#Contains_Novel_or_Only_Known(Annotated)_Junctions as_event_type gene_name chr strand exclusion_junctions inclusion_junctions exclusion_exons inclusion_exons intron-exon_junctions neighboring_constitutive_exons virtual Untreated CG10203 CG10851 CG17136 CG1987 CG4602 CG5442 CG5655 CG10377 CG12749 CG13425 CG16901 CG17838 CG18426 CG30122 CG31000 CG6946 CG7437 CG9373 CG9983 CG10279 CG1646 CG3312 CG6227 CG5836 CG6841 CG8241 CG8749 CG1101 CG1559 CG16788 CG8781 CG10128 CG10328 CG11266 CG18350 CG3584 CG4262 CG5422 CG6049 CG7878 CG7971 CG8019 CG8912 CG9412 CG31716 CG32423 CG3249 CG33106 CG4760 CG4816 CG4878 CG5170 CG5821 CG6203 CG6779 CG8636 N intron_retention Clc,CG6951 chr3L + chr3L_20234785_20235884 chr3L_20234784_20234785;chr3L_20235884_20235885 chr3L_20234707_20234784;chr3L_20235885_20236816 20.83 NA NA 50.00 NA NA NA NA NA NA NA 25.00 NA NA NA 12.50 NA NA NA 20.83 NA NA 38.46 NA NA NA 100.00 33.33 100.00 NA NA NA NA NA NA NA NA NA NA 15.38 33.33 20.00 NA NA NA 13.33 NA NA 20.00 NA NA NA NA NA NA 20.00 NA 10.53 K alternative_acceptor I_chr3L_212783_212843,Kaz1-ORFB,Kaz1-ORFA_Kaz1-ORFB,CG13877 chr3L + chr3L_218196_218282 chr3L_218196_218279 chr3L_218127_218195;chr3L_218283_218658 55.91 66.67 60.00 NA NA NA 52.63 68.18 44.44 NA NA 68.18 NA 52.94 55.56 63.64 56.25 58.33 50.00 53.12 60.00 NA 63.64 55.56 NA 63.64 53.85 NA NA 63.64 53.33 75.00 50.00 55.56 60.00 NA 54.55 NA 50.00 52.63 50.00 62.50 66.67 NA NA 43.75 80.95 NA 45.45 62.50 60.00 36.36 NA 68.75 53.85 53.33 68.18 NA K jcn_only_AD CG31217 chr3R - chr3R_12479557_12479627 chr3R_12479557_12479623 chr3R_12479253_12479556;chr3R_12479628_12480093 91.30 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 91.30 K intron_retention Myo31DF,I_chr2L_10506249_10506683,I_chr2L_10506446_10506542 chr2L - chr2L_10506107_10506683 chr2L_10506106_10506107;chr2L_10506683_10506684 chr2L_10505926_10506106;chr2L_10506684_10506780 18.06 14.77 21.05 19.81 11.67 12.77 37.63 10.57 15.54 21.51 22.86 11.29 29.03 15.96 12.84 19.26 23.21 12.22 20.22 11.82 21.43 16.34 16.27 14.55 32.35 20.78 25.96 14.97 36.44 15.79 12.41 27.27 22.47 14.93 23.91 26.03 15.45 15.12 14.89 13.56 28.75 18.78 21.25 9.74 15.94 20.37 14.86 23.47 14.72 20.27 22.06 19.64 16.28 13.56 18.42 18.06 20.27 17.31 K intron_retention I_chr2R_7778750_7781059,I_chr2R_7778971_7781059,Ef1alpha48D,I_chr2R_7779690_7780997,I_chr2R_7779690_7781065,I_chr2R_7779690_7783075,I_chr2R_7779719_7781059,I_chr2R_7779813_7781059,I_chr2R_7779892_7781059,EF_chr2R_7779896_7781065,I_chr2R_7780542_7781059,I_chr2R_7780580_7781059,snoRNA:Me28S-A1322,I_chr2R_7780840_7781059,I_chr2R_7780877_7781059,RI_chr2R_7781135_7783075 chr2R + chr2R_7779892_7781065 chr2R_7779891_7779892;chr2R_7781065_7781066 chr2R_7779804_7779891;chr2R_7781066_7781097 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.50 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention htt,I_chr3R_24527763_24528033,I_chr3R_24542203_24543363 chr3R + chr3R_24547447_24547531 chr3R_24547446_24547447;chr3R_24547531_24547532 chr3R_24546562_24547446;chr3R_24547532_24547719 0.00 0.00 3.70 2.38 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.17 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG12811,RI_chr3R_5873666_5874292 chr3R - chr3R_5873666_5874292 chr3R_5873666_5874138 chr3R_5873566_5873665;chr3R_5874293_5874392 100.00 100.00 100.00 100.00 100.00 100.00 98.31 98.78 100.00 96.67 100.00 99.02 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.10 100.00 NA 100.00 100.00 96.55 100.00 97.67 100.00 NA 100.00 100.00 100.00 100.00 99.01 100.00 NA 100.00 100.00 100.00 100.00 100.00 99.17 100.00 100.00 100.00 100.00 96.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.44 98.63 100.00 100.00 K alternative_donor RpL15 chr3LHet + chr3LHet_2398018_2398127;chr3LHet_2397859_2398127;chr3LHet_2397925_2398127;chr3LHet_2397992_2398127;chr3LHet_2398060_2398127;chr3LHet_2397841_2398127;chr3LHet_2397820_2398127;chr3LHet_2398053_2398127 chr3LHet_2398002_2398127 chr3LHet_2398128_2398454;chr3LHet_2397802_2397819 0.35 0.00 0.00 0.35 0.00 0.00 1.39 0.36 1.56 4.17 0.00 1.79 0.00 3.70 0.00 3.45 0.00 0.00 0.00 0.00 0.00 1.45 0.00 4.35 0.00 0.00 3.57 1.07 0.84 0.00 1.89 0.44 0.46 0.39 2.38 1.43 0.00 0.00 0.00 0.10 0.74 0.00 0.00 0.22 0.49 0.61 5.56 0.43 0.54 4.35 4.35 0.00 0.00 0.00 1.20 3.85 0.00 0.00 K intron_retention CG13784,I_chr2L_7209439_7209522,I_chr2L_7219131_7219918 chr2L - chr2L_7219131_7219859 chr2L_7219130_7219131;chr2L_7219859_7219860 chr2L_7219031_7219130;chr2L_7219860_7219986 87.30 91.67 82.61 95.24 72.73 93.75 87.10 90.32 85.11 90.00 92.31 80.56 71.43 87.50 95.00 95.00 100.00 87.50 84.38 85.00 78.57 85.71 88.89 83.33 92.31 93.33 83.33 100.00 100.00 72.00 75.00 76.92 84.62 88.89 76.00 100.00 81.82 88.89 80.95 85.11 92.31 78.05 78.95 80.65 NA 85.71 93.33 90.91 82.93 90.00 85.71 92.31 NA 88.89 88.89 80.00 NA 93.75 K alternative_donor CG1358,I_chr2R_3485171_3489936,CEF_chr2R_3495963_3501113 chr2R - chr2R_3493750_3501965 chr2R_3493750_3501438 chr2R_3493449_3493749;chr2R_3501966_3502037 92.31 93.75 92.31 90.00 92.31 100.00 100.00 88.24 92.59 76.47 100.00 84.62 100.00 92.31 94.44 93.75 90.91 85.71 87.50 92.00 100.00 70.00 95.45 90.91 90.00 100.00 100.00 100.00 100.00 86.67 90.00 90.00 100.00 88.89 93.75 92.86 82.61 94.12 100.00 96.43 90.91 85.71 100.00 92.86 88.89 100.00 90.91 100.00 100.00 90.91 90.00 100.00 100.00 75.00 100.00 85.71 90.91 85.71 K alternative_donor M(2)21AB,I_chr2L_107839_110405,I_chr2L_107957_108587,I_chr2L_110878_111037,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_108347_108587;chr2L_108227_108587;chr2L_108102_108587 chr2L_107839_108587 chr2L_108588_108687;chr2L_107833_107838 0.00 0.00 0.00 0.00 0.00 0.00 2.70 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 1.28 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 5.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette RI_chrX_11473566_11473702,roX2,noncoding_23149,I_chrX_11475074_11475402 chrX + chrX_11473433_11473702 chrX_11473433_11473544;chrX_11473562_11473702 chrX_11473545_11473561 chrX_11473419_11473432;chrX_11473703_11473726 50.00 NA NA NA NA NA NA 66.67 57.14 NA NA 64.29 NA NA NA 46.15 NA NA NA 57.89 NA NA NA NA NA 50.00 NA NA NA NA 45.45 NA NA 53.33 NA NA NA NA NA 50.00 NA 42.86 NA NA NA 45.45 NA NA 64.29 NA NA NA NA NA 40.00 NA NA NA K jcn_only_AA Tif-IA,RI_chr2L_22250854_22257652 chr2L + chr2L_22253333_22253424;chr2L_22253333_22253421 chr2L_22253333_22253386 chr2L_22253256_22253332;chr2L_22253425_22253685 3.33 NA NA NA NA NA 1.96 0.00 6.06 NA NA 3.70 NA NA NA NA NA NA NA 3.70 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA 4.76 NA NA 3.45 NA NA NA 0.00 NA NA 3.33 NA 4.76 NA NA NA NA NA NA NA K alternative_acceptor Dystrophin chr3R + chr3R_15394994_15410962 chr3R_15394994_15410934 chr3R_15394977_15394993;chr3R_15410963_15410968 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention tmod,I_chr3R_26402561_26402900 chr3R + chr3R_26403281_26403838 chr3R_26403280_26403281;chr3R_26403838_26403839 chr3R_26402901_26403280;chr3R_26403839_26404436 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 1.09 N alternative_acceptor Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629579_2629913;chr3L_2629585_2629913;chr3L_2629684_2629913;chr3L_2629527_2629913;chr3L_2629597_2629913 chr3L_2629613_2629913 chr3L_2629914_2629921;chr3L_2629427_2629526 0.56 0.50 0.34 0.76 0.58 0.37 0.81 0.61 0.62 0.00 0.63 0.96 0.24 0.60 0.69 0.38 0.93 0.56 0.27 0.26 0.00 0.00 0.34 0.58 1.03 0.72 1.46 0.00 0.69 0.56 0.78 0.83 0.44 0.77 0.71 0.81 1.06 0.69 0.43 0.25 0.00 0.49 0.35 0.51 0.00 0.26 0.00 0.19 1.43 0.93 0.33 0.72 0.00 0.00 0.63 0.64 0.77 0.30 K intron_retention Gga chrX + chrX_9495445_9496113 chrX_9495444_9495445;chrX_9496113_9496114 chrX_9495287_9495444;chrX_9496114_9496708 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6454,I_chr3R_20175958_20178905 chr3R + chr3R_20180603_20180659 chr3R_20180602_20180603;chr3R_20180659_20180660 chr3R_20180515_20180602;chr3R_20180660_20181046 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 NA 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Tm1,I_chr3R_11125070_11126469,I_chr3R_11126545_11128874,I_chr3R_11128245_11128874 chr3R + chr3R_11126545_11127345 chr3R_11126544_11126545;chr3R_11127345_11127346 chr3R_11126470_11126544;chr3R_11127346_11127408 0.00 0.00 0.00 0.77 0.00 0.00 0.63 0.67 0.64 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG8709,I_chr2R_4027128_4027182,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030636,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4030580_4033256;chr2R_4030580_4030636 chr2R_4030580_4033259 chr2R_4030480_4030579;chr2R_4033260_4033265 92.31 93.18 95.12 94.12 92.59 95.24 90.70 90.00 90.74 88.24 93.94 92.13 92.00 89.47 88.57 91.53 90.70 90.00 93.85 89.87 90.32 87.50 90.41 93.22 96.08 93.62 90.32 92.31 86.84 93.02 92.50 95.24 91.43 92.31 90.91 92.31 91.67 96.43 93.88 91.84 95.24 91.58 90.24 91.30 88.89 93.75 93.33 88.24 92.75 96.55 92.75 93.94 96.30 89.47 90.74 96.55 94.44 94.29 K mutually_exclusive CG11299,noncoding_8970,I_chr2R_19602423_19609308,I_chr2R_19619053_19619186 chr2R + chr2R_19601642_19609732,chr2R_19610399_19616571 chr2R_19601642_19602229,chr2R_19602423_19616571 chr2R_19609733_19610398 chr2R_19602230_19602422 chr2R_19601628_19601641;chr2R_19616572_19616757 30.95 33.33 NA 66.67 42.86 NA NA 0.00 16.67 NA NA 60.00 0.00 50.00 NA 33.33 NA 0.00 33.33 50.00 NA NA 8.33 0.00 20.00 66.67 0.00 50.00 0.00 0.00 50.00 NA NA NA 50.00 NA NA 16.67 50.00 50.00 25.00 16.67 0.00 NA 0.00 0.00 50.00 33.33 33.33 28.57 0.00 0.00 40.00 20.00 66.67 0.00 33.33 33.33 K alternative_acceptor CG32436 chr3L + chr3L_21343362_21343438 chr3L_21343362_21343419 chr3L_21343187_21343361;chr3L_21343439_21343562 2.78 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 5.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention mfrn,I_chr3R_23771063_23772599 chr3R - chr3R_23770437_23770500 chr3R_23770436_23770437;chr3R_23770500_23770501 chr3R_23770275_23770436;chr3R_23770501_23770736 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.80 8.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG15717,RI_chrX_13023070_13023131 chrX + chrX_13023222_13023338 chrX_13023221_13023222;chrX_13023338_13023339 chrX_13023132_13023221;chrX_13023339_13024417 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG18177,CRE_chr3L_9721717_9721814,I_chr3L_9723741_9723833 chr3L + chr3L_9721715_9721812 chr3L_9721714_9721715;chr3L_9721812_9721813 chr3L_9721617_9721714;chr3L_9721813_9722117 0.00 0.00 NA 14.29 NA NA NA 20.00 8.33 NA NA 9.52 NA NA NA 6.67 0.00 NA NA 0.00 NA 5.00 4.17 NA 0.00 0.00 22.22 14.29 NA NA NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 7.41 6.67 NA 0.00 0.00 NA NA 13.04 9.09 0.00 NA NA 0.00 NA 10.53 NA NA K intron_retention pps chr3R + chr3R_8246149_8246221 chr3R_8246148_8246149;chr3R_8246221_8246222 chr3R_8245952_8246148;chr3R_8246222_8246384 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 2.08 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA alpha-Cat,I_chr3L_23319861_23321813,I_chr3L_23322620_23322985,I_chr3L_23327841_23328002 chr3L - chr3L_23322499_23322985 chr3L_23322620_23322985 chr3L_23322986_23323085;chr3L_23322330_23322498 0.00 0.00 0.00 1.14 0.00 0.00 1.27 0.00 0.00 2.00 0.00 0.63 2.94 0.00 1.11 1.16 0.00 0.00 1.05 1.21 0.00 6.52 0.00 1.43 0.00 1.37 1.22 0.00 3.85 0.00 4.17 0.00 1.11 0.65 0.00 0.00 2.50 0.00 1.85 0.00 1.45 0.00 0.00 2.70 2.70 3.17 0.00 0.89 0.64 1.61 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10103,noncoding_10997 chr3L - chr3L_6747594_6748519 chr3L_6747593_6747594;chr3L_6748519_6748520 chr3L_6747493_6747593;chr3L_6748520_6749258 9.52 15.38 12.50 10.68 14.29 7.02 7.22 10.11 15.96 14.29 10.81 19.61 18.00 9.52 5.97 14.58 12.50 18.75 10.64 8.82 7.14 5.26 16.07 12.82 11.76 4.84 8.77 18.18 3.08 1.82 10.77 4.69 4.35 12.50 8.62 2.60 8.93 13.51 8.62 5.65 4.81 12.00 9.26 10.42 4.23 5.83 11.63 6.96 13.08 8.82 15.56 9.09 3.39 6.52 10.77 9.80 3.12 3.55 K intron_retention sd,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15714587_15715041 chrX_15714586_15714587;chrX_15715041_15715042 chrX_15714456_15714586;chrX_15715042_15715058 25.00 NA NA 20.00 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Rab30,I_chr2L_7032178_7032236 chr2L - chr2L_7032178_7032244;chr2L_7032178_7032310;chr2L_7032178_7032321 chr2L_7032178_7032236 chr2L_7032078_7032177;chr2L_7032322_7032336 2.27 3.33 2.86 0.00 NA 2.86 0.00 0.00 3.85 5.00 7.14 1.96 9.52 NA 3.70 2.78 5.00 0.00 3.03 1.89 0.00 17.24 2.78 0.00 0.00 4.76 0.00 4.76 2.27 0.00 0.00 3.85 2.44 2.63 NA 0.00 0.00 0.00 8.57 3.39 7.69 7.69 4.17 2.86 2.27 2.04 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 3.23 0.00 NA 0.00 K cassette CG11155,I_chr4_1151213_1151903,I_chr4_1152220_1152710,I_chr4_1152585_1152687 chr4 + chr4_1152220_1152710 chr4_1152220_1152326;chr4_1152585_1152710 chr4_1152327_1152584 chr4_1152120_1152219;chr4_1152711_1152723 100.00 100.00 93.75 100.00 100.00 100.00 100.00 97.30 97.06 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 88.89 95.45 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 87.50 100.00 NA 93.75 100.00 100.00 100.00 90.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 K intron_retention BRWD3 chr3R + chr3R_20151805_20151861 chr3R_20151804_20151805;chr3R_20151861_20151862 chr3R_20151472_20151804;chr3R_20151862_20152617 83.33 82.61 70.27 96.30 77.14 75.00 84.78 87.72 78.75 86.15 84.85 84.62 77.14 78.12 84.62 91.67 84.21 82.93 76.67 83.50 82.35 87.12 93.18 86.36 87.27 90.00 82.93 70.93 79.17 86.67 90.24 82.72 79.50 86.15 86.44 90.79 81.19 89.23 82.64 82.88 92.86 84.91 83.33 77.78 81.20 88.89 83.33 86.16 85.51 81.18 83.33 83.33 81.97 91.49 88.37 83.10 81.82 81.60 K intron_retention CG7188 chr3L - chr3L_8300481_8300893 chr3L_8300480_8300481;chr3L_8300893_8300894 chr3L_8300192_8300480;chr3L_8300894_8301064 1.29 1.24 2.50 3.87 1.47 0.88 1.45 1.14 0.96 0.00 1.71 2.68 3.05 1.80 0.00 2.42 1.80 2.27 0.00 2.04 2.17 1.07 1.28 0.75 3.01 1.46 1.27 1.94 0.70 0.00 0.68 0.00 3.51 1.61 1.83 2.91 0.00 0.00 0.00 2.42 4.23 0.95 0.00 0.00 0.00 1.17 0.60 6.52 2.55 0.84 0.94 0.93 1.59 1.29 1.43 1.58 1.04 1.65 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389272_2395659 chrX_2389272_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2393243;chrX_2393712_2394269;chrX_2394396_2395151;chrX_2395275_2395659 chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664;chrX_2393244_2393711;chrX_2394270_2394395;chrX_2395152_2395274 chrX_2389172_2389271;chrX_2395660_2395759 26.66 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG30118,I_chr2R_14320281_14325712,I_chr2R_14325118_14325712 chr2R - chr2R_14325118_14325712 chr2R_14325118_14325444;chr2R_14325483_14325712 chr2R_14325445_14325482 chr2R_14325111_14325117;chr2R_14325713_14325780 72.73 66.67 85.71 93.33 NA NA 72.73 84.62 76.92 NA NA 83.33 NA 100.00 87.50 83.33 NA 90.00 88.89 81.25 NA 46.67 60.00 50.00 NA NA 80.00 87.50 NA NA 73.33 85.71 64.29 90.91 54.55 NA 53.85 NA 58.33 41.67 50.00 78.95 NA 70.00 50.00 70.00 54.55 80.00 72.73 61.54 70.00 NA NA 55.56 88.89 58.33 NA 68.42 K alternative_donor chico,I_chr2L_10246534_10246899 chr2L - chr2L_10246040_10246184;chr2L_10246040_10246755;chr2L_10246040_10246867;chr2L_10246040_10246899 chr2L_10246040_10247024 chr2L_10245878_10246039;chr2L_10247025_10247051 0.00 0.00 0.00 3.23 0.00 0.00 3.45 2.78 4.35 0.00 0.00 2.63 4.55 0.00 0.00 4.65 5.26 5.88 3.85 3.77 5.56 6.25 0.00 0.00 0.00 5.26 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 4.55 0.00 0.00 2.70 5.88 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 3.23 0.00 8.33 0.00 K intron_retention Vha100-2 chr3R - chr3R_14219132_14222507 chr3R_14219131_14219132;chr3R_14222507_14222508 chr3R_14218994_14219131;chr3R_14222508_14222727 15.38 NA NA 28.57 NA 15.38 15.62 30.00 24.24 NA NA 19.35 9.09 11.76 35.00 18.52 17.65 26.67 10.53 21.88 NA 13.04 15.00 NA NA 23.81 14.29 NA NA NA 0.00 NA NA 15.38 NA 14.29 NA NA 14.29 NA NA 15.62 12.50 NA NA NA NA NA 13.51 NA NA NA NA NA 25.00 NA 14.29 NA K alternative_donor CG31365,RI_chr3R_18950918_18950979 chr3R - chr3R_18950918_18950983 chr3R_18950918_18950979 chr3R_18950818_18950917;chr3R_18950984_18951079 4.17 0.00 NA 0.00 NA 0.00 0.00 5.56 0.00 NA NA 4.35 NA NA 0.00 4.55 0.00 7.14 NA 2.94 0.00 11.76 0.00 0.00 7.69 7.14 4.17 NA NA NA 9.52 NA 14.29 4.55 NA 5.00 0.00 NA NA 0.00 0.00 7.14 NA NA NA 0.00 8.70 6.67 0.00 4.35 4.55 4.55 NA 0.00 5.56 3.85 5.26 0.00 K jcn_only_AA CG9425,I_chr3L_14783173_14784369 chr3L + chr3L_14783173_14784970;chr3L_14783173_14785138 chr3L_14783173_14784369 chr3L_14783073_14783172;chr3L_14785139_14785560 3.12 NA NA 0.00 NA NA 0.00 3.12 0.00 NA NA 9.68 NA NA NA 3.12 NA NA 0.00 18.18 NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA 10.71 NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA K mutually_exclusive Galpha49B,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8504447_8504960,chr2R_8505090_8505299 chr2R_8504447_8504576,chr2R_8504706_8505299 chr2R_8504961_8505089 chr2R_8504577_8504705 chr2R_8504292_8504446;chr2R_8505300_8505429 100.00 100.00 100.00 96.88 100.00 100.00 98.28 97.56 99.05 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.00 100.00 100.00 100.00 100.00 100.00 97.62 98.95 100.00 96.88 98.18 100.00 97.87 94.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 K jcn_only_AD CG17159,CG17162,noncoding_25215 chrXHet - chrXHet_69232_75250;chrXHet_69232_75430 chrXHet_69232_75279 chrXHet_69195_69231;chrXHet_75431_75453 20.83 NA 16.13 23.33 NA 10.00 30.56 20.59 13.79 NA 6.45 9.52 NA NA 17.39 19.23 NA 43.48 NA 20.00 36.36 NA 26.09 20.83 NA 16.13 NA NA NA NA 9.52 NA NA 21.95 NA NA 27.59 23.81 16.22 30.43 NA 22.86 NA 10.00 NA NA NA NA 20.83 NA 20.83 23.08 NA NA 29.41 NA NA NA K intron_retention didum,I_chr2R_3393005_3393348 chr2R + chr2R_3393005_3393153 chr2R_3393004_3393005;chr2R_3393153_3393154 chr2R_3392905_3393004;chr2R_3393154_3393251 0.00 0.00 0.00 7.14 2.38 0.00 0.00 0.00 1.45 0.00 0.00 5.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 3.92 0.00 0.00 0.00 0.00 8.70 0.00 3.45 NA 9.68 0.00 0.00 0.00 0.00 0.00 5.00 0.00 4.44 0.00 0.00 0.00 3.12 1.56 0.00 2.86 0.00 0.00 0.00 0.00 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Pomp,I_chr2L_20788087_20788402 chr2L + chr2L_20788087_20788402 chr2L_20788116_20788402 chr2L_20788403_20788502;chr2L_20787987_20788086 100.00 100.00 100.00 99.63 100.00 99.58 100.00 100.00 99.56 99.56 100.00 99.60 99.46 100.00 100.00 100.00 100.00 99.56 100.00 99.62 100.00 99.02 99.73 99.81 100.00 100.00 99.80 100.00 99.57 100.00 99.67 100.00 100.00 99.65 99.17 100.00 99.86 99.79 100.00 99.57 99.45 99.62 100.00 100.00 100.00 99.76 99.71 100.00 99.71 100.00 100.00 100.00 100.00 99.81 100.00 99.81 100.00 100.00 N jcn_only_AA CG13900,I_chr3L_830745_830907 chr3L - chr3L_830745_830907;chr3L_830814_830907;chr3L_830729_830907 chr3L_830715_830907 chr3L_830908_831007;chr3L_830702_830714 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG10737 chr2R + chr2R_15053034_15058190 chr2R_15053034_15058122 chr2R_15053020_15053033;chr2R_15058191_15058666 80.95 72.73 81.82 75.00 80.00 NA 65.38 66.67 67.86 88.89 61.54 80.95 70.00 63.64 81.82 71.43 81.82 73.33 76.47 87.50 83.33 84.62 76.92 84.62 91.67 93.75 92.86 86.67 95.00 91.67 76.19 84.62 95.65 76.19 NA 69.23 81.82 NA 72.73 95.83 91.67 68.00 58.82 80.00 90.91 90.48 85.71 91.18 83.33 NA 66.67 66.67 NA NA 71.43 80.00 50.00 89.47 K intron_retention crol,I_chr2L_11799403_11802904 chr2L - chr2L_11806158_11808013 chr2L_11806157_11806158;chr2L_11808013_11808014 chr2L_11806048_11806157;chr2L_11808014_11808100 0.00 0.00 0.00 1.72 0.00 0.00 3.23 4.17 0.00 0.00 0.00 2.97 0.00 0.00 6.52 1.92 0.00 8.33 0.00 0.00 0.00 6.25 0.95 0.00 0.00 0.00 8.51 7.55 4.44 0.00 1.69 0.00 0.00 0.00 3.03 0.00 0.00 0.00 1.52 3.49 0.00 1.00 0.00 3.92 6.25 0.00 0.00 4.72 4.30 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mRpS28 chr2R - chr2R_14501930_14501986 chr2R_14501929_14501930;chr2R_14501986_14501987 chr2R_14501643_14501929;chr2R_14501987_14502108 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 5.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 K intron_retention I_chrX_15223901_15223968,HDAC6,I_chrX_15232958_15233665 chrX + chrX_15229302_15229382 chrX_15229301_15229302;chrX_15229382_15229383 chrX_15229023_15229301;chrX_15229383_15229421 0.00 0.00 NA 7.14 NA NA 0.00 3.85 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 20.00 NA NA 0.00 11.76 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 6.06 0.00 NA 0.00 0.00 NA 0.00 5.41 0.00 0.00 NA NA NA 0.00 NA NA 0.00 N alternative_donor CG32529 chrX + chrX_19795641_19795900;chrX_19795522_19795900 chrX_19795687_19795900 chrX_19795901_19798251;chrX_19794649_19795521 0.92 1.85 0.55 2.05 0.60 1.31 1.90 1.24 0.80 0.54 2.02 0.86 1.86 1.27 1.84 1.70 0.00 0.51 0.73 0.92 1.42 14.46 1.11 0.50 0.59 0.00 1.26 1.27 2.16 1.28 1.05 1.14 0.92 0.44 0.83 1.70 0.68 0.81 0.60 0.27 1.20 0.96 0.81 0.32 0.00 1.80 0.91 1.99 1.10 0.78 0.83 0.00 0.00 1.25 1.09 0.75 0.98 0.00 K alternative_donor tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_560576_560883;chr3R_560576_560847 chr3R_560576_560886 chr3R_560204_560575;chr3R_560887_561068 2.10 1.68 3.03 0.92 1.20 3.15 1.53 4.68 2.55 1.45 7.14 2.35 8.41 0.91 4.35 4.85 1.98 0.93 2.74 2.44 8.65 0.00 1.12 1.32 1.14 1.35 2.93 1.06 0.97 4.17 2.27 1.10 0.95 2.73 2.06 NA 0.78 0.96 1.33 0.54 1.68 2.75 4.72 0.77 2.08 2.76 2.42 3.31 3.27 0.79 2.66 3.00 1.06 2.13 2.94 0.71 2.44 5.11 K alternative_acceptor Fur1,I_chr3R_21179590_21179870,CEI_chr3R_21210600_21222433,I_chr3R_21257704_21287086 chr3R - chr3R_21177936_21179870;chr3R_21177915_21179870 chr3R_21179590_21179870 chr3R_21179871_21179970;chr3R_21177839_21177914 1.03 0.00 2.44 0.00 0.00 0.00 1.92 1.82 0.86 0.00 13.79 1.98 0.00 0.00 0.00 2.44 0.00 2.00 0.00 0.85 3.12 1.10 1.19 1.52 1.47 0.00 1.69 9.68 1.03 0.00 1.82 0.00 1.03 1.23 1.52 0.00 1.03 1.79 0.79 0.90 1.56 0.79 0.00 0.93 0.77 0.79 1.47 0.62 1.05 1.82 1.12 0.00 0.00 1.47 1.75 1.82 0.00 0.71 K alternative_acceptor CG9932,I_chr2L_13031395_13035824 chr2L - chr2L_13028540_13028867 chr2L_13028552_13028867 chr2L_13028868_13029642;chr2L_13027809_13028539 48.48 54.17 54.17 57.14 52.63 63.16 44.00 58.62 45.65 53.33 60.00 43.59 35.71 35.71 41.38 55.17 64.29 47.06 54.55 46.81 53.85 49.41 48.39 66.67 62.50 33.33 58.82 54.55 44.00 41.94 57.14 41.67 47.37 48.48 47.62 61.11 44.74 46.15 51.61 46.94 64.29 41.38 47.83 54.17 42.11 50.00 50.00 49.02 45.00 45.00 45.00 47.06 43.75 54.55 43.33 58.33 53.85 33.33 N jcn_only_AD CG32594 chrX + chrX_14927496_14927638;chrX_14927033_14927638;chrX_14926607_14927638 chrX_14927381_14927638 chrX_14927639_14928125;chrX_14925576_14926606 4.21 3.95 3.00 13.64 5.61 4.63 1.29 8.33 3.11 2.74 12.57 5.04 0.71 6.35 3.80 7.34 2.86 6.74 8.94 6.28 9.69 7.76 5.34 4.48 2.70 3.23 5.33 7.58 11.06 1.05 4.55 6.93 8.25 2.27 5.81 4.21 2.56 4.07 4.33 6.25 2.94 4.94 4.49 2.98 3.04 4.29 3.57 2.29 3.86 2.63 6.25 2.46 3.31 2.79 4.21 3.30 3.18 0.42 K intron_retention mus308 chr3R - chr3R_8532951_8533003 chr3R_8532950_8532951;chr3R_8533003_8533004 chr3R_8532743_8532950;chr3R_8533004_8535227 0.00 NA 7.69 3.45 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 K intron_retention CG1681,RI_chrX_13299118_13299649,RI_chrX_13299118_13301936,I_chrX_13299118_13302688,I_chrX_13300335_13302320 chrX + chrX_13299118_13302320 chrX_13299117_13299118;chrX_13302320_13302321 chrX_13299018_13299117;chrX_13302321_13302420 1.59 1.38 1.27 2.67 0.00 0.00 2.11 0.00 1.17 2.47 6.25 1.41 0.00 0.00 2.90 0.00 0.00 0.00 0.00 1.64 2.00 1.39 2.60 3.45 5.93 3.28 1.22 3.43 7.62 1.59 1.33 3.03 3.64 2.17 0.00 2.56 0.87 1.97 2.30 1.65 0.00 1.56 1.82 1.23 2.78 2.26 0.00 0.00 1.98 2.00 2.26 3.60 1.03 0.00 0.00 0.73 1.63 0.00 K alternative_donor E2f,I_chr3R_17452573_17458606,R_chr3R_17452574_17485937,CG6353 chr3R - chr3R_17452573_17458645 chr3R_17452573_17457854 chr3R_17452474_17452572;chr3R_17458646_17458706 83.33 84.00 88.75 87.57 79.63 85.92 86.31 82.45 83.13 97.30 92.00 87.26 87.88 82.35 85.11 86.71 86.36 82.72 81.67 79.62 89.47 65.33 81.31 89.86 90.57 83.16 82.09 77.78 88.75 72.09 85.57 86.54 79.03 82.42 81.08 94.52 94.55 82.61 85.71 89.38 79.76 88.07 89.66 89.23 83.33 79.05 82.61 84.71 81.59 86.11 82.95 81.67 81.82 73.91 85.83 81.63 79.49 81.91 K intron_retention mrj,RI_chr2R_12093733_12108627,I_chr2R_12108697_12109174 chr2R - chr2R_12092537_12093214 chr2R_12092536_12092537;chr2R_12093214_12093215 chr2R_12092330_12092536;chr2R_12093215_12093324 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 2.88 0.00 3.08 0.00 1.32 0.00 5.56 3.37 1.98 0.00 0.00 1.67 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.80 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 1.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG11739,RI_chr3R_205772_205830,I_chr3R_207254_207600 chr3R + chr3R_205768_205830 chr3R_205772_205830 chr3R_205831_205930;chr3R_205672_205767 1.41 1.09 1.11 1.92 1.15 0.00 1.18 0.59 1.90 0.00 0.00 2.22 1.33 0.00 0.97 0.97 2.30 1.22 1.32 1.03 1.45 2.27 2.50 2.50 0.00 1.79 1.35 3.45 10.26 2.38 6.06 2.13 3.77 0.00 0.00 1.79 0.00 1.43 2.11 3.66 2.27 1.38 2.86 0.00 0.00 1.41 1.33 2.38 0.65 2.94 1.23 1.85 2.22 1.18 1.83 1.08 2.21 3.90 K jcn_only_AD CG9797 chr3R - chr3R_4555824_4556254 chr3R_4555824_4556088 chr3R_4555512_4555823;chr3R_4556255_4556334 100.00 100.00 100.00 99.00 100.00 100.00 100.00 98.41 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.80 100.00 97.96 98.59 100.00 100.00 90.16 100.00 100.00 100.00 97.33 100.00 100.00 100.00 100.00 98.68 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.84 N alternative_donor CycG,I_chr3R_27425071_27425214,RE_chr3R_27427953_27436598 chr3R - chr3R_27425071_27426110 chr3R_27425071_27425968 chr3R_27424971_27425070;chr3R_27426111_27426325 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.14 0.07 0.00 0.00 0.26 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.40 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.17 0.00 0.00 0.00 0.16 0.00 0.00 0.10 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10907 chr3L + chr3L_11787277_11787453 chr3L_11787276_11787277;chr3L_11787453_11787454 chr3L_11786670_11787276;chr3L_11787454_11787837 6.25 NA NA 0.00 NA NA 0.00 NA 7.14 NA NA NA NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG6686 chr2L - chr2L_11987513_11987695;chr2L_11987495_11987695 chr2L_11987388_11987695 chr2L_11987696_11988035 94.23 93.81 91.78 87.69 100.00 95.38 98.15 95.24 94.56 92.06 98.59 94.53 95.83 95.24 99.08 98.68 98.08 92.86 84.78 95.39 92.98 77.38 92.45 93.84 88.51 84.91 97.06 98.30 91.72 91.51 87.76 94.34 83.91 94.23 96.83 92.86 94.26 95.77 95.51 92.95 94.67 95.15 95.38 93.62 83.82 94.20 95.24 88.12 94.44 92.44 92.72 97.20 97.33 94.44 91.86 91.74 90.00 88.24 K jcn_only_AA ATPCL,RFI_chr2R_11883823_11884399,I_chr2R_11887476_11888411 chr2R - chr2R_11883820_11884399 chr2R_11883871_11884399 chr2R_11884400_11884499;chr2R_11883723_11883819 100.00 100.00 99.35 100.00 100.00 99.37 99.31 100.00 100.00 100.00 99.30 100.00 100.00 99.11 100.00 100.00 100.00 100.00 100.00 100.00 99.39 99.73 99.68 100.00 100.00 99.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.78 100.00 100.00 100.00 100.00 99.14 100.00 100.00 100.00 99.60 100.00 99.34 99.10 99.32 100.00 100.00 100.00 K jcn_only_AA CG32202 chr3L + chr3L_18675478_18675538 chr3L_18675478_18675524 chr3L_18675302_18675477;chr3L_18675539_18675973 0.59 NA 0.00 0.00 NA 0.00 0.00 7.27 1.89 NA 4.35 0.00 NA 7.14 11.11 4.35 NA 0.00 0.00 1.18 0.00 7.14 5.71 4.17 NA 0.00 NA NA 4.76 0.00 0.00 10.71 18.18 0.00 4.76 NA NA 0.00 0.00 0.00 0.00 2.50 0.00 0.00 3.45 2.08 0.00 0.00 2.13 5.71 6.67 NA 0.00 0.00 0.00 8.70 2.78 2.22 K alternative_acceptor CG6656,RI_chr3R_17701533_17702073,CG33092 chr3R + chr3R_17701533_17702073 chr3R_17701533_17702069 chr3R_17701437_17701532;chr3R_17702074_17702162 97.34 100.00 100.00 100.00 100.00 96.67 100.00 100.00 98.75 93.33 95.24 98.11 100.00 95.65 97.30 100.00 100.00 97.30 96.67 98.91 95.65 97.30 95.65 100.00 93.33 100.00 100.00 95.45 91.67 100.00 97.56 95.65 97.30 97.83 100.00 NA 98.57 95.45 94.52 96.67 93.33 98.51 100.00 90.91 93.10 100.00 97.62 96.00 100.00 96.67 100.00 94.12 94.44 96.43 97.37 96.00 98.51 96.43 K mutually_exclusive CG9171,I_chr2L_5771210_5773014,RI_chr2L_5792418_5799117,I_chr2L_5799412_5800043 chr2L - chr2L_5771210_5799117,chr2L_5799278_5800043 chr2L_5771210_5787964,chr2L_5787985_5800043 chr2L_5799118_5799277 chr2L_5787965_5787984 chr2L_5771110_5771209;chr2L_5800044_5800143 0.00 NA NA NA NA NA 0.00 0.00 33.33 NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 14.29 NA 0.00 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA 12.50 0.00 NA NA NA NA NA 22.22 NA NA NA NA NA NA NA NA NA K alternative_acceptor e(y)3,I_chrX_19526957_19527002 chrX - chrX_19526939_19527002 chrX_19526957_19527002 chrX_19527003_19527102;chrX_19526857_19526938 0.00 0.00 0.00 2.38 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.81 0.00 0.00 2.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 1.41 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Axn,I_chr3R_25849563_25849626 chr3R + chr3R_25859466_25859544 chr3R_25859466_25859526 chr3R_25859321_25859465;chr3R_25859545_25859847 32.50 31.11 34.78 33.33 26.67 25.58 43.59 40.00 29.23 21.95 43.33 32.43 34.29 41.18 34.21 30.23 36.00 29.27 35.29 35.63 30.00 30.77 27.03 30.77 21.82 16.67 40.74 44.12 34.78 30.00 23.53 35.29 29.17 25.45 31.82 42.11 32.50 45.45 28.99 28.71 18.75 35.94 31.43 31.48 30.56 33.33 26.42 33.33 44.44 32.65 41.07 41.18 38.10 33.33 23.40 34.29 34.38 24.44 K intron_retention RI_chrX_1954878_1955077,CG4281,CG14054,I_chrX_1962457_1964222 chrX - chrX_1958522_1958579 chrX_1958521_1958522;chrX_1958579_1958580 chrX_1957450_1958521;chrX_1958580_1958853 0.00 0.00 0.00 6.45 0.00 0.00 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 2.23 1.95 0.00 1.98 1.52 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 4.76 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.50 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 K alternative_acceptor Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4847655_4848167;chrX_4847655_4847757 chrX_4847655_4848149 chrX_4847526_4847654;chrX_4848168_4848168 70.37 75.00 64.71 76.19 61.11 64.71 57.14 73.91 58.33 65.00 66.67 65.22 25.00 73.33 70.59 71.43 77.78 71.43 73.33 78.12 73.33 69.57 66.67 65.62 72.22 88.89 83.33 91.67 86.67 66.67 70.37 64.29 73.33 67.74 75.00 82.35 65.79 69.57 60.61 80.00 73.68 70.37 80.00 64.29 72.22 69.57 62.96 63.64 73.91 68.00 63.64 85.00 66.67 77.78 76.92 69.23 64.71 65.22 N intron_retention CG42354,CG42353 chrX - chrX_15989430_15989490 chrX_15989429_15989430;chrX_15989490_15989491 chrX_15989002_15989429;chrX_15989491_15989723 0.00 NA NA 4.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 0.00 NA NA NA NA 11.11 25.00 15.79 NA 0.00 NA 0.00 4.17 NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K jcn_only_AA Syb chr2R - chr2R_6138650_6139432 chr2R_6138719_6139432 chr2R_6139433_6139489;chr2R_6138448_6138649 26.85 21.95 21.78 32.89 23.53 25.13 26.89 32.00 25.16 22.66 24.70 26.16 24.06 21.59 22.47 29.42 23.93 20.49 26.85 29.50 21.36 33.05 24.84 28.32 29.97 24.81 32.02 41.31 31.29 27.83 23.52 33.33 32.66 28.92 28.60 19.10 18.23 25.20 26.28 32.28 29.67 30.48 21.04 23.82 33.27 32.70 26.71 40.99 28.73 26.21 29.61 29.70 26.75 28.33 19.91 22.52 27.31 40.43 K alternative_donor CG6724 chr2L - chr2L_10768891_10768953 chr2L_10768891_10768947 chr2L_10768644_10768890;chr2L_10768954_10769614 100.00 97.67 97.44 98.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.72 100.00 100.00 100.00 100.00 100.00 97.30 96.97 100.00 100.00 100.00 98.15 100.00 95.24 100.00 97.87 100.00 100.00 100.00 100.00 98.33 98.97 100.00 97.37 96.77 98.51 100.00 98.39 98.44 98.08 100.00 100.00 97.96 98.72 98.46 100.00 98.44 100.00 100.00 98.04 100.00 98.18 100.00 97.73 100.00 100.00 99.27 K intron_retention CG12428,I_chr3R_23531574_23532266 chr3R - chr3R_23531574_23531981 chr3R_23531573_23531574;chr3R_23531981_23531982 chr3R_23531474_23531573;chr3R_23531982_23531987 12.50 NA NA NA NA NA 13.33 NA 7.69 NA NA NA NA NA NA NA NA NA NA 0.00 NA 26.32 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA K intron_retention poe chr2L - chr2L_8056254_8056308 chr2L_8056253_8056254;chr2L_8056308_8056309 chr2L_8054657_8056253;chr2L_8056309_8058244 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1443 chr3R - chr3R_24821097_24821187 chr3R_24821096_24821097;chr3R_24821187_24821188 chr3R_24820984_24821096;chr3R_24821188_24821240 31.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 31.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350149_15351814;chr2R_15350905_15351814;chr2R_15350285_15351814 chr2R_15350437_15351814 chr2R_15351815_15351914;chr2R_15350068_15350148 33.33 28.57 37.50 25.00 33.33 30.00 27.78 38.10 22.73 66.67 60.00 42.86 33.33 30.00 16.67 25.00 33.33 33.33 30.00 19.05 28.57 33.33 41.67 36.36 40.00 18.18 57.14 40.00 60.00 36.36 35.71 50.00 28.57 36.36 57.14 21.43 60.00 66.67 20.00 28.57 33.33 35.29 50.00 33.33 NA 50.00 40.00 37.50 40.74 16.67 42.86 33.33 20.00 25.00 21.43 33.33 28.57 40.00 K intron_retention Fer1HCH,I_chr3R_26212319_26213496,I_chr3R_26212319_26212460,I_chr3R_26212834_26213185,I_chr3R_26213132_26213185 chr3R - chr3R_26212319_26213185 chr3R_26212318_26212319;chr3R_26213185_26213186 chr3R_26212219_26212318;chr3R_26213186_26213272 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.07 0.00 0.25 0.00 0.08 0.00 0.00 0.11 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.07 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2389073;chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2395659 chrX_2387584_2387709;chrX_2388437_2388670;chrX_2389074_2389271;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2395660_2395759 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.75 0.59 0.00 0.00 3.26 0.00 1.72 1.11 0.00 0.00 0.00 1.22 0.99 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 1.01 0.76 0.00 0.00 1.12 0.00 1.25 0.99 0.00 0.73 0.00 1.39 0.00 0.00 NA 0.78 0.56 0.00 0.00 0.00 0.00 NA 1.02 0.00 0.00 0.00 K jcn_only_AA CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2815768_2816013;chr2R_2815657_2816013 chr2R_2815654_2816013 chr2R_2816014_2816113;chr2R_2815599_2815653 17.91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.83 NA NA NA NA NA NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG8312 chr3R + chr3R_5448140_5448194 chr3R_5448140_5448191 chr3R_5448075_5448139;chr3R_5448195_5448263 35.48 36.99 32.26 38.82 22.64 37.88 35.82 44.71 37.50 38.10 36.67 30.97 47.06 48.57 32.93 30.36 32.35 32.39 35.71 31.76 44.83 35.77 45.56 33.72 36.36 31.71 28.40 37.50 33.96 40.79 29.58 31.37 32.63 42.27 46.38 42.86 34.59 36.25 40.74 35.48 37.50 31.16 35.19 36.84 27.78 32.39 37.04 46.99 31.62 42.42 31.13 44.44 28.77 26.04 33.82 27.42 34.31 35.29 K alternative_donor CG1458,I_chr3R_25048492_25048616 chr3R - chr3R_25048492_25048964 chr3R_25048492_25048616 chr3R_25048392_25048491;chr3R_25048965_25049121 1.19 0.65 0.93 1.92 1.67 1.98 1.22 1.59 1.95 0.00 2.44 1.25 1.67 1.14 0.93 2.38 2.08 1.12 3.23 1.43 1.37 1.75 0.98 0.70 0.00 1.15 1.03 1.18 1.19 1.61 3.26 1.23 0.99 2.40 0.93 0.00 0.81 0.00 0.49 1.83 1.27 1.04 1.47 0.85 1.53 1.63 1.06 1.19 2.27 2.22 1.44 0.90 0.89 0.76 1.12 0.65 1.10 2.02 K alternative_donor lin chr2R + chr2R_4802513_4802569;chr2R_4802505_4802569 chr2R_4802509_4802569 chr2R_4802570_4805741;chr2R_4802033_4802504 3.57 0.00 0.00 6.67 11.11 0.00 0.00 6.25 3.45 11.11 9.09 7.41 0.00 8.33 5.88 0.00 11.11 11.11 0.00 2.94 14.29 0.00 0.00 4.00 5.00 7.69 3.57 0.00 0.00 4.76 0.00 0.00 7.41 4.35 5.88 12.50 3.57 4.35 7.89 9.68 0.00 6.67 0.00 5.26 0.00 22.73 0.00 7.14 9.52 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Dgkepsilon chr2R + chr2R_8646849_8646903 chr2R_8646848_8646849;chr2R_8646903_8646904 chr2R_8646561_8646848;chr2R_8646904_8647226 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor RI_chr3L_3803455_3805820,CG10855,I_chr3L_3804765_3804877 chr3L - chr3L_3804751_3805820 chr3L_3804765_3805820 chr3L_3805821_3805920;chr3L_3804665_3804750 100.00 NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA N multi_cassette CG1161,RI_chr3R_1181273_1181459,I_chr3R_1182079_1182146 chr3R + chr3R_1181273_1182146 chr3R_1181273_1181555;chr3R_1181665_1181724;chr3R_1181851_1181899;chr3R_1181959_1182146 chr3R_1181556_1181664;chr3R_1181725_1181850;chr3R_1181900_1181958 chr3R_1181173_1181272;chr3R_1182147_1182246 100.00 100.00 100.00 100.00 100.00 100.00 86.67 100.00 92.13 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.33 100.00 90.00 85.25 87.10 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 67.95 100.00 100.00 100.00 100.00 100.00 100.00 89.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 86.27 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD slgA,I_chrX_21253735_21253820 chrX + chrX_21245849_21247146;chrX_21245487_21247146 chrX_21245768_21247146 chrX_21247147_21247693;chrX_21245405_21245486 28.93 NA NA NA NA NA NA 15.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG33232,I_chr3L_2484838_2495010,CG1146 chr3L + chr3L_2490848_2490979 chr3L_2490847_2490848;chr3L_2490979_2490980 chr3L_2490798_2490847;chr3L_2490980_2492250 78.57 NA NA 81.82 NA NA 78.57 90.00 60.00 NA NA 90.00 NA NA NA 87.50 NA NA NA NA NA 50.00 NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 63.64 NA 63.64 NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA K alternative_donor Mtch,RI_chr3L_184729_185366,I_chr3L_185367_185925 chr3L + chr3L_184670_184774 chr3L_184682_184774 chr3L_184775_185000;chr3L_184665_184669 44.44 NA 53.33 46.67 NA 25.00 50.00 41.67 64.00 NA 46.15 50.00 40.00 44.44 47.06 53.33 NA 41.67 35.71 38.46 NA NA NA NA NA 35.71 NA NA NA NA 36.36 35.71 27.27 60.00 NA NA NA NA NA 30.43 NA 48.28 75.00 NA 43.75 41.67 NA 40.00 47.62 NA NA NA NA NA 57.89 NA NA 45.45 K alternative_donor Pk61C,CE_chr3L_129889_141769,I_chr3L_132531_133824,I_chr3L_133962_134014 chr3L + chr3L_129889_135457 chr3L_129909_135457 chr3L_135458_135842;chr3L_129840_129888 0.00 0.00 0.00 0.00 2.44 0.00 1.67 1.23 1.75 0.00 0.00 1.54 0.00 0.00 1.67 0.00 0.00 2.78 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 3.23 0.00 0.00 0.00 0.93 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 2.50 0.00 0.00 0.00 0.00 0.00 1.27 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 K multi_cassette Jupiter,I_chr3R_7417030_7419354,I_chr3R_7418347_7445425,RE_chr3R_7419487_7429863,I_chr3R_7429934_7430307,I_chr3R_7429962_7445425,I_chr3R_7430006_7445425,RI_chr3R_7442748_7445425,RI_chr3R_7442793_7445425 chr3R - chr3R_7418347_7445425 chr3R_7418347_7419043;chr3R_7419077_7419354;chr3R_7419489_7445425 chr3R_7419044_7419076;chr3R_7419355_7419488 chr3R_7418247_7418346;chr3R_7445426_7445525 99.35 98.00 100.00 99.36 100.00 100.00 95.29 99.03 100.00 99.08 100.00 100.00 100.00 100.00 98.86 100.00 98.41 100.00 100.00 100.00 100.00 97.66 100.00 98.51 94.69 97.37 98.31 94.92 98.95 100.00 100.00 100.00 98.67 100.00 99.26 99.16 99.07 98.23 99.29 98.80 99.60 99.44 100.00 100.00 99.37 99.35 99.06 99.68 99.37 99.28 99.15 98.55 98.82 98.95 98.91 100.00 99.01 99.63 K intron_retention l(1)G0156 chrX - chrX_19413865_19413936 chrX_19413864_19413865;chrX_19413936_19413937 chrX_19413729_19413864;chrX_19413937_19414331 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG8079 chr2R + chr2R_11109071_11109232 chr2R_11109071_11109132 chr2R_11108939_11109070;chr2R_11109233_11109322 6.67 10.53 NA 0.00 NA 0.00 19.05 7.69 10.00 NA 0.00 11.11 6.67 14.29 0.00 4.00 NA 0.00 NA 4.08 NA NA 3.45 8.70 16.67 NA 0.00 NA NA NA 9.68 NA NA 4.00 0.00 0.00 8.33 6.25 15.00 9.09 NA 15.00 NA 0.00 NA 7.69 7.69 NA 6.25 6.67 4.35 12.50 NA 0.00 8.33 NA NA NA K alternative_acceptor Hsc70Cb chr3L + chr3L_14030212_14030580 chr3L_14030212_14030577 chr3L_14030158_14030211;chr3L_14030581_14030850 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD RpS18,CG8908,EI_chr2R_16151918_16151997,I_chr2R_16151918_16152036,I_chr2R_16151938_16152065,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151938_16151997;chr2R_16151942_16151997 chr2R_16151918_16151997 chr2R_16151998_16152066;chr2R_16151852_16151917 0.07 0.08 0.10 0.07 0.05 0.11 0.06 0.09 0.07 0.06 0.11 0.09 0.11 0.07 0.06 0.16 0.13 0.10 0.05 0.09 0.11 0.14 0.07 0.08 0.07 0.11 0.04 0.06 0.07 0.04 0.14 0.04 0.07 0.09 0.07 0.10 0.08 0.07 0.06 0.05 0.06 0.05 0.11 0.04 0.02 0.09 0.03 0.05 0.08 0.03 0.06 0.05 0.07 0.06 0.10 0.07 0.02 0.04 K alternative_acceptor Gnf1,I_chr3R_749200_749265 chr3R + chr3R_733842_733969 chr3R_733842_733903 chr3R_732511_733841;chr3R_733970_734812 0.00 1.67 1.25 0.00 0.00 0.00 3.03 0.00 0.85 0.00 0.00 0.00 2.13 1.72 0.00 1.00 0.00 2.00 1.61 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 1.09 0.00 0.00 0.00 1.72 0.00 0.00 1.23 0.88 1.85 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG3011,I_chrX_5808514_5808613 chrX - chrX_5808437_5808613 chrX_5808514_5808613 chrX_5808614_5808683;chrX_5808420_5808436 1.64 1.76 2.21 1.46 0.69 0.92 4.60 1.67 1.34 0.66 0.98 1.26 6.90 1.05 0.62 1.05 1.04 0.84 2.88 2.59 0.00 3.81 2.10 2.40 2.73 4.35 2.20 1.26 2.67 3.12 1.48 3.25 3.82 1.09 3.96 7.53 1.53 0.88 1.87 1.90 2.56 1.19 0.00 0.85 2.87 2.14 1.83 3.41 1.38 2.15 1.64 0.82 1.08 1.97 0.67 1.45 1.00 1.47 K intron_retention sba,I_chr3R_19721149_19722571 chr3R - chr3R_19721149_19722784 chr3R_19721148_19721149;chr3R_19722784_19722785 chr3R_19721049_19721148;chr3R_19722785_19722913 100.00 100.00 95.65 95.83 93.75 94.74 100.00 95.65 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 96.77 100.00 100.00 100.00 100.00 97.62 100.00 95.65 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 96.55 K alternative_acceptor lkb1 chr3R + chr3R_9504789_9504872;chr3R_9504789_9504862 chr3R_9504789_9504847 chr3R_9504472_9504788;chr3R_9504873_9505152 57.14 47.83 62.50 67.74 54.55 58.33 50.00 50.00 65.71 50.00 50.00 59.38 56.25 46.67 52.38 54.17 60.00 50.00 55.56 57.14 88.89 65.00 NA 50.00 50.00 55.00 55.00 60.00 52.63 57.14 62.50 52.94 60.00 46.15 61.54 NA 62.50 60.00 57.89 64.52 47.06 57.69 NA 50.00 48.00 67.57 60.87 57.14 51.43 55.00 55.00 NA NA 64.00 NA 62.50 58.33 66.67 K alternative_acceptor Ucrh,CREFI_chr3LHet_606442_607073 chr3LHet + chr3LHet_606442_607073 chr3LHet_606442_606499 chr3LHet_606350_606441;chr3LHet_607074_607088 98.60 99.02 98.88 98.97 100.00 97.67 97.52 98.38 98.47 100.00 100.00 94.61 100.00 96.46 98.04 98.60 100.00 100.00 100.00 99.38 100.00 86.67 96.15 98.89 93.33 89.13 99.07 98.21 91.67 100.00 99.33 95.38 96.77 97.86 98.73 98.61 100.00 100.00 97.37 100.00 96.72 97.91 97.12 96.77 97.62 98.63 99.14 97.37 97.80 99.17 98.89 98.63 97.78 99.12 98.39 98.47 99.08 98.31 K intron_retention msn,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2563960_2564396 chr3L_2563959_2563960;chr3L_2564396_2564397 chr3L_2563818_2563959;chr3L_2564397_2564692 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.85 0.99 0.94 0.48 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Cctgamma chr3R + chr3R_12473772_12473856 chr3R_12473771_12473772;chr3R_12473856_12473857 chr3R_12473710_12473771;chr3R_12473857_12474356 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.19 0.31 0.19 0.00 0.00 0.96 0.98 0.33 0.20 0.31 0.27 0.13 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.25 0.00 0.00 0.00 K intron_retention RpL28,RI_chr3L_3221710_3221877,snoRNA:Me28S-C3351 chr3L - chr3L_3221710_3221877 chr3L_3221709_3221710;chr3L_3221877_3221878 chr3L_3221610_3221709;chr3L_3221878_3221977 33.34 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 63.64 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA K alternative_acceptor mod(r),I_chrX_515823_515874,RI_chrX_515831_515923,I_chrX_516392_517480 chrX + chrX_515831_515874;chrX_515831_515885 chrX_515831_515923 chrX_515763_515830;chrX_515924_515974 4.76 6.67 0.00 5.26 0.00 7.14 5.56 4.76 10.34 0.00 7.69 0.00 8.33 0.00 0.00 4.55 0.00 0.00 20.00 0.00 7.14 9.09 0.00 0.00 10.00 7.14 0.00 0.00 0.00 11.11 13.64 0.00 0.00 4.76 9.09 20.00 5.88 0.00 6.25 0.00 14.29 4.00 0.00 5.88 27.27 0.00 5.88 12.50 0.00 0.00 10.53 9.09 0.00 0.00 5.88 0.00 6.67 7.14 K intron_retention CG8202 chr3R + chr3R_4560474_4560531 chr3R_4560473_4560474;chr3R_4560531_4560532 chr3R_4560142_4560473;chr3R_4560532_4560840 0.00 0.00 0.00 2.22 0.00 0.00 0.00 2.38 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention l(3)82Fd,I_chr3R_1125296_1161435,I_chr3R_1125296_1175189,I_chr3R_1129905_1148709,I_chr3R_1129905_1160126,I_chr3R_1131576_1133656,I_chr3R_1131693_1133665,I_chr3R_1147660_1148709 chr3R - chr3R_1131693_1133665 chr3R_1131692_1131693;chr3R_1133665_1133666 chr3R_1131626_1131692;chr3R_1133666_1133756 20.00 NA NA NA NA NA NA 35.29 36.36 NA NA 7.14 20.00 NA NA 41.67 NA NA 28.57 5.56 NA NA NA NA NA NA NA NA NA NA 16.67 NA NA 15.38 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA 27.78 NA NA NA NA NA NA NA NA NA K intron_retention RI_chr2L_22735482_22741701,CG17715,I_chr2L_22737141_22741701,I_chr2L_22742106_22746918 chr2L + chr2L_22737141_22737199 chr2L_22737140_22737141;chr2L_22737199_22737200 chr2L_22737072_22737140;chr2L_22737200_22737268 38.03 42.03 46.15 37.38 41.18 46.15 18.18 42.50 42.14 30.30 33.33 38.03 32.65 32.50 39.76 36.31 32.88 50.68 40.18 44.78 50.98 19.57 46.67 34.18 45.65 46.67 40.00 31.03 80.95 29.31 35.97 32.14 43.33 40.12 34.48 41.46 24.62 37.10 41.51 37.70 40.00 38.97 37.97 25.45 39.13 34.29 25.93 60.61 43.89 33.72 36.79 25.58 48.65 33.33 43.16 28.38 23.81 44.19 K jcn_only_AA CG9904 chrX + chrX_2515346_2515418 chrX_2515346_2515411 chrX_2514858_2515345;chrX_2515419_2516173 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG9855,RI_chr3R_222522_222581,RI_chr3R_222525_222604,I_chr3R_223384_223429 chr3R - chr3R_222525_222604 chr3R_222525_222581 chr3R_222457_222524;chr3R_222605_222650 100.00 96.15 100.00 97.67 100.00 95.45 100.00 100.00 97.96 100.00 100.00 100.00 94.44 100.00 96.55 96.88 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 90.91 100.00 97.06 100.00 97.83 100.00 100.00 97.50 98.18 97.06 95.45 100.00 96.77 96.30 100.00 98.59 100.00 98.00 100.00 100.00 100.00 100.00 95.24 98.92 97.73 100.00 100.00 95.24 97.06 100.00 100.00 97.06 100.00 98.84 K intron_retention sar1,I_chr3R_18185148_18185246 chr3R + chr3R_18183394_18184093 chr3R_18183393_18183394;chr3R_18184093_18184094 chr3R_18183253_18183393;chr3R_18184094_18184213 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.58 0.62 0.00 0.00 0.00 0.00 1.75 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.32 0.00 0.00 K cassette cv-c,RI_chr3R_10258928_10265129,RI_chr3R_10301040_10306363,RI_chr3R_10306635_10307255 chr3R - chr3R_10221749_10233875 chr3R_10221749_10225440;chr3R_10225513_10233875 chr3R_10225441_10225512 chr3R_10221597_10221748;chr3R_10233876_10233917 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 98.59 100.00 100.00 98.25 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 91.67 100.00 100.00 100.00 95.24 100.00 100.00 96.30 98.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CaMKI,I_chr4_466377_467256,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_466912_467256;chr4_467113_467256;chr4_466858_467256;chr4_466798_467256;chr4_466896_467256 chr4_466816_467256 chr4_467257_467272;chr4_466792_466797 0.00 0.00 0.00 10.00 NA 0.00 7.69 0.00 7.14 NA NA 0.00 0.00 0.00 0.00 0.00 33.33 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA NA NA K intron_retention rad50,ppk12 chr2R + chr2R_18311940_18311996 chr2R_18311939_18311940;chr2R_18311996_18311997 chr2R_18311837_18311939;chr2R_18311997_18312977 0.00 0.00 0.00 0.00 NA NA 1.69 0.00 3.64 NA 0.00 0.00 0.00 0.00 0.00 3.45 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 N intron_retention CG17184 chr3R - chr3R_7059293_7059355 chr3R_7059292_7059293;chr3R_7059355_7059356 chr3R_7059124_7059292;chr3R_7059356_7059373 39.13 NA NA NA NA NA NA 39.13 34.38 NA NA NA NA NA 28.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 41.18 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG17665 chr2R - chr2R_123842_123917 chr2R_123868_123917 chr2R_123918_124062;chr2R_123742_123841 92.86 89.47 92.31 91.89 100.00 91.67 90.00 91.43 95.00 NA 92.86 96.15 94.44 100.00 95.45 96.43 95.24 80.95 88.46 96.30 100.00 90.91 95.24 85.71 93.33 100.00 88.89 92.86 90.00 100.00 95.65 88.89 NA 97.14 100.00 88.24 95.24 90.91 91.67 95.83 100.00 85.71 94.12 95.00 90.00 92.31 89.47 100.00 90.32 84.21 81.48 100.00 90.91 87.50 90.91 95.00 87.10 100.00 K jcn_only_AA CG7971,I_chr3L_1659363_1659845,I_chr3L_1667736_1667806 chr3L - chr3L_1659991_1661108 chr3L_1660858_1661108 chr3L_1661109_1661165;chr3L_1659846_1659990 1.81 1.41 1.54 0.91 2.50 3.77 3.45 4.35 0.78 0.00 0.00 3.06 2.04 4.65 1.47 3.80 2.94 4.35 3.39 1.05 0.00 0.00 0.85 1.80 2.04 4.65 3.39 5.56 1.82 0.00 0.00 2.33 0.39 1.08 0.00 2.67 3.06 0.00 0.00 2.13 7.25 0.68 NA 0.96 1.90 2.54 1.23 0.86 0.00 10.87 0.00 1.92 0.00 2.04 1.18 1.82 5.26 1.21 N intron_retention CG2765,RI_chr2R_20849027_20852094,E_chr2R_20849271_20852090,E_chr2R_20851190_20852094 chr2R - chr2R_20851822_20852094 chr2R_20851821_20851822;chr2R_20852094_20852095 chr2R_20851782_20851821;chr2R_20852095_20852190 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 86.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 57.78 100.00 83.52 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.35 100.00 100.00 NA 100.00 100.00 100.00 82.35 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor sbb,I_chr2R_14193641_14243004,noncoding_7736,RI_chr2R_14243561_14244282,I_chr2R_14243561_14244715 chr2R - chr2R_14243561_14244642;chr2R_14243561_14244596 chr2R_14243561_14244715 chr2R_14243461_14243560;chr2R_14244716_14244766 12.50 NA 12.50 14.29 NA NA 9.09 5.56 24.14 NA NA 17.65 7.69 10.00 NA 9.09 33.33 14.29 10.00 20.00 NA 11.11 28.57 NA NA 16.67 NA NA NA NA 0.00 NA NA 11.76 NA NA NA NA NA NA NA 25.00 12.50 NA NA NA NA NA 23.53 NA NA 14.29 NA NA 0.00 NA 0.00 NA K alternative_acceptor CG13090 chr2L + chr2L_8517581_8517662 chr2L_8517581_8517659 chr2L_8517446_8517580;chr2L_8517663_8519162 91.67 NA 100.00 92.86 90.91 87.50 100.00 94.12 96.00 NA 84.62 94.74 88.89 100.00 85.71 90.91 88.89 90.91 92.86 92.00 NA NA NA 85.71 NA 93.33 NA 87.50 100.00 NA 100.00 85.71 100.00 89.47 NA NA 71.43 NA NA 91.30 NA 100.00 NA 85.71 NA 85.71 NA 100.00 93.75 66.67 NA NA NA NA 92.86 NA NA 91.67 K jcn_only_AD debcl,I_chr2R_2539027_2539493 chr2R + chr2R_2539636_2539692 chr2R_2539638_2539692 chr2R_2539693_2540353;chr2R_2539494_2539635 96.14 92.86 97.89 95.79 98.53 97.24 95.45 97.22 96.41 94.00 95.45 98.90 98.33 97.10 95.73 98.73 98.51 98.02 94.25 98.01 95.88 94.57 96.59 96.93 97.92 100.00 96.43 94.59 94.84 94.62 93.90 95.39 96.91 95.12 96.43 94.31 97.46 98.00 95.72 94.39 97.88 98.61 91.25 98.11 96.14 96.67 99.36 97.44 93.56 94.24 95.95 98.75 92.75 93.84 93.86 95.97 94.71 94.98 K jcn_only_AD Npc1a chr2L - chr2L_10218890_10220868;chr2L_10218890_10220796;chr2L_10218890_10220834 chr2L_10218890_10220692 chr2L_10218779_10218889;chr2L_10220869_10220873 73.12 76.36 71.21 71.70 79.63 78.95 76.26 74.40 73.94 69.23 73.33 63.44 70.27 82.61 62.71 78.18 80.70 78.00 70.67 52.56 77.78 64.71 60.00 63.27 72.00 72.92 78.26 NA 62.16 70.00 74.19 NA 66.04 77.94 75.00 56.41 48.78 74.07 71.43 80.00 84.00 70.34 73.47 68.92 NA 87.10 54.55 61.43 70.23 NA 75.00 74.42 NA NA 78.95 59.09 NA 82.05 K intron_retention CG3294,RI_chr2L_4795584_4795842 chr2L + chr2L_4795572_4795842 chr2L_4795571_4795572;chr2L_4795842_4795843 chr2L_4795484_4795571;chr2L_4795843_4795942 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 K alternative_donor Lam chr2L + chr2L_5542656_5543324;chr2L_5542864_5543324;chr2L_5542661_5543324 chr2L_5543273_5543324 chr2L_5543325_5543794;chr2L_5542527_5542655 1.92 2.86 0.00 2.08 0.00 3.85 4.00 4.17 3.33 1.92 3.03 1.61 3.57 3.70 2.17 5.71 5.00 0.00 2.78 2.94 0.00 0.93 1.35 1.47 2.27 2.94 2.94 1.67 1.82 2.33 2.86 2.94 1.39 1.69 0.00 0.00 0.00 0.00 2.22 2.34 2.70 1.18 3.03 1.72 0.00 1.67 0.00 1.65 2.35 0.00 1.85 0.00 2.50 0.00 2.70 1.82 0.00 2.90 K multi_cassette ssp4,I_chr2R_13409412_13410357,RI_chr2R_13409412_13411004,I_chr2R_13409412_13411328,I_chr2R_13409412_13411588,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13408434_13411588 chr2R_13408434_13410357;chr2R_13410466_13411004;chr2R_13411077_13411328;chr2R_13411404_13411588 chr2R_13410358_13410465;chr2R_13411005_13411076;chr2R_13411329_13411403 chr2R_13408151_13408433;chr2R_13411589_13411688 12.50 11.11 NA 17.65 7.69 10.00 1.72 27.27 12.00 7.14 6.67 20.00 6.67 11.11 14.29 20.00 25.00 14.29 18.18 40.00 8.33 7.14 15.38 14.29 NA 5.56 18.18 NA 4.76 10.00 16.67 NA 14.29 7.69 25.00 NA 14.29 18.18 6.25 3.45 7.69 13.04 7.69 7.69 22.22 20.00 NA NA 10.00 11.11 15.38 33.33 NA 12.50 7.14 10.00 14.29 28.57 K jcn_only_AD CG32103,I_chr3L_12398261_12403200 chr3L - chr3L_12407187_12407805 chr3L_12407187_12407801 chr3L_12407030_12407186;chr3L_12407806_12407901 35.96 28.57 NA 35.56 NA 20.83 55.00 45.71 25.42 NA 34.78 33.33 NA 30.77 41.38 40.91 39.13 12.50 39.13 40.48 23.81 29.17 40.91 39.29 NA 38.10 31.03 NA NA 28.57 26.32 NA NA 45.00 26.67 23.81 34.78 NA 40.00 28.57 NA 46.43 NA 40.00 NA 43.48 54.55 36.36 35.19 NA 43.24 47.62 25.00 NA 40.74 NA NA 34.62 K jcn_only_AA dwg,RI_chrX_2622297_2622355,RI_chrX_2622297_2622430,RI_chrX_2622435_2622577,RI_chrX_2627170_2627263 chrX + chrX_2622297_2622577;chrX_2622297_2622430 chrX_2622297_2622355 chrX_2622197_2622296;chrX_2622578_2622677 10.00 12.96 4.26 15.22 0.00 4.88 22.22 7.02 13.04 10.81 2.38 8.43 16.67 5.00 6.38 7.27 10.00 16.67 4.44 8.25 18.75 34.21 4.76 21.15 4.55 11.11 11.29 8.16 10.53 21.15 28.57 7.50 17.74 9.43 3.03 5.13 14.71 20.00 8.43 11.25 6.67 11.39 10.00 15.79 10.34 5.13 10.87 1.45 11.54 13.73 16.67 NA 6.00 5.66 9.76 13.21 8.70 3.95 K intron_retention CG33057,mkg-p,Oseg1 chr3L - chr3L_8397151_8397202 chr3L_8397150_8397151;chr3L_8397202_8397203 chr3L_8395407_8397150;chr3L_8397203_8397610 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 6.25 0.00 0.00 0.00 0.00 0.00 13.95 23.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K intron_retention CG12859 chr2R + chr2R_10644219_10644298 chr2R_10644218_10644219;chr2R_10644298_10644299 chr2R_10644036_10644218;chr2R_10644299_10644636 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 K intron_retention msk,I_chr3L_8109906_8110404 chr3L + chr3L_8110641_8110695 chr3L_8110640_8110641;chr3L_8110695_8110696 chr3L_8110405_8110640;chr3L_8110696_8111193 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7523 chr3R - chr3R_13495349_13495787 chr3R_13495348_13495349;chr3R_13495787_13495788 chr3R_13494947_13495348;chr3R_13495788_13496064 1.34 1.08 0.00 2.80 2.59 2.25 3.33 2.90 1.91 2.33 4.82 2.93 2.33 2.47 0.00 2.88 0.00 0.95 4.35 1.28 2.35 0.00 0.88 1.68 1.98 0.00 1.56 3.55 0.00 1.34 2.47 1.82 2.41 1.40 0.98 0.00 0.74 1.05 0.00 2.07 0.00 1.16 0.00 1.08 0.48 0.47 1.35 0.98 2.11 1.10 2.66 0.00 1.93 0.00 1.79 0.55 1.04 1.09 K alternative_donor Lmpt,RI_chr3L_16884531_16889334,I_chr3L_16904980_16905228 chr3L + chr3L_16858505_16859765;chr3L_16858538_16859765 chr3L_16858527_16859765 chr3L_16859766_16860046;chr3L_16858440_16858504 54.55 NA NA NA NA NA NA NA 50.00 NA NA 40.00 NA NA NA NA NA NA NA 71.43 NA 40.00 54.55 50.00 NA NA NA NA NA NA 57.14 NA NA 50.00 NA NA NA NA NA NA NA NA NA 44.44 NA 55.56 NA 54.55 57.14 NA 75.00 45.45 NA NA NA 83.33 NA NA K jcn_only_AD Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4833364_4834454;chrX_4833234_4834454;chrX_4833308_4834454;chrX_4833338_4834454 chrX_4833203_4834454 chrX_4834455_4834880;chrX_4833197_4833202 2.91 NA 9.09 2.70 0.00 NA 0.00 0.00 4.55 4.17 NA 8.33 0.00 0.00 NA 3.12 3.12 NA 2.50 5.88 NA 27.27 NA NA NA NA NA NA NA 6.45 0.00 NA 5.08 2.27 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA 0.00 4.44 NA NA NA NA NA 4.76 NA NA NA N alternative_last_exon sta chrX - chrX_1376514_1377290 chrX_1376949_1377290 chrX_1368708_1376513 chrX_1376706_1376948 chrX_1377291_1377379 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.99 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD unc-13,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_924098_924986 chr4_924098_924258 chr4_923998_924097;chr4_924987_925545 26.92 NA NA NA NA NA NA 34.62 NA NA NA 26.92 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 18.18 NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA 13.64 NA NA NA NA NA NA NA NA NA K alternative_donor Ect4,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8100030_8101385 chr3L_8100050_8101385 chr3L_8101386_8101485;chr3L_8099930_8100029 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 98.63 100.00 97.22 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 97.50 93.94 98.51 K cassette CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21275807_21281131;chr2L_21275807_21279883 chr2L_21275807_21277229;chr2L_21278430_21281131,chr2L_21278430_21279883 chr2L_21277230_21278429 chr2L_21275724_21275806;chr2L_21281132_21281337 11.11 9.62 6.25 7.50 13.64 8.00 12.20 11.76 11.59 21.05 3.57 11.54 6.90 9.38 9.09 6.56 14.29 9.68 10.81 7.69 3.85 11.63 18.00 16.67 16.13 6.98 12.77 10.34 11.54 9.52 13.33 11.11 11.11 12.73 12.50 33.33 23.33 22.73 20.59 5.60 7.69 8.33 15.38 10.00 11.11 15.38 10.81 10.87 12.07 9.26 13.21 13.79 14.29 18.52 8.33 10.81 14.29 9.26 K intron_retention I_chr2L_476332_525391,ush chr2L + chr2L_491359_525391 chr2L_491358_491359;chr2L_525391_525392 chr2L_490856_491358;chr2L_525392_525436 24.24 20.83 28.26 28.79 20.00 30.23 32.73 27.27 26.21 14.71 25.71 26.03 31.91 21.74 33.33 27.54 31.82 27.66 28.30 26.32 16.28 16.33 21.95 20.00 23.40 18.87 29.17 24.24 25.00 20.69 23.40 21.62 13.54 30.59 26.42 26.76 28.12 19.57 20.00 20.00 19.05 25.45 29.79 17.33 17.14 24.59 12.24 23.68 23.53 27.78 22.06 28.89 9.76 14.29 25.40 19.23 18.18 24.59 K jcn_only_AD Sap47 chr3R + chr3R_11779957_11780304 chr3R_11779978_11780304 chr3R_11780305_11780405;chr3R_11779880_11779956 77.11 82.05 70.00 63.27 82.93 92.31 65.38 77.11 74.39 NA 66.67 82.67 70.83 84.21 74.32 75.81 77.78 73.47 82.61 80.90 78.95 86.87 61.76 62.16 56.25 82.98 78.38 58.33 91.18 83.78 84.00 91.38 81.25 78.75 73.17 82.05 67.44 60.71 70.45 74.47 88.89 86.79 72.73 73.33 84.13 82.43 70.37 83.21 85.42 52.00 67.35 NA 79.41 61.90 74.55 66.67 67.74 90.70 K alternative_donor CG6569,RI_chr3R_17693077_17693126,I_chr3R_17694702_17694760 chr3R - chr3R_17692987_17693126 chr3R_17692987_17693059 chr3R_17692977_17692986;chr3R_17693127_17693226 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA 7.41 NA 3.85 NA NA NA NA NA 0.00 NA NA 2.00 NA NA NA NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention CG5871,NELF-A chr3R + chr3R_17047473_17047531 chr3R_17047472_17047473;chr3R_17047531_17047532 chr3R_17047048_17047472;chr3R_17047532_17048572 0.00 0.00 0.00 10.00 0.00 0.00 7.41 6.06 6.12 NA 0.00 3.92 0.00 0.00 3.45 24.32 0.00 0.00 NA 2.56 0.00 14.29 7.89 0.00 0.00 0.00 3.85 0.00 10.53 0.00 13.33 3.70 0.00 0.00 0.00 0.00 0.00 6.67 0.00 3.77 0.00 5.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.11 4.76 0.00 0.00 0.00 0.00 4.76 2.94 0.00 K intron_retention Adar,I_chrX_1668256_1682696,I_chrX_1674594_1674717 chrX + chrX_1672057_1672644 chrX_1672056_1672057;chrX_1672644_1672645 chrX_1671942_1672056;chrX_1672645_1672732 97.62 NA 100.00 90.00 NA 100.00 100.00 95.24 100.00 NA 73.33 100.00 NA NA 100.00 94.44 91.67 NA 100.00 94.12 83.33 NA 93.33 NA NA NA 100.00 NA NA NA 87.50 NA NA 100.00 NA NA NA NA NA 100.00 NA 93.75 NA NA NA NA NA 85.71 93.75 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention CG8334,I_chr3L_19870731_19870822 chr3L + chr3L_19873826_19873888 chr3L_19873825_19873826;chr3L_19873888_19873889 chr3L_19873358_19873825;chr3L_19873889_19874167 0.00 0.00 0.00 3.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 K intron_retention Ef1gamma,E_chr3R_25046218_25047549 chr3R + chr3R_25046302_25046364 chr3R_25046301_25046302;chr3R_25046364_25046365 chr3R_25046152_25046301;chr3R_25046365_25046787 0.38 0.11 0.24 0.41 0.31 0.27 0.34 0.25 0.32 0.46 0.14 0.24 0.00 0.16 0.32 0.38 0.00 0.23 0.31 0.43 0.39 5.50 0.43 0.39 0.86 0.41 0.59 1.19 2.51 0.82 0.78 0.71 0.74 0.18 0.62 1.80 0.47 0.19 0.37 0.62 1.68 0.15 0.24 0.46 0.73 0.40 0.32 1.16 0.33 0.52 0.57 0.38 0.25 0.31 0.18 0.32 0.15 0.69 K cassette CG9940 chrX - chrX_13595387_13612161 chrX_13595387_13601628;chrX_13601748_13612161 chrX_13601629_13601747 chrX_13595130_13595386;chrX_13612162_13612298 97.83 100.00 97.22 93.48 100.00 97.30 96.67 100.00 100.00 92.31 86.21 98.18 95.65 96.67 96.88 90.48 95.24 96.55 97.50 100.00 100.00 96.55 98.04 97.30 100.00 100.00 100.00 95.24 96.67 100.00 97.44 96.43 100.00 100.00 100.00 98.00 100.00 100.00 97.78 98.89 97.56 95.00 100.00 97.83 95.45 97.87 96.15 95.00 98.36 100.00 97.83 95.65 100.00 100.00 97.73 100.00 100.00 98.57 K intron_retention CG12024,REI_chr3L_1857404_1857509 chr3L + chr3L_1857404_1857464 chr3L_1857403_1857404;chr3L_1857464_1857465 chr3L_1857304_1857403;chr3L_1857465_1859050 15.79 NA NA NA NA NA NA NA 20.00 NA NA 7.69 NA NA NA NA NA NA NA 19.05 NA 14.29 14.29 12.50 NA NA 20.00 25.00 23.08 15.79 NA 0.00 8.00 NA NA 20.00 4.35 13.33 22.22 17.86 NA 17.65 NA 10.53 0.00 16.67 NA 6.25 36.36 23.53 17.65 14.29 NA NA NA NA NA 11.11 K intron_retention N chrX + chrX_3050498_3053135 chrX_3050497_3050498;chrX_3053135_3053136 chrX_3050293_3050497;chrX_3053136_3053266 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG6509 chr2L - chr2L_11516658_11516728 chr2L_11516658_11516722 chr2L_11516509_11516657;chr2L_11516729_11516801 100.00 NA 100.00 100.00 100.00 100.00 93.33 92.86 100.00 100.00 NA 92.31 90.91 100.00 100.00 100.00 91.67 100.00 100.00 94.12 100.00 100.00 94.44 93.33 100.00 100.00 100.00 100.00 100.00 92.31 85.71 NA 88.89 94.74 100.00 92.31 91.67 100.00 93.75 94.44 NA 90.48 100.00 100.00 NA 75.00 NA 100.00 100.00 NA 95.45 100.00 NA NA 100.00 100.00 NA NA K jcn_only_AD CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4840394;chr3R_4839215_4840589 chr3R_4839215_4840474 chr3R_4839038_4839214;chr3R_4840590_4840610 88.93 93.94 70.00 75.56 80.95 90.48 85.71 79.59 82.05 NA 77.14 80.56 69.23 72.73 81.48 93.62 65.22 81.48 89.29 83.64 87.50 93.06 91.67 NA NA 69.70 90.24 90.32 100.00 97.37 91.18 85.00 97.96 70.00 96.00 96.88 93.48 85.00 NA 93.41 96.43 68.12 71.43 100.00 66.67 94.29 93.75 89.47 73.68 85.29 93.75 96.88 96.30 NA 88.57 93.10 85.29 98.36 K alternative_acceptor CG8677 chr2L + chr2L_21226423_21226632 chr2L_21226423_21226629 chr2L_21224696_21226422;chr2L_21226633_21228340 100.00 91.67 100.00 100.00 100.00 97.06 100.00 100.00 97.78 100.00 100.00 97.44 100.00 100.00 100.00 96.43 94.44 95.83 96.43 100.00 90.91 96.00 97.44 100.00 100.00 95.65 100.00 100.00 100.00 100.00 95.24 95.24 96.88 94.29 96.67 95.24 100.00 100.00 95.12 100.00 100.00 98.15 94.74 100.00 100.00 100.00 100.00 96.23 100.00 96.15 100.00 94.12 100.00 100.00 100.00 100.00 90.00 100.00 K jcn_only_AD Rab23,I_chr3R_1508710_1508882 chr3R - chr3R_1508710_1508882;chr3R_1508710_1511119 chr3R_1508710_1510597 chr3R_1508610_1508709;chr3R_1511120_1511186 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor Pp2A-29B,I_chr2L_8367210_8367311,I_chr2L_8369561_8369715 chr2L + chr2L_8366124_8367095 chr2L_8366395_8367095 chr2L_8367096_8367209;chr2L_8366118_8366123 100.00 100.00 100.00 98.15 99.15 100.00 100.00 99.33 99.74 100.00 100.00 99.65 100.00 100.00 99.47 99.71 100.00 99.29 100.00 99.73 100.00 100.00 99.47 100.00 99.08 100.00 99.33 100.00 100.00 100.00 99.11 98.82 100.00 100.00 100.00 100.00 99.24 100.00 98.52 99.50 100.00 99.67 99.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_donor CG15173,RI_chr2L_19044304_19044369 chr2L - chr2L_19044084_19044153 chr2L_19044084_19044144 chr2L_19043946_19044083;chr2L_19044154_19044303 22.53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG18749,noncoding_15296,CG33722 chr3R + chr3R_4069864_4069923 chr3R_4069864_4069918 chr3R_4069831_4069863;chr3R_4069924_4070163 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 100.00 97.30 97.92 NA NA 98.08 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 98.28 NA 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 100.00 NA K intron_retention CG3847 chrX + chrX_6241503_6241558 chrX_6241502_6241503;chrX_6241558_6241559 chrX_6241500_6241502;chrX_6241559_6241564 98.21 98.08 97.87 98.81 97.50 97.56 98.68 98.91 98.20 97.22 97.50 97.67 97.62 98.25 98.08 98.81 97.78 95.24 100.00 100.00 94.74 92.31 100.00 97.78 100.00 98.21 98.48 100.00 98.00 97.67 100.00 97.83 100.00 98.82 100.00 97.96 100.00 100.00 96.30 98.46 97.96 99.06 98.11 100.00 94.12 98.88 98.04 100.00 99.01 96.36 97.96 100.00 100.00 100.00 98.41 97.44 98.48 97.92 K intron_retention Fis1,I_chr2R_1491917_1491981,I_chr2R_1491917_1492087,I_chr2R_1492154_1492214 chr2R - chr2R_1491917_1492021 chr2R_1491916_1491917;chr2R_1492021_1492022 chr2R_1491817_1491916;chr2R_1492022_1492032 37.86 NA NA 27.78 NA NA 30.77 43.75 47.06 NA NA 40.00 NA NA NA 50.00 NA NA 30.77 17.65 NA NA NA NA NA 40.00 35.71 NA NA NA 55.56 NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA 25.00 NA K alternative_acceptor PGRP-LA chr3L + chr3L_9330034_9330097 chr3L_9330034_9330085 chr3L_9329812_9330033;chr3L_9330098_9330321 36.36 33.33 NA 25.00 NA NA NA 36.36 42.86 NA NA NA NA NA NA 41.67 NA NA NA 66.67 NA 40.00 NA 35.71 NA NA NA 41.67 NA NA NA NA NA 45.45 NA NA 26.67 NA 30.77 28.57 NA 31.25 NA NA NA NA 35.71 NA 40.00 NA NA NA 38.46 NA NA 36.36 41.18 NA K alternative_acceptor cals,I_chr4_1136706_1138476,I_chr4_1136881_1136951,I_chr4_1139644_1142084,RI_chr4_1141233_1142084 chr4 - chr4_1136706_1136951 chr4_1136881_1136951 chr4_1136952_1137051;chr4_1136606_1136705 0.00 0.00 0.00 0.00 0.00 0.00 1.25 1.06 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 2.86 NA NA 0.00 0.00 0.00 NA 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K alternative_donor miple2,I_chr3L_274251_274594 chr3L + chr3L_274808_274866 chr3L_274814_274866 chr3L_274867_274969;chr3L_274595_274807 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.86 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 2.56 2.63 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 K intron_retention Sin3A,I_chr2R_8473578_8480185,I_chr2R_8479951_8480185,RI_chr2R_8479951_8480233 chr2R - chr2R_8479951_8480233 chr2R_8479950_8479951;chr2R_8480233_8480234 chr2R_8479851_8479950;chr2R_8480234_8480285 92.59 90.91 100.00 89.47 NA 100.00 94.74 92.59 87.50 NA NA 85.19 92.31 93.33 85.71 93.10 NA 92.86 100.00 95.45 91.67 77.78 93.33 90.91 100.00 94.74 90.00 100.00 88.89 90.00 94.74 NA 100.00 88.24 100.00 NA 88.89 100.00 100.00 95.24 NA 88.46 82.35 88.89 NA NA NA 94.74 91.18 90.00 90.00 100.00 NA NA 93.75 NA NA 91.67 K alternative_donor CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3088129_3088191;chr3L_3088139_3088191;chr3L_3088124_3088191 chr3L_3088120_3088191 chr3L_3088192_3088663;chr3L_3087957_3088119 98.97 98.75 97.89 97.73 97.50 100.00 100.00 99.45 98.42 96.97 98.13 99.53 100.00 97.12 96.38 98.55 98.97 99.24 100.00 98.18 100.00 100.00 98.60 99.41 99.08 99.21 98.71 100.00 100.00 100.00 96.85 98.02 100.00 96.81 100.00 98.51 98.14 98.50 98.44 100.00 100.00 97.86 97.85 99.45 99.46 98.34 99.56 100.00 99.13 98.59 98.65 100.00 98.60 100.00 100.00 100.00 97.57 98.19 K alternative_donor RpS23,I_chr2R_10103243_10103455,I_chr2R_10103616_10103938 chr2R - chr2R_10103616_10104034 chr2R_10103616_10103938 chr2R_10103516_10103615;chr2R_10104035_10104038 0.12 0.07 0.05 0.03 0.03 0.02 0.04 0.04 0.04 0.11 0.04 0.05 0.04 0.12 0.05 0.06 0.02 0.02 0.03 0.05 0.06 0.40 0.44 0.15 0.15 0.04 0.24 0.20 0.52 0.79 0.86 0.48 0.22 0.05 1.20 2.06 0.06 0.18 0.13 0.20 0.78 0.05 0.02 0.27 0.24 0.65 0.12 0.69 0.12 0.26 0.46 0.05 0.37 1.90 0.07 0.36 0.08 0.55 K intron_retention Dg chr2R - chr2R_11973126_11974435 chr2R_11973125_11973126;chr2R_11974435_11974436 chr2R_11973069_11973125;chr2R_11974436_11974487 14.59 16.67 22.22 4.44 NA NA 26.67 9.09 17.39 11.11 NA 36.84 NA 23.53 9.52 11.54 NA 5.56 25.00 5.49 NA 26.09 21.43 16.67 15.38 27.78 11.54 NA 6.25 8.33 NA NA 6.52 28.00 12.50 7.94 25.00 30.00 8.33 6.98 0.00 27.59 NA 13.79 0.00 6.67 NA 16.22 21.43 NA 26.67 NA 0.00 NA 16.67 NA NA NA K intron_retention CG8184,I_chrX_15620707_15620769 chrX + chrX_15617158_15617265 chrX_15617157_15617158;chrX_15617265_15617266 chrX_15615597_15617157;chrX_15617266_15618411 71.11 76.47 75.56 90.54 70.00 68.63 80.00 71.79 69.64 62.03 73.53 71.43 79.41 65.22 66.07 68.52 68.57 71.79 69.57 64.71 63.64 85.63 71.70 74.67 85.19 91.49 69.12 44.19 68.04 71.96 79.25 79.25 65.57 70.21 71.60 87.95 67.24 76.67 73.74 58.39 89.58 70.34 68.42 59.00 52.38 70.13 65.00 71.11 72.41 71.88 69.86 67.35 63.83 80.00 71.43 72.73 66.67 73.74 K jcn_only_AA SD23414,CG9125,I_chrX_16696492_16696589 chrX - chrX_16696492_16696589 chrX_16696503_16696589 chrX_16696590_16696689;chrX_16696392_16696491 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.19 100.00 97.78 100.00 100.00 100.00 100.00 98.82 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.77 98.72 100.00 100.00 99.12 100.00 100.00 100.00 98.80 98.39 98.96 99.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.06 100.00 100.00 100.00 100.00 100.00 100.00 98.82 98.99 99.50 K jcn_only_AA CG3499,I_chr2R_18772777_18772819 chr2R - chr2R_18772317_18772430 chr2R_18772326_18772430 chr2R_18772431_18772523;chr2R_18772243_18772316 42.25 41.51 34.21 61.02 50.98 32.14 36.29 40.54 47.86 59.38 47.83 39.33 45.95 37.50 37.88 46.74 45.16 41.03 43.04 38.55 41.67 46.67 45.98 32.35 70.59 53.70 30.85 31.58 45.71 36.96 44.78 48.57 54.00 39.39 40.91 42.11 42.25 39.62 50.98 44.74 58.33 41.96 47.27 29.69 38.64 42.25 35.14 40.00 41.38 46.88 43.28 41.67 43.33 29.03 51.43 46.67 48.44 46.94 K alternative_acceptor CG6664 chr3L - chr3L_17008359_17008842 chr3L_17008367_17008842 chr3L_17008843_17008976;chr3L_17008241_17008358 93.75 100.00 95.83 94.12 91.67 91.30 93.33 96.97 92.86 92.31 95.24 89.74 95.00 84.21 96.15 87.50 93.75 94.44 95.00 90.91 95.00 95.83 90.62 100.00 94.44 95.45 96.97 80.00 96.00 87.50 90.00 95.24 92.00 93.75 95.00 100.00 92.59 88.00 84.62 93.02 97.22 89.47 100.00 87.10 90.91 90.32 94.44 97.67 97.14 95.00 92.31 85.19 91.30 94.74 93.10 84.00 95.45 91.43 K alternative_donor CG5316 chr3R + chr3R_15229212_15229614 chr3R_15229545_15229614 chr3R_15229615_15229840;chr3R_15229203_15229211 100.00 100.00 100.00 100.00 90.91 93.75 97.22 100.00 100.00 83.33 93.75 100.00 94.44 100.00 100.00 97.06 95.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 88.24 92.31 95.24 100.00 100.00 100.00 100.00 100.00 100.00 93.33 93.75 100.00 97.30 100.00 100.00 93.75 100.00 100.00 95.24 90.00 100.00 100.00 K jcn_only_AA phtf,I_chr2R_2629598_2630209 chr2R + chr2R_2631050_2631157 chr2R_2631050_2631097 chr2R_2630542_2631049;chr2R_2631158_2632041 100.00 100.00 NA 96.77 100.00 NA 100.00 97.50 97.92 96.43 NA 100.00 100.00 100.00 96.43 96.15 NA 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 NA 96.77 90.00 NA 100.00 100.00 NA 100.00 97.44 NA 100.00 98.44 96.97 100.00 100.00 NA 100.00 NA 96.88 100.00 95.00 NA 95.35 100.00 92.00 100.00 91.30 95.00 NA 96.77 100.00 100.00 100.00 K intron_retention CG12734,I_chr3L_3183812_3183932,I_chr3L_3184645_3185360 chr3L + chr3L_3183800_3183932 chr3L_3183799_3183800;chr3L_3183932_3183933 chr3L_3183712_3183799;chr3L_3183933_3183997 2.20 0.00 0.00 7.14 6.67 0.00 2.78 10.71 5.63 0.00 0.00 4.44 0.00 0.00 6.45 7.41 0.00 0.00 9.09 5.45 7.69 0.00 0.00 3.28 0.00 8.33 6.12 8.16 2.94 5.56 0.00 3.45 2.86 5.41 0.00 0.00 4.44 0.00 2.20 8.16 0.00 1.72 0.00 4.76 0.00 2.70 2.13 0.00 8.93 3.92 0.00 0.00 0.00 0.00 3.23 2.00 4.65 0.00 K cassette spin,I_chr2R_12013288_12013847 chr2R + chr2R_12024072_12024709 chr2R_12024072_12024338;chr2R_12024535_12024709 chr2R_12024339_12024534 chr2R_12023930_12024071;chr2R_12024710_12025743 1.91 2.29 1.64 3.95 1.48 2.96 2.22 1.54 2.47 1.82 2.08 4.96 0.00 3.39 0.61 0.64 2.56 1.67 1.24 1.97 2.65 1.39 1.47 2.03 1.40 1.61 3.70 8.66 2.63 2.50 1.79 1.85 2.24 2.18 1.83 2.22 2.89 2.26 1.45 0.68 2.04 2.52 2.63 1.41 1.73 1.91 1.64 0.00 1.95 2.72 1.79 1.68 0.78 2.05 1.80 2.48 1.46 0.75 K intron_retention CG13745,I_chr2R_4825500_4825553,I_chr2R_4825500_4825702 chr2R - chr2R_4825500_4825557 chr2R_4825499_4825500;chr2R_4825557_4825558 chr2R_4825400_4825499;chr2R_4825558_4825646 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 5.56 NA NA NA 4.76 NA NA 0.00 3.70 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention Unr,DMG4-MB6.chr3L.15.021 chr3L - chr3L_8429811_8429864 chr3L_8429810_8429811;chr3L_8429864_8429865 chr3L_8429346_8429810;chr3L_8429865_8430072 97.34 96.70 96.30 99.43 96.43 98.80 98.50 95.16 97.34 97.96 98.41 96.74 96.25 98.70 97.44 97.39 96.00 96.39 97.62 97.89 100.00 99.11 96.20 96.40 97.73 97.01 97.84 95.24 94.51 96.63 97.75 97.06 98.25 95.51 99.00 98.31 97.50 94.34 94.04 94.93 95.92 95.87 93.98 93.69 97.14 95.16 97.44 97.87 97.85 97.50 97.44 97.22 100.00 97.56 93.52 97.73 97.06 97.62 K alternative_donor CG4199,I_chrX_1962457_1964222 chrX - chrX_1965614_1967409;chrX_1965614_1967149;chrX_1965614_1966582 chrX_1965614_1965872 chrX_1965393_1965613;chrX_1967410_1967460 100.00 97.06 96.67 100.00 100.00 100.00 93.94 100.00 100.00 95.45 100.00 98.08 92.86 100.00 100.00 100.00 100.00 100.00 100.00 98.63 100.00 90.00 98.04 100.00 100.00 100.00 100.00 97.06 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 98.18 100.00 98.08 97.10 96.00 98.46 95.24 97.56 100.00 100.00 100.00 100.00 98.36 100.00 100.00 96.77 97.22 100.00 100.00 97.06 100.00 97.44 K intron_retention CREF_chr3R_5589662_5589762,CG8481 chr3R + chr3R_5593863_5594466 chr3R_5593862_5593863;chr3R_5594466_5594467 chr3R_5593583_5593862;chr3R_5594467_5594493 42.11 NA 23.08 46.15 NA NA NA 30.77 37.50 NA 30.77 40.00 NA NA NA NA NA NA NA 46.67 NA 63.64 NA NA NA NA NA NA NA NA NA 33.33 23.08 42.11 NA NA NA NA NA 47.62 NA 50.00 NA 46.15 26.67 50.00 NA 46.15 NA NA NA NA NA NA NA NA NA NA K intron_retention kis,RI_chr2L_242745_242800,I_chr2L_242926_250756 chr2L - chr2L_242745_250756 chr2L_242744_242745;chr2L_250756_250757 chr2L_242645_242744;chr2L_250757_250774 0.00 0.00 6.45 6.67 NA 7.69 11.11 11.11 3.57 NA NA 4.00 8.00 0.00 9.09 3.45 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA 0.00 4.76 NA NA 0.00 NA NA 0.00 NA 9.30 0.00 NA NA NA NA 0.00 6.52 NA NA 0.00 NA NA 0.00 NA NA NA N cassette cher,I_chr3R_12927155_12927241,I_chr3R_12927155_12927867,I_chr3R_12927155_12927890,I_chr3R_12943024_12948119 chr3R - chr3R_12926801_12929977 chr3R_12926801_12927073;chr3R_12927155_12929977 chr3R_12927074_12927154 chr3R_12926714_12926800;chr3R_12929978_12930113 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Nc73EF,I_chr3L_16950628_16951334,I_chr3L_16950952_16952198,I_chr3L_16951588_16952198,I_chr3L_16951626_16952198,I_chr3L_16952138_16952198,I_chr3L_16952985_16955434,I_chr3L_16953768_16954599 chr3L + chr3L_16950628_16952198 chr3L_16950627_16950628;chr3L_16952198_16952199 chr3L_16950617_16950627;chr3L_16952199_16952207 0.00 NA 4.17 4.35 0.00 NA 10.00 3.23 3.28 NA NA 2.86 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 4.76 0.00 0.00 0.00 NA 0.00 9.52 NA NA NA NA NA 0.00 0.00 0.00 6.25 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 2.56 0.00 2.27 5.56 NA NA 0.00 0.00 0.00 NA N intron_retention growl chr3R + chr3R_229003_229955 chr3R_229002_229003;chr3R_229955_229956 chr3R_228731_229002;chr3R_229956_233725 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA 100.00 NA 100.00 NA 66.67 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA NA 100.00 NA 100.00 K jcn_only_AD vig chr2L - chr2L_15067690_15067915;chr2L_15067690_15067995;chr2L_15067690_15067868;chr2L_15067690_15068029;chr2L_15067690_15067999 chr2L_15067690_15067952 chr2L_15066937_15067689;chr2L_15068030_15068031 3.51 5.36 1.90 3.65 3.73 4.55 3.14 7.66 2.69 6.00 3.45 3.85 3.03 3.70 2.10 4.00 2.73 3.85 1.16 3.74 3.97 2.52 0.00 3.70 0.00 2.48 0.00 4.14 9.09 4.17 2.11 9.52 4.12 1.64 2.86 6.49 5.98 7.25 1.45 7.12 5.41 3.32 3.51 3.85 4.40 2.38 1.32 4.64 2.95 0.00 2.97 7.06 2.88 0.00 2.26 2.90 2.30 5.66 K intron_retention Tsp42Ed chr2R - chr2R_2898360_2899096 chr2R_2898359_2898360;chr2R_2899096_2899097 chr2R_2898168_2898359;chr2R_2899097_2899359 9.82 7.50 7.38 10.07 6.82 8.04 6.87 6.73 8.70 14.67 11.90 6.46 6.98 8.20 6.43 6.49 8.24 8.33 3.87 9.90 8.18 7.56 13.87 12.09 9.82 5.17 14.87 14.29 14.57 13.38 10.44 16.13 16.02 6.93 10.24 10.07 15.08 4.67 9.94 17.33 13.64 5.67 3.70 16.67 13.89 13.29 11.92 14.67 4.89 9.46 13.33 9.82 9.42 12.93 7.38 9.80 7.52 10.55 K intron_retention CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4985425_4985861 chr2L_4985424_4985425;chr2L_4985861_4985862 chr2L_4985358_4985424;chr2L_4985862_4985954 2.54 2.13 0.00 0.00 0.00 0.00 3.12 1.27 3.70 0.00 10.53 3.12 5.41 0.00 0.00 9.76 6.06 0.00 4.35 3.33 0.00 2.13 1.37 3.12 0.00 0.00 1.32 9.52 4.35 2.13 3.92 NA 0.00 5.45 2.94 1.82 0.00 0.00 0.00 8.57 5.71 4.35 8.82 5.66 0.00 3.12 0.00 6.38 4.35 4.35 3.39 5.71 0.00 4.55 1.85 9.68 0.00 0.00 K alternative_donor CG5482,I_chr2R_14519136_14519239 chr2R - chr2R_14519136_14519367;chr2R_14519136_14519239 chr2R_14519136_14519254 chr2R_14519036_14519135;chr2R_14519368_14519403 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 96.15 93.33 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 NA 90.91 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG10737 chr2R + chr2R_15057912_15058122 chr2R_15057912_15057980 chr2R_15057784_15057911;chr2R_15058123_15058183 0.00 NA NA 0.00 NA NA 5.00 0.00 7.41 NA NA 7.41 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 4.35 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG2162,I_chr3L_3039516_3039562 chr3L + chr3L_3039516_3039578 chr3L_3039516_3039562 chr3L_3039416_3039515;chr3L_3039579_3039662 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 1.20 1.08 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 1.45 0.00 0.00 2.99 0.00 0.00 0.00 0.00 0.00 1.10 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.69 0.00 0.00 0.00 0.00 1.00 0.92 0.00 0.00 1.44 0.00 0.00 0.00 0.00 K alternative_last_exon CG42399,CG3709,F_chr2L_147711_148337,CG33635 chr2L - chr2L_149227_155127 chr2L_155060_155127 chr2L_148092_149226 chr2L_151115_155059 chr2L_155128_155178 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention fry,I_chr3L_9636648_9656042 chr3L - chr3L_9656618_9656720 chr3L_9656617_9656618;chr3L_9656720_9656721 chr3L_9656473_9656617;chr3L_9656721_9656890 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 3.45 NA NA 0.00 0.00 0.00 NA K intron_retention TfIIFalpha,I_chr3R_2211939_2212057 chr3R + chr3R_2207328_2207403 chr3R_2207327_2207328;chr3R_2207403_2207404 chr3R_2206408_2207327;chr3R_2207404_2207991 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.67 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.80 K intron_retention sol chrX + chrX_21221878_21222886 chrX_21221877_21221878;chrX_21222886_21222887 chrX_21221327_21221877;chrX_21222887_21223512 11.11 8.51 12.90 14.29 12.50 12.00 19.57 17.39 9.84 5.88 17.24 11.67 20.00 21.43 12.50 21.21 11.43 17.24 16.67 12.15 19.23 22.62 7.41 9.46 12.24 22.73 9.52 13.51 7.06 7.69 8.47 2.63 4.73 11.59 10.64 18.18 4.13 9.09 9.64 6.13 2.00 11.11 22.73 8.86 7.14 10.61 4.35 7.33 11.76 0.00 16.39 13.89 7.14 11.11 10.00 9.68 9.09 6.82 K jcn_only_AA TwdlG,RI_chr3R_75576_75628 chr3R - chr3R_75568_75628 chr3R_75576_75628 chr3R_75629_75728;chr3R_75476_75567 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.17 NA NA NA NA NA NA NA NA K cassette Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8445229_8456103 chr3L_8445229_8455071;chr3L_8455204_8456103 chr3L_8455072_8455203 chr3L_8445200_8445228;chr3L_8456104_8456203 100.00 100.00 100.00 95.83 100.00 100.00 87.50 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 K intron_retention Prp19 chr2R - chr2R_14338331_14338394 chr2R_14338330_14338331;chr2R_14338394_14338395 chr2R_14336977_14338330;chr2R_14338395_14338503 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 8.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor SdhB chr2R + chr2R_2695323_2695594 chr2R_2695323_2695542 chr2R_2695116_2695322;chr2R_2695595_2696031 0.89 0.41 0.90 0.45 0.00 0.00 1.97 0.00 0.33 0.73 0.66 0.29 0.00 0.70 0.79 0.00 0.00 1.10 0.00 0.76 1.13 2.42 1.01 0.89 1.32 2.42 0.96 1.91 0.60 1.10 1.32 1.33 1.20 0.48 1.49 3.33 0.63 1.12 1.12 1.43 3.03 0.27 0.00 0.58 2.35 1.42 1.15 1.82 0.33 1.50 0.74 1.42 0.46 0.67 0.99 0.36 0.25 1.05 K jcn_only_AA CG32982,I_chr2L_9127467_9148754,EF_chr2L_9135385_9148841,F_chr2L_9149162_9154658 chr2L + chr2L_9162709_9163294;chr2L_9162709_9163143 chr2L_9162709_9163140 chr2L_9162363_9162708;chr2L_9163295_9163398 95.00 95.31 96.15 94.29 97.44 96.30 93.88 91.38 91.01 93.18 100.00 100.00 NA 97.37 93.02 96.55 96.15 96.30 100.00 96.67 96.15 94.24 96.15 91.67 95.12 92.00 92.77 93.33 95.45 96.67 97.56 94.00 92.98 90.91 97.87 94.55 92.16 95.83 95.24 93.75 94.59 93.83 95.00 96.06 97.78 94.25 92.13 91.43 91.04 93.51 94.68 98.04 90.32 98.68 95.00 96.70 91.78 96.25 K intron_retention Aats-arg chrX - chrX_15738015_15738072 chrX_15738014_15738015;chrX_15738072_15738073 chrX_15737886_15738014;chrX_15738073_15738078 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.52 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpS15Aa chrX - chrX_13231573_13231639 chrX_13231572_13231573;chrX_13231639_13231640 chrX_13231538_13231572;chrX_13231640_13231706 56.36 57.89 59.09 76.47 50.00 44.00 85.44 45.65 59.42 52.94 61.90 47.50 50.00 48.28 60.61 73.68 60.87 42.31 56.10 60.00 55.56 80.00 86.67 70.00 81.82 74.58 93.75 94.59 92.94 NA 56.67 45.45 NA 52.63 90.00 NA 65.38 80.00 62.50 41.67 44.44 56.36 55.00 NA NA 76.47 43.75 33.33 41.07 52.00 76.19 50.00 45.00 NA 46.67 47.83 49.09 36.36 K alternative_donor row,I_chr2R_11098574_11098633 chr2R - chr2R_11098574_11099081 chr2R_11098574_11098633 chr2R_11098474_11098573;chr2R_11099082_11099172 11.63 11.63 7.14 20.69 8.33 12.90 16.33 14.49 15.79 14.29 10.00 14.47 31.82 28.57 10.20 17.14 12.20 13.04 12.20 11.57 18.42 5.26 9.23 12.50 10.00 8.89 13.64 9.09 6.67 4.41 8.89 8.00 4.17 16.67 12.50 4.44 8.93 8.51 9.09 10.23 7.89 13.92 19.23 11.54 8.00 10.00 24.14 3.49 15.91 14.00 14.04 11.63 12.50 24.00 9.26 20.00 26.47 4.46 K cassette CG6448,I_chr2L_22156816_22158491 chr2L + chr2L_22156816_22158512 chr2L_22156816_22157022;chr2L_22157056_22158512 chr2L_22157023_22157055 chr2L_22156716_22156815;chr2L_22158513_22158591 1.30 0.73 2.68 3.18 1.87 2.38 1.44 1.22 1.62 0.00 10.98 1.78 1.19 1.18 1.60 1.01 0.89 1.41 0.94 3.12 4.08 1.30 1.17 1.16 1.94 2.06 1.86 2.56 2.53 0.78 0.00 0.00 0.00 1.54 0.99 1.72 1.52 0.72 1.52 0.53 0.00 0.50 1.30 0.64 1.37 0.81 1.43 1.41 0.60 1.33 1.12 1.41 0.93 0.93 0.82 1.67 0.58 0.00 K intron_retention rho chr3L + chr3L_1465823_1466489 chr3L_1465822_1465823;chr3L_1466489_1466490 chr3L_1465466_1465822;chr3L_1466490_1466907 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 10.00 2.78 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K alternative_acceptor Pdsw chr2L + chr2L_3466229_3466315 chr2L_3466229_3466297 chr2L_3466160_3466228;chr2L_3466316_3466416 6.94 3.45 6.94 6.06 4.76 3.92 8.91 5.36 3.12 7.69 7.14 5.98 4.62 5.41 4.00 4.65 5.41 5.33 3.85 5.67 3.39 9.30 4.44 7.59 24.24 27.08 21.21 15.00 29.17 20.00 4.05 10.71 14.29 1.68 7.69 32.14 4.46 4.08 11.94 8.00 44.44 3.66 5.36 9.76 6.52 19.05 8.22 11.11 4.72 9.62 11.11 6.94 13.64 7.84 6.17 6.74 6.94 9.38 K alternative_donor CG1572,RI_chrX_11450380_11450442,I_chrX_11450380_11452520 chrX - chrX_11450380_11450442;chrX_11450380_11452571 chrX_11450380_11452565 chrX_11450280_11450379;chrX_11452572_11452620 2.27 2.12 2.20 2.31 1.74 1.71 1.77 2.38 1.82 3.07 1.78 2.27 1.62 2.11 4.49 2.11 1.41 1.67 2.01 2.54 1.95 1.99 2.61 1.97 2.36 1.92 2.84 3.69 3.51 3.05 1.79 2.98 2.49 1.68 2.16 2.19 2.00 1.74 1.40 3.11 2.37 1.88 1.54 2.30 3.18 2.70 2.64 2.62 2.51 2.38 2.77 1.73 2.98 3.27 2.16 2.30 2.31 2.69 K intron_retention Zyx102EF,I_chr4_1078380_1078835,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1078380_1078432 chr4_1078379_1078380;chr4_1078432_1078433 chr4_1078280_1078379;chr4_1078433_1078643 0.00 0.00 0.00 5.77 0.00 11.11 0.00 4.65 3.03 NA NA 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 2.38 0.00 NA 0.00 0.00 NA 4.00 NA NA NA NA 0.00 13.33 NA 2.17 NA NA NA NA NA 7.14 NA 12.77 0.00 0.00 5.56 0.00 0.00 NA 11.32 3.85 7.14 0.00 0.00 0.00 0.00 4.17 0.00 0.00 K intron_retention RI_chr3L_11108913_11109028,Ufd1-like chr3L - chr3L_11115965_11116021 chr3L_11115964_11115965;chr3L_11116021_11116022 chr3L_11115064_11115964;chr3L_11116022_11116276 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 1.69 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Hcf,I_chr4_390281_391716,I_chr4_391783_391844,I_chr4_391787_391885,I_chr4_391984_392875 chr4 + chr4_390591_391716 chr4_390590_390591;chr4_391716_391717 chr4_390436_390590;chr4_391717_391782 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 0.00 1.41 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 K alternative_acceptor Mlh1,I_chr2R_4058619_4058671 chr2R + chr2R_4058619_4058678 chr2R_4058619_4058671 chr2R_4058519_4058618;chr2R_4058679_4058771 87.50 NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA K jcn_only_AD Hr39,I_chr2L_21256047_21256260 chr2L + chr2L_21237347_21238280;chr2L_21237385_21238280;chr2L_21237421_21238280;chr2L_21237397_21238280;chr2L_21237405_21238280 chr2L_21237364_21238280 chr2L_21238281_21238529;chr2L_21237247_21237346 2.86 NA NA 2.86 NA NA 5.00 3.23 0.00 NA NA 2.86 0.00 NA NA 0.00 NA NA NA 4.44 NA NA 5.88 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 8.33 0.00 NA NA NA NA 0.00 NA 0.00 NA 4.17 NA NA NA 3.33 2.38 NA 4.17 NA NA NA 4.17 NA NA NA K intron_retention GXIVsPLA2,I_chr3L_15948429_15948487,I_chr3L_15950680_15950738 chr3L + chr3L_15948410_15948487 chr3L_15948409_15948410;chr3L_15948487_15948488 chr3L_15948329_15948409;chr3L_15948488_15948587 33.33 NA NA 35.71 NA NA 23.08 NA NA NA NA 35.71 NA NA NA 26.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA 38.46 NA NA NA NA NA NA 11.11 NA NA NA NA NA NA NA NA NA K jcn_only_AA gem,I_chr2R_6015083_6015660 chr2R + chr2R_6016198_6016327 chr2R_6016198_6016288 chr2R_6016086_6016197;chr2R_6016328_6016534 20.41 22.86 17.39 26.98 28.95 24.78 16.27 19.61 17.47 23.08 20.41 18.75 20.63 26.83 18.66 20.13 23.02 25.00 20.18 17.70 19.30 38.85 14.93 23.40 21.32 38.39 10.95 20.93 33.33 25.55 25.29 17.11 22.55 18.39 28.32 17.69 26.27 23.00 19.56 23.91 24.14 21.83 15.70 19.90 18.69 18.03 13.70 14.63 15.41 19.20 20.18 27.03 17.47 18.46 22.08 14.40 20.86 23.40 K alternative_last_exon lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6389565_6389862 chr2R_6389735_6389862 chr2R_6387703_6389564 chr2R_6389602_6389734 chr2R_6389863_6389967 11.54 9.09 16.67 15.38 0.00 7.69 29.63 14.29 16.13 13.33 9.09 15.38 23.08 16.67 17.65 23.08 10.00 8.33 25.00 10.71 20.00 17.39 15.00 11.11 18.75 27.27 6.25 6.67 11.54 5.56 16.67 7.69 13.64 10.00 10.00 23.08 8.00 0.00 5.00 11.11 16.67 8.70 11.11 16.67 0.00 8.33 15.38 14.29 22.22 0.00 20.83 25.00 9.09 0.00 0.00 11.11 8.33 17.65 K intron_retention CG4829,I_chrX_16717240_16717547 chrX + chrX_16719597_16719669 chrX_16719596_16719597;chrX_16719669_16719670 chrX_16718955_16719596;chrX_16719670_16720526 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.23 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8455204_8456103 chr3L_8455203_8455204;chr3L_8456103_8456104 chr3L_8455194_8455203;chr3L_8456104_8456203 6.51 NA NA 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG8675,Fim,I_chrX_17193096_17195392 chrX - chrX_17183071_17185283 chrX_17183070_17183071;chrX_17185283_17185284 chrX_17181960_17183070;chrX_17185284_17185735 3.08 0.00 5.13 0.00 0.00 0.00 2.94 3.39 4.76 0.00 6.67 3.70 12.50 4.00 0.00 3.08 0.00 0.00 5.41 4.35 4.65 5.13 3.28 5.26 0.00 4.76 5.00 0.00 NA 4.76 0.00 NA 6.25 3.57 5.00 NA 0.00 0.00 0.00 4.65 6.67 1.64 0.00 0.00 5.26 0.00 NA 0.00 5.88 0.00 2.27 0.00 NA 7.69 0.00 0.00 NA 10.53 N multi_cassette CG14709,F_chr3R_7396835_7396923,F_chr3R_7405343_7405539 chr3R + chr3R_7395557_7397989 chr3R_7395557_7396748;chr3R_7396835_7396896;chr3R_7397045_7397107;chr3R_7397284_7397336;chr3R_7397528_7397989 chr3R_7396749_7396834;chr3R_7396897_7397044;chr3R_7397108_7397283;chr3R_7397337_7397527 chr3R_7394972_7395556;chr3R_7397990_7399584 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 81.54 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention homer chr2L - chr2L_6720943_6720996 chr2L_6720942_6720943;chr2L_6720996_6720997 chr2L_6720527_6720942;chr2L_6720997_6721131 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 NA 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K alternative_donor Gel,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_66437_66599 chr3R_66533_66599 chr3R_66600_66699;chr3R_66433_66436 2.52 1.95 3.24 3.83 3.69 2.79 2.51 1.18 2.53 2.63 3.95 3.23 4.32 1.13 2.52 2.47 2.53 2.31 1.89 2.62 2.88 3.82 2.33 2.70 2.56 2.03 3.06 4.08 5.82 1.94 2.45 2.63 1.13 2.74 2.33 1.47 4.72 2.73 2.27 1.88 1.64 1.82 2.53 2.63 1.60 1.54 2.14 2.01 2.22 3.00 3.30 3.88 1.98 2.34 1.65 1.77 2.95 1.28 K jcn_only_AD Shawn_Tyler,CG14213 chrX + chrX_19533110_19533177 chrX_19533117_19533177 chrX_19533178_19533426;chrX_19532929_19533109 14.29 NA NA 21.88 NA NA NA 19.23 25.93 NA NA 17.65 NA NA NA NA NA NA NA 24.00 4.76 25.00 21.43 12.50 NA NA NA NA NA NA 14.29 NA NA 6.67 NA NA 4.17 4.55 20.83 22.86 NA 28.00 NA 4.76 NA 10.00 NA NA 13.79 13.64 4.76 15.00 NA NA NA NA 13.04 NA K alternative_acceptor TepIV,EI_chr2L_19548696_19549582 chr2L + chr2L_19553916_19553969;chr2L_19553916_19553975 chr2L_19553916_19553978 chr2L_19553362_19553915;chr2L_19553979_19556092 1.92 4.88 6.15 0.90 1.75 0.00 3.09 1.49 4.46 4.08 1.37 1.61 1.05 1.47 4.11 0.78 1.56 0.00 2.53 3.41 3.08 2.67 0.81 1.14 0.00 1.75 1.18 2.21 2.35 2.15 1.20 4.94 1.92 0.93 1.85 8.22 2.70 1.89 1.18 4.10 0.83 2.37 3.28 2.11 2.65 2.05 3.37 3.01 2.13 1.94 1.22 1.69 1.79 4.08 3.80 1.39 0.74 1.35 K alternative_acceptor CG6697 chr3R + chr3R_18887542_18887603 chr3R_18887542_18887598 chr3R_18887241_18887541;chr3R_18887604_18888474 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 91.67 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 NA 100.00 100.00 100.00 93.33 100.00 100.00 K jcn_only_AD CG11658,I_chr3L_11704048_11704107 chr3L - chr3L_11700672_11701407;chr3L_11700672_11701491 chr3L_11700672_11701507 chr3L_11700405_11700671;chr3L_11701508_11701663 90.03 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 84.62 NA NA NA 95.45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG8067 chr2R + chr2R_9871329_9871394 chr2R_9871329_9871389 chr2R_9871150_9871328;chr2R_9871395_9871645 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 100.00 90.00 100.00 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 92.86 NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 K intron_retention CG17838,I_chr3R_16625404_16631668 chr3R + chr3R_16628274_16631668 chr3R_16628273_16628274;chr3R_16631668_16631669 chr3R_16628255_16628273;chr3R_16631669_16631768 19.26 11.76 22.22 20.00 NA NA 27.78 42.86 14.29 6.25 NA 21.05 14.29 NA NA 21.43 NA 23.08 NA 23.08 NA NA 12.50 NA NA 23.53 12.50 30.77 11.76 21.43 33.33 NA 16.67 30.43 NA 5.00 0.00 NA 12.50 25.00 NA 21.05 NA 13.33 NA NA NA 16.67 18.52 NA 17.65 NA NA NA 25.00 NA NA 15.00 K cassette CG18317,RI_chr2L_1718492_1723881,I_chr2L_1718904_1718995,RI_chr2L_1718904_1724234 chr2L - chr2L_1718492_1723881 chr2L_1718492_1718739;chr2L_1718904_1723881 chr2L_1718740_1718903 chr2L_1718421_1718491;chr2L_1723882_1723981 97.44 96.88 100.00 87.50 100.00 100.00 100.00 94.44 97.14 96.43 100.00 93.55 100.00 90.00 100.00 100.00 91.67 100.00 100.00 94.87 100.00 90.62 100.00 97.73 100.00 90.91 100.00 97.14 96.15 100.00 100.00 93.33 97.30 95.00 100.00 100.00 100.00 97.30 98.00 96.55 100.00 96.55 80.00 100.00 96.77 96.30 97.44 100.00 96.43 96.77 100.00 100.00 96.30 96.67 94.12 100.00 100.00 93.75 K intron_retention CG7546 chr3L + chr3L_7504729_7504804 chr3L_7504728_7504729;chr3L_7504804_7504805 chr3L_7504611_7504728;chr3L_7504805_7505016 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD I_chr3L_18892015_18892405,RpL26,I_chr3L_18892244_18892405,I_chr3L_18892340_18892405,I_chr3L_18892434_18892499 chr3L + chr3L_18892240_18892405 chr3L_18892340_18892405 chr3L_18892406_18892433;chr3L_18892172_18892239 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.31 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.88 0.00 0.00 0.00 0.00 0.00 3.18 0.00 0.00 0.00 0.00 0.00 0.59 0.95 0.00 0.00 0.00 0.19 0.73 0.06 0.00 0.45 0.20 0.52 0.56 0.34 0.00 0.63 1.22 0.00 0.46 1.20 0.00 1.14 0.34 0.28 K jcn_only_AD Myb,RI_chrX_15752571_15753225 chrX - chrX_15751579_15751673;chrX_15751579_15751709;chrX_15751579_15751749 chrX_15751579_15751682 chrX_15749823_15751578;chrX_15751750_15751876 6.92 1.92 4.76 5.97 3.77 6.52 10.45 6.93 7.48 3.33 12.82 5.30 5.00 9.59 1.52 5.96 10.53 2.22 3.64 6.56 12.50 3.85 10.34 5.13 6.90 4.55 7.69 4.76 6.06 10.71 9.09 16.33 19.72 6.54 9.09 0.00 10.00 5.56 5.13 7.79 8.33 9.78 10.64 1.61 10.42 6.45 8.11 7.94 4.32 NA 8.33 10.53 5.56 18.18 4.05 10.71 10.34 6.96 K intron_retention alc chr2R - chr2R_5023211_5023269 chr2R_5023210_5023211;chr2R_5023269_5023270 chr2R_5023142_5023210;chr2R_5023270_5023364 0.82 0.00 1.52 0.00 0.00 1.87 1.68 1.36 2.06 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 1.89 1.92 0.43 2.04 0.00 0.82 0.80 2.15 0.00 1.54 2.35 1.06 0.00 0.00 1.54 0.00 1.42 0.00 1.83 1.32 0.00 0.92 1.07 0.00 1.79 0.00 0.00 0.82 0.99 0.54 1.14 1.03 0.88 1.57 0.00 0.00 0.00 1.65 0.00 1.06 0.40 N alternative_donor None chrU - chrU_7543786_7544888 chrU_7543786_7543849 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG1598 chr2R - chr2R_3426218_3426276 chr2R_3426217_3426218;chr2R_3426276_3426277 chr2R_3425719_3426217;chr2R_3426277_3426717 1.03 1.03 0.00 4.20 0.00 0.00 5.22 2.26 1.05 3.92 0.00 0.76 1.56 0.00 0.00 1.15 0.00 4.35 0.00 0.82 2.17 7.41 0.72 1.61 0.00 2.78 4.27 6.58 2.13 1.09 2.38 0.00 1.12 0.00 0.00 0.00 1.27 1.47 1.24 0.00 3.75 0.61 1.25 0.00 0.00 1.61 0.77 3.17 2.84 2.40 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG32016,I_chr4_972691_972763,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_972704_972763;chr4_972719_972763 chr4_972691_972763 chr4_972764_972863;chr4_972619_972690 0.00 0.00 0.00 0.00 0.00 2.70 1.11 0.00 0.75 NA 3.85 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 2.17 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 3.08 0.00 0.00 0.00 2.86 0.00 0.00 1.82 2.33 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Mtch,RI_chr3L_184729_185366,I_chr3L_185367_185925 chr3L + chr3L_184682_184777 chr3L_184681_184682;chr3L_184777_184778 chr3L_184674_184681;chr3L_184778_184854 77.78 83.33 71.43 72.97 53.33 57.14 77.78 82.05 71.43 80.00 66.67 80.56 56.25 80.95 74.07 84.62 70.00 75.00 70.83 72.73 61.11 76.47 96.00 85.71 91.67 84.21 92.86 81.82 82.14 94.44 71.43 75.00 75.00 69.44 92.86 85.00 83.33 89.47 81.25 68.52 71.43 70.00 77.78 87.50 56.52 84.85 94.44 63.89 72.73 92.31 96.77 76.47 76.47 100.00 62.50 86.67 95.24 62.86 K intron_retention CG14614,REI_chrX_21856047_21856229,RI_chrX_21856896_21857109 chrX - chrX_21856896_21857109 chrX_21856895_21856896;chrX_21857109_21857110 chrX_21856796_21856895;chrX_21857110_21857209 100.00 97.67 97.67 100.00 100.00 100.00 100.00 98.25 98.67 100.00 96.97 97.30 100.00 97.50 100.00 100.00 96.88 100.00 100.00 100.00 97.67 94.74 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 98.11 100.00 97.50 100.00 100.00 98.15 100.00 100.00 98.65 96.97 100.00 100.00 97.06 96.97 100.00 98.41 96.00 97.96 100.00 94.12 100.00 100.00 100.00 100.00 100.00 K intron_retention klett chrX - chrX_21499782_21499870 chrX_21499781_21499782;chrX_21499870_21499871 chrX_21499389_21499781;chrX_21499871_21500596 36.60 60.00 33.33 46.15 40.00 46.15 28.57 36.36 43.75 NA NA 29.17 42.86 30.77 30.00 NA 41.67 46.15 36.84 37.50 NA 29.41 46.15 34.78 25.00 30.77 45.00 53.85 33.33 15.79 25.00 NA 26.67 36.84 46.15 47.62 29.41 33.33 35.71 29.55 NA 34.62 41.67 34.78 25.00 44.44 41.67 33.33 44.44 36.84 47.83 NA 63.64 50.00 42.11 35.00 35.71 28.57 K alternative_donor RpL8,I_chr3L_2587513_2587750,I_chr3L_2587600_2587750,RI_chr3L_2587690_2587750,I_chr3L_2589746_2592161 chr3L + chr3L_2587600_2587750;chr3L_2587690_2587750 chr3L_2587514_2587750 chr3L_2587751_2587850;chr3L_2587500_2587513 99.94 99.88 100.00 99.96 100.00 100.00 99.96 99.94 99.97 100.00 99.97 100.00 99.91 99.97 100.00 99.96 100.00 99.97 100.00 99.96 99.97 99.84 99.95 99.97 100.00 100.00 99.94 99.92 99.93 99.92 99.88 99.94 99.92 99.93 99.79 99.90 100.00 100.00 99.96 99.92 99.88 99.97 99.96 99.89 99.97 99.86 99.92 99.90 99.94 99.88 99.87 99.89 99.92 99.69 99.93 99.93 99.92 100.00 K intron_retention cic,RI_chr3R_16122222_16123529 chr3R + chr3R_16122222_16124105 chr3R_16122221_16122222;chr3R_16124105_16124106 chr3R_16122122_16122221;chr3R_16124106_16124254 1.72 0.00 0.00 3.35 0.00 1.22 1.82 2.55 1.83 0.00 1.41 0.95 2.67 2.63 0.76 2.78 2.25 1.61 2.41 0.46 1.02 18.18 1.64 0.81 3.54 5.75 1.05 5.81 3.45 5.49 0.00 0.00 4.72 1.47 2.60 9.02 2.06 1.72 1.68 2.03 4.35 0.93 0.00 2.94 8.57 2.35 2.56 3.60 0.00 0.00 2.34 0.00 0.00 0.00 0.00 0.00 4.44 0.00 K intron_retention CG12576,RI_chrX_21878289_21882347,I_chrX_21882735_21882809,I_chrX_21882735_21883407,I_chrX_21882735_21883467,I_chrX_21882735_21883620,I_chrX_21882735_21883714 chrX - chrX_21882735_21883750 chrX_21882734_21882735;chrX_21883750_21883751 chrX_21882635_21882734;chrX_21883751_21883814 0.00 0.00 0.00 4.55 0.00 0.00 6.94 2.29 0.00 0.00 0.00 0.00 0.00 0.00 3.33 4.35 1.54 0.00 2.78 1.17 0.00 1.08 0.00 0.00 0.00 0.00 1.96 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 2.35 0.00 0.00 0.00 0.00 2.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341925_20342041;chr3L_20341636_20342041;chr3L_20341509_20342041;chr3L_20341865_20342041;chr3L_20341486_20342041;chr3L_20341522_20342041;chr3L_20341751_20342041;chr3L_20341530_20342041;chr3L_20341629_20342041;chr3L_20341759_20342041 chr3L_20341598_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD dwg,RI_chrX_2622297_2622355,RI_chrX_2622297_2622430,RI_chrX_2622435_2622577,RI_chrX_2627170_2627263 chrX + chrX_2622297_2622577 chrX_2622435_2622577 chrX_2622578_2622677;chrX_2622197_2622296 1.55 0.00 2.33 0.00 0.00 5.13 NA 0.00 1.72 0.00 0.00 1.33 0.00 5.00 0.00 2.17 0.00 0.00 2.56 1.19 0.00 NA 1.79 0.00 2.78 3.45 6.12 0.00 4.26 0.00 2.04 2.94 4.26 0.00 3.57 3.85 1.85 0.00 0.00 1.54 0.00 2.99 0.00 0.00 3.92 1.49 2.50 1.56 4.48 10.87 3.64 NA 2.13 0.00 2.70 0.00 2.38 0.00 K cassette CG12581,RI_chr3R_1914_9438,I_chr3R_9380_9438 chr3R + chr3R_1914_9438 chr3R_1914_7783;chr3R_8650_9438 chr3R_7784_8649 chr3R_1814_1913;chr3R_9439_9538 100.00 100.00 97.22 87.88 96.43 100.00 100.00 100.00 98.28 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 96.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 97.67 96.00 100.00 96.55 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 97.22 100.00 100.00 97.62 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 97.67 97.83 K intron_retention CG3209,I_chr2R_19957751_19959513,RI_chr2R_19957766_19960227,I_chr2R_19959163_19959513 chr2R + chr2R_19957766_19959513 chr2R_19957765_19957766;chr2R_19959513_19959514 chr2R_19957666_19957765;chr2R_19959514_19959528 25.81 33.33 23.81 40.00 31.58 25.93 44.44 26.19 28.33 26.67 25.00 25.81 70.00 36.00 27.59 19.51 21.21 7.14 29.03 17.32 23.40 61.54 27.03 22.00 38.46 19.51 35.00 34.78 30.43 35.00 19.15 23.08 22.50 37.50 36.84 21.88 21.74 33.33 30.77 19.23 17.24 22.95 38.10 23.68 10.00 21.21 21.21 24.24 25.00 45.00 35.29 30.00 13.79 25.00 30.00 20.00 17.65 9.09 K intron_retention Rab30,I_chr2L_7032178_7032236 chr2L - chr2L_7032178_7032310 chr2L_7032177_7032178;chr2L_7032310_7032311 chr2L_7032078_7032177;chr2L_7032311_7032336 0.00 0.00 0.00 0.00 NA 0.00 5.26 0.00 4.17 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 0.00 23.53 0.00 NA NA NA NA NA 15.79 6.25 7.14 NA 8.33 6.67 NA 7.69 NA 0.00 NA 3.57 11.11 7.69 NA 0.00 9.09 0.00 NA 0.00 3.85 NA 0.00 NA NA NA NA NA NA 0.00 K intron_retention CG11198 chr2R - chr2R_3862127_3862194 chr2R_3862126_3862127;chr2R_3862194_3862195 chr2R_3861620_3862126;chr2R_3862195_3862329 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 5.19 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 K alternative_donor RpL35,I_chrX_5566913_5567030,I_chrX_5567168_5567220 chrX + chrX_5566913_5567030;chrX_5566909_5567030 chrX_5566556_5567030 chrX_5567031_5567130;chrX_5566554_5566555 12.11 8.95 12.46 11.69 15.72 15.68 8.76 11.56 12.30 13.55 14.88 13.80 11.43 11.29 15.27 7.46 12.53 12.21 10.50 12.09 12.82 13.33 8.26 8.82 10.08 12.63 5.46 20.29 7.70 17.28 8.28 16.75 36.09 10.09 14.61 8.65 12.11 12.13 15.79 43.83 9.55 14.60 10.82 23.23 17.61 8.13 9.74 12.35 11.99 7.53 5.54 10.73 28.94 6.23 12.24 8.46 8.73 17.61 N intron_retention I_chrX_16309561_16309689,hang,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16323441_16323548 chrX_16323440_16323441;chrX_16323548_16323549 chrX_16323093_16323440;chrX_16323549_16323697 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.94 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 K intron_retention Gs1l,I_chr2L_4456517_4456723 chr2L - chr2L_4455739_4455856 chr2L_4455738_4455739;chr2L_4455856_4455857 chr2L_4455221_4455738;chr2L_4455857_4455924 10.53 15.62 21.88 16.36 0.00 16.67 30.00 21.88 13.79 16.67 10.53 18.75 10.53 14.29 8.33 12.50 8.70 0.00 23.08 18.46 20.00 50.00 10.45 12.50 9.09 34.62 8.82 9.26 11.76 15.38 7.59 10.26 9.76 9.68 7.69 9.26 8.33 3.57 7.41 19.05 10.53 5.36 13.64 5.26 12.07 11.11 6.67 18.75 17.39 4.44 3.92 17.86 0.00 3.77 25.00 6.67 5.00 12.12 K jcn_only_AD l(2)37Ce,RI_chr2L_19132432_19132483,I_chr2L_19134277_19143634,RI_chr2L_19145845_19146761 chr2L + chr2L_19132417_19132483 chr2L_19132432_19132483 chr2L_19132484_19132583;chr2L_19132357_19132416 0.00 0.00 0.00 0.00 0.00 0.00 1.31 0.00 0.46 0.00 2.78 0.00 1.39 2.47 0.00 0.00 0.00 0.00 2.67 0.96 1.56 9.09 0.00 0.00 0.00 0.00 0.00 NA 0.00 4.17 2.63 0.00 0.00 0.00 3.85 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 4.76 0.00 0.00 2.08 0.00 0.00 0.00 0.00 4.35 2.78 0.00 1.45 0.00 0.00 0.00 K jcn_only_AA Xpd chr2R + chr2R_17058572_17058625 chr2R_17058572_17058618 chr2R_17058531_17058571;chr2R_17058626_17059083 2.15 NA 4.65 0.00 0.00 0.00 1.89 1.79 2.60 NA 2.13 5.71 9.09 0.00 2.17 0.00 0.00 2.56 2.70 2.22 0.00 0.00 NA NA NA 2.78 NA NA 0.00 9.52 8.51 NA 2.08 0.00 NA 0.00 NA NA 3.57 0.00 NA 3.80 0.00 NA 4.44 9.09 NA 3.03 2.78 NA NA NA NA NA 2.63 NA NA 0.00 K intron_retention Cyp310a1 chr2L - chr2L_18652220_18652280 chr2L_18652219_18652220;chr2L_18652280_18652281 chr2L_18652038_18652219;chr2L_18652281_18652397 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA K intron_retention SF1,I_chr3R_13367524_13367576,I_chr3R_13367524_13367588,I_chr3R_13367524_13367760 chr3R + chr3R_13367524_13368136 chr3R_13367523_13367524;chr3R_13368136_13368137 chr3R_13367424_13367523;chr3R_13368137_13368212 8.57 9.52 11.90 0.00 4.26 6.12 8.57 10.81 9.38 16.67 16.13 11.39 20.00 14.00 7.81 20.00 11.63 9.30 11.54 12.36 5.71 8.33 8.33 13.24 11.54 0.00 8.54 14.29 1.64 10.34 7.94 5.26 1.92 14.77 13.56 0.00 11.11 9.72 7.81 9.62 1.56 9.43 6.38 5.63 0.00 9.52 7.41 5.10 8.28 7.87 9.17 7.27 6.90 5.36 6.35 8.70 9.52 5.56 K jcn_only_AD tna chr3L + chr3L_10851787_10863140 chr3L_10852155_10863140 chr3L_10863141_10863453;chr3L_10851215_10851786 0.00 NA NA 5.56 NA NA 0.00 3.23 1.96 NA NA 0.00 0.00 NA 0.00 3.03 0.00 NA 12.50 5.56 NA 0.00 0.00 0.00 NA NA NA NA NA NA NA NA NA 2.63 NA NA 0.00 0.00 NA NA NA 2.78 NA 19.05 NA NA NA NA 0.00 0.00 0.00 NA NA NA 0.00 NA NA NA N jcn_only_AD CG17760 chr2R + chr2R_8513731_8514257;chr2R_8513642_8514257 chr2R_8513482_8514257 chr2R_8514258_8514421;chr2R_8513465_8513481 0.00 NA NA 19.51 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA N alternative_acceptor CG34140,CG34140_Mkp,noncoding_9561 chr3L - chr3L_184068_184131 chr3L_184073_184131 chr3L_184132_184197;chr3L_184008_184067 66.67 62.50 100.00 67.57 59.09 100.00 100.00 75.86 69.39 100.00 58.33 62.75 62.96 52.38 68.97 68.18 63.16 100.00 100.00 69.39 61.11 66.67 65.31 69.05 67.86 60.61 61.54 64.10 72.00 100.00 60.53 100.00 100.00 100.00 69.57 62.16 61.90 67.65 65.85 62.50 46.15 65.91 100.00 74.07 100.00 56.00 64.29 100.00 66.67 62.50 71.11 60.00 57.69 50.00 62.50 63.33 64.71 100.00 K intron_retention CaMKII,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,I_chr4_1071489_1071884,RI_chr4_1071489_1071968,I_chr4_1071569_1071884,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1071675_1071884 chr4_1071674_1071675;chr4_1071884_1071885 chr4_1071575_1071674;chr4_1071885_1071899 100.00 100.00 100.00 100.00 NA 100.00 96.67 96.77 97.06 NA NA 100.00 94.12 94.12 100.00 96.88 100.00 100.00 100.00 100.00 100.00 NA 100.00 88.89 100.00 100.00 100.00 NA NA NA 100.00 NA NA 100.00 100.00 NA NA NA NA 90.00 NA 100.00 93.75 NA NA NA NA 100.00 96.97 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 K jcn_only_AA RpL8,I_chr3L_2587513_2587750,I_chr3L_2587600_2587750,I_chr3L_2589746_2592161 chr3L + chr3L_2587514_2587717;chr3L_2587514_2587750 chr3L_2587514_2587575 chr3L_2587500_2587513;chr3L_2587751_2587850 0.09 0.08 0.16 0.04 0.04 0.02 0.16 0.12 0.09 0.11 0.02 0.09 0.27 0.12 0.02 0.11 0.08 0.12 0.08 0.06 0.07 0.42 0.07 0.11 0.10 0.14 0.02 0.08 0.19 0.16 0.33 0.23 0.25 0.14 0.00 0.00 0.11 0.06 0.02 0.07 0.22 0.09 0.08 0.08 0.10 0.24 0.12 0.14 0.22 0.08 0.09 0.08 0.09 0.22 0.05 0.05 0.04 0.27 K jcn_only_AD CG15365,I_chrX_8950375_8950458 chrX - chrX_8950375_8950479 chrX_8950375_8950458 chrX_8950275_8950374;chrX_8950480_8950558 21.37 NA NA NA NA NA NA 36.36 15.38 NA NA 20.00 NA NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 19.05 NA NA NA NA NA 22.73 NA NA NA NA NA NA NA NA NA NA K alternative_acceptor RpS11,snoRNA:Me28S-C3420a,I_chr2R_8087545_8087698,I_chr2R_8087747_8088193 chr2R - chr2R_8087093_8087338 chr2R_8087095_8087338 chr2R_8087339_8087544;chr2R_8086818_8087092 99.95 99.96 99.93 99.92 100.00 99.93 99.89 99.93 99.95 100.00 99.90 99.95 99.93 99.97 99.95 99.89 99.97 99.94 99.96 99.95 99.96 100.00 99.92 99.94 99.84 99.96 99.93 100.00 99.96 99.97 99.93 99.94 99.97 99.96 99.92 99.89 99.98 99.92 99.89 99.93 99.94 99.98 99.92 99.93 99.98 99.90 99.96 100.00 99.93 99.93 99.91 100.00 99.95 99.99 99.98 99.97 99.91 99.95 K alternative_acceptor CG5367 chr2L - chr2L_10355223_10355481 chr2L_10355227_10355481 chr2L_10355482_10355868;chr2L_10355066_10355222 100.00 100.00 100.00 100.00 100.00 95.45 100.00 96.88 96.88 100.00 100.00 97.62 100.00 100.00 100.00 97.44 100.00 100.00 95.65 92.31 100.00 100.00 100.00 100.00 100.00 95.00 96.15 100.00 97.06 100.00 96.15 96.67 100.00 100.00 100.00 100.00 93.33 NA 94.74 91.89 97.22 97.56 94.44 100.00 100.00 97.73 100.00 98.18 97.92 94.74 100.00 100.00 95.00 93.33 100.00 100.00 100.00 98.88 K alternative_acceptor bip2,RI_chr4_481674_482028,RI_chr4_481674_487126,RI_chr4_483144_483680,RI_chr4_486609_487126 chr4 - chr4_481478_482130 chr4_481674_482130 chr4_482131_482954;chr4_481340_481477 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 97.73 100.00 100.00 94.74 100.00 100.00 92.86 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 97.56 96.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG3680,Pka-R1 chr3L + chr3L_20804551_20804623 chr3L_20804550_20804551;chr3L_20804623_20804624 chr3L_20804081_20804550;chr3L_20804624_20805297 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 2.56 0.00 0.00 9.52 8.20 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Caki,I_chr3R_17645303_17645375 chr3R - chr3R_17644846_17645375 chr3R_17644845_17644846;chr3R_17645375_17645376 chr3R_17644740_17644845;chr3R_17645376_17645475 9.62 6.49 11.34 0.00 14.93 9.38 9.02 9.93 9.64 15.15 5.06 11.92 14.93 12.50 8.16 21.55 7.89 5.43 12.22 5.11 6.85 26.03 5.26 9.09 4.62 6.49 4.44 8.33 25.86 5.41 9.30 18.18 15.56 11.11 9.80 9.38 6.40 8.00 6.12 21.57 0.00 10.84 11.67 12.09 6.82 11.86 11.11 16.67 9.33 13.73 11.83 11.36 9.52 4.44 12.12 9.62 8.96 16.22 N jcn_only_AA CG7203,LKR,I_chr2L_7795654_7795717 chr2L - chr2L_7794769_7795509 chr2L_7795446_7795509 chr2L_7795510_7795653;chr2L_7794592_7794768 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CycG,I_chr3R_27425071_27425214,RE_chr3R_27427953_27436598 chr3R - chr3R_27425071_27426110 chr3R_27425070_27425071;chr3R_27426110_27426111 chr3R_27424971_27425070;chr3R_27426111_27426325 0.00 0.00 0.00 0.15 0.00 0.00 0.12 0.14 0.13 0.00 0.00 0.18 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.60 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Cdep,I_chr3R_749200_749265 chr3R + chr3R_749200_749265 chr3R_749200_749253 chr3R_749100_749199;chr3R_749266_749365 100.00 100.00 100.00 97.37 100.00 95.24 100.00 97.73 100.00 100.00 94.12 97.62 100.00 100.00 100.00 98.04 100.00 96.67 92.86 100.00 95.00 95.65 100.00 96.55 95.24 100.00 97.06 100.00 100.00 100.00 96.77 100.00 97.06 100.00 100.00 95.83 100.00 100.00 100.00 97.87 100.00 97.87 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 97.50 100.00 100.00 100.00 96.55 100.00 100.00 100.00 K intron_retention CG8929 chr2R + chr2R_16214899_16214948 chr2R_16214898_16214899;chr2R_16214948_16214949 chr2R_16214792_16214898;chr2R_16214949_16215068 100.00 90.91 100.00 94.44 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 91.67 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K intron_retention sbr,RI_chrX_10731248_10731484 chrX - chrX_10728731_10728913 chrX_10728730_10728731;chrX_10728913_10728914 chrX_10728501_10728730;chrX_10728914_10728950 18.57 21.05 23.68 21.15 7.14 14.29 32.76 18.57 13.04 10.00 19.44 15.79 15.38 17.50 30.00 16.95 14.63 14.29 26.83 19.23 26.09 4.08 11.32 15.56 25.00 21.05 23.26 31.03 13.79 7.41 26.98 22.73 6.25 22.06 28.57 24.24 10.26 15.38 15.38 20.00 20.00 22.22 19.35 11.76 10.71 23.33 17.14 20.69 18.57 20.00 10.42 16.67 14.81 18.52 22.50 26.67 17.07 12.20 K multi_cassette CG11266,RI_chr2L_7033019_7033182,RI_chr2L_7033019_7034180,RI_chr2L_7033019_7034764,I_chr2L_7034274_7034764,I_chr2L_7034274_7035406,RI_chr2L_7034911_7035074,I_chr2L_7051093_7051366 chr2L + chr2L_7033019_7035406 chr2L_7033019_7034198;chr2L_7034274_7034483;chr2L_7034694_7034764;chr2L_7034913_7035406 chr2L_7034199_7034273;chr2L_7034484_7034693;chr2L_7034765_7034912 chr2L_7032919_7033018;chr2L_7035407_7035506 7.47 4.88 11.54 2.38 4.35 10.53 9.09 21.05 11.27 4.44 10.53 15.25 28.00 21.43 10.00 23.08 16.67 6.90 13.64 9.33 10.53 2.90 9.76 6.82 2.22 0.00 5.56 3.33 3.90 5.13 27.27 6.12 2.41 20.00 7.32 NA 3.92 6.25 8.89 7.00 3.61 8.86 21.05 10.81 1.98 6.10 4.65 7.63 17.31 5.56 8.33 8.57 0.00 6.25 23.81 8.11 2.94 5.97 K intron_retention CG1161,I_chr3R_1182079_1182146 chr3R + chr3R_1181959_1182146 chr3R_1181958_1181959;chr3R_1182146_1182147 chr3R_1181906_1181958;chr3R_1182147_1182246 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K alternative_donor Arp14D,RE_chrX_16445264_16446372 chrX - chrX_16443182_16443249;chrX_16443182_16443251 chrX_16443182_16443253 chrX_16442302_16443181;chrX_16443254_16443445 0.78 0.00 1.41 0.99 0.00 3.28 1.09 0.00 2.74 0.00 5.56 0.88 0.00 0.00 1.39 0.00 1.72 1.33 1.49 0.00 1.89 1.96 2.78 2.56 NA 1.49 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 2.86 4.17 0.00 0.78 1.12 0.79 0.00 NA 1.19 0.00 7.50 0.00 0.74 0.00 2.63 0.00 0.00 0.00 1.15 0.00 2.44 1.39 K intron_retention I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17181974_17182126,RI_chr3R_17182422_17182532,RI_chr3R_17183087_17183245,RI_chr3R_17183087_17183726,I_chr3R_17183481_17200781,I_chr3R_17183927_17184513,I_chr3R_17183927_17185306,RI_chr3R_17184319_17184513,I_chr3R_17184319_17185084,I_chr3R_17184319_17185284,noncoding_18168,RI_chr3R_17184792_17185306,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,RI_chr3R_17189607_17189988,I_chr3R_17190098_17190207,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17181974_17200781 chr3R_17181973_17181974;chr3R_17200781_17200782 chr3R_17181929_17181973;chr3R_17200782_17200881 14.29 NA NA NA NA NA NA 21.43 10.53 NA NA 11.11 NA 15.38 NA NA NA NA NA 3.85 NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 14.29 14.29 22.22 NA NA NA 6.67 NA 11.76 26.32 NA 14.29 NA NA NA NA NA NA 0.00 K intron_retention CG14438 chrX + chrX_6661156_6661216 chrX_6661155_6661156;chrX_6661216_6661217 chrX_6656169_6661155;chrX_6661217_6662371 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor cul-2,RI_chr2L_21657668_21657832,noncoding_4226,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21656588_21658556 chr2L_21656588_21657832 chr2L_21656493_21656587;chr2L_21658557_21658854 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.57 100.00 100.00 98.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention sec71 chr2L + chr2L_13794629_13794895 chr2L_13794628_13794629;chr2L_13794895_13794896 chr2L_13793535_13794628;chr2L_13794896_13798821 0.00 0.00 0.00 10.64 0.00 0.00 2.13 4.17 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 5.26 NA 2.38 0.00 5.56 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389272_2395659 chrX_2389272_2389644;chrX_2389762_2392054;chrX_2392149_2392515;chrX_2392665_2393243;chrX_2393712_2395659 chrX_2389645_2389761;chrX_2392055_2392148;chrX_2392516_2392664;chrX_2393244_2393711 chrX_2389172_2389271;chrX_2395660_2395759 26.66 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG10353,I_chrX_11775936_11778830,RI_chrX_11780885_11780988 chrX - chrX_11779138_11780988;chrX_11779315_11780988 chrX_11780885_11780988 chrX_11780989_11781085;chrX_11778831_11779137 75.00 100.00 50.00 100.00 NA NA 50.00 100.00 75.00 100.00 50.00 100.00 NA NA 50.00 25.00 NA 100.00 100.00 33.33 NA 66.67 100.00 50.00 50.00 NA NA 100.00 50.00 50.00 100.00 100.00 66.67 100.00 NA 100.00 100.00 NA 50.00 100.00 100.00 100.00 50.00 100.00 50.00 50.00 50.00 75.00 40.00 100.00 50.00 50.00 NA NA 100.00 100.00 50.00 66.67 K intron_retention CG5850,I_chr2L_9963013_9963451 chr2L - chr2L_9961615_9961728 chr2L_9961614_9961615;chr2L_9961728_9961729 chr2L_9961359_9961614;chr2L_9961729_9961775 29.41 33.33 16.22 39.58 40.00 41.67 24.24 45.00 29.79 38.46 25.00 20.00 17.65 34.62 29.17 37.04 26.67 28.00 31.82 19.72 23.08 65.69 43.18 37.14 25.00 37.50 39.39 39.39 36.00 28.57 19.35 26.47 26.87 33.33 37.50 21.05 34.43 26.47 46.15 29.55 27.27 26.79 29.41 40.00 18.00 24.32 35.48 26.67 20.00 22.73 37.84 34.78 19.35 29.03 36.36 35.00 26.47 23.68 K intron_retention CG16734,F_chr3R_5081035_5081083 chr3R + chr3R_5081032_5081083 chr3R_5081031_5081032;chr3R_5081083_5081084 chr3R_5080935_5081031;chr3R_5081084_5081183 5.50 NA NA 7.14 NA NA 6.25 4.76 18.18 NA NA 0.00 NA NA NA 12.50 0.00 NA NA 0.00 NA NA NA NA NA NA 7.69 NA NA NA 0.00 NA NA 10.53 NA NA NA NA NA 0.00 NA 4.17 NA NA NA 25.00 NA NA 21.05 NA NA NA NA NA NA 0.00 NA NA K jcn_only_AA RI_chr3L_19994894_19994949,CG7668,RI_chr3L_19995983_19996407 chr3L + chr3L_19996093_19996407 chr3L_19996093_19996402 chr3L_19995858_19996092;chr3L_19996408_19996507 84.95 84.62 79.55 80.60 85.42 84.62 79.38 85.06 84.56 88.46 89.47 88.37 76.19 76.00 91.38 80.00 78.38 87.10 87.10 83.08 93.33 91.67 83.58 90.91 85.19 88.68 86.27 89.47 89.29 94.00 78.38 96.30 88.10 82.35 90.32 87.88 85.37 78.79 79.41 90.00 84.85 87.18 73.68 83.93 86.21 84.62 86.49 78.05 83.10 88.89 94.23 80.70 NA 76.92 82.14 83.67 84.78 81.82 K jcn_only_AA cdi chr3R - chr3R_14875792_14875867 chr3R_14875795_14875867 chr3R_14875868_14875953;chr3R_14875539_14875791 66.55 61.29 75.00 67.31 80.77 64.86 65.00 62.26 64.38 65.00 NA 73.47 68.97 NA 67.57 77.14 56.00 NA 64.00 77.19 79.17 72.92 76.92 64.10 65.79 61.90 68.97 60.61 67.86 72.73 71.43 NA 60.00 76.47 57.58 75.00 69.39 50.00 61.76 56.82 NA 57.41 79.17 69.23 NA 52.38 47.62 NA 74.24 NA 72.46 58.33 NA NA 77.14 60.00 54.55 NA K cassette MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17389985_17398371;chr2R_17395228_17398371 chr2R_17395228_17397610,chr2R_17389985_17397610;chr2R_17397707_17398371 chr2R_17397611_17397706 chr2R_17389891_17389984;chr2R_17398372_17398565 96.77 94.74 96.77 100.00 93.10 96.67 100.00 100.00 94.03 95.83 100.00 100.00 100.00 100.00 100.00 96.77 100.00 97.14 95.83 96.77 95.83 92.96 98.15 90.91 97.06 95.65 97.73 97.78 82.50 96.67 100.00 95.24 96.30 97.67 95.83 82.93 94.12 89.80 95.52 94.34 94.44 98.18 94.44 97.22 88.89 96.77 100.00 95.24 100.00 100.00 100.00 95.00 96.00 97.22 100.00 96.77 97.78 100.00 K jcn_only_AD Ntf-2,I_chrX_20906749_20909772 chrX + chrX_20907492_20907565 chrX_20907498_20907565 chrX_20907566_20907664;chrX_20907429_20907491 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.84 100.00 100.00 99.76 99.61 100.00 99.67 100.00 99.60 100.00 100.00 100.00 100.00 100.00 99.74 100.00 100.00 99.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.70 100.00 99.72 100.00 100.00 100.00 100.00 100.00 99.78 100.00 99.63 99.81 100.00 99.72 100.00 99.10 100.00 100.00 99.78 100.00 99.69 K intron_retention cmet chr2L - chr2L_11267047_11267150 chr2L_11267046_11267047;chr2L_11267150_11267151 chr2L_11266982_11267046;chr2L_11267151_11268052 13.39 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N intron_retention foi,I_chr3L_8524905_8524976 chr3L + chr3L_8523587_8523659 chr3L_8523586_8523587;chr3L_8523659_8523660 chr3L_8523525_8523586;chr3L_8523660_8524249 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA 29.41 100.00 100.00 NA 63.16 NA NA NA NA 100.00 NA 59.62 100.00 100.00 NA 41.67 100.00 100.00 52.63 NA NA NA 100.00 100.00 100.00 NA NA NA NA NA 65.22 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 K mutually_exclusive B4,REI_chr2L_13509793_13534906,EI_chr2L_13513471_13534906,I_chr2L_13513474_13549131,CG15638,CG9263,I_chr2L_13547133_13549131,I_chr2L_13547162_13547692,I_chr2L_13547304_13549131 chr2L - chr2L_13509793_13534906,chr2L_13535027_13549131 chr2L_13509793_13512959,chr2L_13513474_13549131 chr2L_13534907_13535026 chr2L_13512960_13513473 chr2L_13509741_13509792;chr2L_13549132_13549231 90.67 88.89 86.36 69.23 83.33 91.18 94.12 60.87 93.42 97.18 96.00 90.00 81.25 87.50 89.47 89.74 84.62 100.00 80.00 91.11 96.67 96.90 95.06 91.49 90.00 82.61 89.29 91.18 94.29 98.00 96.77 94.74 99.61 89.36 93.75 87.50 88.89 95.45 90.62 85.71 97.87 82.35 94.44 83.33 96.72 90.00 94.03 98.43 90.74 92.11 82.61 76.47 89.29 97.67 90.00 84.62 90.67 97.83 K alternative_donor CG16936,RI_chr2R_20655101_20655166,I_chr2R_20660319_20660496 chr2R - chr2R_20655101_20655161;chr2R_20655101_20655620;chr2R_20655101_20655476 chr2R_20655101_20655166 chr2R_20655001_20655100;chr2R_20655621_20655665 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.81 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 3.70 3.45 0.00 0.00 1.61 0.00 2.22 8.33 0.00 0.00 1.37 0.00 0.00 0.73 0.00 0.98 1.20 2.13 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.99 K alternative_last_exon CrebB-17A,I_chrX_18261213_18269281,I_chrX_18265640_18266060,I_chrX_18265982_18266063 chrX + chrX_18266466_18269875 chrX_18266466_18267066 chrX_18269876_18271387 chrX_18267067_18267488 chrX_18266156_18266465 98.70 98.70 98.21 98.31 97.50 98.15 98.08 98.44 99.23 98.36 100.00 99.07 96.88 97.50 98.31 97.78 97.06 97.62 97.37 99.34 97.44 99.19 99.16 98.96 98.51 97.50 98.75 98.78 98.86 98.86 97.92 98.31 99.14 98.77 98.57 100.00 99.38 100.00 100.00 99.17 98.04 99.18 97.37 98.53 99.04 98.88 98.65 99.06 99.11 98.57 98.90 97.92 98.70 100.00 98.04 100.00 98.75 98.95 K alternative_acceptor Utx chr2L - chr2L_10274091_10274164 chr2L_10274106_10274164 chr2L_10274165_10274868;chr2L_10273966_10274090 41.38 42.86 35.29 46.43 63.64 50.00 39.29 45.71 46.15 NA 46.67 45.45 35.71 38.89 36.84 41.38 31.25 47.06 47.83 37.14 42.86 NA 25.93 48.00 35.71 26.32 55.00 NA 36.36 36.36 47.62 NA NA 41.46 50.00 75.00 36.36 NA 35.71 57.14 40.00 39.47 35.00 46.67 NA 35.71 50.00 25.00 44.44 25.81 50.00 35.71 NA NA 36.36 46.15 29.41 NA K jcn_only_AA shep,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5155644_5156066;chr3L_5155732_5156066 chr3L_5155711_5156066 chr3L_5156067_5156229;chr3L_5155556_5155643 94.94 95.65 95.04 86.76 93.33 94.32 93.92 95.10 93.75 94.67 96.23 95.25 91.08 95.02 95.49 94.94 93.50 94.50 93.54 94.58 95.43 95.70 93.04 92.22 92.61 91.81 97.31 97.87 93.64 93.57 95.14 94.38 95.60 92.20 94.89 91.78 94.30 96.00 96.65 96.51 91.93 95.41 96.08 97.67 95.08 95.78 96.00 95.08 94.75 92.04 92.98 95.35 95.56 98.15 95.24 94.41 92.00 96.53 K intron_retention CG4774 chr3R - chr3R_21511223_21511288 chr3R_21511222_21511223;chr3R_21511288_21511289 chr3R_21510956_21511222;chr3R_21511289_21511424 0.00 0.00 2.94 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD kst,I_chr3L_3367008_3367514 chr3L + chr3L_3367216_3367514;chr3L_3366963_3367514;chr3L_3367008_3367514;chr3L_3366774_3367514 chr3L_3367011_3367514 chr3L_3367515_3367614 40.69 45.70 39.24 35.39 30.51 23.13 55.11 56.70 43.70 40.43 30.20 44.36 48.10 51.74 35.57 52.27 37.78 61.03 39.13 34.30 35.06 54.24 38.99 45.82 52.20 63.50 47.91 54.17 45.32 44.03 38.25 40.22 47.67 38.68 37.20 41.18 50.53 46.63 40.69 5.42 36.46 43.47 39.92 54.34 51.34 33.42 34.65 32.50 40.00 35.69 39.80 45.10 40.33 41.50 44.23 40.27 47.30 38.28 K alternative_acceptor CG11148,F_chr4_876482_880932,I_chr4_880982_881065,I_chr4_882005_882418,RI_chr4_886921_887162 chr4 - chr4_880982_881065 chr4_881008_881065 chr4_881066_881165;chr4_880961_880981 98.46 96.00 100.00 98.46 100.00 100.00 98.21 98.53 97.59 100.00 100.00 98.36 100.00 100.00 97.37 100.00 100.00 96.97 97.78 97.26 100.00 100.00 96.97 100.00 100.00 100.00 96.97 100.00 95.65 100.00 95.74 96.43 95.65 97.18 94.44 94.74 96.30 96.15 96.55 100.00 100.00 98.67 100.00 100.00 100.00 97.06 100.00 100.00 98.63 98.08 100.00 96.30 100.00 96.55 97.73 93.94 98.28 98.08 K intron_retention Ac3,I_chr2L_21635211_21637957,I_chr2L_21643253_21646594 chr2L + chr2L_21635036_21635091 chr2L_21635035_21635036;chr2L_21635091_21635092 chr2L_21634995_21635035;chr2L_21635092_21635210 48.53 NA NA NA NA NA 76.92 NA 47.06 NA NA NA NA NA NA 45.45 NA NA NA 38.46 NA 60.00 57.14 NA 54.55 NA 66.67 NA 86.67 NA 28.57 NA NA 36.36 NA NA 26.67 46.15 NA 17.65 NA 30.77 NA 70.59 NA 20.00 NA 60.00 53.33 NA NA 50.00 NA NA NA NA NA NA K intron_retention CG14614,REI_chrX_21856047_21856229,RI_chrX_21856896_21857109 chrX - chrX_21855265_21855326 chrX_21855264_21855265;chrX_21855326_21855327 chrX_21853919_21855264;chrX_21855327_21855508 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Hsc70-5 chr2R - chr2R_10140998_10141057 chr2R_10140997_10140998;chr2R_10141057_10141058 chr2R_10140857_10140997;chr2R_10141058_10142162 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.50 0.74 0.66 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9328 chr2L + chr2L_20813358_20813432 chr2L_20813357_20813358;chr2L_20813432_20813433 chr2L_20813156_20813357;chr2L_20813433_20814050 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.36 0.00 0.00 0.41 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 1.51 0.00 0.00 0.00 K jcn_only_AD CG1646,I_chr3R_24640561_24640869,I_chr3R_24641816_24641874 chr3R + chr3R_24639729_24640869 chr3R_24640561_24640869 chr3R_24640870_24640969;chr3R_24639603_24639728 0.62 0.00 0.00 0.00 0.00 0.00 0.62 0.53 0.29 3.70 0.00 0.33 1.06 0.00 0.00 0.00 0.00 0.74 0.00 0.32 0.00 2.27 1.75 0.83 4.11 1.10 3.14 1.46 1.73 1.09 0.00 0.78 0.53 0.50 0.75 6.67 2.54 0.44 1.59 1.61 0.89 0.00 0.00 1.95 0.00 1.76 0.49 0.00 0.00 2.35 1.52 2.00 0.74 0.83 0.61 1.06 1.06 0.00 K intron_retention CG13567,I_chr2R_19932706_19933121 chr2R - chr2R_19924438_19924497 chr2R_19924437_19924438;chr2R_19924497_19924498 chr2R_19924206_19924437;chr2R_19924498_19924663 0.00 0.00 NA 5.41 NA NA 8.00 0.00 0.00 NA 0.00 6.25 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 6.45 NA NA 0.00 0.00 NA NA 7.41 0.00 NA 0.00 NA 0.00 0.00 NA 3.85 NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 3.23 NA K mutually_exclusive CRMP,I_chr3R_1401648_1403314 chr3R + chr3R_1401648_1402757,chr3R_1402982_1403314 chr3R_1401648_1401896,chr3R_1402136_1403314 chr3R_1402758_1402981 chr3R_1401897_1402135 chr3R_1401548_1401647;chr3R_1403315_1403414 20.00 16.67 40.00 5.88 NA NA 20.00 16.67 16.67 61.54 NA NA 25.00 NA NA NA 20.00 NA NA 10.00 NA 16.67 46.15 12.50 40.00 20.00 12.50 NA NA 16.67 33.33 25.00 25.00 NA 16.67 40.00 16.67 16.67 28.57 14.29 33.33 16.67 NA NA 12.50 28.57 NA 20.00 11.11 11.11 25.00 37.50 16.67 25.00 40.00 22.22 25.00 NA N intron_retention Trc8 chr3R - chr3R_25325222_25326440 chr3R_25325221_25325222;chr3R_25326440_25326441 chr3R_25325094_25325221;chr3R_25326441_25326615 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 77.27 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor vsg,I_chr3L_9707724_9708265 chr3L + chr3L_9707496_9707605 chr3L_9707500_9707605 chr3L_9707606_9707723;chr3L_9707406_9707495 93.00 93.27 93.64 94.59 91.49 93.71 94.35 92.44 94.08 92.16 94.57 92.14 93.84 89.94 90.87 93.52 92.73 94.57 92.61 92.04 95.20 92.92 91.25 93.55 92.75 90.37 95.24 92.45 90.79 92.16 93.81 91.23 91.45 93.68 90.00 90.38 94.62 96.49 94.81 90.91 92.66 92.58 92.06 95.18 93.26 92.47 93.55 89.33 94.39 95.51 93.33 96.77 91.67 96.88 91.19 93.00 95.35 93.97 K intron_retention Lasp,I_chr3L_16671761_16673911,R_chr3L_16672970_16673911,RI_chr3L_16674471_16704042 chr3L - chr3L_16673033_16673911 chr3L_16673032_16673033;chr3L_16673911_16673912 chr3L_16671908_16673032;chr3L_16673912_16674011 1.37 0.93 0.95 1.32 1.05 2.91 3.56 2.24 2.01 0.00 1.44 2.19 1.62 2.40 1.47 2.15 2.45 1.64 1.90 1.61 2.22 1.59 1.19 1.87 1.30 1.86 1.46 2.10 0.73 0.85 1.12 0.00 0.20 1.14 0.80 0.68 0.87 1.48 0.48 1.16 0.29 1.98 0.00 0.44 0.00 0.57 1.62 0.23 1.69 1.43 1.37 0.00 0.00 2.38 1.47 1.04 1.67 0.16 K intron_retention Fmr1,I_chr3R_5934794_5935245,I_chr3R_5934801_5935537 chr3R - chr3R_5929325_5929394 chr3R_5929324_5929325;chr3R_5929394_5929395 chr3R_5927298_5929324;chr3R_5929395_5929469 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention isopeptidase-T-3 chr2R + chr2R_15559747_15559798 chr2R_15559746_15559747;chr2R_15559798_15559799 chr2R_15559411_15559746;chr2R_15559799_15560102 17.45 19.05 20.00 24.24 14.29 NA 33.33 23.33 27.27 NA NA 16.13 33.33 NA NA 26.32 NA 14.29 19.05 11.43 0.00 0.00 0.00 NA 14.29 16.67 21.43 38.46 11.76 6.25 13.79 33.33 3.77 33.33 17.39 13.33 6.25 14.29 6.25 15.38 16.67 24.14 NA 18.18 16.00 17.50 29.41 25.00 29.17 30.77 11.11 NA NA 18.75 13.04 20.00 NA 17.65 K alternative_donor bowl,RI_chr2L_3772695_3773616 chr2L + chr2L_3771785_3772460;chr2L_3771755_3772460 chr2L_3771874_3772460 chr2L_3772461_3772694;chr2L_3771707_3771754 18.18 NA 20.00 22.22 NA NA 27.27 22.22 11.11 NA NA NA NA 14.29 NA 14.29 NA NA NA 18.18 NA 25.00 12.50 NA 40.00 NA NA 42.86 NA 14.29 NA NA 16.67 18.18 NA NA 33.33 NA NA 30.00 NA 12.50 NA NA NA NA NA NA 18.18 NA NA NA NA NA 16.67 NA NA 14.29 K cassette PMCA,I_chr4_371836_372509,I_chr4_373671_374568,I_chr4_376108_379519 chr4 - chr4_371836_372509 chr4_371836_372211;chr4_372454_372509 chr4_372212_372453 chr4_371736_371835;chr4_372510_372609 100.00 100.00 98.68 95.65 100.00 100.00 99.43 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 99.38 98.92 98.39 100.00 99.24 100.00 98.21 100.00 100.00 97.50 98.00 98.68 96.00 100.00 100.00 99.14 100.00 100.00 100.00 100.00 94.74 97.73 100.00 100.00 100.00 100.00 100.00 100.00 98.82 100.00 100.00 100.00 100.00 97.80 96.88 100.00 100.00 100.00 100.00 100.00 96.30 96.77 100.00 K cassette Nop60B,RI_chr2R_20063248_20063455,I_chr2R_20063248_20063949,F_chr2R_20073291_20073744 chr2R + chr2R_20063248_20063949 chr2R_20063248_20063455;chr2R_20063715_20063949 chr2R_20063456_20063714 chr2R_20063148_20063247;chr2R_20063950_20064049 100.00 100.00 100.00 98.87 100.00 100.00 99.69 99.72 99.69 100.00 99.57 100.00 100.00 100.00 99.67 100.00 100.00 99.62 99.59 99.58 100.00 99.77 99.84 99.82 100.00 100.00 100.00 100.00 100.00 100.00 99.62 100.00 99.72 100.00 100.00 99.68 100.00 99.82 99.86 100.00 99.57 100.00 99.50 99.73 99.71 100.00 100.00 99.58 99.83 99.81 100.00 99.65 99.86 100.00 100.00 100.00 100.00 99.68 K jcn_only_AD RpL15 chr3LHet + chr3LHet_2397859_2398127;chr3LHet_2397925_2398127;chr3LHet_2397992_2398127;chr3LHet_2398060_2398127;chr3LHet_2397841_2398127;chr3LHet_2398002_2398127;chr3LHet_2397820_2398127;chr3LHet_2398053_2398127 chr3LHet_2398018_2398127 chr3LHet_2398128_2398454;chr3LHet_2397802_2397819 2.08 10.81 1.39 0.54 6.25 4.35 7.69 0.81 4.23 3.12 2.86 1.75 2.38 9.38 1.54 3.92 0.00 5.45 0.74 1.11 2.56 0.00 14.29 4.35 22.73 4.26 18.52 1.29 3.29 1.79 0.00 0.93 0.00 1.43 0.00 5.81 8.00 NA 17.39 0.00 1.10 1.48 0.00 0.16 1.04 0.95 4.55 0.32 1.22 22.22 7.69 13.04 0.24 8.70 1.71 6.25 7.14 0.12 K alternative_acceptor mthl10 chr3L - chr3L_335170_335244 chr3L_335200_335244 chr3L_335245_335300;chr3L_335101_335169 1.81 3.45 1.59 1.79 0.00 1.54 2.56 4.31 4.35 6.25 0.00 3.88 3.92 2.17 1.67 1.64 2.70 3.70 1.82 2.02 0.00 0.00 0.00 NA NA 5.00 6.25 NA 0.00 0.00 2.15 0.00 0.00 4.12 3.85 0.00 0.00 0.00 6.90 2.38 0.00 3.16 2.27 6.98 2.04 0.00 0.00 1.09 0.91 NA 4.76 0.00 NA 5.00 3.17 0.00 0.00 1.54 K intron_retention CG7324,I_chr3L_21335553_21335702,I_chr3L_21340055_21342206 chr3L - chr3L_21335237_21335293 chr3L_21335236_21335237;chr3L_21335293_21335294 chr3L_21334675_21335236;chr3L_21335294_21335552 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K intron_retention CG1598 chr2R - chr2R_3426920_3426982 chr2R_3426919_3426920;chr2R_3426982_3426983 chr2R_3426824_3426919;chr2R_3426983_3427133 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 1.92 0.00 0.00 0.00 0.00 0.00 1.57 0.00 2.63 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG5706,I_chr3R_20078025_20078083 chr3R - chr3R_20078025_20078087 chr3R_20078025_20078083 chr3R_20077925_20078024;chr3R_20078088_20078118 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 1.82 0.00 0.00 1.64 1.37 0.00 0.00 0.00 2.22 0.00 0.00 1.23 0.00 2.22 0.00 0.00 1.45 0.00 0.00 0.00 0.00 1.45 0.00 0.00 K intron_retention Keap1 chr3R - chr3R_12901109_12901224 chr3R_12901108_12901109;chr3R_12901224_12901225 chr3R_12900903_12901108;chr3R_12901225_12901907 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 NA 2.94 0.00 0.00 0.00 NA 0.00 6.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chrX_7172561_7252693,CG1677,I_chrX_7178792_7252693,unc-119,RI_chrX_7183298_7184274 chrX - chrX_7183712_7183777 chrX_7183711_7183712;chrX_7183777_7183778 chrX_7183539_7183711;chrX_7183778_7184428 0.00 0.00 0.00 5.56 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 4.35 0.00 NA 0.00 4.76 NA 0.00 0.00 6.45 0.00 0.00 0.00 5.88 NA NA NA NA NA 0.00 10.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA NA 0.00 0.00 NA K alternative_last_exon RI_chr3R_5165997_5180143,CG33936,noncoding_15544,I_chr3R_5167726_5180143,RI_chr3R_5183458_5183705 chr3R + chr3R_5167726_5180143 chr3R_5167726_5167941 chr3R_5180144_5180805 chr3R_5167942_5168213 chr3R_5167626_5167725 91.94 92.59 89.19 95.33 90.00 93.75 97.17 98.91 97.47 90.00 95.12 98.35 96.92 97.64 90.00 98.50 95.38 95.00 95.56 94.32 80.00 71.43 92.96 91.43 87.10 95.89 80.00 56.52 91.67 93.62 88.61 71.43 70.27 97.35 91.94 93.62 44.44 68.75 55.56 91.82 86.76 91.11 97.83 92.59 79.17 95.95 86.96 95.24 98.18 85.29 93.59 94.74 85.00 72.00 94.52 82.14 66.67 91.67 K intron_retention CG3907,I_chr2R_19907866_19907906,I_chr2R_19909065_19909249,I_chr2R_19909692_19909755 chr2R - chr2R_19907845_19907906 chr2R_19907844_19907845;chr2R_19907906_19907907 chr2R_19907766_19907844;chr2R_19907907_19908006 1.04 1.12 3.33 2.98 0.00 1.32 0.71 0.52 1.04 0.00 1.32 1.32 0.00 2.22 0.00 2.94 1.23 0.00 0.00 1.27 2.27 0.00 2.44 2.35 3.85 3.81 3.92 2.70 4.00 0.00 1.61 0.00 3.33 1.91 0.00 0.00 0.00 0.00 0.00 0.88 0.00 1.42 1.33 0.00 0.00 0.00 0.00 0.00 2.17 1.92 0.95 1.47 0.00 0.00 1.80 0.00 0.00 1.61 K intron_retention glo,I_chr3R_7643675_7643727,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7643061_7643727 chr3R_7643060_7643061;chr3R_7643727_7643728 chr3R_7642916_7643060;chr3R_7643728_7643827 3.57 4.81 3.41 12.70 2.33 2.44 7.32 8.18 7.58 3.57 2.60 5.59 5.26 5.45 2.68 4.73 5.06 0.00 4.08 5.63 2.99 2.36 3.08 3.57 3.70 1.77 5.71 3.61 3.03 3.26 0.00 4.82 6.67 4.88 5.68 9.33 4.59 3.33 3.17 5.81 2.35 3.28 6.02 2.70 5.56 3.38 2.63 5.84 4.33 2.88 4.44 2.90 2.53 2.38 3.10 2.04 1.75 4.83 K alternative_donor Slh,CR_chr2L_2491440_2491508 chr2L - chr2L_2491443_2491518 chr2L_2491443_2491512 chr2L_2490733_2491442;chr2L_2491519_2491608 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG6805 chr2R + chr2R_12894564_12894637 chr2R_12894563_12894564;chr2R_12894637_12894638 chr2R_12894294_12894563;chr2R_12894638_12895109 80.00 77.97 82.61 84.42 80.00 73.02 87.01 84.21 76.97 63.16 72.22 85.16 53.85 84.91 78.87 87.10 85.00 87.10 82.81 84.57 64.56 56.67 80.28 79.71 84.09 87.32 79.41 78.95 78.38 77.78 87.27 80.43 82.35 82.11 69.57 85.48 73.85 80.00 75.95 76.47 80.00 79.82 83.02 71.43 77.55 86.59 75.71 91.89 85.00 68.75 78.08 70.00 83.87 80.00 82.02 74.60 79.55 82.05 K jcn_only_AA CG1407,RI_chr2R_5918919_5919093,I_chr2R_5918925_5919213,RI_chr2R_5918952_5919084,RI_chr2R_5918952_5919093 chr2R - chr2R_5918925_5919093 chr2R_5918952_5919093 chr2R_5919094_5919184;chr2R_5918852_5918924 75.83 71.43 70.73 58.50 83.91 79.37 74.80 70.16 77.48 80.95 83.33 79.37 89.53 70.13 72.00 73.94 80.00 68.38 78.23 74.77 77.32 86.11 73.96 70.09 77.78 84.91 72.32 87.50 78.79 75.47 71.90 62.50 78.38 75.56 81.63 94.00 79.67 73.20 66.67 79.02 70.00 76.82 79.22 69.00 82.22 61.63 68.48 86.36 75.83 71.29 68.48 77.01 69.57 66.67 81.34 70.00 81.74 84.62 K intron_retention Rab5,I_chr2L_2361586_2364794 chr2L - chr2L_2360570_2360632 chr2L_2360569_2360570;chr2L_2360632_2360633 chr2L_2360460_2360569;chr2L_2360633_2360801 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.21 0.50 0.00 0.00 0.27 0.00 0.00 0.40 0.27 0.00 1.86 0.27 0.28 1.02 3.14 0.55 0.00 4.71 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.44 0.00 0.00 0.00 0.19 0.00 0.28 0.00 0.34 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_244368_244443 chr4_244367_244368;chr4_244443_244444 chr4_244183_244367;chr4_244444_244512 94.12 97.83 91.84 94.81 96.97 97.62 97.26 96.33 94.83 71.43 96.00 95.15 93.85 91.23 98.28 95.18 92.16 92.31 94.59 95.54 97.14 84.09 89.74 92.45 94.12 100.00 98.28 100.00 85.71 91.11 78.26 92.86 96.97 98.00 96.15 70.83 89.66 95.83 90.91 91.67 85.00 99.03 92.98 90.24 92.86 93.48 87.10 94.87 96.92 88.89 92.59 85.71 96.43 94.44 97.14 89.47 93.18 95.65 K jcn_only_AA msps,I_chr3R_11877071_11877796 chr3R + chr3R_11885098_11885185;chr3R_11885098_11885182 chr3R_11885098_11885206 chr3R_11884965_11885097;chr3R_11885207_11885406 40.00 28.57 NA 40.00 NA NA 34.38 50.00 56.82 23.81 NA 36.36 NA NA 42.86 38.10 NA NA NA 50.00 39.13 34.21 37.68 33.33 28.00 NA 51.61 NA 40.00 50.00 NA NA 45.00 61.54 26.92 28.12 41.54 36.59 36.00 41.03 NA 50.00 NA 35.56 63.64 30.00 53.85 45.00 51.61 34.15 28.57 32.26 54.55 48.57 23.81 40.48 50.00 NA K mutually_exclusive CPTI,I_chr2R_6358255_6358734,I_chr2R_6358255_6359122,RI_chr2R_6358779_6358944,I_chr2R_6360956_6365128 chr2R - chr2R_6358255_6358944,chr2R_6359011_6359122 chr2R_6358255_6358718,chr2R_6358779_6359122 chr2R_6358945_6359010 chr2R_6358719_6358778 chr2R_6358234_6358254;chr2R_6359123_6359222 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.45 100.00 97.62 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG1407,RI_chr2R_5918919_5919093,I_chr2R_5918925_5919213,RI_chr2R_5918952_5919084,RI_chr2R_5918952_5919093 chr2R - chr2R_5918925_5919093 chr2R_5918925_5919084 chr2R_5918852_5918924;chr2R_5919094_5919184 25.00 20.83 23.53 15.49 23.08 25.00 35.29 19.61 26.53 25.00 29.41 30.00 NA 19.05 20.00 20.59 42.86 18.18 33.33 28.57 27.27 21.43 28.00 17.86 41.67 25.00 42.11 66.67 NA 30.77 24.24 NA NA 23.81 36.36 NA 33.33 24.00 25.00 15.38 36.36 24.49 25.00 21.43 NA 7.69 25.00 NA 22.92 12.50 27.59 30.00 28.57 26.32 21.74 5.56 31.82 NA K intron_retention homer chr2L - chr2L_6722431_6723192 chr2L_6722430_6722431;chr2L_6723192_6723193 chr2L_6722142_6722430;chr2L_6723193_6723254 4.88 9.09 0.00 0.00 4.55 NA 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 15.15 7.41 0.00 10.53 0.00 4.76 16.00 0.00 0.00 0.00 9.52 6.67 6.67 5.56 9.09 4.55 NA 12.50 2.78 5.26 15.00 5.00 6.06 2.94 7.41 NA 6.25 5.88 0.00 NA 6.25 NA NA 7.32 5.56 6.45 0.00 NA NA 0.00 0.00 6.67 NA K jcn_only_AD kst,I_chr3L_3367008_3367514 chr3L + chr3L_3367216_3367514;chr3L_3366963_3367514;chr3L_3367011_3367514;chr3L_3366774_3367514 chr3L_3367008_3367514 chr3L_3367515_3367614 0.53 1.95 0.00 0.52 0.00 0.65 0.73 1.29 0.48 0.71 0.50 0.92 0.00 0.39 0.29 0.20 0.37 0.47 0.93 0.00 0.00 0.85 1.26 1.09 0.00 1.46 0.00 1.04 1.48 0.37 0.40 0.37 0.00 0.85 0.00 1.60 0.53 0.56 0.32 0.00 1.56 0.16 1.14 0.91 0.60 0.74 0.44 1.25 0.17 0.74 1.34 1.31 0.00 1.00 0.27 1.01 0.00 0.66 K alternative_donor CG11790,CG11791 chr3R + chr3R_20876091_20876902;chr3R_20876340_20876902 chr3R_20875669_20876902 chr3R_20876903_20877278;chr3R_20875600_20875668 20.59 26.47 7.89 20.59 28.57 9.68 18.00 10.00 15.38 32.00 7.41 11.86 26.83 5.71 11.43 10.71 7.14 28.57 15.22 8.42 3.70 16.13 28.57 20.00 12.50 10.00 12.50 28.57 30.77 22.22 8.51 28.00 22.58 8.82 23.08 19.05 34.29 24.00 20.59 36.07 45.16 13.43 10.34 34.15 42.11 32.56 30.00 46.51 6.76 35.56 30.56 18.52 48.39 18.18 19.57 33.33 37.78 60.32 K alternative_acceptor CG4829,I_chrX_16717240_16717547 chrX + chrX_16717240_16717547;chrX_16717240_16717889 chrX_16717240_16717619 chrX_16717140_16717239;chrX_16717890_16718151 96.13 95.43 97.31 98.43 72.81 67.51 95.73 96.91 96.61 88.43 96.73 95.16 94.63 96.40 94.69 97.76 97.03 95.63 96.94 97.26 95.53 95.11 95.02 94.89 94.21 93.47 92.51 85.71 96.83 97.49 92.51 97.63 95.94 97.95 94.30 98.47 96.47 96.18 96.93 93.36 95.19 97.29 96.63 96.84 94.52 95.96 95.47 96.33 96.66 93.01 94.23 95.18 97.51 97.06 97.19 96.13 97.57 98.39 K alternative_acceptor CG6838,I_chr3L_22708171_22708254,I_chr3L_22709306_22709668 chr3L - chr3L_22708171_22708254 chr3L_22708190_22708254 chr3L_22708255_22708354;chr3L_22708071_22708170 98.90 97.06 97.62 100.00 97.62 100.00 98.28 98.33 99.06 100.00 100.00 97.50 97.73 100.00 98.28 100.00 100.00 100.00 100.00 98.25 100.00 100.00 97.78 95.18 98.00 100.00 98.80 96.67 96.77 100.00 97.30 100.00 98.11 98.25 100.00 100.00 98.90 98.55 98.95 98.97 100.00 97.98 100.00 97.18 98.57 100.00 98.90 97.62 96.59 100.00 98.72 100.00 100.00 98.51 98.00 100.00 97.16 100.00 K intron_retention mav,RI_chr4_645290_646129 chr4 - chr4_644240_644301 chr4_644239_644240;chr4_644301_644302 chr4_643850_644239;chr4_644302_645289 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 98.77 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 97.22 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG42550 chr3R - chr3R_3826590_3826647 chr3R_3826595_3826647 chr3R_3826648_3826710;chr3R_3826527_3826589 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 97.96 NA 100.00 100.00 97.96 NA NA 100.00 100.00 NA 100.00 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 97.06 NA 100.00 NA K intron_retention Pkc98E chr3R + chr3R_24870160_24870221 chr3R_24870159_24870160;chr3R_24870221_24870222 chr3R_24870089_24870159;chr3R_24870222_24871440 3.33 NA NA NA NA NA NA NA 6.67 NA NA NA NA NA 30.77 NA NA NA NA 0.00 NA 16.67 NA NA NA 21.43 NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA K jcn_only_AA CycA,RE_chr3L_11825347_11826111 chr3L - chr3L_11825344_11825973 chr3L_11825347_11825973 chr3L_11825974_11826431;chr3L_11825247_11825343 85.04 88.72 81.06 84.53 92.17 87.50 88.50 88.59 81.88 84.35 83.48 84.19 84.87 85.71 85.38 87.50 90.00 87.50 83.33 86.25 86.49 84.31 85.42 85.88 86.75 84.62 85.03 70.97 88.42 87.18 85.19 91.76 83.01 81.60 85.32 86.76 80.00 84.09 81.30 79.31 84.38 85.04 86.54 78.91 82.26 84.80 83.91 87.11 86.41 80.00 89.63 86.79 79.49 82.95 87.74 84.62 75.00 85.80 K mutually_exclusive Gs1l,I_chr2L_4456517_4456723 chr2L - chr2L_4455739_4456113,chr2L_4456333_4456385 chr2L_4455739_4455856,chr2L_4456076_4456385 chr2L_4456114_4456332 chr2L_4455857_4456075 chr2L_4455221_4455738;chr2L_4456386_4456516 31.43 24.62 32.53 48.91 23.08 30.95 15.09 26.79 22.56 34.69 25.61 20.32 20.27 22.86 21.55 47.17 27.03 26.58 25.97 24.26 29.17 38.27 36.42 30.97 24.76 27.27 48.94 48.57 29.69 39.05 35.10 36.67 41.03 26.36 31.46 52.38 32.69 31.51 30.73 29.28 33.82 24.74 31.43 29.03 40.21 33.70 33.33 36.62 26.24 40.19 33.79 27.71 35.16 33.33 20.87 33.33 35.51 40.83 K intron_retention Adk3 chr3R - chr3R_6714066_6714787 chr3R_6714065_6714066;chr3R_6714787_6714788 chr3R_6713005_6714065;chr3R_6714788_6715357 0.00 NA NA 0.00 NA NA NA 0.00 10.53 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA K alternative_donor CG4552,I_chr2L_1129503_1129818 chr2L + chr2L_1129503_1129818 chr2L_1129506_1129818 chr2L_1129819_1129918;chr2L_1129403_1129502 98.63 98.00 100.00 100.00 96.43 100.00 98.33 100.00 98.81 100.00 97.14 98.68 96.55 100.00 97.96 98.36 100.00 100.00 98.00 100.00 100.00 98.00 98.28 97.62 96.97 100.00 96.49 97.44 100.00 100.00 97.44 97.14 100.00 98.44 100.00 100.00 97.50 97.50 97.26 98.63 100.00 100.00 94.12 100.00 97.44 100.00 97.14 100.00 97.62 100.00 100.00 100.00 97.14 100.00 100.00 97.22 98.21 98.04 N alternative_donor sxc,I_chr2R_1203985_1205289,I_chr2R_1208121_1213310,I_chr2R_1213177_1213308 chr2R + chr2R_1194858_1194977;chr2R_1194919_1194977 chr2R_1194785_1194977 chr2R_1194978_1195157;chr2R_1194775_1194784 0.00 NA NA 0.00 NA NA NA 11.11 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA N alternative_donor mth chr3L - chr3L_345886_346102 chr3L_345886_346098 chr3L_345375_345885;chr3L_346103_346245 28.96 NA NA NA NA NA 40.00 NA 26.67 NA NA NA NA NA NA 31.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA K intron_retention CG12034 chr3L + chr3L_3219345_3219430 chr3L_3219344_3219345;chr3L_3219430_3219431 chr3L_3219092_3219344;chr3L_3219431_3220938 5.26 9.52 7.14 8.33 0.00 0.00 0.00 6.06 11.43 NA 11.76 10.26 0.00 0.00 6.06 0.00 0.00 0.00 10.71 8.51 NA 26.67 0.00 0.00 30.77 33.33 16.67 NA 5.26 8.33 3.57 0.00 2.86 0.00 5.26 16.67 8.00 11.11 11.11 0.00 10.53 0.00 NA 5.26 0.00 2.63 12.50 0.00 10.26 8.00 7.41 NA 0.00 0.00 4.35 0.00 0.00 2.38 K jcn_only_AA RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12922514_12922850;chr2R_12922514_12923159 chr2R_12922514_12923162 chr2R_12922340_12922513;chr2R_12923163_12923912 0.00 0.00 0.00 0.00 0.00 6.45 0.00 0.00 0.00 0.00 NA 1.69 0.00 0.00 0.00 0.00 2.44 0.00 0.00 2.00 NA 1.12 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.33 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 1.67 4.55 0.00 NA 0.00 NA 0.00 2.44 K intron_retention Reps,I_chr2L_11105525_11105656 chr2L - chr2L_11106012_11106066 chr2L_11106011_11106012;chr2L_11106066_11106067 chr2L_11105657_11106011;chr2L_11106067_11106618 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.52 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG11376,I_chr2L_100704_100835 chr2L + chr2L_99347_99658 chr2L_99346_99347;chr2L_99658_99659 chr2L_98527_99346;chr2L_99659_99723 100.00 100.00 100.00 95.24 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.24 100.00 100.00 100.00 100.00 NA 100.00 93.75 100.00 100.00 100.00 100.00 NA NA 96.15 100.00 93.75 NA NA 88.89 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 K jcn_only_AD Fas1,E_chr3R_12458491_12460799,I_chr3R_12458491_12460807,I_chr3R_12460976_12461267 chr3R + chr3R_12460105_12461267;chr3R_12460817_12461267 chr3R_12458491_12461267 chr3R_12461268_12461367 100.00 NA 90.48 NA 100.00 NA NA NA 97.06 NA NA NA NA NA NA NA NA NA NA 97.30 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K alternative_acceptor Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911708_5913333;chr2R_5911755_5913333 chr2R_5911803_5913333 chr2R_5913334_5913352;chr2R_5911703_5911707 50.00 18.18 45.45 55.56 60.00 50.00 57.14 40.00 54.55 28.57 38.46 53.85 71.43 66.67 53.33 52.94 41.67 66.67 40.00 50.00 50.00 50.00 50.00 NA NA 85.71 62.50 NA NA 50.00 47.37 NA NA 58.82 50.00 71.43 38.46 NA 75.00 28.57 NA 52.38 54.55 38.46 NA NA NA 30.00 60.87 NA 50.00 42.86 NA NA 64.29 NA NA NA K jcn_only_AA CG5261,I_chr2L_7428611_7428877 chr2L + chr2L_7428680_7428778;chr2L_7428680_7428877 chr2L_7428680_7428925 chr2L_7428612_7428679;chr2L_7428926_7428977 1.35 0.68 2.36 1.78 0.00 2.83 0.62 0.61 0.74 1.35 0.81 0.48 1.43 1.33 1.91 0.00 0.00 0.00 1.27 1.20 0.89 2.36 0.60 2.55 2.41 2.20 1.48 3.19 1.71 1.59 0.76 4.26 1.83 1.28 1.30 0.81 1.45 0.65 1.46 0.76 0.00 1.92 0.00 0.92 4.24 0.88 1.40 2.99 1.69 2.02 0.65 1.69 1.77 4.85 0.79 0.00 2.33 2.60 K intron_retention CG18094,swm chr2L + chr2L_19493383_19493665 chr2L_19493382_19493383;chr2L_19493665_19493666 chr2L_19493252_19493382;chr2L_19493666_19493957 19.52 NA NA 19.05 NA NA 19.05 14.29 25.00 NA NA 15.15 NA NA NA 15.38 36.36 NA NA 20.69 NA 20.00 15.38 NA NA NA 0.00 26.32 NA 26.09 14.29 NA 41.67 25.00 0.00 15.00 11.11 20.00 NA 25.00 33.33 19.05 NA 30.77 NA 12.50 23.53 25.00 24.14 18.75 12.50 23.53 NA NA NA NA 14.29 NA K jcn_only_AA CG17331,RI_chr2L_16731891_16731942 chr2L - chr2L_16731869_16731942 chr2L_16731891_16731942 chr2L_16731943_16732042;chr2L_16731791_16731868 0.17 0.00 0.00 0.00 0.43 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.33 0.24 0.00 0.00 0.55 0.21 0.47 0.00 0.23 0.80 0.00 0.48 0.40 0.00 0.34 0.00 0.46 0.00 0.00 0.65 0.00 0.41 0.37 0.17 0.44 0.98 0.70 0.54 0.00 0.87 0.00 0.89 0.23 0.00 0.44 0.66 0.00 0.82 0.18 0.00 K jcn_only_AD Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2364640;chr2L_2361586_2364480;chr2L_2361586_2365060;chr2L_2361586_2364302;chr2L_2361586_2364594;chr2L_2361586_2364312;chr2L_2361586_2364889 chr2L_2361586_2364836 chr2L_2361486_2361585;chr2L_2365061_2365065 0.31 0.00 1.55 1.37 1.76 0.00 1.59 1.36 1.49 1.02 1.14 0.00 0.00 0.00 0.00 0.31 0.54 1.69 0.89 0.52 0.00 0.00 0.00 0.69 0.00 0.99 0.00 0.00 0.00 0.56 0.48 1.18 1.57 0.56 0.00 1.47 0.00 0.00 0.00 0.91 1.81 0.25 2.74 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.99 0.00 0.46 0.00 0.48 0.50 K cassette CG9795 chr3R + chr3R_147770_148952 chr3R_147770_148069;chr3R_148218_148952 chr3R_148070_148217 chr3R_147567_147769;chr3R_148953_149344 0.00 0.00 0.00 2.94 0.00 NA 4.00 0.00 0.00 4.17 NA 2.94 6.67 0.00 0.00 0.00 0.00 NA 0.00 2.50 NA 2.04 5.00 3.45 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 1.27 0.00 0.00 3.33 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 2.70 4.76 0.00 0.00 0.00 0.00 0.00 4.00 0.00 K intron_retention Trf,I_chr2L_8073126_8073167 chr2L + chr2L_8073126_8073196 chr2L_8073125_8073126;chr2L_8073196_8073197 chr2L_8073026_8073125;chr2L_8073197_8073267 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 10.71 0.00 2.17 4.44 0.00 0.00 0.00 2.47 0.00 0.00 1.49 0.00 0.00 0.00 0.00 5.63 1.32 0.00 5.88 0.00 0.00 0.00 0.00 2.78 1.56 0.00 0.00 1.43 0.00 0.00 0.00 0.00 1.59 0.00 0.00 1.49 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 1.98 K intron_retention CG31997,I_chr4_175592_176390 chr4 - chr4_175774_176390 chr4_175773_175774;chr4_176390_176391 chr4_175653_175773;chr4_176391_176490 0.00 0.00 0.00 0.53 0.00 0.00 1.53 1.20 0.27 0.00 0.00 2.80 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 1.25 0.00 0.00 0.00 2.04 0.00 0.77 2.26 0.00 0.00 0.87 0.00 0.79 1.92 0.00 K alternative_donor RhoGAPp190,I_chrX_17544272_17544863,I_chrX_17546225_17546531 chrX - chrX_17536864_17537055 chrX_17536864_17537046 chrX_17536811_17536863;chrX_17537056_17537280 94.28 94.12 89.47 100.00 100.00 93.33 94.12 93.75 96.77 100.00 92.31 96.55 100.00 91.67 92.86 100.00 90.91 90.91 100.00 93.75 100.00 95.45 96.30 94.74 NA 100.00 92.31 88.89 93.75 100.00 100.00 100.00 95.65 90.00 91.67 100.00 100.00 100.00 100.00 87.88 94.74 93.75 92.86 93.75 94.44 92.86 94.12 92.31 96.30 100.00 95.24 92.31 88.89 90.00 100.00 90.00 100.00 93.75 K cassette CG1021,I_chr3R_2217711_2231099,I_chr3R_2217711_2231390,RI_chr3R_2217711_2231463,I_chr3R_2217742_2219453,I_chr3R_2218465_2231390,RI_chr3R_2218465_2231463,I_chr3R_2218682_2231463,I_chr3R_2219634_2231390,I_chr3R_2231383_2231463 chr3R - chr3R_2218465_2231463;chr3R_2217711_2231099;chr3R_2217711_2231463;chr3R_2218682_2231463 chr3R_2217711_2219453,chr3R_2218682_2219453,chr3R_2218465_2219453;chr3R_2219634_2231099,chr3R_2219634_2231463 chr3R_2219454_2219633 chr3R_2217642_2217710;chr3R_2231464_2231490 84.00 90.00 89.29 88.24 85.71 92.31 80.00 91.67 85.42 85.71 85.71 75.56 82.35 90.00 92.31 74.29 94.74 81.82 84.62 87.30 92.00 77.01 84.75 92.50 87.10 75.00 79.25 76.47 72.22 80.00 84.62 73.33 61.54 80.85 85.71 90.91 77.78 88.24 84.09 76.47 75.00 80.33 88.89 81.25 66.04 78.00 89.74 72.62 81.25 86.67 84.00 84.00 72.58 75.00 75.68 90.62 80.65 86.73 N cassette Dscam,F_chr2R_3219886_3228832,F_chr2R_3226043_3235353,F_chr2R_3227948_3235353,F_chr2R_3228738_3235353,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3219886_3235353;chr2R_3232857_3235353 chr2R_3232857_3232989,chr2R_3219886_3232989;chr2R_3233281_3235353 chr2R_3232990_3233280 chr2R_3219786_3219885;chr2R_3235354_3235453 100.00 61.11 65.00 41.67 100.00 100.00 63.64 58.82 100.00 100.00 100.00 100.00 50.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 21.05 100.00 100.00 100.00 100.00 100.00 100.00 40.00 100.00 100.00 100.00 40.74 100.00 100.00 100.00 100.00 100.00 100.00 61.29 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 100.00 55.56 100.00 100.00 NA 69.23 50.00 100.00 100.00 K intron_retention lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,RI_chr2L_22823579_22823640,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22820498_22831505 chr2L_22820497_22820498;chr2L_22831505_22831506 chr2L_22820398_22820497;chr2L_22831506_22831546 2.63 4.35 4.84 17.95 0.00 1.89 6.60 6.82 6.56 0.00 8.70 4.65 0.00 7.27 6.38 7.22 6.06 0.00 2.38 2.25 0.00 6.12 4.92 6.12 6.90 0.00 4.76 22.73 11.54 0.00 0.00 0.00 2.00 3.25 3.92 2.63 0.00 0.00 2.70 2.90 0.00 4.63 2.99 0.00 0.00 0.00 0.00 6.02 3.40 0.00 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor ird5,CG10185 chr3R - chr3R_11873877_11873963 chr3R_11873902_11873963 chr3R_11873964_11874533;chr3R_11873080_11873876 92.31 90.00 92.31 100.00 100.00 70.00 84.21 95.00 96.00 NA 100.00 93.33 90.91 87.50 91.67 93.33 100.00 100.00 91.67 92.31 81.82 100.00 91.67 88.89 NA 100.00 100.00 NA 77.78 NA 92.31 90.91 88.89 95.00 100.00 100.00 81.82 90.00 100.00 100.00 87.50 95.83 83.33 100.00 91.67 92.31 100.00 83.33 88.46 90.00 91.67 NA 100.00 87.50 100.00 100.00 90.91 94.74 K jcn_only_AA shep,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5155732_5156066;chr3L_5155711_5156066 chr3L_5155644_5156066 chr3L_5156067_5156229;chr3L_5155556_5155643 0.00 0.00 0.00 0.00 0.61 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.26 0.00 0.00 0.00 0.88 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Nup153,I_chrX_16495232_16495296 chrX + chrX_16501033_16501965 chrX_16501032_16501033;chrX_16501965_16501966 chrX_16500895_16501032;chrX_16501966_16502033 2.15 3.80 1.56 4.00 0.00 0.00 5.26 3.66 3.12 0.00 3.39 2.94 4.44 3.57 0.00 4.92 4.88 0.00 5.66 1.25 3.92 2.15 4.44 3.77 2.50 0.00 5.61 4.60 1.00 1.48 0.00 0.00 2.44 4.60 2.22 3.88 0.00 2.90 1.32 0.46 0.76 3.01 0.00 1.90 0.48 1.49 1.72 1.11 3.54 0.00 4.63 1.82 2.04 1.60 2.94 1.75 3.42 1.14 K intron_retention Mtor chr2R + chr2R_7747377_7747434 chr2R_7747376_7747377;chr2R_7747434_7747435 chr2R_7747045_7747376;chr2R_7747435_7747568 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 3.95 4.35 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.58 2.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10080 chr2R + chr2R_17517589_17517991 chr2R_17517588_17517589;chr2R_17517991_17517992 chr2R_17517568_17517588;chr2R_17517992_17518052 95.99 92.86 100.00 100.00 88.89 93.33 88.24 91.67 95.00 100.00 NA 95.24 90.00 92.86 100.00 91.67 90.00 100.00 90.00 100.00 91.67 88.89 95.24 93.75 100.00 100.00 93.33 100.00 96.15 100.00 100.00 96.15 96.15 88.89 93.33 100.00 94.74 100.00 100.00 100.00 100.00 96.15 100.00 94.74 95.83 100.00 93.33 97.22 95.24 94.44 100.00 91.67 100.00 93.33 100.00 100.00 93.33 100.00 K alternative_acceptor Tif-IA,RI_chr2L_22250854_22257652 chr2L + chr2L_22253333_22253424;chr2L_22253333_22253386 chr2L_22253333_22253421 chr2L_22253256_22253332;chr2L_22253425_22253685 59.14 55.70 54.29 54.17 48.57 57.38 63.36 59.87 61.94 54.55 62.86 62.04 60.00 56.41 60.49 58.79 55.38 61.36 57.73 60.75 56.82 59.38 59.14 57.14 56.52 54.55 60.00 55.56 53.85 56.52 63.56 62.16 53.66 62.89 60.87 57.41 61.11 60.94 57.14 60.00 54.39 60.31 60.53 61.97 57.14 61.63 56.52 58.49 59.73 60.56 57.89 62.30 54.55 61.36 56.32 59.42 60.26 50.75 K intron_retention Mgat1 chr2R - chr2R_16448259_16448318 chr2R_16448258_16448259;chr2R_16448318_16448319 chr2R_16448154_16448258;chr2R_16448319_16448749 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.70 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K intron_retention foxo,RI_chr3R_9883151_9883462,I_chr3R_9907161_9907218 chr3R + chr3R_9882747_9883462 chr3R_9882746_9882747;chr3R_9883462_9883463 chr3R_9882717_9882746;chr3R_9883463_9883562 90.91 NA NA 90.91 NA NA 90.91 92.86 96.00 NA NA 68.18 100.00 90.00 NA 77.78 86.67 80.00 90.91 100.00 NA NA 87.50 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 88.89 NA NA NA NA 93.33 NA NA NA NA NA NA 78.57 NA NA NA NA NA 100.00 NA NA NA K jcn_only_AA tefu,I_chr3R_11060517_11060585 chr3R - chr3R_11060517_11060585 chr3R_11060522_11060585 chr3R_11060586_11060685;chr3R_11060417_11060516 98.59 97.78 100.00 98.55 97.06 100.00 97.47 97.89 98.63 NA 100.00 98.55 100.00 100.00 100.00 98.44 95.92 100.00 100.00 100.00 100.00 100.00 97.67 98.04 100.00 100.00 93.88 NA NA 100.00 98.11 95.45 100.00 96.00 86.36 100.00 96.55 100.00 100.00 98.28 NA 99.01 100.00 NA NA 96.77 97.30 100.00 96.72 100.00 100.00 96.43 96.30 NA 97.06 96.15 97.83 100.00 K intron_retention RpS5a,I_chrX_17037805_17038646,I_chrX_17037805_17039048,I_chrX_17037805_17040830,snoRNA:Psi28S-1192d,snoRNA:Psi28S-1192c,snoRNA:Psi28S-1192b,snoRNA:Psi28S-1192a,I_chrX_17038786_17039048,snoRNA:Psi28S-2876,snoRNA:Psi18S-1854c,snoRNA:Psi28S-1135f,snoRNA:Psi18S-1854b,snoRNA:Psi28S-1135e,snoRNA:Psi18S-1854a,snoRNA:Psi28S-1135d,snoRNA:Psi28S-1135c,snoRNA:Psi28S-1135b,snoRNA:Psi28S-1135a chrX - chrX_17037805_17039048 chrX_17037804_17037805;chrX_17039048_17039049 chrX_17037705_17037804;chrX_17039049_17039148 26.79 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.06 60.00 NA NA NA NA NA 28.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA K intron_retention CG9715 chr3L + chr3L_16842873_16842934 chr3L_16842872_16842873;chr3L_16842934_16842935 chr3L_16842735_16842872;chr3L_16842935_16845499 0.00 0.00 0.00 4.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 8.51 7.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG4511,RI_chr3R_6680759_6681015 chr3R + chr3R_6680755_6681015 chr3R_6680759_6681015 chr3R_6681016_6681115;chr3R_6680659_6680754 1.01 0.95 0.83 0.55 0.00 0.83 1.40 1.99 0.74 2.00 2.02 1.60 1.49 1.12 0.64 0.79 0.91 1.10 2.94 1.01 0.00 1.27 0.93 0.00 0.00 0.78 0.90 1.27 1.20 1.28 2.01 1.18 0.76 1.62 0.00 1.43 0.83 0.00 0.90 2.05 0.00 1.56 1.10 1.14 0.00 1.82 1.43 0.95 0.43 1.11 1.04 0.00 1.72 1.52 1.65 0.98 0.81 0.75 K jcn_only_AD CG2017 chr3R - chr3R_1686127_1687891;chr3R_1686127_1688092;chr3R_1686127_1687510 chr3R_1686127_1687468 chr3R_1685454_1686126;chr3R_1688093_1688097 18.00 13.85 19.44 30.65 17.24 14.29 21.54 32.26 13.74 10.29 23.91 23.48 18.00 22.81 25.00 30.77 22.45 25.76 23.88 16.55 15.52 12.14 11.03 15.97 20.00 23.75 15.62 12.77 23.28 9.09 24.19 22.22 15.75 17.58 22.47 19.63 10.73 7.83 15.52 16.00 16.67 18.46 24.44 20.16 9.21 20.63 12.64 18.35 32.63 30.28 23.77 10.00 20.00 16.85 17.39 13.39 9.52 9.30 K intron_retention Nplp2,I_chr3L_13349726_13349896 chr3L + chr3L_13349947_13350107 chr3L_13349946_13349947;chr3L_13350107_13350108 chr3L_13349897_13349946;chr3L_13350108_13350349 98.49 98.20 98.70 98.47 98.38 98.87 97.41 98.72 98.21 97.52 99.04 98.19 98.76 97.92 98.18 98.11 98.67 98.84 98.87 97.98 99.21 99.50 98.68 97.48 98.67 98.90 96.57 94.25 98.52 97.98 98.63 98.54 98.57 99.02 98.90 98.32 96.27 98.93 98.63 98.98 96.53 99.16 98.63 97.89 99.16 98.49 98.84 99.31 98.82 98.19 98.47 95.93 97.98 98.37 98.47 98.01 98.17 98.35 K intron_retention borr chr2L - chr2L_9252351_9252634 chr2L_9252350_9252351;chr2L_9252634_9252635 chr2L_9251942_9252350;chr2L_9252635_9253116 0.00 2.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 5.88 0.00 0.00 4.76 0.00 0.00 4.11 0.00 6.98 1.20 0.00 3.85 0.00 3.92 0.00 0.00 5.13 0.00 0.00 0.00 0.00 2.63 2.38 0.00 0.00 2.47 3.39 0.00 0.00 0.00 8.33 0.00 3.85 3.23 6.25 0.00 0.00 0.00 0.00 3.92 2.53 0.00 3.12 6.12 0.00 K alternative_acceptor Sin3A,RI_chr2R_8468118_8468706,I_chr2R_8473578_8480185,RI_chr2R_8479951_8480233 chr2R - chr2R_8468118_8468706 chr2R_8468136_8468706 chr2R_8468707_8468806;chr2R_8468018_8468117 81.63 81.82 88.89 80.28 77.78 88.24 43.48 88.33 85.88 86.49 70.00 82.19 88.24 77.78 82.93 74.07 82.14 89.47 81.40 75.61 74.36 87.84 71.70 82.09 89.58 72.97 86.96 83.33 61.22 69.23 80.56 86.21 75.00 86.11 78.72 91.84 85.29 68.09 91.25 86.49 77.42 81.63 82.86 75.86 60.53 74.58 76.60 69.44 86.84 85.71 84.00 70.59 82.93 70.59 75.56 81.67 80.00 73.33 K alternative_acceptor mav,RI_chr4_645290_646129 chr4 - chr4_645563_645616 chr4_645568_645616 chr4_645617_646242;chr4_645398_645562 100.00 100.00 NA 100.00 NA NA 94.12 94.44 95.45 NA NA 91.67 100.00 90.00 NA 100.00 100.00 NA 100.00 94.44 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 90.00 NA 100.00 100.00 90.00 NA 88.89 NA NA 100.00 NA 93.75 NA NA NA 100.00 NA NA NA K alternative_acceptor RFI_chr2L_3030576_3030666,GABPI chr2L + chr2L_3031894_3032009 chr2L_3031894_3031953 chr2L_3031000_3031893;chr2L_3032010_3032255 100.00 98.82 98.44 98.88 100.00 100.00 100.00 99.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.75 100.00 98.51 100.00 99.38 98.33 100.00 100.00 100.00 100.00 98.28 98.65 100.00 100.00 100.00 98.70 98.91 100.00 100.00 100.00 100.00 99.08 100.00 98.97 100.00 99.01 100.00 100.00 100.00 100.00 99.30 98.88 99.13 99.12 98.92 99.01 98.25 98.51 100.00 98.61 100.00 100.00 100.00 K intron_retention CG18815 chr3L + chr3L_11622699_11623566 chr3L_11622698_11622699;chr3L_11623566_11623567 chr3L_11622681_11622698;chr3L_11623567_11623845 94.74 93.75 80.00 94.87 93.75 88.89 100.00 96.67 97.14 100.00 92.86 100.00 100.00 93.75 83.33 86.21 90.00 94.44 88.89 86.00 81.25 89.47 96.00 94.74 100.00 100.00 100.00 NA 92.31 100.00 95.24 86.96 88.57 82.05 100.00 100.00 95.00 100.00 95.83 96.67 94.74 95.56 81.25 91.67 91.18 93.75 94.74 100.00 90.62 100.00 87.50 94.44 100.00 94.74 95.00 94.44 96.15 88.89 K intron_retention CG32479,CG34056,CG34057 chr3L + chr3L_891777_891834 chr3L_891776_891777;chr3L_891834_891835 chr3L_891548_891776;chr3L_891835_893534 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Eb1,I_chr2R_2642491_2642549 chr2R + chr2R_2642350_2642403 chr2R_2642349_2642350;chr2R_2642403_2642404 chr2R_2642210_2642349;chr2R_2642404_2642486 0.95 0.73 1.32 0.20 0.90 0.99 1.42 1.24 1.26 0.00 2.02 0.72 1.60 0.00 1.33 1.30 0.62 0.34 1.61 0.00 1.83 1.80 2.37 0.96 4.19 6.21 4.12 4.64 15.49 0.00 1.36 1.55 0.00 0.76 0.90 0.00 0.40 0.66 0.62 0.47 4.13 1.75 0.36 0.91 0.00 1.33 1.55 1.04 0.95 0.38 1.47 0.00 0.00 0.00 1.09 0.00 0.29 0.93 K intron_retention CG8121,RI_chr3R_5183458_5183705 chr3R + chr3R_5161562_5161621 chr3R_5161561_5161562;chr3R_5161621_5161622 chr3R_5161423_5161561;chr3R_5161622_5161751 0.00 0.00 2.38 1.47 0.00 0.00 6.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 2.38 0.00 5.26 6.90 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 9.76 0.00 0.00 1.27 0.00 10.34 2.53 0.00 0.83 0.00 0.00 0.00 0.00 4.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG17508,RI_chr2R_1496995_1497120 chr2R + chr2R_1496337_1496517;chr2R_1496341_1496517;chr2R_1496303_1496517 chr2R_1496288_1496517 chr2R_1496518_1496994;chr2R_1496153_1496287 0.00 0.00 0.00 0.00 0.00 0.00 1.46 0.48 0.00 0.00 0.00 0.84 0.00 0.00 0.00 0.40 1.47 3.41 1.18 0.48 0.00 0.00 0.00 1.92 1.30 0.79 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.88 0.00 1.39 0.00 0.00 0.00 1.13 0.00 0.81 0.00 0.00 0.00 0.79 0.00 0.00 0.00 K intron_retention KrT95D,I_chr3R_19825840_19825904 chr3R - chr3R_19825840_19825901 chr3R_19825839_19825840;chr3R_19825901_19825902 chr3R_19825740_19825839;chr3R_19825902_19826502 0.91 0.00 1.80 5.06 0.00 0.00 1.32 2.50 0.92 1.77 4.44 2.14 0.00 1.41 1.57 0.00 0.00 0.91 0.00 1.08 0.00 1.14 1.46 0.00 0.69 0.00 3.05 5.62 1.01 0.50 1.57 0.00 0.84 1.56 1.16 1.31 1.47 0.00 0.72 1.51 1.53 1.68 0.00 0.00 0.85 1.61 0.66 0.44 0.00 0.93 2.03 0.00 0.00 1.63 0.00 0.00 0.00 0.00 K intron_retention CG8735,noncoding_5214 chr2R - chr2R_4487207_4487315 chr2R_4487206_4487207;chr2R_4487315_4487316 chr2R_4486977_4487206;chr2R_4487316_4487363 0.00 0.00 7.41 0.00 NA 3.23 0.00 0.00 7.84 0.00 NA 3.28 7.41 0.00 3.85 0.00 NA 0.00 0.00 2.50 6.67 0.00 0.00 0.00 0.00 4.55 3.57 1.82 14.63 0.00 7.32 0.00 7.14 6.67 0.00 4.84 1.72 0.00 1.54 3.12 6.12 4.44 0.00 1.72 2.08 2.35 0.00 2.86 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Klc,I_chr3L_12741779_12743062,I_chr3L_12741783_12742943,I_chr3L_12741838_12743062 chr3L - chr3L_12741783_12743132 chr3L_12741783_12743062 chr3L_12741738_12741782;chr3L_12743133_12743162 98.47 99.22 99.39 98.12 98.41 95.96 98.45 97.67 99.08 100.00 98.70 100.00 98.29 99.28 99.30 98.47 97.20 98.44 100.00 99.12 98.78 100.00 98.24 98.00 97.67 98.28 97.73 100.00 97.53 95.24 98.65 98.61 98.00 98.86 98.78 98.10 98.31 100.00 98.29 97.64 97.87 97.90 100.00 97.97 100.00 99.33 98.16 97.73 99.17 99.18 97.44 98.40 100.00 98.61 99.41 100.00 98.79 97.73 K intron_retention tra2,REFI_chr2R_10491644_10491701 chr2R - chr2R_10491629_10491701 chr2R_10491628_10491629;chr2R_10491701_10491702 chr2R_10491620_10491628;chr2R_10491702_10491801 17.65 NA 23.08 18.18 NA NA 4.55 24.00 3.85 NA NA 17.86 26.67 30.77 25.00 8.70 NA 12.50 NA 14.63 6.67 22.22 26.32 40.00 NA 19.05 53.85 42.86 NA NA 14.29 13.33 NA NA 18.75 17.65 NA NA 13.33 16.67 20.00 13.04 23.08 NA 6.25 16.67 21.05 14.29 18.52 NA 10.53 NA NA NA 14.29 14.29 17.65 14.29 K jcn_only_AD CG4389,I_chr2L_9576230_9576665 chr2L - chr2L_9576230_9576665;chr2L_9576230_9576517 chr2L_9576230_9576635 chr2L_9576130_9576229;chr2L_9576666_9576755 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 K multi_cassette CG1021,I_chr3R_2217711_2231099,I_chr3R_2217711_2231390,RI_chr3R_2217711_2231463,I_chr3R_2217742_2218601,I_chr3R_2217742_2219453,I_chr3R_2218465_2231390,RI_chr3R_2218465_2231463,I_chr3R_2218682_2231463,I_chr3R_2219634_2231390,RI_chr3R_2231206_2231270,I_chr3R_2231271_2231390,I_chr3R_2231285_2231463,I_chr3R_2231383_2231463 chr3R - chr3R_2218465_2231463 chr3R_2218465_2218601;chr3R_2218682_2219453;chr3R_2219634_2231463 chr3R_2218602_2218681;chr3R_2219454_2219633 chr3R_2218365_2218464;chr3R_2231464_2231490 75.00 NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA 60.00 NA NA NA NA NA 50.00 60.00 NA NA NA 100.00 100.00 50.00 NA 60.00 NA 75.00 100.00 75.00 NA 100.00 NA NA 80.00 50.00 80.00 NA 75.00 NA 80.00 NA 42.86 50.00 75.00 80.00 NA NA NA NA 75.00 NA 50.00 K alternative_donor Hsc70Cb chr3L + chr3L_14030212_14030577 chr3L_14030237_14030577 chr3L_14030578_14030850;chr3L_14030158_14030211 87.50 89.29 82.76 82.35 66.67 94.12 97.14 89.83 85.06 94.12 80.00 92.00 88.89 83.33 79.31 91.18 78.95 72.00 78.05 87.67 80.00 87.50 86.67 95.00 100.00 94.74 100.00 91.67 94.64 76.67 75.00 80.65 88.24 86.00 96.00 96.00 94.74 75.00 81.82 97.37 96.00 83.33 86.11 87.50 87.88 84.38 70.83 90.91 87.50 85.71 79.31 100.00 94.12 92.86 80.00 94.74 82.61 90.24 K intron_retention CG42518,F_chr2R_14055227_14055470 chr2R + chr2R_14055644_14055712 chr2R_14055643_14055644;chr2R_14055712_14055713 chr2R_14055278_14055643;chr2R_14055713_14055885 1.89 1.23 2.44 5.17 0.00 0.00 3.39 5.10 1.33 2.99 3.51 2.54 1.45 0.00 3.49 0.00 0.00 3.28 2.22 1.26 0.00 2.70 3.41 0.00 0.00 3.75 5.06 2.86 12.90 4.00 3.09 1.89 0.00 0.00 3.28 6.06 1.32 1.47 1.16 2.36 3.45 2.45 1.47 2.30 0.00 5.04 1.12 1.94 1.32 1.82 5.63 1.96 0.00 0.00 1.09 0.00 0.00 0.87 K intron_retention mud chrX + chrX_14150134_14150517 chrX_14150133_14150134;chrX_14150517_14150518 chrX_14150034_14150133;chrX_14150518_14150790 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.51 0.00 3.85 0.00 2.44 0.00 5.56 0.00 2.78 0.00 0.00 2.82 4.44 0.00 0.00 12.50 NA 8.70 11.11 0.00 0.00 0.00 2.70 0.00 3.57 2.00 0.00 3.57 0.00 2.38 0.00 0.00 2.38 0.00 0.00 2.13 2.33 0.00 2.50 0.00 6.25 3.12 4.55 0.00 4.44 0.00 0.00 K intron_retention endoA chr3R + chr3R_14732743_14732921 chr3R_14732742_14732743;chr3R_14732921_14732922 chr3R_14732332_14732742;chr3R_14732922_14734172 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 1.18 0.00 0.00 4.00 0.00 0.00 0.00 2.94 6.67 0.00 2.38 2.13 0.00 1.14 0.00 0.00 0.00 0.00 0.00 3.45 4.76 0.00 0.00 0.00 0.00 0.00 2.33 0.00 2.78 2.90 0.00 0.00 0.00 0.00 NA 5.00 0.00 0.00 0.00 K intron_retention CG31523,I_chr3R_294322_304799,RI_chr3R_298911_304354 chr3R - chr3R_294127_294185 chr3R_294126_294127;chr3R_294185_294186 chr3R_293936_294126;chr3R_294186_294321 0.00 0.00 0.28 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.37 2.41 0.00 0.83 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.37 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3R_17846331_17846423,noncoding_18278 chr3R - chr3R_17849634_17849713 chr3R_17849633_17849634;chr3R_17849713_17849714 chr3R_17849419_17849633;chr3R_17849714_17849945 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention MB8.chr3R.pasa.66,CG1091,I_chr3R_2910029_2910096,RI_chr3R_2910490_2910686,RI_chr3R_2911041_2911135,RI_chr3R_2946518_2946663 chr3R - chr3R_2910029_2910096 chr3R_2910028_2910029;chr3R_2910096_2910097 chr3R_2909929_2910028;chr3R_2910097_2910162 100.00 92.31 100.00 92.86 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 92.31 100.00 NA 100.00 100.00 96.00 90.91 NA 100.00 93.33 NA NA 100.00 90.91 92.86 92.86 100.00 100.00 100.00 94.74 90.91 100.00 100.00 100.00 94.12 94.12 91.67 95.24 100.00 91.67 100.00 100.00 100.00 80.00 93.75 100.00 93.33 100.00 100.00 NA 100.00 100.00 100.00 88.89 K intron_retention pit,RI_chr3R_17861471_17861539 chr3R + chr3R_17861471_17861539 chr3R_17861470_17861471;chr3R_17861539_17861540 chr3R_17861465_17861470;chr3R_17861540_17861639 95.34 100.00 90.91 95.24 NA 100.00 92.31 95.45 89.66 NA 88.89 100.00 91.67 91.67 92.86 95.65 100.00 NA 93.33 90.00 NA 92.86 92.86 100.00 100.00 100.00 100.00 94.44 100.00 94.12 100.00 92.31 95.24 100.00 90.91 100.00 90.91 NA 100.00 85.71 100.00 100.00 NA 90.00 100.00 95.45 92.86 95.45 96.88 100.00 100.00 100.00 92.31 NA 90.91 93.75 94.74 95.83 K intron_retention CG17528,I_chr2R_706735_711443,I_chr2R_707374_711443 chr2R - chr2R_705236_705289 chr2R_705235_705236;chr2R_705289_705290 chr2R_704947_705235;chr2R_705290_705439 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4709,RI_chr2L_9954545_9954595 chr2L + chr2L_9954535_9954595 chr2L_9954534_9954535;chr2L_9954595_9954596 chr2L_9954445_9954534;chr2L_9954596_9954601 16.91 NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA 26.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG5991 chr3R + chr3R_19876703_19877411;chr3R_19876703_19877421 chr3R_19876703_19877425 chr3R_19876688_19876702;chr3R_19877426_19877477 0.00 NA NA 0.00 NA NA 3.23 1.85 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 4.35 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 K jcn_only_AD osa,I_chr3R_13542657_13542834,I_chr3R_13542657_13543500,I_chr3R_13542657_13543662,I_chr3R_13542657_13543668 chr3R - chr3R_13542657_13543968;chr3R_13542657_13543500;chr3R_13542657_13543662;chr3R_13542657_13543668;chr3R_13542657_13543677 chr3R_13542657_13542834 chr3R_13542557_13542656;chr3R_13543969_13544017 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.45 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.56 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 2.01 0.00 1.41 0.87 0.00 0.00 1.11 0.43 0.00 0.60 0.00 0.79 0.00 0.00 3.03 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor tsh,I_chr2L_21829859_21830276 chr2L + chr2L_21829859_21833370 chr2L_21829859_21830276 chr2L_21829759_21829858;chr2L_21833371_21833470 4.26 2.00 4.44 4.44 2.94 2.94 5.41 4.62 3.53 5.88 3.23 4.92 8.00 5.26 2.27 3.77 2.86 8.33 2.38 2.94 3.45 6.45 4.62 1.72 3.57 2.44 6.38 22.73 6.67 4.44 3.33 4.35 7.69 4.48 4.88 5.00 3.39 1.67 4.00 2.94 5.26 2.94 2.86 4.44 0.00 2.50 4.17 8.82 4.71 3.12 3.37 4.26 2.94 0.00 4.26 5.26 4.35 6.25 K intron_retention CG12163,I_chr3R_1068862_1077145,RI_chr3R_1069977_1077139 chr3R - chr3R_1069977_1077145 chr3R_1069976_1069977;chr3R_1077145_1077146 chr3R_1069877_1069976;chr3R_1077146_1077239 67.86 71.43 64.52 86.36 77.78 84.62 86.21 73.08 77.19 52.38 77.78 53.33 58.33 94.12 78.38 78.95 83.33 93.75 93.33 70.83 50.00 89.19 64.29 62.50 76.47 68.18 70.59 50.00 59.38 65.38 67.86 10.53 47.92 76.47 67.86 24.49 73.08 62.07 56.25 42.86 20.00 75.00 85.00 60.00 16.13 17.86 NA 54.72 82.93 NA 74.07 65.00 29.41 NA 87.50 40.00 NA 30.00 K alternative_donor Unc-76,RI_chrX_1983640_1985001,I_chrX_2002576_2003165 chrX + chrX_1975693_1985001 chrX_1983640_1985001 chrX_1985002_1985100;chrX_1974778_1975692 0.71 0.83 0.63 0.49 0.83 0.74 1.28 0.49 0.69 0.81 0.97 1.04 1.05 0.81 0.68 0.65 0.95 0.94 0.71 1.10 0.75 0.65 0.50 0.68 0.81 0.85 1.38 6.25 1.05 0.45 0.70 0.70 0.48 0.96 0.65 0.73 0.60 0.78 0.47 0.67 0.54 0.81 0.90 0.53 0.43 0.50 0.99 0.69 0.87 0.71 0.66 0.98 0.00 0.00 0.60 0.98 0.00 0.31 K alternative_donor DMAP1,I_chr2R_16531774_16531833,I_chr2R_16532870_16532932 chr2R + chr2R_16532870_16532932 chr2R_16532874_16532932 chr2R_16532933_16533032;chr2R_16532770_16532869 96.30 95.00 94.44 95.83 94.74 100.00 94.12 100.00 100.00 100.00 100.00 96.67 100.00 92.31 94.12 93.33 100.00 93.33 93.75 96.00 100.00 100.00 96.67 96.30 100.00 93.75 92.00 95.24 100.00 94.12 92.86 100.00 95.83 100.00 100.00 92.86 91.30 100.00 100.00 92.00 95.24 90.00 91.67 92.31 95.83 96.30 96.77 100.00 100.00 97.06 96.00 100.00 95.24 100.00 100.00 96.00 100.00 100.00 K intron_retention msps,I_chr3R_11877071_11877796 chr3R + chr3R_11882514_11883015 chr3R_11882513_11882514;chr3R_11883015_11883016 chr3R_11882014_11882513;chr3R_11883016_11883111 9.52 NA 0.00 NA 0.00 NA NA 12.50 0.00 NA NA 14.29 NA NA NA 15.79 15.38 NA NA 4.08 NA 0.00 20.00 NA NA NA NA NA NA NA 10.00 NA NA 9.52 NA 3.23 14.29 NA NA NA NA 0.00 NA NA NA NA 0.00 0.00 14.29 NA 20.00 NA NA NA NA NA NA NA N jcn_only_AD Fpps chr2R - chr2R_7194465_7194765 chr2R_7194465_7194535 chr2R_7194370_7194464;chr2R_7194766_7195007 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Cctgamma chr3R + chr3R_12473318_12473557;chr3R_12473479_12473557;chr3R_12473420_12473557;chr3R_12473424_12473557;chr3R_12473464_12473557 chr3R_12473409_12473557 chr3R_12473558_12473651;chr3R_12473311_12473317 0.00 3.57 4.00 0.00 4.35 0.00 2.78 0.00 1.59 0.00 0.00 3.03 5.56 4.00 7.41 3.23 4.17 0.00 0.00 0.00 0.00 0.00 0.00 3.85 7.14 5.26 3.70 0.00 0.00 0.00 3.70 0.00 0.00 2.78 0.00 7.69 0.00 4.55 4.76 0.00 10.00 2.63 0.00 0.00 0.00 5.56 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 K intron_retention ens,I_chr3L_4130719_4131120 chr3L - chr3L_4128974_4129650 chr3L_4128973_4128974;chr3L_4129650_4129651 chr3L_4128946_4128973;chr3L_4129651_4129788 6.28 NA NA NA NA NA 14.29 NA 9.52 NA NA 2.13 NA NA NA 6.67 NA 0.00 NA 0.00 NA NA 0.00 14.29 NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 15.00 NA 6.67 NA NA NA NA NA 30.77 5.88 NA NA NA NA NA NA NA NA NA N jcn_only_AD Hcf,I_chr4_391984_392875 chr4 + chr4_380985_381212;chr4_380911_381212;chr4_380646_381212;chr4_380607_381212 chr4_380602_381212 chr4_381213_381632;chr4_380600_380601 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG2249,RI_chr2R_5937150_5937205,I_chr2R_5937410_5937470 chr2R + chr2R_5937405_5937464 chr2R_5937410_5937464 chr2R_5937465_5937533;chr2R_5937341_5937404 79.37 80.18 84.39 86.29 79.21 81.25 79.23 79.29 75.78 81.82 80.49 81.97 73.91 74.81 85.26 84.02 77.17 80.51 82.64 80.17 85.11 78.26 78.89 74.80 79.00 86.49 77.97 79.58 77.60 80.30 81.94 81.99 73.48 84.38 78.83 79.53 78.81 78.40 77.20 75.94 76.36 86.32 77.92 76.00 78.40 79.89 80.03 76.92 81.16 78.85 79.51 75.00 78.60 79.95 84.82 77.88 79.37 82.58 K alternative_donor bl,I_chr2R_16481586_16483061,mir-7 chr2R + chr2R_16493357_16493948 chr2R_16493382_16493948 chr2R_16493949_16494359;chr2R_16493187_16493356 1.64 0.78 0.91 1.19 0.98 0.89 0.76 2.45 1.92 1.49 2.60 1.96 1.23 2.42 2.17 2.29 1.98 0.81 3.23 3.36 2.22 0.71 1.84 3.00 0.89 2.26 1.37 1.49 4.04 0.93 1.85 1.64 1.82 1.64 0.85 2.50 2.33 0.81 1.79 0.57 1.83 2.06 1.10 1.96 1.48 2.50 2.21 1.55 1.17 2.17 1.07 0.84 0.90 2.23 1.26 0.59 1.13 0.62 K intron_retention Upf2,I_chrX_7969268_7969358,I_chrX_7969312_7969358 chrX - chrX_7969312_7969358 chrX_7969311_7969312;chrX_7969358_7969359 chrX_7969212_7969311;chrX_7969359_7969458 91.67 NA NA 91.67 NA 88.89 91.67 94.12 100.00 NA NA 92.86 NA NA 81.82 100.00 NA 90.00 91.67 93.33 NA 88.89 100.00 100.00 NA 91.67 100.00 NA NA NA 90.00 NA NA 100.00 NA NA NA NA NA 91.67 NA 90.91 100.00 NA NA NA NA NA 93.33 NA NA NA NA NA 90.91 NA NA NA K jcn_only_AD bbc,REI_chr2R_9379401_9381986 chr2R - chr2R_9379401_9382398 chr2R_9379401_9381755 chr2R_9379301_9379400;chr2R_9382399_9382462 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG5245,Pros25 chr3R + chr3R_8257945_8258008 chr3R_8257944_8257945;chr3R_8258008_8258009 chr3R_8257789_8257944;chr3R_8258009_8258353 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.57 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.33 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 K alternative_donor CG8080,REI_chr2R_4979159_4979234,I_chr2R_4979276_4979936 chr2R - chr2R_4979159_4979936 chr2R_4979159_4979234 chr2R_4979059_4979158;chr2R_4979937_4980036 8.33 8.70 13.33 11.11 6.67 5.56 36.36 9.52 12.50 7.69 12.50 13.33 27.78 9.09 8.70 8.33 11.11 7.14 9.52 11.76 22.22 33.33 4.76 6.67 14.29 10.00 17.65 10.00 NA 7.69 5.56 10.00 4.76 12.90 7.69 12.50 7.14 5.26 6.67 6.67 11.11 10.81 5.56 4.00 10.00 3.57 7.14 6.67 8.89 5.56 7.41 5.00 0.00 NA 6.90 5.56 7.41 3.03 K cassette bol,RI_chr3L_9117011_9118271 chr3L - chr3L_9106588_9118266;chr3L_9106588_9118271 chr3L_9106588_9116715;chr3L_9117011_9118271,chr3L_9117011_9118266 chr3L_9116716_9117010 chr3L_9106512_9106587;chr3L_9118272_9118272 100.00 NA 80.00 100.00 NA 80.00 100.00 88.89 92.31 NA 80.00 100.00 85.71 100.00 100.00 100.00 NA NA 87.50 71.43 100.00 NA 100.00 NA NA NA NA NA NA NA 80.00 NA NA 100.00 NA NA NA NA NA NA NA 90.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K alternative_donor SD23414,CG9132,I_chrX_16693612_16694097,I_chrX_16693612_16694529,I_chrX_16696492_16696589 chrX - chrX_16693612_16694097;chrX_16693612_16696171 chrX_16693612_16694558 chrX_16693512_16693611;chrX_16696172_16696233 98.59 98.78 98.59 97.47 98.15 98.41 98.59 98.88 98.53 98.21 97.87 99.16 97.96 97.96 98.65 98.44 97.87 98.48 100.00 99.33 98.28 98.51 99.06 99.04 100.00 100.00 97.33 96.08 98.57 98.68 98.53 96.51 98.26 98.85 98.44 98.59 99.24 98.92 99.26 99.14 97.14 99.25 97.73 98.59 98.35 98.48 97.89 97.98 99.13 98.90 98.81 98.21 98.89 99.03 98.65 99.10 99.22 97.78 K intron_retention lack chr2R + chr2R_13489853_13489908 chr2R_13489852_13489853;chr2R_13489908_13489909 chr2R_13487767_13489852;chr2R_13489909_13490108 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention wds,egh,mit(1)15 chrX + chrX_2480583_2480793 chrX_2480582_2480583;chrX_2480793_2480794 chrX_2480025_2480582;chrX_2480794_2481419 0.00 0.00 0.00 2.78 4.76 0.00 0.00 6.67 5.26 NA 0.00 0.00 0.00 4.35 0.00 3.70 0.00 0.00 5.00 8.00 5.00 0.00 0.00 0.00 0.00 0.00 6.67 9.09 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 2.70 9.09 0.00 5.88 0.00 0.00 0.00 12.50 0.00 5.26 7.27 0.00 0.00 NA 0.00 0.00 0.00 0.00 7.69 0.00 K jcn_only_AA CG8632,CG8646 chr2R + chr2R_8540633_8540691 chr2R_8540633_8540686 chr2R_8540334_8540632;chr2R_8540692_8541563 96.72 93.10 96.00 94.23 NA 100.00 100.00 97.44 98.15 NA NA 96.15 NA 100.00 96.43 100.00 NA 88.89 95.65 94.92 100.00 96.43 94.74 95.12 92.86 97.44 95.56 NA 100.00 94.87 96.55 100.00 96.00 94.87 NA 100.00 94.12 97.44 89.74 98.73 100.00 100.00 100.00 100.00 100.00 97.87 96.67 96.72 96.36 95.00 100.00 100.00 90.91 100.00 96.77 100.00 NA 92.59 K intron_retention Bub3,I_chr3R_25500779_25500838 chr3R - chr3R_25500786_25500838 chr3R_25500785_25500786;chr3R_25500838_25500839 chr3R_25499716_25500785;chr3R_25500839_25500938 0.00 0.00 0.62 0.00 1.32 0.00 0.63 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 1.21 2.00 1.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.42 0.65 1.08 1.76 0.64 0.83 0.00 0.00 1.65 0.00 0.00 0.80 0.00 0.94 0.00 1.03 0.55 0.00 0.00 0.40 0.82 K jcn_only_AD Vps20 chr2R + chr2R_18496124_18496188 chr2R_18496135_18496188 chr2R_18496189_18496298;chr2R_18496038_18496123 0.45 0.00 0.00 1.05 0.00 0.00 0.00 0.46 0.23 0.73 0.00 0.72 0.00 1.06 0.00 1.03 0.00 0.00 0.00 0.18 0.00 0.65 0.60 0.38 0.00 1.54 0.52 0.45 0.52 0.00 3.17 0.00 0.69 1.04 0.62 0.00 0.85 0.00 0.49 0.00 0.79 0.29 1.79 1.56 0.85 0.68 0.85 0.00 1.13 0.00 1.35 0.63 0.32 0.28 0.00 0.58 0.35 0.57 K jcn_only_AD CG10365,I_chr3R_19549381_19554106,I_chr3R_19554176_19554388 chr3R + chr3R_19549425_19554388;chr3R_19549381_19554388 chr3R_19549452_19554388 chr3R_19554389_19554488;chr3R_19549281_19549380 3.23 3.33 8.11 2.38 0.00 0.00 4.35 3.33 3.39 0.00 8.70 2.86 NA 0.00 8.33 7.14 0.00 4.35 0.00 5.66 4.35 NA 0.00 0.00 3.85 0.00 0.00 NA 4.17 2.38 5.88 4.55 2.44 3.03 0.00 NA 3.03 0.00 2.70 6.35 6.98 4.62 0.00 5.56 2.70 8.77 5.41 4.23 5.17 0.00 2.63 0.00 NA 2.70 5.41 3.23 NA 7.14 K intron_retention I_chr2L_822032_822857,dock chr2L + chr2L_831920_832994 chr2L_831919_831920;chr2L_832994_832995 chr2L_831714_831919;chr2L_832995_833208 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.80 100.00 100.00 100.00 100.00 100.00 100.00 98.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 98.15 100.00 97.73 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 K intron_retention pod1 chrX + chrX_6703171_6703406 chrX_6703170_6703171;chrX_6703406_6703407 chrX_6703097_6703170;chrX_6703407_6703439 0.00 0.00 0.00 0.00 NA NA 0.00 2.78 0.00 NA 0.00 6.06 0.00 4.35 0.00 6.25 0.00 0.00 NA 4.44 0.00 0.00 NA 6.25 NA NA 0.00 6.25 0.00 13.33 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 9.09 NA 0.00 0.00 0.00 NA 7.69 NA 4.55 4.35 NA 0.00 NA NA NA 0.00 NA 0.00 NA K alternative_acceptor CG5871,NELF-A chr3R + chr3R_17047473_17047538 chr3R_17047473_17047531 chr3R_17047048_17047472;chr3R_17047539_17048572 100.00 93.33 94.12 100.00 91.67 100.00 100.00 94.12 85.71 NA 84.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 95.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 88.89 92.86 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 96.30 100.00 100.00 92.86 100.00 100.00 100.00 95.65 92.31 100.00 88.89 100.00 100.00 100.00 100.00 100.00 90.00 N intron_retention CG3287,I_chr2R_2700203_2700285 chr2R + chr2R_2701259_2702564 chr2R_2701258_2701259;chr2R_2702564_2702565 chr2R_2700678_2701258;chr2R_2702565_2703029 2.08 0.00 0.00 6.25 4.55 0.00 2.86 4.44 3.17 NA 12.50 7.50 6.25 0.00 0.00 6.38 0.00 0.00 5.88 2.74 11.76 2.08 1.72 5.71 0.00 2.94 3.70 NA 18.92 0.00 0.00 NA 0.00 12.20 0.00 0.00 5.41 0.00 5.00 0.00 11.11 0.00 0.00 6.67 NA 12.50 0.00 5.41 3.51 0.00 4.55 0.00 0.00 0.00 0.00 0.00 10.53 0.00 K intron_retention CG31612,E_chr2L_21775447_21821182 chr2L - chr2L_21766161_21772999 chr2L_21766160_21766161;chr2L_21772999_21773000 chr2L_21765963_21766160;chr2L_21773000_21773178 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 K alternative_acceptor CG30344,I_chr2R_5033478_5033544,RI_chr2R_5033951_5034150,I_chr2R_5036518_5036570 chr2R + chr2R_5033478_5034150 chr2R_5033478_5033544 chr2R_5033378_5033477;chr2R_5034151_5034250 5.26 8.00 10.00 4.55 6.25 3.57 8.93 5.77 6.35 9.09 7.14 5.71 14.29 4.00 2.70 6.12 6.25 3.45 5.88 5.56 10.00 9.09 5.45 2.56 3.70 4.55 5.26 4.35 4.00 3.57 6.90 5.56 4.35 8.70 3.85 3.45 8.33 3.45 2.27 4.17 4.55 7.27 8.00 3.85 15.38 2.78 2.94 8.33 8.20 3.45 3.39 3.70 6.90 4.00 3.70 4.76 4.44 5.56 K intron_retention CG6498,I_chr3L_15561224_15561305 chr3L + chr3L_15567572_15567635 chr3L_15567571_15567572;chr3L_15567635_15567636 chr3L_15567256_15567571;chr3L_15567636_15568528 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 4.44 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 K intron_retention mthl10 chr3L - chr3L_333641_334974 chr3L_333640_333641;chr3L_334974_334975 chr3L_333522_333640;chr3L_334975_335169 60.00 NA NA 35.29 NA NA 100.00 53.85 87.50 NA NA NA 33.33 NA NA NA NA NA 60.00 66.67 NA NA 45.45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 63.64 NA NA NA NA NA NA 58.33 NA 70.00 NA NA NA NA NA NA NA K intron_retention r-l chr3R - chr3R_16897547_16898210 chr3R_16897546_16897547;chr3R_16898210_16898211 chr3R_16896552_16897546;chr3R_16898211_16898727 3.45 5.06 0.00 10.71 4.26 0.00 4.17 3.92 1.92 0.00 2.00 1.61 0.00 0.00 3.28 8.33 0.00 2.56 0.00 0.72 0.00 31.71 8.25 4.08 3.92 7.14 5.56 4.21 2.22 6.98 0.00 2.70 2.75 0.00 5.66 0.00 5.34 2.80 4.04 3.66 3.85 1.74 0.00 4.00 3.49 6.45 3.12 7.46 1.90 3.57 4.48 5.45 0.00 3.64 4.17 2.22 3.45 0.00 K intron_retention CycT,I_chr3L_17548631_17550687 chr3L - chr3L_17549520_17549595 chr3L_17549519_17549520;chr3L_17549595_17549596 chr3L_17549474_17549519;chr3L_17549596_17550817 18.27 15.25 18.31 40.51 20.63 23.21 16.25 33.33 18.37 15.79 21.31 35.54 16.00 14.06 24.36 25.81 19.57 15.52 29.79 14.58 25.00 23.38 16.36 13.10 27.78 24.00 32.77 47.56 31.67 16.67 18.42 12.12 16.92 18.48 22.22 12.68 14.38 12.99 11.92 18.27 29.17 19.47 17.86 16.46 10.81 12.20 10.26 21.31 18.42 17.02 14.29 12.77 13.89 21.05 21.88 12.77 12.50 17.86 K alternative_acceptor CG2064 chr2R + chr2R_3553522_3553627;chr2R_3553522_3553650 chr2R_3553522_3553619 chr2R_3553444_3553521;chr2R_3553651_3553914 0.30 0.00 0.00 0.33 0.00 0.00 0.75 0.00 0.87 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.27 0.00 0.70 0.62 0.40 0.59 0.00 0.78 0.96 1.58 0.68 0.42 0.00 0.68 0.39 0.00 0.96 0.66 0.57 0.49 0.45 1.74 0.00 0.00 1.22 1.86 0.40 0.00 1.56 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.56 K cassette gish chr3R + chr3R_12115562_12118445 chr3R_12115562_12118197;chr3R_12118273_12118445 chr3R_12118198_12118272 chr3R_12115353_12115561;chr3R_12118446_12118556 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention snama chr2R + chr2R_19977229_19977288 chr2R_19977228_19977229;chr2R_19977288_19977289 chr2R_19977079_19977228;chr2R_19977289_19977582 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 4.26 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention cv-c,RI_chr3R_10258928_10265129,RI_chr3R_10301040_10306363,RI_chr3R_10306635_10307255 chr3R - chr3R_10218612_10218673 chr3R_10218611_10218612;chr3R_10218673_10218674 chr3R_10217416_10218611;chr3R_10218674_10218853 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Pka-R1,CG3288 chr3L + chr3L_20826758_20826832 chr3L_20826758_20826829 chr3L_20826383_20826757;chr3L_20826833_20826969 59.09 55.56 59.09 37.50 70.59 75.00 65.00 68.18 53.12 50.00 66.67 65.52 40.00 60.00 50.00 54.55 63.64 58.82 43.75 67.86 53.33 71.79 63.33 55.00 58.82 53.33 51.85 68.18 61.29 59.09 69.23 52.63 62.16 52.00 60.00 46.15 62.50 73.08 58.82 53.85 56.52 59.46 41.18 61.11 64.00 57.69 60.71 62.79 51.85 59.09 63.64 35.71 61.90 50.00 55.00 57.14 57.14 78.12 K intron_retention CG14741 chr3R - chr3R_7897251_7898007 chr3R_7897250_7897251;chr3R_7898007_7898008 chr3R_7897104_7897250;chr3R_7898008_7898194 1.11 0.00 1.18 4.85 0.00 0.64 1.32 1.95 1.75 0.95 0.00 1.36 6.71 2.58 0.00 1.83 2.13 0.98 0.00 2.12 1.18 0.66 2.72 2.61 2.35 0.97 1.32 3.57 1.92 0.00 0.92 0.00 0.29 1.39 0.00 2.07 2.47 0.00 1.44 1.11 0.00 1.11 0.00 0.00 1.46 0.00 2.78 0.00 1.87 2.74 1.47 0.00 0.00 0.00 0.91 0.00 2.22 0.00 K alternative_acceptor tsh,I_chr2L_21836642_21836821 chr2L + chr2L_21836642_21836821 chr2L_21836642_21836816 chr2L_21836542_21836641;chr2L_21836822_21836921 98.48 100.00 100.00 98.33 100.00 95.65 97.73 98.11 98.28 100.00 100.00 100.00 96.55 100.00 100.00 98.41 100.00 97.44 97.06 100.00 96.30 95.65 97.92 100.00 96.15 100.00 96.43 94.44 96.77 100.00 98.21 98.31 97.96 98.33 100.00 100.00 100.00 100.00 100.00 98.31 100.00 98.53 96.55 97.78 97.06 98.95 98.31 97.01 100.00 96.88 100.00 100.00 96.43 100.00 100.00 98.48 100.00 100.00 K alternative_donor CG7414,I_chr3L_21819515_21819581 chr3L + chr3L_21819853_21820193 chr3L_21820136_21820193 chr3L_21820194_21820958;chr3L_21819575_21819852 28.72 27.18 24.60 29.72 23.72 25.54 39.18 30.67 28.46 32.12 32.99 29.14 22.73 24.08 25.00 24.03 25.14 29.17 30.11 25.18 32.14 33.33 20.33 27.08 30.43 27.03 22.48 17.53 27.97 28.69 32.48 35.74 42.77 30.93 31.72 25.91 26.22 24.37 29.53 33.51 39.34 28.76 27.27 29.27 35.93 32.27 23.62 46.61 28.61 24.19 29.04 25.13 30.69 28.92 28.72 27.19 25.05 45.86 K jcn_only_AD Pk61C,CE_chr3L_129889_141769,I_chr3L_132531_133824,I_chr3L_133962_134014 chr3L + chr3L_129889_135457 chr3L_129909_135457 chr3L_135458_135842;chr3L_129840_129888 0.00 2.04 0.00 1.10 3.51 1.79 0.00 1.77 1.27 0.00 0.00 3.26 1.89 0.00 0.00 0.00 0.00 4.00 1.52 0.00 0.00 0.00 1.82 0.00 0.00 0.00 1.56 0.00 6.67 1.23 0.00 0.00 1.35 1.04 1.61 1.96 1.37 0.00 0.00 0.00 3.23 1.49 5.26 1.72 0.00 0.00 0.00 0.90 3.60 NA 0.00 0.00 0.00 0.00 1.47 0.00 NA 1.82 K jcn_only_AD Treh,I_chr2R_16972565_16972702,I_chr2R_16975359_16975442,RI_chr2R_16975359_16975842,I_chr2R_16975364_16975842 chr2R + chr2R_16974443_16975285 chr2R_16974918_16975285 chr2R_16975286_16975358;chr2R_16974405_16974442 73.68 71.43 71.43 78.63 89.71 73.91 88.80 88.71 80.71 80.00 86.00 77.68 91.43 88.33 87.18 83.78 89.09 81.82 78.79 77.09 81.48 59.26 62.50 63.24 71.88 83.33 72.31 91.89 67.65 44.23 81.11 58.93 59.26 75.00 69.23 73.68 64.00 57.41 66.67 54.93 51.61 78.99 85.42 69.74 61.96 48.19 58.93 44.83 79.84 90.32 57.14 76.32 54.35 57.14 75.90 52.50 45.76 37.37 K alternative_acceptor Atg18,I_chr3L_8182683_8182941 chr3L + chr3L_8180294_8180578;chr3L_8180294_8180586 chr3L_8180294_8180540 chr3L_8180118_8180293;chr3L_8180587_8180676 5.88 5.71 7.50 5.17 3.70 6.67 14.63 3.77 4.29 5.88 3.70 6.90 0.00 6.67 4.55 5.26 3.12 6.67 2.86 7.94 2.86 14.47 5.17 6.52 8.11 7.50 8.51 12.50 7.41 2.50 6.00 5.00 1.69 2.22 3.33 25.58 5.00 2.13 6.00 6.90 16.67 5.88 4.00 4.76 7.69 6.06 2.63 7.89 4.76 8.57 6.12 4.35 6.45 6.06 5.88 9.09 4.35 0.00 K multi_cassette Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24348983_24351592 chr3R_24348983_24349501;chr3R_24349697_24349755;chr3R_24349940_24349995;chr3R_24351030_24351592 chr3R_24349502_24349696;chr3R_24349756_24349939;chr3R_24349996_24351029 chr3R_24348417_24348982;chr3R_24351593_24351772 100.00 100.00 NA 40.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 50.00 100.00 NA 50.00 100.00 75.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA NA NA 100.00 NA 100.00 NA 100.00 100.00 100.00 66.67 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA K intron_retention Rrp42,RI_chr2R_11902769_11902844 chr2R + chr2R_11903011_11903064 chr2R_11903010_11903011;chr2R_11903064_11903065 chr2R_11902845_11903010;chr2R_11903065_11903593 0.00 0.00 NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA NA 0.00 11.76 NA NA NA 0.00 NA 3.57 0.00 0.00 NA NA 6.90 4.35 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.68 0.00 0.00 NA 0.00 0.00 0.00 2.50 0.00 0.00 0.00 2.94 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Mipp2 chrX - chrX_5977824_5977886 chrX_5977823_5977824;chrX_5977886_5977887 chrX_5976692_5977823;chrX_5977887_5978087 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 4.55 0.00 0.00 0.00 0.00 NA 0.00 0.00 11.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG2219,I_chr4_199813_199889,RI_chr4_202143_202194 chr4 - chr4_199813_199889;chr4_199822_199889 chr4_199838_199889 chr4_199890_199942;chr4_199758_199812 91.43 96.55 86.67 85.71 100.00 100.00 88.33 93.48 93.22 85.71 93.33 90.00 90.62 89.66 100.00 91.04 84.62 87.50 90.91 90.70 84.62 85.71 94.59 93.10 94.74 83.33 92.31 94.12 92.31 100.00 91.43 92.00 85.71 86.27 90.48 95.00 93.33 89.47 94.12 91.43 83.33 83.33 84.38 95.65 78.57 91.43 100.00 94.74 88.33 87.50 91.89 93.75 100.00 89.47 92.59 95.45 93.55 93.94 K intron_retention CG11267 chr3L + chr3L_13009619_13009686 chr3L_13009618_13009619;chr3L_13009686_13009687 chr3L_13009457_13009618;chr3L_13009687_13010007 0.27 0.44 0.94 1.19 0.00 0.00 0.00 1.48 0.58 0.00 0.00 0.87 0.00 0.00 0.00 1.11 0.00 0.64 0.00 1.08 0.00 0.00 1.03 0.64 0.40 0.00 1.18 3.56 3.50 0.00 0.00 0.61 0.22 0.75 0.00 0.76 0.56 0.00 0.34 0.22 0.00 0.50 0.00 0.00 0.22 0.97 0.00 0.00 0.30 0.41 0.25 0.00 0.30 0.27 1.05 0.65 0.61 0.00 K multi_cassette CG40263,F_chr2RHet_1265687_1293040,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1324541_1335781 chr2RHet_1324541_1333289;chr2RHet_1333469_1335106;chr2RHet_1335333_1335781 chr2RHet_1333290_1333468;chr2RHet_1335107_1335332 chr2RHet_1324446_1324540;chr2RHet_1335782_1335833 7.42 4.35 5.88 6.67 10.53 7.14 2.38 2.78 3.66 NA 81.82 11.76 NA 5.88 6.25 5.26 4.55 14.29 3.45 7.69 27.27 NA 20.00 10.00 NA 0.00 0.00 33.33 33.33 18.18 5.56 NA NA 1.85 10.00 NA NA 10.00 NA 19.05 NA 2.22 0.00 15.00 NA 36.36 0.00 NA 2.50 NA 5.88 8.70 20.00 10.00 8.33 0.00 12.50 42.86 K jcn_only_AA RpS26 chr2L - chr2L_18443071_18443152 chr2L_18443074_18443152 chr2L_18443153_18443237;chr2L_18442505_18443070 1.15 1.00 1.10 1.08 1.20 1.24 1.10 1.00 1.01 1.56 1.04 1.06 1.05 1.04 1.07 1.17 0.97 1.14 1.27 1.18 1.11 1.28 0.99 1.13 1.34 0.98 0.99 1.27 1.59 1.61 1.15 2.22 2.16 1.19 1.40 1.23 1.19 1.12 1.09 1.32 1.87 1.12 1.23 1.18 1.54 1.79 0.97 2.36 1.02 0.99 0.99 1.19 1.19 0.95 1.04 1.09 1.15 2.10 K intron_retention I_chr3R_4807909_4807960,CG11967 chr3R + chr3R_4807890_4807960 chr3R_4807889_4807890;chr3R_4807960_4807961 chr3R_4807823_4807889;chr3R_4807961_4808060 7.69 NA NA NA NA NA NA NA 5.56 NA NA NA NA NA NA 41.18 NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA NA NA NA K cassette lark,noncoding_11093,REI_chr3L_7332718_7333975,RI_chr3L_7334219_7334452 chr3L + chr3L_7332718_7333061 chr3L_7332718_7332967;chr3L_7333009_7333061 chr3L_7332968_7333008 chr3L_7332618_7332717;chr3L_7333062_7333870 23.84 14.29 30.00 NA 6.67 NA NA 30.77 20.83 27.27 NA 29.41 NA 50.00 12.50 NA NA NA NA 45.00 NA 14.29 21.88 13.33 20.00 NA 20.00 NA 26.32 12.00 NA 31.25 25.81 35.29 29.41 10.00 15.38 14.29 11.76 34.38 37.50 32.00 NA NA 21.43 28.57 16.67 50.00 27.78 15.00 30.00 NA 13.04 46.15 NA 19.05 12.00 28.57 K jcn_only_AA RanBPM chr2R + chr2R_6317289_6318384 chr2R_6317289_6318038 chr2R_6317228_6317288;chr2R_6318385_6319420 4.55 7.50 3.77 9.40 3.77 3.77 3.70 4.35 5.74 17.39 2.27 11.46 3.70 2.38 1.43 18.46 5.45 7.69 5.08 9.26 0.00 10.81 2.27 3.45 0.00 4.08 NA 4.55 14.81 NA 4.62 0.00 8.33 4.40 NA NA 3.08 0.00 4.76 16.67 NA 2.88 4.55 7.69 0.00 6.90 6.67 2.38 5.77 3.33 12.82 2.50 8.82 NA 5.71 3.33 20.00 11.11 K intron_retention He,I_chr2L_13975880_13975977 chr2L - chr2L_13972612_13972790 chr2L_13972611_13972612;chr2L_13972790_13972791 chr2L_13972094_13972611;chr2L_13972791_13972964 0.22 0.00 0.46 0.78 0.00 0.51 0.27 0.66 0.34 0.00 0.00 0.41 0.26 0.54 0.23 0.52 0.35 0.15 0.22 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.20 0.00 0.00 0.56 0.53 0.00 0.00 0.00 0.00 0.25 0.00 0.28 0.42 0.29 0.32 0.00 0.39 0.11 0.54 0.38 0.00 0.71 0.00 0.26 0.22 0.00 0.26 0.21 K intron_retention E(bx),I_chr3L_239186_239264,I_chr3L_246324_246699 chr3L - chr3L_235515_235578 chr3L_235514_235515;chr3L_235578_235579 chr3L_235410_235514;chr3L_235579_236074 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 NA 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mu2,I_chr3L_1945382_1945647 chr3L - chr3L_1945592_1945647 chr3L_1945591_1945592;chr3L_1945647_1945648 chr3L_1945437_1945591;chr3L_1945648_1945655 0.00 NA NA 4.00 NA NA 0.00 3.70 2.94 NA NA 0.00 12.50 NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 0.00 NA 4.17 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K alternative_donor kek5,noncoding_24742 chrX + chrX_19247617_19256999 chrX_19247687_19256999 chrX_19257000_19257050;chrX_19247500_19247616 53.34 NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG8334,I_chr3L_19870731_19870822 chr3L + chr3L_19864555_19866860 chr3L_19864554_19864555;chr3L_19866860_19866861 chr3L_19864486_19864554;chr3L_19866861_19867095 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.71 9.52 2.27 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 14.29 0.00 0.00 NA 0.00 2.70 0.00 0.00 0.00 0.00 0.00 5.71 NA 2.00 0.00 5.56 NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA N multi_cassette RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817,snoRNA:Psi28S-2444 chr2R + chr2R_15330246_15330817 chr2R_15330246_15330317;chr2R_15330604_15330664;chr2R_15330745_15330817 chr2R_15330318_15330603;chr2R_15330665_15330744 chr2R_15330177_15330245;chr2R_15330818_15330917 100.00 100.00 NA 30.00 100.00 62.50 100.00 70.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 68.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention TepIV,EI_chr2L_19548696_19549582 chr2L + chr2L_19548696_19549858 chr2L_19548695_19548696;chr2L_19549858_19549859 chr2L_19548596_19548695;chr2L_19549859_19549928 81.06 85.95 90.70 76.17 77.91 79.44 67.16 74.47 78.29 78.87 93.10 87.28 91.67 81.06 83.92 82.17 77.36 92.68 78.15 92.04 84.73 62.16 84.21 78.20 67.90 76.11 73.03 64.18 70.53 73.40 83.93 84.44 83.87 79.82 71.00 72.18 75.81 78.85 83.55 81.69 76.32 80.42 82.35 75.00 91.67 87.23 86.27 84.62 84.97 64.65 72.50 70.27 89.71 85.71 83.11 88.10 82.17 90.74 K intron_retention Lac,I_chr2R_8341560_8351848,RE_chr2R_8341564_8351844,I_chr2R_8348603_8351844 chr2R + chr2R_8341560_8351844 chr2R_8341559_8341560;chr2R_8351844_8351845 chr2R_8341464_8341559;chr2R_8351845_8351944 0.00 0.00 0.00 0.43 0.00 0.62 0.59 0.00 1.52 0.00 0.00 0.77 1.64 0.00 0.00 1.47 0.00 1.43 0.00 0.29 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.65 0.00 0.58 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2364640;chr2L_2361586_2364836;chr2L_2361586_2365060;chr2L_2361586_2364302;chr2L_2361586_2364594;chr2L_2361586_2364312;chr2L_2361586_2364889 chr2L_2361586_2364480 chr2L_2361486_2361585;chr2L_2365061_2365065 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8176,I_chr3R_5348614_5348964 chr3R + chr3R_5352166_5352227 chr3R_5352165_5352166;chr3R_5352227_5352228 chr3R_5351936_5352165;chr3R_5352228_5352964 0.00 0.00 0.68 0.67 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14749 chr2R + chr2R_4517048_4517115 chr2R_4517047_4517048;chr2R_4517115_4517116 chr2R_4515382_4517047;chr2R_4517116_4517691 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 96.88 100.00 100.00 97.06 93.75 100.00 100.00 100.00 92.86 94.44 100.00 100.00 92.86 100.00 100.00 96.30 100.00 100.00 95.45 100.00 92.86 92.86 92.86 100.00 100.00 100.00 93.75 100.00 96.00 100.00 100.00 96.88 100.00 97.22 100.00 95.24 100.00 100.00 96.15 100.00 96.55 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor scu,RhoGAP16F chrX + chrX_17988131_17989117;chrX_17987638_17989117;chrX_17988127_17989117 chrX_17987656_17989117 chrX_17989118_17990486;chrX_17987544_17987637 0.00 20.00 0.00 0.00 0.00 0.00 6.67 0.00 3.45 0.00 0.00 4.76 0.00 0.00 14.29 5.00 7.69 10.00 8.33 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 11.11 0.00 2.86 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 10.00 0.00 K alternative_donor Imp,I_chrX_10699490_10700695,RI_chrX_10699665_10700501,RI_chrX_10699665_10700695 chrX - chrX_10699665_10700501;chrX_10699665_10700695 chrX_10699665_10700474 chrX_10699565_10699664;chrX_10700696_10700795 22.22 40.00 28.57 28.57 NA 33.33 12.00 15.38 13.79 NA 25.00 31.58 20.00 18.18 11.11 12.50 7.14 22.22 42.86 18.18 40.00 NA 40.00 NA NA 42.86 14.29 NA NA NA 0.00 NA NA 26.09 NA NA NA NA NA NA NA 27.27 20.00 NA NA NA NA 40.00 13.04 NA 20.00 NA NA NA 28.57 NA NA NA K jcn_only_AD CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4839561;chr3R_4839215_4839851;chr3R_4839215_4839728;chr3R_4839215_4839889;chr3R_4839215_4839799 chr3R_4839215_4839655 chr3R_4839038_4839214;chr3R_4839890_4839901 0.00 0.00 0.00 3.33 NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA 4.55 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 0.00 K alternative_acceptor CG18811,I_chr3L_18664520_18664589,I_chr3L_18664773_18665233 chr3L - chr3L_18664520_18664589 chr3L_18664535_18664589 chr3L_18664590_18664689;chr3L_18664420_18664519 99.15 100.00 98.25 99.00 100.00 98.28 100.00 100.00 99.07 100.00 97.83 99.14 100.00 100.00 100.00 98.81 97.96 97.73 98.04 99.15 100.00 100.00 98.73 100.00 97.50 100.00 100.00 98.25 98.15 98.11 98.46 100.00 98.73 98.95 97.78 100.00 100.00 100.00 100.00 98.91 98.04 98.21 97.92 100.00 100.00 100.00 97.78 98.86 100.00 97.14 100.00 100.00 100.00 100.00 98.48 100.00 100.00 98.36 K cassette CG41099,R_chr3RHet_1688501_1702556,I_chr3RHet_1688505_1705884,RI_chr3RHet_1703294_1705884 chr3RHet - chr3RHet_1688505_1705901;chr3RHet_1688505_1705884 chr3RHet_1688505_1702560;chr3RHet_1703294_1705884,chr3RHet_1703294_1705901 chr3RHet_1702561_1703293 chr3RHet_1688405_1688504;chr3RHet_1705902_1705984 100.00 100.00 100.00 98.25 100.00 100.00 100.00 98.85 100.00 100.00 100.00 100.00 100.00 97.30 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 K jcn_only_AD eIF-1A,I_chr3R_14106104_14107415,I_chr3R_14106955_14107415 chr3R + chr3R_14106104_14107415;chr3R_14100864_14107415 chr3R_14106955_14107415 chr3R_14107416_14107515;chr3R_14100759_14100863 0.00 0.18 0.16 0.00 0.00 0.00 0.00 0.33 0.00 0.23 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.18 0.00 0.17 0.21 0.00 0.00 0.00 0.00 0.00 0.24 0.18 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.14 0.60 0.17 0.00 0.00 0.39 0.00 0.00 K alternative_acceptor EndoGI,CG4935 chr2L + chr2L_16257766_16258039 chr2L_16257766_16258036 chr2L_16257697_16257765;chr2L_16258040_16258179 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 93.33 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention CG32163 chr3L + chr3L_16580506_16580609 chr3L_16580505_16580506;chr3L_16580609_16580610 chr3L_16580472_16580505;chr3L_16580610_16580996 100.00 100.00 100.00 100.00 92.86 100.00 97.44 96.77 98.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 97.22 100.00 K alternative_acceptor CG2316,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_210055,I_chr4_209875_210628,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_211303,RI_chr4_210688_211927,I_chr4_210688_213991,I_chr4_210688_214019,I_chr4_210688_214049,RI_chr4_210688_214450 chr4 - chr4_209369_210623 chr4_209875_210623 chr4_210624_210636;chr4_209269_209368 100.00 100.00 100.00 98.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 97.22 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.26 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 K intron_retention CG12918,E_chr2R_5938650_5939342 chr2R - chr2R_5939207_5939306 chr2R_5939206_5939207;chr2R_5939306_5939307 chr2R_5939039_5939206;chr2R_5939307_5939769 3.17 2.11 0.00 6.03 0.00 0.00 4.44 3.05 3.07 3.57 4.17 1.18 2.38 2.41 3.51 1.63 1.08 2.53 0.00 2.88 4.82 11.94 2.24 1.38 3.50 1.41 3.92 4.35 10.11 5.26 9.43 5.36 10.64 3.17 3.45 13.33 3.72 2.03 3.49 2.41 10.53 2.62 4.69 2.24 3.61 4.24 3.42 4.08 2.76 4.13 3.23 2.74 2.30 2.45 0.72 1.97 1.32 4.82 K jcn_only_AD CG42533,EI_chr2L_7473200_7473297,RI_chr2L_7473200_7473419,F_chr2L_7476906_7476978 chr2L - chr2L_7473200_7473656;chr2L_7473200_7473770;chr2L_7473200_7473419 chr2L_7473200_7473297 chr2L_7473100_7473199;chr2L_7473771_7473889 37.50 47.06 47.37 48.00 NA 53.57 53.06 56.00 55.68 11.11 66.67 57.14 61.90 82.05 22.22 34.04 46.43 56.00 51.16 34.88 56.52 34.04 25.58 39.39 37.50 38.10 42.86 NA 16.33 51.43 26.56 30.00 22.45 47.37 31.25 14.63 29.41 45.00 37.50 28.77 32.73 35.90 39.39 31.11 21.74 27.63 37.50 20.20 44.44 53.06 47.62 37.50 19.05 39.13 38.46 22.58 30.00 25.24 K intron_retention growl chr3R + chr3R_230362_230422 chr3R_230361_230362;chr3R_230422_230423 chr3R_230191_230361;chr3R_230423_231141 0.12 0.35 0.25 0.26 0.00 0.00 0.21 0.00 0.15 0.00 0.00 0.16 0.00 0.00 0.38 0.11 0.38 0.00 0.28 0.07 0.00 0.10 0.22 0.00 0.38 0.39 1.43 1.62 0.31 0.00 0.12 0.00 0.00 0.00 0.00 0.42 0.27 0.18 0.12 0.32 0.13 0.15 0.19 0.00 0.00 0.41 0.00 0.00 0.29 0.00 0.26 0.41 0.00 0.00 0.24 0.00 0.00 0.00 K cassette capu,I_chr2L_3884519_3902594,I_chr2L_3887896_3888648 chr2L - chr2L_3884519_3893261 chr2L_3884519_3886983;chr2L_3887557_3893261 chr2L_3886984_3887556 chr2L_3884419_3884518;chr2L_3893262_3893604 98.70 98.63 100.00 98.89 100.00 100.00 98.68 100.00 100.00 97.30 98.28 99.15 98.31 100.00 98.59 98.48 100.00 98.44 98.25 99.23 100.00 98.08 99.10 98.99 98.33 96.49 98.91 100.00 98.75 98.75 96.97 97.87 98.94 100.00 98.61 98.73 99.19 98.70 99.12 97.04 100.00 99.21 100.00 98.63 98.11 98.75 98.59 96.49 99.19 98.59 100.00 98.18 98.21 97.87 98.65 98.33 98.44 97.50 K intron_retention CG7145,I_chr3L_21832928_21833150,I_chr3L_21832932_21833106 chr3L - chr3L_21832932_21833198 chr3L_21832931_21832932;chr3L_21833198_21833199 chr3L_21832832_21832931;chr3L_21833199_21833206 78.89 NA NA 81.82 NA NA 90.00 87.50 56.25 NA NA 80.00 NA NA 87.50 63.64 NA NA NA 88.24 NA 60.00 NA NA NA NA NA NA 66.67 77.78 NA 60.00 90.48 NA NA NA NA NA NA 63.16 63.64 90.91 NA NA 88.89 90.91 NA 68.18 63.64 NA 100.00 NA NA NA NA NA NA 76.47 K intron_retention ftz-f1,I_chr3L_18790575_18790636 chr3L - chr3L_18747734_18748233 chr3L_18747733_18747734;chr3L_18748233_18748234 chr3L_18747677_18747733;chr3L_18748234_18748604 3.45 7.69 0.00 7.41 NA 9.09 8.00 5.56 9.80 0.00 NA 0.00 10.53 0.00 21.05 3.23 15.00 0.00 10.53 3.85 NA 2.99 3.92 3.45 0.00 0.00 3.03 0.00 3.57 9.09 3.45 0.00 2.60 8.00 3.45 3.45 0.00 0.00 4.65 1.92 5.71 2.86 5.26 3.85 6.25 2.27 0.00 3.31 7.02 NA 0.00 0.00 0.00 NA 5.71 0.00 NA 0.00 K jcn_only_AD Pvr,I_chr2L_8226604_8228082,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8227151_8227669 chr2L_8227151_8227651 chr2L_8227095_8227150;chr2L_8227670_8227720 67.35 NA 62.86 NA 85.00 65.00 46.67 66.67 62.07 45.83 NA 72.83 NA 80.77 65.52 52.63 53.33 65.71 65.38 69.84 NA NA 67.35 65.62 76.00 52.38 NA NA NA NA 75.44 NA 72.41 69.57 61.90 45.16 67.65 81.82 67.57 69.77 NA 71.70 NA 50.00 NA 77.14 NA 65.00 69.23 NA 68.75 60.87 68.97 NA 77.78 62.50 NA 82.61 K jcn_only_AA Taf6 chr3L + chr3L_19594248_19594309 chr3L_19594248_19594296 chr3L_19594013_19594247;chr3L_19594310_19594484 8.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.41 NA 18.18 NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG7971,I_chr3L_1659363_1659845,I_chr3L_1667736_1667806 chr3L - chr3L_1664787_1664917 chr3L_1664845_1664917 chr3L_1664918_1664986;chr3L_1664532_1664786 100.00 100.00 98.98 100.00 100.00 100.00 100.00 98.98 99.45 100.00 100.00 99.55 98.63 98.28 100.00 100.00 100.00 97.06 100.00 98.49 100.00 98.00 100.00 100.00 100.00 100.00 98.97 98.98 98.46 98.21 98.92 100.00 99.42 99.12 98.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.52 100.00 97.85 98.31 99.47 98.77 99.36 100.00 98.21 100.00 100.00 99.17 99.07 99.46 K alternative_donor NaCP60E,RI_chr2R_20791702_20791803,I_chr2R_20805053_20805170 chr2R + chr2R_20788579_20791803 chr2R_20791702_20791803 chr2R_20791804_20791903;chr2R_20788367_20788578 100.00 100.00 99.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.66 99.81 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Pvr,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8228258_8228493 chr2L_8228257_8228258;chr2L_8228493_8228494 chr2L_8228176_8228257;chr2L_8228494_8229011 4.94 3.07 3.74 6.80 3.23 4.03 3.85 6.38 4.19 5.88 4.14 5.88 5.65 5.95 4.46 5.51 4.52 8.00 4.66 5.28 3.41 5.26 3.43 5.00 5.50 3.59 6.40 4.17 6.25 4.67 5.92 6.56 6.03 4.88 3.31 7.63 3.53 3.75 4.08 5.16 6.12 4.12 5.33 5.63 4.44 4.94 3.80 8.22 5.82 4.04 5.13 5.63 3.28 3.70 4.33 6.32 1.85 6.67 K intron_retention lsn,Cby,CG31431 chr3R + chr3R_17693884_17694036 chr3R_17693883_17693884;chr3R_17694036_17694037 chr3R_17693725_17693883;chr3R_17694037_17694328 95.12 NA NA 92.86 NA 100.00 100.00 94.12 95.24 NA 87.50 92.31 NA NA 100.00 90.91 NA NA NA 91.30 NA 95.45 100.00 90.91 100.00 100.00 93.33 95.45 92.86 91.67 100.00 88.89 100.00 100.00 80.00 NA 92.31 NA 92.86 100.00 80.00 95.65 NA NA NA 90.00 100.00 100.00 95.00 100.00 100.00 100.00 NA NA 91.67 NA 90.91 NA K intron_retention nxf2,I_chr3L_16573041_16573135 chr3L - chr3L_16572692_16572751 chr3L_16572691_16572692;chr3L_16572751_16572752 chr3L_16572236_16572691;chr3L_16572752_16572985 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Thd1,RI_chr4_574364_578068 chr4 - chr4_577984_578068 chr4_577983_577984;chr4_578068_578069 chr4_577874_577983;chr4_578069_578121 6.90 NA NA NA NA NA 4.35 7.14 18.52 NA NA 0.00 NA NA NA 16.67 NA NA NA 5.26 NA NA NA NA NA 15.38 NA NA NA NA NA NA NA 12.50 NA NA NA NA NA 6.67 NA 18.18 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA K jcn_only_AA Sec16,I_chrX_12501913_12502010,I_chrX_12502899_12502973 chrX + chrX_12502899_12502973;chrX_12502899_12502967 chrX_12502899_12502970 chrX_12502799_12502898;chrX_12502974_12503073 8.82 5.77 14.06 10.48 9.76 16.67 9.46 10.64 8.00 12.31 16.22 6.36 7.55 7.55 8.82 7.22 6.06 9.62 13.41 7.44 0.00 9.33 9.09 4.08 6.82 4.35 15.79 7.84 7.89 4.40 8.33 8.75 11.67 11.11 17.02 3.85 5.45 20.00 10.53 10.49 9.30 7.56 5.26 13.70 5.88 7.43 5.41 9.00 9.09 14.29 10.00 8.00 8.57 5.00 13.95 15.25 13.16 6.37 K cassette HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13170581_13178924;chrX_13170581_13179235 chrX_13170581_13176198;chrX_13176263_13179235,chrX_13176263_13178924 chrX_13176199_13176262 chrX_13170481_13170580;chrX_13179236_13179281 96.97 98.41 98.48 96.63 95.74 98.39 90.62 96.38 96.62 96.97 100.00 99.05 96.49 91.43 98.53 95.40 96.83 98.11 95.95 96.61 98.08 94.64 95.45 98.41 97.44 92.19 94.74 100.00 91.84 97.26 94.52 97.14 97.26 99.10 93.22 90.91 98.70 98.18 98.46 98.44 90.48 96.85 98.08 96.97 90.32 96.43 97.78 96.81 97.71 97.67 93.98 95.65 94.59 96.55 97.65 97.14 100.00 97.44 K jcn_only_AA CG2225,Ef2b,I_chr2L_21681559_21681721,I_chr2L_21681559_21682037,I_chr2L_21681559_21737600,I_chr2L_21681561_21682041,I_chr2L_21681805_21682038 chr2L - chr2L_21681559_21682038 chr2L_21681805_21682038 chr2L_21682039_21682137;chr2L_21681461_21681558 0.01 0.00 0.02 0.02 0.00 0.03 0.00 0.00 0.01 0.00 0.00 0.01 0.02 0.02 0.00 0.03 0.00 0.02 0.00 0.01 0.00 0.04 0.01 0.01 0.00 0.00 0.01 0.03 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.01 0.00 0.00 0.01 0.00 0.04 0.05 0.02 0.00 0.03 0.02 0.00 0.02 0.00 0.03 0.00 0.02 0.03 0.02 0.00 0.00 0.00 K intron_retention hppy,I_chr2R_15066378_15066915,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15066304_15067003 chr2R_15066303_15066304;chr2R_15067003_15067004 chr2R_15066297_15066303;chr2R_15067004_15067015 100.00 100.00 100.00 96.67 100.00 100.00 97.14 96.88 95.92 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 91.67 94.44 100.00 92.86 94.74 100.00 100.00 92.31 100.00 100.00 NA 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 92.31 100.00 NA 100.00 100.00 100.00 92.31 100.00 NA 100.00 NA 100.00 97.22 NA 100.00 100.00 100.00 NA 95.00 NA NA 92.86 K jcn_only_AD Cctgamma chr3R + chr3R_12473409_12473557;chr3R_12473318_12473557;chr3R_12473420_12473557;chr3R_12473424_12473557;chr3R_12473464_12473557 chr3R_12473479_12473557 chr3R_12473558_12473651;chr3R_12473311_12473317 3.00 1.53 5.71 2.40 3.96 1.67 1.84 4.95 4.24 6.98 3.00 5.70 1.11 4.59 3.70 1.99 4.46 4.55 2.06 4.11 6.19 0.48 1.29 1.55 1.61 2.78 0.76 0.00 0.00 3.33 4.35 5.00 11.11 3.36 4.35 3.39 0.70 0.00 0.94 0.00 9.09 3.23 3.41 0.00 3.17 7.32 0.00 7.69 6.01 0.88 0.77 0.00 2.94 1.61 3.15 0.00 1.42 3.39 K jcn_only_AD Abi,RI_chr3R_9946195_9946332 chr3R - chr3R_9947835_9948084 chr3R_9947835_9947999 chr3R_9947468_9947834;chr3R_9948085_9948101 99.34 98.68 99.04 100.00 100.00 100.00 100.00 99.34 99.10 100.00 100.00 98.58 100.00 100.00 94.92 99.41 98.90 98.97 98.82 99.38 100.00 100.00 99.39 98.10 100.00 96.39 100.00 97.62 97.81 100.00 98.55 100.00 99.68 99.34 99.11 100.00 99.32 99.13 97.32 99.64 100.00 98.50 98.53 100.00 99.58 100.00 96.00 99.75 98.84 96.09 98.59 94.52 98.35 100.00 98.10 98.77 99.16 99.76 K jcn_only_AA CG5850,I_chr2L_9963013_9963451 chr2L - chr2L_9961615_9961728 chr2L_9961618_9961728 chr2L_9961729_9961775;chr2L_9961359_9961614 72.73 75.23 66.92 66.67 77.19 77.38 73.28 72.48 75.41 78.85 71.59 70.39 72.22 72.29 76.92 75.51 76.92 75.73 70.42 75.78 74.77 64.44 69.91 75.21 72.22 79.10 74.31 63.01 77.78 75.89 67.29 64.21 59.88 78.17 72.73 60.38 70.43 68.75 79.58 72.08 73.17 72.86 74.24 75.58 71.36 68.60 69.57 68.69 73.08 64.71 73.33 64.41 67.59 73.50 79.17 74.29 71.67 72.60 K intron_retention CG16710,CG18754 chr3R + chr3R_19508301_19508491 chr3R_19508300_19508301;chr3R_19508491_19508492 chr3R_19508225_19508300;chr3R_19508492_19509099 0.00 0.00 0.00 8.57 0.00 0.00 0.00 2.44 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K jcn_only_AD CG11771 chr3R + chr3R_20757959_20758015 chr3R_20757963_20758015 chr3R_20758016_20760641;chr3R_20757811_20757958 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 1.79 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.90 2.00 0.00 0.00 1.28 0.00 3.03 0.00 0.00 0.00 2.82 0.00 1.67 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.64 NA 1.15 0.00 0.00 0.00 0.00 3.77 0.00 0.00 1.39 0.00 K cassette shot,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9753001_9753565 chr2R_9753001_9753323;chr2R_9753411_9753565 chr2R_9753324_9753410 chr2R_9752056_9753000;chr2R_9753566_9753631 0.41 0.62 0.65 0.35 0.00 0.00 0.81 0.41 0.21 0.98 0.00 0.33 0.83 0.75 0.63 0.56 0.56 0.00 0.68 0.27 0.00 0.66 0.39 0.50 0.00 0.83 1.05 1.04 0.00 0.00 0.56 0.00 0.73 0.39 0.00 0.93 0.33 0.00 0.00 0.53 0.00 0.70 0.00 0.00 1.50 0.00 1.00 1.23 0.34 0.00 0.00 0.00 0.00 0.93 0.51 0.52 0.49 1.33 K jcn_only_AD RI_chrX_2622435_2622577,CG2712,RI_chrX_2627170_2627263,RI_chrX_2627204_2627246 chrX + chrX_2627170_2627263 chrX_2627204_2627263 chrX_2627264_2627326;chrX_2627104_2627169 71.92 NA NA 73.08 NA NA NA 72.41 75.00 NA NA 70.00 NA NA 80.00 NA NA NA NA 83.87 NA NA 75.00 NA NA NA NA NA 46.43 NA 51.22 51.61 81.25 78.26 NA NA NA NA 78.26 59.09 53.33 69.57 NA 82.61 63.64 67.35 NA 59.62 57.14 NA 71.43 NA NA 60.00 NA 90.91 82.61 76.36 K intron_retention CG8372,RI_chr2L_8212717_8212766,RI_chr2L_8212802_8212867 chr2L - chr2L_8212693_8212766 chr2L_8212692_8212693;chr2L_8212766_8212767 chr2L_8212617_8212692;chr2L_8212767_8212801 45.24 44.74 41.03 57.78 45.45 41.03 37.84 44.44 43.33 33.33 48.28 50.75 52.94 48.15 52.08 52.08 44.00 45.16 56.67 46.91 52.00 33.85 45.45 42.86 64.52 61.29 53.70 65.00 74.14 50.00 34.09 37.50 63.16 40.00 33.33 40.00 43.86 40.54 43.75 46.48 44.83 45.61 46.43 45.24 48.89 36.51 32.79 41.18 47.06 55.00 46.67 35.71 40.35 39.53 54.84 46.81 44.26 37.50 K intron_retention heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27801688_27805244 chr3R_27801687_27801688;chr3R_27805244_27805245 chr3R_27801597_27801687;chr3R_27805245_27805341 7.28 6.67 0.00 0.00 NA NA NA 8.11 16.67 NA 0.00 4.08 NA NA 6.67 13.33 NA 0.00 10.53 7.41 NA NA NA NA NA 7.14 NA NA NA NA 10.53 NA NA 5.88 NA NA NA NA NA 0.00 NA 11.76 NA NA NA 13.33 NA 9.52 8.82 NA NA NA NA NA 0.00 NA NA 12.50 K intron_retention CG34124,CG34125,CG3756 chr2L + chr2L_4965823_4965881 chr2L_4965822_4965823;chr2L_4965881_4965882 chr2L_4965692_4965822;chr2L_4965882_4966400 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 1.09 0.00 0.00 0.00 2.90 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 2.94 0.91 0.00 0.00 0.00 0.00 N intron_retention JhI-26,I_chr2R_12177114_12177266 chr2R + chr2R_12178379_12178432 chr2R_12178378_12178379;chr2R_12178432_12178433 chr2R_12178433_12178520 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG42553,I_chr3L_834336_834491 chr3L + chr3L_834336_834491 chr3L_834336_834391 chr3L_834236_834335;chr3L_834492_834591 96.53 89.47 97.50 100.00 95.45 100.00 99.12 100.00 97.44 84.00 95.00 96.83 100.00 93.10 97.44 98.78 96.30 100.00 100.00 98.11 95.24 88.46 100.00 90.00 96.97 100.00 94.12 97.56 97.06 91.43 92.00 96.30 92.59 98.44 94.44 90.57 100.00 95.83 87.50 91.67 98.28 100.00 96.30 96.00 91.18 97.40 96.77 94.23 100.00 95.83 94.00 90.00 NA 93.55 100.00 93.02 96.88 97.50 K intron_retention CG30090,RI_chr2R_11577574_11577625 chr2R + chr2R_11577570_11577625 chr2R_11577569_11577570;chr2R_11577625_11577626 chr2R_11577474_11577569;chr2R_11577626_11577671 3.74 2.56 5.66 8.33 0.00 0.00 8.82 3.31 4.92 NA 6.52 2.82 5.88 0.00 0.00 4.88 2.27 5.08 9.09 4.35 1.85 7.69 12.50 3.70 7.69 7.14 12.90 NA 11.11 7.14 5.56 0.00 3.23 0.00 0.00 25.00 0.00 0.00 0.00 10.71 13.33 3.74 5.41 0.00 3.03 4.35 0.00 0.00 4.85 5.00 2.70 0.00 2.27 0.00 4.26 0.00 1.19 6.25 K jcn_only_AA dah,I_chrX_15223901_15223968,I_chrX_15232958_15233665 chrX + chrX_15222986_15223051 chrX_15222986_15223042 chrX_15222858_15222985;chrX_15223052_15223900 100.00 100.00 NA NA NA NA NA 92.86 100.00 NA NA 96.67 NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 100.00 NA NA 95.24 NA NA NA 100.00 NA 92.59 100.00 NA NA 100.00 NA 100.00 97.06 NA 100.00 NA NA 95.45 NA 96.77 100.00 93.33 95.83 NA 95.65 NA NA NA NA NA NA K intron_retention CG7849 chr2R + chr2R_1964879_1964927 chr2R_1964878_1964879;chr2R_1964927_1964928 chr2R_1964666_1964878;chr2R_1964928_1965538 0.00 0.00 NA NA NA NA NA NA 9.52 NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA K intron_retention VhaPPA1-1,I_chr3R_10728476_10728933,RI_chr3R_10728613_10728929,I_chr3R_10728645_10728933 chr3R - chr3R_10728613_10728929 chr3R_10728612_10728613;chr3R_10728929_10728930 chr3R_10728545_10728612;chr3R_10728930_10729029 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD yellow-h,CG1674,F_chr4_252231_252560,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_252227_252560;chr4_252254_252560 chr4_251522_252560 chr4_252561_252603;chr4_251483_251521 0.00 NA NA NA NA NA NA 0.00 4.55 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Cctgamma chr3R + chr3R_12473409_12473557;chr3R_12473318_12473557;chr3R_12473479_12473557;chr3R_12473420_12473557;chr3R_12473424_12473557 chr3R_12473464_12473557 chr3R_12473558_12473651;chr3R_12473311_12473317 0.00 0.76 0.00 0.00 0.00 0.00 1.84 0.99 0.00 2.33 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 1.39 0.00 1.04 0.00 0.00 0.87 1.67 0.00 0.00 1.45 0.00 0.00 0.90 0.00 0.00 0.00 0.65 1.14 2.41 1.59 0.00 2.33 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 K jcn_only_AA CG31998,I_chr4_225419_226294 chr4 - chr4_225201_225265 chr4_225219_225265 chr4_225266_225418;chr4_225086_225200 10.00 NA NA 6.52 NA NA 11.90 17.24 10.00 NA NA 13.64 NA 23.08 NA 10.00 NA NA 9.38 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 12.00 NA NA NA NA NA NA NA 5.26 9.52 NA NA NA NA NA 6.12 NA NA NA NA NA 17.39 NA NA NA K jcn_only_AA CG1599,RI_chr2R_5728855_5728907,I_chr2R_5728977_5729044,I_chr2R_5729744_5729805 chr2R - chr2R_5728977_5729044 chr2R_5728981_5729044 chr2R_5729045_5729112;chr2R_5728914_5728976 99.44 99.36 99.19 100.00 100.00 100.00 100.00 99.02 99.23 98.67 100.00 100.00 99.18 100.00 99.44 100.00 98.94 98.58 100.00 99.68 99.20 100.00 98.90 98.66 98.99 100.00 99.41 98.55 100.00 97.98 98.48 100.00 99.07 98.99 100.00 100.00 98.48 97.35 100.00 99.11 98.71 99.61 97.03 100.00 100.00 98.61 99.49 99.27 100.00 100.00 99.39 100.00 100.00 100.00 100.00 100.00 99.39 99.32 K alternative_donor CG13367 chrX + chrX_539947_540022 chrX_539951_540022 chrX_540023_540419;chrX_538794_539946 0.00 0.00 NA 6.25 NA NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 3.23 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 5.56 0.00 0.00 NA 0.00 3.33 NA 0.00 0.00 0.00 K alternative_donor Rab30,I_chr2L_7032178_7032236 chr2L - chr2L_7032178_7032244;chr2L_7032178_7032310;chr2L_7032178_7032321 chr2L_7032178_7032236 chr2L_7032078_7032177;chr2L_7032322_7032336 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 K cassette CG42555 chr2L + chr2L_16896358_16897487 chr2L_16896358_16896808;chr2L_16896905_16897487 chr2L_16896809_16896904 chr2L_16896237_16896357;chr2L_16897488_16898037 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 NA NA 1.75 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 NA 0.00 0.00 0.00 NA 0.00 3.57 0.00 NA 0.00 1.47 3.57 5.56 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K intron_retention mRpS17 chr2R - chr2R_20061719_20061782 chr2R_20061718_20061719;chr2R_20061782_20061783 chr2R_20061187_20061718;chr2R_20061783_20061938 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 5.08 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 K alternative_acceptor Mocs1 chr3L + chr3L_11065511_11065569;chr3L_11065511_11065549 chr3L_11065511_11065661 chr3L_11064659_11065510;chr3L_11065662_11066454 31.58 40.91 27.27 25.81 9.09 27.78 22.86 43.33 32.43 42.86 46.15 27.59 46.15 30.77 38.89 14.81 9.09 17.65 35.00 35.14 53.33 31.82 27.91 33.33 22.22 38.89 40.48 34.48 44.62 21.88 33.33 32.43 14.29 25.00 28.00 45.16 24.00 33.33 28.12 30.00 34.69 26.47 20.00 25.64 37.74 39.53 28.57 36.36 37.50 25.00 34.29 22.22 26.67 26.67 31.58 20.83 35.48 32.14 K jcn_only_AA CG30372,coilin,I_chr2R_4012973_4013037,RI_chr2R_4012976_4013037 chr2R - chr2R_4012976_4013037;chr2R_4012973_4013037 chr2R_4012979_4013037 chr2R_4013038_4013137;chr2R_4012876_4012972 81.93 81.25 73.08 89.19 80.95 77.27 86.36 86.36 85.00 NA 85.00 73.68 78.26 NA 77.27 82.93 75.00 86.36 86.96 82.93 80.95 NA 78.57 95.45 78.26 79.17 83.87 NA NA 84.62 84.09 NA 92.31 86.05 80.00 NA 79.17 NA NA 72.97 95.00 79.59 NA 73.53 76.00 88.10 63.41 NA 92.86 76.00 76.67 82.61 NA NA 84.62 83.33 70.83 90.32 K alternative_acceptor par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,I_chr2R_15350149_15350210,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350149_15350210;chr2R_15350149_15351814 chr2R_15350149_15351846 chr2R_15350068_15350148;chr2R_15351847_15351914 16.67 33.33 33.33 33.33 33.33 33.33 0.00 0.00 0.00 33.33 NA 25.00 33.33 12.50 0.00 9.09 0.00 20.00 16.67 8.33 20.00 0.00 41.67 33.33 20.00 27.27 NA 0.00 20.00 0.00 11.11 NA 33.33 0.00 0.00 0.00 NA NA 66.67 14.29 0.00 9.09 0.00 20.00 NA 50.00 0.00 20.00 7.69 NA 20.00 14.29 NA NA 16.67 NA 25.00 0.00 K jcn_only_AD CG18624,RI_chrX_7787450_7787620,RI_chrX_7787450_7787687,RI_chrX_7787524_7787687 chrX - chrX_7787524_7787782 chrX_7787524_7787620 chrX_7787424_7787523;chrX_7787783_7787787 27.70 12.37 11.86 22.98 11.56 7.65 23.96 20.13 11.68 44.00 10.53 12.77 15.71 14.47 9.23 20.82 11.39 10.43 13.24 8.66 11.76 67.39 28.30 46.67 33.33 25.41 78.57 NA 79.31 55.17 17.19 46.27 58.44 14.52 60.00 71.79 48.39 30.61 40.48 30.38 51.52 9.41 16.46 62.16 21.94 55.74 51.92 52.70 11.27 57.14 46.81 28.12 27.27 61.90 8.82 52.08 34.34 43.04 K intron_retention osa chr3R - chr3R_13519178_13519245 chr3R_13519177_13519178;chr3R_13519245_13519246 chr3R_13514880_13519177;chr3R_13519246_13519327 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rm62,I_chr3R_1827459_1827554,I_chr3R_1828444_1829394,I_chr3R_1828476_1829394 chr3R - chr3R_1827459_1827784 chr3R_1827458_1827459;chr3R_1827784_1827785 chr3R_1827359_1827458;chr3R_1827785_1828820 42.86 41.67 58.33 57.14 58.33 NA 56.25 55.56 52.00 40.91 46.15 36.36 50.00 50.00 53.85 36.84 57.14 45.45 42.86 40.00 41.67 NA 47.06 50.00 41.67 25.00 29.63 40.00 47.06 50.00 35.71 33.33 22.22 54.55 66.67 42.86 26.32 42.86 55.00 50.00 40.00 66.67 40.00 33.33 33.33 40.74 58.33 27.27 46.15 42.86 39.13 30.77 29.17 43.75 NA 44.00 50.00 36.36 K cassette bol,RI_chr3L_9117011_9118271 chr3L - chr3L_9106588_9118266;chr3L_9106588_9118271 chr3L_9106588_9116715;chr3L_9116901_9118266,chr3L_9116901_9118271 chr3L_9116716_9116900 chr3L_9106512_9106587;chr3L_9118272_9118272 100.00 NA NA NA NA NA 100.00 87.50 91.67 NA NA 100.00 NA 100.00 NA 100.00 NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA 71.43 NA NA 100.00 NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA N jcn_only_AA Droj2,RI_chr3R_9207981_9208471,RI_chr3R_9208529_9209185 chr3R + chr3R_9207981_9209956;chr3R_9207981_9208471 chr3R_9207981_9209185 chr3R_9207926_9207980;chr3R_9209957_9210301 97.98 99.30 99.38 81.43 100.00 99.72 97.03 93.36 97.53 99.72 99.40 96.97 96.65 96.73 99.22 98.71 99.67 97.08 97.62 99.54 100.00 97.52 98.20 99.78 93.94 91.43 95.37 96.29 97.06 98.42 99.66 97.18 99.28 97.10 99.80 98.68 96.68 97.36 97.48 98.29 96.74 98.08 99.44 96.25 95.99 97.73 99.57 98.26 97.43 100.00 97.98 99.71 98.26 99.54 97.58 97.87 97.06 98.99 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2390808 chrX_2388671_2389073;chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808 chrX_2389074_2389271;chrX_2389981_2390066;chrX_2390494_2390626 chrX_2388641_2388670;chrX_2390809_2390957 60.00 NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette sw chrX - chrX_20106821_20107156 chrX_20106821_20106877;chrX_20107025_20107156 chrX_20106878_20107024 chrX_20106583_20106820;chrX_20107157_20107424 1.47 1.27 1.28 0.00 1.47 1.72 2.04 1.98 1.47 1.72 1.23 0.95 1.41 1.96 1.11 2.22 1.54 1.49 1.52 1.76 2.53 1.46 1.15 3.77 1.96 2.90 0.00 0.00 0.98 1.25 2.78 0.99 1.18 1.94 0.00 1.19 1.95 2.41 2.35 0.65 1.32 2.00 1.67 1.35 2.34 1.83 0.00 1.52 1.79 1.47 1.37 0.00 3.57 1.72 1.10 2.44 1.10 1.16 K alternative_acceptor RI_chr3L_19994894_19994949,CG7668,RI_chr3L_19995983_19996407 chr3L + chr3L_19996093_19996407 chr3L_19996093_19996402 chr3L_19995858_19996092;chr3L_19996408_19996507 74.45 72.73 63.16 70.00 75.00 76.47 67.44 75.68 73.85 80.00 80.00 80.56 66.67 65.38 84.00 67.44 62.50 76.00 78.57 71.93 88.24 88.89 72.41 84.21 72.73 80.95 77.27 80.00 81.82 89.47 65.71 90.00 76.47 71.79 83.33 76.92 75.00 64.29 66.67 84.62 71.43 78.79 61.11 70.83 75.00 73.91 73.33 61.11 72.73 78.57 89.47 66.67 NA 63.64 69.57 71.43 76.19 70.00 K alternative_donor Pi3K92E,I_chr3R_16459436_16459551,I_chr3R_16459436_16459848 chr3R - chr3R_16459436_16459848;chr3R_16459436_16460340;chr3R_16459436_16460287;chr3R_16459436_16459551 chr3R_16459436_16460267 chr3R_16459336_16459435;chr3R_16460341_16460435 71.43 72.22 73.68 55.26 50.00 71.43 74.07 62.50 71.43 88.89 66.67 65.79 78.95 60.71 63.64 59.46 52.94 57.14 76.19 66.67 69.23 75.00 66.67 93.33 90.91 88.24 68.42 76.92 75.00 60.00 64.00 100.00 64.29 63.33 73.33 63.64 73.68 81.82 75.00 72.97 57.14 78.12 73.33 78.57 100.00 66.67 70.00 80.00 75.00 62.50 66.67 61.11 100.00 100.00 66.67 41.67 72.73 71.43 K jcn_only_AD CG12703 chrX + chrX_19645123_19645380;chrX_19645198_19645380;chrX_19645200_19645380;chrX_19645202_19645380;chrX_19645171_19645380 chrX_19644924_19645380 chrX_19645381_19645579;chrX_19644833_19644923 4.58 5.75 2.92 17.44 2.06 9.41 2.48 12.71 7.25 5.71 2.50 3.86 2.86 6.12 3.17 0.00 6.60 11.43 5.45 6.12 2.73 2.68 8.33 9.80 1.52 2.41 6.03 3.64 0.00 5.92 1.67 1.10 0.32 6.42 5.13 0.87 7.06 3.23 6.45 4.58 0.77 5.78 4.90 3.67 3.70 2.99 9.18 0.47 5.86 0.00 7.20 3.12 3.03 7.58 7.14 7.92 9.80 0.50 K alternative_last_exon CdGAPr,fs(2)ltoPP43,E_chr2L_19794633_19794811 chr2L - chr2L_19793403_19794582 chr2L_19794309_19794582 chr2L_19793224_19793402 chr2L_19793486_19794308 chr2L_19794583_19794632 21.88 20.45 21.43 45.45 18.42 20.00 33.87 37.50 31.11 9.09 35.71 22.39 36.36 35.29 22.50 45.90 32.35 25.00 33.33 23.75 23.33 17.81 21.88 20.00 18.42 17.39 34.78 39.47 17.86 15.28 28.95 13.33 18.28 32.26 22.86 14.00 11.59 14.29 8.47 13.89 16.42 24.36 31.43 13.85 14.63 19.75 19.57 9.82 29.49 32.73 22.81 23.08 14.58 18.18 24.44 18.97 22.86 10.32 N cassette kuz,E_chr2L_13550294_13551106,CE_chr2L_13558833_13594255,I_chr2L_13636762_13637287 chr2L + chr2L_13551667_13609790 chr2L_13551667_13558799;chr2L_13558833_13609790 chr2L_13558800_13558832 chr2L_13551569_13551666;chr2L_13609791_13609888 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 35.29 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA K alternative_donor RpS27,I_chr3R_21072390_21072647,I_chr3R_21072390_21072710,I_chr3R_21072390_21073049 chr3R - chr3R_21072390_21073154 chr3R_21072390_21072710 chr3R_21072290_21072389;chr3R_21073155_21073223 1.03 0.82 0.56 0.26 0.23 0.46 0.75 0.45 0.41 1.67 0.53 0.65 1.00 0.59 0.44 0.82 0.37 0.53 0.42 0.61 0.74 4.14 6.30 2.95 2.85 0.77 8.71 9.69 5.67 4.17 0.69 1.75 2.00 0.46 4.56 6.43 1.03 2.86 1.69 1.73 3.18 0.36 0.46 3.86 0.75 3.57 2.55 1.37 0.80 2.22 10.70 2.11 1.49 17.24 0.52 3.12 1.04 0.75 K intron_retention RpS15Aa,I_chrX_13230413_13230955,I_chrX_13230413_13230960 chrX - chrX_13230413_13231537 chrX_13230412_13230413;chrX_13231537_13231538 chrX_13230313_13230412;chrX_13231538_13231572 0.05 0.05 0.03 0.03 0.04 0.04 0.03 0.04 0.04 0.11 0.02 0.05 0.05 0.03 0.05 0.05 0.06 0.02 0.06 0.03 0.04 0.18 0.13 0.07 0.03 0.03 0.29 1.11 0.14 0.12 0.03 0.04 0.08 0.03 0.25 0.22 0.03 0.03 0.04 0.11 0.21 0.05 0.03 0.07 0.04 0.11 0.07 0.11 0.12 0.10 0.19 0.05 0.15 0.14 0.06 0.06 0.07 0.09 K intron_retention CG8230 chr2R - chr2R_4832756_4832814 chr2R_4832755_4832756;chr2R_4832814_4832815 chr2R_4832633_4832755;chr2R_4832815_4833312 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 2.73 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5284,I_chr3L_16086347_16086804 chr3L + chr3L_16087871_16087928 chr3L_16087870_16087871;chr3L_16087928_16087929 chr3L_16087707_16087870;chr3L_16087929_16088142 0.00 0.00 0.00 3.49 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.97 0.00 0.00 1.34 0.00 0.00 0.00 0.78 0.95 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.26 0.00 1.51 0.00 0.00 3.30 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG18317,RI_chr2L_1718492_1723881 chr2L - chr2L_1718492_1718674;chr2L_1718492_1718739 chr2L_1718492_1718695 chr2L_1718421_1718491;chr2L_1718740_1718903 33.33 44.44 34.43 37.70 29.55 26.09 25.61 36.26 33.86 23.42 27.27 31.78 32.00 16.22 33.96 40.00 28.21 11.36 31.03 45.83 40.91 44.68 36.27 32.31 23.26 26.83 31.18 40.74 34.62 31.43 26.15 50.00 41.67 34.02 41.77 39.44 28.28 28.33 29.60 78.63 36.14 29.06 26.19 40.19 31.68 31.07 36.05 33.80 40.37 47.95 39.29 33.33 31.51 31.75 32.84 39.58 31.15 35.14 K intron_retention tho2 chr2L - chr2L_2137795_2137882 chr2L_2137794_2137795;chr2L_2137882_2137883 chr2L_2137468_2137794;chr2L_2137883_2137926 32.58 35.00 26.32 24.24 50.00 20.00 36.67 28.21 33.33 NA 40.91 26.19 30.00 33.33 21.88 30.77 36.36 22.22 31.82 39.13 40.00 61.11 34.21 27.59 46.67 46.67 19.05 31.58 61.54 25.00 26.32 25.00 24.24 35.48 36.84 52.17 29.03 43.75 39.13 23.33 59.46 35.56 35.71 29.17 20.51 35.71 29.17 48.98 29.27 37.93 28.95 41.67 22.73 24.14 25.93 47.83 22.22 35.71 K intron_retention PMCA,I_chr4_350028_350896,E_chr4_350055_363541,I_chr4_350064_350896,I_chr4_350959_363547,I_chr4_352629_354970,I_chr4_352629_358161,RI_chr4_355160_363547,I_chr4_371836_372509,I_chr4_373671_374568,I_chr4_376108_379519 chr4 - chr4_350966_352023 chr4_350965_350966;chr4_352023_352024 chr4_350897_350965;chr4_352024_352628 84.21 82.61 84.00 97.14 63.64 90.00 100.00 87.72 88.52 NA 58.82 79.07 100.00 80.56 86.36 93.10 85.71 91.67 81.48 82.93 70.59 86.67 78.79 89.66 94.12 64.29 76.67 NA 83.33 73.33 56.00 58.33 NA 93.18 86.96 92.31 NA 63.16 63.64 85.71 91.67 84.91 90.91 73.53 80.00 76.67 73.68 84.21 94.74 80.95 94.29 100.00 90.00 73.68 84.21 73.91 80.77 85.71 K jcn_only_AD CG5484 chr3R + chr3R_22543749_22544049;chr3R_22543734_22544049 chr3R_22543722_22544049 chr3R_22544050_22544588;chr3R_22543570_22543721 98.23 98.39 100.00 99.24 98.90 97.47 99.24 99.36 98.14 97.01 99.20 98.58 98.96 98.53 98.32 93.94 98.94 100.00 98.85 99.47 97.53 98.70 97.16 95.97 94.81 96.10 94.67 97.06 97.53 98.75 98.80 98.04 100.00 97.81 98.39 97.37 96.10 95.87 100.00 96.46 97.14 98.89 98.73 98.23 93.51 92.00 96.46 100.00 97.33 95.70 96.46 98.92 95.65 98.36 96.59 98.37 98.36 95.06 K alternative_acceptor CG3803,RI_chr2R_19840910_19840971 chr2R - chr2R_19840910_19840971 chr2R_19840914_19840971 chr2R_19840972_19841040;chr2R_19840850_19840909 100.00 100.00 90.91 92.31 88.89 87.50 100.00 100.00 95.24 100.00 NA 93.75 100.00 100.00 100.00 100.00 90.00 NA NA 100.00 100.00 100.00 88.89 88.89 NA 100.00 87.50 NA NA NA 91.67 88.89 NA 94.74 NA NA 100.00 100.00 91.67 100.00 100.00 100.00 NA NA 100.00 100.00 90.00 100.00 95.00 NA 100.00 NA NA NA 100.00 100.00 NA 87.50 K intron_retention TMS1 chr3L + chr3L_16407594_16407920 chr3L_16407593_16407594;chr3L_16407920_16407921 chr3L_16407384_16407593;chr3L_16407921_16408056 90.91 100.00 89.47 93.33 85.71 90.32 90.70 88.64 92.16 90.62 88.89 87.23 92.31 96.00 96.15 96.30 91.30 90.48 84.62 87.84 92.86 93.10 96.15 90.48 94.44 92.59 91.67 89.06 93.67 87.50 96.00 90.91 87.50 89.58 90.00 82.76 89.16 91.30 92.98 93.22 88.64 90.38 86.96 93.55 87.50 94.12 93.33 85.00 90.91 90.24 90.91 96.88 96.15 97.06 84.62 92.59 90.00 72.09 K intron_retention Tif-IA chr2L + chr2L_22250315_22250371 chr2L_22250314_22250315;chr2L_22250371_22250372 chr2L_22250120_22250314;chr2L_22250372_22250483 0.00 0.00 0.00 0.00 0.00 1.27 0.99 2.05 0.00 5.71 0.00 0.00 1.09 0.00 0.00 0.00 0.00 1.49 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.97 0.00 0.00 0.00 4.48 0.00 3.17 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 1.72 2.47 0.00 K intron_retention p47,Aldh-III,RE_chr2R_3355332_3355720,I_chr2R_3356541_3356614,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3354556_3354978 chr2R_3354555_3354556;chr2R_3354978_3354979 chr2R_3354549_3354555;chr2R_3354979_3354987 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 92.31 NA 100.00 100.00 NA 100.00 NA NA NA 92.86 NA NA 100.00 88.89 100.00 NA NA NA 100.00 NA 87.50 NA K cassette Hsc70-4,EI_chr3R_11068693_11068772 chr3R + chr3R_11068522_11070081 chr3R_11068522_11068631;chr3R_11068736_11070081 chr3R_11068632_11068735 chr3R_11068453_11068521;chr3R_11070082_11072336 0.06 0.06 0.09 0.00 0.08 0.10 0.08 0.05 0.05 0.13 0.15 0.08 0.06 0.05 0.00 0.07 0.00 0.06 0.09 0.04 0.07 0.02 0.07 0.11 0.14 0.00 0.14 0.18 0.19 0.05 0.07 0.11 0.02 0.06 0.03 0.03 0.08 0.12 0.00 0.15 0.17 0.06 0.06 0.06 0.11 0.12 0.04 0.12 0.06 0.05 0.06 0.05 0.12 0.09 0.00 0.07 0.00 0.05 K intron_retention CG9932,I_chr2L_13031395_13035824 chr2L - chr2L_13028540_13028867 chr2L_13028539_13028540;chr2L_13028867_13028868 chr2L_13027809_13028539;chr2L_13028868_13029642 15.38 21.43 NA 29.41 NA NA 22.22 14.29 10.71 NA NA 15.38 NA 0.00 0.00 13.33 NA NA 28.57 16.67 NA 12.24 11.11 NA NA NA NA 20.00 17.65 14.29 NA NA 18.37 10.53 NA 36.36 8.70 NA 16.67 10.34 NA 10.53 20.00 21.43 15.38 21.43 NA 25.71 8.33 15.38 NA NA NA NA 10.53 NA NA 0.00 K alternative_donor CG18317,RI_chr2L_1718492_1723881 chr2L - chr2L_1718492_1718674;chr2L_1718492_1718739 chr2L_1718492_1718695 chr2L_1718421_1718491;chr2L_1718740_1718903 37.93 47.62 38.46 42.11 34.78 30.30 29.55 41.30 38.24 26.19 33.33 36.62 38.46 22.73 41.18 43.48 30.43 16.67 36.11 49.02 46.43 46.27 38.71 36.17 26.47 33.33 33.33 42.25 37.93 34.48 28.95 50.85 45.24 38.89 42.22 42.00 32.91 32.56 33.77 78.63 39.22 32.43 30.00 42.47 35.94 35.48 40.91 37.06 43.75 51.28 41.18 38.10 35.29 35.29 37.84 41.86 33.33 38.54 K intron_retention jim,I_chr3L_22791582_22791898 chr3L - chr3L_22791579_22791901 chr3L_22791578_22791579;chr3L_22791901_22791902 chr3L_22791482_22791578;chr3L_22791902_22791998 14.29 NA NA 14.29 NA NA NA NA 0.00 NA NA 26.67 NA NA NA NA NA NA NA 9.52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 21.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824086_11824186 chr2R_11824085_11824086;chr2R_11824186_11824187 chr2R_11823989_11824085;chr2R_11824187_11824286 75.00 76.47 NA 71.88 NA NA NA 92.86 85.19 NA NA 70.97 NA 85.71 81.82 60.00 90.00 NA 76.92 79.17 NA 71.43 72.00 60.00 53.33 NA 75.00 58.82 59.09 73.68 60.00 93.75 69.23 76.47 75.00 63.16 73.33 75.00 85.00 81.08 70.00 71.43 NA 58.62 54.55 75.86 72.73 72.00 90.91 87.50 82.35 72.73 84.62 90.91 90.00 71.43 91.67 83.33 K alternative_acceptor CG2219,I_chr4_199813_199889,RI_chr4_202143_202194 chr4 - chr4_199463_199562 chr4_199507_199562 chr4_199563_199629;chr4_199407_199462 86.67 80.00 86.21 87.72 80.95 95.65 96.55 89.66 90.36 100.00 86.21 81.54 88.57 91.30 84.00 83.64 87.50 85.71 86.84 89.09 100.00 90.48 77.50 86.67 86.67 84.21 96.55 94.12 100.00 85.71 79.41 90.00 84.38 88.14 95.24 77.27 76.47 87.50 77.27 97.44 91.67 85.00 77.78 83.67 90.48 83.33 85.71 92.31 83.10 87.88 86.05 84.00 84.62 80.00 91.67 89.66 78.57 84.09 K alternative_acceptor CG4996,E_chr2R_13627553_13627643,I_chr2R_13629549_13629609 chr2R + chr2R_13629549_13629609 chr2R_13629549_13629605 chr2R_13629449_13629548;chr2R_13629610_13629709 93.33 87.50 90.00 100.00 87.50 NA 93.33 87.50 94.74 NA 88.89 91.67 NA NA 100.00 94.12 NA 90.00 100.00 96.30 NA 92.31 92.31 80.00 NA 100.00 90.00 100.00 100.00 88.89 78.57 90.00 91.67 92.31 100.00 100.00 100.00 NA 92.86 100.00 100.00 94.74 80.00 88.89 NA 100.00 NA 100.00 93.75 100.00 100.00 NA NA NA 81.82 NA NA NA K jcn_only_AA Pdp1,RI_chr3L_7809841_7810536,I_chr3L_7813130_7818683,I_chr3L_7831960_7846282 chr3L - chr3L_7809841_7810536;chr3L_7809826_7810536 chr3L_7809712_7810536 chr3L_7810537_7810636;chr3L_7809584_7809711 11.11 8.97 6.35 14.29 11.54 14.52 9.09 11.76 8.55 8.11 24.07 16.67 6.06 10.87 5.36 15.79 5.17 16.13 3.57 11.63 12.50 7.07 11.54 10.10 8.45 12.00 15.93 6.25 10.45 11.84 7.27 13.89 20.00 11.90 18.75 5.41 8.96 8.91 7.81 11.21 2.50 7.53 14.63 6.25 14.93 9.23 17.46 4.12 11.11 4.21 7.94 11.48 31.37 14.06 10.45 12.66 16.05 11.36 K intron_retention l(3)neo26,Cat chr3L + chr3L_18814350_18814406 chr3L_18814349_18814350;chr3L_18814406_18814407 chr3L_18814295_18814349;chr3L_18814407_18815454 14.58 7.22 19.51 44.00 8.57 20.45 28.81 13.04 9.09 9.18 13.56 23.26 14.29 13.16 20.00 27.59 8.16 14.81 14.04 23.33 18.52 23.33 26.73 10.74 26.56 37.50 24.39 30.19 27.59 15.52 11.11 15.38 19.59 12.50 9.88 61.70 7.91 7.89 8.27 11.76 32.93 14.66 18.18 8.99 15.60 16.06 4.50 14.58 16.19 10.08 8.18 12.66 4.55 9.64 13.89 9.43 9.09 14.58 K alternative_donor Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045316_16046104;chr3L_16045277_16046104;chr3L_16045275_16046104 chr3L_16045251_16046104 chr3L_16046105_16046204;chr3L_16045216_16045250 66.67 61.29 60.00 70.27 52.17 70.45 61.54 63.75 62.67 81.82 58.62 67.57 57.78 63.27 77.08 62.50 64.86 46.15 67.24 70.37 70.97 66.67 64.81 58.82 60.71 63.16 65.96 70.00 66.67 77.36 71.70 86.96 73.33 66.67 70.59 51.35 65.38 71.43 53.12 76.56 68.97 63.64 67.44 67.50 86.96 75.76 77.78 79.22 57.89 64.29 64.10 62.50 86.67 NA 55.93 70.83 75.00 91.07 K jcn_only_AD CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4839655;chr3R_4839215_4839561;chr3R_4839215_4839851;chr3R_4839215_4839728;chr3R_4839215_4839799 chr3R_4839215_4839889 chr3R_4839038_4839214;chr3R_4839890_4839901 8.00 0.00 9.09 10.00 NA NA NA 16.67 18.60 NA NA 9.09 NA NA NA NA NA NA 8.00 13.33 NA 0.00 4.76 NA NA 13.64 0.00 NA NA NA NA NA NA 13.64 NA NA NA NA NA 0.00 NA 17.14 NA 5.00 NA 4.55 NA NA 12.82 0.00 NA NA NA NA NA NA 0.00 0.00 K intron_retention myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_716153_716322 chr4_716152_716153;chr4_716322_716323 chr4_716072_716152;chr4_716323_716675 88.89 NA NA 100.00 NA NA 87.50 89.47 78.79 NA NA 81.82 NA 87.50 NA 85.00 87.50 NA NA 90.91 NA NA 87.50 NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA 90.48 NA NA NA NA NA NA 95.00 NA 100.00 88.89 NA NA NA NA NA NA K alternative_donor Rrp42,RI_chr2R_11902769_11902844 chr2R + chr2R_11902769_11902844 chr2R_11902794_11902844 chr2R_11902845_11902944;chr2R_11902669_11902768 100.00 NA 100.00 100.00 100.00 100.00 92.31 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 93.75 92.31 90.00 100.00 100.00 NA 100.00 88.89 90.00 100.00 100.00 91.67 100.00 100.00 100.00 92.31 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 96.00 K intron_retention CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4839561 chr3R_4839214_4839215;chr3R_4839561_4839562 chr3R_4839038_4839214;chr3R_4839562_4839628 20.00 25.00 NA 20.00 NA NA NA 6.67 27.27 NA NA 25.00 NA NA NA 30.77 NA NA NA NA NA 5.00 NA NA NA NA 12.50 NA NA NA NA NA NA 33.33 NA NA NA NA NA 31.25 NA 14.29 NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA 14.29 K intron_retention fdl,RI_chr2R_8394261_8394315 chr2R - chr2R_8376586_8376650 chr2R_8376585_8376586;chr2R_8376650_8376651 chr2R_8376267_8376585;chr2R_8376651_8377386 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N multi_cassette CG1161,RI_chr3R_1181273_1181459,I_chr3R_1182079_1182146 chr3R + chr3R_1181273_1182146 chr3R_1181273_1181515;chr3R_1181665_1181724;chr3R_1181851_1181905;chr3R_1181959_1182146 chr3R_1181516_1181664;chr3R_1181725_1181850;chr3R_1181906_1181958 chr3R_1181173_1181272;chr3R_1182147_1182246 100.00 100.00 100.00 100.00 100.00 100.00 86.44 100.00 92.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.24 100.00 89.86 85.00 86.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 67.11 100.00 100.00 100.00 100.00 100.00 100.00 89.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 K intron_retention SMSr chr3L - chr3L_7368216_7368279 chr3L_7368215_7368216;chr3L_7368279_7368280 chr3L_7367142_7368215;chr3L_7368280_7368446 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ant2,sesB chrX - chrX_10676714_10676809 chrX_10676713_10676714;chrX_10676809_10676810 chrX_10676413_10676713;chrX_10676810_10676873 66.67 NA 66.67 69.23 77.78 NA 72.73 50.00 68.42 NA NA 75.00 71.43 71.43 NA 58.33 NA 33.33 60.00 84.62 NA NA 75.00 50.00 NA 90.00 75.00 NA NA NA 72.73 NA NA 60.00 46.15 66.67 63.64 50.00 64.29 53.33 NA 76.47 66.67 75.00 35.71 81.82 NA 66.67 77.78 NA NA NA NA NA 50.00 58.33 NA NA K intron_retention CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_155591_155927,I_chr4_157014_157316,RI_chr4_157014_157504,I_chr4_157794_157864 chr4 + chr4_154340_155497 chr4_154339_154340;chr4_155497_155498 chr4_154254_154339;chr4_155498_155561 100.00 100.00 100.00 82.61 100.00 90.91 94.29 95.24 100.00 NA 100.00 90.00 100.00 95.24 100.00 100.00 93.33 90.91 96.00 100.00 88.89 NA 93.75 NA NA 100.00 90.91 NA NA 100.00 100.00 NA NA 96.67 100.00 100.00 100.00 NA NA 100.00 NA 93.10 91.30 85.71 NA 100.00 NA NA 97.22 NA 100.00 92.31 NA NA 100.00 NA NA NA K intron_retention CG42600,F_chr2R_5481088_5481893 chr2R - chr2R_5475836_5475895 chr2R_5475835_5475836;chr2R_5475895_5475896 chr2R_5475458_5475835;chr2R_5475896_5476310 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA 80.00 88.89 NA NA NA NA NA NA NA 81.25 NA NA NA NA NA NA NA 42.86 52.94 NA NA NA NA 53.33 53.85 NA 70.00 NA NA NA NA NA NA NA NA NA NA K cassette CG31342,I_chr3R_8813079_8814327,I_chr3R_8822346_8822403 chr3R + chr3R_8813079_8814327 chr3R_8813079_8813154;chr3R_8813207_8814327 chr3R_8813155_8813206 chr3R_8812979_8813078;chr3R_8814328_8814427 97.44 97.67 97.78 100.00 100.00 100.00 94.55 98.25 97.50 91.67 86.67 94.74 100.00 100.00 100.00 97.56 100.00 100.00 97.14 95.29 91.43 88.31 98.33 97.96 94.12 90.32 92.31 97.22 81.82 95.83 97.22 96.30 97.62 98.46 97.44 84.09 98.46 97.62 98.33 97.26 97.44 97.56 96.30 98.25 97.22 100.00 97.30 97.62 98.46 100.00 94.74 100.00 96.15 96.67 100.00 96.67 94.74 92.31 K intron_retention Pros45 chrX + chrX_21187223_21187285 chrX_21187222_21187223;chrX_21187285_21187286 chrX_21187054_21187222;chrX_21187286_21187430 0.78 0.91 0.48 0.38 0.00 0.62 0.78 0.78 0.49 0.00 0.00 1.06 0.00 1.88 0.00 0.97 0.00 0.56 0.00 0.76 0.00 1.24 1.00 2.03 2.68 0.55 3.55 0.00 14.08 0.00 0.72 2.15 0.47 0.72 1.43 1.71 0.44 1.02 0.00 1.49 2.19 1.20 0.00 0.90 1.38 0.60 0.00 1.88 0.90 0.55 0.87 0.00 1.13 1.06 0.84 0.00 1.20 0.83 N jcn_only_AA Nca,CG7646 chr3L + chr3L_19986423_19988473;chr3L_19986423_19987267;chr3L_19986423_19989780 chr3L_19986423_19986483 chr3L_19986365_19986422 0.00 NA 0.00 0.00 NA 0.00 19.57 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9346 chr2R + chr2R_16899784_16899839 chr2R_16899783_16899784;chr2R_16899839_16899840 chr2R_16899667_16899783;chr2R_16899840_16900126 0.00 NA NA 22.22 NA NA 7.14 NA 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 5.56 NA NA NA 0.00 NA NA NA NA NA NA 52.63 NA 7.69 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA N intron_retention I_chrX_4000307_4003527,CG4857 chrX + chrX_4011429_4011996 chrX_4011428_4011429;chrX_4011996_4011997 chrX_4011323_4011428;chrX_4011997_4012308 100.00 100.00 100.00 53.85 NA 100.00 52.63 100.00 54.84 NA NA 100.00 NA 100.00 100.00 100.00 100.00 40.00 100.00 100.00 NA NA 36.00 100.00 NA 100.00 100.00 NA 100.00 57.14 69.23 NA 46.43 100.00 NA 100.00 NA NA 62.50 41.67 NA 59.26 43.75 NA NA 100.00 NA 57.14 40.00 NA 61.11 NA NA NA 47.83 100.00 45.45 NA K intron_retention Dhap-at,CG33494 chr3R - chr3R_21320143_21320838 chr3R_21320142_21320143;chr3R_21320838_21320839 chr3R_21319958_21320142;chr3R_21320839_21320926 0.00 0.00 0.00 0.27 0.00 0.31 0.29 0.38 0.56 0.00 0.00 0.42 0.28 0.00 0.00 0.28 0.82 0.00 0.00 0.36 0.00 0.67 0.00 0.00 0.00 0.00 1.13 1.06 0.27 0.00 0.17 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.18 0.44 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.30 0.31 0.00 K intron_retention phtf,I_chr2R_2629598_2630209 chr2R + chr2R_2632700_2632757 chr2R_2632699_2632700;chr2R_2632757_2632758 chr2R_2632551_2632699;chr2R_2632758_2632826 0.00 0.00 0.00 2.94 0.00 NA 0.00 0.00 0.00 NA 0.00 2.56 NA 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 2.86 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 4.55 0.00 0.00 NA 2.17 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 N intron_retention plx chr3R + chr3R_1532076_1532905 chr3R_1532075_1532076;chr3R_1532905_1532906 chr3R_1532054_1532075;chr3R_1532906_1533663 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.11 NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD HSPC300,I_chr2R_19915648_19915744,I_chr2R_19915648_19915903,I_chr2R_19915648_19916060 chr2R - chr2R_19915648_19915744;chr2R_19915648_19916136 chr2R_19915648_19915903 chr2R_19915548_19915647;chr2R_19916137_19916160 1.45 1.79 0.50 1.74 0.00 0.57 0.00 3.18 2.45 0.99 5.00 3.23 0.00 2.78 1.60 4.48 3.28 0.68 3.53 0.63 2.13 1.43 1.71 1.04 1.85 2.11 0.00 0.00 1.38 1.04 0.00 0.75 0.65 2.49 0.86 0.89 0.00 0.00 1.22 0.90 0.43 1.92 0.86 1.01 2.50 1.45 2.72 2.38 2.56 2.86 3.20 1.79 1.06 3.40 0.45 2.82 2.50 1.90 K intron_retention RpS25,I_chr3R_7041333_7041414,I_chr3R_7041347_7041413,I_chr3R_7041347_7041556,RI_chr3R_7044164_7044221 chr3R - chr3R_7041347_7041556 chr3R_7041346_7041347;chr3R_7041556_7041557 chr3R_7041267_7041346;chr3R_7041557_7041598 99.85 99.81 99.74 99.68 99.83 99.88 99.87 99.76 99.83 99.84 99.85 99.77 99.86 99.77 99.90 99.77 99.82 99.94 99.84 99.81 99.90 98.25 99.84 99.86 99.95 99.68 99.87 99.70 99.83 99.86 99.89 99.91 99.87 99.83 99.86 99.89 99.84 99.85 99.84 99.82 99.93 99.79 99.84 99.95 99.94 99.93 99.80 99.95 99.83 99.43 99.88 99.93 99.94 99.89 99.83 99.88 99.96 99.92 K intron_retention CG5001,I_chr2L_1191535_1191648 chr2L + chr2L_1186453_1191402 chr2L_1186452_1186453;chr2L_1191402_1191403 chr2L_1186350_1186452;chr2L_1191403_1191534 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 1.72 NA 0.00 0.00 NA 0.00 0.00 0.00 5.26 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 3.92 0.00 0.00 NA 0.00 0.00 0.00 2.63 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K jcn_only_AA CG14425,Sxl,CG14425_Sxl,CEF_chrX_6984538_6992033 chrX - chrX_6986204_6991030;chrX_6986156_6991030 chrX_6990969_6991030 chrX_6991031_6991040 62.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD M(2)21AB,I_chr2L_107839_110405,I_chr2L_107957_108587,I_chr2L_110878_111037,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_108227_108587;chr2L_108102_108587;chr2L_107839_108587 chr2L_108347_108587 chr2L_108588_108687;chr2L_107833_107838 14.29 17.26 11.62 14.65 5.73 10.07 10.83 20.00 9.53 16.75 17.88 6.02 7.43 13.64 7.03 10.53 11.64 8.17 13.68 10.60 23.30 7.79 13.39 12.06 17.39 15.89 23.88 18.67 14.76 17.65 11.06 23.08 24.52 11.48 14.95 32.20 8.24 17.32 18.01 18.89 19.15 9.92 15.23 6.15 15.45 12.50 14.29 13.26 7.02 18.05 16.75 9.33 16.43 15.58 7.73 9.57 17.13 18.24 K alternative_acceptor CG4829,I_chrX_16717240_16717547 chrX + chrX_16717240_16717619;chrX_16717240_16717547 chrX_16717240_16717889 chrX_16717140_16717239;chrX_16717890_16718151 1.60 2.28 1.61 0.12 25.66 31.57 2.99 0.75 1.44 8.26 1.09 3.36 1.59 1.54 2.97 0.48 0.92 2.57 1.36 1.56 2.51 0.00 2.39 3.23 3.09 0.28 5.43 9.52 0.40 0.21 1.60 0.22 0.51 0.60 2.01 0.00 1.77 2.23 1.64 2.84 1.67 0.70 1.12 1.05 0.58 2.33 1.89 0.95 1.67 3.93 3.51 1.61 0.83 1.47 0.75 2.21 0.88 0.47 K alternative_acceptor Tm1 chr3R + chr3R_11113877_11113974 chr3R_11113877_11113951 chr3R_11113743_11113876;chr3R_11113975_11115161 87.50 NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Nup75,I_chr2R_14058825_14059758,I_chr2R_14058954_14059942 chr2R - chr2R_14052401_14052459 chr2R_14052400_14052401;chr2R_14052459_14052460 chr2R_14051736_14052400;chr2R_14052460_14052607 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 1.18 0.00 0.00 1.83 0.00 0.00 0.00 2.22 0.00 1.41 0.00 0.55 0.00 8.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 1.72 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Mvl,I_chr3R_16884191_16886355 chr3R - chr3R_16884191_16886003 chr3R_16884190_16884191;chr3R_16886003_16886004 chr3R_16884091_16884190;chr3R_16886004_16886210 9.09 6.45 10.00 6.06 4.35 0.00 4.00 0.00 6.67 13.04 9.09 5.26 13.04 0.00 16.67 4.35 12.50 9.09 0.00 12.20 7.14 11.76 10.53 6.06 5.56 14.29 12.00 20.00 40.00 18.52 0.00 11.11 21.74 12.50 8.70 18.75 0.00 7.41 13.04 12.77 12.50 7.32 0.00 5.56 5.56 20.00 15.00 21.21 9.68 12.50 0.00 0.00 0.00 NA 6.06 NA 15.00 16.67 K intron_retention CG7011 chr3L - chr3L_15155938_15156086 chr3L_15155937_15155938;chr3L_15156086_15156087 chr3L_15155600_15155937;chr3L_15156087_15156438 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 8.33 NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA K intron_retention Mi-2,Su(Tpl) chr3L - chr3L_19890509_19902346 chr3L_19890508_19890509;chr3L_19902346_19902347 chr3L_19890418_19890508;chr3L_19902347_19902410 23.20 30.77 NA 31.25 NA NA 31.82 36.00 23.33 NA NA 21.43 33.33 NA NA 20.00 25.00 NA 18.75 14.29 NA 35.00 8.33 NA NA NA 13.33 23.08 NA NA NA NA NA 17.86 25.00 NA 10.00 NA NA 28.57 NA 26.32 NA 22.22 NA NA NA NA 25.00 NA 21.05 NA NA NA 6.67 NA NA NA N alternative_donor CG8051,I_chrX_19198128_19201351 chrX - chrX_19198128_19199326;chrX_19198128_19201671 chrX_19198128_19199330 chrX_19198028_19198127;chrX_19201672_19201734 0.00 0.00 0.00 8.33 0.00 0.00 6.67 11.11 5.56 0.00 0.00 5.88 0.00 12.50 20.00 0.00 0.00 0.00 10.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 20.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 12.50 0.00 0.00 0.00 0.00 16.67 0.00 0.00 0.00 0.00 0.00 20.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.67 0.00 K jcn_only_AA CG31158,CI_chr3R_18432763_18433113,CG31159 chr3R + chr3R_18433031_18433113 chr3R_18433031_18433110 chr3R_18432919_18433030;chr3R_18433114_18433213 27.59 28.33 27.59 23.46 NA 58.14 26.15 34.44 28.57 20.00 NA 32.88 NA 44.19 42.31 20.83 68.97 41.67 36.36 22.83 NA 29.51 26.03 20.25 18.60 50.00 22.73 32.14 18.18 30.00 37.50 23.64 25.00 37.80 30.00 25.53 20.95 28.33 22.97 27.18 25.53 20.34 41.67 10.00 34.09 27.69 21.21 24.59 33.70 25.58 30.00 23.26 27.59 19.05 40.62 18.75 31.75 33.77 K intron_retention tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5960101 chr3R_5959309_5959310;chr3R_5960101_5960102 chr3R_5958937_5959309;chr3R_5960102_5960121 47.99 50.00 57.14 58.06 NA 66.67 42.59 47.83 40.98 NA 58.33 48.57 31.03 48.15 47.06 50.00 43.75 43.75 52.00 48.48 54.55 30.77 40.91 50.00 NA 46.15 52.94 NA NA NA 50.00 NA NA 43.59 46.67 25.00 70.00 54.55 NA 63.16 NA 47.37 42.86 35.00 NA 46.15 36.36 NA 58.14 41.67 36.36 53.33 NA NA 59.09 NA NA NA K alternative_donor cnc,I_chr3R_19014852_19016738,I_chr3R_19046366_19046507,I_chr3R_19046619_19047567 chr3R - chr3R_19046366_19046507;chr3R_19046366_19047563 chr3R_19046366_19047567 chr3R_19046266_19046365;chr3R_19047568_19047667 45.45 60.00 62.50 45.45 33.33 60.00 40.00 50.00 44.44 66.67 50.00 42.86 66.67 50.00 50.00 44.44 60.00 25.00 25.00 55.56 NA 27.27 45.45 60.00 25.00 75.00 25.00 0.00 42.86 20.00 46.67 50.00 36.36 36.36 50.00 44.44 NA NA 25.00 41.18 66.67 36.84 71.43 50.00 NA 50.00 NA 33.33 57.14 NA 57.14 40.00 NA NA 37.50 33.33 NA 50.00 K jcn_only_AA mask,I_chr3R_20073365_20073461 chr3R + chr3R_20066767_20066839 chr3R_20066767_20066836 chr3R_20065551_20066766;chr3R_20066840_20066876 98.34 99.04 100.00 98.51 100.00 100.00 97.53 97.42 97.89 93.75 100.00 97.69 98.78 99.01 99.35 98.58 96.95 97.50 100.00 98.64 97.98 100.00 97.06 98.35 97.37 98.56 97.89 98.61 96.20 98.53 96.83 96.15 98.50 98.77 94.57 98.92 96.91 99.03 98.33 98.37 100.00 98.03 97.17 99.35 93.88 100.00 97.01 98.25 97.56 NA 95.74 100.00 96.15 96.00 99.41 100.00 96.00 98.11 K jcn_only_AD sar1,I_chr3R_18185148_18185246 chr3R + chr3R_18182472_18183252;chr3R_18182521_18183252;chr3R_18182467_18183252 chr3R_18182490_18183252 chr3R_18183253_18183393;chr3R_18182460_18182466 0.26 0.56 0.57 0.22 0.00 0.00 0.26 0.20 0.69 0.00 0.00 0.82 0.80 0.43 1.42 0.00 1.32 0.37 0.81 0.00 0.00 1.33 0.00 0.00 0.00 0.71 1.04 1.35 1.15 0.00 0.61 0.00 0.00 1.07 1.01 2.02 0.00 1.06 0.55 0.00 0.00 0.19 0.80 0.00 0.56 0.51 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.76 0.00 1.76 1.52 K jcn_only_AD CG17721,RI_chr3R_7061265_7061322 chr3R + chr3R_7061229_7061322 chr3R_7061265_7061322 chr3R_7061323_7061422;chr3R_7061165_7061228 13.79 13.79 19.23 11.36 10.00 6.06 7.14 28.21 23.53 18.57 13.33 14.04 6.67 18.18 11.90 9.38 7.14 24.00 16.00 16.00 21.62 13.51 2.70 8.64 4.44 0.00 5.41 7.69 18.60 18.75 4.65 16.67 NA 9.52 NA 18.60 7.04 24.53 24.59 11.29 13.79 14.29 11.43 22.45 16.28 19.05 22.00 23.08 12.20 16.00 15.38 12.50 8.33 14.81 10.00 13.33 11.49 21.95 K intron_retention CG32582,I_chrX_15730402_15730457 chrX + chrX_15730431_15730557 chrX_15730430_15730431;chrX_15730557_15730558 chrX_15730315_15730430;chrX_15730558_15730707 41.67 45.45 61.54 73.68 NA NA 76.19 60.00 60.71 NA 42.86 65.00 54.55 41.67 42.86 52.00 46.67 38.46 52.63 50.00 NA NA 33.33 40.00 NA NA 33.33 NA 45.45 NA 53.33 27.27 NA 48.28 36.36 58.33 37.50 42.86 NA 28.57 41.67 39.29 64.29 13.64 35.71 36.84 27.27 NA 37.50 41.18 42.86 35.71 21.43 18.75 50.00 30.00 25.93 23.08 K jcn_only_AA mnb chrX - chrX_17762200_17763014;chrX_17762403_17763014 chrX_17762203_17763014 chrX_17763015_17763849;chrX_17762180_17762199 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA SRPK chr2R + chr2R_11269919_11270907 chr2R_11269919_11270707 chr2R_11269355_11269918 0.00 0.00 1.27 0.00 0.00 0.00 1.33 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 3.90 0.00 0.00 0.00 1.39 2.53 1.22 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 2.44 0.00 3.70 0.00 0.00 2.04 0.00 K cassette Zasp52,RI_chr2R_11667164_11667562,I_chr2R_11690993_11701987 chr2R - chr2R_11666052_11667562 chr2R_11666052_11666769;chr2R_11667164_11667562 chr2R_11666770_11667163 chr2R_11665857_11666051;chr2R_11667563_11667662 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.99 0.00 0.00 0.00 3.16 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG5514,RI_chr3R_23768206_23768306,Gp93 chr3R + chr3R_23768206_23768309 chr3R_23768206_23768306 chr3R_23768160_23768205;chr3R_23768310_23768406 90.91 NA NA NA NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA NA 66.67 NA NA NA NA NA 100.00 NA NA NA NA 100.00 90.00 NA 88.89 87.50 100.00 NA NA 85.71 88.89 NA NA NA NA 81.25 90.91 NA 100.00 90.91 100.00 NA NA NA 100.00 NA NA NA NA K intron_retention cryptocephal,noncoding_4181,I_chr2L_21311307_21311752,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21311033_21311192 chr2L_21311032_21311033;chr2L_21311192_21311193 chr2L_21310948_21311032;chr2L_21311193_21311214 35.71 30.85 35.00 40.00 35.71 31.82 34.69 24.12 28.44 45.00 27.16 35.07 38.78 35.79 37.80 30.11 27.63 33.57 33.64 31.10 35.00 63.64 44.83 34.17 38.71 38.33 67.90 81.60 69.04 48.25 31.29 54.67 58.54 30.13 40.66 38.16 48.19 27.17 40.98 57.14 71.83 31.44 32.38 43.96 49.32 46.20 31.45 62.50 33.85 43.43 30.66 25.64 32.61 31.11 29.75 33.33 41.11 65.18 K intron_retention CG32103,I_chr3L_12398261_12403200 chr3L - chr3L_12397391_12397462 chr3L_12397390_12397391;chr3L_12397462_12397463 chr3L_12396872_12397390;chr3L_12397463_12398036 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.54 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11177 chrX + chrX_13506235_13506293 chrX_13506234_13506235;chrX_13506293_13506294 chrX_13506141_13506234;chrX_13506294_13506746 0.00 0.00 0.00 0.00 0.00 1.00 0.55 0.00 0.25 0.00 0.00 0.56 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Trn chr3L + chr3L_6189812_6190482 chr3L_6189812_6190136;chr3L_6190213_6190482 chr3L_6190137_6190212 chr3L_6189716_6189811;chr3L_6190483_6190657 100.00 100.00 100.00 100.00 100.00 100.00 98.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG4877 chr3L + chr3L_16379671_16379731 chr3L_16379671_16379725 chr3L_16379625_16379670;chr3L_16379732_16380052 60.00 NA 69.57 NA NA NA 60.00 NA 80.00 NA NA 60.00 NA NA 45.00 87.50 NA 63.64 61.90 64.29 NA NA 55.56 50.00 NA NA NA 60.00 54.55 56.52 NA NA NA 81.82 NA NA 47.62 NA NA 60.00 NA 56.25 NA 46.34 NA NA NA 61.29 48.15 NA 60.00 45.45 NA NA NA NA NA NA K jcn_only_AD Fas1,E_chr3R_12458491_12460799,I_chr3R_12458491_12460807,I_chr3R_12460976_12461267 chr3R + chr3R_12458491_12461267;chr3R_12460817_12461267 chr3R_12460105_12461267 chr3R_12461268_12461367 0.00 NA 9.52 NA 0.00 NA NA NA 2.94 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention CG2950,I_chr2L_4842348_4842805,I_chr2L_4844647_4845086,I_chr2L_4844952_4845086 chr2L - chr2L_4842348_4843539 chr2L_4842347_4842348;chr2L_4843539_4843540 chr2L_4842248_4842347;chr2L_4843540_4843658 18.27 22.22 17.74 11.22 11.36 11.11 19.35 24.68 13.68 16.67 14.52 23.58 34.21 31.71 16.67 24.00 12.50 24.44 21.15 8.80 11.76 46.67 18.52 21.43 37.04 27.91 22.22 43.18 24.07 16.39 6.78 14.29 24.59 17.14 23.40 16.22 18.27 16.95 19.57 22.22 22.03 13.33 16.67 11.11 20.41 20.27 18.99 24.32 15.96 14.86 24.73 20.93 7.27 12.50 15.49 12.20 13.48 15.52 K intron_retention noncoding_20813 chr4 + chr4_927674_927740 chr4_927673_927674;chr4_927740_927741 chr4_927671_927673;chr4_927741_927770 82.61 77.78 73.33 84.00 63.64 75.00 89.58 68.42 82.61 91.30 75.00 78.79 43.75 68.18 68.42 72.00 53.33 52.94 83.33 66.67 60.00 98.91 83.78 86.21 91.67 90.00 100.00 97.14 100.00 87.88 80.49 75.00 92.59 69.44 83.33 96.55 96.97 94.12 92.59 88.14 100.00 72.73 78.57 90.00 94.44 82.14 95.45 97.78 62.16 87.88 88.24 96.00 60.00 72.00 64.00 75.00 76.00 72.00 K alternative_donor Ilp6,RI_chrX_2226173_2226308,I_chrX_2226173_2226571 chrX - chrX_2226173_2226376;chrX_2226173_2226571;chrX_2226173_2226308 chrX_2226173_2227352 chrX_2226073_2226172;chrX_2227353_2227719 100.00 100.00 97.30 100.00 100.00 100.00 95.89 99.02 99.32 100.00 97.44 97.56 100.00 100.00 100.00 98.88 100.00 97.87 100.00 98.96 100.00 93.75 98.84 98.18 100.00 97.78 100.00 95.00 92.86 100.00 100.00 100.00 97.87 98.86 97.44 100.00 100.00 100.00 100.00 95.45 100.00 99.17 100.00 100.00 100.00 100.00 100.00 100.00 98.20 96.83 98.72 100.00 100.00 100.00 98.51 100.00 98.75 100.00 K jcn_only_AA CG6805 chr2R + chr2R_12894564_12894770 chr2R_12894564_12894637 chr2R_12894294_12894563;chr2R_12894771_12895109 100.00 NA NA NA NA 100.00 NA 100.00 97.96 NA NA 100.00 100.00 NA 100.00 NA NA NA NA 100.00 100.00 NA NA 100.00 NA NA 95.00 NA NA NA NA NA NA 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 NA 90.91 NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA 91.67 100.00 NA NA K jcn_only_AD lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3955872_3957375;chr2R_3955586_3957375;chr2R_3955788_3957375 chr2R_3955517_3957375 chr2R_3957376_3957784;chr2R_3955509_3955516 94.74 94.87 95.06 96.43 98.72 100.00 94.29 96.84 98.02 90.48 98.77 96.12 98.63 94.74 96.30 95.59 92.50 98.65 93.15 93.62 93.75 89.19 NA NA NA 97.37 NA NA 85.19 91.67 89.47 95.83 93.33 96.03 88.00 NA 80.00 NA NA 86.57 80.00 94.94 98.55 81.82 96.88 NA NA 91.43 94.69 NA NA NA 92.11 NA 97.32 NA NA 92.31 N intron_retention Cp1,Aats-phe chr2R + chr2R_9853191_9854259 chr2R_9853190_9853191;chr2R_9854259_9854260 chr2R_9853110_9853190;chr2R_9854260_9854474 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 77.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD osa,I_chr3R_13542657_13542834,I_chr3R_13542657_13543500,I_chr3R_13542657_13543662,I_chr3R_13542657_13543668,I_chr3R_13543730_13543786 chr3R - chr3R_13542657_13543968;chr3R_13542657_13543500;chr3R_13542657_13542834;chr3R_13542657_13543668;chr3R_13542657_13543677 chr3R_13542657_13543662 chr3R_13542557_13542656;chr3R_13543969_13544017 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 1.47 0.00 0.00 0.83 0.00 2.25 0.94 0.00 0.00 0.00 0.50 0.00 0.00 0.56 0.00 0.00 1.37 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.55 2.82 0.00 0.00 1.25 0.00 0.00 0.00 2.40 0.00 0.00 2.56 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 K alternative_acceptor Dyrk3,I_chr4_1231226_1233305,I_chr4_1233845_1234170 chr4 - chr4_1230568_1230624 chr4_1230573_1230624 chr4_1230625_1231068;chr4_1230231_1230567 92.45 85.71 95.00 97.37 92.31 100.00 93.75 92.59 86.49 NA 94.12 100.00 88.24 90.91 93.33 100.00 90.91 85.71 95.00 93.55 88.89 100.00 95.45 92.31 100.00 81.25 100.00 100.00 92.31 100.00 90.00 100.00 90.00 91.43 100.00 90.91 90.91 100.00 84.62 96.00 90.00 90.32 100.00 93.33 92.31 85.71 93.33 100.00 91.43 100.00 85.71 92.31 88.89 90.00 85.19 100.00 93.75 84.62 K jcn_only_AA Trap1 chr2R - chr2R_2521435_2521515;chr2R_2521438_2521515 chr2R_2521454_2521515 chr2R_2521516_2521564;chr2R_2521152_2521434 100.00 100.00 100.00 100.00 98.89 97.53 100.00 99.40 98.85 100.00 100.00 100.00 100.00 100.00 100.00 98.90 97.26 97.89 100.00 99.41 96.67 100.00 100.00 100.00 98.08 100.00 100.00 100.00 98.46 100.00 98.68 100.00 99.13 98.58 100.00 100.00 100.00 98.94 99.19 100.00 100.00 100.00 100.00 98.88 99.12 100.00 99.24 100.00 99.52 100.00 99.30 100.00 99.21 100.00 98.95 99.24 100.00 100.00 K intron_retention Got2 chr2L - chr2L_1986106_1987584 chr2L_1986105_1986106;chr2L_1987584_1987585 chr2L_1985946_1986105;chr2L_1987585_1987761 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 1.20 0.75 0.00 0.00 0.00 0.00 0.00 2.05 0.00 0.00 0.00 0.47 0.00 0.00 0.54 0.69 0.87 0.80 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.86 1.16 0.42 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.50 K jcn_only_AA RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522912_523360;chrX_522932_523360 chrX_522949_523360 chrX_523361_523436;chrX_522849_522911 2.28 1.98 1.77 1.30 2.38 2.27 17.10 3.21 2.05 2.13 5.56 1.28 5.36 2.70 2.17 2.08 4.38 5.71 5.65 2.36 4.14 4.17 2.11 2.19 5.16 32.24 1.90 4.32 1.90 5.86 3.60 3.64 2.06 2.62 3.19 2.87 1.96 0.90 2.00 2.15 7.55 2.94 5.37 0.58 1.94 3.23 1.57 1.59 3.30 1.06 1.32 2.41 0.80 1.60 2.51 1.19 2.28 1.60 K intron_retention opa1-like,I_chr2R_10119470_10120234,I_chr2R_10121848_10121900,I_chr2R_10122128_10122197,I_chr2R_10122334_10122393 chr2R - chr2R_10119470_10120220 chr2R_10119469_10119470;chr2R_10120220_10120221 chr2R_10119370_10119469;chr2R_10120221_10120227 8.51 6.98 6.90 6.49 7.69 11.43 6.06 8.47 9.09 26.32 7.50 11.11 20.83 5.88 8.33 8.33 11.54 5.88 13.16 10.45 0.00 10.42 13.46 10.64 2.94 0.00 4.84 12.50 8.89 16.67 4.88 19.23 12.90 14.00 16.00 2.44 6.67 8.51 6.78 11.69 5.00 7.46 18.18 8.89 0.00 7.14 8.89 20.00 14.55 8.00 19.15 5.71 16.67 5.71 5.41 6.12 10.42 17.65 K intron_retention CG10011 chr3R - chr3R_24436242_24436323 chr3R_24436241_24436242;chr3R_24436323_24436324 chr3R_24435931_24436241;chr3R_24436324_24441888 0.00 0.00 NA 3.57 5.56 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 4.35 0.00 0.00 5.56 8.33 0.00 0.00 0.00 0.00 0.00 NA 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 NA 4.44 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 K jcn_only_AD skap,I_chr3R_4766829_4767129,CRE_chr3R_4766916_4767129 chr3R + chr3R_4766912_4767129 chr3R_4767039_4767129 chr3R_4767130_4767229;chr3R_4766816_4766911 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.26 0.00 0.00 0.00 0.21 0.00 0.49 0.00 0.29 0.00 0.88 0.00 0.32 0.00 0.00 0.00 0.37 0.40 0.70 0.62 2.54 0.36 0.00 0.00 0.00 0.42 0.56 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.47 0.00 0.42 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.55 0.00 0.47 0.70 0.36 0.34 0.00 N jcn_only_AA CG32138 chr3L + chr3L_14058259_14059498;chr3L_14058259_14058715 chr3L_14058259_14058688 chr3L_14058172_14058258;chr3L_14059499_14060368 5.20 3.42 1.52 6.44 3.24 4.42 3.46 4.03 5.12 5.61 1.57 5.07 9.40 3.50 2.11 4.91 4.00 2.92 5.53 2.81 4.94 12.92 7.69 5.65 7.87 5.65 7.75 11.11 11.11 8.27 4.64 5.13 9.24 2.95 7.96 19.65 5.66 7.77 7.93 6.55 5.61 3.45 4.90 5.05 6.67 6.13 8.02 5.60 2.62 13.07 5.20 5.88 1.18 3.60 4.03 9.88 3.76 3.66 K intron_retention mfas,I_chr3R_7811954_7812017,RI_chr3R_7818607_7818970 chr3R - chr3R_7815051_7818463 chr3R_7815050_7815051;chr3R_7818463_7818464 chr3R_7814932_7815050;chr3R_7818464_7818574 88.97 88.97 87.14 81.18 93.44 89.86 94.44 89.01 89.23 89.55 89.33 95.12 94.03 92.31 95.56 90.00 93.55 96.55 89.39 84.21 86.25 93.42 82.99 75.56 91.25 97.44 85.09 87.76 87.50 90.11 93.65 85.00 76.25 89.52 83.95 93.67 87.30 90.35 86.08 85.52 81.63 89.45 93.85 87.96 82.47 78.85 84.13 75.00 83.62 89.52 81.34 85.45 73.68 79.73 95.33 86.14 89.29 67.65 K intron_retention I_chr3R_25875159_25875219,CG7946,CG15526 chr3R + chr3R_25880069_25880131 chr3R_25880068_25880069;chr3R_25880131_25880132 chr3R_25879266_25880068;chr3R_25880132_25880201 0.00 0.00 0.00 6.67 0.00 3.03 0.00 4.17 1.37 0.00 0.00 4.62 0.00 0.00 0.00 2.82 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 4.26 4.92 0.00 17.39 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 5.41 2.00 4.92 3.61 3.33 0.00 0.00 2.90 0.00 3.45 2.60 0.00 0.00 0.00 0.00 2.04 0.00 0.00 1.59 0.00 K intron_retention hppy,I_chr2R_15066378_15066915,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15066378_15067003 chr2R_15066377_15066378;chr2R_15067003_15067004 chr2R_15066360_15066377;chr2R_15067004_15067015 41.18 35.29 46.15 60.71 NA 41.18 61.54 69.57 56.25 63.64 NA 48.15 60.00 53.85 37.50 42.86 41.18 58.33 36.36 32.43 66.67 28.26 39.39 47.06 35.29 33.33 52.38 33.33 23.08 47.83 47.06 NA 46.15 59.26 42.11 25.00 50.00 39.13 NA 30.23 NA 47.83 53.85 16.36 NA 29.41 25.00 19.35 43.18 58.33 40.00 29.41 23.08 NA 36.84 40.00 NA 30.77 K alternative_donor Elf,I_chr2L_12437061_12437812 chr2L + chr2L_12436928_12437812 chr2L_12436979_12437812 chr2L_12437813_12437912;chr2L_12436859_12436927 100.00 NA NA NA NA NA NA NA 100.00 NA NA 85.71 NA NA NA 100.00 NA NA NA NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA K alternative_donor CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27044867;chr3R_27044771_27045188;chr3R_27044771_27045132;chr3R_27044771_27045027;chr3R_27044771_27045110;chr3R_27044771_27044831;chr3R_27044771_27044990;chr3R_27044771_27044895 chr3R_27044771_27045257 chr3R_27044671_27044770;chr3R_27045258_27045273 98.65 99.10 98.54 99.34 100.00 99.25 98.58 99.67 98.84 95.71 99.18 98.70 98.97 99.03 99.32 98.56 99.62 99.16 99.06 98.61 99.35 98.88 88.89 83.87 92.31 98.87 80.95 91.07 93.66 95.96 99.09 99.10 98.42 99.21 94.23 96.43 90.48 87.50 91.43 97.55 96.88 99.35 99.27 96.15 98.82 98.70 84.62 98.90 99.08 84.00 85.71 91.67 98.65 87.50 99.48 80.56 92.45 99.17 K jcn_only_AA pr,I_chr2L_20074851_20075383 chr2L - chr2L_20074851_20075383 chr2L_20075320_20075383 chr2L_20075384_20075483 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA NA NA NA NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA 100.00 100.00 NA NA NA 100.00 NA 100.00 NA NA 100.00 K intron_retention Pk92B chr3R + chr3R_15705766_15705837 chr3R_15705765_15705766;chr3R_15705837_15705838 chr3R_15705421_15705765;chr3R_15705838_15706032 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 5.71 1.52 0.00 0.00 0.00 9.76 6.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 K alternative_donor noncoding_18164,F_chr3R_17192061_17200781,RI_chr3R_17193489_17193631 chr3R + chr3R_17193489_17193631;chr3R_17193407_17193631 chr3R_17193416_17193631 chr3R_17193632_17193731;chr3R_17193389_17193406 70.00 66.67 58.82 59.26 71.43 64.29 62.50 61.90 65.00 NA NA 69.23 64.29 60.00 66.67 73.91 71.43 70.00 71.43 66.67 63.64 NA 80.00 70.00 NA 76.92 62.50 85.71 71.43 NA 68.42 75.00 83.33 61.90 70.00 50.00 87.50 42.86 81.82 52.00 76.92 73.08 75.00 69.23 66.67 66.67 72.73 75.00 80.77 83.33 71.43 66.67 85.71 70.00 73.33 81.25 66.67 80.77 K intron_retention CG1109,CG1347 chr3R + chr3R_1489375_1489439 chr3R_1489374_1489375;chr3R_1489439_1489440 chr3R_1489141_1489374;chr3R_1489440_1489651 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 NA 0.00 0.00 0.00 6.45 0.00 2.70 3.12 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Aldh-III,I_chr2R_3356541_3356614,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3355332_3356864 chr2R_3355332_3355926;chr2R_3356043_3356864 chr2R_3355927_3356042 chr2R_3355296_3355331;chr2R_3356865_3357018 97.92 97.40 96.30 96.51 100.00 98.41 100.00 97.59 98.65 79.17 100.00 99.21 94.87 98.41 98.75 98.82 100.00 100.00 96.55 99.35 98.36 95.83 97.62 96.67 100.00 97.62 96.92 95.24 96.00 97.50 95.40 98.00 97.67 100.00 97.92 97.62 96.55 97.10 97.98 95.06 97.06 98.57 98.08 100.00 98.33 95.56 98.06 94.00 99.12 97.50 97.87 96.00 98.18 97.10 100.00 98.88 98.94 97.92 K intron_retention CG2034 chr3L + chr3L_2258518_2258579 chr3L_2258517_2258518;chr3L_2258579_2258580 chr3L_2257872_2258517;chr3L_2258580_2258934 0.00 0.00 0.00 2.75 1.32 2.44 0.00 0.00 1.26 0.00 0.00 1.38 0.00 0.00 0.00 0.00 0.00 0.00 1.41 3.06 0.00 4.82 0.00 0.00 0.00 0.00 0.85 5.41 16.46 0.00 0.00 1.15 0.00 0.00 0.00 1.94 0.00 0.90 0.53 0.76 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 1.43 0.00 0.87 0.00 0.68 0.00 0.00 0.00 0.48 0.00 K alternative_donor l(2)08717 chr2R - chr2R_14686769_14689522 chr2R_14686769_14687299 chr2R_14686578_14686768;chr2R_14689523_14689898 3.23 3.45 2.56 0.00 0.00 3.85 2.56 1.27 3.51 3.45 2.70 5.26 4.55 3.12 2.78 2.94 4.35 3.33 3.23 1.19 3.33 5.88 2.38 3.23 3.57 2.56 5.26 9.09 6.38 3.45 3.45 4.76 3.03 1.56 3.45 5.26 2.13 4.17 2.38 1.69 2.70 1.47 3.45 2.56 3.23 2.50 2.27 3.64 3.77 3.23 5.00 0.00 2.78 0.00 2.50 3.57 0.00 2.27 K jcn_only_AD crol,I_chr2L_11799403_11802904 chr2L - chr2L_11800323_11802904;chr2L_11800323_11802370;chr2L_11800323_11802286 chr2L_11800323_11802343 chr2L_11800155_11800322;chr2L_11802905_11803004 0.00 0.37 0.00 0.25 0.00 0.00 0.00 0.00 0.30 0.54 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.19 0.00 0.31 0.41 0.00 0.30 0.39 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.17 0.00 0.00 0.00 1.23 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14995,I_chr3L_4095875_4097205,I_chr3L_4096047_4096903 chr3L - chr3L_4096979_4097205 chr3L_4096978_4096979;chr3L_4097205_4097206 chr3L_4096971_4096978;chr3L_4097206_4097305 12.50 13.33 NA NA NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA 12.50 NA 15.79 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.09 NA 27.27 NA 13.33 7.14 NA NA NA NA 12.50 0.00 NA NA NA NA NA NA NA K intron_retention cav chr3R + chr3R_20047648_20048064 chr3R_20047647_20047648;chr3R_20048064_20048065 chr3R_20047531_20047647;chr3R_20048065_20048196 100.00 NA 100.00 100.00 100.00 NA 94.74 100.00 96.43 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA NA NA NA 100.00 100.00 100.00 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA 100.00 K jcn_only_AD Myb,RI_chrX_15752571_15753225 chrX - chrX_15751579_15751673;chrX_15751579_15751682;chrX_15751579_15751749 chrX_15751579_15751709 chrX_15749823_15751578;chrX_15751750_15751876 0.96 1.92 0.00 2.99 3.77 2.17 2.99 0.99 0.00 0.00 2.56 0.00 0.00 1.37 1.52 0.66 2.63 2.22 0.00 3.28 6.25 0.00 0.00 0.00 0.00 2.27 0.00 4.76 3.03 1.79 0.00 2.04 1.41 0.93 2.27 0.00 1.43 2.78 0.00 0.00 2.78 2.17 0.00 0.00 2.08 0.00 0.00 0.00 1.44 NA 0.00 0.00 2.78 4.55 0.00 0.00 0.00 0.87 K alternative_donor CD98hc,I_chr3R_3802791_3802855 chr3R - chr3R_3802791_3803283 chr3R_3802791_3802855 chr3R_3802691_3802790;chr3R_3803284_3803397 0.78 0.38 0.97 0.95 0.89 0.54 1.56 0.81 0.91 0.56 0.76 1.17 0.75 1.32 0.48 1.70 1.06 2.33 0.67 0.41 0.00 1.15 0.23 0.28 0.46 0.56 1.31 3.78 1.71 0.36 1.43 1.07 1.17 1.12 0.48 0.40 0.00 0.72 0.24 1.06 1.03 1.07 0.70 0.85 0.73 1.16 0.33 0.94 1.19 0.46 0.24 1.38 0.78 0.40 0.50 0.76 0.40 1.30 K jcn_only_AA CG33090,CEI_chr2L_14342636_14342777 chr2L + chr2L_14341577_14342783 chr2L_14341577_14342777 chr2L_14341307_14341576;chr2L_14342784_14342877 56.30 44.00 51.06 64.10 54.29 56.76 46.94 46.00 55.13 51.22 59.38 47.95 35.48 45.83 72.34 61.22 60.00 58.97 52.63 53.57 58.82 46.03 64.94 44.62 64.71 67.50 75.51 60.98 66.67 56.67 55.00 60.47 56.30 50.00 52.38 59.18 56.00 63.83 58.44 53.33 54.29 60.76 43.33 48.21 48.94 55.00 58.54 59.09 57.83 48.48 60.29 48.65 57.14 70.97 50.00 56.25 72.41 70.21 K alternative_donor aralar1,CG15535,I_chr3R_26249362_26249414 chr3R - chr3R_26249362_26249431 chr3R_26249362_26249414 chr3R_26249262_26249361;chr3R_26249432_26249514 0.00 0.00 5.56 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.45 NA 0.00 0.00 0.00 0.00 K alternative_acceptor CG31169,I_chr3R_18209085_18209133 chr3R + chr3R_18209081_18209172 chr3R_18209081_18209133 chr3R_18209073_18209080;chr3R_18209173_18209201 48.96 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 56.25 NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention l(1)G0156 chrX - chrX_19414861_19415360 chrX_19414860_19414861;chrX_19415360_19415361 chrX_19414693_19414860;chrX_19415361_19415376 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Shawn_Tyler,CG14207,RI_chrX_19502515_19504413,CRE_chrX_19503018_19503085,CE_chrX_19503187_19504413 chrX + chrX_19502515_19504413 chrX_19502514_19502515;chrX_19504413_19504414 chrX_19502499_19502514;chrX_19504414_19504495 100.00 100.00 100.00 88.89 NA NA NA 100.00 86.67 100.00 100.00 100.00 NA 100.00 NA 100.00 NA NA 100.00 100.00 NA 100.00 100.00 90.91 NA NA 91.67 NA 100.00 NA 100.00 NA 100.00 100.00 100.00 83.33 100.00 90.91 100.00 100.00 100.00 93.33 NA 100.00 NA 83.33 100.00 90.00 92.31 100.00 82.35 100.00 NA 100.00 100.00 91.67 81.82 91.67 N alternative_acceptor CG13900,I_chr3L_830745_830907 chr3L - chr3L_830715_830907;chr3L_830814_830907;chr3L_830729_830907 chr3L_830745_830907 chr3L_830908_831007;chr3L_830702_830714 1.45 3.03 3.92 5.88 0.00 2.33 4.76 1.14 0.00 0.00 2.70 2.56 0.00 2.22 1.75 1.45 2.44 0.00 0.00 2.94 2.27 3.85 1.89 4.08 0.00 0.00 1.54 5.71 0.00 0.00 1.71 2.86 1.96 3.45 3.70 0.00 0.00 0.00 0.00 1.72 0.00 3.23 0.00 0.00 0.00 3.70 0.00 2.70 1.39 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 4.88 N alternative_acceptor AnnIX,I_chr3R_16895383_16895999 chr3R + chr3R_16895383_16896445 chr3R_16895383_16895999 chr3R_16895283_16895382;chr3R_16896446_16896495 100.00 76.32 100.00 64.10 100.00 100.00 79.63 85.39 85.57 100.00 58.62 92.86 64.00 100.00 100.00 100.00 70.73 100.00 100.00 67.82 57.69 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 80.70 100.00 100.00 85.29 100.00 100.00 76.47 100.00 100.00 100.00 100.00 75.00 100.00 100.00 100.00 86.57 73.91 100.00 85.06 100.00 87.23 72.73 100.00 75.68 78.05 73.91 72.55 100.00 K intron_retention scny,I_chr3L_5763034_5768288 chr3L + chr3L_5768114_5768288 chr3L_5768113_5768114;chr3L_5768288_5768289 chr3L_5767514_5768113;chr3L_5768289_5768388 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA 90.00 38.46 60.00 NA NA NA 80.00 NA NA NA NA NA NA NA NA 50.00 NA NA 60.00 NA 28.57 NA NA NA 45.45 NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention skpA chrX + chrX_550818_551131 chrX_550817_550818;chrX_551131_551132 chrX_550493_550817;chrX_551132_551937 33.56 NA NA NA NA NA 30.77 61.54 23.33 NA NA 41.67 NA NA NA 41.67 NA NA NA 36.84 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA 36.36 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA 30.00 NA NA NA NA NA NA NA NA NA K intron_retention CG1407,RI_chr2R_5918952_5919093 chr2R - chr2R_5919841_5919898 chr2R_5919840_5919841;chr2R_5919898_5919899 chr2R_5919719_5919840;chr2R_5919899_5920393 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 1.22 0.46 0.00 0.00 0.00 0.00 0.00 0.63 0.00 1.52 0.87 0.72 0.00 1.53 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 K intron_retention CG8709,I_chr2R_4027128_4027182,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030636,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4030580_4033259 chr2R_4030579_4030580;chr2R_4033259_4033260 chr2R_4030480_4030579;chr2R_4033260_4033265 0.00 0.00 2.50 3.61 0.00 0.00 3.70 4.00 5.77 0.00 0.00 4.65 11.54 10.53 3.12 3.57 2.50 0.00 0.00 2.74 0.00 10.26 4.35 3.51 0.00 0.00 1.75 0.00 8.33 2.44 0.00 9.09 5.88 4.00 0.00 0.00 0.00 0.00 2.13 4.26 4.76 6.45 0.00 0.00 0.00 0.00 0.00 6.25 7.25 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 K alternative_donor zip,I_chr2R_20878796_20879147 chr2R - chr2R_20898140_20898992;chr2R_20898140_20898834 chr2R_20898140_20898898 chr2R_20897903_20898139;chr2R_20898993_20898996 66.67 63.33 74.76 74.42 68.57 70.73 66.67 75.25 71.98 66.67 75.00 73.68 71.96 75.76 69.67 70.43 72.38 78.35 76.61 66.22 77.38 45.76 38.64 35.48 40.74 71.95 23.08 60.98 56.12 55.88 77.05 67.11 66.79 72.06 58.82 44.26 55.77 40.00 52.78 60.34 61.04 73.20 76.00 59.26 69.77 66.67 46.15 65.99 73.42 50.00 35.00 48.39 52.00 23.08 73.53 52.17 62.96 70.99 K jcn_only_AD Uba1,I_chr2R_5579209_5579407 chr2R - chr2R_5579209_5579786 chr2R_5579209_5579407 chr2R_5579109_5579208;chr2R_5579787_5580879 0.39 0.51 0.00 0.00 0.55 0.28 0.38 0.00 0.24 0.32 0.63 0.00 0.00 0.00 0.47 0.46 0.58 0.57 0.30 0.13 0.30 1.02 0.85 0.37 0.91 0.80 0.69 1.89 0.58 0.41 2.19 0.00 0.24 0.18 0.59 0.50 0.35 0.00 0.43 1.05 0.27 0.14 0.34 0.75 0.29 1.27 0.33 0.00 0.53 1.66 0.39 0.97 0.98 0.00 0.22 0.00 0.44 0.60 K intron_retention shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9759231_9759483 chr2R_9759230_9759231;chr2R_9759483_9759484 chr2R_9759171_9759230;chr2R_9759484_9759658 0.00 0.00 1.28 0.00 0.00 0.00 3.57 0.98 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.72 0.00 0.70 0.00 0.60 0.00 0.00 0.47 0.00 0.00 2.92 0.00 1.44 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.63 1.53 0.00 0.54 0.00 0.00 0.00 0.00 0.00 2.22 0.90 1.05 0.31 0.00 0.00 0.00 1.22 0.00 0.00 0.00 K alternative_donor CG9323 chr2L - chr2L_20754938_20754992 chr2L_20754938_20754988 chr2L_20754809_20754937;chr2L_20754993_20755265 7.41 9.09 5.00 15.15 NA 4.55 17.86 10.34 7.50 NA 0.00 7.14 7.69 5.26 6.67 3.03 0.00 0.00 13.79 8.20 0.00 10.53 9.09 3.23 14.29 30.00 12.00 11.11 21.05 10.53 8.70 4.76 3.45 6.52 0.00 5.88 3.57 0.00 8.33 2.27 6.52 8.00 4.76 7.41 2.63 10.00 0.00 9.68 10.81 11.63 6.90 8.00 13.33 8.70 3.45 5.26 15.15 7.32 K intron_retention wech,I_chr2R_3373673_3377000,I_chr2R_3373673_3377045,I_chr2R_3373673_3377324,I_chr2R_3376705_3376837 chr2R - chr2R_3373673_3375960 chr2R_3373672_3373673;chr2R_3375960_3375961 chr2R_3373573_3373672;chr2R_3375961_3376252 63.64 54.55 63.64 53.85 NA NA 30.77 42.86 50.00 NA 69.23 58.82 60.00 57.14 73.33 52.63 33.33 NA 55.56 66.67 50.00 NA 63.64 84.62 NA NA 82.35 NA NA NA 72.73 77.78 50.00 61.11 69.23 NA NA 75.00 53.85 66.67 NA 51.72 77.78 41.67 NA 91.67 100.00 66.67 57.89 70.00 69.23 50.00 NA NA 69.23 90.00 92.31 NA K multi_cassette fra,I_chr2R_8447607_8449360 chr2R + chr2R_8447607_8449360 chr2R_8447607_8447663;chr2R_8448995_8449052;chr2R_8449301_8449360 chr2R_8447664_8448994;chr2R_8449053_8449300 chr2R_8447507_8447606;chr2R_8449361_8449460 100.00 100.00 94.12 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 K intron_retention CG13760 chrX - chrX_2478429_2478495 chrX_2478428_2478429;chrX_2478495_2478496 chrX_2477778_2478428;chrX_2478496_2478581 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 7.41 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748981_19749899;chr2R_19748981_19750012;chr2R_19748981_19749783 chr2R_19748981_19749882 chr2R_19748884_19748980;chr2R_19750013_19750013 3.26 3.03 2.86 1.54 3.45 5.56 7.58 6.02 3.26 5.56 3.12 3.57 2.86 2.63 2.27 5.33 2.56 2.38 2.00 1.04 2.44 8.82 6.52 4.88 6.06 4.65 2.56 3.85 5.88 3.03 4.17 3.33 3.12 3.03 14.29 8.11 3.70 3.57 2.33 5.63 10.20 6.02 3.03 2.56 4.17 4.88 8.00 2.00 1.25 2.86 2.27 3.23 4.00 3.57 1.82 0.00 2.33 1.82 K jcn_only_AD CG6006 chr3R + chr3R_11984096_11984579;chr3R_11983962_11984579;chr3R_11984036_11984579;chr3R_11984018_11984579 chr3R_11984029_11984579 chr3R_11984580_11984637;chr3R_11983945_11983961 22.54 NA NA NA NA NA 50.00 NA 19.23 NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA 20.83 NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA 22.50 NA NA NA NA NA NA 22.58 NA 26.09 NA NA NA NA NA NA NA K jcn_only_AD Traf-like,I_chrX_16309163_16309641,I_chrX_16309212_16309689,I_chrX_16309561_16309641,I_chrX_16309561_16309689,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16309561_16309689;chrX_16309163_16309689 chrX_16309619_16309689 chrX_16309690_16309741;chrX_16309112_16309162 95.58 96.67 98.28 94.44 98.15 98.33 95.24 94.90 95.59 96.77 92.31 97.70 85.19 97.44 96.77 100.00 95.65 96.72 96.88 90.32 95.08 94.87 88.46 97.01 87.50 94.00 98.08 NA 100.00 97.22 85.71 92.59 84.62 98.73 85.37 80.00 94.53 98.28 97.92 91.53 87.50 91.00 95.65 100.00 NA 92.86 88.89 91.67 96.15 98.21 92.31 93.44 96.77 95.56 96.77 94.55 97.37 NA K intron_retention Taf6 chr3L + chr3L_19594248_19594309 chr3L_19594247_19594248;chr3L_19594309_19594310 chr3L_19594013_19594247;chr3L_19594310_19594484 86.36 75.00 88.89 92.11 94.44 86.36 93.33 87.50 82.93 94.44 94.74 85.71 94.12 93.75 89.29 85.71 76.47 83.33 81.82 85.48 86.96 66.67 87.10 84.44 89.19 95.24 80.00 84.38 88.89 88.24 92.86 83.72 87.50 85.71 80.56 100.00 86.79 81.58 84.21 88.52 92.00 82.35 80.00 86.67 67.86 82.98 76.36 96.43 89.13 84.62 80.00 95.00 78.95 85.96 95.83 80.43 80.36 87.10 K jcn_only_AD CG5976 chr3L + chr3L_20467744_20468664 chr3L_20468598_20468664 chr3L_20468665_20469897;chr3L_20467566_20467743 100.00 NA 100.00 100.00 100.00 NA 100.00 92.50 95.74 NA 100.00 100.00 NA NA NA 95.45 95.65 NA 95.83 100.00 96.67 100.00 NA 96.30 NA 100.00 100.00 100.00 NA NA 100.00 NA NA 97.22 NA 100.00 NA NA 100.00 100.00 NA 100.00 NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA 95.83 NA 100.00 92.31 K intron_retention CG5973,I_chr2L_7441485_7443583,I_chr2L_7443388_7443583 chr2L + chr2L_7440852_7443583 chr2L_7440851_7440852;chr2L_7443583_7443584 chr2L_7440710_7440851;chr2L_7443584_7443683 39.28 NA NA NA NA NA NA 35.71 42.86 NA NA NA NA NA NA NA NA NA NA 47.06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 35.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Dek chr2R + chr2R_12743821_12744310 chr2R_12743820_12743821;chr2R_12744310_12744311 chr2R_12743729_12743820;chr2R_12744311_12744557 52.63 66.67 53.85 33.33 NA 60.00 37.50 64.29 41.38 NA 25.00 65.00 45.45 53.33 57.14 50.00 45.45 43.75 60.00 42.86 53.85 NA 66.67 57.89 NA 70.00 53.85 NA 30.77 35.71 52.63 41.67 34.78 57.89 NA 42.86 50.00 53.85 47.06 45.83 NA 53.85 60.00 45.45 30.77 37.50 53.33 18.18 63.16 62.50 40.00 60.00 87.50 66.67 43.75 62.50 NA 21.74 K intron_retention Cyp12a5,Cyp12a4 chr3R + chr3R_14959103_14959154 chr3R_14959102_14959103;chr3R_14959154_14959155 chr3R_14958612_14959102;chr3R_14959155_14959602 12.97 15.15 6.67 37.14 10.00 0.00 12.90 7.87 21.33 NA 6.90 19.51 18.42 22.22 28.21 17.54 12.90 14.29 15.91 14.81 8.33 NA NA NA NA 0.00 35.71 NA NA NA 20.00 NA NA 13.73 NA NA NA NA NA 12.12 NA 14.29 7.41 12.12 NA 4.76 4.55 9.52 13.46 NA 13.04 10.00 NA NA 22.22 6.67 NA 7.41 K intron_retention CG31159 chr3R + chr3R_18440899_18440950 chr3R_18440898_18440899;chr3R_18440950_18440951 chr3R_18440681_18440898;chr3R_18440951_18441462 0.00 NA NA NA NA NA NA NA 4.35 NA NA NA NA NA NA NA NA NA NA 8.33 NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 K alternative_donor RpL15 chr3LHet + chr3LHet_2398018_2398127;chr3LHet_2397859_2398127;chr3LHet_2397992_2398127;chr3LHet_2398060_2398127;chr3LHet_2397841_2398127;chr3LHet_2398002_2398127;chr3LHet_2397820_2398127;chr3LHet_2398053_2398127 chr3LHet_2397925_2398127 chr3LHet_2398128_2398454;chr3LHet_2397802_2397819 0.00 0.00 0.00 0.35 0.00 0.00 1.39 0.36 0.00 0.00 0.00 1.79 0.00 3.70 0.00 1.72 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 1.56 3.57 0.00 0.84 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.43 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG32626 chrX - chrX_13728240_13728847;chrX_13727056_13728847 chrX_13727065_13728847 chrX_13728848_13729182 54.55 58.21 56.03 54.95 66.67 61.63 57.38 58.42 59.41 48.51 54.81 48.24 58.54 51.49 64.44 56.25 55.65 48.57 58.49 59.32 69.30 47.98 50.00 46.73 54.55 61.64 48.87 50.24 47.86 39.32 66.34 45.61 45.60 56.42 57.04 51.54 51.14 52.71 50.57 56.47 48.10 58.41 57.14 55.10 47.37 51.89 49.46 42.42 56.28 45.24 52.82 60.53 52.63 56.49 62.28 51.81 46.91 54.24 K intron_retention I_chr3L_17833072_17833135,CG5567,MED19 chr3L - chr3L_17837995_17838853 chr3L_17837994_17837995;chr3L_17838853_17838854 chr3L_17837880_17837994;chr3L_17838854_17839594 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 2.13 2.27 0.00 0.00 0.00 2.70 0.00 3.92 0.00 0.00 0.00 1.89 1.64 0.96 0.00 2.17 2.78 3.39 0.00 0.00 0.00 0.00 0.00 3.03 0.00 1.61 0.00 1.49 1.92 0.00 1.59 0.85 4.55 1.37 0.00 0.00 2.30 0.00 2.11 1.19 0.00 3.23 0.00 0.00 0.00 1.06 0.00 0.00 K intron_retention PhKgamma,I_chrX_11590179_11590249,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11590345_11590435 chrX_11590344_11590345;chrX_11590435_11590436 chrX_11590250_11590344;chrX_11590436_11590535 37.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 37.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N cassette Dscam,F_chr2R_3219886_3228832,F_chr2R_3226043_3235353,F_chr2R_3227948_3235353,F_chr2R_3228738_3235353,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3219886_3235353 chr2R_3219886_3231783;chr2R_3232075_3235353 chr2R_3231784_3232074 chr2R_3219786_3219885;chr2R_3235354_3235453 100.00 56.25 58.82 40.00 100.00 100.00 61.90 53.57 100.00 100.00 100.00 100.00 47.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 11.76 100.00 100.00 100.00 100.00 100.00 100.00 47.06 100.00 100.00 NA 33.33 100.00 100.00 100.00 100.00 100.00 100.00 55.56 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 72.41 100.00 55.56 100.00 100.00 NA 60.00 46.15 NA 100.00 K jcn_only_AA CG10080 chr2R + chr2R_17518321_17518491 chr2R_17518321_17518377 chr2R_17518123_17518320;chr2R_17518492_17518801 100.00 100.00 100.00 100.00 100.00 99.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.68 100.00 99.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N jcn_only_AD CG2052,RI_chr4_407611_409383 chr4 - chr4_407611_411050 chr4_407611_407679 chr4_407533_407610;chr4_411051_411100 96.15 NA 100.00 NA NA NA NA 89.66 100.00 NA NA 85.00 NA NA NA NA NA NA NA 95.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 96.15 NA NA NA NA NA NA NA NA NA K cassette CG40263,F_chr2RHet_1265687_1293040,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1293394_1335781 chr2RHet_1293394_1324445;chr2RHet_1324541_1335781 chr2RHet_1324446_1324540 chr2RHet_1293236_1293393;chr2RHet_1335782_1335833 97.92 95.00 95.83 75.00 95.00 95.45 90.62 98.85 98.39 NA NA 94.59 100.00 96.97 95.24 92.86 100.00 94.12 100.00 90.91 100.00 NA 86.67 92.86 100.00 100.00 91.67 NA NA 83.33 90.62 100.00 NA 94.74 90.91 NA 100.00 100.00 100.00 100.00 100.00 97.92 95.00 100.00 100.00 100.00 90.00 100.00 97.92 100.00 100.00 100.00 85.71 100.00 96.97 100.00 87.50 100.00 K alternative_donor Abl,I_chr3L_16622304_16639909,RI_chr3L_16652567_16654512 chr3L - chr3L_16618375_16619627 chr3L_16618375_16619372 chr3L_16616737_16618374;chr3L_16619628_16619716 18.64 13.41 18.29 56.07 4.92 7.84 40.40 27.08 16.87 18.00 29.03 36.36 44.64 15.79 16.67 29.49 11.76 13.04 29.11 17.84 15.58 27.61 18.64 17.57 28.95 31.15 29.76 25.00 34.15 21.43 27.91 26.53 23.20 16.80 18.48 52.22 12.03 13.41 13.51 21.43 40.96 17.33 16.36 31.52 16.84 23.08 9.62 34.97 20.42 22.41 18.89 15.52 10.91 16.00 13.19 16.67 16.07 22.35 K alternative_donor Syx4,I_chrX_2636831_2636971 chrX - chrX_2636831_2637483 chrX_2636831_2636949 chrX_2636731_2636830;chrX_2637484_2637679 1.98 2.00 1.82 2.38 1.89 2.00 1.64 2.78 1.72 NA 4.00 3.80 4.55 3.77 6.00 2.70 2.27 2.00 1.79 1.19 2.94 2.38 2.00 2.70 0.00 0.00 0.00 6.25 4.35 2.13 1.27 0.00 2.08 2.30 1.69 4.76 1.61 0.00 1.41 1.75 0.00 2.91 1.96 0.00 0.00 1.18 0.00 3.39 3.30 1.72 3.12 2.70 0.00 0.00 1.45 1.82 2.04 0.00 K alternative_acceptor CG5991 chr3R + chr3R_19876703_19877425;chr3R_19876703_19877411 chr3R_19876703_19877421 chr3R_19876688_19876702;chr3R_19877426_19877477 42.86 NA NA 33.33 NA NA 50.00 50.00 53.85 NA NA 45.45 NA 50.00 63.64 36.36 40.00 NA 42.86 60.00 NA NA 40.00 NA NA 42.86 40.00 50.00 44.44 28.57 14.29 NA 41.67 42.86 50.00 42.86 33.33 20.00 NA 47.06 28.57 43.75 44.44 33.33 NA 50.00 42.86 50.00 46.67 40.00 55.56 NA 30.00 33.33 60.00 37.50 16.67 44.44 K jcn_only_AA Nup153,I_chrX_16495232_16495296 chrX + chrX_16495232_16495408 chrX_16495232_16495296 chrX_16495132_16495231;chrX_16495409_16499819 1.01 0.00 1.11 1.04 0.00 1.23 4.30 0.00 0.47 2.53 1.39 0.60 1.72 2.15 1.08 0.00 0.00 0.00 1.20 0.00 1.47 2.47 0.59 1.36 0.00 1.08 0.80 0.00 0.00 0.00 1.25 0.00 1.02 0.00 1.82 0.00 1.99 0.84 0.55 2.56 3.12 1.01 0.00 1.82 2.50 1.54 1.49 2.20 1.42 0.00 0.70 1.28 0.00 0.00 0.00 1.72 0.00 0.00 K alternative_acceptor Su(var)2-HP2 chr2R - chr2R_10499194_10499285 chr2R_10499197_10499285 chr2R_10499286_10499446;chr2R_10499125_10499193 90.45 90.00 91.67 72.22 75.00 100.00 94.74 88.89 88.46 87.50 87.50 95.24 80.00 88.89 91.67 94.12 NA 90.91 88.89 96.00 90.00 100.00 87.50 93.33 92.86 100.00 83.33 NA 87.50 100.00 90.00 NA 90.91 88.89 100.00 93.75 86.67 100.00 75.00 95.45 NA 88.46 84.62 90.91 NA 90.00 88.89 100.00 90.91 100.00 88.89 100.00 NA NA 75.00 90.91 NA NA K intron_retention Tsp39D chr2L + chr2L_21356683_21356739 chr2L_21356682_21356683;chr2L_21356739_21356740 chr2L_21356104_21356682;chr2L_21356740_21358273 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 NA 14.81 0.00 NA 9.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Dsp1,I_chrX_16231287_16231413 chrX + chrX_16227804_16228333 chrX_16227803_16227804;chrX_16228333_16228334 chrX_16227698_16227803;chrX_16228334_16228446 100.00 100.00 96.30 100.00 100.00 100.00 100.00 98.00 98.31 100.00 100.00 98.18 96.30 100.00 100.00 100.00 95.24 100.00 100.00 98.44 100.00 100.00 93.02 100.00 100.00 100.00 100.00 100.00 100.00 93.55 97.06 100.00 100.00 100.00 100.00 100.00 96.00 100.00 95.45 100.00 100.00 97.92 96.30 97.06 NA 100.00 100.00 100.00 98.28 96.15 97.30 100.00 100.00 94.74 100.00 94.12 93.33 100.00 K intron_retention MRP,F_chr2L_12727117_12736035 chr2L + chr2L_12719241_12722354 chr2L_12719240_12719241;chr2L_12722354_12722355 chr2L_12719072_12719240;chr2L_12722355_12722484 7.48 6.43 10.17 19.46 10.10 11.90 5.38 8.78 8.77 6.45 11.69 7.89 5.95 10.79 9.05 8.89 9.42 4.94 8.88 8.20 8.28 19.41 4.21 5.68 11.70 8.12 4.74 4.40 7.35 5.02 11.28 2.86 4.87 9.12 10.00 7.17 4.75 5.21 5.58 8.54 7.32 9.75 9.22 4.29 7.48 7.02 9.64 5.77 9.46 7.32 5.24 8.63 5.31 5.71 11.32 6.19 2.03 3.87 K intron_retention vari,I_chr2L_20789508_20789585,I_chr2L_20792267_20794059 chr2L - chr2L_20789424_20789585 chr2L_20789423_20789424;chr2L_20789585_20789586 chr2L_20789408_20789423;chr2L_20789586_20789660 0.72 0.00 2.00 1.19 0.00 0.00 5.71 3.53 2.65 0.00 1.47 1.72 0.00 0.00 2.60 5.63 0.00 1.54 0.00 2.50 0.00 3.51 1.18 0.00 1.33 0.00 1.74 0.00 0.00 0.00 1.41 0.00 0.00 2.88 0.00 2.53 0.53 0.00 0.57 2.40 5.45 0.73 0.00 2.04 0.87 0.72 0.00 0.00 1.55 0.88 1.43 1.41 0.00 0.00 0.00 0.00 0.00 3.28 K intron_retention I_chrX_2036036_2037024,Pgd chrX + chrX_2039448_2039522 chrX_2039447_2039448;chrX_2039522_2039523 chrX_2039132_2039447;chrX_2039523_2039746 0.00 0.00 0.00 0.61 0.00 0.00 0.61 1.03 0.60 5.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 NA NA NA 0.00 NA 6.67 0.00 0.00 0.00 0.00 0.00 0.54 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 NA NA 0.00 K alternative_acceptor CG9399,I_chr3R_5403032_5403329 chr3R - chr3R_5399318_5399524;chr3R_5399255_5399524 chr3R_5399352_5399524 chr3R_5399525_5399559;chr3R_5399076_5399254 28.57 NA NA 25.00 NA 40.00 44.44 NA 32.14 20.00 15.38 25.00 NA 54.55 26.32 14.29 57.14 NA NA 52.63 25.00 NA NA 26.67 NA 9.09 28.57 NA NA NA 28.57 NA 33.33 10.00 60.00 NA 27.27 NA 60.00 55.00 33.33 NA 28.57 30.00 40.00 43.75 28.57 41.67 NA 11.11 16.67 NA 10.00 22.22 NA NA NA 50.00 N intron_retention ras chrX + chrX_10640260_10640321 chrX_10640259_10640260;chrX_10640321_10640322 chrX_10640109_10640259;chrX_10640322_10640360 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette I_chr2L_6956220_6956307,sip2_CG9188 chr2L - chr2L_6963555_6963938 chr2L_6963555_6963743;chr2L_6963856_6963938 chr2L_6963744_6963855 chr2L_6961895_6963554;chr2L_6963939_6964073 17.86 20.83 24.00 16.46 17.86 25.00 26.87 35.85 22.06 4.65 15.69 14.00 11.76 23.26 19.30 36.14 22.22 19.61 23.33 12.58 20.41 40.62 16.24 15.00 16.33 34.48 25.81 15.38 15.69 21.54 18.46 17.39 15.91 28.92 12.31 22.41 17.86 21.05 22.37 11.86 12.07 22.77 21.74 16.87 22.22 14.86 11.11 7.08 24.73 16.90 19.47 17.07 17.65 12.07 20.00 13.79 12.90 10.34 K intron_retention Ect4,I_chr3L_8075556_8086158,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8098160_8098226 chr3L_8098159_8098160;chr3L_8098226_8098227 chr3L_8097980_8098159;chr3L_8098227_8098396 0.41 0.87 0.72 1.65 0.00 0.98 0.00 1.14 0.83 1.37 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.86 0.00 0.84 0.00 2.79 1.33 0.65 3.54 0.00 1.94 6.32 7.69 0.00 0.00 0.00 0.00 0.59 1.61 1.48 0.00 0.81 0.00 1.75 4.82 0.41 0.00 0.00 0.00 0.00 0.00 0.81 1.59 0.98 1.28 0.00 0.00 0.00 0.78 0.00 0.00 0.00 K alternative_donor MAPk-Ak2,RI_chrX_5655618_5656137,I_chrX_5656715_5657427,I_chrX_5656715_5657893,I_chrX_5656715_5657974 chrX - chrX_5656715_5658126;chrX_5656715_5658101 chrX_5656715_5658141 chrX_5656615_5656714;chrX_5658142_5658214 1.72 2.50 1.75 0.00 2.04 2.50 4.94 1.12 0.82 2.56 2.33 2.15 0.00 2.22 1.89 1.25 0.00 2.22 1.89 1.05 0.00 3.92 1.52 1.72 0.00 0.00 7.02 6.06 0.00 0.00 1.59 5.56 0.00 1.45 3.23 2.38 1.64 2.00 1.72 2.27 0.00 0.00 0.00 1.79 0.00 4.08 2.00 0.00 2.30 0.00 0.00 0.00 0.00 2.70 0.00 2.04 2.13 3.57 K intron_retention CG11523 chr3L - chr3L_22259084_22259175 chr3L_22259083_22259084;chr3L_22259175_22259176 chr3L_22258906_22259083;chr3L_22259176_22259747 96.49 93.33 100.00 96.00 100.00 100.00 95.24 97.37 96.55 NA 100.00 96.77 85.71 100.00 100.00 96.97 100.00 92.86 100.00 96.43 91.67 91.67 NA 100.00 NA 100.00 91.67 NA 93.75 100.00 100.00 91.67 92.31 96.88 100.00 91.67 90.00 NA 90.00 95.45 89.66 97.06 100.00 NA 92.31 97.78 100.00 88.57 96.97 92.86 90.91 100.00 NA 81.82 94.12 88.24 92.86 98.33 K alternative_acceptor Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754356_15755184;chrX_15754356_15755256;chrX_15754356_15755172;chrX_15754356_15755268 chrX_15754356_15755409 chrX_15754256_15754355;chrX_15755410_15755509 4.00 4.76 6.25 0.00 0.00 NA 0.00 2.00 4.88 NA NA 0.00 2.17 0.00 5.56 1.89 0.00 5.00 3.23 2.00 NA 0.00 4.00 6.67 6.67 NA 5.00 NA 18.18 5.88 4.55 NA 6.45 2.04 6.25 NA 4.35 NA NA 3.57 7.14 8.33 3.03 4.35 0.00 4.00 NA 0.00 2.50 NA 0.00 6.25 NA 0.00 0.00 NA 10.00 6.25 K intron_retention I_chr2R_4783150_4783708,Ggamma1,noncoding_5300 chr2R + chr2R_4789042_4789832 chr2R_4789041_4789042;chr2R_4789832_4789833 chr2R_4788986_4789041;chr2R_4789833_4790635 100.00 100.00 100.00 99.10 100.00 100.00 98.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.85 100.00 100.00 100.00 100.00 98.48 100.00 100.00 98.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 97.83 100.00 K alternative_acceptor l(2)35Cc,RI_chr2L_15256698_15256752 chr2L + chr2L_15256698_15256752 chr2L_15256698_15256748 chr2L_15256624_15256697;chr2L_15256753_15256852 97.06 100.00 92.86 93.75 100.00 100.00 90.48 95.00 96.67 NA 92.31 100.00 92.31 100.00 100.00 92.86 100.00 90.00 100.00 97.06 100.00 100.00 95.65 100.00 81.82 100.00 100.00 100.00 90.91 100.00 90.91 90.91 90.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 90.91 100.00 100.00 100.00 75.00 95.24 100.00 NA 95.65 100.00 100.00 91.67 94.12 94.12 94.12 84.21 95.24 93.33 N intron_retention Stat92E,I_chr3R_16367780_16376442,I_chr3R_16367780_16377802,I_chr3R_16367815_16368548,att-ORFB chr3R - chr3R_16367276_16367331 chr3R_16367275_16367276;chr3R_16367331_16367332 chr3R_16366245_16367275 12.12 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.12 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention east,CR_chrX_1912038_1912737 chrX + chrX_1912243_1912737 chrX_1912242_1912243;chrX_1912737_1912738 chrX_1912113_1912242;chrX_1912738_1912837 5.41 0.00 7.41 4.44 0.00 9.09 5.71 3.92 3.70 NA 3.85 6.00 9.09 0.00 16.67 7.50 8.70 0.00 6.67 6.56 0.00 11.11 9.09 0.00 13.04 0.00 5.13 NA 0.00 20.83 5.41 NA NA 4.76 NA 5.88 10.34 4.76 7.89 16.00 NA 3.92 8.33 13.04 0.00 0.00 0.00 0.00 5.00 0.00 14.29 0.00 11.11 NA 16.67 NA 12.50 0.00 K intron_retention CG32529 chrX + chrX_19798479_19798541 chrX_19798478_19798479;chrX_19798541_19798542 chrX_19798319_19798478;chrX_19798542_19798710 0.50 0.29 0.80 1.60 0.00 0.81 1.47 1.29 0.69 0.56 0.78 0.64 0.00 0.44 1.57 1.57 0.50 0.00 0.00 0.37 0.00 0.70 0.71 1.03 1.28 5.76 1.21 1.74 2.23 0.58 0.00 0.00 0.33 0.63 0.00 0.36 0.67 0.00 1.12 0.19 3.92 0.00 0.00 0.00 0.82 0.00 0.00 0.49 0.94 0.33 0.76 0.00 0.00 0.00 0.37 0.00 0.00 0.95 K jcn_only_AA MRG15,I_chr3R_11103293_11103335,l(3)neo43,F_chr3R_11104164_11104239 chr3R - chr3R_11103278_11103335 chr3R_11103293_11103335 chr3R_11103336_11103435;chr3R_11103193_11103277 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 1.47 0.00 0.00 2.60 0.00 0.00 0.00 1.92 3.57 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 1.72 1.92 0.00 0.00 0.00 3.51 1.89 3.95 0.00 0.00 0.00 7.50 1.79 2.35 3.08 3.96 3.66 0.00 0.00 0.00 3.45 2.08 2.00 0.00 1.39 0.00 K alternative_acceptor Imp,RI_chrX_10699665_10700695 chrX - chrX_10692578_10692651 chrX_10692599_10692651 chrX_10692652_10693026;chrX_10691869_10692577 9.53 13.33 10.13 10.94 6.85 6.35 10.81 9.35 11.92 12.50 7.23 10.94 11.27 11.27 8.05 9.80 7.69 9.21 11.69 11.11 9.38 16.00 8.08 7.25 13.04 15.62 5.43 7.27 13.51 7.84 7.69 6.25 11.11 8.40 9.76 17.78 7.14 8.51 9.23 14.08 28.57 8.45 10.61 10.34 12.50 4.00 6.25 9.09 12.06 7.69 4.00 11.54 5.56 NA 7.78 4.35 14.71 9.68 K alternative_donor Nedd4,I_chr3L_17532828_17532882,I_chr3L_17532828_17533787,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17532828_17533790 chr3L_17532837_17533790 chr3L_17533791_17533887;chr3L_17532728_17532827 77.42 80.95 81.54 90.14 76.47 68.66 51.19 78.95 74.02 76.47 95.24 70.18 75.68 75.00 68.35 75.00 70.00 83.58 70.83 76.07 89.19 84.00 80.83 82.28 86.15 66.67 77.01 77.50 68.12 80.00 77.94 71.79 75.71 74.47 71.19 72.46 77.48 76.34 83.33 68.18 75.00 79.63 81.08 80.26 84.44 79.55 75.61 84.09 73.79 81.63 78.41 67.16 67.57 77.42 77.61 78.57 86.49 86.84 K cassette Nipped-B,I_chr2R_580301_580515,I_chr2R_580453_580515,I_chr2R_580989_582555,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_580301_580515 chr2R_580301_580367;chr2R_580453_580515 chr2R_580368_580452 chr2R_580236_580300;chr2R_580516_580582 87.50 NA 83.33 90.00 NA 83.33 86.84 88.89 94.44 NA NA 93.75 91.67 100.00 87.50 93.75 NA NA 71.43 70.59 NA 87.50 NA 100.00 NA 87.50 90.00 50.00 100.00 100.00 94.12 85.71 75.00 90.48 NA 87.50 NA NA NA 100.00 70.00 94.74 88.89 100.00 72.73 87.50 NA 84.21 85.00 85.71 75.00 NA NA NA 100.00 NA 75.00 94.12 K intron_retention CG5515,I_chr3R_20017846_20017911,I_chr3R_20018643_20018703 chr3R - chr3R_20014184_20014237 chr3R_20014183_20014184;chr3R_20014237_20014238 chr3R_20013404_20014183;chr3R_20014238_20014329 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 8.00 8.51 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Nca,CG7646 chr3L + chr3L_19986423_19988473 chr3L_19988052_19988473 chr3L_19988474_19988523 95.41 NA NA 80.95 NA NA NA 96.97 97.30 NA NA 95.00 NA NA NA NA NA NA 90.48 95.83 NA NA NA NA NA NA NA NA NA NA NA NA NA 86.36 NA 95.83 NA NA NA NA NA 90.48 NA NA NA NA NA NA 96.55 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG3194,CG17266 chr2R - chr2R_2560392_2560453 chr2R_2560392_2560447 chr2R_2559013_2560391;chr2R_2560454_2560850 56.52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.71 NA 63.64 NA NA NA NA NA NA NA NA NA 45.83 NA NA NA NA NA NA NA 52.00 NA NA NA NA NA 56.52 NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG31033,RI_chr3R_25658089_25658914 chr3R - chr3R_25658089_25658914;chr3R_25658095_25658914 chr3R_25658071_25658914 chr3R_25658915_25659003;chr3R_25657989_25658070 80.70 86.15 85.11 46.27 78.79 80.77 47.95 88.42 84.40 78.95 84.44 81.30 74.00 83.05 79.55 56.41 67.27 80.36 85.71 79.67 74.07 78.12 71.43 87.34 75.68 51.56 77.63 86.79 80.70 85.94 84.06 84.29 82.76 74.07 82.35 49.09 74.14 84.06 91.25 83.33 61.11 84.51 82.86 83.33 79.49 88.89 72.88 93.69 76.69 82.81 76.47 78.85 87.23 75.00 80.95 76.92 77.03 87.16 K jcn_only_AA drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389400_9390195;chr2R_9389597_9390195;chr2R_9389430_9390195 chr2R_9389714_9390195 chr2R_9390196_9390251;chr2R_9389318_9389399 0.00 0.00 0.00 2.47 0.00 0.00 1.01 0.00 1.83 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 1.40 0.00 2.08 1.10 3.08 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 3.03 0.00 1.72 0.00 3.51 0.00 0.00 0.00 NA 0.00 5.56 0.00 3.33 0.00 1.28 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention eIF-5A,I_chr2R_19946299_19946454,I_chr2R_19946657_19946733,RI_chr2R_19946806_19946861,I_chr2R_19948517_19948682 chr2R + chr2R_19946657_19946718 chr2R_19946656_19946657;chr2R_19946718_19946719 chr2R_19946588_19946656;chr2R_19946719_19946799 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.07 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15769239_15769339 chrX_15769239_15769300 chrX_15769171_15769238;chrX_15769340_15769402 98.70 100.00 96.43 97.22 88.89 96.30 96.43 97.22 97.78 100.00 100.00 100.00 100.00 100.00 96.43 100.00 93.75 100.00 100.00 95.77 100.00 96.97 100.00 100.00 100.00 100.00 96.30 92.86 100.00 100.00 100.00 97.87 100.00 97.62 100.00 95.24 100.00 95.00 100.00 98.33 97.87 95.12 100.00 100.00 96.00 98.63 96.43 98.70 97.87 90.91 97.06 100.00 100.00 96.00 100.00 100.00 100.00 98.55 K alternative_acceptor CG31033,RI_chr3R_25658089_25658914 chr3R - chr3R_25658089_25658914;chr3R_25658095_25658914 chr3R_25658071_25658914 chr3R_25658915_25659003;chr3R_25657989_25658070 86.84 93.18 85.29 57.89 86.36 90.91 64.10 91.04 87.01 81.48 93.33 85.71 81.82 87.80 89.47 66.67 81.82 86.84 92.31 87.65 80.56 85.71 78.18 94.34 80.00 68.57 82.69 89.19 84.62 86.96 85.71 89.58 81.25 85.29 91.11 62.50 86.11 91.30 86.89 92.00 78.43 87.00 87.50 89.58 84.91 90.36 83.78 91.46 84.09 88.37 86.36 85.71 90.91 88.24 89.09 90.00 83.67 86.92 K jcn_only_AA Irbp chr3R + chr3R_7236841_7236963 chr3R_7236841_7236941 chr3R_7236778_7236840;chr3R_7236964_7238112 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG16758,I_chr3L_2501142_2502594,I_chr3L_2502724_2503142 chr3L - chr3L_2502724_2503142;chr3L_2500463_2503142 chr3L_2501142_2503142 chr3L_2503143_2503242 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 NA NA 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Pitslre,I_chr3L_20764965_20765781,I_chr3L_20764965_20766192,I_chr3L_20764965_20766212,I_chr3L_20766064_20766192,I_chr3L_20766064_20766215,RI_chr3L_20766064_20766893,I_chr3L_20766311_20766664,I_chr3L_20766311_20766893,I_chr3L_20766773_20766893 chr3L + chr3L_20764709_20766893 chr3L_20764965_20766893 chr3L_20766894_20766993;chr3L_20764640_20764708 100.00 100.00 NA NA NA NA NA NA 96.55 100.00 NA NA NA NA NA NA NA NA NA 95.83 NA NA 100.00 100.00 100.00 NA 100.00 100.00 96.43 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 93.94 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 95.24 NA K intron_retention RI_chr2L_8218680_8218853,Pvr,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8221968_8222225 chr2L_8221967_8221968;chr2L_8222225_8222226 chr2L_8221488_8221967;chr2L_8222226_8222376 80.83 81.30 80.00 83.00 87.76 89.23 88.61 93.46 85.32 72.46 85.71 84.56 89.71 88.00 87.13 84.93 83.33 88.31 90.00 78.41 82.19 77.59 60.87 71.13 74.42 85.48 70.75 73.33 79.07 78.07 80.68 80.65 76.74 93.52 84.51 88.16 72.36 80.99 77.91 80.83 77.05 84.28 86.15 81.06 66.23 77.10 76.43 78.26 81.44 68.10 78.31 85.48 75.96 76.67 89.32 77.19 73.15 74.55 K intron_retention I_chr2L_8213024_8213227,CG8360 chr2L + chr2L_8213283_8213336 chr2L_8213282_8213283;chr2L_8213336_8213337 chr2L_8213228_8213282;chr2L_8213337_8213402 8.82 6.67 0.00 8.33 0.00 4.44 8.33 10.29 9.76 0.00 7.41 6.67 12.50 9.09 4.26 8.51 10.53 10.20 2.78 6.74 9.68 9.46 16.28 14.63 8.33 4.17 12.50 40.00 14.29 5.00 13.64 12.00 10.87 10.00 8.82 21.21 8.00 9.30 10.81 12.24 7.41 8.82 3.85 11.76 7.14 10.42 2.78 11.76 10.34 12.12 6.56 9.76 5.41 7.14 5.56 5.00 4.29 9.43 K intron_retention syd,I_chr3L_7924891_7925400 chr3L - chr3L_7920921_7921016 chr3L_7920920_7920921;chr3L_7921016_7921017 chr3L_7920860_7920920;chr3L_7921017_7921217 46.15 36.36 44.44 15.00 47.06 47.06 68.75 47.06 48.48 47.06 52.94 34.78 46.15 NA 50.00 45.00 36.36 35.71 71.43 34.15 56.25 70.83 44.00 35.29 71.43 80.00 53.33 NA 58.33 29.41 52.00 35.71 40.00 48.15 40.00 66.67 47.83 26.32 31.25 NA 73.33 46.88 46.15 60.00 31.25 46.15 40.00 30.30 45.83 50.00 39.13 NA 35.71 NA NA 23.53 36.36 26.09 K cassette CG11727,CREI_chrX_11327451_11328532 chrX - chrX_11330430_11331055 chrX_11330430_11330807;chrX_11330826_11331055 chrX_11330808_11330825 chrX_11329762_11330429;chrX_11331056_11331170 75.00 NA NA 100.00 NA NA NA NA 69.23 NA NA NA NA NA NA NA NA NA NA 92.86 NA 36.36 62.50 75.00 NA NA NA NA 36.36 75.00 NA NA 90.91 87.50 77.78 NA NA NA NA NA NA 75.00 NA NA NA NA NA 71.43 75.00 NA 54.55 NA NA NA NA NA NA NA K cassette CG5522 chr2R + chr2R_12677421_12678243 chr2R_12677421_12677660;chr2R_12677772_12678243 chr2R_12677661_12677771 chr2R_12677217_12677420;chr2R_12678244_12679955 1.37 1.00 1.92 1.42 1.13 1.08 0.94 1.05 1.59 1.10 1.34 2.56 1.04 1.08 0.97 1.23 1.97 1.82 0.94 1.93 1.88 2.34 1.30 1.70 1.92 0.55 2.02 1.95 1.01 1.03 1.40 2.10 1.19 1.14 1.28 3.47 0.92 1.44 1.33 0.97 1.37 0.85 1.41 1.22 1.03 1.78 2.00 1.41 0.90 1.68 1.08 1.60 2.78 2.24 0.45 1.61 2.12 2.73 K intron_retention CG9184 chr3L - chr3L_1322703_1322751 chr3L_1322702_1322703;chr3L_1322751_1322752 chr3L_1322541_1322702;chr3L_1322752_1323409 35.12 NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA NA NA NA 28.57 NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention l(1)G0230 chrX + chrX_10107519_10107592 chrX_10107518_10107519;chrX_10107592_10107593 chrX_10107314_10107518;chrX_10107593_10107804 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Mi-2 chr3L - chr3L_19881576_19881637 chr3L_19881579_19881637 chr3L_19881638_19881714;chr3L_19881332_19881575 15.68 16.96 14.42 12.50 13.41 19.59 11.76 11.97 12.61 17.35 12.36 15.96 20.31 14.61 15.93 12.15 17.46 15.71 10.53 15.79 28.40 15.00 15.68 19.87 18.75 7.89 12.03 21.43 12.95 14.63 14.77 14.08 16.79 13.87 19.42 16.06 15.59 10.85 18.12 19.23 12.35 14.21 15.94 13.79 16.90 14.86 22.88 18.42 13.25 22.22 11.28 18.63 15.79 25.00 20.39 13.92 17.31 10.48 K intron_retention br,I_chrX_1517022_1518170 chrX + chrX_1531173_1531316 chrX_1531172_1531173;chrX_1531316_1531317 chrX_1531033_1531172;chrX_1531317_1531367 0.00 0.00 2.86 2.70 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8735,noncoding_5214 chr2R - chr2R_4487364_4487423 chr2R_4487363_4487364;chr2R_4487423_4487424 chr2R_4487316_4487363;chr2R_4487424_4487429 96.76 92.86 95.45 93.75 95.00 94.12 97.37 97.44 97.96 100.00 93.33 96.97 94.12 100.00 100.00 100.00 92.31 96.00 92.59 96.23 95.45 100.00 100.00 100.00 100.00 100.00 92.86 90.00 100.00 94.74 100.00 100.00 95.12 96.55 91.67 100.00 100.00 100.00 100.00 97.30 100.00 90.00 93.33 93.33 97.30 100.00 90.00 96.00 95.24 100.00 91.67 100.00 100.00 NA 96.30 100.00 94.74 96.49 K intron_retention l(2)03709,I_chr2R_14707617_14707700,I_chr2R_14708048_14708095 chr2R + chr2R_14708789_14708994 chr2R_14708788_14708789;chr2R_14708994_14708995 chr2R_14708689_14708788;chr2R_14708995_14709059 97.14 97.75 97.50 98.85 97.83 98.36 99.57 98.80 95.21 97.22 98.53 97.06 94.12 98.70 98.86 99.03 100.00 98.48 97.85 97.14 98.21 90.54 96.75 96.69 96.59 98.91 96.18 92.13 96.25 90.14 98.86 94.44 88.89 96.75 95.06 89.77 94.37 92.86 94.67 97.76 94.37 97.67 98.81 97.06 93.75 98.95 98.81 95.56 97.62 93.81 92.97 95.95 98.51 94.32 97.22 93.33 99.23 98.28 N intron_retention CG13384 chr2L + chr2L_8386142_8386216 chr2L_8386141_8386142;chr2L_8386216_8386217 chr2L_8386121_8386141;chr2L_8386217_8386384 78.79 80.77 71.43 84.51 82.28 80.28 85.04 80.33 80.39 77.65 72.53 73.64 75.61 81.97 78.65 76.70 78.12 70.00 77.38 71.33 86.36 86.73 87.18 92.92 84.62 78.79 79.27 89.92 69.64 76.09 69.32 75.36 77.47 79.38 71.76 100.00 83.89 83.82 82.41 80.58 86.67 74.86 75.00 90.36 69.70 69.11 71.67 70.89 71.67 100.00 76.47 82.86 100.00 74.36 79.76 80.28 78.79 71.08 K cassette CG14995,I_chr3L_4095875_4097205,I_chr3L_4096047_4096903 chr3L - chr3L_4098200_4101476 chr3L_4098200_4100779;chr3L_4100846_4101476 chr3L_4100780_4100845 chr3L_4098026_4098199;chr3L_4101477_4102697 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD mys,I_chrX_7958795_7961094 chrX + chrX_7955908_7957872;chrX_7955914_7957872;chrX_7955759_7957872;chrX_7956114_7957872;chrX_7955901_7957872;chrX_7956125_7957872;chrX_7955967_7957872 chrX_7955904_7957872 chrX_7957873_7958492;chrX_7955741_7955758 16.19 18.37 19.62 11.68 11.54 12.75 15.35 9.72 15.72 19.18 16.74 14.41 9.23 14.98 12.09 18.99 12.62 12.50 16.07 10.97 13.45 16.19 23.77 29.26 30.25 12.24 23.95 20.25 11.20 25.57 14.11 16.07 15.63 16.55 25.00 25.79 21.23 18.94 21.36 14.36 16.10 12.52 18.95 16.84 13.22 23.53 32.79 10.94 13.47 30.38 24.49 20.16 24.50 32.76 12.70 32.95 24.06 14.35 K intron_retention mri,RI_chr3L_201061_201173,I_chr3L_212783_212843 chr3L + chr3L_201763_201816 chr3L_201762_201763;chr3L_201816_201817 chr3L_201441_201762;chr3L_201817_202165 92.31 81.82 NA 95.83 NA NA 92.31 90.91 92.86 NA 80.00 90.48 NA NA NA 100.00 NA NA NA 84.62 NA NA 94.44 90.91 100.00 100.00 81.25 100.00 NA NA 83.33 87.50 100.00 90.00 100.00 100.00 83.33 88.89 94.12 NA 92.86 100.00 NA 90.00 NA 100.00 92.31 NA 92.86 93.33 87.50 NA NA 91.67 100.00 92.31 81.82 NA K intron_retention Doa,I_chr3R_24715823_24718923,I_chr3R_24747391_24747896 chr3R + chr3R_24745290_24745946 chr3R_24745289_24745290;chr3R_24745946_24745947 chr3R_24745214_24745289;chr3R_24745947_24746013 0.66 0.79 1.48 2.11 2.20 2.11 10.14 0.66 0.81 0.00 4.23 1.90 1.27 1.60 0.69 1.57 0.00 0.00 1.61 1.20 0.00 0.00 1.01 0.68 0.00 0.00 2.44 0.00 2.78 1.77 0.00 0.00 2.53 1.28 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.44 2.41 0.74 0.00 1.89 0.00 2.04 2.76 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Actn,I_chrX_1929229_1936079,I_chrX_1929235_1930613,I_chrX_1929445_1930439,I_chrX_1929474_1930439,usp,I_chrX_1935420_1935493,I_chrX_1935678_1936079,I_chrX_1935889_1936079 chrX - chrX_1929235_1936079 chrX_1929234_1929235;chrX_1936079_1936080 chrX_1929135_1929234;chrX_1936080_1936110 11.54 17.65 14.29 6.98 15.38 23.53 22.22 8.00 9.52 8.82 37.50 16.67 25.00 20.00 15.38 13.33 NA 13.33 25.00 11.94 15.00 16.22 11.54 10.87 0.00 23.53 7.89 13.33 10.20 1.85 25.00 3.12 5.95 14.71 10.81 14.29 6.45 8.33 8.93 10.94 9.09 16.07 NA 5.26 10.00 12.24 8.33 8.33 17.39 9.68 10.42 16.67 7.14 5.56 17.65 5.71 12.00 5.13 K cassette l(1)G0196,RI_chrX_21900456_21904036,I_chrX_21900456_21904601 chrX + chrX_21900456_21904471 chrX_21900456_21904030;chrX_21904142_21904471 chrX_21904031_21904141 chrX_21900356_21900455;chrX_21904472_21904538 76.67 77.78 69.05 59.57 70.00 75.86 84.44 75.00 78.46 84.62 93.75 60.78 94.44 76.67 76.67 88.37 76.00 81.25 92.31 69.70 96.00 78.57 70.18 73.68 78.26 86.36 73.53 86.67 81.82 81.48 84.44 72.22 84.38 86.96 75.00 50.00 70.97 68.18 63.27 66.67 69.57 77.14 78.26 84.09 95.00 69.57 70.83 77.78 83.56 66.67 68.85 84.00 50.00 71.43 82.22 75.76 75.68 75.00 K intron_retention CG12219 chrX - chrX_6195002_6195067 chrX_6195001_6195002;chrX_6195067_6195068 chrX_6193896_6195001;chrX_6195068_6195314 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 4.55 0.00 0.00 NA 5.88 0.00 0.00 3.64 2.27 0.00 0.00 3.12 0.00 10.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 4.35 0.00 0.00 5.00 NA 0.00 0.00 0.00 0.00 0.00 5.71 1.54 5.26 0.00 0.00 3.57 0.00 0.00 5.26 0.00 K alternative_acceptor mod(r),RI_chrX_515831_515923,I_chrX_516392_517480 chrX + chrX_516392_516478 chrX_516392_516466 chrX_516292_516391;chrX_516479_517065 42.63 63.64 36.36 60.00 55.56 54.55 47.06 39.13 36.36 NA 50.00 46.15 50.00 41.18 43.75 39.13 NA 31.58 46.15 43.33 35.71 44.44 47.06 50.00 55.56 NA 50.00 NA 34.62 30.77 50.00 50.00 31.03 41.67 30.00 NA 43.48 50.00 NA 47.83 40.00 40.62 33.33 50.00 34.48 35.71 33.33 52.63 41.94 33.33 47.06 NA 29.41 41.67 34.78 33.33 44.44 33.33 K intron_retention CG12207,I_chr3R_10115172_10115963,RE_chr3R_10124392_10124511 chr3R + chr3R_10126741_10126949 chr3R_10126740_10126741;chr3R_10126949_10126950 chr3R_10126142_10126740;chr3R_10126950_10127979 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA mub,RI_chr3L_21901021_21901163,I_chr3L_21908756_21909179 chr3L + chr3L_21914088_21914192;chr3L_21914088_21914156;chr3L_21914088_21914141 chr3L_21914088_21914153 chr3L_21914067_21914087;chr3L_21914193_21914427 10.34 NA NA NA NA NA NA NA 10.34 NA NA NA NA NA NA NA NA NA NA 11.54 NA 11.54 8.11 13.64 NA NA NA NA NA 15.00 NA NA 4.17 NA NA NA 7.89 7.41 19.23 12.00 NA 0.00 NA 4.55 NA NA NA 14.29 NA NA 8.33 NA NA NA NA NA NA NA K intron_retention CG10082,E_chr2R_17533874_17544072,RI_chr2R_17537544_17537615,I_chr2R_17541516_17542279,I_chr2R_17541573_17542279,I_chr2R_17543813_17543881 chr2R + chr2R_17540069_17542279 chr2R_17540068_17540069;chr2R_17542279_17542280 chr2R_17539942_17540068;chr2R_17542280_17542379 13.70 14.81 28.00 27.08 5.71 19.57 35.56 21.15 21.90 5.88 13.79 28.05 11.11 29.73 19.64 25.53 13.64 13.16 25.58 24.24 14.89 9.52 7.14 11.76 12.24 23.81 10.34 6.82 5.71 12.77 21.05 12.90 9.26 14.93 8.89 7.89 8.82 9.43 13.70 12.64 34.62 23.08 22.22 12.12 15.38 20.75 10.14 19.44 17.78 11.76 8.05 13.89 6.25 11.11 16.36 7.69 13.46 24.00 K intron_retention rad50,ppk12 chr2R + chr2R_18309244_18309298 chr2R_18309243_18309244;chr2R_18309298_18309299 chr2R_18308554_18309243;chr2R_18309299_18309512 0.00 0.00 0.00 17.07 0.00 0.00 1.82 0.00 3.03 NA 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 5.41 0.00 0.00 0.00 0.00 6.90 3.45 0.00 0.00 2.56 NA 0.00 2.44 0.00 13.64 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 NA 0.00 3.57 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K intron_retention sec63 chr3L + chr3L_7355554_7355621 chr3L_7355553_7355554;chr3L_7355621_7355622 chr3L_7354844_7355553;chr3L_7355622_7356870 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.42 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Cdc37,CG12020 chr3L + chr3L_1796838_1796910 chr3L_1796838_1796901 chr3L_1796769_1796837;chr3L_1796911_1796976 100.00 100.00 100.00 100.00 100.00 99.40 100.00 100.00 100.00 100.00 100.00 99.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.41 100.00 100.00 99.69 99.63 100.00 100.00 99.58 100.00 99.60 100.00 100.00 100.00 99.70 99.69 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.63 100.00 100.00 100.00 100.00 100.00 99.33 100.00 100.00 100.00 99.68 K intron_retention Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4847655_4848167 chrX_4847654_4847655;chrX_4848167_4848168 chrX_4847526_4847654;chrX_4848168_4848168 51.85 NA NA NA NA NA 50.00 63.64 51.85 NA NA 60.00 85.71 72.73 60.00 NA NA NA NA 69.23 NA NA 37.50 42.86 NA NA NA NA NA NA 57.14 NA NA 69.23 NA NA 29.41 45.45 29.41 NA NA 66.67 NA 41.67 NA NA 42.86 NA NA 46.15 33.33 NA NA NA 87.50 NA NA NA K cassette Gel,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_61871_62274 chr3R_61871_61960;chr3R_62004_62274 chr3R_61961_62003 chr3R_61844_61870;chr3R_62275_62526 20.00 NA 20.00 NA NA NA NA NA 30.77 NA NA NA NA NA NA 19.05 NA NA NA 11.43 NA NA NA NA NA NA NA NA NA NA NA NA NA 27.78 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA 9.09 NA NA NA NA NA NA NA NA NA K intron_retention CG2051 chr3R - chr3R_1614436_1614487 chr3R_1614435_1614436;chr3R_1614487_1614488 chr3R_1613934_1614435;chr3R_1614488_1614666 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.97 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 1.06 2.27 2.33 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 1.61 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5006553_5008282 chr2R_5006552_5006553;chr2R_5008282_5008283 chr2R_5006405_5006552;chr2R_5008283_5008324 79.17 82.50 82.35 97.22 84.00 79.17 80.85 80.56 80.30 73.08 81.25 75.44 83.33 88.89 75.76 85.71 96.43 82.61 79.31 78.12 85.19 90.48 76.67 78.57 71.74 96.55 80.56 73.53 71.43 70.97 79.17 73.08 80.39 80.00 71.88 92.11 76.92 67.44 74.47 74.07 85.29 78.18 78.26 77.42 71.43 82.86 66.67 75.00 81.82 81.58 70.73 75.00 84.62 80.00 76.67 76.47 68.57 80.00 K intron_retention CG10082,E_chr2R_17533874_17544072,I_chr2R_17543813_17543881 chr2R + chr2R_17542413_17542474 chr2R_17542412_17542413;chr2R_17542474_17542475 chr2R_17542280_17542412;chr2R_17542475_17542551 0.00 1.92 0.00 0.00 0.00 0.00 2.17 4.84 4.46 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 2.17 0.00 0.93 0.00 0.00 0.00 0.00 0.00 3.28 2.04 3.45 0.00 0.00 7.69 0.00 4.26 2.78 0.00 0.00 0.00 2.27 1.85 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 0.00 2.50 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA cul-2,I_chr2L_21659273_21659499,I_chr2L_21659273_21659705,I_chr2L_21659761_21659839,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21659273_21659839 chr2L_21659273_21659705 chr2L_21659173_21659272;chr2L_21659840_21659939 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.48 1.22 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 1.03 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.69 0.60 0.00 0.00 0.67 0.00 0.00 0.00 0.58 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 K jcn_only_AA CG13923,CG12022 chr3L + chr3L_1803568_1805009 chr3L_1803568_1803794 chr3L_1803433_1803567 69.77 70.83 78.79 70.97 61.76 82.61 52.08 76.79 67.27 NA 55.17 77.59 72.00 75.00 69.77 72.41 79.31 64.00 58.33 71.88 77.27 NA 94.03 63.27 62.50 73.33 25.00 50.00 75.68 82.61 68.00 64.00 65.00 78.05 66.67 65.62 75.44 57.45 73.33 55.93 58.06 72.58 60.00 56.25 78.79 76.47 78.57 69.23 61.22 74.51 63.89 65.62 82.00 68.63 69.44 68.52 73.91 88.00 K alternative_donor RpL28,RI_chr3L_3221710_3221877,I_chr3L_3221982_3222744,snoRNA:Or-CD11c,snoRNA:Or-CD11b chr3L - chr3L_3221982_3222787;chr3L_3221982_3222152;chr3L_3221982_3222574;chr3L_3221982_3222926;chr3L_3221982_3222847 chr3L_3221982_3222365 chr3L_3221882_3221981;chr3L_3222927_3222958 2.36 5.38 1.59 0.57 1.93 1.76 9.59 0.96 3.90 5.49 2.34 4.21 4.92 6.86 0.78 5.22 1.32 1.40 0.44 1.28 1.32 2.36 8.82 11.11 18.42 4.44 19.05 20.29 2.14 1.72 1.17 0.92 0.00 0.91 4.17 5.88 6.12 7.32 6.25 3.14 2.07 1.26 1.09 5.13 0.62 1.72 10.00 0.88 1.52 9.62 4.76 11.36 1.47 5.26 1.08 10.00 10.59 0.62 K intron_retention norpA,I_chrX_4219265_4219380 chrX + chrX_4247647_4247976 chrX_4247646_4247647;chrX_4247976_4247977 chrX_4247500_4247646;chrX_4247977_4248056 23.53 29.41 21.43 64.29 NA NA 52.94 26.92 25.00 NA NA 15.38 NA 30.00 NA 32.00 NA NA 41.67 12.50 NA 12.50 13.79 NA NA NA 22.73 NA 0.00 13.64 17.65 NA 18.52 31.03 12.50 NA 22.22 23.53 18.75 NA NA 32.14 NA 35.71 NA NA NA 15.00 31.03 NA 31.82 NA NA NA 27.27 NA NA NA K jcn_only_AA m-cup chr3R - chr3R_12971775_12971841 chr3R_12971778_12971841 chr3R_12971842_12972385;chr3R_12971649_12971774 100.00 100.00 100.00 100.00 100.00 96.55 100.00 97.14 100.00 NA NA 97.30 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 NA NA 95.45 100.00 95.65 100.00 NA 100.00 NA 96.97 94.74 100.00 100.00 100.00 100.00 98.04 NA 100.00 95.00 100.00 100.00 100.00 100.00 100.00 96.97 95.83 100.00 94.12 100.00 100.00 91.89 NA N intron_retention TSG101 chr3L + chr3L_16835972_16836255 chr3L_16835971_16835972;chr3L_16836255_16836256 chr3L_16835892_16835971;chr3L_16836256_16836333 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG8889 chr2R - chr2R_7914078_7914227 chr2R_7914105_7914227 chr2R_7914228_7914347;chr2R_7914036_7914077 0.00 NA NA 0.00 NA NA 5.56 0.00 0.00 NA NA 0.00 NA NA NA 5.56 NA NA NA 14.29 NA 5.56 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 5.56 NA NA 0.00 NA 0.00 NA NA NA NA 0.00 NA NA K intron_retention CG10359,CG10357 chr3L + chr3L_3613883_3614069 chr3L_3613882_3613883;chr3L_3614069_3614070 chr3L_3613749_3613882;chr3L_3614070_3614253 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.92 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 3.03 10.53 0.00 0.00 0.00 7.14 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 2.38 NA NA 0.00 0.00 0.00 0.00 5.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 3.85 0.00 NA NA 3.85 5.88 7.14 0.00 K jcn_only_AA kis,RI_chr2L_242745_242800,I_chr2L_242926_250756 chr2L - chr2L_242563_250756 chr2L_242745_250756 chr2L_250757_250774;chr2L_242508_242562 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 98.68 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA 100.00 NA 100.00 98.21 NA NA 100.00 NA NA 96.97 NA 100.00 95.65 85.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA NA K intron_retention CG8494 chr2R + chr2R_10127619_10127715 chr2R_10127618_10127619;chr2R_10127715_10127716 chr2R_10127505_10127618;chr2R_10127716_10128082 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 19.05 NA NA NA NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA NA NA K jcn_only_AA ald chr3R + chr3R_13499199_13499298 chr3R_13499199_13499270 chr3R_13498643_13499198;chr3R_13499299_13499550 5.69 3.51 7.89 11.11 6.45 7.41 0.00 2.63 10.53 NA 19.05 4.35 4.35 0.00 5.41 7.14 0.00 11.11 6.45 11.96 6.06 4.76 6.35 14.29 0.00 6.90 6.82 3.03 5.41 21.43 0.00 11.36 12.77 5.66 2.56 0.00 1.79 2.70 3.51 4.92 3.33 4.35 10.00 5.71 2.00 8.62 12.50 5.71 4.17 1.41 6.06 10.34 0.00 12.73 6.67 5.56 6.25 4.08 K jcn_only_AA CG5446,I_chr2L_12427370_12427468 chr2L - chr2L_12427370_12427468 chr2L_12427388_12427468 chr2L_12427469_12427568;chr2L_12427270_12427369 99.51 99.72 99.64 99.79 99.50 99.55 99.23 99.54 99.69 99.04 100.00 99.56 100.00 98.82 100.00 98.70 99.03 100.00 100.00 99.17 99.63 99.53 99.41 99.51 99.21 100.00 98.81 99.60 98.12 99.68 98.22 98.50 99.51 100.00 99.61 99.24 99.13 99.48 99.54 99.39 99.42 99.42 100.00 99.76 99.18 99.79 99.28 98.97 99.61 99.72 99.24 99.51 99.73 99.52 99.68 99.25 99.19 99.34 K alternative_acceptor dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21308996_21309579;chr2L_21309092_21309579;chr2L_21309084_21309579 chr2L_21309019_21309579 chr2L_21309580_21309679;chr2L_21308992_21308995 3.85 NA NA 0.00 NA NA 14.29 12.50 12.50 NA NA NA NA NA NA 7.69 16.67 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA 9.09 0.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG2698,I_chr3R_3828169_3828941,I_chr3R_3828880_3828941,I_chr3R_3829483_3829715,I_chr3R_3830586_3830981 chr3R + chr3R_3829483_3829697;chr3R_3829483_3829555;chr3R_3829483_3829709 chr3R_3829483_3829721 chr3R_3829383_3829482;chr3R_3829722_3829815 17.31 21.95 16.67 22.22 26.92 14.29 14.29 20.59 12.68 11.11 14.29 13.04 5.88 21.62 17.65 18.33 16.00 0.00 15.69 16.05 15.15 14.29 18.75 24.56 15.91 14.29 19.44 18.52 16.13 17.95 20.29 15.38 7.89 21.54 18.42 10.64 22.50 20.45 14.29 18.99 9.52 20.45 17.50 20.69 30.77 11.11 15.15 12.31 8.11 22.03 23.81 15.00 28.57 18.42 21.15 17.31 34.00 4.26 K alternative_donor mld chr3R + chr3R_20415112_20416293 chr3R_20415155_20416293 chr3R_20416294_20417143;chr3R_20415078_20415111 80.00 85.71 85.71 66.67 NA NA 75.00 84.62 77.27 NA NA 77.78 85.71 85.71 NA 58.33 80.00 85.71 58.33 90.00 NA NA 88.89 85.71 NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA 77.78 NA 64.71 75.00 75.00 NA NA NA NA 91.67 NA NA NA NA NA 72.73 NA NA NA K intron_retention pod1 chrX + chrX_6697800_6699710 chrX_6697799_6697800;chrX_6699710_6699711 chrX_6697759_6697799;chrX_6699711_6700251 0.00 0.00 0.00 2.90 0.00 0.00 4.65 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.97 0.00 5.13 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 3.23 2.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 3.23 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2389073;chrX_2389272_2389644;chrX_2389762_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2395659 chrX_2387584_2387709;chrX_2388437_2388670;chrX_2389074_2389271;chrX_2389645_2389761;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2395660_2395759 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.75 0.59 0.00 0.00 2.20 0.00 0.00 1.11 0.00 0.00 0.00 1.22 0.99 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 1.01 0.76 0.00 0.00 1.12 0.00 1.25 0.99 0.00 0.73 0.00 1.39 0.00 0.00 NA 0.78 0.56 0.00 0.00 0.00 0.00 NA 1.02 0.00 0.00 0.00 K intron_retention Mi-2,Su(Tpl),F_chr3L_19887973_19889888 chr3L - chr3L_19889948_19890011 chr3L_19889947_19889948;chr3L_19890011_19890012 chr3L_19889898_19889947;chr3L_19890012_19890026 10.41 21.43 NA 13.79 NA NA 10.64 21.88 10.17 0.00 0.00 17.86 5.56 NA NA 11.76 NA NA NA 19.05 NA 37.50 7.69 9.09 7.69 NA 12.50 22.22 17.65 NA NA NA 18.52 3.33 17.65 4.35 14.81 6.25 NA 0.00 NA 9.68 NA 7.41 NA 5.88 NA 15.15 15.38 14.29 9.09 0.00 NA NA NA NA NA 0.00 K jcn_only_AD eIF-5A,I_chr2R_19945430_19946454,I_chr2R_19945576_19946006,I_chr2R_19945723_19946006,I_chr2R_19945783_19946006,I_chr2R_19945852_19946006,I_chr2R_19945875_19946006,I_chr2R_19945921_19946006,I_chr2R_19946299_19946454,I_chr2R_19946657_19946733,I_chr2R_19948517_19948682 chr2R + chr2R_19945921_19946006;chr2R_19945426_19946006;chr2R_19945875_19946006;chr2R_19945430_19946006 chr2R_19945576_19946006 chr2R_19946007_19946106;chr2R_19945343_19945425 0.00 0.00 0.00 0.02 0.07 0.00 0.05 0.03 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.02 0.05 0.00 0.00 0.01 0.03 0.00 0.06 0.00 0.10 0.00 0.10 0.19 0.13 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.04 0.04 0.07 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.01 0.00 0.17 0.00 0.03 0.08 0.02 0.08 0.04 0.00 K intron_retention Abl,I_chr3L_16622304_16639909,RI_chr3L_16652567_16654512 chr3L - chr3L_16618375_16619372 chr3L_16618374_16618375;chr3L_16619372_16619373 chr3L_16616737_16618374;chr3L_16619373_16619430 41.67 NA 41.67 35.85 NA NA 46.67 56.25 60.00 NA 14.29 33.33 41.67 70.00 50.00 64.71 NA NA 52.63 46.15 NA 31.03 40.00 NA 23.08 12.50 35.00 NA 14.29 38.89 66.67 NA 26.09 56.25 46.15 26.09 25.00 NA 41.67 50.00 41.18 62.50 NA 28.57 NA NA NA NA 62.50 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG31431 chr3R + chr3R_17696730_17697680;chr3R_17696730_17697693 chr3R_17696730_17697703 chr3R_17696406_17696729;chr3R_17697704_17697862 90.21 89.91 91.80 89.64 89.58 90.74 87.70 92.89 91.94 97.30 91.07 91.09 93.14 93.75 91.24 89.35 89.25 90.55 90.91 91.35 94.51 93.18 86.96 89.58 87.21 86.02 86.09 88.52 84.85 90.70 88.35 90.20 91.21 90.91 88.89 90.48 89.89 89.09 91.92 90.83 92.54 89.35 87.80 89.26 98.28 89.90 89.61 92.11 90.21 88.06 89.74 91.09 86.05 92.16 88.81 91.36 89.33 91.38 K jcn_only_AA MED10,I_chr3L_16225377_16225479 chr3L + chr3L_16225424_16225485 chr3L_16225424_16225479 chr3L_16225129_16225423;chr3L_16225486_16225579 100.00 100.00 100.00 98.54 100.00 98.44 98.37 99.39 99.32 100.00 98.41 98.48 100.00 100.00 99.02 99.07 100.00 97.30 100.00 98.70 98.53 100.00 100.00 97.85 97.83 98.13 97.78 98.61 100.00 98.75 100.00 98.18 100.00 99.24 100.00 98.39 100.00 100.00 98.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.72 100.00 100.00 100.00 97.65 100.00 100.00 100.00 100.00 K intron_retention CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25318474_25319136 chr3R_25318473_25318474;chr3R_25319136_25319137 chr3R_25318374_25318473;chr3R_25319137_25319162 47.16 47.37 50.00 55.56 33.33 39.29 62.50 37.50 38.89 41.67 66.67 43.90 NA 36.84 27.27 68.42 61.90 33.33 33.33 42.55 68.75 42.86 52.83 50.00 50.00 59.09 46.94 47.37 48.72 54.55 50.00 55.56 52.00 52.63 50.00 48.15 39.47 45.95 31.51 40.91 50.00 40.43 42.86 48.15 34.69 51.11 32.35 64.10 38.10 35.90 41.67 40.62 54.55 41.86 32.00 51.28 45.16 50.00 K intron_retention CG18317,RI_chr2L_1718492_1723881 chr2L - chr2L_1718152_1718226 chr2L_1718151_1718152;chr2L_1718226_1718227 chr2L_1717878_1718151;chr2L_1718227_1718358 0.00 0.00 0.00 7.14 0.00 0.00 6.52 0.00 3.30 4.29 0.00 1.59 0.00 6.06 0.00 0.00 0.00 0.00 9.68 6.85 0.00 24.39 5.77 3.17 6.67 0.00 8.70 10.14 15.87 0.00 0.00 0.00 4.17 5.71 6.06 0.00 0.00 0.00 2.53 5.77 0.00 5.71 0.00 1.75 0.00 3.12 0.00 3.17 5.71 6.82 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD phtf,I_chr2R_2629598_2630209 chr2R + chr2R_2632042_2632103 chr2R_2632045_2632103 chr2R_2632104_2632282;chr2R_2631158_2632041 100.00 100.00 100.00 100.00 NA 100.00 95.83 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA NA 100.00 NA 100.00 96.30 100.00 100.00 100.00 96.43 100.00 97.62 NA 97.73 100.00 100.00 100.00 100.00 100.00 100.00 97.87 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG34263 chr3L - chr3L_265642_265697 chr3L_265641_265642;chr3L_265697_265698 chr3L_265617_265641;chr3L_265698_265908 50.00 50.00 NA 19.05 NA NA 80.95 40.00 65.38 NA 84.62 37.50 72.73 NA NA 45.45 46.15 NA 35.71 24.00 80.00 NA NA NA NA NA 54.55 NA NA NA NA NA NA 52.94 NA NA 77.78 NA NA 50.00 NA 43.75 NA NA NA 50.00 NA NA 50.00 NA 46.15 NA NA NA 31.25 NA 29.41 NA K jcn_only_AA CG16971,I_chr3L_225856_225909,I_chr3L_225919_225983,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_225919_226219;chr3L_225919_225983 chr3L_225919_226004 chr3L_225910_225918;chr3L_226220_226256 45.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 45.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Ser,I_chr3R_23013597_23017227 chr3R - chr3R_23009585_23013408 chr3R_23009584_23009585;chr3R_23013408_23013409 chr3R_23009530_23009584;chr3R_23013409_23013596 0.00 0.00 0.00 0.00 0.00 NA 14.81 12.50 0.00 NA 0.00 5.13 0.00 0.00 0.00 6.67 0.00 8.00 0.00 0.00 NA 0.00 0.00 3.45 0.00 0.00 0.00 NA NA 0.00 0.00 NA 5.26 5.71 NA 0.00 3.92 0.00 0.00 0.00 0.00 2.22 0.00 5.13 0.00 0.00 6.67 2.44 4.26 6.67 0.00 0.00 0.00 NA 0.00 0.00 NA 5.88 K alternative_donor CG11722,RI_chr3R_5873666_5874292 chr3R - chr3R_5870477_5870538 chr3R_5870477_5870534 chr3R_5870318_5870476;chr3R_5870539_5870781 90.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA 87.50 K cassette SWAP,RI_chrX_936466_936762,I_chrX_936466_936835,RI_chrX_936919_937245,RI_chrX_938935_938985,I_chrX_941459_982652 chrX + chrX_936466_937245 chrX_936466_936762;chrX_936919_937245 chrX_936763_936918 chrX_936366_936465;chrX_937246_937345 26.09 19.05 22.22 27.78 14.29 11.11 55.56 40.91 31.25 25.00 NA 21.88 71.43 44.44 33.33 46.15 27.27 15.38 61.54 26.09 NA 35.71 31.58 18.18 18.18 NA 25.00 NA 26.32 16.67 42.86 28.57 13.95 29.63 30.77 13.33 10.53 26.32 21.05 24.24 20.00 22.58 33.33 35.71 31.25 19.05 20.00 21.05 18.52 26.09 23.81 42.86 30.77 20.00 35.71 14.29 30.00 13.33 K intron_retention CG32549,I_chrX_18286289_18286367,RI_chrX_18301919_18303082 chrX - chrX_18298427_18298506 chrX_18298426_18298427;chrX_18298506_18298507 chrX_18298018_18298426;chrX_18298507_18298596 65.71 65.28 77.61 73.33 81.82 74.51 81.44 82.50 75.18 47.50 63.83 66.33 68.89 77.27 69.01 65.71 79.07 79.07 69.70 63.64 78.85 27.75 57.14 46.23 62.22 88.64 65.33 65.26 61.70 45.76 65.62 58.82 75.00 76.47 65.62 84.31 36.28 45.83 52.38 66.67 72.41 66.67 70.59 41.57 70.00 62.07 57.63 65.22 77.06 55.26 56.58 57.38 77.78 62.86 68.33 48.28 62.50 75.00 K cassette Crag,I_chrX_8494280_8494352 chrX + chrX_8491748_8493063 chrX_8491748_8492106;chrX_8492188_8493063 chrX_8492107_8492187 chrX_8491445_8491747;chrX_8493064_8493496 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.93 0.00 0.00 1.18 0.42 0.00 0.00 0.00 0.61 1.05 1.19 0.00 0.00 0.83 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 1.11 0.85 0.00 0.00 0.00 0.00 K intron_retention CG1103 chr3R + chr3R_164975_165034 chr3R_164974_164975;chr3R_165034_165035 chr3R_164766_164974;chr3R_165035_165640 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.38 100.00 100.00 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.03 100.00 100.00 100.00 100.00 99.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.46 100.00 98.68 100.00 100.00 K jcn_only_AD CG6707 chr3L - chr3L_9891303_9891622 chr3L_9891303_9891543 chr3L_9891029_9891302;chr3L_9891623_9891693 2.70 2.08 2.08 5.77 5.13 0.00 5.00 1.04 4.69 2.56 4.55 2.70 9.80 2.70 6.06 3.45 2.99 8.00 1.61 2.08 2.70 0.00 0.00 3.28 2.70 6.98 2.38 0.00 2.08 0.00 3.92 6.06 7.55 4.26 4.00 0.00 3.70 0.00 2.50 1.94 3.03 0.82 3.03 0.00 0.00 2.78 0.00 3.03 4.76 0.00 2.33 0.00 0.00 NA 4.48 0.00 2.86 5.26 K alternative_donor Ten-a chrX + chrX_12097912_12098171;chrX_12098018_12098171;chrX_12098012_12098171;chrX_12098030_12098171 chrX_12097945_12098171 chrX_12098172_12098306;chrX_12097907_12097911 0.00 NA 0.00 NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention CycA chr3L - chr3L_11821493_11821560 chr3L_11821492_11821493;chr3L_11821560_11821561 chr3L_11821288_11821492;chr3L_11821561_11821781 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6838,I_chr3L_22709306_22709668 chr3L - chr3L_22710167_22710293 chr3L_22710166_22710167;chr3L_22710293_22710294 chr3L_22710071_22710166;chr3L_22710294_22710303 95.74 97.83 100.00 97.40 94.74 98.15 97.53 92.05 92.79 90.70 89.36 93.14 94.23 97.62 91.18 90.67 92.50 95.24 91.67 96.08 97.67 89.83 98.33 93.75 97.67 98.61 97.01 91.30 98.61 100.00 95.31 98.28 97.27 93.02 95.24 98.33 88.33 89.47 89.89 94.57 98.72 93.33 97.83 96.43 96.30 98.85 95.92 97.30 93.81 98.36 94.92 95.74 92.00 95.74 93.94 93.02 97.10 99.15 K mutually_exclusive Eb1,RI_chr2R_2640290_2642206,I_chr2R_2640494_2642206,I_chr2R_2641187_2642206,RI_chr2R_2641944_2642025,I_chr2R_2641954_2642206,I_chr2R_2642491_2642549 chr2R + chr2R_2640494_2641684,chr2R_2641944_2642209 chr2R_2640494_2640577,chr2R_2641009_2642209 chr2R_2641685_2641943 chr2R_2640578_2641008 chr2R_2640394_2640493;chr2R_2642210_2642306 12.73 9.68 4.76 12.00 9.52 10.00 18.52 13.79 9.43 19.05 15.79 16.67 27.27 18.18 13.79 19.23 20.00 9.52 14.29 4.17 15.00 18.92 7.14 5.71 25.00 10.00 18.18 16.67 6.67 13.79 32.14 17.86 7.50 9.38 21.43 21.74 5.56 9.68 20.59 9.76 11.54 12.73 10.53 15.38 10.00 8.11 9.38 12.73 9.52 7.14 17.95 21.43 4.17 9.09 26.09 12.90 15.79 6.25 K jcn_only_AD Roughened,I_chr3L_1861677_1861777,I_chr3L_1861677_1861929,I_chr3L_1861677_1862177 chr3L - chr3L_1861677_1861777;chr3L_1861677_1862177 chr3L_1861677_1862060 chr3L_1861577_1861676;chr3L_1862178_1862277 99.57 98.60 99.34 99.30 100.00 98.92 99.74 99.40 99.49 100.00 98.98 99.60 98.98 99.35 100.00 100.00 99.59 99.38 99.08 99.67 100.00 98.99 100.00 100.00 100.00 100.00 99.67 100.00 98.89 99.68 98.81 100.00 99.49 98.45 98.74 99.81 99.38 100.00 99.58 98.35 99.78 99.13 99.04 98.64 98.39 99.72 100.00 99.67 99.25 100.00 99.49 99.57 99.38 99.63 99.04 99.67 100.00 99.36 K alternative_donor CG13933,I_chr3L_1773911_1773984 chr3L - chr3L_1772319_1772487 chr3L_1772319_1772479 chr3L_1772022_1772318;chr3L_1772488_1773369 87.50 77.78 91.67 94.74 100.00 70.00 68.75 100.00 82.35 NA NA 70.59 70.00 NA 88.89 80.00 88.89 84.62 84.62 95.45 60.00 88.89 87.50 100.00 90.00 90.00 83.33 NA 90.91 81.82 80.00 NA 81.82 85.71 NA NA 90.00 NA 88.89 91.67 87.50 93.33 100.00 NA 100.00 80.00 91.67 85.71 89.47 72.73 85.71 NA NA 88.89 84.62 81.82 100.00 60.00 K intron_retention fry,I_chr3L_9636648_9656042 chr3L - chr3L_9657112_9657176 chr3L_9657111_9657112;chr3L_9657176_9657177 chr3L_9656962_9657111;chr3L_9657177_9657344 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3L_12398261_12403200,Gap69C chr3L - chr3L_12408970_12409044 chr3L_12408969_12408970;chr3L_12409044_12409045 chr3L_12408095_12408969;chr3L_12409045_12409104 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 2.60 0.00 0.00 1.89 0.00 0.00 0.00 0.00 9.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 3.39 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 5.56 0.00 0.00 0.00 K jcn_only_AA CG32626 chrX - chrX_13728240_13728847;chrX_13727065_13728847 chrX_13727056_13728847 chrX_13728848_13729182 44.23 41.79 43.97 42.86 32.32 36.05 42.62 41.09 39.85 50.50 44.23 51.18 40.24 47.52 33.33 43.75 44.35 49.52 41.51 36.72 29.82 51.52 48.57 52.26 43.18 36.99 49.77 49.76 49.57 59.83 33.66 52.63 54.40 40.78 42.96 47.69 48.48 46.51 48.30 42.35 50.63 40.71 40.66 43.63 52.63 47.17 50.54 57.58 43.17 54.46 45.42 36.84 47.37 43.51 36.84 46.63 53.09 42.37 K jcn_only_AD CG7580,I_chr3L_17468694_17468750,I_chr3L_17468699_17468750 chr3L + chr3L_17468695_17468750 chr3L_17468699_17468750 chr3L_17468751_17468850;chr3L_17468599_17468694 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.14 0.13 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.15 0.00 0.00 0.06 0.13 0.05 0.12 0.00 K alternative_donor Rab5,I_chr2L_2361586_2364794 chr2L - chr2L_2360394_2360459 chr2L_2360394_2360455 chr2L_2359546_2360393;chr2L_2360460_2360569 96.15 100.00 91.67 93.48 96.30 93.33 97.44 93.75 91.92 100.00 100.00 91.36 95.24 96.00 93.48 95.29 97.22 96.43 98.08 94.20 96.15 95.65 96.55 97.96 96.55 100.00 87.80 91.67 100.00 100.00 97.73 100.00 92.86 95.77 96.15 100.00 96.43 96.43 85.71 96.88 95.45 92.39 90.00 100.00 94.12 97.06 97.44 90.00 93.69 97.22 100.00 94.44 95.00 95.45 95.83 97.96 98.04 95.45 K jcn_only_AA Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911803_5913333;chr2R_5911755_5913333 chr2R_5911708_5913333 chr2R_5913334_5913352;chr2R_5911703_5911707 50.00 NA NA NA NA NA NA 54.17 36.84 NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 52.38 NA NA NA NA 40.00 NA NA NA NA NA NA 50.00 NA NA NA NA NA 33.33 NA NA NA N jcn_only_AA CG8790 chr3R + chr3R_9190952_9191016;chr3R_9190952_9193285;chr3R_9190952_9193295 chr3R_9190952_9193460 chr3R_9190661_9190951 100.00 100.00 100.00 99.33 100.00 100.00 100.00 100.00 100.00 100.00 82.35 98.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.32 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.02 98.78 99.32 100.00 100.00 99.35 100.00 100.00 100.00 98.80 100.00 100.00 100.00 100.00 100.00 K alternative_donor Uev1A,I_chr3L_5358186_5358359,I_chr3L_5358186_5358415,CREI_chr3L_5358186_5358453,I_chr3L_5358186_5359072,RI_chr3L_5358186_5359074,I_chr3L_5360875_5360954 chr3L - chr3L_5358186_5359228 chr3L_5358186_5358453 chr3L_5358086_5358185;chr3L_5359229_5359418 0.77 0.51 0.34 0.50 0.00 0.37 0.56 0.71 0.34 0.71 0.30 1.73 0.37 0.79 0.56 0.60 0.31 0.34 0.34 0.27 0.31 1.06 1.46 0.56 0.79 0.36 1.68 1.63 1.18 1.43 0.96 0.85 1.80 0.77 2.44 3.85 0.22 0.53 0.33 1.55 3.92 0.44 0.43 0.72 0.92 3.12 1.45 2.80 0.79 1.23 2.82 0.62 0.81 2.70 0.50 0.83 0.84 1.11 K alternative_donor CG2258,I_chrX_7993650_7995126,I_chrX_7994188_7995101 chrX - chrX_7990868_7990987 chrX_7990868_7990933 chrX_7990737_7990867;chrX_7990988_7991072 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA 100.00 100.00 NA 100.00 NA NA NA 100.00 100.00 100.00 NA NA NA NA NA NA NA NA NA NA N alternative_acceptor RpL39,I_chr2R_19949515_19949720 chr2R - chr2R_19949805_19949910 chr2R_19949825_19949910 chr2R_19949911_19950046;chr2R_19949721_19949804 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD I_chr2L_476332_525391,ush chr2L + chr2L_539247_539309 chr2L_539250_539309 chr2L_539310_539452;chr2L_537863_539246 99.66 98.73 98.91 97.52 100.00 100.00 100.00 99.22 98.88 100.00 100.00 100.00 100.00 100.00 100.00 98.28 98.55 100.00 98.97 99.66 98.65 99.15 99.59 99.47 100.00 98.77 100.00 100.00 100.00 99.34 100.00 100.00 100.00 100.00 100.00 99.34 99.52 100.00 100.00 99.55 99.39 99.39 98.46 99.50 100.00 98.78 100.00 100.00 100.00 99.53 100.00 100.00 99.33 98.63 99.22 100.00 98.08 99.14 K cassette CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21263124_21273323 chr2L_21263124_21263722;chr2L_21263787_21273323 chr2L_21263723_21263786 chr2L_21262988_21263123;chr2L_21273324_21273463 95.00 91.67 100.00 94.74 90.91 92.31 84.00 95.24 96.77 100.00 91.67 95.83 100.00 92.86 91.67 100.00 100.00 85.71 100.00 100.00 90.00 100.00 95.00 93.75 100.00 100.00 90.91 100.00 91.67 100.00 100.00 85.71 93.33 95.45 100.00 100.00 100.00 100.00 90.00 91.30 100.00 96.00 91.67 93.33 85.71 86.67 NA 86.96 88.00 100.00 100.00 100.00 100.00 NA 87.50 90.00 90.00 93.33 K alternative_donor CG4502,I_chr2L_7196721_7196787,I_chr2L_7196858_7204207 chr2L - chr2L_7196858_7203938;chr2L_7196858_7203942 chr2L_7196858_7203934 chr2L_7196788_7196857;chr2L_7203943_7204239 25.00 25.00 21.43 21.05 16.67 23.08 28.57 23.81 24.14 NA 14.29 27.78 16.67 26.67 25.00 25.00 20.00 36.36 28.57 26.32 22.22 NA 26.67 33.33 NA 33.33 11.11 NA 33.33 25.00 15.38 28.57 23.08 25.00 25.00 27.27 NA NA 37.50 7.14 20.00 17.39 28.57 25.00 NA 17.65 28.57 26.09 35.00 28.57 18.18 22.22 NA NA 15.79 33.33 NA 33.33 K intron_retention CG7843,I_chr2R_1972736_1972822 chr2R - chr2R_1968921_1969240 chr2R_1968920_1968921;chr2R_1969240_1969241 chr2R_1968863_1968920;chr2R_1969241_1969345 0.00 0.00 0.00 10.81 0.00 0.00 8.33 0.00 1.14 0.00 0.00 6.02 4.17 0.00 2.17 5.13 0.00 3.70 4.76 3.16 0.00 3.03 1.15 3.12 0.00 2.63 3.77 7.55 0.00 4.26 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 2.35 0.00 4.17 1.41 0.00 3.33 0.00 1.69 2.90 0.00 4.41 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 2.47 K intron_retention Ssb-c31a,CG8360 chr2L + chr2L_8211503_8211558 chr2L_8211502_8211503;chr2L_8211558_8211559 chr2L_8211377_8211502;chr2L_8211559_8211958 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.67 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 K alternative_donor Pax,RI_chr2L_19404683_19426205,RI_chr2L_19404823_19409403,I_chr2L_19419985_19423267,I_chr2L_19419985_19423278,I_chr2L_19419985_19423414,I_chr2L_19420081_19423267,I_chr2L_19420081_19423278 chr2L - chr2L_19420192_19423267;chr2L_19420192_19423414 chr2L_19420192_19423278 chr2L_19420186_19420191;chr2L_19423415_19423487 37.98 37.50 50.00 37.50 NA 25.00 45.45 28.57 20.00 NA NA 40.00 NA NA 33.33 38.46 NA NA 33.33 40.00 NA 40.00 30.00 40.00 NA NA NA 50.00 NA 41.67 28.57 NA 50.00 30.77 44.44 50.00 NA 0.00 NA 33.33 NA 42.86 NA 60.00 NA 50.00 16.67 37.50 30.00 NA 28.57 NA NA NA 33.33 40.00 NA 40.00 K jcn_only_AA CG6425 chr3R - chr3R_22542850_22542919 chr3R_22542861_22542919 chr3R_22542920_22542946;chr3R_22541838_22542849 98.48 100.00 100.00 97.83 100.00 96.67 96.67 97.73 96.61 NA 96.15 93.02 100.00 96.43 95.00 100.00 100.00 97.50 100.00 98.00 100.00 97.06 100.00 100.00 100.00 100.00 97.22 100.00 96.67 100.00 95.83 NA 100.00 100.00 100.00 100.00 97.73 96.43 100.00 93.62 NA 97.67 96.15 100.00 NA 100.00 97.14 NA 98.48 96.00 97.37 100.00 100.00 97.30 96.67 100.00 100.00 NA K jcn_only_AA Hph,I_chr3R_1092755_1092819 chr3R + chr3R_1092755_1092842 chr3R_1092755_1092819 chr3R_1092655_1092754;chr3R_1092843_1092919 0.00 1.65 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.83 0.00 0.00 0.00 2.03 0.00 0.32 0.00 0.92 0.81 0.00 0.00 0.76 1.10 7.14 0.79 0.87 0.00 0.00 0.00 0.56 0.00 1.33 0.00 0.00 0.00 0.00 0.74 0.38 1.15 0.75 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 K intron_retention CG6353 chr3R - chr3R_17488466_17488531 chr3R_17488465_17488466;chr3R_17488531_17488532 chr3R_17488441_17488465;chr3R_17488532_17488664 0.00 NA 7.41 11.76 0.00 0.00 5.88 3.23 7.69 12.50 0.00 0.00 0.00 0.00 0.00 3.23 NA 0.00 0.00 6.85 0.00 0.00 8.33 NA NA 12.50 3.70 10.00 10.81 0.00 0.00 8.33 0.00 5.71 NA 0.00 NA 0.00 7.41 0.00 6.67 4.76 NA 0.00 5.71 0.00 5.00 0.00 0.00 0.00 12.50 6.67 0.00 0.00 0.00 8.33 5.71 0.00 K alternative_acceptor I_chr3R_8822346_8822403,CG7518 chr3R + chr3R_8832937_8833246 chr3R_8832937_8833113 chr3R_8832068_8832936;chr3R_8833247_8833436 1.59 3.09 1.52 3.19 1.82 0.00 2.78 2.06 2.33 0.00 3.77 1.85 4.00 4.08 0.00 5.88 0.00 1.92 1.59 1.06 1.49 3.06 1.44 1.77 3.77 2.50 1.16 1.59 1.12 0.86 1.59 2.38 0.00 3.37 2.90 0.00 1.23 0.88 0.81 1.18 1.98 2.17 2.44 0.72 0.00 0.70 0.81 0.00 2.56 3.05 1.74 1.56 1.00 2.33 1.47 0.00 0.00 0.00 K jcn_only_AD CG6923 chr3R - chr3R_7574682_7575419 chr3R_7574682_7574963 chr3R_7574512_7574681;chr3R_7575420_7575455 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 96.00 100.00 NA 100.00 97.06 NA NA NA 96.55 NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA 90.62 NA NA NA NA 95.65 93.94 NA 94.12 NA NA NA NA NA NA 95.45 NA 96.67 NA NA NA NA NA NA NA K intron_retention Trc8 chr3R - chr3R_25327211_25327424 chr3R_25327210_25327211;chr3R_25327424_25327425 chr3R_25326673_25327210;chr3R_25327425_25327995 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention CG32529 chrX + chrX_19795641_19795900 chrX_19795640_19795641;chrX_19795900_19795901 chrX_19795580_19795640;chrX_19795901_19798251 53.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 53.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG10103,noncoding_10997 chr3L - chr3L_6747594_6748172;chr3L_6747594_6748046;chr3L_6747594_6748519 chr3L_6747594_6747844;chr3L_6747908_6748519,chr3L_6747908_6748046,chr3L_6747908_6748172 chr3L_6747845_6747907 chr3L_6747493_6747593;chr3L_6748520_6749258 30.36 31.03 25.00 21.05 28.95 26.88 8.55 27.66 29.30 37.93 33.33 41.22 29.41 17.86 27.59 28.26 30.91 34.92 35.29 26.55 35.14 48.15 36.08 41.38 34.78 22.99 36.70 37.04 12.35 29.91 32.17 32.67 30.30 27.87 28.89 27.12 33.33 30.56 33.04 27.35 27.78 35.59 22.37 35.71 20.25 29.66 37.23 27.07 27.61 34.01 41.00 38.46 22.83 35.87 30.36 35.00 35.48 26.71 K jcn_only_AA CG10462 chr2L - chr2L_19734410_19734469;chr2L_19734413_19734469 chr2L_19734281_19734469 chr2L_19734470_19734941;chr2L_19733639_19734280 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1161,I_chr3R_1182079_1182146 chr3R + chr3R_1181851_1181905 chr3R_1181850_1181851;chr3R_1181905_1181906 chr3R_1181725_1181850;chr3R_1181906_1181931 100.00 100.00 97.06 100.00 100.00 100.00 97.67 100.00 98.59 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 97.96 100.00 99.12 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 96.30 100.00 97.62 100.00 100.00 100.00 100.00 95.45 100.00 100.00 98.11 100.00 100.00 100.00 K intron_retention Gdi chr2L - chr2L_9492546_9492627 chr2L_9492545_9492546;chr2L_9492627_9492628 chr2L_9491177_9492545;chr2L_9492628_9493103 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.67 0.00 0.00 0.39 0.00 0.96 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.23 0.19 0.22 0.00 0.00 0.36 0.00 0.45 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.14 0.00 0.00 0.45 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 K intron_retention CG10962,E_chrX_8871490_8871566,E_chrX_8871690_8873486 chrX - chrX_8867414_8867687 chrX_8867413_8867414;chrX_8867687_8867688 chrX_8866946_8867413;chrX_8867688_8868437 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 1.14 1.43 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.53 0.43 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.61 1.16 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7718 chr3R - chr3R_14570393_14570450 chr3R_14570392_14570393;chr3R_14570450_14570451 chr3R_14569781_14570392;chr3R_14570451_14571793 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 20.00 11.11 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention rho-7,noncoding_6143 chr2R - chr2R_7875007_7875506 chr2R_7875006_7875007;chr2R_7875506_7875507 chr2R_7874791_7875006;chr2R_7875507_7875801 2.13 5.56 0.00 15.62 0.00 0.00 3.92 6.90 2.50 0.00 6.25 5.56 5.41 5.71 2.13 0.00 0.00 5.26 0.00 3.74 0.00 0.00 0.00 3.03 2.13 6.67 3.57 0.00 4.76 1.59 1.54 0.00 2.25 7.41 0.00 5.56 0.00 0.00 0.00 1.41 4.76 4.35 0.00 0.00 2.90 7.25 0.00 3.57 5.71 0.00 2.82 0.00 2.00 3.64 4.26 0.00 3.90 1.19 K jcn_only_AD I_chr3R_17177101_17200781,mod(mdg4) chr3R - chr3R_17182691_17200781 chr3R_17182691_17182836 chr3R_17182533_17182690 19.14 NA NA NA NA NA NA NA 13.64 NA NA 25.00 NA NA NA NA NA NA NA 4.35 NA NA NA NA NA NA NA NA NA NA NA 9.52 NA 16.00 NA NA NA NA NA NA NA 19.05 NA NA 28.00 19.23 NA 15.62 20.00 NA NA NA NA NA 21.74 NA NA 22.73 K intron_retention Tsp42El chr2R + chr2R_2933519_2934781 chr2R_2933518_2933519;chr2R_2934781_2934782 chr2R_2933211_2933518;chr2R_2934782_2934940 0.00 0.00 0.00 2.27 0.00 0.00 0.00 3.85 4.17 NA NA 0.00 0.00 4.76 3.85 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA 4.17 0.00 0.00 NA NA NA NA 3.12 NA NA NA NA NA 0.00 NA NA NA K intron_retention Chit chr2R + chr2R_12580429_12580490 chr2R_12580428_12580429;chr2R_12580490_12580491 chr2R_12579853_12580428;chr2R_12580491_12581291 0.05 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.06 0.15 0.00 0.10 0.03 0.05 0.00 0.05 0.00 0.00 0.00 0.05 0.00 0.00 0.08 0.10 0.00 0.04 0.12 0.00 0.08 0.08 0.00 0.07 0.00 0.00 0.18 0.00 0.06 0.00 0.09 0.11 0.12 0.00 0.05 0.10 0.06 0.00 0.05 0.07 0.02 0.18 0.05 0.09 0.08 0.11 0.04 0.00 0.06 0.06 K intron_retention CG4199,I_chrX_1962457_1964222 chrX - chrX_1965614_1967409 chrX_1965613_1965614;chrX_1967409_1967410 chrX_1965393_1965613;chrX_1967410_1967460 100.00 NA 90.00 100.00 NA NA 85.71 100.00 100.00 NA NA 92.31 81.82 NA 100.00 NA NA NA 100.00 92.86 NA 88.00 93.75 100.00 NA 100.00 100.00 88.89 100.00 NA 84.62 100.00 100.00 100.00 NA 100.00 91.67 100.00 87.50 88.89 90.00 94.44 NA 90.00 NA 100.00 100.00 100.00 92.86 100.00 100.00 90.00 92.86 100.00 100.00 90.00 100.00 90.91 K intron_retention CG6859 chr3L + chr3L_15137636_15137768 chr3L_15137635_15137636;chr3L_15137768_15137769 chr3L_15137556_15137635;chr3L_15137769_15139146 0.00 0.00 0.00 0.00 3.45 2.22 0.00 0.00 0.00 2.50 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 5.41 4.08 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 K intron_retention sec24,RI_chr2R_5764938_5764997,I_chr2R_5768722_5769689 chr2R - chr2R_5764945_5764997 chr2R_5764944_5764945;chr2R_5764997_5764998 chr2R_5764806_5764944;chr2R_5764998_5765095 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 4.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 1.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor osa,I_chr3R_13542657_13542834,I_chr3R_13542657_13543500,I_chr3R_13542657_13543662,I_chr3R_13542657_13543668,I_chr3R_13543730_13543786 chr3R - chr3R_13542657_13543500;chr3R_13542657_13543662;chr3R_13542657_13542834;chr3R_13542657_13543668;chr3R_13542657_13543677 chr3R_13542657_13543968 chr3R_13542557_13542656;chr3R_13543969_13544017 14.81 18.64 12.07 21.50 13.73 16.13 17.17 15.45 15.23 22.64 7.27 18.94 24.29 14.49 13.24 10.89 23.61 16.36 15.38 16.78 20.34 14.44 21.93 16.67 18.87 19.30 24.69 14.89 12.24 19.32 10.17 5.26 5.43 13.01 7.55 19.74 24.18 13.21 22.08 14.39 12.50 13.82 10.00 14.86 8.00 7.50 10.00 8.79 16.90 14.29 18.09 12.96 6.45 41.18 12.35 14.81 10.53 10.53 K alternative_donor eIF4G,I_chr4_948813_950447 chr4 - chr4_950758_951137 chr4_950758_950907 chr4_950706_950757;chr4_951138_951213 3.63 0.00 4.76 4.88 0.00 4.17 5.45 6.49 4.88 NA 0.00 4.69 6.25 0.00 0.00 2.47 0.00 4.00 4.35 5.88 0.00 0.00 0.00 3.70 0.00 7.14 0.00 14.29 NA NA 4.76 NA NA 3.45 4.76 4.00 NA NA NA 3.57 NA 1.59 2.94 3.85 NA NA NA NA 4.62 NA 2.70 0.00 NA NA 0.00 NA NA NA K alternative_acceptor CG9934,I_chr2L_13018178_13019071 chr2L - chr2L_13018175_13018789 chr2L_13018178_13018789 chr2L_13018790_13019118;chr2L_13018078_13018174 50.00 59.09 40.00 54.29 64.29 58.82 47.06 52.00 59.52 53.33 40.00 59.38 35.29 61.11 40.91 47.62 43.75 50.00 41.38 56.41 50.00 59.09 44.12 63.16 50.00 38.89 70.00 66.67 50.00 50.00 41.67 80.00 55.56 64.00 35.29 62.50 57.89 57.14 56.25 50.00 40.00 50.00 42.11 38.10 60.00 47.06 53.85 45.16 41.67 80.00 54.55 40.00 NA NA 32.00 46.67 54.55 47.06 K intron_retention Mcm5 chr3R + chr3R_6614539_6614592 chr3R_6614538_6614539;chr3R_6614592_6614593 chr3R_6614244_6614538;chr3R_6614593_6615703 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 5.56 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Spred,I_chr2R_10655876_10656041,I_chr2R_10655876_10656193,I_chr2R_10655876_10656868 chr2R - chr2R_10655876_10656848;chr2R_10655876_10656878;chr2R_10655876_10656782;chr2R_10655876_10656526 chr2R_10655876_10656871 chr2R_10655776_10655875;chr2R_10656879_10656886 0.00 0.00 7.14 2.94 0.00 7.69 0.00 3.85 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 4.76 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG15908_CG9410,CG15908 chr2R + chr2R_2555762_2555813 chr2R_2555761_2555762;chr2R_2555813_2555814 chr2R_2555685_2555761;chr2R_2555814_2556173 0.00 0.00 0.00 0.00 0.00 NA 2.13 0.00 0.00 0.00 0.00 4.88 0.00 0.00 4.35 1.92 0.00 0.00 2.94 4.62 0.00 0.00 NA 0.00 7.69 3.33 0.00 0.00 13.04 NA 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 3.92 4.35 3.39 0.00 0.00 0.00 0.00 4.76 0.00 5.13 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 1.75 K intron_retention Reps,I_chr2L_11105525_11105656 chr2L - chr2L_11103170_11103322 chr2L_11103169_11103170;chr2L_11103322_11103323 chr2L_11100956_11103169;chr2L_11103323_11103363 15.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG6179,RI_chrX_18274964_18275006 chrX + chrX_18274964_18275023 chrX_18274963_18274964;chrX_18275023_18275024 chrX_18274864_18274963;chrX_18275024_18275106 0.00 2.86 0.00 9.68 0.00 0.00 0.00 8.33 0.00 0.00 0.00 4.17 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 3.57 0.00 NA 0.00 0.00 21.21 0.00 4.55 7.41 0.00 0.00 0.00 2.78 0.00 0.00 0.00 2.70 0.00 3.92 0.00 0.00 5.00 2.44 5.00 0.00 2.00 0.00 2.17 0.00 1.82 4.17 0.00 2.63 1.25 0.00 K jcn_only_AA CG4980 chr3R - chr3R_23747816_23747920 chr3R_23747854_23747920 chr3R_23747921_23748082;chr3R_23746995_23747815 100.00 98.41 100.00 100.00 100.00 100.00 100.00 100.00 98.67 98.31 NA 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA 98.80 100.00 98.00 98.31 NA 100.00 65.38 100.00 100.00 96.15 100.00 100.00 100.00 98.55 100.00 98.68 100.00 100.00 100.00 99.17 98.75 100.00 97.22 99.35 100.00 98.88 99.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Alas chr2R + chr2R_19853651_19853794 chr2R_19853650_19853651;chr2R_19853794_19853795 chr2R_19852297_19853650;chr2R_19853795_19854602 0.00 0.00 0.00 0.00 0.00 0.00 3.57 1.72 1.12 0.00 0.00 2.78 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.11 0.00 0.00 3.12 0.00 3.23 0.00 1.47 0.00 2.60 1.41 0.00 2.60 3.08 0.00 1.41 0.00 0.00 2.44 0.00 2.25 2.17 0.00 1.69 2.52 0.00 0.00 2.70 0.95 0.00 3.23 0.00 0.00 0.00 0.00 1.47 0.00 K alternative_acceptor Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5003957_5004832 chr2R_5003957_5004682 chr2R_5003888_5003956;chr2R_5004833_5005357 100.00 100.00 98.46 98.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.30 100.00 97.40 99.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.39 100.00 99.04 98.63 98.97 100.00 100.00 100.00 100.00 100.00 100.00 98.70 100.00 100.00 100.00 100.00 98.73 100.00 100.00 100.00 100.00 98.04 100.00 100.00 K jcn_only_AA CG15012 chr3L - chr3L_4291619_4291686 chr3L_4291624_4291686 chr3L_4291687_4291816;chr3L_4291609_4291618 99.50 100.00 99.60 100.00 99.51 98.75 99.09 98.54 99.54 100.00 99.49 99.02 100.00 99.48 98.13 98.89 99.40 100.00 99.57 98.85 100.00 99.61 99.60 99.16 100.00 99.58 100.00 100.00 100.00 97.39 99.01 100.00 99.23 99.32 100.00 100.00 99.44 98.54 99.50 100.00 99.37 99.26 99.36 99.44 99.26 98.17 99.64 100.00 99.73 98.67 98.95 98.89 99.37 99.59 100.00 99.61 98.82 100.00 K intron_retention CG3829,I_chr2R_20875497_20875710,I_chr2R_20876262_20876320,I_chr2R_20876262_20876323 chr2R + chr2R_20876146_20876202 chr2R_20876145_20876146;chr2R_20876202_20876203 chr2R_20876054_20876145;chr2R_20876203_20876261 0.00 2.70 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2813977;chr2R_2814097_2814174;chr2R_2814327_2814894;chr2R_2815654_2816013;chr2R_2816342_2816577;chr2R_2816779_2817459;chr2R_2817604_2817753 chr2R_2813978_2814096;chr2R_2814175_2814326;chr2R_2814895_2815653;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817460_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_560576_560883;chr3R_560576_560886 chr3R_560576_560847 chr3R_560204_560575;chr3R_560887_561068 63.52 63.03 72.73 63.59 62.65 62.99 62.76 61.70 62.41 63.77 78.57 62.91 69.16 80.00 61.59 61.17 73.27 63.55 62.33 63.01 58.65 75.27 63.48 63.16 63.64 63.51 62.44 63.83 74.76 61.46 63.07 63.74 63.81 73.18 63.92 NA 63.28 74.04 53.33 75.54 73.95 62.84 71.70 74.62 63.54 73.10 62.10 62.81 73.06 63.49 62.23 62.00 63.83 73.40 62.35 63.57 62.80 84.67 K intron_retention Tsp42Ee,RI_chr2R_2904593_2904783 chr2R + chr2R_2904881_2904939 chr2R_2904880_2904881;chr2R_2904939_2904940 chr2R_2904784_2904880;chr2R_2904940_2905131 0.09 0.40 0.00 0.09 0.00 0.00 0.00 0.19 0.06 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.16 0.00 0.14 0.11 0.00 0.63 0.26 0.24 0.24 0.09 0.75 0.81 1.56 0.28 0.00 0.00 0.00 0.11 0.12 0.44 0.00 0.09 0.21 0.09 0.10 0.12 0.00 0.08 0.15 0.00 0.00 0.00 0.13 0.30 0.25 0.00 0.10 0.20 0.00 0.18 0.00 0.11 K cassette slgA,I_chrX_21247694_21251677,I_chrX_21253735_21253820 chrX + chrX_21247694_21251677;chrX_21250737_21251677 chrX_21250737_21250999,chrX_21247694_21250999;chrX_21251122_21251677 chrX_21251000_21251121 chrX_21247594_21247693;chrX_21251678_21251759 31.58 33.33 26.32 28.57 54.55 36.36 12.50 27.78 28.57 NA NA 52.00 NA 23.08 23.08 21.05 69.23 46.15 13.33 31.58 30.00 57.14 37.04 22.73 41.67 50.00 35.71 NA NA 33.33 31.82 NA NA 19.05 40.00 NA 42.31 31.82 36.00 33.33 NA 34.62 23.08 47.06 NA 25.00 21.43 15.79 26.09 23.08 27.27 21.74 NA NA 37.50 25.00 NA NA K alternative_acceptor Plc21C,I_chr2L_343730_344038 chr2L + chr2L_344490_344575 chr2L_344490_344554 chr2L_344042_344489;chr2L_344576_344947 18.18 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 18.18 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor Lam chr2L + chr2L_5542656_5543324;chr2L_5543273_5543324;chr2L_5542661_5543324 chr2L_5542864_5543324 chr2L_5543325_5543794;chr2L_5542527_5542655 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 K intron_retention CG31997,I_chr4_175592_176390 chr4 - chr4_175592_175652 chr4_175591_175592;chr4_175652_175653 chr4_175514_175591;chr4_175653_175721 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 K intron_retention Snr1,I_chr3R_1297469_1297546 chr3R + chr3R_1297053_1297546 chr3R_1297052_1297053;chr3R_1297546_1297547 chr3R_1296531_1297052;chr3R_1297547_1297646 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.21 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.79 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ddip2,I_chr3L_252776_253313 chr3L - chr3L_252945_253313 chr3L_252944_252945;chr3L_253313_253314 chr3L_252835_252944;chr3L_253314_253413 29.41 36.84 32.14 39.13 26.32 20.00 40.91 24.14 28.57 NA 30.77 41.67 40.00 30.77 27.27 20.00 29.41 28.57 28.57 22.22 21.74 47.83 28.57 26.32 50.00 29.41 33.33 58.82 60.00 13.64 16.67 41.67 26.09 26.92 38.46 36.00 17.86 26.32 39.13 26.47 30.77 34.48 36.36 31.03 NA 26.32 35.00 14.29 31.03 26.09 41.67 21.43 14.29 41.67 35.00 19.05 36.36 17.65 K intron_retention kuz,E_chr2L_13550294_13551106,CE_chr2L_13558833_13594255,F_chr2L_13635998_13637287,RI_chr2L_13636519_13636577,I_chr2L_13636762_13637287 chr2L + chr2L_13636002_13637287 chr2L_13636001_13636002;chr2L_13637287_13637288 chr2L_13635649_13636001;chr2L_13637288_13637387 32.65 21.33 32.65 57.75 26.67 27.12 51.72 18.87 26.42 35.71 58.54 70.09 20.93 36.17 41.51 46.88 27.50 50.00 33.33 34.75 46.15 36.64 20.00 26.67 39.71 56.00 34.67 33.33 36.99 32.50 34.09 30.95 38.55 27.55 28.57 42.25 33.09 21.79 20.51 34.83 29.79 30.34 26.19 23.91 34.55 34.04 15.22 36.76 30.23 23.73 25.00 16.33 20.97 18.75 40.00 25.00 16.67 34.92 K cassette CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_119236_119430 chr2L_119236_119287;chr2L_119376_119430 chr2L_119288_119375 chr2L_119227_119235;chr2L_119431_119554 94.74 97.83 92.86 98.57 93.02 88.57 98.25 94.81 97.75 94.44 96.43 93.90 94.12 92.00 90.00 92.50 97.62 90.00 98.11 92.68 90.00 98.08 88.89 98.44 90.24 80.56 96.30 89.29 95.00 91.49 91.11 100.00 100.00 93.15 94.87 90.00 93.55 98.11 98.31 96.10 96.00 94.87 93.94 96.97 100.00 92.68 96.00 93.55 93.98 98.00 94.52 96.55 94.12 94.74 92.54 98.08 97.73 100.00 K cassette CG34347 chr3R + chr3R_27186956_27195957;chr3R_27188081_27195957 chr3R_27188081_27192564,chr3R_27186956_27192564;chr3R_27193245_27195957 chr3R_27192565_27193244 chr3R_27186940_27186955;chr3R_27195958_27195975 69.05 60.00 NA 66.67 NA NA NA NA 75.00 NA NA 100.00 NA NA NA NA NA NA NA 60.00 NA 75.00 75.00 66.67 NA NA 60.00 66.67 60.00 NA NA 66.67 100.00 100.00 66.67 100.00 75.00 NA 80.00 75.00 60.00 75.00 NA 80.00 75.00 NA 100.00 71.43 50.00 NA 40.00 NA 66.67 NA NA NA 40.00 66.67 K alternative_donor tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5960163;chr3R_5959310_5960101;chr3R_5959310_5960041;chr3R_5959310_5960049;chr3R_5959310_5960182;chr3R_5959310_5960026;chr3R_5959310_5960158;chr3R_5959310_5959679 chr3R_5959310_5959789 chr3R_5958937_5959309;chr3R_5960183_5960224 0.00 0.00 0.00 8.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 7.14 6.67 10.00 0.00 5.88 0.00 25.00 12.50 0.00 25.00 0.00 11.11 20.00 25.00 11.11 11.11 0.00 0.00 8.33 0.00 0.00 0.00 25.00 0.00 16.67 11.11 0.00 0.00 0.00 0.00 33.33 0.00 0.00 19.05 6.25 0.00 0.00 0.00 16.67 0.00 6.25 0.00 0.00 7.69 N jcn_only_AD CG17255,I_chrX_10366177_10366615,RI_chrX_10366177_10367270 chrX - chrX_10366177_10367360;chrX_10366177_10367201;chrX_10366177_10367458;chrX_10366177_10367270;chrX_10366177_10366615 chrX_10366177_10368085 chrX_10366077_10366176;chrX_10368086_10368118 69.00 65.74 76.07 65.05 65.88 74.23 67.35 66.32 59.68 76.92 78.57 68.33 66.07 73.60 70.51 58.38 67.23 72.34 67.97 67.68 68.54 82.02 58.73 70.50 69.01 75.91 70.34 70.97 86.62 73.08 73.08 78.26 83.07 63.68 63.87 74.49 59.12 73.03 69.00 75.90 83.33 66.12 68.00 62.02 83.75 87.61 68.52 87.20 67.76 77.46 62.50 52.11 65.57 62.50 70.66 66.67 66.07 86.42 K intron_retention CG7720 chr3R - chr3R_14587729_14594381 chr3R_14587728_14587729;chr3R_14594381_14594382 chr3R_14587702_14587728;chr3R_14594382_14594529 12.50 NA NA NA NA NA NA 14.29 21.43 NA NA 12.50 NA NA 15.38 NA NA NA NA 20.00 NA 11.54 21.43 11.76 NA NA 12.50 NA NA 7.69 40.00 NA NA NA NA 13.33 13.04 NA 10.53 10.00 NA 35.71 NA 2.38 NA 10.53 18.75 21.43 NA 6.67 10.00 NA 12.50 NA NA 11.11 NA 0.00 K jcn_only_AD RpL27,I_chr3R_21510239_21510298,RI_chr3R_21510239_21510441,I_chr3R_21510239_21510464,I_chr3R_21510239_21510656,I_chr3R_21510239_21510726 chr3R - chr3R_21510239_21510656;chr3R_21510239_21510739;chr3R_21510239_21510680;chr3R_21510239_21510298;chr3R_21510239_21510746 chr3R_21510239_21510464 chr3R_21510139_21510238;chr3R_21510747_21510756 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 2.22 0.00 1.05 0.00 2.50 2.17 0.00 2.44 0.00 0.00 0.00 1.56 1.85 1.90 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.62 1.41 4.00 0.00 0.00 3.64 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.55 K alternative_acceptor akirin,I_chr3L_7363173_7364806,I_chr3L_7363177_7364806,I_chr3L_7363177_7364831,I_chr3L_7363211_7364831,I_chr3L_7363731_7364806,I_chr3L_7364126_7364806,RI_chr3L_7364737_7364806 chr3L + chr3L_7363169_7364831 chr3L_7363169_7364806 chr3L_7363111_7363168;chr3L_7364832_7364906 82.05 82.09 91.23 95.65 81.82 90.74 90.62 89.63 82.00 76.92 93.10 86.82 82.05 77.14 87.84 78.38 85.25 84.21 82.35 88.89 84.21 74.58 74.77 81.08 84.44 91.43 85.71 78.12 92.31 66.22 76.71 73.53 42.67 86.96 82.00 88.46 75.41 80.70 79.66 74.19 86.84 84.96 88.14 85.71 85.71 79.71 83.33 80.65 79.29 65.85 82.93 80.39 75.61 81.13 86.67 78.57 75.44 77.36 K alternative_donor drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9390195;chr2R_9389597_9390151;chr2R_9389597_9389940;chr2R_9389597_9390293;chr2R_9389597_9389751;chr2R_9389597_9390264;chr2R_9389597_9389753;chr2R_9389597_9389757 chr2R_9389597_9389907 chr2R_9389497_9389596;chr2R_9390294_9390295 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 3.70 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.74 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_donor CG2003 chr3R + chr3R_27815189_27815312;chr3R_27815253_27815312 chr3R_27815249_27815312 chr3R_27815313_27816636;chr3R_27815109_27815188 93.33 90.38 97.73 88.00 89.66 93.48 93.75 95.59 88.89 93.33 95.24 85.53 89.74 97.44 96.08 92.00 89.19 94.74 96.43 94.00 95.65 100.00 84.75 94.83 96.88 93.55 93.18 86.11 100.00 88.46 68.42 83.33 77.19 95.00 97.06 87.50 83.33 85.42 95.08 82.43 96.55 92.13 96.88 97.56 96.15 82.26 95.12 83.61 95.35 90.91 91.04 88.57 92.86 94.87 94.12 85.19 94.67 90.59 K alternative_donor CtBP chr3R + chr3R_8847030_8847141 chr3R_8847039_8847141 chr3R_8847142_8847364;chr3R_8846898_8847029 20.99 18.52 21.18 21.13 23.19 17.20 20.99 23.08 20.00 15.62 14.44 18.13 16.28 23.46 21.36 25.77 20.83 21.74 20.99 23.75 17.81 18.07 28.05 18.29 18.06 21.21 18.31 17.48 19.49 18.82 22.22 18.33 17.46 22.76 27.85 17.89 20.00 19.40 20.56 23.16 21.05 23.03 19.48 16.90 20.45 26.42 22.22 22.90 21.35 25.00 25.68 22.95 18.33 22.54 18.10 21.13 22.97 20.48 K intron_retention CG7956 chr3R + chr3R_17352625_17352984 chr3R_17352624_17352625;chr3R_17352984_17352985 chr3R_17351551_17352624;chr3R_17352985_17353123 90.70 89.74 84.78 98.08 80.00 88.89 95.40 98.41 92.78 76.47 94.74 93.55 95.83 93.62 90.70 96.10 94.59 81.58 92.00 97.06 90.91 85.19 89.77 90.28 97.06 93.75 91.94 97.22 76.19 78.72 86.81 97.22 82.14 93.59 93.62 78.05 80.49 88.24 87.76 82.46 83.05 90.12 96.55 88.89 81.58 88.12 85.96 72.46 94.19 90.80 93.62 88.24 77.42 97.56 97.14 94.87 94.12 79.31 K jcn_only_AD SAK chr3L - chr3L_21508757_21508877 chr3L_21508757_21508815 chr3L_21508661_21508756;chr3L_21508878_21508916 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention CG7987,RI_chr3R_10400799_10401492 chr3R - chr3R_10400608_10401492 chr3R_10400607_10400608;chr3R_10401492_10401493 chr3R_10400270_10400607;chr3R_10401493_10401559 53.85 40.00 39.29 42.86 55.00 50.00 53.66 44.12 57.14 76.92 50.00 43.64 93.75 55.17 50.00 38.89 60.00 48.15 61.54 50.72 42.11 45.00 54.24 47.62 63.33 69.57 51.22 54.76 57.69 52.94 35.59 64.00 63.64 51.11 55.56 62.86 66.67 55.88 39.66 69.70 77.78 54.00 50.00 52.17 52.00 63.33 53.85 56.76 47.62 73.08 57.89 62.50 63.64 53.85 38.89 50.00 48.15 57.69 K intron_retention N chrX + chrX_3063661_3063754 chrX_3063660_3063661;chrX_3063754_3063755 chrX_3057512_3063660;chrX_3063755_3064064 0.00 NA NA 0.00 NA NA 0.00 8.33 3.57 NA 0.00 0.00 NA NA NA NA NA 0.00 NA 0.00 NA 6.98 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA 6.67 0.00 NA 0.00 0.00 0.00 0.00 NA NA 3.70 NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K alternative_donor RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522912_523360;chrX_522912_523414;chrX_522912_523194;chrX_522912_523323;chrX_522912_523389 chrX_522912_523215 chrX_522849_522911;chrX_523415_523436 0.00 0.00 0.00 0.36 1.20 1.06 0.61 0.38 0.00 0.00 1.45 0.48 1.23 1.25 0.00 0.00 0.00 1.32 1.23 0.00 0.00 0.00 0.00 0.00 1.11 1.82 0.92 0.91 0.42 0.00 0.00 0.00 0.00 0.41 1.39 1.04 0.00 0.00 0.00 0.00 0.48 0.30 0.00 0.00 0.00 0.47 0.00 0.39 0.00 0.00 1.03 0.00 0.40 0.00 0.00 0.00 0.00 0.17 K alternative_acceptor CG30187,F_chr2R_18804786_18805198,F_chr2R_18805721_18805778,I_chr2R_18820842_18820922 chr2R - chr2R_18805073_18805156 chr2R_18805106_18805156 chr2R_18805157_18805720;chr2R_18805057_18805072 100.00 100.00 100.00 100.00 100.00 95.24 97.62 97.73 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 97.30 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 K jcn_only_AD eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341925_20342041;chr3L_20341636_20342041;chr3L_20341509_20342041;chr3L_20341865_20342041;chr3L_20341486_20342041;chr3L_20341522_20342041;chr3L_20341751_20342041;chr3L_20341530_20342041;chr3L_20341629_20342041;chr3L_20341598_20342041 chr3L_20341759_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG6689,RI_chr3R_7044164_7044221 chr3R - chr3R_7043759_7043827 chr3R_7043758_7043759;chr3R_7043827_7043828 chr3R_7043620_7043758;chr3R_7043828_7044163 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA 8.33 0.00 0.00 0.00 0.00 3.23 NA 0.00 NA 0.00 0.00 0.00 4.35 0.00 NA 0.00 0.00 0.00 0.00 4.17 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD tho2 chr2L - chr2L_2138159_2139629 chr2L_2138159_2138345 chr2L_2137984_2138158;chr2L_2139630_2139673 27.54 12.70 16.33 19.54 13.33 11.11 30.43 11.63 21.43 56.00 31.15 13.39 36.59 15.91 11.48 61.90 10.00 12.86 15.09 23.08 30.36 18.97 37.50 33.90 33.33 23.91 30.12 35.00 58.18 34.85 20.97 27.54 42.39 22.47 37.50 55.74 30.56 26.42 22.78 38.46 36.54 14.96 17.95 25.45 29.17 51.39 12.66 30.30 17.65 39.13 23.19 33.33 41.94 18.75 17.19 34.33 35.53 38.54 K alternative_acceptor mRpS10,CG34316 chr3R + chr3R_11055463_11055522 chr3R_11055463_11055508 chr3R_11055424_11055462;chr3R_11055523_11055749 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K alternative_donor RpL29,I_chr2R_17184688_17191389 chr2R + chr2R_17181380_17181558;chr2R_17181295_17181558 chr2R_17181384_17181558 chr2R_17181559_17181664;chr2R_17181294_17181294 1.18 1.20 0.99 0.83 1.10 1.26 0.82 0.78 0.90 1.45 0.95 1.09 1.43 0.86 0.89 1.07 1.00 1.22 1.13 1.13 0.96 0.00 1.99 1.51 1.73 0.84 4.55 1.29 1.52 1.23 1.28 1.75 0.87 1.07 1.52 1.32 1.88 1.71 2.87 0.91 0.72 0.82 0.92 1.53 1.19 1.67 1.61 1.40 0.86 1.61 0.83 1.68 1.18 4.00 0.92 2.34 1.01 0.89 K intron_retention CG3570 chr2R + chr2R_20491397_20491451 chr2R_20491396_20491397;chr2R_20491451_20491452 chr2R_20491135_20491396;chr2R_20491452_20492194 96.88 100.00 97.67 96.97 97.14 97.67 97.67 100.00 98.67 97.22 96.88 97.26 95.65 96.43 97.62 97.06 100.00 96.97 100.00 97.87 95.83 95.00 96.77 92.54 96.88 100.00 97.96 98.36 87.50 86.05 91.67 97.67 94.52 98.21 94.87 97.78 92.86 92.31 98.53 90.59 100.00 98.84 100.00 96.67 88.71 90.91 91.38 95.74 98.08 89.80 93.85 95.56 98.41 94.55 95.45 95.74 96.23 93.75 K intron_retention Sin3A,I_chr2R_8465791_8466633,I_chr2R_8473578_8480185,RI_chr2R_8479951_8480233 chr2R - chr2R_8465791_8466633 chr2R_8465790_8465791;chr2R_8466633_8466634 chr2R_8465691_8465790;chr2R_8466634_8466733 86.11 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 73.33 NA NA NA NA NA NA NA 93.33 NA NA NA NA 81.82 NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA NA N cassette CG3563,R_chr3R_10568322_10613785,I_chr3R_10615218_10615284,F_chr3R_10620137_10620250 chr3R + chr3R_10568314_10613778;chr3R_10575996_10613778 chr3R_10568314_10589932,chr3R_10575996_10589932;chr3R_10590015_10613778 chr3R_10589933_10590014 chr3R_10568222_10568313;chr3R_10613779_10614341 0.00 0.00 0.00 1.92 0.00 0.00 3.12 2.33 4.11 0.00 NA 1.89 0.00 0.00 0.00 9.76 0.00 0.00 10.71 8.11 0.00 5.56 0.00 0.00 0.00 0.00 0.00 47.22 14.29 2.94 0.00 NA 0.00 2.70 0.00 0.00 0.00 0.00 0.00 2.04 NA 9.80 0.00 0.00 NA 0.00 0.00 0.00 7.27 NA 0.00 0.00 NA NA 0.00 0.00 NA NA K intron_retention Rab10,I_chrX_20122832_20123581 chrX + chrX_20123672_20124139 chrX_20123671_20123672;chrX_20124139_20124140 chrX_20123582_20123671;chrX_20124140_20125284 0.70 0.76 1.47 5.16 0.00 0.00 2.65 1.65 1.49 0.00 9.18 2.84 0.00 0.89 0.00 1.17 2.04 0.00 0.86 0.93 3.57 2.73 0.00 0.00 0.00 0.66 1.33 1.68 4.26 0.00 0.86 0.00 0.69 2.56 0.96 2.05 1.04 0.70 1.00 0.25 0.00 1.43 2.00 0.55 0.00 0.00 0.00 0.00 0.76 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.64 0.00 K jcn_only_AA CG10321,I_chr2R_17522487_17522896 chr2R + chr2R_17522487_17522896 chr2R_17522487_17522885 chr2R_17522387_17522486;chr2R_17522897_17522996 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 94.29 97.73 100.00 100.00 100.00 100.00 NA 100.00 100.00 97.67 100.00 96.67 97.56 95.00 100.00 94.29 96.43 100.00 97.78 97.56 NA 100.00 98.57 100.00 100.00 97.44 100.00 100.00 NA 100.00 100.00 95.24 100.00 96.00 100.00 100.00 100.00 100.00 95.83 100.00 96.88 97.22 100.00 NA K cassette CG7139,I_chr3L_22062296_22063867,I_chr3L_22063306_22063867 chr3L - chr3L_22062296_22063867 chr3L_22062296_22062475;chr3L_22063263_22063867 chr3L_22062476_22063262 chr3L_22062196_22062295;chr3L_22063868_22063967 100.00 100.00 97.44 98.11 100.00 100.00 100.00 100.00 98.61 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 94.55 98.28 98.04 97.14 100.00 98.08 100.00 97.78 100.00 100.00 97.14 100.00 98.18 100.00 97.67 100.00 100.00 98.21 96.25 93.33 98.51 100.00 97.83 97.62 100.00 100.00 98.57 98.51 100.00 100.00 100.00 100.00 100.00 97.73 100.00 96.97 100.00 K jcn_only_AD Lerp chr3R - chr3R_22688433_22688824;chr3R_22688433_22688772;chr3R_22688433_22688494 chr3R_22688433_22688796 chr3R_22688359_22688432;chr3R_22688825_22688828 23.81 NA NA 23.81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention bip2,RI_chr4_481674_487126,RI_chr4_483144_483680,RI_chr4_486609_487126 chr4 - chr4_481283_481339 chr4_481282_481283;chr4_481339_481340 chr4_481200_481282;chr4_481340_481477 6.06 0.00 8.33 28.26 9.52 10.71 11.11 14.29 17.50 7.69 3.85 10.00 20.00 14.29 9.09 6.25 3.85 NA 6.45 7.02 NA 8.00 0.00 0.00 4.76 6.25 0.00 NA 0.00 0.00 5.00 0.00 0.00 9.09 0.00 6.25 0.00 0.00 0.00 0.00 4.55 11.54 11.11 0.00 14.29 10.00 0.00 5.88 4.55 5.26 10.00 0.00 8.33 0.00 9.76 0.00 2.78 13.46 K jcn_only_AA gw,I_chr4_679135_681671 chr4 - chr4_673460_673526 chr4_673469_673526 chr4_673527_673677;chr4_673272_673459 60.85 56.63 65.71 62.39 61.74 62.41 60.54 56.45 58.33 57.81 55.66 56.86 55.36 57.32 65.75 62.60 63.74 65.35 60.29 61.95 58.51 75.00 67.36 64.66 60.53 58.94 63.98 58.75 63.27 62.62 58.47 65.17 66.00 60.91 60.38 65.32 66.41 60.50 60.85 55.74 52.43 64.41 58.44 68.25 56.38 62.69 59.48 62.04 57.35 60.14 60.19 59.57 63.55 67.92 62.32 60.48 65.98 49.07 K intron_retention CG30499,I_chr2R_3452363_3452552 chr2R - chr2R_3452746_3452803 chr2R_3452745_3452746;chr2R_3452803_3452804 chr2R_3452563_3452745;chr2R_3452804_3453251 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG16896,CG30423 chr2R - chr2R_20761824_20761882 chr2R_20761823_20761824;chr2R_20761882_20761883 chr2R_20761710_20761823;chr2R_20761883_20762420 7.14 NA 0.00 8.33 NA NA 8.00 9.09 6.25 NA 13.33 7.14 NA 6.67 0.00 0.00 NA 0.00 4.55 12.12 NA 40.00 13.04 13.04 NA 12.50 19.05 26.32 27.27 NA 9.09 0.00 15.38 3.45 11.11 12.50 22.22 13.33 4.76 0.00 NA 7.41 NA 4.76 NA 4.76 NA 0.00 6.67 7.14 0.00 0.00 NA 7.14 0.00 0.00 NA 0.00 K cassette MTA1-like chr3R - chr3R_1469500_1472775 chr3R_1469500_1469884;chr3R_1469993_1472775 chr3R_1469885_1469992 chr3R_1469171_1469499;chr3R_1472776_1472937 1.59 1.35 1.37 0.00 3.33 1.59 1.47 1.22 1.12 3.95 0.00 1.52 2.38 0.00 2.35 5.56 1.67 1.79 0.00 0.71 1.49 5.41 1.35 1.72 1.41 0.00 0.88 2.27 4.12 0.97 1.49 3.70 2.40 0.00 4.29 4.05 2.31 2.08 2.26 1.16 2.44 1.41 0.00 1.06 2.50 1.27 2.63 1.48 1.53 3.70 0.99 1.69 2.94 1.89 2.08 0.00 2.08 2.27 K mutually_exclusive bbc,I_chr2R_9376554_9377246,REI_chr2R_9379401_9381986 chr2R - chr2R_9375638_9376421,chr2R_9376554_9378939;chr2R_9375638_9377246,chr2R_9377379_9378939 chr2R_9375638_9378244,chr2R_9378377_9378939 chr2R_9376422_9376553;chr2R_9377247_9377378 chr2R_9378245_9378376 chr2R_9375479_9375637;chr2R_9378940_9379098 93.99 94.14 92.77 90.15 94.40 90.73 89.47 88.89 91.98 98.27 91.53 90.81 84.68 90.14 91.57 81.44 93.22 86.44 88.49 89.02 90.24 90.33 92.11 91.76 94.58 92.41 94.10 96.49 95.82 96.14 91.90 96.00 96.77 89.72 94.56 87.35 96.36 94.50 95.00 96.39 97.91 92.56 91.49 95.40 97.46 97.45 94.82 98.28 90.81 93.99 94.76 95.80 96.11 94.61 92.86 94.93 96.52 97.98 K intron_retention I_chr2R_2539027_2539493,Opbp chr2R + chr2R_2541566_2541621 chr2R_2541565_2541566;chr2R_2541621_2541622 chr2R_2540889_2541565;chr2R_2541622_2542014 0.00 NA NA 21.74 NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 K intron_retention dbr,I_chr2L_67112_67568,RI_chr2L_74573_75077 chr2L + chr2L_67508_67568 chr2L_67507_67508;chr2L_67568_67569 chr2L_67389_67507;chr2L_67569_67668 5.63 NA 0.00 13.64 NA NA 8.00 16.00 8.82 NA NA 2.63 NA 0.00 NA 13.79 NA NA 5.56 5.71 NA NA 22.22 NA NA 0.00 NA NA NA NA 0.00 NA 13.64 2.70 7.14 7.69 NA NA NA 0.00 NA 4.17 NA NA NA 0.00 NA 7.69 3.45 NA 0.00 NA NA NA 16.67 NA NA NA K cassette rl,I_chr2RHet_199154_207044,RI_chr2RHet_203476_203577,RI_chr2RHet_203592_207044,I_chr2RHet_232696_247338,RI_chr2RHet_240197_247338 chr2RHet + chr2RHet_199154_207044 chr2RHet_199154_203348;chr2RHet_203476_207044 chr2RHet_203349_203475 chr2RHet_199054_199153;chr2RHet_207045_207144 100.00 100.00 100.00 95.70 100.00 100.00 100.00 99.05 99.21 91.67 100.00 98.68 97.73 100.00 100.00 98.94 100.00 100.00 97.96 98.61 100.00 100.00 97.83 97.30 100.00 96.55 100.00 95.65 100.00 100.00 100.00 95.00 93.33 98.86 100.00 96.88 95.65 100.00 100.00 97.92 100.00 98.72 100.00 97.83 100.00 100.00 100.00 97.30 99.00 100.00 97.96 97.06 100.00 95.24 100.00 100.00 96.77 96.77 K alternative_donor CG15072,RI_chr2R_14576128_14579545,I_chr2R_14589693_14590032 chr2R + chr2R_14575874_14579545;chr2R_14576049_14579545;chr2R_14576247_14579545;chr2R_14576056_14579545;chr2R_14576154_14579545 chr2R_14576017_14579545 chr2R_14579546_14579571;chr2R_14575805_14575873 12.50 0.00 40.00 15.38 0.00 16.67 17.65 27.78 8.00 12.50 11.11 13.33 11.76 16.67 12.50 27.78 0.00 28.57 33.33 20.00 25.00 0.00 22.22 20.00 0.00 37.50 14.29 0.00 0.00 0.00 0.00 0.00 9.09 6.67 8.33 25.00 12.50 0.00 20.00 11.76 0.00 21.43 22.22 36.36 0.00 0.00 0.00 11.11 12.50 0.00 0.00 20.00 25.00 50.00 0.00 0.00 25.00 33.33 K intron_retention Ipk1 chr2R + chr2R_16764127_16764759 chr2R_16764126_16764127;chr2R_16764759_16764760 chr2R_16763980_16764126;chr2R_16764760_16764817 3.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N jcn_only_AD Dbp80,E_chr3LHet_2513829_2513928 chr3LHet + chr3LHet_2409947_2410016 chr3LHet_2409959_2410016 chr3LHet_2410017_2410075;chr3LHet_2409938_2409946 100.00 100.00 100.00 85.33 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA 100.00 K jcn_only_AA I_chr3R_23771063_23772599,CG4951,RI_chr3R_23778808_23778861 chr3R - chr3R_23778799_23778865 chr3R_23778808_23778865 chr3R_23778866_23778961;chr3R_23778715_23778798 96.83 97.83 97.33 96.00 92.31 95.24 93.44 95.79 93.55 94.64 98.53 97.06 100.00 93.44 95.70 96.83 96.67 97.01 98.63 97.45 100.00 95.89 94.44 97.48 95.65 96.77 97.83 95.92 98.85 98.17 95.59 96.40 96.72 99.12 98.53 100.00 94.40 97.56 97.22 94.20 97.56 97.26 96.83 96.55 94.90 95.21 97.20 97.93 95.65 96.40 96.88 98.04 96.26 91.76 96.47 97.03 98.16 97.46 K intron_retention CG6294,CG6299,I_chrX_15359667_15359763 chrX + chrX_15360510_15360575 chrX_15360509_15360510;chrX_15360575_15360576 chrX_15360252_15360509;chrX_15360576_15360845 11.63 5.41 5.00 16.67 16.13 12.20 9.52 5.63 7.45 0.00 12.50 7.14 15.56 3.03 6.90 13.51 3.03 14.29 5.26 6.45 13.64 33.33 14.29 14.29 12.50 8.57 12.50 52.38 11.54 11.76 8.51 12.00 9.09 12.82 3.57 17.39 10.00 15.38 11.69 14.29 20.00 7.62 11.76 5.13 10.00 18.52 10.00 22.22 12.50 20.00 5.17 9.09 10.00 6.78 11.11 11.63 10.00 16.00 K jcn_only_AA CG16710,CG18754 chr3R + chr3R_19509105_19509242 chr3R_19509105_19509176 chr3R_19508492_19509104;chr3R_19509243_19509606 99.17 97.37 97.00 100.00 100.00 100.00 99.00 99.15 100.00 NA 100.00 100.00 100.00 98.53 98.51 98.73 100.00 100.00 100.00 97.24 98.84 100.00 100.00 96.72 100.00 98.28 93.33 NA NA 95.45 100.00 100.00 100.00 97.90 97.56 95.00 96.92 100.00 100.00 95.95 100.00 99.17 100.00 97.83 96.55 100.00 97.92 96.88 99.19 96.30 97.47 100.00 100.00 96.88 100.00 98.08 100.00 NA K multi_cassette RI_chrX_11473566_11473702,roX2,noncoding_23149,I_chrX_11475074_11475402 chrX + chrX_11473158_11473702 chrX_11473158_11473247;chrX_11473270_11473381;chrX_11473433_11473544;chrX_11473562_11473702 chrX_11473248_11473269;chrX_11473382_11473432;chrX_11473545_11473561 chrX_11473148_11473157;chrX_11473703_11473726 14.55 22.22 NA 10.53 NA NA NA 16.67 19.05 18.18 NA 13.79 NA 10.00 7.14 10.00 NA NA 11.76 15.79 NA NA NA NA NA 33.33 NA NA NA NA 14.29 NA NA 14.81 NA NA NA NA NA 10.34 NA 17.65 14.29 NA NA 23.08 20.00 6.67 15.62 NA NA NA NA NA 10.53 NA 30.00 5.88 K jcn_only_AD CG6236 chr3R - chr3R_11153785_11153876;chr3R_11153785_11153869 chr3R_11153785_11153849 chr3R_11153649_11153784;chr3R_11153877_11153988 36.96 38.75 27.78 35.71 57.69 39.02 32.84 38.74 38.27 38.46 40.91 46.62 59.26 60.00 28.12 32.94 NA 38.46 40.00 37.16 58.33 50.85 26.17 32.94 37.78 60.00 23.89 30.88 37.08 31.62 43.90 27.27 31.48 39.09 31.94 34.78 30.65 28.21 36.84 33.84 35.92 34.40 50.00 31.29 34.44 35.38 32.00 39.15 39.84 27.50 30.56 40.91 44.05 40.68 46.34 30.68 27.37 44.27 K jcn_only_AD pelo,I_chr2L_9707821_9708144,I_chr2L_9707891_9708144,I_chr2L_9708081_9708144 chr2L + chr2L_9707891_9708144;chr2L_9706747_9708144;chr2L_9707821_9708144 chr2L_9708081_9708144 chr2L_9708145_9708244;chr2L_9706647_9706746 0.00 1.52 0.00 0.00 0.00 0.00 1.52 1.01 0.00 0.00 2.08 0.90 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 2.13 3.23 0.00 0.00 2.38 0.00 2.02 3.12 3.66 1.54 0.00 3.37 0.00 0.00 0.00 0.00 1.20 0.00 0.00 1.69 0.93 0.00 0.00 1.41 0.00 0.00 0.00 0.81 0.00 0.00 1.04 0.00 0.00 1.54 0.00 1.19 0.00 1.34 K intron_retention Arp14D,RE_chrX_16445264_16446372 chrX - chrX_16443940_16444009 chrX_16443939_16443940;chrX_16444009_16444010 chrX_16443511_16443939;chrX_16444010_16444219 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.53 0.47 0.00 0.00 0.00 2.50 4.17 0.00 0.00 0.44 0.00 0.49 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 K alternative_acceptor CG10737 chr2R + chr2R_15064029_15064095 chr2R_15064029_15064092 chr2R_15063921_15064028;chr2R_15064096_15064248 99.06 99.06 100.00 99.17 98.80 100.00 99.00 99.31 98.94 97.06 100.00 99.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.48 100.00 98.86 99.02 98.95 98.70 100.00 98.77 100.00 97.56 98.41 99.07 100.00 98.00 100.00 98.33 98.33 98.45 98.89 99.32 98.78 100.00 97.88 100.00 98.80 98.67 98.95 100.00 94.87 99.33 100.00 99.14 98.25 98.77 98.96 99.04 97.83 99.35 98.28 K intron_retention CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525704_1527189 chr3L_1525703_1525704;chr3L_1527189_1527190 chr3L_1525642_1525703;chr3L_1527190_1527240 58.62 54.55 59.09 37.50 70.00 72.73 57.50 71.43 55.32 50.00 77.78 68.00 65.22 76.92 73.33 72.41 52.38 66.67 89.47 52.17 61.11 52.63 39.53 44.00 57.89 NA 52.38 NA 64.71 61.11 66.67 53.85 75.00 63.64 64.71 53.85 42.31 57.89 60.87 61.11 46.67 57.78 81.82 66.67 50.00 57.14 70.00 55.56 54.17 63.16 42.86 46.15 35.29 60.00 58.62 42.86 37.04 58.82 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2392054;chrX_2392149_2392515;chrX_2392665_2393243;chrX_2393712_2395659 chrX_2392055_2392148;chrX_2392516_2392664;chrX_2393244_2393711 chrX_2387149_2387248;chrX_2395660_2395759 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 1.12 0.00 0.00 0.00 0.00 0.00 0.00 1.39 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K alternative_donor CG11360,noncoding_20761,I_chr4_701221_705206,I_chr4_705000_705206 chr4 + chr4_701762_705206 chr4_705000_705206 chr4_705207_705306;chr4_701667_701761 4.00 4.35 2.94 8.57 3.85 4.00 2.38 3.77 2.90 10.00 4.17 7.69 5.56 4.00 3.33 7.69 2.86 3.45 3.23 4.17 2.70 7.69 3.23 5.56 0.00 4.35 5.56 10.00 0.00 0.00 3.12 NA 7.14 4.00 4.76 10.00 0.00 4.76 0.00 4.08 NA 3.12 3.23 3.45 NA 0.00 NA 4.55 4.88 0.00 4.17 5.88 NA NA 2.13 NA NA 0.00 K intron_retention CG1621,CG1620 chr2R - chr2R_3382967_3383030 chr2R_3382966_3382967;chr2R_3383030_3383031 chr2R_3382371_3382966;chr2R_3383031_3383797 0.00 0.00 0.00 12.12 0.00 0.00 0.00 4.62 2.78 0.00 0.00 0.00 4.65 0.00 3.77 1.72 2.08 0.00 2.08 2.94 5.26 0.00 0.00 0.00 0.00 0.00 4.41 3.85 2.00 0.00 0.00 0.00 1.09 2.99 0.00 0.00 0.00 0.00 0.00 0.00 3.12 2.61 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 K jcn_only_AD CG4699 chr3R + chr3R_11624200_11624442;chr3R_11624133_11624442;chr3R_11624127_11624442 chr3R_11624190_11624442 chr3R_11624443_11624758;chr3R_11623809_11624126 18.03 21.50 16.13 21.11 15.79 18.03 18.97 15.85 18.98 20.91 12.50 20.44 15.00 9.80 12.66 14.08 19.61 14.29 18.87 13.38 18.92 19.58 26.55 18.52 20.35 21.31 23.12 21.51 14.21 14.29 13.64 16.33 16.36 10.64 17.24 25.97 18.34 16.56 15.18 21.92 23.73 20.16 6.25 16.08 11.57 18.18 16.18 17.89 11.93 21.26 20.69 21.35 19.73 23.68 7.14 22.14 15.91 11.85 K cassette par-1,I_chr2R_15361473_15366246,I_chr2R_15362147_15365120,F_chr2R_15362147_15365138,I_chr2R_15362147_15365165,RI_chr2R_15363358_15365120,I_chr2R_15363358_15366246,I_chr2R_15365210_15370456 chr2R + chr2R_15361473_15366246 chr2R_15361473_15365165;chr2R_15365210_15366246 chr2R_15365166_15365209 chr2R_15361373_15361472;chr2R_15366247_15366346 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor As chr3L - chr3L_11200236_11200299 chr3L_11200236_11200297 chr3L_11199522_11200235;chr3L_11200300_11200790 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 90.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 K multi_cassette Rph,I_chrX_10644396_10644958,I_chrX_10646283_10647245,I_chrX_10647710_10648325,RI_chrX_10649048_10651427 chrX - chrX_10645816_10647245 chrX_10645816_10645935;chrX_10646283_10646360;chrX_10646529_10647245 chrX_10645936_10646282;chrX_10646361_10646528 chrX_10644959_10645815;chrX_10647246_10647345 7.69 4.35 9.52 33.33 0.00 4.76 8.33 23.81 11.63 NA 36.36 15.15 26.32 NA 3.70 25.00 6.67 4.35 5.56 14.29 44.44 14.29 15.38 9.09 NA 10.00 18.18 7.69 10.00 NA 16.67 NA 0.00 6.25 NA 0.00 5.56 7.14 0.00 5.56 NA 5.00 20.00 21.43 5.56 NA 7.14 0.00 13.89 0.00 4.76 20.00 6.25 0.00 12.00 9.09 5.56 0.00 K jcn_only_AD CG17737,I_chr3L_3223527_3224313,I_chr3L_3223943_3224313 chr3L + chr3L_3223415_3223474 chr3L_3223422_3223474 chr3L_3223475_3223526;chr3L_3223400_3223414 3.70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 3.70 NA NA NA NA NA NA NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2392054 chrX_2387249_2389073;chrX_2389272_2389644;chrX_2389762_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054 chrX_2389074_2389271;chrX_2389645_2389761;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2392055_2392148 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Khc-73 chr2R - chr2R_11409610_11410378 chr2R_11409609_11409610;chr2R_11410378_11410379 chr2R_11409507_11409609;chr2R_11410379_11410524 5.88 5.56 5.71 12.77 8.33 3.85 4.44 9.09 6.33 5.88 9.09 4.76 22.22 5.26 7.32 5.66 4.76 10.71 8.70 8.22 8.70 3.77 5.41 12.50 13.79 18.18 5.26 7.89 3.77 5.26 8.33 4.35 10.53 0.00 5.88 25.00 7.94 5.41 3.77 7.94 8.33 6.35 0.00 6.38 0.00 0.00 3.12 7.58 8.00 2.70 4.55 5.71 4.76 9.09 4.55 3.23 7.69 0.00 K intron_retention Syx7,I_chr3L_21439901_21439962 chr3L + chr3L_21440598_21440655 chr3L_21440597_21440598;chr3L_21440655_21440656 chr3L_21440181_21440597;chr3L_21440656_21441235 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 6.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042888_5042983;chr2L_5042891_5042983 chr2L_5042935_5042983 chr2L_5042984_5043016;chr2L_5042835_5042887 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 5.88 NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA NA NA NA 25.00 NA 0.00 22.22 NA 11.11 0.00 0.00 9.09 NA 12.50 NA NA NA 0.00 20.00 12.50 NA NA NA 0.00 NA 0.00 7.14 NA 11.11 NA NA NA 0.00 NA NA 0.00 K intron_retention BicD,Aac11,I_chr2L_17475843_17475910 chr2L - chr2L_17475523_17475587 chr2L_17475522_17475523;chr2L_17475587_17475588 chr2L_17475408_17475522;chr2L_17475588_17475615 97.40 100.00 95.00 91.87 100.00 100.00 97.62 97.83 97.56 97.47 100.00 95.49 96.61 93.44 97.06 97.20 94.00 98.18 98.72 96.83 100.00 93.86 96.84 96.88 98.31 100.00 98.65 96.40 99.00 99.13 100.00 96.41 95.43 96.43 94.94 100.00 97.62 97.30 98.63 93.55 97.40 97.81 100.00 96.91 94.19 94.79 95.96 97.28 96.92 96.97 98.88 98.18 97.75 98.81 98.65 98.91 95.18 95.99 K multi_cassette Nos,I_chr2L_10826086_10826539 chr2L - chr2L_10817145_10822967 chr2L_10817145_10818391;chr2L_10818567_10822106;chr2L_10822247_10822967 chr2L_10818392_10818566;chr2L_10822107_10822246 chr2L_10816983_10817144;chr2L_10822968_10823002 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 20.00 75.00 60.00 NA NA NA NA 57.14 NA NA NA 75.00 NA NA NA 75.00 75.00 60.00 NA NA NA NA NA NA NA 66.67 NA NA NA 100.00 NA NA NA NA NA NA NA K intron_retention CG10908 chr2L + chr2L_1974142_1974204 chr2L_1974141_1974142;chr2L_1974204_1974205 chr2L_1974107_1974141;chr2L_1974205_1974480 100.00 98.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.64 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.39 98.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.11 98.36 100.00 100.00 100.00 99.03 100.00 100.00 98.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Atg1,I_chr3L_12790957_12792478 chr3L - chr3L_12780637_12780696 chr3L_12780636_12780637;chr3L_12780696_12780697 chr3L_12780487_12780636;chr3L_12780697_12780833 43.84 53.12 35.48 56.76 45.45 34.78 57.78 51.22 49.18 48.48 62.96 53.33 33.33 47.62 37.50 47.06 33.33 48.15 34.78 60.71 61.54 56.76 43.84 50.98 52.17 66.67 30.91 32.61 69.39 43.59 46.43 46.67 26.47 46.88 33.33 42.86 50.00 43.10 31.15 39.06 42.86 40.62 39.13 40.00 38.46 48.00 41.18 36.84 42.86 44.44 40.35 36.11 50.00 45.16 37.04 50.00 41.38 23.08 K intron_retention eIF2B-alpha chr3R - chr3R_25760804_25760858 chr3R_25760803_25760804;chr3R_25760858_25760859 chr3R_25760533_25760803;chr3R_25760859_25761013 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 3.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention CG31216 chr3R + chr3R_15521353_15522273 chr3R_15521352_15521353;chr3R_15522273_15522274 chr3R_15521306_15521352;chr3R_15522274_15522378 41.52 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA 46.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA N jcn_only_AA Rab2,I_chr2R_2584435_2585553 chr2R + chr2R_2585891_2585965 chr2R_2585891_2585950 chr2R_2585554_2585890;chr2R_2585966_2586134 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Sap47,I_chr3R_11761076_11761674,I_chr3R_11761436_11761674,F_chr3R_11761635_11761698,E_chr3R_11761635_11761703 chr3R + chr3R_11761307_11761674 chr3R_11761306_11761307;chr3R_11761674_11761675 chr3R_11761299_11761306;chr3R_11761675_11761774 77.78 85.71 65.38 85.71 76.19 78.26 62.79 91.94 76.39 90.00 45.00 80.70 58.62 88.00 75.76 79.66 81.08 67.86 76.92 76.00 53.33 97.78 77.78 76.00 77.78 66.67 70.00 75.00 91.30 90.62 72.92 76.19 95.83 81.36 63.64 88.24 82.61 70.00 77.78 77.50 54.17 76.67 82.14 74.07 64.00 81.82 88.00 78.12 77.42 68.00 77.14 88.89 79.17 82.35 81.40 94.12 90.91 73.91 K jcn_only_AD how chr3R + chr3R_17867954_17868628 chr3R_17868078_17868628 chr3R_17868629_17869101;chr3R_17867942_17867953 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA 97.67 NA 100.00 100.00 100.00 NA NA 97.56 97.92 NA 100.00 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 98.18 NA NA NA NA NA 100.00 NA NA 100.00 K alternative_donor CG30492,C_chr2R_3522706_3523025,RI_chr2R_3536203_3536977,I_chr2R_3543397_3543455 chr2R + chr2R_3516481_3517681 chr2R_3516618_3517681 chr2R_3517682_3517750;chr2R_3516480_3516480 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG7029 chr3R + chr3R_18618322_18618379 chr3R_18618321_18618322;chr3R_18618379_18618380 chr3R_18618112_18618321;chr3R_18618380_18618847 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG9526,I_chr2L_6457114_6457365,I_chr2L_6457278_6457337 chr2L + chr2L_6457114_6457337 chr2L_6457278_6457337 chr2L_6457338_6457437;chr2L_6457014_6457113 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 1.52 4.17 0.00 0.00 0.00 2.56 3.80 0.00 3.39 1.82 0.00 1.54 0.00 2.13 0.00 2.70 0.00 2.41 1.69 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 2.38 0.00 0.00 NA 0.00 0.00 0.00 2.56 0.00 K jcn_only_AA CG1021,I_chr3R_2217711_2231099,I_chr3R_2217711_2231390,RI_chr3R_2217711_2231463,I_chr3R_2217742_2218601,I_chr3R_2217742_2219453,I_chr3R_2218465_2231390,RI_chr3R_2218465_2231463,I_chr3R_2218682_2231463,I_chr3R_2219634_2231390,I_chr3R_2231383_2231463 chr3R - chr3R_2217742_2218601;chr3R_2217711_2218601 chr3R_2218465_2218601 chr3R_2218602_2218681;chr3R_2217642_2217710 12.50 9.52 21.74 22.58 NA NA NA 18.52 15.79 NA NA 15.38 24.00 NA 3.57 9.52 NA NA NA 0.00 7.41 10.26 4.88 10.00 14.71 18.18 25.93 25.71 NA NA NA NA 13.89 19.15 NA 14.81 12.12 11.43 9.62 16.36 NA 12.50 NA 18.92 NA NA 9.09 NA 19.44 11.11 10.53 12.50 0.00 NA 15.38 19.05 1.69 4.35 K intron_retention Csk,I_chr3R_7463337_7463512,I_chr3R_7468917_7472437,I_chr3R_7468917_7472509,I_chr3R_7468928_7472509 chr3R - chr3R_7468928_7472509 chr3R_7468927_7468928;chr3R_7472509_7472510 chr3R_7468892_7468927;chr3R_7472510_7472537 73.40 75.00 88.89 74.07 63.64 66.67 82.35 81.25 63.64 NA 50.00 65.38 72.73 66.67 75.00 79.41 77.78 NA 76.92 69.23 60.00 NA 68.75 91.67 63.64 75.00 78.26 NA NA 77.78 80.00 NA 72.73 66.67 36.36 70.00 46.15 NA NA 54.55 63.64 68.18 88.89 80.00 NA NA NA 76.92 80.65 NA 53.33 76.47 NA NA 75.00 NA NA NA K intron_retention Ucrh,CREFI_chr3LHet_606442_607073 chr3LHet + chr3LHet_606275_606349 chr3LHet_606274_606275;chr3LHet_606349_606350 chr3LHet_606198_606274;chr3LHet_606350_606441 3.12 4.35 2.82 2.97 0.00 4.05 1.89 5.42 3.27 8.70 1.61 2.70 2.97 2.44 2.11 4.60 1.64 4.55 2.40 4.81 0.00 0.00 9.09 7.69 13.04 6.06 18.52 NA 3.45 6.67 0.98 0.00 2.56 3.95 29.41 11.76 0.00 0.00 5.26 0.00 0.00 1.89 0.00 0.00 5.00 4.48 0.00 2.63 2.94 4.55 25.00 6.25 NA NA 1.98 8.89 6.25 4.17 K intron_retention CG8889 chr2R - chr2R_7914078_7914227 chr2R_7914077_7914078;chr2R_7914227_7914228 chr2R_7914036_7914077;chr2R_7914228_7914347 0.00 NA NA 0.00 NA NA 5.56 10.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 10.00 NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA NA NA 0.00 NA NA K intron_retention Tfb4,I_chr2L_1156009_1158078,I_chr2L_1153732_1157370,I_chr2L_1163632_1163759 chr2L - chr2L_1150070_1150130 chr2L_1150069_1150070;chr2L_1150130_1150131 chr2L_1149651_1150069;chr2L_1150131_1150326 0.00 0.00 0.00 3.39 0.00 0.00 0.00 1.69 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.74 2.41 0.00 3.03 7.89 2.82 6.12 9.52 3.64 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 1.32 1.23 5.26 1.18 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 K intron_retention dpr17 chr3R + chr3R_7936756_7936825 chr3R_7936755_7936756;chr3R_7936825_7936826 chr3R_7936554_7936755;chr3R_7936826_7937080 88.89 87.10 94.12 96.30 89.47 100.00 93.75 91.67 90.91 72.73 76.92 88.89 100.00 95.65 92.00 86.96 94.12 92.31 94.44 85.00 92.31 78.95 92.45 88.89 94.44 95.24 84.38 81.82 80.00 80.95 95.24 81.82 72.73 89.66 86.96 89.47 88.24 80.95 86.49 85.11 96.88 78.57 100.00 82.05 77.78 85.42 78.05 71.88 91.84 88.89 85.71 95.45 90.48 81.25 80.95 85.00 91.07 85.19 K cassette lap,I_chr3R_3017854_3019314 chr3R + chr3R_3022116_3024049 chr3R_3022116_3023291;chr3R_3023382_3024049 chr3R_3023292_3023381 chr3R_3022029_3022115;chr3R_3024050_3024362 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Aldh-III,RE_chr2R_3355332_3355720,I_chr2R_3356541_3356614,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3354822_3354987 chr2R_3354821_3354822;chr2R_3354987_3354988 chr2R_3354726_3354821;chr2R_3354988_3355138 8.70 5.92 8.51 14.13 8.05 10.11 12.99 7.45 8.70 6.98 8.89 7.56 10.00 7.79 9.71 9.32 6.74 12.50 9.30 10.29 8.96 25.58 8.75 7.73 11.11 19.70 9.46 11.90 12.50 10.11 6.74 8.54 10.26 8.59 5.94 20.24 6.33 4.83 6.19 8.57 12.31 9.57 6.94 5.08 9.80 9.09 6.22 12.07 7.69 8.55 7.32 4.44 6.67 6.25 10.75 6.74 6.25 11.94 K alternative_acceptor CG9286,Dip-B chr3R + chr3R_9606899_9606962 chr3R_9606899_9606959 chr3R_9606831_9606898;chr3R_9606963_9607027 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 NA 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 93.33 96.30 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.78 K jcn_only_AD CG7530,I_chr3R_10556352_10557136,eff chr3R - chr3R_10556352_10557105;chr3R_10556352_10557130;chr3R_10556352_10557126;chr3R_10556352_10557198 chr3R_10556352_10557148 chr3R_10556252_10556351;chr3R_10557199_10557231 1.23 0.00 0.00 4.88 0.98 1.39 0.00 1.19 0.00 0.00 0.00 1.36 1.28 1.16 3.88 1.67 0.00 1.75 3.06 2.44 1.27 NA 0.77 0.00 2.33 0.00 3.03 0.00 5.77 0.00 1.22 1.89 4.00 1.29 0.00 0.00 0.82 3.57 1.69 1.55 0.00 1.09 2.27 3.03 0.00 1.35 1.25 0.60 2.56 0.00 0.00 0.00 2.31 1.61 0.88 3.30 0.00 1.47 N cassette unc-13,I_chr4_897821_902468,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_897821_903242;chr4_899619_903242;chr4_899619_903586;chr4_897821_903586 chr4_897821_902468,chr4_899619_902468;chr4_902576_903242,chr4_902576_903586 chr4_902469_902575 chr4_897721_897820;chr4_903587_903686 22.05 25.00 58.33 12.73 14.29 23.08 15.38 22.45 21.28 NA NA 19.61 62.50 28.57 22.22 34.62 30.77 50.00 36.84 16.67 NA 9.86 25.00 10.00 16.67 18.52 10.26 23.53 13.64 17.65 17.39 NA 29.41 28.95 25.00 7.14 20.00 NA 25.00 25.00 20.00 21.88 29.41 21.88 NA 14.29 NA 13.89 27.78 NA 13.64 27.27 NA NA 28.57 NA NA NA K intron_retention RpS15 chr2R - chr2R_12458511_12458693 chr2R_12458510_12458511;chr2R_12458693_12458694 chr2R_12458422_12458510;chr2R_12458694_12458716 0.04 0.00 0.04 0.02 0.00 0.00 0.28 0.06 0.04 0.12 0.04 0.07 0.04 0.10 0.07 0.00 0.00 0.00 0.07 0.04 0.04 0.00 0.00 0.09 0.67 0.32 0.65 0.46 0.00 0.00 0.69 0.00 0.00 0.05 0.00 0.00 0.08 0.00 0.00 0.00 1.14 0.05 0.00 0.28 0.00 0.00 0.00 0.00 0.04 0.00 0.76 0.38 0.00 0.00 0.09 0.00 0.10 0.00 K alternative_donor CG11986,I_chr3R_4841440_4841505 chr3R + chr3R_4841238_4841290 chr3R_4841242_4841290 chr3R_4841291_4841990;chr3R_4841168_4841237 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG32138 chr3L + chr3L_14062028_14063021 chr3L_14062027_14062028;chr3L_14063021_14063022 chr3L_14061908_14062027;chr3L_14063022_14063741 87.42 92.05 85.48 93.85 87.50 85.19 88.37 86.02 85.90 88.00 86.96 94.12 98.04 88.14 85.48 85.19 85.96 87.72 91.80 88.59 86.36 84.09 84.72 91.74 88.24 86.89 86.90 89.58 90.57 86.11 85.96 87.80 86.00 85.71 90.00 100.00 90.07 89.90 89.57 89.26 90.48 87.42 83.33 85.71 77.19 88.16 87.39 88.89 91.89 80.77 85.00 85.33 77.17 90.32 86.76 88.89 82.58 69.57 K intron_retention Lerp chr3R - chr3R_22669298_22669469 chr3R_22669297_22669298;chr3R_22669469_22669470 chr3R_22669167_22669297;chr3R_22669470_22669638 26.09 26.09 13.04 17.65 25.00 15.79 37.50 22.22 17.65 33.33 NA 16.00 NA NA 11.76 26.67 NA NA 14.29 26.32 NA 42.86 37.04 37.04 41.18 NA 35.00 NA 33.33 27.27 23.08 30.77 35.71 26.09 16.67 31.82 37.50 29.03 25.00 45.83 NA 14.81 NA 41.18 21.43 19.05 27.27 23.53 28.57 23.08 18.18 NA 29.41 22.73 22.22 19.23 22.73 36.84 K multi_cassette Vha100-1,I_chr3R_24958227_24960770,RI_chr3R_24959152_24959582,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24958227_24960770 chr3R_24958227_24959059;chr3R_24959152_24959582;chr3R_24959684_24960278;chr3R_24960321_24960770 chr3R_24959060_24959151;chr3R_24959583_24959683;chr3R_24960279_24960320 chr3R_24958127_24958226;chr3R_24960771_24960870 40.00 42.86 NA 55.56 NA 33.33 42.86 50.00 50.00 NA NA 94.74 NA 75.00 50.00 NA NA 50.00 NA 55.56 60.00 11.11 40.00 40.00 30.00 50.00 18.18 NA 20.00 NA 17.39 NA 25.00 42.86 33.33 50.00 26.67 28.57 35.71 14.29 28.57 41.67 NA 33.33 42.86 33.33 25.00 NA 55.56 30.00 30.77 25.00 NA NA 75.00 33.33 42.86 NA K intron_retention mthl10 chr3L - chr3L_335858_335928 chr3L_335857_335858;chr3L_335928_335929 chr3L_335245_335857;chr3L_335929_336682 0.00 0.00 0.00 3.37 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 1.59 0.00 0.00 0.76 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 2.94 0.00 0.00 1.08 0.00 0.00 0.00 K intron_retention I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17198803_17200781 chr3R_17198802_17198803;chr3R_17200781_17200782 chr3R_17198703_17198802;chr3R_17200782_17200881 9.09 9.09 0.00 10.34 5.56 NA 9.09 25.93 5.41 NA NA 17.24 11.76 12.50 13.33 9.09 0.00 10.53 22.73 10.20 NA 8.33 10.53 8.70 NA 7.41 10.00 25.00 0.00 7.69 NA 0.00 4.65 6.25 NA 18.75 16.13 5.56 9.52 7.32 5.88 22.22 6.67 NA 7.69 4.76 17.65 5.00 20.59 10.00 12.00 0.00 5.56 21.43 12.00 10.53 12.50 9.09 K intron_retention fw chrX - chrX_11889154_11889217 chrX_11889153_11889154;chrX_11889217_11889218 chrX_11889027_11889153;chrX_11889218_11889279 87.50 91.67 NA NA NA NA 72.73 88.89 75.00 66.67 NA 87.50 NA NA 88.89 69.23 NA NA NA 80.95 NA 25.00 72.73 80.00 NA NA 90.00 NA NA 85.71 100.00 76.92 95.00 100.00 88.89 63.64 70.83 88.24 76.92 68.18 70.00 76.92 NA 76.92 94.12 90.91 75.00 71.43 90.00 65.00 94.12 87.50 97.56 89.47 90.00 94.44 92.86 95.00 K intron_retention G9a,I_chrX_144264_144326,I_chrX_145325_145634,I_chrX_145570_145634 chrX + chrX_144272_144326 chrX_144271_144272;chrX_144326_144327 chrX_142428_144271;chrX_144327_144426 0.00 NA NA 7.69 NA NA NA NA 5.88 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA NA NA K jcn_only_AD nudE chr3L + chr3L_9892456_9892825;chr3L_9892498_9892825 chr3L_9892375_9892825 chr3L_9892826_9893184;chr3L_9892344_9892374 1.02 NA NA 4.55 NA NA 4.35 NA 0.00 NA NA 0.00 NA NA NA 2.04 NA NA NA 6.06 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 4.76 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention Pk92B chr3R + chr3R_15711151_15711215 chr3R_15711150_15711151;chr3R_15711215_15711216 chr3R_15710878_15711150;chr3R_15711216_15711758 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 2.90 0.00 0.00 0.00 1.79 0.00 0.00 2.13 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor cul-2,RI_chr2L_21657668_21657832,noncoding_4226,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21657777_21657832;chr2L_21657668_21657832 chr2L_21657742_21657832 chr2L_21657833_21657932;chr2L_21657659_21657667 14.14 15.38 18.18 35.56 26.67 20.83 9.78 20.45 20.97 12.12 16.00 18.33 26.32 28.00 18.18 22.67 15.00 20.00 17.65 24.32 22.22 4.58 7.14 11.63 8.62 22.86 10.00 6.00 7.53 5.88 29.41 21.05 6.59 22.95 8.93 14.14 12.50 9.38 8.51 6.58 4.46 16.36 31.58 2.35 6.25 9.68 12.50 12.94 18.64 10.81 11.54 11.11 20.00 11.11 26.67 14.00 11.32 20.45 K intron_retention pigeon chr2L + chr2L_19186656_19186718 chr2L_19186655_19186656;chr2L_19186718_19186719 chr2L_19186251_19186655;chr2L_19186719_19187017 21.05 29.41 26.67 31.82 15.38 22.22 NA 31.25 27.27 NA NA 21.43 33.33 30.77 30.00 23.08 NA 20.00 26.67 26.83 33.33 7.41 6.25 9.09 22.22 21.05 22.73 36.84 9.09 16.67 36.84 NA 10.71 21.88 21.74 6.25 20.00 19.35 12.20 18.92 0.00 25.71 0.00 NA 10.00 25.00 6.67 12.50 26.32 NA 16.13 12.50 14.29 9.52 21.43 13.33 NA 14.29 K jcn_only_AD smi35A,E_chr2L_14222082_14233578,E_chr2L_14222082_14233893,RI_chr2L_14233579_14233647 chr2L - chr2L_14222082_14229531 chr2L_14222082_14229458 chr2L_14222060_14222081;chr2L_14229532_14229536 85.91 NA NA NA NA NA NA 81.82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention I_chr3R_17846331_17846423,CG6028 chr3R - chr3R_17850577_17850647 chr3R_17850576_17850577;chr3R_17850647_17850648 chr3R_17849871_17850576;chr3R_17850648_17850775 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 1.59 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 8.70 0.00 2.78 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 K mutually_exclusive CG2316,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_210055,I_chr4_209875_210628,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_211303,RI_chr4_210688_211927,I_chr4_210688_213991,I_chr4_210688_214019,I_chr4_210688_214049,RI_chr4_210688_214450 chr4 - chr4_209150_210623,chr4_210688_214298 chr4_209150_209203,chr4_209875_214298 chr4_210624_210687 chr4_209204_209874 chr4_209051_209149;chr4_214299_214311 100.00 100.00 93.75 90.91 100.00 91.67 97.62 96.08 96.97 NA 100.00 96.88 100.00 100.00 100.00 96.97 100.00 90.91 100.00 100.00 66.67 100.00 94.44 100.00 100.00 90.00 100.00 100.00 100.00 85.71 92.31 100.00 NA 97.50 92.31 100.00 100.00 100.00 100.00 100.00 NA 96.55 100.00 85.71 NA 90.00 83.33 100.00 97.22 100.00 93.75 100.00 100.00 100.00 93.33 100.00 85.71 85.71 K jcn_only_AA CG7995,EF_chr3L_1739282_1743211 chr3L + chr3L_1738745_1743211 chr3L_1738745_1743207 chr3L_1738599_1738744;chr3L_1743212_1743311 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 92.00 NA NA NA NA NA NA NA NA 100.00 NA 96.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 K alternative_acceptor CG40351 chr3LHet + chr3LHet_594526_594779;chr3LHet_594526_594765 chr3LHet_594526_594756 chr3LHet_594511_594525;chr3LHet_594780_595060 43.18 NA NA 50.00 NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Dlic chrX + chrX_11048699_11049066 chrX_11048724_11049066 chrX_11049067_11049261;chrX_11048472_11048698 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 1.59 1.85 0.00 1.75 0.88 0.00 0.00 0.00 1.72 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 K intron_retention sd,noncoding_23930,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15707636_15707768 chrX_15707635_15707636;chrX_15707768_15707769 chrX_15707634_15707635;chrX_15707769_15708328 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 94.44 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 93.75 NA 100.00 100.00 100.00 100.00 NA NA 100.00 94.74 92.31 100.00 100.00 NA NA 91.67 NA 95.00 95.83 NA 100.00 100.00 NA NA 100.00 NA NA 92.31 K cassette Gmap,I_chrX_15393496_15401194,I_chrX_15400854_15401194,I_chrX_15402291_15403750 chrX + chrX_15393496_15401194 chrX_15393496_15397618;chrX_15400495_15401194 chrX_15397619_15400494 chrX_15393449_15393495;chrX_15401195_15401294 99.22 96.83 98.21 100.00 97.73 100.00 97.50 98.81 100.00 98.51 100.00 99.01 97.87 100.00 100.00 100.00 100.00 100.00 100.00 99.22 100.00 98.89 97.92 100.00 100.00 100.00 97.33 100.00 98.33 98.53 100.00 98.15 100.00 100.00 97.96 97.10 100.00 98.88 100.00 99.06 98.31 99.13 97.78 100.00 98.53 98.70 100.00 100.00 99.08 100.00 98.11 100.00 98.72 100.00 98.51 100.00 98.92 100.00 K jcn_only_AA tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563503_565232;chr3R_563485_565232 chr3R_563461_565232 chr3R_565233_565290;chr3R_563195_563460 11.41 NA NA 0.00 NA NA 26.67 10.34 10.91 NA NA 13.64 NA NA 15.00 NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA 10.71 NA NA 22.58 NA NA NA NA NA NA NA 11.90 NA NA NA NA NA NA 9.76 NA NA NA NA NA 0.00 NA NA NA N intron_retention CG15099 chr2R - chr2R_14725051_14725138 chr2R_14725050_14725051;chr2R_14725138_14725139 chr2R_14724985_14725050;chr2R_14725139_14725207 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 37.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor bol,RI_chr3L_9117011_9118271 chr3L - chr3L_9117011_9118271;chr3L_9116901_9118271 chr3L_9116877_9118271 chr3L_9118272_9118272;chr3L_9116716_9116876 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA N jcn_only_AA nimC1,I_chr2L_13975880_13975977 chr2L - chr2L_13975880_13976476 chr2L_13976221_13976476 chr2L_13976477_13976753;chr2L_13975780_13975879 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA NA NA 31.43 NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA NA NA K alternative_acceptor CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1662576_1662764 chr2R_1662702_1662764 chr2R_1662765_1662934;chr2R_1662507_1662575 97.30 97.14 100.00 97.62 94.44 96.30 100.00 97.96 98.33 90.00 96.43 96.67 100.00 97.06 97.22 97.67 95.65 97.30 96.43 98.53 96.55 100.00 97.30 93.55 100.00 96.30 96.67 NA 85.71 100.00 97.44 93.75 100.00 97.73 88.00 90.00 96.88 96.43 100.00 100.00 90.91 98.18 95.45 100.00 100.00 96.55 96.77 100.00 98.25 91.89 100.00 100.00 100.00 100.00 100.00 96.97 98.11 95.24 K alternative_acceptor CG14982 chr3L + chr3L_3943295_3943355 chr3L_3943295_3943346 chr3L_3942936_3943294;chr3L_3943356_3944341 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Zyx102EF,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1078199_1078263 chr4_1078199_1078258 chr4_1078191_1078198;chr4_1078264_1078326 94.66 94.59 94.29 94.00 95.24 87.88 93.44 94.94 94.23 NA NA 91.07 95.65 90.62 94.87 98.15 100.00 96.77 90.70 92.65 NA NA 85.29 96.88 70.00 92.86 94.74 NA NA 100.00 93.22 96.77 NA 93.55 92.00 100.00 NA NA NA 92.86 95.83 88.06 93.02 89.66 95.83 95.45 95.00 NA 95.00 97.96 94.74 100.00 94.34 95.65 96.00 92.86 94.44 100.00 K intron_retention CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261460_263795 chr4_261459_261460;chr4_263795_263796 chr4_261360_261459;chr4_263796_263839 93.75 NA 90.00 NA NA NA 100.00 84.62 93.75 NA NA 93.75 42.86 100.00 87.50 100.00 NA NA 88.89 94.44 NA NA NA NA NA NA NA NA NA NA 88.89 NA NA 92.31 NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA 88.89 NA NA NA K jcn_only_AD M(2)21AB,I_chr2L_107839_110405,I_chr2L_107957_108587,I_chr2L_110878_111037,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_108347_108587;chr2L_108227_108587;chr2L_108102_108587 chr2L_107839_108587 chr2L_108588_108687;chr2L_107833_107838 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.85 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD ytr,eIF6,RI_chr2R_19738391_19738783 chr2R - chr2R_19736323_19738093 chr2R_19736323_19738079 chr2R_19734681_19736322;chr2R_19738094_19738171 6.14 6.27 14.06 4.11 3.70 6.57 6.17 6.00 6.33 4.76 5.32 3.65 1.92 5.80 NA 12.07 3.23 4.84 10.96 5.45 6.14 6.98 3.74 6.31 5.92 4.35 4.69 6.85 6.16 10.04 8.79 6.13 6.85 5.59 7.89 5.19 4.40 5.63 6.25 6.89 4.56 5.57 5.94 6.99 5.71 6.17 6.63 10.00 4.05 6.54 8.66 6.28 6.15 5.81 5.80 6.83 7.69 9.00 N intron_retention Droj2,RI_chr3R_9207981_9208471,RI_chr3R_9208529_9209185 chr3R + chr3R_9207981_9209956 chr3R_9207980_9207981;chr3R_9209956_9209957 chr3R_9207926_9207980;chr3R_9209957_9210301 95.74 100.00 100.00 73.73 100.00 100.00 94.86 88.10 95.17 100.00 100.00 92.89 93.88 93.33 100.00 96.49 100.00 100.00 95.03 100.00 100.00 93.48 95.11 100.00 88.29 85.88 90.34 91.53 95.91 95.14 100.00 92.51 100.00 93.78 100.00 94.40 96.43 95.78 94.80 96.11 93.18 96.92 100.00 91.77 94.43 93.66 100.00 96.33 95.17 100.00 95.74 100.00 95.38 100.00 95.35 95.45 93.42 97.07 K jcn_only_AA CG3499,I_chr2R_18772777_18772819 chr2R - chr2R_18772185_18772242 chr2R_18772188_18772242 chr2R_18772243_18772316;chr2R_18771871_18772184 33.33 25.81 32.86 40.40 33.33 27.27 30.48 33.33 35.34 38.71 37.21 39.47 40.38 41.18 29.87 32.74 42.86 23.53 31.75 31.88 29.55 34.33 32.38 35.42 25.00 34.52 27.37 38.67 33.85 41.54 39.76 48.00 36.07 37.50 28.99 40.00 27.78 20.29 32.10 33.99 34.29 33.33 29.17 32.86 43.75 36.54 32.22 38.46 38.03 30.11 29.31 26.32 37.50 33.33 26.58 38.75 26.51 24.19 K intron_retention I_chr3R_25628402_25628511,ncd,I_chr3R_25632049_25632125,RI_chr3R_25658089_25658914 chr3R - chr3R_25632067_25632125 chr3R_25632066_25632067;chr3R_25632125_25632126 chr3R_25631983_25632066;chr3R_25632126_25632194 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 1.22 1.61 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.28 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Dsp1,I_chrX_16231287_16231413 chrX + chrX_16227752_16228333;chrX_16228273_16228333;chrX_16227804_16228333;chrX_16227677_16228333 chrX_16227797_16228333 chrX_16228334_16228446;chrX_16227667_16227676 4.76 10.34 3.45 4.88 9.52 8.00 2.22 6.78 9.72 5.56 5.56 4.84 2.70 12.12 3.57 3.23 10.71 3.70 9.52 2.78 5.26 0.00 1.96 3.45 3.23 4.17 5.13 0.00 4.35 0.00 3.03 7.14 4.17 6.35 4.76 3.03 3.33 5.88 8.82 4.08 0.00 3.45 3.33 2.86 0.00 5.26 4.76 10.71 4.76 3.70 2.70 7.69 12.50 0.00 8.82 4.76 5.00 6.67 K intron_retention Lmpt,I_chr3L_16904980_16905228 chr3L + chr3L_16914467_16914536 chr3L_16914466_16914467;chr3L_16914536_16914537 chr3L_16914280_16914466;chr3L_16914537_16915289 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 8.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K cassette Stat92E,RE_chr3R_16362268_16362911,att-ORFB chr3R - chr3R_16362268_16364942 chr3R_16362268_16362915;chr3R_16363186_16364942 chr3R_16362916_16363185 chr3R_16362168_16362267;chr3R_16364943_16365057 100.00 100.00 100.00 97.71 100.00 100.00 99.59 99.71 99.50 100.00 100.00 99.65 99.53 99.43 100.00 99.42 100.00 100.00 99.55 100.00 99.11 95.89 99.49 99.33 100.00 99.30 100.00 100.00 95.12 100.00 99.59 98.78 100.00 99.70 100.00 98.96 100.00 100.00 99.12 98.97 98.81 100.00 100.00 100.00 100.00 99.18 100.00 100.00 99.74 99.28 100.00 100.00 100.00 100.00 100.00 100.00 99.47 100.00 N alternative_acceptor RpL13A,I_chr3R_1450243_1451235,EI_chr3R_1450853_1451054,snoRNA:Me28S-U2134b,snoRNA:Me28S-U2134a chr3R + chr3R_1450853_1451235;chr3R_1450853_1451054 chr3R_1450853_1451134 chr3R_1450753_1450852;chr3R_1451236_1451335 0.00 0.00 0.00 0.01 0.00 0.00 0.18 0.01 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.03 0.12 0.01 0.00 0.01 0.12 0.00 0.01 0.00 0.00 0.00 0.00 0.03 0.01 0.00 0.00 0.00 0.01 0.00 0.01 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.02 0.01 0.00 0.00 0.01 0.01 0.00 K intron_retention CG17333 chrX + chrX_10742279_10742397 chrX_10742278_10742279;chrX_10742397_10742398 chrX_10741803_10742278;chrX_10742398_10742485 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG12703 chrX + chrX_19652310_19652376 chrX_19652309_19652310;chrX_19652376_19652377 chrX_19652135_19652309;chrX_19652377_19653323 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.50 0.29 0.00 0.00 0.34 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.63 0.00 0.90 0.00 0.49 0.65 0.00 0.50 2.76 7.24 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.79 0.69 0.00 0.00 1.01 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3964,I_chr2L_3864196_3864278 chr2L + chr2L_3866987_3867068 chr2L_3866986_3866987;chr2L_3867068_3867069 chr2L_3865978_3866986;chr2L_3867069_3867424 0.00 0.00 NA NA NA 0.00 NA 3.85 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 26.67 20.00 4.76 NA 5.56 0.00 0.00 0.00 NA NA 9.09 NA 0.00 0.00 14.29 0.00 NA NA 0.00 5.13 0.00 0.00 6.67 0.00 NA NA 0.00 0.00 NA 0.00 0.00 3.45 N multi_cassette Caki chr3R - chr3R_17613003_17615170 chr3R_17613003_17613507;chr3R_17613631_17613704;chr3R_17613825_17615170 chr3R_17613508_17613630;chr3R_17613705_17613824 chr3R_17612895_17613002;chr3R_17615171_17615309 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention gce chrX + chrX_15211516_15211580 chrX_15211515_15211516;chrX_15211580_15211581 chrX_15211376_15211515;chrX_15211581_15211595 20.78 NA NA NA NA NA 10.81 55.56 NA NA NA NA NA NA NA NA NA NA NA 27.27 NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA K alternative_donor plexA,RI_chr4_1036247_1047588,RI_chr4_1040642_1047395,RI_chr4_1044307_1046841,RF_chr4_1044307_1047399 chr4 - chr4_1044307_1047395;chr4_1044307_1047399 chr4_1044307_1047588 chr4_1044207_1044306;chr4_1047589_1047625 50.00 50.00 50.00 46.67 NA 57.14 40.00 42.31 44.83 NA NA 59.26 46.67 35.71 NA 58.54 60.00 NA 46.15 52.94 NA 87.50 41.67 NA 20.00 NA 50.00 NA 50.00 60.00 71.43 NA NA 23.53 40.00 70.00 NA NA NA 50.00 NA 26.67 42.86 69.23 NA NA NA 70.00 45.00 NA 69.23 33.33 NA NA 33.33 NA NA NA K alternative_acceptor EDTP chr2R - chr2R_13320630_13320695 chr2R_13320636_13320695 chr2R_13320696_13320839;chr2R_13320279_13320629 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 90.00 94.12 NA 100.00 94.74 100.00 100.00 NA 100.00 NA 100.00 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 90.91 100.00 100.00 NA 100.00 100.00 91.67 100.00 100.00 87.50 100.00 100.00 100.00 NA K alternative_acceptor CG10038 chr3R - chr3R_8176185_8176265 chr3R_8176188_8176265 chr3R_8176266_8176360;chr3R_8176096_8176184 87.62 88.89 NA 85.71 NA NA 100.00 91.67 86.36 NA NA 90.00 NA 90.91 NA 88.89 NA NA NA 75.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA 81.25 90.00 NA NA NA NA NA 83.33 66.67 76.92 NA NA NA 100.00 NA 85.71 NA K alternative_acceptor how chr3R + chr3R_17900667_17903085 chr3R_17900667_17903005 chr3R_17900174_17900666;chr3R_17903086_17903573 96.97 100.00 96.67 97.83 100.00 93.55 97.06 98.11 98.51 85.71 100.00 97.73 100.00 96.00 100.00 97.06 100.00 95.24 96.67 94.12 90.48 98.04 100.00 96.88 95.00 87.50 97.06 96.00 100.00 96.97 100.00 100.00 97.37 95.56 92.00 90.62 100.00 100.00 92.11 98.33 100.00 95.24 100.00 100.00 90.91 94.29 96.97 97.30 97.96 85.71 93.94 100.00 91.67 96.55 96.67 95.65 96.67 94.44 K alternative_donor Tfb1 chr2R + chr2R_10250584_10250749 chr2R_10250627_10250749 chr2R_10250750_10251018;chr2R_10250565_10250583 10.12 NA NA 9.52 NA 12.50 NA 7.69 7.14 NA NA 11.76 NA NA 7.14 NA NA NA NA 5.00 7.69 NA NA NA NA NA NA NA NA NA NA NA 54.55 5.56 NA NA NA NA NA 33.33 NA 10.71 NA NA 14.29 NA NA 50.00 4.35 NA NA NA NA NA NA NA NA 33.33 K jcn_only_AD CG5482,I_chr2R_14519136_14519239 chr2R - chr2R_14519136_14519367;chr2R_14519136_14519254 chr2R_14519136_14519239 chr2R_14519036_14519135;chr2R_14519368_14519403 0.00 2.70 0.00 0.00 3.70 2.33 1.75 1.19 2.67 NA 0.00 1.39 3.33 0.00 0.00 4.17 0.00 0.00 2.33 0.93 0.00 0.00 0.00 0.00 0.00 0.00 2.04 NA 3.57 0.00 1.69 0.00 NA 0.00 2.70 0.00 0.00 2.70 0.00 0.00 NA 1.19 0.00 0.00 3.03 0.00 0.00 0.00 1.16 0.00 1.89 3.85 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG12077,F_chr3L_3318595_3318666,RI_chr3L_3318595_3318691 chr3L - chr3L_3318590_3318691 chr3L_3318595_3318691 chr3L_3318692_3318766;chr3L_3318495_3318589 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 3.23 NA 0.00 2.86 0.00 0.00 NA 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 0.00 5.26 NA NA NA NA 0.00 NA NA K jcn_only_AD CG9674,I_chr3L_16793055_16793171,I_chr3L_16793055_16793190,I_chr3L_16793055_16800660 chr3L - chr3L_16793055_16793196;chr3L_16793055_16793173 chr3L_16793055_16793200 chr3L_16792955_16793054;chr3L_16793201_16793268 96.15 NA NA 100.00 NA NA 94.74 90.62 89.80 NA 100.00 NA NA NA NA 100.00 NA NA 95.65 93.94 NA 95.45 100.00 NA NA NA NA 96.15 96.77 NA 93.55 NA 96.30 96.15 95.00 NA NA NA NA 95.45 NA 100.00 NA NA NA NA NA 96.67 96.30 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG18213 chr3R - chr3R_12865398_12865459 chr3R_12865407_12865459 chr3R_12865460_12865528;chr3R_12865340_12865397 100.00 NA 91.67 95.45 NA NA 100.00 100.00 100.00 100.00 100.00 93.75 100.00 92.31 100.00 100.00 88.89 100.00 90.91 96.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 88.24 100.00 100.00 100.00 NA NA 95.45 100.00 100.00 100.00 90.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA NA 94.74 100.00 100.00 90.91 NA NA 93.33 NA NA NA K intron_retention rho-4,CG1703 chrX + chrX_11498707_11498768 chrX_11498706_11498707;chrX_11498768_11498769 chrX_11498345_11498706;chrX_11498769_11499111 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.34 0.00 0.00 0.00 0.00 0.00 0.65 2.10 0.00 0.00 0.00 0.60 1.26 0.42 0.36 0.33 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.74 0.00 0.00 0.00 0.95 0.70 0.00 1.06 1.18 0.42 0.00 0.00 0.74 0.69 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 K cassette RpS12,I_chr3L_13016626_13017469 chr3L + chr3L_13016626_13017469 chr3L_13016626_13016831;chr3L_13016967_13017469 chr3L_13016832_13016966 chr3L_13016588_13016625;chr3L_13017470_13017569 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.98 100.00 99.96 100.00 100.00 100.00 100.00 100.00 100.00 99.84 100.00 99.95 100.00 100.00 100.00 100.00 99.97 99.99 100.00 100.00 99.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.98 100.00 100.00 99.98 100.00 100.00 K alternative_acceptor CG17508,RI_chr2R_1496995_1497120,chr2R_1497138_1497448.0 chr2R + chr2R_1496995_1497120;chr2R_1496995_1497637 chr2R_1496995_1497568 chr2R_1496895_1496994;chr2R_1497638_1497761 91.18 93.02 93.55 80.26 92.86 91.89 78.38 87.74 90.52 92.31 95.12 88.31 82.50 88.89 94.23 90.32 94.55 95.83 88.06 91.21 95.45 95.00 93.33 94.12 78.26 92.68 89.36 88.89 83.33 93.94 92.98 92.86 90.62 88.64 87.10 87.50 96.77 93.10 94.29 92.86 86.36 90.22 95.83 95.24 95.65 89.36 88.46 95.24 89.62 89.13 90.74 92.11 87.50 85.71 92.19 90.70 91.18 88.46 K jcn_only_AA tomosyn,I_chrX_12527065_12527950,I_chrX_12531219_12531470,I_chrX_12534873_12541731,I_chrX_12548772_12549203 chrX + chrX_12525847_12529764;chrX_12525847_12527950 chrX_12525847_12527945 chrX_12525686_12525846 12.50 NA 10.00 13.73 NA NA 6.98 8.89 9.59 NA 16.67 9.76 5.00 10.34 NA 10.00 NA 7.41 6.06 8.70 7.41 NA 16.67 NA 9.52 12.50 14.29 NA NA NA 13.04 NA 10.00 15.91 33.33 13.04 NA NA NA 12.50 NA 16.28 20.00 NA NA NA 16.00 NA 13.89 NA NA NA NA NA 16.13 NA NA NA K jcn_only_AA CG31150,Hmt-1 chr3R - chr3R_11674738_11674860 chr3R_11674750_11674860 chr3R_11674861_11675363;chr3R_11674622_11674737 2.04 2.60 1.98 3.96 1.48 2.96 2.67 2.88 0.88 4.79 2.42 2.02 1.52 2.23 1.26 0.47 1.84 1.76 3.19 2.04 2.42 1.46 2.40 1.82 1.60 3.17 1.44 2.78 1.61 1.30 1.11 2.80 2.66 1.53 2.12 2.17 1.09 2.53 1.44 2.29 3.12 2.24 1.76 1.31 0.83 2.88 2.40 1.31 1.83 2.29 2.65 4.12 2.77 2.57 0.87 0.70 0.52 1.54 K intron_retention FucTB chr2L - chr2L_9429590_9430022 chr2L_9429589_9429590;chr2L_9430022_9430023 chr2L_9429412_9429589;chr2L_9430023_9430429 20.00 NA NA NA NA NA NA 8.70 20.00 NA NA 15.38 NA NA NA 36.36 NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.53 NA NA NA 20.00 NA NA 23.08 NA NA NA NA NA NA NA NA NA K alternative_acceptor Pino,I_chr2L_1118700_1128128,RI_chr2L_1123440_1128128,RI_chr2L_1128073_1128128 chr2L - chr2L_1117517_1128128 chr2L_1128073_1128128 chr2L_1128129_1128228;chr2L_1117444_1117516 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Pp1-87B chr3R - chr3R_8249909_8250332 chr3R_8250239_8250332 chr3R_8250333_8251639;chr3R_8249673_8249908 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.80 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.67 100.00 100.00 100.00 99.55 100.00 100.00 100.00 99.81 99.63 99.22 100.00 99.37 100.00 100.00 100.00 100.00 100.00 K intron_retention CG14785,CG14786,ns3 chrX - chrX_1349983_1350055 chrX_1349982_1349983;chrX_1350055_1350056 chrX_1349783_1349982;chrX_1350056_1350840 20.84 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG8128,I_chrX_15591697_15591816 chrX + chrX_15591697_15592065;chrX_15591697_15592355 chrX_15591697_15591816 chrX_15591597_15591696;chrX_15592356_15592720 5.13 6.67 5.26 5.56 NA 6.25 4.35 3.33 11.11 0.00 14.29 13.79 12.50 5.56 4.76 3.12 0.00 9.52 5.88 6.25 0.00 8.33 3.45 8.33 15.00 5.00 3.33 6.25 4.76 0.00 4.76 4.35 3.23 7.41 0.00 4.55 12.00 7.69 7.69 4.44 11.11 2.70 6.25 9.52 11.11 2.50 7.14 4.35 2.94 9.09 4.88 4.55 6.67 6.67 4.76 3.70 3.12 3.23 K alternative_donor CG3164,I_chr2L_125267_126140,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_126228_128799 chr2L_126228_126309 chr2L_126141_126227;chr2L_128800_128899 1.96 1.96 1.71 3.54 1.32 1.28 2.27 1.81 1.37 1.31 0.93 1.33 1.45 1.18 1.39 2.54 1.17 1.32 1.79 2.01 1.63 2.89 2.08 2.82 3.20 1.03 4.13 4.71 2.67 2.45 1.64 2.97 2.74 1.61 2.90 3.31 1.84 1.47 2.12 2.78 3.03 1.37 1.55 1.87 2.27 2.40 2.61 1.92 1.22 4.38 2.94 1.94 1.89 3.80 1.01 3.33 3.73 2.05 K alternative_acceptor CG8798,I_chr3L_19602800_19602865 chr3L - chr3L_19604308_19604424 chr3L_19604362_19604424 chr3L_19604425_19604680;chr3L_19603902_19604307 9.52 3.85 10.00 16.33 4.35 4.55 13.16 15.15 10.00 2.94 19.05 12.00 19.05 22.22 6.67 12.50 10.71 6.67 16.67 14.00 10.71 4.65 8.51 7.89 0.00 3.33 11.76 5.77 6.12 6.82 5.41 10.53 5.08 8.89 13.33 5.88 8.70 6.25 2.86 4.65 7.50 10.91 6.25 10.87 12.00 9.52 15.00 8.47 16.67 15.79 5.56 16.67 4.76 12.50 12.12 9.52 14.81 7.69 K jcn_only_AD Lar,I_chr2L_19644636_19644695,REI_chr2L_19702035_19702145 chr2L + chr2L_19702026_19714888 chr2L_19702035_19714888 chr2L_19714889_19714989;chr2L_19701935_19702025 100.00 100.00 NA 96.88 95.65 100.00 97.06 100.00 97.18 97.67 100.00 98.00 NA NA 95.45 100.00 NA NA NA 100.00 NA 100.00 98.04 93.55 97.50 100.00 100.00 100.00 100.00 94.29 96.00 NA 100.00 100.00 NA 96.55 100.00 100.00 100.00 100.00 NA 93.48 NA 100.00 NA NA NA 88.00 100.00 NA 97.14 100.00 NA NA 96.15 NA NA NA K intron_retention CG31033,RI_chr3R_25658089_25658914 chr3R - chr3R_25653880_25653947 chr3R_25653879_25653880;chr3R_25653947_25653948 chr3R_25653795_25653879;chr3R_25653948_25654248 0.00 0.00 0.00 4.00 0.00 0.00 1.43 0.00 1.83 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 2.60 2.63 0.00 0.00 1.43 0.00 0.00 4.29 0.00 0.00 0.00 0.00 2.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 3.23 2.70 0.00 0.00 0.00 4.35 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 K alternative_acceptor CG7834,I_chr3R_25628402_25628511,I_chr3R_25632049_25632125,RI_chr3R_25658089_25658914 chr3R - chr3R_25628382_25628511 chr3R_25628402_25628511 chr3R_25628512_25628565;chr3R_25628302_25628381 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 2.49 1.15 0.00 0.00 0.00 1.45 0.63 0.00 0.67 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.86 0.00 0.49 0.00 0.00 0.58 0.00 0.51 0.48 0.56 0.31 0.00 0.54 0.00 K intron_retention drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9389940 chr2R_9389596_9389597;chr2R_9389940_9389941 chr2R_9389497_9389596;chr2R_9389941_9389954 100.00 94.74 95.45 100.00 100.00 100.00 100.00 97.87 98.25 93.33 94.44 97.67 95.65 100.00 96.55 95.74 94.44 100.00 97.14 97.73 100.00 100.00 100.00 96.77 100.00 95.45 100.00 100.00 100.00 100.00 96.15 100.00 97.96 100.00 95.83 100.00 100.00 100.00 94.44 96.00 96.00 100.00 100.00 100.00 100.00 95.83 96.67 100.00 96.67 100.00 96.88 95.65 100.00 100.00 96.97 100.00 100.00 100.00 K alternative_acceptor sda,I_chr3R_22742285_22742350,RI_chr3R_22750984_22752737 chr3R + chr3R_22769923_22769989 chr3R_22769923_22769968 chr3R_22769779_22769922;chr3R_22769990_22770999 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5006553_5008282;chr2R_5006553_5007804;chr2R_5006553_5008598 chr2R_5006553_5008568 chr2R_5006405_5006552;chr2R_5008599_5008637 1.61 2.27 2.38 2.50 3.03 3.03 1.52 2.44 1.20 0.00 0.00 0.00 2.70 3.57 2.33 2.00 3.45 3.57 2.56 0.98 3.23 0.00 1.28 0.00 0.00 5.26 1.72 0.00 0.00 0.00 6.45 1.96 1.47 1.67 0.00 1.69 0.00 0.00 0.00 1.06 1.75 1.35 2.94 0.00 0.00 1.69 0.00 1.47 1.43 1.75 1.61 0.00 2.33 0.00 2.08 1.85 1.79 1.35 K intron_retention CG14235,noncoding_24847,CG18809,noncoding_24848 chrX - chrX_19635199_19637988 chrX_19635198_19635199;chrX_19637988_19637989 chrX_19634765_19635198;chrX_19637989_19638057 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 90.00 100.00 NA 100.00 NA 94.74 100.00 88.89 NA 100.00 87.50 NA 100.00 100.00 91.67 100.00 94.12 100.00 NA 100.00 91.67 NA 100.00 100.00 88.89 100.00 NA 90.00 95.24 95.00 90.91 100.00 100.00 100.00 100.00 NA 93.33 100.00 100.00 100.00 100.00 93.75 K intron_retention CG8080,REI_chr2R_4979159_4979234,I_chr2R_4979276_4979936 chr2R - chr2R_4977527_4977587 chr2R_4977526_4977527;chr2R_4977587_4977588 chr2R_4977279_4977526;chr2R_4977588_4977990 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 3.57 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 1.64 0.00 3.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA RN-tre chr2R - chr2R_9873550_9875877 chr2R_9873601_9875877 chr2R_9875878_9875942;chr2R_9873495_9873549 99.38 100.00 99.04 99.44 100.00 100.00 100.00 99.38 98.88 100.00 98.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.03 96.83 99.35 99.23 99.12 98.41 100.00 99.08 100.00 100.00 98.86 100.00 99.02 96.36 98.72 98.77 100.00 99.15 99.00 99.32 97.99 100.00 100.00 100.00 100.00 100.00 99.31 100.00 98.36 98.06 98.68 99.31 100.00 98.39 100.00 99.17 99.07 100.00 97.06 K intron_retention CoRest,RF_chrX_19418197_19422673,F_chrX_19421868_19422673 chrX + chrX_19421868_19422667 chrX_19421867_19421868;chrX_19422667_19422668 chrX_19421807_19421867;chrX_19422668_19422856 7.41 12.50 20.00 16.67 NA NA NA 0.00 5.88 NA NA 19.05 NA NA 7.14 5.88 NA NA NA 11.11 NA 21.43 5.88 9.52 NA NA 7.14 NA 13.33 NA NA NA 25.00 NA 11.76 12.00 7.41 NA 5.00 7.14 NA 12.00 NA NA NA 0.00 15.38 10.00 7.41 0.00 NA NA NA NA NA 6.25 0.00 0.00 N jcn_only_AA CG8108,EI_chr3L_9859462_9859590,chr3L_9859594_9859878.0 chr3L + chr3L_9859462_9860377;chr3L_9859462_9859590 chr3L_9859462_9860413 chr3L_9859414_9859461;chr3L_9860414_9860844 90.18 94.96 89.04 82.89 93.06 90.41 81.82 94.44 90.54 86.21 92.11 90.18 87.27 94.12 92.73 85.19 95.52 97.14 96.97 83.94 84.34 94.12 87.85 88.71 88.89 82.35 90.18 83.33 85.37 88.89 47.26 84.31 88.78 91.00 89.66 75.00 90.22 90.15 94.26 87.39 90.00 94.77 91.30 85.53 92.54 94.51 89.74 91.38 88.41 92.86 88.27 87.88 99.04 96.19 91.67 94.50 97.79 98.78 K alternative_acceptor Rbcn-3A chrX - chrX_6137848_6137905 chrX_6137866_6137905 chrX_6137906_6138157;chrX_6137623_6137847 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG2316,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_213991,RI_chr4_210688_214450 chr4 - chr4_205241_205298 chr4_205241_205295 chr4_205175_205240;chr4_205299_205344 97.05 92.63 97.85 97.46 98.31 96.23 96.55 96.73 97.84 100.00 96.15 96.95 98.85 96.30 95.74 97.58 98.02 97.37 95.86 94.48 98.51 97.14 98.31 100.00 97.50 96.72 96.63 100.00 NA 98.04 96.69 98.18 97.44 93.71 95.65 97.37 100.00 97.96 95.92 95.96 93.33 96.79 97.73 96.88 100.00 100.00 96.83 96.77 95.76 97.65 96.36 93.55 92.31 100.00 98.06 96.05 96.95 98.48 K cassette eIF-4B,I_chr2RHet_2912605_2917250 chr2RHet + chr2RHet_2912605_2917250 chr2RHet_2912605_2915424;chr2RHet_2915525_2917250 chr2RHet_2915425_2915524 chr2RHet_2912544_2912604;chr2RHet_2917251_2917256 100.00 100.00 100.00 95.95 100.00 100.00 96.67 97.96 97.14 NA NA 100.00 NA 100.00 100.00 98.11 94.44 100.00 96.43 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 97.62 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 95.65 100.00 96.97 100.00 96.67 96.15 100.00 100.00 K intron_retention CG16791 chr3R - chr3R_17147142_17147517 chr3R_17147141_17147142;chr3R_17147517_17147518 chr3R_17146944_17147141;chr3R_17147518_17147834 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 8.62 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 2.13 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention rut,I_chrX_14718760_14718821 chrX - chrX_14686462_14687506 chrX_14686461_14686462;chrX_14687506_14687507 chrX_14685281_14686461;chrX_14687507_14688185 88.89 70.00 NA 45.45 88.89 70.00 NA 66.67 100.00 NA NA 87.50 NA 90.91 90.91 NA 87.50 66.67 75.00 84.00 NA 57.14 75.00 91.67 NA NA 90.00 NA 61.54 93.75 90.00 88.89 82.35 91.67 100.00 NA 100.00 72.73 92.86 100.00 NA 85.71 NA 94.12 91.67 100.00 87.50 84.00 92.31 NA 91.67 NA NA 87.50 81.82 NA NA 100.00 N jcn_only_AA CG8839,I_chr2R_8229288_8231538 chr2R - chr2R_8227962_8228070 chr2R_8228010_8228070 chr2R_8228071_8228645;chr2R_8227126_8227961 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention g,I_chrX_13628772_13629563 chrX - chrX_13627475_13627528 chrX_13627474_13627475;chrX_13627528_13627529 chrX_13627345_13627474;chrX_13627529_13627669 0.00 0.00 2.70 3.17 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.06 0.00 0.00 2.99 0.00 0.00 0.00 0.00 0.00 13.79 2.63 2.94 0.00 0.00 1.64 0.00 14.29 2.70 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 3.45 0.00 0.00 3.57 0.00 0.00 2.00 0.00 0.00 0.00 0.00 3.23 5.26 K alternative_donor gw,RI_chr4_679135_679703,I_chr4_679135_680299,RI_chr4_679135_680693,I_chr4_679135_681047,I_chr4_679135_681671 chr4 - chr4_679135_680185;chr4_679135_680594;chr4_679135_680270;chr4_679135_680503 chr4_679135_680546 chr4_679035_679134;chr4_680595_680603 0.00 0.00 20.00 6.67 0.00 0.00 0.00 13.04 4.76 NA 0.00 14.29 28.57 11.11 20.00 10.53 0.00 25.00 0.00 18.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 14.29 NA 0.00 16.67 0.00 0.00 0.00 0.00 NA 0.00 NA 7.69 0.00 0.00 NA 0.00 NA 0.00 6.25 NA 0.00 0.00 NA NA 0.00 NA NA NA K jcn_only_AD cryptocephal,noncoding_4181,I_chr2L_21311307_21311752,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21311033_21311752;chr2L_21311532_21311752;chr2L_21311215_21311752 chr2L_21311307_21311752 chr2L_21311753_21311852;chr2L_21310948_21311032 0.34 0.38 0.25 0.24 0.79 0.30 0.28 0.04 0.19 0.00 0.42 0.34 0.10 0.36 0.12 0.99 0.14 0.17 0.32 0.00 0.69 0.28 0.70 0.00 0.49 0.18 0.38 0.36 2.74 0.50 0.51 0.78 0.95 0.25 0.46 0.91 0.73 0.32 0.30 1.32 0.51 0.19 0.24 1.45 1.36 0.80 0.32 1.05 0.17 0.49 0.34 1.18 0.00 0.00 0.17 1.57 0.00 0.38 N alternative_donor CG10353,I_chrX_11775936_11778830,I_chrX_11778617_11778830,RI_chrX_11780885_11780988 chrX - chrX_11775936_11777234;chrX_11775936_11776058;chrX_11775936_11777220;chrX_11775936_11776142 chrX_11775936_11777133 chrX_11775836_11775935;chrX_11777235_11777654 40.48 50.00 38.24 40.00 44.12 51.61 56.00 62.79 53.26 46.67 68.00 55.00 60.87 57.14 35.00 51.02 51.72 54.29 52.38 41.89 50.00 34.21 39.02 40.00 32.00 40.00 48.65 23.53 11.11 36.67 35.71 27.78 38.64 48.21 33.33 32.43 42.86 43.33 36.36 42.31 36.36 37.70 47.06 36.36 17.39 40.00 50.00 34.48 45.45 33.33 47.22 42.11 36.84 35.29 29.03 39.13 47.83 40.48 K intron_retention tra2,REFI_chr2R_10491644_10491701 chr2R - chr2R_10490795_10490852 chr2R_10490794_10490795;chr2R_10490852_10490853 chr2R_10490666_10490794;chr2R_10490853_10491006 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 1.75 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention yrt chr3R - chr3R_9255492_9255914 chr3R_9255491_9255492;chr3R_9255914_9255915 chr3R_9254589_9255491;chr3R_9255915_9256472 0.00 NA 5.88 9.09 NA 5.26 3.23 0.00 11.76 NA 5.00 12.00 NA 14.29 0.00 0.00 12.50 NA 0.00 5.71 0.00 11.11 3.57 0.00 NA 5.56 4.35 NA 0.00 NA 0.00 5.00 0.00 0.00 0.00 NA 9.09 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.76 3.85 0.00 NA 0.00 0.00 0.00 0.00 4.00 0.00 K jcn_only_AA Pak3 chr3R - chr3R_12272857_12276688 chr3R_12272880_12276688 chr3R_12276689_12277858;chr3R_12272468_12272856 0.00 0.79 0.00 0.49 0.00 0.85 0.00 0.00 0.00 1.28 0.00 0.45 0.00 0.00 0.00 0.65 1.22 0.93 0.00 0.40 0.87 0.00 0.00 0.61 0.00 0.00 2.21 0.00 0.69 1.00 0.00 0.83 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.88 0.00 0.00 0.56 0.00 0.37 0.47 0.00 0.51 0.00 0.00 0.00 0.63 0.93 0.00 0.54 K alternative_acceptor Lap1 chr2R + chr2R_10823524_10823631;chr2R_10823524_10823599 chr2R_10823524_10823596 chr2R_10823191_10823523;chr2R_10823632_10823803 85.71 100.00 87.50 89.47 NA 75.00 75.00 81.25 84.62 66.67 NA 80.00 100.00 100.00 100.00 84.62 NA 100.00 100.00 92.86 100.00 81.82 81.82 85.71 62.50 100.00 92.31 62.50 100.00 80.00 85.71 NA 91.67 87.50 66.67 81.82 85.71 71.43 72.73 88.89 NA 76.92 85.71 80.00 100.00 100.00 NA 93.33 78.57 NA 90.91 100.00 NA 80.00 100.00 NA NA 85.71 K intron_retention I_chr3R_25875159_25875219,CG34317,CG7950,noncoding_20085,F_chr3R_25908044_25945850 chr3R + chr3R_25882757_25882861 chr3R_25882756_25882757;chr3R_25882861_25882862 chr3R_25882665_25882756;chr3R_25882862_25882884 6.90 4.00 13.21 8.86 17.65 8.00 10.53 7.14 15.52 3.45 19.05 11.67 7.89 5.88 10.00 2.33 0.00 7.32 0.00 5.61 0.00 3.45 8.11 8.33 3.57 6.15 12.12 14.29 6.52 0.00 6.58 5.77 7.27 6.98 12.50 2.70 10.00 8.33 0.00 4.60 9.33 8.64 10.81 0.00 7.46 4.90 6.90 3.88 8.33 7.69 6.00 15.00 4.08 0.00 4.48 5.71 3.08 3.35 K intron_retention psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6501376_6501447 chr2R_6501375_6501376;chr2R_6501447_6501448 chr2R_6501273_6501375;chr2R_6501448_6501631 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 2.14 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.48 0.00 4.14 0.64 1.05 0.00 2.27 2.06 0.00 7.69 0.00 0.00 0.00 0.52 0.74 0.00 0.00 0.00 0.00 0.00 1.30 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 K intron_retention CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_239007_239071 chr4_239006_239007;chr4_239071_239072 chr4_238874_239006;chr4_239072_239137 0.00 0.00 0.00 6.67 0.00 0.00 0.00 2.65 1.10 0.00 0.00 1.30 4.11 2.86 2.38 1.57 1.79 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 1.22 1.49 5.56 4.44 0.00 0.00 0.00 0.00 1.32 5.17 4.65 0.00 1.80 0.00 0.00 1.62 0.00 1.80 0.00 1.41 1.41 0.00 1.41 2.42 0.00 N jcn_only_AD spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20334731_20336286 chr2L_20334851_20336286 chr2L_20336287_20336404;chr2L_20334627_20334730 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG2519 chr3R - chr3R_1367559_1367613 chr3R_1367558_1367559;chr3R_1367613_1367614 chr3R_1367276_1367558;chr3R_1367614_1367924 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5191,E_chr3R_16391739_16398166,CG5412 chr3R + chr3R_16392332_16396323 chr3R_16392331_16392332;chr3R_16396323_16396324 chr3R_16392151_16392331;chr3R_16396324_16396371 9.52 17.65 14.29 17.65 NA 0.00 13.04 NA 14.81 6.67 NA 4.35 NA 0.00 21.43 NA NA NA 12.50 6.25 NA 10.71 0.00 9.09 12.50 NA 21.05 4.00 NA 0.00 NA NA 10.53 5.56 NA NA 12.00 6.67 10.00 16.67 14.29 6.45 NA 10.00 NA 9.52 4.76 5.88 10.71 0.00 10.53 NA NA NA 0.00 6.67 4.35 NA K intron_retention CG16817 chr3R + chr3R_5503809_5504283 chr3R_5503808_5503809;chr3R_5504283_5504284 chr3R_5503640_5503808;chr3R_5504284_5504370 0.54 1.33 0.54 0.63 0.78 0.00 0.67 0.38 0.45 0.00 0.41 0.00 0.00 0.69 1.28 0.30 0.00 0.65 0.00 0.40 0.00 1.22 0.60 0.00 0.00 0.61 1.68 2.59 3.07 0.57 0.00 0.00 0.00 1.12 0.81 0.37 0.98 0.71 0.71 0.44 1.45 0.86 0.40 0.31 0.00 0.00 0.74 0.00 0.46 0.67 1.80 0.00 0.86 0.90 0.49 0.25 0.71 0.60 K alternative_donor del chr2L - chr2L_21146886_21146948 chr2L_21146886_21146939 chr2L_21145134_21146885;chr2L_21146949_21147823 39.58 39.13 41.67 52.94 47.37 36.36 45.71 39.58 40.00 27.27 33.33 43.59 34.62 45.00 36.36 36.54 43.75 31.25 41.38 33.96 21.05 36.84 40.62 29.17 26.32 38.10 37.84 33.33 19.05 52.17 45.00 38.46 33.33 50.00 42.86 68.18 33.33 47.37 44.00 42.86 40.00 48.84 43.75 43.75 35.71 39.13 47.06 47.06 36.73 25.00 37.50 26.09 50.00 66.67 44.44 33.33 38.10 53.33 K intron_retention CG5514,RI_chr3R_23768206_23768306,Gp93 chr3R + chr3R_23767856_23768309 chr3R_23767855_23767856;chr3R_23768309_23768310 chr3R_23765429_23767855;chr3R_23768310_23768406 16.67 14.29 10.00 18.60 16.67 18.92 13.16 16.95 10.13 10.53 10.34 21.54 19.23 24.24 14.71 16.22 15.00 15.38 7.89 11.25 25.00 30.00 8.89 19.61 13.16 23.08 17.02 32.00 20.93 25.00 23.26 26.00 12.50 20.00 22.50 25.81 10.87 17.86 16.67 15.79 15.52 12.68 18.52 20.59 19.48 16.18 9.21 24.00 22.58 13.79 14.75 27.27 10.00 18.57 11.90 18.75 9.64 10.53 K intron_retention CG11033,I_chr3R_4879198_4879257,I_chr3R_4882567_4883651 chr3R + chr3R_4878298_4879257 chr3R_4878297_4878298;chr3R_4879257_4879258 chr3R_4878279_4878297;chr3R_4879258_4879357 67.95 NA NA 90.91 NA NA 63.64 61.11 62.50 NA 54.55 73.33 NA NA 91.67 63.64 NA 69.23 63.64 80.95 NA 83.33 64.71 64.29 NA 64.29 66.67 63.64 78.57 66.67 100.00 NA 75.00 75.00 NA 70.00 64.71 63.64 NA 66.67 NA 70.59 NA 75.00 NA NA NA 81.25 47.62 60.00 77.78 81.82 NA NA 83.33 NA NA NA K intron_retention CG4880 chrX + chrX_16781444_16781655 chrX_16781443_16781444;chrX_16781655_16781656 chrX_16780828_16781443;chrX_16781656_16782762 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31431 chr3R + chr3R_17696730_17697693 chr3R_17696729_17696730;chr3R_17697693_17697694 chr3R_17696406_17696729;chr3R_17697694_17697862 47.53 58.33 54.55 42.86 42.86 35.71 43.33 50.00 45.16 NA 33.33 58.62 60.00 40.00 56.25 50.00 40.00 41.18 40.00 45.95 NA NA 50.00 46.15 52.94 93.33 54.55 50.00 70.00 NA 47.06 NA 50.00 48.00 NA NA 38.46 NA 35.71 62.50 41.67 42.86 58.33 52.63 NA 42.86 58.33 46.67 55.56 NA 43.75 50.00 NA NA 52.00 45.45 NA 36.36 K alternative_donor for,I_chr2L_3627621_3631522 chr2L - chr2L_3627636_3631522;chr2L_3627636_3631804;chr2L_3627636_3631962 chr2L_3627636_3631976 chr2L_3626337_3627635;chr2L_3631977_3632151 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA NA NA K alternative_donor Pdp1,RI_chr3L_7809841_7810536,I_chr3L_7813130_7818683,I_chr3L_7831960_7846282 chr3L - chr3L_7810763_7811177 chr3L_7810763_7811168 chr3L_7810537_7810762;chr3L_7811178_7811323 75.61 72.00 93.75 87.88 78.12 66.67 75.00 84.44 72.60 84.38 88.46 83.33 94.74 71.88 63.16 83.33 80.00 74.07 78.12 82.28 80.95 66.67 81.25 74.29 74.19 81.25 66.67 74.07 63.16 65.00 72.55 63.16 75.61 81.25 78.57 72.41 75.93 76.00 73.81 74.47 52.94 77.59 82.76 74.42 66.67 80.00 76.47 72.41 78.95 82.61 72.73 76.47 66.67 77.78 85.29 71.43 70.83 70.00 K jcn_only_AD CG15618,RI_chrX_19759043_19759112 chrX - chrX_19759043_19759117 chrX_19759043_19759112 chrX_19758943_19759042;chrX_19759118_19759212 10.46 6.45 3.70 NA NA 9.38 4.76 8.11 13.33 13.64 18.18 0.00 13.64 NA 10.71 3.03 26.92 3.85 10.00 7.50 0.00 NA 2.78 7.32 NA 14.29 16.00 4.35 NA 30.00 38.46 4.00 11.29 13.64 8.00 24.00 8.77 12.82 12.50 11.76 NA 8.33 NA 34.62 17.24 6.90 12.00 15.38 10.20 10.00 13.89 NA 13.79 NA 8.33 NA 6.67 11.11 K intron_retention Ide,I_chr3L_20366301_20366354,I_chr3L_20368443_20368519 chr3L - chr3L_20367665_20367714 chr3L_20367664_20367665;chr3L_20367714_20367715 chr3L_20367462_20367664;chr3L_20367715_20367943 9.52 5.26 11.76 12.20 0.00 8.57 7.14 6.25 9.52 23.08 6.67 8.20 0.00 7.41 10.81 14.29 0.00 4.35 2.78 5.56 6.90 57.14 18.87 7.50 26.47 12.12 15.69 21.74 23.53 6.90 18.00 5.00 13.16 11.36 9.52 30.00 13.04 4.35 18.75 10.87 20.69 5.88 6.25 10.34 0.00 17.65 0.00 11.76 6.52 17.14 9.30 18.75 11.11 0.00 6.52 9.52 3.85 0.00 K jcn_only_AD uzip,I_chr2R_20916008_20916468 chr2R + chr2R_20899732_20900155;chr2R_20899685_20900155 chr2R_20899701_20900155 chr2R_20900156_20900229;chr2R_20899603_20899684 96.10 94.64 98.33 93.94 97.22 92.59 90.62 94.32 96.30 95.12 100.00 94.00 94.74 93.02 96.36 96.15 98.36 97.73 95.45 92.54 100.00 97.14 97.98 98.67 96.97 95.74 96.23 95.65 92.16 100.00 96.77 100.00 96.30 97.98 95.40 96.61 91.67 100.00 94.59 94.74 98.04 95.45 90.00 98.51 97.96 98.44 95.24 92.50 94.00 97.56 100.00 94.67 91.18 95.65 94.19 96.10 100.00 94.92 K alternative_acceptor CG31431 chr3R + chr3R_17696730_17697680;chr3R_17696730_17697703 chr3R_17696730_17697693 chr3R_17696406_17696729;chr3R_17697704_17697862 6.06 6.42 4.10 7.77 6.25 6.48 9.09 4.74 5.13 2.70 7.14 5.94 3.92 4.69 5.11 5.92 6.45 6.30 6.06 5.19 3.30 2.27 8.70 5.21 9.30 4.30 8.70 8.20 9.09 6.98 6.80 7.84 5.49 5.88 6.35 4.76 7.87 5.45 6.06 5.00 5.97 6.84 6.10 7.44 1.72 6.06 5.19 5.26 5.96 7.46 6.84 5.94 11.63 3.92 6.99 6.17 5.33 6.90 K intron_retention Su(var)3-9,I_chr3R_11088444_11088825 chr3R - chr3R_11085106_11085171 chr3R_11085105_11085106;chr3R_11085171_11085172 chr3R_11084232_11085105;chr3R_11085172_11085408 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 1.84 1.62 2.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD I_chr3L_18664773_18665233,GNBP2,I_chr3L_18667579_18667644 chr3L - chr3L_18668078_18668437;chr3L_18668078_18668318 chr3L_18668078_18668478 chr3L_18667645_18668077;chr3L_18668479_18668494 4.00 0.00 2.78 2.82 3.45 0.00 4.60 2.60 7.69 NA 10.34 8.22 9.68 2.86 4.35 4.35 2.50 4.76 4.76 9.57 3.03 4.00 2.50 10.00 17.39 3.23 2.86 NA NA NA 10.71 4.00 0.00 3.08 NA 0.00 15.00 NA 16.13 10.00 NA 5.48 10.81 0.00 9.09 3.85 17.14 0.00 6.25 12.12 3.57 4.00 NA NA 8.89 3.23 0.00 2.78 K intron_retention Mtor,I_chr2R_7747557_7747819 chr2R + chr2R_7747569_7747819 chr2R_7747568_7747569;chr2R_7747819_7747820 chr2R_7747435_7747568;chr2R_7747820_7747919 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 1.03 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 6.06 0.73 0.00 0.00 4.65 2.50 2.97 0.00 2.99 0.00 0.00 1.28 0.00 2.35 0.00 0.00 0.00 0.65 1.19 2.06 1.48 0.00 0.00 0.00 0.81 0.00 2.22 0.83 0.83 1.71 1.67 0.00 0.00 0.00 0.00 0.88 1.36 K multi_cassette Pfk,I_chr2R_5999081_6000140,E_chr2R_6001157_6001630 chr2R + chr2R_6000676_6002421 chr2R_6000676_6001047;chr2R_6001157_6001630;chr2R_6001740_6002421 chr2R_6001048_6001156;chr2R_6001631_6001739 chr2R_6000521_6000675;chr2R_6002422_6002610 10.00 NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.00 6.67 NA 11.11 NA NA NA NA NA NA 5.56 8.33 0.00 NA NA NA NA NA NA 10.00 NA NA NA NA 10.00 NA NA NA NA NA NA NA K jcn_only_AD CG31612,E_chr2L_21775447_21821182,CG11630 chr2L - chr2L_21775447_21795393 chr2L_21775447_21795245 chr2L_21775400_21775446;chr2L_21795394_21795445 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention I_chr3L_17833072_17833135,CG5567,MED19 chr3L - chr3L_17837815_17837879 chr3L_17837814_17837815;chr3L_17837879_17837880 chr3L_17836777_17837814;chr3L_17837880_17837994 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 K cassette CG32521,I_chrX_21077138_21082106,I_chrX_21077612_21082713,EI_chrX_21080561_21082106,I_chrX_21080906_21082713,CREF_chrX_21082827_21152068,EF_chrX_21094675_21152068 chrX - chrX_21080906_21082713;chrX_21077612_21082713 chrX_21080906_21082106,chrX_21077612_21082106;chrX_21082302_21082713 chrX_21082107_21082301 chrX_21077512_21077611;chrX_21082714_21082813 100.00 99.78 100.00 100.00 100.00 100.00 100.00 99.59 99.84 99.70 99.29 100.00 100.00 99.49 100.00 100.00 100.00 100.00 100.00 99.85 100.00 99.37 100.00 100.00 100.00 100.00 99.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.68 99.85 100.00 99.84 100.00 100.00 100.00 99.43 99.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.62 100.00 99.86 100.00 K intron_retention wdb,I_chr3R_23394314_23406731,I_chr3R_23394314_23406794,I_chr3R_23394314_23407159,RI_chr3R_23394314_23407186,I_chr3R_23394314_23407412,I_chr3R_23394314_23407715,I_chr3R_23394314_23407721,RI_chr3R_23406048_23406731,RI_chr3R_23406048_23406794,I_chr3R_23406048_23406928,RI_chr3R_23406048_23407402 chr3R - chr3R_23394314_23407723 chr3R_23394313_23394314;chr3R_23407723_23407724 chr3R_23394214_23394313;chr3R_23407724_23407815 4.20 4.38 4.24 3.56 0.00 5.04 5.41 5.36 4.73 2.56 14.13 5.14 4.17 3.10 4.35 2.75 2.90 10.29 4.91 2.33 10.24 15.74 5.23 3.75 6.90 7.25 9.85 6.59 9.72 3.62 3.27 3.05 2.09 4.05 6.25 6.67 3.35 3.79 3.80 3.69 3.92 5.73 4.20 5.85 2.31 3.72 3.74 3.53 3.56 10.19 6.74 4.42 4.44 3.57 3.61 3.81 5.26 1.65 K jcn_only_AA Fmr1,I_chr3R_5930712_5930781,I_chr3R_5934794_5935245,I_chr3R_5934801_5935537 chr3R - chr3R_5930712_5930790 chr3R_5930733_5930790 chr3R_5930791_5930881;chr3R_5930612_5930711 98.64 98.94 98.64 98.49 98.43 99.33 100.00 99.39 99.43 96.67 98.71 97.64 98.31 99.41 98.19 98.76 97.22 98.68 99.07 99.28 99.54 100.00 98.28 97.55 97.30 97.33 98.69 96.63 97.22 98.01 98.11 97.94 99.38 99.01 97.86 98.09 99.64 98.31 98.91 98.92 100.00 98.57 99.38 99.45 98.66 96.55 97.42 98.04 98.33 99.30 99.15 98.44 100.00 98.55 98.80 96.00 97.58 99.49 K intron_retention CG5931 chr3L - chr3L_15955151_15955214 chr3L_15955150_15955151;chr3L_15955214_15955215 chr3L_15954976_15955150;chr3L_15955215_15958041 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8177,E_chr3L_9756800_9772650,I_chr3L_9773534_9773635,I_chr3L_9774319_9774602 chr3L + chr3L_9756807_9757000 chr3L_9756806_9756807;chr3L_9757000_9757001 chr3L_9756676_9756806;chr3L_9757001_9757161 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 NA 100.00 100.00 95.65 100.00 100.00 97.96 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 96.88 100.00 96.30 100.00 97.30 100.00 100.00 100.00 NA 100.00 100.00 97.30 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 K alternative_acceptor CG17598 chrX - chrX_21938828_21939091 chrX_21938831_21939091 chrX_21939092_21940557;chrX_21938690_21938827 96.00 100.00 100.00 96.30 94.44 93.33 100.00 97.44 95.00 92.59 100.00 95.35 86.96 100.00 92.31 95.83 94.12 95.45 94.12 98.18 94.74 100.00 96.55 97.14 96.00 100.00 93.33 85.19 96.77 96.77 95.00 94.59 96.08 96.30 96.15 100.00 100.00 96.55 93.18 95.65 93.02 89.19 88.24 93.55 100.00 98.11 100.00 93.88 92.11 96.00 97.14 100.00 95.65 96.88 100.00 97.78 95.35 91.67 K intron_retention RpL3,E_chr3R_7047964_7050565,I_chr3R_7048451_7049116,I_chr3R_7048452_7048540,I_chr3R_7048452_7049579,snoRNA:Me18S-A425,snoRNA:Psi28S-291,I_chr3R_7049970_7050189 chr3R + chr3R_7048452_7048540 chr3R_7048451_7048452;chr3R_7048540_7048541 chr3R_7048352_7048451;chr3R_7048541_7048564 98.33 100.00 100.00 97.62 100.00 100.00 100.00 100.00 98.51 100.00 100.00 98.00 100.00 100.00 100.00 94.12 100.00 94.44 100.00 98.57 100.00 70.83 100.00 97.62 100.00 95.65 98.15 95.56 94.44 94.44 90.91 90.00 96.67 97.44 100.00 97.30 97.87 100.00 97.56 100.00 100.00 98.33 100.00 96.15 97.22 97.30 96.43 100.00 98.46 97.78 97.50 100.00 96.15 95.65 96.97 100.00 97.62 100.00 K intron_retention mri,RI_chr3L_201061_201173,I_chr3L_212783_212843 chr3L + chr3L_201061_201173 chr3L_201060_201061;chr3L_201173_201174 chr3L_200990_201060;chr3L_201174_201273 66.67 NA 70.00 63.16 77.78 NA NA 70.00 76.92 NA NA NA NA NA 87.50 NA NA NA NA 63.64 NA 46.67 66.67 66.67 NA NA 90.00 72.73 NA NA 80.00 NA NA 70.00 NA NA 30.77 NA NA NA NA NA NA 60.00 NA 63.64 63.64 NA 73.33 63.64 50.00 NA NA NA NA NA 54.55 NA K intron_retention Edem1,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1798310_1798525 chrX_1798309_1798310;chrX_1798525_1798526 chrX_1798215_1798309;chrX_1798526_1798625 92.86 NA NA 94.74 90.00 100.00 100.00 94.74 95.24 NA NA 92.86 90.00 100.00 100.00 100.00 88.89 NA 90.91 93.33 NA NA 92.86 90.91 NA 88.89 90.00 90.00 NA NA 100.00 NA 100.00 94.44 NA 90.00 NA NA 88.89 92.31 100.00 90.91 NA 100.00 100.00 100.00 92.31 84.62 92.31 NA 90.91 NA NA NA 92.86 87.50 87.50 NA K alternative_acceptor dre4,I_chr3L_1875590_1875651,F_chr3L_1877432_1877517 chr3L - chr3L_1875587_1875651 chr3L_1875590_1875651 chr3L_1875652_1875751;chr3L_1875490_1875586 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.51 0.00 0.00 0.00 1.69 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD MB8.chr3R.pasa.66,alpha-Est10,I_chr3R_3314337_3319450 chr3R - chr3R_3314337_3317062 chr3R_3314337_3314410 chr3R_3314237_3314336;chr3R_3317063_3317412 0.00 NA NA 50.00 NA NA NA 0.00 0.00 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor e(y)3,I_chrX_19530503_19530884,I_chrX_19530503_19531405 chrX - chrX_19530473_19531650 chrX_19530503_19531650 chrX_19531651_19532371;chrX_19530403_19530472 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 97.44 100.00 100.00 100.00 100.00 100.00 95.00 95.24 100.00 95.24 97.37 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 95.45 96.55 98.53 93.94 100.00 98.11 100.00 95.65 100.00 96.88 100.00 100.00 100.00 97.30 97.30 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 K intron_retention CG3209,RI_chr2R_19957766_19960227 chr2R + chr2R_19959748_19960227 chr2R_19959747_19959748;chr2R_19960227_19960228 chr2R_19959680_19959747;chr2R_19960228_19960327 33.33 27.27 29.63 54.55 25.00 41.18 42.31 40.00 35.29 43.48 24.32 17.74 77.78 40.91 40.00 32.14 12.00 10.29 56.00 22.09 17.65 70.00 34.62 25.81 35.48 24.14 43.59 41.38 40.74 45.16 23.53 26.09 45.45 20.45 54.55 26.67 23.88 43.18 26.15 41.07 55.00 31.91 50.00 30.77 22.86 26.19 33.33 53.85 33.33 57.14 34.88 43.75 17.07 26.83 27.27 29.41 20.37 27.03 K alternative_acceptor CG11006,F_chr3L_12799159_12799339 chr3L + chr3L_12799438_12800192;chr3L_12799438_12799955;chr3L_12799438_12800078;chr3L_12799438_12799967 chr3L_12799438_12799952 chr3L_12799340_12799437;chr3L_12800193_12800930 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 NA 6.25 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 K alternative_acceptor CG7203,cdc14,RI_chr2L_7806524_7806667 chr2L - chr2L_7803744_7804570;chr2L_7803044_7804570 chr2L_7803577_7804570 chr2L_7804571_7804915;chr2L_7802415_7803043 16.67 NA NA 33.33 NA NA NA NA 16.67 NA NA 40.00 NA NA 20.00 NA NA NA NA 40.00 NA 20.00 12.50 25.00 NA NA NA NA 16.67 NA NA NA 20.00 NA NA 28.57 7.69 11.11 16.67 NA NA 16.67 NA 16.67 14.29 33.33 NA 14.29 14.29 NA NA NA 9.09 NA NA 33.33 NA 33.33 K jcn_only_AD Tak1,I_chrX_20388150_20389255 chrX - chrX_20388150_20388725;chrX_20388150_20389255 chrX_20388150_20392250 chrX_20388050_20388149;chrX_20392251_20392299 57.76 61.78 56.64 65.45 57.02 61.05 56.11 65.41 54.78 57.28 56.64 64.47 57.61 53.85 55.05 50.88 56.73 49.69 57.76 62.00 66.67 54.23 57.32 66.67 54.81 54.72 63.58 48.94 62.77 63.83 58.52 63.92 64.13 57.80 60.19 55.56 67.36 65.06 62.71 62.30 62.89 58.10 67.62 56.64 73.97 52.56 47.78 54.17 63.72 54.35 45.20 51.52 53.12 60.20 53.64 63.87 48.05 65.57 K alternative_last_exon alpha-Spec,dlt chr3L - chr3L_1789102_1795198 chr3L_1793501_1795198 chr3L_1789017_1789101 chr3L_1789625_1793500 chr3L_1795199_1795295 18.69 25.58 22.22 10.87 27.50 27.03 9.68 13.48 16.03 23.08 18.92 14.41 12.50 13.24 33.33 12.23 17.31 30.23 13.64 17.35 23.53 16.85 16.82 22.73 10.34 15.00 25.86 38.18 12.73 17.14 14.71 29.03 26.92 14.85 13.64 6.06 31.37 37.50 35.42 19.79 12.73 19.23 16.07 17.57 42.86 22.06 26.53 14.78 18.69 17.14 19.10 16.13 28.00 45.00 18.33 26.19 36.36 25.00 K alternative_donor nes chr3L - chr3L_19253331_19253636;chr3L_19253331_19253609;chr3L_19253331_19253676;chr3L_19253331_19253648;chr3L_19253331_19253745;chr3L_19253331_19253764 chr3L_19253331_19253632 chr3L_19253215_19253330;chr3L_19253765_19253779 63.64 60.00 58.33 53.85 63.64 55.56 52.63 52.63 62.50 57.14 66.67 68.75 50.00 63.64 50.00 64.29 71.43 62.50 63.64 56.25 50.00 50.00 71.43 75.00 63.64 70.00 60.00 60.00 70.00 100.00 54.55 60.00 75.00 52.63 85.71 66.67 42.86 50.00 70.00 71.43 57.14 66.67 71.43 85.71 62.50 69.23 55.56 78.57 63.64 75.00 66.67 60.00 100.00 100.00 53.33 50.00 60.00 80.00 K alternative_acceptor aPKC,I_chr2R_10833552_10833654,RI_chr2R_10849347_10850391 chr2R - chr2R_10833552_10833654;chr2R_10832733_10833654 chr2R_10833596_10833654 chr2R_10833655_10833754;chr2R_10832714_10832732 95.65 94.44 95.00 95.74 87.50 93.33 97.96 98.00 94.83 80.00 90.91 95.24 95.65 96.43 94.12 94.55 94.74 88.24 96.30 97.14 93.33 100.00 94.29 92.00 100.00 92.31 95.24 90.00 95.65 100.00 95.83 85.71 96.43 96.00 96.00 96.00 100.00 100.00 92.86 97.62 92.59 94.74 86.36 96.15 88.24 97.44 100.00 92.86 97.78 96.30 96.97 100.00 92.31 100.00 95.45 100.00 100.00 95.12 K intron_retention CG1544 chr3R + chr3R_27025663_27026125 chr3R_27025662_27025663;chr3R_27026125_27026126 chr3R_27025464_27025662;chr3R_27026126_27026287 0.00 NA NA NA NA NA NA NA 5.00 NA NA NA NA NA 7.14 NA NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA NA NA K jcn_only_AD Shawn_Tyler,CG14216,Zw chrX + chrX_19558903_19558967 chrX_19558906_19558967 chrX_19558968_19559226;chrX_19558618_19558902 97.96 94.94 97.18 98.94 97.73 98.11 97.65 100.00 97.42 96.77 92.31 99.21 100.00 100.00 98.85 98.51 96.83 98.55 100.00 97.59 94.12 93.44 99.18 97.96 97.78 100.00 95.00 93.62 98.59 100.00 98.45 97.37 95.92 98.86 100.00 98.31 96.58 97.96 99.07 99.09 98.08 97.78 96.67 96.46 94.94 98.72 96.74 97.44 98.28 100.00 93.48 96.49 100.00 94.59 98.48 97.67 96.00 100.00 K intron_retention CG8929 chr2R + chr2R_16214899_16215831 chr2R_16214898_16214899;chr2R_16215831_16215832 chr2R_16214792_16214898;chr2R_16215832_16216526 16.91 14.81 17.14 15.91 15.79 15.38 17.65 19.51 18.75 NA 19.05 21.54 22.73 18.75 22.22 39.02 16.67 12.50 29.41 18.33 19.05 8.82 16.36 14.58 15.38 12.82 41.38 16.00 34.38 5.88 34.55 9.09 5.26 26.19 20.69 22.50 8.70 10.34 12.12 29.41 45.00 16.67 28.57 17.86 12.00 10.42 9.26 15.38 21.43 15.15 18.57 17.24 9.09 9.09 19.44 19.35 10.26 11.63 K intron_retention Hrb87F chr3R - chr3R_9484236_9484487 chr3R_9484235_9484236;chr3R_9484487_9484488 chr3R_9484184_9484235;chr3R_9484488_9484529 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.86 99.88 99.78 100.00 100.00 100.00 99.86 100.00 100.00 99.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Mlf,noncoding_7111,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824832_11825183 chr2R_11824831_11824832;chr2R_11825183_11825184 chr2R_11824765_11824831;chr2R_11825184_11825384 28.57 34.21 31.25 7.14 26.67 18.18 72.22 42.31 28.05 22.22 22.73 36.07 52.63 39.13 37.93 31.71 41.38 56.25 34.62 28.21 30.00 23.88 23.81 35.42 24.00 7.41 28.57 35.42 33.33 21.21 28.57 28.57 10.87 30.23 32.00 20.93 21.74 31.82 32.20 34.04 17.65 40.00 36.84 26.83 14.29 24.39 22.22 23.08 29.82 20.93 29.27 35.71 23.33 33.33 27.03 24.32 24.07 7.41 N intron_retention Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16107821_16110644 chr3L_16107820_16107821;chr3L_16110644_16110645 chr3L_16107721_16107820;chr3L_16110645_16111208 100.00 NA NA NA NA NA NA NA 100.00 100.00 100.00 100.00 NA NA NA NA NA NA NA NA NA 58.62 100.00 NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 K intron_retention yuri,F_chr2L_15260838_15261717 chr2L - chr2L_15262627_15262969 chr2L_15262626_15262627;chr2L_15262969_15262970 chr2L_15262375_15262626;chr2L_15262970_15263128 0.87 2.44 1.41 1.82 0.00 1.77 0.00 1.92 2.50 0.00 0.00 3.11 7.87 2.56 1.75 3.25 0.00 0.68 1.82 2.15 1.79 1.42 2.48 0.62 0.00 0.00 1.68 0.00 0.00 0.67 3.20 1.37 0.60 2.72 2.26 0.00 1.54 0.00 0.00 1.89 0.00 1.48 3.03 0.52 0.00 0.47 2.40 0.00 1.56 0.00 1.20 0.00 0.00 0.87 0.00 0.00 0.00 0.00 K alternative_acceptor CG40042 chr2LHet - chr2LHet_168746_168843 chr2LHet_168796_168843 chr2LHet_168844_169120;chr2LHet_168463_168745 2.38 2.81 1.90 3.42 1.05 3.28 2.46 2.15 2.12 3.81 2.04 2.01 2.22 2.46 0.88 2.15 2.76 2.17 2.16 1.81 0.73 2.68 2.30 3.65 4.95 2.38 2.30 3.31 3.15 2.63 5.79 2.99 2.56 2.51 1.48 1.97 2.50 3.39 2.92 2.44 1.97 1.94 2.33 3.09 0.65 2.21 2.38 2.30 2.01 3.31 3.40 3.64 0.44 2.63 1.69 2.91 1.73 1.36 K alternative_acceptor I_chr2R_8626010_8636417,CG12488,I_chr2R_8637781_8637845 chr2R + chr2R_8637781_8637845 chr2R_8637781_8637842 chr2R_8637681_8637780;chr2R_8637846_8637945 92.86 89.29 86.21 93.33 94.74 89.66 90.91 93.10 94.29 94.44 86.96 90.00 94.74 94.44 96.55 94.12 92.86 81.82 94.74 95.65 94.12 100.00 83.78 97.30 83.33 92.59 91.18 96.00 96.00 93.75 92.86 86.96 90.70 89.19 91.67 81.48 91.30 93.55 94.23 98.15 93.55 93.75 85.71 86.96 83.72 92.11 95.65 91.67 88.37 92.86 91.67 85.00 93.10 96.67 93.55 96.67 88.89 92.31 N intron_retention Dscam,F_chr2R_3219886_3228832,F_chr2R_3226043_3235353,F_chr2R_3227948_3235353,F_chr2R_3228738_3235353,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3232857_3232989 chr2R_3232856_3232857;chr2R_3232989_3232990 chr2R_3232566_3232856;chr2R_3232990_3233013 100.00 NA NA 100.00 NA 100.00 NA 100.00 100.00 NA NA 52.17 NA NA NA NA NA NA NA 41.18 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N jcn_only_AA RpS20 chr3R + chr3R_16647996_16648154 chr3R_16647996_16648139 chr3R_16647888_16647995;chr3R_16648155_16648294 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.60 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG14425,Sxl,CG14425_Sxl,CEF_chrX_6984538_6992033 chrX - chrX_6986156_6991977 chrX_6986204_6991977 chrX_6991978_6992086;chrX_6985708_6986155 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA K intron_retention CG32373,CG12262 chr3L + chr3L_7713517_7713576 chr3L_7713516_7713517;chr3L_7713576_7713577 chr3L_7713160_7713516;chr3L_7713577_7714693 15.38 15.38 5.41 20.45 7.41 7.41 20.00 6.52 9.68 8.33 28.57 9.84 14.29 21.05 22.50 54.05 10.53 9.68 11.11 7.41 0.00 19.10 15.91 12.35 22.22 12.12 17.86 28.26 26.42 27.78 19.35 25.93 25.81 14.58 11.43 18.87 10.94 10.53 14.49 20.93 31.15 11.11 5.26 13.56 20.97 27.27 10.14 30.00 17.86 20.00 7.59 15.38 11.43 14.93 17.24 15.69 6.74 18.37 K alternative_acceptor CG11790,CG11791 chr3R + chr3R_20875669_20876344;chr3R_20875669_20876354 chr3R_20875669_20876902 chr3R_20875600_20875668;chr3R_20876903_20877278 19.23 26.47 10.00 21.88 25.81 10.71 17.31 12.28 15.00 44.44 7.69 12.28 29.73 6.90 10.53 11.76 6.45 32.43 16.28 12.31 4.00 10.87 23.08 21.62 8.33 8.82 11.11 23.08 22.86 18.18 9.76 25.00 17.50 10.34 19.35 12.50 29.27 24.00 21.21 27.85 28.57 14.29 12.00 25.93 35.56 24.14 28.57 37.74 8.47 32.00 25.58 19.23 46.88 12.90 19.15 30.77 35.42 53.52 K intron_retention sol chrX + chrX_21222794_21222886 chrX_21222793_21222794;chrX_21222886_21222887 chrX_21222781_21222793;chrX_21222887_21223512 83.33 75.00 90.00 87.50 88.89 100.00 88.89 95.00 73.08 NA 71.43 80.95 88.89 66.67 83.33 86.67 90.00 90.00 100.00 72.73 72.73 96.15 68.75 86.67 83.33 90.91 85.71 66.67 NA 84.62 75.00 NA 56.25 86.67 81.82 100.00 75.00 NA 90.00 77.78 NA 82.61 87.50 62.50 87.50 75.00 NA 57.14 83.33 NA 82.35 NA NA NA 64.71 NA NA 80.00 K alternative_donor CG13197,RI_chr2R_7580554_7581978 chr2R + chr2R_7580051_7581978 chr2R_7580554_7581978 chr2R_7581979_7582078;chr2R_7580004_7580050 6.67 NA NA 4.00 8.33 NA 5.00 4.76 3.45 NA 37.50 4.00 NA 7.69 0.00 3.70 NA 15.38 NA 3.33 18.18 9.09 11.11 10.00 6.67 5.88 11.11 18.18 23.08 NA 8.70 NA 8.33 4.55 NA 10.00 6.67 NA 5.00 4.76 0.00 4.76 10.00 6.67 NA 7.69 7.69 8.33 6.45 5.88 8.33 NA 8.33 NA 7.69 5.00 0.00 5.56 K intron_retention Iswi chr2R + chr2R_8524243_8524328 chr2R_8524242_8524243;chr2R_8524328_8524329 chr2R_8524226_8524242;chr2R_8524329_8524495 92.86 NA NA 93.33 NA NA 92.86 87.50 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA 92.31 NA NA NA NA NA NA NA NA NA K cassette CG42595,I_chr2RHet_3155517_3174709,RI_chr2RHet_3175044_3179353,RI_chr2RHet_3179300_3179586,I_chr2RHet_3179481_3179586 chr2RHet - chr2RHet_3175044_3179353 chr2RHet_3175044_3179091;chr2RHet_3179297_3179353 chr2RHet_3179092_3179296 chr2RHet_3174944_3175043;chr2RHet_3179354_3179453 100.00 100.00 100.00 100.00 95.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG4294 chr2R - chr2R_18488876_18489034 chr2R_18488875_18488876;chr2R_18489034_18489035 chr2R_18488842_18488875;chr2R_18489035_18489320 42.86 NA NA 31.25 NA NA 42.86 30.77 44.44 NA NA NA 54.55 NA NA 23.08 NA NA 45.45 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA 53.33 NA NA NA NA NA NA NA 43.75 NA NA NA NA NA NA 38.46 NA NA NA NA NA NA NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2389980 chrX_2387249_2388436;chrX_2388671_2389073;chrX_2389272_2389980 chrX_2388437_2388670;chrX_2389074_2389271 chrX_2387149_2387248;chrX_2389981_2390066 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA 75.00 NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA K intron_retention CG42348,I_chr3L_20149990_20151579 chr3L - chr3L_20149099_20151579 chr3L_20149098_20149099;chr3L_20151579_20151580 chr3L_20149001_20149098;chr3L_20151580_20151679 1.87 0.00 5.26 7.14 0.00 0.00 4.44 2.00 1.79 0.00 6.67 1.15 0.00 2.63 7.69 3.12 0.00 12.90 0.00 1.25 4.65 6.12 3.61 3.61 8.00 2.33 2.27 NA 5.71 1.92 0.00 0.00 2.67 2.63 0.00 5.77 1.94 4.12 2.02 0.00 0.00 2.88 0.00 0.00 0.00 0.00 0.00 1.72 0.00 1.92 0.00 0.00 0.00 0.00 3.51 2.04 1.82 0.00 K alternative_acceptor RluA-2,I_chr2L_10480906_10481097 chr2L + chr2L_10481571_10481621;chr2L_10481571_10481646 chr2L_10481571_10481629 chr2L_10481509_10481570;chr2L_10481647_10481707 0.00 NA 0.00 10.00 NA 14.29 5.26 0.00 0.00 NA 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 7.41 12.50 0.00 7.14 0.00 0.00 15.38 0.00 NA 16.67 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 5.00 0.00 5.56 0.00 0.00 0.00 5.56 0.00 10.53 0.00 8.33 0.00 0.00 0.00 18.18 0.00 16.67 0.00 0.00 K jcn_only_AA nAcRbeta-21C chr2L + chr2L_545307_545370 chr2L_545307_545348 chr2L_545131_545306;chr2L_545371_545564 0.17 0.29 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.50 0.17 0.38 0.00 0.26 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.98 1.04 0.00 1.05 0.00 0.00 1.36 4.19 0.00 0.37 0.00 0.00 0.00 0.68 0.91 0.71 2.28 0.51 0.43 0.40 0.00 0.38 0.90 0.00 0.93 0.16 3.67 0.66 0.00 0.00 0.38 0.65 0.80 0.21 0.30 K intron_retention Mi-2 chr3L - chr3L_19881205_19881331 chr3L_19881204_19881205;chr3L_19881331_19881332 chr3L_19875754_19881204;chr3L_19881332_19881575 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG13384 chr2L + chr2L_8384517_8384699 chr2L_8384541_8384699 chr2L_8384700_8384895;chr2L_8384486_8384516 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 K alternative_acceptor CG11337,I_chr3R_27230306_27230374,RI_chr3R_27230320_27230374 chr3R - chr3R_27230320_27230374;chr3R_27230306_27230374 chr3R_27230327_27230374 chr3R_27230375_27230410;chr3R_27230220_27230305 8.33 NA NA 8.33 NA NA 8.33 6.67 14.29 NA NA 10.00 NA NA NA 6.67 NA NA 11.11 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA 0.00 NA NA 12.50 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 9.09 NA NA NA K intron_retention CG32138 chr3L + chr3L_14062028_14062185 chr3L_14062027_14062028;chr3L_14062185_14062186 chr3L_14061908_14062027;chr3L_14062186_14062253 24.53 27.91 33.33 42.86 22.22 32.26 35.90 25.77 24.53 7.94 25.93 18.75 28.57 34.88 34.62 24.00 27.27 17.28 33.33 26.61 26.67 14.29 21.35 22.00 14.89 18.37 18.03 30.43 31.03 28.33 15.66 34.29 25.49 23.66 31.25 17.31 19.70 24.00 20.34 25.81 16.36 21.62 23.68 16.22 8.11 23.21 35.48 27.12 30.59 14.04 33.87 27.91 28.57 15.15 34.55 24.32 15.00 24.14 K jcn_only_AD eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341925_20342041;chr3L_20341636_20342041;chr3L_20341509_20342041;chr3L_20341865_20342041;chr3L_20341486_20342041;chr3L_20341522_20342041;chr3L_20341751_20342041;chr3L_20341629_20342041;chr3L_20341598_20342041;chr3L_20341759_20342041 chr3L_20341530_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 0.00 0.00 1.67 0.00 0.00 0.00 0.00 1.64 0.70 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 1.79 4.35 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.76 NA 0.00 0.00 0.00 0.00 1.69 0.00 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.70 2.13 0.00 2.50 3.33 NA 1.02 0.00 1.54 1.23 K intron_retention CG13585,I_chr2R_20419710_20419962,E_chr2R_20420167_20420418 chr2R + chr2R_20419258_20419962 chr2R_20419257_20419258;chr2R_20419962_20419963 chr2R_20419190_20419257;chr2R_20419963_20420062 14.04 8.70 0.00 12.00 NA 33.33 25.00 13.79 16.67 14.29 33.33 20.00 17.65 NA 15.00 16.00 NA 36.84 7.69 19.61 26.32 16.67 14.29 9.52 21.43 12.50 18.18 NA NA 5.26 13.33 0.00 NA 26.09 14.29 11.11 9.68 5.88 15.38 9.09 NA 17.95 6.67 0.00 13.33 8.11 12.50 7.69 22.50 12.50 17.65 25.00 13.79 12.50 21.05 15.38 10.00 3.45 K intron_retention CG17574,I_chr2R_8737398_8737465 chr2R - chr2R_8737402_8737465 chr2R_8737401_8737402;chr2R_8737465_8737466 chr2R_8736915_8737401;chr2R_8737466_8737543 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1582,I_chrX_10792251_10792314 chrX - chrX_10793097_10793156 chrX_10793096_10793097;chrX_10793156_10793157 chrX_10792315_10793096;chrX_10793157_10793300 0.00 0.00 2.04 2.38 0.00 2.63 1.32 4.35 3.23 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 2.94 3.26 0.00 5.17 4.17 0.00 3.23 2.56 9.09 0.00 4.69 0.00 6.52 10.53 0.00 4.76 3.12 0.00 0.00 0.00 4.30 0.00 0.00 2.78 3.45 0.00 0.00 0.00 0.00 0.00 3.51 8.57 2.94 5.00 0.00 0.00 0.00 0.00 3.57 0.00 N intron_retention Gprk2 chr3R + chr3R_27259611_27259861 chr3R_27259610_27259611;chr3R_27259861_27259862 chr3R_27259181_27259610;chr3R_27259862_27259919 100.00 NA 100.00 100.00 NA NA 100.00 100.00 61.29 NA NA 72.73 100.00 100.00 100.00 100.00 100.00 NA 100.00 60.00 NA NA 100.00 100.00 100.00 NA 100.00 NA NA NA 66.67 NA NA 100.00 NA NA NA NA 100.00 100.00 NA 48.48 100.00 NA NA NA NA NA 64.52 NA 58.82 NA NA NA 50.00 NA NA NA K jcn_only_AA egr,I_chr2R_5970832_5970930,I_chr2R_5970999_5971058 chr2R + chr2R_5970832_5970930;chr2R_5970832_5970926 chr2R_5970832_5970908 chr2R_5970767_5970831;chr2R_5970931_5970998 78.19 75.17 78.37 82.93 76.49 74.67 82.88 80.78 78.28 75.00 74.20 77.16 80.31 78.97 77.55 82.12 75.21 80.08 80.18 79.27 78.19 75.57 77.86 76.54 80.16 81.37 71.38 82.70 77.05 79.07 80.19 80.28 79.52 80.43 78.22 69.84 73.01 76.50 76.36 75.91 83.40 77.25 76.76 80.37 75.56 78.36 77.61 79.17 81.69 73.07 76.83 77.98 75.48 75.64 82.86 79.21 76.63 78.72 K cassette CG7956 chr3R + chr3R_17350372_17351248 chr3R_17350372_17350806;chr3R_17351023_17351248 chr3R_17350807_17351022 chr3R_17350312_17350371;chr3R_17351249_17351485 8.57 8.57 6.25 4.12 6.45 4.11 4.90 4.84 7.84 4.88 9.62 7.69 3.70 5.63 6.32 7.95 7.94 10.77 8.33 7.10 5.26 1.61 7.23 10.00 13.51 9.80 7.55 10.00 18.75 7.46 16.39 12.77 12.79 8.76 13.46 13.64 8.57 9.26 12.90 8.55 10.53 8.00 7.94 11.29 12.50 9.76 7.27 14.74 6.45 11.76 9.76 10.00 16.00 9.09 6.49 10.20 7.14 10.20 K alternative_donor lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3955872_3957375;chr2R_3955586_3957375;chr2R_3955788_3957375 chr2R_3955517_3957375 chr2R_3957376_3957784;chr2R_3955509_3955516 96.30 100.00 96.55 96.30 98.25 100.00 96.00 98.53 98.62 87.50 100.00 97.83 100.00 97.50 97.40 95.92 98.18 96.36 94.23 97.96 97.73 96.00 62.50 80.00 75.00 96.43 50.00 57.14 73.91 88.89 92.54 100.00 94.44 97.78 100.00 71.43 94.44 90.00 90.00 87.50 87.50 97.60 98.00 92.86 100.00 100.00 NA 85.19 96.30 NA 25.00 87.50 100.00 NA 97.53 NA NA 96.30 K alternative_donor Pp2C1,I_chrX_4577968_4578285 chrX - chrX_4577968_4579144 chrX_4577968_4578285 chrX_4577868_4577967;chrX_4579145_4580826 2.56 1.92 0.00 9.09 2.13 2.70 0.00 2.00 2.06 2.50 5.00 4.76 5.56 7.14 3.23 4.35 0.00 0.00 0.00 1.61 5.26 3.85 0.00 3.70 0.00 0.00 3.51 6.67 3.85 2.56 6.25 9.52 2.13 1.56 0.00 3.23 1.69 1.47 2.47 3.03 0.00 1.27 0.00 0.00 0.00 8.70 0.00 2.86 3.03 5.00 1.72 0.00 4.55 4.35 3.23 5.26 4.35 3.57 K intron_retention Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11835112_11835668 chr2R_11835111_11835112;chr2R_11835668_11835669 chr2R_11834432_11835111;chr2R_11835669_11836215 84.38 76.60 79.17 83.61 84.44 88.10 95.24 91.84 90.32 86.36 82.86 79.71 75.00 79.31 87.23 80.00 90.62 85.71 88.24 80.52 84.38 85.19 83.33 82.05 91.18 97.50 79.22 81.48 90.20 81.54 89.47 83.02 82.95 86.79 76.92 82.05 78.45 85.51 84.15 85.71 93.22 83.67 89.29 89.66 80.72 81.52 84.13 88.46 90.62 72.97 86.59 84.48 79.31 81.48 89.74 79.22 89.80 90.91 K intron_retention CycD,I_chrX_15803256_15803313 chrX - chrX_15801833_15801891 chrX_15801832_15801833;chrX_15801891_15801892 chrX_15801764_15801832;chrX_15801892_15801960 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention WDR79 chr2L - chr2L_6126596_6126654 chr2L_6126595_6126596;chr2L_6126654_6126655 chr2L_6125873_6126595;chr2L_6126655_6126843 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 1.54 0.00 3.51 1.75 1.69 0.00 0.00 0.00 8.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mib2 chr2L + chr2L_19038755_19038815 chr2L_19038754_19038755;chr2L_19038815_19038816 chr2L_19038085_19038754;chr2L_19038816_19038978 0.00 0.00 0.00 0.91 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 2.30 7.14 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 1.49 0.00 0.00 5.41 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor RpS3A,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87549_87717;chr4_87533_87717 chr4_87648_87717 chr4_87718_87817;chr4_87466_87532 74.06 73.10 67.01 67.27 89.71 66.99 88.14 NA 80.73 59.10 NA 76.97 NA 85.67 NA 71.06 NA 74.27 58.87 65.27 82.46 80.13 72.20 73.82 73.88 67.36 77.62 73.62 58.39 71.36 84.38 85.21 80.59 82.32 74.44 NA 67.39 57.80 81.91 88.00 84.25 82.43 NA 85.84 67.23 76.33 81.36 72.89 74.23 61.85 58.33 92.95 64.38 64.20 58.09 85.88 87.68 72.67 K alternative_donor RI_chrX_502548_513324,CG13366,I_chrX_508729_508806,I_chrX_509497_513324,I_chrX_509727_511407,I_chrX_509727_511477,noncoding_21186,I_chrX_509834_511407,CRE_chrX_509851_511307,I_chrX_510004_511307,I_chrX_510004_511407,I_chrX_513176_513324,I_chrX_513519_513631 chrX - chrX_509727_511477 chrX_509727_511407 chrX_509715_509726;chrX_511478_511507 85.71 NA NA NA NA NA NA NA NA NA NA 85.71 NA NA NA 87.50 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG9779,RI_chr3R_136377_136528 chr3R - chr3R_136371_136508 chr3R_136377_136508 chr3R_136509_136669;chr3R_136277_136370 99.03 98.70 98.00 98.73 98.55 100.00 98.88 100.00 98.58 100.00 100.00 100.00 97.83 97.67 100.00 100.00 97.83 100.00 98.21 99.29 100.00 97.70 98.31 100.00 100.00 98.31 98.51 95.65 100.00 98.18 100.00 97.78 100.00 97.40 96.77 100.00 98.58 98.90 98.68 97.22 100.00 99.03 97.83 100.00 100.00 100.00 98.90 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 97.89 99.20 98.04 K jcn_only_AA CG32549,I_chrX_18286136_18286367,I_chrX_18286289_18286367,RI_chrX_18301919_18303082 chrX - chrX_18286289_18286367;chrX_18286194_18286367 chrX_18286136_18286367 chrX_18286368_18286467;chrX_18286073_18286135 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.35 0.00 0.60 0.00 0.44 0.00 0.66 0.00 0.28 0.00 0.00 0.57 0.60 0.00 0.00 0.75 0.00 0.46 0.61 3.21 2.63 0.49 0.38 0.00 0.00 0.31 0.39 0.69 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 1.07 0.54 1.67 0.00 0.52 0.96 0.00 0.00 K cassette AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9003790_9005114 chrX_9003790_9004854;chrX_9005039_9005114 chrX_9004855_9005038 chrX_9003721_9003789;chrX_9005115_9005176 100.00 100.00 100.00 90.91 100.00 95.24 95.24 96.67 97.87 93.33 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 96.97 100.00 100.00 100.00 92.86 100.00 100.00 96.55 93.75 100.00 96.77 96.15 100.00 100.00 100.00 97.56 95.24 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 92.86 100.00 95.83 100.00 95.65 100.00 100.00 100.00 95.83 100.00 100.00 100.00 K alternative_acceptor CG18604,I_chr2R_14589693_14590032 chr2R + chr2R_14589693_14590032 chr2R_14589693_14590023 chr2R_14589593_14589692;chr2R_14590033_14590132 75.00 73.33 81.82 63.64 87.50 63.64 NA 73.33 70.97 80.00 NA 77.78 87.50 60.00 75.00 90.00 75.00 84.62 NA 80.77 60.00 71.88 81.82 69.57 91.67 NA 77.78 53.33 88.89 70.59 87.50 NA 92.86 85.71 75.00 81.82 63.33 86.67 68.00 64.71 NA 87.50 NA 71.43 66.67 92.31 69.23 80.00 89.47 75.00 81.82 NA 70.59 60.00 61.54 72.73 66.67 NA K alternative_acceptor GstD10,RI_chr3R_8191329_8191412,I_chr3R_8192634_8193249 chr3R - chr3R_8191305_8191412 chr3R_8191329_8191412 chr3R_8191413_8191512;chr3R_8191229_8191304 6.67 NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor twe,I_chr2L_16267018_16267422 chr2L - chr2L_16261506_16261616 chr2L_16261506_16261590 chr2L_16259416_16261505;chr2L_16261617_16261877 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention cnn,I_chr2R_9331192_9331257,I_chr2R_9333096_9336812,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9327834_9327896 chr2R_9327833_9327834;chr2R_9327896_9327897 chr2R_9327766_9327833;chr2R_9327897_9330021 0.00 0.00 0.00 2.86 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N cassette ena chr2R + chr2R_15029860_15046238 chr2R_15029860_15039409;chr2R_15039533_15046238 chr2R_15039410_15039532 chr2R_15029730_15029859;chr2R_15046239_15046560 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 79.49 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Tre1,I_chrX_5568743_5568799,I_chrX_5569518_5570588 chrX - chrX_5568743_5568803 chrX_5568742_5568743;chrX_5568803_5568804 chrX_5568643_5568742;chrX_5568804_5568899 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.45 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 K alternative_acceptor gd,I_chrX_11881464_11881506 chrX - chrX_11881455_11881506 chrX_11881464_11881506 chrX_11881507_11881606;chrX_11881364_11881454 4.25 NA NA NA NA NA 0.00 NA 6.67 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA 5.26 NA 3.23 NA 6.67 NA 5.88 5.26 7.69 NA 0.00 0.00 NA 5.56 NA NA 0.00 NA NA 0.00 NA NA 5.88 7.14 NA NA NA NA NA 5.88 K intron_retention CG34123,RI_chr2R_11160894_11162043,I_chr2R_11167854_11168411 chr2R - chr2R_11152866_11153135 chr2R_11152865_11152866;chr2R_11153135_11153136 chr2R_11152728_11152865;chr2R_11153136_11153342 9.68 7.41 0.00 3.39 4.17 3.85 6.90 11.76 8.47 NA 11.76 11.11 NA 28.57 12.12 9.68 0.00 0.00 23.08 6.82 9.52 19.05 6.90 22.73 NA 0.00 12.50 NA 5.56 7.14 6.67 18.18 12.50 20.59 10.53 6.06 10.71 20.00 10.00 20.00 NA 6.98 17.65 10.71 0.00 13.64 8.33 2.94 14.29 17.65 15.38 0.00 0.00 NA 10.71 5.88 10.34 0.00 K intron_retention CG2225 chr2L - chr2L_21668237_21668292 chr2L_21668236_21668237;chr2L_21668292_21668293 chr2L_21668106_21668236;chr2L_21668293_21669233 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA 1.59 0.00 0.00 0.00 0.00 0.00 NA 0.00 9.09 8.33 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG2246,I_chr3R_26421344_26425985,I_chr3R_26421349_26427017 chr3R - chr3R_26419539_26419834 chr3R_26419572_26419834 chr3R_26419835_26419891;chr3R_26419427_26419538 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention dNAT1,CG13319,RI_chr2R_8812301_8816468 chr2R + chr2R_8808365_8808489 chr2R_8808364_8808365;chr2R_8808489_8808490 chr2R_8805500_8808364;chr2R_8808490_8810315 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.80 0.00 0.32 0.00 0.00 0.60 0.85 0.00 0.00 0.40 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention mmd chrX - chrX_15848478_15856018 chrX_15848477_15848478;chrX_15856018_15856019 chrX_15848319_15848477;chrX_15856019_15856024 100.00 NA NA NA 100.00 100.00 100.00 NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 64.71 NA NA NA NA NA NA NA NA NA K alternative_acceptor Pof chr2R + chr2R_20556998_20557050;chr2R_20556998_20557046 chr2R_20556998_20557144 chr2R_20556952_20556997;chr2R_20557145_20557370 0.00 0.00 16.67 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA 0.00 NA 9.09 0.00 NA 0.00 11.11 NA NA NA NA NA NA NA NA NA 11.11 NA NA 8.33 0.00 0.00 NA NA 0.00 NA NA NA 0.00 16.67 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.00 NA 0.00 K jcn_only_AA CG9104,CG9099 chrX - chrX_16777969_16778096 chrX_16778035_16778096 chrX_16778097_16778358;chrX_16777528_16777968 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.39 98.88 100.00 95.83 98.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.13 97.56 100.00 98.11 100.00 100.00 97.83 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 92.73 98.78 98.39 98.57 98.97 97.96 100.00 100.00 100.00 98.21 96.10 100.00 100.00 97.18 100.00 100.00 95.24 97.78 98.04 98.31 100.00 100.00 100.00 K intron_retention iPLA2-VIA chr3L - chr3L_9856363_9856420 chr3L_9856362_9856363;chr3L_9856420_9856421 chr3L_9856063_9856362;chr3L_9856421_9856716 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17333,CG2202 chrX + chrX_10745007_10745093 chrX_10745006_10745007;chrX_10745093_10745094 chrX_10744067_10745006;chrX_10745094_10745674 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.52 6.67 2.78 0.00 0.00 0.00 0.00 6.56 8.33 2.70 0.00 0.00 3.85 2.63 0.00 4.76 7.14 0.00 0.00 1.43 3.51 4.76 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.00 0.00 0.00 4.17 0.00 0.00 K alternative_last_exon app,RI_chr3L_12201038_12201989,I_chr3L_12259361_12259754 chr3L - chr3L_12201038_12206192 chr3L_12205868_12206192 chr3L_12199329_12201037 chr3L_12204371_12205867 chr3L_12206193_12206397 85.71 90.00 88.89 77.78 77.78 83.33 83.33 87.50 94.44 85.71 87.50 93.33 62.50 83.33 88.89 77.78 87.50 83.33 80.00 92.86 85.71 93.33 94.12 92.31 88.89 87.50 91.67 92.31 80.00 90.91 85.71 83.33 92.31 91.67 85.71 92.31 94.74 81.25 94.44 80.00 85.71 93.75 83.33 83.33 75.00 81.82 77.78 84.62 93.33 83.33 92.31 77.78 63.64 75.00 87.50 77.78 87.50 80.00 K jcn_only_AD Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046104;chr3L_16045316_16046104;chr3L_16045275_16046104 chr3L_16045277_16046104 chr3L_16046105_16046204;chr3L_16045216_16045250 2.27 2.27 1.85 1.98 13.16 1.54 3.75 2.80 2.50 0.00 0.00 1.83 3.17 0.00 2.99 3.37 5.26 2.63 2.41 2.63 0.00 0.00 2.74 4.35 0.00 1.28 1.69 0.00 3.12 4.05 4.05 0.00 1.22 1.59 2.17 0.00 2.38 0.00 0.00 0.00 4.76 3.33 0.00 3.51 2.56 0.00 0.00 2.63 1.82 0.00 3.85 3.70 4.00 NA 4.88 2.78 NA 0.00 K intron_retention Vps13,I_chr2R_3464510_3464571 chr2R + chr2R_3454389_3454650 chr2R_3454388_3454389;chr2R_3454650_3454651 chr2R_3454371_3454388;chr2R_3454651_3454869 7.55 18.75 14.29 10.53 NA NA 13.04 8.33 7.41 NA NA 8.33 NA NA 0.00 0.00 NA 0.00 0.00 7.69 13.33 9.09 5.56 NA NA 18.75 NA NA 6.25 0.00 16.67 NA 15.79 8.33 NA NA 9.68 NA NA 0.00 NA 0.00 NA 7.41 NA NA NA 5.00 5.71 NA NA NA NA NA 0.00 NA NA NA K intron_retention CAP-D2,E_chr3R_25501928_25504637 chr3R + chr3R_25501579_25501655 chr3R_25501578_25501579;chr3R_25501655_25501656 chr3R_25501398_25501578;chr3R_25501656_25502127 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 12.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 3.45 NA NA NA 0.00 NA NA NA K alternative_acceptor rl,I_chr2RHet_199154_207044,RI_chr2RHet_203476_203577,RI_chr2RHet_203592_207044,I_chr2RHet_232696_247338,RI_chr2RHet_240197_247338 chr2RHet + chr2RHet_198817_198973;chr2RHet_198817_198981 chr2RHet_198817_198964 chr2RHet_198804_198816;chr2RHet_198982_199153 57.14 NA 66.67 65.62 60.00 44.44 50.00 61.11 78.57 NA NA 50.00 60.00 69.23 NA 67.74 57.14 66.67 70.59 65.22 50.00 NA 71.43 50.00 57.14 71.43 60.00 NA NA 44.44 45.45 NA NA 48.28 80.00 57.14 44.44 NA 54.55 NA NA 62.50 NA NA NA 55.56 44.44 NA 51.72 57.14 71.43 66.67 NA NA 55.56 NA NA 57.14 K alternative_acceptor CG5261,I_chr2L_7428611_7428877 chr2L + chr2L_7428680_7428877;chr2L_7428680_7428925 chr2L_7428680_7428778 chr2L_7428612_7428679;chr2L_7428926_7428977 0.99 0.00 0.00 1.25 0.00 0.00 0.00 1.28 0.78 2.08 0.00 1.01 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.59 0.00 4.82 2.27 0.00 2.13 0.00 1.54 1.64 1.47 1.35 4.76 2.86 1.43 1.32 2.17 0.00 0.93 1.28 0.99 2.11 0.00 0.79 2.78 2.70 0.00 0.00 1.01 1.79 0.00 1.96 0.00 2.86 0.00 1.79 0.00 0.00 1.10 1.67 K intron_retention CG5514,E_chr3R_23764745_23767416,Gp93 chr3R + chr3R_23764641_23764698 chr3R_23764640_23764641;chr3R_23764698_23764699 chr3R_23764270_23764640;chr3R_23764699_23764744 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 NA NA 1.79 0.00 0.00 0.00 2.38 0.00 0.00 0.00 3.30 0.00 2.78 2.27 0.00 0.00 0.00 4.55 0.00 0.00 3.23 0.00 6.90 4.40 0.00 0.00 6.06 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 2.86 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 K jcn_only_AA Bsg25D chr2L - chr2L_5273555_5274018 chr2L_5273591_5274018 chr2L_5274019_5275763;chr2L_5273161_5273554 88.82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.83 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 81.82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD MED14,CG12030 chr3L + chr3L_594846_594915 chr3L_594852_594915 chr3L_594916_595283;chr3L_594354_594845 0.00 3.70 0.00 3.23 2.08 0.00 0.00 1.23 1.69 0.00 2.38 1.12 0.00 2.86 8.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 7.14 0.00 0.00 2.13 0.00 1.92 0.00 0.00 4.11 1.56 9.80 0.00 0.00 3.77 3.85 2.50 0.00 0.93 1.96 0.00 0.00 3.03 3.23 0.00 3.80 2.08 0.00 0.00 NA NA 0.00 0.00 0.00 3.03 K cassette CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789616_9789790 chr2L_9789616_9789674;chr2L_9789740_9789790 chr2L_9789675_9789739 chr2L_9789594_9789615;chr2L_9789791_9789832 24.05 22.87 24.09 39.84 22.78 20.48 20.84 26.23 22.69 29.20 19.44 20.18 31.20 25.93 23.08 18.63 26.86 25.27 26.70 19.67 17.65 34.42 10.70 32.11 30.86 12.79 28.64 29.55 13.01 16.42 23.95 20.41 20.45 24.05 21.79 7.72 27.75 27.92 29.77 25.82 18.57 21.35 27.50 26.53 17.20 21.65 30.43 18.87 20.26 28.45 28.70 27.82 17.05 27.34 25.49 24.81 24.79 15.97 N intron_retention CG15706 chr2R - chr2R_12112831_12114161 chr2R_12112830_12112831;chr2R_12114161_12114162 chr2R_12112612_12112830;chr2R_12114162_12114241 100.00 100.00 100.00 100.00 NA 100.00 100.00 47.62 52.00 NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 65.38 100.00 100.00 100.00 NA NA 100.00 55.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA NA 100.00 NA 100.00 NA 62.50 NA 100.00 NA 100.00 NA 100.00 NA K intron_retention exba,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1425890_1426009 chr3R_1425889_1425890;chr3R_1426009_1426010 chr3R_1425790_1425889;chr3R_1426010_1426024 88.24 85.71 87.50 76.47 92.31 90.00 95.24 81.40 83.33 88.89 80.95 97.62 94.44 88.24 77.78 75.47 95.45 86.96 90.91 86.54 90.00 100.00 81.08 92.00 92.31 93.75 88.24 94.44 92.31 76.47 88.89 94.74 100.00 97.37 80.95 86.67 90.48 84.62 93.75 90.00 94.44 88.57 73.91 76.67 94.44 80.65 78.95 96.30 79.17 83.33 81.48 80.77 78.95 85.71 88.89 77.78 87.50 81.82 K cassette CG14619,RI_chrX_21860097_21868647,I_chrX_21865109_21865522,I_chrX_21869837_21869915 chrX + chrX_21860097_21868647 chrX_21860097_21867984;chrX_21868212_21868647 chrX_21867985_21868211 chrX_21859997_21860096;chrX_21868648_21868747 97.83 98.72 97.33 98.86 95.16 98.39 98.88 96.74 95.76 100.00 100.00 99.29 93.33 98.00 98.63 97.06 95.74 98.28 98.15 97.48 98.08 97.27 96.77 96.91 97.30 97.96 96.43 93.44 85.45 96.25 92.96 97.22 98.57 98.02 97.14 98.63 99.38 97.83 99.29 96.40 97.30 96.43 100.00 97.67 98.11 98.55 95.00 98.33 97.46 98.21 99.12 96.36 98.15 98.18 97.10 95.31 98.21 100.00 N cassette brat,I_chr2L_19134277_19143634,EI_chr2L_19145845_19145958,RI_chr2L_19145845_19146761 chr2L + chr2L_19134277_19166084 chr2L_19134277_19145793;chr2L_19145845_19166084 chr2L_19145794_19145844 chr2L_19134177_19134276;chr2L_19166085_19166125 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 68.42 NA NA 100.00 100.00 100.00 100.00 58.82 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K jcn_only_AA F_chr3RHet_1879085_1900358,Alg-2 chr3RHet - chr3RHet_1898928_1898983;chr3RHet_1898895_1898983;chr3RHet_1898919_1898983 chr3RHet_1898930_1898983 chr3RHet_1898984_1899090;chr3RHet_1898558_1898894 96.07 96.05 92.65 96.35 98.36 96.94 97.80 95.15 95.60 100.00 97.30 94.44 94.70 95.68 94.35 95.56 96.04 96.91 96.10 97.67 96.20 96.15 93.51 89.36 93.15 92.92 100.00 90.48 92.54 97.62 94.17 100.00 NA 94.66 94.74 96.30 90.57 95.45 97.80 96.51 91.11 97.07 97.75 95.45 83.72 97.70 97.67 96.77 94.16 95.60 97.50 92.22 96.83 98.21 94.48 98.23 96.95 97.22 K intron_retention zip,I_chr2R_20878796_20879147 chr2R - chr2R_20879222_20879332 chr2R_20879221_20879222;chr2R_20879332_20879333 chr2R_20879148_20879221;chr2R_20879333_20879496 68.34 NA NA NA NA NA 58.33 77.78 90.00 NA NA 66.67 NA NA NA NA NA NA NA NA NA 23.81 NA NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA 53.85 NA NA NA NA NA NA NA NA 70.00 NA NA NA NA NA NA NA NA NA K multi_cassette Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CE_chr2R_11826384_11826741,I_chr2R_11826763_11826990,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824089_11827414 chr2R_11824089_11825183;chr2R_11825385_11825951;chr2R_11826484_11826541;chr2R_11826763_11827414 chr2R_11825184_11825384;chr2R_11825952_11826483;chr2R_11826542_11826762 chr2R_11823989_11824088;chr2R_11827415_11827523 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG9795,EI_chr3R_145575_147566,RI_chr3R_145613_145675 chr3R + chr3R_145613_145675 chr3R_145612_145613;chr3R_145675_145676 chr3R_145513_145612;chr3R_145676_145775 94.74 91.30 97.67 97.62 86.67 93.02 93.06 89.13 94.74 100.00 94.74 94.29 87.04 95.12 94.03 97.78 95.24 92.68 89.58 92.05 98.61 94.12 97.92 92.86 96.43 97.83 92.31 96.97 97.78 92.86 92.16 100.00 96.30 89.86 94.12 96.00 97.22 94.87 96.30 89.23 100.00 95.35 88.37 88.46 87.76 94.23 96.08 95.65 86.96 91.49 95.45 97.22 97.14 95.24 93.75 95.74 96.39 93.75 K jcn_only_AD CG8839,I_chr2R_8229288_8229488,I_chr2R_8229288_8231538 chr2R - chr2R_8229288_8231968;chr2R_8229288_8232025;chr2R_8229288_8231966 chr2R_8229288_8231964 chr2R_8229188_8229287;chr2R_8232026_8232112 19.51 20.79 17.67 19.04 17.97 17.22 23.91 16.81 22.49 31.46 18.23 13.26 22.40 17.68 17.80 20.42 19.50 21.82 16.92 20.69 19.05 16.33 22.64 16.95 20.00 16.39 19.51 22.22 20.61 23.46 14.08 19.33 21.88 17.34 25.49 22.50 26.15 20.25 19.72 11.76 26.13 17.75 16.08 30.77 18.67 18.75 27.27 26.21 17.86 17.91 23.85 20.00 24.51 25.93 14.65 16.30 18.80 28.43 K jcn_only_AD RpL28,RI_chr3L_3221710_3221877,I_chr3L_3221982_3222744,snoRNA:Or-CD11c,snoRNA:Or-CD11b chr3L - chr3L_3221982_3222787;chr3L_3221982_3222152;chr3L_3221982_3222574;chr3L_3221982_3222926;chr3L_3221982_3222847 chr3L_3221982_3222365 chr3L_3221882_3221981;chr3L_3222927_3222958 10.20 15.20 6.05 2.73 6.92 5.54 27.03 3.52 15.05 12.03 7.06 13.18 16.91 20.10 4.10 18.50 5.81 4.86 2.11 5.69 7.14 10.66 15.97 22.70 33.33 17.41 33.88 34.23 4.32 7.25 4.09 2.74 0.45 3.93 10.96 14.84 14.52 17.82 13.49 10.20 5.58 4.45 4.39 13.16 2.09 3.91 18.18 2.43 5.25 18.75 13.01 27.68 4.10 11.93 4.75 20.69 26.09 1.26 N jcn_only_AA Gprk2 chr3R + chr3R_27259611_27279032 chr3R_27259611_27259861 chr3R_27259181_27259610;chr3R_27279033_27279128 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 31.48 NA 0.00 13.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.51 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 25.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 31.17 NA 0.00 NA 0.00 0.00 0.00 26.32 NA 26.47 NA 0.00 NA 35.00 NA 0.00 0.00 N alternative_acceptor Cct5 chr2R + chr2R_8064224_8064282 chr2R_8064224_8064264 chr2R_8063242_8064223;chr2R_8064283_8065030 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 1.04 0.24 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8446 chr2R + chr2R_12085844_12085989 chr2R_12085843_12085844;chr2R_12085989_12085990 chr2R_12084512_12085843;chr2R_12085990_12086451 0.84 0.99 0.00 1.26 0.00 0.00 0.66 1.85 1.55 0.00 0.00 2.38 2.91 1.01 0.85 0.00 0.00 0.00 0.98 1.01 0.00 5.47 1.64 0.84 0.00 0.79 4.58 1.61 3.42 0.00 1.63 0.00 1.16 0.00 2.04 2.11 1.22 0.00 2.60 1.52 0.62 1.05 0.00 0.70 0.00 0.00 1.54 1.52 2.35 0.75 0.00 0.00 0.00 0.91 0.00 0.00 0.00 1.17 K intron_retention Jhebp29,RI_chr2R_20857941_20857992,RI_chr2R_20857941_20858127 chr2R + chr2R_20857941_20858182 chr2R_20857940_20857941;chr2R_20858182_20858183 chr2R_20857841_20857940;chr2R_20858183_20858227 97.62 96.72 98.68 99.03 97.96 95.71 98.95 99.06 100.00 96.97 98.15 96.69 98.21 95.00 96.51 97.87 97.96 93.55 97.22 95.77 98.44 65.71 97.22 97.62 97.56 98.73 97.53 97.62 97.83 97.56 100.00 96.15 74.39 99.02 97.37 97.87 98.39 100.00 100.00 94.57 93.24 99.24 96.15 100.00 93.85 92.31 98.90 100.00 96.04 98.46 98.70 97.62 96.83 94.05 100.00 95.00 97.58 96.00 K intron_retention Cctgamma chr3R + chr3R_12473420_12473557 chr3R_12473419_12473420;chr3R_12473557_12473558 chr3R_12473322_12473419;chr3R_12473558_12473651 5.00 3.23 7.89 5.69 5.56 8.51 5.13 8.33 4.93 0.00 2.82 3.70 0.00 4.00 7.89 2.80 3.85 4.76 5.63 6.60 0.00 1.97 3.51 1.10 10.42 7.55 2.11 5.48 20.00 3.12 7.23 10.87 5.00 6.54 2.13 9.52 1.92 2.50 2.63 8.33 23.08 8.70 3.28 3.33 8.51 5.26 6.25 8.11 3.94 5.95 4.12 3.12 2.13 8.33 6.38 2.53 4.76 13.04 K jcn_only_AD RhoGDI chr3L + chr3L_19922009_19923914;chr3L_19921911_19923914 chr3L_19921875_19923914 chr3L_19923915_19924114;chr3L_19921868_19921874 0.00 0.61 0.00 0.94 0.00 1.37 0.00 1.27 0.69 0.00 0.56 0.28 0.84 0.00 0.41 0.93 0.70 0.72 1.13 0.29 0.00 0.59 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.93 1.30 4.55 1.63 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 2.38 0.00 0.72 1.10 0.00 0.00 0.00 0.00 0.85 0.00 1.46 0.00 0.00 0.00 K intron_retention CG13074 chr3L - chr3L_16089356_16089415 chr3L_16089355_16089356;chr3L_16089415_16089416 chr3L_16089162_16089355;chr3L_16089416_16089692 4.35 3.17 7.94 6.67 7.14 2.38 4.35 6.06 7.48 5.26 0.00 2.78 0.00 4.17 4.84 10.00 6.00 7.69 8.22 3.92 2.00 5.06 1.37 4.11 5.71 0.00 14.52 13.04 5.13 2.90 3.64 2.56 8.96 2.11 4.35 0.00 3.90 2.86 2.22 3.57 7.50 7.21 0.00 3.57 5.56 6.25 4.11 6.06 5.26 5.32 2.35 7.84 2.27 0.00 3.17 2.60 4.88 4.44 K intron_retention CG12079,CG14964 chr3L - chr3L_3159349_3159408 chr3L_3159348_3159349;chr3L_3159408_3159409 chr3L_3159274_3159348;chr3L_3159409_3159555 2.84 0.00 1.64 3.37 2.86 2.25 4.49 5.56 1.39 2.20 3.03 1.42 0.00 1.27 3.15 1.00 1.61 3.26 0.00 2.35 4.49 2.10 3.02 1.00 4.46 8.45 7.95 15.38 11.01 1.61 8.70 2.80 1.57 3.20 4.55 4.24 0.90 2.07 0.81 1.66 6.58 2.13 4.76 3.23 2.90 3.05 2.19 5.22 1.96 3.49 1.59 3.45 1.35 2.41 3.60 2.96 0.00 2.84 K alternative_donor Dp,I_chr2R_9111166_9112971,REI_chr2R_9113257_9113316 chr2R + chr2R_9112640_9112971;chr2R_9112646_9112971 chr2R_9112663_9112971 chr2R_9112972_9113071;chr2R_9112620_9112639 60.00 75.00 50.00 53.33 NA 50.00 NA NA 61.11 NA NA 55.56 NA NA 57.14 75.00 NA 55.56 NA 64.29 NA 89.47 50.00 52.94 75.00 56.25 70.59 70.00 NA 62.50 69.23 NA NA 80.00 NA NA 62.50 NA 57.89 61.54 57.14 57.14 NA 60.00 NA 75.00 66.67 NA 42.86 54.55 NA NA NA 50.00 NA NA 46.67 66.67 K intron_retention F_chr2L_5045484_5046146,CG14040,His3_3A chr2L + chr2L_5053169_5053238 chr2L_5053168_5053169;chr2L_5053238_5053239 chr2L_5052846_5053168;chr2L_5053239_5053356 0.00 0.00 0.00 0.00 3.85 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 2.70 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 N intron_retention cryptocephal,noncoding_4181,I_chr2L_21312209_21314626 chr2L + chr2L_21311018_21311192 chr2L_21311017_21311018;chr2L_21311192_21311193 chr2L_21310948_21311017;chr2L_21311193_21311214 52.13 52.13 53.38 55.56 64.29 48.18 47.71 49.66 54.17 60.47 46.74 48.79 50.00 53.54 43.21 56.03 61.43 42.54 48.31 37.84 43.12 67.31 60.34 50.62 51.28 49.40 64.71 79.73 78.09 65.22 48.39 65.67 65.81 47.19 51.81 60.68 67.82 50.00 54.78 69.07 66.67 51.02 58.82 57.76 44.38 58.33 50.76 75.81 44.93 58.04 47.40 47.47 41.30 41.35 49.28 57.26 44.63 67.24 K jcn_only_AA ced-6,I_chr2R_5324717_5324924,I_chr2R_5328640_5328696 chr2R - chr2R_5324304_5324924 chr2R_5324717_5324924 chr2R_5324925_5325024;chr2R_5323867_5324303 0.16 0.19 0.61 0.62 0.59 0.57 0.41 0.00 0.00 0.00 0.28 0.09 0.00 0.22 0.14 0.17 0.00 0.00 0.00 0.08 0.00 0.00 0.39 0.00 0.70 0.00 0.18 0.00 0.21 0.19 0.20 0.00 0.15 0.12 0.41 0.47 0.16 0.19 0.12 0.12 1.18 0.08 0.26 0.21 0.17 0.16 0.00 0.14 0.00 0.00 0.27 0.28 0.00 0.00 0.00 0.41 0.20 0.17 K intron_retention SCAR chr2L + chr2L_10976969_10977897 chr2L_10976968_10976969;chr2L_10977897_10977898 chr2L_10976793_10976968;chr2L_10977898_10978706 0.00 0.00 0.00 0.00 0.00 1.89 2.67 0.00 1.82 0.00 0.00 0.00 0.00 3.33 2.86 0.00 0.00 0.00 0.00 2.50 0.00 6.74 1.80 1.00 1.20 0.00 2.91 1.43 3.57 0.00 0.00 0.00 1.69 2.27 0.00 1.67 0.00 3.12 0.00 1.36 0.00 1.15 0.00 2.67 0.00 0.00 0.00 2.38 1.83 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N multi_cassette bwa,I_chr2L_20069515_20073377,I_chr2L_20073310_20073377 chr2L + chr2L_20066899_20072353 chr2L_20066899_20069052;chr2L_20069305_20069376;chr2L_20069515_20072353 chr2L_20069053_20069304;chr2L_20069377_20069514 chr2L_20066389_20066898;chr2L_20072354_20072646 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention hang,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16328906_16329177 chrX_16328905_16328906;chrX_16329177_16329178 chrX_16328294_16328905;chrX_16329178_16329187 5.79 6.00 1.90 5.79 1.98 3.00 6.04 8.93 5.84 6.31 5.26 6.32 8.40 7.14 5.93 5.69 8.05 6.87 3.70 3.82 1.96 6.80 8.28 7.34 4.71 4.72 6.60 12.31 2.48 4.61 4.17 4.46 3.09 5.11 7.92 3.23 7.74 3.96 5.85 4.98 0.00 5.86 5.49 5.36 4.35 5.92 8.82 2.31 7.02 4.23 6.67 6.67 6.98 5.00 7.02 5.19 9.26 3.47 K cassette CG33558,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,I_chr2R_2820149_2820628,EI_chr2R_2820947_2821570,CREI_chr2R_2832933_2850384 chr2R - chr2R_2817876_2820628 chr2R_2817876_2818567;chr2R_2820203_2820628 chr2R_2818568_2820202 chr2R_2817851_2817875;chr2R_2820629_2820728 64.71 53.85 78.57 93.33 54.55 38.89 46.15 57.89 64.71 58.82 72.73 75.00 66.67 91.67 70.59 85.71 84.62 63.64 66.67 83.33 75.00 37.84 49.09 61.29 54.17 71.43 54.17 60.00 83.33 73.81 76.47 65.00 79.41 62.50 51.85 85.00 69.23 48.15 63.64 69.39 57.14 58.33 80.00 67.86 59.38 60.98 44.00 72.09 70.37 32.14 48.15 69.23 54.17 42.86 63.16 65.38 62.50 76.67 K intron_retention CG18659,E_chr2R_5011363_5019110,RI_chr2R_5013572_5014531,I_chr2R_5016147_5016997 chr2R - chr2R_5011651_5012248 chr2R_5011650_5011651;chr2R_5012248_5012249 chr2R_5011194_5011650;chr2R_5012249_5012725 18.31 20.27 17.86 19.72 17.31 17.54 29.51 16.90 19.83 35.48 23.08 16.50 26.47 17.78 19.05 11.76 19.05 21.43 15.56 13.19 16.33 22.89 23.36 19.27 37.66 17.50 17.27 46.38 24.66 16.67 15.00 16.18 16.10 20.24 22.86 17.91 19.38 16.67 18.55 22.31 27.14 18.69 13.16 16.88 11.61 19.10 18.68 18.31 13.92 16.25 23.26 21.05 17.31 15.05 15.62 24.29 12.79 9.23 K jcn_only_AA APC4,I_chrX_8978433_8978480,RI_chrX_8980352_8980400 chrX + chrX_8978433_8978501 chrX_8978433_8978480 chrX_8978333_8978432;chrX_8978502_8978580 10.00 NA 11.11 10.00 NA NA 20.00 5.00 0.00 NA NA 18.18 NA NA NA 9.38 NA NA NA 17.14 NA NA NA NA NA NA NA NA NA NA NA NA NA 8.00 NA NA NA NA NA 10.00 NA 5.00 NA NA NA NA NA NA 5.56 NA 20.00 NA NA NA NA NA NA NA K intron_retention LIMK1,I_chrX_12488942_12489000 chrX - chrX_12484518_12486000 chrX_12484517_12484518;chrX_12486000_12486001 chrX_12483874_12484517;chrX_12486001_12486193 59.55 NA 71.43 45.83 60.00 45.45 64.71 59.09 54.05 87.50 42.86 60.87 55.56 50.00 64.29 65.00 54.55 58.82 57.14 57.58 63.64 75.86 63.16 50.00 NA NA 72.73 77.78 53.57 54.55 47.06 77.78 56.52 68.18 47.06 55.00 83.33 90.00 41.67 63.64 78.57 48.15 63.64 72.73 NA 75.00 NA 66.00 52.63 NA 43.75 NA NA NA 58.82 NA NA 73.68 K intron_retention Crk,RI_chr4_231302_233315,I_chr4_231307_232253 chr4 + chr4_230989_231063 chr4_230988_230989;chr4_231063_231064 chr4_230979_230988;chr4_231064_231112 95.83 93.75 85.00 100.00 NA 100.00 97.62 97.22 98.00 NA 100.00 96.00 100.00 95.45 93.75 90.91 94.12 100.00 95.83 97.30 90.00 100.00 93.75 100.00 100.00 92.31 100.00 88.89 NA 72.73 100.00 100.00 NA 97.14 100.00 NA 84.62 100.00 NA 90.00 NA 87.88 92.31 94.12 100.00 100.00 92.86 91.67 89.74 100.00 92.86 91.67 NA 88.89 100.00 91.67 93.75 100.00 K intron_retention msn,RI_chr3L_2557071_2557135,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2557077_2557135 chr3L_2557076_2557077;chr3L_2557135_2557136 chr3L_2556942_2557076;chr3L_2557136_2557235 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD sd,noncoding_23930,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15706472_15707633;chrX_15706564_15707633 chrX_15706568_15707633 chrX_15707634_15707635;chrX_15706468_15706471 11.28 NA NA NA NA NA NA NA 13.04 NA NA NA NA NA NA NA NA NA NA 9.52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD wdb,I_chr3R_23394314_23406731,I_chr3R_23394314_23406794,I_chr3R_23394314_23407159,RI_chr3R_23394314_23407186,I_chr3R_23394314_23407412,I_chr3R_23394314_23407715,I_chr3R_23394314_23407721,RI_chr3R_23406048_23406731,RI_chr3R_23406048_23406794,I_chr3R_23406048_23406928,RI_chr3R_23406048_23407402 chr3R - chr3R_23406048_23406928;chr3R_23406048_23407402;chr3R_23406048_23407723 chr3R_23406048_23406865 chr3R_23405948_23406047;chr3R_23407724_23407815 4.76 NA 3.85 0.00 NA NA 16.67 6.06 5.88 NA NA 6.98 NA 15.38 0.00 20.83 4.55 NA NA 3.70 NA 10.14 4.76 0.00 3.70 0.00 3.45 NA 0.00 5.00 4.35 10.00 NA 7.14 14.29 5.41 3.12 0.00 NA 4.65 0.00 13.04 NA 4.55 4.76 NA 20.00 3.33 11.63 0.00 4.88 NA NA NA 8.00 NA NA NA K cassette CG17471,RI_chr4_1213397_1214333,RI_chr4_1213397_1216053,RI_chr4_1214248_1214333,I_chr4_1214293_1214333,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1213397_1214333 chr4_1213397_1214185;chr4_1214248_1214333 chr4_1214186_1214247 chr4_1213332_1213396;chr4_1214334_1214402 82.35 80.95 85.00 64.71 100.00 90.48 77.42 78.38 81.25 NA 87.50 81.48 100.00 88.24 90.91 87.80 75.00 66.67 81.82 77.78 88.89 90.00 100.00 92.31 NA 77.78 82.35 NA NA 60.00 74.29 79.17 80.95 82.93 85.00 76.92 90.00 66.67 80.00 81.82 80.00 87.50 93.75 80.77 88.89 82.93 95.65 75.00 89.36 92.00 95.45 80.00 83.33 76.47 83.33 94.12 68.00 70.27 K jcn_only_AD Gli chr2L - chr2L_15760575_15762688 chr2L_15760575_15762568 chr2L_15760402_15760574;chr2L_15762689_15762723 50.00 NA NA NA NA NA NA NA 50.00 40.00 NA NA NA NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA 33.33 NA NA NA 38.71 50.00 NA NA NA NA NA 62.50 42.31 56.67 NA 45.45 NA 70.00 NA 50.88 51.43 NA NA NA NA NA NA NA NA NA K intron_retention Cctgamma chr3R + chr3R_12474357_12474422 chr3R_12474356_12474357;chr3R_12474422_12474423 chr3R_12473857_12474356;chr3R_12474423_12475700 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.19 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Hcf,I_chr4_384272_384649,I_chr4_391984_392875 chr4 + chr4_384266_384493 chr4_384272_384493 chr4_384494_384649;chr4_384172_384265 21.15 20.69 20.37 15.94 17.65 18.18 19.72 22.97 21.90 27.78 13.33 20.34 18.42 21.05 10.87 21.15 23.53 19.57 18.00 19.74 21.21 28.57 25.00 15.38 28.57 24.44 22.73 41.18 23.81 33.33 16.22 14.29 23.53 20.90 36.84 25.00 18.92 21.74 24.32 20.83 NA 21.95 10.71 12.20 35.71 29.41 20.00 25.00 17.65 21.05 26.67 16.67 25.00 NA 17.86 37.50 28.57 27.27 K alternative_donor CG1074,I_chr3R_261173_261244,RI_chr3R_265878_265942 chr3R + chr3R_259882_260376 chr3R_259909_260376 chr3R_260377_261172;chr3R_259736_259881 100.00 100.00 100.00 100.00 NA 90.91 100.00 94.74 100.00 100.00 100.00 100.00 100.00 90.91 100.00 95.00 NA 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 92.86 95.00 95.83 100.00 100.00 100.00 NA 100.00 100.00 96.15 100.00 95.45 100.00 100.00 100.00 100.00 90.91 100.00 96.00 100.00 95.00 100.00 100.00 100.00 92.86 88.89 100.00 97.50 K intron_retention Aldh-III,RE_chr2R_3355332_3355720,I_chr2R_3356541_3356614,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3355332_3356614 chr2R_3355331_3355332;chr2R_3356614_3356615 chr2R_3355296_3355331;chr2R_3356615_3356666 42.86 42.50 33.33 70.73 40.54 31.58 63.64 55.74 53.62 53.33 53.85 52.94 62.50 50.00 52.63 28.57 46.67 58.82 44.44 32.63 56.25 26.47 51.22 34.88 37.84 33.33 57.69 57.14 42.86 31.03 44.44 33.33 36.36 47.27 40.00 72.73 32.43 33.33 32.73 37.25 10.81 48.44 58.33 44.12 35.00 26.53 31.25 46.15 50.00 41.38 46.15 47.62 41.67 33.33 40.82 27.91 39.13 48.15 K alternative_donor eIF-5A,I_chr2R_19945430_19946454,I_chr2R_19945576_19946006,I_chr2R_19945723_19946006,I_chr2R_19945783_19946006,I_chr2R_19945852_19946006,I_chr2R_19945875_19946006,I_chr2R_19945921_19946006,I_chr2R_19946299_19946454,I_chr2R_19946657_19946733,I_chr2R_19948517_19948682 chr2R + chr2R_19945576_19946006;chr2R_19945921_19946006;chr2R_19945426_19946006;chr2R_19945430_19946006 chr2R_19945875_19946006 chr2R_19946007_19946106;chr2R_19945343_19945425 0.17 0.17 0.06 0.29 0.00 0.07 0.26 0.17 0.22 0.35 0.11 0.13 0.19 0.09 0.05 0.09 0.14 0.08 0.07 0.15 0.08 0.22 0.52 0.35 0.13 0.14 1.53 0.75 0.85 0.22 0.24 0.16 0.19 0.09 0.19 0.58 0.26 0.32 0.21 0.10 0.18 0.18 0.10 0.15 0.07 0.24 0.26 0.11 0.11 0.52 0.68 0.24 0.09 0.21 0.05 0.23 0.12 0.07 K alternative_donor beta-Spec chrX + chrX_17551983_17555021 chrX_17551995_17555021 chrX_17555022_17561265;chrX_17551926_17551982 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Dcp2,F_chr3L_15815909_15816023,F_chr3L_15817090_15817547 chr3L - chr3L_15816282_15816346 chr3L_15816281_15816282;chr3L_15816346_15816347 chr3L_15816063_15816281;chr3L_15816347_15816855 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.68 0.00 0.00 4.44 0.00 5.17 0.00 29.69 0.00 0.00 0.00 0.00 0.00 0.00 7.27 2.60 0.00 1.59 0.00 3.85 1.48 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K alternative_acceptor Kap3 chrX - chrX_11228955_11229028 chrX_11228967_11229028 chrX_11229029_11229285;chrX_11228715_11228954 97.22 100.00 93.75 100.00 90.91 100.00 95.24 95.45 90.91 100.00 100.00 100.00 90.91 100.00 92.31 100.00 100.00 92.86 100.00 97.50 90.00 96.67 97.30 96.43 92.86 92.86 96.30 96.67 100.00 96.30 100.00 100.00 100.00 95.45 100.00 100.00 96.55 100.00 97.22 100.00 91.67 100.00 92.86 96.15 100.00 100.00 95.00 92.86 96.30 100.00 96.15 100.00 93.75 95.00 100.00 95.65 100.00 100.00 K intron_retention CG7158 chr3L - chr3L_21668063_21668121 chr3L_21668062_21668063;chr3L_21668121_21668122 chr3L_21667494_21668062;chr3L_21668122_21668273 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 3.92 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 18.18 25.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 K alternative_donor scra,EI_chr2R_3480349_3480405 chr2R + chr2R_3480339_3480405 chr2R_3480349_3480405 chr2R_3480406_3480505;chr2R_3480249_3480338 0.00 0.00 0.00 0.31 0.00 0.56 0.00 0.00 0.32 0.99 0.00 0.00 0.00 0.00 0.48 0.00 0.72 0.00 0.00 0.23 0.00 0.00 0.40 0.00 0.00 0.00 0.51 1.01 0.00 0.42 1.21 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.27 0.00 0.27 0.00 0.00 0.34 0.00 0.00 0.45 0.30 0.00 0.00 0.91 0.00 0.00 0.46 0.00 0.00 0.39 K alternative_acceptor CycA,RE_chr3L_11825347_11826111 chr3L - chr3L_11825344_11825973 chr3L_11825347_11825973 chr3L_11825974_11826431;chr3L_11825247_11825343 73.77 79.25 67.86 73.33 84.44 78.18 80.00 79.45 69.23 72.92 70.83 72.22 73.47 74.42 74.07 77.59 80.56 77.42 70.69 75.63 75.56 72.09 74.68 75.00 76.47 73.58 73.77 55.17 78.95 77.78 74.55 84.85 70.93 68.89 73.33 75.00 66.67 72.73 67.92 65.91 72.50 73.96 76.19 65.62 69.81 73.08 72.22 77.22 76.19 66.67 81.54 76.74 64.71 70.27 77.78 72.73 58.62 75.00 K jcn_only_AA fbp,RI_chr2L_19763745_19764069 chr2L - chr2L_19762832_19764069;chr2L_19763498_19764069 chr2L_19763745_19764069 chr2L_19764070_19764120 15.38 NA 20.00 0.00 NA NA NA 13.89 12.73 13.79 NA 18.52 NA NA NA 28.00 NA NA 8.70 18.52 NA 12.50 NA 16.13 NA NA NA NA NA NA 24.14 NA 23.08 15.38 NA NA 14.81 NA 3.33 14.74 NA 20.69 22.73 10.00 NA 32.14 NA 24.14 18.75 0.00 10.71 NA NA 5.00 18.75 NA 9.09 44.00 K intron_retention RagC,CG30373 chr2R - chr2R_4049934_4049992 chr2R_4049933_4049934;chr2R_4049992_4049993 chr2R_4049791_4049933;chr2R_4049993_4050055 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 1.41 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 2.33 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 2.70 0.00 0.00 1.45 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 K cassette cnn,I_chr2R_9333096_9336723,I_chr2R_9333096_9336812,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9333096_9336501 chr2R_9333096_9334636;chr2R_9334834_9336501 chr2R_9334637_9334833 chr2R_9333052_9333095;chr2R_9336502_9336659 100.00 100.00 100.00 95.83 100.00 100.00 96.55 96.43 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 90.00 90.00 94.12 100.00 100.00 80.00 91.67 88.24 92.86 100.00 90.91 96.15 90.91 95.45 100.00 100.00 95.00 96.00 100.00 100.00 94.12 100.00 92.31 91.43 86.67 100.00 100.00 96.88 100.00 95.00 100.00 100.00 96.15 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette Nop60B,RI_chr2R_20063248_20063455,I_chr2R_20063248_20063949,F_chr2R_20073291_20073744 chr2R + chr2R_20063248_20063949 chr2R_20063248_20063439;chr2R_20063715_20063949 chr2R_20063440_20063714 chr2R_20063148_20063247;chr2R_20063950_20064049 100.00 100.00 100.00 99.10 100.00 100.00 99.75 99.78 99.75 100.00 99.65 100.00 100.00 100.00 99.74 100.00 100.00 99.69 99.67 99.65 100.00 99.82 99.87 99.85 100.00 100.00 100.00 100.00 100.00 100.00 99.67 100.00 99.78 100.00 100.00 99.75 100.00 99.85 99.88 100.00 99.66 100.00 99.61 99.78 99.77 100.00 100.00 99.67 99.87 99.85 100.00 99.73 99.89 100.00 100.00 100.00 100.00 99.75 K intron_retention CG3744,I_chr3R_20701248_20701968 chr3R - chr3R_20701248_20701968 chr3R_20701247_20701248;chr3R_20701968_20701969 chr3R_20701148_20701247;chr3R_20701969_20702068 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 94.44 100.00 100.00 97.83 100.00 100.00 92.86 100.00 100.00 100.00 100.00 97.56 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Src42A chr2R + chr2R_1898615_1898675 chr2R_1898614_1898615;chr2R_1898675_1898676 chr2R_1898446_1898614;chr2R_1898676_1898842 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 1.11 0.00 0.00 0.00 1.32 2.26 0.00 0.00 0.98 0.00 0.00 1.23 2.44 2.63 0.00 0.00 0.00 0.00 0.00 3.06 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Cht2,I_chr3L_1754361_1754605,I_chr3L_1754361_1754860 chr3L - chr3L_1754361_1755586 chr3L_1754360_1754361;chr3L_1755586_1755587 chr3L_1754261_1754360;chr3L_1755587_1755934 10.53 NA NA 0.00 NA NA NA NA 15.00 NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA K jcn_only_AA Updo chr2R + chr2R_5472307_5472432 chr2R_5472307_5472426 chr2R_5472269_5472306;chr2R_5472433_5473176 0.00 1.33 1.03 1.65 0.00 0.00 0.00 0.84 0.84 0.00 0.00 0.61 0.00 0.00 1.00 0.00 0.00 0.00 2.13 0.55 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.84 0.00 0.00 1.79 1.22 1.47 1.25 1.08 0.00 0.82 0.00 0.61 0.00 0.00 1.32 1.63 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 K alternative_acceptor msps,I_chr3R_11877071_11877796 chr3R + chr3R_11885407_11885463 chr3R_11885407_11885460 chr3R_11885207_11885406;chr3R_11885464_11886397 98.55 98.68 98.70 98.31 98.04 98.61 96.67 96.88 98.16 100.00 97.96 99.28 98.57 100.00 97.37 98.29 98.48 98.36 98.73 94.74 98.53 98.70 99.13 98.33 98.70 100.00 98.11 97.96 100.00 98.55 98.82 98.33 98.85 99.19 98.70 98.55 96.74 97.18 96.72 98.61 98.61 98.74 98.31 97.26 100.00 97.32 97.87 99.02 99.21 99.10 97.01 98.11 98.04 98.46 99.07 97.83 98.95 98.84 K multi_cassette noncoding_24933,sw chrX - chrX_20101671_20105848 chrX_20101671_20103190;chrX_20103239_20104496;chrX_20104518_20105848 chrX_20103191_20103238;chrX_20104497_20104517 chrX_20101515_20101670;chrX_20105849_20105976 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA K jcn_only_AD Msp-300,I_chr2L_5154189_5154247,I_chr2L_5197634_5197866 chr2L + chr2L_5148883_5154247 chr2L_5152356_5154247 chr2L_5154248_5154347 8.61 0.00 2.70 8.33 7.41 14.81 5.26 12.82 9.17 NA 3.23 12.00 6.38 10.26 11.76 12.00 10.87 5.56 19.35 8.20 25.00 5.56 12.12 NA NA 6.90 NA NA NA NA 16.67 NA 4.55 5.63 NA NA 3.12 NA NA NA NA 10.91 6.90 15.00 NA NA NA 5.00 11.11 NA NA NA NA NA 8.89 NA NA NA K jcn_only_AD Mtor,I_chr2R_7747557_7747819 chr2R + chr2R_7747557_7747819 chr2R_7747569_7747819 chr2R_7747820_7747919;chr2R_7747457_7747556 100.00 100.00 100.00 98.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.25 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.43 99.46 100.00 100.00 100.00 99.26 100.00 98.90 100.00 100.00 100.00 100.00 99.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.17 100.00 100.00 100.00 100.00 99.40 100.00 100.00 100.00 100.00 100.00 100.00 99.36 99.50 K intron_retention CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8176052_8176572 chr2L_8176051_8176052;chr2L_8176572_8176573 chr2L_8175995_8176051;chr2L_8176573_8176806 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 2.02 0.00 0.00 0.00 0.00 0.00 2.88 0.96 2.60 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG18643,F_chr3R_7256294_7256363 chr3R + chr3R_7255993_7256060 chr3R_7255997_7256060 chr3R_7256061_7256293;chr3R_7255963_7255992 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA 7.69 NA NA NA NA 4.35 K intron_retention sprt,CG30022 chr2R - chr2R_7272948_7273060 chr2R_7272947_7272948;chr2R_7273060_7273061 chr2R_7272275_7272947;chr2R_7273061_7274101 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.13 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG3262 chr2L + chr2L_22240104_22240169 chr2L_22240104_22240153 chr2L_22239906_22240103;chr2L_22240170_22240402 41.09 49.02 35.51 44.27 42.59 40.38 42.66 36.18 46.29 31.96 36.69 39.95 51.26 39.08 36.33 42.24 37.50 37.50 38.18 34.34 35.33 42.74 36.14 39.84 46.34 43.41 39.04 31.51 43.72 50.94 18.66 42.39 45.42 37.87 45.30 31.79 35.29 45.14 43.60 40.11 54.21 39.46 34.10 44.13 53.50 43.79 41.95 41.09 37.50 41.08 50.57 44.08 41.33 45.21 36.58 42.07 40.48 46.92 K intron_retention RI_chrX_1796525_1796585,mip130,I_chrX_1820956_1821011,CG11596 chrX + chrX_1821953_1822366 chrX_1821952_1821953;chrX_1822366_1822367 chrX_1821726_1821952;chrX_1822367_1822613 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.79 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.67 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette KCNQ,I_chr2R_6034329_6034563,I_chr2R_6039928_6040408 chr2R - chr2R_6035658_6038360 chr2R_6035658_6036137;chr2R_6036600_6036852;chr2R_6036946_6038360 chr2R_6036138_6036599;chr2R_6036853_6036945 chr2R_6035587_6035657;chr2R_6038361_6038372 100.00 NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 40.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 75.00 NA NA NA NA 100.00 NA NA 100.00 100.00 NA NA NA NA NA NA NA NA 83.33 K alternative_last_exon spi,I_chr2L_19569183_19577185,I_chr2L_19569227_19572142,I_chr2L_19569227_19577173 chr2L - chr2L_19569227_19572499 chr2L_19571768_19572499 chr2L_19567812_19569226 chr2L_19571572_19571767 chr2L_19572500_19572711 65.79 85.48 76.32 50.94 81.25 60.00 69.57 65.79 50.00 22.00 50.00 57.33 52.00 41.03 60.00 78.43 86.67 88.46 54.72 78.65 89.66 42.11 58.71 77.27 50.00 70.00 73.85 36.84 51.28 84.91 68.52 54.76 67.89 69.84 70.79 81.08 36.67 61.73 58.23 38.79 67.11 69.51 84.62 47.37 61.54 69.09 72.92 56.80 70.00 51.81 78.90 58.73 44.44 51.04 68.52 72.37 56.52 84.31 K jcn_only_AA CG1637,I_chrX_10767807_10771447 chrX - chrX_10766073_10771447;chrX_10767742_10771447;chrX_10770030_10771447 chrX_10770033_10771447 chrX_10771448_10771547 2.29 0.82 2.70 0.00 3.91 0.79 0.00 1.01 0.62 4.11 4.42 2.46 0.78 0.67 1.86 2.38 2.56 5.93 4.38 1.59 5.22 2.07 0.76 3.66 0.79 1.22 3.52 3.14 2.44 3.76 2.33 3.70 2.61 2.31 0.00 0.61 2.56 1.41 2.07 1.93 0.00 2.79 0.94 2.29 5.80 2.60 3.23 2.73 2.19 0.51 1.87 0.00 1.71 2.89 2.01 3.51 2.09 2.91 K cassette Sulf1,I_chr3R_12140969_12163566,I_chr3R_12140969_12165032,I_chr3R_12147892_12156641,EI_chr3R_12156679_12165032 chr3R - chr3R_12140969_12163566 chr3R_12140969_12156641;chr3R_12156679_12163566 chr3R_12156642_12156678 chr3R_12140869_12140968;chr3R_12163567_12163666 100.00 NA NA NA NA NA NA 100.00 88.89 NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5006553_5008568;chr2R_5006553_5008282;chr2R_5006553_5007804 chr2R_5006553_5008598 chr2R_5006405_5006552;chr2R_5008599_5008637 1.61 2.27 4.76 0.00 0.00 3.03 3.03 0.00 1.20 4.65 0.00 0.00 0.00 0.00 0.00 2.00 0.00 3.57 0.00 0.98 3.23 0.00 2.56 1.79 0.00 0.00 1.72 5.41 5.00 0.00 0.00 3.92 1.47 1.67 4.76 1.69 1.69 6.25 3.33 1.06 0.00 0.00 0.00 0.00 4.55 1.69 2.27 1.47 0.00 3.51 1.61 2.78 2.33 0.00 0.00 5.56 5.36 0.00 K intron_retention Ptp99A,I_chr3R_25302126_25302175 chr3R + chr3R_25308795_25308851 chr3R_25308794_25308795;chr3R_25308851_25308852 chr3R_25308239_25308794;chr3R_25308852_25309120 0.00 0.00 NA 4.00 NA 0.00 0.00 0.00 3.85 0.00 0.00 3.85 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 NA 5.88 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA 4.26 0.00 0.00 0.00 0.00 0.00 3.57 NA 0.00 0.00 K intron_retention msb1l chr2L + chr2L_19577975_19578039 chr2L_19577974_19577975;chr2L_19578039_19578040 chr2L_19577735_19577974;chr2L_19578040_19579131 1.48 1.74 1.15 2.99 1.28 0.00 0.93 1.32 0.59 0.00 0.00 1.69 1.03 2.22 0.79 1.71 0.00 0.00 2.75 0.00 0.00 5.88 0.81 3.76 0.00 1.79 0.00 3.03 1.82 0.00 0.00 0.00 2.56 2.00 2.22 0.00 1.94 2.04 1.48 2.75 0.00 2.02 1.06 0.00 0.00 0.00 2.54 2.60 1.48 0.00 1.61 2.08 1.75 2.50 3.85 2.63 2.78 2.22 K alternative_acceptor I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_927771_929704,CG32021,RI_chr4_928180_928245,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_928177_928245;chr4_928180_928245 chr4_928193_928245 chr4_928246_928314;chr4_928109_928176 22.50 25.00 20.00 43.59 22.50 15.91 14.05 32.26 26.53 18.52 25.00 28.12 27.03 40.48 25.32 22.86 24.32 19.57 21.74 29.07 15.91 31.61 27.55 22.50 21.54 30.61 35.34 32.58 25.64 17.72 20.00 23.68 43.08 25.00 20.31 24.00 17.72 25.00 20.22 15.50 29.09 20.43 22.00 14.29 20.75 16.22 25.00 16.85 27.84 15.19 15.00 16.36 25.00 18.92 21.82 18.75 22.22 31.25 K alternative_acceptor trc,I_chr3L_19826244_19826323 chr3L - chr3L_19825813_19825869 chr3L_19825825_19825869 chr3L_19825870_19825976;chr3L_19825328_19825812 9.43 2.94 8.70 18.75 8.33 8.33 12.00 12.00 11.11 2.94 3.85 9.43 12.00 15.00 8.33 10.71 6.25 4.00 17.65 9.52 4.17 10.91 7.46 9.43 7.89 4.17 10.71 23.21 3.77 15.79 17.86 8.70 11.11 10.00 10.00 7.89 11.86 6.25 12.50 10.87 9.30 10.91 3.85 11.76 12.82 6.12 5.26 8.33 13.89 11.63 3.85 10.00 10.81 17.14 8.57 6.38 8.82 7.32 N jcn_only_AA cana,cana_CG33695 chr2L + chr2L_11271534_11272684 chr2L_11271534_11272496 chr2L_11270698_11271533 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 0.00 24.32 NA NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA K cassette CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21278430_21281131;chr2L_21275807_21281131 chr2L_21278430_21279883,chr2L_21275807_21279883;chr2L_21280448_21281131 chr2L_21279884_21280447 chr2L_21275724_21275806;chr2L_21281132_21281337 6.56 3.45 8.70 18.33 6.82 7.32 10.14 7.23 8.55 9.43 5.56 6.25 5.13 7.41 10.00 4.00 6.67 5.00 3.45 10.43 5.41 10.13 8.33 7.53 6.78 3.70 8.33 9.43 13.64 5.26 9.26 4.00 7.89 5.68 7.94 12.86 7.69 8.47 7.50 4.00 3.77 7.87 4.44 6.49 6.52 4.00 4.62 4.29 8.16 3.37 5.88 6.56 5.77 5.08 5.17 5.63 4.11 4.23 K intron_retention Syx13,RI_chr3L_13037959_13038017,CG11279 chr3L + chr3L_13037666_13038017 chr3L_13037665_13037666;chr3L_13038017_13038018 chr3L_13037535_13037665;chr3L_13038018_13038117 17.46 20.00 15.79 28.57 10.87 8.70 21.67 12.33 20.43 15.09 21.43 14.29 11.90 8.16 17.81 25.00 11.63 10.42 21.05 12.93 19.15 30.13 20.99 18.99 20.31 23.40 18.00 17.86 22.58 23.81 21.43 16.36 12.90 11.94 10.94 29.51 26.09 21.57 19.51 15.06 20.00 16.52 17.14 10.34 16.28 10.89 10.11 9.09 13.68 19.30 22.62 22.58 12.73 17.46 11.86 12.00 18.75 16.88 K jcn_only_AD tral,I_chr3L_12511355_12511540,I_chr3L_12512171_12512251 chr3L + chr3L_12511325_12511537 chr3L_12511355_12511537 chr3L_12511538_12511767;chr3L_12511255_12511324 82.46 82.17 87.68 76.50 86.08 86.06 81.79 84.26 85.82 73.28 85.33 87.97 85.29 91.67 83.12 91.08 88.30 85.00 88.52 86.42 87.50 73.02 80.09 79.94 85.71 88.80 81.14 78.18 86.58 77.55 82.74 84.09 84.76 82.48 80.52 74.81 78.22 76.90 79.38 59.29 83.42 86.81 82.35 75.15 77.26 73.68 77.53 82.46 87.03 73.90 80.27 81.70 81.76 78.74 87.09 81.00 80.07 83.91 K jcn_only_AD RI_chr3L_201061_201173,NitFhit,I_chr3L_212783_212843 chr3L + chr3L_203762_203843 chr3L_203791_203843 chr3L_203844_205311;chr3L_203699_203761 100.00 NA 100.00 98.39 100.00 100.00 100.00 100.00 100.00 NA 92.00 100.00 95.24 NA 97.30 100.00 93.33 97.78 100.00 98.59 100.00 100.00 NA NA NA 100.00 NA NA 95.83 100.00 96.15 100.00 98.97 98.08 NA NA NA NA NA 100.00 96.88 96.83 100.00 NA 100.00 100.00 NA 100.00 97.10 NA NA NA NA NA 97.50 NA NA 98.59 K alternative_acceptor CG9007,I_chr3L_13995402_13996269,I_chr3L_13995402_13996272,I_chr3L_13995402_13996296,I_chr3L_13995480_13996292,RI_chr3L_14010982_14011111 chr3L + chr3L_13995402_13996272;chr3L_13995402_13996292;chr3L_13995402_13996269 chr3L_13995402_13996296 chr3L_13995380_13995401;chr3L_13996297_13996360 5.57 NA 12.50 7.14 NA NA 0.00 5.26 6.67 NA NA 0.00 NA NA 14.29 10.53 NA NA 12.50 12.50 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA 9.09 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA NA NA 0.00 5.88 NA NA NA NA NA 10.00 NA NA NA K intron_retention CG32809,I_chrX_1577031_1577129,CEI_chrX_1579569_1579679,RI_chrX_1585391_1586471,I_chrX_1589508_1589564 chrX - chrX_1578591_1578663 chrX_1578590_1578591;chrX_1578663_1578664 chrX_1578486_1578590;chrX_1578664_1578729 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 7.69 0.00 11.11 NA NA NA NA NA NA NA 0.00 NA 9.52 0.00 0.00 0.00 0.00 NA NA 12.50 0.00 0.00 NA 11.76 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 12.00 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention spn-A,I_chr3R_25881521_25881590 chr3R - chr3R_25881521_25881583 chr3R_25881520_25881521;chr3R_25881583_25881584 chr3R_25881421_25881520;chr3R_25881584_25881755 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.03 0.00 0.00 2.70 2.41 0.00 0.00 1.82 2.67 0.00 0.00 2.78 0.00 0.00 2.50 5.13 10.00 5.08 0.00 2.90 0.00 0.00 2.15 0.00 2.04 0.00 0.00 0.00 0.00 3.64 0.00 0.00 0.00 0.00 0.00 0.00 1.80 0.00 2.08 0.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 K jcn_only_AD None chrU - chrU_5771599_5771684;chrU_5771599_5771693 chrU_5771599_5771833 1.07 0.95 0.61 0.84 1.23 1.38 1.46 1.13 1.00 0.81 0.50 1.07 1.30 1.24 0.41 0.62 0.45 0.78 0.57 0.98 0.26 0.81 3.04 1.58 1.72 0.86 0.96 1.13 1.81 0.81 0.79 0.80 1.29 1.18 1.36 2.16 1.26 1.32 1.62 1.64 0.67 1.41 0.85 0.81 1.05 1.20 1.16 0.76 1.11 1.84 1.37 1.58 0.40 1.07 0.87 1.83 1.71 0.67 K cassette Pfk,I_chr2R_5999081_6000140,E_chr2R_6001157_6001630 chr2R + chr2R_6000676_6002421;chr2R_6001157_6002421 chr2R_6000676_6001630,chr2R_6001157_6001630;chr2R_6001740_6002421 chr2R_6001631_6001739 chr2R_6000521_6000675;chr2R_6002422_6002610 32.43 32.35 32.43 23.26 56.00 42.86 36.00 52.78 39.53 26.87 41.38 36.84 60.00 40.00 42.11 68.42 26.67 17.65 66.67 51.22 37.04 9.89 34.74 24.71 36.21 43.75 26.60 19.23 15.00 38.60 42.50 28.57 36.73 50.00 29.79 13.64 32.41 27.94 26.40 31.75 25.00 33.85 29.41 33.82 25.42 27.94 29.69 30.77 40.48 33.77 34.57 42.00 31.03 31.58 48.15 29.31 30.19 23.81 K cassette Edem2 chr2L + chr2L_13195405_13195749 chr2L_13195405_13195580;chr2L_13195680_13195749 chr2L_13195581_13195679 chr2L_13195133_13195404;chr2L_13195750_13197281 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 99.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 97.14 97.83 100.00 100.00 85.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 98.72 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_last_exon CG30387,CG30386,I_chr2R_17184688_17191389 chr2R + chr2R_17183719_17191389 chr2R_17183719_17187341 chr2R_17191390_17191524 chr2R_17187342_17187978 chr2R_17183650_17183718 0.00 0.00 0.00 4.17 7.69 0.00 4.55 3.12 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 9.09 4.17 5.56 7.69 0.00 0.00 0.00 11.11 0.00 0.00 NA 7.69 0.00 0.00 9.09 4.17 0.00 4.00 0.00 NA 3.23 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA K jcn_only_AD RI_chr3R_7061265_7061322,CG31388 chr3R + chr3R_7064332_7064678 chr3R_7064623_7064678 chr3R_7064679_7064763;chr3R_7063775_7064331 85.31 NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K multi_cassette DCAP,E_chr2R_6159586_6174578,I_chr2R_6164310_6172914,I_chr2R_6172307_6179999,I_chr2R_6178643_6181126,RI_chr2R_6183553_6192101,I_chr2R_6188094_6192101 chr2R + chr2R_6172307_6181126 chr2R_6172307_6179999;chr2R_6180378_6180845;chr2R_6180945_6181126 chr2R_6180000_6180377;chr2R_6180846_6180944 chr2R_6172207_6172306;chr2R_6181127_6181226 100.00 75.00 75.00 NA 100.00 100.00 100.00 75.00 80.00 100.00 NA 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 80.00 NA NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 75.00 100.00 100.00 100.00 100.00 NA 83.33 NA 100.00 100.00 100.00 100.00 NA 100.00 75.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG13937,RI_chr3L_1877663_1877719 chr3L - chr3L_1881477_1882999;chr3L_1881558_1882999 chr3L_1881549_1882999 chr3L_1883000_1883037;chr3L_1881129_1881476 50.00 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA 16.67 NA NA NA 44.44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA K jcn_only_AA pim chr2L + chr2L_10363139_10363201 chr2L_10363139_10363185 chr2L_10362977_10363138;chr2L_10363202_10363525 0.00 NA NA 0.00 NA NA 0.00 3.12 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA 3.85 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 2.56 NA NA NA NA NA NA NA NA NA K intron_retention CG31211 chr3R + chr3R_7777961_7778362 chr3R_7777960_7777961;chr3R_7778362_7778363 chr3R_7777954_7777960;chr3R_7778363_7778390 26.09 28.57 23.08 26.47 39.13 24.14 34.78 33.33 32.65 19.05 35.00 22.45 39.29 36.84 29.17 34.21 36.36 26.09 29.73 22.81 27.78 21.05 24.49 19.51 46.67 33.33 26.47 27.27 13.04 28.21 35.14 14.29 7.41 25.00 31.82 50.00 21.43 21.21 9.09 24.39 25.00 34.69 26.09 24.32 29.17 28.12 23.81 18.52 32.73 22.73 22.22 21.88 17.86 29.41 37.50 25.58 18.75 21.62 K jcn_only_AD Best1,I_chr3R_5991957_5995913,RI_chr3R_5993184_5995905 chr3R - chr3R_5989579_5990296;chr3R_5989579_5990058 chr3R_5989579_5990440 chr3R_5988921_5989578;chr3R_5990441_5990683 95.61 95.74 96.00 96.27 99.02 94.57 92.45 95.92 97.27 99.21 97.53 98.41 96.67 95.41 92.80 95.00 96.10 97.30 93.75 98.17 93.68 91.55 94.02 97.01 96.43 97.30 94.52 100.00 93.02 98.04 89.31 89.06 92.77 96.73 95.79 94.62 95.31 95.21 97.96 95.94 93.10 96.31 97.53 95.36 96.84 94.41 97.22 95.24 93.79 94.17 93.33 94.23 94.12 95.61 98.11 93.33 89.86 96.30 K cassette Atpalpha,I_chr3R_16788018_16789830,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16783890_16789446;chr3R_16785103_16789446 chr3R_16785103_16787936,chr3R_16783890_16787936;chr3R_16788018_16789446 chr3R_16787937_16788017 chr3R_16783790_16783889;chr3R_16789447_16789578 57.65 52.67 46.43 43.06 31.07 28.33 31.05 41.94 49.50 61.02 12.00 87.36 49.47 43.70 43.97 44.83 27.86 44.79 42.75 72.77 27.96 62.64 62.69 68.00 57.78 44.00 52.63 67.39 77.27 56.32 52.50 70.37 65.87 36.25 57.04 71.32 61.62 65.22 64.42 66.67 65.33 40.67 44.95 60.36 76.27 68.07 59.09 75.00 39.44 51.00 57.65 65.71 61.67 60.47 44.52 63.83 60.94 57.65 K intron_retention Sep1 chrX + chrX_21230732_21230797 chrX_21230731_21230732;chrX_21230797_21230798 chrX_21230539_21230731;chrX_21230798_21231056 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.53 0.00 0.00 0.00 0.57 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Nacalpha,I_chr2R_8648027_8648303 chr2R - chr2R_8648027_8648305 chr2R_8648026_8648027;chr2R_8648305_8648306 chr2R_8647927_8648026;chr2R_8648306_8648314 3.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.77 NA NA NA NA NA NA NA NA NA NA NA 2.58 NA NA NA 0.00 NA 30.77 NA NA 20.00 NA NA NA 4.48 NA NA NA NA 0.00 K intron_retention CG7324,I_chr3L_21335553_21335702,I_chr3L_21340055_21342206 chr3L - chr3L_21334616_21334674 chr3L_21334615_21334616;chr3L_21334674_21334675 chr3L_21334467_21334615;chr3L_21334675_21335236 3.20 5.00 0.00 3.92 2.94 2.13 5.47 5.61 6.20 NA 0.00 2.63 3.70 2.04 0.00 4.48 0.00 6.25 6.35 4.60 3.45 0.00 4.76 5.00 0.00 4.17 4.55 0.00 0.00 0.00 6.56 NA 0.00 2.04 0.00 0.00 12.00 6.25 5.00 8.00 0.00 3.16 1.92 7.32 NA 0.00 0.00 NA 6.80 7.69 6.25 3.23 NA NA 1.54 0.00 0.00 NA K intron_retention Pp4-19C,RI_chrX_20293980_20294069,REI_chrX_20294004_20294672 chrX - chrX_20293022_20293085 chrX_20293021_20293022;chrX_20293085_20293086 chrX_20292114_20293021;chrX_20293086_20293979 0.00 0.87 0.00 0.00 0.00 0.00 1.42 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 1.01 0.00 0.00 0.00 1.20 2.75 2.65 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD MB8.chr3R.pasa.66,CG1091,I_chr3R_2910490_2910662,RI_chr3R_2910490_2910686,RI_chr3R_2911041_2911135,RI_chr3R_2946518_2946663 chr3R - chr3R_2910490_2910686;chr3R_2910490_2910646 chr3R_2910490_2910662 chr3R_2910390_2910489;chr3R_2910687_2910762 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.93 0.00 0.00 0.00 0.91 0.00 2.08 1.47 0.00 0.00 0.00 2.27 0.00 0.00 1.89 1.39 0.00 0.00 0.00 2.17 3.12 0.00 0.00 2.26 0.00 0.83 1.92 1.92 0.00 0.00 0.00 0.00 2.42 0.00 0.00 0.00 0.00 1.08 1.37 0.00 0.00 0.00 0.00 0.00 1.69 1.96 0.00 0.00 1.54 0.00 0.76 K intron_retention CG31342,I_chr3R_8813079_8814327,I_chr3R_8822346_8822403 chr3R + chr3R_8816222_8816274 chr3R_8816221_8816222;chr3R_8816274_8816275 chr3R_8816063_8816221;chr3R_8816275_8817262 1.56 0.00 0.78 2.72 0.73 2.44 1.23 1.55 2.22 2.99 2.11 3.57 2.13 1.75 2.92 1.88 2.75 2.38 1.56 1.87 1.71 4.58 3.54 0.00 0.00 0.76 5.19 6.35 2.44 0.00 2.69 0.00 2.02 3.50 0.00 4.12 2.92 0.93 0.00 1.42 1.15 1.59 0.00 1.98 0.00 0.00 1.71 3.85 1.30 0.00 1.52 0.00 0.00 1.05 0.00 0.81 0.00 0.00 K intron_retention CG2694,I_chrX_2609471_2609546,RI_chrX_2622297_2622430,RI_chrX_2622435_2622577 chrX + chrX_2609467_2609546 chrX_2609466_2609467;chrX_2609546_2609547 chrX_2609371_2609466;chrX_2609547_2609646 0.00 NA NA 26.32 NA 0.00 NA 6.25 0.00 14.29 NA 0.00 NA 0.00 12.50 9.52 NA 0.00 0.00 12.00 NA 0.00 20.00 4.17 NA NA 15.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA 6.67 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 12.50 10.53 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention step,I_chr2L_21743972_21757163,RI_chr2L_21747333_21756553,CREI_chr2L_21753815_21756553 chr2L - chr2L_21756628_21757163 chr2L_21756627_21756628;chr2L_21757163_21757164 chr2L_21756554_21756627;chr2L_21757164_21757263 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516399_21517821 chr3L_21516398_21516399;chr3L_21517821_21517822 chr3L_21516383_21516398;chr3L_21517822_21517920 63.07 NA NA 53.33 NA NA 70.59 53.85 72.22 NA NA 56.25 NA NA 54.55 54.55 NA NA NA 68.75 NA 50.00 64.29 NA NA NA 63.64 90.00 80.00 NA NA NA NA 58.33 NA NA 62.50 NA NA 53.33 NA 65.00 NA 50.00 NA NA NA NA 64.29 NA NA NA NA NA 63.64 NA NA NA K jcn_only_AA eIF-4a,I_chr2L_5985221_5985289 chr2L + chr2L_5985221_5985289;chr2L_5985221_5985338 chr2L_5985221_5985342 chr2L_5985121_5985220;chr2L_5985343_5985389 1.01 1.27 0.95 1.14 0.88 1.14 1.41 0.93 1.18 0.93 0.91 1.14 0.86 0.65 1.33 1.16 1.05 1.46 1.26 0.86 0.94 0.52 0.96 1.16 0.74 0.95 1.17 0.87 1.30 0.45 1.19 1.16 0.73 1.14 0.99 0.79 1.35 0.88 1.16 0.54 0.79 1.01 1.35 1.12 1.13 0.78 0.92 1.16 0.96 0.98 0.96 1.14 1.17 1.33 1.19 1.01 1.19 0.89 K intron_retention Pten,I_chr2L_10256507_10256803,F_chr2L_10259663_10260253 chr2L - chr2L_10260585_10260741 chr2L_10260584_10260585;chr2L_10260741_10260742 chr2L_10260254_10260584;chr2L_10260742_10260850 92.31 100.00 90.00 95.24 NA NA 95.24 100.00 95.45 NA NA 88.89 92.31 93.33 100.00 95.65 100.00 NA 83.33 96.00 NA 88.89 92.31 NA NA NA 100.00 NA 88.89 91.67 NA NA 100.00 94.74 88.89 87.50 NA 90.91 87.50 90.00 91.67 95.00 88.89 91.67 NA 100.00 NA 81.25 95.24 NA 92.31 81.82 NA NA 90.91 NA NA 90.00 K mutually_exclusive pho,RI_chr4_1193657_1194431,I_chr4_1193830_1194784,EI_chr4_1193830_1195360,RI_chr4_1193830_1195384,I_chr4_1193830_1201673 chr4 - chr4_1193657_1194431,chr4_1194724_1194784 chr4_1193657_1193709,chr4_1193830_1194784 chr4_1194432_1194723 chr4_1193710_1193829 chr4_1193557_1193656;chr4_1194785_1194884 80.00 NA 75.00 85.71 50.00 NA 83.33 50.00 87.50 NA NA 80.00 NA NA NA 75.00 NA NA NA 90.91 NA NA 62.50 NA NA 66.67 80.00 NA NA NA NA NA NA 83.33 NA NA NA NA 20.00 83.33 NA 83.33 NA NA NA NA NA NA NA NA NA 80.00 25.00 80.00 80.00 NA NA NA K intron_retention dbo chr3L + chr3L_15823559_15823678 chr3L_15823558_15823559;chr3L_15823678_15823679 chr3L_15823371_15823558;chr3L_15823679_15824009 92.59 82.35 89.47 88.46 90.91 86.67 95.24 87.50 84.62 100.00 93.33 78.12 90.48 100.00 100.00 95.83 92.31 100.00 90.00 96.77 100.00 78.79 96.15 90.91 76.47 94.44 89.66 60.00 90.48 94.44 92.86 92.31 92.31 95.83 94.74 65.00 78.95 94.12 100.00 77.42 100.00 94.29 100.00 84.21 80.00 100.00 100.00 100.00 92.59 93.33 94.74 94.44 66.67 78.57 100.00 90.48 93.33 83.33 K jcn_only_AD CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907784_9908424;chr2L_9907784_9908531;chr2L_9907784_9908405 chr2L_9907784_9908307 chr2L_9907756_9907783;chr2L_9908532_9908619 3.28 3.33 6.38 2.22 7.89 3.57 4.48 5.56 5.52 NA 2.94 3.00 2.17 1.56 6.25 11.11 4.55 4.62 4.94 1.49 5.13 2.61 2.65 4.05 1.89 1.79 1.09 5.88 1.79 2.82 3.70 6.67 1.41 5.00 7.46 0.00 2.50 3.23 4.35 3.92 5.71 3.23 7.32 3.53 3.33 0.00 0.00 0.00 3.03 5.56 3.23 2.00 3.92 5.71 2.44 2.04 0.00 0.00 K intron_retention CG5068 chr3L + chr3L_8980059_8980126 chr3L_8980058_8980059;chr3L_8980126_8980127 chr3L_8979812_8980058;chr3L_8980127_8980325 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG1308,CG1295 chr3L + chr3L_4195388_4195840 chr3L_4195388_4195595;chr3L_4195716_4195840 chr3L_4195596_4195715 chr3L_4195360_4195387;chr3L_4195841_4195990 100.00 100.00 100.00 92.86 NA 100.00 100.00 100.00 89.47 NA 83.33 100.00 87.50 100.00 100.00 83.33 100.00 100.00 NA 100.00 100.00 100.00 93.75 85.71 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 87.50 90.00 100.00 90.00 92.31 NA 94.44 NA 88.89 NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA K alternative_acceptor ct chrX + chrX_7554924_7554995 chrX_7554924_7554992 chrX_7554439_7554923;chrX_7554996_7555171 90.00 94.12 92.31 90.00 93.75 100.00 82.35 92.31 87.50 90.91 73.68 89.29 91.67 92.86 93.33 88.24 76.47 94.44 93.33 78.12 90.00 93.33 76.67 83.33 88.89 93.33 93.33 80.00 NA 60.00 90.00 NA 100.00 87.10 88.89 84.62 92.31 94.12 80.00 91.67 NA 80.00 100.00 95.00 NA NA NA 71.43 87.50 NA 82.61 88.89 NA NA 76.47 88.89 100.00 NA K alternative_acceptor CG42541,F_chrX_3804144_3804471,F_chrX_3805550_3805649 chrX - chrX_3799931_3800237 chrX_3799934_3800237 chrX_3800238_3800291;chrX_3799825_3799930 84.62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 84.62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor RpS7,E_chr3R_26032339_26034298 chr3R - chr3R_26034380_26034638 chr3R_26034380_26034635 chr3R_26034299_26034379;chr3R_26034639_26034688 0.96 1.85 0.43 0.39 0.93 0.88 1.89 0.17 0.00 1.06 1.22 1.42 2.78 1.12 1.46 2.08 1.41 2.29 1.30 1.31 0.00 0.59 4.26 4.62 3.33 1.80 0.00 0.00 0.96 2.82 1.26 0.17 0.19 0.63 0.00 0.00 2.13 0.00 6.00 0.90 0.37 0.57 2.15 1.01 0.52 2.01 4.88 0.43 2.37 5.56 0.00 0.00 0.00 0.00 0.96 0.00 0.86 0.30 K intron_retention CG8451 chr2L - chr2L_8202300_8202357 chr2L_8202299_8202300;chr2L_8202357_8202358 chr2L_8202232_8202299;chr2L_8202358_8202409 2.50 9.09 0.00 10.00 NA 0.00 2.13 9.09 10.42 NA 0.00 9.68 0.00 0.00 0.00 14.71 6.25 0.00 0.00 3.51 0.00 0.00 2.86 4.26 0.00 NA 4.17 15.38 0.00 5.00 0.00 NA NA 6.25 0.00 0.00 0.00 0.00 0.00 6.25 NA 4.35 7.14 0.00 NA 6.67 6.45 NA 13.64 8.00 4.17 3.85 0.00 0.00 11.54 0.00 0.00 NA K intron_retention Prosalpha5,RI_chr2R_13310877_13311160 chr2R + chr2R_13300349_13300409 chr2R_13300348_13300349;chr2R_13300409_13300410 chr2R_13300293_13300348;chr2R_13300410_13300548 0.00 0.00 2.13 6.72 0.00 0.00 7.20 1.33 1.53 0.00 0.00 0.63 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.97 0.00 9.62 7.44 6.49 0.00 14.04 2.70 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 2.11 3.06 6.25 2.73 0.00 0.00 0.00 2.74 0.00 0.00 0.58 1.19 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 K intron_retention Uhg5,noncoding_6835,snoRNA:Or-CD4 chr2R + chr2R_10511726_10511907 chr2R_10511725_10511726;chr2R_10511907_10511908 chr2R_10511662_10511725;chr2R_10511908_10511999 0.00 NA NA 0.00 NA NA 6.06 0.00 14.29 NA NA 0.00 0.00 0.00 NA 5.00 NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 4.17 NA NA NA NA NA NA 2.78 0.00 NA NA NA NA NA NA 0.00 0.00 K alternative_last_exon spi,I_chr2L_19569183_19577185,I_chr2L_19569227_19572142,I_chr2L_19569227_19577173 chr2L - chr2L_19569227_19577185 chr2L_19571768_19577185 chr2L_19567812_19569226 chr2L_19571572_19571767 chr2L_19577186_19577273 59.61 59.34 70.18 38.24 48.32 62.07 62.76 61.80 60.61 32.08 62.42 50.00 68.33 65.18 54.94 66.22 66.06 60.98 74.44 59.61 66.84 39.34 66.50 56.60 43.36 64.77 57.34 21.11 18.58 61.32 64.29 54.84 72.32 69.57 76.65 58.26 40.00 58.77 47.65 50.96 63.76 62.10 66.36 53.91 43.50 70.87 51.55 62.81 58.26 50.80 62.20 57.21 51.27 58.05 66.02 56.48 60.58 54.64 K alternative_acceptor l(2)gl,I_chr2L_17213_21135,RI_chr2L_20021_20830,I_chr2L_20974_21065 chr2L - chr2L_20016_21065 chr2L_20021_21065 chr2L_21066_21106;chr2L_19921_20015 87.50 NA NA NA NA NA NA 87.50 83.33 NA NA 92.31 NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 81.82 NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA 90.91 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG1316 chr3L + chr3L_4285921_4286171 chr3L_4286002_4286171 chr3L_4286172_4286865;chr3L_4285847_4285920 0.00 0.00 0.00 0.00 1.41 1.32 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.82 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 8.05 0.00 0.00 0.39 0.23 1.18 0.00 1.03 0.86 0.00 0.77 0.62 0.00 0.93 0.00 0.00 0.72 0.69 0.00 0.00 0.98 1.50 0.93 0.00 0.00 0.00 1.09 0.00 0.00 0.33 K jcn_only_AA None chrU - chrU_7542937_7543011 chrU_7542952_7543011 1.41 1.56 1.88 1.53 0.99 0.55 1.11 2.13 1.55 1.14 2.59 1.12 1.41 1.29 1.33 2.66 2.01 0.99 1.26 0.94 1.39 1.81 0.98 1.68 1.98 2.05 1.02 0.57 0.88 0.89 1.70 1.58 1.29 1.33 1.04 0.63 1.23 1.87 0.94 2.20 1.47 1.28 2.03 1.80 1.41 0.99 1.00 1.50 1.72 0.67 2.10 1.32 1.62 1.20 1.42 2.08 1.72 2.04 K mutually_exclusive I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499338_1499771,chr3L_1499880_1501798;chr3L_1499338_1501350,chr3L_1501407_1501798 chr3L_1499338_1500244,chr3L_1500389_1501798 chr3L_1499772_1499879;chr3L_1501351_1501406 chr3L_1500245_1500388 chr3L_1499043_1499337;chr3L_1501799_1501892 75.00 NA 60.00 70.00 NA NA NA 75.00 81.82 83.33 NA 76.92 NA NA 75.00 80.00 NA NA 75.00 77.78 NA 85.71 45.45 80.00 66.67 62.50 85.71 63.64 NA NA 75.00 NA 40.00 80.00 80.00 100.00 NA 50.00 33.33 40.00 57.14 75.00 NA 75.00 80.00 85.71 60.00 50.00 77.78 50.00 50.00 66.67 NA 100.00 71.43 50.00 75.00 80.00 K jcn_only_AA CG8080,RI_chr2R_4978542_4978911,REI_chr2R_4978545_4978911,REI_chr2R_4979159_4979234,I_chr2R_4979276_4979936 chr2R - chr2R_4978545_4978911;chr2R_4978557_4978911 chr2R_4978542_4978911 chr2R_4978912_4979011;chr2R_4978445_4978541 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 NA 0.00 0.00 8.00 1.96 0.00 0.00 3.57 4.35 0.00 NA NA 0.00 2.94 8.33 6.45 0.00 NA 4.35 0.00 3.12 3.23 0.00 2.04 NA 0.00 6.52 2.08 7.32 4.55 8.00 0.00 0.00 0.00 1.85 1.67 3.85 0.00 4.62 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.90 K intron_retention Edem1,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1798315_1798525 chrX_1798314_1798315;chrX_1798525_1798526 chrX_1798215_1798314;chrX_1798526_1798625 16.67 6.67 10.81 28.07 21.95 18.42 22.95 26.98 20.88 22.73 2.94 14.12 23.08 22.22 18.18 24.56 19.05 9.80 21.74 12.12 12.77 12.00 17.33 16.67 11.11 20.00 26.47 35.71 17.39 10.00 14.06 12.20 13.33 25.81 18.52 19.15 8.06 8.00 11.11 14.12 25.64 13.89 16.67 12.68 21.43 15.87 12.09 30.30 17.33 6.49 15.25 8.11 8.00 9.23 21.82 9.84 10.14 19.44 K alternative_last_exon CG5050 chr2L + chr2L_17454174_17464927 chr2L_17454174_17458475 chr2L_17464928_17464996 chr2L_17458476_17458775 chr2L_17453884_17454173 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention l(1)G0196,I_chrX_21890195_21895316,I_chrX_21900456_21904601 chrX + chrX_21896112_21897326 chrX_21896111_21896112;chrX_21897326_21897327 chrX_21895869_21896111;chrX_21897327_21897813 9.09 6.25 4.84 12.50 0.00 9.26 11.48 8.24 8.06 6.25 0.00 11.11 17.39 5.36 7.25 9.47 6.52 4.55 14.58 9.17 4.26 12.07 12.90 8.51 15.38 12.12 10.53 15.38 13.16 8.06 10.00 11.43 7.00 6.41 12.73 31.43 9.09 11.76 1.89 7.27 24.24 6.78 8.33 9.72 11.63 9.86 14.81 6.08 11.69 19.05 8.47 8.33 5.26 7.41 11.59 6.67 3.70 5.63 K intron_retention noncoding_21259,REI_chrX_828715_831973,TRAM,I_chrX_829418_830362,I_chrX_829743_831973 chrX + chrX_829743_830362 chrX_829742_829743;chrX_830362_830363 chrX_829643_829742;chrX_830363_830462 4.40 2.90 6.15 5.26 3.39 4.84 2.67 4.40 4.17 2.50 0.00 3.70 3.70 3.64 3.95 8.54 7.55 5.00 5.56 3.79 0.00 7.59 4.55 6.00 6.82 3.33 4.40 2.78 14.58 4.69 4.65 8.00 1.80 3.41 4.62 7.84 5.15 3.03 5.68 7.69 4.08 2.26 4.17 3.53 4.88 6.49 6.90 2.13 3.70 7.79 6.02 2.22 5.95 3.77 2.15 4.55 4.21 2.31 K alternative_last_exon Tequila chr3L + chr3L_9068723_9068771;chr3L_9068723_9080948 chr3L_9068723_9069957 chr3L_9068772_9069365;chr3L_9080949_9083048 chr3L_9069958_9070727 chr3L_9068164_9068722 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention dlg1,I_chrX_11298230_11299306 chrX + chrX_11293850_11294820 chrX_11293849_11293850;chrX_11294820_11294821 chrX_11293775_11293849;chrX_11294821_11294865 0.00 0.00 0.00 0.00 0.00 0.00 29.41 0.00 3.85 0.00 NA 0.00 4.00 0.00 2.63 1.92 0.00 0.00 0.00 1.64 NA 0.00 3.39 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 3.03 2.94 2.50 0.00 1.75 0.00 0.00 0.00 1.92 2.78 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 K jcn_only_AA CG31999,I_chr4_238453_238873,I_chr4_238809_238873,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_238121_238873;chr4_238809_238873 chr4_238453_238873 chr4_238874_238973;chr4_238032_238120 0.00 1.67 0.00 0.00 3.45 0.00 0.00 0.72 1.04 0.00 0.00 0.54 1.90 1.04 1.23 0.72 0.00 2.22 1.63 0.43 3.92 0.00 2.08 1.85 0.00 0.00 2.56 NA 0.00 2.08 1.16 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 1.35 0.00 1.09 0.00 2.22 0.00 0.00 1.43 0.00 0.00 1.75 0.00 0.00 0.00 0.00 1.44 0.00 1.10 0.98 K intron_retention didum,I_chr2R_3393005_3393348 chr2R + chr2R_3394292_3394353 chr2R_3394291_3394292;chr2R_3394353_3394354 chr2R_3394160_3394291;chr2R_3394354_3394882 0.00 0.00 0.00 8.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Galpha49B,I_chr2R_8501587_8501648,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500357_8501648;chr2R_8500357_8501071 chr2R_8500357_8501759 chr2R_8500333_8500356;chr2R_8501760_8501850 2.13 0.00 0.00 7.69 0.00 10.00 3.03 2.70 2.13 0.00 7.69 1.85 5.56 4.35 6.67 2.13 5.26 8.33 4.35 0.00 0.00 0.00 0.00 6.67 0.00 5.56 0.00 0.00 0.00 0.00 5.88 0.00 10.00 0.00 0.00 7.69 0.00 0.00 11.11 8.00 11.11 9.68 0.00 7.14 0.00 6.25 0.00 4.55 5.00 0.00 0.00 7.14 0.00 0.00 5.88 14.29 0.00 0.00 K jcn_only_AA CG5524,I_chr3R_20017846_20017911,I_chr3R_20018643_20018703 chr3R - chr3R_20018643_20018703 chr3R_20018647_20018703 chr3R_20018704_20018803;chr3R_20018543_20018642 100.00 95.83 100.00 100.00 NA 100.00 96.43 97.50 97.44 85.00 NA 100.00 100.00 96.30 100.00 100.00 NA 100.00 100.00 98.08 NA 100.00 96.88 96.00 NA NA 96.67 NA 96.55 92.86 NA 100.00 94.74 100.00 NA NA 100.00 100.00 100.00 100.00 NA 97.96 100.00 100.00 NA 92.59 NA 100.00 100.00 100.00 100.00 100.00 NA NA 97.30 NA NA 100.00 K intron_retention MB8.chr3R.pasa.66,alpha-Est7 chr3R - chr3R_3346798_3346855 chr3R_3346797_3346798;chr3R_3346855_3346856 chr3R_3346234_3346797;chr3R_3346856_3347006 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 7.69 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention unc-13,RI_chr4_892852_895828,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_892701_892752 chr4_892700_892701;chr4_892752_892753 chr4_892538_892700;chr4_892753_892851 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 3.92 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.17 0.00 0.00 0.00 2.70 3.92 0.00 0.00 4.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17471,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1216889_1216945 chr4_1216888_1216889;chr4_1216945_1216946 chr4_1216814_1216888;chr4_1216946_1217001 0.00 0.00 0.00 15.38 0.00 7.69 0.00 0.00 0.00 NA NA 0.00 0.00 6.90 0.00 2.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K jcn_only_AA CG7987,RI_chr3R_10400799_10401492 chr3R - chr3R_10400782_10401492;chr3R_10400799_10401492 chr3R_10400608_10401492 chr3R_10401493_10401559;chr3R_10400270_10400607 52.01 61.70 55.81 58.93 44.44 65.79 33.77 37.14 35.37 NA 51.85 41.75 3.85 36.00 48.98 55.56 47.83 57.14 26.42 58.02 68.18 52.54 62.71 65.22 50.00 23.68 55.10 76.47 41.67 55.00 52.53 52.17 47.83 53.57 45.95 52.94 54.55 70.00 58.54 32.93 NA 50.00 41.18 48.39 76.19 46.88 48.48 40.74 47.42 NA 53.23 39.39 47.83 57.14 53.57 72.41 63.33 48.39 K jcn_only_AD CG9894,RE_chr2L_2752712_2753371,I_chr2L_2753119_2753371,RI_chr2L_2755946_2756007 chr2L + chr2L_2752712_2753371 chr2L_2752838_2753371 chr2L_2753372_2753471;chr2L_2752651_2752711 100.00 100.00 100.00 99.09 100.00 99.33 100.00 99.36 100.00 98.21 100.00 99.09 100.00 100.00 100.00 99.51 98.91 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 99.37 100.00 100.00 99.48 99.39 100.00 96.97 98.65 100.00 100.00 100.00 100.00 98.32 100.00 100.00 100.00 100.00 99.38 100.00 100.00 99.67 96.36 98.18 98.15 100.00 86.36 100.00 100.00 97.37 99.55 K intron_retention Su(var)2-HP2 chr2R - chr2R_10503906_10504014 chr2R_10503905_10503906;chr2R_10504014_10504015 chr2R_10501278_10503905;chr2R_10504015_10504266 0.00 NA NA 0.00 NA NA 0.00 12.50 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA K jcn_only_AD Ptp99A,I_chr3R_25302126_25302175 chr3R + chr3R_25302126_25307188 chr3R_25305548_25307188 chr3R_25307189_25307478;chr3R_25302026_25302125 13.04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention deltaCOP,I_chrX_1754047_1754089,I_chrX_1755132_1755191,E_chrX_1755139_1755188,I_chrX_1757755_1757801 chrX - chrX_1755132_1755191 chrX_1755131_1755132;chrX_1755191_1755192 chrX_1755039_1755131;chrX_1755192_1755288 94.74 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 94.74 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG11534,Atg12 chr3L + chr3L_12126077_12126128 chr3L_12126076_12126077;chr3L_12126128_12126129 chr3L_12125301_12126076;chr3L_12126129_12126936 0.00 NA NA NA NA NA 5.56 0.00 4.35 NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 9.52 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA NA 12.50 NA NA 0.00 0.00 0.00 NA NA NA NA NA NA NA K alternative_donor Sans,RI_chr2R_8825985_8826072,I_chr2R_8826501_8826591 chr2R + chr2R_8824602_8825904;chr2R_8824595_8825904 chr2R_8824493_8825904 chr2R_8825905_8825980;chr2R_8824445_8824492 0.00 NA NA 0.00 NA NA NA NA 14.29 NA 0.00 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 11.11 0.00 16.67 0.00 NA 0.00 0.00 0.00 NA 0.00 14.29 0.00 7.69 K alternative_acceptor CG9293,RI_chr2L_13386386_13386487,I_chr2L_13394941_13395015 chr2L - chr2L_13386258_13386487 chr2L_13386386_13386487 chr2L_13386488_13386508;chr2L_13386099_13386257 16.67 NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 K jcn_only_AD None chrU - chrU_7543573_7543678 chrU_7543573_7543639 99.54 99.70 99.14 99.30 99.35 99.12 99.48 99.57 99.79 99.53 99.79 99.59 99.30 99.43 99.65 99.40 99.93 99.37 99.65 99.39 99.67 99.90 99.20 99.60 99.61 99.74 99.82 99.21 99.42 99.45 99.41 99.29 99.19 99.55 99.58 99.17 99.56 99.78 99.75 99.48 99.41 99.73 99.75 99.82 99.34 99.48 99.79 98.92 99.54 99.70 99.46 99.67 99.47 99.54 99.55 99.81 99.52 99.59 K alternative_last_exon CG34383,RI_chr3R_9587500_9588422 chr3R + chr3R_9586085_9587029;chr3R_9586085_9588422 chr3R_9586085_9586407 chr3R_9587030_9587536;chr3R_9588423_9590485 chr3R_9586408_9586663 chr3R_9586009_9586084 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K intron_retention Mtch,RI_chr3L_184729_185366,I_chr3L_185367_185925 chr3L + chr3L_184682_184774 chr3L_184681_184682;chr3L_184774_184775 chr3L_184674_184681;chr3L_184775_185000 70.97 83.33 63.64 78.12 47.06 64.71 70.00 75.00 51.11 66.67 55.00 65.85 50.00 60.71 54.29 70.97 63.64 70.00 69.57 68.89 52.38 87.50 95.45 85.71 83.33 64.00 92.86 90.00 96.00 80.00 74.29 55.56 76.92 56.10 92.31 93.75 83.33 85.00 75.00 70.00 68.42 55.32 54.55 76.47 48.15 75.76 93.33 63.64 63.83 91.67 80.56 76.47 92.31 100.00 52.78 92.31 100.00 64.71 K intron_retention CG15602 chrX + chrX_15693755_15693825 chrX_15693754_15693755;chrX_15693825_15693826 chrX_15693640_15693754;chrX_15693826_15694070 0.00 0.00 8.00 12.00 NA 0.00 8.00 8.70 0.00 NA 0.00 0.00 NA 0.00 0.00 8.70 NA 0.00 7.69 4.35 6.25 4.17 0.00 4.88 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.78 NA 0.00 0.00 0.00 0.00 10.53 0.00 NA 3.33 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 N alternative_acceptor CG7091,RI_chr3R_8805541_8805680,I_chr3R_8809774_8809832 chr3R + chr3R_8804251_8804598 chr3R_8804251_8804579 chr3R_8803691_8804250;chr3R_8804599_8804832 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 NA 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 21.43 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 2.56 NA 0.00 0.00 0.00 7.69 0.00 0.00 0.00 NA N intron_retention CG42394,noncoding_15936,E_chr3R_6675742_6676058 chr3R + chr3R_6677211_6677262 chr3R_6677210_6677211;chr3R_6677262_6677263 chr3R_6677007_6677210;chr3R_6677263_6677270 61.11 48.28 73.68 72.22 100.00 67.65 66.67 59.38 64.49 NA 38.89 70.31 33.33 64.81 52.38 62.04 59.18 56.52 55.41 66.67 NA NA 70.73 60.71 100.00 70.21 69.23 100.00 100.00 NA 61.36 59.52 58.06 68.42 62.50 100.00 58.82 57.14 100.00 57.69 78.57 64.91 66.67 58.14 61.11 52.86 50.00 50.00 69.23 60.87 56.25 56.00 55.56 66.67 50.00 53.33 59.18 52.78 K intron_retention hts,I_chr2R_15311185_15312327,I_chr2R_15311303_15311544,I_chr2R_15311303_15312026 chr2R - chr2R_15306111_15312327 chr2R_15306110_15306111;chr2R_15312327_15312328 chr2R_15306062_15306110;chr2R_15312328_15312346 10.00 NA NA NA NA NA 21.43 NA 10.00 NA NA NA NA NA NA 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention klett chrX - chrX_21497298_21497339 chrX_21497297_21497298;chrX_21497339_21497340 chrX_21496181_21497297;chrX_21497340_21497917 100.00 NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA 100.00 NA NA 88.89 NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA 100.00 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA K intron_retention CycG,I_chr3R_27427074_27427128,RE_chr3R_27427953_27436598 chr3R - chr3R_27427074_27427137 chr3R_27427073_27427074;chr3R_27427137_27427138 chr3R_27426974_27427073;chr3R_27427138_27427228 0.00 0.00 0.00 0.19 0.00 0.00 0.09 0.20 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.27 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.18 1.00 0.00 0.00 0.00 0.00 0.32 0.09 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.13 0.00 0.00 0.00 0.00 0.20 0.19 0.15 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Nacalpha,I_chr2R_8648027_8648303 chr2R - chr2R_8648027_8648309;chr2R_8648027_8648231 chr2R_8648027_8648305 chr2R_8647927_8648026;chr2R_8648310_8648314 21.98 10.00 27.27 33.33 29.41 42.86 30.00 33.33 12.50 NA 25.00 21.43 9.09 0.00 18.75 11.76 25.00 27.27 8.33 13.64 10.00 37.50 21.43 15.38 NA 17.65 22.22 78.12 22.22 44.44 18.75 28.57 33.33 16.67 14.29 NA 12.50 8.33 20.00 86.92 50.00 17.39 40.00 88.10 30.77 26.67 20.00 30.00 24.00 23.08 11.11 0.00 71.11 16.67 18.75 20.00 21.74 39.13 K intron_retention scaf6,EI_chr3L_17037760_17037808 chr3L - chr3L_17032731_17033237 chr3L_17032730_17032731;chr3L_17033237_17033238 chr3L_17032656_17032730;chr3L_17033238_17033310 20.00 13.33 41.67 7.41 NA NA 25.93 19.23 20.00 NA NA 28.00 NA 33.33 NA 39.39 NA NA 14.29 17.65 NA 41.67 0.00 NA NA NA 29.41 NA NA NA NA NA NA 33.33 14.29 15.38 NA NA NA 25.00 NA 15.38 25.00 NA NA NA NA NA 31.25 7.14 16.67 NA NA NA NA NA NA NA K intron_retention cwo,noncoding_15870 chr3R + chr3R_6223407_6223468 chr3R_6223406_6223407;chr3R_6223468_6223469 chr3R_6223089_6223406;chr3R_6223469_6226057 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 5.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.26 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9044 chr2L + chr2L_5949991_5950124 chr2L_5949990_5949991;chr2L_5950124_5950125 chr2L_5949835_5949990;chr2L_5950125_5951819 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 8.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3L_834336_834491,CG13887,Gr61a chr3L + chr3L_838625_839249 chr3L_838624_838625;chr3L_839249_839250 chr3L_838049_838624;chr3L_839250_839740 0.73 0.76 1.25 0.83 0.49 0.69 0.50 0.78 0.75 0.61 0.88 1.49 2.10 0.56 0.70 0.99 1.09 0.55 0.86 0.53 0.72 6.92 0.48 0.93 0.00 0.57 1.45 1.40 5.94 0.35 1.06 0.98 0.50 0.33 1.05 0.82 0.14 0.00 0.93 0.87 0.69 0.73 0.61 0.97 0.54 0.81 0.87 0.69 0.38 1.23 0.98 0.64 0.47 1.00 0.35 0.41 0.13 0.22 K jcn_only_AA CG8468 chr2R + chr2R_10107548_10108112;chr2R_10107548_10108091 chr2R_10107548_10114915 chr2R_10107405_10107547 0.00 0.00 0.00 1.98 0.00 0.63 0.00 0.00 0.29 0.00 0.00 0.00 0.00 1.12 0.62 0.41 0.00 1.84 0.00 0.00 0.00 0.60 0.00 0.65 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.60 0.00 0.28 0.00 0.55 1.25 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention sqd,I_chr3R_9462248_9471474,CR33328,I_chr3R_9468150_9468236,I_chr3R_9470417_9471474 chr3R - chr3R_9462248_9471474 chr3R_9462247_9462248;chr3R_9471474_9471475 chr3R_9462148_9462247;chr3R_9471475_9471574 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette Adar,I_chrX_1668256_1682696,I_chrX_1674594_1674717 chrX + chrX_1669772_1672644 chrX_1669772_1672405;chrX_1672594_1672644 chrX_1672406_1672593 chrX_1669733_1669771;chrX_1672645_1672732 48.48 46.15 35.29 20.00 54.55 42.86 61.11 53.33 48.48 NA 100.00 23.81 66.67 43.75 37.50 58.82 50.00 62.50 45.00 46.67 80.00 45.45 71.43 53.85 40.00 60.00 41.67 NA NA 36.36 43.75 NA 44.44 55.56 55.56 18.18 36.36 50.00 66.67 55.00 33.33 39.39 53.85 55.56 NA 38.46 NA 46.67 53.12 NA 54.55 83.33 NA NA 43.75 NA 66.67 30.77 K intron_retention CG6782,CG6783 chr3R - chr3R_7390434_7392639 chr3R_7390433_7390434;chr3R_7392639_7392640 chr3R_7390162_7390433;chr3R_7392640_7392746 0.78 0.54 0.60 0.80 0.00 0.34 1.83 0.30 0.70 1.89 2.26 0.48 0.00 0.00 0.61 0.00 0.00 0.62 0.00 0.32 0.48 1.34 1.91 1.78 1.08 0.87 1.34 4.51 2.33 2.45 0.36 0.73 1.67 0.49 0.78 3.53 1.45 1.53 0.22 3.01 0.93 0.20 0.00 0.91 0.59 1.74 1.83 0.71 0.63 1.95 3.06 1.52 1.56 1.51 0.00 0.88 0.71 0.26 K jcn_only_AD CG11658,I_chr3L_11704048_11704107 chr3L - chr3L_11700672_11701507;chr3L_11700672_11701407 chr3L_11700672_11701491 chr3L_11700405_11700671;chr3L_11701508_11701663 8.04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.54 NA NA NA 4.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor nct,I_chr3R_20679262_20679308 chr3R + chr3R_20679262_20679324;chr3R_20679262_20679308 chr3R_20679262_20679333 chr3R_20679193_20679261;chr3R_20679334_20679393 1.15 2.33 1.45 0.91 0.00 1.85 1.03 1.04 2.72 0.00 1.49 1.72 1.89 2.17 0.00 1.35 0.00 6.15 1.82 3.28 0.00 2.67 0.78 1.72 0.00 0.00 0.92 0.00 2.78 1.49 0.00 0.00 2.86 0.00 0.00 1.72 0.88 2.38 0.89 1.12 1.72 0.84 0.00 1.12 6.56 0.00 1.45 0.00 1.15 1.01 0.80 1.75 1.85 1.61 1.47 1.54 2.33 0.00 K intron_retention torp4a chrX - chrX_4543548_4543605 chrX_4543547_4543548;chrX_4543605_4543606 chrX_4542975_4543547;chrX_4543606_4544015 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2388436;chrX_2388671_2389073;chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2393243 chrX_2388437_2388670;chrX_2389074_2389271;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2393244_2393291 16.67 NA NA NA NA NA NA NA 16.67 NA NA 7.69 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 11.11 NA NA 6.67 NA 20.00 NA 16.67 NA NA NA 16.67 16.67 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG2875 chrX - chrX_3467334_3467400 chrX_3467337_3467400 chrX_3467401_3467615;chrX_3466628_3467333 90.91 84.62 91.67 80.00 NA 100.00 88.89 95.45 96.30 NA NA 100.00 90.91 88.89 91.67 90.91 90.00 90.91 100.00 96.30 NA NA 80.00 93.33 NA 88.89 100.00 100.00 NA 100.00 100.00 NA NA 90.48 NA NA 90.91 NA NA 90.00 NA 94.74 88.89 83.33 NA 88.89 84.62 88.89 84.62 66.67 93.75 100.00 88.89 NA 93.33 90.00 100.00 90.00 K jcn_only_AD CG4272 chr2L + chr2L_2365902_2366274;chr2L_2365391_2366274 chr2L_2365729_2366274 chr2L_2366275_2368213;chr2L_2365332_2365390 77.28 73.08 NA 79.49 76.19 NA 67.57 83.33 78.57 91.30 78.26 70.27 75.00 95.00 85.19 75.00 72.73 76.19 70.97 90.00 NA 54.17 77.08 77.42 NA 65.22 70.83 80.00 NA NA NA NA 78.57 76.00 86.36 71.43 82.86 86.67 90.00 80.95 NA 77.14 80.95 85.29 NA NA NA 76.92 70.97 84.00 76.19 85.19 NA NA 73.08 NA NA NA K jcn_only_AA CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042888_5043077;chr2L_5043017_5043077;chr2L_5042891_5043077 chr2L_5042885_5043077 chr2L_5043078_5043083 0.00 NA 0.00 3.12 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.55 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA NA 4.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA K intron_retention hrg chr2R - chr2R_15555984_15556622 chr2R_15555983_15555984;chr2R_15556622_15556623 chr2R_15555859_15555983;chr2R_15556623_15556651 6.67 NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG42588 chr3L + chr3L_12811626_12811700 chr3L_12811626_12811681 chr3L_12810479_12811625;chr3L_12811701_12812337 65.00 NA NA NA NA NA 68.00 60.00 64.52 NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA NA NA 62.50 NA NA NA NA NA NA 70.00 NA NA NA NA NA NA NA 65.00 NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG15715,RI_chr3L_15829349_15830356,I_chr3L_15830026_15830356,RI_chr3L_15830030_15830191,RI_chr3L_15830229_15830356 chr3L - chr3L_15830229_15830356;chr3L_15830030_15830356 chr3L_15830026_15830356 chr3L_15830357_15830456;chr3L_15830007_15830025 0.00 0.00 1.11 0.00 0.00 3.70 1.16 0.00 1.69 2.63 2.78 0.00 0.00 0.00 0.00 2.33 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 1.47 1.75 3.70 4.23 0.00 3.92 0.00 0.00 0.00 0.00 1.96 0.00 2.56 0.52 0.00 0.00 3.77 1.23 1.16 0.00 2.88 0.00 0.00 K intron_retention pan chr4 + chr4_106560_107642 chr4_106559_106560;chr4_107642_107643 chr4_106479_106559;chr4_107643_107792 0.00 0.00 5.13 4.71 0.00 0.00 3.85 0.00 2.61 0.00 2.78 2.60 5.56 0.00 2.56 2.94 0.00 0.00 3.92 0.00 0.00 10.00 1.89 0.00 0.00 0.00 0.00 0.00 12.00 0.00 0.00 NA 3.70 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 1.19 2.94 0.00 NA 0.00 NA 0.00 3.33 12.50 5.88 5.56 NA NA 2.00 15.38 NA 5.00 K alternative_last_exon CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_159201_159572;chr4_159201_160895 chr4_159201_160447 chr4_159573_159641;chr4_160896_162753 chr4_160448_160716 chr4_159000_159200 0.86 0.00 0.71 2.10 1.09 0.00 0.73 1.25 0.56 0.00 1.05 0.74 0.85 2.00 1.99 0.71 0.68 0.86 1.02 0.75 1.06 2.33 1.52 0.98 0.00 0.70 0.00 0.00 0.00 0.94 1.10 0.00 0.00 1.27 1.14 0.00 0.00 1.43 1.23 0.62 0.00 0.70 0.68 0.78 3.70 0.87 1.35 0.78 1.20 1.47 0.74 1.10 0.00 1.82 1.12 1.32 1.20 1.49 K intron_retention ATPsyn-Cf6,I_chr3R_19181508_19181563,I_chr3R_19181524_19181702 chr3R - chr3R_19181508_19181702 chr3R_19181507_19181508;chr3R_19181702_19181703 chr3R_19181424_19181507;chr3R_19181703_19181733 0.80 0.74 0.88 1.25 0.24 0.74 2.20 0.37 1.15 0.00 1.58 1.03 1.30 0.82 0.38 1.23 0.96 0.92 1.04 0.43 0.48 1.36 1.32 2.58 1.16 1.10 1.72 0.00 0.73 1.56 0.78 0.30 0.47 0.71 1.75 0.00 1.28 0.00 0.00 0.00 1.44 0.36 0.98 1.43 0.67 0.78 0.00 0.80 1.27 1.76 0.78 0.82 0.00 0.63 0.81 0.43 0.27 0.40 K alternative_acceptor CG10153,RI_chr2R_10644944_10645110 chr2R - chr2R_10644944_10645110 chr2R_10645056_10645110 chr2R_10645111_10645175;chr2R_10644844_10644943 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG7337,I_chr2L_1910010_1910066,I_chr2L_1938620_1938887,I_chr2L_1942183_1942233 chr2L + chr2L_1932148_1933805 chr2L_1932147_1932148;chr2L_1933805_1933806 chr2L_1932056_1932147;chr2L_1933806_1934049 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA K intron_retention unc-13,I_chr4_904268_904671,CRE_chr4_904268_906381,I_chr4_904268_919018,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_903989_904192 chr4_903988_903989;chr4_904192_904193 chr4_903802_903988;chr4_904193_904267 1.82 1.89 3.64 2.37 0.00 2.27 2.48 6.62 6.04 0.00 12.00 0.00 0.00 6.35 1.59 6.00 9.62 1.82 0.00 5.22 3.57 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 3.85 0.00 9.09 0.00 5.66 2.22 0.00 0.00 0.00 0.00 4.82 0.00 5.93 4.26 0.00 0.00 2.63 5.41 0.00 7.53 3.23 1.69 3.85 0.00 12.50 3.39 0.00 0.00 5.00 K intron_retention lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3964798_3965235 chr2R_3964797_3964798;chr2R_3965235_3965236 chr2R_3964765_3964797;chr2R_3965236_3966123 14.43 9.52 11.90 13.79 14.81 22.22 27.27 21.05 20.00 10.71 15.38 16.36 15.38 12.00 13.79 20.69 10.53 8.82 9.68 12.09 10.00 15.00 12.12 8.75 9.80 NA 12.73 24.39 18.75 18.18 16.67 20.51 19.51 15.79 13.51 10.00 6.17 10.00 6.67 17.65 17.14 12.07 21.05 18.42 15.15 18.37 14.04 22.73 16.28 15.15 10.96 10.00 16.33 12.50 11.43 12.90 12.07 31.82 K jcn_only_AA CG31224,Cpsf73 chr3R - chr3R_14486963_14487033 chr3R_14486971_14487033 chr3R_14487034_14487476;chr3R_14486843_14486962 100.00 100.00 97.73 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 98.61 NA 100.00 100.00 99.08 96.00 98.08 100.00 100.00 100.00 97.44 100.00 97.96 98.59 100.00 98.28 100.00 98.48 100.00 98.51 98.41 100.00 100.00 98.65 100.00 98.65 100.00 100.00 97.73 100.00 100.00 98.59 100.00 100.00 98.75 98.78 97.06 100.00 100.00 100.00 100.00 98.94 100.00 K intron_retention sar1,I_chr3R_18185148_18185246 chr3R + chr3R_18184214_18184284 chr3R_18184213_18184214;chr3R_18184284_18184285 chr3R_18184094_18184213;chr3R_18184285_18184350 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA wee chr2L - chr2L_6913282_6913425 chr2L_6913366_6913425 chr2L_6913426_6913993;chr2L_6912945_6913281 0.00 0.00 0.00 7.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Jafrac1,I_chrX_13223890_13225154,I_chrX_13224064_13225154,RI_chrX_13224713_13225154 chrX + chrX_13223890_13225154 chrX_13223889_13223890;chrX_13225154_13225155 chrX_13223790_13223889;chrX_13225155_13225254 89.44 NA NA 60.00 NA NA 88.89 56.25 NA NA 88.89 90.00 NA NA 50.00 NA NA NA NA 72.73 NA 100.00 NA 100.00 NA NA 100.00 91.67 100.00 NA NA NA 90.00 60.00 NA NA NA NA NA 75.00 92.31 66.67 NA NA 92.86 80.00 NA 100.00 61.54 NA NA NA NA NA NA NA NA 90.91 K alternative_donor Nacalpha,I_chr2R_8648027_8648303 chr2R - chr2R_8648027_8648305;chr2R_8648027_8648309 chr2R_8648027_8648231 chr2R_8647927_8648026;chr2R_8648310_8648314 52.75 80.00 45.45 58.33 23.53 42.86 60.00 33.33 62.50 NA 50.00 71.43 63.64 83.33 56.25 70.59 62.50 36.36 58.33 54.55 50.00 50.00 71.43 38.46 NA 47.06 66.67 9.38 66.67 55.56 62.50 57.14 41.67 50.00 57.14 NA 62.50 75.00 50.00 10.28 37.50 52.17 50.00 9.52 38.46 53.33 60.00 50.00 48.00 38.46 77.78 66.67 13.33 58.33 43.75 53.33 34.78 30.43 K intron_retention Rbcn-3A chrX - chrX_6136175_6136247 chrX_6136174_6136175;chrX_6136247_6136248 chrX_6136100_6136174;chrX_6136248_6136317 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Spn,I_chr3L_2511764_2512148 chr3L - chr3L_2510558_2511162 chr3L_2510576_2511162 chr3L_2511163_2511763;chr3L_2509762_2510557 100.00 100.00 NA 96.43 NA NA NA 96.00 98.11 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 97.37 100.00 100.00 NA 100.00 NA 95.24 NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 97.67 NA 100.00 NA 100.00 100.00 90.48 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA NA K alternative_donor CG8788,I_chr2R_5026774_5026825,RI_chr2R_5026774_5026866,RI_chr2R_5026774_5028942,RI_chr2R_5033951_5034150,I_chr2R_5036518_5036570 chr2R + chr2R_5026774_5027484 chr2R_5026778_5027484 chr2R_5027485_5027803;chr2R_5026674_5026773 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K intron_retention CG13373,CG32817 chrX + chrX_371325_371639 chrX_371324_371325;chrX_371639_371640 chrX_371035_371324;chrX_371640_371964 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 4.55 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 25.00 0.00 NA K alternative_acceptor Hr78,I_chr3L_21490089_21490390,CG33214 chr3L - chr3L_21490008_21490390;chr3L_21489978_21490390;chr3L_21490023_21490390 chr3L_21490089_21490390 chr3L_21490391_21490490;chr3L_21489920_21489977 0.00 NA NA 15.00 NA 0.00 0.00 0.00 0.00 NA 0.00 7.69 9.09 9.09 0.00 0.00 NA 0.00 10.00 0.00 NA NA 10.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 8.33 NA NA NA NA NA 0.00 NA 0.00 10.00 16.67 NA NA NA NA 0.00 NA 0.00 0.00 NA NA 7.69 NA NA NA K cassette Msp-300,I_chr2L_5185965_5188116,I_chr2L_5197634_5197866 chr2L + chr2L_5155850_5188116;chr2L_5185965_5188116 chr2L_5185965_5187606,chr2L_5155850_5187606;chr2L_5187718_5188116 chr2L_5187607_5187717 chr2L_5155589_5155849;chr2L_5188117_5188216 100.00 100.00 100.00 97.96 95.45 100.00 96.43 98.31 98.92 95.83 100.00 98.33 100.00 100.00 96.97 100.00 96.88 100.00 100.00 100.00 100.00 91.30 100.00 93.75 100.00 88.89 100.00 100.00 100.00 100.00 96.77 NA 100.00 98.18 100.00 94.44 97.50 100.00 95.00 95.45 NA 98.21 100.00 95.24 NA NA 100.00 100.00 96.55 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 K intron_retention par-1,I_chr2R_15359242_15360944,I_chr2R_15359251_15359544,I_chr2R_15359251_15360944,I_chr2R_15359658_15359771,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15359242_15360323 chr2R_15359241_15359242;chr2R_15360323_15360324 chr2R_15359151_15359241;chr2R_15360324_15360436 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21308996_21309579;chr2L_21309019_21309579;chr2L_21309084_21309579 chr2L_21309092_21309579 chr2L_21309580_21309679;chr2L_21308992_21308995 64.59 NA NA 75.00 NA NA 42.86 62.50 62.50 NA NA NA NA NA NA 53.85 33.33 NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA 71.43 NA NA NA 75.00 NA 72.73 80.00 NA NA NA NA NA NA NA NA NA K intron_retention CG34123,RI_chr2R_11160894_11162043,I_chr2R_11167854_11168411 chr2R - chr2R_11165283_11165391 chr2R_11165282_11165283;chr2R_11165391_11165392 chr2R_11165181_11165282;chr2R_11165392_11165548 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 3.70 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 13.79 0.00 0.00 NA 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AA ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13411752_13411852 chr2R_13411788_13411852 chr2R_13411853_13412089;chr2R_13411589_13411751 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor mthl5 chr3R - chr3R_7710606_7710663 chr3R_7710609_7710663 chr3R_7710664_7710845;chr3R_7710105_7710605 9.52 NA 7.14 11.76 NA 12.50 4.55 5.26 15.15 NA NA 18.75 NA 7.69 14.29 14.29 0.00 NA 0.00 2.94 NA 0.00 10.34 5.26 NA 7.69 12.50 NA NA 6.25 NA NA NA 6.67 21.43 6.25 5.56 17.65 4.76 13.33 NA 13.04 21.43 9.52 NA 10.71 17.65 NA 13.79 7.14 6.90 4.76 NA 10.53 9.52 12.50 5.26 NA K jcn_only_AA Ance,Ance-2 chr2L + chr2L_13905719_13906565 chr2L_13905719_13906460 chr2L_13905672_13905718;chr2L_13906566_13907172 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA K jcn_only_AD Pak,RI_chr3R_2181143_2181934 chr3R + chr3R_2179971_2180635 chr3R_2179973_2180635 chr3R_2180636_2180902;chr3R_2179902_2179970 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA K intron_retention CG11095 chrX + chrX_13706079_13706144 chrX_13706078_13706079;chrX_13706144_13706145 chrX_13705693_13706078;chrX_13706145_13707067 14.29 NA 7.14 NA NA NA NA 21.05 17.65 NA NA 14.29 NA NA 22.22 NA NA NA NA 7.41 7.69 25.00 NA 11.11 NA NA 15.79 NA 5.56 NA 33.33 10.53 14.29 17.39 NA NA 4.17 0.00 13.64 13.89 11.76 9.68 16.67 NA 7.41 27.27 NA 23.33 10.71 26.32 25.00 NA NA 20.00 NA 26.32 NA 14.29 K intron_retention CG11880,I_chr3R_24949827_24951052,CE_chr3R_24962426_24962797 chr3R + chr3R_24949202_24949522 chr3R_24949201_24949202;chr3R_24949522_24949523 chr3R_24949179_24949201;chr3R_24949523_24949826 0.00 0.00 0.00 8.82 3.23 0.00 2.27 2.44 0.00 0.00 0.00 2.22 0.00 0.00 0.00 2.63 0.00 0.00 5.00 6.38 0.00 3.85 0.00 0.00 0.00 4.08 4.55 0.00 6.67 NA 0.00 0.00 0.00 2.70 0.00 9.09 0.00 NA 4.17 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 NA 0.00 0.00 NA 0.00 K alternative_acceptor coro,I_chr2R_2754447_2755071 chr2R - chr2R_2751039_2751782 chr2R_2751060_2751782 chr2R_2751783_2752076;chr2R_2750853_2751038 1.64 2.92 2.26 1.54 1.98 1.64 2.34 1.33 1.83 0.00 1.18 0.97 1.15 0.00 2.17 0.84 1.41 1.02 0.93 2.67 1.00 14.67 1.65 2.26 1.65 0.00 2.59 0.00 0.93 1.89 1.45 1.19 2.13 1.14 1.57 2.42 1.94 2.23 1.79 1.06 2.20 2.26 1.27 1.64 0.72 1.85 1.96 1.52 1.69 2.45 2.33 1.01 0.00 2.03 1.35 2.72 1.61 0.00 K cassette CG3632,RI_chrX_16195880_16196242 chrX + chrX_16195951_16196939 chrX_16195951_16196242;chrX_16196446_16196939 chrX_16196243_16196445 chrX_16195846_16195950;chrX_16196940_16197282 91.11 88.24 97.30 79.07 91.67 96.77 91.11 83.58 92.31 80.00 95.24 92.00 87.88 86.11 91.67 93.88 100.00 93.55 97.30 87.01 95.45 88.24 90.91 90.70 72.00 82.05 91.67 84.00 96.55 92.00 97.56 88.89 96.15 91.53 85.00 74.07 89.19 87.50 87.50 92.86 83.33 87.34 88.24 97.30 97.44 95.65 97.50 88.24 89.86 87.76 93.48 85.19 89.29 86.21 91.49 92.86 95.65 95.35 K alternative_donor sxc,I_chr2R_1203985_1205289,I_chr2R_1208121_1213310,I_chr2R_1213177_1213308 chr2R + chr2R_1194785_1194918 chr2R_1194858_1194918 chr2R_1194919_1195157;chr2R_1194775_1194784 69.23 NA NA 87.50 NA NA 84.21 85.71 57.14 NA NA NA 69.23 NA NA 45.45 NA NA 62.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 55.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 70.00 NA NA NA NA NA NA NA NA NA K intron_retention sty chr3L - chr3L_3404922_3416803 chr3L_3404921_3404922;chr3L_3416803_3416804 chr3L_3401145_3404921;chr3L_3416804_3417995 0.00 0.29 0.00 0.60 0.00 0.66 0.00 0.70 0.38 0.00 0.00 0.31 0.91 0.65 0.22 0.69 0.00 0.00 0.44 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.55 0.50 0.33 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 K intron_retention mav,RI_chr4_645290_646129 chr4 - chr4_645290_645397 chr4_645289_645290;chr4_645397_645398 chr4_645190_645289;chr4_645398_645533 1.25 NA 0.00 6.67 NA NA 12.50 0.00 6.12 NA NA 3.57 0.00 0.00 NA 6.67 NA NA 3.23 2.56 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 9.76 0.00 6.67 NA NA NA 5.88 NA 2.50 0.00 NA NA 0.00 NA 0.00 4.44 NA 0.00 NA NA NA 0.00 NA NA 0.00 K intron_retention CG7530,I_chr3R_10556352_10557136,eff chr3R - chr3R_10556352_10557148 chr3R_10556351_10556352;chr3R_10557148_10557149 chr3R_10556252_10556351;chr3R_10557149_10557231 95.90 100.00 100.00 86.96 95.24 92.31 100.00 97.14 100.00 100.00 100.00 95.24 95.00 94.44 89.66 96.67 100.00 96.88 90.48 93.22 94.74 NA 92.86 100.00 92.86 100.00 95.00 100.00 90.91 100.00 95.65 94.44 89.66 96.55 100.00 100.00 93.75 85.71 91.67 96.61 100.00 97.44 93.75 85.71 100.00 97.37 92.31 98.04 91.49 100.00 100.00 100.00 91.18 90.00 96.15 81.82 100.00 94.92 K intron_retention La chr2L - chr2L_20348879_20348949 chr2L_20348878_20348879;chr2L_20348949_20348950 chr2L_20348704_20348878;chr2L_20348950_20349929 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention bor chr3R - chr3R_12089344_12089451 chr3R_12089343_12089344;chr3R_12089451_12089452 chr3R_12088869_12089343;chr3R_12089452_12089738 0.00 0.00 1.37 0.00 0.00 0.00 0.00 2.99 0.00 0.00 0.00 1.44 0.00 0.00 0.00 0.00 0.00 2.99 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.55 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.48 0.00 1.11 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N multi_cassette msn,I_chr3L_2558033_2560115,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2558390_2563817 chr3L_2558390_2560115;chr3L_2560296_2561931;chr3L_2562844_2563817 chr3L_2560116_2560295;chr3L_2561932_2562843 chr3L_2558293_2558389;chr3L_2563818_2563917 100.00 75.00 100.00 70.27 60.00 100.00 79.31 100.00 73.77 100.00 100.00 89.71 23.08 100.00 70.83 100.00 100.00 46.67 100.00 100.00 100.00 37.62 81.40 86.15 100.00 100.00 82.69 61.90 89.47 85.25 100.00 100.00 100.00 100.00 81.63 100.00 82.02 100.00 81.82 92.31 82.61 100.00 100.00 83.72 77.36 100.00 100.00 90.62 100.00 100.00 85.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG4169,CG32163 chr3L + chr3L_16578183_16578284 chr3L_16578182_16578183;chr3L_16578284_16578285 chr3L_16577879_16578182;chr3L_16578285_16579256 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA iPLA2-VIA chr3L - chr3L_9856717_9857292;chr3L_9857015_9857292 chr3L_9857200_9857292 chr3L_9857293_9857459 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD su(s) chrX + chrX_535224_535329 chrX_535236_535329 chrX_535330_537684;chrX_535111_535223 100.00 100.00 100.00 97.78 100.00 100.00 95.00 100.00 98.84 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 94.29 100.00 93.10 100.00 100.00 97.92 100.00 95.45 100.00 100.00 96.83 100.00 100.00 97.56 100.00 98.33 100.00 96.97 100.00 100.00 100.00 100.00 95.45 88.89 100.00 NA 98.08 100.00 100.00 97.06 K intron_retention I_chr2R_13460029_13460240,Dcr-2,I_chr2R_13466001_13466061,I_chr2R_13466001_13466072 chr2R - chr2R_13466001_13466072 chr2R_13466000_13466001;chr2R_13466072_13466073 chr2R_13465901_13466000;chr2R_13466073_13466161 77.12 NA 93.75 75.00 NA NA 70.59 91.67 94.44 NA NA 90.91 NA NA 100.00 76.47 75.00 87.50 90.91 83.33 NA NA NA 66.67 NA 75.00 66.67 77.78 NA NA 76.19 NA NA 100.00 NA NA NA NA NA 60.00 NA 66.67 NA NA NA NA NA NA 92.31 NA NA NA NA NA 75.00 NA NA NA K intron_retention Rbf chrX - chrX_694099_694160 chrX_694098_694099;chrX_694160_694161 chrX_693744_694098;chrX_694161_694349 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ird5,I_chr3R_11874883_11874942,CG10185 chr3R - chr3R_11874534_11874942 chr3R_11874533_11874534;chr3R_11874942_11874943 chr3R_11873964_11874533;chr3R_11874943_11875042 3.92 0.00 0.00 17.14 0.00 0.00 10.53 0.00 4.35 0.00 0.00 2.33 7.69 0.00 0.00 6.06 0.00 0.00 4.76 3.92 3.57 29.03 3.92 3.03 15.38 6.25 6.90 7.69 8.33 9.52 0.00 10.53 3.45 1.92 8.33 8.70 7.14 0.00 3.12 3.92 4.76 5.80 0.00 6.25 0.00 6.67 0.00 8.33 3.33 9.52 4.55 7.14 0.00 0.00 6.06 6.67 0.00 9.09 K jcn_only_AD CREF_chr3R_5589662_5589762,CG8481 chr3R + chr3R_5594185_5594466;chr3R_5593863_5594466 chr3R_5594297_5594466 chr3R_5594467_5594493;chr3R_5593583_5593862 44.16 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 63.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG11771 chr3R + chr3R_20757959_20758015 chr3R_20757963_20758015 chr3R_20758016_20760641;chr3R_20757811_20757958 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.56 NA 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 K intron_retention Nopp140,I_chr3L_21828330_21828566,I_chr3L_21828986_21829082 chr3L + chr3L_21827930_21828170 chr3L_21827929_21827930;chr3L_21828170_21828171 chr3L_21827465_21827929;chr3L_21828171_21828185 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 5.36 0.00 3.85 0.00 0.00 0.00 0.00 0.00 2.41 0.00 NA 3.92 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 4.65 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 1.54 2.44 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9795,EI_chr3R_145575_147566,RI_chr3R_145613_145675 chr3R + chr3R_145613_147566 chr3R_145612_145613;chr3R_147566_147567 chr3R_145513_145612;chr3R_147567_147666 52.56 55.10 52.38 46.81 69.57 48.84 63.49 47.06 53.19 36.84 81.82 52.56 60.47 58.82 54.55 46.81 55.00 79.63 52.27 63.41 80.39 50.00 43.08 47.54 48.48 60.00 52.17 67.86 71.88 55.56 56.00 57.50 39.13 51.47 59.46 55.56 44.74 42.50 50.68 44.44 76.47 47.47 51.28 34.38 69.44 61.54 59.62 41.67 40.23 39.29 37.88 50.00 39.62 71.43 49.06 61.36 70.42 58.33 K intron_retention CG8547 chr2R - chr2R_10149426_10149484 chr2R_10149425_10149426;chr2R_10149484_10149485 chr2R_10148716_10149425;chr2R_10149485_10149676 0.00 0.00 NA NA NA NA NA NA 4.17 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA 15.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 NA 0.00 0.00 0.00 0.00 6.67 0.00 0.00 4.76 NA 0.00 0.00 NA 0.00 0.00 NA N cassette Dscam,F_chr2R_3219886_3228832,F_chr2R_3226043_3235353,F_chr2R_3227948_3235353,F_chr2R_3228738_3235353,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3219886_3235353 chr2R_3219886_3233380;chr2R_3233672_3235353 chr2R_3233381_3233671 chr2R_3219786_3219885;chr2R_3235354_3235453 100.00 36.36 41.67 30.00 NA 100.00 55.56 45.83 100.00 100.00 NA 100.00 37.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 18.92 100.00 100.00 100.00 100.00 100.00 100.00 30.77 100.00 100.00 NA 36.00 100.00 100.00 100.00 100.00 NA 100.00 42.86 NA 100.00 100.00 100.00 NA NA NA 100.00 57.89 NA 29.41 100.00 NA NA 55.56 NA NA NA K mutually_exclusive CG31243,CG42457 chr3R + chr3R_13836297_13837817,chr3R_13837873_13838869 chr3R_13836297_13836818,chr3R_13837436_13838869 chr3R_13837818_13837872 chr3R_13836819_13837435 chr3R_13836063_13836296;chr3R_13838870_13839405 16.67 28.57 16.67 NA NA NA 16.67 14.29 26.32 NA NA 23.08 NA NA 12.50 11.11 20.00 0.00 14.29 5.88 NA 12.50 10.00 16.67 NA 20.00 22.22 NA 33.33 16.67 12.50 NA 33.33 12.50 14.29 28.57 15.38 20.00 21.43 14.29 16.67 20.00 20.00 28.57 40.00 25.00 20.00 40.00 12.50 16.67 14.29 25.00 16.67 NA 10.00 NA NA 11.11 K intron_retention JhI-21,I_chr2L_12055360_12055714 chr2L - chr2L_12052504_12052559 chr2L_12052503_12052504;chr2L_12052559_12052560 chr2L_12051752_12052503;chr2L_12052560_12052684 0.25 0.74 0.48 1.02 0.31 0.87 0.00 0.00 0.81 0.00 0.30 0.59 0.00 0.00 0.00 1.32 0.70 0.58 0.00 0.77 0.52 0.50 0.00 0.54 0.00 0.00 0.92 2.66 0.00 0.00 0.00 0.00 0.34 0.38 0.00 0.00 0.30 0.00 0.67 1.10 0.00 0.62 0.38 0.25 0.34 0.00 0.00 0.00 1.07 0.45 0.00 0.00 0.00 0.22 0.52 0.25 0.00 0.00 K jcn_only_AA Atox1,R_chr3L_21634285_21634386,RI_chr3L_21634463_21635078 chr3L + chr3L_21634463_21635078 chr3L_21634463_21635073 chr3L_21634387_21634462;chr3L_21635079_21635178 100.00 100.00 98.31 100.00 100.00 100.00 97.83 97.92 98.82 98.33 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 98.59 98.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.73 100.00 98.36 97.87 100.00 98.55 95.92 98.78 100.00 97.22 100.00 100.00 100.00 98.75 99.04 98.67 98.75 98.85 100.00 100.00 100.00 100.00 100.00 100.00 96.43 98.45 99.59 K alternative_donor Gpo-1,I_chr2R_11747621_11747699,EI_chr2R_11747445_11747699,I_chr2R_11749758_11750187,I_chr2R_11756325_11756380 chr2R - chr2R_11748259_11750201 chr2R_11748259_11750187 chr2R_11748106_11748258;chr2R_11750202_11750219 100.00 100.00 100.00 100.00 NA 100.00 100.00 92.86 94.74 100.00 100.00 100.00 90.00 100.00 88.89 94.44 100.00 NA 100.00 100.00 100.00 95.45 100.00 96.00 100.00 90.00 96.15 94.12 93.75 100.00 93.33 94.44 100.00 93.33 100.00 95.00 100.00 100.00 100.00 97.67 95.00 94.12 NA 100.00 96.43 100.00 100.00 96.15 95.65 100.00 97.87 100.00 88.89 100.00 100.00 100.00 NA 100.00 K intron_retention jim,I_chr3L_22791582_22791898 chr3L - chr3L_22792549_22793124 chr3L_22792548_22792549;chr3L_22793124_22793125 chr3L_22792351_22792548;chr3L_22793125_22793884 76.47 63.64 76.92 59.38 86.67 83.33 83.33 73.33 72.00 NA 70.00 71.43 90.00 63.64 76.47 NA 70.00 57.14 80.00 69.57 77.78 76.47 65.71 86.21 69.23 76.92 71.43 90.00 69.23 58.33 76.92 NA NA 61.11 84.62 80.00 71.43 73.08 80.77 79.17 NA 81.82 NA 92.31 NA 63.64 88.89 76.92 85.00 71.43 72.22 71.43 NA 63.64 77.78 83.33 90.00 80.00 K intron_retention l(3)mbt,noncoding_19527,I_chr3R_23096096_23096561 chr3R - chr3R_23095096_23095153 chr3R_23095095_23095096;chr3R_23095153_23095154 chr3R_23094927_23095095;chr3R_23095154_23095427 98.18 100.00 100.00 98.11 100.00 100.00 97.92 94.55 98.46 95.45 100.00 98.18 95.65 100.00 100.00 98.39 100.00 93.75 97.73 98.33 96.67 100.00 97.06 97.56 100.00 100.00 93.55 100.00 97.62 100.00 97.44 96.97 100.00 100.00 96.97 100.00 97.62 91.30 97.30 93.94 97.96 100.00 100.00 100.00 100.00 98.15 96.67 96.77 98.51 96.15 95.56 96.00 100.00 95.24 100.00 96.97 100.00 98.78 K cassette plexA,RI_chr4_1036247_1047588,RI_chr4_1040642_1047395,RI_chr4_1044307_1046841,RF_chr4_1044307_1047399 chr4 - chr4_1040642_1046841;chr4_1036247_1047588;chr4_1040642_1047395;chr4_1040642_1047588;chr4_1040642_1047399 chr4_1040642_1042867,chr4_1036247_1042867;chr4_1044307_1046841,chr4_1044307_1047395,chr4_1044307_1047588,chr4_1044307_1047399 chr4_1042868_1044306 chr4_1036147_1036246;chr4_1047589_1047625 100.00 100.00 100.00 100.00 100.00 100.00 99.41 99.42 99.49 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 98.57 97.44 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.48 91.67 100.00 100.00 98.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG33129,I_chr2L_10966410_10967142,noncoding_2515,I_chr2L_10966622_10967108 chr2L - chr2L_10966622_10968104;chr2L_10966622_10968133;chr2L_10966622_10967855 chr2L_10966622_10968083 chr2L_10966522_10966621;chr2L_10968134_10968152 0.00 0.00 2.27 1.16 0.00 0.00 2.50 1.25 0.76 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 1.16 NA 0.00 0.00 NA NA 0.00 0.00 0.93 0.00 NA 0.00 0.00 NA 0.00 0.86 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 K alternative_donor CG32795,I_chrX_2677459_2682526,I_chrX_2677729_2677799,I_chrX_2679163_2681784 chrX - chrX_2683412_2683778 chrX_2683412_2683741 chrX_2683271_2683411;chrX_2683779_2683818 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_donor lig,CI_chr2R_3962006_3962916,I_chr2R_3962357_3962977,RI_chr2R_3962875_3962977 chr2R + chr2R_3961577_3962977;chr2R_3962006_3962977 chr2R_3961910_3962977 chr2R_3962978_3963016;chr2R_3961479_3961576 2.51 4.23 1.76 3.75 5.17 3.26 1.69 1.55 3.74 5.10 2.48 4.84 3.21 3.57 3.36 0.53 1.05 1.03 1.04 0.52 4.19 2.47 2.76 3.74 3.61 1.90 5.70 22.92 9.46 3.62 1.02 3.86 1.00 2.36 1.01 4.60 2.58 3.12 1.95 3.57 3.17 1.64 1.20 1.90 3.63 1.77 1.07 2.91 1.88 0.95 2.13 1.43 2.85 1.58 2.51 2.99 2.28 2.05 K intron_retention crq,I_chr2L_452169_452576,I_chr2L_452737_452797 chr2L - chr2L_450879_452576 chr2L_450878_450879;chr2L_452576_452577 chr2L_450666_450878;chr2L_452577_452676 0.00 0.00 1.32 1.80 0.00 0.00 1.79 0.00 1.82 4.55 0.00 0.00 6.06 0.00 0.00 2.35 0.00 0.00 0.00 0.70 0.00 1.61 2.27 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 1.43 0.00 2.70 6.25 0.00 0.00 2.78 0.00 1.63 0.00 0.00 0.00 0.00 0.00 0.00 1.99 0.00 0.00 2.70 NA 2.86 0.00 4.17 0.00 4.26 K jcn_only_AD CG6006 chr3R + chr3R_11984096_11984579;chr3R_11983962_11984579;chr3R_11984036_11984579;chr3R_11984029_11984579 chr3R_11984018_11984579 chr3R_11984580_11984637;chr3R_11983945_11983961 36.73 NA NA NA NA NA 22.73 NA 38.46 NA NA NA NA NA NA NA NA NA NA NA NA NA 30.00 NA NA NA 20.83 NA NA NA NA NA NA 40.91 NA NA NA NA NA NA NA 35.00 NA NA NA NA NA NA 58.06 NA 47.83 NA NA NA NA NA NA NA K intron_retention itp chr2R + chr2R_20428544_20442876 chr2R_20428543_20428544;chr2R_20442876_20442877 chr2R_20427495_20428543;chr2R_20442877_20443094 0.00 0.00 3.92 3.23 3.92 0.00 11.11 3.80 6.42 0.00 0.00 3.23 4.76 4.26 4.00 0.00 6.25 7.14 1.72 5.06 2.27 0.00 1.67 0.00 0.00 4.44 0.00 0.00 0.00 0.00 4.44 0.00 0.00 6.17 2.56 0.00 0.00 0.00 0.00 0.00 0.00 3.33 5.41 0.00 0.00 0.00 0.00 0.00 3.61 0.00 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 K alternative_donor I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545781_17545855;chr2R_17545686_17545855;chr2R_17545615_17545855 chr2R_17545799_17545855 chr2R_17545856_17545985;chr2R_17545613_17545614 0.00 10.00 0.00 3.70 0.00 0.00 0.00 0.00 4.55 16.67 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 8.33 0.00 0.00 12.50 0.00 0.00 20.00 7.69 20.00 25.00 0.00 0.00 0.00 12.50 11.11 4.35 NA NA 0.00 0.00 0.00 7.69 12.50 2.38 0.00 20.00 4.76 0.00 0.00 18.18 0.00 25.00 0.00 25.00 0.00 0.00 4.17 10.00 0.00 8.33 K intron_retention CG5013,I_chr3R_11877071_11877796 chr3R + chr3R_11875438_11875509 chr3R_11875437_11875438;chr3R_11875509_11875510 chr3R_11875435_11875437;chr3R_11875510_11875638 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 K intron_retention CG32529 chrX + chrX_19798711_19798771 chrX_19798710_19798711;chrX_19798771_19798772 chrX_19798542_19798710;chrX_19798772_19799645 1.26 0.82 1.45 4.98 0.83 1.05 2.33 1.23 1.50 1.07 1.38 1.33 0.44 0.00 1.81 1.95 1.68 1.38 1.71 1.35 2.86 2.08 1.41 0.57 3.24 3.72 3.35 4.68 16.07 1.20 1.15 0.00 3.50 1.88 0.81 3.99 1.23 1.04 0.86 1.22 4.84 1.12 3.35 0.99 1.72 0.86 0.82 3.70 0.98 1.26 0.87 1.29 0.87 0.79 1.06 0.36 0.00 0.00 K alternative_donor CG8177,E_chr3L_9756800_9772650,RI_chr3L_9757294_9758708,I_chr3L_9773534_9773635,I_chr3L_9774319_9774602 chr3L + chr3L_9756800_9764754 chr3L_9757294_9764754 chr3L_9764755_9765019;chr3L_9756700_9756799 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG2906 chr2R + chr2R_3844342_3844402 chr2R_3844346_3844402 chr2R_3844403_3845220;chr2R_3844148_3844341 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor I_chr2L_822032_822857,dock chr2L + chr2L_826508_829304;chr2L_826508_829456 chr2L_826508_829421 chr2L_826008_826507;chr2L_829457_829468 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Eph,I_chr4_636808_638946,I_chr4_639690_640473,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_636808_638973 chr4_636808_637929;chr4_637978_638973 chr4_637930_637977 chr4_636708_636807;chr4_638974_639046 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Df31,RE_chr2L_21628206_21629662,I_chr2L_21628206_21629666,I_chr2L_21628210_21628944,I_chr2L_21628210_21629216,EI_chr2L_21628210_21629715,REI_chr2L_21628210_21629884,I_chr2L_21628224_21629666,I_chr2L_21628734_21629666 chr2L - chr2L_21628210_21629666 chr2L_21628734_21629666 chr2L_21629667_21629762;chr2L_21628124_21628209 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.08 0.00 0.00 0.29 0.00 0.00 0.05 0.00 0.16 0.00 0.10 0.00 0.00 0.00 0.06 0.00 0.08 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.09 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 K intron_retention CG14995,I_chr3L_4095875_4097205,I_chr3L_4096047_4096903 chr3L - chr3L_4096979_4097506 chr3L_4096978_4096979;chr3L_4097506_4097507 chr3L_4096971_4096978;chr3L_4097507_4097804 16.52 NA NA NA NA NA NA NA 35.71 NA NA NA NA NA NA NA NA NA NA 15.38 NA 42.86 0.00 11.11 NA NA NA NA 0.00 NA NA NA 9.09 NA NA NA 6.45 13.04 22.22 20.00 NA 22.22 NA 17.65 7.69 NA NA 7.14 25.00 38.46 25.00 NA NA NA NA NA NA NA K alternative_last_exon MRP,I_chr2L_12727117_12729243,F_chr2L_12727117_12736035 chr2L + chr2L_12728242_12737958 chr2L_12728242_12729930 chr2L_12737959_12738176 chr2L_12729931_12730151 chr2L_12728173_12728241 0.98 0.81 0.91 1.18 2.00 1.82 0.41 1.34 0.78 1.59 7.50 1.37 0.90 1.05 0.98 0.55 1.28 0.78 0.76 1.63 2.08 0.83 1.85 1.61 0.83 1.22 0.58 1.39 1.79 1.00 0.81 1.22 0.92 0.62 0.86 1.60 0.87 2.38 0.51 1.52 0.94 0.56 1.52 0.44 1.08 0.79 0.97 1.19 1.97 1.11 0.50 0.98 0.78 2.19 1.69 0.86 0.40 0.67 K jcn_only_AA Zyx102EF,I_chr4_1078380_1078835,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1078666_1078835;chr4_1078644_1078835;chr4_1078778_1078835 chr4_1078782_1078835 chr4_1078836_1078848;chr4_1078433_1078643 34.48 NA NA 16.67 NA NA 45.00 15.79 36.00 NA NA 33.33 NA NA NA 22.73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.91 NA NA 34.48 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 37.14 NA NA NA NA NA NA NA NA NA K intron_retention Nmda1,R_chr2R_8766216_8766562,I_chr2R_8766652_8766956,I_chr2R_8766728_8766791,I_chr2R_8766728_8767623 chr2R - chr2R_8766652_8766952 chr2R_8766651_8766652;chr2R_8766952_8766953 chr2R_8766628_8766651;chr2R_8766953_8767161 60.00 NA 53.85 NA NA NA 69.23 53.33 53.33 NA NA 47.06 60.00 77.78 63.64 61.11 NA 55.56 NA 40.00 NA NA 50.00 NA NA NA 90.00 94.12 92.86 NA 54.55 NA NA 56.25 NA NA NA NA NA NA NA 33.33 NA 70.00 NA NA NA NA 68.75 NA NA NA NA NA 70.00 NA NA NA K cassette Dyb,I_chr2R_8337305_8339173,I_chr2R_8337742_8339173,I_chr2R_8338101_8339173,I_chr2R_8348603_8351844 chr2R + chr2R_8337288_8339479 chr2R_8337288_8337573;chr2R_8337742_8339479 chr2R_8337574_8337741 chr2R_8337205_8337287;chr2R_8339480_8339530 0.00 4.76 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 3.45 NA NA NA 0.00 NA NA NA 6.90 NA NA 0.00 0.00 0.00 NA 4.55 NA NA 0.00 NA NA NA 0.00 0.00 0.00 4.00 4.35 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA K intron_retention rtGEF,I_chr2L_20359856_20360012 chr2L + chr2L_20360813_20364296 chr2L_20360812_20360813;chr2L_20364296_20364297 chr2L_20360564_20360812;chr2L_20364297_20365220 6.60 8.54 1.72 33.33 6.98 7.27 22.03 10.53 4.59 7.25 14.58 10.84 11.76 9.52 9.38 9.76 4.76 4.05 4.35 7.63 8.33 2.55 5.31 3.51 6.00 7.55 6.02 9.86 7.14 4.90 4.17 5.41 7.22 5.41 5.88 3.09 4.43 6.17 3.15 5.11 15.18 7.87 8.33 5.13 3.93 7.58 7.41 5.56 6.60 10.34 7.92 5.66 5.33 2.60 5.36 9.30 7.45 6.00 K intron_retention Pfk,I_chr2R_5999081_6000140,E_chr2R_6001157_6001630 chr2R + chr2R_6001157_6002421 chr2R_6001156_6001157;chr2R_6002421_6002422 chr2R_6001129_6001156;chr2R_6002422_6002610 8.11 8.51 14.81 0.00 NA 5.26 18.92 15.00 11.11 6.98 11.11 11.11 NA NA NA NA NA 3.45 NA 0.00 10.53 5.06 8.47 9.23 6.25 NA 9.23 12.50 10.94 10.00 0.00 0.00 9.38 18.18 0.00 8.11 8.99 5.00 2.60 16.28 0.00 9.09 NA 5.26 0.00 2.38 0.00 14.29 4.00 8.70 10.42 19.35 0.00 8.11 NA 2.70 0.00 0.00 K multi_cassette unk,I_chr3R_18980963_18981530 chr3R - chr3R_18980497_18981530 chr3R_18980497_18980566;chr3R_18980690_18980853;chr3R_18980963_18981161;chr3R_18981272_18981530 chr3R_18980567_18980689;chr3R_18980854_18980962;chr3R_18981162_18981271 chr3R_18979916_18980496;chr3R_18981531_18981630 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 66.67 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389272_2395659 chrX_2389272_2390808;chrX_2390959_2391350;chrX_2391522_2393243;chrX_2393712_2395659 chrX_2390809_2390958;chrX_2391351_2391521;chrX_2393244_2393711 chrX_2389172_2389271;chrX_2395660_2395759 50.00 NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CtBP chr3R + chr3R_8847365_8850521 chr3R_8847364_8847365;chr3R_8850521_8850522 chr3R_8847142_8847364;chr3R_8850522_8850528 88.46 82.35 80.00 88.89 92.31 93.33 93.75 84.00 89.47 81.82 100.00 79.41 88.89 93.33 100.00 94.44 100.00 85.71 93.33 80.77 92.31 84.31 88.89 66.67 83.33 94.44 88.24 94.74 78.26 93.33 83.33 91.67 84.62 94.74 90.91 93.33 78.26 84.21 81.82 88.46 86.67 83.33 92.31 80.95 70.00 82.61 88.89 95.65 96.77 79.17 91.67 92.86 80.00 70.00 100.00 73.33 80.00 81.25 K intron_retention Rbcn-3A chrX - chrX_6137848_6137905 chrX_6137847_6137848;chrX_6137905_6137906 chrX_6137623_6137847;chrX_6137906_6138157 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Ssadh,RI_chr3R_21451890_21451963,I_chr3R_21452371_21452464,I_chr3R_21452407_21452453 chr3R - chr3R_21452368_21452453;chr3R_21452386_21452453 chr3R_21452371_21452453 chr3R_21452454_21452553;chr3R_21452307_21452367 15.00 0.00 31.25 20.00 NA NA 17.65 16.67 17.39 NA 8.33 18.18 8.33 7.14 9.09 23.53 NA 15.38 NA 16.00 NA 13.04 15.00 11.76 NA NA 14.29 10.00 NA 15.00 15.38 18.18 NA 12.50 8.33 21.05 17.39 20.00 10.53 21.05 NA 21.05 NA 23.08 25.00 9.52 10.00 7.69 10.00 23.08 15.38 NA 6.67 11.76 11.76 NA 16.00 12.50 K alternative_acceptor CG10960,I_chr3L_12819402_12819475,I_chr3L_12820683_12835879 chr3L - chr3L_12819402_12819475 chr3L_12819406_12819475 chr3L_12819476_12819536;chr3L_12819337_12819401 100.00 100.00 99.28 99.55 100.00 100.00 98.80 99.65 99.69 98.11 100.00 100.00 98.82 100.00 99.32 99.30 100.00 99.25 100.00 100.00 99.13 100.00 100.00 97.98 100.00 100.00 100.00 100.00 100.00 100.00 99.30 100.00 100.00 100.00 100.00 100.00 98.97 100.00 100.00 99.02 100.00 99.63 100.00 100.00 100.00 99.09 100.00 100.00 100.00 100.00 99.22 98.46 100.00 98.46 99.40 100.00 100.00 100.00 K multi_cassette CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525393_1527189 chr3L_1525393_1526333;chr3L_1526399_1526659;chr3L_1526732_1527189 chr3L_1526334_1526398;chr3L_1526660_1526731 chr3L_1525293_1525392;chr3L_1527190_1527240 20.00 NA NA NA NA NA NA NA NA NA NA 95.00 NA NA NA NA NA NA NA 44.44 NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA 15.38 NA 12.50 NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA K alternative_donor CG3714,I_chr2L_4190825_4191774,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,I_chr2L_4196780_4197306,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4196780_4197146 chr2L_4196780_4197095 chr2L_4196715_4196779;chr2L_4197147_4197191 0.00 0.00 0.00 8.11 0.00 0.00 4.42 4.55 4.84 0.00 0.00 1.89 17.39 5.00 0.00 3.92 0.00 0.00 0.00 2.50 0.00 0.00 6.52 2.94 5.41 0.00 3.39 6.38 0.00 4.35 1.72 NA 0.00 5.00 3.70 5.26 3.45 0.00 0.00 4.76 0.00 3.28 0.00 1.49 NA 0.00 NA 0.00 0.00 2.27 0.00 0.00 NA NA 3.85 0.00 0.00 NA K intron_retention CG8736,noncoding_5214 chr2R - chr2R_4482147_4482353 chr2R_4482146_4482147;chr2R_4482353_4482354 chr2R_4481544_4482146;chr2R_4482354_4483748 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA 12.50 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 0.00 4.00 5.56 NA 30.77 0.00 14.29 NA NA NA NA 0.00 6.90 0.00 K intron_retention CG7766,I_chrX_8993495_8994545,I_chrX_8991338_8991387 chrX - chrX_8993495_8995128 chrX_8993494_8993495;chrX_8995128_8995129 chrX_8993395_8993494;chrX_8995129_8995452 5.81 3.45 8.00 8.22 9.68 9.52 15.38 11.43 10.81 5.26 4.76 17.28 0.00 11.54 5.36 5.80 17.07 8.89 13.79 10.75 10.34 3.81 7.81 5.36 4.88 10.20 7.58 10.00 9.09 5.81 4.29 5.41 4.23 5.68 8.47 4.76 4.62 2.63 7.27 5.31 2.27 11.58 10.87 6.58 1.47 2.13 5.13 3.92 10.26 5.26 7.81 6.52 3.45 0.00 9.33 1.89 5.13 2.97 K intron_retention RI_chr2R_11577574_11577625,CG33460,CG33461,CG33462 chr2R + chr2R_11582134_11582205 chr2R_11582133_11582134;chr2R_11582205_11582206 chr2R_11581982_11582133;chr2R_11582206_11582778 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG8405,I_chr2R_11936911_11936991 chr2R + chr2R_11936911_11936991 chr2R_11936915_11936991 chr2R_11936992_11937091;chr2R_11936848_11936910 96.97 94.74 100.00 95.12 94.74 94.74 96.43 100.00 97.56 94.44 95.65 100.00 100.00 100.00 95.65 100.00 100.00 95.45 100.00 98.44 100.00 97.14 96.97 95.65 95.00 93.75 100.00 94.44 95.83 100.00 83.33 100.00 100.00 100.00 92.31 100.00 97.78 95.24 100.00 95.45 94.12 97.78 94.12 100.00 100.00 100.00 94.12 95.24 97.50 94.74 96.55 100.00 90.48 100.00 93.33 94.74 94.74 100.00 K intron_retention CG14322 chr3R + chr3R_13494835_13494904 chr3R_13494834_13494835;chr3R_13494904_13494905 chr3R_13494833_13494834;chr3R_13494905_13494939 100.00 NA NA 95.65 NA NA 100.00 94.44 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 87.50 100.00 NA NA NA 81.82 NA NA NA NA NA NA 100.00 100.00 NA 95.24 100.00 NA NA NA NA 100.00 NA 94.12 NA NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 88.89 100.00 100.00 100.00 NA K intron_retention CG4133 chr2L + chr2L_455828_456085 chr2L_455827_455828;chr2L_456085_456086 chr2L_455543_455827;chr2L_456086_456223 47.06 NA NA 66.67 NA NA 47.06 44.00 31.25 NA NA 47.06 NA NA NA 54.55 NA NA 50.00 33.33 NA NA NA NA NA 53.33 50.00 NA NA NA NA NA NA 45.45 NA 56.25 NA NA NA 31.58 NA 45.45 36.36 50.00 NA 40.00 NA NA 45.45 NA NA NA NA NA 63.64 NA 60.00 NA K intron_retention Adam,I_chr2R_5857058_5857250,I_chr2R_5857078_5857245 chr2R + chr2R_5857360_5857423 chr2R_5857359_5857360;chr2R_5857423_5857424 chr2R_5857251_5857359;chr2R_5857424_5857712 0.00 0.00 0.00 0.88 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 1.88 1.46 0.00 0.00 0.00 0.51 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.31 0.00 0.00 K jcn_only_AA Sur-8 chr3R - chr3R_13225319_13227032 chr3R_13225324_13227032 chr3R_13227033_13227098;chr3R_13225253_13225318 100.00 100.00 100.00 100.00 98.60 100.00 100.00 99.49 100.00 99.15 99.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.59 99.01 99.67 99.69 99.01 100.00 100.00 99.25 98.01 99.15 100.00 99.63 98.56 99.45 99.43 100.00 100.00 100.00 99.09 100.00 99.71 98.78 99.07 100.00 99.71 100.00 100.00 100.00 99.12 100.00 100.00 100.00 99.27 98.90 100.00 100.00 99.47 100.00 100.00 K intron_retention CG5630 chr3R + chr3R_16752700_16754401 chr3R_16752699_16752700;chr3R_16754401_16754402 chr3R_16752493_16752699;chr3R_16754402_16754407 87.50 NA NA 14.29 NA NA NA 100.00 90.00 NA NA 66.67 88.89 NA NA 66.67 NA NA NA 83.33 NA 93.75 81.25 90.00 NA NA 87.50 NA NA NA 90.91 NA NA NA NA 90.00 83.33 NA 93.33 93.33 NA 75.00 NA 88.89 90.91 83.33 90.00 87.50 77.78 86.67 75.00 NA NA 72.73 NA NA 87.50 83.33 K intron_retention bbc,I_chr2R_9376554_9377246,REI_chr2R_9379401_9381986 chr2R - chr2R_9376554_9378939 chr2R_9376553_9376554;chr2R_9378939_9378940 chr2R_9376527_9376553;chr2R_9378940_9379098 95.24 94.44 100.00 100.00 96.88 92.86 94.12 96.72 94.59 93.33 96.88 89.66 97.67 97.06 95.24 96.83 100.00 90.00 95.65 95.38 96.77 95.42 94.20 84.75 93.55 96.30 95.31 90.24 91.18 96.77 86.96 92.86 94.74 96.88 95.45 71.79 96.72 87.76 91.89 93.75 88.89 98.15 96.00 81.82 80.00 94.44 84.62 100.00 97.96 96.67 97.78 97.30 92.31 93.33 97.06 88.46 95.65 88.89 K cassette RpL10Ab chr3L + chr3L_11815991_11816757 chr3L_11815991_11816299;chr3L_11816456_11816757 chr3L_11816300_11816455 chr3L_11815955_11815990;chr3L_11816758_11817314 99.96 99.97 99.79 99.14 99.91 99.96 99.97 99.82 99.93 99.95 99.86 99.88 99.96 100.00 99.91 99.91 99.95 99.82 99.96 99.84 99.91 98.56 100.00 100.00 100.00 99.74 100.00 99.92 99.94 100.00 99.87 99.97 99.95 99.90 100.00 99.96 100.00 100.00 99.98 99.88 99.93 99.88 99.86 99.98 99.92 99.98 99.97 99.98 99.90 99.97 100.00 100.00 99.98 100.00 99.91 100.00 100.00 99.98 K intron_retention Vha16,I_chr2R_2519645_2520499,RI_chr2R_2519646_2519840,I_chr2R_2519646_2520292,I_chr2R_2519646_2520298,I_chr2R_2519775_2520499 chr2R - chr2R_2519646_2519810 chr2R_2519645_2519646;chr2R_2519810_2519811 chr2R_2519546_2519645;chr2R_2519811_2519868 53.98 60.19 53.85 53.96 56.45 50.91 82.96 62.99 53.04 41.89 55.45 62.95 56.94 60.00 57.31 53.98 58.54 50.41 60.00 50.00 48.67 46.73 55.97 48.28 67.82 73.68 61.49 40.54 63.46 50.00 45.71 41.51 53.21 59.46 63.64 78.43 34.85 42.57 37.37 39.93 68.52 49.22 57.98 56.36 43.40 44.59 59.26 48.48 51.33 48.19 59.70 59.22 47.62 60.53 51.79 51.92 57.32 58.73 K intron_retention MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17399683_17401713 chr2R_17399682_17399683;chr2R_17401713_17401714 chr2R_17399598_17399682;chr2R_17401714_17401813 15.52 14.00 9.52 24.56 13.79 10.87 46.67 33.33 18.99 14.29 34.48 36.54 26.09 12.12 14.29 13.79 29.17 18.92 21.43 12.99 20.69 18.11 13.92 18.46 19.57 18.42 14.58 23.61 26.67 12.00 17.31 14.29 19.70 15.52 15.38 14.58 12.35 14.00 14.29 9.64 26.92 16.67 18.52 18.00 20.29 13.43 17.81 16.95 12.70 18.52 12.64 11.76 13.79 14.00 17.50 13.89 11.34 12.86 K intron_retention CG13779 chr2L + chr2L_7064198_7064252 chr2L_7064197_7064198;chr2L_7064252_7064253 chr2L_7064002_7064197;chr2L_7064253_7064467 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.98 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12926410_12926473 chr2R_12926410_12926467 chr2R_12926100_12926409;chr2R_12926474_12926605 90.20 91.55 87.50 90.20 92.86 88.46 85.53 87.74 88.52 92.06 97.30 91.67 87.50 87.72 81.93 90.91 86.21 92.11 88.52 88.89 79.31 96.55 87.70 96.81 87.50 91.43 94.62 90.77 91.75 85.06 89.47 96.30 88.89 89.26 96.92 92.71 91.67 85.07 83.84 91.14 92.98 88.14 88.89 95.70 93.33 89.33 87.06 92.70 93.18 84.00 86.84 91.53 95.08 90.24 89.01 87.10 90.74 92.59 K alternative_donor noncoding_4199 chr2L - chr2L_21540090_21540149 chr2L_21540090_21540144 chr2L_21539548_21540089;chr2L_21540150_21540275 10.75 10.38 10.07 10.75 13.37 10.88 9.09 10.73 12.24 12.07 9.68 10.90 10.04 10.98 10.49 13.45 11.16 9.84 10.85 9.57 10.15 11.94 16.67 11.23 8.20 11.30 10.26 8.86 12.20 10.29 11.58 10.37 14.67 11.22 11.11 8.41 8.74 11.65 9.61 10.71 12.42 11.48 12.55 9.48 9.71 11.34 12.07 14.58 11.98 11.14 7.33 8.65 9.71 13.18 9.33 10.65 10.39 9.92 K mutually_exclusive Dscam,I_chr2R_3212234_3216793,I_chr2R_3212243_3212342,F_chr2R_3219886_3228832,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3212243_3214121,chr2R_3214290_3216793 chr2R_3212243_3213656,chr2R_3213870_3216793 chr2R_3214122_3214289 chr2R_3213657_3213869 chr2R_3212143_3212242;chr2R_3216794_3216856 63.64 68.85 60.98 52.24 61.76 47.92 68.97 52.17 61.29 76.74 73.91 64.94 39.13 57.58 60.87 44.12 62.50 68.75 56.76 61.54 59.38 84.03 69.00 66.67 75.41 57.58 62.86 73.02 73.91 67.50 54.90 62.50 70.00 51.67 69.09 86.57 72.58 70.49 72.27 58.06 72.50 60.64 58.06 56.10 76.92 64.62 65.67 63.41 58.75 67.27 59.49 63.64 70.45 74.00 52.94 63.93 67.31 61.36 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2389980 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2389073;chrX_2389272_2389644;chrX_2389762_2389980 chrX_2387584_2387709;chrX_2388437_2388670;chrX_2389074_2389271;chrX_2389645_2389761 chrX_2387149_2387248;chrX_2389981_2390066 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA 66.67 NA NA NA 66.67 100.00 NA NA NA NA NA 100.00 NA NA NA N cassette Pvf2 chr2L - chr2L_7070947_7083185 chr2L_7070947_7074253;chr2L_7074357_7083185 chr2L_7074254_7074356 chr2L_7070421_7070946;chr2L_7083186_7083728 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.09 100.00 100.00 100.00 100.00 100.00 97.14 96.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention lva,CG6428 chrX - chrX_3854618_3854674 chrX_3854617_3854618;chrX_3854674_3854675 chrX_3854510_3854617;chrX_3854675_3858385 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention l(3)87Df chr3R + chr3R_8856992_8857056 chr3R_8856991_8856992;chr3R_8857056_8857057 chr3R_8856804_8856991;chr3R_8857057_8857663 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 2.44 2.27 6.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention tai,I_chr2L_9191814_9206231 chr2L + chr2L_9243179_9243234 chr2L_9243178_9243179;chr2L_9243234_9243235 chr2L_9242993_9243178;chr2L_9243235_9243545 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 2.03 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.77 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG16940,I_chr3L_212740_212843,I_chr3L_212783_212843,noncoding_9585,Kaz1-ORFA_Kaz1-ORFB chr3L + chr3L_212308_212843;chr3L_212788_212843 chr3L_212785_212843 chr3L_212844_212943;chr3L_212275_212307 100.00 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG11739,RI_chr3R_205772_205830,I_chr3R_207254_207600 chr3R + chr3R_205768_205830 chr3R_205772_205830 chr3R_205831_205930;chr3R_205672_205767 2.63 3.08 2.38 3.42 1.65 0.00 2.52 0.43 3.72 2.33 0.00 4.21 2.86 1.03 2.08 0.70 4.10 3.45 3.74 1.85 4.08 1.67 4.46 3.57 2.33 2.56 1.94 4.88 5.88 5.00 10.42 4.55 7.79 0.60 1.39 2.56 0.61 2.06 4.44 4.39 1.67 1.99 2.08 0.00 1.19 3.03 3.77 5.08 1.40 6.19 2.63 2.67 3.97 2.52 3.90 2.31 3.66 7.27 K intron_retention CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3017904_3017958 chr2L_3017903_3017904;chr2L_3017958_3017959 chr2L_3017812_3017903;chr2L_3017959_3018017 0.00 0.00 0.00 0.00 0.00 0.00 1.33 2.30 2.24 0.00 0.00 2.11 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 2.44 0.00 0.00 10.64 NA NA 0.00 0.68 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.35 0.00 1.92 0.00 K jcn_only_AA ATPsyn-Cf6,I_chr3R_19181282_19181355,I_chr3R_19181508_19181563,I_chr3R_19181524_19181702 chr3R - chr3R_19181282_19181355 chr3R_19181292_19181355 chr3R_19181356_19181424;chr3R_19181216_19181281 100.00 99.90 100.00 100.00 100.00 100.00 100.00 99.91 99.87 99.77 100.00 99.92 100.00 100.00 99.77 100.00 100.00 100.00 99.86 99.94 100.00 100.00 100.00 99.92 100.00 99.69 99.90 100.00 100.00 99.87 99.89 100.00 99.88 100.00 100.00 100.00 100.00 100.00 99.94 100.00 99.71 99.94 100.00 99.88 100.00 99.87 99.93 100.00 99.90 99.90 100.00 100.00 100.00 99.79 100.00 100.00 99.95 100.00 K alternative_donor RI_chrX_7172561_7252693,CG1677,I_chrX_7178792_7252693,unc-119,I_chrX_7183298_7183371,RI_chrX_7183298_7184274 chrX - chrX_7183298_7183538 chrX_7183298_7183371 chrX_7183198_7183297;chrX_7183539_7183711 16.00 NA 22.22 16.00 18.18 11.76 18.18 8.00 12.12 NA NA 17.86 20.00 28.57 25.00 17.39 18.18 36.36 9.52 16.67 30.77 16.67 8.00 21.05 15.38 0.00 17.39 NA 18.18 18.18 17.65 NA 18.18 12.00 14.29 11.76 13.33 0.00 5.88 21.43 NA 19.05 26.67 NA 14.29 14.29 12.00 NA 21.43 7.14 10.00 14.29 NA 5.56 11.76 5.88 15.38 NA K alternative_donor RpL17,I_chrX_6637182_6638207,RI_chrX_6637182_6637528,I_chrX_6637182_6637973,snoRNA:Psi28S-1232 chrX - chrX_6637182_6638178;chrX_6637182_6638228;chrX_6637182_6637982 chrX_6637182_6638141 chrX_6637093_6637181;chrX_6638229_6638235 37.04 42.86 45.00 37.04 46.94 43.59 57.78 41.51 47.14 6.82 55.88 49.18 64.86 46.88 40.00 42.42 50.00 54.35 38.46 42.05 44.44 11.21 38.89 34.15 35.29 55.32 18.60 11.11 27.96 9.09 31.25 5.50 4.00 37.78 15.69 11.32 43.75 42.86 35.19 9.24 6.45 42.22 41.03 12.96 13.22 9.21 29.63 4.68 33.96 16.33 43.33 42.86 6.69 29.73 38.00 27.78 16.09 4.97 K intron_retention Nlp,I_chr3R_25834987_25835399 chr3R + chr3R_25830778_25831009 chr3R_25830777_25830778;chr3R_25831009_25831010 chr3R_25830755_25830777;chr3R_25831010_25831143 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.35 0.00 0.75 0.86 1.86 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.16 0.17 0.00 0.37 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention faf,RI_chr3R_27603474_27603893,E_chr3R_27613964_27614381,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27613920_27614381 chr3R_27613919_27613920;chr3R_27614381_27614382 chr3R_27613864_27613919;chr3R_27614382_27614481 93.33 93.33 92.86 95.45 NA NA 86.21 93.33 96.15 93.75 100.00 90.00 100.00 100.00 100.00 93.33 90.91 93.75 93.75 97.73 92.31 90.48 91.30 84.21 78.57 92.31 95.65 94.74 82.14 100.00 100.00 81.25 76.47 81.82 100.00 95.83 93.75 91.67 90.48 85.71 80.95 96.15 NA 93.75 91.67 90.48 88.89 96.43 100.00 94.12 95.24 NA NA 93.75 92.86 89.47 91.67 95.00 K intron_retention CG17734,I_chr3R_7068286_7069503 chr3R - chr3R_7068736_7069503 chr3R_7068735_7068736;chr3R_7069503_7069504 chr3R_7068546_7068735;chr3R_7069504_7069603 0.81 0.85 0.00 1.05 0.00 1.26 0.75 0.43 2.13 1.72 0.00 1.71 2.20 0.00 0.00 0.00 0.98 0.00 1.18 1.56 0.76 1.92 1.34 2.05 0.00 0.00 2.21 3.06 0.81 0.00 1.28 0.71 0.70 0.00 0.00 2.06 2.67 1.45 3.30 1.90 0.58 0.33 0.00 1.43 0.00 1.39 0.00 0.00 1.29 0.61 2.24 0.98 0.00 1.57 1.10 0.00 0.00 0.74 K jcn_only_AD CG3829,I_chr2R_20874677_20875710,I_chr2R_20874711_20875717,I_chr2R_20875172_20875710,I_chr2R_20875497_20875710 chr2R + chr2R_20875497_20875710;chr2R_20875350_20875710;chr2R_20874711_20875710 chr2R_20875172_20875710 chr2R_20875711_20875810;chr2R_20874611_20874710 2.94 NA 0.00 2.94 4.00 3.12 7.69 2.38 1.47 NA 0.00 2.08 6.90 3.03 2.94 4.55 0.00 4.88 0.00 3.41 0.00 0.00 NA NA NA 2.56 NA NA 9.09 NA 0.00 NA NA 0.00 NA NA NA NA NA 3.70 NA 2.08 8.00 NA NA 4.55 NA 0.00 6.38 NA NA NA NA NA 10.71 NA NA 10.00 K jcn_only_AD ZnT63C chr3L + chr3L_3303853_3304601;chr3L_3304022_3304601 chr3L_3303837_3304601 chr3L_3304602_3304665;chr3L_3303742_3303836 5.23 3.31 8.40 3.01 7.63 3.31 6.16 6.94 6.21 3.36 4.24 4.62 6.67 5.17 3.39 2.58 4.59 11.21 2.54 8.25 5.15 10.92 6.30 6.06 3.51 4.21 6.12 7.69 1.67 2.06 8.48 7.69 1.89 8.33 5.56 3.06 8.99 5.30 5.93 3.42 7.07 5.06 7.45 6.81 21.21 5.77 5.23 1.89 5.58 5.19 5.17 3.36 6.52 3.33 3.09 5.23 9.24 2.50 K jcn_only_AA Ark,I_chr2R_12909344_12909416,RI_chr2R_12912984_12913058 chr2R + chr2R_12912984_12913058 chr2R_12912984_12913038 chr2R_12912884_12912983;chr2R_12913059_12913158 100.00 98.11 97.62 100.00 100.00 100.00 99.08 98.95 97.83 100.00 100.00 98.95 100.00 100.00 100.00 100.00 97.67 100.00 100.00 97.65 100.00 98.91 98.53 100.00 96.43 100.00 100.00 93.10 100.00 96.77 96.84 100.00 100.00 98.02 100.00 97.30 100.00 93.33 100.00 100.00 100.00 97.44 100.00 98.36 100.00 100.00 97.87 100.00 98.90 98.55 98.15 97.67 100.00 96.97 98.59 97.06 100.00 98.00 N alternative_donor CG9339,RE_chr2L_20903555_20916904,I_chr2L_20903560_20918638,I_chr2L_20922613_20922685 chr2L - chr2L_20917121_20918798;chr2L_20917121_20918638 chr2L_20917121_20918093 chr2L_20916905_20917120;chr2L_20918799_20918888 31.11 28.57 29.41 32.35 33.33 38.46 39.39 37.14 40.48 28.57 27.27 40.74 23.81 33.33 33.33 31.11 46.15 41.67 27.27 29.73 33.33 20.00 19.05 42.86 33.33 30.77 41.67 40.00 25.00 31.25 33.33 22.22 25.00 37.50 28.57 31.25 15.38 20.00 33.33 20.00 33.33 34.62 37.50 21.43 25.00 13.33 9.09 25.00 31.43 28.57 30.77 18.75 14.29 12.50 50.00 22.22 33.33 41.67 K alternative_donor CG8949,I_chrX_16966573_16966630,I_chrX_16971501_16971713 chrX - chrX_16966573_16966681 chrX_16966573_16966630 chrX_16966487_16966572;chrX_16966682_16966730 0.00 5.56 0.00 0.00 5.26 0.00 3.45 0.00 4.08 NA 0.00 2.00 3.33 0.00 5.13 0.00 0.00 0.00 3.12 1.96 0.00 9.68 3.23 0.00 0.00 4.35 6.90 0.00 5.88 4.76 8.00 5.56 4.44 2.22 4.55 0.00 2.94 0.00 3.70 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 K intron_retention Eb1,RI_chr2R_2640290_2642206,I_chr2R_2640494_2642206,I_chr2R_2641187_2642206,RI_chr2R_2641944_2642025,I_chr2R_2641954_2642206,I_chr2R_2642491_2642549 chr2R + chr2R_2640290_2640347 chr2R_2640289_2640290;chr2R_2640347_2640348 chr2R_2640190_2640289;chr2R_2640348_2640353 0.00 0.00 0.00 0.45 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA E_chr2RHet_2881760_2912543,eIF-4B,I_chr2RHet_2903246_2912532,I_chr2RHet_2912605_2917250 chr2RHet + chr2RHet_2901839_2902098 chr2RHet_2901839_2902093 chr2RHet_2901816_2901838;chr2RHet_2902099_2902500 100.00 100.00 100.00 100.00 98.86 100.00 100.00 99.55 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.50 99.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.55 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG17683,I_chr2R_18774_18869,I_chr2R_19002_19060 chr2R + chr2R_18998_19060 chr2R_19002_19060 chr2R_19061_19124;chr2R_18902_18997 100.00 93.75 92.31 100.00 100.00 100.00 95.00 95.83 96.77 NA 100.00 100.00 87.50 92.31 100.00 100.00 94.44 92.31 94.44 100.00 100.00 100.00 94.44 100.00 100.00 100.00 96.00 92.31 100.00 100.00 92.00 100.00 88.89 100.00 100.00 100.00 94.12 100.00 100.00 95.24 NA 95.45 93.75 92.86 100.00 90.00 92.86 100.00 96.67 100.00 93.75 100.00 100.00 100.00 100.00 90.91 100.00 100.00 K intron_retention CtBP chr3R + chr3R_8838056_8845063 chr3R_8838055_8838056;chr3R_8845063_8845064 chr3R_8837730_8838055;chr3R_8845064_8845536 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 K jcn_only_AA CG12024,REI_chr3L_1857404_1857509 chr3L + chr3L_1857404_1857464;chr3L_1857404_1857509 chr3L_1857404_1857512 chr3L_1857304_1857403;chr3L_1857513_1857609 45.36 46.34 47.73 61.22 44.68 53.33 41.03 31.91 45.36 43.24 39.02 46.81 42.86 39.29 52.08 38.10 39.39 63.89 54.17 42.57 52.63 32.10 53.61 50.56 36.59 50.00 41.46 52.33 45.78 50.53 57.14 38.60 41.54 50.77 31.03 28.57 53.33 43.37 43.82 48.08 57.69 44.58 56.67 45.88 47.67 43.08 47.13 35.00 50.00 40.23 47.73 35.71 51.95 38.46 41.67 41.38 47.87 43.24 K intron_retention RpS20,snoRNA:Psi28S-2562 chr3R + chr3R_16648582_16648853 chr3R_16648581_16648582;chr3R_16648853_16648854 chr3R_16648524_16648581;chr3R_16648854_16649080 99.50 99.68 99.22 99.15 99.74 99.34 99.48 99.69 99.71 99.06 99.71 99.25 99.07 99.56 99.69 99.50 99.86 99.50 99.38 99.26 99.13 99.65 99.72 99.50 99.75 99.45 99.48 99.48 97.47 99.54 99.35 98.92 98.82 99.64 99.42 99.04 99.51 99.73 99.66 99.41 99.20 99.63 99.26 99.73 99.32 99.70 99.53 99.31 99.49 99.79 99.51 99.75 99.50 99.60 99.22 99.57 99.64 99.39 N jcn_only_AA CG34140,CG34140_Mkp,noncoding_9561 chr3L - chr3L_184068_184131 chr3L_184073_184131 chr3L_184132_184197;chr3L_184008_184067 79.46 77.03 100.00 79.52 75.00 100.00 100.00 85.71 81.08 100.00 73.58 77.19 75.44 66.67 81.43 81.13 77.78 100.00 100.00 81.08 76.19 78.85 79.46 80.85 79.66 73.53 75.00 77.38 80.77 100.00 74.07 100.00 100.00 100.00 80.77 74.68 75.82 80.00 78.41 78.08 65.38 79.21 100.00 86.15 100.00 70.59 75.86 100.00 78.81 76.71 81.05 75.00 73.68 67.27 75.93 77.94 79.49 100.00 K alternative_acceptor Gpo-1,I_chr2R_11747621_11747699,EI_chr2R_11747445_11747699,I_chr2R_11749758_11750187,I_chr2R_11756325_11756380 chr2R - chr2R_11748228_11749386 chr2R_11748259_11749386 chr2R_11749387_11749428;chr2R_11748106_11748227 100.00 100.00 NA NA NA NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 90.91 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 87.50 K jcn_only_AA CG3608 chr2R + chr2R_20500970_20501033 chr2R_20500970_20501030 chr2R_20500901_20500969;chr2R_20501034_20501099 98.90 100.00 100.00 100.00 100.00 96.88 100.00 98.48 100.00 100.00 NA 97.40 100.00 96.55 100.00 96.88 96.30 100.00 96.77 98.85 100.00 95.56 100.00 97.14 100.00 100.00 96.36 96.67 100.00 95.52 97.62 96.51 100.00 100.00 96.67 100.00 100.00 97.83 100.00 96.91 98.91 98.86 100.00 98.67 98.89 97.65 100.00 99.23 100.00 100.00 98.31 100.00 97.92 97.50 98.36 100.00 97.53 98.73 K cassette CG31619 chr2L + chr2L_21719644_21725067 chr2L_21719644_21720358;chr2L_21720482_21725067 chr2L_21720359_21720481 chr2L_21719514_21719643;chr2L_21725068_21725445 8.45 7.55 11.11 4.41 5.26 5.00 5.71 11.48 7.69 2.86 NA 11.63 NA 8.89 7.55 7.58 9.43 25.00 10.81 19.12 NA 16.67 5.26 6.90 15.38 6.98 6.38 NA 8.33 9.80 5.41 7.32 6.52 10.13 11.54 26.09 10.53 10.42 11.48 9.78 5.26 7.34 7.69 10.00 13.11 8.54 10.87 9.30 6.25 6.90 8.45 12.90 10.34 5.56 8.47 8.20 4.88 6.09 K alternative_donor CG31998,I_chr4_225419_226294 chr4 - chr4_225419_226474;chr4_225419_226366 chr4_225419_226284 chr4_225319_225418;chr4_226475_226518 0.00 0.00 0.00 5.41 0.00 0.00 5.41 6.06 4.35 NA 0.00 3.85 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 16.67 20.00 NA NA 0.00 NA 0.00 3.70 0.00 0.00 0.00 NA NA 0.00 NA 5.26 0.00 0.00 NA NA NA 0.00 3.85 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention Nc73EF,I_chr3L_16950628_16951334,I_chr3L_16950952_16952198,I_chr3L_16951588_16952198,I_chr3L_16951626_16952198,I_chr3L_16952138_16952198,I_chr3L_16952985_16955434,I_chr3L_16953768_16954599 chr3L + chr3L_16948643_16952198 chr3L_16948642_16948643;chr3L_16952198_16952199 chr3L_16948635_16948642;chr3L_16952199_16952207 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.33 0.00 NA NA 1.72 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA 6.25 NA NA NA NA 0.00 0.00 NA NA NA NA NA 1.92 NA NA NA NA NA 0.00 NA NA NA K intron_retention scu,noncoding_24518 chrX + chrX_17985424_17985984 chrX_17985423_17985424;chrX_17985984_17985985 chrX_17985361_17985423;chrX_17985985_17986886 1.19 0.91 1.46 1.51 1.13 0.00 0.00 1.52 0.56 2.24 1.21 1.19 1.11 3.64 0.00 3.48 0.64 3.10 0.75 1.64 2.76 5.38 1.10 2.40 1.75 1.24 3.55 2.14 1.12 1.03 0.83 1.16 0.98 0.00 0.00 0.70 0.93 1.24 1.31 1.86 0.00 1.10 0.00 0.52 1.52 1.08 1.91 0.00 2.41 0.51 2.78 1.56 2.12 1.03 1.67 0.00 2.19 2.21 K intron_retention CG8963,I_chr2R_12906431_12906583,I_chr2R_12906930_12906989 chr2R - chr2R_12906855_12906937 chr2R_12906854_12906855;chr2R_12906937_12906938 chr2R_12906830_12906854;chr2R_12906938_12907019 57.53 NA 50.00 36.84 63.64 60.00 55.00 50.00 40.54 70.00 87.50 52.00 45.45 66.67 71.43 42.86 28.57 NA 50.00 50.00 NA 52.00 73.68 60.00 87.50 81.82 80.00 58.82 69.23 66.67 87.50 NA 66.67 56.25 NA NA 46.15 45.45 66.67 56.00 80.00 60.87 46.15 50.00 60.00 47.06 56.25 66.67 55.56 50.00 45.00 NA NA NA 41.67 80.00 64.29 61.54 K alternative_donor CG12393,CG9135 chr2L + chr2L_6048635_6048693;chr2L_6048631_6048693 chr2L_6048627_6048693 chr2L_6048694_6048702;chr2L_6048512_6048626 4.55 5.56 0.00 4.35 0.00 9.09 5.56 4.00 0.00 NA 8.33 0.00 0.00 0.00 6.67 3.23 7.69 4.00 0.00 9.68 0.00 4.55 0.00 9.09 NA 5.00 7.14 0.00 12.50 12.50 8.33 10.00 9.09 4.00 11.11 0.00 0.00 0.00 4.55 5.00 10.00 4.76 0.00 0.00 8.33 15.38 0.00 7.69 4.35 0.00 0.00 10.00 0.00 0.00 5.88 0.00 6.25 14.29 K intron_retention Zasp52,I_chr2R_11690989_11702233,I_chr2R_11690993_11695684,I_chr2R_11690993_11701815,I_chr2R_11690993_11701987,E_chr2R_11690995_11702237 chr2R - chr2R_11690993_11704264 chr2R_11690992_11690993;chr2R_11704264_11704265 chr2R_11690895_11690992;chr2R_11704265_11704488 0.00 0.00 0.00 0.00 5.00 2.27 3.03 2.22 2.21 0.00 4.17 2.70 7.14 1.89 5.00 4.48 5.77 1.96 0.00 0.00 2.56 0.00 0.00 0.00 0.00 6.38 3.51 0.00 0.00 0.00 3.12 0.00 0.00 3.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.90 0.00 0.00 0.00 0.00 0.00 0.00 2.97 0.00 1.79 0.00 NA 0.00 3.90 0.00 0.00 0.00 K jcn_only_AA CG7927,I_chr3L_8109906_8110404 chr3L + chr3L_8105815_8106114 chr3L_8105815_8106111 chr3L_8105594_8105814;chr3L_8106115_8106427 100.00 100.00 98.86 97.98 98.63 98.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.70 100.00 97.65 100.00 100.00 100.00 98.17 100.00 100.00 98.68 98.86 100.00 100.00 98.99 100.00 100.00 99.33 99.24 100.00 98.70 100.00 98.72 100.00 100.00 98.95 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.97 100.00 98.18 100.00 98.95 100.00 100.00 98.70 K jcn_only_AA RI_chrX_502548_513324,CG13366,I_chrX_509497_513324,I_chrX_513176_513324,I_chrX_513519_513631 chrX - chrX_509546_513324 chrX_513176_513324 chrX_513325_513424;chrX_508807_509545 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA NA NA NA K intron_retention CG6954,I_chr3R_18492755_18493701,I_chr3R_18492801_18502630,I_chr3R_18493099_18493701 chr3R + chr3R_18493765_18502630 chr3R_18493764_18493765;chr3R_18502630_18502631 chr3R_18493705_18493764;chr3R_18502631_18502730 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 7.69 NA NA NA NA NA NA NA 5.26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG14741 chr3R - chr3R_7899339_7900180 chr3R_7899338_7899339;chr3R_7900180_7900181 chr3R_7899048_7899338;chr3R_7900181_7900195 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.91 99.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor RpL12,I_chr2R_19948517_19948655,RI_chr2R_19948517_19948677,I_chr2R_19948517_19948682 chr2R + chr2R_19948517_19948672;chr2R_19948517_19948682;chr2R_19948517_19948677 chr2R_19948517_19948655 chr2R_19948417_19948516;chr2R_19948683_19948755 0.03 0.05 0.00 0.04 0.00 0.13 0.00 0.05 0.03 0.12 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.24 0.05 0.05 0.09 0.00 0.10 0.25 0.10 0.00 0.06 0.00 0.10 0.00 0.00 0.00 0.04 0.00 0.08 0.05 0.08 0.00 0.00 0.00 0.06 0.05 0.04 0.11 0.00 0.00 0.05 0.00 0.04 0.04 0.00 0.00 0.07 0.09 K intron_retention CG31886 chr2L - chr2L_8955587_8958877 chr2L_8955586_8955587;chr2L_8958877_8958878 chr2L_8953483_8955586;chr2L_8958878_8959051 18.20 NA NA NA NA NA 46.15 16.67 14.29 NA NA 15.38 NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA 11.76 NA NA NA NA NA 25.00 NA 17.65 11.76 NA NA NA NA NA 33.33 NA 25.00 NA NA NA 18.75 NA NA NA K alternative_last_exon CG13085,REI_chr2L_19426699_19427208,I_chr2L_19426780_19427208,CG16771,I_chr2L_19426895_19427208,I_chr2L_19427121_19427208 chr2L + chr2L_19426699_19429401 chr2L_19426699_19427208 chr2L_19429402_19430270 chr2L_19427209_19429224 chr2L_19426680_19426698 97.62 98.10 98.30 97.33 97.92 97.99 97.65 97.33 97.81 96.74 98.68 98.03 94.78 97.93 97.58 96.55 96.81 98.58 98.33 97.85 97.96 97.58 96.15 96.59 97.30 98.51 97.65 98.31 97.07 97.46 98.05 96.35 99.01 97.90 96.48 98.73 97.44 97.95 97.02 96.86 97.50 98.26 98.45 96.36 98.74 97.07 96.59 97.62 97.79 96.47 95.71 96.64 97.13 95.65 97.83 96.94 98.21 97.96 K jcn_only_AD CG33655,I_chr2R_17207309_17207365 chr2R - chr2R_17207309_17207369 chr2R_17207309_17207365 chr2R_17207209_17207308;chr2R_17207370_17207465 8.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention eIF4G,I_chr4_948813_950447 chr4 - chr4_936894_937492 chr4_936893_936894;chr4_937492_937493 chr4_936747_936893;chr4_937493_937716 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD wun2,I_chr2R_5304606_5304660 chr2R + chr2R_5304299_5304362 chr2R_5304302_5304362 chr2R_5304363_5304430;chr2R_5304233_5304298 100.00 100.00 99.12 100.00 98.98 100.00 100.00 100.00 99.74 100.00 99.24 100.00 100.00 100.00 100.00 98.97 100.00 100.00 99.29 99.30 100.00 100.00 99.64 100.00 100.00 100.00 98.80 99.47 100.00 99.55 100.00 100.00 98.78 99.49 100.00 99.15 100.00 100.00 99.65 99.43 100.00 99.68 100.00 100.00 99.43 100.00 100.00 100.00 100.00 99.41 99.69 100.00 100.00 100.00 100.00 99.64 100.00 100.00 K jcn_only_AA CG11125 chr2R + chr2R_3336125_3336287 chr2R_3336125_3336263 chr2R_3335817_3336124;chr2R_3336288_3336446 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 NA 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 3.03 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Klp68D chr3L + chr3L_11788772_11788957 chr3L_11788799_11788957 chr3L_11788958_11789721;chr3L_11788723_11788771 96.87 NA NA NA NA NA 96.77 NA 97.67 NA NA 96.30 NA 95.24 NA 100.00 NA 100.00 NA 96.00 NA 100.00 95.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.97 NA 90.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG11063 chrX - chrX_13721139_13721372 chrX_13721154_13721372 chrX_13721373_13721542;chrX_13721076_13721138 23.66 28.57 25.93 29.25 28.57 21.62 21.21 27.27 35.48 15.62 35.00 27.78 26.23 14.06 16.25 25.64 31.48 25.93 30.67 22.70 25.71 26.67 25.53 23.53 20.31 31.82 23.66 19.64 16.89 28.04 18.09 18.81 28.32 21.37 24.76 27.03 32.98 24.68 26.36 18.89 26.14 21.08 33.33 20.78 21.82 18.81 16.33 25.82 25.34 22.02 21.88 12.24 23.64 18.68 19.09 19.05 21.43 23.20 K intron_retention CycD,I_chrX_15803256_15803313 chrX - chrX_15803256_15803313 chrX_15803255_15803256;chrX_15803313_15803314 chrX_15803156_15803255;chrX_15803314_15803380 95.00 100.00 NA 94.12 NA 100.00 94.44 100.00 94.12 NA NA 85.71 80.00 90.00 NA 100.00 NA NA 92.31 95.00 NA NA 100.00 100.00 100.00 100.00 100.00 77.78 100.00 NA 88.89 NA 90.00 100.00 88.89 100.00 NA 90.91 90.00 90.91 NA 100.00 100.00 NA NA 100.00 NA NA 94.74 100.00 100.00 NA NA 88.89 NA NA NA 88.89 K alternative_acceptor CG8412,I_chr3R_5583152_5583200 chr3R + chr3R_5583152_5583217 chr3R_5583152_5583200 chr3R_5583052_5583151;chr3R_5583218_5583300 0.00 0.00 0.00 0.00 0.00 3.85 1.92 0.00 2.33 0.00 0.00 5.26 0.00 0.00 3.45 3.85 0.00 4.00 4.55 3.12 0.00 10.00 9.38 0.00 0.00 0.00 2.33 6.67 0.00 4.17 3.39 0.00 0.00 2.86 0.00 0.00 5.00 0.00 3.23 2.50 0.00 0.00 0.00 0.00 4.76 0.00 0.00 4.35 2.50 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.55 NA K jcn_only_AA CG8399,E_chr2R_11909562_11911687,E_chr2R_11909562_11911694,E_chr2R_11909564_11911694 chr2R + chr2R_11911365_11911590 chr2R_11911365_11911563 chr2R_11911262_11911364;chr2R_11911591_11911719 4.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.00 NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG1965,I_chr3R_2902064_2902611 chr3R + chr3R_2894671_2894727 chr3R_2894670_2894671;chr3R_2894727_2894728 chr3R_2894430_2894670;chr3R_2894728_2894910 0.00 0.00 0.00 2.44 NA 0.00 0.00 0.00 1.82 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.90 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 1.75 10.53 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K cassette east,CR_chrX_1912038_1912737 chrX + chrX_1912038_1912737 chrX_1912038_1912112;chrX_1912120_1912737 chrX_1912113_1912119 chrX_1911938_1912037;chrX_1912738_1912837 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention app,RI_chr3L_12201038_12201989,I_chr3L_12259361_12259754 chr3L - chr3L_12205868_12206192 chr3L_12205867_12205868;chr3L_12206192_12206193 chr3L_12205753_12205867;chr3L_12206193_12206397 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.06 0.00 4.65 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG5708,I_chr2L_10225966_10226334,I_chr2L_10225966_10226377 chr2L - chr2L_10225966_10226773 chr2L_10225966_10226664 chr2L_10225874_10225965;chr2L_10226774_10226842 100.00 NA NA NA NA NA 100.00 100.00 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA K jcn_only_AA CG2691,noncoding_23539 chrX - chrX_13518134_13518196 chrX_13518140_13518196 chrX_13518197_13518439;chrX_13517580_13518133 100.00 100.00 100.00 100.00 100.00 98.70 98.67 99.03 97.62 100.00 100.00 98.67 98.15 100.00 100.00 98.57 100.00 100.00 100.00 99.07 100.00 100.00 99.19 99.26 100.00 100.00 97.67 99.10 97.79 99.17 100.00 100.00 99.22 99.06 100.00 96.88 100.00 100.00 99.30 98.67 100.00 98.75 100.00 100.00 100.00 98.99 100.00 99.53 100.00 98.85 100.00 98.75 98.82 97.50 98.57 100.00 100.00 99.54 K intron_retention chb,noncoding_13909 chr3L + chr3L_21169629_21171196 chr3L_21169628_21169629;chr3L_21171196_21171197 chr3L_21168749_21169628;chr3L_21171197_21175379 0.00 0.00 0.00 1.96 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.52 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K intron_retention Dek chr2R + chr2R_12743809_12744310 chr2R_12743808_12743809;chr2R_12744310_12744311 chr2R_12743780_12743808;chr2R_12744311_12744557 7.56 12.99 7.22 5.56 7.46 12.68 4.48 7.56 6.22 5.63 6.06 9.42 6.49 11.11 8.79 9.00 6.33 10.61 10.17 4.42 14.58 4.04 8.92 10.78 4.49 14.29 10.14 10.71 3.45 4.39 13.89 3.21 3.17 7.01 8.77 9.52 4.08 9.09 7.08 6.47 4.23 8.75 8.45 6.33 2.42 6.19 13.33 1.47 9.52 23.26 7.14 10.00 11.48 17.65 8.14 18.87 5.00 1.50 K intron_retention mri,RI_chr3L_201061_201173,I_chr3L_212783_212843 chr3L + chr3L_201759_201816 chr3L_201758_201759;chr3L_201816_201817 chr3L_201441_201758;chr3L_201817_202165 11.11 9.89 12.28 46.94 11.32 8.06 16.25 13.48 11.27 5.71 12.70 15.79 7.81 3.33 8.64 9.52 12.73 15.69 9.23 7.24 11.11 17.50 14.41 9.52 28.30 12.90 11.11 12.00 11.32 9.09 21.74 8.86 14.81 10.00 12.79 46.51 9.01 12.35 12.03 6.09 29.41 12.78 10.71 9.47 2.75 7.30 9.45 4.29 10.92 11.35 7.77 10.42 4.44 11.21 14.29 10.08 5.16 6.67 K intron_retention RI_chr3L_20370940_20371530,I_chr3L_20374844_20374891,fbl chr3L + chr3L_20381948_20383015 chr3L_20381947_20381948;chr3L_20383015_20383016 chr3L_20381769_20381947;chr3L_20383016_20383308 1.75 0.00 2.94 8.20 0.00 2.78 6.25 0.00 2.58 0.00 2.56 2.68 0.00 1.69 3.95 1.35 0.00 1.56 2.13 1.60 4.26 5.36 1.75 1.96 3.03 0.00 3.15 1.52 2.78 1.27 3.70 0.00 0.00 2.75 0.00 1.89 1.46 0.00 0.00 1.34 0.00 4.80 3.57 0.00 3.85 2.44 4.05 0.00 3.03 3.70 0.00 0.00 0.00 0.00 4.11 1.37 2.56 2.63 K alternative_donor EI_chr3R_7069743_7070508,CG5214,I_chr3R_7070289_7070508,I_chr3R_7070385_7070508 chr3R + chr3R_7069743_7070508 chr3R_7070239_7070508 chr3R_7070509_7070608;chr3R_7069738_7069742 98.65 100.00 100.00 96.49 97.14 97.78 96.15 98.55 98.90 95.00 96.88 98.80 100.00 100.00 96.43 98.65 100.00 97.67 100.00 100.00 100.00 98.00 100.00 100.00 96.55 100.00 100.00 100.00 97.96 100.00 93.10 98.41 98.98 100.00 97.92 97.30 96.77 100.00 98.46 95.51 98.00 98.88 97.37 96.77 98.65 100.00 97.96 98.94 100.00 100.00 100.00 97.73 97.56 100.00 98.46 100.00 98.15 97.27 K intron_retention Doa,I_chr3R_24715823_24718923,I_chr3R_24747391_24747896 chr3R + chr3R_24715823_24726545 chr3R_24715822_24715823;chr3R_24726545_24726546 chr3R_24715727_24715822;chr3R_24726546_24726744 0.00 0.00 0.00 0.77 0.00 0.00 4.44 0.70 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.69 0.00 0.00 0.00 0.00 1.02 0.00 2.04 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Nmnat chr3R + chr3R_20772018_20772675;chr3R_20772018_20772197 chr3R_20772018_20772605 chr3R_20771916_20772017;chr3R_20772676_20772744 90.24 NA NA NA NA NA 90.91 100.00 87.50 59.09 NA 75.00 NA NA NA NA NA NA NA 92.00 NA 100.00 87.88 NA NA NA 100.00 NA 100.00 NA 86.36 90.00 NA 96.67 NA 100.00 91.30 NA NA 84.62 90.48 82.61 NA 77.42 86.96 94.87 NA 93.55 96.00 90.91 80.00 NA 81.48 86.36 NA 90.48 85.29 78.57 K intron_retention CG18012 chr3R - chr3R_13635522_13635579 chr3R_13635521_13635522;chr3R_13635579_13635580 chr3R_13635117_13635521;chr3R_13635580_13636140 2.59 3.21 1.70 20.44 2.86 1.38 1.18 4.26 2.01 2.50 1.69 2.30 0.00 2.59 3.64 2.26 3.54 2.61 2.33 3.18 2.99 0.00 7.38 3.39 8.60 7.76 10.49 11.11 4.88 0.00 3.67 2.15 1.49 1.73 3.30 0.93 2.61 2.37 1.99 3.12 9.28 2.46 2.34 0.67 1.65 2.63 3.95 3.12 2.49 1.55 3.12 4.21 3.05 1.40 1.27 2.86 1.05 0.00 N intron_retention CG8108,EI_chr3L_9859462_9859590,chr3L_9859594_9859878.0 chr3L + chr3L_9859462_9860377 chr3L_9859461_9859462;chr3L_9860377_9860378 chr3L_9859414_9859461 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 85.19 NA NA 100.00 100.00 42.11 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 NA NA NA K jcn_only_AA Gs2 chrX + chrX_11318137_11318297;chrX_11318137_11318314 chrX_11318137_11318302 chrX_11318068_11318136;chrX_11318315_11318487 100.00 100.00 100.00 100.00 NA 100.00 95.12 NA 97.56 100.00 NA 97.96 NA NA 100.00 100.00 NA NA 100.00 98.41 NA 98.78 97.67 100.00 100.00 100.00 100.00 98.36 100.00 100.00 97.50 100.00 100.00 100.00 100.00 93.62 100.00 NA 98.25 98.53 100.00 100.00 NA 100.00 96.88 100.00 94.92 100.00 97.44 99.36 100.00 NA 100.00 100.00 100.00 NA 100.00 NA K intron_retention Pk92B chr3R + chr3R_15706033_15706604 chr3R_15706032_15706033;chr3R_15706604_15706605 chr3R_15705838_15706032;chr3R_15706605_15706783 4.65 8.51 0.00 1.75 4.65 0.00 9.38 1.67 4.00 3.85 0.00 4.55 6.67 0.00 3.64 6.56 0.00 11.76 3.70 6.45 5.26 10.14 6.67 4.88 13.51 6.25 4.55 0.00 8.00 3.08 13.46 9.09 10.67 1.82 10.81 13.46 2.44 8.89 5.97 3.12 12.50 6.58 7.69 6.78 0.00 0.00 0.00 6.90 3.66 0.00 9.38 0.00 6.25 0.00 4.17 5.26 0.00 0.00 K jcn_only_AD gcl,I_chr2R_4611970_4612145,psnoRNA:gcl-a,I_chr2R_4614277_4614332 chr2R + chr2R_4611943_4614119 chr2R_4611970_4614119 chr2R_4614120_4614231;chr2R_4611870_4611942 100.00 NA NA 100.00 NA NA NA 100.00 92.59 NA NA 93.10 NA NA NA 100.00 NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA 96.67 96.88 NA NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA 95.45 100.00 NA NA NA NA NA NA NA NA 96.15 K jcn_only_AD CG14939,RI_chr2L_11812683_11813150 chr2L - chr2L_11812683_11813633;chr2L_11812683_11813150 chr2L_11812683_11813724 chr2L_11812583_11812682;chr2L_11813725_11813792 93.33 82.86 95.24 95.00 97.44 92.86 94.29 89.41 93.83 NA 95.77 95.15 97.67 97.06 93.33 94.29 95.56 96.00 93.55 92.86 97.14 85.71 NA NA NA 92.16 NA NA 79.17 NA 95.24 80.65 93.33 92.86 NA NA 90.48 86.36 88.00 90.91 NA 97.17 96.00 75.00 95.24 NA NA 90.32 95.10 NA NA 85.19 NA NA 93.22 NA 91.30 92.59 K intron_retention NUCB1,RI_chr3L_17794900_17794991 chr3L - chr3L_17791066_17791126 chr3L_17791065_17791066;chr3L_17791126_17791127 chr3L_17790968_17791065;chr3L_17791127_17792652 99.36 99.17 98.71 99.10 98.70 99.04 99.68 98.86 98.66 97.92 100.00 98.36 99.24 99.40 99.29 99.73 99.36 99.20 99.55 100.00 100.00 96.23 100.00 99.25 98.81 99.12 98.77 100.00 98.91 100.00 100.00 100.00 98.04 99.06 100.00 100.00 98.99 100.00 98.95 100.00 98.94 99.65 100.00 99.26 99.03 99.41 98.48 100.00 99.73 100.00 98.77 100.00 100.00 100.00 100.00 98.54 99.55 99.40 K intron_retention I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,I_chr3R_17183927_17184513,I_chr3R_17183927_17185306,RI_chr3R_17184319_17184513,I_chr3R_17184319_17185084,I_chr3R_17184319_17185284,noncoding_18168,RI_chr3R_17184792_17185306,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,RI_chr3R_17189607_17189988,I_chr3R_17190098_17190207,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17183927_17200781 chr3R_17183926_17183927;chr3R_17200781_17200782 chr3R_17183827_17183926;chr3R_17200782_17200881 6.67 5.71 9.52 10.00 10.00 18.75 12.50 27.59 8.70 NA 0.00 12.82 12.50 11.11 9.38 0.00 NA 9.09 11.11 5.17 6.67 23.08 9.68 0.00 5.88 NA 9.52 NA 0.00 4.35 20.00 0.00 3.64 6.90 10.53 8.33 5.00 8.33 4.88 6.12 4.35 11.54 5.88 0.00 0.00 4.17 0.00 5.45 17.95 0.00 14.63 13.33 0.00 6.25 0.00 5.71 9.52 0.00 K intron_retention TepIV,EI_chr2L_19548696_19549582 chr2L + chr2L_19552900_19552955 chr2L_19552899_19552900;chr2L_19552955_19552956 chr2L_19552473_19552899;chr2L_19552956_19553293 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention noncoding_13497,I_chr3L_19480207_19480774,I_chr3L_19480345_19480774 chr3L - chr3L_19480868_19481069 chr3L_19480867_19480868;chr3L_19481069_19481070 chr3L_19480775_19480867;chr3L_19481070_19481429 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 13.79 0.00 0.00 NA NA 0.00 NA 0.00 NA NA NA 14.29 NA NA NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA 6.25 NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention SF2,noncoding_17171,R_chr3R_12165489_12165639 chr3R - chr3R_12165578_12165633 chr3R_12165577_12165578;chr3R_12165633_12165634 chr3R_12165059_12165577;chr3R_12165634_12165733 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG11148,I_chr4_876247_876311,I_chr4_882005_882418,RI_chr4_886921_887162 chr4 - chr4_876262_876311 chr4_876261_876262;chr4_876311_876312 chr4_876044_876261;chr4_876312_876411 5.74 2.13 7.50 19.48 8.33 5.41 7.41 11.76 6.00 NA 0.00 9.76 10.81 2.13 9.09 11.90 10.00 6.67 7.69 8.42 0.00 0.00 10.17 4.00 4.00 7.69 12.50 19.05 0.00 0.00 5.77 5.71 0.00 8.05 6.06 14.71 0.00 2.56 0.00 2.22 17.86 3.23 0.00 0.00 6.67 4.65 0.00 5.00 7.00 3.37 2.60 11.11 0.00 5.71 9.80 3.70 10.67 4.65 K alternative_acceptor msn,I_chr3L_2558033_2560115,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2558393_2560115;chr3L_2558390_2560115 chr3L_2558036_2560115 chr3L_2560116_2560215;chr3L_2557936_2558035 21.34 19.91 26.29 16.70 19.53 26.43 41.24 20.00 15.56 25.90 19.06 20.36 9.38 19.45 23.49 17.96 12.93 16.15 13.23 23.86 17.96 13.71 22.69 23.54 21.74 18.90 22.93 31.28 12.16 20.52 20.00 21.53 21.85 20.96 23.12 25.16 13.65 29.18 20.67 19.57 28.51 21.43 21.20 16.14 25.25 23.78 27.22 16.95 19.24 25.57 25.63 25.47 25.25 25.93 21.34 23.10 29.07 21.12 K intron_retention Mob2,RI_chr3L_11520443_11527440,CE_chr3L_11520917_11527526,RE_chr3L_11520925_11527489,RI_chr3L_11535932_11545929 chr3L - chr3L_11518614_11518679 chr3L_11518613_11518614;chr3L_11518679_11518680 chr3L_11517457_11518613;chr3L_11518680_11518776 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 1.76 3.32 0.34 0.00 0.43 0.00 0.35 0.66 1.05 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.45 0.00 0.00 K jcn_only_AA cdc2c,RI_chr3R_16562395_16562445 chr3R + chr3R_16562395_16562453 chr3R_16562395_16562445 chr3R_16562295_16562394;chr3R_16562454_16562545 4.35 NA NA NA NA NA NA 4.35 0.00 NA NA 16.00 NA NA NA NA NA NA NA 4.65 NA NA NA NA NA NA NA NA NA NA NA NA NA 9.52 NA NA NA NA 4.55 NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA K alternative_acceptor CG8116,I_chr3R_4542126_4542214,RI_chr3R_4542291_4542625,RI_chr3R_4542291_4542652,I_chr3R_4542561_4542617,I_chr3R_4545118_4545525 chr3R + chr3R_4542291_4542617;chr3R_4542291_4542625 chr3R_4542291_4542622 chr3R_4542215_4542290;chr3R_4542626_4542717 22.22 NA 20.00 20.00 33.33 NA 9.09 25.00 31.25 12.50 33.33 11.11 20.00 NA 0.00 16.67 33.33 22.22 16.67 29.41 28.57 21.74 25.00 25.00 NA NA 28.57 15.79 18.18 16.67 16.67 21.43 16.67 33.33 33.33 12.50 22.22 NA 25.00 28.00 33.33 21.43 NA 25.00 30.00 23.53 20.00 25.00 33.33 25.00 11.11 NA 16.67 NA 42.86 NA NA 15.00 K alternative_donor CkIalpha,I_chrX_12548371_12549203,I_chrX_12548704_12549203,I_chrX_12548772_12549203 chrX + chrX_12548828_12549203 chrX_12549003_12549203 chrX_12549204_12549210;chrX_12548759_12548827 66.67 NA NA 66.67 NA NA 77.78 62.50 100.00 NA NA 80.00 NA NA NA NA NA NA 60.00 60.00 NA 60.00 NA NA NA NA NA NA NA NA NA NA 83.33 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA 66.67 NA NA NA K intron_retention CG30349,lin chr2R + chr2R_4795402_4795454 chr2R_4795401_4795402;chr2R_4795454_4795455 chr2R_4794951_4795401;chr2R_4795455_4795984 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8178392_8178458 chr2L_8178398_8178458 chr2L_8178459_8178951;chr2L_8177779_8178391 99.57 100.00 99.60 99.72 99.56 100.00 99.21 99.23 99.71 100.00 99.34 99.56 99.56 99.52 100.00 100.00 99.57 100.00 99.56 99.49 100.00 99.40 99.49 99.00 100.00 99.48 99.51 99.57 99.52 100.00 100.00 100.00 99.50 99.74 100.00 99.25 100.00 99.01 99.78 100.00 98.04 100.00 100.00 99.80 100.00 100.00 98.62 99.09 99.49 99.58 99.34 98.99 99.34 98.06 99.59 100.00 99.48 100.00 N intron_retention CG12576,RI_chrX_21878289_21882347,I_chrX_21882735_21883714 chrX - chrX_21880638_21882347 chrX_21880637_21880638;chrX_21882347_21882348 chrX_21880570_21880637;chrX_21882348_21882447 5.41 0.00 0.00 NA NA NA 17.65 0.00 8.89 NA 0.00 7.69 12.50 10.71 0.00 0.00 5.88 NA NA 10.81 NA 22.73 0.00 0.00 NA NA 3.57 NA 0.00 7.14 6.67 NA 0.00 10.71 5.56 10.53 14.29 NA 0.00 9.38 NA 6.12 6.67 0.00 9.52 0.00 4.55 5.26 4.35 4.76 10.53 NA 0.00 NA 9.09 7.41 0.00 0.00 K intron_retention nes chr3L - chr3L_19253331_19253676 chr3L_19253330_19253331;chr3L_19253676_19253677 chr3L_19253215_19253330;chr3L_19253677_19253699 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA K intron_retention CG32176,RI_chr3L_17427238_17427301 chr3L + chr3L_17429478_17429612 chr3L_17429477_17429478;chr3L_17429612_17429613 chr3L_17429424_17429477;chr3L_17429613_17430643 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 17.65 K cassette Atpalpha,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16792336_16798894;chr3R_16792336_16794113 chr3R_16792336_16792829;chr3R_16792925_16798894,chr3R_16792925_16794113 chr3R_16792830_16792924 chr3R_16792236_16792335;chr3R_16798895_16798994 99.21 99.08 99.33 97.67 98.81 99.60 99.72 99.07 98.94 100.00 98.17 99.14 97.21 99.62 99.67 100.00 99.56 97.72 99.63 98.91 100.00 99.07 99.72 99.15 98.88 99.21 99.66 91.00 97.33 99.49 99.68 99.28 98.54 99.53 99.54 96.84 99.05 98.48 96.69 98.04 99.41 99.29 99.55 99.18 99.09 99.27 98.15 98.94 99.81 99.72 98.92 98.19 99.45 99.22 99.44 98.73 99.66 99.33 K intron_retention CG8596,RI_chr3L_7335271_7335405,I_chr3L_7336128_7336203,RI_chr3L_7336707_7336767,I_chr3L_7337046_7338155,I_chr3L_7340885_7340945 chr3L - chr3L_7335271_7335335 chr3L_7335270_7335271;chr3L_7335335_7335336 chr3L_7335171_7335270;chr3L_7335336_7335932 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor pnr,RI_chr3R_11852561_11855192 chr3R + chr3R_11864921_11864991 chr3R_11864930_11864991 chr3R_11864992_11865268;chr3R_11864309_11864920 70.67 66.67 65.33 72.64 70.00 69.75 69.87 70.67 71.28 74.51 75.18 72.12 76.24 71.57 74.52 64.75 78.23 68.32 70.49 68.42 72.54 67.50 74.89 70.98 72.95 68.03 68.97 73.03 71.58 70.45 71.55 71.01 78.31 68.31 73.08 66.67 70.50 65.92 68.69 73.86 80.38 71.15 72.73 65.41 69.46 74.86 74.07 76.30 68.69 64.92 71.43 66.67 68.68 66.46 69.44 63.13 70.62 76.47 K intron_retention Eps-15,I_chr2R_20660319_20660496 chr2R - chr2R_20657585_20659247 chr2R_20657584_20657585;chr2R_20659247_20659248 chr2R_20657212_20657584;chr2R_20659248_20659313 17.95 16.67 17.19 8.51 18.42 23.40 30.00 20.27 18.00 16.18 29.27 21.10 27.27 15.56 28.57 12.20 22.92 20.00 22.73 22.22 26.67 15.31 12.62 14.85 16.98 11.48 14.89 19.05 26.19 7.20 18.18 21.70 9.25 17.95 21.95 3.74 12.80 16.28 16.13 17.80 22.16 21.31 14.00 13.48 17.68 20.71 20.93 17.44 24.76 19.23 17.92 17.14 10.64 22.89 22.22 20.18 17.27 11.33 K multi_cassette Ten-m,EI_chr3L_22298865_22299141,I_chr3L_22300015_22300646,I_chr3L_22374182_22399991 chr3L - chr3L_22296709_22300646 chr3L_22296709_22296798;chr3L_22297211_22297345;chr3L_22297630_22298066;chr3L_22298865_22300646 chr3L_22296799_22297210;chr3L_22297346_22297629;chr3L_22298067_22298864 chr3L_22296163_22296708;chr3L_22300647_22300652 90.91 85.71 85.71 53.33 100.00 100.00 85.71 80.00 78.95 100.00 100.00 94.12 80.00 83.33 100.00 87.50 83.33 100.00 100.00 82.35 83.33 100.00 93.75 77.78 100.00 100.00 69.23 100.00 80.00 90.91 83.33 100.00 88.89 85.71 100.00 90.91 80.95 75.00 90.91 100.00 100.00 78.95 100.00 87.50 100.00 66.67 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 90.00 100.00 100.00 66.67 K cassette trol,I_chrX_2387249_2389980,I_chrX_2391522_2395659 chrX - chrX_2387249_2389073;chrX_2387249_2393243;chrX_2387249_2392054;chrX_2387249_2395659 chrX_2387249_2388436;chrX_2388671_2392054,chrX_2388671_2393243,chrX_2388671_2395659,chrX_2388671_2389073 chrX_2388437_2388670 chrX_2387149_2387248;chrX_2395660_2395759 10.07 13.64 8.11 2.83 8.00 7.14 4.55 9.80 11.50 14.29 5.71 19.25 5.00 10.45 8.65 6.76 12.16 10.00 8.51 11.67 5.26 9.80 11.43 12.24 14.63 11.94 9.09 22.22 10.00 7.81 9.52 15.00 6.14 9.40 8.33 13.33 11.61 15.56 11.96 11.54 11.11 10.06 8.57 21.43 27.78 7.69 NA 10.07 7.11 0.00 10.53 12.82 11.67 NA 11.40 10.53 5.26 12.07 K intron_retention CG12224 chr3R - chr3R_7806577_7806733 chr3R_7806576_7806577;chr3R_7806733_7806734 chr3R_7806554_7806576;chr3R_7806734_7807272 0.00 0.00 NA 12.50 NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA 11.11 NA NA NA 4.35 NA NA 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 4.35 0.00 NA 0.00 0.00 0.00 0.00 5.56 K intron_retention dpr17 chr3R + chr3R_7936756_7936809 chr3R_7936755_7936756;chr3R_7936809_7936810 chr3R_7936554_7936755;chr3R_7936810_7937080 98.00 96.30 100.00 100.00 100.00 94.12 93.33 95.83 100.00 88.89 90.91 100.00 100.00 96.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 88.24 100.00 96.88 94.44 100.00 100.00 100.00 93.33 93.33 100.00 100.00 96.00 100.00 95.24 100.00 100.00 93.75 96.97 96.97 96.67 100.00 100.00 100.00 92.31 97.30 96.88 100.00 97.78 96.77 97.50 94.74 100.00 100.00 100.00 96.88 98.00 94.44 K jcn_only_AD LSm7 chr2L - chr2L_16742443_16742625;chr2L_16742443_16742662 chr2L_16742443_16742634 chr2L_16742326_16742442;chr2L_16742663_16742986 2.51 4.55 1.30 2.90 4.84 1.49 0.78 2.91 0.56 5.13 5.08 1.94 1.23 1.89 2.60 1.98 4.08 2.30 4.04 3.30 3.23 0.00 5.41 2.27 2.08 4.55 0.00 5.19 0.00 0.00 0.00 2.22 5.17 0.73 0.00 NA 2.97 2.50 2.52 4.94 0.00 2.90 3.12 4.41 6.00 4.26 2.46 8.33 3.12 0.00 0.00 1.96 0.00 0.00 6.31 0.96 3.83 4.48 K intron_retention CG7878,I_chr3R_3952846_3953762 chr3R + chr3R_3950488_3950544 chr3R_3950487_3950488;chr3R_3950544_3950545 chr3R_3949852_3950487;chr3R_3950545_3950995 0.78 0.00 0.58 4.15 0.00 0.00 1.03 0.89 1.42 0.00 0.75 1.75 0.00 0.00 2.34 1.03 0.00 0.60 0.00 1.09 0.00 1.19 2.82 1.01 0.00 2.33 6.55 6.06 0.79 0.88 0.00 0.00 2.48 2.03 0.00 3.76 0.00 1.32 0.80 0.42 4.39 0.00 0.00 1.33 0.47 1.16 0.00 0.78 1.35 0.00 1.00 0.00 0.00 0.00 0.00 0.97 0.34 1.14 N jcn_only_AA CG2201 chr2L - chr2L_21618111_21623365 chr2L_21623130_21623365 chr2L_21623366_21623540;chr2L_21618011_21618110 34.11 37.50 0.00 0.00 NA NA 35.14 40.38 29.51 NA NA 0.00 NA 0.00 0.00 38.10 33.33 NA 0.00 38.89 50.00 NA 36.67 0.00 NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA 0.00 NA 40.00 0.00 NA NA 47.83 NA NA 34.88 NA NA NA NA NA 40.00 NA 37.04 NA K jcn_only_AA CG1116 chr3R + chr3R_1045578_1045640 chr3R_1045578_1045637 chr3R_1045416_1045577;chr3R_1045641_1045855 39.65 40.74 38.10 30.00 NA 30.00 37.50 51.52 42.86 NA NA 42.86 NA NA 25.00 NA NA 32.00 NA 41.38 NA 47.62 27.78 45.95 21.74 35.48 41.18 NA NA 31.25 NA 39.47 56.52 38.24 46.67 39.62 32.14 38.71 39.68 43.75 NA 53.57 35.00 35.00 32.56 34.09 40.00 NA 37.50 35.29 46.94 NA 40.48 48.21 47.83 51.28 52.00 41.94 K intron_retention Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_136631_137445 chr4_136630_136631;chr4_137445_137446 chr4_136241_136630;chr4_137446_139127 97.95 100.00 91.43 100.00 100.00 95.65 98.68 98.78 98.15 100.00 95.00 97.26 100.00 100.00 100.00 97.75 96.97 96.00 100.00 98.39 95.24 100.00 96.77 100.00 100.00 94.44 100.00 NA 75.00 100.00 97.50 100.00 96.97 97.14 96.43 96.00 100.00 100.00 94.12 100.00 97.56 96.30 97.30 96.67 100.00 98.39 96.15 94.44 100.00 100.00 94.44 96.15 94.44 100.00 100.00 100.00 93.18 97.06 K intron_retention CG1544 chr3R + chr3R_27026288_27026630 chr3R_27026287_27026288;chr3R_27026630_27026631 chr3R_27026126_27026287;chr3R_27026631_27026704 0.00 NA 0.00 NA NA 0.00 NA 5.88 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA 5.56 NA NA NA NA NA NA NA 9.09 NA NA NA 0.00 NA NA 8.00 NA NA NA NA NA 5.56 NA NA NA K intron_retention CG9007,I_chr3L_13995402_13996269,I_chr3L_13995402_13996272,I_chr3L_13995402_13996296,I_chr3L_13995480_13996292,RI_chr3L_14010982_14011111 chr3L + chr3L_13995402_13996292 chr3L_13995401_13995402;chr3L_13996292_13996293 chr3L_13995380_13995401;chr3L_13996293_13996360 7.14 NA NA 0.00 NA NA 0.00 12.50 8.33 NA NA 7.69 NA NA 7.14 8.57 NA NA 7.14 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 22.22 5.56 NA NA NA NA NA NA 8.70 NA NA NA NA NA 9.09 7.14 NA NA NA NA NA 6.67 NA NA NA K intron_retention srp,I_chr3R_11826508_11826910 chr3R + chr3R_11828046_11828592 chr3R_11828045_11828046;chr3R_11828592_11828593 chr3R_11827892_11828045;chr3R_11828593_11829749 100.00 100.00 100.00 99.24 98.57 98.28 98.88 100.00 100.00 100.00 98.77 99.38 100.00 100.00 97.94 100.00 98.72 98.75 100.00 99.53 98.73 100.00 98.92 98.33 100.00 98.48 96.61 98.44 99.04 100.00 98.88 100.00 99.50 99.21 100.00 100.00 100.00 100.00 98.77 99.25 100.00 98.82 100.00 100.00 100.00 100.00 100.00 99.53 100.00 100.00 98.72 100.00 100.00 98.48 100.00 98.65 100.00 100.00 K jcn_only_AA mub,RI_chr3L_21901021_21901163,I_chr3L_21908756_21909179 chr3L + chr3L_21901021_21907875 chr3L_21901021_21901163 chr3L_21900921_21901020;chr3L_21907876_21907932 0.00 2.17 1.64 0.00 2.70 0.00 0.00 0.00 0.83 0.00 6.25 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 4.35 0.00 5.00 0.00 0.00 2.44 NA 5.88 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 2.70 0.00 4.55 0.00 0.00 0.00 NA 3.12 3.23 0.00 0.00 8.00 0.00 0.00 NA NA 0.00 3.57 0.00 0.00 K intron_retention Zyx102EF,I_chr4_1079131_1080044,I_chr4_1079946_1080044,RI_chr4_1079959_1080044,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1079915_1080044 chr4_1079914_1079915;chr4_1080044_1080045 chr4_1079859_1079914;chr4_1080045_1080072 36.84 33.33 30.00 40.48 25.00 35.71 74.07 33.33 37.74 NA 30.77 47.22 42.86 41.18 31.82 32.14 38.10 33.33 33.33 36.84 36.36 NA 33.33 53.85 41.67 40.00 35.71 NA NA NA 28.57 NA NA 32.56 NA 78.57 36.36 70.00 NA 36.84 NA 42.50 29.17 30.77 NA 50.00 41.67 NA 39.13 NA 50.00 57.14 50.00 NA 39.13 33.33 29.41 11.11 K intron_retention RpS7,E_chr3R_26032339_26034298,I_chr3R_26032444_26033815,snoRNA:Psi28S-2149,snoRNA:Psi18S-1377e,snoRNA:Psi18S-1377d,snoRNA:Psi18S-1377c,snoRNA:Psi18S-1377b,snoRNA:Psi18S-1377a,snoRNA:Psi28S-2626 chr3R - chr3R_26032444_26033814 chr3R_26032443_26032444;chr3R_26033814_26033815 chr3R_26032344_26032443;chr3R_26033815_26034147 0.03 0.02 0.03 0.05 0.03 0.02 0.04 0.03 0.04 0.04 0.10 0.04 0.04 0.01 0.05 0.04 0.03 0.07 0.02 0.06 0.05 0.00 0.03 0.02 0.03 0.03 0.04 0.11 0.05 0.02 0.02 0.00 0.00 0.03 0.02 0.02 0.02 0.03 0.01 0.01 0.01 0.04 0.06 0.02 0.02 0.02 0.03 0.05 0.07 0.02 0.02 0.02 0.03 0.01 0.03 0.02 0.01 0.04 K intron_retention CG11063,CE_chrX_13722771_13723819 chrX - chrX_13721753_13722674 chrX_13721752_13721753;chrX_13722674_13722675 chrX_13721612_13721752;chrX_13722675_13722770 1.64 2.73 0.00 1.79 0.00 0.00 0.00 0.00 1.64 0.00 0.00 2.06 3.23 8.57 0.00 0.00 0.00 0.00 0.00 2.03 0.00 3.73 1.65 1.43 5.63 0.00 2.70 0.00 4.55 0.00 0.00 2.78 3.74 0.00 2.50 2.44 3.09 1.75 2.76 3.62 0.00 0.97 0.00 3.57 0.00 3.39 1.45 1.98 3.06 5.22 2.02 0.00 1.83 1.68 0.00 2.15 1.42 0.00 K alternative_acceptor mthl10 chr3L - chr3L_333641_333941 chr3L_333717_333941 chr3L_333942_334119;chr3L_333522_333640 3.81 1.39 2.74 5.71 5.88 1.67 10.42 4.21 5.22 0.00 5.13 3.81 9.09 5.77 4.55 3.03 1.96 3.39 5.00 4.24 4.44 4.55 4.17 3.39 6.67 5.26 3.77 5.56 11.11 5.00 2.22 2.78 4.35 2.60 6.90 4.76 4.41 1.85 2.91 4.12 0.00 3.67 3.92 1.39 3.39 6.00 0.00 7.32 3.70 2.13 2.74 3.45 0.00 0.00 6.58 1.79 1.61 0.00 K intron_retention Hsp60,E_chrX_11004167_11004862 chrX + chrX_11005445_11005507 chrX_11005444_11005445;chrX_11005507_11005508 chrX_11004074_11005444;chrX_11005508_11005811 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.11 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Amph,I_chr2R_8498227_8498492 chr2R + chr2R_8497142_8498083 chr2R_8497142_8497246;chr2R_8497382_8498083 chr2R_8497247_8497381 chr2R_8496734_8497141;chr2R_8498084_8498226 2.94 0.00 0.00 4.00 4.17 0.00 7.41 7.69 1.79 NA 44.44 3.23 3.33 5.26 0.00 0.00 0.00 2.94 2.38 1.59 25.00 NA 0.00 0.00 NA 4.55 0.00 NA 9.09 5.56 4.17 NA 0.00 5.56 NA 0.00 0.00 0.00 0.00 8.70 NA 4.00 2.94 2.94 0.00 NA 0.00 5.00 3.33 5.56 4.76 NA 7.69 NA 3.23 0.00 NA 0.00 K jcn_only_AA eIF5,noncoding_24049,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15885411_15885854 chrX_15885416_15885854 chrX_15885855_15885912;chrX_15885316_15885410 93.47 NA 100.00 NA NA NA 93.75 93.33 93.10 NA NA 97.22 NA 100.00 NA 91.67 NA NA NA 96.15 NA NA NA NA NA NA NA NA NA NA 91.43 NA NA 91.30 NA 90.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA 93.62 NA NA NA NA NA NA NA NA 91.67 K alternative_acceptor f-cup,I_chr3R_9524004_9524059,EI_chr3R_9524613_9524789 chr3R - chr3R_9521865_9521924 chr3R_9521872_9521924 chr3R_9521925_9522068;chr3R_9521683_9521864 100.00 100.00 100.00 95.24 100.00 100.00 100.00 95.24 100.00 NA 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Vps13,I_chr2R_3464510_3464571 chr2R + chr2R_3464510_3464571 chr2R_3464510_3464566 chr2R_3464410_3464509;chr2R_3464572_3464671 100.00 100.00 92.86 95.24 100.00 100.00 100.00 97.37 100.00 NA 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 NA 100.00 88.89 NA 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 96.97 100.00 95.24 87.50 100.00 NA 96.15 97.22 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 96.97 K cassette CG34325,I_chrX_16609323_16614744,I_chrX_16613170_16614744 chrX - chrX_16609323_16614744 chrX_16609323_16610470;chrX_16610696_16614744 chrX_16610471_16610695 chrX_16609223_16609322;chrX_16614745_16614802 100.00 100.00 100.00 94.44 100.00 92.86 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 97.67 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 K intron_retention XRCC1 chrX + chrX_5225653_5225714 chrX_5225652_5225653;chrX_5225714_5225715 chrX_5225564_5225652;chrX_5225715_5226043 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 1.01 0.00 0.00 2.44 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 1.59 1.39 2.67 0.00 0.00 1.54 8.51 8.51 0.00 0.00 0.00 0.00 3.17 0.00 0.00 2.08 0.00 0.00 2.35 0.00 1.05 0.00 0.00 0.00 2.99 0.00 0.00 1.32 4.94 0.00 0.00 0.00 0.00 0.00 0.00 1.47 1.61 K intron_retention sxc,I_chr2R_1203985_1205289,I_chr2R_1208121_1213310,I_chr2R_1213177_1213308 chr2R + chr2R_1194858_1194918 chr2R_1194857_1194858;chr2R_1194918_1194919 chr2R_1194848_1194857;chr2R_1194919_1195157 47.06 NA 54.55 39.29 NA 81.82 20.00 51.61 45.95 NA 41.67 47.83 18.52 61.54 30.77 64.86 46.15 NA 45.83 47.06 NA NA NA NA NA 25.00 77.78 NA NA NA 41.67 NA NA 62.50 NA NA NA NA NA 63.64 NA 53.85 46.15 NA NA NA NA 53.85 50.00 NA NA NA NA NA 42.86 NA NA NA K intron_retention CG12703 chrX + chrX_19651002_19651066 chrX_19651001_19651002;chrX_19651066_19651067 chrX_19650904_19651001;chrX_19651067_19651530 0.00 0.00 0.00 0.00 0.00 0.95 0.65 0.00 0.42 0.00 2.27 0.00 0.00 0.00 0.72 0.00 1.23 0.00 0.00 0.61 0.00 3.12 0.00 0.00 0.00 4.62 3.15 1.30 3.39 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.52 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754284_15755172;chrX_15754284_15755021;chrX_15754284_15755184;chrX_15754284_15755409;chrX_15754284_15755256;chrX_15754284_15754777;chrX_15754284_15755416;chrX_15754284_15755268 chrX_15754284_15755148 chrX_15754256_15754283 0.00 0.85 0.76 0.46 0.00 0.00 0.80 0.41 0.00 1.49 0.00 0.00 0.00 0.00 0.85 0.27 0.00 0.00 0.00 0.34 0.00 1.33 0.00 0.90 1.02 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 1.74 0.00 1.82 0.33 0.00 0.71 0.00 0.00 0.00 0.00 1.02 0.00 0.00 K alternative_donor lok,I_chr2L_20063155_20063377,RI_chr2L_20063248_20063377 chr2L + chr2L_20063172_20063377 chr2L_20063248_20063377 chr2L_20063378_20063477;chr2L_20063148_20063171 1.37 3.08 2.56 6.15 0.00 2.70 0.00 5.00 3.37 0.00 5.26 0.00 0.00 4.35 1.61 2.17 0.00 1.69 0.00 2.44 0.00 0.00 1.37 2.00 0.00 0.00 3.03 8.33 3.51 1.89 1.92 0.00 1.82 1.59 0.00 0.00 0.00 1.72 1.32 0.98 1.39 2.35 0.00 2.04 0.00 0.00 1.39 0.00 2.56 1.41 2.99 0.00 0.00 0.00 0.00 0.00 0.00 1.14 K intron_retention CG30187,F_chr2R_18805721_18805778,I_chr2R_18820842_18820922 chr2R - chr2R_18806035_18806090 chr2R_18806034_18806035;chr2R_18806090_18806091 chr2R_18805989_18806034;chr2R_18806091_18806313 2.22 0.00 5.00 1.72 2.63 5.56 3.28 7.04 5.22 0.00 0.00 3.51 6.00 2.94 2.56 6.52 6.52 0.00 2.22 1.83 0.00 5.71 0.00 0.00 0.00 0.00 2.78 0.00 3.12 0.00 1.82 3.57 0.00 5.26 9.09 0.00 2.60 0.00 1.32 5.26 12.00 6.56 12.50 1.77 13.64 0.00 0.00 8.57 10.94 1.59 0.00 0.00 0.00 0.00 2.04 2.13 4.00 12.00 K intron_retention CG12734,I_chr3L_3183812_3183932,I_chr3L_3184645_3185360 chr3L + chr3L_3183998_3184251 chr3L_3183997_3183998;chr3L_3184251_3184252 chr3L_3183933_3183997;chr3L_3184252_3184644 93.33 87.50 NA 83.33 NA NA 100.00 93.33 94.44 NA NA 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 96.55 NA 89.47 93.33 100.00 92.31 NA 94.44 92.86 100.00 87.50 NA 90.91 92.86 100.00 94.44 90.91 86.36 90.91 95.65 81.82 88.89 94.74 NA 100.00 91.67 85.71 100.00 93.33 100.00 93.33 95.65 100.00 92.86 93.33 NA 100.00 83.33 NA K cassette exba,I_chr3R_1423660_1424665,I_chr3R_1424091_1424665,I_chr3R_1425087_1425925,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1423660_1424665 chr3R_1423660_1423925;chr3R_1424065_1424665 chr3R_1423926_1424064 chr3R_1423560_1423659;chr3R_1424666_1424765 99.90 99.81 99.83 99.90 100.00 100.00 99.75 100.00 99.91 100.00 100.00 99.88 99.77 100.00 99.82 100.00 100.00 100.00 100.00 100.00 99.80 99.72 99.87 100.00 99.76 100.00 100.00 100.00 99.70 100.00 99.82 100.00 99.83 99.90 100.00 99.74 99.85 99.82 99.86 99.58 99.79 99.91 99.76 99.83 100.00 99.83 100.00 99.75 99.91 99.85 99.86 100.00 100.00 99.77 99.85 100.00 100.00 99.53 K jcn_only_AD achi,I_chr2R_8401767_8401934 chr2R - chr2R_8401767_8401848;chr2R_8401767_8402280 chr2R_8401767_8401934 chr2R_8401667_8401766;chr2R_8402281_8402519 4.76 0.00 NA 0.00 4.55 NA 4.76 7.41 10.81 NA NA 7.89 NA NA 11.54 4.55 8.70 NA 9.52 4.08 8.70 NA 8.11 9.38 20.83 4.17 NA NA 4.76 4.35 10.00 0.00 5.88 10.00 NA 0.00 6.06 NA 6.45 0.00 NA 7.89 5.00 NA 0.00 2.70 4.17 4.00 10.34 1.75 8.82 NA NA 0.00 4.55 0.00 4.17 0.00 K intron_retention Vha68-2 chr2L + chr2L_12977910_12977976 chr2L_12977909_12977910;chr2L_12977976_12977977 chr2L_12976932_12977909;chr2L_12977977_12978151 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention vig2 chr3R + chr3R_20950813_20950905 chr3R_20950812_20950813;chr3R_20950905_20950906 chr3R_20950756_20950812;chr3R_20950906_20950919 100.00 100.00 99.73 100.00 99.57 100.00 100.00 100.00 100.00 100.00 99.60 100.00 100.00 100.00 99.75 99.65 100.00 100.00 99.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.67 100.00 99.84 100.00 100.00 100.00 100.00 99.81 99.86 99.82 100.00 99.83 100.00 99.72 100.00 100.00 100.00 100.00 100.00 100.00 99.80 100.00 100.00 100.00 99.71 100.00 99.86 100.00 K cassette CG31997,I_chr4_175592_176390 chr4 - chr4_175592_176390 chr4_175592_175652;chr4_175774_176390 chr4_175653_175773 chr4_175514_175591;chr4_176391_176490 99.51 99.46 98.80 97.77 100.00 100.00 99.59 99.61 99.73 98.21 100.00 99.66 100.00 99.43 99.46 99.66 99.34 99.29 99.51 99.43 99.25 100.00 98.97 99.46 100.00 99.27 100.00 98.97 98.78 100.00 100.00 99.03 100.00 99.64 99.31 98.85 100.00 98.36 100.00 99.58 99.12 99.68 100.00 99.48 100.00 99.56 100.00 100.00 99.66 99.70 99.36 99.33 99.08 99.38 99.51 99.48 98.68 100.00 K intron_retention Patj,CG12022 chr3L + chr3L_1798924_1798981 chr3L_1798923_1798924;chr3L_1798981_1798982 chr3L_1798831_1798923;chr3L_1798982_1800699 73.08 83.33 76.47 74.07 71.43 80.00 68.42 94.12 72.41 NA 57.14 73.08 NA 69.23 73.68 61.11 83.33 50.00 55.00 86.21 50.00 60.87 66.67 73.33 93.75 92.31 87.50 83.33 73.08 64.29 73.33 66.67 63.16 65.00 80.00 94.44 65.00 80.00 57.89 64.00 87.50 80.00 87.50 75.00 75.00 80.00 70.00 70.59 71.43 NA 68.18 69.23 71.43 46.15 78.95 87.50 83.33 63.16 K alternative_acceptor CG3683 chr2R + chr2R_20551970_20552038 chr2R_20551970_20552030 chr2R_20551911_20551969;chr2R_20552039_20552202 100.00 NA 100.00 100.00 100.00 92.86 88.89 88.89 100.00 NA NA 90.00 NA NA 100.00 100.00 100.00 100.00 100.00 93.33 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA 88.89 NA NA NA NA NA NA NA 94.74 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA 100.00 K intron_retention Mnn1 chr2L + chr2L_7057675_7057863 chr2L_7057674_7057675;chr2L_7057863_7057864 chr2L_7057348_7057674;chr2L_7057864_7058325 0.00 NA NA NA NA NA NA 0.00 5.26 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 18.75 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention l(1)G0269,I_chrX_21192541_21192931 chrX - chrX_21192541_21192663 chrX_21192540_21192541;chrX_21192663_21192664 chrX_21192441_21192540;chrX_21192664_21192846 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 2.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD shep,I_chr3L_5157070_5160067,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5157076_5160067 chr3L_5157076_5160034 chr3L_5156934_5157075;chr3L_5160068_5160159 98.17 98.86 100.00 97.14 95.19 96.84 95.80 98.31 97.28 98.67 98.20 98.19 99.04 98.06 97.39 97.06 98.02 99.02 94.31 99.39 95.19 97.92 97.41 99.02 98.63 97.39 99.19 100.00 98.63 100.00 99.00 100.00 96.84 98.71 98.67 97.26 99.14 100.00 97.53 96.62 95.56 97.84 100.00 98.77 97.96 92.86 100.00 NA 98.13 100.00 96.52 96.97 98.15 100.00 100.00 98.15 98.46 92.21 K intron_retention CG31012,I_chr3R_26643930_26646602 chr3R + chr3R_26650056_26650114 chr3R_26650055_26650056;chr3R_26650114_26650115 chr3R_26650000_26650055;chr3R_26650115_26650608 100.00 100.00 100.00 100.00 99.15 99.34 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.26 100.00 100.00 100.00 100.00 99.46 100.00 100.00 99.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.64 100.00 100.00 100.00 99.62 100.00 99.72 99.74 100.00 99.76 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.59 99.64 100.00 100.00 100.00 100.00 100.00 100.00 99.64 K intron_retention CG1494 chrX + chrX_21160203_21160429 chrX_21160202_21160203;chrX_21160429_21160430 chrX_21159750_21160202;chrX_21160430_21160770 2.04 0.00 4.00 10.61 1.89 3.64 1.37 7.41 5.45 0.00 7.89 4.65 4.17 9.76 3.39 8.33 0.00 0.00 8.51 2.44 2.08 12.50 5.06 4.00 0.00 0.00 1.98 0.00 6.25 6.00 2.22 0.00 0.00 2.70 0.00 4.88 3.70 5.77 2.75 1.59 0.00 2.04 0.00 1.32 0.00 0.00 0.00 0.00 2.25 0.00 6.35 4.44 0.00 0.00 1.69 0.00 0.00 0.00 K intron_retention CG6686 chr2L - chr2L_11987388_11987471 chr2L_11987387_11987388;chr2L_11987471_11987472 chr2L_11986438_11987387;chr2L_11987472_11987482 13.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 18.75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA K intron_retention Rcd5 chr3L + chr3L_4040904_4040966 chr3L_4040903_4040904;chr3L_4040966_4040967 chr3L_4040501_4040903;chr3L_4040967_4041105 0.00 0.00 6.38 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 1.35 3.03 0.00 4.08 2.38 5.56 6.25 14.58 0.00 3.85 0.00 2.38 4.23 0.00 0.00 0.00 0.00 0.00 3.57 5.88 2.38 5.71 0.00 0.00 1.56 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 K intron_retention CG7376 chr3L + chr3L_6168755_6168819 chr3L_6168754_6168755;chr3L_6168819_6168820 chr3L_6167603_6168754;chr3L_6168820_6169535 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA 5.88 0.00 NA NA NA 3.85 NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention CG3835,I_chrX_2036036_2037024 chrX + chrX_2038254_2038319 chrX_2038253_2038254;chrX_2038319_2038320 chrX_2037560_2038253;chrX_2038320_2038941 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD aru,I_chr2L_862259_862314,I_chr2L_864795_867505 chr2L - chr2L_862259_862318 chr2L_862259_862314 chr2L_862159_862258;chr2L_862319_862414 1.86 0.00 1.35 1.19 0.67 2.31 0.00 1.02 0.92 0.85 1.40 1.94 1.59 0.65 1.38 2.75 3.33 1.35 2.79 1.86 3.20 2.05 0.77 1.92 0.52 2.88 2.45 3.61 1.97 2.49 1.14 2.87 1.23 0.63 2.73 0.50 1.53 1.65 2.37 2.35 1.10 2.08 3.33 3.23 2.15 1.96 0.57 1.57 1.74 3.14 1.19 2.00 4.03 2.33 0.83 1.49 1.89 2.88 K jcn_only_AD CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4837672_4837772 chr3R_4837672_4837766 chr3R_4837396_4837671;chr3R_4837773_4837866 97.22 96.81 98.51 96.71 95.86 97.16 96.21 98.53 97.75 98.34 95.19 97.77 96.34 100.00 94.83 97.53 97.06 96.94 97.47 96.99 98.77 97.57 95.39 97.54 97.55 97.62 97.22 94.74 98.28 96.89 96.51 97.58 97.80 96.27 99.33 97.53 97.14 96.62 96.59 97.68 98.78 96.90 97.70 95.60 95.64 98.06 98.48 97.03 96.60 98.00 97.56 95.54 96.30 96.69 97.79 95.91 98.00 97.85 K jcn_only_AD Anxb11,I_chrX_16314152_16314405,I_chrX_16314152_16315813 chrX - chrX_16314152_16316028;chrX_16314152_16316199 chrX_16314152_16316276 chrX_16314083_16314151;chrX_16316277_16316298 11.28 NA NA NA NA NA 14.29 13.04 9.09 NA NA 9.52 NA NA NA NA NA NA NA NA NA 15.38 NA NA NA NA NA NA NA NA 13.04 NA NA 14.81 NA NA NA NA NA 0.00 NA 8.70 NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA K intron_retention CG7911 chr3R - chr3R_25829880_25830025 chr3R_25829879_25829880;chr3R_25830025_25830026 chr3R_25829712_25829879;chr3R_25830026_25830171 0.00 0.00 0.00 0.27 0.00 0.00 0.35 0.52 0.17 0.44 0.00 0.00 0.00 0.00 0.00 0.34 0.47 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.39 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.36 0.45 0.43 0.00 0.00 0.00 0.44 0.00 0.18 0.18 0.00 K intron_retention CG42299,CG15643,I_chrX_15465519_15465586 chrX - chrX_15465519_15465596 chrX_15465518_15465519;chrX_15465596_15465597 chrX_15465419_15465518;chrX_15465597_15465686 0.00 NA NA NA NA NA 0.00 NA 20.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 NA 21.43 7.69 NA NA NA 6.67 NA NA 0.00 NA 0.00 7.41 NA 0.00 NA 11.11 NA NA NA 0.00 6.25 NA NA NA NA NA NA NA NA NA K intron_retention CG5853,RI_chr2L_9942818_9944294,I_chr2L_9944682_9947179 chr2L - chr2L_9942818_9942882 chr2L_9942817_9942818;chr2L_9942882_9942883 chr2L_9942722_9942817;chr2L_9942883_9942920 5.00 0.00 1.85 5.63 0.00 2.00 4.17 0.00 5.56 5.26 2.13 3.28 5.26 4.08 2.99 20.00 0.00 5.88 2.56 5.22 5.08 1.43 10.91 3.57 2.94 0.00 12.50 0.00 0.00 9.80 1.59 14.29 5.97 5.48 5.00 2.90 10.00 6.25 7.27 6.38 0.00 5.68 9.09 3.12 8.57 5.56 11.36 3.70 4.30 17.24 7.27 0.00 7.32 7.41 3.64 13.79 3.45 4.55 K jcn_only_AA sgg,I_chrX_2528059_2528637,I_chrX_2528131_2535622,RI_chrX_2528212_2535830,I_chrX_2528367_2535622,I_chrX_2528472_2535622,I_chrX_2529065_2563945,I_chrX_2536127_2563666,I_chrX_2563342_2563666,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2528212_2535830 chrX_2528212_2535622 chrX_2528171_2528211;chrX_2535831_2535930 95.64 NA 86.36 95.83 NA NA 92.00 96.55 100.00 NA NA NA NA 100.00 NA 95.45 NA NA 95.00 95.45 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 92.86 NA NA NA NA NA NA NA NA NA K intron_retention ena chr2R + chr2R_15048921_15048977 chr2R_15048920_15048921;chr2R_15048977_15048978 chr2R_15048699_15048920;chr2R_15048978_15049098 0.00 0.00 0.00 3.30 0.00 0.00 0.00 1.56 0.00 0.00 0.00 1.80 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 6.49 0.00 0.00 0.00 0.00 0.00 0.00 3.17 0.00 0.00 1.30 0.00 1.19 0.00 0.00 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4293,RI_chrX_423385_423664,I_chrX_423385_423676 chrX - chrX_423564_423676 chrX_423563_423564;chrX_423676_423677 chrX_423443_423563;chrX_423677_423764 46.15 NA NA 88.89 NA NA 100.00 NA 76.92 NA NA 56.25 NA NA NA NA NA NA NA 36.84 NA 25.00 61.54 63.64 63.64 NA 58.82 53.85 46.15 NA NA NA NA NA NA 46.15 60.00 28.57 43.75 NA NA 43.75 NA NA 41.67 NA 63.64 NA 50.00 NA 35.00 NA 40.00 42.86 NA 44.44 40.00 NA N alternative_acceptor zetaCOP chr3L - chr3L_16664943_16665553 chr3L_16665251_16665553 chr3L_16665554_16665644;chr3L_16664764_16664942 1.04 0.53 0.87 11.58 0.00 0.93 8.88 1.69 2.01 0.98 0.85 1.10 8.49 2.44 0.80 3.18 0.68 0.53 0.43 0.91 0.64 3.85 1.53 1.31 2.73 0.53 1.14 2.13 0.75 1.64 0.47 1.04 0.47 1.62 1.34 4.88 0.81 0.79 0.33 0.69 1.45 1.31 0.50 1.34 1.23 1.30 0.84 1.03 1.39 1.69 0.50 1.98 0.58 0.76 0.00 1.36 1.01 1.22 K alternative_donor CG7530,I_chr3R_10556352_10557136,eff chr3R - chr3R_10556352_10557105;chr3R_10556352_10557148;chr3R_10556352_10557126;chr3R_10556352_10557198 chr3R_10556352_10557130 chr3R_10556252_10556351;chr3R_10557199_10557231 58.33 75.86 54.55 55.88 61.76 70.83 37.04 56.06 62.34 50.00 62.07 64.58 57.14 57.14 50.00 48.08 58.33 50.00 48.72 50.00 55.17 44.44 62.16 56.67 57.89 61.29 42.31 62.50 48.28 68.75 62.16 58.33 62.22 64.29 58.33 28.57 68.57 54.17 55.88 58.23 48.39 60.00 64.52 65.12 58.97 53.03 64.00 58.33 57.32 60.00 61.11 65.00 68.97 57.89 62.50 57.14 65.85 61.76 K jcn_only_AD Hrs,I_chr2L_2740474_2741107 chr2L + chr2L_2740474_2741107 chr2L_2740785_2741107 chr2L_2741108_2741207;chr2L_2740389_2740473 98.63 100.00 100.00 94.84 98.67 98.08 97.46 96.55 99.32 97.92 100.00 100.00 100.00 95.71 98.41 97.87 100.00 100.00 100.00 100.00 100.00 96.46 97.60 95.65 99.19 97.35 99.38 98.94 98.21 96.25 89.09 95.45 100.00 99.26 100.00 98.60 97.93 98.94 98.59 100.00 97.67 98.91 98.51 97.56 100.00 100.00 100.00 100.00 97.33 97.33 98.17 97.37 98.36 99.17 99.18 98.90 98.63 97.50 N alternative_acceptor CG6701,RI_chr2R_9866896_9867532,noncoding_6685 chr2R - chr2R_9866896_9867532 chr2R_9866924_9867532 chr2R_9867533_9867623;chr2R_9866796_9866895 93.33 93.33 93.75 90.91 92.86 92.86 93.62 97.92 95.00 100.00 82.35 95.56 92.00 96.30 93.33 88.89 95.00 94.12 95.83 97.37 93.33 94.44 96.15 91.67 93.75 93.33 87.50 90.91 100.00 92.31 84.21 NA 93.75 90.70 90.00 92.86 80.95 83.33 87.50 92.86 100.00 94.74 94.74 95.24 NA 90.91 100.00 93.33 91.30 NA 89.29 90.91 NA NA 95.24 NA 90.00 91.67 K intron_retention Jupiter,I_chr3R_7417030_7419354,I_chr3R_7417630_7417716,RI_chr3R_7442793_7445425 chr3R - chr3R_7417735_7418088 chr3R_7417734_7417735;chr3R_7418088_7418089 chr3R_7417717_7417734;chr3R_7418089_7418346 91.67 88.89 NA 83.33 NA NA 90.91 100.00 100.00 NA NA 88.24 NA NA NA NA NA NA NA 91.67 NA 78.57 100.00 90.00 88.89 NA 93.33 100.00 NA NA NA 100.00 NA 92.31 90.91 63.64 93.75 88.89 90.91 94.74 84.62 91.67 NA NA 78.57 100.00 100.00 92.31 92.86 92.86 100.00 88.89 NA 90.00 100.00 88.89 100.00 NA K intron_retention RI_chr2R_16552969_16554423,exu chr2R - chr2R_16557637_16557705 chr2R_16557636_16557637;chr2R_16557705_16557706 chr2R_16557484_16557636;chr2R_16557706_16557882 4.17 5.26 0.00 NA NA NA 5.56 7.41 7.69 6.67 0.00 2.86 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 75.00 4.17 0.00 26.67 NA 25.00 14.29 50.00 NA NA NA 21.43 0.00 NA 54.55 3.33 NA 12.50 10.53 NA 0.00 NA 12.50 0.00 12.50 NA 27.27 5.88 20.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 N intron_retention CG17724,Kdm4B,seq chr2R - chr2R_9066519_9072281 chr2R_9066518_9066519;chr2R_9072281_9072282 chr2R_9063672_9066518;chr2R_9072282_9072680 0.00 0.00 NA 12.50 NA NA 0.00 11.11 19.23 NA NA 7.41 NA NA 0.00 30.77 NA 0.00 0.00 5.56 NA NA 20.00 6.67 NA NA NA NA 5.88 NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG5261,I_chr2L_7428611_7428877 chr2L + chr2L_7428611_7428925 chr2L_7428611_7428877 chr2L_7428511_7428610;chr2L_7428926_7428977 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 93.75 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 96.97 100.00 100.00 95.00 96.97 100.00 100.00 100.00 100.00 95.83 100.00 100.00 K alternative_acceptor CG2701,RI_chrX_2612780_2612845,ttm50 chrX - chrX_2612780_2612845 chrX_2612784_2612845 chrX_2612846_2612945;chrX_2612680_2612779 94.59 92.86 92.31 96.77 91.67 93.33 100.00 96.67 96.77 91.67 100.00 91.43 90.91 100.00 100.00 89.29 100.00 100.00 94.74 100.00 93.75 93.02 91.49 97.14 90.48 81.82 95.12 94.59 96.67 92.31 84.78 96.67 92.86 92.31 90.48 89.66 95.12 81.48 93.33 95.45 88.46 95.00 100.00 97.06 97.44 93.33 97.44 89.19 96.88 95.56 97.44 95.00 87.50 97.30 88.89 93.94 94.34 94.87 K alternative_acceptor Dsp1,I_chrX_16228447_16229355,I_chrX_16231287_16231413 chrX + chrX_16228447_16230320;chrX_16228447_16230299 chrX_16228447_16230323 chrX_16228347_16228446;chrX_16230324_16230776 15.38 15.15 28.26 19.67 16.00 15.00 10.53 21.05 21.43 17.65 21.21 14.12 20.00 14.89 7.32 7.25 12.12 20.51 24.53 12.84 16.67 7.32 6.78 18.18 10.00 13.33 6.38 11.11 8.00 20.00 19.51 8.70 16.00 15.07 10.34 18.42 20.37 24.44 18.75 21.31 21.43 16.88 8.89 15.38 26.67 12.12 15.15 18.75 16.09 9.09 23.44 13.16 20.69 14.81 9.30 14.29 11.76 21.43 K alternative_acceptor CG6838,I_chr3L_22709306_22709668 chr3L - chr3L_22709303_22709397 chr3L_22709306_22709397 chr3L_22709398_22709514;chr3L_22709206_22709302 7.83 8.57 5.75 12.87 7.27 12.73 6.94 7.87 6.56 12.16 9.62 9.82 7.02 5.56 8.00 5.68 7.27 9.62 3.08 5.43 5.88 11.11 8.25 8.60 9.84 8.51 7.06 9.33 8.26 8.14 6.67 5.00 12.24 8.57 11.54 5.36 5.51 6.33 8.20 10.19 11.27 6.35 5.56 8.16 7.50 11.11 7.25 5.61 7.44 9.41 7.32 5.17 11.29 12.90 7.79 6.90 7.83 5.00 K alternative_acceptor Dif,I_chr2L_17414333_17414528,I_chr2L_17418395_17418487 chr2L - chr2L_17418375_17418487 chr2L_17418395_17418487 chr2L_17418488_17418555;chr2L_17418295_17418374 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 1.06 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon Psi,I_chr2R_12751549_12752073,I_chr2R_12753387_12753659 chr2R - chr2R_12751557_12752073,chr2R_12751549_12752073;chr2R_12749115_12752073 chr2R_12751609_12752073 chr2R_12748962_12749114 chr2R_12749604_12751608 chr2R_12752074_12752173 63.64 71.43 61.11 62.22 46.15 75.00 83.87 60.87 77.50 55.56 40.00 57.14 63.64 72.73 50.00 72.97 50.00 57.14 63.64 51.28 46.15 75.00 78.95 66.67 81.82 56.25 64.71 66.67 58.82 52.17 52.63 47.37 40.62 64.10 66.67 35.14 72.73 60.00 66.67 75.00 63.16 67.57 52.63 70.59 63.64 48.72 83.33 53.12 68.42 76.47 71.43 81.82 75.00 69.23 50.00 50.00 80.00 58.14 K jcn_only_AD Npc1a chr2L - chr2L_10217181_10217352 chr2L_10217181_10217340 chr2L_10216861_10217180;chr2L_10217353_10217533 42.86 33.33 41.18 45.24 34.69 40.74 29.06 44.55 40.69 24.39 34.48 41.18 37.14 46.67 35.29 52.75 40.74 52.63 37.21 44.23 42.86 33.00 46.05 43.33 48.48 46.00 51.92 NA 38.03 30.00 39.51 47.62 50.00 52.69 56.41 53.66 40.48 50.00 56.67 42.55 38.71 41.44 39.47 49.44 33.33 37.14 45.45 45.12 48.60 48.15 43.24 39.06 57.14 NA 48.75 37.84 32.56 48.21 K intron_retention p47,Aldh-III,I_chr2R_3356541_3356614,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3353983_3354073 chr2R_3353982_3353983;chr2R_3354073_3354074 chr2R_3353768_3353982;chr2R_3354074_3354180 1.12 0.65 0.64 2.56 0.00 0.73 2.27 0.00 1.40 0.75 4.17 1.28 0.00 1.52 0.00 0.00 1.74 0.00 0.00 1.06 0.67 2.02 1.66 1.47 3.06 4.00 5.26 2.45 3.55 1.06 8.61 0.69 1.68 1.41 0.89 0.72 1.07 0.65 1.16 1.80 8.64 1.52 0.00 2.60 0.80 0.98 0.88 4.67 1.12 2.02 1.41 0.00 0.97 0.53 1.14 0.72 1.14 0.88 K alternative_acceptor CG10948 chr3L - chr3L_12838769_12838833 chr3L_12838786_12838833 chr3L_12838834_12838953;chr3L_12838157_12838768 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG10981 chr3R + chr3R_1650698_1650754;chr3R_1650698_1650778 chr3R_1650698_1650757 chr3R_1650443_1650697;chr3R_1650779_1651166 47.83 33.33 53.85 55.00 NA 45.45 56.25 50.00 48.00 NA NA 47.83 35.71 33.33 45.45 54.17 63.64 33.33 37.50 46.15 50.00 40.00 52.38 47.06 41.67 35.71 47.62 37.50 40.00 40.00 55.56 25.00 33.33 53.33 46.15 41.67 NA 42.86 50.00 50.00 NA 50.00 NA 62.50 NA 50.00 53.85 16.67 46.15 57.89 50.00 NA 64.71 35.71 50.00 53.85 65.00 55.56 K jcn_only_AD Spc25,Cyp304a1 chr3R + chr3R_8787965_8788438 chr3R_8787977_8788438 chr3R_8788439_8788970;chr3R_8787748_8787964 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9104,CG9099 chrX - chrX_16778035_16778096 chrX_16778034_16778035;chrX_16778096_16778097 chrX_16777528_16778034;chrX_16778097_16778358 6.90 3.12 12.12 9.76 0.00 0.00 16.22 2.22 8.57 8.33 10.53 1.72 5.56 13.04 0.00 2.44 5.56 0.00 2.38 2.35 9.38 24.32 13.64 8.51 12.90 8.33 7.27 15.38 17.14 2.13 17.50 4.88 8.47 9.26 0.00 7.50 7.81 6.38 5.66 4.11 10.26 7.27 0.00 9.52 11.11 6.90 9.09 6.56 13.79 2.78 0.00 6.45 3.03 5.26 2.33 4.17 9.68 5.17 K intron_retention Psf3 chrX - chrX_10278916_10278983 chrX_10278915_10278916;chrX_10278983_10278984 chrX_10278849_10278915;chrX_10278984_10279044 17.24 21.05 NA 16.67 12.50 14.29 31.58 22.73 17.24 10.53 NA 20.00 NA NA 18.18 23.53 38.46 17.39 17.65 21.21 7.14 14.29 15.38 26.09 12.50 NA 20.00 12.50 16.67 17.65 10.00 17.24 20.00 15.38 18.75 4.35 18.18 22.73 20.00 17.02 10.34 12.50 7.69 15.38 28.12 16.28 27.78 9.68 16.00 22.22 20.00 NA 9.09 10.53 21.74 10.00 9.09 18.18 K intron_retention crol,I_chr2L_11799403_11802904 chr2L - chr2L_11803899_11809125 chr2L_11803898_11803899;chr2L_11809125_11809126 chr2L_11803785_11803898;chr2L_11809126_11809399 0.00 NA NA 2.82 0.00 0.00 2.56 4.17 8.11 0.00 0.00 9.09 5.00 0.00 11.76 0.00 NA 0.00 0.00 14.29 0.00 9.09 0.00 NA 0.00 0.00 0.00 9.52 4.62 0.00 NA NA 4.44 0.00 NA 0.00 5.26 NA 9.09 0.00 0.00 0.00 0.00 0.00 NA 10.00 NA 0.00 0.00 NA 0.00 NA NA NA 5.56 NA NA 0.00 K alternative_donor osa,I_chr3R_13542657_13542834,I_chr3R_13542657_13543500,I_chr3R_13542657_13543662,I_chr3R_13542657_13543668,I_chr3R_13543730_13543786 chr3R - chr3R_13542657_13543968;chr3R_13542657_13543500;chr3R_13542657_13543662;chr3R_13542657_13542834;chr3R_13542657_13543668 chr3R_13542657_13543677 chr3R_13542557_13542656;chr3R_13543969_13544017 80.99 76.27 84.48 72.90 82.35 77.42 78.79 77.27 80.13 71.70 92.73 78.03 72.86 82.61 82.35 85.15 73.61 81.82 83.33 79.02 77.97 75.56 75.44 79.17 79.25 73.68 70.37 80.85 79.59 75.00 84.75 89.47 88.04 82.11 84.91 75.00 72.53 83.02 74.03 80.30 79.17 82.11 86.67 82.43 84.00 90.00 83.33 85.71 80.99 82.86 76.60 85.19 93.55 58.82 83.95 85.19 89.47 84.21 K intron_retention CG14322 chr3R + chr3R_13494463_13494525 chr3R_13494462_13494463;chr3R_13494525_13494526 chr3R_13494205_13494462;chr3R_13494526_13494717 0.00 NA NA 16.67 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 4.35 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K alternative_donor Vap-33-1 chrX + chrX_3843210_3843513;chrX_3843099_3843513;chrX_3843406_3843513;chrX_3843214_3843513 chrX_3843206_3843513 chrX_3843514_3843746;chrX_3843030_3843098 0.00 0.00 0.00 2.41 0.00 4.65 0.00 1.02 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.51 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.71 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD BicD,Aac11,I_chr2L_17475843_17475910 chr2L - chr2L_17475355_17475534 chr2L_17475355_17475407 chr2L_17474918_17475354;chr2L_17475535_17475615 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 K jcn_only_AA coro,I_chr2R_2754447_2755071 chr2R - chr2R_2751039_2751782 chr2R_2751060_2751782 chr2R_2751783_2752076;chr2R_2750853_2751038 1.65 2.65 2.72 1.68 2.86 1.20 1.70 1.92 1.00 0.00 0.85 2.08 2.48 0.00 1.59 1.21 2.02 2.19 0.68 2.49 2.14 3.30 1.20 1.24 1.80 0.79 1.52 0.75 1.35 2.70 1.05 2.54 5.00 1.65 1.71 1.18 2.11 2.03 1.94 2.28 4.65 3.56 2.73 1.20 1.04 1.35 0.96 1.65 1.64 1.35 1.69 0.74 0.73 1.48 0.50 1.50 1.74 0.00 K jcn_only_AD regucalcin,I_chrX_11910759_11910811 chrX + chrX_11906562_11910035 chrX_11906584_11910035 chrX_11910036_11910754;chrX_11906467_11906561 0.00 NA 0.00 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 3.85 NA NA NA 4.55 NA NA 0.00 0.00 NA K intron_retention CG42507,Trl,EI_chr3L_14750431_14750893,I_chr3L_14750431_14750985,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14750431_14750583 chr3L_14750430_14750431;chr3L_14750583_14750584 chr3L_14750331_14750430;chr3L_14750584_14750733 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 18.75 14.29 NA NA NA NA NA 30.77 NA 31.25 NA NA NA 7.14 NA 8.70 NA NA NA NA NA NA NA NA NA 14.29 K intron_retention CG11009,I_chr3L_12844823_12845526,I_chr3L_12845441_12845526 chr3L + chr3L_12844823_12845715 chr3L_12844822_12844823;chr3L_12845715_12845716 chr3L_12844723_12844822;chr3L_12845716_12845816 2.20 1.82 2.33 16.00 0.00 0.00 2.08 5.26 5.13 3.57 0.00 6.35 9.52 0.00 1.37 0.00 2.44 0.00 2.70 4.04 0.00 1.54 2.35 3.08 0.00 0.00 2.90 8.00 0.00 3.08 2.08 0.00 6.90 4.11 2.27 0.00 2.90 0.00 0.00 0.91 2.50 5.88 0.00 2.35 0.00 2.20 4.29 5.26 5.38 2.41 1.33 1.59 3.45 0.00 6.15 0.00 1.54 0.98 K intron_retention Fmr1,I_chr3R_5930712_5930781,I_chr3R_5934794_5935245,I_chr3R_5934801_5935537 chr3R - chr3R_5930733_5930781 chr3R_5930732_5930733;chr3R_5930781_5930782 chr3R_5930601_5930732;chr3R_5930782_5930881 7.21 0.00 0.00 7.32 0.00 0.00 2.56 8.89 8.47 10.00 0.00 15.56 4.76 9.09 18.18 3.70 0.00 0.00 2.56 7.27 0.00 0.00 11.63 0.00 7.14 8.33 38.89 16.67 8.89 0.00 3.23 19.05 6.78 9.09 0.00 40.91 8.77 0.00 5.71 10.17 14.29 0.00 NA 11.11 8.70 12.12 0.00 8.82 5.41 11.76 10.53 6.67 14.29 NA 0.00 NA 0.00 12.00 K intron_retention sut1,I_chr2R_3970908_3972035,sut2 chr2R + chr2R_3970891_3972035 chr2R_3970890_3970891;chr2R_3972035_3972036 chr2R_3970808_3970890;chr2R_3972036_3972135 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention chr2R_6973810_6974365.0,noncoding_5956 chr2R + chr2R_6973463_6975382 chr2R_6973462_6973463;chr2R_6975382_6975383 chr2R_6973091_6973462;chr2R_6975383_6975805 97.92 95.24 87.50 100.00 93.75 100.00 94.74 97.92 93.62 NA 100.00 100.00 100.00 95.83 93.75 96.15 92.86 100.00 100.00 83.87 100.00 NA 100.00 NA 90.00 92.31 100.00 NA NA 100.00 92.86 NA NA 96.67 100.00 NA NA NA 87.50 95.65 NA 96.67 95.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 88.89 NA NA K cassette CG17508 chr2R + chr2R_1496995_1498696 chr2R_1496995_1497637;chr2R_1497762_1498696 chr2R_1497638_1497761 chr2R_1496895_1496994;chr2R_1498697_1499080 82.93 75.51 80.95 82.46 82.35 75.00 88.46 85.00 81.61 93.33 100.00 86.76 88.24 90.00 86.36 81.82 90.48 84.62 83.93 84.34 94.29 58.33 82.05 85.42 80.95 70.21 82.22 94.12 65.22 85.19 83.72 80.00 73.53 87.01 77.42 57.14 84.09 77.50 78.12 85.71 81.82 80.00 82.93 83.33 67.65 86.49 83.72 92.59 83.33 81.82 80.85 85.29 75.00 88.00 80.33 87.80 77.42 80.00 K jcn_only_AD CG31038,I_chr3R_25702915_25703648,I_chr3R_25705533_25722419,I_chr3R_25727788_25727905 chr3R + chr3R_25702915_25703648;chr3R_25702989_25703648;chr3R_25702895_25703648;chr3R_25702897_25703648;chr3R_25702901_25703648;chr3R_25702970_25703648 chr3R_25702838_25703648 chr3R_25703649_25703748;chr3R_25702831_25702837 9.52 NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 18.18 NA NA NA NA 9.52 NA NA NA NA NA NA NA NA NA K alternative_donor Rab-RP4,RI_chrX_5565547_5565601 chrX - chrX_5565547_5565635 chrX_5565547_5565601 chrX_5565447_5565546;chrX_5565636_5565701 0.70 0.00 0.93 1.80 1.49 1.09 0.00 0.00 2.23 0.00 0.00 0.00 1.09 1.06 0.00 0.00 0.00 0.00 0.98 0.44 0.00 1.75 0.79 1.40 2.06 0.95 0.70 0.00 1.45 0.74 1.74 1.60 1.61 0.00 1.98 0.80 0.99 0.00 1.82 0.33 1.71 0.00 0.00 1.82 1.20 0.97 0.52 0.40 0.00 0.00 1.42 0.00 0.00 0.85 0.00 0.00 0.00 0.37 K jcn_only_AD sick chr2L + chr2L_19887321_19907761 chr2L_19902188_19907761 chr2L_19907762_19907892 3.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Anxb11,I_chrX_16314152_16314405,I_chrX_16314152_16315813 chrX - chrX_16314152_16316028;chrX_16314152_16316276 chrX_16314152_16316199 chrX_16314083_16314151;chrX_16316277_16316298 65.94 NA NA NA NA NA 47.62 65.22 57.58 NA NA 52.38 NA NA NA NA NA NA NA NA NA 84.62 NA NA NA NA NA NA NA NA 73.91 NA NA 62.96 NA NA NA NA NA 66.67 NA 69.57 NA NA NA NA NA NA 76.67 NA NA NA NA NA NA NA NA NA K multi_cassette RI_chrX_11473566_11473702,roX2,noncoding_23149,I_chrX_11475074_11475402 chrX + chrX_11473158_11473702 chrX_11473158_11473247;chrX_11473270_11473384;chrX_11473433_11473485;chrX_11473562_11473702 chrX_11473248_11473269;chrX_11473385_11473432;chrX_11473486_11473561 chrX_11473148_11473157;chrX_11473703_11473726 18.77 22.22 20.00 10.53 NA NA NA 20.00 22.73 10.00 NA 19.35 42.86 18.18 13.33 12.90 33.33 NA 11.76 15.79 NA NA NA NA NA 33.33 NA NA NA NA 14.29 22.22 NA 14.81 NA NA NA NA NA 10.34 NA 26.32 14.29 NA NA 28.57 20.00 6.67 15.62 NA NA 33.33 NA NA 15.00 33.33 30.00 15.79 K intron_retention CG3764 chr3L - chr3L_16991558_16991624 chr3L_16991557_16991558;chr3L_16991624_16991625 chr3L_16991370_16991557;chr3L_16991625_16992647 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 4.76 0.00 7.41 0.00 2.04 11.11 3.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 3.23 0.00 1.41 0.00 0.00 0.00 0.00 0.00 NA 0.00 K jcn_only_AA RpL12,I_chr2R_19948517_19948655,RI_chr2R_19948517_19948677,I_chr2R_19948517_19948682 chr2R + chr2R_19948517_19948672;chr2R_19948517_19948677;chr2R_19948517_19948655 chr2R_19948517_19948682 chr2R_19948417_19948516;chr2R_19948683_19948755 0.02 0.02 0.00 0.00 0.02 0.03 0.01 0.01 0.00 0.03 0.02 0.02 0.00 0.00 0.01 0.01 0.00 0.03 0.04 0.01 0.00 0.00 0.08 0.03 0.03 0.00 0.01 0.02 0.11 0.04 0.08 0.04 0.00 0.04 0.08 0.02 0.05 0.02 0.02 0.00 0.02 0.02 0.02 0.00 0.09 0.08 0.02 0.06 0.02 0.02 0.00 0.02 0.01 0.03 0.03 0.02 0.06 0.03 K intron_retention sbr,RI_chrX_10731248_10731484 chrX - chrX_10730663_10730725 chrX_10730662_10730663;chrX_10730725_10730726 chrX_10730553_10730662;chrX_10730726_10731247 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 2.20 0.00 1.03 0.00 1.32 0.00 0.00 0.00 0.00 1.54 0.00 0.00 2.38 K intron_retention Papss chr3L + chr3L_19838529_19838611 chr3L_19838528_19838529;chr3L_19838611_19838612 chr3L_19838397_19838528;chr3L_19838612_19838730 46.15 69.23 55.56 78.26 NA NA 63.16 47.83 50.00 NA 88.89 50.00 NA 60.00 50.00 60.00 NA 38.46 46.15 50.00 NA 31.58 50.00 43.75 46.15 71.43 90.91 NA 54.55 33.33 43.75 NA 23.81 42.86 NA 80.00 40.00 33.33 41.18 36.36 NA 59.26 41.67 NA NA 29.41 53.85 36.36 45.83 NA 35.29 36.36 NA NA 56.25 46.15 46.15 29.03 K intron_retention CG8213 chr2R - chr2R_4858557_4858929 chr2R_4858556_4858557;chr2R_4858929_4858930 chr2R_4858370_4858556;chr2R_4858930_4862949 13.34 NA NA 53.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA 11.76 10.53 12.50 NA NA 14.29 NA 13.64 13.04 NA NA NA NA NA 37.50 6.67 NA NA 17.65 18.75 20.00 NA 12.50 7.14 14.29 28.57 11.76 NA NA 7.14 NA NA 12.50 NA 20.00 NA 25.00 K alternative_acceptor ade5,I_chrX_12653069_12653157 chrX - chrX_12653946_12654381 chrX_12653949_12654381 chrX_12654382_12654426;chrX_12653745_12653945 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516706_21517821;chr3L_21516330_21517821;chr3L_21516399_21517821;chr3L_21517168_21517821;chr3L_21516722_21517821;chr3L_21516918_21517821;chr3L_21516343_21517821;chr3L_21516728_21517821 chr3L_21516501_21517821 chr3L_21517822_21517920;chr3L_21516311_21516329 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21263124_21263647 chr2L_21263123_21263124;chr2L_21263647_21263648 chr2L_21262988_21263123;chr2L_21263648_21263786 16.52 4.35 18.37 14.81 28.57 11.90 22.22 15.46 17.74 NA 7.41 15.22 17.65 15.69 16.33 18.28 20.83 14.29 16.36 16.90 0.00 29.17 19.51 19.05 24.00 29.17 16.22 33.33 33.33 15.38 16.13 16.67 37.93 13.75 21.21 15.62 NA 33.33 16.67 13.79 40.00 18.29 15.00 16.13 NA 12.12 NA 17.95 18.75 10.53 16.67 9.09 NA 15.38 10.94 13.04 11.76 24.00 K jcn_only_AD CG10602 chr2L - chr2L_18857404_18857587;chr2L_18857404_18857541 chr2L_18857404_18857511 chr2L_18857177_18857403;chr2L_18857588_18857700 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.94 0.00 NA 0.00 2.33 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 N cassette sba chr3R - chr3R_19725516_19739517 chr3R_19725516_19728849;chr3R_19729184_19739517 chr3R_19728850_19729183 chr3R_19725509_19725515;chr3R_19739518_19739641 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 73.81 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19566012_19566069 chr2R_19566011_19566012;chr2R_19566069_19566070 chr2R_19565741_19566011;chr2R_19566070_19567273 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL5,I_chr2L_22428750_22428846 chr2L - chr2L_22428787_22428846 chr2L_22428786_22428787;chr2L_22428846_22428847 chr2L_22428534_22428786;chr2L_22428847_22428946 0.05 0.04 0.06 0.04 0.05 0.05 0.05 0.04 0.05 0.06 0.04 0.04 0.06 0.08 0.06 0.06 0.06 0.03 0.04 0.05 0.05 0.06 0.06 0.06 0.07 0.04 0.19 0.47 0.16 0.06 0.03 0.06 0.10 0.05 0.05 0.04 0.05 0.06 0.04 0.09 0.06 0.05 0.07 0.07 0.04 0.04 0.04 0.08 0.08 0.05 0.06 0.11 0.05 0.04 0.04 0.04 0.06 0.03 N jcn_only_AA noncoding_14363 chr3LHet - chr3LHet_709127_709194;chr3LHet_709103_709194 chr3LHet_709113_709194 chr3LHet_709195_709261;chr3LHet_709044_709102 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 97.50 100.00 100.00 100.00 NA 100.00 100.00 93.49 100.00 91.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.02 100.00 98.78 100.00 100.00 100.00 100.00 100.00 100.00 99.03 100.00 K alternative_acceptor RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12926410_12926473 chr2R_12926410_12926467 chr2R_12926100_12926409;chr2R_12926474_12926605 80.95 85.19 76.92 82.50 85.71 80.00 74.19 78.57 80.39 84.62 92.86 84.31 75.86 78.26 68.57 84.38 75.00 86.67 79.17 79.69 64.00 93.02 77.55 94.12 76.92 85.19 88.89 84.00 84.21 74.29 80.00 94.74 80.43 80.85 95.65 86.49 84.38 74.07 70.73 83.61 86.36 78.72 77.78 91.43 86.21 80.00 76.47 86.54 86.27 70.97 76.09 82.61 91.30 81.25 80.56 76.00 80.95 87.10 K intron_retention CG3077 chr2L - chr2L_2765428_2765495 chr2L_2765427_2765428;chr2L_2765495_2765496 chr2L_2765284_2765427;chr2L_2765496_2765675 0.00 0.00 0.00 3.45 0.00 3.85 6.67 5.13 4.00 4.35 0.00 0.00 NA 0.00 4.17 3.57 0.00 0.00 6.67 3.57 0.00 0.00 0.00 2.17 4.55 9.09 20.00 19.05 0.00 0.00 3.85 6.67 3.45 2.94 0.00 4.35 0.00 0.00 0.00 0.00 4.35 6.78 0.00 0.00 0.00 0.00 0.00 5.71 7.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4847655_4848167;chrX_4847655_4848149 chrX_4847655_4847757 chrX_4847526_4847654;chrX_4848168_4848168 8.33 8.33 5.88 19.05 5.56 11.76 10.71 8.70 14.58 10.00 8.33 17.39 62.50 6.67 5.88 14.29 5.56 14.29 6.67 9.38 0.00 4.35 3.03 9.38 0.00 0.00 0.00 0.00 0.00 3.70 7.41 7.14 13.33 19.35 8.33 5.88 2.63 4.35 3.03 10.00 15.79 14.81 10.00 10.71 5.56 13.04 7.41 18.18 8.70 4.00 6.06 5.00 11.11 0.00 15.38 0.00 11.76 8.70 K intron_retention CkIIalpha-i1 chr3L + chr3L_15810274_15810331 chr3L_15810273_15810274;chr3L_15810331_15810332 chr3L_15810092_15810273;chr3L_15810332_15811721 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG18659,E_chr2R_5011363_5019110,RI_chr2R_5013572_5014531,I_chr2R_5016147_5016997 chr2R - chr2R_5011651_5014531;chr2R_5011651_5014923 chr2R_5011651_5013055;chr2R_5013572_5014531,chr2R_5013572_5014923 chr2R_5013056_5013571 chr2R_5011194_5011650;chr2R_5014924_5015382 99.00 99.11 98.70 91.95 100.00 98.73 97.75 98.84 98.60 100.00 98.25 99.32 100.00 100.00 98.77 100.00 100.00 100.00 100.00 98.28 93.15 89.33 97.67 99.38 99.09 98.33 99.33 98.36 99.29 98.40 100.00 98.85 97.18 99.08 97.96 99.00 98.49 99.25 98.00 99.42 97.35 98.14 98.04 97.17 100.00 99.23 99.22 100.00 99.24 99.25 97.65 98.57 100.00 96.40 98.85 99.15 99.12 99.01 K intron_retention CG5969,noncoding_13793,CG5976 chr3L + chr3L_20467422_20467486 chr3L_20467421_20467422;chr3L_20467486_20467487 chr3L_20467378_20467421;chr3L_20467487_20467743 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Pegarn chr3L + chr3L_12783425_12784534 chr3L_12783424_12783425;chr3L_12784534_12784535 chr3L_12783403_12783424;chr3L_12784535_12784733 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 17.65 NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 46.67 NA 25.00 NA NA NA NA NA NA NA NA NA 40.00 K intron_retention dos,I_chr3L_2589746_2592161 chr3L + chr3L_2594466_2594521 chr3L_2594465_2594466;chr3L_2594521_2594522 chr3L_2593865_2594465;chr3L_2594522_2595590 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG34394,I_chr2L_3365674_3365965,RI_chr2L_3365677_3365965,I_chr2L_3365701_3365757 chr2L - chr2L_3365677_3367244 chr2L_3365676_3365677;chr2L_3367244_3367245 chr2L_3365601_3365676;chr2L_3367245_3367719 36.31 40.00 42.86 43.48 41.67 42.86 42.31 43.64 44.57 24.00 34.21 30.49 33.33 43.24 47.22 38.78 47.50 44.83 34.62 34.72 35.48 50.00 33.33 27.03 37.14 52.78 35.42 52.17 18.52 23.08 41.18 25.00 13.33 40.00 23.68 21.62 28.38 21.05 30.00 34.21 NA 41.77 46.15 23.33 22.22 29.41 39.13 23.08 47.06 42.31 33.33 31.82 15.00 31.82 51.35 42.86 47.62 41.67 K jcn_only_AA RluA-2,I_chr2L_10480906_10481097 chr2L + chr2L_10482575_10482636 chr2L_10482575_10482624 chr2L_10482285_10482574;chr2L_10482637_10482786 26.45 NA NA 21.43 NA NA 48.15 37.93 22.86 NA NA 31.82 NA NA NA NA 33.33 NA NA 36.36 NA NA 11.54 NA NA NA 16.00 NA NA NA 13.51 NA NA 24.00 NA NA NA NA NA 30.00 20.83 13.89 NA 25.81 22.73 31.58 31.43 42.86 24.24 NA NA NA NA NA 33.33 16.67 27.08 35.00 K intron_retention CG1603 chr2R - chr2R_3403088_3403147 chr2R_3403087_3403088;chr2R_3403147_3403148 chr2R_3402725_3403087;chr2R_3403148_3403402 0.00 NA NA 0.00 0.00 NA 0.00 0.00 9.09 NA NA 7.69 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA NA 11.11 NA NA 0.00 NA NA 0.00 4.76 NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA 12.50 NA NA NA NA NA 6.25 0.00 0.00 NA K jcn_only_AD CG10737 chr2R + chr2R_15062592_15063752;chr2R_15062754_15063752 chr2R_15062814_15063752 chr2R_15063753_15063852;chr2R_15062387_15062591 63.33 NA NA 45.00 NA NA 82.00 NA 63.33 NA NA NA NA NA NA NA NA NA NA 65.71 NA 46.43 NA NA NA NA NA NA NA NA NA NA 30.77 50.00 NA NA NA NA NA NA NA 68.00 NA NA 73.68 NA NA 55.00 65.38 NA NA NA NA NA NA NA 70.00 62.50 K alternative_donor nimC1,I_chr2L_13975880_13975977 chr2L - chr2L_13975880_13976476 chr2L_13975880_13975977 chr2L_13975780_13975879;chr2L_13976477_13976753 26.67 27.59 28.57 24.32 21.21 25.00 27.03 25.24 25.23 NA 21.82 29.11 30.00 36.36 26.42 38.71 30.56 25.93 37.78 23.23 27.27 22.22 33.33 30.77 25.00 21.21 31.58 36.36 11.11 31.25 36.36 36.36 26.67 30.16 27.27 33.33 21.74 8.33 22.22 33.33 10.00 25.58 35.48 20.00 NA 29.41 20.00 31.25 28.05 21.43 37.50 22.73 NA NA 20.63 23.08 21.43 18.18 K intron_retention I_chr2R_13460029_13460240,Dcr-2,I_chr2R_13466001_13466072 chr2R - chr2R_13467618_13467673 chr2R_13467617_13467618;chr2R_13467673_13467674 chr2R_13466921_13467617;chr2R_13467674_13467980 8.77 7.32 9.09 22.95 17.24 9.09 9.64 7.44 6.96 11.54 4.35 10.28 3.45 12.50 7.79 10.59 4.55 6.12 12.86 7.08 5.13 9.23 8.77 11.63 21.05 15.25 7.69 26.53 7.84 5.13 18.87 NA 14.71 10.75 7.50 21.88 8.00 0.00 5.56 8.79 22.22 9.17 6.67 7.55 NA 6.67 NA 10.39 8.65 NA 10.64 8.33 NA NA 13.51 0.00 0.00 2.70 N alternative_acceptor Rab2,I_chr2R_2584435_2585553 chr2R + chr2R_2585891_2585965 chr2R_2585891_2585950 chr2R_2585554_2585890;chr2R_2585966_2586134 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.26 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG1667,RI_chr2R_5731409_5731653,I_chr2R_5732410_5732504 chr2R + chr2R_5732410_5732504 chr2R_5732410_5732494 chr2R_5732341_5732409;chr2R_5732505_5732561 100.00 96.15 100.00 98.46 100.00 98.31 100.00 100.00 98.69 100.00 100.00 99.07 100.00 100.00 98.75 100.00 98.25 100.00 100.00 98.71 100.00 100.00 98.11 98.39 100.00 98.28 100.00 100.00 98.31 100.00 100.00 100.00 100.00 98.17 100.00 NA 98.59 100.00 100.00 99.12 96.83 100.00 98.31 97.22 97.26 98.80 100.00 98.33 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 98.73 96.43 K jcn_only_AA wun2,I_chr2R_5302867_5303906,I_chr2R_5304606_5304660 chr2R + chr2R_5302867_5304149 chr2R_5302867_5303906 chr2R_5302767_5302866;chr2R_5304150_5304298 2.13 1.52 1.80 0.46 0.00 2.94 1.69 2.15 2.46 0.00 0.86 1.05 4.55 3.82 1.64 2.09 0.00 1.00 2.67 5.98 0.76 1.42 2.35 2.73 1.65 0.00 3.81 0.00 5.56 0.00 7.14 4.44 2.78 2.67 4.44 5.21 2.07 2.13 2.73 2.22 1.98 1.85 1.80 1.48 2.15 2.07 3.70 5.41 1.54 4.92 2.99 1.37 3.85 1.12 2.21 3.09 1.63 4.17 K alternative_donor d4 chr2R + chr2R_1182563_1182620;chr2R_1182573_1182620;chr2R_1182566_1182620 chr2R_1182569_1182620 chr2R_1182621_1183461;chr2R_1182302_1182562 41.03 43.90 32.61 38.81 43.90 34.21 40.98 35.19 36.89 61.11 38.46 52.94 46.67 40.62 37.84 43.64 37.50 48.28 51.61 38.46 44.12 34.69 44.68 47.62 50.00 31.03 45.28 38.46 34.62 40.00 51.72 40.91 41.67 40.00 48.00 41.18 44.64 41.03 46.00 47.69 43.90 40.00 39.29 31.91 46.55 50.00 38.00 54.90 40.00 38.60 43.48 42.86 38.18 46.15 37.50 40.00 37.65 50.00 K intron_retention CG5792,F_chr2L_12714547_12714695 chr2L - chr2L_12718057_12721450 chr2L_12718056_12718057;chr2L_12721450_12721451 chr2L_12717565_12718056;chr2L_12721451_12721525 30.77 NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA 31.58 15.79 0.00 NA NA 30.77 NA NA NA NA NA NA 46.15 NA NA NA NA NA NA NA 11.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_acceptor CG34394,I_chr2L_3365674_3365965,RI_chr2L_3365677_3365965,I_chr2L_3365701_3365757 chr2L - chr2L_3365976_3367244;chr2L_3365677_3367244 chr2L_3365674_3367244 chr2L_3367245_3367719;chr2L_3365601_3365673 39.13 38.10 42.86 29.17 26.67 39.13 33.33 35.14 41.07 38.89 19.05 32.69 38.89 26.32 33.33 36.36 34.78 43.48 43.75 40.82 44.44 27.47 42.42 44.00 48.39 41.18 37.50 35.71 23.53 38.71 47.83 NA 39.13 30.00 41.38 48.28 36.73 34.62 39.22 44.44 NA 48.21 35.71 51.85 36.36 53.85 56.25 61.54 40.62 36.84 47.50 57.89 42.86 33.33 48.00 33.33 40.00 NA K intron_retention Pp1-87B chr3R - chr3R_8249602_8249672 chr3R_8249601_8249602;chr3R_8249672_8249673 chr3R_8249335_8249601;chr3R_8249673_8249908 98.83 100.00 95.05 100.00 100.00 100.00 99.38 98.83 98.28 97.87 98.75 99.07 96.81 97.14 99.09 98.72 98.68 89.71 99.19 97.18 98.51 97.14 99.03 96.43 97.92 100.00 99.16 99.02 99.09 100.00 100.00 97.24 98.06 100.00 100.00 100.00 100.00 97.78 97.92 97.63 98.84 99.33 98.89 99.07 99.31 96.96 98.67 98.58 99.52 98.41 100.00 100.00 98.53 98.61 98.29 95.74 99.12 98.77 K jcn_only_AD Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046104;chr3L_16045277_16046104;chr3L_16045275_16046104 chr3L_16045316_16046104 chr3L_16046105_16046204;chr3L_16045216_16045250 0.00 0.00 0.00 0.00 2.63 0.00 0.00 1.87 1.67 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 1.20 0.00 1.85 0.00 0.00 0.00 0.00 1.28 0.00 3.33 1.56 0.00 1.35 0.00 0.00 0.00 0.00 0.00 2.38 2.78 0.00 0.00 0.00 0.00 1.64 1.75 0.00 0.00 0.00 0.00 0.91 0.00 1.92 0.00 0.00 NA 0.00 5.56 NA 0.00 K alternative_acceptor SPoCk,I_chr3L_22776339_22776519,I_chr3L_22777865_22778359 chr3L + chr3L_22768238_22770210 chr3L_22768238_22770191 chr3L_22768075_22768237;chr3L_22770211_22771924 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 NA NA K jcn_only_AD None chrU + chrU_1178980_1183262;chrU_1179335_1183262 chrU_1182323_1183262 0.97 2.16 2.14 0.00 0.00 0.00 0.97 0.32 0.86 0.00 0.00 0.72 2.10 0.00 1.57 0.43 1.69 1.82 0.00 0.38 0.00 0.00 1.54 1.53 1.61 0.00 0.76 4.08 0.82 1.98 1.69 0.85 3.28 0.54 6.48 0.00 2.35 2.74 1.03 1.01 1.23 0.27 2.24 1.01 3.60 1.65 1.24 1.56 1.15 0.00 2.05 1.00 0.89 0.00 0.00 0.00 0.00 0.95 K cassette tou,I_chr2R_7468394_7468453,RI_chr2R_7474644_7475275,I_chr2R_7479681_7491857,I_chr2R_7504956_7505020 chr2R - chr2R_7468904_7470519 chr2R_7468904_7469132;chr2R_7469651_7470519 chr2R_7469133_7469650 chr2R_7468454_7468903;chr2R_7470520_7474530 52.94 58.46 56.36 45.30 45.00 56.36 54.41 50.57 58.73 50.00 40.00 56.76 56.67 53.57 54.69 63.24 61.36 59.18 41.77 51.47 50.00 63.82 55.12 62.24 60.66 45.76 53.77 63.77 40.00 50.00 43.48 49.23 51.82 56.18 52.63 50.00 50.60 51.85 51.59 49.04 52.94 54.39 55.10 52.22 45.88 53.85 65.08 38.13 57.76 55.38 62.63 56.60 62.50 52.46 52.17 47.83 52.46 39.74 K jcn_only_AD eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341925_20342041;chr3L_20341636_20342041;chr3L_20341865_20342041;chr3L_20341486_20342041;chr3L_20341522_20342041;chr3L_20341751_20342041;chr3L_20341530_20342041;chr3L_20341629_20342041;chr3L_20341598_20342041;chr3L_20341759_20342041 chr3L_20341509_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 4.35 3.03 3.33 4.59 6.67 9.30 1.23 5.74 9.86 4.35 6.98 1.33 7.14 5.26 1.43 10.26 4.62 5.88 4.76 7.09 0.00 8.70 2.63 6.12 2.44 5.71 6.45 7.41 0.00 7.41 1.15 4.55 2.44 9.16 NA 0.00 4.08 5.56 3.45 2.54 0.00 6.45 5.26 0.00 5.41 2.22 0.00 7.50 8.39 2.13 0.00 2.50 0.00 NA 3.06 3.33 0.00 2.47 K alternative_acceptor rdgA chrX + chrX_8914065_8914914 chrX_8914065_8914899 chrX_8913982_8914064;chrX_8914915_8915324 6.67 NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA 0.00 7.69 NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA K jcn_only_AA CG9992 chrX - chrX_16277545_16278620;chrX_16277559_16278620 chrX_16277201_16278620 chrX_16278621_16278914 31.63 40.00 35.09 63.30 33.33 33.33 55.24 31.62 31.46 NA 34.43 43.12 53.75 35.71 40.62 26.21 38.57 7.89 31.65 29.86 38.33 52.08 25.30 32.35 47.22 38.98 25.00 16.28 51.61 27.78 31.25 33.33 NA 26.17 29.73 59.52 38.36 29.73 30.00 19.61 27.27 32.52 38.81 22.97 26.09 24.24 18.00 NA 27.83 28.99 25.00 20.34 33.33 33.33 25.76 23.40 28.89 32.35 K jcn_only_AD foi,I_chr3L_8520658_8520733,I_chr3L_8524905_8524976 chr3L + chr3L_8518753_8523659;chr3L_8518805_8523659 chr3L_8518490_8523659 chr3L_8523660_8524249;chr3L_8518407_8518489 7.06 3.53 8.16 8.45 4.71 6.59 1.56 4.46 4.05 12.20 7.69 0.96 3.33 3.96 6.45 4.14 7.07 3.15 4.26 5.70 5.26 11.11 9.72 7.84 12.33 0.89 4.44 11.76 23.38 8.70 5.97 7.50 13.04 6.33 6.76 8.65 12.50 4.65 4.08 8.87 11.96 4.44 7.06 10.91 14.08 8.99 18.42 8.67 2.28 11.29 4.88 3.85 7.50 15.00 5.30 6.58 11.27 8.63 K mutually_exclusive ens,I_chr3L_4130719_4131120 chr3L - chr3L_4127163_4129650,chr3L_4129792_4131120;chr3L_4127163_4130388,chr3L_4130644_4131120 chr3L_4127163_4128613,chr3L_4128974_4131120 chr3L_4129651_4129791;chr3L_4130389_4130643 chr3L_4128614_4128973 chr3L_4126989_4127162;chr3L_4131121_4131220 0.88 0.97 1.11 0.00 1.23 1.08 0.00 0.00 0.55 1.39 0.00 0.67 0.00 0.00 1.08 1.64 0.00 1.67 0.00 0.00 0.00 0.65 0.64 1.63 0.00 0.00 0.83 2.11 3.92 0.87 0.88 1.64 1.50 0.68 1.96 0.80 0.56 1.57 2.08 0.52 6.02 1.02 1.39 0.74 3.26 2.30 2.47 0.69 0.70 0.00 0.65 1.05 1.49 1.82 0.00 1.20 2.17 1.33 K alternative_acceptor Rcd6,I_chr2R_16518342_16520460,I_chr2R_16518620_16518916,RI_chr2R_16520388_16520855 chr2R - chr2R_16518342_16520294 chr2R_16518620_16520294 chr2R_16520295_16520328;chr2R_16518242_16518341 100.00 NA NA 85.71 100.00 NA 100.00 90.00 100.00 100.00 NA 85.71 87.50 NA 85.71 85.71 NA 100.00 100.00 83.33 NA 100.00 88.89 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 88.89 100.00 85.71 100.00 83.33 NA 85.71 100.00 NA 100.00 NA 100.00 100.00 100.00 80.00 87.50 87.50 NA 100.00 80.00 NA NA 100.00 83.33 NA 85.71 K jcn_only_AD CG2003 chr3R + chr3R_27812832_27814973;chr3R_27812850_27814973 chr3R_27812907_27814973 chr3R_27814974_27815051;chr3R_27812763_27812831 0.00 2.00 3.85 0.00 0.00 0.00 0.00 1.74 1.35 NA 2.70 1.09 0.00 3.57 8.93 2.70 0.00 0.00 0.00 1.43 5.56 NA 0.00 2.44 4.55 2.17 0.00 NA NA 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 1.85 4.65 1.87 4.55 2.50 0.00 1.69 0.00 2.44 0.69 0.00 0.00 0.00 0.00 NA 1.54 0.00 0.00 0.00 K alternative_acceptor CG7145,I_chr3L_21832928_21833150,I_chr3L_21832932_21833106 chr3L - chr3L_21832928_21833150 chr3L_21832932_21833150 chr3L_21833151_21833168;chr3L_21832832_21832927 100.00 100.00 100.00 90.91 NA 100.00 100.00 93.33 95.00 NA 87.50 100.00 90.00 100.00 85.71 100.00 100.00 100.00 90.00 96.67 100.00 NA 100.00 NA NA 90.91 NA NA 100.00 NA 100.00 NA 100.00 93.33 NA NA 100.00 NA NA 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 91.67 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 K intron_retention CG7028,I_chr3L_207277_208117 chr3L - chr3L_210400_210453 chr3L_210399_210400;chr3L_210453_210454 chr3L_209784_210399;chr3L_210454_210738 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 98.21 100.00 93.33 97.50 96.15 100.00 97.06 100.00 100.00 94.74 100.00 100.00 100.00 96.15 100.00 100.00 90.91 100.00 97.30 100.00 93.75 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 96.43 96.77 100.00 100.00 100.00 95.45 96.30 100.00 100.00 100.00 96.97 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 94.44 96.00 K alternative_donor E2f,I_chr3R_17447419_17447508,CG6353 chr3R - chr3R_17447419_17448533 chr3R_17447419_17447508 chr3R_17447319_17447418;chr3R_17448534_17449373 0.24 0.32 0.00 0.31 0.00 0.00 0.33 0.77 0.39 0.00 0.00 0.52 0.56 0.51 0.40 0.47 0.69 0.00 0.57 0.17 0.00 0.33 0.24 0.31 0.00 0.00 0.00 0.00 0.44 0.00 0.47 0.00 0.00 0.68 0.36 0.38 0.00 0.33 0.00 0.43 0.00 0.48 0.00 0.00 0.32 0.34 0.00 0.47 0.78 0.00 0.24 0.75 0.00 0.00 0.00 0.00 0.29 0.00 K alternative_acceptor CG9399,I_chr3R_5403032_5403329 chr3R - chr3R_5399352_5399524;chr3R_5399318_5399524 chr3R_5399255_5399524 chr3R_5399525_5399559;chr3R_5399076_5399254 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 6.67 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 11.11 0.00 NA 0.00 0.00 NA NA NA 0.00 K multi_cassette capt,I_chr2L_1156009_1158078,I_chr2L_1153732_1154551,I_chr2L_1153732_1157370,I_chr2L_1163632_1163759 chr2L - chr2L_1153732_1155745 chr2L_1153732_1154281;chr2L_1154407_1154551;chr2L_1155054_1155745 chr2L_1154282_1154406;chr2L_1154552_1155053 chr2L_1153632_1153731;chr2L_1155746_1155788 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD RpL15 chr3LHet + chr3LHet_2398018_2398127;chr3LHet_2397859_2398127;chr3LHet_2397925_2398127;chr3LHet_2397992_2398127;chr3LHet_2398060_2398127;chr3LHet_2397841_2398127;chr3LHet_2398002_2398127;chr3LHet_2397820_2398127 chr3LHet_2398053_2398127 chr3LHet_2398128_2398454;chr3LHet_2397802_2397819 2.00 16.22 1.39 0.27 3.12 4.35 17.58 1.61 7.04 0.00 2.86 3.51 7.14 6.25 1.54 5.88 0.88 5.45 0.00 3.33 2.56 2.34 14.29 0.00 0.00 1.06 7.41 0.00 1.97 0.89 2.34 1.86 0.00 0.57 0.00 3.49 8.00 NA 8.70 0.21 1.10 1.11 1.12 0.65 0.35 0.95 4.55 0.64 2.04 7.41 7.69 13.04 0.00 17.39 0.85 12.50 9.52 0.00 K intron_retention baf,I_chr2L_8029734_8029787 chr2L + chr2L_8029734_8029815 chr2L_8029733_8029734;chr2L_8029815_8029816 chr2L_8029634_8029733;chr2L_8029816_8029887 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.45 0.30 0.00 0.00 0.27 0.00 0.00 0.00 0.58 0.00 0.00 0.44 0.00 0.00 0.31 0.00 0.14 0.00 0.42 0.62 0.76 0.18 0.20 0.00 0.00 0.24 0.16 0.00 0.00 0.26 0.00 0.00 0.00 0.30 0.11 0.00 0.15 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.39 0.30 0.34 0.11 K alternative_donor mthl3 chr2R - chr2R_13338538_13338593;chr2R_13338538_13340067;chr2R_13338538_13339957;chr2R_13338538_13340007 chr2R_13338538_13340031 chr2R_13338407_13338537;chr2R_13340068_13340078 0.00 0.00 0.00 0.00 0.00 9.09 4.00 3.45 2.70 0.00 0.00 0.00 0.00 7.14 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 4.17 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K intron_retention CG8323,CG18327 chr2R + chr2R_10053230_10053647 chr2R_10053229_10053230;chr2R_10053647_10053648 chr2R_10053094_10053229;chr2R_10053648_10054496 0.00 0.00 0.00 23.08 NA NA 0.00 12.50 0.00 NA NA 5.13 NA NA 0.00 5.56 NA 19.05 NA 0.00 NA NA 3.70 0.00 0.00 0.00 8.70 0.00 0.00 3.57 0.00 0.00 7.14 6.90 0.00 0.00 0.00 0.00 0.00 1.89 5.41 6.25 NA 0.00 3.45 4.00 0.00 5.26 3.23 7.14 0.00 0.00 0.00 0.00 0.00 0.00 14.29 5.00 K intron_retention I_chrX_15680663_15680821,Rhp chrX + chrX_15685430_15685494 chrX_15685429_15685430;chrX_15685494_15685495 chrX_15685276_15685429;chrX_15685495_15685935 0.00 NA NA 0.00 NA NA 10.00 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 NA K jcn_only_AD CG13319,RI_chr2R_8812301_8816468 chr2R + chr2R_8811853_8811926 chr2R_8811857_8811926 chr2R_8811927_8812157;chr2R_8811372_8811852 10.71 6.35 10.64 6.25 3.23 5.26 7.69 13.04 12.31 7.81 NA 12.68 12.00 10.81 15.00 13.64 13.33 10.26 17.24 3.03 25.00 7.14 6.00 18.48 14.63 8.33 12.00 10.17 6.45 4.88 8.00 5.88 18.42 18.97 5.13 5.00 10.98 13.13 7.21 13.79 8.82 18.82 12.12 15.09 14.52 3.90 9.90 6.45 18.33 13.04 10.77 13.89 12.77 14.29 2.27 5.10 9.05 5.56 K intron_retention CG8369,EI_chr3R_4647896_4648190 chr3R + chr3R_4648389_4648445 chr3R_4648388_4648389;chr3R_4648445_4648446 chr3R_4648191_4648388;chr3R_4648446_4648577 22.97 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.84 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.09 NA NA NA NA NA NA NA NA K intron_retention Pi3K59F,apt chr2R + chr2R_19450832_19450889 chr2R_19450831_19450832;chr2R_19450889_19450890 chr2R_19450470_19450831;chr2R_19450890_19451605 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 4.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.68 0.00 1.89 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Lam chr2L + chr2L_5542661_5543324 chr2L_5542660_5542661;chr2L_5543324_5543325 chr2L_5542527_5542660;chr2L_5543325_5543794 0.00 0.00 3.77 0.00 0.00 0.00 0.00 3.33 2.52 0.00 3.23 1.64 0.00 3.57 0.00 1.59 0.00 0.00 0.00 1.46 0.00 0.00 0.67 0.00 0.00 0.00 0.00 1.64 0.00 0.00 1.52 0.00 2.14 1.75 0.00 0.00 1.08 0.85 0.00 0.79 0.00 2.40 0.00 0.00 1.57 0.00 0.00 0.00 1.24 0.00 1.87 0.00 0.00 0.00 0.00 0.00 0.00 1.54 K jcn_only_AA CG5991 chr3R + chr3R_19876703_19877425;chr3R_19876703_19877411 chr3R_19876703_19877421 chr3R_19876688_19876702;chr3R_19877426_19877477 38.02 NA NA 33.33 NA NA 38.71 42.59 41.03 NA NA 37.50 NA NA 62.07 27.59 30.00 NA 32.00 55.56 NA NA NA NA NA 34.62 NA NA NA NA NA NA 32.00 38.24 NA 31.82 NA NA NA 39.47 21.74 37.21 40.91 NA NA 37.93 NA 39.13 34.78 NA 43.48 NA NA NA 45.71 NA NA 38.10 K intron_retention yata chr3R + chr3R_25577990_25578050 chr3R_25577989_25577990;chr3R_25578050_25578051 chr3R_25577870_25577989;chr3R_25578051_25578453 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.91 0.00 0.00 0.00 0.00 1.22 6.71 0.48 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL24,I_chr2L_13394941_13395015 chr2L - chr2L_13394800_13394864 chr2L_13394799_13394800;chr2L_13394864_13394865 chr2L_13394521_13394799;chr2L_13394865_13394940 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.04 0.04 0.00 0.03 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.02 0.00 0.04 0.00 0.01 0.00 0.00 0.13 0.27 0.54 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.05 0.03 0.00 0.03 0.05 0.00 0.03 0.03 0.02 0.00 0.01 0.02 0.02 N jcn_only_AA kay,noncoding_19957,E_chr3R_25616137_25617114 chr3R + chr3R_25599544_25617114 chr3R_25599544_25599635 chr3R_25598998_25599543;chr3R_25617115_25617214 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.94 0.00 0.00 0.00 5.74 0.00 8.74 0.00 0.00 0.00 0.00 0.00 11.97 14.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.19 0.00 0.00 0.00 0.00 0.00 3.69 0.00 5.19 0.00 0.00 0.00 4.03 0.00 2.33 0.00 3.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor SdhA,I_chr2R_15283283_15283411,I_chr2R_15283319_15283369 chr2R - chr2R_15283283_15283369 chr2R_15283319_15283369 chr2R_15283370_15283469;chr2R_15283219_15283282 23.08 16.00 15.79 6.56 17.50 20.00 31.25 17.65 18.18 40.00 14.81 19.05 20.00 20.00 17.07 14.29 16.67 16.22 7.50 27.87 23.08 25.00 53.33 53.57 46.15 32.00 30.43 41.67 52.63 24.00 20.59 40.91 23.08 18.92 20.83 62.50 25.00 34.62 22.03 32.81 60.00 19.05 17.14 19.57 9.52 42.31 25.93 15.00 16.95 30.77 32.43 36.00 27.27 19.23 23.08 40.00 25.00 25.00 K jcn_only_AA cora,I_chr2R_15125277_15130573,I_chr2R_15125940_15130208,I_chr2R_15129291_15129988 chr2R + chr2R_15129901_15129994 chr2R_15129901_15129988 chr2R_15129679_15129900;chr2R_15129995_15130088 98.20 98.30 97.34 98.75 99.00 98.06 98.39 98.22 98.19 98.17 98.83 98.08 99.39 98.36 98.23 99.20 98.24 98.29 99.24 98.21 98.06 98.37 97.26 98.20 99.27 98.14 97.38 95.67 96.97 97.82 97.22 98.73 98.47 98.04 98.67 97.05 97.62 98.69 98.45 98.00 98.47 98.14 98.69 97.01 98.10 98.29 98.20 98.04 98.30 97.07 99.02 97.46 97.89 98.33 97.26 98.36 98.16 97.41 K jcn_only_AD Chc,RI_chrX_15728405_15729273,I_chrX_15728405_15729401,I_chrX_15728946_15729357 chrX - chrX_15728405_15729260;chrX_15728405_15729370;chrX_15728405_15729476;chrX_15728405_15729357 chrX_15728405_15729319 chrX_15728305_15728404;chrX_15729477_15729501 9.11 9.17 10.11 13.23 10.34 9.84 9.15 8.02 9.33 11.90 7.87 6.82 8.08 10.27 7.93 8.43 5.67 10.31 12.24 9.12 10.24 4.42 9.82 5.88 6.61 10.14 8.21 10.53 19.48 6.36 8.96 9.30 5.41 7.99 9.02 12.12 10.99 16.67 3.12 10.05 2.70 9.48 6.82 8.09 NA 4.88 3.53 10.09 7.54 11.36 11.88 9.09 16.22 24.44 9.04 8.22 3.23 8.51 K intron_retention CG12304 chr3L + chr3L_15576982_15577096 chr3L_15576981_15576982;chr3L_15577096_15577097 chr3L_15576765_15576981;chr3L_15577097_15577162 25.71 12.00 26.67 33.33 10.53 20.00 30.00 23.53 21.88 36.84 NA 24.14 NA 23.08 20.00 12.50 NA NA NA 26.47 NA 36.36 23.08 15.91 44.44 54.55 38.46 47.17 56.25 25.71 57.69 28.00 24.00 14.29 23.81 19.23 25.49 24.32 15.56 28.57 56.25 25.81 28.57 26.67 31.58 44.00 9.52 57.69 19.05 31.82 21.05 22.22 9.52 31.82 18.75 26.19 10.53 29.41 K alternative_donor gro chr3R + chr3R_21868626_21868716;chr3R_21868622_21868716 chr3R_21868657_21868716 chr3R_21868717_21869101;chr3R_21868588_21868621 31.01 30.00 28.57 53.85 50.00 33.33 41.18 60.00 36.67 28.57 NA 29.17 40.00 42.86 22.22 27.78 33.33 18.75 22.22 33.33 22.22 30.77 26.32 28.57 44.44 30.00 27.78 41.18 25.00 22.22 33.33 NA 18.18 36.00 28.57 31.25 23.53 41.67 31.58 21.74 NA 33.33 50.00 38.89 NA 25.00 25.00 42.86 23.81 18.18 37.50 55.56 NA 20.00 38.46 27.27 33.33 33.33 K intron_retention RpL30,I_chr2L_19008540_19008948,REI_chr2L_19008544_19008723,I_chr2L_19008544_19008918,snoRNA:Me28S-A2113 chr2L - chr2L_19008544_19008723 chr2L_19008543_19008544;chr2L_19008723_19008724 chr2L_19008444_19008543;chr2L_19008724_19008823 5.41 6.25 13.64 6.98 11.11 10.53 6.67 12.31 7.02 3.17 8.00 6.74 11.43 6.25 3.39 8.20 12.90 4.26 9.09 4.24 4.08 6.14 3.85 3.33 3.66 6.82 10.24 14.88 6.52 3.61 3.63 2.60 4.69 13.16 3.64 2.60 4.76 5.17 2.99 3.50 7.46 8.89 10.00 1.75 0.00 6.36 3.01 1.67 12.50 5.36 2.98 3.61 7.09 3.70 6.06 3.07 5.10 5.41 K cassette dnc,I_chrX_3150245_3150319,I_chrX_3150351_3152643 chrX + chrX_3215251_3226474 chrX_3215251_3219959;chrX_3219999_3226474 chrX_3219960_3219998 chrX_3215074_3215250;chrX_3226475_3226579 17.65 15.79 25.00 20.00 30.77 17.65 12.00 22.58 14.71 NA 17.65 26.09 11.11 38.46 13.04 14.29 9.09 20.00 15.38 24.32 25.00 13.33 15.79 12.50 NA 5.56 NA NA NA NA 21.88 NA 14.29 24.24 10.53 NA 23.08 7.69 13.33 19.05 NA 19.44 46.15 NA NA NA NA NA 20.83 15.00 17.65 NA NA NA 12.90 NA NA NA K jcn_only_AD CG8334,I_chr3L_19870731_19870822 chr3L + chr3L_19870674_19871932 chr3L_19870731_19871932 chr3L_19871933_19872579;chr3L_19870631_19870673 59.81 59.38 56.25 65.77 75.61 73.33 64.79 72.84 62.00 57.69 55.26 55.29 74.29 60.00 50.94 58.18 80.49 46.51 73.17 46.73 48.57 58.43 55.56 58.54 35.71 63.64 67.24 81.25 47.37 55.93 51.39 63.64 71.59 61.54 73.68 57.14 60.42 65.31 65.22 59.38 64.44 59.63 55.26 67.14 78.72 69.23 57.14 57.94 60.61 60.87 46.81 59.38 43.59 NA 72.00 60.00 48.39 50.00 K cassette Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4847655_4849003 chrX_4847655_4848149;chrX_4848658_4849003 chrX_4848150_4848657 chrX_4847526_4847654;chrX_4849004_4849551 90.91 90.00 100.00 88.24 100.00 91.67 81.25 81.82 95.65 90.00 87.50 94.12 88.89 100.00 92.86 100.00 100.00 87.50 93.33 100.00 88.89 32.14 80.95 100.00 90.91 71.43 86.67 100.00 80.00 91.67 88.24 87.50 90.91 95.24 88.89 90.00 93.75 90.00 87.50 100.00 76.92 86.36 100.00 90.91 91.67 94.12 90.91 91.67 95.24 92.86 88.89 90.00 80.00 80.00 92.86 90.00 100.00 100.00 K intron_retention CG30046 chr2R + chr2R_8202797_8202857 chr2R_8202796_8202797;chr2R_8202857_8202858 chr2R_8202597_8202796;chr2R_8202858_8203112 10.53 13.79 16.67 9.09 2.94 3.33 7.69 12.16 7.46 4.76 10.71 13.16 8.33 16.67 5.26 15.00 10.53 6.45 10.53 12.12 13.89 10.53 17.65 14.81 NA 4.35 6.25 NA 15.00 11.11 14.29 22.22 6.67 14.00 0.00 13.64 0.00 NA 0.00 17.78 6.25 12.31 10.00 0.00 12.50 0.00 9.09 17.07 11.84 6.25 15.15 9.09 6.67 20.00 14.04 3.57 4.94 11.34 K intron_retention mod(r),RI_chrX_515831_515923,I_chrX_516392_517480 chrX + chrX_516392_516478 chrX_516391_516392;chrX_516478_516479 chrX_516292_516391;chrX_516479_517065 20.00 NA 0.00 NA NA NA 30.77 26.32 17.65 NA NA 22.22 NA NA NA 22.22 NA 7.14 NA 22.73 NA 16.67 NA NA NA NA NA NA 22.73 NA NA 33.33 13.04 22.22 NA NA 18.75 NA NA 29.41 33.33 13.64 NA NA 5.00 15.62 20.00 25.00 18.18 22.22 35.71 NA 14.29 NA 0.00 14.29 21.05 6.67 K cassette Ctr1A chrX + chrX_6555835_6559032 chrX_6555835_6556272;chrX_6556375_6559032 chrX_6556273_6556374 chrX_6555724_6555834;chrX_6559033_6559111 37.78 22.64 53.12 37.50 29.63 41.67 35.56 34.43 34.51 21.15 41.67 37.21 31.25 43.33 37.78 51.22 44.12 61.29 46.88 50.88 56.67 33.87 21.74 28.33 45.83 64.71 22.03 21.05 36.67 27.03 40.00 52.63 38.81 45.10 45.45 64.29 16.50 23.08 37.78 44.26 44.00 33.82 40.74 19.75 73.08 47.37 29.41 48.65 47.17 26.23 29.79 17.95 36.00 42.31 42.11 25.93 19.10 45.57 K alternative_donor CG9705,I_chr3L_16773492_16773604,I_chr3L_16773517_16773604,I_chr3L_16774043_16774562 chr3L + chr3L_16773521_16773604;chr3L_16773492_16773604 chr3L_16773517_16773604 chr3L_16773605_16773704;chr3L_16773417_16773491 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 2.56 0.00 2.00 0.00 0.00 0.00 2.82 0.00 0.00 0.00 1.89 0.00 0.00 2.13 0.00 0.00 0.00 0.85 0.00 0.00 1.96 0.00 0.00 0.00 1.92 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Myb,RI_chrX_15752571_15753225 chrX - chrX_15751579_15751673;chrX_15751579_15751682;chrX_15751579_15751749 chrX_15751579_15751709 chrX_15749823_15751578;chrX_15751750_15751876 3.12 3.85 0.00 5.17 8.00 3.57 6.67 1.32 1.16 0.00 3.85 0.00 2.56 2.50 2.86 1.10 5.26 3.45 2.08 4.49 10.71 3.12 2.44 0.00 0.00 3.23 3.45 5.88 4.35 3.70 0.00 4.55 2.33 1.27 4.55 0.00 3.33 0.00 0.00 1.79 5.26 3.85 2.70 2.63 4.35 0.00 0.00 0.00 3.33 6.67 0.00 3.85 4.76 7.14 2.04 4.76 5.00 1.72 K jcn_only_AA fbp,I_chr2L_19762832_19763529,RI_chr2L_19763745_19764069 chr2L - chr2L_19763745_19764069;chr2L_19763498_19764069 chr2L_19762832_19764069 chr2L_19764070_19764120 26.92 NA 40.00 55.56 NA NA NA 41.67 27.27 3.45 NA 18.52 NA NA NA 24.00 NA NA 91.30 37.04 NA 16.67 NA 22.58 NA NA NA NA NA NA 13.79 NA 26.92 26.92 NA NA 22.22 NA 33.33 10.53 NA 27.59 45.45 13.33 NA 28.57 NA 41.38 37.50 36.00 17.86 NA NA 25.00 31.25 NA 22.73 16.00 N multi_cassette CG12065,CE_chrX_8469528_8477573 chrX + chrX_8478609_8481290 chrX_8478609_8478875;chrX_8478957_8479842;chrX_8479952_8480018;chrX_8480279_8481290 chrX_8478876_8478956;chrX_8479843_8479951;chrX_8480019_8480278 chrX_8478489_8478608;chrX_8481291_8481558 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor l(2)gl,I_chr2L_17213_21135,RI_chr2L_20021_20830,I_chr2L_20974_21065 chr2L - chr2L_20021_21065;chr2L_20021_21135 chr2L_20021_20830 chr2L_19921_20020;chr2L_21136_21145 8.85 NA NA 12.50 NA NA 12.50 11.11 6.67 NA NA 10.00 NA NA NA 0.00 NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 7.69 NA NA NA NA NA NA NA 10.00 0.00 14.29 NA NA NA 0.00 7.69 NA NA NA NA NA NA NA NA NA K jcn_only_AA RpS3A,I_chr4_87364_87465,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87648_87717;chr4_87549_87717 chr4_87533_87717 chr4_87718_87817;chr4_87466_87532 29.03 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 29.03 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention WASp,I_chr3R_24656400_24656715,I_chr3R_24656400_24656880,I_chr3R_24656400_24657416 chr3R - chr3R_24656400_24657416 chr3R_24656399_24656400;chr3R_24657416_24657417 chr3R_24656300_24656399;chr3R_24657417_24657516 90.84 NA NA 71.43 NA NA 100.00 NA 91.67 NA NA 100.00 NA NA NA NA NA NA NA 92.86 NA 91.67 NA NA NA NA 100.00 72.73 90.00 NA 100.00 NA 90.00 88.89 NA 100.00 NA NA NA 73.33 87.50 88.89 NA NA NA NA NA 88.89 92.86 NA 88.89 NA NA NA NA NA NA 100.00 K intron_retention drd chrX + chrX_15030524_15030594 chrX_15030523_15030524;chrX_15030594_15030595 chrX_15030375_15030523;chrX_15030595_15031278 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 5.88 14.29 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA 0.00 5.00 NA NA NA NA NA NA NA NA K intron_retention 14-3-3epsilon,I_chr3R_14068632_14073155,RI_chr3R_14074062_14074138 chr3R + chr3R_14073625_14073692 chr3R_14073624_14073625;chr3R_14073692_14073693 chr3R_14073211_14073624;chr3R_14073693_14073873 0.00 0.00 0.08 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.07 0.00 K intron_retention eIF2B-delta chr2R + chr2R_19275136_19275194 chr2R_19275135_19275136;chr2R_19275194_19275195 chr2R_19274530_19275135;chr2R_19275195_19275755 0.00 0.00 0.00 6.15 0.00 0.00 5.56 7.46 1.82 0.00 0.00 5.63 0.00 0.00 0.00 0.00 3.03 0.00 0.00 2.74 0.00 0.00 2.83 1.02 0.00 7.69 3.45 0.00 1.45 0.00 1.82 0.00 0.99 0.00 1.45 1.43 0.00 0.00 0.00 0.00 3.12 4.60 0.00 0.00 2.63 4.42 0.00 0.00 0.00 0.79 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention PP2A-B',RI_chr3R_13993929_13994503 chr3R + chr3R_13993590_13995205 chr3R_13993589_13993590;chr3R_13995205_13995206 chr3R_13993510_13993589;chr3R_13995206_13995270 19.05 30.77 NA 16.67 NA NA 11.76 15.15 16.67 NA NA 14.29 NA 3.85 11.76 12.24 23.08 NA 17.65 20.83 NA 26.32 46.15 15.00 23.08 13.33 NA NA 53.85 NA 5.00 NA 37.50 19.35 NA NA NA NA NA 18.18 35.71 19.35 19.23 40.91 NA NA NA 31.82 13.51 NA 19.05 14.29 NA NA 18.52 NA 25.00 50.00 K intron_retention rho-7,noncoding_6143 chr2R - chr2R_7876069_7876123 chr2R_7876068_7876069;chr2R_7876123_7876124 chr2R_7876008_7876068;chr2R_7876124_7876254 56.44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 54.55 NA NA NA NA NA NA 58.33 NA 6.25 NA NA NA NA 70.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG4686 chr3R + chr3R_15690648_15690710 chr3R_15690647_15690648;chr3R_15690710_15690711 chr3R_15690125_15690647;chr3R_15690711_15691019 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.21 0.00 0.00 0.00 4.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 1.48 1.49 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.02 0.00 0.00 0.00 2.20 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Uch,CG10880 chr2L - chr2L_2213959_2214027 chr2L_2213958_2213959;chr2L_2214027_2214028 chr2L_2213896_2213958;chr2L_2214028_2214049 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 96.30 100.00 100.00 K jcn_only_AA CG17514 chr2RHet + chr2RHet_2775916_2775978 chr2RHet_2775916_2775968 chr2RHet_2775909_2775915;chr2RHet_2775979_2776071 93.06 NA 94.59 91.04 NA 96.15 91.36 93.06 89.19 NA NA 93.33 93.48 95.74 100.00 95.52 96.30 82.61 92.16 91.30 NA NA NA NA NA 90.48 NA NA NA NA 94.74 NA NA 93.44 NA NA NA NA NA 90.48 NA 91.18 93.55 NA NA NA NA NA 90.91 NA NA NA NA NA 92.11 NA NA NA K jcn_only_AA I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_927233_927699,RI_chr4_927771_929704,CG32021,RI_chr4_928180_928245,RI_chr4_928193_928245,I_chr4_928482_929704,noncoding_20815,I_chr4_929811_932812 chr4 - chr4_928482_929704;chr4_928551_929704 chr4_927771_929704 chr4_929705_929804;chr4_927741_927770 12.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.71 NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention shtd chrX - chrX_15351477_15351535 chrX_15351476_15351477;chrX_15351535_15351536 chrX_15351042_15351476;chrX_15351536_15353580 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 9.09 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette B4,REI_chr2L_13509793_13534906,EI_chr2L_13513471_13534906,I_chr2L_13513474_13549131,I_chr2L_13547304_13549131 chr2L - chr2L_13513474_13549131 chr2L_13513474_13534906;chr2L_13535027_13549131 chr2L_13534907_13535026 chr2L_13513374_13513473;chr2L_13549132_13549231 90.91 100.00 NA 100.00 100.00 85.71 83.33 100.00 92.31 NA NA 100.00 100.00 100.00 85.71 90.00 100.00 100.00 100.00 92.31 NA 80.00 88.89 100.00 85.71 NA 90.00 90.91 85.71 71.43 85.71 80.00 39.13 90.91 NA 100.00 100.00 NA 92.31 100.00 NA 100.00 87.50 100.00 83.33 88.89 88.89 66.67 90.91 90.00 100.00 100.00 100.00 83.33 83.33 100.00 90.00 77.78 K cassette scarface,I_chr2R_1568023_1575180 chr2R - chr2R_1568023_1575180 chr2R_1568023_1572308;chr2R_1572483_1575180 chr2R_1572309_1572482 chr2R_1567923_1568022;chr2R_1575181_1575280 100.00 98.89 100.00 96.48 100.00 98.36 100.00 98.65 99.31 100.00 100.00 99.25 100.00 98.39 98.48 100.00 97.87 98.46 100.00 99.31 100.00 99.47 100.00 99.16 98.70 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.63 99.37 99.02 99.27 100.00 95.00 99.28 100.00 99.25 100.00 99.03 100.00 99.12 100.00 100.00 100.00 98.68 98.33 100.00 100.00 100.00 98.46 98.31 N jcn_only_AD CG8531,RI_chr2R_10144869_10144912 chr2R + chr2R_10145138_10145276;chr2R_10145070_10145276 chr2R_10145224_10145276 chr2R_10145277_10145393;chr2R_10144926_10145069 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.16 90.79 100.00 100.00 95.18 100.00 100.00 100.00 92.45 100.00 100.00 100.00 95.69 100.00 76.79 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 71.24 100.00 100.00 94.30 100.00 100.00 100.00 87.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.04 82.17 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N cassette crol,I_chr2L_11799403_11802904 chr2L - chr2L_11800323_11803784 chr2L_11800323_11802904;chr2L_11803675_11803784 chr2L_11802905_11803674 chr2L_11800155_11800322;chr2L_11803785_11803898 100.00 100.00 100.00 95.70 100.00 100.00 100.00 96.20 97.98 100.00 100.00 100.00 100.00 100.00 94.77 100.00 100.00 100.00 100.00 97.08 100.00 97.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.70 96.91 97.49 98.03 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 95.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG12746,I_chr3R_1391015_1391809,I_chr3R_1391178_1391809,I_chr3R_1391690_1391809,Rheb chr3R + chr3R_1390705_1391809 chr3R_1390747_1391809 chr3R_1391810_1391909;chr3R_1390681_1390704 80.35 NA NA NA NA NA NA 85.71 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention sec8 chr3R - chr3R_1582991_1583060 chr3R_1582990_1582991;chr3R_1583060_1583061 chr3R_1582866_1582990;chr3R_1583061_1583811 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 2.67 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG3632,RI_chrX_16195880_16196242 chrX + chrX_16190824_16191693;chrX_16190917_16191693 chrX_16190941_16191693 chrX_16191694_16191751;chrX_16190763_16190823 33.81 23.08 14.29 22.22 40.00 25.00 34.38 32.43 35.00 NA 18.18 21.21 37.50 20.00 23.81 27.78 33.33 35.71 31.58 34.29 30.77 41.67 27.27 40.00 38.46 35.71 35.71 41.67 42.86 50.00 27.27 42.86 28.57 39.39 42.86 30.00 17.65 33.33 33.33 30.77 NA 28.95 28.57 38.46 50.00 58.33 30.00 38.46 36.36 42.86 31.58 12.50 50.00 NA 36.84 18.18 38.46 58.33 K intron_retention CG14778 chrX + chrX_1364131_1364189 chrX_1364130_1364131;chrX_1364189_1364190 chrX_1364048_1364130;chrX_1364190_1364372 77.78 NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA 69.23 NA NA NA NA NA NA NA NA NA NA 77.78 NA NA NA NA NA 80.00 NA NA NA NA 63.64 NA NA 64.29 87.50 NA 72.73 NA NA NA NA NA NA NA NA NA 87.50 K intron_retention Ptp99A,I_chr3R_25302126_25302175 chr3R + chr3R_25302126_25307188 chr3R_25302125_25302126;chr3R_25307188_25307189 chr3R_25302026_25302125;chr3R_25307189_25307478 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention fw chrX - chrX_11888764_11888847 chrX_11888763_11888764;chrX_11888847_11888848 chrX_11888724_11888763;chrX_11888848_11888960 50.00 60.00 NA NA NA NA NA NA 45.00 NA NA 40.00 NA NA NA NA NA NA NA 46.15 NA 9.52 60.00 55.56 NA NA 50.00 NA NA NA 73.33 NA NA NA NA 28.57 50.00 NA 33.33 47.06 NA 50.00 NA 52.94 72.73 63.64 46.67 NA 50.00 46.67 50.00 60.00 76.47 50.00 60.00 50.00 58.82 NA K jcn_only_AD MED1 chr3L - chr3L_21623014_21624037 chr3L_21623014_21624032 chr3L_21621425_21623013;chr3L_21624038_21625939 100.00 100.00 NA NA NA NA NA NA 100.00 100.00 NA 96.00 NA NA NA NA NA NA NA 96.15 NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 NA 100.00 97.53 NA 96.15 100.00 96.97 100.00 100.00 100.00 100.00 NA NA 100.00 98.44 98.18 100.00 98.86 96.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 K alternative_donor woc,I_chr3R_23089174_23089688,I_chr3R_23089174_23089695,I_chr3R_23096096_23096561 chr3R - chr3R_23089174_23089688;chr3R_23089174_23089498 chr3R_23089174_23089695 chr3R_23089074_23089173;chr3R_23089696_23089772 1.52 1.79 1.35 2.80 1.61 2.04 3.16 0.88 2.35 0.00 1.72 0.68 1.47 0.00 1.19 0.93 1.75 4.76 2.53 2.87 1.61 13.95 2.44 1.56 0.00 1.52 0.00 0.00 0.00 0.00 1.08 0.00 0.00 1.69 2.27 0.00 1.64 4.26 1.54 0.84 2.63 1.43 0.00 1.56 2.44 2.63 0.00 2.91 0.68 0.00 0.00 0.00 0.00 0.00 4.35 0.00 3.12 1.92 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2389073;chrX_2389272_2389644;chrX_2389762_2392054;chrX_2392149_2392515;chrX_2392665_2393243 chrX_2389074_2389271;chrX_2389645_2389761;chrX_2392055_2392148;chrX_2392516_2392664 chrX_2387149_2387248;chrX_2393244_2393291 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG17490 chr2L + chr2L_22431301_22432684 chr2L_22431300_22431301;chr2L_22432684_22432685 chr2L_22431022_22431300;chr2L_22432685_22433056 90.00 82.14 94.12 91.18 94.12 86.21 100.00 84.21 88.41 88.89 55.00 91.30 96.00 87.88 95.83 98.88 96.43 92.31 92.50 84.00 78.95 95.45 81.82 91.67 90.91 78.95 95.00 91.67 94.44 66.67 81.82 92.31 76.19 91.07 95.65 83.33 93.75 73.33 85.71 89.47 90.00 83.33 81.25 80.00 95.00 85.00 96.15 80.95 90.00 95.00 96.15 80.95 94.74 93.33 88.24 82.61 83.87 73.17 K alternative_donor RpL10Ab,snoRNA:Psi18S-920 chr3L + chr3L_11815991_11816299 chr3L_11816042_11816299 chr3L_11816300_11816370;chr3L_11815955_11815990 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.07 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.14 0.00 0.00 0.00 0.00 NA 0.00 0.08 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.04 0.00 0.00 0.00 0.07 0.00 1.61 0.00 0.00 NA 0.00 0.00 0.00 0.03 K alternative_acceptor Zyx102EF,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1081280_1081366;chr4_1081261_1081366 chr4_1081286_1081366 chr4_1081367_1081379;chr4_1081180_1081260 21.05 NA NA 16.67 NA NA 21.05 20.00 25.93 NA NA 28.57 8.33 NA NA 28.57 NA NA 25.00 18.75 NA NA NA NA NA NA NA NA NA NA 15.38 NA NA 23.53 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA K mutually_exclusive vib,RI_chr3R_15051793_15052186 chr3R - chr3R_15044234_15044690,chr3R_15044769_15044910 chr3R_15044234_15044405,chr3R_15044487_15044910 chr3R_15044691_15044768 chr3R_15044406_15044486 chr3R_15044124_15044233;chr3R_15044911_15045062 2.88 1.98 2.17 1.54 4.41 2.94 2.88 3.97 3.33 0.00 0.00 2.19 10.94 5.63 2.86 2.54 4.05 4.76 2.33 3.43 1.30 5.41 3.65 3.97 4.11 0.00 4.42 9.09 7.55 2.60 2.56 3.64 1.85 1.71 6.67 5.06 3.79 2.15 1.75 2.99 4.76 2.84 1.61 3.19 4.88 1.72 0.72 6.58 1.95 2.02 2.80 4.82 0.00 3.81 2.73 3.64 0.58 2.15 K multi_cassette CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261460_265805 chr4_261460_263086;chr4_263306_263795;chr4_264212_264259;chr4_264375_265805 chr4_263087_263305;chr4_263796_264211;chr4_264260_264374 chr4_261360_261459;chr4_265806_265905 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG15514 chr3R - chr3R_25686337_25686428 chr3R_25686358_25686428 chr3R_25686429_25687281;chr3R_25685755_25686336 50.57 57.26 44.63 63.04 54.13 61.48 67.55 44.87 47.85 50.57 51.40 55.85 50.88 44.76 52.99 49.63 58.02 52.50 57.00 49.75 50.00 70.59 46.32 47.33 45.68 67.18 47.10 41.56 53.98 50.00 42.98 43.30 42.97 45.34 54.72 70.59 41.57 58.18 41.88 57.96 56.60 52.94 50.00 50.00 44.85 49.33 48.06 50.00 41.85 47.25 52.82 53.49 59.22 52.59 55.91 54.27 50.30 65.00 K intron_retention Arp66B chr3L - chr3L_8107152_8107212 chr3L_8107151_8107152;chr3L_8107212_8107213 chr3L_8106588_8107151;chr3L_8107213_8107296 0.00 0.00 0.47 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 1.03 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2436229_2439576 chr3L_2436229_2439498 chr3L_2436209_2436228;chr3L_2439577_2439583 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG17159,CG17162,noncoding_25215 chrXHet - chrXHet_66049_66121 chrXHet_66048_66049;chrXHet_66121_66122 chrXHet_64549_66048;chrXHet_66122_66324 73.17 77.55 63.46 91.67 63.16 78.38 73.61 73.26 68.10 67.57 73.53 60.00 71.88 72.73 68.33 79.73 69.23 73.17 74.07 71.30 75.76 72.22 80.30 64.41 75.00 81.03 91.67 91.30 88.57 64.58 60.00 65.62 66.67 69.74 65.12 76.47 78.57 62.96 75.00 64.71 76.92 77.78 67.44 74.55 87.88 64.15 73.68 67.82 71.60 81.25 77.55 74.47 71.79 80.00 67.19 71.11 90.00 62.50 K jcn_only_AD CG3884,I_chr2R_8837592_8837657 chr2R - chr2R_8837592_8839677 chr2R_8837592_8837657 chr2R_8837492_8837591;chr2R_8839678_8839836 1.68 2.94 3.12 1.52 8.70 2.17 0.00 0.00 1.37 6.90 0.00 17.39 NA 0.00 0.00 0.00 4.35 3.45 0.00 1.11 2.94 0.00 0.00 2.13 2.13 0.00 2.00 3.85 0.00 0.00 1.75 0.00 NA 3.85 0.00 0.00 4.55 0.00 0.00 1.67 NA 1.69 4.17 3.28 2.94 3.12 3.70 0.00 0.00 0.00 0.00 0.00 8.57 8.33 1.89 3.12 0.00 4.00 K intron_retention CG4589,I_chr2R_20402394_20402706 chr2R - chr2R_20398317_20398376 chr2R_20398316_20398317;chr2R_20398376_20398377 chr2R_20398020_20398316;chr2R_20398377_20400694 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.85 0.00 3.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette pho,RI_chr4_1193657_1194431,I_chr4_1193830_1194784,EI_chr4_1193830_1195360,RI_chr4_1193830_1195384,I_chr4_1193830_1201673 chr4 - chr4_1193830_1194784 chr4_1193830_1194431;chr4_1194724_1194784 chr4_1194432_1194723 chr4_1193730_1193829;chr4_1194785_1194884 96.59 96.77 95.24 92.75 96.15 93.10 94.52 96.59 95.24 100.00 96.00 96.72 97.92 95.45 100.00 97.75 97.44 100.00 95.24 90.28 95.24 100.00 95.00 100.00 94.44 89.47 97.14 100.00 78.95 100.00 97.83 94.74 94.44 95.18 95.83 95.45 100.00 100.00 100.00 89.74 95.65 94.87 97.67 97.06 95.65 100.00 100.00 92.86 98.95 97.37 100.00 93.75 100.00 95.65 95.65 100.00 97.50 97.56 K alternative_donor lgs,RI_chr4_463390_463489 chr4 - chr4_459792_460088 chr4_459792_460073 chr4_459601_459791;chr4_460089_462077 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 94.74 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 94.74 NA 97.14 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 92.31 100.00 K alternative_acceptor CG8177,E_chr3L_9756800_9772650,RI_chr3L_9757294_9758708,I_chr3L_9773534_9773635,I_chr3L_9774319_9774602 chr3L + chr3L_9757294_9764754 chr3L_9757294_9758708 chr3L_9757194_9757293;chr3L_9764755_9765019 0.00 0.00 0.00 2.08 0.00 0.00 0.00 2.44 1.49 0.00 0.00 2.70 0.00 0.00 0.00 2.56 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 K intron_retention CG9577,CG9578 chrX + chrX_20061153_20061223 chrX_20061152_20061153;chrX_20061223_20061224 chrX_20060990_20061152;chrX_20061224_20061848 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 2.63 5.08 2.47 5.13 0.00 3.57 8.57 5.41 0.00 6.12 0.00 4.44 0.00 0.00 0.00 2.78 4.62 1.43 2.88 6.45 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 3.77 K alternative_last_exon noncoding_21282,RI_chrX_941459_976499,I_chrX_941459_982652,CG14629 chrX + chrX_941459_982652 chrX_941459_982554 chrX_982653_982899 chrX_982555_982604 chrX_941359_941458 69.23 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 69.23 K intron_retention CG18317,RI_chr2L_1718492_1723881,I_chr2L_1718904_1718995,RI_chr2L_1718904_1724234 chr2L - chr2L_1718904_1723881 chr2L_1718903_1718904;chr2L_1723881_1723882 chr2L_1718804_1718903;chr2L_1723882_1723981 0.00 2.27 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.35 0.00 NA 0.00 NA 0.00 0.00 0.00 1.75 0.00 3.57 2.70 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 K jcn_only_AD CG5608 chr3R - chr3R_8288525_8288579 chr3R_8288525_8288577 chr3R_8288136_8288524;chr3R_8288580_8288820 97.94 100.00 100.00 96.97 NA NA 96.15 97.62 95.65 NA NA 100.00 NA NA 95.65 94.87 100.00 100.00 100.00 95.35 91.67 100.00 100.00 100.00 NA 100.00 98.00 NA NA NA 100.00 NA NA 97.73 96.00 100.00 NA 100.00 100.00 100.00 NA 97.62 100.00 100.00 100.00 95.83 97.67 NA 96.88 96.97 97.50 95.65 NA 95.56 97.06 97.87 100.00 NA K alternative_acceptor SWAP,RI_chrX_936466_936762,I_chrX_936466_936835,RI_chrX_938935_938985,I_chrX_941459_982652 chrX + chrX_936466_936835;chrX_936466_936966 chrX_936466_936762 chrX_936366_936465;chrX_936967_937018 50.00 66.67 66.67 40.00 33.33 28.57 41.18 62.50 59.09 33.33 NA 50.00 57.14 42.86 50.00 NA 62.50 33.33 70.00 40.00 NA 50.00 42.86 33.33 NA NA 50.00 NA 33.33 40.00 45.45 75.00 42.86 57.14 50.00 NA 33.33 80.00 50.00 37.50 11.11 55.56 NA 83.33 60.00 44.44 60.00 50.00 50.00 54.55 38.46 75.00 100.00 50.00 60.00 14.29 60.00 44.44 K intron_retention CG4896,REI_chr2L_1179197_1179859,I_chr2L_1191535_1191648 chr2L + chr2L_1179197_1179859 chr2L_1179196_1179197;chr2L_1179859_1179860 chr2L_1179127_1179196;chr2L_1179860_1179937 34.31 NA NA 5.56 NA NA NA 42.11 41.18 NA NA 43.75 NA NA NA NA NA NA NA 35.71 NA NA 30.77 13.33 NA NA NA NA NA NA 16.67 NA NA 33.33 NA 9.09 17.39 NA NA 40.00 NA 37.50 NA NA NA NA 50.00 28.57 27.27 NA 35.29 NA NA NA 38.46 NA NA NA K alternative_donor CG12162,I_chr3R_1293876_1293924,I_chr3R_1294319_1294410 chr3R + chr3R_1293872_1293924 chr3R_1293876_1293924 chr3R_1293925_1294024;chr3R_1293776_1293871 0.00 1.96 6.67 2.94 0.00 0.00 0.00 4.44 0.00 0.00 0.00 1.59 NA 0.00 0.00 0.00 0.00 0.00 0.00 4.29 0.00 3.03 2.67 2.38 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 3.37 0.00 0.00 3.33 0.00 1.27 1.23 0.97 3.92 1.43 NA 0.00 0.00 1.03 0.00 1.54 1.69 1.85 0.00 0.00 0.00 1.64 0.00 1.59 0.00 1.39 K intron_retention Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8089737_8105691 chr2L_8089736_8089737;chr2L_8105691_8105692 chr2L_8089558_8089736;chr2L_8105692_8105782 0.00 0.00 0.00 0.00 0.32 0.00 0.25 0.32 0.19 0.00 0.00 0.51 0.00 0.00 0.00 0.48 0.38 0.00 0.00 0.37 0.00 0.00 0.39 0.00 0.00 0.23 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.12 0.00 0.41 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor ifc,I_chr2L_5986893_5987347,RI_chr2L_5987175_5987347,noncoding_1271 chr2L + chr2L_5986893_5987615 chr2L_5986893_5987347 chr2L_5986793_5986892;chr2L_5987616_5987779 4.23 5.29 2.53 4.31 2.00 2.63 4.36 3.67 4.59 5.56 3.68 3.91 6.87 3.49 3.91 6.47 3.31 5.10 5.28 4.68 4.23 4.07 5.31 4.04 5.37 1.33 4.41 8.79 3.51 5.38 4.33 5.94 4.83 4.37 3.59 4.51 3.67 3.83 2.65 4.15 4.29 3.49 4.07 5.26 3.70 4.76 3.09 6.93 4.26 4.96 3.17 5.19 2.15 2.86 2.88 4.23 2.87 4.49 K intron_retention ham chr2L - chr2L_18769192_18771252 chr2L_18769191_18769192;chr2L_18771252_18771253 chr2L_18769035_18769191;chr2L_18771253_18771397 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 K intron_retention Vha100-1,I_chr3R_24958227_24960770,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24960321_24960770 chr3R_24960320_24960321;chr3R_24960770_24960771 chr3R_24960279_24960320;chr3R_24960771_24960870 25.00 NA NA 20.00 NA NA NA 7.14 38.46 NA NA 14.29 NA NA NA NA NA NA NA 20.00 NA 50.00 30.43 21.43 28.57 NA NA NA NA NA NA NA NA NA NA 16.67 25.00 NA 33.33 NA NA 25.00 NA NA 20.00 NA NA NA NA NA 38.46 NA NA NA NA NA NA NA K intron_retention ens,I_chr3L_4130719_4131120 chr3L - chr3L_4127163_4128307 chr3L_4127162_4127163;chr3L_4128307_4128308 chr3L_4126989_4127162;chr3L_4128308_4128373 39.02 NA NA NA NA NA NA NA NA NA NA 27.50 NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA 46.67 41.67 NA 36.36 NA NA NA NA NA NA NA K alternative_donor HP4,I_chr3L_7968788_7968857 chr3L - chr3L_7968788_7968861 chr3L_7968788_7968857 chr3L_7968688_7968787;chr3L_7968862_7968957 0.00 0.54 0.62 0.39 0.00 0.00 1.09 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.72 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.37 0.00 0.00 0.00 0.39 0.00 0.47 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 K alternative_last_exon CG33691_CG33692,CG33691,noncoding_22320 chrX + chrX_6766955_6771946 chrX_6766955_6768354 chrX_6771947_6772516 chrX_6768355_6768589 chrX_6766749_6766954 22.73 18.57 22.95 21.79 18.18 21.43 17.46 31.58 25.00 13.11 45.00 21.10 21.95 28.57 22.95 35.59 26.53 34.92 30.51 22.05 33.96 7.35 17.65 15.91 8.70 15.38 14.29 13.83 19.28 15.12 18.87 34.62 25.77 24.49 21.43 7.59 9.72 12.77 10.26 29.57 25.58 21.21 28.89 23.33 23.73 36.11 22.73 24.51 20.95 38.03 14.85 17.54 25.58 26.67 23.38 26.23 34.09 39.51 K intron_retention Pk61C chr3L + chr3L_142880_142942 chr3L_142879_142880;chr3L_142942_142943 chr3L_141895_142879;chr3L_142943_143217 0.00 0.00 0.00 1.30 0.00 0.00 0.00 1.19 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD DMAP1,I_chr2R_16531774_16531833,I_chr2R_16532870_16532932 chr2R + chr2R_16532870_16532932 chr2R_16532874_16532932 chr2R_16532933_16533032;chr2R_16532770_16532869 98.55 98.11 97.92 98.44 98.00 100.00 97.78 100.00 100.00 100.00 100.00 97.62 100.00 97.14 97.83 95.00 100.00 95.24 97.73 98.51 100.00 100.00 98.77 98.65 100.00 97.67 95.59 98.21 100.00 97.83 94.74 100.00 98.48 100.00 100.00 97.22 95.08 100.00 100.00 95.59 98.28 94.94 94.12 97.06 98.44 98.63 98.81 100.00 100.00 98.94 98.53 100.00 96.55 100.00 100.00 98.55 100.00 100.00 K jcn_only_AD CG1275,I_chr3L_2261108_2261339 chr3L - chr3L_2253272_2253328 chr3L_2253272_2253324 chr3L_2252785_2253271;chr3L_2253329_2253692 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.29 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 K alternative_donor larp,F_chr3R_24151542_24153876,I_chr3R_24160430_24160932,I_chr3R_24160430_24160971,RI_chr3R_24160430_24161527 chr3R - chr3R_24160430_24160932;chr3R_24160430_24160971;chr3R_24160430_24160975;chr3R_24160430_24160979;chr3R_24160430_24161939;chr3R_24160430_24161527 chr3R_24160430_24161729 chr3R_24160330_24160429;chr3R_24161940_24162125 73.00 78.21 72.83 80.69 73.33 72.97 79.08 81.98 78.34 69.44 75.41 76.14 78.95 79.78 73.86 74.17 79.49 77.38 77.17 75.62 75.00 70.30 69.30 68.69 66.67 74.32 74.23 81.20 48.00 69.62 75.00 68.97 73.03 78.12 71.21 65.79 66.32 65.22 73.00 64.34 73.08 73.63 78.12 63.01 59.09 65.00 77.94 59.50 70.25 71.88 65.69 68.00 63.33 72.73 75.96 71.74 72.34 58.76 K jcn_only_AA SelR,I_chr3R_6692390_6692530,I_chr3R_6692461_6692530,I_chr3R_6694098_6694160 chr3R - chr3R_6692416_6692530 chr3R_6692461_6692530 chr3R_6692531_6692630;chr3R_6692361_6692415 0.00 1.14 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 3.16 6.35 0.00 0.00 0.00 2.56 1.28 0.00 0.00 0.74 0.00 1.18 0.00 0.00 2.08 0.00 1.79 0.00 1.12 1.08 0.98 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.54 K intron_retention CG17119,sav chr3R - chr3R_18881861_18881920 chr3R_18881860_18881861;chr3R_18881920_18881921 chr3R_18881764_18881860;chr3R_18881921_18882048 1.12 0.00 2.73 1.16 0.00 0.00 0.00 0.66 0.77 0.00 0.00 1.12 0.00 0.00 1.83 0.79 1.06 0.00 0.00 0.00 0.00 4.12 1.55 1.28 0.00 0.85 5.07 14.29 7.46 1.19 1.54 2.70 1.96 0.00 1.61 2.70 1.05 1.75 2.41 2.16 3.03 0.00 0.00 1.42 0.00 2.33 0.93 2.80 0.51 3.05 2.26 0.00 0.00 2.41 0.80 1.60 1.30 1.99 K intron_retention CG6621 chr3R - chr3R_6718574_6718636 chr3R_6718573_6718574;chr3R_6718636_6718637 chr3R_6718362_6718573;chr3R_6718637_6719133 0.00 0.00 0.00 0.00 NA 0.00 4.55 0.00 3.85 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 4.00 21.74 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 2.63 NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 K intron_retention CG7830 chr2L - chr2L_8307874_8307982 chr2L_8307873_8307874;chr2L_8307982_8307983 chr2L_8307147_8307873;chr2L_8307983_8308265 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 1.03 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention tnc,beta4GalT7,Hr96 chr3R + chr3R_20849189_20849249 chr3R_20849188_20849189;chr3R_20849249_20849250 chr3R_20848918_20849188;chr3R_20849250_20849871 6.06 0.00 0.00 6.90 5.88 0.00 3.33 0.00 12.20 5.56 0.00 2.63 9.09 NA 8.33 12.00 0.00 0.00 NA 11.76 0.00 15.38 9.76 7.84 9.68 14.29 5.56 8.33 8.00 8.00 19.23 5.26 8.16 4.55 7.41 6.25 3.64 6.67 3.70 6.94 7.69 4.44 NA 1.59 1.64 6.45 8.89 2.70 0.00 15.15 3.57 13.79 0.00 10.00 7.41 5.17 0.00 3.12 K intron_retention jagn chr3R + chr3R_1605895_1605956 chr3R_1605894_1605895;chr3R_1605956_1605957 chr3R_1605522_1605894;chr3R_1605957_1606289 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7188 chr3L - chr3L_8301646_8301795 chr3L_8301645_8301646;chr3L_8301795_8301796 chr3L_8301192_8301645;chr3L_8301796_8302038 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 1.69 0.00 0.36 0.00 0.00 0.29 1.79 0.00 0.00 0.85 0.00 0.00 0.28 0.00 0.00 0.00 0.93 0.57 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD bowl,RI_chr2L_3772695_3773616 chr2L + chr2L_3771874_3772460;chr2L_3771755_3772460 chr2L_3771785_3772460 chr2L_3772461_3772694;chr2L_3771707_3771754 76.67 NA NA NA NA NA 70.83 68.18 76.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 78.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.48 NA NA NA K cassette CG31145,I_chr3R_19444761_19448092,I_chr3R_19452259_19452318 chr3R - chr3R_19442045_19452318 chr3R_19442045_19448092;chr3R_19448372_19452318 chr3R_19448093_19448371 chr3R_19441993_19442044;chr3R_19452319_19452369 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA K alternative_acceptor RpS3A,I_chr4_87364_87465,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87533_87769 chr4_87549_87769 chr4_87770_87817;chr4_87466_87532 99.94 99.95 99.95 99.91 99.88 99.94 99.93 99.92 99.91 100.00 99.95 99.95 99.96 100.00 99.96 99.88 100.00 99.93 99.93 99.84 99.94 99.90 99.94 99.94 99.92 99.96 100.00 99.92 100.00 99.71 99.96 99.55 99.86 99.93 99.91 100.00 100.00 99.91 99.94 99.87 100.00 99.98 99.95 100.00 99.49 99.85 99.90 99.66 99.97 99.87 100.00 100.00 99.93 100.00 99.90 100.00 99.92 99.30 K intron_retention Arf51F,I_chr2R_11210733_11210953 chr2R + chr2R_11210218_11210953 chr2R_11210217_11210218;chr2R_11210953_11210954 chr2R_11209979_11210217;chr2R_11210954_11211053 57.75 55.56 57.75 48.42 58.70 59.68 65.43 42.42 58.47 64.44 52.00 75.73 58.33 56.45 60.24 55.22 59.32 69.01 56.92 56.20 58.90 55.56 67.95 69.70 70.59 67.11 71.79 55.32 57.14 59.42 58.46 52.38 40.91 56.52 56.25 78.38 79.31 71.43 65.67 40.68 41.89 56.69 53.85 59.65 56.63 37.17 56.45 37.07 58.93 65.38 55.56 65.31 52.08 50.88 54.55 67.86 59.02 33.92 K alternative_acceptor rho-7,noncoding_6143 chr2R - chr2R_7876063_7876127 chr2R_7876069_7876127 chr2R_7876128_7876254;chr2R_7876008_7876062 100.00 94.12 93.75 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 94.74 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 K intron_retention CG10737 chr2R + chr2R_15064249_15064445 chr2R_15064248_15064249;chr2R_15064445_15064446 chr2R_15064096_15064248;chr2R_15064446_15064451 24.24 NA NA 19.05 NA NA NA 42.86 37.50 NA NA 24.24 0.00 NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 25.00 NA 28.57 NA NA NA 12.50 NA NA 25.00 NA NA NA NA NA NA NA NA NA N jcn_only_AA CG14253 chr3R + chr3R_22807474_22809684 chr3R_22807474_22807525 chr3R_22807374_22807473;chr3R_22809685_22809939 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG17549,R_chr2L_19388305_19388473,RI_chr2L_19388570_19389427,I_chr2L_19388570_19389922 chr2L - chr2L_19388570_19389427;chr2L_19388570_19389926;chr2L_19388570_19389935 chr2L_19388570_19389764 chr2L_19388474_19388569;chr2L_19389936_19390022 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N jcn_only_AA Tsp42Ed chr2R - chr2R_2897806_2897936 chr2R_2897868_2897936 chr2R_2897937_2898098;chr2R_2897608_2897805 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,RI_chr2R_20289332_20289739,I_chr2R_20289332_20289846,I_chr2R_20289332_20290093 chr2R - chr2R_20289332_20289739;chr2R_20289332_20290093;chr2R_20289332_20289846 chr2R_20289332_20290083 chr2R_20289232_20289331;chr2R_20290094_20290193 90.00 NA NA 63.89 NA 95.83 90.24 82.93 79.41 NA NA 87.50 86.67 81.58 73.33 90.62 84.21 83.33 73.17 91.49 91.67 74.19 93.75 85.71 NA 88.24 100.00 95.65 NA 94.44 93.02 NA 86.96 90.00 96.55 100.00 95.45 NA NA 85.71 NA 83.33 85.19 80.95 NA 90.32 90.48 93.88 92.73 NA 94.87 93.75 86.36 NA 84.38 NA NA 90.32 K intron_retention PNUTS,I_chr2L_870553_871317 chr2L + chr2L_871275_871340 chr2L_871274_871275;chr2L_871340_871341 chr2L_871122_871274;chr2L_871341_871417 4.44 NA 0.00 0.00 NA NA 15.38 3.23 4.44 NA NA 0.00 11.11 8.70 NA 15.38 NA NA 8.70 0.00 NA NA 3.57 0.00 25.00 NA 28.57 6.67 14.29 6.67 NA NA NA 16.13 NA 26.67 0.00 0.00 0.00 7.69 NA 3.85 NA 0.00 NA NA NA NA 7.14 0.00 6.45 0.00 NA NA NA NA 0.00 NA K intron_retention l(2)k14505,I_chr2L_21261891_21262012,I_chr2L_21275807_21277205 chr2L + chr2L_21261958_21262012 chr2L_21261957_21261958;chr2L_21262012_21262013 chr2L_21261777_21261957;chr2L_21262013_21262112 0.68 0.00 2.44 3.36 0.00 0.00 2.80 1.82 0.00 0.00 3.51 1.56 0.00 0.00 1.22 0.00 4.35 0.00 0.00 1.40 0.00 0.00 0.91 0.00 5.88 1.11 8.74 10.53 1.47 4.44 0.00 0.00 1.43 2.52 0.00 0.00 0.00 1.59 0.00 0.00 10.00 1.71 0.00 0.00 0.00 0.86 0.00 0.00 1.64 0.00 0.83 0.00 3.30 2.35 0.00 0.95 0.68 0.85 K intron_retention MRP,F_chr2L_12727117_12736035 chr2L + chr2L_12738748_12738806 chr2L_12738747_12738748;chr2L_12738806_12738807 chr2L_12738241_12738747;chr2L_12738807_12739188 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.37 0.00 1.08 1.77 0.58 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 K intron_retention gish chr3R + chr3R_12106734_12107802 chr3R_12106733_12106734;chr3R_12107802_12107803 chr3R_12106723_12106733;chr3R_12107803_12107810 45.80 NA NA NA NA NA NA NA 69.23 NA NA NA NA NA NA 45.45 NA NA NA 46.15 NA 40.00 NA 63.64 NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA 36.36 NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG14438 chrX + chrX_6654244_6654309 chrX_6654243_6654244;chrX_6654309_6654310 chrX_6654025_6654243;chrX_6654310_6654379 0.00 0.00 0.00 0.00 0.00 0.00 9.52 2.27 5.48 0.00 NA 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 2.44 0.00 0.00 3.85 10.81 19.05 12.12 0.00 0.00 NA 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K intron_retention Dhc64C chr3L - chr3L_4812256_4813327 chr3L_4812255_4812256;chr3L_4813327_4813328 chr3L_4812189_4812255;chr3L_4813328_4815436 3.77 0.00 NA 21.05 NA 0.00 15.38 0.00 5.88 NA 12.50 12.90 NA NA 0.00 8.00 NA NA 0.00 0.00 NA 0.00 5.66 6.45 9.09 NA 6.45 18.52 NA 10.53 0.00 NA 3.85 10.81 0.00 3.45 0.00 0.00 11.54 21.21 NA 3.77 NA 0.00 0.00 0.00 0.00 8.82 9.30 9.52 11.54 0.00 0.00 NA 0.00 0.00 0.00 6.25 K jcn_only_AA f-cup,EI_chr3R_9524613_9524789 chr3R - chr3R_9524004_9524789 chr3R_9524582_9524789 chr3R_9524790_9524889 0.00 0.00 2.50 0.00 0.00 0.00 0.00 2.27 0.00 NA 0.00 0.00 0.00 3.12 2.33 0.00 4.00 8.00 3.33 3.08 0.00 0.00 3.03 0.00 0.00 0.00 3.33 0.00 2.86 3.23 4.17 5.00 2.56 2.04 6.90 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 10.00 3.12 0.00 0.00 2.27 0.00 0.00 4.55 0.00 NA 0.00 4.35 0.00 0.00 K jcn_only_AA Uch,CG10880 chr2L - chr2L_2213549_2213615 chr2L_2213558_2213615 chr2L_2213616_2213684;chr2L_2213489_2213548 100.00 100.00 100.00 100.00 100.00 99.61 99.66 100.00 100.00 100.00 100.00 99.79 98.97 100.00 99.71 100.00 99.51 100.00 100.00 100.00 100.00 100.00 100.00 99.72 100.00 100.00 100.00 99.13 99.57 100.00 99.69 99.52 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.68 100.00 100.00 100.00 99.38 100.00 100.00 99.64 99.53 99.53 100.00 99.72 99.61 99.78 100.00 K alternative_donor mys,I_chrX_7958795_7961094 chrX + chrX_7955904_7957872;chrX_7955914_7957872;chrX_7955759_7957872;chrX_7956114_7957872;chrX_7955901_7957872;chrX_7956125_7957872;chrX_7955967_7957872 chrX_7955908_7957872 chrX_7957873_7958492;chrX_7955741_7955758 1.02 1.49 0.76 0.53 0.00 0.91 1.46 1.20 0.82 1.22 0.00 0.38 0.00 1.42 0.65 0.57 0.00 0.79 0.64 0.57 0.81 0.55 2.17 2.56 2.04 1.23 1.79 2.70 0.81 2.13 0.44 0.00 0.57 0.42 1.69 1.85 1.48 1.72 1.18 1.05 1.92 1.01 1.03 1.02 1.10 1.03 2.08 0.47 1.15 3.03 2.00 1.69 0.89 0.00 0.56 0.00 2.53 0.77 K jcn_only_AD CG14005,I_chr2L_5801609_5801677 chr2L - chr2L_5801609_5801677 chr2L_5801609_5801671 chr2L_5801509_5801608;chr2L_5801678_5801777 95.00 NA NA NA NA 86.96 NA 91.67 100.00 NA NA 100.00 NA NA NA 95.45 NA NA NA 100.00 NA NA 93.33 90.32 NA NA 95.45 NA NA 89.66 96.30 95.00 96.77 94.59 92.59 88.89 95.00 92.59 95.65 97.30 NA 90.00 NA 100.00 86.96 90.91 NA 84.38 85.71 93.10 88.00 100.00 100.00 95.00 95.00 95.83 95.45 90.00 K intron_retention CG9836,I_chr3R_4654041_4664113,I_chr3R_4749124_4756437 chr3R - chr3R_4649524_4649706 chr3R_4649523_4649524;chr3R_4649706_4649707 chr3R_4649075_4649523;chr3R_4649707_4649871 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention sli,RI_chr2R_11794739_11809143 chr2R - chr2R_11761183_11761794 chr2R_11761182_11761183;chr2R_11761794_11761795 chr2R_11761040_11761182;chr2R_11761795_11761827 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA 5.88 NA 0.00 NA NA NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA K intron_retention RhoGAP5A,C_chrX_5514320_5515557 chrX - chrX_5511090_5511153 chrX_5511089_5511090;chrX_5511153_5511154 chrX_5510684_5511089;chrX_5511154_5511259 0.00 7.32 0.00 3.33 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 5.36 0.00 15.38 1.39 3.57 4.44 0.00 1.75 2.56 26.67 0.00 0.00 0.00 0.00 0.00 0.00 2.17 2.00 3.64 3.49 3.23 0.00 3.08 0.00 0.00 0.00 2.70 3.12 2.56 0.00 6.15 3.77 0.00 3.03 4.35 0.00 0.00 3.75 0.00 K intron_retention CG11357,C_chr3L_4563905_4578759 chr3L + chr3L_4551941_4552104 chr3L_4551940_4551941;chr3L_4552104_4552105 chr3L_4551002_4551940;chr3L_4552105_4553455 0.00 0.00 0.00 1.06 0.00 0.00 0.23 0.43 0.23 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette cora,I_chr2R_15125277_15130573,I_chr2R_15125940_15130208,I_chr2R_15129291_15129988 chr2R + chr2R_15125940_15130208 chr2R_15125940_15126293;chr2R_15128442_15128462;chr2R_15129291_15129678;chr2R_15129901_15129994;chr2R_15130091_15130208 chr2R_15126294_15128441;chr2R_15128463_15129290;chr2R_15129679_15129900;chr2R_15129995_15130090 chr2R_15125887_15125939;chr2R_15130209_15130308 100.00 100.00 100.00 99.80 100.00 100.00 100.00 100.00 100.00 99.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG10737 chr2R + chr2R_15062754_15063752;chr2R_15062754_15063770 chr2R_15062754_15063692 chr2R_15062592_15062753;chr2R_15063771_15063852 94.12 91.92 91.51 89.66 92.31 97.70 87.00 96.82 92.52 97.44 95.24 93.53 95.74 95.40 96.91 86.11 96.88 94.69 96.94 92.20 86.79 84.69 94.92 96.15 96.88 94.39 96.00 90.00 98.28 93.98 94.96 98.33 67.77 87.92 90.79 96.67 94.26 92.55 95.10 93.62 98.39 91.63 86.42 97.30 85.71 98.36 97.06 90.28 91.57 94.51 93.97 91.78 91.95 94.12 95.69 89.29 95.00 93.04 K intron_retention RI_chr3R_18950918_18950979,CG31457 chr3R - chr3R_18952768_18952826 chr3R_18952767_18952768;chr3R_18952826_18952827 chr3R_18952226_18952767;chr3R_18952827_18953680 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 2.38 0.00 0.00 NA 0.00 NA 0.00 8.33 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.85 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention Caf1,mRpS10 chr3R + chr3R_11052249_11052358 chr3R_11052248_11052249;chr3R_11052358_11052359 chr3R_11051691_11052248;chr3R_11052359_11053336 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14778,CG14780 chrX + chrX_1367204_1367268 chrX_1367203_1367204;chrX_1367268_1367269 chrX_1366909_1367203;chrX_1367269_1367730 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA 5.88 NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA 6.67 NA NA NA NA NA 0.00 0.00 5.26 0.00 NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA K jcn_only_AD Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4833234_4834454;chrX_4833203_4834454;chrX_4833308_4834454;chrX_4833338_4834454 chrX_4833364_4834454 chrX_4834455_4834880;chrX_4833197_4833202 7.07 NA 9.09 8.11 14.29 NA 8.33 7.32 6.82 4.17 NA 5.56 3.85 11.76 NA 12.50 6.25 NA 12.50 1.96 NA 4.55 NA NA NA NA NA NA NA 3.23 8.33 NA 6.78 9.09 NA NA NA NA NA NA NA 2.70 9.09 NA NA NA NA 3.23 11.11 NA NA NA NA NA 4.76 NA NA NA K intron_retention Itp-r83A chr3R + chr3R_1356653_1356709 chr3R_1356652_1356653;chr3R_1356709_1356710 chr3R_1356497_1356652;chr3R_1356710_1356863 0.00 0.00 0.00 3.33 0.00 NA 3.70 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 5.56 0.00 4.00 0.00 0.00 0.00 15.38 0.00 5.00 17.65 5.26 NA 11.11 0.00 5.56 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 10.53 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention CG1637 chrX - chrX_10767513_10767577 chrX_10767512_10767513;chrX_10767577_10767578 chrX_10767169_10767512;chrX_10767578_10767741 6.67 NA NA 11.11 NA NA NA NA 9.09 NA NA 10.53 NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA 5.88 NA NA NA NA NA NA 0.00 NA NA NA 14.29 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD hppy,I_chr2R_15066378_15066915,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15066304_15067003;chr2R_15066378_15067003;chr2R_15066243_15067003 chr2R_15066358_15067003 chr2R_15067004_15067015;chr2R_15066237_15066242 3.30 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA 0.00 3.57 NA NA NA NA 13.04 6.90 NA NA NA NA NA NA NA NA 9.52 NA 4.55 NA NA NA 3.03 NA NA NA 2.86 12.50 NA 6.45 NA NA NA 14.29 NA NA NA N intron_retention nimC1,I_chr2L_13975880_13975977 chr2L - chr2L_13976221_13976476 chr2L_13976220_13976221;chr2L_13976476_13976477 chr2L_13971741_13976220;chr2L_13976477_13976753 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 30.43 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention Psn,RI_chr3L_20430213_20430358 chr3L + chr3L_20427346_20427647 chr3L_20427345_20427346;chr3L_20427647_20427648 chr3L_20427187_20427345;chr3L_20427648_20427812 78.72 83.12 74.07 73.44 75.68 68.00 87.27 78.18 76.19 70.97 78.12 81.58 78.79 81.58 78.57 94.44 77.14 94.12 86.21 80.56 88.24 86.27 77.55 81.71 73.58 78.05 80.56 81.25 92.68 86.67 78.95 81.63 83.72 78.12 82.50 89.36 78.08 71.67 78.72 68.09 80.95 72.62 78.12 82.09 78.48 75.36 75.34 80.00 81.97 78.18 75.90 78.12 85.11 81.36 85.71 75.00 74.32 78.57 K intron_retention Syx13,RI_chr3L_13037959_13038017,CG11279 chr3L + chr3L_13038696_13039316 chr3L_13038695_13038696;chr3L_13039316_13039317 chr3L_13038018_13038695;chr3L_13039317_13039993 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL15 chr3LHet + chr3LHet_2397992_2398049 chr3LHet_2397991_2397992;chr3LHet_2398049_2398050 chr3LHet_2397802_2397991;chr3LHet_2398050_2398052 50.00 43.75 51.28 45.61 50.00 52.00 22.15 50.00 54.46 54.55 53.85 46.94 44.90 46.34 61.11 55.88 45.16 30.00 42.86 56.00 29.41 21.33 65.31 52.50 39.39 30.43 78.57 87.50 53.33 52.00 48.08 41.94 54.55 48.53 50.00 74.42 65.22 50.00 58.82 55.10 41.18 46.67 50.00 34.21 50.00 45.28 48.72 48.28 54.84 55.32 40.74 53.57 79.17 54.29 50.00 43.18 57.89 62.86 K alternative_acceptor CG17683,I_chr2R_18774_18869,I_chr2R_19002_19060 chr2R + chr2R_19002_19064 chr2R_19002_19060 chr2R_18902_19001;chr2R_19065_19124 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 97.56 100.00 100.00 100.00 100.00 100.00 94.12 95.83 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 95.00 100.00 100.00 94.12 100.00 92.86 100.00 96.55 100.00 100.00 96.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG9776,CG9772 chr3R - chr3R_161636_161730 chr3R_161668_161730 chr3R_161731_161797;chr3R_161571_161635 99.55 98.26 99.39 100.00 100.00 99.17 99.54 99.07 99.69 100.00 100.00 99.17 100.00 100.00 100.00 99.32 100.00 100.00 100.00 99.38 100.00 100.00 99.52 99.54 100.00 100.00 98.81 100.00 100.00 99.08 98.91 100.00 100.00 99.50 98.88 98.92 98.75 98.82 99.60 99.11 100.00 99.65 100.00 99.35 99.20 98.09 99.50 98.96 99.55 100.00 99.55 100.00 100.00 99.24 99.40 98.41 100.00 100.00 K intron_retention dwg,RI_chrX_2622297_2622430,RI_chrX_2622435_2622577,RI_chrX_2627170_2627263 chrX + chrX_2622968_2623029 chrX_2622967_2622968;chrX_2623029_2623030 chrX_2622578_2622967;chrX_2623030_2623121 0.00 0.00 0.00 4.76 NA NA NA 0.00 0.00 0.00 0.00 2.94 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 6.25 0.00 10.71 18.18 3.45 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 3.77 2.50 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 K intron_retention Nup98 chr3R - chr3R_19602830_19603159 chr3R_19602829_19602830;chr3R_19603159_19603160 chr3R_19602654_19602829;chr3R_19603160_19603342 6.38 0.00 5.77 7.87 5.26 7.69 8.82 10.11 4.85 7.69 8.57 6.02 16.67 1.89 2.00 8.96 4.88 5.00 11.90 9.52 7.69 2.13 2.53 3.03 11.76 8.70 5.80 7.69 24.14 6.25 5.77 7.14 12.50 6.33 0.00 6.38 3.85 0.00 3.03 4.84 8.00 7.41 4.65 8.89 0.00 5.13 8.33 4.17 5.13 16.36 8.00 7.14 18.75 0.00 5.00 7.69 9.76 6.45 K jcn_only_AA plexA,I_chr4_1035140_1035208,I_chr4_1035153_1035403,RI_chr4_1036247_1047588,RI_chr4_1040642_1047395,RF_chr4_1044307_1047399 chr4 - chr4_1035140_1035208 chr4_1035153_1035208 chr4_1035209_1035277;chr4_1035081_1035139 99.14 98.92 100.00 99.41 100.00 100.00 96.72 98.96 97.46 96.67 95.89 97.21 100.00 100.00 95.50 99.42 100.00 100.00 98.46 99.47 100.00 100.00 100.00 100.00 100.00 98.61 99.19 100.00 100.00 96.61 98.51 97.62 100.00 97.70 96.67 100.00 98.65 100.00 97.56 96.00 100.00 98.94 96.88 98.75 100.00 100.00 100.00 95.00 94.71 97.32 98.25 100.00 100.00 98.48 99.14 98.99 97.12 100.00 K mutually_exclusive Pkn,EI_chr2R_5143544_5143611,CI_chr2R_5143544_5146344,I_chr2R_5171635_5172166 chr2R - chr2R_5143215_5144914,chr2R_5145566_5146344 chr2R_5143215_5143333,chr2R_5143544_5146344 chr2R_5144915_5145565 chr2R_5143334_5143543 chr2R_5143018_5143214;chr2R_5146345_5146444 0.00 NA 0.00 0.00 NA NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA 0.00 14.29 0.00 0.00 NA 0.00 0.00 16.67 0.00 NA NA 0.00 0.00 0.00 0.00 12.50 0.00 0.00 50.00 NA 0.00 NA 33.33 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 K intron_retention Tsp42Ee,RI_chr2R_2904593_2904783 chr2R + chr2R_2904593_2904783 chr2R_2904592_2904593;chr2R_2904783_2904784 chr2R_2904518_2904592;chr2R_2904784_2904880 99.93 99.93 99.93 100.00 99.93 100.00 100.00 99.96 100.00 99.87 99.86 99.96 99.92 99.92 99.93 99.95 100.00 99.92 100.00 99.83 99.93 99.85 99.95 99.95 100.00 100.00 99.94 99.74 100.00 99.91 99.85 99.75 99.65 99.86 99.56 100.00 99.95 99.93 99.94 99.58 99.90 99.96 100.00 99.95 99.79 99.93 99.93 99.89 99.85 99.84 99.93 99.92 100.00 99.89 99.94 99.93 100.00 99.94 K alternative_donor CG10737 chr2R + chr2R_15060394_15060936 chr2R_15060427_15060936 chr2R_15060937_15061148;chr2R_15060217_15060393 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.40 1.18 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.48 0.84 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.37 0.00 0.78 0.62 0.37 0.00 0.42 0.00 0.00 0.42 0.00 0.00 0.00 0.62 0.87 1.03 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 K cassette NFAT,RI_chrX_13543535_13546911,I_chrX_13544101_13544542 chrX + chrX_13544101_13548816 chrX_13544101_13546911;chrX_13547539_13548816 chrX_13546912_13547538 chrX_13544001_13544100;chrX_13548817_13549237 45.83 45.83 45.00 56.14 47.06 38.89 41.46 48.48 44.79 43.40 16.28 50.60 25.58 45.16 41.18 55.36 45.16 31.71 33.33 25.49 28.57 61.90 56.67 51.11 44.12 40.62 65.00 50.00 72.73 53.85 35.14 43.48 58.62 40.91 59.26 36.67 42.17 48.78 48.61 58.00 66.67 38.30 41.38 50.91 59.09 55.56 42.86 58.33 37.04 50.00 45.65 43.75 54.55 50.00 44.00 47.83 47.06 55.56 K alternative_donor Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15755345_15755409;chrX_15754356_15755409 chrX_15754284_15755409 chrX_15755410_15755509;chrX_15754256_15754283 90.77 92.77 90.36 92.00 90.77 91.43 92.55 90.18 88.79 89.19 90.20 80.69 75.64 85.15 90.28 92.71 90.67 90.00 90.20 90.85 92.73 94.68 95.10 81.54 91.80 86.57 91.95 89.19 89.36 87.72 91.82 91.43 83.67 90.00 91.18 82.69 91.67 94.92 91.38 84.21 92.68 87.67 83.33 93.40 88.00 88.57 93.65 86.15 89.01 89.19 91.30 92.55 94.59 92.59 90.91 94.74 96.05 91.67 K jcn_only_AA CG10277,I_chr3R_2208983_2210253,I_chr3R_2211939_2212057 chr3R + chr3R_2208983_2210702 chr3R_2208983_2210253 chr3R_2208883_2208982;chr3R_2210703_2210980 0.00 5.26 0.00 0.00 0.00 0.00 0.59 0.88 0.00 0.85 0.00 0.00 2.22 0.00 0.00 0.00 4.76 0.00 0.96 0.23 0.00 0.00 0.00 0.70 0.00 0.00 0.58 2.25 0.60 0.64 2.29 0.00 0.00 0.76 0.00 0.00 0.00 NA 0.00 0.87 0.64 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 K intron_retention CG8745 chr3L - chr3L_13858536_13859702 chr3L_13858535_13858536;chr3L_13859702_13859703 chr3L_13858417_13858535;chr3L_13859703_13860072 46.15 NA NA NA NA NA NA 54.55 30.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 28.57 NA NA NA 77.78 46.15 NA NA NA NA NA NA NA 12.50 46.15 K intron_retention noncoding_7780,CG30120,CG5189 chr2R + chr2R_14334211_14334268 chr2R_14334210_14334211;chr2R_14334268_14334269 chr2R_14334117_14334210;chr2R_14334269_14334314 15.07 15.38 6.45 37.50 5.00 3.33 33.33 8.70 15.38 7.69 25.00 12.82 NA NA 6.67 NA 0.00 0.00 22.22 15.38 0.00 16.67 21.88 14.29 15.00 21.43 NA NA 35.29 NA 19.35 14.29 35.71 15.38 14.29 30.00 21.74 9.68 15.15 41.67 50.00 11.90 22.22 NA 16.00 15.56 11.76 12.50 13.16 16.67 25.00 21.43 7.69 5.71 11.54 9.09 10.81 4.00 K jcn_only_AA Tao-1,I_chrX_19470426_19470727 chrX - chrX_19470426_19470727 chrX_19470429_19470727 chrX_19470728_19470827;chrX_19470326_19470425 98.97 98.11 99.43 97.58 98.40 100.00 98.37 98.92 99.01 98.64 98.15 99.16 99.18 99.02 99.31 98.30 100.00 99.34 99.25 98.94 99.27 99.35 98.97 99.54 98.28 98.00 98.68 100.00 100.00 99.45 100.00 98.65 99.33 100.00 99.28 98.68 98.83 98.23 98.59 99.20 97.33 100.00 100.00 97.91 98.91 98.53 98.29 98.88 99.23 100.00 98.39 97.81 97.87 98.95 99.39 100.00 99.00 98.18 K intron_retention CG9253 chr2L + chr2L_21143504_21143563 chr2L_21143503_21143504;chr2L_21143563_21143564 chr2L_21143322_21143503;chr2L_21143564_21143822 0.00 0.00 0.00 3.47 0.00 0.00 0.70 1.05 2.11 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.92 0.00 0.61 0.00 0.00 1.05 0.00 0.00 0.00 2.80 1.95 0.00 0.00 0.45 0.00 0.00 1.05 0.00 1.50 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.32 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 K intron_retention CG12384,I_chr2R_7245925_7246462,RI_chr2R_7245930_7246231,RI_chr2R_7245930_7246259 chr2R - chr2R_7245777_7245840 chr2R_7245776_7245777;chr2R_7245840_7245841 chr2R_7245312_7245776;chr2R_7245841_7245924 0.00 0.00 0.00 1.17 0.00 0.00 0.00 0.34 0.30 0.00 0.00 0.62 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 1.05 0.00 1.34 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.57 0.00 0.95 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention aPKC,I_chr2R_10833552_10833654,RI_chr2R_10849347_10850391 chr2R - chr2R_10832733_10833654 chr2R_10832732_10832733;chr2R_10833654_10833655 chr2R_10832714_10832732;chr2R_10833655_10833754 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 NA NA 93.33 91.67 100.00 NA 100.00 NA NA NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 K intron_retention Hrb87F chr3R - chr3R_9484020_9484183 chr3R_9484019_9484020;chr3R_9484183_9484184 chr3R_9483046_9484019;chr3R_9484184_9484235 0.97 0.44 0.61 8.98 0.53 1.55 2.17 3.76 0.68 0.57 0.00 1.99 2.35 1.81 2.71 3.19 2.92 1.23 1.47 0.98 0.00 1.25 1.04 1.11 0.82 1.92 1.13 1.55 0.33 0.45 2.11 0.74 0.77 2.15 0.00 1.52 0.68 0.48 0.97 0.76 0.56 1.47 0.00 0.66 0.31 0.55 0.48 0.42 1.39 0.94 0.98 1.32 1.28 0.71 2.05 0.82 0.83 0.53 K intron_retention CG8051,I_chrX_19198128_19201351 chrX - chrX_19198128_19199326 chrX_19198127_19198128;chrX_19199326_19199327 chrX_19198028_19198127;chrX_19199327_19199358 13.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA 16.67 NA 15.38 NA NA NA NA NA NA NA K alternative_acceptor CG7861 chr2R + chr2R_1931884_1931956 chr2R_1931884_1931938 chr2R_1931601_1931883;chr2R_1931957_1932469 100.00 100.00 100.00 97.44 100.00 100.00 97.06 100.00 100.00 100.00 100.00 97.62 95.65 100.00 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 97.06 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.90 100.00 100.00 97.87 96.15 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention cwo,noncoding_15870,chr3R_6215619_6216520.0,chr3R_6216827_6217291.0,chr3R_6217556_6219555.0,chr3R_6219984_6221958.0 chr3R + chr3R_6215160_6223084 chr3R_6215159_6215160;chr3R_6223084_6223085 chr3R_6214846_6215159;chr3R_6223085_6223406 50.00 NA NA NA NA NA 21.43 50.00 44.44 NA NA 47.37 NA NA NA 53.33 NA NA NA 46.15 NA 51.72 63.16 68.75 50.00 NA 50.00 NA 50.00 61.11 NA NA 63.16 70.00 53.33 40.00 47.06 53.33 47.06 65.38 69.23 42.11 NA 41.18 NA 33.33 63.64 47.83 55.56 72.73 70.59 NA 54.55 NA 46.15 NA NA 50.00 K alternative_acceptor ana2,MrgBP,CG8258 chr2R - chr2R_4786818_4786871 chr2R_4786821_4786871 chr2R_4786872_4787717;chr2R_4786228_4786817 25.00 30.43 20.00 17.39 30.77 16.67 29.17 24.24 28.57 NA 23.08 31.03 22.22 27.78 22.22 25.93 5.56 25.00 20.00 22.73 30.77 25.00 22.73 29.63 26.67 13.33 16.67 33.33 NA 29.41 7.69 21.05 22.22 20.83 26.67 23.53 24.24 50.00 21.74 33.33 30.00 22.86 30.77 18.75 40.00 30.00 25.93 25.00 26.32 23.08 33.33 36.36 21.74 26.92 35.00 27.27 28.57 23.81 K alternative_donor Cctgamma chr3R + chr3R_12473409_12473557;chr3R_12473318_12473557;chr3R_12473479_12473557;chr3R_12473420_12473557;chr3R_12473424_12473557 chr3R_12473464_12473557 chr3R_12473558_12473651;chr3R_12473311_12473317 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 4.76 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Pros35,I_chr2L_10222136_10222201,I_chr2L_10222136_10222259,CG4908 chr2L + chr2L_10222136_10222201 chr2L_10222144_10222201 chr2L_10222202_10222270;chr2L_10222075_10222135 99.50 99.64 99.31 99.43 99.30 99.66 99.69 99.31 99.80 98.97 100.00 99.55 99.71 99.15 99.32 99.42 99.72 99.42 98.60 99.59 99.47 99.50 99.10 99.69 99.72 99.45 99.80 99.75 99.79 99.82 99.19 99.18 100.00 99.64 99.71 99.28 99.24 99.08 99.86 99.65 99.66 99.33 98.33 99.00 99.41 99.50 99.57 100.00 99.82 99.17 99.60 98.95 99.35 98.91 99.74 99.69 99.65 99.45 K alternative_acceptor tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563485_565232;chr3R_563461_565232 chr3R_563503_565232 chr3R_565233_565290;chr3R_563195_563460 80.00 85.00 88.24 97.44 73.68 64.71 63.64 86.67 86.89 76.92 62.50 90.48 85.00 81.82 85.00 80.00 87.50 84.21 80.00 86.67 83.33 84.21 63.16 66.67 81.82 85.71 NA 88.89 71.43 66.67 89.29 80.00 80.00 74.29 NA 72.73 85.71 71.43 78.57 85.71 75.00 82.61 78.57 85.71 72.73 66.67 NA 73.33 88.37 83.33 69.23 94.44 63.64 NA 96.43 77.78 75.00 75.00 K alternative_acceptor CG7185 chr3L - chr3L_8304813_8304873 chr3L_8304816_8304873 chr3L_8304874_8305173;chr3L_8304747_8304812 98.15 97.10 98.75 98.36 97.92 96.92 100.00 97.10 100.00 100.00 97.67 98.00 100.00 96.30 98.53 98.15 97.73 98.61 98.33 96.99 98.44 98.78 97.67 100.00 98.61 100.00 97.67 97.56 95.95 98.08 97.33 97.73 98.26 97.47 98.75 96.47 97.18 98.61 99.00 95.83 98.86 98.68 98.04 96.97 97.28 97.64 99.01 98.48 98.51 96.91 98.39 98.15 98.75 97.03 98.57 98.88 94.67 97.81 K intron_retention shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9754481_9755660 chr2R_9754480_9754481;chr2R_9755660_9755661 chr2R_9754381_9754480;chr2R_9755661_9755854 0.00 0.00 0.48 0.77 0.00 0.42 0.00 0.84 0.22 0.00 0.00 0.55 4.23 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.29 0.48 0.00 0.00 0.00 0.38 0.70 0.45 0.27 0.93 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.60 0.28 0.00 0.00 0.00 0.83 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD CG33936,CG33937,RI_chr3R_5183458_5183705 chr3R + chr3R_5183178_5183705;chr3R_5180806_5183705 chr3R_5182946_5183705 chr3R_5183706_5183805 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG7945,RI_chr3L_15515681_15516932,RI_chr3L_15516824_15516932 chr3L - chr3L_15515603_15516067 chr3L_15515603_15515659;chr3L_15515681_15516067 chr3L_15515660_15515680 chr3L_15515581_15515602;chr3L_15516068_15516564 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_acceptor unc-5,E_chr2R_11238100_11240757,I_chr2R_11252444_11252570 chr2R + chr2R_11246255_11247919 chr2R_11246255_11247482 chr2R_11246084_11246254;chr2R_11247920_11247973 3.45 5.56 4.55 6.90 0.00 8.33 9.09 0.00 3.85 0.00 0.00 4.35 NA NA 0.00 9.09 NA 66.67 0.00 5.26 0.00 2.60 1.96 0.00 0.00 6.67 0.00 9.09 8.70 3.45 3.85 NA 6.67 3.45 0.00 4.76 3.33 0.00 2.86 6.67 NA 4.65 NA 3.12 6.67 0.00 0.00 3.85 3.85 5.00 2.50 0.00 0.00 0.00 4.35 NA NA 5.26 K intron_retention CG32626 chrX - chrX_13725134_13725200 chrX_13725133_13725134;chrX_13725200_13725201 chrX_13724782_13725133;chrX_13725201_13725311 0.79 0.50 1.20 1.57 0.00 0.79 0.92 0.86 1.35 0.00 1.27 1.34 0.00 0.00 0.00 0.54 0.00 1.32 1.53 0.58 0.00 1.06 0.71 0.78 0.00 0.79 0.44 3.20 1.85 0.00 1.35 0.00 0.43 0.96 1.45 1.20 0.32 1.00 0.89 1.13 1.35 1.05 0.00 0.35 0.75 0.87 1.46 1.69 2.11 0.47 1.02 0.00 0.53 0.00 0.61 0.37 0.63 1.92 K intron_retention CG2747,noncoding_15264,RI_chr3R_3843183_3843929 chr3R - chr3R_3842728_3843929 chr3R_3842727_3842728;chr3R_3843929_3843930 chr3R_3842585_3842727;chr3R_3843930_3844029 0.00 0.00 0.00 3.70 0.00 0.00 1.64 0.00 1.19 3.03 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 1.92 0.00 2.86 0.00 0.00 0.00 0.00 0.00 2.38 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.06 K intron_retention CG30090,RI_chr2R_11577574_11577625 chr2R + chr2R_11577672_11577758 chr2R_11577671_11577672;chr2R_11577758_11577759 chr2R_11577626_11577671;chr2R_11577759_11577937 3.57 2.38 3.57 12.20 0.00 0.00 6.49 6.06 4.17 NA 0.00 5.56 5.08 6.82 0.00 10.00 0.00 4.00 8.89 1.44 0.00 7.89 10.53 0.00 0.00 0.00 8.70 NA 5.26 3.70 3.92 7.41 0.00 2.44 0.00 6.67 0.00 0.00 4.65 4.76 0.00 2.27 0.00 0.00 0.00 6.25 3.92 0.00 5.10 0.00 0.00 0.00 4.17 0.00 3.77 5.00 2.44 6.67 K jcn_only_AA dnc,I_chrX_3150245_3150319,I_chrX_3150351_3152643 chrX + chrX_3150245_3152643;chrX_3150245_3150319 chrX_3150245_3152646 chrX_3150235_3150244;chrX_3152647_3152733 16.18 NA 12.12 20.00 NA 20.00 11.54 22.58 NA NA NA 19.23 25.00 NA 15.15 20.51 NA NA 7.69 22.73 NA NA NA NA NA NA NA NA NA NA 16.00 NA NA 10.26 NA NA NA NA NA NA NA 5.88 NA NA NA NA NA NA 16.36 NA NA NA NA NA 13.64 NA NA NA K alternative_donor rin,I_chr3R_9476825_9476895 chr3R + chr3R_9472923_9473104;chr3R_9473004_9473104 chr3R_9472992_9473104 chr3R_9473105_9473268;chr3R_9472709_9472922 0.00 0.00 0.00 0.00 2.13 1.54 0.61 0.44 0.38 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 2.17 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.70 0.00 NA 0.67 0.00 0.00 0.00 K jcn_only_AA RI_chrX_6482284_6482336,Pat1,I_chrX_6489999_6490050,APC7 chrX + chrX_6489505_6489571 chrX_6489505_6489568 chrX_6489347_6489504;chrX_6489572_6489993 99.09 100.00 98.94 98.64 97.80 98.81 98.39 99.40 99.05 98.28 97.73 98.77 98.23 98.88 98.36 100.00 98.82 99.18 98.97 100.00 98.10 99.23 100.00 96.43 98.51 99.02 99.22 98.95 100.00 97.80 99.09 100.00 100.00 97.89 98.57 100.00 100.00 100.00 99.09 100.00 100.00 99.49 98.78 100.00 95.06 100.00 100.00 100.00 99.44 100.00 95.97 98.51 100.00 100.00 97.44 100.00 100.00 98.26 K intron_retention Pax,RI_chr2L_19404683_19426205,RI_chr2L_19404823_19409403 chr2L - chr2L_19410414_19410479 chr2L_19410413_19410414;chr2L_19410479_19410480 chr2L_19410248_19410413;chr2L_19410480_19410643 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.90 1.52 0.65 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG17683,I_chr2R_18774_18869 chr2R + chr2R_18630_18692 chr2R_18630_18680 chr2R_18552_18629;chr2R_18693_18747 96.88 NA NA 92.86 NA NA 100.00 88.89 100.00 NA NA 100.00 NA NA NA 91.67 NA NA 100.00 91.67 NA NA 91.67 NA NA NA 100.00 NA NA NA 91.67 NA NA 93.75 80.00 NA NA NA NA 100.00 NA 100.00 NA 100.00 NA NA 87.50 NA 93.33 100.00 88.89 NA NA NA NA 100.00 100.00 NA N jcn_only_AA CG31431 chr3R + chr3R_17697863_17697938;chr3R_17697863_17697989 chr3R_17697863_17698131 chr3R_17697704_17697862;chr3R_17698132_17698247 100.00 100.00 100.00 100.00 100.00 100.00 69.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.79 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_150069_150307;chr4_150069_150180;chr4_150069_150378;chr4_150069_150353;chr4_150069_150295 chr4_150069_150205 chr4_149969_150068;chr4_150379_150379 4.71 NA NA 7.02 6.67 4.76 7.32 2.47 6.52 NA NA 4.17 6.67 14.81 4.17 6.67 4.65 0.00 0.00 7.41 NA NA NA NA NA 3.85 NA NA NA NA 5.13 NA NA 3.90 NA NA NA NA NA NA NA 3.51 5.00 NA NA NA NA NA 1.37 NA NA NA NA NA 2.70 NA NA NA K intron_retention RpL7A,I_chrX_6426455_6427156,I_chrX_6426579_6427002 chrX - chrX_6426455_6426522 chrX_6426454_6426455;chrX_6426522_6426523 chrX_6426355_6426454;chrX_6426523_6426578 0.00 0.00 0.00 0.04 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.20 0.45 0.00 0.00 0.07 0.00 0.00 0.07 0.00 0.04 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.04 0.05 0.03 0.00 0.00 0.05 0.00 0.07 0.11 0.00 K jcn_only_AA wun,I_chr2R_5291118_5291211,I_chr2R_5297151_5300729,I_chr2R_5297159_5300813 chr2R - chr2R_5290341_5291211 chr2R_5291118_5291211 chr2R_5291212_5291311;chr2R_5290161_5290340 1.29 1.69 0.00 1.96 0.00 0.00 10.00 0.00 0.00 1.75 14.29 0.00 0.00 0.00 0.00 0.00 3.03 12.00 3.12 1.79 4.35 7.59 0.86 1.09 1.08 NA 1.20 2.33 2.86 0.00 5.56 2.94 1.89 1.72 1.18 11.90 0.85 0.00 1.35 0.00 1.92 0.00 3.57 1.30 1.27 0.00 3.19 2.56 3.45 1.28 3.19 0.00 0.00 1.27 2.13 1.35 0.00 0.00 K alternative_donor Eip78C,I_chr3L_21255841_21256095 chr3L + chr3L_21233904_21256095 chr3L_21255841_21256095 chr3L_21256096_21256195;chr3L_21233887_21233903 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 20.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA K intron_retention CG13760 chrX - chrX_2478969_2479030 chrX_2478968_2478969;chrX_2479030_2479031 chrX_2478700_2478968;chrX_2479031_2479344 0.00 4.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 3.85 2.30 0.00 17.65 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 2.78 0.00 0.00 0.00 2.25 2.13 3.57 3.12 2.94 0.00 0.00 0.00 3.33 2.08 0.00 7.14 2.27 0.00 0.00 0.00 0.00 0.00 0.00 3.92 0.00 0.00 K intron_retention I_chr2L_8029734_8029787,Cka,CG7429 chr2L + chr2L_8036299_8036357 chr2L_8036298_8036299;chr2L_8036357_8036358 chr2L_8035821_8036298;chr2L_8036358_8036576 0.00 0.00 0.00 1.27 0.00 0.00 2.33 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 1.82 0.00 0.00 0.00 1.68 1.92 2.59 1.41 0.00 0.00 0.00 2.33 0.00 0.00 1.61 0.00 0.00 0.78 0.00 1.85 0.00 3.06 1.67 0.00 2.75 4.76 1.68 0.00 0.00 0.00 1.72 0.00 0.00 3.06 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 1.45 K intron_retention Irbp chr3R + chr3R_7236841_7236963 chr3R_7236840_7236841;chr3R_7236963_7236964 chr3R_7236778_7236840;chr3R_7236964_7238112 100.00 97.06 100.00 100.00 95.45 100.00 100.00 97.30 98.44 96.67 96.88 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.44 100.00 100.00 96.88 98.31 100.00 100.00 100.00 100.00 97.14 100.00 97.83 96.97 100.00 98.28 100.00 100.00 98.78 98.04 100.00 100.00 98.21 100.00 100.00 100.00 100.00 97.96 98.39 98.18 97.30 100.00 97.87 100.00 97.73 95.95 97.44 K cassette Gpo-1,I_chr2R_11747621_11747699,EI_chr2R_11747445_11747699,I_chr2R_11749758_11750187,I_chr2R_11756325_11756380 chr2R - chr2R_11747445_11747699 chr2R_11747445_11747511;chr2R_11747625_11747699 chr2R_11747512_11747624 chr2R_11747345_11747444;chr2R_11747700_11747768 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.48 97.78 100.00 100.00 100.00 100.00 98.70 99.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.89 100.00 99.07 100.00 100.00 100.00 99.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CtBP chr3R + chr3R_8847365_8850545 chr3R_8847365_8850521 chr3R_8847142_8847364;chr3R_8850546_8850586 67.43 NA NA NA NA NA NA 90.00 75.00 NA NA 68.18 NA NA NA NA NA NA NA 63.64 NA 71.43 NA 54.55 NA NA NA NA 50.00 NA 88.89 NA 90.91 NA NA NA 35.71 NA NA 72.73 NA 64.29 NA 60.00 NA 90.00 NA 66.67 56.25 NA 75.00 NA NA NA NA NA NA 53.85 K intron_retention lark,noncoding_11093,REI_chr3L_7332718_7333975,RI_chr3L_7334219_7334452 chr3L + chr3L_7333871_7333975 chr3L_7333870_7333871;chr3L_7333975_7333976 chr3L_7333152_7333870;chr3L_7333976_7334075 6.12 4.81 10.87 9.30 9.30 12.50 0.00 18.52 7.00 6.12 13.04 6.98 0.00 0.00 6.45 0.00 10.26 12.77 8.16 9.00 6.25 7.78 4.38 5.30 4.44 10.42 5.00 9.76 7.89 6.02 7.14 4.88 5.07 5.38 4.82 2.90 4.29 4.35 4.88 6.78 3.70 7.59 7.32 9.68 5.86 4.46 4.88 8.77 8.70 2.38 7.04 7.02 4.40 3.23 8.51 3.73 0.00 4.79 K intron_retention Sap47,I_chr3R_11761076_11761674,I_chr3R_11761436_11761674,F_chr3R_11761635_11761698,E_chr3R_11761635_11761703 chr3R + chr3R_11761307_11761698 chr3R_11761306_11761307;chr3R_11761698_11761699 chr3R_11761299_11761306;chr3R_11761699_11761774 100.00 100.00 100.00 97.44 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 96.00 100.00 100.00 100.00 96.77 100.00 100.00 98.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 93.33 100.00 100.00 96.30 94.44 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 K intron_retention robo chr2R - chr2R_18587540_18587595 chr2R_18587539_18587540;chr2R_18587595_18587596 chr2R_18587307_18587539;chr2R_18587596_18587684 94.25 NA NA NA NA NA 100.00 NA 91.67 NA NA NA NA NA NA NA NA 92.86 NA NA NA 95.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CanB2,CG12825 chr2R + chr2R_3675038_3675104 chr2R_3675038_3675095 chr2R_3674969_3675037;chr2R_3675105_3675170 100.00 100.00 99.50 99.38 100.00 100.00 100.00 100.00 100.00 98.97 100.00 99.66 100.00 99.40 100.00 99.65 100.00 100.00 99.45 99.77 98.90 99.31 99.46 100.00 99.19 99.44 100.00 99.15 99.19 100.00 100.00 98.72 100.00 100.00 98.54 99.38 99.45 100.00 99.50 99.59 100.00 100.00 100.00 98.94 99.43 100.00 100.00 100.00 99.45 100.00 100.00 100.00 97.95 100.00 100.00 100.00 99.51 99.65 K mutually_exclusive CG11873,I_chr3R_24900749_24922953,GM04590 chr3R + chr3R_24888870_24900684,chr3R_24900749_24922953 chr3R_24888870_24889524,chr3R_24890335_24922953 chr3R_24900685_24900748 chr3R_24889525_24890334 chr3R_24888832_24888869;chr3R_24922954_24923053 100.00 100.00 96.97 100.00 100.00 100.00 98.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 97.96 97.06 100.00 97.44 98.55 100.00 100.00 98.15 100.00 100.00 100.00 97.73 96.55 96.00 98.48 100.00 100.00 100.00 98.48 100.00 100.00 100.00 100.00 100.00 98.41 100.00 98.46 100.00 98.31 100.00 96.77 100.00 99.01 100.00 100.00 97.73 100.00 100.00 90.00 100.00 100.00 100.00 96.43 K alternative_donor Ten-a chrX + chrX_12097912_12098171;chrX_12097945_12098171;chrX_12098018_12098171;chrX_12098030_12098171 chrX_12098012_12098171 chrX_12098172_12098306;chrX_12097907_12097911 0.00 NA 0.00 NA NA NA NA 0.00 25.00 NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA 20.00 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention Hel25E,I_chr2L_5540301_5540396 chr2L - chr2L_5540110_5540168 chr2L_5540109_5540110;chr2L_5540168_5540169 chr2L_5539707_5540109;chr2L_5540169_5540300 0.23 0.00 0.93 0.80 0.00 0.78 0.00 0.56 0.23 0.00 0.00 0.12 0.29 0.26 0.41 0.00 0.00 0.00 0.66 0.53 0.00 0.00 0.95 0.48 1.12 0.60 1.32 2.25 0.47 0.00 0.00 0.44 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.24 0.61 0.00 0.00 0.24 1.22 0.00 0.37 1.45 0.18 0.00 0.00 0.23 0.20 0.71 0.38 0.00 K alternative_donor CG8839,I_chr2R_8229288_8229488,I_chr2R_8229288_8231538 chr2R - chr2R_8229288_8231968;chr2R_8229288_8231964;chr2R_8229288_8231966 chr2R_8229288_8232025 chr2R_8229188_8229287;chr2R_8232026_8232112 87.31 89.09 87.18 88.94 88.89 89.41 86.26 92.16 88.62 77.78 91.51 89.52 85.00 88.24 88.67 86.62 87.96 87.60 91.61 86.55 88.17 89.66 86.21 89.86 86.44 89.58 84.78 85.07 81.94 86.67 90.53 86.76 85.29 87.31 80.00 86.67 79.37 86.36 87.18 90.79 81.82 88.72 84.55 79.45 85.37 88.04 84.44 81.13 87.80 90.00 83.64 86.44 89.09 93.33 91.52 90.38 87.32 80.00 K jcn_only_AA CG14767,RI_chr2R_4609761_4610761,RI_chr2R_4610372_4610761 chr2R - chr2R_4607538_4610761 chr2R_4609761_4610761 chr2R_4610762_4610861;chr2R_4607438_4607537 0.00 0.33 0.23 0.00 0.00 0.23 1.00 0.17 0.10 1.51 0.00 0.00 0.28 0.00 0.00 0.18 0.00 0.28 0.00 0.86 0.00 0.00 0.21 0.25 0.00 0.82 0.12 0.15 0.00 0.00 1.48 0.00 0.00 0.33 0.24 0.00 0.10 0.59 0.21 0.24 0.00 0.12 0.00 0.00 0.00 0.38 0.00 0.77 0.14 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 K intron_retention CG7011 chr3L - chr3L_15154200_15154264 chr3L_15154199_15154200;chr3L_15154264_15154265 chr3L_15153969_15154199;chr3L_15154265_15154472 7.14 3.92 1.82 8.41 5.56 4.76 9.43 9.64 5.00 8.33 11.90 7.89 5.00 6.25 3.03 15.91 7.14 0.00 10.42 7.53 9.09 14.58 5.13 0.00 5.13 8.00 8.82 15.62 8.96 6.12 6.38 16.67 8.77 6.94 10.20 6.15 4.55 4.76 1.35 15.00 6.48 12.82 2.70 19.35 15.00 7.14 5.33 16.88 10.14 8.33 2.50 7.69 7.81 1.47 3.28 4.35 2.11 11.11 K jcn_only_AD Aats-val,I_chr2R_9088330_9088393,I_chr2R_9088412_9088502 chr2R + chr2R_9088330_9088502 chr2R_9088412_9088502 chr2R_9088503_9088602;chr2R_9088312_9088329 0.00 1.16 0.00 1.74 0.69 0.00 0.00 0.00 0.00 0.64 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.21 0.00 0.00 0.00 0.00 0.64 0.64 3.17 0.51 0.00 1.45 0.91 0.00 0.77 1.53 0.28 0.00 0.00 0.39 0.00 0.00 0.00 0.00 2.74 0.52 0.00 0.00 0.46 0.53 0.36 0.56 0.00 0.00 0.00 0.00 0.00 1.94 K jcn_only_AA CG10737 chr2R + chr2R_15062754_15063752;chr2R_15062754_15063692 chr2R_15062754_15063770 chr2R_15062592_15062753;chr2R_15063771_15063852 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention SP2637,Gint3 chr2R - chr2R_14530268_14545584 chr2R_14530267_14530268;chr2R_14545584_14545585 chr2R_14529910_14530267;chr2R_14545585_14545707 0.00 NA NA NA NA NA 4.55 NA 3.45 NA NA 5.56 NA NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 14.29 0.00 NA NA NA 0.00 NA NA 0.00 NA 7.14 NA 0.00 NA NA NA 0.00 5.88 0.00 NA 0.00 NA NA 0.00 NA 10.53 0.00 K intron_retention CG9641,I_chr2L_2986815_2987511 chr2L - chr2L_2975080_2975150 chr2L_2975079_2975080;chr2L_2975150_2975151 chr2L_2974966_2975079;chr2L_2975151_2976554 0.00 0.00 0.00 2.38 0.00 0.00 1.47 0.00 2.82 0.00 0.00 2.41 5.56 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.92 2.17 2.11 1.39 0.00 1.14 0.00 0.00 3.23 0.00 0.00 5.41 1.67 1.06 0.85 1.15 0.00 0.00 0.00 1.79 0.00 0.88 1.92 0.00 0.00 0.00 2.27 0.00 0.00 1.15 0.00 1.59 K intron_retention RpL31,CG1827 chr2R + chr2R_5475212_5475281 chr2R_5475211_5475212;chr2R_5475281_5475282 chr2R_5475113_5475211;chr2R_5475282_5475378 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.02 0.01 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.02 0.35 0.00 0.00 0.00 0.02 0.02 0.09 0.05 0.00 0.00 0.00 0.02 0.00 0.00 0.03 0.00 0.00 0.00 0.03 0.02 0.01 0.00 0.00 0.01 0.04 0.02 0.00 0.02 0.00 0.03 0.00 0.03 0.02 0.01 0.02 0.01 0.02 K intron_retention rgn chr3L + chr3L_21413463_21413564 chr3L_21413462_21413463;chr3L_21413564_21413565 chr3L_21413351_21413462;chr3L_21413565_21413789 50.00 43.40 43.33 73.68 42.42 37.04 84.62 51.22 46.15 48.15 59.09 42.42 40.74 53.12 43.18 46.34 50.00 45.45 40.00 49.18 56.67 23.81 47.17 59.52 55.56 58.62 58.33 93.33 70.83 48.15 50.00 50.00 51.43 40.00 50.00 61.29 57.14 48.57 47.54 43.10 NA 43.42 53.85 26.09 40.91 67.50 57.41 41.18 42.00 72.73 50.88 57.14 65.62 65.85 46.51 72.50 80.00 44.83 K alternative_donor CG7231 chr2L + chr2L_7985434_7985552;chr2L_7985442_7985552 chr2L_7985494_7985552 chr2L_7985553_7985768;chr2L_7985425_7985433 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA K intron_retention cdc2c,EI_chr3R_16561477_16561812,RI_chr3R_16562395_16562445 chr3R + chr3R_16561547_16561812 chr3R_16561546_16561547;chr3R_16561812_16561813 chr3R_16561320_16561546;chr3R_16561813_16561912 9.84 6.67 12.50 7.14 NA 0.00 0.00 0.00 9.52 NA NA 9.68 13.33 12.50 NA 0.00 NA NA 13.33 4.44 NA NA 9.52 14.29 NA NA 12.00 NA NA NA NA 0.00 NA 16.67 8.70 0.00 23.08 10.53 7.69 10.00 NA 7.41 0.00 26.67 NA 12.50 15.00 NA 12.50 7.41 3.12 15.38 7.69 NA 13.33 15.38 17.65 14.29 K jcn_only_AA Rbcn-3A chrX - chrX_6137848_6137905 chrX_6137866_6137905 chrX_6137906_6138157;chrX_6137623_6137847 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.32 0.00 0.27 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 K cassette CG32813 chrX + chrX_1282830_1283633 chrX_1282830_1282929;chrX_1283114_1283633 chrX_1282930_1283113 chrX_1282661_1282829;chrX_1283634_1284090 20.00 NA NA NA NA NA NA NA 18.18 NA NA NA NA NA NA NA NA NA NA 10.00 NA 50.00 NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 22.22 NA NA 25.00 NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA K intron_retention CG9894,RE_chr2L_2752712_2753371,I_chr2L_2753119_2753371,RI_chr2L_2755946_2756007 chr2L + chr2L_2752838_2753371 chr2L_2752837_2752838;chr2L_2753371_2753372 chr2L_2752820_2752837;chr2L_2753372_2753471 43.01 49.48 35.11 44.91 19.31 35.93 40.37 49.78 33.75 39.39 26.14 42.91 34.06 38.41 37.44 52.70 38.89 30.41 40.21 31.60 38.73 61.33 62.83 48.72 54.39 38.46 69.70 39.80 44.93 54.26 41.67 45.06 61.00 45.64 76.29 65.13 31.03 37.88 36.00 27.82 61.88 38.21 49.12 38.01 42.12 59.22 73.08 52.23 41.91 64.49 61.00 50.00 43.01 83.53 40.09 67.31 58.46 58.57 K intron_retention Cyp4e2,Cyp4e1 chr2R + chr2R_4332436_4332862 chr2R_4332435_4332436;chr2R_4332862_4332863 chr2R_4332244_4332435;chr2R_4332863_4332972 4.00 6.12 3.03 4.00 4.17 0.00 4.84 4.92 4.79 6.67 3.57 2.33 3.08 0.00 3.12 2.35 0.00 9.62 2.70 6.60 3.57 2.74 5.88 3.03 12.00 3.70 5.48 5.00 26.42 1.35 4.48 10.00 3.42 5.50 3.77 4.17 2.70 6.82 4.69 4.35 1.54 4.84 2.13 0.00 3.39 3.08 5.13 5.48 5.00 4.11 6.94 0.00 4.00 0.00 6.02 1.85 3.77 4.44 K alternative_donor par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,I_chr2R_15350149_15350210,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350285_15351846;chr2R_15350149_15351846;chr2R_15350437_15351846 chr2R_15350157_15351846 chr2R_15351847_15351914;chr2R_15350068_15350148 0.00 12.50 0.00 0.00 0.00 10.00 8.33 7.69 0.00 0.00 0.00 6.67 10.00 0.00 0.00 6.25 0.00 0.00 0.00 5.56 0.00 8.33 0.00 10.00 0.00 0.00 0.00 20.00 0.00 0.00 0.00 NA 0.00 0.00 16.67 11.11 0.00 0.00 0.00 10.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 14.29 0.00 NA 0.00 NA 12.50 0.00 K intron_retention TMS1 chr3L + chr3L_16408057_16408120 chr3L_16408056_16408057;chr3L_16408120_16408121 chr3L_16407921_16408056;chr3L_16408121_16408488 0.00 0.36 0.00 1.65 0.00 0.00 0.45 0.23 0.40 0.00 0.00 0.41 0.00 0.47 0.00 0.69 0.00 0.40 0.36 0.65 0.00 0.58 0.56 0.70 0.48 0.36 1.09 2.35 0.36 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.68 0.00 0.36 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.34 0.00 0.34 0.26 1.88 K intron_retention rin,I_chr3R_9476825_9476895 chr3R + chr3R_9472923_9473104 chr3R_9472922_9472923;chr3R_9473104_9473105 chr3R_9472709_9472922;chr3R_9473105_9473268 1.14 0.00 2.27 1.19 4.17 3.03 0.61 1.72 2.94 4.55 0.00 1.46 0.00 1.82 0.00 2.20 0.00 0.00 1.50 1.09 0.00 6.12 0.00 0.00 0.00 1.22 0.00 3.57 NA 2.56 1.87 0.00 1.37 0.86 0.00 0.00 0.00 0.00 6.45 3.45 9.09 1.36 0.88 4.35 0.00 NA 0.00 10.87 0.53 0.00 5.00 2.70 0.00 NA 1.97 0.00 0.00 5.88 K cassette Doa,I_chr3R_24715823_24718923,I_chr3R_24747391_24747896 chr3R + chr3R_24715823_24726545 chr3R_24715823_24718923;chr3R_24720785_24726545 chr3R_24718924_24720784 chr3R_24715727_24715822;chr3R_24726546_24726744 34.46 37.77 28.30 37.68 32.05 36.00 53.76 31.40 38.89 35.29 33.33 32.33 27.27 38.40 31.84 30.63 33.85 27.78 38.89 34.93 32.14 35.40 39.38 40.00 43.68 33.11 39.15 28.47 25.10 25.73 32.64 21.05 23.27 35.89 36.32 43.48 37.47 35.47 38.71 22.64 34.46 35.40 28.89 36.16 27.08 32.55 34.93 21.43 35.61 23.46 37.69 45.16 27.78 30.37 35.42 32.47 36.28 14.50 K intron_retention CG42394,noncoding_15936,E_chr3R_6675742_6676058 chr3R + chr3R_6675589_6675653 chr3R_6675588_6675589;chr3R_6675653_6675654 chr3R_6675581_6675588;chr3R_6675654_6675741 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA 6.67 NA 0.00 0.00 0.00 1.19 NA NA NA NA NA 0.00 0.00 0.00 0.00 7.69 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention CG1746,I_chr3R_27043646_27044664,I_chr3R_27043667_27043890,I_chr3R_27043667_27044393,RI_chr3R_27044771_27045268 chr3R - chr3R_27043667_27044664 chr3R_27043666_27043667;chr3R_27044664_27044665 chr3R_27043567_27043666;chr3R_27044665_27044764 0.00 0.00 0.07 0.07 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.19 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24348983_24349248 chr3R_24348982_24348983;chr3R_24349248_24349249 chr3R_24348417_24348982;chr3R_24349249_24349345 12.50 16.28 12.50 11.67 12.00 18.18 17.65 13.41 12.50 25.00 15.00 9.30 6.67 6.67 15.22 23.53 14.29 18.92 15.38 10.09 5.26 0.00 12.20 7.69 14.81 0.00 7.32 NA 31.25 NA 0.00 14.29 NA 25.00 NA 14.63 9.62 9.52 9.80 17.02 0.00 10.26 18.18 15.00 13.04 10.00 8.33 9.52 13.33 15.38 11.76 5.88 15.79 0.00 5.26 14.81 10.17 18.18 K intron_retention CG1021,I_chr3R_2217711_2231390,RI_chr3R_2217711_2231463,I_chr3R_2218465_2231390,RI_chr3R_2218465_2231463,I_chr3R_2218682_2231463,I_chr3R_2219634_2231390,I_chr3R_2231271_2231390,I_chr3R_2231285_2231463,I_chr3R_2231383_2231463 chr3R - chr3R_2231383_2231463 chr3R_2231382_2231383;chr3R_2231463_2231464 chr3R_2231283_2231382;chr3R_2231464_2231490 95.00 88.89 100.00 95.83 100.00 95.00 95.65 100.00 86.84 89.47 100.00 87.88 96.43 95.24 95.24 96.43 100.00 91.67 95.00 96.77 93.33 76.19 90.62 96.43 95.45 93.75 92.31 84.62 95.00 95.00 90.48 91.67 95.83 86.67 96.43 97.06 95.00 94.74 95.00 82.35 96.97 97.14 92.31 86.21 94.44 75.68 82.61 85.00 88.24 96.55 88.24 100.00 96.88 93.75 91.67 90.91 100.00 89.58 K jcn_only_AD Chc,RI_chrX_15728405_15729273,I_chrX_15728405_15729401,I_chrX_15728946_15729357 chrX - chrX_15728405_15729260;chrX_15728405_15729370;chrX_15728405_15729357;chrX_15728405_15729319 chrX_15728405_15729476 chrX_15728305_15728404;chrX_15729477_15729501 0.00 0.83 0.53 1.17 0.00 0.00 0.00 0.50 0.29 0.00 0.00 1.14 0.00 1.08 1.83 0.23 2.13 0.00 0.84 0.54 0.00 0.55 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.91 1.12 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.53 0.00 1.53 1.14 0.00 NA 0.00 0.00 0.92 0.43 0.00 0.62 0.00 0.00 0.00 0.56 0.00 0.00 0.00 K alternative_donor CG32772,CG6903 chrX + chrX_4803353_4803484;chrX_4803242_4803484;chrX_4803206_4803484 chrX_4803395_4803484 chrX_4803485_4803830;chrX_4803181_4803205 50.00 NA NA 50.00 NA NA 25.00 100.00 60.00 NA NA 25.00 NA 40.00 NA 50.00 NA NA 66.67 NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA 50.00 33.33 NA NA 50.00 NA NA 100.00 NA NA NA NA NA NA NA NA 14.29 K alternative_acceptor Papss chr3L + chr3L_19838529_19838634;chr3L_19838529_19838596 chr3L_19838529_19838611 chr3L_19838397_19838528;chr3L_19838635_19838730 62.20 41.67 50.00 44.44 83.33 NA 50.00 72.22 61.90 42.86 28.57 57.89 50.00 66.67 77.78 52.94 57.14 70.00 72.73 60.71 NA 83.33 66.67 61.54 63.64 50.00 50.00 42.86 75.00 70.00 61.54 NA 84.62 57.14 55.56 50.00 64.29 75.00 75.00 75.00 75.00 59.26 66.67 42.86 85.71 75.00 58.33 83.33 72.22 45.45 69.23 60.00 50.00 62.50 57.14 66.67 64.29 73.68 K alternative_acceptor jim,I_chr3L_22791582_22791898 chr3L - chr3L_22792291_22792350 chr3L_22792303_22792350 chr3L_22792351_22792548;chr3L_22791902_22792290 3.00 3.23 6.67 3.92 3.85 4.55 0.00 3.33 2.27 0.00 NA 3.85 0.00 0.00 0.00 0.00 0.00 4.17 3.85 0.00 0.00 2.78 3.39 2.70 3.23 3.45 0.00 3.45 5.56 2.78 4.76 NA 7.69 5.00 0.00 3.23 2.33 2.27 1.85 1.67 NA 4.17 6.25 2.13 0.00 4.35 3.70 6.52 0.00 4.00 4.76 0.00 0.00 0.00 0.00 6.67 0.00 7.41 K jcn_only_AD chico,I_chr2L_10246534_10246899 chr2L - chr2L_10246040_10246184;chr2L_10246040_10247024;chr2L_10246040_10246755;chr2L_10246040_10246899 chr2L_10246040_10246867 chr2L_10245878_10246039;chr2L_10247025_10247051 9.09 13.16 6.38 8.33 4.17 11.54 10.42 15.87 10.11 NA 12.12 11.69 2.56 8.82 7.89 12.82 9.38 15.00 9.62 11.24 12.90 2.33 4.29 17.39 10.00 20.00 16.33 9.76 20.00 4.55 6.25 4.00 13.16 10.17 3.23 8.51 2.90 11.32 8.77 3.70 NA 13.85 11.11 8.20 8.33 5.88 3.12 9.09 9.76 4.88 6.90 6.06 13.16 4.55 6.52 3.33 0.00 10.81 K jcn_only_AA I_chr4_247410_247797,yellow-h,R_chr4_261460_261560,I_chr4_264634_265805 chr4 + chr4_248867_249562 chr4_248867_249530 chr4_248662_248866;chr4_249563_249805 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 97.56 NA 95.83 100.00 95.74 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention CG9588,omd chr3R - chr3R_9501459_9501522 chr3R_9501458_9501459;chr3R_9501522_9501523 chr3R_9500847_9501458;chr3R_9501523_9501849 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.04 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 4.44 2.56 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 K alternative_donor Nmda1,R_chr2R_8766216_8766562,I_chr2R_8766652_8766956,I_chr2R_8766728_8766791,I_chr2R_8766728_8767623 chr2R - chr2R_8766652_8766956 chr2R_8766652_8766727 chr2R_8766628_8766651;chr2R_8766957_8766983 50.00 NA 42.86 NA NA NA 85.71 87.50 44.44 NA NA 42.86 NA NA NA 50.00 NA NA NA 33.33 NA NA NA NA NA NA NA 93.33 NA NA 50.00 NA NA 42.86 NA NA 42.86 NA NA 83.33 NA 50.00 NA 42.86 NA NA NA NA 60.00 NA NA NA NA NA NA NA NA 50.00 K jcn_only_AD CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1666219_1670203;chr2R_1666219_1670219;chr2R_1666219_1670325;chr2R_1666219_1670281 chr2R_1666219_1669803 chr2R_1666119_1666218;chr2R_1670326_1670328 12.90 4.55 10.81 15.00 10.00 4.00 20.00 7.27 5.45 16.00 10.00 6.25 0.00 12.12 9.68 17.91 10.53 16.00 27.27 6.94 0.00 NA 7.69 21.74 NA 14.29 18.52 NA 12.90 13.04 8.51 22.58 17.24 9.09 17.39 35.00 23.81 NA NA 5.56 12.12 12.28 12.90 15.22 9.52 7.41 NA 16.22 11.11 19.05 28.57 13.64 14.29 NA 10.53 NA 28.57 14.29 K intron_retention bbc,I_chr2R_9376554_9377246,REI_chr2R_9379401_9381986 chr2R - chr2R_9375638_9378939 chr2R_9375637_9375638;chr2R_9378939_9378940 chr2R_9375479_9375637;chr2R_9378940_9379098 49.35 47.96 60.87 40.00 45.33 53.70 45.04 53.66 54.49 54.05 37.89 56.10 38.53 58.93 55.56 48.74 50.75 40.00 50.00 45.51 34.91 76.47 56.47 46.77 45.45 50.00 48.03 49.51 35.64 57.97 63.77 58.54 54.17 55.14 59.52 36.36 47.37 57.78 42.48 44.90 30.30 48.03 45.45 49.35 26.92 49.15 59.02 61.76 47.90 40.66 52.08 50.00 40.00 52.54 50.57 45.35 39.29 51.85 K jcn_only_AA Eb1,RI_chr2R_2640290_2642206,I_chr2R_2640494_2642206,I_chr2R_2641187_2642206,RI_chr2R_2641944_2642025,I_chr2R_2641954_2642206,I_chr2R_2642491_2642549 chr2R + chr2R_2641944_2642206 chr2R_2641944_2642025 chr2R_2641854_2641943;chr2R_2642207_2642306 0.41 0.28 0.19 0.16 0.00 0.00 0.20 0.35 0.69 0.45 0.74 0.38 0.66 0.75 0.00 0.23 0.22 0.19 0.20 0.41 0.18 2.09 0.33 0.44 0.73 0.67 0.63 2.22 0.79 0.60 0.90 1.24 0.94 0.00 0.16 0.94 0.39 0.62 0.33 1.36 1.39 0.26 0.25 1.45 0.81 0.46 0.21 0.84 0.31 1.51 0.51 0.44 0.00 0.13 0.30 0.75 0.12 0.00 K intron_retention I_chr2L_837379_847733,CG4291 chr2L - chr2L_852443_852498 chr2L_852442_852443;chr2L_852498_852499 chr2L_851718_852442;chr2L_852499_852571 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 5.06 0.00 0.00 0.00 0.00 6.25 7.41 22.73 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8334,I_chr3L_19870731_19870822 chr3L + chr3L_19870731_19871932 chr3L_19870730_19870731;chr3L_19871932_19871933 chr3L_19870684_19870730;chr3L_19871933_19872579 5.28 NA 4.76 8.62 0.00 4.00 10.81 8.51 4.26 NA 11.76 10.53 5.00 11.76 0.00 0.00 0.00 12.50 4.35 12.20 NA 7.32 4.35 5.56 NA 0.00 12.50 0.00 0.00 7.69 6.90 6.25 4.17 9.38 0.00 20.69 8.70 0.00 0.00 10.87 4.55 7.84 0.00 5.56 3.57 3.70 NA 6.25 0.00 NA 11.11 NA NA NA 7.14 NA NA 2.86 K intron_retention Fak56D,F_chr2R_15323055_15323097 chr2R - chr2R_15319898_15321006 chr2R_15319897_15319898;chr2R_15321006_15321007 chr2R_15319808_15319897;chr2R_15321007_15321146 2.94 0.00 0.00 10.81 0.00 0.00 0.00 7.69 1.85 33.33 11.76 2.94 0.00 0.00 0.00 15.38 NA 0.00 NA 4.44 13.33 NA 0.00 NA NA 0.00 7.69 14.29 NA NA 7.41 NA NA 8.00 NA 14.29 0.00 12.50 5.26 8.33 13.33 5.13 0.00 0.00 NA 0.00 NA 5.88 0.00 0.00 NA NA NA NA 4.35 NA NA 0.00 K intron_retention Past1,I_chr3R_8529216_8529360 chr3R + chr3R_8529216_8529360 chr3R_8529215_8529216;chr3R_8529360_8529361 chr3R_8529116_8529215;chr3R_8529361_8529460 88.89 NA NA NA NA NA NA NA NA NA NA 69.23 NA NA NA NA NA NA NA NA NA 92.31 91.67 88.89 NA NA 91.67 91.30 60.00 NA NA NA 77.78 NA NA NA 90.91 NA 75.00 94.12 100.00 78.57 NA 88.89 NA 83.33 88.89 68.75 NA NA 88.89 NA NA NA NA NA NA 100.00 K intron_retention C3G chrX - chrX_6681300_6681383 chrX_6681299_6681300;chrX_6681383_6681384 chrX_6681291_6681299;chrX_6681384_6681553 94.37 93.02 85.37 96.00 94.29 88.89 91.57 97.73 92.31 95.83 96.97 89.86 96.30 83.33 90.48 92.68 97.06 89.19 97.67 91.76 97.56 98.33 93.55 97.83 94.94 96.61 93.75 95.00 96.88 83.72 86.05 96.67 94.44 96.49 93.18 98.90 94.44 100.00 96.83 92.42 97.96 91.86 94.12 90.91 96.15 97.78 83.33 94.37 96.92 95.24 93.33 92.59 88.89 85.00 87.76 93.55 100.00 94.87 K intron_retention CG17255,I_chrX_10366177_10366615,RI_chrX_10366177_10367270 chrX - chrX_10366177_10367360 chrX_10366176_10366177;chrX_10367360_10367361 chrX_10366077_10366176;chrX_10367361_10367370 56.70 56.25 57.14 57.14 55.56 55.56 60.00 87.50 55.56 87.50 81.82 57.58 55.00 75.00 47.83 56.25 47.83 46.67 56.00 75.00 47.06 46.15 50.00 63.16 69.23 42.11 63.16 90.00 72.73 53.33 53.85 NA 56.00 67.50 56.25 NA 40.91 70.00 50.00 58.82 NA 58.54 75.00 45.45 NA 60.00 NA 62.50 63.41 60.00 57.69 45.45 NA NA 56.00 NA NA 46.15 K intron_retention qkr58E-2,I_chr2R_18305142_18305207 chr2R + chr2R_18305142_18305207 chr2R_18305141_18305142;chr2R_18305207_18305208 chr2R_18305042_18305141;chr2R_18305208_18305307 98.18 97.50 97.56 100.00 100.00 100.00 98.68 97.40 99.19 95.65 97.14 98.82 100.00 97.73 97.67 96.67 98.00 100.00 94.44 99.11 100.00 98.00 98.18 97.83 100.00 97.83 98.15 97.06 97.50 95.12 98.08 100.00 100.00 98.88 100.00 100.00 97.67 100.00 100.00 98.46 100.00 98.98 97.37 100.00 97.78 98.57 100.00 97.67 98.98 97.87 98.08 100.00 97.22 100.00 100.00 96.08 98.11 94.81 K intron_retention CG14899 chr3R - chr3R_12309506_12309589 chr3R_12309505_12309506;chr3R_12309589_12309590 chr3R_12308985_12309505;chr3R_12309590_12309923 1.85 2.01 0.00 4.46 0.00 0.00 1.98 3.85 3.09 0.00 1.49 1.33 4.84 4.55 1.32 7.04 1.92 3.03 0.00 4.09 0.00 3.51 1.14 2.63 2.27 0.00 3.57 4.21 3.81 0.00 0.00 0.00 3.17 0.00 2.78 0.00 0.50 1.31 0.99 1.99 0.00 2.01 1.85 0.00 2.27 5.31 1.61 0.00 4.51 1.75 3.25 1.22 2.41 1.71 3.17 2.61 1.68 0.00 K intron_retention EF_chr2R_8548702_8595112,nemy chr2R - chr2R_8559647_8559706 chr2R_8559646_8559647;chr2R_8559706_8559707 chr2R_8559062_8559646;chr2R_8559707_8560092 99.31 99.15 98.21 99.04 98.36 98.55 98.91 98.88 100.00 99.07 100.00 99.20 97.22 98.46 100.00 100.00 100.00 97.26 100.00 99.35 100.00 99.40 100.00 98.86 99.00 100.00 99.31 99.19 99.35 99.26 100.00 98.95 100.00 98.99 99.06 100.00 99.54 98.75 99.50 99.48 99.12 99.33 100.00 98.29 99.31 99.32 100.00 100.00 99.32 99.31 99.53 98.98 97.95 97.69 98.86 100.00 98.65 99.38 N jcn_only_AA Adgf-A,Msi,F_chr3L_17749926_17757161 chr3L - chr3L_17749920_17757161;chr3L_17747522_17757161;chr3L_17756677_17757161 chr3L_17747526_17757161 chr3L_17757162_17757241 72.75 71.49 70.49 70.81 70.95 72.21 71.28 73.29 73.25 66.45 72.11 74.17 74.13 74.31 75.63 72.75 76.85 76.97 73.83 73.85 74.20 74.55 70.24 76.36 69.15 74.20 69.92 74.43 69.18 69.47 76.68 74.01 73.03 68.99 67.06 75.43 71.86 72.32 74.25 69.77 71.89 73.55 67.32 71.84 73.79 71.77 70.74 70.05 74.96 80.46 67.40 71.51 73.92 78.08 76.64 73.39 70.22 71.34 K cassette CG6206,I_chr2L_10459281_10459879,I_chr2L_10459518_10459620,I_chr2L_10459518_10459661 chr2L + chr2L_10459281_10459879;chr2L_10459281_10459661 chr2L_10459281_10459383;chr2L_10459518_10459661,chr2L_10459518_10459879 chr2L_10459384_10459517 chr2L_10459181_10459280;chr2L_10459880_10459979 100.00 100.00 100.00 99.02 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 97.92 97.22 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.48 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 98.70 100.00 100.00 94.74 100.00 100.00 98.00 100.00 100.00 96.67 K intron_retention CG9240 chrX - chrX_15594841_15595021 chrX_15594840_15594841;chrX_15595021_15595022 chrX_15594205_15594840;chrX_15595022_15595215 0.00 1.59 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 2.11 0.00 0.00 1.59 0.00 0.00 0.00 3.39 5.56 4.17 0.00 0.00 0.00 3.70 0.00 4.76 4.17 0.00 0.00 2.27 2.22 0.00 0.00 0.00 0.00 3.12 0.00 1.54 0.00 0.00 4.35 1.75 0.00 1.67 0.00 2.17 2.99 4.62 0.00 K intron_retention ras chrX + chrX_10639523_10639710 chrX_10639522_10639523;chrX_10639710_10639711 chrX_10639459_10639522;chrX_10639711_10639997 7.92 7.69 16.13 7.84 10.00 13.04 3.70 6.52 5.88 NA 6.25 8.82 3.45 5.13 11.54 5.13 7.41 4.35 16.67 10.34 6.25 7.14 10.64 9.09 10.53 4.76 20.00 34.48 40.00 5.88 8.82 7.69 NA 9.30 0.00 0.00 20.00 8.00 14.81 5.71 NA 5.97 12.50 10.00 7.14 9.52 7.69 NA 3.92 14.71 7.32 10.53 9.09 NA 5.71 7.69 13.79 8.33 K intron_retention eIF5B,I_chr3L_3429084_3443457,I_chr3L_3432366_3445364 chr3L - chr3L_3429084_3432203 chr3L_3429083_3429084;chr3L_3432203_3432204 chr3L_3428984_3429083;chr3L_3432204_3432365 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr2R_16158045_16158109,CG11788 chr2R + chr2R_16162234_16162292 chr2R_16162233_16162234;chr2R_16162292_16162293 chr2R_16162174_16162233;chr2R_16162293_16163432 8.00 25.00 0.00 NA 10.00 6.67 5.88 9.09 7.55 NA NA 0.00 0.00 0.00 9.09 6.67 10.00 0.00 8.00 12.50 3.85 19.05 20.00 21.43 NA NA 14.29 10.00 NA NA 27.78 NA 7.41 4.35 NA NA 0.00 10.53 6.67 16.67 NA 5.13 0.00 6.67 13.04 8.33 NA 4.55 5.26 9.52 11.76 7.14 0.00 0.00 13.04 12.50 8.33 8.33 K intron_retention CG33558,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,I_chr2R_2820149_2820628,EI_chr2R_2820947_2821570,CREI_chr2R_2832933_2850384 chr2R - chr2R_2817876_2820628 chr2R_2817875_2817876;chr2R_2820628_2820629 chr2R_2817851_2817875;chr2R_2820629_2820728 20.00 20.00 NA NA NA NA 36.36 33.33 25.00 NA NA NA NA NA NA NA NA NA NA NA NA 8.00 15.15 25.00 NA NA 15.38 NA NA NA NA NA NA 30.77 NA NA 20.00 0.00 14.29 37.50 20.00 31.82 NA NA NA 11.11 12.50 25.00 33.33 2.56 12.50 NA NA 4.76 NA NA NA 41.67 N jcn_only_AD CG9338,CG31675 chr2L + chr2L_20865586_20866935 chr2L_20866001_20866935 chr2L_20866936_20867640;chr2L_20865412_20865585 0.00 2.73 0.00 6.67 0.00 0.00 0.00 3.48 2.95 0.00 0.00 3.62 0.00 3.98 0.00 0.00 0.00 0.00 0.00 3.22 0.00 0.00 5.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.67 5.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.02 0.00 0.00 0.00 0.00 0.00 0.00 4.46 0.00 2.88 0.00 0.00 0.00 3.17 3.79 0.00 0.00 K cassette CG14764,RI_chr2R_3841817_3841882 chr2R - chr2R_3836026_3842817 chr2R_3836026_3841406;chr2R_3841817_3842817 chr2R_3841407_3841816 chr2R_3835926_3836025;chr2R_3842818_3843324 100.00 97.78 100.00 98.84 100.00 100.00 98.59 100.00 100.00 100.00 100.00 98.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 K alternative_donor CG10080 chr2R + chr2R_17517559_17517991 chr2R_17517589_17517991 chr2R_17517992_17518052;chr2R_17517196_17517558 30.56 30.56 32.14 22.50 38.89 33.33 26.32 11.11 24.00 22.22 32.00 31.91 25.93 31.03 20.00 22.86 19.35 26.67 28.00 21.62 26.67 48.84 30.30 33.33 35.29 17.24 31.43 16.22 31.43 23.81 37.04 32.00 32.00 18.00 50.00 42.11 28.81 27.78 38.89 24.39 26.67 26.09 26.09 36.00 40.91 42.42 40.91 38.10 37.04 26.09 37.50 32.00 28.00 36.84 26.67 21.05 31.82 31.03 K alternative_acceptor CG32202 chr3L + chr3L_18675478_18675538 chr3L_18675478_18675524 chr3L_18675302_18675477;chr3L_18675539_18675973 4.35 NA 0.00 9.68 NA 0.00 3.03 5.13 2.56 NA 0.00 0.00 NA 9.52 10.53 3.03 NA 0.00 0.00 3.17 0.00 5.00 17.24 5.56 7.69 4.35 35.71 13.33 0.00 0.00 9.09 14.29 9.09 5.56 0.00 NA NA 0.00 4.76 3.45 8.70 6.67 6.25 0.00 9.09 0.00 0.00 0.00 2.94 11.11 4.76 NA 0.00 5.88 6.25 11.76 3.85 3.03 K alternative_donor Khc,EI_chr2R_12157759_12157824 chr2R - chr2R_12157759_12158843 chr2R_12157759_12157824 chr2R_12157659_12157758;chr2R_12158844_12159487 1.67 1.77 1.96 2.91 0.92 1.00 1.71 1.85 1.97 1.11 2.11 2.90 2.08 1.08 0.85 1.55 0.95 2.15 1.80 1.81 0.93 4.03 1.13 1.79 1.15 0.76 2.16 4.00 2.80 1.41 3.54 2.08 1.67 2.30 1.18 0.91 2.09 0.87 1.28 1.91 2.00 1.58 1.19 1.28 1.72 0.89 1.98 1.95 1.61 1.74 1.56 2.41 1.67 1.32 1.43 1.00 1.27 1.54 K intron_retention Dscam,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3249373_3250836 chr2R_3249372_3249373;chr2R_3250836_3250837 chr2R_3249273_3249372;chr2R_3250837_3250956 47.83 NA NA 47.83 NA NA NA 45.45 NA NA NA NA NA NA NA NA NA NA 69.23 NA NA 73.33 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG32529 chrX + chrX_19781526_19793044 chrX_19781525_19781526;chrX_19793044_19793045 chrX_19781512_19781525;chrX_19793045_19793075 58.47 NA 71.43 56.67 NA 50.00 68.00 64.71 53.33 NA NA 61.29 55.00 63.16 75.00 67.86 72.73 NA 36.84 55.56 60.00 38.46 53.85 NA NA 72.73 76.92 NA 42.86 33.33 65.00 NA 37.50 45.16 58.33 28.57 NA NA NA 61.11 NA 58.62 88.89 NA NA 53.85 NA 39.29 66.67 NA 64.71 63.64 NA NA 55.56 NA NA 38.89 K intron_retention CG8412,I_chr3R_5583152_5583200 chr3R + chr3R_5582727_5582786 chr3R_5582726_5582727;chr3R_5582786_5582787 chr3R_5582260_5582726;chr3R_5582787_5582915 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 1.39 0.00 2.08 0.00 0.00 0.00 4.17 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Stim chrX - chrX_15831788_15832790 chrX_15831788_15832264;chrX_15832369_15832790 chrX_15832265_15832368 chrX_15831624_15831787;chrX_15832791_15833231 3.81 5.97 2.70 1.67 2.86 1.92 1.52 1.68 2.41 3.23 9.09 1.08 0.00 5.56 2.70 5.56 1.67 4.62 1.41 3.81 6.98 7.32 5.45 4.41 5.41 1.41 2.56 2.33 3.23 10.81 15.62 5.26 5.13 3.26 5.71 0.00 6.45 1.61 4.11 5.66 3.23 2.24 3.92 3.85 4.17 8.33 6.52 9.09 3.88 2.04 7.14 3.85 0.00 3.70 2.63 6.52 2.44 2.94 K intron_retention Atx2,CE_chr3R_11234606_11238462 chr3R + chr3R_11234912_11237842 chr3R_11234911_11234912;chr3R_11237842_11237843 chr3R_11234821_11234911;chr3R_11237843_11238243 0.00 0.00 0.00 6.25 0.00 3.12 5.00 0.00 3.00 0.00 0.00 1.59 0.00 0.00 2.38 0.00 3.45 9.09 9.68 1.30 0.00 9.68 3.64 0.00 0.00 0.00 3.08 2.47 5.56 2.08 12.50 NA 0.00 1.67 3.23 0.00 0.00 0.00 1.15 0.00 0.00 2.35 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 4.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Dsp1,I_chrX_16231287_16231413 chrX + chrX_16227752_16228333 chrX_16227751_16227752;chrX_16228333_16228334 chrX_16227698_16227751;chrX_16228334_16228446 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.86 100.00 95.45 98.28 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K multi_cassette CG6854,E_chr3L_15091621_15103920,chr3L_15091617_15091865.0,chr3L_15093344_15094204.0,chr3L_15094261_15095048.0,RI_chr3L_15102059_15102345 chr3L + chr3L_15091617_15102643 chr3L_15091617_15101715;chr3L_15102059_15102437;chr3L_15102588_15102643 chr3L_15101716_15102058;chr3L_15102438_15102587 chr3L_15091548_15091616;chr3L_15102644_15103437 100.00 100.00 100.00 87.50 100.00 100.00 100.00 87.50 100.00 87.50 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 90.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 83.33 88.89 88.89 87.50 100.00 K intron_retention Arp14D,RE_chrX_16445264_16446372 chrX - chrX_16443182_16443253 chrX_16443181_16443182;chrX_16443253_16443254 chrX_16442302_16443181;chrX_16443254_16443445 99.28 100.00 98.48 99.21 100.00 96.61 99.03 100.00 97.58 100.00 94.59 99.15 100.00 100.00 98.65 100.00 98.33 98.55 98.73 100.00 97.87 97.73 97.44 97.62 100.00 98.44 100.00 100.00 100.00 100.00 98.80 100.00 100.00 100.00 100.00 100.00 97.30 95.83 100.00 98.97 98.86 99.28 100.00 100.00 98.51 100.00 92.31 100.00 99.28 100.00 97.44 100.00 100.00 100.00 98.82 100.00 98.04 98.37 K intron_retention AGO1,I_chr2R_9844856_9845327 chr2R - chr2R_9838423_9839118 chr2R_9838422_9838423;chr2R_9839118_9839119 chr2R_9837637_9838422;chr2R_9839119_9839193 0.00 0.00 0.00 3.92 0.00 3.12 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 2.27 0.00 0.00 2.35 0.00 0.75 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.94 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 K cassette CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_157794_158016 chr4_157794_157848;chr4_157959_158016 chr4_157849_157958 chr4_157699_157793;chr4_158017_158243 96.55 97.44 93.62 93.46 97.14 97.62 96.77 98.01 94.81 92.86 97.14 99.09 98.28 97.10 98.15 95.86 95.08 95.83 95.79 96.67 96.30 100.00 94.29 92.00 86.21 82.54 97.37 100.00 83.33 96.55 97.37 90.91 100.00 94.89 97.06 96.30 94.74 93.33 95.83 97.62 92.31 96.59 96.88 97.44 88.89 93.33 100.00 94.29 97.78 100.00 97.56 96.55 88.89 100.00 95.59 92.31 100.00 100.00 K intron_retention UbcD2,noncoding_2473,CG6724 chr2L - chr2L_10767013_10767656 chr2L_10767012_10767013;chr2L_10767656_10767657 chr2L_10766391_10767012;chr2L_10767657_10767740 1.04 0.00 0.00 1.28 0.00 0.00 1.72 3.14 2.02 0.00 0.98 2.23 0.00 0.00 1.77 1.59 2.78 0.00 2.15 1.04 1.09 1.41 0.00 3.12 0.00 1.94 3.57 2.78 2.08 0.00 1.22 0.00 0.00 1.35 0.00 0.00 1.65 2.11 0.00 2.53 0.00 1.03 1.03 0.00 0.00 0.00 0.00 2.29 1.09 2.82 2.44 2.50 0.00 0.00 3.51 0.00 0.00 2.00 K intron_retention CG16791 chr3R - chr3R_17149250_17149337 chr3R_17149249_17149250;chr3R_17149337_17149338 chr3R_17149161_17149249;chr3R_17149338_17149475 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Zn72D,RF_chr3L_16100887_16102721,I_chr3L_16105199_16105253 chr3L - chr3L_16102155_16102721 chr3L_16102154_16102155;chr3L_16102721_16102722 chr3L_16102090_16102154;chr3L_16102722_16102821 20.00 20.00 20.00 20.83 NA 26.67 28.57 28.57 24.14 NA 22.22 21.88 NA 40.00 30.00 29.41 NA NA NA 15.15 25.00 0.00 15.62 20.00 23.08 NA 16.67 23.53 26.09 26.92 11.86 19.05 6.25 29.73 15.00 15.00 26.09 35.29 28.57 15.15 10.71 23.08 25.00 9.09 12.50 18.75 15.00 12.50 34.48 NA 18.52 NA 21.05 NA 19.05 13.33 0.00 17.14 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2392054;chrX_2392149_2392515;chrX_2392665_2395659 chrX_2392055_2392148;chrX_2392516_2392664 chrX_2387149_2387248;chrX_2395660_2395759 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.59 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 1.01 0.76 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K intron_retention Mkp3 chr3L - chr3L_19063200_19078420 chr3L_19063199_19063200;chr3L_19078420_19078421 chr3L_19063082_19063199;chr3L_19078421_19079522 3.97 2.70 4.44 5.13 7.69 4.17 4.76 1.43 6.45 2.86 2.56 7.14 8.33 4.65 4.44 10.42 0.00 5.00 6.52 4.58 7.69 3.37 4.65 5.84 5.38 4.17 3.26 3.23 4.26 4.72 0.00 1.59 0.00 7.14 4.48 3.75 3.97 2.36 2.54 2.27 3.19 5.21 5.26 2.65 5.06 1.92 1.80 0.00 9.38 2.56 2.50 3.61 2.20 5.06 1.72 2.44 1.52 2.11 K intron_retention CG1746,I_chr3R_27042457_27043461,RNaseP:RNA,RI_chr3R_27044771_27045268 chr3R - chr3R_27042457_27043461 chr3R_27042456_27042457;chr3R_27043461_27043462 chr3R_27042432_27042456;chr3R_27043462_27043561 100.00 99.22 100.00 100.00 99.00 100.00 99.62 99.72 100.00 97.83 100.00 99.54 100.00 100.00 100.00 99.76 99.35 100.00 100.00 99.44 100.00 91.57 100.00 100.00 100.00 100.00 100.00 98.33 94.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 98.41 99.19 100.00 99.63 100.00 100.00 100.00 99.24 99.00 100.00 100.00 99.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG2225,Ef2b,I_chr2L_21681559_21681721,I_chr2L_21681559_21682037,I_chr2L_21681559_21737600,I_chr2L_21681561_21682041,I_chr2L_21681805_21682038 chr2L - chr2L_21681559_21682038 chr2L_21681805_21682038 chr2L_21682039_21682137;chr2L_21681461_21681558 0.01 0.00 0.03 0.01 0.00 0.00 0.03 0.02 0.01 0.00 0.00 0.03 0.00 0.03 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.04 0.03 0.02 0.06 0.03 0.05 0.07 0.05 0.02 0.03 0.00 0.03 0.00 0.00 0.02 0.02 0.00 0.02 0.04 0.17 0.01 0.00 0.00 0.00 0.04 0.00 0.00 0.01 0.03 0.03 0.00 0.03 0.00 0.00 0.00 0.02 0.00 K alternative_donor drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9390195;chr2R_9389597_9390151;chr2R_9389597_9389907;chr2R_9389597_9389940;chr2R_9389597_9390293;chr2R_9389597_9389751;chr2R_9389597_9390264;chr2R_9389597_9389757 chr2R_9389597_9389753 chr2R_9389497_9389596;chr2R_9390294_9390295 5.26 5.26 2.44 6.78 4.17 3.33 1.85 3.23 4.82 6.67 3.12 6.67 3.33 3.70 2.86 7.69 3.85 2.86 5.13 4.90 3.23 4.35 5.71 8.33 8.70 8.11 9.52 6.67 6.25 0.00 2.50 6.67 12.50 4.92 5.56 3.85 4.76 7.69 4.35 2.63 11.11 9.59 5.26 5.56 7.14 5.56 5.26 8.00 6.06 6.25 4.76 4.17 4.76 0.00 7.69 11.76 3.12 8.33 K intron_retention CG2118,I_chr3R_27617744_27617821,I_chr3R_27619193_27619598 chr3R - chr3R_27617807_27617865 chr3R_27617806_27617807;chr3R_27617865_27617866 chr3R_27617515_27617806;chr3R_27617866_27617921 0.00 NA 0.00 9.52 0.00 0.00 5.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 15.38 0.00 0.00 4.35 0.00 NA 0.00 0.00 0.00 0.00 NA 4.26 0.00 0.00 0.00 7.41 NA 0.00 4.65 0.00 4.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention AGO2 chr3L + chr3L_15552104_15552199 chr3L_15552103_15552104;chr3L_15552199_15552200 chr3L_15551494_15552103;chr3L_15552200_15552361 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.86 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.53 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG17683,I_chr2R_18774_18869 chr2R + chr2R_18774_18826;chr2R_18774_18869 chr2R_18774_18851 chr2R_18768_18773;chr2R_18870_18969 10.55 20.00 25.00 10.00 14.29 16.67 15.00 8.00 4.55 0.00 0.00 5.56 14.29 0.00 9.09 18.75 9.09 0.00 9.09 18.75 20.00 9.09 18.18 33.33 0.00 25.00 8.33 NA 0.00 0.00 15.79 0.00 10.00 5.88 18.18 45.45 0.00 16.67 16.67 16.67 21.43 11.76 8.33 0.00 0.00 18.18 16.67 11.11 6.25 12.50 22.22 12.50 0.00 16.67 6.67 11.11 9.09 7.69 K jcn_only_AA CG8080,RI_chr2R_4978542_4978911,REI_chr2R_4978545_4978911,REI_chr2R_4979159_4979234,I_chr2R_4979276_4979936 chr2R - chr2R_4978557_4978911;chr2R_4978542_4978911 chr2R_4978545_4978911 chr2R_4978912_4979011;chr2R_4978445_4978541 19.20 6.06 21.74 21.74 29.17 22.73 33.33 16.22 15.25 19.35 NA 7.14 10.00 20.00 17.65 13.04 10.00 21.43 26.09 31.82 NA NA 26.47 20.59 33.33 12.90 29.17 NA 13.04 14.71 18.75 9.68 14.63 22.45 NA 3.70 21.74 25.00 9.76 24.24 16.00 22.41 11.54 14.63 14.81 21.67 30.77 19.70 16.92 43.59 17.02 14.29 18.42 19.05 24.32 22.50 23.53 18.18 K intron_retention CG5958 chr2L - chr2L_7430856_7431078 chr2L_7430855_7430856;chr2L_7431078_7431079 chr2L_7430529_7430855;chr2L_7431079_7431540 0.00 0.00 0.00 0.85 1.90 0.00 2.07 1.08 1.49 0.00 0.00 0.00 2.34 0.00 0.00 1.50 0.00 0.00 0.00 0.37 0.69 0.00 0.77 1.23 0.00 0.00 0.00 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.67 0.00 0.45 0.00 0.00 0.00 0.00 1.14 0.00 1.50 0.54 0.53 0.00 0.53 0.00 1.56 1.19 0.71 1.76 K intron_retention Ac78C,F_chr3L_21141024_21153737 chr3L - chr3L_21130895_21130953 chr3L_21130894_21130895;chr3L_21130953_21130954 chr3L_21130666_21130894;chr3L_21130954_21131357 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 3.85 0.00 0.00 K jcn_only_AA EI_chr3R_4647896_4648190,CG8379 chr3R + chr3R_4650612_4650676 chr3R_4650612_4650673 chr3R_4650410_4650611;chr3R_4650677_4651130 57.58 58.93 52.78 53.33 69.23 60.53 44.83 64.47 54.39 62.07 52.50 60.38 46.34 69.57 57.58 43.75 NA 57.14 52.63 56.93 64.29 58.82 56.48 57.61 60.38 67.74 51.39 55.71 61.40 68.25 64.52 54.76 47.27 61.02 64.41 50.00 61.70 47.37 54.44 60.24 57.58 49.40 60.61 60.26 61.54 56.45 50.00 59.09 55.66 61.82 54.05 66.15 54.00 68.29 65.12 48.00 51.22 53.12 K jcn_only_AD e(y)3,I_chrX_19530503_19530884,I_chrX_19530503_19531405 chrX - chrX_19530503_19531650;chrX_19530503_19531405;chrX_19530503_19532222 chrX_19530503_19530884 chrX_19530403_19530502;chrX_19532223_19532322 9.33 15.56 8.33 5.56 13.73 3.39 10.42 7.14 8.74 3.57 7.14 3.26 10.20 4.17 5.45 3.45 13.46 10.00 6.25 4.95 5.88 8.20 5.56 9.38 10.34 10.53 8.47 16.67 4.08 9.62 9.43 4.17 12.96 12.79 6.00 10.00 10.00 0.00 9.86 10.00 15.00 6.19 16.67 7.69 21.74 18.60 7.14 9.72 9.28 4.00 11.27 10.91 7.41 NA 19.70 13.04 0.00 18.42 K intron_retention bora chr3L + chr3L_18616165_18616222 chr3L_18616164_18616165;chr3L_18616222_18616223 chr3L_18615694_18616164;chr3L_18616223_18617892 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2364640;chr2L_2361586_2364480;chr2L_2361586_2364836;chr2L_2361586_2365060;chr2L_2361586_2364302;chr2L_2361586_2364594;chr2L_2361586_2364312 chr2L_2361586_2364889 chr2L_2361486_2361585;chr2L_2365061_2365065 47.54 45.33 48.97 47.54 57.06 49.01 51.11 52.59 50.56 47.96 59.43 51.21 47.37 52.69 49.10 51.88 50.54 46.89 53.57 44.77 55.44 30.70 49.44 47.22 50.00 49.75 43.75 24.72 23.18 19.44 47.83 24.26 14.66 50.56 31.30 15.44 58.55 58.00 56.99 24.66 15.66 46.87 49.32 27.11 27.31 21.88 32.14 18.70 49.73 54.81 41.98 52.14 26.73 35.29 51.60 39.74 46.86 16.42 K intron_retention Hph chr3R + chr3R_1090925_1092474 chr3R_1090924_1090925;chr3R_1092474_1092475 chr3R_1090787_1090924;chr3R_1092475_1092754 71.43 NA 66.67 45.83 NA 87.50 73.33 64.71 64.00 NA NA 91.67 NA NA 63.64 82.35 77.78 66.67 81.82 70.59 NA NA 87.50 60.00 NA NA NA NA NA NA 71.43 NA NA 73.33 NA NA NA NA NA 77.78 54.55 80.00 NA NA 77.78 NA 54.55 63.64 84.21 NA 60.00 NA NA NA NA NA NA NA K intron_retention CG32343,I_chr3L_326540_326703,RI_chr3L_326725_326866 chr3L - chr3L_325825_325879 chr3L_325824_325825;chr3L_325879_325880 chr3L_325755_325824;chr3L_325880_325941 0.00 12.50 0.00 0.00 0.00 0.00 6.90 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 4.76 9.09 0.00 0.00 5.71 0.00 0.00 0.00 0.00 2.70 3.70 0.00 0.00 4.76 0.00 0.00 8.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Sdc,I_chr2R_17282542_17285569,RI_chr2R_17286086_17286391,I_chr2R_17286089_17286391,I_chr2R_17286819_17367595,I_chr2R_17324594_17367595 chr2R - chr2R_17282551_17286679;chr2R_17282551_17286391 chr2R_17282551_17285569;chr2R_17286086_17286679,chr2R_17286086_17286391 chr2R_17285570_17286085 chr2R_17282383_17282550;chr2R_17286680_17286818 83.42 88.29 76.58 93.79 74.47 74.26 74.19 82.67 85.29 74.36 69.51 78.54 48.72 84.44 86.36 91.82 84.71 75.32 78.35 86.02 83.54 83.96 83.43 83.61 82.22 74.23 78.91 68.09 83.62 89.84 85.86 86.57 84.04 81.33 91.95 77.55 83.42 88.28 77.96 62.89 79.10 81.99 86.25 94.04 78.99 87.16 78.00 86.83 85.96 79.25 82.58 81.71 91.06 85.33 76.47 81.71 90.60 92.50 K intron_retention CG11593 chr3L - chr3L_4040032_4040095 chr3L_4040031_4040032;chr3L_4040095_4040096 chr3L_4038814_4040031;chr3L_4040096_4040482 0.00 0.00 6.67 3.33 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 K intron_retention CG31431 chr3R + chr3R_17696656_17697703 chr3R_17696655_17696656;chr3R_17697703_17697704 chr3R_17696406_17696655;chr3R_17697704_17697862 90.59 91.11 84.00 91.35 88.46 91.07 84.13 94.81 83.54 100.00 92.42 87.93 98.36 85.48 88.75 93.07 89.83 88.00 89.47 94.05 98.18 86.36 84.09 85.11 87.50 91.78 90.57 96.30 76.92 86.67 96.47 90.00 91.49 92.08 87.10 96.55 92.86 81.25 85.71 85.96 93.44 88.08 90.91 90.91 95.45 91.46 95.12 94.29 90.91 82.35 87.30 83.72 96.55 96.15 90.59 90.48 88.10 91.67 K intron_retention Shc chr3L + chr3L_9420425_9420486 chr3L_9420424_9420425;chr3L_9420486_9420487 chr3L_9420175_9420424;chr3L_9420487_9421779 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 2.34 3.57 7.50 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 2.13 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG17082,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_645254_645312;chr2R_645254_645306 chr2R_645254_645316 chr2R_645185_645253;chr2R_645317_645382 3.23 10.71 0.00 2.61 4.55 2.38 1.11 3.45 3.92 NA 2.56 6.17 3.57 15.38 1.85 4.60 3.77 0.00 5.66 4.41 7.89 NA 0.00 2.27 0.00 2.00 0.00 NA 0.00 3.33 5.56 10.71 0.00 3.16 2.38 3.70 3.70 7.14 0.00 2.90 2.56 2.02 2.08 16.67 4.76 1.82 6.12 3.23 2.86 1.61 2.33 10.34 NA 0.00 7.50 4.69 3.92 4.00 K intron_retention Jhebp29,RI_chr2R_20857941_20857992,RI_chr2R_20857941_20858127 chr2R + chr2R_20857941_20857992 chr2R_20857940_20857941;chr2R_20857992_20857993 chr2R_20857841_20857940;chr2R_20857993_20858071 98.75 100.00 98.55 98.92 100.00 98.36 98.75 99.07 98.32 96.43 100.00 98.92 100.00 100.00 98.51 96.51 97.92 100.00 98.33 99.19 98.18 88.89 100.00 98.72 100.00 100.00 100.00 96.97 96.67 100.00 97.10 97.67 100.00 98.80 100.00 100.00 100.00 97.83 98.55 97.37 98.28 99.11 100.00 96.77 98.28 98.57 100.00 97.50 100.00 98.36 100.00 97.50 96.30 98.39 100.00 96.49 99.03 100.00 K alternative_donor alpha-Man-I,I_chrX_10218352_10219759,I_chrX_10218390_10219759 chrX - chrX_10218352_10219846;chrX_10218352_10219816;chrX_10218352_10219918;chrX_10218352_10219759;chrX_10218352_10219665;chrX_10218352_10219708 chrX_10218352_10219823 chrX_10218290_10218351;chrX_10219919_10219979 22.88 14.29 16.67 30.77 16.67 33.33 30.00 23.53 42.11 50.00 20.00 25.00 NA 33.33 25.00 19.05 16.67 16.67 25.00 35.71 16.67 33.33 50.00 28.57 28.57 14.29 12.50 NA NA 22.22 14.29 NA 28.57 8.33 NA 16.67 50.00 42.86 NA 25.00 16.67 15.38 25.00 16.67 NA 20.00 NA 22.22 40.00 33.33 20.00 25.00 20.00 NA 11.11 50.00 20.00 16.67 K intron_retention coro,I_chr2R_2752880_2760038,I_chr2R_2754447_2754986,I_chr2R_2754447_2755071 chr2R - chr2R_2754447_2760059 chr2R_2754446_2754447;chr2R_2760059_2760060 chr2R_2754347_2754446;chr2R_2760060_2760138 66.67 66.67 60.00 50.00 69.23 45.45 73.33 59.09 65.71 63.64 66.67 60.71 NA 86.67 70.00 75.00 66.67 71.43 76.92 70.27 63.64 71.43 53.57 68.18 58.33 53.33 71.43 50.00 43.75 73.33 70.59 70.00 50.00 66.67 63.64 60.00 57.14 53.33 60.87 71.05 NA 59.38 72.73 50.00 47.06 85.71 82.35 77.78 65.38 69.23 70.83 58.82 66.67 80.00 71.43 70.59 60.00 60.00 K intron_retention Pitslre,I_chr3L_20764965_20766192,I_chr3L_20764965_20766212,I_chr3L_20766064_20766192,I_chr3L_20766064_20766215,RI_chr3L_20766064_20766893,I_chr3L_20766311_20766664,I_chr3L_20766311_20766893,I_chr3L_20766773_20766893 chr3L + chr3L_20766064_20766893 chr3L_20766063_20766064;chr3L_20766893_20766894 chr3L_20766035_20766063;chr3L_20766894_20766993 76.39 NA NA NA NA NA NA 83.33 93.75 NA NA 93.33 NA 88.89 NA 90.00 NA NA NA 82.35 NA 96.15 70.83 64.29 NA NA 81.25 75.00 72.73 63.64 47.06 NA 78.57 87.50 NA 66.67 52.94 53.85 66.67 80.95 NA 86.67 NA 73.33 NA 75.00 60.00 87.50 100.00 60.00 78.95 63.64 NA NA 77.78 75.00 NA NA K intron_retention tral,I_chr3L_12512171_12512251 chr3L + chr3L_12510160_12510527 chr3L_12510159_12510160;chr3L_12510527_12510528 chr3L_12509677_12510159;chr3L_12510528_12511057 1.37 1.24 0.00 2.05 3.30 0.00 1.60 1.97 0.65 1.87 1.85 0.78 2.15 2.33 1.99 2.70 2.41 3.30 1.09 0.69 0.00 2.86 0.78 1.04 1.79 3.70 1.20 1.38 1.23 1.49 1.37 2.73 1.37 1.10 0.70 10.00 1.64 0.00 0.72 1.23 0.00 1.95 0.00 0.00 1.95 1.83 1.56 1.40 0.89 1.22 1.10 4.76 1.28 1.57 0.00 0.69 0.00 1.42 K intron_retention CG2765,RI_chr2R_20849027_20852094,I_chr2R_20849271_20849626,I_chr2R_20849271_20850005,E_chr2R_20849271_20850693,E_chr2R_20849271_20851166,E_chr2R_20849271_20852090,E_chr2R_20851190_20852094 chr2R - chr2R_20849271_20852094 chr2R_20849270_20849271;chr2R_20852094_20852095 chr2R_20849171_20849270;chr2R_20852095_20852190 10.04 9.68 18.59 4.82 10.00 16.82 7.28 5.77 10.15 7.59 6.14 11.67 10.56 13.88 9.78 11.99 11.76 8.91 12.55 10.36 10.04 14.75 11.71 7.42 16.25 16.11 12.54 9.77 8.18 8.97 14.41 5.30 12.76 12.40 22.14 10.07 5.94 8.76 6.30 13.55 8.82 13.42 12.07 7.79 2.25 5.91 4.57 13.21 10.09 7.06 13.31 14.18 9.46 6.09 12.45 4.97 4.69 3.97 K intron_retention Aats-cys chr2R + chr2R_12030920_12030986 chr2R_12030919_12030920;chr2R_12030986_12030987 chr2R_12030648_12030919;chr2R_12030987_12031476 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rab30,I_chr2L_7032178_7032236 chr2L - chr2L_7032178_7032321 chr2L_7032177_7032178;chr2L_7032321_7032322 chr2L_7032078_7032177;chr2L_7032322_7032336 16.03 NA NA 16.67 NA NA 20.00 7.14 18.75 NA NA 12.50 NA NA NA NA NA NA NA 15.38 NA NA 25.00 NA NA NA NA NA 20.00 NA NA NA NA 14.29 NA NA NA NA NA 12.50 23.08 21.43 NA NA NA 5.88 NA 12.50 20.00 NA 13.33 NA NA NA NA NA NA NA K intron_retention wts chr3R - chr3R_26617863_26617930 chr3R_26617862_26617863;chr3R_26617930_26617931 chr3R_26617742_26617862;chr3R_26617931_26620211 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 3.17 2.94 3.17 0.00 0.00 0.00 0.00 0.00 0.00 1.82 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD tud,I_chr2R_17086183_17086333 chr2R + chr2R_17072524_17072579 chr2R_17072527_17072579 chr2R_17072580_17073413;chr2R_17072023_17072523 98.68 100.00 96.65 98.46 98.83 99.37 97.26 98.37 98.42 98.98 98.68 98.49 99.37 98.88 99.04 98.22 97.69 97.55 99.34 98.03 99.40 99.25 96.99 98.80 98.77 98.09 98.03 96.35 99.46 98.45 99.47 95.12 100.00 98.05 99.32 99.52 100.00 99.16 98.36 98.82 100.00 96.72 98.55 97.59 100.00 98.73 97.92 99.51 99.69 97.83 99.52 100.00 98.25 98.04 98.39 98.04 97.50 100.00 K intron_retention lola,I_chr2R_6419625_6419686,I_chr2R_6420999_6421080,E_chr2R_6421101_6421237,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6421017_6421080 chr2R_6421016_6421017;chr2R_6421080_6421081 chr2R_6421001_6421016;chr2R_6421081_6421100 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA oho23B,I_chr2L_2856176_2856244,I_chr2L_2856573_2856630,RI_chr2L_2856673_2856772 chr2L + chr2L_2856306_2856391 chr2L_2856306_2856376 chr2L_2856279_2856305;chr2L_2856392_2856568 99.99 100.00 100.00 99.99 99.98 99.97 100.00 100.00 100.00 99.98 100.00 99.99 100.00 100.00 99.99 99.97 99.98 99.99 99.98 99.99 100.00 99.96 99.99 99.99 99.96 100.00 99.98 84.86 100.00 99.99 99.99 100.00 99.99 100.00 99.98 100.00 99.98 99.99 99.99 99.99 99.99 99.99 99.98 99.99 99.98 99.99 99.99 100.00 99.99 99.99 99.98 99.96 100.00 99.99 99.99 99.99 100.00 99.99 K jcn_only_AD RI_chrX_1796525_1796585,mip130,CG3573,I_chrX_1820956_1821011,CG11596 chrX + chrX_1820952_1821011 chrX_1820956_1821011 chrX_1821012_1821111;chrX_1820856_1820951 1.83 1.98 2.00 0.00 2.78 1.53 2.86 1.21 2.11 2.08 1.12 1.83 0.00 0.00 3.80 0.79 1.09 0.72 2.40 2.42 3.92 0.31 0.79 2.38 2.50 3.57 1.55 4.46 3.04 1.95 1.99 1.89 2.19 2.76 0.90 3.03 1.44 1.65 2.64 1.73 1.62 1.68 1.85 3.03 1.12 2.36 1.07 2.81 0.79 4.57 3.32 1.27 0.00 1.68 1.44 0.87 1.64 1.41 K alternative_donor F_chr2L_5045484_5046146,CG14040,His3_3A chr2L + chr2L_5052994_5053238 chr2L_5053169_5053238 chr2L_5053239_5053356;chr2L_5052846_5052993 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 K mutually_exclusive pan chr4 + chr4_115242_118447,chr4_118602_120031 chr4_115242_115462,chr4_115629_120031 chr4_118448_118601 chr4_115463_115628 chr4_115049_115241;chr4_120032_120101 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD REI_chr3L_3042451_3043440,Jafrac2,I_chr3L_3042851_3043044,I_chr3L_3043202_3043271 chr3L + chr3L_3043202_3043271 chr3L_3043206_3043271 chr3L_3043272_3043339;chr3L_3043138_3043201 100.00 99.50 100.00 99.30 100.00 100.00 100.00 100.00 100.00 98.88 100.00 100.00 100.00 100.00 99.01 100.00 98.81 99.07 100.00 100.00 100.00 100.00 100.00 100.00 98.99 100.00 100.00 99.18 98.68 100.00 97.75 99.12 100.00 100.00 100.00 100.00 100.00 100.00 98.86 100.00 97.33 99.23 100.00 100.00 100.00 99.40 99.01 100.00 100.00 99.54 99.38 99.13 100.00 98.96 100.00 99.11 99.46 100.00 K jcn_only_AA CG1265,I_chr3L_4255296_4255550 chr3L + chr3L_4255296_4255353;chr3L_4255296_4255609;chr3L_4255296_4255457 chr3L_4255296_4255550 chr3L_4255196_4255295;chr3L_4255610_4255650 4.13 4.76 4.71 5.88 3.64 1.61 10.00 1.89 4.90 8.51 5.77 4.13 14.00 7.55 10.77 8.00 1.72 4.11 6.15 3.74 3.17 3.75 2.27 3.64 1.85 13.11 2.25 2.94 5.00 1.96 6.94 0.00 8.57 5.56 9.09 0.00 6.36 4.76 4.55 4.12 0.00 2.84 0.00 2.02 0.00 4.59 2.41 4.17 8.47 2.50 4.65 4.17 1.72 1.37 9.09 0.00 4.27 1.52 K intron_retention CG31150,Hmt-1 chr3R - chr3R_11674567_11674621 chr3R_11674566_11674567;chr3R_11674621_11674622 chr3R_11674440_11674566;chr3R_11674622_11674737 0.60 0.97 0.00 1.54 0.00 0.00 0.00 0.31 0.91 0.93 0.00 0.55 0.00 0.00 1.22 1.03 0.61 0.00 0.43 0.90 1.06 4.17 0.66 0.00 0.00 2.52 0.85 0.00 1.43 1.49 0.88 0.45 0.00 1.15 0.75 2.88 0.45 0.68 0.00 0.67 3.74 1.01 0.00 0.60 0.00 0.31 0.00 1.02 0.00 0.72 0.74 0.00 0.00 0.66 0.86 0.00 0.00 0.00 K intron_retention CG4589,I_chr2R_20402394_20402462,I_chr2R_20402394_20402706 chr2R - chr2R_20402394_20402753 chr2R_20402393_20402394;chr2R_20402753_20402754 chr2R_20402294_20402393;chr2R_20402754_20402806 2.27 NA 0.00 6.67 NA 0.00 10.00 1.82 9.76 NA 0.00 2.50 5.00 0.00 4.17 2.27 6.67 NA 0.00 0.00 0.00 20.00 NA NA NA 11.11 NA NA 12.50 NA 0.00 NA 13.64 3.85 NA NA NA NA NA 6.67 NA 7.50 0.00 NA 0.00 6.67 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention CG12112,CG12111 chrX - chrX_8453397_8453458 chrX_8453396_8453397;chrX_8453458_8453459 chrX_8452954_8453396;chrX_8453459_8453612 0.00 0.00 1.54 4.58 0.00 0.00 0.49 0.00 0.72 0.00 0.00 0.00 0.00 1.54 1.79 0.94 1.20 0.00 3.12 0.00 0.00 0.81 0.00 0.00 3.28 2.04 2.04 1.32 4.27 0.00 0.00 1.37 0.00 1.02 0.00 1.89 0.00 0.00 0.00 0.53 0.91 0.83 0.00 0.00 1.81 0.87 0.00 0.34 0.82 1.39 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.58 K alternative_donor eIF-1A,I_chr3R_14106104_14107415,I_chr3R_14106955_14107415 chr3R + chr3R_14106104_14107415;chr3R_14106955_14107415 chr3R_14100864_14107415 chr3R_14107416_14107515;chr3R_14100759_14100863 100.00 100.00 99.78 99.44 100.00 100.00 99.68 99.89 99.78 100.00 99.75 99.77 99.77 99.75 99.81 99.65 100.00 100.00 99.80 99.78 100.00 100.00 99.77 100.00 100.00 99.78 99.78 99.26 100.00 100.00 100.00 100.00 100.00 99.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.77 100.00 100.00 100.00 100.00 100.00 100.00 99.75 100.00 100.00 100.00 100.00 100.00 99.83 100.00 100.00 100.00 N jcn_only_AD CG16971,CG33229,I_chr3L_225856_225909,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_224184_224972;chr3L_224779_224972 chr3L_224886_224972 chr3L_224973_225140;chr3L_224174_224183 0.00 5.09 0.00 0.00 0.00 0.00 2.77 0.00 1.74 2.57 3.26 1.55 0.00 2.53 0.00 3.19 0.00 0.00 1.65 1.06 0.00 4.48 0.00 0.00 7.69 7.46 21.43 13.75 6.45 0.00 0.00 0.00 2.29 1.32 0.00 0.00 3.34 0.00 0.00 4.76 7.46 2.19 2.53 0.00 0.00 0.00 0.00 2.16 1.78 0.00 7.69 0.00 0.00 NA 0.00 0.00 0.00 2.62 K jcn_only_AD CG31716,I_chr2L_10397648_10398034 chr2L + chr2L_10399689_10399767;chr2L_10399713_10399767 chr2L_10399677_10399767 chr2L_10399768_10400679;chr2L_10399595_10399676 17.50 17.31 13.04 19.63 22.33 16.98 13.61 12.82 17.04 14.29 18.33 19.03 10.85 14.71 29.23 20.45 13.40 13.51 11.51 17.09 20.37 11.43 18.57 17.69 14.44 11.50 21.55 18.18 10.23 14.91 20.25 15.66 31.16 19.67 15.73 27.72 16.05 25.27 20.38 19.68 22.73 19.67 17.89 17.36 16.67 18.05 NA 15.92 19.27 17.89 17.73 27.85 17.65 16.42 15.50 18.95 9.89 15.84 K intron_retention CG42348,I_chr3L_20149990_20151579 chr3L - chr3L_20144991_20146263 chr3L_20144990_20144991;chr3L_20146263_20146264 chr3L_20144003_20144990;chr3L_20146264_20146435 70.00 77.42 55.56 72.22 73.53 62.96 78.57 73.91 81.97 52.17 77.27 82.50 90.00 77.78 69.23 66.67 60.00 66.67 83.33 63.41 69.57 84.31 41.77 58.82 73.91 87.50 60.78 71.43 65.38 72.41 66.67 70.00 68.89 70.49 53.33 70.37 61.84 70.00 73.08 70.67 65.91 79.31 60.87 71.88 74.67 57.35 54.76 70.00 71.62 78.26 59.68 62.07 32.61 62.16 71.88 75.00 44.29 54.17 K intron_retention CG32407 chr3L + chr3L_5915834_5915906 chr3L_5915833_5915834;chr3L_5915906_5915907 chr3L_5915580_5915833;chr3L_5915907_5916392 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 NA 0.00 4.17 0.00 0.00 0.00 5.56 0.00 0.00 4.76 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.12 0.00 0.00 0.00 0.00 2.86 NA 6.90 4.76 0.00 3.39 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 K intron_retention aux chr3R + chr3R_50731_50787 chr3R_50730_50731;chr3R_50787_50788 chr3R_50393_50730;chr3R_50788_51161 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.80 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 3.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette sgg,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2564291_2565340 chrX_2564291_2565153;chrX_2565265_2565340 chrX_2565154_2565264 chrX_2564207_2564290;chrX_2565341_2565578 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 98.67 98.51 100.00 97.87 100.00 94.64 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 98.04 100.00 96.15 100.00 99.11 100.00 100.00 98.04 100.00 96.97 100.00 100.00 98.90 100.00 98.59 100.00 98.11 100.00 98.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 K intron_retention CG4662 chr3R + chr3R_15675876_15675930 chr3R_15675875_15675876;chr3R_15675930_15675931 chr3R_15675734_15675875;chr3R_15675931_15676041 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5380 chr3R - chr3R_18192426_18192483 chr3R_18192425_18192426;chr3R_18192483_18192484 chr3R_18191802_18192425;chr3R_18192484_18192869 0.00 NA NA 0.00 NA NA 8.00 8.33 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 0.00 4.35 NA NA NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 6.25 9.09 4.35 NA 0.00 NA NA 0.00 0.00 0.00 K intron_retention NTPase chr2L - chr2L_2882512_2882691 chr2L_2882511_2882512;chr2L_2882691_2882692 chr2L_2881382_2882511;chr2L_2882692_2882833 2.33 1.91 2.69 5.64 2.76 2.17 3.36 2.83 1.40 3.75 0.00 1.81 3.67 3.91 1.97 1.20 2.21 3.47 2.61 2.08 1.40 4.07 2.56 1.69 2.99 2.70 4.17 7.17 6.86 2.92 1.36 1.74 1.72 1.93 2.59 2.79 1.72 2.62 1.71 2.20 3.85 1.33 0.84 3.59 1.83 3.37 2.11 2.17 2.03 1.76 3.98 1.45 2.33 3.50 2.99 0.64 3.45 0.00 K intron_retention CG9947,eIF-2alpha chrX - chrX_16333320_16333456 chrX_16333319_16333320;chrX_16333456_16333457 chrX_16333264_16333319;chrX_16333457_16333547 29.41 35.71 46.15 NA NA 36.36 35.71 15.38 34.78 NA NA 32.14 31.25 46.15 NA 17.39 40.00 NA 21.43 23.53 NA 12.50 30.77 31.58 NA NA 35.71 21.43 NA 10.00 28.57 NA 25.00 38.89 NA NA 23.08 25.00 29.41 20.00 NA 26.09 NA 17.86 8.70 25.00 33.33 NA 50.00 23.08 40.00 NA NA NA NA 43.75 NA NA K alternative_donor Spase25,I_chrX_11379530_11379593 chrX + chrX_11379465_11379593 chrX_11379530_11379593 chrX_11379594_11379693;chrX_11379430_11379464 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.64 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.23 0.00 0.61 0.00 0.78 1.15 0.00 0.00 0.00 0.56 0.00 0.44 0.36 0.51 0.35 0.87 0.00 1.03 0.00 0.00 0.34 0.45 0.32 0.00 0.00 0.34 0.00 0.00 0.24 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpS12,I_chr3L_13016626_13017469,snoRNA:Me28S-A774a chr3L + chr3L_13016967_13017469 chr3L_13016966_13016967;chr3L_13017469_13017470 chr3L_13016832_13016966;chr3L_13017470_13017569 0.00 0.00 0.00 0.02 0.00 0.04 0.05 0.00 0.00 0.00 0.06 0.00 0.04 0.00 0.00 0.00 0.07 0.00 0.00 0.03 0.00 0.00 0.01 0.00 0.03 0.00 0.09 0.07 0.00 0.00 0.00 0.00 0.03 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 K intron_retention Rab35 chrX - chrX_20051870_20052002 chrX_20051869_20051870;chrX_20052002_20052003 chrX_20051145_20051869;chrX_20052003_20052302 0.00 0.00 0.00 2.96 0.00 0.00 0.00 0.52 0.38 0.00 0.00 1.17 2.35 0.00 1.43 0.00 0.00 0.85 0.00 0.83 0.00 1.07 0.00 0.00 0.00 0.00 0.65 4.48 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 1.32 0.00 0.00 1.31 0.00 0.71 0.00 0.00 1.20 0.00 1.40 1.06 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 K intron_retention SdhC,CG6672 chr3R - chr3R_7035463_7035519 chr3R_7035462_7035463;chr3R_7035519_7035520 chr3R_7034726_7035462;chr3R_7035520_7035588 0.00 0.00 0.00 1.87 0.00 0.00 2.15 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 6.67 4.65 0.00 2.11 11.11 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 2.13 0.00 1.72 0.00 0.00 4.76 0.00 0.00 NA 0.00 2.27 0.00 0.00 K intron_retention CG10254 chr3R - chr3R_19518083_19518139 chr3R_19518082_19518083;chr3R_19518139_19518140 chr3R_19517793_19518082;chr3R_19518140_19518534 50.00 53.85 33.33 80.00 46.67 NA 35.29 65.00 45.00 NA NA 50.00 NA 41.67 53.33 69.23 60.00 50.00 35.71 26.09 NA NA 58.82 61.54 41.67 50.00 69.23 NA NA NA 53.85 NA 38.46 84.62 40.00 70.00 37.50 NA 50.00 35.00 NA 40.74 NA 50.00 NA NA NA NA 46.15 NA 38.46 NA NA NA 57.14 NA NA 54.55 K jcn_only_AD CG7484,RI_chr3L_17647825_17647881,RI_chr3L_17647827_17648317 chr3L + chr3L_17647825_17647881 chr3L_17647827_17647881 chr3L_17647882_17647981;chr3L_17647729_17647824 100.00 100.00 98.57 100.00 98.82 100.00 100.00 100.00 99.61 97.73 100.00 100.00 100.00 100.00 100.00 100.00 99.01 100.00 100.00 98.18 98.46 100.00 98.21 99.11 100.00 98.78 98.82 100.00 98.48 100.00 100.00 100.00 100.00 96.23 98.33 100.00 98.95 98.86 99.24 99.10 100.00 99.40 98.44 100.00 97.67 98.20 99.03 100.00 100.00 100.00 99.42 98.92 100.00 100.00 100.00 99.35 99.37 98.11 K alternative_donor CG13923,CG12022 chr3L + chr3L_1803324_1803432 chr3L_1803328_1803432 chr3L_1803433_1803567;chr3L_1803322_1803323 100.00 100.00 NA 100.00 NA 100.00 91.67 100.00 94.74 NA NA 93.33 NA 100.00 88.89 NA NA NA 100.00 91.67 NA NA 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 88.89 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 94.44 NA 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 93.33 100.00 95.00 K intron_retention CG11158 chrX + chrX_13577222_13577278 chrX_13577221_13577222;chrX_13577278_13577279 chrX_13576958_13577221;chrX_13577279_13577374 29.29 18.75 25.00 53.85 35.71 40.00 33.33 28.57 16.67 30.77 25.00 31.82 NA 50.00 25.00 25.00 25.00 25.00 36.36 33.33 NA 27.27 33.33 17.39 NA NA 38.46 30.00 30.43 NA 51.85 NA 19.05 26.32 NA NA 16.67 25.93 32.00 43.48 NA 23.08 NA 11.11 22.22 25.00 17.65 NA 38.46 33.33 54.55 NA 50.00 NA 42.86 22.73 26.67 40.00 K jcn_only_AD alt,I_chr3R_13503901_13504925,RI_chr3R_13503901_13505368,I_chr3R_13503901_13507824 chr3R - chr3R_13503901_13508178;chr3R_13503901_13508123;chr3R_13503901_13508180 chr3R_13503901_13507816 chr3R_13503801_13503900;chr3R_13508181_13508234 1.92 2.08 1.14 1.73 1.45 1.37 4.40 2.20 1.62 NA 0.00 1.49 1.75 1.32 1.06 6.14 1.52 0.00 7.06 4.23 0.00 0.00 0.00 3.85 0.00 0.96 0.00 8.70 NA 15.38 7.02 NA 20.69 4.26 NA NA 0.00 0.00 7.69 5.13 NA 3.45 1.35 9.09 3.85 NA NA NA 4.69 3.33 4.35 4.17 15.00 NA 1.06 NA 0.00 29.03 N alternative_acceptor CG8108,EI_chr3L_9859462_9859590 chr3L + chr3L_9859462_9860377;chr3L_9859462_9860413 chr3L_9859462_9859590 chr3L_9859414_9859461;chr3L_9860414_9860844 18.75 13.54 22.58 37.33 18.03 16.95 38.96 28.09 19.67 19.57 16.13 17.56 28.00 21.67 14.77 43.33 21.67 11.76 25.00 25.66 17.74 18.92 17.14 14.74 18.06 22.22 22.92 22.81 19.35 20.90 53.49 18.42 14.86 26.37 17.14 18.75 12.32 12.12 8.28 23.66 16.13 20.90 18.97 27.27 11.76 18.18 17.20 20.41 22.61 17.14 17.32 20.37 8.33 8.64 20.83 10.59 9.26 14.29 K jcn_only_AA Pur-alpha,I_chr4_581447_585166 chr4 + chr4_578927_580723 chr4_578927_580720 chr4_578907_578926;chr4_580724_580926 96.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_donor CG17760 chr2R + chr2R_8513482_8514257;chr2R_8513731_8514257 chr2R_8513642_8514257 chr2R_8514258_8514421;chr2R_8513465_8513481 85.71 90.91 83.33 75.00 NA 77.78 72.00 87.80 90.14 NA 100.00 88.89 75.00 90.00 100.00 85.45 87.50 75.00 82.35 90.00 85.71 100.00 82.35 87.50 80.00 83.33 80.00 NA NA 85.71 83.33 NA 80.00 72.97 91.67 90.00 100.00 75.00 NA 83.33 100.00 84.62 94.12 100.00 NA 84.62 100.00 66.67 82.93 81.82 86.67 90.00 NA NA 92.86 88.89 100.00 80.00 K intron_retention CG6293,Bruce chr3R - chr3R_6136241_6137183 chr3R_6136240_6136241;chr3R_6137183_6137184 chr3R_6135621_6136240;chr3R_6137184_6137328 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.22 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.27 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16107821_16107893 chr3L_16107820_16107821;chr3L_16107893_16107894 chr3L_16107721_16107820;chr3L_16107894_16107943 100.00 NA 100.00 NA NA NA 100.00 NA 100.00 95.00 100.00 94.87 NA NA NA NA NA NA NA 100.00 92.31 100.00 100.00 100.00 100.00 100.00 90.00 91.67 100.00 100.00 NA 100.00 96.55 100.00 88.89 100.00 100.00 100.00 93.33 100.00 90.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 K intron_retention mthl4 chr2R - chr2R_13333425_13333481 chr2R_13333424_13333425;chr2R_13333481_13333482 chr2R_13333256_13333424;chr2R_13333482_13333736 0.00 0.00 0.00 7.50 0.00 0.00 0.00 3.28 2.11 NA 0.00 4.17 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 3.85 0.00 6.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.00 0.00 0.93 0.00 K intron_retention Rbf chrX - chrX_693047_693348 chrX_693046_693047;chrX_693348_693349 chrX_692311_693046;chrX_693349_693680 0.00 0.00 0.00 3.23 4.00 0.00 5.26 0.00 0.00 0.00 NA 2.27 0.00 0.00 0.00 0.00 0.00 10.53 0.00 0.00 NA 9.30 3.17 4.35 0.00 0.00 2.08 NA 0.00 0.00 10.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 NA 2.13 0.00 3.85 0.00 7.41 0.00 NA 0.00 2.04 2.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Flo,I_chr2R_11456012_11456623 chr2R - chr2R_11456012_11456623 chr2R_11456012_11456255;chr2R_11456332_11456623 chr2R_11456256_11456331 chr2R_11455912_11456011;chr2R_11456624_11456723 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K multi_cassette CG14995,I_chr3L_4095875_4097205,I_chr3L_4096047_4096903 chr3L - chr3L_4096068_4097506 chr3L_4096068_4096903;chr3L_4096979_4097205;chr3L_4097335_4097506 chr3L_4096904_4096978;chr3L_4097206_4097334 chr3L_4095972_4096067;chr3L_4097507_4097804 100.00 100.00 NA NA NA NA NA NA 100.00 NA NA 88.89 NA NA NA NA NA NA NA 100.00 NA 83.33 NA NA NA NA 100.00 NA 83.33 NA 75.00 83.33 83.33 NA 100.00 100.00 100.00 100.00 80.00 100.00 NA NA NA 100.00 100.00 NA 80.00 NA 80.00 100.00 85.71 NA NA 100.00 NA 100.00 NA 100.00 K alternative_donor CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3071298_3073080;chr3L_3071308_3073080 chr3L_3071190_3073080 chr3L_3073081_3073149;chr3L_3071183_3071189 79.66 NA 80.00 81.82 NA NA 75.00 73.33 NA NA NA 75.00 87.50 NA 72.73 79.31 NA NA NA 86.67 NA NA NA NA NA NA NA NA NA NA 63.64 NA NA 88.24 NA NA NA NA NA 62.50 NA 80.00 NA NA NA NA NA NA 86.21 NA NA NA NA NA NA NA NA NA K intron_retention RpL34b,CG9356 chr3R - chr3R_5226601_5226663 chr3R_5226600_5226601;chr3R_5226663_5226664 chr3R_5225976_5226600;chr3R_5226664_5226744 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.09 0.00 0.03 0.00 0.00 0.06 0.03 0.05 0.00 0.00 0.07 0.09 0.00 0.00 0.04 0.03 0.06 0.09 0.25 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.04 0.04 0.08 0.00 0.00 0.00 0.05 0.09 0.00 0.05 0.13 0.09 0.02 0.00 0.00 0.03 0.06 0.00 0.00 0.05 K alternative_donor CG4433,I_chr3R_15845478_15846094 chr3R - chr3R_15845478_15846069;chr3R_15845478_15846006 chr3R_15845478_15846094 chr3R_15845378_15845477;chr3R_15846095_15846194 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 1.28 0.00 1.14 0.00 0.00 1.69 2.50 0.00 0.00 0.00 2.59 2.22 0.00 0.00 0.00 0.00 0.00 1.30 1.61 0.00 0.00 1.75 0.00 1.82 0.00 0.00 2.27 0.79 1.22 0.91 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 2.04 1.96 0.00 0.00 0.00 1.64 0.00 K alternative_acceptor klett chrX - chrX_21499737_21501093 chrX_21500597_21501093 chrX_21501094_21501123;chrX_21499389_21499736 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 97.67 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 98.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Gprk2 chr3R + chr3R_27280487_27280928 chr3R_27280486_27280487;chr3R_27280928_27280929 chr3R_27280297_27280486;chr3R_27280929_27281177 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 6.90 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K alternative_donor RI_chr3L_707623_707678,CkIIalpha-i3,CG13896,RI_chr3L_711692_711744 chr3L - chr3L_711688_711746 chr3L_711688_711744 chr3L_711592_711687;chr3L_711747_711763 100.00 NA NA NA NA NA 88.89 100.00 91.67 NA NA NA 88.89 NA NA NA NA 100.00 90.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention CG10153,RI_chr2R_10644944_10645110 chr2R - chr2R_10645056_10645110 chr2R_10645055_10645056;chr2R_10645110_10645111 chr2R_10645004_10645055;chr2R_10645111_10645175 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5794,I_chr3R_20475643_20475715 chr3R - chr3R_20475643_20475715 chr3R_20475642_20475643;chr3R_20475715_20475716 chr3R_20475543_20475642;chr3R_20475716_20475736 64.29 NA NA 91.67 NA NA 66.67 64.29 62.50 NA NA 56.25 NA NA NA 75.00 77.78 NA NA 54.55 NA 48.00 66.67 60.00 NA NA 63.64 87.50 75.00 76.92 53.85 NA 100.00 69.23 NA 84.62 61.11 NA NA 62.50 NA 43.75 54.55 63.64 NA NA NA 65.00 50.00 NA NA NA NA NA 66.67 NA NA NA N jcn_only_AA Trc8 chr3R - chr3R_25326236_25326440;chr3R_25326221_25326440 chr3R_25325222_25326440 chr3R_25326441_25326615 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA fal,I_chr3L_19289660_19290145 chr3L + chr3L_19290313_19290378 chr3L_19290313_19290376 chr3L_19290146_19290312;chr3L_19290379_19290548 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.42 100.00 100.00 99.08 98.18 100.00 100.00 98.55 100.00 100.00 98.08 100.00 98.25 100.00 100.00 98.77 98.31 98.08 96.55 100.00 97.87 100.00 98.55 100.00 100.00 100.00 100.00 100.00 97.85 100.00 96.55 100.00 100.00 99.22 100.00 100.00 100.00 100.00 97.44 98.33 100.00 100.00 98.72 100.00 100.00 100.00 98.90 100.00 98.46 100.00 K alternative_donor RpL28,RI_chr3L_3221710_3221877,I_chr3L_3221982_3222744,snoRNA:Or-CD11c,snoRNA:Or-CD11b,snoRNA:Or-CD11a,I_chr3L_3222575_3222787 chr3L - chr3L_3221982_3222787;chr3L_3221982_3222152;chr3L_3221982_3222574;chr3L_3221982_3222926;chr3L_3221982_3222365 chr3L_3221982_3222847 chr3L_3221882_3221981;chr3L_3222927_3222958 1.64 3.23 0.63 0.28 0.97 0.44 2.05 0.53 2.44 3.30 1.17 2.11 1.64 1.96 0.39 2.24 0.99 0.93 0.44 0.85 0.66 4.38 4.41 7.94 7.89 0.56 9.52 4.35 3.42 0.86 0.97 0.23 0.22 0.39 5.56 3.53 10.20 9.76 4.17 0.90 1.03 0.42 0.00 2.56 0.31 1.03 6.00 0.29 0.51 7.69 7.14 2.27 1.76 7.89 0.65 7.14 5.88 0.21 K intron_retention glo,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7642267_7642333 chr3R_7642266_7642267;chr3R_7642333_7642334 chr3R_7641563_7642266;chr3R_7642334_7642479 0.00 0.00 2.25 0.00 1.59 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 2.70 1.06 1.14 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 4.46 2.44 0.00 0.00 1.64 0.00 0.62 0.00 0.00 3.49 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.94 0.00 0.00 0.00 K intron_retention Galpha49B,I_chr2R_8501587_8501648,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500357_8503411 chr2R_8500356_8500357;chr2R_8503411_8503412 chr2R_8500333_8500356;chr2R_8503412_8503586 26.19 12.50 38.10 22.22 30.43 23.81 25.00 27.78 25.68 NA 34.62 50.00 29.17 36.84 36.00 31.03 54.55 52.63 35.00 26.19 39.13 NA 21.88 30.00 35.00 33.33 12.50 15.79 40.00 20.00 43.48 NA 23.08 28.26 NA 36.36 17.65 25.00 22.22 12.50 NA 31.43 36.84 13.51 NA 0.00 NA 13.33 24.32 17.65 20.00 35.71 NA NA 25.81 23.53 14.29 NA K intron_retention R_chr2R_8737740_8756454,noncoding_6418 chr2R + chr2R_8756513_8756728 chr2R_8756512_8756513;chr2R_8756728_8756729 chr2R_8756463_8756512;chr2R_8756729_8756815 98.00 100.00 98.31 100.00 100.00 98.18 98.13 99.10 99.22 98.00 97.37 99.02 100.00 98.33 98.41 100.00 98.04 97.44 98.55 97.09 97.78 100.00 92.54 98.68 97.73 100.00 98.36 92.31 98.11 100.00 98.44 97.37 100.00 95.74 97.83 97.83 96.55 94.23 98.28 97.78 97.87 97.09 100.00 92.31 97.78 96.30 95.00 97.44 96.33 92.00 95.95 97.92 97.73 97.92 98.67 94.44 98.75 98.21 K alternative_last_exon CG4351,CG12714 chrX - chrX_12995575_13005666 chrX_13005447_13005666 chrX_12994918_12995574 chrX_13005393_13005446 chrX_13005667_13006288 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 2.22 0.00 0.00 3.03 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 3.03 3.57 0.00 0.00 3.70 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 K jcn_only_AD CG6597 chr3L + chr3L_20295938_20296166;chr3L_20295603_20296166 chr3L_20295972_20296166 chr3L_20296167_20296215;chr3L_20295573_20295602 0.00 NA NA 0.00 0.00 NA 0.00 0.00 1.75 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 2.22 4.76 8.33 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 3.03 0.00 0.00 0.00 NA NA 0.00 2.08 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention Rap2l chr2R + chr2R_19952634_19952705 chr2R_19952633_19952634;chr2R_19952705_19952706 chr2R_19952516_19952633;chr2R_19952706_19952928 2.96 0.00 5.06 4.07 0.00 4.84 1.80 3.28 6.14 0.00 0.00 1.48 0.00 2.90 2.63 2.50 4.92 1.39 1.96 3.02 2.22 0.00 1.69 3.51 5.06 2.60 4.71 8.89 27.69 1.49 2.94 3.23 3.08 2.96 5.63 1.47 9.52 0.00 3.96 3.10 2.04 1.57 6.25 9.23 4.48 3.95 3.25 3.75 2.52 4.30 2.83 3.28 1.02 1.75 4.76 3.57 1.92 0.88 K intron_retention I_chr2L_8029734_8029787,Cka,CG7429 chr2L + chr2L_8036299_8036381 chr2L_8036298_8036299;chr2L_8036381_8036382 chr2L_8035821_8036298;chr2L_8036382_8036576 7.95 8.79 5.47 12.82 4.72 11.93 3.95 7.74 6.33 6.67 6.03 8.93 8.70 9.30 10.20 10.00 6.52 6.52 9.57 6.15 6.90 8.74 5.21 11.82 10.96 8.74 17.65 10.45 6.25 5.92 8.13 5.38 2.99 7.36 6.14 3.07 8.75 8.57 9.93 5.32 5.69 7.95 8.08 4.72 7.41 8.20 7.41 7.83 12.44 8.57 10.00 11.86 8.54 3.49 10.94 6.76 12.50 7.25 K jcn_only_AD alc chr2R - chr2R_5023211_5023269 chr2R_5023211_5023265 chr2R_5023142_5023210;chr2R_5023270_5023364 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.91 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 K intron_retention Axn,I_chr3R_25849563_25849626 chr3R + chr3R_25859466_25859526 chr3R_25859465_25859466;chr3R_25859526_25859527 chr3R_25859321_25859465;chr3R_25859527_25859847 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 1.72 0.00 0.00 0.00 0.00 5.56 NA 0.00 0.00 3.85 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N cassette CG42574,I_chr3R_618802_618939,I_chr3R_621543_625413,I_chr3R_621546_625413 chr3R - chr3R_620787_625413;chr3R_620787_622210 chr3R_620787_621458;chr3R_621546_625413,chr3R_621546_622210 chr3R_621459_621545 chr3R_618940_620786;chr3R_625414_625513 29.03 33.33 17.78 52.94 23.53 17.65 22.47 30.30 30.69 27.08 21.21 57.53 7.14 33.33 36.11 35.90 29.03 32.00 20.00 53.19 22.86 32.14 30.16 41.07 35.85 19.61 26.47 29.66 22.09 26.03 33.90 22.22 20.39 32.43 27.12 42.67 29.91 27.12 26.74 33.77 16.67 29.55 27.27 24.53 42.11 32.00 25.00 28.17 36.84 28.57 26.03 20.00 41.67 33.33 26.83 35.00 33.33 27.78 K intron_retention Hsp60 chrX + chrX_11005812_11005829 chrX_11005811_11005812;chrX_11005829_11005830 chrX_11005508_11005811;chrX_11005830_11006341 100.00 99.83 100.00 100.00 99.61 100.00 100.00 100.00 100.00 99.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.83 100.00 100.00 99.85 99.55 100.00 100.00 99.79 99.85 100.00 99.71 100.00 99.73 99.76 100.00 99.69 100.00 99.59 99.86 100.00 100.00 100.00 99.82 100.00 100.00 99.84 100.00 99.82 100.00 99.77 99.71 99.81 99.67 100.00 99.85 100.00 99.85 99.85 99.64 K intron_retention Vps33B,RI_chr3R_21301568_21301702,I_chr3R_21310025_21310086 chr3R + chr3R_21299451_21299507 chr3R_21299450_21299451;chr3R_21299507_21299508 chr3R_21299350_21299450;chr3R_21299508_21299826 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 5.13 0.00 0.00 0.00 0.00 NA 0.00 5.56 0.00 0.00 6.67 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 K jcn_only_AA RpS16,RI_chr2R_18493796_18494013,I_chr2R_18494146_18494441,snoRNA:Me28S-G2173 chr2R + chr2R_18494146_18494441 chr2R_18494146_18494438 chr2R_18494046_18494145;chr2R_18494442_18494541 99.99 99.99 99.99 99.99 99.99 100.00 100.00 100.00 100.00 100.00 100.00 99.99 100.00 100.00 100.00 99.99 100.00 100.00 99.98 99.99 99.98 99.97 100.00 100.00 100.00 99.98 99.98 99.95 100.00 100.00 100.00 99.98 100.00 99.99 100.00 100.00 99.99 99.99 99.99 99.96 100.00 99.97 99.98 99.99 100.00 100.00 99.99 100.00 100.00 99.99 100.00 100.00 99.99 99.98 100.00 99.98 99.99 99.98 K intron_retention I_chr3R_11826508_11826910,GATAe chr3R + chr3R_11842288_11842430 chr3R_11842287_11842288;chr3R_11842430_11842431 chr3R_11841950_11842287;chr3R_11842431_11843364 88.89 81.25 NA 70.00 NA NA 91.67 92.31 95.83 NA NA 90.00 100.00 100.00 NA 100.00 NA 88.89 90.91 82.35 NA 76.92 87.50 NA NA 88.89 NA NA NA NA NA NA NA 91.67 NA NA NA NA 88.89 NA NA 94.74 NA 88.89 NA NA NA NA 86.67 NA 90.91 88.89 NA NA 88.89 NA NA NA K intron_retention CG14253 chr3R + chr3R_22810359_22810426 chr3R_22810358_22810359;chr3R_22810426_22810427 chr3R_22810217_22810358;chr3R_22810427_22811124 0.00 0.00 0.00 0.25 0.00 0.00 0.13 0.41 0.00 0.00 0.00 0.13 0.00 0.00 0.17 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 2.04 0.45 0.00 0.00 0.00 0.00 0.00 0.43 1.27 0.19 0.00 0.00 0.22 1.66 0.00 0.00 0.00 1.21 0.56 0.28 0.42 0.00 0.59 0.37 0.00 0.00 0.00 0.00 0.00 0.35 2.28 K intron_retention tsu chr2R + chr2R_4998462_4998550 chr2R_4998461_4998462;chr2R_4998550_4998551 chr2R_4998109_4998461;chr2R_4998551_4999122 0.33 0.00 0.72 0.60 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.68 0.68 0.00 0.39 0.98 0.57 0.00 0.00 0.91 0.00 0.81 0.00 4.67 3.25 1.33 0.00 0.40 0.00 NA 0.00 1.01 0.00 1.05 0.71 0.00 0.21 0.00 0.27 0.66 0.00 0.17 0.74 0.00 0.65 0.73 0.61 0.48 2.27 0.58 0.43 0.00 0.44 0.00 0.17 K intron_retention MRP,F_chr2L_12727117_12736035 chr2L + chr2L_12731067_12737958 chr2L_12731066_12731067;chr2L_12737958_12737959 chr2L_12730998_12731066;chr2L_12737959_12738176 71.43 69.23 66.67 85.71 NA NA 86.67 76.19 90.91 NA NA 35.71 90.00 NA 75.00 93.33 NA NA NA 70.00 64.71 100.00 85.19 76.92 100.00 NA 68.75 88.89 60.00 70.00 NA NA 90.91 68.42 NA 73.91 63.64 NA 66.67 76.19 NA 71.43 NA 71.43 NA 60.00 NA 71.43 59.09 NA 62.50 81.82 46.67 63.64 77.78 NA NA 41.67 K intron_retention Ac76E,I_chr3L_19966672_19966735,chr3L_19968880_19969189.0 chr3L + chr3L_19968576_19969190 chr3L_19968575_19968576;chr3L_19969190_19969191 chr3L_19968471_19968575;chr3L_19969191_19969416 16.67 NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG33111,I_chr3R_19633752_19633821,eIF4G2 chr3R - chr3R_19633752_19643948 chr3R_19633751_19633752;chr3R_19643948_19643949 chr3R_19633652_19633751;chr3R_19643949_19644333 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG6838,I_chr3L_22709306_22709668 chr3L - chr3L_22709303_22709397 chr3L_22709302_22709303;chr3L_22709397_22709398 chr3L_22709206_22709302;chr3L_22709398_22709514 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.83 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 K alternative_acceptor Eno,I_chr2L_1726650_1727645,I_chr2L_1726656_1727485,EI_chr2L_1727403_1727645,I_chr2L_1728229_1728302 chr2L - chr2L_1726656_1727645;chr2L_1726650_1727645;chr2L_1727559_1727645 chr2L_1727403_1727645 chr2L_1727646_1727735;chr2L_1726556_1726649 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CdGAPr chr2L - chr2L_19777015_19777081 chr2L_19777021_19777081 chr2L_19777082_19778946;chr2L_19776320_19777014 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.68 97.78 100.00 100.00 100.00 100.00 100.00 99.01 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Df31,RE_chr2L_21628206_21629662,I_chr2L_21628206_21629666,I_chr2L_21628210_21628515,I_chr2L_21628210_21628944,I_chr2L_21628210_21629216,EI_chr2L_21628210_21629715,REI_chr2L_21628210_21629884,I_chr2L_21628224_21629666,I_chr2L_21628734_21629666 chr2L - chr2L_21628210_21629216;chr2L_21628210_21629666;chr2L_21628210_21628515;chr2L_21628210_21628944;chr2L_21628210_21629884 chr2L_21628210_21629715 chr2L_21628124_21628209;chr2L_21629885_21629918 0.02 0.00 0.00 0.18 0.08 0.00 0.11 0.05 0.00 0.08 0.07 0.04 0.00 0.00 0.00 0.05 0.07 0.00 0.06 0.02 0.00 0.31 0.05 0.13 0.00 0.32 0.27 0.21 0.12 0.24 0.08 0.08 0.18 0.00 0.00 0.10 0.06 0.00 0.00 0.00 0.12 0.00 0.08 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.15 0.06 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG5594,CG2812 chr2R + chr2R_19796155_19797200 chr2R_19796169_19797200 chr2R_19797201_19797332;chr2R_19796020_19796154 3.78 2.41 6.54 4.66 4.50 4.62 5.39 9.13 3.77 6.35 5.75 3.91 3.05 3.36 3.09 3.28 1.77 5.19 3.62 4.80 6.45 2.27 4.50 4.05 4.59 1.77 2.22 1.25 2.63 2.08 3.45 6.00 5.49 5.18 4.17 3.60 3.78 0.74 2.11 5.24 3.95 4.52 2.86 2.86 1.65 5.30 1.77 2.77 4.85 2.20 3.54 1.85 3.95 5.88 4.35 1.85 6.98 0.57 K intron_retention CG2694,I_chrX_2608271_2608320,I_chrX_2609471_2609546,RI_chrX_2622297_2622430,RI_chrX_2622435_2622577 chrX + chrX_2608244_2608320 chrX_2608243_2608244;chrX_2608320_2608321 chrX_2608171_2608243;chrX_2608321_2608420 60.00 NA NA NA NA NA NA NA 62.50 NA NA 81.82 NA NA NA 53.85 NA NA 54.55 52.94 NA NA 42.86 NA NA NA NA NA NA NA 76.47 NA NA 70.00 NA NA 72.73 NA 66.67 60.00 NA 50.00 NA NA NA NA NA 58.33 53.85 NA 88.89 NA NA NA NA NA NA 60.00 K intron_retention CG7639 chr2R - chr2R_10876379_10876439 chr2R_10876378_10876379;chr2R_10876439_10876440 chr2R_10876267_10876378;chr2R_10876440_10876983 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.38 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3071298_3073080;chr3L_3071190_3073080 chr3L_3071308_3073080 chr3L_3073081_3073149;chr3L_3071183_3071189 17.43 NA 20.00 18.18 NA NA 16.67 13.33 NA NA NA 25.00 12.50 NA 18.18 13.79 NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA 27.27 NA NA 11.76 NA NA NA NA NA 37.50 NA 20.00 NA NA NA NA NA NA 6.90 NA NA NA NA NA NA NA NA NA K intron_retention CG17660 chr2L - chr2L_1708678_1708820 chr2L_1708677_1708678;chr2L_1708820_1708821 chr2L_1708640_1708677;chr2L_1708821_1708909 1.04 2.50 1.56 0.00 1.85 3.03 2.60 0.00 1.52 2.70 3.57 1.83 0.00 5.26 2.90 0.00 0.00 0.00 0.00 2.61 0.00 1.94 0.00 0.00 0.00 0.00 1.04 1.61 3.33 0.00 2.90 3.85 1.37 2.22 0.00 1.47 2.34 0.00 1.41 0.95 3.92 0.91 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 1.90 0.00 2.35 0.00 0.00 2.82 3.57 0.00 K intron_retention mbl,I_chr2R_13163569_13203579 chr2R + chr2R_13239811_13246810 chr2R_13239810_13239811;chr2R_13246810_13246811 chr2R_13239634_13239810;chr2R_13246811_13247050 0.00 0.00 7.69 3.85 NA 0.00 0.00 10.87 0.00 0.00 NA 5.17 NA 0.00 5.41 0.00 0.00 0.00 4.35 3.03 0.00 14.29 6.67 NA NA 0.00 0.00 NA 0.00 0.00 4.44 NA 0.00 5.56 NA 5.00 3.70 NA 0.00 8.33 NA 2.13 0.00 0.00 NA 0.00 NA 0.00 4.65 NA NA NA NA NA 2.94 NA NA 0.00 K alternative_donor RpL8,I_chr3L_2587513_2587750,I_chr3L_2587600_2587750,RI_chr3L_2587690_2587750,I_chr3L_2589746_2592161 chr3L + chr3L_2587514_2587750;chr3L_2587690_2587750 chr3L_2587600_2587750 chr3L_2587751_2587850;chr3L_2587500_2587513 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.03 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.02 0.02 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.04 0.06 0.04 0.04 0.10 0.00 0.04 0.05 0.00 K intron_retention CG10337 chr2L - chr2L_19546426_19546646 chr2L_19546425_19546426;chr2L_19546646_19546647 chr2L_19546203_19546425;chr2L_19546647_19547031 0.00 0.00 0.00 0.00 0.00 0.00 9.68 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 6.06 0.00 0.00 0.00 1.43 0.00 6.67 0.00 0.00 0.00 NA 0.00 7.46 0.00 0.00 5.56 0.00 NA 2.63 0.00 8.00 0.00 0.00 0.00 6.25 0.00 3.77 0.00 0.00 NA 0.00 0.00 0.00 0.00 7.32 0.00 0.00 0.00 3.85 0.00 0.00 9.09 NA K jcn_only_AA ifc,I_chr2L_5986893_5987347,RI_chr2L_5987175_5987347,noncoding_1271 chr2L + chr2L_5986893_5987615 chr2L_5986893_5987347 chr2L_5986793_5986892;chr2L_5987616_5987779 0.57 1.09 0.27 0.00 0.37 0.00 0.22 0.59 0.72 0.00 1.56 1.09 1.74 0.33 0.97 0.68 0.82 0.00 0.62 0.53 0.35 0.34 0.67 0.67 2.02 0.00 1.32 2.54 0.00 0.00 1.00 3.68 1.04 0.19 0.45 0.00 0.31 1.07 1.11 0.28 2.11 0.33 0.44 1.32 1.10 0.00 0.00 1.52 0.57 1.07 0.30 0.99 0.00 0.00 0.53 1.57 0.71 0.00 K jcn_only_AA Nmnat chr3R + chr3R_20772018_20772675;chr3R_20772018_20772605 chr3R_20772018_20772197 chr3R_20771916_20772017;chr3R_20772676_20772744 9.52 NA NA NA NA NA 4.55 0.00 12.50 40.91 NA 25.00 NA NA NA NA NA NA NA 4.00 NA 0.00 12.12 NA NA NA 0.00 NA 0.00 NA 4.55 10.00 NA 0.00 NA 0.00 8.70 NA NA 15.38 9.52 17.39 NA 19.35 13.04 5.13 NA 6.45 4.00 9.09 20.00 NA 14.81 13.64 NA 9.52 14.71 14.29 K alternative_donor dorsal,RI_chr2L_17438018_17439189,I_chr2L_17442335_17442399,FI_chr2L_17449369_17450215,RI_chr2L_17450002_17450219 chr2L - chr2L_17442335_17442403 chr2L_17442335_17442399 chr2L_17442235_17442334;chr2L_17442404_17442499 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 1.23 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.98 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 1.02 0.00 0.00 0.00 0.00 1.37 0.00 0.00 K intron_retention Oda,I_chr2R_8055426_8055498,RI_chr2R_8057550_8061595 chr2R - chr2R_8055433_8055498 chr2R_8055432_8055433;chr2R_8055498_8055499 chr2R_8053976_8055432;chr2R_8055499_8055598 0.00 0.00 0.00 0.00 0.58 1.56 0.81 0.56 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 2.53 0.16 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 K cassette mys,I_chrX_7958795_7961094 chrX + chrX_7958795_7961094;chrX_7959566_7961094 chrX_7958795_7960130,chrX_7959566_7960130;chrX_7960216_7961094 chrX_7960131_7960215 chrX_7958695_7958794;chrX_7961095_7961194 16.80 20.83 16.67 9.88 23.57 14.72 9.05 13.20 18.24 10.75 8.02 7.30 31.91 24.00 19.21 8.26 34.58 14.44 21.07 25.72 10.68 10.55 13.26 14.00 15.79 33.33 15.79 21.57 8.24 22.95 22.15 18.64 22.47 16.24 18.34 16.80 17.17 13.37 18.38 20.83 20.00 16.06 15.46 15.03 19.67 22.41 17.74 25.00 11.71 6.67 14.81 20.26 6.34 17.17 19.49 17.56 6.94 7.55 K alternative_donor CG31120,I_chr3R_20743232_20743287 chr3R - chr3R_20743232_20743430 chr3R_20743232_20743287 chr3R_20743132_20743231;chr3R_20743431_20743491 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 4.76 NA NA NA NA NA NA NA NA NA NA 9.09 0.00 NA NA NA NA NA NA NA 6.67 NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 K multi_cassette Nos,I_chr2L_10826086_10826539 chr2L - chr2L_10804897_10812286 chr2L_10804897_10805618;chr2L_10805744_10805984;chr2L_10807128_10807290;chr2L_10807625_10812286 chr2L_10805619_10805743;chr2L_10805985_10807127;chr2L_10807291_10807624 chr2L_10804830_10804896;chr2L_10812287_10812302 100.00 NA NA NA NA NA NA 50.00 50.00 100.00 NA NA NA NA NA 100.00 NA NA NA 100.00 NA 60.00 100.00 100.00 50.00 NA 50.00 NA 66.67 100.00 NA 75.00 100.00 NA 100.00 100.00 50.00 100.00 100.00 NA 100.00 100.00 NA 100.00 50.00 100.00 100.00 75.00 NA NA 100.00 100.00 NA 50.00 NA 100.00 100.00 100.00 K jcn_only_AD MED26,RE_chr4_803564_803799,RI_chr4_803872_803924,I_chr4_807836_808089 chr4 - chr4_803872_803927 chr4_803872_803924 chr4_803800_803871;chr4_803928_804024 1.54 NA NA 1.79 NA NA 0.00 3.51 0.00 NA NA 0.00 8.70 0.00 0.00 1.59 NA NA 4.17 6.12 NA NA 8.33 NA NA 4.35 NA NA NA NA 7.89 NA NA 2.00 NA NA NA NA NA 0.00 NA 0.00 0.00 4.00 NA NA NA NA 1.49 NA 0.00 NA NA NA 0.00 NA NA NA K alternative_acceptor CG6459,RI_chr2R_13565425_13565874 chr2R - chr2R_13559312_13559369 chr2R_13559326_13559369 chr2R_13559370_13559714;chr2R_13558812_13559311 0.00 0.00 0.00 0.37 0.00 0.00 0.40 0.74 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 1.53 0.00 0.00 0.00 0.00 0.39 0.43 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 K intron_retention EF_chr2L_12038171_12038292,CG6766 chr2L - chr2L_12040380_12040437 chr2L_12040379_12040380;chr2L_12040437_12040438 chr2L_12040265_12040379;chr2L_12040438_12040698 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.97 NA 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG42303 chr3L + chr3L_2653658_2653717 chr3L_2653657_2653658;chr3L_2653717_2653718 chr3L_2652134_2653657;chr3L_2653718_2653906 0.00 0.00 NA 31.58 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 6.67 0.00 NA NA NA NA 0.00 17.65 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 K alternative_donor CG1640,RI_chrX_13265127_13267895,I_chrX_13265553_13267895,I_chrX_13265618_13267895,RI_chrX_13266680_13267895,RI_chrX_13267529_13267895,I_chrX_13271541_13271890 chrX + chrX_13265401_13267895;chrX_13265248_13267895;chrX_13265094_13267895;chrX_13265295_13267895 chrX_13265560_13267895 chrX_13267896_13267973;chrX_13265065_13265093 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Cip4,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4324451_4324921 chr3L_4324451_4324861 chr3L_4324284_4324450;chr3L_4324922_4324996 65.45 57.14 57.14 61.25 61.36 69.57 67.89 66.67 65.25 91.30 56.52 59.13 83.33 70.73 53.70 64.29 69.44 88.89 67.31 65.45 70.97 71.43 60.82 62.50 47.06 60.34 62.69 58.82 86.67 66.67 65.45 62.96 60.47 63.51 75.76 65.85 71.43 73.33 59.49 43.75 74.36 62.50 55.26 61.54 83.87 66.00 70.83 73.85 63.79 61.11 63.64 72.09 73.91 62.50 55.74 78.12 70.31 80.30 K intron_retention out chrX - chrX_19207472_19207557 chrX_19207471_19207472;chrX_19207557_19207558 chrX_19207345_19207471;chrX_19207558_19207566 0.00 NA NA NA NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 6.67 0.00 NA NA 3.70 0.00 NA 0.00 NA NA 3.03 0.00 NA NA 0.00 0.00 0.00 6.82 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention CG2065 chr2R + chr2R_3552015_3552079 chr2R_3552014_3552015;chr2R_3552079_3552080 chr2R_3551858_3552014;chr2R_3552080_3552339 0.00 0.00 0.00 3.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 1.03 3.45 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 3.64 3.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1968 chr2R + chr2R_5174443_5174500 chr2R_5174442_5174443;chr2R_5174500_5174501 chr2R_5174304_5174442;chr2R_5174501_5175132 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K cassette CG14657 chr3R - chr3R_645633_646054 chr3R_645633_645832;chr3R_645989_646054 chr3R_645833_645988 chr3R_645516_645632;chr3R_646055_647174 18.75 18.52 11.11 12.20 16.67 29.41 36.67 27.27 27.12 25.00 16.67 14.58 89.47 23.08 24.24 18.18 33.33 16.13 37.50 23.08 23.53 37.50 10.00 21.21 8.00 9.38 18.18 20.00 18.18 15.00 24.14 NA 7.69 31.25 17.86 0.00 12.50 14.71 13.79 19.35 12.50 22.64 35.00 16.13 NA 14.81 22.22 25.00 26.83 18.75 25.00 22.73 4.55 17.39 21.62 17.65 19.05 8.33 K intron_retention HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13162296_13163860 chrX_13162295_13162296;chrX_13163860_13163861 chrX_13161355_13162295;chrX_13163861_13163991 7.14 NA NA 7.14 NA NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RI_chrX_8468338_8469380,I_chrX_8468338_8477573,CG12065,I_chrX_8469524_8477579,CE_chrX_8469528_8477573 chrX + chrX_8468441_8469383 chrX_8468440_8468441;chrX_8469383_8469384 chrX_8468351_8468440;chrX_8469384_8469480 10.81 7.69 21.43 3.39 4.26 13.16 16.95 6.25 10.48 11.54 0.00 15.28 5.26 8.89 17.07 9.57 12.20 13.79 8.33 8.24 10.81 6.50 11.27 12.50 20.51 26.19 20.51 21.43 25.00 5.26 9.26 13.79 10.00 10.14 10.87 11.90 9.76 10.00 8.00 28.57 22.58 7.32 9.52 13.79 10.71 13.56 2.94 20.45 9.52 7.84 11.48 11.11 17.86 8.33 10.42 14.58 6.15 12.68 K jcn_only_AD CG3829,I_chr2R_20874677_20875710,I_chr2R_20874711_20875717,I_chr2R_20875172_20875710,I_chr2R_20875497_20875710 chr2R + chr2R_20875497_20875710;chr2R_20875172_20875710;chr2R_20875350_20875710 chr2R_20874711_20875710 chr2R_20875711_20875810;chr2R_20874611_20874710 24.00 NA 21.15 17.65 36.00 15.62 23.08 16.67 22.06 NA 24.00 31.25 20.69 9.09 17.65 12.12 22.58 26.83 16.67 26.14 14.29 47.06 NA NA NA 25.64 NA NA 45.45 NA 50.00 NA NA 20.59 NA NA NA NA NA 48.15 NA 27.08 32.00 NA NA 72.73 NA 72.73 21.28 NA NA NA NA NA 28.57 NA NA 50.00 K intron_retention CG5188 chr2L + chr2L_10428931_10428985 chr2L_10428930_10428931;chr2L_10428985_10428986 chr2L_10428776_10428930;chr2L_10428986_10429659 0.00 NA NA 0.00 0.00 NA 4.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA 0.00 20.00 0.00 NA 0.00 NA 0.00 0.00 14.81 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 0.00 K intron_retention Pp4-19C,I_chrX_20293932_20294672,RI_chrX_20293980_20294069,REI_chrX_20294004_20294672 chrX - chrX_20293980_20294069 chrX_20293979_20293980;chrX_20294069_20294070 chrX_20293904_20293979;chrX_20294070_20294083 87.50 NA 90.00 100.00 NA NA 87.50 92.31 90.00 NA NA 90.91 NA NA NA NA NA 63.64 87.50 92.86 NA 83.33 92.31 80.00 NA NA NA 87.50 72.73 87.50 NA NA 100.00 100.00 NA NA NA 90.00 NA 81.25 NA 71.43 NA 62.50 80.00 87.50 NA 90.91 71.43 87.50 NA NA NA NA NA NA NA 100.00 K jcn_only_AD E_chr4_592469_594231,Ephrin,I_chr4_595055_597604,RI_chr4_596272_596341 chr4 + chr4_592737_594238;chr4_592490_594238;chr4_592593_594238;chr4_592469_594238;chr4_592410_594238;chr4_592798_594238 chr4_592646_594238 chr4_594239_594331;chr4_592404_592409 0.00 0.00 4.35 1.39 0.00 0.00 1.05 0.00 1.16 NA NA 0.00 0.00 0.00 2.94 0.00 0.00 NA 0.00 1.61 0.00 NA 3.70 NA 0.00 0.00 3.03 NA NA NA 0.00 NA NA 5.06 0.00 0.00 NA NA NA 3.33 NA 1.61 0.00 0.00 NA NA NA NA 1.20 NA 2.70 0.00 NA NA 0.00 NA NA NA K alternative_acceptor CG9086,CEI_chrX_16859981_16861527,I_chrX_16861895_16862053 chrX - chrX_16861753_16862542 chrX_16861895_16862542 chrX_16862543_16862684;chrX_16861528_16861752 87.34 89.66 87.50 58.93 81.82 74.07 91.84 87.50 87.34 89.47 92.86 85.71 79.41 87.88 80.49 84.91 80.00 80.65 85.37 83.02 86.21 100.00 77.50 89.66 94.74 88.24 88.00 61.54 91.67 78.79 83.72 88.89 89.66 85.71 95.65 96.55 87.10 87.50 96.00 88.46 92.31 92.06 83.33 95.83 91.67 95.00 71.43 90.24 84.93 71.43 75.68 83.33 93.75 57.14 88.10 76.92 50.00 85.71 K intron_retention AT25722,CG3356 chr2R + chr2R_20086740_20086799 chr2R_20086739_20086740;chr2R_20086799_20086800 chr2R_20086019_20086739;chr2R_20086800_20087211 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG32016,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_975490_975549 chr4_975490_975546 chr4_975436_975489;chr4_975550_975646 93.42 92.11 97.78 89.06 90.00 88.89 96.10 90.74 91.67 NA 96.77 94.79 91.53 94.12 94.12 86.41 86.67 100.00 95.65 92.50 93.10 NA 95.35 96.67 100.00 95.56 89.36 NA 100.00 NA 85.00 96.43 100.00 90.72 89.74 92.86 NA 96.00 88.89 96.61 NA 87.80 89.47 95.00 NA 90.00 95.65 93.75 88.24 94.12 95.74 88.89 91.67 95.00 95.52 96.55 87.50 92.86 K jcn_only_AD CG8184,I_chrX_15620707_15620769 chrX + chrX_15617113_15617265;chrX_15617191_15617265 chrX_15617158_15617265 chrX_15617266_15618411;chrX_15615597_15617112 79.40 73.91 71.43 NA 69.57 75.86 85.00 85.71 82.46 87.50 NA 91.30 NA 78.57 78.79 71.88 NA 71.43 82.61 86.84 84.62 72.34 80.77 78.79 NA NA 74.36 80.49 81.13 85.71 71.43 NA 84.17 74.51 80.00 NA 77.94 68.97 78.26 83.78 NA 78.69 85.00 86.15 89.36 84.21 76.00 85.71 82.50 NA 76.92 88.00 74.19 NA 73.08 NA NA 72.00 K intron_retention CG7120,I_chr3L_8393044_8393116 chr3L + chr3L_8393790_8393848 chr3L_8393789_8393790;chr3L_8393848_8393849 chr3L_8393227_8393789;chr3L_8393849_8395118 9.52 NA NA NA NA NA NA 0.00 9.52 NA NA NA NA NA NA NA NA NA NA 0.00 NA 45.45 NA NA NA NA 27.27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG13902,I_chr3L_840962_841041 chr3L - chr3L_840962_841041;chr3L_840991_841041 chr3L_840970_841041 chr3L_841042_841141;chr3L_840862_840961 5.43 5.41 0.00 3.64 NA 4.76 2.94 5.56 3.85 11.11 5.88 4.35 6.45 6.67 7.69 2.44 0.00 2.63 0.00 3.23 8.33 13.64 2.94 8.82 0.00 2.78 3.03 10.00 2.08 8.16 11.11 4.17 5.45 1.92 4.55 11.63 7.32 4.00 5.41 7.58 5.66 5.06 10.00 9.30 4.35 7.25 0.00 5.63 9.38 14.71 6.98 3.45 18.18 17.86 4.08 5.71 10.34 4.23 K intron_retention CG8709,I_chr2R_4027128_4027182,I_chr2R_4027682_4027747,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4028119_4028185 chr2R_4028118_4028119;chr2R_4028185_4028186 chr2R_4028019_4028118;chr2R_4028186_4028252 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3415 chrX + chrX_16165130_16165473 chrX_16165129_16165130;chrX_16165473_16165474 chrX_16164853_16165129;chrX_16165474_16166261 0.00 0.00 0.00 1.96 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.86 0.00 1.43 0.00 0.57 0.00 0.00 0.00 0.00 1.49 0.00 2.38 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 K alternative_acceptor mbc,I_chr3R_19615584_19615649,I_chr3R_19625220_19625288 chr3R + chr3R_19625220_19625288 chr3R_19625220_19625285 chr3R_19625120_19625219;chr3R_19625289_19625372 97.78 94.12 96.15 98.44 88.89 96.00 97.92 97.96 98.48 100.00 96.55 98.21 96.43 96.67 100.00 97.22 97.37 100.00 97.14 98.39 97.14 95.24 96.15 96.36 96.88 95.65 97.92 100.00 100.00 100.00 96.55 100.00 95.24 97.73 100.00 96.43 100.00 95.83 100.00 97.92 95.83 94.03 95.83 97.37 100.00 100.00 100.00 100.00 98.00 96.97 96.15 100.00 100.00 100.00 100.00 97.78 100.00 90.91 K intron_retention CG11753 chr3R + chr3R_4479008_4479077 chr3R_4479007_4479008;chr3R_4479077_4479078 chr3R_4478941_4479007;chr3R_4479078_4479145 6.10 6.84 8.33 24.29 5.83 4.11 10.74 9.09 6.09 6.90 11.49 5.62 10.67 6.90 2.35 7.06 3.12 6.10 8.14 6.55 8.99 4.60 7.25 5.65 8.93 15.56 10.00 8.06 20.00 2.68 5.88 4.88 3.12 8.77 4.29 8.97 4.62 5.51 4.97 6.15 9.46 8.09 10.00 4.14 7.89 4.80 4.24 2.50 6.14 5.19 7.76 3.95 4.11 3.39 5.49 5.06 4.85 4.48 K jcn_only_AA tra2,psnoRNA:tra2-a,REFI_chr2R_10491644_10491701 chr2R - chr2R_10490382_10490665 chr2R_10490411_10490665 chr2R_10490666_10490794;chr2R_10490009_10490381 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG9776,CG9772 chr3R - chr3R_162125_162190 chr3R_162131_162190 chr3R_162191_163064;chr3R_161731_162124 99.20 98.28 96.55 98.41 96.67 100.00 96.63 98.63 98.00 100.00 100.00 98.81 98.18 100.00 100.00 100.00 100.00 100.00 100.00 99.34 100.00 98.99 100.00 98.95 100.00 95.45 98.59 97.87 97.40 100.00 100.00 100.00 100.00 97.50 100.00 100.00 98.53 100.00 100.00 99.20 98.86 98.89 100.00 98.77 100.00 98.75 98.51 99.08 100.00 100.00 98.86 100.00 96.43 96.00 100.00 100.00 98.91 96.46 K multi_cassette Rad23,I_chr4_328801_328879,RI_chr4_328916_330164 chr4 + chr4_328916_330164 chr4_328916_329056;chr4_329201_329274;chr4_329706_330164 chr4_329057_329200;chr4_329275_329705 chr4_328880_328915;chr4_330165_330259 96.88 100.00 100.00 39.13 100.00 94.12 96.88 100.00 97.73 100.00 100.00 85.71 85.71 94.12 100.00 96.97 100.00 100.00 100.00 96.88 100.00 100.00 96.30 94.74 91.67 78.95 100.00 92.31 100.00 100.00 95.24 100.00 95.24 96.55 92.86 93.33 100.00 100.00 92.86 96.15 91.67 96.97 94.12 95.65 90.00 94.12 100.00 92.31 96.77 100.00 100.00 100.00 92.86 92.86 100.00 100.00 95.24 100.00 K intron_retention CG11586 chr3L - chr3L_4262205_4262263 chr3L_4262204_4262205;chr3L_4262263_4262264 chr3L_4261291_4262204;chr3L_4262264_4262500 0.00 0.00 0.00 3.45 6.90 6.67 3.33 2.44 0.00 0.00 0.00 2.13 0.00 0.00 0.00 8.00 0.00 0.00 0.00 1.43 0.00 0.00 4.08 0.00 0.00 0.00 2.27 6.25 0.00 0.00 9.52 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 5.63 4.35 0.00 4.76 3.70 0.00 0.00 2.56 2.38 0.00 0.00 0.00 0.00 0.00 0.00 6.06 5.56 0.00 0.00 K intron_retention AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9003728_9004650 chrX_9003727_9003728;chrX_9004650_9004651 chrX_9003721_9003727;chrX_9004651_9005038 100.00 100.00 88.89 100.00 NA 100.00 91.67 100.00 100.00 NA NA 93.75 100.00 100.00 100.00 100.00 NA NA 90.00 94.44 NA NA 90.00 NA 100.00 100.00 90.00 NA 88.89 100.00 100.00 NA 100.00 91.67 100.00 92.31 NA NA NA NA 90.91 92.31 NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K jcn_only_AD Cht2,I_chr3L_1754361_1754605,I_chr3L_1754361_1754860 chr3L - chr3L_1754361_1755586;chr3L_1754361_1754605 chr3L_1754361_1754860 chr3L_1754261_1754360;chr3L_1755587_1755934 29.59 NA 29.17 6.06 43.48 42.86 NA 19.23 27.27 NA 21.74 21.74 NA 32.00 22.22 47.83 NA 17.39 30.00 31.03 NA NA NA NA NA 30.00 NA NA NA NA 33.33 NA NA 37.50 NA NA NA NA NA NA NA 24.39 NA NA NA NA NA NA 25.00 NA NA NA NA NA 37.50 NA NA NA K intron_retention RpL15 chr3LHet + chr3LHet_2397841_2398127 chr3LHet_2397840_2397841;chr3LHet_2398127_2398128 chr3LHet_2397802_2397840;chr3LHet_2398128_2398454 99.68 100.00 99.21 99.23 100.00 100.00 99.52 98.84 99.80 98.78 99.40 99.68 99.60 99.47 97.62 99.64 98.86 98.17 98.39 100.00 99.40 100.00 100.00 100.00 100.00 98.62 100.00 100.00 98.94 100.00 99.66 98.94 98.14 98.55 100.00 100.00 100.00 100.00 99.09 100.00 98.85 99.69 100.00 98.21 97.25 99.03 100.00 100.00 99.68 100.00 100.00 100.00 96.97 100.00 99.39 100.00 100.00 99.32 K intron_retention Wwox,I_chr2L_8000434_8000497,Spn28D chr2L - chr2L_8000033_8000107 chr2L_8000032_8000033;chr2L_8000107_8000108 chr2L_7999777_8000032;chr2L_8000108_8000236 3.45 3.45 0.00 25.00 0.00 0.00 0.00 5.88 8.70 3.85 6.67 4.00 NA 0.00 0.00 16.67 0.00 6.25 0.00 8.51 0.00 19.35 3.12 3.28 0.00 5.00 17.14 17.39 24.44 0.00 0.00 0.00 5.00 3.45 0.00 0.00 6.94 4.44 2.08 2.00 3.23 5.00 NA 5.71 5.56 10.26 4.00 3.70 13.79 4.69 1.79 0.00 0.00 5.88 0.00 0.00 2.70 0.00 K intron_retention cora,I_chr2R_15125277_15130573,I_chr2R_15129291_15129988 chr2R + chr2R_15130365_15130573 chr2R_15130364_15130365;chr2R_15130573_15130574 chr2R_15130209_15130364;chr2R_15130574_15130673 0.39 0.46 1.08 0.69 0.35 0.62 0.72 0.65 0.48 0.00 0.82 0.46 0.32 0.57 0.47 0.43 1.35 0.00 0.55 0.59 0.83 0.00 0.62 0.20 0.39 0.00 0.21 0.42 0.00 0.00 0.50 0.00 0.00 0.37 0.00 0.29 0.50 0.55 0.40 0.70 0.00 0.59 0.00 0.00 0.60 0.22 0.39 0.00 0.90 0.13 0.48 0.00 0.00 0.68 0.00 0.20 0.25 0.00 K intron_retention Trap1 chr2R - chr2R_2521454_2521515 chr2R_2521453_2521454;chr2R_2521515_2521516 chr2R_2521152_2521453;chr2R_2521516_2521564 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N cassette Inos,I_chr2R_3344353_3345211 chr2R - chr2R_3343582_3346113 chr2R_3343582_3343653;chr2R_3344353_3346113 chr2R_3343654_3344352 chr2R_3343339_3343581;chr2R_3346114_3346215 100.00 100.00 100.00 99.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K mutually_exclusive ens,I_chr3L_4130719_4131120 chr3L - chr3L_4127163_4129650,chr3L_4129789_4131120;chr3L_4127163_4130388,chr3L_4130644_4131120 chr3L_4127163_4128613,chr3L_4128974_4131120 chr3L_4129651_4129788;chr3L_4130389_4130643 chr3L_4128614_4128973 chr3L_4126989_4127162;chr3L_4131121_4131220 1.59 1.61 2.08 0.00 2.13 2.04 0.00 0.00 0.89 2.38 0.00 1.16 0.00 0.00 1.92 3.23 0.00 2.70 0.00 0.00 0.00 0.92 1.02 2.78 0.00 0.00 1.39 3.70 6.56 1.54 1.59 2.86 2.44 1.27 3.51 1.37 0.87 2.44 3.49 0.89 12.20 1.80 2.44 1.20 5.17 3.70 4.65 1.16 1.18 0.00 1.14 1.67 2.38 3.33 0.00 1.85 3.57 2.22 K jcn_only_AA CG8029,I_chr2R_5095165_5095256 chr2R + chr2R_5095165_5095256 chr2R_5095165_5095252 chr2R_5095083_5095164;chr2R_5095257_5095264 100.00 100.00 100.00 100.00 98.73 100.00 100.00 100.00 100.00 99.01 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.80 100.00 100.00 100.00 100.00 100.00 99.52 100.00 100.00 99.00 100.00 100.00 100.00 100.00 100.00 100.00 99.35 99.18 100.00 100.00 100.00 100.00 98.73 99.60 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 99.35 100.00 100.00 100.00 N jcn_only_AA stc chr2L + chr2L_15114214_15114299;chr2L_15114214_15114311 chr2L_15114214_15114448 chr2L_15114049_15114213;chr2L_15114449_15115753 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1526732_1527189 chr3L_1526731_1526732;chr3L_1527189_1527190 chr3L_1526660_1526731;chr3L_1527190_1527240 88.67 92.86 94.44 88.24 90.00 100.00 88.89 100.00 93.33 NA 80.95 37.93 100.00 93.33 100.00 88.00 100.00 92.86 88.89 75.61 64.71 72.73 88.46 77.78 92.31 NA 92.86 NA 84.62 71.43 92.86 NA 100.00 90.00 85.71 77.78 73.33 91.67 94.12 86.21 87.50 87.88 100.00 93.33 80.00 85.71 94.74 76.47 94.44 75.00 84.21 NA 69.23 71.43 100.00 90.00 76.92 76.92 K alternative_donor Anxb11,I_chrX_16314152_16314405,I_chrX_16314152_16315813 chrX - chrX_16314152_16316028;chrX_16314152_16316199 chrX_16314152_16316276 chrX_16314083_16314151;chrX_16316277_16316298 11.76 12.50 11.11 13.33 55.56 0.00 11.76 10.00 11.76 NA 10.00 3.85 8.33 0.00 10.00 5.88 0.00 33.33 0.00 10.00 12.50 21.43 12.50 12.50 0.00 14.29 0.00 NA 12.50 0.00 11.11 20.00 16.67 14.29 0.00 12.50 0.00 NA 14.29 0.00 NA 6.67 14.29 15.38 0.00 12.50 20.00 14.29 4.35 0.00 9.09 0.00 20.00 NA 23.08 20.00 16.67 27.27 K alternative_acceptor RN-tre chr2R - chr2R_9877474_9878070 chr2R_9877492_9878070 chr2R_9878071_9878197;chr2R_9877190_9877473 98.63 100.00 97.44 100.00 94.44 100.00 86.67 98.11 97.96 96.30 94.44 98.28 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 97.87 100.00 100.00 93.10 100.00 100.00 97.26 97.50 98.63 100.00 98.36 98.15 97.73 97.56 100.00 100.00 97.37 100.00 98.08 100.00 100.00 100.00 98.25 98.90 96.30 98.03 97.40 100.00 97.87 100.00 100.00 100.00 91.49 97.56 100.00 96.47 K alternative_donor RpL18A,I_chr2R_13434492_13434554,I_chr2R_13434492_13434576 chr2R - chr2R_13434492_13434576;chr2R_13434492_13434554 chr2R_13434492_13434913 chr2R_13434392_13434491;chr2R_13434914_13434994 99.91 100.00 99.93 99.84 99.94 99.96 99.72 99.94 99.94 100.00 100.00 99.93 99.88 99.94 99.94 99.91 99.93 100.00 100.00 99.97 100.00 99.68 98.97 99.77 99.52 100.00 98.77 99.77 99.15 99.84 99.91 99.89 99.94 99.97 100.00 100.00 99.87 100.00 99.83 99.94 99.85 99.98 99.95 99.90 99.90 99.86 99.78 99.87 99.86 99.25 98.21 100.00 99.90 99.15 100.00 99.85 99.62 99.88 K intron_retention bai chr3R + chr3R_20865679_20865743 chr3R_20865678_20865679;chr3R_20865743_20865744 chr3R_20865608_20865678;chr3R_20865744_20865870 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6045,I_chr3R_11373181_11373245 chr3R - chr3R_11373181_11373246 chr3R_11373180_11373181;chr3R_11373246_11373247 chr3R_11373081_11373180;chr3R_11373247_11373345 19.44 15.00 19.05 11.63 30.00 20.83 18.52 17.39 21.43 NA 40.00 25.00 28.57 21.43 24.14 19.51 13.64 10.53 19.44 11.11 20.00 21.43 20.00 NA NA 52.38 NA NA NA NA 23.53 NA 23.33 19.44 20.00 NA NA NA NA 13.04 NA 12.50 23.08 17.65 NA NA NA 18.75 16.36 NA 12.50 NA NA NA 18.75 NA NA 15.38 K jcn_only_AD MB8.chr3R.pasa.66,CG1105,I_chr3R_2892020_2892122,RI_chr3R_2892020_2892252 chr3R - chr3R_2892020_2892252;chr3R_2892020_2892645 chr3R_2892020_2892122 chr3R_2891920_2892019;chr3R_2892646_2892745 0.00 2.17 0.00 0.00 0.00 2.13 1.54 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 1.96 0.00 2.13 4.44 0.00 4.88 2.78 1.25 2.17 0.00 1.61 0.00 1.92 4.17 0.00 1.05 0.00 3.92 5.00 3.17 0.00 0.00 3.49 0.00 1.25 0.00 3.23 5.88 0.00 0.00 1.54 0.00 K intron_retention CE_chrX_19156179_19164138,CG8010,CG32536 chrX - chrX_19162632_19162709 chrX_19162631_19162632;chrX_19162709_19162710 chrX_19162538_19162631;chrX_19162710_19162926 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 4.35 0.00 1.23 0.00 0.00 1.23 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chrX_7993650_7995126,Gclc chrX - chrX_8009614_8009706 chrX_8009613_8009614;chrX_8009706_8009707 chrX_8009450_8009613;chrX_8009707_8009743 53.24 NA NA NA NA NA NA NA 52.63 NA NA 38.46 NA NA NA NA NA NA NA 54.55 NA NA NA NA NA NA NA NA 77.78 NA NA NA NA NA NA NA NA NA NA NA NA 53.85 NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG3107 chr2R + chr2R_978147_979376 chr2R_978248_979376 chr2R_979377_979733;chr2R_978101_978146 13.04 NA NA 18.18 NA 13.04 4.00 22.86 15.38 NA NA 12.82 NA NA NA 12.50 NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA 7.89 NA NA NA NA NA 8.70 NA NA NA K alternative_donor CG8709,I_chr2R_4027128_4027182,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030636,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4030580_4033256;chr2R_4030580_4033259 chr2R_4030580_4030636 chr2R_4030480_4030579;chr2R_4033260_4033265 6.12 4.55 4.88 3.53 7.41 4.76 6.98 7.50 7.41 5.88 6.06 7.87 8.00 7.89 8.57 8.47 4.65 10.00 4.62 7.59 6.45 12.50 4.11 5.08 3.92 6.38 6.45 7.69 10.53 4.65 7.50 4.76 5.71 6.41 6.06 5.13 6.25 3.57 6.12 6.12 4.76 6.32 7.32 6.52 5.56 6.25 6.67 8.82 7.25 3.45 5.80 6.06 3.70 5.26 7.41 3.45 5.56 5.71 K intron_retention CG42595,I_chr2RHet_3155517_3174709,RI_chr2RHet_3175044_3179353,RI_chr2RHet_3179300_3179586,I_chr2RHet_3179481_3179586 chr2RHet - chr2RHet_3179300_3179353 chr2RHet_3179299_3179300;chr2RHet_3179353_3179354 chr2RHet_3179200_3179299;chr2RHet_3179354_3179453 45.80 52.94 NA 31.43 NA 41.67 43.18 43.48 49.06 NA NA 47.37 30.00 57.14 NA 53.57 NA NA 38.89 47.83 NA NA 69.23 41.67 NA NA 81.82 NA NA 45.45 44.00 NA NA 34.48 NA NA NA NA NA 50.00 NA 50.00 37.50 41.18 NA NA NA 30.77 55.56 NA NA 46.15 NA NA 58.33 NA NA NA K intron_retention ETHR chr3R + chr3R_17085356_17085428 chr3R_17085355_17085356;chr3R_17085428_17085429 chr3R_17085193_17085355;chr3R_17085429_17085591 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K intron_retention l(1)G0148 chrX + chrX_6549806_6551639 chrX_6549805_6549806;chrX_6551639_6551640 chrX_6549586_6549805;chrX_6551640_6553756 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 K jcn_only_AA Pect,I_chr2L_13207997_13208109,E_chr2L_13208285_13210076 chr2L + chr2L_13208778_13209435;chr2L_13208778_13209501;chr2L_13208778_13209471 chr2L_13208778_13209492 chr2L_13208665_13208777;chr2L_13209502_13209599 5.50 4.44 4.99 2.40 7.50 5.40 1.74 3.70 4.65 3.70 2.46 6.21 38.89 7.74 5.50 4.43 6.56 5.50 4.12 7.17 3.76 13.75 6.44 7.60 6.37 3.09 5.04 12.75 4.22 9.09 4.57 6.29 8.66 3.99 9.76 2.46 7.12 5.76 4.72 3.93 6.22 5.55 4.71 5.82 4.95 8.06 4.95 7.94 2.93 6.33 6.78 5.68 1.45 7.92 7.54 7.07 3.38 3.50 K intron_retention CG12030 chr3L + chr3L_649052_649125 chr3L_649051_649052;chr3L_649125_649126 chr3L_648517_649051;chr3L_649126_649419 100.00 100.00 96.00 100.00 100.00 95.83 97.62 97.44 100.00 90.91 100.00 100.00 100.00 100.00 94.12 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG30001 chr2R - chr2R_5709396_5709451 chr2R_5709395_5709396;chr2R_5709451_5709452 chr2R_5709251_5709395;chr2R_5709452_5709603 14.29 NA NA 4.00 NA NA 27.27 NA 6.25 NA NA 11.76 NA 6.67 NA 35.71 NA NA NA 17.24 NA NA NA 14.29 NA NA NA NA NA NA 14.29 NA NA 22.22 NA NA 6.67 NA 33.33 NA NA 13.33 NA NA NA 18.75 36.36 NA 23.53 26.32 13.33 NA NA NA NA NA 0.00 10.53 K intron_retention CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4990630_4990691 chr2L_4990629_4990630;chr2L_4990691_4990692 chr2L_4990506_4990629;chr2L_4990692_4990839 1.81 1.24 1.33 2.93 0.00 0.95 3.05 1.65 2.25 5.56 0.00 2.14 0.00 1.56 2.16 2.40 1.57 1.59 0.75 2.35 0.00 3.93 1.96 2.20 6.32 5.92 4.04 8.74 9.27 2.53 1.32 2.68 2.55 2.02 2.33 3.81 1.61 0.65 1.30 1.81 11.83 0.78 0.00 1.33 2.36 1.22 0.00 3.81 1.20 0.00 1.66 3.10 1.37 1.23 0.00 2.92 0.00 3.57 K intron_retention srp,I_chr3R_11825782_11827473,I_chr3R_11826508_11826910 chr3R + chr3R_11825782_11826910 chr3R_11825781_11825782;chr3R_11826910_11826911 chr3R_11825682_11825781;chr3R_11826911_11827010 3.85 4.11 3.61 11.54 0.00 3.95 3.77 7.84 6.25 3.85 4.92 4.72 6.00 3.45 4.49 11.43 4.65 0.00 7.55 1.74 1.28 2.92 7.20 4.46 5.26 0.00 3.57 7.41 6.25 4.03 6.15 1.37 3.39 3.77 2.70 6.93 4.10 2.82 2.26 5.22 6.45 2.45 5.00 4.55 0.91 2.11 0.00 3.85 3.08 2.17 2.30 7.27 0.00 3.39 5.41 0.00 0.00 2.12 K alternative_acceptor Hel25E chr2L - chr2L_5541970_5542182 chr2L_5541977_5542182 chr2L_5542183_5542310;chr2L_5541723_5541969 98.00 98.51 98.11 98.71 100.00 98.15 98.00 97.08 97.74 100.00 100.00 99.28 98.28 98.65 98.59 98.82 95.38 98.18 97.18 97.22 95.83 98.63 98.59 95.45 95.24 98.25 98.21 97.14 100.00 100.00 98.61 96.00 100.00 95.80 98.00 97.87 96.97 96.43 100.00 100.00 100.00 99.05 94.83 95.65 96.43 96.92 97.30 100.00 97.69 97.22 97.47 97.87 100.00 98.00 96.88 96.36 98.15 97.92 K intron_retention I_chr2R_10048593_10048655,Tango7 chr2R - chr2R_10051876_10051991 chr2R_10051875_10051876;chr2R_10051991_10051992 chr2R_10051696_10051875;chr2R_10051992_10052150 0.00 0.00 0.34 0.62 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 1.35 0.00 0.48 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.62 0.33 0.52 0.00 0.42 0.00 0.00 0.00 0.33 0.50 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mRpL28,CG3792,CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4974158_4974276 chr2L_4974157_4974158;chr2L_4974276_4974277 chr2L_4974010_4974157;chr2L_4974277_4975100 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 1.92 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 1.67 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 1.36 3.08 0.00 0.00 0.00 2.11 0.00 2.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG42270,I_chrX_17615384_17615455,I_chrX_17639729_17640603 chrX + chrX_17644520_17644586 chrX_17644519_17644520;chrX_17644586_17644587 chrX_17641001_17644519;chrX_17644587_17644881 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 2.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Eb1,RI_chr2R_2640290_2642206,I_chr2R_2640494_2642206,I_chr2R_2642491_2642549 chr2R + chr2R_2640290_2640353 chr2R_2640290_2640347 chr2R_2640190_2640289;chr2R_2640354_2640493 99.39 98.35 99.37 99.57 100.00 99.21 99.46 99.16 99.64 98.48 100.00 99.20 100.00 100.00 100.00 99.22 99.07 99.31 100.00 99.05 99.19 99.23 99.21 100.00 100.00 99.34 100.00 98.55 98.73 100.00 99.56 100.00 99.17 100.00 100.00 99.14 99.42 99.24 99.44 99.39 100.00 99.66 100.00 99.44 100.00 99.32 99.38 98.80 99.34 99.22 100.00 99.15 98.92 99.21 99.46 100.00 99.47 98.89 K alternative_acceptor RI_chrX_1796525_1796585,mip130,I_chrX_1820956_1821011,CG11596 chrX + chrX_1822614_1823084 chrX_1822614_1823033 chrX_1822367_1822613;chrX_1823085_1823203 91.49 87.88 100.00 96.97 96.77 88.24 96.77 98.00 97.14 94.44 96.43 93.10 100.00 96.77 97.44 95.12 100.00 88.89 96.55 97.33 86.67 86.21 87.04 87.50 95.65 100.00 97.06 91.30 88.89 88.89 91.49 86.36 88.46 96.00 100.00 87.50 86.05 87.88 92.11 82.69 81.82 93.33 96.88 89.47 90.91 85.71 91.43 84.85 92.45 89.47 84.00 96.55 72.73 94.29 97.83 88.24 90.48 75.00 K jcn_only_AA tra2,I_chr2R_10491279_10491488,REFI_chr2R_10491644_10491701 chr2R - chr2R_10491007_10491488 chr2R_10491431_10491488 chr2R_10491489_10491563;chr2R_10490853_10491006 10.19 9.09 22.22 4.29 3.85 7.14 21.05 19.35 15.00 2.17 22.22 19.59 NA 20.00 16.13 24.44 4.35 7.69 16.13 8.91 21.21 12.70 7.59 18.97 10.00 9.09 6.00 7.14 6.25 9.46 12.50 16.67 5.70 NA 8.47 5.56 5.75 1.69 5.68 9.63 12.77 14.56 13.64 10.64 11.00 14.02 14.08 10.19 9.80 10.29 13.85 22.50 6.90 4.05 28.12 7.58 10.77 6.85 K intron_retention cmet chr2L - chr2L_11262181_11262243 chr2L_11262180_11262181;chr2L_11262243_11262244 chr2L_11262063_11262180;chr2L_11262244_11262420 0.00 0.00 0.00 5.77 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention noncoding_20850,CG11093,RF_chr4_983355_984342 chr4 - chr4_983355_983859 chr4_983354_983355;chr4_983859_983860 chr4_983255_983354;chr4_983860_983907 29.81 30.00 31.82 39.66 33.33 26.32 33.33 35.29 23.88 NA 77.78 45.45 27.59 48.15 24.14 36.76 46.67 20.00 26.32 28.12 NA 16.67 18.18 15.79 NA 31.25 14.29 NA NA 40.00 30.00 15.00 15.79 29.63 25.00 NA NA 25.00 NA 48.00 36.84 42.55 28.57 26.67 26.32 32.00 25.00 33.33 34.29 37.50 14.29 33.33 22.73 NA 31.25 36.36 15.56 29.41 K jcn_only_AD katanin-60 chr3R - chr3R_1056937_1057778 chr3R_1056937_1057627 chr3R_1056715_1056936;chr3R_1057779_1057940 0.00 0.00 0.00 2.70 4.55 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 7.14 2.70 0.00 NA 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 3.57 K intron_retention sli,RI_chr2R_11794739_11809143 chr2R - chr2R_11761183_11761827 chr2R_11761182_11761183;chr2R_11761827_11761828 chr2R_11761040_11761182;chr2R_11761828_11761954 3.08 2.78 3.51 2.74 2.17 0.00 0.00 4.84 3.08 3.42 0.00 3.08 6.38 5.71 0.00 0.00 6.06 2.04 0.00 3.36 5.26 6.67 0.88 3.49 3.12 5.71 0.00 6.12 2.82 5.00 5.56 0.00 3.19 2.56 0.00 3.85 2.99 3.70 3.68 3.39 0.00 3.31 0.00 3.49 2.44 5.56 2.70 5.26 1.19 9.62 0.00 6.00 1.80 0.00 4.44 0.00 0.00 2.60 K intron_retention Ank,RI_chr4_142397_142478,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_142426_142478 chr4_142425_142426;chr4_142478_142479 chr4_142310_142425;chr4_142479_142578 0.00 1.18 0.00 0.00 0.00 0.00 2.47 1.49 0.00 0.00 0.00 0.00 0.00 2.27 0.00 1.37 2.04 1.37 1.09 2.16 0.00 0.00 0.00 0.00 0.00 0.00 2.47 NA 0.00 0.00 2.11 NA 0.00 0.74 0.00 0.00 1.64 0.00 0.00 1.45 NA 2.61 2.99 0.00 NA 0.00 0.00 0.00 0.62 0.00 1.54 2.17 0.00 NA 0.96 0.00 0.00 0.00 K intron_retention CG2909 chrX + chrX_10222106_10222444 chrX_10222105_10222106;chrX_10222444_10222445 chrX_10221099_10222105;chrX_10222445_10223021 0.00 0.00 0.00 4.17 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention dco,RI_chr3R_26883651_26886096,I_chr3R_26884350_26886671,I_chr3R_26884350_26886791,RI_chr3R_26884365_26886096,I_chr3R_26884365_26886798 chr3R - chr3R_26886187_26886798 chr3R_26886186_26886187;chr3R_26886798_26886799 chr3R_26886097_26886186;chr3R_26886799_26886891 9.68 9.86 10.53 14.29 12.73 7.50 11.40 14.29 8.04 4.44 2.82 13.46 12.33 11.59 10.45 11.11 9.68 8.22 10.00 6.53 8.57 8.42 6.67 11.59 8.89 10.94 14.06 12.00 15.38 5.51 6.90 9.52 8.15 11.76 12.07 9.46 6.60 10.00 15.09 9.76 13.56 11.54 12.73 8.85 9.21 7.08 5.49 7.24 13.56 9.43 13.51 10.53 8.33 5.26 6.74 4.60 7.78 3.21 K alternative_acceptor CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1666133_1670219 chr2R_1666219_1670219 chr2R_1670220_1670281;chr2R_1666119_1666132 100.00 95.00 100.00 100.00 92.86 100.00 97.50 100.00 97.92 100.00 100.00 97.62 100.00 96.15 95.24 97.92 100.00 100.00 100.00 97.78 100.00 100.00 94.74 100.00 100.00 92.86 100.00 NA 100.00 95.00 100.00 100.00 100.00 92.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.35 100.00 100.00 100.00 97.62 93.33 97.87 96.61 100.00 95.83 100.00 100.00 100.00 100.00 100.00 94.44 98.04 K intron_retention CG4957,CG31873 chr2L + chr2L_10269320_10269375 chr2L_10269319_10269320;chr2L_10269375_10269376 chr2L_10268881_10269319;chr2L_10269376_10269550 0.00 NA NA 0.00 NA NA 4.55 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K alternative_donor CG4699 chr3R + chr3R_11624200_11624445;chr3R_11624190_11624445;chr3R_11624127_11624445 chr3R_11624133_11624445 chr3R_11624446_11624758;chr3R_11623809_11624126 9.09 2.50 5.00 17.19 24.39 18.18 3.64 12.07 16.25 3.85 11.11 9.86 2.78 10.81 13.21 13.16 10.81 10.71 8.89 8.05 5.88 9.09 1.79 9.68 8.33 17.07 5.45 1.79 9.09 10.59 13.64 15.52 20.77 14.75 6.78 7.02 8.70 10.64 5.97 1.59 2.86 8.33 7.50 9.43 4.26 9.09 2.70 19.87 12.77 10.00 4.08 6.25 2.33 15.62 9.62 5.41 11.76 26.45 K intron_retention CG1316 chr3L + chr3L_4286002_4286171 chr3L_4286001_4286002;chr3L_4286171_4286172 chr3L_4285847_4286001;chr3L_4286172_4286865 93.75 100.00 100.00 NA NA NA NA 100.00 100.00 NA NA 92.31 NA NA 100.00 100.00 NA 100.00 NA 88.24 NA NA 90.00 NA NA NA NA NA 62.96 100.00 100.00 90.00 90.00 93.75 NA NA NA NA 88.89 92.86 NA 90.91 100.00 NA 90.91 93.33 100.00 100.00 91.67 NA 87.50 NA NA NA 90.91 NA 100.00 94.44 K cassette klar,I_chr3L_462559_472609,RI_chr3L_517594_539898 chr3L - chr3L_451772_454108 chr3L_451772_452837;chr3L_453489_454108 chr3L_452838_453488 chr3L_451127_451771;chr3L_454109_454405 97.40 96.41 99.01 90.62 98.41 98.45 98.25 96.22 98.41 98.15 96.72 94.54 96.20 98.28 98.75 99.09 99.60 96.89 96.62 96.36 97.40 83.33 97.57 96.45 96.76 97.82 96.00 97.21 96.62 97.48 96.60 97.90 98.14 97.60 95.54 93.35 97.06 97.66 96.57 99.01 99.23 97.26 97.78 96.86 98.56 97.63 99.02 97.84 98.68 97.02 96.34 99.55 97.40 97.16 98.60 96.46 97.19 98.81 K jcn_only_AA CG5745,I_chr3R_16928870_16929143 chr3R + chr3R_16928641_16929149 chr3R_16928641_16929143 chr3R_16928445_16928640;chr3R_16929150_16929243 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 96.15 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 97.78 NA 100.00 100.00 100.00 100.00 93.55 100.00 97.06 100.00 100.00 100.00 98.28 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K cassette Ctr1A,I_chrX_6558480_6559032 chrX + chrX_6559720_6560882 chrX_6559720_6560272;chrX_6560303_6560882 chrX_6560273_6560302 chrX_6559472_6559719;chrX_6560883_6561458 5.00 3.12 1.79 12.24 3.85 5.77 6.35 1.19 8.33 4.76 4.08 8.43 9.38 6.82 5.88 3.64 4.65 4.88 5.41 6.11 2.27 7.89 4.41 7.23 12.82 8.00 5.88 28.21 5.88 6.12 3.92 8.33 4.05 4.71 2.27 8.33 4.58 5.63 3.91 6.00 5.88 2.22 3.45 9.52 3.23 9.38 2.13 8.00 4.11 3.49 4.35 6.67 1.59 5.00 5.56 4.62 1.98 4.46 K jcn_only_AA CG5510 chr3R - chr3R_19994963_19995036 chr3R_19994969_19995036 chr3R_19995037_19995105;chr3R_19994900_19994962 100.00 100.00 99.60 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.76 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.29 100.00 100.00 100.00 100.00 99.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.51 100.00 99.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.43 100.00 K intron_retention CG6928 chr3L + chr3L_12000501_12000715 chr3L_12000500_12000501;chr3L_12000715_12000716 chr3L_12000321_12000500;chr3L_12000716_12001156 6.12 0.00 5.56 0.00 NA NA 0.00 13.04 7.14 NA NA 7.69 NA 15.38 NA 11.76 NA NA 0.00 4.76 NA NA 0.00 20.00 NA 0.00 0.00 15.38 NA NA NA NA NA NA NA NA NA 13.33 NA 0.00 NA 5.56 NA 9.52 NA 11.11 NA NA 0.00 13.33 15.00 NA NA 6.67 NA NA 4.76 NA K alternative_acceptor Keap1 chr3R - chr3R_12902225_12902298 chr3R_12902247_12902298 chr3R_12902299_12902615;chr3R_12901967_12902224 23.77 33.33 16.67 16.67 NA 12.50 23.53 12.50 24.00 15.91 NA 23.33 NA 25.00 13.04 17.65 23.08 20.00 NA 18.92 27.27 21.92 27.50 21.43 29.17 13.33 21.43 21.05 28.57 26.67 31.58 30.43 33.33 13.64 24.00 32.14 30.00 31.82 31.71 24.14 26.67 18.52 7.69 29.63 17.95 25.00 16.67 22.73 26.09 19.05 29.41 28.57 25.00 NA 16.67 30.77 20.00 24.32 K intron_retention CG18659,E_chr2R_5011363_5019110,I_chr2R_5016147_5016997 chr2R - chr2R_5015816_5015875 chr2R_5015815_5015816;chr2R_5015875_5015876 chr2R_5015762_5015815;chr2R_5015876_5016146 33.33 32.08 45.45 17.86 28.26 30.43 35.59 39.29 26.47 50.00 35.90 27.85 38.89 21.62 40.00 32.61 34.00 31.71 37.50 35.11 39.02 38.03 28.75 27.40 52.27 56.41 44.74 34.00 53.12 32.61 38.30 33.33 23.33 31.67 40.00 34.69 20.88 26.09 24.44 32.32 63.33 32.89 28.57 30.65 33.33 38.30 38.64 52.00 36.99 19.64 28.41 33.33 29.63 28.57 36.96 26.67 20.00 51.72 K jcn_only_AD eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341925_20342041;chr3L_20341636_20342041;chr3L_20341509_20342041;chr3L_20341486_20342041;chr3L_20341522_20342041;chr3L_20341751_20342041;chr3L_20341530_20342041;chr3L_20341629_20342041;chr3L_20341598_20342041;chr3L_20341759_20342041 chr3L_20341865_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.79 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 NA 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention Ca-P60A,RI_chr2R_19820338_19820541,I_chr2R_19820338_19821424,CEI_chr2R_19820338_19821830,I_chr2R_19820338_19823289 chr2R - chr2R_19820338_19820817 chr2R_19820337_19820338;chr2R_19820817_19820818 chr2R_19820238_19820337;chr2R_19820818_19820969 98.72 100.00 98.72 97.25 96.88 100.00 100.00 99.17 99.36 97.62 100.00 99.20 98.61 100.00 100.00 100.00 97.67 97.78 100.00 97.33 100.00 96.55 99.04 98.78 98.04 100.00 99.00 95.74 98.36 100.00 100.00 97.06 99.15 100.00 100.00 98.04 97.30 97.67 98.81 97.65 97.78 99.24 98.04 100.00 97.22 98.08 97.67 98.72 99.09 97.78 100.00 100.00 96.88 94.74 97.47 96.88 97.73 98.39 K intron_retention Cp110,I_chrX_21890195_21895316,I_chrX_21900456_21904601 chrX + chrX_21886363_21887237 chrX_21886362_21886363;chrX_21887237_21887238 chrX_21884923_21886362;chrX_21887238_21887471 23.08 NA 25.00 NA NA 6.67 NA NA 20.00 NA NA 30.00 NA 16.67 NA 23.53 NA 15.38 16.67 19.05 NA 50.00 NA 23.08 NA NA 30.77 NA NA NA 38.46 41.67 16.67 NA 21.43 30.77 NA 25.00 35.71 33.33 26.67 30.00 30.77 NA 18.75 12.50 NA 12.50 7.41 10.00 33.33 NA NA NA 20.00 14.29 30.77 16.67 K alternative_acceptor lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22817840_22817968;chr2L_22817840_22817891 chr2L_22817840_22817943 chr2L_22817740_22817839;chr2L_22817969_22817982 2.56 4.26 1.85 2.27 5.71 7.32 3.30 3.88 2.34 5.00 2.78 2.06 1.75 1.67 1.96 1.12 7.55 2.50 5.08 5.69 3.70 3.77 1.79 2.33 2.33 2.33 2.00 4.17 3.85 5.26 4.17 0.00 0.00 0.94 2.56 6.25 6.52 2.63 2.33 1.59 0.00 4.63 2.00 0.00 5.56 2.70 2.94 2.38 0.92 2.86 0.00 2.50 3.70 5.26 1.49 2.78 6.25 0.00 K alternative_acceptor Ark,I_chr2R_12909344_12909416,RI_chr2R_12912984_12913058 chr2R + chr2R_12912984_12913058 chr2R_12912984_12913038 chr2R_12912884_12912983;chr2R_12913059_12913158 100.00 95.83 94.74 100.00 100.00 100.00 97.96 97.73 97.62 100.00 100.00 97.78 100.00 100.00 100.00 100.00 95.24 100.00 100.00 97.37 100.00 97.44 96.88 100.00 92.31 100.00 100.00 92.31 100.00 92.86 95.12 100.00 100.00 97.78 100.00 93.75 100.00 92.31 100.00 100.00 100.00 96.30 100.00 96.00 100.00 100.00 96.00 100.00 97.50 96.30 95.65 94.44 100.00 93.33 97.06 93.33 100.00 95.45 K intron_retention Liprin-alpha chr2L + chr2L_6727323_6727862 chr2L_6727322_6727323;chr2L_6727862_6727863 chr2L_6727194_6727322;chr2L_6727863_6728780 16.67 18.75 16.67 22.22 15.38 12.00 5.71 21.88 19.30 15.79 20.00 22.41 20.00 15.15 18.92 11.90 13.64 30.43 23.08 14.55 8.70 12.82 19.57 25.00 23.81 14.29 25.93 8.33 11.76 15.15 14.71 25.00 16.67 18.18 25.00 20.00 25.93 25.93 21.43 20.34 4.55 15.69 12.50 10.71 15.00 12.50 26.92 5.88 24.59 15.79 20.51 29.17 13.33 NA 10.00 22.22 11.11 11.54 N jcn_only_AD CG8229,CG33199 chr2R - chr2R_4836447_4838210;chr2R_4836447_4837350 chr2R_4836447_4836515 chr2R_4835619_4836446;chr2R_4838211_4838296 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.94 K alternative_acceptor CG6439,RI_chr3R_17844601_17844713 chr3R - chr3R_17844550_17844713 chr3R_17844601_17844713 chr3R_17844714_17844813;chr3R_17844502_17844549 0.00 0.00 0.00 1.92 0.00 2.13 3.39 1.89 0.93 0.00 0.00 1.09 0.00 0.00 0.00 0.00 2.86 0.00 0.00 1.42 0.00 4.76 0.00 1.59 0.00 0.00 0.00 0.00 1.67 1.85 2.13 0.00 0.00 1.37 0.00 0.00 0.00 1.72 0.00 0.00 1.54 0.00 0.00 0.00 1.06 0.00 0.00 1.57 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor I_chr2R_17169674_17170491,CG10069,I_chr2R_17169897_17170495,I_chr2R_17170432_17170491,I_chr2R_17171765_17171886 chr2R + chr2R_17170432_17170491;chr2R_17170336_17170491;chr2R_17169885_17170491;chr2R_17170070_17170491 chr2R_17169897_17170491 chr2R_17170492_17170591;chr2R_17169869_17169884 80.77 75.00 81.82 78.57 86.36 81.25 54.05 61.36 76.47 90.00 80.00 84.62 74.07 76.92 76.67 73.81 76.92 73.91 80.95 81.25 78.26 77.36 80.56 85.71 83.33 75.00 78.79 80.00 84.62 82.76 77.78 83.33 82.50 74.07 79.17 72.73 86.67 87.10 84.44 83.10 75.86 82.14 69.57 80.77 79.17 82.76 86.96 85.00 76.36 76.19 83.33 89.66 81.82 90.91 73.53 83.33 82.61 82.05 K jcn_only_AD CG12162,I_chr3R_1293876_1293924,I_chr3R_1294319_1294410 chr3R + chr3R_1294319_1294410 chr3R_1294352_1294410 chr3R_1294411_1294510;chr3R_1294219_1294318 100.00 98.44 100.00 100.00 100.00 100.00 100.00 98.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 97.89 100.00 100.00 98.41 98.61 100.00 100.00 100.00 100.00 100.00 100.00 97.73 98.63 100.00 100.00 100.00 94.87 100.00 98.21 98.95 98.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.01 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 97.06 K intron_retention san,RI_chr2R_7248338_7248430 chr2R + chr2R_7248338_7248463 chr2R_7248337_7248338;chr2R_7248463_7248464 chr2R_7248238_7248337;chr2R_7248464_7248530 0.00 0.00 0.00 0.00 1.82 0.00 3.23 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 1.89 6.60 10.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.36 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Lk6 chr3R - chr3R_7581969_7582034 chr3R_7581968_7581969;chr3R_7582034_7582035 chr3R_7581457_7581968;chr3R_7582035_7582214 0.74 0.40 0.32 0.56 1.15 0.82 0.66 0.61 0.81 0.69 0.39 0.63 0.62 0.56 0.63 0.73 0.56 1.18 0.61 0.71 0.66 6.04 1.15 1.54 1.17 0.63 1.09 1.87 8.76 0.50 1.82 1.26 1.34 0.91 1.83 0.76 1.19 1.17 0.91 1.33 1.77 0.70 0.66 1.37 0.00 1.57 0.74 1.39 0.46 1.64 1.17 1.84 0.00 0.40 0.44 0.60 0.45 0.42 K intron_retention akirin,I_chr3L_7363173_7364806,I_chr3L_7363177_7364806,I_chr3L_7363177_7364831,I_chr3L_7363211_7364831,I_chr3L_7363731_7364806,I_chr3L_7364126_7364806,RI_chr3L_7364737_7364806 chr3L + chr3L_7363169_7364831 chr3L_7363168_7363169;chr3L_7364831_7364832 chr3L_7363111_7363168;chr3L_7364832_7364906 88.98 89.09 95.00 97.19 90.00 94.12 95.14 93.10 90.15 83.93 95.45 90.66 88.24 84.62 92.24 84.08 91.35 90.00 90.00 92.31 91.43 82.14 84.27 87.39 89.55 94.44 90.55 84.78 93.75 74.23 85.34 77.50 48.81 92.15 88.31 93.33 87.18 87.06 85.71 82.35 91.53 90.65 92.39 93.29 91.23 86.00 88.89 85.00 86.57 75.00 88.98 88.24 86.30 88.37 92.91 86.36 85.86 83.56 K intron_retention CG34394,I_chr2L_3365674_3365965 chr2L - chr2L_3363196_3363306 chr2L_3363195_3363196;chr2L_3363306_3363307 chr2L_3362999_3363195;chr2L_3363307_3363437 0.00 11.76 8.33 13.33 4.35 0.00 0.00 5.88 6.67 3.45 0.00 0.00 0.00 8.33 5.56 1.41 NA 9.38 0.00 6.94 0.00 5.22 0.00 0.00 0.00 6.67 0.00 0.00 12.50 0.00 0.00 0.00 6.45 2.38 0.00 6.25 0.00 0.00 4.17 11.36 0.00 11.63 0.00 3.45 0.00 0.00 0.00 2.56 7.58 0.00 0.00 0.00 NA 0.00 2.63 0.00 0.00 0.00 K intron_retention CG4199,I_chrX_1962457_1964222 chrX - chrX_1965614_1965671 chrX_1965613_1965614;chrX_1965671_1965672 chrX_1965393_1965613;chrX_1965672_1965832 48.00 NA NA 75.00 NA NA 50.00 52.63 40.00 NA NA 68.75 NA NA 55.56 NA NA 50.00 38.46 48.00 NA 73.24 53.33 35.71 NA 58.33 58.82 40.00 41.18 NA 53.85 42.86 41.38 52.17 53.85 82.35 NA NA NA 44.44 48.00 26.92 NA NA 46.67 33.33 NA 46.15 40.91 NA 60.00 60.00 NA NA NA NA 47.06 43.48 K intron_retention Cdc27,MED4 chr3L - chr3L_7241535_7241603 chr3L_7241534_7241535;chr3L_7241603_7241604 chr3L_7238644_7241534;chr3L_7241604_7241679 0.00 0.00 0.00 0.00 0.00 0.00 9.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 7.69 13.64 6.82 16.67 15.38 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 2.04 0.00 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10732,I_chr3L_13438999_13439071 chr3L + chr3L_13438740_13438838 chr3L_13438739_13438740;chr3L_13438838_13438839 chr3L_13437468_13438739;chr3L_13438839_13438998 92.98 93.33 87.50 97.14 89.47 95.00 93.33 86.67 97.87 88.00 93.75 92.31 85.71 94.74 94.74 87.50 93.33 94.74 94.44 94.00 88.89 97.87 96.08 97.50 97.44 100.00 94.87 84.21 92.59 90.24 86.36 100.00 90.00 88.57 96.55 97.56 91.38 90.70 93.44 92.98 96.97 90.70 94.74 86.05 83.72 94.87 92.00 94.44 89.19 97.62 91.67 84.00 86.21 92.31 85.71 84.62 87.50 92.98 K jcn_only_AD sxc,I_chr2R_1203985_1205289,I_chr2R_1208121_1213310,I_chr2R_1213177_1213308 chr2R + chr2R_1194785_1194918 chr2R_1194858_1194918 chr2R_1194919_1195157;chr2R_1194775_1194784 86.11 NA NA 95.83 NA NA 93.22 91.30 77.78 NA NA NA 86.11 NA NA 69.23 NA NA 81.82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 73.91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 86.67 NA NA NA NA NA NA NA NA NA N multi_cassette CG1161,RI_chr3R_1181273_1181459,I_chr3R_1182079_1182146 chr3R + chr3R_1181273_1182146 chr3R_1181273_1181515;chr3R_1181665_1181724;chr3R_1181851_1181899;chr3R_1181959_1182146 chr3R_1181516_1181664;chr3R_1181725_1181850;chr3R_1181900_1181958 chr3R_1181173_1181272;chr3R_1182147_1182246 100.00 100.00 100.00 100.00 100.00 100.00 86.44 100.00 91.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.20 100.00 89.86 84.75 86.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 67.11 100.00 100.00 100.00 100.00 100.00 100.00 89.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG14614,REI_chrX_21856047_21856229,RI_chrX_21856896_21857109 chrX - chrX_21856896_21857109;chrX_21857041_21857109 chrX_21856924_21857109 chrX_21857110_21857209;chrX_21856796_21856895 20.94 18.18 30.77 16.33 16.67 16.13 29.41 19.64 17.05 6.67 17.95 8.45 25.71 18.42 30.43 12.50 24.24 28.95 17.14 14.71 27.03 31.03 25.49 10.26 16.67 21.95 NA 22.22 20.83 29.41 28.89 20.00 10.53 8.00 13.64 32.14 25.53 36.11 26.67 12.90 NA 15.28 23.33 33.33 27.78 30.43 13.79 20.00 17.24 22.73 30.00 30.77 14.29 23.53 17.07 26.09 21.05 NA K jcn_only_AA CG13384 chr2L + chr2L_8384896_8385002 chr2L_8384896_8384996 chr2L_8384754_8384895;chr2L_8385003_8385091 97.71 98.97 97.27 98.25 97.99 95.56 97.12 98.60 98.62 97.75 98.03 97.31 95.71 97.12 98.31 98.45 97.43 97.51 98.12 97.38 97.92 97.61 97.58 99.12 98.11 98.30 95.96 93.12 98.75 97.40 96.96 96.62 99.54 96.76 95.78 97.88 98.03 95.85 97.71 98.25 96.35 96.93 98.72 97.20 96.88 97.73 97.31 96.04 98.30 98.90 97.78 95.60 99.15 98.14 96.88 98.18 94.86 98.10 K intron_retention CG9945,CG16742 chr2R + chr2R_16507741_16507942 chr2R_16507740_16507741;chr2R_16507942_16507943 chr2R_16507585_16507740;chr2R_16507943_16508049 0.00 0.00 NA 3.03 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 2.70 NA NA NA 0.00 NA 4.00 0.00 0.00 0.00 NA 0.00 9.09 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 NA 2.94 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.06 NA 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention Rpn5 chr3R + chr3R_1615349_1615402 chr3R_1615348_1615349;chr3R_1615402_1615403 chr3R_1615211_1615348;chr3R_1615403_1615415 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 62.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention svr,RI_chrX_421417_421591 chrX + chrX_396473_396517 chrX_396472_396473;chrX_396517_396518 chrX_396320_396472;chrX_396518_396799 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Pdk chr2R + chr2R_5319684_5319739 chr2R_5319683_5319684;chr2R_5319739_5319740 chr2R_5319476_5319683;chr2R_5319740_5319930 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 19.05 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RpS3A,I_chr4_87364_87465,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87533_87673;chr4_87533_87717;chr4_87533_87757 chr4_87533_87769 chr4_87466_87532;chr4_87770_87817 0.05 0.05 0.03 0.06 0.14 0.03 0.05 0.07 0.07 0.00 0.04 0.03 0.03 0.00 0.03 0.08 NA 0.04 0.05 0.07 0.03 0.05 0.07 0.06 0.06 0.03 0.00 0.06 0.00 0.18 0.03 0.16 0.04 0.05 0.07 NA NA 0.12 0.05 0.04 0.00 0.01 0.04 NA 0.14 0.09 0.09 0.09 0.01 0.13 0.00 NA 0.05 0.00 0.07 0.00 0.08 0.16 K intron_retention CG30345,I_chr2R_5037343_5037395 chr2R + chr2R_5038077_5038139 chr2R_5038076_5038077;chr2R_5038139_5038140 chr2R_5037941_5038076;chr2R_5038140_5038466 0.00 NA NA 5.56 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA K jcn_only_AA I_chr2L_114992_156735,RI_chr2L_114992_155545,RI_chr2L_114992_155566,I_chr2L_114992_155637,I_chr2L_114992_156175,RI_chr2L_155430_155637,CG11455,CG3436 chr2L + chr2L_155430_155566;chr2L_155430_155637 chr2L_155430_155493 chr2L_155424_155429;chr2L_155638_155645 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.74 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 1.69 0.00 0.78 0.00 NA 1.92 1.85 0.00 2.63 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 K intron_retention CG9948 chr3L + chr3L_6949263_6949332 chr3L_6949262_6949263;chr3L_6949332_6949333 chr3L_6949194_6949262;chr3L_6949333_6949497 93.33 91.67 90.00 96.55 90.00 94.44 90.00 95.12 91.43 100.00 93.33 96.88 94.12 100.00 95.24 96.77 93.33 93.33 88.46 88.89 92.31 94.44 100.00 87.50 91.67 94.44 100.00 NA 100.00 100.00 94.74 100.00 100.00 86.67 93.75 92.31 NA 90.00 100.00 95.65 90.00 88.24 92.86 87.50 90.91 95.45 94.44 86.67 97.56 95.24 85.71 88.89 89.47 92.31 94.74 95.00 92.59 86.21 K alternative_acceptor drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389400_9390195;chr2R_9389714_9390195;chr2R_9389430_9390195 chr2R_9389597_9390195 chr2R_9390196_9390251;chr2R_9389318_9389399 83.78 81.69 86.32 81.18 84.38 84.42 81.71 84.80 85.78 86.27 84.06 82.76 86.87 81.19 83.49 82.76 82.72 83.95 86.23 84.78 82.05 79.55 83.84 76.32 81.82 87.96 80.81 78.46 87.25 82.02 85.25 85.00 75.78 86.49 83.78 87.18 81.36 84.09 83.33 85.40 81.18 84.53 75.86 80.52 85.96 84.62 77.94 87.94 82.71 81.25 83.33 80.95 86.27 86.36 84.50 80.00 83.53 86.84 K intron_retention Srp14 chr3R + chr3R_16406044_16406111 chr3R_16406043_16406044;chr3R_16406111_16406112 chr3R_16405971_16406043;chr3R_16406112_16406212 1.11 0.00 2.11 6.67 0.00 3.49 12.09 1.39 3.23 0.00 7.55 2.53 7.27 0.00 2.41 1.06 0.00 0.00 2.78 1.11 3.08 0.00 0.00 0.00 6.02 19.74 3.49 1.98 6.56 0.00 3.54 0.00 0.00 0.91 0.92 5.49 0.00 0.00 1.61 0.70 5.30 2.17 0.00 2.99 0.86 1.36 0.00 0.51 2.72 0.98 0.00 0.00 0.49 0.00 0.00 2.10 2.19 1.17 K intron_retention AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9006273_9007675 chrX_9006272_9006273;chrX_9007675_9007676 chrX_9006196_9006272;chrX_9007676_9007775 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 2.34 0.00 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 2.25 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 1.79 0.00 0.00 0.00 0.00 2.63 1.79 0.00 0.00 K intron_retention Zyx102EF,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1078199_1078263 chr4_1078198_1078199;chr4_1078263_1078264 chr4_1078191_1078198;chr4_1078264_1078326 80.00 NA NA 92.59 NA 66.67 76.92 81.25 84.62 NA NA 77.78 NA NA NA 92.86 NA NA NA 69.23 NA NA 71.43 NA NA 88.89 90.91 NA NA NA 70.00 NA NA 82.35 NA NA NA NA NA 77.78 NA 64.71 NA NA NA 80.00 NA NA 82.35 NA NA NA 80.00 NA NA NA 70.00 100.00 K jcn_only_AD nrv2,I_chr2L_6791842_6794492,I_chr2L_6793397_6794492,I_chr2L_6793405_6793916,I_chr2L_6793405_6794499,I_chr2L_6793684_6794492 chr2L - chr2L_6793405_6794492;chr2L_6793405_6794316;chr2L_6793405_6794551 chr2L_6793405_6794328 chr2L_6793305_6793404;chr2L_6794552_6794592 0.00 5.00 0.00 3.12 0.00 0.00 0.00 0.00 3.19 0.00 4.76 0.00 0.00 0.00 2.63 2.20 0.00 0.00 4.76 1.83 0.00 2.27 0.00 0.00 3.45 0.00 2.27 NA 0.00 0.00 0.00 3.57 0.00 7.46 4.08 3.70 1.41 0.00 0.00 1.79 0.00 5.88 0.00 0.00 0.00 2.41 0.00 0.00 1.03 4.88 3.33 0.00 0.00 0.00 1.45 3.57 4.29 4.05 K intron_retention CG7546 chr3L + chr3L_7504338_7504431 chr3L_7504337_7504338;chr3L_7504431_7504432 chr3L_7504269_7504337;chr3L_7504432_7504542 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG1265,I_chr3L_4255296_4255550 chr3L + chr3L_4255296_4255353;chr3L_4255296_4255550;chr3L_4255296_4255457 chr3L_4255296_4255609 chr3L_4255196_4255295;chr3L_4255610_4255650 96.08 98.31 96.67 93.48 97.44 97.78 94.44 97.40 96.08 93.94 97.30 97.65 87.88 97.30 93.18 92.96 97.62 96.08 95.65 96.99 97.73 94.92 96.88 98.70 100.00 92.68 95.45 100.00 89.66 97.30 92.16 96.88 92.00 96.00 91.67 100.00 96.10 94.92 97.40 95.71 93.94 98.02 100.00 97.18 88.89 97.40 96.67 94.29 95.12 95.00 95.16 96.08 100.00 100.00 95.08 97.40 95.29 93.62 K alternative_donor CG10277,I_chr3R_2211939_2212057 chr3R + chr3R_2211921_2212057 chr3R_2211939_2212057 chr3R_2212058_2212157;chr3R_2211839_2211920 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.89 0.00 0.00 2.73 0.00 0.00 0.55 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 K intron_retention HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13176263_13179235 chrX_13176262_13176263;chrX_13179235_13179236 chrX_13176199_13176262;chrX_13179236_13179281 13.30 16.22 14.89 15.71 5.26 10.42 19.51 6.17 10.71 21.43 6.67 11.24 18.37 23.08 13.56 16.13 8.47 13.04 19.48 20.59 16.67 5.00 7.81 14.29 25.00 25.93 18.92 NA 22.58 12.77 17.72 4.35 8.47 16.96 19.35 21.62 6.67 6.45 0.00 5.26 17.95 11.24 21.67 2.70 15.38 15.25 0.00 20.88 15.13 3.85 12.77 11.76 8.33 10.53 10.14 0.00 0.00 19.35 K intron_retention CG5792,F_chr2L_12714547_12714695 chr2L - chr2L_12715530_12715893 chr2L_12715529_12715530;chr2L_12715893_12715894 chr2L_12715069_12715529;chr2L_12715894_12716011 0.00 0.00 NA 0.00 0.00 0.00 0.00 6.67 0.00 NA NA 8.33 NA 0.00 0.00 14.29 5.88 0.00 15.38 2.56 NA 0.00 0.00 4.55 NA 0.00 4.76 0.00 0.00 NA 0.00 NA 0.00 6.25 5.26 10.53 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 9.09 0.00 0.00 2.94 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 K intron_retention inaD,I_chr2R_18744912_18744978 chr2R - chr2R_18744917_18744978 chr2R_18744916_18744917;chr2R_18744978_18744979 chr2R_18744663_18744916;chr2R_18744979_18745069 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA 88.89 NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG1407,RI_chr2R_5918919_5919093,I_chr2R_5918925_5919213,RI_chr2R_5918952_5919084,RI_chr2R_5918952_5919093 chr2R - chr2R_5918925_5919084 chr2R_5918924_5918925;chr2R_5919084_5919085 chr2R_5918852_5918924;chr2R_5919085_5919090 62.50 61.54 50.00 58.33 53.33 56.25 54.55 61.90 66.67 NA 66.67 80.00 90.00 58.33 73.68 59.38 53.85 55.56 53.85 42.55 58.82 73.68 55.00 62.50 41.67 68.18 50.00 58.33 64.29 63.64 55.56 NA 66.67 55.56 64.29 90.00 66.67 63.64 50.00 85.19 72.73 64.29 60.00 87.50 80.00 64.29 64.29 70.00 54.05 72.73 52.63 64.29 50.00 75.00 54.17 75.00 57.89 83.33 K intron_retention drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9389751 chr2R_9389596_9389597;chr2R_9389751_9389752 chr2R_9389497_9389596;chr2R_9389752_9389851 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 96.43 100.00 97.06 98.25 100.00 96.15 100.00 100.00 96.00 96.67 94.74 97.50 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 96.67 100.00 95.65 98.78 100.00 100.00 96.30 100.00 100.00 97.50 100.00 97.14 100.00 K intron_retention yellow-c chr2L + chr2L_15036992_15037050 chr2L_15036991_15036992;chr2L_15037050_15037051 chr2L_15036935_15036991;chr2L_15037051_15037095 97.22 97.14 96.77 96.83 96.55 96.43 98.55 93.55 97.37 91.67 95.24 98.04 96.77 96.77 97.22 97.18 97.30 95.24 100.00 100.00 96.67 100.00 98.61 100.00 100.00 94.74 98.04 94.12 100.00 96.67 98.04 100.00 100.00 98.39 95.83 100.00 97.30 96.55 96.88 97.56 100.00 96.55 96.55 93.75 97.14 100.00 100.00 96.00 97.33 96.67 97.56 97.22 100.00 100.00 97.22 96.97 97.30 100.00 K intron_retention caz,RI_chrX_16183356_16185973 chrX + chrX_16186677_16186918 chrX_16186676_16186677;chrX_16186918_16186919 chrX_16186228_16186676;chrX_16186919_16187489 0.51 0.55 0.78 0.80 0.34 0.69 0.60 1.07 0.39 0.00 0.00 0.91 0.00 1.69 0.58 1.63 0.45 0.71 1.74 0.43 0.00 0.27 0.54 1.17 0.50 0.00 1.96 0.91 1.05 0.20 0.21 0.42 0.22 0.93 0.62 0.28 0.35 0.15 0.51 0.65 0.44 0.37 0.40 0.50 0.15 0.51 0.72 0.24 1.13 0.66 1.13 0.65 0.26 0.32 0.62 0.74 0.90 0.16 K intron_retention CG5245,Pros25 chr3R + chr3R_8257383_8257467 chr3R_8257382_8257383;chr3R_8257467_8257468 chr3R_8257306_8257382;chr3R_8257468_8257723 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 K intron_retention I_chr3L_3223943_3224313,CG11505 chr3L + chr3L_3226540_3226876 chr3L_3226539_3226540;chr3L_3226876_3226877 chr3L_3226521_3226539;chr3L_3226877_3227705 13.96 14.29 NA 21.05 NA 0.00 19.23 13.16 12.50 NA NA 20.00 19.05 6.25 6.67 20.00 11.11 NA NA 11.76 NA 42.86 13.64 14.29 25.00 23.53 10.71 36.36 20.00 10.00 5.56 NA 17.39 22.22 NA 23.81 8.33 NA NA 10.64 NA 18.75 NA 0.00 NA NA NA 5.00 7.69 NA 6.67 NA NA NA 16.67 NA NA NA K intron_retention CG5382,CG5380 chr3R - chr3R_18190680_18190740 chr3R_18190679_18190680;chr3R_18190740_18190741 chr3R_18190245_18190679;chr3R_18190741_18190942 1.82 3.17 4.55 25.53 0.00 0.00 8.11 0.00 2.94 0.00 7.14 1.28 0.00 4.00 4.88 3.85 0.00 0.00 0.00 2.15 0.00 15.07 0.00 0.00 5.13 3.85 3.57 2.38 7.58 7.69 0.00 2.13 3.12 5.56 0.00 0.00 0.00 3.66 0.00 1.75 8.89 2.35 0.00 2.27 6.90 0.00 1.82 0.00 2.00 2.78 5.48 0.00 0.00 0.00 0.00 0.00 0.95 0.00 K intron_retention dmondo,I_chr2L_21289375_21289461,I_chr2L_21301528_21308287,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579 chr2L - chr2L_21289549_21289614 chr2L_21289548_21289549;chr2L_21289614_21289615 chr2L_21289462_21289548;chr2L_21289615_21289744 0.00 0.00 0.00 1.80 0.00 0.00 1.94 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA eIF5,I_chrX_15882955_15883078,RI_chrX_15883163_15883424,I_chrX_15883297_15883424,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15883360_15883424;chrX_15883163_15883424;chrX_15883302_15883424 chrX_15883143_15883424 chrX_15883425_15883509;chrX_15883079_15883142 9.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.09 K intron_retention ppk28 chrX + chrX_16701334_16701395 chrX_16701333_16701334;chrX_16701395_16701396 chrX_16700667_16701333;chrX_16701396_16701990 46.15 70.00 NA NA NA NA NA NA 47.37 NA NA NA NA NA NA NA NA 30.77 NA 40.00 NA NA 50.00 NA NA NA NA NA 70.00 NA 46.15 NA 46.15 53.33 NA NA NA NA 35.71 NA NA 36.84 NA 53.85 NA 58.33 NA 53.33 38.46 NA NA NA NA NA NA NA 45.45 45.45 K intron_retention pum,I_chr3R_4898752_4906279,I_chr3R_4989351_5039481 chr3R - chr3R_4906745_4982839 chr3R_4906744_4906745;chr3R_4982839_4982840 chr3R_4906280_4906744;chr3R_4982840_4983072 65.00 50.00 76.00 61.76 65.00 73.68 65.38 55.56 70.77 NA 45.83 67.39 68.42 73.91 68.18 81.82 60.71 76.47 72.22 63.16 57.14 NA 63.16 55.56 NA 74.07 60.00 NA NA 40.00 85.00 NA NA 65.00 69.23 NA 33.33 36.36 NA 55.00 NA 68.89 78.26 NA NA NA NA 57.14 66.67 NA 58.33 54.55 NA NA 73.08 NA NA NA K intron_retention CG10254 chr3R - chr3R_19515460_19515513 chr3R_19515459_19515460;chr3R_19515513_19515514 chr3R_19514728_19515459;chr3R_19515514_19515732 0.00 NA 0.00 0.00 0.00 0.00 0.00 6.25 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 4.17 NA NA NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA K jcn_only_AD smid,I_chr3L_7375166_7375310,I_chr3L_7375435_7375508 chr3L + chr3L_7375425_7375486 chr3L_7375435_7375486 chr3L_7375487_7375574;chr3L_7375335_7375424 100.00 98.20 100.00 100.00 100.00 100.00 100.00 100.00 99.55 100.00 100.00 99.41 100.00 98.51 100.00 98.80 100.00 100.00 100.00 99.50 100.00 100.00 100.00 100.00 100.00 98.85 99.25 100.00 100.00 100.00 100.00 100.00 99.14 100.00 98.25 100.00 99.40 99.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.00 100.00 99.36 100.00 100.00 98.11 98.11 100.00 100.00 97.53 98.88 100.00 K alternative_acceptor CG9799,I_chr3R_9213119_9213164 chr3R - chr3R_9213102_9213164 chr3R_9213119_9213164 chr3R_9213165_9213264;chr3R_9213019_9213101 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 1.37 0.00 1.33 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG17721,RI_chr3R_7061265_7061322 chr3R + chr3R_7061229_7061322 chr3R_7061265_7061322 chr3R_7061323_7061422;chr3R_7061165_7061228 12.20 12.20 11.76 15.15 4.76 8.33 7.32 20.00 19.15 14.58 9.52 12.20 4.76 13.04 12.90 8.70 13.64 12.50 6.25 16.67 16.00 14.81 1.89 6.90 8.82 0.00 5.56 7.14 19.35 13.64 9.09 18.18 NA 6.67 NA 16.67 7.69 14.71 15.38 9.09 14.29 10.26 8.33 12.50 13.33 14.04 15.15 14.71 16.13 9.09 9.09 6.25 3.03 15.38 13.04 9.62 6.67 17.86 K jcn_only_AA CG1418,RI_chr2R_5852050_5852138 chr2R - chr2R_5852050_5852138 chr2R_5852087_5852138 chr2R_5852139_5852207;chr2R_5852030_5852049 100.00 100.00 100.00 100.00 100.00 100.00 98.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.98 100.00 100.00 100.00 99.43 100.00 100.00 98.84 100.00 98.63 100.00 100.00 100.00 100.00 98.73 98.68 100.00 100.00 100.00 98.77 100.00 100.00 98.51 100.00 99.57 99.44 100.00 100.00 100.00 100.00 99.60 100.00 100.00 99.13 100.00 98.99 100.00 100.00 98.92 100.00 100.00 100.00 99.68 K intron_retention qkr58E-3,I_chr2R_18300846_18301656 chr2R - chr2R_18297902_18298043 chr2R_18297901_18297902;chr2R_18298043_18298044 chr2R_18297816_18297901;chr2R_18298044_18298133 0.00 3.85 0.00 0.93 0.00 0.00 0.00 0.00 0.85 0.00 0.00 4.21 5.00 0.00 2.99 0.00 0.00 2.13 1.89 0.00 0.00 2.08 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.62 0.00 0.00 1.27 NA 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG7188 chr3L - chr3L_8300481_8300893 chr3L_8300481_8300692;chr3L_8300833_8300893 chr3L_8300693_8300832 chr3L_8300192_8300480;chr3L_8300894_8301064 2.29 1.24 4.10 4.40 1.47 1.75 2.29 2.79 2.82 0.78 2.54 5.22 3.79 2.68 3.57 1.22 2.68 1.15 4.20 2.04 1.10 2.80 0.86 1.49 2.42 1.46 2.51 2.88 2.08 1.75 4.58 4.55 3.51 2.66 0.93 0.99 1.67 0.67 2.82 2.42 2.86 3.26 1.83 2.83 4.82 2.31 1.79 4.44 1.72 1.39 1.40 1.38 1.59 1.92 2.13 1.97 1.81 2.46 K jcn_only_AD cnn,I_chr2R_9333096_9336723,I_chr2R_9333096_9336812,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9334834_9336723;chr2R_9334834_9336501;chr2R_9334834_9336719 chr2R_9334834_9336812 chr2R_9334744_9334833;chr2R_9336813_9336819 19.62 NA NA 12.90 NA NA 15.38 18.92 16.67 NA NA 24.14 39.13 NA NA 17.14 NA NA NA 25.64 NA 34.21 20.00 NA NA NA 27.59 19.23 NA 14.29 NA NA 27.59 NA NA 29.63 19.23 NA NA 15.38 NA 15.00 NA 20.00 NA 39.13 NA 24.00 6.06 33.33 3.85 NA NA NA NA NA NA NA K intron_retention CG9855,I_chr3R_223384_223429 chr3R - chr3R_222779_222833 chr3R_222778_222779;chr3R_222833_222834 chr3R_222582_222778;chr3R_222834_223362 7.27 7.69 8.57 8.93 3.85 0.00 7.41 5.77 9.30 5.00 0.00 5.45 0.00 0.00 9.09 8.33 6.25 2.94 8.00 6.78 12.00 4.76 4.88 7.27 3.03 0.00 7.27 3.85 8.57 5.00 17.39 6.67 0.00 10.87 0.00 5.71 11.54 11.11 1.82 12.20 12.50 6.45 4.55 10.00 9.52 8.51 11.43 2.38 10.20 18.42 4.26 7.41 10.71 6.98 2.44 11.63 9.62 15.38 K jcn_only_AD msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585739_2586265;chr3L_2585739_2586402;chr3L_2585739_2586413 chr3L_2585739_2586036 chr3L_2585639_2585738;chr3L_2586414_2586502 4.83 6.93 4.21 4.27 2.61 5.24 10.08 3.17 5.01 7.35 3.70 3.91 2.41 4.74 3.49 3.60 5.67 6.36 3.38 2.05 6.90 3.87 5.83 6.30 4.44 5.61 7.02 7.25 8.12 4.83 2.55 4.00 3.19 6.44 5.45 3.61 8.73 5.07 2.63 8.20 5.84 2.94 3.82 16.02 3.60 5.78 4.55 6.37 3.19 7.14 2.86 4.84 8.00 2.00 4.90 4.50 9.62 3.27 K intron_retention I_chr3R_7040337_7041144,RpS25,I_chr3R_7041333_7041414,I_chr3R_7041347_7041556,RI_chr3R_7044164_7044221 chr3R - chr3R_7041092_7041144 chr3R_7041091_7041092;chr3R_7041144_7041145 chr3R_7040952_7041091;chr3R_7041145_7041244 99.42 98.29 97.71 99.82 100.00 99.32 98.83 99.78 99.33 98.41 98.88 99.09 99.16 100.00 100.00 99.42 99.51 98.83 99.63 99.69 98.75 99.51 100.00 100.00 100.00 100.00 97.87 100.00 100.00 97.59 99.62 100.00 99.10 100.00 98.86 100.00 98.73 98.04 98.65 99.53 99.34 99.25 99.42 100.00 100.00 98.91 96.97 99.32 100.00 100.00 98.80 98.57 99.41 96.88 100.00 99.22 99.42 100.00 K intron_retention CG4662 chr3R + chr3R_15677641_15677744 chr3R_15677640_15677641;chr3R_15677744_15677745 chr3R_15677554_15677640;chr3R_15677745_15678147 0.00 0.00 0.00 0.00 NA 0.00 13.33 0.00 3.23 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 3.70 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K alternative_acceptor cerv,RI_chrX_15471783_15471843 chrX - chrX_15471783_15471843 chrX_15471799_15471843 chrX_15471844_15471943;chrX_15471683_15471782 61.82 NA NA NA NA NA 71.43 69.23 90.91 NA NA 66.67 NA NA NA 53.33 NA NA NA 77.78 NA NA 46.67 71.43 NA NA NA NA NA NA 18.75 NA NA 63.64 NA NA NA NA NA NA NA 53.33 NA NA NA 50.00 NA NA 66.67 45.45 87.50 NA NA 55.56 NA 60.00 41.67 NA K intron_retention CE_chrX_20766225_20927825,CG1518,snoRNA:Me28S-U3344a chrX - chrX_20923231_20923436 chrX_20923230_20923231;chrX_20923436_20923437 chrX_20922943_20923230;chrX_20923437_20923826 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.33 0.00 0.00 0.32 0.57 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention Pvr,I_chr2L_8226604_8228082,I_chr2L_8229001_8230124,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8226607_8228493 chr2L_8226606_8226607;chr2L_8228493_8228494 chr2L_8226458_8226606;chr2L_8228494_8229011 59.26 25.00 100.00 50.00 100.00 100.00 60.00 65.79 52.00 NA NA 70.00 46.88 100.00 65.52 100.00 100.00 100.00 100.00 100.00 47.06 100.00 33.33 43.59 55.56 100.00 37.21 NA NA 43.48 32.43 NA 55.00 59.26 46.67 65.00 44.74 36.00 37.93 51.35 41.67 59.18 100.00 62.50 NA NA NA 100.00 68.63 35.00 53.85 40.00 NA NA 69.23 100.00 NA NA N cassette inaE chrX + chrX_13697884_13698155 chrX_13697884_13697941;chrX_13698084_13698155 chrX_13697942_13698083 chrX_13697359_13697883;chrX_13698156_13698260 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG32176,RI_chr3L_17427238_17427301 chr3L + chr3L_17427557_17429423 chr3L_17427556_17427557;chr3L_17429423_17429424 chr3L_17427494_17427556;chr3L_17429424_17429477 10.53 NA NA NA NA NA 28.57 NA 19.05 NA NA NA NA NA NA 5.88 NA NA NA 10.53 NA NA 0.00 NA NA NA NA NA NA NA 21.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA K cassette RhoGAP19D,EI_chrX_20347839_20348139,DMG4-MB6.chrX.37.001,RI_chrX_20380495_20381649 chrX - chrX_20347839_20348292;chrX_20347836_20348292 chrX_20347836_20348139,chrX_20347839_20348139;chrX_20348215_20348292 chrX_20348140_20348214 chrX_20347739_20347835;chrX_20348293_20348380 12.50 13.04 13.04 6.06 11.76 13.04 10.71 10.71 14.63 31.82 12.50 12.50 7.14 14.29 12.50 21.74 18.18 19.05 NA 10.42 6.25 13.64 8.51 9.68 14.29 5.56 13.95 17.39 11.11 7.41 11.11 NA 22.22 11.43 13.04 10.00 9.80 9.68 11.76 25.71 NA 14.89 17.65 17.14 NA NA NA 12.50 9.52 NA 15.15 9.09 7.69 NA 17.39 NA NA 6.25 K intron_retention Pfk,I_chr2R_5999081_6000140,E_chr2R_6001157_6001630 chr2R + chr2R_6004163_6004241 chr2R_6004162_6004163;chr2R_6004241_6004242 chr2R_6003320_6004162;chr2R_6004242_6004330 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention B52,F_chr3R_9488762_9491174,E_chr3R_9488770_9491174 chr3R + chr3R_9488127_9488691 chr3R_9488126_9488127;chr3R_9488691_9488692 chr3R_9488019_9488126;chr3R_9488692_9488761 0.42 0.00 0.00 0.00 0.52 0.00 0.47 0.00 0.19 1.57 0.00 0.56 2.70 1.40 0.88 0.00 0.00 0.00 1.23 0.42 0.00 0.43 1.58 0.00 1.57 0.00 4.12 2.43 0.00 0.00 1.31 0.00 0.44 0.38 0.00 1.12 0.72 0.68 1.36 0.47 0.47 0.38 0.00 2.11 0.15 0.61 0.00 0.58 0.00 0.00 1.52 0.66 0.00 0.00 0.00 0.81 0.47 0.22 K intron_retention MB6.chr2R.pasa.5049,CG3589 chr2R + chr2R_20663273_20666834 chr2R_20663272_20663273;chr2R_20666834_20666835 chr2R_20663234_20663272;chr2R_20666835_20667451 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG3338,Psf2 chr2L - chr2L_4385260_4385315 chr2L_4385259_4385260;chr2L_4385315_4385316 chr2L_4384085_4385259;chr2L_4385316_4385822 0.00 0.00 NA 4.35 NA 14.29 0.00 0.00 0.00 NA NA 0.00 NA NA NA 4.55 NA NA 6.67 0.00 NA 0.00 0.00 NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 9.52 NA NA NA NA NA 0.00 NA NA NA K jcn_only_AA CG7231 chr2L + chr2L_7985769_7985833 chr2L_7985769_7985814 chr2L_7985553_7985768;chr2L_7985834_7986075 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA K intron_retention R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083458_8089393 chr2L_8083457_8083458;chr2L_8089393_8089394 chr2L_8083444_8083457;chr2L_8089394_8089493 100.00 NA NA 100.00 NA NA 100.00 93.75 100.00 NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA 100.00 100.00 NA NA NA NA 100.00 100.00 100.00 100.00 100.00 95.00 100.00 NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA 100.00 K cassette CG8929 chr2R + chr2R_16214899_16215831;chr2R_16214899_16215371 chr2R_16214899_16214948;chr2R_16215075_16215371,chr2R_16215075_16215831 chr2R_16214949_16215074 chr2R_16214792_16214898;chr2R_16215832_16216526 12.50 14.29 14.00 10.91 20.00 13.33 16.95 13.56 14.29 13.33 21.43 9.88 17.24 14.29 14.29 14.00 16.67 15.00 12.50 13.25 16.67 1.79 12.31 7.02 5.71 13.64 21.88 14.29 20.00 5.26 14.58 4.17 4.76 18.87 5.00 4.35 8.33 10.81 11.63 15.38 11.76 12.68 17.24 12.50 3.45 3.45 9.52 12.50 12.00 7.14 8.00 11.76 10.26 1.82 8.89 10.00 6.82 8.51 K jcn_only_AD CG4293,RI_chrX_423385_423664,I_chrX_423385_423676 chrX - chrX_423385_423442;chrX_423385_423676 chrX_423385_423664 chrX_423285_423384;chrX_423677_423764 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 1.85 0.00 5.00 0.00 0.00 NA 3.33 0.00 0.00 0.00 0.00 0.00 5.71 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 1.32 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 2.78 0.00 0.00 NA 3.12 NA 0.00 0.00 0.00 0.00 K intron_retention Asator chr4 - chr4_502331_502436 chr4_502330_502331;chr4_502436_502437 chr4_501835_502330;chr4_502437_502451 0.00 NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_last_exon RI_chr2R_12650846_12659758,Sod2 chr2R - chr2R_12661144_12661368 chr2R_12661312_12661368,chr2R_12661315_12661368 chr2R_12659763_12661143 chr2R_12661260_12661311 chr2R_12661369_12661392 35.41 50.00 NA 40.00 40.00 NA 25.00 25.00 37.50 33.33 66.67 60.00 NA 33.33 20.00 NA 50.00 66.67 0.00 50.00 66.67 0.00 NA 0.00 NA 50.00 NA NA 33.33 0.00 33.33 0.00 50.00 33.33 NA NA 25.00 NA 40.00 50.00 33.33 42.86 NA 0.00 NA NA 33.33 37.50 NA NA NA NA NA NA 50.00 0.00 50.00 NA K alternative_acceptor SdhC,CG6672 chr3R - chr3R_7035448_7035519 chr3R_7035463_7035519 chr3R_7035520_7035588;chr3R_7034856_7035447 100.00 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 98.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 99.26 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Hairless chr3R + chr3R_16447850_16448305;chr3R_16448221_16448305 chr3R_16447945_16448305 chr3R_16448306_16449020;chr3R_16447843_16447849 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 2.63 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K alternative_donor CG4119 chrX + chrX_5560355_5560409;chrX_5560351_5560409 chrX_5560347_5560409 chrX_5560410_5560501;chrX_5560114_5560346 48.78 60.78 34.78 31.82 44.44 34.78 30.43 36.00 43.86 62.96 47.83 50.00 30.43 50.00 31.58 28.00 57.14 46.67 37.50 51.16 47.62 61.54 44.00 60.38 48.78 19.05 47.92 51.06 21.43 46.30 39.13 59.46 45.28 45.95 75.00 34.15 55.34 57.75 59.38 58.18 51.72 47.46 36.84 65.22 64.10 53.12 55.56 58.33 37.50 54.35 53.62 61.29 66.67 62.50 48.48 66.67 58.82 46.15 K intron_retention CG6607,ana1 chr3R + chr3R_20355226_20355284 chr3R_20355225_20355226;chr3R_20355284_20355285 chr3R_20354704_20355225;chr3R_20355285_20355544 3.90 0.00 0.00 3.23 0.00 3.03 10.87 0.00 3.90 0.00 0.00 1.82 4.65 0.00 0.00 0.00 9.09 0.00 3.33 4.49 5.26 11.76 5.97 0.00 17.50 9.52 11.48 13.04 14.00 5.41 0.00 0.00 0.00 5.17 6.06 8.93 6.56 0.00 4.48 6.35 18.97 3.03 0.00 0.00 0.00 4.62 4.48 10.81 3.33 5.56 2.08 5.13 2.27 4.84 6.25 5.06 1.82 0.00 K intron_retention CREF_chr3R_5589662_5589762,RpS29,RI_chr3R_5604591_5604645,CG8500 chr3R + chr3R_5604441_5604498 chr3R_5604440_5604441;chr3R_5604498_5604499 chr3R_5604341_5604440;chr3R_5604499_5604590 0.00 0.00 0.03 0.00 0.00 0.00 0.01 0.02 0.02 0.00 0.00 0.01 0.00 0.02 0.00 0.00 0.02 0.00 0.00 0.02 0.04 0.00 0.00 0.00 0.00 0.05 0.04 0.16 0.81 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 K jcn_only_AA Ptpmeg,I_chr3L_353688_353782,I_chr3L_355125_355175 chr3L + chr3L_353688_353782 chr3L_353688_353760 chr3L_353588_353687;chr3L_353783_353882 100.00 98.65 98.18 100.00 95.35 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.23 100.00 100.00 97.06 100.00 98.63 94.74 100.00 100.00 100.00 100.00 98.68 100.00 100.00 99.24 100.00 100.00 100.00 98.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.49 98.15 100.00 100.00 100.00 98.67 K alternative_donor CG7177 chr3L - chr3L_21547281_21547665;chr3L_21547281_21547653 chr3L_21547281_21547480 chr3L_21547125_21547280;chr3L_21547666_21547994 25.00 NA 44.44 29.41 14.29 10.00 22.73 35.00 21.74 40.00 18.18 17.39 16.67 20.00 14.29 34.38 11.11 22.22 30.00 24.00 60.00 18.75 35.71 30.00 25.00 20.00 40.00 45.45 36.84 44.44 25.00 NA 45.00 16.67 14.29 45.45 35.71 50.00 44.44 37.50 NA 25.00 25.00 22.22 NA 25.00 16.67 21.05 30.00 NA 27.27 NA NA NA 21.43 NA NA 28.57 K jcn_only_AA CG3760,CG3770,CG12851 chr2R + chr2R_20826741_20826796;chr2R_20826741_20826799 chr2R_20826741_20826793 chr2R_20826672_20826740;chr2R_20826800_20826860 88.31 94.01 91.49 92.81 84.75 80.60 92.08 84.93 87.45 87.20 85.15 90.61 98.65 89.01 79.53 91.75 76.92 88.30 88.31 88.31 84.55 89.95 85.32 90.37 89.38 87.62 86.59 86.67 86.29 87.73 86.81 88.83 87.34 87.03 84.62 87.33 88.02 93.92 89.93 92.91 90.43 85.27 84.52 90.65 88.58 89.49 88.73 90.56 82.59 90.24 90.87 91.11 90.95 90.13 86.99 87.40 89.23 87.16 K jcn_only_AA shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9770053_9771599 chr2R_9771216_9771599 chr2R_9771600_9771660;chr2R_9769906_9770052 1.12 1.30 2.06 3.73 2.53 1.11 0.00 3.01 1.79 0.00 1.56 0.00 0.79 0.00 1.85 0.00 0.00 2.13 0.98 1.09 0.00 0.91 6.45 3.45 0.00 0.00 2.86 1.04 4.00 3.23 3.03 NA 0.00 1.25 0.00 0.00 0.51 0.00 2.56 1.18 NA 1.97 1.12 5.88 NA NA 0.00 7.55 0.66 NA 1.75 0.00 0.00 NA 2.10 NA NA NA K jcn_only_AA enc chr3L + chr3L_3839524_3839632 chr3L_3839524_3839605 chr3L_3839424_3839523;chr3L_3839633_3840770 0.00 0.00 2.13 3.39 3.85 0.00 3.70 0.00 1.04 5.71 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 2.17 0.00 0.00 0.00 0.88 1.03 1.72 3.03 0.00 0.00 0.00 1.52 2.44 NA 2.38 1.49 1.69 0.00 0.00 1.19 0.00 1.14 0.00 1.39 0.00 0.00 0.00 3.51 1.35 0.00 2.63 3.03 1.35 0.00 1.54 0.00 1.72 0.00 0.00 0.00 K intron_retention I_chrX_4000307_4003527,CG4857 chrX + chrX_4014458_4014534 chrX_4014457_4014458;chrX_4014534_4014535 chrX_4014329_4014457;chrX_4014535_4014601 0.00 0.00 0.00 3.19 0.00 5.00 0.00 2.13 2.56 NA 0.00 0.00 0.00 0.00 0.00 1.59 2.50 0.00 1.89 0.00 0.00 3.77 0.00 4.44 0.00 0.00 4.65 8.33 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 3.12 0.00 0.00 0.00 2.33 3.85 0.00 0.00 0.00 0.00 0.00 3.96 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 K jcn_only_AD CG4250,I_chr2R_18551419_18551493,E_chr2R_18551558_18551756 chr2R + chr2R_18551380_18551493 chr2R_18551419_18551493 chr2R_18551494_18551557;chr2R_18551319_18551379 0.35 0.00 0.00 0.15 0.83 0.29 0.32 0.30 0.58 1.67 0.58 0.43 1.64 0.00 2.14 0.35 0.36 0.54 0.63 0.77 0.00 1.06 0.00 0.00 0.00 0.33 0.40 0.00 1.15 0.36 0.48 0.38 0.49 0.19 0.39 0.85 0.65 0.00 0.25 0.24 0.28 0.13 0.00 0.36 0.50 0.14 0.00 0.85 0.54 0.25 0.00 0.00 0.52 0.00 0.44 0.00 0.33 0.74 K intron_retention I_chrX_17751392_17751520,CG6769 chrX + chrX_17756234_17756306 chrX_17756233_17756234;chrX_17756306_17756307 chrX_17755871_17756233;chrX_17756307_17756808 0.00 0.00 0.00 1.43 1.04 0.00 0.00 0.00 0.51 0.00 0.00 1.04 0.00 0.00 0.89 0.00 0.00 0.00 1.23 0.97 2.17 1.72 0.00 1.57 0.00 1.39 3.31 3.50 3.81 0.63 0.00 1.22 0.58 0.00 0.00 0.00 0.00 0.00 0.98 0.89 0.68 2.09 0.00 0.00 0.00 0.43 0.43 0.00 1.69 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.54 0.40 K cassette Vrp1,I_chr2R_17996482_17997091,I_chr2R_17996511_17997091,I_chr2R_17997529_17997692 chr2R - chr2R_17996286_17997091 chr2R_17996286_17996355;chr2R_17996511_17997091 chr2R_17996356_17996510 chr2R_17995991_17996285;chr2R_17997092_17997191 8.54 3.85 10.81 2.53 9.43 9.52 16.36 11.39 7.14 4.20 19.57 7.41 12.90 9.09 7.35 10.64 8.51 43.75 11.67 6.35 19.51 38.79 3.43 5.80 9.00 10.77 9.93 8.28 12.24 5.20 5.56 13.75 9.93 11.00 5.93 8.00 4.96 6.20 5.12 9.52 14.94 8.94 6.52 8.87 8.72 8.55 7.14 13.77 5.13 9.22 8.54 6.35 2.20 5.88 7.32 4.90 4.04 5.56 K jcn_only_AD Eph,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_640804_640879;chr4_640734_640879 chr4_640676_640879 chr4_640880_640963;chr4_640576_640675 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA 7.69 3.12 2.00 4.76 NA 0.00 0.00 NA 0.00 0.00 NA NA NA 5.56 NA NA 0.00 NA NA NA NA NA 0.00 0.00 2.27 0.00 0.00 4.17 0.00 NA 4.35 4.41 NA 5.88 NA NA NA 0.00 0.00 NA NA K alternative_acceptor CG8184,I_chrX_15620707_15620769 chrX + chrX_15615433_15615596 chrX_15615433_15615578 chrX_15610325_15615432;chrX_15615597_15617013 57.14 56.67 54.84 71.43 53.85 66.67 34.09 48.08 49.28 57.14 50.00 55.32 50.00 61.11 51.16 58.62 51.61 63.64 66.67 47.62 57.69 67.65 61.36 51.72 50.00 65.38 58.06 57.14 58.33 61.54 70.97 58.33 63.33 58.54 55.17 65.62 58.62 50.00 60.38 54.24 66.67 58.82 50.00 60.47 51.72 57.14 50.00 62.50 56.25 40.00 51.02 61.11 50.00 75.00 56.82 66.67 43.75 65.22 K cassette MRP,F_chr2L_12727117_12736035 chr2L + chr2L_12727117_12737958 chr2L_12727117_12736592;chr2L_12736814_12737958 chr2L_12736593_12736813 chr2L_12727017_12727116;chr2L_12737959_12738176 19.35 16.28 26.47 31.25 25.00 22.22 34.72 29.17 25.86 17.50 35.71 55.38 28.00 30.00 19.35 26.32 25.81 15.38 28.12 50.00 29.63 7.74 12.59 11.11 10.61 27.27 11.36 7.89 10.08 15.29 14.04 23.26 18.69 26.92 16.07 21.50 10.99 8.54 8.08 17.95 28.26 27.78 27.59 9.52 16.00 19.15 11.36 30.12 27.91 6.19 9.22 15.91 11.43 7.55 28.57 8.57 20.83 40.43 K alternative_last_exon I_chrX_15223901_15223968,HDAC6,I_chrX_15232958_15233665 chrX + chrX_15232699_15233659 chrX_15232699_15232869 chrX_15233660_15234394 chrX_15232870_15233125 chrX_15232108_15232698 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 12.50 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 6.25 8.33 0.00 0.00 5.00 K intron_retention dpr17 chr3R + chr3R_7936410_7936553 chr3R_7936409_7936410;chr3R_7936553_7936554 chr3R_7936304_7936409;chr3R_7936554_7936755 0.00 3.12 0.00 3.03 6.67 0.00 0.00 0.00 3.39 NA NA 3.39 0.00 6.25 0.00 0.00 0.00 0.00 4.17 2.38 0.00 2.38 1.02 1.61 0.00 2.94 2.17 15.79 8.57 0.00 0.00 0.00 0.00 0.00 0.00 8.33 2.90 2.00 2.25 0.00 0.00 4.76 4.55 1.47 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 2.60 1.19 3.23 K intron_retention Lnk,RI_chr3R_21714780_21715376 chr3R + chr3R_21717790_21718170 chr3R_21717789_21717790;chr3R_21718170_21718171 chr3R_21716440_21717789;chr3R_21718171_21718878 3.95 7.69 0.00 6.67 0.00 0.00 6.56 4.76 4.90 5.26 0.00 4.85 4.44 2.04 4.88 1.12 6.25 0.00 3.85 4.88 5.71 5.88 5.06 4.11 1.72 2.70 5.48 7.69 4.12 3.95 3.37 2.90 2.59 4.65 5.48 0.00 2.70 0.00 1.12 5.56 2.61 5.50 0.00 3.39 5.68 4.43 2.33 4.73 8.25 1.20 1.19 1.64 0.00 0.00 5.45 2.38 1.20 4.74 K intron_retention CaMKII,I_chr4_1059085_1060638,I_chr4_1059085_1065781,RI_chr4_1061742_1064093,RI_chr4_1061742_1065781,I_chr4_1061989_1065781,RI_chr4_1063745_1065781,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1059064_1065781 chr4_1059063_1059064;chr4_1065781_1065782 chr4_1059016_1059063;chr4_1065782_1065874 0.00 NA NA 0.00 NA NA 9.68 0.00 8.33 NA NA 0.00 NA 0.00 NA 6.25 NA 0.00 0.00 0.00 0.00 NA NA NA NA NA NA NA NA NA 0.00 0.00 NA 4.88 NA NA NA NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K cassette Nopp140,I_chr3L_21828330_21828566,I_chr3L_21828986_21829082 chr3L + chr3L_21827930_21828566 chr3L_21827930_21828170;chr3L_21828330_21828566 chr3L_21828171_21828329 chr3L_21827465_21827929;chr3L_21828567_21828666 25.84 31.00 21.57 26.53 23.44 24.21 23.01 27.92 25.84 29.20 29.23 23.98 21.95 25.64 21.57 19.84 24.24 28.71 20.93 29.32 27.12 8.09 30.49 29.55 39.51 23.86 37.74 40.76 24.65 25.95 17.27 19.08 23.17 21.74 20.95 30.09 35.66 28.70 25.00 24.78 25.30 25.12 24.39 30.97 35.76 25.36 30.58 20.16 27.03 26.50 28.80 26.76 31.55 35.90 21.55 28.57 36.31 25.22 K intron_retention noncoding_7854 chr2R + chr2R_14663212_14663384 chr2R_14663211_14663212;chr2R_14663384_14663385 chr2R_14663174_14663211;chr2R_14663385_14663822 73.33 75.68 81.82 82.35 82.61 77.42 70.45 68.42 60.00 53.33 68.18 64.18 66.67 74.07 77.55 83.64 73.33 75.76 82.35 76.19 67.86 69.57 69.57 64.10 72.73 83.33 72.09 88.89 85.71 60.00 54.55 79.41 76.92 82.61 69.57 78.79 64.29 59.09 65.22 69.23 75.00 73.61 75.00 91.30 84.09 86.36 68.42 78.57 73.17 70.00 65.96 66.67 63.64 79.41 75.61 70.21 72.00 76.74 K jcn_only_AA nvy,I_chr2R_20177146_20177208 chr2R + chr2R_20177146_20177208 chr2R_20177146_20177203 chr2R_20177046_20177145;chr2R_20177209_20177308 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 NA 100.00 95.45 NA 100.00 NA NA NA 96.30 100.00 NA 99.19 100.00 100.00 100.00 NA 100.00 98.59 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 98.28 100.00 97.06 NA 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 NA 100.00 97.14 NA 100.00 97.01 97.06 K alternative_donor foi,I_chr3L_8520658_8520733,I_chr3L_8524905_8524976 chr3L + chr3L_8518753_8523659;chr3L_8518805_8523659 chr3L_8518490_8523659 chr3L_8523660_8524249;chr3L_8518407_8518489 5.71 2.35 6.06 7.20 3.90 4.40 0.85 3.76 3.55 8.24 5.95 0.66 2.86 3.53 5.71 4.63 6.49 3.30 3.53 6.47 5.26 10.29 6.90 5.31 7.95 1.19 2.86 8.65 13.40 5.74 6.19 5.56 7.07 5.38 4.40 5.98 6.47 3.12 2.07 6.60 8.79 3.55 5.71 8.18 9.46 6.06 14.29 5.85 2.58 7.69 3.17 2.82 5.56 8.51 5.31 5.41 9.52 6.52 K jcn_only_AA RpL27A,E_chr2L_4457411_4457977,I_chr2L_4458058_4458120 chr2L - chr2L_4457290_4457374;chr2L_4457275_4457374 chr2L_4457319_4457374 chr2L_4457375_4457410;chr2L_4457188_4457274 0.03 0.04 0.03 0.03 0.07 0.03 0.00 0.02 0.05 0.12 0.03 0.09 0.07 0.00 0.00 0.06 0.00 0.06 0.03 0.04 0.11 0.03 0.00 0.03 0.11 0.05 0.00 0.08 0.07 0.18 0.00 0.04 0.00 0.00 0.13 0.00 0.08 0.07 0.09 0.02 0.05 0.05 0.03 0.00 0.03 0.03 0.07 0.00 0.04 0.03 0.11 0.00 0.08 0.14 0.00 0.11 0.00 0.02 K intron_retention Fur2,RI_chrX_16267905_16268958,I_chrX_16270205_16270272,I_chrX_16274795_16274867 chrX + chrX_16270201_16270272 chrX_16270200_16270201;chrX_16270272_16270273 chrX_16270138_16270200;chrX_16270273_16270372 83.05 83.05 82.19 84.68 82.61 79.75 93.24 75.00 83.47 80.00 86.00 79.37 90.20 88.24 83.13 77.32 72.58 83.61 77.22 87.22 86.89 74.29 79.76 83.33 85.11 90.41 81.71 80.00 83.61 78.57 79.71 84.38 57.97 85.59 83.05 97.62 83.10 83.33 89.29 81.25 87.88 82.64 80.30 83.05 78.79 78.33 81.08 83.33 79.22 83.78 80.56 88.68 81.82 94.44 83.13 76.92 77.42 77.42 K alternative_acceptor cni,RI_chr2L_16309575_16309999,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16310624_16310690;chr2L_16310641_16310690 chr2L_16310637_16310690 chr2L_16310691_16310700;chr2L_16310441_16310623 17.86 27.27 13.24 13.85 17.86 17.46 18.97 16.00 16.13 20.00 6.00 20.91 15.69 13.85 22.22 11.86 10.00 32.14 9.28 19.80 17.07 21.21 25.49 22.58 18.75 31.11 9.68 16.67 37.93 8.70 27.14 27.27 25.93 16.06 36.36 17.39 20.45 17.78 16.95 37.29 18.18 8.85 16.42 35.90 36.11 27.50 17.14 37.04 17.29 30.00 7.84 12.77 20.00 38.46 13.83 23.81 17.39 12.50 K alternative_donor Gel,I_chr3R_63540_64006,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_63540_64024 chr3R_63962_64024 chr3R_64025_64099;chr3R_63440_63539 0.77 0.44 0.69 0.69 0.54 0.57 1.29 0.56 0.65 1.16 0.59 0.77 0.45 0.51 0.92 1.04 0.54 0.95 0.45 0.56 1.03 8.76 0.91 0.72 2.05 1.22 1.62 2.80 2.75 0.92 0.58 0.84 2.70 0.61 1.04 2.86 0.87 0.72 0.60 2.59 4.81 0.52 0.60 0.88 1.40 0.45 0.93 5.81 0.72 0.80 0.60 2.15 0.00 0.55 0.37 0.38 0.59 2.54 K intron_retention ens,I_chr3L_4130719_4131120 chr3L - chr3L_4127163_4128613 chr3L_4127162_4127163;chr3L_4128613_4128614 chr3L_4126989_4127162;chr3L_4128614_4128627 50.00 33.33 41.67 NA NA 25.00 NA 60.00 40.00 NA NA 58.33 NA 63.64 NA 70.00 NA 25.93 NA 38.24 NA 88.89 35.00 41.67 NA NA NA 54.55 42.11 60.00 NA NA 55.56 43.75 50.00 75.00 50.00 38.46 43.75 52.00 30.77 45.45 NA 50.00 30.00 50.00 28.57 74.29 52.94 NA 50.00 NA 63.64 NA 41.67 NA NA 52.00 K intron_retention TM9SF4,I_chr2L_13774105_13774160 chr2L + chr2L_13773323_13773382 chr2L_13773322_13773323;chr2L_13773382_13773383 chr2L_13773184_13773322;chr2L_13773383_13773888 2.74 1.89 6.33 5.10 5.36 0.00 4.17 3.38 2.48 5.56 5.26 2.88 0.00 1.59 2.15 4.00 3.77 2.74 2.22 3.43 0.00 3.39 0.00 0.00 6.00 8.33 12.31 8.16 27.87 0.00 0.00 2.30 3.57 2.42 2.56 8.47 1.67 5.26 2.82 0.70 7.89 3.21 0.00 0.00 2.44 2.04 1.19 3.75 0.75 2.90 0.00 0.00 0.00 2.53 1.09 6.33 2.90 4.08 K intron_retention RpS5a,I_chrX_17037805_17038646,I_chrX_17037805_17039048,I_chrX_17037805_17040830,snoRNA:Psi28S-1192d,snoRNA:Psi28S-1192c,snoRNA:Psi28S-1192b,snoRNA:Psi28S-1192a,I_chrX_17038786_17039048,snoRNA:Psi28S-2876,snoRNA:Psi18S-1854c,snoRNA:Psi28S-1135f,snoRNA:Psi18S-1854b,snoRNA:Psi28S-1135e,snoRNA:Psi18S-1854a,snoRNA:Psi28S-1135d,snoRNA:Psi28S-1135c,snoRNA:Psi28S-1135b,snoRNA:Psi28S-1135a chrX - chrX_17037805_17038650 chrX_17037804_17037805;chrX_17038650_17038651 chrX_17037705_17037804;chrX_17038651_17038746 0.02 0.02 0.03 0.02 0.00 0.00 0.01 0.02 0.01 0.00 0.00 0.03 0.00 0.03 0.01 0.04 0.00 0.00 0.03 0.03 0.03 0.03 0.05 0.00 0.02 0.04 0.03 0.08 0.03 0.03 0.03 0.00 0.04 0.02 0.02 0.03 0.01 0.02 0.01 0.01 0.02 0.01 0.00 0.00 0.02 0.02 0.03 0.00 0.05 0.01 0.02 0.00 0.02 0.02 0.03 0.00 0.01 0.00 K intron_retention CG3056 chrX + chrX_1266301_1266493 chrX_1266300_1266301;chrX_1266493_1266494 chrX_1266119_1266300;chrX_1266494_1267080 0.00 0.00 1.82 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.95 0.00 3.12 0.00 0.00 0.00 0.00 4.60 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 3.03 0.00 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 1.72 0.00 0.00 K intron_retention CdsA,mus301 chr3L + chr3L_8121470_8122183 chr3L_8121469_8121470;chr3L_8122183_8122184 chr3L_8121154_8121469;chr3L_8122184_8122308 0.00 0.00 0.00 0.00 0.00 0.00 9.26 0.00 0.95 0.00 2.56 2.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 6.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 2.22 0.00 0.00 1.67 0.00 0.00 2.50 K intron_retention pAbp,I_chr2R_14027838_14028996 chr2R + chr2R_14028922_14028996 chr2R_14028921_14028922;chr2R_14028996_14028997 chr2R_14028916_14028921;chr2R_14028997_14029096 48.08 NA NA 56.25 NA NA 64.29 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 41.67 NA NA NA 46.15 55.00 38.46 NA NA NA NA NA NA 66.67 23.81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette bbc,I_chr2R_9376554_9377246,REI_chr2R_9379401_9381986 chr2R - chr2R_9375638_9378939;chr2R_9376554_9378939 chr2R_9376554_9377246,chr2R_9375638_9377246;chr2R_9377379_9378939 chr2R_9377247_9377378 chr2R_9375479_9375637;chr2R_9378940_9379098 12.00 7.02 18.18 10.34 8.89 12.90 15.56 18.06 17.58 5.56 7.69 21.05 12.82 26.47 15.56 25.88 13.16 8.47 15.25 10.48 7.89 16.67 12.36 8.54 12.00 8.11 6.76 8.20 8.11 11.76 16.67 10.00 21.43 23.08 18.18 6.38 5.15 4.35 4.23 10.94 14.29 14.10 13.51 10.00 4.65 13.89 12.50 18.75 19.23 8.33 9.62 14.63 3.12 12.12 12.00 5.66 7.14 17.65 K jcn_only_AD CG32579,I_chrX_16217978_16218111,I_chrX_16218930_16219644 chrX + chrX_16217963_16218111 chrX_16217978_16218111 chrX_16218112_16218211;chrX_16217878_16217962 2.13 0.00 0.00 4.44 2.38 2.13 4.35 2.97 4.24 6.90 0.00 2.35 3.03 1.72 9.09 1.30 2.17 0.00 3.23 1.96 0.00 1.37 0.00 2.78 2.38 4.17 7.69 2.38 3.53 3.45 2.65 0.00 3.33 1.35 3.08 2.22 0.00 0.00 1.75 0.00 3.16 2.27 0.00 0.00 0.00 3.39 0.00 3.55 0.00 1.67 1.69 0.00 2.38 0.00 1.92 2.17 0.00 0.61 K alternative_acceptor CG31169,I_chr3R_18209085_18209133 chr3R + chr3R_18209227_18209283 chr3R_18209227_18209280 chr3R_18209173_18209226;chr3R_18209284_18209921 74.16 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 73.33 NA NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention mth chr3L - chr3L_343653_343954 chr3L_343652_343653;chr3L_343954_343955 chr3L_343440_343652;chr3L_343955_344039 11.11 NA NA NA NA NA NA NA 33.33 NA 11.11 36.36 NA NA NA 28.57 NA 3.57 NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.56 NA 8.33 NA NA NA NA NA NA NA NA NA 4.17 K jcn_only_AD Ect4,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8100030_8101385 chr3L_8100050_8101385 chr3L_8101386_8101485;chr3L_8099930_8100029 98.34 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 95.83 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.43 NA NA NA NA NA NA NA NA NA NA NA 96.67 K alternative_acceptor vap,RI_chrX_15897976_15899352,I_chrX_15897976_15899654,I_chrX_15898011_15899654,I_chrX_15898427_15899017,RI_chrX_15898427_15899654,RI_chrX_15899237_15899352,I_chrX_15899237_15899654 chrX - chrX_15898115_15898360 chrX_15898120_15898360 chrX_15898361_15898368;chrX_15897748_15898114 94.99 NA 94.44 100.00 NA 90.00 94.74 86.84 92.86 NA 92.31 95.45 90.00 92.31 NA 100.00 100.00 100.00 95.24 95.65 90.00 92.31 92.31 NA NA 100.00 NA NA NA 90.91 91.67 NA 100.00 96.15 100.00 88.89 NA NA NA 88.89 NA 95.83 91.67 88.89 NA 100.00 NA 100.00 96.67 NA 100.00 NA NA NA 86.67 NA 100.00 100.00 K alternative_acceptor Sdc,I_chr2R_17286819_17367595,I_chr2R_17324594_17367595 chr2R - chr2R_17367884_17368518;chr2R_17367862_17368518 chr2R_17368045_17368518 chr2R_17368519_17368632;chr2R_17367596_17367861 0.00 NA NA 0.00 NA 0.00 9.52 5.41 4.55 NA NA 0.00 0.00 4.35 NA 2.27 0.00 0.00 0.00 4.35 NA NA NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 2.08 NA 8.33 NA NA NA 0.00 NA NA 0.00 K intron_retention CG3632,RI_chrX_16195880_16196242 chrX + chrX_16194909_16194971 chrX_16194908_16194909;chrX_16194971_16194972 chrX_16194804_16194908;chrX_16194972_16195557 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 6.25 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 NA K alternative_acceptor I_chrX_15223901_15223968,HDAC6,I_chrX_15232958_15233665 chrX + chrX_15232056_15232107 chrX_15232056_15232104 chrX_15230648_15232055;chrX_15232108_15232698 100.00 100.00 100.00 100.00 NA 100.00 100.00 92.31 96.00 NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 92.86 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention nimB1 chr2L + chr2L_13963739_13963898 chr2L_13963738_13963739;chr2L_13963898_13963899 chr2L_13963545_13963738;chr2L_13963899_13964456 25.93 16.67 10.53 39.29 25.00 26.09 21.88 20.31 24.36 NA 25.93 21.74 45.45 34.62 30.30 40.74 26.32 17.14 30.77 19.44 29.41 NA 25.00 30.00 NA 36.36 47.37 NA NA 29.41 13.70 27.78 16.67 30.56 26.67 NA 17.65 20.00 12.50 47.06 41.67 20.31 21.43 13.79 26.67 29.63 29.17 22.22 28.26 31.58 30.77 33.33 12.12 22.22 18.92 25.00 15.85 24.14 K intron_retention ssp4,I_chr2R_13409412_13410357,RI_chr2R_13409412_13411004,I_chr2R_13409412_13411328,I_chr2R_13409412_13411588,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13409406_13411588 chr2R_13409405_13409406;chr2R_13411588_13411589 chr2R_13409337_13409405;chr2R_13411589_13411688 50.00 47.83 77.78 53.33 45.83 61.11 77.42 62.96 53.19 NA 43.75 49.02 83.33 40.00 68.97 72.73 66.67 61.29 56.25 64.15 72.22 26.92 50.00 44.44 42.86 35.29 65.00 30.77 50.00 52.63 61.90 29.41 47.37 66.67 36.84 30.00 46.88 65.00 42.11 38.89 NA 57.14 68.42 36.36 18.18 34.62 47.06 69.23 57.50 52.38 50.00 61.11 46.15 33.33 57.14 39.13 63.64 50.00 K intron_retention SPoCk,I_chr3L_22776339_22776519,I_chr3L_22777865_22778359 chr3L + chr3L_22766817_22767837 chr3L_22766816_22766817;chr3L_22767837_22767838 chr3L_22766783_22766816;chr3L_22767838_22768237 42.86 NA 41.67 47.06 NA 38.46 33.33 33.33 46.15 21.43 NA 34.88 NA NA 42.86 50.00 NA NA 46.15 43.75 NA NA 43.75 NA NA 54.55 43.75 NA 60.00 70.00 35.71 NA 30.77 33.33 31.25 69.23 40.00 NA 25.00 21.43 NA 38.46 38.46 NA NA NA NA 63.64 52.38 NA 50.00 NA NA NA 61.11 NA NA NA K jcn_only_AD E2f,CG6353 chr3R - chr3R_17487942_17488440 chr3R_17487942_17488436 chr3R_17486978_17487941;chr3R_17488441_17488464 3.75 4.26 3.51 2.63 0.00 6.00 1.45 2.70 6.90 7.14 0.00 2.67 0.00 2.50 10.20 1.92 0.00 4.55 10.64 0.88 4.88 0.00 5.00 3.66 3.17 0.00 5.41 3.23 3.17 3.92 23.44 6.25 3.45 7.46 3.70 4.44 5.56 5.66 1.47 4.17 2.13 2.17 3.12 4.00 4.55 5.06 1.25 13.89 1.52 5.41 3.75 4.55 2.63 2.41 5.56 4.92 5.19 6.25 K alternative_acceptor Aats-leu chr3L + chr3L_4826043_4826101 chr3L_4826043_4826094 chr3L_4825871_4826042;chr3L_4826102_4827886 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 87.50 NA 100.00 NA NA 93.75 100.00 100.00 NA NA NA 100.00 91.67 NA 90.00 NA NA NA 100.00 100.00 NA 90.00 NA 90.91 NA NA NA NA NA 88.89 100.00 K alternative_donor Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2364640;chr2L_2361586_2364480;chr2L_2361586_2364836;chr2L_2361586_2365060;chr2L_2361586_2364594;chr2L_2361586_2364312;chr2L_2361586_2364889 chr2L_2361586_2364302 chr2L_2361486_2361585;chr2L_2365061_2365065 0.00 0.00 0.00 1.41 0.00 0.00 1.59 1.25 0.89 0.00 0.00 2.82 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.91 0.00 2.86 0.00 3.12 0.00 0.00 4.35 0.00 4.17 0.00 2.22 0.00 0.00 1.32 3.85 4.17 0.00 0.00 0.00 2.86 0.00 1.23 0.00 3.70 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 K intron_retention SWAP,RI_chrX_936466_936762,I_chrX_936466_936835,RI_chrX_936919_937245,RI_chrX_938935_938985,I_chrX_941459_982652 chrX + chrX_936466_936762 chrX_936465_936466;chrX_936762_936763 chrX_936366_936465;chrX_936763_936862 81.82 88.89 NA 75.00 NA NA 76.92 88.24 81.82 NA NA 92.86 NA NA 90.00 100.00 NA NA 88.89 84.62 NA 70.00 70.00 NA 88.89 NA 90.00 NA NA NA 55.00 NA 66.67 81.82 NA NA 87.50 NA NA 76.47 NA 84.21 NA NA NA 69.23 81.82 58.33 94.12 NA 60.00 75.00 NA NA 90.91 NA NA NA K intron_retention lack chr2R + chr2R_13487694_13487766 chr2R_13487693_13487694;chr2R_13487766_13487767 chr2R_13487647_13487693;chr2R_13487767_13489852 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 100.00 100.00 100.00 100.00 98.92 100.00 100.00 100.00 100.00 98.51 98.11 98.28 100.00 100.00 98.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 96.77 98.15 96.97 100.00 100.00 100.00 98.55 100.00 98.72 100.00 100.00 95.83 100.00 100.00 100.00 98.04 K intron_retention Hil chr2R - chr2R_16502439_16505634 chr2R_16502438_16502439;chr2R_16505634_16505635 chr2R_16502011_16502438;chr2R_16505635_16505711 76.69 56.25 56.25 76.47 60.00 91.67 92.86 85.00 58.82 71.43 43.75 82.35 90.00 63.64 85.71 68.18 50.00 75.00 69.23 85.00 87.50 71.43 78.12 80.00 82.35 66.67 84.62 NA 77.27 57.14 71.43 68.75 92.31 67.86 81.25 94.12 67.44 68.42 87.10 60.00 NA 72.41 NA 64.52 91.67 81.82 58.33 82.35 77.27 76.92 73.91 77.78 87.50 90.00 75.00 73.33 100.00 90.91 K intron_retention CkIIbeta,I_chrX_11689220_11690898 chrX + chrX_11689220_11690898 chrX_11689219_11689220;chrX_11690898_11690899 chrX_11689138_11689219;chrX_11690899_11690998 98.11 97.96 96.83 98.77 97.87 94.23 88.16 99.17 97.67 92.11 95.89 98.82 94.55 98.36 98.31 98.96 97.92 93.10 98.59 97.47 98.36 94.83 100.00 95.45 100.00 100.00 94.64 96.97 98.11 98.31 98.25 100.00 99.36 96.88 98.39 100.00 98.59 96.67 96.72 99.14 98.11 96.12 95.00 98.33 96.88 98.90 91.94 98.96 99.12 98.48 96.77 97.22 97.67 96.55 98.72 98.31 96.97 99.19 K cassette CG32264,RI_chr3L_3769407_3803313 chr3L - chr3L_3718991_3722155 chr3L_3718991_3721536;chr3L_3721567_3722155 chr3L_3721537_3721566 chr3L_3718638_3718990;chr3L_3722156_3722522 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RI_chrX_6482284_6482336,Pat1,I_chrX_6489999_6490050,APC7 chrX + chrX_6489994_6490050 chrX_6489999_6490050 chrX_6490051_6490150;chrX_6489899_6489993 48.48 55.56 52.00 50.85 68.18 60.00 41.82 60.27 46.58 38.10 21.43 40.35 47.50 57.14 60.87 42.59 48.39 34.62 54.76 50.00 29.41 19.51 60.00 45.45 63.64 48.28 57.78 45.16 46.43 40.54 39.47 44.00 37.08 49.18 32.14 51.61 60.00 50.00 48.00 34.92 53.57 49.25 48.48 55.26 30.51 45.71 58.82 34.17 50.77 42.42 61.29 50.00 54.55 36.84 56.76 52.17 50.00 42.28 K intron_retention CG4928,RI_chrX_16827793_16828070 chrX + chrX_16828477_16828900 chrX_16828476_16828477;chrX_16828900_16828901 chrX_16828071_16828476;chrX_16828901_16829754 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 14.81 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA NA NA NA K alternative_acceptor CG5514,RI_chr3R_23768206_23768306,Gp93 chr3R + chr3R_23767856_23768156;chr3R_23767856_23768309 chr3R_23767856_23768306 chr3R_23765429_23767855;chr3R_23768310_23768406 10.00 8.89 6.82 12.77 6.90 7.50 7.69 13.64 7.78 12.50 3.12 9.59 14.29 11.43 11.90 12.50 8.00 7.14 7.14 12.09 7.14 6.90 7.55 12.07 9.09 11.11 7.69 5.71 6.12 2.78 14.58 13.56 10.14 11.29 12.77 11.90 12.07 6.25 9.52 8.89 11.76 10.00 12.90 5.26 8.60 11.11 7.23 10.53 12.86 8.25 10.00 13.33 4.84 14.81 10.00 12.28 11.83 13.64 K alternative_donor CG2065 chr2R + chr2R_3551440_3551537 chr2R_3551469_3551537 chr2R_3551538_3551801;chr2R_3551288_3551439 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.27 3.45 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 2.20 1.82 0.00 0.00 0.00 2.33 9.09 0.00 2.78 2.50 5.88 1.82 0.00 0.00 0.00 2.08 2.38 0.00 3.45 1.82 4.76 0.00 4.26 0.00 0.00 1.54 2.99 0.00 2.99 0.00 0.00 0.00 0.00 0.00 0.00 1.67 K cassette CG6838,I_chr3L_22709306_22709668 chr3L - chr3L_22709303_22709668 chr3L_22709303_22709406;chr3L_22709515_22709668 chr3L_22709407_22709514 chr3L_22709206_22709302;chr3L_22709669_22709768 95.83 90.24 97.37 80.00 96.55 92.11 90.91 98.00 95.83 91.43 85.19 98.15 96.00 96.43 94.87 100.00 96.15 96.88 100.00 96.00 90.91 84.00 88.52 97.67 97.14 81.82 97.22 91.49 89.58 88.57 87.88 96.67 94.92 93.33 96.97 100.00 94.03 93.02 96.55 93.65 96.15 95.38 100.00 97.67 97.78 97.50 100.00 94.00 94.74 94.00 93.18 95.00 97.50 96.15 95.00 93.75 95.83 98.25 K alternative_donor I_chr3R_23771063_23772599,CG4951,RI_chr3R_23778808_23778861 chr3R - chr3R_23778808_23778865 chr3R_23778808_23778861 chr3R_23778715_23778807;chr3R_23778866_23778961 1.02 4.41 0.00 0.00 0.00 0.00 0.00 2.94 1.18 0.00 0.00 1.03 2.86 0.00 1.54 2.22 0.00 0.00 0.00 0.89 0.00 0.00 2.63 1.18 0.00 4.44 8.33 2.86 1.59 0.00 4.08 1.02 1.54 2.38 0.00 1.92 0.00 0.00 0.98 2.08 2.25 2.83 2.22 4.65 0.00 0.86 0.00 0.72 2.44 0.00 0.00 2.70 0.00 0.00 1.67 1.39 1.69 1.77 K intron_retention CrebB-17A,I_chrX_18261213_18269281,I_chrX_18265640_18266060,I_chrX_18265982_18266063 chrX + chrX_18267489_18269281 chrX_18267488_18267489;chrX_18269281_18269282 chrX_18267320_18267488;chrX_18269282_18269381 13.04 0.00 9.09 15.62 17.65 10.34 25.00 13.04 3.80 20.00 27.78 8.99 16.67 NA 13.16 19.35 12.50 13.51 7.41 9.46 26.92 17.74 8.70 3.57 8.57 19.35 21.05 56.00 23.26 6.67 9.76 23.81 9.52 13.89 13.79 13.04 5.68 9.62 11.84 13.21 15.38 7.59 15.38 17.65 19.05 16.36 9.52 18.00 10.39 12.12 13.04 5.26 5.00 17.07 20.00 5.77 3.57 6.67 K jcn_only_AA RpL15 chr3LHet + chr3LHet_2397820_2398143;chr3LHet_2397820_2398127 chr3LHet_2397820_2398049 chr3LHet_2397802_2397819;chr3LHet_2398144_2398454 3.25 NA 0.00 6.08 NA 6.45 NA 2.66 3.70 20.00 4.17 12.50 NA NA 0.63 26.09 2.00 3.03 3.48 4.00 NA 6.63 NA NA NA 2.53 NA 4.72 7.59 1.00 16.54 4.31 1.68 2.80 2.13 2.78 NA NA NA 2.61 7.98 4.94 2.74 2.58 2.15 4.81 NA 5.85 5.42 NA NA NA 1.19 NA 0.97 NA 0.00 2.24 K cassette CG15279,F_chr2L_14847018_14848004,F_chr2L_14848345_14848673,I_chr2L_14849367_14851281 chr2L - chr2L_14847058_14848673 chr2L_14847058_14848004;chr2L_14848255_14848673 chr2L_14848005_14848254 chr2L_14846796_14847057;chr2L_14848674_14848687 35.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 35.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG15098,I_chr2R_14721883_14721980 chr2R - chr2R_14721883_14721980 chr2R_14721882_14721883;chr2R_14721980_14721981 chr2R_14721834_14721882;chr2R_14721981_14722049 99.03 99.35 98.60 99.53 98.82 98.35 98.98 98.21 99.24 97.01 99.18 99.25 99.22 100.00 99.32 98.86 99.00 99.18 98.37 99.29 97.73 97.85 99.41 98.91 100.00 99.22 98.64 99.26 99.21 100.00 94.70 95.45 99.31 98.95 99.03 96.91 98.95 99.38 98.76 96.97 100.00 99.62 98.95 98.43 98.57 98.57 99.57 96.97 100.00 99.18 98.83 99.17 100.00 99.15 98.52 100.00 99.62 98.51 K alternative_donor CG15072,RI_chr2R_14576128_14579545,I_chr2R_14589693_14590032 chr2R + chr2R_14576017_14579545;chr2R_14576049_14579545;chr2R_14576247_14579545;chr2R_14576056_14579545;chr2R_14576154_14579545 chr2R_14575874_14579545 chr2R_14579546_14579571;chr2R_14575805_14575873 23.53 50.00 20.00 7.69 33.33 16.67 17.65 11.11 24.00 50.00 44.44 40.00 29.41 33.33 12.50 5.56 44.44 14.29 20.00 30.00 25.00 14.29 22.22 20.00 50.00 0.00 42.86 33.33 14.29 14.29 33.33 50.00 9.09 13.33 50.00 25.00 37.50 0.00 20.00 23.53 0.00 7.14 11.11 18.18 100.00 25.00 33.33 11.11 25.00 66.67 33.33 20.00 25.00 50.00 0.00 100.00 0.00 11.11 K alternative_acceptor WRNexo chr3R - chr3R_14191699_14191757 chr3R_14191702_14191757 chr3R_14191758_14191788;chr3R_14191633_14191698 95.24 94.12 91.67 93.75 90.00 100.00 95.24 95.00 97.56 100.00 88.89 95.83 93.75 92.86 100.00 96.55 100.00 100.00 92.31 97.44 91.67 92.86 95.83 90.91 NA 100.00 90.91 NA NA 96.00 100.00 95.83 95.35 95.24 90.91 92.31 95.83 100.00 NA 95.65 95.00 84.21 92.31 92.86 100.00 89.66 87.88 96.97 96.88 100.00 94.74 94.12 92.00 92.86 94.12 95.24 100.00 98.36 K jcn_only_AD endos,I_chr3L_14024099_14024488,I_chr3L_14024103_14024158,I_chr3L_14024103_14024546,noncoding_12505,I_chr3L_14024496_14024546 chr3L - chr3L_14024103_14024546;chr3L_14024103_14024158;chr3L_14024103_14024407 chr3L_14024103_14024488 chr3L_14024003_14024102;chr3L_14024547_14024588 96.15 96.05 95.95 97.38 94.70 98.50 94.35 98.73 96.15 93.89 97.87 99.07 97.06 97.86 98.60 95.27 98.01 97.44 97.78 96.62 99.35 88.98 87.23 90.81 93.42 100.00 98.40 94.21 96.30 95.38 97.69 96.41 87.44 96.79 96.33 97.96 93.18 88.68 92.57 95.64 96.35 96.07 96.40 97.54 94.83 94.87 95.12 97.14 97.20 90.24 95.90 97.89 96.00 92.52 99.43 89.93 93.63 94.43 K jcn_only_AD CG12079,CG14964 chr3L - chr3L_3159216_3159273 chr3L_3159216_3159269 chr3L_3158485_3159215;chr3L_3159274_3159348 0.00 0.82 0.00 0.00 0.00 0.00 0.70 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.32 0.00 0.00 0.00 0.39 0.77 1.00 0.00 0.00 1.50 0.79 1.42 0.00 0.00 1.01 0.85 0.00 0.69 1.20 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.49 0.86 0.00 0.90 0.00 0.84 0.89 0.00 0.87 0.00 1.46 0.32 0.00 K intron_retention RpL19,I_chr2R_20858841_20859293 chr2R - chr2R_20856748_20856991 chr2R_20856747_20856748;chr2R_20856991_20856992 chr2R_20856641_20856747;chr2R_20856992_20857186 0.40 0.36 0.14 0.27 0.19 0.19 0.56 0.12 0.20 0.52 0.24 0.15 0.07 0.15 0.21 0.16 0.19 0.09 0.14 0.16 0.10 1.19 0.52 0.34 1.12 0.56 2.75 2.37 1.34 1.05 0.47 0.78 0.48 0.21 0.65 6.57 0.25 0.55 0.83 0.68 2.34 0.16 0.26 0.83 0.11 1.46 0.26 0.78 0.39 0.85 0.89 0.53 0.40 2.88 0.11 0.55 0.26 0.67 K jcn_only_AD CG17549,R_chr2L_19388305_19388473,RI_chr2L_19388570_19389427,I_chr2L_19388570_19389922 chr2L - chr2L_19388570_19389427;chr2L_19388570_19389764;chr2L_19388570_19389926 chr2L_19388570_19389935 chr2L_19388474_19388569;chr2L_19389936_19390022 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4833234_4834454 chrX_4833234_4834343 chrX_4833206_4833233;chrX_4834455_4834880 6.29 NA NA 0.00 NA NA 9.68 4.00 6.12 NA NA 0.00 NA 0.00 NA 6.67 10.53 NA 0.00 6.45 NA 26.67 NA NA NA NA NA NA NA 11.11 NA NA 6.06 8.33 NA NA NA NA NA NA NA 10.71 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 7.69 NA NA NA K intron_retention Atpalpha,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16792336_16796604 chr3R_16792335_16792336;chr3R_16796604_16796605 chr3R_16792236_16792335;chr3R_16796605_16796699 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA 100.00 100.00 NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD BtbVII,I_chr3L_3150858_3150927,I_chr3L_3151185_3151263 chr3L + chr3L_3150843_3150927 chr3L_3150858_3150927 chr3L_3150928_3151027;chr3L_3150758_3150842 5.19 5.19 11.36 6.31 4.00 9.84 9.18 3.53 4.37 3.85 8.57 5.08 3.45 10.00 26.73 12.07 6.98 9.17 4.00 6.64 8.05 2.99 6.13 3.95 4.67 2.53 7.69 5.04 5.15 5.32 7.06 7.14 4.35 5.56 5.00 1.71 3.52 1.71 7.59 3.70 4.55 6.25 1.30 5.11 4.31 9.09 1.52 6.19 7.25 5.98 4.49 7.84 5.98 1.11 7.21 9.32 4.46 3.45 K intron_retention CG11009,I_chr3L_12844823_12845526,I_chr3L_12845441_12845526 chr3L + chr3L_12845622_12845715 chr3L_12845621_12845622;chr3L_12845715_12845716 chr3L_12845530_12845621;chr3L_12845716_12845816 6.45 3.45 5.71 8.00 0.00 10.00 NA 15.38 15.69 NA 8.70 11.43 14.29 8.33 15.79 6.25 9.09 0.00 8.33 7.27 0.00 2.99 8.33 9.52 4.35 0.00 9.09 8.70 0.00 4.26 6.38 2.60 6.73 9.43 2.86 0.00 5.41 0.00 0.00 3.70 5.63 11.76 10.00 13.64 0.00 4.94 8.47 9.76 11.11 8.05 5.26 6.06 12.50 6.45 6.25 0.00 7.14 6.45 K intron_retention CG4091,I_chr2R_19588114_19588638,I_chr2R_19588393_19588638,I_chr2R_19588393_19588935,noncoding_8958,RI_chr2R_19589178_19589633 chr2R - chr2R_19588114_19589633 chr2R_19588113_19588114;chr2R_19589633_19589634 chr2R_19588014_19588113;chr2R_19589634_19589733 3.60 5.88 4.48 0.00 0.00 0.00 7.69 3.10 6.86 NA 8.11 6.25 3.70 4.00 7.58 5.56 0.00 11.76 0.00 5.61 5.77 3.03 3.51 5.88 5.26 4.00 4.84 10.00 15.38 2.70 6.33 3.33 0.00 2.33 0.00 7.14 1.92 0.00 3.12 2.90 0.00 4.04 0.00 0.00 0.00 0.00 7.32 12.50 2.17 6.98 1.43 0.00 0.00 8.33 4.35 8.82 0.00 0.00 K alternative_donor Paip2,I_chr3R_8809774_8809832 chr3R + chr3R_8809770_8809832 chr3R_8809774_8809832 chr3R_8809833_8809932;chr3R_8809674_8809769 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.99 1.83 0.00 0.00 1.10 1.14 0.00 0.58 0.00 0.00 0.00 0.00 2.63 10.42 3.77 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.57 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor d4 chr2R + chr2R_1182569_1182620;chr2R_1182563_1182620;chr2R_1182566_1182620 chr2R_1182573_1182620 chr2R_1182621_1183461;chr2R_1182302_1182562 1.82 0.00 0.00 1.49 0.00 2.63 1.64 1.85 1.94 0.00 2.56 1.96 3.33 3.12 2.70 1.82 0.00 0.00 3.23 1.92 0.00 0.00 2.13 0.00 3.12 0.00 1.89 2.56 1.92 2.50 3.45 2.27 1.67 2.00 0.00 0.00 1.79 0.00 0.00 3.08 2.44 2.86 3.57 0.00 1.72 2.17 0.00 1.96 1.67 1.75 0.00 3.57 1.82 0.00 2.50 2.22 1.18 1.35 K alternative_donor CycT,I_chr3L_17548631_17550687 chr3L - chr3L_17548631_17549473 chr3L_17548631_17549242 chr3L_17548531_17548630;chr3L_17549474_17549519 24.07 23.73 22.73 50.00 25.00 29.41 24.07 24.73 24.11 23.94 41.18 26.92 19.61 30.19 28.07 17.31 30.77 34.88 34.78 23.57 37.84 22.45 21.74 21.92 24.62 38.46 32.22 38.38 29.23 25.30 35.48 14.81 26.58 22.22 18.33 21.13 17.88 19.35 16.41 24.59 22.22 23.73 31.71 19.18 19.23 30.00 25.00 31.08 22.64 21.74 22.09 20.00 21.21 13.51 31.25 17.65 20.59 30.56 K intron_retention CG9139,scf,CG9149 chr3L + chr3L_1296180_1296264 chr3L_1296179_1296180;chr3L_1296264_1296265 chr3L_1295941_1296179;chr3L_1296265_1296468 0.00 2.33 0.00 0.00 8.33 6.06 3.92 8.00 4.69 0.00 0.00 6.90 7.14 3.70 0.00 0.00 0.00 0.00 3.57 1.67 0.00 0.00 9.26 0.00 0.00 0.00 1.96 3.33 0.00 0.00 0.00 0.00 4.88 2.27 4.35 0.00 4.55 0.00 8.51 5.26 0.00 0.00 0.00 0.00 0.00 0.00 4.17 4.88 2.90 10.81 6.56 0.00 0.00 0.00 0.00 0.00 6.45 0.00 K jcn_only_AA Vap-33-1 chrX + chrX_3843406_3843513;chrX_3843406_3845447 chrX_3843406_3843520 chrX_3843337_3843405 0.00 0.00 0.00 1.10 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 1.22 0.00 0.00 0.00 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.81 K jcn_only_AD CG6178 chr3R + chr3R_19978326_19978811;chr3R_19978271_19978811 chr3R_19978381_19978811 chr3R_19978812_19979489;chr3R_19978101_19978270 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4119 chrX + chrX_5560351_5560409 chrX_5560350_5560351;chrX_5560409_5560410 chrX_5560108_5560350;chrX_5560410_5560501 91.67 90.00 88.24 94.44 94.12 93.75 90.00 94.74 97.22 91.67 94.44 96.55 93.75 92.31 89.47 94.12 92.86 88.89 87.50 96.00 86.67 78.57 95.65 79.17 84.62 95.45 96.15 83.33 97.22 96.67 93.33 75.00 88.89 88.46 100.00 96.67 78.72 85.71 81.48 87.10 95.24 86.49 93.75 93.33 77.27 91.30 90.00 94.29 96.43 75.00 87.50 87.50 86.67 76.47 95.24 94.74 87.50 94.74 N jcn_only_AA Moca-cyp chr3R + chr3R_24167182_24167348;chr3R_24167182_24167249;chr3R_24167182_24167906;chr3R_24167182_24167260 chr3R_24167182_24167243 chr3R_24167094_24167181;chr3R_24167907_24167936 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 11.29 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 K alternative_acceptor skpA chrX + chrX_550638_551136 chrX_550638_551131 chrX_550585_550637;chrX_551137_551937 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 93.33 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention vimar,CG30156 chr2R - chr2R_2869191_2869247 chr2R_2869190_2869191;chr2R_2869247_2869248 chr2R_2869159_2869190;chr2R_2869248_2869291 7.92 0.00 0.00 NA NA NA 14.29 0.00 11.11 NA NA 4.76 NA NA 22.22 17.39 14.29 NA 6.25 11.76 NA NA 12.50 NA NA NA 0.00 NA NA NA NA NA NA 0.00 7.14 NA NA NA 10.00 3.85 NA 11.11 NA NA NA 0.00 8.70 NA 17.65 10.53 NA NA NA 6.25 5.00 9.52 0.00 NA K alternative_donor crol,I_chr2L_11799403_11802904 chr2L - chr2L_11800323_11802904;chr2L_11800323_11802370;chr2L_11800323_11802343 chr2L_11800323_11802286 chr2L_11800155_11800322;chr2L_11802905_11803004 46.37 48.06 42.15 28.31 41.30 45.50 46.39 53.33 45.97 62.26 48.63 46.37 49.74 43.84 41.54 54.23 51.12 34.86 44.90 44.96 51.55 32.19 45.38 44.78 43.59 41.78 44.47 29.98 54.46 47.06 46.38 52.20 49.91 50.00 41.94 42.23 44.60 41.19 45.93 54.09 53.23 44.02 49.45 50.15 43.97 49.17 46.12 55.70 45.61 49.42 50.64 45.25 53.19 48.00 41.50 48.28 51.35 54.81 K jcn_only_AA csul chr2R + chr2R_12152628_12152704;chr2R_12152628_12152686 chr2R_12152628_12152671 chr2R_12152244_12152627;chr2R_12152705_12153131 43.14 47.37 37.93 43.62 41.07 42.11 53.33 40.45 39.71 53.85 43.24 45.83 50.00 40.54 39.39 51.92 51.35 30.43 47.54 39.25 40.43 45.90 25.71 36.67 61.76 56.14 22.39 34.12 50.82 32.00 49.09 42.86 33.33 47.06 38.89 36.54 36.08 40.91 52.87 44.25 54.32 44.04 54.55 49.15 43.48 48.33 35.29 43.14 52.08 39.53 46.58 41.03 35.09 48.15 45.61 35.00 39.74 40.00 K cassette Nrx-IV chr3L + chr3L_12142009_12145276;chr3L_12142009_12144919 chr3L_12142009_12144310;chr3L_12144508_12145276,chr3L_12144508_12144919 chr3L_12144311_12144507 chr3L_12141892_12142008;chr3L_12145277_12145418 38.46 34.21 35.14 20.31 30.30 27.91 29.63 43.18 28.72 36.00 26.67 48.98 50.00 41.94 30.19 29.79 38.46 44.00 21.62 38.55 22.58 35.00 43.02 53.49 51.52 33.33 44.64 37.04 22.22 50.00 61.22 63.64 71.88 30.77 51.72 86.67 44.59 43.48 38.89 49.09 28.57 31.88 33.33 43.10 35.29 50.00 41.18 57.78 36.49 33.33 46.30 37.84 34.62 66.67 31.91 47.37 25.00 66.67 K intron_retention CG14220 chrX - chrX_19495378_19495436 chrX_19495377_19495378;chrX_19495436_19495437 chrX_19494672_19495377;chrX_19495437_19495545 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.06 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Mpk2,I_chr3R_19977468_19977530,F_chr3R_19985127_19985197 chr3R - chr3R_19977468_19977567 chr3R_19977468_19977530 chr3R_19977368_19977467;chr3R_19977568_19977630 2.78 0.00 14.29 6.67 NA NA 4.76 0.00 3.12 NA 0.00 0.00 0.00 NA 5.00 2.86 5.56 0.00 NA 2.38 6.67 3.45 0.00 0.00 NA 0.00 3.70 6.67 19.05 5.26 3.45 4.55 0.00 0.00 0.00 NA 0.00 NA 0.00 2.70 4.55 5.88 NA 0.00 0.00 5.00 0.00 3.85 8.82 NA 3.57 0.00 0.00 NA 4.35 0.00 0.00 3.12 K alternative_donor RhoGEF3,I_chr3L_298140_298220 chr3L + chr3L_301105_301162 chr3L_301109_301162 chr3L_301163_301681;chr3L_300901_301104 100.00 100.00 96.77 100.00 95.24 96.88 100.00 97.62 100.00 94.74 95.00 100.00 100.00 100.00 96.67 100.00 100.00 95.65 100.00 98.90 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 95.45 100.00 96.15 100.00 100.00 96.43 97.14 98.31 100.00 98.36 100.00 100.00 94.44 100.00 95.65 97.83 100.00 96.55 97.87 96.77 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention TepIV,EI_chr2L_19548696_19549582 chr2L + chr2L_19553916_19553975 chr2L_19553915_19553916;chr2L_19553975_19553976 chr2L_19553362_19553915;chr2L_19553976_19556092 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.61 1.17 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 K intron_retention CG3408,I_chr3L_9501587_9501663,RI_chr3L_9501725_9502450,I_chr3L_9504402_9504516 chr3L - chr3L_9501725_9502438 chr3L_9501724_9501725;chr3L_9502438_9502439 chr3L_9501665_9501724;chr3L_9502439_9502693 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 5.56 0.00 0.00 NA 0.00 0.00 NA 2.94 0.00 NA NA NA NA NA NA 0.00 NA 0.00 K alternative_donor sd,noncoding_23930,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15706472_15707881;chrX_15706564_15707881 chrX_15706305_15707881 chrX_15707882_15708324;chrX_15706259_15706304 0.00 0.00 14.29 0.00 0.00 10.00 14.29 0.00 0.00 NA 0.00 9.52 NA 7.69 0.00 NA 14.29 0.00 0.00 3.23 0.00 0.00 9.09 10.00 NA 0.00 10.00 0.00 0.00 0.00 7.14 0.00 6.25 7.14 0.00 NA 0.00 0.00 0.00 6.25 0.00 0.00 16.67 33.33 0.00 14.29 0.00 3.70 5.00 0.00 12.50 0.00 NA 0.00 0.00 20.00 0.00 0.00 K alternative_acceptor F_chr2L_5045484_5046146,His3_3A chr2L + chr2L_5055153_5055251 chr2L_5055153_5055206 chr2L_5055058_5055152;chr2L_5055252_5055540 100.00 100.00 100.00 100.00 98.86 100.00 99.42 100.00 99.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.33 100.00 100.00 99.16 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.35 100.00 100.00 100.00 98.86 100.00 99.32 100.00 99.57 100.00 100.00 99.34 99.21 100.00 98.68 100.00 99.12 98.94 100.00 100.00 100.00 100.00 100.00 100.00 98.96 K intron_retention CG13367 chrX + chrX_539947_540022 chrX_539946_539947;chrX_540022_540023 chrX_538794_539946;chrX_540023_540419 0.00 0.00 NA 6.25 NA NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 6.25 0.00 NA 4.17 0.00 NA NA 0.00 6.67 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 5.56 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention Dscam,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3250700_3255892 chr2R_3250699_3250700;chr2R_3255892_3255893 chr2R_3250653_3250699;chr2R_3255893_3255920 75.00 NA NA 90.91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Arp87C chr3R + chr3R_8517592_8518364 chr3R_8517591_8517592;chr3R_8518364_8518365 chr3R_8517455_8517591;chr3R_8518365_8518429 0.00 2.50 0.00 0.00 0.00 1.18 0.00 0.93 1.77 0.00 0.00 0.00 1.32 2.41 1.87 1.74 0.00 0.00 0.00 0.00 1.16 3.53 0.00 0.00 0.00 2.70 2.33 0.00 0.00 0.00 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 1.06 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 1.01 2.22 0.00 0.00 K intron_retention PPP4R2r chrX + chrX_10373003_10373505 chrX_10373002_10373003;chrX_10373505_10373506 chrX_10372866_10373002;chrX_10373506_10373750 19.08 20.00 13.04 13.89 NA 13.33 24.14 10.00 18.18 NA 15.38 12.12 25.00 9.09 33.33 15.52 28.57 29.41 19.23 22.50 18.18 0.00 24.00 18.75 NA 5.56 33.33 NA NA NA 24.14 NA 20.00 20.93 11.76 NA 6.67 NA NA 30.00 15.38 18.92 30.77 50.00 NA 18.18 33.33 29.41 14.81 NA 20.83 NA NA NA 17.24 14.29 30.77 33.33 K jcn_only_AA CG31304 chr3R - chr3R_10926146_10926210 chr3R_10926149_10926210 chr3R_10926211_10926279;chr3R_10925968_10926145 42.44 22.22 45.83 NA NA NA 45.71 52.17 36.59 NA NA 42.86 NA NA 50.00 35.00 NA NA NA 46.43 50.00 51.22 42.62 41.67 26.09 NA 52.78 NA 50.00 33.33 NA NA 42.50 42.50 NA 40.91 42.37 33.33 43.48 42.22 NA 36.84 45.45 43.84 NA 34.78 NA NA 31.82 38.10 38.46 35.29 25.00 NA 60.71 42.86 40.00 NA K intron_retention CG9143 chr2R - chr2R_16164844_16164901 chr2R_16164843_16164844;chr2R_16164901_16164902 chr2R_16164724_16164843;chr2R_16164902_16166432 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor pelo,I_chr2L_9707821_9708144,I_chr2L_9707891_9708144,I_chr2L_9708081_9708144 chr2L + chr2L_9707891_9708144;chr2L_9708081_9708144;chr2L_9706747_9708144 chr2L_9707821_9708144 chr2L_9708145_9708244;chr2L_9706647_9706746 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 1.09 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 2.56 0.00 1.37 0.00 0.00 1.59 1.54 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 1.69 0.00 0.00 0.00 1.23 0.00 1.30 0.00 0.00 0.00 0.00 0.00 1.15 1.27 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17912,I_chr2L_16749189_16749266 chr2L + chr2L_16743571_16743759 chr2L_16743570_16743571;chr2L_16743759_16743760 chr2L_16743305_16743570;chr2L_16743760_16744067 1.11 1.85 0.00 3.15 0.00 1.39 0.00 1.99 3.91 0.00 3.64 1.73 0.00 0.00 0.00 0.76 0.00 2.67 4.00 1.91 3.45 0.00 0.00 1.15 0.00 1.25 5.56 6.02 0.00 3.28 1.80 0.00 0.00 5.30 0.00 0.00 0.00 0.00 2.78 1.83 0.00 1.35 0.00 0.00 0.00 1.96 0.00 2.90 2.47 2.60 1.11 0.00 0.00 2.44 3.51 1.59 0.00 0.00 N jcn_only_AD CG1494 chrX + chrX_21159081_21159147;chrX_21158242_21159147 chrX_21159059_21159147 chrX_21159148_21159527;chrX_21157788_21158241 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3563,R_chr3R_10568322_10613785,I_chr3R_10615218_10615284,F_chr3R_10620137_10620250 chr3R + chr3R_10575339_10575927 chr3R_10575338_10575339;chr3R_10575927_10575928 chr3R_10575323_10575338;chr3R_10575928_10575995 60.00 77.78 52.94 52.00 NA 57.14 60.87 79.31 53.33 NA NA 54.05 50.00 45.45 66.67 61.11 70.00 77.78 71.43 35.14 66.67 73.68 55.00 60.00 NA 66.67 NA 87.50 63.64 63.64 60.00 NA 36.36 57.14 53.33 75.00 NA NA NA 59.09 NA 59.09 46.15 66.67 NA 60.00 NA 69.23 58.82 NA 47.37 60.00 NA NA 38.89 NA NA NA K intron_retention Den1 chr2R + chr2R_8225396_8225456 chr2R_8225395_8225396;chr2R_8225456_8225457 chr2R_8225307_8225395;chr2R_8225457_8225546 100.00 100.00 100.00 96.30 NA NA 95.00 100.00 95.83 NA NA 100.00 100.00 100.00 100.00 95.24 87.50 100.00 100.00 95.45 100.00 90.00 93.33 100.00 100.00 92.86 100.00 NA 91.67 88.89 97.78 88.89 100.00 94.44 91.67 100.00 NA NA 91.67 94.12 100.00 100.00 100.00 100.00 90.00 94.12 90.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 82.61 K intron_retention musashi,C_chr3R_21387506_21389801 chr3R + chr3R_21421325_21425228 chr3R_21421324_21421325;chr3R_21425228_21425229 chr3R_21421040_21421324;chr3R_21425229_21425932 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 1.77 0.00 0.00 1.15 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Sdc,I_chr2R_17286819_17367595,I_chr2R_17324594_17367595 chr2R - chr2R_17368045_17368518;chr2R_17367862_17368518 chr2R_17367884_17368518 chr2R_17368519_17368632;chr2R_17367596_17367861 4.65 NA NA 9.68 NA 0.00 9.52 2.70 4.55 NA NA 7.69 0.00 8.70 NA 4.55 0.00 7.69 4.76 4.35 NA NA NA NA NA 11.76 NA NA 6.67 NA 3.12 NA NA 7.32 NA NA NA NA NA NA 7.14 3.45 0.00 NA NA 0.00 NA 0.00 8.33 NA 8.33 NA NA NA 5.56 NA NA 2.94 K jcn_only_AA rdgA chrX + chrX_8910362_8911891;chrX_8910362_8911894 chrX_8910362_8911876 chrX_8910158_8910361;chrX_8911895_8912021 4.17 NA NA NA NA 10.00 NA NA 4.00 NA NA 4.35 NA NA NA NA NA NA NA 3.33 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 6.90 NA NA 3.57 NA 5.56 NA NA 7.69 NA NA NA NA NA NA 3.57 NA NA NA NA NA 6.67 NA NA NA K cassette Roc2 chr2R - chr2R_7565960_7566774 chr2R_7565960_7566302;chr2R_7566399_7566774 chr2R_7566303_7566398 chr2R_7565711_7565959;chr2R_7566775_7566837 0.00 NA NA 7.14 NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Spn5,CG6687 chr3R - chr3R_11030270_11032070 chr3R_11030269_11030270;chr3R_11032070_11032071 chr3R_11029272_11030269;chr3R_11032071_11032377 0.00 0.00 0.00 0.00 0.00 0.00 3.12 4.00 2.38 3.57 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 5.00 2.65 4.17 4.21 0.00 0.00 2.27 0.00 0.00 1.40 4.49 0.00 4.62 2.82 2.50 0.00 0.00 0.00 0.00 0.00 3.08 1.89 0.00 1.72 0.00 0.00 3.30 4.88 0.00 2.70 2.65 2.41 1.15 4.08 0.00 0.00 0.00 0.00 1.53 0.58 K intron_retention Pp1-87B chr3R - chr3R_8250239_8250332 chr3R_8250238_8250239;chr3R_8250332_8250333 chr3R_8249673_8250238;chr3R_8250333_8251639 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.50 4.76 9.91 0.00 0.00 0.72 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 1.12 0.00 1.11 0.00 0.00 0.62 0.68 0.00 0.00 0.53 0.52 1.08 0.00 0.00 1.31 0.00 0.51 0.00 0.60 K alternative_acceptor csul chr2R + chr2R_12152628_12152704;chr2R_12152628_12152686 chr2R_12152628_12152671 chr2R_12152244_12152627;chr2R_12152705_12153131 34.78 36.36 30.00 35.29 33.33 33.33 46.67 33.33 32.69 44.44 40.00 38.24 41.18 37.50 32.00 42.86 42.86 24.00 36.36 30.95 33.33 37.50 20.69 32.00 54.55 45.00 15.38 23.33 42.86 24.00 40.00 37.50 25.00 40.00 30.43 26.32 28.95 30.43 40.74 34.29 46.15 34.21 42.86 40.00 34.78 35.00 28.57 33.33 44.12 31.58 37.50 35.71 27.27 40.00 35.00 27.27 31.03 31.25 K jcn_only_AD CG18619,I_chr2L_10264634_10264770,RI_chr2L_10265562_10265628 chr2L + chr2L_10264886_10264946 chr2L_10264890_10264946 chr2L_10264947_10265012;chr2L_10264822_10264885 57.14 53.10 61.32 49.77 51.72 57.84 60.42 55.82 53.11 62.37 56.96 57.87 70.07 55.37 57.14 57.51 52.56 65.09 51.01 64.96 55.56 70.13 62.07 57.72 56.00 52.80 55.81 62.79 64.53 48.96 57.45 60.56 55.05 57.79 57.66 64.71 65.91 56.84 58.02 55.04 52.69 55.67 57.14 59.82 54.61 55.93 56.94 65.44 56.92 59.09 54.33 60.19 57.61 52.29 60.87 52.15 50.34 66.36 K alternative_acceptor CG13585,RI_chr2R_20420065_20420105,E_chr2R_20420167_20420418 chr2R + chr2R_20420065_20420120 chr2R_20420065_20420105 chr2R_20419965_20420064;chr2R_20420121_20420166 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 K intron_retention sar1,I_chr3R_18184656_18185246,I_chr3R_18185015_18185246,I_chr3R_18185148_18185246 chr3R + chr3R_18184351_18185246 chr3R_18184350_18184351;chr3R_18185246_18185247 chr3R_18184285_18184350;chr3R_18185247_18185346 0.00 0.00 0.00 0.26 0.00 0.00 1.15 0.00 0.60 0.00 2.11 0.44 1.75 0.00 0.00 0.00 0.52 0.41 0.00 0.00 1.69 0.83 0.90 0.00 1.15 0.00 0.66 1.80 0.00 0.00 0.68 0.46 0.00 0.53 0.00 0.00 0.66 0.00 0.68 0.00 0.00 0.20 0.00 0.00 0.00 0.46 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 K alternative_donor Mi-2 chr3L - chr3L_19881715_19903142 chr3L_19881715_19881800 chr3L_19881638_19881714;chr3L_19903143_19903321 44.93 47.95 43.84 44.14 58.70 41.79 47.92 37.60 53.06 54.72 51.02 45.11 54.90 37.33 42.67 34.78 47.37 41.54 41.43 45.27 45.28 61.42 47.50 61.04 44.93 30.59 52.94 49.06 39.60 36.70 36.25 44.44 38.93 44.92 41.03 43.82 64.49 57.81 56.86 38.41 43.64 45.32 42.62 41.75 57.41 35.11 51.56 33.09 40.54 70.18 46.23 49.09 50.82 49.02 38.64 44.44 52.24 41.58 K intron_retention osa,R_chr3R_13525411_13533475,I_chr3R_13525426_13525859 chr3R - chr3R_13525426_13533492 chr3R_13525425_13525426;chr3R_13533492_13533493 chr3R_13525326_13525425;chr3R_13533493_13533575 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.43 0.00 0.00 1.75 0.00 0.00 2.02 1.90 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9776 chr3R - chr3R_153800_153858 chr3R_153799_153800;chr3R_153858_153859 chr3R_153773_153799;chr3R_153859_154129 91.88 NA NA 95.83 NA NA 73.33 90.91 100.00 NA NA 100.00 NA NA NA 92.86 NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA 77.78 NA NA 88.89 NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA K jcn_only_AD G-oalpha47A chr2R + chr2R_6325600_6326879 chr2R_6325612_6326879 chr2R_6326880_6326950;chr2R_6325501_6325599 95.24 NA NA NA NA NA NA NA 92.86 NA NA 90.00 NA NA NA 90.62 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA 95.24 NA NA NA NA NA 96.30 NA NA NA 100.00 NA NA NA NA NA NA 95.24 NA NA NA NA NA NA NA K intron_retention shep,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5155711_5156066 chr3L_5155710_5155711;chr3L_5156066_5156067 chr3L_5155556_5155710;chr3L_5156067_5156229 1.60 0.78 0.00 1.91 1.75 1.64 1.15 1.59 1.86 0.00 1.60 1.84 4.73 1.78 2.45 1.04 2.86 1.97 1.11 1.38 1.95 0.82 1.90 1.75 1.67 0.00 1.50 1.48 1.84 1.17 0.50 1.61 1.63 1.74 2.41 3.48 1.27 0.00 2.01 2.20 1.38 1.42 1.39 2.14 0.37 0.75 1.42 3.45 1.67 0.00 2.40 0.00 1.57 0.00 1.81 2.97 0.00 1.12 K alternative_donor dorsal,RI_chr2L_17438018_17439189,FI_chr2L_17449369_17450215,noncoding_3500,RI_chr2L_17450002_17450219 chr2L - chr2L_17449369_17449875;chr2L_17449369_17450219;chr2L_17449369_17450310;chr2L_17449369_17450215 chr2L_17449369_17450325 chr2L_17449296_17449368;chr2L_17450326_17450359 0.00 0.00 0.00 1.61 0.00 0.00 1.69 0.00 2.82 0.00 0.00 0.00 3.23 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 1.43 0.00 0.00 0.00 0.00 3.57 0.00 0.00 6.25 0.00 0.00 0.00 2.94 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 K intron_retention noncoding_5243,l(2)44DEa,I_chr2R_4553577_4562151,I_chr2R_4553817_4565934,I_chr2R_4554300_4563976,I_chr2R_4565692_4565934 chr2R + chr2R_4568554_4568614 chr2R_4568553_4568554;chr2R_4568614_4568615 chr2R_4568290_4568553;chr2R_4568615_4568890 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.46 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21124522_21127849 chr2L_21124522_21125316;chr2L_21125440_21127849 chr2L_21125317_21125439 chr2L_21124443_21124521;chr2L_21127850_21128062 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 N jcn_only_AA CG13185 chr2R - chr2R_7757210_7757323 chr2R_7757263_7757323 chr2R_7757324_7757450;chr2R_7756791_7757209 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 89.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Lag1,RI_chrX_6153758_6161036,I_chrX_6160751_6160887,I_chrX_6160907_6161036 chrX - chrX_6160907_6161036;chrX_6153758_6161036 chrX_6160751_6161036 chrX_6161037_6161136 88.67 93.10 90.62 80.56 88.00 81.82 86.49 96.30 87.69 88.46 61.54 82.61 94.59 90.48 96.15 85.00 81.58 86.84 87.50 88.89 82.76 92.98 90.70 90.91 NA 93.06 84.85 NA 92.68 94.34 88.89 75.00 84.62 90.36 78.05 96.88 90.48 81.48 82.14 75.71 90.00 83.33 90.00 98.25 81.82 95.65 89.74 91.46 89.47 78.05 90.62 NA 85.71 78.57 91.30 84.44 82.35 97.70 K intron_retention CG3825 chr2R - chr2R_19863611_19863670 chr2R_19863610_19863611;chr2R_19863670_19863671 chr2R_19863040_19863610;chr2R_19863671_19864751 0.00 0.00 0.00 1.81 0.00 0.00 0.48 0.00 1.51 0.00 0.00 0.96 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 2.63 2.27 5.80 4.08 1.24 0.00 0.00 0.00 1.93 0.00 0.00 0.00 0.00 0.00 0.00 3.90 0.00 0.00 0.00 0.00 0.34 0.00 1.00 0.41 0.53 0.62 0.00 0.00 0.00 1.37 0.00 0.00 0.40 K intron_retention Dscam,F_chr2R_3219886_3225754,I_chr2R_3219886_3226532,FI_chr2R_3219886_3227659,F_chr2R_3219886_3228449,F_chr2R_3219886_3228832,F_chr2R_3226043_3235353,F_chr2R_3227948_3235353,F_chr2R_3228738_3235353,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3219886_3231783 chr2R_3219885_3219886;chr2R_3231783_3231784 chr2R_3219786_3219885;chr2R_3231784_3231796 35.71 NA 35.71 32.00 NA NA 35.71 45.00 41.67 NA NA 36.36 NA NA NA 41.67 38.46 NA 41.18 20.00 NA NA 22.22 NA NA NA NA NA NA 26.67 35.29 NA NA 41.67 NA NA NA NA NA NA NA 42.11 NA 28.57 NA NA NA 25.00 28.57 NA 23.08 NA NA NA 41.67 NA NA NA K alternative_last_exon Idh,I_chr3L_8351006_8351949,I_chr3L_8351036_8351655 chr3L - chr3L_8351006_8351655,chr3L_8351036_8351655 chr3L_8351173_8351655 chr3L_8349105_8351005 chr3L_8351116_8351172 chr3L_8351656_8351715 0.95 1.09 0.91 1.20 1.03 0.79 1.20 2.11 0.89 2.53 0.95 1.24 0.00 1.64 1.49 1.47 1.45 0.92 0.00 1.20 0.95 0.00 0.71 1.40 0.93 0.74 0.88 1.19 0.98 2.97 2.30 0.00 0.56 0.00 0.00 0.85 0.60 0.89 0.40 2.00 1.16 1.40 0.00 1.41 1.23 0.85 0.94 0.83 1.21 2.82 1.43 1.85 0.87 0.64 2.26 0.77 0.56 1.09 K intron_retention Qm,E_chr3L_23087825_23087922,RI_chr3L_23087947_23088093 chr3L - chr3L_23087947_23088005 chr3L_23087946_23087947;chr3L_23088005_23088006 chr3L_23087923_23087946;chr3L_23088006_23088022 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA arr,I_chr2R_9343426_9343486,I_chr2R_9347031_9370659 chr2R - chr2R_9369590_9370659 chr2R_9369720_9370659 chr2R_9370660_9370692;chr2R_9369281_9369589 12.50 NA NA NA NA NA 14.29 NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention beta-Spec chrX + chrX_17562697_17562783 chrX_17562696_17562697;chrX_17562783_17562784 chrX_17562530_17562696;chrX_17562784_17563224 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.36 0.00 K intron_retention CG3168 chrX - chrX_6616726_6617412 chrX_6616725_6616726;chrX_6617412_6617413 chrX_6614598_6616725;chrX_6617413_6618133 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 1.75 1.15 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention PhKgamma,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11595161_11597322 chrX_11595160_11595161;chrX_11597322_11597323 chrX_11595075_11595160;chrX_11597323_11597422 11.77 0.00 11.11 14.81 4.55 NA 29.03 7.41 10.53 23.53 6.67 12.77 NA 0.00 9.09 8.70 13.33 10.53 5.56 10.34 17.39 27.50 12.50 12.90 9.52 7.41 22.22 NA 18.75 13.64 6.67 0.00 17.65 11.54 15.79 13.04 14.00 8.33 8.70 17.24 36.36 7.69 22.22 16.00 7.69 10.00 2.78 13.04 13.16 15.62 17.65 15.79 5.00 7.14 12.00 4.17 4.65 12.50 K intron_retention vir-1,I_chr2L_12404131_12404435,RI_chr2L_12404178_12404435,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,I_chr2L_12421830_12423260 chr2L - chr2L_12404178_12404435 chr2L_12404177_12404178;chr2L_12404435_12404436 chr2L_12404124_12404177;chr2L_12404436_12404479 12.13 NA 11.11 16.07 NA NA 60.87 5.77 25.81 NA NA 15.38 NA NA 20.00 23.53 10.34 NA 12.50 10.53 0.00 17.39 NA NA NA 21.05 NA NA 25.00 NA 9.68 11.11 6.67 11.76 NA NA NA NA NA 15.79 11.11 6.00 12.50 30.77 8.00 21.88 NA 20.00 6.67 NA NA NA NA NA 10.53 NA NA 0.00 K intron_retention CG12065,CE_chrX_8469528_8477573 chrX + chrX_8479952_8480018 chrX_8479951_8479952;chrX_8480018_8480019 chrX_8479843_8479951;chrX_8480019_8480278 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.36 0.18 0.00 0.00 0.00 0.93 1.65 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor Xrp1,I_chr3R_14741648_14750799,I_chr3R_14750298_14750799 chr3R + chr3R_14749868_14750799 chr3R_14749868_14750009 chr3R_14749792_14749867;chr3R_14750800_14750899 18.52 8.82 13.79 33.77 6.25 13.04 21.18 22.03 18.57 20.83 40.00 20.00 37.50 18.18 12.00 24.44 8.57 27.78 16.22 33.33 20.00 9.52 20.88 21.15 23.53 12.00 17.33 23.68 16.67 25.00 15.07 19.05 26.09 17.78 23.53 11.29 22.22 16.00 13.33 19.05 23.08 17.65 14.81 15.29 15.38 18.52 15.15 20.83 23.81 20.63 26.09 20.59 10.53 13.64 16.00 15.15 13.51 13.64 K jcn_only_AD Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654157,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15652363_15654272;chrX_15652363_15654499 chrX_15652363_15654157 chrX_15652357_15652362;chrX_15654500_15654599 55.00 NA NA NA NA NA NA NA 55.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor chico,I_chr2L_10246534_10246899 chr2L - chr2L_10246040_10246899 chr2L_10246534_10246899 chr2L_10246900_10246999;chr2L_10245878_10246039 9.30 4.00 8.82 7.89 12.50 19.05 13.79 11.11 11.32 7.69 5.56 6.52 13.79 12.00 7.69 10.42 11.76 12.00 15.15 11.32 20.00 16.67 8.16 13.33 10.53 9.52 19.35 10.71 12.50 6.25 11.76 5.56 4.55 10.53 10.00 3.45 4.26 6.06 8.82 8.62 NA 10.53 9.52 7.50 6.67 9.09 4.76 3.45 12.24 7.41 9.76 9.09 0.00 6.67 6.67 4.76 9.52 4.17 K intron_retention CG4853,CG4866 chr2R + chr2R_13404034_13404089 chr2R_13404033_13404034;chr2R_13404089_13404090 chr2R_13403890_13404033;chr2R_13404090_13404295 0.00 0.00 0.00 1.54 0.00 0.00 1.47 1.37 1.37 0.00 0.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 5.45 4.35 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG7702,CG31230 chr3R + chr3R_14497097_14498553 chr3R_14497097_14498543 chr3R_14496860_14497096;chr3R_14498554_14500401 100.00 100.00 100.00 100.00 100.00 100.00 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 98.61 100.00 100.00 100.00 100.00 100.00 98.44 100.00 100.00 100.00 100.00 100.00 100.00 97.56 99.15 100.00 100.00 100.00 98.70 99.01 100.00 100.00 99.17 100.00 99.10 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention miple2,I_chr3L_274251_274594 chr3L + chr3L_274242_274594 chr3L_274241_274242;chr3L_274594_274595 chr3L_274151_274241;chr3L_274595_274694 1.32 0.00 0.00 2.92 0.00 0.00 3.28 0.00 0.67 0.00 0.00 3.30 0.00 1.96 0.00 4.35 0.00 0.00 0.00 0.72 0.00 2.15 1.63 2.42 1.32 3.92 2.27 0.00 0.00 0.00 1.59 1.49 2.67 3.49 4.69 6.52 2.05 0.00 1.69 1.71 1.33 4.12 0.00 0.65 1.67 0.00 1.21 0.00 1.03 0.81 1.98 2.50 2.04 2.00 1.61 0.00 1.75 0.00 K jcn_only_AD RI_chr3L_17480321_17481164,Oatp74D,chr3L_17480319_17480976.0,I_chr3L_17480594_17481164,I_chr3L_17500359_17500724 chr3L + chr3L_17480321_17481164;chr3L_17480290_17481164;chr3L_17480301_17481164 chr3L_17480594_17481164 chr3L_17481165_17481264;chr3L_17480274_17480289 3.85 NA NA NA NA NA NA NA 3.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N intron_retention R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083522_8089490 chr2L_8083521_8083522;chr2L_8089490_8089491 chr2L_8083444_8083521;chr2L_8089491_8089493 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.29 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD RpL18A,I_chr2R_13434492_13434554,I_chr2R_13434492_13434576 chr2R - chr2R_13434492_13434576;chr2R_13434492_13434913 chr2R_13434492_13434554 chr2R_13434392_13434491;chr2R_13434914_13434994 0.21 0.08 0.15 0.08 0.09 0.08 0.24 0.04 0.18 0.31 0.10 0.12 0.09 0.00 0.13 0.00 0.10 0.07 0.06 0.09 0.03 1.37 1.48 1.50 1.37 0.09 1.47 0.25 1.81 0.45 0.14 0.24 0.21 0.08 0.23 0.53 0.55 0.50 0.98 0.25 0.48 0.05 0.08 0.21 0.25 0.50 0.47 0.13 0.16 1.27 1.72 0.16 0.30 5.26 0.07 0.33 0.18 0.27 K intron_retention CG1161,RI_chr3R_1181273_1181459,I_chr3R_1182079_1182146 chr3R + chr3R_1181273_1181555 chr3R_1181272_1181273;chr3R_1181555_1181556 chr3R_1181173_1181272;chr3R_1181556_1181559 0.87 0.43 0.00 1.85 0.00 0.00 3.54 0.45 1.11 3.23 0.00 1.06 0.00 1.74 1.08 0.00 0.00 0.00 0.00 0.61 1.19 2.90 0.87 1.50 4.44 4.08 1.06 1.27 1.94 3.10 0.80 1.54 0.00 0.00 0.00 2.46 0.33 1.61 1.07 3.28 1.75 0.68 1.23 1.15 2.29 1.15 0.45 0.00 0.00 1.99 0.52 0.87 0.00 0.99 0.53 0.00 0.44 0.00 K jcn_only_AD I_chr3L_20306985_20307177,CG6680 chr3L + chr3L_20310517_20310578 chr3L_20310521_20310578 chr3L_20310579_20310888;chr3L_20310328_20310516 1.21 3.12 NA 7.14 NA 0.00 0.00 0.00 1.49 NA NA 0.00 0.00 2.33 6.67 2.04 NA NA 0.00 0.00 NA 3.57 0.00 0.00 NA NA 10.00 NA NA 0.00 0.00 2.17 3.33 2.70 0.00 NA 0.00 3.70 NA 5.56 0.00 2.63 NA 3.12 4.55 1.64 0.00 0.00 0.00 0.00 3.33 3.45 0.00 NA 0.00 3.57 2.06 0.94 K intron_retention CycB,I_chr2R_18692089_18692164 chr2R - chr2R_18692096_18692164 chr2R_18692095_18692096;chr2R_18692164_18692165 chr2R_18691518_18692095;chr2R_18692165_18692264 1.00 0.00 1.40 2.45 0.95 0.00 0.86 1.82 0.80 0.00 0.00 1.99 0.00 2.17 1.67 0.00 0.00 1.03 0.00 1.97 2.35 0.00 1.67 1.85 1.38 0.00 2.37 3.12 2.04 0.00 0.00 0.00 0.00 0.52 1.42 1.89 0.81 0.83 0.00 0.91 1.96 1.18 0.00 0.97 1.00 3.70 0.56 1.64 2.68 0.00 1.28 1.92 1.92 0.00 1.71 1.49 0.00 1.90 K jcn_only_AA PPP4R2r chrX + chrX_10373751_10373868 chrX_10373751_10373821 chrX_10373523_10373750;chrX_10373869_10374057 2.60 9.09 4.05 0.00 2.27 0.00 4.41 1.08 3.36 7.69 3.45 1.02 5.00 0.00 2.90 4.76 0.00 4.08 1.96 2.00 1.89 0.00 3.17 4.92 2.56 1.69 4.08 4.00 5.88 0.00 9.09 2.86 0.00 2.02 2.22 7.89 2.04 9.30 0.00 1.18 2.56 4.39 0.00 2.50 3.03 6.25 0.00 3.92 1.75 4.35 1.15 4.76 4.00 0.00 2.60 0.00 2.86 4.88 K intron_retention Tsp42Ed chr2R - chr2R_2897806_2897936 chr2R_2897805_2897806;chr2R_2897936_2897937 chr2R_2897608_2897805;chr2R_2897937_2898098 5.92 5.48 8.38 9.94 6.62 9.68 7.14 7.73 11.14 5.92 6.45 5.69 9.90 6.37 9.24 11.85 8.40 6.92 11.25 6.87 6.00 3.84 5.95 5.17 5.24 10.00 5.54 2.95 4.33 5.46 17.86 4.40 5.12 8.44 5.00 5.37 4.54 2.48 5.70 5.74 3.68 7.38 7.69 3.83 4.39 3.44 4.21 4.33 8.85 4.41 7.17 6.33 2.65 6.50 7.47 3.90 2.83 3.42 K intron_retention mRpS24 chr3R - chr3R_19988883_19988939 chr3R_19988882_19988883;chr3R_19988939_19988940 chr3R_19988820_19988882;chr3R_19988940_19989008 7.50 6.56 10.00 7.46 10.81 12.50 18.92 14.04 8.97 4.88 7.41 5.63 15.00 10.00 8.89 13.33 0.00 4.88 10.81 7.84 10.81 26.32 7.46 7.06 7.89 14.29 6.25 11.76 9.52 0.00 14.29 0.00 8.89 10.94 7.50 5.00 4.48 6.35 6.74 3.80 9.76 11.96 11.76 5.77 4.17 4.29 9.23 5.26 9.23 7.27 4.62 6.45 2.78 4.92 12.20 9.46 3.90 1.32 K alternative_acceptor Fibp,RI_chr3L_19810268_19810326 chr3L - chr3L_19809780_19809819;chr3L_19809775_19809819 chr3L_19809762_19809819 chr3L_19809820_19809920;chr3L_19809693_19809761 94.44 100.00 94.44 92.68 100.00 91.30 91.67 100.00 93.75 NA 94.12 93.33 NA 100.00 85.00 100.00 100.00 93.33 90.32 96.55 NA 100.00 90.91 100.00 78.57 100.00 92.86 NA 75.00 NA 78.12 94.74 100.00 100.00 NA 89.47 90.91 100.00 96.77 92.59 76.47 91.89 84.62 93.33 100.00 94.59 94.44 96.55 91.67 96.55 92.00 100.00 NA 94.44 100.00 96.55 97.37 92.59 K cassette hipk,RI_chr3L_548068_552227 chr3L + chr3L_543278_569526 chr3L_543278_547481;chr3L_548068_569526 chr3L_547482_548067 chr3L_543059_543277;chr3L_569527_569816 100.00 100.00 100.00 100.00 100.00 99.73 100.00 100.00 99.90 100.00 100.00 99.76 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.90 99.70 99.87 100.00 99.76 99.69 99.05 100.00 99.59 99.85 100.00 100.00 100.00 100.00 100.00 100.00 99.82 100.00 100.00 100.00 99.76 100.00 100.00 100.00 100.00 100.00 100.00 99.53 100.00 99.87 100.00 100.00 100.00 100.00 99.21 99.78 100.00 100.00 99.81 K intron_retention klett chrX - chrX_21496960_21497036 chrX_21496959_21496960;chrX_21497036_21497037 chrX_21496696_21496959;chrX_21497037_21497279 100.00 100.00 100.00 99.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.11 100.00 K intron_retention sle chr3R + chr3R_6159306_6159372 chr3R_6159305_6159306;chr3R_6159372_6159373 chr3R_6159219_6159305;chr3R_6159373_6161608 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA MB8.chr3R.pasa.66,CG1091,I_chr3R_2910029_2910096,RI_chr3R_2910490_2910686,RI_chr3R_2911041_2911135,RI_chr3R_2946518_2946663 chr3R - chr3R_2910029_2910096 chr3R_2910041_2910096 chr3R_2910097_2910162;chr3R_2909929_2910028 100.00 98.15 100.00 97.67 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 96.92 100.00 100.00 100.00 100.00 99.14 97.83 100.00 100.00 99.00 100.00 100.00 100.00 NA 98.36 98.70 100.00 100.00 100.00 98.28 97.62 100.00 100.00 100.00 99.02 97.83 97.87 98.48 100.00 97.14 100.00 100.00 100.00 93.65 98.77 100.00 98.77 100.00 100.00 100.00 100.00 100.00 100.00 97.73 K intron_retention slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,RI_chr2R_20289332_20289739,I_chr2R_20289332_20289846,I_chr2R_20289332_20290093 chr2R - chr2R_20289295_20289357 chr2R_20289294_20289295;chr2R_20289357_20289358 chr2R_20289232_20289294;chr2R_20289358_20289459 96.78 100.00 96.00 100.00 100.00 91.30 92.16 96.92 94.37 100.00 100.00 91.53 96.67 96.88 96.97 98.15 93.94 96.00 97.50 97.96 95.00 96.30 97.06 95.45 100.00 92.31 93.33 93.33 78.95 95.83 100.00 NA 96.67 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 98.04 92.59 96.55 NA 100.00 94.12 95.00 96.43 92.31 97.22 93.75 100.00 100.00 100.00 NA 91.67 93.75 K jcn_only_AA Nedd4,I_chr3L_17532828_17532882,I_chr3L_17532828_17533787,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17532828_17532882;chr3L_17532828_17533787 chr3L_17532828_17533790 chr3L_17532728_17532827;chr3L_17533791_17533887 91.17 NA NA 31.03 NA 96.67 87.50 84.62 93.88 NA NA 88.68 NA NA 97.22 90.00 NA 62.50 86.96 86.67 NA NA 91.43 100.00 NA 100.00 93.33 NA 90.91 NA 84.00 NA 92.00 91.67 96.00 92.86 92.11 93.75 93.33 87.27 NA 77.50 NA 87.50 NA NA NA 80.00 94.87 NA 83.87 93.75 NA NA 84.00 NA NA NA K jcn_only_AD Iap2,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11821325_11821703 chr2R_11821325_11821603 chr2R_11821304_11821324;chr2R_11821704_11822085 8.43 5.48 6.36 26.71 7.92 7.78 7.21 7.73 3.89 7.58 13.40 6.14 7.26 6.48 11.97 16.07 10.00 12.40 9.89 12.59 12.00 4.23 8.98 8.29 10.81 13.45 16.36 15.22 10.00 7.76 19.57 8.43 7.62 7.95 9.76 13.33 4.86 7.02 9.57 9.97 8.15 13.04 10.26 3.12 11.36 7.85 3.40 15.96 10.45 8.76 6.28 7.32 8.08 9.26 5.84 5.56 4.70 10.98 K alternative_acceptor CG10880,CG15386_CG42371 chr2L - chr2L_2215457_2215514;chr2L_2215454_2215514 chr2L_2215460_2215514 chr2L_2215515_2216288;chr2L_2215021_2215453 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA 83.33 100.00 NA NA NA 88.89 100.00 NA 87.50 NA NA NA NA NA NA NA NA NA 100.00 K jcn_only_AA RluA-2,I_chr2L_10480906_10481097 chr2L + chr2L_10481571_10481621;chr2L_10481571_10481646 chr2L_10481571_10481629 chr2L_10481509_10481570;chr2L_10481647_10481707 3.52 NA 5.00 5.26 NA NA 3.33 2.56 0.00 NA 0.00 0.00 0.00 NA 6.90 0.00 NA NA 0.00 5.66 NA 0.00 5.00 NA NA 8.33 0.00 NA 16.67 0.00 9.84 NA 3.70 0.00 4.76 NA NA NA 9.09 3.77 0.00 5.13 NA 5.00 0.00 5.41 4.17 5.71 2.70 NA 0.00 NA 0.00 12.50 0.00 11.54 NA 2.17 K jcn_only_AD MAN1,I_chr2R_19922148_19922210,I_chr2R_19939693_19939776,I_chr2R_19946657_19946733 chr2R + chr2R_19921944_19922210 chr2R_19921956_19922210 chr2R_19922211_19922310;chr2R_19921802_19921943 86.11 97.14 87.76 89.47 96.55 82.35 77.55 83.33 88.46 NA 67.86 84.52 NA 78.95 91.67 79.49 90.62 86.11 81.82 86.67 93.94 88.89 79.31 82.35 80.65 91.11 79.59 74.19 90.00 83.78 85.37 94.12 80.52 88.16 83.33 91.84 89.74 78.95 84.00 89.39 80.00 91.18 83.78 91.84 88.37 85.96 81.08 87.32 86.08 78.12 86.89 84.21 95.45 96.43 87.18 87.50 82.98 86.46 K jcn_only_AA l(2)NC136,I_chr2R_1545723_1546024 chr2R - chr2R_1549867_1549960 chr2R_1549882_1549960 chr2R_1549961_1550058;chr2R_1549732_1549866 100.00 100.00 100.00 100.00 100.00 95.24 100.00 99.38 99.47 96.67 98.39 98.13 100.00 100.00 98.78 99.48 100.00 100.00 98.26 100.00 100.00 100.00 100.00 97.92 100.00 100.00 98.39 97.50 100.00 100.00 100.00 100.00 100.00 99.48 100.00 100.00 97.67 100.00 100.00 98.65 97.56 99.30 98.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 97.56 NA 100.00 98.20 100.00 100.00 98.67 K intron_retention tefu,I_chr3R_11060517_11060585 chr3R - chr3R_11065127_11065183 chr3R_11065126_11065127;chr3R_11065183_11065184 chr3R_11065010_11065126;chr3R_11065184_11065248 0.00 0.00 0.00 1.72 0.00 0.00 6.25 0.00 7.81 NA 0.00 2.94 0.00 0.00 0.00 2.27 0.00 0.00 0.00 2.38 9.09 NA 7.14 0.00 0.00 12.50 9.09 NA NA NA 12.50 NA 5.56 0.00 0.00 5.26 0.00 0.00 0.00 0.00 NA 4.08 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K alternative_acceptor Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4847655_4847757;chrX_4847655_4848149 chrX_4847655_4848167 chrX_4847526_4847654;chrX_4848168_4848168 22.22 16.67 29.41 4.76 33.33 23.53 32.14 17.39 27.08 25.00 25.00 17.39 12.50 20.00 23.53 14.29 16.67 14.29 20.00 12.50 26.67 26.09 30.30 25.00 27.78 11.11 16.67 8.33 13.33 29.63 22.22 28.57 13.33 12.90 16.67 11.76 31.58 26.09 36.36 10.00 10.53 14.81 10.00 25.00 22.22 17.39 29.63 18.18 17.39 28.00 30.30 10.00 22.22 22.22 7.69 30.77 23.53 26.09 K alternative_acceptor CG15098,I_chr2R_14721883_14721980 chr2R - chr2R_14721883_14721980 chr2R_14721902_14721980 chr2R_14721981_14722049;chr2R_14721834_14721882 99.76 99.81 99.65 99.89 99.80 99.57 99.77 99.57 99.84 98.92 99.83 99.82 99.83 100.00 99.85 99.72 99.80 99.79 99.67 99.83 99.43 99.36 99.81 99.60 100.00 99.80 99.46 99.68 99.77 100.00 98.76 98.64 99.73 99.75 99.71 99.09 99.52 99.76 99.48 99.23 100.00 99.90 99.76 99.56 99.70 99.67 99.84 99.61 100.00 99.64 99.61 99.66 100.00 99.77 99.64 100.00 99.84 99.77 K intron_retention slv chr2R - chr2R_3969445_3969519 chr2R_3969444_3969445;chr2R_3969519_3969520 chr2R_3969367_3969444;chr2R_3969520_3969691 0.00 0.00 0.00 4.08 NA 0.00 0.00 7.89 6.90 NA NA 2.00 0.00 0.00 6.25 0.00 NA 0.00 0.00 1.54 5.56 0.00 0.00 0.00 0.00 0.00 4.35 NA 0.00 0.00 4.76 11.76 0.00 6.98 0.00 4.00 0.00 7.41 7.14 0.00 0.00 4.35 0.00 0.00 6.25 0.00 7.41 NA 4.08 0.00 6.67 0.00 0.00 0.00 3.03 0.00 0.00 6.25 K jcn_only_AA CG2774 chr2L + chr2L_3451244_3451306 chr2L_3451244_3451300 chr2L_3450358_3451243;chr2L_3451307_3451453 100.00 100.00 100.00 100.00 97.33 100.00 98.84 100.00 100.00 100.00 100.00 100.00 98.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.82 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.22 100.00 100.00 100.00 100.00 100.00 100.00 99.07 100.00 100.00 100.00 97.73 100.00 100.00 98.41 100.00 100.00 K intron_retention CG12012,CG12014 chr3L + chr3L_3376948_3376998 chr3L_3376947_3376948;chr3L_3376998_3376999 chr3L_3376786_3376947;chr3L_3376999_3377656 2.99 3.81 1.00 2.80 2.56 3.70 3.79 6.16 5.00 1.89 0.00 5.46 7.23 11.25 2.99 0.00 2.44 3.49 0.89 2.20 3.61 0.00 4.44 3.21 0.00 1.79 6.36 4.20 2.42 2.25 3.20 2.27 2.88 2.48 5.71 3.03 1.60 0.73 1.56 3.70 2.08 3.74 2.35 0.78 5.13 2.99 4.67 5.38 5.10 1.00 4.92 2.78 4.44 2.22 5.97 2.94 3.14 3.70 K intron_retention CG15445,REI_chrX_20988432_20988485,RI_chrX_20988432_20988489,REI_chrX_20988439_20988489,I_chrX_20988439_20988552 chrX + chrX_20988439_20988489 chrX_20988438_20988439;chrX_20988489_20988490 chrX_20988339_20988438;chrX_20988490_20988585 90.91 100.00 87.50 87.50 94.12 94.12 80.00 96.55 89.19 90.00 92.86 87.50 94.12 93.33 88.46 86.21 93.33 89.47 95.65 85.37 92.86 72.22 93.55 87.50 93.75 100.00 96.88 96.15 93.33 70.83 91.67 90.00 89.74 96.88 93.75 100.00 91.30 91.67 90.91 86.21 93.55 84.85 78.57 81.25 84.21 74.07 92.86 80.43 81.08 86.21 100.00 92.31 84.62 81.82 95.45 93.75 86.96 74.42 K multi_cassette cora,I_chr2R_15125277_15130573,I_chr2R_15125940_15130208,I_chr2R_15129291_15129988 chr2R + chr2R_15125940_15130208 chr2R_15125940_15128720;chr2R_15129291_15129678;chr2R_15129901_15129994;chr2R_15130091_15130208 chr2R_15128721_15129290;chr2R_15129679_15129900;chr2R_15129995_15130090 chr2R_15125887_15125939;chr2R_15130209_15130308 100.00 100.00 100.00 99.78 100.00 100.00 100.00 100.00 100.00 99.60 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.79 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG9143 chr2R - chr2R_16164667_16164723 chr2R_16164666_16164667;chr2R_16164723_16164724 chr2R_16164214_16164666;chr2R_16164724_16164843 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 12.50 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 4.35 0.00 NA NA NA NA 0.00 0.00 0.00 NA 0.00 5.56 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_263306_263801 chr4_263305_263306;chr4_263801_263802 chr4_263273_263305;chr4_263802_263839 72.73 NA NA 80.00 NA NA 85.71 66.67 78.26 NA NA 64.71 72.73 63.64 71.43 78.57 87.50 NA 84.62 81.25 60.00 NA NA NA NA 87.50 NA NA NA NA 60.00 NA NA 66.67 NA NA NA NA NA NA NA 61.11 72.73 NA NA NA NA NA 71.43 NA NA NA NA NA 81.82 NA NA NA N intron_retention orb2,I_chr3L_8942860_8947477 chr3L - chr3L_8939541_8940927 chr3L_8939540_8939541;chr3L_8940927_8940928 chr3L_8939438_8939540;chr3L_8940928_8940989 9.62 5.56 8.00 41.18 22.22 0.00 17.24 13.64 9.52 NA NA 3.51 11.11 13.33 4.35 8.82 12.50 0.00 12.50 12.00 NA 21.05 12.20 8.11 25.00 22.73 6.06 20.93 12.82 21.43 13.79 6.67 17.65 11.11 3.12 12.50 0.00 9.09 0.00 8.51 6.12 17.39 11.11 17.65 4.65 9.72 2.70 12.07 5.56 4.55 10.34 0.00 14.29 0.00 4.17 0.00 0.00 4.88 K intron_retention Mitf,I_chr4_1225009_1225220,I_chr4_1225890_1225947 chr4 + chr4_1224415_1225216 chr4_1224414_1224415;chr4_1225216_1225217 chr4_1224159_1224414;chr4_1225217_1225376 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA NA NA 0.00 NA NA 4.76 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 5.88 NA NA NA NA NA 0.00 NA NA NA K alternative_last_exon CG42324 chr3L + chr3L_3505087_3506074 chr3L_3505087_3505178 chr3L_3506075_3507207 chr3L_3505179_3505325 chr3L_3505011_3505086 0.00 0.00 0.00 0.00 NA 0.00 0.00 50.00 14.29 NA 0.00 0.00 NA 0.00 0.00 25.00 NA NA 33.33 NA NA 0.00 0.00 0.00 20.00 0.00 0.00 0.00 33.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 14.29 0.00 0.00 0.00 33.33 NA NA 0.00 NA 20.00 33.33 K alternative_donor AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9003728_9004854;chrX_9004021_9004854;chrX_9003790_9004854 chrX_9003918_9004854 chrX_9004855_9004862;chrX_9003721_9003727 6.67 9.09 7.14 4.17 NA 11.11 11.11 5.56 9.68 NA 14.29 5.26 7.69 4.55 6.67 5.13 11.11 14.29 4.55 3.57 25.00 0.00 4.76 0.00 25.00 9.09 11.11 NA 0.00 12.50 3.70 0.00 0.00 3.85 14.29 18.18 0.00 16.67 16.67 6.67 10.00 3.70 7.69 11.11 NA 16.67 0.00 6.67 3.45 14.29 6.67 9.09 33.33 NA 3.70 0.00 NA 0.00 K intron_retention mav,RI_chr4_645290_646129 chr4 - chr4_646331_646421 chr4_646330_646331;chr4_646421_646422 chr4_646135_646330;chr4_646422_646475 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 93.75 94.12 NA 100.00 100.00 100.00 97.50 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG10737 chr2R + chr2R_15062814_15063770;chr2R_15062814_15063692 chr2R_15062814_15063752 chr2R_15062592_15062813;chr2R_15063771_15063852 5.47 6.84 7.75 5.77 5.56 6.42 23.26 5.91 6.91 10.42 5.10 4.76 4.46 7.62 7.02 2.96 5.36 3.62 5.08 5.97 9.68 9.17 3.68 4.03 3.90 2.40 1.82 10.34 5.88 3.85 4.94 6.33 8.46 4.62 3.37 2.38 2.24 6.67 5.03 3.73 4.76 6.05 7.07 3.68 17.12 3.70 4.65 6.45 6.54 1.03 4.96 9.41 7.41 3.67 4.29 5.47 5.74 6.25 K intron_retention cora,I_chr2R_15125277_15130573,I_chr2R_15125940_15130208,I_chr2R_15129291_15129988 chr2R + chr2R_15130091_15130208 chr2R_15130090_15130091;chr2R_15130208_15130209 chr2R_15129995_15130090;chr2R_15130209_15130308 0.64 0.82 0.28 0.90 0.62 0.30 2.02 0.60 1.06 0.45 0.26 1.59 1.47 1.35 0.95 0.00 1.31 0.26 0.89 0.86 0.00 1.08 0.31 0.32 0.29 1.39 0.44 0.95 0.57 0.22 1.24 0.50 0.16 0.92 1.05 0.46 0.27 0.91 0.60 0.82 0.82 0.80 1.09 0.00 0.59 0.64 0.55 1.06 0.67 0.51 1.14 0.34 0.91 0.36 1.57 0.00 0.50 0.74 N jcn_only_AD rl,F_chr2RHet_333976_338428,noncoding_9454 chr2RHet + chr2RHet_333976_334551 chr2RHet_334247_334551 chr2RHet_334552_334614;chr2RHet_333929_333975 100.00 100.00 100.00 77.14 100.00 100.00 100.00 100.00 100.00 NA 100.00 83.64 100.00 100.00 100.00 91.67 100.00 100.00 79.49 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA NA 81.54 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585716_2586402;chr3L_2585733_2586402 chr3L_2585739_2586402 chr3L_2586403_2586502;chr3L_2585639_2585715 96.52 93.88 94.44 98.52 94.02 92.82 96.64 95.98 97.97 100.00 96.25 98.13 97.01 98.21 98.65 97.18 96.32 95.81 97.54 96.21 95.07 95.48 95.98 96.72 100.00 98.05 97.25 92.75 95.65 97.16 97.80 93.51 93.30 97.09 96.89 95.81 94.92 97.04 97.37 96.49 96.97 97.30 93.75 98.85 95.50 98.19 93.94 95.73 96.52 96.08 96.21 96.72 93.24 94.12 96.80 97.25 97.92 96.00 K intron_retention RI_chrX_1405134_1408515,CG32810 chrX + chrX_1409719_1411001 chrX_1409718_1409719;chrX_1411001_1411002 chrX_1409411_1409718;chrX_1411002_1411653 99.33 100.00 100.00 100.00 100.00 100.00 98.88 99.31 99.23 100.00 100.00 93.50 100.00 100.00 100.00 98.82 100.00 100.00 98.04 99.47 100.00 98.85 99.13 99.00 100.00 98.08 98.95 100.00 98.77 97.14 100.00 98.57 99.21 99.13 100.00 100.00 98.13 100.00 99.16 99.30 98.82 99.33 100.00 100.00 95.45 98.43 98.94 100.00 99.30 98.86 99.07 100.00 100.00 98.85 100.00 100.00 100.00 99.19 K intron_retention CG13472,I_chr3L_14783173_14784369 chr3L + chr3L_14782314_14782418 chr3L_14782313_14782314;chr3L_14782418_14782419 chr3L_14780193_14782313;chr3L_14782419_14782869 0.00 0.00 0.00 4.48 0.00 0.00 1.72 0.00 0.77 0.00 0.00 3.61 2.63 0.00 4.84 2.27 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.36 2.53 3.17 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 1.37 0.00 0.00 0.00 0.00 0.00 0.80 0.00 K alternative_donor CG4853,CG4866 chr2R + chr2R_13401922_13402084 chr2R_13401924_13402084 chr2R_13402085_13403034;chr2R_13401783_13401921 1.95 0.00 3.23 2.76 0.00 2.02 3.45 1.23 1.63 0.00 0.00 1.93 0.00 2.13 2.65 0.00 1.23 3.80 1.06 3.12 0.00 4.76 1.69 0.00 2.20 1.98 2.29 6.35 4.11 1.95 2.52 0.00 3.34 2.13 2.99 5.04 3.26 1.11 1.10 1.08 2.73 1.73 3.03 0.00 1.05 1.24 3.66 2.08 1.11 5.36 2.16 1.69 5.08 1.37 2.56 1.32 0.00 1.39 K jcn_only_AA Spf45 chr2L - chr2L_22959810_22959876 chr2L_22959816_22959876 chr2L_22959877_22960833;chr2L_22959612_22959809 99.49 98.63 99.28 98.94 97.10 100.00 98.33 99.69 99.58 97.14 100.00 99.58 99.22 99.32 99.35 99.56 100.00 100.00 99.53 99.53 98.94 100.00 100.00 99.34 99.28 100.00 99.56 100.00 99.49 99.18 99.19 99.49 98.97 99.69 98.74 99.33 96.43 99.11 100.00 99.63 99.32 99.28 99.28 100.00 100.00 99.49 99.28 99.71 99.71 99.55 100.00 99.15 100.00 99.26 99.57 98.81 99.55 98.88 K intron_retention d4 chr2R + chr2R_1182569_1182620 chr2R_1182568_1182569;chr2R_1182620_1182621 chr2R_1182302_1182568;chr2R_1182621_1183461 7.79 4.00 2.56 11.76 4.65 6.90 6.45 12.24 7.92 0.00 7.69 4.23 5.41 12.90 16.22 11.11 4.00 5.26 13.89 10.11 7.69 4.65 7.69 5.17 5.26 10.71 9.38 13.16 10.53 11.90 11.76 10.34 11.76 8.16 0.00 5.71 5.56 4.44 0.00 8.86 5.00 12.33 11.54 2.70 10.34 9.62 0.00 7.94 8.06 6.56 3.77 9.68 9.80 4.00 11.76 8.00 3.75 7.79 K intron_retention Akt1 chr3R + chr3R_11928682_11928752 chr3R_11928681_11928682;chr3R_11928752_11928753 chr3R_11928535_11928681;chr3R_11928753_11929070 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG3011,I_chrX_5808514_5808613 chrX - chrX_5808437_5808613 chrX_5808514_5808613 chrX_5808614_5808683;chrX_5808420_5808436 0.31 0.00 0.00 0.00 0.00 0.67 0.86 0.41 0.33 0.48 0.71 0.31 0.00 0.00 0.00 0.00 0.76 0.00 0.71 0.00 0.83 2.10 0.00 0.44 0.00 0.00 0.41 0.31 0.00 1.16 1.61 0.61 0.00 0.00 0.74 0.83 0.67 0.00 0.27 0.35 0.63 0.29 0.86 0.31 0.85 0.40 0.45 0.00 0.34 0.40 0.00 0.00 0.00 0.49 0.00 0.35 0.00 0.00 K intron_retention noncoding_16269,I_chr3R_8192634_8193249,GstD1 chr3R - chr3R_8194298_8194924 chr3R_8194297_8194298;chr3R_8194924_8194925 chr3R_8193539_8194297;chr3R_8194925_8194962 0.37 0.00 0.48 2.11 0.00 0.00 0.40 0.37 0.74 1.39 0.00 0.65 0.00 0.57 0.42 0.81 0.79 0.00 0.00 0.22 0.00 1.62 1.61 1.89 3.49 0.00 2.86 2.62 1.87 0.00 0.00 0.00 0.00 0.00 0.00 2.17 1.13 2.04 0.00 0.00 0.00 0.29 0.00 0.73 1.33 2.55 0.00 1.32 1.03 1.57 4.44 0.00 0.00 0.00 0.00 1.31 0.00 0.00 K intron_retention RpL12,I_chr2R_19948517_19948682 chr2R + chr2R_19947973_19948035 chr2R_19947972_19947973;chr2R_19948035_19948036 chr2R_19947923_19947972;chr2R_19948036_19948097 20.52 25.93 17.50 6.90 12.07 5.56 19.61 6.15 10.87 60.00 7.89 13.64 16.22 15.15 11.90 17.39 10.26 14.29 7.58 17.24 13.16 50.00 83.33 NA NA 39.44 54.55 50.00 91.38 NA 38.75 27.78 11.76 8.70 NA NA 55.00 NA NA 44.44 33.33 9.52 8.33 54.55 14.29 50.00 58.33 37.50 21.43 53.85 NA 60.00 28.57 NA 8.06 81.82 77.78 29.09 K intron_retention mbc,I_chr3R_19615584_19615649,I_chr3R_19625220_19625288 chr3R + chr3R_19620963_19622820 chr3R_19620962_19620963;chr3R_19622820_19622821 chr3R_19620788_19620962;chr3R_19622821_19625219 1.59 0.00 2.90 3.94 1.69 1.59 1.80 4.44 3.01 3.45 1.59 1.33 8.47 3.70 2.78 1.83 1.56 0.00 5.48 3.76 2.90 0.00 1.79 2.41 3.85 0.00 3.85 0.00 0.00 2.17 0.00 0.00 0.00 1.79 0.00 0.00 2.15 0.00 0.00 4.11 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 2.30 4.55 0.00 0.00 2.38 2.00 0.00 0.00 K intron_retention Rala,noncoding_21767 chrX - chrX_3604282_3613395 chrX_3604281_3604282;chrX_3613395_3613396 chrX_3604102_3604281;chrX_3613396_3613464 2.22 0.00 2.78 2.22 1.61 0.00 2.67 2.41 3.57 0.00 0.00 5.62 8.89 0.00 0.00 7.69 5.88 3.57 2.33 5.68 0.00 9.68 5.06 1.47 0.00 2.04 3.70 7.41 11.11 2.13 0.00 0.00 4.69 2.70 5.88 0.00 6.45 2.08 3.33 2.56 0.00 5.31 5.71 0.00 3.92 0.00 0.00 4.55 3.96 0.00 1.64 0.00 0.00 0.00 1.89 0.00 2.90 0.00 K cassette CG30421 chr2R + chr2R_20632363_20640193 chr2R_20632363_20638822;chr2R_20638907_20640193 chr2R_20638823_20638906 chr2R_20631351_20632362;chr2R_20640194_20640426 0.00 0.00 0.00 2.22 0.00 0.00 0.00 2.27 0.00 0.00 0.00 1.82 0.00 3.85 0.00 0.00 0.00 0.00 0.00 1.69 0.00 2.13 1.23 1.72 2.17 0.00 1.72 2.86 0.00 0.00 2.70 0.00 2.54 2.00 0.00 3.28 1.10 1.72 1.41 0.00 0.00 1.72 0.00 3.57 0.00 0.00 3.23 0.00 0.00 0.00 1.72 0.00 0.00 4.00 0.00 3.23 0.00 0.00 K intron_retention CG16817 chr3R + chr3R_5503809_5504441 chr3R_5503808_5503809;chr3R_5504441_5504442 chr3R_5503640_5503808;chr3R_5504442_5504698 65.16 NA NA 35.71 NA NA 26.09 NA 72.73 NA NA 69.23 NA NA 70.00 66.67 NA NA NA 58.33 NA NA NA NA NA NA 63.64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA 60.00 NA NA NA NA K intron_retention fax chr3L - chr3L_16398937_16400120 chr3L_16398936_16398937;chr3L_16400120_16400121 chr3L_16398602_16398936;chr3L_16400121_16400459 38.89 46.15 41.18 57.14 40.91 41.18 12.90 31.25 44.44 28.57 41.67 57.69 NA 57.14 40.91 38.89 31.25 43.75 50.00 44.44 34.78 21.79 25.42 33.33 38.89 50.00 33.33 50.00 31.03 30.77 43.75 38.46 36.84 36.00 33.33 55.56 40.38 24.24 45.65 28.95 42.86 40.62 40.00 33.33 50.00 22.22 20.00 60.00 29.17 31.82 25.00 37.50 20.83 42.11 50.00 38.10 30.56 40.00 K jcn_only_AA CG4877 chr3L + chr3L_16382721_16382785 chr3L_16382721_16382778 chr3L_16382505_16382720;chr3L_16382786_16382977 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 96.88 100.00 NA 100.00 NA NA 100.00 100.00 100.00 100.00 96.67 100.00 100.00 96.97 100.00 100.00 98.28 NA 100.00 96.67 100.00 NA 97.62 100.00 100.00 100.00 100.00 100.00 100.00 96.55 97.30 100.00 97.83 K jcn_only_AD CG17737,I_chr3L_3223527_3224313,I_chr3L_3223650_3223769,I_chr3L_3223943_3224313 chr3L + chr3L_3223527_3223769 chr3L_3223650_3223769 chr3L_3223770_3223869;chr3L_3223475_3223526 0.14 0.00 0.00 0.00 0.58 0.00 0.41 0.00 0.22 0.77 0.00 0.14 0.33 0.00 0.50 0.11 0.00 0.27 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.40 0.74 0.35 0.35 0.84 1.35 0.00 0.00 0.35 0.55 0.00 0.23 0.44 0.00 0.00 0.00 0.00 0.91 0.00 0.21 0.00 0.25 0.17 0.21 0.00 0.49 0.18 0.23 0.16 0.23 0.00 K alternative_donor CG14478 chr2R + chr2R_13345226_13349498 chr2R_13345378_13349498 chr2R_13349499_13349990;chr2R_13345201_13345225 100.00 97.06 96.97 100.00 100.00 96.43 97.78 96.61 95.24 100.00 100.00 96.49 100.00 100.00 97.44 98.15 93.10 96.97 97.62 100.00 100.00 95.45 98.41 100.00 95.83 96.77 100.00 96.88 97.22 96.88 100.00 100.00 98.28 98.21 97.37 100.00 100.00 100.00 100.00 97.22 100.00 97.22 96.67 97.73 100.00 100.00 100.00 98.33 98.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG33298 chr2L + chr2L_9515495_9515564 chr2L_9515494_9515495;chr2L_9515564_9515565 chr2L_9515314_9515494;chr2L_9515565_9515744 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 1.43 0.00 0.00 0.00 0.00 NA 2.27 NA NA NA K intron_retention CG5594,CG2812 chr2R + chr2R_19799845_19799906 chr2R_19799844_19799845;chr2R_19799906_19799907 chr2R_19799711_19799844;chr2R_19799907_19799989 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 2.52 0.00 0.00 1.31 0.00 0.52 0.00 2.44 0.55 0.69 0.00 0.00 0.00 0.00 1.83 0.34 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Nos,I_chr2L_10826086_10826539 chr2L - chr2L_10812569_10813300 chr2L_10812884_10813300 chr2L_10813301_10813441;chr2L_10812493_10812568 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Cctgamma chr3R + chr3R_12473409_12473557;chr3R_12473479_12473557;chr3R_12473420_12473557;chr3R_12473424_12473557;chr3R_12473464_12473557 chr3R_12473318_12473557 chr3R_12473558_12473651;chr3R_12473311_12473317 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4558 chrX + chrX_6745086_6745332 chrX_6745085_6745086;chrX_6745332_6745333 chrX_6743806_6745085;chrX_6745333_6745917 10.34 18.52 20.69 29.17 NA 16.67 5.00 4.00 7.50 NA 12.50 7.50 11.76 20.00 14.81 10.00 NA 11.76 15.38 14.04 9.09 11.11 2.86 9.09 6.67 0.00 4.00 16.67 8.33 19.35 15.38 NA 0.00 8.33 0.00 25.00 10.34 8.33 11.90 19.23 10.71 7.41 NA 7.14 13.79 6.25 6.25 14.29 12.90 0.00 10.34 0.00 10.53 6.06 11.11 0.00 6.45 12.00 K alternative_donor I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10065706_10065776;chr2R_10065652_10065776 chr2R_10065709_10065776 chr2R_10065777_10066101;chr2R_10065603_10065651 24.21 20.27 24.00 24.74 24.59 21.31 25.97 26.88 24.17 18.87 21.88 26.61 18.64 24.56 24.10 27.14 21.67 25.93 23.44 22.73 28.07 20.00 22.94 24.73 31.58 18.84 25.77 29.41 23.61 24.21 26.67 15.79 24.56 22.22 18.84 25.00 23.89 18.29 26.72 28.19 22.64 26.36 27.27 23.29 25.37 24.36 25.45 21.26 27.68 25.71 25.23 21.92 20.75 34.04 19.32 28.81 23.40 18.29 K intron_retention m-cup chr3R - chr3R_12973460_12974359 chr3R_12973459_12973460;chr3R_12974359_12974360 chr3R_12973137_12973459;chr3R_12974360_12975127 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 7.14 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 K alternative_acceptor CG9776,CG9772 chr3R - chr3R_162125_162190 chr3R_162131_162190 chr3R_162191_163064;chr3R_161731_162124 98.08 96.15 96.15 96.55 96.30 100.00 95.45 97.30 97.96 100.00 100.00 97.56 96.15 100.00 100.00 100.00 100.00 100.00 100.00 98.41 100.00 97.67 100.00 97.37 100.00 93.33 96.67 94.74 96.88 100.00 100.00 100.00 100.00 97.44 100.00 100.00 96.77 100.00 100.00 98.08 97.14 97.62 100.00 97.06 100.00 97.14 96.67 97.62 100.00 100.00 97.22 100.00 95.83 95.00 100.00 100.00 97.37 93.88 K cassette Lar,I_chr2L_19644636_19644695,REI_chr2L_19702035_19702145 chr2L + chr2L_19717455_19725894 chr2L_19717455_19719702;chr2L_19720000_19725894 chr2L_19719703_19719999 chr2L_19717318_19717454;chr2L_19725895_19726034 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 97.56 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 97.14 96.67 100.00 100.00 100.00 95.45 100.00 94.44 100.00 100.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 96.15 91.67 100.00 100.00 95.83 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 85.71 100.00 K cassette Vha44,I_chr2R_12220926_12223455 chr2R - chr2R_12214666_12216921 chr2R_12214666_12216057;chr2R_12216420_12216921 chr2R_12216058_12216419 chr2R_12214479_12214665;chr2R_12216922_12217419 75.00 NA NA 80.00 NA NA 75.00 NA 100.00 NA NA 100.00 NA NA NA 60.00 NA NA NA 80.00 NA NA NA NA NA NA 75.00 75.00 NA NA NA NA 75.00 100.00 NA NA NA NA 100.00 75.00 NA NA NA 100.00 NA NA NA 75.00 NA 75.00 100.00 NA NA NA NA NA NA 40.00 K cassette CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8174699_8176572;chr2L_8174699_8175994 chr2L_8174699_8175175;chr2L_8175398_8175994,chr2L_8175398_8176572 chr2L_8175176_8175397 chr2L_8174536_8174698;chr2L_8176573_8176806 1.12 0.68 0.60 0.90 0.00 0.00 0.98 0.43 0.82 2.22 0.68 0.71 0.00 0.76 0.00 0.48 1.28 0.00 0.56 1.35 0.70 3.29 1.94 2.08 2.33 0.87 2.01 3.88 2.83 1.81 0.62 0.00 2.29 0.00 0.75 4.83 1.79 1.64 2.69 2.66 2.38 0.67 1.74 2.38 2.04 1.14 1.00 4.00 0.69 1.12 1.09 1.34 1.79 1.82 0.53 0.00 1.75 4.00 K intron_retention RpL15 chr3LHet + chr3LHet_2398091_2398143 chr3LHet_2398090_2398091;chr3LHet_2398143_2398144 chr3LHet_2398050_2398090;chr3LHet_2398144_2398454 100.00 99.74 100.00 99.84 99.87 100.00 99.72 99.94 99.93 100.00 99.86 100.00 99.72 100.00 99.90 100.00 100.00 99.64 100.00 99.96 100.00 100.00 100.00 100.00 100.00 99.86 99.33 100.00 99.69 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.11 100.00 100.00 100.00 100.00 99.85 100.00 99.81 99.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.77 99.91 100.00 100.00 99.91 K jcn_only_AD noncoding_18164,F_chr3R_17192061_17200781,RI_chr3R_17193489_17193631 chr3R + chr3R_17193416_17193631;chr3R_17193489_17193631 chr3R_17193407_17193631 chr3R_17193632_17193731;chr3R_17193389_17193406 14.29 19.05 NA 20.83 NA 14.29 23.08 15.62 16.67 NA NA 18.42 NA 15.00 18.18 11.43 NA NA 16.00 18.75 NA NA 10.00 NA NA 5.00 12.00 9.52 NA NA 16.67 NA NA 16.67 NA NA NA NA 8.70 33.33 5.00 7.50 4.55 16.00 4.17 14.81 NA 8.70 5.26 8.33 14.29 NA NA NA 9.38 3.70 16.00 0.00 K alternative_acceptor CG5360 chr2R + chr2R_19411660_19411871 chr2R_19411660_19411756 chr2R_19411476_19411659;chr2R_19411872_19411935 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 93.33 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 83.33 100.00 100.00 100.00 NA 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 91.67 100.00 100.00 100.00 100.00 NA NA 100.00 88.89 100.00 100.00 K alternative_donor f-cup,RI_chr3R_9522069_9522165,I_chr3R_9524004_9524059,EI_chr3R_9524613_9524789 chr3R - chr3R_9522069_9522163;chr3R_9522069_9522165;chr3R_9522069_9522158 chr3R_9522069_9522160 chr3R_9521969_9522068;chr3R_9522166_9522265 10.00 NA NA 0.00 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor raw,I_chr2L_8712599_8712673,I_chr2L_8735201_8735693 chr2L - chr2L_8735201_8735725 chr2L_8735201_8735721 chr2L_8735101_8735200;chr2L_8735726_8735747 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 88.89 100.00 NA NA NA NA NA NA NA NA 100.00 NA NA 83.33 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA fbp,I_chr2L_19762832_19763529,RI_chr2L_19763745_19764069 chr2L - chr2L_19762832_19764069;chr2L_19763745_19764069 chr2L_19763498_19764069 chr2L_19764070_19764120 57.69 NA 40.00 44.44 NA NA NA 44.44 60.00 82.76 NA 62.96 NA NA NA 48.00 NA NA 0.00 44.44 NA 70.83 NA 61.29 NA NA NA NA NA NA 62.07 NA 50.00 57.69 NA NA 62.96 NA 63.33 74.74 NA 51.72 31.82 76.67 NA 39.29 NA 34.48 43.75 64.00 71.43 NA NA 70.00 50.00 NA 68.18 40.00 K alternative_donor iPLA2-VIA chr3L - chr3L_9856717_9857106;chr3L_9856717_9857292 chr3L_9856717_9856876 chr3L_9856421_9856716;chr3L_9857293_9857459 12.33 6.98 13.33 7.45 12.90 12.82 10.89 10.99 11.93 25.00 13.16 13.54 10.26 10.17 9.09 22.08 10.87 12.28 11.32 11.93 9.80 20.56 11.11 13.79 16.00 17.31 23.53 23.08 26.09 18.75 12.12 23.08 22.97 11.83 10.53 10.34 14.75 12.00 16.95 10.99 15.15 14.44 11.90 12.70 33.33 13.33 10.42 27.27 10.00 13.89 12.33 9.62 9.38 5.00 13.33 8.11 5.13 12.50 K intron_retention unc-13,I_chr4_896337_896921,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_896337_896739 chr4_896336_896337;chr4_896739_896740 chr4_896237_896336;chr4_896740_896865 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K alternative_donor MED10,I_chr3L_16225377_16225479 chr3L + chr3L_16225377_16225479 chr3L_16225424_16225479 chr3L_16225480_16225579;chr3L_16225277_16225376 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 98.70 100.00 100.00 98.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.81 96.97 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 98.57 100.00 100.00 97.37 98.55 97.56 97.78 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 98.48 98.41 K alternative_donor larp,F_chr3R_24151542_24153876,I_chr3R_24160430_24160932,I_chr3R_24160430_24160971,RI_chr3R_24160430_24161527 chr3R - chr3R_24160430_24161729;chr3R_24160430_24160932;chr3R_24160430_24160971;chr3R_24160430_24160975;chr3R_24160430_24160979;chr3R_24160430_24161527 chr3R_24160430_24161939 chr3R_24160330_24160429;chr3R_24161940_24162125 3.12 2.56 6.52 2.07 5.00 4.05 4.58 2.33 2.30 5.56 1.64 2.27 1.32 4.49 6.82 3.31 5.13 2.38 5.43 2.50 2.94 2.97 3.51 4.04 1.75 1.35 3.09 2.56 9.33 1.27 6.25 3.45 4.61 3.12 3.03 1.32 4.21 5.80 3.00 6.20 1.92 3.85 0.00 1.37 6.82 1.67 2.94 4.96 1.27 3.12 3.92 5.33 5.00 0.00 5.77 2.17 2.13 4.12 K alternative_last_exon CG7341,noncoding_13313,CG32195 chr3L + chr3L_18106282_18112890,chr3L_18106282_18112871;chr3L_18106282_18107468 chr3L_18106282_18106718 chr3L_18112891_18114107;chr3L_18107469_18107857 chr3L_18106719_18107164 chr3L_18106149_18106281 0.00 0.00 6.67 4.00 0.00 0.00 4.55 4.35 0.00 0.00 0.00 5.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 6.67 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17490 chr2L + chr2L_22431301_22431358 chr2L_22431300_22431301;chr2L_22431358_22431359 chr2L_22431022_22431300;chr2L_22431359_22431462 73.68 71.88 82.61 84.62 77.78 77.50 72.62 93.85 80.85 66.67 55.56 80.56 76.32 86.05 72.97 91.59 80.56 84.62 78.57 78.08 58.62 69.39 75.00 73.68 86.67 77.78 75.00 68.18 78.12 61.29 36.14 61.54 65.31 81.08 72.73 84.21 74.29 53.33 78.12 64.06 56.25 80.30 74.29 66.67 60.00 52.17 65.71 65.62 85.71 65.52 72.34 65.52 86.36 58.62 79.07 65.62 71.43 63.33 K intron_retention I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499338_1501345 chr3L_1499337_1499338;chr3L_1501345_1501346 chr3L_1499043_1499337;chr3L_1501346_1501397 93.33 83.33 92.31 100.00 NA 93.33 NA 100.00 89.29 NA 91.67 100.00 93.33 94.44 88.89 95.24 100.00 90.00 100.00 88.24 86.67 100.00 85.71 100.00 85.71 NA 94.12 93.75 100.00 92.31 69.57 88.89 72.73 95.45 82.35 NA 95.83 100.00 95.00 96.67 93.33 95.24 90.91 94.12 100.00 81.82 100.00 70.59 88.46 93.33 95.00 93.33 87.50 90.91 93.33 86.67 100.00 94.44 N jcn_only_AA wech,I_chr2R_3373673_3377000,I_chr2R_3373673_3377045,I_chr2R_3373673_3377324,I_chr2R_3376705_3376837 chr2R - chr2R_3373673_3376837;chr2R_3376705_3376837 chr2R_3376324_3376837 chr2R_3376838_3376937 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 13.41 0.00 NA 0.00 NA 0.00 18.64 NA 0.00 0.00 0.00 NA NA NA 15.00 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 K intron_retention Dyb,I_chr2R_8338101_8339173,I_chr2R_8348603_8351844 chr2R + chr2R_8325081_8325151 chr2R_8325080_8325081;chr2R_8325151_8325152 chr2R_8325012_8325080;chr2R_8325152_8325395 82.48 90.00 92.86 79.31 62.50 87.50 80.00 82.61 82.35 NA 90.91 89.47 70.00 85.71 73.33 87.50 92.31 80.00 88.89 80.95 NA NA 76.47 73.33 NA 92.86 88.89 NA NA 70.00 93.33 NA 81.82 90.00 NA NA NA 66.67 63.64 75.00 90.00 84.62 83.33 100.00 NA NA NA NA 74.07 77.78 66.67 83.33 NA NA 70.00 63.64 NA 87.50 K alternative_donor RI_chrX_502548_513324,CG13366,I_chrX_508729_508806,I_chrX_509497_513324,I_chrX_509727_511407,I_chrX_509727_511477,noncoding_21186,I_chrX_509834_511407,CRE_chrX_509851_511307,I_chrX_510004_511307,I_chrX_510004_511407,I_chrX_513176_513324,I_chrX_513519_513631 chrX - chrX_509834_511307;chrX_509834_511413;chrX_509834_511407 chrX_509834_511477 chrX_509751_509833;chrX_511478_511507 0.00 NA NA 0.00 NA 0.00 9.09 9.09 0.00 0.00 NA 11.11 NA NA NA 5.88 0.00 0.00 0.00 7.14 NA 0.00 0.00 12.50 0.00 0.00 0.00 NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA 7.69 0.00 0.00 NA NA NA 0.00 0.00 NA 16.67 NA NA NA 0.00 0.00 NA NA K jcn_only_AA Amph,I_chr2R_8495684_8495920,I_chr2R_8495684_8495960,I_chr2R_8498227_8498492 chr2R + chr2R_8495684_8496733 chr2R_8495684_8496673 chr2R_8495584_8495683;chr2R_8496734_8497141 100.00 100.00 100.00 96.30 100.00 100.00 97.06 100.00 100.00 NA 100.00 97.73 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 100.00 100.00 96.67 K jcn_only_AD l(1)G0196,I_chrX_21900456_21904601 chrX + chrX_21899988_21900142 chrX_21900084_21900142 chrX_21900143_21900455;chrX_21899063_21899987 98.56 98.77 99.12 100.00 99.07 99.10 99.28 99.50 99.62 100.00 100.00 100.00 97.67 100.00 100.00 99.24 98.98 100.00 98.15 97.88 100.00 93.75 98.85 96.30 100.00 97.83 87.23 88.57 93.75 100.00 98.32 96.72 98.99 95.83 97.59 91.30 94.95 95.65 96.91 98.56 93.94 99.14 100.00 97.74 94.44 97.96 96.77 99.36 99.17 97.06 95.18 98.04 97.30 97.50 97.66 100.00 100.00 100.00 K intron_retention CG17233,I_chr3L_20232803_20232962,RI_chr3L_20232898_20232962 chr3L - chr3L_20232711_20232962 chr3L_20232710_20232711;chr3L_20232962_20232963 chr3L_20232703_20232710;chr3L_20232963_20233016 32.29 25.00 NA NA 27.27 NA 50.00 43.75 45.00 NA NA 45.45 NA NA 33.33 NA NA NA NA 60.00 NA NA NA NA NA NA 50.00 60.00 NA 46.15 NA NA NA 22.22 NA NA 28.57 7.14 NA 46.15 NA 20.00 NA NA NA NA NA NA 26.67 NA 31.25 NA NA NA 25.00 7.69 NA NA K jcn_only_AA CG18659,E_chr2R_5011363_5019110,RI_chr2R_5013572_5014531,I_chr2R_5016147_5016997 chr2R - chr2R_5011645_5012248 chr2R_5011651_5012248 chr2R_5012249_5012725;chr2R_5011194_5011644 96.48 96.43 95.52 92.86 95.24 97.01 98.33 100.00 96.27 93.33 95.45 93.65 89.47 87.93 93.42 95.35 100.00 100.00 96.36 96.11 94.92 97.78 92.62 96.83 94.29 97.83 99.21 94.44 96.20 96.04 97.26 97.50 96.48 94.90 98.67 97.44 97.95 97.65 97.90 94.89 94.67 96.77 100.00 100.00 97.14 99.00 99.03 100.00 96.91 95.83 91.92 97.62 93.65 96.46 98.67 97.33 96.30 97.62 K intron_retention REI_chr3L_3042451_3043440,Jafrac2,I_chr3L_3042851_3043044,I_chr3L_3043202_3043271 chr3L + chr3L_3043390_3043440 chr3L_3043389_3043390;chr3L_3043440_3043441 chr3L_3043272_3043389;chr3L_3043441_3043540 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.92 0.00 0.00 0.00 1.87 0.00 0.00 0.00 3.50 4.84 0.00 0.00 0.00 0.00 0.00 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention upd3 chrX + chrX_18174217_18177429 chrX_18174216_18174217;chrX_18177429_18177430 chrX_18174019_18174216;chrX_18177430_18178269 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 4.44 6.45 NA NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA K alternative_acceptor CG13384 chr2L + chr2L_8386386_8386474;chr2L_8386386_8386483 chr2L_8386386_8386486 chr2L_8386217_8386385;chr2L_8386487_8387378 43.51 43.28 41.43 42.90 40.13 41.65 42.56 42.73 39.95 43.51 44.16 42.26 41.43 43.62 45.56 42.28 47.84 42.58 44.22 43.92 40.59 44.99 45.83 44.92 44.42 38.41 46.24 48.35 42.80 45.07 38.12 44.44 44.21 41.01 45.34 46.54 42.79 41.23 42.70 47.36 40.07 43.24 41.64 44.36 45.04 42.75 44.06 43.56 43.80 46.03 41.42 43.54 45.22 44.20 42.11 42.82 46.73 41.96 K intron_retention CG11134,CG11151 chrX + chrX_13632944_13633018 chrX_13632943_13632944;chrX_13633018_13633019 chrX_13632473_13632943;chrX_13633019_13633264 0.00 0.00 0.00 3.03 0.00 0.00 4.55 0.00 1.41 0.00 0.00 1.49 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr2L_10480906_10481097,Grip75 chr2L + chr2L_10483973_10484033 chr2L_10483972_10483973;chr2L_10484033_10484034 chr2L_10483687_10483972;chr2L_10484034_10484193 6.90 0.00 NA 11.76 NA 0.00 15.79 0.00 0.00 NA NA 7.41 NA NA 12.50 0.00 NA NA NA 6.90 NA NA NA NA NA NA 0.00 NA 30.77 NA 27.27 NA 13.33 10.00 NA NA NA NA NA 10.53 NA 6.25 NA 0.00 NA NA NA NA 15.38 12.50 0.00 NA NA NA 0.00 NA 0.00 NA K intron_retention ergic53 chr3L + chr3L_8530117_8530181 chr3L_8530116_8530117;chr3L_8530181_8530182 chr3L_8529991_8530116;chr3L_8530182_8531133 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon CREG,RI_chr3R_13220037_13220257 chr3R - chr3R_13219323_13219537 chr3R_13219477_13219537 chr3R_13216812_13219322 chr3R_13219329_13219476 chr3R_13219538_13219983 75.00 66.67 50.00 85.71 NA 66.67 75.00 66.67 60.00 66.67 NA 75.00 NA 66.67 50.00 40.00 66.67 75.00 60.00 80.00 75.00 100.00 75.00 80.00 NA 66.67 85.71 NA 66.67 NA 80.00 50.00 33.33 80.00 50.00 50.00 NA 75.00 66.67 80.00 100.00 50.00 50.00 NA NA 66.67 100.00 75.00 75.00 85.71 80.00 NA NA 75.00 50.00 75.00 100.00 NA K jcn_only_AA cib,I_chrX_4000307_4003527 chrX + chrX_4004044_4004195 chrX_4004044_4004184 chrX_4003930_4004043;chrX_4004196_4004670 100.00 100.00 100.00 99.62 99.21 100.00 100.00 99.26 100.00 100.00 100.00 99.60 100.00 100.00 100.00 99.55 100.00 100.00 100.00 99.71 100.00 100.00 100.00 100.00 99.21 100.00 99.36 100.00 100.00 100.00 100.00 99.34 100.00 99.57 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.45 100.00 99.67 100.00 100.00 99.64 100.00 99.52 100.00 100.00 100.00 100.00 100.00 99.01 100.00 K jcn_only_AA CG3635 chr2L + chr2L_22183467_22183599;chr2L_22183467_22183607 chr2L_22183467_22183527 chr2L_22183394_22183466;chr2L_22183608_22183915 40.57 33.13 27.81 28.47 25.00 30.84 50.00 32.59 35.22 44.44 34.13 39.89 42.67 46.72 31.43 39.26 33.85 30.22 40.27 40.11 39.44 34.10 28.06 44.81 56.80 40.57 24.87 29.29 52.88 41.57 47.06 56.82 37.41 39.04 41.03 67.46 43.71 38.51 40.30 52.27 58.22 34.17 33.68 51.93 46.58 55.36 48.46 63.42 45.64 33.52 47.89 57.14 41.86 48.41 40.91 40.66 30.63 55.22 K alternative_donor CG31243,CG42457 chr3R + chr3R_13769936_13772915 chr3R_13770009_13772915 chr3R_13772916_13773320;chr3R_13769899_13769935 77.78 NA NA NA NA NA NA NA 55.56 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG3967,RI_chr3L_9408567_9410728,RI_chr3L_9412100_9412179 chr3L - chr3L_9408567_9411443 chr3L_9408567_9410751;chr3L_9410915_9411443 chr3L_9410752_9410914 chr3L_9408508_9408566;chr3L_9411444_9411824 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 97.92 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 98.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD skpA chrX + chrX_550498_551131;chrX_550818_551131;chrX_550638_551131;chrX_550774_551131;chrX_550523_551131;chrX_550654_551131 chrX_550433_551131 chrX_551132_551937;chrX_550426_550432 16.27 23.50 23.03 16.47 21.05 21.58 15.07 20.92 26.30 11.38 16.67 16.27 22.40 26.71 17.83 18.71 29.20 17.49 23.86 15.50 19.42 6.78 13.79 21.10 19.27 21.51 3.03 6.59 1.14 11.64 12.02 12.30 12.36 19.55 17.78 3.25 10.50 15.79 12.44 6.77 6.30 22.97 18.64 11.00 8.15 6.63 15.38 7.03 24.33 16.85 12.81 17.65 9.56 14.16 17.41 12.67 17.68 8.37 K intron_retention Jupiter,I_chr3R_7418347_7445425,RE_chr3R_7419487_7429863,I_chr3R_7429934_7430307,I_chr3R_7429962_7445425,I_chr3R_7430006_7445425,RI_chr3R_7442748_7445425,RI_chr3R_7442793_7445425 chr3R - chr3R_7419489_7429863 chr3R_7419488_7419489;chr3R_7429863_7429864 chr3R_7419355_7419488;chr3R_7429864_7429933 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N multi_cassette boi,I_chrX_2363445_2363896 chrX - chrX_2339627_2344702 chrX_2339627_2340443;chrX_2340611_2340674;chrX_2340858_2340922;chrX_2341631_2344702 chrX_2340444_2340610;chrX_2340675_2340857;chrX_2340923_2341630 chrX_2338205_2339626;chrX_2344703_2344871 100.00 100.00 100.00 69.49 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette unc-5,E_chr2R_11238100_11240757,I_chr2R_11252444_11252570 chr2R + chr2R_11247974_11252017 chr2R_11247974_11249487;chr2R_11249806_11252017 chr2R_11249488_11249805 chr2R_11247920_11247973;chr2R_11252018_11252023 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 93.75 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 97.14 100.00 97.83 100.00 100.00 98.08 97.22 100.00 96.77 98.25 100.00 100.00 100.00 95.65 98.46 100.00 98.08 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4847655_4848149 chrX_4847654_4847655;chrX_4848149_4848150 chrX_4847526_4847654;chrX_4848150_4848168 9.52 6.25 15.38 13.79 9.09 20.83 23.33 9.68 16.36 14.29 13.33 13.79 83.33 19.05 13.04 10.00 3.85 NA 9.52 15.79 10.00 6.67 6.82 7.14 0.00 NA 3.45 8.70 0.00 0.00 14.63 0.00 12.50 17.50 10.53 0.00 2.04 6.67 6.82 9.09 11.11 13.16 NA 6.25 0.00 5.56 10.34 9.68 11.11 6.45 7.32 0.00 NA 0.00 25.00 0.00 11.11 9.09 K jcn_only_AA Pfrx,I_chrX_19390217_19400515,RI_chrX_19390217_19403850,RI_chrX_19392914_19400518,RI_chrX_19399882_19400518,I_chrX_19400112_19400515,RI_chrX_19400112_19400518,I_chrX_19400271_19400518 chrX + chrX_19392914_19400518 chrX_19392914_19400515 chrX_19392814_19392913;chrX_19400519_19400615 48.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 57.14 NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD F_chrX_15764251_15765393,CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15764432_15765393;chrX_15764522_15765393;chrX_15764247_15765393;chrX_15764620_15765393 chrX_15764599_15765393 chrX_15765394_15765493;chrX_15764236_15764246 15.84 NA NA 28.00 NA NA 15.00 16.67 12.50 NA NA NA NA NA NA 9.09 NA NA 20.00 13.04 NA NA NA NA NA NA NA NA NA NA NA NA NA 17.65 NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA 18.42 NA NA NA NA NA NA NA NA NA K cassette CG6643,I_chr3R_20370792_20375406 chr3R + chr3R_20374862_20377050;chr3R_20370792_20377050 chr3R_20370792_20375406,chr3R_20374862_20375406;chr3R_20375487_20377050 chr3R_20375407_20375486 chr3R_20370747_20370791;chr3R_20377051_20377534 86.32 84.62 89.74 94.59 86.32 79.00 87.80 83.64 88.76 51.85 70.51 82.35 70.10 87.72 84.21 86.39 90.48 82.76 88.55 84.57 89.39 86.54 81.13 89.33 79.31 73.68 90.00 86.00 77.78 79.66 82.48 87.88 84.44 89.18 82.28 63.51 89.09 82.69 85.94 80.00 74.29 87.06 89.25 77.53 77.42 84.15 89.71 82.76 89.00 92.00 86.36 87.93 90.00 86.36 87.68 88.46 91.09 90.14 K intron_retention unc-13,RI_chr4_892852_895828,RI_chr4_894198_895828,I_chr4_895008_895828,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_895094_895828 chr4_895093_895094;chr4_895828_895829 chr4_894872_895093;chr4_895829_895928 0.00 NA 0.00 0.00 0.00 0.00 0.00 10.34 2.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 12.50 0.00 NA NA NA 0.00 NA NA 0.00 0.00 10.00 NA NA 0.00 3.70 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 7.69 NA 2.86 0.00 NA NA 0.00 NA 0.00 NA K jcn_only_AD kis,RI_chr2L_231035_231947,RI_chr2L_242745_242800,I_chr2L_242926_250756 chr2L - chr2L_231035_231962 chr2L_231035_231947 chr2L_230935_231034;chr2L_231963_232047 15.86 28.75 9.09 19.23 20.73 15.91 12.88 22.62 17.62 16.33 13.79 12.68 20.00 19.15 19.58 15.86 11.11 20.00 20.00 20.19 12.90 2.07 16.28 8.33 9.62 15.79 12.50 16.88 37.72 12.93 19.42 6.82 19.58 14.29 17.86 5.88 13.04 17.86 17.59 18.75 5.71 17.41 11.70 20.74 13.04 25.86 11.54 11.21 20.57 12.50 17.31 8.33 15.00 4.00 24.82 11.76 6.25 7.29 K intron_retention sar1,I_chr3R_18185148_18185246 chr3R + chr3R_18182467_18183252 chr3R_18182466_18182467;chr3R_18183252_18183253 chr3R_18182460_18182466;chr3R_18183253_18183393 26.32 NA 17.39 39.13 15.79 17.65 25.93 6.67 26.32 NA 23.08 15.62 25.00 7.69 35.29 10.71 NA NA 32.26 25.00 33.33 90.00 38.46 NA NA 13.33 50.00 NA 72.73 NA 31.03 NA NA 17.14 NA NA NA NA NA 42.86 54.55 14.29 NA 47.06 33.33 NA 36.36 30.77 19.35 NA NA NA NA NA 22.73 NA NA 54.55 K alternative_acceptor Flo,I_chr2R_11456012_11456623 chr2R - chr2R_11454673_11454747 chr2R_11454678_11454747 chr2R_11454748_11454816;chr2R_11454609_11454672 100.00 98.70 100.00 100.00 100.00 98.33 100.00 100.00 100.00 97.44 100.00 99.13 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.48 100.00 100.00 100.00 100.00 100.00 98.28 100.00 100.00 100.00 98.61 100.00 99.12 100.00 100.00 100.00 100.00 100.00 99.11 100.00 100.00 99.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9003728_9004854;chrX_9003790_9004854;chrX_9003918_9004854 chrX_9004021_9004854 chrX_9004855_9004862;chrX_9003721_9003727 16.67 9.09 21.43 16.67 NA 11.11 18.52 22.22 16.13 NA 28.57 7.89 23.08 13.64 6.67 12.82 33.33 14.29 18.18 17.86 25.00 14.29 14.29 27.27 37.50 13.64 33.33 NA 22.22 12.50 14.81 25.00 28.57 15.38 14.29 27.27 11.11 16.67 33.33 20.00 20.00 14.81 15.38 22.22 NA 16.67 0.00 20.00 10.34 14.29 13.33 9.09 33.33 NA 11.11 14.29 NA 20.00 K alternative_acceptor CG8449,RI_chr3R_9096143_9096213,RI_chr3R_9096632_9096844 chr3R - chr3R_9096143_9096213 chr3R_9096153_9096213 chr3R_9096214_9096281;chr3R_9096084_9096142 96.67 100.00 93.33 96.00 100.00 92.86 100.00 96.55 95.74 100.00 92.31 96.43 100.00 94.12 100.00 100.00 92.31 93.33 95.00 97.73 95.24 94.74 96.67 96.00 100.00 100.00 97.06 93.33 95.00 90.91 92.86 96.77 95.24 96.00 93.75 88.24 92.59 100.00 97.30 97.56 100.00 97.37 100.00 96.55 95.83 97.62 100.00 97.22 97.22 100.00 96.15 100.00 95.24 100.00 100.00 95.65 100.00 100.00 K intron_retention Slip1,RI_chr4_684967_689045,I_chr4_685717_686576,RI_chr4_685717_689045,RI_chr4_687548_689045 chr4 + chr4_687559_689045 chr4_687558_687559;chr4_689045_689046 chr4_686581_687558;chr4_689046_689145 10.71 7.14 16.67 38.89 23.08 13.33 21.74 12.00 16.22 NA 7.41 20.75 29.17 15.15 12.50 18.60 8.33 11.76 7.32 9.64 13.79 11.11 11.43 5.71 11.11 8.33 16.13 27.78 7.69 11.54 10.71 NA 16.67 9.38 16.67 20.00 5.71 0.00 5.88 8.33 NA 10.71 9.52 9.68 NA 9.68 6.67 NA 15.52 14.29 4.65 5.56 0.00 0.00 4.76 8.33 5.13 NA K intron_retention I_chr2L_114992_156735,RI_chr2L_114992_155545,RI_chr2L_114992_155566,I_chr2L_114992_155637,I_chr2L_114992_156175,RI_chr2L_155430_155637,CG11455,CG3436 chr2L + chr2L_155430_155637 chr2L_155429_155430;chr2L_155637_155638 chr2L_155424_155429;chr2L_155638_155645 98.72 98.72 98.36 97.54 97.26 98.28 99.28 98.04 98.73 100.00 98.51 98.18 100.00 98.51 96.10 98.02 100.00 98.67 98.70 98.10 100.00 95.83 98.86 98.08 100.00 100.00 98.78 97.14 97.92 100.00 100.00 98.11 98.08 99.04 100.00 100.00 98.88 98.44 100.00 98.90 98.00 98.37 95.83 96.39 97.14 99.03 96.19 100.00 96.94 100.00 98.85 100.00 100.00 99.07 98.82 100.00 98.25 100.00 K alternative_acceptor RpL27A,E_chr2L_4457411_4457977,I_chr2L_4458058_4458120 chr2L - chr2L_4457290_4457374;chr2L_4457275_4457374 chr2L_4457319_4457374 chr2L_4457375_4457410;chr2L_4457188_4457274 0.55 0.43 0.63 0.60 0.41 0.66 1.12 0.51 0.50 1.19 1.14 0.61 0.66 0.22 0.29 0.56 0.26 0.43 0.48 0.66 0.83 0.50 0.38 0.38 1.11 1.50 0.43 0.69 13.65 0.75 0.59 1.07 0.30 0.57 0.56 2.66 0.55 0.37 0.25 0.48 1.97 0.42 0.44 0.32 0.36 0.88 0.20 1.04 0.57 0.69 0.32 0.53 0.45 0.40 0.55 0.24 0.37 0.81 K jcn_only_AD Bmcp,RI_chr3L_11714462_11715104 chr3L + chr3L_11714211_11714416 chr3L_11714292_11714416 chr3L_11714417_11714461;chr3L_11714027_11714210 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 94.74 97.47 100.00 100.00 100.00 97.75 100.00 100.00 100.00 100.00 98.36 98.46 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 100.00 100.00 100.00 99.02 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention MRP,I_chr2L_12727117_12729243,F_chr2L_12727117_12736035 chr2L + chr2L_12727117_12728020 chr2L_12727116_12727117;chr2L_12728020_12728021 chr2L_12727017_12727116;chr2L_12728021_12728086 5.98 4.88 8.11 18.06 4.44 7.32 7.14 13.08 7.93 0.00 26.32 10.34 10.14 8.06 7.46 7.87 10.77 3.33 7.14 2.97 13.89 10.00 5.06 5.98 3.30 10.53 7.63 11.63 3.70 8.20 7.14 0.00 5.41 6.67 4.76 8.00 4.72 2.41 2.11 4.64 2.53 7.35 5.56 1.24 0.00 3.33 0.00 6.67 8.33 1.92 3.73 6.12 0.00 1.67 9.09 1.72 1.84 1.92 K intron_retention Oatp74D,I_chr3L_17500359_17500724 chr3L + chr3L_17503635_17503698 chr3L_17503634_17503635;chr3L_17503698_17503699 chr3L_17503491_17503634;chr3L_17503699_17503875 5.15 2.34 6.38 7.77 6.25 9.23 9.71 5.15 6.28 0.00 6.06 4.48 5.48 10.00 7.14 6.49 3.45 4.00 14.04 8.38 6.67 7.17 3.49 3.20 1.59 4.69 5.00 8.96 2.27 5.41 6.67 3.77 5.77 7.22 6.25 4.76 4.86 2.50 2.81 5.65 8.82 6.98 5.56 1.41 12.70 2.13 3.21 13.16 8.80 2.54 3.94 4.84 2.47 3.54 2.50 4.13 3.38 2.38 K intron_retention CG1416,I_chr2L_21758100_21758179,I_chr2L_21758143_21758183,I_chr2L_21758143_21758209 chr2L + chr2L_21758143_21758183 chr2L_21758142_21758143;chr2L_21758183_21758184 chr2L_21758116_21758142;chr2L_21758184_21758279 100.00 100.00 100.00 99.46 100.00 99.12 99.54 100.00 99.70 100.00 100.00 100.00 100.00 100.00 100.00 99.69 100.00 100.00 100.00 99.26 100.00 98.88 99.48 99.36 100.00 100.00 99.47 99.42 100.00 100.00 100.00 99.21 100.00 99.52 100.00 100.00 100.00 100.00 100.00 99.47 100.00 99.65 100.00 100.00 100.00 100.00 100.00 99.44 99.67 100.00 100.00 99.25 100.00 100.00 100.00 99.39 99.60 99.59 K alternative_acceptor slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,I_chr2R_20289332_20290093 chr2R - chr2R_20288968_20289185 chr2R_20289009_20289185 chr2R_20289186_20289285;chr2R_20288868_20288967 94.55 100.00 95.83 87.34 96.77 94.59 97.18 96.00 89.08 93.10 97.44 92.21 94.55 100.00 94.12 93.67 91.67 100.00 93.10 97.06 85.71 82.05 96.15 97.22 100.00 90.57 95.45 90.32 91.89 96.77 95.31 100.00 90.00 96.70 94.44 97.06 95.24 97.06 100.00 93.94 95.83 90.53 97.56 91.67 92.31 84.62 95.00 94.12 93.68 93.33 94.44 95.24 87.50 91.67 88.57 96.43 84.00 96.67 K alternative_acceptor cic,RI_chr3R_16122222_16123529 chr3R + chr3R_16122222_16123529;chr3R_16122222_16124105 chr3R_16122222_16122818 chr3R_16122122_16122221;chr3R_16124106_16124254 2.94 1.77 2.06 3.78 1.20 1.20 3.39 3.11 2.68 6.35 2.74 1.83 2.60 2.56 1.50 6.33 2.22 1.59 2.35 2.22 1.01 18.57 4.21 2.34 3.45 6.32 4.85 14.02 12.68 9.00 2.08 6.25 12.20 2.17 3.75 11.72 2.94 3.33 3.72 5.70 9.80 1.83 1.32 7.14 9.76 5.56 1.69 8.86 2.15 1.67 3.03 2.78 2.44 2.90 1.61 3.28 2.27 6.67 K intron_retention shot,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9753001_9753565 chr2R_9753000_9753001;chr2R_9753565_9753566 chr2R_9752056_9753000;chr2R_9753566_9753631 0.76 1.85 0.65 1.37 0.00 0.00 2.01 1.64 1.23 0.98 2.04 0.99 0.00 0.00 0.63 2.75 0.00 0.00 1.35 1.08 0.00 1.63 1.53 1.47 0.76 0.83 0.53 1.55 0.00 0.68 1.66 0.00 0.00 1.91 1.03 1.85 0.00 0.82 0.00 0.53 0.00 0.24 1.43 1.60 0.76 1.77 0.00 1.23 0.67 0.62 0.81 0.00 0.00 0.00 0.51 0.00 0.98 0.00 K intron_retention Ptp61F,RI_chr3L_1345162_1345493 chr3L - chr3L_1342634_1344403 chr3L_1342633_1342634;chr3L_1344403_1344404 chr3L_1342623_1342633;chr3L_1344404_1344529 59.85 55.17 60.27 72.45 71.43 47.69 91.55 63.33 67.86 73.33 87.18 68.48 58.00 58.33 70.59 50.00 73.17 72.73 59.02 67.52 89.74 67.31 66.27 51.19 70.59 71.19 58.95 62.32 57.00 63.22 57.63 41.30 76.92 53.33 55.56 77.78 73.63 64.29 56.84 49.46 69.81 57.03 63.16 65.33 47.46 50.46 48.81 50.69 57.43 45.88 47.73 50.00 59.57 39.29 60.94 48.33 56.63 59.85 K intron_retention Lmpt,CG11915,CG33256,I_chr3L_16904612_16905228,I_chr3L_16904980_16905228 chr3L + chr3L_16890729_16905228 chr3L_16890728_16890729;chr3L_16905228_16905229 chr3L_16890484_16890728;chr3L_16905229_16905328 1.89 0.00 9.09 0.00 0.00 0.00 5.88 0.00 2.60 3.33 NA 6.45 NA 0.00 0.00 0.00 0.00 NA 0.00 2.56 14.29 7.06 3.08 1.89 0.00 NA 1.96 3.85 0.00 7.14 2.94 NA 5.56 4.76 6.67 6.67 2.27 3.92 2.50 0.00 0.00 5.56 NA 2.33 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 NA 0.00 4.55 0.00 0.00 NA K intron_retention dom,I_chr2R_17217595_17218598,snoRNA:Psi18S-1389a,snoRNA:Psi18S-1389b,I_chr2R_17228865_17228924 chr2R + chr2R_17221352_17221878 chr2R_17221351_17221352;chr2R_17221878_17221879 chr2R_17219255_17221351;chr2R_17221879_17222097 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 3.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG5973,I_chr2L_7441485_7443583,I_chr2L_7443388_7443583 chr2L + chr2L_7440963_7443583;chr2L_7440852_7443583;chr2L_7441757_7443583 chr2L_7440959_7443583 chr2L_7443584_7443683;chr2L_7440710_7440851 64.06 65.85 71.74 66.67 61.82 53.85 58.82 63.20 62.76 53.85 70.83 58.18 63.83 50.79 46.05 67.46 68.18 69.23 72.22 61.92 67.27 78.57 62.20 48.39 78.26 60.00 71.93 NA NA 71.43 45.65 76.00 70.37 58.23 80.77 51.02 59.52 NA 74.00 64.29 NA 59.01 62.50 NA 60.00 72.55 71.88 50.00 59.31 62.67 74.29 66.67 57.78 80.95 60.26 76.19 71.15 71.43 K alternative_donor CG11248 chr3L + chr3L_21673324_21673399;chr3L_21673253_21673399 chr3L_21673333_21673399 chr3L_21673400_21675533;chr3L_21673237_21673252 50.00 NA NA NA NA NA NA 42.86 57.14 NA NA 80.00 NA NA NA 50.00 NA NA NA 16.67 NA NA NA NA NA 40.00 28.57 NA NA NA NA NA NA 57.14 NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA K cassette Hrb98DE,RI_chr3R_24429041_24431183 chr3R + chr3R_24429041_24431183;chr3R_24429041_24429782 chr3R_24429041_24429329;chr3R_24429421_24429782,chr3R_24429421_24431183 chr3R_24429330_24429420 chr3R_24428941_24429040;chr3R_24431184_24431283 99.74 99.67 100.00 100.00 100.00 100.00 99.73 99.78 99.84 100.00 100.00 99.78 96.90 99.60 100.00 100.00 99.57 100.00 100.00 99.86 100.00 99.76 99.12 99.73 99.55 99.27 99.72 99.70 91.91 99.84 99.65 99.52 99.50 99.79 99.48 100.00 99.73 99.61 99.48 99.56 98.96 99.85 100.00 99.75 100.00 99.88 98.92 99.50 99.83 100.00 99.78 99.60 99.25 100.00 99.69 99.74 99.72 99.53 K intron_retention Rm62,I_chr3R_1828444_1829394,I_chr3R_1828476_1829394 chr3R - chr3R_1828821_1829394 chr3R_1828820_1828821;chr3R_1829394_1829395 chr3R_1828656_1828820;chr3R_1829395_1829494 49.08 52.63 50.00 50.00 56.25 NA 85.71 68.18 51.22 37.04 64.00 69.57 69.23 56.25 65.00 42.86 66.67 53.85 76.47 57.58 57.14 100.00 44.74 24.32 31.25 NA 39.13 40.00 25.00 38.89 29.63 NA 23.17 66.67 33.33 26.32 53.33 45.00 38.24 50.00 27.59 54.17 45.45 48.15 27.27 58.33 42.86 45.71 50.00 29.41 46.15 52.63 27.59 26.32 73.33 33.33 50.00 33.33 N intron_retention CG16971,CG33229,I_chr3L_225856_225909,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_225543_225725 chr3L_225542_225543;chr3L_225725_225726 chr3L_225537_225542;chr3L_225726_225849 16.29 17.02 26.92 100.00 15.38 25.00 17.54 20.00 10.34 20.00 8.00 17.95 18.18 14.29 9.76 18.52 15.91 10.81 18.87 10.28 14.89 16.35 6.58 18.18 22.22 43.48 100.00 12.28 12.50 10.53 18.18 NA 19.44 19.40 NA 20.45 8.14 13.16 14.29 13.98 NA 21.92 22.86 9.09 NA 6.90 NA 16.22 22.22 NA NA 9.30 NA NA 12.73 NA 10.53 NA K alternative_donor Syx4,I_chrX_2635555_2635621,I_chrX_2636831_2636971 chrX - chrX_2633579_2633742;chrX_2633579_2635455 chrX_2633579_2633652 chrX_2633330_2633578;chrX_2635456_2635529 0.00 0.00 1.59 0.00 0.00 0.00 1.61 1.02 0.93 0.00 0.00 2.25 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG8920 chr2R + chr2R_16213043_16213121 chr2R_16213043_16213100 chr2R_16212894_16213042;chr2R_16213122_16213478 100.00 100.00 96.00 97.14 100.00 100.00 96.67 100.00 97.96 91.67 100.00 100.00 100.00 100.00 95.00 100.00 100.00 94.12 100.00 97.78 92.86 100.00 100.00 96.30 100.00 100.00 100.00 100.00 95.24 92.86 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 96.67 96.43 97.06 100.00 100.00 100.00 96.00 95.65 100.00 100.00 N alternative_donor myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_715043_716708;chr4_715043_716482;chr4_715043_716613;chr4_715043_715839 chr4_715043_716322 chr4_714007_715042;chr4_716709_716712 11.11 11.11 0.00 28.00 25.00 12.50 19.23 41.38 19.51 0.00 0.00 29.17 20.00 27.78 0.00 36.84 16.67 11.11 21.43 31.82 0.00 0.00 30.00 0.00 20.00 0.00 16.67 0.00 0.00 20.00 27.27 NA 0.00 31.03 16.67 0.00 20.00 0.00 0.00 11.11 0.00 19.05 25.00 11.11 NA 0.00 0.00 0.00 25.93 0.00 9.09 22.22 0.00 0.00 20.00 33.33 0.00 0.00 K intron_retention mmd chrX - chrX_15854946_15856018 chrX_15854945_15854946;chrX_15856018_15856019 chrX_15854903_15854945;chrX_15856019_15856024 44.96 NA NA NA NA NA 60.00 25.00 42.86 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 47.06 NA NA NA NA NA NA NA NA NA K alternative_acceptor RpL8,I_chr3L_2587513_2587750,I_chr3L_2587600_2587750,RI_chr3L_2587690_2587750,I_chr3L_2589746_2592161 chr3L + chr3L_2587514_2587717;chr3L_2587514_2587575 chr3L_2587514_2587750 chr3L_2587500_2587513;chr3L_2587751_2587850 99.85 99.88 99.91 99.93 99.97 100.00 99.84 99.88 99.92 99.92 99.97 99.94 99.80 99.90 99.95 99.93 99.94 99.94 99.92 99.93 99.90 99.64 99.76 99.84 99.91 99.89 99.79 99.81 99.78 99.85 99.75 99.87 99.77 99.85 99.64 99.60 99.85 99.83 99.87 99.91 99.64 99.88 99.82 99.74 99.86 99.76 99.76 99.85 99.81 99.77 99.43 99.81 99.80 99.28 99.91 99.85 99.85 99.80 K jcn_only_AD kuk chr3R + chr3R_12906028_12908385 chr3R_12906079_12908385 chr3R_12908386_12908865;chr3R_12905959_12906027 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.17 98.44 97.30 99.13 98.41 100.00 100.00 99.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.92 100.00 100.00 100.00 100.00 100.00 99.11 100.00 100.00 99.04 99.09 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 98.29 100.00 98.84 100.00 98.61 100.00 100.00 100.00 100.00 100.00 K intron_retention ifc,I_chr2L_5986893_5987347,RI_chr2L_5987175_5987347,noncoding_1271 chr2L + chr2L_5986893_5987615 chr2L_5986892_5986893;chr2L_5987615_5987616 chr2L_5986793_5986892;chr2L_5987616_5987779 3.43 3.43 2.88 4.69 3.45 2.63 2.95 2.65 2.92 4.49 1.08 2.96 1.61 3.07 3.91 5.64 3.85 7.00 3.32 4.24 3.77 4.50 4.46 4.89 3.42 1.77 4.82 6.74 3.51 3.91 3.37 1.04 3.50 4.12 3.59 3.79 4.07 2.90 4.10 3.42 2.90 2.86 2.37 4.14 1.52 2.70 1.05 6.00 4.26 3.60 2.79 5.81 2.15 0.73 3.91 2.86 1.46 1.16 K intron_retention unc-13,I_chr4_897077_897142,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_897081_897142 chr4_897080_897081;chr4_897142_897143 chr4_896922_897080;chr4_897143_897242 2.41 0.00 0.00 7.50 0.00 0.00 7.69 9.62 5.97 NA 0.00 6.90 0.00 0.00 8.70 5.26 12.00 0.00 6.06 0.00 NA 13.25 6.67 0.00 13.79 2.94 3.85 NA 20.00 0.00 2.38 NA 5.71 2.44 0.00 16.67 8.33 NA 0.00 0.00 NA 7.84 0.00 0.00 NA 0.00 NA 0.00 2.38 NA 2.94 7.14 NA NA 0.00 NA 0.00 NA K intron_retention eIF2B-beta,RI_chrX_2598807_2598852 chrX + chrX_2598807_2598869 chrX_2598806_2598807;chrX_2598869_2598870 chrX_2598707_2598806;chrX_2598870_2598952 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor l(2)k01209,I_chr2R_13308079_13310771,I_chr2R_13309452_13310771,RI_chr2R_13310877_13311160 chr2R + chr2R_13309417_13311160;chr2R_13309452_13311160;chr2R_13308079_13311160 chr2R_13308486_13311160 chr2R_13311161_13311260;chr2R_13307979_13308078 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor G-salpha60A chr2R + chr2R_19830349_19831752;chr2R_19830125_19831752 chr2R_19830338_19831752 chr2R_19831753_19832263;chr2R_19830091_19830124 6.82 16.67 3.70 5.08 7.41 16.67 5.17 4.65 2.27 NA 9.52 6.25 4.35 2.78 5.26 2.00 5.00 11.76 5.41 2.63 7.41 23.08 0.00 3.85 7.69 12.00 18.75 0.00 26.32 NA 6.67 NA 30.00 6.82 NA 25.00 3.17 11.76 8.00 22.73 NA 4.92 4.55 8.33 15.38 14.29 4.35 NA 7.27 0.00 11.11 7.41 7.69 NA 5.71 9.09 0.00 NA K alternative_last_exon dlg1,I_chrX_11298230_11299306 chrX + chrX_11294866_11299306 chrX_11294866_11296739 chrX_11299307_11299456 chrX_11296740_11296894 chrX_11294821_11294865 0.00 0.00 1.43 1.29 0.00 0.00 0.00 1.16 0.99 0.00 0.00 1.03 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.87 0.00 0.00 0.00 0.00 1.47 1.59 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 1.14 4.00 0.00 0.00 0.00 0.00 1.09 0.00 4.76 0.00 K jcn_only_AD RpLP0 chr3L + chr3L_22069237_22069347 chr3L_22069287_22069347 chr3L_22069348_22069440;chr3L_22069220_22069236 0.20 0.19 0.07 0.06 0.20 0.17 0.14 0.08 0.13 0.19 0.09 0.24 0.04 0.04 0.08 0.12 0.19 0.07 0.03 0.05 0.16 0.60 0.28 0.82 0.36 0.07 0.52 1.03 0.20 0.26 0.41 0.89 0.00 0.02 0.38 0.33 0.48 0.39 0.12 0.48 0.27 0.09 0.18 0.64 0.51 0.00 0.38 0.00 0.24 0.17 0.51 0.83 0.10 0.32 0.21 0.49 0.22 0.35 K jcn_only_AA CG4068 chrX - chrX_4822163_4822249 chrX_4822166_4822249 chrX_4822250_4823341;chrX_4821232_4822162 91.20 88.76 91.49 89.66 90.59 89.47 93.58 91.09 91.75 90.18 92.86 91.76 92.90 89.62 92.83 90.40 90.91 87.72 88.95 91.20 90.61 93.52 94.40 92.99 94.57 89.66 91.98 93.33 91.49 91.37 92.36 91.89 94.34 87.80 92.66 90.91 92.55 90.27 92.04 89.22 88.46 90.09 91.03 89.85 90.00 92.73 93.18 93.10 88.89 95.08 87.22 92.38 88.71 83.78 88.02 89.47 96.00 92.68 N intron_retention CG2076 chrX + chrX_10985226_10985757 chrX_10985225_10985226;chrX_10985757_10985758 chrX_10985084_10985225;chrX_10985758_10985890 21.21 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.15 NA NA NA NA NA NA 27.27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette Rm62 chr3R - chr3R_1830849_1833758 chr3R_1830849_1831671;chr3R_1831825_1833758 chr3R_1831672_1831824 chr3R_1829739_1830848;chr3R_1833759_1834028 0.47 0.41 1.05 0.17 0.42 0.29 0.25 0.18 0.50 0.58 0.36 0.36 0.42 0.29 0.44 0.45 0.74 0.56 0.52 0.35 0.33 12.00 0.62 0.61 0.77 0.24 0.73 0.34 0.57 0.43 0.27 0.26 0.25 0.51 0.81 1.05 0.87 0.15 0.53 0.47 0.47 0.65 0.30 1.04 0.21 0.36 0.61 0.68 0.61 0.68 0.56 0.46 0.56 0.78 0.66 0.66 0.29 0.18 K jcn_only_AD Taf6 chr3L + chr3L_19594248_19594309 chr3L_19594250_19594309 chr3L_19594310_19594484;chr3L_19594013_19594247 19.44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.79 NA 18.18 NA NA NA 25.00 NA NA NA NA NA NA NA K alternative_donor CG4589,I_chr2R_20402394_20402462,I_chr2R_20402394_20402706 chr2R - chr2R_20402394_20402809;chr2R_20402394_20402785 chr2R_20402394_20402753 chr2R_20402294_20402393;chr2R_20402810_20402813 92.31 NA 90.00 88.89 NA 100.00 91.67 100.00 92.31 NA 100.00 100.00 100.00 100.00 87.50 92.86 80.00 80.00 88.89 92.31 100.00 NA NA NA NA 100.00 NA NA 80.00 NA 100.00 NA 85.71 100.00 NA NA NA NA NA 80.00 NA 91.67 85.71 NA 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA 85.71 NA NA 83.33 K alternative_acceptor fax chr3L - chr3L_16398937_16400120 chr3L_16398946_16400120 chr3L_16400121_16400459;chr3L_16398602_16398936 78.45 82.93 75.61 83.93 72.34 75.61 37.93 76.09 79.38 72.73 77.42 86.25 77.27 84.62 75.47 74.42 70.27 75.68 82.50 84.38 70.00 78.45 72.50 80.15 87.21 78.79 78.26 88.51 77.27 79.78 80.43 75.00 81.82 75.38 80.85 90.36 79.19 78.26 80.77 76.72 83.67 78.16 77.50 80.65 81.25 81.58 73.08 88.57 73.44 78.42 83.67 82.76 69.35 85.14 84.75 81.69 72.22 76.92 K cassette CG4449,RI_chr3R_19076263_19076888 chr3R - chr3R_19076263_19076888;chr3R_19076260_19076888 chr3R_19076263_19076321,chr3R_19076260_19076321;chr3R_19076825_19076888 chr3R_19076322_19076824 chr3R_19076163_19076259;chr3R_19076889_19076982 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 94.44 95.24 96.67 100.00 100.00 100.00 100.00 100.00 100.00 97.14 96.77 100.00 100.00 100.00 94.12 88.00 95.65 93.75 95.00 100.00 96.88 95.24 86.96 96.77 100.00 96.00 95.00 95.83 97.50 100.00 100.00 95.00 96.30 100.00 96.67 97.67 100.00 100.00 100.00 93.75 94.74 100.00 100.00 100.00 100.00 K intron_retention CG1902,CG30000,I_chr2R_5495525_5495581 chr2R + chr2R_5491271_5491351 chr2R_5491270_5491271;chr2R_5491351_5491352 chr2R_5491228_5491270;chr2R_5491352_5491685 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.36 98.99 100.00 98.31 100.00 96.30 97.06 100.00 100.00 100.00 97.50 97.22 100.00 100.00 98.70 98.39 96.88 100.00 100.00 98.36 93.10 97.96 98.39 100.00 100.00 100.00 98.18 100.00 100.00 98.57 97.73 98.21 100.00 100.00 98.72 100.00 100.00 100.00 98.28 100.00 97.44 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K mutually_exclusive CG17838 chr3R + chr3R_16618278_16620860,chr3R_16620997_16622865 chr3R_16618278_16619437,chr3R_16619574_16622865 chr3R_16620861_16620996 chr3R_16619438_16619573 chr3R_16618036_16618277;chr3R_16622866_16622999 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 77.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 K alternative_donor None chrU - chrU_4029374_4029489;chrU_4029374_4029436 chrU_4029374_4029432 0.75 0.00 1.09 0.65 0.89 1.15 0.00 0.57 0.74 0.79 0.00 0.58 0.00 1.39 0.91 0.00 0.00 0.00 1.08 0.94 1.27 2.48 0.48 0.78 0.00 0.00 0.00 0.00 2.97 0.78 1.06 0.75 1.11 0.68 0.00 0.00 0.47 1.57 1.39 1.52 0.86 0.45 0.00 0.75 0.77 1.82 1.27 1.51 0.55 0.00 0.00 1.09 0.97 1.61 0.00 0.00 0.93 0.51 K intron_retention alpha-Cat,I_chr3L_23319861_23321813,I_chr3L_23327841_23328002 chr3L - chr3L_23312575_23318741 chr3L_23312574_23312575;chr3L_23318741_23318742 chr3L_23312334_23312574;chr3L_23318742_23318923 0.00 0.00 0.00 0.00 0.00 0.00 2.15 2.06 1.06 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpS13,RI_chr2L_8364126_8364208,I_chr2L_8364128_8364191 chr2L - chr2L_8364126_8364187 chr2L_8364125_8364126;chr2L_8364187_8364188 chr2L_8364028_8364125;chr2L_8364188_8364315 0.07 0.06 0.05 0.04 0.02 0.05 0.05 0.03 0.07 0.14 0.05 0.08 0.07 0.02 0.08 0.06 0.05 0.04 0.02 0.06 0.05 0.07 0.07 0.06 0.05 0.05 0.25 0.37 0.18 0.12 0.08 0.06 0.07 0.06 0.11 0.13 0.13 0.13 0.07 0.07 0.12 0.06 0.04 0.09 0.11 0.11 0.10 0.05 0.13 0.19 0.10 0.11 0.13 0.08 0.03 0.15 0.11 0.06 K alternative_donor Btk29A,I_chr2L_8262681_8277370,I_chr2L_8298341_8298782,I_chr2L_8298341_8300884 chr2L - chr2L_8298341_8300817;chr2L_8298341_8300714 chr2L_8298341_8300505 chr2L_8298241_8298340;chr2L_8300818_8301040 80.00 88.24 85.71 75.68 93.33 76.47 74.29 68.57 79.07 81.25 63.64 77.14 70.83 80.00 64.00 66.67 75.00 86.21 80.95 86.00 77.78 90.91 82.50 78.79 82.61 79.17 82.86 68.18 83.33 81.58 86.96 80.00 91.11 81.82 85.00 87.80 83.33 76.00 76.32 80.85 80.77 69.77 80.00 82.05 94.44 84.00 73.68 83.10 71.43 76.00 74.29 56.25 85.71 56.25 64.71 78.95 63.16 85.71 K intron_retention CG8111 chr3L - chr3L_7907752_7907807 chr3L_7907751_7907752;chr3L_7907807_7907808 chr3L_7907161_7907751;chr3L_7907808_7908195 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Msp-300,I_chr2L_5154189_5154247,I_chr2L_5197634_5197866 chr2L + chr2L_5140922_5141652 chr2L_5140922_5141310;chr2L_5141518_5141652 chr2L_5141311_5141517 chr2L_5140913_5140921;chr2L_5141653_5141871 38.63 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 27.27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA I_chr3L_212783_212843,Kaz1-ORFB,Kaz1-ORFA_Kaz1-ORFB,CG13877 chr3L + chr3L_218196_218282 chr3L_218196_218279 chr3L_218127_218195;chr3L_218283_218658 72.00 78.57 78.26 NA NA NA 65.79 78.72 61.11 NA NA 80.85 NA 68.57 71.05 78.26 72.22 74.07 64.71 66.67 NA NA 79.17 71.05 NA 76.92 70.37 NA NA 70.00 67.74 85.71 NA 71.79 72.73 NA NA NA 68.18 62.86 65.00 74.47 82.14 NA NA 62.50 89.36 NA 61.90 78.38 76.47 NA NA 82.05 70.37 70.97 81.25 NA K intron_retention CG31716,I_chr2L_10397648_10398034 chr2L + chr2L_10402563_10402630 chr2L_10402562_10402563;chr2L_10402630_10402631 chr2L_10402407_10402562;chr2L_10402631_10402885 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 1.30 3.03 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention plexA,I_chr4_1035153_1035403,I_chr4_1035473_1035591,RI_chr4_1036247_1047588,RI_chr4_1040642_1047395,RF_chr4_1044307_1047399 chr4 - chr4_1035355_1035403 chr4_1035354_1035355;chr4_1035403_1035404 chr4_1035209_1035354;chr4_1035404_1035471 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 13.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD None chrU + chrU_1352865_1369155 chrU_1362784_1369155 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD cul-2,I_chr2L_21659273_21659705,I_chr2L_21659761_21659839,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21659273_21659839 chr2L_21659761_21659839 chr2L_21659840_21659939;chr2L_21659173_21659272 0.69 0.87 1.03 3.03 1.27 2.08 0.39 0.78 0.48 0.00 1.22 0.48 6.90 0.00 0.00 0.90 0.00 1.22 0.00 0.49 0.00 0.34 1.23 0.00 0.00 0.00 1.47 1.03 0.96 0.80 0.00 2.04 0.00 0.66 0.00 0.69 0.00 0.00 2.89 1.33 1.04 0.52 0.00 0.58 1.96 1.19 1.09 0.00 0.56 0.00 1.06 0.85 1.64 1.33 0.00 2.83 0.00 2.78 K jcn_only_AD I_chr3R_22696095_22697413,Rb97D chr3R - chr3R_22699721_22699792 chr3R_22699721_22699788 chr3R_22699582_22699720;chr3R_22699793_22700512 63.39 70.21 48.84 57.41 59.38 54.84 50.98 60.94 56.25 59.18 NA 59.42 72.41 65.00 65.38 65.38 NA 52.63 74.29 58.89 55.56 65.31 66.67 52.73 58.14 55.56 63.83 82.86 73.33 68.18 62.96 56.52 65.31 45.28 62.07 65.12 64.08 75.71 65.79 60.81 NA 59.49 52.38 75.47 69.39 65.91 50.91 66.67 56.52 72.88 67.21 72.22 61.76 72.88 57.14 68.00 75.00 53.33 K jcn_only_AD TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748984_19749899;chr2R_19748984_19749783 chr2R_19748984_19750012 chr2R_19748884_19748983;chr2R_19750013_19750013 30.52 NA NA 34.62 NA 20.83 16.13 38.89 25.00 NA NA 36.36 NA NA NA 28.00 NA NA NA 34.48 35.00 NA NA NA NA NA NA NA NA NA 57.58 NA NA 31.03 NA NA NA NA NA 30.00 NA 29.73 NA NA NA NA NA NA 29.63 NA NA NA NA NA 22.22 NA NA 35.00 K jcn_only_AD lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3955872_3957375;chr2R_3955586_3957375;chr2R_3955517_3957375 chr2R_3955788_3957375 chr2R_3957376_3957784;chr2R_3955509_3955516 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 NA NA NA 0.00 NA NA 0.00 0.00 1.05 4.17 0.00 0.00 0.00 NA 0.00 NA NA 1.49 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 NA NA 0.00 K cassette CG32549,RI_chrX_18301919_18303082,I_chrX_18302976_18303916 chrX - chrX_18301919_18303082;chrX_18301919_18303916 chrX_18301919_18302550;chrX_18302893_18303082,chrX_18302893_18303916 chrX_18302551_18302892 chrX_18301857_18301918;chrX_18303917_18304016 100.00 NA NA NA NA NA 80.00 100.00 100.00 NA NA 83.33 NA NA NA NA NA NA NA 62.50 NA 100.00 100.00 100.00 100.00 NA 80.00 NA NA NA NA NA NA 100.00 NA NA NA NA 80.00 85.71 NA 75.00 NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA 100.00 100.00 K alternative_donor Spp,Ets21C,rempA chr2L - chr2L_543350_543426 chr2L_543350_543415 chr2L_543282_543349;chr2L_543427_543492 100.00 100.00 100.00 98.91 97.96 100.00 98.46 98.48 100.00 100.00 98.41 100.00 100.00 100.00 98.44 100.00 100.00 100.00 100.00 100.00 98.33 98.90 100.00 100.00 100.00 100.00 99.05 100.00 98.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.12 99.24 98.57 100.00 100.00 100.00 100.00 98.15 98.77 100.00 94.44 98.06 99.24 100.00 100.00 100.00 99.13 100.00 100.00 99.37 97.22 K intron_retention kis,RI_chr2L_231035_231947,RI_chr2L_242745_242800,I_chr2L_242926_250756 chr2L - chr2L_215677_215772 chr2L_215676_215677;chr2L_215772_215773 chr2L_215034_215676;chr2L_215773_216007 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Rtc1,I_chrX_13652113_13652182,I_chrX_13653840_13653902 chrX + chrX_13652113_13652182 chrX_13652117_13652182 chrX_13652183_13652247;chrX_13652053_13652112 100.00 100.00 100.00 100.00 100.00 100.00 98.97 98.92 98.60 100.00 97.67 99.27 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 95.24 100.00 98.17 100.00 100.00 100.00 99.17 100.00 100.00 97.89 100.00 99.10 99.31 97.59 98.36 100.00 100.00 100.00 100.00 98.75 100.00 98.31 100.00 100.00 100.00 100.00 100.00 99.24 97.26 100.00 100.00 100.00 100.00 100.00 98.77 99.17 97.24 98.35 K multi_cassette Su(var)2-HP2 chr2R - chr2R_10499197_10504347 chr2R_10499197_10499285;chr2R_10503906_10504014;chr2R_10504267_10504347 chr2R_10499286_10503905;chr2R_10504015_10504266 chr2R_10499125_10499196;chr2R_10504348_10504372 88.00 89.47 92.31 90.70 86.67 95.45 92.59 92.73 98.39 91.67 93.75 85.71 90.00 81.25 83.33 92.73 96.15 90.91 96.88 84.21 94.74 89.29 83.33 83.33 80.95 96.00 85.71 80.00 84.00 87.50 90.32 53.33 75.68 89.29 84.00 80.00 88.00 90.00 75.00 86.49 91.67 88.89 86.21 88.89 85.71 92.86 66.67 88.10 92.45 78.57 87.88 92.86 85.71 83.33 87.50 88.89 80.00 71.43 K intron_retention CG4699 chr3R + chr3R_11624127_11624442 chr3R_11624126_11624127;chr3R_11624442_11624443 chr3R_11623809_11624126;chr3R_11624443_11624758 77.14 70.73 73.81 66.67 62.16 70.59 88.00 81.54 78.48 73.08 77.50 80.00 88.89 76.32 78.95 69.23 82.50 70.97 78.57 74.26 82.86 90.08 69.23 73.44 72.50 83.33 77.97 70.59 73.68 82.65 77.78 72.31 80.20 73.91 81.25 66.04 67.95 67.39 65.91 96.77 82.09 79.79 89.19 70.77 77.01 82.35 78.79 74.68 80.85 70.91 82.46 79.41 70.83 77.14 78.26 63.04 72.22 77.78 K alternative_acceptor pyd,I_chr3R_4689473_4690507,I_chr3R_4749124_4756437 chr3R - chr3R_4668562_4690507 chr3R_4689473_4690507 chr3R_4690508_4690607;chr3R_4668392_4668561 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA K intron_retention cbs,I_chr2R_9340506_9340593,I_chr2R_9340512_9340593 chr2R + chr2R_9340536_9340593 chr2R_9340535_9340536;chr2R_9340593_9340594 chr2R_9340296_9340535;chr2R_9340594_9340693 0.00 0.00 3.12 0.00 0.00 0.00 2.35 0.00 1.15 0.00 0.00 1.69 0.00 5.13 2.70 0.00 0.00 0.00 0.00 0.00 4.00 NA 3.92 0.00 0.00 0.00 12.50 0.00 0.00 0.00 3.28 0.00 0.00 3.28 0.00 0.00 0.00 3.12 0.00 0.00 4.17 4.05 0.00 0.00 2.78 3.28 2.70 0.00 1.72 0.00 0.00 0.00 NA 0.00 1.89 0.00 0.00 0.00 K intron_retention CG6701,RI_chr2R_9866896_9867532 chr2R - chr2R_9865086_9865149 chr2R_9865085_9865086;chr2R_9865149_9865150 chr2R_9864881_9865085;chr2R_9865150_9865334 0.92 2.60 1.18 6.34 0.00 1.54 2.70 1.96 3.35 0.00 2.35 4.08 2.30 3.30 4.35 4.14 3.12 0.00 1.90 1.16 0.00 0.00 0.92 0.00 0.00 2.90 7.14 10.17 2.13 0.00 0.00 0.00 0.00 1.35 0.00 3.39 1.75 0.00 0.00 0.00 0.00 2.94 1.32 0.83 0.00 0.00 0.00 0.00 1.47 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 3.33 K jcn_only_AD CG18812,I_chr2R_3617214_3617883,I_chr2R_3617214_3622585 chr2R - chr2R_3617214_3622881 chr2R_3617214_3617883 chr2R_3617147_3617213;chr2R_3622882_3623125 0.00 1.23 0.00 0.00 0.00 1.54 0.00 1.27 0.50 0.00 2.27 1.82 0.00 0.00 1.20 0.00 0.00 1.45 0.00 2.94 2.13 3.92 0.00 2.06 0.00 1.98 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 1.09 0.00 0.00 2.00 K intron_retention rl,I_chr2RHet_199154_201722,I_chr2RHet_199154_207044,RI_chr2RHet_203476_203577,RI_chr2RHet_203592_207044,I_chr2RHet_232696_247338,RI_chr2RHet_240197_247338 chr2RHet + chr2RHet_198760_198964 chr2RHet_198759_198760;chr2RHet_198964_198965 chr2RHet_198753_198759;chr2RHet_198965_199153 85.96 81.82 100.00 80.56 NA NA 90.70 76.32 85.71 NA NA 84.62 90.00 78.57 NA 86.21 NA NA 72.22 84.21 NA NA 100.00 NA NA 88.89 100.00 NA NA NA 81.82 NA NA 85.71 NA 100.00 NA NA NA 90.00 NA 84.62 NA 100.00 NA NA NA NA 75.86 NA 100.00 88.89 NA NA 72.73 NA 100.00 NA K jcn_only_AA Pld,RI_chr2R_2138358_2141112 chr2R + chr2R_2138358_2138634 chr2R_2138358_2138580 chr2R_2138258_2138357;chr2R_2138635_2139357 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 97.06 NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA K jcn_only_AD Ucp4A chrX + chrX_17739432_17739522;chrX_17739458_17739522;chrX_17739394_17739522 chrX_17739454_17739522 chrX_17739523_17739558;chrX_17739094_17739393 83.33 80.56 72.41 NA NA NA 90.00 65.22 86.67 NA NA 83.33 NA NA 73.08 52.38 NA 71.43 76.19 90.91 NA NA 89.86 81.40 69.23 NA 86.11 77.78 NA 84.00 62.50 90.32 84.62 86.11 80.85 62.79 81.58 75.00 87.50 84.31 92.00 79.55 90.48 96.15 87.10 88.37 85.71 79.49 83.33 75.86 84.48 78.26 88.89 86.49 80.65 77.08 86.49 NA K alternative_acceptor CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3018018_3018163;chr2L_3018082_3018163;chr2L_3018038_3018163 chr2L_3018025_3018163 chr2L_3018164_3018185;chr2L_3017982_3018017 5.00 5.56 8.00 2.94 12.50 11.11 2.70 1.92 3.03 0.00 7.69 2.27 5.00 3.70 5.88 0.00 4.55 4.35 3.33 4.17 5.88 0.00 5.26 6.67 11.11 0.00 4.00 14.29 0.00 8.33 2.44 14.29 0.00 10.26 5.56 0.00 7.69 12.50 14.29 6.67 0.00 2.94 5.26 4.00 0.00 4.35 0.00 8.33 6.25 7.14 13.04 0.00 0.00 9.09 3.70 16.67 13.33 14.29 K intron_retention pan chr4 + chr4_128999_129066 chr4_128998_128999;chr4_129066_129067 chr4_128029_128998;chr4_129067_129408 100.00 100.00 100.00 97.56 100.00 100.00 97.06 100.00 98.28 87.50 91.67 100.00 100.00 95.00 100.00 97.67 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 95.83 NA 100.00 100.00 100.00 81.82 100.00 100.00 90.91 95.24 NA 100.00 100.00 94.44 NA 100.00 NA 100.00 98.08 NA 100.00 100.00 NA NA 95.83 NA 100.00 88.89 K jcn_only_AD Eip71CD chr3L + chr3L_15505454_15505575 chr3L_15505466_15505575 chr3L_15505576_15505836;chr3L_15505274_15505453 70.00 65.38 71.93 76.71 79.41 88.00 67.50 72.73 61.29 67.86 83.33 59.32 NA 72.41 82.98 69.49 84.38 70.00 66.67 64.21 79.49 54.05 73.91 56.92 63.04 58.62 66.67 81.48 67.86 75.00 76.74 64.71 59.26 73.68 73.08 69.39 65.17 71.83 61.90 70.53 70.27 60.00 71.43 67.33 70.00 72.22 70.93 65.91 55.38 81.25 65.43 70.49 65.52 66.67 65.45 74.51 72.97 76.81 K intron_retention kon chr2L - chr2L_18493154_18493499 chr2L_18493153_18493154;chr2L_18493499_18493500 chr2L_18491754_18493153;chr2L_18493500_18494528 0.00 NA 0.00 12.90 5.88 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 5.56 NA NA 0.00 0.00 0.00 NA 9.68 NA NA 0.00 0.00 NA 0.00 4.35 11.76 NA NA 3.70 NA NA 0.00 NA 0.00 8.33 NA 0.00 NA 7.41 NA NA NA 0.00 0.00 NA 8.33 NA NA NA 0.00 NA NA NA K intron_retention CG11448,I_chrX_1288748_1289115,RI_chrX_1289405_1289590 chrX + chrX_1288192_1288256 chrX_1288191_1288192;chrX_1288256_1288257 chrX_1287124_1288191;chrX_1288257_1288747 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 18.18 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818575_7818970 chr3R_7818575_7818853 chr3R_7818507_7818574;chr3R_7818971_7818995 13.46 8.06 11.94 9.40 5.17 12.77 28.30 14.93 10.96 10.71 16.00 17.59 12.50 17.14 13.43 19.39 13.75 7.81 14.29 14.91 14.29 2.11 13.46 11.43 13.64 5.71 16.22 16.22 22.22 12.50 18.03 6.90 12.31 16.04 8.70 22.22 4.44 8.82 4.92 7.69 22.22 10.81 16.07 8.89 6.67 18.87 9.38 15.91 15.50 13.95 16.36 7.32 10.53 17.65 15.07 16.67 12.07 15.00 K intron_retention CG3209,RI_chr2R_19957766_19960227 chr2R + chr2R_19960485_19960550 chr2R_19960484_19960485;chr2R_19960550_19960551 chr2R_19960228_19960484;chr2R_19960551_19960985 0.56 0.00 0.00 2.37 0.56 0.52 0.00 0.00 0.47 0.00 0.97 1.34 1.32 0.00 0.41 0.00 0.00 0.00 0.00 0.26 1.08 1.06 0.00 1.36 0.00 0.93 1.43 3.21 0.88 0.00 0.50 0.61 0.99 0.77 0.00 1.82 0.43 0.00 1.12 0.77 1.24 0.52 0.00 0.60 1.26 0.00 0.00 0.79 0.68 0.63 0.00 0.56 0.00 0.88 0.00 0.65 1.13 1.16 K cassette CG1578,I_chrX_11705375_11705673,I_chrX_11705375_11707320,RI_chrX_11709573_11710335,I_chrX_11710380_11710454 chrX - chrX_11705375_11707320 chrX_11705375_11705684;chrX_11706637_11707320 chrX_11705685_11706636 chrX_11705275_11705374;chrX_11707321_11707420 91.03 84.51 94.44 56.36 93.02 92.16 86.96 85.71 88.89 87.80 84.21 86.46 75.00 91.67 92.73 94.87 78.05 82.98 90.00 83.48 92.11 72.86 91.35 91.86 92.59 90.70 80.00 86.36 88.89 88.89 84.75 97.78 95.70 88.31 90.74 94.37 91.47 91.25 90.18 89.62 83.67 93.07 88.57 94.29 91.03 97.18 93.06 95.79 92.16 87.50 95.06 90.91 92.73 92.45 94.55 93.10 92.00 100.00 K intron_retention CG18766,I_chr3R_23069667_23070256,I_chr3R_23069667_23070318,RI_chr3R_23069667_23070361,I_chr3R_23069667_23070365 chr3R - chr3R_23069667_23070911 chr3R_23069666_23069667;chr3R_23070911_23070912 chr3R_23069567_23069666;chr3R_23070912_23070951 58.54 90.00 46.15 58.06 66.67 41.67 61.54 75.00 58.54 NA 61.54 48.15 41.18 53.85 61.90 67.86 77.78 66.67 82.35 56.52 29.41 NA NA 60.00 NA NA NA NA NA NA 58.33 NA NA 62.50 NA NA NA NA NA 38.10 NA 52.94 50.00 60.00 NA NA NA NA 55.56 NA 66.67 NA NA NA 50.00 NA NA NA K jcn_only_AD RpS18,CG8908,EI_chr2R_16151918_16151997,I_chr2R_16151918_16152036,I_chr2R_16151938_16152065,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151918_16151997;chr2R_16151942_16151997 chr2R_16151938_16151997 chr2R_16151998_16152066;chr2R_16151852_16151917 99.90 99.91 99.86 99.89 99.95 99.87 99.90 99.88 99.92 99.94 99.86 99.88 99.86 99.93 99.93 99.84 99.84 99.89 99.95 99.89 99.84 99.86 99.93 99.90 99.87 99.83 99.93 99.92 99.88 99.94 99.80 99.94 99.91 99.90 99.87 99.88 99.90 99.92 99.92 99.93 99.94 99.92 99.89 99.93 99.98 99.88 99.93 99.90 99.89 99.95 99.92 99.89 99.89 99.94 99.85 99.92 99.97 99.94 K intron_retention CPTI,I_chr2R_6360956_6361439,I_chr2R_6360956_6365128 chr2R - chr2R_6360956_6362759 chr2R_6360955_6360956;chr2R_6362759_6362760 chr2R_6360856_6360955;chr2R_6362760_6362826 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 5.56 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K jcn_only_AA Gpdh chr2L + chr2L_5947333_5948406 chr2L_5947333_5947856 chr2L_5947240_5947332;chr2L_5948407_5948574 100.00 100.00 NA 100.00 NA NA NA 97.14 100.00 NA NA 100.00 NA NA 100.00 90.00 NA 100.00 NA 96.43 NA NA NA NA NA NA NA NA NA NA 100.00 NA 91.67 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA 96.43 NA 96.15 94.12 NA NA NA NA NA NA 95.45 NA 97.37 K intron_retention Sas-4,I_chr3R_2978972_2979025 chr3R + chr3R_2978975_2979025 chr3R_2978974_2978975;chr3R_2979025_2979026 chr3R_2977037_2978974;chr3R_2979026_2979125 5.56 0.00 12.50 12.50 0.00 NA NA 0.00 3.45 NA 0.00 3.33 14.29 NA 0.00 17.39 NA NA NA 10.00 NA NA 5.56 3.03 10.53 7.14 20.00 NA 61.54 NA 12.50 0.00 0.00 19.05 18.75 0.00 10.00 5.56 12.20 5.88 NA 18.52 NA 5.56 12.50 0.00 0.00 15.00 7.41 13.04 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8443558_8455071 chr3L_8443558_8444874;chr3L_8445229_8455071 chr3L_8444875_8445228 chr3L_8443524_8443557;chr3L_8455072_8455186 91.67 93.33 92.59 95.92 93.33 94.12 75.00 97.44 83.72 88.89 75.00 96.30 88.89 91.30 94.44 77.42 93.33 92.86 92.59 97.30 72.22 91.67 96.30 94.74 81.82 80.00 92.31 83.33 76.67 91.67 86.36 83.33 95.24 89.19 90.00 96.43 88.89 93.75 95.65 86.67 87.50 88.64 82.35 89.29 100.00 92.31 90.91 84.44 90.48 83.33 91.67 93.33 91.67 100.00 92.86 100.00 71.43 80.00 K intron_retention I_chr2R_4783150_4783708,Ggamma1,noncoding_5300 chr2R + chr2R_4789292_4789832 chr2R_4789291_4789292;chr2R_4789832_4789833 chr2R_4789223_4789291;chr2R_4789833_4790635 100.00 100.00 98.84 100.00 100.00 100.00 100.00 100.00 99.25 100.00 100.00 100.00 100.00 100.00 98.94 100.00 100.00 100.00 98.84 100.00 100.00 100.00 98.48 100.00 100.00 98.84 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 97.78 98.72 98.88 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 100.00 97.78 98.51 97.22 96.55 100.00 98.81 100.00 100.00 100.00 K intron_retention CG31716,I_chr2L_10397648_10398034 chr2L + chr2L_10399713_10399767 chr2L_10399712_10399713;chr2L_10399767_10399768 chr2L_10399595_10399712;chr2L_10399768_10400679 0.00 0.00 0.00 9.68 0.00 0.00 0.00 2.86 2.13 NA 0.00 4.65 9.38 11.11 0.00 0.00 4.55 0.00 0.00 1.92 0.00 0.00 12.90 8.70 0.00 0.00 22.73 NA 0.00 0.00 0.00 0.00 6.90 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 2.17 0.00 0.00 0.00 0.00 NA 2.38 2.44 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention Rab14,I_chr2L_14357104_14357340 chr2L + chr2L_14357455_14357519 chr2L_14357454_14357455;chr2L_14357519_14357520 chr2L_14357341_14357454;chr2L_14357520_14357700 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG12582 chr3R + chr3R_24495_24551 chr3R_24494_24495;chr3R_24551_24552 chr3R_24113_24494;chr3R_24552_24648 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 K cassette Jhebp29,RI_chr2R_20857941_20857992,RI_chr2R_20857941_20858127 chr2R + chr2R_20857941_20858127 chr2R_20857941_20857994;chr2R_20858072_20858127 chr2R_20857995_20858071 chr2R_20857841_20857940;chr2R_20858128_20858227 92.16 97.30 92.50 97.92 94.87 93.75 87.50 85.71 91.14 95.24 94.29 92.59 87.50 86.67 94.87 90.48 96.30 87.50 87.88 88.06 90.00 66.67 94.00 98.00 88.89 89.74 93.02 96.77 52.94 96.67 91.89 94.29 88.89 92.16 92.59 83.87 98.11 90.24 88.00 89.19 92.16 93.85 96.77 95.65 97.14 90.24 93.88 88.24 89.36 84.21 92.86 100.00 87.50 82.14 86.67 91.84 93.67 95.24 K cassette CG32549,RI_chrX_18301919_18303082,I_chrX_18302976_18303916 chrX - chrX_18301919_18303082;chrX_18301919_18303916 chrX_18301919_18302550;chrX_18302976_18303082,chrX_18302976_18303916 chrX_18302551_18302975 chrX_18301857_18301918;chrX_18303917_18304016 100.00 NA NA NA NA NA 75.00 NA 100.00 NA NA 80.00 NA NA NA NA NA NA NA 50.00 NA 100.00 100.00 NA 100.00 NA 80.00 NA NA NA NA NA NA 100.00 NA NA NA NA 75.00 80.00 NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA 100.00 100.00 K jcn_only_AA CG9086,CEI_chrX_16859981_16861527,I_chrX_16861895_16862053 chrX - chrX_16857754_16861527 chrX_16859981_16861527 chrX_16861528_16861627;chrX_16857742_16857753 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 13.64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette PP2A-B' chr3R + chr3R_13993929_13997250;chr3R_13993590_13997250 chr3R_13993929_13995378,chr3R_13993590_13995378;chr3R_13995821_13997250 chr3R_13995379_13995820 chr3R_13993510_13993589;chr3R_13997251_13997425 99.14 99.02 98.96 99.34 98.65 100.00 100.00 95.00 99.49 100.00 100.00 98.25 98.59 100.00 100.00 99.07 100.00 98.55 100.00 99.64 100.00 97.83 98.24 98.51 99.05 100.00 99.21 98.57 98.41 100.00 98.80 98.95 99.48 99.30 98.95 99.12 99.50 98.50 98.79 99.10 99.07 98.87 98.25 100.00 99.14 99.22 99.24 99.43 99.40 98.95 99.29 100.00 100.00 98.88 98.91 99.15 99.21 99.03 K intron_retention Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045275_16045854 chr3L_16045274_16045275;chr3L_16045854_16045855 chr3L_16045255_16045274;chr3L_16045855_16045954 83.22 NA NA 90.00 NA NA 77.78 100.00 73.33 NA NA 66.67 72.73 NA NA 84.62 NA NA 80.00 81.82 NA 92.31 NA NA NA 80.00 88.89 NA NA NA NA NA 90.00 93.75 NA 63.64 NA NA NA NA NA 81.25 NA NA NA NA NA NA 100.00 NA NA NA NA NA 90.91 NA NA NA K jcn_only_AA Sap47,I_chr3R_11761076_11761674,I_chr3R_11761436_11761674,F_chr3R_11761635_11761698,E_chr3R_11761635_11761703 chr3R + chr3R_11761307_11761674;chr3R_11761307_11761698;chr3R_11761307_11761703 chr3R_11761307_11761561 chr3R_11761299_11761306;chr3R_11761704_11761774 0.00 NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention CG42574,Hus1-like,I_chr3R_636510_637704 chr3R - chr3R_636510_637704 chr3R_636509_636510;chr3R_637704_637705 chr3R_636410_636509;chr3R_637705_637730 64.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 64.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG12163 chr3R - chr3R_1064920_1065213 chr3R_1064919_1064920;chr3R_1065213_1065214 chr3R_1064176_1064919;chr3R_1065214_1065341 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG3689 chr3L + chr3L_9405083_9406302 chr3L_9405083_9405254 chr3L_9404917_9405082;chr3L_9406303_9406402 17.65 17.65 20.22 18.40 12.35 15.19 30.00 20.00 24.69 13.24 21.82 20.62 31.65 20.25 17.02 25.00 21.74 18.29 17.82 21.47 29.79 16.47 28.43 15.27 22.39 20.51 19.67 17.50 16.28 15.25 23.15 10.69 14.38 19.21 16.47 16.00 20.41 18.75 14.17 17.51 13.19 21.25 20.83 27.06 11.03 14.29 15.79 11.42 22.29 16.81 16.67 14.42 20.22 13.33 15.53 16.30 12.73 13.82 K jcn_only_AD CG42507,Trl,I_chr3L_14745733_14745798,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14744876_14746433;chr3L_14744876_14746310 chr3L_14744876_14745798 chr3L_14744367_14744875;chr3L_14746434_14746571 5.08 7.32 11.32 7.46 5.00 8.89 8.11 6.06 8.64 15.56 2.86 4.41 NA 11.76 5.13 24.00 7.14 10.26 17.50 4.92 2.86 8.75 0.93 7.55 2.50 12.20 6.15 3.03 2.17 3.66 13.95 3.77 3.42 5.97 5.00 3.08 2.33 1.49 2.97 0.00 6.38 11.34 11.11 3.17 3.17 1.43 6.90 5.50 4.49 8.16 8.96 10.42 0.00 3.39 3.77 1.69 1.79 5.04 K intron_retention Nup358,I_chr3R_21078958_21079044,CG11857,CG11858,CG11859 chr3R + chr3R_21085155_21085215 chr3R_21085154_21085155;chr3R_21085215_21085216 chr3R_21084792_21085154;chr3R_21085216_21085704 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 K intron_retention Pk61C,CE_chr3L_129889_141769,I_chr3L_132531_133824,I_chr3L_133962_134014 chr3L + chr3L_132531_135457 chr3L_132530_132531;chr3L_135457_135458 chr3L_132462_132530;chr3L_135458_135842 27.78 27.78 18.18 24.14 30.00 41.18 40.00 30.95 28.00 NA 35.71 24.39 60.87 40.00 26.32 35.71 15.38 42.86 33.33 17.14 33.33 NA 32.00 29.41 NA 19.23 47.62 NA 25.00 28.57 36.36 NA 15.00 28.57 NA 22.22 20.69 NA 23.53 18.18 NA 27.78 37.50 20.00 NA NA 25.00 25.00 25.93 NA 35.00 NA NA NA 25.00 NA NA 11.11 K jcn_only_AD E(bx),I_chr3L_246324_246699 chr3L - chr3L_246324_246885;chr3L_246324_246438;chr3L_246324_246408;chr3L_246324_246794;chr3L_246324_246382;chr3L_246324_246427 chr3L_246324_246388 chr3L_246224_246323;chr3L_246886_246901 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.98 2.56 0.00 1.10 0.00 1.82 0.00 0.00 2.50 2.04 0.00 0.82 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 3.85 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 1.41 0.00 NA NA 0.00 NA NA NA K intron_retention Shawn_Tyler,CG14213 chrX + chrX_19533117_19533177 chrX_19533116_19533117;chrX_19533177_19533178 chrX_19532929_19533116;chrX_19533178_19533426 97.62 98.39 96.49 95.54 94.64 100.00 98.90 96.08 96.09 94.59 97.83 95.35 97.56 98.21 97.37 100.00 98.21 97.62 98.55 96.19 98.00 92.45 94.94 97.94 97.78 98.41 98.63 100.00 97.92 97.50 96.30 97.37 98.08 98.94 98.25 97.87 98.31 98.44 94.29 93.10 93.88 96.12 98.15 98.39 93.18 98.70 98.18 97.50 97.41 97.62 98.65 96.08 93.02 97.92 95.00 96.83 97.06 89.47 K intron_retention CG34394,I_chr2L_3365674_3365965 chr2L - chr2L_3362719_3362998 chr2L_3362718_3362719;chr2L_3362998_3362999 chr2L_3362711_3362718;chr2L_3362999_3363195 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 97.06 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG17698 chr3L + chr3L_23739645_23740858;chr3L_23739645_23741523;chr3L_23739645_23741050 chr3L_23739645_23740972 chr3L_23739290_23739644 92.11 87.50 NA 84.21 95.45 95.65 87.01 86.76 96.00 NA NA 88.10 96.88 92.11 NA 92.86 88.00 NA 93.75 90.00 NA NA 100.00 95.65 NA 88.00 86.49 NA NA NA 96.67 NA NA 95.00 NA 80.00 NA 90.48 NA 89.29 NA 86.96 96.15 86.36 NA 95.83 NA NA 93.75 92.00 97.56 87.50 90.48 NA 93.75 96.67 92.86 NA K intron_retention RpS18,CG8908,EI_chr2R_16151918_16151997,I_chr2R_16151918_16152036,I_chr2R_16151938_16152065,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151938_16152036 chr2R_16151937_16151938;chr2R_16152036_16152037 chr2R_16151852_16151937;chr2R_16152037_16152066 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.98 100.00 100.00 99.97 99.97 100.00 100.00 99.96 100.00 100.00 100.00 99.95 99.96 100.00 100.00 100.00 99.92 100.00 100.00 100.00 99.95 99.95 100.00 100.00 100.00 99.98 100.00 99.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.95 100.00 100.00 100.00 100.00 100.00 100.00 99.97 99.98 K intron_retention fliI,dod chrX + chrX_21214679_21214801 chrX_21214678_21214679;chrX_21214801_21214802 chrX_21214528_21214678;chrX_21214802_21216130 0.00 3.08 4.17 0.00 0.00 0.00 2.13 3.70 2.02 1.33 0.00 2.02 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 0.00 3.57 0.00 3.85 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.96 1.10 0.00 1.57 0.00 0.98 0.00 0.95 1.03 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 K alternative_donor simj,I_chr3L_10680263_10680313 chr3L + chr3L_10681881_10682025 chr3L_10681944_10682025 chr3L_10682026_10682480;chr3L_10681791_10681880 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Trf2,I_chrX_8318346_8318408 chrX + chrX_8303398_8304314 chrX_8303398_8304309 chrX_8303319_8303397;chrX_8304315_8304722 88.89 NA NA NA NA NA 81.82 NA 88.89 NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG8455 chr2L + chr2L_8200281_8200350 chr2L_8200280_8200281;chr2L_8200350_8200351 chr2L_8200102_8200280;chr2L_8200351_8200652 96.00 95.00 100.00 96.88 100.00 93.75 90.32 97.37 95.83 100.00 90.48 100.00 93.33 94.12 96.00 93.75 95.00 100.00 100.00 90.70 94.44 75.00 100.00 95.24 94.12 100.00 100.00 84.62 100.00 91.67 100.00 100.00 100.00 97.73 94.44 95.00 89.47 93.75 100.00 96.15 100.00 96.97 100.00 93.75 100.00 100.00 89.66 100.00 91.89 94.44 96.43 86.67 100.00 93.33 96.00 95.00 96.77 95.45 K intron_retention Set2 chrX + chrX_13314565_13314629 chrX_13314564_13314565;chrX_13314629_13314630 chrX_13314402_13314564;chrX_13314630_13315057 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 2.60 0.00 K cassette Adar,RI_chrX_1668256_1669638,RI_chrX_1668256_1669682,I_chrX_1668256_1682696,I_chrX_1674594_1674717 chrX + chrX_1668256_1672644 chrX_1668256_1669731;chrX_1669772_1672644 chrX_1669732_1669771 chrX_1668156_1668255;chrX_1672645_1672732 40.00 40.00 50.00 62.07 38.89 NA 47.06 37.50 33.33 NA NA 45.45 26.67 45.00 46.15 25.93 54.55 21.43 37.50 35.48 NA 35.29 40.00 40.00 40.00 NA 35.71 NA 25.00 41.67 43.75 NA NA 45.00 NA 50.00 66.67 25.00 50.00 33.33 NA 40.00 35.71 21.05 NA 50.00 NA 41.67 39.29 NA 40.00 30.77 NA NA 28.57 NA NA 38.46 K alternative_acceptor I_chrX_17546225_17546531,CG8211 chrX - chrX_17549488_17549815 chrX_17549492_17549815 chrX_17549816_17550846;chrX_17547855_17549487 94.44 94.74 94.44 91.67 91.67 91.67 95.24 100.00 100.00 91.67 90.91 96.15 100.00 92.31 100.00 93.75 100.00 100.00 100.00 87.50 100.00 97.67 96.55 92.00 100.00 94.12 91.30 95.24 95.83 94.44 73.91 92.31 91.67 100.00 83.33 100.00 91.30 85.00 96.15 96.97 90.91 96.30 91.67 96.15 96.30 95.65 87.50 95.45 93.55 93.33 93.10 100.00 93.75 100.00 96.15 93.75 83.33 94.12 K intron_retention CG17352,I_chr3L_8351006_8351949,I_chr3L_8351036_8351655 chr3L - chr3L_8346527_8346578 chr3L_8346526_8346527;chr3L_8346578_8346579 chr3L_8346519_8346526;chr3L_8346579_8347283 36.03 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA 33.33 35.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention AP-1sigma chr3R + chr3R_19784933_19785001 chr3R_19784932_19784933;chr3R_19785001_19785002 chr3R_19784754_19784932;chr3R_19785002_19785110 2.27 2.60 2.13 2.33 3.39 4.30 2.21 4.55 3.03 0.00 0.00 4.91 2.47 6.32 4.49 3.95 5.26 0.00 1.80 2.03 1.54 2.78 6.33 4.08 1.25 1.89 3.30 4.76 0.00 0.00 4.20 0.00 0.00 3.97 0.00 1.72 0.00 1.22 0.00 3.90 1.22 4.14 2.70 1.22 4.60 1.72 0.00 0.00 4.84 0.00 3.67 3.39 0.00 1.82 2.42 2.88 2.27 0.87 K intron_retention CG11876,CG11877 chr3R + chr3R_24939878_24940815 chr3R_24939877_24939878;chr3R_24940815_24940816 chr3R_24939716_24939877;chr3R_24940816_24941227 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.80 0.00 0.89 0.00 0.00 0.00 0.00 1.24 1.83 1.06 0.00 1.02 0.00 0.56 0.64 0.00 0.00 0.43 0.00 0.37 0.46 1.71 0.00 0.00 0.00 0.00 0.48 0.96 1.47 1.04 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG9135,I_chr2L_6050922_6051505 chr2L + chr2L_6050922_6051627 chr2L_6050922_6051616 chr2L_6050822_6050921;chr2L_6051628_6052022 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 98.41 95.24 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 NA 100.00 NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention vlc chr2R + chr2R_1589799_1590371 chr2R_1589798_1589799;chr2R_1590371_1590372 chr2R_1589738_1589798;chr2R_1590372_1590451 19.23 20.00 21.43 23.44 11.76 23.33 19.67 17.95 19.23 22.22 22.58 20.99 16.33 18.18 21.05 22.50 21.43 68.97 25.00 19.42 22.22 22.73 15.38 14.63 24.24 20.51 13.64 28.57 NA 15.38 12.24 29.41 15.62 19.78 7.14 16.22 11.11 12.90 10.87 22.92 18.75 17.33 13.33 17.65 NA 7.41 17.86 26.67 17.89 11.76 16.13 19.35 9.38 9.52 20.75 22.22 14.63 22.73 K jcn_only_AA CG2698,I_chr3R_3828169_3828941,I_chr3R_3828880_3828941,I_chr3R_3829483_3829715,I_chr3R_3830586_3830981 chr3R + chr3R_3829483_3829555;chr3R_3829483_3829709;chr3R_3829483_3829721 chr3R_3829483_3829697 chr3R_3829383_3829482;chr3R_3829722_3829815 41.18 38.24 45.24 42.62 50.00 44.83 51.79 46.30 36.21 NA 62.16 48.61 55.17 32.35 51.02 44.68 40.91 NA 61.90 29.41 54.55 31.03 34.62 27.42 24.49 42.86 52.73 50.00 44.26 38.10 23.88 48.48 9.52 33.33 34.88 38.46 36.36 42.59 41.54 32.43 37.50 45.00 41.18 42.86 26.67 48.53 46.15 38.00 50.79 22.22 33.33 36.36 23.08 33.33 48.15 36.54 28.30 44.12 K alternative_donor Rho1,I_chr2R_11990455_11992537,RI_chr2R_11991687_11992537 chr2R + chr2R_11990362_11991115;chr2R_11990326_11991115;chr2R_11990814_11991115 chr2R_11990398_11991115 chr2R_11991116_11991279;chr2R_11990232_11990325 54.35 49.55 59.35 56.16 59.00 49.15 63.86 66.86 62.02 55.10 55.73 54.35 64.62 42.69 43.33 65.09 49.25 51.00 60.00 62.93 56.07 31.52 54.55 49.47 42.86 52.38 45.38 58.23 47.83 19.61 51.69 56.92 42.55 60.96 65.06 47.37 41.77 45.83 61.90 41.41 49.28 60.90 66.06 42.67 26.00 41.24 63.72 42.86 60.96 47.37 55.05 55.34 47.95 44.64 62.66 62.26 59.65 38.32 K intron_retention Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19553411_19553473 chr2R_19553410_19553411;chr2R_19553473_19553474 chr2R_19552817_19553410;chr2R_19553474_19553558 4.60 5.62 5.71 5.43 6.25 6.12 5.71 3.16 3.60 10.13 12.20 3.68 7.46 3.19 6.31 2.30 2.44 5.68 4.00 4.12 9.09 9.33 3.88 3.70 12.80 14.56 7.10 14.00 7.80 6.56 5.67 11.94 3.30 2.67 2.33 17.37 4.23 3.88 3.09 4.60 20.24 6.01 6.25 3.08 0.88 4.58 3.40 6.45 3.75 2.15 2.90 3.45 3.42 3.09 3.42 5.21 2.65 5.05 K intron_retention AT25722,CG3376 chr2R + chr2R_20151005_20151058 chr2R_20151004_20151005;chr2R_20151058_20151059 chr2R_20149687_20151004;chr2R_20151059_20151267 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Doa,I_chr3R_24715823_24718923,I_chr3R_24747391_24747896 chr3R + chr3R_24746992_24747062 chr3R_24746991_24746992;chr3R_24747062_24747063 chr3R_24746878_24746991;chr3R_24747063_24747080 38.89 40.00 40.00 42.86 33.33 35.71 66.67 40.00 30.23 NA 43.75 50.00 NA 56.25 45.00 32.00 38.89 26.67 36.36 43.33 23.08 36.84 47.62 34.78 50.00 16.67 56.52 46.15 43.75 42.86 33.33 41.67 15.79 39.13 NA 33.33 27.03 NA 36.36 23.81 NA 40.62 NA 43.75 21.43 31.82 46.15 NA 38.89 31.58 45.00 NA NA NA 33.33 30.00 30.00 18.75 K alternative_donor CG5830,I_chr3L_15996923_15996998 chr3L - chr3L_15997175_15997669 chr3L_15997175_15997448 chr3L_15996999_15997174;chr3L_15997670_15997711 100.00 100.00 100.00 97.30 100.00 100.00 94.44 100.00 100.00 100.00 100.00 96.97 95.65 100.00 95.83 97.73 95.00 100.00 96.15 97.83 100.00 95.24 100.00 100.00 100.00 100.00 94.12 100.00 94.44 100.00 100.00 91.67 93.33 100.00 95.00 100.00 100.00 85.71 100.00 96.00 93.75 97.14 100.00 100.00 90.91 100.00 92.31 96.77 97.73 100.00 100.00 100.00 90.00 87.50 96.15 100.00 87.50 96.55 K intron_retention CG1407,RI_chr2R_5918919_5919093,I_chr2R_5918925_5919213,RI_chr2R_5918952_5919084,RI_chr2R_5918952_5919093 chr2R - chr2R_5918952_5919084 chr2R_5918951_5918952;chr2R_5919084_5919085 chr2R_5918927_5918951;chr2R_5919085_5919090 6.12 3.85 10.53 6.52 0.00 0.00 13.79 5.56 7.59 0.00 8.33 10.53 6.12 8.00 11.36 3.77 2.17 3.12 10.81 1.23 5.00 0.00 0.00 9.09 0.00 4.76 13.21 14.29 13.33 NA 12.20 NA 0.00 4.08 19.05 0.00 12.12 13.79 5.26 22.73 NA 5.63 3.45 6.67 0.00 0.00 4.00 NA 6.49 13.04 7.14 13.64 NA 10.00 1.82 5.00 6.25 NA K alternative_donor CG31716,I_chr2L_10397648_10398034 chr2L + chr2L_10399677_10399767;chr2L_10399713_10399767 chr2L_10399689_10399767 chr2L_10399768_10400679;chr2L_10399595_10399676 53.33 54.00 60.71 56.60 48.15 54.35 52.24 60.44 55.22 56.25 54.55 52.43 56.14 59.18 43.66 46.07 55.32 58.18 58.33 53.68 53.57 53.33 50.00 54.69 55.26 62.75 51.72 52.17 40.00 54.00 47.37 47.06 36.23 51.72 51.35 50.00 54.05 39.13 48.57 47.67 54.76 49.15 53.19 55.00 57.45 46.55 25.00 45.45 52.29 55.32 49.25 47.92 46.88 55.17 58.62 55.56 60.00 48.98 K multi_cassette Hs6st,I_chr3R_15756255_15756482,I_chr3R_15756255_15831956,mira,I_chr3R_15764101_15831956,I_chr3R_15764179_15784434,RI_chr3R_15767991_15768053 chr3R - chr3R_15756255_15831956 chr3R_15756255_15762975;chr3R_15763161_15763223;chr3R_15763773_15763845;chr3R_15764179_15831956 chr3R_15762976_15763160;chr3R_15763224_15763772;chr3R_15763846_15764178 chr3R_15756155_15756254;chr3R_15831957_15832056 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG8611,I_chrX_17309193_17309577 chrX - chrX_17309193_17313480 chrX_17309193_17309577 chrX_17309093_17309192;chrX_17313481_17313908 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 2.38 0.00 NA 2.86 0.00 0.00 0.00 3.12 0.00 0.00 0.00 2.70 0.00 5.26 2.78 2.22 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 K cassette Mef2,CREFI_chr2R_5809509_5845628,RI_chr2R_5846889_5846948 chr2R - chr2R_5809509_5845628 chr2R_5809509_5828249;chr2R_5828459_5845628 chr2R_5828250_5828458 chr2R_5809499_5809508;chr2R_5845629_5845671 85.00 93.75 85.71 64.00 77.78 75.00 64.00 80.00 93.94 83.33 83.33 78.57 76.92 88.24 93.33 84.62 85.71 83.33 80.95 83.33 93.33 81.82 84.21 92.31 87.50 76.92 87.50 75.00 72.73 90.00 94.12 90.00 90.00 80.56 90.00 55.56 76.47 90.00 100.00 87.50 71.43 80.00 92.86 76.47 85.71 73.33 87.50 83.33 80.00 100.00 83.33 90.91 88.89 88.89 85.00 88.89 90.00 90.91 K alternative_donor Pur-alpha,I_chr4_581447_585166 chr4 + chr4_578795_580723 chr4_578927_580723 chr4_580724_580926;chr4_578726_578794 91.66 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention sta chrX - chrX_1376949_1377290 chrX_1376948_1376949;chrX_1377290_1377291 chrX_1376851_1376948;chrX_1377291_1377379 0.45 0.52 0.41 0.20 0.29 0.46 0.35 0.25 0.43 0.84 0.24 0.36 0.20 0.19 0.37 0.49 0.26 0.37 0.28 0.25 0.29 2.07 2.29 0.96 1.17 0.21 2.25 0.92 0.77 0.55 0.46 0.35 0.26 0.36 1.53 1.03 0.79 1.45 1.21 0.17 0.55 0.39 0.45 0.29 0.32 0.46 1.26 0.33 0.60 1.54 2.43 0.85 0.32 3.17 0.33 1.00 0.75 0.44 K alternative_acceptor CG9795,EI_chr3R_145575_147566,RI_chr3R_145613_145675 chr3R + chr3R_145613_147566 chr3R_145613_145675 chr3R_145513_145612;chr3R_147567_147666 31.03 26.67 31.03 28.57 50.00 29.03 37.84 28.95 29.03 29.41 66.67 31.48 37.04 39.13 26.83 34.21 30.77 60.71 32.26 40.00 58.33 40.00 17.78 25.58 22.73 40.00 23.26 43.75 50.00 33.33 37.14 34.62 39.13 31.25 28.57 29.41 25.00 20.69 16.28 24.53 66.67 24.64 29.63 22.22 45.00 37.50 30.00 39.13 25.71 20.93 18.00 26.92 15.79 40.00 28.95 37.04 41.67 50.00 K alternative_last_exon Tequila chr3L + chr3L_9068723_9080948;chr3L_9068723_9069957 chr3L_9068723_9068771 chr3L_9080949_9083048;chr3L_9069958_9070727 chr3L_9068772_9069365 chr3L_9068164_9068722 68.75 60.00 68.18 24.59 75.00 82.35 81.82 71.70 76.36 47.06 71.43 96.55 82.14 74.07 76.92 81.82 73.68 66.67 75.86 96.15 72.73 54.55 77.50 68.75 57.14 42.86 72.73 44.44 27.27 75.00 68.75 63.64 45.16 68.42 61.11 76.00 80.00 71.43 72.22 57.50 53.85 76.47 75.00 70.37 37.50 61.11 53.33 55.88 70.59 15.00 79.17 69.23 50.00 37.50 64.52 62.50 61.54 38.46 K jcn_only_AA smi35A,I_chr2L_14197568_14197656,I_chr2L_14197587_14197656,E_chr2L_14222082_14233893,RI_chr2L_14233579_14233647 chr2L - chr2L_14197568_14197656;chr2L_14197294_14197656 chr2L_14197587_14197656 chr2L_14197657_14197756;chr2L_14196927_14197293 1.43 0.00 0.00 5.32 2.86 6.06 7.50 3.70 0.00 0.00 4.76 1.43 5.77 0.00 0.00 0.00 5.13 12.12 2.70 5.56 0.00 3.62 0.00 1.79 0.00 0.00 1.54 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 1.69 1.67 0.00 5.00 1.37 0.00 2.22 4.35 0.00 3.33 9.62 1.43 0.00 3.45 7.32 0.00 3.70 3.57 0.00 4.17 0.00 K alternative_donor CG30005,I_chr2R_5495525_5495581 chr2R + chr2R_5495523_5495581 chr2R_5495525_5495581 chr2R_5495582_5495681;chr2R_5495425_5495522 0.00 0.00 0.00 4.76 0.00 3.57 10.87 2.27 6.52 NA 0.00 2.70 0.00 3.85 0.00 0.00 0.00 0.00 3.23 2.04 0.00 0.00 5.26 0.00 0.00 9.09 2.94 12.50 0.00 0.00 1.59 3.45 4.35 6.38 3.23 0.00 0.00 0.00 0.00 2.44 4.17 3.77 0.00 0.00 0.00 1.92 0.00 NA 1.33 0.00 5.88 0.00 0.00 0.00 0.00 8.70 2.56 4.17 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2391522_2395659 chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2393243;chrX_2393712_2395659 chrX_2392055_2392148;chrX_2392516_2392664;chrX_2393244_2393711 chrX_2391422_2391521;chrX_2395660_2395759 53.34 NA NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA oho23B,I_chr2L_2856176_2856244,I_chr2L_2856573_2856630,RI_chr2L_2856673_2856772 chr2L + chr2L_2856176_2856218;chr2L_2856176_2856246 chr2L_2856176_2856222 chr2L_2856076_2856175;chr2L_2856247_2856287 0.08 0.11 0.10 0.11 0.00 0.02 0.06 0.15 0.03 0.04 0.06 0.05 0.17 0.05 0.15 0.08 0.12 0.08 0.09 0.03 0.12 0.18 0.03 0.00 0.17 0.08 0.06 0.11 0.00 0.05 0.14 0.00 0.00 0.17 0.00 0.08 0.09 0.10 0.06 0.00 0.04 0.08 0.16 0.10 0.05 0.08 0.18 0.03 0.03 0.10 0.16 0.05 0.00 0.22 0.09 0.12 0.11 0.02 K intron_retention Dref chr2L - chr2L_9964868_9964927 chr2L_9964867_9964868;chr2L_9964927_9964928 chr2L_9964225_9964867;chr2L_9964928_9965315 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 K alternative_acceptor par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,I_chr2R_15350149_15350210,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350285_15351846 chr2R_15350285_15351814 chr2R_15350273_15350284;chr2R_15351847_15351914 88.89 NA NA 63.64 NA NA 85.71 88.89 92.86 NA NA 87.50 NA 88.89 NA 90.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA K intron_retention betaggt-I chr2L + chr2L_4947735_4947825 chr2L_4947734_4947735;chr2L_4947825_4947826 chr2L_4946907_4947734;chr2L_4947826_4948377 83.33 79.45 87.50 83.53 70.83 77.27 84.21 85.00 86.07 79.37 79.49 77.55 65.00 83.33 86.44 86.57 82.50 59.52 85.48 87.00 71.43 65.85 88.89 79.31 87.84 83.64 85.87 60.56 85.39 81.94 87.50 78.12 90.54 87.50 82.98 97.30 82.81 83.15 78.69 82.76 93.33 84.75 82.61 86.21 74.71 87.96 85.06 86.21 79.46 82.80 87.78 80.95 87.50 92.11 79.10 88.00 80.16 81.25 K intron_retention CG12945,I_chr3R_5615604_5615859,I_chr3R_5615807_5615858,RI_chr3R_5616467_5616560 chr3R - chr3R_5616494_5616560 chr3R_5616493_5616494;chr3R_5616560_5616561 chr3R_5616402_5616493;chr3R_5616561_5616629 0.00 0.00 0.00 6.45 0.00 4.17 2.22 0.00 1.52 0.00 2.13 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.00 2.42 0.00 0.00 2.61 1.09 0.00 2.00 3.62 7.25 0.00 1.47 0.00 0.00 0.00 1.33 0.00 2.04 1.23 1.43 0.00 1.49 4.88 1.02 0.00 0.00 0.00 0.00 0.00 0.00 3.16 1.85 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 K intron_retention Srp19,I_chr3L_7340885_7340945 chr3L - chr3L_7340885_7340956 chr3L_7340884_7340885;chr3L_7340956_7340957 chr3L_7340785_7340884;chr3L_7340957_7341045 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 1.64 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 3.57 5.13 13.16 2.13 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 3.12 1.18 0.00 0.00 1.94 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.56 0.00 K intron_retention cni,RI_chr2L_16309575_16309999,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16310637_16310690 chr2L_16310636_16310637;chr2L_16310690_16310691 chr2L_16310441_16310636;chr2L_16310691_16310700 94.12 91.30 92.86 94.67 96.67 94.12 96.15 93.15 94.94 92.31 100.00 90.48 92.31 97.06 86.67 96.55 97.06 80.00 97.87 91.49 95.24 93.33 95.65 90.32 92.59 92.00 100.00 100.00 95.00 100.00 89.74 92.86 100.00 94.20 93.33 100.00 90.48 100.00 92.86 96.97 94.44 96.36 93.75 94.12 94.44 94.74 93.33 94.12 94.59 71.43 96.43 96.00 NA 90.00 93.75 90.91 93.75 90.91 K intron_retention Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_137255_137311 chr4_137254_137255;chr4_137311_137312 chr4_137167_137254;chr4_137312_137344 84.62 NA NA 87.50 NA NA 84.00 92.00 86.67 NA NA 80.00 NA 90.91 NA 84.62 NA NA 88.89 NA NA NA 91.67 NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA 81.25 80.00 NA NA NA NA NA 80.77 NA NA NA NA NA NA NA NA NA K jcn_only_AA Dnz1,I_chr2L_10856029_10856162 chr2L - chr2L_10856029_10856162 chr2L_10856099_10856162 chr2L_10856163_10856262;chr2L_10855929_10856028 100.00 98.44 100.00 100.00 100.00 100.00 100.00 100.00 98.77 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.58 100.00 100.00 99.15 99.18 100.00 100.00 100.00 100.00 97.89 98.39 98.70 100.00 100.00 99.20 100.00 100.00 98.97 100.00 99.36 98.44 100.00 98.64 97.92 100.00 99.46 100.00 100.00 99.49 100.00 98.25 97.83 100.00 98.81 98.89 100.00 100.00 100.00 100.00 K multi_cassette CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261460_265805 chr4_261460_263086;chr4_263306_263801;chr4_264212_264259;chr4_264375_265805 chr4_263087_263305;chr4_263802_264211;chr4_264260_264374 chr4_261360_261459;chr4_265806_265905 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG31216 chr3R + chr3R_15497251_15497308 chr3R_15497250_15497251;chr3R_15497308_15497309 chr3R_15497235_15497250;chr3R_15497309_15497465 90.24 78.26 97.14 92.59 90.48 93.10 90.38 87.34 94.59 91.67 95.65 92.98 80.65 93.33 91.89 91.14 96.97 90.91 95.24 94.64 100.00 62.79 82.14 68.97 93.75 95.24 73.08 67.86 91.30 82.86 88.89 76.19 87.88 97.06 91.67 94.29 86.67 80.00 88.24 89.19 88.89 91.03 94.29 87.18 81.82 82.05 84.62 81.25 92.00 76.47 78.12 80.95 81.25 94.12 90.24 84.00 80.95 91.67 K intron_retention CG11009,I_chr3L_12844823_12845526,I_chr3L_12845441_12845526 chr3L + chr3L_12845378_12845526 chr3L_12845377_12845378;chr3L_12845526_12845527 chr3L_12845344_12845377;chr3L_12845527_12845621 4.00 3.45 2.33 5.43 0.00 8.33 30.00 8.06 6.90 NA 0.00 8.25 8.11 13.79 5.56 8.77 0.00 0.00 10.53 8.43 0.00 2.75 10.00 7.14 10.34 0.00 6.82 4.55 0.00 0.00 4.60 3.70 0.00 7.94 0.00 4.76 0.00 4.00 6.67 0.00 0.00 6.74 12.00 0.00 1.09 0.00 3.08 3.12 8.06 2.20 6.25 4.17 NA 0.00 0.00 0.00 4.08 1.59 K intron_retention RpL35,I_chrX_5566913_5567030,I_chrX_5567168_5567220 chrX + chrX_5566909_5567030 chrX_5566908_5566909;chrX_5567030_5567031 chrX_5566840_5566908;chrX_5567031_5567130 0.30 0.36 0.25 0.22 0.29 0.30 0.76 0.37 0.43 0.45 0.40 0.38 0.24 0.21 0.29 0.16 0.44 0.36 0.21 0.20 0.27 0.21 0.47 0.34 0.56 0.39 0.92 1.14 0.97 0.18 0.18 0.30 0.41 0.30 0.38 0.19 0.35 0.00 0.40 0.31 0.29 0.43 0.27 0.27 0.11 0.17 0.21 0.23 0.59 0.51 0.35 0.63 0.19 0.24 0.36 0.22 0.22 0.19 K intron_retention scyl chr3L + chr3L_11246061_11246802 chr3L_11246060_11246061;chr3L_11246802_11246803 chr3L_11245421_11246060;chr3L_11246803_11247752 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 12.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention AnnIX chr3R + chr3R_16894500_16894559 chr3R_16894499_16894500;chr3R_16894559_16894560 chr3R_16893791_16894499;chr3R_16894560_16894741 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.22 0.00 0.47 0.00 0.58 1.77 0.31 0.00 0.31 0.00 0.16 0.00 0.00 0.00 0.19 0.00 0.00 0.28 0.00 0.00 0.00 0.15 0.00 0.00 0.35 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 K jcn_only_AA CG1646,RI_chr3R_24638061_24638116,RI_chr3R_24638209_24638280,I_chr3R_24641816_24641874 chr3R + chr3R_24638209_24638426 chr3R_24638209_24638280 chr3R_24638117_24638208;chr3R_24638427_24638567 2.96 2.44 2.86 3.17 2.94 6.19 3.12 1.80 4.67 6.25 0.00 2.96 4.55 5.88 2.80 0.99 2.44 1.12 0.00 2.07 1.45 3.00 10.26 3.68 3.85 2.84 0.00 1.30 4.20 0.74 10.14 2.96 1.72 2.56 1.47 3.21 5.56 3.75 5.36 3.10 7.21 3.23 4.48 7.14 3.03 1.05 1.40 0.65 1.02 1.49 2.82 4.69 1.97 5.17 2.61 4.00 3.03 0.55 K intron_retention Sirt2,F_chr3R_16154400_16154450 chr3R + chr3R_16154396_16154450 chr3R_16154395_16154396;chr3R_16154450_16154451 chr3R_16154300_16154395;chr3R_16154451_16154542 12.50 10.81 14.29 12.90 9.68 16.33 12.70 10.47 18.52 0.00 2.56 8.54 12.50 4.65 5.45 11.48 14.29 17.95 15.52 9.47 5.00 7.14 11.54 15.56 5.71 16.36 14.75 12.90 9.09 12.50 18.00 13.64 15.15 12.50 15.15 15.15 5.26 3.57 4.44 10.29 10.81 13.33 16.28 7.69 6.67 12.50 11.76 17.65 9.38 16.28 15.87 13.16 3.23 9.30 16.13 11.76 12.96 27.03 K intron_retention I_chr2L_13965397_13965694,nimB3,RI_chr2L_13967695_13967746 chr2L - chr2L_13967695_13967750 chr2L_13967694_13967695;chr2L_13967750_13967751 chr2L_13967595_13967694;chr2L_13967751_13967841 0.00 0.00 0.00 0.00 0.00 0.00 2.70 1.20 5.83 0.00 0.00 0.00 0.00 0.00 3.39 1.64 0.00 2.86 3.64 1.09 2.78 7.41 0.00 0.00 0.00 2.38 2.08 3.85 6.67 0.00 15.38 0.00 0.00 0.00 0.00 0.00 1.61 0.00 2.33 0.00 2.94 0.00 0.00 0.00 0.00 3.25 0.00 2.44 7.02 0.00 0.00 0.00 0.00 0.00 6.25 0.00 3.70 0.64 K jcn_only_AD CG2017 chr3R - chr3R_1686127_1687468;chr3R_1686127_1687891;chr3R_1686127_1687510 chr3R_1686127_1688092 chr3R_1685454_1686126;chr3R_1688093_1688097 0.00 0.00 0.00 1.61 3.45 4.76 0.00 2.15 0.76 0.00 0.00 0.00 0.00 0.00 0.00 1.54 2.04 3.03 1.49 0.00 1.72 0.71 0.74 0.84 0.00 0.00 0.78 0.00 0.86 0.00 0.00 0.00 0.79 1.10 0.00 0.00 0.00 0.87 0.00 0.00 0.00 1.54 0.00 0.81 1.32 0.79 0.00 2.75 0.00 0.00 0.00 0.00 4.00 0.00 2.90 0.00 0.00 0.00 K intron_retention CG9796 chr3R - chr3R_9225155_9225231 chr3R_9225154_9225155;chr3R_9225231_9225232 chr3R_9224795_9225154;chr3R_9225232_9225366 1.76 0.68 0.00 6.56 1.15 1.12 4.00 3.06 1.65 2.86 0.00 1.88 0.00 0.00 2.94 3.12 2.44 0.00 0.00 2.37 0.00 6.79 2.07 1.65 3.10 2.99 2.94 5.71 10.16 3.09 1.41 2.25 1.42 1.46 1.71 4.31 0.66 1.49 1.87 1.76 5.09 2.78 0.00 1.84 2.10 1.35 0.85 3.46 0.62 1.10 1.94 0.00 0.93 0.00 3.33 1.20 0.59 3.62 K intron_retention CG10191 chr3L - chr3L_13382027_13382093 chr3L_13382026_13382027;chr3L_13382093_13382094 chr3L_13381823_13382026;chr3L_13382094_13383088 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Taf1,I_chr3R_2473463_2473515 chr3R + chr3R_2473324_2473515 chr3R_2473463_2473515 chr3R_2473516_2473615;chr3R_2473016_2473323 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 NA 3.64 0.00 2.94 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 3.51 NA 2.08 NA 0.00 NA 1.56 0.00 2.78 1.96 0.00 0.00 NA 0.00 NA NA 0.00 K intron_retention Arf79F,I_chr3L_22863166_22863946,I_chr3L_22863166_22864419,RI_chr3L_22863251_22863389,RI_chr3L_22863251_22863952,I_chr3L_22863251_22864009,I_chr3L_22863251_22864188,I_chr3L_22863251_22864501,I_chr3L_22863251_22864629,RI_chr3L_22863251_22864763,I_chr3L_22863251_22864866,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22863166_22864559 chr3L_22863165_22863166;chr3L_22864559_22864560 chr3L_22863151_22863165;chr3L_22864560_22864601 98.19 98.12 99.05 98.43 96.90 98.25 98.04 98.17 98.13 95.41 98.03 99.23 99.50 97.85 98.73 96.98 99.43 97.19 98.20 99.41 98.17 97.33 96.65 98.57 99.02 98.55 98.55 97.86 96.99 95.41 95.85 98.79 97.60 97.98 99.47 98.19 96.34 96.82 99.56 97.55 99.43 99.73 99.32 98.46 98.71 98.50 99.32 98.06 98.42 97.54 98.09 97.84 98.84 98.99 98.48 99.07 97.69 96.34 K alternative_donor qkr54B chr2R + chr2R_13360310_13360591 chr2R_13360315_13360591 chr2R_13360592_13361228;chr2R_13359998_13360309 96.82 96.55 96.77 94.00 100.00 100.00 98.33 98.08 98.75 100.00 94.74 94.55 100.00 90.00 100.00 92.98 100.00 91.30 97.06 96.30 100.00 100.00 97.67 94.87 95.83 100.00 94.92 91.67 95.65 100.00 97.10 95.45 100.00 96.23 94.12 95.65 96.55 95.00 96.77 98.21 100.00 96.88 96.15 95.12 100.00 96.97 97.30 100.00 100.00 95.77 97.78 NA 91.67 96.15 100.00 97.37 96.30 96.00 K jcn_only_AD CaMKI,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,RI_chr4_467374_467424,RI_chr4_467482_467543,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_467273_467446;chr4_467378_467446 chr4_467374_467446 chr4_467447_467481;chr4_467266_467272 16.65 NA NA NA NA NA 11.11 21.21 18.00 NA NA NA 26.92 9.09 NA 19.51 NA NA 9.09 15.91 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA 18.92 NA NA NA NA NA 12.50 NA 20.69 4.55 NA NA NA NA NA 6.98 NA NA NA NA NA 15.38 NA 17.39 NA K jcn_only_AA CG8520,I_chr2R_8312580_8312637 chr2R + chr2R_8312580_8312637 chr2R_8312580_8312633 chr2R_8312480_8312579;chr2R_8312638_8312737 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 98.18 NA NA 97.30 NA 100.00 100.00 96.15 100.00 NA 100.00 98.08 96.15 95.00 100.00 97.67 NA 90.48 100.00 NA NA NA 95.35 NA NA 97.62 NA 95.65 100.00 NA 95.65 100.00 96.15 100.00 NA 92.31 NA 100.00 97.30 NA 100.00 100.00 96.15 100.00 100.00 100.00 96.55 95.65 97.92 100.00 K intron_retention CG14133 chr3L - chr3L_11684082_11684139 chr3L_11684081_11684082;chr3L_11684139_11684140 chr3L_11684025_11684081;chr3L_11684140_11684208 32.05 NA NA NA NA NA 50.00 NA 33.33 NA NA 41.67 NA NA NA NA NA NA 38.46 26.32 NA NA NA NA NA NA NA NA NA NA 47.06 NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA 28.57 NA NA NA NA NA NA 30.77 30.77 NA K jcn_only_AA Amun,I_chrX_11607839_11608272,I_chrX_11607842_11608105,I_chrX_11607842_11608125,RI_chrX_11607842_11608272 chrX - chrX_11607839_11608590 chrX_11607842_11608590 chrX_11608591_11608810;chrX_11607788_11607838 72.57 NA 60.71 72.41 81.82 68.18 66.67 67.65 70.89 NA 75.00 65.12 NA 65.00 60.00 79.17 NA NA 62.07 77.46 NA 73.33 NA NA NA NA NA NA 83.33 66.18 79.31 73.24 61.60 76.32 82.76 65.62 60.71 NA NA 74.07 67.44 79.49 NA 77.27 81.97 65.12 NA 74.38 70.00 72.73 NA NA 75.00 NA 79.41 NA NA 68.34 K intron_retention CG1718 chrX - chrX_21163958_21164390 chrX_21163957_21163958;chrX_21164390_21164391 chrX_21163741_21163957;chrX_21164391_21164557 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 NA 95.24 100.00 100.00 94.44 100.00 100.00 90.91 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 94.12 100.00 93.75 100.00 88.89 100.00 100.00 95.65 100.00 100.00 100.00 100.00 93.33 95.65 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 90.91 100.00 94.12 100.00 93.33 100.00 K intron_retention CG17912,I_chr2L_16749189_16749266 chr2L + chr2L_16749189_16749290 chr2L_16749188_16749189;chr2L_16749290_16749291 chr2L_16749153_16749188;chr2L_16749291_16749366 4.20 0.00 5.88 37.50 0.00 11.11 6.90 27.59 4.55 7.32 13.33 9.09 NA 5.56 5.56 9.09 NA 6.25 NA 1.92 0.00 24.24 3.16 6.94 0.00 NA 7.41 6.82 16.67 1.64 NA NA 11.76 7.69 3.85 12.12 3.33 0.00 1.20 2.86 0.00 2.08 NA 1.72 0.00 5.71 2.17 3.85 5.13 5.71 3.64 0.00 2.78 0.00 0.00 5.13 2.08 0.00 N cassette PpD3,CG8412,I_chr3R_5583152_5583200 chr3R + chr3R_5574124_5574631 chr3R_5574124_5574333;chr3R_5574576_5574631 chr3R_5574334_5574575 chr3R_5573897_5574123;chr3R_5574632_5574782 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 89.66 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG6420 chr3R - chr3R_22548837_22549888 chr3R_22548836_22548837;chr3R_22549888_22549889 chr3R_22548648_22548836;chr3R_22549889_22550937 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 4.76 3.85 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 2.82 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_16982134_16983159 chr3R_16982133_16982134;chr3R_16983159_16983160 chr3R_16982126_16982133;chr3R_16983160_16983379 21.43 NA NA 20.00 NA NA 36.00 24.14 21.88 NA NA 16.67 11.76 26.32 21.43 32.00 15.38 NA 17.65 0.00 NA NA NA NA NA NA NA NA NA NA 22.73 NA NA 20.69 NA NA NA NA NA NA NA 24.14 NA NA NA NA NA NA 24.14 NA NA NA NA NA 16.67 NA NA NA K intron_retention Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16108931_16110644 chr3L_16108930_16108931;chr3L_16110644_16110645 chr3L_16108769_16108930;chr3L_16110645_16111208 16.67 NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Myb,RI_chrX_15752571_15753225 chrX - chrX_15751647_15751709 chrX_15751646_15751647;chrX_15751709_15751710 chrX_15749823_15751646;chrX_15751710_15751876 100.00 100.00 96.43 92.59 100.00 100.00 97.50 100.00 100.00 100.00 92.86 97.92 95.65 96.30 100.00 97.06 100.00 100.00 97.56 98.04 100.00 95.24 100.00 94.74 94.12 100.00 100.00 100.00 90.00 93.33 100.00 92.31 100.00 98.33 95.00 95.65 100.00 100.00 100.00 89.74 100.00 97.92 96.43 100.00 100.00 100.00 100.00 100.00 98.41 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 96.55 K intron_retention mthl10 chr3L - chr3L_334120_334974 chr3L_334119_334120;chr3L_334974_334975 chr3L_334067_334119;chr3L_334975_335169 20.00 19.15 18.00 32.14 17.31 26.47 24.32 16.05 16.81 20.00 20.00 24.64 39.47 19.51 19.57 12.31 17.39 17.95 17.54 26.09 20.00 23.53 32.26 21.21 35.29 36.36 30.00 NA 36.84 18.75 37.50 18.52 15.38 12.86 20.00 13.64 28.95 7.41 26.47 24.59 31.58 25.32 12.50 11.86 14.29 20.93 16.00 24.14 20.83 15.15 22.50 24.14 12.00 26.32 14.29 20.00 17.14 14.29 K intron_retention daw,I_chr2L_2810644_2810693 chr2L + chr2L_2810644_2811148 chr2L_2810643_2810644;chr2L_2811148_2811149 chr2L_2810544_2810643;chr2L_2811149_2811528 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 3.23 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1969,CG1972 chr3R + chr3R_25572460_25572514 chr3R_25572459_25572460;chr3R_25572514_25572515 chr3R_25571485_25572459;chr3R_25572515_25573224 0.00 0.00 0.00 0.95 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.60 0.00 1.32 0.00 0.51 0.00 0.65 1.04 0.54 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.71 0.00 0.00 0.96 0.78 0.83 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 N jcn_only_AA CG15099 chr2R - chr2R_14725051_14725138 chr2R_14725074_14725138 chr2R_14725139_14725207;chr2R_14724985_14725050 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 67.16 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention scra,EI_chr2R_3480349_3480405 chr2R + chr2R_3479809_3479866 chr2R_3479808_3479809;chr2R_3479866_3479867 chr2R_3479443_3479808;chr2R_3479867_3480038 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 K intron_retention Rala chrX - chrX_3600285_3601400 chrX_3600284_3600285;chrX_3601400_3601401 chrX_3599901_3600284;chrX_3601401_3601524 73.91 52.63 68.18 79.41 35.00 56.52 73.53 81.25 60.00 36.84 NA 69.39 83.33 70.37 64.71 84.44 52.63 73.33 58.62 69.23 88.89 90.00 77.78 77.78 71.43 36.84 75.00 NA 93.75 80.00 65.38 75.86 79.17 68.09 78.95 71.43 64.71 80.00 80.00 84.62 80.95 66.67 71.43 68.18 77.78 90.24 88.24 81.63 67.31 73.33 73.91 77.78 60.00 81.25 78.26 82.35 68.18 74.60 K alternative_donor CG32016,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_978750_978816;chr4_978750_978939;chr4_978750_978910 chr4_978750_978914 chr4_978632_978749;chr4_978940_978943 35.71 NA NA NA NA NA 28.57 54.55 50.00 NA NA 50.00 NA 20.00 NA 35.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG33298 chr2L + chr2L_9519480_9519719 chr2L_9519535_9519719 chr2L_9519720_9520654;chr2L_9519394_9519479 1.04 1.85 0.00 0.00 0.00 2.94 0.00 0.82 1.47 0.00 1.96 2.38 1.45 2.78 1.35 2.22 0.00 1.85 0.00 1.04 0.00 1.80 2.47 0.00 4.00 0.00 0.00 4.00 6.25 0.00 4.55 0.00 2.27 0.00 2.63 0.00 0.00 0.00 0.00 0.00 4.00 2.31 1.89 0.00 3.57 0.00 2.33 3.70 4.35 2.74 0.00 0.00 3.33 0.00 0.00 0.00 0.00 3.92 K intron_retention CG7609,ATPsyn-gamma,I_chr3R_25574492_25574541 chr3R - chr3R_25574492_25574545 chr3R_25574491_25574492;chr3R_25574545_25574546 chr3R_25574392_25574491;chr3R_25574546_25574564 17.63 18.18 15.17 16.69 17.03 15.34 17.25 15.92 17.63 10.17 14.80 15.84 23.53 18.59 16.95 18.13 18.43 18.21 18.66 17.81 16.78 28.57 6.31 4.32 5.83 20.23 44.44 58.82 51.69 30.53 15.79 32.07 34.35 16.36 35.59 45.10 8.18 12.50 5.45 35.74 39.42 16.87 15.26 28.75 23.45 35.00 9.28 37.61 15.81 8.97 11.11 7.38 30.39 21.43 18.14 10.39 10.27 38.82 K alternative_donor CG11148,RI_chr4_886921_887162 chr4 - chr4_886921_887601;chr4_886921_887162;chr4_886921_887591 chr4_886921_887595 chr4_886821_886920;chr4_887602_887637 41.67 30.00 50.00 32.35 57.89 70.00 40.91 35.14 45.45 NA 21.43 40.74 43.75 55.56 29.17 42.86 47.37 33.33 36.36 42.86 30.77 NA 45.45 27.27 50.00 60.00 37.50 33.33 50.00 40.00 41.67 NA 52.38 34.38 NA 45.45 NA NA NA 47.83 NA 34.29 26.32 38.46 NA NA NA 38.46 48.89 85.71 27.27 NA NA NA 52.63 NA NA 42.86 K jcn_only_AD Cht2,I_chr3L_1754361_1754605,I_chr3L_1754361_1754860 chr3L - chr3L_1754361_1754860;chr3L_1754361_1754605 chr3L_1754361_1755586 chr3L_1754261_1754360;chr3L_1755587_1755934 45.49 NA 29.17 72.73 47.83 35.71 NA 42.31 69.70 NA 52.17 39.13 NA 36.00 50.00 21.74 NA 56.52 55.00 44.83 NA NA NA NA NA 65.00 NA NA NA NA 29.17 NA NA 43.75 NA NA NA NA NA NA NA 51.22 NA NA NA NA NA NA 46.15 NA NA NA NA NA 37.50 NA NA NA N jcn_only_AA EF_chr2R_8548702_8595112,nemy chr2R - chr2R_8561434_8563629;chr2R_8560845_8563629;chr2R_8561431_8563629 chr2R_8563548_8563629 chr2R_8563630_8563736 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CREF_chr3R_5589662_5589762,CG8500 chr3R + chr3R_5610483_5611473 chr3R_5610482_5610483;chr3R_5611473_5611474 chr3R_5610477_5610482;chr3R_5611474_5611635 19.05 14.29 14.29 17.65 38.46 20.00 12.50 11.43 10.81 NA NA 27.59 10.53 0.00 18.52 19.23 NA 50.00 19.05 24.24 NA NA NA NA NA 38.46 6.67 NA NA NA 12.00 NA NA 18.52 NA 23.08 NA NA NA 27.27 NA 23.68 NA NA NA NA NA NA 18.42 NA 21.05 NA NA NA 20.00 NA NA 26.67 K cassette slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,I_chr2R_20289332_20290093 chr2R - chr2R_20280727_20283565 chr2R_20280727_20281010;chr2R_20281038_20283565 chr2R_20281011_20281037 chr2R_20279743_20280726;chr2R_20283566_20283698 43.48 45.45 41.18 18.56 31.67 33.87 48.48 31.43 39.32 37.04 44.07 50.55 51.79 49.12 42.86 49.30 48.98 43.14 51.52 32.84 35.71 20.69 39.80 47.67 29.31 40.00 30.59 67.50 40.79 40.26 40.28 43.33 48.57 43.62 28.30 52.38 34.96 47.14 42.53 56.10 44.93 40.91 50.00 59.15 66.67 44.32 41.30 50.56 50.51 46.91 36.47 52.08 52.94 37.50 43.48 36.76 55.22 60.95 K intron_retention tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_562975_563035 chr3R_562974_562975;chr3R_563035_563036 chr3R_562905_562974;chr3R_563036_563097 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 4.26 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG7530,I_chr3R_10553050_10555615,eff chr3R - chr3R_10553050_10556232 chr3R_10553050_10554503 chr3R_10552950_10553049;chr3R_10556233_10556351 5.13 4.32 5.05 8.08 4.08 4.40 10.96 8.82 7.50 3.85 5.63 6.72 7.89 8.05 6.06 11.32 5.32 7.58 8.08 6.08 4.44 12.50 3.87 3.25 5.77 5.63 3.08 2.78 4.35 3.33 5.88 6.82 2.90 8.15 5.88 5.13 1.89 2.80 2.56 4.90 9.09 6.25 7.00 4.08 3.85 6.74 2.56 9.52 6.47 3.70 4.88 4.11 0.78 3.28 7.08 3.57 2.26 3.49 K alternative_acceptor RI_chr3R_7644683_7644880,CG6950,I_chr3R_7647556_7647628 chr3R - chr3R_7647542_7647628 chr3R_7647556_7647628 chr3R_7647629_7647728;chr3R_7647456_7647541 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor mbc,I_chr3R_19615584_19615649,I_chr3R_19625220_19625288 chr3R + chr3R_19625373_19625589 chr3R_19625373_19625465 chr3R_19625289_19625372;chr3R_19625590_19625680 7.48 8.89 7.50 7.00 2.63 4.65 10.53 5.71 5.37 10.71 5.66 7.48 8.51 5.77 4.48 2.86 6.56 3.57 4.17 6.00 8.00 6.82 7.14 7.58 14.29 4.08 7.81 7.41 7.41 12.12 4.17 22.22 21.05 3.88 11.76 13.33 9.23 10.81 10.42 11.86 13.04 5.45 5.71 4.35 9.09 10.42 8.77 13.79 6.98 6.56 10.14 5.88 8.82 3.92 5.56 9.09 11.76 30.77 K intron_retention CG1815,I_chr3R_27501104_27501167,I_chr3R_27501104_27501176 chr3R + chr3R_27501104_27501179 chr3R_27501103_27501104;chr3R_27501179_27501180 chr3R_27501004_27501103;chr3R_27501180_27501267 95.50 92.50 95.56 98.48 97.06 97.30 91.38 95.59 97.59 93.33 93.55 94.94 92.31 97.37 97.87 98.15 87.50 95.24 97.92 95.60 95.65 93.33 94.92 89.29 97.06 97.73 94.55 94.74 96.00 94.00 93.22 97.83 89.77 90.79 93.44 97.96 98.46 91.89 96.97 96.34 98.08 96.97 96.88 100.00 89.09 91.04 96.55 95.50 91.86 94.34 92.73 88.89 97.22 96.15 95.31 97.50 88.57 95.40 K jcn_only_AD CG15881,RI_chr3L_19799338_19799394,RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19799338_19799405;chr3L_19798903_19799405 chr3L_19798419_19799405 chr3L_19799406_19799494;chr3L_19798405_19798418 0.00 0.00 4.55 0.00 NA NA 0.00 3.57 0.00 NA 4.35 0.00 NA NA NA 0.00 NA 0.00 4.00 0.00 4.17 0.00 NA 3.03 NA NA 10.34 NA NA 0.00 0.00 0.00 0.00 0.00 5.00 NA 0.00 0.00 0.00 0.00 NA 5.71 NA 0.00 0.00 1.96 0.00 0.00 0.00 0.00 2.86 0.00 0.00 2.56 0.00 2.22 0.00 0.00 K jcn_only_AD CG11248 chr3L + chr3L_21673324_21673399;chr3L_21673333_21673399 chr3L_21673253_21673399 chr3L_21673400_21675533;chr3L_21673237_21673252 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG2924,I_chrX_2160702_2160852,I_chrX_2160752_2160852,I_chrX_2163738_2164560,I_chrX_2168373_2168893 chrX - chrX_2160705_2160852 chrX_2160752_2160852 chrX_2160853_2160952;chrX_2160652_2160704 0.00 0.00 0.00 0.00 4.00 0.00 2.56 0.00 4.05 1.89 0.00 0.00 0.00 0.00 2.22 1.35 0.00 2.70 2.17 2.76 0.00 1.14 2.38 0.00 0.00 0.00 6.45 0.00 1.54 0.00 3.85 0.00 2.15 1.56 3.45 0.00 0.00 0.00 0.00 3.03 1.23 1.16 3.70 0.00 0.00 2.27 3.45 1.20 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.76 K alternative_donor gbb chr2R + chr2R_19739125_19739205 chr2R_19739129_19739205 chr2R_19739206_19740772;chr2R_19739106_19739124 90.48 91.67 85.71 84.09 95.00 92.86 68.63 88.24 79.37 NA 89.29 93.88 85.71 80.00 96.30 97.22 90.48 78.26 82.86 92.00 84.00 78.95 NA NA NA 100.00 NA NA 100.00 NA 96.77 93.75 80.95 97.50 NA NA NA NA NA NA 94.74 91.84 85.00 NA 84.00 93.33 NA 94.74 85.00 NA NA NA NA NA 93.94 NA NA 89.29 K intron_retention I_chr2L_19644636_19644695,REI_chr2L_19702035_19702145,Nf-YB chr2L + chr2L_19736209_19736272 chr2L_19736208_19736209;chr2L_19736272_19736273 chr2L_19736042_19736208;chr2L_19736273_19736580 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 3.57 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1814,Updo chr2R + chr2R_5468510_5468570 chr2R_5468509_5468510;chr2R_5468570_5468571 chr2R_5468323_5468509;chr2R_5468571_5468711 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 1.72 0.00 0.00 4.26 0.00 0.00 0.00 3.85 0.00 4.35 5.26 2.90 NA 0.00 0.00 4.76 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 2.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 8.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention dally,I_chr3L_8821604_8828151 chr3L + chr3L_8881235_8881751 chr3L_8881234_8881235;chr3L_8881751_8881752 chr3L_8881059_8881234;chr3L_8881752_8881959 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mRpS23 chr2L - chr2L_13834884_13834938 chr2L_13834883_13834884;chr2L_13834938_13834939 chr2L_13834722_13834883;chr2L_13834939_13835141 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.75 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG16721 chrX + chrX_5775355_5775418 chrX_5775354_5775355;chrX_5775418_5775419 chrX_5774867_5775354;chrX_5775419_5775903 0.00 0.00 0.00 2.78 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 3.45 0.00 2.15 0.00 3.82 0.00 0.00 0.00 0.00 0.00 1.47 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 K intron_retention CG4622 chr2R - chr2R_20422610_20422664 chr2R_20422609_20422610;chr2R_20422664_20422665 chr2R_20421938_20422609;chr2R_20422665_20422849 5.72 NA 11.11 9.52 NA NA 14.29 21.05 12.20 NA NA 4.35 NA NA NA NA NA NA 6.67 0.00 NA 12.50 0.00 0.00 NA NA 21.05 NA NA NA NA 0.00 NA NA 0.00 16.67 8.70 NA 5.56 4.35 NA 14.29 NA 0.00 NA 6.25 0.00 NA 9.09 0.00 4.76 NA 5.88 0.00 19.05 NA 4.17 0.00 K intron_retention Ranbp16,I_chrX_15826655_15827277 chrX - chrX_15821870_15823373 chrX_15821869_15821870;chrX_15823373_15823374 chrX_15821732_15821869;chrX_15823374_15823435 0.00 5.00 0.00 4.88 0.00 0.00 9.68 0.00 11.43 NA NA 7.89 0.00 0.00 6.67 3.45 4.35 NA 4.76 2.22 NA 23.08 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 3.12 4.76 NA 5.71 6.67 NA 0.00 0.00 0.00 0.00 NA 4.17 5.00 0.00 0.00 0.00 0.00 6.67 0.00 NA 4.76 0.00 NA NA 6.67 0.00 4.76 0.00 K intron_retention CG12945,I_chr3R_5615604_5615859,I_chr3R_5615807_5615858,RI_chr3R_5616467_5616560 chr3R - chr3R_5615807_5615859 chr3R_5615806_5615807;chr3R_5615859_5615860 chr3R_5615707_5615806;chr3R_5615860_5615958 0.00 0.00 0.00 14.47 0.00 9.09 5.63 0.00 7.25 NA 0.00 4.92 0.00 2.44 0.00 7.59 7.14 0.00 5.88 4.62 0.00 0.00 5.26 0.00 5.56 22.22 0.00 9.09 21.43 0.00 6.38 4.55 0.00 5.33 0.00 13.64 NA 0.00 0.00 2.94 8.33 1.67 2.70 0.00 0.00 5.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 K jcn_only_AD hppy,I_chr2R_15066378_15066915,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15066304_15067003;chr2R_15066378_15067003;chr2R_15066358_15067003 chr2R_15066243_15067003 chr2R_15067004_15067015;chr2R_15066237_15066242 0.00 NA NA NA NA NA NA NA 0.00 NA NA 4.55 NA NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K jcn_only_AA cic chr3R + chr3R_16125516_16125689 chr3R_16125516_16125674 chr3R_16125423_16125515;chr3R_16125690_16125874 84.25 86.87 79.26 71.64 80.52 82.19 90.48 79.84 84.91 97.30 82.30 85.31 85.44 81.94 78.95 80.52 78.67 82.56 84.25 83.52 84.00 87.40 84.62 86.27 98.47 96.26 70.98 66.23 87.61 84.83 82.25 91.03 86.27 84.33 88.19 94.67 87.83 86.93 87.93 83.46 95.89 87.60 82.93 90.84 75.28 83.22 87.35 86.39 84.07 84.91 82.03 82.58 81.02 88.46 83.74 80.16 78.31 82.61 K intron_retention alien chr2L - chr2L_8995747_8995803 chr2L_8995746_8995747;chr2L_8995803_8995804 chr2L_8995602_8995746;chr2L_8995804_8996136 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.38 0.00 0.00 0.00 0.00 0.00 1.43 1.13 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.62 0.00 0.00 1.14 1.40 0.00 0.68 0.00 N multi_cassette CG6643,I_chr3R_20370792_20375406 chr3R + chr3R_20378379_20380423 chr3R_20378379_20379716;chr3R_20379803_20380077;chr3R_20380127_20380423 chr3R_20379717_20379802;chr3R_20380078_20380126 chr3R_20378208_20378378;chr3R_20380424_20380855 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 42.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor pigeon chr2L + chr2L_19187018_19187078 chr2L_19187021_19187078 chr2L_19187079_19188242;chr2L_19186980_19187017 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA 100.00 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA 100.00 NA 100.00 NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA K jcn_only_AA PP2A-B',I_chr3R_13997426_13997884 chr3R + chr3R_13997426_14001054;chr3R_13997426_13998847 chr3R_13997426_13997884 chr3R_13997326_13997425 0.00 0.00 0.00 0.00 0.00 0.00 1.56 1.05 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 1.03 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 1.10 2.20 0.00 0.00 0.00 1.89 0.00 1.12 0.00 K intron_retention bves chrX + chrX_20946550_20946618 chrX_20946549_20946550;chrX_20946618_20946619 chrX_20946392_20946549;chrX_20946619_20946721 0.00 0.00 4.35 0.00 0.00 0.00 6.25 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA 5.13 NA 4.65 0.00 0.00 10.53 33.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.05 0.00 0.00 5.26 4.44 NA 4.65 NA 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG14619,I_chrX_21869837_21869915 chrX + chrX_21869837_21869947 chrX_21869837_21869915 chrX_21869758_21869836;chrX_21869948_21870015 0.00 1.18 0.00 0.00 0.00 1.22 0.00 0.00 0.35 0.00 0.00 0.55 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.97 0.00 0.00 0.52 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention fwd,I_chr3L_310787_310918,RI_chr3L_319514_319746 chr3L - chr3L_310787_311173 chr3L_310786_310787;chr3L_311173_311174 chr3L_310687_310786;chr3L_311174_311285 1.94 1.79 3.16 0.00 0.00 0.00 3.37 0.00 3.21 0.00 3.70 4.00 8.47 0.00 2.33 0.79 0.00 0.00 1.22 1.45 1.92 7.02 2.44 2.30 6.45 5.00 2.67 0.00 8.33 0.00 2.38 0.00 6.35 0.00 3.03 3.03 1.45 4.48 0.00 3.36 0.00 2.92 0.00 1.94 3.45 3.03 0.00 3.95 2.98 0.00 3.85 3.08 2.94 0.00 1.83 0.00 0.00 0.00 K intron_retention noncoding_20681 chr4 + chr4_480534_480681 chr4_480533_480534;chr4_480681_480682 chr4_480513_480533;chr4_480682_480767 93.75 100.00 100.00 85.00 NA 100.00 84.38 93.55 96.67 NA NA 94.12 93.75 88.24 90.00 96.15 100.00 88.89 94.74 94.12 NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA 93.75 NA NA NA NA NA 100.00 90.00 92.59 93.33 NA NA 93.75 NA 92.31 91.67 100.00 88.89 NA NA NA NA 100.00 90.91 95.24 K alternative_donor CG9775,I_chr3R_464132_464367,I_chr3R_466059_466296 chr3R - chr3R_465475_465734 chr3R_465475_465590 chr3R_465356_465474;chr3R_465735_466058 17.54 13.04 17.65 18.31 16.95 17.54 33.33 22.54 13.51 9.38 17.31 14.29 21.05 19.23 21.54 24.14 13.21 21.82 20.00 13.24 16.13 17.78 16.19 15.74 21.82 20.41 32.35 13.04 30.77 7.69 52.17 14.29 20.34 20.00 22.50 40.54 8.61 10.89 14.96 17.65 25.71 16.42 15.38 22.92 11.69 25.37 11.11 15.38 19.33 16.44 25.64 20.69 11.54 11.59 17.95 15.85 12.37 17.31 K alternative_acceptor Ddip2,I_chr3L_252776_253313 chr3L - chr3L_256591_256648 chr3L_256594_256648 chr3L_256649_256793;chr3L_256214_256590 87.50 92.31 88.89 92.00 92.31 94.12 84.62 85.19 76.32 100.00 90.00 68.97 82.61 100.00 91.67 96.30 90.91 87.50 84.21 90.00 75.00 87.10 84.00 92.31 66.67 84.62 88.24 88.89 84.62 87.50 83.33 NA 89.47 83.33 78.57 94.44 93.75 75.00 90.00 85.19 80.00 86.49 91.67 81.82 NA 88.89 88.89 77.78 86.21 NA 91.67 87.50 NA NA 80.95 NA NA 60.00 K intron_retention RI_chr3L_707623_707678,CkIIalpha-i3,CG13896,RI_chr3L_711692_711744 chr3L - chr3L_710248_710309 chr3L_710247_710248;chr3L_710309_710310 chr3L_709738_710247;chr3L_710310_710322 100.00 100.00 92.31 96.15 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 93.33 94.12 95.83 100.00 100.00 100.00 100.00 90.00 100.00 100.00 92.31 100.00 100.00 100.00 NA 100.00 100.00 92.31 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 90.00 100.00 96.67 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K alternative_donor chico,I_chr2L_10246534_10246899 chr2L - chr2L_10246040_10246184;chr2L_10246040_10247024;chr2L_10246040_10246755;chr2L_10246040_10246867 chr2L_10246040_10246899 chr2L_10245878_10246039;chr2L_10247025_10247051 73.08 72.22 73.08 77.42 83.33 66.67 62.07 63.89 69.57 87.50 76.92 71.05 72.73 69.57 75.00 67.44 57.89 64.71 61.54 67.92 50.00 68.75 75.00 68.75 71.43 63.16 57.89 70.00 61.11 87.50 75.00 88.24 76.19 74.29 80.00 76.47 81.48 85.71 68.18 82.22 66.67 67.57 64.71 72.41 85.71 78.57 88.89 80.00 70.73 91.67 77.78 90.91 76.92 83.33 67.74 90.91 75.00 79.17 K intron_retention C3G chrX - chrX_6683085_6683744 chrX_6683084_6683085;chrX_6683744_6683745 chrX_6682502_6683084;chrX_6683745_6683770 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG9253,snoRNA:Me18S-A469 chr2L + chr2L_21143823_21144011 chr2L_21143823_21143996 chr2L_21143564_21143822;chr2L_21144012_21145146 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 1.09 2.56 1.18 0.00 0.00 0.00 1.71 0.00 0.00 0.00 0.00 1.30 0.93 0.00 0.50 0.79 1.02 0.68 2.54 0.00 0.00 1.61 0.00 0.00 0.68 0.00 0.76 0.70 0.00 0.81 0.95 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.60 0.00 0.00 0.43 0.00 0.00 1.55 0.00 1.52 K intron_retention I_chr3R_17177101_17200781,mod(mdg4),RI_chr3R_17183087_17183245,RI_chr3R_17183087_17183726,I_chr3R_17183481_17200781,I_chr3R_17183927_17184513,I_chr3R_17183927_17185306,RI_chr3R_17184319_17184513,I_chr3R_17184319_17185084,I_chr3R_17184319_17185284,noncoding_18168,RI_chr3R_17184792_17185306,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,RI_chr3R_17189607_17189988,I_chr3R_17190098_17190207,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17182691_17182836 chr3R_17182690_17182691;chr3R_17182836_17182837 chr3R_17182533_17182690;chr3R_17182837_17183086 78.57 NA NA 90.91 NA NA 63.64 87.50 83.33 NA NA 71.43 NA NA NA 70.00 NA NA NA NA NA 58.33 36.36 NA NA NA NA NA NA NA NA NA NA 78.57 88.89 NA NA NA NA 100.00 NA 82.35 NA NA NA NA NA NA 78.57 NA NA NA NA NA 66.67 NA 66.67 NA K alternative_donor cact,RI_chr2L_16314859_16315116,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16325055_16325587;chr2L_16325055_16325493 chr2L_16325055_16325577 chr2L_16324333_16325054;chr2L_16325588_16325598 0.00 0.00 0.00 3.08 2.50 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG33129,I_chr2L_10966410_10967142,noncoding_2515,I_chr2L_10966622_10967108 chr2L - chr2L_10966622_10968104;chr2L_10966622_10968083;chr2L_10966622_10968133 chr2L_10966622_10967855 chr2L_10966522_10966621;chr2L_10968134_10968152 2.50 0.00 4.55 3.49 0.00 0.00 5.00 2.50 2.29 9.09 2.22 2.33 5.13 4.17 1.61 2.50 0.00 2.17 3.28 3.25 2.94 6.25 10.00 15.38 NA 0.00 16.67 NA 0.00 NA 2.22 0.00 0.00 4.65 NA 8.33 9.09 NA NA 9.09 0.00 2.80 2.56 NA 0.00 0.00 NA 4.35 2.59 NA 12.50 0.00 NA NA 1.92 NA 0.00 0.00 K intron_retention RPA2,RI_chr2L_20925851_20925909 chr2L - chr2L_20925851_20925909 chr2L_20925850_20925851;chr2L_20925909_20925910 chr2L_20925751_20925850;chr2L_20925910_20925975 77.78 NA NA NA NA NA NA NA 77.78 NA NA NA NA NA NA NA NA NA NA 69.23 NA 100.00 71.43 87.50 100.00 100.00 78.57 NA 95.00 NA NA NA NA NA NA NA 63.64 NA 60.00 100.00 100.00 NA NA NA NA NA 77.78 NA NA 77.78 66.67 NA NA NA NA 72.73 NA NA K alternative_acceptor CG31705,I_chr2L_11525668_11525916 chr2L - chr2L_11525668_11528120 chr2L_11526013_11528120 chr2L_11528121_11528201;chr2L_11525594_11525667 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.10 0.67 0.00 0.14 0.00 0.26 0.00 0.18 0.00 0.00 0.00 0.09 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Vps13,I_chr2R_3464510_3464571 chr2R + chr2R_3466916_3466980 chr2R_3466915_3466916;chr2R_3466980_3466981 chr2R_3466815_3466915;chr2R_3466981_3466986 0.00 5.26 0.00 14.63 NA 0.00 0.00 0.00 0.00 15.00 0.00 6.06 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 19.61 4.00 0.00 12.00 22.22 8.00 17.65 12.50 0.00 4.08 4.76 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 9.52 2.00 0.00 0.00 0.00 0.00 0.00 4.76 5.26 5.00 0.00 4.76 0.00 0.00 2.56 0.00 0.00 0.00 K intron_retention alpha-Spec chr3L - chr3L_1779311_1779384 chr3L_1779310_1779311;chr3L_1779384_1779385 chr3L_1779111_1779310;chr3L_1779385_1779985 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.46 0.00 0.00 0.12 0.14 0.00 0.00 0.64 0.27 0.51 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.23 0.00 0.48 0.37 0.50 0.41 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 K intron_retention CG10137,CG33116 chr2L + chr2L_19530190_19530889 chr2L_19530189_19530190;chr2L_19530889_19530890 chr2L_19530090_19530189;chr2L_19530890_19530896 43.65 NA NA 72.73 NA NA NA NA 44.44 NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA 30.77 NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA 42.86 NA NA NA NA NA 45.45 NA NA NA K intron_retention mnb chrX - chrX_17764213_17764287 chrX_17764212_17764213;chrX_17764287_17764288 chrX_17763926_17764212;chrX_17764288_17764455 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6049 chr3L - chr3L_21418646_21425954 chr3L_21418645_21418646;chr3L_21425954_21425955 chr3L_21417818_21418645;chr3L_21425955_21426213 0.00 0.00 0.00 3.12 NA NA 0.00 0.00 5.00 NA 0.00 4.44 0.00 9.09 0.00 3.23 0.00 0.00 3.45 4.08 0.00 NA 0.00 6.45 0.00 NA 4.76 NA NA 0.00 3.70 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 8.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 4.76 0.00 K cassette I_chrX_10148341_10149525,noncoding_22888,I_chrX_10152994_10153223 chrX - chrX_10149624_10152910 chrX_10149624_10151700;chrX_10152051_10152910 chrX_10151701_10152050 chrX_10149593_10149623;chrX_10152911_10152993 60.00 NA NA 71.43 60.00 NA 84.00 90.91 58.33 80.00 NA 100.00 NA NA 75.00 100.00 NA NA NA 66.67 NA 42.86 40.00 50.00 33.33 80.00 55.56 20.00 NA 37.50 100.00 NA 42.86 80.00 NA 63.16 37.50 NA NA 40.00 50.00 85.71 NA 66.67 25.00 NA NA 60.00 100.00 NA 50.00 NA NA NA NA NA 50.00 NA K jcn_only_AD ptr,I_chrX_2243281_2243359,I_chrX_2243281_2243373,I_chrX_2243647_2248739 chrX - chrX_2243281_2243374 chrX_2243281_2243359 chrX_2243181_2243280;chrX_2243375_2243459 3.45 11.54 0.00 4.76 NA 3.45 2.78 10.00 3.64 NA NA 0.00 NA NA 3.70 5.00 NA NA NA 3.12 NA 2.86 1.67 0.00 2.94 0.00 7.02 4.40 6.25 9.76 5.00 4.17 4.17 6.45 0.00 7.41 5.71 7.14 1.61 0.00 2.70 3.03 0.00 3.45 0.00 5.56 5.41 0.00 2.94 7.02 3.33 3.85 0.00 NA 0.00 NA NA 6.90 K cassette scrib,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22406745_22416162 chr3R_22406745_22415629;chr3R_22415781_22416162 chr3R_22415630_22415780 chr3R_22406645_22406744;chr3R_22416163_22416262 100.00 100.00 100.00 99.07 100.00 100.00 100.00 100.00 99.22 100.00 100.00 100.00 97.73 100.00 100.00 100.00 98.28 100.00 100.00 97.46 100.00 99.20 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.63 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 100.00 99.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 98.63 100.00 96.67 100.00 100.00 100.00 100.00 100.00 K intron_retention Rtnl1,I_chr2L_4994995_4995154,I_chr2L_4994995_5006383,RE_chr2L_4994997_5008180,I_chr2L_4999312_5000248,I_chr2L_4999386_4999670,I_chr2L_4999386_5000201,I_chr2L_5004757_5006383,I_chr2L_5004775_5006231,I_chr2L_5004775_5006381,I_chr2L_5004775_5006392,I_chr2L_5027222_5028118 chr2L - chr2L_4994995_5004171 chr2L_4994994_4994995;chr2L_5004171_5004172 chr2L_4994897_4994994;chr2L_5004172_5004207 20.00 25.00 4.76 20.00 18.52 19.35 35.00 31.03 26.00 NA 46.15 25.00 28.57 19.05 10.00 37.50 15.38 13.79 20.00 16.92 NA 23.81 NA NA NA 15.00 30.77 14.29 17.39 NA 19.05 6.67 21.05 19.35 NA NA 12.50 NA 41.67 23.08 NA 21.74 29.41 13.04 8.70 6.67 25.00 26.92 24.44 NA 35.71 NA 10.53 NA 22.73 NA NA 17.65 K intron_retention CG42574,I_chr3R_618802_618939,I_chr3R_621543_625413,I_chr3R_621546_625413 chr3R - chr3R_621543_622210 chr3R_621542_621543;chr3R_622210_622211 chr3R_621459_621542;chr3R_622211_622332 25.00 NA NA 8.70 NA NA 22.22 30.77 16.67 NA NA 34.62 NA NA NA 33.33 41.67 NA NA 14.29 NA 40.82 26.92 NA 14.29 NA NA 28.21 25.00 35.71 NA NA 14.29 NA NA 25.00 21.43 NA 11.11 23.81 NA 15.00 NA 31.25 NA NA NA 30.77 20.00 NA 26.67 NA NA NA NA NA NA NA K alternative_donor eIF3-S9,CG18432 chr2R + chr2R_13424059_13424200 chr2R_13424085_13424200 chr2R_13424201_13424516;chr2R_13423960_13424058 100.00 100.00 100.00 100.00 99.28 100.00 100.00 100.00 99.70 100.00 100.00 99.70 100.00 100.00 100.00 100.00 100.00 99.38 100.00 99.76 100.00 99.66 100.00 99.65 100.00 99.42 100.00 99.69 100.00 99.53 98.48 100.00 99.40 99.63 100.00 99.65 99.65 100.00 99.69 99.77 99.59 100.00 100.00 99.62 100.00 100.00 99.68 100.00 99.75 100.00 99.71 99.38 100.00 100.00 99.58 100.00 100.00 100.00 K jcn_only_AD CG31159 chr3R + chr3R_18440851_18440950 chr3R_18440899_18440950 chr3R_18440951_18441462;chr3R_18440681_18440850 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 K intron_retention I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17180812_17181479,RI_chr3R_17181280_17181474,I_chr3R_17181974_17182126,RI_chr3R_17182422_17182532,RI_chr3R_17183087_17183245,RI_chr3R_17183087_17183726,I_chr3R_17183481_17200781,I_chr3R_17183927_17184513,I_chr3R_17183927_17185306,RI_chr3R_17184319_17184513,I_chr3R_17184319_17185084,I_chr3R_17184319_17185284,noncoding_18168,RI_chr3R_17184792_17185306,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,RI_chr3R_17189607_17189988,I_chr3R_17190098_17190207,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17179457_17200781 chr3R_17179456_17179457;chr3R_17200781_17200782 chr3R_17179071_17179456;chr3R_17200782_17200881 17.16 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA 17.65 NA NA NA NA NA NA NA NA NA K intron_retention lds,I_chr3R_3748184_3748242 chr3R + chr3R_3748184_3748268 chr3R_3748183_3748184;chr3R_3748268_3748269 chr3R_3748084_3748183;chr3R_3748269_3748342 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 2.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 2.06 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 2.67 K intron_retention CG7185 chr3L - chr3L_8303956_8304081 chr3L_8303955_8303956;chr3L_8304081_8304082 chr3L_8303593_8303955;chr3L_8304082_8304326 100.00 100.00 100.00 99.42 100.00 98.68 99.38 100.00 99.67 100.00 100.00 99.48 100.00 100.00 100.00 99.36 100.00 100.00 100.00 99.62 100.00 99.24 100.00 100.00 100.00 98.82 98.71 95.58 98.99 99.23 98.95 99.11 100.00 99.49 100.00 100.00 100.00 100.00 100.00 99.56 97.79 99.60 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.59 99.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor obst-E,RI_chr2L_5764272_5764331 chr2L - chr2L_5763369_5765960 chr2L_5764272_5765960 chr2L_5765961_5766199;chr2L_5762554_5763368 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA K jcn_only_AA Pcf11,RI_chr2R_10753287_10754988 chr2R - chr2R_10753272_10754988;chr2R_10753557_10754988;chr2R_10753581_10754988;chr2R_10753239_10754988 chr2R_10753287_10754988 chr2R_10754989_10755088;chr2R_10753187_10753238 3.03 9.52 3.85 3.03 0.00 0.00 18.18 6.45 2.08 8.33 0.00 0.00 NA 0.00 5.00 NA 4.35 NA 6.67 1.75 NA 0.00 2.04 0.00 NA 5.00 2.70 2.70 4.17 NA 3.70 NA 3.57 0.00 NA NA 1.82 3.03 2.63 6.38 NA 4.08 NA 4.76 NA 12.50 0.00 3.70 0.00 NA 7.14 NA NA NA 0.00 NA NA NA K alternative_donor CG32532 chrX - chrX_19427304_19428011;chrX_19427304_19428023 chrX_19427304_19427668 chrX_19427087_19427303;chrX_19428024_19428129 45.00 NA NA 11.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.00 NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG18619,I_chr2L_10264634_10264770,RI_chr2L_10265562_10265628 chr2L + chr2L_10264886_10264946 chr2L_10264885_10264886;chr2L_10264946_10264947 chr2L_10264822_10264885;chr2L_10264947_10265012 2.70 5.00 6.25 0.00 0.00 0.00 4.65 5.88 0.00 0.00 0.00 0.00 0.00 0.00 2.38 3.28 0.00 0.00 3.64 3.03 0.00 10.53 5.88 4.17 0.00 3.51 3.51 0.00 0.00 5.26 0.00 3.77 2.70 3.17 0.00 12.00 4.35 6.25 0.00 0.88 5.88 1.52 0.00 2.94 0.00 5.05 2.90 5.26 3.57 4.88 0.00 0.00 0.00 7.32 0.00 3.39 3.64 0.00 K intron_retention I_chr2L_5050018_5050955,I_chr2L_5050249_5050657,eIF-3p40,Rpn11 chr2L - chr2L_5052315_5052654 chr2L_5052314_5052315;chr2L_5052654_5052655 chr2L_5051637_5052314;chr2L_5052655_5053168 0.00 0.00 0.00 0.39 0.00 0.46 0.00 0.00 0.13 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.08 0.10 0.00 0.00 0.63 0.55 0.00 0.00 0.00 0.39 0.00 0.00 0.29 0.11 0.10 0.26 0.00 0.17 0.00 0.27 0.00 0.00 0.00 0.00 0.08 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 K intron_retention CG2950,I_chr2L_4844647_4845086,I_chr2L_4844952_4845086 chr2L - chr2L_4844243_4844308 chr2L_4844242_4844243;chr2L_4844308_4844309 chr2L_4844169_4844242;chr2L_4844309_4844646 97.44 98.18 98.00 98.36 100.00 97.30 97.83 98.08 98.82 94.74 100.00 98.55 100.00 96.43 97.14 97.14 96.97 93.55 100.00 100.00 96.97 94.12 97.67 98.31 96.15 100.00 96.55 92.68 100.00 96.88 97.50 94.12 85.71 98.21 93.33 96.15 97.50 94.92 98.63 98.28 100.00 97.37 100.00 97.78 89.19 95.00 97.44 95.00 100.00 93.18 97.40 97.56 94.29 92.73 100.00 95.12 96.15 100.00 K alternative_donor CG4774,RI_chr3R_21512589_21512972 chr3R - chr3R_21512589_21512703 chr3R_21512589_21512667 chr3R_21512489_21512588;chr3R_21512704_21512736 13.56 9.52 12.50 12.77 5.56 13.33 18.42 7.25 14.58 7.69 NA 14.63 10.71 18.52 17.24 8.64 13.64 11.54 15.79 14.29 10.71 NA 12.20 19.35 9.52 12.82 18.92 20.00 19.23 13.04 9.43 9.09 16.67 13.56 9.38 15.00 21.05 18.18 7.50 15.00 25.93 11.48 11.11 26.32 17.24 7.84 9.09 10.71 16.92 14.29 16.67 16.67 16.67 4.76 13.64 10.81 15.38 13.04 K alternative_last_exon CG6151,RI_chr3L_15803949_15805547,I_chr3L_15806727_15808816 chr3L - chr3L_15804494_15806345;chr3L_15803949_15806345 chr3L_15805342_15806345,chr3L_15805998_15806345 chr3L_15804425_15804493;chr3L_15803213_15803948 chr3L_15805029_15805341 chr3L_15806346_15806453 4.12 4.12 4.17 3.07 1.47 3.66 2.24 2.78 4.74 4.35 17.86 1.79 2.27 3.41 3.26 10.32 4.29 4.88 2.86 4.69 13.70 9.64 6.25 3.64 4.35 1.23 6.90 13.33 6.49 5.26 2.68 2.47 8.42 3.87 4.88 18.67 3.92 4.30 4.27 4.70 2.86 3.21 2.70 3.49 4.08 2.88 4.90 5.15 4.12 3.96 3.45 3.33 8.33 4.55 2.52 4.81 3.42 4.14 K intron_retention CG14194 chrX + chrX_19088052_19088456 chrX_19088051_19088052;chrX_19088456_19088457 chrX_19087981_19088051;chrX_19088457_19089031 2.33 5.56 0.00 9.09 3.39 0.00 3.30 4.12 3.41 2.33 11.11 0.85 3.23 1.61 1.27 6.49 0.00 1.67 0.00 4.43 5.88 2.70 0.00 4.95 1.72 0.00 5.49 2.13 6.35 0.00 1.72 0.00 1.41 1.03 4.08 14.75 3.10 2.38 0.00 2.70 0.00 2.38 3.77 0.00 1.85 0.00 0.00 5.88 3.96 3.17 3.53 5.88 0.00 0.00 0.00 0.00 3.12 0.00 K intron_retention Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24347954_24348203 chr3R_24347953_24347954;chr3R_24348203_24348204 chr3R_24347537_24347953;chr3R_24348204_24348354 0.00 0.00 0.00 2.75 0.00 0.00 0.00 1.42 3.42 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 1.66 0.00 0.00 3.08 5.88 0.00 0.00 3.77 NA 0.00 5.56 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 3.77 4.17 0.00 2.96 0.00 2.00 0.00 0.00 0.00 0.00 1.65 0.00 2.13 0.00 0.00 5.00 0.00 2.13 0.00 0.00 K alternative_donor CG14057,EI_chr3L_17037760_17037808 chr3L - chr3L_17037760_17037812 chr3L_17037760_17037808 chr3L_17037660_17037759;chr3L_17037813_17037908 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 1.23 1.89 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.66 0.00 0.00 1.83 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_119555_119827 chr2L_119554_119555;chr2L_119827_119828 chr2L_119431_119554;chr2L_119828_120077 0.00 0.00 0.00 0.77 1.22 0.00 1.56 0.00 3.35 0.00 0.00 1.97 2.00 2.22 0.88 2.76 0.00 0.00 1.85 1.27 0.00 0.00 0.71 0.63 0.00 0.00 2.22 2.44 0.00 0.93 2.35 0.00 0.00 1.39 0.00 3.75 0.00 0.00 0.00 0.64 0.00 1.18 1.32 0.00 0.00 0.00 0.00 0.00 1.40 0.00 0.00 2.15 0.00 0.00 1.42 0.00 0.00 0.00 K jcn_only_AA CG31619 chr2L + chr2L_21711411_21712789 chr2L_21711411_21712768 chr2L_21711315_21711410;chr2L_21712790_21712966 99.02 99.02 100.00 97.24 97.80 96.74 100.00 98.64 96.49 97.03 NA 99.59 100.00 100.00 98.98 99.17 100.00 100.00 97.67 98.94 NA 97.09 99.39 98.52 100.00 98.04 98.96 100.00 97.37 99.07 96.77 100.00 99.21 97.16 100.00 100.00 98.44 97.37 98.73 98.77 100.00 98.02 98.77 99.50 98.53 98.21 100.00 100.00 99.04 97.87 100.00 100.00 99.00 100.00 100.00 98.72 100.00 100.00 K jcn_only_AA Adar,I_chrX_1668256_1682696,I_chrX_1674594_1674717 chrX + chrX_1673403_1674094 chrX_1673403_1673499 chrX_1673123_1673402 0.00 2.63 2.56 0.00 0.00 0.00 4.00 4.84 1.39 NA 0.00 0.00 3.12 0.00 0.00 1.75 0.00 3.85 0.00 1.64 0.00 0.00 0.00 0.00 0.00 2.86 2.50 NA NA NA 2.08 NA NA 0.00 0.00 NA 0.00 NA 0.00 7.41 NA 0.00 3.33 0.00 NA NA 0.00 NA 0.00 0.00 0.00 2.50 NA NA 0.00 0.00 0.00 NA K cassette CG17838,I_chr3R_16623576_16628011,I_chr3R_16625404_16631668 chr3R + chr3R_16624132_16631668;chr3R_16624132_16631671 chr3R_16624132_16628011;chr3R_16628274_16631671,chr3R_16628274_16631668 chr3R_16628012_16628273 chr3R_16624037_16624131;chr3R_16631672_16631768 30.00 25.71 26.67 41.07 22.22 22.50 26.92 16.39 29.23 51.43 33.33 31.34 21.43 25.00 27.03 26.19 26.09 27.03 26.92 23.68 40.74 51.72 25.30 32.00 32.43 27.78 25.00 45.83 34.21 35.14 24.24 31.25 36.92 25.86 33.33 29.63 41.43 34.04 28.36 36.17 40.00 25.33 23.08 33.33 69.23 25.00 30.00 47.22 34.55 33.33 22.45 26.47 45.45 31.58 25.00 42.86 50.00 58.62 K alternative_donor Mgat2,I_chr3R_25845406_25845472,I_chr3R_25845406_25846373 chr3R - chr3R_25845406_25845472;chr3R_25845406_25846373;chr3R_25845406_25847670 chr3R_25845406_25847371 chr3R_25845317_25845405;chr3R_25847671_25847898 88.24 88.24 94.44 82.61 83.33 86.67 83.33 82.35 92.31 80.00 88.89 79.17 87.50 84.62 81.82 88.24 87.50 91.67 93.75 82.76 90.00 63.64 91.67 95.45 84.62 85.71 81.25 80.00 78.26 88.24 89.47 100.00 89.29 90.48 92.31 85.71 88.24 84.62 90.00 92.86 83.33 89.29 90.91 90.48 88.89 94.44 92.31 86.21 88.46 91.67 86.96 91.67 100.00 92.31 84.21 84.62 80.00 92.86 K alternative_acceptor Syx7,I_chr3L_21439901_21439962 chr3L + chr3L_21439124_21439297 chr3L_21439124_21439260 chr3L_21439033_21439123;chr3L_21439298_21439475 0.68 0.00 2.41 0.00 0.00 0.00 5.71 0.79 1.38 0.00 0.00 1.28 2.78 0.00 0.00 0.00 0.00 0.00 1.03 0.46 0.00 3.51 0.87 0.98 3.57 3.49 0.00 2.22 4.35 0.00 1.01 1.27 1.47 0.68 2.47 10.00 0.00 0.00 0.00 1.87 9.30 1.47 0.00 0.00 0.00 1.27 0.00 3.12 0.79 1.18 1.06 0.00 0.00 0.00 0.98 0.00 0.00 0.00 K alternative_acceptor RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522912_523360;chrX_522932_523360 chrX_522949_523360 chrX_523361_523436;chrX_522849_522911 3.90 5.73 2.88 3.88 3.97 3.66 20.86 5.05 5.58 4.10 4.81 3.43 6.67 3.68 3.53 3.14 5.08 4.00 4.00 5.63 1.94 12.15 3.80 3.66 11.16 18.60 3.42 7.32 2.20 4.12 3.12 6.34 1.58 3.57 3.62 3.90 3.42 3.56 5.04 4.32 6.89 6.80 5.56 1.58 2.86 4.66 3.52 2.18 5.31 3.27 3.51 4.59 3.49 4.27 1.74 4.31 3.85 2.19 K cassette Mbs,I_chr3L_16045251_16046108,I_chr3L_16057100_16057329 chr3L + chr3L_16059210_16059712 chr3L_16059210_16059284;chr3L_16059414_16059712 chr3L_16059285_16059413 chr3L_16059161_16059209;chr3L_16059713_16059929 0.00 0.00 0.00 1.85 0.00 1.15 0.78 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 1.38 0.00 0.00 0.00 0.74 1.28 0.00 0.71 1.15 2.04 0.00 0.00 0.00 1.19 0.00 0.00 2.46 0.85 0.00 0.70 0.69 0.00 0.50 0.00 1.35 2.74 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 K intron_retention Elongin-C,I_chr2R_15332885_15332943,I_chr2R_15332885_15333223,I_chr2R_15332885_15333260,I_chr2R_15332885_15333452,I_chr2R_15333309_15333432,I_chr2R_15336252_15338966 chr2R - chr2R_15332885_15333432 chr2R_15332884_15332885;chr2R_15333432_15333433 chr2R_15332785_15332884;chr2R_15333433_15333532 1.22 1.00 1.40 0.34 1.45 0.00 0.77 1.24 1.09 1.87 2.00 1.18 0.63 1.20 0.90 1.95 1.41 1.06 0.99 1.22 2.74 2.20 1.88 0.80 1.41 1.01 1.69 1.27 1.74 1.82 0.90 1.64 0.79 1.54 1.16 1.26 1.65 3.35 1.03 0.80 1.43 1.13 0.70 0.89 1.75 0.92 0.85 1.01 1.90 1.24 1.74 0.00 0.58 1.38 1.75 1.15 1.22 0.79 K intron_retention CG4165,I_chrX_5317784_5317881,I_chrX_5321743_5321838 chrX + chrX_5317051_5317151 chrX_5317050_5317051;chrX_5317151_5317152 chrX_5316613_5317050;chrX_5317152_5317783 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG3967,RI_chr3L_9408567_9410728,RI_chr3L_9412100_9412179 chr3L - chr3L_9412100_9412194 chr3L_9412100_9412179 chr3L_9412000_9412099;chr3L_9412195_9412279 2.94 3.85 4.35 3.33 NA 5.00 0.00 NA 7.89 0.00 NA 5.41 NA 4.76 5.00 3.85 NA 0.00 NA 0.00 NA 4.17 2.04 2.44 0.00 NA 3.57 NA 11.43 4.17 3.45 0.00 0.00 2.94 4.17 0.00 2.13 0.00 0.00 2.38 2.86 0.00 NA 2.17 3.64 1.39 0.00 0.00 6.38 4.76 2.86 NA NA 6.45 0.00 3.23 4.35 2.99 K intron_retention TMS1 chr3L + chr3L_16407594_16407905 chr3L_16407593_16407594;chr3L_16407905_16407906 chr3L_16407384_16407593;chr3L_16407906_16408056 97.22 96.43 94.44 95.00 100.00 100.00 95.83 92.86 96.15 100.00 100.00 100.00 100.00 91.67 91.67 92.86 92.31 87.50 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 92.86 92.31 90.91 94.44 100.00 100.00 100.00 94.74 100.00 94.74 94.12 95.24 100.00 95.00 100.00 88.24 100.00 100.00 89.47 100.00 94.44 100.00 88.89 93.33 100.00 100.00 93.33 90.91 N jcn_only_AD CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806824_22807254;chr3R_22806425_22807254;chr3R_22806725_22807254 chr3R_22806454_22807254 chr3R_22807255_22807473;chr3R_22806325_22806424 0.00 0.00 0.00 0.00 0.00 0.00 3.83 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Roughened,I_chr3L_1861677_1861777,I_chr3L_1861677_1861929,I_chr3L_1861677_1862177 chr3L - chr3L_1861677_1861777;chr3L_1861677_1862060 chr3L_1861677_1862177 chr3L_1861577_1861676;chr3L_1862178_1862277 0.51 1.11 0.54 0.46 0.00 0.67 0.51 0.85 0.74 0.00 0.66 0.61 0.76 0.69 0.00 0.00 0.00 0.60 0.64 0.48 0.00 0.51 0.00 0.00 0.00 0.00 0.61 0.00 0.60 0.00 0.63 0.00 0.00 1.27 0.68 0.49 0.41 0.00 0.49 1.63 0.00 1.09 0.69 0.68 0.53 0.41 0.00 0.00 1.12 0.00 0.52 0.67 0.68 0.88 0.51 0.00 0.00 0.00 N jcn_only_AA CG8080,REI_chr2R_4979159_4979234,I_chr2R_4979276_4979936,CG13741 chr2R - chr2R_4979377_4979936;chr2R_4979276_4979936 chr2R_4979159_4979936 chr2R_4979937_4980036;chr2R_4979059_4979158 99.14 100.00 NA 100.00 95.00 96.00 NA 96.30 100.00 NA NA 97.30 NA 100.00 96.67 100.00 100.00 NA 96.30 97.67 NA NA 100.00 100.00 NA NA NA NA NA NA 92.31 NA 100.00 97.37 NA NA 100.00 92.59 NA 97.44 NA 95.83 92.00 94.29 NA 100.00 NA 100.00 98.28 100.00 94.44 100.00 NA NA 97.37 100.00 100.00 100.00 K intron_retention CG4078,I_chrX_5644813_5644881,I_chrX_5645012_5645067,F_chrX_5650884_5651894 chrX + chrX_5644638_5644881 chrX_5644637_5644638;chrX_5644881_5644882 chrX_5644495_5644637;chrX_5644882_5644981 35.71 NA 33.33 60.00 NA NA 62.50 47.06 34.62 NA NA 33.33 NA 41.67 30.77 58.33 NA NA 41.67 35.71 NA NA 28.57 NA NA 40.00 53.85 NA NA NA 57.14 NA NA 52.38 NA NA NA NA 20.00 35.71 NA 33.33 NA 45.45 NA NA NA NA 47.62 25.00 20.00 NA 35.71 33.33 28.57 22.22 NA NA K jcn_only_AD CG3408,I_chr3L_9501587_9501663,RI_chr3L_9501725_9502450,I_chr3L_9504402_9504516 chr3L - chr3L_9501725_9502450 chr3L_9501725_9502438 chr3L_9501665_9501724;chr3L_9502451_9502550 100.00 NA 100.00 100.00 NA NA 95.00 100.00 100.00 NA NA 96.97 NA 100.00 NA 100.00 NA NA NA 100.00 NA NA 86.36 NA NA NA NA NA NA NA 96.15 100.00 100.00 96.88 95.24 NA NA NA 100.00 97.56 96.00 100.00 100.00 NA 100.00 100.00 NA 97.83 93.33 NA 95.00 NA NA NA NA 100.00 NA 96.43 N intron_retention CG16971,CG33229,I_chr3L_225856_225909,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_224184_225725 chr3L_224183_224184;chr3L_225725_225726 chr3L_224174_224183;chr3L_225726_225849 100.00 100.00 100.00 100.00 100.00 100.00 80.49 100.00 84.42 100.00 100.00 78.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 77.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 77.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 K jcn_only_AD AnnIX chr3R + chr3R_16891137_16893167;chr3R_16891124_16893167;chr3R_16891033_16893167 chr3R_16891008_16893167 chr3R_16893168_16893221;chr3R_16890951_16891007 34.64 33.85 53.87 59.63 34.29 52.67 32.00 57.85 36.25 16.67 35.41 39.04 23.58 44.98 59.66 39.51 50.57 46.54 52.96 51.59 33.73 19.15 6.48 2.15 6.00 54.88 8.73 10.20 29.17 29.82 53.52 48.78 62.90 58.70 13.93 14.77 5.26 5.97 6.43 50.00 52.83 53.50 56.25 30.77 66.29 34.64 5.61 61.43 61.77 3.49 7.48 9.86 15.25 4.72 57.39 6.06 4.71 66.22 K intron_retention l(2)05714,RI_chr2L_4970785_4971075,CRE_chr2L_4970785_4971082,I_chr2L_4970785_4973718,RI_chr2L_4971343_4973718,CG8892 chr2L - chr2L_4970785_4971086 chr2L_4970784_4970785;chr2L_4971086_4971087 chr2L_4970685_4970784;chr2L_4971087_4971175 0.00 8.33 0.00 6.25 0.00 NA 0.00 6.06 0.00 NA 0.00 0.00 0.00 4.35 6.90 3.03 NA 8.70 0.00 6.25 5.88 0.00 0.00 6.45 0.00 0.00 0.00 NA NA 4.55 0.00 0.00 2.17 6.90 0.00 4.17 0.00 8.70 0.00 9.09 2.78 2.56 NA 0.00 0.00 8.33 0.00 0.00 6.25 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 9.09 K intron_retention I_chr3L_1494947_1496080,pUf68,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1501398_1501798 chr3L_1501397_1501398;chr3L_1501798_1501799 chr3L_1501351_1501397;chr3L_1501799_1501892 38.54 NA NA NA NA NA NA NA 72.73 NA NA 33.33 26.67 NA 43.75 NA NA NA 60.00 50.00 NA NA NA NA NA NA 14.29 NA NA NA 28.57 NA NA 63.64 NA NA NA NA NA 26.32 NA 46.67 NA 20.00 NA NA NA NA 56.25 NA 31.82 NA NA NA NA NA NA NA K intron_retention vsg,I_chr3L_9707724_9708265 chr3L + chr3L_9707724_9708843 chr3L_9707723_9707724;chr3L_9708843_9708844 chr3L_9707624_9707723;chr3L_9708844_9710799 0.00 0.28 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.21 0.00 0.00 0.00 0.13 0.00 0.34 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.72 0.33 0.00 0.00 0.00 0.15 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention sd,noncoding_23930,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15706564_15707768 chrX_15706563_15706564;chrX_15707768_15707769 chrX_15706468_15706563;chrX_15707769_15708328 90.91 100.00 100.00 92.86 100.00 88.89 100.00 75.00 91.67 NA 90.91 85.00 100.00 91.67 76.47 100.00 88.89 90.91 90.91 84.21 92.31 NA 88.89 72.73 80.00 NA 100.00 NA 100.00 93.75 100.00 NA 90.00 94.12 NA 91.67 77.78 NA NA 80.00 NA 83.33 90.91 NA NA NA NA 92.31 78.95 NA 90.00 NA NA NA 100.00 NA NA NA K alternative_acceptor CG13822,RI_chr3R_19503360_19503522 chr3R + chr3R_19503360_19503577 chr3R_19503360_19503522 chr3R_19503260_19503359;chr3R_19503578_19503622 2.78 1.45 1.27 4.29 0.00 0.00 2.60 1.01 3.31 6.90 0.00 0.97 2.63 0.00 0.00 1.19 0.00 1.56 1.59 0.68 0.00 3.85 6.00 2.13 2.78 2.27 7.89 4.17 4.65 2.56 18.92 5.71 4.76 2.91 2.86 3.92 2.44 4.35 2.82 4.00 13.79 2.46 0.00 4.26 6.25 14.00 3.95 8.16 2.01 3.85 3.30 8.82 0.78 5.00 0.00 8.00 0.40 1.75 K jcn_only_AD eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341925_20342041;chr3L_20341636_20342041;chr3L_20341509_20342041;chr3L_20341865_20342041;chr3L_20341486_20342041;chr3L_20341522_20342041;chr3L_20341530_20342041;chr3L_20341629_20342041;chr3L_20341598_20342041;chr3L_20341759_20342041 chr3L_20341751_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 10.00 6.06 10.00 3.67 8.33 9.30 7.41 4.92 4.93 17.39 2.33 9.33 11.90 10.53 2.86 3.85 4.62 7.84 4.76 8.66 5.36 13.04 18.42 10.20 19.51 10.00 16.13 11.11 16.13 14.81 9.20 13.64 24.39 4.58 NA 20.69 16.33 13.89 17.24 5.93 13.64 2.58 7.02 8.16 8.11 22.22 17.95 25.00 4.90 23.40 29.03 12.50 30.00 NA 7.14 6.67 13.85 16.05 K intron_retention ash2 chr3R + chr3R_20478762_20478819 chr3R_20478761_20478762;chr3R_20478819_20478820 chr3R_20478504_20478761;chr3R_20478820_20479075 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.98 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG18766,I_chr3R_23069667_23070256,I_chr3R_23069667_23070318,RI_chr3R_23069667_23070361,I_chr3R_23069667_23070365 chr3R - chr3R_23069667_23070738;chr3R_23069667_23070732 chr3R_23069667_23070911 chr3R_23069567_23069666;chr3R_23070912_23070951 10.81 2.78 16.28 17.33 13.79 21.88 15.62 10.81 18.28 6.67 15.62 17.72 27.78 14.29 16.67 13.64 10.53 11.43 7.50 10.64 30.77 24.14 7.55 11.76 3.57 11.54 0.00 5.88 18.18 6.67 10.87 20.69 10.81 13.64 6.67 0.00 10.81 3.45 3.03 19.12 5.56 21.62 16.22 11.76 18.18 1.85 10.53 0.00 15.00 7.69 6.38 6.45 8.00 0.00 18.00 7.32 7.32 4.88 K intron_retention CG3500,RI_chr2R_19244231_19244378 chr2R - chr2R_19244681_19244741 chr2R_19244680_19244681;chr2R_19244741_19244742 chr2R_19244379_19244680;chr2R_19244742_19245088 12.07 11.90 7.58 32.26 6.67 7.27 13.33 12.00 7.32 17.65 23.81 8.64 0.00 6.25 5.45 0.00 15.00 7.55 5.71 7.43 15.38 21.62 19.72 15.52 15.56 13.95 20.69 20.00 32.43 21.95 25.58 11.11 11.84 8.00 10.87 33.33 32.14 25.93 12.07 6.57 28.57 13.51 5.00 16.33 6.80 12.33 11.43 9.76 7.41 17.24 21.57 15.38 6.94 8.57 8.16 14.81 14.67 4.21 K alternative_donor CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27044867;chr3R_27044771_27045257;chr3R_27044771_27045132;chr3R_27044771_27045027;chr3R_27044771_27045110;chr3R_27044771_27044831;chr3R_27044771_27044990;chr3R_27044771_27044895 chr3R_27044771_27045188 chr3R_27044671_27044770;chr3R_27045258_27045273 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.13 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.70 1.01 0.00 0.00 0.26 0.00 0.00 0.00 2.38 0.00 2.86 0.00 0.00 0.00 0.00 0.96 0.24 0.00 3.85 0.00 0.10 4.00 0.00 0.00 0.45 0.00 0.00 2.78 0.00 0.17 K alternative_donor nrv2,I_chr2L_6791842_6794492,I_chr2L_6793397_6794492,I_chr2L_6793405_6793916,I_chr2L_6793405_6794499,I_chr2L_6793684_6794492 chr2L - chr2L_6793405_6794492;chr2L_6793405_6794316;chr2L_6793405_6794551 chr2L_6793405_6794328 chr2L_6793305_6793404;chr2L_6794552_6794592 0.00 0.00 0.00 2.86 0.00 0.00 4.55 2.78 4.35 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 3.45 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.03 1.37 8.11 0.00 0.00 0.00 0.00 0.00 1.41 2.94 4.17 0.00 0.00 0.00 2.86 0.00 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.54 K intron_retention CG9674,I_chr3L_16785451_16785540,I_chr3L_16785706_16785748,I_chr3L_16793055_16800660 chr3L - chr3L_16785451_16785540 chr3L_16785450_16785451;chr3L_16785540_16785541 chr3L_16785351_16785450;chr3L_16785541_16785640 82.57 80.00 NA NA NA NA 90.00 90.91 83.33 NA NA 75.00 87.50 90.91 90.00 90.91 81.82 NA 87.50 84.21 NA 69.23 76.92 90.00 90.00 NA 90.00 NA 60.00 75.00 90.00 NA 77.27 88.89 NA 69.23 85.71 70.00 68.75 63.64 69.23 76.92 NA 84.62 NA 72.73 77.78 80.00 78.57 88.89 92.31 NA NA NA 88.89 80.00 NA NA K jcn_only_AA mub,RI_chr3L_21901021_21901163,I_chr3L_21908756_21909179 chr3L + chr3L_21914088_21914153;chr3L_21914088_21914156;chr3L_21914088_21914141 chr3L_21914088_21914192 chr3L_21914067_21914087;chr3L_21914193_21914427 8.00 NA NA NA NA NA NA NA 3.45 NA NA NA NA NA NA NA NA NA NA 11.54 NA 3.85 5.41 13.64 NA NA NA NA NA 5.00 NA NA 16.67 NA NA NA 2.63 3.70 3.85 8.00 NA 16.67 NA 18.18 NA NA NA 14.29 NA NA 12.50 NA NA NA NA NA NA NA K jcn_only_AD CG6689,RI_chr3R_7044164_7044221 chr3R - chr3R_7044164_7044234 chr3R_7044164_7044221 chr3R_7044064_7044163;chr3R_7044235_7044321 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 1.92 NA 0.00 4.44 0.00 4.17 0.00 NA 0.00 NA 0.00 2.13 NA 4.26 0.00 0.00 0.00 3.70 0.00 3.85 3.70 0.00 6.45 0.00 3.23 4.35 0.00 0.00 1.37 0.00 0.00 0.00 0.00 3.23 3.70 0.00 0.00 7.32 1.79 8.70 0.00 0.00 2.44 NA 2.56 0.00 7.69 0.00 1.22 5.88 K alternative_last_exon Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5006553_5007257;chr2R_5006553_5008598,chr2R_5006553_5008568,chr2R_5006553_5008282,chr2R_5006553_5007804 chr2R_5006553_5009240 chr2R_5007258_5007336;chr2R_5008599_5008637 chr2R_5009241_5009953 chr2R_5006405_5006552 66.67 68.97 63.64 86.21 82.35 72.22 63.64 78.79 66.67 58.82 50.00 32.20 84.21 84.21 66.67 77.42 70.59 72.73 76.00 67.35 64.29 58.82 56.41 54.84 40.00 80.00 65.22 37.50 42.11 59.09 75.00 59.09 44.00 71.43 65.38 42.86 56.10 44.12 54.55 57.89 66.67 70.73 78.95 54.17 42.42 77.42 58.62 61.90 74.36 72.22 62.86 56.52 68.42 66.67 72.00 66.67 67.57 82.14 K intron_retention CG17184 chr3R - chr3R_7060167_7060229 chr3R_7060166_7060167;chr3R_7060229_7060230 chr3R_7059644_7060166;chr3R_7060230_7060697 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 2.30 0.00 2.08 0.00 0.00 2.33 0.00 0.00 5.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 3.92 0.00 0.00 0.00 2.20 1.08 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 K intron_retention CG9773 chr3R - chr3R_4501655_4501909 chr3R_4501654_4501655;chr3R_4501909_4501910 chr3R_4501295_4501654;chr3R_4501910_4502359 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 1.03 0.00 K jcn_only_AD AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9004021_9004854;chrX_9003790_9004854;chrX_9003918_9004854 chrX_9003728_9004854 chrX_9004855_9004862;chrX_9003721_9003727 61.54 NA NA 57.14 NA NA 50.00 66.67 61.54 NA NA 61.54 NA 57.14 55.00 65.12 NA NA 46.43 66.67 NA NA 85.71 NA NA 45.83 NA NA NA NA 61.76 NA NA 52.94 NA NA NA NA NA NA NA 56.25 NA NA NA NA NA NA 68.75 NA NA NA NA NA 64.71 NA NA NA K alternative_acceptor vimar,CG30156 chr2R - chr2R_2866103_2872916 chr2R_2866106_2872916 chr2R_2872917_2873214;chr2R_2865197_2866102 6.67 5.56 7.41 8.77 3.23 3.33 6.12 6.56 8.82 6.67 6.90 8.51 3.57 3.85 10.71 2.38 4.55 6.25 11.11 12.50 4.76 6.67 9.09 9.09 NA 3.33 6.67 11.11 2.33 7.41 7.50 15.38 5.56 7.27 6.67 2.94 2.70 13.04 6.67 6.49 9.09 5.56 3.85 4.76 8.00 6.67 5.00 5.00 6.38 14.29 13.79 8.00 7.14 NA 4.44 0.00 11.11 6.67 K intron_retention elm,I_chr3R_1479477_1479575 chr3R - chr3R_1479477_1480377 chr3R_1479476_1479477;chr3R_1480377_1480378 chr3R_1479377_1479476;chr3R_1480378_1480718 0.00 0.00 0.00 2.13 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6455,I_chr3R_17846331_17846423 chr3R - chr3R_17846331_17846546 chr3R_17846330_17846331;chr3R_17846546_17846547 chr3R_17846231_17846330;chr3R_17846547_17847242 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive Vha100-1,I_chr3R_24958227_24960770,RI_chr3R_24959152_24959582,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24958227_24959582,chr3R_24959684_24960770 chr3R_24958227_24958993,chr3R_24959152_24960770 chr3R_24959583_24959683 chr3R_24958994_24959151 chr3R_24958127_24958226;chr3R_24960771_24960870 70.49 63.29 75.00 88.14 53.33 63.04 75.36 70.49 60.36 72.92 67.57 81.97 86.36 73.68 70.00 77.78 60.53 61.54 89.74 50.00 67.31 64.29 68.03 66.67 80.25 78.43 76.29 84.13 82.14 73.26 70.91 79.17 71.03 56.58 72.22 73.44 67.42 67.03 68.91 70.43 82.93 66.91 68.29 77.63 62.12 73.17 66.22 81.33 66.99 77.78 69.72 72.88 73.77 65.71 67.80 64.06 70.24 78.67 K alternative_donor Rox8,I_chr3R_19872211_19872659,I_chr3R_19872214_19872630,I_chr3R_19872214_19872636,I_chr3R_19872214_19872838,I_chr3R_19876189_19876240 chr3R - chr3R_19872214_19873220;chr3R_19872214_19873214 chr3R_19872214_19873136 chr3R_19872114_19872213;chr3R_19873221_19873284 60.00 NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA 80.00 NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 50.00 NA NA NA NA NA NA NA NA NA K alternative_donor tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5960163;chr3R_5959310_5960101;chr3R_5959310_5960041;chr3R_5959310_5959789;chr3R_5959310_5960049;chr3R_5959310_5960182;chr3R_5959310_5960158;chr3R_5959310_5959679 chr3R_5959310_5960026 chr3R_5958937_5959309;chr3R_5960183_5960224 47.62 57.14 40.00 48.00 50.00 60.00 43.48 45.45 37.93 40.00 42.86 50.00 26.67 41.67 42.86 43.33 50.00 40.00 41.18 52.17 50.00 37.50 41.67 37.50 50.00 55.56 40.00 37.50 55.56 55.56 53.85 50.00 58.33 40.74 37.50 44.44 25.00 75.00 33.33 55.56 66.67 50.00 45.45 44.44 66.67 62.50 66.67 47.62 31.25 60.00 40.00 42.86 50.00 66.67 43.75 60.00 66.67 53.85 K intron_retention lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,RI_chr2L_22823579_22823640,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22820498_22832085 chr2L_22820497_22820498;chr2L_22832085_22832086 chr2L_22820398_22820497;chr2L_22832086_22832154 21.43 NA NA 5.45 NA NA NA 28.00 NA NA NA 10.53 NA NA NA 20.00 NA NA NA 30.77 NA NA NA NA NA 0.00 NA NA 21.43 NA NA NA NA 20.00 NA NA NA NA NA NA NA 28.57 NA NA NA NA NA 33.33 21.43 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG31169,I_chr3R_18209085_18209133 chr3R + chr3R_18209081_18209172 chr3R_18209081_18209133 chr3R_18209073_18209080;chr3R_18209173_18209201 62.13 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 71.88 NA NA NA NA NA NA NA NA 52.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,I_chr2R_15350149_15350210,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350905_15351814;chr2R_15350285_15351814;chr2R_15350437_15351814 chr2R_15350149_15351814 chr2R_15351815_15351914;chr2R_15350068_15350148 14.29 0.00 12.50 25.00 0.00 10.00 11.11 14.29 4.55 0.00 0.00 7.14 16.67 10.00 25.00 10.00 11.11 16.67 20.00 9.52 28.57 6.67 16.67 18.18 40.00 27.27 0.00 20.00 0.00 9.09 28.57 0.00 14.29 22.73 14.29 14.29 0.00 0.00 20.00 14.29 33.33 17.65 10.00 33.33 NA 0.00 20.00 37.50 14.81 16.67 7.14 16.67 20.00 50.00 14.29 33.33 14.29 20.00 K intron_retention MED31,CG18271,I_chr3R_468381_468483,CE_chr3R_468381_468504 chr3R + chr3R_468151_468290 chr3R_468150_468151;chr3R_468290_468291 chr3R_468011_468150;chr3R_468291_468380 3.61 5.97 4.40 5.10 0.00 1.69 5.00 4.67 3.03 0.00 4.65 3.54 6.35 3.17 8.64 4.35 2.38 5.80 5.48 3.48 0.00 0.00 4.41 4.76 1.61 4.88 4.88 8.00 0.00 1.92 3.03 2.00 4.44 5.10 4.17 1.92 3.61 1.59 2.22 2.17 4.17 4.29 7.55 3.28 1.82 3.53 2.60 4.26 6.72 3.16 4.35 7.69 0.00 3.57 6.41 1.19 5.66 3.03 K intron_retention CG9063 chr3L - chr3L_22255797_22255853 chr3L_22255796_22255797;chr3L_22255853_22255854 chr3L_22253724_22255796;chr3L_22255854_22256037 6.25 0.00 0.00 20.59 NA NA 8.33 14.29 5.71 NA 11.76 4.76 5.56 5.56 15.38 26.32 NA NA 8.70 8.33 23.53 0.00 13.95 0.00 10.53 23.08 26.32 32.00 21.88 0.00 5.56 0.00 10.26 9.09 0.00 10.71 0.00 0.00 3.57 5.17 0.00 13.16 0.00 7.41 0.00 0.00 4.76 7.32 5.00 NA 6.25 4.76 NA NA 10.53 NA NA 13.33 K intron_retention lolal,I_chr2R_14043671_14043736,I_chr2R_14043671_14043740,I_chr2R_14043671_14043901,RI_chr2R_14043671_14044082,I_chr2R_14043671_14044191,I_chr2R_14043671_14044461,I_chr2R_14043671_14045289,I_chr2R_14043671_14045344 chr2R - chr2R_14043671_14043740 chr2R_14043670_14043671;chr2R_14043740_14043741 chr2R_14043571_14043670;chr2R_14043741_14043767 87.50 NA NA 81.82 88.89 NA NA 100.00 85.71 NA NA 78.57 NA 90.00 77.78 91.67 NA NA 100.00 85.71 NA 80.00 NA NA NA NA NA NA 88.89 NA NA NA NA 93.33 NA NA NA NA NA 75.00 NA 82.35 NA NA NA NA 87.50 NA 92.31 NA NA NA NA NA 63.64 88.89 NA NA K intron_retention Arf79F,I_chr3L_22863166_22863946,I_chr3L_22863166_22864419,RI_chr3L_22863251_22863389,RI_chr3L_22863251_22863952,I_chr3L_22863251_22864009,I_chr3L_22863251_22864188,I_chr3L_22863251_22864501,I_chr3L_22863251_22864629,RI_chr3L_22863251_22864763,I_chr3L_22863251_22864866,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22863251_22864559 chr3L_22863250_22863251;chr3L_22864559_22864560 chr3L_22863151_22863250;chr3L_22864560_22864601 3.27 3.25 3.55 3.17 2.56 2.13 3.13 4.38 2.38 2.34 3.50 4.48 3.41 2.61 5.62 3.39 5.23 3.07 4.66 3.18 2.48 3.54 3.72 3.27 1.31 4.05 3.87 6.09 4.88 2.78 3.21 1.96 3.00 3.85 2.19 5.26 4.15 4.17 2.70 4.33 2.16 3.19 4.00 4.50 2.98 2.61 5.00 2.72 2.85 2.35 4.19 3.82 4.62 2.38 3.39 3.53 2.56 1.72 K alternative_donor l(2)k01209,I_chr2R_13308079_13310771,I_chr2R_13309452_13310771,RI_chr2R_13310877_13311160 chr2R + chr2R_13309417_13311160;chr2R_13309452_13311160;chr2R_13308486_13311160 chr2R_13308079_13311160 chr2R_13311161_13311260;chr2R_13307979_13308078 55.84 58.46 52.63 50.72 41.67 68.00 48.28 62.16 53.15 55.26 60.98 59.80 48.57 50.00 56.36 57.32 54.05 59.57 51.02 55.12 60.87 55.13 59.32 52.33 58.82 43.48 55.10 67.74 44.00 60.53 43.10 57.69 66.97 51.81 60.61 55.84 54.35 62.50 56.25 57.00 71.05 52.13 51.43 49.44 53.62 57.33 64.41 43.66 53.76 53.62 69.23 50.98 60.00 58.82 52.63 63.64 60.29 56.94 K intron_retention CG5118 chr2L - chr2L_1170957_1171029 chr2L_1170956_1170957;chr2L_1171029_1171030 chr2L_1170752_1170956;chr2L_1171030_1171643 4.00 4.84 9.52 7.69 4.88 4.35 2.38 9.30 2.70 0.00 4.17 6.35 11.54 4.76 14.00 5.00 2.94 4.00 0.00 12.24 4.00 10.81 0.00 0.00 2.00 2.70 0.00 4.88 5.56 0.00 15.38 4.17 1.47 9.84 1.79 6.06 4.00 0.00 3.33 5.63 0.00 2.63 0.00 8.89 5.36 3.85 2.30 2.50 6.06 3.03 0.00 2.13 2.04 0.00 9.09 4.76 1.00 1.27 K intron_retention RhoGAP15B chrX + chrX_16843611_16845017 chrX_16843610_16843611;chrX_16845017_16845018 chrX_16842887_16843610;chrX_16845018_16847301 56.52 NA 63.64 83.33 NA 45.45 30.77 85.71 56.52 NA NA 52.63 NA NA 45.45 66.67 NA 60.00 70.00 61.11 NA 25.49 45.45 NA NA NA 36.36 NA 25.00 NA NA NA 41.67 66.67 NA NA 50.00 NA NA 58.33 NA 66.67 NA 60.00 NA NA NA 44.44 72.73 NA NA NA NA NA 55.56 NA NA NA K intron_retention CG3632,RI_chrX_16195880_16196242 chrX + chrX_16190824_16191693 chrX_16190823_16190824;chrX_16191693_16191694 chrX_16190763_16190823;chrX_16191694_16191751 54.55 60.00 47.06 33.33 NA NA 68.00 50.00 59.46 NA NA 46.43 57.14 NA 33.33 48.48 62.50 NA 50.00 57.14 NA NA 31.25 54.55 NA 45.45 57.14 60.00 54.55 NA 42.86 NA NA 52.00 63.64 NA 44.44 NA 63.64 70.00 NA 45.16 NA 63.64 NA 70.00 NA NA 51.72 NA 60.00 50.00 NA NA 25.00 NA 58.33 NA N jcn_only_AA cbs,I_chr2R_9340512_9340593 chr2R + chr2R_9339532_9339826 chr2R_9339532_9339794 chr2R_9339433_9339531;chr2R_9339827_9340240 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28.57 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 24.24 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 K intron_retention mth chr3L - chr3L_344302_344366 chr3L_344301_344302;chr3L_344366_344367 chr3L_344107_344301;chr3L_344367_344538 1.94 4.44 1.67 6.56 2.56 0.00 2.27 2.26 1.94 0.00 0.00 3.19 0.00 2.44 6.06 4.35 2.82 0.00 2.78 3.92 0.00 0.00 6.98 2.13 6.67 0.00 5.00 5.13 NA 5.56 1.56 0.00 8.70 1.64 0.00 3.57 3.23 0.00 0.00 0.00 0.00 4.92 0.00 0.00 0.00 0.00 4.17 0.00 3.06 7.32 2.04 2.70 NA 0.00 1.35 0.00 1.85 0.00 K intron_retention Abi,RI_chr3R_9946195_9946332 chr3R - chr3R_9946345_9946416 chr3R_9946344_9946345;chr3R_9946416_9946417 chr3R_9946333_9946344;chr3R_9946417_9946432 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Jhebp29,RI_chr2R_20857941_20857992,RI_chr2R_20857941_20858127 chr2R + chr2R_20857941_20857994 chr2R_20857940_20857941;chr2R_20857994_20857995 chr2R_20857841_20857940;chr2R_20857995_20858071 100.00 100.00 100.00 100.00 98.25 98.39 100.00 100.00 99.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.21 100.00 94.12 100.00 98.73 100.00 100.00 98.61 100.00 96.67 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.70 100.00 100.00 100.00 98.41 98.28 100.00 100.00 97.56 100.00 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 100.00 K cassette Mitf,I_chr4_1225009_1225220,I_chr4_1225890_1225947 chr4 + chr4_1224415_1225216 chr4_1224415_1224987;chr4_1225009_1225216 chr4_1224988_1225008 chr4_1224159_1224414;chr4_1225217_1225376 18.99 14.29 38.46 45.45 18.75 NA 6.67 22.73 17.50 NA 7.69 22.22 5.26 26.67 33.33 20.00 14.29 27.27 15.79 19.23 NA NA NA NA NA NA NA NA NA NA 35.71 NA NA 21.43 NA NA NA NA NA 12.50 NA 18.52 15.38 NA NA NA NA NA 23.81 NA NA NA NA NA 15.79 NA NA NA K alternative_donor Rpb11,I_chr2L_17410178_17410250,I_chr2L_17410178_17410317 chr2L - chr2L_17410178_17410317 chr2L_17410178_17410251 chr2L_17410088_17410177;chr2L_17410318_17410350 100.00 98.63 98.46 100.00 100.00 100.00 100.00 100.00 99.34 97.06 100.00 98.31 100.00 100.00 100.00 99.31 98.39 100.00 98.91 100.00 100.00 100.00 100.00 98.75 95.12 98.61 98.39 98.04 100.00 100.00 100.00 98.44 100.00 99.17 100.00 98.11 98.48 97.87 100.00 98.85 98.08 100.00 96.88 100.00 98.44 99.05 100.00 98.48 100.00 100.00 100.00 98.18 100.00 100.00 100.00 99.06 98.68 99.24 K alternative_acceptor CG14411 chrX + chrX_14726994_14727180 chrX_14726994_14727176 chrX_14726671_14726993;chrX_14727181_14727210 98.39 100.00 100.00 96.77 95.45 100.00 97.06 97.44 97.87 100.00 95.65 100.00 95.24 96.30 100.00 95.83 94.74 100.00 100.00 97.67 100.00 97.56 100.00 98.39 100.00 100.00 96.97 96.67 98.31 97.62 100.00 95.65 98.46 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 98.28 100.00 96.55 98.21 100.00 97.30 98.39 97.83 98.28 98.00 96.55 100.00 100.00 95.00 100.00 100.00 98.21 K alternative_donor CG41378,I_chr2RHet_1545717_1621473,I_chr2RHet_1545717_1621569,I_chr2RHet_1606049_1607768,RI_chr2RHet_1606049_1621284,noncoding_9480 chr2RHet - chr2RHet_1606049_1621636;chr2RHet_1606049_1621569 chr2RHet_1606049_1621473 chr2RHet_1605949_1606048;chr2RHet_1621637_1621662 97.44 94.12 100.00 100.00 100.00 100.00 93.33 97.06 94.87 NA 100.00 97.50 92.86 94.74 93.33 100.00 100.00 90.91 89.47 87.50 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 88.89 100.00 85.71 87.50 93.75 100.00 100.00 100.00 100.00 90.91 92.86 88.89 96.55 100.00 92.86 77.78 93.75 100.00 91.67 97.37 100.00 100.00 100.00 100.00 87.50 94.44 100.00 93.75 85.71 K intron_retention Atg8a,I_chrX_10659836_10661185 chrX - chrX_10659569_10659637 chrX_10659568_10659569;chrX_10659637_10659638 chrX_10658894_10659568;chrX_10659638_10659835 0.00 0.83 0.00 0.79 0.00 0.00 0.23 0.26 0.36 0.00 0.37 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.36 0.75 2.30 1.10 0.00 0.00 0.00 0.00 0.30 0.00 0.31 0.43 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.45 0.52 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.77 0.00 K alternative_donor Dip-B chr3R + chr3R_9609979_9610038 chr3R_9609982_9610038 chr3R_9610039_9611387;chr3R_9609919_9609978 100.00 100.00 98.72 100.00 98.41 100.00 98.97 100.00 99.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.41 98.53 100.00 98.15 100.00 100.00 100.00 100.00 100.00 98.85 98.99 100.00 98.82 98.91 100.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 98.51 98.47 100.00 100.00 97.83 99.05 100.00 100.00 99.21 100.00 100.00 100.00 100.00 100.00 100.00 98.73 100.00 100.00 K alternative_acceptor Sp7 chr3R + chr3R_3588116_3588182 chr3R_3588116_3588178 chr3R_3587729_3588115;chr3R_3588183_3588287 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 K intron_retention TSG101 chr3L + chr3L_16836334_16836396 chr3L_16836333_16836334;chr3L_16836396_16836397 chr3L_16836327_16836333;chr3L_16836397_16836440 99.57 100.00 99.19 99.55 98.99 100.00 99.40 99.46 100.00 98.68 100.00 99.45 100.00 100.00 99.24 100.00 100.00 100.00 99.15 99.58 99.01 98.10 100.00 100.00 100.00 100.00 99.39 94.12 100.00 99.12 99.27 100.00 99.25 98.86 99.04 100.00 99.45 100.00 99.46 99.57 100.00 100.00 100.00 99.41 99.13 100.00 99.43 98.89 99.42 99.48 100.00 100.00 100.00 99.28 100.00 99.37 100.00 100.00 N jcn_only_AD CG32529 chrX + chrX_19795641_19795900;chrX_19795687_19795900 chrX_19795522_19795900 chrX_19795901_19798251;chrX_19794649_19795521 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 79.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Sec61beta,I_chr2R_10506408_10506473 chr2R + chr2R_10506408_10506463 chr2R_10506407_10506408;chr2R_10506463_10506464 chr2R_10506341_10506407;chr2R_10506464_10506539 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14184,I_chr3L_20021160_20021210,I_chr3L_20021910_20021979 chr3L - chr3L_20021160_20021214 chr3L_20021159_20021160;chr3L_20021214_20021215 chr3L_20021060_20021159;chr3L_20021215_20021285 0.00 2.56 0.00 4.00 0.00 0.00 0.00 6.90 2.70 0.00 9.52 5.71 0.00 2.44 0.00 0.00 0.00 0.00 2.13 5.06 0.00 0.00 0.00 0.00 0.00 6.06 5.26 4.17 3.03 0.00 1.82 0.00 0.00 3.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 2.70 0.00 0.00 0.00 0.00 0.00 1.45 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 K jcn_only_AD CaMKII,I_chr4_1069766_1069812,I_chr4_1071236_1071307,RI_chr4_1071236_1071315,I_chr4_1071489_1071884,RI_chr4_1071489_1071968,I_chr4_1071569_1071884,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1071236_1071968;chr4_1071236_1071884;chr4_1071236_1071813;chr4_1071236_1071319 chr4_1071236_1072054 chr4_1071136_1071235;chr4_1072055_1072059 0.00 NA 3.23 4.49 NA NA 2.00 1.10 1.35 NA NA 0.00 0.00 0.00 3.33 0.85 0.00 NA 0.00 1.96 3.57 0.00 0.00 NA NA NA NA NA 0.00 0.00 1.64 0.00 0.00 1.22 NA 0.00 NA NA NA 3.12 0.00 3.33 0.00 0.00 4.00 0.00 NA 1.75 0.00 NA NA NA NA NA 0.00 NA NA 1.98 K jcn_only_AA CG10462 chr2L - chr2L_19733580_19733638 chr2L_19733591_19733638 chr2L_19733639_19734280;chr2L_19733396_19733579 97.20 98.31 98.28 97.48 100.00 92.86 97.32 96.45 97.63 100.00 88.89 99.14 96.15 97.62 100.00 96.70 97.26 96.55 98.73 96.84 97.37 98.44 96.05 91.25 98.53 96.23 97.20 100.00 100.00 97.14 96.47 96.88 97.03 95.73 98.41 92.45 90.67 100.00 96.83 95.12 98.95 93.02 100.00 100.00 96.43 93.24 98.28 91.18 98.21 94.29 95.60 98.48 100.00 97.56 95.60 100.00 92.47 90.91 K intron_retention wech,I_chr2R_3373673_3377324,I_chr2R_3376705_3376837 chr2R - chr2R_3371070_3371151 chr2R_3371069_3371070;chr2R_3371151_3371152 chr2R_3370918_3371069;chr2R_3371152_3371304 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 4.17 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 7.14 7.41 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 12.50 0.00 0.00 0.00 3.64 NA 0.00 0.00 0.00 NA 12.50 0.00 0.00 0.00 NA 5.56 0.00 0.00 NA 0.00 0.00 NA 0.00 K intron_retention SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_17036802_17036862 chr3R_17036801_17036802;chr3R_17036862_17036863 chr3R_17036511_17036801;chr3R_17036863_17037041 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Adam,I_chr2R_5856741_5856974,I_chr2R_5856741_5857245,I_chr2R_5857058_5857250,I_chr2R_5857078_5857245 chr2R + chr2R_5856741_5856974 chr2R_5856741_5856965 chr2R_5856641_5856740;chr2R_5856975_5857057 98.99 100.00 99.35 99.07 98.88 98.48 98.38 99.39 98.93 99.32 99.05 99.36 100.00 98.73 99.26 98.54 98.62 98.27 99.16 98.71 100.00 99.60 99.20 98.59 98.33 100.00 98.65 99.18 99.20 98.99 99.39 99.55 98.39 98.05 98.75 100.00 98.83 98.90 98.83 98.66 99.21 98.66 100.00 98.73 98.99 98.48 99.60 98.97 99.58 98.60 99.25 97.64 98.94 99.20 98.75 99.05 97.80 99.18 K jcn_only_AA cnn,I_chr2R_9332229_9332269,I_chr2R_9333096_9336812,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9332200_9332269 chr2R_9332229_9332269 chr2R_9332270_9332369;chr2R_9332129_9332199 0.38 0.00 2.02 0.76 0.00 0.00 1.09 0.72 1.01 1.69 0.00 0.55 0.00 1.30 0.00 0.00 1.56 1.09 0.00 0.38 0.00 0.00 0.00 3.26 0.00 0.00 1.65 0.73 0.00 1.09 1.72 0.00 2.70 2.65 1.11 2.80 0.83 0.00 0.00 1.89 2.86 2.38 0.00 0.93 0.00 0.00 0.00 2.86 0.64 0.00 1.44 1.28 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG12428,I_chr3R_23531574_23532266 chr3R - chr3R_23531574_23531786;chr3R_23531574_23531981 chr3R_23531574_23532276 chr3R_23531474_23531573;chr3R_23532277_23532366 36.36 50.00 44.44 52.94 20.00 16.67 36.36 36.36 53.85 50.00 NA 53.85 NA 40.00 28.57 12.50 42.86 25.00 14.29 57.14 40.00 31.25 46.67 25.00 14.29 33.33 57.14 58.33 16.67 30.00 8.33 NA 25.00 37.50 63.64 14.29 14.29 57.14 0.00 28.57 0.00 53.85 0.00 44.44 NA 42.86 44.44 25.00 50.00 25.00 36.36 50.00 NA 33.33 57.14 0.00 57.14 70.00 K intron_retention CG9967 chr2L - chr2L_2309703_2310125 chr2L_2309702_2309703;chr2L_2310125_2310126 chr2L_2309516_2309702;chr2L_2310126_2310449 0.00 NA NA NA NA NA NA NA 19.23 NA NA 5.00 NA NA NA NA NA NA NA 12.50 NA NA 0.00 8.70 13.33 NA 14.29 5.56 0.00 0.00 NA 3.70 4.00 NA NA 0.00 0.00 0.00 2.56 0.00 6.25 0.00 NA 5.56 0.00 0.00 0.00 7.41 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention CG3505,CG3508 chr3R + chr3R_10483278_10483365 chr3R_10483277_10483278;chr3R_10483365_10483366 chr3R_10483262_10483277;chr3R_10483366_10483544 5.56 0.00 9.09 7.69 7.69 12.50 NA 0.00 6.90 NA 0.00 6.45 NA 0.00 7.14 9.68 NA 0.00 NA 8.82 NA NA 0.00 0.00 NA NA 5.88 0.00 NA NA 8.70 NA NA 5.26 NA NA 5.56 NA 12.50 NA NA 3.57 NA 5.56 NA NA 14.29 NA 7.50 NA 8.33 0.00 0.00 NA 0.00 NA 0.00 0.00 K alternative_donor CG32702,C_chrX_9453782_9453856,I_chrX_9468866_9473514 chrX - chrX_9453782_9453856 chrX_9453782_9453851 chrX_9453682_9453781;chrX_9453857_9453956 75.00 NA NA 66.67 NA NA 75.00 90.00 87.50 NA 75.00 70.00 NA NA NA NA NA 72.73 NA 62.50 NA 84.21 NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Rpb8 chr3L + chr3L_21722217_21722287 chr3L_21722216_21722217;chr3L_21722287_21722288 chr3L_21721921_21722216;chr3L_21722288_21722991 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.67 NA NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10326,I_chr3R_12469631_12469699 chr3R + chr3R_12469631_12469739 chr3R_12469630_12469631;chr3R_12469739_12469740 chr3R_12469531_12469630;chr3R_12469740_12469799 1.28 3.39 1.37 4.65 2.78 1.39 4.35 1.67 1.03 0.00 0.00 3.01 0.00 3.08 2.11 0.00 2.27 0.00 1.41 2.55 4.65 0.00 0.00 1.28 0.00 2.13 0.00 0.00 4.76 0.00 2.13 5.00 0.00 0.85 0.00 0.00 0.00 3.64 0.00 4.03 6.06 2.86 0.00 0.00 0.00 2.78 0.00 5.63 2.27 3.77 2.22 0.00 0.00 0.00 0.00 1.43 0.00 0.00 K jcn_only_AA CG17233,I_chr3L_20232803_20232962,RI_chr3L_20232898_20232962 chr3L - chr3L_20232714_20232962;chr3L_20232645_20232962;chr3L_20232711_20232962 chr3L_20232648_20232962 chr3L_20232963_20233016;chr3L_20232147_20232644 4.55 9.38 6.45 4.08 8.00 NA 4.17 2.94 6.78 NA NA 4.44 NA NA 6.45 4.76 0.00 4.55 9.09 16.07 0.00 0.00 7.69 9.52 NA NA 0.00 NA 0.00 2.63 4.76 NA 4.55 2.33 3.70 9.52 4.23 3.45 9.52 3.70 8.33 3.77 4.35 12.50 4.17 4.55 NA 2.33 0.00 5.00 10.26 5.88 4.55 NA 3.70 5.26 3.03 7.50 K mutually_exclusive CG6206,I_chr2L_10459281_10459879,I_chr2L_10459518_10459620,I_chr2L_10459518_10459661 chr2L + chr2L_10459281_10459661,chr2L_10459796_10459879 chr2L_10459281_10459383,chr2L_10459518_10459879 chr2L_10459662_10459795 chr2L_10459384_10459517 chr2L_10459181_10459280;chr2L_10459880_10459979 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 97.56 98.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 98.46 100.00 100.00 93.33 100.00 100.00 100.00 100.00 98.68 100.00 100.00 100.00 95.24 100.00 100.00 98.68 100.00 100.00 100.00 100.00 100.00 98.00 100.00 100.00 100.00 K intron_retention bmm,I_chr3L_14772123_14772190 chr3L - chr3L_14770708_14770777 chr3L_14770707_14770708;chr3L_14770777_14770778 chr3L_14770439_14770707;chr3L_14770778_14770866 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon CG7341,noncoding_13313,CG32195,I_chr3L_18112632_18112890 chr3L + chr3L_18106282_18107468;chr3L_18106282_18106718 chr3L_18106282_18112890,chr3L_18106282_18112871 chr3L_18107469_18107857;chr3L_18106719_18107164 chr3L_18112891_18114107 chr3L_18106149_18106281 61.54 53.33 53.33 60.00 58.33 58.33 63.64 65.22 63.33 50.00 45.45 60.00 70.00 66.67 47.06 73.08 63.64 60.00 69.23 60.71 54.55 50.00 63.16 63.16 60.00 73.33 62.50 29.63 50.00 52.63 66.67 71.43 68.00 60.87 45.45 50.00 56.25 69.23 72.22 56.52 45.45 62.96 72.73 57.14 50.00 60.00 69.23 33.33 66.67 73.68 68.42 75.00 61.54 72.73 70.59 70.59 76.19 55.00 K jcn_only_AA HLH106,RI_chr3L_19787260_19787323 chr3L + chr3L_19787260_19787323;chr3L_19787260_19787998;chr3L_19787260_19787663 chr3L_19787260_19787773 chr3L_19787254_19787259 0.00 3.45 0.00 1.03 0.00 0.00 0.00 0.00 1.33 NA 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 NA 2.22 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 2.33 2.78 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 K alternative_donor Cdk4,RI_chr2R_12471503_12471656 chr2R + chr2R_12467432_12468346;chr2R_12467241_12468346;chr2R_12467275_12468346;chr2R_12467474_12468346;chr2R_12467225_12468346;chr2R_12467227_12468346;chr2R_12467261_12468346;chr2R_12467039_12468346 chr2R_12467202_12468346 chr2R_12468347_12468520;chr2R_12467030_12467038 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Hlc chrX - chrX_21257309_21257376 chrX_21257319_21257376 chrX_21257377_21257805;chrX_21256593_21257308 100.00 100.00 100.00 100.00 100.00 100.00 99.01 100.00 99.21 100.00 97.96 100.00 100.00 100.00 100.00 99.02 97.96 100.00 98.63 99.19 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 99.06 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 97.56 100.00 98.15 K alternative_donor vkg,I_chr2L_5027222_5027297,I_chr2L_5027222_5028118 chr2L - chr2L_5027222_5027297;chr2L_5027222_5028118 chr2L_5027222_5027351 chr2L_5027122_5027221;chr2L_5028119_5028218 81.82 88.89 85.71 76.67 86.36 88.24 76.92 71.79 87.10 85.71 88.46 73.17 76.60 81.48 69.70 86.36 91.67 80.00 70.00 76.06 80.00 75.00 87.50 84.62 83.33 64.29 80.95 100.00 88.89 100.00 86.67 81.82 71.43 76.92 71.43 66.67 93.94 100.00 85.00 83.33 71.43 78.43 75.00 90.00 50.00 70.00 85.71 75.00 76.92 84.62 84.62 85.71 78.57 75.00 83.33 80.00 92.31 85.00 K intron_retention sol chrX + chrX_21227675_21227733 chrX_21227674_21227675;chrX_21227733_21227734 chrX_21227168_21227674;chrX_21227734_21228000 0.00 0.00 3.51 3.70 0.00 0.00 0.00 0.00 1.40 0.00 4.17 4.35 0.00 0.00 4.11 0.00 0.00 0.00 1.96 1.90 3.92 8.41 0.00 0.00 3.03 2.99 0.00 0.00 9.09 0.00 0.00 0.00 3.57 2.20 2.33 0.00 1.74 1.27 0.00 0.00 0.00 1.59 0.00 0.00 0.00 1.59 0.00 0.00 0.95 1.20 2.27 1.75 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA e(y)3,I_chrX_19528120_19528166 chrX - chrX_19528105_19528166 chrX_19528120_19528166 chrX_19528167_19528266;chrX_19528020_19528104 1.97 1.25 2.44 2.04 1.15 2.60 3.20 3.55 1.50 1.28 0.00 4.71 0.00 1.15 0.96 2.56 0.00 3.12 2.88 2.70 1.09 2.35 1.91 1.52 0.00 3.06 2.06 0.00 0.99 3.45 2.30 1.89 0.82 2.42 3.08 2.20 1.69 1.98 1.97 1.79 0.00 2.13 1.22 2.33 0.00 2.38 0.00 4.35 3.33 0.00 0.84 0.00 0.00 4.44 3.48 5.17 1.49 2.88 K alternative_acceptor brat,I_chr2L_19134277_19143634,EI_chr2L_19145845_19145958,RI_chr2L_19145845_19146761 chr2L + chr2L_19145845_19166084 chr2L_19145845_19145958 chr2L_19145819_19145844;chr2L_19166085_19166125 13.64 12.50 14.29 8.00 14.29 11.11 18.18 10.53 13.64 11.11 25.00 22.22 10.00 16.67 12.50 15.38 8.33 20.00 5.56 17.65 12.50 10.00 16.67 11.11 14.29 20.00 13.33 16.67 12.50 14.29 8.33 50.00 10.00 11.76 20.00 12.50 18.18 12.50 12.50 11.76 50.00 10.53 12.50 16.67 25.00 25.00 33.33 22.22 12.50 12.50 13.33 11.11 50.00 50.00 7.14 33.33 33.33 16.67 K alternative_acceptor I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_927771_929704,CG32021,RI_chr4_928193_928245,I_chr4_928482_929704,noncoding_20815,I_chr4_929811_932812 chr4 - chr4_928482_929704;chr4_927771_929704 chr4_928551_929704 chr4_929705_929804;chr4_927741_927770 72.23 62.96 82.93 49.02 66.67 78.79 78.70 80.77 77.78 79.10 32.50 74.71 65.52 63.89 58.00 46.81 62.07 83.33 50.00 54.13 72.73 74.79 51.79 72.53 78.48 82.35 80.65 62.93 64.55 77.38 69.05 NA 75.61 78.79 81.36 72.83 60.00 75.68 77.24 84.89 60.71 69.41 87.10 64.14 57.14 86.41 59.72 71.20 63.01 75.45 78.35 87.50 64.44 71.93 83.72 56.06 58.67 47.69 K jcn_only_AD pyd,I_chr3R_4654041_4664113,I_chr3R_4749124_4756437 chr3R - chr3R_4668562_4690507 chr3R_4668562_4670637 chr3R_4668392_4668561 14.29 13.89 14.29 16.95 11.11 13.95 24.14 21.15 15.00 21.43 22.22 7.27 15.00 10.34 12.00 23.68 13.04 NA 14.29 17.74 13.64 43.75 14.71 10.00 9.68 11.54 12.28 63.16 25.00 6.06 10.81 NA 21.88 25.00 6.67 17.95 16.00 10.53 11.48 11.27 NA 10.84 24.00 7.84 NA 0.00 16.67 13.79 23.53 22.22 23.33 23.53 NA 14.29 6.67 9.09 NA NA N jcn_only_AA RI_chrX_22094836_22142377,noncoding_25169 chrX + chrX_22120111_22120222 chrX_22120111_22120219 chrX_22120097_22120110;chrX_22120223_22120518 9.78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA NA NA 14.55 N alternative_acceptor CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261460_261555;chr4_261460_263086 chr4_261460_263113 chr4_261360_261459;chr4_263114_263305 14.29 18.18 21.43 10.53 12.50 9.09 3.33 3.23 13.95 NA 0.00 17.39 7.69 0.00 20.00 17.50 8.33 9.09 12.50 11.11 14.29 20.00 14.29 0.00 0.00 28.57 16.67 NA 0.00 33.33 29.41 0.00 16.67 11.11 20.00 0.00 20.00 20.00 NA 8.33 33.33 18.52 6.67 0.00 20.00 0.00 22.22 25.00 16.67 0.00 11.11 0.00 25.00 16.67 31.25 NA 14.29 14.29 K jcn_only_AD ScpX chr2L + chr2L_18831359_18831722 chr2L_18831387_18831722 chr2L_18831723_18832046;chr2L_18831240_18831358 100.00 100.00 97.87 100.00 100.00 100.00 96.77 100.00 100.00 100.00 96.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.09 100.00 100.00 100.00 98.39 100.00 98.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.94 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.84 100.00 100.00 99.07 100.00 K alternative_acceptor CG10462 chr2L - chr2L_19734281_19734469;chr2L_19734413_19734469 chr2L_19734410_19734469 chr2L_19734470_19734941;chr2L_19733639_19734280 35.62 31.25 31.43 39.34 36.36 25.00 43.94 35.53 32.61 38.46 30.43 32.86 43.24 35.14 38.46 42.67 28.21 42.42 41.30 31.34 36.36 38.71 31.11 28.95 25.00 36.36 33.33 47.62 32.14 28.57 38.46 36.00 47.92 35.62 27.59 34.15 31.25 29.17 37.50 31.37 35.90 33.82 46.15 29.41 50.00 42.11 43.75 35.71 34.21 32.43 42.11 37.04 40.00 37.50 38.30 35.48 33.33 28.85 K intron_retention dgt3 chr2R - chr2R_16881369_16881430 chr2R_16881368_16881369;chr2R_16881430_16881431 chr2R_16881010_16881368;chr2R_16881431_16881759 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 5.56 0.00 0.00 K mutually_exclusive musashi,C_chr3R_21387506_21389801,I_chr3R_21402020_21409940 chr3R + chr3R_21345452_21400605,chr3R_21400645_21420795 chr3R_21345452_21389801,chr3R_21389850_21420795 chr3R_21400606_21400644 chr3R_21389802_21389849 chr3R_21345433_21345451;chr3R_21420796_21421324 25.00 NA NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG11148,RI_chr4_886921_887162 chr4 - chr4_886921_887601;chr4_886921_887595;chr4_886921_887591 chr4_886921_887162 chr4_886821_886920;chr4_887602_887637 3.28 NA 3.12 3.39 0.00 4.17 7.14 1.47 1.49 NA 4.17 5.66 0.00 7.50 0.00 2.56 0.00 3.57 2.27 2.82 4.00 NA 0.00 NA 20.00 0.00 NA NA 6.45 NA 0.00 NA 0.00 3.28 NA 8.33 NA NA NA 4.17 NA 4.48 2.94 7.41 NA NA NA 3.85 5.26 NA 10.00 NA NA NA 2.44 NA NA 2.33 K intron_retention CG17490 chr2L + chr2L_22431020_22432684 chr2L_22431019_22431020;chr2L_22432684_22432685 chr2L_22431014_22431019;chr2L_22432685_22433056 94.44 92.86 100.00 94.44 90.00 100.00 100.00 82.86 97.37 NA 88.89 89.47 100.00 93.33 81.25 98.18 94.44 100.00 100.00 94.74 100.00 100.00 88.89 100.00 NA 100.00 NA NA NA NA 96.00 NA NA 96.97 88.89 NA NA NA 88.89 100.00 NA 86.67 89.47 100.00 NA 88.89 92.31 90.00 97.06 92.31 91.67 90.91 90.00 100.00 95.00 100.00 92.31 92.86 K jcn_only_AA CG10979,I_chr3R_1621563_1621607,RI_chr3R_1621781_1621856 chr3R + chr3R_1621563_1621632 chr3R_1621563_1621607 chr3R_1621463_1621562;chr3R_1621633_1621707 0.00 0.00 0.00 0.00 0.00 5.13 1.39 0.00 0.00 3.23 3.03 3.80 0.00 0.00 1.89 1.54 3.23 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 5.45 0.00 0.00 0.00 6.25 2.78 0.00 0.00 2.38 1.92 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 1.45 NA 0.00 5.88 NA 0.00 2.56 0.00 4.76 0.00 K alternative_acceptor CG31731,I_chr2L_13786850_13786922 chr2L + chr2L_13784595_13784785 chr2L_13784595_13784756 chr2L_13784471_13784594;chr2L_13784786_13784986 0.00 0.00 0.00 5.77 0.00 0.00 2.56 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 2.00 0.00 4.35 2.94 0.00 0.00 0.00 0.00 1.85 NA NA 1.49 0.00 0.00 0.00 0.00 2.27 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA N cassette Tm1,I_chr3R_11126545_11128874,I_chr3R_11128245_11128874 chr3R + chr3R_11127409_11129362 chr3R_11127409_11128874;chr3R_11128945_11129362 chr3R_11128875_11128944 chr3R_11127346_11127408;chr3R_11129363_11130547 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention drpr,I_chr3L_1718154_1723579,I_chr3L_1720385_1723579,CG18171 chr3L - chr3L_1720170_1723579 chr3L_1720169_1720170;chr3L_1723579_1723580 chr3L_1719923_1720169;chr3L_1723580_1723679 16.75 13.27 9.91 36.99 12.77 14.16 14.48 22.22 14.02 5.88 22.41 31.29 10.43 12.87 14.73 20.21 14.29 12.50 17.54 15.35 15.66 18.10 23.61 17.14 13.85 14.41 23.53 23.08 24.44 24.49 16.41 24.32 19.18 15.79 22.64 47.37 15.73 15.69 14.77 17.24 28.57 13.68 16.48 17.46 17.02 19.05 14.04 23.44 16.75 13.70 18.99 23.26 18.18 22.22 14.69 13.04 20.37 15.38 K alternative_acceptor Klc,I_chr3L_12741058_12741155,I_chr3L_12741783_12742943,I_chr3L_12741838_12743062 chr3L - chr3L_12741042_12741155 chr3L_12741058_12741155 chr3L_12741156_12741255;chr3L_12740958_12741041 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Hsc70-3,I_chrX_11699076_11699138,I_chrX_11699076_11699158,I_chrX_11699076_11699260,EI_chrX_11699076_11699573,I_chrX_11699076_11700062 chrX - chrX_11699076_11699321;chrX_11699076_11699923 chrX_11699076_11699335 chrX_11698976_11699075;chrX_11699924_11699938 1.79 0.00 1.79 0.68 0.00 5.26 4.00 2.05 0.93 3.17 0.00 2.38 0.00 0.00 3.17 0.78 0.00 6.00 1.15 2.50 0.00 0.00 0.00 1.89 0.00 0.00 1.23 4.55 2.08 0.00 2.63 2.00 2.06 0.89 0.00 0.00 0.00 0.00 4.00 0.00 1.49 1.81 1.61 2.99 7.25 0.79 2.94 1.91 0.59 2.06 2.53 4.41 1.92 0.00 3.66 4.00 3.30 3.07 K alternative_acceptor hts,I_chr2R_15286599_15294119,I_chr2R_15311185_15312327,I_chr2R_15311303_15312026 chr2R - chr2R_15286305_15286530 chr2R_15286311_15286530 chr2R_15286531_15286598;chr2R_15286061_15286304 54.35 60.34 57.75 59.46 64.06 51.47 50.00 51.25 54.66 50.00 48.15 55.23 58.82 59.32 52.50 66.15 58.21 53.85 53.57 56.41 63.27 55.56 56.34 56.06 50.00 53.76 44.00 31.25 62.50 42.31 54.17 51.35 52.70 57.76 54.35 47.73 50.00 58.97 59.74 57.01 54.84 55.42 51.43 52.83 61.36 61.02 50.94 51.85 59.24 50.00 52.63 52.38 53.85 57.14 60.20 53.45 58.54 53.45 K alternative_donor I_chr3L_18892015_18892405,RpL26,I_chr3L_18892244_18892405,I_chr3L_18892340_18892405,I_chr3L_18892434_18892499 chr3L + chr3L_18892240_18892405 chr3L_18892340_18892405 chr3L_18892406_18892433;chr3L_18892172_18892239 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.16 0.00 0.00 0.00 0.44 0.00 0.13 0.43 0.21 0.29 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 2.41 0.52 0.00 0.44 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.67 0.08 0.00 0.00 0.42 0.71 0.00 0.23 0.16 0.87 0.00 0.00 0.32 0.00 0.14 0.79 0.47 0.25 K intron_retention myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_716066_716482 chr4_716065_716066;chr4_716482_716483 chr4_716053_716065;chr4_716483_716490 100.00 100.00 88.89 96.77 NA 100.00 96.43 100.00 97.50 NA 88.89 100.00 100.00 100.00 88.89 100.00 100.00 90.00 91.67 100.00 88.89 NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 96.00 83.33 100.00 NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K alternative_donor Tango13,I_chrX_13480088_13480998,I_chrX_13483861_13483954 chrX + chrX_13480088_13483954 chrX_13480126_13483954 chrX_13483955_13484054;chrX_13479988_13480087 4.11 4.17 5.88 3.81 4.11 1.47 4.11 4.31 3.78 3.94 0.00 2.14 0.00 3.17 3.19 4.21 1.41 16.00 1.54 2.53 1.27 9.43 3.53 5.60 3.57 3.12 4.59 5.41 8.22 5.79 3.70 7.81 4.00 3.51 5.38 6.25 4.02 3.12 4.71 5.00 1.92 4.17 3.51 3.42 11.94 6.36 4.88 5.83 5.15 5.88 4.35 3.85 4.55 4.55 3.70 4.35 6.56 3.95 K intron_retention yellow-f2,CG17327 chr3R - chr3R_8820042_8820149 chr3R_8820041_8820042;chr3R_8820149_8820150 chr3R_8819386_8820041;chr3R_8820150_8820539 64.00 52.50 64.00 70.59 55.00 73.68 82.76 65.96 63.64 44.44 66.67 50.79 88.89 62.50 80.65 62.16 73.68 62.50 91.67 47.62 69.70 82.69 54.72 58.70 73.08 68.18 77.08 52.94 75.00 73.53 90.79 77.42 60.78 65.00 56.25 60.00 56.92 60.98 53.33 61.22 72.73 63.64 65.00 60.53 37.78 71.19 60.78 50.94 46.97 72.73 64.00 60.00 58.06 65.62 80.77 64.44 70.83 65.31 K alternative_acceptor CG31997,I_chr4_175592_176390 chr4 - chr4_175575_175652 chr4_175592_175652 chr4_175653_175721;chr4_175514_175574 100.00 100.00 99.19 100.00 100.00 99.11 100.00 99.40 100.00 100.00 100.00 99.54 100.00 100.00 100.00 100.00 99.03 100.00 99.33 100.00 100.00 98.08 99.20 100.00 98.46 99.03 100.00 100.00 98.25 100.00 99.38 100.00 100.00 99.48 99.01 100.00 100.00 100.00 100.00 100.00 100.00 99.55 100.00 99.15 100.00 99.38 100.00 98.51 100.00 99.14 100.00 100.00 100.00 99.00 100.00 100.00 99.09 99.02 K intron_retention CG4572,FI_chr3R_15689914_15690042 chr3R - chr3R_15689038_15689310 chr3R_15689037_15689038;chr3R_15689310_15689311 chr3R_15688239_15689037;chr3R_15689311_15689913 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.62 K intron_retention CG1640,RI_chrX_13271013_13271890,I_chrX_13271541_13271890 chrX + chrX_13268419_13271890 chrX_13268418_13268419;chrX_13271890_13271891 chrX_13268274_13268418;chrX_13271891_13271980 2.80 2.50 4.88 0.53 4.17 4.46 3.41 3.23 3.75 3.64 2.00 3.26 3.80 5.68 5.45 1.37 0.00 4.21 4.20 3.37 2.90 2.80 1.85 4.26 1.54 1.52 1.87 8.82 1.33 3.03 1.80 0.00 5.03 5.56 2.04 4.90 2.94 1.16 2.13 2.80 2.00 3.03 2.11 2.54 1.47 1.91 0.00 2.95 4.43 0.92 2.34 0.00 1.00 1.20 3.55 2.80 1.85 0.89 K intron_retention Arf51F,I_chr2R_11210733_11210953 chr2R + chr2R_11210247_11210953 chr2R_11210246_11210247;chr2R_11210953_11210954 chr2R_11209979_11210246;chr2R_11210954_11211053 5.56 3.66 3.60 4.31 9.09 7.79 12.04 5.16 6.63 6.56 5.48 24.53 8.57 3.66 5.56 3.42 9.23 6.61 4.81 4.37 2.47 15.09 6.59 5.56 16.39 13.25 8.70 7.89 13.41 5.68 4.40 4.12 2.56 7.14 3.19 32.76 4.76 9.26 5.95 6.79 6.67 4.37 9.86 9.41 9.71 3.80 4.62 3.50 4.73 4.35 6.96 7.25 2.41 3.12 5.22 5.21 3.19 2.79 K cassette CG10737 chr2R + chr2R_15061871_15062386 chr2R_15061871_15062081;chr2R_15062289_15062386 chr2R_15062082_15062288 chr2R_15061844_15061870;chr2R_15062387_15062591 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.38 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_162747_162825 chr4_162754_162825 chr4_162826_163517;chr4_160896_162746 100.00 100.00 100.00 100.00 98.59 100.00 99.44 100.00 100.00 97.83 100.00 99.49 98.81 100.00 100.00 100.00 100.00 100.00 100.00 99.52 100.00 100.00 100.00 100.00 100.00 98.89 100.00 100.00 96.00 98.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.58 100.00 98.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Kdm4B,seq chr2R - chr2R_9074825_9074898 chr2R_9074824_9074825;chr2R_9074898_9074899 chr2R_9074486_9074824;chr2R_9074899_9075321 0.00 0.00 3.45 25.00 0.00 0.00 8.00 5.71 5.26 0.00 NA 1.54 NA 0.00 0.00 6.12 NA 8.70 6.67 2.41 0.00 NA 0.00 11.76 NA NA 12.50 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 8.33 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 4.35 NA NA 0.00 K intron_retention dco,RI_chr3R_26883647_26884261,I_chr3R_26883651_26883729,RI_chr3R_26883651_26886096,I_chr3R_26884350_26884670,I_chr3R_26884350_26886671,I_chr3R_26884350_26886791,RI_chr3R_26884365_26886096,I_chr3R_26884365_26886798 chr3R - chr3R_26883651_26886096 chr3R_26883650_26883651;chr3R_26886096_26886097 chr3R_26883551_26883650;chr3R_26886097_26886186 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA NA 8.33 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_last_exon CG31108,RI_chr3R_20940642_20940700,CG31510 chr3R - chr3R_20941880_20948282 chr3R_20946869_20948282 chr3R_20941834_20941879 chr3R_20943147_20946868 chr3R_20948283_20948615 83.33 78.57 68.75 70.59 80.00 90.91 81.82 80.65 91.18 100.00 87.50 70.97 85.71 75.00 80.00 88.46 85.71 71.43 93.75 88.46 80.00 80.00 85.00 93.33 90.00 70.59 87.50 77.78 73.33 78.57 68.42 87.50 77.78 74.19 84.62 91.67 91.67 80.00 81.25 80.77 57.14 78.79 85.71 84.21 85.71 100.00 91.67 75.00 89.66 100.00 100.00 100.00 85.71 88.89 76.19 81.82 77.78 83.33 K intron_retention CG3884 chr2R - chr2R_8838855_8839350 chr2R_8838854_8838855;chr2R_8839350_8839351 chr2R_8837909_8838854;chr2R_8839351_8839383 8.33 6.25 12.50 21.74 6.67 8.00 23.08 8.33 5.41 NA NA 8.33 NA 8.70 11.43 9.09 10.53 4.35 16.67 5.41 0.00 NA 9.52 7.69 NA NA 13.04 33.33 NA 7.69 11.43 4.35 11.54 8.00 13.33 NA 20.00 0.00 8.82 15.38 NA 10.00 22.73 0.00 7.41 15.38 5.56 15.38 11.36 NA 6.90 NA 0.00 5.56 4.17 5.56 3.12 5.00 K intron_retention CG42593,F_chrX_7841357_7841447 chrX + chrX_7835229_7835288 chrX_7835228_7835229;chrX_7835288_7835289 chrX_7834816_7835228;chrX_7835289_7835447 22.00 16.00 15.62 22.86 5.88 12.50 32.14 22.58 17.39 NA 15.00 18.00 12.50 21.43 22.73 31.82 29.17 31.03 24.14 13.21 25.93 25.00 20.00 20.00 23.08 0.00 13.33 25.00 16.67 17.86 25.81 38.46 33.33 19.30 18.18 0.00 20.00 23.08 21.43 15.69 NA 17.02 33.33 23.08 38.46 47.83 42.86 21.43 19.15 46.15 18.18 25.00 NA 50.00 20.00 26.32 31.25 26.67 K jcn_only_AD RhoGAP15B chrX + chrX_16843485_16845017 chrX_16843611_16845017 chrX_16845018_16847301;chrX_16842887_16843484 6.74 6.49 9.52 6.67 6.67 11.59 13.83 2.65 8.59 7.41 8.51 11.54 3.08 8.06 8.79 6.32 3.57 8.93 4.94 6.82 9.80 67.95 6.25 4.80 6.10 7.41 7.09 0.00 26.56 9.09 3.23 3.03 12.35 6.74 11.43 11.69 5.52 3.49 4.80 5.65 20.69 4.00 0.00 6.19 6.67 10.00 13.33 25.45 3.45 6.45 5.66 7.14 9.09 6.00 7.69 5.56 1.54 9.76 K mutually_exclusive Aldh-III,RE_chr2R_3355332_3355720,I_chr2R_3356541_3356614,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3355332_3356614,chr2R_3356731_3356864 chr2R_3355332_3355926,chr2R_3356043_3356864 chr2R_3356615_3356730 chr2R_3355927_3356042 chr2R_3355296_3355331;chr2R_3356865_3357018 75.00 75.25 67.54 78.30 68.42 70.45 80.43 66.94 74.87 73.08 83.67 80.13 69.23 71.26 77.23 65.62 72.73 75.56 74.34 64.98 84.51 48.94 73.45 77.68 60.71 56.94 76.19 74.07 61.54 69.64 77.36 80.65 73.21 77.70 77.05 89.13 71.55 72.04 73.48 68.14 52.38 77.09 79.37 75.56 80.82 70.49 81.45 78.33 75.17 80.41 77.31 73.85 79.10 70.21 75.00 75.86 84.55 79.66 K intron_retention CG9338,CG31675 chr2L + chr2L_20865586_20866935 chr2L_20865585_20865586;chr2L_20866935_20866936 chr2L_20865412_20865585;chr2L_20866936_20867640 1.34 2.36 1.26 5.88 0.00 1.15 1.54 2.09 2.27 0.00 2.76 1.70 0.00 2.78 2.11 1.88 1.52 1.34 1.66 2.24 1.38 4.88 1.69 1.60 0.00 0.00 2.82 0.00 0.00 0.00 0.00 1.94 0.00 2.86 0.00 0.00 2.27 2.74 0.81 1.46 0.00 1.59 1.32 2.01 0.88 1.73 0.68 1.18 2.32 0.91 1.01 0.00 0.76 0.48 1.34 0.00 1.25 2.56 K jcn_only_AA bt,I_chr4_792222_794646,I_chr4_794938_795011 chr4 + chr4_794938_795011 chr4_794938_795002 chr4_794838_794937;chr4_795012_795111 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 98.59 NA 100.00 100.00 100.00 100.00 100.00 98.36 100.00 NA 100.00 100.00 96.15 NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 98.00 NA 95.65 98.63 NA NA 100.00 100.00 NA 93.10 NA 97.92 100.00 97.06 NA 87.50 100.00 NA 100.00 95.45 NA 91.67 NA NA 100.00 NA NA 100.00 K intron_retention CG16718,EI_chr3R_15465136_15466705 chr3R - chr3R_15465136_15466820 chr3R_15465135_15465136;chr3R_15466820_15466821 chr3R_15465036_15465135;chr3R_15466821_15466878 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.56 NA 15.00 16.67 NA NA NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 14.29 NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA K alternative_donor CG13771 chr2L - chr2L_6663068_6663123;chr2L_6663068_6663127 chr2L_6663068_6663131 chr2L_6662854_6663067;chr2L_6663132_6663374 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA NA 77.78 NA NA NA NA NA 87.50 NA 80.00 NA NA NA NA NA NA NA NA NA 55.56 K intron_retention Clic chrX - chrX_13708920_13715957 chrX_13708919_13708920;chrX_13715957_13715958 chrX_13708410_13708919;chrX_13715958_13716374 0.73 0.66 0.94 1.22 0.76 0.60 0.91 1.35 1.31 0.00 0.71 1.41 1.25 1.27 0.91 1.27 1.20 1.54 0.98 1.11 0.51 1.63 0.70 0.49 0.42 0.93 1.01 1.98 0.86 0.75 0.48 0.00 0.92 1.01 0.73 0.52 0.29 0.00 0.13 0.37 0.33 0.96 1.26 0.27 0.00 0.00 0.00 0.52 0.74 0.73 0.38 0.21 0.00 0.30 0.77 0.37 0.00 0.24 K jcn_only_AA spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20336405_20336469;chr2L_20336405_20336463 chr2L_20336405_20336466 chr2L_20336338_20336404;chr2L_20336470_20336529 73.24 67.39 73.81 65.08 70.83 76.60 77.63 72.67 68.04 80.56 74.39 68.90 73.24 75.00 76.53 75.83 72.73 75.79 70.48 73.74 72.06 68.47 66.67 78.46 75.36 78.49 76.27 67.76 70.55 76.69 70.22 73.24 70.23 70.30 64.36 78.43 76.64 61.80 69.23 73.20 71.74 73.66 75.00 76.87 75.84 79.31 69.81 72.47 71.43 68.00 75.59 60.00 83.33 73.74 68.42 71.84 73.95 75.15 K jcn_only_AA mld,atl chr3R + chr3R_20451535_20457511 chr3R_20451535_20457504 chr3R_20451524_20451534;chr3R_20457512_20457813 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 96.55 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 94.74 100.00 100.00 97.73 100.00 96.77 95.35 100.00 100.00 96.67 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 NA 100.00 K alternative_acceptor CG7849 chr2R + chr2R_1964879_1964943 chr2R_1964879_1964927 chr2R_1964666_1964878;chr2R_1964944_1965538 100.00 90.91 100.00 NA 87.50 NA NA NA 90.00 NA NA 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 85.71 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 91.67 NA 100.00 NA NA 90.00 NA NA 100.00 84.62 100.00 100.00 91.67 100.00 100.00 100.00 NA N alternative_donor CG41320 chr3LHet + chr3LHet_1532849_1545754 chr3LHet_1545188_1545754 chr3LHet_1545755_1545890;chr3LHet_1532736_1532848 0.00 0.00 0.00 0.00 NA 0.00 20.00 0.00 12.50 NA 0.00 50.00 NA 0.00 0.00 20.00 0.00 0.00 0.00 25.00 0.00 NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 14.29 0.00 NA NA 0.00 0.00 NA NA 20.00 0.00 0.00 NA 0.00 0.00 0.00 20.00 NA NA NA 0.00 0.00 0.00 NA NA NA K alternative_acceptor CG7971,I_chr3L_1659363_1659845,I_chr3L_1667736_1667806 chr3L - chr3L_1659991_1661108 chr3L_1660858_1661108 chr3L_1661109_1661165;chr3L_1659846_1659990 1.86 1.92 2.13 2.47 0.00 0.00 6.82 3.03 2.11 2.44 2.94 4.17 5.41 3.23 2.00 5.17 0.00 3.03 2.38 1.45 2.22 0.00 1.16 1.25 2.78 3.23 2.38 2.00 1.27 0.00 1.79 1.61 0.54 2.90 1.92 1.85 0.00 0.00 0.00 0.60 2.11 1.87 NA 1.32 1.32 1.19 1.69 0.60 2.50 3.23 0.00 0.00 0.00 0.00 1.61 2.50 2.50 0.56 K alternative_donor Df31,RE_chr2L_21628206_21629662,I_chr2L_21628206_21629666,I_chr2L_21628210_21628515,I_chr2L_21628210_21628944,I_chr2L_21628210_21629216,EI_chr2L_21628210_21629715,REI_chr2L_21628210_21629884,I_chr2L_21628224_21629666 chr2L - chr2L_21628210_21629216;chr2L_21628210_21629666;chr2L_21628210_21628944;chr2L_21628210_21629715;chr2L_21628210_21629884 chr2L_21628210_21628515 chr2L_21628124_21628209;chr2L_21629885_21629918 0.44 0.44 0.34 0.51 0.58 0.62 0.30 0.45 0.22 0.20 0.56 0.65 0.48 0.45 0.45 0.47 0.32 0.57 0.35 0.42 0.40 0.56 0.42 0.55 0.24 0.33 1.07 1.28 0.66 0.57 0.49 0.24 0.97 0.42 0.61 0.73 0.44 0.18 0.83 0.40 0.25 0.42 0.31 0.27 0.39 0.49 0.47 0.74 0.48 0.53 0.56 0.30 0.20 0.38 0.13 0.44 0.16 0.27 K jcn_only_AD SD23414,CG9132,I_chrX_16693612_16694097,I_chrX_16693612_16694529,I_chrX_16696492_16696589 chrX - chrX_16693612_16694097;chrX_16693612_16696171 chrX_16693612_16694558 chrX_16693512_16693611;chrX_16696172_16696233 100.00 98.84 98.89 97.87 100.00 100.00 100.00 100.00 99.34 100.00 100.00 100.00 100.00 100.00 98.80 100.00 100.00 100.00 100.00 100.00 100.00 98.72 98.93 99.15 100.00 100.00 97.12 98.18 100.00 100.00 98.95 97.67 100.00 100.00 100.00 98.48 100.00 99.19 100.00 100.00 100.00 99.30 98.39 98.77 100.00 98.97 98.65 100.00 100.00 100.00 99.37 98.08 100.00 100.00 100.00 100.00 100.00 98.28 K intron_retention CG11526 chr3L - chr3L_3322843_3322909 chr3L_3322842_3322843;chr3L_3322909_3322910 chr3L_3322484_3322842;chr3L_3322910_3324636 14.75 12.61 22.62 30.16 21.52 17.39 26.61 14.29 17.65 9.64 26.39 15.00 9.52 15.00 25.00 15.84 21.33 12.50 16.44 14.75 23.08 13.56 17.86 9.93 28.72 31.94 17.73 26.13 44.38 12.43 11.94 11.79 10.68 18.55 16.51 16.19 10.49 12.61 13.45 11.16 25.85 17.02 17.74 9.33 14.66 12.50 9.15 13.21 19.01 14.21 13.86 14.77 12.10 8.70 13.00 12.21 9.91 8.58 K intron_retention CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3086337_3086397 chr3L_3086336_3086337;chr3L_3086397_3086398 chr3L_3085865_3086336;chr3L_3086398_3086514 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16045854 chr3L_16045275_16045854 chr3L_16045855_16045954;chr3L_16045216_16045250 14.29 NA NA NA NA NA 14.29 NA 22.73 NA NA NA NA NA NA 11.11 NA NA NA 10.34 NA NA NA NA NA NA NA 19.05 NA NA NA NA 5.00 4.00 NA 25.00 NA NA NA 0.00 NA 15.38 NA NA NA NA NA 15.00 NA NA NA NA NA NA NA NA NA NA K intron_retention CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_119236_119430 chr2L_119235_119236;chr2L_119430_119431 chr2L_119227_119235;chr2L_119431_119554 76.69 NA 70.00 94.44 70.00 63.64 93.75 76.47 88.89 NA NA 79.17 80.00 NA 66.67 70.00 87.50 60.00 91.67 72.73 60.00 90.00 65.00 88.89 66.67 50.00 86.67 75.00 NA 60.00 63.64 NA NA 70.59 NA 78.95 NA NA NA 76.92 90.00 83.33 80.00 NA NA NA NA 77.78 82.14 NA 69.23 77.78 NA NA 64.29 NA NA NA K intron_retention cno,I_chr3R_999718_999986,I_chr3R_999737_999777,I_chr3R_1003608_1005580,noncoding_14652,F_chr3R_1006551_1006778,I_chr3R_1006714_1006778 chr3R - chr3R_1003608_1006778 chr3R_1003607_1003608;chr3R_1006778_1006779 chr3R_1003508_1003607;chr3R_1006779_1006837 4.11 4.11 1.52 12.12 0.00 7.14 4.35 5.26 4.94 4.35 2.04 4.32 0.00 3.39 4.62 5.06 5.00 2.08 5.48 11.11 3.51 5.85 2.94 1.94 1.00 0.00 1.82 5.56 10.68 4.55 2.90 10.87 6.36 3.57 4.00 1.67 2.60 4.48 4.20 6.02 4.84 5.11 3.85 4.76 8.77 3.03 1.41 6.34 6.38 4.12 1.40 4.00 0.00 0.00 2.78 0.00 0.00 2.74 K intron_retention mth chr3L - chr3L_343653_344106 chr3L_343652_343653;chr3L_344106_344107 chr3L_343440_343652;chr3L_344107_344301 1.65 3.70 0.00 3.23 0.00 12.50 1.54 3.23 5.97 0.00 9.09 1.75 0.00 0.00 3.23 8.51 0.00 NA 0.00 8.33 11.11 0.00 5.00 0.00 4.35 0.00 4.76 0.00 NA 0.00 0.00 0.00 0.00 3.92 0.00 7.14 0.00 0.00 3.70 5.17 0.00 2.27 11.76 5.13 NA 2.78 7.69 NA 6.45 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.38 4.17 K jcn_only_AA CG34449,RI_chrX_9232665_9233022,RI_chrX_9249209_9250033,RI_chrX_9249212_9250033,RI_chrX_9249212_9250244 chrX - chrX_9232467_9232545 chrX_9232482_9232545 chrX_9232546_9232664;chrX_9232324_9232466 66.06 56.67 71.93 69.39 67.92 55.71 58.62 60.94 63.30 76.79 55.74 68.09 76.00 63.27 66.10 71.79 64.58 67.74 61.67 67.80 50.00 71.29 60.67 69.89 67.74 73.58 58.24 75.51 64.91 69.23 55.10 55.17 63.20 62.03 64.15 74.55 65.81 77.33 62.64 66.06 66.67 65.87 54.29 65.12 69.77 71.43 71.43 81.25 61.63 70.00 67.61 60.42 65.38 63.89 70.67 68.42 55.36 70.18 K jcn_only_AA Nup358,I_chr3R_21078958_21079044 chr3R + chr3R_21078958_21079044 chr3R_21078958_21079013 chr3R_21078858_21078957;chr3R_21079045_21079144 100.00 100.00 100.00 100.00 100.00 100.00 99.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.25 100.00 99.09 100.00 100.00 98.53 100.00 98.88 100.00 98.51 98.48 100.00 96.30 98.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.98 96.49 100.00 100.00 100.00 99.36 100.00 100.00 98.25 100.00 96.30 100.00 97.50 96.88 100.00 K intron_retention foi,I_chr3L_8524905_8524976 chr3L + chr3L_8521898_8523659 chr3L_8521897_8521898;chr3L_8523659_8523660 chr3L_8521889_8521897;chr3L_8523660_8524249 33.33 NA 25.00 33.33 NA 15.38 32.00 35.00 30.77 NA 23.08 30.00 NA NA 25.00 44.44 41.67 22.22 37.50 20.51 28.57 47.62 NA 33.33 NA NA 41.67 NA 58.62 NA 24.00 NA NA 48.15 NA NA NA NA NA NA 60.00 28.00 NA NA NA NA NA 55.00 34.62 NA NA NA NA NA 41.67 NA NA 53.85 K intron_retention CG3415 chrX + chrX_16166262_16166557 chrX_16166261_16166262;chrX_16166557_16166558 chrX_16165474_16166261;chrX_16166558_16167858 1.61 2.16 2.08 3.28 1.15 2.41 5.75 0.87 2.17 3.03 0.00 2.05 4.84 8.47 1.82 0.00 0.00 5.19 1.47 2.66 2.35 0.62 0.99 1.04 1.65 0.00 4.55 1.38 0.00 0.00 4.62 2.86 0.00 4.58 0.00 0.89 1.31 0.00 2.17 4.29 0.00 3.14 0.00 1.31 1.74 1.57 0.00 3.39 3.45 1.31 1.61 4.95 1.75 1.44 2.13 1.54 0.98 0.00 K cassette Zn72D,RF_chr3L_16100887_16102721,I_chr3L_16105199_16105253 chr3L - chr3L_16104982_16105431 chr3L_16104982_16105097;chr3L_16105199_16105431 chr3L_16105098_16105198 chr3L_16103583_16104981;chr3L_16105432_16105487 92.00 96.43 94.12 83.64 95.24 96.77 76.79 98.21 86.42 88.24 84.62 88.14 96.55 92.11 91.67 97.92 95.00 81.82 88.89 88.00 82.61 97.44 92.98 93.75 70.00 62.96 96.43 96.55 80.00 100.00 89.66 90.00 100.00 87.10 95.24 86.67 90.20 91.18 90.00 97.87 86.67 91.07 96.30 96.30 100.00 100.00 96.77 100.00 91.80 96.55 90.38 90.00 92.00 94.74 82.05 100.00 91.67 96.43 K jcn_only_AA Rrp6,I_chr3R_10711208_10711300,I_chr3R_10711189_10711299 chr3R - chr3R_10711189_10711300 chr3R_10711208_10711300 chr3R_10711301_10711399;chr3R_10711108_10711188 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 2.13 0.00 0.00 4.69 0.00 0.00 2.38 2.38 4.00 0.00 1.82 2.86 2.00 0.00 0.00 1.56 0.00 0.00 2.78 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 1.69 0.00 K intron_retention asteroid,RI_chr2L_1082666_1082719 chr2L + chr2L_1078569_1078624 chr2L_1078568_1078569;chr2L_1078624_1078625 chr2L_1077981_1078568;chr2L_1078625_1079065 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Tsp42Ee,RI_chr2R_2904593_2904783 chr2R + chr2R_2904593_2904783 chr2R_2904593_2904751 chr2R_2904518_2904592;chr2R_2904784_2904880 99.86 99.86 99.87 100.00 99.85 100.00 100.00 99.91 100.00 99.73 99.71 99.93 99.85 99.86 99.87 99.92 100.00 99.87 100.00 99.70 99.86 99.77 99.90 99.89 100.00 100.00 99.86 99.41 100.00 99.82 99.75 99.49 99.37 99.71 99.08 100.00 99.91 99.86 99.88 98.94 99.82 99.93 100.00 99.88 99.58 99.86 99.87 99.78 99.72 99.68 99.86 99.84 100.00 99.79 99.88 99.86 100.00 99.88 K intron_retention pum,I_chr3R_4898752_4906279,I_chr3R_4989351_5039481 chr3R - chr3R_4898752_4905466 chr3R_4898751_4898752;chr3R_4905466_4905467 chr3R_4898652_4898751;chr3R_4905467_4905683 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 3.33 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG6678 chr3R + chr3R_17713277_17713756 chr3R_17713314_17713756 chr3R_17713757_17714276;chr3R_17712862_17713276 81.48 NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 81.48 NA NA NA NA NA NA NA NA NA NA 65.38 78.57 NA NA NA NA NA NA 73.81 85.00 NA NA NA NA NA NA NA NA 93.75 K intron_retention Pax,RI_chr2L_19404683_19426205,RI_chr2L_19404823_19409403,I_chr2L_19419985_19423267,I_chr2L_19419985_19423278,I_chr2L_19419985_19423414,I_chr2L_19420081_19423267,I_chr2L_19420081_19423278 chr2L - chr2L_19420192_19423414 chr2L_19420191_19420192;chr2L_19423414_19423415 chr2L_19420186_19420191;chr2L_19423415_19423487 69.62 NA NA 63.64 NA NA 90.00 NA 66.67 NA NA 46.15 NA NA NA 57.14 NA NA NA 70.59 NA 71.43 63.64 NA NA NA NA NA NA 61.54 NA NA NA 75.00 75.00 NA NA NA NA 66.67 NA NA NA 80.00 NA 70.00 NA 81.82 69.23 NA NA NA NA NA NA NA NA NA K intron_retention CG8417,I_chr3R_5585448_5585511 chr3R + chr3R_5585448_5585571 chr3R_5585447_5585448;chr3R_5585571_5585572 chr3R_5585348_5585447;chr3R_5585572_5585611 0.00 0.00 NA 0.00 NA NA 0.00 0.00 2.33 NA 0.00 6.90 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 7.69 0.00 15.00 NA NA 0.00 NA 0.00 0.00 5.56 0.00 0.00 NA 3.57 0.00 0.00 NA 0.00 0.00 NA 0.00 9.52 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention CG10732,I_chr3L_13438999_13439071 chr3L + chr3L_13438740_13438835 chr3L_13438739_13438740;chr3L_13438835_13438836 chr3L_13437468_13438739;chr3L_13438836_13438998 90.00 96.67 84.00 89.47 89.47 83.33 93.33 89.66 92.16 85.19 93.75 94.87 94.74 90.00 90.00 80.77 93.33 94.74 94.44 80.00 89.47 90.57 96.08 93.02 90.70 100.00 90.24 72.73 84.13 97.44 95.24 94.29 87.18 86.11 96.55 100.00 85.48 88.89 93.65 89.83 97.14 85.11 95.00 97.44 84.44 86.67 88.46 85.88 94.29 89.13 91.84 95.45 92.59 85.71 85.71 88.00 87.50 88.89 K jcn_only_AA Tif-IA chr2L + chr2L_22250315_22250432 chr2L_22250315_22250371 chr2L_22250120_22250314;chr2L_22250433_22250483 96.27 98.04 98.08 98.78 94.12 98.18 99.29 93.95 98.22 100.00 91.25 96.25 98.44 96.27 96.53 95.56 95.24 91.92 97.69 96.24 95.89 98.33 96.23 95.68 96.88 95.76 91.00 87.78 91.53 95.06 90.00 98.15 91.30 95.63 95.05 82.89 98.11 96.40 96.81 97.92 100.00 96.46 91.94 96.74 88.89 97.67 95.12 100.00 96.04 97.33 97.65 97.92 96.10 92.59 96.64 97.50 97.32 94.81 K jcn_only_AD CG5830,I_chr3L_15996923_15996998 chr3L - chr3L_15997175_15997669 chr3L_15997175_15997448 chr3L_15996999_15997174;chr3L_15997670_15997711 100.00 100.00 100.00 97.22 100.00 100.00 94.74 100.00 100.00 NA 100.00 96.49 97.96 100.00 97.96 98.65 95.35 100.00 98.00 98.04 100.00 95.35 100.00 NA 100.00 100.00 NA 100.00 96.43 100.00 100.00 92.59 95.16 100.00 97.92 100.00 NA NA 100.00 97.87 96.55 96.61 100.00 100.00 NA 100.00 96.55 96.72 97.85 100.00 100.00 NA NA NA 95.92 NA NA 98.18 K intron_retention eIF-4E,RI_chr3L_9394049_9394139,RI_chr3L_9394054_9394756,I_chr3L_9394308_9394756,RI_chr3L_9394468_9394631,I_chr3L_9394468_9394659,I_chr3L_9394468_9395155,I_chr3L_9394468_9395240,I_chr3L_9394468_9395446,I_chr3L_9394685_9394756,RI_chr3L_9394707_9395016,RI_chr3L_9394707_9395198,I_chr3L_9394707_9395309,I_chr3L_9394819_9394884,I_chr3L_9394819_9395016,I_chr3L_9394819_9395198,I_chr3L_9394819_9395379 chr3L - chr3L_9394054_9394139 chr3L_9394053_9394054;chr3L_9394139_9394140 chr3L_9393954_9394053;chr3L_9394140_9394239 0.56 1.05 0.00 1.06 0.00 0.00 0.00 1.01 1.27 0.00 0.00 1.37 1.48 0.00 1.66 0.71 0.80 0.60 0.00 1.11 0.00 1.49 0.00 0.93 0.00 2.30 1.20 2.34 1.10 0.00 0.00 0.00 1.06 1.99 0.00 0.00 0.93 1.28 0.50 0.98 1.22 0.56 0.00 0.00 1.43 0.00 0.56 1.72 0.99 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.68 K alternative_acceptor CG9396,CG16790,RI_chr3R_5395693_5395764,CG9399,I_chr3R_5403032_5403329 chr3R - chr3R_5395693_5395764 chr3R_5395713_5395764 chr3R_5395765_5395827;chr3R_5395636_5395692 76.19 NA NA NA NA NA NA NA NA NA 66.67 88.89 NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA 85.71 NA NA NA NA NA NA 66.67 NA NA NA 87.50 NA NA NA 88.89 NA K intron_retention CG34132 chr2L + chr2L_7885805_7885876 chr2L_7885804_7885805;chr2L_7885876_7885877 chr2L_7885488_7885804;chr2L_7885877_7886139 0.00 1.79 0.00 2.27 0.00 0.00 1.09 0.00 1.59 0.00 0.00 1.52 0.00 0.00 1.15 2.26 0.00 0.00 0.00 1.25 0.00 NA 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.94 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 1.64 3.12 0.00 3.03 0.00 0.00 1.00 0.00 0.00 0.00 K jcn_only_AA klett chrX - chrX_21497280_21497339 chrX_21497298_21497339 chrX_21497340_21497917;chrX_21497037_21497279 0.00 0.50 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.76 0.92 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.93 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 K alternative_donor MED1 chr3L - chr3L_21623014_21624037 chr3L_21623014_21624032 chr3L_21621425_21623013;chr3L_21624038_21625939 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 NA 96.15 100.00 90.91 100.00 100.00 NA 100.00 100.00 96.77 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 90.00 100.00 98.77 100.00 96.55 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.78 98.55 100.00 98.96 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_last_exon Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8107881_8110480 chr2L_8107881_8109296 chr2L_8110481_8116501 chr2L_8109297_8109458 chr2L_8107748_8107880 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 99.35 100.00 100.00 100.00 100.00 100.00 98.39 98.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.23 K intron_retention Ark,I_chr2R_12909344_12909416,RI_chr2R_12912984_12913058 chr2R + chr2R_12913186_12913249 chr2R_12913185_12913186;chr2R_12913249_12913250 chr2R_12913059_12913185;chr2R_12913250_12913949 0.00 0.00 0.00 0.00 2.78 0.00 0.00 5.08 3.16 0.00 0.00 0.00 10.00 0.00 0.00 0.00 6.12 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 4.62 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.02 0.00 0.00 0.00 0.00 0.00 0.00 5.66 0.00 1.82 0.00 0.00 0.00 0.00 0.00 3.77 4.76 K jcn_only_AA I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_927771_929704,CG32021,RI_chr4_928193_928245,I_chr4_928482_929704,noncoding_20815,I_chr4_929811_932812 chr4 - chr4_928482_929704;chr4_927771_929704 chr4_928551_929704 chr4_929705_929804;chr4_927741_927770 64.28 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 68.57 NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor RpL14 chr3L + chr3L_8594138_8594413 chr3L_8594238_8594413 chr3L_8594414_8594515;chr3L_8594108_8594137 2.65 3.23 1.72 1.41 1.61 2.06 3.09 1.95 2.30 2.67 0.74 3.55 1.35 2.00 1.81 6.15 1.67 1.77 2.26 3.91 1.80 2.65 10.61 5.19 5.88 2.21 16.67 8.16 6.52 1.23 15.71 2.01 1.01 1.69 1.54 5.45 6.25 8.16 5.26 1.28 2.94 1.11 1.06 4.11 2.50 4.76 7.59 2.86 2.12 6.10 11.11 6.76 1.27 15.00 1.13 8.33 3.62 1.70 N intron_retention Tpi chr3R - chr3R_25959817_25959887 chr3R_25959816_25959817;chr3R_25959887_25959888 chr3R_25959232_25959816;chr3R_25959888_25959972 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA endos,I_chr3L_14024099_14024488,I_chr3L_14024103_14024158,I_chr3L_14024103_14024546,noncoding_12505,I_chr3L_14024496_14024546 chr3L - chr3L_14024103_14024488 chr3L_14024158_14024488 chr3L_14024489_14024495;chr3L_14024003_14024102 3.59 3.31 3.40 7.08 3.85 3.68 6.18 4.88 2.11 4.65 3.50 13.71 2.94 0.72 3.65 3.59 3.90 1.94 3.83 3.70 2.55 7.08 3.15 4.00 4.05 9.52 0.54 2.56 2.99 3.12 3.05 7.47 7.45 3.21 0.94 12.73 3.91 3.09 1.44 3.66 6.38 2.66 2.90 4.03 7.17 7.11 1.68 8.93 2.11 3.27 0.85 3.12 2.04 5.71 4.40 2.90 2.65 7.19 K jcn_only_AD None chrU + chrU_1178980_1179256 chrU_1179201_1179256 96.83 98.04 96.79 94.29 99.44 96.86 97.25 97.60 95.49 98.39 94.55 95.91 97.26 96.46 97.96 96.50 97.23 98.12 96.90 95.76 97.93 95.00 92.57 95.91 93.40 94.03 97.73 96.08 97.63 97.44 96.62 92.50 97.17 98.25 96.83 98.35 97.39 95.61 97.37 97.55 96.05 95.60 95.79 97.04 92.91 95.11 97.74 99.19 96.74 91.53 100.00 93.08 95.05 91.40 96.23 97.18 98.13 98.12 K intron_retention CycD,I_chrX_15803256_15803313 chrX - chrX_15801625_15801686 chrX_15801624_15801625;chrX_15801686_15801687 chrX_15800855_15801624;chrX_15801687_15801824 2.70 3.45 6.00 4.05 3.92 5.88 2.60 4.44 0.91 4.88 4.26 5.88 4.55 0.00 5.00 2.41 2.56 3.77 7.27 3.81 2.22 11.63 4.71 0.00 0.00 3.39 5.33 15.38 14.29 2.13 0.00 0.00 1.72 4.40 2.56 0.00 3.17 6.82 2.63 5.41 2.94 0.95 0.00 0.00 8.33 0.00 0.00 0.00 6.25 2.56 2.22 2.13 2.13 0.00 0.00 0.00 2.70 3.57 K multi_cassette CG30118,I_chr2R_14320281_14325712,I_chr2R_14325118_14325712 chr2R - chr2R_14320281_14325712 chr2R_14320281_14325079;chr2R_14325118_14325444;chr2R_14325483_14325712 chr2R_14325080_14325117;chr2R_14325445_14325482 chr2R_14320181_14320280;chr2R_14325713_14325780 83.33 100.00 80.00 90.00 NA NA 55.56 100.00 85.71 NA NA 100.00 NA 80.00 80.00 87.50 NA 100.00 100.00 80.00 NA 62.50 80.00 83.33 NA NA 100.00 71.43 NA NA 70.00 80.00 85.71 100.00 NA NA 80.00 NA 83.33 87.50 NA 90.91 NA 50.00 80.00 90.00 80.00 90.00 78.57 75.00 83.33 NA NA 80.00 85.71 100.00 80.00 100.00 K intron_retention CG2691,noncoding_23539 chrX - chrX_13515390_13515451 chrX_13515389_13515390;chrX_13515451_13515452 chrX_13514957_13515389;chrX_13515452_13515586 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG9007,I_chr3L_13995402_13996269,I_chr3L_13995402_13996272,I_chr3L_13995402_13996296,I_chr3L_13995480_13996292,RI_chr3L_14010982_14011111 chr3L + chr3L_13995402_13996296;chr3L_13995402_13996292;chr3L_13995402_13996269 chr3L_13995402_13996272 chr3L_13995380_13995401;chr3L_13996297_13996360 2.56 NA 0.00 0.00 NA NA 3.23 2.38 2.94 NA NA 0.00 NA NA 4.76 2.08 NA NA 5.00 10.00 NA NA 5.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 8.00 NA NA NA NA NA NA 6.25 10.00 NA NA NA NA 0.00 2.56 NA NA NA NA NA 0.00 NA NA NA K alternative_acceptor CG7029 chr3R + chr3R_18614491_18615247 chr3R_18614491_18615214 chr3R_18614301_18614490;chr3R_18615248_18617722 78.95 72.73 80.56 92.86 95.00 66.67 74.19 75.00 88.64 86.67 82.61 76.60 75.00 78.95 82.61 85.00 78.95 85.00 85.71 80.70 95.45 75.38 71.74 72.73 85.71 90.91 85.19 86.36 73.81 87.80 80.00 65.22 91.49 80.85 84.00 82.93 70.00 76.00 74.47 66.10 75.00 84.44 78.95 61.11 65.62 78.12 66.67 78.18 88.24 86.36 68.42 80.00 65.52 84.62 76.67 73.68 52.17 74.36 K alternative_acceptor Lap1 chr2R + chr2R_10823524_10823631;chr2R_10823524_10823596 chr2R_10823524_10823599 chr2R_10823191_10823523;chr2R_10823632_10823803 14.29 0.00 12.50 10.53 NA 25.00 25.00 18.75 15.38 33.33 NA 20.00 0.00 0.00 0.00 15.38 NA 0.00 0.00 7.14 0.00 18.18 18.18 14.29 37.50 0.00 7.69 25.00 0.00 20.00 14.29 NA 8.33 12.50 33.33 18.18 14.29 28.57 18.18 11.11 NA 15.38 14.29 20.00 0.00 0.00 NA 6.67 21.43 NA 9.09 0.00 NA 20.00 0.00 NA NA 14.29 K intron_retention lolal,I_chr2R_14043671_14043736,I_chr2R_14043671_14043740,I_chr2R_14043671_14043901,RI_chr2R_14043671_14044082,I_chr2R_14043671_14044191,I_chr2R_14043671_14044461,I_chr2R_14043671_14045289,I_chr2R_14043671_14045344 chr2R - chr2R_14043671_14044260 chr2R_14043670_14043671;chr2R_14044260_14044261 chr2R_14043571_14043670;chr2R_14044261_14044291 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 90.91 100.00 NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 90.00 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 92.86 NA 100.00 NA NA NA NA NA NA NA N multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2816013;chr2R_2816342_2816577;chr2R_2816779_2817753 chr2R_2816014_2816341;chr2R_2816578_2816778 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA 100.00 NA NA 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA 100.00 NA NA K jcn_only_AA CG6479 chr3L - chr3L_17331819_17331895 chr3L_17331837_17331895 chr3L_17331896_17332200;chr3L_17331559_17331818 100.00 95.00 100.00 98.25 97.30 100.00 100.00 92.73 96.30 100.00 94.12 96.43 100.00 100.00 100.00 100.00 95.24 100.00 NA 98.59 NA 94.12 100.00 93.85 100.00 100.00 98.67 100.00 100.00 98.04 NA 100.00 96.30 100.00 100.00 100.00 96.10 NA 98.98 98.31 100.00 97.22 100.00 97.06 100.00 100.00 95.74 100.00 100.00 100.00 95.95 95.45 100.00 94.87 96.77 95.83 100.00 100.00 K intron_retention UbcD6 chr3R - chr3R_776969_777762 chr3R_776968_776969;chr3R_777762_777763 chr3R_776833_776968;chr3R_777763_777831 100.00 100.00 92.86 91.67 NA 90.00 100.00 91.67 100.00 NA 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 93.33 NA 92.86 100.00 100.00 100.00 100.00 100.00 NA 100.00 93.75 100.00 100.00 100.00 NA 100.00 100.00 NA 96.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 NA NA 100.00 90.00 100.00 91.67 100.00 K alternative_donor Crk,RI_chr4_231302_233315,I_chr4_231307_232253 chr4 + chr4_230975_231063 chr4_230989_231063 chr4_231064_231112;chr4_230956_230974 95.72 87.50 NA 95.45 NA NA 96.00 100.00 96.77 NA NA 100.00 92.31 100.00 NA 87.50 100.00 NA 100.00 93.75 NA NA NA NA NA NA NA NA NA NA NA NA NA 93.33 NA NA 100.00 NA NA NA NA 93.75 NA 100.00 NA NA NA NA 93.75 88.89 NA 88.89 NA NA 100.00 NA NA NA K intron_retention CG33111,noncoding_18661,I_chr3R_19627964_19628107,I_chr3R_19633752_19633821 chr3R - chr3R_19627964_19631481 chr3R_19627963_19627964;chr3R_19631481_19631482 chr3R_19627864_19627963;chr3R_19631482_19631580 0.00 0.00 NA 14.29 NA NA NA NA 4.35 NA NA 0.00 NA NA NA NA NA 12.50 NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA 0.00 5.56 NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA 0.00 6.25 NA 0.00 0.00 0.00 13.33 NA NA NA 0.00 NA 0.00 0.00 K intron_retention wdb,I_chr3R_23394314_23406731,I_chr3R_23394314_23406794,I_chr3R_23394314_23407159,RI_chr3R_23394314_23407186,I_chr3R_23394314_23407412,I_chr3R_23394314_23407715,I_chr3R_23394314_23407721,RI_chr3R_23406048_23406731,RI_chr3R_23406048_23406794,I_chr3R_23406048_23406928,RI_chr3R_23406048_23407402 chr3R - chr3R_23394314_23405878 chr3R_23394313_23394314;chr3R_23405878_23405879 chr3R_23394214_23394313;chr3R_23405879_23406047 7.14 6.67 3.12 13.51 7.14 17.65 5.13 15.69 6.35 NA 20.00 9.52 NA 0.00 0.00 4.55 0.00 5.56 13.04 9.76 14.81 5.22 5.13 0.00 12.50 0.00 7.69 NA 16.28 0.00 0.00 NA 10.53 10.87 9.09 3.92 5.56 0.00 7.14 3.64 0.00 8.47 9.52 15.15 NA 8.33 0.00 7.69 3.70 16.67 7.69 0.00 NA NA 14.29 NA NA 11.76 K intron_retention CG15321,I_chrX_9578185_9579504,I_chrX_9578185_9579582,I_chrX_9578185_9580671,RI_chrX_9578185_9581011 chrX - chrX_9578185_9579535 chrX_9578184_9578185;chrX_9579535_9579536 chrX_9578085_9578184;chrX_9579536_9579571 6.46 NA NA NA NA NA NA 5.00 14.29 NA NA 23.81 NA 0.00 NA 15.79 NA NA 7.69 6.25 NA NA 6.67 NA NA NA NA 15.38 0.00 0.00 NA NA 0.00 15.38 NA NA NA NA NA 3.23 NA 15.00 NA 0.00 NA NA NA 1.96 12.50 NA 13.33 NA NA NA NA NA NA 0.00 K intron_retention lic,CG2200 chrX + chrX_12986255_12986316 chrX_12986254_12986255;chrX_12986316_12986317 chrX_12986122_12986254;chrX_12986317_12986519 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.99 0.00 3.68 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.36 0.38 0.69 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 K jcn_only_AA Rab39 chrX + chrX_7629369_7629812 chrX_7629369_7629796 chrX_7628958_7629368;chrX_7629813_7630512 100.00 100.00 96.97 100.00 100.00 100.00 97.96 98.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 95.65 100.00 100.00 NA 100.00 100.00 97.22 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 NA 98.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 K alternative_donor pelo,I_chr2L_9707821_9708144,I_chr2L_9707891_9708144,I_chr2L_9708081_9708144 chr2L + chr2L_9708081_9708144;chr2L_9706747_9708144;chr2L_9707821_9708144 chr2L_9707891_9708144 chr2L_9708145_9708244;chr2L_9706647_9706746 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention l(3)L1231,RI_chr3R_10475091_10481172 chr3R - chr3R_10475091_10481181 chr3R_10475090_10475091;chr3R_10481181_10481182 chr3R_10474991_10475090;chr3R_10481182_10481272 0.00 NA 0.00 6.25 0.00 0.00 0.00 4.35 0.00 7.14 0.00 5.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 8.00 NA NA NA 9.09 NA 0.00 NA 15.79 0.00 NA 6.45 0.00 NA NA 0.00 NA 0.00 10.00 NA 5.13 0.00 NA NA NA NA 5.88 2.94 NA 6.67 0.00 NA NA 0.00 NA NA NA K jcn_only_AA CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2815657_2816013;chr2R_2815654_2816013 chr2R_2815768_2816013 chr2R_2816014_2816113;chr2R_2815599_2815653 24.59 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 29.17 NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor alpha-Man-I,I_chrX_10218352_10219759,I_chrX_10218390_10219759 chrX - chrX_10218390_10219816;chrX_10218390_10219708;chrX_10218390_10219846;chrX_10218390_10219759 chrX_10218390_10219823 chrX_10218290_10218389;chrX_10219847_10219859 25.00 20.00 NA 33.33 NA 14.29 16.67 33.33 38.46 NA 16.67 26.67 22.22 28.57 33.33 25.00 16.67 14.29 33.33 30.00 NA 40.00 40.00 16.67 NA 28.57 0.00 NA NA 16.67 50.00 NA 0.00 27.27 20.00 25.00 NA NA 33.33 50.00 NA 22.22 14.29 NA NA 33.33 NA 20.00 23.08 NA 16.67 40.00 40.00 NA 22.22 NA 25.00 33.33 K intron_retention CG9153,Myo61F chr3L + chr3L_1314321_1314472 chr3L_1314320_1314321;chr3L_1314472_1314473 chr3L_1314158_1314320;chr3L_1314473_1314709 37.21 27.59 31.94 38.81 33.33 33.33 52.33 39.76 38.46 43.75 37.78 40.00 37.50 39.29 40.00 32.65 31.82 40.82 39.68 35.09 38.46 61.90 21.70 25.33 32.56 40.48 29.17 37.50 43.75 27.14 31.63 48.00 33.33 35.42 41.18 61.54 30.89 33.33 37.21 47.01 42.31 34.65 50.00 31.08 31.03 38.78 27.91 45.10 37.17 26.87 40.85 34.00 26.53 42.42 40.30 28.21 36.00 28.07 K intron_retention Nak chr2L - chr2L_18962834_18962884 chr2L_18962833_18962834;chr2L_18962884_18962885 chr2L_18962646_18962833;chr2L_18962885_18963115 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA 93.33 100.00 NA NA NA 100.00 92.31 NA 100.00 NA 100.00 NA NA NA NA 100.00 100.00 100.00 NA NA NA 91.67 100.00 NA NA K cassette Bsg25D chr2L - chr2L_5275781_5276511 chr2L_5275781_5276287;chr2L_5276369_5276511 chr2L_5276288_5276368 chr2L_5274019_5275780;chr2L_5276512_5276731 2.08 2.86 0.00 0.00 4.76 0.00 3.23 2.78 1.43 0.00 0.00 2.38 0.00 0.00 0.00 4.55 6.25 5.00 0.00 2.33 0.00 2.33 1.89 0.00 6.67 5.56 2.17 2.70 7.69 0.00 0.00 0.00 3.85 2.17 0.00 3.57 3.64 3.57 2.00 0.00 0.00 1.82 0.00 2.70 0.00 0.00 3.12 4.00 2.38 3.23 2.63 0.00 NA 5.26 0.00 0.00 0.00 3.45 K intron_retention CG15012 chr3L - chr3L_4292010_4292069 chr3L_4292009_4292010;chr3L_4292069_4292070 chr3L_4291899_4292009;chr3L_4292070_4292320 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 1.98 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.76 0.49 0.00 0.24 0.29 0.00 0.53 0.43 0.39 0.99 0.00 0.91 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 K cassette Stlk chr2R + chr2R_448295_450349 chr2R_448295_448459;chr2R_448565_450349 chr2R_448460_448564 chr2R_448219_448294;chr2R_450350_450581 6.25 NA 6.67 4.76 NA 5.88 6.45 6.25 5.88 NA 11.76 9.68 20.00 6.25 6.25 4.76 0.00 NA 6.45 5.26 0.00 NA 4.76 NA NA NA NA NA NA NA 22.22 NA NA 8.57 NA NA NA NA NA 11.76 NA 3.85 16.67 4.35 NA NA NA NA 12.12 NA 6.25 NA NA NA 4.76 NA 6.25 NA K intron_retention C3G chrX - chrX_6680846_6681128 chrX_6680845_6680846;chrX_6681128_6681129 chrX_6680189_6680845;chrX_6681129_6681281 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 3.49 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Dscam,I_chr2R_3212234_3216793,F_chr2R_3219886_3228832,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3214290_3216793 chr2R_3214289_3214290;chr2R_3216793_3216794 chr2R_3214229_3214289;chr2R_3216794_3216856 2.66 6.67 16.00 0.00 NA 4.88 23.53 0.00 9.76 NA NA 4.76 4.35 5.26 10.00 7.41 NA NA 4.76 3.85 11.11 2.94 2.22 0.00 0.00 0.00 5.26 9.09 4.65 4.17 0.00 0.00 4.00 4.55 0.00 11.76 4.65 8.33 1.85 1.75 0.00 4.08 0.00 0.00 0.00 2.38 0.00 1.64 5.77 0.00 2.04 0.00 0.00 0.00 0.00 0.00 4.35 0.00 K intron_retention cals,I_chr4_1139644_1142084,RI_chr4_1141233_1142084 chr4 - chr4_1136521_1136581 chr4_1136520_1136521;chr4_1136581_1136582 chr4_1135886_1136520;chr4_1136582_1136705 0.00 8.70 0.00 7.69 NA 0.00 15.79 3.51 7.14 NA NA 9.52 0.00 6.67 NA 3.28 5.56 7.14 7.14 5.13 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 0.00 0.00 8.93 0.00 NA NA NA NA 0.00 NA 13.95 0.00 0.00 NA 0.00 0.00 0.00 5.36 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 K intron_retention Lsd-1,CG10375 chr3R + chr3R_19592030_19592095 chr3R_19592029_19592030;chr3R_19592095_19592096 chr3R_19591852_19592029;chr3R_19592096_19592453 19.88 NA NA NA NA NA NA NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA 28.57 NA NA NA 7.14 NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RI_chrX_11473566_11473702,roX2,noncoding_23149,I_chrX_11475074_11475402 chrX + chrX_11473433_11473702 chrX_11473432_11473433;chrX_11473702_11473703 chrX_11473419_11473432;chrX_11473703_11473726 58.33 NA NA NA NA NA 63.64 75.00 64.71 NA NA 58.33 NA NA NA 50.00 NA NA 50.00 50.00 NA NA NA NA NA NA NA NA NA NA 57.14 NA NA 63.16 NA NA NA NA NA 64.29 NA 42.86 54.55 NA NA 45.45 NA NA 68.75 NA NA NA NA NA 62.50 NA NA NA K alternative_donor I_chrX_15680663_15680821,Rhp chrX + chrX_15682991_15684279 chrX_15683146_15684279 chrX_15684280_15684421;chrX_15682909_15682990 55.56 NA NA NA NA NA 55.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG2926,I_chr3R_1410401_1410501,I_chr3R_1410558_1410893,I_chr3R_1410841_1410893 chr3R - chr3R_1410401_1410893 chr3R_1410558_1410893 chr3R_1410894_1410993;chr3R_1410301_1410400 0.00 0.00 0.00 4.35 0.00 0.00 2.38 0.00 1.25 7.14 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 NA 1.33 1.39 NA 0.00 3.85 0.00 NA 0.00 0.00 NA 0.00 K intron_retention Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CE_chr2R_11826384_11826741,I_chr2R_11826763_11826990,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824089_11824525 chr2R_11824088_11824089;chr2R_11824525_11824526 chr2R_11823989_11824088;chr2R_11824526_11824611 86.67 85.37 90.00 83.72 86.67 90.91 100.00 84.38 89.02 81.82 88.89 97.80 95.83 92.31 85.71 92.86 92.00 95.24 95.45 82.08 78.95 97.67 79.45 78.57 94.87 85.71 94.87 91.67 97.44 86.49 84.00 82.93 90.00 90.91 88.00 78.18 75.32 86.05 89.53 86.11 88.89 88.68 85.00 82.69 93.06 83.67 82.05 79.17 88.00 88.10 83.67 92.59 72.97 83.33 87.88 81.58 79.63 77.50 K alternative_donor CG3774,I_chrX_6114220_6114292 chrX + chrX_6114220_6115412 chrX_6114451_6115412 chrX_6115413_6116709;chrX_6114120_6114219 96.88 88.89 87.50 97.50 100.00 95.00 92.59 97.44 97.62 90.00 93.75 100.00 93.33 100.00 95.83 96.77 100.00 100.00 96.00 95.83 94.74 100.00 96.00 95.00 100.00 95.83 100.00 92.31 100.00 94.12 95.83 93.33 100.00 96.88 100.00 100.00 100.00 93.33 100.00 100.00 88.00 97.37 100.00 100.00 94.44 95.65 94.44 96.30 97.44 91.67 100.00 100.00 100.00 100.00 100.00 93.75 100.00 85.71 K intron_retention CG9065 chrX - chrX_14978596_14978658 chrX_14978595_14978596;chrX_14978658_14978659 chrX_14978386_14978595;chrX_14978659_14978664 0.00 0.00 0.00 3.12 0.00 0.00 2.74 0.00 4.62 0.00 0.00 1.06 3.33 4.00 3.03 4.65 5.26 0.00 1.56 1.80 0.00 0.00 0.00 5.41 0.00 6.45 0.00 0.00 14.75 0.00 0.00 1.67 2.22 2.44 0.00 0.00 0.00 2.86 0.00 0.00 5.77 1.83 0.00 0.00 0.00 0.00 0.00 0.00 1.68 0.00 6.06 2.17 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG12054 chr3R + chr3R_27046565_27051534 chr3R_27046565_27046634;chr3R_27047188_27051534 chr3R_27046635_27047187 chr3R_27046436_27046564;chr3R_27051535_27051798 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 97.06 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 98.90 100.00 97.67 98.28 100.00 95.45 97.50 95.45 95.83 100.00 97.06 100.00 100.00 100.00 100.00 100.00 97.44 98.25 100.00 98.25 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.82 100.00 98.18 100.00 100.00 100.00 97.96 100.00 100.00 100.00 K jcn_only_AA CG5794,I_chr3R_20475643_20475715 chr3R - chr3R_20462920_20463019 chr3R_20462947_20463019 chr3R_20463020_20463357;chr3R_20462180_20462919 35.03 33.33 20.83 22.95 46.15 24.00 39.02 35.19 43.48 40.00 37.50 34.62 28.12 17.24 54.17 26.67 48.57 41.94 42.31 30.99 26.67 47.62 39.53 NA 41.67 21.95 27.03 NA 28.12 47.62 25.71 NA 34.88 37.50 NA 40.00 33.33 NA 37.14 40.00 NA 27.78 48.28 31.03 38.46 34.29 38.46 32.00 40.00 33.33 22.86 54.55 30.77 NA 34.21 31.82 46.15 42.11 K intron_retention Xe7,RI_chr3R_1493064_1493414,CRI_chr3R_1493111_1493414 chr3R - chr3R_1493111_1493414 chr3R_1493110_1493111;chr3R_1493414_1493415 chr3R_1493105_1493110;chr3R_1493415_1493514 70.00 NA NA 60.87 NA NA 66.67 83.33 76.47 NA NA 91.67 70.00 NA NA 41.67 NA NA NA 69.23 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA 73.33 NA 78.57 NA NA NA NA NA 30.77 88.89 NA NA NA NA NA NA NA NA NA K jcn_only_AD Cg25C,I_chr2L_5029811_5029873 chr2L + chr2L_5029811_5030136;chr2L_5029637_5030136 chr2L_5029747_5030136 chr2L_5030137_5030237;chr2L_5029620_5029636 11.80 5.26 9.84 16.67 6.52 4.88 20.90 8.33 13.19 12.50 5.71 7.94 14.43 11.76 8.86 9.88 2.33 9.38 11.84 10.32 3.09 12.82 17.72 8.33 26.92 16.13 16.67 14.71 27.59 NA 6.15 9.09 10.91 9.09 5.26 28.57 25.71 19.57 10.42 16.47 14.89 10.67 3.77 21.79 13.33 16.88 4.76 13.43 10.73 26.32 5.80 37.50 9.64 13.64 1.98 12.82 19.15 15.38 K intron_retention CG2147,Trxr-1 chrX + chrX_8134918_8134971 chrX_8134917_8134918;chrX_8134971_8134972 chrX_8134707_8134917;chrX_8134972_8135520 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 4.17 0.00 12.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3L_12398261_12403200,Gap69C chr3L - chr3L_12409105_12409374 chr3L_12409104_12409105;chr3L_12409374_12409375 chr3L_12409045_12409104;chr3L_12409375_12409579 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Sap-r,E_chr3R_26711286_26714646,I_chr3R_26712627_26714606,RI_chr3R_26713323_26714382 chr3R - chr3R_26714462_26714606 chr3R_26714461_26714462;chr3R_26714606_26714607 chr3R_26714398_26714461;chr3R_26714607_26714706 1.85 1.50 1.42 1.66 1.85 1.43 1.83 1.68 1.92 2.23 1.24 1.73 1.21 2.10 1.49 1.36 2.31 1.41 1.98 1.78 2.29 1.85 1.76 2.50 3.21 1.91 2.09 1.71 2.11 2.29 3.44 2.00 1.08 1.69 1.92 1.06 3.07 2.64 1.91 2.15 0.82 2.22 1.32 1.96 1.33 1.49 2.30 1.83 1.75 2.91 1.97 3.06 0.78 1.90 1.69 2.58 1.39 0.50 K intron_retention Nup153,I_chrX_16495232_16495296 chrX + chrX_16493673_16493756 chrX_16493672_16493673;chrX_16493756_16493757 chrX_16493283_16493672;chrX_16493757_16494346 24.38 21.43 26.32 32.08 27.59 0.00 25.00 28.30 22.97 5.56 8.33 20.31 24.24 25.00 28.57 23.53 26.92 35.71 21.05 15.38 16.00 16.67 20.00 20.83 35.29 25.00 46.43 26.32 45.71 10.53 32.35 23.08 14.29 24.53 21.43 46.15 17.24 26.32 14.29 14.00 42.86 24.07 25.00 29.41 12.50 16.67 NA 25.00 19.67 30.77 25.00 30.00 NA NA 29.17 NA NA 15.38 K intron_retention Nc73EF,F_chr3L_16952838_16955936,CE_chr3L_16952842_16955936,I_chr3L_16952985_16955434,I_chr3L_16953768_16954599 chr3L + chr3L_16952985_16954599 chr3L_16952984_16952985;chr3L_16954599_16954600 chr3L_16952885_16952984;chr3L_16954600_16954699 4.35 2.22 10.34 9.09 4.35 5.88 12.24 7.55 11.76 4.35 12.24 2.06 6.06 0.00 8.16 13.79 0.00 0.00 9.09 4.62 8.70 0.00 5.33 0.00 3.92 2.70 3.90 6.00 0.00 0.00 6.45 0.00 2.70 10.87 3.57 4.44 2.70 2.90 3.90 6.67 4.35 4.48 11.54 8.96 0.00 3.03 4.65 7.14 6.35 4.35 4.88 2.70 0.00 3.70 7.32 4.17 6.25 0.00 K intron_retention mld chr3R + chr3R_20445827_20445891 chr3R_20445826_20445827;chr3R_20445891_20445892 chr3R_20441773_20445826;chr3R_20445892_20445957 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 5.71 0.00 0.00 NA 0.00 0.00 0.00 2.78 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA N cassette CaMKII,RI_chr4_1067398_1067889,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1065875_1068078 chr4_1065875_1067889;chr4_1068017_1068078 chr4_1067890_1068016 chr4_1065782_1065874;chr4_1068079_1068201 100.00 100.00 100.00 77.78 100.00 100.00 89.61 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Syx4,I_chrX_2635555_2635621,I_chrX_2636831_2636971 chrX - chrX_2633266_2633329 chrX_2633265_2633266;chrX_2633329_2633330 chrX_2633238_2633265;chrX_2633330_2633569 26.83 23.26 31.71 17.65 24.14 21.43 48.48 34.00 26.56 21.43 40.00 28.85 36.36 17.14 32.65 26.83 28.00 40.00 28.21 32.73 34.38 35.29 27.91 24.56 38.71 58.82 34.21 36.84 50.00 18.52 22.73 40.00 17.24 31.25 19.57 57.14 18.97 18.18 28.00 10.00 34.88 33.77 27.27 16.67 19.57 28.92 15.38 24.39 23.33 18.84 22.37 16.28 10.71 23.08 26.92 16.22 12.50 19.23 K alternative_donor CG5537,I_chr3L_5804425_5804485 chr3L + chr3L_5805019_5805164 chr3L_5805080_5805164 chr3L_5805165_5805330;chr3L_5804976_5805018 92.68 96.23 92.31 93.33 100.00 94.44 92.31 93.15 92.39 89.47 97.50 86.90 90.70 100.00 94.23 91.53 86.49 97.92 95.92 92.86 95.24 70.37 91.80 95.71 95.24 92.59 93.22 92.68 95.65 86.00 98.31 91.11 84.75 89.55 90.00 96.00 98.39 97.50 88.16 89.23 84.00 88.31 92.31 100.00 83.82 94.12 93.94 93.75 95.12 88.89 90.41 97.44 90.57 90.67 92.00 95.77 93.48 88.46 K cassette l(1)G0232,I_chrX_9538401_9552678,I_chrX_9538401_9552777 chrX - chrX_9538401_9552879 chrX_9538401_9552033;chrX_9552200_9552879 chrX_9552034_9552199 chrX_9538301_9538400;chrX_9552880_9552947 0.00 NA 0.00 2.27 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 3.23 1.67 0.00 NA NA NA NA 3.23 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 2.70 NA NA NA NA NA 2.78 NA NA NA K intron_retention CG6607,ana1 chr3R + chr3R_20354651_20354703 chr3R_20354650_20354651;chr3R_20354703_20354704 chr3R_20354471_20354650;chr3R_20354704_20355225 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 1.19 4.17 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.98 0.00 1.15 0.00 0.95 0.00 2.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CtBP chr3R + chr3R_8850752_8851110 chr3R_8850751_8850752;chr3R_8851110_8851111 chr3R_8850711_8850751;chr3R_8851111_8851987 72.73 NA NA 90.00 NA NA NA NA 64.29 NA NA 65.00 NA NA NA NA NA NA NA 76.92 NA 71.43 NA 72.73 77.78 NA NA 85.71 53.85 75.00 NA NA 50.00 NA NA NA 88.89 NA 83.33 83.33 NA 80.00 NA 69.23 NA NA NA NA 70.00 46.15 NA NA NA 63.64 NA NA NA NA K jcn_only_AD I_chr4_335584_340074,CG32850,I_chr4_338996_340074,RI_chr4_340294_340597 chr4 + chr4_335584_337018 chr4_335806_337018 chr4_337019_337135;chr4_335522_335583 59.98 NA NA NA NA NA NA 51.85 NA NA NA 60.87 NA NA NA 76.19 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA 59.09 NA NA NA NA NA NA 45.00 NA NA NA NA NA NA NA NA NA K intron_retention GlcAT-P,I_chr3L_11172482_11172633 chr3L - chr3L_11172482_11172633 chr3L_11172481_11172482;chr3L_11172633_11172634 chr3L_11172382_11172481;chr3L_11172634_11172733 91.29 83.33 77.78 100.00 90.00 NA 86.67 NA 100.00 NA NA 100.00 100.00 100.00 94.44 NA NA NA NA 94.12 NA 93.75 88.89 88.89 100.00 90.91 96.00 90.91 100.00 83.33 66.67 NA 88.89 100.00 NA NA 93.75 NA 91.67 83.33 100.00 94.74 88.89 NA NA NA NA 93.75 88.24 NA 90.00 NA 87.50 NA 90.91 NA 92.31 88.89 K intron_retention Lap1 chr2R + chr2R_10823996_10824051 chr2R_10823995_10823996;chr2R_10824051_10824052 chr2R_10823860_10823995;chr2R_10824052_10824341 2.27 5.00 0.00 9.09 0.00 NA 0.00 0.00 8.51 NA 0.00 5.88 4.76 0.00 NA 7.41 0.00 0.00 5.56 7.14 NA 3.23 2.27 6.67 5.00 0.00 7.69 0.00 7.14 0.00 15.79 0.00 8.33 0.00 0.00 19.05 0.00 0.00 0.00 5.00 NA 0.00 0.00 4.17 NA NA NA 0.00 5.71 NA 6.25 11.11 NA NA 0.00 NA NA NA K jcn_only_AA CG15881,RI_chr3L_19799338_19799394,RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19799338_19799405 chr3L_19799338_19799394 chr3L_19799238_19799337;chr3L_19799406_19799494 4.65 3.23 4.55 8.33 NA NA 11.54 0.00 10.17 NA 0.00 2.44 NA NA NA 7.69 NA 7.14 4.17 2.04 12.00 13.51 NA 3.12 NA NA 16.13 NA NA 4.17 10.00 12.00 2.22 3.12 5.00 NA 5.88 4.76 6.45 5.80 NA 2.94 NA 5.56 7.69 3.85 4.17 0.00 4.76 8.70 5.56 3.70 0.00 2.56 0.00 8.33 2.82 2.13 K jcn_only_AA pita,Rrp4 chr2R - chr2R_19437411_19437470 chr2R_19437415_19437470 chr2R_19437471_19438559;chr2R_19436488_19437410 100.00 100.00 100.00 99.08 100.00 100.00 98.53 97.35 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.83 98.70 100.00 100.00 100.00 100.00 98.97 100.00 98.89 98.91 98.59 100.00 100.00 100.00 100.00 100.00 98.18 97.26 100.00 100.00 98.41 99.08 99.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.99 99.12 99.34 96.84 98.59 100.00 100.00 100.00 97.27 98.11 99.33 K intron_retention Grip84 chrX - chrX_19455829_19456724 chrX_19455828_19455829;chrX_19456724_19456725 chrX_19455530_19455828;chrX_19456725_19457046 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention fw chrX - chrX_11889905_11889968 chrX_11889904_11889905;chrX_11889968_11889969 chrX_11889688_11889904;chrX_11889969_11890247 44.70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA 29.41 NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA K intron_retention hkl chr2L + chr2L_19047655_19047715 chr2L_19047654_19047655;chr2L_19047715_19047716 chr2L_19047420_19047654;chr2L_19047716_19047825 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.80 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 K intron_retention CG7609,I_chr3R_25574492_25574541 chr3R - chr3R_25570546_25570603 chr3R_25570545_25570546;chr3R_25570603_25570604 chr3R_25569906_25570545;chr3R_25570604_25570796 0.00 0.00 0.00 5.56 0.00 0.00 0.00 3.12 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 2.44 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20346714_20347206 chr3L_20346738_20347206 chr3L_20347207_20347505;chr3L_20346638_20346713 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K multi_cassette CG14995,I_chr3L_4095875_4097205,I_chr3L_4096047_4096903 chr3L - chr3L_4095875_4097506 chr3L_4095875_4095971;chr3L_4096068_4096903;chr3L_4096979_4097205;chr3L_4097335_4097506 chr3L_4095972_4096067;chr3L_4096904_4096978;chr3L_4097206_4097334 chr3L_4095775_4095874;chr3L_4097507_4097804 100.00 100.00 100.00 100.00 66.67 NA NA 100.00 100.00 80.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 90.91 100.00 93.75 80.00 87.50 75.00 100.00 87.50 83.33 100.00 100.00 83.33 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 87.50 NA 90.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 85.71 100.00 K alternative_donor CG4589,I_chr2R_20402394_20402462,I_chr2R_20402394_20402706 chr2R - chr2R_20402394_20402753;chr2R_20402394_20402785 chr2R_20402394_20402809 chr2R_20402294_20402393;chr2R_20402810_20402813 7.14 NA 10.00 11.11 NA 0.00 8.33 0.00 7.69 NA 0.00 0.00 0.00 0.00 12.50 7.14 20.00 20.00 11.11 7.69 0.00 NA NA NA NA 0.00 NA NA 20.00 NA 0.00 NA 0.00 0.00 NA NA NA NA NA 20.00 NA 8.33 14.29 NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 14.29 NA NA 16.67 K alternative_donor ben chrX + chrX_13890789_13892127;chrX_13890791_13892127;chrX_13891016_13892127;chrX_13890793_13892127;chrX_13890762_13892127;chrX_13890795_13892127;chrX_13890831_13892127;chrX_13890768_13892127;chrX_13890648_13892127 chrX_13890990_13892127 chrX_13892128_13892800;chrX_13890644_13890647 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 K intron_retention Hcs,I_chr3R_1303481_1304607 chr3R + chr3R_1301124_1301184 chr3R_1301123_1301124;chr3R_1301184_1301185 chr3R_1300689_1301123;chr3R_1301185_1301522 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 3.03 0.00 NA 3.23 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA K alternative_donor Treh,I_chr2R_16972565_16972702,I_chr2R_16975359_16975442,RI_chr2R_16975359_16975842,I_chr2R_16975364_16975842 chr2R + chr2R_16974443_16975285 chr2R_16974918_16975285 chr2R_16975286_16975358;chr2R_16974405_16974442 76.79 73.47 68.18 79.59 85.71 65.79 86.67 88.10 81.13 87.76 82.76 79.07 92.00 87.18 86.00 82.69 89.19 75.68 74.36 77.94 79.41 76.81 75.71 73.13 80.56 86.67 76.79 93.75 81.82 58.82 81.25 63.83 70.37 75.00 78.05 80.00 67.09 70.18 67.65 71.60 66.15 77.66 83.33 75.36 67.53 63.10 66.67 67.14 78.41 93.10 69.86 81.08 68.75 69.09 74.07 58.21 63.49 54.08 K alternative_donor CG3558,RI_chr2L_2995071_2997790 chr2L + chr2L_2993464_2993544;chr2L_2993444_2993544;chr2L_2993378_2993544 chr2L_2993410_2993544 chr2L_2993545_2994408;chr2L_2993028_2993377 2.25 2.33 5.77 2.44 8.57 2.44 1.00 1.85 3.36 0.00 4.76 1.19 1.89 3.64 6.12 1.10 2.17 2.56 3.23 1.98 5.56 1.49 4.00 0.00 0.00 0.00 5.41 0.00 7.89 1.43 0.00 2.00 1.16 1.83 0.00 2.38 2.86 3.12 0.00 1.01 1.64 3.09 5.13 6.15 2.50 2.53 0.00 0.76 1.94 0.00 6.98 3.03 7.14 NA 6.78 0.00 4.00 0.83 K intron_retention I_chr2R_6778098_6778140,CG12942 chr2R + chr2R_6783004_6783056 chr2R_6783003_6783004;chr2R_6783056_6783057 chr2R_6782698_6783003;chr2R_6783057_6783189 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 8.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_donor CG4239,I_chrX_16279725_16280317 chrX + chrX_16279721_16281003;chrX_16279725_16281003 chrX_16279372_16281003 chrX_16281004_16281322;chrX_16279353_16279371 93.62 91.67 100.00 95.56 88.89 91.67 89.66 95.56 90.00 NA 60.00 95.74 91.67 100.00 89.47 92.31 100.00 92.31 95.24 90.24 66.67 100.00 95.00 96.67 95.45 89.47 95.65 95.65 93.33 84.62 81.82 92.86 84.62 95.35 95.24 94.44 90.62 96.88 93.18 96.61 NA 93.48 92.86 90.91 NA 95.24 100.00 81.82 95.77 100.00 93.75 100.00 94.12 92.31 94.74 96.15 90.00 75.00 K intron_retention CG3077 chr2L - chr2L_2764442_2764504 chr2L_2764441_2764442;chr2L_2764504_2764505 chr2L_2764373_2764441;chr2L_2764505_2764573 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG11006,F_chr3L_12799159_12799339 chr3L + chr3L_12799438_12799952;chr3L_12799438_12799955;chr3L_12799438_12800078;chr3L_12799438_12799967 chr3L_12799438_12800192 chr3L_12799340_12799437;chr3L_12800193_12800930 97.73 NA NA 96.15 NA 100.00 NA 96.67 97.78 100.00 NA 100.00 NA NA NA NA NA NA NA 97.73 NA 85.19 95.00 96.67 100.00 NA NA 94.74 96.08 92.59 NA NA 97.53 NA 100.00 100.00 95.83 100.00 94.44 97.01 100.00 100.00 NA 96.00 95.35 91.67 NA 98.72 97.14 100.00 100.00 NA 100.00 NA NA 100.00 NA 97.73 K intron_retention m-cup chr3R - chr3R_12971778_12971841 chr3R_12971777_12971778;chr3R_12971841_12971842 chr3R_12971649_12971777;chr3R_12971842_12972385 0.00 0.00 7.69 0.00 0.00 0.00 8.70 0.00 9.76 NA NA 3.70 0.00 0.00 0.00 5.26 0.00 0.00 0.00 6.82 0.00 4.35 6.45 0.00 0.00 0.00 14.29 NA 11.76 0.00 27.27 10.00 NA 14.29 NA 0.00 0.00 0.00 3.12 10.81 4.76 5.26 NA 16.67 NA 0.00 8.70 0.00 5.71 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K alternative_donor Arf102F,RI_chr4_1144958_1145393,I_chr4_1152220_1152710,I_chr4_1152585_1152687 chr4 + chr4_1145520_1145575 chr4_1145524_1145575 chr4_1145576_1145637;chr4_1145453_1145519 0.00 0.00 0.00 0.51 0.00 0.00 1.25 0.00 0.00 0.00 0.00 1.56 0.00 1.01 0.00 0.00 0.00 0.00 0.95 1.11 0.00 0.00 0.00 0.00 3.03 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 2.00 0.00 0.00 6.52 0.97 1.02 0.00 0.00 0.98 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.00 0.00 1.41 1.03 0.83 K intron_retention itp chr2R + chr2R_20445223_20445552 chr2R_20445222_20445223;chr2R_20445552_20445553 chr2R_20444605_20445222;chr2R_20445553_20446461 0.00 0.00 0.00 2.44 0.00 0.00 3.45 3.85 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG7203,LKR,I_chr2L_7795654_7795717 chr2L - chr2L_7795654_7795774 chr2L_7795654_7795717 chr2L_7795554_7795653;chr2L_7795775_7795817 0.52 0.00 0.27 0.52 0.38 0.33 1.53 0.65 0.49 0.88 0.43 0.82 0.00 0.34 0.47 0.55 0.79 0.00 0.30 0.45 0.62 0.36 0.60 0.52 0.35 0.29 0.47 0.73 0.53 0.83 1.86 0.73 0.90 0.64 0.79 0.00 0.49 0.91 0.18 0.27 0.00 0.74 0.73 0.77 0.51 0.80 0.00 0.00 0.55 1.26 0.38 0.62 0.00 0.94 0.55 0.50 0.49 0.85 K alternative_donor E(Pc) chr2R + chr2R_7339889_7340897;chr2R_7339818_7340897 chr2R_7339807_7340897 chr2R_7340898_7340908;chr2R_7339722_7339806 14.29 NA NA 16.67 NA NA 11.11 44.44 28.57 11.11 NA 14.29 NA NA NA 37.50 NA NA NA 16.67 NA 12.50 25.00 12.50 NA NA NA 33.33 7.69 14.29 NA NA 33.33 NA 14.29 18.18 14.29 NA NA 9.09 NA 14.29 NA 16.67 NA 16.67 NA 12.00 42.86 NA 14.29 NA 0.00 NA NA NA NA 0.00 K intron_retention CG4699 chr3R + chr3R_11624133_11624445 chr3R_11624132_11624133;chr3R_11624445_11624446 chr3R_11623809_11624132;chr3R_11624446_11624758 97.14 96.77 100.00 94.34 86.67 96.15 100.00 98.33 94.59 97.62 97.06 98.31 100.00 97.06 97.92 96.77 100.00 96.30 97.44 98.70 100.00 99.11 98.08 92.00 96.55 93.94 97.96 100.00 95.00 97.56 97.37 92.31 95.86 98.15 98.11 94.87 93.33 88.89 98.25 100.00 98.28 97.56 100.00 95.92 100.00 95.00 100.00 95.08 95.18 92.50 97.87 96.55 97.14 92.31 97.56 96.67 96.55 92.22 K intron_retention CG5214,I_chr3R_7070385_7070508 chr3R + chr3R_7070769_7070842 chr3R_7070768_7070769;chr3R_7070842_7070843 chr3R_7070667_7070768;chr3R_7070843_7071382 0.97 1.27 0.00 3.85 0.00 0.00 0.00 2.34 0.92 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 1.89 2.07 1.53 2.30 0.00 2.37 0.00 3.33 0.70 4.27 0.00 0.00 1.20 2.61 7.37 1.06 1.68 2.48 1.85 5.08 0.97 0.00 1.59 0.54 1.69 1.16 1.61 1.11 2.04 0.60 2.11 0.79 1.18 0.00 0.68 0.00 0.62 K alternative_acceptor dnc,I_chrX_3150245_3150319,I_chrX_3150351_3152643 chrX + chrX_3226580_3228183 chrX_3226580_3228177 chrX_3226475_3226579;chrX_3228184_3228364 60.00 60.00 58.33 95.83 72.73 60.00 25.93 72.73 60.71 NA NA 75.00 50.00 66.67 57.89 81.25 35.71 46.67 4.35 78.12 45.45 18.18 52.94 60.00 NA 53.33 46.15 NA NA NA 71.43 NA 55.56 60.00 66.67 87.50 50.00 55.56 60.00 52.63 NA 62.50 60.00 NA NA NA 36.36 72.73 60.00 63.64 50.00 NA NA NA 65.00 NA NA 63.64 K intron_retention CG10882 chr2L - chr2L_2232189_2232256 chr2L_2232188_2232189;chr2L_2232256_2232257 chr2L_2231202_2232188;chr2L_2232257_2233047 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG14657 chr3R - chr3R_645633_646054 chr3R_645633_645780;chr3R_645989_646054 chr3R_645781_645988 chr3R_645516_645632;chr3R_646055_647174 17.65 18.52 11.11 14.29 16.67 25.00 38.71 27.27 25.86 25.00 9.09 14.58 90.48 20.00 19.35 15.62 29.41 16.13 37.50 26.83 23.53 33.33 7.69 21.21 4.17 9.38 16.28 16.67 18.18 10.53 21.43 NA 14.29 31.25 14.81 2.50 15.15 9.38 10.71 19.35 12.50 21.15 27.78 10.34 NA 11.54 16.00 25.00 26.83 21.21 21.05 22.73 8.70 13.64 21.62 17.65 10.53 15.38 K intron_retention Mocs1 chr3L + chr3L_11065511_11065661 chr3L_11065510_11065511;chr3L_11065661_11065662 chr3L_11064659_11065510;chr3L_11065662_11066454 59.69 47.06 66.67 68.00 87.50 58.33 68.00 38.10 50.00 40.00 NA 57.89 NA 63.64 53.33 77.78 NA 75.00 50.00 59.38 46.67 61.11 65.71 60.87 66.67 46.15 51.43 52.38 44.23 69.57 63.16 47.83 79.31 68.42 63.16 50.00 60.00 52.63 62.50 58.33 54.05 62.50 77.78 62.96 48.72 51.43 64.71 47.37 52.00 65.38 53.85 66.67 66.67 69.23 57.14 75.00 50.00 59.09 N jcn_only_AA CG17159,CG17162,noncoding_25215 chrXHet - chrXHet_66049_66121 chrXHet_66052_66121 chrXHet_66122_66324;chrXHet_64549_66048 34.88 NA 0.00 NA 0.00 52.17 27.78 33.33 34.62 NA NA 31.88 NA 36.00 25.71 46.15 NA 44.44 NA 36.99 NA 0.00 NA 27.50 NA NA NA NA NA 35.14 26.67 46.43 30.51 30.43 0.00 45.16 NA 0.00 45.16 40.58 NA 46.00 0.00 38.71 NA 23.53 53.33 44.29 28.89 52.00 46.43 40.74 NA NA 0.00 NA NA 36.36 K alternative_donor CG12753,CG14894,RI_chr3R_12268071_12268135,RI_chr3R_12268071_12268141,RI_chr3R_12268071_12268661,Pak3 chr3R - chr3R_12268071_12268145;chr3R_12268071_12268124;chr3R_12268071_12268141;chr3R_12268071_12268135 chr3R_12268071_12268661 chr3R_12267971_12268070;chr3R_12268662_12268688 0.00 1.67 0.00 3.95 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 1.28 1.72 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1115,F_chr3R_1052705_1053045 chr3R + chr3R_1052701_1053045 chr3R_1052700_1052701;chr3R_1053045_1053046 chr3R_1052605_1052700;chr3R_1053046_1053145 23.08 17.07 40.00 44.44 19.05 50.00 19.57 21.95 29.31 23.53 31.58 25.58 33.33 31.82 29.17 35.00 46.15 16.00 25.00 30.23 22.22 15.38 26.67 21.74 20.00 26.32 31.25 28.12 30.00 16.67 29.41 20.00 20.00 33.33 27.27 25.00 13.64 21.88 24.39 12.20 20.00 22.92 16.67 20.00 20.69 17.39 24.44 30.77 24.00 20.83 20.00 25.00 21.05 19.15 23.08 16.28 22.97 21.43 K jcn_only_AA rdx,I_chr3R_9796825_9822742 chr3R - chr3R_9795262_9795329 chr3R_9795280_9795329 chr3R_9795330_9795508;chr3R_9795119_9795261 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 1.92 2.33 0.93 0.00 3.70 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention I_chr3R_16141663_16144698,CG5077,I_chr3R_16147605_16147670 chr3R + chr3R_16146174_16147059 chr3R_16146173_16146174;chr3R_16147059_16147060 chr3R_16145951_16146173;chr3R_16147060_16147135 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 86.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9770053_9781634 chr2R_9770053_9771599 chr2R_9769906_9770052;chr2R_9781635_9782097 92.16 92.13 96.15 92.51 93.62 93.40 98.13 90.22 94.01 81.82 91.36 96.72 91.95 97.81 92.62 95.08 97.27 97.12 92.25 89.01 90.91 86.67 91.79 93.33 93.15 96.64 93.86 96.75 85.71 94.68 89.31 90.91 84.80 95.63 93.94 90.43 92.25 95.35 90.00 90.08 76.47 91.88 93.40 90.91 80.00 83.33 83.33 91.38 96.32 85.71 92.42 92.16 100.00 83.33 91.36 92.86 87.50 83.33 K intron_retention Imp,RI_chrX_10699665_10700695 chrX - chrX_10691471_10691540 chrX_10691470_10691471;chrX_10691540_10691541 chrX_10690594_10691470;chrX_10691541_10691696 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21308996_21309579;chr2L_21309092_21309579;chr2L_21309019_21309579 chr2L_21309084_21309579 chr2L_21309580_21309679;chr2L_21308992_21308995 13.39 NA NA 0.00 NA NA 28.57 12.50 12.50 NA NA NA NA NA NA 15.38 16.67 NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA 14.29 NA NA NA 0.00 NA 9.09 0.00 NA NA NA NA NA NA NA NA NA K intron_retention CG10359,CG10357 chr3L + chr3L_3612493_3613074 chr3L_3612492_3612493;chr3L_3613074_3613075 chr3L_3612204_3612492;chr3L_3613075_3613205 0.00 0.00 0.00 3.39 0.00 2.86 4.55 0.00 0.00 0.00 0.00 0.00 0.00 2.63 2.38 0.00 0.00 0.00 0.00 0.00 2.78 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 1.54 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 K intron_retention Atu chr3R + chr3R_1439215_1439281 chr3R_1439214_1439215;chr3R_1439281_1439282 chr3R_1439150_1439214;chr3R_1439282_1439345 0.00 0.00 0.00 10.34 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.88 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.64 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 K cassette Tm1 chr3R + chr3R_11112287_11113974 chr3R_11112287_11113045;chr3R_11113544_11113974 chr3R_11113046_11113543 chr3R_11112274_11112286;chr3R_11113975_11115161 100.00 100.00 100.00 97.92 100.00 100.00 98.73 98.39 99.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 97.80 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.92 100.00 98.28 98.68 100.00 100.00 100.00 97.96 100.00 97.44 100.00 98.88 97.37 100.00 96.97 100.00 100.00 100.00 100.00 100.00 98.41 100.00 100.00 100.00 100.00 100.00 98.53 98.73 K intron_retention CG1109,CG1347 chr3R + chr3R_1486548_1486633 chr3R_1486547_1486548;chr3R_1486633_1486634 chr3R_1486391_1486547;chr3R_1486634_1486970 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 2.94 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 6.67 0.00 0.00 0.00 0.00 11.76 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 5.26 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 11.76 0.00 0.00 0.00 K cassette F_chr3RHet_1879085_1900358,Alg-2 chr3RHet - chr3RHet_1895350_1898553 chr3RHet_1895350_1896506;chr3RHet_1896621_1898553 chr3RHet_1896507_1896620 chr3RHet_1894737_1895349;chr3RHet_1898554_1898894 0.00 0.93 1.52 0.37 0.00 0.00 0.38 0.32 0.58 0.00 0.00 0.36 0.81 0.00 0.00 0.41 0.00 0.00 0.57 0.25 0.00 3.08 1.09 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.61 1.37 1.12 0.00 0.00 0.00 1.45 0.00 0.33 0.67 0.00 0.85 0.00 0.00 0.00 0.30 0.00 0.85 0.00 0.00 0.97 0.00 0.78 0.61 0.56 K intron_retention CG6424 chr2R - chr2R_13605255_13606678 chr2R_13605254_13605255;chr2R_13606678_13606679 chr2R_13604806_13605254;chr2R_13606679_13606819 14.29 NA NA NA NA NA 14.29 NA 25.00 NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CE_chrX_20766225_20927825,CG1529,RI_chrX_20902550_20902613 chrX - chrX_20902550_20902613 chrX_20902550_20902601 chrX_20902450_20902549;chrX_20902614_20902713 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25318474_25319136;chr3R_25318474_25319163;chr3R_25318474_25318925;chr3R_25318474_25319093;chr3R_25318474_25318971;chr3R_25318474_25319004;chr3R_25318474_25319167 chr3R_25318474_25319142 chr3R_25318374_25318473;chr3R_25319168_25319224 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CycA,RE_chr3L_11825347_11826111 chr3L - chr3L_11825347_11826586 chr3L_11825347_11825973 chr3L_11825247_11825346;chr3L_11826587_11826636 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.62 100.00 100.00 100.00 100.00 100.00 100.00 99.40 100.00 100.00 99.32 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.37 100.00 100.00 98.82 100.00 99.36 98.89 100.00 99.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention thoc5 chr2R + chr2R_19841762_19841821 chr2R_19841761_19841762;chr2R_19841821_19841822 chr2R_19841616_19841761;chr2R_19841822_19842616 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 1.43 0.00 0.00 0.00 2.00 0.00 0.00 0.00 1.32 0.00 5.13 0.00 0.00 0.00 3.45 6.06 6.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 5.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette nrv2,I_chr2L_6791842_6794492,I_chr2L_6793397_6794492,I_chr2L_6793405_6793916,I_chr2L_6793405_6794499,I_chr2L_6793684_6794492 chr2L - chr2L_6791842_6794492 chr2L_6791842_6793227;chr2L_6793374_6794492 chr2L_6793228_6793373 chr2L_6791742_6791841;chr2L_6794493_6794592 95.91 93.33 96.30 97.44 100.00 100.00 96.00 95.12 98.18 93.33 94.12 95.35 95.00 100.00 96.97 97.56 92.31 100.00 93.55 97.56 100.00 100.00 92.31 91.89 92.86 100.00 96.30 NA 72.73 84.62 96.15 83.33 87.10 100.00 100.00 100.00 97.06 90.00 91.89 95.65 93.33 96.23 96.15 95.45 95.45 96.30 95.24 95.83 98.46 89.47 100.00 100.00 93.75 85.00 100.00 100.00 90.32 88.46 K intron_retention betaggt-I,I_chr2L_4946222_4946668 chr2L + chr2L_4946222_4946906 chr2L_4946221_4946222;chr2L_4946906_4946907 chr2L_4946122_4946221;chr2L_4946907_4947734 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 1.23 0.00 10.00 3.28 NA NA 0.00 5.88 0.00 0.00 0.00 0.00 0.00 9.80 3.49 0.00 0.00 0.00 0.00 3.12 4.44 0.00 0.00 0.00 0.00 0.00 0.00 5.13 0.00 0.00 1.08 3.08 0.00 2.70 0.00 0.00 3.39 4.44 1.92 0.00 0.00 0.00 1.54 0.00 0.00 3.85 0.00 0.00 0.00 0.00 N alternative_donor CG42533,F_chr2L_7474506_7474872,F_chr2L_7476906_7476978 chr2L - chr2L_7474506_7476978 chr2L_7474506_7474622 chr2L_7474406_7474505;chr2L_7476979_7477078 5.56 3.57 3.45 1.82 4.17 4.55 10.64 2.60 5.17 9.09 5.56 5.26 12.00 4.65 6.90 3.85 2.50 6.45 4.26 22.83 5.56 8.00 5.56 8.33 7.69 3.23 9.52 14.29 10.53 5.56 4.17 6.67 10.34 3.75 6.67 4.76 18.18 7.14 9.52 9.09 4.76 3.03 3.23 3.85 12.50 5.00 7.14 7.41 4.00 5.26 8.33 7.14 7.14 0.00 4.76 7.14 5.26 3.85 K jcn_only_AD g,I_chrX_13628772_13629563 chrX - chrX_13622851_13622915 chrX_13622851_13622912 chrX_13622718_13622850;chrX_13622916_13623056 97.83 89.58 98.55 97.37 98.18 98.63 97.64 97.56 97.85 100.00 98.61 97.30 100.00 98.46 93.07 97.87 98.25 97.10 97.30 95.87 100.00 96.94 97.83 100.00 96.08 95.16 96.04 95.83 97.26 96.59 96.15 97.59 100.00 96.52 97.59 97.12 93.52 100.00 98.26 98.26 97.50 96.27 97.01 97.47 100.00 98.25 98.10 98.33 98.53 98.98 98.85 94.44 98.46 98.70 100.00 98.48 95.00 100.00 K intron_retention quemao,I_chr3L_7341776_7344368 chr3L + chr3L_7342118_7344368 chr3L_7342117_7342118;chr3L_7344368_7344369 chr3L_7341963_7342117;chr3L_7344369_7344468 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.83 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 1.04 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG5028 chr3R + chr3R_21508154_21509194 chr3R_21509106_21509194 chr3R_21509195_21509414 100.00 100.00 100.00 98.99 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 98.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention SdhA,I_chr2R_15283283_15283411,I_chr2R_15283319_15283369 chr2R - chr2R_15283319_15283369 chr2R_15283318_15283319;chr2R_15283369_15283370 chr2R_15283219_15283318;chr2R_15283370_15283469 90.91 91.67 NA 88.89 90.91 NA 96.00 100.00 88.89 NA 87.50 82.35 NA 91.67 NA 87.50 NA NA 90.00 92.31 NA NA 87.50 NA 88.89 94.12 90.00 100.00 100.00 NA 87.50 NA NA 89.47 NA 100.00 78.57 NA 100.00 80.00 NA 94.44 92.31 NA NA 88.89 NA NA 93.75 NA 100.00 90.00 NA NA 94.44 NA NA NA K mutually_exclusive sws chrX - chrX_7852516_7854028,chrX_7854146_7855209 chrX_7852516_7853010,chrX_7853128_7855209 chrX_7854029_7854145 chrX_7853011_7853127 chrX_7852304_7852515;chrX_7855210_7855396 12.50 8.33 9.09 13.79 9.52 9.09 0.00 11.11 7.69 37.50 5.88 9.68 14.29 5.88 13.64 16.00 13.33 5.26 7.14 5.45 5.88 15.09 15.22 11.54 17.24 10.53 10.26 6.45 28.57 16.67 4.76 17.39 21.74 12.90 8.70 13.04 10.87 11.43 11.48 11.63 14.29 11.90 12.50 12.50 13.33 10.34 12.50 15.38 11.76 16.67 9.76 20.00 29.03 14.29 13.04 21.43 21.95 22.22 K jcn_only_AD MAPk-Ak2,RI_chrX_5655618_5656137,I_chrX_5656715_5657427,I_chrX_5656715_5657893,I_chrX_5656715_5657974 chrX - chrX_5656715_5658126;chrX_5656715_5658101 chrX_5656715_5658141 chrX_5656615_5656714;chrX_5658142_5658214 0.72 0.88 0.72 0.00 0.82 1.10 2.67 0.46 0.71 1.00 1.98 1.30 0.00 2.04 0.83 1.10 0.00 0.85 0.81 0.39 0.00 1.96 1.08 1.23 0.00 0.00 3.01 3.30 0.00 0.00 0.60 2.04 0.00 0.58 2.17 0.79 0.60 1.55 0.62 1.68 0.00 0.00 0.00 0.62 0.00 2.27 0.69 0.00 1.32 0.00 0.00 0.00 0.00 0.88 0.00 1.44 1.61 1.35 K intron_retention pasha chr3R + chr3R_27445167_27445231 chr3R_27445166_27445167;chr3R_27445231_27445232 chr3R_27444963_27445166;chr3R_27445232_27446177 0.00 NA NA 0.00 NA NA NA 0.00 10.53 NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 4.55 NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention OstStt3 chr3R - chr3R_20892801_20892854 chr3R_20892800_20892801;chr3R_20892854_20892855 chr3R_20892422_20892800;chr3R_20892855_20893053 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Cip4,E_chr3L_4351187_4363026,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4338183_4363026 chr3L_4338182_4338183;chr3L_4363026_4363027 chr3L_4338067_4338182;chr3L_4363027_4363126 0.00 0.00 0.00 1.29 0.00 2.06 0.39 0.99 1.29 0.00 5.80 0.00 2.11 0.00 1.31 1.06 1.65 0.00 0.00 1.61 5.19 0.00 0.84 0.00 0.00 0.00 1.27 0.00 2.70 1.42 0.78 0.00 0.00 1.46 0.00 0.00 0.00 0.00 1.59 1.49 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.74 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD faf,RI_chr3R_27603474_27603893,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27602901_27603893 chr3R_27602905_27603893 chr3R_27603894_27603993;chr3R_27602832_27602900 96.84 97.14 97.87 88.68 96.43 96.36 92.06 95.38 99.01 94.87 100.00 94.12 97.44 93.18 93.10 97.33 100.00 100.00 95.83 95.65 97.67 93.44 97.87 98.51 96.00 98.15 98.59 96.00 100.00 95.12 90.74 NA 93.18 97.56 94.12 96.23 98.44 97.18 95.45 97.62 NA 96.51 94.29 100.00 NA 96.55 96.00 100.00 97.73 100.00 97.75 95.31 96.15 NA 98.46 100.00 100.00 NA K intron_retention l(2)k01209,I_chr2R_13308079_13310771,I_chr2R_13309452_13310771,RI_chr2R_13310877_13311160 chr2R + chr2R_13308079_13311160 chr2R_13308078_13308079;chr2R_13311160_13311161 chr2R_13307979_13308078;chr2R_13311161_13311260 14.29 9.52 11.76 14.63 16.67 8.11 14.29 16.36 13.24 16.00 10.71 12.86 15.00 22.22 8.82 17.54 9.09 15.15 21.88 19.54 9.68 20.37 12.50 11.76 11.11 25.93 12.90 8.70 29.79 17.86 16.67 14.29 16.09 18.87 16.67 25.86 10.71 12.28 12.90 13.64 11.48 16.95 14.29 13.73 11.90 17.31 15.56 29.55 15.25 9.76 8.16 16.13 11.76 6.25 18.92 8.70 14.58 19.61 K alternative_donor CG3114,RI_chrX_168562_168685 chrX - chrX_167426_167502 chrX_167426_167493 chrX_167216_167425;chrX_167503_168561 5.56 NA 6.67 15.00 NA 5.56 NA 4.55 6.67 NA NA 0.00 NA NA NA 15.79 NA 17.65 0.00 5.26 NA 0.00 4.35 NA NA NA 11.76 NA 5.56 0.00 0.00 12.50 10.00 4.55 0.00 5.00 4.76 NA 10.00 7.69 NA 0.00 NA NA 13.33 5.56 NA 3.85 0.00 NA 7.14 NA NA NA 5.88 NA NA 6.67 N jcn_only_AD eIF5B chr3L - chr3L_3447725_3457214 chr3L_3447725_3447949 chr3L_3447648_3447724;chr3L_3457215_3457347 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention rdgBbeta,I_chr2R_13584056_13584177,CRE_chr2R_13584378_13585329 chr2R - chr2R_13584056_13584116 chr2R_13584055_13584056;chr2R_13584116_13584117 chr2R_13583956_13584055;chr2R_13584117_13584157 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 3.70 NA NA NA NA NA 0.00 NA NA 0.00 K alternative_acceptor CG30007 chr2R + chr2R_5782197_5782254 chr2R_5782197_5782251 chr2R_5781860_5782196;chr2R_5782255_5782701 39.29 NA NA 33.33 NA NA 36.00 50.00 44.44 NA NA 33.33 NA NA 36.36 47.06 41.67 NA 50.00 39.29 NA NA 46.15 50.00 NA 33.33 26.67 36.36 NA NA 43.75 NA NA 50.00 NA NA 36.36 NA NA 20.00 NA 40.91 NA 36.36 NA NA NA NA 40.00 NA NA NA NA NA 37.50 NA NA NA K alternative_donor CG15739 chrX + chrX_11767537_11767914 chrX_11767578_11767914 chrX_11767915_11768298;chrX_11767352_11767536 2.08 3.12 0.00 3.23 0.00 3.57 0.00 0.00 3.08 0.00 4.76 0.00 0.00 0.00 5.13 6.25 4.17 15.00 5.41 3.51 0.00 9.52 0.00 2.22 0.00 3.70 10.00 0.00 NA 0.00 5.00 5.88 0.00 4.08 0.00 0.00 0.00 3.85 0.00 3.23 NA 1.54 0.00 0.00 NA 3.45 5.88 0.00 3.64 3.70 2.00 0.00 0.00 3.85 0.00 4.17 2.17 0.00 K jcn_only_AA CG11665,I_chr2R_1530001_1531096,RI_chr2R_1530001_1531145,I_chr2R_1531244_1531321,RI_chr2R_1535330_1540011 chr2R - chr2R_1531224_1531321 chr2R_1531244_1531321 chr2R_1531322_1531421;chr2R_1531146_1531223 1.75 3.28 3.92 0.85 0.00 2.04 1.09 2.46 1.75 0.00 0.00 0.00 0.00 0.00 2.53 1.05 1.75 2.94 0.00 1.05 0.00 4.35 0.00 4.84 0.00 0.00 5.19 4.55 5.00 5.13 2.70 NA 0.00 1.83 7.32 6.25 0.00 3.92 3.92 1.69 4.00 1.15 3.51 0.00 NA 7.14 1.79 NA 2.94 6.06 1.18 0.00 0.00 0.00 1.16 1.67 4.35 NA K intron_retention CG5270,I_chr3R_7253146_7253201,F_chr3R_7256294_7256363 chr3R + chr3R_7253142_7253201 chr3R_7253141_7253142;chr3R_7253201_7253202 chr3R_7253046_7253141;chr3R_7253202_7253301 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 2.13 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 6.12 NA 0.00 NA NA NA NA 0.00 NA 3.45 NA NA NA 0.00 0.00 0.00 NA N intron_retention CG17760 chr2R + chr2R_8513731_8514257 chr2R_8513730_8513731;chr2R_8514257_8514258 chr2R_8513705_8513730;chr2R_8514258_8514421 100.00 100.00 100.00 100.00 NA 100.00 76.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA NA 100.00 100.00 NA 82.86 NA 100.00 NA NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 K jcn_only_AD CG6178 chr3R + chr3R_19978381_19978811;chr3R_19978326_19978811 chr3R_19978271_19978811 chr3R_19978812_19979489;chr3R_19978101_19978270 4.00 8.33 2.17 4.00 3.45 4.88 12.50 5.71 8.33 0.00 2.94 7.69 0.00 2.04 3.92 2.13 4.55 0.00 13.04 1.12 0.00 0.00 6.82 0.00 4.55 7.50 0.00 0.00 3.57 NA 5.77 3.03 7.69 6.25 7.69 0.00 0.00 8.00 4.35 11.76 0.00 4.17 8.11 NA 17.24 2.94 4.08 8.70 1.37 4.76 0.00 0.00 0.00 8.70 6.82 3.85 6.12 3.64 K intron_retention RpS5a,I_chrX_17038786_17039048,I_chrX_17041234_17041901,I_chrX_17041234_17041720,RI_chrX_17041234_17041750,RI_chrX_17041234_17041760,I_chrX_17041234_17041832,I_chrX_17041234_17041844,I_chrX_17041976_17042236 chrX - chrX_17041234_17042089 chrX_17041233_17041234;chrX_17042089_17042090 chrX_17041175_17041233;chrX_17042090_17042158 27.70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 19.05 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA K multi_cassette PP2A-B',RI_chr3R_13993929_13994503 chr3R + chr3R_13993590_13997250 chr3R_13993590_13995205;chr3R_13995271_13995378;chr3R_13995821_13997250 chr3R_13995206_13995270;chr3R_13995379_13995820 chr3R_13993510_13993589;chr3R_13997251_13997425 75.00 66.67 75.00 75.00 NA NA NA 22.22 75.00 NA NA 60.00 NA NA NA NA NA NA NA 80.00 NA 50.00 50.00 60.00 66.67 NA NA NA 50.00 100.00 NA 75.00 100.00 75.00 100.00 80.00 75.00 75.00 75.00 60.00 100.00 60.00 NA 100.00 66.67 100.00 100.00 75.00 100.00 NA 80.00 NA 100.00 66.67 NA 66.67 66.67 75.00 K alternative_acceptor CG31999,I_chr4_236187_238030,I_chr4_236686_238031,I_chr4_238453_238873,I_chr4_238809_238873,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_238453_238873;chr4_238809_238873 chr4_238121_238873 chr4_238874_238973;chr4_238032_238120 98.34 100.00 96.08 96.15 97.62 100.00 98.94 97.03 97.84 100.00 90.48 98.51 97.22 97.14 98.28 98.02 96.61 100.00 97.73 97.60 92.31 100.00 97.14 100.00 100.00 93.75 96.30 NA 100.00 97.14 100.00 97.50 97.30 98.39 100.00 100.00 100.00 100.00 100.00 96.23 100.00 98.48 98.21 100.00 100.00 97.14 100.00 98.00 98.73 97.50 97.83 100.00 97.06 100.00 100.00 100.00 96.97 98.63 K intron_retention Msp-300,I_chr2L_5197634_5197866,snoRNA:Psi18S-525k,noncoding_1106 chr2L + chr2L_5202303_5202764 chr2L_5202302_5202303;chr2L_5202764_5202765 chr2L_5199343_5202302;chr2L_5202765_5202803 0.00 0.00 0.00 3.77 0.00 2.78 0.00 9.84 2.94 0.00 9.52 2.44 0.00 0.00 0.00 4.76 0.00 0.00 6.45 2.35 0.00 0.00 1.43 2.35 0.00 4.76 5.13 10.14 0.00 5.56 0.00 0.00 3.85 5.06 0.00 0.00 0.98 1.23 0.00 0.00 NA 4.44 5.13 0.00 0.00 0.00 0.00 12.50 3.08 0.00 2.33 4.76 2.56 0.00 3.45 0.00 0.00 NA K alternative_acceptor CG17508,RI_chr2R_1496995_1497120 chr2R + chr2R_1496995_1497568;chr2R_1496995_1497637 chr2R_1496995_1497120 chr2R_1496895_1496994;chr2R_1497638_1497761 8.11 6.98 6.45 19.74 4.76 8.11 21.62 12.26 9.48 7.69 4.88 11.69 17.50 11.11 5.77 9.68 5.45 4.17 11.94 7.69 4.55 5.00 6.67 5.88 17.39 7.32 10.64 11.11 16.67 6.06 7.02 7.14 6.25 10.23 12.90 12.50 3.23 6.90 5.71 7.14 13.64 8.70 4.17 4.76 4.35 10.64 11.54 4.76 10.38 8.70 9.26 7.89 12.50 11.43 7.81 9.30 8.82 9.62 K intron_retention AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9004021_9004854 chrX_9004020_9004021;chrX_9004854_9004855 chrX_9003588_9004020;chrX_9004855_9004862 92.86 NA NA NA NA NA NA 88.89 100.00 NA NA NA NA NA NA 92.31 NA NA NA 90.00 NA 100.00 NA NA 88.89 100.00 NA NA NA 100.00 NA NA 94.12 91.67 NA NA NA NA NA 92.86 88.89 NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA 87.50 NA NA NA N jcn_only_AA vir-1,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,I_chr2L_12421830_12423260 chr2L - chr2L_12421862_12423322;chr2L_12421830_12423322 chr2L_12421902_12423322 chr2L_12423323_12423328;chr2L_12421816_12421829 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 3.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_donor sxc,I_chr2R_1203985_1205289,I_chr2R_1208121_1213310,I_chr2R_1213177_1213308 chr2R + chr2R_1194785_1194977;chr2R_1194919_1194977 chr2R_1194858_1194977 chr2R_1194978_1195157;chr2R_1194775_1194784 0.00 NA NA 0.00 NA NA NA 11.11 12.50 NA NA 0.00 NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD RpS30 chr3R + chr3R_16676350_16676576 chr3R_16676418_16676576 chr3R_16676577_16676665;chr3R_16676349_16676349 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 1.32 0.05 0.00 0.00 0.00 0.00 0.05 0.06 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 N jcn_only_AA CG1416,I_chr2L_21758100_21758179,I_chr2L_21758143_21758183,I_chr2L_21758143_21758209 chr2L + chr2L_21758143_21758209;chr2L_21758143_21758205;chr2L_21758143_21758183 chr2L_21758143_21758201 chr2L_21758116_21758142;chr2L_21758210_21758279 96.09 96.43 97.44 93.88 98.15 98.39 95.16 83.70 84.03 68.75 95.00 91.47 95.65 80.60 72.88 81.31 96.67 84.95 98.00 88.89 97.87 97.65 93.75 88.42 100.00 96.77 97.50 96.30 96.43 97.62 82.89 96.10 100.00 84.62 96.08 NA 98.59 97.01 82.02 84.27 100.00 82.69 100.00 100.00 96.12 95.59 84.52 97.01 83.69 96.81 100.00 80.95 100.00 96.55 89.00 96.84 85.45 86.87 K jcn_only_AA rho-7,noncoding_6143 chr2R - chr2R_7876063_7876127 chr2R_7876069_7876127 chr2R_7876128_7876254;chr2R_7876008_7876062 100.00 95.65 97.73 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.34 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 98.04 100.00 100.00 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.36 K jcn_only_AA Mmp1,E_chr2R_20560380_20562585,I_chr2R_20564123_20565214,I_chr2R_20569965_20572193 chr2R - chr2R_20559830_20562495 chr2R_20560840_20562495 chr2R_20562496_20562664;chr2R_20559732_20559829 0.32 0.00 0.00 0.63 0.00 0.00 0.32 0.00 0.79 1.57 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 3.12 0.24 0.00 0.00 0.58 0.00 0.47 0.39 0.91 0.32 0.62 1.46 0.29 0.75 0.00 0.57 0.00 0.18 0.30 2.13 0.45 0.00 0.48 0.54 0.58 0.37 2.29 1.11 0.26 0.51 0.94 0.59 0.00 0.39 0.00 0.37 0.63 K jcn_only_AD CG5514,RI_chr3R_23768206_23768306,Gp93 chr3R + chr3R_23767856_23768309;chr3R_23767860_23768309 chr3R_23768206_23768309 chr3R_23768310_23768406 1.47 0.00 1.96 0.00 3.45 2.33 2.13 0.00 1.01 4.00 0.00 1.39 0.00 0.00 2.44 0.00 0.00 2.17 2.04 3.92 6.45 NA 1.72 0.00 0.00 0.00 1.82 4.00 2.08 0.00 0.00 1.92 1.47 1.61 4.44 0.00 0.00 3.03 2.83 1.12 1.47 1.15 0.00 9.76 4.49 1.23 2.06 0.00 2.90 0.00 1.37 NA 2.60 0.00 1.92 1.82 0.00 0.00 K intron_retention sec23,I_chr3R_1474873_1475080,I_chr3R_1477727_1478102 chr3R + chr3R_1476908_1476975 chr3R_1476907_1476908;chr3R_1476975_1476976 chr3R_1476754_1476907;chr3R_1476976_1477524 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Hrb98DE,I_chr3R_24425722_24428493,I_chr3R_24426291_24426781,RI_chr3R_24429041_24431183 chr3R + chr3R_24426291_24426439 chr3R_24426290_24426291;chr3R_24426439_24426440 chr3R_24426191_24426290;chr3R_24426440_24426915 6.17 7.14 3.60 4.81 5.13 5.33 5.04 10.20 6.85 20.00 0.00 7.23 3.17 6.17 4.94 4.58 2.22 3.45 7.14 3.17 NA 5.52 10.94 11.43 18.31 7.55 6.31 3.30 8.43 7.04 6.06 4.60 9.68 5.65 10.42 12.37 6.67 5.56 4.84 5.84 8.47 6.16 5.17 6.32 5.41 9.26 6.73 5.10 5.03 7.06 10.40 10.00 5.33 12.84 6.38 5.88 7.37 4.21 K jcn_only_AA CG8184,I_chrX_15620707_15620769 chrX + chrX_15620707_15620769 chrX_15620707_15620765 chrX_15620607_15620706;chrX_15620770_15620869 99.07 100.00 100.00 98.41 98.61 100.00 100.00 97.06 98.59 100.00 100.00 100.00 100.00 100.00 98.44 100.00 100.00 99.01 98.99 99.49 97.47 99.59 99.32 99.14 98.91 100.00 99.07 96.20 97.46 98.04 99.15 95.52 99.41 99.44 99.02 99.03 99.44 97.80 98.79 98.21 98.61 100.00 98.94 100.00 99.14 100.00 99.00 100.00 96.30 98.91 98.73 100.00 97.06 100.00 99.29 98.75 98.55 98.02 K cassette CG42248,I_chrX_705402_712468 chrX - chrX_705402_712438;chrX_705402_712468 chrX_705402_705626;chrX_705723_712438,chrX_705723_712468 chrX_705627_705722 chrX_705302_705401;chrX_712469_712568 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907784_9908424;chr2L_9907784_9908531;chr2L_9907784_9908405 chr2L_9907784_9908307 chr2L_9907756_9907783;chr2L_9908532_9908619 8.00 9.43 13.64 8.33 11.54 9.38 12.86 13.16 12.80 9.09 8.00 7.53 10.26 6.82 13.64 16.05 15.91 8.00 12.50 4.29 10.00 5.51 7.07 7.69 5.56 4.55 8.33 11.11 4.17 10.71 6.67 8.82 5.80 13.04 10.61 1.94 7.04 4.65 6.56 7.22 9.09 10.99 14.63 5.13 5.26 2.63 2.99 4.76 9.64 9.09 6.17 7.69 3.85 6.52 9.68 4.00 3.45 4.55 K intron_retention iPLA2-VIA chr3L - chr3L_9856717_9857292 chr3L_9856716_9856717;chr3L_9857292_9857293 chr3L_9856421_9856716;chr3L_9857293_9857459 2.04 0.00 5.56 2.33 0.00 0.00 6.32 3.61 5.88 13.33 8.33 5.88 2.86 0.00 2.04 6.35 2.44 3.92 4.17 4.08 0.00 10.53 2.44 0.00 4.55 4.44 9.52 7.14 3.85 0.00 0.00 4.76 3.39 0.00 0.00 0.00 1.89 0.00 3.92 1.22 0.00 4.94 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 1.54 0.00 0.00 0.00 3.70 0.00 0.00 3.57 K alternative_donor BicD,Aac11,I_chr2L_17475843_17475910 chr2L - chr2L_17475355_17475534 chr2L_17475355_17475407 chr2L_17474918_17475354;chr2L_17475535_17475615 91.67 96.77 88.46 89.23 81.25 96.43 93.48 88.24 91.67 94.74 93.33 88.71 97.06 93.55 93.10 89.06 85.71 86.96 93.62 84.48 95.24 95.83 94.44 88.89 94.44 91.67 97.06 89.66 69.05 93.75 91.89 88.24 91.11 86.44 91.30 88.10 80.95 95.00 96.00 90.91 84.75 93.44 82.05 93.75 66.67 81.11 97.87 74.07 90.91 93.02 95.65 90.48 94.87 93.02 89.19 97.62 97.06 81.52 K jcn_only_AD yu chrX - chrX_5309489_5309560 chrX_5309489_5309554 chrX_5309355_5309488;chrX_5309561_5309951 0.00 0.52 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.56 0.28 0.00 0.00 0.36 0.00 0.00 0.66 0.81 1.54 0.00 0.00 0.41 0.00 0.58 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.68 0.00 0.65 0.00 0.92 0.36 0.00 0.87 0.00 1.46 0.00 0.00 0.00 K intron_retention stck,I_chr3R_4184313_4184380,I_chr3R_4184660_4184730 chr3R + chr3R_4184127_4184192 chr3R_4184126_4184127;chr3R_4184192_4184193 chr3R_4184063_4184126;chr3R_4184193_4184312 3.85 3.64 6.82 2.41 0.00 0.00 4.41 2.63 3.17 0.00 4.65 6.02 0.00 5.71 8.51 8.47 4.35 0.00 2.13 5.38 4.26 1.23 5.08 4.17 11.76 3.92 6.90 12.12 10.81 5.41 0.00 6.25 6.90 3.66 0.00 4.76 3.57 0.00 0.00 7.04 0.00 1.83 4.35 0.00 3.33 5.88 1.79 7.41 2.70 8.93 6.12 0.00 1.82 3.85 1.59 0.00 2.63 5.71 K intron_retention eIF-4E,RI_chr3L_9394054_9394756,I_chr3L_9394308_9394756,RI_chr3L_9394468_9394631,I_chr3L_9394468_9394659,I_chr3L_9394468_9395155,I_chr3L_9394468_9395240,I_chr3L_9394468_9395446,I_chr3L_9394685_9394756,RI_chr3L_9394707_9395016,RI_chr3L_9394707_9395198,I_chr3L_9394707_9395309,I_chr3L_9394819_9394884,I_chr3L_9394819_9395016,I_chr3L_9394819_9395198,I_chr3L_9394819_9395379 chr3L - chr3L_9394707_9395379 chr3L_9394706_9394707;chr3L_9395379_9395380 chr3L_9394660_9394706;chr3L_9395380_9395409 14.06 13.21 24.32 13.73 16.67 23.08 11.22 18.75 22.37 5.56 17.39 10.79 13.79 23.40 14.89 16.51 16.67 20.00 20.00 13.33 16.00 11.76 22.81 12.00 12.20 22.86 21.05 8.33 10.53 15.56 18.87 12.12 17.14 16.04 14.58 9.80 13.33 9.09 15.69 13.70 6.25 16.19 12.20 16.67 9.09 17.39 10.71 7.27 12.28 14.75 14.71 18.75 6.12 4.88 14.06 10.87 12.68 9.52 N alternative_donor CG17233,RI_chr3L_20232898_20232962 chr3L - chr3L_20233633_20234944;chr3L_20233633_20234218;chr3L_20233633_20234418 chr3L_20233633_20234374 chr3L_20232963_20233632;chr3L_20234945_20234989 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 6.67 0.00 0.00 0.00 16.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 K intron_retention Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045275_16046104 chr3L_16045274_16045275;chr3L_16046104_16046105 chr3L_16045255_16045274;chr3L_16046105_16046204 37.89 40.00 33.33 37.50 26.67 28.57 41.46 37.84 34.55 NA 31.82 30.00 37.93 33.33 47.37 42.11 34.78 36.36 40.62 36.84 20.00 67.57 41.38 36.84 28.57 40.62 47.62 56.25 32.00 42.11 45.83 NA 51.72 40.00 35.71 61.29 33.33 58.33 35.71 37.04 30.77 39.13 39.13 47.83 NA 33.33 50.00 39.39 37.74 NA 45.00 40.00 60.00 NA 35.14 NA NA 33.33 K intron_retention spin,I_chr2R_12013288_12013847 chr2R + chr2R_12020141_12023531 chr2R_12020140_12020141;chr2R_12023531_12023532 chr2R_12020064_12020140;chr2R_12023532_12023630 63.64 NA NA 88.00 NA NA NA 90.91 92.86 NA NA 75.00 NA NA 87.50 100.00 NA NA NA 90.91 NA 40.00 69.23 46.67 46.15 NA 57.14 55.00 35.71 38.89 NA 70.00 57.14 NA NA 63.64 76.47 41.67 53.85 47.06 90.00 84.62 NA 76.92 NA 50.00 NA 63.16 72.73 43.75 40.00 NA NA NA 80.00 NA NA NA K intron_retention ade5,I_chrX_12653069_12653157 chrX - chrX_12653069_12653495 chrX_12653068_12653069;chrX_12653495_12653496 chrX_12652969_12653068;chrX_12653496_12653640 0.77 1.01 0.00 1.04 0.42 0.47 1.38 1.19 1.05 0.39 0.00 1.07 0.00 0.00 0.00 0.91 0.90 0.00 0.00 0.90 0.77 1.57 0.95 0.96 0.42 1.20 2.14 2.23 1.57 0.27 0.00 0.42 0.72 0.63 0.69 1.52 0.59 1.12 0.51 1.33 1.15 0.85 0.93 0.63 0.60 0.87 0.25 0.00 0.80 0.60 1.04 1.06 0.00 0.00 0.77 0.98 0.52 0.29 K intron_retention CG7837 chr3R - chr3R_25623499_25623563 chr3R_25623498_25623499;chr3R_25623563_25623564 chr3R_25623292_25623498;chr3R_25623564_25623902 0.00 0.00 0.00 4.44 0.00 NA 0.00 0.00 0.00 NA 0.00 2.56 10.00 4.55 0.00 3.33 0.00 0.00 0.00 0.00 0.00 18.52 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.88 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AD CG17665 chr2R - chr2R_126662_129940 chr2R_126662_129593 chr2R_126199_126661;chr2R_129941_130204 96.00 NA 100.00 98.04 96.00 90.00 95.56 98.28 95.00 NA NA 95.24 92.86 100.00 94.12 97.06 97.50 NA 97.87 93.75 100.00 NA NA NA NA 100.00 NA NA NA NA 79.25 NA NA 96.61 NA NA NA NA NA NA NA 92.59 100.00 NA NA NA NA NA 95.06 NA NA NA NA NA 94.74 NA NA NA K intron_retention Tif-IA,RI_chr2L_22250854_22257652 chr2L + chr2L_22253333_22253421 chr2L_22253332_22253333;chr2L_22253421_22253422 chr2L_22253256_22253332;chr2L_22253422_22253685 91.57 92.59 91.49 93.18 94.92 89.19 84.04 94.06 90.23 88.24 90.32 90.37 95.05 93.33 92.04 94.74 93.58 90.14 94.12 89.38 88.71 89.09 95.39 95.76 94.37 93.10 93.51 95.18 91.43 94.03 82.47 87.27 95.24 90.28 86.60 90.22 94.20 92.22 88.24 91.41 90.36 90.37 91.09 92.39 88.37 87.39 94.32 85.94 90.64 90.82 92.40 91.49 94.44 91.57 92.65 91.84 94.21 93.55 K intron_retention Lasp,RI_chr3L_16674471_16704042 chr3L - chr3L_16687397_16704042 chr3L_16687396_16687397;chr3L_16704042_16704043 chr3L_16687302_16687396;chr3L_16704043_16704142 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.55 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG14939,RI_chr2L_11812683_11813150 chr2L - chr2L_11812683_11813724;chr2L_11812683_11813150 chr2L_11812683_11813633 chr2L_11812583_11812682;chr2L_11813725_11813792 0.00 4.35 2.17 0.00 0.00 3.33 1.96 1.72 0.88 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 2.27 1.12 0.00 6.67 0.00 8.33 10.00 0.00 0.00 9.09 6.25 0.00 0.00 5.00 0.00 1.27 NA 0.00 3.33 6.25 5.56 0.00 0.00 0.00 0.00 8.33 0.00 0.00 9.09 4.55 0.00 9.09 0.00 0.00 NA NA 2.38 NA 0.00 0.00 K intron_retention eIF-5A,I_chr2R_19945430_19946454,I_chr2R_19946177_19946252,I_chr2R_19946177_19946255,I_chr2R_19946177_19946454,E_chr2R_19946177_19946508,I_chr2R_19946186_19946252,I_chr2R_19946186_19946255,I_chr2R_19946186_19946454,I_chr2R_19946186_19946508,I_chr2R_19946299_19946454,I_chr2R_19946657_19946733,I_chr2R_19948517_19948682 chr2R + chr2R_19946215_19946454 chr2R_19946214_19946215;chr2R_19946454_19946455 chr2R_19946199_19946214;chr2R_19946455_19946554 0.09 0.09 0.00 0.09 0.00 0.06 0.10 0.08 0.10 0.00 0.11 0.08 0.21 0.29 0.13 0.08 0.04 0.00 0.11 0.10 0.00 0.08 0.07 0.17 0.00 0.10 0.29 0.27 0.12 0.11 0.09 0.07 0.09 0.00 0.07 0.07 0.15 0.00 0.24 0.14 0.08 0.12 0.10 0.17 0.13 0.22 0.09 0.00 0.11 0.00 0.19 0.00 0.00 0.00 0.11 0.08 0.15 0.16 K jcn_only_AD Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4833364_4834454;chrX_4833234_4834454;chrX_4833203_4834454;chrX_4833308_4834454 chrX_4833338_4834454 chrX_4834455_4834880;chrX_4833197_4833202 13.62 NA 4.55 5.41 23.81 NA 10.42 7.32 11.36 16.67 NA 5.56 15.38 17.65 NA 21.88 15.62 NA 22.50 11.76 NA 0.00 NA NA NA NA NA NA NA 16.13 20.83 NA 11.86 15.91 NA NA NA NA NA NA NA 2.70 27.27 NA NA NA NA 22.58 6.67 NA NA NA NA NA 4.76 NA NA NA K intron_retention CG17698 chr3L + chr3L_23741474_23741523 chr3L_23741473_23741474;chr3L_23741523_23741524 chr3L_23741240_23741473;chr3L_23741524_23741816 0.00 NA 0.00 9.76 NA 0.00 0.00 3.57 5.88 NA NA 0.00 0.00 8.00 0.00 7.14 0.00 0.00 3.23 3.33 NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA 3.64 0.00 NA NA NA NA 4.76 NA 9.76 0.00 NA NA 0.00 0.00 0.00 3.03 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 K intron_retention CG8176,I_chr3R_5348614_5348964 chr3R + chr3R_5349519_5349923 chr3R_5349518_5349519;chr3R_5349923_5349924 chr3R_5349450_5349518;chr3R_5349924_5350029 11.96 13.79 9.09 12.50 NA 11.11 12.50 13.16 14.06 NA 9.68 25.00 14.29 10.71 14.81 7.55 19.05 6.67 16.67 18.75 9.68 12.90 5.71 9.68 23.53 0.00 17.14 NA 12.50 10.53 18.18 0.00 5.00 17.07 0.00 8.00 6.67 5.56 16.67 29.27 NA 13.04 15.00 11.11 0.00 10.53 4.00 20.83 8.70 0.00 11.43 15.62 17.65 NA 15.15 0.00 14.29 8.33 K intron_retention CG42345,I_chr2R_1311745_1327074 chr2R + chr2R_1327260_1328114 chr2R_1327259_1327260;chr2R_1328114_1328115 chr2R_1327075_1327259;chr2R_1328115_1328154 0.00 0.00 0.00 0.98 0.00 0.00 2.38 0.00 0.74 0.00 0.00 1.72 0.00 0.00 0.00 2.56 0.00 0.00 0.00 1.08 0.00 0.00 1.22 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 1.33 K alternative_donor CG31716,I_chr2L_10397163_10398034,RI_chr2L_10397195_10398034,I_chr2L_10397648_10398034 chr2L + chr2L_10396922_10398034;chr2L_10396983_10398034 chr2L_10396850_10398034 chr2L_10398035_10398134;chr2L_10396810_10396849 0.00 5.00 0.00 0.00 0.00 0.00 2.08 1.75 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 4.35 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 14.29 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 7.14 0.00 11.11 0.00 0.00 0.00 4.55 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 0.00 N jcn_only_AA Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629579_2629913;chr3L_2629613_2629913;chr3L_2629684_2629913;chr3L_2629527_2629913;chr3L_2629597_2629913 chr3L_2629585_2629913 chr3L_2629914_2629921;chr3L_2629427_2629526 8.89 10.99 12.38 10.18 9.91 11.64 16.22 6.36 12.21 15.87 18.41 10.44 16.20 11.25 9.29 11.39 13.11 6.20 9.59 11.00 14.63 2.78 7.29 7.34 5.56 8.89 10.20 7.55 7.28 7.38 9.22 12.07 6.64 10.51 10.29 7.55 8.86 3.78 9.62 8.41 7.23 10.37 11.22 8.30 6.70 5.53 7.95 11.37 8.72 6.62 6.33 7.87 5.94 5.96 10.12 7.11 2.96 4.60 K intron_retention CG12004 chr3L + chr3L_1572458_1572523 chr3L_1572457_1572458;chr3L_1572523_1572524 chr3L_1572292_1572457;chr3L_1572524_1572782 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 1.44 0.00 0.00 0.00 0.00 1.03 0.90 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG30381,RI_chr2R_3817895_3817951,RI_chr2R_3819348_3819403 chr2R - chr2R_3818106_3818164 chr2R_3818105_3818106;chr2R_3818164_3818165 chr2R_3817957_3818105;chr2R_3818165_3818297 0.00 0.00 NA 9.09 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 9.09 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 25.00 0.00 NA NA NA 0.00 NA NA 0.00 0.00 0.00 6.25 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AD CG40191,I_chr2RHet_391475_391828,I_chr2RHet_392279_392824 chr2RHet + chr2RHet_391475_391803 chr2RHet_391479_391803 chr2RHet_391804_391926;chr2RHet_391375_391474 0.78 0.46 0.46 0.65 0.57 1.12 0.37 0.33 1.02 1.41 0.00 1.14 1.34 2.20 0.81 2.56 0.00 0.53 0.94 0.63 1.14 0.71 1.28 0.93 1.72 0.93 1.36 3.97 1.99 0.51 0.48 0.00 0.49 1.03 0.00 2.08 1.02 0.57 0.46 0.77 2.00 0.77 0.65 0.00 1.05 1.00 0.57 0.00 1.04 0.59 0.88 0.62 2.33 0.00 0.00 1.12 0.78 1.20 K jcn_only_AD CG42507,Trl,EI_chr3L_14750431_14750893,I_chr3L_14750431_14750985,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14750431_14750941;chr3L_14750431_14750762;chr3L_14750431_14751007;chr3L_14750431_14750583 chr3L_14750431_14750893 chr3L_14750331_14750430;chr3L_14751008_14751008 0.00 0.00 0.00 2.00 0.00 0.00 0.00 3.12 0.00 0.00 6.67 1.52 0.00 3.12 0.00 3.51 3.70 0.00 2.63 0.00 0.00 0.00 0.00 1.47 0.00 2.56 0.00 NA 0.00 0.00 2.70 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 1.18 0.00 3.51 4.29 0.00 1.35 4.55 0.00 2.00 0.00 0.00 0.00 2.56 N jcn_only_AA Moe,I_chrX_8774434_8791759 chrX - chrX_8774434_8785766 chrX_8785657_8785766 chrX_8785767_8785791 100.00 65.22 NA NA NA NA NA 100.00 81.67 NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA NA NA 100.00 NA 100.00 NA K alternative_acceptor I_chr3R_11826508_11826910,GATAe chr3R + chr3R_11844318_11844380 chr3R_11844318_11844378 chr3R_11843987_11844317;chr3R_11844381_11844611 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention CG11299,I_chr2R_19619053_19619186 chr2R + chr2R_19619744_19619915 chr2R_19619743_19619744;chr2R_19619915_19619916 chr2R_19619560_19619743;chr2R_19619916_19620026 0.00 7.27 6.06 6.56 7.69 0.00 0.00 0.00 4.27 0.00 0.00 2.70 0.00 7.89 6.52 0.00 0.00 0.00 2.08 1.77 0.00 0.00 2.60 0.00 0.00 0.00 6.82 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 6.56 3.45 0.00 0.00 0.00 5.41 5.41 0.00 0.00 1.32 0.00 0.00 2.60 3.70 1.75 3.12 0.00 0.00 4.76 0.00 2.50 0.00 K intron_retention CG7029 chr3R + chr3R_18614491_18615214 chr3R_18614490_18614491;chr3R_18615214_18615215 chr3R_18614301_18614490;chr3R_18615215_18617722 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 K jcn_only_AA I_chr2L_114992_156735,RI_chr2L_114992_155545,RI_chr2L_114992_155566,I_chr2L_114992_155637,I_chr2L_114992_156175,RI_chr2L_155430_155637,CG11455,CG3436 chr2L + chr2L_155430_155493;chr2L_155430_155637 chr2L_155430_155566 chr2L_155424_155429;chr2L_155638_155645 97.62 98.25 97.50 84.62 92.68 98.44 95.16 97.66 97.06 100.00 97.56 97.81 100.00 97.14 95.79 97.92 100.00 94.92 97.59 96.09 100.00 NA 94.23 92.59 100.00 97.37 96.97 96.30 96.15 100.00 98.67 97.67 96.67 99.07 100.00 NA 98.59 97.30 100.00 98.33 NA 97.71 94.44 94.29 94.44 98.36 92.31 100.00 96.92 100.00 97.22 100.00 100.00 97.14 98.81 100.00 96.84 98.77 K jcn_only_AA CG11148,F_chr4_876482_880932,I_chr4_880982_881065,I_chr4_882005_882418,RI_chr4_886921_887162 chr4 - chr4_880982_881065 chr4_881008_881065 chr4_881066_881165;chr4_880961_880981 99.41 98.51 100.00 99.41 100.00 100.00 98.69 99.47 98.67 100.00 100.00 98.84 100.00 100.00 98.26 100.00 100.00 97.75 98.40 98.49 100.00 100.00 98.82 100.00 100.00 100.00 97.37 100.00 98.36 100.00 97.66 98.78 98.53 98.47 98.08 97.78 98.67 98.61 98.67 100.00 100.00 99.50 100.00 100.00 100.00 98.95 100.00 100.00 99.52 98.54 100.00 98.70 100.00 98.72 99.16 96.63 99.32 99.32 K jcn_only_AA Glycogenin chr2R + chr2R_17088164_17098747 chr2R_17088164_17092117 chr2R_17088158_17088163 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA 95.65 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 NA NA NA K intron_retention alc,I_chr2R_5023501_5023700 chr2R - chr2R_5023501_5024456 chr2R_5023500_5023501;chr2R_5024456_5024457 chr2R_5023401_5023500;chr2R_5024457_5025265 1.15 1.22 1.27 6.73 0.00 1.79 0.00 2.08 1.82 0.00 2.47 3.33 4.62 0.00 1.98 2.33 0.00 5.48 1.47 2.08 2.50 1.79 0.00 0.00 0.00 0.00 3.80 3.57 2.22 0.00 0.00 1.80 0.00 1.03 0.00 2.78 0.00 0.00 1.01 1.38 0.88 0.00 0.00 0.00 0.00 1.90 1.15 1.42 1.38 1.49 0.00 0.00 0.00 0.00 1.12 1.15 1.72 0.50 K intron_retention loco,I_chr3R_18448629_18449211,I_chr3R_18456329_18462522 chr3R - chr3R_18446578_18446644 chr3R_18446577_18446578;chr3R_18446644_18446645 chr3R_18446509_18446577;chr3R_18446645_18446737 0.00 0.00 0.00 0.00 0.00 0.00 2.67 1.37 2.13 0.00 0.00 2.06 0.00 5.26 0.00 1.92 0.00 0.00 0.00 1.16 0.00 0.61 3.95 2.78 0.00 0.00 2.67 5.75 2.41 0.00 0.00 0.00 0.00 2.70 0.00 5.45 2.60 0.00 0.00 0.88 3.17 2.20 0.00 2.90 0.86 1.43 3.77 0.00 3.61 1.61 2.00 0.00 0.00 2.22 0.00 0.00 0.00 3.61 K jcn_only_AD CG32016,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_978516_978914;chr4_978516_978612 chr4_978516_978631 chr4_978478_978515;chr4_978915_978920 100.00 NA 97.30 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 NA NA 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K jcn_only_AD Rpb8 chr3L + chr3L_21722217_21722287 chr3L_21722224_21722287 chr3L_21722288_21722991;chr3L_21721921_21722216 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 NA 0.00 1.47 0.00 2.13 0.00 4.65 0.00 0.00 0.00 1.16 0.00 0.00 2.56 0.00 0.00 2.56 0.00 NA NA NA 0.00 NA NA 1.49 3.33 0.00 0.00 0.00 0.00 0.00 NA 1.03 0.00 0.00 4.35 2.56 2.63 NA 0.00 0.00 6.52 0.00 0.00 5.26 3.12 0.00 2.47 2.63 K intron_retention La chr2L - chr2L_20348536_20348703 chr2L_20348535_20348536;chr2L_20348703_20348704 chr2L_20348393_20348535;chr2L_20348704_20348878 97.75 97.52 96.97 99.59 100.00 99.03 99.13 97.99 99.60 98.35 100.00 98.91 98.25 98.18 98.02 98.80 98.85 98.88 96.80 98.04 96.39 94.64 97.16 98.13 97.39 98.99 97.08 96.39 98.11 96.10 98.11 97.69 96.44 98.35 97.56 98.95 95.38 97.42 99.41 98.32 96.73 98.12 96.00 96.46 96.31 94.57 94.17 96.57 98.82 97.14 97.75 97.18 98.05 97.27 98.29 97.14 97.69 96.17 K jcn_only_AA CG31731,I_chr2L_13786850_13786922 chr2L + chr2L_13784595_13784785 chr2L_13784595_13784756 chr2L_13784471_13784594;chr2L_13784786_13784986 0.00 0.00 0.00 11.84 2.00 0.00 5.45 0.93 0.00 4.17 0.00 2.41 2.27 0.00 0.00 0.00 0.00 0.00 0.00 2.22 2.44 2.50 2.86 0.00 9.09 6.12 0.00 3.85 0.00 0.00 2.67 NA NA 2.15 0.00 2.70 0.00 0.00 3.28 0.00 NA 0.00 0.00 0.00 NA 4.00 NA 0.00 0.88 NA 1.75 0.00 NA NA 1.45 0.00 4.35 NA K intron_retention Keap1 chr3R - chr3R_12902616_12903539 chr3R_12902615_12902616;chr3R_12903539_12903540 chr3R_12902299_12902615;chr3R_12903540_12903653 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.26 0.00 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 6.25 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA K cassette E_chr3R_7821802_7831079,Ect3 chr3R + chr3R_7825162_7826930 chr3R_7825162_7825486;chr3R_7825598_7826930 chr3R_7825487_7825597 chr3R_7825014_7825161;chr3R_7826931_7827152 5.41 8.33 5.71 5.56 NA 3.45 5.00 1.72 7.84 6.25 21.05 2.38 5.26 2.70 0.00 1.37 4.00 32.00 6.25 4.05 19.05 6.06 5.06 3.28 7.69 2.78 7.02 6.38 11.48 6.67 3.45 6.67 9.30 6.00 3.85 3.57 7.69 7.69 1.79 6.35 3.70 4.84 0.00 6.06 4.35 4.44 8.33 5.88 5.66 9.26 2.00 10.34 2.44 4.17 0.00 9.09 2.56 1.96 K jcn_only_AD Top2,I_chr2L_19452310_19453250,I_chr2L_19452316_19452538,I_chr2L_19452794_19453250 chr2L - chr2L_19452316_19453250 chr2L_19452316_19452538 chr2L_19452216_19452315;chr2L_19453251_19453350 0.47 0.79 0.55 0.00 0.64 0.00 0.47 0.82 0.00 0.00 0.00 0.35 0.00 0.00 0.52 0.00 0.00 1.65 0.61 0.00 0.00 2.50 0.00 0.00 0.82 0.00 1.18 0.00 1.67 0.97 2.94 0.00 1.60 0.00 0.00 0.00 0.64 1.75 0.52 0.52 0.00 0.00 0.71 0.00 2.70 1.59 1.41 2.02 1.10 1.59 0.50 0.00 0.00 0.00 0.51 1.23 0.00 0.00 K intron_retention CG18596,I_chr3R_18203637_18203690,I_chr3R_18209085_18209133 chr3R + chr3R_18203877_18203938 chr3R_18203876_18203877;chr3R_18203938_18203939 chr3R_18203691_18203876;chr3R_18203939_18204502 2.63 0.00 0.00 7.14 NA 0.00 0.00 14.29 7.69 0.00 0.00 2.38 11.54 0.00 0.00 8.00 0.00 0.00 3.85 7.69 0.00 5.45 6.06 8.70 7.41 0.00 8.57 5.26 19.05 0.00 6.25 0.00 10.81 5.00 0.00 2.70 0.00 0.00 8.33 7.84 0.00 6.12 NA 2.56 19.05 3.85 0.00 6.90 2.78 0.00 9.68 0.00 NA 0.00 6.25 0.00 0.00 0.00 K intron_retention CG32627,CG32628 chrX + chrX_13608769_13608856 chrX_13608768_13608769;chrX_13608856_13608857 chrX_13608710_13608768;chrX_13608857_13608992 100.00 NA NA NA NA NA 93.33 NA 100.00 NA NA 90.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention ald chr3R + chr3R_13499199_13499298 chr3R_13499198_13499199;chr3R_13499298_13499299 chr3R_13498643_13499198;chr3R_13499299_13499550 3.25 0.00 0.00 14.81 4.55 5.26 0.00 10.00 9.76 NA NA 5.88 0.00 0.00 3.85 5.00 0.00 5.56 0.00 3.28 4.35 6.67 4.44 5.41 0.00 0.00 3.23 4.17 7.41 0.00 0.00 0.00 0.00 2.70 0.00 3.33 4.76 0.00 0.00 4.55 0.00 0.00 NA 4.00 7.69 5.00 0.00 0.00 0.00 7.27 4.26 0.00 3.85 2.78 4.76 0.00 4.44 0.00 K intron_retention cenB1A chr3R + chr3R_18949110_18949164 chr3R_18949109_18949110;chr3R_18949164_18949165 chr3R_18947955_18949109;chr3R_18949165_18949936 0.00 0.00 0.78 0.51 0.00 0.00 0.50 0.42 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 2.33 0.00 0.00 1.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17698 chr3L + chr3L_23731285_23733260 chr3L_23731284_23731285;chr3L_23733260_23733261 chr3L_23731166_23731284;chr3L_23733261_23733289 26.04 NA NA 18.75 NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor noncoding_18164,F_chr3R_17192061_17200781,RI_chr3R_17193489_17193631 chr3R + chr3R_17193416_17193631;chr3R_17193489_17193631 chr3R_17193407_17193631 chr3R_17193632_17193731;chr3R_17193389_17193406 14.29 25.00 23.53 25.93 14.29 14.29 29.17 19.05 20.00 NA NA 19.23 14.29 13.33 25.00 13.04 14.29 10.00 21.43 14.81 27.27 NA 10.00 30.00 NA 7.69 12.50 14.29 14.29 NA 24.56 0.00 0.00 19.05 20.00 40.00 0.00 28.57 9.09 32.00 7.69 7.69 8.33 23.08 5.56 12.50 9.09 5.00 3.85 11.11 14.29 11.11 14.29 10.00 13.33 6.25 25.00 0.00 K intron_retention Ucp4A chrX + chrX_17739792_17740715 chrX_17739791_17739792;chrX_17740715_17740716 chrX_17739615_17739791;chrX_17740716_17740825 11.11 10.53 10.53 9.52 NA 7.69 7.69 11.76 15.00 NA 9.09 8.33 NA NA 9.09 11.76 6.25 14.29 27.27 15.15 16.67 26.32 14.29 0.00 11.76 NA 17.65 NA 20.00 9.52 15.79 11.76 7.41 14.81 22.22 NA 10.81 13.04 3.85 13.04 11.76 11.11 NA 7.41 9.68 3.70 0.00 17.65 10.34 0.00 16.67 NA 11.11 0.00 NA 9.09 15.38 15.00 K jcn_only_AA CG6701,RI_chr2R_9866395_9866446,RI_chr2R_9866896_9867532 chr2R - chr2R_9866395_9866446;chr2R_9865335_9866446 chr2R_9865355_9866446 chr2R_9866447_9866546;chr2R_9865150_9865334 99.30 99.31 100.00 99.28 100.00 99.45 98.08 99.41 99.52 97.87 98.70 99.04 97.93 99.47 98.62 100.00 99.39 99.46 99.51 99.71 98.63 99.38 100.00 99.32 98.99 99.55 97.35 100.00 99.27 99.30 95.81 95.83 98.05 99.65 97.80 100.00 98.88 97.58 100.00 98.55 100.00 98.96 98.73 99.43 93.22 98.72 100.00 98.37 100.00 98.18 97.73 100.00 100.00 100.00 99.13 98.25 100.00 99.01 K multi_cassette vap,RI_chrX_15897976_15899352,I_chrX_15897976_15899654,I_chrX_15898011_15899654,I_chrX_15898427_15899017,RI_chrX_15898427_15899654,RI_chrX_15899237_15899352,I_chrX_15899237_15899654 chrX - chrX_15898120_15899352 chrX_15898120_15898360;chrX_15898478_15899017;chrX_15899237_15899352 chrX_15898361_15898477;chrX_15899018_15899236 chrX_15897748_15898119;chrX_15899353_15899365 0.00 NA 0.00 NA NA NA 0.00 NA 7.14 NA NA 18.18 NA 0.00 NA 0.00 NA 0.00 0.00 18.18 NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA 0.00 14.29 NA NA NA NA NA 0.00 NA 4.35 0.00 NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention CG8270 chr3L + chr3L_6482514_6482569 chr3L_6482513_6482514;chr3L_6482569_6482570 chr3L_6482030_6482513;chr3L_6482570_6482962 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 8.00 13.33 NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA 6.67 NA K intron_retention Dif,I_chr2L_17414333_17414528,I_chr2L_17418395_17418487 chr2L - chr2L_17420114_17427655 chr2L_17420113_17420114;chr2L_17427655_17427656 chr2L_17420066_17420113;chr2L_17427656_17427991 0.00 0.00 NA 0.00 NA NA 3.45 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.85 NA NA 0.00 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 K alternative_donor CG3632,RI_chrX_16195880_16196242 chrX + chrX_16190824_16191682;chrX_16190917_16191682 chrX_16190941_16191682 chrX_16191683_16191751;chrX_16190763_16190823 50.00 50.00 54.55 38.46 40.00 37.50 63.16 50.00 69.57 NA 50.00 31.58 50.00 50.00 33.33 50.00 50.00 50.00 33.33 60.00 44.44 66.67 62.50 50.00 57.14 20.00 50.00 57.14 42.86 57.14 77.78 NA 40.00 42.11 42.86 50.00 28.57 37.50 50.00 42.86 NA 52.94 42.86 62.50 NA 71.43 75.00 66.67 45.00 33.33 45.45 37.50 40.00 NA 55.56 40.00 NA NA K intron_retention Cdep,I_chr3R_749200_749265 chr3R + chr3R_749200_749253 chr3R_749199_749200;chr3R_749253_749254 chr3R_749100_749199;chr3R_749254_749414 0.00 0.00 1.75 2.90 0.00 0.00 0.00 2.33 2.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 1.49 4.55 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor att-ORFA,att-ORFB,RI_chr3R_16380642_16382206 chr3R - chr3R_16380642_16383128 chr3R_16380642_16382206 chr3R_16380542_16380641;chr3R_16383129_16383136 12.00 13.33 10.53 13.64 7.69 10.00 14.29 7.69 14.71 4.76 5.56 19.05 20.00 15.38 13.33 16.67 18.18 14.29 23.08 13.89 4.76 16.67 9.52 9.09 18.18 15.38 13.33 16.67 13.04 10.00 10.53 15.00 11.76 12.00 11.76 21.05 9.52 12.50 3.57 7.32 4.76 22.22 15.38 7.14 4.17 9.09 4.17 12.00 18.18 12.50 8.33 7.69 0.00 7.14 12.50 12.50 5.00 4.08 K intron_retention I_chr2L_71805_74902,galectin,I_chr2L_72082_75077,RI_chr2L_72978_75077,RI_chr2L_73693_75077,RI_chr2L_74573_75077 chr2L + chr2L_73693_73819 chr2L_73692_73693;chr2L_73819_73820 chr2L_73593_73692;chr2L_73820_73849 50.00 NA NA 37.50 NA NA 47.83 76.47 47.06 NA 60.00 58.82 NA NA 58.33 NA NA 36.36 NA 37.93 69.23 NA NA 36.36 NA NA 69.23 60.00 NA NA 40.00 NA 50.00 52.94 NA 45.45 NA NA NA 50.00 NA 44.44 NA 28.57 NA NA NA 69.23 66.67 NA NA NA NA NA NA NA NA 33.33 K intron_retention Pect,I_chr2L_13207997_13208109,E_chr2L_13208285_13210076 chr2L + chr2L_13208778_13209492 chr2L_13208777_13208778;chr2L_13209492_13209493 chr2L_13208665_13208777;chr2L_13209493_13209499 78.57 84.38 73.08 89.77 69.05 74.47 91.07 81.82 80.00 85.19 84.62 71.72 35.45 67.74 69.64 78.82 75.00 70.73 81.13 71.85 80.00 59.32 75.56 76.00 80.00 84.44 84.21 73.58 83.33 66.07 76.60 72.41 68.18 81.01 62.96 89.47 77.42 80.00 79.66 81.25 79.07 78.95 78.57 80.95 78.12 66.67 81.48 62.16 85.06 81.13 74.12 75.47 92.59 69.39 68.57 76.67 87.93 81.08 K intron_retention Syx4,I_chrX_2635555_2635621,I_chrX_2636831_2636971 chrX - chrX_2633579_2633742 chrX_2633578_2633579;chrX_2633742_2633743 chrX_2633330_2633578;chrX_2633743_2633794 6.67 14.29 NA NA NA NA NA 17.65 16.67 NA NA NA NA NA 6.67 NA NA NA 7.14 12.50 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 4.76 NA NA NA NA NA 0.00 NA 4.35 NA NA NA 0.00 NA NA 7.69 NA NA NA NA NA NA 6.67 NA 0.00 K intron_retention PRL-1,I_chr2L_16247385_16247503,I_chr2L_16250028_16250080 chr2L - chr2L_16247385_16247503 chr2L_16247384_16247385;chr2L_16247503_16247504 chr2L_16247285_16247384;chr2L_16247504_16247571 8.33 NA NA 11.11 NA NA NA 10.53 10.81 NA 6.06 15.00 22.22 NA 25.00 4.76 NA NA 7.69 12.50 8.33 0.00 0.00 5.56 NA NA NA NA NA NA 0.00 NA 0.00 3.03 NA 4.76 13.33 NA 6.67 9.09 NA 7.50 14.29 10.00 NA NA NA NA 22.73 12.50 NA NA 0.00 NA 14.29 NA 5.56 NA K alternative_donor CG2017 chr3R - chr3R_1686127_1687468;chr3R_1686127_1687891;chr3R_1686127_1688092 chr3R_1686127_1687510 chr3R_1685454_1686126;chr3R_1688093_1688097 16.67 20.51 17.39 13.33 8.11 29.41 13.04 11.86 16.85 18.42 21.95 12.35 18.92 10.26 16.67 16.33 9.38 18.60 16.67 17.89 29.55 24.71 21.25 10.94 16.00 11.76 13.92 10.00 16.46 19.35 15.73 13.16 19.67 20.63 21.43 13.21 13.41 22.58 16.42 18.75 18.75 15.85 18.75 16.92 23.40 18.64 23.91 26.92 12.86 13.79 17.19 11.32 10.53 15.22 10.20 10.91 8.57 25.00 K intron_retention fwd,I_chr3L_310787_310918,RI_chr3L_319514_319746 chr3L - chr3L_307457_307511 chr3L_307456_307457;chr3L_307511_307512 chr3L_307319_307456;chr3L_307512_307630 0.00 0.00 0.00 3.30 0.00 0.00 6.90 4.44 7.41 0.00 0.00 2.50 2.33 0.00 2.00 0.00 0.00 0.00 0.00 1.39 0.00 2.44 8.20 0.00 0.00 0.00 18.18 0.00 8.70 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 7.14 2.63 4.69 0.00 1.06 0.00 5.00 0.00 0.00 0.00 0.00 1.05 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Nedd4,I_chr3L_17534127_17534409,I_chr3L_17534504_17535990,I_chr3L_17535485_17536604,I_chr3L_17536186_17536604,I_chr3L_17536713_17536777,I_chr3L_17536813_17536863 chr3L + chr3L_17534504_17536604 chr3L_17534503_17534504;chr3L_17536604_17536605 chr3L_17534419_17534503;chr3L_17536605_17536704 0.00 0.00 0.00 0.98 1.41 0.00 3.97 0.61 0.84 0.00 1.35 1.46 2.60 0.00 1.06 2.07 1.41 2.25 0.00 1.14 0.00 1.75 1.05 2.44 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 K intron_retention CG4829,I_chrX_16717240_16717547 chrX + chrX_16717240_16717889 chrX_16717239_16717240;chrX_16717889_16717890 chrX_16717140_16717239;chrX_16717890_16718151 97.36 96.28 97.26 99.77 66.09 59.10 94.78 98.58 97.35 86.93 98.31 93.95 97.45 97.35 95.39 99.15 98.58 95.52 97.75 95.99 95.95 100.00 95.92 95.08 95.03 99.60 91.06 84.00 99.39 99.61 97.44 99.62 99.12 98.90 96.63 100.00 96.76 96.45 97.36 94.39 97.48 98.73 98.25 98.19 98.95 96.36 96.40 98.55 97.00 93.66 94.72 97.70 98.48 97.70 98.82 96.35 98.39 99.22 K alternative_acceptor lds,I_chr3R_3748184_3748242 chr3R + chr3R_3748184_3748268 chr3R_3748184_3748242 chr3R_3748084_3748183;chr3R_3748269_3748342 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 2.73 0.00 0.00 0.00 0.00 0.00 0.00 1.02 2.38 0.00 0.00 0.00 0.00 1.54 0.00 2.06 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 2.67 K alternative_acceptor CG2219,noncoding_20558,RI_chr4_202143_202194 chr4 - chr4_202136_202194 chr4_202143_202194 chr4_202195_202294;chr4_202043_202135 66.29 65.38 72.73 67.86 47.62 70.83 63.89 67.24 64.04 75.00 60.71 70.37 69.57 74.19 65.38 71.43 54.84 66.67 66.67 72.92 76.19 80.00 81.25 69.23 57.14 NA 68.18 70.00 66.67 63.64 59.09 63.64 56.67 64.18 65.91 61.54 58.33 61.54 64.00 64.18 71.88 65.31 69.23 73.68 71.43 65.06 68.97 64.71 63.16 70.00 70.00 61.54 67.44 64.81 50.00 63.83 68.97 64.95 K alternative_acceptor CG9086,CEI_chrX_16859981_16861527,I_chrX_16861895_16862053 chrX - chrX_16857754_16861527 chrX_16859981_16861527 chrX_16861528_16861627;chrX_16857742_16857753 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA K intron_retention bif,I_chrX_11581793_11583233,REI_chrX_11585551_11586831 chrX + chrX_11583577_11587579 chrX_11583576_11583577;chrX_11587579_11587580 chrX_11583234_11583576;chrX_11587580_11588761 1.82 3.12 2.60 0.00 6.15 2.35 4.84 0.00 3.41 0.00 0.00 3.40 6.06 0.00 5.49 4.69 4.17 0.00 0.00 2.73 4.62 2.16 2.47 0.00 3.03 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.72 5.77 0.00 0.00 2.92 0.00 2.24 2.42 0.00 3.82 1.82 2.90 0.00 1.60 1.03 0.31 2.01 0.00 1.37 2.04 2.67 0.00 1.32 2.27 2.35 0.00 K intron_retention CG13917 chr3L + chr3L_1599915_1599978 chr3L_1599914_1599915;chr3L_1599978_1599979 chr3L_1599515_1599914;chr3L_1599979_1600320 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 10.00 NA NA NA NA NA NA NA NA 0.00 K jcn_only_AA mura,RI_chr3R_5373093_5377292,I_chr3R_5375533_5376618,RI_chr3R_5380786_5380850 chr3R - chr3R_5367732_5372519 chr3R_5368647_5372519 chr3R_5372520_5372875;chr3R_5367401_5367731 48.36 NA NA 53.85 NA NA NA 43.48 38.10 37.50 NA NA NA NA NA 52.00 NA NA NA 45.00 NA 62.07 NA NA NA NA NA NA 48.15 NA NA NA 74.07 NA NA 54.17 NA NA NA NA NA 34.48 NA 48.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA Nipped-B,I_chr2R_580301_580515,I_chr2R_580453_580515,I_chr2R_580989_582555,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_580453_580515 chr2R_580456_580515 chr2R_580516_580582;chr2R_580368_580452 100.00 97.44 100.00 97.94 100.00 100.00 98.69 98.68 100.00 100.00 100.00 99.11 100.00 98.57 96.55 99.07 98.39 100.00 98.75 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 97.10 98.20 99.03 100.00 99.17 100.00 100.00 100.00 NA NA 97.18 100.00 98.35 100.00 98.33 100.00 98.95 100.00 100.00 98.45 100.00 98.51 100.00 100.00 100.00 100.00 96.43 100.00 99.30 K intron_retention ATPsyn-d chr3R + chr3R_14920797_14921118 chr3R_14920796_14920797;chr3R_14921118_14921119 chr3R_14920714_14920796;chr3R_14921119_14921792 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.52 0.00 2.13 0.00 0.00 6.12 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention rok,RI_chrX_16526333_16526477 chrX - chrX_16521501_16521628 chrX_16521500_16521501;chrX_16521628_16521629 chrX_16521334_16521500;chrX_16521629_16521903 23.29 24.53 29.03 23.91 18.42 23.26 45.95 28.85 23.75 16.67 22.73 25.64 28.57 30.00 33.33 24.32 24.14 35.48 23.08 27.16 31.25 30.14 13.04 17.50 25.00 30.56 19.74 21.88 30.77 15.69 28.57 30.77 17.39 19.64 30.30 55.56 17.52 20.51 20.45 12.31 12.00 23.29 34.48 18.33 11.54 23.08 12.00 10.71 28.17 18.18 18.92 24.07 21.21 16.22 37.50 16.33 16.67 26.32 K intron_retention mrj,I_chr2R_12093585_12095708,I_chr2R_12093585_12096954,I_chr2R_12093585_12097211,I_chr2R_12093585_12097256,I_chr2R_12093585_12097522,I_chr2R_12093733_12097526,RI_chr2R_12093733_12108627,tRNA:CR30237,tRNA:CR30238,I_chr2R_12108655_12109044,I_chr2R_12108697_12109174 chr2R - chr2R_12093733_12097694 chr2R_12093732_12093733;chr2R_12097694_12097695 chr2R_12093706_12093732;chr2R_12097695_12097877 36.36 NA NA 16.67 NA NA 41.67 28.57 37.04 NA NA 30.77 33.33 40.00 15.38 38.89 47.06 NA 36.36 31.58 NA NA 63.64 NA NA 36.36 50.00 77.78 NA NA 21.43 NA NA 26.09 NA 50.00 NA NA NA NA NA 39.13 NA NA NA NA NA NA 25.00 NA NA NA NA NA 33.33 NA NA NA K jcn_only_AD CG3558,RI_chr2L_2995071_2997790 chr2L + chr2L_2993410_2993544;chr2L_2993444_2993544;chr2L_2993378_2993544 chr2L_2993464_2993544 chr2L_2993545_2994408;chr2L_2993028_2993377 0.84 0.00 1.41 1.85 0.00 0.00 1.45 0.00 0.64 0.00 0.00 0.91 0.00 0.00 0.00 0.80 0.00 0.00 3.45 0.76 0.00 3.53 3.08 3.70 3.03 5.13 2.17 3.45 15.04 1.08 1.49 0.00 0.88 0.67 5.26 1.82 2.33 0.00 2.22 1.52 0.00 0.00 0.00 1.15 0.00 1.87 0.00 2.81 1.48 2.63 0.00 0.00 0.00 NA 2.50 0.00 2.78 0.00 K jcn_only_AD RpL15 chr3LHet + chr3LHet_2398018_2398127;chr3LHet_2397925_2398127;chr3LHet_2397992_2398127;chr3LHet_2398060_2398127;chr3LHet_2397841_2398127;chr3LHet_2398002_2398127;chr3LHet_2397820_2398127;chr3LHet_2398053_2398127 chr3LHet_2397859_2398127 chr3LHet_2398128_2398454;chr3LHet_2397802_2397819 3.85 5.41 9.72 1.34 3.12 4.35 15.38 2.42 18.31 3.12 5.71 14.04 21.43 15.62 4.62 11.76 1.75 5.45 5.15 6.67 10.26 0.58 0.00 4.35 4.55 6.38 0.00 1.29 1.32 1.79 1.56 1.24 0.68 0.86 0.00 2.33 4.00 NA 8.70 0.21 1.10 4.44 3.37 0.00 1.39 3.32 9.09 0.96 4.90 3.70 7.69 17.39 0.24 0.00 6.84 6.25 7.14 0.96 K intron_retention CG6412 chr2L - chr2L_17500284_17500491 chr2L_17500283_17500284;chr2L_17500491_17500492 chr2L_17500035_17500283;chr2L_17500492_17500981 3.85 3.57 6.38 8.06 0.00 6.52 0.00 9.80 8.22 2.56 0.00 3.26 6.06 2.50 4.44 3.57 6.67 5.00 2.56 4.00 0.00 4.35 2.78 8.57 6.82 0.00 3.33 0.00 4.84 4.35 7.41 0.00 0.00 2.78 4.08 6.00 3.61 4.08 2.88 2.00 0.00 4.30 0.00 7.27 0.00 1.06 7.14 2.78 7.69 3.85 5.06 3.23 4.40 3.95 9.52 5.26 0.73 0.00 K intron_retention CG1309 chr3L + chr3L_4260058_4260108 chr3L_4260057_4260058;chr3L_4260108_4260109 chr3L_4259744_4260057;chr3L_4260109_4260260 0.00 8.33 0.00 0.00 0.00 0.00 0.00 5.26 2.27 NA 0.00 5.88 0.00 10.71 0.00 0.00 0.00 0.00 0.00 6.56 4.76 5.26 0.00 4.08 0.00 4.00 5.77 4.44 0.00 0.00 0.00 0.00 3.70 2.27 0.00 2.56 5.41 0.00 0.00 6.82 0.00 1.59 0.00 0.00 0.00 0.00 0.00 6.25 4.65 0.00 0.00 0.00 3.23 0.00 10.34 6.67 6.38 3.77 K intron_retention CG15097,I_chr2R_14712075_14712152,I_chr2R_14713403_14713523 chr2R - chr2R_14712306_14713001 chr2R_14712305_14712306;chr2R_14713001_14713002 chr2R_14712209_14712305;chr2R_14713002_14713185 14.32 NA NA 15.38 NA NA 20.00 13.33 6.67 NA NA 25.00 NA NA NA NA NA NA NA 15.00 NA 21.43 NA 20.00 11.11 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 10.53 NA NA 5.26 NA 13.64 NA NA NA NA 26.67 NA NA NA NA NA NA NA NA NA K cassette syd,I_chr3L_7924891_7925400 chr3L - chr3L_7919938_7920859 chr3L_7919938_7920587;chr3L_7920680_7920859 chr3L_7920588_7920679 chr3L_7919673_7919937;chr3L_7920860_7920920 5.00 NA NA NA NA NA NA 0.00 4.17 NA NA 11.76 6.67 NA NA NA 6.67 NA NA 3.23 NA 8.33 16.67 5.88 NA NA 0.00 NA 4.35 NA 4.35 8.33 NA 4.76 15.38 11.76 4.17 NA NA NA 6.25 4.35 NA 6.25 6.25 5.00 5.56 3.85 4.76 5.00 4.35 NA NA NA NA 10.53 NA 4.76 K intron_retention RI_chr3L_21188731_21188785,CG33054 chr3L - chr3L_21190591_21190648 chr3L_21190590_21190591;chr3L_21190648_21190649 chr3L_21190582_21190590;chr3L_21190649_21190737 100.00 100.00 100.00 100.00 NA 100.00 100.00 86.36 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG3919 chr3L + chr3L_14405237_14405355 chr3L_14405285_14405355 chr3L_14405356_14405772;chr3L_14405135_14405236 4.55 NA NA 3.23 NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA 8.57 NA 0.00 NA NA NA NA NA NA 47.83 NA NA NA 4.17 8.70 NA NA NA NA 10.00 4.55 NA 10.34 NA NA NA NA NA 12.00 NA NA 13.04 NA 4.00 NA NA NA NA 4.48 K mutually_exclusive spz chr3R - chr3R_22892388_22892450,chr3R_22892607_22894865;chr3R_22892388_22892843,chr3R_22892922_22894865 chr3R_22892388_22893079,chr3R_22893218_22894865 chr3R_22892451_22892606;chr3R_22892844_22892921 chr3R_22893080_22893217 chr3R_22892330_22892387;chr3R_22894866_22895053 0.00 0.00 0.00 1.74 1.89 0.00 0.00 0.00 1.80 2.94 5.36 0.00 0.00 0.00 2.33 2.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.17 0.00 3.85 0.00 0.00 0.00 1.19 2.94 0.00 0.00 1.45 7.14 1.28 2.78 0.00 1.42 3.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 K jcn_only_AD path,I_chr3L_9492315_9494012,noncoding_11668 chr3L - chr3L_9490312_9492121 chr3L_9490312_9490393 chr3L_9490216_9490311 22.52 8.57 38.98 32.81 34.09 32.43 37.04 26.25 20.69 35.71 36.00 36.17 62.00 37.14 22.22 4.17 36.73 18.75 28.30 38.00 41.67 21.74 20.75 14.04 17.86 37.50 21.31 NA 30.00 NA 27.40 13.04 23.68 31.25 11.54 23.81 21.74 14.29 8.51 18.87 10.81 26.42 26.19 4.17 NA 13.46 NA 15.62 22.83 6.45 22.22 6.06 NA 27.27 39.06 14.81 10.00 9.09 K jcn_only_AA fra chr2R + chr2R_8445281_8445949;chr2R_8445281_8446375 chr2R_8445281_8445922 chr2R_8445263_8445280;chr2R_8446376_8446583 75.72 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 71.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA 83.33 NA 36.36 NA NA NA NA NA NA NA K intron_retention gish chr3R + chr3R_12100604_12100675 chr3R_12100603_12100604;chr3R_12100675_12100676 chr3R_12100535_12100603;chr3R_12100676_12100891 93.94 94.35 93.94 92.41 93.83 96.04 93.90 94.54 92.83 84.27 96.51 93.20 91.30 93.40 96.85 95.65 93.75 95.79 92.38 93.27 95.45 96.85 95.57 94.52 97.25 99.04 95.65 94.44 96.58 89.55 91.43 96.15 91.74 94.58 93.70 95.20 95.39 93.86 96.13 89.11 95.00 96.08 93.83 90.65 84.21 88.19 95.60 90.91 93.30 95.18 96.11 88.76 89.23 94.12 96.97 91.95 90.41 85.83 K alternative_donor gw,RI_chr4_679135_679703,I_chr4_679135_680299,RI_chr4_679135_680693,I_chr4_679135_681047,I_chr4_679135_681671 chr4 - chr4_679135_680185;chr4_679135_680594;chr4_679135_680546;chr4_679135_680270 chr4_679135_680503 chr4_679035_679134;chr4_680595_680603 0.00 0.00 0.00 6.67 0.00 0.00 5.88 4.35 0.00 NA 0.00 7.14 14.29 11.11 0.00 5.26 0.00 25.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 5.56 0.00 0.00 0.00 0.00 NA 0.00 NA 7.69 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 16.67 NA NA NA K alternative_acceptor RpS18,CG8908,EI_chr2R_16151918_16151997,I_chr2R_16151918_16152036,I_chr2R_16151938_16152065,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151938_16152065;chr2R_16151938_16151997;chr2R_16151938_16152006 chr2R_16151938_16152036 chr2R_16151852_16151937;chr2R_16152066_16152066 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.02 0.02 0.00 0.00 0.03 0.01 0.00 0.00 0.02 0.02 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.03 0.03 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.02 K jcn_only_AD CG8067,RI_chr2R_9871650_9871702 chr2R + chr2R_9871646_9871702 chr2R_9871650_9871702 chr2R_9871703_9871802;chr2R_9871550_9871645 11.88 16.67 7.41 5.45 3.85 NA 5.08 5.66 10.61 NA 8.82 8.89 16.67 20.00 15.79 2.86 NA 10.34 6.82 11.11 23.81 8.33 12.50 14.29 NA 15.38 14.29 16.67 NA 12.00 31.25 NA 4.55 7.69 NA 20.00 11.76 NA 12.50 5.56 NA 7.69 NA NA 8.00 12.00 16.67 NA 14.52 NA 14.71 18.18 NA NA 0.00 14.29 10.00 22.22 K intron_retention CG3732,E_chr2R_18528611_18528868 chr2R - chr2R_18527359_18527435 chr2R_18527358_18527359;chr2R_18527435_18527436 chr2R_18527042_18527358;chr2R_18527436_18527679 0.98 0.00 0.00 5.41 0.00 0.00 0.00 2.70 1.30 3.39 0.00 0.00 0.00 6.90 0.00 0.00 0.00 0.00 2.86 0.00 0.00 6.94 2.70 2.33 0.00 0.00 3.39 2.17 7.14 1.41 3.57 0.00 1.94 0.00 1.96 0.00 0.98 1.61 2.94 0.94 0.00 2.35 4.35 0.00 3.64 0.00 0.00 2.01 3.03 4.17 1.28 3.92 1.92 1.45 0.00 0.00 0.00 0.00 K alternative_acceptor Eb1,RI_chr2R_2640290_2642206,I_chr2R_2640494_2642206,I_chr2R_2641187_2642206,RI_chr2R_2641944_2642025,I_chr2R_2641954_2642206,I_chr2R_2642491_2642549 chr2R + chr2R_2641944_2642206 chr2R_2641944_2642025 chr2R_2641854_2641943;chr2R_2642207_2642306 1.47 0.78 1.53 1.50 1.13 1.08 2.48 1.88 1.48 0.62 1.78 1.94 2.22 2.38 1.13 1.25 2.08 1.07 1.38 1.24 1.47 4.34 1.02 1.21 1.78 1.52 2.95 4.01 1.31 1.43 1.84 1.70 1.66 1.27 1.73 1.72 1.45 1.53 1.94 2.15 1.90 1.40 1.34 2.35 1.27 1.41 0.86 1.01 1.85 2.30 1.39 1.80 0.22 1.04 1.42 1.44 0.64 0.77 N intron_retention Clic chrX - chrX_13708019_13715957 chrX_13708018_13708019;chrX_13715957_13715958 chrX_13707908_13708018;chrX_13715958_13716374 100.00 100.00 100.00 20.48 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 61.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention CG6903 chrX + chrX_4813627_4813931 chrX_4813626_4813627;chrX_4813931_4813932 chrX_4813487_4813626;chrX_4813932_4814053 4.26 3.23 1.59 3.61 0.00 4.65 8.33 1.11 5.71 7.69 0.00 5.26 6.06 4.44 3.57 2.86 0.00 3.92 8.00 5.41 4.17 10.00 2.78 5.33 10.42 0.00 8.57 8.33 14.81 5.13 7.69 8.33 0.00 5.56 6.90 8.00 5.80 3.92 0.00 4.69 0.00 4.35 0.00 4.62 4.26 1.67 3.85 0.00 4.12 7.27 8.22 0.00 2.70 8.00 0.00 2.38 0.00 4.00 K alternative_acceptor I_chrX_15680663_15680821,Rhp chrX + chrX_15685936_15686020 chrX_15685936_15685987 chrX_15685495_15685935;chrX_15686021_15686177 0.00 0.00 NA 0.00 NA NA 0.00 0.00 3.12 NA NA 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 K intron_retention CG1578,I_chrX_11705375_11705673,I_chrX_11705375_11707320,RI_chrX_11709573_11710335,I_chrX_11710380_11710454 chrX - chrX_11705375_11707320 chrX_11705374_11705375;chrX_11707320_11707321 chrX_11705275_11705374;chrX_11707321_11707420 22.48 NA NA 0.00 NA NA NA NA 21.43 NA NA 23.53 30.77 NA NA NA NA NA NA 17.39 NA 13.64 NA NA NA NA 23.53 NA 25.00 25.00 NA NA NA NA NA NA 21.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Magi,I_chr2R_17020420_17029043,I_chr2R_17026738_17029359 chr2R - chr2R_17020168_17020232 chr2R_17020167_17020168;chr2R_17020232_17020233 chr2R_17018154_17020167;chr2R_17020233_17020419 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Mnt chrX + chrX_3587966_3592777;chrX_3587966_3592372;chrX_3587966_3592774 chrX_3587966_3592150 chrX_3587244_3587965;chrX_3592778_3593060 92.59 94.74 83.87 91.43 86.96 75.86 79.07 97.37 93.33 87.50 90.00 100.00 94.74 80.77 90.62 93.94 100.00 85.00 100.00 96.00 94.74 92.59 89.66 95.24 94.12 95.00 95.45 94.12 93.75 89.29 92.59 87.50 96.43 95.12 93.75 95.24 87.18 94.12 79.41 91.67 100.00 92.59 90.48 96.30 80.00 90.91 88.89 96.30 86.27 75.00 91.30 81.25 90.00 71.43 93.33 100.00 100.00 85.71 K intron_retention CG31688,I_chr2L_20432730_20436956 chr2L + chr2L_20429162_20431923 chr2L_20429161_20429162;chr2L_20431923_20431924 chr2L_20429027_20429161;chr2L_20431924_20432729 0.00 8.00 0.00 0.00 0.00 0.00 5.77 1.85 5.43 NA 0.00 1.61 0.00 5.13 0.00 5.88 6.67 6.45 4.65 0.00 0.00 0.00 0.00 0.00 NA 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 NA 0.00 1.32 NA 3.57 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K alternative_acceptor CG8272,RI_chr2R_4777288_4777363 chr2R - chr2R_4777288_4777363 chr2R_4777301_4777363 chr2R_4777364_4777463;chr2R_4777188_4777287 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 90.00 NA NA 87.50 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA 87.50 NA NA NA NA K intron_retention CG40191,I_chr2RHet_392279_392824 chr2RHet + chr2RHet_392686_392824 chr2RHet_392685_392686;chr2RHet_392824_392825 chr2RHet_391976_392685;chr2RHet_392825_392923 50.00 52.63 46.67 79.31 NA 23.53 63.64 52.38 65.00 75.00 63.64 51.22 42.86 38.46 30.77 50.94 46.67 23.08 32.00 34.62 NA NA 47.06 44.00 NA NA 17.39 NA NA NA 34.62 61.54 NA 54.05 45.83 NA NA 35.71 50.00 76.19 30.77 54.55 52.94 66.67 NA 31.82 40.00 72.73 43.48 55.00 50.00 59.09 42.86 39.13 52.63 50.00 40.00 76.92 K intron_retention Gyk,I_chr3L_203620_207231,I_chr3L_207277_208117 chr3L - chr3L_203620_205367 chr3L_203619_203620;chr3L_205367_205368 chr3L_203520_203619;chr3L_205368_205472 5.88 6.06 10.00 18.52 11.11 7.41 5.26 11.90 6.90 0.00 NA 10.20 11.76 5.00 19.35 13.89 11.11 16.67 15.38 7.78 0.00 7.41 2.27 5.88 7.41 8.57 6.67 NA 6.45 0.00 7.14 2.94 2.86 4.44 4.17 4.88 0.00 0.00 0.00 7.55 4.17 11.11 13.04 5.41 2.17 5.77 5.26 3.51 10.00 4.35 2.70 3.33 0.00 10.00 6.67 5.56 3.92 1.15 K intron_retention mRpL20,I_chr3L_13010705_13010775,RI_chr3L_13010729_13010775 chr3L - chr3L_13010713_13010775 chr3L_13010712_13010713;chr3L_13010775_13010776 chr3L_13010629_13010712;chr3L_13010776_13010875 0.00 0.00 2.08 3.23 0.00 0.00 0.00 4.44 3.28 0.00 0.00 0.00 3.70 0.00 2.13 2.70 0.00 1.72 0.00 1.68 0.00 NA 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 2.44 0.00 5.56 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.70 0.00 0.00 0.00 0.00 2.53 4.17 3.92 0.00 4.17 0.00 2.08 2.08 0.00 3.39 K intron_retention l(1)1Bi chrX + chrX_524243_524305 chrX_524242_524243;chrX_524305_524306 chrX_523859_524242;chrX_524306_524677 0.00 NA 0.00 NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA 0.00 5.56 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 0.00 K jcn_only_AD p53,CG17119,sav chr3R - chr3R_18878922_18879303 chr3R_18878922_18879078 chr3R_18878845_18878921;chr3R_18879304_18879498 100.00 NA NA NA NA NA NA NA 89.29 NA NA 100.00 NA NA NA 100.00 NA NA NA 97.22 NA NA 90.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 88.89 NA NA NA NA NA NA 97.14 NA 100.00 NA NA NA NA NA 100.00 NA K intron_retention CPTI,I_chr2R_6358255_6358734,I_chr2R_6358255_6359122,RI_chr2R_6358779_6358944,I_chr2R_6360956_6365128 chr2R - chr2R_6358255_6358718 chr2R_6358254_6358255;chr2R_6358718_6358719 chr2R_6358234_6358254;chr2R_6358719_6358778 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Cdk4,RI_chr2R_12471503_12471656 chr2R + chr2R_12467202_12468346;chr2R_12467432_12468346;chr2R_12467275_12468346;chr2R_12467474_12468346;chr2R_12467225_12468346;chr2R_12467227_12468346;chr2R_12467261_12468346;chr2R_12467039_12468346 chr2R_12467241_12468346 chr2R_12468347_12468520;chr2R_12467030_12467038 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG31159 chr3R + chr3R_18441463_18441528 chr3R_18441463_18441523 chr3R_18440964_18441462;chr3R_18441529_18441737 60.00 NA NA 58.33 NA NA NA 66.67 70.59 NA NA NA NA NA NA 33.33 NA NA NA 75.00 NA 60.00 NA NA NA NA 77.78 NA NA NA 33.33 NA 75.00 60.00 NA NA NA NA NA 58.82 NA 75.00 NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA K cassette Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8455204_8456400 chr3L_8455204_8456135;chr3L_8456338_8456400 chr3L_8456136_8456337 chr3L_8455194_8455203;chr3L_8456401_8460667 95.80 90.00 100.00 94.29 76.92 91.67 100.00 100.00 96.67 100.00 88.89 86.21 91.67 91.67 90.91 95.45 93.33 85.71 93.33 100.00 92.31 88.89 91.67 94.44 88.89 90.91 100.00 NA 92.31 100.00 90.91 100.00 100.00 96.30 100.00 100.00 88.89 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 88.46 NA 93.75 100.00 83.33 85.71 94.74 100.00 NA 100.00 K intron_retention Tsp42Ef,I_chr2R_2912947_2914327 chr2R + chr2R_2912947_2914488 chr2R_2912946_2912947;chr2R_2914488_2914489 chr2R_2912847_2912946;chr2R_2914489_2914662 1.15 0.00 1.61 0.00 0.00 0.00 1.68 1.95 1.27 2.86 2.41 2.04 0.00 1.15 1.63 1.43 0.00 0.00 0.00 1.00 2.11 4.81 0.89 2.27 2.38 4.30 0.00 4.55 1.90 1.54 0.00 2.70 2.34 0.77 1.56 0.76 1.61 1.65 1.09 1.75 0.00 1.28 1.27 1.14 0.57 1.33 0.00 3.45 1.06 0.69 1.43 0.00 0.93 1.08 0.79 0.53 0.00 0.00 K alternative_donor pgant6 chr3L + chr3L_2782556_2782737;chr3L_2782414_2782737 chr3L_2782497_2782737 chr3L_2782738_2783472;chr3L_2782330_2782413 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention mip120,RI_chr2R_9394299_9395019,EfTuM chr2R + chr2R_9395164_9395219 chr2R_9395163_9395164;chr2R_9395219_9395220 chr2R_9395087_9395163;chr2R_9395220_9396130 9.30 9.30 10.87 28.99 11.63 12.20 13.64 16.22 7.29 7.78 14.29 10.31 8.33 11.63 16.28 11.94 7.27 7.58 13.64 13.21 11.54 2.30 10.71 6.67 25.37 8.77 25.68 31.21 7.94 2.14 9.90 9.46 2.49 15.66 5.75 9.41 7.69 8.16 9.09 6.34 18.28 7.38 8.89 5.56 3.79 4.88 7.95 6.56 15.22 11.11 11.76 8.64 3.70 9.52 14.86 5.61 4.64 4.62 K jcn_only_AD CG9267,noncoding_2949,RI_chr2L_13445398_13445475 chr2L - chr2L_13445398_13445479 chr2L_13445398_13445455 chr2L_13445298_13445397;chr2L_13445480_13445575 0.00 0.00 0.00 0.00 NA NA 0.00 2.44 0.00 NA NA 0.00 0.00 0.00 0.00 2.44 NA NA 4.00 1.89 NA 0.00 0.00 0.00 3.45 0.00 5.13 0.00 NA NA 7.50 NA NA 0.00 8.00 0.00 0.00 0.00 3.03 0.00 3.33 0.00 NA 0.00 NA 0.00 0.00 0.00 3.64 0.00 0.00 0.00 0.00 4.17 0.00 2.50 8.00 2.44 K mutually_exclusive ens,I_chr3L_4130719_4131120 chr3L - chr3L_4127163_4128613,chr3L_4128974_4131120;chr3L_4127163_4129650,chr3L_4129789_4131120 chr3L_4127163_4130388,chr3L_4130644_4131120 chr3L_4128614_4128973;chr3L_4129651_4129788 chr3L_4130389_4130643 chr3L_4126989_4127162;chr3L_4131121_4131220 1.20 1.61 2.08 1.32 0.00 0.00 1.79 1.45 0.89 0.00 1.85 1.16 0.00 2.33 1.92 3.23 2.08 0.00 0.00 1.10 2.27 0.92 1.02 1.39 1.67 0.00 1.39 0.00 0.00 1.54 1.59 2.86 1.22 2.53 1.75 2.74 0.87 1.22 0.00 0.89 0.00 0.90 2.44 1.20 0.00 1.85 0.00 1.16 1.18 0.00 1.14 1.67 0.00 0.00 1.89 1.85 0.00 2.22 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2392054 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2389073;chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054 chrX_2387584_2387709;chrX_2388437_2388670;chrX_2389074_2389271;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2392055_2392148 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA 66.67 NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA K alternative_acceptor Bsg25D chr2L - chr2L_5273555_5274018 chr2L_5273591_5274018 chr2L_5274019_5275763;chr2L_5273161_5273554 85.71 NA NA 88.89 NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA 91.67 NA NA 87.50 80.00 NA NA 66.67 NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA 85.71 NA 77.78 NA NA NA NA NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2392054 chrX_2387249_2388436;chrX_2388671_2389073;chrX_2389272_2389644;chrX_2389762_2392054 chrX_2388437_2388670;chrX_2389074_2389271;chrX_2389645_2389761 chrX_2387149_2387248;chrX_2392055_2392148 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA 66.67 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA K jcn_only_AD lok,I_chr2L_20063155_20063377,RI_chr2L_20063248_20063377 chr2L + chr2L_20063172_20063377 chr2L_20063248_20063377 chr2L_20063378_20063477;chr2L_20063148_20063171 1.85 5.43 3.64 9.68 1.75 3.85 0.00 0.00 1.65 1.61 9.09 0.89 1.59 3.17 3.45 1.59 1.96 2.44 1.33 4.05 1.85 0.00 1.98 2.90 0.00 1.64 1.11 3.23 5.00 2.70 2.74 1.08 0.00 4.44 1.96 1.18 0.98 2.50 1.90 1.41 1.01 1.71 2.08 2.94 1.18 0.75 2.00 0.64 3.67 4.00 2.17 0.00 2.13 0.00 1.41 1.47 1.85 1.64 K multi_cassette cno,I_chr3R_999718_999986,I_chr3R_999737_999777,RI_chr3R_1009937_1010000 chr3R - chr3R_1008608_1011090 chr3R_1008608_1009498;chr3R_1009706_1010000;chr3R_1010246_1010308;chr3R_1010364_1011090 chr3R_1009499_1009705;chr3R_1010001_1010245;chr3R_1010309_1010363 chr3R_1008441_1008607;chr3R_1011091_1011212 100.00 100.00 100.00 96.88 100.00 100.00 100.00 97.22 98.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 98.04 100.00 96.43 95.24 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.63 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 K intron_retention CG17646,E_chr2L_1749256_1749517 chr2L + chr2L_1742261_1743344 chr2L_1742260_1742261;chr2L_1743344_1743345 chr2L_1742246_1742260;chr2L_1743345_1743527 3.12 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Ras85D,I_chr3R_5338160_5338509,EI_chr3R_5338175_5338279,I_chr3R_5338175_5338299 chr3R - chr3R_5338175_5338279 chr3R_5338174_5338175;chr3R_5338279_5338280 chr3R_5338075_5338174;chr3R_5338280_5338337 47.06 NA NA NA NA NA NA 50.00 40.00 NA NA NA NA NA NA 50.00 NA NA NA 22.22 NA 47.06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 31.58 NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD kay,E_chr3R_25616137_25617114 chr3R + chr3R_25615618_25617114;chr3R_25616533_25617114 chr3R_25616577_25617114 chr3R_25617115_25617214;chr3R_25615520_25615617 96.67 89.58 94.64 100.00 92.31 97.56 95.52 79.69 97.37 100.00 92.86 98.20 83.58 97.22 95.45 100.00 97.56 NA 86.11 98.20 96.67 90.91 100.00 93.88 97.96 95.00 97.87 97.56 95.77 100.00 93.55 NA 100.00 100.00 NA 98.90 100.00 100.00 100.00 96.30 NA 92.41 95.35 93.33 100.00 92.59 98.11 92.11 96.83 98.00 93.18 94.12 100.00 96.43 93.33 100.00 94.34 95.00 K intron_retention CG32685,CREI_chrX_9967445_9972518 chrX - chrX_9971402_9972518 chrX_9971401_9971402;chrX_9972518_9972519 chrX_9971342_9971401;chrX_9972519_9972618 25.00 NA NA 27.78 NA NA 78.57 25.00 19.05 NA NA 26.32 NA 25.00 20.00 NA NA NA 35.71 28.57 NA NA 35.71 NA NA 14.29 NA 36.36 NA 40.00 NA 12.50 0.00 27.27 NA NA NA NA 25.00 7.41 30.00 19.23 NA NA 0.00 4.00 NA 0.00 16.00 NA NA NA NA NA NA NA NA 8.33 K alternative_donor twin,RI_chr3R_20032242_20045321 chr3R - chr3R_20046286_20047530;chr3R_20046286_20047526 chr3R_20046286_20047514 chr3R_20046254_20046285;chr3R_20047531_20047647 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA 90.91 NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA NA NA NA 100.00 K intron_retention Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19564871_19564927 chr2R_19564870_19564871;chr2R_19564927_19564928 chr2R_19564772_19564870;chr2R_19564928_19565176 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG11030,I_chr2L_5725229_5757516,EI_chr2L_5725229_5802177 chr2L + chr2L_5725229_5758694 chr2L_5725229_5741469;chr2L_5741524_5758694 chr2L_5741470_5741523 chr2L_5725129_5725228;chr2L_5758695_5759362 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.88 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive babo chr2R + chr2R_4842357_4842463,chr2R_4842673_4846611;chr2R_4842357_4843217,chr2R_4843364_4846611 chr2R_4842357_4844533,chr2R_4844662_4846611 chr2R_4842464_4842672;chr2R_4843218_4843363 chr2R_4844534_4844661 chr2R_4842239_4842356;chr2R_4846612_4846839 42.48 27.27 55.00 37.50 30.00 54.55 63.41 46.15 42.86 33.33 28.57 46.88 25.00 41.18 42.86 37.50 73.33 45.45 50.00 30.77 40.00 71.43 42.86 42.86 53.33 46.67 39.13 NA 40.00 42.86 37.50 40.00 45.45 30.30 35.71 25.00 31.82 47.06 36.36 63.64 NA 37.14 46.67 39.13 83.33 50.00 37.50 33.33 42.86 50.00 39.13 33.33 57.14 NA 42.11 50.00 87.50 25.00 K jcn_only_AD CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_239517_240516;chr4_239517_239863 chr4_239517_240531 chr4_239079_239516;chr4_240532_240654 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 1.11 0.90 0.00 0.00 0.00 0.00 2.08 0.00 0.00 1.67 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG15771,F_chrX_5650884_5651894 chrX + chrX_5652381_5652437 chrX_5652380_5652381;chrX_5652437_5652438 chrX_5651895_5652380;chrX_5652438_5653784 0.00 0.00 0.00 0.00 1.15 1.39 0.00 0.00 0.44 0.00 0.00 0.73 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7458 chr3L + chr3L_21948331_21948413 chr3L_21948330_21948331;chr3L_21948413_21948414 chr3L_21948244_21948330;chr3L_21948414_21948649 100.00 NA NA NA NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA 100.00 NA 100.00 NA NA 91.67 90.91 NA NA 100.00 NA NA NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 88.89 93.33 NA 100.00 NA 100.00 91.67 100.00 100.00 K cassette RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19801785_19802174 chr3L_19801785_19801843;chr3L_19802108_19802174 chr3L_19801844_19802107 chr3L_19801300_19801784;chr3L_19802175_19802674 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.27 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 97.56 100.00 99.03 100.00 98.84 98.80 100.00 100.00 100.00 100.00 100.00 95.45 98.04 100.00 100.00 100.00 100.00 100.00 100.00 98.94 100.00 100.00 100.00 100.00 98.84 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 98.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Pcd,RI_chr3R_25549090_25549159 chr3R + chr3R_25549079_25549159 chr3R_25549078_25549079;chr3R_25549159_25549160 chr3R_25548990_25549078;chr3R_25549160_25549259 2.15 1.52 0.00 5.41 2.56 0.00 3.28 0.00 2.15 0.00 0.00 2.90 0.00 0.00 5.77 2.27 0.00 2.86 2.86 0.00 3.57 0.00 2.78 2.74 0.00 5.26 7.89 4.55 0.00 2.17 2.33 0.00 1.85 3.39 5.56 0.00 1.32 0.00 1.59 0.00 0.00 4.94 0.00 1.72 3.57 0.00 0.00 2.94 5.06 2.44 2.56 0.00 0.00 2.94 0.00 2.70 2.27 2.94 K intron_retention RpS14a,I_chrX_7827880_7828041,F_chrX_7841357_7841447 chrX + chrX_7827808_7828041 chrX_7827807_7827808;chrX_7828041_7828042 chrX_7827780_7827807;chrX_7828042_7828141 0.29 0.36 0.06 0.12 0.20 0.07 0.45 0.10 0.21 0.27 0.18 0.18 0.08 0.24 0.09 0.29 0.20 0.09 0.09 0.10 0.07 0.47 2.13 0.67 0.82 0.13 4.67 2.64 2.20 0.99 0.29 0.51 0.30 0.12 0.75 3.20 0.29 1.96 0.75 0.78 0.16 0.10 0.08 0.90 0.06 0.63 0.90 0.44 0.27 1.53 4.04 0.55 0.27 3.57 0.11 0.54 0.68 0.18 K intron_retention CG5147 chr3L - chr3L_18101628_18101679 chr3L_18101627_18101628;chr3L_18101679_18101680 chr3L_18100845_18101627;chr3L_18101680_18101748 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 1.92 0.00 0.00 1.82 0.00 K alternative_acceptor prel chr2R + chr2R_5311772_5311836 chr2R_5311772_5311833 chr2R_5311616_5311771;chr2R_5311837_5311930 38.89 40.91 37.50 45.35 32.35 36.76 37.97 39.81 37.50 42.22 40.48 38.52 43.75 35.38 40.48 40.62 47.37 36.92 37.68 40.28 37.93 38.89 38.89 37.35 45.95 47.54 43.33 38.98 40.28 36.36 40.00 37.63 35.42 34.74 49.18 51.72 40.98 38.71 40.00 38.57 43.84 42.06 42.59 34.25 35.05 36.67 36.36 36.43 38.84 39.66 38.20 39.13 42.11 36.92 32.93 40.85 35.71 36.48 K intron_retention CG7530,eff chr3R - chr3R_10551112_10551178 chr3R_10551111_10551112;chr3R_10551178_10551179 chr3R_10550514_10551111;chr3R_10551179_10551652 0.00 0.00 0.00 1.18 0.00 0.00 1.32 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 4.04 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 1.11 1.73 3.70 1.04 0.00 1.43 0.00 0.72 0.00 0.83 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 K intron_retention penguin chrX - chrX_21218460_21218557 chrX_21218459_21218460;chrX_21218557_21218558 chrX_21217984_21218459;chrX_21218558_21218960 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 K alternative_donor eIF-1A,I_chr3R_14106104_14107415,I_chr3R_14106955_14107415 chr3R + chr3R_14106104_14107415;chr3R_14100864_14107415 chr3R_14106955_14107415 chr3R_14107416_14107515;chr3R_14100759_14100863 0.00 0.00 0.22 0.28 0.00 0.00 0.16 0.11 0.11 0.00 0.25 0.12 0.23 0.00 0.00 0.18 0.00 0.00 0.00 0.11 0.00 0.00 0.23 0.00 0.00 0.00 0.22 0.37 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CycG,I_chr3R_27427946_27436602,I_chr3R_27427953_27429034,I_chr3R_27427953_27431334,RE_chr3R_27427953_27436598 chr3R - chr3R_27427953_27429034 chr3R_27427952_27427953;chr3R_27429034_27429035 chr3R_27427853_27427952;chr3R_27429035_27429096 97.75 100.00 97.73 98.08 95.00 100.00 96.88 98.75 98.18 95.24 100.00 98.73 97.73 95.24 97.87 98.33 97.37 96.88 98.00 95.60 96.30 97.96 97.96 96.15 97.06 100.00 100.00 100.00 100.00 97.14 97.78 88.89 100.00 98.59 96.77 100.00 95.45 96.67 96.55 98.25 92.86 98.63 96.67 97.44 NA 95.83 94.12 91.30 95.06 95.45 97.87 100.00 100.00 100.00 98.04 95.45 96.55 100.00 K jcn_only_AA CG42258,I_chrX_12359522_12362282 chrX + chrX_12370302_12370369 chrX_12370302_12370351 chrX_12370186_12370301;chrX_12370370_12370989 1.64 2.17 3.85 0.00 3.45 0.00 1.75 0.00 1.94 4.17 0.00 4.84 0.00 NA 6.67 0.00 0.00 0.00 5.71 2.91 0.00 2.50 3.03 1.64 0.00 10.00 0.00 0.00 0.00 1.54 NA 2.78 1.79 0.00 0.00 2.78 0.00 1.41 0.00 1.77 2.70 1.14 4.76 4.11 3.64 0.00 0.00 2.86 3.12 2.38 0.00 0.00 1.67 0.00 0.00 1.64 0.00 2.35 N jcn_only_AA CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261460_263113;chr4_261460_261555 chr4_261460_263086 chr4_261360_261459;chr4_263114_263305 87.69 NA NA 33.33 NA NA 90.48 95.12 87.69 NA NA 83.87 NA 100.00 NA 74.36 NA NA 88.89 90.48 NA NA NA NA NA NA NA NA NA NA 72.00 NA NA 87.88 NA NA NA NA NA 90.91 NA 82.93 NA NA NA NA NA NA 81.58 NA NA NA NA NA 70.83 NA NA NA K intron_retention Shawn_Tyler,MKP-4 chrX + chrX_19517582_19517647 chrX_19517581_19517582;chrX_19517647_19517648 chrX_19517450_19517581;chrX_19517648_19517747 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention SmD3,Cct5 chr2R + chr2R_8056701_8057229 chr2R_8056700_8056701;chr2R_8057229_8057230 chr2R_8056162_8056700;chr2R_8057230_8058070 0.51 0.00 2.44 2.88 1.28 0.00 0.00 1.39 1.45 0.00 0.00 2.99 5.66 0.00 0.00 4.44 0.00 2.50 0.00 2.76 1.52 1.23 0.00 0.40 0.00 0.00 2.70 2.10 1.89 0.00 0.00 0.00 0.91 2.38 0.00 1.27 1.18 0.00 0.44 1.29 0.51 4.00 1.61 1.27 0.30 0.00 0.89 0.00 1.64 1.13 0.00 0.00 0.55 0.98 0.00 0.00 0.00 0.00 K intron_retention Droj2,RI_chr3R_9207981_9208471,RI_chr3R_9208529_9209185 chr3R + chr3R_9207981_9209185 chr3R_9207980_9207981;chr3R_9209185_9209186 chr3R_9207926_9207980;chr3R_9209186_9209285 0.00 0.00 0.00 0.77 0.00 0.00 0.47 0.45 0.45 0.00 0.00 0.00 0.00 0.36 0.00 0.36 0.00 0.00 0.83 0.38 0.00 0.28 0.00 0.59 0.00 0.39 1.02 1.00 0.20 0.00 0.00 0.20 0.00 0.41 0.00 0.18 0.29 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.21 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3308,I_chr3R_17099005_17099062 chr3R - chr3R_17097816_17097876 chr3R_17097815_17097816;chr3R_17097876_17097877 chr3R_17096800_17097815;chr3R_17097877_17098158 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 K alternative_donor spt4,I_chr2R_8521473_8521540 chr2R + chr2R_8521473_8521540 chr2R_8521475_8521540 chr2R_8521541_8521640;chr2R_8521373_8521472 98.39 97.83 97.62 98.41 100.00 100.00 100.00 98.11 96.55 100.00 100.00 97.10 96.88 100.00 97.44 100.00 100.00 100.00 100.00 98.02 100.00 100.00 97.87 97.87 97.37 98.00 97.83 100.00 96.00 96.97 100.00 100.00 100.00 98.18 96.55 96.97 100.00 97.06 100.00 100.00 97.22 98.41 100.00 96.67 100.00 98.36 96.08 95.83 98.39 100.00 100.00 100.00 97.67 98.31 100.00 98.36 98.31 100.00 K intron_retention CG3328,I_chr2R_20051089_20053935 chr2R + chr2R_20060779_20060838 chr2R_20060778_20060779;chr2R_20060838_20060839 chr2R_20060559_20060778;chr2R_20060839_20061098 21.54 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.08 NA 41.67 NA NA NA NA NA NA NA NA NA NA 20.00 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Myb,RI_chrX_15752571_15753225 chrX - chrX_15751579_15751682 chrX_15751578_15751579;chrX_15751682_15751683 chrX_15749823_15751578;chrX_15751683_15751694 87.87 93.75 90.91 94.00 92.86 91.67 86.11 91.53 87.23 NA 73.33 89.80 88.24 81.48 95.00 86.00 85.00 95.24 97.30 87.50 71.43 91.67 81.82 92.86 90.00 95.45 88.89 90.00 94.74 66.67 80.65 57.14 64.29 89.58 83.33 100.00 64.29 91.67 91.67 86.67 86.67 84.44 84.62 90.91 73.33 77.78 NA 76.67 92.16 91.67 86.67 75.00 88.89 66.67 91.67 85.71 NA 81.82 K cassette CG3884 chr2R - chr2R_8838855_8839677 chr2R_8838855_8839350;chr2R_8839384_8839677 chr2R_8839351_8839383 chr2R_8837909_8838854;chr2R_8839678_8839836 12.37 10.00 14.68 12.75 10.75 14.81 6.38 12.78 10.05 14.29 14.46 18.38 9.72 16.47 16.28 14.79 12.22 13.51 10.98 13.22 19.28 4.05 9.63 14.68 12.31 7.46 11.19 9.30 10.26 11.11 13.79 19.75 21.88 10.45 8.86 9.09 13.33 14.74 14.29 9.15 11.43 13.47 12.20 9.29 21.52 12.12 13.59 21.92 12.37 8.89 11.59 17.65 8.82 9.28 12.73 14.02 10.50 22.22 K intron_retention CG31431 chr3R + chr3R_17697863_17698131 chr3R_17697862_17697863;chr3R_17698131_17698132 chr3R_17697704_17697862;chr3R_17698132_17698247 6.19 6.19 5.71 4.63 4.12 4.50 30.98 6.40 5.41 8.33 6.67 5.86 16.41 7.48 5.77 2.68 5.26 6.72 6.90 5.39 4.58 7.14 6.49 4.35 8.25 6.90 7.60 10.71 5.97 4.84 6.12 8.77 6.15 6.30 5.77 5.26 5.36 6.98 5.71 11.11 18.63 6.23 7.46 3.29 7.14 7.84 7.05 11.28 6.50 5.15 4.93 7.32 3.49 5.66 5.20 4.88 3.85 7.55 K alternative_donor oaf chr2L + chr2L_2495889_2496398 chr2L_2495927_2496398 chr2L_2496399_2497357;chr2L_2495570_2495888 0.00 0.00 5.88 0.00 NA NA NA 6.25 0.00 0.00 0.00 6.90 NA NA 6.25 NA NA 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 22.73 0.00 NA NA 0.00 5.26 NA 0.00 0.00 3.45 0.00 0.00 NA 4.17 NA 0.00 0.00 0.00 0.00 0.00 6.90 NA 0.00 NA NA 0.00 0.00 NA NA 0.00 K cassette I_chr3L_1494947_1496080,pUf68,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1500389_1501798;chr3L_1499338_1501798 chr3L_1500389_1501345,chr3L_1499338_1501345;chr3L_1501398_1501798 chr3L_1501346_1501397 chr3L_1499043_1499337;chr3L_1501799_1501892 4.35 2.90 3.85 0.00 3.92 3.51 0.00 2.90 3.26 4.88 17.24 7.53 17.14 5.56 6.49 2.90 3.77 4.35 2.70 8.70 14.29 1.96 6.90 5.08 5.26 0.00 8.33 4.26 4.35 6.82 10.59 3.92 10.26 2.11 5.88 2.70 4.69 3.57 6.25 5.94 4.76 3.81 3.92 11.11 1.82 7.14 4.08 5.38 3.85 5.97 9.09 4.08 2.27 5.88 4.48 5.56 0.00 4.23 K intron_retention CG5548 chrX + chrX_14958017_14958081 chrX_14958016_14958017;chrX_14958081_14958082 chrX_14957699_14958016;chrX_14958082_14958834 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 2.47 0.41 0.00 0.00 0.59 0.00 0.00 0.99 0.00 1.94 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 1.17 0.00 1.61 1.25 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8026,I_chr2R_5074640_5074701 chr2R - chr2R_5074640_5075624 chr2R_5074639_5074640;chr2R_5075624_5075625 chr2R_5074540_5074639;chr2R_5075625_5075770 44.14 41.75 49.38 46.84 43.28 36.67 56.52 45.35 48.55 31.03 46.30 45.45 50.00 42.86 38.75 47.69 52.73 40.98 45.10 42.03 50.72 75.64 44.68 45.03 44.14 58.82 41.55 57.14 35.64 43.24 43.94 47.95 53.73 46.53 43.90 47.83 37.14 35.67 35.94 44.53 54.84 39.86 47.83 36.00 51.04 39.86 41.79 52.54 42.22 43.08 38.07 39.51 43.26 39.86 34.88 35.94 45.39 63.64 K alternative_donor Nc73EF,I_chr3L_16950628_16951334,I_chr3L_16950952_16952198,I_chr3L_16951588_16952198,I_chr3L_16951626_16952198,I_chr3L_16952138_16952198,I_chr3L_16952985_16955434,I_chr3L_16953768_16954599 chr3L + chr3L_16950606_16952198;chr3L_16950615_16952198 chr3L_16950628_16952198 chr3L_16952199_16952207;chr3L_16950580_16950605 73.87 57.14 60.00 78.57 71.43 50.00 80.00 72.22 81.48 71.43 60.00 61.11 87.50 71.43 70.00 70.00 57.14 80.00 83.33 75.00 75.00 80.00 55.56 78.57 75.00 100.00 75.00 80.00 100.00 NA 75.00 NA NA 68.18 77.78 100.00 80.00 71.43 71.43 72.73 NA 61.90 57.14 85.71 85.71 71.43 50.00 NA 68.18 56.25 78.95 71.43 NA 80.00 75.00 63.64 83.33 NA K intron_retention CG9170 chrX - chrX_15875706_15875771 chrX_15875705_15875706;chrX_15875771_15875772 chrX_15872214_15875705;chrX_15875772_15875883 0.00 0.00 0.00 22.73 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 NA NA 14.29 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K jcn_only_AA RI_chr4_683177_684480,Slip1,RI_chr4_684369_684451,RI_chr4_684967_689045,I_chr4_685717_686576,RI_chr4_685717_689045,RI_chr4_687548_689045 chr4 + chr4_684369_684480 chr4_684369_684451 chr4_684313_684368;chr4_684481_684551 3.23 2.78 0.00 7.02 0.00 NA 0.00 6.15 2.40 NA 5.00 6.38 4.35 0.00 0.00 6.25 4.17 NA 7.50 0.00 0.00 0.00 0.00 3.85 NA 9.52 0.00 4.17 4.76 0.00 3.45 NA 3.85 2.90 0.00 NA 0.00 NA 4.55 4.55 NA 3.77 3.23 2.38 NA 4.55 NA 0.00 3.57 NA 0.00 0.00 NA NA 2.70 9.09 4.55 NA K intron_retention CG6623,I_chr3R_11040813_11040964,I_chr3R_11042070_11042139 chr3R - chr3R_11040813_11041060 chr3R_11040812_11040813;chr3R_11041060_11041061 chr3R_11040713_11040812;chr3R_11041061_11041064 5.00 0.00 0.00 NA NA NA 0.00 14.29 5.26 NA NA 7.41 NA NA 0.00 15.79 NA NA 14.29 8.33 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA 10.53 NA NA 0.00 0.00 5.00 5.88 NA 0.00 14.29 5.88 NA 0.00 8.70 NA 13.04 0.00 6.25 0.00 0.00 9.09 NA 10.00 7.69 7.69 K alternative_donor Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629585_2629921 chr3L_2629585_2629913 chr3L_2629141_2629584;chr3L_2629922_2630021 98.04 95.65 96.97 98.04 100.00 94.44 94.44 98.25 96.61 100.00 100.00 96.00 94.37 98.04 100.00 99.26 100.00 100.00 97.83 98.06 96.55 NA 100.00 100.00 84.62 97.73 95.00 NA 96.30 100.00 97.30 100.00 100.00 100.00 94.44 100.00 100.00 90.91 100.00 97.67 100.00 98.39 96.88 94.12 93.33 97.73 92.31 98.23 97.85 90.00 100.00 100.00 100.00 88.89 96.55 96.00 100.00 100.00 K jcn_only_AA ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13413922_13414718;chr2R_13413823_13414718;chr2R_13414486_13414718;chr2R_13413919_13414718 chr2R_13414489_13414718 chr2R_13414719_13414817 0.00 0.00 0.92 0.51 0.00 0.00 0.00 0.00 0.37 2.38 0.00 0.00 0.00 1.63 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.99 0.66 0.00 0.00 1.06 1.05 0.00 0.38 1.34 0.00 0.00 0.29 0.61 0.00 0.62 0.50 0.85 0.00 0.00 1.07 0.46 4.11 0.63 1.24 1.14 1.54 0.86 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette klar,I_chr3L_462559_472609,RI_chr3L_517594_539898 chr3L - chr3L_445568_449996 chr3L_445568_445731;chr3L_445912_449996 chr3L_445732_445911 chr3L_444601_445567;chr3L_449997_450170 100.00 100.00 100.00 100.00 99.00 100.00 99.29 100.00 99.61 100.00 99.11 100.00 99.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.01 97.99 100.00 99.46 99.16 99.10 99.30 98.80 98.39 100.00 100.00 100.00 98.82 99.43 99.07 99.24 99.18 100.00 97.89 100.00 100.00 100.00 100.00 100.00 98.95 100.00 100.00 99.38 99.51 100.00 99.51 100.00 100.00 100.00 99.32 100.00 100.00 100.00 K multi_cassette zip,I_chr2R_20878796_20879147 chr2R - chr2R_20884825_20887561 chr2R_20884825_20885100;chr2R_20885221_20885800;chr2R_20885825_20887561 chr2R_20885101_20885220;chr2R_20885801_20885824 chr2R_20884732_20884824;chr2R_20887562_20887683 86.67 100.00 82.35 87.50 83.33 68.18 84.00 80.00 88.89 100.00 82.35 97.06 94.12 100.00 83.33 80.95 94.12 83.33 92.31 96.55 70.59 80.00 85.71 96.30 86.67 91.67 86.67 61.54 46.88 89.29 82.35 63.64 84.38 80.00 94.74 84.21 92.86 82.14 95.83 81.82 83.33 94.29 85.00 95.00 58.33 81.25 81.25 94.44 96.77 66.67 92.11 83.33 91.67 100.00 95.00 91.67 94.12 100.00 K intron_retention pgant5,I_chr2L_5079575_5093241 chr2L - chr2L_5092899_5093444 chr2L_5092898_5092899;chr2L_5093444_5093445 chr2L_5092875_5092898;chr2L_5093445_5093575 25.00 NA NA 46.15 NA NA 40.00 36.84 21.05 NA NA NA NA 20.00 NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA 21.43 NA NA NA NA NA NA NA NA NA K alternative_acceptor foi,I_chr3L_8524905_8524976 chr3L + chr3L_8524905_8524976 chr3L_8524905_8524966 chr3L_8524805_8524904;chr3L_8524977_8525076 97.30 99.00 96.58 97.41 97.33 98.72 94.96 96.80 97.91 98.63 98.06 97.48 98.28 97.44 98.10 98.89 98.81 96.97 97.40 97.86 97.87 96.77 97.93 94.53 96.03 93.94 95.38 96.69 95.60 97.80 95.87 95.92 95.45 99.17 97.06 98.26 97.60 97.14 97.30 95.83 95.45 97.78 98.72 97.37 92.00 98.06 96.88 92.98 97.53 95.28 94.90 97.10 98.55 96.55 97.03 98.00 95.83 95.12 K alternative_donor CG10550 chr3R - chr3R_21133632_21134032;chr3R_21133632_21134036 chr3R_21133632_21133902 chr3R_21133411_21133631;chr3R_21134037_21134116 0.00 NA NA 8.33 NA NA 10.00 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA K alternative_donor vlc chr2R + chr2R_1589953_1590371;chr2R_1589894_1590371;chr2R_1589799_1590371;chr2R_1590318_1590371;chr2R_1589807_1590371;chr2R_1590294_1590371;chr2R_1589722_1590371;chr2R_1589693_1590371 chr2R_1589805_1590371 chr2R_1590372_1590451;chr2R_1589612_1589692 1.82 2.94 2.56 1.52 4.35 0.00 1.82 1.52 5.06 0.00 0.00 1.33 2.44 2.33 2.86 4.29 3.23 2.50 2.08 2.94 3.70 5.88 0.00 2.86 4.55 0.00 0.00 7.69 0.00 4.17 2.17 8.33 4.35 1.27 0.00 4.17 0.00 0.00 0.00 0.00 0.00 4.05 2.63 0.00 0.00 0.00 0.00 0.00 2.44 0.00 6.25 0.00 0.00 0.00 1.85 0.00 3.70 0.00 K intron_retention CG9135,I_chr2L_6050922_6051505 chr2L + chr2L_6050922_6051616 chr2L_6050921_6050922;chr2L_6051616_6051617 chr2L_6050822_6050921;chr2L_6051617_6052022 0.00 NA NA 2.94 0.00 0.00 8.70 0.00 0.00 0.00 NA 5.26 0.00 NA 0.00 0.00 NA 0.00 0.00 3.12 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA NA 7.14 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA 4.17 NA NA NA K intron_retention rho-4,CG1703 chrX + chrX_11499112_11499170 chrX_11499111_11499112;chrX_11499170_11499171 chrX_11498769_11499111;chrX_11499171_11499252 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.76 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG8632,CG8646 chr2R + chr2R_8540633_8540691 chr2R_8540633_8540686 chr2R_8540334_8540632;chr2R_8540692_8541563 93.33 90.91 90.00 89.47 NA 100.00 100.00 93.33 95.00 NA NA 94.74 NA 100.00 90.91 100.00 NA 78.57 88.89 91.30 100.00 90.91 92.86 93.33 90.00 93.33 93.75 NA 100.00 92.86 90.91 100.00 90.00 92.86 NA 100.00 91.67 93.33 80.00 96.67 100.00 100.00 100.00 100.00 100.00 94.44 90.91 95.45 95.00 87.50 100.00 100.00 87.50 100.00 91.67 100.00 NA 90.00 K cassette CG2182 chr3R - chr3R_1482294_1482520 chr3R_1482294_1482354;chr3R_1482433_1482520 chr3R_1482355_1482432 chr3R_1481952_1482293;chr3R_1482521_1483654 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.48 1.35 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.40 0.00 2.68 0.00 0.00 0.84 0.00 0.55 0.57 0.00 0.74 0.00 0.00 0.87 0.00 1.22 0.00 0.36 0.50 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.63 0.42 0.00 0.00 0.49 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 K alternative_donor sec23,I_chr3R_1474873_1475080,I_chr3R_1474899_1475080,I_chr3R_1474960_1475051,I_chr3R_1477727_1478102 chr3R + chr3R_1474873_1475080;chr3R_1474899_1475080 chr3R_1474960_1475080 chr3R_1475081_1475151;chr3R_1474860_1474872 100.00 96.67 97.44 100.00 100.00 100.00 98.44 98.67 98.84 93.75 100.00 98.67 100.00 97.30 100.00 98.73 94.59 100.00 100.00 98.11 100.00 100.00 100.00 97.56 95.83 97.37 100.00 96.77 100.00 100.00 97.56 100.00 100.00 98.55 100.00 96.00 100.00 100.00 100.00 97.37 100.00 96.15 97.37 100.00 92.31 95.83 100.00 100.00 100.00 100.00 97.73 100.00 100.00 93.75 95.65 100.00 100.00 100.00 K jcn_only_AD sdk,I_chrX_581050_581605,I_chrX_581108_581660,I_chrX_625220_634459,I_chrX_636395_636562 chrX + chrX_581160_581605;chrX_581043_581605;chrX_580974_581605 chrX_581108_581605 chrX_581606_581705;chrX_580950_580973 91.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 91.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention app,RI_chr3L_12201038_12201989,I_chr3L_12259361_12259754 chr3L - chr3L_12201038_12205752 chr3L_12201037_12201038;chr3L_12205752_12205753 chr3L_12200938_12201037;chr3L_12205753_12205867 2.08 0.00 4.35 0.00 0.00 7.14 3.85 0.00 0.00 0.00 12.50 5.66 0.00 0.00 0.00 8.70 0.00 0.00 0.00 3.28 7.41 5.88 3.17 2.04 0.00 6.25 6.67 9.52 7.14 6.67 0.00 0.00 4.55 2.56 0.00 14.29 2.90 0.00 5.00 8.11 0.00 2.13 0.00 3.23 0.00 8.00 0.00 11.11 5.77 0.00 4.35 0.00 0.00 10.53 0.00 NA 0.00 0.00 N alternative_donor Not1,I_chr2R_5463624_5463682 chr2R - chr2R_5455592_5455673;chr2R_5455592_5456522 chr2R_5455592_5456067 chr2R_5455002_5455591;chr2R_5456523_5457661 97.76 98.51 97.73 95.83 98.05 97.16 96.84 97.48 98.05 92.98 97.39 97.16 93.41 97.09 97.89 98.03 98.17 96.67 96.72 96.07 97.33 96.42 98.73 98.50 98.29 98.15 95.41 95.38 97.96 98.46 97.11 98.21 93.70 97.78 97.58 98.42 99.10 98.90 98.97 98.27 97.32 98.41 97.28 98.43 96.75 97.75 97.99 97.22 97.73 97.86 97.76 97.99 99.22 97.35 97.22 97.91 98.95 98.35 K jcn_only_AA Dph5,RI_chr3R_18408634_18408707,CG33107 chr3R - chr3R_18408634_18408707 chr3R_18408638_18408707 chr3R_18408708_18408807;chr3R_18408534_18408633 100.00 99.59 100.00 100.00 100.00 100.00 99.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.55 99.58 100.00 100.00 100.00 98.94 99.68 100.00 99.44 99.39 99.74 100.00 100.00 99.63 100.00 100.00 98.82 100.00 100.00 100.00 99.60 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.62 100.00 100.00 K intron_retention l(1)G0196,I_chrX_21890195_21895316,I_chrX_21900456_21904601 chrX + chrX_21894258_21895316 chrX_21894257_21894258;chrX_21895316_21895317 chrX_21894114_21894257;chrX_21895317_21895416 5.04 6.17 5.83 6.75 2.17 5.61 7.56 7.61 4.85 3.03 9.59 7.26 10.14 4.08 5.04 5.39 4.76 4.39 9.09 4.28 7.53 4.12 4.60 8.62 1.54 4.88 5.63 3.57 4.00 3.09 6.25 6.78 4.43 6.82 2.90 3.45 4.21 6.25 4.40 1.38 6.02 4.48 5.56 2.65 7.69 6.73 5.26 0.39 3.85 4.76 3.28 6.25 7.41 12.00 3.10 13.16 5.41 4.76 K alternative_donor CG9674,I_chr3L_16793055_16793171,I_chr3L_16793055_16793190,I_chr3L_16793055_16800660 chr3L - chr3L_16793055_16793196;chr3L_16793055_16793173 chr3L_16793055_16793200 chr3L_16792955_16793054;chr3L_16793201_16793268 100.00 NA NA 100.00 NA NA 96.30 95.45 94.12 NA 100.00 NA NA NA NA 100.00 NA NA 100.00 95.65 NA 96.77 100.00 NA NA NA 72.73 100.00 100.00 NA 95.45 NA 100.00 100.00 100.00 NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA N multi_cassette CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525393_1529105 chr3L_1525393_1525641;chr3L_1525704_1527189;chr3L_1527382_1527438;chr3L_1527614_1527673;chr3L_1528077_1529105 chr3L_1525642_1525703;chr3L_1527190_1527381;chr3L_1527439_1527613;chr3L_1527674_1528076 chr3L_1525293_1525392;chr3L_1529106_1529206 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 42.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG17233,I_chr3L_20232803_20232962,RI_chr3L_20232898_20232962 chr3L - chr3L_20232648_20232962;chr3L_20232714_20232962;chr3L_20232711_20232962 chr3L_20232645_20232962 chr3L_20232963_20233016;chr3L_20232147_20232644 0.00 0.00 0.00 0.00 4.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 4.76 4.76 0.00 0.00 0.00 4.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 2.63 0.00 NA 2.27 2.33 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.56 0.00 0.00 NA 3.70 5.26 0.00 0.00 K intron_retention mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818597_7818853 chr3R_7818596_7818597;chr3R_7818853_7818854 chr3R_7818507_7818596;chr3R_7818854_7818892 93.75 90.62 85.29 82.93 91.30 96.55 97.83 92.77 96.55 93.33 94.12 92.11 94.83 85.37 98.00 94.55 92.86 96.55 92.16 95.79 90.70 91.67 96.55 95.65 95.45 87.88 91.84 92.59 94.74 93.75 96.97 94.74 90.00 92.77 95.65 95.00 100.00 100.00 96.00 88.89 94.44 96.30 91.49 86.67 84.21 91.43 95.24 100.00 92.55 100.00 93.02 95.65 91.67 92.31 88.24 95.83 100.00 85.71 K intron_retention CG17370,RI_chr3R_21707998_21710705,RI_chr3R_21714780_21715376 chr3R + chr3R_21711552_21711616 chr3R_21711551_21711552;chr3R_21711616_21711617 chr3R_21711104_21711551;chr3R_21711617_21711742 0.00 0.00 2.86 4.17 0.00 0.00 0.00 6.52 4.17 0.00 0.00 3.92 0.00 7.69 0.00 4.44 6.06 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 14.29 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 5.88 N jcn_only_AD CG9940 chrX - chrX_13601748_13612161 chrX_13601748_13603401 chrX_13601629_13601747;chrX_13612162_13612298 0.00 0.00 0.00 0.00 27.59 0.00 0.00 12.90 0.00 0.00 0.00 20.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.38 0.00 0.00 0.00 10.26 0.00 0.00 NA 0.00 0.00 0.00 0.00 6.02 20.93 NA 0.00 0.00 37.14 0.00 0.00 0.00 0.00 10.58 K intron_retention X11L,RE_chrX_17497873_17498103 chrX + chrX_17497127_17497188 chrX_17497126_17497127;chrX_17497188_17497189 chrX_17496185_17497126;chrX_17497189_17497504 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Adk2,I_chr2R_19912891_19912937 chr2R + chr2R_19912891_19912954 chr2R_19912890_19912891;chr2R_19912954_19912955 chr2R_19912791_19912890;chr2R_19912955_19913037 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.49 0.00 0.97 0.36 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 1.37 2.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.68 0.82 0.00 0.00 0.58 0.81 0.31 0.00 0.22 0.59 0.00 0.00 0.00 0.51 0.44 0.00 0.17 0.00 K intron_retention unc-13,I_chr4_904268_904671,CRE_chr4_904268_906381,I_chr4_904268_919018,I_chr4_904747_906385,REI_chr4_906314_906385,I_chr4_906518_906708,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_904268_919018 chr4_904267_904268;chr4_919018_919019 chr4_904196_904267;chr4_919019_919102 7.69 NA NA 26.32 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA 60.00 NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG6448,I_chr2L_22146997_22156620 chr2L + chr2L_22146997_22156620 chr2L_22146997_22154797;chr2L_22155409_22156620 chr2L_22154798_22155408 chr2L_22146897_22146996;chr2L_22156621_22156720 99.01 100.00 99.24 87.13 99.07 98.20 97.35 97.52 98.73 98.92 98.94 99.59 100.00 97.25 98.61 98.52 99.00 98.02 99.14 97.17 98.15 98.34 99.44 98.84 100.00 99.23 98.73 100.00 98.20 97.67 97.86 98.73 99.43 99.48 100.00 98.55 100.00 99.22 99.48 99.18 96.15 98.59 96.97 98.80 99.15 99.39 99.23 99.46 98.39 99.32 100.00 98.97 100.00 99.01 99.35 99.10 99.33 99.33 K intron_retention CG17760 chr2R + chr2R_8514897_8515102 chr2R_8514896_8514897;chr2R_8515102_8515103 chr2R_8514742_8514896;chr2R_8515103_8515231 0.99 0.00 0.81 1.43 2.25 0.00 2.87 0.87 0.76 4.44 0.00 1.56 2.53 0.00 1.52 1.05 0.00 0.00 1.69 1.49 0.00 3.28 0.00 0.99 1.61 2.73 1.82 0.00 3.92 0.00 1.83 4.44 3.12 1.19 3.28 0.00 1.12 0.00 2.56 1.75 0.00 0.78 0.00 0.00 3.39 0.00 2.22 0.00 1.25 2.20 0.98 0.00 0.00 0.00 0.62 0.00 1.75 0.00 K alternative_acceptor Ras85D,I_chr3R_5338160_5338509,EI_chr3R_5338175_5338279,I_chr3R_5338175_5338299 chr3R - chr3R_5338160_5338509 chr3R_5338175_5338509 chr3R_5338510_5338609;chr3R_5338075_5338159 99.24 98.73 100.00 98.93 100.00 98.98 100.00 99.40 99.54 95.31 99.12 99.42 100.00 100.00 99.15 99.31 98.86 99.09 99.08 99.67 99.10 99.35 100.00 98.89 100.00 97.87 98.81 100.00 98.39 99.04 99.28 100.00 98.68 99.35 98.53 98.72 98.46 98.70 100.00 98.04 99.14 99.50 100.00 98.91 99.28 99.24 100.00 99.47 99.49 98.39 98.59 98.33 98.68 100.00 99.24 100.00 98.91 99.52 K mutually_exclusive norpA,I_chrX_4219265_4219380 chrX + chrX_4247647_4248503,chrX_4248584_4251072 chrX_4247647_4247976,chrX_4248057_4251072 chrX_4248504_4248583 chrX_4247977_4248056 chrX_4247500_4247646;chrX_4251073_4251309 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 K alternative_acceptor msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585716_2586402;chr3L_2585733_2586402 chr3L_2585739_2586402 chr3L_2586403_2586502;chr3L_2585639_2585715 95.03 93.18 91.86 98.26 92.86 90.67 95.45 94.70 97.44 100.00 95.24 97.84 96.05 97.59 97.83 95.90 94.74 94.03 96.55 95.00 92.59 94.03 93.51 96.61 100.00 97.47 96.55 88.89 94.20 96.23 96.70 89.29 90.28 96.38 95.08 94.92 92.00 95.65 96.15 95.24 95.56 96.20 91.30 96.97 92.31 98.11 93.10 93.86 95.03 90.48 94.38 93.75 90.00 90.48 96.04 94.59 95.45 91.67 K intron_retention dnc,I_chrX_3150245_3150319,I_chrX_3150351_3152643 chrX + chrX_3226580_3228183 chrX_3226579_3226580;chrX_3228183_3228184 chrX_3226475_3226579;chrX_3228184_3228364 36.36 NA NA NA NA NA 28.57 45.45 38.89 NA NA NA 45.45 NA 38.46 NA NA NA 21.43 53.33 NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA 30.00 NA NA NA NA NA 36.36 NA NA NA K alternative_donor l(2)k05819,I_chr2L_4396173_4396266 chr2L + chr2L_4396128_4396809;chr2L_4396407_4396809 chr2L_4396173_4396809 chr2L_4396810_4396906;chr2L_4396073_4396127 44.83 47.54 48.65 59.80 47.22 46.03 51.89 46.46 41.57 38.89 65.52 30.15 33.33 56.90 57.35 47.52 37.88 61.67 64.52 48.81 53.12 33.96 41.86 50.00 33.90 80.33 55.06 81.25 35.82 44.00 42.03 66.67 29.11 44.95 43.18 53.33 36.17 28.57 39.09 43.18 37.50 42.76 55.56 35.71 44.83 45.00 43.18 35.00 46.49 60.61 39.19 45.28 31.25 35.71 56.98 34.21 29.79 23.81 K intron_retention I_chr2L_6323791_6325172,Gef26,I_chr2L_6330719_6330770 chr2L + chr2L_6330564_6330770 chr2L_6330563_6330564;chr2L_6330770_6330771 chr2L_6330244_6330563;chr2L_6330771_6330832 17.03 15.38 NA NA NA NA NA NA 12.00 NA NA NA NA NA NA NA NA NA NA NA NA 48.48 NA 28.57 NA NA 14.29 NA NA NA NA NA NA NA NA NA 14.29 16.67 16.67 30.00 NA 23.53 NA 21.05 0.00 NA NA NA 15.38 NA NA NA 17.65 NA NA NA 17.39 30.77 K cassette Gpo-1,I_chr2R_11747621_11747699,EI_chr2R_11747445_11747699,I_chr2R_11749758_11750187,I_chr2R_11756325_11756380 chr2R - chr2R_11747445_11747699 chr2R_11747445_11747511;chr2R_11747621_11747699 chr2R_11747512_11747620 chr2R_11747345_11747444;chr2R_11747700_11747768 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 96.00 100.00 100.00 100.00 100.00 97.78 98.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 98.48 100.00 100.00 100.00 98.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Tsp86D chr3R + chr3R_6695308_6695364 chr3R_6695307_6695308;chr3R_6695364_6695365 chr3R_6694420_6695307;chr3R_6695365_6696379 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5205 chr3R + chr3R_11311996_11312049 chr3R_11311995_11311996;chr3R_11312049_11312050 chr3R_11311842_11311995;chr3R_11312050_11313147 11.76 NA NA 26.09 NA NA 9.68 0.00 7.14 12.50 NA 11.76 NA NA 0.00 14.29 NA NA NA 7.69 NA 26.47 10.20 16.00 17.14 NA 21.88 19.40 22.22 16.67 NA NA 5.56 9.52 0.00 19.15 11.43 10.71 6.67 14.29 NA 7.69 NA 11.76 NA NA 17.65 3.85 16.00 NA 14.81 NA NA NA NA NA NA NA K intron_retention CG32809,I_chrX_1576815_1577129,I_chrX_1577031_1577129,CEI_chrX_1579569_1579679,RI_chrX_1585391_1586471,I_chrX_1589508_1589564 chrX - chrX_1569282_1569351 chrX_1569281_1569282;chrX_1569351_1569352 chrX_1569042_1569281;chrX_1569352_1571098 94.12 94.12 100.00 95.83 NA 91.67 95.65 92.31 96.55 100.00 87.50 92.00 92.31 93.75 95.00 96.88 100.00 100.00 94.74 100.00 93.33 72.73 100.00 93.75 100.00 93.33 94.12 NA 88.89 80.95 96.77 92.86 90.48 100.00 100.00 94.12 93.33 NA 100.00 92.59 85.71 100.00 93.75 100.00 92.31 96.43 100.00 96.30 88.89 86.67 95.45 100.00 NA 90.91 95.24 93.75 93.75 91.30 K alternative_donor RpL28,RI_chr3L_3221710_3221877,I_chr3L_3221982_3222744,snoRNA:Or-CD11c,snoRNA:Or-CD11b,snoRNA:Or-CD11a,I_chr3L_3222575_3222787 chr3L - chr3L_3221982_3222787;chr3L_3221982_3222152;chr3L_3221982_3222926;chr3L_3221982_3222365;chr3L_3221982_3222847 chr3L_3221982_3222574 chr3L_3221882_3221981;chr3L_3222927_3222958 0.39 0.00 0.00 0.00 0.00 0.88 1.37 0.11 0.49 2.20 0.00 1.58 0.00 1.96 0.39 0.75 0.33 0.00 0.22 0.43 0.00 0.34 2.94 3.17 0.00 0.00 0.00 8.70 0.00 1.72 0.58 0.23 0.00 0.13 0.00 0.00 4.08 0.00 4.17 1.79 0.00 0.28 0.00 2.56 0.00 0.69 4.00 0.59 0.67 3.85 4.76 4.55 0.59 0.00 0.22 2.86 2.35 0.41 K jcn_only_AD Dscam,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3249373_3250528;chr2R_3249373_3251682;chr2R_3249373_3254309;chr2R_3249373_3253447;chr2R_3249373_3252236;chr2R_3249373_3252816;chr2R_3249373_3253970;chr2R_3249373_3250836;chr2R_3249373_3251960;chr2R_3249373_3251099 chr2R_3249373_3252522 chr2R_3249273_3249372 6.45 0.00 4.26 0.00 8.00 0.00 7.50 12.07 4.88 0.00 NA 7.35 8.11 8.82 12.20 7.55 2.78 0.00 2.86 14.44 12.00 2.50 4.29 5.56 17.02 8.00 8.11 6.45 7.14 4.71 15.69 0.00 8.75 10.91 6.45 11.90 7.27 2.63 7.32 5.62 3.45 7.69 9.38 6.90 4.55 2.63 4.17 8.14 11.94 NA 6.67 5.00 6.45 NA 1.92 5.00 NA 4.35 K jcn_only_AA CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907784_9908424;chr2L_9907848_9908424 chr2L_9908142_9908424 chr2L_9908425_9908505;chr2L_9907756_9907783 0.00 3.28 0.00 0.77 0.00 0.00 0.00 0.98 2.16 NA 8.57 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 4.88 3.45 0.00 0.00 3.77 5.45 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.92 1.92 0.00 2.99 1.72 0.00 0.00 3.33 1.74 0.00 0.00 3.45 2.00 2.27 0.00 2.17 0.00 0.00 3.85 0.00 0.00 1.33 0.00 0.00 0.00 K jcn_only_AA Fur1,I_chr3R_21179590_21179870,CEI_chr3R_21210600_21222433,I_chr3R_21257704_21287086 chr3R - chr3R_21177936_21179870;chr3R_21177915_21179870 chr3R_21179590_21179870 chr3R_21179871_21179970;chr3R_21177839_21177914 1.33 1.47 3.51 0.00 0.00 2.17 0.00 1.30 1.24 1.22 33.33 4.20 0.00 1.79 3.61 3.51 0.00 2.86 2.17 0.61 10.42 2.36 1.71 4.26 1.08 4.17 1.23 0.00 1.48 2.68 1.33 1.59 1.48 0.00 0.00 0.00 0.75 1.30 0.00 5.59 2.25 0.58 0.00 3.25 1.11 2.79 0.00 0.90 1.52 1.33 1.63 1.85 0.00 0.00 2.53 1.33 0.00 1.03 K intron_retention CG31064,RI_chr3R_23056388_23064246,I_chr3R_23069667_23070365 chr3R - chr3R_23056167_23056289 chr3R_23056166_23056167;chr3R_23056289_23056290 chr3R_23055268_23056166;chr3R_23056290_23056387 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Rtc1,I_chrX_13652113_13652182,I_chrX_13653840_13653902 chrX + chrX_13652113_13652182 chrX_13652117_13652182 chrX_13652183_13652247;chrX_13652053_13652112 100.00 100.00 100.00 100.00 100.00 100.00 97.22 97.14 98.04 100.00 93.75 98.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 93.33 100.00 97.62 100.00 100.00 100.00 97.78 100.00 100.00 97.14 100.00 97.62 98.18 96.67 95.45 100.00 100.00 100.00 100.00 98.31 100.00 97.73 100.00 100.00 100.00 100.00 100.00 97.92 94.74 100.00 100.00 100.00 100.00 100.00 96.88 97.83 94.37 96.59 K alternative_acceptor roq,CG4753 chr3L - chr3L_16367765_16367959 chr3L_16367768_16367959 chr3L_16367960_16370110;chr3L_16367508_16367764 88.77 90.32 85.71 94.29 87.50 90.00 83.33 93.75 88.64 84.62 84.62 89.19 60.00 90.91 90.91 90.48 85.71 92.86 90.00 87.72 69.23 90.62 92.86 87.50 90.00 91.67 89.74 81.48 88.24 95.83 91.67 90.91 78.26 81.58 94.74 95.24 83.33 86.05 87.76 87.50 NA 94.12 88.89 86.05 78.95 95.65 93.55 90.91 87.50 81.82 88.64 92.31 82.35 93.75 80.00 86.36 88.46 92.31 K cassette dgt1,CG7824 chr3R - chr3R_25680766_25681674 chr3R_25680766_25680851;chr3R_25681371_25681674 chr3R_25680852_25681370 chr3R_25680427_25680765;chr3R_25681675_25682075 10.71 7.79 15.22 4.92 8.51 11.76 17.24 10.53 15.19 12.96 11.11 15.19 10.81 11.11 10.26 48.57 11.11 8.16 9.38 7.78 17.65 23.26 11.54 7.50 10.00 5.77 16.25 21.88 22.22 14.49 10.20 17.46 19.12 10.61 12.20 7.81 6.61 9.21 12.99 15.32 9.20 10.13 6.45 12.22 10.99 10.08 8.79 8.77 9.76 9.70 10.71 13.33 6.67 11.29 7.41 10.87 6.09 8.40 K jcn_only_AA Ddip2,I_chr3L_252776_253313 chr3L - chr3L_252945_253313 chr3L_252996_253313 chr3L_253314_253413;chr3L_252835_252944 50.00 58.97 33.33 68.33 31.03 48.48 60.00 56.52 58.33 52.38 61.76 66.07 53.57 59.38 31.25 40.43 52.94 50.00 47.50 45.45 37.50 68.52 37.31 52.50 59.09 46.88 42.86 68.97 82.86 42.22 28.95 60.87 46.51 52.73 63.33 56.86 37.25 47.37 47.22 57.50 58.06 60.61 58.33 45.10 61.90 44.44 37.93 58.54 53.45 43.90 50.00 46.43 38.46 NA 48.57 28.12 47.37 47.37 K jcn_only_AA cryptocephal,noncoding_4181,I_chr2L_21311307_21311752,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21311033_21311913 chr2L_21311033_21311752 chr2L_21310948_21311032;chr2L_21311914_21312043 99.93 99.79 99.86 100.00 100.00 100.00 99.81 100.00 100.00 100.00 100.00 99.94 100.00 100.00 99.87 99.89 99.84 99.78 99.91 99.49 100.00 99.64 99.70 100.00 100.00 100.00 99.77 99.17 99.59 99.42 99.90 100.00 100.00 99.94 99.73 100.00 100.00 99.62 99.63 100.00 100.00 99.93 99.87 100.00 99.16 100.00 98.91 99.57 99.81 99.71 100.00 100.00 100.00 99.56 99.90 99.68 100.00 100.00 K intron_retention B52,E_chr3R_9488770_9491174 chr3R + chr3R_9491971_9492140 chr3R_9491970_9491971;chr3R_9492140_9492141 chr3R_9491806_9491970;chr3R_9492141_9492586 0.80 0.79 0.43 1.47 0.00 2.53 0.50 2.73 1.56 0.91 0.00 0.41 2.17 0.00 0.90 2.25 1.56 0.00 1.62 1.10 2.80 0.85 0.54 0.47 0.26 1.66 1.17 1.07 2.17 0.00 0.80 1.26 2.54 0.92 0.52 1.32 0.78 0.43 0.30 0.78 1.12 1.15 0.00 0.59 0.84 0.42 0.18 1.79 1.56 0.18 0.54 1.32 0.56 0.00 0.00 0.71 0.22 1.13 K intron_retention Fancd2 chr3R - chr3R_16640494_16640547 chr3R_16640493_16640494;chr3R_16640547_16640548 chr3R_16640303_16640493;chr3R_16640548_16640616 10.71 NA 0.00 12.50 NA NA 22.22 12.50 10.71 NA NA 18.18 NA NA NA 0.00 NA NA NA 8.33 NA 30.77 8.70 NA 23.08 NA 14.29 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA 0.00 NA 15.62 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA Gp150,I_chr2R_18205316_18205386,I_chr2R_18213233_18213308 chr2R + chr2R_18205243_18205338;chr2R_18205243_18212679 chr2R_18205243_18205386 chr2R_18205216_18205242 99.87 100.00 99.49 99.68 100.00 98.82 99.29 100.00 99.69 100.00 99.38 99.60 100.00 100.00 98.87 99.82 99.78 99.40 99.55 99.87 99.46 98.73 99.52 99.30 99.03 99.71 100.00 97.78 96.77 100.00 99.71 100.00 100.00 100.00 100.00 100.00 99.26 98.00 99.44 100.00 100.00 99.88 100.00 100.00 100.00 100.00 100.00 100.00 99.35 100.00 100.00 100.00 100.00 100.00 99.80 98.41 98.94 100.00 K intron_retention ced-6,I_chr2R_5324717_5324924,I_chr2R_5328640_5328696,I_chr2R_5331785_5332177 chr2R - chr2R_5325238_5328206 chr2R_5325237_5325238;chr2R_5328206_5328207 chr2R_5324931_5325237;chr2R_5328207_5328311 0.26 0.00 0.00 0.00 0.00 0.89 2.65 1.17 0.56 0.00 1.31 0.82 0.00 1.00 0.74 0.67 0.00 0.00 0.00 1.31 0.00 3.21 0.60 0.71 0.00 0.76 1.55 0.00 0.67 0.00 0.47 0.00 0.68 1.05 0.00 1.25 0.00 0.46 0.37 0.59 0.00 0.91 0.00 0.26 0.00 0.00 0.00 0.38 0.21 0.00 0.36 0.00 0.00 0.86 1.27 0.00 0.00 0.00 K intron_retention CG4774,RI_chr3R_21512589_21512972 chr3R - chr3R_21512589_21512667 chr3R_21512588_21512589;chr3R_21512667_21512668 chr3R_21512489_21512588;chr3R_21512668_21512736 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention spin,I_chr2R_12013288_12013847 chr2R + chr2R_12020596_12023531 chr2R_12020595_12020596;chr2R_12023531_12023532 chr2R_12020539_12020595;chr2R_12023532_12023630 9.20 8.89 16.67 21.79 8.33 13.33 8.00 10.26 12.50 2.99 11.11 12.36 6.90 16.67 12.20 7.27 13.33 8.33 16.00 7.59 10.71 29.51 13.54 10.00 9.52 8.33 11.25 3.87 8.64 8.08 12.12 10.61 8.43 14.04 7.46 14.89 9.20 5.17 12.00 8.59 6.48 9.09 9.09 9.73 5.56 9.90 5.63 7.74 8.14 9.38 10.98 10.42 1.30 4.88 16.28 6.94 5.56 4.52 N alternative_donor MED10,I_chr3L_16225377_16225479 chr3L + chr3L_16225377_16225485 chr3L_16225424_16225485 chr3L_16225486_16225579;chr3L_16225277_16225376 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 63.64 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG7580,I_chr3L_17468259_17468509,I_chr3L_17468271_17468509,RI_chr3L_17468444_17468509 chr3L + chr3L_17468236_17468509 chr3L_17468235_17468236;chr3L_17468509_17468510 chr3L_17468171_17468235;chr3L_17468510_17468609 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.38 0.60 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Prp8,I_chr2R_8046315_8046511,I_chr2R_8050245_8050389 chr2R - chr2R_8046289_8046511 chr2R_8046315_8046511 chr2R_8046512_8046611;chr2R_8046215_8046288 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.61 0.00 0.00 0.00 0.70 0.66 1.27 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.49 0.00 0.00 1.45 0.88 1.37 1.16 0.00 K intron_retention RI_chr2R_5006333_5006392,CG11784 chr2R + chr2R_5010073_5010126 chr2R_5010072_5010073;chr2R_5010126_5010127 chr2R_5010068_5010072;chr2R_5010127_5010815 0.00 0.00 0.00 0.00 NA 0.00 NA 2.94 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 6.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 10.00 0.00 NA 2.86 0.00 0.00 0.00 0.00 2.70 0.00 NA 0.00 NA 0.00 0.00 3.70 0.00 NA 0.00 6.67 0.00 NA 0.00 2.94 0.00 0.00 0.00 0.00 K intron_retention SNF1A chrX + chrX_1269789_1269902 chrX_1269788_1269789;chrX_1269902_1269903 chrX_1269580_1269788;chrX_1269903_1270220 100.00 90.91 NA 100.00 NA 100.00 100.00 91.67 100.00 NA 100.00 100.00 88.89 NA 100.00 NA NA NA NA 100.00 NA 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 96.30 100.00 100.00 NA 100.00 100.00 100.00 95.00 100.00 100.00 NA 90.00 100.00 100.00 NA 96.15 92.86 NA 100.00 NA NA NA 100.00 100.00 100.00 100.00 K multi_cassette Haspin,F_chr2RHet_3208841_3212285,F_chr2RHet_3212408_3212898,F_chr2RHet_3213046_3213594 chr2RHet + chr2RHet_3200480_3234342 chr2RHet_3200480_3215005;chr2RHet_3215210_3215266;chr2RHet_3215563_3234342 chr2RHet_3215006_3215209;chr2RHet_3215267_3215562 chr2RHet_3200469_3200479;chr2RHet_3234343_3234575 93.75 87.50 100.00 34.78 75.00 100.00 93.75 95.00 95.24 75.00 100.00 76.47 100.00 100.00 75.00 72.00 85.71 85.71 91.67 100.00 100.00 100.00 100.00 100.00 75.00 80.00 100.00 75.00 33.33 100.00 100.00 83.33 80.00 94.74 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 66.67 66.67 87.50 88.89 83.33 85.00 83.33 100.00 100.00 83.33 100.00 87.50 100.00 92.31 86.67 K intron_retention CG7332,I_chrX_18779996_18780073,RI_chrX_18780777_18780878 chrX + chrX_18780777_18780868 chrX_18780776_18780777;chrX_18780868_18780869 chrX_18780677_18780776;chrX_18780869_18780879 0.00 0.00 0.00 4.88 0.00 0.00 0.00 0.00 3.70 NA 0.00 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 14.29 4.65 5.71 0.00 3.57 11.43 NA 3.85 10.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 0.00 5.88 3.57 0.00 0.00 5.71 0.00 0.00 2.70 4.88 0.00 3.23 0.00 0.00 9.52 2.50 0.00 0.00 0.00 K intron_retention Pez chr2L - chr2L_6333808_6333861 chr2L_6333807_6333808;chr2L_6333861_6333862 chr2L_6333484_6333807;chr2L_6333862_6334038 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 6.25 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6394546_6419543,I_chr2R_6404486_6419543,R_chr2R_6408775_6419537,I_chr2R_6409616_6419543,I_chr2R_6419625_6419686,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6419625_6419685 chr2R_6419624_6419625;chr2R_6419685_6419686 chr2R_6419549_6419624;chr2R_6419686_6420399 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.14 0.21 0.00 0.85 0.00 0.53 0.29 0.39 0.00 0.90 0.89 0.00 0.34 0.29 0.00 0.00 0.18 0.00 0.00 0.18 0.45 0.00 0.00 0.37 0.00 0.00 0.29 0.25 0.00 0.00 0.00 0.25 0.24 0.00 0.00 0.00 0.33 0.00 0.18 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.74 0.12 K cassette Actn,I_chrX_1922061_1924247,I_chrX_1922784_1923807,I_chrX_1922784_1923873 chrX - chrX_1922061_1923807;chrX_1922061_1923873;chrX_1922061_1924247 chrX_1922061_1922697;chrX_1922784_1923807,chrX_1922784_1923873,chrX_1922784_1924247 chrX_1922698_1922783 chrX_1921968_1922060;chrX_1924248_1924347 100.00 100.00 100.00 97.62 96.00 95.83 66.67 100.00 100.00 95.45 100.00 100.00 100.00 95.00 96.77 100.00 100.00 100.00 100.00 98.33 100.00 92.73 97.96 97.56 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 96.43 100.00 100.00 100.00 98.11 97.44 97.44 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 96.00 100.00 100.00 100.00 96.88 100.00 K intron_retention CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1666133_1670219 chr2R_1666132_1666133;chr2R_1670219_1670220 chr2R_1666119_1666132;chr2R_1670220_1670281 100.00 95.24 100.00 100.00 93.75 100.00 97.67 100.00 98.08 100.00 100.00 98.08 100.00 96.67 96.15 98.41 100.00 100.00 100.00 98.46 100.00 100.00 95.24 100.00 100.00 95.24 100.00 NA 100.00 95.83 100.00 100.00 100.00 93.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.23 100.00 100.00 100.00 97.92 92.86 98.55 97.18 100.00 96.77 100.00 100.00 100.00 100.00 100.00 94.74 98.33 K alternative_donor CG14621,tilB chrX + chrX_21848011_21848366 chrX_21848015_21848366 chrX_21848367_21848914;chrX_21847885_21848010 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 2.86 2.38 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette tan,R_chr3L_6048520_6048578,R_chr3L_6048608_6048676 chr3L + chr3L_6048520_6048816 chr3L_6048520_6048689;chr3L_6048764_6048816 chr3L_6048690_6048763 chr3L_6048508_6048519;chr3L_6048817_6048925 100.00 85.71 87.50 100.00 100.00 NA 100.00 100.00 93.33 NA 100.00 100.00 100.00 87.50 90.91 100.00 100.00 87.50 88.89 93.75 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 83.33 88.89 NA NA 100.00 NA NA 92.86 100.00 90.91 100.00 NA 100.00 90.91 88.89 NA 85.71 90.91 85.71 100.00 NA 91.67 100.00 NA 100.00 100.00 NA 100.00 100.00 K intron_retention CG31224 chr3R - chr3R_14477642_14477781 chr3R_14477641_14477642;chr3R_14477781_14477782 chr3R_14475982_14477641;chr3R_14477782_14478758 0.00 0.00 0.00 3.51 0.00 0.00 3.12 3.77 1.01 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 1.57 1.28 0.00 0.00 1.16 2.41 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 2.50 0.00 0.00 3.23 2.20 0.00 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 K alternative_donor CG1354,I_chrX_9672972_9673084,I_chrX_9673026_9673084 chrX + chrX_9673026_9673084;chrX_9672972_9673084;chrX_9672967_9673084 chrX_9672947_9673084 chrX_9673085_9673184;chrX_9672926_9672946 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.80 100.00 100.00 100.00 100.00 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.68 97.62 100.00 100.00 100.00 100.00 100.00 100.00 98.46 100.00 100.00 98.44 94.12 100.00 100.00 97.30 100.00 100.00 100.00 K intron_retention aub chr2L - chr2L_10999451_10999517 chr2L_10999450_10999451;chr2L_10999517_10999518 chr2L_10999061_10999450;chr2L_10999518_10999672 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4630,RI_chr2R_9103472_9103634,I_chr2R_9103765_9103852,I_chr2R_9103956_9104108,RI_chr2R_9104206_9104265,I_chr2R_9105809_9106399 chr2R - chr2R_9105705_9106592 chr2R_9105704_9105705;chr2R_9106592_9106593 chr2R_9105094_9105704;chr2R_9106593_9106722 14.29 NA NA NA NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA NA 15.38 5.56 14.29 NA 11.11 NA NA NA 5.56 NA NA NA 12.50 27.78 NA NA 4.55 11.11 NA 28.57 NA NA NA NA 14.29 NA 14.29 NA NA NA NA NA NA NA NA NA K alternative_donor CG18766,I_chr3R_23069667_23070256,I_chr3R_23069667_23070318,RI_chr3R_23069667_23070361,I_chr3R_23069667_23070365 chr3R - chr3R_23069667_23070732;chr3R_23069667_23070911 chr3R_23069667_23070738 chr3R_23069567_23069666;chr3R_23070912_23070951 82.86 91.67 79.07 81.33 75.86 68.75 76.56 81.08 76.34 86.67 84.38 78.48 72.22 78.57 70.83 77.27 84.21 82.86 85.00 81.91 69.23 72.41 88.68 82.35 96.43 88.46 91.18 94.12 72.73 90.00 84.78 68.97 81.08 78.79 83.33 93.55 83.78 89.66 87.88 77.94 88.89 72.97 78.38 79.41 72.73 92.59 81.58 92.86 80.00 84.62 85.11 90.32 88.00 92.59 76.00 87.80 87.80 87.80 N alternative_last_exon CG14235,noncoding_24847,CG18809,noncoding_24848 chrX - chrX_19635199_19638032 chrX_19637740_19638032 chrX_19634580_19635198 chrX_19637477_19637739 chrX_19638033_19638057 8.33 22.22 6.25 8.33 9.09 14.29 11.11 10.00 5.88 9.09 16.67 13.33 16.67 5.26 7.14 5.26 11.11 11.11 16.67 41.18 8.33 20.00 6.25 8.33 7.14 7.14 28.57 10.00 10.00 6.67 2.38 4.00 3.28 10.00 17.65 13.33 13.33 11.76 13.64 3.70 5.19 3.70 5.00 4.00 3.90 3.64 7.41 9.68 7.14 3.03 11.11 25.00 6.67 7.69 10.00 7.69 2.94 3.90 K alternative_acceptor CG10732,I_chr3L_13438999_13439071 chr3L + chr3L_13438999_13439111 chr3L_13438999_13439108 chr3L_13438899_13438998;chr3L_13439112_13439171 12.50 22.22 7.69 11.54 14.29 25.00 11.11 16.67 11.11 11.11 26.67 15.38 NA NA 12.50 4.35 NA 7.69 NA 12.50 NA 8.57 10.71 9.52 11.11 12.50 12.50 11.54 10.00 23.81 23.08 10.00 19.05 22.22 7.14 17.65 12.24 10.53 23.08 18.60 NA 10.00 6.67 17.86 19.05 NA 15.79 17.65 15.38 18.18 9.38 12.50 11.76 20.00 19.05 17.65 19.05 26.67 N jcn_only_AA Pmi,PGRP-LD chr3L + chr3L_5775409_5775770 chr3L_5775409_5775724 chr3L_5775097_5775408;chr3L_5775771_5775948 35.50 NA NA 0.00 NA NA 40.00 0.00 32.50 NA NA 50.00 NA NA NA NA NA NA NA 35.29 NA 42.42 42.31 NA NA 65.22 NA NA NA NA 35.53 NA 42.31 0.00 NA NA NA NA NA NA NA 29.17 NA NA NA NA NA NA 35.56 NA NA NA NA NA 0.00 NA 35.48 NA K intron_retention CG6617,RI_chrX_18544139_18544185 chrX - chrX_18544126_18544185 chrX_18544125_18544126;chrX_18544185_18544186 chrX_18544039_18544125;chrX_18544186_18544285 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.98 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA gcl,I_chr2R_4611970_4612145,I_chr2R_4614277_4614332 chr2R + chr2R_4611970_4614119 chr2R_4611970_4612145 chr2R_4611870_4611969;chr2R_4614120_4614231 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 3.57 NA NA NA 0.00 NA 10.00 NA 4.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 3.12 NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 6.67 NA NA NA NA NA NA NA NA 0.00 K cassette CG34140,CG34140_Mkp,noncoding_9561 chr3L - chr3L_184073_184317 chr3L_184073_184131;chr3L_184261_184317 chr3L_184132_184260 chr3L_184008_184072;chr3L_184318_184328 96.67 96.55 100.00 90.91 95.65 100.00 97.37 95.12 98.25 95.45 96.00 96.08 96.30 100.00 96.97 91.18 100.00 96.15 100.00 94.83 100.00 100.00 93.75 97.67 96.15 87.50 96.88 96.67 87.50 100.00 95.56 95.00 100.00 97.37 95.83 96.77 100.00 100.00 100.00 97.67 93.33 96.43 96.30 97.37 94.44 100.00 100.00 95.24 96.36 93.10 97.87 96.67 92.31 100.00 100.00 96.88 100.00 95.83 K intron_retention CG17278 chr3R - chr3R_16847307_16848392 chr3R_16847306_16847307;chr3R_16848392_16848393 chr3R_16847127_16847306;chr3R_16848393_16849968 1.15 0.68 0.89 1.03 1.92 0.64 2.21 1.63 1.24 1.69 1.58 0.90 0.54 0.79 0.85 0.70 0.96 8.38 1.09 1.33 1.88 3.02 0.81 0.95 1.15 0.75 1.00 4.12 1.12 1.35 0.00 1.69 4.27 1.38 1.63 1.47 1.14 0.00 0.97 1.64 1.39 0.70 0.91 0.65 2.26 1.87 1.17 3.43 1.13 1.80 1.81 1.05 1.35 1.85 1.12 0.57 1.05 2.76 K intron_retention Trs23 chr2L + chr2L_8686493_8686549 chr2L_8686492_8686493;chr2L_8686549_8686550 chr2L_8686210_8686492;chr2L_8686550_8687169 3.63 0.00 0.00 25.58 NA 0.00 0.00 8.70 6.06 7.69 0.00 3.92 0.00 3.85 0.00 4.17 0.00 0.00 0.00 2.11 0.00 16.67 8.57 7.69 5.88 0.00 8.11 30.43 6.06 0.00 3.45 4.08 9.26 2.38 0.00 6.67 3.77 0.00 4.00 4.35 17.24 1.72 0.00 5.26 7.89 8.77 3.28 14.81 4.17 5.77 3.49 3.33 0.00 1.72 0.00 0.00 3.45 5.26 K intron_retention cyc,RI_chr3L_19810268_19810326 chr3L - chr3L_19808596_19808854 chr3L_19808595_19808596;chr3L_19808854_19808855 chr3L_19808521_19808595;chr3L_19808855_19809028 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 0.00 K intron_retention CG2865 chrX - chrX_2176551_2186357 chrX_2176550_2176551;chrX_2186357_2186358 chrX_2176457_2176550;chrX_2186358_2187326 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 11.76 NA NA NA NA NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA NA NA 0.00 NA NA NA K intron_retention I_chrX_20906749_20909772,Mgstl,noncoding_25026 chrX + chrX_20914329_20914706 chrX_20914328_20914329;chrX_20914706_20914707 chrX_20914086_20914328;chrX_20914707_20914747 0.45 0.00 0.88 1.16 0.00 0.00 0.39 0.00 0.45 1.79 0.00 0.93 0.74 0.97 0.40 1.17 0.00 1.03 0.00 0.00 1.20 0.00 1.14 0.00 0.00 0.53 0.70 2.60 0.70 0.00 0.00 0.00 0.64 0.65 0.00 0.00 0.00 0.61 1.35 0.76 0.00 0.25 0.49 0.77 0.00 0.56 1.01 0.26 0.00 1.26 0.54 0.70 1.46 0.00 0.00 0.34 0.66 0.00 K intron_retention I_chr3R_23749027_23749091,CG5508,E_chr3R_23755071_23758533 chr3R + chr3R_23755619_23755702 chr3R_23755618_23755619;chr3R_23755702_23755703 chr3R_23755129_23755618;chr3R_23755703_23755867 0.00 NA NA 6.67 NA 0.00 20.00 NA 5.26 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 20.83 0.00 0.00 NA NA 0.00 20.00 0.00 0.00 NA NA 0.00 NA NA 14.29 0.00 0.00 NA 3.57 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K jcn_only_AA CG11055 chr2R + chr2R_16145258_16145691 chr2R_16145258_16145538 chr2R_16145189_16145257;chr2R_16145692_16148064 5.00 NA NA 10.81 0.00 0.00 25.93 0.00 8.33 NA 10.00 3.45 33.33 NA 5.00 NA NA NA NA 7.02 9.09 29.55 0.00 4.00 NA NA NA 2.86 0.00 3.45 NA NA 3.28 8.33 0.00 NA 8.33 NA 6.25 0.00 NA 7.89 NA 0.00 NA NA NA 2.33 15.91 NA 7.41 NA NA NA 19.23 NA NA 2.70 K alternative_acceptor CG8184,I_chrX_15620707_15620769 chrX + chrX_15609611_15609693 chrX_15609611_15609690 chrX_15609339_15609610;chrX_15609694_15610187 27.84 31.25 30.00 18.18 33.33 52.38 24.00 30.00 30.00 22.22 18.18 28.30 28.57 26.09 21.05 22.73 26.92 27.27 27.27 18.92 25.00 25.45 28.17 27.91 31.71 34.48 29.79 25.00 26.09 25.00 30.00 NA 24.24 22.73 29.03 22.22 29.23 23.68 28.85 33.33 NA 34.04 28.57 27.03 NA 30.77 NA 29.41 33.33 NA 27.78 22.73 35.71 NA 26.47 NA NA NA N cassette RpS5a,I_chrX_17037805_17040830,I_chrX_17038786_17039048,I_chrX_17041053_17041104,I_chrX_17041234_17041901,I_chrX_17041234_17041720,RI_chrX_17041234_17041750,RI_chrX_17041234_17041760,I_chrX_17041234_17041832,I_chrX_17041234_17041844 chrX - chrX_17039166_17042236 chrX_17039166_17040830;chrX_17041234_17042236 chrX_17040831_17041233 chrX_17039049_17039165;chrX_17042237_17042336 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.69 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG34449,I_chrX_9222628_9227416,RI_chrX_9232665_9233022,RI_chrX_9249209_9250033,RI_chrX_9249212_9250033,RI_chrX_9249212_9250244 chrX - chrX_9227656_9231026 chrX_9227656_9230957 chrX_9227417_9227655;chrX_9231027_9231270 85.19 82.05 93.10 93.33 85.71 85.19 90.00 90.00 87.27 79.25 68.97 89.58 87.50 95.00 91.43 90.48 85.19 96.55 86.96 88.16 96.00 71.67 80.36 79.10 80.00 89.66 81.13 82.00 73.33 83.02 96.67 85.19 88.30 82.98 80.00 85.45 80.65 78.95 84.91 69.01 79.41 86.96 91.30 79.31 86.27 76.47 78.95 80.68 83.93 86.67 79.45 85.71 91.18 76.92 82.05 78.79 95.83 91.84 K jcn_only_AA Cf2,I_chr2L_4882802_4882864 chr2L - chr2L_4882366_4882888 chr2L_4882493_4882888 chr2L_4882889_4882964;chr2L_4881215_4882365 95.84 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 96.43 NA NA 90.62 NA NA NA NA NA NA 89.74 NA NA NA NA NA NA NA 96.88 NA NA NA NA NA NA NA NA NA 95.24 K intron_retention CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4991263_4991384 chr2L_4991262_4991263;chr2L_4991384_4991385 chr2L_4991145_4991262;chr2L_4991385_4991392 40.00 NA NA NA NA NA NA 61.54 NA NA NA 69.23 NA NA NA NA 56.25 NA NA NA NA 26.67 NA 35.71 NA NA 63.16 88.89 21.43 NA NA NA 37.50 63.64 NA 20.00 NA NA NA 40.00 NA 87.50 NA NA NA NA NA 33.33 NA NA NA NA NA NA NA 36.36 NA NA K alternative_acceptor I_chr2L_10341933_10342155,CG5025 chr2L + chr2L_10343605_10343685 chr2L_10343605_10343658 chr2L_10343538_10343604;chr2L_10343686_10343750 100.00 100.00 100.00 100.00 100.00 91.67 97.06 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 98.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 85.71 100.00 100.00 100.00 100.00 100.00 K intron_retention CG4662 chr3R + chr3R_15673358_15675733 chr3R_15673357_15673358;chr3R_15675733_15675734 chr3R_15673115_15673357;chr3R_15675734_15675875 19.62 11.76 28.57 28.57 18.18 11.11 44.44 33.33 23.08 21.43 21.05 21.43 40.00 NA 36.36 29.41 22.22 23.08 23.53 45.45 42.86 18.75 14.81 12.50 NA NA 25.93 11.11 26.32 11.11 30.77 NA 20.00 20.00 0.00 31.25 13.33 19.05 8.00 8.33 20.00 14.29 0.00 23.08 NA 14.29 23.81 0.00 18.92 10.71 19.23 0.00 11.76 6.67 24.00 13.04 10.53 11.76 K cassette CG17715,RI_chr2L_22742106_22742215,I_chr2L_22742106_22746918 chr2L + chr2L_22742106_22746918 chr2L_22742106_22742160;chr2L_22742365_22746918 chr2L_22742161_22742364 chr2L_22742093_22742105;chr2L_22746919_22746924 100.00 98.72 100.00 99.22 100.00 100.00 100.00 100.00 100.00 98.21 100.00 99.25 100.00 98.65 100.00 100.00 100.00 100.00 100.00 99.42 100.00 98.36 100.00 98.82 98.08 93.44 100.00 100.00 97.78 98.65 99.26 98.57 100.00 100.00 98.31 100.00 100.00 100.00 100.00 100.00 93.85 99.37 98.44 97.65 100.00 99.14 100.00 99.18 100.00 99.07 100.00 98.68 98.31 98.39 100.00 98.63 100.00 100.00 K alternative_acceptor eIF5,noncoding_24049,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15885411_15885854 chrX_15885416_15885854 chrX_15885855_15885912;chrX_15885316_15885410 90.45 NA 100.00 NA NA NA 91.67 90.91 90.91 NA NA 92.31 NA 100.00 NA 85.19 NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA 84.62 NA NA 87.50 NA 85.71 NA NA NA NA NA NA NA NA NA 100.00 NA NA 88.89 NA NA NA NA NA NA NA NA 88.89 K jcn_only_AA CG14997 chr3L + chr3L_4240892_4240985 chr3L_4240892_4240951 chr3L_4240786_4240891;chr3L_4240986_4241176 100.00 100.00 NA 96.77 NA NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA 100.00 NA 100.00 96.43 100.00 NA 95.65 NA NA NA NA 85.00 NA 100.00 100.00 NA 91.67 96.88 100.00 94.12 100.00 95.24 96.30 NA 100.00 NA 100.00 97.56 100.00 97.83 96.00 NA NA 100.00 100.00 100.00 100.00 97.73 100.00 K alternative_acceptor Klc,I_chr3L_12741779_12743062,I_chr3L_12741783_12742943,I_chr3L_12741838_12743062 chr3L - chr3L_12741779_12743062;chr3L_12741838_12743062 chr3L_12741783_12743062 chr3L_12743063_12743083;chr3L_12741738_12741778 96.23 95.92 95.38 95.05 97.78 100.00 93.60 98.94 94.61 95.00 96.43 94.44 98.41 98.08 98.04 92.31 94.34 95.74 95.45 94.03 98.31 98.44 97.01 97.50 94.12 88.46 94.12 100.00 94.12 90.62 94.83 96.15 90.91 96.97 100.00 97.50 100.00 96.97 95.65 97.78 100.00 96.23 97.78 98.28 92.00 98.21 93.75 88.89 93.68 95.56 98.33 97.87 100.00 96.15 100.00 98.04 95.24 96.97 N alternative_donor RI_chrX_8608147_8608508,I_chrX_8608169_8608438,l(1)G0020 chrX - chrX_8610980_8611119 chrX_8610980_8611115 chrX_8610747_8610979;chrX_8611120_8612089 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 NA 9.26 NA 0.00 14.89 13.51 0.00 0.00 0.00 0.00 0.00 0.00 NA 12.50 12.20 0.00 0.00 0.00 0.00 0.00 14.29 9.52 8.33 13.16 NA 0.00 9.09 8.47 0.00 0.00 10.53 0.00 11.43 0.00 0.00 0.00 NA 0.00 10.34 9.43 K jcn_only_AA CG31075,I_chr3R_22814057_22814129 chr3R - chr3R_22813061_22814129 chr3R_22814057_22814129 chr3R_22814130_22814229;chr3R_22812956_22813060 0.33 0.00 0.59 2.45 0.00 0.70 0.00 0.32 0.88 0.69 0.79 0.30 0.78 0.62 0.00 0.33 0.00 0.00 0.68 0.25 0.82 0.00 0.56 0.36 0.00 0.00 0.32 1.08 0.00 0.00 0.91 0.88 0.00 0.42 1.01 0.71 0.46 1.01 0.41 0.26 0.00 0.34 0.00 0.34 1.41 0.00 0.47 0.00 0.00 0.59 0.68 1.36 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Osi19 chr3R + chr3R_2161921_2162001 chr3R_2161920_2161921;chr3R_2162001_2162002 chr3R_2161644_2161920;chr3R_2162002_2162010 0.00 NA NA 0.00 NA 0.00 NA 0.00 4.55 NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 NA 4.76 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 7.14 NA 0.00 6.25 NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA NA NA NA 0.00 NA NA NA K jcn_only_AD skpA chrX + chrX_550433_551131;chrX_550498_551131;chrX_550818_551131;chrX_550638_551131;chrX_550774_551131;chrX_550523_551131 chrX_550654_551131 chrX_551132_551937;chrX_550426_550432 0.28 0.00 1.32 1.61 0.00 2.16 0.37 0.00 0.00 0.00 1.19 1.19 0.55 0.68 0.00 1.08 0.00 3.28 0.00 0.61 0.00 0.00 0.43 1.38 0.00 0.00 1.52 1.20 1.14 0.68 0.00 0.00 0.00 0.45 1.11 0.00 0.28 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.74 1.02 0.59 0.78 0.76 0.54 0.00 0.00 2.21 0.00 0.00 0.00 0.00 0.44 K alternative_donor Trx-2,I_chr2L_9613459_9615301,I_chr2L_9613592_9615301,E_chr2L_9615344_9615833,I_chr2L_9615252_9615301 chr2L + chr2L_9613376_9615301;chr2L_9613541_9615301 chr2L_9615252_9615301 chr2L_9615302_9615343;chr2L_9613359_9613375 1.60 0.59 2.20 1.83 2.05 1.42 3.03 2.59 1.84 0.87 1.55 1.85 2.94 2.37 1.88 1.86 1.80 2.13 1.86 1.93 1.35 2.91 0.72 0.88 0.83 1.48 1.12 3.32 1.68 1.05 1.66 1.48 3.05 2.28 1.44 1.27 0.50 0.43 0.55 1.03 1.62 2.14 2.42 0.48 1.94 1.30 0.84 1.87 1.71 0.74 1.10 1.33 0.68 0.61 1.60 0.34 0.64 1.99 K alternative_donor I_chrX_4000307_4003527,CG4857 chrX + chrX_4014458_4014534 chrX_4014474_4014534 chrX_4014535_4014601;chrX_4014329_4014457 1.48 0.00 0.00 1.09 3.12 5.00 3.77 0.00 3.80 NA 0.00 0.00 2.33 0.00 1.92 1.59 0.00 2.13 1.89 2.67 0.00 5.56 1.54 4.44 4.17 1.96 4.65 2.94 3.23 0.00 1.39 0.00 0.00 4.44 0.00 2.13 0.00 0.00 0.00 1.41 0.00 2.33 1.96 0.00 0.00 4.55 0.00 0.00 3.96 5.26 0.00 2.70 NA 0.00 0.00 3.85 NA 0.00 N intron_retention CG6199 chr3L - chr3L_11196773_11197305 chr3L_11196772_11196773;chr3L_11197305_11197306 chr3L_11196633_11196772;chr3L_11197306_11197316 0.00 0.00 8.33 0.00 0.00 0.00 0.00 6.45 0.00 NA 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 5.41 0.00 0.00 6.90 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 5.13 0.00 0.00 2.78 0.00 0.00 NA NA NA 4.35 0.00 NA NA N cassette Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11837971_11840340 chr2R_11837971_11838672;chr2R_11838972_11840340 chr2R_11838673_11838971 chr2R_11837919_11837970;chr2R_11840341_11840725 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Mnf,RI_chr3L_11108913_11109028 chr3L - chr3L_11111166_11113709;chr3L_11111166_11113381 chr3L_11111166_11112264 chr3L_11110405_11111165;chr3L_11113710_11113829 0.00 5.00 2.33 0.00 0.00 0.00 0.00 2.67 1.79 NA 3.33 0.00 0.00 0.00 0.00 0.00 3.57 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 1.43 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.17 2.08 NA 0.00 3.85 0.00 3.12 0.00 2.78 0.00 NA 0.00 4.55 0.00 0.00 0.00 2.78 K cassette zormin,I_chr3L_2128755_2129053,RI_chr3L_2139943_2140057 chr3L - chr3L_2126671_2129053 chr3L_2126671_2127077;chr3L_2128761_2129053 chr3L_2127078_2128760 chr3L_2125239_2126670;chr3L_2129054_2129153 2.90 4.76 0.00 6.25 NA 0.00 5.56 0.00 3.03 5.88 NA 2.44 NA 4.35 0.00 7.41 0.00 0.00 0.00 10.81 0.00 10.81 5.13 2.70 5.56 0.00 2.86 5.56 3.85 3.45 4.35 0.00 14.04 2.86 3.23 15.15 4.88 0.00 2.94 1.18 0.00 2.78 0.00 0.00 2.13 2.38 3.45 2.82 2.56 6.45 2.33 0.00 4.55 5.88 4.76 4.17 4.35 2.22 K intron_retention E(Pc) chr2R + chr2R_7343261_7343324 chr2R_7343260_7343261;chr2R_7343324_7343325 chr2R_7343093_7343260;chr2R_7343325_7343506 0.00 0.00 0.00 0.00 0.00 0.00 6.67 8.33 1.69 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 17.78 0.00 0.00 12.50 0.00 8.33 12.00 12.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 5.00 NA 5.13 0.00 10.53 NA 0.00 0.00 NA 0.00 K alternative_donor eIF-5A,I_chr2R_19945430_19946454,I_chr2R_19945576_19946006,I_chr2R_19945723_19946006,I_chr2R_19945783_19946006,I_chr2R_19945852_19946006,I_chr2R_19945875_19946006,I_chr2R_19945921_19946006,I_chr2R_19946299_19946454,I_chr2R_19946657_19946733,I_chr2R_19948517_19948682 chr2R + chr2R_19945576_19946006;chr2R_19945921_19946006;chr2R_19945875_19946006;chr2R_19945430_19946006 chr2R_19945426_19946006 chr2R_19946007_19946106;chr2R_19945343_19945425 7.11 7.13 7.26 8.18 6.21 6.59 5.81 7.47 5.59 7.80 5.03 7.18 6.28 7.24 7.11 5.55 5.94 7.21 6.84 7.35 7.20 11.45 5.34 4.59 5.66 8.25 7.14 7.00 9.71 12.33 7.45 8.32 11.25 6.87 8.33 8.58 5.15 5.05 5.96 5.98 8.26 6.42 6.42 5.65 8.01 7.39 6.03 8.75 6.55 5.44 7.47 4.11 7.70 7.48 6.34 5.34 5.69 9.84 K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27761114_27762991,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27707594_27801169 chr3R_27707594_27747354;chr3R_27747397_27757793;chr3R_27758337_27784756;chr3R_27784850_27798223;chr3R_27798276_27801169 chr3R_27747355_27747396;chr3R_27757794_27758336;chr3R_27784757_27784849;chr3R_27798224_27798275 chr3R_27707494_27707593;chr3R_27801170_27801219 83.34 NA NA NA NA NA NA NA 100.00 NA NA 66.67 NA 100.00 100.00 NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA 100.00 NA 66.67 NA 66.67 NA NA NA NA 50.00 NA NA NA NA NA NA NA NA 66.67 K alternative_donor cnn,I_chr2R_9333096_9336723,I_chr2R_9333096_9336812,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9334834_9336812;chr2R_9334834_9336501;chr2R_9334834_9336719 chr2R_9334834_9336723 chr2R_9334744_9334833;chr2R_9336813_9336819 9.09 7.69 6.67 7.14 11.11 9.09 12.20 6.45 0.00 10.53 6.67 10.53 4.76 11.76 15.38 3.03 16.67 14.29 11.11 15.56 16.67 8.11 8.82 5.56 5.26 0.00 2.94 2.86 2.56 9.09 17.39 9.09 5.26 3.12 7.69 11.11 11.11 9.09 7.69 17.39 9.52 16.00 23.08 6.82 27.27 3.85 12.50 6.67 12.50 11.11 4.35 17.65 0.00 11.11 21.05 8.33 10.00 10.53 K jcn_only_AD key,I_chr2R_20674567_20674813,I_chr2R_20674654_20674897,RI_chr2R_20676692_20676888 chr2R - chr2R_20674654_20674897 chr2R_20674654_20674813 chr2R_20674554_20674653;chr2R_20674898_20674903 98.51 97.14 93.10 93.00 94.87 95.35 98.88 98.96 95.24 NA 90.91 94.69 92.59 96.23 93.75 95.36 100.00 90.00 98.21 93.65 100.00 99.00 100.00 100.00 98.00 94.87 100.00 95.83 NA 98.28 92.59 97.78 100.00 100.00 100.00 100.00 100.00 100.00 98.53 100.00 96.67 94.90 100.00 98.88 94.29 100.00 100.00 100.00 97.00 100.00 100.00 100.00 96.97 98.51 98.18 100.00 100.00 98.59 K jcn_only_AA CG8526 chr3R + chr3R_5627575_5627638 chr3R_5627575_5627635 chr3R_5627506_5627574;chr3R_5627639_5627704 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA 96.77 100.00 NA NA NA 100.00 NA 100.00 97.14 NA NA 96.15 100.00 NA NA NA NA NA NA NA NA NA 95.83 NA NA NA 85.00 NA NA NA 96.15 NA NA NA NA NA NA 100.00 NA NA NA NA NA 95.24 NA 100.00 NA K intron_retention Arf51F,I_chr2R_11210733_11210953 chr2R + chr2R_11210733_11210953 chr2R_11210732_11210733;chr2R_11210953_11210954 chr2R_11210633_11210732;chr2R_11210954_11211053 90.91 NA NA 90.91 NA NA 95.24 90.91 86.67 NA NA 96.77 NA NA NA NA NA NA NA NA NA 100.00 70.00 NA NA 100.00 100.00 NA 88.89 NA NA NA NA 92.31 NA 96.77 NA NA NA 90.00 90.91 83.33 88.89 NA NA NA NA NA 77.78 NA NA NA NA NA 87.50 NA NA NA K alternative_acceptor CG7381,I_chr3R_8796541_8802728 chr3R - chr3R_8795968_8796044 chr3R_8795971_8796044 chr3R_8796045_8796162;chr3R_8795353_8795967 90.48 91.67 100.00 93.33 92.31 NA 100.00 90.48 88.57 NA 100.00 84.21 87.50 100.00 91.67 91.67 88.89 88.89 87.50 90.91 81.82 93.33 NA NA NA NA NA NA NA NA 93.75 88.89 91.67 93.75 88.89 NA 88.89 NA 90.00 100.00 NA 84.62 90.91 NA NA 91.67 NA 77.78 90.48 NA 83.33 NA NA 88.89 83.33 NA NA NA K cassette CG1358,I_chr2R_3485171_3489936 chr2R - chr2R_3485171_3489936 chr2R_3485171_3485720;chr2R_3485863_3489936 chr2R_3485721_3485862 chr2R_3485071_3485170;chr2R_3489937_3490036 97.83 95.77 97.50 76.67 98.21 97.56 97.92 98.18 96.85 97.83 97.50 95.83 91.67 97.62 98.18 100.00 100.00 100.00 97.78 99.07 100.00 88.64 98.91 96.15 97.92 100.00 98.48 94.74 82.50 98.36 96.72 98.08 91.30 97.22 97.92 97.87 95.93 95.00 96.70 94.74 97.96 99.09 100.00 98.41 96.88 98.72 96.88 94.52 97.25 94.74 95.92 100.00 98.67 98.41 95.95 98.51 98.81 98.67 K alternative_donor Npc1a chr2L - chr2L_10218890_10220796;chr2L_10218890_10220834;chr2L_10218890_10220692 chr2L_10218890_10220868 chr2L_10218779_10218889;chr2L_10220869_10220873 13.64 24.00 22.22 13.64 18.75 18.75 9.68 15.38 10.77 23.08 10.00 10.00 23.53 9.52 28.00 4.26 16.67 14.81 13.33 9.52 11.76 11.11 16.67 14.29 18.18 18.75 5.56 12.50 13.64 8.70 3.57 0.00 17.39 12.07 6.25 5.00 22.22 12.50 23.08 16.22 18.18 12.73 13.04 15.15 11.11 12.50 28.57 9.52 15.00 16.67 9.09 25.00 12.50 25.00 15.38 27.27 40.00 4.17 K jcn_only_AD Ucp4A chrX + chrX_17739458_17739522;chrX_17739394_17739522;chrX_17739454_17739522 chrX_17739432_17739522 chrX_17739523_17739558;chrX_17739094_17739393 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention faf,RI_chr3R_27603474_27603893,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27610007_27610064 chr3R_27610006_27610007;chr3R_27610064_27610065 chr3R_27608641_27610006;chr3R_27610065_27610488 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 2.24 0.00 0.00 1.03 0.00 0.00 2.56 0.00 0.00 0.00 1.64 1.09 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 1.04 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 NA K jcn_only_AD CG4699 chr3R + chr3R_11624200_11624445;chr3R_11624133_11624445;chr3R_11624190_11624445 chr3R_11624127_11624445 chr3R_11624446_11624758;chr3R_11623809_11624126 25.00 30.00 35.00 30.77 38.10 NA 14.29 NA 23.08 16.22 NA 37.14 NA NA NA NA NA NA NA 40.48 NA 22.86 14.29 21.88 20.59 31.82 18.52 29.82 35.71 33.33 30.00 15.79 39.06 33.33 25.00 29.31 17.14 15.09 15.09 11.11 14.29 39.22 NA 23.81 55.88 25.00 14.63 43.86 10.87 18.00 16.67 8.00 26.67 24.14 42.42 28.12 26.09 50.00 K intron_retention RhoGDI chr3L + chr3L_19921875_19923920 chr3L_19921874_19921875;chr3L_19923920_19923921 chr3L_19921868_19921874;chr3L_19923921_19924114 100.00 90.91 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 97.62 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 NA K intron_retention deltaCOP,I_chrX_1754047_1754089,I_chrX_1755132_1755191,E_chrX_1755139_1755188,I_chrX_1757755_1757801 chrX - chrX_1755519_1755627 chrX_1755518_1755519;chrX_1755627_1755628 chrX_1755479_1755518;chrX_1755628_1755707 0.00 0.00 0.00 1.10 0.00 0.00 2.13 0.47 0.00 3.12 1.54 0.47 0.00 0.00 1.35 0.00 0.00 0.00 0.00 1.05 0.00 2.90 0.00 0.00 1.09 0.00 0.61 1.85 5.10 0.00 0.65 0.00 0.00 0.56 0.00 1.83 0.00 0.00 1.18 1.32 2.27 1.20 0.00 0.79 0.00 1.28 0.00 3.33 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Rheb,I_chr3R_1395050_1395121,CRMP chr3R + chr3R_1394994_1395121 chr3R_1395050_1395121 chr3R_1395122_1395193;chr3R_1394950_1394993 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.96 1.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.78 0.00 0.00 1.80 0.00 3.80 1.14 0.86 0.00 0.69 0.65 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.51 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.67 K intron_retention bif,I_chrX_11581793_11583233 chrX + chrX_11573323_11574876 chrX_11573322_11573323;chrX_11574876_11574877 chrX_11573237_11573322;chrX_11574877_11575147 16.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG6340,I_chrX_15402291_15403750 chrX + chrX_15378926_15379154 chrX_15378926_15378979 chrX_15378907_15378925;chrX_15379155_15379301 60.00 83.33 NA 71.43 NA NA NA NA 80.00 80.00 NA 66.67 NA NA NA NA NA NA NA 55.56 NA 69.23 63.64 60.00 NA NA 57.14 57.14 NA 55.56 NA 41.67 50.00 NA 50.00 NA 66.67 57.14 83.33 40.00 66.67 63.64 NA 83.33 62.50 50.00 83.33 41.67 NA 60.00 55.56 NA 71.43 NA NA 57.14 50.00 41.18 K intron_retention CG10103,noncoding_10997 chr3L - chr3L_6747594_6747844 chr3L_6747593_6747594;chr3L_6747844_6747845 chr3L_6747493_6747593;chr3L_6747845_6747905 5.97 9.26 8.33 10.00 10.53 2.27 19.23 7.14 11.36 0.00 4.65 4.30 12.50 14.29 6.56 13.33 7.14 11.63 7.35 9.09 4.65 1.83 5.88 7.04 5.71 0.00 1.69 6.38 5.00 5.08 7.69 0.00 0.00 14.08 8.00 0.00 7.81 6.82 0.00 5.19 3.70 5.22 11.76 8.54 2.27 4.58 4.62 5.26 10.53 2.22 8.86 7.32 3.45 0.00 8.70 5.97 2.90 3.77 K alternative_acceptor l(2)NC136,I_chr2R_1545723_1546024 chr2R - chr2R_1545081_1545147;chr2R_1545087_1545147 chr2R_1545003_1545147 chr2R_1545148_1545722;chr2R_1544877_1545002 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 1.89 1.82 0.00 2.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 2.38 3.57 2.38 0.00 0.00 1.20 1.82 0.00 0.00 0.00 3.12 0.00 0.00 0.00 3.23 K jcn_only_AD exd chrX + chrX_15886650_15887504 chrX_15886695_15887504 chrX_15887505_15887806;chrX_15886529_15886649 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 99.40 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention pes chr2L - chr2L_7991620_7993840 chr2L_7991619_7991620;chr2L_7993840_7993841 chr2L_7991358_7991619;chr2L_7993841_7994308 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.67 0.31 1.28 0.00 0.76 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.51 0.00 0.00 1.22 0.88 0.00 0.71 0.00 1.90 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.63 0.00 0.00 0.00 0.00 0.33 0.00 1.46 1.33 0.00 0.00 0.00 1.35 0.00 0.00 K jcn_only_AD CG9855,RI_chr3R_222522_222581,RI_chr3R_222525_222604,I_chr3R_223384_223429 chr3R - chr3R_222525_222604 chr3R_222525_222581 chr3R_222457_222524;chr3R_222605_222650 100.00 98.33 100.00 98.90 100.00 97.73 100.00 100.00 99.01 100.00 100.00 100.00 97.50 100.00 98.41 98.53 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 94.34 100.00 98.77 100.00 99.03 100.00 100.00 98.75 97.85 98.61 97.87 100.00 98.59 98.46 100.00 98.37 100.00 98.26 100.00 100.00 100.00 100.00 97.78 99.40 98.96 100.00 100.00 98.11 98.65 100.00 100.00 98.78 100.00 98.73 K jcn_only_AD CG1399,I_chr2R_3574133_3574191 chr2R - chr2R_3565240_3565502;chr2R_3565240_3565323;chr2R_3565240_3565310;chr2R_3565240_3566074;chr2R_3565240_3565403 chr2R_3565240_3565374 chr2R_3564840_3565239 17.78 18.18 0.00 30.00 6.45 12.50 21.54 23.91 9.09 8.16 15.09 17.07 4.76 25.81 10.81 16.67 6.67 30.56 15.38 17.95 22.64 10.34 42.50 20.00 22.22 15.38 26.67 11.43 26.79 18.64 21.05 17.78 20.29 17.31 18.42 7.69 7.55 9.09 28.26 10.42 16.95 18.18 0.00 22.22 17.95 16.95 14.29 13.73 27.27 10.87 31.15 20.51 29.63 21.95 11.36 20.00 26.19 8.11 K jcn_only_AD vig chr2L - chr2L_15067690_15067915;chr2L_15067690_15067952;chr2L_15067690_15067995;chr2L_15067690_15067868;chr2L_15067690_15068029 chr2L_15067690_15067999 chr2L_15066937_15067689;chr2L_15068030_15068031 0.00 0.89 0.00 0.00 0.00 0.91 0.00 0.48 0.27 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.72 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 1.45 0.37 1.35 0.00 0.00 0.55 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 K cassette Fhos,CE_chr3L_8759730_8775647,I_chr3L_8779538_8779726 chr3L + chr3L_8759730_8775647 chr3L_8759730_8770096;chr3L_8770418_8775647 chr3L_8770097_8770417 chr3L_8759630_8759729;chr3L_8775648_8775747 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 92.00 95.45 100.00 100.00 100.00 100.00 94.12 90.91 94.74 83.33 87.50 94.44 100.00 100.00 100.00 100.00 100.00 94.74 95.83 100.00 90.91 100.00 95.65 94.74 100.00 100.00 92.11 100.00 85.71 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 K intron_retention CG17760 chr2R + chr2R_8513642_8514257 chr2R_8513641_8513642;chr2R_8514257_8514258 chr2R_8513634_8513641;chr2R_8514258_8514421 61.25 63.16 59.09 50.00 61.54 70.59 58.21 52.83 56.04 NA 78.95 51.22 80.95 52.94 55.56 61.40 60.00 80.00 66.67 55.26 76.47 40.00 76.47 63.16 81.82 64.29 71.43 NA NA NA 66.67 76.92 56.25 60.00 42.11 55.00 38.46 NA NA 78.26 38.46 53.06 38.10 43.75 69.23 55.00 42.86 83.33 64.52 62.50 62.50 61.11 NA 66.67 65.22 76.47 60.00 57.14 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2816013 chr2R_2813804_2814174;chr2R_2814327_2814894;chr2R_2815654_2816013 chr2R_2814175_2814326;chr2R_2814895_2815653 chr2R_2813704_2813803;chr2R_2816014_2816113 66.66 NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Cyp6u1,RI_chr2R_2860235_2860315,CG30157 chr2R - chr2R_2861506_2862451 chr2R_2861505_2861506;chr2R_2862451_2862452 chr2R_2861451_2861505;chr2R_2862452_2862496 18.35 NA NA 15.38 NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA NA 19.05 NA 16.67 28.57 16.67 NA NA NA NA NA NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA NA NA NA NA 17.65 NA NA NA NA NA NA NA K intron_retention dlg1,I_chrX_11298230_11299306 chrX + chrX_11290605_11291857 chrX_11290604_11290605;chrX_11291857_11291858 chrX_11289887_11290604;chrX_11291858_11291945 0.00 0.00 0.00 0.00 2.41 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 2.97 0.00 6.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG30109,CG30108,I_chr2R_13557316_13557647 chr2R + chr2R_13557138_13557647 chr2R_13557138_13557191 chr2R_13556976_13557137;chr2R_13557648_13557747 90.91 92.86 94.12 95.83 86.67 94.74 93.75 78.38 91.84 93.33 91.67 89.74 94.74 94.44 95.00 96.77 100.00 80.95 82.61 89.47 93.75 100.00 78.26 85.71 83.33 92.31 90.91 100.00 90.91 73.33 51.43 94.12 91.30 88.24 94.12 71.43 84.21 92.86 95.45 78.12 70.37 88.89 89.47 82.35 90.91 75.86 95.00 66.67 94.59 80.77 92.31 84.21 100.00 94.44 81.82 86.36 90.62 64.10 K intron_retention CG1600,I_chr2R_3415482_3418090 chr2R - chr2R_3414578_3414644 chr2R_3414577_3414578;chr2R_3414644_3414645 chr2R_3413623_3414577;chr2R_3414645_3415481 1.10 0.00 0.00 2.27 1.00 1.02 0.00 1.54 1.76 1.52 1.94 2.86 0.00 1.10 2.36 2.04 0.00 0.00 0.00 0.80 0.95 0.72 0.00 0.00 0.00 0.00 2.23 8.08 2.73 0.00 2.68 0.00 0.73 1.35 1.06 2.00 2.30 1.01 1.21 2.93 2.50 2.30 0.00 0.52 0.68 2.08 2.73 2.78 0.56 1.99 1.18 2.35 0.56 0.00 0.89 1.38 1.20 2.48 K cassette Oatp30B,I_chr2L_9521404_9523162,I_chr2L_9521441_9533513,RI_chr2L_9521477_9523162,I_chr2L_9533752_9534868 chr2L + chr2L_9521496_9533513;chr2L_9521441_9533513 chr2L_9521496_9523162,chr2L_9521441_9523162;chr2L_9523344_9533513 chr2L_9523163_9523343 chr2L_9521431_9521440;chr2L_9533514_9533613 100.00 NA 85.71 100.00 NA NA 100.00 90.00 100.00 NA NA 80.00 100.00 100.00 83.33 100.00 100.00 NA 100.00 85.71 NA 85.71 100.00 NA NA NA NA NA NA 100.00 NA NA 100.00 87.50 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA 91.67 100.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention I_chr2R_19265701_19270570,CG30414,CG3530,CG3520 chr2R - chr2R_19272571_19272635 chr2R_19272570_19272571;chr2R_19272635_19272636 chr2R_19272528_19272570;chr2R_19272636_19272922 9.52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA 4.76 0.00 K multi_cassette drpr,I_chr3L_1718097_1718705,I_chr3L_1718154_1723579,I_chr3L_1720385_1723579,CG18171 chr3L - chr3L_1718154_1723579 chr3L_1718154_1718705;chr3L_1719746_1719922;chr3L_1720170_1723579 chr3L_1718706_1719745;chr3L_1719923_1720169 chr3L_1718054_1718153;chr3L_1723580_1723679 99.72 99.69 100.00 99.38 99.63 100.00 99.31 99.36 99.53 100.00 99.47 99.72 98.47 99.56 100.00 99.48 100.00 99.62 99.61 100.00 100.00 98.88 99.71 100.00 99.46 99.63 99.56 100.00 99.55 99.62 99.36 100.00 100.00 99.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.85 100.00 100.00 99.55 99.57 99.57 99.26 99.81 100.00 98.80 99.25 100.00 100.00 100.00 100.00 99.63 99.46 K alternative_donor CG7028,I_chr3L_207277_208117 chr3L - chr3L_210400_210475 chr3L_210400_210453 chr3L_209784_210399;chr3L_210476_210738 56.39 64.00 65.00 84.00 56.25 77.78 70.00 64.00 60.53 50.00 NA 63.33 66.67 68.75 65.00 85.71 46.15 75.00 66.67 60.38 77.78 52.00 52.50 54.55 33.33 53.85 74.07 76.47 45.95 55.17 28.26 42.86 65.52 50.00 58.82 28.57 53.49 50.00 38.46 54.55 47.06 44.44 69.23 56.52 29.03 58.33 50.00 54.55 53.33 65.00 54.29 71.43 33.33 50.00 58.82 50.00 58.82 61.29 K alternative_last_exon Spargel,RI_chr3R_252723_254271,noncoding_14534 chr3R - chr3R_252723_254696 chr3R_254346_254696 chr3R_252604_252722 chr3R_254272_254345 chr3R_254697_254925 38.10 48.48 53.12 42.22 71.43 36.84 34.88 39.66 36.84 36.36 69.57 38.33 53.33 41.94 32.35 33.96 39.13 46.88 50.00 80.33 65.00 25.64 37.50 36.96 36.84 27.59 30.23 39.02 33.33 27.78 44.44 18.18 32.61 42.47 52.94 21.88 43.90 36.67 40.00 41.86 33.33 38.46 51.52 27.03 53.33 34.78 21.43 34.04 38.36 40.91 32.56 46.67 28.57 25.00 52.17 38.10 20.00 26.47 K intron_retention Vha100-1,I_chr3R_24958227_24960770,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24959684_24960278 chr3R_24959683_24959684;chr3R_24960278_24960279 chr3R_24959583_24959683;chr3R_24960279_24960320 31.01 NA NA 31.25 NA NA 42.11 NA 30.00 NA NA 12.70 NA NA 16.67 NA NA NA NA 50.00 35.71 66.67 23.08 30.77 50.00 NA NA NA NA NA 33.33 NA NA 40.00 NA 26.32 22.22 NA 19.05 NA NA 35.29 NA NA NA 46.15 NA NA 27.27 30.77 30.00 60.00 NA NA 30.77 NA 33.33 NA K alternative_acceptor CG32344,RI_chr3L_321550_321914,I_chr3L_326540_326703,RI_chr3L_326725_326866 chr3L - chr3L_321364_321914;chr3L_321550_321914 chr3L_321361_321914 chr3L_321915_322014;chr3L_321242_321360 7.14 0.00 8.33 5.56 0.00 12.50 0.00 5.56 5.00 NA 0.00 8.00 7.69 7.69 5.26 13.04 NA 11.11 7.14 5.26 0.00 12.50 9.09 6.67 NA 8.33 7.69 12.50 14.29 14.29 7.69 9.09 5.88 10.00 16.67 0.00 11.11 0.00 30.00 7.14 5.26 9.52 0.00 NA 5.56 6.67 8.33 6.25 4.76 0.00 6.25 12.50 7.14 0.00 6.67 11.11 3.70 8.57 K intron_retention CG13163,RI_chr2R_8209160_8209216 chr2R + chr2R_8209156_8209216 chr2R_8209155_8209156;chr2R_8209216_8209217 chr2R_8209060_8209155;chr2R_8209217_8209316 0.00 NA NA 0.00 NA NA 0.00 0.00 3.12 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA 9.52 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 NA K intron_retention klett chrX - chrX_21499782_21499946 chrX_21499781_21499782;chrX_21499946_21499947 chrX_21499389_21499781;chrX_21499947_21499978 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 97.44 91.67 100.00 100.00 94.12 89.66 96.67 96.15 100.00 100.00 95.24 100.00 100.00 100.00 100.00 97.30 100.00 100.00 97.22 100.00 100.00 100.00 100.00 96.15 100.00 96.67 100.00 100.00 K jcn_only_AD CG32803,I_chrX_1795648_1795700,RI_chrX_1795648_1795745,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1795648_1795832 chrX_1795648_1795745 chrX_1795548_1795647;chrX_1795833_1795845 9.18 8.70 6.74 11.48 5.56 10.94 11.65 6.90 4.26 10.87 7.04 8.51 7.94 7.69 12.66 5.83 6.25 23.26 13.79 6.72 8.11 4.48 7.96 9.18 9.68 19.12 15.09 7.14 37.50 20.00 5.79 15.52 17.39 5.56 10.20 8.93 6.02 11.11 4.20 9.52 13.11 11.20 13.04 10.23 10.47 6.67 7.23 21.31 12.40 7.89 10.91 7.94 6.06 8.11 10.75 5.98 10.62 10.71 K intron_retention Sr-CI chr2L + chr2L_4121980_4122045 chr2L_4121979_4121980;chr2L_4122045_4122046 chr2L_4121619_4121979;chr2L_4122046_4122583 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pvf2 chr2L - chr2L_7070947_7074253 chr2L_7070946_7070947;chr2L_7074253_7074254 chr2L_7070421_7070946;chr2L_7074254_7074356 0.00 0.00 0.72 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 1.32 2.17 0.00 0.00 0.00 0.00 1.80 0.64 0.00 0.00 0.00 0.54 1.24 0.00 0.00 2.28 2.29 0.00 0.00 0.52 0.00 0.00 0.44 1.10 1.43 0.58 0.00 1.36 0.73 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.78 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor RI_chr2R_12650846_12659758,Sod2 chr2R - chr2R_12661312_12661368 chr2R_12661315_12661368 chr2R_12661369_12661392;chr2R_12661260_12661311 100.00 98.28 97.44 98.61 97.67 97.37 100.00 98.57 97.20 96.55 94.74 98.88 97.83 100.00 100.00 100.00 98.00 93.55 100.00 96.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 98.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.34 100.00 100.00 100.00 100.00 98.51 93.55 95.95 97.83 100.00 97.44 100.00 98.11 96.08 100.00 98.89 98.00 K jcn_only_AD CG31140,F_chr3R_19799277_19802225 chr3R + chr3R_19803838_19804671 chr3R_19803934_19804671 chr3R_19804672_19804957;chr3R_19803658_19803837 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD pgant3,I_chr2R_2947729_2947783 chr2R - chr2R_2947729_2947787 chr2R_2947729_2947783 chr2R_2947629_2947728;chr2R_2947788_2947883 0.00 0.98 0.00 0.00 0.00 1.15 0.99 0.00 0.61 0.00 0.00 1.10 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.58 0.00 0.62 0.79 0.00 1.28 1.28 3.75 0.00 0.00 0.00 0.99 0.00 1.27 0.00 0.00 0.00 2.29 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14133 chr3L - chr3L_11683209_11683325 chr3L_11683208_11683209;chr3L_11683325_11683326 chr3L_11682731_11683208;chr3L_11683326_11683412 41.89 30.77 53.85 73.33 58.33 35.71 42.86 28.57 54.05 NA 53.33 50.00 NA NA 88.89 40.00 NA NA 36.36 58.62 35.71 NA NA NA NA NA NA NA NA 41.67 35.29 NA 46.15 42.11 NA NA 50.00 45.45 72.73 35.71 NA 56.67 NA 25.00 58.33 35.71 35.71 NA 52.63 38.46 40.00 NA 13.33 NA 53.33 40.00 26.09 29.17 K jcn_only_AD twin,RI_chr3R_20032242_20045321 chr3R - chr3R_20046286_20047530;chr3R_20046286_20047526 chr3R_20046286_20047514 chr3R_20046254_20046285;chr3R_20047531_20047647 100.00 NA NA NA NA NA NA 96.30 NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 96.88 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 96.67 NA NA NA NA NA NA NA NA NA K intron_retention CG3420 chr2R - chr2R_2644142_2644217 chr2R_2644141_2644142;chr2R_2644217_2644218 chr2R_2644048_2644141;chr2R_2644218_2644362 0.00 0.00 0.00 1.59 0.00 0.00 0.00 2.60 2.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.91 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 1.00 0.00 K intron_retention CG5382,CG5380 chr3R - chr3R_18191192_18191258 chr3R_18191191_18191192;chr3R_18191258_18191259 chr3R_18190998_18191191;chr3R_18191259_18191370 1.71 1.19 1.41 3.12 0.00 4.17 2.50 1.16 0.75 0.00 0.00 0.00 0.00 0.00 0.00 3.17 0.00 0.00 0.00 0.00 0.00 4.76 3.31 3.17 2.35 3.70 3.81 4.00 6.45 2.74 0.00 2.27 1.06 0.00 2.90 13.11 2.67 3.41 1.71 5.45 3.57 2.50 0.00 1.10 1.85 2.33 3.00 3.92 0.00 0.00 5.08 0.00 0.00 0.94 0.00 0.00 2.47 2.74 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2388436;chrX_2388671_2389073;chrX_2389272_2395659 chrX_2388437_2388670;chrX_2389074_2389271 chrX_2387149_2387248;chrX_2395660_2395759 0.00 1.92 0.00 0.00 0.00 0.00 0.00 1.48 1.74 0.00 0.00 7.29 0.00 1.72 0.00 1.54 0.00 0.00 2.41 2.91 0.00 2.27 1.12 2.27 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 2.22 0.00 1.25 3.85 6.25 2.86 0.00 6.58 7.14 0.00 NA 2.29 1.12 0.00 0.00 0.00 0.00 NA 2.02 0.00 0.00 4.00 K intron_retention CG10576,snoRNA:684,I_chr3L_5756877_5757511,I_chr3L_5758117_5758186 chr3L - chr3L_5756374_5756654 chr3L_5756373_5756374;chr3L_5756654_5756655 chr3L_5756148_5756373;chr3L_5756655_5756876 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD vlc chr2R + chr2R_1589953_1590371;chr2R_1589894_1590371;chr2R_1589799_1590371;chr2R_1589805_1590371;chr2R_1590318_1590371;chr2R_1590294_1590371;chr2R_1589722_1590371;chr2R_1589693_1590371 chr2R_1589807_1590371 chr2R_1590372_1590451;chr2R_1589612_1589692 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 K intron_retention CG3566 chrX - chrX_6170492_6170564 chrX_6170491_6170492;chrX_6170564_6170565 chrX_6170403_6170491;chrX_6170565_6170760 4.91 6.42 3.77 7.69 2.00 2.25 10.17 3.23 4.61 9.84 0.00 5.21 5.00 2.60 1.64 5.61 6.56 8.64 0.00 3.21 3.85 30.56 4.38 8.55 4.48 16.33 12.36 14.81 28.99 6.03 20.11 5.56 3.75 5.79 5.10 9.09 7.30 4.44 4.60 6.06 10.34 5.39 1.54 4.35 4.57 4.91 3.39 7.83 2.76 1.89 5.11 10.91 2.30 3.63 0.87 2.27 2.87 4.82 N alternative_donor Rip11,RI_chrX_18530353_18530870,RI_chrX_18544139_18544185 chrX - chrX_18534444_18541222 chrX_18534444_18534510 chrX_18534299_18534443;chrX_18541223_18541623 0.72 0.74 0.61 0.72 0.70 0.72 1.06 0.75 0.79 0.47 0.57 1.00 0.87 1.02 0.73 0.98 0.94 0.72 0.81 0.83 0.59 0.80 0.91 0.91 1.03 0.57 0.89 2.27 0.66 0.58 0.55 0.37 0.60 0.81 0.99 0.73 0.58 0.54 0.46 0.82 0.47 0.82 0.66 0.71 0.30 0.50 0.57 0.70 0.82 0.51 0.92 1.00 0.49 0.31 0.76 0.41 0.35 0.47 K alternative_donor sop,RI_chr2L_9897132_9897211 chr2L - chr2L_9897132_9897472 chr2L_9897132_9897211 chr2L_9897032_9897131;chr2L_9897473_9897825 3.80 1.03 0.38 5.19 0.66 0.86 8.49 0.52 1.81 5.56 6.76 1.08 4.21 1.53 1.49 1.22 3.33 5.56 2.83 0.61 3.37 2.94 5.88 4.48 4.88 2.11 16.13 15.56 26.67 27.27 11.11 NA 3.85 3.75 6.67 30.77 1.83 6.45 2.80 6.56 9.09 0.83 1.94 16.67 0.17 5.41 2.78 3.33 2.64 7.02 41.67 8.57 0.96 7.32 0.76 9.76 9.09 2.50 K jcn_only_AA Nnf1b,I_chr2L_810759_810816,KH1 chr2L + chr2L_810759_810816 chr2L_810759_810808 chr2L_810691_810758;chr2L_810817_810876 96.37 100.00 96.00 100.00 93.10 100.00 93.59 94.05 97.87 NA 100.00 97.17 96.67 98.04 96.43 95.88 97.22 97.14 95.12 95.24 100.00 NA 96.30 96.88 100.00 96.77 95.56 100.00 96.00 NA 80.36 96.30 90.91 100.00 100.00 96.30 90.91 95.00 98.28 96.00 96.77 97.53 93.10 96.88 92.86 93.62 94.44 85.71 98.90 93.62 98.46 94.12 95.45 94.74 100.00 97.73 97.26 90.91 K jcn_only_AA eIF5,RI_chrX_15883163_15883424,I_chrX_15883297_15883424,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15883360_15883424;chrX_15883163_15883424;chrX_15883143_15883424 chrX_15883302_15883424 chrX_15883425_15883509;chrX_15883079_15883142 86.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 86.36 K cassette Atpalpha,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16792336_16798894;chr3R_16792925_16798894 chr3R_16792925_16794113,chr3R_16792336_16794113;chr3R_16794209_16798894 chr3R_16794114_16794208 chr3R_16792236_16792335;chr3R_16798895_16798994 0.44 0.76 0.31 0.20 0.26 0.00 0.44 0.36 0.31 0.00 0.36 0.39 1.49 0.65 0.58 0.26 0.31 1.32 0.30 0.46 0.00 0.62 0.20 0.41 0.45 1.03 0.51 4.72 1.21 0.41 0.00 1.43 0.95 0.60 0.82 1.04 0.29 0.25 0.88 1.38 0.51 0.28 0.36 0.54 0.46 0.38 0.35 0.61 0.51 0.20 0.44 0.61 0.52 0.39 0.23 0.24 0.27 0.75 K jcn_only_AA pAbp,I_chr2R_14027838_14028996 chr2R + chr2R_14028460_14028996 chr2R_14028460_14028992 chr2R_14028264_14028459;chr2R_14028997_14029096 95.04 95.88 94.67 94.31 95.56 95.77 95.08 92.37 95.81 96.15 96.97 95.71 97.44 95.79 98.39 95.15 91.80 98.08 92.96 91.59 97.06 92.77 91.84 NA NA 93.33 81.36 87.50 85.00 92.16 95.65 92.31 87.32 96.08 86.27 95.00 92.68 98.61 79.41 91.30 93.33 95.68 93.62 91.97 NA 97.56 100.00 89.47 96.43 96.97 95.00 100.00 96.67 88.46 89.87 100.00 95.24 95.24 K intron_retention lic,CG2200 chrX + chrX_12985575_12985644 chrX_12985574_12985575;chrX_12985644_12985645 chrX_12985093_12985574;chrX_12985645_12986035 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor None chrU - chrU_5771599_5771833;chrU_5771599_5771693 chrU_5771599_5771684 61.85 61.85 67.42 61.90 60.40 64.17 60.94 55.29 63.56 59.52 63.75 60.68 70.00 59.80 69.86 62.24 65.93 63.21 69.16 63.67 60.26 60.34 63.47 58.56 58.68 61.46 60.42 59.15 55.87 58.82 65.19 56.73 54.55 62.50 60.16 48.94 63.29 60.14 61.97 60.89 63.39 62.40 63.54 61.47 63.24 60.95 60.10 63.55 62.05 62.15 62.24 58.49 62.07 59.66 62.68 60.19 60.73 63.66 K jcn_only_AD CG6608,I_chr3R_6706829_6707624 chr3R - chr3R_6706829_6707624 chr3R_6706829_6707284 chr3R_6706729_6706828;chr3R_6707625_6707724 99.24 98.44 100.00 100.00 100.00 97.62 98.70 100.00 99.41 100.00 96.05 96.61 96.67 100.00 98.15 100.00 100.00 100.00 97.44 98.99 100.00 99.24 99.30 98.95 100.00 98.65 97.87 99.22 99.55 100.00 100.00 99.36 99.69 100.00 98.91 100.00 97.75 98.59 97.14 100.00 100.00 99.24 100.00 98.59 100.00 98.82 98.84 100.00 99.00 97.10 98.13 98.41 100.00 98.67 98.67 98.55 98.11 100.00 K intron_retention None chrU + chrU_1184302_1184352 chrU_1184301_1184302;chrU_1184352_1184353 1.03 0.00 0.00 8.93 1.19 1.92 1.89 1.37 1.59 0.00 0.00 3.20 3.76 2.42 0.73 1.27 0.00 0.00 0.00 2.02 0.00 0.00 0.00 1.59 0.00 2.25 6.73 0.00 0.00 0.00 1.53 0.00 2.60 0.46 0.00 3.49 2.74 0.00 2.63 2.05 0.00 0.87 1.60 1.32 0.00 1.14 0.60 1.03 0.65 3.12 0.00 0.00 1.61 1.37 0.00 0.00 2.31 1.03 K intron_retention CG7185 chr3L - chr3L_8304816_8304873 chr3L_8304815_8304816;chr3L_8304873_8304874 chr3L_8304747_8304815;chr3L_8304874_8305173 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 K alternative_donor drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9390151;chr2R_9389597_9389907;chr2R_9389597_9389940;chr2R_9389597_9390293;chr2R_9389597_9389751;chr2R_9389597_9390264;chr2R_9389597_9389753;chr2R_9389597_9389757 chr2R_9389597_9390195 chr2R_9389497_9389596;chr2R_9390294_9390295 57.14 68.42 51.22 55.93 37.50 46.67 57.41 43.55 44.58 73.33 50.00 43.33 50.00 48.15 60.00 55.77 50.00 57.14 53.85 39.22 48.39 47.83 60.00 58.33 47.83 54.05 66.67 73.33 62.50 83.33 52.50 46.67 41.67 54.10 72.22 80.77 71.43 61.54 56.52 60.53 44.44 46.58 57.89 72.22 57.14 61.11 84.21 32.00 48.48 81.25 76.19 58.33 66.67 93.33 43.59 76.47 78.12 62.50 K jcn_only_AD CG10681 chr3L + chr3L_12494819_12494874 chr3L_12494823_12494874 chr3L_12494875_12495047;chr3L_12494613_12494818 11.09 NA NA 9.68 NA NA 14.81 14.29 NA NA NA 3.03 NA NA NA 17.24 NA NA NA 21.74 NA NA NA NA NA NA NA NA NA NA NA NA NA 17.24 NA NA NA NA NA 12.50 NA 0.00 NA NA NA NA NA NA 6.67 0.00 0.00 NA NA NA NA NA NA NA K intron_retention CG5594,CG2812 chr2R + chr2R_19796155_19797200 chr2R_19796154_19796155;chr2R_19797200_19797201 chr2R_19796020_19796154;chr2R_19797201_19797332 1.81 0.00 0.00 1.81 0.00 0.00 1.79 2.84 1.33 0.00 0.00 2.97 2.13 1.89 0.87 1.54 2.44 2.11 2.04 1.61 2.33 7.46 0.00 0.96 2.60 1.23 2.04 0.00 1.82 0.00 1.94 2.86 1.75 1.15 1.19 1.27 1.53 0.00 1.94 3.68 3.64 1.38 0.00 0.00 3.37 2.80 2.44 2.20 1.72 4.48 0.00 2.53 5.36 2.13 2.04 2.53 3.33 1.56 K intron_retention blow,RI_chr2R_3470434_3470776 chr2R - chr2R_3472863_3474436 chr2R_3472862_3472863;chr2R_3474436_3474437 chr2R_3472561_3472862;chr2R_3474437_3474581 9.33 2.56 4.17 11.86 0.00 5.56 14.00 8.82 7.77 20.83 10.53 8.86 14.81 7.69 10.71 8.64 5.88 22.50 11.36 6.96 11.63 28.05 8.82 16.67 15.15 12.70 25.00 17.24 21.25 9.26 6.49 10.26 13.51 9.33 4.84 8.47 10.71 13.51 3.45 8.51 13.73 13.83 6.45 3.17 7.69 10.00 8.93 11.76 9.78 15.22 12.90 7.69 12.50 6.45 5.06 8.89 6.35 6.38 K intron_retention SP2637,Gint3 chr2R - chr2R_14530268_14545580 chr2R_14530267_14530268;chr2R_14545580_14545581 chr2R_14529910_14530267;chr2R_14545581_14545707 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27044867 chr3R_27044770_27044771;chr3R_27044867_27044868 chr3R_27044671_27044770;chr3R_27044868_27044967 100.00 NA NA NA NA NA 100.00 88.89 100.00 NA NA 100.00 NA NA NA 88.89 NA NA 100.00 91.67 NA NA NA 100.00 NA NA NA NA 100.00 NA NA NA 87.50 NA NA NA NA NA NA 100.00 NA 90.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA 88.89 100.00 NA NA K intron_retention CG31224 chr3R - chr3R_14482908_14484481 chr3R_14482907_14482908;chr3R_14484481_14484482 chr3R_14481887_14482907;chr3R_14484482_14485019 30.77 NA 30.77 NA NA NA 66.67 NA 30.77 NA NA 30.77 NA NA NA 70.00 NA NA NA 35.71 NA 81.82 22.22 NA 14.29 NA 53.33 NA NA NA NA NA NA 43.75 NA 12.50 NA NA NA 16.67 NA 23.08 NA NA NA NA NA 33.33 46.15 NA 25.00 NA NA NA 30.77 NA NA NA K cassette I_chrX_7993650_7995126,Gclc chrX - chrX_7999928_8010024 chrX_7999928_8009449;chrX_8009614_8010024 chrX_8009450_8009613 chrX_7999301_7999927;chrX_8010025_8010150 99.37 98.85 100.00 99.26 100.00 100.00 100.00 99.33 99.62 98.36 98.61 99.45 100.00 99.07 98.94 99.37 100.00 100.00 99.14 99.05 100.00 99.09 99.53 99.18 99.02 98.88 99.38 99.33 96.69 99.36 99.49 100.00 100.00 100.00 100.00 99.30 98.25 100.00 98.92 98.94 99.03 99.44 100.00 98.57 98.21 99.11 98.53 99.41 100.00 98.72 99.39 98.94 100.00 100.00 100.00 100.00 98.68 100.00 K intron_retention Shawn_Tyler,Shawn chrX + chrX_19509139_19509216 chrX_19509138_19509139;chrX_19509216_19509217 chrX_19509057_19509138;chrX_19509217_19509641 50.00 43.33 39.39 62.96 57.14 70.00 63.16 39.39 52.17 59.09 66.67 67.44 47.06 50.00 50.00 55.56 63.16 50.00 45.45 55.32 61.11 29.63 60.00 44.07 55.26 65.00 50.98 60.78 62.07 45.45 55.00 50.00 41.67 55.56 66.67 73.08 43.40 40.48 50.00 46.15 53.85 47.62 44.44 40.48 38.64 43.64 50.00 56.52 49.02 51.79 51.22 39.29 47.50 50.00 37.04 30.36 54.39 42.11 K intron_retention crol,I_chr2L_11799403_11802904 chr2L - chr2L_11799403_11802370 chr2L_11799402_11799403;chr2L_11802370_11802371 chr2L_11799303_11799402;chr2L_11802371_11802412 100.00 98.11 100.00 98.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522912_523389 chrX_522911_522912;chrX_523389_523390 chrX_522849_522911;chrX_523390_523412 90.91 93.75 87.50 90.91 90.91 91.67 97.14 86.21 92.00 94.12 NA 96.15 95.00 85.71 90.91 79.17 90.91 100.00 NA 84.51 NA 92.68 100.00 95.45 97.56 100.00 93.33 88.24 70.83 90.91 88.89 88.00 77.78 71.43 90.00 76.92 93.33 93.75 100.00 87.50 77.14 88.89 100.00 90.00 80.95 75.86 94.44 60.87 91.30 83.33 88.24 94.12 84.00 93.75 56.25 100.00 89.66 77.78 K alternative_donor CG5938,EI_chr3R_23100734_23100898,RI_chr3R_23101686_23102014 chr3R + chr3R_23100711_23101112 chr3R_23100734_23101112 chr3R_23101113_23101275;chr3R_23100634_23100710 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG2950,I_chr2L_4844647_4845086,I_chr2L_4844952_4845086 chr2L - chr2L_4844773_4845086 chr2L_4844772_4844773;chr2L_4845086_4845087 chr2L_4844712_4844772;chr2L_4845087_4845158 1.59 2.13 0.00 1.08 0.00 2.27 6.56 1.30 4.12 0.00 0.00 2.33 8.11 0.00 0.00 4.92 2.94 0.00 0.00 1.10 0.00 2.41 0.00 4.44 5.71 5.26 5.97 10.00 6.12 0.00 1.59 0.00 0.00 4.88 3.85 1.92 0.00 2.04 0.00 3.85 3.92 6.82 0.00 4.17 0.00 0.00 0.00 1.67 2.60 2.70 0.00 5.71 0.00 0.00 7.41 0.00 0.00 0.00 K alternative_acceptor sda,I_chr3R_22742285_22742350,RI_chr3R_22750984_22752737 chr3R + chr3R_22742285_22750355 chr3R_22742285_22742350 chr3R_22742270_22742284;chr3R_22750356_22750983 0.86 0.00 0.00 4.35 0.00 4.35 5.56 3.45 4.08 0.00 0.00 3.85 0.00 4.55 5.00 4.35 6.25 0.00 4.00 4.35 0.00 2.50 1.72 0.00 0.00 0.00 2.94 3.57 10.00 0.00 4.76 0.00 0.00 2.56 5.00 0.00 0.00 0.00 0.00 2.44 0.00 2.94 5.00 2.27 0.00 0.00 0.00 4.35 3.33 0.00 2.94 0.00 0.00 NA 4.35 0.00 0.00 0.00 K jcn_only_AD endos,I_chr3L_14024099_14024488,I_chr3L_14024103_14024158,I_chr3L_14024103_14024546,noncoding_12505,I_chr3L_14024496_14024546 chr3L - chr3L_14024103_14024488;chr3L_14024103_14024158;chr3L_14024103_14024407 chr3L_14024103_14024546 chr3L_14024003_14024102;chr3L_14024547_14024588 2.88 3.29 2.70 0.87 3.03 0.75 3.95 0.84 2.96 3.82 2.13 0.93 2.94 2.14 0.47 3.55 1.99 1.28 1.67 2.70 0.65 6.78 10.64 8.11 3.95 0.00 1.07 3.31 2.22 3.08 0.00 2.40 11.56 3.21 2.75 1.02 5.30 7.55 4.73 4.00 1.46 2.95 2.88 1.64 2.59 2.99 3.25 2.38 1.75 7.32 2.46 0.00 3.00 7.48 0.57 4.03 5.10 3.83 K alternative_acceptor CG8116,I_chr3R_4542126_4542214,RI_chr3R_4542291_4542625,RI_chr3R_4542291_4542652,I_chr3R_4542561_4542617,I_chr3R_4545118_4545525 chr3R + chr3R_4542291_4542622;chr3R_4542291_4542625 chr3R_4542291_4542617 chr3R_4542215_4542290;chr3R_4542626_4542717 75.00 NA 80.00 70.00 66.67 NA 90.91 75.00 68.75 87.50 66.67 88.89 80.00 NA 100.00 83.33 66.67 66.67 83.33 64.71 71.43 78.26 75.00 75.00 NA NA 57.14 78.95 77.27 75.00 83.33 71.43 83.33 66.67 50.00 75.00 77.78 NA 62.50 64.00 66.67 71.43 NA 75.00 70.00 76.47 60.00 71.43 66.67 75.00 77.78 NA 83.33 NA 57.14 NA NA 70.00 K intron_retention EI_chr2L_13164741_13164824,Sfmbt chr2L - chr2L_13173942_13174438 chr2L_13173941_13173942;chr2L_13174438_13174439 chr2L_13172643_13173941;chr2L_13174439_13175276 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.66 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 3.17 0.00 0.00 0.00 3.51 0.00 0.00 4.55 2.70 0.00 0.00 9.09 0.00 0.00 4.17 2.50 0.00 2.44 0.00 1.45 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 7.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585739_2586036 chr3L_2585738_2585739;chr3L_2586036_2586037 chr3L_2585639_2585738;chr3L_2586037_2586103 53.85 NA 41.67 43.75 NA 50.00 34.48 55.56 51.85 NA NA 47.62 75.00 42.86 50.00 60.87 53.85 46.67 68.75 68.42 41.67 81.82 47.06 50.00 60.00 35.71 53.85 NA 58.62 NA 61.54 NA 63.64 41.38 NA NA 27.27 NA NA 37.93 57.14 60.00 60.00 25.00 NA 46.15 NA 54.05 57.14 NA 66.67 63.64 NA NA 54.55 NA NA NA K intron_retention Or43b,Kdm4A chr2R - chr2R_3808557_3808619 chr2R_3808556_3808557;chr2R_3808619_3808620 chr2R_3808509_3808556;chr2R_3808620_3808977 90.91 88.24 92.86 94.59 100.00 90.91 100.00 89.66 92.31 75.00 87.50 85.19 81.82 92.31 93.75 92.31 100.00 100.00 94.12 91.67 94.44 93.10 84.62 64.00 94.12 100.00 84.62 86.96 92.31 85.71 87.50 94.44 90.48 90.91 83.33 94.44 76.47 77.78 95.65 79.31 94.44 96.77 92.86 85.19 76.47 80.00 67.65 92.86 91.43 86.67 71.43 93.75 76.47 77.78 94.44 66.67 80.65 81.82 K jcn_only_AD I_chr2L_8213024_8213227,CG8360 chr2L + chr2L_8213261_8213336 chr2L_8213283_8213336 chr2L_8213337_8213402;chr2L_8213228_8213260 91.14 88.64 95.59 86.79 96.15 93.65 93.83 90.32 98.08 92.00 94.44 91.67 97.44 98.21 91.18 88.06 92.31 95.31 100.00 93.44 90.70 91.09 83.05 82.76 96.77 100.00 82.86 NA 92.45 72.22 70.91 83.33 80.00 93.75 89.58 80.00 87.67 87.10 90.20 81.94 88.46 98.84 94.44 87.23 90.00 90.91 94.12 84.00 94.74 88.89 87.64 87.93 92.31 91.53 98.59 91.86 89.42 92.96 K alternative_acceptor Eb1,I_chr2R_2640494_2642206,I_chr2R_2642491_2642549 chr2R + chr2R_2636895_2640136 chr2R_2636895_2640115 chr2R_2636790_2636894;chr2R_2640137_2640289 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.29 0.26 0.00 0.52 0.00 0.58 0.00 0.30 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.66 0.31 0.00 0.00 0.14 0.00 0.00 0.30 0.00 0.29 0.00 0.00 0.00 0.30 0.00 K intron_retention CG42574,I_chr3R_618802_618939,I_chr3R_621546_625413 chr3R - chr3R_614010_614095 chr3R_614009_614010;chr3R_614095_614096 chr3R_613320_614009;chr3R_614096_614297 0.00 0.00 1.69 0.00 0.00 0.00 1.53 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.56 1.04 0.00 0.00 0.00 1.42 2.61 0.00 0.00 0.00 0.00 0.00 0.00 1.47 1.89 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 1.89 0.00 0.00 0.00 0.00 K jcn_only_AD CG32425,I_chr3L_20490581_20505036,CG18281,CG17637,CG5078,I_chr3L_20502617_20503129,I_chr3L_20504930_20505036 chr3L + chr3L_20490526_20503129 chr3L_20491565_20503129 chr3L_20503130_20503229;chr3L_20490481_20490525 100.00 100.00 NA NA NA NA NA NA 96.55 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 100.00 95.24 NA 90.48 NA NA NA NA NA NA NA NA NA 100.00 89.66 100.00 96.88 NA 100.00 NA NA 100.00 NA NA 100.00 100.00 NA 97.06 NA 95.00 NA NA NA NA NA K intron_retention SrpRbeta,CG32022,I_chr3L_8714134_8714220 chr3L - chr3L_8714006_8714060 chr3L_8714005_8714006;chr3L_8714060_8714061 chr3L_8713362_8714005;chr3L_8714061_8714133 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046104;chr3L_16045251_16046108;chr3L_16045251_16045854;chr3L_16045251_16046111 chr3L_16045251_16046129 chr3L_16045216_16045250;chr3L_16046130_16046204 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AA Crk,RI_chr4_231302_233315,I_chr4_231307_232253 chr4 + chr4_233356_233449 chr4_233356_233416 chr4_233316_233355;chr4_233450_233734 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.16 NA 100.00 100.00 100.00 100.00 100.00 99.05 100.00 98.25 100.00 100.00 97.67 100.00 97.67 100.00 100.00 100.00 100.00 NA 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 98.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD bowl,RI_chr2L_3772695_3773616 chr2L + chr2L_3771785_3772460;chr2L_3771755_3772460 chr2L_3771874_3772460 chr2L_3772461_3772694;chr2L_3771707_3771754 10.71 NA NA NA NA NA 20.83 22.73 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.76 NA NA NA K cassette cwo,noncoding_15870 chr3R + chr3R_6215160_6223084 chr3R_6215160_6222418;chr3R_6222543_6223084 chr3R_6222419_6222542 chr3R_6214846_6215159;chr3R_6223085_6223406 77.78 65.00 94.44 96.30 83.33 92.86 37.14 80.65 75.00 84.00 68.18 67.74 71.43 78.57 94.74 76.67 87.50 70.59 87.50 79.41 78.57 74.55 82.50 83.87 64.00 73.68 75.00 83.33 66.67 80.56 81.25 86.67 86.27 88.89 73.08 70.97 80.00 75.86 70.00 82.35 80.00 71.79 73.33 71.43 83.33 65.22 80.00 73.91 76.47 90.32 84.85 86.36 72.22 69.23 69.57 77.78 75.00 76.32 K intron_retention CG31064,RI_chr3R_23056388_23064246,I_chr3R_23069667_23070365 chr3R - chr3R_23058908_23058969 chr3R_23058907_23058908;chr3R_23058969_23058970 chr3R_23058657_23058907;chr3R_23058970_23059403 0.00 0.00 0.00 16.67 0.00 0.00 0.00 5.80 0.00 0.00 0.00 1.67 3.57 0.00 0.00 0.00 2.86 0.00 0.00 1.22 0.00 7.32 0.00 5.88 0.00 0.00 1.85 0.00 0.00 0.00 0.00 3.45 2.86 0.00 0.00 0.00 0.00 2.70 1.61 0.00 3.70 1.18 0.00 1.75 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG31038,I_chr3R_25702915_25703648,I_chr3R_25705533_25722419,I_chr3R_25727788_25727905 chr3R + chr3R_25702915_25703648;chr3R_25702895_25703648;chr3R_25702897_25703648;chr3R_25702901_25703648;chr3R_25702838_25703648;chr3R_25702970_25703648 chr3R_25702989_25703648 chr3R_25703649_25703748;chr3R_25702831_25702837 25.00 28.57 27.27 33.33 NA 25.00 11.11 33.33 25.00 33.33 NA 16.67 40.00 28.57 42.86 15.38 NA 25.00 50.00 13.79 50.00 26.32 16.67 15.38 27.27 28.57 40.00 28.57 40.00 50.00 18.75 50.00 15.38 23.08 25.00 18.18 20.00 22.22 21.43 16.67 100.00 26.67 NA 27.27 33.33 25.00 10.00 33.33 23.08 22.22 18.18 11.11 20.00 14.29 33.33 22.22 25.00 25.00 K jcn_only_AA Galpha49B,I_chr2R_8501587_8501648,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500357_8501648;chr2R_8500357_8501071 chr2R_8500357_8501759 chr2R_8500333_8500356;chr2R_8501760_8501850 4.88 NA NA NA NA NA 5.00 6.90 5.56 NA NA 2.27 4.35 4.76 NA 7.41 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.11 NA NA NA NA NA NA NA NA NA K cassette GlcAT-P,I_chr3L_11172482_11172633 chr3L - chr3L_11172817_11176733 chr3L_11172817_11175254;chr3L_11175744_11176733 chr3L_11175255_11175743 chr3L_11172634_11172816;chr3L_11176734_11177238 26.90 18.02 24.00 39.66 8.86 7.69 13.43 31.30 23.70 28.89 10.75 52.98 10.96 38.71 30.00 41.03 21.33 24.05 30.38 33.97 15.38 30.28 26.83 23.96 29.51 44.62 22.47 17.39 25.93 20.21 33.85 32.14 29.69 28.35 30.77 65.52 20.71 19.10 22.41 31.39 33.33 30.00 32.00 37.31 31.58 38.16 18.87 34.38 26.90 17.65 18.87 30.36 22.62 17.65 32.29 21.13 17.35 23.85 K alternative_donor l(3)82Fd,I_chr3R_1125296_1161435,I_chr3R_1125296_1175189,I_chr3R_1129905_1160126,I_chr3R_1140028_1160126,I_chr3R_1147660_1148709 chr3R - chr3R_1148848_1149160;chr3R_1148848_1149460;chr3R_1148848_1149413 chr3R_1148848_1149386 chr3R_1148710_1148847;chr3R_1149461_1149489 40.00 NA NA 66.67 NA NA 20.00 40.00 25.00 NA NA 60.00 NA NA NA 28.57 NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Prosalpha5,RI_chr2R_13310877_13311160 chr2R + chr2R_13300549_13300606 chr2R_13300548_13300549;chr2R_13300606_13300607 chr2R_13300410_13300548;chr2R_13300607_13301334 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 K jcn_only_AD CG1832,I_chr2L_22168644_22168740 chr2L - chr2L_22168644_22168887 chr2L_22168644_22168740 chr2L_22168544_22168643;chr2L_22168888_22169038 1.75 1.59 0.00 5.13 2.00 0.00 2.56 0.81 2.66 3.85 0.00 3.31 3.45 0.00 2.50 2.38 1.39 2.82 5.00 2.74 0.00 1.79 2.50 0.00 1.72 2.67 1.49 0.00 2.27 4.17 1.22 3.92 0.83 3.10 1.45 5.00 0.00 0.00 2.27 0.00 3.03 1.32 1.75 0.00 0.00 3.95 0.00 0.99 2.11 0.00 0.00 1.35 4.44 2.38 2.44 3.64 0.00 0.00 K alternative_donor CG1965,I_chr3R_2902064_2902611 chr3R + chr3R_2893812_2894429 chr3R_2893817_2894429 chr3R_2894430_2894670;chr3R_2893510_2893811 10.00 NA NA 3.33 NA NA 10.00 5.56 7.69 NA 5.88 5.00 NA 14.29 5.56 15.38 NA NA 12.50 13.04 6.67 NA 16.67 NA NA 0.00 14.29 NA NA NA 54.55 NA 14.29 4.35 NA NA NA 6.67 NA 10.00 NA 10.00 NA NA NA NA NA NA 12.50 NA NA NA NA NA 29.41 NA NA NA K jcn_only_AD CDase chr3R + chr3R_26286512_26288536;chr3R_26286611_26288536;chr3R_26286613_26288536;chr3R_26286631_26288536 chr3R_26286617_26288536 chr3R_26288537_26288691;chr3R_26286221_26286511 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N intron_retention spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20336550_20336621 chr2L_20336549_20336550;chr2L_20336621_20336622 chr2L_20336470_20336549;chr2L_20336622_20336649 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 69.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1524140_1524194 chr3L_1524139_1524140;chr3L_1524194_1524195 chr3L_1524027_1524139;chr3L_1524195_1524357 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 5.26 0.00 K intron_retention lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6394546_6419543,I_chr2R_6403557_6406705,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6403164_6403339 chr2R_6403163_6403164;chr2R_6403339_6403340 chr2R_6403096_6403163;chr2R_6403340_6403556 21.43 21.43 20.00 44.83 20.83 18.18 37.37 21.71 21.57 11.11 22.64 24.24 23.19 28.81 27.14 30.21 21.92 12.68 28.99 23.53 28.00 16.42 22.47 19.05 27.78 18.75 31.15 15.62 10.00 21.28 20.00 35.71 35.14 20.87 31.71 21.05 22.67 14.29 23.40 17.24 26.92 20.87 20.93 15.00 43.75 16.67 15.00 16.13 14.29 28.57 22.97 13.64 22.73 10.53 22.08 20.83 15.38 17.86 K alternative_acceptor CG31922,RI_chr2L_1170364_1170429 chr2L + chr2L_1170364_1170429 chr2L_1170364_1170418 chr2L_1170264_1170363;chr2L_1170430_1170529 90.45 NA NA 100.00 NA NA NA 100.00 NA NA NA 91.67 NA NA 100.00 81.82 NA NA 87.50 92.31 NA NA NA NA NA 88.89 NA NA NA NA 73.33 NA NA 87.50 NA NA NA NA NA NA 87.50 100.00 NA NA NA 90.91 NA NA 91.67 NA 100.00 NA NA NA 81.82 88.89 NA 90.00 K jcn_only_AA CG2371 chrX - chrX_11572304_11572435 chrX_11572383_11572435 chrX_11572436_11572509;chrX_11571619_11572303 92.02 NA NA NA NA NA NA NA 96.15 NA NA NA NA NA NA NA NA NA NA 90.00 NA NA 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA 95.83 NA NA NA NA NA NA NA NA 86.36 NA NA NA NA 90.48 NA NA NA NA 93.55 95.00 NA K intron_retention CG7998 chr3R + chr3R_14052289_14052451 chr3R_14052288_14052289;chr3R_14052451_14052452 chr3R_14051893_14052288;chr3R_14052452_14052659 0.29 0.51 1.00 1.03 0.00 0.00 1.21 0.38 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.24 0.00 1.54 0.85 0.36 1.09 0.00 1.04 0.00 1.54 0.69 0.53 0.00 0.39 0.38 0.54 0.00 0.90 0.00 0.29 0.53 1.43 0.84 0.00 0.00 0.34 0.00 1.15 0.00 0.68 1.89 0.66 0.00 0.00 0.00 0.52 0.00 0.00 0.00 K alternative_donor G-salpha60A chr2R + chr2R_19830338_19831752;chr2R_19830349_19831752 chr2R_19830125_19831752 chr2R_19831753_19832263;chr2R_19830091_19830124 92.59 83.33 96.30 94.92 92.59 83.33 94.83 95.35 97.73 NA 90.48 93.75 95.65 97.22 92.11 98.00 95.00 88.24 94.59 97.37 92.59 69.23 100.00 96.15 92.31 88.00 81.25 90.91 68.42 NA 93.33 NA 70.00 93.18 NA 75.00 95.24 88.24 92.00 77.27 NA 93.44 95.45 91.67 84.62 85.71 95.65 NA 92.73 100.00 88.89 92.59 92.31 NA 94.29 90.91 100.00 NA K intron_retention CG4068 chrX - chrX_4823342_4823406 chrX_4823341_4823342;chrX_4823406_4823407 chrX_4822250_4823341;chrX_4823407_4823737 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.98 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 1.16 1.00 0.00 NA 0.00 0.00 0.00 NA 0.00 3.57 2.38 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 N jcn_only_AD CG33936,CG33937,RI_chr3R_5183458_5183705 chr3R + chr3R_5182946_5183705;chr3R_5180806_5183705 chr3R_5183178_5183705 chr3R_5183706_5183805 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.01 2.45 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.71 0.00 0.00 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 K jcn_only_AA MESK2,I_chr2R_17401067_17401713 chr2R + chr2R_17389985_17394826 chr2R_17389985_17394799 chr2R_17389891_17389984;chr2R_17394827_17394906 65.00 63.64 NA 60.61 NA NA 66.67 58.82 69.81 NA NA 57.69 NA 57.69 NA 68.57 NA NA 72.73 NA NA 51.61 60.00 NA NA NA NA NA NA NA 61.90 NA 61.90 67.65 68.18 NA NA NA NA 56.52 72.73 65.52 85.00 59.26 NA 65.00 NA NA 62.50 NA 65.38 NA NA NA 68.18 NA 66.67 NA K intron_retention ATPsyn-Cf6,I_chr3R_19181282_19181355,I_chr3R_19181508_19181563,I_chr3R_19181524_19181702 chr3R - chr3R_19181282_19181355 chr3R_19181281_19181282;chr3R_19181355_19181356 chr3R_19181216_19181281;chr3R_19181356_19181424 100.00 97.37 100.00 100.00 100.00 100.00 100.00 98.65 98.51 96.30 100.00 98.80 100.00 100.00 97.83 100.00 100.00 100.00 96.43 99.30 100.00 100.00 100.00 97.14 100.00 97.50 98.25 100.00 100.00 97.06 98.51 100.00 97.62 100.00 100.00 100.00 100.00 100.00 97.87 100.00 98.65 98.41 100.00 96.55 100.00 98.82 97.50 100.00 98.33 97.22 100.00 100.00 100.00 94.59 100.00 100.00 97.30 100.00 K intron_retention CG8929 chr2R + chr2R_16215075_16215371 chr2R_16215074_16215075;chr2R_16215371_16215372 chr2R_16214949_16215074;chr2R_16215372_16215639 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 95.65 NA NA 100.00 NA NA 100.00 100.00 100.00 NA 93.33 100.00 100.00 100.00 100.00 100.00 88.89 100.00 93.75 100.00 100.00 100.00 95.65 NA NA 95.00 100.00 100.00 NA NA 100.00 92.86 90.91 100.00 100.00 100.00 NA 100.00 NA NA 94.44 100.00 93.33 100.00 100.00 NA 100.00 100.00 NA 100.00 K intron_retention I_chrX_1962457_1964222,CG4045 chrX - chrX_1969652_1969701 chrX_1969651_1969652;chrX_1969701_1969702 chrX_1969240_1969651;chrX_1969702_1969920 13.29 10.08 13.13 18.84 14.93 15.19 16.39 11.70 16.20 5.15 15.25 11.45 10.34 15.62 13.92 22.06 10.42 25.81 14.67 14.29 16.67 41.27 13.33 10.26 20.90 23.44 17.39 30.77 18.84 10.34 19.51 11.65 16.30 12.24 13.19 9.00 7.65 10.00 11.59 16.15 20.00 12.05 15.00 7.76 11.33 13.29 13.60 10.40 17.57 9.77 12.14 9.72 6.76 8.92 15.38 9.80 5.56 9.80 K cassette R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8088454_8089393 chr2L_8088454_8088609;chr2L_8088716_8089393 chr2L_8088610_8088715 chr2L_8088448_8088453;chr2L_8089394_8089493 16.23 16.67 NA 14.29 NA 18.18 15.00 23.81 17.86 NA NA 12.00 15.79 13.33 NA 20.59 25.00 27.27 28.57 16.67 NA NA 6.90 NA 8.33 NA NA NA NA NA 27.27 NA NA 20.00 5.56 12.50 NA NA NA 8.00 NA 30.77 27.27 7.41 NA NA 0.00 NA 21.43 NA 7.14 NA 5.56 NA 42.86 NA 8.33 NA K alternative_acceptor I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10062078_10063898,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10062078_10063910 chr2R_10062078_10063898 chr2R_10061978_10062077;chr2R_10063911_10063998 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.83 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.67 0.53 1.37 0.57 0.00 0.00 1.33 0.00 0.00 0.61 0.58 0.00 0.91 1.11 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7837 chr3R - chr3R_25623216_25623291 chr3R_25623215_25623216;chr3R_25623291_25623292 chr3R_25622668_25623215;chr3R_25623292_25623498 0.00 NA 0.00 2.00 0.00 0.00 0.00 0.00 1.61 NA 0.00 0.00 0.00 3.45 0.00 4.65 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 13.33 0.00 0.00 0.00 0.00 2.27 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.76 0.00 NA 4.44 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AD I_chr2R_11986525_11986583,mRpL34,RI_chr2R_11991687_11992537 chr2R + chr2R_11986521_11986583 chr2R_11986525_11986583 chr2R_11986584_11986683;chr2R_11986476_11986520 1.09 0.00 0.00 2.30 0.00 2.33 2.86 3.37 2.27 NA 0.00 1.47 0.00 0.00 NA 0.00 NA 4.35 NA 2.99 0.00 NA NA 5.88 NA NA NA NA 4.35 NA NA 0.00 NA 1.49 NA NA 2.22 0.00 2.17 0.00 NA 0.71 4.17 NA 1.79 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 3.17 1.61 K intron_retention msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2567289_2567369 chr3L_2567288_2567289;chr3L_2567369_2567370 chr3L_2567046_2567288;chr3L_2567370_2567814 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.17 0.00 0.00 0.25 1.08 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette shot,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9753001_9753565 chr2R_9753001_9753261;chr2R_9753411_9753565 chr2R_9753262_9753410 chr2R_9752056_9753000;chr2R_9753566_9753631 0.68 0.62 0.65 1.03 0.60 0.65 0.81 1.23 0.41 1.94 0.69 0.66 0.83 0.75 0.63 1.12 0.56 0.61 0.68 0.54 0.90 1.63 0.77 0.50 1.52 1.64 2.08 2.05 0.00 0.00 1.11 0.00 0.73 0.77 1.03 0.93 0.66 0.82 0.00 0.53 1.19 0.93 0.00 0.00 0.76 0.00 0.50 1.23 0.67 0.62 0.00 0.00 0.88 0.00 0.51 0.52 0.98 1.33 K alternative_donor CG34394,I_chr2L_3365674_3365965 chr2L - chr2L_3361444_3362442 chr2L_3361444_3362415 chr2L_3360996_3361443;chr2L_3362443_3362718 87.50 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 67.65 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA 87.50 NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Xrp1,I_chr3R_14741648_14750799,I_chr3R_14750298_14750799 chr3R + chr3R_14741648_14745144 chr3R_14741647_14741648;chr3R_14745144_14745145 chr3R_14741548_14741647;chr3R_14745145_14745234 1.06 0.00 1.18 0.55 2.00 0.00 1.27 1.42 2.48 0.00 3.77 1.30 0.00 2.90 1.98 1.61 2.78 1.59 0.93 1.61 4.48 1.55 0.86 1.06 0.00 0.00 1.82 5.83 8.77 4.62 0.61 2.86 0.00 1.78 0.00 3.28 3.45 0.00 0.00 1.11 0.00 1.80 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.00 2.78 K intron_retention Pak,RI_chr3R_2181143_2181934 chr3R + chr3R_2183063_2184004 chr3R_2183062_2183063;chr3R_2184004_2184005 chr3R_2182472_2183062;chr3R_2184005_2184744 3.08 2.30 3.70 4.81 2.99 2.70 4.27 0.94 2.62 3.08 0.00 2.70 1.79 5.97 1.27 2.20 2.94 1.20 1.47 2.96 0.00 5.76 6.16 2.61 6.49 8.47 6.06 7.14 10.64 3.30 0.00 5.26 4.00 2.46 3.95 8.05 4.49 5.94 5.51 4.32 0.00 1.38 0.00 4.00 3.36 6.19 3.70 3.45 2.61 4.44 2.27 0.00 1.94 5.48 2.00 2.44 5.88 2.15 K jcn_only_AD Dscam,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3249373_3250528;chr2R_3249373_3251682;chr2R_3249373_3254309;chr2R_3249373_3253447;chr2R_3249373_3252522;chr2R_3249373_3252236;chr2R_3249373_3252816;chr2R_3249373_3253970;chr2R_3249373_3250836;chr2R_3249373_3251099 chr2R_3249373_3251960 chr2R_3249273_3249372 4.00 0.00 8.51 3.12 4.00 9.68 5.00 0.00 4.88 4.55 NA 5.88 5.41 8.82 0.00 3.77 5.56 0.00 0.00 10.00 4.00 8.75 4.29 2.78 8.51 4.00 8.11 3.23 1.79 3.53 7.84 3.57 3.75 7.27 6.45 0.00 0.00 5.26 2.44 2.25 3.45 4.62 6.25 1.72 0.00 7.89 8.33 5.81 10.45 NA 0.00 0.00 6.45 NA 1.92 0.00 NA 8.70 K cassette zip,I_chr2R_20878796_20879147 chr2R - chr2R_20878796_20879332 chr2R_20878796_20879087;chr2R_20879222_20879332 chr2R_20879088_20879221 chr2R_20878696_20878795;chr2R_20879333_20879496 0.41 0.27 0.24 0.20 0.00 0.49 1.20 0.58 0.25 0.47 0.71 0.78 1.29 0.27 0.38 0.90 0.51 0.28 0.60 0.84 0.58 4.29 0.23 0.45 0.36 1.53 0.26 0.38 0.44 0.34 0.41 0.47 0.36 0.44 0.34 0.41 0.00 0.68 0.62 0.46 0.37 0.65 0.25 0.00 0.34 0.62 0.47 0.31 0.73 0.39 0.23 0.84 0.31 0.64 0.36 0.24 0.31 0.27 K jcn_only_AA aux chr3R + chr3R_52414_52485 chr3R_52414_52472 chr3R_52252_52413;chr3R_52486_53244 100.00 100.00 100.00 100.00 100.00 100.00 99.19 100.00 100.00 100.00 100.00 99.37 100.00 100.00 100.00 100.00 100.00 98.57 100.00 100.00 100.00 100.00 100.00 99.36 98.94 100.00 100.00 97.10 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG17082,I_chr2R_632143_635290,R_chr2R_642176_644740,I_chr2R_644094_644145,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_631984_636726;chr2R_632083_636726;chr2R_631907_636726;chr2R_631971_636726 chr2R_632143_636726 chr2R_636727_636891;chr2R_631902_631906 33.33 NA NA 35.71 NA NA 37.50 33.33 23.53 NA NA 33.33 40.00 20.00 NA 43.75 12.50 NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA K alternative_last_exon bwa,I_chr2L_20069515_20073377,I_chr2L_20073310_20073377 chr2L + chr2L_20072647_20073377 chr2L_20072647_20073138 chr2L_20073378_20073731 chr2L_20073139_20073207 chr2L_20072354_20072646 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1662576_1662764 chr2R_1662576_1662630 chr2R_1662507_1662575 99.04 99.11 100.00 99.22 98.77 99.04 100.00 99.26 98.96 98.15 98.86 98.44 100.00 98.20 99.09 98.20 98.84 99.03 98.04 98.99 98.90 100.00 98.75 97.78 100.00 98.53 97.44 100.00 97.92 100.00 98.44 97.70 100.00 98.72 95.18 95.71 98.52 98.13 100.00 100.00 98.31 98.92 98.84 100.00 100.00 99.19 99.27 100.00 99.11 97.47 100.00 100.00 100.00 100.00 100.00 99.37 99.07 99.42 K intron_retention Lag1,RI_chrX_6153758_6161036,I_chrX_6160907_6161036 chrX - chrX_6153268_6153344 chrX_6153267_6153268;chrX_6153344_6153345 chrX_6152930_6153267;chrX_6153345_6153566 0.25 0.97 0.00 0.34 0.00 0.65 0.19 0.58 0.86 0.45 0.00 0.34 0.00 0.00 0.47 0.00 0.00 0.00 0.47 0.62 0.50 0.33 0.57 0.00 0.00 0.00 0.52 0.44 0.68 0.00 0.00 0.00 0.25 0.34 0.92 0.38 0.45 0.00 0.48 0.17 0.52 0.69 0.00 0.00 0.00 0.50 0.00 0.00 0.60 0.00 0.53 0.55 0.00 0.00 0.00 0.00 0.00 0.33 N alternative_donor e(r) chrX - chrX_8799622_8800141;chrX_8799622_8799982 chrX_8799622_8799801 chrX_8799538_8799621;chrX_8800142_8800333 2.92 2.08 1.83 3.77 1.50 3.41 2.53 3.31 2.72 2.67 0.99 3.25 1.53 4.12 4.27 3.23 3.12 2.68 3.03 5.05 3.81 2.22 1.49 2.23 3.85 4.42 3.38 5.00 6.35 1.94 1.82 5.77 2.97 3.45 2.59 3.75 1.49 1.72 2.27 5.22 3.37 2.31 4.44 2.74 8.57 4.10 2.50 12.20 2.82 2.58 2.92 1.28 2.88 2.52 3.76 1.60 2.62 9.09 K alternative_acceptor CG14133 chr3L - chr3L_11683209_11683325;chr3L_11683229_11683325 chr3L_11683239_11683325 chr3L_11683326_11683412;chr3L_11682731_11683208 22.09 15.38 33.33 33.33 38.46 18.75 33.33 20.00 21.95 NA 25.00 23.53 20.00 20.00 45.45 31.25 25.00 33.33 18.18 21.21 22.22 NA 20.00 NA NA 37.50 NA NA NA 23.08 15.79 20.00 18.75 27.27 NA NA 23.53 18.18 30.00 20.00 NA 25.00 28.57 11.11 30.77 25.00 15.38 8.33 27.27 8.33 12.50 NA 0.00 16.67 35.29 20.00 12.50 23.08 K jcn_only_AA MB8.chr3R.pasa.66,CG1234,CG1227 chr3R - chr3R_3072539_3072596 chr3R_3072545_3072596 chr3R_3072597_3072717;chr3R_3070932_3072538 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.65 K cassette CG1674,I_chr4_253475_257020,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_254972_257020 chr4_254972_255489;chr4_255571_257020 chr4_255490_255570 chr4_254893_254971;chr4_257021_257101 0.00 0.00 0.00 5.56 NA 0.00 0.00 2.27 1.47 NA NA 1.89 0.00 3.45 0.00 2.08 0.00 NA 4.17 0.00 NA NA 5.56 4.76 NA NA 6.67 NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA 0.00 NA 2.78 0.00 5.56 NA NA NA NA 1.96 NA 3.85 0.00 NA NA 4.76 NA 0.00 0.00 K alternative_donor Npc2b,I_chr3R_9916602_9917530 chr3R + chr3R_9916599_9917019 chr3R_9916602_9917019 chr3R_9917020_9917123;chr3R_9916502_9916598 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG16833,I_chr2L_10994022_10994325,I_chr2L_10994919_10997334 chr2L + chr2L_10990784_10991058 chr2L_10990783_10990784;chr2L_10991058_10991059 chr2L_10990117_10990783;chr2L_10991059_10991885 20.94 NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA 7.69 NA NA NA NA NA 11.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette Slip1,RI_chr4_684967_689045,I_chr4_685717_686576,RI_chr4_685717_689045,RI_chr4_687548_689045 chr4 + chr4_684967_686576 chr4_684967_685613;chr4_685932_686576 chr4_685614_685931 chr4_684914_684966;chr4_686577_686676 86.96 86.67 93.75 98.46 86.96 84.00 85.19 88.00 82.50 100.00 100.00 87.50 85.19 87.50 87.50 80.95 80.56 100.00 82.93 86.25 96.15 87.50 87.88 84.00 89.47 77.14 96.43 100.00 81.25 77.42 91.43 84.21 94.44 79.75 85.71 96.43 95.83 86.67 88.00 86.49 90.00 81.25 86.21 84.62 88.89 88.57 93.75 97.06 83.87 89.47 86.84 88.89 71.43 75.00 84.78 84.21 86.96 78.05 K intron_retention Mmp1,E_chr2R_20560380_20562585,I_chr2R_20564123_20565214,I_chr2R_20569965_20572193 chr2R - chr2R_20559830_20562495 chr2R_20559829_20559830;chr2R_20562495_20562496 chr2R_20559732_20559829;chr2R_20562496_20562664 8.46 6.33 7.93 4.98 6.53 6.42 9.27 5.10 8.06 5.79 13.64 16.26 8.57 8.23 8.33 8.90 8.61 5.93 6.47 6.35 10.00 9.06 7.72 6.96 9.09 9.49 7.42 12.57 17.70 9.58 7.79 11.45 10.62 6.77 9.05 12.02 5.83 5.87 6.74 6.87 10.70 7.31 9.09 8.79 8.56 8.46 6.31 15.65 7.95 12.50 8.97 7.32 13.48 8.82 6.12 8.18 10.02 18.57 K jcn_only_AA Pur-alpha,I_chr4_581447_585166 chr4 + chr4_585289_586035 chr4_585289_586032 chr4_585180_585288;chr4_586036_586083 34.78 NA NA NA NA NA NA 45.45 34.78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.00 NA NA NA NA NA NA NA NA NA K intron_retention PNGase,I_chr2R_1906759_1906817,I_chr2R_1906899_1906977 chr2R + chr2R_1905714_1905768 chr2R_1905713_1905714;chr2R_1905768_1905769 chr2R_1905320_1905713;chr2R_1905769_1905860 6.76 2.13 8.79 10.07 7.41 8.54 4.76 8.90 6.29 8.11 6.90 9.77 4.41 7.23 8.79 8.18 4.48 7.79 6.52 5.30 9.26 4.21 10.78 5.68 3.51 6.67 16.22 8.06 1.05 0.00 13.16 7.69 3.67 6.56 8.22 14.00 6.86 6.10 8.55 5.10 5.66 6.76 8.06 6.41 3.45 10.19 6.00 6.77 6.99 5.41 6.48 3.92 3.28 9.43 6.06 9.09 2.97 2.61 K intron_retention CG30421 chr2R + chr2R_20643497_20643560 chr2R_20643496_20643497;chr2R_20643560_20643561 chr2R_20642709_20643496;chr2R_20643561_20644462 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 1.69 0.00 0.00 0.00 10.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor MB8.chr3R.pasa.66,Alh,I_chr3R_2927820_2933442,RI_chr3R_2946518_2946663 chr3R - chr3R_2925245_2926858 chr3R_2926268_2926858 chr3R_2926859_2927219;chr3R_2924548_2925244 8.52 6.25 6.67 9.09 7.14 8.33 5.56 9.52 5.71 5.56 10.00 21.62 11.11 20.00 5.26 4.76 NA 5.88 6.67 5.56 6.67 13.51 10.00 14.29 16.67 7.69 12.00 15.00 14.29 14.29 5.26 16.67 15.00 5.26 4.76 14.29 9.09 9.09 7.32 11.43 14.29 6.90 6.67 11.76 12.50 10.53 9.09 12.00 7.14 3.85 8.70 6.67 5.88 7.69 0.00 6.25 5.88 30.00 K intron_retention und chr2L + chr2L_9763735_9763835 chr2L_9763734_9763735;chr2L_9763835_9763836 chr2L_9763520_9763734;chr2L_9763836_9764648 0.66 0.79 0.00 1.61 0.00 0.00 0.66 0.00 0.00 0.85 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 1.47 0.38 0.00 3.55 0.00 1.14 5.88 1.85 3.62 2.17 6.57 0.00 5.21 0.00 1.43 0.00 1.77 6.40 1.91 0.83 2.22 1.98 1.66 0.44 0.00 2.15 0.00 2.91 0.71 1.46 0.00 0.75 2.41 0.00 1.19 0.00 0.00 0.00 0.00 0.44 K intron_retention mud chrX + chrX_14142192_14142257 chrX_14142191_14142192;chrX_14142257_14142258 chrX_14141880_14142191;chrX_14142258_14142432 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 NA NA 0.00 0.00 0.00 7.14 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 3.85 4.44 11.43 NA NA NA 6.25 NA NA 0.00 0.00 25.00 0.00 0.00 0.00 0.00 NA 2.17 3.45 NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA N intron_retention spin,I_chr2R_12013288_12013847 chr2R + chr2R_12022823_12023531 chr2R_12022822_12022823;chr2R_12023531_12023532 chr2R_12023532_12023630 78.26 NA NA 56.52 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA lkb1 chr3R + chr3R_9502667_9502743 chr3R_9502667_9502737 chr3R_9502444_9502666;chr3R_9502744_9503934 95.55 97.37 94.12 94.74 NA 92.59 100.00 100.00 94.23 NA NA 94.23 NA NA NA 94.44 100.00 NA 92.59 96.15 95.24 90.32 96.36 97.06 100.00 NA 95.12 95.45 97.62 95.65 88.00 100.00 97.10 94.12 97.14 94.29 97.56 96.67 95.12 93.62 92.68 92.00 87.50 96.55 100.00 98.41 96.97 95.24 98.04 92.86 97.92 96.67 95.00 NA 96.15 97.22 90.32 92.86 K intron_retention CG32138 chr3L + chr3L_14062497_14062991 chr3L_14062496_14062497;chr3L_14062991_14062992 chr3L_14062186_14062496;chr3L_14062992_14063021 25.93 23.08 34.78 40.00 36.84 30.00 36.11 31.71 23.44 14.29 26.32 16.67 33.33 38.10 25.93 27.59 29.63 13.16 34.38 24.14 33.33 13.33 27.50 23.53 30.77 19.35 34.62 43.75 40.00 42.86 16.28 6.25 26.32 23.81 29.41 0.00 15.69 15.38 16.67 34.62 20.69 25.93 15.38 21.43 10.53 25.93 27.27 24.14 30.23 16.67 30.56 26.67 0.00 33.33 24.32 19.23 18.18 20.00 K jcn_only_AA CycB,I_chr2R_18692089_18692164 chr2R - chr2R_18693064_18693171 chr2R_18693070_18693171 chr2R_18693172_18693380;chr2R_18692165_18693063 97.27 99.28 95.93 97.07 95.60 96.30 98.10 96.89 97.29 96.72 98.86 95.79 98.85 98.08 97.37 97.92 96.94 98.15 100.00 97.45 95.19 100.00 98.58 96.93 95.51 99.34 97.10 96.97 97.96 97.20 98.08 97.17 98.33 97.27 97.84 100.00 96.72 97.40 96.51 98.26 95.45 97.08 98.33 94.74 98.55 96.36 95.04 95.73 95.69 96.88 97.84 100.00 96.61 96.52 99.36 95.54 100.00 97.54 K jcn_only_AA Tao-1,E_chrX_19467010_19469645 chrX - chrX_19467498_19469390 chrX_19469008_19469390 chrX_19469391_19470002;chrX_19467324_19467497 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.19 1.25 0.00 1.88 0.00 0.00 0.39 0.00 0.00 0.47 0.46 1.00 0.56 1.79 0.00 0.00 0.00 0.00 0.93 0.00 0.62 0.41 0.00 0.90 0.48 0.00 0.00 0.00 0.22 0.00 0.52 1.28 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.45 1.02 0.00 0.37 0.00 0.00 0.63 0.91 0.00 0.00 0.54 K intron_retention None chrU + chrU_1179335_1183262 chrU_1179334_1179335;chrU_1183262_1183263 4.08 3.96 4.35 18.18 3.90 1.83 10.00 6.72 5.38 5.26 8.47 5.77 9.91 7.48 4.32 4.65 0.00 2.53 5.52 3.66 2.90 0.00 2.17 4.30 4.35 2.06 3.06 5.56 4.40 5.33 5.11 0.00 2.60 4.43 2.86 4.71 0.00 3.85 2.82 2.30 2.56 4.76 7.77 4.08 2.04 2.82 2.56 5.21 6.18 0.00 5.61 4.29 2.50 1.23 3.85 4.49 1.77 1.79 K cassette nompB chr2L - chr2L_21578530_21578730 chr2L_21578530_21578589;chr2L_21578677_21578730 chr2L_21578590_21578676 chr2L_21578522_21578529;chr2L_21578731_21579376 6.67 NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA Start1,I_chr2R_20463661_20463716 chr2R + chr2R_20464631_20464698 chr2R_20464631_20464675 chr2R_20464089_20464630;chr2R_20464699_20464822 0.00 0.00 5.17 1.79 0.00 0.00 1.15 0.00 0.79 4.76 0.00 1.19 2.13 0.00 0.00 0.00 0.00 0.00 1.30 1.85 0.00 1.45 0.00 0.00 2.33 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 1.22 0.00 2.86 0.00 0.00 0.00 1.32 0.00 3.57 0.00 0.00 1.82 2.53 3.45 0.00 2.29 0.00 2.70 0.00 0.00 0.00 1.30 3.23 0.00 0.00 K alternative_acceptor PRL-1,RI_chr2L_16249092_16250080,I_chr2L_16250028_16250080 chr2L - chr2L_16249722_16250080;chr2L_16249707_16250080;chr2L_16249092_16250080 chr2L_16250028_16250080 chr2L_16250081_16250158;chr2L_16248992_16249091 0.32 0.00 0.00 0.37 1.11 0.79 0.35 0.30 0.28 0.00 0.86 0.38 0.00 0.62 0.00 0.32 0.70 0.00 0.00 0.29 0.00 0.98 0.00 0.00 0.00 0.00 1.37 1.03 0.00 0.00 0.60 1.37 0.77 0.35 0.95 0.81 0.00 0.00 0.00 0.96 1.18 0.34 0.00 0.53 1.27 0.75 0.00 0.52 0.31 0.00 0.67 0.86 0.00 0.00 0.60 0.00 0.00 1.14 K intron_retention CG8258 chr2R - chr2R_4793084_4793147 chr2R_4793083_4793084;chr2R_4793147_4793148 chr2R_4792332_4793083;chr2R_4793148_4794170 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.52 0.00 0.00 0.00 0.19 0.22 0.00 0.00 0.00 0.00 0.00 0.27 0.51 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.21 0.10 0.49 0.38 0.00 0.11 0.16 0.18 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 N cassette CG7777,I_chr2R_7323928_7328572 chr2R + chr2R_7327836_7329439 chr2R_7327836_7328572;chr2R_7329126_7329439 chr2R_7328573_7329125 chr2R_7327692_7327835;chr2R_7329440_7329695 100.00 100.00 100.00 87.14 100.00 92.86 86.27 93.75 94.71 100.00 100.00 95.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.41 91.26 86.42 94.37 100.00 100.00 100.00 90.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.17 100.00 100.00 100.00 K intron_retention EI_chr3R_4647896_4648190,CG8379 chr3R + chr3R_4651131_4651354 chr3R_4651130_4651131;chr3R_4651354_4651355 chr3R_4650677_4651130;chr3R_4651355_4652310 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG16791 chr3R - chr3R_17149940_17160248 chr3R_17149949_17160248 chr3R_17160249_17160421;chr3R_17149849_17149939 80.00 76.92 90.00 71.43 NA NA 80.00 88.89 85.00 NA 87.50 80.00 100.00 70.00 66.67 77.78 75.00 85.71 91.67 73.68 NA NA 63.64 60.00 NA 80.00 66.67 NA NA NA 66.67 NA 88.89 78.95 60.00 NA NA 87.50 91.67 76.92 75.00 76.47 88.89 81.82 NA 77.78 NA 100.00 81.82 85.71 91.67 87.50 66.67 NA 66.67 66.67 NA 100.00 N jcn_only_AA RpL13A,I_chr3R_1450243_1451235,EI_chr3R_1450853_1451054,snoRNA:Me28S-U2134b,snoRNA:Me28S-U2134a chr3R + chr3R_1450853_1451134;chr3R_1450853_1451054 chr3R_1450853_1451235 chr3R_1450753_1450852;chr3R_1451236_1451335 99.92 99.93 99.95 99.95 99.88 99.90 99.67 99.96 99.96 99.87 99.91 99.95 99.91 99.87 99.93 99.92 99.91 99.98 99.93 99.93 99.97 99.90 99.92 99.92 99.89 99.80 99.87 99.76 99.85 99.96 99.91 99.94 99.89 99.94 99.91 99.82 99.94 99.96 99.96 99.93 99.52 99.93 99.94 99.90 99.96 99.88 99.93 99.84 99.86 99.88 99.86 99.95 99.95 99.88 99.91 99.94 99.93 99.91 N alternative_donor Inos,I_chr2R_3344353_3345211 chr2R - chr2R_3344353_3346113;chr2R_3344353_3345211;chr2R_3344353_3346212 chr2R_3344353_3344799 chr2R_3344253_3344352;chr2R_3346213_3346215 0.37 0.16 0.28 0.39 0.27 0.46 0.50 0.36 0.25 0.28 0.23 0.46 0.17 0.48 0.46 0.66 0.31 0.52 0.45 0.23 0.22 1.30 0.37 0.32 0.36 0.35 0.46 0.86 1.17 0.48 0.59 0.47 0.26 0.37 0.51 0.39 0.29 0.21 0.30 0.38 0.33 0.37 0.45 0.41 0.27 0.43 0.43 0.60 0.30 0.26 0.26 0.60 0.16 0.29 0.46 0.26 0.17 0.34 K intron_retention CG5147 chr3L - chr3L_18101749_18101820 chr3L_18101748_18101749;chr3L_18101820_18101821 chr3L_18101680_18101748;chr3L_18101821_18102200 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 5.77 3.23 10.87 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.75 0.00 0.00 0.00 3.12 2.78 0.00 2.60 3.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.49 K intron_retention CG30389,CEF_chr2R_17041552_17043191,I_chr2R_17044803_17047935 chr2R - chr2R_17043036_17043109 chr2R_17043035_17043036;chr2R_17043109_17043110 chr2R_17042909_17043035;chr2R_17043110_17043173 55.77 51.06 50.98 60.71 41.94 55.88 76.06 60.00 56.18 58.70 53.19 52.17 48.72 51.61 57.78 57.69 60.61 55.56 54.05 50.77 61.11 54.10 45.54 40.54 61.54 54.29 54.43 67.74 70.37 46.43 41.94 70.27 79.12 56.36 55.77 61.02 48.28 43.94 48.78 52.08 83.64 57.83 60.87 73.12 74.19 66.07 55.36 60.00 54.24 63.08 45.71 59.65 43.33 53.57 52.17 57.58 60.00 48.84 K alternative_donor CG10992,RI_chrX_13675767_13676018 chrX - chrX_13675767_13675842;chrX_13675767_13676018 chrX_13675767_13675872 chrX_13675699_13675766;chrX_13676019_13676118 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Cortactin chr3R - chr3R_16890086_16890144 chr3R_16890085_16890086;chr3R_16890144_16890145 chr3R_16890017_16890085;chr3R_16890145_16890185 95.56 92.59 95.56 91.25 97.22 96.77 94.55 82.09 95.56 94.44 87.50 94.64 96.43 97.44 96.23 94.94 97.37 97.14 93.48 88.35 95.00 90.32 97.78 98.11 96.15 93.02 100.00 100.00 100.00 78.57 88.68 92.86 90.00 94.55 100.00 100.00 98.18 96.88 100.00 97.56 100.00 95.18 89.19 91.30 82.35 96.55 100.00 90.91 93.67 100.00 96.77 100.00 91.67 88.89 93.10 100.00 97.30 75.00 K cassette eIF4G,RI_chr4_947288_948286,I_chr4_948813_950447 chr4 - chr4_947288_950447 chr4_947288_948018;chr4_948778_950447 chr4_948019_948777 chr4_947188_947287;chr4_950448_950547 7.59 6.02 5.08 3.76 1.60 1.43 4.76 4.36 5.67 21.15 21.00 5.11 3.01 5.56 5.95 8.33 5.36 7.50 5.00 4.88 15.05 11.49 7.50 8.96 10.07 11.84 6.56 9.17 21.54 11.57 7.59 14.29 13.39 5.68 10.28 5.33 10.00 7.77 8.63 10.67 17.86 6.43 7.37 7.94 11.11 16.36 8.00 20.99 5.90 11.86 7.48 8.40 6.67 8.57 5.70 6.78 5.81 10.14 K alternative_donor Eph,I_chr4_631523_634240,I_chr4_631555_631910,I_chr4_631643_631910,I_chr4_639690_640473,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_631555_631910;chr4_631643_631910 chr4_631523_631910 chr4_631911_632010;chr4_631455_631522 100.00 NA 100.00 82.35 NA 100.00 97.06 100.00 95.92 NA NA 97.56 91.30 100.00 100.00 98.33 100.00 100.00 100.00 97.30 NA NA 100.00 100.00 NA NA 94.74 NA NA NA 100.00 NA NA 97.67 100.00 NA NA NA NA 100.00 NA 100.00 100.00 87.50 NA NA NA 100.00 95.12 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention Ca-P60A,RI_chr2R_19820338_19820541,I_chr2R_19820338_19821424,CEI_chr2R_19820338_19821830,I_chr2R_19820338_19823289 chr2R - chr2R_19820338_19821213 chr2R_19820337_19820338;chr2R_19821213_19821214 chr2R_19820238_19820337;chr2R_19821214_19821276 1.75 0.00 2.44 2.25 0.00 0.00 5.48 1.72 1.78 0.00 3.92 3.82 0.00 2.99 2.53 1.15 0.00 1.64 2.60 1.37 1.72 53.33 3.85 8.00 9.09 0.00 15.38 NA 13.04 8.33 1.92 0.00 6.25 1.94 13.04 10.00 8.11 0.00 0.00 4.88 17.65 1.45 0.00 10.53 0.00 0.00 0.00 13.04 1.53 0.00 2.63 0.00 0.00 NA 0.00 NA 0.00 0.00 N intron_retention CG11357,I_chr3L_4542781_4542858,C_chr3L_4563905_4578759 chr3L + chr3L_4542249_4551001 chr3L_4542248_4542249;chr3L_4551001_4551002 chr3L_4542167_4542248;chr3L_4551002_4551938 100.00 100.00 100.00 71.67 100.00 100.00 100.00 100.00 100.00 NA 53.33 89.47 100.00 100.00 100.00 87.06 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 82.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 87.10 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA K intron_retention CG11504 chr3R + chr3R_25823929_25823992 chr3R_25823928_25823929;chr3R_25823992_25823993 chr3R_25823519_25823928;chr3R_25823993_25825473 39.13 27.27 47.62 50.00 37.50 56.25 31.58 36.00 36.73 40.00 32.00 31.71 25.00 50.00 42.86 38.46 29.41 35.29 42.86 32.65 47.06 78.12 58.82 26.00 60.00 58.82 50.00 52.78 52.78 43.48 40.00 40.91 41.03 39.13 47.83 46.88 33.33 30.56 28.00 35.42 55.56 41.03 40.00 37.04 23.68 32.26 32.00 39.13 28.57 36.00 36.59 42.86 23.08 31.25 45.00 36.00 39.47 28.57 K intron_retention CG10576,snoRNA:Psi18S-1397,I_chr3L_5756877_5757511,I_chr3L_5758117_5758186 chr3L - chr3L_5755816_5756147 chr3L_5755815_5755816;chr3L_5756147_5756148 chr3L_5755688_5755815;chr3L_5756148_5756373 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG33087,EI_chr2R_4062337_4074409 chr2R + chr2R_4112633_4112767 chr2R_4112633_4112755 chr2R_4112506_4112632;chr2R_4112768_4113243 2.44 1.03 1.83 1.32 0.00 5.71 1.55 1.65 2.44 0.98 3.88 1.05 2.99 5.32 1.85 2.96 2.63 3.25 3.79 1.93 2.83 0.67 0.62 1.90 3.03 3.64 1.44 3.64 2.53 3.80 2.22 3.15 3.70 3.68 2.30 2.46 1.49 1.15 2.60 1.02 1.12 0.00 3.19 2.35 1.74 2.53 0.69 3.16 2.60 4.08 1.69 6.78 1.43 0.97 1.35 3.36 3.51 2.94 K intron_retention Hexo1,F_chr3L_4292778_4292830 chr3L + chr3L_4289881_4289960 chr3L_4289880_4289881;chr3L_4289960_4289961 chr3L_4289246_4289880;chr3L_4289961_4291050 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 2.04 3.12 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 3.70 0.00 0.00 0.00 0.00 2.08 0.00 K jcn_only_AA CG2875 chrX - chrX_3467334_3467400 chrX_3467337_3467400 chrX_3467401_3467615;chrX_3466628_3467333 96.15 91.18 93.75 88.46 NA 100.00 93.88 96.67 97.30 NA NA 100.00 96.43 91.30 93.94 94.83 96.30 96.43 100.00 98.63 NA NA 90.00 95.00 NA 95.83 100.00 100.00 NA 100.00 100.00 NA NA 94.74 NA NA 93.10 NA NA 96.30 NA 96.23 95.65 90.32 NA 95.45 91.18 95.83 91.18 80.00 97.62 100.00 95.45 NA 97.56 96.30 100.00 96.15 N jcn_only_AA exba,RI_chr3R_1426370_1426736 chr3R - chr3R_1426031_1426736;chr3R_1423660_1426736;chr3R_1425087_1426736 chr3R_1426370_1426736 chr3R_1426737_1426835 0.80 0.80 0.00 0.16 0.68 0.00 0.00 0.15 0.45 2.00 1.21 2.16 0.80 0.27 0.32 0.73 0.00 0.38 1.33 0.90 0.98 0.26 0.56 1.68 2.33 0.75 1.65 2.74 1.29 0.72 0.30 3.87 1.64 0.73 0.41 1.23 1.25 0.00 1.09 1.47 1.32 0.87 0.73 0.68 1.55 2.26 0.59 0.62 0.29 1.69 0.86 0.52 0.00 0.88 0.83 1.55 0.25 3.17 K alternative_acceptor Itp-r83A,I_chr3R_1356147_1356224 chr3R + chr3R_1356147_1356271 chr3R_1356147_1356224 chr3R_1356136_1356146;chr3R_1356272_1356324 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 4.26 7.14 7.14 2.27 5.00 5.26 9.09 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 NA 2.50 5.26 4.76 2.94 0.00 NA 0.00 6.06 0.00 0.00 3.28 0.00 0.00 3.92 NA 0.00 4.35 5.56 NA NA 0.00 0.00 5.00 0.00 2.70 0.00 NA NA 0.00 NA NA 0.00 K intron_retention l(2)37Cg,I_chr2L_19133352_19133773 chr2L - chr2L_19133352_19133408 chr2L_19133351_19133352;chr2L_19133408_19133409 chr2L_19133252_19133351;chr2L_19133409_19133699 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 4.55 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 8.33 0.00 NA 0.00 0.00 0.00 0.00 2.50 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG9609 chrX - chrX_16680538_16680597 chrX_16680537_16680538;chrX_16680597_16680598 chrX_16679170_16680537;chrX_16680598_16681051 0.00 0.00 0.00 0.00 NA NA NA NA 0.00 NA NA 3.12 NA 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 5.88 23.53 NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA K intron_retention Pvr,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8225513_8225671 chr2L_8225512_8225513;chr2L_8225671_8225672 chr2L_8225486_8225512;chr2L_8225672_8226141 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 1.22 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG7530,I_chr3R_10551870_10552281,eff chr3R - chr3R_10551870_10552911 chr3R_10551870_10552281 chr3R_10551770_10551869;chr3R_10552912_10553011 0.61 0.00 0.00 0.00 0.86 0.00 0.73 2.31 1.02 0.00 3.41 0.45 0.00 0.68 0.61 1.65 2.34 2.48 1.55 0.37 4.55 0.00 1.10 2.08 1.64 0.00 1.54 5.17 0.00 1.08 0.68 0.00 0.00 1.42 0.00 2.94 0.00 0.00 1.40 0.38 0.00 0.39 0.00 0.57 0.00 0.64 0.00 1.01 0.00 1.08 0.00 1.06 0.00 1.28 1.27 0.00 1.65 0.53 K alternative_acceptor CG6838,I_chr3L_22709306_22709668 chr3L - chr3L_22710167_22710293 chr3L_22710181_22710293 chr3L_22710294_22710303;chr3L_22710071_22710166 94.12 97.14 100.00 96.36 89.47 97.06 96.00 87.27 89.19 89.19 85.29 90.67 91.43 96.55 87.50 86.00 89.66 93.94 86.84 94.03 96.67 86.96 97.56 91.30 96.77 97.73 95.74 87.88 98.31 100.00 92.50 97.83 96.74 90.62 94.12 97.87 85.42 84.21 87.50 93.33 98.48 90.79 96.55 95.12 95.45 98.61 94.74 96.94 90.67 97.62 93.62 94.12 90.24 94.59 91.49 90.62 96.15 99.02 K intron_retention RpL15 chr3LHet + chr3LHet_2398018_2398127 chr3LHet_2398017_2398018;chr3LHet_2398127_2398128 chr3LHet_2397802_2398017;chr3LHet_2398128_2398454 99.08 97.44 99.23 99.81 99.32 99.15 99.20 99.43 99.62 98.88 99.41 99.69 99.60 98.95 98.80 99.66 100.00 98.17 99.45 99.71 99.41 100.00 96.91 99.01 96.58 97.92 95.74 97.80 96.12 98.96 100.00 97.94 100.00 98.55 100.00 95.18 99.21 98.46 97.46 100.00 98.82 99.10 100.00 98.25 98.17 99.08 99.12 99.04 99.37 97.10 98.84 97.94 97.67 97.67 99.39 99.22 98.95 99.33 K intron_retention Vha16,I_chr2R_2519645_2520499,RI_chr2R_2519646_2519840,I_chr2R_2519646_2520292,I_chr2R_2519646_2520298,I_chr2R_2519775_2520499 chr2R - chr2R_2519646_2519828 chr2R_2519645_2519646;chr2R_2519828_2519829 chr2R_2519546_2519645;chr2R_2519829_2519868 25.40 27.55 23.16 26.53 25.40 22.81 55.73 40.83 25.32 21.14 25.59 32.06 31.36 27.78 26.80 33.84 28.03 24.08 31.50 28.10 22.46 20.10 27.39 21.66 38.93 50.57 38.30 22.22 47.15 19.42 23.96 21.59 28.85 32.51 35.40 56.84 19.72 18.23 14.22 29.11 45.59 20.96 25.20 26.01 17.07 22.52 16.31 23.64 22.83 20.00 29.17 31.33 15.62 30.19 25.16 22.58 18.14 18.92 K intron_retention CG9934 chr2L - chr2L_13013884_13013948 chr2L_13013883_13013884;chr2L_13013948_13013949 chr2L_13013318_13013883;chr2L_13013949_13014291 0.00 0.00 5.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 1.39 0.00 0.00 K cassette CE_chrX_20766225_20927825,CG1518 chrX - chrX_20922633_20923436 chrX_20922633_20922942;chrX_20923231_20923436 chrX_20922943_20923230 chrX_20922153_20922632;chrX_20923437_20923826 100.00 100.00 99.53 99.66 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.50 99.47 100.00 100.00 99.45 100.00 100.00 99.81 100.00 99.64 99.73 99.69 100.00 99.59 100.00 100.00 99.44 99.49 100.00 99.21 99.57 100.00 100.00 100.00 99.71 99.62 100.00 99.69 99.32 99.76 100.00 100.00 100.00 100.00 99.50 100.00 99.74 100.00 100.00 99.49 99.48 100.00 100.00 99.55 100.00 100.00 K intron_retention CG8675,Fim,I_chrX_17193096_17195392 chrX - chrX_17183071_17195392 chrX_17183070_17183071;chrX_17195392_17195393 chrX_17181960_17183070;chrX_17195393_17195492 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Chc,RI_chrX_15728405_15729273,I_chrX_15728405_15729401,I_chrX_15728946_15729357 chrX - chrX_15728405_15729260;chrX_15728405_15729476;chrX_15728405_15729357;chrX_15728405_15729319 chrX_15728405_15729370 chrX_15728305_15728404;chrX_15729477_15729501 1.14 0.83 1.60 1.56 1.72 0.82 1.63 0.50 1.46 0.00 0.00 1.42 0.00 1.08 1.22 2.05 2.13 3.09 0.84 1.34 1.57 2.21 1.79 0.74 0.83 5.41 0.00 0.00 2.60 0.00 0.75 2.33 0.00 1.21 1.50 1.52 1.10 1.52 1.04 1.59 0.00 0.31 0.57 3.68 NA 0.00 1.18 0.00 2.16 0.00 0.62 0.00 0.00 4.44 2.26 0.00 0.00 2.13 K intron_retention sec63 chr3L + chr3L_7356871_7356952 chr3L_7356870_7356871;chr3L_7356952_7356953 chr3L_7355622_7356870;chr3L_7356953_7357703 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 1.23 0.45 0.00 0.00 0.85 0.80 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.31 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.23 K intron_retention Bj1 chr3L - chr3L_5925565_5925624 chr3L_5925564_5925565;chr3L_5925624_5925625 chr3L_5925506_5925564;chr3L_5925625_5925725 82.05 84.78 72.09 73.91 75.00 83.33 90.00 76.27 79.63 85.71 75.00 77.92 79.49 78.57 81.25 77.55 88.24 78.57 85.11 75.00 82.05 88.64 92.00 83.75 92.45 90.48 90.91 86.84 96.67 90.32 80.56 73.68 70.37 82.09 88.24 93.94 76.47 72.73 78.57 86.96 86.96 81.55 78.05 84.09 82.05 86.49 85.11 86.67 76.85 84.48 84.62 78.95 90.00 88.57 78.69 81.13 81.16 78.43 K intron_retention CG6995 chr3R + chr3R_20644572_20645450 chr3R_20644571_20644572;chr3R_20645450_20645451 chr3R_20644527_20644571;chr3R_20645451_20646489 8.00 5.71 8.00 11.76 4.35 15.38 27.91 16.28 11.94 NA 0.00 11.11 12.90 0.00 7.69 16.22 0.00 15.79 9.09 7.55 0.00 0.00 14.71 5.88 11.76 0.00 11.43 5.00 0.00 0.00 14.81 0.00 2.22 15.38 5.26 6.06 8.33 3.57 2.27 10.81 4.35 14.29 17.39 11.54 0.00 12.12 4.55 11.54 14.00 0.00 14.29 0.00 0.00 8.00 19.35 8.70 5.71 12.90 K jcn_only_AD CG17490 chr2L + chr2L_22431088_22432684;chr2L_22431020_22432684;chr2L_22431301_22432684 chr2L_22431120_22432684 chr2L_22432685_22433056;chr2L_22431014_22431019 8.62 NA NA NA NA NA NA 17.24 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 K jcn_only_AD CG6695 chr3R + chr3R_20481203_20481293 chr3R_20481207_20481293 chr3R_20481294_20483132;chr3R_20480896_20481202 2.70 3.28 12.50 2.13 2.70 3.33 0.00 3.23 3.95 3.28 0.00 3.53 3.33 3.03 2.94 2.94 6.90 0.00 0.00 2.88 0.00 1.82 2.73 5.17 9.23 8.33 4.55 2.33 1.20 2.63 2.56 0.00 2.27 3.23 5.00 5.41 1.53 1.43 7.00 2.16 4.71 1.19 4.00 1.39 3.64 1.12 0.00 3.07 1.37 3.28 1.37 0.00 1.96 0.00 2.50 5.41 0.00 0.00 K intron_retention I_chr2R_5999081_6000140,E_chr2R_6001157_6001630,CG11866 chr2R + chr2R_6007864_6007916 chr2R_6007863_6007864;chr2R_6007916_6007917 chr2R_6007556_6007863;chr2R_6007917_6008956 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 2.04 7.69 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention crq,I_chr2L_452737_452797 chr2L - chr2L_450541_450665 chr2L_450540_450541;chr2L_450665_450666 chr2L_449435_450540;chr2L_450666_450878 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mub,RI_chr3L_21901021_21901163,I_chr3L_21908756_21909179,CE_chr3L_21915743_21915791 chr3L + chr3L_21914428_21918279 chr3L_21914427_21914428;chr3L_21918279_21918280 chr3L_21914193_21914427;chr3L_21918280_21919094 0.00 0.00 10.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 6.67 0.00 0.00 4.35 NA NA NA 2.13 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 5.56 2.50 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.06 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 K alternative_donor CG11360,noncoding_20761,I_chr4_701221_705206,I_chr4_705000_705206 chr4 + chr4_691793_701065;chr4_692014_701065 chr4_692243_701065 chr4_701066_701220;chr4_691790_691792 33.33 33.33 25.00 66.67 75.00 50.00 33.33 35.29 36.84 50.00 40.00 22.73 33.33 36.36 25.00 33.33 50.00 50.00 23.08 27.27 25.00 28.57 46.15 33.33 NA 33.33 25.00 66.67 35.71 25.00 38.46 NA 57.14 26.67 40.00 30.77 42.86 28.57 NA 35.71 NA 42.86 30.00 28.57 NA 50.00 36.36 37.50 28.57 NA 36.36 28.57 37.50 33.33 33.33 33.33 NA NA K jcn_only_AD I_chrX_15223901_15223968,HDAC6,I_chrX_15232958_15233665 chrX + chrX_15232699_15233659;chrX_15232958_15233659 chrX_15232738_15233659 chrX_15233660_15234340;chrX_15232108_15232698 3.77 3.33 0.00 13.79 0.00 4.35 NA 12.82 3.77 NA NA 2.08 NA 9.52 13.64 NA 4.76 0.00 NA 5.56 5.00 3.85 2.04 2.33 3.03 20.83 0.00 4.35 10.00 3.12 2.44 12.00 6.38 7.89 0.00 3.85 2.30 3.85 2.99 5.08 3.03 0.00 5.00 12.90 1.54 9.62 2.38 3.70 6.25 3.33 2.78 0.00 7.84 5.17 3.23 2.86 1.67 7.14 K intron_retention mip120,I_chr2R_9394299_9394351,RI_chr2R_9394299_9395019,EfTuM chr2R + chr2R_9394299_9395019 chr2R_9394298_9394299;chr2R_9395019_9395020 chr2R_9394199_9394298;chr2R_9395020_9395119 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 4.55 NA NA 12.50 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA K alternative_donor pgant6 chr3L + chr3L_2782497_2782737;chr3L_2782414_2782737 chr3L_2782556_2782737 chr3L_2782738_2783472;chr3L_2782330_2782413 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_last_exon ird1 chr3R - chr3R_5068175_5068554 chr3R_5068423_5068554 chr3R_5067541_5068174 chr3R_5068252_5068422 chr3R_5068555_5068768 0.00 4.55 0.00 0.00 0.00 0.00 0.00 4.76 2.78 0.00 0.00 3.33 14.29 0.00 5.00 6.25 0.00 7.14 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 3.57 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 K intron_retention Pvr,I_chr2L_8226604_8228082,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8226604_8227651 chr2L_8226603_8226604;chr2L_8227651_8227652 chr2L_8226504_8226603;chr2L_8227652_8227658 96.82 92.86 95.83 100.00 92.86 100.00 91.67 96.77 94.74 100.00 NA 92.45 96.67 100.00 100.00 100.00 100.00 100.00 96.88 98.18 100.00 NA 95.24 100.00 93.33 88.89 96.15 NA NA 100.00 93.75 NA 100.00 93.75 100.00 94.44 100.00 91.67 94.12 100.00 NA 97.78 93.33 100.00 NA 91.67 91.67 94.12 98.18 90.00 96.00 100.00 NA 100.00 100.00 100.00 NA 88.89 K jcn_only_AD Pp2A-29B,I_chr2L_8367210_8367311,I_chr2L_8369561_8369715 chr2L + chr2L_8366124_8367095 chr2L_8366395_8367095 chr2L_8367096_8367209;chr2L_8366118_8366123 100.00 100.00 100.00 98.75 99.67 100.00 100.00 99.52 99.88 100.00 100.00 99.68 100.00 100.00 99.76 99.84 100.00 99.70 100.00 99.87 100.00 100.00 99.79 100.00 99.67 100.00 99.79 100.00 100.00 100.00 99.35 99.49 100.00 100.00 100.00 100.00 99.76 100.00 99.34 99.81 100.00 99.86 99.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907784_9908424;chr2L_9908142_9908424 chr2L_9907848_9908424 chr2L_9908425_9908505;chr2L_9907756_9907783 8.86 8.70 8.57 13.46 15.38 9.52 14.29 8.86 10.81 14.29 8.00 13.51 13.33 8.51 11.11 8.45 10.20 6.98 8.77 8.79 10.71 10.00 3.80 4.08 7.32 4.88 7.94 11.54 7.89 8.62 11.43 12.00 13.24 9.41 4.76 4.62 9.62 9.30 8.51 9.46 7.69 9.47 3.70 8.33 18.18 5.00 8.57 10.71 8.00 11.11 11.27 10.26 9.38 4.55 6.78 8.57 10.00 7.89 K intron_retention eater chr3R - chr3R_22925222_22925280 chr3R_22925221_22925222;chr3R_22925280_22925281 chr3R_22925154_22925221;chr3R_22925281_22925345 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.62 0.00 5.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 N alternative_donor tefu,I_chr3R_11060517_11060585 chr3R - chr3R_11064906_11065001 chr3R_11064906_11064956 chr3R_11064882_11064905;chr3R_11065002_11065118 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 K intron_retention granny-smith,I_chr3R_8776241_8784793,I_chr3R_8782481_8782663,I_chr3R_8792471_8792881 chr3R - chr3R_8776050_8776129 chr3R_8776049_8776050;chr3R_8776129_8776130 chr3R_8775770_8776049;chr3R_8776130_8776240 0.00 0.00 0.00 2.48 0.00 0.00 0.00 0.91 0.93 0.00 0.00 1.70 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.32 0.00 0.00 0.00 4.07 0.00 0.00 0.00 1.43 0.62 0.00 0.65 0.00 0.00 0.00 0.91 0.46 0.73 0.93 0.00 0.00 0.88 1.05 0.61 0.75 0.00 0.00 0.00 0.00 0.70 0.00 1.98 0.00 1.13 1.42 K multi_cassette bip2,RI_chr4_481674_482028,RI_chr4_481674_487126,RI_chr4_482358_482702,RI_chr4_483128_487126,RI_chr4_483144_483680,RI_chr4_486609_487126 chr4 - chr4_481674_487126 chr4_481674_482130;chr4_482955_483013;chr4_483128_483680;chr4_485367_487126 chr4_482131_482954;chr4_483014_483127;chr4_483681_485366 chr4_481574_481673;chr4_487127_487226 100.00 88.89 100.00 93.33 85.71 100.00 100.00 100.00 96.43 100.00 100.00 90.00 100.00 100.00 91.67 87.50 91.67 83.33 93.75 89.47 100.00 100.00 100.00 88.89 100.00 100.00 88.89 100.00 80.00 100.00 77.78 100.00 80.00 96.00 100.00 100.00 100.00 100.00 100.00 84.62 80.00 100.00 91.67 100.00 100.00 100.00 87.50 100.00 100.00 100.00 92.31 83.33 80.00 100.00 100.00 100.00 77.78 100.00 K alternative_acceptor Amph,I_chr2R_8498227_8498492 chr2R + chr2R_8498227_8498513 chr2R_8498227_8498492 chr2R_8498127_8498226;chr2R_8498514_8498592 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.96 2.44 3.23 1.82 2.86 0.00 0.00 0.00 0.00 0.00 7.14 3.33 4.17 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.35 K jcn_only_AD RI_chr3R_5165997_5180143,CG33936,I_chr3R_5167726_5180143,R_chr3R_5168211_5180143,RI_chr3R_5168214_5168297,I_chr3R_5168617_5180143,snoRNA:Me18S-G1358a,RI_chr3R_5183458_5183705 chr3R + chr3R_5167726_5180143 chr3R_5168214_5180143 chr3R_5180144_5180232;chr3R_5167626_5167725 99.43 99.28 99.32 99.04 100.00 99.22 99.72 100.00 99.37 100.00 100.00 100.00 99.45 99.53 99.26 99.66 99.37 100.00 99.43 99.56 98.77 98.33 99.37 100.00 100.00 100.00 99.32 97.96 100.00 100.00 97.80 100.00 97.44 99.47 98.81 100.00 97.22 99.13 98.31 99.00 98.04 98.94 99.34 99.10 100.00 100.00 100.00 100.00 99.72 99.05 99.34 100.00 100.00 98.28 99.48 99.09 99.16 100.00 K jcn_only_AA CG31873 chr2L + chr2L_10270395_10270448 chr2L_10270395_10270440 chr2L_10270274_10270394;chr2L_10270449_10271235 3.71 0.00 0.00 5.88 NA 10.34 2.94 2.27 6.56 NA NA 6.15 NA 4.17 3.12 4.08 NA 0.00 4.17 3.85 NA NA 25.00 0.00 NA NA 3.85 0.00 NA 7.14 21.43 8.33 0.00 3.03 NA NA 8.33 4.00 4.76 3.23 5.71 0.00 3.57 0.00 NA 0.00 8.33 9.38 0.00 NA 2.38 NA 0.00 NA 3.03 NA 0.00 3.92 K intron_retention CG8184,I_chrX_15620707_15620769 chrX + chrX_15617191_15617265 chrX_15617190_15617191;chrX_15617265_15617266 chrX_15617180_15617190;chrX_15617266_15618411 93.89 91.84 97.67 98.57 94.12 89.74 98.15 93.22 93.62 92.59 89.19 96.55 97.44 95.00 91.49 88.46 96.55 91.67 92.50 92.78 94.12 96.30 94.38 95.45 94.64 98.08 92.19 83.33 93.83 95.40 94.00 97.67 93.89 89.61 92.31 96.43 91.00 87.93 93.18 91.92 96.23 93.41 96.67 93.94 87.88 96.67 88.57 94.86 97.06 96.67 92.19 97.62 88.57 94.44 91.84 94.29 93.75 90.54 K intron_retention MRP,I_chr2L_12727117_12729243,F_chr2L_12727117_12736035 chr2L + chr2L_12728799_12737958 chr2L_12728798_12728799;chr2L_12737958_12737959 chr2L_12728578_12728798;chr2L_12737959_12738176 100.00 NA NA 90.91 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA NA 94.74 100.00 NA 95.00 100.00 NA NA 93.75 100.00 NA 90.00 NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 91.67 NA 100.00 100.00 NA NA NA NA NA NA K jcn_only_AD nuf,RI_chr3L_14222180_14223121,RI_chr3L_14209985_14223275,CG7768,noncoding_12540,RI_chr3L_14213037_14218534,I_chr3L_14214604_14218530,I_chr3L_14222054_14222918,I_chr3L_14224426_14225035 chr3L + chr3L_14219504_14223275;chr3L_14223207_14223275 chr3L_14206304_14223275 chr3L_14223276_14223369 2.50 2.78 NA NA NA NA NA 0.00 0.00 9.09 NA 4.00 NA NA 0.00 NA NA NA NA 0.00 NA 6.67 7.55 4.55 4.76 NA 0.00 0.00 4.65 0.00 0.00 NA 12.00 NA NA NA 5.36 5.71 0.00 0.00 0.00 0.00 NA 2.50 NA 6.25 4.55 5.00 0.00 2.33 0.00 3.12 0.00 4.76 NA 0.00 2.50 14.29 K intron_retention I_chr2L_100704_100835,CG11377 chr2L + chr2L_102907_103005 chr2L_102906_102907;chr2L_103005_103006 chr2L_102395_102906;chr2L_103006_103434 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 K intron_retention yki chr2R - chr2R_19954778_19954987 chr2R_19954777_19954778;chr2R_19954987_19954988 chr2R_19954686_19954777;chr2R_19954988_19955750 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 K alternative_donor CG31278,noncoding_15893,RI_chr3R_6533509_6533568 chr3R - chr3R_6533509_6533568;chr3R_6533509_6533960 chr3R_6533509_6533579 chr3R_6533409_6533508;chr3R_6533961_6534040 88.46 88.24 93.33 96.30 85.71 100.00 94.12 90.00 85.71 60.00 87.50 80.77 90.00 85.71 84.21 92.86 100.00 88.89 93.75 89.29 84.62 88.89 76.19 80.95 87.50 94.44 66.67 94.44 95.45 92.31 65.31 100.00 93.33 86.36 77.78 85.00 84.62 86.96 90.00 78.95 100.00 92.31 90.91 82.35 100.00 90.00 86.96 84.62 90.62 80.95 88.46 83.33 85.00 82.35 93.75 86.96 93.94 93.10 K jcn_only_AD Crk,RI_chr4_231302_233315,RI_chr4_231307_231369,RI_chr4_231307_232217,I_chr4_231307_232253 chr4 + chr4_231302_232215 chr4_231307_232215 chr4_232216_232420;chr4_231208_231301 100.00 93.10 100.00 96.70 NA 100.00 100.00 97.71 94.23 100.00 96.55 100.00 100.00 97.14 97.56 98.70 97.73 96.97 96.88 97.18 95.45 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 NA 95.00 NA 96.67 100.00 98.78 100.00 100.00 100.00 97.14 100.00 98.96 98.81 100.00 100.00 100.00 NA NA 98.51 100.00 100.00 99.12 K alternative_donor I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545799_17545855;chr2R_17545781_17545855;chr2R_17545686_17545855 chr2R_17545615_17545855 chr2R_17545856_17545985;chr2R_17545613_17545614 41.67 40.00 69.23 70.37 73.33 80.95 50.00 75.00 63.64 0.00 60.00 73.91 71.43 69.23 80.00 70.59 81.82 73.91 66.67 77.78 84.62 12.50 0.00 16.67 20.00 69.23 20.00 0.00 11.11 20.00 64.29 25.00 33.33 69.57 NA NA 0.00 33.33 28.57 30.77 12.50 76.19 78.57 0.00 52.38 9.09 20.00 36.36 70.83 25.00 0.00 25.00 50.00 20.00 83.33 20.00 22.22 41.67 K jcn_only_AD Best1,I_chr3R_5991957_5995913,RI_chr3R_5993184_5995905 chr3R - chr3R_5989579_5990296;chr3R_5989579_5990440 chr3R_5989579_5990058 chr3R_5988921_5989578;chr3R_5990441_5990683 2.05 1.42 2.00 0.75 0.98 2.17 3.77 2.04 2.27 0.00 1.23 0.00 1.11 2.75 2.40 2.50 1.30 2.70 3.12 0.46 4.21 8.45 2.72 2.99 3.57 1.35 2.05 0.00 4.65 0.98 6.87 6.25 4.82 1.31 2.11 0.00 2.08 2.05 1.53 2.03 0.00 0.41 0.00 2.65 3.16 3.50 0.00 2.38 3.95 2.91 5.45 1.92 0.00 1.75 0.94 2.22 2.90 0.00 K alternative_acceptor CG9776 chr3R - chr3R_158200_158713 chr3R_158583_158713 chr3R_158714_158881;chr3R_158012_158199 7.81 5.71 5.00 3.12 6.25 3.33 10.00 4.69 7.81 7.69 6.90 5.33 16.67 13.79 7.14 22.73 6.90 0.00 19.05 7.58 7.41 8.89 3.30 10.00 9.38 9.52 9.52 3.70 6.25 10.81 18.18 13.64 12.24 8.33 8.11 7.69 7.55 6.90 8.89 17.50 3.57 8.75 7.69 9.68 6.25 10.71 6.90 9.09 8.06 12.12 6.90 16.67 2.78 13.04 8.82 9.68 7.41 2.70 K multi_cassette Nedd4,I_chr3L_17534504_17535990,I_chr3L_17535485_17536604,I_chr3L_17536186_17536604,I_chr3L_17536813_17536863 chr3L + chr3L_17535485_17536604 chr3L_17535485_17535689;chr3L_17535913_17535990;chr3L_17536063_17536604 chr3L_17535690_17535912;chr3L_17535991_17536062 chr3L_17535417_17535484;chr3L_17536605_17536704 77.28 75.00 80.00 NA NA NA 85.71 NA 87.50 81.82 NA 92.31 NA NA NA 83.33 NA NA NA 100.00 NA 55.56 60.00 80.00 80.00 NA 70.00 80.00 60.00 72.73 100.00 62.50 78.57 100.00 66.67 NA 90.91 85.71 88.89 65.22 57.14 71.43 NA 56.25 71.43 70.00 75.00 76.00 80.00 62.50 60.00 75.00 NA NA NA 100.00 NA 81.82 K intron_retention CG12393,CG9135 chr2L + chr2L_6048126_6048511 chr2L_6048125_6048126;chr2L_6048511_6048512 chr2L_6048106_6048125;chr2L_6048512_6048626 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG7843,I_chr2R_1972736_1972822 chr2R - chr2R_1971513_1972012 chr2R_1971513_1971673 chr2R_1971446_1971512;chr2R_1972013_1972292 12.24 10.42 8.16 15.07 11.36 10.87 12.94 11.43 12.17 13.04 8.11 8.79 15.00 14.29 12.90 12.35 10.53 10.87 9.84 9.89 9.52 9.52 13.85 8.93 17.14 3.61 14.81 15.79 14.71 16.22 40.66 19.23 13.21 13.04 11.76 20.00 10.87 16.67 8.51 13.16 17.65 9.65 18.60 22.92 12.00 10.42 10.00 14.75 12.24 9.26 14.52 11.76 12.00 12.50 15.49 11.63 4.69 13.21 K intron_retention RI_chrX_11473566_11473702,roX2,noncoding_23149,I_chrX_11475074_11475402 chrX + chrX_11473433_11473485 chrX_11473432_11473433;chrX_11473485_11473486 chrX_11473419_11473432;chrX_11473486_11473561 77.71 NA NA 88.89 NA NA 100.00 78.95 75.00 NA NA 75.00 70.00 NA NA 71.43 NA NA 88.89 78.95 NA NA NA 71.43 90.00 NA 92.31 NA NA NA 71.43 50.00 NA 93.33 88.89 NA NA NA NA 86.96 NA 66.67 NA 75.00 NA 68.75 NA NA 73.33 NA 88.89 87.50 NA NA 76.47 NA NA NA K intron_retention CG16718,E_chr3R_15462172_15464824,RI_chr3R_15464150_15464400,EI_chr3R_15465136_15466705 chr3R - chr3R_15463694_15463747 chr3R_15463693_15463694;chr3R_15463747_15463748 chr3R_15463573_15463693;chr3R_15463748_15463916 0.00 0.00 0.00 0.00 0.00 2.78 5.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 14.00 10.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.89 0.00 0.00 0.00 3.51 NA 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD bon chr3R + chr3R_16433390_16433716 chr3R_16433396_16433716 chr3R_16433717_16433800;chr3R_16432003_16433389 63.64 64.58 59.09 54.55 53.57 80.00 64.29 71.88 66.13 60.71 NA 59.38 56.00 62.07 52.17 61.11 72.00 65.52 53.33 65.67 69.57 50.91 64.18 62.22 51.28 NA 69.39 63.64 76.47 61.54 NA 45.45 66.67 70.83 46.67 59.57 61.70 66.67 58.14 33.33 NA 78.85 73.91 66.07 72.73 43.48 57.50 70.97 60.38 78.95 60.71 73.08 64.10 51.52 68.75 64.52 NA NA K intron_retention CG8202 chr3R + chr3R_4559713_4559769 chr3R_4559712_4559713;chr3R_4559769_4559770 chr3R_4559430_4559712;chr3R_4559770_4560080 0.00 0.00 0.00 0.00 0.00 NA 4.08 4.65 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K jcn_only_AD Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_150069_150307;chr4_150069_150180;chr4_150069_150353;chr4_150069_150295;chr4_150069_150205 chr4_150069_150378 chr4_149969_150068;chr4_150379_150379 0.00 NA NA 0.00 0.00 0.00 2.44 1.23 0.00 NA NA 0.00 0.00 0.00 0.00 1.67 0.00 4.76 0.00 0.00 NA NA NA NA NA 3.85 NA NA NA NA 0.00 NA NA 1.30 NA NA NA NA NA NA NA 1.75 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K jcn_only_AA CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806425_22807258;chr3R_22806425_22807235;chr3R_22806425_22807254 chr3R_22806425_22809684 chr3R_22806325_22806424 4.75 3.01 2.88 3.92 4.49 5.49 3.25 3.76 3.14 4.17 2.50 2.61 6.77 1.71 4.20 2.77 3.80 9.92 2.42 7.21 4.28 6.06 8.33 5.00 2.33 1.22 7.69 NA 13.04 18.75 2.67 14.58 18.25 2.88 4.55 9.57 17.65 8.33 7.89 5.38 10.87 2.13 2.93 2.63 8.06 17.46 8.70 10.29 3.35 5.00 8.02 9.76 6.19 4.94 2.35 4.41 15.89 4.35 K intron_retention CG9667 chr3R - chr3R_3951888_3951950 chr3R_3951887_3951888;chr3R_3951950_3951951 chr3R_3951727_3951887;chr3R_3951951_3951964 0.00 NA 0.00 12.50 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 K intron_retention Arp87C chr3R + chr3R_8519484_8519551 chr3R_8519483_8519484;chr3R_8519551_8519552 chr3R_8518937_8519483;chr3R_8519552_8520017 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.07 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon Ntf-2,I_chrX_20906749_20909772 chrX + chrX_20907665_20909772 chrX_20907665_20908636 chrX_20909773_20914328 chrX_20908637_20909021 chrX_20907566_20907664 4.44 1.47 3.08 3.23 4.65 3.70 6.25 3.06 6.30 7.14 4.17 5.71 3.70 3.57 5.71 4.08 4.65 8.06 3.28 4.58 3.92 11.36 3.66 3.95 2.33 3.45 5.88 14.04 10.64 3.64 5.63 5.00 5.33 4.26 5.66 7.27 5.80 5.17 2.94 6.60 6.06 5.36 2.08 4.84 7.50 3.85 5.63 4.84 5.83 4.30 3.85 4.44 2.90 1.14 4.23 4.44 2.04 2.44 K jcn_only_AA CG9526,I_chr2L_6457114_6457365,I_chr2L_6457278_6457337 chr2L + chr2L_6457114_6457365 chr2L_6457114_6457337 chr2L_6457014_6457113;chr2L_6457366_6457437 100.00 100.00 100.00 99.18 100.00 100.00 100.00 100.00 100.00 97.30 100.00 98.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.86 98.90 96.92 100.00 100.00 100.00 100.00 99.06 96.92 97.53 98.68 98.40 100.00 100.00 100.00 97.53 100.00 98.65 99.12 98.77 100.00 100.00 100.00 100.00 99.03 100.00 97.48 100.00 98.25 98.91 100.00 NA 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Fmr1,I_chr3R_5934794_5935190,I_chr3R_5934794_5935245,I_chr3R_5934801_5935537 chr3R - chr3R_5934794_5935537 chr3R_5934794_5935190 chr3R_5934701_5934793;chr3R_5935538_5935637 0.65 0.88 1.72 1.06 0.00 2.11 0.00 0.59 1.31 1.32 0.00 1.63 0.00 0.00 2.05 0.00 0.00 1.56 1.05 0.86 0.00 0.70 0.52 0.71 0.00 0.69 0.00 0.00 0.00 0.85 3.51 3.12 3.26 1.16 1.15 0.98 0.54 0.85 0.00 0.00 0.00 0.47 0.00 0.71 0.00 1.28 0.00 0.00 1.38 0.00 0.63 1.09 1.82 0.00 0.66 NA 0.00 0.00 K intron_retention Rpt3 chrX + chrX_11019540_11019597 chrX_11019539_11019540;chrX_11019597_11019598 chrX_11019456_11019539;chrX_11019598_11020848 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.29 0.00 0.00 0.38 1.13 0.00 0.40 0.57 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Liprin-alpha chr2L + chr2L_6727323_6727862 chr2L_6727335_6727862 chr2L_6727863_6728780;chr2L_6727194_6727322 40.26 29.73 37.50 39.13 47.62 35.29 32.65 48.98 40.26 38.46 48.39 43.75 45.45 31.71 40.00 38.33 29.63 46.67 45.95 40.51 38.24 46.88 37.29 38.46 42.86 34.78 44.44 26.67 46.43 42.86 35.56 55.00 44.44 44.62 47.06 36.84 37.50 44.44 38.89 44.71 34.38 45.57 48.15 30.56 41.38 40.43 38.71 37.86 47.13 30.43 36.73 45.16 31.58 43.75 34.55 46.15 27.27 48.89 K intron_retention MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17389985_17394799 chr2R_17389984_17389985;chr2R_17394799_17394800 chr2R_17389891_17389984;chr2R_17394800_17394826 6.90 NA NA 0.00 NA NA 3.85 6.67 6.90 NA NA NA NA 15.38 NA 0.00 NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA 12.50 NA 7.69 NA NA NA NA NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2395659 chrX_2388671_2389073;chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2395659 chrX_2389074_2389271;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2388641_2388670;chrX_2395660_2395759 20.00 NA NA NA NA NA NA NA 0.00 NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG10353,I_chrX_11775936_11778830,I_chrX_11778617_11778830,RI_chrX_11780885_11780988 chrX - chrX_11775936_11778830;chrX_11775936_11780988 chrX_11775936_11777220;chrX_11777655_11778830,chrX_11777655_11780988 chrX_11777221_11777654 chrX_11775836_11775935;chrX_11780989_11781085 97.83 100.00 97.92 92.54 100.00 100.00 96.72 100.00 98.33 95.83 97.44 97.71 100.00 100.00 98.15 97.83 98.00 97.67 100.00 96.58 100.00 95.83 97.18 98.41 95.06 97.67 95.29 96.97 96.51 93.98 98.11 96.43 95.86 97.75 98.55 94.12 99.40 97.58 98.05 94.12 89.87 97.76 97.44 95.60 98.06 95.74 98.59 95.35 100.00 98.61 97.98 98.25 98.82 98.36 98.00 97.50 100.00 100.00 K alternative_last_exon CG42533,F_chr2L_7476906_7476978,noncoding_1625 chr2L - chr2L_7483628_7495512 chr2L_7492227_7495512 chr2L_7483511_7483627 chr2L_7491821_7492226 chr2L_7495513_7495618 0.00 0.00 NA 6.67 NA NA 11.11 0.00 6.67 NA NA 6.25 7.69 0.00 0.00 7.14 NA NA 10.00 6.67 NA 0.00 0.00 NA NA NA NA NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 4.35 NA 0.00 NA NA NA 0.00 5.88 NA 12.50 NA NA NA 0.00 NA NA NA K jcn_only_AA CG4699 chr3R + chr3R_11624127_11624445 chr3R_11624127_11624442 chr3R_11623809_11624126;chr3R_11624446_11624758 68.35 58.62 68.18 80.49 71.43 NA NA 80.00 71.88 76.00 NA 60.61 NA NA 65.38 80.95 NA NA NA 67.92 NA 68.00 78.57 63.16 68.18 NA 64.29 62.22 57.45 60.53 70.00 80.65 68.35 78.12 69.57 59.52 73.91 72.41 83.67 NA 72.73 56.52 NA 72.22 59.57 58.62 NA 68.35 83.33 70.97 66.67 NA 61.29 NA 50.00 71.88 70.00 57.89 K intron_retention Sur-8 chr3R - chr3R_13225324_13227032 chr3R_13225323_13225324;chr3R_13227032_13227033 chr3R_13225253_13225323;chr3R_13227033_13227098 0.65 0.67 0.95 1.87 0.65 0.00 0.00 0.70 0.45 0.00 0.00 0.90 0.00 0.00 1.33 0.50 0.53 1.26 1.14 0.85 0.00 1.81 1.68 0.00 0.00 2.60 2.03 3.38 3.95 0.00 0.00 1.98 0.38 0.79 1.13 1.26 0.79 0.00 1.62 0.80 2.50 0.51 1.40 0.40 3.20 1.54 0.00 0.61 0.62 0.00 1.13 0.00 0.00 0.00 0.48 0.74 0.00 0.00 K jcn_only_AD tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5960163;chr3R_5959310_5960101;chr3R_5959310_5960041;chr3R_5959310_5959789;chr3R_5959310_5960049;chr3R_5959310_5960026;chr3R_5959310_5960158;chr3R_5959310_5959679 chr3R_5959310_5960182 chr3R_5958937_5959309;chr3R_5960183_5960224 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.05 0.00 0.00 NA NA NA 0.00 0.00 0.00 1.82 0.00 0.00 0.00 NA 0.00 1.08 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 K intron_retention I_chr2R_5999081_6000140,E_chr2R_6001157_6001630,CG11866 chr2R + chr2R_6005374_6005536 chr2R_6005373_6005374;chr2R_6005536_6005537 chr2R_6005198_6005373;chr2R_6005537_6006047 7.11 9.09 6.25 6.78 15.00 11.11 33.33 8.00 10.42 NA 0.00 6.06 0.00 0.00 11.36 8.96 0.00 13.64 7.32 8.62 4.35 17.86 4.65 2.44 0.00 3.33 11.63 15.15 36.84 0.00 8.57 6.90 15.09 6.38 11.63 6.25 9.09 6.25 3.92 10.00 21.43 5.00 13.79 5.26 8.33 8.82 0.00 11.76 8.82 3.45 10.42 12.00 4.17 5.00 3.03 3.12 0.00 6.45 K intron_retention CG8001 chr3L + chr3L_1758655_1758715 chr3L_1758654_1758655;chr3L_1758715_1758716 chr3L_1758414_1758654;chr3L_1758716_1759208 0.00 0.00 0.00 0.00 0.00 4.55 0.00 2.38 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 NA 0.00 0.00 0.00 0.00 0.00 4.00 NA 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor I_chr3L_9707724_9708265,CG14174 chr3L + chr3L_9712522_9712613 chr3L_9712522_9712585 chr3L_9712316_9712521;chr3L_9712614_9713636 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA 92.86 NA NA NA 88.89 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA 87.50 NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA 100.00 100.00 K intron_retention Hrb98DE,RI_chr3R_24429041_24431183,RI_chr3R_24430202_24430258 chr3R + chr3R_24429421_24429782 chr3R_24429420_24429421;chr3R_24429782_24429783 chr3R_24429330_24429420;chr3R_24429783_24429985 3.70 4.25 1.59 8.87 3.12 4.50 4.52 5.91 4.45 3.33 1.80 6.27 5.93 4.18 4.01 4.60 2.88 5.11 4.19 3.88 0.00 2.29 4.01 3.67 5.24 2.62 3.05 5.68 4.14 2.82 2.21 3.03 2.28 4.13 3.29 4.65 5.65 2.92 4.15 3.24 2.36 3.47 4.24 2.42 2.48 3.46 1.98 3.70 4.26 2.61 3.92 3.43 5.03 2.54 4.07 3.21 3.11 5.22 K intron_retention del chr2L - chr2L_21146886_21146948 chr2L_21146885_21146886;chr2L_21146948_21146949 chr2L_21145134_21146885;chr2L_21146949_21147823 33.69 26.32 30.00 56.76 28.57 33.33 40.62 35.56 36.84 NA 25.00 40.54 29.17 45.00 44.00 36.54 35.71 31.25 43.33 27.08 11.76 33.33 38.71 29.17 22.22 31.58 28.12 44.44 22.73 47.62 35.29 33.33 33.33 41.46 33.33 63.16 25.93 33.33 30.00 35.48 45.45 40.54 47.06 33.33 43.75 30.00 40.00 43.75 34.04 14.29 31.03 19.05 NA NA 39.39 41.18 31.58 46.15 K alternative_donor CG18317,RI_chr2L_1718492_1723881 chr2L - chr2L_1718492_1718674;chr2L_1718492_1718695 chr2L_1718492_1718739 chr2L_1718421_1718491;chr2L_1718740_1718903 4.17 4.76 10.26 2.63 0.00 3.03 6.82 6.52 5.88 2.38 4.17 2.82 0.00 0.00 2.94 0.00 0.00 0.00 0.00 1.96 3.57 10.45 3.23 8.51 5.88 3.70 4.76 2.82 10.34 12.07 10.53 1.69 4.76 3.70 11.11 10.00 1.27 6.98 3.90 8.40 3.92 9.46 5.00 4.11 6.25 8.06 2.27 5.59 1.56 5.13 3.92 4.76 2.94 5.88 2.70 4.65 5.56 4.17 K intron_retention v(2)k05816,CG3523 chr2L + chr2L_3055314_3055376 chr2L_3055313_3055314;chr2L_3055376_3055377 chr2L_3055262_3055313;chr2L_3055377_3055409 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA K intron_retention CrebB-17A,I_chrX_18261213_18269281,I_chrX_18265640_18266039,I_chrX_18265640_18266060,I_chrX_18265982_18266063 chrX + chrX_18265640_18266063 chrX_18265639_18265640;chrX_18266063_18266064 chrX_18265540_18265639;chrX_18266064_18266139 13.16 15.15 6.12 16.28 5.71 5.26 15.09 14.71 13.95 6.67 9.68 9.09 5.56 12.50 8.93 13.33 14.29 6.82 20.00 15.19 7.14 38.46 13.89 16.22 13.64 15.22 9.52 14.81 21.21 5.26 13.79 9.09 13.95 16.92 13.33 53.12 13.16 9.76 8.33 25.00 7.50 8.82 11.11 9.09 13.79 21.62 10.00 12.73 7.92 18.42 18.92 19.35 12.50 17.65 8.20 8.82 5.26 8.16 K intron_retention pAbp,I_chr2R_14027838_14028996 chr2R + chr2R_14032403_14032471 chr2R_14032402_14032403;chr2R_14032471_14032472 chr2R_14030918_14032402;chr2R_14032472_14032779 0.00 0.14 0.00 0.07 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.13 0.00 0.00 0.10 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 1.90 0.00 0.00 0.10 0.00 0.00 0.15 0.00 0.00 0.10 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 N cassette CG42574,I_chr3R_618802_618939,I_chr3R_621543_625413,I_chr3R_621546_625413 chr3R - chr3R_620787_625413;chr3R_621546_625413 chr3R_621546_622210,chr3R_620787_622210;chr3R_622790_625413 chr3R_622211_622789 chr3R_618940_620786;chr3R_625414_625513 52.63 60.00 43.94 77.14 45.83 46.15 39.66 51.06 54.14 52.63 40.91 73.17 22.00 54.76 57.41 53.45 53.19 52.78 47.83 77.78 40.00 67.97 54.46 62.92 62.64 31.15 53.64 61.17 44.64 52.63 46.05 42.31 42.36 50.49 46.91 64.80 60.85 54.74 57.05 52.17 34.21 52.31 51.52 40.58 64.52 51.43 54.76 40.00 54.63 52.38 49.54 44.62 58.82 54.55 50.00 56.67 58.33 51.85 K alternative_acceptor tan,R_chr3L_6048520_6048578,R_chr3L_6048608_6048676 chr3L + chr3L_6048520_6048689 chr3L_6048520_6048676 chr3L_6048508_6048519;chr3L_6048690_6048763 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 88.89 100.00 NA 100.00 NA 91.67 NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA 100.00 K alternative_donor CG8709,I_chr2R_4027128_4027182,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4029534_4029603 chr2R_4029534_4029599 chr2R_4029434_4029533;chr2R_4029604_4029699 0.00 0.00 0.00 1.37 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 1.43 1.75 0.00 0.00 2.99 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 3.37 1.19 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 2.47 K intron_retention cact,RI_chr2L_16314859_16315116,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16323518_16324332 chr2L_16323517_16323518;chr2L_16324332_16324333 chr2L_16323418_16323517;chr2L_16324333_16324900 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629579_2629913;chr3L_2629585_2629913;chr3L_2629684_2629913;chr3L_2629527_2629913;chr3L_2629597_2629913 chr3L_2629613_2629913 chr3L_2629914_2629921;chr3L_2629427_2629526 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG18094,swm,I_chr2L_19497233_19497284 chr2L + chr2L_19497090_19497159 chr2L_19497089_19497090;chr2L_19497159_19497160 chr2L_19496961_19497089;chr2L_19497160_19497232 1.04 1.35 0.00 6.74 0.00 0.00 0.00 0.00 2.40 2.27 0.00 2.44 0.00 2.50 1.61 0.00 0.00 0.00 0.00 0.00 4.65 3.87 1.53 1.00 4.11 0.00 6.25 6.86 11.36 1.04 0.00 5.33 0.83 0.00 1.59 3.53 2.40 2.17 0.00 3.68 3.37 0.00 0.00 1.03 3.48 0.00 0.00 3.15 0.00 2.27 1.77 1.49 1.05 0.00 0.00 1.02 0.00 2.60 K multi_cassette bip2,RI_chr4_481674_482028,RI_chr4_481674_487126,RI_chr4_482358_482702,RI_chr4_483128_487126,RI_chr4_483144_483680,RI_chr4_486609_487126 chr4 - chr4_481674_487126 chr4_481674_482130;chr4_482955_483013;chr4_483128_487126 chr4_482131_482954;chr4_483014_483127 chr4_481574_481673;chr4_487127_487226 100.00 94.44 100.00 97.37 92.31 100.00 100.00 100.00 98.28 100.00 100.00 94.87 100.00 100.00 95.83 94.00 96.00 91.67 97.06 94.87 100.00 100.00 100.00 94.44 100.00 100.00 94.12 100.00 88.89 100.00 87.88 100.00 88.89 98.04 100.00 100.00 100.00 100.00 100.00 91.30 88.89 100.00 95.83 100.00 100.00 100.00 93.75 100.00 100.00 100.00 95.83 90.91 88.89 100.00 100.00 100.00 87.50 100.00 K intron_retention CEI_chrX_17177009_17196871,CG5445,I_chrX_17196752_17196871,RI_chrX_17196772_17196871,I_chrX_17196820_17196875,I_chrX_17198393_17198730 chrX + chrX_17196786_17196871 chrX_17196785_17196786;chrX_17196871_17196872 chrX_17196720_17196785;chrX_17196872_17196971 90.00 92.86 92.31 100.00 NA 100.00 91.67 92.86 96.00 NA NA 95.00 NA NA 88.89 94.74 90.00 90.00 91.67 84.00 77.78 NA 86.67 71.43 77.78 87.50 83.33 92.86 76.47 91.67 85.71 NA 90.00 94.12 88.89 100.00 87.50 70.00 92.86 82.35 NA 95.24 70.00 91.67 100.00 93.33 78.57 88.89 85.71 84.62 100.00 88.89 100.00 88.89 92.31 88.89 75.00 72.73 K intron_retention Gp150,I_chr2R_18205316_18205386,I_chr2R_18213233_18213308 chr2R + chr2R_18205282_18205386 chr2R_18205281_18205282;chr2R_18205386_18205387 chr2R_18205216_18205281;chr2R_18205387_18205459 92.86 96.30 100.00 96.30 90.48 85.71 95.21 94.55 93.44 92.31 84.00 94.74 96.00 94.29 88.89 89.47 96.43 94.74 91.89 91.55 95.65 71.43 96.83 95.00 100.00 97.50 97.47 100.00 93.33 91.67 96.55 NA 100.00 88.68 88.46 96.00 90.48 87.10 90.48 87.88 100.00 88.14 90.48 90.00 NA 92.86 92.86 76.92 90.91 95.24 91.84 84.62 100.00 90.00 97.44 92.31 93.75 81.82 K jcn_only_AD kis,RI_chr2L_242745_242800,I_chr2L_242926_250756 chr2L - chr2L_242745_250756 chr2L_242745_242800 chr2L_242645_242744;chr2L_250757_250774 5.50 4.76 2.44 9.52 9.52 NA 21.43 0.00 6.25 NA NA 8.33 13.51 3.45 3.57 8.33 0.00 0.00 7.14 0.00 NA 28.00 0.00 NA NA 7.14 NA NA NA NA 3.33 NA 2.63 8.33 NA NA 12.00 NA NA 0.00 NA 6.90 4.35 NA NA NA NA 0.00 7.69 NA NA 0.00 NA NA 7.14 NA NA NA K alternative_donor prel chr2R + chr2R_5311931_5312043 chr2R_5311966_5312043 chr2R_5312044_5312420;chr2R_5311837_5311930 96.00 97.62 95.00 97.73 90.91 89.74 95.65 95.65 94.83 96.43 95.83 98.31 96.88 95.65 97.62 97.14 96.67 94.44 94.74 98.18 88.00 97.22 92.73 94.64 93.55 97.06 97.92 97.06 85.71 93.33 95.00 93.75 90.57 96.08 93.94 97.22 100.00 89.58 92.73 96.88 100.00 98.36 89.29 97.30 97.56 96.00 97.30 97.62 93.65 93.48 93.10 96.97 96.30 96.77 90.24 97.37 97.06 92.73 K alternative_acceptor CG3907,I_chr2R_19907866_19907906,I_chr2R_19909065_19909249,I_chr2R_19909692_19909755 chr2R - chr2R_19907845_19907906 chr2R_19907866_19907906 chr2R_19907907_19908006;chr2R_19907766_19907844 1.27 0.00 4.40 2.98 1.33 1.32 0.00 1.04 1.55 0.00 1.32 1.32 1.41 1.12 0.00 3.88 2.44 0.00 0.00 1.27 2.27 0.00 1.23 2.35 3.85 0.98 2.00 2.70 0.00 0.00 0.81 1.20 2.25 1.28 0.00 0.00 0.00 1.72 0.00 1.75 0.00 1.42 1.33 0.00 0.90 0.00 0.00 2.35 3.23 2.86 0.00 1.47 0.00 0.00 1.80 1.30 0.72 1.61 K intron_retention CG32174,CG33052 chr3L - chr3L_17422404_17422476 chr3L_17422403_17422404;chr3L_17422476_17422477 chr3L_17422351_17422403;chr3L_17422477_17422528 0.00 0.00 0.00 0.00 0.00 3.70 14.29 0.00 4.55 0.00 NA 4.17 NA NA 0.00 0.00 0.00 14.29 0.00 6.45 NA 0.00 0.00 0.00 0.00 6.25 3.70 NA 4.76 0.00 0.00 13.79 2.63 0.00 5.56 14.29 8.33 0.00 5.26 7.41 0.00 0.00 NA 0.00 5.26 7.69 4.08 4.00 2.94 0.00 0.00 NA 0.00 0.00 0.00 0.00 5.26 3.70 K alternative_donor slgA,I_chrX_21253735_21253820 chrX + chrX_21245849_21247146;chrX_21245487_21247146 chrX_21245768_21247146 chrX_21247147_21247693;chrX_21245405_21245486 14.84 NA NA NA NA NA NA 14.29 9.09 NA NA 15.38 NA 18.18 NA 25.00 NA NA NA 9.09 NA NA NA NA NA NA NA NA NA NA 7.69 NA NA 30.77 NA NA NA NA NA NA NA 8.33 NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA K intron_retention CG16941 chr3R - chr3R_12827296_12827356 chr3R_12827295_12827296;chr3R_12827356_12827357 chr3R_12825833_12827295;chr3R_12827357_12827528 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 4.76 0.00 0.00 0.00 0.00 10.00 5.56 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789740_9789790 chr2L_9789739_9789740;chr2L_9789790_9789791 chr2L_9789733_9789739;chr2L_9789791_9789832 19.62 NA 25.00 17.95 NA NA 25.00 24.14 34.38 NA NA 19.23 NA NA 25.00 NA NA NA 6.67 0.00 NA 14.29 NA NA NA NA 57.14 NA NA NA 10.53 NA NA 15.79 NA NA NA NA NA 18.18 NA 20.00 38.46 7.14 NA NA NA 14.29 20.00 NA 50.00 50.00 NA NA 19.05 NA NA NA K intron_retention Sec16,I_chrX_12501913_12502010,I_chrX_12502899_12502973 chrX + chrX_12502899_12502967 chrX_12502898_12502899;chrX_12502967_12502968 chrX_12502799_12502898;chrX_12502968_12503669 13.87 10.53 18.75 8.22 15.62 24.14 16.95 14.29 14.10 14.58 12.00 13.79 20.45 20.00 20.37 15.79 21.43 10.53 13.56 8.24 6.98 7.55 16.28 5.56 14.29 28.57 30.00 12.82 13.95 10.14 10.26 14.75 12.64 10.39 20.00 12.20 5.00 19.05 9.76 11.11 26.32 13.48 13.33 15.09 5.48 12.39 7.41 10.42 18.18 13.33 15.38 19.05 0.00 NA 14.52 14.29 14.29 11.57 K jcn_only_AA CG14438 chrX + chrX_6653928_6654023 chrX_6653928_6654020 chrX_6653906_6653927;chrX_6654024_6654243 90.62 NA NA NA NA NA NA 91.67 85.00 NA NA 89.47 NA NA NA NA NA NA NA 96.97 NA NA NA NA NA NA NA NA NA 95.83 NA NA NA 90.62 84.62 85.00 NA NA 81.82 90.00 NA 100.00 NA NA NA NA NA 95.65 93.94 NA NA NA NA NA NA NA NA NA K intron_retention Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3294714 chr2R_3294565_3294566;chr2R_3294714_3294715 chr2R_3294491_3294565;chr2R_3294715_3294736 95.65 100.00 95.00 100.00 91.67 90.91 95.00 95.65 96.77 NA 92.86 92.31 88.24 100.00 100.00 96.55 92.31 94.44 94.12 97.44 93.75 100.00 94.74 94.74 100.00 86.36 90.91 100.00 95.45 92.86 100.00 93.33 100.00 93.33 100.00 100.00 100.00 81.25 95.45 95.65 100.00 100.00 80.00 88.24 100.00 94.12 NA 96.43 95.83 100.00 93.75 100.00 100.00 100.00 92.86 100.00 100.00 94.74 K jcn_only_AA CG16700,I_chrX_16989598_16989917 chrX + chrX_16989598_16990317 chrX_16989598_16989917 chrX_16989498_16989597;chrX_16990318_16990678 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention l(1)G0196,I_chrX_21900456_21904601 chrX + chrX_21898150_21898215 chrX_21898149_21898150;chrX_21898215_21898216 chrX_21897878_21898149;chrX_21898216_21898384 36.84 40.00 NA 57.14 NA NA 31.58 46.15 32.00 NA NA 29.41 NA NA 15.79 43.75 NA NA 36.84 12.50 NA 75.00 70.59 50.00 NA 60.00 68.42 NA NA NA 33.33 NA NA 40.00 NA NA 25.00 NA NA 38.46 NA 30.43 NA 35.71 NA 30.77 NA NA 34.78 NA 61.11 NA NA NA 23.08 NA NA NA K alternative_donor CG15814,I_chrX_17743744_17743940 chrX - chrX_17744102_17744321 chrX_17744102_17744245 chrX_17743941_17744101;chrX_17744322_17744390 40.00 45.45 45.95 41.30 35.90 33.33 63.16 47.37 35.42 38.89 42.50 48.21 46.15 41.18 42.50 56.82 40.00 46.43 44.74 38.38 37.50 40.74 37.70 40.00 40.54 46.15 48.39 25.00 38.10 32.43 43.48 39.39 34.21 52.27 38.46 46.88 32.26 34.00 33.33 39.58 38.89 32.50 46.88 50.00 31.82 39.13 35.90 34.48 42.35 53.12 42.50 33.33 40.00 42.31 27.08 37.50 41.03 26.09 K intron_retention cher,I_chr3R_12943024_12948119 chr3R - chr3R_12930114_12930178 chr3R_12930113_12930114;chr3R_12930178_12930179 chr3R_12929978_12930113;chr3R_12930179_12930631 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.28 0.22 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.64 0.43 0.00 0.00 0.00 1.00 1.63 3.00 0.00 0.00 0.00 0.27 0.00 0.00 0.40 0.00 0.00 0.00 0.35 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.61 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention cmet chr2L - chr2L_11262561_11262616 chr2L_11262560_11262561;chr2L_11262616_11262617 chr2L_11262506_11262560;chr2L_11262617_11262751 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Trn chr3L + chr3L_6186644_6187147 chr3L_6186723_6187147 chr3L_6187148_6187250;chr3L_6186603_6186643 96.00 90.00 100.00 100.00 88.89 100.00 96.00 95.65 92.50 NA 100.00 100.00 100.00 92.86 93.75 95.65 100.00 84.62 92.31 95.45 90.91 90.91 100.00 NA NA 100.00 NA NA NA 100.00 86.67 NA NA 100.00 NA NA 100.00 NA NA 100.00 NA 96.00 90.91 85.71 NA NA NA 100.00 91.30 NA NA NA NA NA 100.00 NA NA NA K jcn_only_AA Klc,I_chr3L_12741779_12743062,I_chr3L_12741783_12742943,I_chr3L_12741838_12743062 chr3L - chr3L_12741779_12743062;chr3L_12741838_12743062 chr3L_12741783_12743062 chr3L_12743063_12743083;chr3L_12741738_12741778 97.73 99.22 97.04 97.75 98.41 100.00 96.06 99.21 97.73 94.74 97.44 96.94 98.29 97.18 98.60 96.25 97.20 97.67 97.75 96.55 98.78 98.24 98.24 98.00 95.45 91.20 95.56 100.00 96.34 95.24 97.33 98.61 94.23 98.86 100.00 98.10 100.00 98.89 99.14 97.64 95.83 97.56 98.40 97.97 95.31 98.68 95.81 95.56 96.39 97.58 99.35 98.40 100.00 97.26 100.00 98.56 97.60 96.63 K intron_retention F_chr2L_15260838_15261717,cul-3 chr2L - chr2L_15271144_15271833 chr2L_15271143_15271144;chr2L_15271833_15271834 chr2L_15270905_15271143;chr2L_15271834_15271894 4.30 9.09 7.32 3.23 3.03 0.00 3.41 2.47 7.37 NA 0.00 4.60 6.52 7.32 5.88 11.84 4.65 2.63 3.45 9.09 2.56 7.41 3.92 4.17 4.00 0.00 6.12 11.76 5.26 0.00 2.56 NA 4.76 6.74 5.41 7.14 0.00 6.45 0.00 4.44 7.69 7.87 2.56 6.52 0.00 9.09 0.00 3.70 3.19 3.33 0.00 2.86 NA 0.00 7.27 8.00 9.09 0.00 K intron_retention Vrp1,I_chr2R_17997529_17997692 chr2R - chr2R_18009700_18009836 chr2R_18009699_18009700;chr2R_18009836_18009837 chr2R_18009606_18009699;chr2R_18009837_18010031 100.00 100.00 100.00 98.08 100.00 100.00 100.00 98.21 100.00 100.00 95.24 98.25 100.00 100.00 100.00 98.00 100.00 96.15 100.00 98.08 100.00 100.00 100.00 97.06 100.00 100.00 100.00 96.00 100.00 96.00 100.00 94.44 100.00 97.96 96.67 100.00 96.88 100.00 97.62 100.00 100.00 96.55 95.65 96.30 100.00 100.00 94.74 97.37 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 95.00 97.22 K alternative_donor Bet1,noncoding_13463 chr3L + chr3L_19254708_19254812 chr3L_19254756_19254812 chr3L_19254813_19255421;chr3L_19254489_19254707 19.30 16.98 8.93 20.59 18.60 20.00 26.83 30.65 16.67 15.38 21.05 18.29 21.05 21.05 22.95 19.30 17.14 22.50 21.62 21.19 22.22 15.73 12.20 17.07 23.40 16.95 20.59 14.29 18.75 28.00 19.61 16.90 28.57 19.05 23.91 14.81 17.74 15.52 18.42 18.52 31.25 18.82 21.88 12.07 20.83 24.53 23.08 25.76 17.07 13.92 18.57 17.24 14.29 22.39 20.97 20.31 10.29 23.75 K alternative_donor Sply chr2R - chr2R_12979029_12979314 chr2R_12979029_12979298 chr2R_12978864_12979028;chr2R_12979315_12979407 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 6.25 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor MB8.chr3R.pasa.66,Alh,I_chr3R_2924206_2924272,I_chr3R_2927820_2933442,RI_chr3R_2946518_2946663 chr3R - chr3R_2924206_2924276 chr3R_2924206_2924272 chr3R_2924106_2924205;chr3R_2924277_2924372 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.00 NA NA 0.00 NA NA 16.67 NA NA 0.00 NA 2.33 NA 4.35 0.00 5.26 NA NA 4.35 7.14 NA NA NA NA 0.00 5.00 NA NA 2.33 0.00 0.00 0.00 NA 2.94 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.55 0.00 K alternative_donor CG33298 chr2L + chr2L_9519480_9519719 chr2L_9519535_9519719 chr2L_9519720_9520654;chr2L_9519394_9519479 1.43 0.00 5.00 0.00 0.00 0.00 3.57 0.00 2.02 0.00 2.70 3.28 2.00 3.77 0.00 1.54 0.00 0.00 0.00 1.43 2.38 3.66 5.00 0.00 0.00 5.26 0.00 0.00 8.33 0.00 3.23 4.55 3.12 2.27 0.00 4.76 2.56 0.00 0.00 3.28 0.00 4.17 0.00 0.00 0.00 5.88 3.23 0.00 3.03 5.56 2.94 0.00 0.00 0.00 0.00 2.94 0.00 2.70 K cassette Rala,noncoding_21767 chrX - chrX_3604282_3613395 chrX_3604282_3610504;chrX_3610701_3613395 chrX_3610505_3610700 chrX_3604102_3604281;chrX_3613396_3613464 17.24 20.00 25.53 15.38 14.08 21.15 7.59 25.69 21.05 10.45 31.43 13.40 16.33 24.00 18.75 20.00 31.91 14.29 23.64 22.43 30.77 22.22 16.67 19.28 11.63 17.24 7.14 3.85 13.51 13.21 18.00 17.07 8.96 25.00 23.81 5.88 23.68 14.55 17.14 15.56 8.11 21.32 26.67 13.33 10.91 18.64 17.31 14.29 20.49 23.26 17.81 14.29 13.04 18.52 24.64 16.00 11.84 14.29 K intron_retention tra2,psnoRNA:tra2-a,REFI_chr2R_10491644_10491701 chr2R - chr2R_10490382_10490665 chr2R_10490381_10490382;chr2R_10490665_10490666 chr2R_10490009_10490381;chr2R_10490666_10490794 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 4.35 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 7.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 4.35 0.00 0.00 8.70 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA eIF-1A chr3R + chr3R_14100479_14100588;chr3R_14100479_14100566 chr3R_14100479_14100547 chr3R_14100417_14100478;chr3R_14100589_14100702 1.33 1.33 0.73 1.16 1.13 1.42 1.47 1.62 0.90 3.10 1.38 1.51 3.03 0.51 1.57 0.65 1.04 1.23 1.06 0.55 0.90 0.84 0.99 2.01 1.22 4.24 1.05 1.62 4.38 3.70 1.01 0.00 0.60 1.45 1.24 0.35 1.72 1.82 1.39 3.07 4.08 1.62 1.96 4.55 1.28 1.85 1.01 5.00 1.15 2.13 1.46 1.21 0.49 0.96 0.61 1.60 0.58 3.73 K intron_retention CG34133,F_chr3R_25696884_25696960 chr3R + chr3R_25700056_25700132 chr3R_25700055_25700056;chr3R_25700132_25700133 chr3R_25699927_25700055;chr3R_25700133_25700289 0.00 2.86 1.28 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 2.20 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention pyd,I_chr3R_4654041_4664113,I_chr3R_4749124_4756437 chr3R - chr3R_4654041_4654556 chr3R_4654040_4654041;chr3R_4654556_4654557 chr3R_4653941_4654040;chr3R_4654557_4655281 7.89 6.12 NA 21.62 17.65 0.00 24.14 19.44 10.23 5.56 NA 16.67 NA 33.33 8.70 24.00 11.11 10.00 31.25 11.29 25.00 1.04 6.87 7.89 8.06 NA 8.93 4.12 1.72 4.76 19.05 11.76 4.00 13.95 7.41 3.28 5.98 2.56 6.00 13.79 4.92 10.61 5.88 5.19 2.75 4.29 2.63 9.26 17.78 5.75 5.88 8.11 4.76 0.00 25.93 2.75 3.17 8.89 K intron_retention CG32032 chr3L + chr3L_9086412_9086719 chr3L_9086411_9086412;chr3L_9086719_9086720 chr3L_9086163_9086411;chr3L_9086720_9086830 0.36 0.00 0.52 0.72 1.04 0.00 0.00 0.36 0.41 1.27 0.00 0.74 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.27 0.00 1.11 0.68 0.65 1.68 0.00 0.36 0.00 0.00 0.00 2.89 0.57 0.00 1.09 1.64 3.95 0.33 0.40 0.64 0.57 2.11 0.82 0.00 0.41 0.00 0.32 1.29 0.66 0.52 0.00 0.68 0.00 0.00 0.47 0.00 0.86 0.00 0.00 K intron_retention CG31650,I_chr2L_5041540_5041687,RI_chr2L_5041540_5041697,RI_chr2L_5041540_5042490,I_chr2L_5042888_5042983,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5041540_5042490 chr2L_5041539_5041540;chr2L_5042490_5042491 chr2L_5041440_5041539;chr2L_5042491_5042590 10.53 NA NA 10.53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21309092_21309945;chr2L_21309092_21309994;chr2L_21309092_21309579;chr2L_21309092_21309938 chr2L_21309092_21310000 chr2L_21308992_21309091;chr2L_21310001_21310009 2.38 NA 0.00 3.85 6.25 NA 7.69 0.00 2.04 5.56 4.35 2.56 0.00 5.56 0.00 4.35 NA NA 0.00 1.72 0.00 4.35 0.00 0.00 NA 5.56 0.00 6.67 3.12 NA 4.76 9.09 0.00 3.85 7.14 0.00 NA 0.00 0.00 2.38 NA 0.00 NA 0.00 0.00 5.88 NA 2.56 2.38 NA NA 0.00 NA NA 4.17 NA NA NA K intron_retention CG5515,I_chr3R_20017846_20017911,I_chr3R_20018643_20018703 chr3R - chr3R_20014480_20014554 chr3R_20014479_20014480;chr3R_20014554_20014555 chr3R_20014392_20014479;chr3R_20014555_20014564 30.09 NA NA 41.18 NA NA 30.77 40.00 28.57 NA 25.00 41.18 NA NA 36.36 36.36 NA NA 35.29 21.74 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA 29.41 NA NA NA NA NA NA NA 22.73 NA NA NA NA NA NA 23.08 NA NA NA NA NA 17.65 NA NA 5.26 K intron_retention CG3402 chr3L - chr3L_652277_652443 chr3L_652276_652277;chr3L_652443_652444 chr3L_651523_652276;chr3L_652444_652572 1.54 0.00 3.42 6.36 0.00 1.46 4.73 4.95 2.18 2.00 1.54 2.20 6.45 2.48 2.48 2.86 1.85 2.48 3.31 1.84 0.00 2.33 0.91 0.95 2.40 3.60 1.15 2.70 1.32 0.68 2.72 0.00 0.45 2.34 0.56 2.14 0.00 0.48 0.45 0.45 0.68 1.79 3.45 1.01 0.24 0.71 2.33 0.52 3.20 0.00 0.51 0.78 0.00 1.88 1.47 0.00 2.27 0.00 K intron_retention RI_chr3L_5801924_5803389,mad2 chr3L - chr3L_5805754_5805814 chr3L_5805753_5805754;chr3L_5805814_5805815 chr3L_5805548_5805753;chr3L_5805815_5805961 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 1.20 0.00 0.00 1.25 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.86 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 1.72 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG13760 chrX - chrX_2478582_2478699 chrX_2478636_2478699 chrX_2478700_2478968;chrX_2478496_2478581 12.24 24.44 10.53 11.94 17.14 11.11 13.21 19.30 13.82 12.20 14.29 12.50 13.64 14.71 4.41 13.51 9.68 16.67 14.29 10.17 5.26 11.67 12.20 8.97 5.88 18.18 8.33 10.34 4.35 4.76 14.89 25.00 20.27 10.77 13.95 12.28 6.19 22.58 3.23 17.46 17.65 11.36 2.94 17.07 16.42 11.25 9.43 20.41 3.70 14.81 8.33 12.00 NA 10.77 16.67 7.55 15.69 18.18 K intron_retention eIF-4E,RI_chr3L_9394054_9394756,I_chr3L_9394308_9394756,RI_chr3L_9394468_9394631,I_chr3L_9394468_9394659,I_chr3L_9394468_9395155,I_chr3L_9394468_9395240,I_chr3L_9394468_9395446,I_chr3L_9394685_9394756,RI_chr3L_9394707_9395016,RI_chr3L_9394707_9395198,I_chr3L_9394707_9395309,I_chr3L_9394819_9394884,I_chr3L_9394819_9395016,I_chr3L_9394819_9395198,I_chr3L_9394819_9395379 chr3L - chr3L_9394468_9395379 chr3L_9394467_9394468;chr3L_9395379_9395380 chr3L_9394368_9394467;chr3L_9395380_9395409 29.66 26.98 42.86 48.65 48.15 30.56 42.72 27.27 40.14 37.50 25.58 41.59 16.25 27.27 28.07 29.51 35.29 30.95 26.03 33.04 22.92 61.11 33.33 30.00 20.00 28.26 45.00 39.02 37.50 42.55 25.42 21.74 37.84 28.97 26.39 22.86 46.30 30.77 33.33 32.56 18.37 29.66 22.64 42.31 20.00 23.08 22.99 22.03 27.74 33.33 32.91 37.74 23.88 21.69 23.19 26.09 30.85 21.30 K intron_retention CG11125 chr2R + chr2R_3336447_3336498 chr2R_3336446_3336447;chr2R_3336498_3336499 chr2R_3336292_3336446;chr2R_3336499_3336920 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.77 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention stj chr2R + chr2R_9704207_9704259 chr2R_9704206_9704207;chr2R_9704259_9704260 chr2R_9704067_9704206;chr2R_9704260_9704484 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.32 3.92 1.52 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 K intron_retention aPKC,I_chr2R_10833552_10833654,RI_chr2R_10849347_10850391 chr2R - chr2R_10833552_10833654 chr2R_10833551_10833552;chr2R_10833654_10833655 chr2R_10833496_10833551;chr2R_10833655_10833754 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 96.97 NA NA 96.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 95.00 100.00 90.91 100.00 92.86 100.00 100.00 90.91 NA NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 88.89 100.00 90.00 95.45 90.91 90.00 90.00 100.00 NA 90.91 100.00 100.00 92.31 100.00 NA NA 100.00 100.00 100.00 100.00 K intron_retention RpL15 chr3LHet + chr3LHet_2398060_2398127 chr3LHet_2398059_2398060;chr3LHet_2398127_2398128 chr3LHet_2398050_2398059;chr3LHet_2398128_2398454 98.45 97.46 96.38 98.17 97.44 96.72 98.29 97.56 99.24 97.78 97.66 99.10 98.45 98.98 95.43 98.68 98.36 94.87 96.45 97.00 96.61 99.52 98.92 98.98 99.13 98.64 98.91 98.86 100.00 98.96 98.85 98.99 99.38 95.95 98.28 100.00 99.23 100.00 100.00 97.83 97.75 97.40 96.10 100.00 96.58 99.10 100.00 98.20 96.39 99.23 100.00 100.00 95.12 97.50 97.65 100.00 99.46 93.33 N jcn_only_AD rdgA chrX + chrX_8916273_8918293 chrX_8918171_8918293 chrX_8918294_8918451 38.46 NA NA NA NA NA NA NA 34.62 NA NA NA NA NA NA NA NA NA NA 38.46 NA 57.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N multi_cassette PMCA,RI_chr4_370306_371228,I_chr4_371836_372509,I_chr4_373671_374568,I_chr4_376108_379519 chr4 - chr4_371317_372509 chr4_371317_371390;chr4_371836_372211;chr4_372454_372509 chr4_371391_371835;chr4_372212_372453 chr4_371229_371316;chr4_372510_372609 100.00 100.00 100.00 86.23 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG13795,F_chr2L_7724518_7724568 chr2L - chr2L_7725250_7725309 chr2L_7725249_7725250;chr2L_7725309_7725310 chr2L_7725161_7725249;chr2L_7725310_7725473 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA NA NA 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 10.53 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA N alternative_last_exon mmd chrX - chrX_15852624_15856018;chrX_15848478_15856018 chrX_15854946_15856018 chrX_15852351_15852623;chrX_15848319_15848477 chrX_15854840_15854945 chrX_15856019_15856024 45.45 33.33 44.44 58.82 25.00 25.00 38.46 60.00 48.00 NA NA 30.77 28.57 41.67 26.67 53.33 45.45 72.73 46.67 50.00 57.14 NA NA NA NA 37.50 NA NA NA NA 22.22 NA NA 61.54 NA NA NA NA NA NA NA 50.00 50.00 NA NA NA NA NA 25.00 NA NA NA NA NA 46.15 NA NA NA K intron_retention RE_chr2R_18741940_18741998,RpL23 chr2R + chr2R_18742053_18742169 chr2R_18742052_18742053;chr2R_18742169_18742170 chr2R_18742003_18742052;chr2R_18742170_18742279 0.11 0.04 0.04 0.05 0.11 0.02 0.22 0.10 0.08 0.07 0.22 0.05 0.14 0.14 0.12 0.12 0.14 0.08 0.07 0.03 0.07 0.13 0.10 0.10 0.20 0.73 0.20 0.20 0.36 0.11 0.56 0.12 0.26 0.05 0.20 0.47 0.06 0.08 0.05 0.14 1.02 0.09 0.14 0.13 0.10 0.24 0.09 0.47 0.19 0.15 0.15 0.08 0.08 0.11 0.09 0.11 0.05 0.32 K alternative_acceptor l(2)NC136,I_chr2R_1545723_1546024 chr2R - chr2R_1549867_1549960 chr2R_1549882_1549960 chr2R_1549961_1550058;chr2R_1549732_1549866 100.00 100.00 100.00 100.00 100.00 92.59 100.00 98.70 98.78 90.91 96.55 98.08 100.00 100.00 97.30 98.84 100.00 100.00 98.11 100.00 100.00 100.00 100.00 94.74 100.00 100.00 96.30 94.12 100.00 100.00 100.00 100.00 100.00 98.81 100.00 100.00 94.74 100.00 100.00 98.36 94.44 98.53 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 94.12 88.89 100.00 98.00 100.00 100.00 96.67 K intron_retention gus,I_chr2R_1009158_1009345,RI_chr2R_1009158_1011540,I_chr2R_1009346_1015730 chr2R - chr2R_1009158_1009241 chr2R_1009157_1009158;chr2R_1009241_1009242 chr2R_1009058_1009157;chr2R_1009242_1009273 8.88 NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG6479 chr3L - chr3L_17331819_17331895 chr3L_17331837_17331895 chr3L_17331896_17332200;chr3L_17331559_17331818 100.00 90.91 100.00 96.30 94.44 100.00 100.00 88.89 96.55 100.00 94.12 96.97 100.00 100.00 100.00 100.00 93.33 100.00 91.67 97.06 88.89 90.62 100.00 89.66 100.00 100.00 96.67 100.00 100.00 95.45 100.00 100.00 92.31 100.00 100.00 100.00 93.33 90.00 97.37 98.04 100.00 97.14 100.00 96.30 100.00 100.00 94.12 100.00 100.00 100.00 92.86 90.91 100.00 93.75 94.74 92.31 100.00 100.00 K intron_retention CG9915 chrX - chrX_16205252_16205310 chrX_16205251_16205252;chrX_16205310_16205311 chrX_16204888_16205251;chrX_16205311_16205464 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 K jcn_only_AA vap,I_chrX_15897976_15899654,I_chrX_15898011_15899654,RI_chrX_15898427_15899654,I_chrX_15899237_15899654 chrX - chrX_15897976_15899654;chrX_15898427_15899654;chrX_15898011_15899654;chrX_15898478_15899654 chrX_15899510_15899654 chrX_15899655_15899705 73.06 NA NA NA NA NA 64.71 NA 72.22 NA NA 30.30 NA NA NA 50.00 NA NA NA 82.98 NA 82.35 66.67 NA 77.27 NA NA NA NA 75.00 55.17 NA NA 53.57 NA NA 85.00 NA 77.27 74.19 NA 51.35 NA 73.91 NA NA NA NA 40.00 NA NA 76.92 NA NA NA NA NA NA K jcn_only_AA msn,I_chr3L_2558033_2560115,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2558393_2560115;chr3L_2558390_2560115 chr3L_2558036_2560115 chr3L_2560116_2560215;chr3L_2557936_2558035 27.84 30.73 29.28 20.98 28.88 30.80 50.76 27.84 24.10 33.46 31.10 25.03 14.18 24.45 29.13 19.67 20.55 21.77 17.70 25.70 25.24 18.04 33.75 38.25 30.02 25.79 40.29 46.26 13.80 23.54 21.80 22.73 21.34 27.77 29.11 31.45 23.41 43.90 29.47 22.47 31.46 28.11 27.12 22.69 26.99 29.67 38.46 16.85 24.41 41.82 38.98 35.20 32.59 38.34 26.62 30.29 45.49 21.69 K intron_retention CG9669,RI_chr3L_16837963_16838041,RI_chr3L_16837988_16838041 chr3L - chr3L_16837963_16838019 chr3L_16837962_16837963;chr3L_16838019_16838020 chr3L_16837888_16837962;chr3L_16838020_16838062 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 8.33 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 0.00 3.08 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5385,CG5384 chr2L - chr2L_10311785_10311898 chr2L_10311784_10311785;chr2L_10311898_10311899 chr2L_10310996_10311784;chr2L_10311899_10312146 0.00 0.00 0.00 0.00 0.00 0.00 1.72 3.61 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 2.02 0.00 0.00 0.00 2.08 0.00 2.27 0.00 0.00 0.00 0.00 1.39 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 2.27 2.82 0.00 0.00 0.00 K jcn_only_AA hppy,I_chr2R_15066378_15066915,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15066378_15066881;chr2R_15066378_15067003 chr2R_15066378_15066915 chr2R_15066360_15066377;chr2R_15067004_15067015 2.38 3.85 NA NA NA NA 4.17 4.55 2.38 NA NA 0.00 NA NA NA 9.09 NA NA 4.35 0.00 NA 7.02 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.85 NA NA NA 0.00 NA 0.00 0.00 4.35 NA 3.77 NA 0.00 NA 1.32 NA NA 9.09 2.86 2.50 NA 2.27 3.85 NA NA 4.35 NA NA NA K intron_retention chic,RI_chr2L_5976783_5980950,I_chr2L_5979705_5980558,I_chr2L_5979705_5980632,I_chr2L_5979705_5980639,RI_chr2L_5979705_5980734 chr2L - chr2L_5980499_5980558 chr2L_5980498_5980499;chr2L_5980558_5980559 chr2L_5980443_5980498;chr2L_5980559_5980584 50.00 NA NA 56.25 NA NA 57.14 61.54 58.82 NA NA 40.91 NA NA NA 50.00 NA 50.00 87.50 33.33 NA 53.85 41.67 45.45 56.25 47.06 72.73 73.33 60.87 NA NA 41.67 59.26 53.33 39.13 73.68 46.67 60.00 NA 34.62 44.00 84.62 NA NA 44.83 33.33 NA 26.47 42.86 61.54 53.33 NA 37.50 NA NA NA 45.45 31.25 K intron_retention CG13085,REI_chr2L_19426699_19427208,I_chr2L_19426780_19427208,CG16771,I_chr2L_19426895_19427208,I_chr2L_19427121_19427208 chr2L + chr2L_19426808_19427208 chr2L_19426807_19426808;chr2L_19427208_19427209 chr2L_19426795_19426807;chr2L_19427209_19427308 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 90.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 91.67 NA NA NA 100.00 90.00 NA 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA K intron_retention MBD-R2 chr3R - chr3R_8179667_8179719 chr3R_8179666_8179667;chr3R_8179719_8179720 chr3R_8178336_8179666;chr3R_8179720_8179852 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor cnc,I_chr3R_19014852_19016555,I_chr3R_19014852_19016634,I_chr3R_19014852_19016738,I_chr3R_19046366_19046507,I_chr3R_19046619_19047567 chr3R - chr3R_19014852_19016744 chr3R_19014852_19016561 chr3R_19014752_19014851;chr3R_19016745_19016838 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 92.31 100.00 NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 K intron_retention CG7609,ATPsyn-gamma,I_chr3R_25574492_25574541 chr3R - chr3R_25574471_25574545 chr3R_25574470_25574471;chr3R_25574545_25574546 chr3R_25574392_25574470;chr3R_25574546_25574564 94.78 95.97 93.35 90.56 91.24 91.60 91.73 91.98 93.96 94.78 91.81 94.12 91.96 93.69 89.95 95.00 90.73 94.62 91.04 93.27 92.73 98.07 98.30 94.57 93.66 91.18 98.35 97.83 98.30 99.17 92.61 96.49 96.56 92.44 99.42 97.67 97.47 96.63 95.14 97.78 97.68 91.83 94.29 98.11 93.75 99.03 96.51 98.06 94.18 96.10 97.21 93.24 94.88 99.51 93.47 98.02 95.51 97.63 K jcn_only_AD Rheb,I_chr3R_1395050_1395121,CRMP chr3R + chr3R_1394994_1395121 chr3R_1395050_1395121 chr3R_1395122_1395193;chr3R_1394950_1394993 0.41 0.65 0.00 0.40 0.00 0.70 0.48 0.00 0.27 0.00 1.39 1.29 0.00 0.70 0.65 0.46 0.00 0.00 0.00 0.28 0.00 0.74 0.00 1.12 0.00 0.82 1.32 0.00 1.87 0.83 1.24 0.99 0.51 0.47 0.00 0.00 0.00 0.64 0.00 0.00 0.74 0.37 0.00 0.95 0.41 0.55 0.50 0.65 0.38 0.65 0.00 0.91 0.00 0.00 1.65 0.00 0.00 1.45 K intron_retention CG2182 chr3R - chr3R_1482294_1482520 chr3R_1482293_1482294;chr3R_1482520_1482521 chr3R_1481952_1482293;chr3R_1482521_1483654 0.00 0.00 0.00 1.56 0.00 0.00 1.37 2.26 0.96 0.00 0.00 1.26 2.60 0.00 1.96 0.00 0.00 0.00 1.01 1.20 0.00 0.00 0.00 1.03 1.67 0.00 1.09 0.57 0.00 0.00 0.00 0.00 0.00 1.60 1.22 1.80 0.36 0.50 0.43 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 1.76 0.49 0.48 0.79 0.00 0.00 3.03 0.46 0.00 0.00 K jcn_only_AA cic,RI_chr3R_16122222_16123529 chr3R + chr3R_16122222_16122818;chr3R_16122222_16124105 chr3R_16122222_16123529 chr3R_16122122_16122221;chr3R_16124106_16124254 0.00 0.00 0.00 0.00 0.00 0.88 1.97 0.00 0.00 0.00 0.00 0.35 0.00 0.97 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.89 0.00 0.59 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.65 0.38 0.00 0.00 0.49 0.00 0.00 0.00 1.43 2.22 0.87 0.00 0.54 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32230,RI_chr3L_23332465_23332529,RI_chr3L_23332577_23334556,RI_chr3L_23332781_23338942 chr3L + chr3L_23332465_23332529 chr3L_23332464_23332465;chr3L_23332529_23332530 chr3L_23332425_23332464;chr3L_23332530_23332576 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 98.97 100.00 100.00 100.00 NA 100.00 93.75 97.56 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA NA 100.00 NA NA 100.00 NA NA 100.00 NA 97.50 95.24 100.00 NA NA 100.00 NA 100.00 95.83 NA 100.00 NA NA 90.91 100.00 97.62 NA K intron_retention prominin-like,I_chr3L_3121200_3123087 chr3L - chr3L_3117257_3117345 chr3L_3117256_3117257;chr3L_3117345_3117346 chr3L_3117083_3117256;chr3L_3117346_3117402 0.70 0.79 0.66 2.76 0.28 0.62 3.42 1.53 0.91 0.00 0.38 0.79 0.34 1.01 0.54 0.69 0.56 0.66 0.61 1.05 0.67 1.44 1.13 0.79 0.42 2.02 1.51 6.62 0.94 0.83 1.29 0.00 0.72 0.66 0.00 0.45 0.70 0.35 0.92 1.07 1.01 0.70 0.00 1.32 0.65 1.32 0.30 1.84 0.35 0.00 0.50 0.00 1.88 0.00 0.94 0.42 1.17 2.27 K jcn_only_AA Sucb chr3L - chr3L_5555968_5556184 chr3L_5555972_5556184 chr3L_5556185_5556284;chr3L_5555387_5555967 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.24 100.00 100.00 99.05 97.96 100.00 98.75 98.72 100.00 100.00 100.00 98.51 98.21 98.04 100.00 100.00 100.00 100.00 100.00 100.00 98.67 98.36 96.83 100.00 100.00 98.82 96.15 98.46 100.00 96.15 98.77 99.41 98.88 99.21 100.00 98.81 100.00 100.00 100.00 98.92 99.12 100.00 100.00 100.00 98.00 100.00 100.00 100.00 97.87 95.38 K intron_retention Nedd4,I_chr3L_17532828_17532882,I_chr3L_17532828_17533787,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17532828_17533790 chr3L_17532827_17532828;chr3L_17533790_17533791 chr3L_17532728_17532827;chr3L_17533791_17533887 35.71 45.45 42.86 74.07 29.41 19.23 25.45 27.27 32.65 20.00 77.78 33.33 30.77 36.84 19.35 38.10 14.29 38.89 22.22 31.71 66.67 71.43 39.47 46.15 50.00 15.38 35.48 35.71 31.25 45.45 31.82 35.29 37.04 22.58 29.17 24.00 44.44 31.25 44.44 27.08 NA 37.14 NA 44.44 50.00 43.75 41.18 51.72 18.18 40.00 29.63 26.67 7.69 46.15 31.82 35.71 61.54 50.00 K intron_retention pcm chrX - chrX_19381101_19381164 chrX_19381100_19381101;chrX_19381164_19381165 chrX_19380438_19381100;chrX_19381165_19381745 0.00 6.25 0.00 NA NA NA NA NA 5.56 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 14.29 0.00 0.00 NA NA 0.00 NA 14.29 NA NA 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 3.45 0.00 5.56 0.00 0.00 0.00 0.00 0.00 NA 7.41 NA 0.00 0.00 16.67 K intron_retention caz,noncoding_24110,RI_chrX_16183147_16183258,RI_chrX_16183356_16185973 chrX + chrX_16183192_16183258 chrX_16183191_16183192;chrX_16183258_16183259 chrX_16183060_16183191;chrX_16183259_16183355 0.51 0.88 2.26 0.00 0.00 0.00 1.72 0.00 0.62 0.61 0.00 1.13 0.00 0.00 1.32 0.00 0.00 0.00 0.00 1.62 0.00 0.00 0.56 1.65 2.06 1.11 3.35 2.96 1.75 0.00 0.00 0.00 0.88 0.00 0.60 3.23 0.32 0.33 0.70 1.50 2.33 1.18 0.00 0.00 0.00 1.54 0.00 1.41 0.94 0.00 1.38 0.00 0.51 0.00 0.61 0.45 0.36 1.14 K intron_retention CG7843,I_chr2R_1972736_1972822 chr2R - chr2R_1972537_1972590 chr2R_1972536_1972537;chr2R_1972590_1972591 chr2R_1972352_1972536;chr2R_1972591_1972735 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.64 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG34394,I_chr2L_3365674_3365965 chr2L - chr2L_3367720_3367903 chr2L_3367720_3367850 chr2L_3367245_3367719;chr2L_3367904_3368056 2.33 3.03 2.90 3.92 2.70 2.70 5.00 4.92 1.18 2.33 0.00 3.66 0.00 5.71 0.00 1.89 0.00 0.00 2.50 2.44 0.00 2.78 0.00 0.00 3.03 0.00 2.56 5.77 16.28 4.00 3.39 4.76 1.67 0.00 2.70 0.00 3.57 0.00 0.00 1.54 0.00 2.00 0.00 1.82 3.85 0.00 2.94 1.85 2.47 0.00 2.38 0.00 0.00 0.00 4.44 2.63 0.00 2.50 K alternative_donor CG17508,RI_chr2R_1496995_1497120 chr2R + chr2R_1496288_1496517;chr2R_1496337_1496517;chr2R_1496303_1496517 chr2R_1496341_1496517 chr2R_1496518_1496994;chr2R_1496153_1496287 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention stj chr2R + chr2R_9701521_9701581 chr2R_9701520_9701521;chr2R_9701581_9701582 chr2R_9701446_9701520;chr2R_9701582_9701689 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 5.56 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Treh,I_chr2R_16972565_16972702,I_chr2R_16974505_16974557,I_chr2R_16975359_16975442,RI_chr2R_16975359_16975842,I_chr2R_16975364_16975842 chr2R + chr2R_16974443_16975285 chr2R_16974442_16974443;chr2R_16975285_16975286 chr2R_16974405_16974442;chr2R_16975286_16975358 50.00 38.10 39.13 51.22 58.33 43.48 61.54 66.67 50.00 77.78 NA 56.10 NA 64.29 65.00 59.09 55.56 35.71 28.57 45.45 36.36 56.76 48.48 45.45 46.15 60.00 48.00 81.82 68.00 36.36 55.56 51.43 58.97 50.00 52.63 54.17 35.00 41.38 35.29 48.89 48.84 48.78 54.55 46.88 52.83 44.64 34.62 62.30 51.28 80.00 42.11 53.33 50.00 39.29 44.00 24.32 36.11 40.79 K intron_retention RI_chr3L_707623_707678,CkIIalpha-i3,CG13896,RI_chr3L_711692_711744 chr3L - chr3L_711688_711746 chr3L_711687_711688;chr3L_711746_711747 chr3L_711592_711687;chr3L_711747_711763 97.22 NA NA NA NA NA 90.91 NA 94.44 NA NA NA 92.86 NA NA 100.00 NA 100.00 92.86 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA Sdc,I_chr2R_17286819_17367595,I_chr2R_17324594_17367595 chr2R - chr2R_17367884_17368518;chr2R_17368045_17368518 chr2R_17367862_17368518 chr2R_17368519_17368632;chr2R_17367596_17367861 88.14 NA NA 84.44 NA 100.00 85.71 88.68 87.10 NA NA 80.65 100.00 90.32 NA 89.06 NA NA 87.50 82.86 NA NA NA NA NA 72.41 NA NA 86.36 NA 91.49 NA NA 88.14 NA NA NA NA NA NA 85.71 95.12 85.71 NA NA 95.24 NA 96.77 81.94 NA NA NA NA NA 92.00 NA NA 92.00 K alternative_donor Fs(2)Ket,I_chr2L_20734991_20735252,I_chr2L_20735091_20735305,I_chr2L_20735170_20735252,I_chr2L_20738976_20749527 chr2L + chr2L_20735091_20735252;chr2L_20734991_20735252 chr2L_20735170_20735252 chr2L_20735253_20735352;chr2L_20734943_20734990 0.00 0.00 0.00 5.00 0.00 0.00 3.70 2.99 3.70 0.00 0.00 6.06 6.90 2.94 2.86 3.85 0.00 0.00 5.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 NA 0.00 1.64 0.00 0.00 6.25 0.00 0.00 4.17 NA 2.04 0.00 0.00 NA 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.38 K intron_retention Jupiter,I_chr3R_7417030_7419354,I_chr3R_7417630_7417716,I_chr3R_7418347_7445425,RI_chr3R_7442793_7445425 chr3R - chr3R_7417030_7419354 chr3R_7417029_7417030;chr3R_7419354_7419355 chr3R_7416930_7417029;chr3R_7419355_7419454 47.37 63.64 NA 5.70 NA NA 43.75 NA 52.63 NA NA 75.00 NA 50.00 NA NA NA NA NA 53.33 NA 6.90 41.67 60.00 NA NA NA NA 15.38 NA NA NA 16.67 NA NA NA NA 33.33 NA 54.55 25.00 50.00 NA NA NA 36.36 NA 47.37 43.75 NA 75.00 NA NA NA 66.67 NA NA NA K intron_retention CG42507,Trl,EI_chr3L_14750431_14750893,I_chr3L_14750431_14750985,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14750431_14750941 chr3L_14750430_14750431;chr3L_14750941_14750942 chr3L_14750331_14750430;chr3L_14750942_14750954 8.89 8.70 13.64 0.00 0.00 NA 10.53 14.81 9.52 10.53 6.67 8.33 10.53 5.88 0.00 8.33 13.33 0.00 15.00 7.84 0.00 7.69 7.89 5.00 11.54 6.25 3.23 38.46 24.24 7.41 4.17 17.65 12.07 16.67 6.45 12.90 6.90 8.70 0.00 13.11 11.54 9.52 7.69 16.67 9.09 15.38 14.29 17.19 12.50 9.38 8.33 12.90 7.14 6.25 18.52 7.14 0.00 12.77 K intron_retention dre4,I_chr3L_1875590_1875651,F_chr3L_1877432_1877517 chr3L - chr3L_1875587_1875651 chr3L_1875586_1875587;chr3L_1875651_1875652 chr3L_1875490_1875586;chr3L_1875652_1875751 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 2.79 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1663362_1663826 chr2R_1663361_1663362;chr2R_1663826_1663827 chr2R_1663235_1663361;chr2R_1663827_1664096 0.00 0.00 0.00 5.13 0.00 0.00 0.00 3.85 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1968 chr2R + chr2R_5175133_5175187 chr2R_5175132_5175133;chr2R_5175187_5175188 chr2R_5174501_5175132;chr2R_5175188_5175408 0.00 0.00 0.00 10.53 3.57 0.00 0.00 6.06 3.51 NA 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.77 0.00 0.00 4.00 0.00 NA 0.00 12.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261460_263795;chr4_261460_263891 chr4_261460_263086;chr4_263306_263891,chr4_263306_263795 chr4_263087_263305 chr4_261360_261459;chr4_263892_263991 97.56 94.44 94.74 100.00 91.67 94.74 100.00 96.15 98.08 NA 90.00 93.94 63.64 100.00 95.65 97.56 94.12 95.24 93.10 97.30 92.31 100.00 92.31 94.12 100.00 84.62 93.75 NA 83.33 100.00 96.15 100.00 100.00 97.83 90.91 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 88.89 96.88 90.91 100.00 100.00 K intron_retention RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,alpha4GT1,RI_chr2L_3022346_3022422,CG3605,CG17258 chr2L - chr2L_3022369_3022422 chr2L_3022368_3022369;chr2L_3022422_3022423 chr2L_3021309_3022368;chr2L_3022423_3022522 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Vha100-2 chr3R - chr3R_14219132_14222507 chr3R_14219132_14222434 chr3R_14218994_14219131;chr3R_14222508_14222727 36.36 NA NA 53.95 40.91 40.00 31.48 47.22 30.00 NA 56.52 34.62 20.00 34.38 43.75 30.23 44.12 46.43 41.46 37.04 46.67 35.71 39.47 50.00 NA 33.33 41.38 NA NA NA 18.52 NA 55.17 32.61 NA 32.00 NA NA 34.62 30.43 NA 45.59 25.93 NA NA NA NA NA 26.67 NA 18.18 NA 36.36 NA 32.26 NA 37.04 NA K alternative_last_exon CkIIbeta,I_chrX_11689220_11690898 chrX + chrX_11689220_11689764,chrX_11689220_11690898;chrX_11689220_11694025 chrX_11689220_11689633 chrX_11694026_11695678 chrX_11689634_11691961 chrX_11689138_11689219 81.25 80.36 78.46 64.71 76.19 81.25 68.75 83.06 81.21 71.88 85.42 77.78 65.28 84.13 77.59 79.41 82.35 81.48 81.58 73.03 89.13 80.00 86.11 82.46 77.14 74.47 77.36 81.25 86.27 86.54 72.46 88.75 90.29 81.65 75.47 85.71 86.79 85.19 80.00 89.47 85.07 78.95 78.18 80.65 84.75 85.86 76.27 89.62 83.59 80.00 79.10 81.25 81.82 76.00 80.30 77.36 84.51 87.97 K intron_retention Hrs,I_chr2L_2740474_2741107 chr2L + chr2L_2740474_2740519 chr2L_2740473_2740474;chr2L_2740519_2740520 chr2L_2740389_2740473;chr2L_2740520_2740784 0.00 0.00 0.00 5.68 0.00 3.85 5.13 0.00 2.50 NA 0.00 0.00 0.00 0.00 9.52 0.00 0.00 0.00 0.00 4.35 0.00 0.00 2.86 0.00 0.00 0.00 17.24 16.67 0.00 0.00 12.70 5.00 0.00 5.41 0.00 7.41 5.56 3.23 0.00 3.77 3.45 0.00 3.33 2.38 0.00 0.00 0.00 3.85 5.48 2.08 1.96 1.92 NA 0.00 5.88 0.00 3.45 0.00 K intron_retention CG6912 chr3R - chr3R_10962115_10962204 chr3R_10962114_10962115;chr3R_10962204_10962205 chr3R_10962052_10962114;chr3R_10962205_10962253 28.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA 21.43 NA K intron_retention SelD,I_chr2R_10157899_10158045 chr2R - chr2R_10157680_10158045 chr2R_10157679_10157680;chr2R_10158045_10158046 chr2R_10157642_10157679;chr2R_10158046_10158145 12.09 17.02 8.85 10.76 10.53 15.22 12.09 9.15 12.57 12.24 12.90 12.08 12.33 9.57 8.55 8.57 13.89 7.59 8.99 11.16 9.52 13.89 11.57 17.72 16.44 8.82 12.79 15.79 21.95 13.64 7.32 16.67 9.84 10.14 13.51 4.17 15.38 16.18 12.75 15.83 8.00 10.53 14.71 19.30 12.77 11.11 9.57 13.58 10.85 12.50 11.11 13.16 7.89 9.80 12.17 10.10 12.33 7.50 K jcn_only_AD vib,RI_chr3R_15051793_15051920,RI_chr3R_15051793_15052186 chr3R - chr3R_15051793_15051920;chr3R_15051793_15052202 chr3R_15051793_15052186 chr3R_15051737_15051792;chr3R_15052203_15052286 1.77 0.69 1.69 2.25 1.35 0.67 1.61 2.58 0.83 0.00 3.70 2.48 2.20 2.54 1.71 2.25 1.25 0.96 3.36 3.00 3.12 2.20 1.04 3.66 2.83 0.00 1.94 2.67 1.15 2.82 0.68 1.75 1.23 1.87 0.77 3.85 3.15 0.00 1.47 1.31 2.56 0.38 0.00 1.53 4.84 1.53 1.60 3.33 2.68 3.12 1.77 0.00 1.86 0.70 1.17 2.52 2.30 2.48 K intron_retention Haspin chr2RHet + chr2RHet_3215563_3234342 chr2RHet_3215562_3215563;chr2RHet_3234342_3234343 chr2RHet_3215287_3215562;chr2RHet_3234343_3234575 0.00 NA NA 0.00 NA NA 13.64 6.67 2.94 NA NA 5.56 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA 3.45 NA 0.00 12.50 0.00 NA NA 0.00 NA 13.04 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 N alternative_acceptor RI_chr3L_9408567_9410728,RpS17,I_chr3L_9422428_9422797,snoRNA:Psi28S-612 chr3L - chr3L_9422408_9422794 chr3L_9422426_9422794 chr3L_9422795_9422827;chr3L_9422328_9422407 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8186676_8186737 chr2L_8186675_8186676;chr2L_8186737_8186738 chr2L_8186314_8186675;chr2L_8186738_8186884 0.00 0.00 1.06 0.95 0.00 0.00 1.30 0.56 1.15 0.95 0.62 1.13 0.69 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.58 1.34 0.00 0.67 0.00 0.00 2.87 3.77 3.33 0.00 1.13 0.00 0.00 0.00 1.42 2.11 0.00 0.00 0.88 1.37 0.00 0.76 0.00 0.00 1.08 1.89 0.00 2.24 1.49 0.00 1.29 1.63 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Tif-IA,RI_chr2L_22250854_22257652 chr2L + chr2L_22253333_22253424;chr2L_22253333_22253386 chr2L_22253333_22253421 chr2L_22253256_22253332;chr2L_22253425_22253685 86.67 NA NA NA NA NA 80.39 77.27 87.88 NA NA 92.59 NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA 85.00 NA NA NA 90.24 NA NA 96.67 NA NA NA NA 76.19 NA NA 86.21 NA NA NA 95.45 NA NA 86.67 NA 85.71 NA NA NA NA NA NA NA K jcn_only_AD fs(1)h,I_chrX_7947328_7948140,I_chrX_7950171_7952371,I_chrX_7954192_7955240 chrX - chrX_7947328_7948155 chrX_7947328_7948140 chrX_7947228_7947327;chrX_7948156_7948240 3.03 2.67 2.22 6.78 3.08 2.67 3.80 5.11 1.64 1.92 3.45 1.36 22.39 4.62 2.80 6.94 4.84 4.35 1.41 1.94 9.23 1.41 6.31 2.97 4.26 0.94 1.20 1.72 10.96 5.61 4.00 NA 5.63 2.92 0.00 3.49 3.21 1.27 5.07 3.68 6.98 5.88 2.82 2.60 1.96 6.12 2.94 2.52 3.37 5.88 2.20 1.82 4.17 0.00 2.52 0.00 0.00 4.76 K intron_retention CG14782,noncoding_21360 chrX + chrX_1374893_1375040 chrX_1374892_1374893;chrX_1375040_1375041 chrX_1374745_1374892;chrX_1375041_1375343 72.73 79.17 67.26 86.02 61.73 74.51 79.71 69.13 62.90 69.74 66.29 72.40 60.00 78.05 72.73 72.48 67.53 71.56 70.27 69.71 67.39 94.14 82.73 77.69 76.60 78.91 76.06 71.52 73.61 76.07 80.95 67.15 66.67 72.15 78.07 78.46 74.79 74.44 71.01 62.28 76.32 71.24 73.17 54.64 70.79 73.09 75.48 66.03 69.40 75.25 83.65 78.49 71.65 82.73 73.44 81.29 70.47 55.19 K intron_retention msn,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2560296_2561931 chr3L_2560295_2560296;chr3L_2561931_2561932 chr3L_2560116_2560295;chr3L_2561932_2562031 13.48 13.89 25.93 28.26 33.33 17.39 37.50 32.50 24.21 10.26 30.00 10.62 NA 13.33 20.00 33.33 16.67 25.00 29.41 17.54 33.33 23.47 8.67 7.51 8.97 46.15 10.34 15.38 12.64 9.71 23.81 12.77 10.67 24.53 13.51 6.25 8.09 7.14 7.09 12.39 18.42 13.51 16.67 18.18 12.16 9.26 8.33 10.14 13.89 13.11 12.12 13.24 3.39 13.46 43.75 8.75 6.85 0.00 K intron_retention CG9674,I_chr3L_16785451_16785540,I_chr3L_16785706_16785748,I_chr3L_16793055_16800660 chr3L - chr3L_16784791_16784918 chr3L_16784790_16784791;chr3L_16784918_16784919 chr3L_16784681_16784790;chr3L_16784919_16785137 34.05 40.91 40.00 46.15 38.46 40.00 29.27 35.48 38.78 38.46 NA 25.00 33.33 34.78 29.17 55.00 43.75 16.67 45.45 32.56 NA 31.25 50.00 26.67 25.00 25.00 23.53 18.52 29.17 35.00 22.50 NA 56.25 32.00 46.67 NA 36.59 34.78 31.71 21.74 53.85 36.59 35.71 29.41 33.33 36.36 47.83 60.00 28.57 21.05 26.83 33.33 18.75 28.57 44.44 30.77 NA 69.23 K alternative_donor CG10664,REI_chr2L_19958910_19959266 chr2L + chr2L_19958765_19959266 chr2L_19958769_19959266 chr2L_19959267_19959366;chr2L_19958700_19958764 7.78 5.77 10.42 10.14 7.20 7.78 10.53 6.45 7.28 4.88 5.77 8.08 6.56 8.51 8.23 10.29 8.55 9.65 11.54 7.84 10.53 11.11 6.25 6.45 4.55 10.00 0.00 0.00 13.79 5.88 8.66 7.69 16.67 7.10 0.00 NA 5.62 3.33 9.43 0.97 15.38 7.27 7.89 2.27 8.43 8.33 2.94 10.00 9.55 5.71 2.04 4.44 6.56 NA 8.33 10.34 2.82 11.84 K jcn_only_AA CG17698 chr3L + chr3L_23739645_23740858;chr3L_23739645_23740972;chr3L_23739645_23741050 chr3L_23739645_23741523 chr3L_23739290_23739644 1.47 6.25 NA 8.77 0.00 4.35 2.60 1.47 3.00 NA NA 0.00 0.00 2.63 NA 4.29 0.00 NA 0.00 4.29 NA NA 0.00 0.00 NA 8.00 13.51 NA NA NA 3.33 NA NA 1.67 NA 10.00 NA 4.76 NA 0.00 NA 7.25 3.85 0.00 NA 0.00 NA NA 1.56 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA K jcn_only_AA CG15715,RI_chr3L_15829349_15830356,I_chr3L_15830026_15830356,RI_chr3L_15830030_15830191,RI_chr3L_15830229_15830356 chr3L - chr3L_15830026_15830356;chr3L_15830229_15830356 chr3L_15830030_15830356 chr3L_15830357_15830456;chr3L_15830007_15830025 97.12 100.00 96.67 92.56 97.44 94.44 91.86 99.14 96.61 94.74 97.22 97.90 92.16 98.57 95.88 96.12 98.21 85.71 96.34 97.78 97.78 96.30 97.17 97.12 98.36 93.94 98.92 98.15 92.11 100.00 100.00 100.00 97.67 98.54 100.00 98.53 96.49 93.83 91.55 95.60 94.12 100.00 96.97 96.92 94.44 94.12 98.41 97.44 95.81 98.70 98.92 94.34 93.83 94.19 100.00 95.19 98.29 98.98 K cassette CPTI,I_chr2R_6358255_6359122,RI_chr2R_6358779_6358944,I_chr2R_6360956_6365128 chr2R - chr2R_6358255_6359122;chr2R_6358779_6359122 chr2R_6358255_6358944,chr2R_6358779_6358944;chr2R_6359011_6359122 chr2R_6358945_6359010 chr2R_6358234_6358254;chr2R_6359123_6359222 0.00 0.00 0.00 1.14 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.04 0.00 1.54 5.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 1.52 0.00 0.00 4.35 0.00 1.82 1.79 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 1.82 0.00 0.00 2.17 0.00 2.50 0.00 0.00 0.00 K intron_retention Arf51F,I_chr2R_11210733_11210953 chr2R + chr2R_11210218_11210628 chr2R_11210217_11210218;chr2R_11210628_11210629 chr2R_11209979_11210217;chr2R_11210629_11210646 86.27 86.11 97.62 87.04 85.71 85.00 83.33 85.48 85.33 84.38 81.25 81.01 79.41 91.89 92.31 93.18 89.19 96.00 90.24 87.64 91.30 93.94 87.93 90.00 82.50 85.42 87.30 96.55 87.50 83.67 92.68 82.50 83.33 84.48 92.50 81.25 92.45 87.10 86.27 78.57 82.35 90.12 91.67 81.08 77.19 85.42 78.57 85.71 95.65 88.57 84.78 88.24 80.65 87.88 94.12 84.09 84.78 89.55 K cassette Fis1,I_chr2R_1491917_1491981,I_chr2R_1491917_1492087,I_chr2R_1492154_1492214 chr2R - chr2R_1491917_1492087 chr2R_1491917_1491972;chr2R_1492022_1492087 chr2R_1491973_1492021 chr2R_1491817_1491916;chr2R_1492088_1492153 98.41 98.04 98.36 97.80 100.00 100.00 96.95 99.25 99.35 95.45 100.00 100.00 100.00 100.00 98.18 97.26 98.39 96.36 98.88 99.32 97.78 96.55 98.41 98.41 97.14 97.83 98.28 94.74 94.74 94.44 98.99 97.44 96.30 99.28 97.83 100.00 100.00 97.87 100.00 98.46 96.43 99.22 98.46 98.04 100.00 98.55 100.00 100.00 98.44 98.33 100.00 97.62 100.00 98.21 98.82 100.00 98.90 98.00 K jcn_only_AA CG8786 chr3L - chr3L_19633419_19634164;chr3L_19633702_19634164 chr3L_19634085_19634164 chr3L_19634165_19634318;chr3L_19632984_19633418 16.52 NA NA NA NA NA 33.33 8.70 NA NA NA 34.48 NA NA NA NA NA NA NA 2.78 NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 13.04 NA 26.09 NA NA NA NA NA NA 3.70 NA NA NA NA NA NA NA NA NA K intron_retention ERR chr3L - chr3L_8177528_8177583 chr3L_8177527_8177528;chr3L_8177583_8177584 chr3L_8176583_8177527;chr3L_8177584_8178142 3.03 0.00 0.00 2.27 0.00 0.00 5.71 2.56 0.00 0.00 4.17 4.88 9.09 0.00 0.00 0.00 0.00 6.90 0.00 4.00 0.00 11.54 6.25 8.51 2.70 9.09 4.44 3.23 0.00 3.03 16.67 0.00 0.00 0.00 8.33 0.00 5.56 0.00 4.84 8.00 0.00 4.00 NA 3.03 12.00 10.53 5.77 0.00 5.88 3.70 3.57 0.00 0.00 0.00 7.89 5.56 0.00 12.50 K intron_retention BM-40-SPARC,I_chr3R_22696095_22697413 chr3R - chr3R_22695853_22695914 chr3R_22695852_22695853;chr3R_22695914_22695915 chr3R_22694664_22695852;chr3R_22695915_22696094 0.80 0.76 1.26 1.14 0.58 0.85 0.79 0.80 0.75 0.61 0.57 0.86 0.77 1.12 0.88 0.88 0.69 0.87 0.79 0.79 0.80 0.67 0.76 0.81 0.70 0.68 1.23 0.23 0.72 0.60 1.37 0.74 0.45 0.92 0.98 1.05 1.00 0.81 0.88 1.65 0.78 0.75 1.06 0.39 0.70 1.02 0.98 0.88 0.91 0.79 0.99 0.59 0.50 0.85 1.47 0.88 0.46 0.36 K intron_retention MRP,F_chr2L_12727117_12736035 chr2L + chr2L_12738177_12738240 chr2L_12738176_12738177;chr2L_12738240_12738241 chr2L_12737959_12738176;chr2L_12738241_12738747 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Tfb1 chr2R + chr2R_10251420_10251477 chr2R_10251419_10251420;chr2R_10251477_10251478 chr2R_10251081_10251419;chr2R_10251478_10252440 0.00 0.00 0.00 1.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24351030_24351592 chr3R_24351030_24351138;chr3R_24351310_24351592 chr3R_24351139_24351309 chr3R_24350630_24351029;chr3R_24351593_24351772 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 K jcn_only_AD CoRest,I_chrX_19416977_19417035 chrX + chrX_19416603_19417035;chrX_19416977_19417035;chrX_19416431_19417035;chrX_19416423_19417035 chrX_19416669_19417035 chrX_19417036_19417135;chrX_19416201_19416422 29.55 22.41 27.78 25.30 32.31 17.86 30.00 30.77 33.33 33.78 38.71 16.42 20.34 32.76 23.29 21.92 17.14 29.23 32.76 24.31 29.41 27.59 24.68 23.45 20.55 25.00 32.80 34.00 40.19 37.25 24.29 32.91 38.74 30.93 26.61 37.60 32.89 20.38 31.06 37.37 36.00 28.67 19.61 23.86 17.65 30.43 24.75 33.88 24.81 31.11 22.08 25.64 31.17 29.55 29.76 30.21 43.18 36.05 K intron_retention CG11695,RI_chrX_11473566_11473702,I_chrX_11475074_11475402 chrX + chrX_11471852_11471909 chrX_11471851_11471852;chrX_11471909_11471910 chrX_11471178_11471851;chrX_11471910_11472107 5.63 2.70 5.63 2.25 4.35 6.90 4.21 5.50 2.45 6.00 4.35 4.69 4.08 0.00 0.00 1.80 2.50 4.11 5.00 4.57 5.08 24.29 9.28 4.95 18.00 13.64 9.33 16.67 18.75 10.45 17.58 7.79 11.11 3.19 8.45 14.71 11.11 4.84 6.71 8.11 16.90 5.13 3.33 6.56 10.75 11.11 5.00 12.36 5.83 10.62 6.06 10.53 2.27 4.00 2.94 4.72 4.05 8.08 K intron_retention ImpL2 chr3L - chr3L_4224852_4224926 chr3L_4224851_4224852;chr3L_4224926_4224927 chr3L_4224068_4224851;chr3L_4224927_4225706 0.40 0.00 0.63 0.34 0.00 0.00 1.01 0.40 1.74 0.40 0.00 0.92 1.00 2.14 0.61 0.65 0.00 0.76 0.49 0.43 0.00 0.62 0.00 0.00 0.00 0.00 1.98 3.77 1.19 0.00 0.33 0.42 0.00 0.87 0.34 0.00 0.31 0.00 0.67 0.74 0.27 1.16 0.00 0.00 0.00 1.21 0.64 0.00 0.72 0.25 1.01 0.00 0.00 0.74 0.54 0.00 0.99 0.00 N alternative_donor CG17233,RI_chr3L_20232898_20232962 chr3L - chr3L_20233633_20234944;chr3L_20233633_20234218;chr3L_20233633_20234374 chr3L_20233633_20234418 chr3L_20232963_20233632;chr3L_20234945_20234989 83.33 81.82 80.00 81.25 88.89 87.50 85.71 73.68 89.29 100.00 87.50 80.95 83.33 88.89 84.62 76.47 77.78 90.00 81.82 69.23 77.78 64.29 83.33 91.67 81.82 88.89 84.62 75.00 88.89 86.67 85.71 88.89 81.25 72.22 80.00 90.91 86.67 83.33 84.62 86.96 90.91 82.61 77.78 85.71 81.82 85.71 88.89 80.00 79.17 75.00 85.71 80.00 90.91 100.00 80.00 81.82 80.00 90.48 K intron_retention CG5691,REI_chr3L_1962156_1962235 chr3L - chr3L_1962721_1962802 chr3L_1962720_1962721;chr3L_1962802_1962803 chr3L_1962644_1962720;chr3L_1962803_1962913 0.00 NA NA NA NA NA 7.69 NA 0.00 NA NA 14.29 NA NA NA NA NA NA NA NA NA 29.17 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor TMS1 chr3L + chr3L_16407594_16407920;chr3L_16407594_16407905;chr3L_16407594_16407914;chr3L_16407594_16407902 chr3L_16407594_16407893 chr3L_16407384_16407593;chr3L_16407921_16408056 46.95 46.75 51.97 34.47 46.53 48.65 29.90 47.13 49.55 38.18 52.83 43.08 53.47 54.22 52.07 52.43 60.23 45.92 48.45 46.18 51.96 49.57 44.94 46.01 47.66 65.98 46.30 67.92 46.79 47.95 40.68 42.95 50.21 47.40 49.52 40.87 40.34 46.10 44.39 46.39 48.17 49.58 51.16 40.83 50.21 46.95 46.05 46.09 47.78 41.77 45.71 52.44 37.11 44.23 50.00 46.88 47.74 36.29 K intron_retention CE_chrX_20766225_20927825,CG1518,snoRNA:MeU2-C28,snoRNA:Me28S-U3344a chrX - chrX_20922633_20922942 chrX_20922632_20922633;chrX_20922942_20922943 chrX_20922153_20922632;chrX_20922943_20923230 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.69 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 2.63 2.50 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.37 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.50 K cassette Gprk1,R_chr2R_238724_265876,RI_chr2R_357455_358274 chr2R - chr2R_295538_345527 chr2R_295538_315440;chr2R_315503_345527 chr2R_315441_315502 chr2R_295486_295537;chr2R_345528_345602 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention CG12162,I_chr3R_1293876_1293924,I_chr3R_1294319_1294410 chr3R + chr3R_1294753_1294807 chr3R_1294752_1294753;chr3R_1294807_1294808 chr3R_1294411_1294752;chr3R_1294808_1295342 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.71 2.86 1.61 2.38 2.56 0.00 0.00 2.41 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 1.03 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 K jcn_only_AD RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12914834_12916177;chr2R_12914845_12916177;chr2R_12914941_12916177 chr2R_12914849_12916177 chr2R_12916178_12916526;chr2R_12914830_12914833 4.65 NA NA 6.06 NA NA 2.78 12.82 2.33 NA NA 4.65 0.00 3.03 NA 4.76 NA NA 9.09 NA NA 0.00 4.00 NA NA NA NA NA 0.00 NA 6.45 NA NA 7.14 NA 8.70 NA NA NA 0.00 NA 10.34 0.00 9.52 NA 19.05 NA 2.17 2.38 NA 16.67 NA NA NA 4.76 NA NA 0.00 K intron_retention None chrU - chrU_1092161_1092213 chrU_1092160_1092161;chrU_1092213_1092214 0.00 0.00 0.00 4.71 NA 0.00 0.00 3.12 2.78 NA 0.00 7.02 3.85 5.00 0.00 4.88 2.94 NA 0.00 0.00 0.00 NA 8.33 4.76 NA NA NA NA NA NA 0.00 NA NA 3.03 NA NA NA NA NA 0.00 10.53 1.85 0.00 0.00 NA 7.41 NA NA 5.56 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention I_chr2R_17052549_17053657,LSm1 chr2R - chr2R_17057744_17057805 chr2R_17057743_17057744;chr2R_17057805_17057806 chr2R_17057390_17057743;chr2R_17057806_17057990 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 6.45 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5059,I_chr3L_20509233_20511440,I_chr3L_20509985_20510360 chr3L - chr3L_20509233_20509798 chr3L_20509232_20509233;chr3L_20509798_20509799 chr3L_20509133_20509232;chr3L_20509799_20509852 10.82 12.50 0.00 11.76 14.29 10.53 21.43 13.64 14.00 NA NA 8.16 23.08 9.09 17.39 7.41 10.53 5.56 8.33 11.11 7.69 NA NA 33.33 NA 7.14 NA NA NA NA 0.00 NA NA 17.39 NA NA NA NA NA NA NA 8.11 10.00 NA NA NA 35.71 NA 18.92 NA 35.71 NA NA NA 0.00 NA NA NA K intron_retention tlk chrX + chrX_3678062_3678076 chrX_3678061_3678062;chrX_3678076_3678077 chrX_3677710_3678061;chrX_3678077_3678169 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 99.07 100.00 100.00 99.43 100.00 99.15 100.00 100.00 100.00 99.42 99.28 100.00 100.00 99.60 100.00 100.00 100.00 100.00 100.00 100.00 99.61 100.00 99.52 100.00 100.00 100.00 98.88 100.00 99.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG5009 chr2R + chr2R_13651341_13651403 chr2R_13651340_13651341;chr2R_13651403_13651404 chr2R_13651235_13651340;chr2R_13651404_13651556 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 8.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL38 chr2R - chr2R_403825_403882 chr2R_403824_403825;chr2R_403882_403883 chr2R_402515_403824;chr2R_403883_404003 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 K intron_retention Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16112918_16113013 chr3L_16112917_16112918;chr3L_16113013_16113014 chr3L_16112792_16112917;chr3L_16113014_16114398 0.81 1.90 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 1.18 3.51 0.00 0.00 1.27 0.00 0.00 0.00 2.01 0.00 1.40 2.34 1.99 0.84 0.00 1.63 2.86 0.00 0.00 0.00 1.59 0.39 1.54 0.00 0.00 0.96 0.00 0.81 1.26 1.33 2.17 3.33 1.48 0.98 1.66 0.79 0.97 1.33 0.71 1.16 0.00 0.00 0.00 1.30 1.57 0.00 1.63 K alternative_acceptor Nrt chr3L + chr3L_16767467_16767532 chr3L_16767467_16767529 chr3L_16766814_16767466;chr3L_16767533_16770386 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA 96.67 NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 100.00 100.00 100.00 100.00 NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA 100.00 100.00 K intron_retention pst,I_chr3L_7352698_7352777 chr3L - chr3L_7352703_7352777 chr3L_7352702_7352703;chr3L_7352777_7352778 chr3L_7352634_7352702;chr3L_7352778_7352877 0.00 NA NA 4.35 NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 6.25 NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD n-syb,I_chr3L_1637270_1637558,metl chr3L - chr3L_1638855_1639041 chr3L_1638855_1638908 chr3L_1637903_1638854;chr3L_1639042_1639220 29.05 12.35 22.73 41.33 41.94 32.31 31.88 25.93 36.79 30.95 31.25 28.70 29.09 26.67 20.31 18.75 44.74 50.00 29.85 29.05 31.03 21.82 4.67 26.25 14.29 17.65 30.00 29.79 48.94 44.00 30.88 43.90 37.70 22.02 19.44 30.00 33.33 16.98 17.20 40.82 33.33 27.35 14.29 33.33 38.04 22.14 17.58 66.67 30.16 19.23 13.51 24.00 18.42 14.88 26.03 16.67 12.38 40.54 K jcn_only_AD Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_137257_137445 chr4_137257_137311 chr4_137167_137256;chr4_137446_139127 100.00 100.00 100.00 99.23 NA 100.00 99.26 99.26 100.00 NA 100.00 100.00 100.00 100.00 100.00 99.36 100.00 NA 100.00 100.00 NA NA 100.00 98.08 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 99.14 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 99.29 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8107426_8107747 chr2L + chr2L_8083522_8089393 chr2L_8083522_8083901;chr2L_8084391_8089393 chr2L_8083902_8084390 chr2L_8083444_8083521;chr2L_8089394_8089493 10.00 12.50 5.88 6.98 NA 10.00 8.89 6.67 5.97 NA 14.29 7.14 5.00 4.76 12.50 6.98 10.00 28.57 5.26 4.44 18.18 80.00 50.00 60.00 NA NA NA NA 27.27 42.86 9.09 NA 23.08 6.45 NA NA 20.00 NA NA 15.38 8.33 9.09 12.50 NA NA 10.00 NA 20.00 6.06 NA NA NA NA NA 7.69 NA NA 11.11 K intron_retention wgn chrX - chrX_18523285_18528441 chrX_18523284_18523285;chrX_18528441_18528442 chrX_18522808_18523284;chrX_18528442_18528954 0.00 0.00 0.00 2.00 0.00 0.00 6.82 4.17 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 2.56 0.00 2.15 0.00 9.09 1.32 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 4.76 0.00 0.00 0.00 1.47 0.00 1.37 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 1.75 K jcn_only_AA brat,I_chr2L_19134277_19143634,EI_chr2L_19145845_19145958,RI_chr2L_19145845_19146761 chr2L + chr2L_19145845_19166084 chr2L_19145845_19145958 chr2L_19145819_19145844;chr2L_19166085_19166125 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA 4.17 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention pes chr2L - chr2L_7988328_7988392 chr2L_7988327_7988328;chr2L_7988392_7988393 chr2L_7987113_7988327;chr2L_7988393_7989177 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Dab chr3L + chr3L_16715102_16715163 chr3L_16715101_16715102;chr3L_16715163_16715164 chr3L_16714358_16715101;chr3L_16715164_16715293 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 1.25 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG6876,CG6878 chr3L + chr3L_15152877_15152938 chr3L_15152876_15152877;chr3L_15152938_15152939 chr3L_15152425_15152876;chr3L_15152939_15153557 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 1.37 0.00 0.00 0.00 3.03 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG40439,I_chr2L_22690863_22690905 chr2L - chr2L_22690836_22690905 chr2L_22690835_22690836;chr2L_22690905_22690906 chr2L_22690763_22690835;chr2L_22690906_22691005 2.51 5.13 4.17 2.52 0.00 0.00 1.16 1.72 2.72 NA 0.00 4.21 3.70 1.37 0.00 2.35 0.00 3.12 5.56 3.80 0.00 10.53 0.00 0.00 10.71 0.00 8.70 10.00 12.50 0.00 0.00 0.00 NA 0.00 7.14 15.79 0.00 NA NA 6.06 0.00 2.50 0.00 0.00 7.14 4.76 0.00 0.00 5.21 11.63 9.09 7.32 6.67 NA 4.55 0.00 3.17 0.00 K intron_retention dia chr2L + chr2L_20758386_20760524 chr2L_20758385_20758386;chr2L_20760524_20760525 chr2L_20758126_20758385;chr2L_20760525_20760841 64.97 62.50 80.00 84.00 46.67 81.82 75.00 64.52 72.09 29.41 64.29 68.42 68.75 70.00 65.38 66.67 77.78 56.25 76.47 64.71 58.82 81.25 44.83 69.23 63.64 85.71 73.08 70.59 35.29 66.67 81.82 60.00 57.14 81.25 75.00 80.00 60.00 50.00 63.64 61.29 NA 68.75 62.50 60.00 NA NA NA 73.68 58.82 52.94 56.25 60.00 60.00 NA 65.22 81.82 53.85 60.00 K intron_retention ORMDL chr3L + chr3L_21628662_21628717 chr3L_21628661_21628662;chr3L_21628717_21628718 chr3L_21628596_21628661;chr3L_21628718_21628785 9.76 9.76 10.00 26.53 8.22 11.54 18.29 8.24 12.77 19.35 19.67 10.08 10.87 5.88 8.86 8.62 7.94 11.48 3.17 10.47 13.58 21.82 10.42 7.37 26.83 24.14 10.42 8.99 41.43 10.84 12.50 8.43 11.63 7.48 5.56 26.92 8.85 9.09 8.57 7.92 24.56 8.66 8.70 7.14 6.98 6.67 7.37 4.92 4.00 9.01 10.00 14.00 6.38 10.42 14.10 9.80 7.86 1.16 K jcn_only_AD CG31716,I_chr2L_10397648_10398034 chr2L + chr2L_10398741_10399316 chr2L_10398750_10399316 chr2L_10399317_10399535;chr2L_10398654_10398740 28.76 33.33 39.06 37.23 30.00 26.23 25.26 24.24 27.70 8.00 24.14 23.26 44.44 26.92 26.87 25.00 32.88 27.12 28.57 36.80 36.54 35.00 33.33 36.84 NA 20.00 31.58 NA 36.67 37.84 32.50 21.62 NA 25.42 24.39 25.00 39.39 19.23 40.62 8.00 40.00 29.55 31.03 31.03 NA 38.89 NA 27.50 22.68 18.52 34.43 15.00 12.00 31.82 36.84 28.95 13.33 28.57 K jcn_only_AA CG3419 chr2R + chr2R_20301935_20302017;chr2R_20301935_20301994 chr2R_20301935_20301990 chr2R_20299701_20301934;chr2R_20302018_20302306 13.04 NA NA NA NA NA NA 12.50 20.00 NA NA 13.04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention chic,RI_chr2L_5976783_5980950,I_chr2L_5979705_5979818,I_chr2L_5979705_5979941,RI_chr2L_5979705_5979951,I_chr2L_5979705_5979953,I_chr2L_5979705_5980025,I_chr2L_5979705_5980213,I_chr2L_5979705_5980370,I_chr2L_5979705_5980558,I_chr2L_5979705_5980632,I_chr2L_5979705_5980639,RI_chr2L_5979705_5980734 chr2L - chr2L_5979705_5980950 chr2L_5979704_5979705;chr2L_5980950_5980951 chr2L_5979605_5979704;chr2L_5980951_5981025 0.93 0.00 0.00 2.21 1.63 0.00 0.00 0.60 1.73 2.27 0.93 1.35 1.56 1.57 1.16 1.08 0.00 4.58 1.01 0.91 0.00 0.70 1.16 0.00 0.00 2.05 4.62 5.41 4.76 0.00 1.20 0.00 0.42 0.64 1.27 0.00 5.26 1.59 0.00 1.74 0.37 1.57 0.00 1.49 0.95 0.59 0.00 0.26 1.51 0.00 2.67 0.00 0.66 0.00 0.43 2.86 2.61 0.67 N intron_retention RpS27A chr2L + chr2L_10410157_10410240 chr2L_10410156_10410157;chr2L_10410240_10410241 chr2L_10408388_10410156;chr2L_10410241_10410467 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 67.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 86.59 100.00 K jcn_only_AA Spn5,CG6687 chr3R - chr3R_11030270_11032070 chr3R_11030273_11032070 chr3R_11032071_11032377;chr3R_11029272_11030269 86.64 87.85 85.99 85.39 85.03 88.39 86.18 87.45 87.09 86.86 86.64 88.82 85.93 86.85 89.15 85.71 87.37 87.56 89.34 85.47 87.04 85.33 86.30 87.03 86.05 87.45 86.12 77.93 84.82 87.04 85.07 79.70 84.96 87.28 87.89 88.82 86.36 87.50 89.94 85.00 86.74 86.20 85.34 85.48 85.88 87.22 86.33 81.43 87.42 86.49 86.67 88.18 86.21 86.13 88.27 88.71 88.55 79.48 K intron_retention Eph,I_chr4_639690_640473,I_chr4_640410_640485,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_640410_640473 chr4_640409_640410;chr4_640473_640474 chr4_640310_640409;chr4_640474_640573 0.00 0.00 0.00 1.41 0.00 0.00 0.00 2.50 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA faf,RI_chr3R_27603474_27603893,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27604481_27605081 chr3R_27604481_27604751 chr3R_27603894_27604480;chr3R_27605082_27605230 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.20 0.00 0.00 0.00 0.00 0.00 21.43 15.15 0.00 0.00 0.00 7.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K alternative_acceptor mRpL39 chr3L - chr3L_14991714_14991895 chr3L_14991723_14991895 chr3L_14991896_14991996;chr3L_14991280_14991713 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 97.14 96.43 100.00 100.00 100.00 100.00 96.97 100.00 98.25 95.65 97.30 97.87 100.00 96.00 97.44 100.00 100.00 100.00 100.00 95.65 100.00 98.36 100.00 98.25 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention yata chr3R + chr3R_25577792_25577860 chr3R_25577791_25577792;chr3R_25577860_25577861 chr3R_25577646_25577791;chr3R_25577861_25577989 0.00 0.00 0.00 0.57 0.00 0.00 1.31 0.56 0.34 0.00 0.77 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 2.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.72 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Rbp2,I_chrX_16343528_16343906 chrX + chrX_16344535_16345307 chrX_16344634_16345307 chrX_16345308_16345592;chrX_16344347_16344534 5.32 5.39 14.29 4.64 5.56 7.69 6.25 4.65 3.41 7.07 12.77 2.23 0.00 0.00 7.41 5.88 7.89 10.87 5.56 2.86 15.91 2.78 5.60 5.26 3.21 7.89 5.32 1.49 11.07 5.29 13.04 6.88 4.89 4.02 4.04 3.53 4.88 4.74 5.77 1.77 2.72 4.36 9.09 10.65 4.61 5.65 5.02 7.47 4.52 1.23 4.19 5.47 9.15 4.79 6.25 5.24 6.16 9.54 K multi_cassette cora,I_chr2R_15125277_15130573,I_chr2R_15125940_15130208,I_chr2R_15129291_15129988 chr2R + chr2R_15125940_15130208 chr2R_15125940_15126293;chr2R_15128442_15128462;chr2R_15129291_15129678;chr2R_15129901_15129988;chr2R_15130091_15130208 chr2R_15126294_15128441;chr2R_15128463_15129290;chr2R_15129679_15129900;chr2R_15129989_15130090 chr2R_15125887_15125939;chr2R_15130209_15130308 100.00 100.00 100.00 99.82 100.00 100.00 100.00 100.00 100.00 99.49 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG13900,I_chr3L_830745_830907 chr3L - chr3L_830729_830907 chr3L_830728_830729;chr3L_830907_830908 chr3L_830717_830728;chr3L_830908_831007 3.02 5.26 1.03 7.20 1.56 5.00 8.11 2.52 2.16 5.26 0.00 2.01 1.41 3.90 3.81 2.34 1.32 0.00 0.00 3.72 2.60 8.64 4.21 9.30 6.45 0.00 5.31 9.76 0.00 3.57 0.56 4.92 5.49 3.12 7.32 6.90 3.05 2.47 2.34 5.83 0.00 4.07 1.39 3.57 0.00 0.00 0.00 3.12 3.02 0.00 5.45 2.15 0.00 3.70 0.93 0.00 0.00 8.57 K intron_retention Galpha49B,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8504447_8504576 chr2R_8504446_8504447;chr2R_8504576_8504577 chr2R_8504292_8504446;chr2R_8504577_8504634 0.00 0.00 1.30 6.25 0.00 0.00 2.17 5.04 2.50 0.00 0.00 0.00 1.52 0.00 2.78 1.77 0.00 0.00 0.00 3.10 0.00 0.00 0.00 0.00 1.69 1.79 0.00 0.00 0.00 0.00 0.00 0.00 5.15 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 3.82 0.00 0.00 0.00 0.00 0.00 0.00 1.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG10089,I_chr3L_13460276_13460443 chr3L - chr3L_13460240_13460443 chr3L_13460276_13460443 chr3L_13460444_13460543;chr3L_13460176_13460239 0.00 NA NA 5.56 NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 5.00 0.00 NA 0.00 0.00 NA 9.09 NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 K intron_retention RpS3A chr4 - chr4_86148_86625 chr4_86147_86148;chr4_86625_86626 chr4_85683_86147;chr4_86626_86675 0.00 0.00 0.00 0.34 NA 0.00 0.00 0.00 2.27 NA NA 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 NA 4.65 NA NA NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 6.06 K intron_retention qtc chr2L + chr2L_5068395_5070096 chr2L_5068394_5068395;chr2L_5070096_5070097 chr2L_5068296_5068394;chr2L_5070097_5070299 30.60 NA 23.53 38.46 NA 36.36 46.15 35.29 18.18 NA NA 30.43 60.00 NA 33.33 30.00 NA NA NA 26.67 NA NA NA NA NA NA NA NA NA NA NA 14.29 17.65 35.29 NA NA NA NA NA 33.33 NA 36.84 NA NA NA 41.67 0.00 16.67 30.77 NA 22.22 NA 14.29 36.36 30.77 NA 11.11 21.43 K intron_retention cul-2,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21661637_21662083 chr2L_21661636_21661637;chr2L_21662083_21662084 chr2L_21661537_21661636;chr2L_21662084_21662183 0.00 0.00 0.00 3.49 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 4.35 0.00 2.04 0.00 0.00 5.49 2.67 6.45 0.00 3.57 0.00 0.00 0.00 2.94 1.69 0.00 0.00 0.00 0.00 1.54 2.47 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 N jcn_only_AD I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545799_17545850;chr2R_17545767_17545850;chr2R_17545781_17545850;chr2R_17545686_17545850;chr2R_17545690_17545850 chr2R_17545615_17545850 chr2R_17545851_17545985;chr2R_17545613_17545614 46.25 47.95 75.71 71.91 78.82 74.16 53.68 73.39 71.26 11.11 67.19 67.83 72.88 70.69 76.79 42.53 78.26 70.59 82.19 70.78 62.50 46.67 0.00 2.56 17.39 64.86 10.53 NA 16.22 11.43 66.67 44.23 45.83 75.70 30.43 12.50 19.40 16.98 16.67 16.13 31.43 78.49 72.46 20.00 63.16 22.95 23.21 21.95 71.55 12.20 8.93 12.90 60.00 4.88 70.27 14.29 24.69 36.84 K alternative_donor Gga chrX + chrX_9495403_9496113 chrX_9495445_9496113 chrX_9496114_9496708;chrX_9495287_9495402 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 98.04 100.00 98.21 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 K jcn_only_AA eIF2B-delta chr2R + chr2R_19274146_19274312;chr2R_19274146_19274464 chr2R_19274146_19274529 chr2R_19274016_19274145 85.56 97.14 86.49 75.71 NA 83.87 87.78 87.14 89.62 NA 67.65 91.49 44.12 81.82 89.19 86.89 85.29 93.94 78.43 94.37 79.31 86.89 87.04 86.36 71.43 83.33 82.22 82.98 85.71 92.00 86.36 NA NA 80.28 73.08 93.33 87.50 96.88 95.65 82.50 65.00 93.94 71.79 88.24 NA 84.78 90.62 88.00 78.72 82.35 83.33 85.42 85.71 84.00 76.60 75.86 85.00 95.00 K intron_retention BHD chr3L + chr3L_7232894_7232982 chr3L_7232893_7232894;chr3L_7232982_7232983 chr3L_7231645_7232893;chr3L_7232983_7233085 1.47 5.88 NA 22.22 NA NA 0.00 0.00 2.94 NA NA 5.56 NA NA NA NA NA NA NA 11.11 NA 59.09 0.00 NA NA NA NA NA 15.38 NA NA NA 6.25 0.00 NA NA NA NA NA 21.43 NA 7.14 NA 0.00 NA 0.00 5.56 0.00 NA 0.00 NA NA NA NA NA 0.00 0.00 0.00 K intron_retention CG10417,E_chr2R_1248333_1249215,RI_chr2R_1248452_1248523 chr2R - chr2R_1249055_1249103 chr2R_1249054_1249055;chr2R_1249103_1249104 chr2R_1248524_1249054;chr2R_1249104_1250072 0.00 1.19 0.00 0.00 0.00 0.00 0.83 1.14 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 7.14 3.12 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1812,noncoding_24986 chrX + chrX_20384779_20384857 chrX_20384778_20384779;chrX_20384857_20384858 chrX_20383929_20384778;chrX_20384858_20385217 7.55 NA NA 0.00 NA NA 17.65 0.00 11.76 NA NA 10.53 NA NA NA NA NA NA NA 12.50 NA 27.27 0.00 NA NA NA 11.11 NA 0.00 NA NA NA NA 6.25 NA 41.67 0.00 NA 6.25 7.41 NA 7.69 NA NA NA NA NA NA 9.09 NA 7.14 NA NA NA NA NA NA NA K intron_retention CG10209,SMC2,I_chr2R_10737857_10737917 chr2R - chr2R_10735477_10735704 chr2R_10735476_10735477;chr2R_10735704_10735705 chr2R_10735321_10735476;chr2R_10735705_10735869 0.00 NA NA NA NA NA 4.35 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 6.12 NA NA 0.00 0.00 NA NA NA NA 6.25 NA NA 0.00 7.41 0.00 NA NA NA NA NA 9.09 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 6.67 0.00 5.00 NA 0.00 NA 11.76 NA NA 0.00 K alternative_acceptor CG34413,I_chr2R_20770543_20770586,I_chr2R_20771136_20772048,I_chr2R_20773500_20774745 chr2R + chr2R_20770543_20770599 chr2R_20770543_20770586 chr2R_20770443_20770542;chr2R_20770600_20770686 0.00 1.12 0.74 0.00 0.00 0.00 0.58 0.45 0.48 0.00 0.00 0.00 0.00 0.00 0.70 0.00 1.06 0.00 0.00 0.00 1.94 0.00 1.37 0.00 0.00 0.00 2.46 0.00 0.59 0.00 0.56 0.00 0.00 0.52 1.00 1.82 0.00 1.39 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 K intron_retention Arf51F,I_chr2R_11210733_11210953 chr2R + chr2R_11210536_11210628 chr2R_11210535_11210536;chr2R_11210628_11210629 chr2R_11210467_11210535;chr2R_11210629_11210646 90.00 66.67 88.89 88.89 NA NA 90.91 87.50 93.33 NA NA 75.00 NA 100.00 92.31 91.67 NA 84.62 90.00 83.33 NA 100.00 63.64 81.82 63.64 NA 93.33 NA 90.00 87.50 83.33 NA 100.00 92.31 NA NA 92.31 NA 94.12 100.00 88.89 94.12 NA NA NA 84.62 90.00 90.91 87.50 NA NA NA NA NA 92.31 88.89 90.00 90.91 K intron_retention Syb chr2R - chr2R_6138092_6138383 chr2R_6138091_6138092;chr2R_6138383_6138384 chr2R_6138070_6138091;chr2R_6138384_6138649 5.26 12.50 5.26 4.33 0.00 5.71 11.76 4.58 10.31 2.33 6.19 8.05 5.26 7.50 5.26 5.10 0.00 1.82 8.33 5.03 5.71 15.56 11.54 4.48 0.00 6.67 6.56 9.09 4.26 1.82 3.49 1.15 1.35 7.41 2.13 0.00 5.41 13.04 5.41 0.85 0.00 4.08 0.00 2.38 0.72 1.20 8.00 2.22 10.26 4.55 9.26 11.54 8.33 6.12 7.69 3.77 8.00 2.07 K alternative_acceptor CG13384 chr2L + chr2L_8386386_8386483;chr2L_8386386_8386486 chr2L_8386386_8386474 chr2L_8386217_8386385;chr2L_8386487_8387378 23.31 24.15 22.94 23.58 24.75 24.19 23.08 23.34 27.41 26.30 23.38 24.52 23.99 23.15 21.78 26.58 20.86 22.58 23.12 25.97 23.82 22.49 24.57 23.31 23.79 24.28 21.62 20.25 22.22 20.40 24.80 23.02 21.81 25.15 22.67 21.81 25.55 25.68 27.02 19.84 23.05 24.15 26.39 22.81 22.95 22.46 21.25 23.97 23.12 24.76 26.68 23.62 20.00 22.10 24.10 23.17 21.43 21.68 K intron_retention obst-A chrX + chrX_20112889_20112958 chrX_20112888_20112889;chrX_20112958_20112959 chrX_20112685_20112888;chrX_20112959_20114165 5.56 5.56 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 17.65 5.56 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA 10.53 NA 0.00 NA NA 11.11 13.33 NA NA 0.00 9.09 NA NA NA NA NA NA 30.77 NA K alternative_acceptor cic,RI_chr3R_16122222_16123529 chr3R + chr3R_16122222_16122818;chr3R_16122222_16124105 chr3R_16122222_16123529 chr3R_16122122_16122221;chr3R_16124106_16124254 2.35 1.77 2.06 2.70 1.20 1.20 5.08 1.86 1.79 4.76 1.37 2.29 2.60 2.56 0.75 5.06 1.11 1.59 2.35 1.33 1.01 23.57 1.05 2.34 2.59 7.37 3.88 10.28 8.45 5.00 1.04 4.17 5.69 0.72 2.50 11.72 3.92 1.67 2.66 2.53 3.92 0.91 1.32 4.46 12.20 2.22 1.69 6.33 1.61 3.33 2.27 4.17 2.44 1.45 0.81 1.64 0.00 2.67 K jcn_only_AA CG2316,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_210055,I_chr4_209875_210628,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_211303,RI_chr4_210688_211927,I_chr4_210688_213991,I_chr4_210688_214019,I_chr4_210688_214049,RI_chr4_210688_214450 chr4 - chr4_209369_210623 chr4_209875_210623 chr4_210624_210636;chr4_209269_209368 100.00 NA 100.00 96.30 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 95.65 NA 100.00 100.00 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA 98.51 NA NA NA NA NA 100.00 NA NA NA K jcn_only_AA Gpo-1,I_chr2R_11747621_11747699,EI_chr2R_11747445_11747699,I_chr2R_11749758_11750187,I_chr2R_11756325_11756380 chr2R - chr2R_11748228_11750187;chr2R_11749758_11750187 chr2R_11748259_11750187 chr2R_11750188_11750219;chr2R_11748106_11748227 96.30 100.00 94.44 100.00 NA 92.31 90.79 100.00 92.73 94.59 90.91 97.37 92.86 88.46 100.00 100.00 100.00 NA 100.00 94.74 100.00 95.16 97.47 94.44 96.88 96.43 98.53 95.74 93.62 92.59 97.56 92.45 90.57 97.67 97.83 92.86 95.77 95.24 96.30 97.39 96.23 95.92 NA 93.55 97.37 96.92 98.72 100.00 97.01 89.29 96.97 96.61 85.19 97.73 93.55 97.62 NA 92.59 K jcn_only_AD CSN8,I_chr2L_8365282_8365388,I_chr2L_8367210_8367311 chr2L + chr2L_8365282_8365388 chr2L_8365329_8365388 chr2L_8365389_8365488;chr2L_8365182_8365281 100.00 100.00 97.30 98.80 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.15 100.00 100.00 100.00 99.16 100.00 100.00 98.78 98.18 100.00 100.00 98.81 98.82 100.00 85.71 100.00 100.00 98.21 100.00 98.67 100.00 98.63 100.00 100.00 97.73 98.39 100.00 100.00 100.00 97.83 100.00 100.00 97.37 100.00 100.00 100.00 98.81 98.46 100.00 100.00 97.87 98.41 100.00 100.00 99.07 99.22 98.95 K alternative_donor bnl,I_chr3R_15621238_15621299 chr3R - chr3R_15621238_15621935 chr3R_15621238_15621299 chr3R_15621138_15621237;chr3R_15621936_15622463 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA K jcn_only_AA tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563485_567573;chr3R_563461_567573 chr3R_563503_567573 chr3R_567574_568885;chr3R_563195_563460 62.77 69.05 59.52 82.46 56.41 43.48 32.86 55.36 66.33 NA 37.50 56.00 79.55 65.22 70.21 75.38 62.50 62.86 62.86 59.04 60.00 64.00 60.00 74.36 NA 76.09 72.09 70.83 54.55 62.86 80.00 NA 58.49 62.86 52.17 69.57 58.14 77.78 45.95 62.69 51.28 67.53 57.58 59.38 58.06 82.22 34.38 77.42 60.00 70.97 44.44 77.78 NA NA 75.00 72.09 51.85 60.00 K intron_retention I_chr2L_6323791_6325172,Gef26,I_chr2L_6330719_6330770 chr2L + chr2L_6329698_6330770 chr2L_6329697_6329698;chr2L_6330770_6330771 chr2L_6329548_6329697;chr2L_6330771_6330832 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 17.65 NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA 0.00 9.52 0.00 10.53 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA 13.33 NA K jcn_only_AD eIF-2beta,RI_chr3L_12519486_12519541 chr3L - chr3L_12519486_12519688;chr3L_12519486_12519596;chr3L_12519486_12519590 chr3L_12519486_12519541 chr3L_12519386_12519485;chr3L_12519689_12519829 0.46 0.65 0.32 0.00 0.00 2.23 0.81 0.00 0.41 0.97 0.52 0.84 1.08 0.00 0.00 0.69 0.56 0.37 0.37 0.18 0.38 0.34 0.45 0.53 2.90 0.74 0.62 0.46 0.00 0.35 3.53 0.47 0.54 0.28 0.82 0.00 1.52 0.00 2.25 0.00 0.00 0.00 0.48 0.46 1.18 1.32 0.57 0.47 0.95 0.34 0.00 0.00 0.00 0.86 0.00 0.55 0.00 0.69 K jcn_only_AA Keap1 chr3R - chr3R_12902225_12902298 chr3R_12902247_12902298 chr3R_12902299_12902615;chr3R_12901967_12902224 34.79 36.36 33.33 25.00 NA 23.08 37.93 25.93 35.00 27.14 NA 30.43 NA 33.33 22.22 33.33 33.33 36.00 NA 26.79 45.00 27.10 41.18 38.00 43.90 28.00 29.23 26.32 41.46 40.00 50.00 42.11 45.83 27.78 39.53 44.68 42.65 43.24 40.91 32.97 39.22 26.19 20.00 40.91 29.03 34.00 30.00 34.58 25.81 36.11 42.11 40.00 38.10 NA 28.95 38.10 30.43 35.59 K alternative_acceptor CG11006,F_chr3L_12799159_12799339 chr3L + chr3L_12799438_12799952;chr3L_12799438_12799955;chr3L_12799438_12800078;chr3L_12799438_12799967 chr3L_12799438_12800192 chr3L_12799340_12799437;chr3L_12800193_12800930 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA 100.00 NA 68.75 93.33 100.00 100.00 NA NA 92.86 100.00 100.00 NA NA 98.28 NA 100.00 100.00 91.67 100.00 96.15 95.92 100.00 100.00 NA 100.00 96.77 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 NA 100.00 K jcn_only_AA CG14225,I_chrX_19569702_19569879,I_chrX_19573364_19573474 chrX - chrX_19569689_19569836 chrX_19569702_19569836 chrX_19569837_19569924;chrX_19569602_19569688 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG5292 chr3R + chr3R_12978217_12978272 chr3R_12978216_12978217;chr3R_12978272_12978273 chr3R_12977451_12978216;chr3R_12978273_12978282 45.80 NA NA 46.15 NA NA 41.67 NA 30.00 NA NA 35.71 NA NA NA NA NA NA NA 22.73 NA NA 45.45 NA NA 77.78 NA NA 77.78 NA NA NA NA NA NA 88.24 NA NA NA NA 71.43 41.67 NA NA 55.56 40.00 NA 70.00 41.67 NA NA NA NA NA NA NA NA 70.00 K jcn_only_AD CG40191,I_chr2RHet_392279_392824 chr2RHet + chr2RHet_391927_392824;chr2RHet_392686_392824 chr2RHet_392279_392824 chr2RHet_392825_392923 2.38 NA NA NA NA 0.00 NA 0.00 0.00 NA NA 2.86 NA 7.69 5.00 0.00 NA 10.00 0.00 0.00 NA NA 0.00 8.70 NA NA 3.33 NA NA NA 12.50 NA NA 3.33 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA 7.41 2.94 NA 2.38 NA 0.00 NA NA 7.41 NA 0.00 8.00 NA K intron_retention Dap160,I_chr2L_21139943_21140007 chr2L - chr2L_21138031_21138711 chr2L_21138030_21138031;chr2L_21138711_21138712 chr2L_21137757_21138030;chr2L_21138712_21139602 14.29 NA NA 7.41 NA NA NA 33.33 14.29 NA NA NA NA NA NA NA NA NA NA 11.11 NA 14.29 6.67 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 14.29 NA NA NA NA 30.77 NA NA NA NA NA 35.71 14.29 NA 6.25 NA NA NA NA 14.29 NA 15.38 K alternative_acceptor Upf2,I_chrX_7969268_7969358,I_chrX_7969312_7969358 chrX - chrX_7969312_7969358;chrX_7969293_7969358;chrX_7969303_7969358 chrX_7969268_7969358 chrX_7969359_7969458;chrX_7969212_7969267 8.33 12.50 0.00 21.43 10.00 0.00 6.67 11.11 0.00 16.67 NA 8.33 8.33 0.00 9.09 23.08 25.00 0.00 0.00 8.33 16.67 7.69 7.69 16.67 0.00 0.00 NA 8.33 0.00 33.33 18.18 NA 14.29 4.76 0.00 0.00 18.75 0.00 0.00 15.38 NA 5.00 20.00 11.11 16.67 NA NA 0.00 25.00 25.00 33.33 NA 0.00 NA 7.69 NA 20.00 25.00 K intron_retention alpha-Cat,I_chr3L_23319861_23321813,I_chr3L_23322620_23322985,I_chr3L_23327841_23328002 chr3L - chr3L_23322499_23322985 chr3L_23322498_23322499;chr3L_23322985_23322986 chr3L_23322330_23322498;chr3L_23322986_23323085 0.00 0.00 0.00 0.79 2.17 0.00 0.88 2.26 1.41 0.00 0.00 0.00 4.00 3.90 0.00 3.12 0.00 0.00 1.45 2.48 0.00 0.00 1.49 1.96 0.00 0.00 3.28 3.03 0.00 0.00 3.49 0.00 1.54 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.00 2.78 2.08 3.12 0.00 2.15 0.00 6.45 0.00 K jcn_only_AD CG7530,I_chr3R_10553050_10555615,eff chr3R - chr3R_10553050_10556232 chr3R_10553050_10554503 chr3R_10552950_10553049;chr3R_10556233_10556351 19.18 18.30 17.20 20.38 18.24 17.24 26.83 25.97 19.84 22.73 18.58 22.87 20.00 21.99 24.56 27.78 18.00 24.32 21.88 19.86 19.18 40.62 17.93 14.14 23.60 22.50 14.71 11.11 11.76 14.89 24.14 20.83 14.81 20.09 24.14 16.39 9.66 15.38 15.05 12.99 24.07 20.00 19.38 17.72 11.54 22.30 11.02 27.78 18.28 12.30 23.33 21.95 4.84 12.77 22.87 18.13 13.88 12.31 K alternative_donor CG17082,I_chr2R_632143_635290,R_chr2R_642176_644740,I_chr2R_644094_644145,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_632192_632274;chr2R_631984_632274;chr2R_632196_632274;chr2R_632143_632274 chr2R_632085_632274 chr2R_632275_632399;chr2R_631970_631983 0.00 NA NA 16.67 NA NA 12.50 0.00 0.00 NA NA 25.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA N alternative_donor R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083458_8089356 chr2L_8083522_8089356 chr2L_8089357_8089736;chr2L_8083444_8083457 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA NA 90.00 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 K alternative_acceptor Nak chr2L - chr2L_18962792_18962884 chr2L_18962834_18962884 chr2L_18962885_18963115;chr2L_18962646_18962791 85.71 NA NA 87.50 NA NA NA 85.71 85.71 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 71.43 NA NA NA NA NA 62.50 NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor I_chr3R_261173_261244,CG14650,RI_chr3R_265878_265942 chr3R + chr3R_265874_265942 chr3R_265878_265942 chr3R_265943_266042;chr3R_265778_265873 1.19 1.15 0.00 0.00 1.67 0.00 2.60 1.23 3.25 0.00 0.00 1.68 0.00 0.00 1.52 0.00 0.00 0.00 1.61 0.00 0.00 1.49 1.83 0.00 0.00 0.00 0.00 1.82 2.82 1.59 4.69 1.92 0.00 1.25 0.00 2.08 2.59 0.00 0.85 1.06 0.00 0.00 1.92 2.44 1.05 1.32 1.19 2.13 2.30 2.13 1.19 1.75 1.32 4.23 2.70 1.14 0.00 0.00 K alternative_donor Nhe1,I_chr2L_105456_106437,I_chr2L_105916_106437 chr2L - chr2L_105456_106437 chr2L_105456_105511 chr2L_105391_105455;chr2L_106438_106537 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 93.33 95.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 96.15 100.00 92.31 91.67 94.74 100.00 94.74 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 92.86 93.33 96.43 K intron_retention CG10737 chr2R + chr2R_15062754_15063752 chr2R_15062753_15062754;chr2R_15063752_15063753 chr2R_15062592_15062753;chr2R_15063753_15063852 97.87 96.97 97.24 96.09 98.15 100.00 94.89 98.65 97.57 97.87 98.97 98.20 99.23 99.17 99.23 96.30 99.17 98.59 99.23 97.49 96.92 92.48 97.47 99.31 98.98 99.31 98.43 94.29 98.81 97.41 99.41 98.90 83.75 96.46 97.22 99.03 97.18 95.90 97.98 98.48 100.00 97.86 97.30 99.34 94.57 99.49 99.32 95.24 97.14 98.29 97.59 96.77 96.55 97.56 99.37 95.92 98.28 96.24 K intron_retention ena chr2R + chr2R_15047541_15047753 chr2R_15047540_15047541;chr2R_15047753_15047754 chr2R_15047496_15047540;chr2R_15047754_15048407 90.70 89.86 83.33 91.67 89.71 88.14 93.10 87.50 88.96 89.74 90.54 96.06 82.35 93.88 91.36 92.31 87.72 84.62 98.28 91.00 85.33 96.34 88.31 89.83 91.30 93.62 93.10 88.46 84.21 86.75 91.80 91.67 91.25 91.45 91.49 90.70 89.31 94.44 87.10 93.79 96.15 91.19 91.11 92.96 94.12 97.50 88.10 84.62 87.50 91.30 84.21 84.38 85.00 87.50 92.68 90.70 88.57 86.67 K intron_retention capt,I_chr2L_1156009_1158078,I_chr2L_1153732_1157370,I_chr2L_1163632_1163759 chr2L - chr2L_1153319_1153385 chr2L_1153318_1153319;chr2L_1153385_1153386 chr2L_1152771_1153318;chr2L_1153386_1153731 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor oho23B,I_chr2L_2856176_2856244,I_chr2L_2856573_2856630,RI_chr2L_2856673_2856772 chr2L + chr2L_2856176_2856218;chr2L_2856176_2856246 chr2L_2856176_2856222 chr2L_2856076_2856175;chr2L_2856247_2856287 0.04 0.05 0.06 0.07 0.00 0.00 0.04 0.06 0.03 0.00 0.03 0.03 0.09 0.03 0.07 0.04 0.04 0.03 0.03 0.02 0.06 0.08 0.04 0.00 0.06 0.03 0.08 0.61 0.00 0.00 0.05 0.00 0.00 0.08 0.11 0.11 0.09 0.04 0.04 0.00 0.00 0.03 0.07 0.07 0.02 0.11 0.12 0.04 0.05 0.09 0.11 0.04 0.06 0.10 0.05 0.10 0.09 0.03 K intron_retention drpr,I_chr3L_1720385_1723579 chr3L - chr3L_1716944_1717002 chr3L_1716943_1716944;chr3L_1717002_1717003 chr3L_1716797_1716943;chr3L_1717003_1717308 0.00 0.32 0.00 0.77 0.00 0.00 0.59 0.00 0.60 0.00 0.00 0.75 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.27 0.67 0.00 0.00 0.00 0.61 0.00 1.52 1.96 6.43 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.70 0.00 0.00 0.46 2.69 0.20 0.00 0.00 0.00 0.00 0.49 0.45 0.94 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 K jcn_only_AD I_chr2R_2754447_2755071,Spn4,CG9454 chr2R - chr2R_2764239_2764449;chr2R_2764239_2764725 chr2R_2764239_2764302 chr2R_2764101_2764238 26.14 NA 15.00 NA NA NA NA 36.00 29.63 26.09 NA NA NA NA NA NA NA NA NA 18.52 NA NA NA 40.00 NA NA NA NA NA NA NA NA NA 42.31 NA NA NA NA NA 26.19 NA 40.91 NA NA 13.79 20.00 NA NA NA NA 18.18 NA NA NA NA NA 30.00 13.79 K mutually_exclusive Myo61F,mtacp1,I_chr3L_1330291_1330865,I_chr3L_1330291_1331279,RI_chr3L_1330929_1331041,l(3)02640 chr3L + chr3L_1330291_1331041,chr3L_1331171_1331279 chr3L_1330291_1330862,chr3L_1330965_1331279 chr3L_1331042_1331170 chr3L_1330863_1330964 chr3L_1330191_1330290;chr3L_1331280_1331379 47.81 46.57 47.98 66.67 46.63 48.88 62.28 52.79 47.94 48.87 53.28 50.75 54.55 45.40 47.84 47.47 44.12 45.41 47.10 49.77 49.35 31.87 48.01 44.30 48.63 51.90 45.82 50.17 68.15 50.71 45.58 45.73 47.07 46.33 49.31 53.53 44.06 45.88 42.71 50.35 55.59 48.29 48.19 38.57 46.43 47.56 42.38 56.53 46.17 47.81 49.02 48.57 39.73 42.38 46.01 44.39 41.33 43.78 K cassette CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_153858_155497 chr4_153858_154213;chr4_154340_155497 chr4_154214_154339 chr4_153815_153857;chr4_155498_155561 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 NA NA 100.00 NA NA 87.50 100.00 100.00 100.00 100.00 100.00 90.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 88.89 100.00 NA 100.00 100.00 100.00 NA 100.00 K cassette shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9758417_9759483 chr2R_9758417_9758798;chr2R_9758844_9759483 chr2R_9758799_9758843 chr2R_9758345_9758416;chr2R_9759484_9759658 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.28 100.00 100.00 100.00 98.48 100.00 100.00 100.00 98.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Pgi,I_chr2R_4801076_4801329 chr2R - chr2R_4801072_4801214;chr2R_4801134_4801214 chr2R_4801076_4801214 chr2R_4801215_4801631;chr2R_4800976_4801071 50.00 45.71 45.65 NA 57.50 44.44 NA 53.12 50.43 50.00 NA NA NA 50.00 44.44 46.15 NA 50.94 NA 53.41 NA 56.06 50.00 50.52 50.72 NA 44.83 53.03 24.14 NA NA 44.44 54.10 50.82 50.79 58.90 50.52 44.93 NA 55.10 53.33 54.87 NA 51.52 54.05 49.21 35.00 51.52 44.78 49.44 45.12 44.23 45.00 43.86 NA 44.44 NA NA K intron_retention Caki chr3R - chr3R_17612828_17612894 chr3R_17612827_17612828;chr3R_17612894_17612895 chr3R_17612652_17612827;chr3R_17612895_17613002 0.00 0.00 0.86 0.70 0.00 0.00 1.60 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 1.45 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG34449,I_chrX_9222628_9227416,RI_chrX_9232665_9233022,RI_chrX_9249209_9250033,RI_chrX_9249212_9250033,RI_chrX_9249212_9250244 chrX - chrX_9227656_9230957 chrX_9227655_9227656;chrX_9230957_9230958 chrX_9227417_9227655;chrX_9230958_9231270 17.95 25.45 22.86 17.50 16.67 24.14 17.65 21.15 23.38 11.84 20.59 25.00 19.35 34.62 16.00 34.48 22.86 17.95 17.65 19.61 15.62 2.08 16.90 11.94 24.14 27.03 15.28 6.85 13.92 12.05 17.78 20.00 5.92 18.52 15.00 8.93 21.35 7.35 10.77 24.73 21.74 22.89 18.52 13.58 16.22 15.94 27.50 8.87 23.94 36.17 13.51 17.50 18.00 25.00 14.58 29.41 24.32 14.77 K intron_retention RI_chr3R_205772_205830,Cont,I_chr3R_207254_207600 chr3R + chr3R_207252_207600 chr3R_207251_207252;chr3R_207600_207601 chr3R_207189_207251;chr3R_207601_207700 6.67 8.70 7.69 12.50 NA 12.50 10.00 21.05 8.20 0.00 NA 9.68 14.29 8.70 8.33 16.67 6.67 9.09 4.76 7.14 0.00 7.69 16.33 6.67 7.41 9.09 13.89 6.67 3.03 7.14 6.67 NA 6.25 0.00 12.50 8.33 0.00 0.00 0.00 2.94 0.00 6.35 0.00 2.82 0.00 0.00 NA 0.00 10.42 0.00 8.70 0.00 NA NA 9.52 6.67 0.00 0.00 K multi_cassette I_chr2L_822032_822857,dock chr2L + chr2L_826508_830737 chr2L_826508_829421;chr2L_829972_830144;chr2L_830350_830737 chr2L_829422_829971;chr2L_830145_830349 chr2L_826008_826507;chr2L_830738_830750 100.00 100.00 100.00 100.00 100.00 94.74 95.24 100.00 97.96 100.00 95.65 100.00 93.33 94.44 96.15 95.45 100.00 95.24 100.00 100.00 100.00 96.00 97.56 100.00 100.00 94.44 100.00 100.00 95.24 100.00 95.24 100.00 100.00 100.00 100.00 95.83 100.00 96.88 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 95.45 100.00 100.00 K jcn_only_AD Pi3K92E,I_chr3R_16459436_16459551,I_chr3R_16459436_16459848 chr3R - chr3R_16459436_16459848;chr3R_16459436_16460340;chr3R_16459436_16460287;chr3R_16459436_16459551 chr3R_16459436_16460267 chr3R_16459336_16459435;chr3R_16460341_16460435 80.77 78.38 87.50 67.61 64.00 75.86 83.61 79.41 83.95 96.15 85.71 76.19 84.38 76.27 81.82 69.33 72.50 72.22 84.09 79.37 87.50 79.31 79.71 93.48 90.32 91.11 76.09 89.29 85.71 75.00 77.55 NA 83.33 79.31 74.29 73.08 85.11 87.50 86.11 88.76 80.00 85.92 83.87 84.72 NA 80.77 69.57 85.29 83.33 NA 80.39 72.73 NA NA 80.39 68.18 84.00 NA N alternative_acceptor HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13164676_13165514;chrX_13164727_13165514 chrX_13164646_13165514 chrX_13165515_13165622;chrX_13164424_13164645 11.69 13.70 9.30 26.32 18.84 17.33 22.83 15.38 11.63 8.16 16.00 11.81 10.29 10.29 17.24 13.33 8.96 16.22 11.43 26.63 15.00 10.00 16.26 7.22 11.69 8.45 13.73 6.12 17.72 13.33 10.34 10.20 9.84 8.87 11.76 9.72 13.01 9.78 17.12 9.27 13.73 7.88 17.65 8.51 8.16 13.51 11.11 10.43 13.41 8.70 11.86 10.00 4.55 5.26 11.88 9.26 17.02 13.24 K intron_retention CG2201 chr2L - chr2L_21616574_21617279 chr2L_21616573_21616574;chr2L_21617279_21617280 chr2L_21616255_21616573;chr2L_21617280_21617432 5.33 3.85 6.67 3.45 0.00 3.45 6.06 3.85 4.30 11.76 9.52 3.51 16.67 6.67 6.82 4.08 7.89 7.41 8.82 3.92 5.71 5.88 3.85 4.76 0.00 6.67 0.00 NA 0.00 5.71 6.06 4.76 6.82 8.20 0.00 0.00 2.38 0.00 0.00 3.51 8.33 5.41 7.14 6.06 7.50 6.67 14.29 4.44 8.54 7.41 5.41 0.00 0.00 4.76 10.00 5.00 5.26 3.28 K alternative_acceptor Xe7,RI_chr3R_1493064_1493414,CRI_chr3R_1493111_1493414 chr3R - chr3R_1493028_1493414 chr3R_1493111_1493414 chr3R_1493415_1493514;chr3R_1493011_1493027 22.48 22.22 18.18 40.62 17.65 27.27 26.67 28.57 26.67 33.33 17.65 29.03 47.06 41.18 25.00 25.64 20.00 21.43 25.00 28.89 27.78 22.22 16.67 11.76 NA 17.39 23.08 14.29 10.53 28.57 26.09 6.67 22.73 26.67 20.00 28.57 15.38 5.88 14.29 16.22 10.00 29.03 22.22 23.53 11.76 16.00 20.00 28.12 21.05 22.73 21.43 30.77 17.39 23.81 26.32 16.67 22.73 16.22 K jcn_only_AA Ptp99A,I_chr3R_25302126_25302175 chr3R + chr3R_25309466_25310173 chr3R_25309466_25309678 chr3R_25309191_25309465;chr3R_25310174_25310193 92.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 92.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette SPoCk,I_chr3L_22776339_22776519,I_chr3L_22777865_22778359 chr3L + chr3L_22766852_22770210;chr3L_22766817_22770210 chr3L_22766817_22767837,chr3L_22766852_22767837;chr3L_22768238_22770210 chr3L_22767838_22768237 chr3L_22766783_22766816;chr3L_22770211_22771924 50.82 59.46 56.41 37.70 43.24 53.12 60.00 37.70 51.76 56.52 46.67 75.00 42.86 50.00 52.17 53.19 54.84 29.17 45.71 90.00 59.09 46.15 45.71 43.14 40.54 60.00 58.49 40.62 71.79 42.50 55.00 64.29 44.12 50.82 50.00 81.58 45.90 40.00 50.00 60.00 62.50 47.62 52.78 42.11 50.00 58.14 44.00 60.00 52.24 34.48 60.00 50.00 52.17 47.06 39.58 52.00 38.10 57.14 K intron_retention Polycomblike chr2R + chr2R_14025149_14025203 chr2R_14025148_14025149;chr2R_14025203_14025204 chr2R_14024976_14025148;chr2R_14025204_14026278 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.52 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 K jcn_only_AD CG17471,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1217104_1217333;chr4_1217104_1217302;chr4_1217104_1217383 chr4_1217104_1217473 chr4_1217009_1217103;chr4_1217474_1217480 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor casp,EI_chr2R_11914764_11914841 chr2R - chr2R_11914784_11914841;chr2R_11914769_11914841 chr2R_11914764_11914841 chr2R_11914842_11914941;chr2R_11914664_11914763 2.63 0.00 0.00 2.63 0.00 0.00 2.63 0.00 2.00 4.76 5.00 2.38 4.17 0.00 0.00 0.00 4.76 3.85 5.26 2.22 0.00 3.64 3.03 0.00 0.00 0.00 3.12 0.00 3.57 3.12 11.43 9.09 2.94 0.00 4.55 4.76 3.33 3.57 3.85 2.08 2.94 1.96 5.88 6.06 0.00 3.03 4.76 13.21 2.38 0.00 0.00 6.25 0.00 7.14 0.00 4.35 0.00 0.00 K cassette noncoding_5243,I_chr2R_4553376_4563976,l(2)44DEa,I_chr2R_4553577_4562151,I_chr2R_4553817_4565934,I_chr2R_4554300_4563976,I_chr2R_4565692_4565934 chr2R + chr2R_4553376_4563976;chr2R_4553817_4562151;chr2R_4553577_4562151;chr2R_4553817_4563976;chr2R_4553376_4562151 chr2R_4553817_4554272,chr2R_4553376_4554272,chr2R_4553577_4554272;chr2R_4554300_4562151,chr2R_4554300_4563976 chr2R_4554273_4554299 chr2R_4553371_4553375;chr2R_4563977_4564076 9.38 7.69 9.21 6.84 11.76 8.47 14.05 9.09 9.09 14.29 9.38 4.86 9.80 7.23 6.56 5.61 10.45 6.38 7.14 12.26 9.09 7.32 15.00 17.65 9.68 7.50 13.04 8.70 14.71 9.38 4.88 6.67 8.82 8.72 4.00 11.32 17.39 22.22 16.00 11.94 11.11 11.38 5.88 17.95 21.43 6.67 14.81 6.06 9.52 19.05 14.29 8.33 4.35 15.79 11.36 19.05 15.00 3.03 K intron_retention CG5746 chr3R - chr3R_20172483_20172538 chr3R_20172482_20172483;chr3R_20172538_20172539 chr3R_20172414_20172482;chr3R_20172539_20172607 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.74 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chr3R_205772_205830,Cont,I_chr3R_207254_207600 chr3R + chr3R_208540_208591 chr3R_208539_208540;chr3R_208591_208592 chr3R_207601_208539;chr3R_208592_210277 0.00 0.00 0.00 3.57 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 3.45 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 K intron_retention RI_chrX_18544139_18544185,Ing3 chrX - chrX_18546821_18546896 chrX_18546820_18546821;chrX_18546896_18546897 chrX_18544717_18546820;chrX_18546897_18547079 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.04 6.67 15.38 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.85 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr2R_17169674_17170491,CG10069,I_chr2R_17169897_17170495,I_chr2R_17170432_17170491,I_chr2R_17171765_17171886 chr2R + chr2R_17170070_17170491 chr2R_17170069_17170070;chr2R_17170491_17170492 chr2R_17170059_17170069;chr2R_17170492_17170591 19.52 NA NA NA NA NA 22.22 19.05 NA NA NA 20.00 NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG3534,I_chr3R_12822371_12823186 chr3R + chr3R_12822371_12822774 chr3R_12822370_12822371;chr3R_12822774_12822775 chr3R_12822271_12822370;chr3R_12822775_12822896 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 2.86 0.00 0.00 0.00 K alternative_donor CG4699 chr3R + chr3R_11619752_11620550;chr3R_11619772_11620550;chr3R_11619570_11620550;chr3R_11619676_11620550 chr3R_11619776_11620550 chr3R_11620551_11621301;chr3R_11619539_11619569 18.52 33.33 16.00 14.29 33.33 11.11 25.00 11.90 24.44 40.00 26.32 11.11 13.64 22.73 17.24 6.12 21.05 15.38 14.81 16.33 22.22 21.74 18.18 19.05 26.67 9.68 21.43 25.00 14.29 27.78 6.06 0.00 35.71 17.50 10.53 18.75 21.05 14.29 18.75 24.00 33.33 15.38 15.38 17.65 22.22 35.71 7.14 22.22 13.73 38.46 18.52 15.79 10.00 42.86 17.39 27.27 33.33 16.67 K alternative_acceptor CG13747 chr2R + chr2R_4906154_4906220 chr2R_4906154_4906206 chr2R_4906003_4906153;chr2R_4906221_4906517 100.00 NA NA 100.00 NA NA 100.00 100.00 94.44 NA NA 87.50 NA NA NA NA NA NA 100.00 88.89 NA 100.00 NA 85.71 NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA 90.91 NA 100.00 NA 93.33 NA 85.71 100.00 NA 90.00 100.00 90.91 NA 100.00 NA NA 100.00 93.33 90.91 K intron_retention CG5522 chr2R + chr2R_12677141_12677216 chr2R_12677140_12677141;chr2R_12677216_12677217 chr2R_12676689_12677140;chr2R_12677217_12677420 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 1.12 1.69 1.64 0.00 0.00 0.00 0.00 0.00 0.00 1.54 1.37 0.00 0.00 1.70 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD scra,EI_chr2R_3480349_3480405 chr2R + chr2R_3480833_3480922 chr2R_3480866_3480922 chr2R_3480923_3481286;chr2R_3480644_3480832 99.57 99.57 100.00 100.00 100.00 99.25 100.00 99.58 100.00 99.11 99.33 99.71 100.00 100.00 99.45 100.00 99.35 100.00 98.73 99.57 98.59 100.00 100.00 100.00 98.73 99.35 100.00 100.00 99.29 99.46 99.09 99.22 99.25 99.26 100.00 100.00 99.06 100.00 99.40 99.15 97.65 99.73 99.22 98.92 99.50 100.00 99.07 100.00 99.69 99.12 100.00 99.39 100.00 100.00 98.84 98.58 99.34 100.00 K intron_retention Gprk2 chr3R + chr3R_27259611_27279032 chr3R_27259610_27259611;chr3R_27279032_27279033 chr3R_27259181_27259610;chr3R_27279033_27279128 18.09 20.00 18.52 11.63 NA 21.43 36.84 30.43 35.71 14.29 8.33 20.83 36.00 31.25 20.69 25.93 23.81 8.33 18.52 15.09 14.29 5.41 19.05 16.67 NA 20.00 17.24 NA 10.53 6.06 31.03 NA 3.85 22.73 29.41 9.68 9.09 17.65 17.65 22.86 33.33 17.39 31.58 9.30 NA 10.53 0.00 16.28 31.82 NA 21.74 25.00 0.00 NA 24.00 14.29 11.76 13.04 K alternative_donor l(2)tid chr2R + chr2R_19595998_19596152 chr2R_19596011_19596152 chr2R_19596153_19596758;chr2R_19594625_19595997 64.52 63.27 60.00 66.67 72.00 55.88 60.71 45.71 63.24 60.00 73.33 66.13 80.00 69.57 70.27 55.56 65.00 57.89 54.55 65.15 63.64 65.91 54.10 62.30 71.88 67.86 64.71 70.73 64.52 69.77 65.38 52.83 62.50 66.67 66.67 68.57 58.24 56.52 63.93 77.97 66.67 64.86 81.82 62.96 53.41 66.67 65.28 62.12 59.26 71.43 61.22 56.67 57.14 55.00 65.52 67.80 58.16 46.25 K intron_retention Rph,I_chrX_10644396_10644958,I_chrX_10647710_10648325,RI_chrX_10649048_10651427 chrX - chrX_10644128_10644188 chrX_10644127_10644128;chrX_10644188_10644189 chrX_10643136_10644127;chrX_10644189_10644395 0.00 1.92 0.00 2.94 0.00 0.00 1.61 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 3.17 8.11 0.00 0.00 0.00 1.67 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 2.70 2.54 0.00 2.38 0.00 0.00 0.00 0.00 3.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3L_1494947_1496080,pUf68,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1501407_1501798 chr3L_1501406_1501407;chr3L_1501798_1501799 chr3L_1501351_1501406;chr3L_1501799_1501892 35.71 NA NA NA NA NA NA 41.18 40.00 NA NA 42.11 35.71 NA 69.23 NA NA NA 46.15 54.55 25.00 NA 35.29 NA NA NA NA NA NA NA 21.05 NA NA 50.00 NA NA NA NA NA 20.00 30.77 35.00 NA 23.08 NA 23.08 NA 21.43 55.56 NA 40.00 NA NA NA NA NA NA NA K alternative_donor CG14872,REI_chr3R_11334285_11334336 chr3R - chr3R_11334285_11334385 chr3R_11334285_11334336 chr3R_11334185_11334284;chr3R_11334386_11334436 12.12 13.33 14.00 9.80 16.67 10.00 26.23 12.82 12.30 3.85 14.71 18.57 12.50 11.63 9.26 12.68 17.95 10.91 10.00 14.44 12.90 6.85 8.24 11.29 2.63 10.00 4.82 7.55 12.12 11.43 13.79 8.62 10.53 18.18 10.00 16.39 9.09 9.80 9.76 12.79 5.94 15.91 17.65 12.50 12.99 6.87 13.51 6.74 13.98 16.33 13.19 7.69 14.00 17.65 10.00 11.90 9.30 12.40 K jcn_only_AA Nop60B,AT25722,F_chr2R_20073291_20073744,snoRNA:Or-CD9a,snmRNA:60Ca chr2R + chr2R_20073291_20073744 chr2R_20073291_20073510 chr2R_20073238_20073290;chr2R_20073745_20073751 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 95.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 100.00 K alternative_acceptor spn-F chr3R + chr3R_27081692_27081759 chr3R_27081692_27081756 chr3R_27080864_27081691;chr3R_27081760_27082388 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette trol,I_chrX_2384846_2385177,I_chrX_2387249_2389980,I_chrX_2391522_2395659 chrX - chrX_2384876_2385351 chrX_2384876_2385177;chrX_2385268_2385351 chrX_2385178_2385267 chrX_2384489_2384875;chrX_2385352_2385445 0.00 0.00 0.00 1.64 0.00 0.00 2.04 0.00 0.61 2.44 2.50 0.00 0.00 0.00 1.54 1.85 0.00 16.67 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 1.69 4.55 10.26 0.00 1.72 0.00 0.88 0.00 0.00 1.45 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 N intron_retention RpL13A,I_chr3R_1450243_1451235,EI_chr3R_1450853_1451054,snoRNA:Me28S-U2134b,snoRNA:Me28S-U2134a chr3R + chr3R_1450853_1451134 chr3R_1450852_1450853;chr3R_1451134_1451135 chr3R_1450753_1450852;chr3R_1451135_1451154 100.00 NA NA NA NA NA 42.86 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA 31.58 NA 100.00 NA 25.00 NA 100.00 100.00 NA NA NA NA NA NA 100.00 NA NA NA 100.00 29.03 100.00 NA NA NA NA NA 46.15 NA NA NA NA NA 100.00 NA NA NA 100.00 K jcn_only_AA CG12030 chr3L + chr3L_649052_649178 chr3L_649052_649125 chr3L_648517_649051;chr3L_649179_649419 0.00 0.00 0.09 0.00 0.00 0.10 0.08 0.05 0.00 0.20 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD gro chr3R + chr3R_21868657_21868716;chr3R_21868626_21868716 chr3R_21868622_21868716 chr3R_21868717_21869101;chr3R_21868588_21868621 39.13 NA NA NA NA NA NA NA 39.13 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 45.00 NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA Hml chr3L + chr3L_13840287_13840350 chr3L_13840287_13840347 chr3L_13840122_13840286;chr3L_13840351_13840740 84.00 84.00 NA 88.68 NA 84.00 90.48 78.79 85.37 NA 96.43 83.61 82.50 66.67 90.32 77.42 95.00 81.82 85.71 89.13 80.00 NA 76.92 NA NA 90.00 93.75 NA NA NA NA NA NA 86.00 NA NA 83.33 NA NA 83.64 NA 82.61 85.29 76.67 NA NA NA 88.24 85.42 NA NA NA NA NA 75.00 NA NA 77.27 K jcn_only_AD RpL27A,E_chr2L_4457411_4457977,I_chr2L_4457510_4457892,snoRNA:Me18S-C1831,I_chr2L_4458058_4458120 chr2L - chr2L_4457510_4457892 chr2L_4457510_4457739 chr2L_4457412_4457509;chr2L_4457893_4457992 99.99 100.00 100.00 99.95 100.00 100.00 99.99 99.99 99.99 100.00 100.00 99.99 99.97 100.00 100.00 99.97 99.99 100.00 100.00 99.99 99.99 99.55 99.99 100.00 99.97 99.96 99.99 100.00 99.98 100.00 100.00 99.99 100.00 99.99 99.99 99.99 100.00 100.00 99.98 99.99 100.00 100.00 99.98 100.00 99.99 100.00 99.99 99.99 99.98 100.00 99.99 100.00 100.00 99.99 100.00 100.00 100.00 100.00 K jcn_only_AD CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3071298_3073080;chr3L_3071308_3073080 chr3L_3071190_3073080 chr3L_3073081_3073149;chr3L_3071183_3071189 76.19 NA NA NA NA NA NA 57.69 NA NA NA 59.09 NA NA NA 86.49 NA NA NA 92.31 NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA 76.19 NA NA NA NA NA NA 85.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA rdgA chrX + chrX_8910362_8911876;chrX_8910362_8911894 chrX_8910362_8911891 chrX_8910158_8910361;chrX_8911895_8912021 4.17 NA NA NA NA 0.00 NA NA 6.00 NA NA 8.70 NA NA NA NA NA NA NA 3.33 NA 4.76 5.00 NA NA NA NA NA NA NA NA NA NA 3.45 NA NA 0.00 NA 11.11 NA NA 19.23 NA NA NA NA NA NA 3.57 NA NA NA NA NA 3.33 NA NA NA K jcn_only_AA E_chr3R_20923460_20923586,CG33096,CG33095 chr3R + chr3R_20923441_20923586 chr3R_20923441_20923556 chr3R_20923364_20923440;chr3R_20923587_20923686 100.00 NA NA NA NA NA NA 95.83 NA NA NA NA NA NA NA 100.00 NA NA NA 96.15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG4272 chr2L + chr2L_2365729_2366274;chr2L_2365902_2366274 chr2L_2365391_2366274 chr2L_2366275_2368213;chr2L_2365332_2365390 0.00 3.85 NA 0.00 0.00 NA 0.00 0.00 3.57 0.00 0.00 5.41 3.57 0.00 0.00 0.00 0.00 4.76 3.23 0.00 NA 4.17 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA 3.57 0.00 0.00 4.76 0.00 3.33 0.00 0.00 NA 0.00 0.00 2.94 NA NA NA 0.00 3.23 4.00 4.76 0.00 NA NA 3.85 NA NA NA K intron_retention CG32027 chr3L + chr3L_18835367_18835445 chr3L_18835366_18835367;chr3L_18835445_18835446 chr3L_18835317_18835366;chr3L_18835446_18835505 53.33 NA NA 60.00 NA NA 75.00 61.11 47.37 NA NA 66.67 30.77 NA NA 47.06 NA NA 70.00 61.11 NA NA 50.00 NA NA 54.55 88.89 NA NA NA 41.67 NA NA 53.33 NA 45.45 NA NA 21.43 35.71 60.00 47.06 87.50 NA NA 41.67 NA 53.33 45.45 35.71 71.43 NA NA NA 46.67 NA NA 61.54 K intron_retention I_chr3L_212783_212843,Kaz1-ORFB,Kaz1-ORFA_Kaz1-ORFB,CG13877 chr3L + chr3L_218196_218282 chr3L_218195_218196;chr3L_218282_218283 chr3L_218127_218195;chr3L_218283_218658 5.88 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 11.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG5872,RI_chr3L_20430213_20430346,RI_chr3L_20430213_20430358 chr3L + chr3L_20430213_20430353;chr3L_20430213_20430346 chr3L_20430213_20430358 chr3L_20430113_20430212;chr3L_20430359_20430446 7.14 NA NA NA NA NA NA NA 4.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 9.52 NA NA NA NA NA NA NA NA 4.76 NA NA NA 9.52 NA 12.82 4.76 NA NA NA NA NA NA NA NA 19.51 K intron_retention I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17190715_17200781 chr3R_17190714_17190715;chr3R_17200781_17200782 chr3R_17190579_17190714;chr3R_17200782_17200881 0.00 0.00 0.00 0.00 NA NA NA 12.50 0.00 NA NA 11.54 14.29 NA NA 4.76 NA 0.00 NA 1.96 NA 0.00 0.00 7.41 0.00 NA 0.00 0.00 7.69 0.00 NA 0.00 0.00 0.00 10.53 0.00 0.00 0.00 2.70 2.13 3.12 8.82 NA NA 0.00 0.00 6.06 4.76 12.00 0.00 0.00 7.69 0.00 0.00 NA 0.00 0.00 0.00 K jcn_only_AA CG9205,RI_chr3L_1035462_1035545 chr3L + chr3L_1035462_1035559 chr3L_1035462_1035545 chr3L_1035393_1035461;chr3L_1035560_1035628 0.41 0.29 0.62 0.51 0.00 0.62 0.00 0.48 0.18 0.00 0.00 0.19 0.00 0.41 0.49 1.07 0.00 0.35 0.00 0.00 0.00 0.00 0.67 0.80 0.52 0.00 0.88 0.43 0.49 0.00 2.28 0.00 0.43 0.49 0.47 0.00 0.33 0.61 0.21 0.45 0.55 0.00 0.41 0.69 0.85 1.14 0.32 0.43 0.24 0.69 0.00 0.65 0.00 0.00 0.00 0.35 0.61 0.63 N alternative_acceptor cbs,I_chr2R_9340512_9340593 chr2R + chr2R_9339532_9339826 chr2R_9339532_9339794 chr2R_9339433_9339531;chr2R_9339827_9340240 10.81 4.00 5.00 13.79 16.67 7.14 7.41 14.71 9.80 NA 0.00 10.81 17.65 6.90 5.56 13.79 17.65 11.11 16.67 14.29 10.53 33.33 21.43 16.67 18.75 10.53 8.11 NA NA 14.29 7.41 15.38 21.74 10.81 11.76 NA 5.56 NA 17.65 10.00 10.00 10.53 5.56 9.09 41.67 10.71 20.00 4.35 8.11 12.50 16.00 12.50 NA 5.56 8.33 9.52 16.67 0.00 K cassette coro,I_chr2R_2752880_2760038,I_chr2R_2753390_2754191,I_chr2R_2754447_2754986,I_chr2R_2754447_2755071 chr2R - chr2R_2752880_2760038 chr2R_2752880_2754191;chr2R_2754447_2760038 chr2R_2754192_2754446 chr2R_2752780_2752879;chr2R_2760039_2760138 99.51 100.00 99.27 94.07 100.00 100.00 99.25 99.33 100.00 99.04 98.82 100.00 100.00 100.00 99.24 100.00 98.84 100.00 99.08 99.65 100.00 97.42 99.62 99.51 97.89 98.40 99.50 99.29 99.45 100.00 100.00 100.00 100.00 99.41 100.00 99.45 99.64 99.45 99.64 99.36 96.88 99.59 98.81 99.46 100.00 99.01 99.30 99.64 99.51 99.23 99.49 100.00 100.00 100.00 100.00 99.24 99.18 100.00 K intron_retention Syb chr2R - chr2R_6138650_6139432 chr2R_6138649_6138650;chr2R_6139432_6139433 chr2R_6138448_6138649;chr2R_6139433_6139489 20.32 18.82 19.15 21.60 24.39 17.38 22.82 18.90 21.71 24.74 21.11 18.79 20.16 15.58 19.40 19.35 18.82 21.26 20.00 20.40 20.32 25.25 18.94 22.06 18.52 19.94 32.16 38.85 29.26 25.35 17.06 19.70 25.76 18.09 15.75 14.43 25.64 21.55 21.24 27.29 24.63 21.68 17.86 28.07 26.82 21.77 20.00 32.02 17.04 20.00 19.95 23.98 19.39 15.44 18.20 18.14 22.43 27.36 K alternative_donor CG32803,I_chrX_1795047_1795115,RI_chrX_1795648_1795745,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1795047_1795115 chrX_1795047_1795097 chrX_1794947_1795046;chrX_1795116_1795215 96.67 100.00 100.00 100.00 100.00 100.00 90.91 93.75 95.45 100.00 94.12 96.08 100.00 100.00 96.67 100.00 100.00 96.00 95.65 100.00 95.83 90.00 97.67 96.67 94.44 92.86 96.88 100.00 82.61 96.30 100.00 100.00 100.00 97.73 95.24 95.24 91.18 100.00 97.06 94.29 94.74 97.96 84.21 96.97 100.00 92.00 92.45 92.31 95.56 97.22 96.43 94.12 91.30 97.44 97.06 97.14 100.00 94.12 K intron_retention CREF_chr3R_5589662_5589762,RpS29,CG12947,CG8500 chr3R + chr3R_5607950_5608007 chr3R_5607949_5607950;chr3R_5608007_5608008 chr3R_5607419_5607949;chr3R_5608008_5608202 0.00 0.00 NA 21.74 NA NA NA NA 0.00 NA NA NA NA NA NA 8.70 NA NA NA 0.00 NA 5.71 10.00 NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 7.14 0.00 12.50 0.00 NA NA 0.00 0.00 NA 10.53 14.29 0.00 0.00 NA NA NA NA 5.56 0.00 0.00 K intron_retention cact,RI_chr2L_16314859_16315116,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16325055_16325493 chr2L_16325054_16325055;chr2L_16325493_16325494 chr2L_16324333_16325054;chr2L_16325494_16325583 0.75 0.00 0.00 2.44 0.00 0.00 3.39 1.96 2.11 0.00 0.00 2.14 0.00 0.00 1.33 2.40 2.56 0.00 0.00 4.23 0.00 7.00 2.22 1.75 0.00 2.94 0.00 3.08 4.00 0.00 0.00 0.00 2.13 2.46 0.00 0.00 1.96 0.00 0.00 0.00 0.00 2.60 6.78 1.01 1.82 0.00 2.35 1.03 0.75 2.70 0.00 0.00 1.37 3.08 2.20 0.00 0.00 0.00 K cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27707594_27784756;chr3R_27707594_27757793 chr3R_27707594_27747354;chr3R_27747397_27757793,chr3R_27747397_27784756 chr3R_27747355_27747396 chr3R_27707494_27707593;chr3R_27784757_27784846 4.35 NA NA 12.00 4.17 NA 4.35 5.56 4.88 14.29 0.00 5.41 0.00 4.17 3.23 0.00 NA 0.00 4.76 5.71 0.00 7.14 8.33 0.00 6.67 0.00 0.00 NA 15.38 7.69 0.00 NA 4.55 0.00 NA 0.00 5.26 0.00 5.56 3.45 NA 2.63 NA 6.06 NA 6.67 4.76 0.00 2.70 5.00 5.88 0.00 NA NA 0.00 7.69 0.00 12.00 K alternative_acceptor RPA2,RI_chr2L_20925851_20925909 chr2L - chr2L_20925844_20925909 chr2L_20925851_20925909 chr2L_20925910_20925975;chr2L_20925751_20925843 100.00 100.00 94.74 100.00 100.00 100.00 90.00 95.65 100.00 100.00 100.00 94.12 100.00 NA 100.00 100.00 100.00 NA 100.00 96.67 100.00 95.24 96.77 100.00 100.00 100.00 95.45 100.00 95.45 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 94.44 100.00 97.78 K intron_retention CG4936 chr3R + chr3R_15859349_15859763 chr3R_15859348_15859349;chr3R_15859763_15859764 chr3R_15859238_15859348;chr3R_15859764_15860082 6.19 2.50 6.67 12.33 5.77 5.77 6.25 7.06 6.47 0.00 4.92 7.61 5.00 0.00 6.06 6.33 3.64 6.45 6.45 3.65 0.00 8.20 9.17 5.50 8.33 7.14 10.31 8.06 3.03 5.88 4.44 8.47 6.67 6.49 5.77 4.62 4.69 6.36 3.60 4.59 2.50 4.27 5.71 8.57 3.60 6.67 5.06 5.36 8.57 8.57 6.19 5.36 7.25 2.22 7.46 6.31 8.76 7.41 K intron_retention glob1 chr3R - chr3R_11723432_11723496 chr3R_11723431_11723432;chr3R_11723496_11723497 chr3R_11723270_11723431;chr3R_11723497_11723737 0.00 0.00 0.00 0.00 2.56 0.00 0.00 1.08 0.00 0.00 0.00 1.09 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 2.70 0.00 0.00 1.19 0.00 1.14 2.86 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 K intron_retention Moe,I_chrX_8774434_8791759 chrX - chrX_8785657_8792216 chrX_8785656_8785657;chrX_8792216_8792217 chrX_8785595_8785656;chrX_8792217_8792259 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.79 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette eIF-4E,RI_chr3L_9394049_9394139,RI_chr3L_9394054_9394756,I_chr3L_9394308_9394756,RI_chr3L_9394468_9394631,I_chr3L_9394468_9394659,I_chr3L_9394468_9395155,I_chr3L_9394468_9395240,I_chr3L_9394468_9395446,I_chr3L_9394819_9395198,I_chr3L_9394819_9395379 chr3L - chr3L_9394054_9395379 chr3L_9394054_9394139;chr3L_9394468_9395379 chr3L_9394140_9394467 chr3L_9393954_9394053;chr3L_9395380_9395409 85.04 80.32 85.65 70.77 85.47 86.29 86.72 84.57 87.42 80.39 93.40 86.13 89.50 86.43 81.78 88.81 86.90 84.34 92.24 84.21 88.72 94.61 78.93 79.26 69.41 80.49 74.90 66.81 82.87 87.34 88.15 87.38 91.19 85.45 79.56 77.87 82.01 81.91 82.25 89.07 85.31 86.36 82.54 90.52 88.49 88.11 77.85 89.71 84.82 78.33 80.99 82.91 79.67 73.95 88.17 76.74 85.04 89.36 K intron_retention I_chrX_1798310_1798525,eIF2B-epsilon chrX - chrX_1816701_1816763 chrX_1816700_1816701;chrX_1816763_1816764 chrX_1816576_1816700;chrX_1816764_1816960 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 6.25 2.22 0.00 2.97 0.00 0.00 0.00 0.00 0.00 0.47 0.00 1.58 1.40 0.75 0.00 0.00 0.93 0.00 0.00 0.74 0.41 1.13 0.00 0.00 0.00 0.00 0.00 0.00 1.40 0.00 0.00 K intron_retention CG10428 chr2L + chr2L_18949373_18949428 chr2L_18949372_18949373;chr2L_18949428_18949429 chr2L_18949203_18949372;chr2L_18949429_18949894 1.61 NA 0.00 5.26 NA 0.00 4.55 7.14 14.29 NA 14.29 3.85 0.00 0.00 0.00 0.00 NA NA 0.00 4.35 NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA 3.23 NA NA NA NA NA NA NA 5.71 NA NA NA NA NA NA 6.67 NA NA NA NA NA 0.00 NA NA NA K intron_retention CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789616_9789674 chr2L_9789615_9789616;chr2L_9789674_9789675 chr2L_9789594_9789615;chr2L_9789675_9789693 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 3.12 0.00 0.00 0.00 0.00 0.00 0.68 1.14 0.00 0.00 0.00 0.00 0.00 1.15 K intron_retention synj,I_chr2R_17968269_17968579 chr2R + chr2R_17972430_17972496 chr2R_17972429_17972430;chr2R_17972496_17972497 chr2R_17970210_17972429;chr2R_17972497_17973112 23.08 17.86 23.26 36.67 18.92 17.39 28.00 29.85 20.00 32.00 31.03 21.33 16.13 35.00 31.82 31.25 24.24 19.44 26.83 23.08 26.67 5.49 25.33 19.48 23.40 43.59 43.33 43.28 51.85 21.74 25.53 32.43 20.83 16.92 21.57 24.44 11.24 12.24 15.29 17.39 42.86 24.18 27.50 12.50 24.19 37.74 12.90 45.24 19.48 16.90 18.33 20.00 19.30 21.74 22.64 15.49 15.46 35.19 K alternative_donor Eip71CD chr3L + chr3L_15505454_15505575 chr3L_15505466_15505575 chr3L_15505576_15505836;chr3L_15505274_15505453 57.89 55.17 57.14 69.23 68.75 83.33 57.14 64.52 50.00 50.00 78.57 51.43 60.00 60.00 73.91 59.38 73.33 53.33 57.14 51.92 68.42 45.45 61.36 45.95 45.45 47.06 58.62 71.43 53.33 58.82 68.18 50.00 46.67 64.52 60.00 56.00 50.00 60.00 50.00 58.33 57.89 48.98 63.64 54.72 58.06 59.09 56.10 52.17 44.74 70.83 52.38 58.06 53.33 51.52 51.72 62.00 58.49 62.50 K intron_retention CE_chrX_20766225_20927825,CG1532,I_chrX_20898872_20898925,RI_chrX_20902550_20902613 chrX - chrX_20898872_20898929 chrX_20898871_20898872;chrX_20898929_20898930 chrX_20898772_20898871;chrX_20898930_20898979 2.44 3.57 2.08 1.08 0.00 2.53 2.44 4.20 4.88 3.33 0.00 2.40 0.00 1.82 5.21 3.12 4.84 2.90 3.37 2.58 1.54 0.00 1.56 1.23 0.00 5.63 3.23 10.00 3.12 0.00 4.55 0.00 3.15 1.77 0.00 1.92 3.64 3.77 0.00 6.74 3.28 2.67 3.28 3.45 1.83 0.00 8.00 0.00 2.14 0.00 3.28 5.71 0.00 2.38 0.00 0.00 3.85 1.29 K intron_retention CG8449,RI_chr3R_9096632_9096844 chr3R - chr3R_9096632_9096690 chr3R_9096631_9096632;chr3R_9096690_9096691 chr3R_9096532_9096631;chr3R_9096691_9096787 21.43 24.00 NA 38.46 NA 14.29 33.33 5.00 15.62 NA 33.33 16.67 NA 21.43 6.67 22.22 NA NA 20.00 25.93 NA 35.00 26.92 22.22 36.84 36.36 22.22 NA 39.13 12.50 50.00 NA 14.29 21.05 17.65 56.25 22.45 19.05 22.22 16.13 22.22 20.00 7.14 26.92 13.04 35.71 13.79 19.05 16.67 19.05 18.42 28.57 13.64 25.00 20.00 31.82 15.38 NA K alternative_acceptor EDTP chr2R - chr2R_13320840_13320924;chr2R_13320861_13320924 chr2R_13320873_13320924 chr2R_13320925_13321563;chr2R_13320696_13320839 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K jcn_only_AA CG7546 chr3L + chr3L_7509151_7509218 chr3L_7509151_7509215 chr3L_7508971_7509150;chr3L_7509219_7509646 97.67 97.08 98.96 97.74 95.35 98.82 96.53 96.38 96.34 98.41 98.00 97.96 97.67 97.26 96.26 100.00 94.81 97.00 97.10 98.12 98.70 97.73 97.66 98.86 97.25 100.00 97.65 100.00 97.78 100.00 96.91 98.11 96.18 95.28 92.77 100.00 98.39 97.60 97.07 97.17 95.45 98.06 96.88 100.00 98.16 97.47 100.00 97.03 96.47 98.52 97.95 94.38 98.17 98.25 94.81 99.24 99.29 97.06 K intron_retention CG14814,I_chrX_1757755_1757801 chrX - chrX_1759656_1759721 chrX_1759655_1759656;chrX_1759721_1759722 chrX_1758203_1759655;chrX_1759722_1759831 47.06 47.06 53.85 69.23 41.67 41.67 NA 52.38 37.50 NA NA 39.13 NA 77.78 47.06 30.43 54.55 NA NA 43.48 NA 60.00 40.00 40.00 NA NA 66.67 NA NA NA 28.57 NA 53.85 57.14 53.33 69.23 34.62 36.36 17.65 25.00 NA 53.85 66.67 NA NA 30.77 36.36 50.00 70.59 NA 56.25 NA NA NA 66.67 NA NA 46.15 K alternative_acceptor Eph,I_chr4_639690_640473,I_chr4_640410_640485,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_640410_640485 chr4_640410_640473 chr4_640310_640409;chr4_640486_640573 100.00 100.00 100.00 97.22 93.75 94.44 100.00 97.56 97.37 100.00 94.44 97.50 100.00 100.00 95.00 100.00 100.00 100.00 96.30 97.56 100.00 100.00 100.00 95.00 100.00 94.74 94.74 NA 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 95.45 100.00 97.87 92.86 97.56 97.44 100.00 100.00 94.44 100.00 100.00 100.00 95.45 100.00 97.50 K alternative_donor CG15609,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12902708_12903184;chr2R_12902708_12903198;chr2R_12902708_12903167 chr2R_12902708_12903163 chr2R_12902608_12902707;chr2R_12903199_12903284 41.67 29.41 50.00 46.88 42.86 47.06 50.00 51.35 44.74 45.45 37.50 44.44 40.91 55.56 31.25 37.50 46.67 46.15 40.00 32.35 54.55 57.14 33.33 53.33 64.29 33.33 17.39 42.86 40.00 31.25 44.00 33.33 37.50 37.14 45.00 20.83 41.67 46.67 38.46 31.03 33.33 37.14 40.00 52.17 50.00 57.14 33.33 38.89 41.18 50.00 50.00 58.33 22.22 45.45 33.33 41.67 50.00 30.00 K intron_retention Ac3,I_chr2L_21635211_21637957,I_chr2L_21643253_21646594 chr2L + chr2L_21641014_21641072 chr2L_21641013_21641014;chr2L_21641072_21641073 chr2L_21640730_21641013;chr2L_21641073_21641079 2.78 NA NA NA NA NA NA NA 9.52 NA NA 6.25 NA NA NA 5.88 NA NA NA 10.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 5.56 NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20827154_20827496 chr2L_20827158_20827496 chr2L_20827497_20827676;chr2L_20827119_20827153 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.79 99.88 100.00 100.00 100.00 100.00 100.00 99.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.64 100.00 100.00 100.00 99.76 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.80 99.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_last_exon RI_chr3R_19759126_19759198,Gdh,E_chr3R_19762765_19768309 chr3R - chr3R_19762368_19763144 chr3R_19762742_19763144 chr3R_19759199_19762367 chr3R_19762673_19762741 chr3R_19763145_19763349 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 27.27 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 7.14 0.00 6.67 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pcf11 chr2R - chr2R_10756538_10757553 chr2R_10756537_10756538;chr2R_10757553_10757554 chr2R_10756412_10756537;chr2R_10757554_10757817 26.32 30.00 27.27 19.23 18.75 16.67 25.71 43.90 26.23 20.00 60.00 30.95 48.00 36.84 23.08 31.82 13.04 20.00 35.48 23.40 22.22 9.68 17.86 27.78 22.22 26.32 33.33 41.67 20.00 19.35 21.05 30.77 32.14 35.71 28.57 33.33 41.67 25.00 30.77 26.19 40.00 34.15 21.74 25.00 26.67 29.17 23.08 14.63 28.07 16.67 19.35 26.32 36.36 NA 21.43 53.33 NA 30.00 K jcn_only_AA CG34015 chrX - chrX_16341991_16342063 chrX_16341996_16342063 chrX_16342064_16342132;chrX_16341931_16341990 100.00 96.67 100.00 100.00 95.83 NA 97.96 98.00 95.00 NA NA 100.00 95.24 100.00 100.00 96.15 100.00 100.00 91.67 97.56 100.00 NA 95.00 100.00 NA 100.00 96.30 NA NA NA 100.00 NA NA 95.12 100.00 NA 100.00 100.00 88.89 100.00 NA 97.92 100.00 NA NA NA 100.00 NA 100.00 96.67 100.00 91.30 NA NA 96.55 100.00 97.62 95.83 K jcn_only_AA Nipped-B,I_chr2R_579746_579800,I_chr2R_580989_582555,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_579746_579800 chr2R_579752_579800 chr2R_579801_579900;chr2R_579646_579745 99.56 100.00 100.00 99.05 100.00 96.67 99.56 100.00 99.39 96.97 98.68 100.00 98.65 100.00 98.44 98.75 98.51 100.00 99.01 100.00 100.00 100.00 100.00 100.00 97.96 98.11 98.84 100.00 100.00 100.00 97.66 98.84 100.00 98.16 100.00 96.15 100.00 100.00 97.87 99.03 98.55 98.35 98.67 100.00 100.00 99.02 100.00 98.44 99.40 98.67 98.96 100.00 100.00 100.00 100.00 96.10 100.00 100.00 K intron_retention SmG,I_chrX_16534261_16534338,I_chrX_16534274_16534337,I_chrX_16534274_16534346 chrX - chrX_16534274_16534338 chrX_16534273_16534274;chrX_16534338_16534339 chrX_16534174_16534273;chrX_16534339_16534437 0.00 0.00 0.00 1.00 0.00 0.00 0.71 0.00 0.37 0.00 0.00 0.41 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.65 0.00 2.27 0.00 0.00 0.00 0.00 1.38 0.00 3.31 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.69 0.00 0.00 0.43 0.90 0.00 0.00 0.00 0.00 0.33 0.63 0.00 0.00 K cassette Jupiter,I_chr3R_7417030_7419354,I_chr3R_7418347_7445425,RI_chr3R_7442793_7445425 chr3R - chr3R_7418347_7419354 chr3R_7418347_7419043;chr3R_7419077_7419354 chr3R_7419044_7419076 chr3R_7418247_7418346;chr3R_7419355_7419454 0.20 0.00 0.00 1.26 0.00 0.26 0.00 0.24 0.33 0.00 0.52 4.04 0.00 0.33 0.28 0.57 0.00 0.39 0.32 0.74 0.00 0.25 0.00 0.00 0.00 0.34 0.21 0.00 0.26 0.00 0.24 0.15 0.22 0.44 0.00 0.20 0.00 0.00 0.00 0.10 0.29 0.14 0.42 0.00 0.31 0.16 0.23 0.16 0.31 0.18 0.20 0.00 0.00 0.25 0.27 0.22 0.00 0.26 K intron_retention CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4987241_4987906 chr2L_4987240_4987241;chr2L_4987906_4987907 chr2L_4987159_4987240;chr2L_4987907_4988048 34.29 28.57 25.00 37.93 24.24 26.47 42.19 39.47 35.05 28.00 28.00 32.14 40.00 42.42 30.23 36.07 28.57 48.39 34.88 33.71 22.58 58.49 30.00 31.25 38.46 28.26 41.07 54.17 49.09 36.17 35.59 34.29 27.66 34.94 27.66 34.38 23.33 22.64 26.47 32.39 40.43 32.38 36.67 30.91 24.14 36.51 31.25 30.91 31.91 54.05 29.31 35.48 40.00 36.00 31.82 41.94 40.74 36.17 K intron_retention betaInt-nu chr2L + chr2L_21053362_21053457 chr2L_21053361_21053362;chr2L_21053457_21053458 chr2L_21053285_21053361;chr2L_21053458_21053644 4.80 7.41 0.00 4.55 6.25 8.33 6.06 2.38 8.05 0.00 0.00 10.81 0.00 0.00 5.26 4.84 3.12 14.71 12.50 6.35 0.00 NA 8.33 0.00 4.00 10.53 17.65 NA 46.15 0.00 6.90 0.00 18.18 11.76 NA NA 6.90 0.00 0.00 0.00 6.25 4.17 7.41 3.23 NA 5.26 0.00 14.29 8.47 NA 2.38 4.76 0.00 NA 10.81 0.00 0.00 3.57 K intron_retention Rheb,RI_chr3R_1395455_1395563,CRMP chr3R + chr3R_1395505_1395563 chr3R_1395504_1395505;chr3R_1395563_1395564 chr3R_1395297_1395504;chr3R_1395564_1395663 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG11306 chr3L + chr3L_21619479_21620041 chr3L_21619479_21619531;chr3L_21619725_21620041 chr3L_21619532_21619724 chr3L_21619348_21619478;chr3L_21620042_21620500 100.00 99.02 100.00 99.48 100.00 100.00 100.00 99.52 99.56 100.00 100.00 99.56 99.10 100.00 100.00 100.00 100.00 100.00 99.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Zn72D,RF_chr3L_16100887_16102721,I_chr3L_16105199_16105253 chr3L - chr3L_16105199_16105299;chr3L_16105199_16105253;chr3L_16105199_16105318 chr3L_16105199_16105431 chr3L_16105099_16105198;chr3L_16105432_16105487 96.67 100.00 100.00 93.42 97.30 100.00 93.15 98.85 98.56 100.00 100.00 100.00 97.78 93.65 95.45 98.61 100.00 90.91 100.00 95.95 92.59 90.48 97.37 97.56 88.89 95.45 88.00 91.67 92.59 83.87 90.77 95.00 97.14 98.63 NA NA 92.31 100.00 95.24 88.46 100.00 100.00 97.37 100.00 95.65 94.44 NA 100.00 95.16 96.67 94.74 100.00 NA NA 91.30 NA 100.00 92.86 K alternative_donor nimB1 chr2L + chr2L_13964732_13964796 chr2L_13964739_13964796 chr2L_13964797_13964865;chr2L_13964670_13964731 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 95.45 93.75 94.12 95.83 100.00 98.46 91.67 90.00 92.86 93.75 100.00 93.33 100.00 NA NA 100.00 98.21 95.65 100.00 100.00 100.00 100.00 100.00 92.86 100.00 95.83 94.74 94.44 100.00 95.65 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 97.44 K intron_retention gpp,I_chr3R_2271795_2272181 chr3R + chr3R_2232814_2233271 chr3R_2232813_2232814;chr3R_2233271_2233272 chr3R_2232804_2232813;chr3R_2233272_2233496 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 NA 100.00 100.00 94.74 94.12 100.00 100.00 100.00 100.00 100.00 100.00 NA 94.12 100.00 93.75 100.00 91.67 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 96.43 93.33 100.00 NA 100.00 NA 95.24 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 K alternative_donor CG3940,I_chr3R_5942982_5943330 chr3R + chr3R_5938358_5943330 chr3R_5938536_5943330 chr3R_5943331_5943402;chr3R_5938323_5938357 88.89 NA NA NA NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 83.33 NA NA 100.00 NA NA NA NA NA 87.50 NA NA NA NA NA NA 88.89 87.50 N alternative_acceptor CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261460_263113;chr4_261460_261555 chr4_261460_263086 chr4_261360_261459;chr4_263114_263305 64.71 63.64 64.29 21.05 75.00 81.82 53.33 67.74 62.79 NA 80.00 60.87 61.54 75.00 70.00 57.50 66.67 72.73 68.75 74.07 71.43 60.00 57.14 71.43 33.33 42.86 50.00 NA 75.00 33.33 64.71 83.33 66.67 62.96 60.00 50.00 60.00 60.00 NA 75.00 33.33 62.96 80.00 80.00 60.00 83.33 66.67 50.00 60.00 85.71 66.67 75.00 50.00 66.67 56.25 NA 71.43 71.43 K intron_retention RpS9,E_chr3L_9503090_9504155,E_chr3L_9503259_9504163,snoRNA:Me28S-G3253,I_chr3L_9504402_9504516 chr3L - chr3L_9503752_9504155 chr3L_9503751_9503752;chr3L_9504155_9504156 chr3L_9503565_9503751;chr3L_9504156_9504255 0.04 0.00 0.04 0.00 0.00 0.00 0.06 0.08 0.02 0.06 0.07 0.05 0.06 0.15 0.02 0.02 0.03 0.05 0.06 0.01 0.00 0.04 0.05 0.02 0.00 0.00 0.07 0.44 0.15 0.05 0.05 0.05 0.05 0.02 0.00 0.00 0.03 0.08 0.03 0.03 0.05 0.04 0.09 0.00 0.04 0.08 0.03 0.00 0.05 0.02 0.04 0.05 0.01 0.00 0.04 0.02 0.07 0.07 K alternative_acceptor eIF-4E,RI_chr3L_9394049_9394139,RI_chr3L_9394054_9394756,I_chr3L_9394468_9395446,I_chr3L_9394819_9395198,I_chr3L_9394819_9395379 chr3L - chr3L_9394049_9394139 chr3L_9394054_9394139 chr3L_9394140_9394239;chr3L_9393954_9394048 100.00 100.00 100.00 99.01 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.82 100.00 100.00 99.29 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.80 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.86 99.46 100.00 100.00 100.00 100.00 98.97 100.00 99.37 100.00 100.00 98.18 100.00 100.00 100.00 100.00 99.20 100.00 K intron_retention tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563461_565293 chr3R_563460_563461;chr3R_565293_565294 chr3R_563195_563460;chr3R_565294_565301 77.78 78.57 71.43 91.11 70.83 70.37 54.17 81.58 67.82 82.35 76.47 85.45 86.36 89.29 84.00 84.78 80.00 78.57 67.57 77.27 66.67 76.92 77.42 67.65 76.47 77.42 75.86 73.33 68.00 73.68 75.68 66.67 90.91 79.49 81.82 77.78 86.11 80.00 65.38 83.87 84.62 76.27 77.78 89.47 100.00 77.78 64.00 89.47 77.78 76.47 91.43 83.33 73.68 87.50 88.89 85.71 67.57 80.00 N intron_retention Pde8,I_chr2R_19555184_19557424,CG42241,I_chr2R_19563512_19564565 chr2R + chr2R_19553559_19561808 chr2R_19553558_19553559;chr2R_19561808_19561809 chr2R_19553474_19553558;chr2R_19561809_19561865 100.00 100.00 100.00 54.55 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 50.00 100.00 100.00 100.00 NA 100.00 NA 23.08 100.00 100.00 100.00 100.00 100.00 100.00 36.36 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 K alternative_last_exon CG17598 chrX - chrX_21935505_21938689 chrX_21936673_21938689 chrX_21934692_21935504 chrX_21936107_21936672 chrX_21938690_21938827 4.88 2.86 6.67 15.38 4.76 3.85 9.68 11.43 9.52 4.55 0.00 4.35 5.88 7.41 5.71 13.79 9.52 3.45 11.54 11.59 4.35 3.92 5.88 5.56 2.94 4.00 6.98 2.56 4.44 2.44 13.16 3.12 2.33 7.14 6.25 5.56 1.72 4.55 4.00 3.12 3.23 5.08 9.52 4.26 1.85 6.67 4.88 8.33 8.93 2.50 3.45 6.67 2.78 5.26 8.82 4.35 4.08 6.82 K jcn_only_AA RpL5,I_chr2L_22428750_22428846 chr2L - chr2L_22429111_22429352 chr2L_22429298_22429352 chr2L_22429353_22429396 9.17 12.50 28.57 18.63 10.00 10.00 20.75 10.53 14.67 0.00 11.43 13.89 25.00 11.54 12.04 24.39 9.17 0.00 14.68 10.13 11.43 2.22 NA NA NA 4.90 NA 0.27 0.55 1.39 2.26 2.33 0.79 8.53 18.75 1.92 NA NA NA 0.66 0.99 8.86 15.69 0.42 3.01 1.97 NA 1.40 15.09 NA NA NA 5.43 NA 7.52 NA NA 15.34 K cassette AGO1,I_chr2R_9844856_9845327 chr2R - chr2R_9838423_9840553;chr2R_9838423_9842191 chr2R_9838423_9839118;chr2R_9839194_9840553,chr2R_9839194_9842191 chr2R_9839119_9839193 chr2R_9837637_9838422;chr2R_9842192_9842260 94.34 97.50 96.88 77.36 97.06 90.91 88.64 94.34 90.43 97.30 89.47 94.52 76.47 97.44 86.36 96.88 96.88 90.32 92.86 94.67 96.00 91.46 96.67 96.49 97.73 92.86 97.92 95.56 86.67 95.83 96.55 90.91 95.56 96.55 90.62 61.22 92.44 88.33 92.00 96.67 90.91 94.12 95.65 95.65 93.33 93.75 100.00 94.44 98.61 94.74 93.65 92.31 100.00 92.86 89.47 88.24 88.89 100.00 K intron_retention KdelR,CG5188 chr2L + chr2L_10427009_10427075 chr2L_10427008_10427009;chr2L_10427075_10427076 chr2L_10426867_10427008;chr2L_10427076_10428159 14.29 0.00 8.82 16.95 14.71 12.50 15.22 11.86 15.28 16.67 15.15 9.72 11.11 15.00 21.88 14.29 21.88 16.67 16.67 17.95 8.33 15.38 8.06 13.04 9.76 16.22 42.86 66.07 44.00 13.04 15.38 12.50 16.67 24.32 21.88 22.58 15.38 8.00 11.36 9.23 10.53 11.94 9.09 10.20 20.83 11.43 5.13 25.00 18.06 14.29 7.69 0.00 12.50 5.41 15.00 16.22 13.16 4.76 K jcn_only_AA CG31999,I_chr4_236187_238030,I_chr4_236686_238031,I_chr4_238453_238873,I_chr4_238809_238873,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_238453_238873;chr4_238809_238873 chr4_238121_238873 chr4_238874_238973;chr4_238032_238120 97.21 93.33 98.55 95.41 96.55 98.15 97.73 97.83 97.92 100.00 96.30 98.38 91.43 97.92 96.30 98.56 100.00 97.78 96.75 96.15 96.08 97.87 97.92 94.44 95.83 100.00 92.31 NA 93.75 97.92 98.26 94.74 96.15 97.69 97.06 100.00 94.74 96.00 100.00 95.95 100.00 97.28 100.00 93.33 100.00 100.00 97.14 100.00 98.17 94.74 88.57 96.97 100.00 98.18 97.12 93.10 96.70 97.06 K jcn_only_AD CG3558,RI_chr2L_2995071_2997790 chr2L + chr2L_2993464_2993544;chr2L_2993410_2993544;chr2L_2993378_2993544 chr2L_2993444_2993544 chr2L_2993545_2994408;chr2L_2993028_2993377 0.00 0.00 2.82 0.93 0.00 0.00 2.17 1.39 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 5.56 0.00 1.53 0.00 1.18 3.08 0.00 0.00 5.13 2.17 0.00 6.19 0.00 1.49 1.54 0.00 1.33 0.00 1.82 0.00 2.50 0.00 0.00 2.38 5.51 3.77 2.30 0.00 0.00 0.00 0.56 0.00 0.00 1.72 0.00 0.00 NA 1.25 0.00 0.00 0.62 K cassette bbc,REI_chr2R_9379401_9381986 chr2R - chr2R_9375638_9378939 chr2R_9375638_9378244;chr2R_9378377_9378939 chr2R_9378245_9378376 chr2R_9375479_9375637;chr2R_9378940_9379098 80.88 80.38 85.08 60.41 74.21 84.57 73.91 75.54 81.89 90.91 64.67 86.50 58.64 84.77 80.95 69.19 76.92 66.67 71.93 76.18 61.67 88.97 79.84 79.50 78.89 80.36 80.36 80.88 79.43 87.28 88.53 89.44 89.11 82.55 89.03 65.32 74.58 84.43 79.17 88.13 91.05 81.25 73.91 88.86 87.62 91.07 90.53 94.63 79.94 76.11 84.56 80.47 85.22 84.95 79.81 81.42 79.10 95.72 K alternative_donor Pk61C,CE_chr3L_129889_141769,I_chr3L_132531_133824,I_chr3L_133962_134014 chr3L + chr3L_132056_135457;chr3L_131934_135457;chr3L_131959_135457 chr3L_132531_135457 chr3L_135458_135842;chr3L_131849_131933 100.00 87.50 100.00 93.33 90.00 91.67 96.67 94.87 92.86 100.00 100.00 100.00 92.31 100.00 100.00 89.19 100.00 100.00 100.00 96.67 100.00 88.89 100.00 100.00 88.89 93.75 83.33 75.00 77.78 100.00 92.31 100.00 100.00 90.62 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 92.86 90.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG3651,I_chr2L_22124217_22124661,I_chr2L_22124698_22124781 chr2L + chr2L_22124217_22124661;chr2L_22124217_22124781 chr2L_22124217_22124786 chr2L_22124117_22124216;chr2L_22124787_22124881 2.60 1.79 1.96 3.60 3.65 4.00 5.36 1.43 1.75 4.42 2.54 3.76 3.97 3.55 2.44 2.15 3.85 2.13 3.80 2.78 2.73 2.00 4.21 0.89 4.65 2.53 1.72 1.69 3.64 4.48 2.27 1.00 2.33 3.86 4.03 2.54 2.60 1.92 3.08 4.04 2.39 3.36 4.04 2.76 1.33 1.97 2.91 1.57 2.47 2.71 5.26 0.69 2.41 0.63 2.04 3.24 0.59 2.95 K intron_retention Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4847655_4849003 chrX_4847654_4847655;chrX_4849003_4849004 chrX_4847526_4847654;chrX_4849004_4849551 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Imp,I_chrX_10699490_10700695,RI_chrX_10699665_10700501,RI_chrX_10699665_10700695 chrX - chrX_10699503_10700695 chrX_10699502_10699503;chrX_10700695_10700696 chrX_10699299_10699502;chrX_10700696_10700795 93.10 80.00 100.00 87.50 NA 90.00 100.00 93.75 89.19 NA 90.91 85.19 93.33 80.00 75.00 87.88 84.62 90.91 100.00 100.00 88.89 93.75 NA NA NA NA NA NA 100.00 100.00 93.33 NA 95.83 93.10 NA NA NA NA NA 90.91 NA 94.12 82.35 NA NA NA NA 100.00 85.19 NA NA NA NA NA 100.00 NA NA 100.00 K jcn_only_AD CG18596,I_chr3R_18203637_18203690,I_chr3R_18209085_18209133 chr3R + chr3R_18203633_18203690 chr3R_18203637_18203690 chr3R_18203691_18203790;chr3R_18203566_18203632 1.27 0.00 4.76 4.65 NA NA 0.00 5.26 0.00 NA NA 2.50 3.45 NA NA 2.78 3.57 NA 0.00 0.00 NA 2.00 0.00 3.33 3.33 3.33 4.76 1.27 0.00 0.00 9.38 NA NA 0.00 4.55 NA 4.55 NA NA 0.00 5.00 0.00 0.00 2.27 NA 0.00 NA NA 0.00 6.98 0.00 0.00 NA NA 0.00 NA 0.00 NA K alternative_donor CG16791 chr3R - chr3R_17149940_17160425 chr3R_17149940_17160248 chr3R_17149849_17149939;chr3R_17160426_17160490 94.44 94.12 92.86 96.55 91.67 86.67 94.12 90.62 93.94 92.31 90.00 96.67 90.91 100.00 94.12 85.19 100.00 100.00 95.00 97.56 100.00 81.82 94.44 94.44 90.00 82.35 95.00 100.00 100.00 100.00 90.91 93.33 94.44 96.55 91.67 92.86 100.00 100.00 94.44 95.65 91.67 96.77 93.33 92.86 92.86 94.44 92.31 100.00 96.97 92.31 100.00 90.91 100.00 100.00 100.00 100.00 90.91 96.30 K jcn_only_AA MSBP,I_chrX_15783766_15784027,RI_chrX_15783766_15784064,I_chrX_15783766_15785978 chrX - chrX_15783766_15783941 chrX_15783782_15783941 chrX_15783942_15783997;chrX_15783666_15783765 11.52 10.43 13.16 15.13 10.29 11.98 12.50 11.63 12.13 15.24 10.23 10.07 13.23 7.73 11.52 11.21 7.73 8.24 16.54 14.23 7.17 12.04 10.09 16.00 15.60 20.21 8.15 10.29 9.64 11.68 11.20 14.07 3.47 12.72 12.70 16.92 13.17 20.00 12.56 9.96 14.63 14.66 8.77 13.66 4.13 9.85 7.19 11.18 8.07 13.53 11.44 10.19 10.77 10.89 12.70 16.59 8.71 11.18 K intron_retention Psf3 chrX - chrX_10278460_10278520 chrX_10278459_10278460;chrX_10278520_10278521 chrX_10277414_10278459;chrX_10278521_10278915 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 2.17 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention bmm,I_chr3L_14772123_14772190 chr3L - chr3L_14770086_14770438 chr3L_14770085_14770086;chr3L_14770438_14770439 chr3L_14769603_14770085;chr3L_14770439_14770707 0.00 0.00 4.26 4.71 0.00 0.00 1.64 4.95 3.97 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 1.59 1.25 0.00 3.45 0.00 0.00 0.00 0.00 1.61 4.00 0.00 0.00 0.00 3.85 6.25 0.00 2.56 0.00 1.85 0.00 0.00 1.68 3.39 3.08 0.00 1.89 0.00 3.57 0.00 6.00 1.94 0.00 0.00 0.00 0.00 0.00 1.54 1.72 0.00 1.23 K alternative_last_exon CG32177,Krn chr3L - chr3L_17642347_17647091 chr3L_17643727_17647091 chr3L_17640539_17642346 chr3L_17642664_17643726 chr3L_17647092_17647376 30.49 30.49 23.29 23.53 28.85 25.00 24.24 30.84 28.38 26.09 5.26 32.03 32.73 27.69 31.51 23.71 26.79 25.42 29.17 26.67 10.17 45.35 35.35 32.35 30.91 25.76 30.95 23.61 52.11 30.16 28.17 32.79 28.57 28.07 36.92 32.84 35.71 30.67 36.27 28.04 32.81 28.78 26.79 37.21 40.91 33.01 30.68 30.77 29.37 28.28 36.47 31.67 35.29 41.79 29.27 34.62 34.12 23.40 K intron_retention Lag1,I_chrX_6152540_6152929,RI_chrX_6153758_6161036,I_chrX_6160907_6161036 chrX - chrX_6152540_6152682 chrX_6152539_6152540;chrX_6152682_6152683 chrX_6152440_6152539;chrX_6152683_6152827 1.03 0.79 1.03 1.07 1.05 0.34 0.75 1.28 0.86 0.00 0.00 1.65 0.94 1.52 1.22 1.68 1.56 0.00 1.17 0.65 0.89 1.04 0.73 0.65 1.32 2.51 1.65 1.72 1.41 0.50 0.27 0.00 0.89 1.06 1.54 0.66 1.18 0.70 1.00 1.56 1.33 1.12 1.54 0.59 0.60 0.98 1.23 0.00 1.23 1.05 1.11 0.27 0.76 1.33 0.96 1.08 0.99 0.00 K alternative_donor CG32016,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_978750_978816;chr4_978750_978914;chr4_978750_978910 chr4_978750_978939 chr4_978632_978749;chr4_978940_978943 12.50 NA NA NA NA NA 14.29 9.09 20.00 NA NA 8.33 NA 20.00 NA 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA 57.14 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG4901,RI_chr2L_10212268_10212326,RI_chr2L_10212403_10212451 chr2L + chr2L_10212403_10212467 chr2L_10212403_10212451 chr2L_10212327_10212402;chr2L_10212468_10212551 0.88 4.35 0.00 0.00 0.00 2.33 1.43 1.23 0.88 NA 0.00 5.80 2.50 0.00 0.00 0.00 2.56 0.00 1.67 1.55 0.00 1.56 0.00 0.00 0.00 0.00 0.00 4.35 1.30 1.49 5.36 0.00 1.68 0.00 2.13 4.88 0.00 4.44 2.63 0.88 0.00 5.88 0.00 2.27 0.00 3.23 0.00 0.00 0.00 0.00 3.51 NA 2.22 0.00 0.00 0.00 1.47 1.14 K intron_retention CG14414,I_chrX_14474880_14474927 chrX + chrX_14474880_14474951 chrX_14474879_14474880;chrX_14474951_14474952 chrX_14474780_14474879;chrX_14474952_14475027 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 4.48 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG15237 chr2R - chr2R_2697017_2697074 chr2R_2697016_2697017;chr2R_2697074_2697075 chr2R_2696929_2697016;chr2R_2697075_2697330 0.00 0.00 0.00 1.82 0.00 0.00 0.00 2.94 0.00 NA 0.00 1.69 0.00 0.00 5.56 0.00 0.00 0.00 0.00 2.60 0.00 NA 4.08 0.00 0.00 0.00 0.00 8.00 10.00 0.00 9.09 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 5.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention noncoding_18450,noncoding_18451,CG6982,CG17618,CG17618_CG6982 chr3R + chr3R_18552824_18554564 chr3R_18552823_18552824;chr3R_18554564_18554565 chr3R_18552763_18552823;chr3R_18554565_18554629 6.06 2.38 6.90 6.38 NA 7.41 8.89 4.76 7.41 NA 14.29 4.35 4.17 0.00 6.25 5.08 0.00 8.33 2.56 6.06 18.18 9.76 6.82 5.56 NA 8.70 0.00 0.00 21.05 5.88 5.26 NA 8.33 7.27 3.23 5.26 15.38 NA NA 6.12 0.00 7.32 5.56 0.00 3.85 0.00 6.25 11.76 7.46 13.33 0.00 11.11 0.00 0.00 10.87 0.00 8.33 0.00 K intron_retention CG17352,I_chr3L_8351006_8351949,I_chr3L_8351036_8351655 chr3L - chr3L_8346513_8346578 chr3L_8346512_8346513;chr3L_8346578_8346579 chr3L_8345596_8346512;chr3L_8346579_8347283 72.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 72.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_716066_716322 chr4_716065_716066;chr4_716322_716323 chr4_716053_716065;chr4_716323_716675 72.73 71.43 45.45 75.86 NA NA 85.71 76.00 73.53 NA NA 70.00 NA 64.29 NA 80.00 63.64 NA NA 73.33 NA NA 80.00 NA NA NA 69.23 NA NA NA 71.43 NA NA 80.95 NA NA NA NA NA 87.50 NA 78.26 69.23 87.50 NA NA NA NA 68.00 NA 72.73 70.00 NA NA 69.23 NA NA NA K alternative_donor CaMKI,I_chr4_473338_473410,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_473338_473428 chr4_473371_473428 chr4_473429_473444;chr4_473272_473337 100.00 100.00 100.00 96.67 100.00 100.00 96.77 97.30 97.78 100.00 92.86 96.43 100.00 100.00 95.45 100.00 94.74 100.00 100.00 100.00 100.00 92.86 93.75 100.00 90.00 92.86 100.00 NA 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 K alternative_donor Kr-h2 chr2L + chr2L_6071181_6072413 chr2L_6071188_6072413 chr2L_6072414_6072676;chr2L_6071112_6071180 99.15 99.18 100.00 99.20 100.00 98.80 99.21 99.12 98.95 98.33 100.00 99.44 97.80 100.00 98.97 99.29 100.00 100.00 98.90 100.00 98.61 98.31 98.55 99.15 100.00 97.37 99.25 100.00 100.00 98.97 99.19 98.65 97.96 99.11 96.97 99.14 100.00 100.00 99.32 99.16 100.00 99.34 98.77 98.45 97.56 99.32 99.27 100.00 100.00 98.78 99.03 98.31 100.00 97.96 99.04 99.12 98.23 96.97 K intron_retention Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11823830_11823891 chr2R_11823829_11823830;chr2R_11823891_11823892 chr2R_11823822_11823829;chr2R_11823892_11824085 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.10 100.00 100.00 99.28 98.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette CG17698 chr3L + chr3L_23741161_23741523 chr3L_23741161_23741239;chr3L_23741474_23741523 chr3L_23741240_23741473 chr3L_23741051_23741160;chr3L_23741524_23741816 100.00 100.00 100.00 98.25 100.00 100.00 98.28 97.56 97.70 100.00 100.00 98.41 100.00 100.00 97.22 98.51 100.00 100.00 100.00 98.57 100.00 100.00 96.30 100.00 100.00 80.00 96.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 93.75 100.00 100.00 100.00 100.00 97.37 100.00 92.31 100.00 100.00 100.00 98.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Rgl chr3L - chr3L_13907626_13912290 chr3L_13907625_13907626;chr3L_13912290_13912291 chr3L_13907229_13907625;chr3L_13912291_13912342 17.86 14.29 22.22 18.18 NA 38.46 26.09 17.50 23.26 NA 18.75 23.08 23.08 31.25 28.57 25.00 30.00 NA 26.09 20.00 NA 11.54 17.86 15.00 14.29 17.39 12.00 NA 14.29 11.76 37.50 NA 7.14 25.71 15.79 12.50 10.00 NA 26.67 17.86 10.53 34.62 25.00 6.90 NA 6.67 NA 15.15 32.35 15.79 15.38 33.33 NA NA 17.24 NA NA NA K jcn_only_AD CG16936,RI_chr2R_20655101_20655166,I_chr2R_20660319_20660496 chr2R - chr2R_20655101_20655620;chr2R_20655101_20655476;chr2R_20655101_20655166 chr2R_20655101_20655161 chr2R_20655001_20655100;chr2R_20655621_20655665 2.86 3.03 2.74 3.57 3.17 1.41 2.86 0.00 2.09 5.19 5.88 1.27 1.45 4.48 2.82 5.19 2.47 74.07 1.47 3.90 2.70 4.35 1.01 4.23 2.38 0.00 5.80 0.00 2.86 2.44 9.09 7.58 3.26 1.52 0.00 NA 3.91 4.30 2.80 3.18 7.14 0.53 2.33 2.08 5.31 7.25 6.25 9.59 1.97 0.89 2.46 2.33 1.04 3.95 7.32 2.86 1.17 7.53 K alternative_donor CG4699 chr3R + chr3R_11624133_11624445;chr3R_11624190_11624445;chr3R_11624127_11624445 chr3R_11624200_11624445 chr3R_11624446_11624758;chr3R_11623809_11624126 46.88 42.50 42.50 31.25 31.71 45.45 69.09 74.14 60.00 40.38 55.56 40.85 52.78 56.76 64.15 44.74 54.05 60.71 46.67 60.92 50.00 50.41 50.00 46.77 44.44 48.78 43.64 41.07 45.45 67.06 38.64 56.90 43.00 60.66 54.24 31.58 36.23 40.43 49.25 50.79 42.86 52.08 37.50 62.26 36.17 42.86 43.24 48.72 37.23 40.00 55.10 59.38 53.49 46.88 48.08 56.76 38.24 40.50 K jcn_only_AD CG7028,I_chr3L_207277_208117 chr3L - chr3L_210400_210475 chr3L_210400_210453 chr3L_209784_210399;chr3L_210476_210738 0.00 NA NA NA NA NA NA NA 8.70 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA 4.76 NA NA NA 9.68 NA 0.00 NA NA NA NA 0.00 0.00 NA 2.94 0.00 NA 0.00 NA NA 0.00 NA NA 2.86 NA NA 4.35 NA NA NA NA NA NA NA K alternative_donor wge chr3R - chr3R_18543064_18545592 chr3R_18543064_18543161 chr3R_18542929_18543063;chr3R_18545593_18545739 3.75 2.44 3.12 2.33 3.85 3.03 5.56 2.27 3.12 5.26 6.45 2.60 4.76 3.33 2.94 9.09 4.76 5.56 3.70 3.75 6.67 7.55 1.39 4.00 2.70 2.56 4.44 21.74 10.81 2.38 2.20 5.00 2.78 3.57 2.50 2.08 4.26 3.70 1.49 2.78 4.76 3.17 5.88 6.45 3.57 6.06 4.55 2.00 4.48 9.09 3.45 3.12 2.63 5.00 4.65 9.52 13.04 5.26 K jcn_only_AA CG34213,RI_chr2R_19854960_19855038 chr2R - chr2R_19854960_19855038 chr2R_19854986_19855038 chr2R_19855039_19855104;chr2R_19854905_19854959 95.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 95.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG1407,RI_chr2R_5918919_5919093,I_chr2R_5918925_5919213,RI_chr2R_5918952_5919084,RI_chr2R_5918952_5919093 chr2R - chr2R_5918925_5919093 chr2R_5918952_5919093 chr2R_5919094_5919184;chr2R_5918852_5918924 67.35 58.70 60.61 48.28 75.61 73.53 63.93 62.04 67.86 70.97 74.47 70.83 82.05 59.52 63.64 65.82 73.33 55.74 68.25 63.96 67.35 80.00 64.71 58.18 69.57 78.57 63.33 81.25 77.27 67.86 62.12 55.00 71.43 65.96 74.07 92.31 70.49 58.70 55.88 71.79 63.16 68.10 69.23 60.71 76.00 51.02 57.14 82.61 65.42 59.62 57.14 67.44 60.00 58.82 72.31 60.47 72.22 79.41 K intron_retention betaCop chrX - chrX_18277292_18277495 chrX_18277291_18277292;chrX_18277495_18277496 chrX_18276636_18277291;chrX_18277496_18279305 0.00 0.00 0.55 0.57 0.00 0.00 0.00 0.99 0.54 0.00 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 1.70 0.00 0.00 0.00 0.70 0.74 0.92 0.00 0.00 0.50 0.00 0.00 0.45 0.00 1.41 0.00 0.00 1.06 0.43 0.74 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Eph,I_chr4_631523_634240,I_chr4_631555_631910,I_chr4_631643_631910,I_chr4_632065_634240,I_chr4_639690_640473,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_631523_634240 chr4_631523_631910;chr4_632065_634240 chr4_631911_632064 chr4_631455_631522;chr4_634241_634340 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 97.14 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 NA 100.00 93.75 100.00 100.00 100.00 N intron_retention zetaCOP chr3L - chr3L_16665251_16665553 chr3L_16665250_16665251;chr3L_16665553_16665554 chr3L_16665209_16665250;chr3L_16665554_16665644 100.00 100.00 100.00 87.65 NA NA 100.00 100.00 100.00 NA NA 100.00 79.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD MED10,I_chr3L_16225377_16225479 chr3L + chr3L_16225377_16225479 chr3L_16225424_16225479 chr3L_16225480_16225579;chr3L_16225277_16225376 100.00 100.00 98.68 100.00 100.00 100.00 100.00 100.00 98.65 100.00 100.00 99.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.35 98.53 100.00 98.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.01 99.33 100.00 100.00 96.88 99.07 98.61 98.53 100.00 100.00 100.00 100.00 98.46 100.00 100.00 100.00 99.22 98.97 K intron_retention Noa36 chr3R - chr3R_24424360_24424451 chr3R_24424359_24424360;chr3R_24424451_24424452 chr3R_24423756_24424359;chr3R_24424452_24425097 0.00 0.00 0.00 1.68 0.00 0.00 1.79 0.88 0.97 0.00 0.00 2.26 0.00 2.67 0.00 2.02 0.00 2.08 2.94 0.38 0.00 0.00 0.00 0.00 2.90 0.00 1.82 0.95 0.00 0.00 0.00 1.64 0.89 2.42 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.57 0.00 0.00 0.00 0.00 1.19 1.71 0.00 0.74 0.00 0.00 0.00 0.00 1.68 1.10 0.00 1.15 K cassette CG12734,I_chr3L_3183812_3183932,I_chr3L_3184645_3185360 chr3L + chr3L_3183800_3184251;chr3L_3183800_3184248 chr3L_3183800_3183932;chr3L_3183998_3184251,chr3L_3183998_3184248 chr3L_3183933_3183997 chr3L_3183712_3183799;chr3L_3184252_3184644 100.00 94.74 100.00 100.00 92.31 100.00 93.33 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 95.45 90.91 100.00 95.65 96.15 92.31 100.00 100.00 100.00 76.47 100.00 100.00 92.31 93.33 100.00 100.00 77.78 97.37 94.74 100.00 95.45 90.91 95.83 100.00 100.00 92.86 100.00 100.00 100.00 100.00 95.24 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG15093 chr2R - chr2R_14664332_14664398 chr2R_14664344_14664398 chr2R_14664399_14664462;chr2R_14664047_14664331 15.52 17.86 14.71 20.22 19.57 16.22 17.65 20.24 9.02 7.69 14.29 14.56 11.54 9.30 16.07 16.67 22.00 19.23 22.58 22.12 20.51 15.00 12.24 20.20 4.88 15.79 16.36 0.00 13.21 13.89 14.29 11.11 11.32 16.36 28.57 16.67 4.39 8.20 18.56 12.14 NA 14.14 24.24 16.23 14.81 21.33 20.00 4.35 17.24 8.33 15.25 12.77 12.24 16.98 20.41 11.11 12.28 17.78 K alternative_donor CG4877 chr3L + chr3L_16379595_16379731 chr3L_16379671_16379731 chr3L_16379732_16380052;chr3L_16379486_16379594 85.71 100.00 NA 72.73 NA NA 90.00 66.67 90.00 NA NA 75.00 87.50 83.33 75.00 76.92 NA 83.33 88.89 66.67 NA NA 76.47 88.89 62.50 100.00 NA NA NA 85.71 88.89 NA NA 72.73 NA 55.56 NA NA NA 100.00 NA 91.67 85.71 91.67 NA NA NA NA 75.00 NA 90.00 70.00 NA NA 87.50 NA NA NA K intron_retention CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8186256_8186313 chr2L_8186255_8186256;chr2L_8186313_8186314 chr2L_8186117_8186255;chr2L_8186314_8186675 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 1.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention vkg,I_chr2L_5027222_5027297,I_chr2L_5027222_5028118 chr2L - chr2L_5027204_5027351 chr2L_5027203_5027204;chr2L_5027351_5027352 chr2L_5027122_5027203;chr2L_5027352_5027389 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 84.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K intron_retention CG8632,CG8646 chr2R + chr2R_8542602_8542653 chr2R_8542601_8542602;chr2R_8542653_8542654 chr2R_8542273_8542601;chr2R_8542654_8542728 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 3.92 0.00 5.26 0.00 6.67 9.09 0.00 0.00 0.00 16.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 4.26 3.85 2.13 0.00 0.00 NA 10.00 0.00 0.00 0.00 4.17 K jcn_only_AA CG6904,I_chr3R_10970962_10971422,I_chr3R_10970962_10972151,I_chr3R_10970962_10972185,I_chr3R_10970962_10972512,I_chr3R_10970962_10972522 chr3R - chr3R_10970962_10973196 chr3R_10971295_10973196 chr3R_10973197_10973329 2.50 0.00 3.12 5.31 1.15 0.00 7.32 0.77 0.00 4.00 4.17 5.88 0.00 0.00 0.95 7.50 0.00 46.77 3.53 2.38 1.59 6.06 3.03 4.17 NA 2.00 10.00 0.00 2.63 3.85 2.50 3.45 1.79 3.94 0.00 17.86 0.00 NA 0.00 1.33 2.78 3.03 1.56 0.00 0.00 5.88 NA 2.50 2.27 5.88 3.23 NA 2.50 NA 1.14 NA 0.00 1.28 K intron_retention CG4644 chr2L - chr2L_1107758_1107811 chr2L_1107757_1107758;chr2L_1107811_1107812 chr2L_1107373_1107757;chr2L_1107812_1107937 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Iap2,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11821325_11821703 chr2R_11821324_11821325;chr2R_11821703_11821704 chr2R_11821304_11821324;chr2R_11821704_11822085 4.76 1.96 3.85 13.33 4.29 4.76 4.11 6.12 4.79 8.33 3.17 4.32 5.68 2.67 5.21 4.67 2.70 2.53 6.35 7.07 3.03 3.88 5.59 4.48 6.49 5.06 10.71 7.61 6.59 6.02 11.11 6.78 4.08 3.31 5.88 6.93 5.03 1.71 4.20 2.56 4.69 5.23 5.56 2.88 9.52 3.76 2.83 10.94 5.80 2.15 5.03 3.49 7.04 4.46 3.67 3.91 3.74 7.02 K intron_retention CG30109,CG30108,I_chr2R_13557316_13557647 chr2R + chr2R_13557138_13557647 chr2R_13557137_13557138;chr2R_13557647_13557648 chr2R_13556976_13557137;chr2R_13557648_13557747 87.50 NA 93.33 96.00 80.00 90.91 88.24 71.43 87.50 90.00 92.31 86.21 92.31 91.67 93.75 96.00 100.00 76.47 69.23 90.00 93.75 100.00 76.19 73.33 81.82 94.12 89.47 100.00 90.91 75.00 51.43 93.33 85.71 80.00 90.91 76.47 82.35 88.89 93.33 74.07 63.64 83.33 85.71 70.00 88.24 68.18 90.91 62.50 93.55 76.19 88.24 80.00 NA 90.91 75.00 82.35 83.33 54.84 K mutually_exclusive rl,I_chr2RHet_199154_207044,RI_chr2RHet_203476_203577,RI_chr2RHet_203592_207044,R_chr2RHet_207162_232568,I_chr2RHet_232696_247338,RI_chr2RHet_240197_247338 chr2RHet + chr2RHet_203476_232560,chr2RHet_232696_239911 chr2RHet_203476_207044,chr2RHet_207156_239911 chr2RHet_232561_232695 chr2RHet_207045_207155 chr2RHet_203436_203475;chr2RHet_239912_239917 31.66 NA NA NA NA NA 33.33 NA NA NA NA 37.50 0.00 NA NA 30.00 50.00 NA NA NA NA NA NA NA 33.33 40.00 20.00 NA 40.00 NA NA NA NA 40.00 NA 0.00 NA NA NA 0.00 NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA K intron_retention l(1)G0196,I_chrX_21900456_21904601 chrX + chrX_21907213_21907440 chrX_21907212_21907213;chrX_21907440_21907441 chrX_21906993_21907212;chrX_21907441_21907938 0.00 0.00 0.00 NA NA NA 0.00 4.35 0.00 NA 0.00 4.35 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 11.11 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 3.12 0.00 0.00 NA 3.85 0.00 0.00 0.00 0.00 3.23 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD RpL23A,E_chr3L_1667550_1667808,I_chr3L_1667736_1667806 chr3L - chr3L_1667736_1667808 chr3L_1667736_1667806 chr3L_1667636_1667735;chr3L_1667809_1667906 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.02 0.01 0.00 0.02 0.00 0.00 0.02 0.02 0.00 0.01 0.00 0.01 0.01 0.01 0.00 0.01 0.00 0.02 0.01 0.00 0.02 0.02 0.00 0.01 0.02 0.00 0.01 0.00 0.01 0.00 0.01 K alternative_donor fs(1)h,I_chrX_7938425_7938871,I_chrX_7938425_7938878,I_chrX_7938449_7944184,I_chrX_7950171_7952371,I_chrX_7954192_7955240 chrX - chrX_7938425_7938878;chrX_7938425_7938871 chrX_7938425_7944184 chrX_7938366_7938424;chrX_7944185_7944284 62.81 66.13 56.60 52.27 62.50 59.09 45.78 45.19 52.52 87.23 61.11 61.02 44.90 41.51 52.63 40.21 47.83 50.00 41.67 58.41 59.46 79.69 76.47 78.82 69.23 53.49 69.12 78.26 73.53 69.74 55.56 61.11 76.85 46.15 70.83 74.12 80.00 80.70 82.67 64.86 69.35 62.81 43.48 66.67 74.14 60.00 73.44 69.17 55.15 72.13 73.39 67.35 75.47 62.86 47.06 67.35 59.46 61.05 K jcn_only_AA CG6051 chr3R - chr3R_22952341_22952415 chr3R_22952344_22952415 chr3R_22952416_22953488;chr3R_22951169_22952340 100.00 100.00 100.00 100.00 95.24 NA 100.00 100.00 100.00 100.00 96.00 100.00 NA NA 100.00 NA 100.00 NA NA 96.83 100.00 100.00 100.00 98.70 98.21 100.00 97.01 100.00 100.00 100.00 NA 97.22 100.00 100.00 100.00 100.00 98.54 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 96.36 100.00 92.31 100.00 97.65 100.00 96.55 100.00 100.00 96.49 100.00 97.56 N jcn_only_AA sgg,I_chrX_2529065_2563945,I_chrX_2536127_2563666,I_chrX_2555127_2563666,I_chrX_2561695_2562135,I_chrX_2563342_2563666,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2555127_2563666;chrX_2555127_2555372 chrX_2555127_2563945 chrX_2555119_2555126 98.08 100.00 100.00 100.00 NA 97.06 100.00 91.94 97.01 NA 100.00 100.00 NA 96.55 96.77 100.00 97.22 92.86 97.67 100.00 NA 98.15 96.72 100.00 NA 97.44 100.00 NA 100.00 97.30 100.00 100.00 98.00 94.92 95.45 100.00 95.45 100.00 100.00 100.00 100.00 98.48 96.55 96.72 96.43 100.00 93.94 100.00 82.89 93.75 94.59 100.00 NA 100.00 97.67 96.67 95.45 100.00 K jcn_only_AD CG7530,I_chr3R_10556352_10557136,eff chr3R - chr3R_10556352_10557130;chr3R_10556352_10557148;chr3R_10556352_10557126;chr3R_10556352_10557198 chr3R_10556352_10557105 chr3R_10556252_10556351;chr3R_10557199_10557231 4.00 1.74 10.28 4.88 0.98 2.78 4.88 2.38 3.08 3.70 1.32 5.44 0.00 6.98 3.88 5.00 0.00 3.51 5.10 6.34 2.53 NA 3.85 7.07 2.33 5.95 6.06 9.52 9.62 4.55 3.66 11.32 0.00 2.58 10.94 5.26 0.00 0.00 3.39 4.64 1.52 2.73 2.27 3.79 3.96 6.76 5.00 6.02 5.13 2.99 3.51 5.88 4.62 9.68 2.65 4.40 4.14 4.03 K alternative_donor tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5960101;chr3R_5959310_5960041;chr3R_5959310_5959789;chr3R_5959310_5960049;chr3R_5959310_5960182;chr3R_5959310_5960026;chr3R_5959310_5960158;chr3R_5959310_5959679 chr3R_5959310_5960163 chr3R_5958937_5959309;chr3R_5960183_5960224 0.00 0.00 0.00 4.00 0.00 0.00 4.35 4.55 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG3702,I_chr2L_4226795_4226846 chr2L - chr2L_4226768_4226846 chr2L_4226795_4226846 chr2L_4226847_4226946;chr2L_4226695_4226767 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 1.19 0.54 0.00 1.32 0.00 0.00 0.00 1.59 0.00 0.48 0.00 0.51 0.51 0.75 0.88 0.00 0.00 2.10 0.00 0.00 1.01 0.00 0.39 0.93 0.79 0.62 0.00 1.06 0.79 0.44 0.65 0.65 0.00 0.79 0.00 0.52 0.00 0.43 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.38 K intron_retention casp,EI_chr2R_11914764_11914841 chr2R - chr2R_11914052_11914115 chr2R_11914051_11914052;chr2R_11914115_11914116 chr2R_11913844_11914051;chr2R_11914116_11914317 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 1.47 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 1.40 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 K jcn_only_AD Pvr,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8230332_8239691 chr2L_8230332_8239074 chr2L_8230232_8230331;chr2L_8239692_8239845 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.50 0.40 0.37 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.41 0.00 0.54 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.89 0.00 0.31 0.00 0.80 0.00 K alternative_acceptor RanBPM chr2R + chr2R_6322096_6322156;chr2R_6322096_6322150 chr2R_6322096_6322141 chr2R_6321932_6322095;chr2R_6322157_6322290 0.00 1.69 0.00 1.32 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 2.22 2.86 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 1.08 0.00 1.61 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32521,I_chrX_21077612_21082713,I_chrX_21080906_21082713,CREF_chrX_21082827_21152068,EF_chrX_21094675_21152068 chrX - chrX_21082302_21082713 chrX_21082301_21082302;chrX_21082713_21082714 chrX_21082107_21082301;chrX_21082714_21082813 0.79 0.39 1.52 1.06 0.00 2.73 1.71 0.00 0.85 0.64 1.12 1.19 0.00 2.42 2.38 1.45 1.48 1.25 0.93 0.49 2.27 0.90 0.27 0.15 0.48 0.00 0.42 0.59 0.67 0.79 3.19 0.39 0.86 1.72 0.98 0.00 0.50 0.34 0.26 1.04 0.50 1.00 1.52 0.41 1.25 1.23 0.39 3.75 1.46 0.26 0.36 0.00 0.37 0.25 1.24 0.00 0.23 1.00 K jcn_only_AA I_chr3L_207277_208117,thoc7,pyx chr3L - chr3L_212557_212617 chr3L_212560_212617 chr3L_212618_212687;chr3L_212445_212556 94.72 96.15 96.43 92.50 90.91 NA 97.62 97.14 93.65 90.00 100.00 100.00 87.50 100.00 85.71 94.44 NA 100.00 NA 91.76 96.55 96.30 100.00 NA NA NA 95.00 92.00 NA NA NA 97.30 NA 88.57 NA NA 93.65 100.00 92.59 92.00 96.55 96.55 NA 95.00 95.65 90.62 NA 89.29 91.18 96.67 NA NA 91.67 NA 100.00 88.00 90.91 89.19 K cassette eff,I_chr3R_10559606_10563141,REI_chr3R_10560141_10566101 chr3R - chr3R_10559606_10563141 chr3R_10559606_10560108;chr3R_10560141_10563141 chr3R_10560109_10560140 chr3R_10559506_10559605;chr3R_10563142_10563205 100.00 99.22 100.00 100.00 100.00 100.00 99.12 100.00 99.67 100.00 100.00 99.61 100.00 99.34 99.37 100.00 99.33 100.00 100.00 100.00 100.00 100.00 99.17 100.00 100.00 98.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.61 99.10 98.99 100.00 100.00 100.00 100.00 99.19 99.64 99.29 100.00 98.99 99.33 98.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1666219_1670219;chr2R_1666219_1669803;chr2R_1666219_1670325;chr2R_1666219_1670281 chr2R_1666219_1670203 chr2R_1666119_1666218;chr2R_1670326_1670328 15.22 8.33 19.44 9.76 4.17 28.00 14.58 18.75 10.26 23.53 8.33 12.70 10.00 9.38 20.51 19.67 17.95 12.50 17.95 23.16 21.62 25.00 10.00 21.05 15.79 21.43 13.64 12.50 12.00 16.67 16.33 23.53 4.35 15.00 24.00 8.33 7.69 11.11 15.79 18.37 19.05 16.46 20.59 6.25 11.76 16.67 10.00 15.00 15.22 9.09 17.39 14.29 25.00 10.00 15.69 27.27 6.25 14.29 K intron_retention CG4699 chr3R + chr3R_11621302_11621367 chr3R_11621301_11621302;chr3R_11621367_11621368 chr3R_11620557_11621301;chr3R_11621368_11622613 0.00 2.70 0.00 1.72 0.00 2.56 3.45 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 2.27 2.70 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32037 chr3L - chr3L_9483608_9483665 chr3L_9483607_9483608;chr3L_9483665_9483666 chr3L_9483423_9483607;chr3L_9483666_9483789 20.00 14.29 NA NA NA NA NA NA NA NA NA 38.10 NA NA NA NA NA NA NA 9.52 NA 12.50 22.73 12.00 20.00 NA 0.00 NA NA NA 36.84 NA 20.00 36.84 NA 7.14 30.00 NA 17.39 36.84 NA 22.22 NA 7.14 0.00 21.05 9.52 NA 26.67 6.67 17.65 NA NA NA 40.00 46.15 NA NA K cassette Ptp10D,CEF_chrX_11516219_11517862,I_chrX_11516225_11516345 chrX + chrX_11567495_11569363 chrX_11567495_11567763;chrX_11569060_11569363 chrX_11567764_11569059 chrX_11567366_11567494;chrX_11569364_11569672 93.33 88.33 95.83 97.01 90.24 97.78 91.84 79.17 93.81 86.67 90.62 88.10 70.97 90.91 94.12 96.08 97.50 100.00 91.67 93.97 96.88 95.29 89.41 91.67 86.36 97.22 96.67 100.00 97.96 93.44 92.98 83.33 96.12 93.33 87.72 100.00 96.26 93.33 94.17 92.47 94.59 90.48 94.29 94.74 96.77 86.57 98.11 89.81 92.55 88.00 90.54 97.50 95.45 92.50 89.83 92.31 97.73 92.31 K intron_retention CG4266,I_chr2R_17052549_17053657 chr2R - chr2R_17053380_17054234 chr2R_17053379_17053380;chr2R_17054234_17054235 chr2R_17053064_17053379;chr2R_17054235_17054339 0.00 0.00 1.61 0.00 0.00 1.61 0.00 2.44 0.73 0.00 0.00 1.47 5.26 0.00 0.00 3.90 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 2.04 0.00 0.86 0.72 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.74 0.00 0.00 0.00 N cassette Dscam,F_chr2R_3219886_3228832,F_chr2R_3226043_3235353,F_chr2R_3227948_3235353,F_chr2R_3228738_3235353,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3219886_3235353;chr2R_3219886_3232989 chr2R_3219886_3232565;chr2R_3232857_3232989,chr2R_3232857_3235353 chr2R_3232566_3232856 chr2R_3219786_3219885;chr2R_3235354_3235453 30.00 14.29 23.53 17.65 36.36 44.44 30.00 24.14 42.31 36.36 NA 67.86 13.04 41.67 38.46 57.14 45.45 60.00 50.00 53.12 33.33 7.32 33.33 44.44 40.00 25.00 33.33 42.86 10.00 20.00 28.57 NA 5.71 36.36 NA 22.22 17.65 15.38 33.33 17.86 NA 32.00 80.00 23.08 NA 18.18 NA 30.00 28.12 NA 12.50 14.29 NA NA 24.00 5.56 NA 7.69 N jcn_only_AD CG15908_CG9410,CG15908,CG9410 chr2R + chr2R_2556730_2556834 chr2R_2556738_2556834 chr2R_2556835_2556939;chr2R_2556598_2556729 46.31 30.00 NA 35.71 60.00 NA 33.33 56.25 53.33 NA 45.00 43.64 NA NA 0.00 42.86 50.00 44.44 NA 40.00 NA 50.00 65.62 47.06 NA NA NA 0.00 53.57 57.14 72.73 50.00 58.06 51.22 55.17 39.13 46.67 NA 46.88 43.14 44.00 54.55 NA 39.29 56.25 57.50 52.17 39.47 38.71 42.86 45.95 44.83 59.26 NA 30.77 47.50 40.00 33.33 K cassette Psa,I_chr3L_1518053_1518213 chr3L + chr3L_1502982_1519946 chr3L_1502982_1518176;chr3L_1518797_1519946 chr3L_1518177_1518796 chr3L_1502976_1502981;chr3L_1519947_1520763 100.00 100.00 99.39 100.00 99.20 100.00 99.45 99.55 99.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.67 100.00 99.60 99.55 100.00 100.00 100.00 99.47 98.98 100.00 100.00 100.00 99.19 99.67 100.00 100.00 99.35 100.00 100.00 99.52 99.65 100.00 99.67 99.14 100.00 100.00 99.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.24 100.00 100.00 100.00 K intron_retention Tango5,noncoding_22970,I_chrX_10659836_10661185 chrX - chrX_10656468_10657903 chrX_10656467_10656468;chrX_10657903_10657904 chrX_10656442_10656467;chrX_10657904_10658026 91.67 90.00 100.00 88.89 NA 77.78 100.00 100.00 95.65 NA 100.00 100.00 NA NA 100.00 91.67 NA NA 90.91 94.44 NA 76.92 100.00 88.89 NA NA 100.00 90.91 83.33 100.00 NA NA 90.00 81.82 NA 88.89 88.89 NA NA NA 100.00 94.74 NA NA NA 63.64 NA 77.78 91.67 NA 100.00 NA NA NA NA NA NA NA K jcn_only_AD lt,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22832029_22832085 chr2L_22832038_22832085 chr2L_22832086_22832154;chr2L_22831938_22832028 95.83 92.96 94.79 94.94 93.75 100.00 94.94 97.57 95.45 96.43 96.15 97.59 95.88 96.74 91.92 98.00 97.00 95.83 95.49 95.60 93.22 97.80 94.52 95.95 96.30 98.68 93.75 NA NA 93.75 97.66 93.62 93.48 97.45 94.94 97.01 100.00 100.00 100.00 94.19 100.00 96.28 91.40 93.59 96.67 95.70 100.00 98.53 95.39 89.06 98.15 95.24 100.00 93.59 95.05 92.86 94.34 98.73 K intron_retention CG14969,RI_chr3L_3334172_3334883 chr3L - chr3L_3333693_3333744 chr3L_3333692_3333693;chr3L_3333744_3333745 chr3L_3332965_3333692;chr3L_3333745_3333925 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.70 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 K alternative_donor CG6697 chr3R + chr3R_18887499_18887598 chr3R_18887542_18887598 chr3R_18887599_18888474;chr3R_18887241_18887498 100.00 100.00 95.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 96.43 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 95.45 95.83 100.00 96.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 K intron_retention Ect4,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8098758_8099115 chr3L_8098757_8098758;chr3L_8099115_8099116 chr3L_8098658_8098757;chr3L_8099116_8100029 87.50 91.75 88.43 99.49 98.41 89.02 95.45 94.92 90.50 65.18 92.19 74.87 100.00 92.31 95.60 86.41 96.39 87.88 96.04 82.68 90.00 77.67 80.66 82.86 85.51 91.30 92.05 89.73 62.10 80.61 93.62 68.84 73.39 89.19 87.34 67.86 82.66 89.81 84.57 78.62 79.78 88.41 90.91 85.98 60.42 73.68 83.72 71.57 87.76 87.50 88.67 90.28 66.67 79.07 94.25 82.40 80.77 65.38 K alternative_acceptor CG7546 chr3L + chr3L_7507455_7508147 chr3L_7507455_7507748 chr3L_7506918_7507454;chr3L_7508148_7508681 2.90 3.28 3.39 1.15 2.00 3.77 1.10 2.94 2.53 2.50 1.75 6.19 1.92 4.65 3.85 3.57 2.08 2.00 2.27 3.10 2.70 6.34 2.90 2.21 2.73 2.56 2.72 2.94 3.54 2.24 2.78 3.85 4.92 3.23 4.11 4.60 2.77 3.50 2.40 2.86 2.38 3.03 2.78 2.26 6.38 4.95 2.38 4.85 2.97 3.85 2.40 2.44 5.49 5.19 3.57 2.56 2.46 8.97 K jcn_only_AA CG1890,CG1896,I_chr3R_27573809_27574675 chr3R + chr3R_27569560_27569621 chr3R_27569560_27569614 chr3R_27569187_27569559;chr3R_27569622_27569990 100.00 99.78 100.00 100.00 100.00 100.00 99.79 100.00 100.00 100.00 100.00 99.74 100.00 100.00 100.00 100.00 100.00 100.00 99.69 100.00 100.00 100.00 100.00 100.00 99.38 100.00 100.00 100.00 100.00 99.73 100.00 99.84 99.88 100.00 99.76 100.00 100.00 99.74 100.00 100.00 100.00 100.00 100.00 100.00 99.87 99.90 100.00 100.00 100.00 100.00 100.00 100.00 99.81 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG1970,I_chr4_590803_590943,I_chr4_590970_591026,I_chr4_590970_591030 chr4 - chr4_590970_591034;chr4_590970_591030 chr4_590970_591026 chr4_590944_590969;chr4_591035_591043 0.40 0.82 0.00 0.33 0.00 0.41 1.63 0.27 0.20 0.00 0.00 0.24 0.00 0.00 0.75 0.71 0.49 0.00 0.92 0.19 0.00 1.14 0.63 1.15 0.00 0.58 1.54 1.14 0.65 0.39 0.68 0.85 0.91 0.30 0.00 2.20 0.23 0.00 0.31 0.20 0.00 0.51 0.00 0.76 0.29 0.52 0.40 0.66 0.72 0.00 0.61 0.00 0.53 0.63 0.32 1.09 0.00 0.43 K intron_retention CG1962 chr2L - chr2L_20678953_20679104 chr2L_20678952_20678953;chr2L_20679104_20679105 chr2L_20678921_20678952;chr2L_20679105_20679308 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 95.45 NA NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention zetaCOP chr3L - chr3L_16664943_16665553 chr3L_16664942_16664943;chr3L_16665553_16665554 chr3L_16664764_16664942;chr3L_16665554_16665644 4.32 2.59 5.39 25.99 2.56 3.18 17.20 7.91 3.40 2.88 3.31 3.49 16.38 5.33 4.23 6.80 5.81 3.59 5.28 4.80 4.32 10.71 3.50 4.64 10.08 7.39 6.45 8.91 3.65 3.23 4.50 2.55 6.19 6.46 4.55 18.75 3.94 3.85 2.92 4.35 5.99 5.26 3.38 2.65 3.60 4.10 2.48 3.98 6.08 4.53 4.74 3.88 2.27 2.96 4.71 2.69 2.65 2.81 K alternative_donor ND42,RI_chr3R_17861471_17861539 chr3R + chr3R_17853503_17853741 chr3R_17853547_17853741 chr3R_17853742_17854870;chr3R_17853498_17853502 0.00 0.00 0.00 0.00 2.08 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11876,CG11877 chr3R + chr3R_24938863_24938930 chr3R_24938862_24938863;chr3R_24938930_24938931 chr3R_24938854_24938862;chr3R_24938931_24939171 13.92 9.76 9.52 24.24 17.50 5.71 16.67 9.43 10.20 16.67 16.28 13.89 10.71 16.67 10.34 9.68 6.52 8.89 13.95 10.98 7.69 10.81 38.46 16.22 32.00 24.49 55.56 25.71 63.64 24.00 7.50 12.50 9.09 8.70 11.76 38.89 25.00 25.00 13.79 7.22 21.05 7.27 15.38 10.42 5.19 16.28 20.00 14.29 11.58 17.24 25.00 NA 10.91 26.09 8.89 29.41 36.36 10.61 K intron_retention CG5850,I_chr2L_9963013_9963451 chr2L - chr2L_9962678_9962734 chr2L_9962677_9962678;chr2L_9962734_9962735 chr2L_9962471_9962677;chr2L_9962735_9963012 1.22 1.63 1.54 1.52 0.00 0.00 0.00 0.00 0.89 0.00 1.96 0.57 0.00 0.00 0.73 0.00 0.00 0.00 0.00 2.02 1.94 0.00 3.19 1.36 4.17 1.32 1.73 2.08 6.74 0.00 3.74 1.47 1.25 0.73 2.22 4.04 2.00 0.00 2.07 1.55 4.84 1.05 0.00 0.00 2.04 1.75 2.52 0.00 1.22 0.00 0.69 0.00 0.00 2.11 0.00 0.00 2.14 3.03 K intron_retention CG15118,I_chr2R_15024324_15024455 chr2R - chr2R_15024576_15024628 chr2R_15024575_15024576;chr2R_15024628_15024629 chr2R_15024456_15024575;chr2R_15024629_15024653 96.15 90.91 95.83 97.14 85.00 100.00 96.00 96.15 90.24 NA 100.00 92.31 88.24 93.75 100.00 95.65 100.00 93.75 93.33 92.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 90.91 95.45 84.62 100.00 95.24 NA 100.00 93.75 100.00 NA 95.00 NA 94.59 88.24 100.00 86.67 81.82 100.00 90.00 94.59 91.67 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K alternative_donor sax chr2R + chr2R_3694104_3694576 chr2R_3694518_3694576 chr2R_3694577_3694706;chr2R_3694102_3694103 3.57 2.78 3.33 3.77 3.85 3.85 6.98 1.67 3.70 0.00 0.00 3.08 0.00 4.65 2.27 4.08 2.94 14.81 0.00 3.80 3.85 15.38 2.56 2.44 2.94 2.63 3.85 13.04 13.79 4.35 8.57 5.00 11.11 3.17 2.94 6.90 2.38 3.45 3.57 5.36 7.69 3.57 2.94 5.00 10.00 3.12 2.78 11.54 3.75 5.71 2.13 5.41 2.94 0.00 0.00 0.00 3.23 3.85 K alternative_acceptor I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545781_17545855 chr2R_17545781_17545850 chr2R_17545730_17545780;chr2R_17545856_17545985 70.59 78.57 66.67 71.43 NA 55.56 68.18 72.22 79.17 81.82 64.29 62.50 NA NA 71.43 73.33 NA 46.67 NA 72.00 69.23 NA 47.37 56.25 NA NA 90.00 NA 68.18 70.00 60.00 66.67 88.89 70.59 NA NA 68.00 66.67 73.68 73.68 60.00 75.00 NA 92.31 75.00 64.00 78.95 100.00 50.00 92.86 83.33 88.89 72.73 61.90 90.91 63.64 65.00 68.42 K intron_retention PNUTS,I_chr2L_870553_871317 chr2L + chr2L_870553_871340 chr2L_870552_870553;chr2L_871340_871341 chr2L_870478_870552;chr2L_871341_871417 16.67 7.69 29.41 23.68 9.52 11.11 12.66 6.35 8.33 11.76 9.52 16.36 12.50 21.05 15.79 24.44 0.00 22.22 20.00 20.59 16.67 19.05 12.66 10.64 28.57 16.67 19.15 20.69 24.32 12.50 21.05 40.00 11.32 14.04 19.35 26.83 4.00 4.08 8.82 20.00 44.00 13.33 12.50 2.67 27.78 35.00 14.58 27.50 11.86 25.71 18.87 11.76 22.22 35.00 10.34 11.76 26.53 26.09 K intron_retention Synd chr3R + chr3R_16664938_16665012 chr3R_16664937_16664938;chr3R_16665012_16665013 chr3R_16664780_16664937;chr3R_16665013_16665840 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.47 0.00 0.00 1.08 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.88 1.64 2.60 0.81 0.94 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 1.18 0.54 0.83 0.00 1.51 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.40 K jcn_only_AD l(2)s5379,RI_chr2L_2228057_2229265,I_chr2L_2229012_2229265,I_chr2L_2229179_2229265 chr2L + chr2L_2228057_2229265;chr2L_2227282_2229265 chr2L_2229012_2229265 chr2L_2229266_2229365;chr2L_2227182_2227281 0.00 0.60 0.46 0.00 0.00 0.00 0.00 0.00 0.63 1.55 0.66 0.31 0.00 0.00 0.78 0.00 1.84 0.00 0.42 0.23 0.63 0.53 0.57 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.76 1.41 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.34 0.00 1.26 0.00 0.35 0.47 0.00 0.18 0.00 1.63 0.00 0.00 0.00 0.00 0.80 0.75 0.62 0.16 K alternative_acceptor rudimentary,I_chrX_16561903_16561969 chrX + chrX_16549643_16550417 chrX_16549643_16550361 chrX_16549413_16549642;chrX_16550418_16551189 2.58 2.38 1.64 5.63 0.00 0.00 12.12 3.48 2.46 4.55 5.71 6.25 2.22 1.92 3.70 2.56 6.67 4.44 1.54 2.33 0.00 11.54 4.55 7.41 20.00 9.80 2.27 0.00 6.67 14.29 1.47 6.67 4.65 3.03 6.67 0.00 3.33 3.23 1.67 6.12 NA 2.59 2.17 0.00 0.00 NA 5.56 3.23 4.39 0.00 2.22 0.00 0.00 NA 1.47 0.00 0.00 0.00 K intron_retention TER94,RI_chr2R_5880423_5880471 chr2R + chr2R_5880423_5880488 chr2R_5880422_5880423;chr2R_5880488_5880489 chr2R_5880323_5880422;chr2R_5880489_5880571 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.69 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.47 1.17 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.56 0.00 0.26 0.00 0.00 K intron_retention roq,CG4753 chr3L - chr3L_16367768_16367959 chr3L_16367767_16367768;chr3L_16367959_16367960 chr3L_16367508_16367767;chr3L_16367960_16370110 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10741,CG17689 chr3L + chr3L_13480831_13493999 chr3L_13480830_13480831;chr3L_13493999_13494000 chr3L_13480663_13480830;chr3L_13494000_13494314 3.03 2.13 0.00 7.27 0.00 2.78 2.44 13.73 5.88 0.00 3.57 6.94 12.00 7.41 4.55 11.11 0.00 12.20 4.88 6.10 4.55 6.52 5.63 3.03 0.00 0.00 2.90 12.50 6.35 5.00 0.00 0.00 0.00 7.69 2.78 0.00 1.64 2.90 1.83 4.35 0.00 6.49 0.00 7.69 0.00 0.00 3.03 0.00 7.79 2.35 5.71 9.38 0.00 2.13 7.69 3.45 7.41 0.00 K jcn_only_AD psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6493640_6498054;chr2R_6449696_6498054;chr2R_6457648_6498054 chr2R_6493563_6498054 chr2R_6498055_6499020 0.00 0.00 0.00 2.90 3.33 0.00 2.22 2.50 2.17 3.45 0.00 1.09 0.00 2.38 1.96 0.00 0.00 0.00 3.03 2.33 0.00 4.44 1.39 0.00 0.00 0.00 0.00 19.05 NA 2.50 3.57 NA 2.94 0.00 0.00 0.00 1.16 2.04 1.79 0.00 NA 0.94 0.00 0.00 NA 0.00 0.00 0.00 0.97 0.00 3.45 0.00 0.00 NA 1.96 0.00 0.00 0.00 K alternative_donor CdGAPr chr2L - chr2L_19782826_19791763 chr2L_19782826_19782882 chr2L_19782421_19782825;chr2L_19791764_19791863 2.22 3.70 3.23 3.23 0.00 3.57 3.70 2.38 3.92 0.00 6.67 4.17 4.76 3.57 3.57 1.59 5.56 3.70 5.00 1.43 4.35 4.00 1.33 2.70 2.94 3.57 5.56 3.45 2.38 1.89 1.75 0.00 1.89 2.13 2.44 2.13 2.00 2.94 1.59 1.72 4.55 2.22 5.00 1.85 0.00 0.00 0.00 1.47 1.92 0.00 1.69 3.85 0.00 0.00 2.04 0.00 0.00 0.00 K intron_retention exba,I_chr3R_1425087_1425925,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1424767_1424837 chr3R_1424766_1424767;chr3R_1424837_1424838 chr3R_1424666_1424766;chr3R_1424838_1425086 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 1.25 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ctr1A,I_chrX_6558480_6559032 chrX + chrX_6560303_6560882 chrX_6560302_6560303;chrX_6560882_6560883 chrX_6560273_6560302;chrX_6560883_6561458 28.57 NA NA NA NA NA NA NA 25.00 NA NA 38.89 NA NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA 46.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor exba,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1425890_1426125;chr3R_1425890_1426209 chr3R_1425890_1426009 chr3R_1425790_1425889;chr3R_1426210_1426225 87.50 87.50 90.00 92.86 83.33 87.50 81.25 94.74 92.31 71.43 83.33 83.33 85.71 91.67 88.89 96.30 87.50 81.82 92.86 94.44 80.00 NA 93.33 90.00 83.33 87.50 85.71 80.00 70.00 85.71 84.62 70.00 NA 83.33 90.00 85.71 83.33 80.00 75.00 86.67 66.67 88.89 91.67 92.86 66.67 94.12 83.33 75.00 96.15 88.89 91.67 87.50 100.00 75.00 88.89 87.50 75.00 87.50 K cassette Pkn,CI_chr2R_5143544_5146344,I_chr2R_5171635_5172166 chr2R - chr2R_5143215_5146344;chr2R_5143544_5146344 chr2R_5143544_5144914,chr2R_5143215_5144914;chr2R_5145185_5146344 chr2R_5144915_5145184 chr2R_5143018_5143214;chr2R_5146345_5146444 7.32 2.63 12.50 8.89 8.00 6.45 4.55 2.94 8.47 9.84 4.76 10.91 15.00 4.76 10.00 11.43 4.55 3.45 5.56 13.16 4.76 14.00 8.54 8.33 7.32 5.00 5.06 5.48 7.46 6.67 8.33 10.71 14.58 7.14 9.38 6.56 8.54 7.55 5.10 6.98 4.35 7.81 4.35 5.81 9.38 7.50 7.14 11.76 8.16 4.44 5.88 5.56 8.70 3.85 3.57 9.68 3.85 11.43 K intron_retention Gap1,noncoding_11763,CE_chr3L_9835764_9836327 chr3L - chr3L_9835764_9836331 chr3L_9835763_9835764;chr3L_9836331_9836332 chr3L_9835664_9835763;chr3L_9836332_9836427 0.00 0.00 0.00 3.70 0.00 0.00 4.65 1.67 0.00 0.00 0.00 1.16 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 2.82 1.69 1.67 0.00 0.00 1.96 8.82 0.00 1.47 0.00 6.90 2.78 0.00 6.52 2.33 2.99 0.00 0.00 4.92 4.35 0.00 0.00 0.00 0.00 4.08 0.00 2.86 2.50 0.00 2.60 0.00 0.00 0.00 3.17 0.00 0.00 0.00 K intron_retention CG17838,I_chr3R_16623576_16628011,I_chr3R_16625404_16631668 chr3R + chr3R_16624132_16631668 chr3R_16624131_16624132;chr3R_16631668_16631669 chr3R_16624037_16624131;chr3R_16631669_16631768 8.33 0.00 8.33 13.51 7.14 0.00 20.83 15.09 12.24 0.00 11.11 8.33 0.00 NA 6.90 16.67 5.56 11.11 10.53 6.90 15.79 13.33 3.33 6.06 3.85 10.71 6.25 25.00 7.69 12.00 8.00 NA 7.50 13.64 8.33 2.70 0.00 0.00 4.44 15.62 NA 11.48 10.00 8.33 NA 10.53 0.00 10.81 16.28 NA 8.11 0.00 NA NA 18.52 NA NA 21.43 K cassette CG10737 chr2R + chr2R_15051681_15058190 chr2R_15051681_15052668;chr2R_15053032_15058190 chr2R_15052669_15053031 chr2R_15051670_15051680;chr2R_15058191_15058666 33.33 NA NA 25.00 NA NA 55.56 30.00 54.55 NA NA 83.33 NA 66.67 20.00 85.71 33.33 NA 25.00 55.56 NA NA NA NA NA 30.00 75.00 NA NA NA 15.38 NA NA 33.33 NA NA NA NA NA NA NA 17.65 33.33 NA NA NA NA 42.86 33.33 NA 75.00 NA NA NA 10.00 NA 80.00 NA K alternative_last_exon CG34383,noncoding_16598,RI_chr3R_9587500_9588422 chr3R + chr3R_9576169_9582097 chr3R_9576169_9577965 chr3R_9582098_9582384 chr3R_9577966_9578547 chr3R_9576161_9576168 5.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA N cassette Dscam,F_chr2R_3219886_3225754,I_chr2R_3219886_3226532,FI_chr2R_3219886_3227659,F_chr2R_3219886_3228449,F_chr2R_3219886_3228832,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3219886_3235353 chr2R_3219886_3223220;chr2R_3223509_3235353 chr2R_3223221_3223508 chr2R_3219786_3219885;chr2R_3235354_3235453 44.23 22.22 36.36 22.22 NA 100.00 27.27 23.53 100.00 NA NA 100.00 16.67 NA NA 100.00 100.00 NA NA 100.00 NA 14.29 100.00 NA NA NA NA NA 25.00 100.00 NA NA 5.88 NA NA NA 100.00 NA 100.00 25.00 NA 100.00 NA NA NA NA NA NA 50.00 NA 20.00 NA NA NA 38.46 NA NA NA K intron_retention l(1)dd4 chrX - chrX_13636011_13636081 chrX_13636010_13636011;chrX_13636081_13636082 chrX_13635717_13636010;chrX_13636082_13636274 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 6.06 0.00 NA 5.00 0.00 0.00 2.70 0.00 15.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 3.23 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 4.35 4.88 K intron_retention PPP4R2r chrX + chrX_10373054_10373505 chrX_10373053_10373054;chrX_10373505_10373506 chrX_10372866_10373053;chrX_10373506_10373750 96.43 NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA 88.89 NA 90.00 NA 88.89 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 88.89 NA 100.00 NA NA NA 100.00 92.86 NA NA NA NA NA NA NA NA 100.00 N cassette shep,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5154702_5156066 chr3L_5154702_5155555;chr3L_5155732_5156066 chr3L_5155556_5155731 chr3L_5153808_5154701;chr3L_5156067_5156229 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG3271,CG9422,I_chr2R_2584435_2585553 chr2R + chr2R_2562233_2562285 chr2R_2562232_2562233;chr2R_2562285_2562286 chr2R_2561766_2562232;chr2R_2562286_2562649 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA N cassette CG6912 chr3R - chr3R_10962115_10962431 chr3R_10962115_10962204;chr3R_10962254_10962431 chr3R_10962205_10962253 chr3R_10962052_10962114;chr3R_10962432_10962439 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 45.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K multi_cassette trio,I_chr3L_999683_1009321 chr3L - chr3L_999683_1009321 chr3L_999683_1003395;chr3L_1003654_1003727;chr3L_1003822_1009321 chr3L_1003396_1003653;chr3L_1003728_1003821 chr3L_999617_999682;chr3L_1009322_1009379 100.00 100.00 100.00 99.16 100.00 100.00 100.00 98.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.55 99.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.20 100.00 100.00 100.00 99.47 100.00 100.00 100.00 99.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.35 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Sema-1b,RI_chr2R_13565425_13565874 chr2R - chr2R_13566288_13566648 chr2R_13566287_13566288;chr2R_13566648_13566649 chr2R_13565777_13566287;chr2R_13566649_13566698 70.83 NA 70.00 63.64 NA NA 73.08 53.85 58.62 NA NA 68.42 100.00 53.85 NA 84.62 50.00 NA 73.33 57.89 NA 77.78 90.00 NA NA 66.67 NA NA NA 60.00 92.86 NA NA 72.22 78.57 70.00 NA NA NA 83.33 NA 66.67 90.00 66.67 NA 75.00 NA 83.33 70.83 NA 53.85 NA NA NA 80.00 NA NA NA K intron_retention foi,I_chr3L_8524905_8524976 chr3L + chr3L_8525975_8526040 chr3L_8525974_8525975;chr3L_8526040_8526041 chr3L_8524977_8525974;chr3L_8526041_8527112 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.80 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Dsp1,I_chrX_16231287_16231413 chrX + chrX_16227797_16228333 chrX_16227796_16227797;chrX_16228333_16228334 chrX_16227698_16227796;chrX_16228334_16228446 100.00 97.30 100.00 100.00 100.00 100.00 100.00 98.28 97.83 96.15 95.24 98.61 100.00 97.22 100.00 100.00 96.67 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 98.48 96.77 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 97.62 NA 100.00 100.00 96.97 98.61 96.97 100.00 100.00 95.24 100.00 97.22 100.00 100.00 100.00 K intron_retention RhoBTB,RI_chr3L_20370940_20371530,I_chr3L_20374844_20374891 chr3L + chr3L_20374393_20374667 chr3L_20374392_20374393;chr3L_20374667_20374668 chr3L_20374122_20374392;chr3L_20374668_20374821 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA NA 3.33 0.00 0.00 0.00 0.00 NA 0.00 NA 7.14 0.00 0.00 0.00 0.00 NA NA 3.70 NA 0.00 0.00 0.00 0.00 3.12 6.90 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.63 5.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG30428 chr2R + chr2R_21141602_21141650 chr2R_21141601_21141602;chr2R_21141650_21141651 chr2R_21141343_21141601;chr2R_21141651_21141695 16.00 NA NA 58.33 NA NA NA NA 4.76 NA NA 6.67 NA 20.00 NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA 16.00 NA NA NA NA NA NA NA NA NA K alternative_donor SPoCk,I_chr3L_22776339_22776519 chr3L + chr3L_22766817_22767837 chr3L_22766852_22767837 chr3L_22767838_22768237;chr3L_22766783_22766816 25.66 NA NA 25.00 NA NA 23.08 NA 26.32 15.38 NA 15.15 NA NA 27.27 NA NA NA 36.36 30.77 NA NA 40.00 NA NA NA 25.00 NA 55.56 NA 25.00 NA NA 14.29 21.43 55.56 25.00 NA NA 15.38 NA 23.81 NA NA NA NA NA 55.56 33.33 NA 41.67 NA NA NA 36.36 NA NA NA K jcn_only_AD CG14476,I_chrX_21474758_21476200,I_chrX_21475620_21475965 chrX - chrX_21475620_21476104;chrX_21475620_21476178 chrX_21475620_21476200 chrX_21475520_21475619;chrX_21476201_21476209 94.35 88.89 84.93 87.68 90.14 90.91 91.74 97.66 94.74 97.06 91.38 94.22 94.78 92.13 81.91 89.66 96.55 94.44 97.06 92.98 89.04 93.48 98.63 96.30 94.59 89.77 98.25 96.88 82.14 NA 95.70 NA NA 94.74 93.33 92.86 96.67 87.50 97.44 92.16 NA 93.05 90.14 95.45 NA 96.88 97.14 NA 95.09 96.61 94.12 98.18 92.86 91.30 94.35 96.77 97.14 95.00 K intron_retention SMC2,I_chr2R_10737857_10737917 chr2R - chr2R_10737615_10737667 chr2R_10737614_10737615;chr2R_10737667_10737668 chr2R_10736135_10737614;chr2R_10737668_10737856 0.00 0.00 0.00 0.00 0.00 3.45 1.72 0.00 2.27 NA 0.00 0.00 2.00 2.27 1.92 1.09 0.00 0.00 6.56 2.59 0.00 0.00 2.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 K jcn_only_AA CG7519 chr3L + chr3L_21486456_21486546 chr3L_21486456_21486519 chr3L_21486348_21486455;chr3L_21486547_21487010 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 98.15 100.00 100.00 98.70 100.00 100.00 100.00 98.68 100.00 100.00 100.00 100.00 100.00 97.83 98.48 100.00 98.53 99.01 100.00 100.00 100.00 100.00 98.72 100.00 98.63 100.00 98.39 100.00 98.94 100.00 98.18 100.00 99.26 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.28 99.55 K intron_retention noncoding_4282,RI_chr2L_22131700_22140718 chr2L + chr2L_22131700_22132117 chr2L_22131699_22131700;chr2L_22132117_22132118 chr2L_22131600_22131699;chr2L_22132118_22132177 96.43 96.97 96.15 96.43 100.00 95.45 94.37 98.21 96.10 83.33 88.46 100.00 100.00 96.15 100.00 98.21 92.86 95.00 100.00 98.53 100.00 NA 97.50 97.56 96.43 94.74 96.67 93.33 100.00 93.33 95.83 92.86 93.33 96.15 96.30 95.45 100.00 95.45 96.97 96.15 100.00 98.04 100.00 92.59 92.31 100.00 97.44 94.12 98.00 97.50 96.43 94.74 100.00 100.00 97.14 97.22 92.68 88.89 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2393243 chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664 chrX_2387149_2387248;chrX_2393244_2393291 0.00 NA NA NA NA NA NA NA NA NA NA 2.70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor RpL17,I_chrX_6637182_6638207,RI_chrX_6637182_6637528,I_chrX_6637182_6637973,snoRNA:Psi28S-1232 chrX - chrX_6637182_6638228;chrX_6637182_6638141;chrX_6637182_6637982 chrX_6637182_6638178 chrX_6637093_6637181;chrX_6638229_6638235 2.13 2.86 2.50 3.70 4.08 2.56 4.44 0.00 2.86 2.27 0.00 3.28 0.00 3.12 4.44 3.03 3.57 2.17 2.56 1.14 2.78 0.86 2.78 4.88 0.00 2.13 2.33 1.85 3.23 1.14 2.08 0.92 0.57 4.44 0.00 1.89 6.25 3.57 1.85 0.42 0.00 2.22 2.56 0.93 1.72 0.00 0.00 0.00 1.89 4.08 0.00 4.76 0.67 2.70 2.00 0.00 1.15 0.58 K cassette l(3)82Fd,I_chr3R_1125296_1161435,I_chr3R_1125296_1175189,I_chr3R_1129905_1148709,I_chr3R_1129905_1160126,I_chr3R_1131693_1133665,I_chr3R_1147660_1148709 chr3R - chr3R_1125296_1138710 chr3R_1125296_1129832;chr3R_1129905_1138710 chr3R_1129833_1129904 chr3R_1125196_1125295;chr3R_1138711_1138751 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 91.67 100.00 100.00 NA 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention gish,I_chr3R_12125412_12126290 chr3R + chr3R_12125412_12126966 chr3R_12125411_12125412;chr3R_12126966_12126967 chr3R_12125394_12125411;chr3R_12126967_12127073 4.76 NA 8.70 13.33 NA NA NA NA 9.38 NA NA 2.70 NA 0.00 7.69 11.76 NA NA NA 5.81 NA 0.00 9.38 5.26 NA NA 10.53 40.00 0.00 0.00 NA NA 0.00 NA 17.65 0.00 3.70 0.00 6.67 6.25 0.00 15.00 NA 0.00 0.00 9.09 4.76 9.52 15.79 0.00 10.00 0.00 0.00 0.00 15.38 0.00 0.00 0.00 K intron_retention CG8121,RI_chr3R_5183458_5183705 chr3R + chr3R_5160975_5161221 chr3R_5160974_5160975;chr3R_5161221_5161222 chr3R_5160915_5160974;chr3R_5161222_5161357 23.21 NA NA 45.45 NA NA 36.36 NA 33.33 NA NA 20.00 NA NA NA 21.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA 14.29 NA NA NA 15.38 NA NA NA 7.14 30.77 NA NA NA NA NA NA NA NA NA K jcn_only_AD Rph,I_chrX_10647710_10648325,RI_chrX_10649048_10651427 chrX - chrX_10647710_10651427 chrX_10647710_10648325 chrX_10647610_10647709;chrX_10651428_10651527 13.34 NA 14.29 13.64 NA 4.55 0.00 23.08 13.04 NA NA 12.50 16.67 NA 15.15 NA NA 8.33 NA 8.70 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA 14.71 NA 9.09 NA NA NA NA 23.26 NA 15.00 NA NA NA 4.35 NA NA NA K intron_retention Nplp2,I_chr3L_13349726_13349896 chr3L + chr3L_13349953_13350107 chr3L_13349952_13349953;chr3L_13350107_13350108 chr3L_13349897_13349952;chr3L_13350108_13350349 0.03 0.02 0.02 0.04 0.00 0.01 0.05 0.04 0.04 0.00 0.04 0.03 0.03 0.05 0.03 0.04 0.04 0.02 0.03 0.02 0.03 0.05 0.03 0.02 0.00 0.03 0.04 0.04 0.04 0.02 0.03 0.03 0.00 0.04 0.02 0.10 0.03 0.00 0.03 0.04 0.01 0.03 0.05 0.00 0.04 0.06 0.01 0.05 0.04 0.02 0.00 0.02 0.07 0.03 0.04 0.03 0.04 0.05 K alternative_donor Dyb,I_chr2R_8338101_8339173,I_chr2R_8348603_8351844 chr2R + chr2R_8324915_8335263 chr2R_8325396_8335263 chr2R_8335264_8335605;chr2R_8324876_8324914 92.31 100.00 100.00 93.33 100.00 90.91 92.31 100.00 95.00 72.73 100.00 80.00 90.00 100.00 100.00 93.33 87.50 100.00 100.00 94.74 100.00 70.00 86.67 91.67 100.00 92.86 76.92 60.00 90.00 91.67 100.00 60.00 82.35 94.44 90.91 100.00 87.50 100.00 90.00 88.00 88.89 85.00 90.00 92.31 87.50 91.67 100.00 87.50 94.74 100.00 92.31 87.50 100.00 80.00 92.31 100.00 87.50 94.12 K jcn_only_AD RpS18,CG8908,EI_chr2R_16151918_16151997,I_chr2R_16151918_16152036,I_chr2R_16151938_16152065,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151938_16151997;chr2R_16151918_16151997 chr2R_16151942_16151997 chr2R_16151998_16152066;chr2R_16151852_16151917 0.02 0.01 0.04 0.04 0.00 0.03 0.03 0.03 0.01 0.00 0.02 0.03 0.03 0.00 0.01 0.00 0.03 0.01 0.00 0.03 0.05 0.00 0.00 0.02 0.06 0.07 0.02 0.02 0.05 0.01 0.06 0.02 0.02 0.01 0.05 0.01 0.02 0.01 0.02 0.02 0.00 0.03 0.00 0.02 0.00 0.03 0.03 0.05 0.03 0.02 0.02 0.05 0.03 0.01 0.05 0.01 0.01 0.02 K alternative_acceptor AP-47,I_chr3R_5385123_5385196 chr3R - chr3R_5385123_5385196 chr3R_5385134_5385196 chr3R_5385197_5385206;chr3R_5385023_5385122 100.00 100.00 96.30 97.67 100.00 100.00 97.56 97.67 100.00 95.65 100.00 97.92 100.00 100.00 96.43 100.00 96.43 100.00 97.14 98.44 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 97.50 95.24 95.65 97.14 96.97 100.00 100.00 100.00 100.00 100.00 95.65 100.00 96.15 97.30 100.00 97.50 100.00 95.65 97.87 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 96.55 K cassette CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4985425_4985861 chr2L_4985425_4985732;chr2L_4985763_4985861 chr2L_4985733_4985762 chr2L_4985358_4985424;chr2L_4985862_4985954 0.00 0.00 2.17 1.67 0.00 3.12 0.00 1.27 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 1.32 0.00 0.00 2.13 0.00 NA 1.92 1.89 0.00 1.82 0.00 0.00 1.39 1.54 0.00 1.49 3.12 1.96 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Mbs,I_chr3L_16045251_16046108,I_chr3L_16057100_16057329 chr3L + chr3L_16056274_16056985 chr3L_16056274_16056642;chr3L_16056838_16056985 chr3L_16056643_16056837 chr3L_16056188_16056273;chr3L_16056986_16057097 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Dp,I_chr2R_9111166_9112971,REI_chr2R_9113257_9113316 chr2R + chr2R_9112640_9112971 chr2R_9112639_9112640;chr2R_9112971_9112972 chr2R_9112620_9112639;chr2R_9112972_9113071 100.00 100.00 100.00 94.44 100.00 NA 100.00 100.00 95.45 100.00 NA 100.00 100.00 NA 91.67 92.31 100.00 100.00 100.00 94.44 NA 100.00 89.47 93.75 100.00 100.00 94.12 91.67 100.00 90.91 92.86 100.00 100.00 100.00 NA 100.00 94.12 NA 100.00 100.00 87.50 93.75 88.89 92.86 100.00 100.00 NA 100.00 93.33 100.00 100.00 100.00 100.00 NA 100.00 NA 88.89 90.00 K jcn_only_AD CG18766,I_chr3R_23069667_23070256,I_chr3R_23069667_23070318,RI_chr3R_23069667_23070361,I_chr3R_23069667_23070365 chr3R - chr3R_23069667_23070732;chr3R_23069667_23070911 chr3R_23069667_23070738 chr3R_23069567_23069666;chr3R_23070912_23070951 86.21 92.16 82.72 83.33 76.47 75.47 80.31 82.61 80.61 92.00 87.50 78.81 78.26 84.15 72.60 80.00 88.24 83.08 86.49 83.02 72.41 77.78 91.25 82.35 94.34 92.16 92.96 91.67 82.22 90.00 89.66 72.92 80.88 79.51 86.21 90.77 86.89 90.91 90.20 81.43 89.06 77.60 80.00 78.69 73.21 93.46 86.57 90.77 83.94 90.79 86.75 89.13 87.18 89.47 79.78 90.41 89.33 93.10 K multi_cassette CG40263,F_chr2RHet_1265687_1293040,F_chr2RHet_1298459_1298703,F_chr2RHet_1298459_1311408,F_chr2RHet_1298885_1299622,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1265687_1324445 chr2RHet_1265687_1286305;chr2RHet_1286572_1293055;chr2RHet_1293175_1293235;chr2RHet_1293394_1324445 chr2RHet_1286306_1286571;chr2RHet_1293056_1293174;chr2RHet_1293236_1293393 chr2RHet_1265587_1265686;chr2RHet_1324446_1324530 45.74 43.75 50.00 36.36 55.56 42.11 40.00 46.03 50.00 50.00 NA 42.86 60.00 58.82 61.11 43.75 71.43 66.67 54.55 82.61 50.00 33.33 41.67 37.50 29.41 40.00 66.67 20.00 22.22 71.43 66.67 42.86 28.57 56.41 33.33 22.22 50.00 60.00 45.45 63.16 12.50 55.88 53.33 53.33 20.00 36.84 42.86 80.00 51.52 18.18 64.71 50.00 22.22 40.00 75.00 35.71 25.00 16.67 K jcn_only_AD SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_17005113_17011269 chr3R_17011031_17011269 chr3R_17011270_17011306 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 NA K intron_retention Upf2,I_chrX_7969268_7969358,I_chrX_7969312_7969358 chrX - chrX_7969303_7969358 chrX_7969302_7969303;chrX_7969358_7969359 chrX_7969212_7969302;chrX_7969359_7969458 86.60 NA NA 90.91 NA 87.50 75.00 100.00 85.71 NA NA 75.00 NA NA 90.00 94.44 NA 90.00 100.00 92.86 NA 53.33 100.00 88.89 NA 78.57 100.00 100.00 NA NA 57.14 NA NA 88.24 NA NA 63.64 NA NA 76.92 NA 76.92 77.78 NA NA NA NA 66.67 65.00 NA NA NA NA NA 76.92 NA NA NA K intron_retention cenG1A,RI_chr2L_13836433_13850514 chr2L + chr2L_13879707_13891299 chr2L_13879706_13879707;chr2L_13891299_13891300 chr2L_13879565_13879706;chr2L_13891300_13891532 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 8.33 1.96 0.00 0.00 NA 0.00 0.00 NA 8.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA NA NA K intron_retention CG1707,I_chr2R_3281467_3281526 chr2R - chr2R_3281467_3282935 chr2R_3281466_3281467;chr2R_3282935_3282936 chr2R_3281367_3281466;chr2R_3282936_3283022 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA eIF-4a,I_chr2L_5985221_5985289 chr2L + chr2L_5985221_5985289;chr2L_5985221_5985342 chr2L_5985221_5985338 chr2L_5985121_5985220;chr2L_5985343_5985389 98.84 98.70 99.02 98.64 99.05 98.86 98.45 98.96 98.62 98.93 98.98 98.73 99.08 99.19 98.57 98.62 98.79 98.44 98.64 99.03 98.97 99.32 98.88 98.80 99.04 98.84 98.58 99.02 98.70 99.45 98.81 98.84 98.91 98.76 98.95 99.09 98.40 99.07 98.69 99.38 98.92 98.83 98.48 98.83 98.52 99.18 98.97 98.79 98.93 98.89 98.86 98.67 98.60 98.59 98.67 98.85 98.77 99.00 K jcn_only_AD Imp,I_chrX_10699490_10700695,RI_chrX_10699665_10700501,RI_chrX_10699665_10700695 chrX - chrX_10699503_10700474;chrX_10699503_10700695 chrX_10699503_10700501 chrX_10699299_10699502;chrX_10700696_10700795 64.28 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 61.90 NA NA NA NA NA NA NA NA NA K jcn_only_AA Plc21C,I_chr2L_343730_344038 chr2L + chr2L_344490_344575 chr2L_344490_344554 chr2L_344042_344489;chr2L_344576_344947 35.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 35.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG14657 chr3R - chr3R_645460_645515 chr3R_645459_645460;chr3R_645515_645516 chr3R_643732_645459;chr3R_645516_645632 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 8.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_150069_150307;chr4_150069_150180;chr4_150069_150378;chr4_150069_150295;chr4_150069_150205 chr4_150069_150353 chr4_149969_150068;chr4_150379_150379 10.29 NA NA 8.77 6.67 9.52 9.76 18.52 6.52 NA NA 12.50 3.33 0.00 12.50 6.67 11.63 9.52 9.26 12.96 NA NA NA NA NA 23.08 NA NA NA NA 20.51 NA NA 15.58 NA NA NA NA NA NA NA 22.81 0.00 NA NA NA NA NA 15.07 NA NA NA NA NA 10.81 NA NA NA K jcn_only_AD CREF_chr3R_5589662_5589762,CG8500 chr3R + chr3R_5610483_5611473 chr3R_5610546_5611473 chr3R_5611474_5611635;chr3R_5610477_5610482 0.00 NA 0.00 0.00 NA NA 4.76 0.00 0.00 NA NA 0.00 0.00 4.35 0.00 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 2.44 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K alternative_donor sdk,I_chrX_581050_581605,I_chrX_581108_581660,I_chrX_625220_634459,I_chrX_636395_636562 chrX + chrX_581043_581605;chrX_581108_581605;chrX_580974_581605 chrX_581160_581605 chrX_581606_581705;chrX_580950_580973 16.67 25.00 22.22 11.11 NA 16.67 27.27 16.67 22.22 0.00 NA 18.18 0.00 20.00 0.00 16.67 25.00 NA 33.33 12.50 0.00 30.00 12.50 25.00 50.00 NA 28.57 25.00 14.29 44.44 12.50 NA 5.00 16.67 12.50 22.22 0.00 20.00 25.00 7.14 NA 25.00 0.00 12.50 NA 0.00 25.00 11.76 33.33 NA 11.11 25.00 NA NA 33.33 NA NA 16.67 K intron_retention spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20345260_20345524 chr2L_20345259_20345260;chr2L_20345524_20345525 chr2L_20345192_20345259;chr2L_20345525_20345670 14.29 6.90 3.23 26.92 25.00 11.11 23.08 28.57 18.87 NA 20.00 14.29 14.29 13.04 18.75 27.78 9.52 14.81 18.18 18.92 16.67 14.77 10.91 11.43 17.65 3.70 4.65 25.64 13.64 21.74 19.15 NA 21.43 19.35 6.67 10.53 4.26 7.41 6.67 18.18 12.50 13.21 30.77 16.13 11.76 19.05 13.79 NA 17.39 10.71 11.90 5.88 NA 0.00 24.24 9.52 3.85 NA N jcn_only_AD scro chr3LHet + chr3LHet_223864_224236;chr3LHet_217520_224236 chr3LHet_211841_224236 chr3LHet_224237_224245 2.08 NA NA 13.64 NA NA NA 4.17 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG17385,I_chr2R_10298790_10298843 chr2R - chr2R_10298790_10298841;chr2R_10298790_10298843 chr2R_10298790_10298847 chr2R_10298690_10298789;chr2R_10298848_10298916 99.61 98.77 99.61 99.06 100.00 100.00 99.67 99.68 100.00 99.57 99.49 99.77 100.00 99.45 99.59 98.77 100.00 99.06 99.55 99.56 99.52 100.00 99.33 99.66 99.45 99.16 100.00 99.65 99.77 99.37 98.82 100.00 100.00 99.68 99.53 99.60 99.16 100.00 99.70 99.59 99.74 98.90 100.00 100.00 99.60 99.65 100.00 99.85 99.50 99.22 100.00 99.46 100.00 99.58 100.00 99.64 99.35 99.25 K intron_retention CG17683,I_chr2R_18774_18869 chr2R + chr2R_18630_18680 chr2R_18629_18630;chr2R_18680_18681 chr2R_18552_18629;chr2R_18681_18747 25.00 NA NA 55.00 NA NA 20.00 15.38 31.82 NA NA 15.38 NA 54.55 NA 26.09 NA NA NA 40.91 NA NA 21.05 30.77 NA NA 50.00 41.67 NA NA 10.53 NA NA 36.36 25.00 46.15 NA NA NA 25.00 NA 14.29 NA 10.53 NA NA 25.00 NA 24.00 NA 38.89 NA NA NA NA NA 25.00 NA K jcn_only_AA Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754284_15755172;chrX_15754284_15755148;chrX_15754284_15755021;chrX_15754284_15755184;chrX_15754284_15755409;chrX_15754284_15755256;chrX_15754284_15754777;chrX_15754284_15755268 chrX_15754284_15755416 chrX_15754256_15754283 0.91 1.69 1.53 0.92 1.02 0.00 0.80 0.41 1.18 0.00 0.00 0.80 1.61 0.67 0.85 1.06 2.75 0.00 0.00 1.37 1.16 0.00 0.00 2.70 2.04 0.83 0.00 1.69 1.49 0.00 0.56 0.00 1.22 0.77 0.00 0.93 2.02 2.17 2.17 2.04 1.35 0.46 0.78 2.41 0.00 0.00 1.00 0.91 0.00 0.00 0.00 1.36 0.00 1.19 0.00 2.04 2.54 1.23 K jcn_only_AD CG2118,I_chr3R_27619193_27619598 chr3R - chr3R_27619193_27619598 chr3R_27619193_27619299 chr3R_27619093_27619192;chr3R_27619599_27619627 100.00 97.30 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 97.67 100.00 100.00 100.00 96.00 100.00 100.00 NA 100.00 100.00 100.00 94.59 100.00 NA NA NA 100.00 NA NA 97.87 NA NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 98.53 NA 100.00 NA NA NA 100.00 100.00 NA NA K jcn_only_AD kst,I_chr3L_3367008_3367514 chr3L + chr3L_3366963_3367514;chr3L_3367011_3367514;chr3L_3367008_3367514;chr3L_3366774_3367514 chr3L_3367216_3367514 chr3L_3367515_3367614 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 K intron_retention CanB2,CG12825 chr2R + chr2R_3675038_3675095 chr2R_3675037_3675038;chr2R_3675095_3675096 chr2R_3674969_3675037;chr2R_3675096_3675170 1.75 0.00 1.38 3.33 1.72 1.75 1.10 1.96 2.21 0.00 3.23 3.20 1.98 1.64 0.00 0.96 3.31 0.85 2.96 1.26 1.52 1.89 1.48 1.64 6.32 4.48 2.70 4.49 12.00 0.72 1.29 1.75 2.56 1.75 3.92 3.31 1.50 0.94 3.33 2.21 1.83 3.15 1.72 1.45 0.00 1.90 3.23 2.56 1.51 1.61 1.35 0.00 0.00 4.59 1.26 3.49 2.01 0.96 K alternative_acceptor fra chr2R + chr2R_8445281_8445922;chr2R_8445281_8446375 chr2R_8445281_8445949 chr2R_8445263_8445280;chr2R_8446376_8446583 33.33 60.00 27.27 22.22 25.00 25.00 40.00 42.86 33.33 20.00 33.33 25.00 14.29 14.29 11.11 10.00 37.50 12.50 11.11 33.33 40.00 33.33 44.44 38.46 66.67 20.00 55.56 25.00 50.00 36.36 25.00 40.00 43.75 14.29 30.00 50.00 20.00 37.50 45.45 47.06 80.00 17.65 14.29 45.45 60.00 66.67 25.00 14.29 23.53 40.00 52.94 40.00 25.00 33.33 20.00 57.14 NA 72.73 K alternative_donor cav chr3R + chr3R_20047648_20048064;chr3R_20047349_20048064 chr3R_20047476_20048064 chr3R_20048065_20048196;chr3R_20047247_20047348 40.00 NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor pps chr3R + chr3R_8242305_8242369 chr3R_8242311_8242369 chr3R_8242370_8242851;chr3R_8240593_8242304 97.50 96.67 100.00 96.55 94.74 100.00 96.43 97.14 97.73 96.55 94.12 95.45 100.00 95.65 100.00 96.30 95.00 95.45 100.00 96.67 95.00 97.37 98.18 97.50 100.00 94.74 100.00 93.18 100.00 97.78 100.00 96.97 98.51 100.00 96.77 100.00 97.47 97.50 100.00 97.14 100.00 97.62 100.00 97.62 97.44 97.87 96.30 98.91 97.67 100.00 100.00 95.45 100.00 96.15 100.00 96.30 95.65 97.37 K intron_retention cryptocephal,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21318420_21318484 chr2L_21318419_21318420;chr2L_21318484_21318485 chr2L_21318351_21318419;chr2L_21318485_21318548 0.10 0.00 0.00 0.30 0.15 0.00 0.23 0.30 0.06 0.00 0.00 0.13 0.00 0.00 0.23 0.14 0.00 0.00 0.00 0.12 0.15 0.00 0.00 0.13 0.32 0.00 0.51 1.39 0.00 0.18 0.10 0.00 0.31 0.34 0.00 0.00 0.14 0.00 0.00 0.29 0.00 0.14 0.19 0.11 0.00 0.37 0.17 0.00 0.00 0.15 0.26 0.00 0.00 0.00 0.10 0.16 0.15 0.00 K jcn_only_AD Atg18,I_chr3L_8182683_8182941 chr3L + chr3L_8180503_8180578;chr3L_8180294_8180578 chr3L_8180319_8180578 chr3L_8180579_8180676;chr3L_8180118_8180293 4.48 6.82 2.41 5.07 3.03 4.35 2.86 10.81 4.09 4.88 0.00 2.99 3.03 2.86 4.67 7.45 9.76 4.48 6.67 8.11 3.41 4.20 3.05 0.93 3.95 4.55 6.00 7.69 13.85 3.09 5.50 4.08 9.82 6.72 6.49 3.64 1.63 0.87 5.56 6.87 8.33 6.15 5.08 4.81 1.22 4.35 3.00 7.53 5.81 4.23 2.88 6.90 4.69 2.94 5.17 2.60 0.88 2.06 K alternative_acceptor Usp7,I_chrX_11919055_11919146,I_chrX_11922059_11922456 chrX - chrX_11919079_11919146;chrX_11919091_11919146 chrX_11919055_11919146 chrX_11919147_11919211;chrX_11918989_11919054 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.88 0.00 0.00 0.00 0.00 0.00 0.00 1.35 1.92 0.00 0.00 1.01 0.00 0.00 0.00 2.04 2.56 2.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 2.78 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 3.45 0.00 2.13 0.00 0.00 0.00 0.00 3.45 5.26 0.00 1.54 0.00 2.13 0.00 K jcn_only_AA RI_chr2L_8218680_8218853,Pvr,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8223345_8223824 chr2L_8223450_8223824 chr2L_8223825_8223937;chr2L_8223254_8223344 100.00 100.00 100.00 99.68 100.00 100.00 99.81 99.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.39 99.87 100.00 100.00 99.61 100.00 100.00 99.65 100.00 99.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.59 K jcn_only_AA I_chr3R_25628402_25628511,ncd,I_chr3R_25632049_25632125,RI_chr3R_25658089_25658914 chr3R - chr3R_25632049_25632125 chr3R_25632067_25632125 chr3R_25632126_25632194;chr3R_25631983_25632048 99.71 99.68 98.95 99.09 100.00 100.00 99.26 99.53 99.74 99.12 99.34 99.72 100.00 100.00 99.49 99.21 99.37 100.00 100.00 99.72 100.00 98.01 98.40 99.42 99.52 100.00 100.00 100.00 100.00 100.00 99.14 99.19 100.00 99.60 99.47 98.77 99.60 99.68 99.76 99.17 98.51 99.47 98.80 100.00 99.65 100.00 100.00 100.00 99.71 100.00 99.72 100.00 100.00 98.89 100.00 100.00 100.00 99.56 N intron_retention lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6394546_6419543,RI_chr2R_6403557_6403850,I_chr2R_6403557_6406705,I_chr2R_6404486_6419543,R_chr2R_6408775_6419537,I_chr2R_6409616_6419543,I_chr2R_6413368_6414281,I_chr2R_6419625_6419686,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6398510_6403339 chr2R_6398509_6398510;chr2R_6403339_6403340 chr2R_6398477_6398509;chr2R_6403340_6403556 63.16 NA 100.00 51.92 NA NA 53.66 70.00 69.23 NA 46.67 100.00 63.16 100.00 71.43 75.86 100.00 29.41 100.00 64.71 100.00 44.44 100.00 43.75 38.89 28.57 100.00 NA 17.39 37.50 100.00 NA 100.00 100.00 NA NA 50.00 NA 42.11 39.13 27.78 100.00 NA 56.25 19.05 30.77 NA 50.00 66.67 NA 100.00 NA NA NA 62.50 NA NA NA K alternative_acceptor CG7375 chr3L - chr3L_8190803_8190878 chr3L_8190806_8190878 chr3L_8190879_8190964;chr3L_8190622_8190802 6.25 7.02 7.14 9.28 4.65 5.88 7.14 5.81 4.85 3.85 4.26 9.33 6.12 3.77 6.25 5.00 6.52 7.32 6.25 7.37 6.12 1.49 6.82 1.82 8.89 10.53 14.29 7.32 19.44 2.70 8.06 5.77 6.00 5.48 11.76 4.76 8.47 5.00 8.16 4.84 6.82 9.78 2.08 6.35 7.50 10.00 3.33 2.94 5.10 8.05 6.56 7.89 4.65 5.56 3.57 1.67 7.46 8.22 K intron_retention I_chrX_16309561_16309689,hang,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16323441_16324653 chrX_16323440_16323441;chrX_16324653_16324654 chrX_16323093_16323440;chrX_16324654_16324797 16.42 15.94 9.21 15.38 14.29 11.76 18.42 8.53 19.39 16.33 8.33 15.13 18.18 23.19 17.11 23.15 16.98 16.22 9.46 16.76 9.86 36.28 11.11 13.25 22.08 12.31 13.89 18.31 22.97 19.39 11.76 22.50 20.54 11.97 20.37 21.79 17.46 18.95 15.15 18.02 4.55 15.69 11.29 17.86 20.59 14.00 15.56 17.58 16.42 14.29 14.40 22.00 15.56 27.27 13.58 18.75 19.35 18.52 K alternative_acceptor RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817 chr2R + chr2R_15330246_15330305;chr2R_15330246_15330317 chr2R_15330246_15330292 chr2R_15330177_15330245;chr2R_15330318_15330383 0.04 0.03 0.04 0.05 0.05 0.04 0.05 0.07 0.02 0.06 0.04 0.02 0.05 0.06 0.03 0.06 0.00 0.00 0.00 0.04 0.09 0.08 0.02 0.02 0.11 0.00 0.05 0.13 0.36 0.11 0.15 0.00 0.04 0.00 0.05 0.08 0.00 0.07 0.03 0.06 0.07 0.02 0.00 0.00 0.05 0.03 0.05 0.05 0.06 0.06 0.03 0.00 0.02 0.05 0.04 0.02 0.00 0.10 K intron_retention Mkk4 chr3R - chr3R_4475142_4475199 chr3R_4475141_4475142;chr3R_4475199_4475200 chr3R_4475001_4475141;chr3R_4475200_4476041 0.00 0.00 0.00 2.25 0.00 0.00 0.00 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.91 1.23 2.38 0.00 0.00 1.72 4.17 0.00 3.28 0.00 0.00 0.00 0.00 2.86 0.00 1.12 0.94 1.00 4.17 1.68 0.00 0.00 0.00 2.67 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 2.15 1.56 K intron_retention CG5854,RI_chr3R_19760655_19760703 chr3R + chr3R_19760655_19760750 chr3R_19760654_19760655;chr3R_19760750_19760751 chr3R_19760555_19760654;chr3R_19760751_19760803 0.98 0.87 2.66 1.70 0.00 1.43 0.98 1.75 1.05 1.03 1.54 1.54 0.00 0.00 2.55 0.00 0.00 0.00 0.00 1.91 1.38 1.64 0.60 1.75 0.00 1.38 3.00 3.88 2.60 0.64 2.52 0.69 0.00 1.17 0.00 1.22 0.80 0.77 1.59 1.49 0.96 1.18 0.00 0.00 1.32 0.55 0.00 1.95 1.81 0.90 0.70 0.66 1.15 0.70 0.00 0.47 0.79 0.98 K intron_retention wts chr3R - chr3R_26617358_26617418 chr3R_26617357_26617358;chr3R_26617418_26617419 chr3R_26617162_26617357;chr3R_26617419_26617497 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 3.33 2.78 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention AnnIX,I_chr3R_16895383_16895999 chr3R + chr3R_16894742_16896445 chr3R_16894741_16894742;chr3R_16896445_16896446 chr3R_16894560_16894741;chr3R_16896446_16896495 7.46 5.76 7.41 4.48 3.59 6.60 6.53 4.88 5.28 13.33 6.71 11.41 22.73 7.95 6.90 10.58 6.15 5.10 6.05 11.37 5.39 9.17 8.55 8.16 13.38 6.35 9.03 21.43 9.33 7.32 9.45 9.32 8.75 7.11 10.27 15.65 4.08 6.52 6.98 15.48 10.12 5.08 7.84 7.11 3.43 7.67 5.44 13.33 7.71 5.76 6.93 8.00 15.97 7.46 8.47 6.58 7.02 18.75 K jcn_only_AD Dystrophin,noncoding_17759,I_chr3R_15289404_15290179 chr3R + chr3R_15289362_15290221;chr3R_15289437_15290221 chr3R_15289404_15290221 chr3R_15290222_15290279;chr3R_15289350_15289361 65.22 NA NA NA NA NA NA 69.57 NA NA NA 78.26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.87 NA NA NA NA NA NA NA NA NA K alternative_donor foi,I_chr3L_8524905_8524976 chr3L + chr3L_8521881_8523659 chr3L_8521898_8523659 chr3L_8523660_8524249;chr3L_8521860_8521880 17.35 NA 15.38 17.39 11.76 20.00 38.46 13.95 18.00 NA 17.24 24.24 NA 15.38 26.09 16.67 13.04 40.00 28.00 16.67 25.93 35.29 NA NA NA 11.11 NA NA 42.86 NA 17.54 13.33 9.52 18.18 NA NA NA NA NA NA NA 17.31 11.76 NA NA NA NA 18.52 18.60 NA NA NA NA NA 12.50 NA NA 15.79 N alternative_donor MB8.chr3R.pasa.66,alpha-Est10,I_chr3R_3314337_3319450 chr3R - chr3R_3314337_3317062 chr3R_3314337_3314410 chr3R_3314237_3314336;chr3R_3317063_3317412 12.50 11.11 11.11 20.00 0.00 10.00 23.53 12.50 10.71 5.88 NA 14.29 7.69 22.22 12.50 18.18 9.09 14.29 7.69 12.50 10.00 50.00 21.43 14.29 12.50 9.09 18.18 33.33 20.00 22.22 12.50 0.00 9.09 12.50 22.22 25.00 5.88 10.00 14.29 12.50 12.50 9.52 10.00 4.00 NA 6.67 0.00 14.29 25.00 10.00 12.50 9.09 33.33 NA 11.11 8.33 9.09 33.33 K alternative_acceptor msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585739_2586402;chr3L_2585716_2586402 chr3L_2585733_2586402 chr3L_2586403_2586502;chr3L_2585639_2585715 4.35 4.55 6.98 1.74 7.14 8.00 3.64 4.64 2.56 0.00 4.76 2.16 2.63 2.41 2.17 4.10 5.26 4.48 2.30 4.29 5.56 5.97 6.49 3.39 0.00 2.53 3.45 7.41 4.35 3.77 3.30 10.71 8.33 3.62 3.28 5.08 8.00 4.35 3.85 3.81 4.44 3.80 7.25 3.03 7.69 1.89 6.90 6.14 4.35 9.52 5.62 4.17 10.00 9.52 2.97 5.41 4.55 6.25 K intron_retention CG42354,CG42353 chrX - chrX_15989427_15989490 chrX_15989426_15989427;chrX_15989490_15989491 chrX_15989002_15989426;chrX_15989491_15989723 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 2.67 6.35 5.66 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32549,I_chrX_18286136_18286367,I_chrX_18286289_18286367,RI_chrX_18301919_18303082 chrX - chrX_18286000_18286072 chrX_18285999_18286000;chrX_18286072_18286073 chrX_18285031_18285999;chrX_18286073_18286135 0.00 0.00 0.00 0.76 0.00 0.00 1.30 0.00 1.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 1.66 0.85 0.00 0.00 0.00 0.74 2.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 1.16 0.73 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD mys,I_chrX_7958795_7961094 chrX + chrX_7955904_7957872;chrX_7955914_7957872;chrX_7955759_7957872;chrX_7956114_7957872;chrX_7955901_7957872;chrX_7956125_7957872;chrX_7955967_7957872 chrX_7955908_7957872 chrX_7957873_7958492;chrX_7955741_7955758 2.90 5.44 2.26 1.80 1.10 2.45 3.32 2.61 2.54 3.42 1.32 1.88 1.54 4.12 2.20 1.78 0.47 2.23 3.21 1.96 1.79 1.70 7.17 6.38 5.88 4.08 4.19 5.06 2.90 5.48 1.51 1.79 1.47 1.40 5.71 5.66 3.77 5.30 3.88 4.21 4.24 2.89 2.63 2.04 4.02 1.96 4.92 2.29 3.58 5.06 4.90 4.65 2.41 5.17 2.86 1.14 5.88 4.22 K alternative_donor CG3287,I_chr2R_2698891_2699406,I_chr2R_2700203_2700285 chr2R + chr2R_2698681_2699406;chr2R_2699349_2699406;chr2R_2698654_2699406 chr2R_2698891_2699406 chr2R_2699407_2699506;chr2R_2698533_2698653 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 1.33 0.00 0.00 0.00 0.00 0.00 1.45 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Hexo1,F_chr3L_4292778_4292830 chr3L + chr3L_4291051_4291112 chr3L_4291050_4291051;chr3L_4291112_4291113 chr3L_4289961_4291050;chr3L_4291113_4291211 100.00 97.44 100.00 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 K jcn_only_AD Ncc69,I_chr3L_12364701_12364860 chr3L - chr3L_12369216_12369549 chr3L_12369216_12369536 chr3L_12369101_12369215;chr3L_12369550_12369716 96.55 100.00 94.12 100.00 100.00 96.67 NA 96.15 95.56 NA 100.00 96.67 100.00 100.00 100.00 100.00 NA 96.67 96.67 97.33 100.00 NA 93.33 96.88 NA 95.00 96.15 NA NA 96.00 81.08 NA 97.67 97.92 96.15 95.24 100.00 95.35 92.00 95.92 NA 96.30 96.43 97.73 NA NA NA 94.00 91.67 92.00 96.15 NA 86.21 NA 93.02 100.00 NA 96.67 K intron_retention mbf1,RI_chr3L_16568077_16568816 chr3L + chr3L_16568077_16568286 chr3L_16568076_16568077;chr3L_16568286_16568287 chr3L_16567977_16568076;chr3L_16568287_16568447 5.09 4.26 4.63 5.09 4.79 5.77 8.15 5.47 6.36 3.21 5.56 7.59 7.59 9.32 6.35 5.84 6.61 5.34 7.65 3.72 4.69 22.30 4.77 4.77 5.08 9.60 6.69 4.87 8.53 4.82 4.52 4.33 5.45 4.78 5.37 5.52 5.34 4.57 5.18 4.17 4.37 6.14 5.76 6.00 3.36 2.83 3.28 2.94 4.01 5.66 5.57 4.59 2.52 3.85 6.90 4.42 3.12 1.78 K intron_retention CG17082,R_chr2R_642176_644740,I_chr2R_644094_644145,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_643765_643820 chr2R_643764_643765;chr2R_643820_643821 chr2R_643676_643764;chr2R_643821_644093 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 23.53 0.00 0.00 0.00 NA 0.00 0.00 9.09 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 K intron_retention px,RI_chr2R_18424832_18424969,I_chr2R_18442663_18442722,RI_chr2R_18448648_18449438,R_chr2R_18448676_18449403 chr2R - chr2R_18428483_18442722 chr2R_18428482_18428483;chr2R_18442722_18442723 chr2R_18428263_18428482;chr2R_18442723_18442822 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K alternative_donor mei-218,mei-217 chrX - chrX_17035515_17036834 chrX_17035515_17035726 chrX_17035359_17035514;chrX_17036835_17036969 100.00 100.00 87.50 87.50 83.33 100.00 100.00 88.89 100.00 100.00 100.00 92.31 100.00 100.00 100.00 85.71 100.00 85.71 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG1673 chrX + chrX_13294195_13294262 chrX_13294194_13294195;chrX_13294262_13294263 chrX_13294040_13294194;chrX_13294263_13295313 2.53 1.95 2.49 4.40 2.17 2.35 2.28 2.23 2.64 1.44 1.75 2.53 3.95 4.17 3.34 3.51 2.47 1.87 3.31 2.70 2.11 6.59 3.46 2.65 2.82 3.03 10.31 14.29 3.12 2.94 1.99 2.94 3.60 2.33 2.05 1.33 2.99 1.98 2.00 3.88 6.40 2.27 2.82 2.30 1.15 2.68 1.13 2.48 3.80 2.91 2.65 2.91 0.00 2.06 0.98 2.48 1.28 2.22 K intron_retention cdc2c,RI_chr3R_16562395_16562445 chr3R + chr3R_16562652_16562706 chr3R_16562651_16562652;chr3R_16562706_16562707 chr3R_16562454_16562651;chr3R_16562707_16562906 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.66 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.61 0.00 0.00 0.00 0.00 0.00 0.00 19.57 16.67 30.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 4.21 0.00 0.00 0.00 0.00 1.69 5.56 0.00 0.00 0.00 K intron_retention cbt,I_chr2L_478205_479086 chr2L - chr2L_478205_479406 chr2L_478204_478205;chr2L_479406_479407 chr2L_478105_478204;chr2L_479407_479935 8.42 12.96 7.84 8.86 5.26 9.52 7.89 14.29 7.52 9.68 4.62 12.09 9.21 5.77 15.15 11.11 10.26 10.81 9.38 6.57 10.00 4.62 6.56 8.33 6.00 12.50 11.27 20.37 14.04 10.61 12.73 11.63 8.16 13.68 6.90 7.02 4.08 0.00 10.42 9.46 6.02 8.42 5.00 10.53 3.57 12.66 7.41 15.31 8.73 6.15 2.67 4.26 4.29 3.92 12.33 3.92 2.70 5.67 K alternative_donor CG4365 chr3L + chr3L_20792089_20792242;chr3L_20791819_20792242;chr3L_20792100_20792242;chr3L_20792077_20792242 chr3L_20791960_20792242 chr3L_20792243_20793181;chr3L_20791802_20791818 0.00 0.00 0.00 6.45 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14184,I_chr3L_20021160_20021210,I_chr3L_20021910_20021979 chr3L - chr3L_20021286_20021344 chr3L_20021285_20021286;chr3L_20021344_20021345 chr3L_20021215_20021285;chr3L_20021345_20021478 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 4.76 16.07 0.00 0.00 10.20 0.00 1.37 0.00 0.00 0.00 0.00 5.66 0.00 0.00 2.13 0.00 11.76 1.55 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 1.82 0.00 0.00 0.00 2.15 0.00 K intron_retention RhoGAP5A,C_chrX_5514320_5515557 chrX - chrX_5511820_5511890 chrX_5511819_5511820;chrX_5511890_5511891 chrX_5511342_5511819;chrX_5511891_5512513 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 3.70 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG10338,I_chr2L_18697359_18697402 chr2L + chr2L_18697359_18697420 chr2L_18697359_18697402 chr2L_18697259_18697358;chr2L_18697421_18697502 0.00 NA 0.00 4.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 K alternative_donor CG17078 chr2L - chr2L_276904_276973 chr2L_276904_276958 chr2L_276739_276903;chr2L_276974_277212 88.89 92.86 85.71 91.67 83.33 91.67 86.67 82.35 88.57 NA 86.67 95.24 91.67 90.91 88.89 91.67 92.31 91.67 91.67 80.56 88.89 83.33 80.95 84.21 88.89 90.91 88.89 76.92 93.33 93.75 100.00 83.33 82.76 88.24 78.57 83.33 90.48 87.50 86.67 84.62 91.67 95.45 100.00 94.44 95.00 92.31 NA 96.30 86.36 100.00 76.47 88.89 85.71 NA 100.00 80.00 100.00 95.83 K alternative_acceptor RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817 chr2R + chr2R_15330246_15330305;chr2R_15330246_15330292 chr2R_15330246_15330317 chr2R_15330177_15330245;chr2R_15330318_15330383 0.00 0.00 0.04 0.00 0.05 0.00 0.00 0.03 0.00 0.06 0.00 0.00 0.00 0.00 0.03 0.00 0.06 0.00 0.05 0.02 0.04 0.00 0.02 0.02 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.03 0.04 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.03 0.00 0.02 0.02 0.00 0.00 0.02 0.00 K intron_retention CG6073 chr3R - chr3R_22013997_22014053 chr3R_22013996_22013997;chr3R_22014053_22014054 chr3R_22013493_22013996;chr3R_22014054_22014241 0.00 NA 0.00 6.25 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 2.60 K intron_retention Elp3 chr2L + chr2L_4444833_4444894 chr2L_4444832_4444833;chr2L_4444894_4444895 chr2L_4444769_4444832;chr2L_4444895_4444963 42.14 45.45 37.04 18.18 44.00 50.00 33.33 44.00 40.96 36.84 43.59 42.59 46.67 56.25 43.59 67.31 50.00 44.12 62.16 34.67 50.00 20.00 24.44 38.46 40.00 36.36 48.28 NA 50.00 33.33 64.10 40.00 41.18 63.83 47.83 33.33 42.42 44.00 41.86 40.91 36.84 41.10 50.00 62.07 41.38 45.16 38.46 52.00 46.38 29.41 39.47 29.17 20.83 35.71 48.48 47.06 20.93 19.61 K intron_retention Vha100-1,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24958025_24958097 chr3R_24958024_24958025;chr3R_24958097_24958098 chr3R_24957848_24958024;chr3R_24958098_24958226 0.00 0.00 0.00 4.71 0.00 0.00 1.94 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.93 0.00 0.00 0.00 K alternative_acceptor CG42248,I_chrX_705402_712468 chrX - chrX_713860_714537 chrX_714112_714537 chrX_714538_716002;chrX_713726_713859 6.67 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 35.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG7200,RI_chr2L_18157864_18158015 chr2L - chr2L_18157864_18158015 chr2L_18157864_18157917 chr2L_18157764_18157863;chr2L_18158016_18158115 89.25 NA 90.00 89.36 NA 90.48 84.00 88.46 92.86 NA NA 89.66 100.00 NA 90.91 85.71 NA 95.65 78.26 89.13 NA NA NA 81.82 NA 80.77 NA NA 80.00 NA 84.00 90.00 92.31 86.67 NA NA NA NA NA 86.96 NA 89.74 NA 81.82 90.91 83.87 100.00 88.89 94.12 75.00 NA NA NA 87.50 92.86 78.26 95.24 95.24 K intron_retention ImpL3 chr3L - chr3L_6253011_6253080 chr3L_6253010_6253011;chr3L_6253080_6253081 chr3L_6252539_6253010;chr3L_6253081_6253536 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Pak,RI_chr3R_2181143_2181934 chr3R + chr3R_2181143_2182154 chr3R_2181143_2181934 chr3R_2181043_2181142;chr3R_2182155_2182320 0.82 0.00 0.00 0.00 0.00 0.00 1.16 0.65 0.00 0.89 1.33 0.54 0.00 1.04 0.82 0.82 0.00 1.20 0.00 0.89 0.00 4.52 1.01 0.55 0.84 1.83 1.06 1.68 0.00 0.77 0.00 0.00 0.74 1.38 2.33 0.00 1.03 1.36 0.00 2.30 0.00 0.44 0.00 1.75 0.00 0.82 0.00 2.19 1.14 1.28 1.20 2.13 1.03 0.95 1.34 0.00 0.00 0.77 K intron_retention CG5630 chr3R + chr3R_16752700_16752909 chr3R_16752699_16752700;chr3R_16752909_16752910 chr3R_16752493_16752699;chr3R_16752910_16753188 0.52 0.00 0.00 7.25 0.00 0.00 1.82 0.76 1.71 0.00 2.47 2.01 2.97 0.00 0.75 0.00 0.00 0.00 0.00 0.90 1.10 1.39 2.38 1.59 0.00 0.00 2.33 2.00 2.50 0.00 0.00 0.00 0.00 0.76 0.00 1.56 0.94 0.61 0.71 0.00 0.00 0.41 2.11 1.23 0.00 0.86 0.70 0.00 0.00 1.07 0.00 2.20 0.52 0.00 0.00 0.00 0.29 0.67 K intron_retention CG3308,I_chr3R_17098558_17099131,I_chr3R_17099005_17099062 chr3R - chr3R_17098558_17099062 chr3R_17098557_17098558;chr3R_17099062_17099063 chr3R_17098458_17098557;chr3R_17099063_17099162 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG11148,RI_chr4_886921_887162 chr4 - chr4_886921_887601;chr4_886921_887162;chr4_886921_887595 chr4_886921_887591 chr4_886821_886920;chr4_887602_887637 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA 0.00 N multi_cassette CG1674,I_chr4_253475_257020,F_chr4_258186_259747,F_chr4_259865_260939,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_254972_260939 chr4_254972_255489;chr4_255571_257020;chr4_257102_257894;chr4_258186_260939 chr4_255490_255570;chr4_257021_257101;chr4_257895_258185 chr4_254893_254971;chr4_260940_261024 100.00 100.00 100.00 53.33 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention mtm chr2L - chr2L_6035223_6035277 chr2L_6035222_6035223;chr2L_6035277_6035278 chr2L_6034715_6035222;chr2L_6035278_6036984 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 1.15 0.00 0.00 1.30 0.00 0.00 0.00 1.23 2.06 2.30 1.11 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.49 0.00 0.00 1.06 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2388436;chrX_2388671_2389073;chrX_2389272_2390808;chrX_2390959_2391350;chrX_2391522_2393243 chrX_2388437_2388670;chrX_2389074_2389271;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2393244_2393291 16.67 NA NA NA NA NA NA NA 16.67 NA NA 10.00 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 11.11 NA NA 12.50 NA 20.00 NA 28.57 NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA K intron_retention pr,I_chr2L_20074851_20075383 chr2L - chr2L_20074129_20074190 chr2L_20074128_20074129;chr2L_20074190_20074191 chr2L_20073669_20074128;chr2L_20074191_20074336 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 1.61 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 K intron_retention CG15547,I_chr3R_26712627_26714606,RI_chr3R_26713323_26714382 chr3R - chr3R_26708650_26708704 chr3R_26708649_26708650;chr3R_26708704_26708705 chr3R_26707547_26708649;chr3R_26708705_26708793 0.00 6.45 0.00 1.22 3.45 0.00 3.28 5.13 6.67 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 2.94 2.35 0.00 0.00 0.00 0.00 0.00 NA 20.00 0.00 0.00 0.00 0.00 1.64 0.00 3.28 0.00 0.00 4.35 0.00 0.00 0.00 0.00 2.44 NA 0.00 0.00 0.00 0.00 4.35 3.70 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 K intron_retention CG15611,I_chr2R_12996782_13000822 chr2R + chr2R_12996782_12997447 chr2R_12996781_12996782;chr2R_12997447_12997448 chr2R_12996682_12996781;chr2R_12997448_12997579 0.00 0.00 0.00 5.13 0.00 0.00 12.90 0.00 7.41 NA 0.00 6.52 5.26 3.85 7.32 0.00 0.00 5.56 0.00 6.45 0.00 0.00 0.00 0.00 NA 0.00 0.00 6.25 0.00 0.00 0.00 NA 4.76 6.82 0.00 0.00 0.00 0.00 4.00 4.88 0.00 5.00 8.70 2.70 0.00 0.00 0.00 5.26 3.17 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K jcn_only_AD CG17883,I_chr2R_560147_560511,I_chr2R_560547_560618 chr2R + chr2R_560547_560618;chr2R_560147_560618;chr2R_560565_560618 chr2R_560568_560618 chr2R_560619_560642;chr2R_560047_560146 61.02 70.00 50.00 NA 68.00 64.29 79.35 65.15 60.71 NA 42.86 64.71 69.05 55.56 60.00 57.69 55.56 57.69 60.53 61.18 70.00 66.67 56.25 64.29 45.45 NA 40.00 61.90 NA 70.00 50.00 80.00 56.52 59.46 62.50 NA NA NA 72.00 63.41 NA 76.00 55.56 59.09 71.43 52.50 65.62 NA 60.87 46.15 57.69 56.00 70.97 56.67 47.06 64.10 73.47 61.70 K intron_retention CG3731,E_chr3R_10716521_10717949,E_chr3R_10717341_10717506 chr3R + chr3R_10717599_10717672 chr3R_10717598_10717599;chr3R_10717672_10717673 chr3R_10717507_10717598;chr3R_10717673_10718125 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.74 1.12 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Mgat2,I_chr3R_25842597_25842859,I_chr3R_25845406_25846373 chr3R - chr3R_25842597_25843346 chr3R_25842596_25842597;chr3R_25843346_25843347 chr3R_25842497_25842596;chr3R_25843347_25843409 31.73 NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA 25.00 NA NA NA 19.05 NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 38.46 NA NA 53.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD faf,RI_chr3R_27603474_27603893,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27613446_27613523 chr3R_27613461_27613523 chr3R_27613524_27613919;chr3R_27612869_27613445 90.97 91.25 93.51 86.55 88.52 90.97 92.34 90.84 92.58 90.79 91.67 91.84 92.31 90.67 92.07 88.14 90.09 94.01 91.49 91.11 91.72 93.98 90.48 92.83 86.51 91.79 87.68 86.11 86.52 86.71 88.74 93.39 90.42 94.96 93.20 78.49 92.82 93.75 91.43 89.47 86.67 91.67 88.11 91.53 88.94 87.34 90.87 82.46 90.18 93.79 93.09 89.09 93.91 91.18 89.60 89.13 91.11 84.18 K intron_retention Smr,C_chrX_12580865_12625568,E_chrX_12583695_12584523 chrX - chrX_12584072_12584124 chrX_12584071_12584072;chrX_12584124_12584125 chrX_12583324_12584071;chrX_12584125_12584261 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.35 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.37 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.65 0.00 2.30 0.00 0.00 0.00 0.00 1.16 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Aats-asn chr2L - chr2L_19131686_19131796 chr2L_19131685_19131686;chr2L_19131796_19131797 chr2L_19129400_19131685;chr2L_19131797_19131986 1.77 0.00 1.10 0.67 1.01 0.70 1.64 1.94 1.84 0.00 1.88 2.20 1.73 1.99 2.05 0.96 2.06 2.23 0.93 1.43 0.70 0.00 1.64 2.49 1.72 1.20 3.15 2.53 1.23 3.31 2.43 0.56 1.71 1.55 1.69 1.80 2.56 2.04 2.81 2.63 1.57 1.77 2.26 0.00 2.17 2.53 2.11 2.86 1.93 2.69 2.05 1.69 2.34 1.27 1.79 1.65 0.87 0.00 K alternative_donor RpL31,CG1827 chr2R + chr2R_5474844_5474951;chr2R_5474789_5474951 chr2R_5474734_5474951 chr2R_5474952_5475211;chr2R_5474727_5474733 97.58 97.83 97.55 99.11 98.53 97.09 92.21 97.93 97.51 98.22 97.55 96.34 96.15 93.98 99.05 95.45 98.35 96.91 98.05 98.31 97.37 99.31 97.33 98.26 98.74 98.28 87.10 97.58 95.53 98.03 94.91 98.64 99.34 98.66 97.41 94.50 97.21 97.22 97.04 99.48 97.14 99.24 98.31 97.83 99.32 96.06 95.74 98.81 97.88 98.90 95.00 97.34 98.59 87.80 99.24 95.19 96.51 98.93 K intron_retention RI_chrX_1796525_1796585,mip130,Rbcn-3B,I_chrX_1820956_1821011 chrX + chrX_1803484_1804673 chrX_1803483_1803484;chrX_1804673_1804674 chrX_1802912_1803483;chrX_1804674_1810858 0.00 0.00 4.55 7.41 0.00 0.00 3.70 3.70 4.65 0.00 15.38 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 11.63 2.13 0.00 NA 0.00 0.00 10.81 0.00 0.00 0.00 NA 0.00 4.88 0.00 0.00 5.26 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 NA 6.25 0.00 0.00 NA 3.85 NA NA 0.00 K cassette tan,R_chr3L_6048520_6048578,R_chr3L_6048608_6048676 chr3L + chr3L_6048520_6048816 chr3L_6048520_6048676;chr3L_6048764_6048816 chr3L_6048677_6048763 chr3L_6048508_6048519;chr3L_6048817_6048925 100.00 90.91 92.86 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 93.75 93.75 100.00 100.00 92.31 94.12 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 90.91 93.75 100.00 88.89 100.00 100.00 100.00 94.12 100.00 93.33 100.00 100.00 100.00 93.75 92.86 100.00 93.33 92.86 93.75 100.00 100.00 94.44 100.00 87.50 100.00 100.00 88.89 100.00 100.00 K jcn_only_AA I_chrX_3345099_3416710,CG10803,I_chrX_3380218_3380345 chrX + chrX_3380055_3380345;chrX_3380055_3380115 chrX_3380055_3380351 chrX_3379703_3380054 4.08 NA 3.85 4.55 NA NA 3.85 4.88 6.06 NA 4.76 2.38 NA NA NA 9.68 NA NA NA 0.00 NA NA 6.90 NA NA NA 4.35 NA NA NA NA NA 2.44 3.45 4.17 NA NA 0.00 NA 5.88 NA 0.00 NA 9.09 NA NA NA 2.86 4.00 NA NA NA NA NA NA NA NA NA K intron_retention tou,I_chr2R_7468394_7468453,RI_chr2R_7474644_7475275,I_chr2R_7479681_7491857,I_chr2R_7504956_7505020 chr2R - chr2R_7468394_7468453 chr2R_7468393_7468394;chr2R_7468453_7468454 chr2R_7468294_7468393;chr2R_7468454_7468553 96.30 96.77 96.67 100.00 96.30 94.29 93.75 84.00 91.84 98.31 100.00 95.92 92.86 100.00 95.65 94.12 100.00 100.00 90.00 96.23 100.00 95.35 94.34 98.18 97.44 95.83 90.24 98.21 96.67 98.92 100.00 97.44 96.83 89.29 96.61 93.94 95.77 97.44 96.49 98.10 94.59 93.44 94.12 90.70 96.55 99.30 93.62 98.22 97.78 97.22 88.14 92.86 92.50 89.47 96.97 90.91 85.71 98.32 K intron_retention YT521-B chr3L - chr3L_3373870_3374018 chr3L_3373869_3373870;chr3L_3374018_3374019 chr3L_3372970_3373869;chr3L_3374019_3374207 3.64 0.00 0.00 8.70 6.06 0.00 8.51 7.27 4.62 0.00 0.00 0.00 3.85 2.27 3.28 3.85 0.00 0.00 4.65 3.85 0.00 18.18 4.65 3.64 1.75 1.92 18.18 34.62 8.00 4.08 1.12 3.51 8.16 0.00 4.62 4.84 4.88 3.51 2.38 3.45 5.56 0.00 0.00 5.71 1.69 3.39 3.57 4.48 4.00 3.92 5.88 2.70 1.85 3.45 0.00 3.77 3.85 4.44 K jcn_only_AD EI_chrX_20347839_20348139,DMG4-MB6.chrX.37.001,RI_chrX_20380495_20381649 chrX - chrX_20380495_20381649 chrX_20380495_20381545 chrX_20380395_20380494;chrX_20381650_20381671 89.72 NA NA 96.00 NA NA NA 96.00 82.14 NA NA 93.33 NA NA NA 82.61 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.88 NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA 86.11 NA NA NA NA NA NA NA NA NA K jcn_only_AD caz,noncoding_24110,RI_chrX_16183147_16183258,RI_chrX_16183356_16185973 chrX + chrX_16183147_16183258 chrX_16183192_16183258 chrX_16183259_16183355;chrX_16183060_16183146 99.12 98.42 97.30 95.82 98.78 100.00 98.74 98.44 98.67 99.12 96.64 98.91 99.06 99.43 97.64 100.00 100.00 99.46 100.00 99.21 97.69 100.00 99.59 98.80 98.87 99.19 97.85 96.17 97.48 98.94 99.71 99.14 99.04 99.13 100.00 98.10 99.31 99.53 98.99 99.18 100.00 99.14 99.30 99.63 99.13 98.88 99.69 100.00 99.77 98.65 98.50 98.54 99.63 99.67 99.12 98.40 98.44 99.45 K intron_retention CG15602 chrX + chrX_15694071_15694128 chrX_15694070_15694071;chrX_15694128_15694129 chrX_15694002_15694070;chrX_15694129_15694197 0.00 0.00 0.00 4.35 0.00 0.00 4.55 0.00 2.17 NA 0.00 3.70 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 NA 0.00 0.00 2.94 0.00 0.00 0.00 2.94 0.00 0.00 0.00 1.92 0.00 0.00 3.03 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG2211,CG2199,RI_chr3L_1345162_1345493 chr3L - chr3L_1334973_1335040 chr3L_1334972_1334973;chr3L_1335040_1335041 chr3L_1334877_1334972;chr3L_1335041_1335288 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.94 100.00 100.00 100.00 99.17 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG31038,I_chr3R_25702915_25703648,I_chr3R_25705533_25722419,I_chr3R_25727788_25727905 chr3R + chr3R_25702915_25703648;chr3R_25702989_25703648;chr3R_25702897_25703648;chr3R_25702901_25703648;chr3R_25702838_25703648;chr3R_25702970_25703648 chr3R_25702895_25703648 chr3R_25703649_25703748;chr3R_25702831_25702837 0.00 0.00 0.00 16.67 NA 0.00 11.11 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 7.69 NA 0.00 0.00 3.45 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor heix,I_chr2L_16298194_16298401 chr2L - chr2L_16298194_16298871 chr2L_16298194_16298401 chr2L_16298094_16298193;chr2L_16298872_16298888 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14767,RI_chr2R_4610372_4610761 chr2R - chr2R_4607290_4607359 chr2R_4607289_4607290;chr2R_4607359_4607360 chr2R_4607151_4607289;chr2R_4607360_4607537 12.86 13.01 9.77 10.61 8.40 7.47 7.91 9.33 7.72 21.05 10.53 8.70 12.17 9.49 7.22 10.65 4.72 11.32 11.97 7.80 8.94 20.19 16.24 16.13 14.47 10.74 13.81 18.09 19.89 19.75 10.67 11.32 15.87 10.61 17.27 12.05 16.86 17.02 11.71 24.00 16.67 9.03 9.01 26.85 15.29 17.93 19.29 16.31 8.99 17.69 17.06 13.39 15.22 12.86 7.87 14.77 14.47 15.61 K intron_retention par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350905_15351814 chr2R_15350904_15350905;chr2R_15351814_15351815 chr2R_15350805_15350904;chr2R_15351815_15351914 93.65 NA NA 100.00 NA NA NA 100.00 92.86 NA NA 87.50 NA NA NA 92.31 NA NA NA 94.44 NA NA NA NA NA 81.82 NA NA NA NA 100.00 NA NA 92.31 NA 100.00 NA NA NA NA NA 92.31 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention kuz,E_chr2L_13550294_13551106,CE_chr2L_13558833_13594255,I_chr2L_13636762_13637287 chr2L + chr2L_13635591_13635648 chr2L_13635590_13635591;chr2L_13635648_13635649 chr2L_13634544_13635590;chr2L_13635649_13636001 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563485_567573;chr3R_563503_567573 chr3R_563461_567573 chr3R_567574_568885;chr3R_563195_563460 28.98 23.81 26.19 10.53 28.21 39.13 51.43 35.71 27.55 NA 50.00 34.67 15.91 26.09 25.53 20.00 31.25 25.71 25.71 28.92 31.43 32.00 36.00 25.64 NA 13.04 23.26 25.00 33.33 20.00 14.00 NA 39.62 31.43 26.09 30.43 39.53 14.81 40.54 29.85 33.33 24.68 33.33 37.50 29.03 15.56 59.38 19.35 35.00 29.03 38.89 22.22 NA NA 17.50 23.26 48.15 37.50 K intron_retention dorsal,RI_chr2L_17438018_17439189,FI_chr2L_17449369_17450215,noncoding_3500,RI_chr2L_17450002_17450219 chr2L - chr2L_17449369_17450219 chr2L_17449368_17449369;chr2L_17450219_17450220 chr2L_17449296_17449368;chr2L_17450220_17450306 8.05 0.00 11.11 10.61 0.00 3.85 13.56 10.26 6.02 10.71 5.71 9.35 5.71 15.56 8.47 12.61 11.11 5.26 15.22 5.10 5.00 1.75 10.61 14.29 10.71 15.62 25.00 14.29 11.43 5.97 8.42 6.06 9.64 11.11 0.00 8.51 11.76 0.00 6.90 8.99 6.85 8.05 15.62 11.36 5.13 5.49 8.00 5.03 11.88 5.56 6.90 4.44 0.00 4.76 3.17 6.52 15.79 3.31 K jcn_only_AA CG30122,I_chr2R_14526123_14526189 chr2R - chr2R_14520489_14520558 chr2R_14520492_14520558 chr2R_14520559_14520629;chr2R_14519851_14520488 87.23 88.05 94.79 89.05 85.14 87.83 86.99 88.11 89.28 87.23 85.37 87.59 83.91 86.49 84.62 92.31 88.07 78.26 85.37 87.91 88.71 86.56 89.38 91.21 91.89 92.08 87.38 88.48 85.07 86.04 82.93 84.80 84.98 89.47 86.71 84.92 88.48 84.38 87.37 84.37 89.34 87.36 83.81 86.67 85.50 90.54 86.43 87.06 89.43 87.75 86.60 84.71 84.88 88.64 87.93 87.24 85.84 85.37 K intron_retention CG15098,I_chr2R_14721883_14721980 chr2R - chr2R_14721902_14721983 chr2R_14721901_14721902;chr2R_14721983_14721984 chr2R_14721834_14721901;chr2R_14721984_14722049 82.21 NA NA NA NA NA NA 75.00 66.67 NA 66.67 87.50 NA NA 88.89 NA NA NA NA NA NA 87.50 NA NA NA NA 88.89 95.24 NA NA 87.50 NA NA 63.64 NA NA NA NA NA NA NA 76.92 NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA K intron_retention Med,CG1792 chr3R + chr3R_27439597_27439656 chr3R_27439596_27439597;chr3R_27439656_27439657 chr3R_27438982_27439596;chr3R_27439657_27439939 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 0.00 0.00 2.56 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG16965,dgt2,escl chr2L + chr2L_11990256_11990312 chr2L_11990255_11990256;chr2L_11990312_11990313 chr2L_11989954_11990255;chr2L_11990313_11990848 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 2.25 0.00 0.00 0.00 3.70 3.42 0.00 0.00 0.00 1.34 0.00 0.00 2.86 0.00 0.00 2.60 0.87 0.00 0.00 0.00 1.47 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG30035 chr2R + chr2R_7561681_7561748 chr2R_7561680_7561681;chr2R_7561748_7561749 chr2R_7561395_7561680;chr2R_7561749_7562266 0.00 0.00 NA 0.00 0.00 NA 5.88 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA NA NA 0.00 NA 29.41 NA NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA K alternative_donor Nup154,I_chr2L_11009331_11009442,I_chr2L_11011380_11011453 chr2L + chr2L_11009331_11009442 chr2L_11009378_11009442 chr2L_11009443_11009542;chr2L_11009231_11009330 97.87 97.92 92.16 98.78 94.87 100.00 98.55 98.77 98.97 100.00 97.22 95.00 95.35 97.22 97.96 95.45 97.73 95.45 98.08 98.11 97.37 97.87 95.00 98.31 95.12 98.15 98.18 100.00 80.39 98.33 98.00 98.46 98.90 97.80 94.12 100.00 90.48 97.14 98.04 96.10 98.53 97.67 95.00 98.04 98.53 99.06 93.55 97.80 97.94 97.01 98.48 100.00 88.24 88.64 96.83 95.65 96.49 99.07 K cassette tai,I_chr2L_9191814_9206231 chr2L + chr2L_9243901_9245385 chr2L_9243901_9244262;chr2L_9244587_9245385 chr2L_9244263_9244586 chr2L_9243648_9243900;chr2L_9245386_9245712 24.72 24.05 41.38 23.68 24.24 20.93 17.31 5.17 20.00 34.57 15.79 22.22 8.57 18.18 17.54 22.58 44.44 24.00 19.44 9.60 21.88 24.00 37.24 34.26 31.82 12.82 28.04 21.88 31.82 26.55 23.26 39.66 31.62 19.23 24.72 26.03 33.87 31.82 26.67 19.51 28.79 19.71 27.59 30.30 27.50 25.56 25.27 30.15 21.15 47.37 22.94 30.19 31.94 23.81 15.22 31.34 30.56 32.89 K alternative_donor EloA chr3R + chr3R_19080028_19080090 chr3R_19080032_19080090 chr3R_19080091_19080790;chr3R_19079740_19080027 100.00 96.43 100.00 100.00 100.00 100.00 100.00 96.55 97.50 100.00 100.00 100.00 100.00 100.00 96.43 100.00 93.33 100.00 100.00 100.00 100.00 96.55 100.00 100.00 97.22 100.00 100.00 97.06 100.00 100.00 100.00 100.00 96.30 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 97.92 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 N cassette CG11873,I_chr3R_24900749_24922953 chr3R + chr3R_24890335_24922953 chr3R_24890335_24900684;chr3R_24900749_24922953 chr3R_24900685_24900748 chr3R_24889554_24890334;chr3R_24922954_24923053 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 11.11 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K jcn_only_AA Axn,I_chr3R_25849563_25849626 chr3R + chr3R_25859466_25859544 chr3R_25859466_25859526 chr3R_25859321_25859465;chr3R_25859545_25859847 46.48 44.16 51.72 51.92 38.00 41.33 58.11 57.29 40.57 24.14 58.18 47.33 51.52 56.45 50.70 46.15 47.62 46.67 53.85 50.64 48.21 42.19 39.84 42.59 28.57 25.45 54.64 55.17 45.45 46.48 37.21 49.15 39.74 41.84 41.43 55.07 45.65 58.23 43.33 42.77 34.55 48.15 44.07 38.55 49.25 46.75 37.21 46.05 59.26 46.43 55.88 55.00 52.63 46.77 34.67 43.86 47.27 34.72 K cassette spz chr3R - chr3R_22892388_22894865;chr3R_22892922_22894865 chr3R_22892922_22893079,chr3R_22892388_22893079;chr3R_22893218_22894865 chr3R_22893080_22893217 chr3R_22892330_22892387;chr3R_22894866_22895053 33.74 33.33 44.86 16.82 31.87 30.67 27.20 29.50 30.42 34.55 44.63 28.68 42.29 35.80 36.51 42.08 38.51 36.94 37.84 37.91 39.06 30.95 29.65 26.67 31.75 36.59 30.26 27.03 21.82 36.84 34.46 35.71 36.06 38.71 41.94 15.20 27.27 31.58 29.95 47.13 39.67 33.15 38.46 39.22 21.17 33.74 32.22 37.39 36.65 35.43 34.36 29.41 21.34 31.91 38.50 31.69 24.51 30.65 K alternative_donor Mnf,RI_chr3L_11108913_11109028 chr3L - chr3L_11111166_11112264;chr3L_11111166_11113709 chr3L_11111166_11113381 chr3L_11110405_11111165;chr3L_11113710_11113829 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD iPLA2-VIA chr3L - chr3L_9856717_9856876;chr3L_9856717_9857106 chr3L_9856717_9857292 chr3L_9856421_9856716;chr3L_9857293_9857459 91.47 98.18 97.26 89.92 97.30 95.74 96.85 95.65 90.48 NA 86.54 88.71 97.92 93.59 90.41 88.17 94.83 97.14 96.92 92.86 86.30 87.97 89.52 89.33 85.29 88.24 86.89 88.52 86.25 88.14 91.95 96.43 88.76 92.62 86.42 96.00 90.00 92.42 90.54 96.55 94.87 91.38 96.15 93.83 78.12 90.00 85.71 93.18 92.50 86.00 87.25 91.55 97.50 89.66 92.31 91.84 96.23 90.24 K jcn_only_AA meso18E,I_chrX_19601491_19601568 chrX - chrX_19601491_19601568 chrX_19601498_19601568 chrX_19601569_19601635;chrX_19601429_19601490 100.00 100.00 100.00 100.00 100.00 99.35 100.00 99.51 99.70 99.30 100.00 100.00 100.00 99.11 100.00 100.00 100.00 98.44 100.00 100.00 100.00 99.53 100.00 100.00 100.00 100.00 100.00 98.60 100.00 99.69 100.00 100.00 99.80 100.00 100.00 99.39 99.74 100.00 99.75 99.55 99.64 99.61 100.00 100.00 99.71 99.09 99.60 99.38 100.00 100.00 99.31 99.22 100.00 100.00 99.36 99.54 99.67 99.76 K intron_retention Taf13,mRpS18B chr2L - chr2L_20093247_20093317 chr2L_20093246_20093247;chr2L_20093317_20093318 chr2L_20093014_20093246;chr2L_20093318_20093660 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6838,I_chr3L_22709306_22709668 chr3L - chr3L_22710181_22710293 chr3L_22710180_22710181;chr3L_22710293_22710294 chr3L_22710071_22710180;chr3L_22710294_22710303 86.57 86.54 85.45 75.00 90.24 88.33 96.20 86.87 84.82 82.22 85.11 89.19 81.03 82.00 88.57 86.30 80.43 80.39 86.57 88.79 85.71 77.94 86.36 82.61 88.89 93.59 95.24 95.24 91.67 84.91 91.18 93.44 94.26 84.78 84.78 95.00 73.44 85.71 83.91 80.77 96.10 85.47 91.67 88.24 93.75 98.75 92.16 95.24 92.37 87.30 88.14 84.44 81.25 97.62 83.12 75.51 86.57 93.60 K alternative_donor Pax,RI_chr2L_19404683_19426205,RI_chr2L_19404823_19409403,I_chr2L_19419985_19423267,I_chr2L_19419985_19423278,I_chr2L_19419985_19423414,I_chr2L_19420081_19423267,I_chr2L_19420081_19423278 chr2L - chr2L_19420192_19423267;chr2L_19420192_19423278 chr2L_19420192_19423414 chr2L_19420186_19420191;chr2L_19423415_19423487 25.00 50.00 0.00 25.00 NA 37.50 9.09 14.29 40.00 NA NA 46.67 NA NA 33.33 46.15 NA NA 16.67 33.33 NA 40.00 40.00 20.00 NA NA NA 16.67 NA 41.67 14.29 NA 16.67 23.08 22.22 16.67 NA 25.00 NA 26.67 NA 14.29 NA 20.00 NA 37.50 50.00 25.00 40.00 NA 57.14 NA NA NA 16.67 20.00 NA 20.00 K intron_retention nes chr3L - chr3L_19253331_19253648 chr3L_19253330_19253331;chr3L_19253648_19253649 chr3L_19253215_19253330;chr3L_19253649_19253699 67.55 72.73 66.67 71.43 71.43 56.25 55.56 69.57 65.00 57.14 NA 76.19 70.00 62.50 64.71 68.42 90.00 80.00 75.00 66.67 NA 50.00 66.67 78.95 75.00 84.62 70.00 63.64 57.14 NA 64.29 NA 63.64 71.43 66.67 83.33 50.00 63.64 76.47 66.67 NA 82.61 NA 81.82 66.67 60.00 NA 76.92 77.78 NA 70.00 70.59 NA NA 57.89 64.29 53.33 NA K alternative_donor fh,RI_chrX_9042659_9042723 chrX - chrX_9042659_9042727 chrX_9042659_9042723 chrX_9042559_9042658;chrX_9042728_9042823 1.75 2.27 2.33 6.90 3.85 3.03 0.00 3.57 3.51 0.00 0.00 0.00 0.00 4.17 2.70 4.35 0.00 0.00 0.00 1.37 0.00 0.00 2.38 1.72 5.26 15.38 0.00 5.56 8.82 2.94 3.23 0.00 0.00 6.25 0.00 0.00 1.54 2.13 1.67 2.00 8.82 1.75 0.00 2.70 2.94 2.17 0.00 0.00 0.00 0.00 3.45 0.00 2.17 5.26 0.00 0.00 0.00 8.33 K intron_retention Sox14 chr2R + chr2R_19868269_19871066 chr2R_19868268_19868269;chr2R_19871066_19871067 chr2R_19867418_19868268;chr2R_19871067_19871533 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 NA NA 0.00 NA 0.00 12.50 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.35 0.00 9.09 8.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rad23,RI_chr4_328916_330164 chr4 + chr4_329201_329274 chr4_329200_329201;chr4_329274_329275 chr4_329057_329200;chr4_329275_329705 100.00 100.00 100.00 100.00 100.00 100.00 97.39 99.22 100.00 95.83 100.00 100.00 98.28 98.51 100.00 100.00 98.46 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 98.46 100.00 100.00 100.00 97.44 98.53 100.00 97.62 99.12 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.33 97.96 100.00 100.00 K intron_retention CG31064,RI_chr3R_23056388_23064246,I_chr3R_23069667_23070365 chr3R - chr3R_23058598_23058656 chr3R_23058597_23058598;chr3R_23058656_23058657 chr3R_23058195_23058597;chr3R_23058657_23058907 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 K intron_retention CG42537,TfIIFalpha,I_chr3R_2211939_2212057 chr3R + chr3R_2203627_2203687 chr3R_2203626_2203627;chr3R_2203687_2203688 chr3R_2203519_2203626;chr3R_2203688_2203901 100.00 100.00 NA NA NA NA 100.00 100.00 94.74 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 88.89 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 92.31 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 NA 94.44 NA 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 K cassette Eps-15,I_chr2R_20660319_20660496 chr2R - chr2R_20660319_20660734 chr2R_20660319_20660463;chr2R_20660527_20660734 chr2R_20660464_20660526 chr2R_20660219_20660318;chr2R_20660735_20660822 86.54 83.53 87.32 65.32 87.93 87.72 50.00 86.73 86.45 90.57 92.45 92.74 95.83 86.54 91.55 81.69 92.00 85.00 90.20 91.95 92.16 84.21 78.95 87.83 86.76 62.30 87.78 100.00 66.10 85.33 78.46 93.33 78.63 84.69 88.71 63.77 91.22 92.22 88.52 86.99 75.00 88.15 81.25 85.37 80.30 82.61 85.92 77.38 84.55 90.28 86.54 90.32 76.81 88.89 77.78 82.76 78.02 72.00 K alternative_acceptor Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754356_15755256;chrX_15754356_15755172;chrX_15754356_15755268;chrX_15754356_15755409 chrX_15754356_15755184 chrX_15754256_15754355;chrX_15755410_15755509 25.00 23.81 25.00 30.00 25.00 NA 42.42 26.00 25.61 NA NA 22.39 26.09 31.25 38.89 22.64 40.91 25.00 25.81 40.00 NA 38.89 20.00 40.00 26.67 NA 25.00 NA 18.18 23.53 22.73 NA 35.48 20.41 37.50 NA 26.09 NA NA 25.00 21.43 16.67 21.21 26.09 28.57 24.00 NA 15.79 17.50 NA 21.05 25.00 NA 41.67 16.00 NA 30.00 18.75 K intron_retention CG18624,RI_chrX_7787450_7787620,RI_chrX_7787450_7787687,RI_chrX_7787524_7787687 chrX - chrX_7787450_7787782 chrX_7787449_7787450;chrX_7787782_7787783 chrX_7787424_7787449;chrX_7787783_7787787 99.15 99.23 97.01 98.99 98.90 99.17 96.67 94.16 96.28 100.00 97.78 96.52 95.10 96.88 99.15 97.26 98.85 98.13 97.80 95.58 99.03 100.00 99.26 100.00 100.00 98.98 99.35 98.88 99.29 100.00 98.73 99.52 100.00 97.20 100.00 100.00 99.59 99.19 100.00 99.60 100.00 98.54 97.78 100.00 97.98 100.00 99.32 100.00 98.10 99.15 98.99 100.00 99.24 99.26 96.99 100.00 99.64 99.01 N alternative_acceptor CG15099 chr2R - chr2R_14725051_14725138 chr2R_14725074_14725138 chr2R_14725139_14725207;chr2R_14724985_14725050 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 57.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette CG11138 chrX - chrX_12467443_12475604 chrX_12467443_12467757;chrX_12467893_12475604 chrX_12467758_12467892 chrX_12466805_12467442;chrX_12475605_12477211 52.94 51.72 53.85 46.67 57.14 47.83 29.17 55.56 60.00 38.78 40.74 41.67 30.43 60.00 60.00 52.94 52.17 45.16 37.04 48.98 55.00 53.33 63.46 58.33 41.18 53.85 51.72 66.67 48.39 56.25 62.96 66.67 56.76 47.62 53.33 47.06 44.30 54.17 47.27 43.55 50.00 50.88 71.43 44.44 53.57 60.00 51.72 59.38 63.04 52.00 43.24 41.67 62.50 61.11 66.67 50.00 65.52 68.18 K intron_retention mRpS18A chr3R - chr3R_4388038_4388133 chr3R_4388037_4388038;chr3R_4388133_4388134 chr3R_4387593_4388037;chr3R_4388134_4388316 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 NA 1.61 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor oho23B,I_chr2L_2856176_2856244,I_chr2L_2856573_2856630,RI_chr2L_2856673_2856772 chr2L + chr2L_2856306_2856391 chr2L_2856306_2856376 chr2L_2856279_2856305;chr2L_2856392_2856568 99.98 100.00 100.00 99.98 99.96 99.96 100.00 100.00 100.00 99.96 100.00 99.98 100.00 100.00 99.97 99.96 99.96 99.97 99.96 99.99 100.00 99.95 99.98 99.98 99.96 100.00 99.98 76.31 100.00 99.97 99.97 100.00 99.97 100.00 99.97 100.00 99.97 99.98 99.99 99.98 99.97 99.98 99.96 99.98 99.98 99.98 99.98 100.00 99.97 99.98 99.98 99.96 100.00 99.99 99.97 99.99 100.00 99.98 K intron_retention Aldolase,I_chr3R_22083764_22086684,I_chr3R_22086804_22086875 chr3R - chr3R_22083764_22087057 chr3R_22083763_22083764;chr3R_22087057_22087058 chr3R_22083664_22083763;chr3R_22087058_22087313 1.18 0.91 1.20 0.75 1.63 1.48 3.16 0.92 0.89 0.85 1.16 0.92 1.44 0.37 1.19 0.80 1.54 0.89 2.14 0.68 1.32 1.11 1.05 0.64 2.01 1.68 1.49 2.50 1.64 0.88 1.18 1.40 1.33 1.31 1.46 1.72 0.54 0.43 0.51 2.04 2.25 1.01 1.73 2.12 0.65 1.04 0.81 1.72 1.61 0.55 0.69 1.52 1.03 1.55 1.18 0.65 0.79 0.30 K intron_retention CG10590 chr3L - chr3L_5596730_5596787 chr3L_5596729_5596730;chr3L_5596787_5596788 chr3L_5596172_5596729;chr3L_5596788_5597472 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 3.06 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG42593,F_chrX_7841357_7841447 chrX + chrX_7844331_7844396 chrX_7844331_7844393 chrX_7841448_7844330;chrX_7844397_7844817 90.47 89.80 90.38 91.38 92.31 91.49 85.07 92.41 88.72 90.91 93.18 87.37 86.54 87.80 93.10 94.55 94.00 96.67 94.34 90.35 94.44 87.61 88.24 88.00 94.12 91.67 91.30 94.87 89.29 84.31 76.92 77.78 91.89 94.52 86.67 89.47 87.93 78.26 92.54 91.11 NA 82.14 90.24 90.57 92.31 89.36 83.78 NA 89.25 92.00 87.84 92.59 83.33 92.31 94.34 88.64 90.91 NA K intron_retention CG1737 chrX + chrX_11244877_11245023 chrX_11244876_11244877;chrX_11245023_11245024 chrX_11244667_11244876;chrX_11245024_11245310 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 95.24 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 K jcn_only_AD cora,I_chr2R_15116651_15116928,I_chr2R_15129291_15129988 chr2R + chr2R_15116620_15116928 chr2R_15116651_15116928 chr2R_15116929_15117028;chr2R_15116580_15116619 0.65 0.00 0.75 1.59 0.00 0.00 0.94 0.00 0.00 NA 1.67 1.22 0.64 0.00 1.45 0.78 0.65 0.00 1.07 0.32 0.72 3.33 0.00 1.59 0.00 0.86 NA NA 9.38 0.00 0.67 4.17 2.27 0.31 NA NA 2.50 7.41 0.00 0.00 NA 0.74 0.00 0.00 0.00 0.00 NA 0.00 1.21 0.00 0.00 3.85 NA NA 0.71 NA 0.00 5.00 K intron_retention bocksbeutel chr3R - chr3R_5415505_5415604 chr3R_5415504_5415505;chr3R_5415604_5415605 chr3R_5415190_5415504;chr3R_5415605_5416709 80.00 80.65 81.08 92.45 82.61 73.08 80.95 75.44 83.93 77.27 95.00 81.58 76.19 80.00 84.62 73.91 85.00 70.00 80.00 72.58 88.89 83.33 81.25 65.85 85.71 85.71 90.91 80.00 77.27 70.59 86.67 82.93 65.22 77.78 70.00 80.00 81.25 77.14 67.57 81.82 75.00 81.13 92.31 73.08 80.95 77.78 77.50 83.33 84.78 72.88 76.19 77.78 68.00 66.67 74.29 80.56 90.91 81.58 K alternative_acceptor CG15814,I_chrX_17743744_17743940 chrX - chrX_17743744_17743940 chrX_17743844_17743940 chrX_17743941_17744040;chrX_17743644_17743743 98.11 97.92 100.00 98.08 96.97 100.00 97.83 98.11 98.98 97.56 96.97 98.31 96.97 96.97 97.14 97.73 96.88 100.00 100.00 98.92 96.67 95.56 100.00 98.55 100.00 86.21 98.68 95.45 79.75 97.01 100.00 96.88 98.17 98.08 92.86 100.00 99.20 98.41 95.51 100.00 98.51 98.73 100.00 98.57 97.22 98.75 98.08 97.25 98.39 96.88 98.48 97.50 100.00 95.35 97.62 100.00 100.00 99.10 K alternative_donor HSPC300,I_chr2R_19915648_19915744,I_chr2R_19915648_19915903,I_chr2R_19915648_19916060 chr2R - chr2R_19915648_19916136;chr2R_19915648_19915903 chr2R_19915648_19915744 chr2R_19915548_19915647;chr2R_19916137_19916160 0.00 0.00 1.37 0.00 0.00 0.00 1.98 0.00 0.84 0.00 0.00 0.50 1.03 0.00 0.00 0.62 0.00 0.94 0.81 0.29 0.00 0.00 0.00 0.00 2.50 0.00 1.82 2.33 0.00 1.45 0.65 0.00 0.00 0.49 1.18 0.00 0.00 0.00 1.67 0.83 0.58 0.44 0.00 0.00 0.50 0.66 0.00 0.00 0.72 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.68 0.26 K intron_retention CG1041,I_chr3R_2199103_2199426 chr3R - chr3R_2197521_2197579 chr3R_2197520_2197521;chr3R_2197579_2197580 chr3R_2196865_2197520;chr3R_2197580_2197828 0.00 NA NA 5.56 NA NA 0.00 0.00 0.00 NA NA 0.00 6.67 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 0.00 0.00 7.41 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 K intron_retention CG5013,I_chr3R_11877071_11877796 chr3R + chr3R_11875639_11875689 chr3R_11875638_11875639;chr3R_11875689_11875690 chr3R_11875510_11875638;chr3R_11875690_11876423 10.81 4.55 23.08 21.74 4.00 20.00 16.28 16.22 7.69 5.88 18.52 12.28 3.03 17.24 14.29 11.54 10.71 13.33 10.81 13.04 4.17 14.29 6.56 10.71 28.00 7.14 18.97 33.33 16.67 13.16 26.83 8.82 14.29 11.63 8.57 16.67 13.21 6.90 11.11 14.04 13.33 6.67 0.00 5.00 9.52 12.50 0.00 7.41 8.00 8.51 13.21 3.57 6.25 6.52 6.82 6.25 3.53 8.89 K intron_retention CG3262 chr2L + chr2L_22240104_22240169 chr2L_22240103_22240104;chr2L_22240169_22240170 chr2L_22239906_22240103;chr2L_22240170_22240402 8.86 8.06 7.32 17.02 11.76 5.15 9.85 6.36 14.06 11.11 9.86 9.90 11.58 8.70 8.87 7.01 9.38 8.94 6.82 5.94 9.47 16.39 9.71 12.10 8.57 10.17 17.82 21.74 12.90 8.06 3.37 5.74 8.77 7.88 12.20 6.80 15.79 13.64 8.51 5.88 13.33 6.76 5.68 8.86 11.93 7.45 7.48 7.22 6.47 12.22 12.26 7.46 4.60 12.79 8.67 6.15 8.92 4.63 K intron_retention RpL24,I_chr2L_13394941_13395015 chr2L - chr2L_13394941_13395055 chr2L_13394940_13394941;chr2L_13395055_13395056 chr2L_13394865_13394940;chr2L_13395056_13395065 0.20 0.00 0.08 0.00 0.00 0.00 0.44 0.12 0.20 0.00 0.00 0.06 0.00 0.12 0.12 0.10 0.00 0.17 0.00 0.13 0.29 0.42 2.34 0.75 2.82 0.43 3.14 2.22 0.59 0.00 0.93 0.32 1.29 0.11 1.41 7.33 0.00 0.00 1.14 0.39 1.40 0.00 0.00 0.45 0.07 0.25 1.04 0.36 0.55 0.00 2.40 0.00 0.21 2.35 0.22 0.89 0.00 0.13 K jcn_only_AD px,RI_chr2R_18424832_18424969,RI_chr2R_18448648_18449438,R_chr2R_18448676_18449403 chr2R - chr2R_18428483_18442722 chr2R_18428483_18430834 chr2R_18428263_18428482 22.58 31.03 17.65 29.31 25.81 33.33 22.58 40.98 25.68 28.57 22.22 19.44 38.71 32.26 38.78 53.49 29.63 24.32 31.91 31.75 NA 9.09 14.29 15.07 13.64 20.69 17.74 9.09 24.39 12.50 21.21 28.00 15.94 36.54 20.00 12.20 7.02 8.33 13.46 10.64 33.33 25.37 35.14 10.71 10.53 28.57 0.00 55.56 32.84 8.33 14.29 13.79 24.00 NA 35.14 2.86 13.33 51.79 K intron_retention CG31619,I_chr2L_21725446_21728027 chr2L + chr2L_21719644_21720122 chr2L_21719643_21719644;chr2L_21720122_21720123 chr2L_21719514_21719643;chr2L_21720123_21720140 21.70 20.00 NA 21.67 NA NA 25.00 29.63 35.00 NA NA 11.86 NA 30.77 42.86 29.41 NA NA 21.74 21.43 NA 7.69 NA NA NA 27.78 NA NA NA NA 27.78 15.00 10.00 37.04 NA NA NA NA 29.41 11.54 5.71 19.05 38.46 7.69 3.45 4.00 0.00 NA 28.57 NA NA NA NA NA 29.17 25.00 NA 6.25 K jcn_only_AA Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046104;chr3L_16045251_16046129;chr3L_16045251_16046108;chr3L_16045251_16045854 chr3L_16045251_16046111 chr3L_16045216_16045250;chr3L_16046130_16046204 16.36 21.95 14.58 19.05 21.43 10.91 13.70 19.05 18.81 10.81 2.50 14.43 18.46 13.85 20.25 12.90 27.42 6.67 21.25 17.19 3.85 27.27 18.99 12.24 15.22 10.45 8.96 11.90 15.52 22.09 19.05 23.08 16.33 10.00 14.58 20.75 15.00 10.00 20.45 17.14 28.57 11.50 20.00 9.09 27.27 22.03 19.35 16.39 23.36 19.05 15.52 10.71 3.85 NA 17.95 15.15 9.52 23.23 K jcn_only_AA Ptpmeg,I_chr3L_353688_353782,I_chr3L_355125_355175 chr3L + chr3L_355125_355198 chr3L_355125_355175 chr3L_355057_355124;chr3L_355199_355275 0.00 0.00 0.00 1.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.74 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.59 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.74 0.55 0.00 0.00 K cassette su(Hw) chr3R - chr3R_10133693_10133997 chr3R_10133693_10133756;chr3R_10133931_10133997 chr3R_10133757_10133930 chr3R_10132820_10133692;chr3R_10133998_10134121 80.00 100.00 NA 70.00 NA NA 84.62 66.67 69.23 NA NA 75.00 66.67 NA NA 66.67 NA NA 100.00 80.00 80.00 100.00 100.00 83.33 NA 83.33 NA NA 66.67 NA 83.33 NA NA 70.00 NA NA NA NA 57.14 85.71 NA 87.50 80.00 NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA K intron_retention tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563503_565293 chr3R_563502_563503;chr3R_565293_565294 chr3R_563488_563502;chr3R_565294_565301 46.15 NA NA 14.29 NA NA NA 50.00 24.24 NA NA 69.23 NA NA NA 40.00 NA NA NA 63.64 NA NA NA NA NA NA 46.15 NA NA NA NA NA NA NA NA NA 27.27 NA NA 53.85 NA 33.33 NA NA NA NA NA NA 47.06 NA NA NA NA NA 26.67 NA 66.67 NA N alternative_donor CG17760 chr2R + chr2R_8513482_8514257;chr2R_8513642_8514257 chr2R_8513731_8514257 chr2R_8514258_8514421;chr2R_8513465_8513481 13.81 9.09 16.67 10.00 NA 22.22 28.00 12.20 9.86 NA 0.00 11.11 25.00 10.00 0.00 14.55 12.50 25.00 17.65 10.00 14.29 0.00 17.65 12.50 20.00 16.67 20.00 NA NA 14.29 16.67 NA 20.00 27.03 8.33 10.00 0.00 25.00 NA 16.67 0.00 15.38 5.88 0.00 NA 15.38 0.00 33.33 17.07 18.18 13.33 10.00 NA NA 7.14 11.11 0.00 20.00 K intron_retention CG11063 chrX - chrX_13721139_13721372 chrX_13721138_13721139;chrX_13721372_13721373 chrX_13721076_13721138;chrX_13721373_13721542 5.86 4.44 10.42 5.06 4.44 8.70 11.63 10.26 8.86 4.88 12.50 5.71 8.33 9.09 3.92 16.00 10.00 4.44 7.32 11.11 7.32 3.76 5.56 4.08 0.00 6.52 7.27 0.00 5.32 5.71 11.11 7.03 4.35 2.90 3.39 9.23 9.80 2.33 5.48 0.00 8.74 5.00 7.41 4.35 5.30 9.86 0.00 6.33 7.06 8.82 8.47 3.12 3.17 0.00 5.88 3.12 5.88 5.86 K alternative_acceptor CG14882 chr3R + chr3R_12269100_12269224 chr3R_12269100_12269149 chr3R_12268934_12269099;chr3R_12269225_12270541 100.00 NA NA 100.00 NA NA 100.00 88.89 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA NA 100.00 90.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA NA NA NA 100.00 100.00 92.31 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 K intron_retention arm,I_chrX_1793073_1794406,RI_chrX_1795648_1795745,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1789075_1789146 chrX_1789074_1789075;chrX_1789146_1789147 chrX_1788874_1789074;chrX_1789147_1790786 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.40 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL15 chr3LHet + chr3LHet_2398002_2398127 chr3LHet_2398001_2398002;chr3LHet_2398127_2398128 chr3LHet_2397802_2398001;chr3LHet_2398128_2398454 100.00 99.15 100.00 100.00 100.00 100.00 99.84 100.00 100.00 98.89 100.00 100.00 100.00 100.00 100.00 99.66 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.84 100.00 100.00 99.83 98.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.07 100.00 100.00 100.00 100.00 99.25 100.00 100.00 100.00 100.00 99.39 100.00 100.00 100.00 K jcn_only_AD sta chrX - chrX_1376949_1377164;chrX_1376949_1377143 chrX_1376949_1377290 chrX_1376851_1376948;chrX_1377291_1377379 99.47 98.78 99.33 99.69 99.61 99.72 99.29 99.64 99.46 98.90 99.52 99.60 99.71 99.50 99.65 99.51 99.50 99.55 99.64 99.69 99.65 99.04 96.83 97.00 99.08 99.65 98.43 99.76 99.15 99.42 97.61 99.52 99.81 99.62 97.21 98.59 98.78 97.83 98.25 99.86 99.56 99.67 99.68 99.83 99.53 99.45 98.19 99.78 99.39 97.90 95.74 98.84 99.46 93.08 99.47 98.30 97.72 99.73 K jcn_only_AA CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20824631_20825283 chr2L_20824631_20825271 chr2L_20824625_20824630;chr2L_20825284_20825366 91.15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA 96.43 NA NA NA NA NA NA 89.39 NA NA NA NA NA 93.10 NA 91.23 NA NA NA NA NA NA NA NA NA 91.07 K intron_retention gro chr3R + chr3R_21869332_21870031 chr3R_21869331_21869332;chr3R_21870031_21870032 chr3R_21869237_21869331;chr3R_21870032_21870095 0.00 0.00 0.00 0.00 0.00 0.00 2.61 0.00 1.60 0.00 0.00 2.13 0.98 0.00 0.00 0.00 1.67 0.00 0.81 1.10 0.00 0.00 0.93 0.00 0.00 2.33 3.16 6.25 0.00 0.00 0.00 0.98 0.00 0.46 0.96 0.00 1.88 0.00 0.00 1.08 0.00 2.46 0.00 0.00 0.00 0.00 0.88 0.00 1.85 0.00 1.25 0.00 0.00 2.04 1.88 1.53 0.00 0.00 K intron_retention CG2064 chr2R + chr2R_3553522_3553650 chr2R_3553521_3553522;chr2R_3553650_3553651 chr2R_3553444_3553521;chr2R_3553651_3553914 0.73 0.00 0.00 0.99 1.37 0.00 1.50 0.00 0.87 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 1.41 0.93 0.79 1.80 0.00 0.79 1.29 2.39 2.01 0.42 0.66 0.68 0.77 1.19 0.97 2.00 1.71 0.97 0.90 1.18 0.67 0.00 1.23 1.27 1.20 1.00 1.59 0.00 1.33 0.73 1.54 0.00 0.00 0.00 0.00 0.62 0.00 K alternative_donor Pak,RI_chr3R_2181143_2181934 chr3R + chr3R_2176677_2180635 chr3R_2177074_2180635 chr3R_2180636_2180902;chr3R_2176656_2176676 81.25 80.00 85.07 68.75 76.00 73.85 88.57 83.33 73.19 72.97 67.35 78.26 79.55 86.54 79.69 86.11 81.25 82.54 82.46 77.48 81.25 88.46 82.61 77.78 80.49 83.78 85.71 85.19 75.56 92.31 78.79 75.00 77.36 78.57 91.18 87.50 78.95 77.78 81.82 82.98 84.62 70.45 84.44 85.25 54.29 89.66 84.62 84.13 76.69 70.97 90.57 73.91 86.21 89.47 83.56 78.79 62.50 76.74 K intron_retention CG42540,C_chr3L_4563905_4578759 chr3L + chr3L_4580160_4586579 chr3L_4580159_4580160;chr3L_4586579_4586580 chr3L_4580143_4580159;chr3L_4586580_4586718 11.43 NA NA 11.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG42348,I_chr3L_20149990_20151579 chr3L - chr3L_20149099_20151579 chr3L_20149099_20149779;chr3L_20150323_20151579 chr3L_20149780_20150322 chr3L_20149001_20149098;chr3L_20151580_20151679 2.78 1.54 2.70 7.14 2.27 4.65 2.27 2.00 2.65 3.45 3.45 2.27 5.56 0.00 2.70 3.12 2.44 6.90 2.08 4.82 2.38 9.80 3.61 3.61 4.17 2.33 4.44 8.33 2.94 5.56 0.00 3.23 2.67 2.63 4.26 5.77 2.88 2.11 3.96 2.83 2.13 1.94 2.78 1.61 3.45 3.03 1.85 5.00 2.74 1.92 4.41 2.56 1.82 2.94 1.79 4.00 1.82 2.00 K intron_retention CHKov1,F_chr3R_21149619_21151172 chr3R - chr3R_21149651_21149744 chr3R_21149650_21149651;chr3R_21149744_21149745 chr3R_21149588_21149650;chr3R_21149745_21149810 76.23 81.82 50.00 73.33 88.89 63.64 70.83 82.14 70.00 87.50 80.00 71.43 65.00 76.47 72.22 76.00 64.29 84.62 87.50 87.50 66.67 87.50 68.75 87.50 NA 71.43 60.00 75.00 88.24 100.00 75.00 62.50 65.22 68.57 NA 50.00 91.67 60.00 56.25 70.37 84.62 76.92 63.64 83.33 85.71 89.47 NA 86.67 77.78 61.54 80.00 NA 77.78 NA 83.33 88.89 73.33 77.78 K jcn_only_AA Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654157,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15648806_15649136 chrX_15648833_15649136 chrX_15649137_15649180;chrX_15648519_15648805 37.67 34.78 37.14 47.92 NA 51.72 49.21 45.00 43.55 NA NA 37.04 72.97 53.19 37.14 52.38 25.00 37.50 35.09 24.59 48.15 33.33 NA NA NA 38.10 47.83 NA 33.33 29.63 40.00 25.71 50.00 34.43 25.93 NA NA NA NA 35.38 40.00 39.68 37.84 23.81 34.78 35.85 NA 42.47 42.42 NA 46.43 26.47 NA NA 36.84 NA NA 47.56 K jcn_only_AD D1,RI_chr3R_5065631_5065691,I_chr3R_5065631_5065695,I_chr3R_5065631_5065697 chr3R - chr3R_5065631_5065767;chr3R_5065631_5065697;chr3R_5065631_5065695 chr3R_5065631_5065691 chr3R_5065531_5065630;chr3R_5065768_5065790 23.81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 28.57 NA NA 23.81 NA NA NA NA NA NA NA NA NA 15.62 K jcn_only_AA Papss chr3L + chr3L_19838529_19838611;chr3L_19838529_19838596 chr3L_19838529_19838634 chr3L_19838397_19838528;chr3L_19838635_19838730 0.00 NA NA NA NA NA NA NA 0.00 NA NA 4.76 NA NA NA NA NA NA NA 9.38 NA NA 14.29 NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA 9.52 NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA NA NA NA NA 5.41 K intron_retention Zasp52,I_chr2R_11690993_11701987 chr2R - chr2R_11651095_11651150 chr2R_11651094_11651095;chr2R_11651150_11651151 chr2R_11650855_11651094;chr2R_11651151_11651334 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 2.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629527_2629921 chr3L_2629527_2629913 chr3L_2629427_2629526;chr3L_2629922_2630021 94.98 98.89 94.07 94.44 91.46 92.65 93.40 95.24 94.31 96.15 100.00 95.62 97.21 97.59 92.49 94.81 95.45 96.59 95.14 93.67 98.94 93.33 95.27 91.76 96.00 94.63 95.45 100.00 91.21 95.51 93.48 94.12 98.31 94.98 90.79 95.45 95.35 94.52 97.32 97.04 93.75 94.39 97.71 91.67 94.52 95.83 93.85 94.70 94.71 92.31 95.42 94.59 95.29 96.23 94.87 97.65 97.01 94.90 K multi_cassette CtBP chr3R + chr3R_8845924_8847141 chr3R_8845924_8846575;chr3R_8846837_8846897;chr3R_8847039_8847141 chr3R_8846576_8846836;chr3R_8846898_8847038 chr3R_8845618_8845923;chr3R_8847142_8847364 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N intron_retention Lag1,RI_chrX_6153758_6153930,I_chrX_6153758_6155077,RI_chrX_6153758_6161036,I_chrX_6160751_6160887,I_chrX_6160907_6161036 chrX - chrX_6153758_6154631 chrX_6153757_6153758;chrX_6154631_6154632 chrX_6153658_6153757;chrX_6154632_6154697 16.67 25.00 15.00 25.00 NA 15.79 25.93 8.33 17.95 NA 17.65 15.38 22.22 23.81 NA 19.51 NA 20.00 15.00 16.28 NA 21.43 18.75 12.50 NA 10.53 NA 28.57 11.11 12.50 19.05 23.08 NA 20.93 20.00 NA NA NA 12.50 10.34 NA 16.67 0.00 14.29 20.00 11.11 10.53 20.00 17.65 NA 11.11 16.67 NA 15.38 6.90 25.00 NA NA K jcn_only_AD Ras85D,I_chr3R_5338160_5338509,EI_chr3R_5338175_5338279,I_chr3R_5338175_5338299 chr3R - chr3R_5338175_5338299;chr3R_5338175_5338509 chr3R_5338175_5338279 chr3R_5338075_5338174;chr3R_5338510_5338609 2.52 3.35 2.83 2.10 1.64 2.24 1.77 2.12 2.73 2.19 2.78 1.54 1.21 1.70 1.47 3.10 3.41 3.93 2.15 3.27 0.41 3.18 4.55 2.54 2.88 1.88 2.55 5.76 1.70 2.02 4.53 1.39 1.55 0.85 2.52 2.13 2.64 3.82 3.24 3.20 1.10 3.90 2.05 6.74 1.22 0.64 2.40 2.78 1.62 3.62 4.49 1.63 4.65 3.76 2.41 2.82 4.43 2.36 K cassette Psi,I_chr2R_12753387_12753659 chr2R - chr2R_12753387_12753659 chr2R_12753387_12753448;chr2R_12753602_12753659 chr2R_12753449_12753601 chr2R_12753287_12753386;chr2R_12753660_12753759 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 K intron_retention Doa,I_chr3R_24715823_24718923,I_chr3R_24747391_24747896 chr3R + chr3R_24713971_24714030 chr3R_24713970_24713971;chr3R_24714030_24714031 chr3R_24713819_24713970;chr3R_24714031_24714256 68.75 64.29 68.52 72.58 75.00 81.08 64.29 72.31 69.86 68.75 76.92 75.71 71.43 75.00 67.31 61.04 71.05 68.29 65.00 73.79 78.05 51.85 68.54 71.93 73.81 84.09 83.33 64.71 77.42 78.95 66.67 70.97 56.67 80.65 75.68 86.05 63.64 59.26 68.42 61.45 66.67 75.61 76.32 66.67 62.96 65.85 54.76 68.75 62.77 75.76 66.15 70.27 51.22 60.71 60.00 56.25 74.19 80.00 K jcn_only_AD CaMKI,I_chr4_466377_467256,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,RI_chr4_467374_467424,RI_chr4_467482_467543,I_chr4_467862_471815,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_466592_467726;chr4_466275_467726;chr4_466377_467726;chr4_467662_467726;chr4_466798_467726 chr4_467273_467726 chr4_467727_467826;chr4_466269_466274 0.00 0.00 NA 6.45 NA 0.00 0.00 0.00 1.47 NA NA 0.00 0.00 0.00 NA 2.50 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 5.00 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention CG11092 chrX + chrX_13717365_13717443 chrX_13717364_13717365;chrX_13717443_13717444 chrX_13717184_13717364;chrX_13717444_13718247 0.00 0.75 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.36 0.78 0.00 0.00 0.00 0.00 0.00 1.94 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 1.11 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.82 0.88 0.84 0.67 0.95 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_donor CG8531,RI_chr2R_10144869_10144912 chr2R + chr2R_10145138_10145276;chr2R_10145070_10145276 chr2R_10145224_10145276 chr2R_10145277_10145393;chr2R_10144926_10145069 98.70 98.75 98.96 99.17 98.41 98.59 100.00 94.93 90.91 97.96 98.70 95.17 100.00 98.41 98.99 92.56 100.00 98.80 100.00 96.15 98.72 77.42 99.01 99.04 98.41 100.00 99.18 98.97 98.70 98.61 74.63 98.39 98.95 94.31 98.39 98.39 98.97 88.31 99.05 99.09 98.08 99.35 98.36 98.84 98.53 98.82 98.75 98.46 93.28 83.49 84.96 100.00 98.25 98.55 98.90 98.89 98.97 98.31 K multi_cassette Eph,I_chr4_631523_634240,I_chr4_631555_631910,I_chr4_631643_631910,I_chr4_632065_634240,I_chr4_632433_632707,I_chr4_632433_632988,I_chr4_639690_640473,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_631523_634240 chr4_631523_631910;chr4_632065_632138;chr4_632282_634240 chr4_631911_632064;chr4_632139_632281 chr4_631455_631522;chr4_634241_634340 100.00 NA NA 58.33 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA NA 75.00 NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA 100.00 NA NA NA NA NA 90.00 100.00 100.00 NA NA NA NA 92.31 NA 100.00 NA NA NA 83.33 NA NA NA K cassette CG8788,RI_chr2R_5026774_5028942,RI_chr2R_5033951_5034150,I_chr2R_5036518_5036570 chr2R + chr2R_5026774_5028942 chr2R_5026774_5027484;chr2R_5027804_5028942 chr2R_5027485_5027803 chr2R_5026674_5026773;chr2R_5028943_5029042 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N cassette CG33558,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2816779_2817753 chr2R_2816779_2817354;chr2R_2817604_2817753 chr2R_2817355_2817603 chr2R_2816679_2816778;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 82.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention rost chr2L - chr2L_8987288_8988935 chr2L_8987287_8987288;chr2L_8988935_8988936 chr2L_8986936_8987287;chr2L_8988936_8989229 0.00 1.75 1.29 0.77 0.00 1.40 0.00 0.67 2.31 0.00 0.00 1.50 0.00 0.00 1.38 1.22 1.39 1.65 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 1.26 0.00 0.00 0.63 0.00 0.00 2.38 0.00 0.00 0.00 0.00 1.83 0.00 0.00 2.04 0.00 1.98 1.67 1.21 0.00 0.00 0.00 0.00 0.00 1.01 1.00 0.00 0.00 K intron_retention CG13510,I_chr2R_18547479_18547540,R_chr2R_18548408_18548573,I_chr2R_18551419_18551493 chr2R + chr2R_18545781_18546427 chr2R_18545780_18545781;chr2R_18546427_18546428 chr2R_18545410_18545780;chr2R_18546428_18546928 0.00 0.00 NA NA NA NA NA NA NA 0.00 NA 25.00 NA NA NA NA NA NA NA 26.32 NA 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 NA NA NA NA 0.00 26.67 0.00 5.00 12.50 21.05 NA NA NA 21.05 0.00 0.00 6.25 NA NA 0.00 NA NA 0.00 0.00 NA NA 8.00 0.00 K jcn_only_AA CG6697 chr3R + chr3R_18887542_18887603 chr3R_18887542_18887598 chr3R_18887241_18887541;chr3R_18887604_18888474 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 96.77 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 NA 100.00 100.00 100.00 97.50 100.00 100.00 K cassette RhoGAP71E,I_chr3L_15583097_15589765 chr3L + chr3L_15594396_15599758;chr3L_15594396_15597935 chr3L_15594396_15594742;chr3L_15595616_15597935,chr3L_15595616_15599758 chr3L_15594743_15595615 chr3L_15594333_15594395;chr3L_15599759_15600439 89.76 90.86 87.57 88.00 90.30 95.24 88.95 82.83 88.52 91.36 89.76 90.70 76.67 89.26 90.64 97.08 87.39 88.55 86.61 87.74 90.32 65.09 88.89 91.09 89.47 77.48 91.26 93.81 84.85 92.34 92.00 87.86 90.08 88.79 89.06 90.57 87.56 89.36 89.97 91.56 91.14 86.29 88.98 86.18 86.22 86.53 90.58 87.19 90.91 91.62 89.50 90.37 90.75 90.91 91.62 93.79 92.68 89.93 K jcn_only_AA mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818607_7818970;chr3R_7818597_7818970 chr3R_7818575_7818970 chr3R_7818971_7818995;chr3R_7818507_7818574 65.27 58.52 58.99 62.39 58.46 74.03 65.00 66.95 61.72 60.34 63.74 64.06 65.10 58.82 61.07 65.27 61.69 66.13 66.26 72.43 58.14 69.95 71.26 70.49 74.29 62.76 63.24 69.35 70.73 62.90 62.16 82.22 72.48 65.08 82.86 74.07 62.50 63.24 76.19 62.03 74.07 66.42 56.52 64.04 79.45 67.82 76.92 71.83 61.63 66.23 64.29 69.33 80.00 63.33 64.18 66.67 70.71 72.87 K cassette I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350 chr3L - chr3L_1499338_1501350;chr3L_1499338_1500244;chr3L_1499338_1501798 chr3L_1499338_1499771;chr3L_1499880_1501350,chr3L_1499880_1501798,chr3L_1499880_1500244 chr3L_1499772_1499879 chr3L_1499043_1499337;chr3L_1501799_1501892 8.20 6.76 6.56 18.75 3.77 5.26 0.00 14.10 6.80 7.55 12.20 16.67 45.10 6.25 4.88 9.46 7.27 6.25 6.49 8.08 11.11 10.14 11.11 11.11 10.64 2.44 7.25 12.07 7.55 13.21 5.88 7.27 14.89 6.86 8.33 12.00 8.33 9.09 10.13 7.48 10.91 6.14 7.02 17.39 7.58 10.98 13.85 4.95 7.83 12.16 14.61 11.48 6.12 10.00 7.79 15.07 8.20 5.19 K jcn_only_AD CG3631 chr3R + chr3R_10705483_10705553 chr3R_10705488_10705553 chr3R_10705554_10705765;chr3R_10705178_10705482 7.50 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K multi_cassette Nipped-B,I_chr2R_580301_580515,I_chr2R_580453_580515,I_chr2R_580989_582555,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_580301_582623 chr2R_580301_580358;chr2R_580453_580515;chr2R_580674_580752;chr2R_580989_582623 chr2R_580359_580452;chr2R_580516_580673;chr2R_580753_580988 chr2R_580236_580300;chr2R_582624_582655 100.00 100.00 100.00 96.15 90.00 93.33 98.08 97.62 97.96 100.00 100.00 97.37 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 95.45 100.00 86.67 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 96.15 92.31 91.67 86.67 100.00 100.00 100.00 100.00 K intron_retention CE_chrX_20766225_20927825,CG15449 chrX - chrX_20911187_20911411 chrX_20911186_20911187;chrX_20911411_20911412 chrX_20911063_20911186;chrX_20911412_20912271 100.00 NA NA NA NA NA 90.91 NA 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA 90.00 NA NA NA NA NA NA NA NA NA K alternative_donor rdx,I_chr3R_9796825_9822742,I_chr3R_9849617_9851443 chr3R - chr3R_9849617_9851560;chr3R_9849617_9851567 chr3R_9849617_9851443 chr3R_9849583_9849616;chr3R_9851568_9851588 22.65 NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA K jcn_only_AD Syx16,RI_chrX_20264319_20264376 chrX - chrX_20264319_20264380 chrX_20264319_20264376 chrX_20264219_20264318;chrX_20264381_20264476 1.68 4.62 1.52 2.50 2.78 6.56 1.33 1.10 0.76 0.00 0.00 3.01 0.00 0.00 2.60 0.00 2.27 1.45 1.54 2.29 1.92 0.00 3.19 1.77 4.92 3.03 1.30 0.00 3.20 1.22 2.67 1.12 2.38 3.37 3.80 7.69 2.25 2.22 0.77 0.70 0.00 2.63 0.00 1.06 1.81 0.79 3.70 1.68 1.12 1.94 2.30 0.00 2.50 0.00 1.25 2.91 1.12 0.00 K alternative_acceptor Cbp80,I_chrX_4545969_4549703,I_chrX_4551105_4551157 chrX + chrX_4551105_4551173 chrX_4551105_4551157 chrX_4551005_4551104;chrX_4551174_4551257 0.00 1.49 0.00 1.09 0.00 2.38 0.00 2.13 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 1.15 0.00 0.00 0.00 4.44 0.00 0.00 1.27 0.00 0.00 0.00 1.43 1.27 1.59 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824086_11825951 chr2R_11824086_11825183;chr2R_11825385_11825619;chr2R_11825773_11825951 chr2R_11825184_11825384;chr2R_11825620_11825772 chr2R_11823989_11824085;chr2R_11825952_11826483 0.00 1.41 0.00 23.91 1.69 1.82 1.41 0.00 0.00 0.00 3.92 2.33 4.92 2.00 1.37 2.70 0.00 0.00 0.00 1.89 2.13 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 1.96 0.84 0.00 1.06 0.00 0.00 0.00 0.00 1.02 0.00 2.22 0.95 0.00 K intron_retention CG7852,Cct1,Cct2 chr3L + chr3L_1542737_1542812 chr3L_1542736_1542737;chr3L_1542812_1542813 chr3L_1542486_1542736;chr3L_1542813_1542958 0.00 0.00 NA 0.00 NA NA 25.00 0.00 8.00 3.45 NA 9.09 NA NA 16.67 NA NA NA 0.00 0.00 NA 16.39 0.00 7.14 12.50 NA 15.38 13.79 17.65 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 2.70 2.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.70 0.00 10.71 0.00 0.00 0.00 0.00 0.00 0.00 4.76 K jcn_only_AD Nedd4,I_chr3L_17532828_17532882,I_chr3L_17532828_17533787,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17532828_17533787 chr3L_17532837_17533787 chr3L_17533788_17533887;chr3L_17532728_17532827 94.38 NA NA NA NA NA NA NA 95.45 NA NA 82.14 NA NA NA NA NA NA NA NA NA NA 93.55 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 95.83 90.48 NA 93.75 NA 95.00 NA NA NA 100.00 90.91 NA NA NA NA NA NA NA NA NA K intron_retention lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6394546_6419543,I_chr2R_6394664_6395833,I_chr2R_6397642_6398119,RI_chr2R_6403557_6403850,I_chr2R_6403557_6406705,I_chr2R_6404486_6419543,R_chr2R_6408775_6419537,I_chr2R_6409616_6419543,I_chr2R_6413368_6414281,I_chr2R_6419625_6419686,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6393579_6419543 chr2R_6393578_6393579;chr2R_6419543_6419544 chr2R_6393408_6393578;chr2R_6419544_6419624 13.07 11.39 13.19 11.27 11.90 12.22 36.21 11.18 17.19 10.42 15.62 10.07 16.92 19.18 10.40 23.48 7.89 10.75 10.47 13.76 7.14 6.25 16.07 16.13 23.08 17.02 15.22 42.11 10.11 7.00 11.65 14.89 6.70 10.67 14.93 12.36 16.81 13.64 11.82 13.07 8.00 10.99 15.28 15.05 13.04 13.46 13.51 7.87 13.11 11.11 15.69 21.74 8.06 14.29 12.50 17.02 21.62 10.81 K jcn_only_AA osa,I_chr3R_13523609_13523702 chr3R - chr3R_13523636_13523702 chr3R_13523639_13523702 chr3R_13523703_13523802;chr3R_13523387_13523635 95.66 94.27 98.37 94.92 95.92 95.19 96.73 95.62 96.86 96.89 92.31 94.36 93.75 95.16 97.44 95.88 95.45 94.97 95.80 95.21 97.30 96.43 93.42 95.62 95.11 97.89 93.85 92.97 94.12 96.45 94.48 96.11 95.83 97.50 94.15 96.46 93.26 96.40 96.84 96.71 95.73 96.36 97.39 94.06 95.90 96.62 95.24 95.66 96.00 93.53 94.12 92.44 98.25 92.00 95.26 97.27 95.74 95.36 K intron_retention Jupiter,I_chr3R_7417030_7419354,I_chr3R_7418347_7445425,RI_chr3R_7442793_7445425 chr3R - chr3R_7419077_7419354 chr3R_7419076_7419077;chr3R_7419354_7419355 chr3R_7419044_7419076;chr3R_7419355_7419454 60.00 NA NA 50.00 NA NA NA NA 70.00 NA NA 21.05 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA 88.24 NA NA NA NA NA NA NA NA NA NA K intron_retention Fps85D,I_chr3R_5194729_5194776,I_chr3R_5216796_5218450 chr3R - chr3R_5195433_5198477 chr3R_5195432_5195433;chr3R_5198477_5198478 chr3R_5195058_5195432;chr3R_5198478_5198655 0.00 1.16 2.11 0.79 1.32 0.00 0.00 1.68 1.23 0.00 0.00 0.00 0.00 2.33 1.12 0.00 3.33 2.41 2.27 1.91 0.00 3.23 1.96 0.00 0.00 0.00 0.99 0.00 0.00 0.00 2.11 0.00 2.44 1.52 3.12 0.00 0.00 0.00 1.94 3.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 1.22 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 2.82 K alternative_acceptor CG2004,I_chrX_8608130_8608508,RI_chrX_8608147_8608508,I_chrX_8608169_8608438 chrX - chrX_8608169_8608508;chrX_8608130_8608508;chrX_8608150_8608508 chrX_8608147_8608508 chrX_8608509_8608538;chrX_8608069_8608129 0.00 4.76 0.00 0.00 7.14 0.00 12.00 3.57 4.65 10.53 0.00 0.00 0.00 4.76 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 6.67 4.88 8.70 0.00 5.00 0.00 9.09 3.23 4.55 0.00 0.00 8.70 0.00 0.00 0.00 4.65 0.00 0.00 0.00 6.45 0.00 9.09 4.55 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention hts,I_chr2R_15286599_15294119,CG34197,I_chr2R_15293594_15294119,RI_chr2R_15294446_15295345,I_chr2R_15294825_15295345,I_chr2R_15295410_15295479,I_chr2R_15311185_15312327,I_chr2R_15311303_15312026 chr2R - chr2R_15286599_15295345 chr2R_15286598_15286599;chr2R_15295345_15295346 chr2R_15286531_15286598;chr2R_15295346_15295409 3.90 8.06 5.00 8.57 5.56 4.60 6.85 4.59 5.62 30.77 5.88 3.45 2.78 6.33 6.17 10.00 1.82 4.11 8.64 3.90 10.64 0.00 7.58 3.45 2.22 3.41 2.63 8.33 3.77 2.70 4.04 0.00 0.00 5.22 0.00 4.00 3.33 4.44 3.45 3.75 2.27 6.21 5.63 4.26 0.00 2.22 0.00 1.65 3.57 3.39 2.56 0.00 1.56 5.56 4.84 3.12 3.92 2.04 K intron_retention CG5594,CG2812 chr2R + chr2R_19800358_19800419 chr2R_19800357_19800358;chr2R_19800419_19800420 chr2R_19800252_19800357;chr2R_19800420_19800549 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 8.65 0.00 0.00 1.28 0.00 1.12 0.00 12.07 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA CG31751,RI_chr2L_18677311_18677391,RI_chr2L_18677473_18677932 chr2L + chr2L_18677473_18682264;chr2L_18677473_18677932 chr2L_18677473_18678838 chr2L_18677392_18677472 95.34 NA NA 61.90 NA NA NA NA 100.00 NA 91.67 95.24 NA NA NA NA NA NA NA 95.45 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.32 NA NA NA NA NA NA 95.83 NA NA NA NA NA 100.00 NA NA 88.00 K alternative_donor endos,I_chr3L_14024099_14024488,I_chr3L_14024103_14024158,I_chr3L_14024103_14024546,noncoding_12505,I_chr3L_14024496_14024546 chr3L - chr3L_14024103_14024546;chr3L_14024103_14024158;chr3L_14024103_14024407 chr3L_14024103_14024488 chr3L_14024003_14024102;chr3L_14024547_14024588 93.94 93.75 94.12 96.15 93.94 97.18 92.71 98.44 93.30 91.04 97.40 95.28 94.19 96.05 98.13 93.40 97.22 97.56 97.00 94.94 98.68 83.64 85.39 89.74 92.16 98.84 96.97 91.23 90.32 93.55 95.95 95.06 75.86 94.12 93.94 96.36 91.03 86.89 92.50 91.97 93.94 93.71 94.52 97.10 93.88 92.92 94.59 93.41 95.42 87.76 96.15 98.44 95.00 90.14 96.88 89.02 92.86 91.79 K alternative_donor Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046104;chr3L_16045316_16046104;chr3L_16045277_16046104 chr3L_16045275_16046104 chr3L_16046105_16046204;chr3L_16045216_16045250 24.66 29.03 27.50 21.62 30.43 25.00 26.92 25.00 29.33 9.09 31.03 27.03 28.89 30.61 14.58 26.56 24.32 38.46 24.14 20.99 25.81 17.54 27.78 29.41 28.57 26.32 19.15 20.00 23.81 15.09 18.87 13.04 18.33 23.33 26.47 32.43 26.92 17.86 31.25 18.75 20.69 23.86 25.58 20.00 13.04 21.21 22.22 14.29 28.95 35.71 25.64 25.00 13.33 NA 30.51 20.83 16.67 8.93 K intron_retention Dscam,F_chr2R_3219886_3228832,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3219708_3219765 chr2R_3219707_3219708;chr2R_3219765_3219766 chr2R_3218481_3219707;chr2R_3219766_3219885 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.92 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 K cassette Reps,I_chr2L_11105525_11105656 chr2L - chr2L_11103170_11103843 chr2L_11103170_11103322;chr2L_11103410_11103843 chr2L_11103323_11103409 chr2L_11100956_11103169;chr2L_11103844_11104280 7.69 7.41 4.35 7.41 6.67 9.52 0.00 5.71 5.77 21.43 4.55 5.26 5.56 0.00 7.41 14.29 5.56 7.69 6.25 5.56 4.76 38.89 7.69 12.12 22.73 0.00 12.12 14.29 12.00 3.33 4.76 12.50 15.38 2.94 8.00 18.18 13.04 8.33 8.57 6.52 7.69 6.12 6.67 7.41 27.78 14.29 16.67 13.04 9.09 15.00 3.70 10.53 4.35 7.69 4.76 15.38 9.68 7.69 K jcn_only_AD CG15309,RI_chrX_10102328_10103556,RI_chrX_10102328_10104750 chrX - chrX_10102328_10106185 chrX_10102328_10104040 chrX_10102228_10102327;chrX_10106186_10106379 8.70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.70 K intron_retention mRpS11,I_chr3R_12898717_12898778 chr3R + chr3R_12899061_12899223 chr3R_12899060_12899061;chr3R_12899223_12899224 chr3R_12898960_12899060;chr3R_12899224_12899289 0.00 0.00 0.00 3.12 0.00 0.00 0.00 1.89 2.90 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 1.54 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 K jcn_only_AA Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045275_16046104;chr3L_16045275_16046111 chr3L_16045275_16045854 chr3L_16045255_16045274;chr3L_16046112_16046204 7.14 5.00 3.70 2.86 NA 0.00 7.14 0.00 7.94 NA 4.17 10.42 12.90 6.90 5.00 8.33 14.29 10.71 10.00 6.82 0.00 NA 7.41 10.00 NA 8.33 NA NA 11.11 NA 8.33 NA 4.17 2.00 NA 19.23 0.00 NA NA 0.00 NA 8.33 14.29 0.00 NA 10.00 NA 8.57 0.00 NA NA NA NA NA 2.70 NA NA NA K intron_retention CG31522,I_chr3R_270285_272146,I_chr3R_270285_272461,I_chr3R_271138_271887,I_chr3R_272255_272359,RI_chr3R_273677_279264 chr3R - chr3R_271138_272146 chr3R_271137_271138;chr3R_272146_272147 chr3R_271054_271137;chr3R_272147_272246 3.85 0.00 0.00 9.52 0.00 0.00 13.64 2.22 10.87 NA NA 3.70 NA 0.00 17.65 10.00 0.00 NA 9.52 0.00 NA 15.00 0.00 3.70 0.00 6.25 0.00 NA NA 4.35 NA NA NA 7.50 NA 10.53 3.85 0.00 12.12 0.00 NA 0.00 0.00 5.00 NA 11.11 4.76 13.33 9.26 5.00 5.13 NA NA 0.00 7.69 0.00 0.00 NA K intron_retention RpII215,I_chrX_11466174_11466223 chrX - chrX_11463320_11463918 chrX_11463319_11463320;chrX_11463918_11463919 chrX_11461076_11463319;chrX_11463919_11464438 2.91 2.45 2.58 4.50 2.31 2.05 3.63 1.92 1.86 2.91 1.43 2.68 7.63 0.91 3.41 4.23 1.65 1.54 4.67 4.15 2.27 2.39 2.03 3.41 1.78 1.27 2.43 7.11 10.98 1.63 2.86 6.78 3.38 3.20 2.91 0.98 0.56 1.90 1.26 2.82 8.70 2.20 3.51 1.83 13.04 6.80 4.42 6.49 3.46 5.13 2.22 4.42 5.49 7.69 3.85 4.95 5.19 4.35 K intron_retention CG1737 chrX + chrX_11247633_11247689 chrX_11247632_11247633;chrX_11247689_11247690 chrX_11245724_11247632;chrX_11247690_11248794 100.00 98.39 100.00 100.00 100.00 100.00 98.33 100.00 99.15 97.50 100.00 98.92 100.00 100.00 100.00 98.08 100.00 100.00 97.62 99.26 100.00 98.90 99.10 100.00 100.00 100.00 98.68 100.00 100.00 98.55 100.00 100.00 98.94 98.68 100.00 100.00 98.33 98.77 100.00 100.00 98.08 100.00 100.00 98.33 98.57 100.00 100.00 98.65 100.00 100.00 98.80 100.00 100.00 98.55 100.00 97.01 100.00 98.00 K intron_retention Art1 chr3R - chr3R_6613771_6613833 chr3R_6613770_6613771;chr3R_6613833_6613834 chr3R_6613495_6613770;chr3R_6613834_6613927 0.00 0.00 0.00 1.98 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor gw,I_chr4_672810_672930,I_chr4_679135_681671 chr4 - chr4_671657_672930 chr4_672810_672930 chr4_672931_673030;chr4_670618_671656 1.24 0.99 1.92 1.05 1.16 1.05 1.09 1.99 1.79 2.27 1.12 1.99 3.88 1.75 0.88 2.67 0.89 1.02 1.50 0.76 1.03 1.87 0.76 0.88 2.22 1.57 2.40 3.33 1.79 0.96 0.78 1.23 0.80 1.38 1.23 1.24 0.75 1.39 0.76 1.94 2.67 1.27 0.97 0.81 2.27 1.47 0.91 1.65 1.32 1.94 1.52 1.15 0.00 1.32 1.31 0.88 0.61 0.48 K jcn_only_AA CG5991 chr3R + chr3R_19876703_19877425;chr3R_19876703_19877421 chr3R_19876703_19877411 chr3R_19876688_19876702;chr3R_19877426_19877477 61.98 NA NA 66.67 NA NA 58.06 55.56 58.97 NA NA 62.50 NA NA 37.93 72.41 70.00 NA 68.00 44.44 NA NA NA NA NA 65.38 NA NA NA NA NA NA 68.00 61.76 NA 68.18 NA NA NA 60.53 73.91 62.79 59.09 NA NA 62.07 NA 60.87 65.22 NA 56.52 NA NA NA 54.29 NA NA 61.90 K intron_retention LamC chr2R - chr2R_10458817_10458964 chr2R_10458816_10458817;chr2R_10458964_10458965 chr2R_10458387_10458816;chr2R_10458965_10459687 48.48 28.89 62.50 56.76 65.38 62.07 66.67 55.00 67.24 31.58 80.00 56.90 63.16 60.00 62.07 72.41 76.47 92.86 54.17 66.67 86.67 34.21 48.94 48.48 44.00 81.48 41.18 25.00 29.41 39.39 65.22 23.08 55.17 65.00 56.25 40.91 44.93 36.96 33.90 35.29 22.22 59.65 55.00 28.33 9.38 17.14 26.92 44.12 65.91 8.24 43.40 44.00 33.33 7.69 72.00 16.67 8.33 36.36 K cassette CG17273,I_chr3R_16652066_16655997,REI_chr3R_16652421_16653701,I_chr3R_16653805_16654088 chr3R - chr3R_16652066_16655997 chr3R_16652066_16653701;chr3R_16653805_16655997 chr3R_16653702_16653804 chr3R_16651966_16652065;chr3R_16655998_16656097 99.35 99.33 99.26 99.07 99.67 99.69 99.42 99.59 99.86 99.35 99.66 99.69 99.64 99.61 100.00 99.75 99.61 99.62 99.67 99.87 99.64 99.17 98.92 99.54 97.72 99.37 98.66 98.71 97.47 99.18 99.71 98.72 99.69 99.59 98.77 98.53 99.40 98.76 98.69 99.03 98.81 99.41 99.62 99.04 98.39 99.58 99.00 99.06 98.89 99.10 98.90 99.18 99.67 99.76 99.19 99.22 100.00 98.92 K jcn_only_AA Adam,I_chr2R_5856741_5856974,I_chr2R_5856741_5857245,I_chr2R_5857058_5857250,I_chr2R_5857078_5857245 chr2R + chr2R_5857058_5857250 chr2R_5857058_5857245 chr2R_5856978_5857057;chr2R_5857251_5857345 100.00 99.60 100.00 99.70 100.00 100.00 100.00 100.00 99.79 99.13 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.46 98.91 100.00 99.66 100.00 99.71 100.00 100.00 100.00 100.00 99.68 100.00 99.49 99.79 100.00 100.00 99.83 99.29 100.00 99.49 99.41 100.00 99.75 99.69 100.00 100.00 99.70 98.98 100.00 100.00 100.00 100.00 100.00 99.74 100.00 K jcn_only_AD l(2)gl,I_chr2L_17150_19884,I_chr2L_17208_18260,RI_chr2L_17213_18330,I_chr2L_17213_21135,RI_chr2L_20021_20830,I_chr2L_20974_21065 chr2L - chr2L_17213_18330;chr2L_17213_19879 chr2L_17213_18025 chr2L_17113_17212 3.24 0.00 0.00 0.00 4.76 4.35 5.00 2.70 1.94 NA NA 0.00 0.00 0.00 0.00 3.03 0.00 4.17 5.77 1.75 NA 5.00 5.13 3.45 NA NA 8.33 NA 6.90 5.88 0.00 NA 24.14 4.41 0.00 NA 4.35 0.00 NA 14.29 NA 0.00 0.00 2.56 NA 4.00 NA 1.72 0.00 NA 5.71 4.35 NA NA 4.26 NA NA 4.55 K intron_retention gus,I_chr2R_1009158_1009345,RI_chr2R_1009158_1011540,I_chr2R_1009346_1015730 chr2R - chr2R_1009158_1009487 chr2R_1009157_1009158;chr2R_1009487_1009488 chr2R_1009058_1009157;chr2R_1009488_1009568 0.00 NA NA 0.00 NA NA 4.00 0.00 6.25 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA 15.38 NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA 9.09 NA NA NA NA NA NA 0.00 NA 12.50 NA NA NA 0.00 NA NA NA K alternative_donor CG9932,I_chr2L_13025498_13027193,I_chr2L_13031395_13035824 chr2L - chr2L_13025498_13027065;chr2L_13025498_13027344 chr2L_13025498_13026528 chr2L_13025398_13025497;chr2L_13027345_13027744 77.31 86.21 64.52 70.13 83.33 64.29 72.22 58.06 77.94 87.76 59.52 64.89 44.19 75.47 73.21 71.79 64.58 77.08 60.71 74.56 70.45 82.61 80.81 84.06 84.31 78.05 77.92 81.58 75.93 75.64 69.81 74.36 77.31 74.47 75.38 83.33 85.00 91.53 83.96 95.41 75.56 72.13 83.78 78.21 76.79 79.69 81.25 78.00 72.22 80.65 81.25 83.33 82.98 81.08 69.35 80.85 83.33 72.00 K jcn_only_AA CG5793,I_chr3R_16953555_16953842 chr3R + chr3R_16953940_16954089 chr3R_16953940_16954068 chr3R_16953843_16953939;chr3R_16954090_16954215 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 98.61 NA 95.65 100.00 100.00 100.00 100.00 100.00 100.00 96.30 96.67 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG4980 chr3R - chr3R_23747854_23747920 chr3R_23747853_23747854;chr3R_23747920_23747921 chr3R_23746970_23747853;chr3R_23747921_23748082 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 3.28 0.00 0.00 0.00 NA 4.88 NA 5.97 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 1.06 0.00 N alternative_acceptor Hsc70-5 chr2R - chr2R_10143221_10143338 chr2R_10143254_10143338 chr2R_10143339_10143532;chr2R_10143174_10143220 0.27 0.00 0.51 0.00 0.00 0.00 1.50 0.68 0.52 0.50 0.85 0.30 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.27 0.57 0.88 0.00 0.29 0.32 1.27 0.00 0.45 0.00 0.95 0.00 0.00 0.55 0.29 0.00 0.00 0.41 0.00 0.26 0.00 0.30 0.53 0.92 0.00 1.27 0.69 0.80 0.36 1.15 0.00 0.72 0.00 0.54 0.00 0.00 K intron_retention CG3191,CG3091,I_chrX_2147635_2147990 chrX - chrX_2145388_2145704 chrX_2145387_2145388;chrX_2145704_2145705 chrX_2145228_2145387;chrX_2145705_2145851 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 17.65 NA NA NA NA NA NA NA NA NA 0.00 14.29 NA NA NA NA NA NA 0.00 23.08 NA NA NA 15.38 21.43 NA 9.09 NA NA NA NA NA NA NA NA NA 12.50 K alternative_donor RpL15 chr3LHet + chr3LHet_2398018_2398127;chr3LHet_2397859_2398127;chr3LHet_2397925_2398127;chr3LHet_2397992_2398127;chr3LHet_2398060_2398127;chr3LHet_2398002_2398127;chr3LHet_2397820_2398127;chr3LHet_2398053_2398127 chr3LHet_2397841_2398127 chr3LHet_2398128_2398454;chr3LHet_2397802_2397819 0.00 0.00 0.00 0.69 0.00 0.00 1.39 0.73 0.00 4.17 0.00 0.00 0.00 0.00 1.56 0.00 1.23 3.33 1.04 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 1.89 0.00 0.46 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.22 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 K intron_retention CG5537,I_chr3L_5804425_5804485 chr3L + chr3L_5804421_5804485 chr3L_5804420_5804421;chr3L_5804485_5804486 chr3L_5804325_5804420;chr3L_5804486_5804585 6.98 3.57 2.00 13.89 8.70 9.86 13.89 5.26 6.21 13.73 8.82 4.11 3.33 6.56 9.30 5.32 4.17 4.82 5.41 5.05 5.19 36.67 8.40 6.76 11.59 16.67 11.50 6.02 17.39 4.44 14.43 6.98 13.54 4.72 7.89 23.08 7.38 5.43 6.13 7.14 15.15 7.38 3.39 5.50 6.62 8.33 8.09 11.70 3.73 6.96 9.56 7.46 3.54 6.56 4.95 7.14 5.92 8.18 K alternative_acceptor Eno,EI_chr2L_1727403_1727645,I_chr2L_1728229_1728302 chr2L - chr2L_1728229_1728302 chr2L_1728233_1728302 chr2L_1728303_1728402;chr2L_1728129_1728228 76.47 91.67 80.00 75.00 NA NA 58.33 92.31 68.75 NA NA 82.14 NA 66.67 70.00 83.33 NA NA 91.67 73.33 NA NA 90.00 69.23 NA NA NA NA 60.00 88.89 73.68 NA 90.00 75.00 NA NA NA NA NA 62.50 NA 76.47 72.73 80.00 87.50 72.73 75.00 71.43 80.00 NA 83.33 NA NA 87.50 88.89 NA 87.50 64.29 K alternative_donor Trn chr3L + chr3L_6186644_6187144 chr3L_6186723_6187144 chr3L_6187145_6187250;chr3L_6186603_6186643 93.33 88.24 95.00 93.33 90.91 95.65 90.00 97.30 92.19 87.50 93.75 97.37 80.95 95.45 93.33 93.88 91.67 81.82 91.67 93.62 95.24 97.30 100.00 90.00 90.00 95.83 92.86 95.00 90.91 90.91 89.29 NA 100.00 84.21 93.33 100.00 94.74 88.89 83.33 100.00 NA 95.12 80.95 90.48 NA NA 85.71 93.33 100.00 NA 93.33 100.00 100.00 NA 92.00 NA NA 83.33 K intron_retention Cp1,Aats-phe chr2R + chr2R_9854475_9854534 chr2R_9854474_9854475;chr2R_9854534_9854535 chr2R_9854260_9854474;chr2R_9854535_9855489 0.30 0.24 0.13 0.24 0.28 0.26 0.23 0.27 0.32 0.31 0.06 0.44 0.31 0.44 0.31 0.36 0.31 0.28 0.29 0.17 0.33 0.30 0.32 0.30 0.18 0.08 0.60 0.79 0.34 0.39 0.08 0.16 0.30 0.35 0.38 0.48 0.28 0.26 0.25 0.25 0.39 0.19 0.14 0.22 0.26 0.39 0.41 0.30 0.32 0.43 0.32 0.22 0.13 0.26 0.16 0.30 0.41 0.23 N jcn_only_AA CG8790 chr3R + chr3R_9190952_9191016;chr3R_9190952_9193460;chr3R_9190952_9193295 chr3R_9190952_9193285 chr3R_9190661_9190951 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention aux chr3R + chr3R_52182_52251 chr3R_52181_52182;chr3R_52251_52252 chr3R_51256_52181;chr3R_52252_52413 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 2.99 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 2.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 K alternative_donor opa1-like,I_chr2R_10119470_10120234,I_chr2R_10121848_10121900,I_chr2R_10122128_10122197,I_chr2R_10122334_10122393 chr2R - chr2R_10119470_10120220;chr2R_10119470_10120229 chr2R_10119470_10120234 chr2R_10119370_10119469;chr2R_10120235_10120334 0.00 0.00 2.33 1.20 2.04 0.00 1.41 1.43 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 1.69 2.50 0.00 2.56 3.12 0.00 0.00 1.49 0.00 2.22 1.19 0.00 0.00 0.00 8.33 1.06 0.00 1.56 3.12 2.27 1.59 3.23 0.00 0.00 1.43 0.00 0.00 0.00 1.79 1.79 0.00 0.00 K jcn_only_AA CG3308,I_chr3R_17098558_17099131,I_chr3R_17099005_17099062 chr3R - chr3R_17098558_17099062 chr3R_17099005_17099062 chr3R_17099063_17099162;chr3R_17098458_17098557 0.54 0.00 0.76 0.51 1.14 0.00 1.97 0.00 0.33 1.43 0.00 0.00 0.00 0.00 0.75 0.66 0.00 2.34 0.84 0.00 0.00 1.89 0.00 1.03 0.00 1.65 0.00 1.02 1.57 0.00 1.55 0.00 0.00 0.00 0.74 1.44 0.00 0.52 1.77 0.54 0.76 0.39 1.01 0.61 0.66 0.62 0.93 0.43 0.45 0.00 0.00 1.03 0.00 0.74 0.56 0.00 0.71 1.12 K multi_cassette CG17471,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1216718_1217383 chr4_1216718_1216813;chr4_1216889_1216945;chr4_1217104_1217383 chr4_1216814_1216888;chr4_1216946_1217103 chr4_1216618_1216717;chr4_1217384_1217398 82.57 75.00 66.67 59.09 83.33 62.50 84.21 92.00 81.25 NA NA 70.00 100.00 60.00 70.00 86.36 100.00 83.33 75.00 84.62 83.33 NA 100.00 100.00 NA NA 100.00 NA NA NA 73.33 NA NA 76.47 85.71 NA NA NA NA 85.71 83.33 81.82 90.00 55.56 75.00 66.67 NA 85.71 78.26 100.00 100.00 80.00 NA NA 81.82 75.00 100.00 80.00 K intron_retention CG14411 chrX + chrX_14726994_14727176 chrX_14726993_14726994;chrX_14727176_14727177 chrX_14726671_14726993;chrX_14727177_14730337 0.00 1.16 1.61 3.28 0.00 0.00 2.90 1.27 2.08 0.00 0.00 2.94 0.00 0.00 3.57 0.00 5.26 0.00 3.77 4.60 0.00 2.38 0.00 0.00 1.82 0.00 0.76 5.08 1.68 0.00 0.00 0.00 3.05 0.00 0.00 0.00 0.00 0.00 0.00 1.65 3.96 0.00 0.00 0.00 0.88 2.34 0.00 3.23 1.11 0.86 0.00 0.00 0.00 0.00 0.00 3.09 2.70 3.57 N alternative_donor TSG101 chr3L + chr3L_16835972_16836255 chr3L_16835977_16836255 chr3L_16836256_16836333;chr3L_16835892_16835971 100.00 NA NA NA NA NA 100.00 100.00 100.00 NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 45.45 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 NA 100.00 NA NA NA NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 NA K intron_retention CG8451 chr2L - chr2L_8203247_8203313 chr2L_8203246_8203247;chr2L_8203313_8203314 chr2L_8203087_8203246;chr2L_8203314_8203445 22.73 25.00 16.67 14.81 23.08 20.00 28.95 18.52 20.97 33.33 23.08 22.73 15.79 27.78 21.62 16.28 15.38 19.35 21.05 14.81 13.79 22.73 25.58 28.57 21.74 20.83 22.22 NA 36.84 25.00 23.08 24.14 6.25 14.06 18.52 21.05 24.14 23.08 21.43 23.68 34.62 13.51 25.00 26.00 39.39 23.26 43.75 20.51 16.42 47.83 24.14 19.05 NA 30.77 17.31 42.31 27.27 22.22 K intron_retention zip,I_chr2R_20878796_20879147 chr2R - chr2R_20898140_20898898 chr2R_20898139_20898140;chr2R_20898898_20898899 chr2R_20897903_20898139;chr2R_20898899_20898979 17.18 16.95 13.30 14.18 19.11 14.12 20.95 12.89 17.44 15.24 16.00 13.71 15.13 12.50 17.04 15.61 17.62 12.72 13.79 20.12 12.82 33.33 18.87 27.78 30.00 13.89 39.29 14.67 22.73 27.32 11.83 19.88 21.13 14.98 13.33 33.96 19.35 28.57 19.67 17.19 24.24 14.77 13.04 17.17 21.65 15.90 14.29 17.15 12.53 25.93 22.45 18.18 17.95 NA 14.05 18.92 17.31 17.31 K cassette Xrp1,I_chr3R_14741648_14750799,I_chr3R_14750298_14750799 chr3R + chr3R_14745235_14750799 chr3R_14745235_14746134;chr3R_14747042_14750799 chr3R_14746135_14747041 chr3R_14745145_14745234;chr3R_14750800_14750899 97.11 96.93 98.33 96.05 97.03 97.05 90.02 92.63 95.91 98.50 93.44 96.36 94.60 97.10 96.67 96.58 96.48 96.69 95.56 97.11 95.21 98.82 98.33 98.66 97.19 96.82 96.89 97.01 97.93 97.89 98.77 97.76 99.20 94.90 97.27 98.82 99.08 98.61 99.02 97.36 97.38 96.71 96.27 97.78 99.28 97.43 98.17 98.05 94.83 97.01 96.53 97.32 98.34 97.87 96.23 98.52 95.02 98.61 K intron_retention CG18317,RI_chr2L_1718492_1723881 chr2L - chr2L_1717816_1717877 chr2L_1717815_1717816;chr2L_1717877_1717878 chr2L_1717598_1717815;chr2L_1717878_1718151 0.00 0.00 0.00 3.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.26 7.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17389985_17394826 chr2R_17389984_17389985;chr2R_17394826_17394827 chr2R_17389891_17389984;chr2R_17394827_17394906 36.06 NA NA 30.77 NA NA 33.33 33.33 36.84 NA NA 33.33 NA 33.33 NA 38.46 NA NA NA NA NA 35.29 NA NA NA NA NA NA NA NA NA NA NA 38.46 NA NA NA NA NA NA NA NA NA 42.86 NA NA NA NA 43.75 NA 41.67 NA NA NA NA NA NA NA K cassette Dscam,I_chr2R_3237222_3249222,I_chr2R_3238411_3249222,I_chr2R_3238587_3249222,CEF_chr2R_3238803_3249222,I_chr2R_3239090_3249222,FI_chr2R_3239545_3249222,F_chr2R_3240528_3249222,FI_chr2R_3241198_3249222,FI_chr2R_3242511_3249222,FI_chr2R_3242716_3249222,F_chr2R_3244156_3249222,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3236481_3249222 chr2R_3236481_3248030;chr2R_3248155_3249222 chr2R_3248031_3248154 chr2R_3236381_3236480;chr2R_3249223_3249322 50.00 NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA Hrb98DE,I_chr3R_24425722_24428493,I_chr3R_24426291_24426781,RI_chr3R_24429041_24431183 chr3R + chr3R_24426291_24426439 chr3R_24426291_24426427 chr3R_24426191_24426290;chr3R_24426440_24426915 43.78 42.55 47.69 45.82 43.96 45.56 37.35 53.44 43.20 43.48 42.11 43.35 39.57 43.24 44.50 47.12 45.54 46.53 49.65 43.38 NA 42.55 39.46 44.08 37.98 62.36 41.63 34.59 45.88 47.70 43.61 44.93 47.26 52.51 41.38 49.57 42.11 39.83 41.99 41.35 46.38 46.00 52.50 39.11 49.74 45.12 36.49 51.14 44.44 41.71 42.32 50.51 37.58 38.50 46.93 41.80 42.65 44.49 K intron_retention eIF4G,E_chr4_936686_936751,I_chr4_948813_950447 chr4 - chr4_936686_936746 chr4_936685_936686;chr4_936746_936747 chr4_936586_936685;chr4_936747_936893 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17180812_17181479 chr3R - chr3R_17180417_17200781 chr3R_17180417_17180695;chr3R_17180812_17200781 chr3R_17180696_17180811 chr3R_17180195_17180416;chr3R_17200782_17200881 100.00 100.00 100.00 100.00 100.00 NA 88.89 100.00 100.00 NA 100.00 100.00 NA 85.71 100.00 100.00 NA NA 100.00 100.00 100.00 NA 94.12 93.33 100.00 NA 100.00 NA 100.00 100.00 90.91 90.91 90.00 90.91 90.00 100.00 90.91 100.00 90.91 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 94.12 100.00 100.00 92.86 100.00 90.91 93.33 100.00 K alternative_donor CG32163 chr3L + chr3L_16580348_16580609;chr3L_16580557_16580609 chr3L_16580506_16580609 chr3L_16580610_16580996;chr3L_16580335_16580347 0.00 0.00 8.33 0.00 20.00 0.00 21.05 21.43 19.05 NA 0.00 21.43 0.00 16.67 0.00 5.26 14.29 0.00 6.67 7.69 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 25.00 NA 9.09 11.11 NA 7.14 NA NA 0.00 0.00 0.00 0.00 NA 6.25 20.00 0.00 14.29 0.00 0.00 NA 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 7.14 K intron_retention CG17665 chr2R - chr2R_124362_124418 chr2R_124361_124362;chr2R_124418_124419 chr2R_124204_124361;chr2R_124419_124591 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 8.33 9.52 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA KdelR,CG5188 chr2L + chr2L_10427004_10427075 chr2L_10427004_10427052 chr2L_10426867_10427003;chr2L_10427076_10428159 0.62 1.24 0.52 0.39 0.63 0.32 1.31 0.40 0.73 0.45 0.65 0.64 0.57 1.62 1.14 0.78 0.38 0.59 0.79 0.65 0.53 0.37 1.16 1.41 1.76 0.54 1.83 7.82 0.00 0.00 1.40 0.00 0.56 0.00 1.38 0.67 0.72 0.28 0.62 0.58 1.28 0.45 0.75 0.51 0.92 0.81 0.75 1.59 0.45 0.62 0.50 0.28 0.80 0.00 0.90 0.00 0.45 0.00 K intron_retention CG30001 chr2R - chr2R_5709947_5710009 chr2R_5709946_5709947;chr2R_5710009_5710010 chr2R_5709852_5709946;chr2R_5710010_5710119 32.05 NA NA 19.05 NA NA NA 30.77 NA NA NA NA NA NA NA NA NA NA NA 35.71 NA NA 30.77 NA NA NA NA NA NA NA 61.11 NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention BEAF-32,I_chr2R_10658570_10659304,noncoding_6875 chr2R + chr2R_10659148_10659304 chr2R_10659147_10659148;chr2R_10659304_10659305 chr2R_10658827_10659147;chr2R_10659305_10659323 2.27 0.00 0.00 5.56 5.00 0.00 4.35 6.52 2.90 0.00 2.86 5.63 0.00 10.53 4.55 10.71 0.00 0.00 0.00 4.65 4.65 0.00 0.00 3.57 5.71 0.00 0.00 3.12 0.00 0.00 14.29 0.00 4.29 11.63 0.00 0.00 0.00 0.00 1.92 0.00 0.00 2.82 6.90 0.00 4.17 0.00 2.38 0.00 8.06 2.90 0.00 5.71 3.28 2.27 6.67 2.22 7.27 0.00 K alternative_donor CG40485 chrX - chrX_22363297_22363599 chrX_22363297_22363595 chrX_22363005_22363296;chrX_22363600_22364196 3.45 4.00 0.00 NA NA 0.00 0.00 6.67 6.67 NA 0.00 0.00 NA NA 4.00 3.45 NA 4.17 5.00 0.00 NA 4.55 3.85 3.85 NA 6.67 0.00 0.00 6.25 0.00 3.45 0.00 2.86 3.45 0.00 NA 2.56 0.00 2.56 2.44 6.67 8.33 NA 3.03 0.00 6.90 2.27 15.00 0.00 10.71 3.45 4.35 0.00 0.00 4.35 5.56 2.33 7.41 K intron_retention RI_chr2R_16552969_16554423,exu chr2R - chr2R_16555788_16556079 chr2R_16555787_16555788;chr2R_16556079_16556080 chr2R_16554924_16555787;chr2R_16556080_16557400 24.41 7.69 NA 63.64 NA NA NA 23.81 18.18 NA NA 40.00 NA 21.43 25.00 36.84 NA NA 17.65 50.00 14.29 NA NA 14.29 NA NA 46.15 NA NA NA 43.75 NA NA 22.22 NA NA 11.11 NA NA 28.57 NA 25.00 NA NA NA 19.05 21.43 NA 18.18 50.00 10.00 NA NA 46.67 25.00 15.00 25.00 36.36 K cassette Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103,I_chr3L_8463933_8464047 chr3L + chr3L_8463584_8464251 chr3L_8463584_8463854;chr3L_8464140_8464251 chr3L_8463855_8464139 chr3L_8463540_8463583;chr3L_8464252_8465061 95.92 94.44 100.00 87.50 95.00 94.74 96.00 100.00 97.96 100.00 100.00 93.88 95.65 96.00 95.45 100.00 96.30 90.00 97.06 100.00 100.00 94.74 93.02 100.00 94.44 100.00 95.65 100.00 91.43 93.33 93.10 94.12 96.55 100.00 95.65 90.00 96.67 95.45 89.29 95.92 95.83 98.04 100.00 97.30 100.00 100.00 95.00 100.00 95.83 95.45 96.77 95.45 100.00 100.00 100.00 95.65 90.48 94.74 N multi_cassette CG17528,I_chr2R_705620_705713,I_chr2R_705649_705720,RI_chr2R_706735_711409,I_chr2R_706735_711443,I_chr2R_707374_711443 chr2R - chr2R_705440_711615 chr2R_705440_705502;chr2R_705649_705713;chr2R_706735_711615 chr2R_705503_705648;chr2R_705714_706734 chr2R_705290_705439;chr2R_711616_711627 100.00 100.00 100.00 52.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA ena chr2R + chr2R_15047541_15047756;chr2R_15047541_15047681;chr2R_15047541_15047684 chr2R_15047541_15047753 chr2R_15047496_15047540;chr2R_15047757_15048407 3.36 3.15 6.25 3.02 4.12 4.26 2.78 4.96 4.07 3.36 3.85 1.57 4.02 2.05 3.37 2.84 3.72 6.45 0.40 4.18 6.20 1.17 2.60 2.68 2.75 1.97 1.77 4.08 3.96 4.13 3.43 2.55 2.99 4.43 2.55 2.36 4.76 1.49 3.79 2.87 1.34 4.20 3.19 2.62 2.76 0.94 3.18 4.65 5.12 2.91 3.99 4.64 5.37 3.55 2.50 2.65 3.90 4.48 K multi_cassette CG18659,E_chr2R_5011363_5019110,RI_chr2R_5013572_5014531,I_chr2R_5016147_5016997 chr2R - chr2R_5011651_5014923 chr2R_5011651_5012248;chr2R_5012726_5013055;chr2R_5013572_5014923 chr2R_5012249_5012725;chr2R_5013056_5013571 chr2R_5011194_5011650;chr2R_5014924_5015382 98.21 98.28 97.37 86.27 100.00 97.22 96.15 97.78 97.47 100.00 96.00 98.78 100.00 100.00 97.50 100.00 100.00 100.00 100.00 96.88 86.11 83.75 95.51 98.68 98.31 96.97 98.61 97.18 98.67 96.77 100.00 98.21 95.51 98.08 96.67 98.44 98.17 98.44 96.49 98.97 95.59 96.77 96.15 96.92 100.00 98.81 98.63 100.00 98.61 98.67 94.59 97.30 100.00 93.75 97.56 98.28 98.33 98.59 K intron_retention CG30423 chr2R - chr2R_20763117_20763181 chr2R_20763116_20763117;chr2R_20763181_20763182 chr2R_20762861_20763116;chr2R_20763182_20763182 22.22 15.00 18.18 29.17 NA NA 35.48 10.81 15.00 NA 22.22 20.59 NA 27.78 9.09 15.15 0.00 17.39 16.67 14.00 22.22 33.33 17.86 22.22 24.00 14.29 17.50 7.41 38.89 NA 24.66 26.67 28.57 13.79 20.00 36.84 22.22 NA 31.58 25.00 26.67 24.14 13.33 25.00 36.84 39.29 30.43 36.36 21.62 23.53 22.22 NA 20.00 28.57 20.00 25.00 18.75 22.86 K intron_retention CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042888_5042960 chr2L_5042887_5042888;chr2L_5042960_5042961 chr2L_5042835_5042887;chr2L_5042961_5043016 6.25 NA NA 13.33 NA NA 14.29 14.29 5.00 NA NA 5.88 NA NA 14.29 NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA 6.25 10.00 NA NA NA NA NA 0.00 6.25 9.09 NA NA NA 0.00 NA 12.50 0.00 NA 15.00 NA NA NA NA NA NA 3.70 K alternative_donor RhoGDI chr3L + chr3L_19922009_19923914;chr3L_19921911_19923914 chr3L_19921875_19923914 chr3L_19923915_19924114;chr3L_19921868_19921874 0.00 2.00 0.00 1.11 0.00 2.08 0.00 2.21 1.32 0.00 1.67 0.96 2.44 0.00 1.35 1.61 1.64 2.17 1.30 1.03 0.00 2.33 0.00 0.00 0.00 3.51 0.00 0.00 0.00 0.00 1.56 5.00 11.11 3.54 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 4.76 0.00 2.94 4.76 0.00 0.00 0.00 0.00 3.57 0.00 2.78 0.00 0.00 0.00 K cassette CG16791 chr3R - chr3R_17149949_17163398 chr3R_17149949_17160425;chr3R_17160491_17163398 chr3R_17160426_17160490 chr3R_17149943_17149948;chr3R_17163399_17163498 90.00 88.89 92.86 88.00 92.86 100.00 100.00 100.00 90.91 100.00 92.31 94.44 88.89 83.33 100.00 84.62 87.50 90.00 88.24 100.00 100.00 55.56 100.00 92.86 NA 83.33 90.00 NA 60.00 86.67 85.71 76.92 85.71 95.65 90.00 86.67 85.71 90.91 90.00 84.21 81.82 88.89 87.50 91.67 68.42 94.12 81.82 84.00 88.24 100.00 73.33 NA 100.00 90.00 93.33 NA 83.33 92.00 K intron_retention MB8.chr3R.pasa.66,alpha-Est10,I_chr3R_3314337_3319450 chr3R - chr3R_3313949_3314023 chr3R_3313948_3313949;chr3R_3314023_3314024 chr3R_3313237_3313948;chr3R_3314024_3314336 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 17.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_927771_929704,CG32021,RI_chr4_928180_928245,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_928180_928245 chr4_928179_928180;chr4_928245_928246 chr4_928093_928179;chr4_928246_928314 70.18 66.67 72.73 89.39 73.08 66.67 48.57 84.21 80.56 59.46 79.17 76.39 83.87 81.82 85.42 71.74 73.33 67.86 84.62 75.71 68.97 82.88 73.44 66.00 65.00 84.38 82.80 86.67 78.18 59.62 62.07 72.00 81.67 70.18 67.57 64.15 61.54 61.36 55.17 60.94 65.79 68.66 70.97 59.46 78.12 59.57 67.86 63.93 77.61 62.00 65.00 65.71 70.83 61.90 72.09 60.61 67.74 79.41 N jcn_only_AA CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789733_9789790;chr2L_9789694_9789790;chr2L_9789718_9789790;chr2L_9789751_9789790;chr2L_9789598_9789790 chr2L_9789740_9789790 chr2L_9789791_9789832;chr2L_9789594_9789597 9.27 9.09 8.02 10.09 6.73 8.70 7.17 10.30 9.27 8.62 14.10 12.61 7.96 8.78 8.67 12.95 6.78 9.57 10.86 9.30 14.29 14.41 8.75 10.78 17.14 12.22 5.06 10.26 9.09 8.91 9.27 11.39 9.52 8.66 7.79 2.08 7.41 15.15 9.17 9.19 11.50 6.91 9.32 13.43 6.02 6.06 11.94 7.30 13.06 6.45 7.27 7.78 9.62 7.41 12.11 13.64 12.28 10.08 K intron_retention CG2225,Ef2b,I_chr2L_21681559_21681619,I_chr2L_21681559_21681621,I_chr2L_21681559_21681649,I_chr2L_21681559_21681721,I_chr2L_21681559_21682037,I_chr2L_21681559_21737600,I_chr2L_21681561_21682041,I_chr2L_21681805_21682038 chr2L - chr2L_21681559_21681721 chr2L_21681558_21681559;chr2L_21681721_21681722 chr2L_21681461_21681558;chr2L_21681722_21681749 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 77.78 55.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention I_chr3L_11555186_11555746,CG7394 chr3L + chr3L_11555838_11555960 chr3L_11555837_11555838;chr3L_11555960_11555961 chr3L_11555837_11555837;chr3L_11555961_11556200 12.31 9.68 8.89 13.56 4.17 5.00 12.31 5.08 7.00 15.38 5.77 9.86 6.45 8.57 3.92 8.70 5.41 5.00 7.41 8.82 9.52 40.00 26.09 17.65 19.05 16.28 27.27 47.37 28.57 16.67 7.41 22.22 NA 3.57 NA 53.85 13.89 16.67 21.88 17.86 NA 5.26 9.68 NA 11.76 22.22 22.73 15.79 8.57 11.76 17.39 17.65 NA NA 6.12 36.84 13.79 15.79 K cassette Zyx102EF,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1080463_1081398;chr4_1080463_1081366 chr4_1080463_1081118;chr4_1081261_1081366,chr4_1081261_1081398 chr4_1081119_1081260 chr4_1080446_1080462;chr4_1081399_1081402 100.00 100.00 100.00 81.82 100.00 100.00 84.00 100.00 96.55 NA 100.00 82.61 100.00 91.67 100.00 100.00 88.89 87.50 90.91 95.83 100.00 90.00 100.00 100.00 100.00 90.00 100.00 100.00 85.71 87.50 100.00 100.00 100.00 95.45 100.00 87.50 100.00 85.71 100.00 100.00 100.00 95.24 90.91 100.00 NA 100.00 90.00 100.00 100.00 90.91 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG34349,I_chr3R_20889373_20889414 chr3R + chr3R_20889839_20889899 chr3R_20889838_20889839;chr3R_20889899_20889900 chr3R_20889657_20889838;chr3R_20889900_20889991 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 3.45 0.00 7.14 0.00 0.00 0.00 NA 3.70 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 9.52 K intron_retention CG31729,I_chr2L_13291292_13292541 chr2L + chr2L_13296746_13297618 chr2L_13296745_13296746;chr2L_13297618_13297619 chr2L_13296222_13296745;chr2L_13297619_13298456 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 2.56 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8107439_8107747 chr2L_8107438_8107439;chr2L_8107747_8107748 chr2L_8107238_8107438;chr2L_8107748_8107847 0.12 0.00 0.00 0.12 0.00 0.00 0.00 0.34 0.08 0.00 0.00 0.00 0.43 0.51 0.38 0.25 0.00 0.00 0.41 0.38 0.00 0.20 0.26 0.51 0.40 0.00 0.52 1.14 0.45 0.00 0.00 0.40 0.00 0.13 0.00 0.41 0.13 0.00 0.12 0.34 0.00 0.20 0.00 0.50 0.00 0.47 0.00 0.67 0.22 0.00 0.25 0.42 0.00 0.00 0.00 0.00 0.00 0.67 K intron_retention CG7627 chr2L - chr2L_8358353_8359414 chr2L_8358352_8358353;chr2L_8359414_8359415 chr2L_8357943_8358352;chr2L_8359415_8359570 100.00 98.28 100.00 98.90 100.00 100.00 99.02 98.88 98.58 100.00 100.00 98.21 100.00 100.00 100.00 98.55 100.00 98.31 98.55 100.00 100.00 99.24 99.06 100.00 100.00 100.00 100.00 98.44 100.00 100.00 98.70 100.00 98.77 99.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 99.14 100.00 100.00 96.43 100.00 97.50 95.65 99.03 98.25 97.70 98.11 100.00 97.14 100.00 100.00 97.92 100.00 K intron_retention Bap170 chr2R + chr2R_2527008_2527070 chr2R_2527007_2527008;chr2R_2527070_2527071 chr2R_2525686_2527007;chr2R_2527071_2528492 98.00 97.92 100.00 98.33 100.00 97.50 96.00 98.18 96.67 100.00 88.57 100.00 96.30 97.56 97.50 100.00 100.00 97.56 100.00 98.08 100.00 97.50 96.81 100.00 98.04 97.37 98.41 93.94 100.00 97.50 97.50 96.88 97.83 98.31 100.00 100.00 98.85 100.00 98.78 97.70 100.00 98.48 96.43 98.00 97.30 97.56 93.62 97.92 98.55 96.23 100.00 97.44 100.00 95.92 97.87 100.00 98.51 96.30 K jcn_only_AA CG14425,Sxl,CG14425_Sxl,CEF_chrX_6984538_6992033 chrX - chrX_6990969_6991030;chrX_6986156_6991030 chrX_6986204_6991030 chrX_6991031_6991040 11.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG5037 chr2L + chr2L_10331931_10331987 chr2L_10331931_10331971 chr2L_10331854_10331930;chr2L_10331988_10332345 1.92 2.44 0.00 1.92 0.00 0.00 3.12 0.00 1.16 0.00 3.57 4.00 0.00 2.13 0.00 0.00 0.00 5.26 0.00 2.88 5.71 0.00 1.92 2.00 0.00 2.13 2.94 8.70 4.17 0.00 1.61 5.00 0.00 1.92 0.00 9.09 1.72 0.00 1.92 4.92 0.00 2.86 3.45 1.79 5.71 2.70 4.76 0.00 2.44 6.82 0.00 0.00 10.53 0.00 4.65 2.63 0.00 0.00 K alternative_acceptor Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046129;chr3L_16045251_16046108;chr3L_16045251_16045854;chr3L_16045251_16046111 chr3L_16045251_16046104 chr3L_16045216_16045250;chr3L_16046130_16046204 46.15 48.00 50.00 55.10 41.18 53.85 48.94 47.92 46.97 36.84 42.86 50.00 39.47 53.33 48.65 44.68 41.94 40.00 52.17 42.62 45.45 43.48 45.95 42.86 38.89 61.29 46.43 29.63 50.00 47.62 47.22 50.00 46.38 56.36 53.12 34.78 40.91 47.37 33.33 46.15 45.83 52.63 48.15 48.15 42.86 44.44 50.00 48.48 45.00 41.67 44.83 35.71 50.00 37.50 43.90 46.15 33.33 50.00 K alternative_donor CYLD chr2L - chr2L_10299221_10299761 chr2L_10299221_10299746 chr2L_10299044_10299220;chr2L_10299762_10299827 0.00 NA NA 5.56 NA NA 2.94 0.00 3.23 NA NA 0.00 NA 10.53 NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA N jcn_only_AD blow,RI_chr2R_3470434_3470776 chr2R - chr2R_3472863_3474487 chr2R_3472863_3474436 chr2R_3472561_3472862;chr2R_3474488_3474581 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 73.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Nop60B,I_chr2R_20063248_20063949,snoRNA:Psi18S-1820,F_chr2R_20073291_20073744 chr2R + chr2R_20063715_20063949 chr2R_20063714_20063715;chr2R_20063949_20063950 chr2R_20063615_20063714;chr2R_20063950_20064049 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.48 0.44 0.43 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.18 0.00 0.00 0.19 0.42 0.00 0.45 1.29 2.33 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.35 0.00 0.33 1.01 0.00 0.00 0.46 0.77 0.00 0.00 0.00 0.00 0.35 0.43 0.62 0.36 0.00 0.00 0.57 0.72 0.62 0.00 K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,RI_chr3R_27801288_27801517,I_chr3R_27801288_27801596 chr3R - chr3R_27784850_27805244 chr3R_27784850_27795477;chr3R_27795508_27801169;chr3R_27801288_27801517;chr3R_27801688_27805244 chr3R_27795478_27795507;chr3R_27801170_27801287;chr3R_27801518_27801687 chr3R_27784757_27784849;chr3R_27805245_27805341 60.00 66.67 75.00 88.89 NA 40.00 NA 50.00 55.56 NA 75.00 81.82 NA 50.00 60.00 55.56 NA 50.00 50.00 62.50 60.00 NA NA NA NA 50.00 25.00 NA NA NA 75.00 NA NA 71.43 NA NA NA NA NA 60.00 NA 50.00 66.67 NA NA NA NA 60.00 55.56 NA 66.67 NA NA NA 50.00 NA NA 66.67 K intron_retention CG31689,I_chr2L_2730373_2736310,I_chr2L_2736431_2737036 chr2L + chr2L_2737901_2738074 chr2L_2737900_2737901;chr2L_2738074_2738075 chr2L_2737662_2737900;chr2L_2738075_2738382 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.07 0.00 2.15 0.00 2.61 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA I_chr2R_7778750_7781059,I_chr2R_7778971_7781059,Ef1alpha48D,I_chr2R_7779690_7780997,I_chr2R_7779690_7781065,I_chr2R_7779690_7783075,I_chr2R_7779719_7781059,I_chr2R_7779813_7781059,I_chr2R_7779892_7781059,EF_chr2R_7779896_7781065,I_chr2R_7780542_7781059,I_chr2R_7780580_7781059,snoRNA:Me28S-A1322,I_chr2R_7780840_7781059,I_chr2R_7780877_7781059,RI_chr2R_7781135_7783075 chr2R + chr2R_7779690_7781065 chr2R_7779690_7781059 chr2R_7779622_7779689;chr2R_7781066_7781097 99.98 99.97 99.99 99.97 99.98 99.98 99.98 99.98 99.98 100.00 99.98 99.98 99.97 99.97 99.98 99.97 99.99 99.95 99.92 99.99 99.99 100.00 99.99 99.99 99.96 99.96 99.97 99.99 99.99 100.00 99.96 99.98 99.99 99.97 99.97 99.96 99.97 99.98 99.98 99.98 100.00 99.98 100.00 99.99 99.98 99.99 99.98 100.00 99.97 100.00 99.97 99.97 99.97 99.96 99.99 99.96 99.98 99.96 K alternative_acceptor baf,I_chr2L_8029734_8029787 chr2L + chr2L_8029734_8029815 chr2L_8029734_8029787 chr2L_8029634_8029733;chr2L_8029816_8029887 0.00 0.00 0.00 0.15 0.00 0.26 0.00 0.30 0.10 0.00 0.00 0.14 0.00 0.00 0.00 0.19 0.28 0.00 0.44 0.00 0.00 0.31 0.00 0.00 0.00 0.42 0.31 0.19 0.00 0.00 0.45 0.00 0.12 0.16 0.00 0.00 0.13 0.00 0.00 0.10 0.30 0.11 0.00 0.15 0.00 0.12 0.00 0.16 0.25 0.00 0.00 0.22 0.00 0.00 0.39 0.30 0.00 0.00 K alternative_donor tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_560576_560886;chr3R_560576_560847 chr3R_560576_560883 chr3R_560204_560575;chr3R_560887_561068 34.59 35.29 24.24 35.48 36.14 33.86 35.71 33.62 35.04 34.78 14.29 34.74 22.43 19.09 34.06 33.98 24.75 35.51 34.93 34.55 32.69 24.73 35.39 35.53 35.23 35.14 34.63 35.11 24.27 34.38 34.66 35.16 35.24 24.09 34.02 NA 35.94 25.00 45.33 23.91 24.37 34.40 23.58 24.62 34.38 24.14 35.48 33.88 23.67 35.71 35.11 35.00 35.11 24.47 34.71 35.71 34.76 10.22 K alternative_acceptor RI_chr3L_201061_201173,NitFhit,I_chr3L_212783_212843 chr3L + chr3L_203791_203872 chr3L_203791_203843 chr3L_203699_203790;chr3L_203873_205311 100.00 96.15 100.00 97.56 100.00 100.00 96.67 97.50 97.56 100.00 95.24 97.92 100.00 100.00 97.22 96.55 100.00 100.00 100.00 98.41 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 96.30 100.00 98.00 95.35 100.00 100.00 95.45 100.00 100.00 97.30 96.15 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 92.86 K jcn_only_AD RpL27A,E_chr2L_4457411_4457977,I_chr2L_4458058_4458120 chr2L - chr2L_4458058_4458274;chr2L_4458058_4458140;chr2L_4458058_4458162 chr2L_4458058_4458288 chr2L_4457978_4458057;chr2L_4458289_4458357 79.55 76.84 96.01 97.70 95.42 94.79 89.06 98.22 92.13 74.24 94.67 90.11 93.88 80.37 97.01 92.97 96.56 89.91 97.33 94.20 94.67 81.27 53.23 62.65 64.93 94.22 53.93 64.00 44.98 56.58 70.12 85.27 79.55 96.77 56.52 49.23 58.90 53.65 55.02 55.66 62.94 96.44 96.06 58.41 88.74 64.29 61.37 68.62 91.44 65.53 48.85 74.71 72.28 34.88 96.65 53.29 78.34 80.46 K intron_retention CG3714,I_chr2L_4190825_4191774,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,I_chr2L_4196780_4197306,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4196815_4197146 chr2L_4196814_4196815;chr2L_4197146_4197147 chr2L_4196715_4196814;chr2L_4197147_4197191 43.42 NA NA NA NA NA 41.38 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG9008 chr2L - chr2L_13775048_13775254 chr2L_13775186_13775254 chr2L_13775255_13775406;chr2L_13774837_13775047 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 9.09 NA 3.57 NA 6.90 NA 5.00 NA NA NA NA NA NA NA K jcn_only_AA CycD,I_chrX_15803256_15803313 chrX - chrX_15801825_15801891 chrX_15801833_15801891 chrX_15801892_15801960;chrX_15801764_15801824 100.00 100.00 100.00 98.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.80 100.00 100.00 100.00 96.97 98.89 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 97.67 100.00 99.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.02 100.00 100.00 100.00 100.00 100.00 98.85 100.00 99.47 K intron_retention Past1,I_chr3R_8529216_8529360 chr3R + chr3R_8529535_8529597 chr3R_8529534_8529535;chr3R_8529597_8529598 chr3R_8529361_8529534;chr3R_8529598_8529855 0.00 0.00 0.00 0.32 0.00 0.00 0.18 0.31 0.47 0.00 0.00 0.00 0.31 0.27 0.00 0.00 0.00 0.00 0.53 0.10 0.00 0.58 0.32 0.18 0.00 0.00 1.46 0.91 0.41 0.00 0.25 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.11 0.20 0.44 0.00 0.00 0.16 0.00 0.38 0.33 0.37 0.24 0.19 0.00 0.00 0.26 0.00 0.00 0.17 0.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814894;chr2R_2815654_2816013;chr2R_2816342_2816577;chr2R_2816779_2817327;chr2R_2817604_2817753 chr2R_2814895_2815653;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817328_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Df31,RE_chr2L_21628206_21629662,I_chr2L_21628206_21629666,I_chr2L_21628210_21628515,I_chr2L_21628210_21628944,I_chr2L_21628210_21629216,EI_chr2L_21628210_21629715,REI_chr2L_21628210_21629884,I_chr2L_21628224_21629666,I_chr2L_21628734_21629666 chr2L - chr2L_21628210_21629666;chr2L_21628210_21628515;chr2L_21628210_21628944;chr2L_21628210_21629715;chr2L_21628210_21629884 chr2L_21628210_21629216 chr2L_21628124_21628209;chr2L_21629885_21629918 0.10 0.00 0.14 0.18 0.00 0.09 0.11 0.10 0.05 0.00 0.00 0.26 0.20 0.00 0.06 0.10 0.15 0.16 0.13 0.26 0.16 0.47 0.05 0.19 0.00 0.16 0.09 0.00 0.00 0.00 0.15 0.16 0.27 0.08 0.00 0.00 0.12 0.22 0.18 0.40 0.24 0.16 0.25 0.07 0.26 0.05 0.06 0.12 0.07 0.14 0.07 0.07 0.00 0.20 0.06 0.42 0.08 0.04 K jcn_only_AA CG12004 chr3L + chr3L_1573765_1574987 chr3L_1573765_1573993 chr3L_1573680_1573764;chr3L_1574988_1576330 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.32 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.69 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_acceptor CG40467 chr3LHet - chr3LHet_722704_789080;chr3LHet_787974_789080 chr3LHet_787757_789080 chr3LHet_789081_789255;chr3LHet_722418_722703 100.00 NA NA 100.00 NA 0.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA Lasp,I_chr3L_16671761_16673911,R_chr3L_16672970_16673911,RI_chr3L_16674471_16704042 chr3L - chr3L_16672970_16673911;chr3L_16672574_16673911 chr3L_16673033_16673911 chr3L_16673912_16674011;chr3L_16671908_16672573 95.46 95.44 95.68 87.82 98.12 95.45 92.58 95.90 95.73 97.03 91.00 91.88 100.00 96.57 96.52 95.08 98.21 92.57 98.62 95.46 91.35 87.94 95.02 97.06 96.02 95.20 96.12 96.03 90.69 94.96 96.43 97.07 95.76 95.24 95.29 99.01 94.91 94.59 96.93 94.91 94.78 95.99 97.13 96.14 87.42 97.58 93.66 96.05 96.22 95.33 95.42 94.90 97.53 94.44 95.21 97.04 92.42 97.34 K alternative_acceptor I_chr2R_13433672_13433749,MESR4 chr2R + chr2R_13438897_13438954 chr2R_13438897_13438948 chr2R_13438630_13438896;chr2R_13438955_13443644 91.67 100.00 81.82 93.75 100.00 87.50 78.57 100.00 88.24 NA NA 94.74 90.91 NA 90.00 77.78 91.67 91.67 92.31 100.00 88.89 100.00 76.92 87.50 100.00 87.50 91.67 NA NA 100.00 NA NA 100.00 94.74 NA 87.50 90.91 NA 88.89 100.00 NA 94.44 88.89 100.00 NA 100.00 NA 90.00 94.12 87.50 91.67 NA NA NA 90.91 NA NA 100.00 K intron_retention CG1161 chr3R + chr3R_1180976_1181048 chr3R_1180975_1180976;chr3R_1181048_1181049 chr3R_1180826_1180975;chr3R_1181049_1181272 0.00 0.00 1.13 0.00 1.00 0.00 1.43 1.66 0.00 0.00 0.00 0.56 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 1.47 1.17 0.00 0.00 5.26 6.45 1.45 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 1.48 1.14 0.77 1.51 0.65 1.45 0.00 0.00 0.95 0.00 0.57 0.29 1.48 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.52 K intron_retention Dcp2,F_chr3L_15815909_15816023,F_chr3L_15817090_15817547 chr3L - chr3L_15817090_15819385 chr3L_15817089_15817090;chr3L_15819385_15819386 chr3L_15816990_15817089;chr3L_15819386_15819487 76.16 88.89 86.96 51.52 50.00 71.43 75.86 75.68 83.33 NA 54.55 64.15 68.18 69.57 88.89 80.85 85.71 76.92 94.74 63.83 64.29 44.00 76.47 NA NA 59.09 83.33 NA 92.31 70.00 70.97 NA 71.43 84.21 91.67 73.68 70.00 NA NA 83.33 NA 68.97 63.16 92.31 NA 100.00 NA 80.00 81.08 NA 76.92 NA NA NA 80.95 NA NA NA K intron_retention Taf12,RI_chr3R_7504595_7505288,I_chr3R_7504949_7505288 chr3R - chr3R_7504907_7505288 chr3R_7504906_7504907;chr3R_7505288_7505289 chr3R_7504849_7504906;chr3R_7505289_7505388 72.22 60.87 63.16 66.13 55.17 59.09 88.89 80.00 72.29 61.54 79.41 88.52 85.71 83.33 60.00 67.92 83.33 71.43 77.14 75.31 69.70 89.47 66.67 72.55 72.22 74.29 73.02 85.00 82.14 72.92 70.00 71.15 75.86 66.10 71.79 81.25 55.71 75.00 70.31 61.18 90.48 74.68 78.95 66.10 82.26 68.82 68.09 67.86 72.22 86.15 62.12 57.45 61.11 81.63 75.61 60.56 68.75 55.77 K alternative_acceptor 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5987603_5991760,I_chr2R_5988662_5991760,I_chr2R_5988666_5991760,I_chr2R_5988919_5991760,I_chr2R_5988931_5991760,I_chr2R_5990647_5991760,I_chr2R_5991249_5991760,I_chr2R_5991689_5991760,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5987356_5991764 chr2R_5987356_5991760 chr2R_5987330_5987355;chr2R_5991765_5991860 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.48 100.00 100.00 100.00 99.57 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 98.81 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.26 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG6236 chr3R - chr3R_11153785_11153849;chr3R_11153785_11153876 chr3R_11153785_11153869 chr3R_11153649_11153784;chr3R_11153877_11153988 3.48 2.38 5.26 2.13 0.00 4.76 5.26 1.67 5.81 2.86 0.00 1.54 8.33 6.25 0.00 2.08 NA 0.00 0.00 5.00 0.00 3.45 3.33 2.04 4.00 10.00 4.48 5.41 4.44 2.99 5.00 3.17 4.88 3.51 5.13 2.78 5.66 6.25 1.85 1.79 3.77 1.43 7.69 2.33 4.00 2.82 2.44 3.57 3.12 4.26 4.92 3.57 5.00 3.45 0.00 4.08 0.00 7.61 K intron_retention CG9669,RI_chr3L_16837963_16838041,RI_chr3L_16837988_16838041 chr3L - chr3L_16837963_16838041 chr3L_16837962_16837963;chr3L_16838041_16838042 chr3L_16837888_16837962;chr3L_16838042_16838062 16.03 NA NA NA NA NA NA NA 11.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA 16.67 NA NA NA 36.36 NA 20.00 25.00 NA NA NA NA NA NA NA 0.00 15.38 K jcn_only_AD CG31038,I_chr3R_25702915_25703648,I_chr3R_25705533_25722419,I_chr3R_25727788_25727905 chr3R + chr3R_25702915_25703648;chr3R_25702989_25703648;chr3R_25702897_25703648;chr3R_25702901_25703648;chr3R_25702838_25703648;chr3R_25702970_25703648 chr3R_25702895_25703648 chr3R_25703649_25703748;chr3R_25702831_25702837 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention CG30118,I_chr2R_14320281_14325712,I_chr2R_14325118_14325712 chr2R - chr2R_14318391_14318677 chr2R_14318390_14318391;chr2R_14318677_14318678 chr2R_14317820_14318390;chr2R_14318678_14318862 17.82 14.29 21.43 44.12 11.54 27.27 35.48 11.11 18.18 NA 21.43 12.50 0.00 13.04 12.50 16.00 22.22 15.15 16.22 17.65 11.11 46.51 18.87 15.09 22.58 28.57 12.50 15.56 33.33 12.50 17.78 23.53 22.58 22.22 17.86 47.37 8.70 7.89 24.39 20.00 38.89 20.37 24.14 10.00 29.17 15.56 15.79 34.62 13.11 15.62 13.95 12.00 19.51 21.05 23.33 14.00 12.90 26.67 K intron_retention CG32529 chrX + chrX_19798252_19798318 chrX_19798251_19798252;chrX_19798318_19798319 chrX_19795901_19798251;chrX_19798319_19798478 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.22 0.41 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.38 0.37 0.32 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.17 0.00 0.21 0.00 0.00 0.00 0.22 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention lsn,Cby,CG31431 chr3R + chr3R_17691470_17691536 chr3R_17691469_17691470;chr3R_17691536_17691537 chr3R_17690992_17691469;chr3R_17691537_17691683 0.00 0.00 0.00 4.88 0.00 0.00 2.00 0.00 3.70 0.00 7.41 0.00 0.00 0.00 0.00 4.00 0.00 3.45 0.00 2.67 0.00 9.09 2.17 0.00 4.76 0.00 4.08 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 1.32 1.56 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette qtc chr2L + chr2L_5068395_5070096 chr2L_5068395_5069126;chr2L_5069220_5070096 chr2L_5069127_5069219 chr2L_5068296_5068394;chr2L_5070097_5070299 14.29 NA 13.33 NA NA NA NA NA 14.29 NA NA 11.11 NA 18.18 NA 6.67 NA NA NA 21.43 NA NA NA NA NA NA NA NA NA NA NA NA 6.67 15.38 NA NA NA NA NA 12.50 NA 14.29 NA NA NA NA 6.67 11.76 14.29 NA 0.00 NA NA NA 25.00 NA 15.79 15.38 K intron_retention CG1516,cbx,I_chr2R_5752557_5752628,RI_chr2R_5752988_5757801 chr2R - chr2R_5752733_5752794 chr2R_5752732_5752733;chr2R_5752794_5752795 chr2R_5752629_5752732;chr2R_5752795_5752859 6.67 NA NA 8.33 NA 15.38 4.76 16.00 9.52 NA NA 6.67 NA 0.00 NA 0.00 NA NA 22.22 5.88 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 4.17 NA NA NA NA NA NA NA 5.71 NA NA NA 11.76 NA NA 13.79 NA 6.67 NA NA NA 0.00 NA NA 13.33 K alternative_donor CG2017 chr3R - chr3R_1686127_1687468;chr3R_1686127_1688092;chr3R_1686127_1687510 chr3R_1686127_1687891 chr3R_1685454_1686126;chr3R_1688093_1688097 60.98 58.97 60.87 50.00 62.16 47.06 61.96 52.54 61.80 68.42 48.78 60.49 59.46 61.54 54.76 51.02 56.25 53.49 54.17 62.11 50.00 61.18 65.00 65.62 64.00 60.78 62.03 72.50 55.70 66.13 59.55 68.42 60.66 57.14 54.76 64.15 74.39 62.90 65.67 63.75 62.50 60.98 53.12 60.00 61.70 57.63 63.04 50.00 54.29 53.45 59.38 71.70 63.16 65.22 63.27 72.73 77.14 60.71 K cassette CG32809,I_chrX_1576304_1577129,I_chrX_1576463_1577129,I_chrX_1576815_1577129,I_chrX_1577031_1577129,CEI_chrX_1579569_1579679,RI_chrX_1585391_1586471,I_chrX_1589508_1589564 chrX - chrX_1576815_1577129 chrX_1576815_1576895;chrX_1577031_1577129 chrX_1576896_1577030 chrX_1576803_1576814;chrX_1577130_1577229 87.50 NA NA NA NA NA 100.00 87.50 92.31 83.33 100.00 92.31 NA 100.00 NA NA 83.33 NA NA 90.91 NA 85.71 NA 100.00 NA 85.71 NA NA NA 80.00 87.50 NA NA 85.71 80.00 NA NA NA NA 80.00 NA 100.00 NA 85.71 NA NA NA 85.71 90.91 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention RhoGAP15B chrX + chrX_16847302_16847360 chrX_16847301_16847302;chrX_16847360_16847361 chrX_16845018_16847301;chrX_16847361_16847487 0.00 0.00 0.00 2.94 2.70 0.00 0.00 0.00 0.93 2.86 0.00 1.22 0.00 6.67 1.92 4.35 0.00 6.52 3.45 0.00 0.00 2.30 0.00 0.00 0.00 5.88 4.23 6.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.06 0.00 0.00 1.35 0.00 2.33 0.00 2.56 0.00 2.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 5.08 0.00 0.00 0.00 K intron_retention Snx6,RI_chr2L_8218680_8218853,I_chr2L_8230332_8238998 chr2L - chr2L_8218680_8218853 chr2L_8218679_8218680;chr2L_8218853_8218854 chr2L_8218580_8218679;chr2L_8218854_8218871 98.18 97.37 100.00 95.65 92.86 97.14 100.00 97.73 98.25 100.00 100.00 98.57 96.97 100.00 97.56 100.00 95.83 98.33 100.00 97.58 97.56 95.00 100.00 97.14 95.45 96.67 96.15 100.00 97.14 96.43 100.00 98.51 100.00 100.00 97.14 100.00 100.00 100.00 100.00 98.48 98.18 96.25 96.43 100.00 97.14 99.02 97.56 100.00 98.78 94.44 96.88 100.00 97.44 100.00 96.61 98.08 97.96 98.97 K intron_retention PRL-1,I_chr2L_16247385_16247503,I_chr2L_16250028_16250080 chr2L - chr2L_16247187_16247252 chr2L_16247186_16247187;chr2L_16247252_16247253 chr2L_16246288_16247186;chr2L_16247253_16247384 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 K jcn_only_AD scrib,I_chr3R_22362324_22363015,I_chr3R_22381374_22399575,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22362244_22363092;chr3R_22362120_22363092;chr3R_22362254_22363092;chr3R_22362224_22363092;chr3R_22362324_22363092;chr3R_22362142_22363092 chr3R_22362315_22363092 chr3R_22363093_22363115;chr3R_22362112_22362119 2.27 0.00 1.90 1.79 2.50 1.52 5.83 1.23 1.78 0.00 4.88 0.64 5.33 3.37 3.06 0.92 2.27 2.22 3.03 2.65 2.33 0.42 4.03 2.02 1.56 1.25 3.85 2.70 4.32 1.42 2.08 1.35 1.36 3.47 3.82 3.40 4.76 1.49 1.12 2.52 3.03 3.41 3.66 2.94 1.49 1.85 3.85 0.80 3.80 2.08 2.46 1.43 9.30 0.00 0.83 4.08 4.44 1.29 K intron_retention CG18854,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9788371_9788782 chr2L_9788370_9788371;chr2L_9788782_9788783 chr2L_9787352_9788370;chr2L_9788783_9789170 1.44 1.72 1.43 3.28 0.00 0.00 1.20 1.85 1.32 1.89 0.62 1.21 2.38 1.55 0.92 2.57 1.81 0.53 0.75 1.31 0.00 1.03 0.89 1.91 1.32 0.00 0.85 1.26 2.61 1.27 0.29 2.33 1.77 1.47 3.38 1.03 1.48 1.38 0.00 1.81 2.14 1.67 1.00 0.38 1.43 2.94 2.05 3.11 0.96 2.42 2.97 2.09 1.44 1.81 1.10 2.65 2.03 4.97 K intron_retention CG31975,I_chr2L_139688_140767,F_chr2L_139955_140149,CG31974 chr2L - chr2L_139688_139740 chr2L_139687_139688;chr2L_139740_139741 chr2L_139619_139687;chr2L_139741_139809 1.11 NA NA NA NA NA NA NA 5.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 14.29 0.00 NA NA 15.38 NA NA NA NA NA NA NA NA NA 3.70 0.00 20.00 0.00 0.00 NA NA 0.00 9.52 4.35 0.00 0.00 NA NA NA 0.00 0.00 NA NA 7.14 3.85 2.22 N alternative_donor kat80,I_chrX_16162233_16162306,I_chrX_16168725_16169287 chrX - chrX_16168725_16169347;chrX_16168725_16169565 chrX_16168725_16169287 chrX_16168625_16168724;chrX_16169566_16169786 3.81 0.00 3.23 6.00 0.00 3.33 3.77 4.88 5.88 5.56 0.00 5.77 9.68 3.57 6.90 2.13 3.85 0.00 5.71 5.08 0.00 0.00 3.57 2.70 4.00 0.00 2.50 4.35 0.00 3.45 12.31 NA NA 5.17 0.00 0.00 3.45 5.56 5.00 5.26 NA 5.77 5.88 6.45 NA 0.00 4.55 7.69 9.09 6.25 3.12 0.00 0.00 7.14 0.00 4.76 0.00 NA K jcn_only_AD CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2435133_2439498;chr3L_2436229_2439498 chr3L_2439416_2439498 chr3L_2439499_2439583;chr3L_2434626_2435132 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 2.13 1.61 1.79 0.00 0.00 1.52 0.00 1.43 1.33 1.26 0.00 0.00 0.50 0.00 0.77 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.46 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.96 0.00 0.00 1.22 1.22 0.00 0.00 0.96 0.00 0.00 0.00 K jcn_only_AA eIF4G,RI_chr4_945640_945708,I_chr4_945765_946199,I_chr4_948813_950447 chr4 - chr4_941826_945708 chr4_945640_945708 chr4_945709_945763;chr4_939529_941825 2.60 2.88 1.18 2.72 0.00 1.40 1.32 2.61 1.77 3.28 0.62 3.16 4.32 1.42 1.88 1.43 0.50 1.45 0.00 3.45 1.64 3.48 3.72 0.71 0.95 1.32 3.80 5.65 0.00 3.33 1.31 2.94 3.33 1.85 3.23 0.00 1.72 1.19 2.60 3.65 3.39 1.45 1.09 3.83 11.11 6.25 0.00 4.95 1.83 7.23 2.60 6.38 1.23 9.68 3.06 3.85 6.67 5.56 K alternative_acceptor CG1910,I_chr3R_27573809_27574675,I_chr3R_27574408_27574675,I_chr3R_27574557_27574675 chr3R + chr3R_27573809_27574928 chr3R_27573809_27574675 chr3R_27573709_27573808;chr3R_27574929_27575243 0.00 0.00 0.00 0.96 0.00 1.41 0.00 0.00 0.58 0.00 0.00 0.62 1.52 1.59 0.00 1.49 0.00 0.00 1.45 0.92 0.00 1.28 0.67 0.00 0.00 0.00 0.00 0.91 0.00 0.40 0.00 0.00 0.17 0.00 0.66 0.56 0.78 0.00 0.78 0.59 0.00 0.52 0.00 0.00 0.36 0.44 0.00 0.14 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 K intron_retention CG34449,RI_chrX_9232665_9233022,RI_chrX_9249209_9250033,RI_chrX_9249212_9250033,RI_chrX_9249212_9250244 chrX - chrX_9232467_9232545 chrX_9232466_9232467;chrX_9232545_9232546 chrX_9232324_9232466;chrX_9232546_9232664 18.18 24.00 14.29 26.67 25.00 15.38 19.05 18.18 12.12 NA 9.09 18.52 35.71 13.33 6.67 NA 14.29 12.50 10.53 22.22 13.33 25.00 19.35 23.08 22.22 33.33 9.68 40.00 39.13 23.08 5.88 NA 5.71 0.00 17.65 44.44 5.00 29.41 19.35 15.62 NA 13.89 14.29 15.38 25.00 20.00 14.29 35.71 14.29 23.53 26.09 22.22 18.75 NA 15.79 13.33 10.00 NA K intron_retention Pmi,PGRP-LD chr3L + chr3L_5775409_5775770 chr3L_5775408_5775409;chr3L_5775770_5775771 chr3L_5775097_5775408;chr3L_5775771_5775948 64.00 73.68 56.52 52.94 58.06 59.26 67.50 60.00 68.75 78.12 71.43 74.19 64.29 69.57 63.89 75.00 56.00 58.33 62.07 64.44 62.50 61.11 52.17 65.00 73.33 71.43 57.14 63.64 82.35 75.00 48.57 80.00 38.89 55.56 55.56 63.64 68.42 63.64 86.21 77.27 46.15 56.14 54.17 63.16 77.78 77.27 67.74 54.55 52.27 58.33 64.00 71.43 65.38 73.91 62.50 76.47 77.42 66.67 K jcn_only_AD CG9705,I_chr3L_16773492_16773604,I_chr3L_16773517_16773604,I_chr3L_16774043_16774562 chr3L + chr3L_16773521_16773604;chr3L_16773492_16773604 chr3L_16773517_16773604 chr3L_16773605_16773704;chr3L_16773417_16773491 0.00 0.89 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 1.77 0.00 0.98 0.00 0.00 1.25 0.00 1.15 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.79 0.62 0.00 0.00 1.11 0.00 0.00 0.00 1.26 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.47 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 K intron_retention CkIIbeta,I_chrX_11686847_11687475,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11687313_11687475 chrX_11687312_11687313;chrX_11687475_11687476 chrX_11687025_11687312;chrX_11687476_11687551 8.93 10.71 6.90 14.63 0.00 0.00 5.71 15.22 8.93 NA 10.53 10.64 5.26 18.18 12.90 7.27 16.67 10.53 3.45 15.15 0.00 3.57 9.09 3.85 NA 0.00 5.88 NA 10.53 0.00 7.69 14.29 7.41 9.30 18.18 10.00 0.00 0.00 13.64 21.05 5.71 9.62 7.69 9.52 0.00 8.11 5.26 12.50 8.93 5.26 14.81 0.00 10.00 11.76 10.26 10.00 5.88 4.08 K cassette Mbs,I_chr3L_16045251_16046108,I_chr3L_16057100_16057329 chr3L + chr3L_16057418_16059122 chr3L_16057418_16058147;chr3L_16058535_16059122 chr3L_16058148_16058534 chr3L_16057330_16057417;chr3L_16059123_16059129 85.25 86.15 83.82 86.58 85.11 71.43 79.38 80.70 87.43 87.18 81.94 90.97 81.71 85.94 88.06 88.89 83.02 85.71 84.71 85.00 76.56 90.12 77.50 79.52 90.00 75.00 80.00 93.62 87.27 89.13 85.71 94.44 91.81 82.81 84.00 89.92 83.80 90.67 84.04 84.44 92.59 81.56 78.85 85.47 83.54 87.10 90.16 90.29 83.58 90.77 81.52 85.25 81.97 81.40 88.46 86.54 80.95 89.71 K jcn_only_AA CG7408 chr3L + chr3L_17872349_17872977;chr3L_17872349_17873076 chr3L_17872349_17873049 chr3L_17872262_17872348;chr3L_17873077_17873164 24.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 24.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD RpL35,I_chrX_5566913_5567030,I_chrX_5567168_5567220 chrX + chrX_5566556_5567030;chrX_5566909_5567030 chrX_5566913_5567030 chrX_5567031_5567130;chrX_5566554_5566555 0.00 0.00 0.00 0.02 0.00 0.00 0.06 0.05 0.02 0.00 0.00 0.00 0.00 0.04 0.06 0.02 0.06 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.03 0.00 0.05 0.00 0.00 0.04 0.00 0.00 0.00 0.04 0.07 0.00 0.00 0.05 0.02 0.05 0.02 0.00 0.06 0.00 0.03 0.03 0.00 0.05 0.04 0.06 0.08 0.04 0.00 0.00 0.03 0.00 0.01 K alternative_acceptor bol,RI_chr3L_9117011_9118271 chr3L - chr3L_9116901_9118271;chr3L_9116877_9118271 chr3L_9117011_9118271 chr3L_9118272_9118272;chr3L_9116716_9116876 75.00 NA NA NA NA NA NA NA 71.43 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA 62.50 NA NA NA NA NA NA NA NA NA K intron_retention Chc,RI_chrX_15728405_15729273,I_chrX_15728405_15729401,I_chrX_15728946_15729357 chrX - chrX_15728405_15729357 chrX_15728404_15728405;chrX_15729357_15729358 chrX_15728305_15728404;chrX_15729358_15729366 8.24 8.24 6.98 8.28 14.29 8.24 7.98 6.09 7.23 21.21 6.35 5.35 7.04 10.00 5.36 7.49 7.14 15.28 7.55 8.46 4.71 9.09 8.33 9.00 10.00 9.09 9.28 5.13 12.24 8.75 4.95 3.45 7.27 8.33 11.34 11.70 8.06 9.30 6.94 14.89 10.34 6.70 7.94 21.10 NA 9.68 8.06 7.89 5.94 18.18 6.48 13.04 8.33 8.00 7.38 5.77 10.42 9.09 K intron_retention CG8176,I_chr3R_5348614_5348964 chr3R + chr3R_5348614_5349257 chr3R_5348613_5348614;chr3R_5349257_5349258 chr3R_5348514_5348613;chr3R_5349258_5349321 7.41 9.68 9.62 7.81 19.05 0.00 11.36 8.57 10.14 16.67 6.25 10.42 19.05 0.00 7.14 6.85 16.13 7.41 5.00 12.20 3.85 0.00 7.27 5.41 37.50 0.00 9.09 13.64 0.00 7.89 3.85 0.00 0.00 4.35 6.90 13.79 14.58 19.05 11.54 19.05 0.00 7.55 3.23 16.67 0.00 5.71 7.41 4.00 4.76 13.33 13.64 4.55 3.45 9.09 4.44 11.76 5.71 4.08 K alternative_acceptor Lnk,RI_chr3R_21714780_21715376 chr3R + chr3R_21716001_21716439 chr3R_21716001_21716424 chr3R_21715377_21716000;chr3R_21716440_21717756 16.67 16.28 12.50 15.56 17.24 12.90 10.00 15.09 19.18 5.88 7.89 15.71 21.05 19.35 17.95 11.90 15.79 22.73 15.00 15.19 13.16 26.32 19.30 22.22 9.38 16.67 19.51 24.14 16.00 14.29 21.82 16.00 10.71 14.04 17.65 14.29 16.67 21.88 20.83 16.95 25.00 19.05 17.39 21.88 4.35 12.50 23.53 15.38 17.19 19.35 11.86 15.38 12.50 21.43 9.30 21.43 25.71 17.14 K jcn_only_AD CG5694,RI_chr2L_10229956_10231366 chr2L - chr2L_10229956_10231282;chr2L_10229956_10231538 chr2L_10229956_10231394 chr2L_10229856_10229955;chr2L_10231539_10231648 3.45 NA NA 0.00 NA NA 9.68 4.76 6.45 NA NA 0.00 7.41 0.00 NA 1.82 NA 4.55 2.86 3.45 NA NA 7.69 4.76 NA NA NA NA NA NA 5.00 NA NA 0.00 NA NA NA NA NA 3.45 NA 3.12 NA NA NA NA NA 10.34 1.89 NA NA NA NA NA NA NA NA NA K intron_retention CG9485,I_chr2R_17217595_17218598,I_chr2R_17228865_17228924 chr2R + chr2R_17201222_17201928 chr2R_17201221_17201222;chr2R_17201928_17201929 chr2R_17200899_17201221;chr2R_17201929_17202269 3.45 3.45 2.38 8.33 0.00 0.00 9.09 2.04 5.88 NA 0.00 8.06 0.00 0.00 3.45 6.25 0.00 0.00 3.85 1.54 0.00 NA 11.11 5.26 NA 10.00 0.00 NA 5.56 13.33 7.41 NA 7.41 4.17 7.69 4.76 6.67 0.00 12.00 6.67 NA 4.17 3.85 0.00 0.00 0.00 NA 2.86 7.27 NA 2.86 0.00 NA NA 0.00 0.00 NA 0.00 K intron_retention CG11790,CG11791 chr3R + chr3R_20876091_20876354 chr3R_20876090_20876091;chr3R_20876354_20876355 chr3R_20876022_20876090;chr3R_20876355_20876441 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 K intron_retention CG14222,e(y)3 chrX - chrX_19516878_19516945 chrX_19516877_19516878;chrX_19516945_19516946 chrX_19516762_19516877;chrX_19516946_19517077 4.00 7.14 2.86 8.20 0.00 2.94 15.91 6.12 4.76 6.67 4.76 7.69 0.00 3.23 3.45 2.27 0.00 0.00 0.00 4.23 0.00 0.00 10.67 4.11 31.03 20.00 12.35 3.77 11.76 0.00 5.63 7.55 2.70 2.27 5.56 17.07 3.51 6.90 4.00 5.15 8.33 7.81 0.00 4.00 6.67 5.10 3.28 3.19 7.46 2.99 6.02 0.00 2.99 1.92 0.00 6.38 2.67 2.05 K alternative_donor Df31,RE_chr2L_21628206_21629662,I_chr2L_21628206_21629666,I_chr2L_21628210_21628515,I_chr2L_21628210_21628944,I_chr2L_21628210_21629216,EI_chr2L_21628210_21629715,REI_chr2L_21628210_21629884,I_chr2L_21628224_21629666,I_chr2L_21628734_21629666 chr2L - chr2L_21628210_21629216;chr2L_21628210_21628515;chr2L_21628210_21628944;chr2L_21628210_21629715;chr2L_21628210_21629884 chr2L_21628210_21629666 chr2L_21628124_21628209;chr2L_21629885_21629918 98.62 98.81 98.81 98.64 97.89 98.55 99.01 98.37 98.85 98.99 99.06 98.05 98.06 98.65 98.48 98.99 98.90 98.67 98.83 98.44 98.62 96.11 98.85 98.90 99.29 98.84 97.71 97.45 95.07 97.89 98.85 97.56 96.37 98.34 98.58 98.78 98.53 99.08 97.93 96.23 97.20 98.33 98.47 98.49 97.69 98.40 98.75 97.02 98.82 98.80 98.75 99.09 99.21 98.68 98.40 98.83 99.36 98.38 K intron_retention CG3511,I_chr2R_20461194_20461274,I_chr2R_20463661_20463716 chr2R + chr2R_20461460_20461518 chr2R_20461459_20461460;chr2R_20461518_20461519 chr2R_20461339_20461459;chr2R_20461519_20461738 0.00 0.00 0.00 7.14 0.00 9.52 2.38 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 NA 0.00 0.00 16.67 0.00 0.00 11.11 3.70 0.00 4.26 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 3.08 K alternative_acceptor I_chr2R_7778750_7781059,I_chr2R_7778971_7781059,Ef1alpha48D,I_chr2R_7779690_7780997,I_chr2R_7779690_7781065,I_chr2R_7779690_7783075,I_chr2R_7779719_7781059,I_chr2R_7779813_7781059,I_chr2R_7779892_7781059,EF_chr2R_7779896_7781065,I_chr2R_7780542_7781059,I_chr2R_7780580_7781059,snoRNA:Me28S-A1322,I_chr2R_7780840_7781059,I_chr2R_7780877_7781059,RI_chr2R_7781135_7783075 chr2R + chr2R_7779892_7781065 chr2R_7779892_7781059 chr2R_7779804_7779891;chr2R_7781066_7781097 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.49 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG9140,I_chr2L_6062436_6062583 chr2L - chr2L_6062436_6062641 chr2L_6062435_6062436;chr2L_6062641_6062642 chr2L_6062336_6062435;chr2L_6062642_6062683 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette chrw,RI_chr2R_19408490_19409650,RI_chr2R_19408490_19410750 chr2R - chr2R_19408490_19410750 chr2R_19408490_19409581;chr2R_19409716_19410750 chr2R_19409582_19409715 chr2R_19408390_19408489;chr2R_19410751_19410850 100.00 100.00 100.00 96.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 97.14 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 96.67 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 K alternative_donor CG1970,I_chr4_590803_590943,I_chr4_590970_591026,I_chr4_590970_591030 chr4 - chr4_590970_591026;chr4_590970_591034 chr4_590970_591030 chr4_590944_590969;chr4_591035_591043 0.36 0.00 0.00 0.45 0.70 0.00 0.00 0.37 0.28 0.60 0.00 0.33 0.75 0.71 0.52 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.44 0.40 0.00 0.00 0.54 0.00 0.90 0.00 1.42 0.60 0.42 0.00 0.00 1.56 0.31 0.43 0.42 0.55 0.00 0.36 0.00 0.35 0.40 0.36 0.55 1.22 0.00 0.65 0.43 0.68 0.00 0.88 0.45 0.00 0.00 0.30 K intron_retention unc-13,I_chr4_897821_902468,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_897821_899476 chr4_897820_897821;chr4_899476_899477 chr4_897721_897820;chr4_899477_899556 0.00 0.00 0.00 17.39 0.00 4.55 21.88 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 3.77 5.26 0.00 5.41 3.77 0.00 4.65 4.76 0.00 5.56 0.00 3.45 9.09 0.00 16.67 1.54 NA 6.25 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.77 0.00 0.00 NA 0.00 NA 3.12 0.00 0.00 8.82 5.26 NA NA 4.17 0.00 NA 0.00 K intron_retention CG30492,C_chr2R_3522706_3523025,RI_chr2R_3536203_3536977,I_chr2R_3543397_3543455 chr2R + chr2R_3538714_3538773 chr2R_3538713_3538714;chr2R_3538773_3538774 chr2R_3538574_3538713;chr2R_3538774_3539292 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 11.11 NA NA NA NA NA NA NA 9.09 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA 7.14 NA NA NA NA NA NA NA NA 0.00 K jcn_only_AD Adar,I_chrX_1668256_1682696,I_chrX_1674594_1674717 chrX + chrX_1673292_1674094 chrX_1673403_1674094 chrX_1674095_1674277;chrX_1673123_1673291 94.74 92.50 97.44 84.21 96.30 85.71 97.96 100.00 93.42 NA 93.75 98.11 100.00 90.32 97.22 100.00 94.74 92.59 96.49 95.24 100.00 88.00 90.70 100.00 92.31 97.14 92.86 NA NA 95.00 94.00 NA NA 95.08 91.30 NA 89.47 NA 89.66 73.53 NA 92.68 87.88 100.00 NA 95.00 100.00 NA 92.59 95.83 94.74 100.00 NA NA 87.50 91.67 96.30 NA K jcn_only_AD RpL17,I_chrX_6637182_6638207,RI_chrX_6637182_6637528,I_chrX_6637182_6637973,snoRNA:Psi28S-1232 chrX - chrX_6637182_6638178;chrX_6637182_6638228;chrX_6637182_6638141 chrX_6637182_6637982 chrX_6637093_6637181;chrX_6638229_6638235 3.83 7.92 3.88 12.41 4.32 0.97 4.55 5.34 4.10 1.39 4.81 3.83 4.10 3.33 6.03 4.40 2.56 5.56 2.97 5.74 5.49 1.48 3.26 5.56 4.60 3.01 2.30 1.12 0.96 3.38 3.51 4.02 0.75 2.73 4.90 5.15 3.52 7.50 1.42 1.83 2.05 4.66 8.18 2.20 3.96 2.37 2.33 2.32 4.03 1.94 3.30 5.08 1.02 3.16 7.03 8.21 3.93 0.77 K intron_retention CG13551,I_chr2R_19265696_19270137,I_chr2R_19265701_19270570 chr2R - chr2R_19265701_19270137 chr2R_19265700_19265701;chr2R_19270137_19270138 chr2R_19265601_19265700;chr2R_19270138_19270237 1.39 0.73 1.49 0.41 0.00 0.93 2.22 1.67 1.48 1.12 3.11 1.50 2.82 1.59 1.50 0.94 1.75 0.82 4.02 3.53 1.81 1.19 0.41 0.53 1.94 3.21 1.59 0.84 1.43 1.89 0.73 1.39 1.57 2.29 0.00 0.78 0.58 0.92 0.61 2.03 1.60 1.14 2.23 0.92 0.73 1.63 0.41 2.33 2.07 0.70 1.30 0.72 0.59 0.68 1.56 0.90 0.45 1.54 K intron_retention cryptocephal,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21315539_21318126 chr2L_21315538_21315539;chr2L_21318126_21318127 chr2L_21315533_21315538;chr2L_21318127_21318416 0.00 4.35 0.00 7.81 0.00 0.00 6.56 4.05 3.16 NA 0.00 3.77 0.00 0.00 0.00 2.86 0.00 0.00 3.57 5.88 0.00 0.00 3.92 0.00 3.85 0.00 2.63 2.94 0.00 0.00 3.12 0.00 NA 4.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 2.63 0.00 0.00 4.17 5.71 6.02 0.00 3.39 3.23 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3088120_3088191;chr3L_3088139_3088191;chr3L_3088124_3088191 chr3L_3088129_3088191 chr3L_3088192_3088663;chr3L_3087957_3088119 0.00 0.62 0.70 0.00 0.83 0.00 0.00 0.00 0.32 0.00 0.93 0.00 0.00 0.00 0.72 0.72 0.00 0.00 0.00 0.30 0.00 0.00 0.47 0.00 0.92 0.00 0.65 0.00 0.00 0.00 0.79 0.99 0.00 2.13 0.00 0.75 0.47 0.75 0.00 0.00 0.00 0.85 1.08 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.60 K jcn_only_AA CG7091,RI_chr3R_8805541_8805680,I_chr3R_8809774_8809832 chr3R + chr3R_8805541_8805680 chr3R_8805541_8805676 chr3R_8805441_8805540;chr3R_8805681_8805780 100.00 98.89 100.00 99.36 100.00 100.00 98.48 99.39 97.42 100.00 100.00 99.36 100.00 98.61 98.26 97.18 99.00 100.00 100.00 97.93 98.85 100.00 100.00 100.00 NA 98.68 100.00 100.00 100.00 100.00 95.39 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 98.99 100.00 97.94 100.00 100.00 100.00 100.00 100.00 97.65 96.79 100.00 98.36 100.00 97.96 100.00 99.30 100.00 100.00 97.89 K jcn_only_AA I_chr2L_4834257_4835246,CG15626,I_chr2L_4837691_4837844,I_chr2L_4837780_4837844 chr2L - chr2L_4837640_4837844;chr2L_4837691_4837844 chr2L_4837780_4837844 chr2L_4837845_4837944;chr2L_4837602_4837639 0.00 0.00 0.00 2.94 6.25 0.00 2.70 6.12 2.11 0.00 0.00 0.00 4.08 2.78 2.08 2.22 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.12 0.00 0.00 0.00 0.00 7.14 1.96 0.00 NA 0.00 6.52 3.23 5.13 NA 0.00 3.57 4.44 0.00 3.57 5.00 5.00 0.00 0.00 0.00 0.00 0.00 4.17 2.63 2.78 1.85 0.00 K jcn_only_AD I_chr3L_18664773_18665233,GNBP2,I_chr3L_18667579_18667644 chr3L - chr3L_18668078_18668318;chr3L_18668078_18668478 chr3L_18668078_18668437 chr3L_18667645_18668077;chr3L_18668479_18668494 6.82 4.55 5.56 7.04 6.90 20.00 2.30 5.19 6.73 NA 0.00 16.44 16.13 5.71 0.00 0.00 17.50 14.29 4.76 17.02 6.06 8.00 7.50 3.33 4.35 6.45 2.86 NA NA NA 12.50 8.00 18.18 7.69 NA 15.38 5.00 NA 9.68 2.50 NA 12.33 0.00 19.51 4.55 3.85 20.00 5.71 7.81 0.00 10.71 12.00 NA NA 11.11 12.90 5.00 0.00 K jcn_only_AA I_chrX_1757755_1757801,Pgam5,I_chrX_1793073_1794406,RI_chrX_1795648_1795745 chrX - chrX_1766937_1767005 chrX_1766940_1767005 chrX_1767006_1767583;chrX_1766389_1766936 85.82 84.55 89.16 79.49 88.64 88.41 83.56 86.75 88.29 93.94 85.37 79.28 89.74 77.27 82.02 81.13 86.49 84.00 88.37 86.55 85.71 88.31 84.96 84.05 86.08 87.04 91.67 80.95 80.00 88.10 85.96 90.14 86.72 80.68 83.18 78.26 89.13 85.85 88.19 81.05 84.83 85.71 82.35 80.95 80.92 85.82 85.96 73.08 86.79 82.18 77.78 91.38 85.00 91.80 91.53 90.52 86.34 80.00 K cassette CG4495,I_chr2L_7183323_7183502 chr2L + chr2L_7183323_7183777 chr2L_7183323_7183502;chr2L_7183666_7183777 chr2L_7183503_7183665 chr2L_7183223_7183322;chr2L_7183778_7183815 1.93 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 4.76 NA 8.33 4.76 14.29 NA 0.00 0.00 NA NA NA 7.69 NA NA 3.85 NA NA 0.00 7.69 NA 5.00 5.56 3.85 NA NA NA 5.56 NA 0.00 3.85 6.67 6.67 7.69 0.00 NA 0.00 NA NA 0.00 K intron_retention CG11722,RI_chr3R_5873666_5874292 chr3R - chr3R_5870940_5870992 chr3R_5870939_5870940;chr3R_5870992_5870993 chr3R_5870848_5870939;chr3R_5870993_5871192 0.00 NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA 7.14 0.00 NA NA NA NA NA NA NA NA K multi_cassette l(3)82Fd,I_chr3R_1125296_1161435,I_chr3R_1125296_1175189,I_chr3R_1129905_1148709,I_chr3R_1129905_1160126,I_chr3R_1131576_1133656,I_chr3R_1131693_1133665,EI_chr3R_1136699_1138710,I_chr3R_1140028_1160126,I_chr3R_1147660_1148709 chr3R - chr3R_1129905_1148709 chr3R_1129905_1138710;chr3R_1139220_1139659;chr3R_1140028_1148709 chr3R_1138711_1139219;chr3R_1139660_1140027 chr3R_1129833_1129904;chr3R_1148710_1148745 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5987603_5991760,I_chr2R_5988662_5991760,I_chr2R_5988666_5991760,I_chr2R_5988919_5991760,I_chr2R_5988931_5991760,I_chr2R_5990647_5991760,I_chr2R_5991249_5991760,I_chr2R_5991689_5991760,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5987244_5991760;chr2R_5987237_5991760 chr2R_5987356_5991760 chr2R_5991761_5991860;chr2R_5987235_5987236 62.60 65.74 61.92 58.94 36.16 64.92 65.36 59.08 45.85 79.17 54.12 65.63 52.60 60.20 60.56 58.01 45.40 43.97 62.60 51.28 57.53 60.50 70.78 61.54 68.04 70.24 74.73 76.32 63.55 72.65 61.36 61.79 63.64 62.63 90.79 91.43 34.38 59.56 65.38 68.56 70.83 57.73 58.06 71.32 57.07 79.08 66.36 67.03 62.21 61.79 82.76 54.98 79.07 87.88 61.41 67.23 56.48 69.72 K cassette sd,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15706472_15713628 chrX_15706472_15708058;chrX_15708329_15713628 chrX_15708059_15708328 chrX_15706468_15706471;chrX_15713629_15713756 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.55 100.00 97.92 100.00 99.14 100.00 98.57 98.70 100.00 100.00 100.00 100.00 97.83 100.00 98.59 100.00 100.00 98.59 100.00 100.00 98.57 100.00 100.00 98.53 98.84 100.00 100.00 97.22 100.00 96.55 98.04 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CtBP chr3R + chr3R_8850752_8851110 chr3R_8850767_8851110 chr3R_8851111_8851987;chr3R_8850711_8850751 80.00 84.62 NA NA 63.64 NA 63.64 85.71 68.75 NA 87.50 73.08 NA NA 80.00 100.00 NA NA NA 83.33 NA 80.00 90.91 78.57 80.00 55.56 NA 80.00 50.00 81.25 NA 66.67 54.55 87.50 NA 77.78 93.75 77.78 83.33 88.24 NA 83.33 NA 73.33 90.91 85.71 76.92 NA 76.92 69.57 90.91 NA 80.00 69.23 NA 88.89 84.62 NA K cassette Mlf,noncoding_7111,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824086_11825951;chr2R_11825385_11825951;chr2R_11824089_11825951 chr2R_11825385_11825619,chr2R_11824086_11825619,chr2R_11824089_11825619;chr2R_11825773_11825951 chr2R_11825620_11825772 chr2R_11823989_11824085;chr2R_11825952_11826483 1.68 1.27 0.96 12.03 1.51 1.03 3.83 3.02 1.55 3.70 5.59 3.51 13.67 3.05 2.48 4.00 3.09 1.05 1.61 1.51 3.11 1.05 0.90 1.04 1.60 2.76 1.85 3.27 1.16 1.41 2.13 1.41 1.99 2.33 1.35 0.33 0.82 0.56 0.90 1.88 2.02 1.64 3.03 1.11 2.08 2.03 1.18 1.68 1.62 1.25 1.95 1.69 1.06 1.84 1.88 1.88 1.27 1.52 K intron_retention CG10157,I_chr3R_19504981_19505055 chr3R + chr3R_19504750_19504815 chr3R_19504749_19504750;chr3R_19504815_19504816 chr3R_19504638_19504749;chr3R_19504816_19504980 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.54 NA NA NA NA NA NA 13.79 NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 K intron_retention mor chr3R - chr3R_11795317_11795603 chr3R_11795316_11795317;chr3R_11795603_11795604 chr3R_11794297_11795316;chr3R_11795604_11795814 2.10 0.00 0.00 1.27 0.00 0.00 5.56 4.60 3.39 2.38 6.06 2.15 5.77 4.00 0.00 2.50 2.70 0.00 0.00 2.21 4.17 4.08 3.70 1.85 0.00 0.00 5.63 8.16 1.85 2.86 0.00 1.94 1.87 4.00 0.00 1.98 0.00 1.37 3.61 2.10 3.15 2.33 0.00 2.60 2.08 2.21 2.27 2.36 4.76 0.00 0.00 1.59 0.00 0.00 0.00 1.16 2.94 2.22 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814894;chr2R_2815657_2816013;chr2R_2816342_2816577;chr2R_2816779_2817459;chr2R_2817604_2817753 chr2R_2814895_2815656;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817460_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG13890 chr3L + chr3L_851894_851952 chr3L_851893_851894;chr3L_851952_851953 chr3L_851774_851893;chr3L_851953_852693 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.32 15.38 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Nup154,I_chr2L_11009331_11009442,I_chr2L_11011380_11011453 chr2L + chr2L_11009331_11009442 chr2L_11009378_11009442 chr2L_11009443_11009542;chr2L_11009231_11009330 98.54 98.23 95.00 99.37 95.89 100.00 98.63 99.44 99.50 100.00 98.63 96.93 96.97 97.30 98.98 97.20 97.87 96.55 98.00 98.64 98.72 98.98 96.97 99.25 96.91 99.18 98.31 100.00 89.23 99.37 99.01 99.43 99.56 98.40 96.25 100.00 94.32 98.82 99.12 97.89 99.45 98.19 96.51 98.53 98.84 99.65 95.83 98.77 98.54 98.19 99.30 100.00 92.41 93.00 97.79 97.60 97.83 99.34 K intron_retention CG7852,Cct1,Cct2 chr3L + chr3L_1537243_1537523 chr3L_1537242_1537243;chr3L_1537523_1537524 chr3L_1537183_1537242;chr3L_1537524_1537989 6.06 11.11 5.26 21.43 0.00 NA 10.81 3.45 9.80 0.00 NA 11.54 10.00 8.33 0.00 17.65 0.00 0.00 0.00 9.80 0.00 4.44 8.51 2.56 0.00 15.79 16.67 3.77 12.50 6.06 6.90 NA 0.00 2.86 4.35 21.88 6.25 7.69 3.33 8.75 5.00 11.36 NA 9.62 0.00 4.17 NA 2.56 2.78 8.57 9.76 0.00 10.53 NA 10.71 0.00 8.70 0.00 K intron_retention Aldh-III,RE_chr2R_3355332_3355720,I_chr2R_3356541_3356614,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3354822_3354978 chr2R_3354821_3354822;chr2R_3354978_3354979 chr2R_3354726_3354821;chr2R_3354979_3354987 33.33 25.00 36.36 46.15 38.89 34.62 41.67 21.21 27.12 NA NA 25.49 26.67 22.73 31.03 42.31 21.43 41.18 36.36 38.33 40.00 57.89 35.14 33.33 47.06 46.15 32.43 37.50 36.84 32.00 20.69 33.33 42.11 30.56 26.09 39.47 29.17 26.92 22.03 41.38 53.85 32.65 25.00 22.58 30.77 38.89 33.33 33.33 33.33 36.36 27.78 18.52 18.52 26.83 33.33 23.91 23.91 42.11 K intron_retention CG33558,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2816342_2817753 chr2R_2816341_2816342;chr2R_2817753_2817754 chr2R_2816242_2816341;chr2R_2817754_2817762 23.53 NA NA NA 12.50 16.67 NA NA 33.33 NA NA NA NA NA 41.67 NA NA NA NA 17.65 NA NA 25.00 16.67 NA NA NA NA NA 23.53 NA NA NA NA NA NA 28.00 20.00 35.29 66.67 NA 53.33 NA NA 5.56 13.33 NA 15.00 33.33 36.36 23.08 NA NA NA NA NA NA NA N jcn_only_AD Lag1,RI_chrX_6153758_6153930,I_chrX_6153758_6155077,RI_chrX_6153758_6161036,I_chrX_6160751_6160887,I_chrX_6160907_6161036 chrX - chrX_6153758_6155077;chrX_6153758_6154631;chrX_6153758_6153930;chrX_6153758_6154193;chrX_6153758_6154358;chrX_6153758_6160439 chrX_6153758_6161036 chrX_6153658_6153757;chrX_6161037_6161136 0.32 0.26 0.00 1.14 0.62 0.32 0.00 0.20 0.23 0.37 1.65 0.15 0.34 0.36 0.00 0.92 0.66 0.49 1.39 0.11 0.24 0.66 0.13 0.00 0.30 0.32 0.44 0.82 0.35 0.00 0.25 1.43 0.29 0.53 0.92 0.00 0.13 0.43 0.15 0.76 0.47 0.81 0.68 0.00 0.33 0.00 0.21 0.36 0.33 0.64 0.15 0.00 0.00 1.19 0.00 0.90 0.00 0.00 K alternative_acceptor CG4658,I_chr2L_9958819_9958939 chr2L + chr2L_9957330_9957428 chr2L_9957330_9957402 chr2L_9957318_9957329;chr2L_9957429_9957807 41.67 50.00 37.50 46.67 NA 44.44 64.71 39.29 58.62 NA 36.36 50.00 NA 41.67 35.00 30.00 55.56 50.00 37.50 43.75 30.00 NA NA 75.00 NA 37.50 NA NA NA NA 43.75 NA NA 39.13 NA NA 80.00 NA NA 31.82 NA 37.04 40.00 NA NA NA NA NA 41.67 NA NA NA NA NA 42.11 NA NA NA K jcn_only_AD CG17490 chr2L + chr2L_22431120_22432684;chr2L_22431088_22432684;chr2L_22431301_22432684 chr2L_22431020_22432684 chr2L_22432685_22433056;chr2L_22431014_22431019 16.30 NA NA NA NA NA NA 27.59 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 K intron_retention CG10260 chrX + chrX_2519819_2519896 chrX_2519818_2519819;chrX_2519896_2519897 chrX_2519605_2519818;chrX_2519897_2520958 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.14 1.28 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 4.35 0.00 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 1.15 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG10407,ird5,CG10185 chr3R - chr3R_11870998_11871076 chr3R_11870998_11871064 chr3R_11870943_11870997;chr3R_11871077_11871396 6.25 NA NA NA NA NA 5.00 27.27 4.17 NA NA NA NA NA NA NA NA NA NA NA NA NA 7.50 4.55 NA NA 0.00 NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA 9.52 NA NA NA 4.76 NA NA 25.00 NA NA NA NA 22.73 NA NA 7.69 NA K alternative_donor E_chr4_592469_594231,Ephrin,I_chr4_595055_597604,RI_chr4_596272_596341 chr4 + chr4_592737_594238;chr4_592646_594238;chr4_592490_594238;chr4_592593_594238;chr4_592469_594238;chr4_592410_594238 chr4_592798_594238 chr4_594239_594331;chr4_592404_592409 0.00 0.00 0.00 4.55 0.00 0.00 13.64 10.53 16.67 NA 0.00 6.25 0.00 12.50 0.00 9.09 14.29 0.00 11.11 7.69 0.00 0.00 0.00 0.00 0.00 16.67 0.00 NA 0.00 0.00 0.00 NA NA 4.55 0.00 0.00 0.00 NA NA 0.00 NA 14.29 0.00 0.00 NA 0.00 NA 50.00 5.26 NA 0.00 0.00 NA NA 0.00 NA NA NA K jcn_only_AD Rcd6,I_chr2R_16518342_16520460,I_chr2R_16518620_16518916,RI_chr2R_16520388_16520855 chr2R - chr2R_16518620_16520294;chr2R_16518620_16520855 chr2R_16518620_16518916 chr2R_16518520_16518619;chr2R_16520856_16520918 12.12 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.12 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG16936,I_chr2R_20660319_20660496 chr2R - chr2R_20654941_20654997 chr2R_20654940_20654941;chr2R_20654997_20654998 chr2R_20654267_20654940;chr2R_20654998_20655100 0.78 1.06 0.00 0.00 0.00 2.73 1.72 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 1.61 0.00 29.41 3.51 0.00 0.00 0.00 3.90 15.00 8.16 0.00 4.35 0.00 1.23 1.57 1.96 0.00 1.03 4.12 1.32 0.58 0.00 1.05 0.00 0.00 1.31 1.43 1.34 1.32 2.17 2.56 0.78 3.17 1.39 1.43 1.56 0.00 0.00 0.65 K intron_retention I_chrX_16495232_16495296,mbt chrX + chrX_16506739_16507570 chrX_16506738_16506739;chrX_16507570_16507571 chrX_16506467_16506738;chrX_16507571_16508883 7.14 2.13 10.26 40.48 2.86 6.06 19.35 10.87 10.14 7.41 44.00 14.81 6.45 8.33 9.09 9.09 0.00 10.53 3.85 5.00 21.05 44.23 5.06 5.80 9.80 9.52 5.45 9.76 10.17 3.57 9.09 2.38 6.67 9.26 3.03 4.55 1.12 8.70 3.03 7.94 8.11 4.48 3.57 6.25 7.32 3.28 7.55 7.55 2.82 8.33 7.14 3.57 0.00 5.88 7.69 0.00 3.77 0.00 K intron_retention CG9172,eIF5,EI_chrX_15885411_15885854 chrX - chrX_15880717_15880770 chrX_15880716_15880717;chrX_15880770_15880771 chrX_15879877_15880716;chrX_15880771_15880778 6.25 8.11 7.50 4.84 5.26 4.17 6.90 3.23 2.38 3.85 4.44 6.90 7.89 6.25 12.20 5.88 6.25 5.88 7.32 6.19 6.25 0.00 9.09 0.00 6.67 12.12 22.22 36.36 21.88 10.53 12.50 14.29 11.54 4.62 9.52 11.76 0.00 5.00 5.88 5.00 11.76 4.00 0.00 0.00 7.27 10.81 6.90 15.38 6.25 0.00 0.00 0.00 0.00 NA 1.67 0.00 4.17 13.11 K jcn_only_AA Sin3A,RI_chr2R_8469457_8469793,I_chr2R_8473578_8480185,RI_chr2R_8479951_8480233 chr2R - chr2R_8469445_8469793 chr2R_8469457_8469793 chr2R_8469794_8469893;chr2R_8469357_8469444 27.87 26.73 25.00 28.00 20.00 24.62 16.82 32.43 25.39 39.71 29.03 25.50 20.00 15.94 24.69 33.33 32.50 27.16 23.81 25.77 29.11 35.86 28.21 25.66 34.83 36.05 18.95 16.67 28.72 30.15 24.19 27.87 31.11 30.60 31.39 47.41 26.09 24.07 28.25 31.58 37.50 20.35 34.29 21.13 26.32 32.18 16.13 41.77 27.65 21.80 20.00 26.67 30.61 35.48 29.67 29.20 25.29 28.97 K alternative_donor Atet,chr2L_4334987_4335394.0,chr2L_4335788_4336447.0 chr2L + chr2L_4334440_4336449;chr2L_4334111_4336449;chr2L_4334031_4336449 chr2L_4334105_4336449 chr2L_4336450_4336957;chr2L_4333936_4334030 25.00 26.32 27.59 14.89 30.77 16.00 10.34 17.07 17.02 33.33 20.00 20.41 14.29 20.69 34.29 25.00 11.11 27.27 18.18 11.11 11.76 50.00 34.48 27.59 39.13 21.43 38.30 36.67 26.23 19.44 26.92 26.67 34.21 19.51 30.00 29.41 21.05 41.18 37.50 14.04 34.15 24.49 19.05 17.95 20.69 32.08 16.00 27.27 24.49 39.13 25.81 31.25 27.27 38.46 14.29 20.00 21.43 23.61 K intron_retention garz,CEI_chr2R_8219604_8219651 chr2R + chr2R_8219604_8219977 chr2R_8219603_8219604;chr2R_8219977_8219978 chr2R_8219504_8219603;chr2R_8219978_8220231 0.00 0.00 2.13 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 2.56 4.88 1.82 1.12 3.03 3.57 0.00 0.00 0.00 0.00 5.56 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 1.92 0.00 1.28 0.00 K intron_retention CG14196 chrX - chrX_19132507_19135345 chrX_19132506_19132507;chrX_19135345_19135346 chrX_19132470_19132506;chrX_19135346_19135981 0.00 NA NA NA NA NA 6.67 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA 2.15 0.00 0.00 0.00 0.00 4.00 3.45 0.00 0.00 0.00 NA 4.35 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA NA 0.00 3.85 NA K multi_cassette AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9003790_9007675 chrX_9003790_9004854;chrX_9005039_9005114;chrX_9005177_9005419;chrX_9005562_9005630;chrX_9005820_9005886;chrX_9006126_9006195;chrX_9006273_9006782;chrX_9006801_9007675 chrX_9004855_9005038;chrX_9005115_9005176;chrX_9005420_9005561;chrX_9005631_9005819;chrX_9005887_9006125;chrX_9006196_9006272;chrX_9006783_9006800 chrX_9003721_9003789;chrX_9007676_9007775 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 95.24 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention sd,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15714587_15717219 chrX_15714586_15714587;chrX_15717219_15717220 chrX_15714456_15714586;chrX_15717220_15717260 0.00 0.00 0.00 8.11 0.00 0.00 5.56 0.00 7.79 0.00 0.00 4.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 1.35 3.70 0.00 0.00 0.99 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 2.27 0.00 5.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor sgg,I_chrX_2528059_2528637,I_chrX_2528131_2535622,RI_chrX_2528212_2535830,I_chrX_2528367_2535622,I_chrX_2528472_2535622,I_chrX_2529065_2563945,I_chrX_2536127_2563666,I_chrX_2563342_2563666,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2528288_2535622;chrX_2528212_2535622 chrX_2528059_2535622 chrX_2535623_2535722;chrX_2528052_2528058 63.64 66.67 64.52 59.52 75.00 60.00 56.76 69.35 70.77 NA 50.00 56.67 81.82 58.62 68.18 66.67 46.67 50.00 63.64 66.67 45.45 85.71 68.18 64.29 28.57 70.59 60.00 NA NA 90.91 63.33 42.86 NA 58.70 63.64 55.56 81.82 66.67 60.00 62.50 NA 58.14 75.00 60.00 NA 54.55 64.29 NA 67.86 NA 61.11 75.00 NA NA 68.75 45.45 72.73 NA K alternative_acceptor RI_chrX_6482284_6482336,Pat1,I_chrX_6489999_6490050,APC7 chrX + chrX_6489505_6489571 chrX_6489505_6489568 chrX_6489347_6489504;chrX_6489572_6489993 97.87 100.00 97.06 98.11 96.97 96.88 97.18 98.33 98.70 95.24 96.88 98.28 97.56 96.97 97.78 100.00 96.77 97.73 97.30 100.00 97.37 97.87 100.00 93.55 96.00 97.30 98.00 97.30 100.00 96.97 97.50 100.00 100.00 96.23 96.15 100.00 100.00 100.00 97.50 100.00 100.00 98.61 96.77 100.00 90.32 100.00 100.00 100.00 98.48 100.00 91.49 96.00 100.00 100.00 95.35 100.00 100.00 97.62 K intron_retention Tango1,I_chr2L_6652699_6652752 chr2L + chr2L_6651243_6651272 chr2L_6651242_6651243;chr2L_6651272_6651273 chr2L_6651050_6651242;chr2L_6651273_6651891 100.00 100.00 96.97 98.59 100.00 100.00 100.00 98.36 98.77 100.00 100.00 98.57 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 100.00 100.00 100.00 100.00 97.92 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 96.67 96.77 100.00 100.00 97.78 100.00 100.00 100.00 100.00 100.00 K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,RI_chr3R_27801288_27801517,I_chr3R_27801288_27801596 chr3R - chr3R_27798276_27805244 chr3R_27798276_27801169;chr3R_27801288_27801517;chr3R_27801688_27805244 chr3R_27801170_27801287;chr3R_27801518_27801687 chr3R_27798224_27798275;chr3R_27805245_27805341 90.00 100.00 100.00 90.00 NA NA NA 87.50 55.56 NA 100.00 100.00 NA 75.00 100.00 100.00 NA 80.00 100.00 83.33 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 75.00 NA 66.67 NA NA NA 100.00 NA 80.00 85.71 NA 75.00 NA NA NA 80.00 NA NA 100.00 K intron_retention larp,I_chr3R_24150390_24150531,F_chr3R_24151542_24153876,RI_chr3R_24160430_24161527 chr3R - chr3R_24151542_24151775 chr3R_24151541_24151542;chr3R_24151775_24151776 chr3R_24151442_24151541;chr3R_24151776_24151825 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 6.67 7.69 12.50 NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 NA NA NA NA NA NA 3.23 NA 0.00 0.00 NA NA NA NA NA NA K intron_retention CG6643,I_chr3R_20370792_20375406 chr3R + chr3R_20378706_20380077 chr3R_20378705_20378706;chr3R_20380077_20380078 chr3R_20378620_20378705;chr3R_20380078_20380126 1.49 5.56 2.60 4.76 0.00 0.00 6.06 1.67 1.39 0.00 4.62 2.29 0.00 0.00 0.00 2.67 0.00 0.00 4.49 1.07 5.00 1.97 0.00 1.49 0.00 0.00 0.00 0.00 0.00 1.96 1.89 0.00 0.00 4.88 1.92 0.00 2.78 1.82 0.00 3.49 1.67 1.38 1.82 2.53 0.00 0.00 1.18 2.00 3.33 4.26 4.17 4.17 0.00 0.00 2.22 0.00 1.01 3.96 K intron_retention eIF5,I_chrX_15882955_15883078,RI_chrX_15883163_15883424,I_chrX_15883297_15883424,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15883143_15883470 chrX_15883142_15883143;chrX_15883470_15883471 chrX_15883079_15883142;chrX_15883471_15883504 100.00 100.00 96.77 100.00 100.00 96.15 100.00 100.00 98.41 NA 100.00 100.00 100.00 100.00 100.00 98.80 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 95.65 100.00 100.00 94.44 97.56 98.65 100.00 96.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 96.97 100.00 98.95 100.00 100.00 94.44 95.65 100.00 100.00 94.44 100.00 97.96 K intron_retention RpS27,I_chr3R_21072390_21072647,I_chr3R_21072390_21072710,I_chr3R_21072390_21073049 chr3R - chr3R_21072390_21073154 chr3R_21072389_21072390;chr3R_21073154_21073155 chr3R_21072290_21072389;chr3R_21073155_21073223 0.14 0.00 0.25 0.07 0.00 0.12 0.19 0.12 0.09 0.13 0.18 0.19 0.30 0.08 0.08 0.31 0.06 0.00 0.10 0.24 0.21 0.64 0.00 0.00 0.58 0.18 0.26 0.94 0.93 0.62 0.12 0.55 0.60 0.13 0.00 0.43 0.00 0.00 0.00 0.33 0.62 0.10 0.14 0.00 0.21 0.80 0.33 0.46 0.34 0.10 0.00 0.29 0.09 0.00 0.17 0.00 0.14 0.14 K alternative_acceptor WRNexo chr3R - chr3R_14191333_14191393 chr3R_14191336_14191393 chr3R_14191394_14191498;chr3R_14191130_14191332 66.67 66.67 41.67 56.25 NA NA 66.67 68.18 61.11 NA NA 64.29 55.56 50.00 60.00 70.00 54.55 NA 75.00 68.42 NA NA 81.25 66.67 NA NA 60.00 NA NA NA NA NA NA 60.00 NA NA 66.67 NA 66.67 50.00 NA 66.67 70.00 NA NA NA 60.00 66.67 66.67 63.64 58.33 66.67 57.14 54.55 83.33 87.50 55.56 90.00 K alternative_acceptor Idh,I_chr3L_8351006_8351949,I_chr3L_8351036_8351655 chr3L - chr3L_8351006_8351115 chr3L_8351036_8351115 chr3L_8351116_8351172;chr3L_8350936_8351005 60.00 NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2460154_2461145 chr3L_2460153_2460154;chr3L_2461145_2461146 chr3L_2459591_2460153;chr3L_2461146_2461268 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.85 0.00 0.99 1.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Df31,RE_chr2L_21628206_21629662,I_chr2L_21628206_21629666,I_chr2L_21628210_21628515,I_chr2L_21628210_21628944,I_chr2L_21628210_21629216,EI_chr2L_21628210_21629715,REI_chr2L_21628210_21629884,I_chr2L_21628224_21629666 chr2L - chr2L_21628210_21629216;chr2L_21628210_21629666;chr2L_21628210_21628944;chr2L_21628210_21629715;chr2L_21628210_21629884 chr2L_21628210_21628515 chr2L_21628124_21628209;chr2L_21629885_21629918 0.07 0.07 0.07 0.09 0.08 0.17 0.06 0.00 0.00 0.00 0.21 0.17 0.00 0.00 0.00 0.10 0.00 0.16 0.00 0.02 0.00 0.00 0.00 0.19 0.00 0.16 0.27 0.41 0.12 0.00 0.15 0.08 0.18 0.00 0.00 0.10 0.12 0.00 0.18 0.09 0.00 0.04 0.00 0.07 0.05 0.05 0.13 0.18 0.14 0.07 0.07 0.00 0.13 0.00 0.06 0.07 0.00 0.04 N jcn_only_AA Kr-h1,chr2L_6088263_6088504.0 chr2L + chr2L_6083741_6091609;chr2L_6083741_6084867 chr2L_6083741_6092994 chr2L_6083642_6083740 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 18.33 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 100.00 100.00 96.30 100.00 100.00 100.00 NA 98.97 100.00 NA NA NA NA NA 100.00 NA NA 100.00 K jcn_only_AA Rfx,I_chr3R_6198928_6200931 chr3R - chr3R_6198232_6198462 chr3R_6198256_6198462 chr3R_6198463_6198898;chr3R_6197871_6198231 14.81 NA NA 17.50 NA NA NA NA 5.00 NA NA 4.55 NA NA NA NA NA NA NA 7.50 NA 11.11 17.39 NA NA NA NA NA 18.18 NA NA NA 17.24 NA NA 33.33 16.00 NA 14.71 14.81 NA 2.50 NA NA NA NA 14.29 14.81 11.11 NA 25.00 NA 18.18 NA 0.00 NA NA NA K intron_retention cib,I_chrX_4000307_4003527 chrX + chrX_4003858_4003929 chrX_4003857_4003858;chrX_4003929_4003930 chrX_4003722_4003857;chrX_4003930_4004043 1.43 1.89 1.03 1.81 0.00 3.85 3.25 2.16 1.43 0.00 0.00 2.58 0.00 1.39 3.75 1.45 3.77 0.00 1.28 1.97 0.00 2.37 1.85 2.12 2.38 0.00 4.73 8.13 10.00 1.61 2.33 2.08 1.29 0.56 0.68 1.12 1.45 0.00 1.72 1.02 1.62 0.00 0.00 0.00 1.73 0.47 0.96 1.05 1.18 0.00 2.99 0.00 2.86 0.00 0.00 1.33 2.88 2.44 K alternative_donor eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341925_20342041;chr3L_20341636_20342041;chr3L_20341509_20342041;chr3L_20341865_20342041;chr3L_20341486_20342041;chr3L_20341522_20342041;chr3L_20341751_20342041;chr3L_20341530_20342041;chr3L_20341598_20342041;chr3L_20341759_20342041 chr3L_20341629_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27045188;chr3R_27044771_27045257;chr3R_27044771_27045132;chr3R_27044771_27045027;chr3R_27044771_27045110;chr3R_27044771_27044831;chr3R_27044771_27044990;chr3R_27044771_27044895 chr3R_27044771_27044867 chr3R_27044671_27044770;chr3R_27045258_27045273 0.00 0.00 0.17 0.09 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.20 0.13 0.15 0.00 0.09 0.23 0.00 2.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.24 0.00 1.05 0.00 K intron_retention Det,CG5285,CG5292 chr3R + chr3R_12975900_12975960 chr3R_12975899_12975900;chr3R_12975960_12975961 chr3R_12975720_12975899;chr3R_12975961_12976208 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 5.88 16.67 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Atpalpha,I_chr3R_16783890_16785070,I_chr3R_16788018_16789830,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16783890_16784958 chr3R_16783889_16783890;chr3R_16784958_16784959 chr3R_16783790_16783889;chr3R_16784959_16785012 4.80 3.85 0.00 0.00 NA NA 11.11 1.52 4.84 NA NA 4.00 0.00 8.82 8.33 4.35 5.56 NA 6.82 1.92 NA 7.14 0.00 NA NA 0.00 0.00 NA NA NA 12.00 NA NA 8.06 0.00 0.00 14.29 NA NA 4.76 NA 0.00 6.25 9.09 NA 0.00 NA 6.25 8.89 29.41 0.00 13.33 NA NA 6.90 NA NA NA K alternative_acceptor CG8121,RI_chr3R_5183458_5183705 chr3R + chr3R_5160975_5161221 chr3R_5160975_5161218 chr3R_5160915_5160974;chr3R_5161222_5161357 43.75 30.00 NA 60.00 NA NA 50.00 63.64 47.37 NA NA 36.84 NA 50.00 36.36 31.25 NA NA 45.45 41.67 NA NA NA NA NA 60.00 NA NA 36.36 NA 36.36 NA NA 43.75 NA NA NA NA NA 36.84 NA 33.33 NA 38.89 NA 53.33 NA 31.58 50.00 NA NA NA NA NA 46.15 NA NA 53.85 K intron_retention CG12753,Pak3 chr3R - chr3R_12264373_12264433 chr3R_12264372_12264373;chr3R_12264433_12264434 chr3R_12263787_12264372;chr3R_12264434_12264895 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2390808;chrX_2390959_2391350;chrX_2391522_2393243 chrX_2387584_2387709;chrX_2388437_2388670;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2393244_2393291 20.00 NA NA NA NA NA NA 20.00 28.57 NA NA 7.69 NA NA NA NA NA NA 20.00 20.00 NA NA NA NA NA NA NA NA NA NA NA NA 12.50 20.00 NA 4.35 NA NA NA 12.50 NA 20.00 NA 28.57 NA NA NA 28.57 28.57 NA NA NA NA NA 40.00 NA NA NA K jcn_only_AA dwg,RI_chrX_2622297_2622355,RI_chrX_2622297_2622430,RI_chrX_2622435_2622577,RI_chrX_2627170_2627263 chrX + chrX_2622297_2622577;chrX_2622297_2622355 chrX_2622297_2622430 chrX_2622197_2622296;chrX_2622578_2622677 8.59 5.56 6.38 10.87 7.69 4.88 14.81 1.75 4.35 16.22 14.29 2.41 10.00 0.00 6.38 10.91 10.00 10.00 11.11 6.19 6.25 42.11 7.94 9.62 15.91 11.11 14.52 8.16 10.53 3.85 28.57 10.00 9.68 3.77 15.15 30.77 7.35 5.00 8.43 8.75 11.11 6.33 10.00 10.53 5.17 10.26 4.35 7.25 6.41 5.88 9.72 NA 2.00 15.09 2.44 11.32 2.17 2.63 K intron_retention G-ialpha65A,I_chr3L_6967574_6972726 chr3L - chr3L_6967033_6967101 chr3L_6967032_6967033;chr3L_6967101_6967102 chr3L_6966938_6967032;chr3L_6967102_6967573 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.58 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.13 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Rab11,I_chr3R_16937578_16940474,I_chr3R_16937759_16939667,RE_chr3R_16939259_16939667 chr3R + chr3R_16937578_16939667 chr3R_16939259_16939667 chr3R_16939668_16939767;chr3R_16937478_16937577 0.29 0.41 0.51 0.10 0.20 0.59 0.24 0.08 0.43 0.00 1.48 0.89 0.19 0.58 0.83 0.24 0.00 0.18 0.14 0.10 0.43 0.99 0.42 0.39 0.37 0.29 0.00 0.00 0.31 0.00 0.16 0.58 0.13 0.41 0.28 0.30 0.00 0.28 0.00 0.45 0.19 0.09 0.40 0.75 0.22 0.32 0.61 0.21 0.49 0.47 0.78 0.00 0.51 0.00 0.29 0.25 0.41 0.27 K intron_retention cul-2,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21661201_21661347 chr2L_21661200_21661201;chr2L_21661347_21661348 chr2L_21660148_21661200;chr2L_21661348_21661465 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Tom40,I_chrX_7631717_7632414 chrX + chrX_7631717_7632414 chrX_7631717_7631905;chrX_7632169_7632414 chrX_7631906_7632168 chrX_7631617_7631716;chrX_7632415_7632514 100.00 100.00 100.00 99.22 100.00 100.00 100.00 100.00 99.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.05 100.00 100.00 100.00 100.00 100.00 98.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.82 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.53 100.00 100.00 100.00 99.06 100.00 100.00 100.00 100.00 N cassette desat1,I_chr3R_8266841_8270520,I_chr3R_8268247_8270520,RI_chr3R_8269415_8270520 chr3R + chr3R_8267331_8270520 chr3R_8267331_8269314;chr3R_8269415_8270520 chr3R_8269315_8269414 chr3R_8267144_8267330;chr3R_8270521_8270620 2.68 0.65 2.99 3.06 4.17 2.69 2.58 1.56 3.68 4.60 5.83 3.67 2.65 1.99 1.90 2.14 2.78 3.24 2.26 4.50 2.82 9.80 2.66 3.65 3.12 2.36 2.27 4.12 2.68 3.92 1.86 2.78 1.84 1.06 3.55 2.14 2.23 0.54 3.32 3.98 0.96 2.94 2.21 0.95 3.57 2.20 2.17 3.33 1.96 2.91 2.79 1.48 1.97 2.16 3.40 1.17 3.57 1.55 K intron_retention CG11266,RI_chr2L_7033019_7034764,I_chr2L_7034274_7035406,RI_chr2L_7034911_7035074,I_chr2L_7051093_7051366 chr2L + chr2L_7035562_7035636 chr2L_7035561_7035562;chr2L_7035636_7035637 chr2L_7035407_7035561;chr2L_7035637_7036035 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 3.88 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention WRNexo chr3R - chr3R_14191702_14191757 chr3R_14191701_14191702;chr3R_14191757_14191758 chr3R_14191633_14191701;chr3R_14191758_14191788 0.00 0.00 0.00 0.00 0.00 5.56 2.44 7.69 0.00 0.00 0.00 4.44 6.90 0.00 3.85 0.00 0.00 0.00 8.00 3.95 0.00 3.57 4.17 0.00 NA 13.33 0.00 NA NA 4.17 6.90 0.00 0.00 0.00 0.00 16.67 0.00 0.00 NA 2.27 11.11 3.12 0.00 3.57 3.45 5.77 1.67 1.52 6.45 0.00 2.63 0.00 0.00 0.00 3.03 0.00 0.00 2.46 K intron_retention Csk,I_chr3R_7463337_7463512,I_chr3R_7468928_7472509 chr3R - chr3R_7460719_7460779 chr3R_7460718_7460719;chr3R_7460779_7460780 chr3R_7460381_7460718;chr3R_7460780_7460866 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N multi_cassette Hr78,I_chr3L_21490089_21490390,CG33214 chr3L - chr3L_21488969_21490390 chr3L_21488969_21489526;chr3L_21489842_21489919;chr3L_21490008_21490390 chr3L_21489527_21489841;chr3L_21489920_21490007 chr3L_21488699_21488968;chr3L_21490391_21490490 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 74.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Bet5 chr3R + chr3R_26006177_26006230 chr3R_26006176_26006177;chr3R_26006230_26006231 chr3R_26005962_26006176;chr3R_26006231_26006373 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 5.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 3.70 0.00 0.00 1.67 0.00 0.00 0.00 K intron_retention Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911708_5913354 chr2R_5911707_5911708;chr2R_5913354_5913355 chr2R_5911703_5911707;chr2R_5913355_5913433 50.00 NA 52.63 66.67 40.00 NA 53.85 46.88 51.35 NA 58.33 60.00 72.73 46.15 60.00 52.00 41.18 70.00 43.75 61.29 46.67 41.67 44.44 23.08 NA 90.00 NA NA NA NA 58.82 NA NA 50.00 54.55 NA 30.77 NA 26.67 40.00 NA 48.48 58.33 22.22 NA 45.45 NA 38.46 60.61 NA 50.00 NA NA NA 44.00 NA NA NA K jcn_only_AA plexA,I_chr4_1035473_1035591,RI_chr4_1036247_1047588,RI_chr4_1040642_1047395,RF_chr4_1044307_1047399 chr4 - chr4_1035473_1035591 chr4_1035535_1035591 chr4_1035592_1035691;chr4_1035404_1035472 100.00 100.00 100.00 98.52 100.00 100.00 99.39 100.00 99.35 NA 100.00 98.73 100.00 98.70 100.00 99.35 95.38 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.86 100.00 96.88 100.00 98.25 100.00 100.00 98.10 100.00 97.37 93.55 100.00 100.00 96.97 100.00 98.57 98.86 100.00 NA 100.00 100.00 100.00 99.44 98.33 100.00 97.37 100.00 100.00 97.73 97.62 98.25 100.00 K intron_retention CG14290,RI_chr3R_14754008_14754110 chr3R - chr3R_14754037_14754110 chr3R_14754036_14754037;chr3R_14754110_14754111 chr3R_14753942_14754036;chr3R_14754111_14754179 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 K jcn_only_AA None chrU + chrU_1184302_1184359 chrU_1184302_1184352 99.69 99.33 99.44 100.00 99.14 99.30 99.65 100.00 99.30 100.00 100.00 99.70 98.88 99.40 99.47 99.69 99.38 100.00 100.00 99.12 100.00 100.00 100.00 99.42 100.00 99.17 100.00 100.00 100.00 98.21 99.63 99.21 99.05 100.00 99.21 99.14 100.00 97.85 100.00 100.00 100.00 99.68 99.42 100.00 100.00 99.17 100.00 99.25 100.00 99.22 100.00 100.00 100.00 100.00 99.13 99.40 99.57 100.00 K alternative_donor CG6006 chr3R + chr3R_11983962_11984579;chr3R_11984036_11984579;chr3R_11984029_11984579;chr3R_11984018_11984579 chr3R_11984096_11984579 chr3R_11984580_11984637;chr3R_11983945_11983961 12.50 12.50 6.25 10.00 NA 10.00 8.33 23.08 19.05 NA 0.00 13.04 12.50 16.67 13.33 7.69 22.22 7.69 27.27 9.09 14.29 14.29 9.52 12.50 11.11 22.22 11.76 20.00 25.00 0.00 16.67 0.00 25.00 15.79 12.50 12.50 14.29 9.09 13.33 15.79 0.00 17.39 16.67 10.00 NA 8.33 11.11 10.00 13.79 0.00 11.11 16.67 14.29 20.00 7.69 12.50 0.00 0.00 K intron_retention CG6654,I_chr3R_11042070_11042139 chr3R - chr3R_11039123_11039187 chr3R_11039122_11039123;chr3R_11039187_11039188 chr3R_11037985_11039122;chr3R_11039188_11039424 0.00 NA NA NA NA NA NA NA 11.76 NA NA 7.69 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 NA 7.69 NA NA NA NA NA NA 4.76 NA NA 0.00 7.14 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 K alternative_acceptor par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350437_15351846 chr2R_15350437_15351814 chr2R_15350337_15350436;chr2R_15351847_15351914 63.64 NA NA 60.00 NA NA 75.00 66.67 63.16 NA NA 63.64 NA 70.00 NA 69.23 75.00 NA NA 58.33 NA 44.44 55.56 NA NA 70.00 NA NA NA NA 41.67 NA NA 52.63 NA NA NA NA NA NA NA 72.73 66.67 NA NA NA NA NA 35.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA His3_3B,I_chrX_9048718_9050612,RI_chrX_9048719_9050312,I_chrX_9048719_9050361,I_chrX_9048719_9050368,RI_chrX_9050411_9050612 chrX - chrX_9048719_9050612 chrX_9050411_9050612 chrX_9050613_9050712;chrX_9048619_9048718 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.22 0.09 0.00 0.00 0.00 0.06 0.11 0.00 0.00 0.10 0.00 0.10 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.06 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.14 0.11 0.00 0.00 0.00 0.00 0.00 0.12 0.00 K intron_retention CG12576,RI_chrX_21878289_21882347,I_chrX_21882735_21882809,I_chrX_21882735_21883407,I_chrX_21882735_21883467,I_chrX_21882735_21883620,I_chrX_21882735_21883714 chrX - chrX_21882732_21883750 chrX_21882731_21882732;chrX_21883750_21883751 chrX_21882635_21882731;chrX_21883751_21883814 16.66 NA NA 35.71 NA NA 25.00 20.00 8.33 NA NA NA NA NA NA 28.57 NA NA NA 9.09 NA NA NA NA NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA 21.43 NA NA NA NA NA NA NA NA 0.00 K alternative_donor CG8632,CG8646 chr2R + chr2R_8540631_8540686 chr2R_8540633_8540686 chr2R_8540687_8541563;chr2R_8540362_8540630 93.33 90.91 100.00 94.74 NA 88.89 90.91 100.00 95.00 NA NA 94.74 NA 80.00 100.00 100.00 NA 92.31 100.00 87.50 100.00 90.91 92.86 93.33 90.00 100.00 93.75 NA 86.67 100.00 90.91 100.00 90.00 100.00 NA 90.91 92.31 100.00 81.25 96.55 86.67 93.75 88.89 93.33 93.33 94.44 90.91 95.45 95.00 87.50 91.67 88.89 87.50 100.00 91.67 100.00 NA 90.00 K alternative_acceptor CG1161 chr3R + chr3R_1181851_1181905 chr3R_1181851_1181899 chr3R_1181725_1181850;chr3R_1181906_1181931 100.00 100.00 91.67 100.00 100.00 100.00 94.12 100.00 96.67 NA NA 100.00 93.33 100.00 100.00 100.00 100.00 93.33 100.00 97.14 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 90.00 100.00 95.45 100.00 100.00 100.00 100.00 91.67 NA 100.00 94.44 100.00 100.00 100.00 K alternative_acceptor CG17082,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_645254_645312;chr2R_645254_645316 chr2R_645254_645306 chr2R_645185_645253;chr2R_645317_645382 92.86 85.71 100.00 94.44 90.00 91.67 96.88 93.55 91.18 87.50 92.31 87.10 94.12 76.47 94.44 90.91 93.75 100.00 89.47 92.00 84.62 NA 100.00 95.00 100.00 93.75 100.00 88.89 100.00 90.91 90.00 85.71 100.00 94.12 92.31 90.91 90.00 88.89 100.00 95.24 92.86 97.14 94.44 71.43 91.67 95.00 88.89 90.00 94.44 95.83 93.75 81.82 100.00 100.00 86.21 91.67 95.45 92.86 K jcn_only_AD Pld,I_chr2R_2130639_2136916,RI_chr2R_2138358_2141112 chr2R + chr2R_2130225_2136916 chr2R_2130258_2136916 chr2R_2136917_2137016;chr2R_2130127_2130224 11.37 NA NA 26.09 NA NA NA 4.17 9.09 NA NA NA NA NA NA NA NA NA NA 7.41 NA NA NA NA NA NA NA NA NA NA NA NA NA 18.18 NA NA 0.00 NA 15.00 NA NA 13.64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG4747 chr2L + chr2L_10006418_10006474 chr2L_10006417_10006418;chr2L_10006474_10006475 chr2L_10005568_10006417;chr2L_10006475_10006585 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG2201 chr2L - chr2L_21615527_21615607 chr2L_21615526_21615527;chr2L_21615607_21615608 chr2L_21615103_21615526;chr2L_21615608_21615676 0.00 0.00 2.13 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10260 chrX + chrX_2519147_2519604 chrX_2519146_2519147;chrX_2519604_2519605 chrX_2519051_2519146;chrX_2519605_2519818 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27.59 0.00 0.00 0.00 0.00 2.78 7.14 0.00 0.00 4.76 0.00 1.92 0.00 0.00 2.00 0.00 1.45 2.78 0.00 NA 1.64 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention svr,RI_chrX_421417_421591 chrX + chrX_396970_397394 chrX_396969_396970;chrX_397394_397395 chrX_396869_396969;chrX_397395_397499 97.78 94.74 92.86 100.00 100.00 100.00 96.67 96.67 98.00 88.89 94.74 100.00 100.00 94.44 100.00 100.00 100.00 95.00 100.00 97.56 86.67 80.95 94.44 100.00 NA 100.00 91.67 90.91 NA 95.65 92.86 86.67 96.55 100.00 100.00 100.00 88.24 100.00 92.31 92.86 100.00 100.00 100.00 100.00 80.00 91.30 NA 94.74 97.30 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 96.67 K alternative_acceptor B52,F_chr3R_9488762_9491174,E_chr3R_9488770_9491174,RI_chr3R_9489655_9489713 chr3R + chr3R_9489655_9489733 chr3R_9489655_9489713 chr3R_9489631_9489654;chr3R_9489734_9489796 22.22 35.71 15.79 NA NA NA 31.25 45.45 46.88 20.00 23.53 27.78 38.46 31.25 40.00 32.00 33.33 29.41 41.18 28.57 17.65 29.41 21.43 16.00 11.11 NA 11.76 7.14 12.50 17.65 17.78 17.65 13.04 27.27 30.77 0.00 18.42 9.09 25.00 16.67 NA 32.14 40.00 19.51 29.41 12.50 14.29 21.43 35.71 15.00 11.76 22.22 NA 33.33 30.00 13.64 15.38 25.00 K intron_retention CG3074,E_chr2R_18078002_18079006,I_chr2R_18079355_18089994 chr2R - chr2R_18079073_18079166 chr2R_18079072_18079073;chr2R_18079166_18079167 chr2R_18079007_18079072;chr2R_18079167_18079354 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr2R_4927307_4927362,Ance-4,CG8193 chr2R - chr2R_4931087_4931141 chr2R_4931086_4931087;chr2R_4931141_4931142 chr2R_4930991_4931086;chr2R_4931142_4932203 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.46 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 K alternative_acceptor CG7231 chr2L + chr2L_7985769_7985833 chr2L_7985769_7985814 chr2L_7985553_7985768;chr2L_7985834_7986075 3.33 NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA 13.64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA K intron_retention CG13295 chr3L - chr3L_6068073_6068132 chr3L_6068072_6068073;chr3L_6068132_6068133 chr3L_6067949_6068072;chr3L_6068133_6068341 0.00 0.00 0.00 0.00 0.00 0.00 1.92 3.70 2.44 0.00 3.23 0.00 0.00 0.00 4.44 0.00 3.23 2.56 0.00 2.70 0.00 0.00 0.00 4.76 0.00 5.56 2.82 0.00 17.65 2.00 4.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 5.56 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG12213 chr3R - chr3R_7791209_7791266 chr3R_7791208_7791209;chr3R_7791266_7791267 chr3R_7791147_7791208;chr3R_7791267_7792008 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3L_1494947_1496080,pUf68,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499880_1500244 chr3L_1499879_1499880;chr3L_1500244_1500245 chr3L_1499780_1499879;chr3L_1500245_1500308 53.85 63.64 NA 42.11 NA NA NA 56.25 72.73 NA 73.33 51.72 29.27 92.86 60.00 87.50 66.67 NA 75.00 81.25 NA 33.33 60.00 50.00 54.55 NA 63.64 36.36 NA 53.85 45.45 NA 35.71 73.33 69.23 36.36 46.15 NA NA 75.00 NA 69.23 NA 43.48 NA 47.06 37.50 42.86 81.25 43.75 38.10 30.77 NA NA 58.33 31.58 NA 50.00 K intron_retention CG32243 chr3L - chr3L_4540231_4540294 chr3L_4540230_4540231;chr3L_4540294_4540295 chr3L_4540085_4540230;chr3L_4540295_4540653 0.00 0.00 0.00 5.06 0.00 0.00 3.75 0.86 0.00 NA 6.25 1.41 0.00 0.00 0.00 0.00 0.00 0.00 1.64 1.15 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22818652_22831505 chr2L_22818652_22820169;chr2L_22820498_22831505 chr2L_22820170_22820497 chr2L_22818298_22818651;chr2L_22831506_22831546 100.00 98.78 100.00 99.22 100.00 98.63 99.48 99.47 99.52 100.00 100.00 100.00 98.96 100.00 98.86 99.40 100.00 100.00 100.00 98.77 100.00 100.00 100.00 98.73 98.25 100.00 98.84 100.00 97.44 100.00 99.34 97.37 100.00 99.47 100.00 98.25 100.00 100.00 96.61 98.96 97.67 99.46 100.00 100.00 100.00 100.00 100.00 98.55 99.49 98.11 99.08 100.00 100.00 100.00 100.00 98.25 98.78 100.00 K intron_retention CG14701,RI_chr3R_7061265_7061322 chr3R + chr3R_7057847_7057915 chr3R_7057846_7057847;chr3R_7057915_7057916 chr3R_7057674_7057846;chr3R_7057916_7057990 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 6.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 5.56 0.00 6.45 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 1.27 0.00 0.00 0.00 0.00 K intron_retention ena chr2R + chr2R_15039533_15046238 chr2R_15039532_15039533;chr2R_15046238_15046239 chr2R_15039410_15039532;chr2R_15046239_15046560 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.93 0.00 0.00 0.00 1.94 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG8001 chr3L + chr3L_1757204_1757321 chr3L_1757204_1757306 chr3L_1756612_1757203;chr3L_1757322_1758146 0.00 0.00 0.00 1.52 0.00 1.96 0.00 1.85 1.30 5.00 3.57 1.43 0.00 3.33 0.00 0.00 4.35 2.38 0.00 0.93 0.00 0.00 1.82 0.00 0.00 2.56 2.50 0.00 1.52 1.96 0.00 1.61 1.12 1.67 0.00 0.00 2.94 0.00 2.70 0.00 1.92 0.00 0.00 0.00 0.00 1.47 0.00 0.93 1.23 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.95 K intron_retention Bruce chr3R - chr3R_6139361_6139434 chr3R_6139360_6139361;chr3R_6139434_6139435 chr3R_6138932_6139360;chr3R_6139435_6139903 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RpL36A,I_chr2L_8042126_8042468,snoRNA:Psi28S-2648 chr2L - chr2L_8042126_8042468 chr2L_8042126_8042439 chr2L_8042026_8042125;chr2L_8042469_8042568 99.98 100.00 100.00 99.99 100.00 99.96 99.98 99.99 99.98 100.00 99.97 100.00 99.95 100.00 99.98 99.98 100.00 99.98 99.98 99.97 99.98 99.97 100.00 99.98 100.00 100.00 99.98 100.00 99.98 99.98 100.00 99.96 99.99 99.99 99.97 99.91 99.93 100.00 99.99 99.99 99.95 99.96 99.97 99.97 99.95 99.97 100.00 100.00 99.98 100.00 99.96 100.00 99.96 100.00 99.98 99.98 99.99 99.97 K alternative_donor bif,I_chrX_11581793_11583233 chrX + chrX_11573223_11574876 chrX_11573323_11574876 chrX_11574877_11575147;chrX_11573031_11573222 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 94.74 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 94.12 100.00 100.00 100.00 NA NA 100.00 NA 100.00 92.31 NA 100.00 NA 85.71 NA 100.00 NA NA 100.00 K jcn_only_AA CG7414,I_chr3L_21819515_21819581 chr3L + chr3L_21819515_21819581 chr3L_21819515_21819574 chr3L_21819415_21819514;chr3L_21819582_21819681 100.00 100.00 99.63 100.00 100.00 100.00 100.00 100.00 99.79 100.00 99.47 99.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.80 100.00 100.00 100.00 100.00 98.60 100.00 100.00 99.13 100.00 100.00 100.00 99.46 100.00 100.00 99.72 99.81 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.49 99.74 100.00 99.16 100.00 100.00 100.00 100.00 100.00 100.00 99.27 K cassette Atpalpha,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16783890_16789446;chr3R_16785103_16789446 chr3R_16783890_16786447,chr3R_16785103_16786447;chr3R_16786552_16789446 chr3R_16786448_16786551 chr3R_16783790_16783889;chr3R_16789447_16789578 2.56 1.59 1.64 0.83 1.39 2.27 0.66 2.04 1.95 4.17 16.46 4.35 2.04 2.56 0.00 1.75 0.98 1.85 0.00 4.48 4.29 1.45 2.70 2.44 2.56 0.00 3.57 6.25 16.67 5.00 5.00 0.00 4.44 1.23 3.17 0.00 5.00 3.03 2.63 4.23 7.14 0.62 1.64 1.47 6.67 5.00 5.26 2.78 0.65 2.00 2.70 5.26 0.00 2.86 1.15 0.00 10.71 5.26 K jcn_only_AD RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522912_523360;chrX_522912_523215;chrX_522912_523414;chrX_522912_523194;chrX_522912_523323 chrX_522912_523389 chrX_522849_522911;chrX_523415_523436 0.65 0.30 0.56 0.51 0.89 0.72 0.72 0.82 0.79 0.53 0.00 0.33 0.40 1.30 0.71 1.37 0.53 0.00 0.00 1.08 0.00 1.02 0.00 0.50 0.61 0.00 0.28 1.17 1.24 0.71 0.71 0.69 0.54 1.86 0.90 1.23 0.40 0.54 0.00 0.45 1.80 0.82 0.00 0.35 0.65 1.48 0.23 1.72 0.67 1.19 0.88 0.32 0.73 0.53 2.95 0.00 0.59 0.72 K intron_retention dNAT1,CG13319,RI_chr2R_8812301_8816468 chr2R + chr2R_8803570_8805499 chr2R_8803569_8803570;chr2R_8805499_8805500 chr2R_8803506_8803569;chr2R_8805500_8808364 0.00 0.00 0.74 1.20 0.00 0.93 2.24 0.72 1.53 0.00 1.57 0.77 1.69 1.33 0.00 0.00 0.00 0.74 1.01 0.30 0.77 1.69 2.61 1.37 0.00 0.00 5.00 8.11 0.00 0.00 0.00 0.00 2.78 0.00 4.26 0.00 0.00 0.00 0.00 2.25 5.88 0.65 0.00 1.67 0.00 3.70 3.17 0.00 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG42360,RI_chr2R_20495045_20495115,RI_chr2R_20497443_20497538 chr2R + chr2R_20496817_20496876 chr2R_20496816_20496817;chr2R_20496876_20496877 chr2R_20496622_20496816;chr2R_20496877_20497442 0.00 NA NA 9.52 NA NA 19.05 11.76 0.00 NA 0.00 0.00 NA 0.00 0.00 17.65 NA 0.00 NA 5.13 NA 0.00 NA NA NA NA NA NA NA NA 14.81 NA NA 3.33 NA NA 0.00 NA NA 0.00 NA 7.41 NA 0.00 NA NA NA NA 6.90 NA NA NA NA NA 0.00 NA NA 7.41 K intron_retention CG34133,F_chr3R_25696884_25696960 chr3R + chr3R_25695777_25696781 chr3R_25695776_25695777;chr3R_25696781_25696782 chr3R_25695572_25695776;chr3R_25696782_25696871 0.00 0.00 0.00 1.96 0.00 0.00 12.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AA Dscam,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3251271_3255892;chr2R_3254472_3255892;chr2R_3253610_3255892;chr2R_3250700_3255892;chr2R_3252685_3255892;chr2R_3252399_3255892;chr2R_3250996_3255892;chr2R_3254133_3255892;chr2R_3252123_3255892;chr2R_3252988_3255892 chr2R_3251854_3255892 chr2R_3255893_3255920 6.25 6.06 7.69 7.14 6.25 23.81 7.41 9.76 4.29 NA NA 14.29 NA 0.00 13.95 13.33 9.52 NA 0.00 2.22 9.38 6.67 5.77 2.56 10.53 3.33 4.08 4.17 0.00 18.60 8.33 NA 10.91 10.87 7.69 7.69 3.03 6.45 4.62 5.97 NA 3.92 15.00 5.13 NA 4.35 3.70 8.82 5.56 0.00 15.91 8.70 NA NA 4.00 4.35 0.00 NA K intron_retention CG3008,CG15625 chr2L + chr2L_4884340_4884390 chr2L_4884339_4884340;chr2L_4884390_4884391 chr2L_4883646_4884339;chr2L_4884391_4885670 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.84 0.00 0.71 0.00 1.62 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Tsp42El chr2R + chr2R_2934941_2935005 chr2R_2934940_2934941;chr2R_2935005_2935006 chr2R_2934782_2934940;chr2R_2935006_2935161 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 5.56 0.00 NA 0.00 0.00 7.69 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Shawn_Tyler,CG14213 chrX + chrX_19533110_19533177 chrX_19533109_19533110;chrX_19533177_19533178 chrX_19532929_19533109;chrX_19533178_19533426 86.17 88.73 82.61 85.60 85.48 88.73 93.00 86.73 89.93 80.95 84.21 81.13 91.49 89.23 87.50 87.95 90.32 78.57 93.33 88.52 77.78 81.97 82.61 87.18 90.38 90.41 88.89 88.89 87.27 84.44 80.30 92.50 86.67 83.47 89.23 95.83 77.63 80.77 82.72 79.80 86.54 90.85 85.25 80.56 82.35 86.17 83.33 90.91 87.05 85.71 84.44 80.95 79.59 85.71 90.22 87.50 83.13 76.74 K jcn_only_AA CG8184,I_chrX_15620707_15620769 chrX + chrX_15615433_15615596 chrX_15615433_15615578 chrX_15610325_15615432;chrX_15615597_15617013 71.15 70.49 69.35 81.58 65.31 78.57 52.38 62.24 63.64 72.41 67.24 69.15 68.42 75.68 64.63 72.41 64.41 76.09 75.61 62.50 71.15 79.73 75.00 64.81 61.11 76.36 71.88 74.19 70.83 73.88 80.00 NA 75.81 71.25 69.49 78.57 74.02 64.18 73.39 68.10 78.43 74.15 65.22 74.73 66.67 69.05 64.52 73.87 70.10 61.90 64.52 76.32 59.26 NA 71.43 76.00 60.00 75.00 K intron_retention Gmer chr2R - chr2R_18775931_18775988 chr2R_18775930_18775931;chr2R_18775988_18775989 chr2R_18775373_18775930;chr2R_18775989_18776103 0.00 6.67 3.45 0.00 NA 0.00 3.85 0.00 7.32 NA 0.00 4.55 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.70 0.00 20.00 0.00 0.00 0.00 5.56 8.82 NA 21.05 0.00 16.13 0.00 0.00 8.00 0.00 3.85 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 4.76 0.00 6.67 0.00 0.00 0.00 0.00 2.27 2.86 K jcn_only_AA CG3760,CG3770,CG12851 chr2R + chr2R_20826741_20826793;chr2R_20826741_20826796 chr2R_20826741_20826799 chr2R_20826672_20826740;chr2R_20826800_20826860 1.43 0.60 0.71 2.16 0.85 5.22 1.98 1.37 0.40 2.40 2.97 0.00 0.00 1.10 2.36 2.06 3.85 1.06 0.00 1.61 2.73 1.06 2.29 0.74 1.88 1.90 2.79 3.33 0.81 1.84 0.00 1.12 2.11 4.32 2.20 0.67 1.24 0.68 1.04 0.35 1.44 2.05 1.19 1.44 0.84 1.50 1.41 0.86 3.24 0.89 1.14 0.74 1.43 1.72 1.63 2.03 2.02 1.22 K alternative_donor l(2)k05819,I_chr2L_4396173_4396266 chr2L + chr2L_4396173_4396809;chr2L_4396407_4396809 chr2L_4396128_4396809 chr2L_4396810_4396906;chr2L_4396073_4396127 53.21 50.82 48.65 38.24 51.39 52.38 46.23 51.52 56.74 61.11 34.48 67.65 55.56 41.38 41.18 50.50 59.09 36.67 32.26 49.40 46.88 60.38 56.98 48.57 64.41 18.03 42.70 18.75 64.18 56.00 55.07 33.33 70.89 53.21 56.82 42.22 62.41 70.00 60.91 54.55 62.50 55.17 42.59 62.24 51.72 52.50 54.55 65.00 51.75 36.36 58.11 52.83 68.75 64.29 41.86 63.16 70.21 76.19 K intron_retention CG13025 chr3L - chr3L_16771254_16771314 chr3L_16771253_16771254;chr3L_16771314_16771315 chr3L_16770689_16771253;chr3L_16771315_16772872 0.00 0.00 NA 10.00 NA NA 14.29 0.00 3.33 NA NA 23.53 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 8.00 NA NA NA NA NA 20.00 9.09 6.06 NA NA NA NA NA 5.88 NA 0.00 K jcn_only_AD nes chr3L - chr3L_19253331_19253632;chr3L_19253331_19253609;chr3L_19253331_19253676;chr3L_19253331_19253648;chr3L_19253331_19253745;chr3L_19253331_19253764 chr3L_19253331_19253636 chr3L_19253215_19253330;chr3L_19253765_19253779 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.00 4.35 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 1.33 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2392054 chrX_2387249_2388436;chrX_2388671_2389073;chrX_2389272_2389644;chrX_2389762_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054 chrX_2388437_2388670;chrX_2389074_2389271;chrX_2389645_2389761;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2392055_2392148 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA 66.67 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA K alternative_donor CG12182,I_chr3L_2599071_2599124,I_chr3L_2629527_2629921 chr3L - chr3L_2599071_2599264 chr3L_2599071_2599124 chr3L_2598971_2599070;chr3L_2599265_2599380 25.00 NA NA NA NA NA NA 25.00 7.69 NA NA 30.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Glued chr3L + chr3L_13922588_13922750 chr3L_13922642_13922750 chr3L_13922751_13922815;chr3L_13922526_13922587 97.22 88.57 95.92 94.37 NA 98.11 95.00 94.03 97.22 100.00 96.77 97.56 100.00 97.50 100.00 98.61 NA 93.33 100.00 100.00 94.87 96.00 94.37 96.92 96.55 100.00 87.18 96.97 96.55 100.00 91.18 100.00 97.92 96.30 97.22 93.88 93.02 100.00 97.87 95.59 96.55 97.62 NA 97.67 100.00 100.00 100.00 98.21 98.68 95.24 97.06 97.73 100.00 NA 92.31 87.50 100.00 96.77 K jcn_only_AD CG11309,I_chr3L_21297192_21297708 chr3L - chr3L_21297192_21297389;chr3L_21297192_21297487 chr3L_21297192_21297542 chr3L_21297092_21297191;chr3L_21297543_21297554 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA 2.08 NA NA 0.00 0.00 NA NA NA 4.76 NA NA NA NA 0.00 NA 3.03 0.00 0.00 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA 0.00 2.78 NA NA NA NA NA 0.00 NA 0.00 0.00 K intron_retention scny,I_chr3L_5763034_5768288 chr3L + chr3L_5763034_5764717 chr3L_5763033_5763034;chr3L_5764717_5764718 chr3L_5762934_5763033;chr3L_5764718_5764893 8.20 9.30 8.20 7.69 7.55 8.00 7.32 5.56 8.33 8.00 8.00 7.45 8.51 6.52 8.00 8.22 9.80 9.52 5.56 8.20 7.55 13.41 11.71 10.34 6.98 11.76 9.52 7.87 8.22 7.14 12.24 8.93 8.33 7.23 6.90 6.56 6.37 10.87 7.78 9.39 2.78 8.91 13.73 10.08 12.07 8.57 8.16 4.35 9.30 6.38 9.01 9.09 5.97 5.71 7.27 14.75 10.00 4.04 K intron_retention b6,CG14798 chrX + chrX_1581351_1582513 chrX_1581350_1581351;chrX_1582513_1582514 chrX_1580553_1581350;chrX_1582514_1582607 87.50 66.67 NA NA 87.50 NA 90.91 77.78 89.47 NA NA NA NA 72.73 72.73 NA NA 87.50 NA 88.24 NA NA NA NA NA NA 87.50 NA NA NA 91.67 NA NA 83.33 NA NA 87.50 NA 66.67 NA NA 85.71 66.67 NA NA NA NA NA 60.00 NA 88.89 NA NA NA 88.89 NA NA NA K jcn_only_AD mld,atl chr3R + chr3R_20451535_20457504 chr3R_20451677_20457504 chr3R_20457505_20457813;chr3R_20451524_20451534 2.94 0.00 3.33 2.86 NA 0.00 1.89 6.00 4.76 NA 0.00 2.33 3.85 3.23 11.11 1.79 3.57 NA 0.00 1.56 3.45 0.00 0.00 7.69 NA 7.14 0.00 0.00 12.50 2.27 0.00 9.09 3.23 6.82 0.00 0.00 6.45 7.41 NA 3.03 3.70 9.30 NA 4.48 6.45 0.00 3.12 0.00 1.64 9.09 0.00 7.69 0.00 0.00 2.70 0.00 NA 4.88 K intron_retention CG3831,I_chr2R_18827582_18828137,I_chr2R_18828053_18828484,RI_chr2R_18828192_18828484 chr2R - chr2R_18828053_18828137 chr2R_18828052_18828053;chr2R_18828137_18828138 chr2R_18827953_18828052;chr2R_18828138_18828191 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention Eps-15,I_chr2R_20660319_20660496,CRE_chr2R_20660823_20660880 chr2R - chr2R_20660319_20660463 chr2R_20660318_20660319;chr2R_20660463_20660464 chr2R_20660219_20660318;chr2R_20660464_20660526 0.00 0.93 0.00 2.48 0.00 0.00 2.70 2.26 0.47 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 1.92 0.00 1.22 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.81 0.00 0.00 0.00 3.19 2.08 0.00 0.00 N jcn_only_AA RhoGAP18B chrX - chrX_19047302_19047377 chrX_19047314_19047377 chrX_19047378_19047520;chrX_19047061_19047301 0.00 0.00 0.00 0.00 NA NA 25.53 41.94 27.94 0.00 0.00 27.08 NA NA 0.00 35.48 0.00 28.81 34.38 32.79 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 29.41 29.41 0.00 0.00 0.00 0.00 0.00 0.00 21.62 NA 26.42 NA 0.00 24.10 17.19 0.00 20.00 25.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.70 K intron_retention CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4985955_4986016 chr2L_4985954_4985955;chr2L_4986016_4986017 chr2L_4985862_4985954;chr2L_4986017_4987089 6.67 10.34 5.71 0.00 0.00 6.25 7.41 0.00 7.23 8.70 17.86 5.97 7.14 10.81 6.25 3.51 12.90 6.67 10.71 5.80 13.33 10.53 3.95 5.17 3.92 5.13 4.05 11.76 10.45 6.00 9.80 20.83 11.36 4.35 9.80 8.20 5.36 2.27 5.26 7.37 5.71 2.35 6.67 8.16 20.83 4.26 11.11 8.57 6.76 17.07 7.81 7.50 0.00 4.76 1.92 0.00 8.00 0.00 K jcn_only_AA None chrU + chrU_1178980_1179256;chrU_1178980_1179142 chrU_1178980_1183262 23.81 NA NA NA NA NA NA NA 15.62 NA NA 18.18 NA NA NA 23.81 NA NA 28.57 30.77 NA NA NA NA NA NA NA NA NA NA 10.00 NA NA 42.31 NA NA NA NA NA 10.00 NA 22.22 NA NA NA NA NA NA 29.63 30.00 NA NA NA NA NA NA NA NA K alternative_acceptor spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20336405_20336466;chr2L_20336405_20336469 chr2L_20336405_20336463 chr2L_20336338_20336404;chr2L_20336470_20336529 13.79 14.29 13.64 17.78 20.83 12.12 11.11 14.04 16.88 7.69 13.79 17.54 11.54 16.00 10.81 11.36 12.90 11.11 12.82 16.13 12.00 15.75 16.36 10.64 16.67 8.82 11.63 14.04 15.52 12.50 15.15 10.71 12.07 15.00 16.22 10.81 10.00 19.35 16.00 14.49 12.00 12.35 13.79 8.93 13.46 11.76 16.22 14.06 14.29 18.87 13.64 25.93 11.11 15.15 14.58 13.51 11.36 13.79 K jcn_only_AA blow,RI_chr2R_3470434_3470776 chr2R - chr2R_3472844_3474436 chr2R_3472863_3474436 chr2R_3474437_3474581;chr2R_3472561_3472843 98.53 98.15 100.00 100.00 96.67 97.92 98.33 98.84 100.00 100.00 95.92 98.04 91.43 98.04 100.00 100.00 97.78 100.00 98.18 98.00 100.00 97.62 97.70 96.49 97.50 100.00 100.00 100.00 98.86 98.53 94.29 97.96 98.52 98.95 100.00 100.00 100.00 97.78 97.47 98.35 93.85 98.25 95.24 100.00 100.00 97.86 100.00 97.64 99.13 96.43 98.68 100.00 100.00 100.00 100.00 100.00 98.80 98.39 K intron_retention RPA2,RI_chr2L_20925851_20925909 chr2L - chr2L_20925851_20925913 chr2L_20925850_20925851;chr2L_20925913_20925914 chr2L_20925751_20925850;chr2L_20925914_20925975 2.73 2.23 2.27 1.30 1.38 1.49 3.76 1.32 1.91 2.11 3.85 2.27 3.65 0.81 1.11 0.00 0.76 1.43 2.11 2.45 3.27 7.80 4.74 3.54 9.89 8.93 5.99 4.02 20.22 0.00 5.08 2.63 2.34 2.17 4.30 5.31 2.54 2.17 2.91 3.98 16.36 2.11 0.00 2.91 3.29 3.23 3.24 6.82 2.66 3.29 4.29 2.40 2.08 2.73 3.53 3.90 2.17 4.90 K intron_retention E_chr3R_20923460_20923586,CG33096,CG33095 chr3R + chr3R_20923441_20923586 chr3R_20923440_20923441;chr3R_20923586_20923587 chr3R_20923364_20923440;chr3R_20923587_20923686 100.00 95.00 100.00 100.00 100.00 100.00 100.00 96.88 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 97.83 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 96.88 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N cassette htt,I_chr3R_24527763_24528033,I_chr3R_24542203_24543363 chr3R + chr3R_24547447_24549542 chr3R_24547447_24547531;chr3R_24547720_24549542 chr3R_24547532_24547719 chr3R_24546562_24547446;chr3R_24549543_24549791 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.27 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor wge chr3R - chr3R_18542354_18542655;chr3R_18542387_18542655 chr3R_18542390_18542655 chr3R_18542656_18542685;chr3R_18540256_18542353 4.28 3.23 0.00 5.00 14.29 NA 20.00 0.00 7.32 0.00 NA 3.23 NA 15.38 0.00 11.11 NA NA 10.00 9.68 0.00 10.71 6.98 4.00 4.55 0.00 4.00 10.00 5.71 3.12 7.14 8.33 1.27 0.00 3.57 10.34 2.00 0.00 4.55 8.20 8.00 8.11 9.09 3.12 0.00 5.88 0.00 6.06 10.00 0.00 10.71 0.00 0.00 0.00 0.00 13.33 0.00 2.70 K intron_retention zfh1,C_chr3R_26609726_26610312 chr3R + chr3R_26600420_26609664 chr3R_26600419_26600420;chr3R_26609664_26609665 chr3R_26599709_26600419;chr3R_26609665_26609725 9.26 6.29 5.19 11.11 12.28 14.06 10.67 6.80 7.50 9.35 20.93 8.66 4.65 10.61 15.38 3.28 11.63 15.69 9.52 11.11 10.87 16.73 8.09 8.70 8.80 16.67 8.25 27.27 12.68 12.30 11.76 9.62 6.67 7.38 9.26 10.85 5.41 12.93 5.45 8.90 19.05 7.77 10.26 5.04 6.52 5.56 3.70 11.67 10.55 9.21 6.33 10.64 5.26 5.00 9.80 5.45 8.93 3.45 K intron_retention I_chr3R_22696095_22697413,Rb97D chr3R - chr3R_22699278_22699581 chr3R_22699277_22699278;chr3R_22699581_22699582 chr3R_22698253_22699277;chr3R_22699582_22699720 60.00 61.90 57.14 75.68 59.09 60.00 68.75 68.18 59.26 40.00 61.54 64.41 66.67 69.57 62.96 73.33 69.57 71.43 60.71 67.14 31.25 26.83 58.70 63.16 60.71 50.00 58.97 77.27 54.17 51.52 67.86 59.09 35.48 67.27 60.71 60.00 41.30 42.11 40.43 60.00 68.75 55.32 57.69 53.12 42.31 53.66 60.47 69.57 67.92 50.00 60.00 64.29 60.00 63.16 64.00 56.10 57.45 69.57 K alternative_acceptor RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817 chr2R + chr2R_15330246_15330292;chr2R_15330246_15330317 chr2R_15330246_15330305 chr2R_15330177_15330245;chr2R_15330318_15330383 99.95 99.97 99.92 99.95 99.90 99.96 99.95 99.90 99.98 99.88 99.96 99.98 99.95 99.94 99.94 99.94 99.94 100.00 99.95 99.95 99.87 99.92 99.96 99.95 99.89 100.00 99.92 99.87 99.64 99.89 99.85 100.00 99.96 99.97 99.95 99.92 100.00 99.93 99.97 99.91 99.89 99.98 100.00 100.00 99.95 99.94 99.95 99.95 99.94 99.94 99.95 100.00 99.96 99.93 99.96 99.98 99.98 99.90 K cassette bl,I_chr2R_16481586_16483061 chr2R + chr2R_16475250_16483061 chr2R_16475250_16477121;chr2R_16477173_16483061 chr2R_16477122_16477172 chr2R_16475071_16475249;chr2R_16483062_16483161 4.69 4.65 4.04 13.45 3.28 4.49 0.85 7.33 6.44 4.76 3.77 NA 1.41 4.35 3.19 5.30 6.59 2.88 4.24 19.52 3.33 2.75 4.00 4.55 1.54 1.82 2.25 1.52 9.21 4.40 7.26 7.69 5.88 5.81 7.58 7.50 4.17 3.57 8.22 2.31 5.08 5.26 3.61 2.65 4.94 6.80 7.59 9.79 4.69 1.47 5.38 6.78 6.06 4.69 3.97 6.49 4.71 4.90 K jcn_only_AA Trf,I_chr2L_8073126_8073167 chr2L + chr2L_8073126_8073196 chr2L_8073126_8073167 chr2L_8073026_8073125;chr2L_8073197_8073267 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 2.78 0.00 0.00 0.00 0.00 0.00 0.00 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 2.22 0.00 2.06 0.00 0.00 4.00 0.00 0.00 2.80 1.04 3.33 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 2.20 0.72 K cassette CaMKII,I_chr4_1059085_1060638,I_chr4_1059085_1065781,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1058367_1065781 chr4_1058367_1058984;chr4_1059064_1065781 chr4_1058985_1059063 chr4_1058272_1058366;chr4_1065782_1065874 93.38 92.86 100.00 90.91 87.50 91.30 87.27 92.59 91.30 NA 100.00 89.58 68.00 100.00 83.33 97.62 96.15 100.00 95.00 100.00 93.33 85.71 93.33 93.33 77.78 94.12 84.21 87.50 69.23 100.00 97.22 94.12 90.91 96.36 92.86 93.75 100.00 85.71 100.00 95.65 90.00 86.67 96.67 94.12 100.00 94.12 93.33 85.00 93.44 94.74 93.75 84.62 90.91 90.00 94.29 100.00 95.45 100.00 K alternative_donor CG9293,RI_chr2L_13386386_13386487,I_chr2L_13394941_13395015 chr2L - chr2L_13386258_13386529 chr2L_13386258_13386487 chr2L_13386099_13386257;chr2L_13386530_13386587 4.65 8.33 2.94 4.65 5.00 0.00 11.76 4.17 2.90 0.00 0.00 8.16 0.00 3.45 5.71 5.41 5.00 16.67 0.00 3.53 5.00 2.08 4.35 0.00 NA 6.25 5.88 0.00 10.87 5.26 7.69 6.67 2.78 2.00 4.17 14.81 2.70 5.56 3.23 6.35 8.89 8.00 0.00 6.45 8.24 0.00 0.00 6.74 1.85 7.41 4.76 NA 6.67 0.00 3.03 2.78 3.45 7.94 K intron_retention I_chr2R_8312580_8312637,CG8525 chr2R + chr2R_8313268_8313320 chr2R_8313267_8313268;chr2R_8313320_8313321 chr2R_8313214_8313267;chr2R_8313321_8313904 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.27 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.44 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG32638,I_chrX_13017877_13022283 chrX - chrX_13017877_13022283 chrX_13017877_13020100;chrX_13020248_13022283 chrX_13020101_13020247 chrX_13017807_13017876;chrX_13022284_13022383 100.00 100.00 99.40 99.61 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.57 99.11 100.00 100.00 99.57 100.00 100.00 100.00 100.00 100.00 100.00 99.53 100.00 100.00 100.00 99.42 98.82 92.13 100.00 100.00 100.00 99.46 100.00 100.00 100.00 100.00 100.00 100.00 99.51 100.00 100.00 99.30 99.35 100.00 100.00 99.24 100.00 99.68 99.38 99.35 100.00 100.00 100.00 100.00 100.00 100.00 99.51 K mutually_exclusive ens,I_chr3L_4130719_4131120 chr3L - chr3L_4127163_4128307,chr3L_4128974_4131120;chr3L_4127163_4129650,chr3L_4129792_4131120 chr3L_4127163_4130388,chr3L_4130644_4131120 chr3L_4128308_4128973;chr3L_4129651_4129791 chr3L_4130389_4130643 chr3L_4126989_4127162;chr3L_4131121_4131220 0.72 0.97 1.11 0.72 0.00 0.00 1.03 0.76 0.55 0.00 1.18 0.67 0.00 1.22 1.08 1.64 1.14 0.00 0.00 0.63 1.37 0.65 0.64 0.81 1.01 0.00 0.82 0.00 0.00 0.87 0.88 1.61 0.75 1.37 0.98 1.59 0.56 0.79 0.00 0.52 0.00 0.51 1.37 0.73 0.00 1.15 0.00 0.68 0.70 0.00 0.65 1.05 0.00 0.00 0.98 1.20 0.00 1.32 K intron_retention CG3056,REI_chrX_1265808_1265906 chrX + chrX_1265808_1265947 chrX_1265807_1265808;chrX_1265947_1265948 chrX_1265708_1265807;chrX_1265948_1266006 2.82 0.00 5.71 5.17 0.00 0.00 8.77 2.94 1.87 3.33 0.00 4.05 0.00 0.00 3.33 0.00 3.45 0.00 0.00 1.87 0.00 7.59 2.82 0.00 5.88 4.76 3.90 15.15 0.00 0.00 10.53 3.45 2.27 5.56 4.35 1.96 6.45 4.88 0.00 1.25 6.67 3.61 3.23 2.04 4.65 4.26 0.00 3.08 4.76 8.33 0.00 0.00 0.00 3.45 0.00 1.92 0.00 1.92 K intron_retention CG14130 chr3L + chr3L_11809159_11809222 chr3L_11809158_11809159;chr3L_11809222_11809223 chr3L_11808991_11809158;chr3L_11809223_11809593 0.00 0.00 0.00 NA NA 0.00 8.33 0.00 0.00 NA NA 0.00 NA 7.69 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 5.56 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA NA 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.67 K jcn_only_AD cnc,I_chr3R_19014852_19016738,I_chr3R_19046366_19046507,I_chr3R_19046619_19047567 chr3R - chr3R_19046366_19047563;chr3R_19046366_19047567 chr3R_19046366_19046507 chr3R_19046266_19046365;chr3R_19047568_19047667 5.00 NA NA 20.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.64 NA NA NA NA NA NA NA NA 5.00 NA 4.55 NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA K alternative_donor ben chrX + chrX_13890791_13892127;chrX_13891016_13892127;chrX_13890793_13892127;chrX_13890762_13892127;chrX_13890795_13892127;chrX_13890990_13892127;chrX_13890831_13892127;chrX_13890768_13892127;chrX_13890648_13892127 chrX_13890789_13892127 chrX_13892128_13892800;chrX_13890644_13890647 0.00 NA NA 16.67 NA NA 0.00 0.00 40.00 NA NA 0.00 0.00 0.00 0.00 40.00 NA NA 0.00 33.33 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA 33.33 33.33 NA NA NA NA NA 50.00 NA 0.00 0.00 NA NA 100.00 NA 0.00 16.67 0.00 NA NA NA NA 25.00 NA 33.33 100.00 K intron_retention msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585733_2586413 chr3L_2585732_2585733;chr3L_2586413_2586414 chr3L_2585639_2585732;chr3L_2586414_2586502 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 K jcn_only_AA Ada2b,RI_chr3R_4068335_4068401 chr3R - chr3R_4063905_4064452 chr3R_4063975_4064452 chr3R_4064453_4065328;chr3R_4063825_4063904 44.26 40.00 42.22 37.31 53.12 36.36 31.43 55.77 39.73 47.62 32.14 54.39 59.09 34.38 48.57 51.35 50.00 22.22 53.57 37.78 38.24 59.12 46.15 38.27 45.24 51.61 43.02 53.06 44.94 33.96 47.37 31.37 37.93 44.26 43.24 40.35 50.63 50.79 34.07 45.28 55.81 47.76 37.04 41.18 41.94 41.49 50.00 32.50 52.54 50.00 50.75 40.38 31.43 34.88 48.89 46.00 35.59 48.98 K alternative_acceptor CG3744,I_chr3R_20701248_20701968 chr3R - chr3R_20698972_20699080 chr3R_20699005_20699080 chr3R_20699081_20699684;chr3R_20698660_20698971 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention bigmax,E_chr3R_23113334_23113889 chr3R - chr3R_23113442_23113506 chr3R_23113441_23113442;chr3R_23113506_23113507 chr3R_23113087_23113441;chr3R_23113507_23113569 0.00 0.00 0.00 4.05 0.00 0.00 1.49 0.00 0.00 0.00 0.00 2.70 4.65 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 14.29 0.00 0.00 0.00 0.00 5.56 0.00 12.31 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 1.59 1.64 2.47 1.20 0.00 0.00 0.00 1.16 0.00 2.20 2.82 5.00 5.00 0.00 4.00 0.00 1.67 0.00 1.32 3.08 K intron_retention RnrS,I_chr2R_7872603_7872720 chr2R - chr2R_7872573_7872720 chr2R_7872572_7872573;chr2R_7872720_7872721 chr2R_7872503_7872572;chr2R_7872721_7872820 1.54 0.53 2.20 2.58 0.00 0.59 2.60 1.38 1.57 2.50 1.54 2.49 2.44 1.37 1.49 1.08 1.05 1.96 2.13 1.49 1.32 2.44 2.13 2.08 0.00 0.57 3.21 2.63 2.78 1.85 1.20 2.70 0.00 1.37 1.72 0.00 1.27 1.96 1.27 2.34 3.23 0.58 0.66 2.19 0.00 0.00 1.24 0.00 1.72 1.72 1.09 1.94 1.69 2.05 0.86 0.70 2.56 0.00 K jcn_only_AA Hr78,I_chr3L_21490089_21490390,CG33214 chr3L - chr3L_21490008_21490390;chr3L_21490089_21490390;chr3L_21489978_21490390 chr3L_21490023_21490390 chr3L_21490391_21490490;chr3L_21489920_21489977 22.22 NA NA 23.53 NA NA 16.00 20.59 33.33 NA NA NA 15.00 NA NA 15.15 NA NA NA 34.78 NA NA NA NA NA NA NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA 19.23 NA NA NA NA NA 27.27 NA NA NA K intron_retention CG5646,I_chr3R_23386250_23386484,I_chr3R_23386287_23386484 chr3R - chr3R_23386237_23386484 chr3R_23386236_23386237;chr3R_23386484_23386485 chr3R_23386187_23386236;chr3R_23386485_23386584 17.65 18.75 6.25 4.76 NA 17.65 14.29 10.00 12.77 NA NA 9.09 NA 11.76 17.65 15.38 NA 25.00 12.00 4.76 10.53 37.50 12.82 17.86 NA NA 23.68 14.81 20.00 27.27 10.26 35.29 40.00 15.15 12.50 26.32 9.09 21.74 37.04 29.17 20.00 9.09 31.25 16.22 22.22 16.13 12.50 33.33 23.08 30.00 25.00 11.76 NA 19.05 9.52 19.05 6.25 21.43 K jcn_only_AA Bruce chr3R - chr3R_6141764_6141923 chr3R_6141797_6141923 chr3R_6141924_6143270;chr3R_6141518_6141763 98.01 97.25 99.06 98.76 100.00 96.15 94.51 97.65 97.71 98.11 97.87 97.74 100.00 100.00 97.06 98.52 100.00 96.74 100.00 99.57 98.65 95.95 94.74 95.40 98.86 98.92 96.46 95.89 98.18 96.39 100.00 95.16 98.17 99.29 96.55 99.01 98.01 97.50 98.32 99.33 98.15 98.01 97.85 99.33 86.11 94.32 88.33 96.94 97.07 98.31 95.12 100.00 97.67 98.08 96.55 98.53 96.88 98.84 K intron_retention Trxr-1 chrX + chrX_8138093_8140126 chrX_8138092_8138093;chrX_8140126_8140127 chrX_8137893_8138092;chrX_8140127_8140472 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 2.70 2.27 0.00 0.00 0.00 1.52 0.00 2.63 0.00 0.00 0.00 2.13 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA PyK,CG7069,CG18596,I_chr3R_18203637_18203690,I_chr3R_18209085_18209133 chr3R + chr3R_18193391_18194506;chr3R_18193391_18196509;chr3R_18193391_18196485 chr3R_18193391_18194501 chr3R_18193322_18193390 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG3011,I_chrX_5808814_5808922 chrX - chrX_5808814_5810295 chrX_5808813_5808814;chrX_5810295_5810296 chrX_5808714_5808813;chrX_5810296_5810512 0.00 0.00 0.00 3.45 0.00 0.00 0.00 2.56 0.85 0.00 0.00 4.49 7.41 0.00 0.00 0.00 0.00 2.13 1.89 1.67 0.00 5.41 0.00 5.71 7.69 1.82 0.00 0.00 0.00 0.00 0.00 0.00 3.51 2.11 0.00 0.00 2.04 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 6.06 0.00 0.00 1.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA sda,I_chr3R_22742285_22742350,RI_chr3R_22750984_22752737 chr3R + chr3R_22769923_22769989 chr3R_22769923_22769968 chr3R_22769779_22769922;chr3R_22769990_22770999 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 K intron_retention aru,I_chr2L_864795_867505,snoRNA:Me28S-U1230 chr2L - chr2L_864795_864876 chr2L_864794_864795;chr2L_864876_864877 chr2L_864695_864794;chr2L_864877_865060 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.90 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 3.70 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chr3L_9408567_9410728,RpS17,I_chr3L_9422428_9422797,snoRNA:Psi28S-612 chr3L - chr3L_9422426_9422794 chr3L_9422425_9422426;chr3L_9422794_9422795 chr3L_9422328_9422425;chr3L_9422795_9422827 0.09 0.10 0.03 0.07 0.10 0.09 0.14 0.06 0.07 0.15 0.04 0.09 0.06 0.04 0.09 0.13 0.11 0.04 0.04 0.09 0.05 0.23 0.08 0.08 0.07 0.09 0.21 0.55 0.55 0.00 0.18 0.10 0.06 0.11 0.22 0.75 0.08 0.10 0.08 0.08 0.22 0.09 0.09 0.11 0.07 0.25 0.20 0.13 0.14 0.15 0.16 0.00 0.09 0.54 0.09 0.21 0.12 0.12 K intron_retention CG12065,CE_chrX_8469528_8477573 chrX + chrX_8478289_8478488 chrX_8478288_8478289;chrX_8478488_8478489 chrX_8477574_8478288;chrX_8478489_8478608 0.00 0.00 0.00 0.39 0.00 0.00 0.62 0.29 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 2.08 1.71 0.75 0.90 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.69 0.00 0.00 0.00 0.30 0.00 0.00 0.50 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3368,Hmu chr3R + chr3R_23109627_23109679 chr3R_23109626_23109627;chr3R_23109679_23109680 chr3R_23109482_23109626;chr3R_23109680_23111749 1.92 3.39 2.63 9.30 0.00 0.00 3.03 5.00 0.00 0.00 2.63 5.13 0.00 3.03 2.38 2.86 0.00 4.55 0.00 3.49 0.00 1.92 3.03 1.47 4.44 5.88 3.28 19.15 0.00 0.00 4.76 4.08 1.08 0.00 0.00 2.56 0.79 1.39 1.47 3.70 4.08 5.41 5.88 1.64 2.60 0.00 2.86 0.00 4.23 0.00 0.00 4.26 1.41 0.00 1.92 0.00 0.00 0.00 K intron_retention mys,I_chrX_7958795_7961094 chrX + chrX_7958795_7961094 chrX_7958794_7958795;chrX_7961094_7961095 chrX_7958695_7958794;chrX_7961095_7961194 35.25 33.33 50.00 60.00 28.57 50.00 31.25 59.09 46.67 NA 45.45 59.09 30.77 47.06 42.86 47.62 45.45 29.41 52.38 41.67 60.00 4.88 33.33 18.18 NA 61.54 31.82 25.00 NA 41.18 17.65 NA NA 42.86 15.38 41.67 20.00 20.00 16.67 19.05 NA 35.71 37.50 0.00 NA NA NA 37.50 45.16 16.67 18.92 26.67 NA NA 34.78 23.08 NA NA K cassette Eb1,RI_chr2R_2640290_2642206,I_chr2R_2640494_2642206,I_chr2R_2642491_2642549 chr2R + chr2R_2640494_2642206 chr2R_2640494_2640577;chr2R_2641009_2642206 chr2R_2640578_2641008 chr2R_2640394_2640493;chr2R_2642207_2642306 87.50 93.33 63.64 63.33 63.64 63.64 85.19 75.00 91.67 90.00 100.00 90.00 75.00 88.89 92.31 87.50 69.23 90.00 90.91 77.27 85.71 48.89 86.67 90.48 94.44 87.50 87.50 72.22 93.75 88.89 82.61 90.91 70.97 76.47 85.71 82.14 86.36 86.67 90.91 80.00 94.12 81.48 87.50 68.18 90.91 100.00 100.00 84.00 85.71 88.24 87.50 81.82 100.00 90.00 84.62 91.67 90.91 91.67 K intron_retention CG8412,I_chr3R_5583152_5583200 chr3R + chr3R_5582916_5582977 chr3R_5582915_5582916;chr3R_5582977_5582978 chr3R_5582787_5582915;chr3R_5582978_5583151 23.08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 16.67 NA NA NA NA 25.00 NA NA NA NA NA NA NA 23.08 NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG9572,E_chrX_20048406_20049371 chrX + chrX_20048848_20049131 chrX_20048847_20048848;chrX_20049131_20049132 chrX_20048231_20048847;chrX_20049132_20049506 0.00 0.00 NA NA NA NA 6.25 NA 5.56 NA NA 0.00 NA NA NA NA 7.69 0.00 NA 6.12 NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA 10.53 NA NA 0.00 0.00 2.38 3.85 NA 5.00 NA 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 NA 0.00 0.00 NA 2.63 0.00 NA N alternative_donor Tpi chr3R - chr3R_25959817_25959972;chr3R_25959817_25959887 chr3R_25959817_25960000 chr3R_25959232_25959816;chr3R_25960001_25960005 3.85 2.08 6.15 5.80 1.72 2.04 4.35 5.45 4.42 9.09 4.76 1.96 4.17 7.55 1.52 1.75 1.82 0.00 0.00 1.60 3.39 5.41 5.56 0.00 NA 1.79 0.00 4.55 7.69 3.85 5.88 7.84 16.00 2.99 3.33 0.00 0.00 0.00 4.76 8.33 2.78 3.23 0.00 3.57 9.72 9.68 0.00 17.02 4.35 3.85 4.55 0.00 6.90 2.70 3.80 4.55 10.71 20.37 K intron_retention Tre1,I_chrX_5569518_5570588 chrX - chrX_5569074_5569144 chrX_5569073_5569074;chrX_5569144_5569145 chrX_5568973_5569073;chrX_5569145_5569290 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.68 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.38 0.37 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD RpL17,I_chrX_6637182_6638207,RI_chrX_6637182_6637528,I_chrX_6637182_6637973,snoRNA:Psi28S-1232 chrX - chrX_6637182_6638178;chrX_6637182_6638228;chrX_6637182_6637982 chrX_6637182_6638141 chrX_6637093_6637181;chrX_6638229_6638235 61.72 66.34 66.99 57.93 70.50 69.90 76.52 63.36 69.74 19.44 78.85 72.13 82.79 70.00 62.93 67.03 71.79 75.00 64.36 66.80 68.13 29.06 66.30 59.26 64.37 77.44 42.53 24.72 53.37 22.30 57.02 15.52 11.28 60.91 39.22 29.90 68.34 66.25 63.83 21.41 17.21 66.10 66.36 28.02 31.10 23.32 57.36 11.97 58.87 39.81 71.43 66.10 19.84 60.00 61.72 53.73 40.45 12.52 K jcn_only_AD Rab-RP4,RI_chrX_5565547_5565601 chrX - chrX_5565547_5565635 chrX_5565547_5565601 chrX_5565447_5565546;chrX_5565636_5565701 0.61 0.00 0.00 0.87 0.00 0.79 0.51 0.00 0.82 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.32 0.00 1.28 2.27 1.52 1.50 0.69 0.51 0.74 1.40 1.06 3.11 1.16 1.56 0.53 1.44 2.29 0.72 0.52 0.89 0.95 0.84 0.42 0.00 0.89 0.59 0.70 0.75 0.29 0.41 0.61 1.03 0.00 0.56 1.83 0.69 0.00 0.00 0.80 K cassette Vha100-1,I_chr3R_24958227_24960770,RI_chr3R_24959152_24959582,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24958227_24959582;chr3R_24958227_24960770 chr3R_24958227_24958993;chr3R_24959152_24959582,chr3R_24959152_24960770 chr3R_24958994_24959151 chr3R_24958127_24958226;chr3R_24960771_24960870 54.55 47.22 56.98 61.63 35.82 40.54 51.43 43.69 43.87 59.02 47.37 38.51 76.92 44.62 51.19 55.43 43.64 40.62 68.52 38.89 48.10 43.68 58.72 52.56 71.74 51.28 59.68 70.67 69.90 57.14 33.07 63.93 57.46 37.50 61.63 55.81 50.84 54.87 54.97 51.90 67.65 49.21 42.42 58.82 50.00 55.45 50.00 61.62 49.30 57.30 54.55 55.84 59.49 54.76 46.07 50.00 56.60 63.83 K intron_retention CG2247 chrX - chrX_11503747_11504234 chrX_11503746_11503747;chrX_11504234_11504235 chrX_11503670_11503746;chrX_11504235_11504388 4.35 8.70 0.00 0.00 5.56 NA 9.09 0.00 8.82 NA 0.00 8.57 NA 4.17 0.00 11.54 0.00 0.00 0.00 12.24 NA 9.09 0.00 0.00 0.00 0.00 0.00 15.38 10.00 0.00 5.26 NA 0.00 6.25 0.00 4.35 12.12 13.04 4.35 3.70 NA 11.11 6.25 4.35 0.00 NA 0.00 NA 8.89 5.56 10.34 0.00 NA NA 4.76 NA NA NA K intron_retention CG10462 chr2L - chr2L_19732469_19732572 chr2L_19732468_19732469;chr2L_19732572_19732573 chr2L_19732184_19732468;chr2L_19732573_19732670 90.91 88.89 87.50 100.00 100.00 87.50 96.08 90.41 95.29 92.31 95.00 92.31 92.68 92.68 87.88 90.67 90.91 84.00 95.45 88.89 89.47 78.79 97.67 90.00 90.48 92.00 92.16 95.45 83.33 82.05 92.68 86.00 90.91 90.79 97.06 90.62 90.00 92.86 95.65 90.00 87.23 89.66 96.43 92.68 85.00 89.55 95.56 85.71 95.59 88.89 89.80 92.86 96.43 97.06 86.49 93.02 91.07 89.41 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389272_2395659 chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2393243;chrX_2393712_2395659 chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664;chrX_2393244_2393711 chrX_2389172_2389271;chrX_2395660_2395759 20.00 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Atpalpha,I_chr3R_16783890_16785070,I_chr3R_16788018_16789830,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16785103_16787936 chr3R_16785102_16785103;chr3R_16787936_16787937 chr3R_16785071_16785102;chr3R_16787937_16788017 3.57 2.00 5.00 3.77 NA 0.00 5.00 2.99 1.74 NA NA 1.35 0.00 4.26 0.00 4.62 4.00 0.00 0.00 1.52 0.00 5.56 5.17 2.63 7.69 5.26 9.38 11.11 13.64 6.45 3.64 NA 7.69 3.51 2.00 0.00 2.78 3.85 6.25 2.74 16.67 4.84 8.57 2.53 13.33 0.00 0.00 9.52 8.77 0.00 0.00 3.57 0.00 2.86 3.77 8.33 0.00 0.00 K jcn_only_AD par-1,I_chr2R_15359242_15360944,I_chr2R_15359251_15359544,I_chr2R_15359251_15360944,I_chr2R_15359658_15359771,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15359242_15360323 chr2R_15359251_15360323 chr2R_15360324_15360436;chr2R_15359151_15359241 6.92 6.05 7.10 10.41 5.95 9.87 7.30 10.20 5.94 3.74 3.70 6.61 13.44 8.98 14.14 6.25 9.84 8.45 9.78 6.45 4.91 4.39 6.76 7.00 6.77 12.88 4.99 2.48 8.54 6.48 12.08 7.91 4.30 7.95 6.04 6.93 6.19 7.55 4.58 0.61 5.66 8.84 4.08 5.45 13.28 7.84 6.03 7.50 6.92 6.08 4.47 4.50 9.09 2.82 7.62 7.58 7.37 8.90 K intron_retention CG14057,EI_chr3L_17037760_17037808 chr3L - chr3L_17037760_17037812 chr3L_17037759_17037760;chr3L_17037812_17037813 chr3L_17037660_17037759;chr3L_17037813_17037908 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 1.35 0.00 3.70 0.83 0.00 0.00 0.00 1.39 0.00 0.00 1.72 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 4.44 0.85 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 K alternative_acceptor I_chr2R_13433672_13433749,MESR4 chr2R + chr2R_13436468_13436586 chr2R_13436468_13436573 chr2R_13436391_13436467;chr2R_13436587_13438569 93.75 100.00 90.91 90.91 100.00 93.75 72.73 94.12 97.22 93.75 91.67 93.75 84.62 93.75 94.12 93.10 93.33 95.24 94.12 97.87 91.67 95.65 100.00 85.71 94.12 95.24 88.24 76.47 92.86 84.21 87.50 NA 86.96 96.67 89.47 100.00 95.45 84.62 93.75 100.00 NA 96.77 89.47 80.00 87.50 90.91 NA 95.65 96.43 85.71 94.74 92.86 100.00 NA 100.00 NA NA 93.75 K jcn_only_AA Pcf11,RI_chr2R_10753287_10754988 chr2R - chr2R_10753287_10754988;chr2R_10753557_10754988;chr2R_10753581_10754988;chr2R_10753239_10754988 chr2R_10753272_10754988 chr2R_10754989_10755088;chr2R_10753187_10753238 24.52 23.81 7.69 30.30 9.52 23.53 21.21 25.81 27.08 25.00 26.09 21.62 NA 21.74 25.00 NA 21.74 NA 13.33 24.56 NA 21.88 24.49 13.79 NA 30.00 27.03 24.32 12.50 NA 25.93 NA 17.86 22.22 NA NA 16.36 18.18 34.21 36.17 NA 26.53 NA 28.57 NA 33.33 33.33 33.33 27.91 NA 28.57 NA NA NA 21.74 NA NA NA K alternative_acceptor CG6171,I_chr3R_11188806_11188873,CG34404,CG14868 chr3R - chr3R_11188806_11188873 chr3R_11188820_11188873 chr3R_11188874_11188973;chr3R_11188706_11188805 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 97.62 93.75 100.00 97.50 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 96.43 94.74 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 K intron_retention I_chr3L_203620_207231,CG7028,I_chr3L_207277_208117 chr3L - chr3L_207277_208089 chr3L_207276_207277;chr3L_208089_208090 chr3L_207232_207276;chr3L_208090_208317 69.23 68.97 60.87 72.00 69.23 53.33 72.34 81.03 75.51 58.33 76.92 66.67 82.35 75.86 68.00 80.85 58.33 63.16 70.83 68.52 61.54 88.89 60.00 57.69 68.75 61.11 70.97 91.67 73.33 65.00 48.00 61.11 80.00 80.00 86.67 76.92 50.00 61.54 61.54 67.86 87.50 70.59 80.95 71.43 69.57 73.53 60.00 85.19 74.55 61.11 59.26 73.33 70.00 66.67 60.71 64.52 66.67 87.10 K jcn_only_AA CG14235,noncoding_24847,CG18809,noncoding_24848 chrX - chrX_19637712_19638294 chrX_19637740_19638294 chrX_19638295_19638317;chrX_19637634_19637711 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 98.10 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 97.50 NA NA 100.00 100.00 97.78 100.00 100.00 98.63 NA NA 100.00 97.14 100.00 100.00 NA 98.53 100.00 97.22 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 97.22 96.77 100.00 NA K jcn_only_AA l(2)NC136,I_chr2R_1545723_1546024 chr2R - chr2R_1545081_1545147;chr2R_1545003_1545147 chr2R_1545087_1545147 chr2R_1545148_1545722;chr2R_1544877_1545002 97.78 98.08 98.95 99.03 97.52 96.91 97.30 98.21 98.15 97.78 100.00 98.54 99.05 95.19 98.55 97.21 97.67 98.23 98.55 98.03 99.00 97.87 94.35 96.45 98.10 95.00 95.89 85.71 95.38 95.24 99.41 97.83 94.74 97.88 98.88 100.00 98.77 96.67 98.50 97.48 97.50 98.29 100.00 92.92 95.89 97.44 98.25 97.30 97.80 97.95 100.00 96.08 97.73 97.26 97.20 97.35 97.75 96.74 K jcn_only_AD CG17385,I_chr2R_10298790_10298843 chr2R - chr2R_10298790_10298841;chr2R_10298790_10298847 chr2R_10298790_10298843 chr2R_10298690_10298789;chr2R_10298848_10298916 0.00 0.82 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.94 0.00 0.30 0.48 0.00 0.00 0.34 0.55 0.00 0.00 0.00 0.00 0.32 1.18 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.41 0.00 0.22 0.00 0.00 0.20 0.35 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 K alternative_donor CG11658,I_chr3L_11704048_11704107 chr3L - chr3L_11700672_11701507;chr3L_11700672_11701491 chr3L_11700672_11701407 chr3L_11700405_11700671;chr3L_11701508_11701663 14.36 NA NA NA NA 25.00 27.27 NA 33.33 NA 33.33 25.00 16.67 NA NA 10.00 25.00 NA 22.22 9.52 NA NA 20.00 11.11 25.00 NA 8.33 NA 11.11 NA NA NA 12.50 25.00 NA 9.09 NA NA 11.11 12.50 NA 12.50 NA NA NA 7.69 13.33 7.14 15.38 NA 22.22 NA NA NA NA NA NA NA K jcn_only_AD vkg,I_chr2L_5027222_5027297,I_chr2L_5027222_5028118 chr2L - chr2L_5027222_5028118;chr2L_5027222_5027351 chr2L_5027222_5027297 chr2L_5027122_5027221;chr2L_5028119_5028218 9.95 7.39 7.46 10.70 2.94 5.56 11.81 14.66 6.95 11.76 3.69 13.77 13.96 11.33 16.08 6.51 6.83 11.52 9.52 15.10 7.91 18.18 11.29 7.54 9.52 9.62 9.74 5.41 12.00 12.77 6.94 10.68 17.19 10.43 24.64 29.51 3.54 2.26 5.67 10.55 12.70 7.87 10.92 6.12 17.50 13.79 8.22 13.22 12.46 7.75 4.96 9.95 10.45 17.50 8.84 7.78 6.72 7.45 K jcn_only_AD Mi-2 chr3L - chr3L_19881715_19903142 chr3L_19881715_19881800 chr3L_19881638_19881714;chr3L_19903143_19903321 2.70 1.85 1.75 0.00 10.34 3.57 2.82 0.92 3.06 13.16 5.71 4.72 8.57 2.99 3.23 0.95 0.00 5.36 1.75 3.45 0.00 8.11 3.33 4.65 5.36 3.53 0.00 1.33 0.00 5.00 2.74 0.00 1.57 1.10 1.56 4.17 0.00 7.50 1.61 2.80 2.27 1.87 4.00 3.49 0.00 3.45 2.27 0.00 2.40 14.29 3.66 0.00 2.33 2.70 1.33 0.00 6.38 0.00 K alternative_donor CG1667,RI_chr2R_5731409_5731653,I_chr2R_5732410_5732504 chr2R + chr2R_5731907_5731965 chr2R_5731914_5731965 chr2R_5731966_5732034;chr2R_5731846_5731906 97.62 96.43 98.36 98.25 100.00 97.87 100.00 98.59 98.91 94.44 94.74 98.65 100.00 100.00 100.00 98.41 100.00 97.50 97.87 97.35 97.37 90.48 95.24 97.62 100.00 97.56 97.50 100.00 91.67 94.44 85.25 100.00 93.33 98.44 95.65 94.74 100.00 86.96 98.00 100.00 100.00 96.30 100.00 97.78 95.65 97.22 93.55 93.33 98.61 92.11 97.92 100.00 94.12 96.00 97.96 97.37 94.44 94.12 K intron_retention CG2698,I_chr3R_3828169_3828941,I_chr3R_3828880_3828941,I_chr3R_3829483_3829715,I_chr3R_3830586_3830981 chr3R + chr3R_3829483_3829697 chr3R_3829482_3829483;chr3R_3829697_3829698 chr3R_3829383_3829482;chr3R_3829698_3829900 57.14 59.09 57.58 57.78 42.86 57.14 54.35 59.09 67.39 50.00 37.04 53.70 57.14 66.67 50.00 65.91 61.11 63.64 51.28 78.43 51.85 70.83 61.76 58.62 67.86 53.12 31.15 48.00 53.49 55.56 70.73 57.14 95.00 71.79 56.00 67.65 40.00 41.38 44.44 61.36 67.86 53.57 62.96 51.22 53.85 50.00 55.00 65.85 59.65 64.29 56.41 68.97 66.67 56.00 45.71 60.00 56.00 67.65 K jcn_only_AD CG5316 chr3R + chr3R_15229212_15229614 chr3R_15229545_15229614 chr3R_15229615_15229840;chr3R_15229203_15229211 100.00 NA 100.00 100.00 NA 95.45 97.50 100.00 100.00 NA 95.83 100.00 NA 100.00 100.00 97.62 95.24 100.00 100.00 98.28 100.00 NA 100.00 100.00 NA 96.97 100.00 NA NA NA 100.00 NA NA 97.22 NA NA 88.00 95.65 96.88 100.00 NA 100.00 NA NA NA NA 96.30 NA 97.78 100.00 100.00 96.67 100.00 NA 96.88 NA 100.00 100.00 K jcn_only_AA Caki chr3R - chr3R_17615483_17617252 chr3R_17616461_17617252 chr3R_17617253_17617321 0.58 1.50 0.00 3.19 0.74 0.00 0.69 1.76 0.60 0.00 0.00 0.44 0.00 0.98 0.58 0.00 1.80 0.00 0.00 0.00 1.53 2.36 0.89 0.61 0.00 0.00 1.04 0.00 0.71 0.99 0.67 0.00 1.47 0.48 0.00 0.88 0.57 0.95 1.08 0.84 1.90 0.00 0.00 0.00 0.00 1.27 0.56 1.64 0.47 0.75 2.43 0.99 0.00 0.00 0.00 0.00 1.10 0.00 K intron_retention CG6812 chr3L + chr3L_19058484_19058549 chr3L_19058483_19058484;chr3L_19058549_19058550 chr3L_19057945_19058483;chr3L_19058550_19058705 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 2.70 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 2.33 NA NA 0.00 0.00 NA NA NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 3.70 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 K jcn_only_AA msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585739_2586402;chr3L_2585733_2586402 chr3L_2585716_2586402 chr3L_2586403_2586502;chr3L_2585639_2585715 0.00 2.04 0.46 0.00 0.00 1.03 0.84 0.57 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.60 0.49 0.51 0.70 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.54 0.00 0.00 0.00 1.03 0.00 1.24 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 1.64 0.00 0.00 0.71 0.00 0.00 0.67 K intron_retention wech,I_chr2R_3373673_3377000,I_chr2R_3373673_3377045,I_chr2R_3373673_3377324,I_chr2R_3376705_3376837 chr2R - chr2R_3377076_3377150 chr2R_3377075_3377076;chr2R_3377150_3377151 chr2R_3377046_3377075;chr2R_3377151_3377248 0.00 0.00 0.00 47.06 NA 0.00 35.29 5.71 7.50 0.00 0.00 6.67 0.00 0.00 0.00 9.09 NA 0.00 12.50 9.09 5.88 NA 0.00 10.00 NA 14.29 25.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 6.38 NA 0.00 NA 0.00 NA 0.00 0.00 3.70 10.81 NA 0.00 NA 0.00 NA NA NA NA 0.00 N alternative_acceptor CG42394,noncoding_15936,E_chr3R_6675742_6676058 chr3R + chr3R_6677211_6677344;chr3R_6677211_6677262 chr3R_6677211_6677270 chr3R_6677007_6677210;chr3R_6677345_6677430 79.31 77.78 80.33 70.25 94.74 78.85 78.86 73.94 75.52 100.00 82.05 81.36 75.34 78.95 75.47 74.51 75.36 78.05 71.88 81.75 96.88 97.62 76.32 82.69 88.00 67.39 78.43 84.62 92.31 95.24 78.67 75.93 83.67 80.74 75.51 87.10 83.33 70.00 96.67 86.21 74.07 79.65 79.31 77.36 82.14 77.32 83.93 72.55 77.64 75.00 83.33 77.14 86.67 86.27 71.88 79.55 82.95 80.00 K intron_retention RhoGAP18B chrX - chrX_19038625_19040000 chrX_19038624_19038625;chrX_19040000_19040001 chrX_19038597_19038624;chrX_19040001_19040175 0.00 0.00 0.00 7.41 0.00 6.67 8.70 5.71 11.11 NA 0.00 7.69 0.00 NA 0.00 9.09 5.26 4.55 0.00 11.11 6.67 0.00 0.00 0.00 0.00 0.00 4.17 NA 0.00 0.00 13.04 NA 5.88 3.57 5.56 0.00 0.00 0.00 0.00 0.00 NA 3.12 0.00 0.00 0.00 0.00 0.00 0.00 5.26 13.33 0.00 NA 0.00 0.00 10.00 4.76 0.00 0.00 K cassette nompB chr2L - chr2L_21579638_21586399 chr2L_21579638_21581616;chr2L_21581817_21586399 chr2L_21581617_21581816 chr2L_21579621_21579637;chr2L_21586400_21586499 88.89 NA NA 100.00 NA NA 87.50 88.89 88.89 NA NA 90.00 100.00 NA NA 77.78 NA NA NA 88.89 NA NA 83.33 NA NA NA NA NA NA NA 66.67 NA NA 87.50 NA NA NA NA NA 100.00 NA 83.33 NA 100.00 NA NA NA NA 87.50 NA 100.00 NA NA NA NA NA 83.33 100.00 K alternative_acceptor CG18081,I_chr3L_15827984_15828396 chr3L - chr3L_15827980_15828293 chr3L_15827984_15828293 chr3L_15828294_15828459;chr3L_15827948_15827979 87.10 89.19 86.79 90.54 80.56 88.89 89.29 86.05 89.16 95.00 81.58 92.47 89.58 90.91 87.04 89.02 90.91 92.11 91.07 91.86 87.18 92.31 85.94 86.96 96.15 86.00 82.93 80.00 75.86 83.33 85.71 88.89 93.75 88.16 87.10 86.67 83.67 85.11 95.12 87.50 85.71 91.57 82.69 82.98 83.87 86.79 81.82 78.95 92.79 85.11 94.44 91.18 80.36 91.30 80.33 86.00 92.11 85.71 K cassette CG13124,RI_chr2L_9906444_9907607,RI_chr2L_9907784_9908405,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9906444_9907607 chr2L_9906444_9907050;chr2L_9907548_9907607 chr2L_9907051_9907547 chr2L_9906344_9906443;chr2L_9907608_9907707 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.01 100.00 100.00 100.00 99.02 100.00 100.00 100.00 98.95 100.00 100.00 100.00 100.00 100.00 100.00 98.94 100.00 100.00 100.00 100.00 100.00 95.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 N intron_retention CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525704_1526333 chr3L_1525703_1525704;chr3L_1526333_1526334 chr3L_1525642_1525703;chr3L_1526334_1526398 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 100.00 68.42 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 100.00 100.00 100.00 K intron_retention CG8632,CG8646 chr2R + chr2R_8541564_8541630 chr2R_8541563_8541564;chr2R_8541630_8541631 chr2R_8541495_8541563;chr2R_8541631_8541699 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 4.17 NA NA NA 0.00 0.00 0.00 0.00 1.39 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 4.65 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 5.06 0.00 0.00 NA 0.00 0.00 3.23 3.45 1.68 0.00 NA 0.00 0.00 0.00 5.00 0.00 0.00 0.00 1.75 K intron_retention didum,I_chr2R_3393005_3393348 chr2R + chr2R_3393252_3393343 chr2R_3393251_3393252;chr2R_3393343_3393344 chr2R_3393154_3393251;chr2R_3393344_3393524 1.75 0.00 1.85 6.94 0.00 4.76 7.27 6.35 4.08 0.00 3.03 2.44 0.00 4.65 5.66 0.00 0.00 2.04 0.00 6.19 0.00 0.00 0.00 3.51 6.25 10.00 7.69 NA 2.94 0.00 2.08 0.00 0.00 4.17 0.00 0.00 1.82 0.00 4.62 2.38 NA 2.73 0.00 0.00 0.00 0.00 0.00 5.88 4.76 0.00 1.75 0.00 0.00 3.12 0.00 0.00 3.45 0.00 K intron_retention CG10462 chr2L - chr2L_19733070_19733162 chr2L_19733069_19733070;chr2L_19733162_19733163 chr2L_19733001_19733069;chr2L_19733163_19733336 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.73 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 K intron_retention CG9646 chr2R + chr2R_12937681_12937737 chr2R_12937680_12937681;chr2R_12937737_12937738 chr2R_12937514_12937680;chr2R_12937738_12938160 0.00 0.00 2.17 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention CG11141,p47,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3348706_3348760 chr2R_3348705_3348706;chr2R_3348760_3348761 chr2R_3347728_3348705;chr2R_3348761_3349848 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention eIF-4a,I_chr2L_5981836_5984010,I_chr2L_5983941_5984010,I_chr2L_5983591_5984010,I_chr2L_5985221_5985289 chr2L + chr2L_5983941_5984010 chr2L_5983940_5983941;chr2L_5984010_5984011 chr2L_5983841_5983940;chr2L_5984011_5984110 36.37 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.09 NA NA NA NA NA 63.64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Hsp83 chr3L + chr3L_3193368_3194498 chr3L_3193367_3193368;chr3L_3194498_3194499 chr3L_3192969_3193367;chr3L_3194499_3197061 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.11 0.00 0.18 0.11 0.00 0.00 0.00 0.00 0.53 0.00 0.13 0.77 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.12 0.00 0.00 0.00 K intron_retention cul-2,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21661466_21661529 chr2L_21661465_21661466;chr2L_21661529_21661530 chr2L_21661348_21661465;chr2L_21661530_21661636 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 3.23 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1962 chr2L - chr2L_20681534_20681618 chr2L_20681533_20681534;chr2L_20681618_20681619 chr2L_20679105_20681533;chr2L_20681619_20681995 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 10.00 NA NA NA 5.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 K intron_retention dgt1,CG7824 chr3R - chr3R_25682556_25682608 chr3R_25682555_25682556;chr3R_25682608_25682609 chr3R_25682489_25682555;chr3R_25682609_25682675 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Hml chr3L + chr3L_13840287_13840350 chr3L_13840287_13840347 chr3L_13840122_13840286;chr3L_13840351_13840740 72.73 72.73 NA 80.95 NA 72.73 87.50 64.29 76.47 NA 90.91 73.08 70.59 50.00 83.33 64.29 87.50 66.67 75.00 78.95 66.67 NA 61.11 NA NA 85.71 91.67 NA NA NA NA NA NA 75.00 NA NA 70.00 NA NA 69.57 NA 70.00 71.43 61.54 NA NA NA 78.57 75.00 NA NA NA NA NA 61.54 NA NA 60.00 K intron_retention l(3)L1231 chr3R - chr3R_10470911_10471017 chr3R_10470910_10470911;chr3R_10471017_10471018 chr3R_10468524_10470910;chr3R_10471018_10471119 38.71 37.74 40.00 52.46 38.00 43.75 48.89 40.91 45.54 44.44 44.44 30.49 38.89 35.71 36.17 52.17 31.91 39.02 42.86 41.38 34.15 78.72 42.17 31.71 50.85 55.56 48.86 58.23 39.68 36.84 45.95 41.67 37.50 35.14 38.71 26.56 43.36 29.51 32.32 33.96 69.57 41.76 37.14 30.65 46.43 29.55 27.66 34.69 27.91 42.11 45.33 30.00 33.33 35.29 35.85 35.48 34.15 29.63 K jcn_only_AA Eno,I_chr2L_1726650_1727645,I_chr2L_1726656_1727485,EI_chr2L_1727403_1727645,I_chr2L_1728229_1728302 chr2L - chr2L_1726656_1727645;chr2L_1726650_1727645;chr2L_1727559_1727645 chr2L_1727403_1727645 chr2L_1727646_1727735;chr2L_1726556_1726649 0.11 0.00 0.00 0.00 0.00 0.20 0.39 0.00 0.28 0.23 1.84 0.10 0.00 0.00 0.00 0.35 0.24 0.97 0.57 0.09 0.95 0.00 0.00 0.16 0.00 0.57 0.16 0.20 0.27 0.20 0.23 0.00 0.25 0.27 0.00 0.00 0.10 0.26 0.07 0.00 0.48 0.00 0.25 0.28 0.22 0.00 0.00 0.00 0.25 0.61 0.11 0.00 0.00 0.00 0.18 0.00 0.25 0.00 K jcn_only_AA I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10062078_10063898,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10062078_10063910 chr2R_10062078_10063898 chr2R_10061978_10062077;chr2R_10063911_10063998 0.42 2.11 0.00 0.00 0.00 0.00 0.00 1.20 1.28 1.18 0.00 0.53 0.00 1.09 0.00 1.22 1.41 1.15 0.00 0.37 2.82 0.00 0.38 0.00 0.93 2.38 0.60 0.00 0.96 0.00 0.00 1.15 0.00 0.00 0.00 0.68 0.80 0.00 0.96 0.77 1.96 0.82 0.00 0.00 3.77 0.00 0.93 0.88 0.42 0.00 1.31 1.60 0.96 0.00 0.00 0.00 0.99 0.00 K intron_retention sec24,RI_chr2R_5764938_5764997,I_chr2R_5768722_5769689 chr2R - chr2R_5765096_5765148 chr2R_5765095_5765096;chr2R_5765148_5765149 chr2R_5764998_5765095;chr2R_5765149_5765381 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 N cassette Dscam,F_chr2R_3219886_3228832,F_chr2R_3226043_3235353,F_chr2R_3227948_3235353,F_chr2R_3228738_3235353,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3219886_3235353 chr2R_3219886_3230087;chr2R_3230387_3235353 chr2R_3230088_3230386 chr2R_3219786_3219885;chr2R_3235354_3235453 100.00 36.36 36.36 16.00 100.00 NA 42.86 31.58 100.00 100.00 NA 100.00 23.08 100.00 100.00 100.00 NA NA 100.00 100.00 NA 16.67 100.00 100.00 NA NA 100.00 100.00 18.18 100.00 100.00 NA 20.00 100.00 100.00 100.00 100.00 NA 100.00 33.33 NA 100.00 NA 100.00 NA NA NA 100.00 55.56 NA 25.00 NA NA NA 38.46 NA NA NA K intron_retention hairy chr3L + chr3L_8670568_8670704 chr3L_8670567_8670568;chr3L_8670704_8670705 chr3L_8670472_8670567;chr3L_8670705_8672361 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive CG32549,RI_chrX_18301919_18303082,I_chrX_18302976_18303916,I_chrX_18303243_18303916 chrX - chrX_18301919_18303082,chrX_18303236_18303916 chrX_18301919_18302550,chrX_18302893_18303916 chrX_18303083_18303235 chrX_18302551_18302892 chrX_18301857_18301918;chrX_18303917_18304016 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA 100.00 K intron_retention c(3)G chr3R - chr3R_11617601_11617655 chr3R_11617600_11617601;chr3R_11617655_11617656 chr3R_11617378_11617600;chr3R_11617656_11618194 0.00 NA NA 7.69 NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 6.90 NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 7.14 NA NA NA NA NA NA NA NA NA NA K intron_retention CG4789,ppk28 chrX + chrX_16695039_16695101 chrX_16695038_16695039;chrX_16695101_16695102 chrX_16694703_16695038;chrX_16695102_16695620 15.60 22.58 12.07 15.91 11.11 10.00 13.21 17.24 10.31 21.74 10.81 13.79 20.00 12.12 7.81 19.35 19.35 7.14 10.81 16.47 13.33 47.06 35.71 29.17 37.04 27.03 47.62 44.00 34.78 3.77 12.07 15.94 4.55 13.24 11.76 18.52 35.90 34.38 26.00 13.43 9.26 15.60 9.30 17.86 5.48 11.86 24.00 3.70 9.18 27.03 34.62 43.75 9.23 32.00 10.42 14.29 19.51 3.55 K intron_retention CG32428 chr3L - chr3L_20466289_20466409 chr3L_20466288_20466289;chr3L_20466409_20466410 chr3L_20465741_20466288;chr3L_20466410_20466416 95.12 100.00 93.75 97.06 100.00 95.65 96.30 100.00 94.44 100.00 100.00 96.67 92.31 86.36 100.00 96.55 100.00 94.74 96.15 93.10 91.67 91.67 94.12 90.91 100.00 85.00 90.91 91.67 100.00 91.67 95.24 100.00 96.30 93.75 94.44 100.00 88.89 NA 92.86 95.24 100.00 97.73 95.00 100.00 88.24 91.67 100.00 85.71 94.29 NA 100.00 92.31 100.00 NA 95.65 94.12 93.33 94.29 K alternative_acceptor I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10066547_10066616 chr2R_10066547_10066613 chr2R_10066399_10066546;chr2R_10066617_10066759 42.25 46.73 37.39 41.43 39.08 41.58 37.93 43.26 40.89 36.67 43.02 41.41 50.00 40.00 39.32 45.79 41.89 37.96 40.45 42.75 37.23 44.19 40.11 43.55 44.44 38.82 50.71 46.51 42.28 44.32 38.55 40.83 44.44 39.78 46.05 43.65 43.26 44.44 41.38 42.58 39.39 42.79 43.21 44.17 45.79 44.52 38.32 41.30 42.93 46.49 43.14 42.25 40.62 40.37 36.28 37.27 47.06 41.55 K intron_retention Moca-cyp chr3R + chr3R_24168142_24168200 chr3R_24168141_24168142;chr3R_24168200_24168201 chr3R_24168002_24168141;chr3R_24168201_24168348 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.92 0.00 1.45 0.00 0.00 0.00 3.45 1.67 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Crag,I_chrX_8487355_8487512,I_chrX_8494280_8494352 chrX + chrX_8486625_8487512 chrX_8487355_8487512 chrX_8487513_8487612;chrX_8486279_8486624 2.70 2.70 2.56 5.56 0.00 2.22 6.45 4.76 4.23 0.00 4.00 15.69 9.52 2.94 3.85 10.00 4.35 0.00 7.41 4.17 2.94 6.94 3.57 1.72 1.85 3.23 5.00 7.69 4.55 2.70 2.27 0.00 3.45 4.08 2.13 2.70 1.82 2.70 1.41 1.82 0.00 3.49 3.70 6.67 2.70 2.78 0.00 2.22 1.59 0.00 2.22 0.00 0.00 0.00 2.27 0.00 5.56 0.00 K alternative_acceptor kal-1 chr3R + chr3R_19972025_19972096 chr3R_19972025_19972087 chr3R_19971831_19972024;chr3R_19972097_19972461 98.97 98.53 100.00 97.83 94.44 100.00 98.04 98.53 99.10 100.00 97.44 97.62 100.00 100.00 98.41 98.59 97.67 100.00 100.00 100.00 100.00 100.00 98.86 98.68 96.77 100.00 100.00 97.50 98.48 98.33 98.51 100.00 98.67 97.83 100.00 98.41 100.00 100.00 98.97 100.00 98.65 100.00 100.00 98.33 100.00 99.12 98.63 95.35 98.20 98.18 99.01 100.00 100.00 100.00 98.53 100.00 100.00 98.09 K intron_retention I_chr2R_19265701_19270570,CG3530,CG3520 chr2R - chr2R_19278850_19278912 chr2R_19278849_19278850;chr2R_19278912_19278913 chr2R_19278715_19278849;chr2R_19278913_19279196 0.00 0.00 0.00 7.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 2.22 3.70 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 1.27 3.45 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 K intron_retention tral,I_chr3L_12512171_12512251 chr3L + chr3L_12512171_12512243 chr3L_12512170_12512171;chr3L_12512243_12512244 chr3L_12512071_12512170;chr3L_12512244_12512343 0.00 0.00 0.00 3.70 0.00 1.89 0.00 0.00 1.20 0.00 0.00 0.00 0.00 1.82 0.00 3.77 0.00 0.00 0.00 0.65 0.00 0.68 0.00 0.00 0.00 0.00 0.52 2.17 4.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.50 0.00 1.50 0.00 0.65 0.00 0.49 0.00 0.00 0.00 1.45 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 1.60 0.00 K jcn_only_AA Ndae1,I_chr2L_7231127_7234203,I_chr2L_7231184_7234525,I_chr2L_7231981_7234526,CREI_chr2L_7232646_7232704,I_chr2L_7234342_7234526 chr2L - chr2L_7231127_7234526 chr2L_7231184_7234526 chr2L_7234527_7234625;chr2L_7231095_7231126 100.00 100.00 100.00 100.00 97.30 100.00 94.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 98.18 96.00 96.15 95.45 97.30 97.89 100.00 97.83 100.00 96.43 NA 100.00 98.98 NA 100.00 100.00 NA NA 100.00 NA 97.50 100.00 K alternative_acceptor Cap-H2 chr3R + chr3R_6589674_6589832;chr3R_6589674_6589871 chr3R_6589674_6589835 chr3R_6588751_6589673;chr3R_6589872_6590095 57.14 50.00 57.14 45.45 NA 71.43 66.67 57.14 66.67 NA NA 50.00 85.71 75.00 71.43 57.14 55.56 NA 42.86 73.33 57.14 NA 50.00 100.00 NA 85.71 60.00 42.86 NA NA 62.50 NA NA 76.92 NA NA NA NA 62.50 57.14 NA 47.06 NA NA NA NA NA NA 55.56 NA 66.67 NA NA NA 57.14 NA NA NA K intron_retention cul-4 chr2R - chr2R_3991418_3991471 chr2R_3991417_3991418;chr2R_3991471_3991472 chr2R_3991028_3991417;chr2R_3991472_3991608 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K alternative_acceptor CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15766003_15766062;chrX_15766003_15766047 chrX_15766003_15766068 chrX_15765903_15766002;chrX_15766069_15766147 5.56 0.00 0.00 6.67 12.50 NA 4.55 12.50 0.00 NA 11.11 5.26 7.14 11.11 8.33 5.26 12.50 NA 14.29 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA 7.69 NA NA 14.29 NA NA NA NA NA 0.00 NA 3.85 8.33 0.00 NA NA NA NA 9.09 NA 0.00 NA NA NA 5.56 NA NA NA K alternative_donor trbd chr3R - chr3R_5535271_5536202;chr3R_5535271_5535611 chr3R_5535271_5536695 chr3R_5535110_5535270;chr3R_5536696_5536730 2.63 4.35 11.11 2.63 0.00 8.33 3.03 10.26 5.17 0.00 0.00 4.76 10.00 0.00 0.00 2.94 5.56 15.38 3.85 2.04 0.00 11.11 0.00 0.00 0.00 4.55 0.00 9.09 11.11 0.00 0.00 6.67 5.26 2.70 0.00 0.00 0.00 5.00 0.00 2.86 4.35 4.44 5.56 0.00 0.00 8.33 5.26 3.12 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341925_20342041;chr3L_20341509_20342041;chr3L_20341865_20342041;chr3L_20341486_20342041;chr3L_20341522_20342041;chr3L_20341751_20342041;chr3L_20341530_20342041;chr3L_20341629_20342041;chr3L_20341598_20342041;chr3L_20341759_20342041 chr3L_20341636_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL27A,E_chr2L_4457411_4457977,I_chr2L_4457510_4457892,snoRNA:Me18S-C1831,I_chr2L_4458058_4458120 chr2L - chr2L_4457510_4457739 chr2L_4457509_4457510;chr2L_4457739_4457740 chr2L_4457412_4457509;chr2L_4457740_4457786 0.10 0.07 0.05 0.12 0.05 0.12 0.10 0.08 0.06 0.18 0.02 0.10 0.09 0.14 0.07 0.13 0.08 0.07 0.06 0.10 0.04 0.30 0.11 0.07 0.08 0.10 0.22 0.44 0.17 0.13 0.10 0.09 0.10 0.07 0.18 0.15 0.11 0.09 0.09 0.11 0.09 0.09 0.08 0.08 0.07 0.10 0.03 0.14 0.13 0.15 0.12 0.10 0.07 0.10 0.07 0.09 0.13 0.10 K alternative_donor CG1354,I_chrX_9672972_9673084 chrX + chrX_9672833_9672900 chrX_9672843_9672900 chrX_9672901_9672946;chrX_9672779_9672832 63.64 57.14 75.86 59.57 70.59 71.43 67.57 67.65 58.73 NA 56.52 68.89 67.86 62.50 63.64 61.11 66.67 65.00 62.50 64.71 63.64 NA 69.23 73.33 90.00 70.83 62.50 75.00 75.00 NA 63.33 NA NA 61.11 NA NA 73.53 45.45 60.00 57.14 NA 59.62 61.90 75.00 76.47 NA 77.78 NA 66.67 69.23 57.14 63.16 60.00 NA 58.33 60.00 61.11 NA K intron_retention CG1622,REI_chrX_13191277_13191339,I_chrX_13191916_13192167,I_chrX_13192409_13192738,EI_chrX_13192857_13192928 chrX + chrX_13191916_13192738 chrX_13191915_13191916;chrX_13192738_13192739 chrX_13191816_13191915;chrX_13192739_13192838 6.21 6.60 6.09 3.82 3.31 4.44 10.24 4.44 5.32 5.21 5.08 8.10 3.53 9.64 7.96 3.25 5.38 9.62 5.10 5.26 5.22 31.65 6.76 6.82 8.44 4.72 7.18 6.21 16.89 5.05 12.65 7.58 4.12 3.12 8.73 14.09 6.36 5.38 6.13 7.56 8.38 4.95 5.06 9.63 6.99 9.83 7.41 9.93 5.47 7.87 9.22 8.33 4.66 5.21 4.69 6.52 3.18 5.75 K intron_retention Gel,I_chr3R_63540_64006,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_63540_64024 chr3R_63539_63540;chr3R_64024_64025 chr3R_63440_63539;chr3R_64025_64099 0.46 0.22 0.00 0.69 0.00 0.29 1.29 0.42 0.75 0.00 0.00 0.26 0.60 0.51 0.19 0.62 0.00 0.71 0.45 0.23 0.52 3.10 0.46 0.72 1.55 1.81 0.98 1.89 1.85 0.46 0.00 0.00 0.55 0.15 0.00 2.39 0.65 0.72 0.30 1.17 1.98 0.52 0.90 0.44 0.00 0.00 0.47 1.35 0.60 0.00 0.00 2.15 0.00 0.00 0.18 0.38 0.00 0.52 K intron_retention CG1416,I_chr2L_21758100_21758179,I_chr2L_21758143_21758183,I_chr2L_21758143_21758209 chr2L + chr2L_21758100_21758179 chr2L_21758099_21758100;chr2L_21758179_21758180 chr2L_21758043_21758099;chr2L_21758180_21758279 99.22 99.09 99.16 99.34 98.78 98.96 98.92 99.54 99.28 100.00 98.99 99.57 100.00 100.00 99.27 99.61 98.92 99.07 100.00 99.67 100.00 100.00 99.28 99.16 100.00 98.52 99.28 100.00 100.00 99.03 99.27 98.95 99.15 99.45 99.12 100.00 96.46 98.65 98.31 98.67 100.00 99.57 100.00 99.08 99.19 99.36 97.64 99.22 99.60 99.21 99.15 98.97 97.44 99.13 98.50 99.20 99.47 100.00 K intron_retention CG31211 chr3R + chr3R_7776734_7776971 chr3R_7776733_7776734;chr3R_7776971_7776972 chr3R_7776580_7776733;chr3R_7776972_7777214 34.62 38.00 36.17 45.00 27.27 40.00 47.37 31.43 39.25 34.78 22.45 40.00 38.30 43.59 41.86 54.39 34.29 37.21 44.83 34.58 25.00 23.64 32.61 39.13 37.78 41.18 29.31 34.62 8.33 32.81 47.92 29.03 38.60 47.30 32.65 42.86 23.46 27.78 27.17 28.99 40.54 41.25 55.56 30.36 17.95 31.58 23.53 42.86 46.15 17.46 32.56 33.96 22.45 24.07 39.58 28.00 32.81 56.52 K intron_retention shep,I_chr3L_5157070_5160067,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5157076_5160034 chr3L_5157075_5157076;chr3L_5160034_5160035 chr3L_5156934_5157075;chr3L_5160035_5160051 5.56 3.08 4.82 3.91 5.26 8.22 18.85 6.62 6.76 1.82 11.24 4.07 8.54 0.00 6.90 8.57 5.26 0.00 10.64 8.59 11.11 9.33 6.82 3.95 3.70 8.99 3.26 11.86 3.70 5.56 7.69 10.81 8.22 8.26 5.26 1.92 4.60 3.64 6.56 6.31 8.82 7.09 5.08 1.69 2.78 7.32 0.00 55.56 6.75 9.30 4.76 2.13 0.00 0.00 3.74 0.00 6.12 5.56 K jcn_only_AD CG12428,I_chr3R_23531574_23532266 chr3R - chr3R_23531574_23532276;chr3R_23531574_23531981 chr3R_23531574_23531786 chr3R_23531474_23531573;chr3R_23532277_23532366 0.00 NA NA 0.00 NA NA 0.00 4.55 0.00 NA NA NA NA NA NA NA NA NA NA 2.63 NA 0.00 0.00 NA NA NA NA NA NA 5.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention CG8121,RI_chr3R_5183458_5183705 chr3R + chr3R_5161752_5161879 chr3R_5161751_5161752;chr3R_5161879_5161880 chr3R_5161622_5161751;chr3R_5161880_5161974 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 1.30 NA 0.00 3.77 0.00 0.00 5.13 1.75 0.00 0.00 2.38 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Cirl,R_chr2R_4502755_4503407 chr2R + chr2R_4510322_4510375 chr2R_4510321_4510322;chr2R_4510375_4510376 chr2R_4508698_4510321;chr2R_4510376_4510482 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 K intron_retention CG3632,RI_chrX_16195880_16196242 chrX + chrX_16196446_16196939 chrX_16196445_16196446;chrX_16196939_16196940 chrX_16196243_16196445;chrX_16196940_16197282 6.90 0.00 8.70 9.09 11.76 14.29 14.29 5.71 7.69 NA 12.50 11.11 12.50 10.71 0.00 17.14 0.00 9.52 6.90 6.06 6.67 13.33 8.70 0.00 NA 9.38 6.90 0.00 13.64 0.00 8.33 14.29 13.33 7.50 4.76 NA 0.00 NA 0.00 5.26 6.67 5.56 0.00 4.35 0.00 7.14 16.67 22.22 4.88 6.25 5.71 0.00 9.09 0.00 3.23 6.90 0.00 10.71 K intron_retention smi35A,E_chr2L_14222082_14233578,E_chr2L_14222082_14233893,RI_chr2L_14233579_14233647 chr2L - chr2L_14233579_14233647 chr2L_14233578_14233579;chr2L_14233647_14233648 chr2L_14233479_14233578;chr2L_14233648_14233678 81.25 NA NA NA NA NA 53.33 80.00 72.22 NA NA NA 87.50 80.00 NA 81.82 NA NA 87.50 91.67 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 78.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 81.25 NA NA NA NA NA NA NA NA NA K alternative_donor CG32000,RI_chr4_153025_153811,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_153025_153811;chr4_152998_153811 chr4_152914_153811 chr4_153812_153855;chr4_152891_152913 82.16 NA 87.50 61.11 NA 75.00 86.05 82.50 88.64 NA NA 78.95 57.14 81.82 NA 73.47 NA NA 81.82 83.78 NA NA NA NA NA NA NA NA 72.73 81.82 NA 91.67 92.59 80.95 NA NA NA NA NA 80.00 NA 86.96 85.71 NA 75.00 NA NA 85.71 87.50 NA NA NA NA NA NA NA NA 86.36 K jcn_only_AD CG1578,RI_chrX_11709573_11709680,I_chrX_11709573_11710263,RI_chrX_11709573_11710335,noncoding_23225,I_chrX_11710380_11710454 chrX - chrX_11709573_11709680;chrX_11709573_11710335;chrX_11709573_11710454;chrX_11709573_11710263 chrX_11709573_11710458 chrX_11709473_11709572;chrX_11710459_11710479 7.50 NA NA NA NA NA NA NA 7.50 NA NA 3.57 NA NA NA NA NA NA NA 4.76 NA NA 3.45 13.79 NA NA NA NA NA NA 14.29 NA NA NA NA NA 8.57 NA 0.00 6.67 NA 14.81 NA 3.70 NA NA NA 4.17 13.33 NA NA NA NA NA 12.90 NA 10.00 NA K jcn_only_AA CG10959,I_chrX_8043524_8043577,I_chrX_8043625_8043682 chrX + chrX_8043510_8043583 chrX_8043510_8043577 chrX_8043424_8043509;chrX_8043584_8043624 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.67 NA NA NA NA NA NA 90.91 NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA 94.87 K intron_retention CG6006 chr3R + chr3R_11994430_11995416 chr3R_11994429_11994430;chr3R_11995416_11995417 chr3R_11994138_11994429;chr3R_11995417_11995743 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 NA K alternative_donor ari-1,I_chrX_18026911_18026975 chrX - chrX_18026911_18026992 chrX_18026911_18026975 chrX_18026811_18026910;chrX_18026993_18027075 0.00 2.70 0.00 0.00 2.22 3.23 2.90 0.00 2.80 0.00 3.23 4.48 4.00 2.44 2.50 0.00 0.00 0.00 0.00 0.99 3.70 0.00 0.00 0.00 0.00 2.56 0.00 4.55 7.41 0.00 2.04 NA 0.00 1.89 0.00 0.00 0.00 3.57 0.00 3.57 0.00 0.00 0.00 0.00 0.00 3.57 0.00 2.50 1.47 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA mRpS10,CG34316 chr3R + chr3R_11055463_11055522 chr3R_11055463_11055508 chr3R_11055424_11055462;chr3R_11055523_11055749 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 3.45 0.00 2.33 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 3.23 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 NA 0.00 0.00 0.00 0.00 K alternative_donor Itp-r83A,RI_chr3R_1358495_1358578 chr3R + chr3R_1358029_1358578 chr3R_1358495_1358578 chr3R_1358579_1358678;chr3R_1357382_1358028 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 NA 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 7.14 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 NA 0.00 0.00 2.56 NA 0.00 0.00 5.56 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 NA K intron_retention CG3792,CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4977686_4977747 chr2L_4977685_4977686;chr2L_4977747_4977748 chr2L_4977202_4977685;chr2L_4977748_4978568 1.47 1.54 2.30 1.23 0.00 0.00 1.63 0.67 2.30 0.00 1.82 3.36 0.00 0.00 1.23 6.80 0.00 0.00 4.82 4.64 2.99 2.27 1.64 2.63 0.00 0.00 5.26 2.78 0.00 6.45 2.22 12.00 3.33 2.40 0.00 0.00 1.47 3.57 0.00 5.26 0.00 4.48 0.00 0.00 6.67 1.59 0.00 0.00 3.54 5.56 1.37 0.00 0.00 0.00 0.00 0.00 0.00 2.94 K intron_retention CG8334,I_chr3L_19870731_19870822 chr3L + chr3L_19870674_19871932 chr3L_19870673_19870674;chr3L_19871932_19871933 chr3L_19870631_19870673;chr3L_19871933_19872579 45.45 59.09 40.00 48.15 61.11 52.63 55.00 52.94 53.33 38.46 42.86 41.67 66.67 54.55 42.42 52.78 68.42 43.33 55.56 34.92 27.78 35.71 39.29 45.45 40.91 53.85 58.82 69.23 29.03 36.67 30.56 50.00 48.57 45.45 53.33 45.16 51.72 42.86 61.29 45.10 40.00 45.76 36.84 22.73 58.82 45.45 NA 32.65 47.17 NA 45.45 40.00 23.81 NA 56.52 50.00 36.84 20.93 K intron_retention Cyp4e2,Cyp4e1 chr2R + chr2R_4333389_4333446 chr2R_4333388_4333389;chr2R_4333446_4333447 chr2R_4333039_4333388;chr2R_4333447_4333816 1.61 0.00 1.08 4.44 7.55 2.56 1.71 2.94 2.45 0.00 0.00 0.78 3.17 3.39 2.25 0.98 0.00 0.00 2.41 2.94 0.00 1.59 0.86 1.18 1.67 3.28 4.11 4.26 2.48 0.00 3.77 0.00 1.94 1.72 1.23 0.00 2.13 0.00 1.09 2.45 0.83 4.48 1.61 0.00 1.57 1.01 4.29 0.46 3.10 4.30 0.99 0.00 0.00 2.67 4.76 0.94 3.17 0.00 K intron_retention zip,I_chr2R_20878796_20879147 chr2R - chr2R_20898140_20898834 chr2R_20898139_20898140;chr2R_20898834_20898835 chr2R_20897903_20898139;chr2R_20898835_20898892 4.26 2.04 3.85 5.00 5.00 5.17 3.08 6.93 2.88 0.00 6.90 4.08 6.06 3.77 5.56 5.45 7.32 8.57 4.17 3.23 5.56 6.25 2.15 3.17 5.88 5.36 6.94 4.26 2.82 4.94 6.56 4.55 6.15 4.39 1.61 6.25 4.62 6.12 0.00 2.54 3.77 5.05 8.16 5.00 10.53 1.47 0.00 2.23 2.44 0.00 4.17 0.00 2.94 2.56 4.11 2.78 6.25 4.00 K alternative_acceptor CG4133 chr2L + chr2L_457563_457627 chr2L_457563_457614 chr2L_457400_457562;chr2L_457628_458727 7.14 5.88 7.27 9.52 4.44 6.12 4.29 7.04 7.21 5.77 12.20 5.26 5.71 5.26 7.04 10.81 5.88 9.23 7.32 7.80 5.56 9.92 11.61 8.14 5.08 7.14 9.89 13.11 9.86 5.88 11.76 7.14 10.58 8.82 8.77 4.30 9.26 8.96 11.83 6.10 5.15 8.08 4.65 8.54 8.26 7.14 10.13 6.43 8.26 5.50 7.00 5.88 8.82 5.32 5.88 5.75 6.19 7.10 K alternative_acceptor cul-2,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21661637_21662083 chr2L_21661637_21661945 chr2L_21661537_21661636;chr2L_21662084_21662183 0.00 0.00 0.00 1.19 0.00 0.00 1.69 0.88 0.79 0.00 0.00 1.16 4.65 2.13 0.00 2.11 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 3.37 2.67 0.00 0.00 0.00 0.00 0.00 0.00 2.94 1.69 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 1.54 2.70 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention F_chr2L_15260838_15261717,cul-3 chr2L - chr2L_15266735_15266795 chr2L_15266734_15266735;chr2L_15266795_15266796 chr2L_15266596_15266734;chr2L_15266796_15267019 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 N cassette unc-13,I_chr4_904268_919018,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_906518_919018 chr4_906518_907590;chr4_913467_919018 chr4_907591_913466 chr4_906418_906517;chr4_919019_919102 15.15 11.11 22.22 32.79 16.67 16.67 29.20 22.73 17.05 13.64 25.00 19.72 13.64 20.00 15.79 19.61 15.62 9.09 16.28 14.93 15.38 13.59 9.46 10.00 12.07 15.22 15.28 23.40 10.87 15.15 10.61 13.33 16.67 16.92 15.00 15.94 8.82 9.09 6.67 19.05 16.67 16.92 26.09 9.72 7.69 8.11 6.45 20.00 15.49 7.41 11.32 10.34 7.69 4.76 17.65 3.45 2.78 12.50 K intron_retention Syx16,RI_chrX_20264319_20264376 chrX - chrX_20264319_20264380 chrX_20264318_20264319;chrX_20264380_20264381 chrX_20264219_20264318;chrX_20264381_20264476 2.22 0.00 0.00 0.00 0.00 0.00 3.57 1.52 3.06 0.00 0.00 1.06 0.00 0.00 6.90 26.83 0.00 2.00 0.00 3.12 0.00 7.04 7.04 2.44 0.00 0.00 9.84 7.27 2.22 3.28 0.00 5.88 9.18 0.00 3.51 8.77 2.48 0.00 4.12 6.36 4.88 0.00 0.00 1.47 3.28 5.21 1.72 2.30 3.03 8.75 0.00 0.00 0.00 4.17 0.00 2.70 3.03 4.12 K intron_retention CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8182451_8183188 chr2L_8182450_8182451;chr2L_8183188_8183189 chr2L_8182351_8182450;chr2L_8183189_8183563 10.53 11.25 10.71 9.69 9.29 7.50 34.15 7.02 11.01 8.00 19.82 5.88 17.29 12.50 9.14 7.63 11.30 9.29 13.22 11.07 13.18 27.93 11.29 9.35 30.34 53.93 15.49 6.32 6.82 7.55 8.19 10.53 7.87 14.23 11.03 21.35 7.80 11.11 9.39 7.11 18.84 12.73 9.70 7.53 5.88 8.48 13.00 4.85 10.86 11.57 10.92 14.02 7.69 9.38 9.74 12.38 9.92 4.05 K intron_retention CG8709,I_chr2R_4027128_4027182,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4029326_4029395 chr2R_4029325_4029326;chr2R_4029395_4029396 chr2R_4028186_4029325;chr2R_4029396_4029533 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 3.45 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL10Ab chr3L + chr3L_11816530_11816757 chr3L_11816529_11816530;chr3L_11816757_11816758 chr3L_11816461_11816529;chr3L_11816758_11817314 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.55 100.00 100.00 K intron_retention Adf1,CG15908_CG9410 chr2R + chr2R_2550263_2554224 chr2R_2550262_2550263;chr2R_2554224_2554225 chr2R_2550130_2550262;chr2R_2554225_2554518 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Bj1 chr3L - chr3L_5925418_5925505 chr3L_5925417_5925418;chr3L_5925505_5925506 chr3L_5924718_5925417;chr3L_5925506_5925564 1.96 2.86 1.47 3.92 0.00 3.03 2.17 3.54 1.16 3.03 0.00 2.90 0.00 2.78 2.25 0.00 0.00 2.17 2.44 2.30 0.00 0.00 2.30 1.96 1.72 2.33 5.26 16.67 12.20 2.17 0.00 3.33 1.35 1.80 0.00 0.00 1.52 3.57 0.00 3.62 0.00 2.04 0.00 0.00 0.00 5.80 0.00 3.90 1.28 4.62 2.33 0.00 0.00 0.00 2.06 0.00 0.00 3.51 K intron_retention trio,I_chr3L_999683_1009321 chr3L - chr3L_999543_999616 chr3L_999542_999543;chr3L_999616_999617 chr3L_999447_999542;chr3L_999617_999682 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.88 0.47 0.32 0.00 1.15 1.22 1.97 1.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor cnn,I_chr2R_9333096_9336723,I_chr2R_9333096_9336812,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9334834_9336723;chr2R_9334834_9336812;chr2R_9334834_9336719 chr2R_9334834_9336501 chr2R_9334744_9334833;chr2R_9336813_9336819 66.67 76.92 80.00 67.86 77.78 72.73 70.73 67.74 77.08 63.16 53.33 60.53 57.14 76.47 61.54 78.79 50.00 85.71 77.78 53.33 58.33 56.76 73.53 61.11 68.42 70.00 67.65 74.29 71.79 69.70 60.87 72.73 68.42 65.62 61.54 48.15 70.37 54.55 69.23 60.87 66.67 60.00 61.54 70.45 63.64 53.85 50.00 80.00 75.00 55.56 91.30 64.71 75.00 66.67 47.37 66.67 50.00 63.16 K alternative_donor Baldspot,I_chr3L_16644636_16654570,I_chr3L_16652567_16652897,I_chr3L_16652567_16654296,RI_chr3L_16652567_16654506,RI_chr3L_16652567_16654512 chr3L - chr3L_16652567_16654570 chr3L_16652567_16654510 chr3L_16652467_16652566;chr3L_16654571_16654606 4.00 4.31 3.46 5.39 3.21 3.70 5.02 8.23 3.90 5.66 2.74 3.85 5.97 3.62 3.33 2.45 5.67 2.48 5.13 4.98 2.31 1.15 3.70 3.68 4.44 6.03 5.81 2.24 5.41 3.96 3.87 5.75 3.34 4.74 3.30 6.51 5.16 3.38 4.17 2.77 4.00 4.37 5.66 4.83 4.30 3.97 2.24 6.13 4.45 1.87 4.03 5.05 3.85 5.04 4.40 3.97 1.83 3.56 K jcn_only_AA CG17508,RI_chr2R_1496995_1497120,chr2R_1497138_1497448.0 chr2R + chr2R_1496995_1497120;chr2R_1496995_1497637 chr2R_1496995_1497568 chr2R_1496895_1496994;chr2R_1497638_1497761 98.39 96.55 100.00 98.99 94.92 98.15 98.08 97.87 98.10 100.00 98.28 97.25 97.87 98.72 98.78 98.48 97.67 100.00 100.00 98.64 98.44 94.37 100.00 97.22 94.87 100.00 97.06 100.00 97.06 98.41 100.00 100.00 92.75 98.15 95.83 100.00 95.92 97.37 98.04 99.05 97.37 98.54 98.57 98.39 96.36 98.75 95.06 98.15 98.73 96.36 100.00 100.00 100.00 90.38 98.94 95.52 98.94 98.41 K cassette CG8312 chr3R + chr3R_5417908_5447240 chr3R_5417908_5433634;chr3R_5433697_5447240 chr3R_5433635_5433696 chr3R_5417040_5417907;chr3R_5447241_5448139 93.75 100.00 85.71 100.00 NA NA 84.62 88.24 87.50 NA 100.00 100.00 NA 100.00 90.00 100.00 100.00 100.00 100.00 100.00 90.00 NA 85.71 100.00 NA NA NA NA NA NA 100.00 NA 100.00 94.44 85.71 71.43 NA NA 100.00 91.67 NA 90.00 NA 83.33 NA 87.50 NA 88.89 93.75 NA 85.71 NA NA NA 100.00 NA NA 75.00 K intron_retention CG5447 chr3R + chr3R_22278745_22278810 chr3R_22278744_22278745;chr3R_22278810_22278811 chr3R_22278576_22278744;chr3R_22278811_22278963 0.00 2.13 0.00 2.74 0.00 0.00 1.82 0.00 1.14 3.12 3.92 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 2.08 1.96 2.11 0.00 0.00 4.55 3.03 0.00 0.00 1.67 0.00 2.78 2.94 0.00 0.00 0.00 0.00 2.50 0.00 0.00 2.97 0.00 0.00 1.54 0.00 1.54 0.00 1.09 0.00 0.00 0.00 1.92 0.00 0.00 3.08 2.11 2.44 K intron_retention Ect4,I_chr3L_8075556_8086158,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8095662_8095992 chr3L_8095661_8095662;chr3L_8095992_8095993 chr3L_8095655_8095661;chr3L_8095993_8097918 30.00 NA NA 30.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 19.35 NA NA NA NA NA 46.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor l(2)05714,RI_chr2L_4970785_4971075,CRE_chr2L_4970785_4971082,I_chr2L_4970785_4973718,RI_chr2L_4971343_4973718 chr2L - chr2L_4970785_4971086;chr2L_4970785_4973718 chr2L_4970785_4971053 chr2L_4970685_4970784;chr2L_4973719_4973787 0.00 0.00 20.00 0.00 0.00 20.00 0.00 0.00 12.50 0.00 0.00 12.50 0.00 0.00 0.00 0.00 33.33 20.00 0.00 7.69 0.00 16.67 0.00 0.00 0.00 0.00 0.00 0.00 20.00 16.67 0.00 25.00 10.00 16.67 0.00 16.67 0.00 20.00 0.00 25.00 14.29 12.50 0.00 20.00 11.11 14.29 0.00 14.29 14.29 12.50 16.67 0.00 0.00 0.00 25.00 16.67 0.00 7.14 K intron_retention dbr,RI_chr2L_74573_75077 chr2L + chr2L_70550_70606 chr2L_70549_70550;chr2L_70606_70607 chr2L_68085_70549;chr2L_70607_71323 0.00 NA NA 5.88 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA 14.29 0.00 NA NA NA 0.00 NA 0.00 NA 0.00 NA 0.00 NA 11.76 0.00 NA 4.00 10.53 NA NA NA NA 0.00 0.00 NA NA K intron_retention Ef1gamma,E_chr3R_25046218_25047549 chr3R + chr3R_25046827_25046994 chr3R_25046826_25046827;chr3R_25046994_25046995 chr3R_25046365_25046826;chr3R_25046995_25047835 100.00 99.95 99.94 99.96 99.93 100.00 99.94 99.96 99.97 100.00 100.00 99.97 100.00 100.00 99.95 100.00 99.93 99.94 99.93 100.00 100.00 99.96 100.00 100.00 100.00 99.94 100.00 100.00 100.00 100.00 100.00 100.00 99.97 100.00 99.93 99.94 100.00 100.00 99.97 99.96 99.95 100.00 100.00 99.95 99.97 100.00 100.00 99.96 100.00 100.00 99.96 100.00 99.95 99.95 100.00 99.96 100.00 99.96 K alternative_donor CG4699 chr3R + chr3R_11619752_11620550;chr3R_11619570_11620550;chr3R_11619776_11620550;chr3R_11619676_11620550 chr3R_11619772_11620550 chr3R_11620551_11621301;chr3R_11619539_11619569 3.45 5.56 4.00 2.38 0.00 11.11 3.12 0.00 2.22 30.00 5.26 2.22 0.00 4.55 3.45 6.12 0.00 0.00 7.41 8.16 0.00 0.00 9.09 9.52 13.33 6.45 0.00 6.25 7.14 5.56 9.09 0.00 0.00 5.00 0.00 0.00 15.79 0.00 0.00 0.00 0.00 10.26 3.85 5.88 0.00 0.00 7.14 7.41 1.96 7.69 3.70 5.26 0.00 0.00 0.00 0.00 0.00 8.33 K alternative_last_exon MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17399683_17403481,chr2R_17399683_17403392,chr2R_17399683_17401733,chr2R_17399683_17401713;chr2R_17399683_17401021 chr2R_17399683_17399897 chr2R_17401022_17401310 chr2R_17399898_17400225 chr2R_17399598_17399682 29.79 21.82 25.49 46.25 16.67 16.33 65.75 54.17 32.29 25.00 53.66 55.26 41.38 27.50 28.00 40.91 45.16 41.18 38.89 34.31 34.29 25.00 18.82 23.94 27.45 35.42 29.31 33.73 43.10 29.03 27.12 31.75 36.47 35.53 30.61 28.81 15.48 18.87 17.81 27.62 47.22 27.85 37.14 34.92 32.93 33.71 22.08 41.18 26.92 36.62 16.30 26.83 18.03 24.56 29.79 20.51 23.21 35.79 K cassette Dap160,I_chr2L_21139943_21140007 chr2L - chr2L_21138031_21138711 chr2L_21138031_21138112;chr2L_21138362_21138711 chr2L_21138113_21138361 chr2L_21137757_21138030;chr2L_21138712_21139602 87.10 93.33 86.67 59.02 87.10 91.67 83.02 78.18 87.37 87.27 84.62 94.67 88.89 83.78 82.98 97.50 86.84 76.74 89.74 85.19 82.05 88.12 85.26 93.26 86.79 81.82 86.96 98.11 84.06 86.67 77.08 85.48 88.17 92.86 94.55 69.57 89.19 93.33 88.89 95.33 88.71 90.00 96.43 90.54 90.00 88.89 88.89 89.66 85.00 81.82 85.00 86.67 86.36 88.71 83.02 83.10 89.87 80.36 K alternative_acceptor CG8531,RI_chr2R_10144869_10144912 chr2R + chr2R_10144869_10144925 chr2R_10144869_10144912 chr2R_10144769_10144868;chr2R_10144926_10145012 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.58 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 1.22 0.00 0.00 1.03 0.00 0.00 0.83 2.61 0.59 0.00 0.62 0.63 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.57 0.43 1.88 0.46 0.00 0.00 0.55 0.48 0.00 0.45 0.60 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 K intron_retention Dcp2,F_chr3L_15815909_15816023,F_chr3L_15817090_15817547 chr3L - chr3L_15815909_15816062 chr3L_15815908_15815909;chr3L_15816062_15816063 chr3L_15815809_15815908;chr3L_15816063_15816123 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 1.11 1.89 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG33144,I_chr2R_6628662_6628748,I_chr2R_6654056_6669824 chr2R - chr2R_6628692_6628748 chr2R_6628691_6628692;chr2R_6628748_6628749 chr2R_6627593_6628691;chr2R_6628749_6628848 0.00 0.00 0.00 0.00 0.00 0.00 6.78 0.00 2.94 6.90 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 9.76 0.00 13.85 0.00 0.00 0.00 4.00 7.50 25.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 K jcn_only_AA Phax,RI_chr2R_5006333_5006392 chr2R + chr2R_5002689_5002743 chr2R_5002689_5002734 chr2R_5001956_5002688;chr2R_5002744_5002835 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 3.33 3.85 0.00 0.00 4.00 0.00 0.00 5.00 0.00 0.00 1.80 3.12 0.00 1.64 2.56 0.00 2.17 0.00 NA 2.63 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 3.70 0.00 0.00 0.00 0.00 3.17 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 K alternative_donor I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,RI_chr3R_17189607_17189988 chr3R - chr3R_17189607_17200781 chr3R_17189607_17189988 chr3R_17189507_17189606;chr3R_17200782_17200881 8.33 12.50 0.00 16.67 0.00 0.00 9.09 12.50 10.00 0.00 0.00 9.09 0.00 0.00 0.00 25.00 25.00 0.00 0.00 9.09 0.00 16.67 10.00 20.00 0.00 0.00 0.00 25.00 10.00 0.00 50.00 11.11 12.50 12.50 0.00 0.00 7.69 0.00 14.29 7.14 0.00 6.67 0.00 25.00 10.00 10.00 16.67 8.33 16.67 7.69 12.50 0.00 0.00 0.00 11.11 10.00 14.29 7.69 K alternative_donor CG9669,RI_chr3L_16837963_16838041,RI_chr3L_16837988_16838041 chr3L - chr3L_16837963_16838041 chr3L_16837963_16838019 chr3L_16837888_16837962;chr3L_16838042_16838062 77.78 76.67 70.37 81.25 62.50 61.90 78.95 79.63 78.87 77.78 87.50 88.64 80.00 73.33 76.92 80.49 79.31 77.78 90.62 81.82 69.57 NA 86.67 77.27 70.00 70.83 82.76 76.19 70.00 92.31 81.08 80.65 83.33 76.92 81.25 90.00 66.67 60.00 66.67 73.08 77.14 76.19 78.95 82.14 82.05 83.72 65.22 71.43 76.92 75.86 78.95 79.17 83.33 76.92 75.76 75.76 71.15 82.81 K intron_retention MEP-1,CG42245,noncoding_10195,CG1143 chr3L + chr3L_2632467_2633537 chr3L_2632466_2632467;chr3L_2633537_2633538 chr3L_2632440_2632466;chr3L_2633538_2633809 11.65 NA NA 0.00 NA NA 14.29 12.50 9.09 NA NA 11.54 14.29 9.52 NA 13.33 NA NA 10.53 6.67 NA 29.03 7.14 9.09 15.00 20.00 15.00 0.00 15.38 3.85 10.00 NA 22.22 8.33 NA 0.00 15.00 14.29 6.67 9.09 NA 15.38 18.75 8.33 NA 14.29 15.38 20.00 8.33 17.65 6.45 5.26 NA NA 11.76 NA NA NA K intron_retention T-cp1 chr3R - chr3R_18316744_18316980 chr3R_18316743_18316744;chr3R_18316980_18316981 chr3R_18316590_18316743;chr3R_18316981_18317073 0.00 0.00 0.97 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.25 0.00 2.78 0.28 0.71 0.00 0.00 0.00 0.00 3.20 0.00 0.00 0.00 0.37 0.00 0.83 0.66 0.00 0.00 0.57 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.66 0.00 0.00 0.00 0.52 0.63 0.00 0.00 K alternative_acceptor RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817 chr2R + chr2R_15329995_15330122 chr2R_15329995_15330086 chr2R_15329948_15329994;chr2R_15330123_15330245 0.16 0.14 0.72 0.12 0.00 0.48 1.24 0.11 0.14 0.22 0.69 0.12 1.01 0.56 0.91 0.21 1.95 1.02 2.00 0.08 0.61 0.06 0.11 0.14 0.32 2.53 0.39 0.23 0.41 0.38 2.51 0.15 0.14 0.12 0.07 0.64 0.06 0.10 0.11 0.17 0.61 0.14 0.00 0.20 0.07 0.13 0.14 0.16 0.25 0.25 0.14 0.19 0.10 0.07 0.32 0.14 0.07 0.09 K jcn_only_AA endoB chr2R - chr2R_15196319_15196897 chr2R_15196737_15196897 chr2R_15196898_15197088 2.78 1.16 3.41 8.45 0.00 0.00 10.17 1.30 2.80 6.67 2.17 5.15 4.00 1.85 3.66 6.58 4.35 1.06 0.00 5.21 3.70 0.00 0.93 1.64 0.00 5.10 3.61 8.33 4.35 0.91 1.64 2.90 1.55 2.20 0.00 2.48 2.72 4.17 6.40 1.68 4.65 1.45 4.76 3.08 4.46 2.30 5.13 4.72 3.31 1.47 2.60 7.69 0.00 0.00 2.04 2.41 2.78 3.42 K intron_retention step chr2L - chr2L_21742699_21742775 chr2L_21742698_21742699;chr2L_21742775_21742776 chr2L_21742524_21742698;chr2L_21742776_21742875 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.23 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RN-tre chr2R - chr2R_9873352_9873494 chr2R_9873351_9873352;chr2R_9873494_9873495 chr2R_9873135_9873351;chr2R_9873495_9873549 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 2.70 0.00 0.00 3.23 0.00 0.60 0.00 1.20 0.00 0.00 0.00 0.00 1.77 3.45 2.78 0.00 1.82 0.00 0.00 0.00 0.00 0.00 1.02 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 1.80 0.00 0.58 2.60 1.12 0.00 1.64 0.89 0.73 0.00 K alternative_donor CG3719,E_chrX_1273406_1273479,I_chrX_1273406_1273486,RI_chrX_1273406_1273763 chrX - chrX_1273406_1274170;chrX_1273406_1273763 chrX_1273406_1273486 chrX_1273306_1273405;chrX_1274171_1274773 3.23 1.96 3.03 3.57 3.12 3.70 2.33 2.33 2.67 4.35 4.55 3.23 3.33 3.85 2.50 6.67 5.56 4.76 3.03 2.90 0.00 3.03 2.44 4.26 4.00 2.86 4.00 4.35 3.57 2.78 6.67 6.67 5.00 1.89 5.56 2.94 1.37 2.44 1.64 3.28 5.41 4.00 0.00 0.00 4.26 3.85 3.92 7.69 3.17 0.00 2.63 3.70 3.33 2.44 3.12 1.89 1.64 6.98 K intron_retention CG5850,I_chr2L_9963013_9963451 chr2L - chr2L_9962415_9962470 chr2L_9962414_9962415;chr2L_9962470_9962471 chr2L_9962318_9962414;chr2L_9962471_9962677 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042888_5043077;chr2L_5042888_5042983 chr2L_5042888_5042960 chr2L_5042835_5042887;chr2L_5043078_5043083 72.91 NA NA 69.23 NA NA 68.00 62.96 68.42 NA NA 57.89 NA NA 70.83 72.73 NA NA 81.82 73.81 NA NA 68.18 85.71 NA NA NA NA 71.43 90.48 NA NA 87.50 78.12 NA NA NA NA NA 75.68 84.00 84.85 NA NA NA 83.33 72.73 71.43 67.74 NA 92.00 NA NA NA 45.00 NA 73.08 92.31 K intron_retention Pof chr2R + chr2R_20556998_20557050 chr2R_20556997_20556998;chr2R_20557050_20557051 chr2R_20556952_20556997;chr2R_20557051_20557123 88.89 NA NA NA NA NA NA 88.89 NA NA NA 83.33 NA NA 88.89 90.91 NA NA NA 80.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA 77.78 66.67 NA NA NA NA 80.00 NA NA NA K intron_retention CG7091,RI_chr3R_8805541_8805680,I_chr3R_8809774_8809832 chr3R + chr3R_8804833_8804890 chr3R_8804832_8804833;chr3R_8804890_8804891 chr3R_8804612_8804832;chr3R_8804891_8805199 0.00 0.00 0.00 0.00 0.00 0.00 2.22 4.26 0.00 NA 0.00 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 6.25 0.00 0.00 NA 0.00 0.00 5.56 30.77 0.00 4.00 0.00 NA 8.51 0.00 NA 0.00 4.55 0.00 0.00 NA 2.86 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 2.94 5.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention MB8.chr3R.pasa.66,CG10055 chr3R - chr3R_3011480_3011535 chr3R_3011479_3011480;chr3R_3011535_3011536 chr3R_3009698_3011479;chr3R_3011536_3011932 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention MSBP,I_chrX_15783766_15784027,RI_chrX_15783766_15784064,I_chrX_15783766_15785978 chrX - chrX_15783998_15784064 chrX_15783997_15783998;chrX_15784064_15784065 chrX_15783942_15783997;chrX_15784065_15784071 56.25 54.55 52.33 36.69 50.79 48.00 47.23 46.45 47.58 62.16 46.75 50.97 36.17 47.92 62.96 44.33 48.48 45.57 52.17 46.22 47.22 70.69 71.62 60.47 78.79 86.44 78.85 90.00 87.04 75.44 52.34 65.85 45.61 48.77 56.25 75.00 56.45 71.88 50.00 78.05 84.44 43.01 52.00 75.00 58.70 75.47 58.49 72.88 44.06 50.00 70.83 56.52 73.08 81.82 52.38 67.44 55.84 67.61 K cassette Nipped-B,I_chr2R_583116_587893,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_583116_587893 chr2R_583116_586563;chr2R_586657_587893 chr2R_586564_586656 chr2R_583016_583115;chr2R_587894_587993 93.75 93.33 94.12 64.52 100.00 100.00 94.37 97.73 90.20 85.71 100.00 83.33 100.00 88.46 90.91 97.87 93.75 86.67 88.46 97.44 100.00 90.91 94.29 94.44 100.00 70.00 96.67 88.24 84.62 100.00 84.00 100.00 100.00 97.30 95.00 90.00 100.00 90.00 100.00 95.65 88.89 84.62 86.67 91.30 NA 92.86 90.91 100.00 97.78 90.00 100.00 100.00 88.89 NA 92.31 100.00 92.31 92.31 K intron_retention vav chrX + chrX_19165488_19165551 chrX_19165487_19165488;chrX_19165551_19165552 chrX_19165316_19165487;chrX_19165552_19166086 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818597_7818853;chr3R_7818607_7818853 chr3R_7818575_7818853 chr3R_7818854_7818892;chr3R_7818507_7818574 71.88 NA 60.71 50.00 NA NA 64.00 75.00 68.42 NA NA 65.52 NA 60.00 NA 75.86 60.71 NA 70.37 73.53 76.19 NA NA NA NA NA NA NA NA NA NA NA 80.00 73.68 NA NA NA NA NA NA NA 74.29 57.14 NA NA 76.19 NA NA 72.50 NA 77.27 NA NA NA 52.38 NA NA 71.88 K jcn_only_AD CG4658,I_chr2L_9958819_9958939 chr2L + chr2L_9958819_9958939 chr2L_9958886_9958939 chr2L_9958940_9959039;chr2L_9958719_9958818 100.00 98.21 97.96 100.00 100.00 97.78 100.00 97.65 99.30 97.30 100.00 98.61 97.67 100.00 97.06 98.21 98.44 100.00 100.00 100.00 97.92 99.06 100.00 96.72 97.06 98.04 100.00 100.00 100.00 100.00 96.88 100.00 97.65 100.00 97.06 100.00 100.00 98.51 98.57 100.00 100.00 100.00 100.00 100.00 97.70 100.00 97.87 100.00 100.00 98.33 98.51 97.14 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA l(2)s5379,I_chr2L_2227282_2227349,I_chr2L_2229179_2229265 chr2L + chr2L_2227282_2229265 chr2L_2227282_2227349 chr2L_2227182_2227281;chr2L_2229266_2229365 0.61 0.60 0.46 0.77 1.30 0.61 1.38 1.22 0.00 0.00 1.33 1.52 0.00 0.70 0.78 0.38 0.62 4.79 0.84 1.82 0.63 1.58 0.00 0.00 1.22 1.13 0.00 0.00 1.19 0.96 1.28 0.38 0.57 0.53 0.83 0.55 0.00 0.90 1.84 0.46 0.00 0.00 1.27 1.06 0.70 0.23 0.00 0.90 0.50 0.00 0.00 0.00 0.00 0.71 1.20 0.00 0.00 0.33 K alternative_donor RI_chr2R_12650846_12659758,Sod2 chr2R - chr2R_12661144_12661368 chr2R_12661144_12661259 chr2R_12660421_12661143;chr2R_12661369_12661392 100.00 98.91 100.00 99.15 98.41 100.00 99.03 96.90 97.89 98.11 100.00 99.42 100.00 98.75 98.78 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 98.94 100.00 100.00 100.00 100.00 98.36 97.87 98.61 98.70 100.00 99.13 100.00 100.00 98.92 100.00 99.07 100.00 100.00 98.68 100.00 98.67 100.00 100.00 98.95 97.22 100.00 100.00 100.00 100.00 100.00 100.00 98.77 98.94 99.18 100.00 K alternative_donor CG1718 chrX - chrX_21163958_21164368;chrX_21163958_21164182 chrX_21163958_21164390 chrX_21163741_21163957;chrX_21164391_21164557 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 4.55 0.00 0.00 7.14 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 5.00 0.00 3.70 0.00 6.25 0.00 0.00 3.45 0.00 0.00 0.00 0.00 5.56 2.78 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 7.14 0.00 5.00 0.00 4.35 0.00 K jcn_only_AD ran,I_chrX_11040449_11042518,I_chrX_11040462_11041873,I_chrX_11040462_11042000 chrX - chrX_11040462_11042000;chrX_11040462_11042518 chrX_11040462_11041873 chrX_11040362_11040461;chrX_11042519_11042618 0.36 0.40 0.09 0.33 0.15 0.13 0.22 0.19 0.29 0.45 0.00 0.12 0.00 0.23 0.09 0.00 0.41 0.33 0.10 0.31 0.11 0.52 0.44 0.16 0.13 0.29 0.31 0.82 1.20 0.61 0.46 1.00 1.04 0.48 0.13 0.62 1.03 0.37 1.03 0.59 0.94 0.27 0.38 0.36 0.68 0.36 0.18 1.68 0.25 0.48 0.47 0.78 0.38 0.33 0.44 0.75 0.33 0.93 K intron_retention CG3744,I_chr3R_20701248_20701968 chr3R - chr3R_20697876_20697940 chr3R_20697875_20697876;chr3R_20697940_20697941 chr3R_20697211_20697875;chr3R_20697941_20698133 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 5.71 0.00 0.00 5.41 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20824494_20825271 chr2L_20824493_20824494;chr2L_20825271_20825272 chr2L_20824482_20824493;chr2L_20825272_20825366 59.55 NA NA 59.09 NA NA 62.07 55.00 56.52 NA 36.84 66.67 NA 54.55 NA 50.00 NA 36.36 63.64 64.00 NA 66.67 NA NA 63.64 NA 72.73 NA NA NA 41.67 NA 25.00 69.23 NA 60.00 NA NA NA 50.00 NA 40.00 NA NA 15.79 66.67 NA 41.67 60.87 87.50 87.50 NA NA NA 58.33 NA 100.00 NA K intron_retention dos,I_chr3L_2589746_2592161 chr3L + chr3L_2592487_2592552 chr3L_2592486_2592487;chr3L_2592552_2592553 chr3L_2592162_2592486;chr3L_2592553_2593319 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 3.77 1.13 0.00 2.27 0.00 0.00 1.63 5.37 0.00 1.23 0.00 0.00 1.05 1.18 0.96 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Rab23,I_chr3R_1508710_1508882 chr3R - chr3R_1508710_1508882;chr3R_1508710_1510597 chr3R_1508710_1511119 chr3R_1508610_1508709;chr3R_1511120_1511186 50.00 50.00 60.00 50.00 66.67 0.00 60.00 80.00 75.00 66.67 63.64 77.78 60.00 33.33 33.33 57.14 50.00 62.50 50.00 73.68 50.00 50.00 33.33 33.33 0.00 66.67 50.00 25.00 25.00 33.33 77.78 66.67 33.33 62.50 50.00 25.00 33.33 0.00 33.33 80.00 0.00 72.73 50.00 50.00 NA 60.00 50.00 25.00 80.00 50.00 33.33 50.00 75.00 NA 87.50 50.00 33.33 80.00 K intron_retention Zfrp8 chr2R + chr2R_20021950_20022003 chr2R_20021949_20021950;chr2R_20022003_20022004 chr2R_20021876_20021949;chr2R_20022004_20022890 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 5.88 12.50 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette capu,I_chr2L_3884519_3902594,I_chr2L_3887800_3888648,I_chr2L_3887896_3888648 chr2L - chr2L_3884519_3893261 chr2L_3884519_3886983;chr2L_3887800_3893261 chr2L_3886984_3887799 chr2L_3884419_3884518;chr2L_3893262_3893604 98.18 98.08 100.00 98.46 100.00 100.00 98.11 100.00 100.00 96.15 97.50 98.82 97.62 100.00 98.00 97.87 100.00 97.78 97.50 98.90 100.00 97.37 98.77 98.59 97.62 95.35 98.48 100.00 98.18 98.15 95.74 96.88 98.44 100.00 98.18 98.46 98.86 98.25 98.80 95.65 100.00 98.89 100.00 98.08 97.30 98.18 98.04 94.81 98.84 97.92 100.00 97.50 97.44 97.14 98.04 97.62 97.78 96.15 K intron_retention CG8538 chr3R - chr3R_10151801_10151858 chr3R_10151800_10151801;chr3R_10151858_10151859 chr3R_10150479_10151800;chr3R_10151859_10151953 2.94 NA NA NA NA NA NA NA 11.11 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 5.88 NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA K alternative_donor rdx,I_chr3R_9796825_9822742,I_chr3R_9849617_9851443 chr3R - chr3R_9849617_9851560;chr3R_9849617_9851443 chr3R_9849617_9851567 chr3R_9849583_9849616;chr3R_9851568_9851588 67.95 NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA 55.56 NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 69.23 NA NA NA NA NA NA NA NA NA K jcn_only_AD Gel,I_chr3R_63540_64006,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_63540_64024 chr3R_63962_64024 chr3R_64025_64099;chr3R_63440_63539 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.08 0.00 0.00 0.00 0.33 0.00 0.13 0.15 0.00 0.00 0.00 0.08 0.19 1.71 0.00 0.00 0.00 0.22 0.00 0.00 0.68 0.00 0.42 0.00 0.40 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.22 0.16 0.00 0.00 0.00 0.49 0.09 0.29 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA drpr,I_chr3L_1718097_1718705,I_chr3L_1718154_1723579,I_chr3L_1720385_1723579 chr3L - chr3L_1718097_1718705 chr3L_1718154_1718705 chr3L_1718706_1718805;chr3L_1718054_1718096 100.00 99.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Pk61C,CE_chr3L_129889_141769,I_chr3L_132531_133824,I_chr3L_133962_134014 chr3L + chr3L_132056_135457;chr3L_132531_135457;chr3L_131934_135457 chr3L_131959_135457 chr3L_135458_135842;chr3L_131849_131933 1.14 0.00 0.00 8.82 4.55 NA NA 2.27 7.14 NA NA 0.00 NA NA 0.00 NA NA NA 0.00 4.76 NA NA 4.00 NA NA 6.25 NA NA NA 4.55 NA NA 4.00 6.67 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 3.57 NA NA NA NA NA 0.00 NA NA 0.00 K jcn_only_AD CG4165,I_chrX_5317784_5317881,I_chrX_5321743_5321838 chrX + chrX_5316160_5316612;chrX_5316300_5316612;chrX_5315965_5316612 chrX_5316313_5316612 chrX_5316613_5317050;chrX_5315939_5315964 0.00 0.00 NA 0.00 NA NA NA 4.17 0.00 NA NA 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA 2.94 0.00 NA NA NA 4.35 NA NA 4.17 NA NA 0.00 0.00 0.00 0.00 3.23 NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K jcn_only_AA frtz chr2L - chr2L_1714474_1715138;chr2L_1714427_1715138 chr2L_1714406_1715138 chr2L_1715139_1715811;chr2L_1714173_1714405 0.00 NA NA 4.17 NA NA 0.00 2.86 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 1.96 NA 0.00 2.56 3.23 0.00 0.00 0.00 0.00 5.00 0.00 NA NA 0.00 NA 5.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 0.00 3.57 NA NA 0.00 NA 4.55 NA N cassette CG4829,I_chrX_16717240_16717547 chrX + chrX_16711168_16717135 chrX_16711168_16716589;chrX_16716806_16717135 chrX_16716590_16716805 chrX_16711045_16711167;chrX_16717136_16717239 100.00 100.00 100.00 89.15 93.81 92.89 88.97 90.84 93.53 100.00 100.00 94.30 100.00 93.17 96.04 90.29 93.48 100.00 93.14 97.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.62 89.93 100.00 100.00 94.05 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.01 93.83 100.00 100.00 100.00 100.00 100.00 96.23 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor PP2A-B' chr3R + chr3R_14001957_14002031 chr3R_14001957_14002028 chr3R_14001726_14001956;chr3R_14002032_14002421 98.15 96.77 100.00 100.00 100.00 100.00 97.44 97.92 98.33 100.00 94.44 98.04 95.83 96.00 100.00 100.00 100.00 95.65 95.83 98.15 93.75 100.00 97.83 97.22 100.00 100.00 100.00 100.00 94.12 96.15 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 97.50 100.00 97.06 97.87 94.12 98.33 96.30 97.96 96.97 95.24 100.00 96.55 96.55 98.15 96.00 K jcn_only_AA CG12077,F_chr3L_3318595_3318666,RI_chr3L_3318595_3318691 chr3L - chr3L_3318590_3318691 chr3L_3318595_3318691 chr3L_3318692_3318766;chr3L_3318495_3318589 0.00 NA 4.55 0.00 NA NA 0.00 0.00 0.00 NA NA 5.00 NA NA NA 0.00 NA NA NA 4.65 NA 0.00 6.00 0.00 4.76 NA 2.70 3.57 NA NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 4.76 0.00 NA NA NA NA 0.00 NA NA K intron_retention I_chr2R_19265701_19270570,CG3520 chr2R - chr2R_19288101_19289149 chr2R_19288100_19288101;chr2R_19289149_19289150 chr2R_19287882_19288100;chr2R_19289150_19289425 2.86 NA 0.00 0.00 4.55 NA 0.00 4.35 0.00 NA NA 6.25 NA NA 5.00 5.56 0.00 0.00 NA 0.00 0.00 60.00 4.44 2.86 5.56 NA 3.23 0.00 15.38 0.00 0.00 NA 15.00 8.33 0.00 8.33 2.13 0.00 5.56 3.57 NA 2.38 0.00 4.76 NA 14.29 NA NA 0.00 5.88 5.71 NA NA NA 0.00 0.00 NA NA K intron_retention CG42637,CG42636,EF_chr3L_19783353_19784547,I_chr3L_19783355_19783974,I_chr3L_19783355_19784551,RI_chr3L_19783355_19786527,I_chr3L_19783355_19786594 chr3L - chr3L_19783355_19783983 chr3L_19783354_19783355;chr3L_19783983_19783984 chr3L_19783255_19783354;chr3L_19783984_19784074 29.41 NA 30.77 26.32 NA NA 30.77 14.29 26.32 NA NA 29.41 45.45 29.41 NA 22.73 NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 29.41 NA NA NA NA NA 46.15 NA 20.00 14.29 NA NA NA NA NA 34.78 NA 33.33 NA NA NA NA NA NA NA K jcn_only_AA rin,I_chr3R_9476825_9476895 chr3R + chr3R_9472923_9473104;chr3R_9472923_9474639 chr3R_9472923_9473143 chr3R_9472709_9472922 0.00 0.63 0.00 1.98 0.00 0.00 0.00 0.21 0.32 0.00 0.54 0.25 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.55 0.86 0.00 0.00 0.78 0.80 0.00 1.54 0.44 0.00 0.59 0.39 0.00 0.96 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.76 0.00 NA 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2815654_2816013 chr2R_2815653_2815654;chr2R_2816013_2816014 chr2R_2815599_2815653;chr2R_2816014_2816113 90.45 NA NA NA NA NA 100.00 NA NA NA NA 90.00 NA NA NA NA NA NA NA 73.33 NA 100.00 90.91 NA NA NA NA NA NA 90.91 NA NA 80.00 NA NA NA 73.33 NA 100.00 92.31 72.73 87.50 NA NA NA 81.82 NA 92.31 NA NA NA NA NA NA NA NA NA NA K intron_retention CG14184,I_chr3L_20021910_20021979 chr3L - chr3L_20021479_20021745 chr3L_20021478_20021479;chr3L_20021745_20021746 chr3L_20021345_20021478;chr3L_20021746_20021909 0.00 0.00 0.00 0.00 0.00 0.00 2.99 0.00 1.68 0.00 0.00 3.88 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 2.99 0.00 2.56 1.41 2.44 0.00 0.00 0.00 0.00 0.00 1.41 0.00 2.33 0.00 1.59 0.00 0.00 0.00 1.72 0.00 0.00 0.00 K alternative_donor BtbVII,I_chr3L_3150858_3150927,I_chr3L_3151185_3151263 chr3L + chr3L_3148688_3149627;chr3L_3148748_3149627 chr3L_3148738_3149627 chr3L_3149628_3150153;chr3L_3148679_3148687 0.00 NA NA 9.09 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 K alternative_last_exon sgg,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2567652_2571133 chrX_2567652_2568629 chrX_2571134_2572136 chrX_2568630_2570701 chrX_2567208_2567651 94.87 96.88 96.55 96.20 89.47 92.00 97.14 96.10 96.51 91.18 100.00 94.03 97.30 97.37 94.12 97.10 96.43 97.14 97.56 95.35 95.65 91.84 95.92 93.18 92.86 97.14 94.87 89.47 90.24 91.67 91.89 93.18 91.04 95.52 93.10 95.35 95.24 91.67 93.10 94.37 95.31 94.20 96.55 92.00 83.93 90.32 94.00 86.57 94.67 97.50 94.00 96.15 97.06 96.88 97.14 94.29 96.30 93.42 K intron_retention Cdc42 chrX + chrX_19592279_19592339 chrX_19592278_19592279;chrX_19592339_19592340 chrX_19591968_19592278;chrX_19592340_19593717 0.00 0.00 0.00 0.28 0.00 0.37 0.17 0.00 0.00 0.00 0.00 0.21 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.19 0.00 0.57 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.13 0.16 0.00 0.20 0.16 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 K alternative_acceptor sxc,I_chr2R_1203985_1205289,I_chr2R_1208121_1213310,I_chr2R_1213177_1213308 chr2R + chr2R_1194858_1194977 chr2R_1194858_1194918 chr2R_1194848_1194857;chr2R_1194978_1195157 100.00 100.00 93.75 100.00 100.00 100.00 100.00 97.06 96.88 100.00 90.91 100.00 95.65 100.00 100.00 97.62 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 NA 100.00 96.97 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 92.31 100.00 NA NA 100.00 100.00 97.44 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 K intron_retention casp,EI_chr2R_11914764_11914841 chr2R - chr2R_11913360_11913417 chr2R_11913359_11913360;chr2R_11913417_11913418 chr2R_11913214_11913359;chr2R_11913418_11913572 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 3.88 0.00 0.00 0.00 0.00 4.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 2.94 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 2.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 K jcn_only_AD Hr39,I_chr2L_21256047_21256260 chr2L + chr2L_21237347_21238280;chr2L_21237385_21238280;chr2L_21237364_21238280;chr2L_21237397_21238280;chr2L_21237405_21238280 chr2L_21237421_21238280 chr2L_21238281_21238529;chr2L_21237247_21237346 44.44 NA NA 60.00 NA NA 60.00 51.61 34.15 NA NA 45.71 39.13 NA NA 28.57 NA NA NA 33.33 NA NA 26.47 45.00 NA NA 34.38 NA NA NA 40.91 NA NA 44.44 45.45 NA NA NA NA 23.53 NA 37.14 NA 20.83 NA NA NA 50.00 45.24 NA 54.17 NA NA NA 58.33 NA NA NA K intron_retention sqd,I_chr3R_9462248_9471474,I_chr3R_9470417_9471474 chr3R - chr3R_9470293_9471474 chr3R_9470292_9470293;chr3R_9471474_9471475 chr3R_9470231_9470292;chr3R_9471475_9471574 41.67 NA NA NA NA NA 60.00 46.15 53.33 NA NA 46.15 NA NA NA NA NA NA NA 38.89 NA NA 20.00 NA 54.55 NA NA 41.67 NA NA 19.05 NA NA 41.67 NA NA NA NA NA 21.43 NA 40.00 NA NA NA NA NA NA 23.81 NA NA NA NA NA NA NA NA NA K intron_retention CG5317 chr2L + chr2L_12057148_12057214 chr2L_12057147_12057148;chr2L_12057214_12057215 chr2L_12056499_12057147;chr2L_12057215_12058251 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.52 0.00 0.00 0.53 0.27 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.39 0.00 0.60 1.70 5.13 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.41 0.23 0.00 0.00 0.00 0.49 0.33 0.00 0.40 0.38 0.37 0.33 0.00 0.38 0.49 0.00 0.52 0.49 0.00 K jcn_only_AA Usp7,I_chrX_11922059_11922456 chrX - chrX_11922059_11922456 chrX_11922073_11922456 chrX_11922457_11922556;chrX_11921983_11922058 100.00 100.00 100.00 98.57 100.00 100.00 96.92 100.00 98.23 100.00 96.77 100.00 100.00 97.83 100.00 100.00 97.96 97.30 100.00 100.00 100.00 100.00 98.31 98.15 96.43 97.30 97.56 72.41 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 97.22 95.65 100.00 100.00 100.00 97.14 97.87 NA 100.00 96.00 100.00 98.33 NA 98.15 100.00 NA NA 100.00 100.00 NA NA K jcn_only_AD CG30389,CEF_chr2R_17041552_17043191,I_chr2R_17044803_17047935 chr2R - chr2R_17041672_17042219 chr2R_17041672_17042048 chr2R_17041640_17041671;chr2R_17042220_17042432 0.20 1.15 0.00 2.56 0.00 NA 1.89 0.00 0.00 2.00 NA 3.39 0.00 0.00 3.57 5.56 0.00 NA NA 1.29 0.00 0.00 1.48 0.46 0.00 NA 0.65 0.00 1.16 0.83 0.00 0.00 0.00 0.00 0.00 1.40 1.47 0.60 0.40 0.00 0.00 0.00 NA 0.63 0.00 1.18 0.85 6.35 0.00 0.74 0.00 0.00 2.86 0.00 0.00 2.56 1.12 NA K jcn_only_AA CG3074,I_chr2R_18079355_18080538,I_chr2R_18079355_18089994 chr2R - chr2R_18079355_18080538 chr2R_18079361_18080538 chr2R_18080539_18080638;chr2R_18079255_18079354 100.00 NA 100.00 96.30 100.00 100.00 96.55 100.00 100.00 NA NA 97.73 NA 95.65 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 96.88 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 90.00 100.00 96.55 100.00 98.18 96.00 100.00 100.00 100.00 100.00 95.35 100.00 100.00 100.00 NA NA NA 100.00 100.00 100.00 NA K intron_retention pgant5,I_chr2L_5074530_5077534,I_chr2L_5079575_5093241 chr2L - chr2L_5077258_5077534 chr2L_5077257_5077258;chr2L_5077534_5077535 chr2L_5077077_5077257;chr2L_5077535_5077634 4.29 2.90 1.37 6.19 0.00 2.74 9.23 6.45 5.84 1.39 4.84 3.08 4.55 7.81 4.35 2.78 6.38 5.26 5.06 4.29 2.53 5.88 5.75 1.39 6.52 5.00 4.76 10.71 2.50 3.81 0.00 5.17 4.49 5.50 1.54 4.41 4.35 5.63 5.15 1.91 1.41 4.12 6.35 3.30 0.00 1.92 6.12 2.29 6.15 0.00 2.50 4.44 4.08 3.92 2.44 0.00 4.17 0.77 N jcn_only_AD 4EHP,RI_chr3R_19927769_19928262 chr3R - chr3R_19927769_19932546;chr3R_19927769_19929293 chr3R_19927769_19928262 chr3R_19927676_19927768;chr3R_19932547_19933006 0.00 0.00 1.96 1.16 4.08 2.22 2.27 1.67 1.50 NA NA 0.00 0.00 0.00 0.00 4.76 0.00 2.38 2.04 2.53 NA 1.75 0.00 0.00 0.00 0.00 2.08 4.00 0.00 0.00 1.89 NA 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K cassette CG2316,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_213991,RI_chr4_210688_214450 chr4 - chr4_208796_209050 chr4_208796_208855;chr4_208996_209050 chr4_208856_208995 chr4_208696_208795;chr4_209051_209147 94.12 98.04 93.44 83.96 95.92 92.59 90.00 97.18 96.86 89.47 95.83 92.56 98.51 96.67 95.16 86.79 93.06 94.12 92.39 96.00 83.72 100.00 88.37 97.50 93.55 67.31 95.74 90.48 94.44 92.50 84.62 94.12 92.00 92.96 92.50 50.00 90.62 93.94 96.77 95.24 92.59 94.26 98.59 98.33 95.65 97.50 97.14 97.06 91.18 97.14 98.36 97.37 92.86 95.83 95.24 96.97 90.24 92.00 K intron_retention I_chr2R_19932706_19933121,gammaSnap chr2R - chr2R_19935784_19935857 chr2R_19935783_19935784;chr2R_19935857_19935858 chr2R_19935589_19935783;chr2R_19935858_19935973 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Vps4,I_chrX_17802079_17802606 chrX + chrX_17802747_17802840 chrX_17802746_17802747;chrX_17802840_17802841 chrX_17802607_17802746;chrX_17802841_17803702 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.31 0.00 0.25 0.00 0.00 0.00 0.44 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG31689,I_chr2L_2730373_2736310,I_chr2L_2736431_2737036 chr2L + chr2L_2736431_2737036 chr2L_2736431_2737031 chr2L_2736331_2736430;chr2L_2737037_2737136 100.00 98.31 98.11 100.00 97.50 97.62 100.00 100.00 100.00 NA 100.00 98.94 100.00 95.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.60 100.00 100.00 99.24 98.11 98.04 96.92 97.50 96.77 92.00 98.80 100.00 98.51 98.77 100.00 99.04 97.87 100.00 98.39 95.24 100.00 100.00 100.00 94.12 100.00 99.05 100.00 100.00 100.00 100.00 100.00 97.14 98.59 100.00 100.00 K alternative_acceptor SelR,I_chr3R_6692390_6692530,I_chr3R_6692461_6692530,I_chr3R_6694098_6694160 chr3R - chr3R_6692416_6692530 chr3R_6692461_6692530 chr3R_6692531_6692630;chr3R_6692361_6692415 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 2.27 0.00 0.00 0.00 1.79 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention cni,RI_chr2L_16309575_16309999,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16310380_16310440 chr2L_16310379_16310380;chr2L_16310440_16310441 chr2L_16310267_16310379;chr2L_16310441_16310623 0.00 0.74 0.00 1.83 0.00 1.57 1.60 1.15 0.53 0.00 0.79 0.00 0.00 0.00 0.00 0.47 1.67 0.00 0.00 1.13 0.00 0.00 0.61 0.00 2.11 0.76 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.70 0.00 0.74 0.00 0.00 0.00 0.00 0.84 0.77 0.00 1.98 0.00 0.95 1.11 0.00 0.00 0.00 K jcn_only_AD CG8312 chr3R + chr3R_5433697_5447240 chr3R_5433701_5447240 chr3R_5447241_5448139;chr3R_5433636_5433696 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention sdt,C_chrX_8118081_8119117,I_chrX_8131684_8131842 chrX + chrX_8087420_8087500 chrX_8087419_8087420;chrX_8087500_8087501 chrX_8087382_8087419;chrX_8087501_8087534 95.45 93.75 96.15 94.74 100.00 100.00 100.00 96.88 87.27 91.67 100.00 93.75 100.00 90.48 100.00 88.89 93.75 93.75 100.00 95.65 100.00 91.67 96.00 95.45 100.00 100.00 86.67 87.50 100.00 100.00 95.83 NA 68.75 96.88 86.67 91.67 95.00 92.31 83.33 90.91 NA 93.48 100.00 95.45 90.91 100.00 88.89 100.00 97.30 90.00 96.00 92.31 91.67 NA 96.43 100.00 NA 100.00 K intron_retention CG10737 chr2R + chr2R_15061871_15062081 chr2R_15061870_15061871;chr2R_15062081_15062082 chr2R_15061844_15061870;chr2R_15062082_15062288 4.79 5.56 4.55 2.61 4.95 3.77 17.33 4.79 3.65 0.00 5.63 3.80 2.63 2.30 6.19 7.69 6.94 5.10 3.26 6.53 6.49 8.25 5.17 7.23 6.12 3.33 4.62 7.55 3.64 2.56 6.31 3.77 3.23 5.00 3.12 2.47 6.06 9.76 4.46 5.08 8.62 3.76 6.15 3.60 0.00 3.03 5.10 2.56 6.91 5.77 4.42 4.08 6.17 3.37 5.50 5.97 4.72 2.15 K alternative_acceptor Sucb chr3L - chr3L_5555968_5556184 chr3L_5555972_5556184 chr3L_5556185_5556284;chr3L_5555387_5555967 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.00 100.00 100.00 97.44 94.44 100.00 96.55 96.55 100.00 100.00 100.00 97.92 95.24 97.30 100.00 100.00 100.00 100.00 100.00 100.00 96.30 95.45 95.65 100.00 100.00 96.77 93.10 95.83 100.00 95.00 96.67 98.36 96.88 97.83 100.00 96.77 100.00 100.00 100.00 98.48 97.67 100.00 100.00 100.00 94.74 100.00 100.00 100.00 94.12 90.77 K alternative_donor CoRest,I_chrX_19416977_19417035 chrX + chrX_19416603_19417035;chrX_19416977_19417035;chrX_19416669_19417035;chrX_19416423_19417035 chrX_19416431_19417035 chrX_19417036_19417135;chrX_19416201_19416422 11.54 14.06 19.44 11.54 10.00 12.20 10.53 13.46 11.11 14.71 14.71 11.25 8.82 5.88 6.67 6.38 12.50 4.76 5.56 9.28 12.12 10.29 13.19 12.66 6.82 11.32 14.06 7.69 10.20 12.00 9.30 7.32 16.36 8.33 14.55 10.77 10.28 12.36 11.90 10.78 13.04 8.99 14.29 12.00 14.58 15.69 11.54 12.07 16.05 16.33 9.57 11.36 13.16 6.25 11.32 13.64 7.32 15.22 K intron_retention Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21124522_21125346 chr2L_21124521_21124522;chr2L_21125346_21125347 chr2L_21124443_21124521;chr2L_21125347_21125439 12.06 7.41 8.70 26.53 13.79 16.67 7.89 11.48 14.71 7.41 11.76 26.53 17.65 15.15 11.63 6.56 6.90 5.71 13.51 7.46 0.00 22.22 13.04 14.63 16.67 18.75 15.09 21.43 0.00 14.29 16.28 15.38 9.68 13.64 10.71 21.88 9.09 6.67 12.77 12.77 13.33 9.52 9.68 15.38 21.05 12.12 10.53 9.68 10.42 12.00 11.11 17.24 0.00 NA 9.52 14.29 9.09 8.33 K intron_retention CG7207 chr3L - chr3L_8280858_8280927 chr3L_8280857_8280858;chr3L_8280927_8280928 chr3L_8280709_8280857;chr3L_8280928_8281320 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 1.83 1.69 2.04 0.60 1.25 0.00 0.00 3.14 2.30 0.00 0.98 1.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.61 0.00 1.82 0.00 0.00 0.00 1.43 1.43 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 1.57 0.55 K jcn_only_AA dmondo,I_chr2L_21289375_21289461,I_chr2L_21301528_21308287,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579 chr2L - chr2L_21289375_21289461 chr2L_21289405_21289461 chr2L_21289462_21289548;chr2L_21289275_21289374 100.00 100.00 100.00 99.24 100.00 98.78 99.31 100.00 100.00 100.00 100.00 100.00 99.05 98.81 100.00 99.33 100.00 98.85 100.00 100.00 100.00 99.29 99.41 100.00 100.00 100.00 100.00 100.00 98.00 98.90 99.03 100.00 100.00 100.00 97.83 100.00 98.26 97.50 99.14 100.00 100.00 99.50 100.00 100.00 100.00 100.00 98.96 100.00 100.00 98.98 100.00 100.00 100.00 97.10 99.11 100.00 99.09 99.14 K alternative_acceptor hyx,RI_chr3R_4867356_4867447 chr3R + chr3R_4867356_4867447 chr3R_4867356_4867422 chr3R_4867256_4867355;chr3R_4867448_4867547 100.00 100.00 96.30 100.00 100.00 100.00 100.00 97.44 97.73 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 96.15 100.00 96.77 93.55 100.00 96.00 96.43 96.88 96.30 100.00 97.50 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 97.37 95.45 100.00 95.65 100.00 97.30 100.00 97.37 K alternative_acceptor Eps-15,I_chr2R_20660319_20660496 chr2R - chr2R_20657207_20659247 chr2R_20657585_20659247 chr2R_20659248_20659313;chr2R_20656942_20657206 95.80 96.67 90.41 93.91 95.65 92.86 94.92 95.06 96.18 93.44 100.00 100.00 89.74 98.04 98.51 91.07 95.92 94.44 92.31 95.80 96.23 100.00 96.85 95.19 98.46 94.12 98.82 96.30 95.31 96.58 94.29 95.24 96.15 95.35 95.18 97.67 96.48 94.19 96.95 96.02 96.30 94.93 97.78 95.74 94.97 96.03 98.96 95.24 91.96 95.45 95.92 92.31 96.55 98.90 95.95 90.11 96.58 94.85 K intron_retention mys,I_chrX_7958795_7961094 chrX + chrX_7960216_7961094 chrX_7960215_7960216;chrX_7961094_7961095 chrX_7960131_7960215;chrX_7961095_7961194 10.58 5.00 10.53 20.83 8.89 8.11 29.03 15.29 7.86 NA 12.50 22.86 13.04 6.58 10.00 13.51 5.21 12.90 13.58 7.76 9.09 10.34 13.33 13.04 19.05 10.77 10.87 NA NA 17.95 8.57 NA 5.26 11.76 10.00 16.67 6.12 13.04 7.14 10.53 NA 10.58 11.63 4.35 NA 15.38 8.00 26.67 17.81 20.00 7.69 5.13 NA 0.00 9.23 12.00 0.00 NA K intron_retention CG34123,I_chr2R_11159045_11159622,RI_chr2R_11160894_11162043,I_chr2R_11167854_11168411 chr2R - chr2R_11154968_11155310 chr2R_11154967_11154968;chr2R_11155310_11155311 chr2R_11154735_11154967;chr2R_11155311_11155321 30.77 NA NA NA NA NA NA NA 30.77 NA NA 46.15 NA NA NA NA NA NA NA NA NA 18.42 NA NA NA NA 60.00 NA NA NA NA NA NA NA NA 27.78 NA NA NA NA NA NA NA NA 18.75 NA NA 42.86 NA NA NA NA NA NA NA NA NA NA K intron_retention slmb,I_chr3R_16951107_16953048 chr3R - chr3R_16946692_16946751 chr3R_16946691_16946692;chr3R_16946751_16946752 chr3R_16946556_16946691;chr3R_16946752_16946941 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor I_chr3L_7374787_7375310,smid,I_chr3L_7375166_7375310,I_chr3L_7375435_7375508 chr3L + chr3L_7375112_7375310;chr3L_7375166_7375310 chr3L_7375255_7375310 chr3L_7375311_7375410;chr3L_7375066_7375111 0.00 2.17 0.00 1.92 0.00 0.00 1.61 0.00 0.00 0.00 8.33 2.04 0.00 2.13 1.96 1.03 4.17 0.00 0.00 1.41 0.00 0.00 0.00 1.61 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 4.17 0.00 1.94 0.00 2.74 0.00 0.96 0.00 0.00 0.00 2.99 2.22 2.27 0.00 1.27 2.44 0.00 0.00 0.00 3.51 0.00 K intron_retention Vha26,I_chr3R_1417553_1417709 chr3R + chr3R_1417553_1417650 chr3R_1417552_1417553;chr3R_1417650_1417651 chr3R_1417478_1417552;chr3R_1417651_1417760 1.35 0.00 1.28 1.12 0.00 0.00 2.04 0.93 1.35 3.45 0.00 1.13 0.00 1.35 0.00 1.13 0.00 0.00 0.00 1.26 0.00 0.00 2.97 3.30 1.30 2.29 8.54 2.44 2.74 3.30 2.30 2.56 3.28 0.95 0.00 11.86 1.75 0.00 1.05 3.39 7.25 1.61 0.00 3.00 0.00 1.79 0.00 3.16 1.62 1.23 3.28 2.11 2.56 2.94 0.93 2.60 0.00 1.46 K intron_retention Spargel,RI_chr3R_252723_254271,noncoding_14534 chr3R - chr3R_249596_249654 chr3R_249595_249596;chr3R_249654_249655 chr3R_249450_249595;chr3R_249655_251486 0.00 0.00 5.26 3.88 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 6.52 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 K jcn_only_AD CG4365 chr3L + chr3L_20792089_20792242;chr3L_20791819_20792242;chr3L_20792100_20792242;chr3L_20792077_20792242 chr3L_20791960_20792242 chr3L_20792243_20793181;chr3L_20791802_20791818 1.30 0.00 3.57 11.11 NA NA 0.00 4.76 4.48 NA 2.44 0.00 NA 0.00 0.00 3.23 4.17 0.00 0.00 1.30 0.00 0.00 7.41 0.00 NA 6.90 10.71 4.35 NA NA 3.85 NA 3.45 0.00 NA NA 0.00 0.00 4.35 3.57 NA 3.64 0.00 0.00 0.00 0.00 0.00 4.00 0.00 6.67 0.00 NA 4.88 4.35 3.33 2.86 0.00 0.00 K intron_retention CG1718 chrX - chrX_21170637_21171177 chrX_21170636_21170637;chrX_21171177_21171178 chrX_21170591_21170636;chrX_21171178_21171339 12.50 NA NA NA NA NA NA 16.67 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA K alternative_donor ftz-f1,I_chr3L_18790575_18790636 chr3L - chr3L_18746544_18747413 chr3L_18746544_18746932 chr3L_18746285_18746543;chr3L_18747414_18747612 5.56 3.57 3.85 1.69 0.00 3.70 7.69 2.56 3.33 11.76 9.09 4.26 3.45 0.00 5.56 11.43 0.00 3.70 2.70 1.82 4.35 16.33 7.32 9.09 21.05 3.57 11.43 12.50 25.00 8.33 3.85 4.35 9.09 2.27 5.88 21.88 12.12 4.00 6.82 6.35 18.75 4.35 5.00 10.34 8.33 10.00 6.67 12.20 4.08 8.33 7.32 10.53 5.56 0.00 2.70 5.26 0.00 3.85 K jcn_only_AA CG11504 chr3R + chr3R_25823929_25823996 chr3R_25823929_25823992 chr3R_25823519_25823928;chr3R_25823997_25825464 97.80 100.00 NA 95.45 NA NA NA 100.00 97.73 NA 100.00 97.50 100.00 NA NA 100.00 NA NA NA 97.87 NA NA 100.00 100.00 NA NA 96.55 100.00 85.19 NA NA NA 96.97 NA NA 88.46 98.11 97.14 96.08 100.00 NA 96.97 NA 100.00 100.00 93.55 95.83 100.00 91.89 95.65 100.00 NA 96.55 100.00 NA 95.65 96.97 100.00 K intron_retention RpS24,I_chr2R_18528611_18528714,E_chr2R_18528611_18528868 chr2R - chr2R_18528611_18528858 chr2R_18528610_18528611;chr2R_18528858_18528859 chr2R_18528511_18528610;chr2R_18528859_18528927 0.05 0.00 0.06 0.03 0.05 0.00 0.07 0.07 0.05 0.00 0.00 0.12 0.03 0.00 0.09 0.02 0.00 0.00 0.00 0.06 0.00 0.13 0.00 0.00 0.06 0.09 0.23 0.75 0.35 0.25 0.21 0.09 0.00 0.06 0.00 0.00 0.09 0.00 0.08 0.18 0.00 0.05 0.03 0.00 0.00 0.06 0.14 0.00 0.11 0.13 0.00 0.00 0.08 0.11 0.05 0.11 0.08 0.26 K intron_retention Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8107001_8107065 chr2L_8107000_8107001;chr2L_8107065_8107066 chr2L_8106840_8107000;chr2L_8107066_8107173 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8443558_8455071,chr3L_8455189_8456103 chr3L_8443558_8444874,chr3L_8445229_8456103 chr3L_8455072_8455188 chr3L_8444875_8445228 chr3L_8443524_8443557;chr3L_8456104_8456203 25.00 NA NA NA NA NA 20.00 NA 16.67 75.00 NA NA NA NA NA 28.57 NA NA NA NA NA NA NA NA NA 25.00 NA NA 16.67 NA NA NA NA NA NA 50.00 NA NA NA 20.00 NA 25.00 50.00 NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA 25.00 K intron_retention CG15097,I_chr2R_14712075_14712152,I_chr2R_14713403_14713523 chr2R - chr2R_14712075_14712208 chr2R_14712074_14712075;chr2R_14712208_14712209 chr2R_14711975_14712074;chr2R_14712209_14712252 6.67 NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 11.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG32982,I_chr2L_9127467_9148754,EF_chr2L_9135385_9148841,F_chr2L_9149162_9154658 chr2L + chr2L_9162709_9163140;chr2L_9162709_9163294 chr2L_9162709_9163143 chr2L_9162363_9162708;chr2L_9163295_9163398 5.00 4.69 3.85 5.71 2.56 3.70 6.12 6.90 8.99 6.82 0.00 0.00 NA 2.63 6.98 3.45 3.85 3.70 0.00 3.33 3.85 5.76 3.85 8.33 4.88 8.00 7.23 6.67 4.55 3.33 2.44 6.00 7.02 9.09 2.13 5.45 7.84 4.17 4.76 6.25 5.41 6.17 5.00 3.94 2.22 5.75 7.87 8.57 8.96 6.49 5.32 1.96 9.68 1.32 5.00 3.30 8.22 3.75 K jcn_only_AD CEI_chr3R_10927927_10937314,CG6934 chr3R - chr3R_10937912_10957499;chr3R_10937912_10957457 chr3R_10937912_10957329 chr3R_10937315_10937911;chr3R_10957500_10957513 95.65 100.00 87.50 93.94 NA 100.00 NA 89.36 98.53 NA 95.65 94.64 NA 100.00 96.97 100.00 NA 97.37 97.78 92.45 94.87 86.96 98.28 97.67 96.00 NA 100.00 97.73 91.67 93.33 100.00 NA 90.00 96.43 97.30 94.12 95.16 94.87 95.08 94.94 100.00 95.65 100.00 94.81 NA 97.87 95.00 91.11 93.62 NA 94.83 95.24 95.65 NA 96.00 88.46 NA 96.97 K jcn_only_AD CG9795,I_chr3R_151216_151418 chr3R + chr3R_151216_151418;chr3R_151180_151418;chr3R_151212_151418 chr3R_151184_151418 chr3R_151419_151518;chr3R_151116_151179 0.00 NA 8.70 4.17 0.00 0.00 4.35 0.00 1.75 0.00 NA 0.00 NA NA NA 2.94 0.00 0.00 0.00 0.00 NA 0.00 2.33 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA 2.44 NA 0.00 7.41 4.35 3.33 3.85 NA 2.44 0.00 0.00 4.00 4.00 3.12 NA 0.00 1.43 6.25 0.00 NA NA 0.00 3.85 0.00 0.00 K jcn_only_AA Nedd4,I_chr3L_17534504_17535990,I_chr3L_17535485_17536604,I_chr3L_17536813_17536863 chr3L + chr3L_17535485_17535689 chr3L_17535485_17535650 chr3L_17535417_17535484;chr3L_17535690_17535734 86.66 NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG4452 chr3L + chr3L_9361114_9361200 chr3L_9361118_9361200 chr3L_9361201_9361314;chr3L_9361049_9361113 0.00 0.00 1.79 2.47 0.00 2.86 0.00 3.08 0.90 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 4.48 3.00 0.00 0.00 3.23 1.54 3.64 0.00 0.00 3.03 0.00 0.00 0.00 1.79 0.00 0.00 1.27 2.22 1.23 0.00 1.16 0.00 1.22 2.08 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 1.39 0.00 1.72 0.00 K intron_retention nes chr3L - chr3L_19253331_19253745 chr3L_19253330_19253331;chr3L_19253745_19253746 chr3L_19253215_19253330;chr3L_19253746_19253779 58.12 NA NA NA 70.00 NA 60.00 50.00 54.55 NA NA 64.29 NA NA 53.85 77.78 NA NA 70.00 52.94 NA NA NA NA 60.00 NA 72.73 NA NA NA NA NA NA 50.00 NA NA NA NA NA 70.00 NA 53.33 NA NA NA NA NA NA 56.25 NA NA NA NA NA 46.15 NA NA NA K intron_retention CG12547 chr2R - chr2R_674581_674642 chr2R_674580_674581;chr2R_674642_674643 chr2R_674471_674580;chr2R_674643_675850 10.39 NA NA NA NA NA 13.64 6.67 16.67 NA NA 4.76 NA NA NA 50.00 11.11 NA 17.39 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 5.56 NA NA NA NA NA 6.67 NA 9.68 5.56 NA NA NA NA NA 20.00 NA NA NA NA NA 13.33 NA NA NA K intron_retention CG7044 chr3R - chr3R_16927101_16927170 chr3R_16927100_16927101;chr3R_16927170_16927171 chr3R_16926917_16927100;chr3R_16927171_16927520 0.00 7.50 0.00 1.96 0.00 0.00 3.90 0.00 2.47 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 8.57 0.00 4.62 0.00 20.51 0.00 4.76 0.00 3.45 0.00 0.00 2.94 1.67 2.94 4.26 2.13 10.53 4.17 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K alternative_acceptor Sec16,I_chrX_12501913_12502010,I_chrX_12502899_12502973 chrX + chrX_12498831_12498896 chrX_12498831_12498893 chrX_12498681_12498830;chrX_12498897_12499421 85.71 78.95 77.78 85.19 70.59 83.33 84.62 79.31 94.44 91.67 92.86 96.30 69.23 87.50 76.47 72.73 87.50 85.71 77.78 90.70 88.89 86.21 81.08 92.00 80.00 72.22 90.91 91.67 94.44 94.44 82.61 92.86 85.19 67.65 73.33 94.74 90.24 60.00 94.74 79.17 87.50 78.12 71.43 75.86 93.33 83.33 88.24 94.12 80.00 100.00 95.00 72.22 90.00 88.89 81.82 62.50 92.31 100.00 K intron_retention D1,RI_chr3R_5065631_5065691,I_chr3R_5065631_5065695,I_chr3R_5065631_5065697 chr3R - chr3R_5065631_5065697 chr3R_5065630_5065631;chr3R_5065697_5065698 chr3R_5065531_5065630;chr3R_5065698_5065704 98.72 98.65 97.94 99.31 98.61 96.97 98.94 99.33 97.97 100.00 98.08 98.21 98.97 98.86 99.15 98.68 98.28 98.67 97.20 97.78 95.71 100.00 100.00 99.06 100.00 99.10 98.68 100.00 94.79 97.62 99.03 99.08 100.00 97.04 98.72 98.68 100.00 98.31 98.68 99.47 99.28 98.86 98.77 98.59 99.17 99.46 98.89 98.12 99.06 98.81 98.73 98.57 98.67 98.61 96.97 98.90 98.68 97.12 K intron_retention I_chr3L_834336_834491,CG13887,Gr61a chr3L + chr3L_837946_838048 chr3L_837945_837946;chr3L_838048_838049 chr3L_837877_837945;chr3L_838049_838624 20.79 14.29 22.45 25.22 7.50 20.83 22.67 20.31 13.43 14.29 20.93 23.91 21.05 26.53 31.25 10.95 22.22 20.45 20.75 13.57 30.00 16.18 29.41 29.17 54.90 59.70 57.14 23.08 12.50 14.29 28.79 10.77 13.24 15.38 30.43 47.83 14.71 22.86 29.17 13.21 16.81 12.73 17.50 14.93 7.03 10.19 40.74 6.96 11.81 29.27 43.59 20.00 30.77 NA 23.26 25.00 17.54 7.34 K alternative_acceptor cact,RI_chr2L_16314859_16315116,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16324901_16326020 chr2L_16325055_16326020 chr2L_16326021_16326108;chr2L_16324801_16324900 100.00 98.51 100.00 98.51 98.00 100.00 100.00 98.73 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 97.92 99.08 100.00 100.00 98.97 98.95 100.00 100.00 98.65 97.30 100.00 100.00 100.00 97.73 100.00 98.73 100.00 100.00 98.72 100.00 100.00 100.00 97.73 98.37 100.00 98.59 100.00 100.00 98.55 100.00 98.94 98.55 100.00 95.83 100.00 100.00 98.11 100.00 97.06 100.00 K intron_retention CG1637,I_chrX_10767807_10771447 chrX - chrX_10769204_10769273 chrX_10769203_10769204;chrX_10769273_10769274 chrX_10767933_10769203;chrX_10769274_10769620 6.67 NA NA NA NA NA NA NA 9.09 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 7.69 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Cyp1,RI_chrX_16212641_16213159,RI_chrX_16212641_16213308,I_chrX_16212641_16213680,I_chrX_16212641_16213960 chrX - chrX_16212641_16214111 chrX_16212640_16212641;chrX_16214111_16214112 chrX_16212541_16212640;chrX_16214112_16214235 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.04 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10260 chrX + chrX_2525314_2525397 chrX_2525313_2525314;chrX_2525397_2525398 chrX_2523509_2525313;chrX_2525398_2526314 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 2.70 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor exd chrX + chrX_15888639_15888717 chrX_15888648_15888717 chrX_15888718_15890040;chrX_15888380_15888638 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.51 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.91 0.00 K intron_retention Rnp4F,I_chrX_5214525_5214591 chrX - chrX_5216487_5216663 chrX_5216486_5216487;chrX_5216663_5216664 chrX_5216423_5216486;chrX_5216664_5216731 40.00 NA NA NA NA NA NA 52.94 55.56 NA 40.00 33.33 NA NA NA 30.77 NA NA 38.46 42.11 NA NA NA NA NA NA NA NA NA NA NA NA NA 56.25 NA NA NA NA 38.46 NA NA 69.23 NA 36.36 NA NA NA NA 40.00 NA NA NA NA NA 50.00 NA NA NA K intron_retention CG9346 chr2R + chr2R_16901661_16901714 chr2R_16901660_16901661;chr2R_16901714_16901715 chr2R_16901418_16901660;chr2R_16901715_16901898 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA NA NA 4.55 NA NA NA K alternative_donor Hcs,I_chr3R_1303481_1304607 chr3R + chr3R_1302041_1302262 chr3R_1302185_1302262 chr3R_1302263_1303269;chr3R_1302036_1302040 86.60 NA NA 83.33 NA NA NA 87.50 90.91 NA NA 81.82 NA 83.33 NA NA NA NA 100.00 100.00 NA NA 62.50 80.00 83.33 NA 83.33 NA NA NA NA NA 83.33 87.50 100.00 NA 71.43 NA 55.56 100.00 NA 85.71 NA 83.33 NA NA NA 87.50 87.50 NA 100.00 NA NA NA 87.50 NA NA 100.00 K intron_retention gbb chr2R + chr2R_19739125_19739205 chr2R_19739124_19739125;chr2R_19739205_19739206 chr2R_19739106_19739124;chr2R_19739206_19740772 97.67 98.90 92.31 91.14 97.67 97.44 84.31 94.52 90.85 100.00 93.75 97.03 92.68 90.91 98.31 98.86 95.74 89.13 91.18 96.05 92.16 96.26 100.00 100.00 100.00 100.00 99.04 98.99 100.00 96.92 98.48 96.61 89.04 98.68 97.56 98.31 100.00 99.01 98.81 98.82 97.50 96.15 91.89 100.00 92.73 98.85 100.00 97.06 91.96 98.68 100.00 100.00 100.00 100.00 96.77 100.00 100.00 93.33 K jcn_only_AD CG5694,RI_chr2L_10229956_10231366 chr2L - chr2L_10229956_10231282;chr2L_10229956_10231394 chr2L_10229956_10231538 chr2L_10229856_10229955;chr2L_10231539_10231648 41.86 NA NA 30.00 NA NA 29.03 52.38 37.10 NA NA 41.67 59.26 42.86 NA 36.36 NA 36.36 62.86 37.93 NA NA 46.15 52.38 NA NA NA NA NA NA 45.00 NA NA 41.86 NA NA NA NA NA 31.03 NA 50.00 NA NA NA NA NA 34.48 47.17 NA NA NA NA NA NA NA NA NA K alternative_donor gw,RI_chr4_679135_679703,I_chr4_679135_680299,RI_chr4_679135_680693,I_chr4_679135_681047,I_chr4_679135_681671 chr4 - chr4_679135_681054;chr4_679135_681206 chr4_679135_681128 chr4_679035_679134;chr4_681207_681208 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 K intron_retention CG4199,I_chrX_1962457_1963822,I_chrX_1962457_1964222 chrX - chrX_1962457_1965392 chrX_1962456_1962457;chrX_1965392_1965393 chrX_1962357_1962456;chrX_1965393_1965613 1.13 0.00 1.57 4.69 1.45 0.76 1.04 2.27 0.89 0.00 0.98 1.03 0.00 0.00 1.48 1.65 0.00 0.00 0.00 2.05 0.00 0.58 0.45 1.30 0.86 0.69 1.74 3.33 2.68 1.67 3.29 5.26 1.57 1.46 1.68 1.61 1.16 0.00 0.40 1.05 2.60 1.03 0.00 1.76 1.90 0.00 1.24 1.16 1.18 1.31 0.87 0.00 0.94 1.09 1.13 0.00 1.38 1.25 K intron_retention CG9044 chr2L + chr2L_5952628_5953415 chr2L_5952627_5952628;chr2L_5953415_5953416 chr2L_5952445_5952627;chr2L_5953416_5954477 6.67 NA NA 13.04 NA NA 0.00 16.67 5.26 NA NA 0.00 NA NA 0.00 NA NA NA 6.67 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA 6.67 NA 8.33 NA NA NA NA NA NA 15.00 NA NA NA NA NA 12.50 NA NA NA K multi_cassette bl,I_chr2R_16481586_16483061 chr2R + chr2R_16483320_16492200 chr2R_16483320_16485957;chr2R_16486031_16486103;chr2R_16486200_16492200 chr2R_16485958_16486030;chr2R_16486104_16486199 chr2R_16483263_16483319;chr2R_16492201_16493124 100.00 100.00 97.78 88.31 100.00 100.00 98.28 100.00 98.75 93.94 100.00 100.00 100.00 97.37 97.78 100.00 100.00 100.00 100.00 99.17 100.00 100.00 100.00 100.00 100.00 100.00 97.92 93.10 85.42 97.30 100.00 97.37 95.24 98.57 100.00 100.00 100.00 100.00 98.33 100.00 97.83 98.91 100.00 97.56 98.15 95.38 100.00 96.10 100.00 100.00 100.00 100.00 100.00 100.00 97.87 97.73 95.92 98.78 K mutually_exclusive CG6767,I_chr3L_9679564_9680329,CREI_chr3L_9679564_9687332,I_chr3L_9680354_9682364,I_chr3L_9682549_9689638,I_chr3L_9682607_9687332,RE_chr3L_9679576_9682364,RI_chr3L_9679579_9682364 chr3L - chr3L_9679564_9687332,chr3L_9687559_9689638 chr3L_9679564_9682364,chr3L_9682549_9689638 chr3L_9687333_9687558 chr3L_9682365_9682548 chr3L_9679479_9679563;chr3L_9689639_9689685 14.29 NA NA 57.14 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA 25.00 25.00 0.00 NA NA 0.00 0.00 NA 33.33 0.00 0.00 14.29 37.50 NA NA NA NA NA NA NA 33.33 NA 0.00 NA NA 0.00 NA 20.00 NA 50.00 K intron_retention Mes-4 chr3R - chr3R_23763060_23763152 chr3R_23763059_23763060;chr3R_23763152_23763153 chr3R_23761784_23763059;chr3R_23763153_23763562 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.89 0.00 0.00 1.72 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Aldh-III,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3356731_3356864 chr2R_3356730_3356731;chr2R_3356864_3356865 chr2R_3356615_3356730;chr2R_3356865_3357018 53.06 53.06 43.10 62.86 47.17 63.16 72.73 59.41 53.76 68.75 81.25 59.72 62.79 54.17 62.26 42.03 56.82 69.57 55.38 45.08 78.12 41.18 51.11 54.76 36.84 30.77 66.67 63.64 38.10 55.56 56.14 45.45 55.56 56.79 76.47 94.44 47.17 47.22 48.21 52.17 24.24 59.26 73.53 50.00 37.50 44.44 41.94 70.83 51.95 41.38 51.22 45.45 47.06 43.75 54.24 51.35 51.72 52.63 K alternative_donor RpL27A,E_chr2L_4457411_4457977,I_chr2L_4458058_4458120 chr2L - chr2L_4458058_4458288;chr2L_4458058_4458274;chr2L_4458058_4458162 chr2L_4458058_4458140 chr2L_4457978_4458057;chr2L_4458289_4458357 1.60 0.59 0.00 0.29 0.36 0.35 0.45 0.11 0.61 1.55 0.00 0.32 0.58 4.23 0.48 0.45 0.00 0.00 0.22 0.59 0.00 3.64 3.94 3.60 2.56 0.91 2.97 5.26 3.82 3.33 2.16 1.74 1.52 0.13 2.78 4.12 2.26 2.48 2.27 4.89 3.03 0.42 0.31 2.42 0.44 2.90 1.97 2.49 0.58 2.19 2.86 2.75 1.52 3.96 0.20 3.23 1.60 1.75 K alternative_donor achi,I_chr2R_8401767_8401934 chr2R - chr2R_8401767_8402280;chr2R_8401767_8401934 chr2R_8401767_8401848 chr2R_8401667_8401766;chr2R_8402281_8402519 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 3.57 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention NC2alpha chr2R + chr2R_17557794_17558000 chr2R_17557793_17557794;chr2R_17558000_17558001 chr2R_17557707_17557793;chr2R_17558001_17559098 0.00 0.00 0.00 2.56 0.00 7.14 2.94 0.00 0.00 NA NA 2.50 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 9.52 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 4.35 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 K intron_retention CG5630 chr3R + chr3R_16751825_16751886 chr3R_16751824_16751825;chr3R_16751886_16751887 chr3R_16751644_16751824;chr3R_16751887_16751974 1.72 1.88 2.16 3.12 0.93 0.00 2.97 2.96 2.46 3.33 1.77 0.49 3.17 1.38 1.12 0.00 0.00 0.68 0.62 2.49 1.56 7.89 3.21 0.00 7.69 4.00 2.84 0.00 4.69 7.14 7.22 0.00 0.00 1.25 0.00 14.67 2.27 1.61 2.03 2.29 4.62 1.10 0.00 1.72 0.00 1.23 0.00 4.17 1.45 2.15 2.13 2.88 0.00 1.61 2.16 1.69 0.00 0.00 K intron_retention CG5789,I_chr3R_20367337_20369421 chr3R - chr3R_20366790_20366841 chr3R_20366789_20366790;chr3R_20366841_20366842 chr3R_20366605_20366789;chr3R_20366842_20366973 0.00 0.00 0.00 4.88 0.00 0.00 0.00 2.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 3.23 0.00 NA NA 0.00 0.00 NA 0.00 3.64 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 3.39 NA 0.00 0.00 NA NA 0.00 NA NA NA K alternative_donor RhoGAPp190,I_chrX_17544272_17544863,I_chrX_17546225_17546531 chrX - chrX_17544272_17546123;chrX_17544272_17546421 chrX_17544272_17546531 chrX_17544172_17544271;chrX_17546532_17546535 60.00 65.22 68.97 60.00 77.78 55.17 60.00 48.89 65.33 78.95 74.07 54.84 58.62 65.38 65.79 59.38 62.50 55.56 40.91 45.90 66.67 67.86 31.82 12.50 44.44 53.12 35.71 87.50 80.00 58.33 64.71 25.00 71.79 65.38 56.25 37.50 36.36 33.33 33.33 73.33 70.00 62.30 60.00 65.38 66.67 69.23 0.00 78.57 63.64 25.00 31.25 26.67 70.00 0.00 51.43 28.57 NA 73.68 K multi_cassette mud chrX + chrX_14148322_14150517 chrX_14148322_14149491;chrX_14149968_14150033;chrX_14150134_14150517 chrX_14149492_14149967;chrX_14150034_14150133 chrX_14147213_14148321;chrX_14150518_14150790 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 98.25 96.97 100.00 96.77 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 K cassette scro chr3LHet + chr3LHet_224333_240692 chr3LHet_224333_231739;chr3LHet_231827_240692 chr3LHet_231740_231826 chr3LHet_224237_224332;chr3LHet_240693_240954 64.29 66.67 90.00 82.35 60.00 75.00 34.62 69.57 75.00 NA NA 56.52 75.00 56.25 60.00 68.75 71.43 63.64 92.31 70.00 83.33 55.56 41.67 45.45 44.44 53.85 46.15 NA NA 66.67 75.00 NA NA 72.73 NA NA 54.55 50.00 50.00 66.67 50.00 70.83 46.15 69.23 60.00 66.67 66.67 62.50 69.23 52.63 75.00 63.64 53.33 60.00 86.67 66.67 43.33 64.29 K jcn_only_AA CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_243585_244182;chr4_243673_244182;chr4_243639_244182 chr4_243657_244182 chr4_244183_244282;chr4_243557_243584 1.20 0.00 0.00 1.30 2.56 0.00 0.00 1.98 0.74 NA NA 3.26 1.49 0.00 0.00 1.67 4.35 NA 1.49 2.15 0.00 6.06 3.57 2.94 NA 0.00 0.00 NA NA 0.00 3.09 5.00 NA 0.98 4.00 NA NA NA NA 0.00 NA 1.20 1.96 3.70 NA 0.00 0.00 NA 0.79 0.00 3.51 NA NA 0.00 1.79 0.00 0.00 4.55 K jcn_only_AA dNAT1,CG13319,RI_chr2R_8812301_8816468 chr2R + chr2R_8803570_8805499 chr2R_8803570_8805247 chr2R_8803506_8803569 0.67 1.04 0.00 0.58 0.72 0.00 1.36 0.00 0.56 1.67 2.26 0.28 0.00 0.49 0.00 0.24 1.08 0.00 1.81 1.06 0.56 0.00 0.00 0.00 2.00 0.55 0.00 2.08 2.00 0.00 0.41 2.63 0.00 0.60 0.00 1.96 1.60 1.89 0.00 1.64 0.00 0.00 1.18 1.22 2.00 2.70 1.18 6.67 0.94 2.99 1.52 1.01 0.00 0.00 0.67 2.90 0.00 6.12 K alternative_acceptor Zyx102EF,I_chr4_1079131_1080044,I_chr4_1079946_1080044,RI_chr4_1079959_1080044,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1079915_1080044;chr4_1079959_1080044 chr4_1079978_1080044 chr4_1080045_1080072;chr4_1079859_1079914 40.82 36.84 19.05 40.82 16.67 43.75 72.50 38.46 39.66 NA 41.18 41.03 45.83 47.62 25.00 29.31 48.00 31.58 42.86 37.21 33.33 50.00 33.33 50.00 53.33 38.89 43.75 20.00 NA 36.36 36.00 27.27 33.33 38.00 41.67 70.59 50.00 60.00 50.00 45.45 33.33 42.22 33.33 35.71 30.00 50.00 50.00 50.00 45.10 81.82 50.00 53.33 33.33 87.50 40.74 30.77 27.78 23.81 K intron_retention NtR chr2R + chr2R_18017436_18017495 chr2R_18017435_18017436;chr2R_18017495_18017496 chr2R_18017269_18017435;chr2R_18017496_18017695 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.41 5.88 0.00 0.00 0.00 NA 13.04 NA 0.00 NA 0.00 0.00 NA 7.14 2.44 NA 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11710 chrX - chrX_20299022_20299077 chrX_20299021_20299022;chrX_20299077_20299078 chrX_20298827_20299021;chrX_20299078_20299199 0.00 3.45 0.00 11.43 0.00 0.00 0.00 0.00 2.13 4.35 0.00 2.22 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.22 2.44 4.55 4.35 0.00 9.30 6.45 6.10 0.00 0.00 0.00 11.76 0.00 3.57 5.71 0.00 0.00 5.88 0.00 4.44 0.00 NA 11.43 4.35 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 3.57 1.82 K multi_cassette CG33558,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,I_chr2R_2820149_2820628,EI_chr2R_2820947_2821570,CREI_chr2R_2832933_2850384 chr2R - chr2R_2817876_2821570 chr2R_2817876_2818567;chr2R_2820203_2820628;chr2R_2821433_2821570 chr2R_2818568_2820202;chr2R_2820629_2821432 chr2R_2817851_2817875;chr2R_2821571_2821639 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 K alternative_donor BM-40-SPARC,I_chr3R_22696095_22696231,I_chr3R_22696095_22696291,I_chr3R_22696095_22697413 chr3R - chr3R_22696095_22697647;chr3R_22696095_22696291;chr3R_22696095_22696231 chr3R_22696095_22697413 chr3R_22695995_22696094;chr3R_22697648_22697767 0.35 0.30 0.32 0.48 0.30 0.37 0.51 0.45 0.33 0.31 0.28 0.48 0.37 0.39 0.50 0.41 0.50 0.35 0.33 0.48 0.27 0.11 0.34 0.28 0.51 0.39 0.35 0.17 0.84 0.29 0.73 0.37 0.18 0.54 0.33 0.80 0.16 0.23 0.19 0.55 0.41 0.40 0.43 0.20 0.21 0.38 0.27 1.04 0.49 0.17 0.48 0.33 0.17 0.28 0.59 0.32 0.14 0.24 K intron_retention Fhos,CE_chr3L_8759730_8775647,I_chr3L_8779538_8779726 chr3L + chr3L_8782618_8783269 chr3L_8782617_8782618;chr3L_8783269_8783270 chr3L_8782571_8782617;chr3L_8783270_8783608 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 0.00 NA NA 0.00 4.17 0.00 0.00 NA NA 0.00 NA NA NA NA 7.69 0.00 0.00 NA 0.00 NA 0.00 NA NA NA 5.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA K alternative_donor CG2201,I_chr2L_21618111_21618314 chr2L - chr2L_21618111_21618708 chr2L_21618111_21618495 chr2L_21618011_21618110;chr2L_21618709_21618749 85.71 100.00 85.71 91.67 NA 75.00 90.91 91.67 85.00 NA 83.33 84.62 71.43 66.67 66.67 92.86 87.50 NA 85.71 80.00 NA 88.89 85.71 80.00 NA NA NA NA NA NA 100.00 NA 80.00 100.00 NA NA 80.00 NA NA 100.00 85.71 76.92 83.33 90.00 83.33 100.00 87.50 85.71 87.50 66.67 100.00 66.67 NA 100.00 83.33 85.71 87.50 83.33 K intron_retention EI_chr2L_13164741_13164824,Sfmbt chr2L - chr2L_13170785_13171312 chr2L_13170784_13170785;chr2L_13171312_13171313 chr2L_13169657_13170784;chr2L_13171313_13171365 0.00 0.00 NA 0.00 0.00 NA 13.79 0.00 3.39 NA 0.00 6.67 NA 5.56 0.00 0.00 0.00 0.00 0.00 6.38 0.00 NA 8.33 2.78 NA 0.00 5.56 NA 10.53 10.53 NA NA 0.00 0.00 NA 0.00 0.00 6.67 3.23 0.00 6.67 8.82 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 5.88 K intron_retention Ect4,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8100050_8101385 chr3L_8100049_8100050;chr3L_8101385_8101386 chr3L_8099116_8100049;chr3L_8101386_8101485 86.84 86.84 92.86 98.88 90.91 87.50 96.30 94.79 82.28 74.07 96.15 64.71 100.00 82.61 90.70 94.74 91.43 97.67 92.86 85.88 91.18 67.11 80.33 80.43 88.57 92.11 85.25 93.10 73.44 94.59 87.27 74.47 81.08 88.61 82.05 78.79 68.42 81.82 87.50 85.14 91.07 89.53 92.86 83.72 81.03 71.43 70.97 81.82 89.01 94.87 76.92 88.89 62.50 76.67 93.33 76.74 75.00 70.83 K intron_retention Cg25C,I_chr2L_5029811_5029873 chr2L + chr2L_5029637_5030136 chr2L_5029636_5029637;chr2L_5030136_5030137 chr2L_5029620_5029636;chr2L_5030137_5030237 0.00 NA NA 11.76 NA NA NA 0.00 0.00 NA NA NA 15.38 NA NA NA NA 0.00 0.00 4.76 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 3.85 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 4.76 NA NA NA 7.14 NA 0.00 NA NA 0.00 K intron_retention slmb,I_chr3R_16951107_16953048 chr3R - chr3R_16946462_16946555 chr3R_16946461_16946462;chr3R_16946555_16946556 chr3R_16944973_16946461;chr3R_16946556_16946691 0.00 0.00 0.00 1.10 0.00 0.00 0.99 0.00 0.81 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ari-1,I_chrX_18026911_18026975 chrX - chrX_18027405_18027743 chrX_18027404_18027405;chrX_18027743_18027744 chrX_18027281_18027404;chrX_18027744_18028393 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG4078,I_chrX_5644813_5644881,I_chrX_5645012_5645067,F_chrX_5650884_5651894 chrX + chrX_5644638_5644881 chrX_5644813_5644881 chrX_5644882_5644981;chrX_5644495_5644637 44.44 44.44 33.33 62.50 22.22 40.00 70.00 55.00 46.88 NA 66.67 50.00 66.67 46.15 35.71 61.54 66.67 44.44 50.00 55.00 71.43 NA 33.33 25.00 66.67 43.75 57.14 60.00 57.14 33.33 60.00 44.44 42.86 61.54 30.00 NA 40.00 16.67 25.00 47.06 NA 38.46 60.00 50.00 40.00 36.36 60.00 66.67 52.17 29.41 40.00 44.44 43.75 37.50 41.18 26.32 41.67 66.67 K alternative_acceptor Elongin-C,I_chr2R_15332885_15333223,I_chr2R_15332885_15333260,I_chr2R_15332885_15333452,I_chr2R_15333309_15333432,I_chr2R_15336252_15338966 chr2R - chr2R_15332885_15333432 chr2R_15333309_15333432 chr2R_15333433_15333532;chr2R_15332785_15332884 0.57 0.50 0.47 1.02 0.73 0.53 1.15 0.62 0.82 0.94 0.68 0.30 1.26 1.20 0.45 1.18 0.71 0.53 0.50 0.74 0.70 2.20 0.48 0.40 0.00 0.51 0.43 0.64 0.59 0.00 0.90 0.00 0.00 0.78 0.58 0.00 0.42 0.57 0.35 0.80 0.36 0.85 0.70 0.45 0.44 0.31 0.43 0.51 0.96 0.83 0.88 1.52 0.58 0.46 0.44 0.77 0.41 0.40 K intron_retention CG9339,I_chr2L_20877678_20903015,I_chr2L_20882465_20889794,RE_chr2L_20903555_20916904,I_chr2L_20903560_20918638,I_chr2L_20922613_20922685 chr2L - chr2L_20882465_20903015 chr2L_20882464_20882465;chr2L_20903015_20903016 chr2L_20882365_20882464;chr2L_20903016_20903115 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.80 0.00 0.00 0.00 0.00 0.00 1.23 2.53 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 K alternative_donor RhoGAP71E,I_chr3L_15583097_15589765 chr3L + chr3L_15582166_15582458 chr3L_15582377_15582458 chr3L_15582459_15583096;chr3L_15581999_15582165 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 98.44 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.06 100.00 100.00 100.00 100.00 100.00 100.00 99.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_16982134_16983336;chr3R_16982134_16982890;chr3R_16982134_16983218;chr3R_16982134_16983159 chr3R_16982134_16983164 chr3R_16982126_16982133;chr3R_16983337_16983376 12.50 29.41 15.79 12.00 0.00 26.67 11.11 15.00 10.87 22.22 10.00 15.79 15.00 16.67 10.53 3.12 6.25 14.29 14.29 14.29 7.69 8.33 5.26 7.14 26.67 7.14 8.33 14.29 8.33 27.27 7.69 0.00 0.00 15.38 25.00 7.69 11.11 12.50 21.43 9.09 18.18 17.50 28.57 7.14 0.00 6.25 25.00 13.04 10.64 12.50 5.88 15.38 22.22 20.00 14.29 22.22 25.00 0.00 K cassette CG7766,I_chrX_8993495_8994545,I_chrX_8991338_8991387 chrX - chrX_8993495_8995128;chrX_8992447_8995128 chrX_8993495_8994545,chrX_8992447_8994545;chrX_8994691_8995128 chrX_8994546_8994690 chrX_8992117_8992446;chrX_8995129_8995452 15.69 23.08 17.24 10.26 19.44 17.02 15.19 14.67 14.41 13.95 22.22 20.00 6.52 14.29 15.87 12.00 22.73 20.37 20.31 18.63 18.18 4.72 29.76 25.00 16.67 9.80 19.48 6.67 16.09 8.79 12.35 11.90 8.61 13.54 13.85 9.09 21.52 28.85 8.47 8.47 2.27 15.84 12.77 22.83 12.99 13.08 24.00 5.10 21.51 12.90 21.52 15.69 28.21 25.64 12.50 16.13 32.14 11.71 K jcn_only_AD prel chr2R + chr2R_5311931_5312043 chr2R_5311966_5312043 chr2R_5312044_5312420;chr2R_5311837_5311930 96.70 97.65 95.95 98.84 93.65 94.12 96.91 96.39 96.99 98.00 96.15 98.28 96.83 97.78 97.75 98.57 98.36 95.59 95.71 98.28 91.84 98.53 94.83 96.90 95.89 96.92 98.06 98.57 89.87 94.44 95.08 93.62 90.41 96.70 95.52 98.53 100.00 93.00 95.00 97.56 100.00 98.41 92.86 98.70 98.55 96.20 97.50 95.35 95.76 95.96 95.38 96.67 96.23 98.51 93.42 97.40 98.72 91.67 K jcn_only_AA CG14712,CG10535,I_chr3R_7498847_7498975 chr3R + chr3R_7477297_7477357 chr3R_7477297_7477345 chr3R_7476710_7477296;chr3R_7477358_7478498 3.10 0.00 6.06 2.47 3.33 7.55 3.41 1.82 0.93 4.76 0.00 1.20 6.25 5.00 3.17 0.80 3.03 5.13 0.00 1.74 6.82 5.56 3.80 4.55 0.00 5.56 1.30 4.44 5.17 0.00 3.23 3.57 3.92 6.67 0.00 1.85 2.08 0.00 1.92 6.33 1.92 3.42 10.64 2.90 4.35 1.92 8.70 3.60 1.04 0.00 5.88 0.00 0.00 NA 8.51 0.00 0.00 0.00 K intron_retention Moca-cyp chr3R + chr3R_24168532_24168601 chr3R_24168531_24168532;chr3R_24168601_24168602 chr3R_24168405_24168531;chr3R_24168602_24168796 0.00 0.00 0.00 4.72 0.00 2.35 0.00 0.91 0.00 0.00 0.00 0.83 1.85 1.49 0.00 0.97 0.00 0.00 0.00 0.65 0.00 0.98 0.00 2.27 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.70 0.93 3.51 0.00 0.00 0.00 0.00 0.00 0.00 2.84 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 1.98 0.00 3.17 K jcn_only_AD lin chr2R + chr2R_4802513_4802569;chr2R_4802509_4802569 chr2R_4802505_4802569 chr2R_4802570_4805741;chr2R_4802033_4802504 6.98 7.84 6.98 6.82 3.70 0.00 5.88 7.69 8.70 4.76 5.71 6.74 2.70 2.70 11.76 2.17 6.67 3.12 6.25 8.74 8.70 17.65 10.47 8.22 10.00 4.44 17.33 13.33 13.64 6.06 0.00 11.11 8.89 13.43 3.85 5.88 8.99 10.67 5.93 3.06 9.52 5.56 2.86 11.11 6.00 8.33 13.16 7.22 5.63 14.29 6.85 5.26 4.44 11.90 12.28 5.26 9.09 8.62 K jcn_only_AA l(3)82Fd,I_chr3R_1147660_1148709 chr3R - chr3R_1119093_1119783 chr3R_1119484_1119783 chr3R_1119784_1119956 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.84 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 1.25 1.19 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 1.33 0.00 0.00 1.18 0.00 1.28 0.00 0.00 0.67 1.28 1.35 0.00 0.00 0.00 0.90 0.00 0.00 0.00 K cassette CG14985,RI_chr3L_4003965_4004166,RI_chr3L_4003965_4004515 chr3L + chr3L_4003965_4004515 chr3L_4003965_4004135;chr3L_4004342_4004515 chr3L_4004136_4004341 chr3L_4003865_4003964;chr3L_4004516_4004615 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG7280 chrX - chrX_18741352_18741414 chrX_18741351_18741352;chrX_18741414_18741415 chrX_18740415_18741351;chrX_18741415_18742642 0.00 0.00 NA NA NA NA NA 5.00 5.56 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA NA 7.14 11.76 0.00 NA 0.00 0.00 0.00 5.26 NA 0.00 7.14 NA 4.17 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Papss chr3L + chr3L_19838529_19838634;chr3L_19838529_19838596 chr3L_19838529_19838611 chr3L_19838397_19838528;chr3L_19838635_19838730 73.91 NA NA NA NA NA NA NA 73.08 NA NA 66.67 NA NA NA NA NA NA NA 68.75 NA NA 80.95 NA NA NA NA NA NA NA NA NA 91.67 69.57 NA NA NA NA NA NA NA 71.43 NA NA NA 73.91 NA NA 81.82 NA 75.00 NA NA NA NA NA NA 81.08 K cassette TepII,I_chr2L_7696207_7698724,I_chr2L_7697158_7697976,I_chr2L_7697582_7697976 chr2L - chr2L_7696207_7698724;chr2L_7697582_7698724;chr2L_7697158_7698724 chr2L_7697158_7697976,chr2L_7697582_7697976,chr2L_7696207_7697976;chr2L_7698131_7698724 chr2L_7697977_7698130 chr2L_7696107_7696206;chr2L_7698725_7698824 6.06 8.51 5.97 8.70 8.89 5.00 6.52 6.90 5.67 19.23 8.00 3.33 4.00 7.02 6.67 7.41 1.47 25.53 6.56 6.25 10.81 1.00 7.79 6.90 6.52 6.25 8.57 0.00 2.78 5.45 5.38 5.26 3.12 5.77 4.08 26.47 3.70 4.17 6.12 4.00 2.04 5.79 10.00 4.48 3.85 7.58 4.55 4.92 6.25 4.44 7.25 2.70 6.06 4.35 3.00 10.71 6.12 8.06 K jcn_only_AD Akt1 chr3R + chr3R_11926502_11926621;chr3R_11924988_11926621;chr3R_11925014_11926621;chr3R_11925383_11926621 chr3R_11925318_11926621 chr3R_11926622_11926719;chr3R_11924974_11924987 37.50 NA NA 30.00 NA NA 52.00 44.74 46.43 NA NA 44.44 NA NA NA 25.00 NA NA NA 19.23 NA 12.50 51.72 26.09 NA NA 36.36 NA 38.10 NA NA NA 32.35 37.50 NA NA 53.85 NA NA 47.62 NA 31.25 NA NA NA NA NA NA 45.71 NA 6.45 NA NA NA NA NA NA NA K alternative_donor pAbp,I_chr2R_14027838_14028996 chr2R + chr2R_14028464_14028996;chr2R_14028922_14028996 chr2R_14028460_14028996 chr2R_14028997_14029096;chr2R_14028264_14028459 40.00 42.86 NA 33.33 20.00 28.57 44.44 38.89 50.00 NA NA 44.44 16.67 50.00 NA 53.85 57.14 25.00 57.14 53.85 NA 36.36 37.50 16.67 NA 60.00 61.54 36.36 44.44 NA 40.00 NA 53.85 30.00 NA NA 22.22 NA 71.43 26.67 NA 40.00 NA 57.14 NA NA NA 37.50 40.00 NA NA NA NA NA 75.00 NA 20.00 28.57 K mutually_exclusive NFAT,RI_chrX_13543535_13546911,I_chrX_13544101_13544542 chrX + chrX_13543535_13546911,chrX_13547539_13548816 chrX_13543535_13543687,chrX_13544101_13548816 chrX_13546912_13547538 chrX_13543688_13544100 chrX_13543435_13543534;chrX_13548817_13549237 93.75 94.74 93.75 94.12 92.86 93.33 93.75 92.31 97.30 96.15 95.00 96.67 95.00 92.31 95.00 93.75 92.31 93.75 93.75 98.39 100.00 94.12 96.00 95.24 94.44 92.86 83.33 87.50 90.00 87.50 93.75 90.00 80.00 90.32 90.91 93.33 97.62 95.45 93.75 93.33 71.43 97.30 100.00 96.55 78.57 87.50 91.67 92.00 97.06 87.50 95.65 92.31 90.00 80.00 94.12 88.89 88.89 87.50 K alternative_donor Atu chr3R + chr3R_1439212_1439281 chr3R_1439215_1439281 chr3R_1439282_1439345;chr3R_1439150_1439211 100.00 94.74 100.00 100.00 100.00 90.91 100.00 100.00 96.77 100.00 NA 100.00 90.91 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 97.67 96.55 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 95.45 100.00 100.00 96.30 97.14 100.00 100.00 100.00 100.00 96.77 NA 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention MED15 chr2L + chr2L_476016_476077 chr2L_476015_476016;chr2L_476077_476078 chr2L_475916_476015;chr2L_476078_476230 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA K alternative_acceptor I_chr3R_11826508_11826910,GATAe chr3R + chr3R_11842288_11842430 chr3R_11842288_11842410 chr3R_11841950_11842287;chr3R_11842431_11843364 89.90 NA NA NA NA NA 87.50 NA 90.91 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor None chrU - chrU_4029374_4029432;chrU_4029374_4029436 chrU_4029374_4029489 99.03 98.97 98.91 99.35 98.21 98.85 100.00 99.43 98.89 99.21 100.00 98.84 100.00 98.61 99.09 100.00 98.92 98.88 98.92 98.58 98.73 96.69 99.52 99.22 100.00 100.00 100.00 100.00 96.04 99.22 98.94 98.51 98.89 99.32 100.00 100.00 99.53 98.43 98.61 98.48 98.28 99.55 100.00 99.25 98.46 98.18 98.73 97.99 99.45 100.00 100.00 97.83 99.03 98.39 100.00 100.00 99.07 98.97 K intron_retention vir-1,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,noncoding_2764,I_chr2L_12421830_12423260 chr2L - chr2L_12421830_12423260 chr2L_12421829_12421830;chr2L_12423260_12423261 chr2L_12421816_12421829;chr2L_12423261_12423360 74.47 78.57 75.00 89.83 83.33 62.50 75.00 70.37 80.43 NA 92.86 70.00 63.64 54.29 72.92 59.46 75.86 70.83 75.00 74.47 80.77 56.25 54.55 70.00 73.91 77.50 85.71 88.89 53.85 88.89 70.59 76.47 76.47 74.60 72.73 58.82 NA 87.50 NA 77.78 65.00 81.82 82.61 57.14 66.67 90.00 NA 90.00 76.06 72.22 69.23 63.64 NA NA 70.45 54.55 83.33 71.43 K jcn_only_AA I_chr2L_822032_822857,dock chr2L + chr2L_826508_829456;chr2L_826508_829421 chr2L_826508_829304 chr2L_826008_826507;chr2L_829457_829468 100.00 100.00 100.00 99.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.28 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 99.11 100.00 100.00 97.83 100.00 100.00 100.00 99.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 K cassette CG15611,I_chr2R_12996782_13000822 chr2R + chr2R_12996782_12997671 chr2R_12996782_12997447;chr2R_12997580_12997671 chr2R_12997448_12997579 chr2R_12996682_12996781;chr2R_12997672_12998005 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 98.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_donor e(r) chrX - chrX_8799622_8799801;chrX_8799622_8799982 chrX_8799622_8800141 chrX_8799538_8799621;chrX_8800142_8800333 97.03 97.92 98.17 96.23 98.50 96.59 97.47 96.69 96.26 97.33 99.01 96.75 98.47 95.88 95.73 96.77 96.88 97.32 96.97 94.95 96.19 97.78 98.51 97.77 96.15 95.58 96.62 95.00 92.06 98.06 98.18 94.23 97.03 96.55 97.41 96.25 98.51 98.28 97.73 94.78 96.63 97.69 95.56 97.26 91.43 95.90 97.50 87.80 97.18 97.42 97.08 98.72 97.12 97.48 96.24 98.40 97.38 90.91 K jcn_only_AA CG5646,I_chr3R_23386250_23386484,I_chr3R_23386287_23386484 chr3R - chr3R_23386250_23386484;chr3R_23386220_23386484;chr3R_23386237_23386484 chr3R_23386287_23386484 chr3R_23386485_23386584;chr3R_23386187_23386219 13.43 11.11 17.24 5.88 5.00 21.43 2.08 2.50 10.96 NA 5.00 12.50 NA 14.29 12.50 20.00 25.00 30.00 2.86 4.76 10.71 32.00 10.71 14.29 10.00 NA 12.28 14.00 15.79 15.62 13.43 24.00 4.76 10.87 13.95 15.38 11.94 10.34 9.76 34.04 15.00 19.30 25.00 12.28 20.69 15.69 13.51 30.56 13.95 15.15 15.22 10.00 28.57 8.82 11.90 11.76 7.69 NA K jcn_only_AA east,CR_chrX_1912038_1912737 chrX + chrX_1913540_1913603 chrX_1913540_1913600 chrX_1913091_1913539;chrX_1913604_1913770 62.09 63.77 58.90 71.74 58.18 57.75 65.56 77.06 62.50 62.50 59.26 57.04 62.96 53.33 59.78 58.59 71.64 63.16 59.15 62.09 65.45 56.06 60.87 65.26 49.15 51.79 64.71 53.57 48.89 62.71 56.04 72.73 60.00 62.96 56.90 55.77 66.67 63.64 64.08 55.95 64.00 68.24 71.01 68.48 67.65 53.06 57.69 59.72 73.13 67.57 58.54 59.65 60.00 64.29 64.20 65.00 50.00 51.72 K alternative_donor Ptp10D,CEF_chrX_11516219_11517862,I_chrX_11516225_11516345 chrX + chrX_11516225_11517785;chrX_11516219_11517785;chrX_11516213_11517785 chrX_11516391_11517785 chrX_11517786_11518234;chrX_11516125_11516212 71.43 NA 75.00 60.00 NA 66.67 100.00 60.00 88.89 NA 100.00 60.00 71.43 57.14 42.86 87.50 66.67 40.00 75.00 80.00 NA NA 50.00 NA NA 40.00 NA NA NA NA 71.43 NA 77.78 66.67 33.33 NA NA NA NA NA NA 76.92 100.00 100.00 NA NA NA 100.00 81.82 NA NA NA NA NA 66.67 NA NA 50.00 K intron_retention vari,I_chr2L_20792267_20794059 chr2L - chr2L_20790336_20790390 chr2L_20790335_20790336;chr2L_20790390_20790391 chr2L_20790125_20790335;chr2L_20790391_20790552 1.00 0.00 0.00 1.37 0.00 4.23 4.76 2.94 2.82 0.00 3.70 3.77 0.00 0.00 0.00 3.12 3.28 3.12 0.00 1.49 0.00 2.78 0.00 0.95 0.00 3.28 4.40 0.00 3.57 0.00 2.60 0.00 0.00 1.00 0.00 4.08 0.63 1.00 0.69 5.05 3.77 2.86 0.00 3.30 2.38 0.00 0.00 2.27 2.63 2.56 2.44 0.00 0.00 0.00 1.09 0.00 0.00 0.00 K intron_retention CG5916 chr3R + chr3R_11973393_11973464 chr3R_11973392_11973393;chr3R_11973464_11973465 chr3R_11973169_11973392;chr3R_11973465_11974096 0.00 0.00 0.00 7.41 NA 0.00 0.00 0.00 2.94 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA 8.33 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 5.56 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA K intron_retention CG7192,RI_chrX_17993756_17994097 chrX - chrX_17992545_17992611 chrX_17992544_17992545;chrX_17992611_17992612 chrX_17992463_17992544;chrX_17992612_17992679 1.63 0.00 1.54 8.05 0.00 0.00 2.50 4.05 2.05 0.00 0.00 0.84 2.38 0.00 4.88 0.00 4.55 0.00 3.39 2.16 1.85 2.22 4.26 2.78 0.00 1.92 8.86 4.88 11.90 0.00 1.27 2.27 1.98 0.00 2.94 10.53 0.00 0.00 2.73 1.17 5.94 0.83 0.00 2.30 0.79 1.28 2.78 0.00 1.63 0.00 2.35 0.00 3.45 0.00 2.20 0.00 0.00 0.62 K intron_retention CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2815768_2816013 chr2R_2815767_2815768;chr2R_2816013_2816014 chr2R_2815716_2815767;chr2R_2816014_2816113 90.00 NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA 66.67 NA 100.00 91.67 NA NA NA 88.89 NA NA 88.89 NA NA 70.00 NA NA NA 91.67 NA 84.62 92.31 NA NA NA NA NA 90.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA K intron_retention gish chr3R + chr3R_12106747_12107802 chr3R_12106746_12106747;chr3R_12107802_12107803 chr3R_12106738_12106746;chr3R_12107803_12107810 9.09 0.00 7.14 13.04 NA NA 20.00 19.23 20.00 NA NA 12.00 NA NA NA 20.00 NA NA 11.11 12.24 NA 7.14 5.88 17.65 6.67 21.43 NA 9.52 9.09 12.00 0.00 0.00 10.53 12.50 0.00 7.41 9.09 NA NA 6.67 12.50 3.85 NA 12.50 NA 0.00 NA 8.33 2.86 14.29 0.00 13.04 NA 0.00 5.88 0.00 NA 0.00 K alternative_acceptor I_chr4_247410_247797,yellow-h,R_chr4_261460_261560,I_chr4_264634_265805 chr4 + chr4_248867_249562 chr4_248867_249530 chr4_248662_248866;chr4_249563_249805 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 95.24 100.00 91.67 100.00 95.65 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K alternative_acceptor I_chrX_1757755_1757801,Pgam5,I_chrX_1793073_1794406,RI_chrX_1795648_1795745 chrX - chrX_1766937_1767005 chrX_1766940_1767005 chrX_1767006_1767583;chrX_1766389_1766936 75.00 73.33 79.41 71.43 77.78 78.57 70.97 77.78 79.55 91.67 78.95 66.00 81.25 63.16 69.23 69.57 73.33 71.43 78.95 76.92 75.00 77.42 75.00 72.46 75.76 77.27 87.88 73.91 67.86 80.56 75.00 82.14 76.92 67.57 72.92 66.67 81.08 75.56 79.66 68.29 73.77 76.47 68.18 66.67 67.86 75.44 75.00 57.14 77.27 70.45 65.31 82.61 73.53 86.00 83.33 82.98 76.12 65.85 K jcn_only_AD Fak56D,F_chr2R_15323055_15323097 chr2R - chr2R_15319898_15321006 chr2R_15319898_15320100 chr2R_15319808_15319897;chr2R_15321007_15321146 4.45 8.33 4.00 4.26 0.00 4.76 0.00 0.00 1.35 NA 19.23 4.17 4.00 4.55 7.41 11.43 NA 0.00 5.00 4.84 NA NA 16.13 NA NA 6.25 5.71 NA NA NA 2.78 NA NA 8.57 NA NA 13.79 4.76 7.41 2.17 NA 5.56 0.00 0.00 NA 7.41 NA 4.35 1.79 3.57 NA 13.64 NA NA 0.00 NA NA 0.00 K jcn_only_AD cryptocephal,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21318417_21318484 chr2L_21318420_21318484 chr2L_21318485_21318548;chr2L_21318351_21318416 94.83 94.37 93.73 95.60 95.62 93.92 95.88 94.80 95.03 94.38 96.00 94.64 94.72 95.69 95.09 94.79 93.62 94.16 95.20 95.78 95.45 93.64 96.00 94.65 94.66 94.79 94.63 88.25 95.52 94.02 95.46 94.23 93.75 96.00 95.48 95.12 94.65 95.46 95.13 94.51 94.06 95.76 92.59 95.61 94.86 94.83 95.68 94.13 94.70 95.83 95.52 95.08 93.19 96.23 95.18 96.46 94.50 93.64 K alternative_donor RpL15 chr3LHet + chr3LHet_2398018_2398127;chr3LHet_2397925_2398127;chr3LHet_2397992_2398127;chr3LHet_2398060_2398127;chr3LHet_2397841_2398127;chr3LHet_2398002_2398127;chr3LHet_2397820_2398127;chr3LHet_2398053_2398127 chr3LHet_2397859_2398127 chr3LHet_2398128_2398454;chr3LHet_2397802_2397819 0.49 0.00 4.35 1.04 0.00 0.00 8.33 1.45 6.25 0.00 0.00 7.14 11.11 7.41 2.34 3.45 0.00 3.33 3.12 3.23 5.56 0.00 0.00 0.00 0.00 3.12 0.00 1.07 0.00 0.00 0.94 0.44 0.46 0.79 0.00 0.00 0.00 0.00 0.00 0.29 0.74 2.12 1.56 0.00 0.49 1.84 0.00 0.85 2.69 0.00 0.00 5.88 0.00 0.00 3.61 0.00 3.33 0.50 K intron_retention CG11526 chr3L - chr3L_3324637_3324699 chr3L_3324636_3324637;chr3L_3324699_3324700 chr3L_3322910_3324636;chr3L_3324700_3325601 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pkc98E chr3R + chr3R_24865795_24866817 chr3R_24865794_24865795;chr3R_24866817_24866818 chr3R_24865764_24865794;chr3R_24866818_24867147 15.00 NA NA 0.00 NA NA 35.71 13.33 25.00 NA NA 19.05 NA NA NA NA NA NA NA 15.00 NA 23.53 13.64 NA 20.00 NA NA 33.33 16.67 11.11 NA NA 22.22 14.29 NA NA 19.23 NA 0.00 15.00 NA 10.53 NA NA NA NA NA 0.00 12.50 NA NA NA NA NA NA NA NA NA K alternative_donor I_chrX_15223901_15223968,HDAC6,I_chrX_15232958_15233665 chrX + chrX_15232699_15233659;chrX_15232958_15233659 chrX_15232738_15233659 chrX_15233660_15234340;chrX_15232108_15232698 4.76 0.00 0.00 13.64 0.00 0.00 0.00 15.00 8.00 0.00 0.00 0.00 10.00 16.67 14.29 0.00 0.00 0.00 0.00 10.00 0.00 6.90 0.00 0.00 0.00 22.22 0.00 6.25 12.50 5.56 0.00 15.38 7.69 9.52 0.00 0.00 5.13 11.11 6.06 6.25 4.76 0.00 0.00 13.33 0.00 13.33 0.00 4.76 8.70 5.88 5.26 0.00 9.09 8.00 0.00 6.25 0.00 11.11 K intron_retention CG2059 chrX + chrX_7181674_7181741 chrX_7181673_7181674;chrX_7181741_7181742 chrX_7181444_7181673;chrX_7181742_7181879 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA 13.04 0.00 NA 0.00 0.00 4.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 2.27 7.41 0.00 14.29 0.00 5.56 0.00 NA 0.00 12.50 2.70 0.00 0.00 NA 0.00 NA 9.09 0.00 0.00 K intron_retention CG14054,I_chrX_1962457_1964222 chrX - chrX_1959925_1959977 chrX_1959924_1959925;chrX_1959977_1959978 chrX_1959850_1959924;chrX_1959978_1960121 100.00 NA 88.89 100.00 NA NA NA 87.50 100.00 NA 100.00 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA 92.31 100.00 NA NA NA 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K jcn_only_AD CG6724 chr2L - chr2L_10768891_10768953 chr2L_10768891_10768947 chr2L_10768644_10768890;chr2L_10768954_10769614 100.00 99.10 99.03 99.38 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.17 100.00 100.00 100.00 100.00 100.00 98.98 98.90 100.00 100.00 100.00 99.32 100.00 98.08 100.00 99.18 100.00 100.00 100.00 100.00 98.76 99.25 100.00 98.00 97.73 99.43 100.00 99.40 99.44 99.31 100.00 100.00 99.26 99.51 99.44 100.00 98.84 100.00 100.00 99.21 100.00 99.32 100.00 99.18 100.00 100.00 99.73 K jcn_only_AD Nop60B,AT25722,F_chr2R_20073291_20073744,snoRNA:Or-CD9b,snmRNA:60Cb chr2R + chr2R_20073291_20073744 chr2R_20073545_20073744 chr2R_20073745_20073751;chr2R_20073238_20073290 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 NA NA 97.14 NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 100.00 NA NA NA 96.88 NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA 100.00 NA 95.24 NA NA NA 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 K intron_retention I_chr3R_17191403_17191730,noncoding_18164 chr3R + chr3R_17191403_17191725 chr3R_17191402_17191403;chr3R_17191725_17191726 chr3R_17191372_17191402;chr3R_17191726_17192060 38.10 NA NA 25.00 23.08 NA 37.50 46.15 33.33 NA NA 53.33 NA NA NA 38.89 50.00 NA NA 41.18 NA NA 35.71 NA NA NA NA 58.33 NA NA 13.16 NA NA 40.00 NA NA 33.33 NA NA NA NA 38.10 NA NA NA NA 41.67 NA 25.00 25.00 NA 38.46 NA NA NA 21.43 50.00 NA K jcn_only_AD CG14408,RI_chrX_14722065_14722693 chrX - chrX_14722065_14723168 chrX_14722065_14722693 chrX_14721965_14722064;chrX_14723169_14724380 5.56 NA NA NA NA NA NA NA 6.67 NA NA 15.00 NA NA NA NA NA NA NA 0.00 NA 6.67 8.33 4.76 NA NA NA NA NA NA NA NA 5.56 9.68 NA NA 3.85 NA NA 5.00 NA 5.71 NA NA 0.00 NA NA NA 11.54 NA NA NA NA NA NA 5.00 NA 4.17 K intron_retention Glued chr3L + chr3L_13922816_13922879 chr3L_13922815_13922816;chr3L_13922879_13922880 chr3L_13922751_13922815;chr3L_13922880_13922972 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 5.88 1.69 0.00 0.00 5.13 0.00 7.89 10.71 10.42 0.00 0.00 0.00 0.00 0.00 0.00 4.35 3.17 0.00 0.00 1.52 4.00 1.19 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG3632,RI_chrX_16195880_16196242 chrX + chrX_16190917_16191693 chrX_16190917_16191682 chrX_16190893_16190916;chrX_16191694_16191751 35.71 NA NA NA NA NA NA NA NA NA NA 29.41 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA 36.36 NA NA NA NA NA 27.27 NA 30.77 NA NA 66.67 NA NA NA NA NA 35.71 NA NA NA NA NA NA NA K intron_retention unc-13,RI_chr4_892852_895828,RI_chr4_894198_895828,E_chr4_894796_894871,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_894787_894871 chr4_894786_894787;chr4_894871_894872 chr4_894696_894786;chr4_894872_894971 0.00 0.00 3.70 6.67 0.00 0.00 2.54 5.56 6.76 0.00 NA 0.00 0.00 0.00 0.00 1.75 0.00 3.85 5.00 0.00 0.00 2.63 5.26 0.00 0.00 0.00 6.90 10.00 NA 0.00 3.77 0.00 0.00 6.15 0.00 2.13 0.00 0.00 0.00 0.00 0.00 6.25 0.00 4.55 NA 0.00 0.00 0.00 5.26 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chrX_502548_513324,CG13366,I_chrX_508729_508806,I_chrX_509497_513324,I_chrX_509727_511407,I_chrX_509727_511477,noncoding_21186,I_chrX_509834_511407,CRE_chrX_509851_511307,I_chrX_510004_511307,I_chrX_510004_511407,I_chrX_513176_513324,I_chrX_513519_513631 chrX - chrX_509727_511477 chrX_509726_509727;chrX_511477_511478 chrX_509715_509726;chrX_511478_511507 100.00 NA NA NA NA NA 100.00 80.00 93.75 NA NA 91.67 NA NA NA 92.31 NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA I_chr2R_5857058_5857250,I_chr2R_5857078_5857245,CG12134 chr2R + chr2R_5858927_5858984 chr2R_5858927_5858981 chr2R_5858680_5858926;chr2R_5858985_5859948 99.27 96.77 94.59 94.74 100.00 92.00 100.00 100.00 100.00 NA 100.00 95.52 100.00 100.00 100.00 100.00 100.00 97.56 97.62 98.02 100.00 NA 97.44 100.00 NA NA 100.00 93.33 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 95.16 97.22 97.78 97.92 NA 100.00 100.00 100.00 100.00 96.88 100.00 95.83 98.53 96.30 95.24 95.65 96.36 92.00 97.67 NA 100.00 98.21 K jcn_only_AD ctp,I_chrX_4582351_4582483,I_chrX_4582382_4585669,I_chrX_4582627_4585669,RI_chrX_4582706_4585629,RI_chrX_4582706_4592329 chrX + chrX_4582706_4585669;chrX_4582351_4585669 chrX_4582325_4585669 chrX_4585670_4585729;chrX_4582282_4582324 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 K cassette Pkn,EI_chr2R_5143544_5143611,CI_chr2R_5143544_5146344,I_chr2R_5171635_5172166 chr2R - chr2R_5143215_5146344;chr2R_5143215_5144914 chr2R_5143215_5143333;chr2R_5143544_5144914,chr2R_5143544_5146344 chr2R_5143334_5143543 chr2R_5143018_5143214;chr2R_5146345_5146444 1.37 0.00 0.00 0.00 4.00 3.23 4.55 2.94 1.69 0.00 4.55 5.56 5.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 5.00 4.17 2.50 1.67 2.56 0.00 2.56 2.74 3.17 1.32 4.00 0.00 2.13 0.00 0.00 1.67 2.56 0.00 1.06 3.70 0.00 1.56 0.00 2.38 0.00 0.00 4.76 0.00 0.00 2.22 1.47 0.00 0.00 0.00 3.45 0.00 0.00 5.71 K cassette CG31534,I_chr3R_536075_536566 chr3R + chr3R_536099_536619;chr3R_536075_536619 chr3R_536099_536337,chr3R_536075_536337;chr3R_536443_536619 chr3R_536338_536442 chr3R_535975_536074;chr3R_536620_536666 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31523,I_chr3R_294322_294479,RI_chr3R_294322_296218,I_chr3R_294322_297157,I_chr3R_294322_298014,I_chr3R_294322_300973,RI_chr3R_294322_300982,I_chr3R_294322_304799,RI_chr3R_298911_304354 chr3R - chr3R_294322_296835 chr3R_294321_294322;chr3R_296835_296836 chr3R_294222_294321;chr3R_296836_297508 1.69 0.63 1.93 1.28 0.00 2.02 1.55 1.80 1.31 0.00 0.00 1.23 5.08 1.81 1.72 2.08 1.44 1.00 1.13 1.48 1.52 5.56 1.60 1.75 2.46 2.41 2.08 5.00 2.88 1.83 1.10 2.22 1.44 2.18 2.73 2.61 2.22 2.61 3.11 1.13 1.50 0.92 1.00 1.35 1.07 2.41 2.42 1.58 1.31 1.69 2.59 2.02 2.60 1.68 1.95 0.00 0.00 1.10 K intron_retention CG31054,CG4849 chr3R + chr3R_23790253_23790310 chr3R_23790252_23790253;chr3R_23790310_23790311 chr3R_23789725_23790252;chr3R_23790311_23790402 0.00 0.00 0.00 10.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA K intron_retention eIF5B,I_chr3L_3429084_3443457,I_chr3L_3432366_3445364 chr3L - chr3L_3432366_3443457 chr3L_3432365_3432366;chr3L_3443457_3443458 chr3L_3432266_3432365;chr3L_3443458_3443557 0.00 0.38 0.00 0.00 0.00 0.51 0.75 0.28 0.19 0.00 0.00 0.43 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.59 0.00 0.46 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 1.03 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.42 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Dbp80 chr3LHet + chr3LHet_2543829_2543917;chr3LHet_2543829_2543887 chr3LHet_2543829_2543938 chr3LHet_2543765_2543828;chr3LHet_2543939_2543944 0.00 3.70 NA 0.00 0.00 8.33 0.00 2.33 0.00 NA NA 2.94 0.00 0.00 4.76 0.00 0.00 7.41 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA 3.45 NA NA 3.12 NA NA NA NA NA 3.85 NA 3.33 NA 2.63 NA NA 3.39 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 0.00 NA K alternative_acceptor gish chr3R + chr3R_12100604_12100675;chr3R_12100604_12100709 chr3R_12100604_12100684 chr3R_12100535_12100603;chr3R_12100710_12100891 6.58 6.58 5.80 4.35 13.95 10.00 4.85 4.50 5.00 3.45 10.91 6.67 5.17 5.00 8.62 7.23 6.90 9.26 5.45 3.48 9.09 10.23 7.75 6.38 12.20 21.67 7.41 9.26 9.88 3.12 3.17 12.50 2.55 5.32 5.26 7.59 6.90 7.69 6.31 2.52 6.17 6.35 7.14 3.85 4.26 2.56 10.53 2.86 3.45 10.71 6.78 4.92 5.26 11.11 8.96 6.67 7.27 2.78 K intron_retention CG16838,I_chr3L_16125390_16125510 chr3L + chr3L_16125390_16125639 chr3L_16125389_16125390;chr3L_16125639_16125640 chr3L_16125290_16125389;chr3L_16125640_16126338 66.67 86.67 78.26 76.67 64.29 75.00 78.26 87.10 72.50 53.85 66.67 71.88 75.00 73.33 66.67 77.14 75.00 63.16 69.57 58.82 53.85 52.63 66.67 66.67 81.82 73.33 71.43 75.00 58.82 52.94 66.67 60.00 62.50 71.43 66.67 73.33 57.14 50.00 63.64 55.32 64.29 62.50 66.67 60.00 62.50 54.17 NA 52.00 70.59 88.89 62.50 63.64 41.67 NA 65.38 NA 50.00 37.50 K alternative_acceptor CG17494 chr2L + chr2L_22471985_22472618;chr2L_22471985_22472623 chr2L_22471985_22472552 chr2L_22471978_22471984;chr2L_22472624_22473865 100.00 97.83 100.00 100.00 97.78 100.00 100.00 100.00 100.00 97.06 100.00 99.18 100.00 95.83 100.00 99.24 100.00 98.41 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 100.00 98.33 100.00 100.00 98.72 100.00 97.27 100.00 98.36 100.00 100.00 97.50 100.00 97.90 98.61 98.50 96.67 100.00 100.00 100.00 100.00 98.03 97.92 100.00 96.20 96.15 100.00 100.00 100.00 100.00 100.00 100.00 K cassette simj,I_chr3L_10680263_10680313 chr3L + chr3L_10679362_10680337 chr3L_10679362_10680175;chr3L_10680263_10680337 chr3L_10680176_10680262 chr3L_10679064_10679361;chr3L_10680338_10680413 96.19 96.55 93.10 94.29 90.91 93.75 96.67 98.57 94.44 96.92 97.78 95.29 97.87 97.30 97.10 98.25 95.12 91.94 96.36 96.19 97.62 88.20 93.86 95.29 92.54 97.73 96.35 96.33 89.68 97.14 95.92 96.00 96.36 93.59 97.10 96.43 96.03 92.59 93.50 97.59 96.83 98.92 93.02 96.04 95.51 93.55 98.53 94.93 95.83 90.91 97.83 95.00 100.00 98.00 96.77 94.37 98.15 98.61 K intron_retention Nedd4,I_chr3L_17526753_17527450,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17526753_17527450 chr3L_17526752_17526753;chr3L_17527450_17527451 chr3L_17526665_17526752;chr3L_17527451_17527550 91.11 93.33 95.00 97.67 72.73 82.35 91.11 90.70 84.09 80.00 92.86 89.39 94.12 92.31 96.88 95.83 78.95 89.66 96.67 95.71 90.91 85.00 89.19 84.62 82.14 92.86 81.82 NA 78.26 83.33 87.88 88.89 92.31 92.16 96.30 90.62 84.62 92.86 92.86 94.59 78.57 87.72 94.44 89.47 94.12 94.44 100.00 92.59 92.31 91.67 96.67 88.89 76.92 83.33 93.94 91.67 NA 84.62 K intron_retention G-salpha60A chr2R + chr2R_19832604_19833218 chr2R_19832603_19832604;chr2R_19833218_19833219 chr2R_19832483_19832603;chr2R_19833219_19833347 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA TepIV,EI_chr2L_19548696_19549582 chr2L + chr2L_19553916_19553969;chr2L_19553916_19553975 chr2L_19553916_19553978 chr2L_19553362_19553915;chr2L_19553979_19556092 1.05 2.22 2.79 0.64 0.64 0.00 1.48 0.80 2.07 1.84 0.97 0.87 0.37 1.05 1.96 0.55 0.56 0.00 1.36 1.63 1.64 1.20 0.59 0.41 0.00 1.22 0.43 1.00 1.07 1.15 0.85 2.24 1.03 0.33 0.66 4.06 1.29 1.36 0.84 2.03 0.30 1.27 1.78 1.13 1.27 0.98 1.63 1.51 1.01 1.03 0.86 1.20 1.27 2.21 1.83 0.98 0.26 0.72 K intron_retention CG1399,I_chr2R_3574133_3574191 chr2R - chr2R_3565240_3565374 chr2R_3565239_3565240;chr2R_3565374_3565375 chr2R_3564840_3565239;chr2R_3565375_3565909 92.55 92.73 100.00 95.65 97.37 92.68 86.67 91.92 96.58 94.34 83.78 93.51 97.73 87.23 93.62 93.55 98.04 85.45 94.59 91.53 76.32 94.17 87.88 90.91 92.73 93.88 86.52 93.18 85.90 88.89 88.75 88.24 90.91 92.55 90.74 98.48 95.77 96.30 88.46 96.67 91.76 93.58 100.00 91.95 92.31 92.22 94.20 93.42 89.81 95.92 84.95 90.16 85.71 88.89 94.37 88.89 89.19 95.18 K jcn_only_AA RpL35A,I_chr3R_1292099_1292701,I_chr3R_1292104_1292512,I_chr3R_1292125_1292701 chr3R - chr3R_1292104_1292701 chr3R_1292125_1292701 chr3R_1292702_1292730;chr3R_1292047_1292103 0.13 0.15 0.15 0.16 0.16 0.00 0.13 0.20 0.15 0.06 0.10 0.09 0.10 0.11 0.25 0.37 0.13 0.20 0.09 0.12 0.03 0.00 0.09 0.30 0.15 0.22 0.14 1.16 0.05 0.15 0.20 0.00 0.32 0.10 0.00 0.00 0.08 0.16 0.11 0.17 0.59 0.10 0.24 0.00 0.05 0.19 0.15 0.00 0.27 0.08 0.11 0.13 0.10 0.00 0.10 0.16 0.14 0.00 K cassette Pli,I_chr3R_19691378_19715415 chr3R - chr3R_19691378_19715415 chr3R_19691378_19714778;chr3R_19714842_19715415 chr3R_19714779_19714841 chr3R_19691285_19691377;chr3R_19715416_19715515 100.00 NA 100.00 100.00 NA NA 91.67 90.00 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA NA 90.91 NA 90.00 90.00 100.00 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 87.50 NA 90.00 NA 93.33 NA NA NA NA 85.71 NA 90.00 NA NA NA 85.71 NA NA NA N mutually_exclusive crol,I_chr2L_11799403_11802904 chr2L - chr2L_11799403_11802904,chr2L_11803675_11803784 chr2L_11799403_11800154,chr2L_11800323_11803784 chr2L_11802905_11803674 chr2L_11800155_11800322 chr2L_11799303_11799402;chr2L_11803785_11803898 0.00 0.00 0.00 38.71 0.00 0.00 0.00 20.00 29.63 0.00 0.00 0.00 0.00 0.00 37.50 0.00 0.00 0.00 0.00 42.31 0.00 67.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.75 41.18 46.15 39.13 0.00 0.00 33.33 0.00 0.00 0.00 0.00 0.00 61.54 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Dsp1,I_chrX_16228447_16229355,I_chrX_16231287_16231413 chrX + chrX_16228447_16230320 chrX_16228446_16228447;chrX_16230320_16230321 chrX_16228347_16228446;chrX_16230321_16230776 8.72 12.20 7.27 6.49 5.71 8.00 12.50 7.87 7.76 17.65 7.32 8.18 5.77 7.94 8.93 5.94 8.89 4.08 7.46 8.72 4.17 17.78 11.11 9.43 9.30 4.65 18.97 25.00 5.71 9.76 5.56 13.79 8.82 10.75 5.13 3.92 7.14 7.69 10.91 11.11 0.00 9.90 5.88 12.50 11.76 11.36 9.52 7.50 8.18 14.04 7.89 10.20 11.76 5.26 10.53 0.00 11.90 17.86 K alternative_acceptor MB8.chr3R.pasa.66,Alh,REI_chr3R_2921238_2921297,RI_chr3R_2921566_2921658,I_chr3R_2927820_2933442,RI_chr3R_2946518_2946663 chr3R - chr3R_2922973_2924040 chr3R_2923069_2924040 chr3R_2924041_2924205;chr3R_2922906_2922972 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG33129,I_chr2L_10966410_10967142,noncoding_2515,I_chr2L_10966622_10967108 chr2L - chr2L_10966622_10968104;chr2L_10966622_10968083;chr2L_10966622_10967855 chr2L_10966622_10968133 chr2L_10966522_10966621;chr2L_10968134_10968152 93.55 91.30 93.10 96.52 98.21 82.05 94.23 97.20 92.78 NA 98.33 96.64 90.57 98.44 94.19 92.92 90.00 95.31 93.90 92.98 95.65 86.36 NA NA NA 91.11 NA NA 96.00 NA 93.65 93.55 90.74 94.64 NA NA NA NA NA NA 78.57 95.92 90.74 NA 100.00 79.31 NA 93.94 91.41 NA NA 90.48 NA NA 91.78 NA 86.96 94.25 K alternative_donor slgA,I_chrX_21253735_21253820 chrX + chrX_21245768_21247146;chrX_21245849_21247146 chrX_21245487_21247146 chrX_21247147_21247693;chrX_21245405_21245486 85.16 NA NA NA NA NA NA 85.71 90.91 NA NA 84.62 NA 81.82 NA 75.00 NA NA NA 90.91 NA NA NA NA NA NA NA NA NA NA 92.31 NA NA 69.23 NA NA NA NA NA NA NA 91.67 NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG30109,CG30108,I_chr2R_13557316_13557647 chr2R + chr2R_13557138_13557647 chr2R_13557138_13557191 chr2R_13556976_13557137;chr2R_13557648_13557747 88.89 96.15 95.45 NA NA 90.48 91.43 74.42 86.96 NA NA 87.76 90.00 95.24 96.00 95.45 NA 82.35 82.76 85.71 NA NA 78.12 86.11 NA NA 86.96 NA NA 76.19 42.68 90.00 90.62 89.13 NA NA 87.10 92.86 92.86 76.92 67.65 84.21 NA 85.71 90.00 75.00 90.00 66.67 92.68 75.00 91.67 88.89 100.00 96.00 82.14 88.89 90.48 65.45 K cassette l(2)gl,I_chr2L_15712_16650,I_chr2L_17150_19884,I_chr2L_17208_18260,RI_chr2L_17213_18330,I_chr2L_17213_21135,RI_chr2L_20021_20830,I_chr2L_20974_21065 chr2L - chr2L_15712_19879 chr2L_15712_17057;chr2L_17213_19879 chr2L_17058_17212 chr2L_15612_15711;chr2L_19880_20015 100.00 100.00 100.00 100.00 95.24 95.65 97.56 100.00 100.00 100.00 100.00 98.31 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 98.46 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG32579,I_chrX_16217978_16218111,I_chrX_16218930_16219644 chrX + chrX_16217963_16218111 chrX_16217978_16218111 chrX_16218112_16218211;chrX_16217878_16217962 0.00 0.00 0.00 3.12 0.00 0.00 2.04 1.39 2.38 4.76 0.00 1.64 2.13 0.00 5.26 0.00 0.00 0.00 2.27 1.37 0.00 0.00 0.00 1.92 0.00 2.94 4.44 0.00 1.67 2.38 1.23 0.00 1.18 0.00 2.13 0.00 0.00 0.00 0.00 0.00 1.47 1.59 0.00 0.00 0.00 1.19 0.00 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 K jcn_only_AA lola,I_chr2R_6419625_6419686,I_chr2R_6421474_6422304,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6421474_6422354 chr2R_6421904_6422354 chr2R_6422355_6422404;chr2R_6421381_6421473 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 1.17 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.50 0.00 2.78 0.75 0.00 0.00 0.58 1.23 0.00 0.00 0.41 0.83 0.00 0.00 0.73 0.00 0.74 0.00 0.00 0.00 1.49 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG4096,I_chrX_5601534_5602019 chrX + chrX_5601534_5602019 chrX_5601534_5601593;chrX_5601968_5602019 chrX_5601594_5601967 chrX_5601528_5601533;chrX_5602020_5602119 100.00 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 100.00 80.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 85.71 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 N cassette CG34408,I_chrX_10120689_10121004 chrX + chrX_10116620_10119223 chrX_10116620_10118951;chrX_10119093_10119223 chrX_10118952_10119092 chrX_10116359_10116619;chrX_10119224_10119749 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522932_523360;chrX_522949_523360 chrX_522912_523360 chrX_523361_523436;chrX_522849_522911 97.34 98.02 98.23 98.05 96.43 96.36 82.56 96.79 97.44 97.56 93.06 98.72 94.20 97.30 97.83 97.45 95.62 93.71 93.79 97.64 95.17 95.45 97.89 97.27 94.84 67.76 97.78 95.06 97.96 93.72 96.40 96.08 97.48 97.38 95.74 97.13 97.90 99.10 97.80 97.31 92.05 97.06 94.63 99.12 97.90 96.55 98.43 98.41 96.37 98.59 98.36 97.25 99.20 98.40 97.49 98.81 97.34 98.02 K intron_retention Cyp4e2,Cyp4e1 chr2R + chr2R_4333817_4333876 chr2R_4333816_4333817;chr2R_4333876_4333877 chr2R_4333447_4333816;chr2R_4333877_4334051 1.32 1.32 2.78 2.94 4.17 0.00 2.44 1.82 0.00 0.00 0.00 4.81 6.67 3.03 0.00 0.00 0.00 0.00 2.82 2.02 0.00 0.00 0.00 0.00 3.33 1.56 2.06 8.57 0.00 0.00 4.88 0.00 1.44 2.86 5.88 0.00 1.72 0.00 1.12 0.95 0.00 2.68 5.56 0.89 4.17 2.47 3.53 0.00 3.67 2.91 1.22 1.92 0.00 0.00 2.44 0.00 0.00 0.00 K intron_retention CG8596,I_chr3L_7336128_7336203,RI_chr3L_7336707_7336767,I_chr3L_7337046_7338155,I_chr3L_7340885_7340945 chr3L - chr3L_7336711_7336767 chr3L_7336710_7336711;chr3L_7336767_7336768 chr3L_7336204_7336710;chr3L_7336768_7336867 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 3.85 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14164,CG6707 chr3L - chr3L_9886565_9886617 chr3L_9886564_9886565;chr3L_9886617_9886618 chr3L_9886283_9886564;chr3L_9886618_9886754 0.00 NA NA 9.30 NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA 9.68 NA 0.00 3.70 6.25 NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA NA K intron_retention CG9007,RI_chr3L_14010982_14011111 chr3L + chr3L_14010982_14011045 chr3L_14010981_14010982;chr3L_14011045_14011046 chr3L_14010882_14010981;chr3L_14011046_14013230 0.00 7.69 0.00 0.00 0.00 0.00 0.00 2.04 1.82 3.03 0.00 4.17 0.00 3.85 0.00 9.30 0.00 0.00 12.50 3.57 0.00 0.00 8.00 5.56 0.00 0.00 6.67 0.00 8.33 0.00 0.00 NA 0.00 0.00 0.00 18.52 2.78 5.26 0.00 2.70 0.00 2.08 0.00 2.38 NA 4.55 0.00 2.86 5.80 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 K intron_retention I_chrX_2036036_2037024,Pgd chrX + chrX_2039747_2041207 chrX_2039746_2039747;chrX_2041207_2041208 chrX_2039523_2039746;chrX_2041208_2042599 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 1.37 0.85 0.88 0.00 0.00 0.00 0.00 0.00 3.19 0.32 0.00 0.00 0.61 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Eps-15,I_chr2R_20660319_20660496 chr2R - chr2R_20657207_20659247 chr2R_20657206_20657207;chr2R_20659247_20659248 chr2R_20656942_20657206;chr2R_20659248_20659313 91.40 92.68 80.56 85.71 92.31 88.57 91.18 91.30 91.67 87.50 100.00 100.00 85.19 95.65 97.56 82.76 92.59 90.32 85.19 91.55 93.10 100.00 92.00 89.13 96.55 86.21 97.44 91.67 92.11 90.24 89.47 91.30 86.67 90.91 91.11 93.33 90.74 87.50 93.10 91.40 93.94 90.14 95.24 91.11 87.88 92.50 97.87 90.14 87.14 91.49 92.98 81.82 91.49 97.92 93.18 83.02 93.65 85.51 N alternative_acceptor vkg,I_chr2L_5027222_5027297,I_chr2L_5027222_5028118 chr2L - chr2L_5027204_5027351 chr2L_5027222_5027351 chr2L_5027352_5027389;chr2L_5027122_5027203 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD I_chr2R_7171366_7171418,fbl6,dare chr2R - chr2R_7176066_7176572;chr2R_7176066_7177174 chr2R_7176066_7176897 chr2R_7175150_7176065;chr2R_7177175_7177253 83.33 NA NA 81.58 NA NA 86.21 93.33 68.33 NA NA 62.16 93.33 NA 75.00 65.52 NA NA 75.86 83.33 NA NA 95.45 90.91 NA 78.26 85.71 NA NA 88.46 83.33 NA 90.00 78.05 95.45 NA 78.57 NA 85.00 81.48 NA 92.31 NA NA NA NA NA NA 72.34 NA NA 75.00 NA NA 87.80 NA NA NA K intron_retention CG31601 chr2L - chr2L_22042348_22042401 chr2L_22042347_22042348;chr2L_22042401_22042402 chr2L_22042107_22042347;chr2L_22042402_22043034 29.31 23.26 30.77 53.21 31.03 23.68 18.10 26.61 25.78 23.53 28.95 30.21 30.91 29.63 30.77 37.00 30.00 26.32 26.92 26.51 25.64 60.00 37.04 26.83 50.00 47.17 29.31 26.47 45.00 45.95 29.73 42.31 44.44 26.55 23.40 42.11 17.86 34.78 36.36 32.39 28.26 31.25 28.81 16.00 45.45 30.36 24.24 33.33 25.74 35.90 27.08 39.13 22.22 26.67 29.31 25.93 18.52 25.27 K intron_retention br,I_chrX_1517022_1518170,chrX_1531825_1532171.0,chrX_1532359_1533289.0,chrX_1533577_1534629.0,chrX_1535554_1536485.0,chrX_1539850_1540090.0,chrX_1540212_1541396.0,chrX_1544237_1547430.0,chrX_1547632_1547887.0,noncoding_21384,dor chrX + chrX_1531368_1552820 chrX_1531367_1531368;chrX_1552820_1552821 chrX_1531317_1531367;chrX_1552821_1552858 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG3419 chr2R + chr2R_20299633_20299700 chr2R_20299643_20299700 chr2R_20299701_20301588;chr2R_20299436_20299632 96.87 100.00 NA 93.10 NA NA 100.00 NA 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA NA 94.74 NA NA 94.12 97.30 91.30 NA 92.86 NA 100.00 96.43 90.48 NA NA 100.00 NA 97.73 97.67 91.43 94.74 100.00 NA 100.00 NA 90.32 NA 100.00 92.00 NA 100.00 NA 94.34 NA 93.75 95.45 96.30 95.83 100.00 NA K intron_retention CG4707 chr2R - chr2R_20492462_20492516 chr2R_20492461_20492462;chr2R_20492516_20492517 chr2R_20492085_20492461;chr2R_20492517_20492907 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 7.69 16.67 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG13822,RI_chr3R_19503360_19503522 chr3R + chr3R_19503360_19503577 chr3R_19503360_19503522 chr3R_19503260_19503359;chr3R_19503578_19503622 1.98 4.08 1.83 3.12 1.30 1.47 2.83 1.46 1.22 2.63 2.27 2.08 3.77 1.37 1.14 0.87 0.00 0.00 0.00 0.99 0.00 1.43 5.80 5.97 4.00 0.00 7.69 8.57 1.75 5.45 18.63 0.00 2.35 0.72 7.84 2.90 2.63 3.17 2.06 1.98 8.11 1.20 0.00 6.06 3.49 9.09 2.88 0.00 2.88 1.89 1.63 0.00 1.12 5.36 0.98 7.35 0.29 1.27 K jcn_only_AD spi,I_chr2L_19569183_19577185,I_chr2L_19569227_19572142,I_chr2L_19569227_19577173,mir-2a-2,mir-2a-1,mir-2b-2 chr2L - chr2L_19569227_19572142 chr2L_19569227_19571571 chr2L_19569127_19569226;chr2L_19572143_19572236 100.00 100.00 100.00 100.00 100.00 100.00 99.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.55 99.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA RpL22,noncoding_21234,snoRNA:Psi18S-531,snoRNA:Psi28S-2179 chrX - chrX_657025_658334;chrX_657022_658334 chrX_657019_658334 chrX_658335_658556;chrX_656593_657018 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.03 0.02 0.00 0.03 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.03 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.02 0.03 0.02 0.04 0.00 0.00 0.00 0.00 0.06 0.00 0.05 0.00 0.04 0.07 0.00 0.02 0.02 0.02 0.01 K intron_retention I_chrX_4000307_4003527,CG4857 chrX + chrX_4012313_4012388 chrX_4012312_4012313;chrX_4012388_4012389 chrX_4011997_4012312;chrX_4012389_4013050 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28.57 0.00 0.00 6.90 4.17 12.77 16.67 0.00 3.33 0.00 NA 0.00 0.00 8.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K intron_retention CG6912 chr3R - chr3R_10962502_10962563 chr3R_10962501_10962502;chr3R_10962563_10962564 chr3R_10962433_10962501;chr3R_10962564_10962631 8.18 8.05 7.63 10.28 9.62 4.10 12.04 9.72 11.11 18.18 17.39 6.74 9.30 8.18 9.16 4.02 13.56 6.87 5.50 4.61 7.61 11.76 6.85 7.95 21.62 14.74 7.19 6.78 16.22 6.94 16.92 4.60 8.99 7.84 5.63 13.79 10.67 10.34 5.33 8.00 21.57 5.83 13.70 9.09 8.11 3.92 10.48 11.11 4.65 42.86 9.40 18.18 3.85 6.25 6.21 6.98 6.58 9.47 K intron_retention CG10585 chr3L + chr3L_21021758_21021815 chr3L_21021757_21021758;chr3L_21021815_21021816 chr3L_21020914_21021757;chr3L_21021816_21022005 0.00 2.50 0.00 17.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 18.18 2.90 3.39 0.00 0.00 0.00 9.76 8.33 0.00 0.00 0.00 3.57 0.00 0.00 2.13 3.41 2.38 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 2.78 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14741 chr3R - chr3R_7900616_7900895 chr3R_7900615_7900616;chr3R_7900895_7900896 chr3R_7900181_7900615;chr3R_7900896_7901144 58.09 63.27 58.33 57.85 76.19 72.73 57.47 72.32 65.41 36.84 63.64 64.49 NA 70.45 66.04 62.20 69.86 71.67 71.19 78.16 62.26 52.54 45.95 47.73 43.75 35.71 58.57 54.55 41.84 45.45 58.82 63.64 45.45 67.44 39.39 28.00 43.08 60.87 56.90 60.00 44.44 68.97 70.45 39.29 40.48 36.96 31.58 40.66 71.93 61.11 56.25 51.72 42.22 46.67 60.00 53.85 58.82 42.86 K intron_retention l(2)gd1,Gr32a chr2L + chr2L_11109508_11110158 chr2L_11109507_11109508;chr2L_11110158_11110159 chr2L_11109356_11109507;chr2L_11110159_11110249 6.67 0.00 5.56 7.69 0.00 6.06 11.29 4.41 6.31 5.88 8.82 6.94 3.12 10.00 5.71 8.93 10.26 3.03 9.52 6.47 20.00 5.88 5.41 5.77 9.76 20.00 11.11 7.32 22.86 7.69 2.50 5.41 5.26 5.88 10.53 21.88 11.76 0.00 4.84 8.96 12.24 8.79 0.00 2.44 5.13 12.68 9.26 15.00 6.49 7.25 4.84 13.79 6.67 8.89 11.90 4.17 6.25 2.82 K intron_retention ras chrX + chrX_10638695_10638862 chrX_10638694_10638695;chrX_10638862_10638863 chrX_10638539_10638694;chrX_10638863_10638943 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG17082,I_chr2R_632143_635290,R_chr2R_642176_644740,I_chr2R_644094_644145,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_631984_636726;chr2R_632083_636726;chr2R_631907_636726;chr2R_632143_636726 chr2R_631971_636726 chr2R_636727_636891;chr2R_631902_631906 0.00 NA NA 7.14 NA NA 6.25 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K multi_cassette CG41378,I_chr2RHet_1545717_1605870,I_chr2RHet_1545717_1621473,I_chr2RHet_1545717_1621569,I_chr2RHet_1606049_1607768,RI_chr2RHet_1606049_1621284,noncoding_9480 chr2RHet - chr2RHet_1545717_1621473 chr2RHet_1545717_1605712;chr2RHet_1605787_1605870;chr2RHet_1606049_1621473 chr2RHet_1605713_1605786;chr2RHet_1605871_1606048 chr2RHet_1545666_1545716;chr2RHet_1621474_1621573 57.73 57.14 63.64 8.00 60.00 63.64 57.14 52.94 54.17 NA NA 78.26 88.89 66.67 66.67 41.67 36.36 80.00 60.00 80.95 NA 80.00 36.36 47.06 36.36 60.00 14.29 11.76 46.15 55.56 87.50 63.64 66.67 68.18 75.00 22.22 55.56 66.67 55.56 43.75 40.00 61.11 44.44 80.00 60.00 56.25 58.33 75.00 57.14 45.45 58.33 60.00 55.56 75.00 70.00 55.56 39.13 50.00 K jcn_only_AA Atg18,I_chr3L_8182683_8182941 chr3L + chr3L_8180294_8180578;chr3L_8180294_8180540 chr3L_8180294_8180586 chr3L_8180118_8180293;chr3L_8180587_8180676 1.41 1.37 1.30 3.97 0.00 0.00 4.17 0.85 0.68 5.26 3.64 0.85 1.61 1.59 0.00 0.00 1.41 3.28 2.53 0.81 2.47 1.46 0.85 0.00 1.54 0.00 1.18 0.00 1.96 3.30 2.02 0.00 2.74 0.00 4.62 0.00 1.71 0.93 0.00 4.13 0.00 1.97 1.89 1.04 2.60 4.62 0.00 2.33 0.72 0.00 4.44 2.38 7.27 1.49 0.96 1.49 1.00 1.11 K intron_retention gw,I_chr4_679135_681671 chr4 - chr4_673211_673271 chr4_673210_673211;chr4_673271_673272 chr4_672931_673210;chr4_673272_673459 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention growl chr3R + chr3R_229003_230190 chr3R_229002_229003;chr3R_230190_230191 chr3R_228731_229002;chr3R_230191_230361 0.53 0.19 0.19 0.82 0.22 0.24 0.27 0.42 0.19 0.93 0.52 0.37 0.54 0.79 0.34 1.05 0.22 1.08 0.22 0.80 0.75 2.65 0.45 0.36 0.57 0.36 0.83 1.16 0.33 0.61 0.87 0.34 0.65 0.88 0.40 0.38 0.53 0.15 0.52 0.64 1.16 0.55 0.53 0.76 1.26 0.80 0.94 1.22 0.43 0.68 0.48 0.00 0.28 0.55 0.74 0.93 0.00 0.50 K jcn_only_AD Meics chr3L - chr3L_13957114_13957254 chr3L_13957114_13957218 chr3L_13955947_13957113;chr3L_13957255_13957397 91.73 NA NA NA NA NA 95.00 88.46 86.36 NA NA 95.65 NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N cassette CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525393_1526333;chr3L_1525393_1527189 chr3L_1525393_1525641;chr3L_1525704_1527189,chr3L_1525704_1526333 chr3L_1525642_1525703 chr3L_1525293_1525392;chr3L_1527190_1527240 66.67 62.50 82.35 92.00 66.67 57.14 70.83 73.08 75.86 NA 41.67 32.65 92.31 60.00 58.82 88.24 71.43 58.33 NA 64.71 70.00 50.00 91.30 60.87 50.00 22.22 88.24 NA 47.06 66.67 76.92 80.00 63.64 69.57 63.64 72.73 61.11 66.67 66.67 53.33 52.94 57.50 70.00 84.62 71.43 61.11 69.23 87.50 71.43 61.11 72.00 80.00 84.62 54.55 60.00 66.67 72.73 75.00 K intron_retention I_chr3R_11826508_11826910,GATAe chr3R + chr3R_11843929_11843986 chr3R_11843928_11843929;chr3R_11843986_11843987 chr3R_11843433_11843928;chr3R_11843987_11844317 90.00 90.91 91.67 75.00 100.00 100.00 95.00 94.74 88.64 88.89 61.54 84.62 96.55 92.31 85.00 83.33 90.91 89.47 90.48 89.47 88.89 80.00 90.00 100.00 NA 90.00 91.67 NA 66.67 100.00 92.86 NA 53.85 92.00 92.31 88.89 80.00 90.00 94.74 80.00 NA 93.55 92.31 100.00 NA NA NA 75.00 92.86 NA 78.57 88.89 NA NA 86.36 NA NA NA K jcn_only_AD CG10365,I_chr3R_19549381_19554106,I_chr3R_19554176_19554388 chr3R + chr3R_19549452_19554388;chr3R_19549381_19554388 chr3R_19549425_19554388 chr3R_19554389_19554488;chr3R_19549281_19549380 3.85 6.67 2.70 2.38 4.55 3.70 6.52 0.00 5.08 0.00 4.35 8.57 NA 4.17 0.00 2.38 0.00 0.00 5.26 9.43 4.35 NA 4.26 0.00 3.85 2.78 0.00 NA 12.50 2.38 5.88 9.09 2.44 6.06 0.00 NA 6.06 0.00 0.00 3.17 4.65 6.15 8.33 8.33 5.41 7.02 0.00 2.82 6.90 8.00 0.00 0.00 NA 0.00 2.70 0.00 NA 14.29 K alternative_donor gish chr3R + chr3R_12100598_12100709 chr3R_12100604_12100709 chr3R_12100710_12100891;chr3R_12100535_12100597 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.95 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 97.44 100.00 100.00 100.00 97.50 K jcn_only_AA pgant5,I_chr2L_5079575_5093241 chr2L - chr2L_5092899_5093444 chr2L_5092902_5093444 chr2L_5093445_5093575;chr2L_5092875_5092898 20.89 NA NA NA NA NA NA 32.00 12.50 NA NA NA NA 19.05 NA 22.73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG12075 chrX + chrX_8763942_8764009 chrX_8763941_8763942;chrX_8764009_8764010 chrX_8763283_8763941;chrX_8764010_8766060 22.08 15.38 NA NA NA NA NA 35.29 22.73 NA NA 36.36 NA NA 30.77 41.67 NA NA NA 20.00 NA NA 13.33 38.46 NA NA NA NA NA NA 54.55 NA 11.11 13.33 NA NA 44.44 NA 21.43 25.00 NA 16.00 25.00 NA NA 18.75 NA 0.00 25.93 12.50 15.38 NA NA NA NA NA NA NA K alternative_donor CG2767,RI_chr3R_3832687_3833066 chr3R - chr3R_3832687_3833066 chr3R_3832687_3833053 chr3R_3832587_3832686;chr3R_3833067_3833166 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 96.77 98.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 97.14 100.00 96.88 100.00 97.50 100.00 97.87 100.00 97.96 100.00 98.51 100.00 100.00 100.00 100.00 100.00 97.56 98.44 100.00 100.00 100.00 96.30 100.00 97.30 100.00 100.00 98.25 99.03 K intron_retention CG3635 chr2L + chr2L_22182586_22182737 chr2L_22182585_22182586;chr2L_22182737_22182738 chr2L_22182517_22182585;chr2L_22182738_22183329 38.67 47.06 38.89 62.96 38.46 46.15 61.11 51.35 44.26 NA 41.67 34.29 26.32 37.50 50.00 56.25 33.33 44.44 35.71 45.16 41.67 23.81 41.18 53.85 38.89 37.50 45.83 NA NA NA 16.52 20.00 21.43 30.30 29.41 46.15 28.57 40.00 16.67 31.82 NA 45.95 44.00 46.67 NA 20.00 16.00 14.29 45.00 36.84 38.24 42.11 NA 31.25 40.00 33.33 30.00 31.25 K alternative_donor CG16817 chr3R + chr3R_5504371_5504441 chr3R_5504387_5504441 chr3R_5504442_5504698;chr3R_5504284_5504370 0.63 0.82 0.53 0.78 0.49 0.59 0.44 0.70 0.55 0.00 0.26 0.69 0.65 0.40 0.64 0.46 0.24 0.33 0.34 0.63 0.44 1.29 0.92 0.84 0.52 0.73 0.87 1.44 1.47 0.70 0.60 1.28 0.70 0.60 1.21 0.90 0.92 0.73 0.58 1.31 0.47 0.42 0.72 0.53 1.34 0.57 0.18 0.34 0.80 0.56 0.83 0.79 0.60 0.47 0.30 0.76 0.43 1.25 K alternative_donor glo,I_chr3R_7644679_7644739,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7644683_7644932;chr3R_7644683_7644739;chr3R_7644683_7644908;chr3R_7644683_7644743 chr3R_7644683_7644880 chr3R_7644583_7644682;chr3R_7644933_7644980 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6501632_6502052;chr2R_6501632_6502037 chr2R_6501632_6502058 chr2R_6501448_6501631;chr2R_6502059_6503753 0.00 0.59 0.00 0.79 0.00 0.00 1.89 0.00 0.35 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.54 0.00 1.79 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.65 0.97 0.00 0.00 0.00 0.00 0.00 0.00 2.63 K intron_retention Tsc1 chr3R + chr3R_19957892_19957978 chr3R_19957891_19957892;chr3R_19957978_19957979 chr3R_19956860_19957891;chr3R_19957979_19959170 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.28 100.00 100.00 100.00 95.83 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 96.88 97.87 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Mmp2,F_chr2R_5549824_5554869 chr2R - chr2R_5502478_5502867 chr2R_5502477_5502478;chr2R_5502867_5502868 chr2R_5502332_5502477;chr2R_5502868_5503008 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 4.55 0.00 0.00 NA NA 0.00 0.00 0.00 2.70 0.00 0.00 10.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 6.45 4.88 10.34 0.00 0.00 12.50 0.00 6.25 0.00 2.94 0.00 0.00 0.00 0.00 K intron_retention CG12112,CG12111 chrX - chrX_8453613_8453685 chrX_8453612_8453613;chrX_8453685_8453686 chrX_8453459_8453612;chrX_8453686_8453876 0.00 0.00 0.00 1.23 0.00 0.00 0.65 1.25 1.45 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.53 0.00 0.00 1.49 0.00 0.00 0.00 0.00 3.33 2.33 0.00 1.92 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 1.09 0.65 0.00 0.91 0.00 1.06 0.00 0.00 0.61 2.70 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.72 K intron_retention fal,I_chr3L_19289660_19290145 chr3L + chr3L_19291320_19291377 chr3L_19291319_19291320;chr3L_19291377_19291378 chr3L_19290619_19291319;chr3L_19291378_19291573 0.00 0.00 0.00 8.82 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 3.85 0.00 6.82 0.00 0.00 0.00 1.67 0.00 0.00 3.12 3.57 8.00 0.00 0.00 NA NA NA 0.00 0.00 NA 4.08 0.00 20.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 NA 0.00 0.00 0.00 1.89 0.00 6.25 0.00 NA 0.00 0.00 0.00 4.35 5.00 K intron_retention CG17233,RI_chr3L_20232898_20232962 chr3L - chr3L_20228778_20229533 chr3L_20228777_20228778;chr3L_20229533_20229534 chr3L_20228602_20228777;chr3L_20229534_20231010 63.64 62.50 64.29 58.62 55.00 48.00 67.86 70.59 54.55 73.33 55.56 46.30 73.33 65.00 51.28 94.12 73.33 53.33 50.00 54.22 64.00 90.32 55.36 52.78 61.54 67.86 65.85 52.78 79.07 61.90 66.67 86.11 75.51 56.00 61.11 60.00 57.63 54.84 66.15 65.62 87.50 53.70 72.22 63.64 80.70 68.09 63.16 77.78 56.25 74.36 58.54 55.00 64.71 56.25 64.29 62.86 75.68 76.19 K jcn_only_AA F_chr3R_7396835_7396923,wkd chr3R + chr3R_7409279_7409422 chr3R_7409279_7409409 chr3R_7409036_7409278;chr3R_7409423_7409787 1.41 0.00 0.00 0.00 2.00 2.33 0.00 0.00 0.00 2.63 6.45 1.18 1.25 0.00 0.00 0.00 0.00 0.00 1.45 1.79 0.00 1.35 1.39 4.92 0.00 1.75 3.12 0.00 2.78 5.26 5.56 1.96 0.00 0.00 2.86 1.64 1.47 1.96 0.00 3.41 1.54 1.71 2.08 1.85 1.41 0.00 4.00 1.11 2.68 0.00 2.94 2.44 0.00 0.00 2.15 0.00 5.77 1.35 K intron_retention Spase18-21 chr3R + chr3R_2484903_2484963 chr3R_2484902_2484903;chr3R_2484963_2484964 chr3R_2484725_2484902;chr3R_2484964_2485250 1.75 2.55 2.86 1.22 0.00 1.14 2.81 1.04 1.42 1.35 1.36 1.19 0.92 0.53 0.77 2.45 0.00 2.31 1.75 1.78 2.01 5.00 3.24 3.16 2.88 1.19 2.46 6.25 2.86 1.15 2.88 0.00 1.31 1.13 1.37 2.08 2.31 2.67 2.41 1.57 1.83 1.62 0.00 1.68 2.06 2.33 3.24 1.25 1.50 3.08 2.40 3.08 1.21 1.05 1.57 2.27 3.68 1.07 K alternative_donor CG12576,RI_chrX_21878289_21882347,I_chrX_21882735_21882809,I_chrX_21882735_21883407,I_chrX_21882735_21883467,I_chrX_21882735_21883620,I_chrX_21882735_21883714 chrX - chrX_21882735_21882809;chrX_21882735_21883714;chrX_21882735_21883750 chrX_21882735_21883467 chrX_21882635_21882734;chrX_21883751_21883814 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 2.13 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CSN8,I_chr2L_8365282_8365388,I_chr2L_8367210_8367311 chr2L + chr2L_8364980_8365152 chr2L_8364980_8365039;chr2L_8365105_8365152 chr2L_8365040_8365104 chr2L_8364870_8364979;chr2L_8365153_8365281 96.88 94.44 96.77 91.84 90.91 100.00 97.83 96.36 94.74 100.00 87.50 93.85 96.30 97.06 94.12 96.49 96.00 92.86 96.88 92.13 100.00 84.09 97.96 100.00 100.00 86.96 100.00 100.00 81.82 93.55 89.19 92.68 97.92 96.23 92.11 100.00 100.00 96.97 96.88 97.56 93.33 98.25 95.45 93.75 96.88 98.68 94.83 96.88 94.92 92.00 100.00 96.88 100.00 97.44 97.22 97.96 97.01 98.48 K intron_retention Crag,I_chrX_8487355_8487512,I_chrX_8494280_8494352 chrX + chrX_8486625_8487512 chrX_8486624_8486625;chrX_8487512_8487513 chrX_8486279_8486624;chrX_8487513_8487612 0.00 0.00 0.00 2.86 0.00 2.22 3.33 2.44 0.00 0.00 0.00 8.51 0.00 0.00 1.96 0.00 0.00 0.00 0.00 2.13 0.00 9.46 0.00 0.00 0.00 0.00 2.56 NA 4.55 2.70 0.00 0.00 5.08 0.00 0.00 0.00 1.82 0.00 1.41 3.57 0.00 1.19 0.00 3.45 0.00 0.00 0.00 3.30 0.00 0.00 0.00 0.00 0.00 0.00 2.27 NA 0.00 0.00 K cassette Hrb98DE,I_chr3R_24425722_24428493,I_chr3R_24426291_24426781,I_chr3R_24426737_24426805,RI_chr3R_24429041_24431183 chr3R + chr3R_24425722_24428493 chr3R_24425722_24426427;chr3R_24426918_24428493 chr3R_24426428_24426917 chr3R_24425622_24425721;chr3R_24428494_24428593 100.00 100.00 100.00 100.00 100.00 100.00 99.76 100.00 100.00 100.00 99.17 99.83 100.00 100.00 100.00 99.75 100.00 99.65 100.00 100.00 100.00 100.00 99.85 99.84 100.00 100.00 100.00 100.00 100.00 99.74 100.00 100.00 99.72 100.00 100.00 100.00 99.84 100.00 100.00 100.00 100.00 99.86 100.00 99.70 100.00 99.75 100.00 99.71 99.84 99.80 100.00 100.00 100.00 99.70 100.00 100.00 100.00 99.65 K jcn_only_AD CG5953,snoRNA:Me28S-C1237 chr2L - chr2L_16528440_16532720;chr2L_16528440_16532458 chr2L_16528440_16532707 chr2L_16527390_16528439;chr2L_16532721_16532862 15.19 NA NA NA NA NA NA 8.70 7.14 NA 21.74 0.00 NA NA NA 2.94 NA NA NA 16.67 6.25 NA NA NA NA NA NA NA NA NA NA NA NA 20.00 8.00 NA NA NA 15.00 NA NA 17.95 NA NA NA 13.89 25.00 15.62 15.38 NA NA NA NA 20.83 NA 4.55 NA 23.08 K alternative_acceptor CG5746 chr3R - chr3R_20174283_20174383 chr3R_20174286_20174383 chr3R_20174384_20174495;chr3R_20173869_20174282 97.50 93.88 100.00 100.00 96.77 97.14 100.00 98.21 97.18 96.43 100.00 98.44 97.50 100.00 95.12 96.55 100.00 91.11 97.37 97.83 96.55 92.11 100.00 100.00 97.14 97.56 100.00 97.06 97.30 95.92 96.88 100.00 96.08 96.49 95.83 97.83 98.04 97.50 98.46 98.36 89.29 98.67 96.15 97.14 87.10 97.22 100.00 96.23 98.55 94.29 96.30 100.00 100.00 100.00 100.00 100.00 100.00 90.57 K intron_retention I_chr3L_1494947_1496080,pUf68,RI_chr3L_1499880_1501350 chr3L - chr3L_1498231_1498292 chr3L_1498230_1498231;chr3L_1498292_1498293 chr3L_1496858_1498230;chr3L_1498293_1498796 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 1.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 1.33 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14782,mei-38,noncoding_21360 chrX + chrX_1372263_1375040 chrX_1372262_1372263;chrX_1375040_1375041 chrX_1371409_1372262;chrX_1375041_1375343 73.60 64.36 78.57 81.51 67.69 75.82 77.00 73.60 74.15 86.05 75.86 75.84 71.43 76.39 75.00 85.58 69.35 81.48 77.27 77.38 75.36 90.22 70.71 64.06 70.24 70.16 76.11 89.25 77.89 71.03 84.30 73.53 75.00 73.60 69.30 81.98 51.11 59.18 71.43 67.61 67.57 70.98 70.13 68.75 68.12 70.71 68.35 71.96 76.06 72.47 71.43 73.26 76.85 76.60 74.55 67.59 81.58 78.05 K intron_retention egr,I_chr2R_5970832_5970930,I_chr2R_5970999_5971058 chr2R + chr2R_5970640_5970766 chr2R_5970639_5970640;chr2R_5970766_5970767 chr2R_5970535_5970639;chr2R_5970767_5970831 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.39 0.00 0.69 0.00 0.00 0.00 0.57 0.00 0.82 0.63 0.99 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20334199_20334626 chr2L_20334199_20334620 chr2L_20334099_20334198;chr2L_20334627_20334726 100.00 100.00 98.18 98.15 96.30 97.56 100.00 98.33 98.78 100.00 97.14 98.57 100.00 100.00 100.00 100.00 100.00 97.22 97.30 98.98 100.00 99.42 98.48 100.00 100.00 100.00 97.92 90.91 98.73 98.77 100.00 98.04 99.38 98.51 100.00 98.46 100.00 100.00 100.00 99.25 97.75 100.00 100.00 98.46 98.85 97.50 100.00 99.21 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CkIIbeta,I_chrX_11686847_11687475,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11686979_11687475 chrX_11686978_11686979;chrX_11687475_11687476 chrX_11686957_11686978;chrX_11687476_11687551 76.33 NA NA 82.35 NA NA 75.00 76.47 68.97 NA NA 92.86 80.00 75.00 69.23 95.45 75.00 NA 73.33 75.00 NA NA NA NA NA NA NA NA NA NA 76.92 NA NA 81.25 NA NA NA NA NA 100.00 NA 69.57 88.89 NA NA NA 80.00 NA 76.19 NA NA NA NA NA 69.23 NA NA NA K jcn_only_AD I_chr2L_19388570_19389922,CG17544 chr2L - chr2L_19393657_19398346;chr2L_19393657_19398334 chr2L_19393657_19398350 chr2L_19393497_19393656;chr2L_19398351_19398401 30.63 32.73 28.42 36.56 38.71 38.68 30.24 32.45 30.28 26.76 31.94 33.91 25.86 34.98 21.15 29.82 27.53 33.33 27.74 33.21 30.56 30.63 33.74 32.13 25.49 32.79 33.83 23.00 18.86 31.27 28.89 28.15 24.24 29.22 31.23 32.67 32.26 23.57 25.91 36.04 24.58 28.38 32.13 34.09 30.82 33.42 31.79 27.45 32.73 29.69 28.46 29.79 28.31 33.66 35.03 33.65 27.37 27.87 K intron_retention Stat92E,I_chr3R_16367780_16376442,I_chr3R_16367780_16377802,I_chr3R_16367815_16368548,att-ORFB chr3R - chr3R_16367815_16376442 chr3R_16367814_16367815;chr3R_16376442_16376443 chr3R_16367715_16367814;chr3R_16376443_16376542 0.00 0.00 0.00 0.00 0.00 0.00 11.11 4.44 5.80 0.00 NA 3.12 2.70 0.00 5.00 4.65 0.00 2.27 0.00 2.86 0.00 12.00 0.00 0.00 0.00 0.00 8.00 0.00 0.00 6.67 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 5.56 0.00 NA 0.00 0.00 0.00 NA NA NA 6.06 2.63 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K alternative_donor Mgat2,I_chr3R_25845406_25845472,I_chr3R_25845406_25846373 chr3R - chr3R_25845406_25847371;chr3R_25845406_25846373;chr3R_25845406_25847670 chr3R_25845406_25845472 chr3R_25845317_25845405;chr3R_25847671_25847898 7.14 5.88 5.56 8.70 16.67 6.67 11.11 11.76 7.69 20.00 11.11 12.50 12.50 7.69 9.09 5.88 12.50 8.33 6.25 10.34 10.00 31.82 4.17 4.55 7.69 7.14 12.50 6.67 8.70 5.88 5.26 0.00 7.14 4.76 7.69 4.76 5.88 7.69 5.00 7.14 5.56 7.14 9.09 4.76 5.56 5.56 7.69 3.45 3.85 8.33 4.35 8.33 0.00 7.69 5.26 7.69 10.00 7.14 N cassette CG18522,CG18519 chr3R - chr3R_11361241_11362757 chr3R_11361241_11361349;chr3R_11362279_11362757 chr3R_11361350_11362278 chr3R_11361007_11361240;chr3R_11362758_11363069 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor spi,I_chr2L_19569183_19577185,I_chr2L_19569227_19572142,I_chr2L_19569227_19577173 chr2L - chr2L_19571768_19572503 chr2L_19571768_19572499 chr2L_19571572_19571767;chr2L_19572504_19572512 93.75 93.94 92.86 87.50 NA 100.00 93.75 92.31 95.00 87.50 NA 83.87 NA 81.82 92.86 95.65 NA 100.00 100.00 88.89 100.00 100.00 95.31 94.00 94.44 91.67 96.30 NA 91.67 86.21 86.36 95.24 95.45 94.44 89.47 92.00 93.75 93.94 93.75 97.37 85.71 88.89 90.91 95.65 94.74 95.65 94.64 96.55 88.24 90.32 91.38 100.00 NA 90.48 94.12 91.67 90.00 94.44 K intron_retention CG31619 chr2L + chr2L_21711411_21712768 chr2L_21711410_21711411;chr2L_21712768_21712769 chr2L_21711315_21711410;chr2L_21712769_21712966 3.03 2.67 4.84 3.03 3.03 3.03 6.56 1.87 4.22 0.00 NA 2.78 0.00 5.88 2.78 2.27 2.94 4.76 3.17 2.16 NA 6.49 1.65 2.04 8.47 5.26 4.17 6.67 6.90 3.70 7.45 8.57 2.15 2.94 3.77 8.11 2.84 2.44 1.75 3.31 6.82 2.72 3.33 2.72 5.77 1.23 3.17 4.49 2.61 5.71 3.19 0.00 2.70 5.26 2.27 3.45 0.00 2.15 K intron_retention CG11790 chr3R + chr3R_20874326_20874386 chr3R_20874325_20874326;chr3R_20874386_20874387 chr3R_20874164_20874325;chr3R_20874387_20874512 0.00 0.00 0.00 2.27 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 N jcn_only_AA CG6199 chr3L - chr3L_11192493_11195314 chr3L_11195174_11195314 chr3L_11195315_11195440;chr3L_11192366_11192492 0.00 0.00 0.00 0.00 0.00 0.00 10.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chrX_7172561_7252693,CG1677,I_chrX_7178792_7252693,Atg5 chrX - chrX_7216816_7217190 chrX_7216815_7216816;chrX_7217190_7217191 chrX_7216590_7216815;chrX_7217191_7217296 0.00 0.00 0.00 1.52 0.00 0.00 1.67 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CtBP chr3R + chr3R_8842742_8845063 chr3R_8842741_8842742;chr3R_8845063_8845064 chr3R_8842716_8842741;chr3R_8845064_8845536 63.16 54.17 55.00 59.46 80.00 70.83 78.57 66.67 70.21 NA 56.67 81.25 73.08 58.82 66.67 64.71 63.16 47.83 61.54 64.58 50.00 70.00 61.90 72.73 69.23 63.16 58.33 77.14 66.67 59.26 46.15 52.17 46.88 64.71 53.33 70.00 71.43 60.00 66.67 62.50 63.16 63.04 65.00 76.47 63.16 42.31 38.46 39.22 59.57 69.23 72.22 66.67 77.78 60.00 48.15 72.73 61.11 42.86 K intron_retention trio,I_chr3L_999683_1009321 chr3L - chr3L_1034066_1034762 chr3L_1034065_1034066;chr3L_1034762_1034763 chr3L_1033650_1034065;chr3L_1034763_1034875 22.22 21.05 13.33 34.78 NA 23.08 33.33 29.17 30.00 NA NA 31.25 29.41 29.41 27.27 37.04 20.00 36.36 17.65 21.05 NA 56.25 13.85 13.04 12.50 NA 20.00 40.00 60.00 15.62 26.32 NA 50.00 20.00 22.22 13.64 20.00 10.53 25.00 19.35 NA 30.00 22.22 11.11 NA 36.36 22.22 38.46 14.29 NA 20.00 0.00 NA NA 24.14 NA NA NA K intron_retention CG8675,Fim chrX - chrX_17181224_17181288 chrX_17181223_17181224;chrX_17181288_17181289 chrX_17180970_17181223;chrX_17181289_17181567 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 1.79 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention cana,cana_CG33695 chr2L + chr2L_11277376_11277440 chr2L_11277375_11277376;chr2L_11277440_11277441 chr2L_11277255_11277375;chr2L_11277441_11277652 0.00 NA NA 0.00 NA NA 0.00 0.00 5.00 0.00 NA 2.94 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 7.41 0.00 0.00 NA 12.90 7.14 0.00 0.00 0.00 NA 7.69 0.00 11.11 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA K jcn_only_AD Kdm4A chr2R - chr2R_3811118_3811191 chr2R_3811118_3811173 chr2R_3810414_3811117;chr2R_3811192_3812037 100.00 NA NA 95.45 NA NA NA NA 96.30 NA NA 96.15 NA NA NA NA NA NA NA 95.45 NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA 95.24 100.00 NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 K intron_retention CG17683,I_chr2R_18774_18869 chr2R + chr2R_19696_19753 chr2R_19695_19696;chr2R_19753_19754 chr2R_19542_19695;chr2R_19754_20232 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 96.88 100.00 100.00 96.55 97.06 92.86 100.00 96.00 100.00 100.00 93.75 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 97.96 94.12 91.67 91.30 100.00 100.00 96.55 94.74 100.00 100.00 K intron_retention spin,I_chr2R_12013288_12013847 chr2R + chr2R_12013288_12019046 chr2R_12013287_12013288;chr2R_12019046_12019047 chr2R_12013188_12013287;chr2R_12019047_12019404 1.30 1.30 2.92 4.03 4.05 2.36 3.21 3.70 3.85 0.00 3.11 3.27 5.88 3.30 2.26 5.00 2.94 3.77 4.48 2.82 2.43 1.10 0.98 0.84 0.00 2.46 0.83 1.58 1.77 0.86 5.24 0.00 0.50 2.93 0.73 0.27 0.46 0.00 0.99 0.48 0.00 2.93 3.66 0.69 0.00 0.00 0.00 0.00 3.00 1.69 0.44 1.24 0.00 0.00 2.32 0.00 0.00 0.00 K intron_retention Smc5,I_chr3L_21566234_21566275 chr3L + chr3L_21562994_21563056 chr3L_21562993_21562994;chr3L_21563056_21563057 chr3L_21562621_21562993;chr3L_21563057_21563235 0.00 6.67 0.00 0.00 NA NA 7.69 0.00 0.00 NA 0.00 6.25 0.00 0.00 NA 3.33 NA NA 0.00 2.08 NA 0.00 3.57 9.09 0.00 0.00 7.41 NA NA NA NA NA 11.11 5.26 0.00 NA 0.00 NA 0.00 0.00 NA 3.85 NA NA NA NA 0.00 NA 2.86 0.00 4.35 7.69 NA NA 3.23 NA 0.00 NA K jcn_only_AA CG9674,I_chr3L_16785706_16785748,I_chr3L_16793055_16800660 chr3L - chr3L_16785687_16785748 chr3L_16785706_16785748 chr3L_16785749_16785848;chr3L_16785606_16785686 0.18 1.53 0.34 0.23 0.77 0.38 0.41 0.21 0.00 0.88 0.54 0.51 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.18 1.36 0.29 0.00 0.00 0.00 0.47 0.00 0.39 0.00 0.00 0.29 0.00 0.22 0.22 0.00 0.47 0.00 0.39 0.49 0.62 0.00 0.00 0.46 0.40 0.00 0.00 0.00 1.17 0.45 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.57 K intron_retention Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21131464_21132033 chr2L_21131463_21131464;chr2L_21132033_21132034 chr2L_21131397_21131463;chr2L_21132034_21132685 21.91 NA 20.00 25.00 NA NA 17.86 14.29 10.53 NA NA 31.58 NA NA NA NA NA NA NA 23.81 NA 16.67 25.00 7.69 NA NA NA 29.17 NA NA 7.14 NA NA 28.57 NA 30.77 NA NA 29.41 25.00 NA 10.53 NA 15.38 NA NA NA NA 17.39 NA 33.33 NA NA NA NA NA NA NA K intron_retention I_chrX_8993495_8994545,Bx42 chrX - chrX_8999991_9000257 chrX_8999990_8999991;chrX_9000257_9000258 chrX_8999430_8999990;chrX_9000258_9000760 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9422,I_chr2R_2584435_2585553 chr2R + chr2R_2579742_2579797 chr2R_2579741_2579742;chr2R_2579797_2579798 chr2R_2579625_2579741;chr2R_2579798_2580104 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA NA 6.67 0.00 0.00 0.00 NA 0.00 NA 26.09 0.00 0.00 NA NA 7.32 6.45 16.67 0.00 4.35 0.00 1.64 NA NA 0.00 0.00 0.00 0.00 0.00 7.32 0.00 NA 0.00 2.44 5.45 0.00 3.77 0.00 5.77 0.00 0.00 0.00 0.00 9.52 0.00 0.00 0.00 K intron_retention Tango5,noncoding_22970,I_chrX_10659836_10661185 chrX - chrX_10655893_10655947 chrX_10655892_10655893;chrX_10655947_10655948 chrX_10655611_10655892;chrX_10655948_10656235 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.57 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11403,I_chrX_1132012_1132060 chrX - chrX_1131741_1131798 chrX_1131740_1131741;chrX_1131798_1131799 chrX_1131017_1131740;chrX_1131799_1131996 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 11.11 NA NA 20.00 NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 0.00 0.00 NA NA NA NA NA NA NA K intron_retention CG3523 chr2L + chr2L_3067328_3067388 chr2L_3067327_3067328;chr2L_3067388_3067389 chr2L_3067184_3067327;chr2L_3067389_3067982 0.35 0.36 0.55 0.45 0.25 0.55 0.47 0.51 0.45 0.00 0.24 0.47 0.14 0.57 0.65 0.51 0.54 0.45 0.34 0.34 0.41 0.34 0.31 0.31 0.45 0.28 1.21 2.21 0.21 0.21 0.07 0.36 0.20 0.43 0.00 0.60 0.25 0.21 0.18 0.39 0.33 0.33 0.23 0.45 0.17 0.53 0.44 0.00 0.55 0.36 0.21 0.26 0.48 0.29 0.32 0.40 0.26 0.35 K intron_retention Dhc64C chr3L - chr3L_4811670_4812056 chr3L_4811669_4811670;chr3L_4812056_4812057 chr3L_4811552_4811669;chr3L_4812057_4812124 1.06 NA 11.11 14.29 0.00 NA 3.85 7.69 2.82 NA 9.09 5.00 23.81 0.00 0.00 2.13 8.33 3.85 3.23 5.26 0.00 0.00 5.00 0.00 0.00 9.09 5.26 10.00 NA 0.00 4.35 NA 0.00 4.44 0.00 0.00 4.35 NA 0.00 15.15 0.00 9.76 0.00 0.00 0.00 0.00 0.00 8.82 0.00 0.00 0.00 4.55 NA NA 0.00 NA 0.00 0.00 K intron_retention Pmi,PGRP-LD chr3L + chr3L_5774098_5774650 chr3L_5774097_5774098;chr3L_5774650_5774651 chr3L_5773937_5774097;chr3L_5774651_5774822 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 92.86 NA 100.00 88.24 100.00 NA NA 100.00 NA NA 87.50 100.00 NA NA NA 100.00 NA 100.00 100.00 NA 100.00 NA NA NA NA NA 90.00 100.00 87.50 100.00 90.91 91.67 NA NA 90.91 NA 90.00 100.00 NA K alternative_donor Dsp1,I_chrX_16231287_16231413 chrX + chrX_16227752_16228333;chrX_16228273_16228333;chrX_16227804_16228333;chrX_16227797_16228333 chrX_16227677_16228333 chrX_16228334_16228446;chrX_16227667_16227676 5.88 6.90 3.45 7.32 9.52 16.00 6.67 10.17 4.17 5.56 5.56 6.45 2.70 6.06 7.14 8.06 3.57 3.70 7.14 9.72 10.53 7.69 1.96 3.45 3.23 4.17 2.56 0.00 8.70 3.33 0.00 14.29 16.67 14.29 0.00 0.00 6.67 5.88 5.88 8.16 8.33 6.90 3.33 2.86 0.00 5.26 4.76 7.14 6.35 14.81 0.00 3.85 0.00 6.67 8.82 4.76 5.00 6.67 K jcn_only_AD CG6353 chr3R - chr3R_17488466_17488533 chr3R_17488466_17488531 chr3R_17488441_17488465;chr3R_17488534_17488585 100.00 NA 97.22 100.00 100.00 100.00 100.00 100.00 100.00 95.00 94.12 100.00 96.15 95.83 100.00 100.00 NA 100.00 100.00 98.95 100.00 91.43 100.00 NA NA 95.24 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 NA 97.06 95.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 96.30 100.00 97.14 100.00 100.00 100.00 97.44 100.00 100.00 96.77 100.00 98.65 K alternative_donor Tango5,noncoding_22970,I_chrX_10659836_10661185 chrX - chrX_10656468_10658202;chrX_10656468_10658117 chrX_10656468_10658389 chrX_10656442_10656467;chrX_10658390_10658400 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor smid,I_chr3L_7375166_7375310,I_chr3L_7375435_7375508 chr3L + chr3L_7375425_7375486 chr3L_7375435_7375486 chr3L_7375487_7375574;chr3L_7375335_7375424 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 98.81 100.00 100.00 98.44 100.00 96.00 100.00 98.46 100.00 100.00 100.00 98.78 100.00 100.00 100.00 100.00 100.00 97.22 98.00 100.00 100.00 100.00 100.00 100.00 98.00 100.00 96.00 100.00 98.36 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 98.48 100.00 100.00 97.30 95.83 100.00 100.00 96.88 97.14 100.00 K alternative_donor CG14939,RI_chr2L_11812683_11813150 chr2L - chr2L_11812683_11813633;chr2L_11812683_11813724 chr2L_11812683_11813150 chr2L_11812583_11812682;chr2L_11813725_11813792 4.00 4.35 4.35 4.17 0.00 3.33 3.92 3.45 2.63 0.00 3.92 2.70 0.00 4.00 2.38 2.04 6.06 2.78 2.27 3.37 2.00 6.67 11.11 8.33 20.00 2.86 7.69 18.18 6.25 10.00 2.27 5.00 13.04 3.80 NA 20.00 3.33 6.25 5.56 6.67 12.50 3.85 2.78 0.00 3.33 12.50 9.09 4.55 2.78 9.09 16.67 5.56 NA NA 2.38 NA 0.00 5.26 K intron_retention CG7956 chr3R + chr3R_17348755_17348809 chr3R_17348754_17348755;chr3R_17348809_17348810 chr3R_17348526_17348754;chr3R_17348810_17349230 0.00 0.00 0.65 0.79 0.89 0.88 0.57 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 1.94 1.10 0.00 0.00 1.57 0.98 0.89 0.99 1.43 0.00 0.00 1.30 1.09 0.00 0.00 0.00 0.00 1.68 0.00 3.03 0.00 1.15 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention PRL-1,I_chr2L_16247385_16247503,I_chr2L_16250028_16250080 chr2L - chr2L_16247385_16248601 chr2L_16247384_16247385;chr2L_16248601_16248602 chr2L_16247285_16247384;chr2L_16248602_16248768 1.07 1.33 0.00 1.49 0.00 1.14 1.36 1.41 2.00 0.00 1.83 1.11 3.40 1.54 1.44 1.24 0.00 1.09 0.44 0.89 1.64 2.27 1.67 2.04 1.71 0.57 1.53 1.98 0.00 0.00 0.96 0.00 1.69 1.70 0.78 1.47 0.00 1.32 0.00 1.00 1.23 0.81 1.28 0.00 0.00 0.00 0.81 0.00 1.07 3.25 0.88 0.00 0.84 0.00 1.77 0.00 0.00 0.00 K intron_retention drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9389757 chr2R_9389596_9389597;chr2R_9389757_9389758 chr2R_9389497_9389596;chr2R_9389758_9389851 97.87 95.00 92.31 97.87 93.33 92.86 97.87 96.77 98.39 100.00 100.00 97.87 100.00 100.00 96.67 97.96 100.00 95.45 97.56 92.59 100.00 100.00 94.44 100.00 100.00 96.15 100.00 100.00 100.00 100.00 90.32 100.00 98.00 98.21 95.24 100.00 100.00 100.00 95.00 96.55 100.00 100.00 96.00 97.50 92.31 96.55 96.88 100.00 97.14 100.00 96.88 92.00 100.00 100.00 97.37 94.74 96.88 100.00 K intron_retention CG31635,I_chr2L_6639349_6639396,I_chr2L_6646948_6648945 chr2L - chr2L_6635407_6635652 chr2L_6635406_6635407;chr2L_6635652_6635653 chr2L_6634782_6635406;chr2L_6635653_6637024 11.43 NA NA NA NA NA NA NA 12.50 NA NA 35.71 NA NA 0.00 NA NA NA NA 12.50 NA NA NA 0.00 NA NA 6.25 14.29 NA NA NA NA NA NA NA NA 11.76 NA 17.65 NA NA 5.26 NA 0.00 11.11 NA 0.00 NA NA 13.64 NA NA NA NA NA NA NA NA K cassette DppIII,CG7352 chr3R + chr3R_4170206_4170814 chr3R_4170206_4170530;chr3R_4170746_4170814 chr3R_4170531_4170745 chr3R_4170198_4170205;chr3R_4170815_4171121 45.74 44.62 30.51 43.31 40.00 43.55 53.27 44.35 45.65 41.67 59.09 45.74 65.62 49.15 39.47 38.46 38.46 57.69 34.25 65.66 57.50 44.00 41.77 57.14 30.56 15.79 67.69 57.32 40.00 50.00 42.67 61.76 55.36 40.71 44.23 44.68 48.57 49.09 58.82 52.00 47.37 38.84 34.38 46.30 51.28 50.98 46.51 46.88 31.21 46.81 62.67 41.67 42.86 56.76 39.73 38.71 57.50 51.06 K jcn_only_AA CG10600,I_chr2L_18836445_18836522,RI_chr2L_18838793_18838882 chr2L - chr2L_18838793_18838882 chr2L_18838796_18838882 chr2L_18838883_18838982;chr2L_18838693_18838792 98.36 100.00 98.33 98.75 100.00 98.15 98.63 100.00 99.19 100.00 97.92 97.52 97.62 97.73 93.18 98.51 100.00 97.62 100.00 100.00 100.00 97.12 96.47 100.00 100.00 100.00 100.00 100.00 97.30 98.61 97.44 96.77 98.98 100.00 100.00 98.48 98.90 96.15 97.18 98.26 97.50 98.28 100.00 98.44 100.00 97.96 100.00 100.00 98.36 93.48 97.33 96.97 97.44 91.43 96.72 96.88 92.86 95.74 K intron_retention Orc1,I_chr2R_3415482_3418090 chr2R - chr2R_3410779_3410841 chr2R_3410778_3410779;chr2R_3410841_3410842 chr2R_3409905_3410778;chr2R_3410842_3411720 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 4.35 0.00 NA 7.41 NA NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11009,I_chr3L_12844823_12845526,I_chr3L_12845441_12845526 chr3L + chr3L_12844823_12845331 chr3L_12844822_12844823;chr3L_12845331_12845332 chr3L_12844723_12844822;chr3L_12845332_12845377 0.00 0.00 5.13 0.00 0.00 0.00 12.50 4.17 6.35 0.00 0.00 0.00 3.03 0.00 2.38 2.33 0.00 0.00 3.70 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.64 1.92 0.00 0.00 0.00 0.00 0.00 2.00 1.85 3.12 0.00 0.00 0.00 0.00 0.00 2.17 8.70 0.00 0.00 2.86 NA 0.00 4.65 0.00 0.00 0.00 K intron_retention scu,RhoGAP16F chrX + chrX_17988788_17989117 chrX_17988787_17988788;chrX_17989117_17989118 chrX_17988615_17988787;chrX_17989118_17990486 57.73 63.64 NA NA 35.71 41.67 53.85 57.14 41.18 NA NA 33.33 NA 50.00 80.00 70.59 NA 90.00 NA 65.00 NA 63.64 50.00 54.55 NA NA 64.29 NA NA 50.00 47.37 NA NA NA NA NA 70.00 NA 58.33 64.71 NA 47.62 NA NA NA 60.00 NA 58.33 50.00 NA 66.67 NA NA NA 46.15 NA 58.33 NA K intron_retention CG8636 chrX - chrX_2504216_2504278 chrX_2504215_2504216;chrX_2504278_2504279 chrX_2503175_2504215;chrX_2504279_2504526 0.41 0.62 0.00 0.90 0.00 0.48 0.37 0.58 0.32 0.00 0.00 0.23 0.00 0.49 0.53 0.30 0.00 0.56 0.24 0.17 0.40 1.62 0.44 0.58 0.91 0.39 1.07 2.24 6.77 0.00 0.47 0.00 0.00 0.78 0.25 0.39 0.45 0.33 0.27 0.55 0.83 0.42 0.29 0.25 0.20 0.30 0.56 0.95 0.48 0.62 0.41 0.82 0.31 0.61 0.17 0.32 0.71 5.26 K jcn_only_AD scu,RhoGAP16F chrX + chrX_17988131_17989117;chrX_17987638_17989117;chrX_17988127_17989117 chrX_17987656_17989117 chrX_17989118_17990486;chrX_17987544_17987637 1.41 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 2.82 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 4.55 NA NA NA NA NA NA NA NA NA N alternative_donor CG17255,I_chrX_10366177_10366615,RI_chrX_10366177_10367270 chrX - chrX_10366177_10367360;chrX_10366177_10367201;chrX_10366177_10367458;chrX_10366177_10368085;chrX_10366177_10366615 chrX_10366177_10367270 chrX_10366077_10366176;chrX_10368086_10368118 5.41 7.69 2.60 6.84 3.85 6.25 8.51 6.61 8.57 6.56 5.08 6.62 4.17 7.06 6.06 5.88 2.70 3.28 7.07 5.65 3.70 3.28 9.33 7.06 4.44 3.30 8.22 6.78 2.94 8.33 2.35 1.69 4.86 9.84 4.41 3.12 5.41 5.36 4.76 4.69 4.41 8.72 7.58 5.56 3.64 3.61 3.12 3.12 8.57 4.44 7.32 10.53 2.94 9.52 4.67 8.33 6.06 2.56 K intron_retention hkl chr2L + chr2L_19047048_19047151 chr2L_19047047_19047048;chr2L_19047151_19047152 chr2L_19046215_19047047;chr2L_19047152_19047361 0.00 0.00 0.00 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 N jcn_only_AD CG31156,F_chr3R_18435204_18436237,EFI_chr3R_18436373_18436443 chr3R - chr3R_18435204_18436443 chr3R_18435204_18435694 chr3R_18435104_18435203;chr3R_18436444_18436543 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA 32.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA 0.00 0.00 NA K alternative_acceptor gcl,I_chr2R_4611970_4612145,I_chr2R_4614277_4614332 chr2R + chr2R_4611970_4614119 chr2R_4611970_4612145 chr2R_4611870_4611969;chr2R_4614120_4614231 0.00 NA NA 0.00 NA NA 10.00 5.26 0.00 NA NA 4.76 0.00 NA NA 4.55 NA 0.00 0.00 0.00 NA 5.88 0.00 NA NA 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 K alternative_donor Mtor,I_chr2R_7747557_7747819 chr2R + chr2R_7747557_7747819 chr2R_7747569_7747819 chr2R_7747820_7747919;chr2R_7747457_7747556 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.40 98.68 100.00 100.00 100.00 98.18 100.00 97.30 100.00 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.91 100.00 100.00 100.00 100.00 98.55 100.00 100.00 100.00 100.00 100.00 100.00 98.55 98.68 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2816013;chr2R_2816342_2816577;chr2R_2816779_2817459;chr2R_2817604_2817753 chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817460_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 50.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25318474_25319136;chr3R_25318474_25319163;chr3R_25318474_25319142;chr3R_25318474_25318925;chr3R_25318474_25318971;chr3R_25318474_25319004;chr3R_25318474_25319167 chr3R_25318474_25319093 chr3R_25318374_25318473;chr3R_25319168_25319224 12.81 7.66 22.46 18.83 9.38 15.90 15.87 1.90 9.52 6.12 21.84 18.38 13.61 21.36 13.18 19.31 12.81 15.15 12.78 15.96 27.59 9.56 9.25 7.54 12.07 20.50 6.53 10.14 17.43 9.03 19.18 15.74 30.33 14.81 14.13 10.09 4.57 9.60 8.43 15.49 38.46 12.80 18.18 9.97 24.21 19.28 7.96 37.06 11.06 8.42 8.91 10.19 11.99 12.77 14.78 9.52 10.35 24.55 K intron_retention I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545615_17545850 chr2R_17545614_17545615;chr2R_17545850_17545851 chr2R_17545613_17545614;chr2R_17545851_17545985 0.00 0.00 0.00 4.17 0.00 0.00 2.63 0.00 2.17 NA 3.12 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA NA 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 NA NA NA NA NA NA NA 1.85 5.26 NA 0.00 NA NA NA 3.23 NA NA NA 0.00 NA 3.39 NA 0.00 0.00 K jcn_only_AD CG33558,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2816779_2817459;chr2R_2816779_2817327 chr2R_2816779_2817354 chr2R_2816679_2816778;chr2R_2817460_2817510 2.63 3.57 0.00 1.79 NA 0.00 2.04 14.89 3.57 1.82 0.00 3.92 7.41 5.88 3.39 6.98 0.00 0.00 2.33 2.20 2.63 1.28 0.00 3.12 0.00 4.00 9.76 NA 0.00 5.32 2.00 3.85 3.03 1.32 1.56 3.12 4.05 0.00 2.42 10.00 6.38 0.00 5.26 1.69 2.13 3.92 2.00 3.80 5.88 3.23 0.00 3.23 4.00 4.00 5.41 0.00 0.00 2.53 K intron_retention CG5594,CG2812 chr2R + chr2R_19795771_19795996 chr2R_19795770_19795771;chr2R_19795996_19795997 chr2R_19795677_19795770;chr2R_19795997_19796154 100.00 100.00 100.00 98.04 100.00 95.24 100.00 100.00 98.61 88.89 100.00 100.00 100.00 100.00 96.43 98.18 100.00 100.00 100.00 100.00 96.15 92.31 100.00 93.33 91.67 100.00 100.00 100.00 100.00 92.31 91.43 100.00 100.00 96.15 93.75 100.00 100.00 100.00 100.00 96.77 NA 98.00 100.00 100.00 100.00 94.44 100.00 100.00 98.04 100.00 96.43 100.00 100.00 90.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG17838,I_chr3R_16625404_16631668 chr3R + chr3R_16628274_16631671 chr3R_16628274_16631668 chr3R_16628255_16628273;chr3R_16631672_16631768 95.72 100.00 95.00 97.50 NA NA NA NA 97.06 95.45 NA 91.30 NA NA NA NA NA NA NA 93.33 NA NA 93.55 NA NA NA 86.96 NA 100.00 NA NA NA 94.44 84.62 NA 100.00 86.67 NA 100.00 100.00 NA 100.00 NA 85.71 NA NA NA 96.00 100.00 NA NA 86.36 NA NA NA NA NA 100.00 K intron_retention RpS9,E_chr3L_9503090_9504155,E_chr3L_9503259_9504163,I_chr3L_9504402_9504516 chr3L - chr3L_9503259_9503564 chr3L_9503258_9503259;chr3L_9503564_9503565 chr3L_9503159_9503258;chr3L_9503565_9503751 0.73 0.61 0.36 0.55 0.41 0.29 0.54 0.50 0.43 1.01 0.44 0.39 0.57 0.42 0.27 0.40 0.41 0.34 0.46 0.38 0.42 2.46 1.21 0.99 1.09 0.41 1.34 2.49 0.66 1.10 2.87 0.85 0.73 0.41 1.01 0.96 0.92 0.92 1.02 0.78 0.76 0.50 0.47 1.31 0.63 0.90 0.90 0.83 0.92 1.04 1.57 1.05 0.50 0.90 0.49 1.11 1.36 0.36 K alternative_acceptor CG6912 chr3R - chr3R_10962499_10962563 chr3R_10962502_10962563 chr3R_10962564_10962631;chr3R_10962433_10962498 87.21 87.76 83.82 88.14 89.66 83.10 84.75 88.31 84.51 83.33 92.00 85.19 87.37 88.33 84.42 94.23 87.50 88.73 81.54 84.15 90.38 76.47 87.18 79.63 94.44 91.67 87.23 84.38 89.47 85.37 90.91 87.76 84.31 90.70 97.06 90.00 88.64 90.32 87.80 88.41 84.62 84.17 82.93 85.42 75.00 89.09 86.67 77.27 90.07 NA 80.56 95.65 90.48 83.64 83.53 85.71 81.32 70.97 K alternative_donor CG32666 chrX + chrX_11387231_11387740 chrX_11387419_11387740 chrX_11387741_11388032;chrX_11387203_11387230 80.00 NA NA NA NA NA 80.00 NA 77.78 NA NA 75.00 NA NA NA 85.71 NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 77.78 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 88.89 NA NA NA NA NA NA NA NA NA K alternative_acceptor RI_chrX_8468338_8469380,I_chrX_8468338_8477573,CG12065,CE_chrX_8469528_8477573 chrX + chrX_8468441_8469386;chrX_8468441_8469383 chrX_8468441_8469380 chrX_8468351_8468440;chrX_8469387_8469480 40.85 41.46 37.21 43.64 31.58 39.47 40.54 36.49 42.98 42.42 50.00 43.06 28.21 38.10 46.34 38.64 48.84 48.39 40.43 40.00 43.24 36.45 42.86 39.06 37.93 47.50 38.71 42.31 48.57 35.19 42.37 40.74 34.21 40.85 39.02 33.33 38.89 40.48 34.15 42.31 50.00 39.53 43.90 48.33 42.31 39.58 39.68 47.50 45.83 40.82 41.94 41.51 44.44 45.83 40.00 46.81 42.19 39.13 K jcn_only_AA Cbp80,I_chrX_4545969_4549703,I_chrX_4551105_4551157 chrX + chrX_4551105_4551173 chrX_4551105_4551157 chrX_4551005_4551104;chrX_4551174_4551257 1.05 2.15 1.43 1.56 0.00 3.39 0.00 0.78 1.50 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 1.35 1.18 0.00 1.72 1.54 1.89 0.00 0.00 0.00 2.48 1.67 0.00 0.00 9.09 0.00 1.18 1.83 2.00 1.43 1.15 3.06 1.82 1.16 1.59 1.85 0.00 0.00 0.00 1.05 0.00 1.82 0.72 0.85 1.39 0.00 1.10 0.00 1.08 0.95 0.76 1.35 K alternative_acceptor Pld,I_chr2R_2130639_2136916,RI_chr2R_2138358_2141112 chr2R + chr2R_2129606_2130126 chr2R_2129606_2130035 chr2R_2129572_2129605;chr2R_2130127_2130224 100.00 NA 100.00 NA NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA 88.89 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA K alternative_acceptor mRpL20,RI_chr3L_13010445_13010503,RI_chr3L_13010729_13010775 chr3L - chr3L_13010445_13010503 chr3L_13010450_13010503 chr3L_13010504_13010570;chr3L_13010382_13010444 97.65 100.00 100.00 100.00 100.00 100.00 94.12 96.77 97.30 100.00 93.33 96.88 100.00 100.00 96.77 95.65 100.00 95.00 95.00 97.56 100.00 NA 91.30 100.00 100.00 95.45 93.75 100.00 93.33 92.86 100.00 100.00 95.45 96.43 100.00 94.74 93.75 94.12 95.24 95.65 96.97 97.73 100.00 100.00 100.00 92.16 95.45 100.00 100.00 100.00 100.00 93.75 100.00 100.00 95.83 100.00 93.94 98.25 K alternative_donor CG4119 chrX + chrX_5560355_5560409;chrX_5560347_5560409 chrX_5560351_5560409 chrX_5560410_5560501;chrX_5560114_5560346 20.75 13.73 30.43 31.82 22.22 26.09 34.78 28.00 12.28 18.52 17.39 20.37 34.78 20.83 36.84 36.00 19.05 16.67 29.17 20.93 19.05 19.23 25.33 18.87 21.95 33.33 18.75 23.40 16.67 18.52 17.39 21.62 20.75 29.73 3.12 29.27 22.33 21.13 18.75 18.18 24.14 27.12 26.32 10.87 20.51 21.88 19.44 10.42 27.50 21.74 18.84 12.90 15.15 21.88 15.15 14.29 17.65 11.54 K alternative_acceptor MESK2,I_chr2R_17401067_17401713 chr2R + chr2R_17389985_17394826 chr2R_17389985_17394799 chr2R_17389891_17389984;chr2R_17394827_17394906 55.56 50.00 NA 52.63 NA NA 55.56 52.38 57.14 NA NA 50.00 NA 46.67 60.00 60.00 NA NA 66.67 62.50 NA 50.00 53.85 58.33 NA NA 75.00 NA NA 75.00 50.00 NA 40.00 60.00 61.54 NA 60.00 NA NA 46.15 63.64 53.33 75.00 50.00 NA 58.33 54.55 55.56 55.00 54.55 58.82 NA NA NA 54.55 NA 58.33 55.56 K jcn_only_AD CG4877 chr3L + chr3L_16380053_16380120 chr3L_16380057_16380120 chr3L_16380121_16382448;chr3L_16379773_16380052 100.00 100.00 92.31 97.92 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 91.30 100.00 100.00 100.00 90.48 98.08 NA 96.67 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 96.15 90.00 100.00 100.00 100.00 100.00 100.00 91.67 97.14 100.00 95.83 100.00 90.91 100.00 100.00 NA NA 93.33 100.00 100.00 100.00 NA NA NA 100.00 NA NA 100.00 K intron_retention trbl,I_chr3L_20390576_20390678 chr3L - chr3L_20390576_20393525 chr3L_20390575_20390576;chr3L_20393525_20393526 chr3L_20390476_20390575;chr3L_20393526_20394677 10.47 0.00 10.00 14.81 12.50 NA 5.56 16.67 15.91 7.69 NA 5.71 25.00 21.43 8.33 11.11 NA 11.11 10.00 10.53 0.00 9.09 10.42 6.06 NA NA 13.33 27.78 37.50 7.14 4.35 10.00 12.50 8.57 12.50 17.24 7.69 6.90 8.11 7.27 11.76 12.50 10.53 7.50 12.50 9.52 16.67 3.85 10.81 9.52 14.29 19.05 10.53 0.00 10.53 6.67 22.22 5.56 K alternative_donor Nedd4,I_chr3L_17526753_17527450,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17526753_17527450;chr3L_17526950_17527450 chr3L_17526749_17527450 chr3L_17527451_17527550;chr3L_17526708_17526748 27.59 28.00 22.22 25.00 47.06 19.15 18.46 29.03 29.58 7.14 31.82 18.68 40.74 25.71 29.79 23.81 25.00 30.95 33.33 27.88 27.59 12.50 32.26 19.44 35.42 35.00 24.32 11.11 25.00 20.59 25.00 21.43 5.66 23.44 20.59 18.18 17.39 36.36 26.67 14.00 21.05 32.26 41.94 25.81 15.00 42.42 31.82 34.55 36.26 38.10 30.43 35.29 45.83 22.22 34.00 42.86 60.00 46.43 K alternative_acceptor CG31224,Cpsf73 chr3R - chr3R_14486963_14487033 chr3R_14486971_14487033 chr3R_14487034_14487476;chr3R_14486843_14486962 100.00 100.00 93.75 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 96.43 NA 100.00 100.00 97.62 90.91 94.74 100.00 100.00 100.00 92.86 100.00 95.00 96.67 100.00 95.24 100.00 95.83 100.00 95.83 95.65 100.00 100.00 96.97 100.00 96.67 100.00 100.00 94.44 100.00 100.00 96.15 100.00 100.00 97.30 96.88 92.31 100.00 100.00 100.00 100.00 97.30 100.00 K cassette Jupiter,I_chr3R_7418347_7445425,RE_chr3R_7419487_7429863,I_chr3R_7429934_7430307,I_chr3R_7429962_7445425,I_chr3R_7430006_7445425,RI_chr3R_7442793_7445425 chr3R - chr3R_7419489_7445425 chr3R_7419489_7429863;chr3R_7430006_7445425 chr3R_7429864_7430005 chr3R_7419355_7419488;chr3R_7445426_7445525 0.18 0.12 0.18 0.35 0.19 0.00 0.61 0.55 0.14 0.00 0.18 0.20 0.00 0.20 0.00 0.36 0.36 0.00 0.17 0.16 0.17 0.74 0.24 0.28 0.17 0.31 0.00 1.02 0.17 0.23 0.34 0.00 0.10 0.11 0.54 0.48 0.09 0.09 0.24 0.09 0.18 0.27 0.44 0.18 0.20 0.11 0.12 0.23 0.27 0.18 0.10 0.00 0.16 0.17 0.27 0.12 0.35 0.00 K alternative_acceptor pita,Rrp4 chr2R - chr2R_19437411_19437470 chr2R_19437415_19437470 chr2R_19437471_19438559;chr2R_19436488_19437410 100.00 100.00 100.00 97.87 100.00 100.00 96.67 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 96.43 100.00 100.00 100.00 100.00 97.37 100.00 97.30 97.30 96.77 100.00 100.00 100.00 100.00 100.00 97.87 96.67 100.00 100.00 95.65 97.92 98.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.70 98.00 98.39 94.87 96.43 100.00 100.00 100.00 95.24 95.65 98.39 K intron_retention RpL32,I_chr3R_25871509_25871807 chr3R - chr3R_25871509_25871708 chr3R_25871508_25871509;chr3R_25871708_25871709 chr3R_25871409_25871508;chr3R_25871709_25871727 85.11 NA 60.00 47.37 NA NA 92.86 83.33 76.92 83.33 NA 81.25 NA NA 100.00 82.35 NA NA 87.50 66.67 NA 97.14 81.82 83.33 78.57 72.73 82.76 100.00 85.11 76.47 95.00 72.00 91.30 NA 93.75 95.24 93.75 91.67 88.00 78.79 87.10 72.22 NA 90.00 96.00 85.71 94.44 76.67 94.12 94.44 91.30 NA 84.62 83.33 88.89 94.12 80.00 80.95 K intron_retention alph,I_chr3R_25417890_25422962 chr3R + chr3R_25417890_25422962 chr3R_25417889_25417890;chr3R_25422962_25422963 chr3R_25417790_25417889;chr3R_25422963_25423062 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG17019,I_chr2R_8821104_8821171 chr2R - chr2R_8819247_8819306 chr2R_8819246_8819247;chr2R_8819306_8819307 chr2R_8819107_8819246;chr2R_8819307_8820867 0.00 0.00 0.00 0.00 NA 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 K intron_retention CG33936,snoRNA:Me18S-G1358b,CG33937,RI_chr3R_5183458_5183705 chr3R + chr3R_5180806_5183705 chr3R_5180805_5180806;chr3R_5183705_5183706 chr3R_5180647_5180805;chr3R_5183706_5183805 0.00 0.00 0.00 0.00 0.00 0.00 0.91 1.01 0.51 0.00 0.00 0.50 0.00 0.00 0.74 1.32 0.56 1.06 0.50 0.50 0.00 0.00 0.00 0.35 0.00 0.00 0.80 0.84 0.35 0.25 0.00 0.00 0.18 0.55 0.45 0.00 0.00 0.81 0.65 0.14 0.00 0.40 0.53 0.23 0.00 0.00 0.70 0.44 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Dsp1,I_chrX_16228447_16229355,I_chrX_16231287_16231413 chrX + chrX_16228447_16230320;chrX_16228447_16230323 chrX_16228447_16230299 chrX_16228347_16228446;chrX_16230324_16230776 14.75 17.65 12.87 11.45 23.08 20.00 14.75 14.56 19.91 25.81 10.14 19.07 13.33 15.24 18.48 19.77 19.48 24.75 8.85 14.11 11.25 38.20 23.58 16.30 14.71 17.57 27.37 28.26 12.50 15.28 12.77 11.63 11.11 16.23 12.70 9.41 8.70 6.90 17.53 12.30 9.38 14.29 12.26 14.29 18.75 17.81 11.76 14.49 15.87 14.12 10.69 17.07 3.92 10.00 17.20 17.14 19.72 14.89 K intron_retention Scamp,I_chrX_15342614_15342891,I_chrX_15343542_15343655 chrX - chrX_15340868_15340936 chrX_15340867_15340868;chrX_15340936_15340937 chrX_15340237_15340867;chrX_15340937_15341863 100.00 100.00 99.32 100.00 100.00 99.07 99.55 100.00 100.00 100.00 98.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.02 100.00 100.00 100.00 98.92 100.00 100.00 100.00 100.00 100.00 99.50 100.00 99.38 99.63 99.09 100.00 100.00 98.94 100.00 99.61 100.00 100.00 100.00 100.00 100.00 99.59 100.00 100.00 100.00 99.29 100.00 100.00 100.00 100.00 100.00 99.30 100.00 100.00 N jcn_only_AD mei-9 chrX - chrX_4208761_4208856 chrX_4208761_4208849 chrX_4208622_4208760;chrX_4208857_4209826 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.00 42.86 NA NA NA NA NA NA NA NA 43.48 NA NA 27.27 28.57 NA 42.86 NA 56.52 NA NA NA NA NA NA 52.38 51.85 K jcn_only_AA Psi,RI_chr2R_12752536_12752596,I_chr2R_12753387_12753659 chr2R - chr2R_12752536_12752596;chr2R_12752542_12752596 chr2R_12752539_12752596 chr2R_12752597_12752696;chr2R_12752436_12752535 64.71 54.29 51.28 57.38 45.16 74.29 73.53 57.14 70.77 60.00 53.85 65.33 81.82 65.38 73.81 57.58 58.97 58.33 66.67 68.42 58.33 53.70 55.00 56.67 NA 68.29 60.00 65.00 74.42 71.43 58.33 59.26 69.57 59.32 NA 66.67 63.93 69.23 54.29 65.93 64.71 60.92 68.97 66.67 73.91 61.70 64.71 61.96 60.61 62.50 67.74 NA 70.45 66.67 67.31 68.75 73.33 63.64 K cassette yrt chr3R - chr3R_9257076_9257390 chr3R_9257076_9257136;chr3R_9257257_9257390 chr3R_9257137_9257256 chr3R_9256921_9257075;chr3R_9257391_9257525 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 K intron_retention Tak1,I_chrX_20388150_20389255 chrX - chrX_20388150_20388725 chrX_20388149_20388150;chrX_20388725_20388726 chrX_20388050_20388149;chrX_20388726_20388923 2.13 6.82 5.56 0.00 2.94 11.11 1.82 8.82 2.68 0.00 7.89 3.57 7.41 0.00 5.56 4.88 0.00 0.00 0.00 2.47 9.09 1.37 2.13 2.70 5.71 0.00 2.44 9.80 0.00 0.00 5.00 0.00 2.13 4.26 0.00 0.00 1.69 0.00 0.00 4.17 0.00 2.78 0.00 4.44 4.00 0.00 1.61 0.00 7.14 5.77 4.35 0.00 0.00 3.85 2.13 0.00 1.18 0.00 K intron_retention Cyp28a5 chr2L + chr2L_13977939_13978002 chr2L_13977938_13977939;chr2L_13978002_13978003 chr2L_13977696_13977938;chr2L_13978003_13978107 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.76 0.00 0.00 0.00 0.00 K alternative_acceptor Glycogenin,noncoding_8326 chr2R + chr2R_17096177_17097687 chr2R_17096177_17097476 chr2R_17095975_17096176;chr2R_17097688_17098249 83.33 NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA 83.33 NA 60.00 NA NA NA 83.33 80.00 NA NA NA NA NA NA NA K intron_retention ALiX,I_chr3R_23531574_23532266 chr3R - chr3R_23525090_23525156 chr3R_23525089_23525090;chr3R_23525156_23525157 chr3R_23524808_23525089;chr3R_23525157_23525275 0.00 1.27 0.00 1.19 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.65 0.00 0.84 1.39 0.00 1.68 1.01 5.11 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.87 1.31 0.00 0.00 0.00 0.87 0.00 0.00 0.00 2.56 1.28 0.00 0.71 0.72 0.00 0.00 0.00 0.00 0.00 0.74 K intron_retention Acox57D-p,Acox57D-d chr2R + chr2R_17274329_17274419 chr2R_17274328_17274329;chr2R_17274419_17274420 chr2R_17274238_17274328;chr2R_17274420_17274582 0.00 0.00 0.00 2.27 0.00 0.00 0.00 4.35 0.00 NA 0.00 0.00 0.00 0.00 3.03 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 9.09 2.44 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG15221 chrX + chrX_11629474_11629534 chrX_11629473_11629474;chrX_11629534_11629535 chrX_11628817_11629473;chrX_11629535_11630650 0.00 1.37 0.00 1.55 0.00 3.45 0.00 1.83 0.56 0.00 0.00 0.88 0.00 0.00 0.00 0.00 1.67 0.00 0.00 1.26 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 2.56 3.70 0.00 0.00 0.00 0.91 0.00 1.54 0.00 2.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 1.37 0.00 1.08 0.00 K intron_retention l(2)s5379,I_chr2L_2227282_2227349,RI_chr2L_2228057_2229265,I_chr2L_2229012_2229265,I_chr2L_2229179_2229265 chr2L + chr2L_2227282_2229265 chr2L_2227281_2227282;chr2L_2229265_2229266 chr2L_2227182_2227281;chr2L_2229266_2229365 0.64 0.00 0.00 1.74 3.51 0.00 1.90 0.68 1.75 0.00 1.83 0.00 1.71 2.86 1.60 2.05 0.86 0.00 1.72 1.26 0.00 0.73 0.00 0.99 0.00 0.00 0.00 3.03 1.64 1.32 0.00 0.53 0.78 0.73 0.00 0.00 0.00 1.23 0.00 0.63 0.00 0.76 0.00 0.74 0.00 0.64 0.00 0.00 1.37 1.12 4.24 3.85 0.00 0.00 1.10 0.00 0.00 0.00 K jcn_only_AA woc,I_chr3R_23089174_23089695,I_chr3R_23096096_23096561 chr3R - chr3R_23087663_23087837 chr3R_23087666_23087837 chr3R_23087838_23087882;chr3R_23086219_23087662 60.00 58.33 58.33 75.00 NA 71.43 NA 65.00 63.64 NA NA 53.33 NA NA NA NA NA NA NA 63.89 NA 55.00 70.00 68.42 NA NA 58.33 NA NA 60.71 NA 43.48 67.19 48.15 64.00 NA 56.52 46.67 60.94 55.56 NA 58.82 NA 60.00 NA 60.00 53.57 66.67 75.00 63.64 51.22 NA NA 52.38 60.00 53.85 NA 46.15 K intron_retention CG17454 chr3L + chr3L_23709421_23709472 chr3L_23709420_23709421;chr3L_23709472_23709473 chr3L_23709002_23709420;chr3L_23709473_23710467 0.00 0.00 7.69 7.69 0.00 0.00 3.03 2.70 7.58 0.00 0.00 6.82 6.25 8.82 2.63 5.66 0.00 0.00 0.00 4.55 0.00 0.00 7.27 0.00 0.00 6.25 5.56 6.90 0.00 0.00 0.00 4.44 8.89 3.12 0.00 26.09 0.00 0.00 0.00 1.82 4.65 0.00 5.26 9.09 0.00 0.00 2.38 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 2.56 K alternative_last_exon CG17343 chr2L + chr2L_19065270_19070982 chr2L_19065270_19069443 chr2L_19070983_19071033 chr2L_19069444_19069681 chr2L_19065183_19065269 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 88.89 100.00 88.89 100.00 100.00 100.00 NA 85.71 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 95.65 100.00 NA 100.00 100.00 87.50 100.00 100.00 92.86 100.00 NA 100.00 100.00 100.00 100.00 92.86 100.00 K intron_retention mRpS25 chrX - chrX_14476727_14476789 chrX_14476726_14476727;chrX_14476789_14476790 chrX_14476532_14476726;chrX_14476790_14477016 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 1.54 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD RpL28,RI_chr3L_3221710_3221877,I_chr3L_3221982_3222744,snoRNA:Or-CD11c,snoRNA:Or-CD11b,snoRNA:Or-CD11a,I_chr3L_3222575_3222787 chr3L - chr3L_3221982_3222152;chr3L_3221982_3222574;chr3L_3221982_3222926;chr3L_3221982_3222365;chr3L_3221982_3222847 chr3L_3221982_3222787 chr3L_3221882_3221981;chr3L_3222927_3222958 8.98 10.53 2.92 1.24 1.26 1.46 4.73 0.88 3.23 12.03 1.49 6.30 2.42 6.53 1.45 4.72 1.94 3.65 2.41 3.89 3.78 4.84 32.64 32.52 27.50 1.49 19.83 8.56 16.76 19.32 11.15 9.15 8.42 0.89 21.92 26.37 23.39 28.71 42.86 17.66 9.38 2.46 1.95 19.74 8.56 20.58 29.75 17.91 2.79 28.91 41.46 19.64 10.07 47.71 2.30 29.89 13.04 8.98 K intron_retention CG9646 chr2R + chr2R_12940650_12940773 chr2R_12940649_12940650;chr2R_12940773_12940774 chr2R_12939327_12940649;chr2R_12940774_12940923 0.00 7.41 0.00 0.00 0.00 0.00 3.28 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 6.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 7.69 0.00 0.00 0.00 0.00 K intron_retention CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_245066_246387 chr4_245065_245066;chr4_246387_246388 chr4_244571_245065;chr4_246388_246398 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.64 0.00 NA NA 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.12 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA K intron_retention CG6490,F_chr3R_22303527_22303741 chr3R - chr3R_22303527_22357834 chr3R_22303526_22303527;chr3R_22357834_22357835 chr3R_22303427_22303526;chr3R_22357835_22358144 1.17 0.00 0.00 4.29 0.00 0.00 1.43 5.19 2.33 0.00 0.00 6.67 4.76 10.00 6.12 8.51 7.69 11.54 5.88 5.31 9.52 2.70 3.12 0.00 0.00 4.17 3.64 11.76 0.00 0.00 0.00 0.00 0.83 4.48 5.00 0.00 0.00 0.00 1.64 0.91 0.00 2.06 0.00 0.00 0.00 7.69 0.00 0.72 2.60 NA 0.00 0.00 4.17 NA 3.92 0.00 NA 0.00 K jcn_only_AA Sap-r,E_chr3R_26711286_26714646,I_chr3R_26712266_26712343,I_chr3R_26712627_26714606,RI_chr3R_26713323_26714382 chr3R - chr3R_26712266_26712343 chr3R_26712270_26712343 chr3R_26712344_26712443;chr3R_26712166_26712265 99.89 99.72 99.87 99.92 99.95 99.80 99.76 99.95 99.96 99.91 99.95 99.95 99.95 99.88 99.96 99.82 99.83 99.95 99.95 99.87 99.90 99.86 99.92 99.91 99.93 99.75 99.84 99.83 99.95 99.89 98.96 99.89 99.87 99.94 99.75 99.82 99.87 99.74 100.00 99.77 100.00 99.86 99.93 99.73 99.80 100.00 99.92 99.76 99.86 99.92 99.70 100.00 100.00 100.00 100.00 99.21 100.00 99.86 K jcn_only_AD CG9705,I_chr3L_16774043_16774562 chr3L + chr3L_16773891_16774562 chr3L_16774043_16774562 chr3L_16774563_16774662;chr3L_16773605_16773890 3.68 4.11 3.68 5.56 1.72 4.62 5.63 7.19 5.71 2.21 10.20 28.18 6.54 4.39 3.47 5.30 7.38 2.46 5.31 3.51 5.49 2.26 3.26 2.13 1.66 4.80 5.05 9.38 7.20 3.41 10.00 3.93 4.10 1.90 1.15 2.15 3.27 2.15 1.47 1.57 2.22 3.70 2.52 6.12 2.79 3.17 2.07 1.85 3.96 3.69 1.91 1.34 3.72 0.67 7.01 2.71 4.12 3.25 K alternative_donor eIF-2beta,RI_chr3L_12519486_12519541 chr3L - chr3L_12519486_12519596;chr3L_12519486_12519541;chr3L_12519486_12519590 chr3L_12519486_12519688 chr3L_12519386_12519485;chr3L_12519689_12519829 99.30 99.55 100.00 98.95 100.00 98.76 98.88 100.00 98.86 98.67 100.00 98.57 100.00 99.24 99.51 99.05 99.24 98.49 100.00 99.02 99.48 99.52 98.77 100.00 97.96 99.49 98.58 98.12 97.40 99.52 98.08 100.00 99.25 99.62 99.43 100.00 99.30 100.00 97.67 99.09 98.32 99.03 99.33 99.68 100.00 98.90 99.61 99.36 99.01 98.60 98.88 100.00 99.23 99.60 99.06 100.00 100.00 99.52 K jcn_only_AD I_chr2R_13460029_13460240,Dcr-2,I_chr2R_13466001_13466061,I_chr2R_13466001_13466072 chr2R - chr2R_13466001_13466058;chr2R_13466001_13466061 chr2R_13466001_13466072 chr2R_13465901_13466000;chr2R_13466073_13466161 2.57 0.00 2.82 8.06 0.00 3.77 6.60 1.69 1.26 2.70 1.96 1.48 1.45 1.89 0.00 6.74 3.75 4.35 3.70 3.64 0.00 4.35 0.00 6.15 2.33 5.88 5.26 5.26 2.13 5.36 8.14 4.76 3.57 0.00 2.38 0.00 0.00 1.96 1.85 4.17 NA 5.19 5.00 1.43 0.00 9.09 4.76 2.17 1.60 4.00 0.00 1.61 0.00 4.00 4.82 3.85 0.00 2.44 K intron_retention unk,I_chr3R_18980963_18981530 chr3R - chr3R_18980690_18981530 chr3R_18980689_18980690;chr3R_18981530_18981531 chr3R_18980567_18980689;chr3R_18981531_18981630 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 2.50 0.00 8.33 0.00 0.00 0.00 4.00 0.00 5.26 0.00 0.00 15.38 0.00 4.17 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.52 0.00 3.45 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA K jcn_only_AA CG11148,I_chr4_886499_886547,RI_chr4_886921_887162 chr4 - chr4_886478_886556 chr4_886499_886556 chr4_886557_886647;chr4_886399_886477 87.30 85.96 95.45 99.13 76.47 81.33 95.10 91.35 85.21 80.56 85.48 87.42 90.00 90.91 83.50 84.17 96.83 85.11 87.10 90.72 87.93 85.29 81.25 83.61 92.54 93.10 87.50 84.51 87.50 78.72 86.42 NA 83.33 89.78 88.73 97.47 86.99 82.89 90.22 87.18 100.00 88.65 85.94 81.05 87.10 90.62 81.08 83.33 82.42 84.31 93.33 91.53 94.12 94.12 88.89 82.05 88.24 100.00 K jcn_only_AD nonA,I_chrX_16265109_16265346 chrX + chrX_16259676_16265346 chrX_16265109_16265346 chrX_16265347_16265446;chrX_16259620_16259675 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 9.52 NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 K alternative_acceptor CG1815,I_chr3R_27501104_27501167,I_chr3R_27501104_27501176 chr3R + chr3R_27501104_27501176;chr3R_27501104_27501167 chr3R_27501104_27501179 chr3R_27501004_27501103;chr3R_27501180_27501267 5.41 10.00 5.41 1.69 3.57 3.33 10.00 5.17 2.94 7.32 6.06 6.25 10.00 3.23 2.33 2.13 15.15 7.14 2.86 5.41 5.26 7.41 6.25 12.24 3.12 3.03 6.25 6.67 3.77 5.77 8.00 2.38 9.78 10.14 9.09 2.63 1.69 9.38 4.26 3.61 2.27 3.80 3.33 0.00 10.34 8.70 5.26 4.42 10.29 6.82 8.70 11.76 4.35 5.56 5.88 3.70 12.50 4.17 K alternative_donor Mms19,I_chr3R_1059416_1059514 chr3R + chr3R_1059416_1059514 chr3R_1059457_1059514 chr3R_1059515_1059614;chr3R_1059316_1059415 100.00 100.00 100.00 100.00 93.75 94.44 100.00 100.00 97.73 88.89 100.00 100.00 94.44 100.00 96.30 96.77 100.00 100.00 100.00 97.92 100.00 100.00 100.00 97.22 94.74 100.00 95.24 93.75 95.24 100.00 91.30 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 97.50 93.75 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 K jcn_only_AA CG14446 chrX + chrX_6123824_6123881 chrX_6123824_6123878 chrX_6123404_6123823;chrX_6123882_6124017 9.38 6.90 7.50 14.29 3.85 6.25 6.67 1.67 13.89 14.58 4.55 10.91 9.76 9.38 6.67 7.41 18.18 8.57 11.54 6.10 9.09 4.69 16.07 8.93 9.38 6.06 8.11 12.00 10.53 10.42 6.45 17.39 9.09 13.33 5.13 13.16 9.09 12.20 9.68 12.05 0.00 10.00 2.78 10.00 0.00 4.17 8.70 8.70 10.47 19.05 13.64 22.22 18.18 NA 12.24 NA NA 13.79 K intron_retention Med,CG1792 chr3R + chr3R_27439940_27440000 chr3R_27439939_27439940;chr3R_27440000_27440001 chr3R_27439657_27439939;chr3R_27440001_27440169 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 K cassette Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8445229_8456103 chr3L_8445229_8455071;chr3L_8455189_8456103 chr3L_8455072_8455188 chr3L_8445200_8445228;chr3L_8456104_8456203 100.00 100.00 100.00 95.00 NA 100.00 87.50 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 88.89 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA K intron_retention LanA,I_chr3L_6208090_6208194 chr3L - chr3L_6202269_6202335 chr3L_6202268_6202269;chr3L_6202335_6202336 chr3L_6199077_6202268;chr3L_6202336_6204236 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.31 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor E(Pc) chr2R + chr2R_7339818_7340897;chr2R_7339807_7340897 chr2R_7339889_7340897 chr2R_7340898_7340908;chr2R_7339722_7339806 25.00 NA NA 33.33 NA NA 22.22 22.22 28.57 44.44 NA 28.57 NA NA NA 12.50 NA NA NA 25.00 NA 25.00 25.00 50.00 NA NA NA 11.11 38.46 28.57 NA NA 25.00 NA 42.86 27.27 14.29 NA NA 22.73 NA 42.86 NA 16.67 NA 33.33 NA 32.00 14.29 NA 14.29 NA 14.29 NA NA NA NA 33.33 K alternative_donor gish chr3R + chr3R_12098804_12100306 chr3R_12098835_12100306 chr3R_12100307_12100597;chr3R_12098798_12098803 100.00 100.00 100.00 97.37 94.74 100.00 100.00 98.04 95.24 100.00 100.00 97.50 100.00 96.77 100.00 98.04 100.00 95.24 100.00 97.37 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 88.89 100.00 97.67 100.00 100.00 95.45 100.00 92.31 100.00 95.83 97.87 96.43 100.00 100.00 100.00 90.00 97.22 98.04 100.00 100.00 100.00 NA NA 97.56 100.00 90.91 95.00 K intron_retention CG34234,RI_chr2R_8394261_8394315 chr2R - chr2R_8374771_8374827 chr2R_8374770_8374771;chr2R_8374827_8374828 chr2R_8374320_8374770;chr2R_8374828_8374896 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_donor myoglianin,RI_chr4_712986_714006,RI_chr4_716066_716482,RI_chr4_716153_716613 chr4 - chr4_715043_716322;chr4_715043_716708;chr4_715043_716482;chr4_715043_716613 chr4_715043_715839 chr4_714007_715042;chr4_716709_716712 80.00 77.78 100.00 72.00 75.00 87.50 73.08 55.17 70.73 100.00 100.00 58.33 35.00 66.67 87.50 60.53 75.00 77.78 78.57 63.64 100.00 100.00 60.00 100.00 80.00 100.00 83.33 100.00 100.00 60.00 63.64 NA 100.00 65.52 83.33 100.00 80.00 100.00 100.00 88.89 50.00 76.19 66.67 77.78 NA 100.00 100.00 100.00 70.37 66.67 81.82 66.67 75.00 100.00 80.00 66.67 100.00 100.00 K cassette CG42388,F_chrX_8932173_8934103 chrX + chrX_8924930_8945069 chrX_8924930_8934070;chrX_8934350_8945069 chrX_8934071_8934349 chrX_8924896_8924929;chrX_8945070_8945118 100.00 NA NA 80.00 NA NA 100.00 100.00 88.89 100.00 NA 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 NA 87.50 85.71 100.00 NA NA 100.00 100.00 80.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 85.71 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA NA K intron_retention Hrb98DE,I_chr3R_24425722_24426084,I_chr3R_24425722_24428493,I_chr3R_24426291_24426781,I_chr3R_24426737_24426805,snoRNA:Psi28S-3405a,snoRNA:Psi28S-3305a,snoRNA:Psi28S-3405b,snoRNA:Psi28S-3405c,snoRNA:Psi28S-3305b,snoRNA:Psi28S-3405d,RI_chr3R_24429041_24431183 chr3R + chr3R_24425722_24426439 chr3R_24425721_24425722;chr3R_24426439_24426440 chr3R_24425622_24425721;chr3R_24426440_24426915 8.89 8.45 5.48 9.09 6.25 8.89 8.45 12.50 10.64 29.17 NA 10.34 5.00 8.20 6.06 6.57 2.50 3.92 6.90 5.74 NA 9.09 18.42 14.04 25.49 9.52 12.73 8.82 11.86 10.87 6.38 6.06 8.11 8.33 18.87 17.74 9.76 7.50 7.89 7.76 11.63 9.47 7.32 13.33 8.77 11.63 12.28 5.61 8.18 10.53 15.66 12.12 9.52 23.73 8.00 7.81 12.73 3.45 K jcn_only_AA CG7843,I_chr2R_1972736_1972822 chr2R - chr2R_1971896_1972012;chr2R_1971883_1972012 chr2R_1971513_1972012 chr2R_1972013_1972292 90.78 90.91 93.94 85.15 90.00 93.44 92.73 90.78 93.29 72.97 87.04 95.80 93.42 92.06 91.46 91.59 93.33 93.33 88.37 91.87 94.55 92.94 91.67 84.52 86.96 91.74 83.12 88.00 90.91 91.49 55.64 90.62 86.30 90.98 89.86 80.85 90.32 96.55 93.75 85.05 90.70 89.87 81.36 92.73 88.24 90.77 89.29 91.14 90.77 90.54 87.95 83.67 93.75 97.44 91.21 85.25 97.67 86.30 K intron_retention CG10737 chr2R + chr2R_15062754_15063770 chr2R_15062753_15062754;chr2R_15063770_15063771 chr2R_15062592_15062753;chr2R_15063771_15063852 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Rab1,I_chr3R_17094214_17094492,I_chr3R_17099005_17099062 chr3R - chr3R_17093176_17093231 chr3R_17093175_17093176;chr3R_17093231_17093232 chr3R_17092948_17093175;chr3R_17093232_17093279 0.00 0.00 0.52 0.32 0.00 0.00 0.33 0.33 0.40 0.00 0.56 0.00 0.00 0.00 0.47 0.44 0.00 0.00 0.24 0.14 0.00 0.32 0.00 0.00 0.87 0.47 0.78 1.30 0.91 0.00 0.48 0.00 0.00 0.34 0.00 0.00 0.56 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.19 0.54 0.27 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention cnn,I_chr2R_9333096_9336723,I_chr2R_9333096_9336812,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9334834_9336723 chr2R_9334833_9334834;chr2R_9336723_9336724 chr2R_9334744_9334833;chr2R_9336724_9336792 90.91 92.31 90.91 94.12 NA NA 82.61 81.82 100.00 100.00 NA 89.47 87.50 NA 77.78 94.74 87.50 NA 91.67 84.62 77.78 92.31 90.91 91.67 100.00 100.00 95.45 95.24 100.00 86.36 81.82 NA 94.74 100.00 NA 84.62 88.24 NA 90.91 86.36 NA 85.71 70.00 93.33 NA 90.00 NA 93.33 81.82 88.89 93.33 NA NA NA 90.00 NA NA NA K intron_retention Unc-76,RI_chrX_1983640_1985001,I_chrX_2002576_2003165 chrX + chrX_1985484_1985550 chrX_1985483_1985484;chrX_1985550_1985551 chrX_1985002_1985483;chrX_1985551_1985766 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21124522_21125346 chr2L_21124615_21125346 chr2L_21125347_21125439;chr2L_21124443_21124521 1.64 0.00 3.33 14.04 5.56 2.04 3.03 5.06 1.23 5.56 0.00 0.00 0.00 2.56 0.00 4.88 0.00 0.00 4.35 0.00 5.08 5.00 0.00 0.00 2.86 0.00 6.06 3.12 0.00 2.94 3.92 NA 0.00 3.70 0.00 0.00 0.00 4.88 0.00 0.00 NA 3.70 2.56 4.26 0.00 0.00 0.00 0.00 2.48 3.23 3.51 2.94 0.00 NA 0.00 0.00 0.00 3.12 K cassette HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13162296_13163860 chrX_13162296_13162726;chrX_13162874_13163860 chrX_13162727_13162873 chrX_13161355_13162295;chrX_13163861_13163991 99.06 96.10 99.33 93.12 100.00 100.00 98.55 99.07 100.00 97.06 100.00 99.18 33.09 99.06 99.38 99.29 100.00 99.13 99.14 98.54 99.06 91.21 97.87 98.51 99.31 96.21 97.91 99.15 96.55 97.27 98.50 97.94 98.23 99.52 98.73 99.39 98.53 99.44 98.41 99.13 99.13 99.28 100.00 99.44 98.41 99.29 99.02 97.97 98.81 100.00 98.20 97.46 98.94 100.00 99.36 99.08 98.02 99.11 K jcn_only_AD CG18317,RI_chr2L_1718492_1723881 chr2L - chr2L_1718492_1718739;chr2L_1718492_1718695 chr2L_1718492_1718674 chr2L_1718421_1718491;chr2L_1718740_1718903 62.20 51.85 57.38 59.02 70.45 69.57 69.51 59.34 62.20 73.87 69.70 65.89 68.00 83.78 62.26 60.00 71.79 88.64 68.97 52.38 56.82 45.74 60.78 60.00 69.77 68.29 64.52 55.56 56.15 54.29 64.62 48.81 53.33 62.89 49.37 50.70 69.70 65.00 67.20 15.32 60.24 63.25 71.43 56.07 63.37 62.14 62.79 61.03 57.80 47.95 57.14 60.61 65.75 63.49 65.67 54.17 63.93 60.81 K jcn_only_AA E_chr2L_20647810_20648188,CG2614 chr2L + chr2L_20658156_20658223 chr2L_20658156_20658211 chr2L_20657537_20658155;chr2L_20658224_20658404 96.67 97.73 95.12 100.00 100.00 100.00 95.83 100.00 95.24 NA 96.67 96.23 96.67 100.00 100.00 97.06 95.24 96.00 100.00 98.78 90.91 97.83 100.00 97.78 92.59 95.24 96.23 96.67 96.15 100.00 87.76 90.48 96.15 94.87 94.12 100.00 94.23 100.00 93.02 97.56 93.10 96.77 100.00 96.43 100.00 95.35 100.00 96.88 94.74 95.00 91.38 95.65 100.00 97.56 97.87 96.97 96.43 96.88 K intron_retention CG2691,noncoding_23539 chrX - chrX_13514306_13514376 chrX_13514305_13514306;chrX_13514376_13514377 chrX_13513771_13514305;chrX_13514377_13514567 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.82 K intron_retention RpS11,I_chr2R_8087545_8087625,I_chr2R_8087545_8087698,I_chr2R_8087747_8088193 chr2R - chr2R_8087545_8087620 chr2R_8087544_8087545;chr2R_8087620_8087621 chr2R_8087476_8087544;chr2R_8087621_8087689 0.07 0.08 0.09 0.07 0.15 0.05 0.08 0.08 0.10 0.12 0.07 0.05 0.06 0.09 0.07 0.08 0.05 0.07 0.07 0.06 0.04 0.13 0.10 0.06 0.04 0.10 0.13 0.45 0.10 0.15 0.07 0.07 0.10 0.07 0.09 0.00 0.07 0.09 0.07 0.10 0.10 0.08 0.04 0.06 0.06 0.07 0.05 0.15 0.15 0.09 0.09 0.00 0.06 0.02 0.06 0.04 0.05 0.10 K intron_retention MB8.chr3R.pasa.66,CG1091,I_chr3R_2909743_2909904,I_chr3R_2910029_2910096,RI_chr3R_2910490_2910686,RI_chr3R_2911041_2911135,RI_chr3R_2946518_2946663 chr3R - chr3R_2909614_2909669 chr3R_2909613_2909614;chr3R_2909669_2909670 chr3R_2909597_2909613;chr3R_2909670_2909714 23.81 14.89 16.13 34.21 20.83 24.14 34.78 28.00 21.74 31.82 27.27 21.62 21.88 27.27 20.00 24.32 21.21 24.44 23.33 28.77 24.14 56.25 32.05 16.25 45.83 38.10 31.82 48.15 29.03 27.59 19.74 31.25 32.00 26.32 23.08 48.48 26.42 18.64 17.91 23.21 47.62 16.95 24.14 21.88 22.58 19.57 15.66 16.67 24.14 17.19 20.59 23.81 15.00 21.54 15.56 25.00 16.90 20.69 K jcn_only_AA Sin3A,RI_chr2R_8468118_8468706,I_chr2R_8473578_8480185,RI_chr2R_8479951_8480233 chr2R - chr2R_8468118_8468706 chr2R_8468136_8468706 chr2R_8468707_8468806;chr2R_8468018_8468117 87.18 88.78 92.65 87.16 83.82 93.24 56.63 91.87 91.88 90.28 80.65 88.00 91.67 82.81 88.51 81.19 88.52 93.06 87.06 82.61 80.28 92.21 81.19 88.03 93.40 82.28 91.03 89.11 65.33 75.28 86.49 90.57 80.26 90.91 86.67 94.51 90.07 78.35 94.97 90.67 84.21 87.18 87.88 83.90 68.18 81.08 84.38 72.48 90.73 90.85 90.61 78.79 88.64 80.56 83.87 89.05 86.59 75.71 K intron_retention CG4210 chr3R + chr3R_11039830_11039891 chr3R_11039829_11039830;chr3R_11039891_11039892 chr3R_11039694_11039829;chr3R_11039892_11039943 0.00 0.00 0.00 0.00 NA 4.35 2.70 5.00 6.82 NA NA 0.00 NA 0.00 8.70 5.66 0.00 0.00 6.67 1.79 0.00 0.00 2.70 0.00 0.00 8.70 0.00 10.53 3.23 0.00 0.00 0.00 0.00 8.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.52 5.26 2.38 3.12 3.57 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 2.60 0.00 K intron_retention cher,I_chr3R_12927155_12927241,I_chr3R_12927155_12927867,I_chr3R_12927155_12927890,I_chr3R_12927279_12927890,I_chr3R_12943024_12948119 chr3R - chr3R_12926801_12927073 chr3R_12926800_12926801;chr3R_12927073_12927074 chr3R_12926714_12926800;chr3R_12927074_12927117 0.00 0.00 0.14 0.17 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.13 0.52 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.42 0.00 0.00 0.39 0.00 0.00 0.21 0.00 0.00 0.12 0.09 0.00 0.48 0.37 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.13 0.00 0.00 0.00 K multi_cassette DCAP,I_chr2R_6178643_6181126,RI_chr2R_6183553_6192101,I_chr2R_6188094_6192101 chr2R + chr2R_6180945_6182116 chr2R_6180945_6181126;chr2R_6181267_6181365;chr2R_6181439_6182116 chr2R_6181127_6181266;chr2R_6181366_6181438 chr2R_6180937_6180944;chr2R_6182117_6182270 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Spase25,I_chrX_11379530_11379593 chrX + chrX_11380199_11380268 chrX_11380198_11380199;chrX_11380268_11380269 chrX_11379594_11380198;chrX_11380269_11380509 70.09 70.83 69.70 71.74 55.00 68.00 54.17 70.18 69.74 NA 59.09 49.21 38.30 75.00 69.23 71.67 77.42 21.88 66.67 52.63 67.86 90.00 81.82 73.08 92.31 87.88 73.91 81.25 80.00 NA 79.41 78.57 70.00 70.37 55.56 NA 61.11 69.23 78.95 78.95 55.00 63.08 66.67 93.33 50.00 42.86 61.11 72.22 60.78 79.41 66.67 85.71 75.00 73.33 73.33 77.27 62.16 58.82 K intron_retention CG10904 chr2R - chr2R_19857056_19857118 chr2R_19857055_19857056;chr2R_19857118_19857119 chr2R_19856455_19857055;chr2R_19857119_19857763 8.22 8.33 0.00 47.06 NA 14.29 3.45 8.70 9.76 NA NA 6.25 0.00 0.00 15.00 7.14 NA 9.09 0.00 6.56 0.00 NA 7.14 11.11 NA 0.00 12.50 NA 20.00 17.65 17.78 0.00 11.11 3.33 NA 0.00 14.29 NA 0.00 8.82 16.67 7.89 15.79 10.53 3.45 2.27 12.50 0.00 10.00 9.09 0.00 NA 0.00 10.53 12.90 NA 8.11 1.47 K intron_retention smo chr2L + chr2L_278324_278642 chr2L_278323_278324;chr2L_278642_278643 chr2L_277930_278323;chr2L_278643_279124 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.23 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 3.85 NA NA NA 0.00 NA NA 3.12 NA NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K cassette RhoGAP19D,EI_chrX_20347839_20348139,DMG4-MB6.chrX.37.001,RI_chrX_20380495_20381649 chrX - chrX_20358550_20361573 chrX_20358550_20359356;chrX_20359675_20361573 chrX_20359357_20359674 chrX_20358035_20358549;chrX_20361574_20362133 98.08 98.57 100.00 90.57 97.83 100.00 94.12 95.16 99.08 97.92 97.50 98.92 93.10 100.00 98.00 100.00 100.00 97.56 100.00 97.98 100.00 95.37 98.98 98.67 98.51 97.22 98.73 95.24 89.66 97.10 96.77 97.56 94.62 98.53 100.00 97.22 99.33 97.59 99.14 98.94 91.30 97.27 93.94 98.41 98.39 98.04 98.08 94.59 98.86 100.00 98.81 97.06 98.31 98.15 97.73 96.00 100.00 100.00 K jcn_only_AD CG12384,I_chr2R_7245925_7246462,RI_chr2R_7245930_7246231,RI_chr2R_7245930_7246259 chr2R - chr2R_7245930_7246462 chr2R_7245930_7246231 chr2R_7245841_7245929;chr2R_7246463_7246526 1.03 0.52 0.48 2.05 1.46 1.30 1.98 1.14 1.54 1.71 1.40 0.52 0.00 0.60 1.29 1.46 0.74 0.85 0.58 1.65 1.90 2.21 0.25 0.58 0.93 0.00 1.04 1.95 2.93 0.34 8.04 1.08 0.36 1.14 1.33 1.95 1.39 0.62 0.50 0.44 0.00 1.02 0.00 0.00 0.27 0.52 0.65 0.99 1.56 1.47 1.03 1.65 1.67 0.85 1.48 0.66 1.35 0.00 K alternative_acceptor aux chr3R + chr3R_52414_52485 chr3R_52414_52472 chr3R_52252_52413;chr3R_52486_53244 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 98.44 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 98.31 97.22 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754284_15755256 chrX_15754283_15754284;chrX_15755256_15755257 chrX_15754256_15754283;chrX_15755257_15755267 90.00 90.91 90.00 88.24 66.67 80.00 83.33 88.89 90.91 NA 100.00 90.48 96.43 86.36 100.00 81.08 100.00 90.91 91.67 91.18 NA 78.57 83.33 83.33 84.62 77.78 93.33 NA 100.00 76.92 81.82 NA 93.75 88.89 90.00 81.25 94.12 91.67 NA 100.00 NA 95.24 90.00 73.33 NA 82.35 75.00 100.00 82.61 88.89 92.86 90.00 NA NA 91.67 NA 80.00 NA K alternative_donor Cam,I_chr2R_8161049_8161270 chr2R + chr2R_8146964_8147544 chr2R_8146971_8147544 chr2R_8147545_8147693;chr2R_8146944_8146963 0.26 0.00 0.00 0.29 0.23 0.60 1.72 0.25 0.50 0.00 0.70 0.76 0.00 0.41 1.19 0.93 0.21 0.00 0.37 0.91 0.77 1.21 0.26 0.32 1.26 0.00 0.71 0.46 0.49 0.79 0.51 0.00 0.00 0.26 0.73 0.00 0.00 0.00 0.00 0.19 0.89 0.21 0.72 0.24 0.00 0.00 0.54 0.65 0.66 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.39 K jcn_only_AA NijA chr3L - chr3L_10688468_10688728 chr3L_10688516_10688728 chr3L_10688729_10688804;chr3L_10688432_10688467 66.67 76.79 59.09 58.46 57.14 61.76 75.00 78.26 59.72 NA NA 59.09 NA 67.74 66.67 81.01 63.41 58.54 66.67 66.15 75.00 47.17 85.53 61.67 64.10 66.67 65.15 58.06 69.39 61.36 63.08 61.54 73.03 65.38 65.17 73.91 49.02 62.22 71.21 61.86 61.76 76.71 62.50 72.22 66.67 75.18 75.76 65.85 74.49 50.98 67.24 67.35 87.50 81.82 69.77 68.63 70.00 80.98 K alternative_donor CG12567,I_chr2LHet_21570_31347,I_chr2LHet_21570_31874 chr2LHet - chr2LHet_21570_32923 chr2LHet_21570_32572 chr2LHet_21470_21569;chr2LHet_32924_32973 100.00 100.00 100.00 100.00 100.00 100.00 98.55 100.00 98.72 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 98.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 98.82 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 K alternative_acceptor CG7556,I_chrX_19072966_19073032 chrX - chrX_19072281_19073032 chrX_19072966_19073032 chrX_19073033_19073132;chrX_19072073_19072280 0.00 0.00 0.00 0.94 0.00 0.00 1.10 0.00 0.60 0.00 1.33 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.89 0.00 1.35 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor wun,I_chr2R_5291118_5291211,I_chr2R_5297151_5300729,I_chr2R_5297159_5300813 chr2R - chr2R_5290341_5291211 chr2R_5291118_5291211 chr2R_5291212_5291311;chr2R_5290161_5290340 3.33 2.33 3.23 5.26 3.85 3.33 10.81 3.33 3.03 2.38 13.33 4.44 5.00 5.26 6.67 7.69 4.17 11.11 8.33 3.61 11.11 18.46 1.19 1.49 1.47 14.29 1.67 6.25 2.00 2.22 7.41 4.00 3.85 4.65 1.61 15.62 2.30 1.79 0.93 3.85 5.13 3.12 4.76 1.79 1.72 2.60 1.49 3.51 6.82 1.75 2.94 2.17 1.82 1.72 2.94 1.85 0.00 3.39 K jcn_only_AD Aps,I_chr3L_10889978_10890059,I_chr3L_10889978_10890180,I_chr3L_10889978_10890782,I_chr3L_10889978_10890997,I_chr3L_10889978_10891195 chr3L - chr3L_10889978_10891077 chr3L_10889978_10890997 chr3L_10889879_10889977;chr3L_10891078_10891097 0.34 0.00 0.33 1.52 0.38 0.00 0.27 0.34 0.16 0.00 2.38 0.62 0.00 0.00 0.31 0.76 1.30 6.60 0.97 0.63 0.37 1.80 0.00 0.30 2.06 0.60 0.22 1.24 3.30 0.00 0.27 0.40 0.59 0.00 0.00 1.26 0.00 0.36 0.00 0.16 0.00 0.37 0.88 0.00 0.56 0.44 0.00 0.61 0.69 0.38 0.68 0.00 0.00 0.00 0.49 0.00 0.00 0.00 K cassette CG11009,I_chr3L_12844823_12845526,I_chr3L_12845441_12845526 chr3L + chr3L_12844823_12845526;chr3L_12844823_12845715 chr3L_12844823_12845331;chr3L_12845378_12845526,chr3L_12845378_12845715 chr3L_12845332_12845377 chr3L_12844723_12844822;chr3L_12845716_12845816 39.05 32.93 45.68 83.46 30.77 40.00 14.29 40.48 36.72 34.88 45.33 54.89 53.09 29.87 32.73 50.55 43.84 41.67 42.42 40.99 59.02 53.85 27.59 36.19 27.71 19.42 36.36 52.08 10.62 39.05 55.45 45.56 59.85 40.32 38.57 33.71 30.69 28.74 26.32 33.54 45.03 41.07 35.94 34.38 48.12 43.04 40.17 48.57 35.00 47.53 31.58 30.77 17.14 39.29 37.86 41.00 20.83 30.87 K jcn_only_AA CG17082,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_645254_645306;chr2R_645254_645316 chr2R_645254_645312 chr2R_645185_645253;chr2R_645317_645382 0.00 0.00 0.00 0.87 0.00 2.38 1.11 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 2.78 2.38 1.82 2.04 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention Nop60B,I_chr2R_20062491_20062553,I_chr2R_20063248_20063949,F_chr2R_20073291_20073744 chr2R + chr2R_20062491_20062550 chr2R_20062490_20062491;chr2R_20062550_20062551 chr2R_20062404_20062490;chr2R_20062551_20062919 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.62 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.75 0.60 0.00 0.57 0.00 0.00 0.00 0.00 0.89 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG3499,I_chr2R_18772777_18772819 chr2R - chr2R_18772185_18772242 chr2R_18772188_18772242 chr2R_18772243_18772316;chr2R_18771871_18772184 20.27 15.38 19.05 24.56 20.83 14.71 17.19 19.67 21.74 22.22 23.08 24.24 26.67 26.67 18.75 19.12 26.09 12.50 18.42 20.93 18.52 20.00 19.05 21.05 14.81 20.00 16.67 28.26 22.50 26.32 26.53 32.14 24.32 23.21 16.28 25.00 15.15 11.11 18.37 20.65 23.26 20.27 16.67 19.05 31.03 23.81 18.52 23.91 22.89 20.34 16.90 14.58 23.68 20.00 17.65 25.00 18.52 12.82 K jcn_only_AA FucTB chr2L - chr2L_9429289_9429411 chr2L_9429346_9429411 chr2L_9429412_9429589;chr2L_9428774_9429288 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG4901 chr2L + chr2L_10211283_10211450 chr2L_10211283_10211397 chr2L_10211183_10211282;chr2L_10211451_10212081 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 96.97 90.91 92.31 96.88 100.00 93.33 100.00 100.00 100.00 93.33 100.00 97.83 100.00 100.00 100.00 92.31 100.00 100.00 100.00 91.67 84.00 100.00 100.00 94.44 97.92 100.00 100.00 96.15 93.75 100.00 100.00 96.88 96.30 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 96.97 N alternative_acceptor CG12581,I_chr3R_9380_9438 chr3R + chr3R_272_369 chr3R_272_356 chr3R_203_271;chr3R_370_509 100.00 NA NA NA NA NA 50.00 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,RI_chr2R_20289332_20289739,I_chr2R_20289332_20289846,I_chr2R_20289332_20290093 chr2R - chr2R_20289332_20290083;chr2R_20289332_20289739;chr2R_20289332_20289846 chr2R_20289332_20290093 chr2R_20289232_20289331;chr2R_20290094_20290193 0.00 6.25 0.00 6.90 0.00 0.00 0.00 2.33 0.00 10.00 0.00 2.22 0.00 4.55 4.35 0.00 4.00 0.00 0.00 2.22 0.00 4.35 0.00 5.88 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.22 0.00 2.94 0.00 0.00 5.26 4.76 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 12.50 11.11 5.26 K multi_cassette ssp4,I_chr2R_13409412_13410357,RI_chr2R_13409412_13411004,I_chr2R_13409412_13411328,I_chr2R_13409412_13411588,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13409406_13411588 chr2R_13409406_13411004;chr2R_13411077_13411328;chr2R_13411404_13411588 chr2R_13411005_13411076;chr2R_13411329_13411403 chr2R_13409337_13409405;chr2R_13411589_13411688 16.13 14.29 NA 36.36 7.14 NA NA 23.08 12.00 NA 18.18 16.13 NA 7.69 10.00 33.33 28.57 20.00 36.36 20.83 NA 5.00 11.11 13.04 14.29 15.38 36.36 5.26 NA 18.18 27.27 14.29 16.67 20.00 20.00 12.50 19.05 30.00 8.33 8.33 10.00 10.00 NA 22.22 10.00 19.05 NA NA 15.00 28.57 22.22 36.36 NA 14.29 14.29 12.50 NA 30.00 K jcn_only_AA CG4267,I_chr2L_2245495_2245550 chr2L + chr2L_2242592_2242696 chr2L_2242592_2242692 chr2L_2242390_2242591;chr2L_2242697_2242945 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 95.83 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 NA 100.00 NA 100.00 100.00 95.65 100.00 NA 96.88 97.30 97.92 100.00 100.00 100.00 100.00 95.45 NA NA 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor m-cup chr3R - chr3R_12971775_12971841 chr3R_12971778_12971841 chr3R_12971842_12972385;chr3R_12971649_12971774 100.00 100.00 100.00 100.00 100.00 90.91 100.00 92.31 100.00 NA NA 93.33 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 NA 90.00 100.00 92.31 100.00 NA 100.00 NA 91.67 92.86 100.00 100.00 100.00 100.00 94.74 NA 100.00 88.89 100.00 100.00 100.00 100.00 100.00 91.67 88.89 100.00 91.67 100.00 100.00 85.71 NA K intron_retention opa1-like,I_chr2R_10119470_10120234,I_chr2R_10121848_10121900,I_chr2R_10122128_10122197,I_chr2R_10122334_10122393 chr2R - chr2R_10121067_10121121 chr2R_10121066_10121067;chr2R_10121121_10121122 chr2R_10120693_10121066;chr2R_10121122_10121711 0.00 0.00 0.00 0.96 0.00 1.83 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RhoGAP71E,I_chr3L_15583097_15589765 chr3L + chr3L_15595616_15599758 chr3L_15595615_15595616;chr3L_15599758_15599759 chr3L_15594743_15595615;chr3L_15599759_15600439 15.79 16.18 11.27 16.33 12.24 12.79 20.55 20.29 13.33 8.73 10.00 11.95 48.15 17.86 14.93 17.11 18.00 8.47 17.39 13.64 16.28 17.57 23.96 25.76 17.39 14.63 25.76 25.77 15.69 6.82 18.46 11.49 5.77 16.85 14.74 9.89 11.81 12.99 27.03 11.74 7.58 14.29 16.95 11.88 8.65 13.01 16.33 8.56 15.79 28.57 23.46 23.33 15.49 22.22 16.25 23.40 29.03 10.34 K jcn_only_AD CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4839655;chr3R_4839215_4839561;chr3R_4839215_4839851;chr3R_4839215_4839728;chr3R_4839215_4839889 chr3R_4839215_4839799 chr3R_4839038_4839214;chr3R_4839890_4839901 2.33 4.76 4.55 3.33 NA NA NA 0.00 2.33 NA NA 0.00 NA NA NA NA NA NA 0.00 3.33 NA 0.00 0.00 NA NA 9.09 4.00 NA NA NA NA NA NA 4.55 NA NA NA NA NA 8.00 NA 0.00 NA 5.00 NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 4.55 N multi_cassette CG31619,I_chr2L_21725446_21728027 chr2L + chr2L_21719644_21728027 chr2L_21719644_21725067;chr2L_21725446_21727005;chr2L_21727363_21727422;chr2L_21727574_21728027 chr2L_21725068_21725445;chr2L_21727006_21727362;chr2L_21727423_21727573 chr2L_21719514_21719643;chr2L_21728028_21728127 100.00 100.00 100.00 86.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG6659 chrX - chrX_18548224_18548328 chrX_18548223_18548224;chrX_18548328_18548329 chrX_18547964_18548223;chrX_18548329_18548454 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 1.71 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.59 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 K intron_retention cup,I_chr2L_6668135_6668341,CG34310 chr2L + chr2L_6670514_6674300 chr2L_6670513_6670514;chr2L_6674300_6674301 chr2L_6669764_6670513;chr2L_6674301_6674741 0.00 0.00 0.00 2.56 0.00 0.00 0.00 4.88 6.52 NA 4.35 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 4.35 0.00 0.00 2.94 0.00 0.00 K cassette CG32699,I_chrX_9468866_9473514 chrX - chrX_9468866_9473514 chrX_9468866_9468933;chrX_9469080_9473514 chrX_9468934_9469079 chrX_9468766_9468865;chrX_9473515_9473614 100.00 100.00 100.00 95.88 100.00 100.00 98.96 100.00 100.00 100.00 100.00 99.39 100.00 100.00 99.03 99.05 100.00 100.00 100.00 100.00 100.00 100.00 99.24 100.00 98.65 100.00 99.28 100.00 100.00 98.56 96.04 100.00 99.32 100.00 98.85 100.00 99.42 100.00 100.00 99.39 100.00 99.42 100.00 99.08 100.00 98.28 100.00 98.90 100.00 100.00 100.00 100.00 100.00 98.36 99.17 100.00 100.00 100.00 K alternative_acceptor I_chr2R_19695638_19696332,Nxt1,RI_chr2R_19699261_19699317,CG4797 chr2R - chr2R_19699248_19699317 chr2R_19699261_19699317 chr2R_19699318_19699386;chr2R_19699179_19699247 6.50 5.94 6.02 7.53 5.26 4.26 11.11 8.24 4.04 2.80 4.17 5.59 3.64 6.35 3.16 4.55 0.00 3.92 4.05 5.96 7.84 6.93 6.70 8.63 5.68 10.53 7.09 6.33 11.76 7.07 17.48 8.47 5.80 5.71 7.63 8.87 5.08 6.72 8.80 5.29 5.30 6.50 6.52 4.61 8.46 6.83 7.64 5.98 5.30 6.94 8.59 5.88 8.03 6.49 6.59 7.56 7.86 8.12 K intron_retention l(1)G0196,I_chrX_21900456_21903880,RI_chrX_21900456_21904036,I_chrX_21900456_21904601,noncoding_25159,I_chrX_21903160_21903227 chrX + chrX_21900456_21904030 chrX_21900455_21900456;chrX_21904030_21904031 chrX_21900356_21900455;chrX_21904031_21904141 12.90 7.41 11.32 24.00 13.89 13.64 10.13 11.39 14.00 15.79 17.24 24.59 14.29 12.77 11.36 11.84 15.38 4.26 6.90 17.53 9.30 19.15 13.10 14.29 7.32 5.71 21.57 8.70 0.00 19.51 7.25 25.00 18.52 20.83 14.63 21.88 9.09 11.11 6.25 13.64 7.41 13.33 22.58 7.58 12.90 15.52 10.17 26.47 12.96 11.76 9.88 6.98 16.67 7.50 2.99 12.77 8.16 13.79 K alternative_acceptor CG17471,RI_chr4_1213397_1214333,RI_chr4_1213397_1216053,RI_chr4_1214248_1214333,I_chr4_1214293_1214333,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1214248_1214333;chr4_1214293_1214333 chr4_1214281_1214333 chr4_1214334_1214402;chr4_1214193_1214247 100.00 96.30 100.00 90.91 100.00 100.00 98.04 98.04 96.34 100.00 100.00 95.24 96.55 96.43 100.00 93.02 100.00 96.30 97.06 96.30 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 97.96 94.74 91.67 100.00 94.74 100.00 100.00 91.18 98.04 100.00 96.97 100.00 97.56 97.06 96.88 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 97.73 K alternative_donor CG10417,RI_chr2R_1248452_1248523 chr2R - chr2R_1250261_1250567 chr2R_1250261_1250334 chr2R_1250133_1250260;chr2R_1250568_1250611 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 98.04 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 96.97 90.91 100.00 100.00 100.00 100.00 92.31 100.00 100.00 83.33 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 96.67 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Trxr-1 chrX + chrX_8136765_8140126 chrX_8136764_8136765;chrX_8140126_8140127 chrX_8136556_8136764;chrX_8140127_8140472 0.00 0.00 0.00 0.30 0.00 0.00 0.38 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.71 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 K alternative_donor Pk61C,I_chr3L_143454_143514 chr3L + chr3L_143218_143514 chr3L_143454_143514 chr3L_143515_143614;chr3L_142943_143217 4.55 2.44 6.82 4.82 2.17 2.94 10.34 3.41 0.81 6.67 2.13 6.74 3.57 3.92 5.77 4.21 2.70 10.42 5.77 3.19 0.00 6.52 4.65 6.25 4.00 4.08 6.82 16.67 31.25 5.00 4.44 7.69 16.67 4.44 3.23 4.00 2.78 12.50 8.33 5.66 4.55 5.49 5.00 3.57 6.25 2.94 3.45 12.50 5.81 5.88 3.28 2.70 4.55 5.26 3.57 3.33 4.00 6.90 K intron_retention I_chr3L_18892015_18892405,RpL26,I_chr3L_18892244_18892405,I_chr3L_18892340_18892405,I_chr3L_18892434_18892499 chr3L + chr3L_18892340_18892405 chr3L_18892339_18892340;chr3L_18892405_18892406 chr3L_18892334_18892339;chr3L_18892406_18892433 89.18 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 74.19 NA NA NA 100.00 NA NA NA NA NA NA 87.50 87.50 NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA NA 89.47 K intron_retention CG30105 chr2R - chr2R_13479769_13479897 chr2R_13479768_13479769;chr2R_13479897_13479898 chr2R_13479533_13479768;chr2R_13479898_13479911 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 96.55 94.44 100.00 95.83 100.00 100.00 100.00 95.45 100.00 NA 100.00 94.12 100.00 NA 100.00 95.45 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 95.00 100.00 97.14 100.00 100.00 100.00 100.00 95.24 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19562989_19563061 chr2R_19562988_19562989;chr2R_19563061_19563062 chr2R_19562878_19562988;chr2R_19563062_19563231 1.89 0.88 1.77 3.70 2.23 1.43 1.68 1.08 1.81 3.91 0.78 1.54 1.48 1.09 1.33 0.84 1.11 12.11 0.00 0.66 2.05 11.52 2.25 1.27 5.38 6.45 3.06 4.21 6.61 1.89 2.24 5.74 3.28 1.84 3.87 3.68 1.97 1.53 2.00 1.50 9.64 0.88 0.68 1.21 2.62 2.27 1.01 5.84 1.41 1.90 1.97 2.58 1.91 1.26 1.17 1.60 0.44 1.94 K intron_retention Gga chrX + chrX_9495210_9495286 chrX_9495209_9495210;chrX_9495286_9495287 chrX_9495093_9495209;chrX_9495287_9495402 0.00 3.23 0.00 0.00 0.00 4.76 5.71 6.25 2.78 0.00 0.00 0.00 0.00 0.00 7.41 3.57 0.00 7.41 3.85 3.39 7.41 15.00 3.85 0.00 9.52 8.70 14.29 14.29 40.00 3.45 4.35 0.00 0.00 2.27 0.00 0.00 0.00 0.00 4.17 0.00 NA 4.44 NA 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 6.90 0.00 5.56 0.00 K intron_retention zpg chr3L - chr3L_6598677_6598732 chr3L_6598676_6598677;chr3L_6598732_6598733 chr3L_6598375_6598676;chr3L_6598733_6599142 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 3.70 0.00 1.89 0.00 0.00 8.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG8889 chr2R - chr2R_7914657_7914727 chr2R_7914663_7914727 chr2R_7914728_7914987;chr2R_7914547_7914656 12.50 NA NA NA NA NA 7.69 NA 11.11 NA NA 12.50 NA NA NA NA NA NA NA 9.09 NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 6.25 NA NA NA NA NA NA NA NA 13.33 NA NA 14.29 NA NA NA NA NA NA K intron_retention bdg,I_chr2R_11824086_11824186,CEI_chr2R_11826763_11827279 chr2R - chr2R_11815130_11819241 chr2R_11815129_11815130;chr2R_11819241_11819242 chr2R_11814250_11815129;chr2R_11819242_11819419 5.88 0.00 3.12 11.11 0.00 9.09 0.00 8.93 6.85 0.00 0.00 11.94 5.26 5.71 6.82 7.14 5.88 7.14 5.41 6.52 0.00 5.00 3.57 7.55 9.09 11.76 10.34 8.33 0.00 6.90 5.88 7.14 0.00 8.47 6.52 7.89 2.50 5.00 5.41 8.06 0.00 7.35 6.25 0.00 6.25 3.23 6.67 4.76 7.69 0.00 5.71 6.67 NA NA 5.41 7.41 0.00 0.00 K intron_retention CG11523 chr3L - chr3L_22259087_22259175 chr3L_22259086_22259087;chr3L_22259175_22259176 chr3L_22258906_22259086;chr3L_22259176_22259747 94.12 93.33 93.33 96.00 100.00 100.00 95.24 92.68 100.00 NA 92.86 96.77 80.00 94.44 100.00 96.97 100.00 100.00 90.00 87.10 100.00 84.62 88.89 100.00 NA 94.12 100.00 NA 93.75 92.31 95.00 84.62 96.00 96.88 88.89 84.62 90.00 NA 83.33 84.00 86.67 97.14 100.00 NA 95.83 91.67 100.00 88.57 100.00 100.00 90.91 90.91 88.89 90.00 94.12 93.75 100.00 98.33 K alternative_acceptor CG32138 chr3L + chr3L_14062497_14063021 chr3L_14062497_14062991 chr3L_14062186_14062496;chr3L_14063022_14063741 98.11 98.73 96.08 98.28 97.96 97.73 98.59 98.73 98.55 91.07 100.00 99.21 98.11 98.00 96.30 98.53 100.00 88.89 98.18 97.74 98.28 98.67 99.17 96.08 96.77 98.18 98.63 100.00 95.74 98.28 96.49 97.37 97.78 98.72 98.33 100.00 97.76 97.70 98.99 96.15 89.80 95.49 91.49 98.81 90.57 98.53 97.85 90.32 99.00 96.67 96.61 98.33 98.59 100.00 95.16 98.85 96.21 92.31 K intron_retention CG12567,I_chr2LHet_21570_31874 chr2LHet - chr2LHet_21374_21435 chr2LHet_21373_21374;chr2LHet_21435_21436 chr2LHet_21308_21373;chr2LHet_21436_21569 41.38 NA 46.67 39.29 46.15 40.00 28.21 41.38 45.16 NA 30.77 39.29 63.64 46.15 56.25 45.45 38.46 41.67 43.48 40.91 NA NA 53.85 41.67 30.77 23.53 58.82 NA NA NA 29.17 NA NA 44.12 NA 30.77 NA 30.77 33.33 42.11 NA 47.83 42.11 33.33 NA 25.00 NA NA 50.00 NA 50.00 35.71 NA NA 22.73 35.71 NA NA K intron_retention CG33558,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2816342_2816577 chr2R_2816341_2816342;chr2R_2816577_2816578 chr2R_2816242_2816341;chr2R_2816578_2816778 5.71 4.88 0.00 5.26 10.00 NA 17.65 3.70 7.04 4.00 0.00 6.52 NA 9.52 12.90 NA 16.67 12.50 9.09 8.70 0.00 1.85 2.80 5.41 0.00 NA 4.76 0.00 0.00 6.82 11.11 7.41 0.00 7.89 4.65 7.69 6.52 4.55 7.41 6.56 0.00 11.11 10.53 5.77 1.04 3.51 5.56 3.03 7.84 3.81 6.38 7.41 5.88 3.17 8.70 5.26 5.71 0.00 K intron_retention CG1753,noncoding_25029 chrX + chrX_20918440_20918583 chrX_20918439_20918440;chrX_20918583_20918584 chrX_20918217_20918439;chrX_20918584_20919625 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.42 0.27 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.17 0.59 0.00 0.00 0.00 0.38 0.65 0.98 0.40 0.00 0.00 0.00 0.42 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 1.31 K cassette Mmp2,I_chr2R_5503009_5545098,noncoding_5512,F_chr2R_5529263_5530709,F_chr2R_5530982_5545098,F_chr2R_5549824_5554869 chr2R - chr2R_5503009_5554869 chr2R_5503009_5530709;chr2R_5530982_5554869 chr2R_5530710_5530981 chr2R_5502983_5503008;chr2R_5554870_5554963 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.65 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 5.00 0.00 2.15 1.67 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.94 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 K alternative_acceptor CG2478,I_chr2L_20653491_20653552 chr2L - chr2L_20653491_20653552 chr2L_20653499_20653552 chr2L_20653553_20653652;chr2L_20653391_20653490 92.86 100.00 88.24 87.50 93.33 91.67 90.00 97.06 97.67 80.00 100.00 95.65 92.31 90.91 94.12 94.74 92.86 90.00 100.00 100.00 100.00 96.43 92.86 81.82 87.50 100.00 100.00 100.00 90.91 90.00 93.75 88.89 95.45 100.00 92.31 88.89 93.75 87.50 NA 90.00 91.67 100.00 92.31 100.00 91.67 91.67 NA 80.00 100.00 100.00 90.91 90.91 NA NA 94.12 NA 100.00 91.67 K jcn_only_AD LSm7 chr2L - chr2L_16742443_16742634;chr2L_16742443_16742662 chr2L_16742443_16742625 chr2L_16742326_16742442;chr2L_16742663_16742986 95.12 93.18 93.51 92.03 93.55 92.54 96.88 93.20 99.44 94.87 93.22 96.77 98.16 96.23 94.81 96.04 91.84 97.70 94.95 95.28 90.32 97.96 93.24 96.59 97.92 93.94 97.53 90.91 93.75 95.92 98.72 97.78 89.66 95.62 98.18 NA 93.07 96.25 95.80 92.59 93.65 95.65 96.88 94.12 92.00 90.43 96.72 91.67 96.25 97.89 98.98 98.04 94.87 98.36 88.29 98.08 93.99 91.04 K alternative_donor CG10359,CG10357 chr3L + chr3L_3613883_3614069 chr3L_3613961_3614069 chr3L_3614070_3614253;chr3L_3613749_3613882 0.00 0.00 0.00 1.72 5.00 0.00 0.00 2.27 2.00 6.67 14.29 0.00 0.00 0.00 0.00 2.86 0.00 4.76 0.00 5.88 10.53 0.00 0.00 0.00 7.14 0.00 0.00 NA 4.35 NA 2.00 0.00 0.00 2.38 0.00 NA 0.00 0.00 0.00 0.00 5.00 4.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 NA NA 3.85 5.88 2.50 0.00 K alternative_last_exon sina chr3L + chr3L_16847053_16849396 chr3L_16847053_16847119 chr3L_16849397_16852050 chr3L_16847120_16847625 chr3L_16846848_16847052 94.74 95.24 95.24 97.44 93.33 94.12 97.22 97.87 98.21 92.86 94.74 95.74 95.65 96.00 96.30 95.45 94.74 94.12 96.55 94.44 93.33 94.74 96.88 95.65 88.89 94.74 91.30 91.67 93.75 95.65 95.00 91.67 96.15 98.04 93.75 95.24 92.00 94.12 91.67 96.97 93.33 97.50 91.67 95.83 84.62 95.45 94.12 96.55 97.96 88.24 96.55 94.44 93.75 91.67 96.55 93.33 81.25 100.00 K cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27784850_27805244;chr3R_27795508_27801169;chr3R_27784850_27801169;chr3R_27795508_27805244 chr3R_27795508_27798223,chr3R_27784850_27798223;chr3R_27798276_27805244,chr3R_27798276_27801169 chr3R_27798224_27798275 chr3R_27784757_27784849;chr3R_27805245_27805341 4.30 NA NA 5.88 NA NA NA 0.00 7.69 NA NA 0.00 6.67 NA 0.00 0.00 NA NA 0.00 4.76 NA NA NA NA NA 0.00 6.25 NA NA NA 0.00 NA NA 5.56 NA NA 7.69 NA NA 0.00 NA 3.45 7.69 NA NA NA NA 14.29 3.85 0.00 7.14 NA NA NA 12.50 NA NA NA K intron_retention CG32982,I_chr2L_9127467_9148754,EF_chr2L_9135385_9148841,F_chr2L_9149162_9154658 chr2L + chr2L_9162709_9163140 chr2L_9162708_9162709;chr2L_9163140_9163141 chr2L_9162363_9162708;chr2L_9163141_9163660 0.00 0.00 0.00 11.11 0.00 5.00 0.00 0.00 4.84 0.00 0.00 4.08 NA 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 2.06 4.00 0.00 3.45 0.00 5.08 3.77 4.69 0.00 6.45 0.00 2.56 2.70 2.94 5.00 0.00 0.00 3.33 0.00 0.00 0.00 NA 0.00 0.00 1.67 3.28 2.13 2.22 0.00 3.03 2.70 4.76 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor Nos,I_chr2L_10826086_10826539 chr2L - chr2L_10812355_10812463 chr2L_10812415_10812463 chr2L_10812464_10812494;chr2L_10812311_10812354 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor bgm,RI_chr2L_14017027_14018034 chr2L + chr2L_14017027_14018034 chr2L_14017038_14018034 chr2L_14018035_14018134;chr2L_14016927_14017026 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA K intron_retention CG11779,CG5835,I_chr3R_14982295_14982380 chr3R - chr3R_14977336_14979117 chr3R_14977335_14977336;chr3R_14979117_14979118 chr3R_14977211_14977335;chr3R_14979118_14979355 0.00 NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 6.45 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 K intron_retention YL-1,CG16743 chr2L + chr2L_10971258_10971316 chr2L_10971257_10971258;chr2L_10971316_10971317 chr2L_10970957_10971257;chr2L_10971317_10971978 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.88 0.00 0.00 3.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 3.92 2.94 0.00 0.00 2.70 5.26 5.26 8.93 0.00 0.00 0.00 4.17 0.00 0.00 0.00 2.50 0.00 0.00 0.98 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Pli,I_chr3R_19691378_19715415 chr3R - chr3R_19714842_19715415 chr3R_19714914_19715415 chr3R_19715416_19715515;chr3R_19714779_19714841 100.00 NA 100.00 100.00 NA NA 100.00 100.00 96.97 NA NA 100.00 NA NA 100.00 96.30 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 94.29 96.88 NA 96.30 NA NA NA 100.00 100.00 NA NA NA NA NA 95.65 NA NA 100.00 K mutually_exclusive babo chr2R + chr2R_4842357_4842463,chr2R_4842673_4846611;chr2R_4842357_4844533,chr2R_4844662_4846611 chr2R_4842357_4843217,chr2R_4843364_4846611 chr2R_4842464_4842672;chr2R_4844534_4844661 chr2R_4843218_4843363 chr2R_4842239_4842356;chr2R_4846612_4846839 48.09 54.55 40.00 56.25 50.00 36.36 31.71 50.00 45.24 55.56 57.14 45.31 66.67 52.94 42.86 53.12 13.33 45.45 45.00 66.67 50.00 14.29 46.43 47.62 40.00 40.00 52.17 NA 40.00 42.86 54.17 60.00 45.45 57.58 50.00 62.50 54.55 41.18 54.55 31.82 NA 48.57 46.67 52.17 0.00 40.00 50.00 53.33 42.86 50.00 52.17 60.00 28.57 NA 42.11 40.00 12.50 62.50 K alternative_donor CG15347,I_chrX_8353371_8353552,I_chrX_8353371_8354203,I_chrX_8353497_8353552 chrX - chrX_8353371_8354798 chrX_8353371_8353552 chrX_8353271_8353370;chrX_8354799_8354949 0.00 0.00 0.00 0.77 0.00 0.00 1.06 0.43 0.29 0.00 0.00 0.43 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.07 0.29 0.00 0.00 0.00 0.32 0.71 0.47 0.00 0.00 0.00 0.00 0.34 0.47 0.93 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.27 0.23 0.00 0.00 0.00 0.47 0.00 0.00 0.00 K intron_retention tra2,REFI_chr2R_10491644_10491701 chr2R - chr2R_10491634_10491701 chr2R_10491633_10491634;chr2R_10491701_10491702 chr2R_10491620_10491633;chr2R_10491702_10491801 19.62 NA 21.43 30.77 NA NA 4.17 27.78 0.00 NA NA 19.23 NA NA NA 6.67 NA NA 15.38 17.24 NA 28.57 28.57 45.45 NA 36.36 75.00 NA NA NA 33.33 NA NA NA 25.00 15.38 13.33 10.53 NA 20.00 NA 30.77 NA NA NA 11.76 20.00 NA 17.86 NA 7.69 NA NA NA NA 7.14 19.05 23.53 N intron_retention CG2765,RI_chr2R_20849027_20852094,E_chr2R_20849271_20852090,E_chr2R_20851190_20852094 chr2R - chr2R_20851994_20852094 chr2R_20851993_20851994;chr2R_20852094_20852095 chr2R_20851933_20851993;chr2R_20852095_20852190 79.70 72.97 83.10 100.00 74.19 85.11 69.23 69.44 71.43 100.00 100.00 65.12 100.00 81.58 73.68 100.00 71.11 100.00 80.00 67.53 81.25 100.00 81.63 69.44 100.00 100.00 81.48 100.00 54.84 67.65 80.43 100.00 79.41 79.41 82.50 66.67 71.88 75.68 73.68 71.43 100.00 78.02 71.43 75.00 NA 100.00 100.00 68.29 74.07 100.00 77.08 100.00 NA NA 75.00 NA NA 100.00 K jcn_only_AD sick chr2L + chr2L_19929355_19954552 chr2L_19946703_19954552 chr2L_19954553_19956399 24.00 NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA NA 23.08 NA 12.24 27.27 30.00 NA NA NA NA 14.29 NA NA NA 13.51 NA NA NA 33.33 NA NA NA NA 24.00 NA NA NA NA NA 41.67 20.83 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG6623,I_chr3R_11040813_11040964,I_chr3R_11042070_11042139 chr3R - chr3R_11042070_11042139 chr3R_11042081_11042139 chr3R_11042140_11042239;chr3R_11041970_11042069 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 95.24 NA 100.00 93.75 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 NA 93.33 100.00 90.00 100.00 91.67 92.31 NA 100.00 100.00 80.00 100.00 100.00 100.00 100.00 91.67 88.89 88.89 92.31 95.65 100.00 100.00 100.00 92.86 100.00 100.00 88.89 88.89 100.00 88.89 92.86 NA 87.50 100.00 100.00 100.00 94.44 100.00 K intron_retention shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9754809_9757364 chr2R_9754808_9754809;chr2R_9757364_9757365 chr2R_9754798_9754808;chr2R_9757365_9757464 5.26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette Eps-15,I_chr2R_20660319_20660496 chr2R - chr2R_20660319_20660734 chr2R_20660319_20660496;chr2R_20660527_20660734 chr2R_20660497_20660526 chr2R_20660219_20660318;chr2R_20660735_20660822 74.29 69.57 77.50 46.25 68.18 78.79 32.43 74.00 72.00 78.26 75.00 85.00 91.30 70.83 82.35 71.11 78.95 67.86 78.26 85.88 82.61 74.29 65.00 80.28 78.57 37.84 77.55 100.00 51.22 73.81 60.00 90.00 67.11 74.58 80.00 47.92 82.19 84.44 79.10 79.49 63.16 77.78 65.38 73.91 66.67 72.41 75.00 66.67 73.85 78.12 76.27 82.35 62.79 80.00 60.00 72.22 62.26 63.16 K intron_retention TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748981_19750012 chr2R_19748980_19748981;chr2R_19750012_19750013 chr2R_19748884_19748980;chr2R_19750013_19750013 84.62 86.36 82.61 85.37 81.82 83.33 91.67 76.92 93.51 77.78 89.47 82.35 89.66 83.33 75.86 81.63 86.21 85.19 80.65 81.25 88.89 85.00 91.67 80.95 90.48 84.38 94.74 91.67 77.27 88.24 57.14 65.00 80.65 86.79 100.00 95.00 93.33 85.71 73.53 83.33 86.96 84.62 80.95 93.75 90.00 80.00 76.47 80.00 88.52 84.00 77.78 68.75 90.00 92.86 88.57 72.00 85.71 77.27 K jcn_only_AD CG31301,I_chr3R_11172776_11172930,RI_chr3R_11173123_11173185 chr3R + chr3R_11173123_11173185 chr3R_11173128_11173185 chr3R_11173186_11173254;chr3R_11173059_11173122 100.00 100.00 97.73 98.94 100.00 97.37 100.00 99.05 99.04 100.00 100.00 98.90 95.00 95.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.68 100.00 100.00 98.08 100.00 100.00 100.00 100.00 100.00 96.95 100.00 100.00 100.00 100.00 100.00 98.48 100.00 98.82 98.96 100.00 100.00 100.00 97.97 100.00 100.00 98.23 100.00 97.14 95.74 97.96 98.18 98.68 100.00 100.00 99.62 K cassette RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12922514_12924321 chr2R_12922514_12923159;chr2R_12923913_12924321 chr2R_12923160_12923912 chr2R_12922340_12922513;chr2R_12924322_12924406 98.94 98.33 100.00 98.99 97.92 96.43 97.70 98.90 99.32 97.92 97.06 100.00 96.36 98.28 98.33 100.00 98.08 100.00 100.00 99.21 100.00 98.61 99.16 100.00 98.33 96.49 100.00 100.00 100.00 100.00 100.00 100.00 98.10 97.00 96.83 100.00 98.36 98.44 98.94 99.19 100.00 100.00 100.00 96.84 100.00 100.00 97.56 99.05 98.23 98.11 97.85 98.21 100.00 100.00 98.57 100.00 96.97 98.04 K multi_cassette CG32521,CREF_chrX_21082827_21152068,EF_chrX_21094675_21152068,CG1722 chrX - chrX_21082827_21152072 chrX_21082827_21094606;chrX_21094675_21150208;chrX_21150214_21152072 chrX_21094607_21094674;chrX_21150209_21150213 chrX_21082727_21082826;chrX_21152073_21152168 8.39 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA K intron_retention CG3744,I_chr3R_20701248_20701968 chr3R - chr3R_20698134_20698375 chr3R_20698133_20698134;chr3R_20698375_20698376 chr3R_20697941_20698133;chr3R_20698376_20698598 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 5.26 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.26 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette cp309,I_chr3L_15074145_15074432 chr3L - chr3L_15066431_15067783;chr3L_15066295_15067783 chr3L_15066295_15067424,chr3L_15066431_15067424;chr3L_15067593_15067783 chr3L_15067425_15067592 chr3L_15066244_15066294;chr3L_15067784_15068947 22.66 21.43 41.67 19.05 NA 30.00 19.05 12.50 24.14 15.00 13.33 36.36 NA 16.67 30.77 33.33 18.18 0.00 16.67 22.73 30.77 25.00 43.75 28.57 37.50 12.50 17.65 NA NA 46.15 37.50 NA 33.33 43.75 20.00 18.75 33.33 36.36 NA 17.65 NA 29.17 18.18 22.22 NA NA 42.86 NA 22.58 NA 18.75 NA NA NA 18.75 NA NA NA K alternative_donor CG9932,I_chr2L_13025498_13027193,I_chr2L_13031395_13035824 chr2L - chr2L_13025498_13026528;chr2L_13025498_13027344 chr2L_13025498_13027065 chr2L_13025398_13025497;chr2L_13027345_13027744 22.69 13.79 35.48 28.57 16.67 35.71 27.78 41.94 22.06 12.24 40.48 35.11 55.81 24.53 26.79 28.21 35.42 22.92 39.29 25.44 29.55 17.39 19.19 15.94 15.69 21.95 22.08 18.42 24.07 24.36 30.19 25.64 22.69 25.53 24.62 16.67 15.00 8.47 16.04 4.59 24.44 27.87 16.22 21.79 23.21 20.31 16.67 22.00 27.78 19.35 18.75 16.67 17.02 18.92 30.65 19.15 16.67 28.00 K intron_retention I_chr3R_8822346_8822403,CG7518 chr3R + chr3R_8832937_8833113 chr3R_8832936_8832937;chr3R_8833113_8833114 chr3R_8832068_8832936;chr3R_8833114_8833120 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 95.83 100.00 100.00 100.00 96.55 K jcn_only_AD Mtch,RI_chr3L_184729_185366,E_chr3L_185249_186012,EI_chr3L_185308_185366,I_chr3L_185367_185925 chr3L + chr3L_185304_185366;chr3L_184729_185366 chr3L_185308_185366 chr3L_185367_185441;chr3L_184713_184728 0.41 0.00 0.00 0.00 0.00 0.62 0.46 0.74 0.31 2.56 0.75 0.00 0.71 0.70 0.00 0.81 1.43 0.00 0.51 0.00 0.00 0.61 0.00 0.44 0.00 0.00 0.53 1.37 1.92 0.00 2.13 0.00 0.41 0.40 0.00 0.00 0.47 0.00 0.53 0.34 0.44 0.32 1.39 0.00 0.00 0.71 0.00 0.00 0.99 1.19 0.00 1.44 0.00 1.12 0.49 0.00 1.63 1.01 K intron_retention CtBP chr3R + chr3R_8837881_8845063 chr3R_8837880_8837881;chr3R_8845063_8845064 chr3R_8837730_8837880;chr3R_8845064_8845536 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 K jcn_only_AA CG12582 chr3R + chr3R_29885_29987;chr3R_29885_29934 chr3R_29885_29940 chr3R_29816_29884;chr3R_29988_30053 3.02 3.02 4.15 4.51 2.09 4.27 3.30 4.51 2.99 3.23 2.76 2.24 3.02 2.31 3.62 4.70 4.04 3.59 3.93 3.17 3.04 2.38 2.16 2.54 3.23 2.79 2.61 3.93 2.95 3.84 6.34 4.10 2.57 1.34 3.36 10.69 2.43 1.91 2.50 3.33 2.51 3.02 2.00 2.59 1.61 2.22 1.86 2.80 3.89 3.17 2.78 2.52 3.91 2.96 3.26 3.50 1.22 3.69 K alternative_donor CG17508,RI_chr2R_1496995_1497120 chr2R + chr2R_1496337_1496517;chr2R_1496341_1496517;chr2R_1496303_1496517 chr2R_1496288_1496517 chr2R_1496518_1496994;chr2R_1496153_1496287 0.00 0.00 0.00 0.00 0.00 0.00 1.96 1.22 0.00 0.00 0.00 1.14 0.00 0.00 0.00 1.10 3.85 5.88 1.64 1.22 0.00 0.00 0.00 2.70 3.70 2.17 2.56 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 2.33 0.00 3.57 0.00 0.00 0.00 1.96 0.00 2.08 0.00 0.00 0.00 2.08 0.00 0.00 0.00 K jcn_only_AD Dek chr2R + chr2R_12743809_12744310 chr2R_12743821_12744310 chr2R_12744311_12744557;chr2R_12743780_12743808 7.27 7.07 6.06 10.76 6.59 8.51 7.37 4.40 8.42 5.15 16.67 5.49 7.48 10.10 6.56 8.76 7.27 13.83 6.41 5.89 12.50 5.07 4.83 8.03 4.10 6.45 8.60 4.17 7.74 7.98 12.24 4.15 5.87 5.16 2.70 12.22 3.94 7.69 8.23 7.56 5.05 7.34 6.25 7.27 4.45 10.07 11.11 6.31 5.95 15.09 10.06 6.25 2.60 9.52 9.92 11.76 13.33 5.24 K intron_retention Dpit47 chr2R - chr2R_2548747_2548803 chr2R_2548746_2548747;chr2R_2548803_2548804 chr2R_2548142_2548746;chr2R_2548804_2549667 4.41 2.53 4.92 3.37 7.55 10.45 3.90 7.23 4.72 5.00 0.00 3.23 3.77 6.15 5.49 6.06 5.56 5.06 3.51 4.65 3.77 5.88 5.10 6.09 7.14 14.49 5.06 3.39 14.63 2.82 7.14 1.00 3.41 4.00 8.96 3.39 3.77 2.90 3.48 2.96 4.60 5.44 3.64 8.22 2.94 5.13 4.00 4.41 3.51 2.70 5.32 2.94 3.45 2.83 4.76 6.96 1.14 3.23 K intron_retention scaf6,EI_chr3L_17037760_17037808 chr3L - chr3L_17035141_17035202 chr3L_17035140_17035141;chr3L_17035202_17035203 chr3L_17034794_17035140;chr3L_17035203_17035373 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 K intron_retention I_chr2R_2754447_2755071,Spn4,CG9454 chr2R - chr2R_2764032_2764725 chr2R_2764031_2764032;chr2R_2764725_2764726 chr2R_2763778_2764031;chr2R_2764726_2764867 75.00 86.67 75.00 65.22 90.00 83.33 66.67 88.89 78.95 NA 75.00 78.95 76.92 61.54 75.00 90.91 88.89 NA 84.62 77.78 NA NA 63.16 70.59 66.67 90.00 83.33 87.50 NA 90.00 89.47 58.33 NA 72.00 75.00 57.14 88.89 NA 68.75 75.00 83.33 84.00 75.00 90.91 60.00 70.00 52.63 NA 79.17 66.67 78.57 NA 63.64 75.00 71.43 92.31 61.11 55.56 K jcn_only_AD lin chr2R + chr2R_4802513_4802569;chr2R_4802505_4802569 chr2R_4802509_4802569 chr2R_4802570_4805741;chr2R_4802033_4802504 3.70 0.00 2.33 4.55 7.41 0.00 2.94 5.77 2.17 9.52 5.71 5.62 2.70 8.11 3.92 2.17 13.33 6.25 3.12 3.88 13.04 0.00 1.16 4.11 4.00 4.44 4.00 2.22 0.00 4.55 2.22 3.70 5.56 2.99 3.85 8.82 3.37 5.33 5.93 8.16 2.38 6.67 2.86 5.56 2.00 16.67 0.00 5.15 7.04 2.38 2.74 0.00 0.00 0.00 0.00 0.00 3.03 1.72 K intron_retention CG6904,I_chr3R_10970962_10971422,I_chr3R_10970962_10972151,I_chr3R_10970962_10972185,I_chr3R_10970962_10972512,I_chr3R_10970962_10972522 chr3R - chr3R_10970962_10973196 chr3R_10970961_10970962;chr3R_10973196_10973197 chr3R_10970862_10970961;chr3R_10973197_10973329 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 K jcn_only_AA Gprk2 chr3R + chr3R_27231679_27259180 chr3R_27231679_27236075 chr3R_27230999_27231678 56.60 60.00 76.32 64.15 52.50 73.53 38.58 54.26 62.50 NA 41.03 45.68 56.60 68.75 58.82 64.77 63.83 56.25 75.00 68.85 47.06 51.11 71.11 61.36 36.00 54.55 44.44 42.31 44.74 46.88 63.89 NA 35.90 55.67 72.73 29.03 61.11 56.00 68.00 62.50 43.75 51.92 69.77 65.91 NA 47.73 NA 61.67 66.67 NA 62.50 50.00 NA NA 63.01 NA 52.38 33.33 K alternative_last_exon Snx6,RI_chr2L_8218680_8218853,I_chr2L_8230332_8238998 chr2L - chr2L_8218680_8219115 chr2L_8218872_8219115 chr2L_8218570_8218679 chr2L_8218803_8218871 chr2L_8219116_8219215 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Asx chr2R + chr2R_10391643_10392672 chr2R_10391875_10392672 chr2R_10392673_10392987;chr2R_10391514_10391642 98.36 96.30 100.00 100.00 NA 95.45 98.00 98.25 98.41 NA 100.00 97.96 84.62 100.00 93.75 97.10 100.00 95.65 96.15 98.59 100.00 100.00 97.67 100.00 95.45 95.24 96.67 100.00 100.00 100.00 96.77 NA 100.00 98.36 100.00 94.59 NA NA 100.00 96.30 NA 100.00 NA 100.00 NA NA 91.30 100.00 100.00 NA 97.87 NA NA NA 95.00 NA NA NA K alternative_donor cact,RI_chr2L_16314859_16315116,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16325055_16325577;chr2L_16325055_16325493 chr2L_16325055_16325587 chr2L_16324333_16325054;chr2L_16325588_16325598 0.00 0.00 0.00 1.54 0.00 0.00 2.44 0.00 1.22 0.00 3.03 1.56 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 2.44 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 2.94 0.00 0.00 0.00 0.00 1.49 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N cassette JhI-21,I_chr2L_12055360_12055714 chr2L - chr2L_12053925_12054302 chr2L_12053925_12053981;chr2L_12054085_12054302 chr2L_12053982_12054084 chr2L_12053657_12053924;chr2L_12054303_12054498 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 98.17 100.00 91.39 100.00 100.00 100.00 100.00 100.00 100.00 92.92 100.00 100.00 98.48 99.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG30187,F_chr2R_18804786_18805198,F_chr2R_18805721_18805778,I_chr2R_18820842_18820922 chr2R - chr2R_18804993_18805056 chr2R_18804992_18804993;chr2R_18805056_18805057 chr2R_18804874_18804992;chr2R_18805057_18805072 9.41 8.96 8.96 8.82 12.50 10.42 14.55 8.59 7.01 6.25 9.80 7.46 9.46 12.70 11.76 10.11 3.28 6.67 12.33 7.65 10.00 13.79 13.79 7.59 21.88 25.00 17.65 26.83 31.03 8.00 20.19 0.00 9.76 7.94 9.09 16.28 7.81 7.81 8.47 11.86 15.79 6.40 8.93 7.07 13.95 7.46 5.56 11.11 11.40 9.41 9.09 12.20 6.67 11.63 9.52 6.78 8.70 9.09 K alternative_donor CG3635,I_chr2L_22179420_22179486 chr2L + chr2L_22175603_22179486 chr2L_22179420_22179486 chr2L_22179487_22179566;chr2L_22175591_22175602 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette f-cup,I_chr3R_9523147_9523556,EI_chr3R_9523187_9523556,I_chr3R_9524004_9524059,EI_chr3R_9524613_9524789 chr3R - chr3R_9523187_9523556 chr3R_9523187_9523244;chr3R_9523369_9523556 chr3R_9523245_9523368 chr3R_9523087_9523186;chr3R_9523557_9523656 100.00 100.00 100.00 95.65 100.00 100.00 95.24 100.00 100.00 100.00 94.44 97.14 100.00 100.00 100.00 94.74 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention RpL31,CG1827 chr2R + chr2R_5474734_5474951 chr2R_5474733_5474734;chr2R_5474951_5474952 chr2R_5474727_5474733;chr2R_5474952_5475211 0.00 1.10 0.50 0.00 0.00 0.00 0.00 0.42 1.12 0.00 0.00 1.08 0.00 0.00 0.00 1.34 0.00 1.26 0.00 0.49 0.00 0.69 1.35 0.00 0.00 0.00 8.47 0.98 2.29 0.00 1.51 0.00 0.00 0.00 0.00 1.90 0.81 2.78 0.61 0.00 0.83 0.25 0.00 0.00 0.00 1.21 1.10 0.30 0.48 0.00 0.87 0.00 0.41 0.00 0.00 0.56 1.30 0.00 K intron_retention CG6045,I_chr3R_11373181_11373245 chr3R - chr3R_11369392_11369450 chr3R_11369391_11369392;chr3R_11369450_11369451 chr3R_11368495_11369391;chr3R_11369451_11370159 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516706_21517821;chr3L_21516330_21517821;chr3L_21517168_21517821;chr3L_21516722_21517821;chr3L_21516501_21517821;chr3L_21516918_21517821;chr3L_21516343_21517821;chr3L_21516728_21517821 chr3L_21516399_21517821 chr3L_21517822_21517920;chr3L_21516311_21516329 7.69 12.50 9.09 11.76 10.00 7.14 4.35 9.09 5.00 33.33 0.00 11.76 16.67 0.00 11.11 7.69 16.67 7.14 0.00 4.17 0.00 33.33 8.33 0.00 25.00 0.00 12.50 0.00 7.69 0.00 5.00 0.00 0.00 5.56 20.00 0.00 20.00 11.11 14.29 9.52 0.00 7.41 12.50 15.38 0.00 16.67 40.00 0.00 4.55 25.00 10.00 0.00 0.00 50.00 9.09 20.00 0.00 0.00 K jcn_only_AA CG17471,RI_chr4_1213397_1214333,RI_chr4_1213397_1216053,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1213275_1213331;chr4_1213279_1213331 chr4_1213289_1213331 chr4_1213332_1213341;chr4_1213122_1213274 0.00 2.13 0.00 3.23 NA 0.00 0.00 3.12 1.90 NA NA 6.76 2.04 0.00 0.00 3.28 0.00 3.33 0.00 0.00 NA NA 0.00 3.64 0.00 NA 4.55 NA NA 0.00 2.38 4.35 0.00 3.19 2.22 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 4.88 0.00 3.12 6.85 0.00 0.94 0.00 1.37 0.00 0.00 0.00 2.94 3.08 3.17 2.56 K alternative_donor cul-2,I_chr2L_21659273_21659705,I_chr2L_21659761_21659839,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21659273_21659839 chr2L_21659761_21659839 chr2L_21659840_21659939;chr2L_21659173_21659272 4.59 3.49 2.78 10.77 1.72 2.86 7.11 8.82 5.62 1.52 4.84 5.06 11.94 8.47 2.15 10.11 3.45 1.67 5.41 5.16 2.99 4.46 2.78 3.17 4.59 1.19 5.37 6.71 9.64 7.22 5.00 5.41 11.11 5.22 5.33 4.59 2.44 3.15 3.94 5.31 8.00 3.50 6.12 3.15 5.26 6.25 2.94 24.44 3.76 2.60 3.57 4.49 4.44 1.82 2.47 2.60 3.49 16.67 K alternative_donor CG5793,I_chr3R_16953555_16953842 chr3R + chr3R_16953555_16953842 chr3R_16953777_16953842 chr3R_16953843_16953939;chr3R_16953466_16953554 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 100.00 NA 100.00 NA 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG9987,Rab9 chr2L + chr2L_19432064_19432123 chr2L_19432063_19432064;chr2L_19432123_19432124 chr2L_19430653_19432063;chr2L_19432124_19432451 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.35 0.00 0.79 0.88 1.33 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.64 2.34 7.07 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.33 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Adgf-A,Msi,F_chr3L_17749926_17757161 chr3L - chr3L_17747522_17757161 chr3L_17747521_17747522;chr3L_17757161_17757162 chr3L_17746567_17747521;chr3L_17757162_17757241 5.26 6.00 3.70 5.88 10.20 5.41 5.88 2.94 5.43 1.75 7.27 4.58 5.00 6.33 4.94 4.00 5.56 2.50 3.92 6.22 7.14 3.62 10.26 6.38 7.04 3.28 11.36 10.14 1.14 1.89 6.38 0.00 2.52 5.31 2.70 8.82 5.26 6.25 8.20 2.86 1.91 5.07 3.17 4.03 3.70 2.87 2.94 2.82 11.45 7.69 6.38 4.05 5.63 8.00 8.86 6.25 0.00 0.99 K jcn_only_AD CG3860,I_chr2R_19880382_19880479,I_chr2R_19880577_19880631,RI_chr2R_19882285_19882350 chr2R - chr2R_19880577_19880637 chr2R_19880577_19880631 chr2R_19880480_19880576;chr2R_19880638_19880731 3.51 10.34 0.00 0.00 8.70 NA 2.22 5.56 4.08 NA NA 4.65 4.76 NA 3.23 3.33 4.35 4.76 4.76 0.00 NA 10.00 2.70 0.00 9.52 13.64 8.57 5.00 0.00 5.00 6.06 NA NA 4.44 NA 0.00 3.45 5.00 0.00 0.00 3.57 10.00 4.76 0.00 0.00 0.00 0.00 NA 9.30 2.63 0.00 0.00 5.00 3.33 10.71 2.78 0.00 0.00 K intron_retention CG10321,I_chr2R_17522487_17522896 chr2R + chr2R_17522487_17522885 chr2R_17522486_17522487;chr2R_17522885_17522886 chr2R_17522387_17522486;chr2R_17522886_17526194 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 6.06 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.23 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K jcn_only_AA Hrb87F chr3R - chr3R_9482848_9484183 chr3R_9484020_9484183 chr3R_9484184_9484235;chr3R_9482571_9482847 99.64 100.00 100.00 99.62 99.62 100.00 100.00 99.44 99.70 100.00 100.00 99.60 100.00 99.56 99.14 99.74 100.00 99.10 99.28 99.89 100.00 100.00 99.78 99.33 99.60 99.06 99.72 99.68 99.64 99.89 99.61 99.64 99.90 99.21 99.64 99.37 99.75 99.65 99.60 99.51 99.90 99.57 98.64 99.28 99.78 99.60 99.56 99.82 99.87 100.00 100.00 99.52 98.96 99.28 99.40 99.64 99.70 98.89 K intron_retention CG8858,I_chr2R_8087747_8088193 chr2R - chr2R_8086183_8086307 chr2R_8086182_8086183;chr2R_8086307_8086308 chr2R_8086052_8086182;chr2R_8086308_8086385 0.00 NA 0.00 7.14 0.00 NA 7.14 6.25 2.13 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K alternative_donor CG31278,noncoding_15893,RI_chr3R_6533509_6533568 chr3R - chr3R_6533509_6533568;chr3R_6533509_6533579 chr3R_6533509_6533960 chr3R_6533409_6533508;chr3R_6533961_6534040 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 6.25 0.00 0.00 7.14 0.00 7.14 0.00 0.00 0.00 3.57 7.69 0.00 4.76 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 5.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 4.76 3.85 0.00 5.00 5.88 0.00 0.00 0.00 0.00 K jcn_only_AA Gel,I_chr3R_63540_64006,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_63540_64024;chr3R_63540_64006 chr3R_63540_63897 chr3R_63440_63539;chr3R_64025_64099 0.49 0.00 0.50 0.00 0.78 0.21 1.40 0.30 0.16 0.00 0.00 0.19 0.87 0.18 0.13 0.90 0.39 0.17 0.49 0.49 0.19 0.58 0.82 0.87 2.94 3.23 0.71 0.00 0.00 0.67 1.26 0.00 0.80 0.33 0.75 1.39 0.63 0.00 0.22 0.64 2.14 0.28 0.66 0.48 0.68 1.29 1.34 0.49 0.35 0.86 0.65 1.56 0.25 0.80 0.13 0.55 0.21 0.38 K intron_retention wol chr2L - chr2L_8302699_8302757 chr2L_8302698_8302699;chr2L_8302757_8302758 chr2L_8302524_8302698;chr2L_8302758_8302984 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.71 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA Smr,I_chrX_12625852_12636351,REI_chrX_12635675_12636351 chrX - chrX_12625938_12636351;chrX_12625852_12636351;chrX_12635693_12636351 chrX_12635675_12636351 chrX_12636352_12636441 92.59 94.44 100.00 89.71 88.46 97.92 86.96 96.63 91.53 100.00 95.65 90.54 100.00 96.55 96.55 87.21 96.43 96.30 92.59 90.41 95.83 NA 91.67 NA NA 91.67 NA 100.00 NA 92.31 88.89 NA 100.00 94.03 100.00 NA NA NA NA 97.87 NA 90.48 88.89 81.82 NA 92.00 NA 88.89 89.74 NA 95.24 87.50 NA NA 94.59 NA NA 86.11 K cassette Parp chr3RHet + chr3RHet_1964749_2025472 chr3RHet_1964749_2018687;chr3RHet_2019258_2025472 chr3RHet_2018688_2019257 chr3RHet_1964716_1964748;chr3RHet_2025473_2025629 100.00 92.86 100.00 95.45 90.00 93.33 95.83 98.65 96.08 NA 100.00 96.77 95.45 100.00 100.00 96.08 95.24 100.00 95.65 96.15 100.00 100.00 87.50 100.00 100.00 90.91 100.00 NA 85.71 100.00 96.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 NA 100.00 88.89 100.00 96.97 80.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG7766,I_chrX_8993495_8994545,I_chrX_8991338_8991387 chrX - chrX_8991547_8991788 chrX_8991546_8991547;chrX_8991788_8991789 chrX_8991388_8991546;chrX_8991789_8992040 0.00 NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA 4.17 NA 9.09 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA 5.56 NA NA NA NA NA 0.00 NA NA NA 0.00 7.14 NA NA NA NA NA 0.00 NA K intron_retention Cg25C chr2L + chr2L_5033951_5034012 chr2L_5033950_5033951;chr2L_5034012_5034013 chr2L_5032500_5033950;chr2L_5034013_5034981 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Adk1,I_chr3L_12194597_12195884,I_chr3L_12194963_12195884,I_chr3L_12197507_12197558 chr3L - chr3L_12194597_12196818 chr3L_12194596_12194597;chr3L_12196818_12196819 chr3L_12194497_12194596;chr3L_12196819_12197320 0.00 0.00 NA NA NA NA NA 0.00 8.70 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 0.00 4.17 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 5.88 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 K jcn_only_AD E_chr4_592469_594231,Ephrin,I_chr4_595055_597604,RI_chr4_596272_596341 chr4 + chr4_592737_594238;chr4_592646_594238;chr4_592490_594238;chr4_592593_594238;chr4_592410_594238;chr4_592798_594238 chr4_592469_594238 chr4_594239_594331;chr4_592404_592409 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention PpV chrX - chrX_6266597_6266684 chrX_6266596_6266597;chrX_6266684_6266685 chrX_6266309_6266596;chrX_6266685_6266861 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 1.34 0.00 0.00 0.00 0.00 0.00 5.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Vha55 chr3R - chr3R_8453298_8453399 chr3R_8453298_8453361 chr3R_8453171_8453297;chr3R_8453400_8453468 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.52 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD kuz,E_chr2L_13550294_13551106,CE_chr2L_13558833_13594255,F_chr2L_13635998_13637287,RI_chr2L_13636519_13636577,I_chr2L_13636762_13637287 chr2L + chr2L_13636762_13637287;chr2L_13636844_13637287 chr2L_13636002_13637287 chr2L_13637288_13637387 68.49 75.00 46.46 22.58 85.19 81.94 40.86 73.17 63.31 60.49 33.82 19.05 79.66 54.55 56.58 41.59 63.49 32.22 64.29 58.24 31.18 74.51 76.19 73.98 60.87 31.63 69.07 68.49 63.37 77.08 56.34 67.80 42.01 75.97 75.82 51.82 71.19 75.68 78.53 76.19 58.44 72.02 62.32 81.51 52.69 60.56 76.06 59.00 75.15 73.81 77.45 77.78 78.16 83.08 68.66 85.19 74.77 66.67 N jcn_only_AA HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13164676_13165514;chrX_13164646_13165514 chrX_13164727_13165514 chrX_13165515_13165622;chrX_13164424_13164645 0.00 0.00 0.00 0.00 0.00 0.00 5.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG14995,I_chr3L_4095875_4097205,I_chr3L_4096047_4096903 chr3L - chr3L_4095123_4095199 chr3L_4095147_4095199 chr3L_4095200_4095293;chr3L_4094504_4095122 3.70 0.00 NA NA NA NA 0.00 0.00 5.56 NA NA 0.00 0.00 NA 14.29 0.00 NA NA NA 9.68 NA 3.70 0.00 5.00 NA NA 0.00 NA 5.26 0.00 0.00 13.33 0.00 12.50 NA NA 0.00 NA NA 6.45 3.33 4.76 NA 4.00 6.67 2.86 5.00 3.70 4.76 5.56 0.00 0.00 NA 5.88 5.56 4.76 11.76 3.45 K intron_retention CG9581,E_chrX_20063603_20063826,RE_chrX_20065682_20066069 chrX - chrX_20063450_20063506 chrX_20063449_20063450;chrX_20063506_20063507 chrX_20062075_20063449;chrX_20063507_20063602 0.00 0.00 0.00 21.74 0.00 0.00 3.45 0.00 8.51 0.00 0.00 5.77 0.00 0.00 0.00 0.00 0.00 0.00 4.55 8.89 4.55 16.67 0.00 0.00 0.00 0.00 8.82 0.00 13.04 0.00 5.26 0.00 0.00 2.78 5.56 3.45 1.72 1.82 0.00 4.55 4.35 0.00 NA 0.00 2.94 0.00 0.00 5.71 0.00 0.00 2.56 0.00 0.00 5.13 0.00 0.00 0.00 0.00 K cassette gus,I_chr2R_1009158_1009345,RI_chr2R_1009158_1011540,I_chr2R_1009346_1015730 chr2R - chr2R_1009158_1015730;chr2R_1009158_1009487 chr2R_1009158_1009277;chr2R_1009346_1015730,chr2R_1009346_1009487 chr2R_1009278_1009345 chr2R_1009058_1009157;chr2R_1015731_1015742 8.62 9.68 11.11 16.67 9.52 8.00 2.08 6.06 13.04 NA 5.00 10.87 12.50 6.45 6.45 5.97 6.67 10.53 11.90 7.55 6.67 NA 10.34 12.00 12.50 3.45 9.52 7.69 0.00 17.65 8.11 21.43 NA 8.00 4.55 NA 10.00 13.33 NA 3.70 6.67 10.00 10.71 10.53 6.67 11.11 10.71 15.79 8.16 9.09 6.67 7.69 5.56 5.56 4.65 11.54 4.76 13.64 K intron_retention B4,I_chr2L_13513474_13549131,I_chr2L_13547133_13549131,I_chr2L_13547162_13547692,I_chr2L_13547304_13549131 chr2L - chr2L_13547133_13549131 chr2L_13547132_13547133;chr2L_13549131_13549132 chr2L_13547062_13547132;chr2L_13549132_13549231 94.12 87.50 81.25 95.00 NA 91.67 94.74 100.00 95.65 100.00 100.00 87.50 88.89 100.00 92.31 100.00 91.67 100.00 92.86 93.75 91.67 100.00 91.67 85.71 100.00 88.89 92.31 94.44 93.75 94.44 94.12 100.00 92.00 94.74 100.00 100.00 92.86 NA 92.86 100.00 91.67 100.00 100.00 100.00 90.91 92.86 70.00 95.65 100.00 93.33 100.00 100.00 NA NA 93.33 81.82 92.86 100.00 K cassette ben chrX + chrX_13890557_13892127 chrX_13890557_13890648;chrX_13890768_13892127 chrX_13890649_13890767 chrX_13890387_13890556;chrX_13892128_13892800 1.23 0.00 1.69 2.19 0.00 0.00 2.21 0.00 1.42 0.00 0.00 1.23 1.25 0.79 0.67 0.75 0.00 0.83 1.48 1.46 2.22 0.00 0.78 0.90 0.00 1.71 1.12 1.56 1.34 1.37 0.69 1.90 2.22 1.55 2.20 1.12 1.82 0.00 1.12 2.45 1.41 0.83 2.04 0.00 1.26 1.22 2.20 1.48 0.85 0.00 1.75 1.15 2.38 1.06 0.00 1.75 1.32 1.64 K intron_retention CG17370,RI_chr3R_21707998_21709823,RI_chr3R_21707998_21710705,RI_chr3R_21714780_21715376 chr3R + chr3R_21707998_21711103 chr3R_21707997_21707998;chr3R_21711103_21711104 chr3R_21707898_21707997;chr3R_21711104_21711551 0.00 0.00 0.00 5.66 3.45 0.00 7.69 8.00 2.86 2.86 0.00 2.22 0.00 0.00 0.00 7.27 0.00 9.52 3.45 5.45 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.17 7.69 0.00 0.00 0.00 NA 0.00 2.17 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 K intron_retention RhoGAP71E,I_chr3L_15583097_15589765 chr3L + chr3L_15594396_15594734 chr3L_15594395_15594396;chr3L_15594734_15594735 chr3L_15594333_15594395;chr3L_15594735_15595615 12.70 12.70 7.55 21.54 8.06 7.27 18.18 20.73 16.16 7.25 13.21 12.60 24.24 20.93 16.67 12.28 13.04 10.34 14.89 16.50 14.00 38.71 11.54 10.67 19.57 13.04 18.99 32.00 9.43 7.69 15.00 9.09 11.11 14.14 16.00 15.38 11.22 8.33 7.41 17.50 19.44 12.50 18.92 10.14 8.11 8.70 5.56 11.21 12.00 5.56 13.51 13.51 5.26 13.33 13.70 11.76 10.53 6.85 K intron_retention trio,I_chr3L_999683_1009321 chr3L - chr3L_1003654_1003727 chr3L_1003653_1003654;chr3L_1003727_1003728 chr3L_1003396_1003653;chr3L_1003728_1003821 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.37 0.00 0.74 1.03 0.00 0.00 0.78 0.00 2.68 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.68 0.00 0.00 0.61 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.62 0.80 0.00 0.44 0.90 0.00 0.00 0.00 0.00 0.61 0.00 K jcn_only_AA mle chr2R - chr2R_1867143_1867547 chr2R_1867426_1867547 chr2R_1867548_1867556 6.90 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.90 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor E_chr4_592469_594231,Ephrin,I_chr4_595055_597604,RI_chr4_596272_596341 chr4 + chr4_592737_594238;chr4_592646_594238;chr4_592490_594238;chr4_592593_594238;chr4_592469_594238;chr4_592798_594238 chr4_592410_594238 chr4_594239_594331;chr4_592404_592409 0.00 0.00 0.00 0.00 0.00 16.67 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 4.55 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 5.26 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention CG12945,I_chr3R_5615604_5615859,I_chr3R_5615807_5615858,RI_chr3R_5616467_5616560 chr3R - chr3R_5615988_5616041 chr3R_5615987_5615988;chr3R_5616041_5616042 chr3R_5615860_5615987;chr3R_5616042_5616182 0.00 0.00 0.00 10.10 0.00 0.00 4.00 0.00 0.00 0.00 0.00 1.16 0.00 2.13 0.00 3.80 0.00 0.00 1.82 2.61 0.00 1.59 3.92 0.00 0.00 15.38 4.65 5.00 16.13 0.00 4.62 0.00 1.54 3.03 0.00 5.56 NA 0.00 0.00 0.00 3.28 5.26 2.70 0.00 0.00 4.35 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14425,Sxl,CG14425_Sxl,CEFI_chrX_6981717_6984166,CEF_chrX_6984538_6992033 chrX - chrX_6982783_6985706 chrX_6982782_6982783;chrX_6985706_6985707 chrX_6982611_6982782;chrX_6985707_6985745 39.05 NA NA 40.00 NA NA 33.33 46.67 38.10 NA NA 50.00 NA 54.55 NA 46.15 NA NA NA 17.65 NA NA NA NA NA NA NA NA NA NA 20.00 NA NA 36.84 NA NA NA NA NA 25.00 NA 25.00 NA NA NA NA NA 55.00 43.75 NA NA NA NA NA NA NA NA NA K intron_retention tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_561069_561129 chr3R_561068_561069;chr3R_561129_561130 chr3R_560887_561068;chr3R_561130_561279 0.00 0.00 0.72 1.63 2.50 0.00 1.83 2.05 0.33 0.00 0.00 0.45 0.00 0.76 0.00 0.00 0.90 1.43 0.00 1.09 0.00 0.00 0.00 1.35 0.00 0.00 1.59 2.67 2.53 0.00 0.00 2.27 0.00 0.44 1.94 0.00 0.00 0.00 0.00 0.00 2.86 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.85 0.00 1.16 1.06 0.91 1.31 0.81 K jcn_only_AD CG1718 chrX - chrX_21163958_21164368;chrX_21163958_21164390 chrX_21163958_21164182 chrX_21163741_21163957;chrX_21164391_21164557 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA 0.00 NA K jcn_only_AD exba,RI_chr3R_1425087_1425302,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1425087_1426209;chr3R_1425087_1425759;chr3R_1425087_1426009 chr3R_1425087_1426125 chr3R_1424987_1425086;chr3R_1426210_1426225 1.56 3.45 1.92 3.45 0.00 0.00 0.00 2.15 2.42 2.70 0.00 0.00 2.50 0.00 1.56 2.35 0.00 0.00 1.56 1.67 0.00 1.79 4.35 3.70 2.94 0.00 0.00 0.00 0.00 1.75 2.67 0.00 1.23 0.96 2.33 0.00 0.00 0.00 0.00 1.87 3.45 3.88 2.00 0.00 0.00 3.30 2.13 5.45 2.44 0.00 3.23 2.50 0.00 2.78 0.00 0.00 0.00 2.70 K alternative_donor Sep4,I_chrX_16588453_16588650,I_chrX_16588453_16588983 chrX - chrX_16588405_16588650;chrX_16588405_16588983 chrX_16588405_16589150 chrX_16588353_16588404;chrX_16589151_16589177 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG2065 chr2R + chr2R_3551440_3551537 chr2R_3551439_3551440;chr2R_3551537_3551538 chr2R_3551288_3551439;chr2R_3551538_3551801 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 4.65 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2392054 chrX_2388671_2389073;chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054 chrX_2389074_2389271;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2388641_2388670;chrX_2392055_2392148 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Moca-cyp chr3R + chr3R_24167182_24167348 chr3R_24167181_24167182;chr3R_24167348_24167349 chr3R_24167094_24167181;chr3R_24167349_24167903 57.14 60.87 68.42 80.95 80.00 65.00 68.42 73.33 68.97 45.45 70.00 62.50 62.50 61.11 62.96 62.50 69.23 57.14 75.00 71.88 54.55 62.50 50.00 60.87 38.89 NA 44.12 52.63 36.36 70.00 19.35 50.00 50.00 82.14 39.13 33.33 34.48 52.63 44.12 53.49 38.46 72.73 76.92 47.83 43.48 43.33 57.14 55.81 70.97 40.00 48.57 52.63 62.50 40.91 77.78 44.44 63.16 50.00 K intron_retention CG1703,Met chrX + chrX_11506138_11506208 chrX_11506137_11506138;chrX_11506208_11506209 chrX_11505974_11506137;chrX_11506209_11507297 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.21 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 1.58 0.00 0.00 0.00 0.81 0.00 0.00 0.00 1.90 4.04 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 1.37 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG6923 chr3R - chr3R_7574682_7575419 chr3R_7574682_7574963 chr3R_7574512_7574681;chr3R_7575420_7575455 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 NA 100.00 90.00 100.00 85.71 100.00 91.67 83.33 100.00 100.00 88.89 100.00 NA 100.00 100.00 75.00 83.33 100.00 100.00 100.00 100.00 100.00 NA NA 81.82 100.00 100.00 100.00 100.00 83.33 85.71 NA 90.91 100.00 100.00 NA 75.00 NA 100.00 90.91 80.00 85.71 100.00 NA NA 100.00 100.00 100.00 NA K intron_retention cni,RI_chr2L_16309575_16309999,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16310641_16310690 chr2L_16310640_16310641;chr2L_16310690_16310691 chr2L_16310441_16310640;chr2L_16310691_16310700 87.50 86.36 75.86 86.08 90.32 87.88 92.00 86.30 88.46 90.91 88.46 85.48 82.14 82.86 82.22 86.21 87.88 87.50 84.62 86.05 83.33 83.33 88.89 85.19 83.33 97.73 90.00 87.50 100.00 NA 91.43 91.67 100.00 86.96 88.89 NA 80.95 95.45 82.14 96.15 93.33 76.67 87.50 91.67 100.00 93.33 83.33 94.12 87.84 66.67 73.08 84.00 NA NA 83.33 87.88 81.25 83.33 K intron_retention Vps13,I_chr2R_3464510_3464571 chr2R + chr2R_3463431_3463491 chr2R_3463430_3463431;chr2R_3463491_3463492 chr2R_3462870_3463430;chr2R_3463492_3463650 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 5.88 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K alternative_acceptor CG1265,I_chr3L_4255296_4255550 chr3L + chr3L_4255296_4255353;chr3L_4255296_4255609;chr3L_4255296_4255457 chr3L_4255296_4255550 chr3L_4255196_4255295;chr3L_4255610_4255650 3.12 1.69 3.33 4.35 2.56 2.22 5.56 2.60 3.92 6.06 2.70 2.35 12.12 2.70 6.82 5.63 2.38 3.92 4.35 3.01 2.27 3.39 3.12 1.30 0.00 7.32 3.03 0.00 6.90 2.70 5.88 0.00 8.00 4.00 8.33 0.00 3.90 3.39 2.60 2.86 3.03 1.98 0.00 2.82 3.70 2.60 3.33 5.71 4.88 3.33 3.23 3.92 0.00 0.00 4.92 0.00 4.71 2.13 K jcn_only_AD Amun,I_chrX_11607839_11608272,I_chrX_11607842_11608105,I_chrX_11607842_11608125,RI_chrX_11607842_11608272 chrX - chrX_11607839_11608590 chrX_11607839_11608507 chrX_11607788_11607838;chrX_11608591_11608810 47.62 NA 47.62 NA NA NA NA NA 51.06 NA NA 37.50 NA NA 42.86 NA NA NA NA 40.74 NA 27.27 70.00 NA NA 47.62 NA NA 61.90 30.30 NA 24.00 21.31 60.87 NA 47.62 66.67 NA NA 25.00 53.33 66.67 NA NA 47.62 50.00 NA 24.07 62.50 NA NA NA NA NA NA NA NA 14.86 K intron_retention CG9186 chr3L - chr3L_1312661_1312719 chr3L_1312660_1312661;chr3L_1312719_1312720 chr3L_1311719_1312660;chr3L_1312720_1313121 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CaMKII,I_chr4_1059085_1065781,RI_chr4_1061742_1064093,RI_chr4_1061742_1065781,I_chr4_1061989_1065781,RI_chr4_1063745_1065781,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1064151_1065781 chr4_1064150_1064151;chr4_1065781_1065782 chr4_1064098_1064150;chr4_1065782_1065874 0.00 0.00 0.00 0.00 NA 0.00 11.11 0.00 0.00 NA NA 0.00 NA 0.00 NA 7.32 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA 5.26 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 5.26 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 K jcn_only_AD nuf,RI_chr3L_14222180_14223121,RI_chr3L_14209985_14223275,I_chr3L_14222054_14222918,I_chr3L_14224426_14225035 chr3L + chr3L_14206304_14223275;chr3L_14223207_14223275 chr3L_14219504_14223275 chr3L_14223276_14223369 90.00 97.22 NA NA NA NA NA 92.31 92.31 86.36 NA 84.00 NA NA 90.48 NA NA NA NA 90.91 NA 86.67 88.68 86.36 80.95 NA 92.11 78.26 93.02 100.00 84.00 NA 80.00 NA NA NA 85.71 91.43 92.31 74.42 95.83 96.77 NA 92.50 NA 90.62 90.91 90.00 77.78 76.74 90.32 90.62 75.00 76.19 NA 88.89 90.00 76.19 K intron_retention Snx6,RI_chr2L_8218680_8218853,I_chr2L_8230332_8238998 chr2L - chr2L_8220435_8220622 chr2L_8220434_8220435;chr2L_8220622_8220623 chr2L_8220045_8220434;chr2L_8220623_8220737 0.57 1.14 0.00 0.00 0.00 1.48 0.42 0.48 0.56 0.00 1.54 0.83 0.00 1.65 0.00 0.00 0.00 0.91 0.00 1.28 0.93 0.57 0.47 1.23 1.79 0.00 0.50 0.74 0.67 1.29 1.77 0.00 1.18 1.02 1.43 0.00 1.18 0.00 0.60 1.77 1.11 0.74 1.87 0.57 0.00 3.01 0.00 1.94 0.82 0.00 1.88 0.00 0.00 0.00 0.00 1.26 0.00 0.00 K alternative_acceptor Ect4,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8100050_8101738 chr3L_8100050_8101385 chr3L_8099116_8100049;chr3L_8101739_8101745 90.45 88.89 90.00 NA 83.33 85.71 80.00 92.31 93.75 91.67 NA 100.00 NA 100.00 100.00 71.43 87.50 80.00 88.89 86.96 100.00 100.00 89.47 87.50 100.00 100.00 88.89 87.50 84.00 80.00 80.00 100.00 85.00 92.31 92.31 73.33 100.00 100.00 100.00 94.12 100.00 93.33 100.00 92.86 75.00 95.83 90.91 90.00 100.00 88.89 94.12 85.71 90.91 91.67 90.00 89.47 85.71 70.00 K cassette Nedd4,I_chr3L_17535485_17536604,I_chr3L_17536186_17536604,I_chr3L_17536713_17536777,I_chr3L_17536813_17536863 chr3L + chr3L_17534504_17536863 chr3L_17534504_17536604;chr3L_17536713_17536863 chr3L_17536605_17536712 chr3L_17534419_17534503;chr3L_17536864_17536877 99.56 98.92 98.97 94.55 98.80 98.78 92.24 99.34 100.00 98.92 100.00 100.00 100.00 98.77 98.88 100.00 100.00 98.72 97.56 99.56 98.63 100.00 100.00 99.14 98.88 100.00 99.31 100.00 99.12 99.08 100.00 100.00 100.00 99.32 100.00 100.00 99.47 100.00 98.34 100.00 98.53 99.54 100.00 100.00 100.00 100.00 98.80 100.00 98.99 100.00 100.00 98.95 100.00 98.46 100.00 100.00 100.00 98.84 K intron_retention sec23,I_chr3R_1474873_1475080,I_chr3R_1477727_1478102 chr3R + chr3R_1477525_1477702 chr3R_1477524_1477525;chr3R_1477702_1477703 chr3R_1476976_1477524;chr3R_1477703_1477723 35.29 NA NA 75.00 NA NA NA 46.15 34.78 NA NA 21.05 30.77 60.00 37.50 NA NA 26.67 NA 26.47 NA 33.33 47.06 26.32 NA NA 46.15 47.06 54.55 36.36 NA 14.29 28.57 40.00 NA NA 38.89 NA 31.58 NA 25.00 41.67 NA NA 12.00 26.67 46.67 45.45 42.86 16.13 42.11 NA NA 35.00 NA 35.29 26.09 NA K alternative_acceptor CG3967,RI_chr3L_9408567_9410728,RI_chr3L_9412100_9412179 chr3L - chr3L_9407866_9408507 chr3L_9408397_9408507 chr3L_9408508_9408566;chr3L_9407481_9407865 100.00 100.00 100.00 95.24 85.71 100.00 93.33 94.44 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 85.71 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 88.89 75.00 100.00 94.74 85.71 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 90.00 100.00 100.00 100.00 88.89 94.12 90.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 K intron_retention CG8298 chr2R + chr2R_7877016_7877071 chr2R_7877015_7877016;chr2R_7877071_7877072 chr2R_7876887_7877015;chr2R_7877072_7878437 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA N intron_retention spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20334731_20339244 chr2L_20334730_20334731;chr2L_20339244_20339245 chr2L_20334627_20334730;chr2L_20339245_20339375 65.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 42.86 NA NA NA NA NA 100.00 65.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor frtz chr2L - chr2L_1712543_1712611 chr2L_1712543_1712596 chr2L_1712145_1712542;chr2L_1712612_1713108 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA 87.50 NA NA 100.00 NA NA NA NA 100.00 NA 100.00 90.91 100.00 NA NA 100.00 NA 100.00 100.00 NA 85.71 NA 100.00 100.00 100.00 100.00 100.00 100.00 93.33 NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 92.86 90.91 100.00 100.00 100.00 NA NA 100.00 NA K intron_retention Spc105R chr3L + chr3L_20799475_20799533 chr3L_20799474_20799475;chr3L_20799533_20799534 chr3L_20799025_20799474;chr3L_20799534_20799958 0.00 NA 0.00 4.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 3.03 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG33558,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,EI_chr2R_2820947_2821570,CREI_chr2R_2832933_2850384 chr2R - chr2R_2817876_2818978;chr2R_2817876_2818567 chr2R_2817876_2819347 chr2R_2817851_2817875;chr2R_2819348_2819447 21.13 45.00 NA 45.45 NA NA NA NA 12.50 NA NA 26.83 NA NA NA NA NA NA NA 25.00 NA NA 23.19 36.17 20.00 NA NA NA 25.00 NA NA 20.83 7.89 27.27 NA 5.00 22.73 26.09 24.32 19.15 4.35 32.35 NA 9.09 11.11 4.44 26.67 3.03 NA 31.25 21.43 17.39 13.04 29.63 NA 17.14 11.11 9.09 K alternative_acceptor ced-6,I_chr2R_5322831_5322898,I_chr2R_5324717_5324924,I_chr2R_5328640_5328696 chr2R - chr2R_5322831_5322898 chr2R_5322840_5322898 chr2R_5322899_5322998;chr2R_5322765_5322830 98.96 97.44 98.05 97.37 98.11 98.10 98.76 98.33 99.06 98.11 98.13 99.39 97.85 100.00 99.54 98.87 98.75 99.40 99.54 99.68 100.00 98.08 99.08 99.51 96.72 99.56 98.09 96.47 98.23 99.04 98.27 99.03 98.80 96.81 99.35 99.33 99.04 98.69 98.92 99.33 99.30 99.45 99.36 99.22 100.00 99.49 99.51 98.54 99.18 99.52 98.70 99.11 98.18 98.75 98.47 99.50 98.96 98.55 K intron_retention CG31812 chr2L + chr2L_16730217_16730270 chr2L_16730216_16730217;chr2L_16730270_16730271 chr2L_16729780_16730216;chr2L_16730271_16730855 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA Prat chr3R - chr3R_3737336_3737415 chr3R_3737339_3737415 chr3R_3737416_3737540;chr3R_3735310_3737335 80.70 79.31 84.93 80.49 75.71 78.21 88.31 77.78 82.32 80.00 80.00 77.04 79.07 78.18 85.87 81.11 79.25 81.16 80.00 77.63 88.57 87.21 80.70 78.90 76.74 79.55 86.44 94.29 78.02 88.89 79.03 89.06 83.33 87.38 74.29 86.21 77.69 81.19 85.12 74.59 73.58 78.12 81.25 80.00 81.55 86.76 85.92 73.20 84.96 75.41 80.52 90.14 83.17 82.46 85.44 83.70 80.53 81.10 K intron_retention E(z) chr3L - chr3L_10628148_10628215 chr3L_10628147_10628148;chr3L_10628215_10628216 chr3L_10627675_10628147;chr3L_10628216_10628785 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.02 3.08 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention br,I_chrX_1517022_1518170 chrX + chrX_1530054_1530128 chrX_1530053_1530054;chrX_1530128_1530129 chrX_1529865_1530053;chrX_1530129_1530582 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.77 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 2.86 2.38 0.00 6.67 1.33 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG17471,RI_chr4_1213397_1214333,RI_chr4_1213397_1216053,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1213275_1213331;chr4_1213279_1213331 chr4_1213289_1213331 chr4_1213332_1213341;chr4_1213122_1213274 0.00 0.00 0.00 7.69 NA 0.00 5.26 5.41 2.38 NA NA 6.67 0.00 0.00 0.00 4.26 0.00 0.00 0.00 0.00 NA NA 7.69 0.00 9.09 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 2.94 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 4.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 K alternative_acceptor rhea,I_chr3L_8563622_8564067 chr3L + chr3L_8549072_8554458 chr3L_8549072_8554434 chr3L_8548854_8549071;chr3L_8554459_8554717 0.00 0.00 0.00 1.02 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K alternative_last_exon cryptocephal,noncoding_4181,I_chr2L_21312209_21314626 chr2L + chr2L_21311033_21311913,chr2L_21311033_21311752 chr2L_21311033_21311192 chr2L_21311914_21312043 chr2L_21311193_21311487 chr2L_21310948_21311032 5.23 7.54 5.63 1.20 4.44 5.53 2.76 2.85 4.67 4.44 4.63 3.66 3.37 4.09 4.09 11.76 4.44 7.73 3.46 5.07 4.94 3.89 4.26 7.83 4.04 1.68 3.80 7.61 13.04 7.63 5.23 13.22 4.62 2.93 6.43 12.66 6.13 8.43 7.27 11.66 3.12 4.02 4.92 5.43 11.19 8.43 11.63 5.84 3.52 7.99 7.53 6.78 9.45 11.73 3.94 10.53 5.90 3.81 K alternative_acceptor CG6569,RI_chr3R_17693077_17693126,I_chr3R_17694702_17694760 chr3R - chr3R_17692987_17693126 chr3R_17693049_17693126 chr3R_17693127_17693226;chr3R_17692977_17692986 1.00 0.00 NA NA NA NA 13.79 0.00 6.25 NA NA NA NA NA NA 5.88 NA 0.00 0.00 0.00 NA 7.41 6.67 0.00 NA NA NA 6.45 NA NA 2.00 NA NA NA NA NA 0.00 NA 6.25 NA NA 4.17 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention T-cp1 chr3R - chr3R_18315581_18315643 chr3R_18315580_18315581;chr3R_18315643_18315644 chr3R_18315186_18315580;chr3R_18315644_18316534 0.00 0.00 0.00 0.18 0.36 0.00 0.00 0.19 0.32 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.21 0.00 0.00 1.04 1.33 0.32 0.00 0.00 0.00 0.00 0.60 0.00 0.25 0.00 0.00 0.26 0.00 0.00 0.29 0.00 0.00 0.36 0.17 0.00 0.00 0.17 0.67 0.36 0.00 0.26 0.00 0.25 0.20 0.00 0.00 K intron_retention CG12054 chr3R + chr3R_27051799_27051862 chr3R_27051798_27051799;chr3R_27051862_27051863 chr3R_27051535_27051798;chr3R_27051863_27051971 0.00 1.89 0.00 0.00 0.00 0.00 0.00 1.54 1.74 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 6.45 0.85 0.00 6.56 1.08 0.00 3.12 0.00 4.17 4.05 35.00 0.00 0.00 3.12 0.00 1.18 0.00 0.00 0.00 1.33 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Arc-p34 chr2L + chr2L_20422237_20422301 chr2L_20422237_20422298 chr2L_20422145_20422236;chr2L_20422302_20422411 0.23 0.29 0.23 0.30 0.00 0.00 0.41 0.27 0.15 0.33 0.45 0.00 0.00 0.26 0.00 0.44 0.00 0.35 0.47 0.17 0.38 0.00 0.00 0.89 0.00 0.00 0.41 0.00 1.02 0.00 0.17 0.20 0.38 0.52 0.00 0.22 0.23 0.00 0.23 0.31 0.00 0.00 0.69 0.24 0.33 0.56 0.19 0.13 0.61 0.25 0.20 0.60 0.00 0.20 0.59 0.39 0.27 0.29 K intron_retention CG17746,I_chr3L_3238983_3250343 chr3L - chr3L_3237665_3237741 chr3L_3237664_3237665;chr3L_3237741_3237742 chr3L_3236805_3237664;chr3L_3237742_3238072 1.61 0.00 2.00 1.83 0.00 0.00 1.89 0.81 1.26 0.00 2.90 1.52 0.00 2.99 2.94 4.08 0.00 0.00 2.11 2.30 0.00 3.92 0.00 2.30 2.70 0.00 6.80 12.50 4.00 2.22 0.00 0.00 0.00 2.19 3.45 0.00 1.89 0.00 1.92 4.10 0.00 0.70 0.00 2.50 1.68 2.46 0.00 1.61 3.25 4.76 1.08 3.57 0.00 0.00 0.00 0.00 2.56 0.64 K intron_retention CG7546 chr3L + chr3L_7509151_7509215 chr3L_7509150_7509151;chr3L_7509215_7509216 chr3L_7508971_7509150;chr3L_7509216_7509646 0.00 1.03 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 1.64 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ns3,CG32808 chrX - chrX_1356346_1356405 chrX_1356345_1356346;chrX_1356405_1356406 chrX_1356002_1356345;chrX_1356406_1356489 1.49 2.04 4.17 5.26 0.00 0.00 3.77 0.00 2.78 1.82 0.00 4.24 0.00 6.06 0.00 0.00 0.00 4.35 2.70 1.89 0.00 2.74 5.41 2.44 4.17 0.00 4.35 4.88 25.76 1.41 3.85 0.00 0.00 1.49 0.00 1.27 4.35 2.38 0.97 0.00 3.61 2.56 0.00 0.00 0.00 2.44 2.50 1.96 3.66 0.88 1.35 0.00 0.00 1.30 1.54 1.41 0.00 1.24 K intron_retention SNF1A chrX + chrX_1269789_1269894 chrX_1269788_1269789;chrX_1269894_1269895 chrX_1269580_1269788;chrX_1269895_1270220 21.74 32.14 15.79 48.00 17.14 20.00 31.25 16.36 16.90 25.00 16.13 17.57 20.00 9.09 19.23 21.74 15.38 13.33 11.76 27.94 15.38 32.43 30.56 27.03 42.31 37.50 43.33 63.64 43.48 16.33 13.95 22.58 33.33 20.34 39.13 16.00 43.14 27.78 21.43 30.51 42.86 21.69 17.39 21.88 21.43 23.68 20.69 29.51 15.62 17.39 27.27 12.50 15.38 20.69 23.26 21.88 24.14 30.23 K alternative_donor Cep97 chr2L + chr2L_3870555_3870621 chr2L_3870559_3870621 chr2L_3870622_3871425;chr2L_3870127_3870554 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG14939,RI_chr2L_11812683_11813150 chr2L - chr2L_11812683_11813633;chr2L_11812683_11813150 chr2L_11812683_11813724 chr2L_11812583_11812682;chr2L_11813725_11813792 94.12 91.30 93.48 95.83 100.00 93.33 94.12 94.83 96.49 100.00 96.08 95.95 100.00 96.00 97.62 97.96 93.94 97.22 95.45 95.51 98.00 86.67 88.89 83.33 70.00 97.14 92.31 72.73 87.50 90.00 97.73 90.00 86.96 94.94 NA 80.00 93.33 87.50 88.89 93.33 87.50 96.15 97.22 91.67 96.67 87.50 81.82 90.91 97.22 81.82 83.33 94.44 NA NA 95.24 NA 100.00 94.74 K intron_retention lok,RI_chr2L_20063248_20063377 chr2L + chr2L_20061721_20061781 chr2L_20061720_20061721;chr2L_20061781_20061782 chr2L_20061530_20061720;chr2L_20061782_20062012 26.67 21.21 38.89 48.98 26.09 23.08 41.07 19.67 26.67 25.00 36.84 25.45 28.21 33.33 31.03 17.31 17.24 25.00 20.51 30.77 40.00 35.29 31.11 25.81 47.83 45.45 35.00 40.00 44.44 21.74 22.22 25.00 36.36 29.31 30.43 50.00 15.15 24.00 35.29 28.26 60.00 23.81 30.00 26.47 25.00 19.23 21.43 26.67 25.81 24.14 34.88 25.93 NA 40.00 18.00 20.00 40.00 21.05 K intron_retention Tob,RI_chrX_15977009_15983293 chrX - chrX_15974991_15975074 chrX_15974990_15974991;chrX_15975074_15975075 chrX_15974837_15974990;chrX_15975075_15975315 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 88.89 NA NA 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA NA 100.00 NA 100.00 NA 100.00 90.91 NA NA 100.00 NA NA NA K alternative_donor eIF2B-delta chr2R + chr2R_19274141_19274529 chr2R_19274146_19274529 chr2R_19274530_19274619;chr2R_19274016_19274140 94.44 92.31 100.00 95.45 NA 100.00 96.88 96.15 97.37 NA 90.00 97.44 100.00 93.33 92.86 100.00 100.00 91.67 88.89 92.31 88.89 90.48 86.36 93.75 100.00 92.31 94.44 88.24 92.86 66.67 100.00 63.64 NA 95.83 90.00 91.67 90.91 100.00 94.44 76.47 NA 96.15 100.00 100.00 NA 88.24 96.00 90.91 100.00 94.44 100.00 100.00 100.00 100.00 93.33 100.00 100.00 94.12 K alternative_donor CG10277,I_chr3R_2208983_2210253,I_chr3R_2211939_2212057 chr3R + chr3R_2209240_2210702;chr3R_2209244_2210702 chr3R_2208983_2210702 chr3R_2210703_2210980;chr3R_2208883_2208982 95.58 86.67 97.33 95.33 95.00 98.44 94.57 96.45 95.58 98.82 95.31 94.48 95.52 94.29 94.74 97.54 93.48 92.31 96.15 95.95 95.38 94.30 95.93 96.26 95.16 93.98 96.12 92.65 88.97 98.26 94.90 100.00 96.82 94.06 96.00 95.80 97.40 71.43 98.03 96.49 98.26 95.21 95.00 94.95 94.68 97.01 97.01 96.95 94.49 98.04 95.14 95.35 97.10 100.00 94.87 100.00 100.00 99.00 K intron_retention CG31278,noncoding_15893,RI_chr3R_6533509_6533568 chr3R - chr3R_6533509_6533579 chr3R_6533508_6533509;chr3R_6533579_6533580 chr3R_6533409_6533508;chr3R_6533580_6533668 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA 14.29 NA NA NA 4.17 NA 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 8.57 K alternative_acceptor PR2,I_chr2R_9032197_9036175 chr2R - chr2R_9032194_9036175 chr2R_9035960_9036175 chr2R_9036176_9036275;chr2R_9032097_9032193 19.23 16.00 18.18 45.00 17.14 15.56 35.29 22.22 18.75 24.14 15.38 21.43 17.50 15.56 20.00 33.33 21.62 15.15 20.00 34.95 16.22 15.56 27.12 29.55 30.00 19.23 28.26 44.12 22.22 22.50 17.95 16.67 35.48 21.74 16.67 28.26 23.08 32.00 18.18 18.18 26.32 17.58 22.22 15.56 26.19 16.98 13.95 17.33 19.05 27.50 17.54 26.92 14.00 14.29 17.39 20.69 17.39 14.49 K intron_retention I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10068715,I_chr2R_10067437_10068984,I_chr2R_10068194_10068715 chr2R + chr2R_10067437_10068715 chr2R_10067436_10067437;chr2R_10068715_10068716 chr2R_10067337_10067436;chr2R_10068716_10068805 16.18 12.79 15.87 18.57 16.07 18.18 38.10 19.28 10.62 5.97 28.57 24.71 27.27 27.27 16.67 18.18 10.91 20.59 19.15 14.02 16.67 6.36 12.81 12.25 25.00 15.56 21.43 18.42 35.14 10.71 20.69 25.00 14.56 15.79 14.08 17.86 10.81 8.13 14.69 18.31 45.95 14.05 20.51 18.45 10.29 23.33 14.56 16.18 14.00 22.22 16.18 16.46 9.30 16.67 15.69 15.74 13.51 13.58 K intron_retention jog,I_chrX_19730788_19739571 chrX - chrX_19730788_19744895 chrX_19730787_19730788;chrX_19744895_19744896 chrX_19730688_19730787;chrX_19744896_19745186 0.00 1.45 1.18 3.30 0.00 0.00 2.86 1.20 1.80 0.00 0.00 3.97 4.17 3.85 1.19 1.27 0.00 0.00 0.00 1.04 0.00 0.00 0.63 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.87 0.00 0.00 0.38 0.00 0.00 1.16 0.00 1.97 4.08 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Rpn5 chr3R + chr3R_1615433_1615491;chr3R_1615437_1615491 chr3R_1615416_1615491 chr3R_1615492_1616546;chr3R_1615400_1615415 0.00 1.14 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.69 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 1.64 0.00 0.92 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 3.70 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention E_chr4_592469_594231,Ephrin,I_chr4_595055_597604,RI_chr4_596272_596341 chr4 + chr4_592490_594238 chr4_592489_592490;chr4_594238_594239 chr4_592471_592489;chr4_594239_594331 48.81 NA NA 47.62 NA NA 53.33 52.38 50.00 NA NA 44.44 29.41 NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 58.82 NA NA NA NA NA NA NA 56.25 NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG15609,I_chr2R_12898038_12898391,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12898038_12898391 chr2R_12898041_12898391 chr2R_12898392_12898481;chr2R_12897938_12898037 99.21 100.00 100.00 100.00 100.00 98.68 98.67 96.97 97.73 98.11 97.73 99.21 98.28 98.04 100.00 100.00 98.39 98.31 100.00 99.25 100.00 100.00 98.70 98.78 100.00 98.04 98.72 96.55 100.00 100.00 97.40 100.00 100.00 99.13 97.06 100.00 97.37 100.00 99.03 98.90 95.35 99.23 97.96 100.00 97.73 97.10 100.00 100.00 98.89 100.00 100.00 100.00 100.00 94.74 100.00 100.00 96.67 100.00 K intron_retention CG1418 chr2R - chr2R_5851827_5851879 chr2R_5851826_5851827;chr2R_5851879_5851880 chr2R_5851342_5851826;chr2R_5851880_5852086 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 1.89 0.00 1.72 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 1.69 0.00 2.52 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 2.78 0.00 0.00 0.00 0.00 0.00 0.78 0.00 K alternative_last_exon Haspin chr2RHet + chr2RHet_3215563_3252681 chr2RHet_3215563_3234342 chr2RHet_3252682_3252944 chr2RHet_3234343_3234814 chr2RHet_3215287_3215562 100.00 100.00 100.00 100.00 NA 100.00 94.44 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG31431 chr3R + chr3R_17696702_17697703 chr3R_17696701_17696702;chr3R_17697703_17697704 chr3R_17696406_17696701;chr3R_17697704_17697862 94.12 93.75 95.00 96.77 100.00 94.44 93.55 97.30 93.75 NA 78.57 96.67 95.24 86.67 85.19 100.00 92.31 93.33 94.12 97.87 92.31 NA 95.83 100.00 93.75 95.83 87.10 100.00 88.89 100.00 93.75 87.50 93.75 88.00 100.00 100.00 92.86 NA 100.00 90.48 94.12 93.62 94.12 100.00 NA 86.96 94.44 90.91 97.22 88.24 96.88 100.00 90.91 100.00 100.00 NA 93.75 91.67 K alternative_donor loco,I_chr3R_18448629_18449211,I_chr3R_18456329_18462522 chr3R - chr3R_18456329_18462522 chr3R_18456329_18461366 chr3R_18456229_18456328;chr3R_18462523_18462622 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 80.00 100.00 100.00 100.00 100.00 75.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 K jcn_only_AA CG31678,I_chr2L_20661149_20674994,I_chr2L_20664450_20667865,RI_chr2L_20671102_20674994 chr2L - chr2L_20661149_20674994 chr2L_20664210_20674994 chr2L_20674995_20675094 100.00 100.00 100.00 100.00 100.00 100.00 98.82 100.00 99.30 97.06 95.74 100.00 100.00 100.00 98.75 100.00 100.00 100.00 100.00 100.00 96.43 98.63 100.00 98.61 96.08 100.00 98.59 98.44 97.37 98.97 98.72 100.00 98.12 99.15 100.00 98.73 95.00 100.00 100.00 97.12 98.85 100.00 100.00 98.78 100.00 100.00 100.00 96.85 100.00 100.00 98.95 100.00 100.00 100.00 98.81 100.00 100.00 99.21 K intron_retention mRpS9 chr3R - chr3R_3715161_3715230 chr3R_3715160_3715161;chr3R_3715230_3715231 chr3R_3714983_3715160;chr3R_3715231_3715393 4.94 2.04 4.11 8.05 5.71 2.47 2.99 6.67 6.90 8.00 8.89 4.76 5.13 3.85 5.13 5.56 5.71 5.00 4.00 4.19 1.56 8.33 5.88 2.54 5.48 2.44 4.94 5.26 0.88 5.75 7.23 5.88 7.41 6.25 5.63 6.67 7.06 6.25 4.51 4.27 2.44 5.69 0.00 4.88 2.34 3.37 3.52 1.64 3.45 7.87 3.42 4.44 2.36 4.03 6.41 5.17 4.02 1.64 K intron_retention CG31150,Hmt-1 chr3R - chr3R_11671610_11674153 chr3R_11671609_11671610;chr3R_11674153_11674154 chr3R_11671466_11671609;chr3R_11674154_11674158 0.35 1.13 1.02 1.19 0.00 1.10 1.68 0.00 0.41 0.00 0.00 0.82 0.00 0.00 0.44 1.17 0.00 0.00 0.85 0.94 0.00 0.00 0.61 0.34 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.39 0.62 0.64 0.00 0.33 0.95 0.00 0.49 0.69 0.97 0.00 0.00 0.75 0.70 0.00 2.41 1.13 0.64 0.00 0.00 0.35 0.00 0.41 0.96 0.00 0.34 K jcn_only_AD CG14767,RI_chr2R_4607538_4607606,CG30357,RI_chr2R_4610372_4610761 chr2R - chr2R_4607538_4610761 chr2R_4607538_4607606 chr2R_4607438_4607537;chr2R_4610762_4610861 0.40 0.16 0.69 0.15 0.00 0.23 1.98 0.17 1.02 2.49 1.64 0.23 0.84 0.85 0.40 0.18 0.95 0.56 0.28 0.62 0.00 0.64 0.10 0.25 1.02 1.08 0.70 0.29 0.00 0.91 0.64 0.72 0.00 0.83 0.48 0.18 0.30 0.30 0.21 0.24 0.83 0.60 1.06 0.27 1.55 0.38 0.31 0.77 0.27 0.56 0.91 0.43 0.18 0.19 0.22 0.64 0.14 0.00 K alternative_donor CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907784_9908424;chr2L_9907784_9908307;chr2L_9907784_9908405 chr2L_9907784_9908531 chr2L_9907756_9907783;chr2L_9908532_9908619 11.84 9.43 9.09 9.38 19.23 12.50 12.86 7.89 18.40 13.64 16.00 10.75 17.95 18.18 9.09 6.17 11.36 12.00 7.14 12.86 13.33 20.47 11.11 13.85 7.41 9.09 18.06 11.11 12.50 10.71 16.67 2.94 8.70 9.78 15.15 13.59 19.72 16.28 11.48 12.37 9.09 9.89 7.32 17.95 13.16 11.84 17.91 9.52 8.43 15.91 9.88 10.26 15.38 10.87 12.90 12.00 10.34 9.09 K jcn_only_AD CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20824725_20825271;chr2L_20824494_20825271;chr2L_20824631_20825271 chr2L_20824602_20825271 chr2L_20825272_20825366;chr2L_20824482_20824493 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA 0.00 0.00 2.27 NA NA NA NA NA NA 2.74 NA 0.00 NA NA 2.63 2.70 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention RpL29,I_chr2R_17184688_17191389 chr2R + chr2R_17181380_17181555 chr2R_17181379_17181380;chr2R_17181555_17181556 chr2R_17181355_17181379;chr2R_17181556_17181666 35.83 NA NA 33.33 NA NA 19.05 6.67 19.35 NA 13.33 29.41 NA NA NA 37.50 25.00 NA 41.67 26.92 NA NA 50.00 NA NA NA 54.55 NA NA NA 35.29 NA NA 43.75 NA NA 19.23 NA NA 50.00 NA 40.00 NA NA NA 60.00 NA NA 53.33 NA NA NA NA NA 36.36 NA 25.00 75.86 K intron_retention babo chr2R + chr2R_4846840_4846904 chr2R_4846839_4846840;chr2R_4846904_4846905 chr2R_4846612_4846839;chr2R_4846905_4847138 0.00 0.00 2.33 0.00 0.00 0.00 5.77 2.27 2.90 0.00 0.00 2.70 4.35 0.00 5.56 0.00 0.00 0.00 4.17 2.92 0.00 0.00 0.00 4.55 6.25 4.35 12.96 NA 8.70 0.00 3.70 0.00 0.00 2.13 0.00 0.00 3.57 0.00 3.12 3.23 7.69 1.82 0.00 2.04 0.00 0.00 0.00 9.09 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6501632_6502037 chr2R_6501631_6501632;chr2R_6502037_6502038 chr2R_6501448_6501631;chr2R_6502038_6503753 1.59 1.67 2.82 2.35 0.00 3.33 0.00 2.41 0.00 0.00 0.00 2.53 3.12 1.39 1.09 1.59 1.64 1.39 0.00 2.73 0.00 1.12 2.82 1.57 2.35 5.41 2.17 4.17 1.04 0.00 1.69 3.92 2.56 3.42 0.00 1.67 0.76 1.33 0.00 1.62 4.44 1.10 0.00 0.00 0.00 2.70 1.22 1.80 3.17 0.00 2.10 2.41 1.79 0.00 0.00 1.23 0.00 2.60 N jcn_only_AA C3G chrX - chrX_6676710_6676802 chrX_6676726_6676802 chrX_6676803_6676928;chrX_6676644_6676709 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG1553 chr2R - chr2R_3692444_3692926 chr2R_3692444_3692605 chr2R_3691017_3692443;chr2R_3692927_3693071 17.43 NA NA 13.33 NA NA 25.00 10.00 25.00 NA NA 16.67 NA NA NA 23.08 NA NA 15.38 16.67 NA NA NA NA NA NA 37.50 66.67 18.18 NA NA NA NA 10.53 NA NA NA NA NA 20.00 NA 20.00 NA NA NA NA NA 0.00 10.53 NA NA NA NA NA NA NA NA NA K alternative_donor CG14442,I_chrX_6586147_6586435 chrX - chrX_6586898_6587143 chrX_6586898_6587125 chrX_6586436_6586897;chrX_6587144_6589034 67.86 57.14 83.33 92.59 57.14 75.00 80.00 66.67 70.27 65.00 72.00 70.97 91.67 86.36 67.86 82.61 66.67 60.00 78.57 74.47 76.47 60.00 68.42 58.82 88.89 88.00 66.67 60.00 70.97 50.00 93.10 60.00 57.75 78.12 58.82 81.82 66.67 54.17 64.00 59.26 75.86 60.00 70.59 75.00 41.30 69.05 56.25 52.50 72.34 62.50 46.67 75.00 53.33 60.00 74.19 53.33 69.23 64.71 K alternative_acceptor RI_chr2L_8218680_8218853,Pvr,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8221968_8222225 chr2L_8222115_8222225 chr2L_8222226_8222376;chr2L_8221488_8221967 89.17 86.06 89.17 91.33 92.59 94.26 94.44 96.82 91.30 83.76 91.04 91.87 94.21 93.08 92.26 91.41 90.91 93.02 94.57 87.47 90.44 86.60 75.74 84.31 84.29 92.50 81.86 82.09 89.53 85.47 87.77 89.57 89.47 96.55 91.85 93.48 81.67 85.33 88.16 90.04 88.14 91.88 92.17 86.03 85.87 87.70 86.08 90.65 88.85 81.68 87.28 88.68 85.63 84.44 93.96 82.35 83.67 87.72 K intron_retention scrib,I_chr3R_22362324_22363015,I_chr3R_22381374_22399575,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22362324_22363092 chr3R_22362323_22362324;chr3R_22363092_22363093 chr3R_22362316_22362323;chr3R_22363093_22363115 6.00 0.00 NA 20.00 NA NA NA 12.50 7.14 0.00 NA 10.53 12.50 NA NA 12.50 NA NA 0.00 0.00 NA 41.18 6.45 8.70 0.00 NA 9.52 8.00 13.79 3.85 NA NA 0.00 10.53 0.00 0.00 0.00 0.00 0.00 8.51 7.14 8.00 NA 11.54 NA 0.00 NA 4.17 9.09 NA 0.00 0.00 NA NA 5.56 NA NA 0.00 K alternative_acceptor Gprk1,R_chr2R_238724_265876,RI_chr2R_357455_358274 chr2R - chr2R_210444_223881 chr2R_210463_223881 chr2R_223882_223902;chr2R_210281_210443 0.00 NA NA NA NA NA 0.00 4.35 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 0.00 NA NA 0.00 NA 3.03 NA 0.00 NA NA NA NA 0.00 NA 0.00 K alternative_last_exon br,I_chrX_1517022_1518170,chrX_1531825_1532171.0,chrX_1532359_1533289.0,chrX_1533577_1534629.0,chrX_1535554_1536485.0 chrX + chrX_1531368_1548424;chrX_1531368_1552820;chrX_1531368_1541397 chrX_1531368_1537100,chrX_1531368_1536917 chrX_1548425_1550023;chrX_1552821_1559444;chrX_1541398_1544171 chrX_1537101_1539195 chrX_1531317_1531367 23.00 21.82 17.02 33.00 19.05 17.07 22.22 17.07 16.42 33.33 15.22 19.44 21.62 18.00 17.31 14.93 28.12 13.89 17.78 27.93 16.28 32.81 24.53 25.64 26.83 17.95 21.31 36.17 32.08 18.81 19.23 32.43 25.56 16.13 23.44 30.19 23.00 16.07 23.46 29.13 39.02 17.14 20.45 23.08 32.61 31.82 25.53 30.70 14.55 35.21 23.38 21.43 20.31 28.57 17.74 27.27 25.00 23.62 K alternative_donor nmo,I_chr3L_8010749_8032974 chr3L + chr3L_7972274_7973499 chr3L_7972781_7973499 chr3L_7973500_7974082;chr3L_7972181_7972273 89.44 87.50 100.00 90.00 80.00 83.33 100.00 90.91 92.86 87.50 100.00 100.00 85.71 88.89 87.50 90.00 87.50 100.00 100.00 100.00 100.00 55.56 88.89 100.00 75.00 62.50 85.71 83.33 85.71 71.43 87.50 NA 87.50 91.67 60.00 100.00 85.71 100.00 80.00 90.91 75.00 84.62 100.00 87.50 100.00 88.89 100.00 91.67 92.31 100.00 100.00 83.33 100.00 NA 88.89 100.00 NA 100.00 K intron_retention RI_chr2R_9104206_9104265,Fsn,E_chr2R_9109153_9109638,CG4663 chr2R - chr2R_9109310_9109366 chr2R_9109309_9109310;chr2R_9109366_9109367 chr2R_9108945_9109309;chr2R_9109367_9109734 0.00 0.00 0.00 0.00 0.00 0.00 5.00 1.92 1.47 0.00 2.86 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 4.12 0.00 0.00 0.00 0.00 5.00 5.71 1.89 0.00 7.27 0.00 0.00 0.00 0.00 5.45 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 5.06 0.00 0.00 6.45 0.00 5.77 4.08 0.00 0.00 0.00 0.00 4.65 0.00 1.82 K alternative_donor ps,I_chr3R_5243723_5265067,I_chr3R_5243723_5270765,noncoding_15575,I_chr3R_5245770_5265067,I_chr3R_5245770_5269732,I_chr3R_5269733_5270765 chr3R + chr3R_5243723_5257750 chr3R_5245770_5257750 chr3R_5257751_5258205;chr3R_5243705_5243722 60.00 70.00 68.75 55.56 50.00 56.25 64.52 50.00 54.39 31.25 88.89 60.00 42.86 56.52 63.16 71.43 61.11 52.63 57.14 44.26 50.00 60.00 72.22 46.15 69.23 55.00 83.33 87.50 77.78 63.16 58.82 66.67 48.00 53.49 81.82 83.33 56.25 50.00 60.00 83.33 75.00 53.12 55.00 58.82 33.33 75.00 50.00 76.92 52.50 80.00 76.92 58.33 60.00 33.33 52.17 66.67 100.00 80.00 K alternative_acceptor RpL12,I_chr2R_19948517_19948655,RI_chr2R_19948517_19948677,I_chr2R_19948517_19948682 chr2R + chr2R_19948517_19948672;chr2R_19948517_19948682;chr2R_19948517_19948655 chr2R_19948517_19948677 chr2R_19948417_19948516;chr2R_19948683_19948755 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.05 0.00 0.04 0.05 K intron_retention n-syb,I_chr3L_1637270_1637558,metl chr3L - chr3L_1638855_1639041 chr3L_1638854_1638855;chr3L_1639041_1639042 chr3L_1637903_1638854;chr3L_1639042_1639220 26.00 15.00 22.22 36.00 40.91 31.91 30.61 25.86 30.99 8.70 29.41 29.76 30.00 25.58 26.00 20.83 25.00 44.83 24.44 27.62 19.44 20.51 15.91 24.56 16.67 26.83 40.00 35.14 41.38 25.00 50.72 26.67 22.54 17.33 27.59 28.00 32.43 20.00 21.13 33.33 18.75 26.19 25.71 42.00 32.79 20.43 19.40 38.24 28.89 19.30 23.91 26.32 20.24 14.77 30.36 28.57 20.24 18.99 K intron_retention ND42,RI_chr3R_17861471_17861539 chr3R + chr3R_17853503_17853741 chr3R_17853502_17853503;chr3R_17853741_17853742 chr3R_17853498_17853502;chr3R_17853742_17854870 0.00 0.00 0.00 0.00 0.00 1.82 1.27 2.06 1.60 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 5.71 K jcn_only_AD CG18011 chr2R + chr2R_6030854_6030913 chr2R_6030858_6030913 chr2R_6030914_6031175;chr2R_6030698_6030853 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG10069,I_chr2R_17169897_17170495,I_chr2R_17170432_17170491,I_chr2R_17171765_17171886 chr2R + chr2R_17171617_17171886 chr2R_17171617_17171728;chr2R_17171765_17171886 chr2R_17171729_17171764 chr2R_17171048_17171616;chr2R_17171887_17171986 17.14 24.00 19.18 11.11 13.11 16.92 11.43 26.60 16.10 5.88 8.47 9.84 18.52 10.00 15.85 18.52 16.36 18.84 18.31 19.84 11.76 31.08 17.14 18.67 16.28 11.76 25.86 9.80 26.58 12.68 19.75 18.52 22.08 12.24 14.58 25.00 12.07 19.15 18.06 10.77 16.88 19.61 16.95 11.27 23.47 29.47 26.67 23.53 13.33 12.28 20.31 19.51 13.33 32.35 12.24 19.61 18.18 11.21 K intron_retention CG3760,CG3770,CG12851 chr2R + chr2R_20826366_20826496 chr2R_20826365_20826366;chr2R_20826496_20826497 chr2R_20826283_20826365;chr2R_20826497_20826740 5.63 4.46 4.96 6.41 3.70 4.46 10.61 3.12 5.49 5.88 5.95 8.59 3.45 4.12 4.51 3.90 5.56 3.85 6.17 4.00 5.63 6.25 11.57 8.91 14.89 7.79 4.46 11.59 7.78 5.31 4.88 5.30 2.94 4.35 5.68 23.26 4.97 10.28 6.11 5.98 8.47 4.86 6.49 3.91 4.97 5.83 8.57 5.31 5.26 7.14 10.20 10.29 6.67 9.43 4.17 6.82 4.38 3.45 K alternative_acceptor CG17352,I_chr3L_8351006_8351949,I_chr3L_8351036_8351655 chr3L - chr3L_8346513_8346578 chr3L_8346527_8346578 chr3L_8346579_8347283;chr3L_8345596_8346512 77.27 NA NA 77.78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 77.27 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 87.50 66.67 NA NA NA NA NA 60.00 NA NA NA NA 55.56 NA NA NA NA NA NA NA K intron_retention Iap2,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11821325_11821603 chr2R_11821324_11821325;chr2R_11821603_11821604 chr2R_11821304_11821324;chr2R_11821604_11821670 19.05 NA NA 6.67 NA NA 26.67 20.00 36.36 NA NA 28.57 NA NA 20.00 20.00 NA NA NA 10.71 NA NA 19.05 25.00 NA NA 16.67 11.76 NA NA 0.00 NA 29.41 23.08 NA 6.67 NA NA 12.50 8.70 NA 18.52 NA NA NA 35.29 NA NA 11.76 NA 33.33 NA NA 15.38 NA NA NA NA K jcn_only_AD eIF5,noncoding_24049,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15885416_15885611;chrX_15885416_15885925;chrX_15885416_15885783 chrX_15885416_15885854 chrX_15885316_15885415;chrX_15885926_15885954 86.25 NA 81.48 77.27 NA NA 88.24 82.35 75.00 NA NA 83.33 NA 100.00 NA 91.67 NA NA NA 92.59 NA NA NA NA NA NA NA NA NA NA 84.21 NA NA 87.50 95.00 NA NA NA NA NA NA 85.00 NA NA NA 90.91 NA NA 81.48 NA NA NA NA NA NA NA NA 88.00 K cassette sda,I_chr3R_22742285_22742350,RI_chr3R_22750984_22752737 chr3R + chr3R_22741631_22750355 chr3R_22741631_22742224;chr3R_22742285_22750355 chr3R_22742225_22742284 chr3R_22741498_22741630;chr3R_22750356_22750983 93.33 90.91 93.75 91.67 100.00 93.33 91.67 93.75 96.43 94.44 NA 88.89 62.50 86.67 92.31 93.75 88.89 90.00 93.75 95.00 100.00 100.00 97.22 100.00 100.00 90.00 89.47 85.00 88.89 95.83 94.12 100.00 86.96 87.50 95.24 93.75 90.48 94.44 100.00 85.19 93.33 91.30 100.00 93.55 100.00 94.74 88.24 86.36 86.96 78.57 87.50 83.33 87.50 NA 100.00 86.67 100.00 77.78 K multi_cassette sol chrX + chrX_21221878_21225120 chrX_21221878_21222886;chrX_21223513_21223779;chrX_21224091_21225120 chrX_21222887_21223512;chrX_21223780_21224090 chrX_21221327_21221877;chrX_21225121_21225440 96.92 95.77 97.92 98.11 94.59 97.50 97.78 94.44 98.17 97.83 93.10 98.85 96.77 96.88 91.84 100.00 96.77 94.87 97.06 96.46 96.55 81.31 97.52 98.10 97.01 90.00 100.00 100.00 96.05 93.94 100.00 85.37 89.19 97.22 94.12 86.05 97.32 98.86 96.30 96.40 96.08 97.46 96.43 96.92 98.46 96.77 98.31 93.81 96.97 97.73 96.88 98.11 97.83 97.78 97.96 96.08 100.00 92.16 K intron_retention Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16108931_16109131 chr3L_16108930_16108931;chr3L_16109131_16109132 chr3L_16108769_16108930;chr3L_16109132_16109341 0.00 0.00 0.00 1.25 0.00 0.00 7.25 0.00 1.27 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 2.38 3.70 2.35 0.00 2.33 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 1.18 0.00 0.00 0.00 1.06 0.00 0.00 0.00 K jcn_only_AA Pi4KIIalpha chr3R - chr3R_1389068_1389263 chr3R_1389095_1389263 chr3R_1389264_1389309;chr3R_1388687_1389067 34.34 28.95 28.00 36.11 48.00 30.43 45.83 43.24 36.05 60.00 26.47 27.27 37.50 24.00 16.22 36.84 34.38 33.33 23.33 32.73 16.13 35.21 42.86 40.00 25.00 45.00 20.59 37.04 39.47 51.52 35.29 NA NA 26.42 38.71 66.67 47.14 35.00 28.57 35.19 NA 30.51 NA 48.48 NA 30.77 19.57 NA 31.71 43.55 36.67 31.71 16.67 28.12 19.35 34.29 17.54 NA N jcn_only_AA I_chrX_16309561_16309689,hang,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16323441_16323548;chrX_16323441_16324653 chrX_16323441_16323563 chrX_16323093_16323440;chrX_16324654_16324797 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Bruce chr3R - chr3R_6151379_6151982 chr3R_6151379_6151453;chr3R_6151754_6151982 chr3R_6151454_6151753 chr3R_6150964_6151378;chr3R_6151983_6152204 3.11 0.00 4.41 0.88 4.44 4.17 2.04 1.72 2.70 6.25 7.27 3.10 0.00 3.17 2.63 4.82 3.51 4.17 3.28 0.92 3.77 2.44 1.37 8.00 3.23 0.00 3.77 8.33 3.92 3.39 3.28 NA 2.78 1.75 6.06 0.00 3.12 0.00 3.39 3.57 0.00 1.69 1.82 1.92 NA NA 0.00 2.53 3.30 NA 2.70 3.85 0.00 NA 2.90 NA NA 5.56 K alternative_donor CG3631 chr3R + chr3R_10705801_10705885;chr3R_10705766_10705885 chr3R_10705805_10705885 chr3R_10705886_10706516;chr3R_10705554_10705765 0.00 NA NA NA NA NA 7.69 NA 7.69 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 20.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K alternative_donor Dyrk3,I_chr4_1233845_1234170 chr4 - chr4_1234147_1234374 chr4_1234147_1234223 chr4_1234032_1234146;chr4_1234375_1234398 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 83.33 100.00 NA 95.65 NA NA NA 100.00 NA NA 87.50 NA NA NA 100.00 100.00 NA NA NA NA NA 90.00 100.00 100.00 NA NA NA 83.33 NA 100.00 NA 100.00 NA NA NA NA 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA K cassette smi35A,I_chr2L_14197587_14197656,E_chr2L_14222082_14233893,RI_chr2L_14233579_14233647 chr2L - chr2L_14197868_14222016 chr2L_14197868_14217026;chr2L_14217070_14222016 chr2L_14217027_14217069 chr2L_14197657_14197867;chr2L_14222017_14222059 96.30 100.00 100.00 82.61 100.00 87.50 55.00 95.65 96.15 NA NA 91.67 100.00 100.00 100.00 77.78 100.00 87.50 91.67 94.12 NA 90.00 100.00 87.50 NA 88.89 NA NA NA NA 100.00 NA NA 100.00 NA 100.00 NA NA 100.00 91.67 NA 100.00 100.00 NA NA NA NA NA 96.30 90.91 100.00 87.50 NA NA 100.00 NA NA NA N jcn_only_AD tai,I_chr2L_9191814_9206231 chr2L + chr2L_9241270_9241375 chr2L_9241282_9241375 chr2L_9241376_9241549;chr2L_9239822_9241269 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 5.45 0.00 0.00 0.00 4.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.20 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette app,RI_chr3L_12201038_12201989,I_chr3L_12259361_12259754 chr3L - chr3L_12214383_12257720 chr3L_12214383_12233752;chr3L_12233775_12257720 chr3L_12233753_12233774 chr3L_12213078_12214382;chr3L_12257721_12257909 20.00 NA NA 9.09 NA 36.36 10.00 NA 26.67 NA NA 29.41 NA NA 15.79 16.67 NA NA 33.33 25.00 NA NA 26.32 NA NA NA NA NA NA NA NA NA NA 21.05 NA NA NA NA NA 31.25 NA 26.67 NA 20.00 NA NA NA 17.65 14.29 NA 7.69 NA NA NA 17.65 NA NA 17.65 K intron_retention Pink1,F_chrX_6578108_6578160,F_chrX_6578108_6578165,I_chrX_6578115_6578251 chrX + chrX_6581063_6581125 chrX_6581062_6581063;chrX_6581125_6581126 chrX_6580996_6581062;chrX_6581126_6581253 93.09 88.89 90.00 100.00 NA NA 94.12 92.86 87.50 90.00 90.91 93.33 84.62 100.00 91.67 89.47 90.91 90.00 87.50 75.00 100.00 NA 90.00 100.00 NA 100.00 87.50 90.00 100.00 NA 93.33 NA NA 93.33 88.89 NA 100.00 NA 100.00 90.48 100.00 82.35 NA 91.67 93.75 94.44 NA 100.00 93.75 100.00 100.00 91.67 NA NA 100.00 90.91 93.33 95.24 K intron_retention Aldh chr2L + chr2L_9389978_9390039 chr2L_9389977_9389978;chr2L_9390039_9390040 chr2L_9389829_9389977;chr2L_9390040_9390136 0.00 0.34 0.39 0.26 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 1.03 0.58 0.00 0.00 0.00 1.68 5.93 0.75 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.71 0.00 0.20 0.00 0.54 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 K intron_retention CG3016 chrX - chrX_5773356_5773409 chrX_5773355_5773356;chrX_5773409_5773410 chrX_5772079_5773355;chrX_5773410_5773866 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 K intron_retention CG31716,I_chr2L_10397648_10398034 chr2L + chr2L_10398220_10398278 chr2L_10398219_10398220;chr2L_10398278_10398279 chr2L_10398035_10398219;chr2L_10398279_10398392 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD betaggt-II,RI_chr2L_2879966_2880043 chr2L + chr2L_2879880_2880043 chr2L_2879966_2880043 chr2L_2880044_2880143;chr2L_2879866_2879879 0.00 0.00 0.00 3.39 0.00 0.00 1.89 0.00 0.99 0.00 0.00 0.00 3.12 2.33 1.67 0.00 0.00 0.00 0.00 1.64 0.00 6.17 0.00 0.00 0.00 0.00 0.00 0.00 4.76 1.28 7.50 0.00 1.46 0.00 0.00 0.00 0.00 2.41 0.00 1.05 0.00 1.01 1.89 2.44 0.00 4.55 0.00 0.00 1.11 2.56 0.00 0.00 0.00 0.00 1.92 0.00 0.71 0.00 K alternative_donor CG7224 chr2L + chr2L_7999168_7999248;chr2L_7999170_7999248;chr2L_7999174_7999248 chr2L_7999176_7999248 chr2L_7999249_7999714;chr2L_7998934_7999167 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention spin,I_chr2R_12013288_12013847 chr2R + chr2R_12020141_12020926 chr2R_12020140_12020141;chr2R_12020926_12020927 chr2R_12020064_12020140;chr2R_12020927_12020988 4.67 3.83 3.80 15.25 4.49 4.44 4.66 8.57 4.17 1.29 5.26 5.69 5.06 6.02 4.23 7.59 4.79 3.42 5.56 3.76 5.00 9.43 3.83 4.51 6.43 5.19 4.65 18.07 4.40 5.24 6.54 7.41 6.90 5.24 3.80 5.92 5.25 3.77 2.48 4.67 5.36 3.77 8.82 7.10 3.30 3.12 1.73 9.77 4.26 6.11 3.91 5.30 2.90 2.82 5.31 2.55 3.41 1.85 K alternative_donor pr-set7 chr3R + chr3R_10142132_10142198;chr3R_10142103_10142198 chr3R_10142094_10142198 chr3R_10142199_10142589;chr3R_10142068_10142093 8.34 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 0.00 NA NA NA NA NA NA NA NA NA K alternative_last_exon endos,I_chr3L_14024099_14024488,I_chr3L_14024103_14024546,noncoding_12505,I_chr3L_14024496_14024546 chr3L - chr3L_14024099_14024488;chr3L_14024103_14024488,chr3L_14024158_14024488 chr3L_14024331_14024488 chr3L_14023907_14024102 chr3L_14024237_14024330 chr3L_14024489_14024495 0.00 0.00 0.00 0.50 0.00 1.33 1.53 0.00 0.40 0.00 0.00 0.81 0.00 0.00 0.00 0.67 0.00 0.00 0.67 0.37 0.00 0.00 0.67 0.00 0.00 0.58 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.65 0.33 0.00 0.72 1.53 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.66 0.00 K intron_retention CG42271,RI_chrX_14127297_14127804 chrX - chrX_14127593_14127804 chrX_14127592_14127593;chrX_14127804_14127805 chrX_14127454_14127592;chrX_14127805_14127904 8.57 0.00 NA 25.71 NA 7.14 22.22 17.65 16.67 0.00 0.00 14.81 NA 15.38 4.00 0.00 NA NA NA 20.69 NA 9.68 15.00 4.35 NA 15.00 22.22 22.73 17.39 3.57 0.00 3.85 15.00 0.00 5.00 42.86 17.65 9.09 16.67 6.35 8.57 11.76 14.29 10.81 5.26 0.00 NA 8.00 6.25 7.14 11.76 0.00 NA NA 0.00 NA 0.00 4.35 K intron_retention Nup358,I_chr3R_21078958_21079044 chr3R + chr3R_21075425_21075944 chr3R_21075424_21075425;chr3R_21075944_21075945 chr3R_21075151_21075424;chr3R_21075945_21078957 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 1.34 0.00 0.00 0.00 0.00 2.38 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.85 0.00 0.00 0.00 K jcn_only_AA EDTP chr2R - chr2R_13320840_13320924;chr2R_13320873_13320924 chr2R_13320861_13320924 chr2R_13320925_13321563;chr2R_13320696_13320839 0.00 0.00 0.00 0.00 4.35 NA 0.00 2.38 5.88 NA NA 3.70 0.00 NA 8.70 0.00 NA 3.23 0.00 0.00 NA 5.88 2.38 0.00 NA NA 0.00 0.00 5.00 0.00 0.00 NA 4.00 0.00 NA 4.17 2.94 0.00 0.00 0.00 7.69 3.23 0.00 8.70 0.00 0.00 5.00 0.00 0.00 4.08 0.00 7.69 NA NA 4.17 2.94 0.00 0.00 K cassette Asx chr2R + chr2R_10394855_10395044 chr2R_10394855_10394920;chr2R_10394987_10395044 chr2R_10394921_10394986 chr2R_10394762_10394854;chr2R_10395045_10395817 35.50 40.00 33.33 59.38 17.65 16.67 39.13 42.86 31.25 35.00 20.00 28.21 41.67 44.44 40.74 25.00 30.00 29.41 30.43 36.00 NA 59.09 20.00 23.53 25.00 18.18 33.33 45.45 20.00 40.00 40.00 41.67 42.86 27.03 29.41 40.00 31.03 45.45 33.33 38.89 38.46 30.23 36.36 40.00 NA 40.00 36.36 59.09 39.39 30.00 38.10 31.25 NA NA 43.33 18.18 NA 33.33 K jcn_only_AA CG3635 chr2L + chr2L_22183467_22183599;chr2L_22183467_22183527 chr2L_22183467_22183607 chr2L_22183394_22183466;chr2L_22183608_22183915 51.92 60.24 62.72 63.19 60.87 60.75 43.12 58.93 56.48 51.85 57.14 50.00 50.67 46.72 62.29 55.83 55.38 58.27 55.03 51.69 52.82 55.30 64.29 50.94 38.40 52.83 68.02 63.64 34.62 53.01 46.54 39.39 56.61 50.44 51.92 30.16 45.03 53.38 53.73 41.59 36.62 55.17 62.11 39.48 46.91 38.65 44.23 33.68 48.66 59.22 46.01 38.10 48.84 45.86 51.95 48.90 60.36 40.83 K intron_retention CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1526399_1526659 chr3L_1526398_1526399;chr3L_1526659_1526660 chr3L_1526334_1526398;chr3L_1526660_1526731 90.00 NA 80.00 100.00 NA 90.91 100.00 94.12 95.65 NA 78.57 31.25 100.00 100.00 90.91 92.86 88.89 NA 100.00 76.47 60.00 NA 91.67 90.00 NA NA 88.89 NA NA NA 77.78 NA NA 93.75 NA NA 66.67 NA NA 88.00 75.00 90.48 NA 90.91 NA 90.00 NA 92.31 80.00 77.78 90.00 NA 63.64 NA 80.00 84.62 70.00 100.00 K intron_retention CG14741 chr3R - chr3R_7897042_7897103 chr3R_7897041_7897042;chr3R_7897103_7897104 chr3R_7896890_7897041;chr3R_7897104_7897250 0.88 1.28 1.51 5.64 0.56 0.39 3.19 0.60 1.05 0.00 0.96 0.77 0.97 0.00 1.60 1.06 0.47 0.38 1.06 0.67 3.07 0.00 0.72 0.68 4.53 3.01 3.10 7.14 4.01 0.88 0.88 2.76 1.96 0.00 1.65 11.33 0.52 1.56 0.70 0.90 8.96 0.59 0.00 0.84 0.00 2.39 0.00 0.86 0.86 1.13 0.50 0.00 0.88 0.00 0.67 0.52 0.88 1.49 K intron_retention RpL15 chr3LHet + chr3LHet_2397859_2398127 chr3LHet_2397858_2397859;chr3LHet_2398127_2398128 chr3LHet_2397802_2397858;chr3LHet_2398128_2398454 98.69 99.13 96.27 99.25 99.32 99.18 98.53 98.08 98.27 98.84 99.41 98.19 97.33 98.00 95.98 98.69 99.43 98.21 97.40 98.82 98.24 99.51 100.00 98.95 99.12 97.33 100.00 97.22 98.99 98.91 99.83 96.91 99.38 99.30 100.00 98.41 99.17 98.31 99.09 98.57 98.88 97.33 98.67 100.00 97.37 95.61 99.06 98.26 97.29 99.17 98.65 96.77 96.97 100.00 96.47 99.17 98.88 96.10 K jcn_only_AA CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15766003_15766068;chrX_15766003_15766047 chrX_15766003_15766062 chrX_15765903_15766002;chrX_15766069_15766147 91.89 93.75 92.59 90.91 91.30 NA 91.23 84.62 97.18 NA 87.50 89.09 96.77 92.00 93.94 95.35 87.50 NA 87.50 97.87 NA NA 100.00 NA NA 85.71 NA NA NA NA 91.89 NA NA 87.04 NA NA NA NA NA 88.24 NA 96.77 96.97 92.59 NA NA NA NA 90.00 NA 87.10 NA NA NA 95.92 NA NA NA K jcn_only_AD CG30015,I_chr2R_6743814_6744285,HL05382 chr2R - chr2R_6750461_6762075 chr2R_6750461_6761358 chr2R_6750328_6750460;chr2R_6762076_6762097 55.98 80.00 44.44 58.73 66.67 56.52 64.71 46.58 62.07 46.43 74.07 87.72 37.93 53.33 58.70 52.24 60.00 42.31 66.67 66.67 79.41 59.46 65.22 54.84 50.00 72.41 81.58 NA NA 40.43 56.41 NA 23.53 46.75 38.78 61.29 59.38 NA 55.56 75.38 41.94 51.92 66.67 80.43 48.28 19.15 30.77 36.67 66.13 NA 50.00 NA NA 50.00 54.39 NA NA 43.33 K intron_retention CG15237 chr2R - chr2R_2696862_2696928 chr2R_2696861_2696862;chr2R_2696928_2696929 chr2R_2696480_2696861;chr2R_2696929_2697016 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 14.71 0.00 1.06 0.00 0.00 2.56 6.35 32.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 2.73 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor arr,I_chr2R_9343426_9343486,I_chr2R_9347031_9370659 chr2R - chr2R_9369590_9370659 chr2R_9369590_9370634 chr2R_9369281_9369589;chr2R_9370660_9370692 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG2258,I_chrX_7993650_7995126,I_chrX_7994188_7995101 chrX - chrX_7991107_7991194 chrX_7991106_7991107;chrX_7991194_7991195 chrX_7990988_7991106;chrX_7991195_7991399 0.00 NA NA NA NA NA NA 5.88 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention Rnp4F,I_chrX_5214525_5214591 chrX - chrX_5215771_5215851 chrX_5215770_5215771;chrX_5215851_5215852 chrX_5215595_5215770;chrX_5215852_5216360 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.00 0.00 NA 0.00 0.00 1.69 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention scramb2 chr3L - chr3L_3045132_3045722 chr3L_3045131_3045132;chr3L_3045722_3045723 chr3L_3044973_3045131;chr3L_3045723_3046216 0.53 0.00 1.44 1.00 0.00 0.00 3.03 1.14 0.00 0.00 1.15 1.27 0.00 0.00 1.35 1.46 0.00 0.00 0.00 0.00 2.15 2.46 0.00 0.59 0.00 1.47 3.09 4.23 1.31 0.00 1.22 0.00 0.61 0.00 2.00 1.57 0.69 0.00 0.53 1.29 0.00 0.48 0.00 0.00 0.00 0.00 0.74 0.55 1.15 0.00 1.48 0.00 0.00 1.67 1.26 0.74 0.00 0.00 K intron_retention CG14414,I_chrX_14474880_14474927 chrX + chrX_14474880_14474997 chrX_14474879_14474880;chrX_14474997_14474998 chrX_14474780_14474879;chrX_14474998_14475027 55.20 66.67 78.57 64.29 88.89 69.23 75.00 42.86 55.56 50.00 54.55 53.85 NA 66.67 73.33 85.71 87.50 NA 87.50 64.29 NA 50.00 54.84 38.71 46.15 100.00 59.09 28.57 47.62 50.00 37.50 37.04 41.94 75.00 56.25 61.90 44.00 33.33 56.25 44.83 50.00 56.00 NA 50.00 43.59 47.73 53.85 42.55 57.14 58.82 69.57 NA 51.72 60.71 83.33 44.83 72.41 35.71 K intron_retention CG6199 chr3L - chr3L_11192493_11195314 chr3L_11192492_11192493;chr3L_11195314_11195315 chr3L_11192366_11192492;chr3L_11195315_11195440 3.28 0.00 0.00 0.88 3.28 5.77 5.68 1.49 2.17 0.00 7.69 1.74 5.80 4.69 1.37 2.11 2.86 3.03 5.19 4.00 4.41 6.38 3.12 2.70 7.89 1.41 3.28 0.00 0.00 3.70 6.33 6.56 0.00 3.79 0.00 4.44 2.94 6.98 4.00 1.81 4.17 2.27 0.00 1.25 0.00 4.00 8.00 0.00 3.31 2.70 4.11 4.65 2.90 5.71 3.49 3.28 6.78 2.38 K intron_retention Cdc42,I_chrX_19591186_19591967,I_chrX_19591567_19591967,I_chrX_19591671_19591967 chrX + chrX_19591186_19591967 chrX_19591185_19591186;chrX_19591967_19591968 chrX_19591086_19591185;chrX_19591968_19592067 98.69 99.22 97.73 98.63 97.28 97.74 98.08 98.10 98.53 98.59 100.00 98.37 97.67 98.74 99.07 98.96 98.22 98.51 99.51 98.51 99.49 100.00 97.67 99.23 98.68 99.08 97.59 98.41 95.12 96.81 97.70 98.46 99.45 98.95 100.00 98.41 98.65 98.82 98.23 99.26 98.85 98.96 98.69 98.96 98.23 98.90 98.51 99.09 98.92 100.00 100.00 98.86 98.33 100.00 98.36 98.81 99.12 100.00 K jcn_only_AA I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_927771_929704,CG32021,RI_chr4_928180_928245,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_928180_928245;chr4_928193_928245 chr4_928177_928245 chr4_928246_928314;chr4_928109_928176 65.22 46.43 68.89 63.89 70.73 66.67 61.49 63.27 70.00 59.32 73.17 62.35 72.41 54.84 80.00 67.21 61.76 69.39 85.37 59.21 70.83 63.71 63.37 63.95 64.62 72.73 61.33 69.09 68.92 61.54 63.79 63.64 46.94 65.52 69.70 57.33 63.83 53.03 56.31 70.55 53.85 65.22 66.00 67.12 75.47 65.85 64.71 65.38 66.23 68.18 74.44 67.69 57.69 67.50 64.58 60.00 61.70 65.22 K intron_retention Df31,RE_chr2L_21628206_21629662,I_chr2L_21628206_21629666,I_chr2L_21628210_21628515,I_chr2L_21628210_21628944,I_chr2L_21628210_21629216,EI_chr2L_21628210_21629715,REI_chr2L_21628210_21629884,I_chr2L_21628224_21629666,I_chr2L_21628734_21629666 chr2L - chr2L_21628210_21629715 chr2L_21628209_21628210;chr2L_21629715_21629716 chr2L_21628124_21628209;chr2L_21629716_21629762 99.88 100.00 100.00 99.66 99.73 100.00 99.86 99.88 100.00 99.77 99.72 99.85 100.00 100.00 100.00 99.86 99.78 100.00 99.83 99.88 100.00 99.64 99.88 99.84 100.00 99.30 99.71 99.55 99.48 99.56 99.69 99.55 99.68 100.00 100.00 99.68 99.84 100.00 100.00 100.00 99.60 100.00 99.79 100.00 100.00 100.00 99.81 100.00 100.00 100.00 100.00 99.81 99.72 100.00 100.00 100.00 100.00 100.00 K intron_retention CG42550 chr3R - chr3R_3826595_3826641 chr3R_3826594_3826595;chr3R_3826641_3826642 chr3R_3826527_3826594;chr3R_3826642_3826710 81.80 69.23 81.25 75.00 60.00 93.33 80.95 83.33 74.29 87.50 64.29 84.62 66.67 73.33 85.00 88.89 80.00 93.33 88.24 80.00 NA NA 92.31 69.23 63.64 61.54 73.33 NA NA NA 85.00 69.23 NA 77.42 88.89 91.67 NA 66.67 NA 78.95 60.00 85.19 82.35 90.00 80.00 80.95 88.89 NA 86.67 88.24 84.21 53.33 100.00 90.91 95.65 63.64 95.65 88.24 K intron_retention Tfb4,I_chr2L_1156009_1158078,I_chr2L_1153732_1157370,I_chr2L_1163632_1163759 chr2L - chr2L_1150327_1150378 chr2L_1150326_1150327;chr2L_1150378_1150379 chr2L_1150131_1150326;chr2L_1150379_1150559 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 2.20 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9003728_9004854;chrX_9004021_9004854;chrX_9003790_9004854 chrX_9003918_9004854 chrX_9004855_9004862;chrX_9003721_9003727 0.00 NA NA 0.00 NA NA 3.33 0.00 2.56 NA NA 3.85 NA 3.57 0.00 2.33 NA NA 0.00 0.00 NA NA 0.00 NA NA 4.17 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 2.94 NA NA NA K alternative_donor CG9821,I_chr3R_4644986_4645248,I_chr3R_4644986_4645577,I_chr3R_4644986_4645648,I_chr3R_4644986_4646263,RI_chr3R_4644986_4646264,RI_chr3R_4645903_4646033 chr3R - chr3R_4644986_4645248;chr3R_4644986_4645577;chr3R_4644986_4645649 chr3R_4644986_4646033 chr3R_4644886_4644985;chr3R_4646034_4646133 23.43 24.09 23.43 24.04 28.04 28.22 21.76 24.69 23.79 31.34 27.94 20.73 28.40 25.00 22.92 21.82 27.84 21.15 24.81 21.53 20.34 20.39 17.95 16.50 18.39 23.98 23.24 23.53 50.00 29.17 26.16 29.17 28.83 25.12 21.88 21.77 15.22 25.37 19.54 23.41 38.60 23.94 18.75 15.38 35.29 21.98 18.99 31.51 22.63 23.61 23.40 25.81 14.63 13.89 22.65 20.69 19.23 27.78 K cassette CG9171,RI_chr2L_5792418_5799117,I_chr2L_5799412_5800043 chr2L - chr2L_5787985_5800043 chr2L_5787985_5799117;chr2L_5799273_5800043 chr2L_5799118_5799272 chr2L_5787965_5787984;chr2L_5800044_5800143 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 66.67 NA NA 100.00 92.31 90.00 100.00 94.12 91.67 100.00 100.00 91.67 NA NA 100.00 85.71 NA 100.00 NA NA NA NA 87.50 NA NA 100.00 NA NA 87.50 NA NA NA NA 86.67 100.00 100.00 NA NA NA 100.00 93.75 NA NA 100.00 NA NA 90.00 NA NA 100.00 K alternative_acceptor Pur-alpha,I_chr4_581447_585166 chr4 + chr4_581038_581099 chr4_581038_581096 chr4_580998_581037;chr4_581100_581209 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA 87.50 NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K cassette CG10260 chrX + chrX_2520959_2521895 chrX_2520959_2521456;chrX_2521517_2521895 chrX_2521457_2521516 chrX_2519897_2520958;chrX_2521896_2522397 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907848_9908424;chr2L_9908142_9908424 chr2L_9907784_9908424 chr2L_9908425_9908505;chr2L_9907756_9907783 78.67 80.43 74.29 78.85 76.92 71.43 73.47 82.28 76.58 64.29 80.00 74.32 73.33 76.60 77.78 78.87 81.63 83.72 84.21 79.12 78.57 67.50 83.54 85.71 78.05 82.93 80.95 76.92 78.95 68.97 77.14 76.00 63.24 82.35 78.57 84.62 78.85 81.40 80.85 77.03 73.08 78.95 81.48 85.42 68.18 85.00 77.14 60.71 78.67 77.78 76.06 76.92 84.38 81.82 83.05 77.14 84.00 78.95 K intron_retention gw,I_chr4_678308_678527,I_chr4_679135_681671 chr4 - chr4_678311_678527 chr4_678310_678311;chr4_678527_678528 chr4_676842_678310;chr4_678528_678627 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Npc2b,I_chr3R_9916602_9917530 chr3R + chr3R_9916599_9917019 chr3R_9916602_9917019 chr3R_9917020_9917123;chr3R_9916502_9916598 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG11880,I_chr3R_24949827_24951052,CE_chr3R_24962426_24962797 chr3R + chr3R_24949827_24951052;chr3R_24949827_24951126 chr3R_24949827_24951129 chr3R_24949727_24949826;chr3R_24951130_24951152 5.43 1.00 9.65 4.55 6.03 3.74 4.49 5.88 3.27 5.43 7.61 5.49 3.37 11.82 5.11 6.43 4.00 7.77 4.31 5.80 4.88 3.03 7.56 8.99 9.88 7.19 5.30 8.44 4.02 4.32 5.66 4.86 7.49 3.59 3.70 8.00 2.67 5.26 2.70 5.22 6.06 5.86 0.00 4.92 7.64 3.33 7.45 5.86 4.17 4.92 8.11 9.20 2.00 0.00 6.71 7.14 6.33 8.77 K alternative_donor CG2924,I_chrX_2161327_2161790,REI_chrX_2161327_2162919,I_chrX_2163738_2164560,I_chrX_2168373_2168893 chrX - chrX_2161327_2162970 chrX_2161327_2161790 chrX_2161227_2161326;chrX_2162971_2163019 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Bet3,Nf-YA chr3L - chr3L_9435067_9435223 chr3L_9435066_9435067;chr3L_9435223_9435224 chr3L_9433670_9435066;chr3L_9435224_9435352 5.71 0.00 3.85 6.38 0.00 NA 12.00 11.11 5.17 0.00 19.05 8.51 NA 0.00 12.12 8.33 0.00 8.33 0.00 10.42 4.76 0.00 6.06 5.71 NA NA 9.30 15.00 4.76 0.00 5.00 0.00 4.35 9.68 0.00 7.14 2.27 0.00 6.56 5.88 14.29 7.32 NA 0.00 0.00 11.43 6.67 0.00 7.14 9.52 0.00 0.00 5.88 6.67 0.00 8.33 5.71 0.00 K jcn_only_AD ced-6,I_chr2R_5324717_5324924,I_chr2R_5328640_5328696 chr2R - chr2R_5325238_5329011;chr2R_5325238_5329037 chr2R_5325238_5328696 chr2R_5324931_5325237;chr2R_5329038_5329082 98.06 99.01 97.62 97.96 96.67 98.23 98.78 96.68 98.26 94.74 99.20 96.43 99.28 100.00 95.03 99.31 99.21 96.43 98.48 98.92 100.00 89.47 97.66 95.92 100.00 97.74 98.53 97.62 97.37 98.00 98.51 95.24 94.12 99.00 100.00 100.00 97.81 96.58 100.00 94.89 98.46 97.95 98.11 98.65 97.87 99.01 100.00 96.77 97.68 96.71 97.74 97.96 100.00 100.00 97.08 98.06 100.00 98.59 K alternative_acceptor CG11523 chr3L - chr3L_22259084_22259175 chr3L_22259087_22259175 chr3L_22259176_22259747;chr3L_22258906_22259083 92.86 NA NA 91.67 NA NA 90.91 95.24 92.86 NA NA 92.86 77.78 100.00 100.00 95.00 NA NA 100.00 92.86 NA NA NA NA NA NA NA NA 87.50 NA 100.00 84.62 85.71 93.75 100.00 NA NA NA NA 87.50 85.00 94.12 NA NA 83.33 96.15 100.00 80.00 93.33 87.50 87.50 NA NA 75.00 90.00 80.00 NA 96.77 K jcn_only_AA Idh,I_chr3L_8351006_8351949,I_chr3L_8351036_8351655 chr3L - chr3L_8351006_8353892 chr3L_8351036_8353892 chr3L_8353893_8353937;chr3L_8350936_8351005 1.90 0.00 1.92 0.00 2.94 3.57 4.90 2.20 3.97 16.46 0.00 3.30 0.00 3.45 1.89 1.09 0.00 0.00 0.00 0.00 4.35 9.72 3.95 3.05 1.52 NA 2.04 5.43 2.78 0.00 2.00 0.00 2.88 1.37 2.74 1.47 0.69 3.45 0.00 5.26 2.90 3.70 2.94 1.52 3.17 0.63 1.12 1.28 1.00 2.02 0.80 2.24 1.33 4.29 0.00 1.23 1.27 0.00 K cassette sdt,E_chrX_8118081_8119115,C_chrX_8118081_8119117,I_chrX_8131684_8131842 chrX + chrX_8118081_8121903 chrX_8118081_8119111;chrX_8120117_8121903 chrX_8119112_8120116 chrX_8117989_8118080;chrX_8121904_8122131 60.42 61.33 54.72 87.93 65.22 59.57 70.00 72.55 69.83 60.00 39.13 67.27 60.00 65.71 64.29 84.44 17.39 48.65 73.68 76.52 47.83 67.74 61.63 51.90 56.60 66.67 60.61 46.15 53.70 58.21 68.42 51.43 72.83 75.81 50.94 57.97 63.27 54.55 63.87 39.58 65.52 67.57 72.41 57.29 53.70 48.98 60.42 56.57 67.42 52.54 53.09 58.33 69.23 47.50 68.75 60.00 55.17 75.00 K intron_retention osa chr3R - chr3R_13519636_13519857 chr3R_13519635_13519636;chr3R_13519857_13519858 chr3R_13519437_13519635;chr3R_13519858_13520017 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.55 1.32 0.00 0.00 0.00 0.00 1.54 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 1.20 0.76 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_17033390_17036510 chr3R_17036428_17036510 chr3R_17036511_17036801 4.17 2.08 7.14 2.17 2.44 6.82 5.10 3.37 4.62 0.00 9.80 3.45 1.89 1.52 6.67 6.59 4.55 1.72 3.12 4.05 3.08 4.44 4.17 4.17 4.88 2.44 4.05 3.28 1.72 8.33 3.80 6.06 4.08 3.03 4.65 21.74 7.14 4.44 3.23 2.90 7.81 3.23 10.87 7.35 9.38 15.38 5.56 3.45 6.82 6.41 4.94 3.85 0.00 0.00 6.15 4.17 6.82 6.41 K jcn_only_AD Zyx102EF,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1080463_1081118 chr4_1080463_1081038 chr4_1080446_1080462;chr4_1081119_1081180 97.50 95.45 96.77 98.48 NA NA 97.44 96.43 98.31 NA 100.00 90.32 100.00 100.00 82.14 100.00 95.24 100.00 100.00 97.56 NA NA 96.77 95.65 86.36 100.00 100.00 NA NA 100.00 92.86 NA 100.00 93.33 NA NA NA 95.45 NA 100.00 100.00 100.00 NA NA NA 100.00 NA NA 96.77 82.61 94.59 NA NA NA 96.43 NA 100.00 94.44 K intron_retention Pkn,I_chr2R_5171635_5172166 chr2R - chr2R_5141921_5141985 chr2R_5141920_5141921;chr2R_5141985_5141986 chr2R_5141780_5141920;chr2R_5141986_5142093 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 K jcn_only_AD F_chr2L_15260838_15261717,cul-3 chr2L - chr2L_15271144_15271833;chr2L_15271144_15271322 chr2L_15271144_15271202 chr2L_15270905_15271143;chr2L_15271834_15271894 8.82 9.09 5.00 8.39 5.77 11.54 7.46 8.66 7.69 NA 11.63 12.77 8.82 8.20 10.53 6.73 11.59 6.67 7.95 9.17 9.52 31.15 10.34 9.09 17.39 8.05 8.75 12.12 11.63 14.52 13.85 4.35 15.00 7.63 10.17 4.65 16.67 10.42 4.08 9.46 NA 6.87 5.26 12.16 8.00 8.82 8.82 12.50 5.19 8.00 8.45 7.69 3.85 10.34 10.59 2.78 8.11 15.62 K intron_retention CG8412,I_chr3R_5583152_5583200 chr3R + chr3R_5583152_5583217 chr3R_5583151_5583152;chr3R_5583217_5583218 chr3R_5583052_5583151;chr3R_5583218_5583300 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 4.55 0.00 0.00 5.26 0.00 0.00 0.00 3.85 0.00 0.00 0.00 1.59 0.00 21.74 9.38 0.00 10.53 0.00 4.55 NA 7.41 4.17 3.39 0.00 0.00 5.56 0.00 0.00 2.56 0.00 3.23 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.88 3.33 6.06 0.00 NA 0.00 0.00 0.00 0.00 NA K cassette Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16107821_16108768 chr3L_16107821_16107893;chr3L_16107944_16108768 chr3L_16107894_16107943 chr3L_16107721_16107820;chr3L_16108769_16108930 4.32 5.21 6.67 2.00 4.26 4.88 4.48 2.74 6.29 11.32 25.64 8.13 2.27 4.65 6.12 5.26 2.38 4.65 2.70 2.43 14.63 7.75 3.92 2.05 2.38 12.50 5.26 5.93 9.90 3.23 6.25 5.00 3.23 3.88 2.60 2.73 3.35 4.14 4.52 4.32 5.26 2.44 2.94 4.69 4.55 3.75 2.27 4.76 4.31 1.22 3.97 1.72 8.97 5.88 2.22 2.63 1.59 8.82 K intron_retention RI_chr3L_20370940_20371530,I_chr3L_20374844_20374891,fbl chr3L + chr3L_20379955_20381768 chr3L_20379954_20379955;chr3L_20381768_20381769 chr3L_20379894_20379954;chr3L_20381769_20381947 8.61 0.00 NA 50.00 NA NA NA 15.00 20.00 NA NA 5.00 NA NA NA 20.00 NA NA NA 17.39 NA NA 33.33 5.56 NA 7.69 23.53 NA NA NA NA NA NA 21.43 NA NA 10.00 NA 0.00 7.14 NA 9.52 NA 4.76 NA NA 0.00 0.00 16.67 0.00 6.67 NA NA NA NA NA NA NA N cassette I_chrX_19573364_19573474,Mer,E_chrX_19584965_19587100,CG14229 chrX - chrX_19585968_19586333 chrX_19585968_19586064;chrX_19586275_19586333 chrX_19586065_19586274 chrX_19585731_19585967;chrX_19586334_19587282 79.55 83.67 75.00 73.68 100.00 70.00 83.56 81.25 83.96 100.00 73.17 74.12 74.00 100.00 83.64 83.33 79.07 66.67 79.59 73.00 83.33 85.07 81.82 80.65 100.00 79.17 82.61 83.33 69.44 63.93 75.64 69.81 63.11 79.76 79.25 100.00 85.00 80.95 82.93 83.17 100.00 75.79 79.55 85.00 69.84 73.26 74.36 57.89 80.61 91.46 79.22 82.93 72.73 75.56 77.19 78.12 78.95 57.66 K jcn_only_AD CG5284,I_chr3L_16086347_16086804 chr3L + chr3L_16086347_16086804 chr3L_16086749_16086804 chr3L_16086805_16086904;chr3L_16086247_16086346 100.00 100.00 100.00 100.00 100.00 99.02 100.00 100.00 100.00 100.00 99.28 99.45 100.00 98.89 100.00 100.00 99.26 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.12 99.26 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.11 100.00 98.67 100.00 100.00 100.00 100.00 100.00 100.00 99.38 100.00 100.00 100.00 100.00 100.00 100.00 98.84 K jcn_only_AD inaE chrX + chrX_13678310_13679739;chrX_13678223_13679739 chrX_13678262_13679739 chrX_13679740_13679985;chrX_13677782_13678222 1.90 2.27 0.00 0.00 0.00 5.26 0.00 2.30 0.74 0.00 3.57 1.35 0.00 1.67 1.92 2.97 2.22 0.00 0.00 0.93 0.00 10.53 3.85 4.44 2.94 0.00 0.00 3.85 3.03 4.17 4.55 3.33 1.89 1.01 4.26 5.00 1.45 0.00 0.00 1.79 5.77 2.53 1.82 2.17 NA 6.25 0.00 7.02 1.89 0.00 2.90 5.56 0.00 0.00 0.00 4.35 2.78 2.94 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2395659 chrX_2388671_2390808;chrX_2390959_2391350;chrX_2391522_2393243;chrX_2393712_2395659 chrX_2390809_2390958;chrX_2391351_2391521;chrX_2393244_2393711 chrX_2388641_2388670;chrX_2395660_2395759 25.00 NA NA NA NA NA NA NA 0.00 NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG17082,I_chr2R_632143_635290,R_chr2R_642176_644740,I_chr2R_644094_644145,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_632400_636726 chr2R_632399_632400;chr2R_636726_636727 chr2R_632352_632399;chr2R_636727_636891 45.45 NA NA NA NA NA 35.29 NA NA NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA NA K cassette Pur-alpha,I_chr4_581447_585166 chr4 + chr4_578795_580720 chr4_578795_578850;chr4_578906_580720 chr4_578851_578905 chr4_578726_578794;chr4_580721_580926 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor Mgat2,I_chr3R_25845406_25845472,I_chr3R_25845406_25846373 chr3R - chr3R_25845406_25845472;chr3R_25845406_25847371;chr3R_25845406_25846373 chr3R_25845406_25847670 chr3R_25845317_25845405;chr3R_25847671_25847898 0.00 5.88 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 3.45 0.00 4.55 4.17 0.00 0.00 0.00 0.00 6.67 13.04 5.88 0.00 0.00 0.00 4.76 0.00 4.76 5.88 7.69 5.00 0.00 5.56 3.57 0.00 0.00 5.56 0.00 0.00 10.34 3.85 0.00 4.35 0.00 0.00 0.00 5.26 7.69 10.00 0.00 K alternative_donor endos,I_chr3L_14024099_14024488,I_chr3L_14024103_14024158,I_chr3L_14024103_14024546,noncoding_12505,I_chr3L_14024496_14024546 chr3L - chr3L_14024103_14024488;chr3L_14024103_14024158;chr3L_14024103_14024407 chr3L_14024103_14024546 chr3L_14024003_14024102;chr3L_14024547_14024588 3.91 5.00 3.53 0.77 4.55 1.41 5.21 0.78 3.91 5.97 2.60 0.79 4.65 2.63 0.93 3.77 2.78 1.22 2.00 3.80 1.32 10.91 12.36 9.40 3.92 0.00 1.01 5.26 3.23 4.84 0.00 3.70 19.54 4.20 3.03 1.82 6.41 9.84 6.25 5.84 1.52 4.40 4.11 1.45 4.08 4.42 4.05 4.40 2.61 9.18 2.56 0.00 3.33 8.45 1.04 4.88 6.12 5.97 K jcn_only_AA CG7987,RI_chr3R_10400799_10401492 chr3R - chr3R_10400608_10401492;chr3R_10400799_10401492 chr3R_10400782_10401492 chr3R_10401493_10401559;chr3R_10400270_10400607 43.17 29.79 41.86 32.14 40.74 31.58 66.23 52.86 51.22 NA 37.04 48.54 88.46 54.00 40.82 35.80 47.83 25.71 60.38 40.74 31.82 44.07 30.51 26.09 40.00 57.89 32.65 23.53 50.00 45.00 42.42 43.48 47.83 41.07 54.05 41.18 36.36 26.67 39.02 57.32 NA 45.31 47.06 48.39 23.81 50.00 48.48 53.70 44.33 NA 43.55 51.52 47.83 42.86 41.07 20.69 33.33 45.16 K intron_retention Mt2,I_chr2L_12099367_12099435 chr2L + chr2L_12096647_12096695 chr2L_12096646_12096647;chr2L_12096695_12096696 chr2L_12096635_12096646;chr2L_12096696_12097675 15.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA 0.00 NA K intron_retention Vps45,CG16789 chr3R + chr3R_5390103_5390153 chr3R_5390102_5390103;chr3R_5390153_5390154 chr3R_5389904_5390102;chr3R_5390154_5391814 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 N cassette spri,I_chrX_10404621_10469422,I_chrX_10413811_10440661,I_chrX_10417598_10440661 chrX - chrX_10417598_10440661;chrX_10413811_10440661 chrX_10413811_10438418,chrX_10417598_10438418;chrX_10438538_10440661 chrX_10438419_10438537 chrX_10413711_10413810;chrX_10440662_10440749 88.89 NA 100.00 87.50 85.71 NA 90.91 91.67 100.00 100.00 85.71 90.00 83.33 NA 90.00 71.43 NA NA 88.89 94.74 87.50 80.95 87.50 100.00 100.00 100.00 100.00 85.71 71.43 100.00 100.00 83.33 66.67 93.33 85.71 90.91 100.00 100.00 78.57 94.12 83.33 91.67 85.71 84.62 100.00 87.50 87.50 88.89 93.75 83.33 85.71 87.50 85.71 NA 100.00 80.00 NA NA K intron_retention cm chrX - chrX_6904878_6904932 chrX_6904877_6904878;chrX_6904932_6904933 chrX_6904552_6904877;chrX_6904933_6905020 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 2.27 0.00 0.00 0.00 0.00 0.00 0.00 2.63 2.56 3.33 0.00 4.08 0.00 3.77 NA 0.00 3.45 0.00 3.12 2.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA RhoGAP71E,I_chr3L_15583097_15589765 chr3L + chr3L_15582377_15582458 chr3L_15582377_15582436 chr3L_15581999_15582376;chr3L_15582459_15583096 4.17 NA NA NA NA NA 8.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.57 NA NA NA NA NA NA NA 0.00 NA NA 7.14 0.00 NA NA NA NA NA 4.17 4.76 NA NA NA NA 0.00 NA 4.88 NA NA NA NA NA NA NA NA NA NA K intron_retention scra,EI_chr2R_3480349_3480405 chr2R + chr2R_3480039_3480199 chr2R_3480038_3480039;chr2R_3480199_3480200 chr2R_3479867_3480038;chr2R_3480200_3480313 1.26 0.97 0.93 0.77 0.00 2.34 1.26 1.26 1.10 0.00 0.00 1.50 0.00 1.61 0.00 2.15 0.00 1.52 1.43 0.83 0.00 1.01 1.63 0.91 1.23 2.16 3.51 1.80 0.84 0.80 1.38 0.84 0.52 0.76 1.73 1.26 0.71 2.44 0.65 1.30 1.05 1.36 2.72 1.35 1.37 2.07 1.89 0.00 1.27 3.57 1.85 0.00 3.03 1.91 1.06 3.52 1.87 1.09 K intron_retention Ca-P60A,I_chr2R_19817636_19817680,I_chr2R_19820338_19823289 chr2R - chr2R_19816955_19817022 chr2R_19816954_19816955;chr2R_19817022_19817023 chr2R_19816837_19816954;chr2R_19817023_19817140 0.00 0.00 0.00 0.45 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 2.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA eIF-1A chr3R + chr3R_14100864_14107415 chr3R_14100864_14101131 chr3R_14100759_14100863;chr3R_14107416_14107515 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA tou,I_chr2R_7468394_7468453,RI_chr2R_7474644_7475275,I_chr2R_7479681_7491857,I_chr2R_7504956_7505020 chr2R - chr2R_7469255_7470519 chr2R_7469651_7470519 chr2R_7470520_7474530;chr2R_7469133_7469254 7.41 7.03 2.27 7.41 4.94 1.43 7.87 9.24 5.38 7.62 5.80 4.95 15.94 8.79 4.27 10.74 4.82 8.41 10.71 8.89 4.11 5.96 8.29 9.43 4.39 2.38 7.46 14.42 9.00 7.96 10.17 6.93 7.69 2.76 8.55 14.55 5.95 7.56 4.70 7.52 8.74 7.33 3.85 6.75 4.86 8.39 6.61 7.57 7.61 13.86 7.95 4.17 6.32 4.94 5.36 5.60 7.69 5.53 K alternative_acceptor I_chr2L_114992_156735,RI_chr2L_114992_155545,RI_chr2L_114992_155566,I_chr2L_114992_155637,I_chr2L_114992_156175,RI_chr2L_155430_155637,CG11455,CG3436 chr2L + chr2L_155430_155493;chr2L_155430_155566 chr2L_155430_155637 chr2L_155424_155429;chr2L_155638_155645 1.52 1.52 1.64 4.55 3.64 1.72 1.20 2.15 1.57 0.00 2.04 1.79 0.00 1.72 4.00 2.06 0.00 1.45 1.52 2.10 0.00 5.26 1.25 2.27 0.00 0.00 1.49 3.03 2.56 0.00 0.00 2.13 2.33 1.08 0.00 0.00 1.23 1.79 0.00 1.08 3.03 1.83 4.76 3.80 3.12 1.09 4.30 0.00 3.09 0.00 1.39 0.00 0.00 1.12 1.23 0.00 1.96 0.00 K alternative_donor CG14767,RI_chr2R_4607538_4607606,CG30357,RI_chr2R_4610372_4610761 chr2R - chr2R_4607538_4610761 chr2R_4607538_4607606 chr2R_4607438_4607537;chr2R_4610762_4610861 1.09 0.68 0.95 0.61 1.00 0.95 4.65 1.38 1.27 4.05 1.14 0.95 1.91 1.55 1.09 0.99 1.72 1.91 1.92 2.35 1.25 1.47 0.57 0.85 1.40 2.94 1.60 1.19 0.84 0.76 2.87 1.00 0.82 1.59 1.32 1.46 0.68 0.61 0.72 1.00 1.14 1.15 1.93 0.56 1.08 1.05 0.65 2.62 1.47 0.78 0.90 0.89 0.49 0.53 1.47 0.59 0.57 1.24 K cassette HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13165623_13176198 chrX_13165623_13170467;chrX_13170581_13176198 chrX_13170468_13170580 chrX_13165515_13165622;chrX_13176199_13176262 93.52 97.47 98.88 81.48 95.00 97.50 76.38 96.89 93.65 93.10 87.32 91.84 89.33 95.18 95.10 92.45 94.12 93.75 94.81 92.50 95.45 84.95 94.57 93.52 81.33 81.32 87.61 94.87 84.42 93.39 91.40 96.23 95.08 94.57 98.75 77.91 95.83 89.69 97.09 94.61 84.72 94.29 96.61 95.74 93.18 94.81 90.16 93.29 92.12 97.06 90.70 95.71 93.02 88.10 92.11 96.83 91.30 92.75 K intron_retention E_chr3R_6935653_7037028,nocturnin,RI_chr3R_7026291_7032627,I_chr3R_7029508_7030286 chr3R + chr3R_7032978_7033081 chr3R_7032977_7032978;chr3R_7033081_7033082 chr3R_7032915_7032977;chr3R_7033082_7033203 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 4.65 0.00 NA 9.38 0.00 0.00 0.00 6.90 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.76 0.00 3.85 7.69 NA 0.00 0.00 NA NA 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.03 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 3.85 3.51 0.00 K intron_retention C3G chrX - chrX_6681282_6681383 chrX_6681281_6681282;chrX_6681383_6681384 chrX_6681129_6681281;chrX_6681384_6681553 27.31 25.55 19.32 26.74 27.78 21.53 45.35 23.96 24.44 28.21 29.91 27.31 24.56 29.06 25.95 21.39 31.25 22.88 33.33 25.51 33.61 44.44 26.94 30.43 57.02 47.79 27.33 32.14 27.52 21.74 27.78 36.00 27.37 28.02 25.71 59.85 25.60 36.75 23.38 27.75 53.57 26.90 25.60 24.24 24.27 34.56 19.61 34.33 25.69 27.94 25.84 23.47 18.52 19.12 27.10 33.33 22.52 30.89 K alternative_acceptor noncoding_7373,REI_chr2R_12706037_12706094 chr2R - chr2R_12706006_12706094 chr2R_12706037_12706094 chr2R_12706095_12706194;chr2R_12705937_12706005 18.82 NA NA NA NA NA 14.29 16.67 21.43 NA NA 22.73 30.77 36.36 NA NA NA 17.39 NA 35.71 NA NA NA NA NA NA NA NA NA NA 9.09 NA NA NA NA NA NA NA NA 15.79 NA 17.65 NA 20.00 6.67 NA NA NA 35.71 NA 25.00 NA NA NA NA NA NA 4.76 K intron_retention RpL17,I_chrX_6637182_6638207,snoRNA:Psi28S-3436b,snoRNA:Psi28S-3436a,snoRNA:Psi28S-1060,RI_chrX_6637182_6637528,I_chrX_6637182_6637973 chrX - chrX_6636290_6637090 chrX_6636289_6636290;chrX_6637090_6637091 chrX_6636192_6636289;chrX_6637091_6637181 0.05 0.02 0.06 0.05 0.06 0.10 0.14 0.04 0.08 0.06 0.11 0.07 0.09 0.06 0.02 0.05 0.00 0.04 0.09 0.03 0.05 0.06 0.05 0.06 0.03 0.05 0.09 0.41 0.05 0.07 0.07 0.07 0.00 0.08 0.05 0.06 0.04 0.04 0.05 0.05 0.00 0.03 0.03 0.03 0.05 0.05 0.02 0.07 0.12 0.04 0.07 0.04 0.06 0.03 0.05 0.02 0.05 0.08 K jcn_only_AD Fs(2)Ket,I_chr2L_20734991_20735252,I_chr2L_20735091_20735305,I_chr2L_20735170_20735252,I_chr2L_20738976_20749527 chr2L + chr2L_20735170_20735252;chr2L_20734991_20735252 chr2L_20735091_20735252 chr2L_20735253_20735352;chr2L_20734943_20734990 95.84 98.21 97.30 93.41 94.83 98.21 94.17 95.54 94.89 NA 94.87 91.67 92.98 95.95 96.10 96.12 96.30 92.31 93.75 95.15 95.74 97.62 97.56 97.37 100.00 100.00 94.59 90.32 NA 95.24 95.35 NA 97.50 96.99 97.06 100.00 91.30 100.00 92.86 91.94 NA 96.43 95.08 95.65 NA 96.30 95.24 96.43 95.27 90.91 97.14 95.24 100.00 100.00 97.65 100.00 100.00 81.82 K alternative_acceptor CG9855,RI_chr3R_222522_222581,RI_chr3R_222525_222604,I_chr3R_223384_223429 chr3R - chr3R_222528_222581;chr3R_222525_222581 chr3R_222522_222581 chr3R_222582_222650;chr3R_222457_222521 3.45 7.14 13.64 2.44 5.88 0.00 9.38 2.78 2.13 4.17 5.26 2.86 5.88 0.00 6.67 3.70 0.00 0.00 4.35 2.33 5.26 3.92 3.03 3.12 4.55 8.33 0.00 4.76 2.08 3.12 0.00 2.86 2.33 6.45 5.26 3.57 3.12 3.70 2.94 7.14 2.17 0.00 5.00 3.45 4.55 1.96 0.00 6.67 2.17 6.25 0.00 4.35 3.12 3.70 0.00 5.71 0.00 6.41 K intron_retention betaCop chrX - chrX_18276347_18276414 chrX_18276346_18276347;chrX_18276414_18276415 chrX_18276073_18276346;chrX_18276415_18276576 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.54 0.00 0.00 0.00 0.00 0.38 1.15 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.74 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.46 0.00 K intron_retention CG3305,CREI_chr2L_21573959_21574786,E_chr2L_21574285_21574462 chr2L + chr2L_21573562_21574786 chr2L_21573561_21573562;chr2L_21574786_21574787 chr2L_21573425_21573561;chr2L_21574787_21574886 0.20 0.97 0.97 0.81 0.00 1.03 0.83 0.52 0.58 0.00 0.00 0.87 0.44 0.95 0.60 1.09 0.76 0.76 0.68 0.91 1.00 0.00 0.20 0.00 0.00 0.67 0.48 0.00 0.00 0.00 0.54 0.00 1.06 0.45 0.00 0.60 0.00 0.00 0.00 0.74 0.00 0.35 1.44 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 K alternative_acceptor Aats-phe chr2R + chr2R_9857108_9857181 chr2R_9857108_9857176 chr2R_9855852_9857107;chr2R_9857182_9857407 100.00 97.06 96.88 100.00 100.00 95.45 100.00 100.00 98.31 100.00 95.83 97.78 94.12 95.24 100.00 96.97 100.00 100.00 96.43 100.00 95.00 100.00 97.30 100.00 94.44 100.00 100.00 100.00 95.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 98.11 100.00 100.00 100.00 96.88 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 K alternative_donor I_chr2R_4783150_4783708,Ggamma1,noncoding_5300 chr2R + chr2R_4788937_4789641 chr2R_4789028_4789641 chr2R_4789642_4789782;chr2R_4788908_4788936 100.00 100.00 100.00 90.91 100.00 NA 92.31 100.00 95.45 88.89 90.91 100.00 91.67 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 91.67 100.00 100.00 100.00 93.75 91.67 91.67 100.00 100.00 100.00 85.71 100.00 100.00 NA NA 81.82 100.00 100.00 91.67 K alternative_donor vig chr2L - chr2L_15067690_15067952;chr2L_15067690_15067995;chr2L_15067690_15067868;chr2L_15067690_15068029;chr2L_15067690_15067999 chr2L_15067690_15067915 chr2L_15066937_15067689;chr2L_15068030_15068031 90.00 82.35 95.65 93.10 88.89 82.35 93.10 87.50 89.09 89.47 95.24 87.50 88.89 85.71 95.24 93.55 93.75 87.50 95.83 91.07 95.83 85.29 94.74 86.67 100.00 95.24 88.89 78.38 82.14 93.33 95.45 88.24 80.00 94.44 100.00 88.89 83.33 84.62 90.91 80.00 78.95 92.31 94.12 90.00 83.33 85.19 90.00 81.40 95.56 100.00 93.33 76.92 100.00 100.00 92.31 90.00 92.31 83.72 K intron_retention lva,CG6428 chrX - chrX_3858985_3859304 chrX_3858984_3858985;chrX_3859304_3859305 chrX_3858734_3858984;chrX_3859305_3859357 79.31 88.89 91.67 76.19 NA 62.50 77.78 84.00 76.00 NA 80.00 95.00 77.78 91.67 63.64 86.67 66.67 90.91 76.47 92.86 63.64 100.00 66.67 NA 88.89 91.67 90.91 70.00 100.00 NA 72.00 NA 100.00 75.00 87.50 100.00 80.00 NA NA 64.29 NA 70.83 NA 72.73 NA NA NA 89.47 79.31 NA 77.78 66.67 NA NA 78.26 NA NA NA K intron_retention CG14273 chr2L + chr2L_8343842_8344071 chr2L_8343841_8343842;chr2L_8344071_8344072 chr2L_8343383_8343841;chr2L_8344072_8344939 4.26 4.55 5.96 15.83 4.26 4.65 5.19 7.45 4.71 7.89 5.10 3.16 5.88 5.98 4.96 4.52 8.33 6.49 7.00 3.42 2.88 1.49 5.62 5.10 3.30 3.09 6.47 11.95 2.70 2.24 5.52 3.27 1.79 5.76 4.12 3.17 4.48 4.76 1.09 3.79 2.18 2.71 4.90 2.82 3.23 2.52 3.50 3.49 3.43 3.11 4.69 4.29 2.85 3.91 3.14 4.46 3.02 2.69 K intron_retention RI_chr2R_13458667_13458738,Rab4,I_chr2R_13461027_13461136 chr2R + chr2R_13461027_13461125 chr2R_13461026_13461027;chr2R_13461125_13461126 chr2R_13461020_13461026;chr2R_13461126_13461179 92.86 100.00 97.30 96.61 91.89 80.65 91.18 94.59 89.41 90.00 90.32 89.39 88.89 95.24 92.86 90.62 81.08 96.67 87.76 92.39 90.91 98.08 97.37 90.91 100.00 93.33 96.43 95.24 95.24 95.45 90.48 88.89 83.33 91.30 92.31 96.30 91.89 87.50 86.67 93.88 100.00 89.06 92.86 100.00 95.83 89.66 96.30 92.86 90.54 94.59 93.10 92.86 96.30 94.44 88.46 96.30 92.50 96.15 K jcn_only_AA CG17233,RI_chr3L_20232898_20232962 chr3L - chr3L_20228778_20229533 chr3L_20229429_20229533 chr3L_20229534_20231010;chr3L_20228602_20228777 33.69 12.50 NA 46.67 NA 14.29 NA NA 12.77 NA 20.00 11.11 NA NA 18.75 NA NA 16.67 12.50 15.87 NA NA 27.08 22.58 NA NA 9.09 25.81 38.10 35.29 NA 65.00 65.22 25.00 NA 34.48 17.07 31.03 34.04 40.00 NA 32.00 NA 33.33 50.00 34.38 42.42 54.29 35.56 39.13 28.12 40.00 46.67 44.44 33.33 43.75 52.00 47.50 K alternative_donor vig chr2L - chr2L_15067690_15067915;chr2L_15067690_15067952;chr2L_15067690_15067868;chr2L_15067690_15068029;chr2L_15067690_15067999 chr2L_15067690_15067995 chr2L_15066937_15067689;chr2L_15068030_15068031 6.25 11.76 4.35 3.45 5.56 11.76 3.45 3.12 7.27 5.26 0.00 7.50 5.56 9.52 4.76 3.23 6.25 6.25 4.17 5.36 0.00 11.76 5.26 13.33 0.00 4.76 11.11 16.22 7.14 6.67 4.55 0.00 10.00 2.78 0.00 0.00 11.11 7.69 9.09 10.00 15.79 5.13 0.00 6.67 11.11 14.81 10.00 13.95 2.22 0.00 6.67 15.38 0.00 0.00 3.85 10.00 7.69 11.63 K intron_retention CG9663,I_chr2L_3296691_3296743 chr2L - chr2L_3296486_3296543 chr2L_3296485_3296486;chr2L_3296543_3296544 chr2L_3295994_3296485;chr2L_3296544_3296690 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.11 3.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD alph,I_chr3R_25417890_25422962 chr3R + chr3R_25417890_25418993 chr3R_25417944_25418993 chr3R_25418994_25419629;chr3R_25417790_25417889 1.34 0.72 1.12 1.27 1.34 0.00 0.85 0.76 2.12 0.00 3.52 0.34 2.05 1.40 2.16 0.88 0.55 2.50 2.65 0.98 2.21 2.86 0.00 1.90 4.11 2.40 1.05 1.16 7.46 0.86 0.50 3.28 2.69 0.00 1.08 2.15 0.76 4.95 1.63 2.34 0.81 1.52 0.76 1.32 5.74 1.38 4.82 1.40 2.12 5.06 1.67 1.19 0.00 0.00 0.00 2.56 1.15 0.00 K intron_retention CG18170,CG33230,ABCB7 chr3L + chr3L_1621258_1621316 chr3L_1621257_1621258;chr3L_1621316_1621317 chr3L_1621103_1621257;chr3L_1621317_1622665 3.12 4.76 2.63 15.71 6.56 0.00 4.12 6.06 2.60 0.00 5.71 2.56 0.00 3.85 0.00 0.00 2.00 0.00 2.17 4.32 3.45 11.29 5.36 4.95 13.24 9.52 4.32 6.19 5.63 0.00 8.20 0.00 0.00 1.20 0.00 12.66 2.34 0.00 0.87 0.76 12.24 4.03 2.50 3.12 0.00 3.85 3.39 1.72 3.60 4.60 2.99 7.41 2.60 3.33 3.17 0.00 0.00 0.00 K intron_retention CG12945,I_chr3R_5615604_5615859,I_chr3R_5615807_5615858,RI_chr3R_5616467_5616560 chr3R - chr3R_5616183_5616247 chr3R_5616182_5616183;chr3R_5616247_5616248 chr3R_5616042_5616182;chr3R_5616248_5616418 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 1.92 0.00 0.00 0.00 0.00 6.67 7.32 5.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 K alternative_last_exon CG33232,I_chr3L_2484838_2495010,CG1146,noncoding_10153 chr3L + chr3L_2489010_2490979 chr3L_2489010_2489122 chr3L_2490980_2492659 chr3L_2489123_2489442 chr3L_2488983_2489009 10.34 10.00 13.64 12.86 10.00 10.64 18.18 18.18 20.24 9.43 13.64 11.43 13.64 18.92 10.17 17.54 18.42 10.81 14.00 10.34 11.11 8.57 8.43 13.56 11.43 10.34 8.20 12.96 4.76 6.67 10.71 4.94 5.98 15.29 8.89 16.22 4.88 10.34 4.55 6.50 2.41 7.69 12.12 8.75 3.17 4.44 15.38 5.66 12.87 7.69 13.79 21.88 6.82 10.71 13.73 8.70 7.79 1.69 K intron_retention Indy chr3L - chr3L_18824528_18824594 chr3L_18824527_18824528;chr3L_18824594_18824595 chr3L_18824411_18824527;chr3L_18824595_18824721 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette I_chr2L_8029734_8029787,Cka,CG7429 chr2L + chr2L_8036577_8037089 chr2L_8036577_8036836;chr2L_8036894_8037089 chr2L_8036837_8036893 chr2L_8036382_8036576;chr2L_8037090_8038517 0.40 0.00 0.00 1.20 0.86 0.00 0.00 0.58 0.32 0.87 0.00 0.81 1.83 0.00 0.63 0.00 0.00 0.90 0.87 0.35 0.00 1.41 0.39 0.53 0.00 0.82 0.56 0.74 0.75 0.67 0.00 1.15 1.05 0.00 0.90 0.67 0.00 0.65 0.40 0.00 1.06 0.00 0.00 0.78 0.88 0.00 0.00 0.90 0.49 0.00 0.00 1.06 0.00 0.00 0.00 0.86 0.00 0.00 K alternative_acceptor Axs,RI_chrX_16575605_16575790,RI_chrX_16575870_16575942 chrX - chrX_16575605_16575942 chrX_16575870_16575942 chrX_16575943_16576042;chrX_16575505_16575604 0.00 0.00 0.00 7.14 0.00 0.00 2.56 0.00 0.00 NA 0.00 0.00 11.11 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 NA 0.00 5.56 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.76 3.85 0.00 0.00 0.00 0.00 0.00 NA 3.23 0.00 4.35 0.00 NA 5.13 0.00 0.00 5.88 0.00 6.67 0.00 0.00 5.26 NA K cassette CG5174,F_chr2R_14309059_14311473,CE_chr2R_14309063_14311473 chr2R + chr2R_14309059_14311631 chr2R_14309059_14311473;chr2R_14311513_14311631 chr2R_14311474_14311512 chr2R_14308963_14309058;chr2R_14311632_14311756 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG31301,I_chr3R_11172776_11172930,RI_chr3R_11173123_11173185 chr3R + chr3R_11173128_11173198 chr3R_11173128_11173185 chr3R_11173059_11173127;chr3R_11173199_11173254 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911803_5913354 chr2R_5911803_5913333 chr2R_5911703_5911802;chr2R_5913355_5913433 41.67 NA 35.71 41.67 NA NA NA 38.89 41.67 NA NA 26.32 NA 44.44 45.45 50.00 36.36 45.45 25.00 55.00 25.00 NA 36.36 NA NA 66.67 NA NA NA NA 40.00 NA NA 50.00 NA NA NA NA NA 36.36 NA 50.00 55.56 NA NA NA NA NA 40.00 NA 36.36 NA NA NA 52.94 NA NA NA K alternative_donor CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516706_21517821;chr3L_21516330_21517821;chr3L_21516399_21517821;chr3L_21517168_21517821;chr3L_21516501_21517821;chr3L_21516918_21517821;chr3L_21516343_21517821;chr3L_21516728_21517821 chr3L_21516722_21517821 chr3L_21517822_21517920;chr3L_21516311_21516329 0.00 0.00 9.09 0.00 0.00 0.00 4.35 4.55 10.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor RpL9,I_chr2L_11003236_11003510 chr2L - chr2L_11003236_11003510 chr2L_11003239_11003510 chr2L_11003511_11003610;chr2L_11003136_11003235 100.00 99.98 100.00 100.00 100.00 100.00 99.98 100.00 99.99 100.00 100.00 99.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.98 100.00 100.00 100.00 99.98 100.00 100.00 99.98 99.97 99.97 99.96 99.96 99.96 100.00 100.00 100.00 100.00 99.98 100.00 99.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.95 99.97 100.00 99.98 100.00 100.00 100.00 100.00 99.98 100.00 99.97 K alternative_donor ben chrX + chrX_13890789_13892127;chrX_13890791_13892127;chrX_13890793_13892127;chrX_13890762_13892127;chrX_13890795_13892127;chrX_13890990_13892127;chrX_13890831_13892127;chrX_13890768_13892127;chrX_13890648_13892127 chrX_13891016_13892127 chrX_13892128_13892800;chrX_13890644_13890647 0.00 NA NA 16.67 NA NA 0.00 50.00 20.00 NA NA 50.00 0.00 0.00 0.00 20.00 NA NA 100.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 33.33 NA NA NA NA NA 50.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 16.67 0.00 NA NA NA NA 25.00 NA 0.00 0.00 K alternative_donor ras chrX + chrX_10638695_10638811 chrX_10638741_10638811 chrX_10638812_10638943;chrX_10638539_10638694 100.00 100.00 85.71 100.00 NA 88.89 100.00 93.75 95.24 100.00 NA 100.00 90.91 90.00 100.00 94.12 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 91.67 91.67 100.00 92.31 NA 88.89 100.00 90.91 88.89 100.00 91.67 100.00 100.00 92.31 100.00 100.00 93.75 NA 90.91 NA 100.00 94.44 90.91 100.00 100.00 NA NA 100.00 NA NA 100.00 K alternative_acceptor CG17002 chr2R + chr2R_2875194_2875291 chr2R_2875194_2875285 chr2R_2875175_2875193;chr2R_2875292_2875770 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 93.75 NA NA NA NA NA NA 100.00 NA NA NA 91.67 NA NA NA NA NA 100.00 100.00 NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA K jcn_only_AD NaCP60E,I_chr2R_20805053_20805170 chr2R + chr2R_20805101_20805170;chr2R_20805053_20805170 chr2R_20805005_20805170 chr2R_20805171_20805270;chr2R_20804953_20805004 0.00 NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K alternative_donor Edem1,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1798315_1798577 chrX_1798315_1798525 chrX_1798215_1798314;chrX_1798578_1798625 96.67 91.43 100.00 100.00 96.30 96.15 97.67 97.78 94.03 95.24 100.00 98.31 96.43 96.00 97.22 97.22 96.43 96.97 96.88 97.01 96.55 94.74 92.16 95.35 91.67 100.00 89.29 95.24 90.62 96.67 97.87 88.57 92.86 97.78 95.24 96.88 97.92 100.00 97.37 98.41 96.77 98.39 92.86 97.78 94.87 98.18 98.21 98.08 100.00 92.45 94.87 96.55 94.74 97.56 97.62 90.70 93.48 92.86 K jcn_only_AA Rm62,RI_chr3R_1834029_1834277 chr3R - chr3R_1834029_1834272 chr3R_1834032_1834272 chr3R_1834273_1834276;chr3R_1833929_1834028 7.49 NA NA 8.57 NA NA NA 12.50 3.85 6.67 NA NA NA NA 5.00 3.03 NA NA NA 9.09 NA NA NA NA NA NA NA 8.61 1.56 4.00 4.55 8.00 12.16 9.76 10.00 8.82 NA NA NA 8.76 6.98 6.98 NA 10.05 2.90 3.92 NA 10.83 12.20 NA NA NA 3.80 NA NA NA NA 4.44 K alternative_donor CG10277,I_chr3R_2208983_2210253,I_chr3R_2211939_2212057 chr3R + chr3R_2209240_2210702;chr3R_2208983_2210702 chr3R_2209244_2210702 chr3R_2210703_2210980;chr3R_2208883_2208982 1.28 3.33 1.33 0.67 2.50 0.00 0.78 1.18 1.66 0.00 3.12 1.38 1.49 4.29 2.63 0.82 4.35 3.85 1.28 1.56 1.54 0.63 2.33 0.00 1.61 2.41 0.00 5.88 2.21 0.87 3.06 0.00 1.27 1.98 1.00 0.84 0.65 14.29 0.66 1.17 0.00 2.40 1.67 1.01 1.06 0.75 1.49 0.61 1.57 0.00 2.78 2.33 0.00 0.00 2.56 0.00 0.00 0.00 K alternative_donor CG4699 chr3R + chr3R_11624200_11624442;chr3R_11624190_11624442;chr3R_11624127_11624442 chr3R_11624133_11624442 chr3R_11624443_11624758;chr3R_11623809_11624126 10.84 9.26 14.81 17.58 24.53 18.75 7.69 13.41 15.74 5.56 12.50 13.83 11.90 16.00 15.49 9.80 12.00 7.50 15.79 10.74 23.26 9.29 5.94 4.94 5.66 10.20 12.94 10.71 15.89 11.11 14.29 7.69 16.94 10.84 12.35 7.79 10.28 8.57 7.83 2.01 6.82 11.97 9.30 7.41 16.52 13.19 5.56 13.07 12.84 12.50 6.58 4.17 9.09 8.00 17.54 4.76 4.26 15.04 K intron_retention cmet chr2L - chr2L_11262752_11262818 chr2L_11262751_11262752;chr2L_11262818_11262819 chr2L_11262617_11262751;chr2L_11262819_11266557 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor fry,I_chr3L_9636648_9656042 chr3L - chr3L_9625271_9625332 chr3L_9625274_9625332 chr3L_9625333_9625699;chr3L_9624985_9625270 42.86 42.86 39.39 43.86 47.37 47.62 32.65 44.44 37.10 38.10 55.00 36.36 39.13 50.00 34.21 34.21 44.00 57.69 42.11 48.33 41.18 37.04 45.16 36.36 43.75 46.43 39.29 46.15 40.00 41.86 47.06 40.00 39.02 53.49 47.37 41.67 59.26 53.33 33.33 43.75 32.65 43.28 36.67 41.38 46.51 45.90 42.86 44.90 37.70 41.67 51.11 40.91 50.00 47.83 50.00 43.59 40.98 41.82 K jcn_only_AA I_chrX_5796578_5796722,CG4020,CG3726 chrX + chrX_5835305_5835381 chrX_5835305_5835358 chrX_5835198_5835304;chrX_5835382_5835509 10.00 NA NA 25.64 NA NA NA NA NA NA NA NA NA NA NA NA NA 17.86 NA NA NA NA 13.04 NA NA NA NA NA NA NA NA NA NA 13.64 NA NA 9.52 4.76 NA NA NA NA NA 15.56 NA NA 5.00 NA NA 10.00 9.09 NA NA NA NA 6.06 NA NA K intron_retention CG3004 chrX - chrX_9499739_9499794 chrX_9499738_9499739;chrX_9499794_9499795 chrX_9498140_9499738;chrX_9499795_9500104 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 3.17 0.00 1.18 2.17 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 K jcn_only_AD CG40485 chrX - chrX_22363297_22363599 chrX_22363297_22363595 chrX_22363005_22363296;chrX_22363600_22364196 5.00 8.33 3.12 NA NA 0.00 0.00 9.52 9.38 NA 0.00 2.50 NA NA 8.33 7.14 NA 5.88 7.14 2.08 NA 9.38 2.78 7.89 NA 9.09 0.00 5.00 16.00 3.12 7.32 0.00 7.84 5.00 0.00 NA 1.85 2.08 3.70 1.79 0.00 16.67 NA 6.38 2.86 0.00 6.25 11.11 2.38 12.50 7.14 6.25 2.38 0.00 6.06 8.00 4.92 15.00 K intron_retention msk,I_chr3L_8109906_8110404,E_chr3L_8113475_8114438 chr3L + chr3L_8113323_8113377 chr3L_8113322_8113323;chr3L_8113377_8113378 chr3L_8113012_8113322;chr3L_8113378_8113474 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG40178,I_chr3LHet_1194286_1226423,I_chr3LHet_1281030_1306994,RI_chr3LHet_1390877_1390952 chr3LHet - chr3LHet_1344240_1360665 chr3LHet_1352327_1360665 chr3LHet_1360666_1360681 93.50 NA NA 71.88 NA NA 71.43 89.74 85.71 NA NA NA NA 92.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.43 NA NA 100.00 NA NA NA NA NA NA NA 95.00 NA NA NA NA NA NA 96.30 NA NA NA NA NA NA NA NA NA K intron_retention MED15 chr2L + chr2L_475179_475232 chr2L_475178_475179;chr2L_475232_475233 chr2L_475036_475178;chr2L_475233_475851 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 K cassette RI_chrX_8468338_8469380,I_chrX_8468338_8477573,CG12065,I_chrX_8469524_8477579,CE_chrX_8469528_8477573 chrX + chrX_8468441_8477573 chrX_8468441_8469386;chrX_8469524_8477573 chrX_8469387_8469523 chrX_8468351_8468440;chrX_8477574_8477673 88.77 87.28 93.40 94.51 93.92 90.50 95.26 95.29 94.31 82.61 96.76 91.99 82.95 88.89 93.46 93.20 92.78 88.48 97.10 91.01 94.92 72.60 82.86 86.14 84.82 94.41 88.77 87.29 64.50 87.10 92.23 87.02 89.47 94.60 84.51 94.87 87.56 83.67 78.07 83.90 91.18 94.20 93.79 86.49 90.62 87.38 80.10 89.70 92.91 85.71 83.94 81.74 82.22 80.95 90.00 86.11 85.78 86.92 K intron_retention ps,I_chr3R_5243723_5265067,I_chr3R_5243723_5270765,I_chr3R_5245770_5265067,I_chr3R_5245770_5269732,I_chr3R_5258562_5264836,I_chr3R_5262841_5265067,RI_chr3R_5262841_5266402,I_chr3R_5265428_5266402,I_chr3R_5265428_5269732,I_chr3R_5265428_5270765,CG16777,I_chr3R_5269733_5270765 chr3R + chr3R_5258562_5269732 chr3R_5258561_5258562;chr3R_5269732_5269733 chr3R_5258462_5258561;chr3R_5269733_5269798 0.00 0.00 0.00 0.00 0.00 2.86 3.45 0.00 0.00 0.00 0.00 0.00 2.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 3.41 0.00 0.00 0.00 0.00 1.64 14.29 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA K alternative_donor ben chrX + chrX_13890789_13892127;chrX_13890791_13892127;chrX_13891016_13892127;chrX_13890793_13892127;chrX_13890762_13892127;chrX_13890795_13892127;chrX_13890990_13892127;chrX_13890768_13892127;chrX_13890648_13892127 chrX_13890831_13892127 chrX_13892128_13892800;chrX_13890644_13890647 0.00 NA NA 16.67 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA 33.33 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 33.33 0.00 NA NA NA NA 0.00 NA 0.00 0.00 N multi_cassette Pvr,I_chr2L_8226604_8228082,I_chr2L_8229001_8230124,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8226607_8230124 chr2L_8226607_8228082;chr2L_8228258_8228493;chr2L_8229012_8230124 chr2L_8228083_8228257;chr2L_8228494_8229011 chr2L_8226458_8226606;chr2L_8230125_8230224 100.00 100.00 100.00 94.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083458_8089184;chr2L_8083522_8089184;chr2L_8083588_8089184;chr2L_8083687_8089184 chr2L_8083637_8089184 chr2L_8089185_8089284;chr2L_8083444_8083457 13.45 NA 21.15 8.33 NA 16.67 13.25 13.64 11.96 45.00 NA 10.00 10.64 14.29 19.35 8.33 14.29 12.12 11.86 9.09 NA 6.67 7.69 NA NA 6.67 NA NA 25.81 NA 8.89 NA 33.33 9.21 NA 25.00 NA NA NA 30.30 13.16 14.81 20.00 22.73 NA 22.58 NA 21.13 12.66 NA NA NA NA NA 10.42 NA NA 24.44 K alternative_donor eIF4E-6,RI_chr3R_24852741_24852800,I_chr3R_24852751_24852800 chr3R - chr3R_24852751_24852809 chr3R_24852751_24852800 chr3R_24852651_24852750;chr3R_24852810_24852896 27.92 NA NA NA NA NA NA 16.67 27.27 NA NA NA NA NA NA 36.36 NA NA NA 28.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor REFI_chr2R_10491644_10491701,CG12868 chr2R - chr2R_10492608_10492671 chr2R_10492611_10492671 chr2R_10492672_10492842;chr2R_10491973_10492607 100.00 NA NA NA NA NA 94.44 100.00 100.00 NA NA 100.00 NA NA NA 93.33 NA NA NA NA NA 100.00 100.00 NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA NA NA NA NA NA NA N jcn_only_AA CG32138 chr3L + chr3L_14058259_14058688;chr3L_14058259_14059498 chr3L_14058259_14058715 chr3L_14058172_14058258;chr3L_14059499_14060368 94.39 96.58 98.48 93.56 96.76 95.58 96.54 94.03 93.76 94.39 98.43 94.93 90.60 96.50 97.89 95.09 96.00 97.08 94.47 97.19 95.06 74.79 92.31 94.35 92.13 94.35 89.41 88.89 88.89 91.73 95.36 94.87 90.76 97.05 92.04 80.35 92.08 92.23 92.07 93.45 94.39 95.14 95.10 94.95 93.33 93.87 91.98 94.40 97.38 86.93 92.40 89.59 98.82 96.40 95.97 90.12 96.24 96.34 K cassette how chr3R + chr3R_17897764_17903005 chr3R_17897764_17900173;chr3R_17900667_17903005 chr3R_17900174_17900666 chr3R_17897461_17897763;chr3R_17903006_17903074 100.00 100.00 100.00 98.44 100.00 97.14 100.00 98.55 98.90 96.00 96.00 98.65 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 97.96 100.00 100.00 96.30 100.00 100.00 100.00 86.96 100.00 100.00 94.44 100.00 100.00 96.55 97.14 97.67 100.00 97.14 98.41 95.00 100.00 100.00 100.00 95.24 100.00 96.88 100.00 98.55 97.44 100.00 100.00 100.00 100.00 97.83 100.00 100.00 97.30 K alternative_acceptor CG1427,RI_chr3R_1427548_1427635 chr3R + chr3R_1427585_1427681 chr3R_1427585_1427635 chr3R_1427482_1427584;chr3R_1427682_1427704 96.67 100.00 92.86 100.00 100.00 100.00 92.86 100.00 96.55 100.00 100.00 93.10 88.89 100.00 87.50 93.75 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 93.75 93.33 100.00 100.00 100.00 92.31 95.65 100.00 100.00 95.00 100.00 92.31 95.00 95.00 96.00 97.50 90.00 96.88 92.31 100.00 95.65 90.91 100.00 94.12 96.67 94.12 95.00 100.00 100.00 100.00 90.00 94.74 95.00 95.65 K intron_retention CG18317,RI_chr2L_1718492_1723881,I_chr2L_1718904_1718995,RI_chr2L_1718904_1724234 chr2L - chr2L_1718492_1718674 chr2L_1718491_1718492;chr2L_1718674_1718675 chr2L_1718421_1718491;chr2L_1718675_1718903 0.00 6.25 3.85 0.00 0.00 0.00 2.38 4.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 3.03 0.00 6.06 6.25 0.00 0.00 9.09 8.51 13.16 3.64 6.67 0.00 0.00 4.17 2.22 0.00 7.14 3.85 3.45 3.17 9.68 0.00 3.57 0.00 2.27 0.00 4.17 2.50 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 9.52 3.45 0.00 K intron_retention CG9911 chrX - chrX_16190518_16190892 chrX_16190517_16190518;chrX_16190892_16190893 chrX_16190343_16190517;chrX_16190893_16190916 100.00 97.83 100.00 100.00 98.18 100.00 100.00 99.02 99.26 100.00 98.44 100.00 100.00 100.00 100.00 100.00 98.39 100.00 100.00 99.19 100.00 100.00 97.37 100.00 100.00 98.39 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 98.06 100.00 97.92 100.00 100.00 100.00 97.14 99.14 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG14299 chr3R - chr3R_14580934_14581062 chr3R_14580999_14581062 chr3R_14581063_14581206;chr3R_14580821_14580933 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 95.65 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 K intron_retention sxc,I_chr2R_1203985_1205289,I_chr2R_1208121_1213310,I_chr2R_1213177_1213308 chr2R + chr2R_1194858_1194977 chr2R_1194857_1194858;chr2R_1194977_1194978 chr2R_1194848_1194857;chr2R_1194978_1195157 100.00 100.00 94.74 100.00 100.00 100.00 100.00 97.67 97.37 100.00 92.31 100.00 95.00 100.00 100.00 98.21 100.00 90.91 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 NA 100.00 97.73 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 93.75 100.00 NA NA 100.00 100.00 97.92 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 K jcn_only_AD Dad,I_chr3R_12893363_12894192,I_chr3R_12898717_12898778 chr3R + chr3R_12880085_12880773 chr3R_12880112_12880773 chr3R_12880774_12880896;chr3R_12879745_12880084 11.82 NA NA NA NA NA NA NA 13.64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention PNGase,I_chr2R_1906759_1906817,I_chr2R_1906899_1906977 chr2R + chr2R_1905861_1905911 chr2R_1905860_1905861;chr2R_1905911_1905912 chr2R_1905769_1905860;chr2R_1905912_1906758 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16106466_16106995 chr3L_16106465_16106466;chr3L_16106995_16106996 chr3L_16106332_16106465;chr3L_16106996_16107241 60.00 50.00 60.00 66.67 68.42 61.11 62.96 57.58 54.72 73.08 35.71 50.00 61.11 57.14 66.67 51.43 58.82 68.75 56.25 60.00 45.45 87.88 66.67 61.11 46.15 39.13 64.52 76.19 56.52 66.67 63.64 46.15 54.05 55.56 80.00 66.67 59.26 50.00 40.00 52.17 69.23 53.49 53.33 55.88 46.67 60.00 60.00 55.26 66.67 55.00 47.06 62.07 61.11 53.33 65.00 65.00 64.29 68.00 K intron_retention Nipsnap,RI_chrX_15965934_15967435 chrX - chrX_15967175_15967435 chrX_15967174_15967175;chrX_15967435_15967436 chrX_15967060_15967174;chrX_15967436_15967464 10.53 NA NA 0.00 NA NA 20.00 10.53 5.71 NA NA 8.33 11.11 17.65 NA 5.56 NA 46.15 8.33 15.38 NA 0.00 30.77 NA NA NA NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA 27.78 NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA 26.67 K cassette Vha100-1,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24956994_24957847 chr3R_24956994_24957407;chr3R_24957548_24957847 chr3R_24957408_24957547 chr3R_24956989_24956993;chr3R_24957848_24958024 100.00 100.00 100.00 98.92 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.37 100.00 100.00 98.48 100.00 100.00 100.00 100.00 100.00 98.00 100.00 99.15 100.00 100.00 100.00 100.00 100.00 100.00 98.68 99.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Utx chr2L - chr2L_10274106_10274164 chr2L_10274105_10274106;chr2L_10274164_10274165 chr2L_10273966_10274105;chr2L_10274165_10274868 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 10.00 NA NA NA 5.88 NA NA 0.00 30.77 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 NA NA NA K intron_retention robo chr2R - chr2R_18586590_18586700 chr2R_18586589_18586590;chr2R_18586700_18586701 chr2R_18586471_18586589;chr2R_18586701_18586881 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.05 0.00 0.00 0.00 0.00 0.00 17.65 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K alternative_donor l(2)s5379,I_chr2L_2227282_2227349,RI_chr2L_2228057_2229265,I_chr2L_2229012_2229265,I_chr2L_2229179_2229265 chr2L + chr2L_2228057_2229265;chr2L_2229012_2229265 chr2L_2227282_2229265 chr2L_2229266_2229365;chr2L_2227182_2227281 98.96 99.17 98.73 99.30 99.10 98.35 97.48 98.99 96.98 98.92 98.17 98.74 98.29 98.08 98.92 98.45 99.14 97.74 98.84 97.81 99.13 99.27 99.21 99.01 98.33 98.96 98.00 94.12 98.90 99.34 99.41 99.47 99.61 98.19 98.86 99.24 98.95 98.77 99.15 99.37 99.54 99.24 99.12 99.26 99.51 99.36 99.12 99.75 98.97 97.78 98.26 98.04 99.04 99.02 98.90 98.96 98.29 99.77 K intron_retention CG5840 chr3R + chr3R_13362421_13362492 chr3R_13362420_13362421;chr3R_13362492_13362493 chr3R_13361755_13362420;chr3R_13362493_13362636 10.53 0.00 8.33 10.53 NA 0.00 17.65 0.00 5.00 25.00 NA 17.24 12.50 0.00 3.85 40.00 6.67 4.00 NA 8.62 NA 11.43 18.33 8.00 12.50 0.00 12.00 29.79 24.32 8.33 14.29 15.15 11.76 7.41 14.81 12.00 8.33 13.79 15.79 8.93 16.13 7.89 11.76 9.68 11.54 7.69 9.09 5.56 11.76 18.42 12.07 3.33 7.89 7.50 0.00 9.52 17.07 17.24 K alternative_last_exon SelR,I_chr3R_6691367_6692250,I_chr3R_6692461_6692530,I_chr3R_6694098_6694160 chr3R - chr3R_6689548_6692250,chr3R_6689581_6692250 chr3R_6691349_6692250,chr3R_6691370_6692250 chr3R_6688210_6689547 chr3R_6690144_6691348 chr3R_6692251_6692350 5.56 5.88 8.70 9.68 5.56 5.00 14.81 9.38 7.84 5.26 9.09 9.30 12.50 5.56 7.14 9.38 5.00 4.55 8.33 11.76 6.67 4.55 7.69 5.13 5.00 5.26 5.26 5.00 10.53 4.17 3.70 5.56 3.33 11.43 8.70 12.50 2.17 3.23 2.17 2.50 5.00 6.12 10.53 4.76 3.33 4.88 3.23 8.00 6.38 4.17 5.71 5.88 6.67 2.94 7.69 2.63 4.48 6.98 K intron_retention MED1 chr3L - chr3L_21627297_21627361 chr3L_21627296_21627297;chr3L_21627361_21627362 chr3L_21626016_21627296;chr3L_21627362_21627549 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 16.67 19.05 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K alternative_acceptor I_chr2L_10264634_10264770,Mob3,RI_chr2L_10265562_10265628 chr2L + chr2L_10265562_10265628 chr2L_10265562_10265620 chr2L_10265462_10265561;chr2L_10265629_10265728 100.00 NA 100.00 100.00 NA 91.67 92.59 100.00 95.45 NA NA 100.00 100.00 100.00 100.00 96.30 100.00 100.00 94.12 100.00 90.91 NA 87.50 NA 87.50 94.12 88.89 NA NA NA 90.91 NA NA 100.00 NA 100.00 NA NA 100.00 100.00 NA 94.74 100.00 NA NA 87.50 100.00 NA 94.44 100.00 100.00 NA NA NA 100.00 100.00 100.00 NA K intron_retention pita,Rrp4 chr2R - chr2R_19437415_19437470 chr2R_19437414_19437415;chr2R_19437470_19437471 chr2R_19436480_19437414;chr2R_19437471_19438559 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 2.27 2.38 0.00 3.64 1.89 0.00 0.00 0.00 0.85 0.00 1.82 0.00 0.00 0.00 1.54 2.94 5.56 3.57 0.00 0.00 0.00 2.86 3.70 3.77 1.96 0.00 0.00 3.70 2.26 0.00 2.04 0.00 0.00 0.00 0.00 0.00 1.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 K alternative_acceptor CG34213,RI_chr2R_19854960_19855038 chr2R - chr2R_19854960_19855038 chr2R_19854986_19855038 chr2R_19855039_19855104;chr2R_19854905_19854959 90.84 NA 87.50 90.00 NA NA 91.67 100.00 100.00 NA NA NA NA NA NA NA NA NA 87.50 90.00 NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA 91.67 NA NA NA 100.00 NA 88.89 90.00 NA NA NA NA NA 87.50 NA NA 75.00 K intron_retention Ca-P60A,I_chr2R_19817636_19817680,I_chr2R_19820338_19823289 chr2R - chr2R_19819853_19819928 chr2R_19819852_19819853;chr2R_19819928_19819929 chr2R_19817681_19819852;chr2R_19819929_19820011 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG13384 chr2L + chr2L_8384896_8385002 chr2L_8384895_8384896;chr2L_8385002_8385003 chr2L_8384754_8384895;chr2L_8385003_8385091 73.70 87.50 61.11 68.42 80.95 62.50 63.89 81.08 80.49 63.64 84.62 75.68 64.29 69.57 76.47 85.37 63.16 76.19 76.00 79.17 73.33 60.00 74.07 90.91 78.57 69.23 70.73 54.17 90.00 64.29 57.14 71.43 92.31 66.67 61.11 66.67 78.26 56.25 77.78 77.27 60.00 66.67 78.57 66.67 75.00 70.00 75.00 68.00 77.78 90.91 79.17 58.33 NA 84.62 60.87 84.21 61.29 81.25 K jcn_only_AD CG8289 chrX - chrX_17528387_17528606 chrX_17528387_17528575 chrX_17527710_17528386;chrX_17528607_17529007 1.34 0.00 0.00 1.23 4.00 6.52 1.54 0.00 0.00 0.00 0.00 3.77 4.76 2.17 1.92 3.85 0.00 3.03 0.00 0.00 7.14 NA 0.00 1.41 2.44 0.00 0.00 0.00 3.70 3.57 1.75 3.70 0.00 1.61 0.00 0.00 0.00 1.61 1.64 0.00 0.00 0.00 0.00 0.00 5.41 7.14 2.70 0.00 0.00 1.27 1.89 3.51 0.00 2.38 2.13 3.23 0.00 3.45 K intron_retention del chr2L - chr2L_21148137_21148200 chr2L_21148136_21148137;chr2L_21148200_21148201 chr2L_21147904_21148136;chr2L_21148201_21148373 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24351310_24351592 chr3R_24351309_24351310;chr3R_24351592_24351593 chr3R_24351139_24351309;chr3R_24351593_24351772 5.71 4.76 5.88 10.11 4.00 3.57 13.21 7.53 8.24 5.56 12.00 5.88 5.00 8.11 2.00 6.25 0.00 9.52 8.11 6.61 0.00 0.00 7.89 8.33 3.45 5.71 0.00 NA NA 0.00 5.26 NA 14.29 12.24 NA 0.00 3.12 0.00 5.71 3.64 0.00 7.14 0.00 0.00 NA 7.41 0.00 12.50 6.48 NA 2.94 0.00 0.00 6.67 9.09 13.33 0.00 9.09 K intron_retention CG30492,C_chr2R_3522706_3523025,CG30494,RI_chr2R_3536203_3536977,I_chr2R_3543397_3543455 chr2R + chr2R_3528123_3535801 chr2R_3528122_3528123;chr2R_3535801_3535802 chr2R_3527622_3528122;chr2R_3535802_3535913 3.70 0.00 6.25 10.00 5.41 7.41 11.11 5.56 9.33 0.00 23.53 13.79 11.54 9.09 8.00 2.63 2.94 4.88 0.00 13.56 8.33 2.22 9.09 3.45 0.00 0.00 3.23 NA 16.67 0.00 3.70 0.00 16.67 14.29 0.00 13.33 0.00 4.76 12.50 6.06 0.00 7.14 2.70 0.00 0.00 3.12 0.00 6.25 8.00 3.70 7.69 NA 0.00 0.00 2.17 0.00 0.00 3.45 K intron_retention CG14722 chr3R + chr3R_7567884_7567958 chr3R_7567883_7567884;chr3R_7567958_7567959 chr3R_7567645_7567883;chr3R_7567959_7569480 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.82 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG16734,F_chr3R_5081035_5081083 chr3R + chr3R_5081738_5081793 chr3R_5081737_5081738;chr3R_5081793_5081794 chr3R_5081582_5081737;chr3R_5081794_5082249 0.00 NA NA 4.76 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA 7.14 NA NA 0.00 NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 K cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27784850_27805244;chr3R_27784850_27798223;chr3R_27784850_27801169 chr3R_27784850_27795477;chr3R_27795508_27798223,chr3R_27795508_27801169,chr3R_27795508_27805244 chr3R_27795478_27795507 chr3R_27784757_27784849;chr3R_27805245_27805341 30.77 NA NA 37.50 36.36 NA 25.00 47.06 20.59 NA NA 38.10 23.08 NA 26.67 29.17 NA NA 23.08 33.33 NA NA NA NA NA 26.67 28.57 NA NA NA 33.33 NA 25.00 40.00 NA NA 25.00 NA NA 35.71 NA 23.08 30.77 NA NA NA NA 36.36 29.17 33.33 46.15 NA NA NA 35.71 NA NA 30.77 K jcn_only_AA eIF2B-delta chr2R + chr2R_19274146_19274464;chr2R_19274146_19274529 chr2R_19274146_19274312 chr2R_19274016_19274145 12.50 2.86 10.81 18.57 NA 16.13 8.89 12.86 10.38 NA 29.41 7.45 52.94 15.91 10.81 13.11 11.76 6.06 19.61 4.23 20.69 11.48 11.11 11.36 28.57 11.11 17.78 14.89 14.29 8.00 11.36 NA NA 18.31 23.08 6.67 12.50 3.12 2.17 17.50 30.00 6.06 28.21 11.76 NA 10.87 7.81 12.00 19.15 13.73 16.67 12.50 14.29 12.00 23.40 20.69 15.00 0.00 K intron_retention CG30389,I_chr2R_17044803_17047935 chr2R - chr2R_17038429_17038487 chr2R_17038428_17038429;chr2R_17038487_17038488 chr2R_17037770_17038428;chr2R_17038488_17038589 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 1.15 0.00 0.00 4.39 12.27 0.84 0.00 0.00 0.00 0.95 0.47 0.00 0.49 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG33087,EI_chr2R_4062337_4074409 chr2R + chr2R_4112449_4112505 chr2R_4112448_4112449;chr2R_4112505_4112506 chr2R_4111116_4112448;chr2R_4112506_4112632 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_150069_150307;chr4_150069_150378;chr4_150069_150353;chr4_150069_150295;chr4_150069_150205 chr4_150069_150180 chr4_149969_150068;chr4_150379_150379 15.48 NA 0.00 20.00 0.00 33.33 30.00 11.76 25.00 NA 0.00 20.00 20.00 40.00 0.00 18.18 14.29 0.00 20.00 22.22 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 13.33 NA NA NA NA NA NA NA 16.67 0.00 NA NA NA NA NA 20.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention ubl chr2R - chr2R_2697845_2697903 chr2R_2697844_2697845;chr2R_2697903_2697904 chr2R_2697706_2697844;chr2R_2697904_2698066 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 1.98 0.00 0.00 0.00 0.00 0.66 0.00 NA 0.00 0.00 0.00 0.00 3.75 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG13252 chr3L + chr3L_20723911_20730238 chr3L_20723971_20730238 chr3L_20730239_20730570;chr3L_20723692_20723910 100.00 NA 100.00 NA NA NA NA 100.00 100.00 NA NA NA NA 100.00 NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention su(f),I_chrXHet_77570_78035 chrXHet + chrXHet_77736_78035 chrXHet_77735_77736;chrXHet_78035_78036 chrXHet_77432_77735;chrXHet_78036_78135 7.50 6.67 5.94 11.43 8.57 6.06 4.95 10.74 11.89 6.25 4.48 7.79 9.38 9.84 8.00 6.74 8.20 11.11 10.47 11.43 6.25 18.60 7.34 5.88 1.43 4.76 8.70 5.13 10.81 7.25 8.97 8.00 5.00 8.18 8.57 5.56 5.62 4.48 6.25 11.39 5.56 7.48 10.17 6.33 8.45 7.89 8.33 2.99 9.23 4.44 6.96 10.71 7.50 7.41 6.52 7.59 6.48 10.00 K intron_retention Spp,Ets21C,rempA chr2L - chr2L_544267_544332 chr2L_544266_544267;chr2L_544332_544333 chr2L_543427_544266;chr2L_544333_544635 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.63 0.00 0.00 0.00 0.35 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD RnrL,I_chr2L_10327455_10327630 chr2L - chr2L_10327455_10327686 chr2L_10327455_10327630 chr2L_10327355_10327454;chr2L_10327687_10327730 1.35 0.47 0.48 1.57 2.80 1.68 0.60 0.23 1.43 2.86 0.81 1.02 1.48 1.09 0.43 1.17 1.34 0.00 0.87 1.35 1.85 0.00 1.45 1.50 2.96 0.91 1.84 3.85 9.09 1.65 6.54 1.97 1.51 1.11 0.53 4.41 1.11 0.00 2.20 1.82 1.52 1.07 0.97 1.25 1.29 3.40 0.99 1.54 2.67 1.33 1.79 1.27 4.88 1.35 0.40 1.28 3.57 2.27 K intron_retention CG5674 chr2L + chr2L_17969519_17971871 chr2L_17969518_17969519;chr2L_17971871_17971872 chr2L_17969372_17969518;chr2L_17971872_17972003 15.00 NA NA 35.71 NA NA NA NA 12.00 NA NA 23.08 NA NA NA NA NA NA 33.33 10.53 NA 17.24 9.09 11.11 NA NA 5.56 23.53 33.33 15.00 5.88 23.08 16.13 20.00 5.26 11.11 12.50 6.25 5.26 12.50 30.77 15.00 18.75 9.09 7.69 19.05 NA 16.22 20.00 13.33 NA NA NA NA NA 10.53 NA 16.67 K jcn_only_AD CG33298 chr2L + chr2L_9495657_9496144 chr2L_9495712_9496144 chr2L_9496145_9496255;chr2L_9495488_9495656 39.73 NA NA 36.36 NA NA 60.00 44.44 39.02 NA NA 31.03 NA 40.00 NA 55.26 NA NA 31.82 26.92 NA NA NA NA NA 30.00 NA NA NA NA NA NA NA 39.47 NA NA NA NA NA NA NA 52.27 45.83 NA NA NA NA NA 48.48 NA NA NA NA NA NA NA NA NA K intron_retention CG5168 chr2L + chr2L_10424484_10424543 chr2L_10424483_10424484;chr2L_10424543_10424544 chr2L_10424371_10424483;chr2L_10424544_10424670 0.00 0.00 0.61 0.00 0.00 0.00 0.25 0.20 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.33 0.00 0.00 0.66 0.99 0.40 0.72 0.00 0.00 0.00 0.90 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.18 0.41 0.00 0.29 0.00 0.00 0.00 0.39 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Kdm4B,seq chr2R - chr2R_9073661_9073777 chr2R_9073660_9073661;chr2R_9073777_9073778 chr2R_9073650_9073660;chr2R_9073778_9073902 0.00 4.00 0.00 10.00 0.00 0.00 4.17 9.09 3.51 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.03 0.00 NA 3.85 5.56 NA 0.00 0.00 0.00 0.00 6.25 0.00 NA 0.00 0.00 0.00 0.00 NA 5.56 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 K alternative_donor RhoGAPp190,I_chrX_17544272_17544863,I_chrX_17546225_17546531 chrX - chrX_17544272_17546531;chrX_17544272_17546421 chrX_17544272_17546123 chrX_17544172_17544271;chrX_17546532_17546535 34.43 34.78 31.03 36.00 22.22 34.48 30.91 44.44 33.33 10.53 25.93 38.71 31.03 30.77 31.58 34.38 33.33 40.74 59.09 42.62 33.33 25.00 54.55 87.50 55.56 37.50 57.14 12.50 20.00 33.33 29.41 50.00 20.51 28.85 37.50 56.25 50.00 58.33 66.67 24.44 30.00 32.79 36.00 34.62 22.22 30.77 75.00 14.29 32.73 50.00 56.25 53.33 30.00 100.00 40.00 57.14 NA 15.79 K alternative_donor I_chr2R_17169674_17170491,CG10069,I_chr2R_17169897_17170495,I_chr2R_17170432_17170491,I_chr2R_17171765_17171886 chr2R + chr2R_17170432_17170491;chr2R_17169885_17170491;chr2R_17170070_17170491;chr2R_17169897_17170491 chr2R_17170336_17170491 chr2R_17170492_17170591;chr2R_17169869_17169884 5.56 8.33 6.06 11.90 4.55 6.25 13.51 11.36 9.80 3.33 5.00 3.85 7.41 3.85 6.67 14.29 3.85 4.35 9.52 7.81 8.70 9.43 5.56 5.71 4.17 6.25 6.06 5.00 10.26 3.45 8.33 4.17 5.00 9.26 4.17 4.55 4.44 0.00 2.22 7.04 10.34 7.14 4.35 7.69 8.33 3.45 0.00 5.00 10.91 4.76 0.00 0.00 4.55 0.00 11.76 0.00 4.35 7.69 K jcn_only_AD chrw,RI_chr2R_19408490_19409650,RI_chr2R_19408490_19410750 chr2R - chr2R_19409716_19410750 chr2R_19409716_19409778 chr2R_19409651_19409715;chr2R_19410751_19410850 4.04 4.65 2.08 0.00 7.69 2.56 5.77 1.75 3.61 0.00 NA 4.55 6.45 0.00 4.65 3.85 4.17 5.88 3.33 4.21 2.78 3.03 3.23 5.00 8.33 5.41 0.00 0.00 0.00 9.76 1.92 0.00 0.00 4.08 3.23 0.00 7.69 5.00 4.17 4.94 2.63 4.92 5.56 7.69 6.12 0.00 0.00 4.00 5.13 31.25 4.92 3.03 5.71 3.85 1.92 5.56 5.66 2.38 K intron_retention l(2)k05819,I_chr2L_4396173_4396266 chr2L + chr2L_4395951_4396009 chr2L_4395950_4395951;chr2L_4396009_4396010 chr2L_4395236_4395950;chr2L_4396010_4396127 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.90 0.00 0.00 1.00 0.00 0.00 1.89 1.48 0.00 2.27 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 2.07 0.00 0.00 1.87 0.00 0.00 0.00 0.00 1.43 2.06 1.81 2.06 0.00 1.32 0.00 1.65 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.63 0.00 0.00 0.00 K jcn_only_AD CG10194,RI_chr2L_19489213_19489295 chr2L - chr2L_19489213_19489299 chr2L_19489213_19489295 chr2L_19489113_19489212;chr2L_19489300_19489395 10.00 NA NA 18.75 NA NA 3.57 NA 10.00 NA 9.52 3.57 NA NA 15.00 10.00 NA NA NA 8.70 NA 14.29 10.71 3.70 NA 8.00 10.00 NA NA NA 25.00 NA NA 9.52 NA NA 3.12 19.05 8.70 15.38 NA 12.50 NA 7.41 NA 5.00 16.00 NA 8.57 7.41 22.73 NA NA 13.64 NA 9.09 13.16 NA K jcn_only_AD dorsal,RI_chr2L_17438018_17439189,FI_chr2L_17449369_17450215,noncoding_3500,RI_chr2L_17450002_17450219 chr2L - chr2L_17449369_17450325;chr2L_17449369_17449875;chr2L_17449369_17450219;chr2L_17449369_17450310 chr2L_17449369_17450215 chr2L_17449296_17449368;chr2L_17450326_17450359 1.57 2.00 0.00 0.97 0.00 0.00 1.06 2.61 0.73 2.27 0.00 0.68 8.93 1.54 3.75 1.21 0.00 1.82 2.60 1.31 0.00 3.03 5.00 3.70 0.00 10.00 2.08 0.00 2.68 0.00 0.75 2.08 4.17 0.74 3.00 5.41 0.00 0.00 2.27 2.19 3.31 1.57 2.17 0.00 3.17 2.08 1.43 2.82 1.34 0.00 1.11 2.82 0.00 3.45 3.12 1.49 0.00 2.08 K intron_retention CG6454,I_chr3R_20175958_20178905 chr3R + chr3R_20175958_20177774 chr3R_20175957_20175958;chr3R_20177774_20177775 chr3R_20175858_20175957;chr3R_20177775_20178073 2.62 3.85 0.00 6.67 0.00 8.33 8.00 4.44 9.09 5.56 3.03 11.11 0.00 0.00 6.25 0.00 0.00 0.00 6.45 2.60 7.41 7.69 2.27 0.00 0.00 0.00 8.33 10.71 0.00 7.14 0.00 0.00 5.33 1.92 0.00 3.45 0.00 3.33 0.00 3.57 5.71 7.27 0.00 1.89 0.00 6.25 0.00 3.12 4.00 3.85 6.98 0.00 0.00 NA 0.00 0.00 0.00 2.63 K intron_retention Psi,RI_chr2R_12752536_12752596,I_chr2R_12753387_12753659 chr2R - chr2R_12752542_12752596 chr2R_12752541_12752542;chr2R_12752596_12752597 chr2R_12752074_12752541;chr2R_12752597_12752696 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 13.64 NA NA NA NA NA NA NA NA NA 0.00 7.69 NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA 12.50 NA NA 6.06 NA 8.33 NA 13.33 NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA K intron_retention dlg1,I_chrX_11298230_11299306 chrX + chrX_11288280_11289272 chrX_11288279_11288280;chrX_11289272_11289273 chrX_11288271_11288279;chrX_11289273_11289824 6.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K intron_retention rtGEF,I_chr2L_20359856_20360012 chr2L + chr2L_20360813_20361968 chr2L_20360812_20360813;chr2L_20361968_20361969 chr2L_20360564_20360812;chr2L_20361969_20361994 73.33 NA NA 96.00 NA NA 92.86 NA 69.23 NA NA 52.63 NA NA NA NA NA NA NA 26.67 NA 57.14 63.64 NA NA NA NA 87.50 66.67 77.78 NA NA 68.18 NA NA NA NA NA NA 81.82 100.00 80.00 NA NA 70.00 69.23 NA 58.82 NA 100.00 81.82 NA NA NA NA 77.78 NA 73.33 K jcn_only_AD CG42507,Trl,EI_chr3L_14750431_14750893,I_chr3L_14750431_14750985,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14750431_14750762;chr3L_14750431_14751007;chr3L_14750431_14750893;chr3L_14750431_14750583 chr3L_14750431_14750941 chr3L_14750331_14750430;chr3L_14751008_14751008 72.53 85.29 65.00 68.00 66.67 69.23 66.67 50.00 65.82 85.19 66.67 68.18 58.54 68.75 66.67 80.70 66.67 61.11 60.53 73.03 59.62 76.74 85.71 77.94 86.49 53.85 89.13 NA 72.34 73.91 86.49 64.52 74.47 60.29 88.89 75.51 90.24 93.55 87.18 76.84 64.00 68.42 50.00 77.78 61.36 71.76 94.29 64.04 68.57 72.73 82.43 84.09 81.82 82.00 68.89 81.82 87.50 73.08 K jcn_only_AD Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8107426_8107747 chr2L_8107439_8107747 chr2L_8107748_8107847;chr2L_8107326_8107425 100.00 100.00 100.00 100.00 99.82 99.84 99.91 100.00 99.89 99.80 100.00 99.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.86 99.82 100.00 100.00 100.00 100.00 100.00 99.72 99.86 100.00 99.80 99.83 100.00 100.00 99.91 100.00 100.00 100.00 100.00 99.83 100.00 100.00 99.93 100.00 100.00 100.00 99.83 100.00 100.00 99.92 99.70 99.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CCS,I_chr2R_6009946_6010014 chr2R - chr2R_6009946_6010014;chr2R_6009964_6010014 chr2R_6009951_6010014 chr2R_6010015_6010040;chr2R_6009884_6009945 0.00 0.00 14.29 15.38 NA 0.00 0.00 0.00 0.00 0.00 NA 13.33 NA 10.00 NA 16.67 0.00 0.00 0.00 4.76 0.00 20.00 8.33 14.29 0.00 0.00 21.43 15.00 28.57 NA 9.09 14.29 0.00 0.00 0.00 25.00 7.14 12.50 23.08 0.00 NA 0.00 NA 16.67 0.00 0.00 0.00 0.00 0.00 8.33 9.09 0.00 0.00 0.00 18.18 0.00 0.00 0.00 K jcn_only_AA CG17471,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1216219_1216285 chr4_1216223_1216285 chr4_1216286_1216354;chr4_1216212_1216218 97.53 92.31 100.00 96.39 97.06 94.12 99.19 96.82 97.81 NA 100.00 97.64 96.15 97.30 96.92 98.14 98.51 100.00 100.00 96.40 93.02 95.45 97.56 100.00 100.00 97.87 100.00 NA NA 87.50 92.45 95.83 90.00 98.63 100.00 88.46 NA NA 96.30 97.83 100.00 98.46 96.26 95.12 NA 95.74 100.00 97.06 96.82 100.00 100.00 97.56 NA 97.50 98.86 97.67 95.83 92.31 K cassette Top1 chrX + chrX_15219559_15219848 chrX_15219559_15219619;chrX_15219772_15219848 chrX_15219620_15219771 chrX_15219308_15219558;chrX_15219849_15219992 100.00 100.00 100.00 99.05 100.00 100.00 100.00 100.00 99.36 100.00 100.00 100.00 100.00 100.00 100.00 99.08 100.00 100.00 100.00 100.00 100.00 99.09 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.81 100.00 99.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor B4,I_chr2L_13513474_13549131,I_chr2L_13547133_13549131,I_chr2L_13547162_13547692,I_chr2L_13547304_13549131 chr2L - chr2L_13547304_13549131;chr2L_13547162_13549131 chr2L_13547133_13549131 chr2L_13549132_13549231;chr2L_13547062_13547132 5.13 9.09 18.75 5.56 8.33 8.33 4.76 0.00 4.35 0.00 0.00 9.09 11.11 0.00 10.00 0.00 9.09 0.00 6.25 3.85 10.00 0.00 4.55 9.09 0.00 9.09 5.26 5.88 6.25 4.35 5.88 0.00 8.70 5.56 0.00 0.00 5.00 7.69 5.00 0.00 6.25 0.00 0.00 0.00 6.25 4.55 17.65 4.76 0.00 5.88 0.00 0.00 NA 10.00 5.56 14.29 7.14 0.00 K alternative_donor None chrU + chrU_1182323_1183262;chrU_1179335_1183262 chrU_1178980_1183262 1.52 0.80 0.69 1.52 1.10 3.94 1.71 0.00 1.26 1.67 1.41 1.14 0.72 2.07 2.04 1.66 2.78 1.01 2.22 2.34 1.09 1.64 2.13 3.17 0.00 1.79 0.00 0.00 1.16 1.11 0.48 4.23 14.49 2.76 5.88 1.08 1.05 1.22 0.95 0.50 2.74 2.15 0.00 0.51 1.43 0.00 0.81 0.79 1.92 4.65 2.04 3.51 2.50 3.53 0.56 2.68 2.67 4.08 K cassette CG18659,E_chr2R_5011363_5019110,RI_chr2R_5013572_5014531,I_chr2R_5016147_5016997 chr2R - chr2R_5011651_5013055;chr2R_5011645_5013055 chr2R_5011645_5012248,chr2R_5011651_5012248;chr2R_5012726_5013055 chr2R_5012249_5012725 chr2R_5011194_5011644;chr2R_5013056_5013571 91.46 93.08 93.10 91.51 92.41 93.83 91.51 88.24 92.18 90.91 88.52 93.65 89.09 86.76 92.55 93.85 88.57 89.19 92.65 89.69 90.79 79.40 91.58 91.38 94.57 97.14 89.63 83.04 88.69 94.85 94.38 94.21 95.21 94.17 90.00 96.21 87.15 88.97 91.46 91.36 93.84 90.78 88.33 88.19 93.91 92.35 86.31 95.68 89.57 93.33 85.80 90.36 86.73 92.86 92.55 87.22 89.93 92.86 K alternative_donor CG10365,I_chr3R_19549381_19554106,I_chr3R_19554176_19554388 chr3R + chr3R_19549452_19554388;chr3R_19549381_19554388 chr3R_19549425_19554388 chr3R_19554389_19554488;chr3R_19549281_19549380 4.39 9.09 0.00 3.23 6.25 0.00 6.06 4.35 4.65 0.00 6.25 9.62 6.67 5.56 0.00 3.12 5.26 0.00 10.34 10.00 0.00 NA 5.71 3.57 5.56 0.00 4.55 NA 12.50 3.33 4.35 12.50 3.33 11.11 0.00 NA 4.35 4.35 3.57 4.44 3.33 6.25 11.11 8.33 7.41 5.26 0.00 3.85 6.98 10.53 0.00 0.00 NA 0.00 3.57 0.00 NA 5.88 K alternative_donor RI_chr3L_17480321_17481164,Oatp74D,chr3L_17480319_17480976.0,I_chr3L_17480594_17481164,I_chr3L_17500359_17500724 chr3L + chr3L_17480321_17481164;chr3L_17480290_17481164;chr3L_17480594_17481164 chr3L_17480301_17481164 chr3L_17481165_17481264;chr3L_17480274_17480289 12.50 NA NA 16.67 NA NA 7.69 20.00 21.74 NA NA 8.33 NA NA NA 0.00 NA 10.00 NA 30.00 NA 9.09 14.29 NA 20.00 NA 0.00 33.33 0.00 NA NA NA 10.00 33.33 NA NA 11.11 NA 0.00 22.22 NA 28.57 NA 12.50 NA 25.00 NA 18.18 15.38 NA NA NA NA NA 0.00 0.00 NA 0.00 K alternative_acceptor egr,I_chr2R_5970832_5970930,I_chr2R_5970999_5971058 chr2R + chr2R_5970832_5970908;chr2R_5970832_5970926 chr2R_5970832_5970930 chr2R_5970767_5970831;chr2R_5970931_5970998 0.47 0.66 0.85 0.76 0.88 0.00 0.00 0.00 0.42 0.00 0.96 0.53 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.46 0.91 0.62 0.50 0.45 0.00 0.93 1.11 0.00 0.92 0.89 1.71 1.27 1.11 0.62 0.00 0.85 0.54 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.49 0.00 1.03 0.48 0.49 0.54 0.89 0.00 0.00 0.68 0.65 0.31 0.00 K alternative_donor Ucp4A chrX + chrX_17739432_17739522;chrX_17739458_17739522;chrX_17739454_17739522 chrX_17739394_17739522 chrX_17739523_17739558;chrX_17739094_17739393 36.36 45.45 54.55 NA NA NA 20.00 55.56 27.27 NA NA 35.71 NA NA 55.56 77.78 NA 50.00 57.14 18.18 NA NA 26.32 42.86 60.00 NA 30.77 44.44 NA 42.86 61.90 25.00 36.36 30.77 40.00 60.00 36.36 53.85 31.25 37.50 14.29 43.75 16.67 16.67 30.00 30.77 33.33 36.36 33.33 40.00 31.58 44.44 28.57 27.27 44.44 50.00 33.33 NA K intron_retention Hr78,I_chr3L_21490089_21490390 chr3L - chr3L_21489842_21489919 chr3L_21489841_21489842;chr3L_21489919_21489920 chr3L_21489527_21489841;chr3L_21489920_21489977 4.76 NA 5.26 4.35 5.88 NA 16.00 8.00 7.14 NA NA 9.68 NA 0.00 NA 0.00 NA 20.00 0.00 8.33 11.11 NA 15.15 3.23 17.65 14.29 3.85 0.00 57.89 0.00 0.00 0.00 NA 11.11 0.00 14.29 9.09 9.09 2.56 7.41 NA 8.33 0.00 0.00 NA 0.00 3.70 0.00 10.00 NA 0.00 NA 0.00 0.00 10.53 4.76 0.00 NA K alternative_donor CG16833,I_chr2L_10994022_10994325,I_chr2L_10994919_10997334 chr2L + chr2L_10989871_10990095 chr2L_10989875_10990095 chr2L_10990096_10990783;chr2L_10989656_10989870 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG12177 chrX - chrX_13572787_13572887 chrX_13572786_13572787;chrX_13572887_13572888 chrX_13571932_13572786;chrX_13572888_13573334 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.26 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG13822 chr3R + chr3R_19503887_19503959 chr3R_19503886_19503887;chr3R_19503959_19503960 chr3R_19503578_19503886;chr3R_19503960_19504152 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 2.44 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 1.09 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.75 0.00 K cassette unc-13,RI_chr4_892852_895828,RI_chr4_894198_895828,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_892852_895828 chr4_892852_893839;chr4_894198_895828 chr4_893840_894197 chr4_892753_892851;chr4_895829_895928 94.87 97.14 97.44 77.61 96.55 93.02 97.87 90.22 92.93 96.55 96.00 95.24 91.43 91.49 91.67 98.39 94.44 97.06 93.33 98.88 96.55 93.66 92.59 100.00 92.31 88.24 95.59 96.43 72.55 89.36 94.32 94.87 91.30 98.77 91.11 94.03 93.33 95.00 96.88 96.67 93.44 95.18 95.00 92.77 97.44 96.72 94.74 95.89 98.65 91.11 96.49 100.00 85.00 100.00 93.88 85.71 95.56 91.07 K alternative_acceptor Taf6 chr3L + chr3L_19594248_19594309 chr3L_19594248_19594296 chr3L_19594013_19594247;chr3L_19594310_19594484 74.34 55.00 80.00 85.00 90.00 70.00 86.67 76.47 72.00 90.00 90.00 75.86 87.50 NA 76.92 71.43 55.56 75.00 71.43 75.00 76.92 48.48 75.76 70.83 77.78 91.67 66.67 73.68 80.00 76.47 88.89 73.08 73.08 73.33 66.67 100.00 77.42 68.18 68.97 80.56 80.95 68.97 66.67 80.00 47.06 68.00 60.61 93.33 83.87 71.43 63.33 90.91 66.67 70.37 92.86 67.86 70.27 71.43 N alternative_acceptor CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789740_9789790;chr2L_9789694_9789790;chr2L_9789718_9789790;chr2L_9789751_9789790;chr2L_9789598_9789790 chr2L_9789733_9789790 chr2L_9789791_9789832;chr2L_9789594_9789597 57.14 53.33 57.14 58.14 57.14 65.22 61.54 64.41 56.16 68.42 56.25 66.67 59.09 54.84 50.00 63.33 58.33 58.33 65.52 56.92 60.00 62.07 52.94 55.56 48.39 55.56 50.98 43.48 51.72 57.69 62.22 52.38 63.33 52.94 57.69 27.59 57.14 54.17 62.16 59.02 67.86 64.15 50.00 60.61 55.00 63.64 48.00 57.45 52.38 56.52 60.53 65.52 42.11 50.00 56.76 63.64 40.91 64.00 K intron_retention RpL13,I_chr2L_9967475_9967616,E_chr2L_9967706_9968364 chr2L + chr2L_9967359_9967616 chr2L_9967358_9967359;chr2L_9967616_9967617 chr2L_9967293_9967358;chr2L_9967617_9967705 0.90 0.90 0.34 0.32 0.19 0.22 1.75 0.16 0.31 1.04 0.23 1.13 0.00 0.56 0.19 0.73 0.00 0.39 0.27 0.37 0.54 5.14 2.90 1.73 1.11 0.17 12.77 2.49 2.65 2.19 0.44 1.29 1.20 0.34 2.63 1.66 4.67 2.56 5.88 0.66 1.88 0.30 0.00 0.36 0.66 2.01 2.83 1.09 0.63 4.24 4.11 3.75 0.41 13.79 0.00 2.80 1.33 0.75 K intron_retention CG3689,I_chr3L_9405436_9406302 chr3L + chr3L_9405083_9406302 chr3L_9405082_9405083;chr3L_9406302_9406303 chr3L_9404917_9405082;chr3L_9406303_9406402 7.44 7.89 5.33 5.00 7.79 4.29 13.85 8.94 9.63 4.84 6.52 11.19 12.90 7.35 6.02 12.12 8.47 5.63 7.78 10.49 10.81 6.58 9.88 5.93 7.14 8.82 7.55 8.33 5.26 3.85 6.74 3.31 3.10 8.27 7.79 7.69 15.22 7.14 6.84 4.58 2.34 10.00 10.94 10.14 6.20 6.36 7.44 3.00 8.27 4.81 4.35 7.29 8.97 7.96 4.40 9.60 7.69 2.87 K intron_retention CG11071 chrX - chrX_13750793_13751014 chrX_13750792_13750793;chrX_13751014_13751015 chrX_13749268_13750792;chrX_13751015_13751252 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 1.18 0.00 0.00 1.31 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 1.22 0.00 0.00 0.00 0.00 0.00 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.17 3.92 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention shi,RI_chrX_15786633_15786860,RE_chrX_15793108_15795563 chrX + chrX_15786451_15786860 chrX_15786450_15786451;chrX_15786860_15786861 chrX_15786428_15786450;chrX_15786861_15786960 69.57 NA 72.73 60.87 NA NA 60.87 74.07 68.00 NA NA 77.78 58.33 75.00 66.67 68.97 90.00 77.78 62.50 75.00 NA NA 50.00 NA NA 66.67 NA NA NA NA 73.33 NA 87.50 67.86 72.73 NA NA NA NA 88.89 NA 69.57 60.00 NA NA NA NA NA 73.91 NA NA NA NA NA 46.15 NA NA NA K multi_cassette Ect4,I_chr3L_8075556_8086158,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8098397_8101385 chr3L_8098397_8098539;chr3L_8098758_8099115;chr3L_8100050_8101385 chr3L_8098540_8098757;chr3L_8099116_8100049 chr3L_8098297_8098396;chr3L_8101386_8101485 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 97.37 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.55 95.45 100.00 100.00 100.00 K intron_retention msk,I_chr3L_8109906_8110404 chr3L + chr3L_8111793_8111844 chr3L_8111792_8111793;chr3L_8111844_8111845 chr3L_8111647_8111792;chr3L_8111845_8112642 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 1.49 0.00 0.00 0.00 0.00 0.00 0.44 0.00 1.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG17734,I_chr3R_7068286_7069503 chr3R - chr3R_7068286_7069503 chr3R_7068736_7069503 chr3R_7069504_7069603;chr3R_7068186_7068285 98.91 98.88 100.00 97.00 100.00 98.68 97.85 99.05 100.00 97.06 98.36 98.57 97.87 100.00 98.89 98.63 98.04 100.00 100.00 100.00 100.00 98.85 99.05 99.20 98.57 93.42 98.91 98.55 98.78 98.84 98.65 97.92 100.00 99.11 98.53 96.43 99.14 98.91 100.00 98.28 94.66 99.32 98.36 98.80 99.33 99.42 100.00 100.00 100.00 97.44 100.00 98.46 100.00 100.00 98.89 99.14 99.21 99.38 K alternative_acceptor eIF5,RI_chrX_15883163_15883424,I_chrX_15883297_15883424,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15883360_15883424;chrX_15883163_15883424;chrX_15883143_15883424 chrX_15883302_15883424 chrX_15883425_15883509;chrX_15883079_15883142 69.86 61.54 75.00 76.19 58.82 65.22 83.64 74.63 70.49 50.00 57.14 73.91 63.33 70.27 53.33 64.20 70.37 76.19 55.81 64.44 58.82 70.37 55.00 53.33 NA 58.33 63.16 69.57 73.68 81.82 70.15 52.94 75.68 85.71 79.31 78.26 64.71 60.00 76.92 81.40 79.31 75.00 67.65 73.53 57.14 83.72 62.96 75.76 76.14 64.00 75.76 33.33 46.15 52.94 65.91 77.78 53.12 84.09 K alternative_last_exon CG17233,I_chr3L_20232803_20232962,RI_chr3L_20232898_20232962 chr3L - chr3L_20232803_20232962;chr3L_20231011_20232962 chr3L_20232645_20232962,chr3L_20232711_20232962,chr3L_20232648_20232962,chr3L_20232714_20232962 chr3L_20229120_20231010 chr3L_20231838_20232644 chr3L_20232963_20233016 97.96 96.30 97.87 98.21 97.37 100.00 97.73 96.49 97.85 96.67 100.00 97.56 93.55 97.06 100.00 97.62 100.00 100.00 100.00 98.20 100.00 94.12 98.85 97.47 97.96 100.00 95.24 92.86 93.62 98.21 100.00 97.62 97.10 96.88 97.96 98.15 99.08 98.51 98.94 96.25 97.50 97.80 100.00 95.92 98.44 96.15 98.25 97.18 98.68 98.36 98.68 97.50 98.21 98.04 96.15 98.04 98.18 97.06 K intron_retention CG14967 chr3L - chr3L_3218489_3218544 chr3L_3218488_3218489;chr3L_3218544_3218545 chr3L_3217946_3218488;chr3L_3218545_3218671 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA NA K intron_retention fws,CG6453 chr2L - chr2L_17479114_17479171 chr2L_17479113_17479114;chr2L_17479171_17479172 chr2L_17478444_17479113;chr2L_17479172_17480242 4.17 3.57 8.16 6.10 8.89 0.00 3.61 3.57 2.94 2.38 4.17 2.92 4.17 4.00 1.82 0.00 0.00 3.92 0.00 2.99 5.77 4.17 8.33 2.90 0.00 5.77 10.29 8.33 16.33 2.04 8.33 4.44 8.05 5.06 0.00 5.26 2.44 0.00 2.15 4.82 10.61 3.70 2.50 0.00 5.00 7.46 4.55 4.17 6.12 5.41 3.85 5.13 5.00 0.00 5.08 2.56 2.65 6.25 K jcn_only_AA Mat89Ba,RI_chr3R_12096350_12096418 chr3R - chr3R_12096350_12096418 chr3R_12096363_12096418 chr3R_12096419_12096518;chr3R_12096250_12096349 97.44 95.65 100.00 97.92 100.00 NA 100.00 96.72 97.73 NA 91.67 95.35 97.22 100.00 100.00 94.44 100.00 100.00 91.89 97.62 NA 93.55 96.00 95.35 100.00 100.00 100.00 97.62 90.91 96.15 86.67 NA NA 98.36 92.59 96.30 100.00 NA NA 97.14 NA 94.92 100.00 94.29 NA NA 100.00 97.44 98.33 100.00 97.22 90.91 95.24 NA 100.00 NA 100.00 93.10 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2813977;chr2R_2814097_2814174;chr2R_2814327_2814894;chr2R_2815657_2816013;chr2R_2816342_2817753 chr2R_2813978_2814096;chr2R_2814175_2814326;chr2R_2814895_2815656;chr2R_2816014_2816341 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG31689,I_chr2L_2730373_2736310,I_chr2L_2736431_2737036 chr2L + chr2L_2736431_2737036 chr2L_2736431_2737031 chr2L_2736331_2736430;chr2L_2737037_2737136 100.00 95.45 95.00 100.00 93.33 93.75 100.00 100.00 100.00 NA 100.00 97.06 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.18 100.00 100.00 97.87 95.24 94.74 95.65 93.33 91.67 90.00 96.67 100.00 95.83 96.55 100.00 97.44 97.14 100.00 97.78 87.50 100.00 100.00 100.00 89.47 100.00 97.50 100.00 100.00 100.00 100.00 100.00 96.00 96.15 100.00 100.00 K intron_retention CG7685 chr3R + chr3R_14230769_14230821 chr3R_14230768_14230769;chr3R_14230821_14230822 chr3R_14230748_14230768;chr3R_14230822_14230881 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 92.86 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 96.67 100.00 K intron_retention Cap-G chr2R + chr2R_9021312_9021387 chr2R_9021311_9021312;chr2R_9021387_9021388 chr2R_9021135_9021311;chr2R_9021388_9022202 0.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 K intron_retention eIF-4a,I_chr2L_5981836_5984010,I_chr2L_5985221_5985289 chr2L + chr2L_5982822_5983009 chr2L_5982821_5982822;chr2L_5983009_5983010 chr2L_5982753_5982821;chr2L_5983010_5983236 0.59 0.59 0.00 1.06 0.34 0.77 0.48 0.43 0.61 0.00 1.10 0.38 0.92 0.77 0.60 0.24 0.00 0.00 0.00 0.65 0.00 1.53 0.43 0.90 0.87 0.53 2.11 2.72 1.79 1.56 0.00 0.52 1.14 0.43 0.34 0.00 0.53 0.00 0.85 0.85 0.00 0.64 0.00 0.88 0.00 0.64 0.00 2.92 0.22 0.88 0.41 0.34 0.58 0.81 0.92 1.01 0.68 4.00 K jcn_only_AA Bj1 chr3L - chr3L_5925418_5925624 chr3L_5925565_5925624 chr3L_5925625_5925725 96.55 NA NA 80.00 NA NA NA 100.00 96.88 NA NA 100.00 NA NA NA NA NA NA NA 96.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA 92.86 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 90.00 NA K alternative_donor CG4239,I_chrX_16279725_16280317 chrX + chrX_16279721_16281003;chrX_16279372_16281003 chrX_16279725_16281003 chrX_16281004_16281322;chrX_16279353_16279371 5.41 0.00 0.00 4.44 11.11 8.33 10.34 4.44 10.00 NA 40.00 4.26 8.33 0.00 5.26 7.69 0.00 7.69 4.76 7.32 33.33 0.00 5.00 3.33 4.55 10.53 4.35 4.35 6.67 15.38 9.09 7.14 15.38 4.65 4.76 5.56 9.38 3.12 4.55 3.39 NA 6.52 7.14 9.09 NA 4.76 0.00 9.09 4.23 0.00 6.25 0.00 5.88 7.69 5.26 3.85 10.00 25.00 K intron_retention Aldh-III,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3357019_3357229 chr2R_3357018_3357019;chr2R_3357229_3357230 chr2R_3356865_3357018;chr2R_3357230_3357350 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor stck,I_chr3R_4184313_4184380,I_chr3R_4184660_4184730 chr3R + chr3R_4182818_4184192;chr3R_4183179_4184192 chr3R_4182496_4184192 chr3R_4184193_4184312;chr3R_4182427_4182495 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Dscam,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3249373_3250528 chr2R_3249372_3249373;chr2R_3250528_3250529 chr2R_3249273_3249372;chr2R_3250529_3250559 35.71 NA NA 46.15 NA NA NA 35.71 13.33 NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA RpS18,CG8908,EI_chr2R_16151918_16151997,I_chr2R_16151918_16152036,I_chr2R_16151938_16152065,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151938_16152065;chr2R_16151938_16152036;chr2R_16151938_16151997 chr2R_16151938_16152006 chr2R_16151852_16151937;chr2R_16152066_16152066 0.01 0.00 0.00 0.02 0.00 0.04 0.02 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.02 0.04 0.01 0.01 0.01 0.01 0.00 0.00 0.01 0.01 0.03 0.03 0.01 0.33 0.01 0.03 0.02 0.00 0.04 0.01 0.00 0.01 0.00 0.00 0.00 0.03 0.00 0.01 0.02 0.00 0.02 0.00 0.01 0.02 0.01 0.00 0.02 0.02 0.00 0.00 0.01 0.01 0.01 0.00 K alternative_acceptor Cap-H2 chr3R + chr3R_6589674_6589832;chr3R_6589674_6589835 chr3R_6589674_6589871 chr3R_6588751_6589673;chr3R_6589872_6590095 0.00 16.67 0.00 9.09 NA 0.00 11.11 7.14 8.33 NA NA 0.00 0.00 0.00 14.29 0.00 11.11 NA 0.00 6.67 0.00 NA 0.00 0.00 NA 0.00 10.00 14.29 NA NA 0.00 NA NA 0.00 NA NA NA NA 12.50 14.29 NA 17.65 NA NA NA NA NA NA 11.11 NA 0.00 NA NA NA 0.00 NA NA NA K intron_retention Fer1HCH,I_chr3R_26212319_26213496,I_chr3R_26212834_26213185,I_chr3R_26213132_26213185 chr3R - chr3R_26213273_26213496 chr3R_26213272_26213273;chr3R_26213496_26213497 chr3R_26213186_26213272;chr3R_26213497_26213534 46.12 38.57 43.35 46.12 44.76 51.17 64.25 51.30 44.85 38.65 46.88 47.21 62.40 49.07 46.12 49.77 45.16 41.10 48.20 43.61 42.95 40.14 44.42 50.43 60.35 56.45 61.38 58.92 61.71 43.66 46.86 57.69 47.47 44.53 56.65 39.03 37.01 36.63 41.61 60.69 73.57 41.52 48.51 45.19 53.50 56.71 38.92 67.59 38.06 35.54 55.00 40.00 35.95 42.19 49.06 36.47 37.29 57.61 K intron_retention RpL35A chr3R - chr3R_1291750_1291874 chr3R_1291749_1291750;chr3R_1291874_1291875 chr3R_1291662_1291749;chr3R_1291875_1291974 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.06 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.03 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5850,I_chr2L_9963013_9963451 chr2L - chr2L_9961618_9961728 chr2L_9961617_9961618;chr2L_9961728_9961729 chr2L_9961359_9961617;chr2L_9961729_9961775 12.20 14.49 8.70 24.68 15.79 17.54 9.09 24.00 12.28 9.09 9.80 9.48 7.32 17.31 10.77 15.62 10.00 10.94 16.28 6.84 9.09 50.78 24.00 14.29 11.32 13.64 15.71 25.00 11.11 10.14 10.34 16.98 20.00 11.11 16.33 14.81 15.93 13.85 14.58 12.09 10.42 11.90 12.20 16.07 8.04 11.76 17.86 12.50 8.57 8.57 15.79 17.65 8.62 11.43 11.29 15.56 11.43 11.49 K intron_retention l(1)G0136 chrX + chrX_15629208_15629279 chrX_15629207_15629208;chrX_15629279_15629280 chrX_15629132_15629207;chrX_15629280_15629354 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD mthl3 chr2R - chr2R_13338538_13340067;chr2R_13338538_13340031;chr2R_13338538_13339957;chr2R_13338538_13340007 chr2R_13338538_13338593 chr2R_13338407_13338537;chr2R_13340068_13340078 8.70 14.29 0.00 14.71 NA NA 16.13 16.00 6.12 NA 4.76 6.25 4.26 10.00 5.00 13.95 12.90 12.50 3.70 5.56 10.00 35.00 NA NA NA NA 4.00 NA NA NA 2.94 NA NA 12.00 3.85 NA NA NA NA NA NA 5.13 12.00 NA NA 8.70 NA 9.52 2.63 NA 20.00 NA NA NA 4.35 NA NA NA K intron_retention CG12734,I_chr3L_3183812_3183932,CG42494,I_chr3L_3184645_3185360 chr3L + chr3L_3184645_3185228 chr3L_3184644_3184645;chr3L_3185228_3185229 chr3L_3184545_3184644;chr3L_3185229_3185272 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.46 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042888_5042960;chr2L_5042888_5043077 chr2L_5042888_5042983 chr2L_5042835_5042887;chr2L_5043078_5043083 17.24 26.67 14.29 23.81 26.32 15.00 30.00 19.57 16.42 0.00 34.78 26.98 41.67 25.00 21.88 14.55 26.09 23.81 9.68 12.00 28.00 14.29 19.35 15.38 11.11 14.81 16.67 25.00 16.67 9.52 25.00 14.29 16.67 15.69 36.84 11.11 41.94 10.53 13.64 21.21 18.75 14.58 30.43 12.12 17.65 10.34 14.81 21.05 23.64 22.22 14.81 23.81 25.00 10.53 35.14 8.70 17.24 9.09 K jcn_only_AD vir-1,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,noncoding_2764,I_chr2L_12421830_12423260 chr2L - chr2L_12421830_12423260;chr2L_12421830_12423333;chr2L_12421830_12423278 chr2L_12421830_12423322 chr2L_12421816_12421829;chr2L_12423334_12423360 93.81 93.15 93.10 93.78 93.26 91.73 92.20 89.14 91.88 95.28 90.99 94.60 91.59 89.40 91.42 95.01 88.42 92.90 90.50 95.53 87.50 93.81 94.33 96.31 93.18 92.48 94.39 94.04 92.49 94.78 95.10 95.30 92.96 90.99 95.63 89.92 93.52 96.12 96.35 93.39 93.88 93.23 91.49 94.85 92.05 96.26 96.38 96.08 93.87 94.46 96.06 94.13 95.65 95.23 93.41 94.00 95.40 95.40 N jcn_only_AA CG42490,noncoding_3620,I_chr2L_18665287_18666474,RI_chr2L_18666413_18666474,CREI_chr2L_18666629_18666680 chr2L + chr2L_18665915_18666474 chr2L_18665915_18666352 chr2L_18665676_18665914;chr2L_18666475_18666511 44.72 NA NA NA NA NA NA NA 58.33 NA NA 38.71 NA NA NA NA 35.00 NA NA 55.56 NA NA NA 41.67 NA NA NA NA NA NA 42.50 NA NA 45.00 NA NA 45.45 NA NA 48.28 NA 44.44 60.00 NA NA 53.12 NA NA 43.48 NA NA NA NA NA 38.46 NA NA NA K alternative_donor skpA chrX + chrX_550433_551131;chrX_550498_551131;chrX_550818_551131;chrX_550638_551131;chrX_550523_551131;chrX_550654_551131 chrX_550774_551131 chrX_551132_551937;chrX_550426_550432 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 K intron_retention CG4133 chr2L + chr2L_457563_457614 chr2L_457562_457563;chr2L_457614_457615 chr2L_457400_457562;chr2L_457615_458727 4.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 4.55 8.33 7.69 NA NA 35.00 35.29 0.00 NA 0.00 7.69 4.55 NA NA NA 10.53 NA 5.88 0.00 NA NA NA 0.00 14.29 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 K jcn_only_AD CG17019,I_chr2R_8821104_8821171 chr2R - chr2R_8821104_8821175 chr2R_8821104_8821171 chr2R_8821004_8821103;chr2R_8821176_8821271 0.00 0.00 0.00 0.00 0.00 1.80 0.00 0.00 0.00 0.00 1.16 0.95 0.00 0.00 0.79 0.60 0.00 1.00 0.00 0.32 0.89 0.00 0.00 0.00 0.00 0.99 0.70 0.83 0.70 0.00 0.00 0.00 0.00 1.06 0.00 0.61 0.69 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.52 0.00 0.00 1.03 0.00 0.81 0.70 0.00 0.00 0.61 N jcn_only_AD Aldolase,I_chr3R_22083764_22086684 chr3R - chr3R_22082030_22082195;chr3R_22082030_22082575 chr3R_22082030_22082256 chr3R_22081992_22082029 34.62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 34.62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG14741 chr3R - chr3R_7901435_7901500 chr3R_7901434_7901435;chr3R_7901500_7901501 chr3R_7901213_7901434;chr3R_7901501_7902013 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19563512_19564570 chr2R_19563512_19564543 chr2R_19563412_19563511;chr2R_19564571_19564665 100.00 100.00 100.00 99.33 100.00 100.00 98.44 100.00 100.00 100.00 98.72 99.38 100.00 98.97 100.00 100.00 100.00 100.00 100.00 99.43 100.00 100.00 100.00 100.00 100.00 100.00 98.85 NA 100.00 100.00 99.21 100.00 100.00 100.00 98.21 100.00 100.00 97.22 100.00 98.58 100.00 98.97 98.67 100.00 98.10 100.00 100.00 100.00 99.40 100.00 99.11 96.97 98.48 97.96 100.00 97.33 100.00 100.00 K intron_retention l(2)k01209,I_chr2R_13308079_13310771,I_chr2R_13309452_13310771,RI_chr2R_13310877_13311160 chr2R + chr2R_13308079_13308952 chr2R_13308078_13308079;chr2R_13308952_13308953 chr2R_13307979_13308078;chr2R_13308953_13309416 94.12 100.00 95.45 89.29 100.00 91.67 84.62 95.65 96.55 NA 90.91 96.00 90.91 100.00 100.00 92.59 100.00 94.12 94.12 91.43 100.00 100.00 96.00 96.30 100.00 77.27 88.57 100.00 96.15 93.75 86.96 100.00 88.89 96.43 100.00 83.33 100.00 92.86 90.00 100.00 83.33 88.89 87.50 93.33 NA 94.44 94.12 94.12 93.94 100.00 90.00 95.00 76.92 NA 91.30 91.67 83.33 85.71 K jcn_only_AA gwl chr3R + chr3R_14572444_14572973 chr3R_14572444_14572958 chr3R_14572389_14572443;chr3R_14572974_14573114 100.00 100.00 NA 100.00 NA NA 100.00 96.67 97.73 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 NA NA NA NA 97.50 NA 100.00 100.00 NA NA 100.00 NA NA NA K alternative_donor CG13865,I_chrX_22415456_22415654,RI_chrX_22415518_22416288 chrX + chrX_22415456_22415654 chrX_22415518_22415654 chrX_22415655_22415754;chrX_22415418_22415455 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 98.72 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 97.06 100.00 97.06 98.25 97.96 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 97.50 96.67 98.11 98.21 100.00 100.00 100.00 100.00 100.00 97.62 100.00 97.56 100.00 K intron_retention noncoding_14427,F_chr3R_20600_20670,F_chr3R_21535_21590 chr3R + chr3R_20596_20670 chr3R_20595_20596;chr3R_20670_20671 chr3R_20500_20595;chr3R_20671_20770 10.53 NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette Rheb,RI_chr3R_1395455_1395563,CRMP chr3R + chr3R_1395194_1395563 chr3R_1395194_1395296;chr3R_1395505_1395563 chr3R_1395297_1395504 chr3R_1395122_1395193;chr3R_1395564_1395663 89.13 88.00 86.27 77.22 83.58 88.89 87.02 86.34 86.67 95.35 89.71 88.75 93.06 90.00 86.54 90.70 87.67 89.66 86.02 87.38 90.24 62.16 86.73 86.90 81.82 82.28 88.78 96.77 89.36 86.11 89.29 94.12 91.11 92.91 90.48 80.56 92.31 85.51 90.20 89.83 85.48 88.70 90.62 96.51 89.42 93.58 87.30 95.89 92.18 77.32 85.88 84.48 89.23 94.83 89.81 89.13 92.55 95.96 K jcn_only_AD mei-P26 chrX + chrX_9057324_9059714 chrX_9057432_9059714 chrX_9059715_9060492;chrX_9057300_9057323 82.84 NA 85.00 NA NA NA NA 78.26 NA NA NA 81.82 NA NA 95.45 84.62 NA NA NA 96.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 83.87 NA NA NA NA NA NA NA 75.00 NA NA NA NA NA 46.88 75.00 NA NA NA NA NA NA NA NA NA K intron_retention CtBP chr3R + chr3R_8850767_8851110 chr3R_8850766_8850767;chr3R_8851110_8851111 chr3R_8850546_8850766;chr3R_8851111_8851987 29.59 21.74 NA 66.67 33.33 NA 33.33 37.50 34.62 NA 28.57 35.29 NA 25.00 25.00 35.29 NA NA NA 30.77 NA 29.17 NA 25.00 33.33 NA NA 61.54 NA 30.00 NA 41.67 28.57 31.25 NA 15.38 19.23 23.08 42.11 29.17 NA 34.78 NA 31.82 6.25 30.77 12.50 NA 26.32 12.00 25.00 NA NA 28.57 NA NA 17.65 38.46 K intron_retention Aldh-III,I_chr2R_3356541_3356614,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3356043_3356864 chr2R_3356042_3356043;chr2R_3356864_3356865 chr2R_3355927_3356042;chr2R_3356865_3357018 24.69 30.26 24.14 31.78 27.85 27.85 28.09 39.50 19.57 42.86 21.95 25.87 40.00 29.41 24.18 23.08 22.09 34.00 27.10 24.02 21.92 58.33 22.89 20.00 42.86 33.33 32.18 35.00 23.08 25.00 30.93 16.28 13.16 27.12 25.00 21.74 18.09 17.28 23.58 24.71 26.67 24.69 27.94 19.48 11.63 22.09 16.30 26.92 24.65 16.44 21.88 26.92 16.67 27.12 27.55 17.82 15.62 24.32 K intron_retention CG3893,CSN1b chr3L - chr3L_18894352_18894419 chr3L_18894351_18894352;chr3L_18894419_18894420 chr3L_18893716_18894351;chr3L_18894420_18894673 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD osa chr3R - chr3R_13522309_13523386 chr3R_13522309_13523377 chr3R_13522092_13522308;chr3R_13523387_13523635 20.18 17.12 15.79 25.10 23.58 18.35 21.17 19.91 14.07 20.75 21.49 21.55 23.93 12.71 21.74 14.53 21.17 23.85 23.08 21.24 24.72 18.84 23.12 15.11 11.11 21.19 19.88 30.19 34.10 17.59 20.18 19.75 19.84 16.22 16.67 19.63 16.57 15.84 25.00 6.91 21.30 20.47 21.70 21.32 18.89 20.00 25.33 28.57 14.68 19.51 22.86 14.77 31.25 14.81 18.67 25.35 25.93 13.79 K intron_retention I_chr2L_100704_100835,CG11377 chr2L + chr2L_103435_103515 chr2L_103434_103435;chr2L_103515_103516 chr2L_103006_103434;chr2L_103516_104142 1.80 0.00 1.04 6.42 3.03 1.32 1.92 3.05 3.07 0.00 1.52 3.97 1.43 3.26 2.20 4.80 0.00 0.00 2.78 0.99 1.72 2.56 7.27 2.99 0.00 1.80 8.00 7.25 2.53 0.00 3.08 1.82 2.53 3.33 0.00 10.53 0.95 0.00 1.98 0.81 1.22 3.61 1.27 0.00 0.00 2.34 0.00 1.37 2.21 2.56 3.23 0.00 1.10 0.00 1.68 4.35 0.00 1.31 K jcn_only_AA PGRP-LA chr3L + chr3L_9330034_9330097 chr3L_9330034_9330085 chr3L_9329812_9330033;chr3L_9330098_9330321 54.59 48.15 NA 43.48 NA NA NA 57.14 58.97 NA NA NA NA NA NA 55.00 NA NA NA NA NA 57.50 NA 53.85 NA NA NA 55.00 NA NA NA NA NA 63.64 NA NA 42.31 NA 50.00 44.00 NA 46.43 NA NA NA NA 53.85 NA 57.14 NA NA NA 54.17 NA NA 55.00 60.00 NA K multi_cassette unc-13,RI_chr4_892852_895828,RI_chr4_894198_895828,E_chr4_894796_894871,I_chr4_895008_895828,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_894198_895828 chr4_894198_894260;chr4_894553_894619;chr4_894787_894871;chr4_895094_895828 chr4_894261_894552;chr4_894620_894786;chr4_894872_895093 chr4_894098_894197;chr4_895829_895928 97.62 100.00 96.00 100.00 94.74 100.00 95.40 95.56 98.31 100.00 100.00 98.04 96.00 96.00 96.77 100.00 95.83 100.00 100.00 97.87 100.00 97.26 100.00 96.55 96.67 96.15 96.23 94.74 94.12 95.65 97.83 95.00 84.21 98.00 100.00 97.37 100.00 94.12 96.15 100.00 95.83 92.00 95.83 93.48 100.00 100.00 100.00 96.67 97.78 100.00 97.62 100.00 100.00 100.00 87.50 100.00 96.67 100.00 K jcn_only_AA Zyx102EF,I_chr4_1078380_1078835,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1078644_1078835;chr4_1078778_1078835;chr4_1078782_1078835 chr4_1078666_1078835 chr4_1078836_1078848;chr4_1078433_1078643 48.00 NA NA 54.17 NA NA 35.00 57.89 48.00 NA NA 57.14 NA NA NA 54.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.91 NA NA 31.03 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 45.71 NA NA NA NA NA NA NA NA NA N alternative_donor sxc,I_chr2R_1203985_1205289,I_chr2R_1208121_1213310,I_chr2R_1213177_1213308 chr2R + chr2R_1194785_1194977;chr2R_1194858_1194977 chr2R_1194919_1194977 chr2R_1194978_1195157;chr2R_1194775_1194784 87.50 NA NA 100.00 NA NA NA 77.78 87.50 NA NA 100.00 NA NA NA 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA K intron_retention Mocs1,I_chr3L_11064230_11064309 chr3L + chr3L_11064230_11064658 chr3L_11064229_11064230;chr3L_11064658_11064659 chr3L_11064151_11064229;chr3L_11064659_11065510 0.00 0.00 NA 10.53 NA NA 2.70 0.00 0.00 0.00 NA 0.00 NA NA 0.00 13.33 NA NA NA 0.00 NA 3.23 0.00 0.00 0.00 NA 0.00 0.00 4.44 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 NA 0.00 0.00 0.00 K cassette B52,F_chr3R_9488762_9491174,E_chr3R_9488770_9491174,RI_chr3R_9489655_9489713 chr3R + chr3R_9488774_9489733 chr3R_9488774_9489176;chr3R_9489655_9489733 chr3R_9489177_9489654 chr3R_9488692_9488773;chr3R_9489734_9489796 92.50 95.83 92.00 100.00 80.95 89.47 77.42 100.00 92.73 81.08 95.65 91.84 82.76 92.31 85.71 97.14 95.45 95.00 92.59 86.00 95.65 97.44 88.33 92.50 86.67 78.26 93.75 96.55 72.34 97.56 59.00 97.30 98.11 90.24 96.67 97.56 92.00 87.10 91.89 92.75 89.74 95.74 95.83 90.91 90.62 92.86 96.15 93.65 93.48 90.62 91.84 89.29 80.77 84.00 96.55 92.68 86.96 95.31 K alternative_acceptor RI_chr3L_19787260_19787323,Ir76a,RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19795029_19795090;chr3L_19795029_19795086 chr3L_19795029_19795077 chr3L_19795020_19795028;chr3L_19795091_19795214 2.94 NA NA NA NA NA NA 12.50 0.00 NA NA NA NA NA NA 14.29 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 5.88 NA NA NA NA NA NA NA NA NA K intron_retention oaf chr2L + chr2L_2495889_2496398 chr2L_2495888_2495889;chr2L_2496398_2496399 chr2L_2495570_2495888;chr2L_2496399_2497357 0.00 0.00 11.11 0.00 NA NA NA 11.76 0.00 3.03 0.00 12.90 NA NA 11.76 NA NA 0.00 NA 8.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 15.00 0.00 NA NA 0.00 5.26 NA 0.00 0.00 3.45 5.88 0.00 NA 8.00 NA 3.70 0.00 0.00 0.00 2.70 6.90 NA 4.76 NA NA 0.00 0.00 NA NA 0.00 K intron_retention Cip4,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4327703_4327772 chr3L_4327702_4327703;chr3L_4327772_4327773 chr3L_4327233_4327702;chr3L_4327773_4327917 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.95 0.00 2.89 1.98 0.00 0.52 0.88 0.00 0.20 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG8001 chr3L + chr3L_1757204_1757321 chr3L_1757204_1757306 chr3L_1756612_1757203;chr3L_1757322_1758146 2.01 1.96 1.47 3.23 2.70 2.82 0.00 2.67 1.87 7.14 5.13 2.06 0.00 4.76 1.61 0.00 6.06 5.08 1.67 1.35 2.44 1.20 2.63 0.00 0.00 3.70 3.57 0.00 2.17 2.82 0.00 2.33 3.17 2.41 1.96 0.00 4.17 0.00 3.85 1.22 4.11 0.98 2.17 1.72 1.33 2.11 2.33 2.01 3.51 0.00 2.60 0.00 2.17 0.00 1.37 0.00 0.00 1.38 K alternative_donor Amun,I_chrX_11607839_11608272,I_chrX_11607842_11608105,I_chrX_11607842_11608125,RI_chrX_11607842_11608272 chrX - chrX_11607839_11608590 chrX_11607839_11608507 chrX_11607788_11607838;chrX_11608591_11608810 64.29 88.89 55.56 66.67 70.00 64.29 56.25 65.22 51.43 NA 75.00 62.07 44.44 64.29 57.14 75.00 71.43 64.71 50.00 62.50 81.82 52.00 71.43 83.33 77.78 61.90 90.91 60.00 68.42 39.29 75.00 46.15 39.66 70.83 66.67 60.00 60.00 62.50 83.33 58.33 64.29 75.00 72.73 50.00 55.56 63.33 60.00 45.45 68.97 60.00 72.73 83.33 61.54 55.56 64.29 90.00 77.78 37.84 K intron_retention I_chr2R_19932706_19933121,gammaSnap chr2R - chr2R_19935974_19936161 chr2R_19935973_19935974;chr2R_19936161_19936162 chr2R_19935858_19935973;chr2R_19936162_19936229 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG5961,RI_chr3R_8285626_8285694,I_chr3R_8285631_8285980 chr3R - chr3R_8285626_8285694 chr3R_8285631_8285694 chr3R_8285695_8285734;chr3R_8285531_8285625 93.75 100.00 NA NA NA NA 90.91 90.91 88.24 NA NA NA NA NA 87.50 75.00 NA NA 100.00 93.75 NA NA 100.00 100.00 NA NA 90.00 100.00 NA NA 100.00 NA NA 92.86 NA NA 90.00 100.00 NA 92.31 NA 100.00 NA 88.89 NA 90.00 NA 90.00 100.00 NA 100.00 100.00 88.89 100.00 NA 100.00 92.86 100.00 N jcn_only_AD Lag1,RI_chrX_6153758_6153930,I_chrX_6153758_6155077,RI_chrX_6153758_6161036,I_chrX_6160907_6161036 chrX - chrX_6153758_6155077;chrX_6153758_6154631;chrX_6153758_6161036;chrX_6153758_6154193;chrX_6153758_6154358;chrX_6153758_6160439 chrX_6153758_6153930 chrX_6153658_6153757;chrX_6161037_6161136 0.28 0.26 0.00 0.46 0.00 0.97 0.64 0.00 0.47 0.75 0.47 0.30 0.34 1.08 0.75 0.69 0.66 0.49 0.00 0.11 0.24 0.00 0.26 0.28 0.00 0.00 0.00 0.27 0.35 0.64 0.50 0.95 0.86 0.18 0.62 0.00 0.13 0.00 0.00 0.61 0.94 1.21 0.34 0.22 0.33 0.54 0.21 0.36 0.33 0.00 0.00 0.00 0.00 0.00 0.23 0.60 0.00 0.00 K intron_retention CG8677 chr2L + chr2L_21223128_21223191 chr2L_21223127_21223128;chr2L_21223191_21223192 chr2L_21222678_21223127;chr2L_21223192_21224563 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 NA 5.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.77 0.00 NA 0.00 0.00 0.00 0.00 NA 2.56 0.00 0.00 NA 0.00 NA 2.94 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K alternative_donor CG17549,R_chr2L_19388305_19388473,RI_chr2L_19388570_19389427,I_chr2L_19388570_19389922 chr2L - chr2L_19388570_19389427;chr2L_19388570_19389764;chr2L_19388570_19389935 chr2L_19388570_19389926 chr2L_19388474_19388569;chr2L_19389936_19390022 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA 20.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 0.00 0.00 NA NA NA NA NA NA NA 0.00 NA N jcn_only_AA HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13164646_13165514;chrX_13164727_13165514 chrX_13164676_13165514 chrX_13165515_13165622;chrX_13164424_13164645 91.94 89.23 93.75 81.74 87.32 88.24 78.46 90.22 92.80 92.68 89.81 91.78 93.33 92.75 88.71 91.05 94.94 90.24 93.08 80.69 88.79 91.94 88.21 94.62 89.17 95.03 90.55 94.87 84.30 90.31 93.63 92.22 93.04 94.19 91.54 80.00 89.27 92.02 85.79 92.03 91.43 94.51 89.12 92.90 93.83 90.07 92.00 92.27 90.68 94.16 92.31 93.62 95.71 95.89 92.95 93.14 87.06 88.70 K jcn_only_AD CG5018,PDCD-5 chr3L - chr3L_16219459_16219686 chr3L_16219459_16219677 chr3L_16219222_16219458;chr3L_16219687_16221520 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD RpL10Ab chr3L + chr3L_11816530_11816757;chr3L_11816666_11816757 chr3L_11816456_11816757 chr3L_11816758_11817314;chr3L_11816300_11816455 98.71 98.77 99.14 99.10 99.03 99.17 98.61 98.99 98.90 98.21 98.59 98.71 98.75 98.63 98.99 98.96 98.94 98.98 98.84 99.01 98.89 96.14 98.09 98.39 98.22 98.99 98.44 96.20 98.56 98.06 95.28 98.67 98.82 98.95 98.42 98.58 98.37 98.37 98.83 98.85 98.04 98.72 99.03 98.28 98.87 98.78 98.12 98.97 97.96 97.93 97.51 97.66 98.87 98.34 99.08 98.21 98.61 99.32 K intron_retention CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8188878_8188931 chr2L_8188877_8188878;chr2L_8188931_8188932 chr2L_8188736_8188877;chr2L_8188932_8189129 1.37 0.00 1.38 1.10 1.32 2.73 1.34 1.79 1.36 1.82 0.00 2.03 0.71 1.37 0.62 0.00 1.19 0.00 2.09 0.72 1.32 1.40 0.72 0.49 3.52 2.65 3.79 11.57 1.91 1.72 2.13 0.00 0.49 2.20 0.85 0.00 1.04 2.68 0.93 2.52 0.00 2.12 1.39 0.99 2.80 1.91 1.16 0.66 2.50 2.75 2.98 0.00 1.39 0.00 2.30 1.59 2.35 0.00 K intron_retention Hsc70Cb chr3L + chr3L_14034623_14035258 chr3L_14034622_14034623;chr3L_14035258_14035259 chr3L_14034527_14034622;chr3L_14035259_14035459 0.00 0.00 NA NA NA NA NA NA 4.00 NA NA NA NA NA NA NA NA 0.00 NA 6.25 NA NA NA NA NA NA 0.00 9.09 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA 0.00 K alternative_donor CG5284,I_chr3L_16086347_16086804 chr3L + chr3L_16083622_16084615 chr3L_16084019_16084615 chr3L_16084616_16084958;chr3L_16083606_16083621 96.99 96.77 92.97 95.03 97.67 95.92 98.73 97.66 95.04 92.42 95.65 96.52 95.40 95.54 99.23 99.40 98.85 97.06 96.99 95.80 98.97 95.62 99.36 95.58 97.67 99.08 97.48 92.77 99.05 96.15 99.24 93.75 95.35 95.48 96.67 98.95 88.97 97.03 96.90 95.92 97.92 94.84 94.38 98.92 92.59 97.30 98.81 96.94 98.91 96.88 97.66 98.73 97.73 97.78 99.18 98.33 97.62 95.65 K jcn_only_AD Pi3K92E,I_chr3R_16459436_16459551,I_chr3R_16459436_16459848 chr3R - chr3R_16459436_16459848;chr3R_16459436_16460267;chr3R_16459436_16460340;chr3R_16459436_16460287 chr3R_16459436_16459551 chr3R_16459336_16459435;chr3R_16460341_16460435 2.78 5.41 0.00 4.23 0.00 6.90 4.92 1.47 1.23 0.00 0.00 5.95 3.12 1.69 1.82 2.67 2.50 2.78 2.27 1.59 0.00 3.45 0.00 4.35 9.68 2.22 4.35 3.57 4.76 4.17 4.08 NA 0.00 3.45 11.43 0.00 0.00 0.00 2.78 0.00 5.00 2.82 3.23 0.00 NA 3.85 0.00 8.82 4.76 NA 1.96 3.03 NA NA 3.92 0.00 4.00 NA K intron_retention CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525393_1526659 chr3L_1525392_1525393;chr3L_1526659_1526660 chr3L_1525293_1525392;chr3L_1526660_1526731 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 NA 90.91 NA 100.00 NA 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 K jcn_only_AD shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9770053_9781634 chr2R_9770053_9771599 chr2R_9769906_9770052;chr2R_9781635_9782097 88.89 88.37 95.00 87.08 90.59 89.90 96.91 80.62 90.76 73.24 86.30 94.67 88.03 96.43 89.83 90.44 95.35 95.83 87.07 86.60 85.96 80.15 85.29 92.31 87.04 94.95 91.89 95.00 72.73 89.55 82.76 NA 75.00 91.86 92.54 84.38 92.86 93.62 87.36 83.17 70.00 88.44 90.72 86.02 NA NA 88.10 77.78 93.75 NA 88.89 90.74 100.00 NA 88.05 NA NA NA K intron_retention CG3609,I_chr2L_2372744_2372829,RI_chr2L_2373723_2374295 chr2L - chr2L_2372771_2372829 chr2L_2372770_2372771;chr2L_2372829_2372830 chr2L_2372455_2372770;chr2L_2372830_2372898 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 2.63 1.38 1.12 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 1.31 0.00 1.35 0.00 1.58 0.00 1.33 0.97 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 1.72 K alternative_donor slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,RI_chr2R_20289332_20289739,I_chr2R_20289332_20289846,I_chr2R_20289332_20290093 chr2R - chr2R_20289332_20290083;chr2R_20289332_20290093;chr2R_20289332_20289846 chr2R_20289332_20289739 chr2R_20289232_20289331;chr2R_20290094_20290193 42.11 37.50 52.63 55.17 42.86 40.00 47.37 46.51 43.64 60.00 50.00 40.00 50.00 36.36 43.48 46.81 40.00 45.00 45.83 48.89 42.11 39.13 33.33 41.18 46.67 42.11 36.00 42.11 50.00 33.33 37.04 50.00 57.89 43.90 33.33 31.82 43.75 33.33 58.33 35.29 40.00 53.66 36.84 28.57 40.00 31.25 16.67 38.46 39.02 50.00 32.00 31.58 30.00 33.33 44.00 50.00 44.44 36.84 K jcn_only_AD CG2924,I_chrX_2163288_2163676,I_chrX_2163738_2163863,I_chrX_2163738_2164440,I_chrX_2163738_2164560,I_chrX_2168373_2168893 chrX - chrX_2163738_2164731;chrX_2163738_2164670 chrX_2163738_2164440 chrX_2163677_2163737;chrX_2164732_2164736 22.73 NA NA 15.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 22.73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention sol chrX + chrX_21224091_21225120 chrX_21224090_21224091;chrX_21225120_21225121 chrX_21223780_21224090;chrX_21225121_21225440 61.90 61.54 51.22 79.41 50.00 56.67 62.86 51.28 56.82 61.90 52.38 42.11 41.38 52.17 66.67 78.57 59.09 65.38 83.33 44.19 62.50 84.13 66.67 59.65 57.89 76.00 58.70 54.55 69.77 64.58 47.17 89.47 86.27 64.81 59.38 71.43 59.72 60.78 57.35 72.50 82.61 67.19 70.83 83.78 62.50 74.29 60.00 71.43 57.38 60.87 50.91 61.11 65.38 48.00 70.00 56.67 70.83 86.96 K intron_retention WASp,I_chr3R_24656400_24657416 chr3R - chr3R_24652597_24652668 chr3R_24652596_24652597;chr3R_24652668_24652669 chr3R_24651964_24652596;chr3R_24652669_24652896 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.53 3.92 2.60 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.80 0.00 0.00 2.35 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.76 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG7546 chr3L + chr3L_7508878_7508970;chr3L_7508878_7508967 chr3L_7508878_7508925 chr3L_7508741_7508877;chr3L_7508971_7509150 13.41 12.82 13.51 21.59 12.28 24.24 10.39 16.25 13.44 16.42 7.55 13.79 10.00 17.31 14.47 15.25 5.66 11.11 21.43 20.27 22.22 14.00 8.26 11.49 9.76 16.36 11.11 10.87 13.64 12.05 9.09 13.85 26.88 20.00 13.41 5.15 10.58 10.90 7.33 11.02 14.06 20.31 12.50 6.15 18.29 7.77 14.39 14.29 16.67 10.94 13.33 14.81 7.77 13.22 20.63 8.16 7.86 27.87 K intron_retention dmondo,I_chr2L_21286573_21287203,I_chr2L_21301528_21308287,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579 chr2L - chr2L_21286619_21287203 chr2L_21286618_21286619;chr2L_21287203_21287204 chr2L_21286489_21286618;chr2L_21287204_21287303 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention fdl,RI_chr2R_8394261_8394315 chr2R - chr2R_8394261_8394315 chr2R_8394260_8394261;chr2R_8394315_8394316 chr2R_8394223_8394260;chr2R_8394316_8394415 88.89 NA NA 93.75 NA NA NA NA 91.67 NA NA 71.43 NA NA NA NA NA 73.33 NA 93.33 88.89 NA 90.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 77.78 NA NA NA NA NA NA NA NA 77.78 NA 70.00 80.00 NA NA NA NA NA 88.89 NA NA NA N intron_retention 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5993610_5993828 chr2R_5993609_5993610;chr2R_5993828_5993829 chr2R_5993510_5993609;chr2R_5993829_5993921 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.91 100.00 100.00 100.00 87.60 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1666133_1670281 chr2R_1666219_1670281 chr2R_1670282_1670304;chr2R_1666119_1666132 85.71 NA NA 72.41 NA NA 80.95 85.71 80.49 NA NA 88.89 86.21 85.00 NA 88.89 72.73 NA NA 89.19 NA NA NA NA NA NA NA NA NA 65.00 NA NA 90.00 87.88 NA NA NA NA NA 92.31 NA 100.00 NA 92.86 NA 89.66 NA 78.05 85.42 NA NA NA NA NA 84.00 NA NA 80.39 K intron_retention Mlf,noncoding_7111,CEI_chr2R_11826763_11827279 chr2R - chr2R_11825385_11825951 chr2R_11825384_11825385;chr2R_11825951_11825952 chr2R_11825316_11825384;chr2R_11825952_11826483 7.29 6.12 7.50 9.95 4.59 4.96 12.68 7.34 4.86 14.29 15.91 13.53 38.98 7.78 10.09 5.69 8.08 11.25 7.34 8.35 10.75 5.64 6.88 7.41 7.76 7.37 9.71 14.89 13.13 4.39 6.93 4.71 4.71 5.64 6.98 7.29 5.43 4.52 5.80 8.00 7.09 7.04 7.41 4.49 7.81 8.61 9.33 5.91 7.56 5.00 8.72 6.82 3.72 7.14 4.88 5.70 3.77 3.64 K jcn_only_AA asrij,MED23 chr2R + chr2R_18774772_18774832 chr2R_18774772_18774829 chr2R_18774708_18774771;chr2R_18774833_18774897 52.83 59.60 58.49 62.50 52.00 72.41 57.75 45.00 50.79 49.67 52.27 66.33 66.67 40.00 56.90 67.74 66.67 50.00 50.00 52.83 54.76 54.55 49.83 51.26 52.21 53.57 60.29 48.65 51.85 52.10 62.71 52.55 53.38 42.59 60.18 55.73 55.59 52.17 57.28 54.35 59.24 55.14 62.07 48.13 48.70 52.05 49.06 47.33 45.76 54.13 52.38 47.83 59.29 49.53 63.04 58.85 47.98 37.50 K jcn_only_AD chico chr2L - chr2L_10246040_10247024;chr2L_10246040_10246755;chr2L_10246040_10246867;chr2L_10246040_10246899 chr2L_10246040_10246184 chr2L_10245878_10246039;chr2L_10247025_10247051 3.45 0.00 0.00 5.00 12.50 0.00 6.25 4.76 5.62 NA 12.12 6.49 5.13 2.94 0.00 3.85 3.12 0.00 7.69 3.37 9.68 13.95 2.86 2.17 3.33 5.00 2.04 2.44 0.00 2.27 2.08 0.00 2.63 8.47 6.45 8.51 0.00 5.66 7.02 3.70 NA 6.15 5.56 3.28 4.17 2.94 9.38 0.00 6.10 4.88 5.17 3.03 0.00 4.55 0.00 3.33 3.45 0.00 K jcn_only_AD CG4853,CG4866 chr2R + chr2R_13401922_13402084 chr2R_13401924_13402084 chr2R_13402085_13403034;chr2R_13401783_13401921 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.21 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6891,RI_chrX_18670889_18674713,I_chrX_18673576_18674713,RI_chrX_18674227_18674713 chrX + chrX_18670682_18674713 chrX_18670681_18670682;chrX_18674713_18674714 chrX_18670530_18670681;chrX_18674714_18674813 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA K intron_retention Su(z)12 chr3L - chr3L_19912391_19913253 chr3L_19912390_19912391;chr3L_19913253_19913254 chr3L_19911385_19912390;chr3L_19913254_19914086 28.21 36.00 33.33 0.00 30.00 31.25 21.43 32.00 21.28 9.09 18.75 28.21 14.29 60.00 28.57 38.10 37.50 33.33 50.00 21.13 14.29 10.53 31.25 20.00 21.74 26.32 20.00 4.35 27.27 41.67 28.57 33.33 29.41 21.88 17.86 28.00 24.14 27.27 22.73 39.29 20.00 22.00 36.36 33.33 24.44 40.62 33.33 32.35 32.43 26.47 18.92 31.58 31.82 16.67 44.44 21.43 41.67 39.22 K intron_retention eIF3-S10,I_chr3R_259324_259488 chr3R - chr3R_259324_259420 chr3R_259323_259324;chr3R_259420_259421 chr3R_259224_259323;chr3R_259421_259577 0.38 1.08 0.00 1.27 0.00 0.00 0.00 0.29 0.68 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.54 0.55 0.90 0.27 0.49 0.89 0.82 0.85 0.57 0.00 1.58 0.82 2.36 0.00 0.50 0.00 0.00 0.55 0.56 2.84 0.00 0.00 0.82 0.76 1.83 0.45 0.00 0.00 0.00 0.00 0.00 1.43 0.38 0.57 0.00 1.69 0.00 0.95 0.38 0.66 0.00 0.00 K intron_retention C3G chrX - chrX_6677812_6677922 chrX_6677811_6677812;chrX_6677922_6677923 chrX_6677643_6677811;chrX_6677923_6678587 2.96 2.35 2.94 4.59 4.00 4.86 22.75 2.97 3.63 1.82 6.74 2.92 3.03 1.89 2.48 2.96 1.43 2.45 0.85 2.05 3.70 4.27 3.72 3.94 3.41 2.29 7.84 5.22 9.15 2.67 1.22 4.00 2.66 3.45 2.30 1.15 2.28 2.42 3.05 2.07 5.62 1.95 5.00 1.31 3.23 3.05 0.72 4.05 2.59 3.68 3.15 3.23 2.42 1.94 1.25 2.63 0.00 3.57 K alternative_acceptor bol,I_chr3L_9095908_9105733,RI_chr3L_9117011_9118271 chr3L - chr3L_9100796_9101055 chr3L_9100811_9101055 chr3L_9101056_9101135;chr3L_9100749_9100795 100.00 NA NA NA NA NA NA NA 88.89 NA NA 100.00 NA NA NA NA NA NA NA 90.00 NA 100.00 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA 88.89 NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG14711,CG18764,CG14712 chr3R + chr3R_7450383_7450439 chr3R_7450382_7450383;chr3R_7450439_7450440 chr3R_7450272_7450382;chr3R_7450440_7450550 0.00 NA 0.00 0.00 NA 0.00 0.00 2.94 5.71 NA 0.00 3.23 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 8.70 0.00 0.00 0.00 3.85 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 2.86 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 K jcn_only_AA eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20344831_20346544 chr3L_20344831_20345906 chr3L_20344683_20344830;chr3L_20346545_20346686 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27761114_27762991,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27707594_27801169 chr3R_27707594_27771343;chr3R_27771381_27784756;chr3R_27784850_27798223;chr3R_27798276_27801169 chr3R_27771344_27771380;chr3R_27784757_27784849;chr3R_27798224_27798275 chr3R_27707494_27707593;chr3R_27801170_27801219 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 80.00 100.00 100.00 100.00 NA 100.00 100.00 87.50 100.00 83.33 100.00 100.00 NA 80.00 100.00 NA NA 100.00 100.00 NA 80.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 87.50 NA 85.71 NA 100.00 100.00 100.00 77.78 100.00 100.00 100.00 100.00 NA 83.33 NA 100.00 83.33 K cassette east,CR_chrX_1912038_1912737 chrX + chrX_1912038_1912737 chrX_1912038_1912112;chrX_1912243_1912737 chrX_1912113_1912242 chrX_1911938_1912037;chrX_1912738_1912837 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention qkr58E-1,I_chr2R_18300846_18301656 chr2R - chr2R_18300846_18301605 chr2R_18300845_18300846;chr2R_18301605_18301606 chr2R_18300746_18300845;chr2R_18301606_18301787 6.78 12.12 4.35 10.00 0.00 10.34 15.00 6.90 12.31 12.50 7.41 11.32 22.22 5.56 9.76 31.58 5.26 6.67 7.69 6.56 0.00 6.45 3.57 7.55 0.00 10.53 0.00 4.17 0.00 17.14 5.00 9.09 8.00 4.17 4.65 0.00 2.27 0.00 1.82 6.78 0.00 11.54 9.52 0.00 4.55 7.27 7.69 8.82 8.33 4.26 7.55 0.00 0.00 0.00 12.90 6.25 9.76 10.00 K intron_retention CG7598 chr3R + chr3R_25563240_25563297 chr3R_25563239_25563240;chr3R_25563297_25563298 chr3R_25562570_25563239;chr3R_25563298_25563846 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.80 0.00 0.00 1.12 0.00 0.00 1.06 1.28 0.63 K jcn_only_AA PRL-1,RI_chr2L_16249092_16250080,I_chr2L_16250028_16250080 chr2L - chr2L_16250028_16250080;chr2L_16249707_16250080;chr2L_16249092_16250080 chr2L_16249722_16250080 chr2L_16250081_16250158;chr2L_16248992_16249091 0.00 0.35 0.00 0.60 0.00 0.47 0.00 0.51 0.12 0.00 0.34 0.00 0.00 0.32 0.34 0.00 0.00 0.36 0.00 0.00 0.32 0.00 0.00 0.28 0.00 0.00 0.26 0.85 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.44 0.00 0.38 0.42 0.00 0.00 0.17 0.35 0.00 0.00 0.00 0.47 0.85 0.54 0.00 0.27 0.00 0.00 0.90 0.28 0.00 0.00 0.00 K alternative_last_exon shep,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5154702_5155555 chr3L_5154909_5155555 chr3L_5148960_5154701 chr3L_5154823_5154908 chr3L_5155556_5155643 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chrX_502548_513324,CG13366,I_chrX_505719_505889,I_chrX_508729_508806,I_chrX_509727_511477,I_chrX_510004_511407,I_chrX_513176_513324,I_chrX_513519_513631 chrX - chrX_506067_506124 chrX_506066_506067;chrX_506124_506125 chrX_505890_506066;chrX_506125_506241 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Vha68-2 chr2L + chr2L_12974444_12975613 chr2L_12974443_12974444;chr2L_12975613_12975614 chr2L_12974270_12974443;chr2L_12975614_12975712 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG18659,E_chr2R_5011363_5019110,RI_chr2R_5013572_5014531,I_chr2R_5016147_5016997 chr2R - chr2R_5011651_5014531 chr2R_5011650_5011651;chr2R_5014531_5014532 chr2R_5011194_5011650;chr2R_5014532_5014631 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 NA 96.55 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA NA 100.00 NA 100.00 94.12 NA NA 100.00 100.00 100.00 NA 88.89 NA 100.00 100.00 100.00 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16106466_16106984;chr3L_16106466_16107411 chr3L_16106466_16106995 chr3L_16106332_16106465 20.97 24.44 14.10 18.67 18.60 21.28 18.67 22.09 25.78 18.00 37.88 19.51 20.41 20.97 18.64 22.64 27.03 13.21 13.89 17.09 39.02 9.09 19.23 24.05 18.75 32.79 18.99 14.00 27.45 14.86 15.94 22.50 22.33 20.99 6.90 16.67 25.21 27.42 25.00 13.76 15.00 24.78 16.67 27.63 22.45 18.33 19.51 23.47 19.09 22.41 23.36 26.79 27.27 21.74 14.93 23.81 23.33 20.37 N intron_retention sax,CG1882 chr2R + chr2R_3700498_3700802 chr2R_3700497_3700498;chr2R_3700802_3700803 chr2R_3699932_3700497;chr2R_3700803_3702250 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor Uba1,I_chr2R_5579209_5579407 chr2R - chr2R_5579209_5579786 chr2R_5579209_5579407 chr2R_5579109_5579208;chr2R_5579787_5580879 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.20 0.00 0.00 0.00 0.48 1.06 0.27 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.21 0.00 0.00 0.00 0.26 0.00 0.44 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 K intron_retention sut1,I_chr2R_3970908_3972035,sut2 chr2R + chr2R_3973590_3973831 chr2R_3973589_3973590;chr2R_3973831_3973832 chr2R_3973487_3973589;chr2R_3973832_3974552 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 1.35 0.00 1.54 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 1.14 K intron_retention Tsp42Ea,CG30159 chr2R + chr2R_2880566_2880625 chr2R_2880565_2880566;chr2R_2880625_2880626 chr2R_2880191_2880565;chr2R_2880626_2881652 51.47 35.71 45.45 60.00 60.00 75.00 66.67 53.33 47.06 46.15 NA 52.94 NA NA NA 35.71 36.36 NA NA 57.14 NA 78.57 53.33 46.15 76.92 75.00 72.22 82.14 61.54 NA 46.67 NA 47.37 50.00 NA 75.00 29.41 28.57 40.00 57.14 92.86 36.84 NA 40.00 50.00 50.00 NA 44.44 47.37 NA 53.85 60.00 60.00 NA 53.33 NA 50.00 50.00 K intron_retention CG15881,RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19799553_19799609 chr3L_19799552_19799553;chr3L_19799609_19799610 chr3L_19799406_19799552;chr3L_19799610_19799732 11.90 6.25 0.00 26.92 0.00 8.33 15.38 15.79 11.29 NA 22.22 16.22 0.00 16.00 11.43 15.56 8.70 5.41 13.79 8.51 10.53 0.00 8.33 16.28 27.78 23.81 15.38 NA 14.29 12.00 22.22 11.90 8.89 8.51 6.90 41.67 17.07 6.25 2.27 12.12 33.33 10.94 10.53 0.00 10.42 12.50 2.44 13.51 12.24 10.81 16.67 13.33 8.00 14.29 15.79 12.07 8.89 7.69 K jcn_only_AA CG31313,REI_chr3R_10392729_10393060,I_chr3R_10394322_10394381,RI_chr3R_10400799_10401492 chr3R - chr3R_10392729_10392886 chr3R_10392747_10392886 chr3R_10392887_10392898;chr3R_10392629_10392728 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA K alternative_donor Dredd,RI_chrX_529342_529426 chrX - chrX_528521_528596 chrX_528521_528578 chrX_528452_528520;chrX_528597_528617 97.06 NA 87.50 100.00 NA NA 90.00 100.00 90.91 NA NA 100.00 NA 85.71 NA 100.00 NA NA NA 90.91 NA 100.00 NA NA NA NA NA NA 100.00 85.71 92.86 100.00 100.00 100.00 NA NA NA NA NA 94.12 90.91 100.00 NA 92.31 100.00 91.67 NA 92.86 94.12 77.78 100.00 NA 100.00 NA 88.89 NA 100.00 100.00 K intron_retention CG3209,I_chr2R_19957751_19959513,RI_chr2R_19957766_19960227,I_chr2R_19959163_19959513 chr2R + chr2R_19957766_19959517 chr2R_19957765_19957766;chr2R_19959517_19959518 chr2R_19957666_19957765;chr2R_19959518_19959528 100.00 100.00 100.00 90.91 NA NA 100.00 100.00 94.44 NA 90.91 94.12 NA 100.00 100.00 100.00 NA NA 100.00 92.00 100.00 100.00 100.00 91.67 100.00 88.89 100.00 100.00 NA NA 76.92 NA 100.00 100.00 NA 88.89 91.67 100.00 92.31 100.00 NA 93.75 NA 90.91 NA NA 88.89 100.00 92.86 100.00 92.31 NA NA NA 100.00 80.00 NA NA K alternative_last_exon CG17490,RI_chr2L_22433057_22433102 chr2L + chr2L_22433057_22433102;chr2L_22433057_22440271 chr2L_22433057_22433109 chr2L_22440272_22441190 chr2L_22433110_22434093 chr2L_22432957_22433056 64.29 73.33 68.42 75.86 62.50 66.67 72.50 72.34 72.92 20.00 60.00 74.19 64.29 75.00 64.29 84.29 75.00 56.25 66.67 78.12 77.78 58.33 50.00 57.89 55.56 30.00 61.54 57.14 28.57 55.56 60.00 63.64 58.33 75.00 73.33 71.43 50.00 62.50 54.55 62.50 60.00 63.33 66.67 54.17 62.50 68.75 64.00 54.55 75.51 83.33 69.57 64.29 61.11 64.29 68.42 64.71 83.33 55.56 K alternative_acceptor CG30122,I_chr2R_14526123_14526189 chr2R - chr2R_14520489_14520558 chr2R_14520492_14520558 chr2R_14520559_14520629;chr2R_14519851_14520488 77.08 78.22 89.19 80.00 73.77 78.26 76.67 78.67 80.43 77.19 74.29 78.07 72.22 75.56 73.58 90.00 79.55 63.93 74.29 78.03 80.00 75.96 80.95 83.64 85.00 84.62 77.34 79.78 73.63 75.23 71.70 74.42 73.33 81.11 76.56 72.97 79.08 72.93 77.39 73.43 81.25 77.08 72.73 76.07 74.53 82.76 75.65 76.81 80.95 77.87 76.16 73.24 73.81 79.82 78.57 77.12 74.82 74.42 K alternative_acceptor CG2698,I_chr3R_3828169_3828941,I_chr3R_3828880_3828941,I_chr3R_3829483_3829715,I_chr3R_3830586_3830981 chr3R + chr3R_3829483_3829555;chr3R_3829483_3829709;chr3R_3829483_3829721 chr3R_3829483_3829697 chr3R_3829383_3829482;chr3R_3829722_3829815 34.15 34.15 40.48 36.51 34.62 35.71 42.86 38.24 32.39 50.00 46.43 39.13 44.12 29.73 45.10 38.33 36.00 47.83 49.02 29.63 39.39 26.19 34.38 26.32 22.73 33.33 43.06 40.74 32.26 33.33 23.19 35.90 10.53 33.85 28.95 31.91 30.00 34.09 35.71 27.85 28.57 38.64 35.00 36.21 23.08 36.51 42.42 29.23 39.19 22.03 30.16 32.50 21.43 28.95 34.62 30.77 28.00 31.91 K intron_retention simj,I_chr3L_10680263_10680313 chr3L + chr3L_10680263_10680337 chr3L_10680262_10680263;chr3L_10680337_10680338 chr3L_10680176_10680262;chr3L_10680338_10680413 0.00 0.00 0.00 2.15 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 1.49 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG4572,FI_chr3R_15689914_15690042 chr3R - chr3R_15689914_15689997;chr3R_15689914_15690046 chr3R_15689914_15690042 chr3R_15689814_15689913;chr3R_15690047_15690114 1.15 0.00 0.00 1.52 0.00 2.47 2.91 0.64 0.77 0.00 2.47 3.76 0.00 5.13 0.85 3.81 1.04 0.00 3.88 1.64 0.00 2.70 2.11 2.56 0.00 1.49 1.33 4.00 0.00 0.00 1.22 0.00 0.00 0.69 3.03 NA 2.82 1.28 1.15 0.00 NA 1.63 0.00 0.00 0.00 0.00 1.52 0.00 1.63 0.00 0.00 0.00 2.78 0.00 2.63 3.70 4.42 2.50 K intron_retention Hr39,I_chr2L_21256047_21256260 chr2L + chr2L_21257258_21257745 chr2L_21257257_21257258;chr2L_21257745_21257746 chr2L_21257112_21257257;chr2L_21257746_21258163 0.00 0.00 0.00 9.09 NA NA NA 0.00 0.00 NA NA 3.70 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA 3.33 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA N alternative_acceptor Doa,I_chr3R_24715823_24718923,I_chr3R_24747391_24747896 chr3R + chr3R_24747272_24747896 chr3R_24747272_24747336 chr3R_24747081_24747271;chr3R_24747897_24747996 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Nedd4,I_chr3L_17532828_17532882,I_chr3L_17532828_17533787,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17532837_17533790 chr3L_17532837_17533787 chr3L_17532667_17532836;chr3L_17533791_17533887 6.67 6.25 6.00 14.39 5.06 6.25 11.96 5.13 6.04 6.98 7.41 7.24 5.66 7.25 7.14 1.41 7.81 4.42 6.94 4.19 7.46 20.88 6.38 7.26 4.72 6.59 5.56 4.84 9.57 10.10 6.42 5.77 5.94 4.90 8.43 3.19 8.07 5.00 6.09 7.79 10.20 8.57 3.12 7.69 9.09 8.57 5.17 9.93 4.64 7.50 4.55 7.87 7.27 9.52 6.67 6.45 7.02 4.62 K jcn_only_AD wol chr2L - chr2L_8302333_8302523 chr2L_8302333_8302496 chr2L_8301936_8302332;chr2L_8302524_8302698 0.00 0.00 1.26 0.00 0.00 0.00 0.49 0.00 0.34 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.56 0.00 0.00 0.00 1.08 0.00 0.00 0.00 1.06 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.36 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.41 0.00 K jcn_only_AD lqfR,I_chr3R_18243588_18243830 chr3R + chr3R_18239002_18239082 chr3R_18239006_18239082 chr3R_18239083_18239179;chr3R_18238632_18239001 0.99 1.27 0.00 1.25 0.00 0.00 0.00 1.35 0.76 0.00 0.00 1.82 0.00 0.00 2.00 1.49 0.00 0.00 0.00 1.20 0.00 0.00 1.27 1.09 4.23 0.00 2.15 3.30 1.67 0.87 5.45 1.05 1.72 0.00 1.82 1.23 0.00 2.33 0.83 1.55 2.86 0.93 0.00 0.00 1.92 0.00 2.30 1.20 0.00 0.00 2.68 1.33 1.92 0.00 0.00 0.00 1.33 0.99 K jcn_only_AD CG6695 chr3R + chr3R_20483336_20484042;chr3R_20483291_20484042 chr3R_20483332_20484042 chr3R_20484043_20484133;chr3R_20483238_20483290 80.70 80.70 88.89 90.24 79.17 81.82 91.30 83.87 82.09 85.19 NA 79.49 NA 82.61 NA NA 82.61 80.00 NA 90.16 NA 73.26 87.65 68.33 65.38 NA 83.93 74.19 85.71 82.05 45.00 74.36 79.76 85.29 86.49 86.84 85.06 87.23 72.00 79.45 78.95 77.59 NA 69.01 75.76 73.02 78.57 77.19 86.96 81.16 79.31 78.57 84.62 73.13 86.67 76.56 82.76 79.66 K alternative_acceptor rdgA chrX + chrX_8910362_8911876;chrX_8910362_8911894 chrX_8910362_8911891 chrX_8910158_8910361;chrX_8911895_8912021 0.00 NA NA NA NA 0.00 NA NA 2.94 NA NA 6.67 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA 4.35 NA NA 12.50 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K jcn_only_AA CG2126,RI_chr3R_27601238_27601280,RI_chr3R_27602105_27602308 chr3R - chr3R_27601225_27601280 chr3R_27601238_27601280 chr3R_27601281_27601380;chr3R_27601138_27601224 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 1.33 0.00 0.00 2.08 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.44 NA 0.00 2.94 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 NA 0.00 2.56 0.00 1.82 4.00 0.00 0.00 NA 0.00 2.50 0.00 4.17 0.00 1.56 2.38 3.45 0.00 8.33 0.00 5.00 0.00 1.67 0.00 N cassette Ac76E,I_chr3L_19966672_19966735 chr3L + chr3L_19959557_19962181 chr3L_19959557_19959833;chr3L_19959962_19962181 chr3L_19959834_19959961 chr3L_19959464_19959556;chr3L_19962182_19962311 100.00 NA NA 78.12 NA NA NA 100.00 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA 100.00 NA NA 100.00 NA 100.00 NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 N alternative_acceptor CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789733_9789790;chr2L_9789694_9789790;chr2L_9789718_9789790;chr2L_9789751_9789790;chr2L_9789598_9789790 chr2L_9789740_9789790 chr2L_9789791_9789832;chr2L_9789594_9789597 8.00 6.67 8.57 8.14 9.52 8.70 5.77 10.17 8.22 10.53 12.50 9.80 9.09 6.45 8.82 10.00 8.33 4.17 6.90 6.15 6.67 13.79 7.84 8.33 12.90 5.56 5.88 8.70 6.90 7.69 8.89 9.52 6.67 7.84 7.69 0.00 5.71 12.50 8.11 6.56 10.71 5.66 7.69 12.12 5.00 6.06 8.00 6.38 12.70 4.35 5.26 6.90 10.53 0.00 10.81 9.09 13.64 8.00 N jcn_only_AD CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4987241_4987906;chr2L_4987298_4987906 chr2L_4987319_4987906 chr2L_4987907_4988048;chr2L_4987159_4987240 0.00 0.00 3.85 0.00 0.00 0.00 1.92 0.00 1.14 0.00 0.00 3.70 0.00 3.70 0.00 0.00 0.00 4.35 0.00 0.00 0.00 2.33 1.69 0.00 0.00 0.00 0.00 NA 0.00 0.00 1.89 3.03 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 3.64 3.23 3.51 0.00 5.36 2.22 0.00 0.00 0.00 4.55 0.00 2.33 3.85 0.00 0.00 K jcn_only_AD l(2)gl,I_chr2L_12929_13559,I_chr2L_12929_13682,I_chr2L_15712_16650,I_chr2L_17208_18260,I_chr2L_17213_21135,RI_chr2L_20021_20830,I_chr2L_20974_21065 chr2L - chr2L_12929_13559 chr2L_12929_13519 chr2L_12829_12928;chr2L_13560_13625 100.00 98.82 99.64 100.00 100.00 98.70 100.00 100.00 100.00 100.00 99.12 99.79 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.78 99.42 100.00 100.00 99.52 100.00 98.18 100.00 100.00 99.49 99.70 97.96 100.00 99.34 99.47 100.00 100.00 100.00 99.48 99.68 98.84 100.00 99.79 100.00 99.09 100.00 99.59 100.00 99.80 99.76 100.00 100.00 100.00 99.24 100.00 100.00 100.00 100.00 99.48 K intron_retention I_chr2L_9944682_9947179,CG13126,I_chr2L_9956225_9956299 chr2L - chr2L_9953048_9953109 chr2L_9953047_9953048;chr2L_9953109_9953110 chr2L_9952758_9953047;chr2L_9953110_9954223 0.00 0.00 0.00 3.85 NA 0.00 0.00 0.00 5.71 NA 0.00 0.00 0.00 NA 0.00 6.45 NA 0.00 0.00 5.00 NA 3.03 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 9.09 0.00 8.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 6.25 6.45 NA 2.86 0.00 4.35 0.00 0.00 0.00 N alternative_last_exon FI_chr3R_217971_221193,CG34112,I_chr3R_223384_223429 chr3R - chr3R_217971_219549 chr3R_219491_219549 chr3R_217902_217970 chr3R_219263_219490 chr3R_219550_220119 80.00 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA NA 50.00 100.00 NA NA NA NA NA NA NA NA 100.00 NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 55.56 NA NA 58.33 NA NA NA NA NA NA NA NA 36.36 K intron_retention Spargel,RI_chr3R_252723_254271,noncoding_14534 chr3R - chr3R_251487_251552 chr3R_251486_251487;chr3R_251552_251553 chr3R_249655_251486;chr3R_251553_252347 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rox8,I_chr3R_19872211_19872659,I_chr3R_19876189_19876240 chr3R - chr3R_19869868_19869918 chr3R_19869867_19869868;chr3R_19869918_19869919 chr3R_19869258_19869867;chr3R_19869919_19870012 0.00 4.35 0.00 20.00 NA 0.00 16.67 0.00 4.65 NA NA 7.69 NA NA 20.00 NA NA 0.00 NA 2.44 0.00 5.56 0.00 6.90 0.00 0.00 17.65 20.83 NA 0.00 13.33 NA 0.00 0.00 0.00 NA 4.88 0.00 5.71 NA NA 3.85 NA 0.00 0.00 0.00 2.78 0.00 0.00 4.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention Fps85D,I_chr3R_5194729_5194776,I_chr3R_5216796_5218450 chr3R - chr3R_5199598_5216607 chr3R_5199597_5199598;chr3R_5216607_5216608 chr3R_5199501_5199597;chr3R_5216608_5216795 0.00 1.54 0.00 0.00 0.00 0.00 0.00 1.23 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 1.92 0.87 0.00 0.00 0.00 0.00 0.00 0.00 6.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 3.57 0.00 1.04 0.00 0.00 0.00 2.38 0.00 0.00 2.63 0.00 0.00 0.00 0.00 2.56 0.00 0.00 K intron_retention BtbVII,I_chr3L_3150858_3150927,I_chr3L_3151185_3151263 chr3L + chr3L_3150154_3150214 chr3L_3150153_3150154;chr3L_3150214_3150215 chr3L_3149748_3150153;chr3L_3150215_3150842 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.59 2.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,RI_chr3R_27801288_27801517,I_chr3R_27801288_27801596 chr3R - chr3R_27784850_27798223,chr3R_27798276_27805244 chr3R_27784850_27795477,chr3R_27795508_27805244 chr3R_27798224_27798275 chr3R_27795478_27795507 chr3R_27784757_27784849;chr3R_27805245_27805341 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention raw,I_chr2L_8712599_8712673,I_chr2L_8735201_8735693 chr2L - chr2L_8735201_8735721 chr2L_8735200_8735201;chr2L_8735721_8735722 chr2L_8735101_8735200;chr2L_8735722_8735747 65.22 50.00 66.67 65.22 NA 88.89 92.31 63.64 61.90 NA NA NA NA 88.89 70.00 62.50 66.67 NA 71.43 60.87 NA 53.33 62.50 66.67 76.92 NA 50.00 60.00 NA NA 58.33 NA NA 86.67 72.73 NA 47.62 72.73 54.55 NA NA 62.50 NA 54.55 NA NA 60.00 60.00 66.67 73.33 72.22 69.23 NA NA 46.15 77.78 NA NA K intron_retention CG11177 chrX + chrX_13506747_13506808 chrX_13506746_13506747;chrX_13506808_13506809 chrX_13506294_13506746;chrX_13506809_13507262 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG17838,I_chr3R_16623576_16628011 chr3R + chr3R_16623576_16624036 chr3R_16623576_16624012 chr3R_16623476_16623575;chr3R_16624037_16624131 51.02 63.64 43.75 50.88 61.29 44.44 30.00 58.33 45.33 65.00 54.17 63.04 100.00 30.00 46.34 54.05 59.09 36.11 46.67 37.31 37.84 57.14 51.02 76.47 54.17 42.86 60.00 43.75 47.83 42.42 47.83 33.33 50.88 52.94 68.18 78.12 51.11 51.72 45.45 57.14 47.06 48.39 50.00 54.84 33.33 55.56 37.50 65.52 40.91 NA 54.55 57.89 53.33 NA 47.73 25.00 55.56 62.07 K jcn_only_AA TfIIA-L chr3R + chr3R_23080451_23080811 chr3R_23080451_23080737 chr3R_23080351_23080450 2.76 1.56 1.01 4.55 0.00 3.45 4.71 1.75 3.12 2.31 0.00 2.76 3.70 1.52 2.86 0.00 3.64 3.70 1.59 1.79 1.72 8.73 2.65 3.74 2.07 4.62 2.82 12.32 3.70 1.84 0.00 6.48 3.76 1.57 3.57 3.27 7.02 3.30 1.87 3.80 0.00 1.39 1.27 12.08 4.27 1.18 1.97 3.16 2.24 2.44 3.77 4.00 1.66 2.83 3.41 1.29 1.46 0.81 K alternative_donor nrv2,I_chr2L_6791842_6794492,I_chr2L_6793397_6794492,I_chr2L_6793405_6793916,I_chr2L_6793405_6794499,I_chr2L_6793684_6794492 chr2L - chr2L_6793405_6794328;chr2L_6793405_6794316;chr2L_6793405_6794551 chr2L_6793405_6794492 chr2L_6793305_6793404;chr2L_6794552_6794592 100.00 100.00 96.77 97.14 100.00 100.00 90.91 94.44 95.65 100.00 100.00 97.83 100.00 100.00 95.24 97.73 100.00 100.00 96.55 98.48 100.00 100.00 100.00 95.24 100.00 100.00 100.00 NA 100.00 100.00 100.00 96.97 95.89 91.89 100.00 100.00 100.00 100.00 100.00 98.59 94.12 95.83 100.00 100.00 100.00 97.14 100.00 96.40 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 95.58 K intron_retention drongo,I_chr2L_837379_847733 chr2L - chr2L_835106_835214 chr2L_835105_835106;chr2L_835214_835215 chr2L_834974_835105;chr2L_835215_835290 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention noncoding_5243,l(2)44DEa,I_chr2R_4553577_4562151,I_chr2R_4553817_4565934,I_chr2R_4554300_4563976,I_chr2R_4565692_4565934 chr2R + chr2R_4568227_4568289 chr2R_4568226_4568227;chr2R_4568289_4568290 chr2R_4568054_4568226;chr2R_4568290_4568553 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818597_7818970 chr3R_7818596_7818597;chr3R_7818970_7818971 chr3R_7818507_7818596;chr3R_7818971_7818995 46.55 28.57 30.77 25.64 28.00 51.85 83.08 45.16 42.75 44.00 55.10 50.00 47.62 36.36 46.67 43.28 42.65 31.71 41.07 56.63 45.00 15.91 48.39 56.52 61.11 25.00 61.36 63.33 57.89 41.67 39.13 60.00 28.57 46.99 61.11 71.43 43.59 55.56 53.57 36.62 58.33 40.78 45.61 42.86 50.00 44.12 57.14 33.33 42.72 55.88 48.84 50.00 60.00 38.46 46.55 51.85 50.00 33.33 K intron_retention CG31211 chr3R + chr3R_7776507_7776579 chr3R_7776506_7776507;chr3R_7776579_7776580 chr3R_7776149_7776506;chr3R_7776580_7776733 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 1.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9008 chr2L - chr2L_13775186_13775254 chr2L_13775185_13775186;chr2L_13775254_13775255 chr2L_13775152_13775185;chr2L_13775255_13775406 93.78 NA NA NA NA NA NA 88.89 90.00 NA NA 88.89 NA NA NA NA NA NA 90.91 100.00 NA 92.31 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 88.89 100.00 NA NA NA 100.00 90.00 100.00 NA 95.24 NA NA NA NA NA NA NA NA NA 100.00 K alternative_acceptor I_chr3L_3223943_3224313,CG11505 chr3L + chr3L_3232240_3232300 chr3L_3232240_3232297 chr3L_3231909_3232239;chr3L_3232301_3232406 78.26 84.62 88.89 81.03 75.86 81.82 92.00 78.21 85.00 75.00 77.78 75.00 82.05 73.68 85.71 82.35 77.50 87.10 77.78 67.21 78.26 82.93 83.72 87.50 95.00 77.50 82.05 91.30 81.82 73.08 77.50 66.67 76.09 76.81 67.86 88.00 84.62 86.67 79.31 79.55 76.92 73.42 84.00 83.33 72.73 75.00 73.68 65.00 81.25 76.92 83.78 76.00 70.00 77.78 86.36 75.00 78.57 66.67 K intron_retention smt3,I_chr2L_6967327_6967507 chr2L - chr2L_6967386_6967507 chr2L_6967385_6967386;chr2L_6967507_6967508 chr2L_6966677_6967385;chr2L_6967508_6967593 0.00 0.00 0.14 0.12 0.00 0.00 0.38 0.41 0.15 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.41 1.90 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.64 0.00 0.36 0.00 0.00 0.16 0.00 0.00 0.00 0.43 0.00 0.27 0.00 0.00 0.00 K intron_retention CG14646 chr3R + chr3R_216781_216832 chr3R_216780_216781;chr3R_216832_216833 chr3R_216400_216780;chr3R_216833_217833 0.00 0.00 3.12 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 3.33 0.00 8.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention AGO1,I_chr2R_9844856_9845327 chr2R - chr2R_9844856_9845466 chr2R_9844855_9844856;chr2R_9845466_9845467 chr2R_9844756_9844855;chr2R_9845467_9845645 7.41 NA 10.00 6.67 NA 7.41 8.70 2.78 15.38 NA NA 5.45 13.04 17.39 5.71 6.67 NA 10.71 0.00 11.29 0.00 19.05 12.50 NA 7.14 7.69 7.69 NA 6.90 3.33 7.41 NA 4.65 15.38 10.53 5.00 NA NA NA 22.58 NA 6.82 15.79 NA NA 10.53 NA 6.25 5.56 NA 14.29 5.56 NA NA 3.12 NA NA 6.67 K intron_retention CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_119236_119287 chr2L_119235_119236;chr2L_119287_119288 chr2L_119227_119235;chr2L_119288_119375 10.91 5.36 17.54 15.22 9.43 14.29 26.25 10.83 15.70 NA 17.14 15.79 19.70 8.57 10.26 10.24 10.53 20.00 14.93 13.91 5.88 15.71 30.00 11.67 20.00 15.22 14.67 20.00 30.30 10.87 10.91 6.67 5.71 11.58 6.38 35.82 10.61 7.81 10.91 8.79 26.32 15.53 13.73 7.14 6.67 9.43 6.56 2.70 15.83 12.73 10.23 7.14 9.52 8.33 11.90 8.89 9.26 5.71 K jcn_only_AA CG17683,I_chr2R_18774_18869 chr2R + chr2R_18774_18826;chr2R_18774_18851 chr2R_18774_18869 chr2R_18768_18773;chr2R_18870_18969 3.45 NA NA 4.00 NA NA 0.00 3.45 3.45 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA 4.17 NA NA NA NA 5.00 NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629585_2629921 chr3L_2629585_2629913 chr3L_2629141_2629584;chr3L_2629922_2630021 97.08 93.75 98.15 98.04 100.00 93.62 94.83 96.49 96.15 NA 100.00 93.75 93.94 96.36 100.00 99.23 100.00 NA 98.00 97.52 96.43 NA 100.00 NA NA 96.23 92.59 NA NA NA 97.06 100.00 100.00 100.00 91.30 NA 100.00 NA 100.00 96.00 NA 97.73 95.74 95.65 NA 93.94 NA 96.74 97.09 NA 100.00 NA NA NA 95.71 NA NA 100.00 K intron_retention Cam,I_chr2R_8161049_8161270 chr2R + chr2R_8147196_8147544 chr2R_8147195_8147196;chr2R_8147544_8147545 chr2R_8147127_8147195;chr2R_8147545_8147693 97.22 NA NA 88.89 NA NA 100.00 100.00 90.91 NA NA 91.67 NA NA 100.00 83.33 NA NA NA 100.00 NA 100.00 NA NA NA NA NA 100.00 92.86 NA NA 100.00 100.00 90.00 NA NA NA NA NA NA 94.44 90.91 NA NA NA 100.00 NA 100.00 90.91 NA NA NA NA NA NA NA NA 90.00 K intron_retention CG8142 chrX - chrX_17737540_17737601 chrX_17737539_17737540;chrX_17737601_17737602 chrX_17737373_17737539;chrX_17737602_17738469 3.60 2.67 3.90 6.25 3.57 2.50 5.26 3.26 4.76 0.00 11.43 2.36 2.22 3.51 3.33 5.21 0.00 5.56 1.56 3.65 0.00 4.26 2.06 1.06 4.17 5.21 6.86 5.26 12.50 0.00 6.10 3.61 3.45 3.60 4.55 1.41 0.00 2.35 1.72 5.07 5.56 3.48 3.77 0.00 9.41 3.87 6.72 4.30 3.60 3.81 4.17 0.00 3.60 2.52 5.88 2.70 4.35 3.36 K intron_retention Mct1 chrX + chrX_2098743_2098797 chrX_2098742_2098743;chrX_2098797_2098798 chrX_2098542_2098742;chrX_2098798_2099408 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 15.38 0.00 0.00 NA NA 0.00 3.57 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 K alternative_acceptor dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21308996_21310000;chr2L_21309092_21310000 chr2L_21309084_21310000 chr2L_21310001_21310009;chr2L_21308992_21308995 11.76 NA NA 12.50 NA NA 15.38 18.18 11.76 NA NA 15.38 NA NA NA 6.25 33.33 NA 12.50 0.00 NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA 0.00 15.38 NA NA NA NA NA NA NA 6.67 NA NA NA 0.00 NA 13.33 7.14 NA NA NA NA NA 14.29 NA NA 0.00 K intron_retention Adgf-A,Msi,F_chr3L_17749926_17757161 chr3L - chr3L_17747526_17757161 chr3L_17747525_17747526;chr3L_17757161_17757162 chr3L_17746567_17747525;chr3L_17757162_17757241 0.69 1.67 1.06 1.90 1.82 0.00 1.29 0.00 0.60 0.00 1.50 1.18 1.82 0.92 0.00 0.97 0.00 0.00 0.00 0.93 1.30 0.63 2.06 0.69 1.99 0.59 1.57 2.06 0.23 0.00 0.00 0.00 0.81 1.15 0.00 1.56 0.72 1.68 1.23 0.00 0.48 0.54 0.00 0.97 0.31 0.44 0.00 0.89 1.86 0.00 1.49 0.56 0.47 0.00 0.83 1.59 0.00 0.10 K alternative_donor Cdk4,RI_chr2R_12471503_12471656 chr2R + chr2R_12467202_12468346;chr2R_12467432_12468346;chr2R_12467241_12468346;chr2R_12467275_12468346;chr2R_12467225_12468346;chr2R_12467227_12468346;chr2R_12467261_12468346;chr2R_12467039_12468346 chr2R_12467474_12468346 chr2R_12468347_12468520;chr2R_12467030_12467038 3.85 0.00 0.00 3.85 0.00 7.69 6.25 3.33 2.17 0.00 6.67 7.69 0.00 6.25 0.00 3.12 0.00 12.50 4.55 4.08 7.14 7.14 6.67 0.00 12.50 6.67 4.76 0.00 8.33 11.11 5.56 0.00 7.14 2.94 10.00 8.33 0.00 9.09 0.00 5.88 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 4.76 6.67 6.25 0.00 0.00 0.00 5.56 0.00 0.00 8.00 K intron_retention CG31122,CG10864 chr3R - chr3R_14235594_14238483 chr3R_14235593_14235594;chr3R_14238483_14238484 chr3R_14235220_14235593;chr3R_14238484_14238602 0.00 0.00 4.17 3.92 0.00 1.92 5.00 0.00 3.28 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 4.88 0.00 3.06 0.00 0.00 1.59 0.00 2.04 0.00 0.00 6.15 1.83 3.70 0.00 0.00 1.37 0.00 0.00 1.92 2.27 0.00 0.00 2.36 0.00 2.53 3.23 0.00 0.00 1.18 2.70 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG18432,CG34194,cyp33,I_chr2R_13433672_13433749 chr2R + chr2R_13432126_13432326 chr2R_13432125_13432126;chr2R_13432326_13432327 chr2R_13431697_13432125;chr2R_13432327_13432552 12.90 8.33 2.38 19.51 3.12 6.25 17.74 8.51 8.06 14.29 7.41 13.21 NA 10.00 8.11 27.50 4.55 9.09 8.33 11.48 12.00 NA 35.48 6.82 20.00 5.71 16.67 19.05 23.08 NA 6.56 26.32 25.00 7.27 10.53 38.46 15.15 15.00 11.63 15.38 11.76 12.90 0.00 21.74 13.04 14.29 15.15 24.00 3.70 13.64 19.35 13.79 NA 11.54 12.82 15.15 6.67 25.00 K jcn_only_AA CG11739,REI_chr3R_205547_205633,RI_chr3R_205772_205830,I_chr3R_207254_207600 chr3R + chr3R_205547_205649 chr3R_205547_205633 chr3R_205447_205546;chr3R_205650_205733 0.00 1.02 0.00 0.00 1.08 0.00 0.00 0.00 0.47 0.00 0.00 0.00 1.33 0.00 0.64 0.00 0.00 0.92 1.43 0.81 2.13 0.00 0.00 0.91 0.00 1.82 0.00 0.00 1.05 1.49 2.44 0.00 1.32 1.30 1.28 3.33 0.00 0.00 0.00 1.05 1.33 0.50 0.00 0.00 0.00 0.54 0.00 1.20 1.88 0.00 0.00 0.00 0.00 1.28 2.14 0.93 0.00 0.49 K jcn_only_AA wun,RI_chr2R_5291964_5300729,I_chr2R_5297151_5300729,I_chr2R_5297159_5300813 chr2R - chr2R_5291964_5300729 chr2R_5297159_5300729 chr2R_5300730_5300829 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor RpS3A,I_chr4_87364_87465,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87533_87673;chr4_87533_87769;chr4_87533_87757 chr4_87533_87717 chr4_87466_87532;chr4_87770_87817 35.98 40.26 36.50 33.61 41.14 35.77 30.79 16.46 43.94 42.16 36.34 26.35 36.33 30.27 26.76 22.23 NA 30.97 27.55 20.20 37.20 32.05 24.89 32.75 41.51 34.78 39.30 31.86 42.54 37.15 56.39 47.80 70.00 38.26 40.32 NA NA 21.93 42.55 43.91 57.34 28.67 20.89 NA 56.53 50.61 40.15 37.22 25.92 48.75 28.52 NA 35.07 36.19 34.33 25.43 31.33 30.97 K alternative_donor Axs,RI_chrX_16575605_16575790,RI_chrX_16575870_16575942 chrX - chrX_16575605_16575942 chrX_16575605_16575790 chrX_16575505_16575604;chrX_16575943_16576042 0.00 0.00 0.00 0.00 0.00 6.67 0.00 2.78 1.92 NA 0.00 3.23 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 2.94 0.00 NA 0.00 5.56 0.00 4.55 0.00 0.00 8.33 NA 0.00 6.67 4.76 0.00 0.00 0.00 0.00 7.14 0.00 NA 0.00 5.56 4.35 0.00 NA 2.63 3.85 3.12 0.00 0.00 6.67 0.00 0.00 0.00 NA N multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2813977;chr2R_2814097_2814174;chr2R_2814327_2816013;chr2R_2816342_2816577;chr2R_2816779_2817753 chr2R_2813978_2814096;chr2R_2814175_2814326;chr2R_2816014_2816341;chr2R_2816578_2816778 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CSN3 chr3L - chr3L_20832441_20832497 chr3L_20832440_20832441;chr3L_20832497_20832498 chr3L_20831949_20832440;chr3L_20832498_20832565 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Hrb98DE,RI_chr3R_24429041_24431183 chr3R + chr3R_24428670_24428733 chr3R_24428669_24428670;chr3R_24428733_24428734 chr3R_24428494_24428669;chr3R_24428734_24429040 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 2.93 1.43 0.48 0.00 0.00 0.19 0.21 0.00 0.00 0.00 0.34 0.00 0.00 0.35 0.21 0.00 0.00 0.00 0.00 0.00 0.82 0.16 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.27 0.00 0.46 K intron_retention shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9787955_9788941 chr2R_9787954_9787955;chr2R_9788941_9788942 chr2R_9787871_9787954;chr2R_9788942_9789041 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 NA 0.00 3.45 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K intron_retention Gel,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_61871_62274 chr3R_61870_61871;chr3R_62274_62275 chr3R_61844_61870;chr3R_62275_62526 26.86 NA 25.00 NA NA NA NA NA 35.71 NA NA 28.57 NA 14.29 NA 34.62 NA NA NA 20.51 30.77 NA NA NA NA NA NA NA NA NA NA NA NA 27.78 NA NA NA NA NA NA NA 30.43 NA NA NA 14.29 NA NA 25.93 NA NA NA NA NA NA NA NA 25.00 K intron_retention Aldolase,I_chr3R_22083764_22086684 chr3R - chr3R_22081154_22082654 chr3R_22081153_22081154;chr3R_22082654_22082655 chr3R_22080805_22081153;chr3R_22082655_22082854 1.26 0.83 1.49 1.26 0.69 0.91 2.47 1.93 1.53 1.44 0.39 1.66 1.43 1.15 1.33 2.23 1.03 0.83 1.93 1.31 0.99 1.54 0.99 0.84 0.86 1.75 1.03 1.87 8.17 1.05 0.87 2.37 2.23 0.79 1.13 1.37 0.92 0.65 1.00 1.80 2.39 1.11 2.48 1.38 0.82 1.15 0.92 2.30 1.46 0.70 1.36 1.44 0.78 0.96 1.04 1.11 1.30 1.74 K intron_retention CG5522 chr2R + chr2R_12677772_12678243 chr2R_12677771_12677772;chr2R_12678243_12678244 chr2R_12677716_12677771;chr2R_12678244_12679955 17.77 NA NA NA NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD exd chrX + chrX_15888639_15888717 chrX_15888648_15888717 chrX_15888718_15890040;chrX_15888380_15888638 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.30 0.00 0.00 0.00 0.94 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 K intron_retention debcl,I_chr2R_2539027_2539493 chr2R + chr2R_2537084_2539493 chr2R_2537083_2537084;chr2R_2539493_2539494 chr2R_2536177_2537083;chr2R_2539494_2539593 0.00 0.89 0.00 3.10 0.00 0.00 0.98 0.00 3.02 0.00 0.00 1.76 0.00 0.00 0.87 0.00 0.00 0.00 0.91 0.00 1.06 1.77 0.00 0.00 0.00 0.00 3.77 2.63 1.98 0.80 0.00 0.00 1.43 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.83 0.00 1.15 0.00 K intron_retention Rm62 chr3R - chr3R_1827083_1827279 chr3R_1827082_1827083;chr3R_1827279_1827280 chr3R_1826149_1827082;chr3R_1827280_1827458 0.17 0.00 0.44 0.00 0.26 0.64 0.65 0.47 0.58 0.00 0.62 0.38 0.93 0.51 0.17 0.45 0.51 0.46 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.41 0.41 0.43 0.00 0.00 0.45 0.00 0.00 0.57 0.00 0.28 0.00 0.00 0.00 0.17 0.00 0.37 0.00 0.00 0.31 0.00 0.20 0.00 0.41 0.36 0.16 0.00 0.00 0.00 0.35 1.01 0.00 0.00 K alternative_acceptor bwa,I_chr2L_20069515_20073377,I_chr2L_20073310_20073377 chr2L + chr2L_20069515_20073377 chr2L_20069515_20072353 chr2L_20069415_20069514;chr2L_20073378_20073477 97.44 100.00 96.77 79.31 100.00 100.00 97.96 92.06 98.84 95.45 96.00 93.85 100.00 94.29 92.11 100.00 96.30 90.91 91.43 98.59 95.65 96.59 98.36 96.15 100.00 96.30 97.67 97.44 97.50 100.00 96.77 96.30 96.43 98.18 96.88 88.10 97.96 97.44 97.92 98.15 96.67 98.63 96.00 97.78 97.50 94.23 98.08 93.94 98.25 98.51 100.00 96.67 100.00 97.30 95.24 97.50 98.00 100.00 K intron_retention l(2)s5379,I_chr2L_2229179_2229265 chr2L + chr2L_2229394_2229456 chr2L_2229393_2229394;chr2L_2229456_2229457 chr2L_2229266_2229393;chr2L_2229457_2229575 1.96 2.31 0.00 3.05 3.12 4.04 2.59 0.85 2.61 0.00 3.45 2.27 6.90 3.19 2.07 2.56 2.83 3.17 4.41 2.66 1.53 1.37 0.00 0.00 0.00 3.70 3.00 2.02 0.00 0.00 1.57 1.64 0.00 1.03 0.00 0.00 0.00 2.27 2.56 1.60 0.00 2.95 2.02 0.00 1.44 2.12 1.60 0.88 4.11 0.00 0.75 1.96 0.85 2.15 2.78 0.00 3.85 0.33 K intron_retention Ddip2,I_chr3L_252498_252538,I_chr3L_252776_253313 chr3L - chr3L_252482_252538 chr3L_252481_252482;chr3L_252538_252539 chr3L_252398_252481;chr3L_252539_252638 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 11.11 0.00 0.00 1.59 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Cp110,I_chrX_21890195_21895316,I_chrX_21900456_21904601 chrX + chrX_21884587_21884677 chrX_21884587_21884674 chrX_21884512_21884586;chrX_21884678_21884730 22.73 22.73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 21.74 NA NA NA NA NA NA NA NA NA NA 46.43 NA NA NA NA NA NA NA NA NA K alternative_donor sax,CG1882 chr2R + chr2R_3700498_3700785;chr2R_3700197_3700785 chr2R_3700238_3700785 chr2R_3700786_3702250;chr2R_3700011_3700196 0.71 0.00 0.00 1.14 0.00 1.79 0.00 1.08 0.89 1.39 2.17 0.85 2.56 0.00 0.00 1.39 0.00 1.96 1.75 0.66 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.63 0.00 0.99 1.43 0.00 1.28 0.00 0.00 0.00 0.00 0.70 0.71 0.00 0.89 2.44 0.69 0.96 0.82 0.00 0.93 0.92 2.00 0.89 1.41 0.00 0.00 1.54 1.19 1.04 1.27 K intron_retention ZnT63C chr3L + chr3L_3303837_3304601 chr3L_3303836_3303837;chr3L_3304601_3304602 chr3L_3303742_3303836;chr3L_3304602_3304665 82.50 84.21 81.40 90.00 72.00 91.89 82.50 80.43 74.55 83.33 84.00 87.10 81.82 86.21 92.31 92.98 84.00 72.73 94.44 83.33 85.19 57.14 62.07 50.00 80.00 89.29 58.82 75.00 97.50 96.43 80.00 81.82 96.97 83.33 78.12 93.10 47.83 70.59 72.22 88.14 82.76 86.96 83.87 75.00 69.70 82.93 62.50 95.77 87.78 64.29 73.53 62.50 76.47 75.00 90.24 62.50 52.94 96.08 K intron_retention hppy,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15113292_15113351 chr2R_15113291_15113292;chr2R_15113351_15113352 chr2R_15113070_15113291;chr2R_15113352_15113478 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 1.54 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.65 0.00 0.00 0.00 0.88 2.27 0.00 2.14 2.88 3.57 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 K intron_retention Trf4-1,I_chrX_8459198_8459266 chrX + chrX_8460090_8460329 chrX_8460089_8460090;chrX_8460329_8460330 chrX_8459410_8460089;chrX_8460330_8461303 19.61 18.57 15.94 18.99 12.99 19.61 22.06 18.42 20.23 6.56 22.03 16.78 5.17 20.00 16.87 28.30 12.12 20.00 19.72 25.68 19.30 35.44 17.86 19.48 30.77 21.43 30.00 32.79 35.59 24.64 19.67 30.61 24.27 15.79 19.30 34.78 13.60 12.20 14.29 18.67 33.33 17.16 21.74 11.69 20.00 21.88 20.93 28.71 21.70 18.03 17.86 14.00 18.87 27.59 19.23 19.30 14.81 25.76 K cassette CG6767,CREI_chr3L_9679564_9687332,I_chr3L_9682549_9689638,I_chr3L_9682607_9687332 chr3L - chr3L_9682549_9689638 chr3L_9682549_9687332;chr3L_9687559_9689638 chr3L_9687333_9687558 chr3L_9682507_9682548;chr3L_9689639_9689685 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.55 97.06 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 K alternative_donor Stim chrX - chrX_15833274_15834432 chrX_15833274_15834256 chrX_15833070_15833273;chrX_15834433_15834462 4.17 NA 7.69 5.71 NA 5.00 2.00 2.27 4.17 NA NA 8.11 5.71 0.00 0.00 6.00 0.00 NA 2.50 6.82 NA 0.00 0.00 NA NA 3.70 NA NA 6.67 NA 7.32 NA NA 4.17 NA NA NA NA NA NA NA 2.22 4.00 NA 0.00 9.09 NA 6.25 5.41 NA NA 9.09 NA NA 6.90 NA NA 3.23 K intron_retention Lasp,I_chr3L_16671761_16673911,I_chr3L_16671780_16671907,R_chr3L_16672970_16673911,RI_chr3L_16674471_16704042 chr3L - chr3L_16671761_16671907 chr3L_16671760_16671761;chr3L_16671907_16671908 chr3L_16671680_16671760;chr3L_16671908_16672007 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 1.01 0.00 0.72 1.40 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.53 0.00 0.81 1.16 0.40 0.57 0.00 0.00 0.00 0.71 0.00 0.00 0.00 K intron_retention MB8.chr3R.pasa.66,CG1091,I_chr3R_2909743_2909904,I_chr3R_2910029_2910096,RI_chr3R_2910490_2910686,RI_chr3R_2911041_2911135,RI_chr3R_2946518_2946663 chr3R - chr3R_2909743_2909904 chr3R_2909742_2909743;chr3R_2909904_2909905 chr3R_2909729_2909742;chr3R_2909905_2910004 100.00 96.30 100.00 100.00 100.00 95.83 95.83 100.00 98.33 100.00 100.00 100.00 100.00 95.83 100.00 96.88 100.00 100.00 100.00 100.00 100.00 94.74 97.30 97.44 95.65 100.00 97.78 93.75 100.00 93.33 100.00 90.91 94.12 97.22 100.00 100.00 100.00 100.00 97.44 97.37 100.00 97.30 95.83 100.00 100.00 96.43 100.00 94.12 100.00 97.50 97.22 100.00 96.67 100.00 100.00 100.00 97.96 100.00 K intron_retention CG14235,noncoding_24847,CG18809,noncoding_24848 chrX - chrX_19635199_19638294 chrX_19635198_19635199;chrX_19638294_19638295 chrX_19634765_19635198;chrX_19638295_19638317 5.31 5.75 5.98 6.98 5.41 2.58 5.10 4.76 4.56 2.90 3.47 6.20 4.35 5.30 5.79 7.22 5.26 5.75 5.59 7.74 3.51 6.99 6.15 4.65 2.33 4.35 2.72 4.65 11.36 7.14 4.81 5.77 16.67 6.10 7.41 7.35 4.08 2.86 4.98 3.09 8.89 4.60 5.31 3.50 6.00 8.87 4.22 10.45 4.66 8.65 6.67 3.81 5.95 7.87 3.31 4.89 3.11 5.71 K cassette KCNQ,I_chr2R_6034329_6034563,I_chr2R_6039928_6040408 chr2R - chr2R_6033949_6034563 chr2R_6033949_6034212;chr2R_6034329_6034563 chr2R_6034213_6034328 chr2R_6033734_6033948;chr2R_6034564_6034663 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA 85.71 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 88.89 85.71 NA NA NA NA NA NA NA 100.00 K intron_retention CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1527382_1527438 chr3L_1527381_1527382;chr3L_1527438_1527439 chr3L_1527228_1527381;chr3L_1527439_1527584 0.00 0.00 0.00 5.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 3.70 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention exo84 chr3R - chr3R_21875838_21875892 chr3R_21875837_21875838;chr3R_21875892_21875893 chr3R_21875451_21875837;chr3R_21875893_21876422 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7332,I_chrX_18779996_18780073,RI_chrX_18780777_18780878 chrX + chrX_18781029_18781085 chrX_18781028_18781029;chrX_18781085_18781086 chrX_18780879_18781028;chrX_18781086_18781245 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 NA 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 1.27 2.38 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 K intron_retention CG33558,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2816779_2817327 chr2R_2816778_2816779;chr2R_2817327_2817328 chr2R_2816679_2816778;chr2R_2817328_2817427 3.99 5.00 7.14 6.98 25.00 13.04 12.50 17.65 6.02 0.00 0.00 6.67 0.00 4.17 8.89 6.45 5.71 15.00 6.25 10.00 0.00 3.45 7.81 6.25 5.26 0.00 13.33 NA 0.00 3.03 0.00 2.70 2.82 3.57 6.25 2.22 3.81 0.00 4.35 3.70 0.00 2.56 7.14 4.65 0.00 2.78 0.00 6.78 6.12 2.25 4.88 0.00 2.78 1.92 16.67 0.00 0.00 3.45 K jcn_only_AD RpL31,CG1827 chr2R + chr2R_5474789_5474951;chr2R_5474734_5474951 chr2R_5474844_5474951 chr2R_5474952_5475211;chr2R_5474727_5474733 1.98 1.55 4.10 0.89 2.42 1.25 6.17 1.18 2.13 2.94 1.72 3.35 4.03 5.65 0.92 4.15 1.76 2.20 2.09 1.55 1.40 0.50 3.26 1.98 0.46 1.72 12.24 0.35 6.98 1.06 5.43 0.33 0.48 1.90 1.84 4.43 5.79 5.16 5.71 0.45 2.64 0.82 1.21 1.53 0.49 3.11 5.84 2.12 2.50 1.56 5.68 1.50 1.72 15.94 1.27 5.90 3.56 1.63 K intron_retention Moe,I_chrX_8774434_8791759 chrX - chrX_8768933_8769126 chrX_8768932_8768933;chrX_8769126_8769127 chrX_8768545_8768932;chrX_8769127_8769770 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.44 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.11 0.00 0.00 0.11 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Smg5,I_chr2L_13903932_13904208 chr2L - chr2L_13903932_13904397 chr2L_13903932_13904379 chr2L_13903832_13903931;chr2L_13904398_13904515 0.00 0.00 1.54 0.96 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.82 3.85 0.00 1.82 0.00 0.43 0.00 1.96 0.00 0.00 2.94 2.22 NA 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 K intron_retention CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525393_1526333 chr3L_1525392_1525393;chr3L_1526333_1526334 chr3L_1525293_1525392;chr3L_1526334_1526398 91.67 91.67 92.31 100.00 100.00 93.75 83.33 93.33 96.67 NA 68.75 36.00 100.00 100.00 92.86 95.00 91.67 92.31 100.00 77.42 87.50 73.33 100.00 91.67 81.82 NA 88.89 NA 90.91 90.00 100.00 NA 90.00 90.91 87.50 80.00 92.31 NA 90.00 88.46 81.82 90.32 100.00 94.74 NA 90.00 92.31 94.12 92.59 83.33 89.47 90.00 100.00 NA 95.24 87.50 90.91 92.31 K jcn_only_AA Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21124522_21125346 chr2L_21124522_21125316 chr2L_21124443_21124521;chr2L_21125347_21125439 35.22 46.03 28.40 47.31 45.16 23.81 17.95 28.57 40.74 32.00 29.31 62.88 40.62 44.12 29.33 24.27 33.93 26.98 46.34 36.30 18.84 44.12 36.78 32.39 40.35 48.57 30.34 46.55 45.45 45.00 28.99 NA 34.48 27.10 30.61 49.28 33.73 47.30 39.36 35.96 41.94 38.58 28.30 45.78 41.67 29.82 46.67 44.12 25.79 23.08 41.49 32.65 16.67 54.17 29.33 13.79 26.32 20.51 K intron_retention CG16908,Rpt3R chr3R - chr3R_5578353_5578401 chr3R_5578352_5578353;chr3R_5578401_5578402 chr3R_5577277_5578352;chr3R_5578402_5579502 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 7.69 NA NA NA NA NA 0.00 NA NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 K alternative_donor CG17385,I_chr2R_10298790_10298843 chr2R - chr2R_10298790_10298843;chr2R_10298790_10298847 chr2R_10298790_10298841 chr2R_10298690_10298789;chr2R_10298848_10298916 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 K intron_retention Mlf,noncoding_7111,CE_chr2R_11826384_11826741,CEI_chr2R_11826763_11827279 chr2R - chr2R_11826484_11826541 chr2R_11826483_11826484;chr2R_11826541_11826542 chr2R_11825952_11826483;chr2R_11826542_11826762 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 1.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 3.24 4.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.56 0.00 0.41 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.50 0.00 0.00 K jcn_only_AD l(2)k05819,I_chr2L_4396173_4396266 chr2L + chr2L_4396173_4396809;chr2L_4396407_4396809 chr2L_4396128_4396809 chr2L_4396810_4396906;chr2L_4396073_4396127 47.62 44.79 45.45 31.03 41.80 46.46 35.60 45.22 47.30 51.72 25.00 64.80 53.12 33.00 36.89 40.34 48.65 32.29 25.23 43.35 38.68 53.66 50.00 41.59 53.06 12.93 42.06 14.77 55.14 54.93 49.53 27.45 61.11 43.01 51.52 48.15 51.49 64.76 56.02 47.83 56.76 47.62 34.41 56.76 47.73 48.33 45.83 55.38 42.27 33.33 53.10 44.83 67.39 62.50 36.84 63.46 60.00 68.75 K intron_retention Sap47 chr3R + chr3R_11779978_11780304 chr3R_11779977_11779978;chr3R_11780304_11780305 chr3R_11779880_11779977;chr3R_11780305_11780405 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 3.23 0.00 3.45 1.89 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA 11.76 0.00 N jcn_only_AD unc-5,E_chr2R_11238100_11240757,I_chr2R_11252444_11252570 chr2R + chr2R_11238100_11244325 chr2R_11243996_11244325 chr2R_11244326_11244514;chr2R_11238000_11238099 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 23.53 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 31.75 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 N alternative_donor RpS27A chr2L + chr2L_10410052_10410240;chr2L_10410157_10410240 chr2L_10410169_10410240 chr2L_10410241_10410467;chr2L_10409711_10410051 0.17 0.14 0.15 0.40 0.10 0.11 0.27 0.32 0.14 0.38 0.08 0.23 0.17 0.18 0.14 0.28 0.18 0.11 0.22 0.15 0.09 0.08 0.13 0.16 0.12 0.07 0.41 0.79 0.24 0.23 0.23 0.20 0.24 0.27 0.16 0.19 0.14 0.14 0.08 0.22 0.16 0.16 0.20 0.15 0.14 0.21 0.10 0.25 0.41 0.24 0.18 0.17 0.23 0.16 0.15 0.17 0.28 0.34 K intron_retention CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25318474_25318971 chr3R_25318473_25318474;chr3R_25318971_25318972 chr3R_25318374_25318473;chr3R_25318972_25319100 22.73 NA 31.25 21.43 NA 35.71 13.64 20.83 24.14 NA NA 29.03 NA NA 10.53 22.73 25.00 NA 25.00 26.47 NA 14.29 22.73 13.33 NA 41.67 9.52 NA 7.69 NA 11.11 18.75 26.67 23.81 22.73 21.05 27.27 NA 26.32 28.12 NA 21.88 NA NA 16.67 10.53 14.29 28.57 28.57 NA 41.67 NA NA 30.77 22.22 NA 20.00 NA K intron_retention mRpS26 chr3L + chr3L_18099971_18100066 chr3L_18099970_18099971;chr3L_18100066_18100067 chr3L_18099672_18099970;chr3L_18100067_18100527 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 K intron_retention I_chr3L_212783_212843,Kaz1-ORFB,Kaz1-ORFA_Kaz1-ORFB,CG13877 chr3L + chr3L_218196_218279 chr3L_218195_218196;chr3L_218279_218280 chr3L_218127_218195;chr3L_218280_218658 3.45 0.00 NA NA NA NA 5.26 6.90 0.00 NA NA 6.67 NA 0.00 0.00 13.33 0.00 0.00 11.11 6.25 NA NA NA 0.00 NA 0.00 6.67 NA NA 16.67 0.00 NA NA 0.00 NA NA NA NA NA 11.11 NA 7.41 0.00 NA NA 6.67 6.25 NA 5.00 0.00 0.00 NA NA 0.00 NA 11.11 3.45 NA K intron_retention CG11347,I_chr3L_4412551_4417819 chr3L + chr3L_4419263_4419428 chr3L_4419262_4419263;chr3L_4419428_4419429 chr3L_4419184_4419262;chr3L_4419429_4419663 5.00 NA NA NA NA NA NA NA 10.53 NA NA 0.00 NA NA NA 0.00 NA NA NA 5.00 NA NA NA NA NA NA 13.33 0.00 NA NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA 0.00 NA 6.67 NA NA NA NA NA NA NA NA NA K intron_retention CPTI,I_chr2R_6360956_6365128 chr2R - chr2R_6357391_6357450 chr2R_6357390_6357391;chr2R_6357450_6357451 chr2R_6356978_6357390;chr2R_6357451_6357810 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 1.61 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG2926,I_chr3R_1410401_1410501,I_chr3R_1410558_1410893,I_chr3R_1410841_1410893 chr3R - chr3R_1410401_1410893 chr3R_1410401_1410501 chr3R_1410301_1410400;chr3R_1410894_1410993 1.54 2.78 0.00 7.58 0.00 0.00 1.75 1.56 2.68 10.00 0.00 0.00 2.70 0.00 0.00 0.00 2.78 0.00 0.00 4.00 0.00 3.96 2.47 1.54 0.00 0.00 0.00 3.70 3.92 1.54 0.00 0.00 7.32 0.00 3.45 1.82 2.82 0.00 2.17 0.00 7.32 1.28 3.12 0.00 8.82 3.45 NA 7.27 0.00 NA 5.45 5.41 0.00 NA 0.00 0.00 NA 0.00 K intron_retention CG3008,CG15625 chr2L + chr2L_4883588_4883645 chr2L_4883587_4883588;chr2L_4883645_4883646 chr2L_4883520_4883587;chr2L_4883646_4884339 2.18 0.00 3.61 6.38 9.46 0.00 1.65 3.15 2.07 0.00 0.00 3.64 0.00 1.59 2.33 1.79 3.03 6.41 1.45 2.50 2.70 3.69 2.66 1.75 5.16 8.00 4.62 3.34 6.28 2.19 0.00 2.11 2.03 1.96 0.00 4.00 1.95 1.10 2.06 0.00 2.06 3.80 3.57 2.18 3.85 0.00 0.94 0.77 3.57 2.92 1.85 2.54 2.60 1.01 5.21 0.00 1.48 4.92 K intron_retention Nop60B,RI_chr2R_20063248_20063455,I_chr2R_20063248_20063949,snoRNA:Psi18S-1820,F_chr2R_20073291_20073744 chr2R + chr2R_20063248_20063439 chr2R_20063247_20063248;chr2R_20063439_20063440 chr2R_20063148_20063247;chr2R_20063440_20063714 0.96 0.96 1.20 1.30 0.47 0.87 2.65 0.66 1.15 1.15 2.63 1.19 0.50 0.00 1.82 0.76 1.43 0.82 0.95 0.97 1.05 0.00 1.71 0.99 1.50 0.00 0.81 0.98 0.00 0.00 1.05 1.30 0.00 1.56 1.26 0.77 0.19 0.82 1.11 1.03 1.06 1.03 1.08 0.70 0.67 0.28 0.66 0.00 1.38 1.41 0.93 1.18 0.66 0.63 1.15 0.00 0.66 0.40 K intron_retention Vps20 chr2R + chr2R_18496124_18496188 chr2R_18496123_18496124;chr2R_18496188_18496189 chr2R_18496038_18496123;chr2R_18496189_18496298 0.79 0.00 0.00 0.00 0.00 0.00 0.00 1.26 0.62 0.00 3.39 1.00 1.69 1.47 0.00 0.00 0.00 0.00 2.94 0.75 0.00 2.20 0.82 1.05 1.32 2.13 3.45 0.00 9.09 0.00 4.35 0.82 0.00 0.72 0.00 0.66 0.88 0.00 1.35 2.05 4.21 1.61 0.00 0.00 0.00 1.41 0.79 0.00 1.55 1.45 1.40 0.00 0.87 0.00 2.27 0.00 0.96 1.57 K alternative_donor CG3632,RI_chrX_16195880_16196242 chrX + chrX_16190824_16191682;chrX_16190941_16191682 chrX_16190917_16191682 chrX_16191683_16191751;chrX_16190763_16190823 37.50 37.50 36.36 38.46 40.00 37.50 31.58 40.91 21.74 NA 33.33 47.37 37.50 37.50 58.33 35.00 40.00 33.33 50.00 35.00 22.22 22.22 25.00 37.50 28.57 50.00 37.50 28.57 57.14 28.57 22.22 NA 40.00 47.37 42.86 33.33 14.29 50.00 50.00 42.86 NA 41.18 57.14 25.00 NA 28.57 25.00 22.22 40.00 50.00 45.45 37.50 40.00 NA 33.33 40.00 NA NA K alternative_acceptor Nop60B,AT25722,F_chr2R_20073291_20073744,snoRNA:Or-CD9a,snmRNA:60Ca chr2R + chr2R_20073291_20073744 chr2R_20073291_20073510 chr2R_20073238_20073290;chr2R_20073745_20073751 100.00 NA NA 100.00 NA NA 100.00 80.00 100.00 NA NA 88.89 NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 100.00 K alternative_acceptor Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911865_5913354;chr2R_5911803_5913354;chr2R_5911755_5913354 chr2R_5911708_5913354 chr2R_5913355_5913433;chr2R_5911703_5911707 53.33 NA 50.00 36.36 69.23 54.55 40.00 58.62 46.15 60.00 45.45 42.11 33.33 58.33 40.00 50.00 55.56 30.00 60.00 48.00 50.00 70.00 58.82 76.92 33.33 14.29 37.50 NA NA 69.23 36.84 NA 81.82 54.84 50.00 44.44 75.00 NA 78.57 63.16 NA 56.67 45.45 63.64 NA 66.67 NA 53.33 43.33 NA 50.00 42.86 NA NA 63.64 62.50 77.78 NA K intron_retention noncoding_22436,RpS6 chrX - chrX_7794323_7794835 chrX_7794322_7794323;chrX_7794835_7794836 chrX_7793889_7794322;chrX_7794836_7795040 0.06 0.02 0.09 0.07 0.04 0.07 0.08 0.13 0.07 0.10 0.08 0.09 0.07 0.07 0.06 0.10 0.13 0.06 0.07 0.06 0.08 0.02 0.02 0.05 0.00 0.09 0.13 0.20 0.02 0.00 0.07 0.04 0.01 0.03 0.02 0.00 0.04 0.03 0.04 0.07 0.03 0.08 0.08 0.04 0.00 0.05 0.03 0.05 0.13 0.09 0.05 0.05 0.06 0.04 0.11 0.06 0.08 0.04 K intron_retention fl(2)d,I_chr2R_9709063_9711788 chr2R - chr2R_9708475_9708540 chr2R_9708474_9708475;chr2R_9708540_9708541 chr2R_9707341_9708474;chr2R_9708541_9708874 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 4.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention dos,I_chr3L_2589746_2592161 chr3L + chr3L_2593802_2593864 chr3L_2593801_2593802;chr3L_2593864_2593865 chr3L_2593561_2593801;chr3L_2593865_2594465 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 5.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor I_chr2L_8029734_8029787,Cka,CG7429 chr2L + chr2L_8030840_8032059;chr2L_8031338_8032059;chr2L_8031036_8032059;chr2L_8031309_8032059 chr2L_8031163_8032059 chr2L_8032060_8032641;chr2L_8030749_8030839 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 1.61 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 K intron_retention CG12065,CE_chrX_8469528_8477573 chrX + chrX_8481559_8481620 chrX_8481558_8481559;chrX_8481620_8481621 chrX_8481291_8481558;chrX_8481621_8482529 0.47 0.21 0.76 0.24 0.00 0.28 0.44 0.85 0.46 0.52 0.52 1.06 0.00 0.70 1.02 0.25 0.32 0.00 0.63 0.47 0.26 0.68 0.72 0.23 0.71 0.00 1.33 2.18 0.00 0.00 0.00 0.34 0.00 0.59 0.00 0.00 0.50 0.50 0.73 0.63 0.71 0.67 0.77 0.23 1.10 1.45 0.66 1.16 0.46 0.90 0.40 0.00 0.42 0.24 0.00 1.06 0.00 1.11 K intron_retention CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25318474_25319167 chr3R_25318473_25318474;chr3R_25319167_25319168 chr3R_25318374_25318473;chr3R_25319168_25319224 10.04 13.92 16.22 12.35 9.09 13.28 19.59 7.01 8.97 10.71 22.11 12.64 8.54 9.62 11.32 10.34 11.97 8.53 10.48 15.00 19.01 5.92 10.53 9.48 13.14 18.57 10.88 11.11 14.29 8.93 10.00 10.66 19.51 10.33 8.28 7.96 7.19 11.92 7.39 8.64 17.14 9.58 9.92 6.63 9.24 8.90 6.91 20.27 10.04 8.88 10.33 8.55 9.88 8.74 9.80 10.90 5.19 9.59 K intron_retention CG33156 chr2R - chr2R_9439524_9439612 chr2R_9439523_9439524;chr2R_9439612_9439613 chr2R_9439457_9439523;chr2R_9439613_9439932 75.00 NA NA NA NA NA NA 70.00 75.00 NA 88.89 66.67 NA NA 88.89 88.89 NA NA NA 81.25 NA 66.67 81.25 73.33 NA NA 81.82 72.73 72.73 76.92 73.33 NA 40.00 90.00 66.67 50.00 77.78 66.67 68.18 76.92 NA 75.00 NA 88.89 77.78 69.23 66.67 80.00 75.00 73.33 72.73 NA NA 77.78 88.89 77.78 NA NA K intron_retention fwd,I_chr3L_310787_310918,RI_chr3L_319514_319746 chr3L - chr3L_310179_310276 chr3L_310178_310179;chr3L_310276_310277 chr3L_307695_310178;chr3L_310277_310465 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.25 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 K alternative_donor Ilp6,RI_chrX_2226173_2226308,I_chrX_2226173_2226571 chrX - chrX_2226173_2227352;chrX_2226173_2226571;chrX_2226173_2226308 chrX_2226173_2226376 chrX_2226073_2226172;chrX_2227353_2227719 0.00 0.00 2.70 0.00 0.00 0.00 1.37 0.98 0.68 0.00 2.56 1.22 0.00 0.00 0.00 0.00 0.00 2.13 0.00 1.04 0.00 3.12 0.00 0.00 0.00 2.22 0.00 5.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.90 1.59 0.00 0.00 0.00 0.00 1.49 0.00 1.25 0.00 K intron_retention gro chr3R + chr3R_21868626_21868716 chr3R_21868625_21868626;chr3R_21868716_21868717 chr3R_21868588_21868625;chr3R_21868717_21869101 71.43 88.89 NA 93.33 81.82 NA 63.16 93.33 74.07 NA NA 73.91 90.91 66.67 61.54 68.42 NA 50.00 63.64 76.47 NA 50.00 72.22 69.23 88.89 NA 71.43 60.00 72.73 50.00 69.23 NA 54.55 78.95 60.00 73.33 53.85 75.00 71.43 54.17 NA 73.68 NA 83.33 NA 60.00 NA 90.00 61.11 63.64 73.33 91.67 NA NA 80.00 66.67 66.67 55.56 K cassette beta-Spec chrX + chrX_17561772_17562308 chrX_17561772_17562139;chrX_17562191_17562308 chrX_17562140_17562190 chrX_17561603_17561771;chrX_17562309_17562415 1.68 2.67 0.87 1.68 0.95 1.53 1.00 1.40 1.54 1.50 1.00 1.36 2.33 1.05 0.62 0.00 1.16 0.79 1.01 0.74 0.00 23.29 2.06 2.22 2.27 0.81 2.25 9.86 7.30 1.61 0.00 1.31 2.79 1.26 2.59 2.47 2.60 4.35 2.60 2.77 1.80 0.81 1.19 3.31 3.91 1.98 3.08 2.46 0.87 2.52 2.94 2.73 2.14 2.29 0.65 2.44 0.90 1.26 K intron_retention CG7033,I_chrX_8985376_8985442,mir-13b-2 chrX + chrX_8985211_8985442 chrX_8985210_8985211;chrX_8985442_8985443 chrX_8984521_8985210;chrX_8985443_8985542 0.87 1.07 0.89 1.17 0.48 0.25 1.06 1.17 0.65 0.42 0.47 0.53 0.67 0.87 0.86 1.20 0.96 0.41 0.91 1.12 0.95 0.72 1.14 0.53 0.70 1.06 1.62 1.89 0.64 0.58 1.24 0.88 0.13 0.97 0.85 1.42 0.76 0.72 0.60 1.20 0.48 0.67 1.74 0.91 0.43 0.73 1.19 0.42 0.76 1.14 1.18 1.06 1.02 1.06 0.65 1.08 0.65 0.29 K jcn_only_AA Ipk1 chr2R + chr2R_16766404_16766475 chr2R_16766404_16766472 chr2R_16766183_16766403;chr2R_16766476_16766616 69.78 NA 57.14 NA NA NA NA 66.67 NA NA NA 72.73 NA NA 69.57 61.90 NA NA NA 79.31 NA NA NA 64.00 NA NA 73.08 NA 80.00 NA 73.33 NA NA 52.17 NA 70.97 70.00 NA 56.00 62.50 63.64 73.91 NA NA 74.07 77.14 77.78 73.91 NA 65.52 75.00 NA 75.00 66.67 NA 64.00 65.71 69.23 K intron_retention sbr,RI_chrX_10731248_10731484 chrX - chrX_10727642_10727707 chrX_10727641_10727642;chrX_10727707_10727708 chrX_10726848_10727641;chrX_10727708_10728204 0.00 0.00 0.00 0.00 0.00 0.00 3.08 4.49 1.32 0.00 0.00 2.27 0.00 0.00 1.85 2.25 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 1.94 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon CG14235,noncoding_24847,CG18809,noncoding_24848 chrX - chrX_19635199_19638294,chrX_19635236_19638294,chrX_19635202_19638294 chrX_19637712_19638294,chrX_19637740_19638294 chrX_19634608_19635198 chrX_19637634_19637711 chrX_19638295_19638317 2.22 1.97 2.05 3.34 2.38 2.00 3.25 2.64 3.70 1.55 2.08 2.33 3.54 3.04 2.22 2.28 3.60 3.07 3.98 2.76 2.79 6.35 2.61 2.09 1.58 3.09 0.66 1.56 3.45 1.94 2.51 1.53 1.79 3.86 1.86 1.26 2.22 2.38 1.49 2.00 0.97 2.39 2.82 2.28 0.93 1.14 1.79 0.53 4.09 2.65 2.07 3.25 1.69 1.38 2.35 1.77 0.90 0.56 K alternative_donor Aats-pro chr3L - chr3L_2651281_2651341 chr3L_2651281_2651333 chr3L_2651213_2651280;chr3L_2651342_2651593 6.46 0.00 0.00 0.00 0.00 0.00 10.53 0.00 4.65 NA NA 2.86 NA 6.67 3.57 NA 6.25 NA NA 3.23 NA 0.00 12.50 10.00 5.88 NA 6.67 3.70 25.00 16.67 38.46 0.00 3.70 6.67 6.67 0.00 16.00 5.56 7.69 10.00 14.29 7.14 NA 0.00 4.35 13.04 10.53 6.67 5.56 7.14 9.09 7.69 4.55 28.57 7.14 5.26 0.00 15.00 K alternative_acceptor CG7145,I_chr3L_21832928_21833150,I_chr3L_21832932_21833106 chr3L - chr3L_21832928_21834330 chr3L_21832932_21834330 chr3L_21834331_21834464;chr3L_21832832_21832927 100.00 NA 100.00 100.00 NA NA 100.00 100.00 92.31 NA NA 92.31 NA NA 100.00 100.00 NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA 100.00 92.31 NA 100.00 NA 100.00 NA NA 88.89 NA NA NA 93.33 NA 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 87.50 NA 100.00 K jcn_only_AD CG15445,REI_chrX_20988432_20988485,RI_chrX_20988432_20988489,REI_chrX_20988439_20988489,I_chrX_20988439_20988552 chrX + chrX_20988432_20988485 chrX_20988439_20988485 chrX_20988486_20988585;chrX_20988339_20988431 40.74 NA NA 48.00 NA NA 23.81 NA 24.24 NA NA 34.48 NA 40.00 NA 54.55 NA NA NA 42.31 NA 35.71 NA NA NA NA NA NA 57.14 NA NA 35.00 55.00 NA NA NA NA NA NA 20.83 39.13 NA NA NA NA 51.43 35.71 47.37 40.00 40.74 61.90 NA NA NA 40.91 26.09 54.55 41.79 K jcn_only_AA I_chr2L_19644636_19644695,REI_chr2L_19702035_19702145,Nf-YB chr2L + chr2L_19736209_19736289 chr2L_19736209_19736272 chr2L_19736042_19736208;chr2L_19736290_19736580 100.00 100.00 98.57 98.82 97.14 100.00 97.92 100.00 100.00 94.87 94.74 98.89 97.22 97.87 100.00 100.00 100.00 100.00 98.44 97.18 93.33 100.00 98.65 100.00 94.29 98.15 100.00 82.22 97.06 95.45 100.00 100.00 96.88 97.78 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 98.41 100.00 100.00 100.00 100.00 97.35 98.36 98.65 100.00 100.00 100.00 98.21 95.52 100.00 100.00 K alternative_donor CG34348 chrX + chrX_11234531_11234639 chrX_11234581_11234639 chrX_11234640_11234778;chrX_11234462_11234530 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 3.85 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 5.56 0.00 5.00 3.45 0.00 0.00 NA NA NA 2.13 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 3.12 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 K alternative_acceptor CycA chr3L - chr3L_11821782_11824826 chr3L_11821785_11824826 chr3L_11824827_11825082;chr3L_11821561_11821781 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 95.65 100.00 100.00 K alternative_donor CG9795,I_chr3R_151216_151418 chr3R + chr3R_151184_151418;chr3R_151216_151418;chr3R_151180_151418 chr3R_151212_151418 chr3R_151419_151518;chr3R_151116_151179 88.89 90.91 75.00 80.95 100.00 80.00 77.78 93.75 92.59 100.00 80.00 88.24 100.00 83.33 84.62 88.89 81.82 88.89 88.89 90.00 100.00 100.00 94.44 88.89 85.71 87.50 100.00 100.00 71.43 100.00 86.67 88.89 75.00 93.33 90.91 91.67 73.33 90.00 86.67 83.33 100.00 88.89 100.00 85.71 80.00 83.33 93.75 88.89 83.33 77.42 84.62 91.67 91.67 100.00 83.33 84.62 93.33 92.31 K jcn_only_AA CG40042 chr2LHet - chr2LHet_168746_168843 chr2LHet_168796_168843 chr2LHet_168844_169120;chr2LHet_168463_168745 3.66 5.16 2.73 4.68 2.26 5.06 4.09 3.82 4.06 6.08 3.86 3.23 4.33 3.53 2.50 3.30 4.71 3.50 2.84 2.61 1.06 4.43 2.99 4.49 7.04 4.07 3.62 6.05 3.95 3.16 8.42 2.70 3.07 4.55 3.66 2.37 4.17 4.24 3.17 3.01 4.19 3.45 4.29 3.35 1.41 4.46 3.14 3.70 3.66 5.16 4.20 3.95 0.32 2.67 3.01 3.16 3.01 1.76 K intron_retention Sucb chr3L - chr3L_5556496_5556592 chr3L_5556495_5556496;chr3L_5556592_5556593 chr3L_5556366_5556495;chr3L_5556593_5556767 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG1161 chr3R + chr3R_1181665_1182146 chr3R_1181665_1181724;chr3R_1181851_1182146 chr3R_1181725_1181850 chr3R_1181556_1181664;chr3R_1182147_1182246 98.29 97.29 98.37 96.71 98.39 99.51 98.09 98.36 99.12 98.29 98.17 97.87 98.88 98.88 98.53 98.48 99.48 97.20 98.22 97.25 98.58 94.64 98.78 97.11 99.24 98.68 99.10 95.65 100.00 96.14 98.83 96.73 80.42 98.77 99.39 97.73 97.73 98.04 99.09 95.91 98.89 98.09 99.40 99.54 97.59 97.93 100.00 96.67 97.89 97.65 99.52 97.84 97.97 97.01 99.28 98.58 98.70 97.16 K alternative_donor CG8468 chr2R + chr2R_10107548_10114915 chr2R_10108271_10114915 chr2R_10114916_10116800;chr2R_10107405_10107547 100.00 100.00 100.00 92.31 100.00 97.44 100.00 100.00 98.77 100.00 100.00 100.00 100.00 97.06 97.67 98.21 100.00 95.00 100.00 100.00 100.00 97.37 100.00 98.18 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 98.00 100.00 98.73 100.00 98.33 96.67 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Ate1 chr2R - chr2R_16143541_16143940 chr2R_16143540_16143541;chr2R_16143940_16143941 chr2R_16143391_16143540;chr2R_16143941_16144113 14.67 13.79 11.63 15.87 15.15 21.43 6.12 5.26 25.93 15.00 3.12 15.52 15.62 15.38 16.28 26.47 18.52 9.68 3.45 14.67 7.41 26.83 14.58 17.07 17.86 19.51 24.39 12.50 9.80 9.68 18.92 18.18 5.26 16.95 13.33 8.51 11.11 16.67 11.54 15.56 13.79 14.67 7.69 19.57 5.88 13.95 16.13 12.50 15.52 13.56 12.50 16.67 13.04 17.65 17.50 15.38 8.51 13.51 K intron_retention msps,I_chr3R_11877071_11877796 chr3R + chr3R_11885098_11885206 chr3R_11885097_11885098;chr3R_11885206_11885207 chr3R_11884965_11885097;chr3R_11885207_11885406 58.95 63.16 72.73 66.67 50.00 54.55 57.89 59.09 59.09 71.43 75.00 65.38 NA 66.67 46.15 62.50 NA 58.82 50.00 50.00 53.33 65.38 42.42 65.62 68.75 54.55 47.83 54.55 62.50 55.00 NA 57.14 61.11 57.14 58.33 68.18 56.52 50.00 48.00 65.71 62.50 62.96 60.00 58.62 61.54 66.67 46.43 74.07 61.29 50.00 52.00 65.00 50.00 42.86 63.64 55.56 40.74 70.83 K intron_retention Tao-1,I_chrX_19471628_19472934 chrX - chrX_19471628_19473430 chrX_19471627_19471628;chrX_19473430_19473431 chrX_19471528_19471627;chrX_19473431_19473780 6.19 5.71 5.21 2.46 9.26 5.68 3.70 7.02 7.53 6.94 3.39 6.72 2.90 8.70 7.53 4.27 8.00 3.88 6.19 3.54 5.56 23.81 7.45 3.12 8.33 8.64 7.58 10.53 6.86 5.43 7.84 9.09 3.41 4.44 7.48 4.21 7.25 6.45 4.88 12.21 5.26 7.41 4.41 6.94 6.25 4.12 8.89 4.55 5.33 10.26 5.83 8.89 4.26 2.50 6.14 6.67 4.17 2.58 K intron_retention CG2249,RI_chr2R_5937150_5937205 chr2R + chr2R_5937150_5937257 chr2R_5937149_5937150;chr2R_5937257_5937258 chr2R_5937050_5937149;chr2R_5937258_5937305 0.51 0.00 0.51 1.09 0.00 0.28 1.23 0.87 0.96 0.95 1.01 0.60 0.81 0.00 0.51 0.00 0.00 1.47 0.00 0.23 0.00 0.00 0.84 0.72 0.00 0.58 1.06 0.00 0.47 1.26 1.12 0.89 0.00 0.65 0.00 0.95 1.26 1.14 0.67 0.27 0.57 0.47 1.25 0.00 0.36 0.93 0.72 0.38 0.46 0.59 0.42 0.00 0.00 0.00 0.51 0.96 0.78 0.34 K intron_retention CtBP chr3R + chr3R_8837742_8845063 chr3R_8837741_8837742;chr3R_8845063_8845064 chr3R_8837730_8837741;chr3R_8845064_8845536 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 87.50 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 K jcn_only_AD Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629527_2629921 chr3L_2629527_2629913 chr3L_2629427_2629526;chr3L_2629922_2630021 97.03 99.11 96.71 96.56 94.90 95.58 96.36 97.27 96.57 95.92 100.00 97.18 98.27 98.42 95.81 96.63 97.77 98.17 96.99 96.19 99.17 97.06 97.19 95.54 97.35 96.96 97.67 100.00 94.15 97.29 96.12 96.53 98.88 97.03 94.92 97.16 97.22 97.19 98.56 98.39 96.24 96.85 98.77 95.40 96.61 97.64 96.23 96.50 96.87 95.97 97.54 96.25 97.58 97.78 96.95 98.39 98.15 96.90 K intron_retention mRpL27,CG15443 chr2L - chr2L_4459208_4459265 chr2L_4459207_4459208;chr2L_4459265_4459266 chr2L_4458662_4459207;chr2L_4459266_4459429 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.70 0.00 14.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11876,CG11877 chr3R + chr3R_24941228_24941288 chr3R_24941227_24941228;chr3R_24941288_24941289 chr3R_24940816_24941227;chr3R_24941289_24941408 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1968 chr2R + chr2R_5175409_5175467 chr2R_5175408_5175409;chr2R_5175467_5175468 chr2R_5175188_5175408;chr2R_5175468_5176531 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 5.56 0.00 2.70 0.00 4.17 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 6.67 9.52 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 8.33 0.00 4.35 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA K intron_retention CG6854,E_chr3L_15091621_15103920 chr3L + chr3L_15099169_15101715 chr3L_15099168_15099169;chr3L_15101715_15101716 chr3L_15099134_15099168;chr3L_15101716_15101745 81.82 NA 66.67 90.91 NA NA 100.00 87.50 78.57 NA NA 88.24 88.89 NA NA 91.67 NA NA NA 61.11 NA NA 81.82 81.82 NA NA 90.91 88.89 85.71 77.78 NA 88.89 77.78 90.00 70.00 72.73 NA 77.78 60.00 90.91 72.22 87.50 NA 81.82 63.64 61.11 87.50 66.67 57.14 73.33 58.82 88.89 NA NA 66.67 81.82 88.89 81.82 K alternative_donor rut,I_chrX_14718760_14718821 chrX - chrX_14718961_14719994 chrX_14718961_14719778 chrX_14718822_14718960;chrX_14719995_14720063 71.43 80.00 NA 75.00 NA NA NA 85.71 50.00 NA NA 66.67 NA 83.33 71.43 88.89 80.00 80.00 NA 55.56 NA NA 62.50 NA NA NA NA NA NA NA NA NA 42.86 72.73 66.67 NA NA NA NA 66.67 NA 77.78 NA 100.00 NA 50.00 NA 60.00 62.50 NA 57.14 NA NA NA 80.00 NA NA NA K jcn_only_AD Syx4,I_chrX_2635555_2635621,I_chrX_2636831_2636971 chrX - chrX_2633579_2633652;chrX_2633579_2633742 chrX_2633579_2635455 chrX_2633330_2633578;chrX_2635456_2635529 82.03 80.00 84.04 88.10 83.87 75.64 84.09 85.11 81.65 40.91 83.33 87.40 72.09 84.29 79.80 84.35 78.87 81.01 82.00 81.82 77.46 90.91 86.15 80.30 82.05 75.00 85.37 88.46 NA 92.00 87.27 79.03 73.79 85.56 80.28 83.33 83.93 78.85 84.42 81.48 86.89 81.87 86.49 94.87 84.30 79.21 77.27 82.02 78.21 89.66 82.09 82.93 65.62 75.00 83.19 75.64 77.78 69.00 K alternative_donor CG32016,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_978516_978914;chr4_978516_978631 chr4_978516_978612 chr4_978478_978515;chr4_978915_978920 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG2371 chrX - chrX_11572383_11572435 chrX_11572382_11572383;chrX_11572435_11572436 chrX_11571619_11572382;chrX_11572436_11572509 8.34 NA NA 14.29 NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 6.67 NA K intron_retention Karybeta3,I_chr3R_476219_476306 chr3R + chr3R_476457_476520 chr3R_476456_476457;chr3R_476520_476521 chr3R_476307_476456;chr3R_476521_477615 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention akirin,I_chr3L_7363173_7364806,I_chr3L_7363177_7364806,I_chr3L_7363177_7364831,I_chr3L_7363211_7364831,I_chr3L_7363731_7364806,I_chr3L_7364126_7364806,RI_chr3L_7364737_7364806 chr3L + chr3L_7363285_7364806 chr3L_7363284_7363285;chr3L_7364806_7364807 chr3L_7362837_7363284;chr3L_7364807_7364906 0.00 0.00 0.00 1.38 0.00 0.94 0.00 0.00 0.66 0.00 0.90 1.79 2.16 0.00 0.77 0.00 1.72 0.00 0.00 0.94 0.00 1.32 1.76 0.00 0.00 0.00 3.05 2.80 0.00 0.00 0.00 1.15 1.64 1.48 0.00 1.87 0.00 1.80 0.00 1.12 0.00 0.94 0.00 0.00 1.33 0.00 4.88 0.51 0.00 0.83 2.22 0.00 3.03 4.00 1.40 0.00 0.00 0.00 K intron_retention par-1,I_chr2R_15365210_15370456 chr2R + chr2R_15366371_15370456 chr2R_15366370_15366371;chr2R_15370456_15370457 chr2R_15366257_15366370;chr2R_15370457_15370556 0.64 0.00 0.00 4.84 0.00 0.00 2.70 4.17 1.77 5.56 22.22 4.29 0.00 0.00 0.00 0.00 3.23 0.00 0.00 2.25 5.71 3.95 2.60 4.48 0.00 0.00 0.00 2.63 NA 2.17 0.00 0.00 0.00 1.54 2.94 0.00 3.33 2.63 3.45 0.00 NA 1.54 6.06 0.00 0.00 0.00 0.00 NA 1.27 1.92 0.00 5.00 0.00 3.45 0.00 2.94 0.00 0.00 K intron_retention eIF2B-delta chr2R + chr2R_19274141_19274529 chr2R_19274140_19274141;chr2R_19274529_19274530 chr2R_19274016_19274140;chr2R_19274530_19274619 92.86 NA 100.00 93.75 NA 100.00 91.67 92.86 93.75 81.82 90.00 94.74 100.00 88.89 NA 100.00 NA NA 80.00 86.67 NA 83.33 81.25 92.31 100.00 NA 92.31 88.24 94.12 63.64 100.00 69.23 75.00 93.33 NA NA 92.86 100.00 90.00 75.00 100.00 93.75 NA NA NA 81.82 92.86 93.33 100.00 93.33 100.00 100.00 100.00 NA 88.89 100.00 NA 87.50 K multi_cassette CG11299,noncoding_8970,I_chr2R_19602423_19609308,I_chr2R_19619053_19619186 chr2R + chr2R_19601642_19616571 chr2R_19601642_19602203;chr2R_19602423_19609732;chr2R_19610399_19616571 chr2R_19602204_19602422;chr2R_19609733_19610398 chr2R_19601628_19601641;chr2R_19616572_19616757 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 88.89 100.00 100.00 100.00 100.00 K intron_retention Rbp2,I_chrX_16343528_16343906 chrX + chrX_16344634_16345307 chrX_16344633_16344634;chrX_16345307_16345308 chrX_16344568_16344633;chrX_16345308_16345592 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA 7.41 0.00 0.00 NA NA 7.69 NA 2.56 0.00 NA 0.00 4.04 7.69 0.00 0.00 0.00 NA 0.00 NA NA 9.09 NA 0.00 0.00 0.00 0.00 2.90 9.09 NA NA NA 0.00 NA NA NA NA 2.27 K jcn_only_AA None chrU + chrU_1178980_1183262;chrU_1178980_1179142 chrU_1178980_1179256 55.56 NA NA NA NA NA NA NA 65.62 NA NA 63.64 NA NA NA 57.14 NA NA 47.62 61.54 NA NA NA NA NA NA NA NA NA NA 60.00 NA NA 30.77 NA NA NA NA NA 45.00 NA 55.56 NA NA NA NA NA NA 55.56 50.00 NA NA NA NA NA NA NA NA K alternative_acceptor Mnt chrX + chrX_3587966_3592372;chrX_3587966_3592774;chrX_3587966_3592150 chrX_3587966_3592777 chrX_3587244_3587965;chrX_3592778_3593060 5.00 0.00 6.45 5.71 13.04 13.79 9.30 2.63 6.67 12.50 5.00 0.00 5.26 7.69 6.25 0.00 0.00 5.00 0.00 2.00 5.26 3.70 3.45 0.00 5.88 0.00 0.00 0.00 6.25 7.14 7.41 12.50 3.57 4.88 6.25 4.76 7.69 5.88 8.82 5.56 0.00 1.85 4.76 3.70 10.00 0.00 11.11 3.70 7.84 0.00 4.35 6.25 10.00 0.00 6.67 0.00 0.00 14.29 K cassette Prosap,I_chr2R_9956417_9957219,I_chr2R_9963748_9979497 chr2R - chr2R_9954080_9956349 chr2R_9954080_9954751;chr2R_9955190_9956349 chr2R_9954752_9955189 chr2R_9953869_9954079;chr2R_9956350_9956416 99.03 100.00 97.83 98.80 100.00 100.00 100.00 94.74 99.35 96.30 100.00 99.29 95.12 100.00 100.00 97.56 100.00 100.00 100.00 99.29 97.56 99.26 98.87 99.03 97.83 97.50 96.51 100.00 92.19 99.26 96.00 100.00 100.00 96.30 98.80 100.00 99.04 99.14 99.31 97.50 97.83 99.30 97.14 98.94 100.00 98.04 97.78 98.95 100.00 100.00 96.94 100.00 98.84 100.00 98.11 97.73 97.56 96.23 K alternative_donor Lnk,RI_chr3R_21714780_21715376 chr3R + chr3R_21714419_21715376;chr3R_21714788_21715376 chr3R_21714614_21715376 chr3R_21715377_21715476;chr3R_21714271_21714418 72.41 70.59 73.81 78.85 72.41 75.86 68.75 80.60 71.11 47.06 84.00 76.39 81.25 75.00 65.79 77.61 79.41 64.86 73.91 61.86 84.00 67.86 61.82 72.73 70.83 75.68 53.70 57.14 53.57 66.67 63.77 65.22 78.79 77.46 82.14 77.42 50.00 54.05 50.00 71.43 82.61 77.46 77.78 58.97 61.11 85.37 52.38 75.51 76.54 74.07 64.62 72.73 50.00 62.50 81.63 57.14 64.00 79.49 K intron_retention Sirt2 chr3R + chr3R_16154696_16154750 chr3R_16154695_16154696;chr3R_16154750_16154751 chr3R_16154599_16154695;chr3R_16154751_16156637 0.00 0.00 0.00 3.77 0.00 0.00 3.03 1.82 2.56 0.00 0.00 1.37 0.00 0.00 0.00 4.00 0.00 0.00 0.00 2.60 0.00 0.00 9.09 1.54 10.81 0.00 6.35 17.24 14.89 0.00 0.00 0.00 0.00 0.00 0.00 9.76 4.84 0.00 0.00 1.27 11.36 1.35 0.00 0.00 0.00 4.41 3.92 0.00 0.00 0.00 1.92 0.00 2.44 4.00 2.56 2.44 0.00 4.76 K intron_retention ari-1,I_chrX_18026911_18026975 chrX - chrX_18026911_18026992 chrX_18026910_18026911;chrX_18026992_18026993 chrX_18026811_18026910;chrX_18026993_18027075 0.00 0.00 2.27 0.00 2.22 0.00 0.00 2.94 0.00 0.00 3.23 5.88 0.00 2.44 9.30 0.00 0.00 0.00 0.00 1.96 0.00 0.00 4.35 2.56 0.00 5.00 5.26 8.70 16.67 0.00 0.00 7.14 0.00 3.70 0.00 0.00 4.55 3.57 2.56 3.57 0.00 0.00 5.71 0.00 3.33 0.00 0.00 4.88 2.90 0.00 4.44 0.00 4.17 0.00 1.92 0.00 2.63 0.00 K intron_retention CPTI,I_chr2R_6358255_6358734,I_chr2R_6358255_6359122,RI_chr2R_6358779_6358944,I_chr2R_6360956_6365128 chr2R - chr2R_6358779_6359122 chr2R_6358778_6358779;chr2R_6359122_6359123 chr2R_6358735_6358778;chr2R_6359123_6359222 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 2.70 2.70 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 3.92 1.56 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 1.82 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5960163;chr3R_5959310_5960101;chr3R_5959310_5959789;chr3R_5959310_5960049;chr3R_5959310_5960182;chr3R_5959310_5960026;chr3R_5959310_5960158;chr3R_5959310_5959679 chr3R_5959310_5960041 chr3R_5958937_5959309;chr3R_5960183_5960224 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 7.14 6.67 0.00 10.00 5.88 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 6.25 0.00 10.00 0.00 0.00 0.00 6.25 0.00 0.00 7.69 K alternative_acceptor CG17514 chr2RHet + chr2RHet_2775916_2775978 chr2RHet_2775916_2775968 chr2RHet_2775909_2775915;chr2RHet_2775979_2776071 88.46 NA 93.75 85.71 NA 90.00 85.29 87.50 80.65 NA 87.50 88.46 88.24 94.74 100.00 92.59 90.91 70.00 84.21 85.71 NA NA NA NA NA 88.89 NA NA NA NA 93.75 NA 100.00 88.46 NA NA NA NA NA 88.89 NA 84.62 90.91 NA NA NA NA 90.91 85.19 NA NA NA NA NA 85.71 NA NA 100.00 K intron_retention fl(2)d,I_chr2R_9709063_9711788 chr2R - chr2R_9709063_9711296 chr2R_9709062_9709063;chr2R_9711296_9711297 chr2R_9708963_9709062;chr2R_9711297_9711975 11.54 13.21 8.70 11.63 17.65 3.85 11.76 25.00 14.29 3.57 7.69 11.29 24.00 17.65 10.71 24.00 10.53 6.67 14.81 12.82 15.00 13.56 17.54 7.46 17.65 25.00 20.00 10.87 10.81 8.47 13.64 13.64 16.67 15.00 7.41 17.07 10.07 5.88 8.64 18.75 NA 10.94 0.00 8.33 9.38 0.00 13.33 22.22 20.41 6.67 11.67 10.00 8.70 10.34 11.54 5.63 6.45 NA K intron_retention Klc,I_chr3L_12741058_12741155,I_chr3L_12741783_12742943,I_chr3L_12741838_12743062 chr3L - chr3L_12741042_12741155 chr3L_12741041_12741042;chr3L_12741155_12741156 chr3L_12740958_12741041;chr3L_12741156_12741255 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA sgg,I_chrX_2528059_2528637,I_chrX_2528131_2535622,RI_chrX_2528212_2535830,I_chrX_2528367_2535622,I_chrX_2528472_2535622,I_chrX_2529065_2563945,I_chrX_2536127_2563666,I_chrX_2563342_2563666,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2528059_2528859;chrX_2528059_2528868;chrX_2528059_2535830 chrX_2528059_2535622 chrX_2528052_2528058 77.42 63.64 75.00 76.09 NA NA 59.18 93.75 81.82 NA NA 82.14 86.21 77.42 77.78 82.35 NA 50.00 80.56 79.17 NA NA 67.74 59.09 NA 80.00 NA NA NA 70.00 76.47 NA 50.00 88.10 NA NA 60.00 NA NA 60.87 NA 79.55 89.29 NA NA NA NA NA 81.25 NA 75.00 72.73 NA NA 90.91 NA NA NA K mutually_exclusive Nopp140,I_chr3L_21828330_21828566,I_chr3L_21828986_21829082 chr3L + chr3L_21827930_21828566,chr3L_21828986_21829082 chr3L_21827930_21828170,chr3L_21828330_21829082 chr3L_21828567_21828985 chr3L_21828171_21828329 chr3L_21827465_21827929;chr3L_21829083_21829182 24.49 27.70 26.42 29.38 19.35 25.47 34.07 31.33 23.95 18.52 29.87 21.57 30.00 31.71 20.77 31.87 23.17 25.00 23.91 33.82 21.11 6.15 28.33 24.17 30.60 26.67 38.64 28.84 19.51 19.14 25.77 17.73 14.68 26.19 20.00 27.81 26.73 21.62 24.49 19.88 20.15 21.88 24.49 22.10 21.31 23.08 30.30 14.81 27.94 24.22 27.75 27.84 24.41 30.16 24.43 27.10 36.79 20.77 K alternative_donor ena chr2R + chr2R_15029330_15029711;chr2R_15029276_15029711 chr2R_15029352_15029711 chr2R_15029712_15029859;chr2R_15029150_15029275 34.15 40.74 45.71 37.29 30.56 34.38 46.27 59.02 37.78 20.00 34.78 37.36 37.84 34.78 34.15 28.17 41.46 48.00 48.98 30.77 36.67 26.67 34.15 28.12 50.00 50.00 28.89 16.67 40.00 13.79 31.91 33.33 23.81 40.54 25.00 32.43 33.33 33.33 40.91 32.50 46.15 41.18 46.51 32.26 25.00 23.81 22.22 36.36 34.07 38.89 21.28 24.14 21.05 23.08 45.28 34.78 20.00 17.65 K jcn_only_AA Eph,I_chr4_631523_634240,I_chr4_632065_634240,I_chr4_632433_632707,I_chr4_632433_632988,I_chr4_639690_640473,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_632433_634240 chr4_632433_632707 chr4_632353_632432;chr4_634241_634340 1.64 0.00 0.00 3.75 0.00 2.08 1.32 0.00 0.77 0.00 0.00 1.80 6.15 3.57 3.17 0.99 1.64 0.00 0.00 4.35 0.00 NA 2.67 0.00 0.00 1.64 2.50 NA NA 11.11 0.00 NA NA 3.57 8.00 8.00 0.00 0.00 0.00 2.63 NA 4.08 1.92 0.00 NA 0.00 NA NA 2.70 NA 1.72 2.78 NA NA 1.82 13.33 NA NA K intron_retention drongo,I_chr2L_837379_847733 chr2L - chr2L_834584_834973 chr2L_834583_834584;chr2L_834973_834974 chr2L_833661_834583;chr2L_834974_835105 2.27 1.28 3.12 1.80 2.08 2.00 4.20 3.94 1.80 4.85 5.48 2.15 6.49 2.67 4.95 2.27 3.45 0.00 1.20 2.10 0.00 1.10 1.99 1.59 3.48 4.88 3.55 3.61 13.39 1.53 0.00 3.81 1.03 1.28 1.35 2.16 2.24 1.45 1.81 2.54 2.04 2.56 2.70 2.99 2.55 0.00 2.76 0.00 3.01 3.02 2.29 1.94 1.25 2.91 2.54 2.88 3.38 2.08 K cassette CG9171,I_chr2L_5771210_5773014,RI_chr2L_5792418_5799117,I_chr2L_5799412_5800043 chr2L - chr2L_5771210_5799117 chr2L_5771210_5787964;chr2L_5787985_5799117 chr2L_5787965_5787984 chr2L_5771110_5771209;chr2L_5799118_5799211 45.45 NA NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention vari,I_chr2L_20792267_20794059 chr2L - chr2L_20790053_20790124 chr2L_20790052_20790053;chr2L_20790124_20790125 chr2L_20789721_20790052;chr2L_20790125_20790335 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG7609,I_chr3R_25574492_25574541 chr3R - chr3R_25569455_25569510 chr3R_25569458_25569510 chr3R_25569511_25569843;chr3R_25569446_25569454 89.56 89.66 80.00 94.29 NA NA 73.08 86.67 97.87 NA NA 89.47 95.65 90.91 90.32 85.11 70.83 95.00 82.86 94.64 91.67 90.91 84.21 88.57 90.48 93.55 89.66 NA 75.00 89.29 84.00 95.00 83.33 94.59 95.83 NA NA 85.19 95.83 88.64 90.48 85.71 80.00 92.68 NA 95.45 90.00 87.88 90.70 93.10 93.75 85.71 85.00 NA 76.92 82.61 82.76 85.19 K multi_cassette Nipped-B,I_chr2R_583116_587893,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_583116_587893 chr2R_583116_586007;chr2R_586502_586563;chr2R_586657_587893 chr2R_586008_586501;chr2R_586564_586656 chr2R_583016_583115;chr2R_587894_587993 98.51 98.33 98.72 83.58 100.00 100.00 98.25 99.41 97.42 97.50 100.00 95.10 100.00 96.39 98.59 99.32 98.67 96.43 97.03 99.34 100.00 97.30 98.02 98.51 100.00 94.23 98.88 96.72 96.00 100.00 96.67 100.00 100.00 99.40 98.51 96.97 100.00 97.67 100.00 99.06 97.50 96.15 97.53 97.75 84.62 98.31 97.56 100.00 99.40 97.62 100.00 100.00 96.55 100.00 98.72 100.00 97.83 98.33 K alternative_donor CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516330_21517821;chr3L_21516399_21517821;chr3L_21517168_21517821;chr3L_21516722_21517821;chr3L_21516501_21517821;chr3L_21516918_21517821;chr3L_21516343_21517821;chr3L_21516728_21517821 chr3L_21516706_21517821 chr3L_21517822_21517920;chr3L_21516311_21516329 20.00 25.00 18.18 0.00 0.00 14.29 30.43 9.09 20.00 0.00 0.00 11.76 0.00 18.18 22.22 15.38 16.67 7.14 22.22 29.17 18.18 16.67 25.00 37.50 50.00 40.00 50.00 22.22 23.08 33.33 25.00 0.00 15.38 16.67 20.00 25.00 40.00 33.33 28.57 19.05 50.00 18.52 12.50 15.38 25.00 16.67 20.00 22.22 18.18 25.00 20.00 20.00 0.00 0.00 18.18 60.00 33.33 0.00 K intron_retention RpS3A,I_chr4_87364_87465,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87533_87673 chr4_87532_87533;chr4_87673_87674 chr4_87466_87532;chr4_87674_87863 100.00 100.00 99.98 99.99 100.00 100.00 100.00 99.98 100.00 100.00 100.00 99.99 100.00 100.00 99.98 99.99 100.00 100.00 100.00 99.99 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.96 99.96 99.95 99.98 100.00 100.00 99.99 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.99 99.98 100.00 100.00 100.00 100.00 99.98 100.00 100.00 99.97 100.00 99.97 100.00 100.00 100.00 100.00 100.00 K intron_retention MEP-1,CG42245,noncoding_10195,CG1143 chr3L + chr3L_2640272_2640336 chr3L_2640271_2640272;chr3L_2640336_2640337 chr3L_2640026_2640271;chr3L_2640337_2640516 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 K jcn_only_AA CG7081,I_chr3L_8332291_8332360,DNApol-alpha50 chr3L + chr3L_8332291_8332360 chr3L_8332291_8332356 chr3L_8332275_8332290;chr3L_8332361_8332424 98.00 NA 100.00 94.87 NA NA 97.87 94.74 100.00 NA NA 96.97 NA 95.24 96.55 96.23 NA NA 97.44 98.00 NA 95.24 NA NA NA 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA NA NA 100.00 100.00 100.00 100.00 NA 100.00 NA 95.83 NA 96.67 100.00 NA 100.00 NA NA NA 100.00 NA 95.12 97.67 K jcn_only_AA l(2)tid chr2R + chr2R_19596011_19596157 chr2R_19596011_19596152 chr2R_19594625_19596010;chr2R_19596158_19596758 90.83 89.02 91.38 92.31 87.76 90.70 87.18 88.24 90.43 88.00 96.36 94.00 100.00 88.57 76.81 92.11 86.84 90.74 91.49 89.22 95.83 92.31 90.70 84.85 91.23 93.02 98.11 90.28 96.94 86.21 85.29 86.67 89.54 93.10 94.12 88.89 93.18 91.55 87.88 88.19 91.51 89.83 93.02 91.11 88.80 88.07 90.83 91.07 92.41 93.15 94.52 92.68 89.47 95.08 91.30 96.04 89.61 81.98 K alternative_acceptor CG32016,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_974433_974645 chr4_974526_974645 chr4_974646_974852;chr4_974139_974432 97.56 91.49 95.12 95.45 100.00 96.67 98.61 98.00 96.30 94.74 100.00 97.53 100.00 97.50 100.00 98.75 98.00 96.97 100.00 98.91 100.00 97.50 96.77 100.00 96.67 100.00 93.75 95.65 96.15 100.00 98.11 95.24 95.65 98.85 100.00 93.18 96.88 96.88 97.56 98.67 100.00 97.83 100.00 100.00 92.00 97.56 97.50 97.56 99.04 95.16 98.21 95.24 100.00 100.00 98.25 97.37 98.04 97.50 K alternative_donor CG31301,I_chr3R_11172776_11172930,RI_chr3R_11173123_11173185 chr3R + chr3R_11173123_11173185 chr3R_11173128_11173185 chr3R_11173186_11173254;chr3R_11173059_11173122 100.00 100.00 93.75 97.06 100.00 92.86 100.00 97.37 97.44 100.00 100.00 97.14 93.33 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 93.65 100.00 100.00 100.00 100.00 100.00 95.83 100.00 96.77 97.14 100.00 100.00 100.00 96.30 100.00 100.00 97.62 100.00 96.00 94.12 94.44 95.24 96.43 100.00 100.00 98.94 K cassette Arf51F,I_chr2R_11210733_11210953 chr2R + chr2R_11210247_11210953;chr2R_11210218_11210953;chr2R_11210536_11210953 chr2R_11210218_11210628,chr2R_11210536_11210628,chr2R_11210247_11210628;chr2R_11210647_11210953 chr2R_11210629_11210646 chr2R_11209979_11210217;chr2R_11210954_11211053 10.91 13.01 9.21 12.43 10.00 10.91 13.51 11.28 11.76 10.71 10.19 28.76 15.53 10.00 10.53 10.84 14.85 6.85 10.42 11.82 7.38 8.86 13.74 12.30 17.07 16.10 16.35 8.00 9.17 10.40 9.23 9.42 8.54 13.59 8.27 28.21 12.05 11.11 8.62 12.45 13.33 11.74 12.62 12.17 14.38 8.80 10.89 7.66 10.26 8.33 8.97 12.63 8.55 9.90 13.71 13.18 11.36 5.48 K intron_retention CG5098 chr2R + chr2R_13987111_13987179 chr2R_13987110_13987111;chr2R_13987179_13987180 chr2R_13984553_13987110;chr2R_13987180_13988546 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 8.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA CG40467,RI_chr3LHet_770101_770152,I_chr3LHet_771023_771113,RI_chr3LHet_771455_771626 chr3LHet - chr3LHet_787757_789080;chr3LHet_787974_789080 chr3LHet_722704_789080 chr3LHet_789081_789255;chr3LHet_722418_722703 0.00 0.00 0.00 0.00 NA 4.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 K jcn_only_AD CG12163,CG33293,I_chr3R_1068862_1077145,RI_chr3R_1069977_1077139 chr3R - chr3R_1065342_1077145 chr3R_1065342_1077139 chr3R_1065214_1065341;chr3R_1077146_1077239 1.24 1.26 1.94 1.08 1.69 1.08 2.17 1.91 1.88 0.42 0.00 1.25 1.42 1.07 0.63 1.24 0.70 2.02 1.69 1.37 0.29 1.88 1.25 1.51 1.10 1.04 2.87 1.97 2.41 1.29 0.75 0.45 0.56 1.59 1.24 1.91 1.01 1.71 0.43 0.45 1.74 1.77 1.55 1.36 1.03 1.36 0.53 0.55 0.77 0.00 0.93 0.82 1.19 1.26 0.21 0.35 1.12 0.99 K alternative_last_exon Idh,I_chr3L_8351006_8351949,I_chr3L_8351036_8351655 chr3L - chr3L_8351006_8351949 chr3L_8351816_8351949 chr3L_8348244_8351005 chr3L_8351656_8351815 chr3L_8351950_8351962 57.14 60.00 28.57 28.57 66.67 25.00 57.14 58.33 63.64 55.56 50.00 87.50 33.33 50.00 50.00 66.67 50.00 40.00 28.57 77.27 42.86 44.44 80.00 69.23 75.00 25.00 85.71 57.14 44.44 66.67 40.00 60.00 44.44 50.00 66.67 58.33 75.00 50.00 57.14 75.00 50.00 87.50 50.00 66.67 33.33 42.86 66.67 54.55 77.78 50.00 70.00 75.00 50.00 33.33 60.00 55.56 71.43 70.00 K intron_retention CG31619,I_chr2L_21725446_21728027 chr2L + chr2L_21727574_21728027 chr2L_21727573_21727574;chr2L_21728027_21728028 chr2L_21727423_21727573;chr2L_21728028_21728127 3.85 4.05 4.17 13.85 0.00 5.88 7.32 8.11 5.37 6.25 NA 4.59 NA 8.47 8.33 6.67 7.55 5.26 0.00 7.69 0.00 3.70 2.35 0.00 0.00 4.11 1.82 0.00 0.00 3.85 8.22 0.00 3.36 5.45 4.17 4.44 1.02 0.00 2.78 4.21 0.00 4.24 6.82 1.02 0.93 3.12 1.23 4.76 5.15 1.79 3.85 6.98 0.98 1.22 3.90 1.49 2.15 0.72 K jcn_only_AD Vap-33-1 chrX + chrX_3843406_3845447 chrX_3843747_3845447 chrX_3845448_3845600;chrX_3843337_3843405 100.00 100.00 100.00 100.00 100.00 100.00 99.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG1647 chr3R + chr3R_24646228_24646293 chr3R_24646240_24646293 chr3R_24646294_24646440;chr3R_24645947_24646227 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_donor spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20334731_20336286 chr2L_20334851_20336286 chr2L_20336287_20336404;chr2L_20334627_20334730 1.63 1.37 1.27 0.85 0.00 0.00 1.63 0.76 1.15 1.27 1.59 0.00 1.79 4.29 3.08 1.12 0.00 0.00 2.60 0.66 2.13 1.26 2.27 3.80 2.50 1.30 5.41 3.65 9.15 1.80 2.42 1.79 0.81 0.88 4.48 3.61 1.94 1.92 4.84 0.42 1.85 0.68 0.00 0.78 1.64 2.44 3.57 1.51 1.35 3.19 1.32 3.77 2.22 4.65 1.12 1.61 3.53 1.38 K intron_retention Stat92E,I_chr3R_16367780_16376442,I_chr3R_16367780_16377802,I_chr3R_16367815_16368548,att-ORFB chr3R - chr3R_16367276_16376442 chr3R_16367275_16367276;chr3R_16376442_16376443 chr3R_16366245_16367275;chr3R_16376443_16376542 0.00 0.00 0.00 0.00 0.00 0.00 1.77 0.79 1.37 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 6.82 0.00 0.45 0.00 9.09 0.74 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Lasp,I_chr3L_16671761_16673911,R_chr3L_16672970_16673911,RI_chr3L_16674471_16704042 chr3L - chr3L_16673033_16673911;chr3L_16672970_16673911 chr3L_16672574_16673911 chr3L_16673912_16674011;chr3L_16671908_16672573 0.00 0.00 0.00 0.00 0.50 0.58 0.00 0.00 0.16 0.29 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.16 0.61 0.00 0.10 0.00 0.32 0.00 0.11 0.24 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.24 0.38 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 K jcn_only_AD CG2789 chr2L + chr2L_560306_560369 chr2L_560311_560369 chr2L_560370_560522;chr2L_560097_560305 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor alpha-Man-II chr3R + chr3R_5238530_5238585 chr3R_5238530_5238582 chr3R_5238326_5238529;chr3R_5238586_5239112 37.50 38.46 NA 33.33 33.33 NA 33.33 33.33 37.50 NA NA 41.18 NA NA 30.77 NA 41.67 NA NA 27.78 NA 55.56 31.58 50.00 NA 38.46 35.00 42.11 45.45 35.71 NA NA 36.36 52.94 36.36 25.00 46.67 36.36 45.45 36.84 NA 45.83 NA 41.67 NA NA NA 43.75 42.86 NA 35.71 41.67 NA NA 33.33 NA NA NA K intron_retention CG17002 chr2R + chr2R_2874282_2874338 chr2R_2874281_2874282;chr2R_2874338_2874339 chr2R_2873564_2874281;chr2R_2874339_2874438 3.75 1.67 0.00 7.14 0.00 8.70 3.45 5.56 5.66 7.41 0.00 0.00 NA 0.00 16.67 NA 11.76 7.41 14.29 3.92 0.00 1.16 4.71 4.71 3.85 20.00 5.00 21.43 3.64 6.52 4.35 4.88 0.00 0.00 0.00 12.50 5.43 1.59 3.45 9.59 9.52 7.46 NA 0.00 3.23 7.94 1.59 0.00 0.00 3.12 0.00 0.00 3.95 3.61 9.09 0.00 2.22 2.04 K cassette Gga chrX + chrX_9495210_9496113 chrX_9495210_9495286;chrX_9495445_9496113 chrX_9495287_9495444 chrX_9495093_9495209;chrX_9496114_9496708 100.00 100.00 100.00 100.00 97.22 97.62 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 98.82 100.00 100.00 98.59 100.00 100.00 100.00 97.96 100.00 97.14 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 98.00 97.78 100.00 100.00 100.00 100.00 100.00 98.63 100.00 100.00 96.67 100.00 100.00 100.00 100.00 K jcn_only_AA Mnn1 chr2L + chr2L_7057157_7057347 chr2L_7057157_7057223 chr2L_7056561_7057156;chr2L_7057348_7057674 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K alternative_donor Atet,chr2L_4334987_4335394.0,chr2L_4335788_4336447.0 chr2L + chr2L_4334440_4336449;chr2L_4334105_4336449;chr2L_4334111_4336449 chr2L_4334031_4336449 chr2L_4336450_4336957;chr2L_4333936_4334030 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 5.56 0.00 3.03 0.00 0.00 8.33 0.00 0.00 0.00 0.00 2.13 3.33 0.00 2.78 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 2.50 3.51 0.00 0.00 0.00 10.26 0.00 0.00 8.00 2.27 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 K intron_retention CG18324,I_chr2R_10068194_10068715 chr2R + chr2R_10056609_10056891 chr2R_10056608_10056609;chr2R_10056891_10056892 chr2R_10056291_10056608;chr2R_10056892_10057027 33.33 41.18 33.33 56.67 40.00 35.00 30.56 32.50 36.36 NA NA 38.89 63.64 33.33 38.89 35.90 29.41 38.10 40.00 31.11 16.67 35.29 28.57 31.03 42.86 34.78 36.00 40.00 22.22 13.79 38.64 11.76 41.67 35.29 43.75 43.75 23.08 19.05 30.77 16.67 41.18 34.88 31.82 20.69 10.53 24.14 31.43 31.25 32.43 30.30 42.86 33.33 35.71 24.14 33.33 34.62 25.00 33.33 K intron_retention sec23,I_chr3R_1474873_1475080,I_chr3R_1477727_1478102 chr3R + chr3R_1476692_1476753 chr3R_1476691_1476692;chr3R_1476753_1476754 chr3R_1475442_1476691;chr3R_1476754_1476907 0.66 0.76 0.00 1.62 1.38 0.00 0.00 0.00 1.04 1.46 0.41 0.82 0.61 0.00 1.29 1.10 0.00 1.59 1.29 0.46 1.06 0.00 0.70 2.53 0.00 0.00 2.36 2.61 0.00 0.99 0.58 0.00 0.00 1.56 1.57 0.66 0.81 0.83 0.26 1.77 0.88 0.95 0.00 0.00 0.00 0.55 1.34 0.00 1.54 0.58 0.82 0.00 0.82 1.47 0.00 0.00 0.00 0.00 K intron_retention Df31,RE_chr2L_21628206_21629662,I_chr2L_21628206_21629666,I_chr2L_21628210_21628515,I_chr2L_21628210_21628944,I_chr2L_21628210_21629216,EI_chr2L_21628210_21629715,REI_chr2L_21628210_21629884,I_chr2L_21628224_21629666,I_chr2L_21628734_21629666 chr2L - chr2L_21628210_21629216 chr2L_21628209_21628210;chr2L_21629216_21629217 chr2L_21628124_21628209;chr2L_21629217_21629264 90.91 NA 87.50 85.71 NA NA 93.33 95.00 94.44 NA NA 83.33 88.89 100.00 92.86 94.12 88.89 91.67 92.86 80.95 90.91 87.50 92.31 83.33 100.00 90.00 94.74 NA 100.00 100.00 90.91 87.50 88.89 94.74 100.00 100.00 92.86 80.00 90.91 72.00 90.91 86.36 84.62 NA 71.43 93.75 91.67 93.33 95.00 90.91 92.86 90.00 NA 84.62 88.89 66.67 NA 92.31 K intron_retention CtBP chr3R + chr3R_8845924_8846575 chr3R_8845923_8845924;chr3R_8846575_8846576 chr3R_8845618_8845923;chr3R_8846576_8846836 2.19 3.12 2.68 3.24 3.05 3.12 6.21 3.53 3.07 0.97 4.08 2.97 5.50 5.88 4.38 5.88 4.72 2.40 6.59 1.87 1.98 1.25 0.98 1.85 3.45 1.98 3.05 3.31 2.63 1.49 3.97 0.00 2.17 3.24 3.85 0.74 1.75 0.97 2.10 1.57 1.89 2.61 2.00 0.71 1.56 1.33 1.37 0.00 3.80 1.51 2.13 3.26 0.00 0.95 2.19 2.44 0.00 1.44 K intron_retention ScpX chr2L + chr2L_18831387_18831722 chr2L_18831386_18831387;chr2L_18831722_18831723 chr2L_18831240_18831386;chr2L_18831723_18832046 0.00 0.00 0.00 0.00 0.00 0.00 12.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 10.20 3.39 1.45 0.00 12.90 0.00 1.82 5.00 0.00 0.00 0.00 0.00 1.33 2.65 0.00 0.00 NA 0.00 0.00 1.33 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Pitslre,I_chr3L_20764965_20765781,I_chr3L_20764965_20766192,I_chr3L_20764965_20766212,I_chr3L_20766064_20766192,I_chr3L_20766064_20766215,RI_chr3L_20766064_20766893,I_chr3L_20766311_20766664,I_chr3L_20766311_20766893,I_chr3L_20766773_20766893 chr3L + chr3L_20764709_20766893 chr3L_20764965_20766893 chr3L_20766894_20766993;chr3L_20764640_20764708 100.00 100.00 100.00 100.00 94.12 95.24 100.00 96.88 97.56 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 95.00 95.83 97.37 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 94.74 100.00 K jcn_only_AD CG2201,I_chr2L_21618111_21618314 chr2L - chr2L_21618111_21618708 chr2L_21618111_21618495 chr2L_21618011_21618110;chr2L_21618709_21618749 84.00 NA NA NA NA NA NA 95.65 84.00 NA NA NA NA NA NA NA NA NA NA 82.61 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 84.00 NA NA NA NA NA NA 89.29 NA NA NA NA NA NA NA NA NA K alternative_donor CG12655,I_chrX_19852934_19853195 chrX - chrX_19852934_19853333 chrX_19852934_19853195 chrX_19852834_19852933;chrX_19853334_19853626 0.49 0.37 0.00 1.22 0.00 0.00 0.49 0.87 0.69 0.00 0.00 0.98 1.22 0.00 0.49 3.37 0.55 0.76 0.73 0.80 0.00 0.51 0.00 0.33 1.34 0.59 0.81 0.00 2.14 0.00 0.92 0.00 0.53 0.98 1.27 0.77 0.18 0.32 0.25 0.00 0.00 1.06 0.00 0.24 0.94 0.00 1.02 0.57 0.00 0.00 0.65 0.00 0.00 0.00 1.01 0.28 0.31 0.75 K jcn_only_AD Tak1,I_chrX_20388150_20389255 chrX - chrX_20388150_20392250;chrX_20388150_20389255 chrX_20388150_20388725 chrX_20388050_20388149;chrX_20392251_20392299 36.96 36.31 41.59 30.30 39.47 34.74 41.67 32.33 43.48 40.78 42.48 32.89 36.96 44.23 43.12 47.37 39.42 45.96 37.93 36.33 32.54 38.08 38.41 32.68 44.23 44.34 33.95 44.68 32.45 34.04 38.52 31.96 28.25 35.84 34.95 44.44 27.78 30.12 33.90 34.97 35.05 38.34 30.48 41.96 22.60 39.74 46.67 35.42 33.49 36.96 51.41 45.45 43.75 34.69 42.38 31.61 50.22 29.51 K jcn_only_AA Flo-2 chrX + chrX_14818447_14820768;chrX_14818447_14820798;chrX_14818447_14819678 chrX_14818447_14824779 chrX_14818259_14818446 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.00 3.77 0.00 NA 11.11 1.92 1.79 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 3.33 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 K alternative_acceptor CG4078,I_chrX_5645012_5645067,F_chrX_5650884_5651894 chrX + chrX_5645012_5645096 chrX_5645012_5645067 chrX_5644912_5645011;chrX_5645097_5645167 5.96 NA NA NA NA NA NA NA 14.29 NA NA 6.67 NA NA NA NA NA NA NA NA NA NA 5.26 0.00 NA NA 25.00 NA NA NA NA NA NA 27.27 NA NA 6.67 NA NA 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA NA 7.69 0.00 NA NA NA NA NA NA 6.67 N alternative_donor Lag1,RI_chrX_6153758_6153930,I_chrX_6153758_6155077,RI_chrX_6153758_6161036,I_chrX_6160751_6160887,I_chrX_6160907_6161036 chrX - chrX_6153758_6155077;chrX_6153758_6154631;chrX_6153758_6153930;chrX_6153758_6154193;chrX_6153758_6154358;chrX_6153758_6160439 chrX_6153758_6161036 chrX_6153658_6153757;chrX_6161037_6161136 0.43 0.41 0.00 1.16 0.56 0.52 0.00 0.27 0.19 0.64 2.43 0.25 0.46 0.48 0.00 1.00 0.51 0.46 1.27 0.19 0.46 0.37 0.29 0.00 0.52 0.52 0.37 0.99 0.53 0.00 0.46 1.05 0.27 0.53 0.93 0.00 0.32 0.44 0.36 0.99 0.43 0.89 0.51 0.00 0.49 0.00 0.41 0.31 0.23 0.84 0.32 0.00 0.00 1.69 0.00 0.96 0.00 0.00 K intron_retention pds5,RI_chr2R_7915738_7915799,I_chr2R_7922306_7922992 chr2R + chr2R_7915738_7916057 chr2R_7915737_7915738;chr2R_7916057_7916058 chr2R_7915638_7915737;chr2R_7916058_7916160 13.38 15.38 11.54 23.53 12.50 NA 17.50 4.17 11.11 13.04 14.29 12.20 29.41 NA 10.71 0.00 NA 29.41 NA 7.35 10.00 12.82 6.45 9.52 24.24 16.67 25.00 33.33 19.05 20.00 11.76 NA 16.39 13.64 12.50 28.21 15.56 8.33 15.38 12.73 28.57 13.11 23.08 9.52 20.00 15.38 17.65 5.56 9.30 NA 12.50 7.14 13.04 20.00 10.71 NA 14.29 16.67 K jcn_only_AD vsg,I_chr3L_9707724_9708265 chr3L + chr3L_9707496_9707605 chr3L_9707500_9707605 chr3L_9707606_9707723;chr3L_9707406_9707495 96.32 96.34 96.70 97.19 95.44 96.57 96.97 96.06 96.89 96.32 97.40 95.93 96.68 94.66 95.08 96.64 96.32 97.05 96.04 95.79 97.55 96.17 95.19 96.77 96.20 94.83 97.71 95.28 94.74 95.42 96.66 95.42 95.51 96.77 94.84 94.66 97.20 98.10 97.06 95.21 96.13 96.17 95.83 97.17 96.62 96.28 96.32 94.18 97.01 97.50 96.53 98.41 95.77 98.86 95.47 96.62 97.69 96.78 K alternative_acceptor CG10737 chr2R + chr2R_15062754_15063770;chr2R_15062754_15063692 chr2R_15062754_15063752 chr2R_15062592_15062753;chr2R_15063771_15063852 5.88 8.08 8.49 10.34 7.69 2.30 13.00 3.18 7.48 2.56 4.76 6.47 4.26 4.60 2.06 13.89 3.12 5.31 3.06 7.80 13.21 15.31 5.08 3.85 3.12 5.61 4.00 10.00 1.72 6.02 5.04 1.67 32.23 12.08 9.21 3.33 5.74 7.45 4.90 6.38 1.61 8.37 13.58 2.70 14.29 1.64 2.94 9.72 8.43 5.49 6.03 8.22 8.05 5.88 4.31 10.71 5.00 6.96 K alternative_donor exo84 chr3R - chr3R_21877640_21877695 chr3R_21877640_21877692 chr3R_21877309_21877639;chr3R_21877696_21877851 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 1.08 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Crk,RI_chr4_231302_233315,I_chr4_231307_232253 chr4 + chr4_233356_233449 chr4_233356_233416 chr4_233316_233355;chr4_233450_233734 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 95.83 100.00 100.00 94.12 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 K intron_retention CG15611,I_chr2R_12996782_13000822 chr2R + chr2R_12996467_12996573 chr2R_12996466_12996467;chr2R_12996573_12996574 chr2R_12996353_12996466;chr2R_12996574_12996781 100.00 94.44 100.00 100.00 100.00 100.00 95.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 NA 100.00 94.74 100.00 100.00 100.00 100.00 100.00 NA 100.00 94.74 100.00 95.00 100.00 100.00 100.00 94.74 88.89 100.00 93.33 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 97.22 100.00 94.12 100.00 100.00 NA 100.00 100.00 92.31 100.00 K intron_retention Hrb98DE,I_chr3R_24425722_24426084,I_chr3R_24425722_24428493,I_chr3R_24426291_24426781,I_chr3R_24426737_24426805,snoRNA:Psi28S-3405a,snoRNA:Psi28S-3305a,snoRNA:Psi28S-3405b,snoRNA:Psi28S-3405c,snoRNA:Psi28S-3305b,snoRNA:Psi28S-3405d,RI_chr3R_24429041_24431183 chr3R + chr3R_24425722_24426427 chr3R_24425721_24425722;chr3R_24426427_24426428 chr3R_24425622_24425721;chr3R_24426428_24426917 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 4.08 0.00 0.00 0.00 1.92 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 2.94 0.00 0.00 8.70 NA NA 0.00 0.00 0.00 NA 0.00 K jcn_only_AD M(2)21AB,I_chr2L_107839_110405,I_chr2L_107957_108587,I_chr2L_110878_111037,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_108347_108587;chr2L_108227_108587;chr2L_107839_108587 chr2L_108102_108587 chr2L_108588_108687;chr2L_107833_107838 2.54 3.55 2.02 2.93 1.56 1.34 3.33 4.91 1.62 2.54 4.47 4.82 1.35 3.90 2.70 4.82 1.37 3.37 2.63 3.44 2.27 1.81 1.91 2.95 3.56 1.32 1.04 2.93 2.38 2.94 2.30 4.27 9.68 2.30 1.55 2.26 2.06 0.65 1.47 4.17 13.83 3.49 2.65 1.58 2.44 8.12 1.65 7.73 2.76 2.29 1.31 1.75 2.14 2.60 4.55 2.17 1.66 2.70 K alternative_donor I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863 chr3R - chr3R_17197790_17200781 chr3R_17197790_17197863 chr3R_17197765_17197789;chr3R_17200782_17200881 75.00 65.00 92.31 78.95 66.67 73.33 72.22 65.00 75.00 77.78 90.00 75.86 88.89 69.23 72.22 82.35 72.73 90.91 73.33 87.88 75.00 86.67 72.00 69.57 76.92 75.00 81.25 66.67 71.43 77.78 100.00 93.33 74.19 72.73 69.23 92.86 82.14 66.67 74.07 79.41 70.59 80.77 66.67 66.67 75.00 77.78 77.78 70.00 87.50 81.25 68.18 76.92 92.86 70.00 80.00 69.57 81.25 68.97 K intron_retention CG33691_CG33692,CG33691 chrX + chrX_6772517_6772578 chrX_6772516_6772517;chrX_6772578_6772579 chrX_6771947_6772516;chrX_6772579_6774300 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor HP5 chrX + chrX_11350521_11350687 chrX_11350521_11350617 chrX_11349315_11350520;chrX_11350688_11350915 17.09 24.00 4.55 54.55 21.43 9.52 27.27 18.52 20.00 9.09 25.00 19.51 35.29 15.38 10.00 15.38 20.00 18.75 17.65 19.51 25.00 18.52 9.09 21.43 22.22 46.15 19.05 4.76 8.33 8.33 18.52 NA 12.50 28.57 20.00 23.53 8.82 11.54 16.67 11.11 30.77 12.20 5.56 4.76 23.08 12.50 20.00 17.50 20.00 5.88 16.00 8.70 0.00 10.00 14.29 5.00 16.67 7.14 K intron_retention Myb,RI_chrX_15752571_15753225 chrX - chrX_15751579_15751709 chrX_15751578_15751579;chrX_15751709_15751710 chrX_15749823_15751578;chrX_15751710_15751876 98.55 95.83 100.00 98.18 95.00 96.30 97.78 98.70 100.00 100.00 94.44 100.00 100.00 96.67 96.67 98.53 96.67 96.00 100.00 95.52 87.50 100.00 100.00 100.00 100.00 96.15 100.00 93.75 95.83 94.44 100.00 92.86 96.55 98.57 94.44 100.00 94.74 93.75 100.00 100.00 93.33 98.25 100.00 100.00 93.75 100.00 100.00 100.00 98.55 100.00 100.00 100.00 94.74 92.86 100.00 100.00 100.00 97.14 K intron_retention Acf1,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27623461_27623517 chr3R_27623460_27623461;chr3R_27623517_27623518 chr3R_27621993_27623460;chr3R_27623518_27624355 100.00 100.00 98.33 98.57 100.00 100.00 100.00 98.88 100.00 100.00 97.62 99.18 100.00 100.00 100.00 100.00 100.00 100.00 97.01 100.00 100.00 100.00 98.78 100.00 100.00 98.39 98.59 100.00 100.00 100.00 100.00 100.00 98.70 98.98 100.00 100.00 100.00 100.00 100.00 98.47 98.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,I_chr2R_20289332_20290093 chr2R - chr2R_20288968_20289185 chr2R_20289009_20289185 chr2R_20289186_20289285;chr2R_20288868_20288967 94.64 100.00 94.55 88.80 96.00 94.92 97.12 96.18 89.83 93.48 96.23 92.79 94.81 100.00 94.44 94.44 91.30 100.00 93.81 97.14 84.31 86.96 95.83 96.00 100.00 90.54 95.52 91.11 93.10 97.87 95.88 NA 91.03 97.32 94.55 95.56 95.08 94.87 100.00 94.68 94.59 92.00 98.39 91.94 91.67 87.80 NA 95.40 94.44 94.23 93.75 95.45 85.19 NA 90.35 97.22 80.00 95.45 K intron_retention AP-1sigma,I_chr3R_19786283_19787772 chr3R + chr3R_19785316_19787772 chr3R_19785315_19785316;chr3R_19787772_19787773 chr3R_19785178_19785315;chr3R_19787773_19787872 37.14 30.77 42.86 38.46 29.27 30.77 55.88 40.00 35.16 12.00 63.16 40.00 71.43 40.48 50.00 39.68 31.25 37.14 41.67 36.92 52.63 26.47 33.96 20.69 50.00 47.50 46.34 50.00 38.71 50.00 35.56 14.81 12.12 37.66 43.33 42.31 46.88 44.00 29.03 42.50 25.93 37.21 44.44 22.22 21.88 17.31 25.64 24.14 39.51 23.08 35.71 34.78 15.15 17.65 40.00 21.21 15.91 8.00 K intron_retention F_chr2L_15260838_15261717,cul-3 chr2L - chr2L_15266527_15266595 chr2L_15266526_15266527;chr2L_15266595_15266596 chr2L_15266029_15266526;chr2L_15266596_15266734 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 1.35 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette klett chrX - chrX_21499782_21501000 chrX_21499782_21499946;chrX_21500820_21501000 chrX_21499947_21500819 chrX_21499389_21499781;chrX_21501001_21501058 92.93 97.96 92.98 77.94 93.18 91.84 87.25 90.43 94.17 86.67 91.67 92.71 79.66 93.44 92.98 88.51 88.24 95.24 92.06 93.75 90.24 75.00 93.26 94.92 92.59 86.79 96.15 88.64 84.44 91.43 94.26 93.55 93.18 89.32 90.38 93.85 98.25 97.30 95.52 92.93 86.84 93.33 89.80 97.40 91.43 93.85 95.56 89.86 92.86 96.23 98.72 94.74 94.12 91.67 96.83 88.10 97.50 89.83 K alternative_donor Tak1,I_chrX_20388150_20389255 chrX - chrX_20388150_20388725;chrX_20388150_20389255 chrX_20388150_20392250 chrX_20388050_20388149;chrX_20392251_20392299 82.00 87.50 82.14 88.64 87.04 80.77 80.22 80.77 84.57 82.69 79.31 86.99 77.55 82.00 81.13 75.00 84.31 81.69 79.03 84.38 84.72 80.95 86.08 86.05 82.00 79.25 86.21 70.42 81.13 83.33 80.28 78.95 85.25 81.82 83.33 79.69 92.76 89.66 89.17 79.05 74.58 83.59 85.00 81.94 85.71 72.84 80.52 65.52 83.19 82.76 79.45 82.22 82.22 87.76 81.94 87.80 81.63 73.42 K alternative_donor CG31673,RI_chr2L_20830210_20830280 chr2L + chr2L_20830794_20830860 chr2L_20830797_20830860 chr2L_20830861_20830928;chr2L_20830728_20830793 98.31 97.87 99.09 97.30 97.67 100.00 97.25 98.56 99.40 100.00 98.39 97.50 100.00 97.85 98.95 98.53 100.00 98.65 96.84 99.19 98.78 96.77 95.00 96.61 98.53 98.80 97.80 98.67 98.31 98.44 97.41 98.67 95.70 97.37 98.72 98.68 98.28 100.00 98.06 95.30 98.91 98.82 94.12 98.39 95.79 100.00 99.14 95.60 96.48 97.81 99.01 94.87 96.59 100.00 98.15 97.95 98.29 96.82 K jcn_only_AD RpL15 chr3LHet + chr3LHet_2397859_2398049;chr3LHet_2397820_2398049 chr3LHet_2397992_2398049 chr3LHet_2398050_2398052;chr3LHet_2397802_2397819 91.29 100.00 100.00 79.63 NA NA 98.16 85.71 98.46 NA NA 94.74 100.00 96.88 NA 87.32 92.00 95.00 87.10 91.84 NA 87.23 95.83 100.00 100.00 91.67 NA 40.00 72.50 NA 62.71 64.10 70.00 84.21 95.24 NA NA NA NA 44.93 60.87 78.57 90.91 68.00 72.73 80.00 96.55 52.50 84.06 100.00 100.00 NA NA 95.65 NA 94.59 100.00 47.37 K intron_retention CG1814,Updo chr2R + chr2R_5467872_5467956 chr2R_5467871_5467872;chr2R_5467956_5467957 chr2R_5467468_5467871;chr2R_5467957_5468252 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 3.77 0.00 4.55 0.00 0.00 0.00 0.00 5.00 NA 8.00 0.00 4.94 0.00 0.00 0.00 4.65 4.17 0.00 5.26 0.00 0.00 0.00 0.00 0.00 3.39 5.71 0.00 0.00 6.12 0.00 1.92 3.12 4.76 3.39 0.00 8.33 6.82 0.00 2.78 7.55 1.69 7.50 3.77 0.00 0.00 2.94 3.23 9.52 0.00 0.00 K alternative_acceptor Lasp,I_chr3L_16671761_16673911,R_chr3L_16672970_16673911,RI_chr3L_16674471_16704042 chr3L - chr3L_16672970_16673911;chr3L_16672574_16673911 chr3L_16673033_16673911 chr3L_16673912_16674011;chr3L_16671908_16672573 94.77 94.40 94.86 85.71 96.98 94.77 91.32 94.84 94.85 96.21 88.94 90.34 100.00 95.65 95.67 94.14 97.48 91.21 98.45 94.51 89.89 85.76 93.76 96.30 95.18 93.48 95.29 95.22 89.45 93.85 95.15 96.30 94.86 94.13 94.48 98.48 93.78 93.22 96.12 93.94 93.97 95.07 96.21 95.15 85.59 96.91 92.23 95.51 95.20 93.87 94.24 93.87 96.75 93.18 94.33 96.00 90.94 96.89 K intron_retention CG32521,I_chrX_21077138_21082106,I_chrX_21077612_21082713,EI_chrX_21080561_21082106,I_chrX_21080906_21082713,CREF_chrX_21082827_21152068,EF_chrX_21094675_21152068 chrX - chrX_21080906_21082106 chrX_21080905_21080906;chrX_21082106_21082107 chrX_21080838_21080905;chrX_21082107_21082206 53.85 53.85 53.85 NA NA 90.00 81.25 NA 57.69 66.67 NA 65.00 NA 46.15 66.67 41.67 90.00 40.00 69.23 81.25 63.64 28.99 50.00 58.82 81.82 NA 60.00 21.05 40.91 46.15 70.00 NA 39.39 47.37 46.15 NA 50.00 42.86 42.86 63.64 63.64 65.00 NA 52.17 36.00 58.33 NA 66.67 70.59 40.00 63.64 25.00 NA NA 52.63 46.15 46.15 55.56 K alternative_donor CG15601 chrX + chrX_15605352_15605541 chrX_15605490_15605541 chrX_15605542_15606219;chrX_15605050_15605351 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 93.75 100.00 100.00 100.00 100.00 100.00 100.00 81.82 100.00 100.00 100.00 92.31 85.71 100.00 100.00 100.00 NA 100.00 85.71 83.33 100.00 87.50 100.00 85.71 100.00 100.00 83.33 NA 84.62 100.00 100.00 90.91 100.00 100.00 83.33 100.00 100.00 100.00 100.00 100.00 93.33 100.00 87.50 100.00 80.00 100.00 90.91 87.50 100.00 90.91 K multi_cassette lig,I_chr2R_3960977_3961116,I_chr2R_3960977_3961119,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3960284_3961104 chr2R_3960284_3960631;chr2R_3960740_3960871;chr2R_3960977_3961104 chr2R_3960632_3960739;chr2R_3960872_3960976 chr2R_3959868_3960283;chr2R_3961105_3961205 98.22 98.58 98.48 99.65 98.48 97.87 95.69 99.60 97.44 92.59 97.02 100.00 99.30 99.34 98.16 99.48 97.52 99.35 100.00 98.56 97.96 98.22 98.78 97.65 96.86 94.58 98.49 99.41 98.02 98.70 95.11 97.25 96.07 98.59 99.54 98.34 97.92 99.68 98.79 97.35 92.44 97.03 98.68 98.51 93.33 95.39 98.60 94.72 97.43 98.96 98.93 98.89 97.47 97.42 98.49 97.08 98.03 97.46 K intron_retention CG1319,RI_chr3L_4292594_4292646,I_chr3L_4292741_4292830,F_chr3L_4292778_4292830 chr3L + chr3L_4292743_4292830 chr3L_4292742_4292743;chr3L_4292830_4292831 chr3L_4292678_4292742;chr3L_4292831_4292930 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention Karl,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11682370_11682812 chrX_11682369_11682370;chrX_11682812_11682813 chrX_11682363_11682369;chrX_11682813_11683136 50.00 46.15 NA NA NA NA 50.00 50.00 100.00 NA 26.67 100.00 14.29 57.14 50.00 58.82 NA NA 100.00 45.45 30.77 NA NA NA NA 46.15 NA NA NA NA 100.00 NA NA 64.71 100.00 NA NA NA NA NA NA 42.86 41.67 NA NA NA NA NA 60.00 NA 42.11 NA NA NA 41.67 NA 100.00 NA K intron_retention didum,I_chr2R_3393005_3393348 chr2R + chr2R_3392221_3392279 chr2R_3392220_3392221;chr2R_3392279_3392280 chr2R_3391334_3392220;chr2R_3392280_3392806 0.00 0.00 0.00 12.50 0.00 0.00 3.12 4.08 2.27 NA 0.00 0.00 0.00 0.00 0.00 2.00 NA 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 2.94 NA 0.00 0.00 3.45 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 NA 0.00 0.00 0.00 0.00 K cassette ham chr2L - chr2L_18776375_18779804 chr2L_18776375_18776471;chr2L_18776604_18779804 chr2L_18776472_18776603 chr2L_18776149_18776374;chr2L_18779805_18780331 54.74 47.37 52.83 13.16 58.82 51.22 34.92 60.56 50.93 69.23 96.97 50.00 68.75 59.52 45.00 66.10 63.41 50.00 55.00 54.62 97.06 65.71 44.90 51.61 47.83 43.90 65.52 47.06 35.71 65.38 58.06 61.54 57.58 60.23 50.00 17.24 54.55 50.00 50.00 59.18 66.67 50.46 50.00 68.18 39.13 61.90 68.18 50.00 54.74 63.16 58.70 57.14 53.33 43.75 62.26 41.67 59.09 72.73 K multi_cassette dlg1,I_chrX_11298230_11299306 chrX + chrX_11292856_11299306 chrX_11292856_11293774;chrX_11293850_11294820;chrX_11294866_11299306 chrX_11293775_11293849;chrX_11294821_11294865 chrX_11292753_11292855;chrX_11299307_11299406 100.00 100.00 100.00 100.00 100.00 100.00 88.89 97.73 100.00 94.12 83.33 100.00 93.33 100.00 96.43 100.00 100.00 96.77 96.30 100.00 100.00 97.83 97.22 100.00 100.00 100.00 92.59 97.22 94.44 100.00 100.00 100.00 98.00 98.18 100.00 91.67 97.14 100.00 100.00 97.22 100.00 100.00 93.75 97.22 95.00 93.75 100.00 96.43 100.00 100.00 100.00 96.15 100.00 93.33 100.00 94.44 88.89 100.00 K jcn_only_AD CG17912,I_chr2L_16748617_16749055,I_chr2L_16749189_16749266 chr2L + chr2L_16746617_16749055 chr2L_16748617_16749055 chr2L_16749056_16749155;chr2L_16746227_16746616 4.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 3.70 7.14 NA NA NA 4.55 0.00 NA NA NA NA NA NA NA 9.09 12.00 3.23 NA NA NA NA 23.81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG7394,I_chr3L_11556335_11556402 chr3L + chr3L_11556201_11556402 chr3L_11556335_11556402 chr3L_11556403_11556502;chr3L_11555961_11556200 0.00 0.00 0.00 0.43 0.00 1.95 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.88 0.00 0.00 0.84 0.00 0.00 0.54 0.00 0.00 0.43 0.39 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.57 0.00 0.00 0.00 0.57 0.50 0.00 0.00 K jcn_only_AA CG31122 chr3R - chr3R_14233936_14233996 chr3R_14233939_14233996 chr3R_14233997_14234162;chr3R_14233613_14233935 23.53 28.85 17.00 25.93 18.48 23.29 23.60 18.69 16.27 30.77 28.77 24.46 19.12 14.63 18.09 26.74 36.07 16.67 19.40 18.75 23.94 21.32 27.72 36.70 23.53 16.22 26.28 28.32 18.40 20.13 28.05 27.03 22.91 21.74 26.73 23.85 27.84 23.14 26.46 26.51 26.19 15.43 19.70 22.58 30.40 17.43 19.83 26.61 18.44 30.53 17.61 27.00 20.83 26.13 22.47 19.72 24.10 28.16 K intron_retention CG1622,REI_chrX_13191277_13191339,I_chrX_13191916_13192167,I_chrX_13192409_13192738,EI_chrX_13192857_13192928 chrX + chrX_13191916_13192167 chrX_13191915_13191916;chrX_13192167_13192168 chrX_13191816_13191915;chrX_13192168_13192202 93.09 94.12 90.00 88.89 NA NA 95.00 91.67 93.75 NA NA 96.00 NA 88.89 91.67 NA NA 92.86 100.00 100.00 100.00 78.95 84.00 95.00 93.75 92.31 89.47 84.62 96.88 72.22 94.44 85.71 84.62 100.00 93.33 100.00 92.31 85.71 96.00 95.45 95.45 93.75 NA 94.12 90.91 96.30 88.24 92.00 92.86 94.44 95.45 90.00 91.67 85.71 100.00 87.50 NA 93.33 K intron_retention Pglym78,Rpn2 chr3R + chr3R_24975229_24975290 chr3R_24975228_24975229;chr3R_24975290_24975291 chr3R_24974731_24975228;chr3R_24975291_24975977 0.58 0.00 0.63 1.26 0.00 0.00 0.38 0.00 0.00 0.53 0.00 1.09 0.00 0.00 0.00 0.00 0.00 2.34 0.00 0.00 0.00 2.52 1.25 0.00 0.58 0.00 1.60 2.78 1.78 2.08 0.53 1.23 2.35 0.39 0.00 0.56 1.64 0.83 1.14 0.00 1.22 0.95 0.00 0.76 0.00 1.66 1.58 1.64 1.28 1.01 1.19 1.30 0.00 0.00 1.31 1.85 0.00 0.81 K cassette Amph,I_chr2R_8498227_8498492 chr2R + chr2R_8495684_8498083 chr2R_8495684_8496733;chr2R_8497142_8498083 chr2R_8496734_8497141 chr2R_8495584_8495683;chr2R_8498084_8498226 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 97.67 100.00 100.00 100.00 100.00 97.78 100.00 99.24 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG42348,I_chr3L_20147245_20147306,I_chr3L_20149990_20151579 chr3L - chr3L_20147245_20147303 chr3L_20147244_20147245;chr3L_20147303_20147304 chr3L_20147177_20147244;chr3L_20147304_20147366 0.00 1.65 0.00 1.94 0.00 0.00 2.44 1.24 0.82 0.00 0.00 1.29 0.00 0.00 1.75 0.88 0.00 0.00 0.00 1.08 0.00 0.00 2.86 0.75 0.00 0.00 3.25 1.82 0.00 0.00 0.00 0.50 0.76 1.01 0.00 0.00 1.44 0.00 0.00 0.48 1.59 0.85 1.27 0.00 0.00 1.10 0.00 0.85 1.46 0.00 0.74 0.00 0.00 2.73 0.71 0.00 0.00 0.32 K alternative_donor skd chr3L - chr3L_21018649_21020395;chr3L_21018649_21019229;chr3L_21018649_21020239 chr3L_21018649_21020285 chr3L_21018052_21018648;chr3L_21020396_21020501 9.16 NA NA 25.00 NA NA 27.27 0.00 0.00 NA NA 0.00 0.00 14.29 NA 11.76 NA NA NA 0.00 NA 0.00 37.50 NA NA NA 25.00 NA 20.00 0.00 NA NA 0.00 0.00 NA 0.00 NA NA NA 40.00 NA 8.33 0.00 25.00 NA NA NA 14.29 10.00 NA NA NA NA NA 50.00 NA NA NA K intron_retention CG3191,CG3091,I_chrX_2147635_2147990 chrX - chrX_2145128_2145227 chrX_2145127_2145128;chrX_2145227_2145228 chrX_2145046_2145127;chrX_2145228_2145383 36.22 NA NA 43.75 NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA 54.55 NA NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA K alternative_donor CG13384 chr2L + chr2L_8384517_8384699 chr2L_8384541_8384699 chr2L_8384700_8384895;chr2L_8384486_8384516 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA 100.00 K alternative_donor CG17737,I_chr3L_3223527_3224313,I_chr3L_3223943_3224313 chr3L + chr3L_3223415_3223474 chr3L_3223422_3223474 chr3L_3223475_3223526;chr3L_3223400_3223414 92.86 91.67 85.29 91.87 92.68 88.37 94.74 93.10 94.54 100.00 88.89 88.30 81.16 94.74 88.33 92.90 93.55 86.54 92.05 83.33 84.62 100.00 100.00 97.06 100.00 98.41 100.00 90.91 100.00 100.00 86.15 92.31 NA 92.05 92.86 NA 100.00 93.75 100.00 95.00 100.00 89.31 87.14 100.00 92.31 90.91 84.00 60.00 89.08 95.83 94.74 95.45 88.89 100.00 90.14 100.00 97.18 73.33 K intron_retention CG34159,I_chr2L_10203661_10204065 chr2L - chr2L_10203661_10204171 chr2L_10203660_10203661;chr2L_10204171_10204172 chr2L_10203561_10203660;chr2L_10204172_10204359 0.00 0.00 4.55 1.85 0.00 0.00 0.00 5.17 1.10 0.00 0.00 2.50 0.00 2.27 3.39 3.57 0.00 0.00 0.00 0.00 0.00 2.34 0.00 1.27 2.63 6.90 0.00 1.47 3.12 0.00 0.00 2.47 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 2.08 2.38 0.00 0.00 0.00 0.00 2.04 0.00 2.94 0.00 1.02 0.00 0.00 0.00 0.00 2.27 0.00 0.00 K alternative_donor mys,I_chrX_7958795_7961094 chrX + chrX_7955904_7957872;chrX_7955908_7957872;chrX_7955914_7957872;chrX_7955759_7957872;chrX_7956114_7957872;chrX_7955901_7957872;chrX_7955967_7957872 chrX_7956125_7957872 chrX_7957873_7958492;chrX_7955741_7955758 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive gish,RI_chr3R_12118557_12122383 chr3R + chr3R_12118557_12121393,chr3R_12121543_12122383 chr3R_12118557_12119708,chr3R_12119876_12122383 chr3R_12121394_12121542 chr3R_12119709_12119875 chr3R_12118496_12118556;chr3R_12122384_12122483 53.62 46.34 48.94 60.27 57.14 50.00 60.81 56.52 53.85 38.10 56.00 45.56 54.55 60.47 57.78 51.81 57.50 61.29 53.57 38.37 63.33 53.85 57.75 52.17 51.52 54.29 52.00 58.06 53.12 41.67 45.83 50.00 52.78 57.14 45.16 42.50 50.00 53.85 54.55 53.62 50.00 53.33 50.00 50.88 53.85 52.17 48.65 46.34 53.76 54.55 58.46 54.76 45.45 55.56 58.70 62.07 55.88 47.37 K intron_retention bbc,REI_chr2R_9379401_9381986 chr2R - chr2R_9375415_9375478 chr2R_9375414_9375415;chr2R_9375478_9375479 chr2R_9374144_9375414;chr2R_9375479_9375637 0.00 0.00 0.26 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.74 0.52 0.00 0.00 0.00 0.00 0.25 0.00 0.29 0.00 0.17 0.00 0.00 1.09 1.96 0.15 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.21 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.22 K intron_retention CG2219,I_chr4_199813_199889,RI_chr4_202143_202194 chr4 - chr4_199507_199562 chr4_199506_199507;chr4_199562_199563 chr4_199463_199506;chr4_199563_199629 8.97 11.54 0.00 14.63 13.79 19.44 10.78 13.95 12.00 12.50 13.95 10.34 12.50 19.44 13.16 20.27 18.00 15.62 17.65 9.30 7.69 0.00 7.69 9.43 4.00 0.00 7.55 10.34 0.00 0.00 9.52 9.09 4.65 20.25 8.33 0.00 4.17 0.00 5.41 6.90 5.88 8.97 8.82 3.95 0.00 12.07 5.56 0.00 14.85 1.89 9.72 11.90 6.25 6.82 9.09 4.17 8.93 5.26 K intron_retention CG17660 chr2L - chr2L_1709105_1709173 chr2L_1709104_1709105;chr2L_1709173_1709174 chr2L_1708821_1709104;chr2L_1709174_1709332 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 1.39 4.88 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 2.13 N jcn_only_AA CG17119,sav chr3R - chr3R_18880054_18880450 chr3R_18880351_18880450 chr3R_18880451_18880553;chr3R_18880008_18880053 100.00 100.00 100.00 94.35 88.39 100.00 91.39 95.96 96.30 100.00 87.00 100.00 100.00 100.00 100.00 93.55 88.98 100.00 100.00 100.00 100.00 100.00 91.63 95.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.26 100.00 95.53 100.00 100.00 100.00 95.19 100.00 100.00 92.98 95.56 100.00 100.00 100.00 100.00 94.59 90.09 91.64 93.70 N alternative_donor CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806425_22807254;chr3R_22806725_22807254;chr3R_22806454_22807254 chr3R_22806824_22807254 chr3R_22807255_22807473;chr3R_22806325_22806424 33.33 39.80 31.25 34.58 36.76 25.68 29.93 31.07 36.75 43.48 37.29 40.00 31.95 26.46 32.96 29.95 39.55 27.74 33.01 27.09 32.84 34.85 33.03 35.44 30.65 24.67 50.88 47.06 40.00 40.00 31.82 26.87 41.30 30.70 29.67 35.56 36.11 27.91 36.73 43.93 25.42 28.97 28.49 41.27 22.73 44.05 32.31 40.86 34.78 42.22 35.25 36.51 22.41 34.00 29.27 33.33 39.47 24.77 N jcn_only_AA CG1416,I_chr2L_21758100_21758179,I_chr2L_21758143_21758183,I_chr2L_21758143_21758209 chr2L + chr2L_21758143_21758201;chr2L_21758143_21758209;chr2L_21758143_21758205 chr2L_21758143_21758183 chr2L_21758116_21758142;chr2L_21758210_21758279 0.00 0.00 0.00 2.04 0.00 1.61 1.61 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 2.12 0.00 2.35 2.08 1.05 0.00 0.00 2.50 1.85 0.00 0.00 0.00 1.30 0.00 0.96 0.00 NA 0.00 0.00 0.00 0.56 0.00 1.92 0.00 0.00 0.00 0.00 0.00 2.99 1.42 0.00 0.00 1.59 0.00 0.00 0.00 1.05 0.91 1.01 K alternative_acceptor CG32176,RI_chr3L_17427238_17427301 chr3L + chr3L_17427238_17427351 chr3L_17427238_17427288 chr3L_17427138_17427237;chr3L_17427352_17427401 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG15098,I_chr2R_14721290_14721355 chr2R - chr2R_14721290_14721469 chr2R_14721290_14721355 chr2R_14721190_14721289;chr2R_14721470_14721623 0.44 0.43 0.57 0.52 0.35 0.30 0.96 0.72 0.60 0.73 0.54 0.31 0.26 0.46 0.68 0.68 0.62 0.46 0.38 0.28 0.66 0.52 0.37 0.55 0.36 0.55 0.96 0.94 1.23 0.43 0.57 0.43 0.37 0.55 0.38 0.75 0.42 0.35 0.43 0.56 0.54 0.33 0.54 0.37 0.46 0.37 0.27 0.62 0.35 0.45 0.44 0.33 0.20 0.37 0.43 0.21 0.21 0.34 K jcn_only_AD smi35A,I_chr2L_14197587_14197656,E_chr2L_14222082_14233893,RI_chr2L_14233579_14233647 chr2L - chr2L_14197294_14197656 chr2L_14197294_14197362 chr2L_14196927_14197293;chr2L_14197657_14197756 2.78 2.13 0.00 0.00 2.94 3.12 5.26 1.89 2.80 0.00 17.39 1.43 10.91 0.00 2.56 1.79 2.63 17.14 2.70 3.41 2.86 8.33 3.61 1.79 3.03 0.00 1.54 2.78 11.11 5.36 0.00 0.00 1.41 2.78 3.92 1.54 4.29 3.39 0.00 5.56 NA 6.49 3.03 8.33 4.35 0.00 3.33 0.00 1.45 5.26 9.68 2.63 4.76 3.70 0.00 0.00 0.00 0.00 K jcn_only_AD Rab23,I_chr3R_1508710_1508882 chr3R - chr3R_1508710_1510597;chr3R_1508710_1511119 chr3R_1508710_1508882 chr3R_1508610_1508709;chr3R_1511120_1511186 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Trc8 chr3R - chr3R_25325981_25326038 chr3R_25325980_25325981;chr3R_25326038_25326039 chr3R_25325780_25325980;chr3R_25326039_25326220 0.00 0.00 0.00 0.00 0.00 0.00 1.39 1.33 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.05 0.00 1.48 0.78 0.00 0.00 0.00 1.49 0.00 2.82 1.27 1.33 0.00 1.49 0.00 0.00 0.00 2.00 2.02 1.22 0.00 0.00 0.79 0.00 0.00 0.00 1.92 0.95 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 1.30 0.00 K jcn_only_AD CG10462 chr2L - chr2L_19733070_19733162 chr2L_19733070_19733154 chr2L_19733001_19733069;chr2L_19733163_19733336 3.85 2.99 0.00 4.13 2.38 1.56 5.77 4.65 4.05 3.23 1.72 1.46 4.92 5.97 8.33 6.67 4.41 1.54 3.57 2.78 1.59 4.08 5.43 6.82 5.88 3.57 3.36 2.50 8.89 2.63 9.20 11.11 6.82 5.65 0.00 8.20 3.39 7.69 2.15 5.94 0.00 1.34 0.00 1.49 5.97 3.17 6.25 3.51 5.00 0.88 10.00 3.92 1.37 5.17 5.88 2.86 3.28 3.85 K intron_retention bigmax,E_chr3R_23113334_23113889 chr3R - chr3R_23113570_23113617 chr3R_23113569_23113570;chr3R_23113617_23113618 chr3R_23113507_23113569;chr3R_23113618_23113907 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.73 100.00 96.43 100.00 98.96 100.00 100.00 100.00 100.00 100.00 98.00 100.00 99.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.53 100.00 100.00 99.05 100.00 97.96 97.44 100.00 100.00 100.00 100.00 100.00 100.00 N intron_retention Aldolase,I_chr3R_22083764_22086684 chr3R - chr3R_22082030_22082256 chr3R_22082029_22082030;chr3R_22082256_22082257 chr3R_22081992_22082029;chr3R_22082257_22082345 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 84.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.95 73.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.23 100.00 100.00 100.00 100.00 61.54 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 69.23 100.00 62.50 K jcn_only_AA Cap-G,CG34439 chr2R + chr2R_9046609_9047235 chr2R_9046609_9047038 chr2R_9046522_9046608;chr2R_9047236_9047380 58.82 48.72 60.28 93.13 61.11 70.15 47.86 79.41 53.79 26.98 72.62 67.26 79.35 64.96 60.67 64.09 61.54 62.86 60.90 84.54 70.37 15.56 42.02 50.00 53.23 57.84 49.54 50.88 50.75 37.04 55.19 66.25 38.46 69.15 63.93 50.00 51.46 64.41 59.12 52.45 57.45 66.02 79.73 43.97 63.79 50.00 60.65 58.82 70.62 44.07 58.18 40.82 50.86 61.83 55.94 61.08 47.08 49.47 N intron_retention vir-1,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,I_chr2L_12421830_12423260 chr2L - chr2L_12421862_12423322 chr2L_12421861_12421862;chr2L_12423322_12423323 chr2L_12421641_12421861;chr2L_12423323_12423328 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 50.00 NA NA NA 57.14 NA 100.00 68.42 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA K alternative_acceptor F_chr3RHet_1879085_1900358,Alg-2 chr3RHet - chr3RHet_1898928_1898983;chr3RHet_1898930_1898983;chr3RHet_1898895_1898983 chr3RHet_1898919_1898983 chr3RHet_1898984_1899090;chr3RHet_1898558_1898894 0.00 0.00 4.76 0.00 0.00 6.06 0.00 2.74 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 4.00 0.00 0.00 0.00 12.50 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Usp7,I_chrX_11919055_11919146,I_chrX_11922059_11922456 chrX - chrX_11919079_11919146;chrX_11919055_11919146 chrX_11919091_11919146 chrX_11919147_11919211;chrX_11918989_11919054 72.41 86.05 74.07 76.19 72.97 70.00 62.50 73.40 75.22 71.43 73.53 70.45 71.74 72.22 75.93 71.62 71.15 70.21 70.31 67.68 74.36 62.26 91.67 69.39 61.54 68.00 81.58 85.71 59.26 75.68 71.15 70.83 72.88 80.90 68.75 58.33 76.60 72.97 79.55 73.21 56.25 74.77 74.36 79.59 68.97 72.92 74.47 62.50 70.10 81.82 75.00 72.41 68.42 70.00 75.38 71.88 74.47 64.58 K intron_retention Rheb,I_chr3R_1395050_1395121,RI_chr3R_1395455_1395563,CRMP chr3R + chr3R_1395194_1395563 chr3R_1395193_1395194;chr3R_1395563_1395564 chr3R_1395122_1395193;chr3R_1395564_1395663 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA K intron_retention Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046104 chr3L_16045250_16045251;chr3L_16046104_16046105 chr3L_16045216_16045250;chr3L_16046105_16046204 27.20 34.48 25.00 23.53 29.41 22.50 33.33 27.14 29.85 10.00 29.17 25.37 33.33 31.11 17.78 33.33 27.27 40.00 26.42 21.92 18.52 36.67 35.19 31.03 26.09 28.00 22.50 39.13 20.00 18.00 25.49 16.67 25.42 25.00 31.43 51.28 32.00 31.03 34.62 19.67 23.08 25.33 25.64 25.00 16.67 21.88 33.33 17.57 29.03 35.71 34.21 28.57 31.58 NA 34.00 22.73 35.71 8.93 N jcn_only_AA CG1416,I_chr2L_21758100_21758179,I_chr2L_21758143_21758183,I_chr2L_21758143_21758209 chr2L + chr2L_21758143_21758201;chr2L_21758143_21758209;chr2L_21758143_21758183 chr2L_21758143_21758205 chr2L_21758116_21758142;chr2L_21758210_21758279 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.30 13.89 25.00 0.00 8.53 0.00 17.91 23.73 17.76 0.00 13.98 0.00 8.47 0.00 0.00 0.00 10.53 0.00 0.00 0.00 0.00 0.00 0.00 14.47 0.00 0.00 13.46 0.00 NA 0.00 0.00 15.73 13.48 0.00 14.42 0.00 0.00 0.00 0.00 15.48 0.00 13.48 0.00 0.00 14.29 0.00 0.00 10.00 0.00 11.82 10.10 K jcn_only_AD Csk,I_chr3R_7463337_7463512,I_chr3R_7468917_7472437,I_chr3R_7468917_7472509,I_chr3R_7468928_7472509 chr3R - chr3R_7468928_7472509 chr3R_7468928_7472437 chr3R_7468892_7468927;chr3R_7472510_7472537 42.86 NA NA NA NA NA NA NA 37.14 NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 44.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor SelR,I_chr3R_6691367_6692250,I_chr3R_6692461_6692530,I_chr3R_6694098_6694160 chr3R - chr3R_6689548_6692250 chr3R_6689581_6692250 chr3R_6692251_6692350;chr3R_6689071_6689547 14.04 10.47 11.11 29.79 6.52 6.82 9.52 12.31 11.43 18.87 9.52 9.30 17.65 13.79 12.68 17.07 0.00 18.75 10.53 14.04 9.68 15.38 20.00 15.07 16.67 18.18 19.35 14.29 16.00 16.42 17.50 17.39 19.23 12.86 22.92 35.71 15.75 17.86 8.40 17.70 14.04 13.79 12.20 12.20 16.87 13.68 8.45 17.95 9.64 10.00 10.67 14.29 7.27 14.67 11.32 15.19 10.98 18.75 K jcn_only_AD spi,I_chr2L_19569183_19577185,I_chr2L_19569227_19572142,I_chr2L_19569227_19577173 chr2L - chr2L_19571768_19577185 chr2L_19571768_19577173 chr2L_19571572_19571767;chr2L_19577186_19577273 2.94 3.75 3.19 1.93 2.78 1.42 3.21 4.67 2.56 0.00 5.47 4.29 2.10 4.07 3.85 3.19 2.50 4.55 2.99 2.90 6.18 0.00 4.13 5.66 1.71 2.04 4.68 8.51 7.35 4.15 2.08 3.23 2.94 3.51 1.67 2.91 1.92 3.37 2.77 2.33 2.27 1.77 4.29 2.56 3.30 4.87 2.66 4.00 1.92 2.43 2.47 1.81 2.35 1.90 1.41 3.90 4.53 5.17 K cassette Ect4,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8098758_8101385 chr3L_8098758_8099115;chr3L_8100030_8101385 chr3L_8099116_8100029 chr3L_8098658_8098757;chr3L_8101386_8101485 99.48 98.51 99.55 100.00 100.00 100.00 100.00 99.64 99.70 93.28 99.25 99.37 100.00 99.28 100.00 100.00 99.35 100.00 99.46 99.24 100.00 99.59 99.74 99.64 99.49 99.37 99.61 98.63 97.85 97.82 100.00 97.42 98.81 99.63 99.49 100.00 99.39 99.47 99.32 98.33 97.00 99.72 100.00 98.56 99.65 98.42 99.42 98.18 100.00 99.51 99.29 98.62 99.47 99.48 100.00 98.75 99.49 99.00 K multi_cassette CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2436229_2459590 chr3L_2436229_2439576;chr3L_2439831_2443389;chr3L_2443839_2443987;chr3L_2444088_2444498;chr3L_2446102_2459590 chr3L_2439577_2439830;chr3L_2443390_2443838;chr3L_2443988_2444087;chr3L_2444499_2446101 chr3L_2436209_2436228;chr3L_2459591_2459690 100.00 100.00 83.33 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 90.00 80.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 87.50 100.00 100.00 95.00 100.00 88.89 100.00 100.00 100.00 100.00 87.50 90.00 91.67 87.50 92.86 92.31 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 90.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 K intron_retention l(3)82Fd,I_chr3R_1147660_1148709 chr3R - chr3R_1120602_1121362 chr3R_1120601_1120602;chr3R_1121362_1121363 chr3R_1120028_1120601;chr3R_1121363_1121517 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 2.82 0.00 1.56 0.00 0.00 0.00 0.00 4.26 6.25 7.41 0.00 4.55 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 K alternative_donor RpL23A,E_chr3L_1667550_1667808,I_chr3L_1667736_1667806 chr3L - chr3L_1667736_1667808 chr3L_1667736_1667806 chr3L_1667636_1667735;chr3L_1667809_1667906 0.01 0.00 0.02 0.01 0.00 0.01 0.05 0.01 0.02 0.00 0.00 0.01 0.01 0.02 0.01 0.00 0.00 0.00 0.03 0.01 0.00 0.01 0.03 0.00 0.05 0.03 0.10 0.11 0.01 0.00 0.03 0.00 0.02 0.01 0.03 0.00 0.02 0.00 0.02 0.01 0.03 0.01 0.00 0.00 0.01 0.01 0.00 0.01 0.03 0.00 0.03 0.02 0.00 0.01 0.01 0.01 0.01 0.01 K intron_retention f-cup,RI_chr3R_9522069_9522165,I_chr3R_9524004_9524059,EI_chr3R_9524613_9524789 chr3R - chr3R_9522069_9522548 chr3R_9522068_9522069;chr3R_9522548_9522549 chr3R_9521969_9522068;chr3R_9522549_9522949 0.00 0.00 4.76 18.18 NA 0.00 0.00 0.00 2.44 NA 0.00 0.00 4.76 NA 0.00 5.56 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.35 0.00 NA 0.00 5.88 0.00 0.00 7.14 0.00 NA NA 0.00 0.00 0.00 0.00 4.76 5.26 0.00 0.00 0.00 3.33 0.00 5.71 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Aats-val chr2R + chr2R_9086429_9086478;chr2R_9086421_9086478 chr2R_9086425_9086478 chr2R_9086479_9086689;chr2R_9086375_9086420 95.83 NA 100.00 100.00 NA NA NA NA 90.62 NA NA NA NA NA 95.83 76.19 NA NA NA 88.00 NA NA NA NA NA 95.45 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 93.10 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention VhaPPA1-1,I_chr3R_10728476_10728933,RI_chr3R_10728613_10728929,I_chr3R_10728645_10728933 chr3R - chr3R_10728613_10728933 chr3R_10728612_10728613;chr3R_10728933_10728934 chr3R_10728545_10728612;chr3R_10728934_10729029 0.00 0.00 0.25 0.15 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.46 0.23 0.23 0.00 0.63 0.99 0.69 0.00 0.00 0.00 0.32 0.00 0.37 0.00 0.00 0.00 0.31 0.33 0.35 0.43 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7927,I_chr3L_8109906_8110404 chr3L + chr3L_8105539_8105593 chr3L_8105538_8105539;chr3L_8105593_8105594 chr3L_8105212_8105538;chr3L_8105594_8105814 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 4.55 1.67 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 1.79 0.00 0.00 0.00 0.00 K cassette CG14425,Sxl,CG14425_Sxl,CEFI_chrX_6981717_6984166,CEF_chrX_6984538_6992033 chrX - chrX_6981693_6985706 chrX_6981693_6982610;chrX_6982801_6985706 chrX_6982611_6982800 chrX_6981647_6981692;chrX_6985707_6985745 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor I_chr2L_13965397_13965694,nimB3,RI_chr2L_13967695_13967746 chr2L - chr2L_13967668_13967750 chr2L_13967695_13967750 chr2L_13967751_13967841;chr2L_13967595_13967667 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 98.65 98.39 98.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG14613,I_chrX_21882735_21883714 chrX - chrX_21872815_21872977 chrX_21872814_21872815;chrX_21872977_21872978 chrX_21872350_21872814;chrX_21872978_21873123 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 1.30 0.00 0.00 3.90 5.26 3.70 5.26 5.00 0.00 0.00 0.00 0.00 2.86 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 3.45 0.00 0.00 0.00 K jcn_only_AA RpS7,E_chr3R_26032339_26034298,I_chr3R_26034115_26034211,I_chr3R_26034118_26034211 chr3R - chr3R_26034118_26034211 chr3R_26034148_26034211 chr3R_26034212_26034311;chr3R_26034018_26034117 99.99 99.99 99.99 99.99 99.98 99.99 99.99 99.96 99.99 100.00 100.00 99.98 100.00 99.98 99.99 100.00 99.97 99.95 100.00 99.99 99.99 99.99 100.00 100.00 99.96 99.96 100.00 99.97 99.97 99.98 100.00 99.97 99.99 100.00 100.00 99.98 100.00 100.00 99.99 99.99 99.97 99.97 99.99 99.97 99.99 99.97 99.99 99.99 100.00 100.00 99.98 100.00 100.00 99.99 99.98 99.99 99.99 99.99 K intron_retention aPKC,I_chr2R_10833552_10833654,RI_chr2R_10849347_10850391 chr2R - chr2R_10834109_10834208 chr2R_10834108_10834109;chr2R_10834208_10834209 chr2R_10833982_10834108;chr2R_10834209_10834324 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 2.63 3.37 0.00 2.27 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Top3beta chrX - chrX_6178924_6179006 chrX_6178923_6178924;chrX_6179006_6179007 chrX_6178455_6178923;chrX_6179007_6179400 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 2.33 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 2.94 3.03 0.00 3.57 0.00 0.00 1.92 0.00 0.00 1.67 0.00 0.00 0.00 0.00 3.03 2.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 K intron_retention CG10337 chr2L - chr2L_19546137_19546202 chr2L_19546136_19546137;chr2L_19546202_19546203 chr2L_19545376_19546136;chr2L_19546203_19546403 4.17 0.00 0.00 4.17 0.00 0.00 6.45 1.61 9.84 NA 4.35 4.17 7.41 0.00 6.90 0.00 0.00 10.00 0.00 6.06 NA 0.00 0.00 0.00 9.52 0.00 8.33 8.33 12.50 NA 8.70 6.25 10.53 2.63 23.53 NA 0.00 0.00 4.76 4.00 8.33 6.06 4.76 0.00 6.67 12.50 4.55 NA 4.44 0.00 3.12 0.00 NA 0.00 0.00 0.00 NA NA N cassette Rip11,E_chrX_18532733_18533695,RI_chrX_18530353_18530870,RI_chrX_18530742_18530870,RI_chrX_18544139_18544185 chrX - chrX_18530353_18531445;chrX_18530353_18531363 chrX_18530353_18530646;chrX_18530907_18531445,chrX_18530907_18531363 chrX_18530647_18530906 chrX_18530253_18530352;chrX_18531446_18531606 79.29 73.06 90.84 91.07 59.70 58.16 70.38 80.80 79.29 83.52 75.83 91.90 90.57 84.50 80.95 95.16 71.14 82.50 78.39 85.60 80.46 86.25 80.30 73.71 69.84 84.30 77.68 77.34 78.67 88.74 86.19 89.48 87.99 79.94 74.87 76.20 78.78 75.82 70.02 87.46 85.89 77.49 81.96 76.72 72.44 83.22 75.91 89.58 78.46 79.23 74.85 79.40 77.03 73.93 82.17 72.94 77.84 89.97 K jcn_only_AA casp,EI_chr2R_11914764_11914841 chr2R - chr2R_11914769_11914841;chr2R_11914764_11914841 chr2R_11914784_11914841 chr2R_11914842_11914941;chr2R_11914664_11914763 79.66 85.25 73.86 76.47 88.71 87.50 71.57 75.96 82.64 75.86 66.67 79.82 82.76 86.49 85.53 82.98 75.00 84.21 85.00 82.50 87.04 85.14 72.12 77.94 77.78 79.41 83.95 93.33 67.12 74.70 79.31 76.36 87.80 78.41 79.66 77.42 77.63 74.32 82.09 81.33 72.83 83.45 80.85 76.04 91.53 84.69 82.54 71.09 77.12 87.88 79.31 76.36 79.41 76.74 82.95 79.31 80.95 83.19 N jcn_only_AA pan chr4 + chr4_106560_107642 chr4_106560_106634 chr4_106479_106559;chr4_107643_107792 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 K intron_retention Xrp1,I_chr3R_14741648_14750799,I_chr3R_14750298_14750799 chr3R + chr3R_14747042_14750799 chr3R_14747041_14747042;chr3R_14750799_14750800 chr3R_14746135_14747041;chr3R_14750800_14750899 1.36 0.62 2.39 2.69 0.95 1.83 4.12 2.30 2.10 0.37 4.41 1.44 3.47 2.31 1.15 1.69 1.19 1.42 1.95 2.73 2.47 1.29 1.27 1.07 0.70 1.40 2.11 3.05 0.84 2.42 0.25 0.00 0.60 1.62 1.90 1.79 0.83 1.13 0.72 1.41 1.21 1.96 1.03 1.36 0.66 1.37 0.75 2.28 1.95 0.65 1.73 1.14 0.00 0.57 1.32 0.47 0.47 0.53 K jcn_only_AD aralar1,CG15535,I_chr3R_26249362_26249414 chr3R - chr3R_26249362_26249431 chr3R_26249362_26249414 chr3R_26249262_26249361;chr3R_26249432_26249514 0.00 0.00 8.00 2.13 NA 0.00 0.00 0.00 2.00 NA 0.00 0.00 0.00 0.00 4.55 2.38 NA NA 0.00 0.00 3.45 NA 0.00 0.00 NA 0.00 NA NA NA NA 2.70 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 4.00 NA 0.00 0.00 NA 4.76 0.00 0.00 0.00 0.00 NA 0.00 3.57 5.00 NA 0.00 0.00 0.00 2.63 K alternative_donor I_chr3R_23749027_23749091,CG5508,E_chr3R_23755071_23758533 chr3R + chr3R_23751064_23751390;chr3R_23751068_23751390 chr3R_23751130_23751390 chr3R_23751391_23751715;chr3R_23750915_23751063 56.25 42.86 50.00 55.56 57.14 55.56 NA 60.00 56.25 33.33 NA 58.82 50.00 46.67 44.44 NA NA 57.14 62.50 73.33 NA 58.33 NA 57.14 NA 50.00 NA NA NA NA 58.33 NA 40.00 61.11 57.14 NA 80.00 NA NA 55.56 NA 60.00 NA NA NA 45.45 50.00 NA 68.75 NA NA NA NA 50.00 50.00 NA 58.33 NA K alternative_donor Abi,RI_chr3R_9946195_9946332 chr3R - chr3R_9947835_9948084 chr3R_9947835_9947999 chr3R_9947468_9947834;chr3R_9948085_9948101 98.91 98.00 98.36 100.00 100.00 100.00 100.00 98.94 99.21 100.00 100.00 97.96 100.00 100.00 94.37 98.90 98.08 97.92 98.21 99.31 100.00 100.00 98.84 98.53 100.00 96.08 100.00 96.43 95.65 100.00 98.44 100.00 99.18 98.91 97.96 100.00 98.73 98.33 96.83 99.15 100.00 98.13 97.73 100.00 98.92 100.00 94.34 99.32 99.01 94.87 98.65 93.62 98.04 100.00 98.31 97.78 98.59 99.38 K alternative_donor CG33298 chr2L + chr2L_9495712_9503592;chr2L_9495657_9503592 chr2L_9496256_9503592 chr2L_9503593_9504813;chr2L_9495488_9495656 89.28 87.50 81.82 95.24 75.00 80.00 95.65 92.31 90.00 NA 83.33 100.00 75.00 92.86 90.00 89.66 91.67 100.00 88.89 93.75 63.64 70.00 85.71 100.00 100.00 100.00 100.00 100.00 75.00 80.00 100.00 NA 83.33 78.57 100.00 100.00 60.00 66.67 50.00 70.00 75.00 84.62 90.91 100.00 NA 75.00 NA 83.33 91.67 100.00 85.71 80.00 NA NA 84.62 NA 100.00 100.00 K intron_retention Trf4-1,I_chrX_8459198_8459266 chrX + chrX_8457581_8457692 chrX_8457580_8457581;chrX_8457692_8457693 chrX_8457186_8457580;chrX_8457693_8458408 78.95 74.47 80.00 82.35 72.73 58.54 75.00 86.15 80.18 76.19 73.17 65.00 72.73 82.93 79.59 81.63 75.76 80.95 81.58 81.82 77.78 74.63 86.84 75.47 86.67 77.78 92.00 82.61 68.89 76.19 87.88 82.76 80.00 76.67 78.95 69.44 85.71 70.83 79.63 73.33 89.29 72.92 90.91 75.44 65.62 72.73 75.00 83.33 79.73 90.91 77.05 93.10 78.12 72.73 84.78 75.00 89.66 92.45 K intron_retention Tcp-1zeta,CG8239 chrX + chrX_15640941_15641340 chrX_15640940_15640941;chrX_15641340_15641341 chrX_15640687_15640940;chrX_15641341_15643119 0.00 0.00 0.00 0.22 0.29 0.00 0.00 0.20 0.27 0.00 0.00 0.16 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.26 0.00 0.00 0.26 0.62 0.29 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.40 0.00 0.00 0.33 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.50 K jcn_only_AA sd,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15717261_15717340 chrX_15717261_15717325 chrX_15717220_15717260;chrX_15717341_15717515 42.42 25.00 33.33 41.67 31.03 42.42 42.11 46.97 43.04 NA 54.05 36.84 31.03 37.14 41.03 46.81 38.89 50.00 32.56 35.71 48.15 66.67 46.15 33.33 66.67 46.88 57.14 29.17 NA 65.22 38.00 NA 69.57 32.35 62.07 47.06 NA NA 34.38 62.07 60.00 48.53 34.15 32.00 55.00 31.82 40.00 53.66 46.48 40.91 25.64 NA NA NA 45.83 NA NA 55.17 K jcn_only_AA brm,I_chr3L_15968197_15968325 chr3L - chr3L_15975664_15975902 chr3L_15975669_15975902 chr3L_15975903_15975928;chr3L_15975368_15975663 92.81 93.33 100.00 94.03 95.12 87.88 92.86 98.11 92.71 100.00 86.05 94.59 95.45 89.19 95.12 90.57 84.09 89.19 94.34 99.01 95.00 94.74 94.44 90.16 97.37 90.48 88.00 97.14 NA 92.31 98.04 NA 91.55 92.77 84.38 100.00 92.31 94.74 95.45 90.00 93.55 92.93 91.30 100.00 85.29 96.43 84.85 89.58 91.89 91.43 90.48 92.11 95.24 NA 94.44 88.46 92.00 86.67 K alternative_donor CG5484 chr3R + chr3R_22543749_22544049;chr3R_22543734_22544049 chr3R_22543722_22544049 chr3R_22544050_22544588;chr3R_22543570_22543721 94.83 96.70 92.31 95.96 97.01 94.92 96.91 98.26 97.45 97.92 98.90 90.99 97.18 92.45 96.59 87.01 97.10 100.00 96.88 96.48 98.28 82.09 92.52 95.56 92.98 91.53 87.93 92.31 90.48 96.61 84.29 97.30 91.11 97.00 93.62 94.74 95.97 95.45 93.42 89.77 89.29 94.85 93.44 93.02 89.66 92.59 94.05 94.83 92.98 92.75 88.76 95.71 94.12 95.56 92.54 95.65 98.86 98.25 K jcn_only_AA CG3651,I_chr2L_22124217_22124661,I_chr2L_22124698_22124781 chr2L + chr2L_22124217_22124786;chr2L_22124217_22124661 chr2L_22124217_22124781 chr2L_22124117_22124216;chr2L_22124787_22124881 96.76 98.21 98.04 95.60 95.62 94.40 94.20 97.62 98.25 95.58 96.61 95.49 95.24 96.45 96.95 96.14 95.38 96.81 96.20 97.22 97.27 98.00 95.79 98.67 95.35 96.84 96.57 97.46 96.36 95.52 97.73 98.51 97.67 95.71 95.16 97.46 96.88 96.79 96.92 95.34 97.13 96.31 94.95 96.69 97.78 97.70 96.51 98.12 96.71 95.48 94.74 98.62 95.18 98.11 97.45 96.76 99.41 97.05 K intron_retention CG17184 chr3R - chr3R_7059047_7059123 chr3R_7059046_7059047;chr3R_7059123_7059124 chr3R_7058939_7059046;chr3R_7059124_7059292 1.04 0.00 1.77 3.03 0.00 0.00 0.58 1.08 1.21 3.45 0.00 1.35 0.00 1.52 0.00 1.61 2.35 1.90 2.17 1.04 2.27 1.45 0.00 2.08 6.52 3.95 2.22 0.00 8.70 0.00 3.36 0.00 0.00 0.00 0.00 0.00 0.81 0.00 2.56 1.33 0.00 0.49 2.30 0.00 0.00 1.16 0.00 0.00 2.55 0.00 1.98 0.00 0.00 1.49 3.70 1.03 2.52 0.00 K intron_retention RI_chr2R_17599884_17602910,HmgD,RI_chr2R_17600940_17602910,I_chr2R_17600947_17602910,I_chr2R_17601672_17603325,I_chr2R_17602490_17602910 chr2R + chr2R_17601672_17602910 chr2R_17601671_17601672;chr2R_17602910_17602911 chr2R_17601645_17601671;chr2R_17602911_17603010 3.30 15.00 1.96 2.22 0.00 0.00 9.09 2.38 8.64 NA 0.00 10.42 3.23 11.11 3.17 2.27 4.76 0.00 2.38 1.83 0.00 NA NA NA NA 5.88 NA NA NA NA 4.88 4.76 4.55 3.30 NA NA NA NA NA 25.93 NA 6.96 0.00 NA 0.00 NA NA 17.65 4.55 NA NA NA 11.76 NA 2.00 NA NA 4.00 K intron_retention glo,I_chr3R_7643675_7643727,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7642480_7643727 chr3R_7642479_7642480;chr3R_7643727_7643728 chr3R_7642334_7642479;chr3R_7643728_7643827 30.77 41.18 NA 40.00 NA NA 38.89 57.14 50.00 15.38 NA 34.62 46.15 53.33 33.33 56.25 66.67 NA 46.15 48.00 NA NA 22.58 29.63 13.64 NA 24.24 NA 22.73 22.22 3.45 30.77 36.84 44.44 31.58 56.25 16.67 NA 16.67 27.78 NA 45.83 53.33 21.05 26.32 33.33 25.00 30.77 23.53 28.57 20.00 25.00 17.65 20.00 NA 19.05 22.73 30.77 K jcn_only_AA E(z),RI_chr3L_10629194_10629525,RI_chr3L_10629541_10629723 chr3L - chr3L_10629194_10629723 chr3L_10629541_10629723 chr3L_10629724_10629823;chr3L_10629096_10629193 0.00 1.79 0.00 0.00 2.22 1.39 1.33 1.19 1.60 0.00 0.00 0.00 1.47 1.89 0.00 0.00 2.13 0.00 0.00 1.86 0.00 0.00 0.63 0.83 6.25 1.82 0.00 0.00 1.61 4.29 5.77 0.00 0.00 0.00 3.12 8.70 0.95 2.50 0.00 0.00 1.69 0.00 1.79 0.00 0.00 0.00 0.88 0.00 0.00 0.87 1.42 0.00 0.00 0.00 0.00 0.00 0.82 0.00 K jcn_only_AA iPLA2-VIA chr3L - chr3L_9857200_9857292;chr3L_9857015_9857292 chr3L_9856717_9857292 chr3L_9857293_9857459 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 97.83 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 100.00 98.44 98.32 99.11 100.00 100.00 100.00 96.36 100.00 95.83 100.00 98.77 100.00 100.00 99.12 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 96.15 100.00 100.00 97.62 100.00 100.00 100.00 98.48 97.50 100.00 100.00 100.00 100.00 100.00 K intron_retention Dsp1,I_chrX_16228447_16229355,I_chrX_16231287_16231413 chrX + chrX_16228447_16230299 chrX_16228446_16228447;chrX_16230299_16230300 chrX_16228347_16228446;chrX_16230300_16230776 19.52 NA 25.00 15.38 NA 7.14 35.00 19.05 13.51 14.29 NA 6.90 NA 20.00 25.00 13.79 15.38 14.29 NA 21.88 NA 16.67 22.22 21.43 NA NA 24.00 25.00 NA NA NA NA NA 25.00 NA NA NA NA 14.29 15.38 NA 29.17 25.00 33.33 NA NA NA NA 18.52 NA NA NA NA NA 25.00 NA 16.67 NA K intron_retention Vap-33-1 chrX + chrX_3846075_3846140 chrX_3846074_3846075;chrX_3846140_3846141 chrX_3846036_3846074;chrX_3846141_3846254 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31955,RI_chr2L_3712446_3712767 chr2L - chr2L_3712446_3712767 chr2L_3712445_3712446;chr2L_3712767_3712768 chr2L_3712346_3712445;chr2L_3712768_3712862 76.47 57.89 73.68 83.33 80.00 76.47 86.27 79.27 80.18 70.00 85.71 79.31 75.00 77.50 79.55 88.52 82.35 78.57 83.67 68.48 76.00 95.45 62.50 65.75 63.33 81.82 87.18 94.74 76.19 72.97 70.27 77.50 83.87 89.55 75.68 81.25 61.54 32.26 56.14 80.28 78.26 82.05 79.55 51.11 65.91 76.47 68.12 73.33 82.05 59.76 73.02 67.31 60.32 58.62 79.55 47.30 60.49 79.71 K jcn_only_AA CG34349,I_chr3R_20889373_20889414 chr3R + chr3R_20883627_20885930 chr3R_20883627_20885077 chr3R_20883558_20883626 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA 0.00 3.33 NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD Eno,EI_chr2L_1727403_1727645,I_chr2L_1728229_1728302 chr2L - chr2L_1728233_1728361 chr2L_1728233_1728302 chr2L_1728054_1728232;chr2L_1728362_1728402 95.24 91.30 95.24 72.73 NA NA 80.95 89.29 90.00 NA NA 98.36 NA NA NA 88.10 NA NA 100.00 89.29 NA NA 92.59 89.66 NA NA NA NA NA 100.00 94.74 NA 95.65 97.50 NA NA NA NA NA 89.66 NA 96.67 NA 86.96 95.24 100.00 86.21 95.65 95.35 NA 100.00 NA NA 95.24 95.45 NA NA 100.00 K alternative_acceptor Adam,I_chr2R_5856741_5856974,I_chr2R_5856741_5857245,I_chr2R_5857058_5857250,I_chr2R_5857078_5857245 chr2R + chr2R_5857058_5857250 chr2R_5857058_5857245 chr2R_5856978_5857057;chr2R_5857251_5857345 100.00 98.94 100.00 99.23 100.00 100.00 100.00 100.00 99.47 98.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.27 98.55 100.00 99.10 100.00 99.23 100.00 100.00 100.00 100.00 99.14 100.00 98.65 99.42 100.00 100.00 99.55 99.04 100.00 98.57 99.22 100.00 99.36 99.16 100.00 100.00 99.23 98.17 100.00 100.00 100.00 100.00 100.00 99.32 100.00 K intron_retention Vago chrX + chrX_10983693_10983758 chrX_10983692_10983693;chrX_10983758_10983759 chrX_10983559_10983692;chrX_10983759_10984138 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA 1.96 0.00 K jcn_only_AA Psi,RI_chr2R_12752536_12752596,I_chr2R_12753387_12753659 chr2R - chr2R_12752536_12752596;chr2R_12752539_12752596 chr2R_12752542_12752596 chr2R_12752597_12752696;chr2R_12752436_12752535 33.33 45.71 43.59 40.98 54.84 25.71 26.47 42.86 26.15 40.00 46.15 34.67 18.18 26.92 26.19 39.39 41.03 41.67 33.33 28.07 38.89 40.74 42.50 33.33 NA 29.27 37.50 35.00 23.26 27.14 41.67 40.74 28.26 38.98 NA 30.95 32.79 30.77 45.71 31.85 32.35 34.48 24.14 30.00 26.09 38.30 32.35 38.04 37.88 37.50 29.03 NA 20.45 33.33 28.85 28.12 26.67 34.55 N alternative_acceptor I_chrX_16309561_16309689,hang,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16323441_16323563;chrX_16323441_16324653 chrX_16323441_16323548 chrX_16323093_16323440;chrX_16324654_16324797 9.30 9.86 5.26 8.57 6.56 7.69 8.18 3.94 9.32 11.54 6.12 8.33 7.69 6.45 10.39 9.80 6.00 5.63 6.49 9.34 4.35 24.09 8.07 10.99 9.46 6.25 7.34 9.86 15.85 10.10 5.97 10.53 14.75 6.34 10.91 13.41 11.94 10.53 10.14 10.53 6.38 7.89 6.45 12.50 13.51 8.00 8.89 14.29 6.98 9.30 7.20 10.42 8.70 10.00 7.41 9.68 10.00 16.13 K intron_retention trio,I_chr3L_999683_1009321 chr3L - chr3L_1003822_1007216 chr3L_1003821_1003822;chr3L_1007216_1007217 chr3L_1003728_1003821;chr3L_1007217_1007645 1.02 0.80 3.54 2.03 0.00 0.00 1.75 0.00 1.67 1.02 0.00 1.83 0.00 0.00 0.72 1.39 0.00 0.00 1.02 1.33 4.05 2.04 3.68 0.00 5.88 0.00 4.14 4.55 2.21 0.00 5.21 0.00 1.23 1.09 0.72 1.45 1.59 0.00 0.85 1.00 1.12 1.83 2.38 0.58 0.00 0.62 0.97 0.70 0.91 2.56 1.59 3.09 1.98 0.00 1.61 0.00 2.14 0.67 K intron_retention I_chr2R_16518342_16520460,I_chr2R_16518620_16518916,RI_chr2R_16520388_16520855,rig chr2R - chr2R_16522194_16522251 chr2R_16522193_16522194;chr2R_16522251_16522252 chr2R_16521936_16522193;chr2R_16522252_16522402 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 2.56 0.00 4.26 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention sqd,I_chr3R_9462248_9471474,I_chr3R_9468150_9468236,I_chr3R_9470417_9471474 chr3R - chr3R_9468150_9468233 chr3R_9468149_9468150;chr3R_9468233_9468234 chr3R_9468050_9468149;chr3R_9468234_9468301 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.23 1.05 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.21 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA Droj2,RI_chr3R_9207981_9208471,RI_chr3R_9208529_9209185 chr3R + chr3R_9207981_9209185;chr3R_9207981_9208471 chr3R_9207981_9209956 chr3R_9207926_9207980;chr3R_9209957_9210301 1.67 0.00 0.00 18.57 0.00 0.00 2.47 6.48 2.04 0.00 0.00 3.03 3.09 3.02 0.00 1.03 0.00 0.00 2.18 0.00 0.00 2.09 1.67 0.00 5.45 8.57 4.28 3.71 1.82 1.58 0.00 2.68 0.00 2.76 0.00 1.32 2.70 2.40 2.52 1.48 3.13 1.77 0.00 3.39 3.26 1.95 0.00 1.26 2.14 0.00 1.59 0.00 1.16 0.00 2.04 1.85 2.69 1.01 K alternative_donor CG3632,RI_chrX_16195880_16196242 chrX + chrX_16190941_16191682;chrX_16190917_16191682 chrX_16190824_16191682 chrX_16191683_16191751;chrX_16190763_16190823 12.50 12.50 9.09 23.08 20.00 25.00 5.26 9.09 8.70 NA 16.67 21.05 12.50 12.50 8.33 15.00 10.00 16.67 16.67 5.00 33.33 11.11 12.50 12.50 14.29 30.00 12.50 14.29 0.00 14.29 0.00 NA 20.00 10.53 14.29 16.67 57.14 12.50 0.00 14.29 NA 5.88 0.00 12.50 NA 0.00 0.00 11.11 15.00 16.67 9.09 25.00 20.00 NA 11.11 20.00 NA NA K alternative_donor ttk,I_chr3R_27554202_27554334,I_chr3R_27554601_27555353 chr3R + chr3R_27550933_27552853 chr3R_27551054_27552853 chr3R_27552854_27553156;chr3R_27550864_27550932 100.00 100.00 100.00 100.00 100.00 90.91 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 94.74 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 K intron_retention Cdc37,CG12020 chr3L + chr3L_1795733_1795792 chr3L_1795732_1795733;chr3L_1795792_1795793 chr3L_1795600_1795732;chr3L_1795793_1795996 0.00 0.00 0.00 0.73 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.89 1.69 2.24 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.47 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 K jcn_only_AA CG18604,I_chr2R_14589693_14590032 chr2R + chr2R_14589693_14590032 chr2R_14589693_14590023 chr2R_14589593_14589692;chr2R_14590033_14590132 85.00 83.33 90.00 77.78 90.91 80.00 NA 86.11 79.03 85.00 NA 87.23 NA 77.27 85.71 92.86 84.62 90.91 NA 87.93 76.19 83.56 89.80 80.43 93.10 NA 85.00 69.70 92.31 81.58 NA NA 94.74 90.62 87.50 89.29 74.58 91.43 77.55 77.78 NA 92.45 NA 80.00 80.00 97.14 80.00 85.71 92.68 87.50 88.89 NA 81.08 77.27 77.42 84.62 79.31 NA K intron_retention CG3815 chrX + chrX_6192265_6192335 chrX_6192264_6192265;chrX_6192335_6192336 chrX_6190742_6192264;chrX_6192336_6193020 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 4.76 7.69 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Pgi,I_chr2R_4800674_4800937,I_chr2R_4800693_4800761 chr2R - chr2R_4800693_4800937 chr2R_4800693_4800761 chr2R_4800593_4800692;chr2R_4800938_4801037 1.71 3.88 0.97 0.60 1.12 3.41 1.23 0.71 1.71 4.40 0.00 2.02 1.22 0.00 0.00 0.00 1.41 0.00 0.00 1.38 1.01 4.85 3.10 6.09 3.08 0.00 1.83 5.05 5.61 2.30 1.59 0.00 5.76 0.61 1.41 3.16 2.75 0.89 5.37 2.15 0.00 0.47 0.00 3.23 1.72 1.90 2.44 2.36 1.35 2.42 1.91 0.00 1.67 3.37 1.96 0.00 2.70 2.17 K jcn_only_AA Psn,RI_chr3L_20430213_20430358 chr3L + chr3L_20425808_20425896 chr3L_20425808_20425866 chr3L_20425774_20425807;chr3L_20425897_20426106 95.95 97.44 85.54 88.10 93.40 88.46 96.72 95.65 96.11 91.94 96.00 92.42 92.75 96.20 94.02 97.56 92.86 92.31 97.10 96.35 90.00 98.44 91.92 96.74 94.92 91.01 92.93 93.88 98.88 94.29 98.46 91.38 96.43 96.03 97.56 93.18 96.55 95.95 96.46 97.94 100.00 94.15 88.46 100.00 96.55 96.05 91.30 100.00 97.60 93.20 93.65 98.33 97.83 90.62 91.95 93.24 96.59 98.39 K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27761114_27762991,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27707594_27801169 chr3R_27707594_27784756;chr3R_27784850_27795477;chr3R_27795508_27801169 chr3R_27784757_27784849;chr3R_27795478_27795507 chr3R_27707494_27707593;chr3R_27801170_27801219 80.00 NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8088454_8089184;chr2L_8088454_8088609;chr2L_8088454_8089356;chr2L_8088454_8089490;chr2L_8088454_8088664 chr2L_8088454_8089057 chr2L_8088448_8088453 0.00 NA 4.35 0.00 NA NA 0.00 1.79 0.00 NA NA 0.00 4.76 0.00 0.00 2.70 NA 0.00 0.00 1.03 0.00 NA 0.00 0.00 0.00 3.70 NA NA NA NA 2.78 NA 0.00 1.32 0.00 0.00 NA NA NA 0.00 0.00 0.00 3.23 0.00 NA 0.00 NA NA 1.03 NA 0.00 NA 0.00 NA 0.00 0.00 NA NA K alternative_acceptor moody chrX - chrX_1939981_1940048 chrX_1939983_1940048 chrX_1940049_1940544;chrX_1938363_1939980 30.77 28.57 46.15 47.62 25.00 35.71 22.22 31.82 37.84 26.67 11.76 33.33 NA 50.00 41.18 38.46 20.00 29.41 36.36 36.84 30.77 34.78 22.73 25.49 22.73 30.77 33.33 43.75 35.00 26.47 30.77 26.32 23.08 37.04 23.08 33.33 33.77 29.79 32.65 32.43 36.36 34.21 23.08 25.64 34.62 20.45 21.62 32.14 24.39 30.56 30.95 42.31 30.77 21.88 20.00 41.38 27.78 NA K alternative_acceptor Fps85D,I_chr3R_5194729_5194776,I_chr3R_5216796_5218450 chr3R - chr3R_5198991_5199052 chr3R_5199003_5199052 chr3R_5199053_5199389;chr3R_5198712_5198990 2.27 3.51 2.04 1.59 0.00 2.22 1.47 1.54 2.40 2.27 4.88 3.12 3.57 1.96 3.12 2.63 2.27 1.92 2.38 2.73 2.00 0.95 1.23 1.43 2.78 2.38 1.59 0.00 3.39 1.67 4.76 0.00 0.00 1.52 2.33 2.22 2.88 5.00 3.51 1.06 2.13 3.85 3.45 1.00 4.65 5.17 4.44 2.70 2.38 3.92 1.15 1.82 4.17 0.00 3.28 0.00 2.50 0.00 K intron_retention Rme-8 chr2R - chr2R_5056301_5056360 chr2R_5056300_5056301;chr2R_5056360_5056361 chr2R_5056178_5056300;chr2R_5056361_5056736 0.00 0.00 2.94 2.75 2.86 0.00 2.88 1.87 1.80 0.00 0.00 0.00 1.49 0.00 0.00 2.50 1.45 2.86 1.49 1.23 0.00 3.90 0.00 0.00 10.87 0.00 2.90 0.00 3.23 0.00 3.61 0.00 0.00 0.88 0.00 3.85 1.20 0.00 0.00 0.00 9.09 0.00 0.00 2.22 3.12 3.39 0.00 0.00 1.50 0.00 0.00 0.00 0.00 0.00 1.41 2.74 0.00 0.00 K jcn_only_AA I_chr3L_18664773_18665233,GNBP2,I_chr3L_18667579_18667644 chr3L - chr3L_18667579_18667644 chr3L_18667583_18667644 chr3L_18667645_18667712;chr3L_18667514_18667578 98.46 97.46 97.32 98.12 100.00 98.02 99.24 99.38 98.88 91.49 100.00 99.05 100.00 97.26 100.00 97.25 98.55 98.59 98.89 100.00 100.00 98.31 97.28 98.46 97.73 97.26 98.80 100.00 97.26 98.82 92.41 98.61 97.80 99.18 95.65 97.67 98.12 96.06 98.91 95.41 93.10 98.46 98.36 99.19 100.00 98.33 96.58 95.92 98.82 100.00 96.95 96.88 100.00 98.90 96.94 100.00 96.83 98.72 K intron_retention Pld,I_chr2R_2130639_2136916,RI_chr2R_2138358_2141112 chr2R + chr2R_2129606_2130035 chr2R_2129605_2129606;chr2R_2130035_2130036 chr2R_2129572_2129605;chr2R_2130036_2130224 100.00 NA 100.00 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 100.00 NA NA 87.50 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD I_chrX_4000307_4003527,CG4857 chrX + chrX_4014458_4014534 chrX_4014474_4014534 chrX_4014535_4014601;chrX_4014329_4014457 2.95 0.00 1.92 0.79 6.52 3.64 7.89 0.78 5.41 NA 0.00 0.76 6.45 0.00 2.78 1.15 0.00 4.55 4.00 6.48 0.00 4.05 3.30 3.28 8.57 2.82 1.75 8.00 4.65 1.67 3.92 4.35 0.00 5.60 2.22 3.08 0.00 0.00 0.00 3.96 3.33 1.69 1.43 1.82 0.00 6.45 4.00 1.92 4.29 10.71 1.54 5.66 NA 0.00 0.00 5.41 NA 3.57 K cassette CG2698,I_chr3R_3828169_3828254,I_chr3R_3828169_3828941,I_chr3R_3828880_3828941,I_chr3R_3829483_3829715,I_chr3R_3830586_3830981 chr3R + chr3R_3828169_3828941 chr3R_3828169_3828275;chr3R_3828882_3828941 chr3R_3828276_3828881 chr3R_3828069_3828168;chr3R_3828942_3829007 100.00 100.00 100.00 98.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 100.00 100.00 100.00 98.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention eco chr3L - chr3L_7328976_7329037 chr3L_7328975_7328976;chr3L_7329037_7329038 chr3L_7328534_7328975;chr3L_7329038_7332092 0.00 0.00 2.08 0.00 0.00 0.00 2.22 0.00 2.38 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 3.19 1.15 0.00 0.00 5.17 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 1.79 1.49 0.00 0.00 N intron_retention Adgf-A,Msi,F_chr3L_17749926_17757161 chr3L - chr3L_17756677_17757161 chr3L_17756676_17756677;chr3L_17757161_17757162 chr3L_17755701_17756676;chr3L_17757162_17757241 9.09 NA NA 21.05 NA NA 38.46 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 9.09 0.00 NA NA NA 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA NA K alternative_acceptor I_chr3R_22696095_22697413,Rb97D chr3R - chr3R_22699278_22699581 chr3R_22699401_22699581 chr3R_22699582_22699720;chr3R_22698253_22699277 62.96 60.00 57.14 81.25 57.14 62.96 73.21 74.07 61.18 55.32 66.67 66.67 69.70 75.00 62.96 76.47 74.07 73.91 66.67 64.06 47.62 25.00 62.75 63.16 63.33 64.00 62.79 73.68 56.00 54.29 68.97 60.87 35.48 67.86 63.33 60.00 43.75 46.34 45.10 60.00 70.59 61.11 62.07 58.33 40.00 57.78 63.04 66.67 72.13 56.25 58.49 65.52 65.52 64.10 71.88 60.00 59.18 66.67 K jcn_only_AA CG31344,RI_chr3R_11050688_11050804,I_chr3R_11054902_11054955 chr3R - chr3R_11050657_11050804 chr3R_11050688_11050804 chr3R_11050805_11050904;chr3R_11050588_11050656 2.04 2.78 0.00 2.00 3.33 5.41 0.00 2.27 1.32 0.00 0.00 0.00 0.00 0.00 0.00 6.67 4.17 0.00 0.00 1.64 0.00 13.04 2.08 8.51 15.00 NA 0.00 NA 0.00 0.00 6.56 NA NA 2.44 NA NA 12.00 0.00 11.36 3.57 NA 0.00 0.00 15.00 NA 9.09 5.13 NA 1.23 9.09 0.00 4.00 NA 4.76 5.26 3.70 0.00 NA K cassette Stim chrX - chrX_15830468_15831623 chrX_15830468_15830831;chrX_15831065_15831623 chrX_15830832_15831064 chrX_15830352_15830467;chrX_15831624_15831787 99.28 100.00 99.22 99.08 100.00 99.14 97.96 99.53 99.60 100.00 97.73 99.56 98.04 100.00 99.29 99.45 99.07 100.00 99.24 98.62 98.41 99.36 98.64 99.28 98.91 99.32 99.26 100.00 98.51 99.17 96.53 100.00 98.10 98.00 100.00 97.64 99.18 99.12 99.31 99.49 97.74 99.60 99.03 100.00 99.32 99.45 99.13 99.40 99.24 99.05 99.28 100.00 100.00 98.73 100.00 99.15 99.40 99.67 K jcn_only_AD HSPC300,I_chr2R_19915648_19915744,I_chr2R_19915648_19915903,I_chr2R_19915648_19916060 chr2R - chr2R_19915648_19916136;chr2R_19915648_19915903 chr2R_19915648_19915744 chr2R_19915548_19915647;chr2R_19916137_19916160 0.60 0.89 0.00 0.00 0.00 1.15 0.00 0.35 0.61 1.98 3.33 0.72 0.75 1.39 0.53 0.00 0.00 1.37 0.00 0.84 2.13 0.00 0.00 2.08 1.85 0.53 1.33 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.86 0.00 4.00 2.04 1.22 0.60 0.00 0.96 0.86 0.00 0.71 0.24 0.68 0.00 1.03 2.86 1.60 0.00 0.53 1.36 0.45 0.70 0.50 0.38 K alternative_acceptor Tif-IA,RI_chr2L_22250854_22257652 chr2L + chr2L_22253333_22253424;chr2L_22253333_22253421 chr2L_22253333_22253386 chr2L_22253256_22253332;chr2L_22253425_22253685 39.06 43.04 40.00 44.79 45.71 39.34 31.30 37.50 37.31 40.91 37.14 37.23 38.57 38.46 38.27 40.61 43.08 38.64 42.27 38.32 38.64 37.50 38.71 41.76 41.30 43.94 38.62 42.86 42.31 41.30 33.90 37.84 46.34 36.48 39.13 40.74 38.89 39.06 38.57 39.09 45.61 38.17 38.16 38.03 39.29 37.21 41.30 39.62 38.93 38.03 41.23 37.70 45.45 38.64 41.38 40.58 38.46 49.25 K alternative_donor wdb,I_chr3R_23394314_23406731,I_chr3R_23394314_23406794,I_chr3R_23394314_23407159,RI_chr3R_23394314_23407186,I_chr3R_23394314_23407412,I_chr3R_23394314_23407715,I_chr3R_23394314_23407721,RI_chr3R_23406048_23406731,RI_chr3R_23406048_23406794,I_chr3R_23406048_23406928,RI_chr3R_23406048_23407402 chr3R - chr3R_23406048_23406928;chr3R_23406048_23406865;chr3R_23406048_23407723 chr3R_23406048_23407402 chr3R_23405948_23406047;chr3R_23407724_23407815 15.38 11.11 10.34 8.11 7.69 25.00 16.67 13.51 16.28 25.00 42.31 6.67 37.50 12.50 13.79 8.00 9.52 52.38 18.75 20.00 26.92 4.94 9.52 29.03 11.11 26.32 11.76 25.00 37.21 19.23 17.39 15.79 23.08 20.59 11.11 23.08 7.14 12.50 20.00 8.33 23.08 11.11 23.53 5.00 18.18 13.04 6.25 33.33 6.98 21.74 12.20 47.06 8.33 0.00 10.71 10.53 15.38 25.00 K alternative_acceptor CG17233,I_chr3L_20232803_20232962,RI_chr3L_20232898_20232962 chr3L - chr3L_20232648_20232962;chr3L_20232714_20232962;chr3L_20232711_20232962 chr3L_20232645_20232962 chr3L_20232963_20233016;chr3L_20232147_20232644 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 7.14 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 4.00 3.33 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 5.00 5.26 0.00 0.00 K intron_retention CG15094 chr2R - chr2R_14683912_14683981 chr2R_14683911_14683912;chr2R_14683981_14683982 chr2R_14683775_14683911;chr2R_14683982_14684238 4.81 4.72 3.30 8.59 4.44 3.21 6.82 3.51 5.06 11.11 6.19 3.45 3.42 4.58 4.57 1.97 1.25 3.77 2.82 2.68 3.08 8.11 7.38 4.58 15.15 10.26 4.85 9.80 10.38 6.52 8.20 4.49 5.10 3.72 4.20 17.44 11.02 6.62 3.36 6.67 5.71 4.81 2.97 3.70 3.12 4.94 3.48 11.48 3.61 5.65 4.83 6.67 3.30 6.49 4.82 5.34 0.72 1.79 K jcn_only_AA CG30122,I_chr2R_14526123_14526189 chr2R - chr2R_14521791_14523647 chr2R_14522447_14523647 chr2R_14523648_14523776 97.83 96.15 97.27 99.65 98.20 98.54 97.11 99.23 99.00 98.44 100.00 97.45 95.04 94.96 98.96 100.00 97.83 100.00 97.02 95.17 100.00 96.00 97.67 93.71 97.00 99.02 95.45 96.83 95.77 99.02 92.44 94.64 98.51 97.99 97.85 97.59 91.58 88.89 96.30 93.47 98.68 99.72 99.26 91.00 98.37 94.64 99.17 96.88 98.32 96.85 92.90 97.92 98.73 96.88 99.12 99.33 99.21 98.86 K intron_retention CG12024,REI_chr3L_1857404_1857509 chr3L + chr3L_1857404_1857509 chr3L_1857403_1857404;chr3L_1857509_1857510 chr3L_1857304_1857403;chr3L_1857510_1857609 28.18 25.00 25.00 25.00 28.57 NA NA 22.73 35.29 15.00 29.41 20.00 NA NA 35.29 NA NA NA NA 28.57 50.00 38.46 19.23 19.05 16.67 NA 24.14 33.33 50.00 21.74 NA NA 20.00 37.50 10.00 36.00 25.00 25.00 26.67 36.00 46.67 34.48 45.45 30.43 33.33 29.17 17.86 35.00 38.10 21.88 23.08 30.00 11.11 15.79 40.00 27.78 22.58 39.13 K alternative_donor Sans,RI_chr2R_8825985_8826072,I_chr2R_8826501_8826591 chr2R + chr2R_8824602_8825904;chr2R_8824493_8825904 chr2R_8824595_8825904 chr2R_8825905_8825980;chr2R_8824445_8824492 50.00 NA NA 57.14 NA NA NA NA 42.86 NA 100.00 40.00 NA NA NA NA NA NA 50.00 55.56 NA NA 40.00 60.00 NA NA NA NA NA NA 60.00 NA 62.50 50.00 60.00 50.00 50.00 50.00 NA NA NA 50.00 NA 40.00 40.00 44.44 50.00 33.33 44.44 NA 71.43 50.00 40.00 NA 60.00 28.57 33.33 46.15 K intron_retention CG7203,I_chr2L_7795654_7795717,Herp chr2L - chr2L_7797733_7798162 chr2L_7797732_7797733;chr2L_7798162_7798163 chr2L_7797397_7797732;chr2L_7798163_7798614 2.14 0.00 0.00 5.41 0.00 0.00 1.79 1.82 1.67 9.76 5.26 4.11 0.00 0.00 0.00 5.26 6.45 0.00 0.00 2.14 0.00 4.00 3.88 0.00 0.00 0.00 2.41 3.19 6.06 3.39 3.45 11.90 4.35 5.71 5.41 0.00 0.65 0.00 0.00 6.67 4.17 4.29 0.00 6.35 4.41 5.26 1.12 7.41 0.00 0.00 2.82 5.56 0.00 3.03 0.00 5.26 1.54 0.00 K intron_retention CG3757 chrX + chrX_250951_253649 chrX_250950_250951;chrX_253649_253650 chrX_250541_250950;chrX_253650_255278 0.00 NA NA 0.00 NA NA 0.00 0.00 17.65 NA NA 0.00 NA NA NA 0.00 NA NA NA 5.56 NA 0.00 2.00 0.00 0.00 NA 0.00 1.92 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA K intron_retention Ndc80,tth chrX - chrX_13505729_13505790 chrX_13505728_13505729;chrX_13505790_13505791 chrX_13505344_13505728;chrX_13505791_13505850 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Rap2l,I_chr2R_19951753_19952256,RI_chr2R_19952181_19952256 chr2R + chr2R_19951097_19952256;chr2R_19952181_19952256 chr2R_19951753_19952256 chr2R_19952257_19952356;chr2R_19950576_19951096 1.82 0.00 1.92 1.32 2.38 0.00 1.35 2.08 1.79 3.57 0.00 1.25 4.35 1.96 1.92 1.75 2.17 4.76 1.85 2.70 0.00 2.56 1.35 1.47 0.00 1.82 2.33 2.63 2.70 2.27 1.52 2.38 4.76 1.16 2.44 0.00 2.50 2.04 1.61 1.27 1.82 0.94 0.00 1.49 1.96 1.22 1.85 4.92 1.04 0.00 1.92 2.38 2.27 0.00 1.56 0.00 0.00 1.49 K intron_retention atms chr3R + chr3R_602527_602585 chr3R_602526_602527;chr3R_602585_602586 chr3R_601560_602526;chr3R_602586_603425 0.00 0.00 0.00 1.52 0.00 0.00 0.00 1.45 1.18 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 2.47 0.00 2.68 0.90 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 1.64 0.00 1.06 0.00 0.00 0.00 0.00 0.00 2.44 1.80 0.65 0.00 1.30 0.00 0.00 0.00 0.65 0.00 2.20 0.89 0.45 0.00 K intron_retention dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21309092_21309945 chr2L_21309091_21309092;chr2L_21309945_21309946 chr2L_21308992_21309091;chr2L_21309946_21309974 100.00 100.00 92.31 100.00 100.00 100.00 94.44 95.45 100.00 100.00 100.00 100.00 100.00 100.00 93.33 96.15 100.00 100.00 100.00 97.22 100.00 100.00 92.86 100.00 100.00 90.91 94.74 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 95.24 NA 100.00 100.00 100.00 93.55 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 K intron_retention l(1)G0196,I_chrX_21900456_21903880,RI_chrX_21900456_21904036,I_chrX_21900456_21904601,noncoding_25159 chrX + chrX_21903358_21903507 chrX_21903357_21903358;chrX_21903507_21903508 chrX_21903021_21903357;chrX_21903508_21904005 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 87.50 NA 95.45 NA 92.31 100.00 100.00 88.89 100.00 100.00 97.92 100.00 94.44 100.00 100.00 100.00 NA 91.67 100.00 NA 100.00 90.00 100.00 97.22 100.00 100.00 NA 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 95.24 K intron_retention CG12734,I_chr3L_3183812_3183932,I_chr3L_3184645_3185360 chr3L + chr3L_3184038_3184251 chr3L_3184037_3184038;chr3L_3184251_3184252 chr3L_3183933_3184037;chr3L_3184252_3184644 20.41 16.67 NA 42.86 NA NA NA 26.67 24.00 NA NA 31.25 NA NA 6.67 NA NA NA NA 15.79 NA 22.22 20.00 20.83 NA NA 20.83 25.00 NA NA NA NA 21.43 NA NA NA 19.23 4.55 11.76 56.25 NA 17.39 NA 4.76 NA 14.29 NA 30.77 42.86 30.00 17.39 NA NA 14.29 NA 11.76 NA NA K intron_retention CG5382,CG5380 chr3R - chr3R_18190943_18190997 chr3R_18190942_18190943;chr3R_18190997_18190998 chr3R_18190741_18190942;chr3R_18190998_18191191 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 K alternative_acceptor CG30428,RI_chr2R_21141343_21141399 chr2R + chr2R_21141285_21141342 chr2R_21141285_21141327 chr2R_21141243_21141284;chr2R_21141343_21141407 4.71 NA NA 3.85 NA NA 0.00 0.00 6.67 NA NA 12.50 NA NA NA NA 6.67 NA NA 10.53 NA NA 3.03 0.00 NA NA 6.67 NA NA NA NA NA 11.76 0.00 NA NA 7.69 6.25 NA 5.56 NA 3.45 NA 0.00 NA NA NA 6.67 3.85 NA NA NA NA NA 0.00 NA NA NA N intron_retention Cip4,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4327918_4338066 chr3L_4327917_4327918;chr3L_4338066_4338067 chr3L_4327773_4327917;chr3L_4338067_4338182 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG6891,RI_chrX_18670889_18674713,I_chrX_18673576_18674713,RI_chrX_18674227_18674713 chrX + chrX_18674227_18674713 chrX_18674226_18674227;chrX_18674713_18674714 chrX_18674127_18674226;chrX_18674714_18674813 100.00 NA NA 92.86 NA NA 100.00 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 93.75 100.00 NA NA NA 88.89 94.44 NA NA NA NA NA NA 90.00 NA NA NA 100.00 NA NA 100.00 NA 100.00 NA NA NA NA 100.00 100.00 NA NA NA NA NA NA 100.00 NA K alternative_donor R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083458_8089184;chr2L_8083588_8089184;chr2L_8083637_8089184;chr2L_8083687_8089184 chr2L_8083522_8089184 chr2L_8089185_8089284;chr2L_8083444_8083457 41.67 45.45 45.83 46.88 25.00 27.78 48.89 53.33 48.08 50.00 28.57 35.56 65.00 41.67 40.00 54.69 38.89 47.37 60.00 44.74 27.27 45.83 35.29 12.50 36.36 47.37 26.67 12.50 36.36 41.67 48.15 61.54 37.14 56.10 38.46 35.00 28.57 33.33 33.33 39.29 59.09 42.42 47.83 46.67 41.67 52.63 42.86 50.00 51.22 28.57 35.71 14.29 28.57 40.00 44.44 20.00 20.00 51.52 K intron_retention I_chr3L_20306985_20307177,CG6680 chr3L + chr3L_20310521_20310578 chr3L_20310520_20310521;chr3L_20310578_20310579 chr3L_20310328_20310520;chr3L_20310579_20310888 98.15 93.75 NA 93.75 NA 100.00 100.00 100.00 96.15 NA NA 100.00 NA 91.67 94.12 93.75 94.12 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 94.12 NA 100.00 NA NA NA 90.00 95.45 100.00 100.00 100.00 88.89 NA 86.67 NA 96.30 100.00 93.75 NA 93.33 NA 100.00 100.00 100.00 94.44 88.89 100.00 NA 100.00 90.00 94.12 93.33 K intron_retention CtBP chr3R + chr3R_8837471_8840829 chr3R_8837470_8837471;chr3R_8840829_8840830 chr3R_8837339_8837470;chr3R_8840830_8840914 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.36 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 96.67 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 K intron_retention CG30372,coilin,RI_chr2R_4012976_4013037 chr2R - chr2R_4014515_4014569 chr2R_4014514_4014515;chr2R_4014569_4014570 chr2R_4014429_4014514;chr2R_4014570_4014694 0.00 NA 0.00 3.03 NA 0.00 0.00 8.89 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 2.70 NA 0.00 NA NA NA 0.00 NA 0.00 NA K jcn_only_AA Itp-r83A,I_chr3R_1356147_1356224 chr3R + chr3R_1356147_1356271 chr3R_1356147_1356224 chr3R_1356136_1356146;chr3R_1356272_1356324 2.27 0.00 0.00 3.45 3.33 0.00 11.43 0.00 3.12 10.00 NA 3.28 0.00 7.41 6.90 2.27 0.00 3.85 0.00 1.69 5.00 0.00 1.69 1.92 0.00 NA 0.00 7.41 12.50 2.17 4.35 NA 4.17 4.44 3.85 0.00 2.38 2.33 1.41 6.85 NA 1.47 6.06 0.00 NA NA 0.00 0.00 3.64 4.55 0.00 4.76 NA NA 0.00 NA NA 0.00 K intron_retention CG16908,Rpt3R chr3R - chr3R_5580061_5580118 chr3R_5580060_5580061;chr3R_5580118_5580119 chr3R_5579562_5580060;chr3R_5580119_5580344 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 6.67 NA NA NA NA 6.67 NA NA NA 4.76 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K cassette blow,RI_chr2R_3470434_3470776 chr2R - chr2R_3470434_3474436 chr2R_3470434_3472560;chr2R_3472863_3474436 chr2R_3472561_3472862 chr2R_3470334_3470433;chr2R_3474437_3474581 95.34 92.65 98.28 91.84 93.88 93.33 94.74 95.83 97.33 88.52 97.87 95.00 97.44 95.00 94.12 96.59 100.00 98.25 98.59 90.48 97.87 91.18 91.51 95.51 86.21 98.44 97.53 94.92 93.91 96.47 86.14 94.67 93.37 96.49 98.75 95.06 93.68 94.44 96.59 94.23 92.11 95.35 98.15 98.94 91.60 96.23 93.90 95.34 96.69 98.75 96.30 98.36 97.92 94.29 98.78 91.04 94.69 96.12 K intron_retention B52,F_chr3R_9488762_9491174,E_chr3R_9488770_9491174,RI_chr3R_9489655_9489713 chr3R + chr3R_9488774_9490124 chr3R_9488773_9488774;chr3R_9490124_9490125 chr3R_9488692_9488773;chr3R_9490125_9490274 100.00 100.00 94.74 NA 100.00 100.00 95.24 95.00 97.37 96.43 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 94.23 100.00 96.30 100.00 100.00 100.00 100.00 96.15 98.04 95.24 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 91.30 97.62 96.77 95.24 98.00 95.65 97.83 100.00 96.55 100.00 100.00 96.77 100.00 92.59 K intron_retention CG7816,R_chr3R_25691122_25691551,RI_chr3R_25691122_25692883,RI_chr3R_25691122_25694436 chr3R - chr3R_25691122_25692883 chr3R_25691121_25691122;chr3R_25692883_25692884 chr3R_25691022_25691121;chr3R_25692884_25692958 3.54 2.34 3.28 8.33 1.83 4.60 4.17 4.60 2.61 3.19 5.32 5.00 1.52 3.92 2.83 3.51 3.19 4.08 5.26 3.38 3.67 2.63 5.59 3.36 1.47 3.57 3.60 13.79 5.13 6.82 4.35 8.20 6.25 3.54 4.94 0.00 1.68 4.17 1.77 9.24 0.00 3.49 5.00 4.48 0.00 4.46 0.00 16.33 1.79 1.20 4.14 2.41 2.06 1.35 3.31 2.22 2.61 10.77 K alternative_donor CG3077 chr2L - chr2L_2765428_2765504 chr2L_2765428_2765495 chr2L_2765284_2765427;chr2L_2765505_2765675 93.33 90.91 94.44 100.00 100.00 92.86 100.00 95.65 96.15 92.86 100.00 92.31 NA 92.31 76.47 93.75 90.91 92.31 84.62 89.66 100.00 95.24 97.30 92.86 78.57 92.31 93.33 84.62 100.00 100.00 100.00 93.75 87.50 94.74 100.00 92.86 93.10 94.12 80.95 81.48 85.71 96.97 92.31 93.75 94.12 86.96 86.67 85.00 95.24 94.44 95.65 94.12 93.33 100.00 93.33 90.91 90.91 89.47 K alternative_donor CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4839655;chr3R_4839215_4839851;chr3R_4839215_4839728;chr3R_4839215_4839889;chr3R_4839215_4839799 chr3R_4839215_4839561 chr3R_4839038_4839214;chr3R_4839890_4839901 50.00 66.67 50.00 45.45 40.00 44.44 50.00 54.55 42.86 33.33 25.00 45.45 42.86 50.00 44.44 66.67 50.00 66.67 57.14 26.67 66.67 83.33 50.00 66.67 100.00 42.86 80.00 100.00 50.00 66.67 50.00 50.00 66.67 40.00 75.00 100.00 75.00 75.00 75.00 62.50 75.00 41.18 36.36 60.00 100.00 55.56 40.00 44.44 44.44 44.44 83.33 50.00 100.00 60.00 44.44 50.00 57.14 100.00 K mutually_exclusive CG11009,I_chr3L_12844823_12845526,I_chr3L_12845441_12845526 chr3L + chr3L_12844823_12845526,chr3L_12845629_12845715 chr3L_12844823_12845331,chr3L_12845378_12845715 chr3L_12845527_12845628 chr3L_12845332_12845377 chr3L_12844723_12844822;chr3L_12845716_12845816 77.78 66.67 71.43 96.15 57.14 NA 83.33 84.62 90.00 71.43 63.64 91.67 NA NA 80.00 100.00 NA 77.78 62.50 100.00 100.00 NA 83.33 63.64 71.43 NA 62.50 100.00 NA NA 91.67 88.89 77.78 62.50 NA 30.00 75.00 NA NA NA 75.00 84.62 NA 66.67 85.71 92.31 70.00 100.00 75.00 75.00 61.54 77.78 NA 71.43 63.64 77.78 42.86 81.82 K intron_retention CG8594 chr2R + chr2R_8462126_8462183 chr2R_8462125_8462126;chr2R_8462183_8462184 chr2R_8461739_8462125;chr2R_8462184_8462342 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor mRpL20,I_chr3L_13010705_13010775,RI_chr3L_13010729_13010775 chr3L - chr3L_13010729_13010775;chr3L_13010705_13010775 chr3L_13010713_13010775 chr3L_13010776_13010875;chr3L_13010629_13010704 96.30 100.00 92.59 88.89 100.00 95.83 100.00 92.31 96.88 100.00 87.50 95.65 100.00 100.00 96.15 86.36 100.00 90.32 100.00 96.88 100.00 NA 96.55 91.30 85.71 95.65 95.24 100.00 92.86 100.00 80.77 100.00 91.30 93.33 92.86 100.00 94.12 100.00 100.00 100.00 100.00 93.75 100.00 85.71 96.15 93.10 96.30 100.00 95.12 92.86 96.43 100.00 92.59 96.67 96.15 96.30 100.00 96.67 K intron_retention CG1814,Updo chr2R + chr2R_5468712_5468770 chr2R_5468711_5468712;chr2R_5468770_5468771 chr2R_5468571_5468711;chr2R_5468771_5468922 13.18 16.67 8.33 21.88 6.67 10.53 40.48 5.00 22.22 NA 29.41 27.78 5.88 10.53 7.14 10.81 10.53 11.54 7.41 12.20 13.04 18.18 10.87 15.38 38.10 42.11 15.38 10.53 20.51 3.57 11.54 13.33 18.52 9.09 16.67 16.13 14.29 10.53 14.29 17.39 44.44 12.50 20.00 11.11 11.11 13.33 14.29 6.90 13.95 9.52 19.05 21.05 12.50 14.29 5.00 13.51 9.09 7.32 K jcn_only_AD CG8184,I_chrX_15620707_15620769 chrX + chrX_15608415_15608749 chrX_15608427_15608749 chrX_15608750_15608989;chrX_15607958_15608414 47.97 46.97 50.70 45.79 52.94 55.56 51.69 45.37 48.50 53.19 60.00 50.86 54.93 51.06 56.14 49.06 56.72 48.39 50.59 37.11 60.78 64.06 42.73 48.98 38.98 38.10 46.25 41.38 37.93 37.50 47.54 NA 45.45 41.96 55.56 40.28 51.64 50.00 57.39 43.02 NA 56.31 45.90 33.82 NA NA NA 41.07 42.57 NA 33.72 44.19 NA NA 37.50 NA NA NA K jcn_only_AA I_chr3R_1303481_1304607,CG31550 chr3R + chr3R_1312607_1312781 chr3R_1312607_1312772 chr3R_1312598_1312606;chr3R_1312782_1312899 93.65 84.62 88.46 100.00 100.00 NA 93.75 94.87 87.50 NA NA 96.30 NA NA 90.48 93.55 NA 92.31 95.00 91.67 NA NA 94.29 93.10 NA NA 90.00 NA NA NA 95.45 NA 93.10 95.83 NA NA 93.33 NA 78.79 96.88 NA 89.74 NA 88.00 89.29 89.29 100.00 NA 96.43 96.55 94.59 NA NA NA 95.45 95.45 100.00 82.61 K intron_retention Dlic chrX + chrX_11048699_11049081 chrX_11048698_11048699;chrX_11049081_11049082 chrX_11048472_11048698;chrX_11049082_11049261 100.00 90.00 NA 100.00 NA NA 87.50 100.00 95.24 100.00 100.00 94.44 NA 87.50 NA 100.00 NA 100.00 NA 94.74 NA 100.00 92.86 100.00 90.00 NA 100.00 NA 100.00 NA 90.00 NA 100.00 100.00 NA NA 94.74 90.91 100.00 94.44 100.00 100.00 NA NA NA 90.00 NA 100.00 92.31 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention Syb chr2R - chr2R_6137333_6138383 chr2R_6137332_6137333;chr2R_6138383_6138384 chr2R_6137005_6137332;chr2R_6138384_6138649 0.38 0.41 0.00 2.51 0.00 0.00 0.38 0.46 0.53 0.31 2.11 0.59 0.00 0.87 0.69 0.71 0.00 0.31 0.63 0.50 1.88 0.98 0.85 0.17 0.00 0.00 0.62 1.22 0.45 0.46 0.22 0.20 0.12 0.48 0.29 0.26 0.00 1.02 0.29 0.15 0.00 0.64 0.68 0.00 0.13 0.25 0.00 0.41 0.38 0.00 0.65 0.67 0.00 0.39 0.49 0.18 0.38 0.17 K alternative_donor NaCP60E,I_chr2R_20805053_20805170 chr2R + chr2R_20805005_20805170;chr2R_20805101_20805170 chr2R_20805053_20805170 chr2R_20805171_20805270;chr2R_20804953_20805004 0.00 20.00 NA 0.00 NA NA NA 0.00 18.18 NA NA 9.09 NA NA NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA NA 14.29 0.00 25.00 0.00 0.00 0.00 25.00 NA 0.00 0.00 NA 0.00 NA NA 25.00 0.00 NA 0.00 0.00 NA 0.00 NA 14.29 NA NA NA NA 0.00 K intron_retention Pect,I_chr2L_13207997_13208109,E_chr2L_13208285_13210076 chr2L + chr2L_13208778_13209435 chr2L_13208777_13208778;chr2L_13209435_13209436 chr2L_13208665_13208777;chr2L_13209436_13209452 13.33 18.00 15.52 8.38 9.43 12.73 30.61 15.45 14.17 8.33 13.51 15.13 11.84 16.39 12.99 18.18 10.71 15.38 21.92 10.34 7.69 13.64 11.25 16.39 21.28 10.94 17.81 17.65 5.71 8.00 15.87 16.13 13.33 16.67 9.80 16.67 19.51 16.67 8.00 14.29 17.39 13.68 8.33 6.38 9.68 12.77 17.31 10.81 17.43 9.76 6.82 11.86 13.04 0.00 16.95 4.88 10.26 13.16 K intron_retention CG1440 chrX + chrX_8331328_8332952 chrX_8331327_8331328;chrX_8332952_8332953 chrX_8331282_8331327;chrX_8332953_8333070 30.77 NA NA NA NA 33.33 18.18 NA 25.00 NA NA 35.71 NA NA NA NA NA NA NA 18.75 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA 30.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA jet chr2L - chr2L_4948560_4948897 chr2L_4948772_4948897 chr2L_4948898_4949817;chr2L_4948202_4948559 13.39 16.67 NA NA NA NA NA NA 0.00 NA NA 18.18 NA NA NA NA NA 27.27 NA 14.29 NA NA 12.50 10.81 NA NA NA 9.52 NA NA NA 30.00 NA NA NA NA 8.57 8.00 8.82 22.22 NA 16.00 NA 14.29 7.14 17.39 7.69 NA 4.00 14.81 8.00 NA NA 19.35 NA 25.00 6.25 NA K intron_retention CG6995 chr3R + chr3R_20644572_20646818 chr3R_20644571_20644572;chr3R_20646818_20646819 chr3R_20644527_20644571;chr3R_20646819_20646968 61.11 NA NA NA NA NA 81.25 61.54 71.43 NA NA 53.33 NA NA NA NA NA NA NA NA NA NA 69.23 NA NA NA 50.00 NA NA NA 40.00 NA NA 60.00 NA NA NA NA 33.33 NA NA 61.11 NA NA NA 70.00 NA 54.55 78.57 54.55 87.50 NA NA NA NA NA NA NA K intron_retention CG32016,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_978340_978914 chr4_978339_978340;chr4_978914_978915 chr4_977623_978339;chr4_978915_978920 100.00 90.91 100.00 95.65 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 93.33 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA K intron_retention noncoding_7369,CG15615 chr2R - chr2R_12678706_12678875 chr2R_12678705_12678706;chr2R_12678875_12678876 chr2R_12678596_12678705;chr2R_12678876_12678958 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.66 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG17082,I_chr2R_632143_635290,R_chr2R_642176_644740,I_chr2R_644094_644145,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_631984_636726;chr2R_632083_636726;chr2R_631907_636726;chr2R_631971_636726 chr2R_632143_636726 chr2R_636727_636891;chr2R_631902_631906 56.25 NA NA 68.09 NA NA 55.26 65.71 46.34 NA NA 52.38 NA 40.91 NA 58.33 52.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 64.52 NA NA NA NA NA NA NA 56.25 NA NA NA NA NA NA 62.07 NA NA NA NA NA NA NA NA NA K intron_retention CG13384 chr2L + chr2L_8385098_8386216 chr2L_8385097_8385098;chr2L_8386216_8386217 chr2L_8385003_8385097;chr2L_8386217_8386384 20.06 19.29 15.48 20.05 19.83 19.00 20.79 19.67 20.87 28.63 21.64 17.78 25.80 18.53 19.23 24.89 18.92 18.09 20.81 14.94 22.11 23.40 19.97 22.68 15.02 17.09 16.74 37.84 22.16 19.78 18.50 26.70 40.29 15.46 20.06 20.62 23.40 17.08 20.94 21.15 27.32 20.00 15.43 23.77 21.43 24.50 15.76 36.24 18.92 30.83 13.92 20.72 17.97 16.00 16.87 25.82 20.60 27.52 K intron_retention Pkc98E chr3R + chr3R_24865087_24866817 chr3R_24865086_24865087;chr3R_24866817_24866818 chr3R_24864919_24865086;chr3R_24866818_24867147 5.56 14.29 4.17 2.38 NA 5.56 14.29 2.70 10.87 NA 0.00 13.79 5.56 14.81 0.00 0.00 NA 5.56 0.00 6.90 NA 9.52 5.56 NA 23.08 0.00 14.29 NA 23.53 7.41 4.00 NA 5.26 2.86 5.00 11.76 16.67 NA 0.00 5.41 NA 11.11 4.76 NA NA 0.00 NA 0.00 11.76 NA 0.00 NA NA NA 9.09 NA NA 0.00 K alternative_acceptor Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754356_15755184;chrX_15754356_15755172;chrX_15754356_15755268;chrX_15754356_15755409 chrX_15754356_15755256 chrX_15754256_15754355;chrX_15755410_15755509 22.73 33.33 25.00 26.67 37.50 NA 18.18 24.00 19.51 NA NA 35.82 23.91 25.00 16.67 18.87 22.73 25.00 22.58 20.00 NA 16.67 28.00 20.00 33.33 NA 20.00 NA 27.27 23.53 22.73 NA 19.35 36.73 18.75 NA 21.74 NA NA 21.43 21.43 29.17 21.21 21.74 14.29 32.00 NA 21.05 20.00 NA 42.11 18.75 NA 25.00 28.00 NA 20.00 37.50 K alternative_donor Patj,CG12022 chr3L + chr3L_1798924_1799009 chr3L_1798954_1799009 chr3L_1799010_1800699;chr3L_1798831_1798923 77.35 81.82 81.25 76.19 60.00 75.00 93.33 77.78 75.86 63.64 53.33 91.67 NA 88.89 77.78 90.91 75.00 75.00 64.29 83.33 90.00 90.48 68.18 78.57 76.92 60.00 86.67 94.12 90.91 77.78 68.75 73.33 82.61 70.00 81.82 71.43 73.53 76.92 63.16 75.86 60.00 75.00 66.67 80.95 76.92 62.50 80.00 65.00 94.12 90.00 92.86 77.78 92.86 75.00 77.78 91.67 75.00 84.21 K jcn_only_AA Smc5,I_chr3L_21566234_21566275 chr3L + chr3L_21566234_21566289 chr3L_21566234_21566275 chr3L_21566134_21566233;chr3L_21566290_21566375 1.72 6.94 0.00 0.00 4.00 2.08 1.79 1.08 3.39 4.35 2.13 0.00 4.00 0.00 3.51 1.28 0.00 1.56 0.00 0.81 7.69 2.78 2.06 0.00 0.00 2.17 1.18 2.50 0.00 5.26 1.43 2.63 3.70 0.00 3.92 0.00 0.00 1.54 2.02 1.35 0.00 1.92 0.00 5.08 0.00 1.49 2.70 4.55 1.90 2.78 1.82 0.00 1.72 2.15 1.69 1.35 0.87 1.82 K intron_retention Gfr chr3R - chr3R_4129511_4129570 chr3R_4129510_4129511;chr3R_4129570_4129571 chr3R_4128787_4129510;chr3R_4129571_4129848 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA 0.00 6.25 NA NA NA 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K alternative_acceptor Hrb98DE,I_chr3R_24425722_24426084,I_chr3R_24425722_24428493,I_chr3R_24426291_24426781,RI_chr3R_24429041_24431183 chr3R + chr3R_24425722_24426439 chr3R_24425722_24426427 chr3R_24425622_24425721;chr3R_24426440_24426915 22.55 15.58 21.59 29.58 18.92 22.64 16.67 29.21 23.64 34.62 23.08 21.80 15.56 17.65 16.22 18.99 18.75 15.52 20.59 21.77 NA 24.53 25.30 26.87 37.70 32.14 23.81 18.42 21.21 30.51 22.12 17.33 22.73 23.00 25.86 27.14 13.95 19.57 23.91 23.02 28.30 23.21 26.92 25.00 21.21 20.83 25.37 16.53 26.28 22.73 23.91 17.14 22.45 32.84 20.69 16.90 21.31 13.85 K alternative_donor LIMK1,I_chrX_12488942_12489000 chrX - chrX_12484518_12486000;chrX_12484518_12485963 chrX_12484518_12486079 chrX_12483874_12484517;chrX_12486080_12486162 4.00 5.56 0.00 3.03 0.00 10.53 4.00 2.86 9.09 0.00 4.76 2.56 6.25 8.70 4.17 2.94 0.00 4.55 5.00 6.52 9.52 25.00 0.00 0.00 8.33 0.00 4.76 0.00 2.86 0.00 3.45 0.00 4.08 2.56 0.00 3.70 6.06 4.17 4.55 2.44 6.67 14.58 13.33 3.85 0.00 5.88 8.33 6.67 5.41 8.33 3.33 0.00 9.09 0.00 3.70 7.69 0.00 0.00 K jcn_only_AA Su(dx),RE_chr2L_2038009_2039919,CG31672 chr2L + chr2L_2042570_2042665 chr2L_2042570_2042652 chr2L_2041647_2042569;chr2L_2042666_2042851 100.00 100.00 100.00 100.00 100.00 100.00 99.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.29 100.00 99.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.85 100.00 99.78 100.00 100.00 100.00 100.00 100.00 99.44 99.75 100.00 100.00 99.18 100.00 99.66 99.63 100.00 99.57 99.63 100.00 98.64 100.00 100.00 100.00 100.00 100.00 100.00 99.58 K cassette mbl,I_chr2R_13163569_13203579 chr2R + chr2R_13249603_13261322 chr2R_13249603_13260581;chr2R_13260667_13261322 chr2R_13260582_13260666 chr2R_13249485_13249602;chr2R_13261323_13261529 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Sans,RI_chr2R_8825985_8826072,I_chr2R_8826501_8826591 chr2R + chr2R_8824602_8825904;chr2R_8824493_8825904 chr2R_8824595_8825904 chr2R_8825905_8825980;chr2R_8824445_8824492 39.05 NA NA NA NA NA NA NA 30.00 NA NA NA NA NA NA NA NA NA NA 38.10 NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.00 K jcn_only_AA cnn,I_chr2R_9330634_9331165,I_chr2R_9331192_9331257,I_chr2R_9333096_9336812,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9331848_9331932;chr2R_9330634_9331932 chr2R_9330664_9331932 chr2R_9331933_9332199 0.00 0.00 0.00 6.58 1.49 0.00 3.16 0.00 0.00 4.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 3.12 1.54 1.16 0.91 2.44 0.00 1.37 0.00 1.64 1.18 1.79 8.93 0.00 0.00 1.25 0.00 1.85 0.72 0.00 1.75 0.00 0.00 0.00 2.63 0.00 0.00 0.00 2.94 0.00 0.00 1.35 0.00 0.00 0.00 K jcn_only_AA CG4829,I_chrX_16717240_16717547 chrX + chrX_16717240_16717619;chrX_16717240_16717889 chrX_16717240_16717547 chrX_16717140_16717239;chrX_16717890_16718151 1.65 1.92 0.78 0.83 0.90 0.36 0.36 2.03 1.49 3.23 2.25 1.11 3.91 1.54 2.54 1.59 1.69 1.35 1.39 0.77 1.24 3.76 1.95 1.42 2.28 6.44 1.64 3.12 2.83 1.74 5.51 1.50 3.19 0.93 3.32 1.08 1.62 1.20 1.33 2.55 3.23 1.65 2.50 1.09 4.09 1.21 2.36 1.72 1.21 2.50 2.01 3.26 0.97 1.48 1.75 1.75 1.12 0.61 K mutually_exclusive CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21275807_21279883,chr2L_21280448_21281131 chr2L_21275807_21277229,chr2L_21278430_21281131 chr2L_21279884_21280447 chr2L_21277230_21278429 chr2L_21275724_21275806;chr2L_21281132_21281337 66.67 66.67 50.00 50.00 60.00 66.67 66.67 66.67 70.00 66.67 50.00 62.50 66.67 75.00 40.00 66.67 75.00 66.67 80.00 66.67 50.00 71.43 72.73 60.00 83.33 66.67 62.50 50.00 50.00 66.67 57.14 66.67 71.43 66.67 66.67 85.71 70.00 66.67 66.67 63.64 66.67 50.00 80.00 57.14 60.00 75.00 66.67 80.00 63.64 80.00 70.00 80.00 75.00 83.33 60.00 66.67 83.33 80.00 K jcn_only_AD scrib,I_chr3R_22362324_22363015,I_chr3R_22381374_22399575,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22362244_22363092;chr3R_22362120_22363092;chr3R_22362315_22363092;chr3R_22362254_22363092;chr3R_22362224_22363092;chr3R_22362142_22363092 chr3R_22362324_22363092 chr3R_22363093_22363115;chr3R_22362112_22362119 19.01 34.62 14.29 9.52 17.50 19.70 15.00 11.73 24.00 54.72 18.29 15.38 26.67 10.11 13.27 17.43 14.77 18.89 22.22 11.95 16.28 5.88 32.26 29.29 37.50 22.50 33.33 43.24 25.18 16.59 16.67 14.86 17.07 16.67 16.03 21.09 38.10 37.31 35.96 37.11 18.18 18.18 18.29 31.37 14.93 18.52 30.77 25.20 17.09 35.42 25.41 40.00 27.91 29.63 19.01 36.73 35.56 16.13 K jcn_only_AA Abi,RI_chr3R_9946195_9946332 chr3R - chr3R_9946505_9946568 chr3R_9946508_9946568 chr3R_9946569_9946637;chr3R_9946417_9946504 90.68 90.70 90.58 90.71 91.02 94.54 91.04 90.68 87.66 89.55 93.29 90.75 87.16 88.97 92.11 90.26 93.38 96.57 90.57 89.64 88.95 88.67 90.93 93.58 92.56 87.98 89.04 88.24 89.22 91.30 88.89 92.22 89.10 93.80 92.42 94.09 87.23 87.50 88.56 88.36 91.94 90.68 91.78 91.23 87.59 93.45 86.31 91.11 88.38 91.50 87.23 89.55 90.84 93.36 90.53 88.78 93.15 93.53 K intron_retention Tsc1 chr3R + chr3R_19959171_19959227 chr3R_19959170_19959171;chr3R_19959227_19959228 chr3R_19957979_19959170;chr3R_19959228_19959385 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CoRest chrX + chrX_19417963_19418022 chrX_19417962_19417963;chrX_19418022_19418023 chrX_19417748_19417962;chrX_19418023_19418196 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG2003 chr3R + chr3R_27812832_27814973;chr3R_27812907_27814973 chr3R_27812850_27814973 chr3R_27814974_27815051;chr3R_27812763_27812831 90.99 90.91 88.46 93.75 92.86 87.50 92.86 90.74 92.96 100.00 95.24 91.30 92.50 86.67 88.89 91.07 96.00 92.31 93.33 87.50 86.67 87.50 94.12 93.75 88.89 90.48 85.71 NA 90.91 94.44 95.00 94.74 81.58 90.57 90.91 87.50 90.91 100.00 100.00 92.31 81.48 90.91 87.50 94.12 94.44 91.67 88.89 88.89 91.67 87.50 90.91 90.91 100.00 85.71 90.00 100.00 92.31 97.83 K alternative_donor CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3071308_3073080;chr3L_3071190_3073080 chr3L_3071298_3073080 chr3L_3073081_3073149;chr3L_3071183_3071189 3.33 NA 0.00 0.00 NA NA 8.33 13.33 NA NA NA 0.00 0.00 NA 9.09 6.90 NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA 9.09 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 6.90 NA NA NA NA NA NA NA NA NA K intron_retention Mocs1,I_chr3L_11064230_11064309 chr3L + chr3L_11064086_11064150 chr3L_11064085_11064086;chr3L_11064150_11064151 chr3L_11063683_11064085;chr3L_11064151_11064229 0.00 NA NA 10.00 NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 4.35 2.63 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 K jcn_only_AA I_chr3R_25875159_25875219,CG34317,CG7950,noncoding_20085,F_chr3R_25908044_25945850 chr3R + chr3R_25882757_25882861 chr3R_25882757_25882837 chr3R_25882665_25882756;chr3R_25882862_25882884 21.38 10.81 26.74 23.66 16.67 19.23 21.35 21.90 21.84 11.63 33.33 27.72 22.58 20.00 17.58 23.68 22.00 26.39 24.44 17.26 24.00 19.15 17.54 19.30 19.57 16.00 25.93 28.57 19.18 15.25 19.01 19.28 21.98 18.52 29.09 21.88 26.47 22.50 9.80 21.38 22.31 21.54 25.00 16.39 22.52 18.79 24.49 23.46 19.70 19.51 19.75 29.41 20.73 20.00 21.93 19.30 14.71 21.38 K intron_retention Marf,I_chrX_6263726_6263783 chrX + chrX_6264023_6264091 chrX_6264022_6264023;chrX_6264091_6264092 chrX_6263826_6264022;chrX_6264092_6264943 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 1.27 0.00 0.00 0.00 0.66 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG17683,I_chr2R_18774_18869 chr2R + chr2R_19470_19541 chr2R_19485_19541 chr2R_19542_19695;chr2R_19065_19469 100.00 94.12 94.44 100.00 100.00 100.00 96.55 100.00 94.29 92.86 100.00 96.55 94.44 100.00 100.00 100.00 100.00 94.74 100.00 98.04 94.74 100.00 100.00 100.00 96.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 95.83 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor RhoGDI chr3L + chr3L_19921875_19923920 chr3L_19921875_19923914 chr3L_19921868_19921874;chr3L_19923921_19924114 100.00 90.91 100.00 100.00 NA 100.00 92.31 100.00 100.00 100.00 100.00 100.00 NA 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 NA 95.65 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA K intron_retention B52,F_chr3R_9488762_9491174,E_chr3R_9488770_9491174,RI_chr3R_9489655_9489713 chr3R + chr3R_9488774_9489176 chr3R_9488773_9488774;chr3R_9489176_9489177 chr3R_9488692_9488773;chr3R_9489177_9489572 53.85 56.25 50.00 NA 53.85 70.00 71.43 86.67 69.57 61.90 69.23 60.00 75.00 61.54 63.16 52.00 64.29 NA 63.16 64.29 61.54 32.00 63.64 52.00 61.90 63.64 55.00 33.33 22.22 33.33 25.00 47.06 29.17 65.38 50.00 35.48 42.42 45.45 56.52 47.37 43.75 67.86 38.46 33.33 19.05 51.61 60.00 31.25 72.97 43.75 41.38 46.15 66.67 46.67 57.89 40.00 66.67 28.57 K intron_retention Pmi,PGRP-LD chr3L + chr3L_5774823_5775096 chr3L_5774822_5774823;chr3L_5775096_5775097 chr3L_5774787_5774822;chr3L_5775097_5775408 7.14 0.00 6.06 9.68 3.85 3.45 11.76 13.33 7.95 6.25 NA 5.63 4.76 0.00 9.38 19.05 18.18 NA 9.52 11.86 0.00 21.74 7.27 3.45 8.33 0.00 12.90 5.56 9.68 22.22 9.76 10.00 4.17 3.12 15.38 7.14 6.98 4.17 7.14 7.14 7.14 5.49 0.00 7.14 0.00 2.08 4.65 NA 9.23 9.09 20.00 0.00 8.89 3.33 13.79 0.00 4.20 4.55 K intron_retention Arp87C chr3R + chr3R_8518430_8518491 chr3R_8518429_8518430;chr3R_8518491_8518492 chr3R_8518365_8518429;chr3R_8518492_8518666 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.74 1.75 1.43 0.00 0.00 1.45 0.00 2.70 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette spin,I_chr2R_12013288_12013847 chr2R + chr2R_12020141_12023531 chr2R_12020141_12020926;chr2R_12021189_12023531 chr2R_12020927_12021188 chr2R_12020064_12020140;chr2R_12023532_12023630 98.64 99.56 99.46 98.64 100.00 99.35 99.45 99.50 99.72 97.60 99.34 98.64 98.70 99.27 99.43 100.00 100.00 99.26 99.34 99.68 99.42 93.71 98.57 97.01 95.65 97.90 97.64 90.82 95.41 95.24 99.39 97.48 95.91 99.57 97.62 97.85 98.80 96.48 98.18 97.12 99.32 99.44 99.15 98.75 97.25 97.97 97.77 96.73 98.88 94.08 96.68 99.28 99.33 98.64 98.97 97.42 97.92 97.34 K intron_retention bon chr3R + chr3R_16435123_16435685 chr3R_16435122_16435123;chr3R_16435685_16435686 chr3R_16434948_16435122;chr3R_16435686_16436022 1.27 0.00 2.00 4.76 0.00 0.00 2.04 0.00 0.00 0.00 0.00 3.85 15.00 0.00 4.08 2.13 0.00 2.50 5.56 1.19 0.00 5.41 1.27 2.27 0.00 0.00 3.95 5.71 0.00 3.70 6.25 0.00 1.82 5.17 5.00 4.00 0.00 0.00 2.35 9.52 0.00 2.06 0.00 0.00 4.55 0.00 0.00 5.66 6.56 0.00 2.38 3.45 0.00 0.00 0.00 0.00 0.00 3.45 K intron_retention ca,CG7802 chr3R + chr3R_25634729_25635010 chr3R_25634728_25634729;chr3R_25635010_25635011 chr3R_25634191_25634728;chr3R_25635011_25635543 0.00 3.45 0.00 22.73 0.00 0.00 3.70 8.33 4.08 0.00 0.00 4.44 0.00 0.00 0.00 0.00 10.34 0.00 0.00 4.88 0.00 0.00 3.92 2.94 0.00 0.00 4.44 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 4.65 0.00 0.00 3.33 0.00 5.13 4.55 0.00 NA 0.00 NA 3.45 2.27 0.00 3.03 0.00 0.00 NA 0.00 NA NA NA K alternative_donor CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25318474_25319136;chr3R_25318474_25319163;chr3R_25318474_25319142;chr3R_25318474_25318925;chr3R_25318474_25319093;chr3R_25318474_25318971;chr3R_25318474_25319004 chr3R_25318474_25319167 chr3R_25318374_25318473;chr3R_25319168_25319224 78.33 74.32 72.94 73.96 84.34 76.55 65.00 83.91 81.23 78.74 66.07 75.75 80.65 77.05 78.33 74.82 79.23 83.10 77.08 74.18 69.50 85.31 79.87 80.99 76.00 74.03 76.44 76.19 69.06 80.95 72.58 75.69 57.89 80.88 79.64 78.20 84.29 74.30 82.01 81.12 50.00 82.10 80.15 82.01 76.61 75.32 82.94 55.66 80.34 80.91 78.93 79.43 79.08 78.99 77.97 79.66 85.88 70.21 K intron_retention CG10737 chr2R + chr2R_15062814_15063692 chr2R_15062813_15062814;chr2R_15063692_15063693 chr2R_15062592_15062813;chr2R_15063693_15063852 1.54 0.00 0.87 1.80 2.20 0.00 1.94 1.75 1.61 0.00 0.00 1.52 3.37 2.30 0.00 1.34 0.00 0.00 0.00 0.00 0.00 1.89 0.00 1.67 2.67 1.94 0.00 11.11 4.29 1.67 1.12 3.96 3.76 1.35 0.00 0.00 1.75 2.02 1.54 3.68 0.00 1.83 0.00 1.29 1.83 1.97 0.69 3.52 2.05 2.60 0.65 0.00 0.88 0.00 1.61 3.33 0.00 1.66 K alternative_last_exon fru chr3R - chr3R_14248905_14256553;chr3R_14243023_14256553 chr3R_14252889_14256553 chr3R_14245340_14248904;chr3R_14241177_14243022 chr3R_14251658_14252888 chr3R_14256554_14256686 12.50 12.50 18.07 14.60 20.90 17.14 16.67 12.90 14.81 8.93 17.46 17.16 13.59 14.47 17.28 13.01 13.70 16.48 14.13 13.40 14.75 18.85 11.29 8.51 12.00 16.00 11.24 17.46 8.43 8.60 11.59 6.00 8.26 13.48 9.72 10.75 13.10 9.09 13.08 10.07 6.12 13.29 14.71 8.89 4.92 5.00 5.80 10.45 13.04 5.66 9.09 8.00 6.90 4.76 15.48 3.77 4.08 4.12 K intron_retention Tal chr2R + chr2R_19828704_19828762 chr2R_19828703_19828704;chr2R_19828762_19828763 chr2R_19828580_19828703;chr2R_19828763_19829736 0.30 0.00 0.52 1.30 0.00 0.00 0.00 0.00 0.85 0.00 0.69 0.70 0.00 0.79 0.50 0.73 0.00 1.52 0.00 1.10 0.00 0.00 0.00 0.00 0.56 1.19 0.98 3.27 4.88 0.00 1.46 0.00 0.93 0.88 0.00 0.62 0.27 0.00 0.88 0.39 0.00 0.30 0.00 0.33 1.87 1.06 0.40 0.00 0.39 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.78 0.00 K intron_retention Indy chr3L - chr3L_18823835_18823939 chr3L_18823834_18823835;chr3L_18823939_18823940 chr3L_18823376_18823834;chr3L_18823940_18824128 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Dif,I_chr2L_17414333_17414528,I_chr2L_17418395_17418487 chr2L - chr2L_17420114_17428007 chr2L_17420114_17427655 chr2L_17420066_17420113;chr2L_17428008_17428172 97.14 100.00 NA 97.14 NA NA 100.00 98.00 96.36 NA NA 96.00 94.29 100.00 100.00 98.39 100.00 100.00 97.14 96.08 100.00 86.49 96.36 92.00 NA 95.45 97.14 90.00 NA 95.83 100.00 NA 81.82 97.73 NA 93.10 NA NA 93.75 100.00 NA 98.00 100.00 95.45 NA NA NA 95.00 100.00 100.00 94.12 100.00 92.00 NA 92.11 NA 100.00 96.15 K intron_retention CG16817 chr3R + chr3R_5504387_5504441 chr3R_5504386_5504387;chr3R_5504441_5504442 chr3R_5504284_5504386;chr3R_5504442_5504698 100.00 NA NA 91.67 NA NA 88.89 100.00 94.12 NA NA 100.00 NA NA 100.00 100.00 NA NA NA 93.75 NA NA 90.91 NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA 100.00 100.00 100.00 K intron_retention Cap-H2 chr3R + chr3R_6591282_6591749 chr3R_6591281_6591282;chr3R_6591749_6591750 chr3R_6591236_6591281;chr3R_6591750_6591850 93.33 100.00 85.71 100.00 NA 90.00 93.75 100.00 90.48 100.00 100.00 90.48 84.62 100.00 100.00 100.00 100.00 92.31 90.91 88.46 NA 84.62 95.00 76.92 100.00 100.00 76.47 70.00 NA 92.86 NA 92.31 100.00 95.83 88.89 100.00 100.00 100.00 92.86 95.24 100.00 94.12 87.50 94.44 72.73 93.33 85.71 93.33 75.00 90.91 86.67 88.89 100.00 NA 92.86 80.00 NA 93.75 K intron_retention CG5805 chr3R - chr3R_20611637_20611694 chr3R_20611636_20611637;chr3R_20611694_20611695 chr3R_20611509_20611636;chr3R_20611695_20612624 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RpL29,I_chr2R_17184688_17191389 chr2R + chr2R_17181384_17181558;chr2R_17181295_17181558 chr2R_17181380_17181558 chr2R_17181559_17181664;chr2R_17181294_17181294 98.17 98.21 98.24 98.95 98.10 97.91 98.99 98.77 98.70 98.18 98.01 98.05 97.90 98.90 98.67 98.78 98.56 98.34 98.21 98.33 98.44 100.00 98.01 98.24 96.97 98.20 94.81 98.06 97.97 97.53 97.87 95.91 97.39 98.40 95.45 97.37 97.87 97.95 96.77 98.83 94.93 98.77 98.30 97.95 98.31 96.11 98.06 97.20 98.38 98.19 98.76 98.17 97.88 95.00 98.25 97.37 98.49 96.01 K cassette lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3963954_3965235 chr2R_3963954_3964764;chr2R_3964798_3965235 chr2R_3964765_3964797 chr2R_3963798_3963953;chr2R_3965236_3966123 15.65 14.90 22.70 9.76 18.84 13.73 9.04 17.44 15.19 19.51 14.93 13.75 41.18 17.27 14.74 17.86 15.97 24.81 20.61 18.39 15.65 14.49 18.31 19.44 17.96 5.42 13.87 21.98 13.16 15.05 17.78 16.08 15.03 16.44 15.18 15.79 21.08 15.04 17.66 15.64 19.82 15.81 19.19 16.29 12.56 15.16 15.46 13.13 13.82 13.09 14.63 18.75 12.61 14.77 17.20 16.73 13.15 10.75 K jcn_only_AD Mtch,RI_chr3L_184729_185366,I_chr3L_185367_185925 chr3L + chr3L_184670_184774 chr3L_184682_184774 chr3L_184775_185000;chr3L_184665_184669 54.77 NA 61.54 47.62 NA 38.10 54.17 40.62 70.45 NA 59.09 61.29 60.00 51.72 64.71 56.52 NA NA 43.48 47.62 NA NA NA NA NA 48.00 NA NA NA NA 54.55 47.83 NA 69.44 NA NA NA NA NA 48.84 NA 58.00 NA NA 59.38 55.00 NA 50.00 61.54 NA NA NA NA NA 67.65 NA NA 48.48 K cassette kst,I_chr3L_3365752_3365816,I_chr3L_3367008_3367514 chr3L + chr3L_3366311_3367514 chr3L_3366311_3366443;chr3L_3367008_3367514 chr3L_3366444_3367007 chr3L_3366200_3366310;chr3L_3367515_3367614 66.32 66.24 66.88 94.58 65.33 68.23 47.62 52.96 62.49 68.75 47.12 67.04 37.40 56.31 56.15 94.27 53.87 49.16 56.92 56.43 59.47 82.87 74.28 68.48 72.17 54.07 66.82 78.75 77.80 86.46 60.41 71.57 72.28 56.95 66.38 69.47 74.35 73.56 68.83 64.36 64.94 60.06 54.96 63.67 66.85 69.16 63.66 69.56 52.62 69.73 65.00 74.06 66.32 66.30 50.40 66.79 65.01 69.53 K alternative_acceptor CG32344,RI_chr3L_321550_321914,I_chr3L_326540_326703,RI_chr3L_326725_326866 chr3L - chr3L_321361_321914;chr3L_321550_321914 chr3L_321364_321914 chr3L_321915_322014;chr3L_321242_321360 85.71 100.00 83.33 61.11 80.00 81.25 66.67 94.44 90.00 NA 88.89 80.00 76.92 84.62 94.74 78.26 NA 88.89 85.71 89.47 100.00 75.00 72.73 86.67 NA 83.33 92.31 75.00 71.43 85.71 84.62 90.91 88.24 80.00 75.00 100.00 77.78 100.00 60.00 78.57 84.21 85.71 100.00 NA 83.33 93.33 91.67 87.50 85.71 88.89 87.50 87.50 78.57 90.00 93.33 88.89 81.48 80.00 K alternative_acceptor CG31033,RI_chr3R_25658089_25658914 chr3R - chr3R_25658095_25658914;chr3R_25658071_25658914 chr3R_25658089_25658914 chr3R_25658915_25659003;chr3R_25657989_25658070 0.00 0.00 2.94 5.26 0.00 0.00 0.00 1.49 0.00 0.00 0.00 2.38 0.00 0.00 0.00 4.17 3.03 2.63 0.00 2.47 5.56 0.00 3.64 0.00 0.00 0.00 0.00 0.00 2.56 2.17 0.00 0.00 4.69 1.47 0.00 0.00 0.00 0.00 1.64 1.33 1.96 2.00 0.00 0.00 0.00 0.00 5.41 1.22 0.00 0.00 1.52 0.00 0.00 0.00 0.00 2.50 4.08 0.93 K intron_retention Rab-RP3,I_chr3L_8290720_8290792 chr3L + chr3L_8290573_8290634 chr3L_8290572_8290573;chr3L_8290634_8290635 chr3L_8290312_8290572;chr3L_8290635_8290719 12.50 10.53 10.53 15.15 15.38 17.65 13.04 12.00 17.95 NA 6.67 18.18 19.05 12.50 16.67 0.00 5.88 13.04 13.33 18.75 6.67 16.67 8.33 15.00 25.00 10.00 7.41 NA 8.00 0.00 10.00 5.00 20.00 9.68 30.77 13.33 20.00 NA 12.50 20.00 5.56 19.05 5.26 7.14 4.76 0.00 20.00 4.00 13.33 6.25 4.76 NA NA NA 10.53 8.33 14.29 13.04 K intron_retention Nc73EF,F_chr3L_16952838_16955936,CE_chr3L_16952842_16955936,I_chr3L_16952985_16955434,I_chr3L_16953768_16954599 chr3L + chr3L_16952985_16953637 chr3L_16952984_16952985;chr3L_16953637_16953638 chr3L_16952885_16952984;chr3L_16953638_16953767 5.00 4.17 4.76 14.29 3.12 8.11 25.00 6.90 7.89 NA 23.53 NA NA 0.00 11.43 8.00 6.67 0.00 7.14 5.48 3.12 0.00 4.05 2.44 5.56 9.09 7.84 3.85 7.14 4.65 6.06 NA 0.00 4.65 0.00 16.67 0.00 11.36 5.56 4.17 NA 5.17 5.00 10.00 NA 0.00 0.00 NA 4.92 6.67 6.56 6.45 0.00 0.00 0.00 0.00 2.56 NA K cassette Dscam,FI_chr2R_3236481_3242386,I_chr2R_3237222_3249222,I_chr2R_3238411_3249222,I_chr2R_3238587_3249222,CEF_chr2R_3238803_3249222,I_chr2R_3239090_3249222,FI_chr2R_3239545_3249222,F_chr2R_3240528_3249222,FI_chr2R_3241198_3249222,FI_chr2R_3242511_3249222,FI_chr2R_3242716_3249222,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3236481_3249222 chr2R_3236481_3243190;chr2R_3243315_3249222 chr2R_3243191_3243314 chr2R_3236381_3236480;chr2R_3249223_3249322 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention stj chr2R + chr2R_9703154_9703707 chr2R_9703153_9703154;chr2R_9703707_9703708 chr2R_9703060_9703153;chr2R_9703708_9703818 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Gprk1,RI_chr2R_357455_358274 chr2R - chr2R_345603_345658 chr2R_345603_345654 chr2R_345558_345602;chr2R_345659_345760 19.70 NA NA 16.67 NA NA 22.73 16.13 23.81 NA NA NA NA NA NA 30.30 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.33 NA NA NA NA NA 15.00 NA 0.00 NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA 31.82 K intron_retention Cep135,RI_chr3L_15119748_15119826,RI_chr3L_15120510_15120565 chr3L + chr3L_15119748_15119820 chr3L_15119747_15119748;chr3L_15119820_15119821 chr3L_15119648_15119747;chr3L_15119821_15119869 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 K intron_retention CREF_chr3R_5589662_5589762,CG8481 chr3R + chr3R_5594561_5594644 chr3R_5594560_5594561;chr3R_5594644_5594645 chr3R_5594544_5594560;chr3R_5594645_5594706 29.02 NA 30.77 NA NA NA NA NA 40.00 NA 42.86 NA NA NA 46.15 25.00 NA NA NA 26.09 NA 6.67 NA NA NA NA NA NA NA 14.29 NA NA NA 35.71 NA NA NA NA NA 43.75 NA 21.43 NA NA 14.29 35.29 NA NA 26.32 NA 41.67 NA NA NA NA 27.27 NA NA K jcn_only_AD sqh,I_chrX_6118043_6119039,I_chrX_6118150_6118725,I_chrX_6118150_6118729,I_chrX_6118150_6118790,I_chrX_6118150_6118800 chrX - chrX_6118150_6118729;chrX_6118150_6118725;chrX_6118150_6119039;chrX_6118150_6118949 chrX_6118150_6119035 chrX_6118050_6118149;chrX_6119040_6119139 1.08 1.04 0.99 0.57 0.63 0.80 0.85 0.61 1.12 0.41 0.62 1.00 1.08 0.88 16.18 0.94 1.42 0.70 0.72 0.84 1.33 1.04 1.52 0.65 0.21 0.55 0.92 1.60 2.79 1.24 1.19 1.91 1.75 1.00 1.65 0.00 1.53 1.51 0.71 1.46 1.29 1.08 1.83 1.23 1.58 0.93 0.70 2.03 1.33 1.15 1.21 0.91 1.39 1.14 1.47 0.81 2.20 1.40 K cassette CLIP-190,I_chr2L_17385896_17394432,RI_chr2L_17386394_17394432,I_chr2L_17394493_17404060,I_chr2L_17401291_17404060,I_chr2L_17401582_17402303 chr2L + chr2L_17385896_17400395;chr2L_17389531_17400395;chr2L_17386394_17400395 chr2L_17386394_17394429,chr2L_17389531_17394429,chr2L_17385896_17394429;chr2L_17394493_17400395 chr2L_17394430_17394492 chr2L_17385796_17385895;chr2L_17400396_17400464 96.88 94.12 100.00 100.00 100.00 100.00 100.00 96.88 98.08 90.00 91.67 97.22 94.74 95.45 100.00 96.88 100.00 93.75 94.74 97.87 86.67 90.91 96.67 95.83 92.86 95.83 96.30 100.00 71.43 100.00 95.00 100.00 94.74 97.14 100.00 93.33 96.00 100.00 92.00 88.24 100.00 97.50 100.00 89.47 90.91 100.00 90.00 95.65 97.73 92.86 100.00 100.00 100.00 100.00 100.00 92.86 100.00 93.33 K intron_retention I_chr3R_1303481_1304607,CG31550 chr3R + chr3R_1314996_1315088 chr3R_1314995_1314996;chr3R_1315088_1315089 chr3R_1314866_1314995;chr3R_1315089_1315211 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 1.43 2.94 0.00 0.48 K intron_retention psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6501632_6502052 chr2R_6501631_6501632;chr2R_6502052_6502053 chr2R_6501448_6501631;chr2R_6502053_6503753 50.00 63.64 54.55 46.67 45.45 NA 28.57 54.55 33.33 45.45 NA 54.17 NA NA 50.00 NA NA NA NA 45.16 NA 54.55 47.06 40.00 41.67 NA NA 55.56 66.67 50.00 NA NA 47.83 63.64 NA 46.15 51.85 50.00 57.14 50.00 NA 40.00 NA 63.64 46.15 77.78 NA 84.62 60.00 36.36 47.06 NA 66.67 NA NA NA NA 45.45 K intron_retention Fcp1 chr2R - chr2R_20456126_20456182 chr2R_20456125_20456126;chr2R_20456182_20456183 chr2R_20455510_20456125;chr2R_20456183_20456392 0.00 0.00 0.00 3.33 0.00 0.00 0.00 2.94 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 NA 0.00 0.00 0.00 0.00 4.26 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 K jcn_only_AD glo,I_chr3R_7644679_7644739,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7644683_7644880;chr3R_7644683_7644739;chr3R_7644683_7644908;chr3R_7644683_7644743 chr3R_7644683_7644932 chr3R_7644583_7644682;chr3R_7644933_7644980 80.44 84.16 78.57 70.00 63.64 80.26 63.50 74.48 81.71 92.31 55.10 83.53 80.28 77.91 75.73 82.41 75.00 NA 75.51 81.89 80.00 80.90 80.66 75.29 75.90 60.71 82.28 91.27 72.50 88.96 76.38 89.08 82.95 78.88 85.26 93.81 85.06 76.32 76.64 82.27 76.40 80.59 77.42 92.14 77.65 83.59 81.44 87.79 75.35 86.21 78.45 75.71 91.06 81.32 70.00 85.60 85.19 89.20 K intron_retention CG17233,I_chr3L_20232803_20232962,RI_chr3L_20232898_20232962 chr3L - chr3L_20231011_20232962 chr3L_20231010_20231011;chr3L_20232962_20232963 chr3L_20229534_20231010;chr3L_20232963_20233016 25.00 NA NA NA NA NA NA 25.00 35.71 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA 5.88 NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754284_15755172;chrX_15754284_15755148;chrX_15754284_15755021;chrX_15754284_15755184;chrX_15754284_15755409;chrX_15754284_15755256;chrX_15754284_15754777;chrX_15754284_15755416 chrX_15754284_15755268 chrX_15754256_15754283 1.85 0.85 1.53 2.76 0.00 1.77 2.01 0.82 1.78 4.48 1.28 0.40 1.61 4.67 1.69 1.86 0.92 2.15 1.29 1.03 1.16 5.33 3.55 1.80 3.06 5.00 0.79 0.00 1.49 3.00 2.25 1.75 4.88 1.54 2.63 6.48 0.00 4.35 2.17 2.04 5.41 1.85 3.91 1.81 2.56 2.61 2.00 0.91 1.00 3.57 0.00 1.36 5.26 2.38 1.29 0.00 2.54 6.17 K jcn_only_AA Pros54 chr3L + chr3L_21530239_21530339 chr3L_21530239_21530310 chr3L_21530106_21530238;chr3L_21530340_21530480 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 K intron_retention CG8485 chr2R - chr2R_10126057_10126134 chr2R_10126056_10126057;chr2R_10126134_10126135 chr2R_10125881_10126056;chr2R_10126135_10126353 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 8.70 0.00 0.00 4.55 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 2.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention l(2)k09913 chr2R + chr2R_18954831_18955154 chr2R_18954830_18954831;chr2R_18955154_18955155 chr2R_18954762_18954830;chr2R_18955155_18955296 14.29 13.16 13.16 28.57 5.71 5.71 19.35 13.56 17.19 11.11 14.29 17.46 12.00 18.52 18.60 18.92 6.25 3.33 9.52 13.95 15.38 25.00 28.57 6.90 36.84 13.16 16.67 12.50 37.04 30.00 14.89 31.82 30.77 14.29 6.90 30.56 7.41 10.53 6.25 14.71 25.00 8.00 12.90 16.22 16.28 20.00 10.53 27.66 14.10 13.64 10.00 29.41 19.05 13.33 13.95 15.00 7.14 25.45 K alternative_donor Pegarn chr3L + chr3L_12783483_12784534;chr3L_12783350_12784534 chr3L_12783425_12784534 chr3L_12784535_12784733;chr3L_12783320_12783349 33.33 NA NA NA NA NA 16.67 33.33 25.00 NA NA NA NA NA NA 54.55 NA NA NA 37.50 NA NA NA NA NA NA NA NA NA NA 33.33 16.67 10.00 NA NA NA NA NA NA NA 37.50 30.00 NA NA NA 33.33 NA 35.71 50.00 NA NA NA NA NA NA NA NA 33.33 K intron_retention l(2)k09913 chr2R + chr2R_18954831_18958129 chr2R_18954830_18954831;chr2R_18958129_18958130 chr2R_18954762_18954830;chr2R_18958130_18958411 37.50 NA NA 17.65 NA NA NA 22.22 56.25 NA 41.67 NA NA NA NA NA NA NA NA NA NA 46.15 NA NA NA NA NA NA NA 33.33 NA NA 50.00 NA NA 70.00 NA NA NA 31.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 K intron_retention Gcn2,Gprk2 chr3R + chr3R_27223962_27224026 chr3R_27223961_27223962;chr3R_27224026_27224027 chr3R_27223389_27223961;chr3R_27224027_27224203 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K cassette CG14425,Sxl,CG14425_Sxl,CEF_chrX_6984538_6992033 chrX - chrX_6982783_6992033 chrX_6982783_6985706;chrX_6986156_6992033 chrX_6985707_6986155 chrX_6982611_6982782;chrX_6992034_6992068 100.00 100.00 100.00 98.33 100.00 100.00 98.31 100.00 98.75 100.00 95.24 100.00 100.00 100.00 97.06 100.00 100.00 96.88 100.00 100.00 100.00 100.00 97.73 96.88 100.00 96.43 100.00 100.00 95.24 100.00 100.00 94.12 100.00 98.63 96.77 100.00 100.00 100.00 100.00 97.92 100.00 98.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention kay,E_chr3R_25616137_25617114 chr3R + chr3R_25616533_25617114 chr3R_25616532_25616533;chr3R_25617114_25617115 chr3R_25616464_25616532;chr3R_25617115_25617214 100.00 88.89 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 95.00 92.31 88.89 96.15 97.06 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 NA 100.00 100.00 92.31 NA 100.00 100.00 K alternative_donor CG3194,CG17266 chr2R - chr2R_2560392_2560453 chr2R_2560392_2560447 chr2R_2559013_2560391;chr2R_2560454_2560850 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 42.86 NA 45.45 NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA 35.71 NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA K alternative_donor CG5001,I_chr2L_1191535_1191648 chr2L + chr2L_1186350_1191402 chr2L_1186453_1191402 chr2L_1191403_1191534;chr2L_1186256_1186349 100.00 100.00 94.44 100.00 100.00 100.00 100.00 96.43 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 93.10 100.00 92.86 100.00 100.00 100.00 91.67 100.00 100.00 92.31 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 94.12 100.00 100.00 100.00 K intron_retention RI_chr4_683177_684480,Slip1,RI_chr4_684369_684451,RI_chr4_684967_689045,I_chr4_685717_686576,RI_chr4_685717_689045,RI_chr4_687548_689045 chr4 + chr4_684369_684480 chr4_684368_684369;chr4_684480_684481 chr4_684313_684368;chr4_684481_684551 0.00 0.00 0.00 2.56 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 1.82 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 14.29 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 4.76 NA NA 0.00 0.00 0.00 NA K alternative_donor CG15072,RI_chr2R_14576128_14579545,I_chr2R_14589693_14590032 chr2R + chr2R_14575874_14579545;chr2R_14576017_14579545;chr2R_14576049_14579545;chr2R_14576056_14579545;chr2R_14576154_14579545 chr2R_14576247_14579545 chr2R_14579546_14579571;chr2R_14575805_14575873 22.22 33.33 40.00 23.08 33.33 16.67 29.41 22.22 20.00 12.50 11.11 20.00 11.76 8.33 12.50 27.78 11.11 14.29 6.67 20.00 25.00 28.57 44.44 20.00 50.00 12.50 14.29 66.67 42.86 14.29 11.11 50.00 45.45 26.67 16.67 12.50 12.50 50.00 20.00 17.65 100.00 35.71 22.22 18.18 0.00 25.00 33.33 55.56 31.25 33.33 50.00 20.00 25.00 0.00 25.00 0.00 25.00 33.33 K intron_retention CG30421 chr2R + chr2R_20640434_20640488 chr2R_20640433_20640434;chr2R_20640488_20640489 chr2R_20640194_20640433;chr2R_20640489_20640758 0.00 0.00 0.00 2.99 0.00 2.70 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 1.75 0.00 0.00 4.41 4.95 0.00 0.00 0.00 0.00 0.00 0.00 3.28 2.33 0.00 0.00 0.00 0.00 1.92 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 2.01 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 1.16 K alternative_acceptor CG14425,Sxl,CG14425_Sxl,CEFI_chrX_6981717_6984166,CEF_chrX_6984538_6992033 chrX - chrX_6979988_6981646 chrX_6980012_6981646 chrX_6981647_6981689;chrX_6979652_6979987 40.00 23.53 28.57 20.00 NA 42.11 21.05 53.33 35.71 NA NA 42.31 20.00 33.33 52.63 42.86 NA 25.00 35.71 28.12 66.67 73.91 35.48 41.67 36.36 53.85 48.28 50.00 35.29 42.86 53.85 NA 42.11 35.71 35.00 40.00 NA 40.00 35.48 56.76 NA 47.06 46.15 52.63 36.36 21.74 42.11 40.00 35.48 43.75 33.33 28.57 30.77 46.15 30.00 25.93 54.55 55.56 K intron_retention Rm62 chr3R - chr3R_1830849_1833758 chr3R_1830848_1830849;chr3R_1833758_1833759 chr3R_1829739_1830848;chr3R_1833759_1834028 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.10 0.00 0.00 0.00 0.18 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17754 chrX + chrX_9145063_9146560 chrX_9145062_9145063;chrX_9146560_9146561 chrX_9144661_9145062;chrX_9146561_9147604 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 8.70 0.00 0.00 0.00 0.00 0.00 3.80 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 8.33 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 K intron_retention CG16971,I_chr3L_225856_225909,I_chr3L_225919_225983,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_225919_225983 chr3L_225918_225919;chr3L_225983_225984 chr3L_225910_225918;chr3L_225984_226009 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.87 100.00 100.00 99.87 100.00 100.00 99.71 100.00 100.00 99.66 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.61 100.00 100.00 100.00 100.00 100.00 99.66 100.00 100.00 100.00 100.00 100.00 99.32 100.00 100.00 99.79 100.00 100.00 100.00 100.00 100.00 100.00 99.79 99.60 100.00 100.00 100.00 100.00 100.00 99.62 K jcn_only_AA Pkc98E chr3R + chr3R_24870160_24870221 chr3R_24870160_24870218 chr3R_24870089_24870159;chr3R_24870222_24871440 77.16 77.78 75.47 89.47 67.35 75.61 72.22 77.19 82.14 75.00 77.14 78.46 91.89 93.18 80.65 85.00 85.00 61.29 75.76 76.85 91.43 72.73 82.50 81.48 74.29 61.54 81.82 73.58 68.29 72.58 74.68 NA 87.76 76.47 84.62 77.50 81.13 73.58 79.71 77.78 NA 79.57 70.00 73.68 80.00 78.57 68.00 76.47 75.76 71.43 74.32 84.44 85.00 NA 62.26 83.33 NA NA K intron_retention Sodh-2 chr3R + chr3R_6703092_6703150 chr3R_6703091_6703092;chr3R_6703150_6703151 chr3R_6702622_6703091;chr3R_6703151_6703246 21.54 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA 55.56 35.71 NA NA NA NA 50.00 23.08 NA NA NA 0.00 NA NA NA 19.05 NA NA 18.75 NA NA NA 20.00 14.29 NA NA NA NA 46.15 45.45 NA NA 33.33 NA NA 18.18 NA K intron_retention grp,I_chr2L_16697644_16698961,R_chr2L_16698072_16698138 chr2L + chr2L_16691193_16691900 chr2L_16691192_16691193;chr2L_16691900_16691901 chr2L_16690902_16691192;chr2L_16691901_16692123 0.00 1.39 0.00 0.00 3.39 0.00 0.00 0.00 1.54 0.00 0.00 1.71 0.00 0.00 0.00 0.00 0.00 0.00 1.85 2.21 0.00 2.60 0.00 2.20 0.00 0.00 0.00 0.00 4.35 1.15 0.00 0.00 0.00 0.00 0.00 1.27 2.04 3.12 0.00 2.63 0.00 1.57 0.00 0.00 0.00 2.00 0.00 0.65 0.00 3.70 0.00 0.00 0.00 0.00 2.60 0.00 3.39 0.97 K alternative_donor bur,I_chr2L_21177679_21177901,I_chr2L_21177679_21178250,I_chr2L_21177960_21179329 chr2L - chr2L_21177679_21179329 chr2L_21177679_21177901 chr2L_21177579_21177678;chr2L_21179330_21179429 2.27 1.54 1.08 4.14 2.04 1.27 2.29 1.15 2.33 0.00 1.75 5.26 2.99 2.60 2.02 2.40 1.52 2.11 2.04 8.00 1.92 25.32 2.73 1.98 2.50 1.09 4.81 4.55 8.06 2.74 2.25 1.64 2.86 2.17 1.41 4.05 2.56 1.47 2.15 3.49 2.38 2.01 1.37 4.17 2.08 3.66 2.00 1.63 1.90 3.51 2.46 2.50 2.27 2.56 2.97 2.27 1.72 0.81 K intron_retention E_chr3R_6935653_7037028,Ugt86Da chr3R + chr3R_6983216_6983799 chr3R_6983215_6983216;chr3R_6983799_6983800 chr3R_6982738_6983215;chr3R_6983800_6984059 0.00 1.33 0.00 1.38 0.00 0.00 2.14 0.61 0.00 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.00 2.00 0.00 1.43 0.00 0.48 0.00 0.78 0.00 0.00 0.68 1.64 0.00 0.00 0.00 0.00 1.39 0.70 1.33 1.35 1.52 0.00 0.76 2.17 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.69 2.13 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 K intron_retention CG14712 chr3R + chr3R_7455443_7455505 chr3R_7455442_7455443;chr3R_7455505_7455506 chr3R_7455040_7455442;chr3R_7455506_7459426 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 4.00 4.35 0.00 0.00 7.69 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 5.08 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 K intron_retention CG3847 chrX + chrX_6241277_6241333 chrX_6241276_6241277;chrX_6241333_6241334 chrX_6241252_6241276;chrX_6241334_6241442 90.70 98.04 89.47 97.06 96.55 89.47 85.29 97.50 89.69 81.58 86.67 96.55 90.70 92.86 88.71 91.95 96.97 90.91 87.50 92.66 89.47 72.34 98.57 85.94 94.74 92.98 88.89 97.30 96.43 87.69 84.85 86.79 85.45 92.21 94.00 98.04 87.76 90.91 85.94 84.78 86.27 93.07 88.24 89.29 79.63 92.68 80.70 90.72 92.17 91.67 94.67 93.48 89.55 87.72 93.67 93.33 85.33 88.35 K intron_retention AP-1sigma,I_chr3R_19786283_19787772 chr3R + chr3R_19785316_19786619 chr3R_19785315_19785316;chr3R_19786619_19786620 chr3R_19785178_19785315;chr3R_19786620_19787186 62.50 55.56 62.00 75.28 60.61 64.71 80.00 62.50 62.50 36.84 38.89 52.81 76.00 73.53 50.88 60.61 69.23 62.22 70.91 72.04 35.85 58.06 66.67 53.85 71.43 64.71 72.34 76.47 72.73 70.37 55.10 47.83 44.00 58.62 70.97 78.79 70.59 51.52 59.46 59.65 58.62 67.09 62.50 52.38 57.14 47.62 65.00 61.54 70.89 70.97 66.04 63.64 55.00 67.57 69.57 55.56 56.41 48.15 K jcn_only_AA CG34408,I_chrX_10120689_10121004 chrX + chrX_10120689_10121435;chrX_10120689_10121381 chrX_10120689_10121444 chrX_10120589_10120688;chrX_10121445_10121990 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 1.85 0.00 0.00 2.04 4.65 NA NA 3.23 0.00 3.03 0.00 0.00 0.00 1.92 0.00 0.00 0.00 1.61 0.00 2.22 1.45 0.00 0.00 NA 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA bon chr3R + chr3R_16436233_16436297 chr3R_16436233_16436294 chr3R_16436109_16436232;chr3R_16436298_16437346 97.92 97.30 91.67 92.86 100.00 100.00 97.37 93.15 99.08 92.31 96.67 100.00 91.89 100.00 97.67 98.28 100.00 97.92 98.21 98.11 100.00 97.22 98.25 93.94 100.00 100.00 94.44 NA 100.00 94.87 97.44 NA 93.22 94.74 100.00 100.00 96.67 100.00 100.00 100.00 86.96 96.51 100.00 100.00 91.30 97.37 100.00 100.00 97.30 100.00 100.00 100.00 NA NA 96.23 92.31 95.45 97.87 K alternative_donor CG18811,I_chr3L_18664773_18665233 chr3L - chr3L_18664773_18665730 chr3L_18664773_18665233 chr3L_18664673_18664772;chr3L_18665731_18666269 0.00 0.00 0.87 0.50 0.00 0.00 0.58 0.00 0.39 1.05 0.00 0.00 0.00 0.89 0.65 0.70 0.00 0.00 0.87 0.00 0.00 0.61 0.51 0.00 0.00 2.04 0.64 0.61 1.06 0.00 0.80 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.79 0.95 0.91 0.00 1.14 0.00 0.91 0.57 1.09 0.00 1.23 0.00 0.00 0.69 0.00 1.08 0.00 K intron_retention chic,I_chr2L_5976783_5978547,RI_chr2L_5976783_5980950,I_chr2L_5978244_5979411,I_chr2L_5979527_5979599,I_chr2L_5979705_5979818,I_chr2L_5979705_5979941,RI_chr2L_5979705_5979951,I_chr2L_5979705_5979953,I_chr2L_5979705_5980025,I_chr2L_5979705_5980213,I_chr2L_5979705_5980370,I_chr2L_5979705_5980558,I_chr2L_5979705_5980632,I_chr2L_5979705_5980639,RI_chr2L_5979705_5980734 chr2L - chr2L_5976783_5979411 chr2L_5976782_5976783;chr2L_5979411_5979412 chr2L_5976683_5976782;chr2L_5979412_5979511 0.04 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.06 0.00 0.00 0.00 0.10 0.00 0.16 0.05 0.15 0.00 0.19 0.03 0.00 0.00 0.05 0.22 0.30 0.48 0.00 0.00 0.00 0.22 0.07 0.06 0.21 0.03 0.04 0.07 0.00 0.06 0.07 0.00 0.00 0.08 0.08 0.00 0.05 0.05 0.04 0.00 0.00 0.00 0.00 0.08 0.12 0.06 0.08 K jcn_only_AA fdl,RI_chr2R_8394261_8394315 chr2R - chr2R_8378211_8394315 chr2R_8394261_8394315 chr2R_8394316_8394415;chr2R_8378028_8378210 0.85 1.92 1.54 0.78 0.00 0.00 0.00 0.00 0.36 2.30 1.75 2.06 0.00 0.00 0.00 0.84 1.09 4.17 0.00 0.45 2.00 0.00 1.61 0.86 2.60 0.85 0.00 0.00 2.41 0.00 1.35 0.00 1.85 0.60 0.00 0.00 1.60 0.00 1.15 1.42 2.78 0.45 1.22 0.00 3.75 2.75 5.06 2.40 1.66 0.00 0.78 0.00 0.00 3.64 0.87 7.95 3.75 0.00 K alternative_acceptor CE_chrX_20766225_20927825,CG1529,RI_chrX_20902550_20902613 chrX - chrX_20902550_20902613 chrX_20902561_20902613 chrX_20902614_20902713;chrX_20902450_20902549 16.33 4.76 8.33 24.00 26.09 12.00 17.24 21.43 16.28 13.04 4.76 17.65 25.00 18.75 10.53 11.11 12.50 19.35 10.53 10.71 4.00 18.87 20.00 12.50 19.05 12.50 9.68 17.65 21.43 15.79 56.67 21.05 13.46 27.27 13.04 16.67 15.52 15.15 17.65 16.33 11.54 14.71 33.33 14.29 8.82 33.33 18.75 21.43 16.28 26.47 18.52 10.53 12.00 19.05 16.67 20.00 9.09 18.18 K jcn_only_AD alpha-Cat,I_chr3L_23319053_23319787,I_chr3L_23319057_23319748,I_chr3L_23319861_23321813,I_chr3L_23327841_23328002 chr3L - chr3L_23319057_23319787 chr3L_23319057_23319748 chr3L_23318989_23319056;chr3L_23319788_23319848 0.53 0.00 0.00 0.53 0.00 2.74 1.63 0.00 0.84 0.00 0.00 0.53 0.00 1.11 0.00 0.94 1.90 0.00 0.00 0.94 3.33 2.33 0.00 0.00 3.03 2.44 2.27 0.00 8.33 0.00 0.68 5.08 0.00 0.96 0.00 2.86 0.00 0.00 0.00 0.00 5.48 0.60 0.00 1.56 2.13 1.00 1.59 0.00 1.04 0.00 0.00 1.02 0.00 1.12 0.70 0.00 0.65 0.00 K intron_retention CG11562 chr2L + chr2L_292661_292716 chr2L_292660_292661;chr2L_292716_292717 chr2L_292325_292660;chr2L_292717_293260 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 NA 2.35 0.00 0.00 0.00 0.00 3.33 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.35 0.00 0.00 0.00 0.00 0.00 K intron_retention KLHL18 chr3R - chr3R_7835866_7835963 chr3R_7835865_7835866;chr3R_7835963_7835964 chr3R_7835012_7835865;chr3R_7835964_7836152 4.04 3.45 0.00 8.00 0.00 3.23 4.35 10.00 4.17 NA 0.00 4.44 0.00 0.00 5.41 10.00 0.00 4.55 0.00 4.48 0.00 0.00 5.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 7.69 4.00 4.65 4.08 6.25 3.70 7.14 0.00 2.22 4.76 6.67 8.16 7.41 6.45 12.50 5.88 0.00 8.33 8.47 5.88 0.00 9.52 4.35 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Orc2 chr3R + chr3R_9790656_9790713 chr3R_9790656_9790704 chr3R_9790643_9790655;chr3R_9790714_9791303 100.00 NA NA 100.00 NA NA NA 100.00 93.33 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 83.33 NA NA 88.89 NA NA NA NA NA NA NA NA NA NA 85.71 NA NA 90.00 NA NA NA NA 93.33 NA NA 100.00 NA 100.00 NA 100.00 NA NA NA NA NA 90.00 NA NA NA K intron_retention CG30122,I_chr2R_14526123_14526189 chr2R - chr2R_14520633_14520696 chr2R_14520632_14520633;chr2R_14520696_14520697 chr2R_14520559_14520632;chr2R_14520697_14520868 0.00 0.00 0.00 1.58 1.60 0.00 0.00 2.86 0.00 2.11 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 1.65 0.79 0.00 0.00 2.43 3.91 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.70 0.48 0.31 0.00 0.00 0.69 0.00 0.00 0.36 0.00 K intron_retention pcs,F_chr2R_10877121_10877189 chr2R + chr2R_10868885_10868994 chr2R_10868884_10868885;chr2R_10868994_10868995 chr2R_10868782_10868884;chr2R_10868995_10869328 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor E(bx),I_chr3L_246324_246699 chr3L - chr3L_241499_241563 chr3L_241502_241563 chr3L_241564_245475;chr3L_241118_241498 96.25 95.00 93.33 92.45 100.00 92.00 98.25 95.38 94.37 100.00 95.65 93.75 97.06 96.43 88.24 96.49 100.00 97.14 90.70 96.25 95.24 96.15 93.75 95.45 100.00 95.45 96.43 100.00 100.00 95.00 90.62 100.00 96.77 96.15 90.00 87.50 100.00 100.00 95.24 97.44 100.00 98.15 96.77 100.00 93.33 95.00 100.00 90.24 96.72 100.00 96.43 95.24 100.00 100.00 92.68 92.31 100.00 95.24 K jcn_only_AD ball chr3R - chr3R_22691957_22692048 chr3R_22691957_22692012 chr3R_22690327_22691956;chr3R_22692049_22692377 100.00 100.00 100.00 100.00 100.00 99.06 100.00 99.42 100.00 100.00 100.00 100.00 99.16 100.00 100.00 100.00 100.00 99.21 99.18 100.00 100.00 100.00 99.25 100.00 100.00 100.00 100.00 99.37 100.00 100.00 99.24 100.00 100.00 99.46 99.29 100.00 97.37 100.00 99.56 100.00 100.00 100.00 100.00 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG15445,REI_chrX_20988432_20988485,RI_chrX_20988432_20988489,REI_chrX_20988439_20988489,I_chrX_20988439_20988552 chrX + chrX_20988432_20988485 chrX_20988439_20988485 chrX_20988486_20988585;chrX_20988339_20988431 55.28 NA 41.67 60.87 50.00 38.46 33.33 65.00 37.93 NA 62.50 46.15 46.15 43.75 53.33 66.67 75.00 61.54 53.33 59.26 41.67 35.00 66.67 66.67 NA 66.67 60.00 50.00 73.08 61.54 63.16 52.63 66.67 59.09 46.15 77.78 54.55 NA 35.71 44.00 66.67 70.59 41.67 72.73 61.11 61.29 40.91 68.18 52.17 47.83 60.00 NA 50.00 55.56 55.00 40.00 56.25 48.15 K intron_retention puc,CG7878,I_chr3R_3952846_3953762 chr3R + chr3R_3934101_3936798 chr3R_3934100_3934101;chr3R_3936798_3936799 chr3R_3933962_3934100;chr3R_3936799_3937023 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.34 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RhoGEF3,I_chr3L_298140_298220 chr3L + chr3L_301109_301162 chr3L_301108_301109;chr3L_301162_301163 chr3L_300901_301108;chr3L_301163_301681 100.00 100.00 98.51 100.00 98.04 100.00 98.72 100.00 99.32 97.37 100.00 99.10 100.00 100.00 98.36 100.00 100.00 100.00 100.00 99.45 98.00 98.39 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 98.89 100.00 98.92 99.01 100.00 99.31 100.00 98.00 100.00 98.48 100.00 98.86 100.00 98.61 95.29 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA capu,I_chr2L_3884519_3902594,I_chr2L_3887800_3888648,I_chr2L_3887896_3888648 chr2L - chr2L_3887800_3893261;chr2L_3889785_3893261 chr2L_3887557_3893261 chr2L_3893262_3893604 95.59 92.65 94.29 97.78 98.25 100.00 91.01 95.33 95.40 97.50 97.18 95.61 96.23 95.59 94.25 95.95 100.00 98.86 95.59 96.49 98.36 90.65 92.78 94.25 85.48 86.79 93.67 91.11 92.06 95.80 97.18 96.36 95.00 98.06 89.83 72.55 100.00 98.00 95.10 96.60 90.70 95.87 100.00 92.00 89.02 97.14 95.59 93.43 95.92 100.00 96.40 100.00 93.85 89.19 95.92 96.77 94.29 95.27 K jcn_only_AA mnb chrX - chrX_17762200_17763014;chrX_17762203_17763014 chrX_17762403_17763014 chrX_17763015_17763849;chrX_17762180_17762199 90.00 NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA 85.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention MED6,CG9471,CG12946,I_chr3R_5599701_5600032,I_chr3R_5609682_5609889 chr3R - chr3R_5593601_5594085 chr3R_5593600_5593601;chr3R_5594085_5594086 chr3R_5593583_5593600;chr3R_5594086_5594178 85.71 NA 90.00 78.95 NA NA 66.67 85.00 78.57 NA NA 83.33 87.50 NA 100.00 NA 76.92 75.00 93.75 73.33 77.78 79.17 NA NA NA 100.00 NA 46.67 80.00 85.71 85.71 91.67 89.47 93.75 NA NA 66.67 NA NA 90.00 71.43 94.74 88.89 63.64 92.86 93.75 NA 95.24 91.30 NA NA NA NA NA 91.67 NA NA 75.00 K intron_retention Nhe3,I_chr2L_6680525_6680670 chr2L - chr2L_6680284_6680345 chr2L_6680283_6680284;chr2L_6680345_6680346 chr2L_6680175_6680283;chr2L_6680346_6680524 0.00 6.67 0.00 2.27 0.00 0.00 1.92 0.00 0.00 2.27 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 2.63 0.00 0.00 0.00 0.00 5.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 2.27 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 K alternative_acceptor RpL8,I_chr3L_2587513_2587750,I_chr3L_2587600_2587750,I_chr3L_2589746_2592161 chr3L + chr3L_2587514_2587717;chr3L_2587514_2587750 chr3L_2587514_2587575 chr3L_2587500_2587513;chr3L_2587751_2587850 0.13 0.12 0.09 0.07 0.03 0.00 0.16 0.12 0.08 0.08 0.03 0.06 0.20 0.10 0.02 0.07 0.06 0.06 0.08 0.07 0.07 0.36 0.19 0.16 0.09 0.11 0.15 0.15 0.22 0.15 0.25 0.13 0.23 0.15 0.29 0.30 0.13 0.13 0.08 0.09 0.30 0.11 0.15 0.22 0.14 0.24 0.20 0.15 0.19 0.19 0.44 0.15 0.16 0.62 0.09 0.11 0.13 0.20 K alternative_donor Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8107426_8107747 chr2L_8107439_8107747 chr2L_8107748_8107847;chr2L_8107326_8107425 100.00 100.00 100.00 100.00 99.56 99.60 99.77 100.00 99.85 99.53 100.00 99.23 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.82 99.55 100.00 100.00 100.00 100.00 100.00 99.53 99.70 100.00 99.51 99.56 100.00 100.00 99.77 100.00 100.00 100.00 100.00 99.78 100.00 100.00 99.82 100.00 100.00 100.00 99.58 100.00 100.00 99.80 99.63 99.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA NtR chr2R + chr2R_18016131_18016219 chr2R_18016131_18016198 chr2R_18015978_18016130;chr2R_18016220_18016386 99.59 100.00 100.00 98.75 96.36 98.31 98.31 98.18 97.41 97.14 100.00 95.45 100.00 100.00 98.61 100.00 97.87 100.00 98.18 100.00 96.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 96.55 97.78 100.00 98.67 98.96 100.00 100.00 100.00 NA 100.00 97.96 94.87 98.36 100.00 100.00 100.00 98.04 100.00 100.00 99.17 100.00 100.00 95.45 96.83 100.00 96.55 97.44 96.81 97.65 K jcn_only_AD CG1600,I_chr2R_3415482_3418090 chr2R - chr2R_3415482_3416695 chr2R_3415482_3416532 chr2R_3415382_3415481;chr2R_3416696_3416766 98.87 95.83 98.26 98.76 100.00 97.00 100.00 98.34 99.62 100.00 100.00 98.04 98.55 97.87 100.00 100.00 100.00 96.90 98.10 99.07 100.00 94.21 99.31 98.98 100.00 98.63 97.06 100.00 98.46 98.68 97.48 100.00 98.95 100.00 98.94 100.00 97.90 100.00 99.25 100.00 95.95 98.87 97.80 98.61 98.63 100.00 97.99 98.45 98.99 98.48 100.00 98.75 98.23 100.00 100.00 98.98 98.74 98.77 K intron_retention tan,R_chr3L_6048520_6048578,R_chr3L_6048608_6048676 chr3L + chr3L_6048764_6048816 chr3L_6048763_6048764;chr3L_6048816_6048817 chr3L_6048696_6048763;chr3L_6048817_6048925 0.00 0.00 0.00 0.00 11.11 NA 0.00 0.00 2.70 NA 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 7.69 8.82 0.00 0.00 0.00 3.45 5.88 NA NA 0.00 NA NA 3.23 NA NA 0.00 0.00 0.00 0.00 NA 6.82 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 N jcn_only_AA CG31431 chr3R + chr3R_17697863_17697938;chr3R_17697863_17698131 chr3R_17697863_17697989 chr3R_17697704_17697862;chr3R_17698132_17698247 0.00 0.00 0.00 0.00 0.00 0.00 21.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6674 chr3L - chr3L_9964703_9964763 chr3L_9964702_9964703;chr3L_9964763_9964764 chr3L_9964213_9964702;chr3L_9964764_9965180 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA 5.00 NA 5.56 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 K intron_retention I_chr2R_5999081_6000140,E_chr2R_6001157_6001630,CG11866 chr2R + chr2R_6006048_6006983 chr2R_6006047_6006048;chr2R_6006983_6006984 chr2R_6005537_6006047;chr2R_6006984_6007232 0.00 0.00 0.00 1.54 0.00 0.00 3.57 0.00 4.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Tor chr2L + chr2L_13005998_13006352 chr2L_13005998_13006349 chr2L_13005431_13005997;chr2L_13006353_13006363 19.38 NA 16.67 45.45 NA NA 15.38 18.75 20.00 NA NA 13.33 NA NA 7.14 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA 30.77 NA 23.08 NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA K alternative_acceptor Ipk1 chr2R + chr2R_16766404_16766475 chr2R_16766404_16766472 chr2R_16766183_16766403;chr2R_16766476_16766616 53.94 NA 36.36 NA NA NA NA 50.00 NA NA NA 60.00 NA NA 54.55 45.45 NA NA NA 66.67 NA NA NA 46.15 NA NA 58.33 NA 63.64 NA 57.14 NA NA 33.33 NA 53.33 55.56 NA 38.46 45.00 47.06 60.00 NA NA 58.33 62.50 66.67 60.00 NA 50.00 55.56 NA 55.56 50.00 NA 46.15 47.06 53.33 K jcn_only_AD CG7048,I_chr3R_18313003_18313231,R_chr3R_18313119_18313234,I_chr3R_18313402_18313502 chr3R + chr3R_18313003_18313231 chr3R_18313115_18313231 chr3R_18313232_18313331;chr3R_18312937_18313002 99.26 99.53 98.86 98.18 100.00 100.00 98.40 99.56 97.61 97.47 97.40 100.00 100.00 98.72 99.33 98.87 98.99 100.00 98.08 99.29 97.70 80.19 98.71 100.00 99.25 100.00 100.00 99.18 99.26 99.25 98.00 97.93 98.85 99.49 99.41 100.00 98.67 99.47 99.18 97.53 100.00 99.03 100.00 100.00 98.32 100.00 99.64 97.76 99.61 99.24 99.62 99.26 100.00 100.00 98.76 100.00 99.26 99.59 K jcn_only_AA CG4699 chr3R + chr3R_11624133_11624445 chr3R_11624133_11624442 chr3R_11623809_11624132;chr3R_11624446_11624758 77.78 NA NA NA 75.00 NA NA NA 77.78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.48 NA 85.71 NA NA NA 76.74 NA NA NA 80.77 NA NA NA NA NA NA NA NA NA NA 75.76 NA 80.00 NA NA NA NA NA NA NA 66.67 K alternative_donor Pka-C1,I_chr2L_9685203_9685594 chr2L - chr2L_9685203_9696190 chr2L_9685203_9685594 chr2L_9685103_9685202;chr2L_9696191_9698233 0.69 1.92 1.23 1.61 0.00 1.20 1.75 1.50 0.69 0.00 1.82 1.44 1.43 1.12 1.19 0.58 1.45 0.00 0.91 0.32 0.00 1.64 1.37 2.27 0.00 1.33 1.59 6.25 0.00 0.00 0.66 0.00 0.00 1.11 0.00 2.13 0.00 0.00 0.00 0.94 0.00 0.61 1.59 1.72 0.00 0.00 0.00 1.28 1.18 0.00 1.54 0.00 0.00 0.00 0.91 0.00 0.00 0.00 K intron_retention CG10080 chr2R + chr2R_17518321_17518377 chr2R_17518320_17518321;chr2R_17518377_17518378 chr2R_17518123_17518320;chr2R_17518378_17518801 2.00 2.25 0.88 2.48 2.13 0.00 2.56 2.34 2.45 0.00 0.00 3.12 2.63 5.26 0.00 2.80 0.00 0.00 3.17 2.25 0.00 0.00 2.22 0.00 3.03 3.30 4.39 6.84 1.55 1.91 1.05 2.89 2.61 0.00 3.33 2.08 3.30 0.00 0.83 1.73 2.63 1.04 0.00 0.78 2.20 2.17 0.00 0.95 1.68 1.54 2.00 2.63 1.85 2.27 1.80 0.93 2.67 0.92 K intron_retention drosha chr2R + chr2R_3821543_3821600 chr2R_3821542_3821543;chr2R_3821600_3821601 chr2R_3819931_3821542;chr2R_3821601_3823925 0.00 NA NA 0.00 NA NA 6.67 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA tay,I_chrX_15779977_15780538,RI_chrX_15780874_15781045,I_chrX_15783766_15785978 chrX - chrX_15777398_15777465 chrX_15777401_15777465 chrX_15777466_15777513;chrX_15777227_15777397 83.74 NA 74.19 90.62 NA 80.95 78.57 87.50 86.67 NA 85.00 73.58 86.36 87.50 82.05 82.86 NA NA NA 82.50 NA 77.14 87.50 81.82 75.00 95.83 NA NA NA 80.00 84.62 NA 82.61 86.36 NA NA 76.19 NA NA 95.24 NA 93.33 NA NA NA NA NA NA 80.56 NA 95.83 NA NA NA 91.43 NA NA NA K jcn_only_AA CG1516,cbx,I_chr2R_5752557_5752628,RI_chr2R_5752988_5757801 chr2R - chr2R_5752557_5752628 chr2R_5752575_5752628 chr2R_5752629_5752728;chr2R_5752457_5752556 100.00 NA NA 95.56 NA 95.45 97.22 97.06 100.00 NA NA 96.43 NA NA 100.00 100.00 NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 97.30 NA NA NA 96.15 NA NA 100.00 95.45 100.00 NA NA NA 100.00 NA 95.83 95.83 K alternative_acceptor Socs16D chrX - chrX_17717337_17717410 chrX_17717352_17717410 chrX_17717411_17719514;chrX_17717224_17717336 2.44 2.00 3.45 2.70 3.12 4.55 0.00 2.44 1.35 2.50 3.85 3.57 3.12 0.00 0.00 5.13 4.00 0.00 3.23 1.43 0.00 3.70 4.17 1.75 2.70 0.00 1.85 4.76 3.28 3.70 4.08 0.00 0.00 2.00 0.00 2.70 0.00 1.59 1.41 1.15 0.00 1.39 3.85 3.92 0.00 3.28 0.00 2.33 3.85 0.00 1.64 3.03 4.35 3.23 0.00 0.00 3.45 3.33 K jcn_only_AA Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21124374_21124442 chr2L_21124374_21124439 chr2L_21124317_21124373;chr2L_21124443_21124521 72.97 73.85 67.61 69.85 78.12 72.73 69.81 71.32 71.43 76.00 88.24 71.56 78.46 70.59 70.37 71.57 77.61 82.43 72.29 77.07 79.03 81.18 67.06 69.01 79.69 76.25 72.22 83.67 78.26 73.53 72.73 77.78 70.00 75.00 73.81 75.29 72.00 72.88 71.57 78.30 73.33 70.34 66.67 77.22 70.00 80.00 83.33 72.97 72.48 80.49 81.40 58.70 72.73 78.05 78.12 72.34 68.89 65.52 K alternative_acceptor scramb1,I_chr3L_10217325_10217959 chr3L - chr3L_10217325_10217959 chr3L_10217338_10217959 chr3L_10217960_10218059;chr3L_10217225_10217324 100.00 100.00 100.00 100.00 97.22 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 97.37 100.00 96.30 95.45 100.00 97.06 94.59 95.35 95.83 98.04 97.78 100.00 96.15 100.00 96.43 93.62 97.78 100.00 100.00 94.44 100.00 100.00 96.43 96.15 100.00 100.00 96.15 95.65 100.00 100.00 100.00 100.00 95.24 97.78 100.00 K jcn_only_AD CG12734,I_chr3L_3183812_3183932,I_chr3L_3184645_3185360 chr3L + chr3L_3183998_3184251 chr3L_3184038_3184251 chr3L_3184252_3184644;chr3L_3183933_3183997 96.30 90.32 NA NA NA NA NA NA 96.30 NA NA NA NA NA NA NA NA NA NA 95.65 NA 86.96 93.33 100.00 NA NA 92.86 NA NA NA NA NA NA NA NA NA 87.88 96.67 97.67 NA NA 96.30 NA 100.00 NA NA NA NA NA 95.24 96.30 NA NA NA NA 100.00 NA NA K intron_retention Su(var)3-9,I_chr3R_11088444_11088789,I_chr3R_11088444_11088825 chr3R - chr3R_11088444_11089003 chr3R_11088443_11088444;chr3R_11089003_11089004 chr3R_11088344_11088443;chr3R_11089004_11089196 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.50 0.00 0.00 0.74 0.00 0.00 0.49 0.00 0.45 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 1.35 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14225,I_chrX_19569702_19569879,I_chrX_19573364_19573474 chrX - chrX_19569689_19569836 chrX_19569688_19569689;chrX_19569836_19569837 chrX_19569602_19569688;chrX_19569837_19569924 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA N alternative_last_exon Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2611234_2611315;chr3L_2608645_2611315 chr3L_2611160_2611315 chr3L_2608438_2608644 chr3L_2609737_2611159 chr3L_2611316_2611367 99.70 98.76 98.67 94.93 96.43 98.50 97.94 97.01 98.34 99.57 99.83 95.97 99.86 98.38 98.57 99.85 99.82 99.79 99.81 98.37 99.83 99.19 99.07 99.88 99.80 99.86 97.43 99.46 99.71 99.82 99.70 99.71 98.93 98.78 99.69 97.99 99.92 97.98 99.91 98.07 99.65 98.52 99.82 99.81 99.77 99.85 99.78 99.84 98.90 96.54 97.65 99.73 99.88 99.80 99.89 99.81 99.85 99.83 K intron_retention CG5525,E_chr2L_12690983_12691912,CG5780 chr2L - chr2L_12691304_12691362 chr2L_12691303_12691304;chr2L_12691362_12691363 chr2L_12690619_12691303;chr2L_12691363_12691502 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.47 0.10 0.00 0.29 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.58 0.00 0.00 0.00 0.46 0.56 0.91 0.00 0.00 0.21 0.00 0.00 0.17 0.00 0.70 0.00 0.00 0.00 0.45 0.00 0.24 0.00 0.00 0.00 0.52 0.00 0.00 0.37 0.23 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 K cassette Hsc70-4,EI_chr3R_11068693_11068772 chr3R + chr3R_11068522_11070081 chr3R_11068522_11068631;chr3R_11068693_11070081 chr3R_11068632_11068692 chr3R_11068453_11068521;chr3R_11070082_11072336 0.09 0.11 0.09 0.02 0.16 0.05 0.16 0.08 0.08 0.19 0.07 0.11 0.18 0.10 0.04 0.09 0.07 0.06 0.09 0.08 0.07 0.02 0.07 0.11 0.14 0.05 0.09 0.22 0.30 0.10 0.07 0.22 0.05 0.06 0.03 0.00 0.11 0.12 0.05 0.20 0.24 0.11 0.06 0.09 0.16 0.16 0.07 0.16 0.06 0.05 0.06 0.11 0.06 0.04 0.09 0.11 0.05 0.08 K alternative_donor CG31531,I_chr3R_485548_485960,I_chr3R_485608_485960,noncoding_14584,I_chr3R_486122_506500,I_chr3R_496573_505950,I_chr3R_523978_526879 chr3R + chr3R_485616_485960;chr3R_485399_485960 chr3R_485608_485960 chr3R_485961_486060;chr3R_485382_485398 42.86 42.86 42.86 26.67 27.78 40.00 50.00 32.35 37.50 56.25 54.55 51.16 38.89 42.86 60.87 34.38 47.62 NA 38.46 44.12 NA 42.86 53.12 39.13 42.86 44.44 62.07 26.32 42.11 40.00 44.44 22.22 28.57 39.29 35.00 26.32 60.00 57.14 62.96 60.61 25.00 27.03 41.18 62.07 NA 23.08 45.45 46.43 33.33 43.75 29.41 45.00 NA NA 44.44 NA 50.00 25.00 N alternative_acceptor CG11897 chr3R + chr3R_24989884_24989968 chr3R_24989884_24989946 chr3R_24989616_24989883;chr3R_24989969_24990652 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Rm62,RI_chr3R_1834029_1834277 chr3R - chr3R_1834032_1834272 chr3R_1834031_1834032;chr3R_1834272_1834273 chr3R_1833759_1834031;chr3R_1834273_1834276 90.91 93.33 NA 89.47 100.00 100.00 97.83 84.21 95.00 78.57 100.00 100.00 NA NA 90.00 90.00 NA 70.00 100.00 94.74 100.00 NA 100.00 92.86 100.00 97.06 94.74 62.86 97.06 91.67 90.00 NA 51.85 76.92 88.89 90.48 100.00 100.00 100.00 32.79 91.30 89.47 90.91 51.61 87.50 90.91 88.89 55.56 77.78 NA 100.00 87.50 84.62 100.00 90.91 88.89 90.00 72.73 K intron_retention CG15740 chrX - chrX_11739906_11740078 chrX_11739905_11739906;chrX_11740078_11740079 chrX_11739288_11739905;chrX_11740079_11740119 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG42271,RI_chrX_14127297_14127804 chrX - chrX_14124662_14124724 chrX_14124661_14124662;chrX_14124724_14124725 chrX_14123332_14124661;chrX_14124725_14125274 0.00 0.00 0.00 30.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 3.85 NA 2.86 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K jcn_only_AD CG14777,CG14778 chrX + chrX_1360963_1361835 chrX_1360967_1361835 chrX_1361836_1361997;chrX_1360741_1360962 1.42 3.85 5.13 0.00 0.00 2.27 3.57 6.12 1.18 0.00 NA 3.95 0.00 4.35 4.55 NA 0.00 3.85 0.00 1.45 0.00 NA 2.99 1.11 4.08 0.00 0.00 3.70 0.00 5.77 0.00 0.00 0.00 1.39 5.00 0.00 3.53 2.74 2.65 0.00 3.45 0.96 6.25 7.41 1.35 3.03 2.78 0.00 1.79 0.00 2.60 0.00 0.00 1.15 0.00 2.82 1.52 0.00 K jcn_only_AD Aats-pro chr3L - chr3L_2651281_2651341 chr3L_2651281_2651333 chr3L_2651213_2651280;chr3L_2651342_2651593 12.50 0.00 4.00 0.00 3.45 4.55 17.24 2.70 6.56 NA NA 6.00 NA 16.67 5.13 NA 12.50 NA NA 8.70 NA 0.00 22.45 17.78 8.33 NA 15.22 0.00 37.50 30.00 56.00 4.76 10.00 16.67 13.64 3.33 27.50 11.11 17.50 16.95 30.43 14.29 NA 0.00 11.76 12.50 20.00 15.56 7.84 18.18 16.00 15.00 12.12 NA 10.00 13.79 1.85 20.69 K jcn_only_AA Dgp-1,I_chr2R_14058825_14059758,I_chr2R_14058951_14059942,I_chr2R_14058954_14059942 chr2R - chr2R_14058954_14059942;chr2R_14058951_14059942 chr2R_14058825_14059942 chr2R_14059943_14060042 98.63 100.00 97.50 100.00 95.65 96.67 100.00 100.00 100.00 NA 95.45 98.48 96.15 100.00 94.59 96.61 100.00 96.88 100.00 97.62 96.30 93.94 96.67 96.00 95.24 96.77 95.00 100.00 98.63 100.00 100.00 100.00 96.77 100.00 100.00 93.75 100.00 100.00 100.00 100.00 93.88 100.00 96.67 100.00 100.00 100.00 96.77 97.67 100.00 96.43 100.00 NA 100.00 100.00 100.00 96.77 98.04 98.61 K intron_retention CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21281338_21281395 chr2L_21281337_21281338;chr2L_21281395_21281396 chr2L_21281132_21281337;chr2L_21281396_21281884 0.00 0.00 0.00 11.76 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA mip120,I_chr2R_9394299_9394351,RI_chr2R_9394299_9395019 chr2R + chr2R_9394299_9395019;chr2R_9394299_9397293 chr2R_9394299_9394351 chr2R_9394199_9394298 4.17 0.00 6.67 8.00 NA 4.55 NA 3.33 0.00 NA NA 10.00 NA 0.00 0.00 8.33 NA 4.17 0.00 7.69 0.00 NA 2.38 13.51 4.35 NA NA NA NA NA 0.00 NA 3.85 0.00 NA 8.70 0.00 8.00 2.08 12.24 NA 8.57 NA 0.00 14.29 4.55 NA 3.33 0.00 5.00 7.89 NA NA NA 4.17 0.00 NA NA K intron_retention Pi3K92E,I_chr3R_16459436_16459551,I_chr3R_16459436_16459848 chr3R - chr3R_16459436_16460267 chr3R_16459435_16459436;chr3R_16460267_16460268 chr3R_16459336_16459435;chr3R_16460268_16460435 0.00 0.00 0.00 5.41 NA 0.00 0.00 4.88 2.00 0.00 NA 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 3.12 0.00 6.25 0.00 10.00 13.33 0.00 6.67 NA 0.00 2.94 0.00 NA 3.33 4.76 0.00 3.39 NA 2.22 9.52 2.22 NA 0.00 NA 0.00 3.77 NA 6.25 0.00 NA NA 0.00 NA 0.00 14.29 K intron_retention CG9904 chrX + chrX_2513962_2514026 chrX_2513961_2513962;chrX_2514026_2514027 chrX_2513833_2513961;chrX_2514027_2514626 100.00 100.00 NA 100.00 NA NA NA 93.33 94.44 NA NA 100.00 NA NA 88.89 90.91 NA NA NA 100.00 NA NA 90.00 100.00 NA NA 100.00 NA NA NA 92.31 NA 100.00 100.00 NA NA NA 100.00 91.67 88.89 NA 100.00 NA NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA K jcn_only_AA CG4230,I_chr2L_5096701_5097032,RI_chr2L_5097236_5097536 chr2L + chr2L_5096701_5097035 chr2L_5096701_5097032 chr2L_5096601_5096700;chr2L_5097036_5097132 4.00 NA 0.00 NA NA NA NA 4.00 0.00 NA NA 3.57 NA NA NA NA NA NA NA 3.12 NA NA 4.76 5.00 NA NA NA NA NA NA 3.57 NA NA NA NA NA 5.00 NA NA 0.00 NA 4.00 NA NA NA NA NA NA 4.35 NA 9.09 NA NA NA 4.35 NA 0.00 NA K alternative_donor alpha-Man-I,I_chrX_10218352_10219759,I_chrX_10218390_10219759 chrX - chrX_10218352_10219846;chrX_10218352_10219918;chrX_10218352_10219759;chrX_10218352_10219665;chrX_10218352_10219823;chrX_10218352_10219708 chrX_10218352_10219816 chrX_10218290_10218351;chrX_10219919_10219979 16.67 14.29 16.67 23.08 16.67 11.11 20.00 29.41 10.53 0.00 20.00 20.00 NA 22.22 25.00 14.29 16.67 16.67 12.50 21.43 16.67 0.00 12.50 14.29 14.29 14.29 12.50 NA NA 22.22 14.29 NA 14.29 50.00 NA 16.67 16.67 0.00 NA 25.00 16.67 15.38 12.50 16.67 NA 20.00 NA 22.22 20.00 33.33 20.00 12.50 20.00 NA 11.11 0.00 0.00 33.33 K intron_retention RhoGDI,noncoding_13630 chr3L + chr3L_19924478_19925081 chr3L_19924477_19924478;chr3L_19925081_19925082 chr3L_19924363_19924477;chr3L_19925082_19925432 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.32 0.44 0.00 0.00 0.18 0.00 0.31 0.28 0.00 0.00 0.00 0.26 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.77 0.00 0.00 0.57 0.00 0.00 0.38 0.00 0.00 0.27 0.00 0.32 0.48 0.00 0.16 0.00 0.00 0.00 0.00 0.41 0.00 0.16 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Mlc-c,C_chrX_5514320_5515557 chrX - chrX_5514320_5516284 chrX_5514319_5514320;chrX_5516284_5516285 chrX_5514220_5514319;chrX_5516285_5516312 3.17 3.17 1.45 4.07 4.92 5.88 4.73 2.89 4.35 6.25 7.81 3.57 2.86 3.92 3.68 0.67 2.99 5.22 1.83 2.46 8.18 6.25 5.38 3.25 4.62 3.60 4.65 14.00 4.08 0.00 1.55 8.93 1.89 4.00 2.80 1.03 2.60 0.00 0.00 2.17 9.09 2.75 3.85 3.39 2.47 1.38 3.60 4.88 2.53 2.41 2.48 2.30 1.80 0.79 3.33 1.89 3.10 0.00 K intron_retention CG17184 chr3R - chr3R_7059293_7059643 chr3R_7059292_7059293;chr3R_7059643_7059644 chr3R_7059124_7059292;chr3R_7059644_7060166 2.13 2.75 2.13 3.81 3.57 0.00 4.55 6.06 3.88 0.00 2.60 3.42 0.00 3.39 4.44 2.30 2.90 1.28 4.00 1.50 2.27 5.26 0.00 1.85 0.00 3.28 0.00 0.00 3.45 1.69 10.42 3.39 0.00 4.88 0.00 0.00 2.26 1.02 0.00 5.95 0.00 3.25 5.17 0.00 0.00 1.05 0.00 0.00 4.67 0.00 1.64 3.64 1.77 0.00 4.60 0.99 1.40 4.48 K alternative_donor AIF chr2L + chr2L_2152466_2152662;chr2L_2152271_2152662 chr2L_2152463_2152662 chr2L_2152663_2152944;chr2L_2152233_2152270 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.38 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG9302,I_chr2L_13377616_13377699 chr2L - chr2L_13376976_13377038 chr2L_13376991_13377038 chr2L_13377039_13377615;chr2L_13376485_13376975 0.43 0.00 0.81 0.27 0.55 0.93 1.17 0.57 0.42 0.64 1.05 0.43 0.00 0.42 0.62 0.32 0.63 0.00 1.16 0.84 0.00 0.50 0.40 0.66 1.52 0.75 0.39 0.00 0.36 1.23 0.37 0.50 1.68 0.54 0.00 0.00 0.00 0.00 0.68 0.00 1.89 0.44 0.00 0.35 0.00 0.26 0.00 0.00 0.76 0.31 0.73 0.55 0.00 0.48 0.38 0.35 0.99 0.72 K intron_retention l(3)82Fd,I_chr3R_1122358_1125191,I_chr3R_1131693_1133665,I_chr3R_1147660_1148709 chr3R - chr3R_1122358_1123923 chr3R_1122357_1122358;chr3R_1123923_1123924 chr3R_1122258_1122357;chr3R_1123924_1124211 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 NA 10.20 0.00 0.00 0.00 4.55 0.00 NA 9.09 3.57 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 4.44 0.00 1.85 0.00 0.00 0.00 2.94 0.00 0.00 1.47 0.00 2.27 NA 0.00 0.00 0.00 0.00 NA 0.00 K intron_retention CG17665 chr2R - chr2R_130205_130265 chr2R_130204_130205;chr2R_130265_130266 chr2R_129941_130204;chr2R_130266_130352 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 6.82 NA 0.00 3.64 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 5.88 NA NA NA 0.00 NA 3.85 3.85 NA NA NA 0.00 0.00 1.59 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 K jcn_only_AA l(2)gd1,Gr32a chr2L + chr2L_11109508_11110158 chr2L_11109508_11110104 chr2L_11109356_11109507;chr2L_11110159_11110249 8.33 8.06 12.96 11.50 16.22 8.51 12.64 10.89 9.43 18.52 14.00 6.12 2.27 13.79 11.54 18.60 9.43 8.33 13.11 2.70 15.38 2.94 5.83 6.85 5.56 28.30 2.94 0.00 11.90 7.78 18.18 11.11 3.85 6.38 11.32 25.53 10.64 11.32 4.65 7.69 13.24 7.32 4.65 8.33 5.56 8.60 5.63 4.08 8.33 7.29 8.99 2.78 6.45 8.06 5.56 10.00 2.80 3.06 K intron_retention msk,I_chr3L_8109906_8110404 chr3L + chr3L_8112643_8112704 chr3L_8112642_8112643;chr3L_8112704_8112705 chr3L_8111845_8112642;chr3L_8112705_8112928 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG1667,RI_chr2R_5731409_5731653,I_chr2R_5732410_5732504 chr2R + chr2R_5731907_5731965 chr2R_5731914_5731965 chr2R_5731966_5732034;chr2R_5731846_5731906 98.56 96.55 98.70 98.57 100.00 99.13 100.00 98.84 99.15 97.92 96.84 98.95 100.00 100.00 100.00 98.70 100.00 99.01 98.28 98.56 98.85 94.85 96.84 98.96 100.00 98.97 98.20 100.00 93.94 98.00 91.72 100.00 97.14 99.37 96.61 95.24 100.00 93.44 98.23 100.00 100.00 97.97 100.00 99.11 96.83 97.78 96.51 97.62 99.45 95.12 98.37 100.00 97.87 97.10 98.29 97.92 96.94 97.78 K intron_retention CG7458 chr3L + chr3L_21948354_21948413 chr3L_21948353_21948354;chr3L_21948413_21948414 chr3L_21948244_21948353;chr3L_21948414_21948649 100.00 NA NA NA NA NA NA 100.00 100.00 100.00 NA 92.86 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA NA NA NA NA 100.00 NA 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 100.00 96.15 K alternative_donor Aats-ala chr2L - chr2L_8381453_8381679 chr2L_8381453_8381510 chr2L_8380448_8381452;chr2L_8381680_8381706 2.38 3.61 1.89 3.15 2.80 1.20 6.80 2.29 2.38 2.00 1.87 3.68 2.31 2.88 1.46 1.74 5.05 4.05 1.01 1.78 1.63 3.05 7.27 7.69 3.26 2.76 2.90 2.79 2.30 1.60 2.35 2.26 1.43 2.13 8.70 4.21 2.46 5.00 2.80 1.54 1.20 2.32 2.26 4.39 0.56 1.73 4.08 1.24 2.31 3.92 6.82 2.35 1.41 3.57 2.43 4.00 5.00 0.93 K intron_retention CG12219 chrX - chrX_6193558_6193640 chrX_6193557_6193558;chrX_6193640_6193641 chrX_6193063_6193557;chrX_6193641_6193830 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 2.08 0.00 0.00 2.56 9.09 0.00 0.00 0.00 2.38 0.00 3.57 0.00 0.00 7.41 8.33 6.52 11.36 6.06 4.35 0.00 0.00 0.00 2.94 0.00 0.00 2.08 0.00 1.85 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 3.57 0.00 7.69 0.00 0.00 0.00 3.57 K jcn_only_AA Spred,I_chr2R_10655876_10656868 chr2R - chr2R_10650514_10651335 chr2R_10650580_10651335 chr2R_10651336_10651504;chr2R_10650450_10650513 90.14 89.69 98.08 86.42 94.34 95.00 98.48 90.14 88.97 93.22 92.45 88.54 94.12 90.91 97.06 85.11 82.14 93.10 85.71 89.34 97.83 88.31 87.50 94.87 90.14 90.00 91.30 42.86 88.68 95.16 92.54 89.36 87.72 96.34 88.00 71.43 92.94 89.02 94.94 84.85 80.00 96.61 95.83 90.00 80.00 93.02 83.82 88.73 97.70 68.97 92.47 78.79 91.38 85.29 92.65 95.95 90.91 88.89 K intron_retention CG7970 chr3L + chr3L_1653255_1653316 chr3L_1653254_1653255;chr3L_1653316_1653317 chr3L_1653142_1653254;chr3L_1653317_1653575 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.34 1.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 K intron_retention CG9911 chrX - chrX_16188347_16188420 chrX_16188346_16188347;chrX_16188420_16188421 chrX_16188148_16188346;chrX_16188421_16188687 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 N intron_retention alc,I_chr2R_5023501_5023700 chr2R - chr2R_5023501_5025265 chr2R_5023500_5023501;chr2R_5025265_5025266 chr2R_5023401_5023500;chr2R_5025266_5025455 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 69.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Qm,RI_chr3L_23084218_23087783,REI_chr3L_23086979_23087779,RE_chr3L_23086979_23087782,I_chr3L_23087712_23087783,E_chr3L_23087825_23087922,RI_chr3L_23087947_23088093 chr3L - chr3L_23086979_23087783 chr3L_23086978_23086979;chr3L_23087783_23087784 chr3L_23086879_23086978;chr3L_23087784_23087824 0.06 0.00 0.06 0.18 0.00 0.07 0.08 0.08 0.08 0.11 0.08 0.09 0.09 0.12 0.02 0.10 0.00 0.03 0.05 0.02 0.00 0.09 0.06 0.00 0.00 0.00 0.08 0.30 0.23 0.08 0.03 0.06 0.10 0.07 0.04 0.17 0.00 0.00 0.03 0.04 0.08 0.03 0.03 0.00 0.06 0.06 0.00 0.02 0.08 0.10 0.05 0.00 0.06 0.05 0.05 0.06 0.08 0.03 K jcn_only_AD CG33298 chr2L + chr2L_9495712_9503592;chr2L_9495657_9503592 chr2L_9496256_9503592 chr2L_9503593_9504813;chr2L_9495488_9495656 93.75 95.45 87.10 96.61 82.61 NA 97.96 95.95 93.33 NA 91.30 100.00 86.11 94.59 93.75 94.87 92.68 100.00 93.18 96.77 78.26 81.82 NA NA NA NA NA NA NA NA 100.00 NA NA 89.04 100.00 NA NA NA NA 85.71 NA 90.62 97.30 NA NA NA NA NA 95.52 NA NA NA NA NA 89.74 NA NA NA K cassette Rab11,I_chr3R_16937578_16940474,I_chr3R_16937759_16939667,RE_chr3R_16939259_16939667 chr3R + chr3R_16937578_16940474 chr3R_16937578_16939667;chr3R_16939790_16940474 chr3R_16939668_16939789 chr3R_16937478_16937577;chr3R_16940475_16940574 99.87 100.00 100.00 100.00 99.71 99.72 99.81 100.00 99.88 100.00 99.72 100.00 99.69 100.00 99.78 100.00 99.70 99.74 100.00 99.87 99.72 97.90 99.39 99.77 99.24 99.57 100.00 100.00 96.47 99.67 99.76 100.00 100.00 100.00 100.00 99.64 100.00 100.00 99.77 99.80 99.71 99.87 100.00 99.70 100.00 100.00 100.00 99.28 100.00 99.71 100.00 100.00 99.59 100.00 99.80 99.72 100.00 100.00 K alternative_acceptor stck,I_chr3R_4184313_4184380,I_chr3R_4184660_4184730 chr3R + chr3R_4184313_4184380 chr3R_4184313_4184370 chr3R_4184213_4184312;chr3R_4184381_4184446 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.57 99.06 100.00 100.00 99.05 96.88 100.00 98.08 100.00 97.37 100.00 100.00 100.00 100.00 98.41 100.00 98.63 100.00 100.00 98.68 100.00 97.96 100.00 98.15 97.06 100.00 100.00 100.00 100.00 98.97 100.00 100.00 100.00 100.00 99.02 97.22 100.00 100.00 98.61 100.00 100.00 98.97 98.33 100.00 97.30 100.00 100.00 100.00 98.36 99.12 100.00 K intron_retention c11_1 chrX - chrX_9170301_9170361 chrX_9170300_9170301;chrX_9170361_9170362 chrX_9169612_9170300;chrX_9170362_9170464 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.45 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention cora,I_chr2R_15125277_15130573,I_chr2R_15125940_15130208,I_chr2R_15129291_15129988 chr2R + chr2R_15129901_15130208 chr2R_15129900_15129901;chr2R_15130208_15130209 chr2R_15129679_15129900;chr2R_15130209_15130308 53.33 NA NA NA NA NA 20.00 NA 53.33 NA NA 50.00 35.71 NA NA NA NA NA NA NA NA NA NA NA NA 31.25 87.50 54.55 NA NA NA NA NA 70.00 NA NA NA NA NA 41.67 NA 63.64 NA NA 38.46 NA NA NA 63.64 NA 63.64 NA NA NA NA NA NA NA K alternative_acceptor CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15765557_15765895 chrX_15765557_15765891 chrX_15765408_15765556;chrX_15765896_15766002 90.91 90.00 NA 80.00 NA NA 90.91 92.31 91.67 NA NA 90.91 100.00 NA NA 75.00 NA NA 100.00 88.89 NA NA NA NA NA NA NA NA NA NA NA NA NA 91.67 NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA 93.75 NA 88.89 NA NA NA 90.91 NA NA NA K intron_retention CG4360 chr3R - chr3R_16152521_16152594 chr3R_16152520_16152521;chr3R_16152594_16152595 chr3R_16152038_16152520;chr3R_16152595_16153716 2.41 1.03 0.87 5.73 3.11 1.55 2.00 3.23 2.22 1.38 1.38 2.21 0.00 1.29 2.48 2.65 0.00 2.14 2.12 2.36 0.61 4.04 2.11 2.25 3.98 2.49 4.30 7.73 13.48 3.05 2.42 1.30 3.37 1.56 2.48 0.60 2.59 1.57 2.69 2.59 3.33 1.18 2.41 2.30 1.85 2.60 3.21 3.45 2.22 3.03 2.95 3.61 1.53 3.31 1.33 2.56 3.54 1.00 K jcn_only_AA CG2224 chr3R - chr3R_26283127_26283184 chr3R_26283140_26283184 chr3R_26283185_26283500;chr3R_26283014_26283126 0.00 0.00 0.00 1.85 0.00 0.00 1.92 0.00 3.45 NA 0.00 1.96 0.00 7.41 0.00 0.00 3.03 2.78 0.00 0.00 0.00 0.00 1.75 2.17 7.41 2.86 3.33 NA 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 2.56 0.00 3.85 0.00 0.00 0.00 0.00 0.00 5.13 0.00 0.00 0.00 0.00 2.70 8.57 0.00 0.00 K intron_retention PGRP-SA,CG11695 chrX + chrX_11456491_11456551 chrX_11456490_11456491;chrX_11456551_11456552 chrX_11456372_11456490;chrX_11456552_11456815 0.46 0.43 0.00 1.44 0.00 0.59 1.41 0.61 0.40 0.00 0.31 0.40 0.49 0.37 0.26 0.94 0.00 1.39 0.66 1.14 0.00 2.57 0.51 0.48 2.34 1.99 1.31 0.38 5.17 0.00 0.85 0.00 0.36 0.69 0.54 1.21 0.44 0.00 0.00 0.54 1.26 0.75 0.00 0.00 0.43 1.29 0.43 1.10 0.39 0.46 0.42 0.00 0.00 0.65 0.33 0.66 0.47 0.00 N jcn_only_AD Inos,I_chr2R_3344353_3345211,noncoding_4874 chr2R - chr2R_3344353_3345211;chr2R_3344353_3346212;chr2R_3344353_3344799 chr2R_3344353_3346113 chr2R_3344253_3344352;chr2R_3346213_3346215 99.20 99.22 99.84 99.26 99.49 99.61 98.93 99.81 98.90 99.94 98.51 98.33 99.72 100.00 98.78 98.43 99.89 98.45 100.00 99.14 98.88 96.06 99.26 99.02 99.28 99.85 99.64 99.08 98.09 98.66 98.14 98.53 96.75 98.78 99.74 99.76 99.83 99.32 99.02 98.75 99.71 99.20 98.16 99.78 99.07 98.90 99.66 99.95 98.81 99.44 98.98 99.81 99.73 99.10 98.64 99.02 99.43 99.48 K alternative_acceptor cmet chr2L - chr2L_11261449_11261510 chr2L_11261455_11261510 chr2L_11261511_11262004;chr2L_11260848_11261448 100.00 94.74 93.75 100.00 100.00 100.00 100.00 97.14 100.00 NA 93.75 96.55 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 92.86 NA 93.33 100.00 100.00 94.74 95.24 NA NA 88.89 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 92.86 95.83 NA 93.94 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 N intron_retention RI_chrX_22094836_22142377,noncoding_25169 chrX + chrX_22120111_22120222 chrX_22120110_22120111;chrX_22120222_22120223 chrX_22120097_22120110;chrX_22120223_22120518 8.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.11 K alternative_acceptor Trap1 chr2R - chr2R_2521435_2521515;chr2R_2521454_2521515 chr2R_2521438_2521515 chr2R_2521516_2521564;chr2R_2521152_2521434 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD CG8678,RI_chr2L_21213167_21213227 chr2L - chr2L_21214648_21220259 chr2L_21214648_21215016 chr2L_21213917_21214647;chr2L_21220260_21220516 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 40.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA K jcn_only_AA rdgA chrX + chrX_8910362_8911891;chrX_8910362_8911876 chrX_8910362_8911894 chrX_8910158_8910361;chrX_8911895_8912021 90.00 NA NA NA NA 90.00 NA NA 90.00 NA NA 86.96 NA NA NA NA NA NA NA 93.33 NA 95.24 95.00 NA NA NA NA NA NA NA NA NA NA 89.66 NA NA 96.43 NA 83.33 NA NA 73.08 NA NA NA NA NA NA 92.86 NA NA NA NA NA 90.00 NA NA NA K alternative_acceptor CG32582,I_chrX_15730402_15730457 chrX + chrX_15730431_15730557 chrX_15730431_15730489 chrX_15730315_15730430;chrX_15730558_15730707 29.70 NA 44.44 44.44 NA NA 54.55 46.67 45.00 NA 27.27 50.00 NA 36.36 27.27 45.45 33.33 27.27 35.71 35.71 NA NA 17.65 33.33 NA NA 20.00 NA NA NA 46.15 NA NA 37.50 NA 50.00 23.08 29.41 NA 21.05 30.00 29.17 44.44 13.64 25.00 14.29 27.27 NA 31.03 28.57 36.84 18.18 21.43 18.75 47.06 26.32 20.00 16.67 K intron_retention I_chrX_7993650_7995126,Gclc chrX - chrX_7999928_8009449 chrX_7999927_7999928;chrX_8009449_8009450 chrX_7999301_7999927;chrX_8009450_8009613 10.73 15.66 25.32 12.31 21.74 20.97 13.60 16.56 25.67 6.12 8.82 16.80 12.31 21.21 12.24 20.66 20.83 10.00 16.50 10.73 8.22 12.87 14.88 5.43 7.89 11.36 6.50 9.82 9.17 7.58 16.03 0.00 8.76 24.03 17.74 3.97 8.94 10.98 5.43 7.97 2.70 20.26 17.57 7.18 0.00 1.12 7.50 8.57 18.88 4.17 12.17 11.32 2.86 4.00 21.43 5.45 4.35 3.37 K alternative_acceptor cals,I_chr4_1136706_1138476,RI_chr4_1137077_1137140,I_chr4_1139644_1142084,RI_chr4_1141233_1142084 chr4 - chr4_1137077_1137140 chr4_1137083_1137140 chr4_1137141_1137224;chr4_1136977_1137076 100.00 100.00 100.00 97.37 90.00 100.00 100.00 97.87 96.23 NA 100.00 100.00 94.74 100.00 91.67 98.15 100.00 93.75 100.00 96.88 100.00 100.00 95.00 94.12 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA 97.50 94.44 NA 100.00 100.00 100.00 94.44 NA 100.00 100.00 96.00 NA 96.30 100.00 NA 100.00 95.65 96.67 100.00 87.50 100.00 93.33 94.12 100.00 90.91 K alternative_acceptor R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8088517_8089393 chr2L_8088517_8089184 chr2L_8088459_8088516;chr2L_8089394_8089493 82.57 69.23 91.67 70.00 NA 83.33 90.24 87.88 90.91 77.78 85.71 85.19 74.07 83.33 75.00 92.45 87.50 80.00 83.33 94.44 83.33 92.31 70.00 71.43 91.67 76.47 64.29 76.47 88.89 54.55 100.00 71.43 81.82 77.42 77.78 92.31 50.00 66.67 80.00 94.12 87.50 75.86 76.92 60.00 83.33 83.33 55.56 83.33 91.18 60.00 78.57 90.00 NA NA 65.00 83.33 50.00 92.31 K intron_retention Neb-cGP,CG2889 chrX + chrX_10354882_10354952 chrX_10354881_10354882;chrX_10354952_10354953 chrX_10354790_10354881;chrX_10354953_10355029 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.79 1.89 0.00 3.19 1.23 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 1.08 0.00 5.71 3.67 5.45 26.79 0.00 0.00 0.00 0.00 0.00 2.38 6.90 0.57 0.00 1.22 1.72 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 1.54 0.00 0.00 4.88 0.00 1.80 0.00 2.21 0.00 K jcn_only_AA CG32809,I_chrX_1576815_1577129,I_chrX_1577031_1577129,CEI_chrX_1579569_1579679,RI_chrX_1585391_1586471,I_chrX_1589508_1589564 chrX - chrX_1571099_1571167 chrX_1571112_1571167 chrX_1571168_1571350;chrX_1570956_1571098 4.55 2.50 4.55 6.90 NA 4.55 8.33 0.00 5.00 4.76 0.00 2.44 NA 10.00 0.00 NA 4.17 NA 7.41 1.47 NA 4.44 6.38 4.55 2.50 4.55 4.00 0.00 7.27 4.82 3.23 5.66 3.54 5.41 4.65 5.45 3.57 16.13 3.90 4.76 4.65 3.17 NA 2.94 2.90 1.54 5.56 3.55 4.88 NA 5.88 NA NA 7.14 7.69 5.88 NA 6.45 K jcn_only_AD CG17082,I_chr2R_632143_635290,R_chr2R_642176_644740,I_chr2R_644094_644145,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_631984_636726;chr2R_632083_636726;chr2R_631907_636726;chr2R_632143_636726 chr2R_631971_636726 chr2R_636727_636891;chr2R_631902_631906 2.44 NA NA 4.26 NA NA 7.89 0.00 2.44 NA NA 4.76 NA 0.00 NA 2.78 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD Rga,I_chr3R_1436346_1436552,I_chr3R_1436346_1437602,I_chr3R_1436346_1437897,I_chr3R_1437726_1437791,Spec2 chr3R - chr3R_1436346_1436552;chr3R_1436346_1437791 chr3R_1436346_1437897 chr3R_1436246_1436345;chr3R_1437898_1437963 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.94 0.00 1.11 1.08 0.93 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Anxb11,I_chrX_16314152_16314405,I_chrX_16314152_16315813 chrX - chrX_16313804_16314082 chrX_16313803_16313804;chrX_16314082_16314083 chrX_16313237_16313803;chrX_16314083_16314148 4.29 NA 0.00 14.29 NA NA NA 0.00 0.00 NA NA 0.00 NA 7.69 NA 15.38 NA 0.00 NA 8.33 NA 1.43 NA NA NA NA NA NA 15.38 0.00 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 12.50 NA 11.11 NA 12.50 NA 21.43 0.00 7.14 NA NA NA NA NA NA NA 8.33 K cassette scrib,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22416440_22424298 chr3R_22416440_22423368;chr3R_22423846_22424298 chr3R_22423369_22423845 chr3R_22416340_22416439;chr3R_22424299_22424434 55.91 46.67 62.50 44.44 41.67 57.14 56.25 47.62 55.00 60.00 NA 52.63 71.43 42.86 58.33 87.50 80.00 44.44 66.67 56.52 10.00 41.86 58.33 64.71 60.00 50.00 66.67 57.14 62.50 55.56 60.00 35.29 56.25 53.85 50.00 81.08 43.33 29.41 57.14 67.86 72.73 70.00 50.00 59.09 46.88 56.52 53.33 53.66 64.71 38.46 58.82 55.56 47.83 50.00 61.54 50.00 36.36 42.11 K alternative_donor akirin,I_chr3L_7363173_7364806,I_chr3L_7363177_7364806,I_chr3L_7363177_7364831,I_chr3L_7363211_7364831,I_chr3L_7363731_7364806,I_chr3L_7364126_7364806,RI_chr3L_7364737_7364806 chr3L + chr3L_7363177_7364831;chr3L_7363211_7364831 chr3L_7363169_7364831 chr3L_7364832_7364906;chr3L_7363111_7363168 13.04 12.63 6.58 3.62 10.13 8.20 4.79 8.33 10.63 19.15 5.80 12.88 13.86 19.51 9.57 21.19 9.38 13.64 11.76 9.30 11.25 23.44 17.28 16.67 14.29 7.23 10.43 16.09 10.00 30.49 17.17 30.00 57.33 8.82 14.29 8.22 13.04 14.86 18.75 19.83 12.82 12.50 9.86 5.92 12.20 18.92 13.89 26.67 16.86 28.57 12.96 12.20 17.24 14.08 8.26 15.19 15.38 24.00 K intron_retention pps chr3R + chr3R_8242311_8242369 chr3R_8242310_8242311;chr3R_8242369_8242370 chr3R_8240593_8242310;chr3R_8242370_8242851 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.51 0.00 0.00 0.00 6.67 0.87 0.00 1.32 0.00 0.00 0.00 0.00 2.17 1.23 2.88 0.00 0.00 0.00 2.29 0.00 0.00 0.00 0.67 2.56 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.57 1.25 0.00 1.15 0.00 0.00 0.00 0.00 0.00 2.38 0.00 K intron_retention CG7029,CG7023,F_chr3R_18601121_18601300 chr3R + chr3R_18592449_18600470 chr3R_18592448_18592449;chr3R_18600470_18600471 chr3R_18592333_18592448;chr3R_18600471_18602057 40.45 33.33 36.84 47.06 NA 43.75 82.35 47.83 58.62 NA 15.38 38.46 15.38 53.33 40.00 38.46 53.85 NA 40.91 52.00 NA NA 22.22 NA NA 80.00 NA NA NA NA 41.18 NA 41.67 43.33 77.78 NA NA NA NA 26.09 NA 42.31 35.29 NA NA 26.67 NA 25.00 48.15 NA 25.00 NA NA NA 25.00 NA 7.69 16.67 K jcn_only_AA spri,I_chrX_10404621_10469422,I_chrX_10413811_10440661,I_chrX_10417598_10440661 chrX - chrX_10438538_10440661 chrX_10438626_10440661 chrX_10440662_10440749;chrX_10438419_10438537 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention svr,RI_chrX_421417_421591 chrX + chrX_390582_390645 chrX_390581_390582;chrX_390645_390646 chrX_390575_390581;chrX_390646_391422 100.00 NA 100.00 100.00 NA 88.89 100.00 100.00 96.77 NA 88.89 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 91.67 NA 100.00 100.00 NA 100.00 100.00 NA NA NA 90.91 NA NA 96.30 NA 100.00 NA NA NA 94.12 NA 96.15 100.00 100.00 NA NA NA NA 96.43 NA 100.00 100.00 NA NA 90.91 NA 100.00 NA K alternative_acceptor Gpdh chr2L + chr2L_5947333_5948406 chr2L_5947333_5947856 chr2L_5947240_5947332;chr2L_5948407_5948574 100.00 100.00 100.00 100.00 100.00 100.00 80.00 95.24 100.00 100.00 NA 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 91.67 50.00 NA 88.89 100.00 NA 80.00 100.00 NA NA 100.00 100.00 100.00 83.33 100.00 100.00 NA NA 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 87.50 95.24 100.00 100.00 75.00 83.33 100.00 100.00 87.50 100.00 88.89 K intron_retention CG10365,I_chr3R_19554176_19554388 chr3R + chr3R_19556450_19556515 chr3R_19556449_19556450;chr3R_19556515_19556516 chr3R_19556371_19556449;chr3R_19556516_19557227 0.00 0.00 2.44 0.00 1.56 3.08 1.59 0.00 0.00 1.72 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 2.86 5.49 0.00 1.32 0.92 0.00 0.00 0.00 1.05 0.00 0.00 0.68 0.00 0.00 1.01 1.19 0.89 0.00 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 K intron_retention mth chr3L - chr3L_344040_344106 chr3L_344039_344040;chr3L_344106_344107 chr3L_344021_344039;chr3L_344107_344301 15.38 NA NA NA NA NA NA 30.77 NA NA 7.14 NA NA NA NA NA NA 0.00 NA 33.33 11.11 9.09 NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA 38.46 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.38 NA K intron_retention Axn,I_chr3R_25849563_25849626 chr3R + chr3R_25858750_25858806 chr3R_25858749_25858750;chr3R_25858806_25858807 chr3R_25858653_25858749;chr3R_25858807_25858938 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.99 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 K intron_retention tral,I_chr3L_12512171_12512251 chr3L + chr3L_12511768_12511829 chr3L_12511767_12511768;chr3L_12511829_12511830 chr3L_12511538_12511767;chr3L_12511830_12512170 0.00 0.00 0.00 0.00 NA 5.88 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 6.67 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 13.79 13.79 10.81 6.25 0.00 0.00 0.00 0.00 3.57 0.00 1.96 0.00 2.17 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Jhebp29,RI_chr2R_20857941_20857992,RI_chr2R_20857941_20858127 chr2R + chr2R_20857941_20858127 chr2R_20857940_20857941;chr2R_20858127_20858128 chr2R_20857841_20857940;chr2R_20858128_20858227 91.23 96.43 92.86 98.25 93.94 94.29 86.79 86.57 91.14 94.12 93.94 93.44 87.10 88.57 95.00 92.31 96.55 89.47 89.47 90.70 90.91 61.90 88.89 97.44 83.33 91.11 92.11 95.00 56.76 95.24 93.02 92.59 86.05 92.16 87.50 80.77 96.97 78.95 81.25 92.73 89.74 94.03 96.00 93.33 97.14 90.91 92.86 87.50 91.23 75.68 87.50 100.00 86.67 84.38 91.49 87.50 91.07 95.31 N mutually_exclusive unc-13,I_chr4_897821_902468,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_897821_902468,chr4_902576_903586;chr4_897821_903242,chr4_903350_903586 chr4_897821_899476,chr4_899619_903586 chr4_902469_902575;chr4_903243_903349 chr4_899477_899618 chr4_897721_897820;chr4_903587_903686 53.85 42.86 36.36 57.89 66.67 50.00 18.75 36.36 40.62 83.33 NA 42.86 72.73 53.85 50.00 64.29 42.86 60.00 63.64 16.67 42.86 14.29 69.23 60.00 54.55 78.95 50.00 40.00 50.00 63.64 27.59 50.00 81.25 54.55 72.22 86.21 NA 57.14 75.00 50.00 63.64 76.19 60.00 53.85 50.00 60.00 50.00 46.67 72.97 33.33 73.33 50.00 50.00 NA 40.00 NA 42.86 76.92 K jcn_only_AD CG4365 chr3L + chr3L_20791960_20792242;chr3L_20792089_20792242;chr3L_20791819_20792242;chr3L_20792100_20792242 chr3L_20792077_20792242 chr3L_20792243_20793181;chr3L_20791802_20791818 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 1.72 0.00 K intron_retention Psi,I_chr2R_12751549_12752073,I_chr2R_12753387_12753659 chr2R - chr2R_12751557_12752073 chr2R_12751556_12751557;chr2R_12752073_12752074 chr2R_12750179_12751556;chr2R_12752074_12752173 66.67 NA 66.67 53.12 50.00 76.92 66.67 56.76 75.00 NA 43.75 62.50 75.00 68.42 65.00 73.53 56.25 66.67 63.64 64.58 53.85 NA 75.00 73.33 81.82 64.71 60.00 72.73 70.00 56.52 66.67 52.63 43.33 61.76 73.33 26.67 81.82 63.64 70.00 75.00 69.57 62.96 57.14 66.67 69.23 55.56 91.67 65.85 75.00 NA 70.00 77.78 66.67 66.67 57.14 52.38 75.00 56.76 K intron_retention CG3209,I_chr2R_19957751_19959513,RI_chr2R_19957766_19960227,I_chr2R_19959163_19959513 chr2R + chr2R_19957766_19960227 chr2R_19957765_19957766;chr2R_19960227_19960228 chr2R_19957666_19957765;chr2R_19960228_19960327 4.94 4.44 4.59 7.50 1.72 5.62 4.66 3.17 4.45 4.94 8.33 5.68 2.94 6.52 3.42 5.95 4.60 6.76 2.88 7.73 11.76 2.94 5.00 5.07 6.86 4.72 6.21 5.11 2.92 7.48 6.74 2.15 5.39 6.55 4.26 5.41 4.02 6.34 4.12 6.54 5.61 4.35 7.32 4.10 3.20 5.47 3.05 10.20 5.70 3.88 4.49 4.82 3.96 2.08 5.52 1.65 2.22 5.88 K cassette CG10353,I_chrX_11775936_11778830,I_chrX_11778617_11778830,RI_chrX_11780885_11780988 chrX - chrX_11777655_11780988;chrX_11775936_11780988 chrX_11777655_11778830,chrX_11775936_11778830;chrX_11779315_11780988 chrX_11778831_11779314 chrX_11775836_11775935;chrX_11780989_11781085 14.81 12.31 19.44 12.50 10.64 22.22 21.15 16.28 13.27 15.91 13.79 15.71 6.67 22.58 15.00 23.21 16.67 32.35 15.38 29.87 9.52 25.00 8.25 16.00 14.29 14.29 11.11 9.76 8.82 9.86 14.81 10.71 10.24 15.25 13.95 15.62 10.14 11.11 11.90 10.45 12.68 18.28 21.05 5.88 17.54 14.77 21.28 13.77 19.67 17.31 13.70 11.54 20.31 12.50 16.28 15.69 25.35 26.19 K alternative_acceptor eIF-1A chr3R + chr3R_14100479_14100547;chr3R_14100479_14100566 chr3R_14100479_14100588 chr3R_14100417_14100478;chr3R_14100589_14100702 98.91 98.90 99.33 99.20 98.76 99.01 99.26 99.07 99.38 98.15 99.04 99.13 98.78 100.00 99.45 99.33 99.28 99.15 99.26 99.35 99.01 97.18 98.64 98.60 97.92 97.40 98.91 97.06 96.13 97.78 99.53 98.08 100.00 98.75 100.00 99.02 97.64 98.74 99.45 98.43 98.55 99.20 98.83 96.38 99.40 97.47 99.30 96.49 99.29 98.89 98.99 97.79 98.67 98.25 98.89 99.26 98.94 93.94 K jcn_only_AD l(1)G0289,I_chrX_10254197_10254506,I_chrX_10254197_10259575 chrX - chrX_10254197_10260156 chrX_10254197_10254506 chrX_10254097_10254196;chrX_10260157_10260387 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.38 0.21 0.00 0.00 0.44 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.46 0.27 0.39 0.29 0.85 0.00 0.78 0.84 0.56 0.29 0.82 0.00 0.00 0.00 0.00 0.24 0.23 0.34 0.00 0.00 0.63 0.20 0.00 0.54 0.43 0.00 0.32 0.19 0.00 0.00 0.00 0.41 0.27 0.00 0.32 0.00 0.00 0.29 K intron_retention CG13933,I_chr3L_1773911_1773984 chr3L - chr3L_1772319_1772487 chr3L_1772318_1772319;chr3L_1772487_1772488 chr3L_1772022_1772318;chr3L_1772488_1773369 90.91 83.33 93.33 96.88 100.00 72.73 78.26 100.00 88.89 NA NA 78.26 80.00 100.00 90.91 85.71 91.67 88.24 90.00 96.55 60.00 90.91 90.91 100.00 93.33 90.91 87.50 61.54 90.91 86.67 85.71 88.89 85.71 91.67 81.82 90.91 91.67 NA 92.31 94.12 92.31 96.00 100.00 70.00 100.00 87.50 93.75 91.67 93.10 81.25 91.67 NA NA 93.33 88.24 87.50 100.00 71.43 K multi_cassette CG11266,RI_chr2L_7033019_7033182,RI_chr2L_7033019_7034180,RI_chr2L_7033019_7034764,I_chr2L_7034274_7034764,I_chr2L_7034274_7035406,RI_chr2L_7034911_7035074,I_chr2L_7051093_7051366 chr2L + chr2L_7033019_7035406 chr2L_7033019_7034483;chr2L_7034694_7034764;chr2L_7034913_7035406 chr2L_7034484_7034693;chr2L_7034765_7034912 chr2L_7032919_7033018;chr2L_7035407_7035506 8.45 4.88 14.81 4.65 8.33 15.00 14.29 23.08 10.00 4.44 10.53 20.63 28.00 26.67 10.00 28.57 21.05 3.57 20.83 8.11 10.53 5.63 9.76 6.82 2.22 6.06 12.82 0.00 1.33 2.63 22.58 6.12 1.22 13.51 9.52 NA 3.92 6.25 8.89 7.00 2.44 10.00 21.05 10.81 1.00 3.75 4.65 3.20 15.69 5.56 10.81 8.57 2.22 6.25 20.00 12.82 5.71 3.08 K intron_retention CG8920 chr2R + chr2R_16208194_16209182 chr2R_16208193_16208194;chr2R_16209182_16209183 chr2R_16208052_16208193;chr2R_16209183_16209405 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 6.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention Rpn6,I_chr2R_10639546_10639733 chr2R - chr2R_10638222_10638287 chr2R_10638221_10638222;chr2R_10638287_10638288 chr2R_10637656_10638221;chr2R_10638288_10638500 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.66 0.00 0.00 0.00 0.00 0.42 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.39 K intron_retention RpS13,RI_chr2L_8364316_8364396,I_chr2L_8364316_8364541 chr2L - chr2L_8364316_8364540 chr2L_8364315_8364316;chr2L_8364540_8364541 chr2L_8364216_8364315;chr2L_8364541_8364766 0.08 0.08 0.08 0.06 0.00 0.05 0.06 0.05 0.05 0.00 0.02 0.06 0.03 0.07 0.04 0.06 0.06 0.06 0.07 0.02 0.09 0.41 0.00 0.74 1.08 0.03 2.41 0.51 0.24 0.25 0.12 0.03 0.08 0.06 0.54 0.37 0.54 0.00 0.40 0.10 0.10 0.06 0.02 0.13 0.12 0.14 0.00 0.07 0.11 0.96 1.19 0.50 0.09 1.35 0.06 0.65 0.54 0.04 K alternative_donor su(f),I_chrXHet_77570_78035 chrXHet + chrXHet_77736_78035;chrXHet_77832_78035 chrXHet_77570_78035 chrXHet_78036_78135;chrXHet_77470_77569 1.41 0.00 1.00 3.42 2.82 1.23 0.00 1.38 1.27 1.82 1.41 0.00 0.00 2.82 0.94 2.06 1.61 1.41 2.30 2.65 1.43 14.81 0.88 2.68 1.37 1.05 0.00 1.96 1.59 2.44 5.45 3.90 1.08 0.77 1.52 1.27 0.00 3.57 1.45 6.52 1.32 2.31 1.39 0.00 1.14 2.02 1.18 3.31 0.65 3.33 0.92 1.69 1.54 2.82 0.88 1.16 1.00 2.80 K intron_retention CG9855,RI_chr3R_222522_222581,RI_chr3R_222525_222604,I_chr3R_223384_223429 chr3R - chr3R_222525_222604 chr3R_222524_222525;chr3R_222604_222605 chr3R_222457_222524;chr3R_222605_222650 100.00 88.89 100.00 94.44 100.00 92.86 100.00 100.00 95.83 NA 100.00 100.00 NA 100.00 92.31 92.31 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 NA NA 91.67 100.00 94.74 100.00 100.00 94.44 96.88 92.86 87.50 100.00 91.67 87.50 100.00 97.37 100.00 93.33 100.00 100.00 100.00 100.00 90.91 97.83 95.00 100.00 100.00 NA 92.86 100.00 100.00 90.00 100.00 97.83 K cassette ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13416358_13418551 chr2R_13416358_13416591;chr2R_13416697_13418551 chr2R_13416592_13416696 chr2R_13416127_13416357;chr2R_13418552_13418652 100.00 100.00 100.00 99.01 100.00 100.00 98.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.53 100.00 100.00 100.00 99.25 100.00 100.00 100.00 100.00 100.00 100.00 96.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention RI_chrX_7172561_7252693,CG1677,I_chrX_7178792_7252693,unc-119,I_chrX_7183298_7183371,RI_chrX_7183298_7184274 chrX - chrX_7183298_7183538 chrX_7183297_7183298;chrX_7183538_7183539 chrX_7183198_7183297;chrX_7183539_7183711 8.33 NA 12.50 12.50 NA 6.25 5.26 11.54 9.38 NA NA 4.17 14.29 NA NA 13.64 NA NA 17.39 16.67 NA 0.00 8.00 11.76 NA 0.00 5.00 NA NA NA 12.50 NA NA 8.33 NA 11.76 NA 0.00 5.88 8.33 NA 10.53 NA NA 14.29 7.69 8.33 NA 12.00 NA 0.00 14.29 NA 0.00 6.25 0.00 4.35 NA K intron_retention TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748981_19749783 chr2R_19748980_19748981;chr2R_19749783_19749784 chr2R_19748884_19748980;chr2R_19749784_19750104 27.69 20.00 26.92 28.57 25.00 23.81 31.82 25.45 27.78 NA 17.65 23.21 29.17 15.38 27.59 28.95 20.83 37.50 14.29 32.14 19.23 42.31 20.00 26.09 48.15 18.75 30.30 25.00 65.22 42.86 20.00 42.11 57.14 28.57 37.50 44.00 28.57 25.00 30.56 24.24 48.00 21.57 7.69 30.00 31.25 37.50 23.08 40.00 33.33 29.63 23.08 20.00 38.46 8.33 27.59 25.00 15.38 39.47 N cassette trol,I_chrX_2391522_2395659 chrX - chrX_2415822_2417437 chrX_2415822_2416256;chrX_2416455_2417437 chrX_2416257_2416454 chrX_2415567_2415821;chrX_2417438_2417562 100.00 100.00 100.00 35.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD fat2 chr3L + chr3L_20016740_20017255 chr3L_20017083_20017255 chr3L_20017256_20017387 0.00 3.33 4.55 4.17 0.00 0.00 0.97 0.00 0.00 NA 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 2.50 NA 0.00 2.63 4.35 2.86 0.00 0.00 2.63 0.00 0.00 3.85 0.00 0.00 NA NA 0.00 0.00 3.49 0.00 2.04 0.00 1.59 0.00 2.13 0.00 1.82 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Bap55,EDTP chr2R - chr2R_13318068_13318146 chr2R_13318067_13318068;chr2R_13318146_13318147 chr2R_13317225_13318067;chr2R_13318147_13318448 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor bel,I_chr3R_4483665_4483736,I_chr3R_4484110_4485922 chr3R - chr3R_4483566_4483736 chr3R_4483665_4483736 chr3R_4483737_4483836;chr3R_4483565_4483565 0.51 0.00 0.00 1.00 0.00 0.00 5.88 1.65 0.97 0.00 0.00 1.28 3.85 0.00 0.00 2.00 0.00 2.50 0.00 0.82 0.00 0.88 1.15 0.45 2.58 0.00 1.55 1.88 0.32 0.70 0.00 0.00 0.20 0.67 0.35 1.04 0.43 0.53 0.71 0.55 0.36 0.75 2.94 0.56 0.23 0.53 1.13 0.24 0.79 0.79 1.76 0.00 0.00 0.00 0.00 0.00 0.00 0.51 K alternative_donor RpL27A,E_chr2L_4457411_4457977,I_chr2L_4458058_4458120 chr2L - chr2L_4458058_4458288;chr2L_4458058_4458274;chr2L_4458058_4458140 chr2L_4458058_4458162 chr2L_4457978_4458057;chr2L_4458289_4458357 8.76 10.06 1.69 0.78 2.85 1.77 5.88 0.86 4.28 14.73 2.52 5.70 2.89 8.45 1.13 4.07 1.70 5.48 1.32 3.41 2.93 7.73 20.47 15.11 16.67 1.83 22.77 17.11 35.67 18.33 15.30 7.99 10.98 1.68 18.06 23.71 23.16 22.31 22.73 26.63 18.18 1.70 1.24 20.16 5.85 15.35 17.11 15.77 3.85 16.06 23.81 12.84 10.61 31.68 1.57 21.29 8.65 8.76 K jcn_only_AD I_chr2R_9844856_9845327,CG13349,RI_chr2R_9846641_9846709 chr2R - chr2R_9847615_9847732;chr2R_9847615_9847823 chr2R_9847615_9847752 chr2R_9847073_9847614;chr2R_9847824_9847834 0.00 0.00 0.90 0.00 1.05 0.00 0.56 0.47 0.31 0.00 1.14 0.49 0.90 0.96 0.71 1.12 0.00 0.00 0.75 0.78 0.76 0.00 0.61 1.92 1.03 2.40 0.00 0.00 0.00 0.00 0.84 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 1.72 0.00 1.19 0.00 0.00 0.00 0.41 0.98 0.72 0.00 0.00 1.11 1.42 0.00 0.00 0.00 K alternative_acceptor TepIV,EI_chr2L_19548696_19549582 chr2L + chr2L_19553916_19553969;chr2L_19553916_19553978 chr2L_19553916_19553975 chr2L_19553362_19553915;chr2L_19553979_19556092 95.26 92.68 89.23 95.50 98.25 97.83 93.81 96.27 91.72 92.86 95.89 95.97 95.79 97.06 93.15 97.67 93.75 97.22 94.94 93.75 93.85 94.67 96.77 94.32 97.87 94.74 96.47 93.92 95.29 95.70 96.39 92.59 96.15 96.26 96.30 90.41 93.69 98.11 96.47 93.33 95.83 95.27 95.08 95.26 94.69 95.21 94.38 94.58 95.04 96.12 96.34 94.92 96.43 93.88 94.94 94.44 97.78 95.95 N multi_cassette CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525393_1529105 chr3L_1525393_1526333;chr3L_1526399_1526659;chr3L_1526732_1527189;chr3L_1527382_1527438;chr3L_1527614_1527673;chr3L_1528077_1529105 chr3L_1526334_1526398;chr3L_1526660_1526731;chr3L_1527190_1527381;chr3L_1527439_1527613;chr3L_1527674_1528076 chr3L_1525293_1525392;chr3L_1529106_1529206 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 35.29 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_acceptor CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789733_9789790;chr2L_9789740_9789790;chr2L_9789694_9789790;chr2L_9789751_9789790;chr2L_9789598_9789790 chr2L_9789718_9789790 chr2L_9789791_9789832;chr2L_9789594_9789597 16.00 16.67 11.43 13.95 19.05 8.70 13.46 13.56 16.44 10.53 18.75 13.73 18.18 19.35 17.65 13.33 16.67 20.83 10.34 16.92 20.00 10.34 21.57 11.11 16.13 22.22 17.65 21.74 17.24 15.38 15.56 19.05 13.33 21.57 7.69 13.79 17.14 8.33 13.51 11.48 10.71 13.21 19.23 12.12 15.00 18.18 16.00 12.77 17.46 13.04 13.16 13.79 21.05 11.11 21.62 18.18 18.18 20.00 K intron_retention mrj,RI_chr2R_12093733_12108627,I_chr2R_12108697_12109174 chr2R - chr2R_12091887_12091946 chr2R_12091886_12091887;chr2R_12091946_12091947 chr2R_12091767_12091886;chr2R_12091947_12092259 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 3.17 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG5854,RI_chr3R_19760655_19760703 chr3R + chr3R_19760655_19760750 chr3R_19760655_19760703 chr3R_19760555_19760654;chr3R_19760751_19760803 0.43 0.00 0.78 0.00 0.00 0.52 0.36 0.64 0.95 0.00 0.56 0.00 0.59 0.00 0.00 0.00 0.53 0.46 1.45 0.00 0.00 0.80 0.66 0.51 0.52 0.00 0.00 1.44 0.00 1.38 0.00 0.51 0.73 0.00 1.19 0.00 0.39 0.28 0.47 0.81 0.70 0.43 0.00 0.34 0.49 0.40 0.85 1.42 0.00 0.00 0.00 0.00 0.42 1.52 0.00 0.67 0.57 0.71 K intron_retention mth chr3L - chr3L_345312_345374 chr3L_345311_345312;chr3L_345374_345375 chr3L_345158_345311;chr3L_345375_345442 6.67 8.70 7.14 5.56 0.00 8.00 9.68 11.86 9.23 0.00 9.09 8.89 6.67 4.35 6.67 0.00 7.41 0.00 3.12 7.50 0.00 5.26 6.06 0.00 4.76 16.00 2.94 NA NA NA 13.33 NA NA 11.54 13.33 23.08 10.81 5.56 0.00 5.88 NA 9.76 5.56 6.90 7.69 NA 0.00 11.11 8.16 0.00 3.23 4.76 NA NA 2.70 5.00 10.53 NA K intron_retention CG30193,CG30190 chr2R + chr2R_18816815_18817321 chr2R_18816814_18816815;chr2R_18817321_18817322 chr2R_18816773_18816814;chr2R_18817322_18817596 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 97.83 98.92 99.17 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 98.97 100.00 100.00 100.00 100.00 100.00 100.00 98.84 98.75 98.90 97.67 100.00 100.00 100.00 100.00 98.46 98.94 K alternative_acceptor TER94,RI_chr2R_5880423_5880471 chr2R + chr2R_5880423_5880488 chr2R_5880423_5880471 chr2R_5880323_5880422;chr2R_5880489_5880571 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.22 0.00 0.00 0.47 0.29 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.18 0.00 0.00 0.00 0.27 0.00 0.00 0.26 0.00 0.00 0.22 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 K jcn_only_AD Mtch,RI_chr3L_184729_185366,E_chr3L_185249_186012,EI_chr3L_185308_185366,I_chr3L_185367_185925 chr3L + chr3L_185304_185366;chr3L_185308_185366 chr3L_184729_185366 chr3L_185367_185441;chr3L_184713_184728 0.00 0.68 0.00 0.43 0.71 0.00 0.00 0.00 0.61 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.34 0.85 0.00 0.00 0.40 0.88 0.00 0.00 0.60 0.00 0.34 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.39 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention porin,I_chr2L_10848864_10849515 chr2L - chr2L_10848169_10848240 chr2L_10848168_10848169;chr2L_10848240_10848241 chr2L_10847092_10848168;chr2L_10848241_10848468 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.12 0.28 0.00 0.00 0.16 0.00 0.00 0.13 0.25 0.56 0.00 0.00 0.05 0.00 0.14 0.08 0.00 0.00 0.00 0.82 0.63 0.32 0.00 0.13 0.00 0.16 0.00 0.00 0.15 0.00 0.36 0.00 0.00 0.00 0.41 0.60 0.19 0.00 0.19 0.00 0.00 0.08 0.39 0.20 0.00 0.00 0.00 0.00 0.18 0.12 0.00 K alternative_acceptor CG8173,I_chrX_17602681_17603175 chrX - chrX_17602681_17603214 chrX_17602699_17603214 chrX_17603215_17603275;chrX_17602581_17602680 1.98 0.00 3.77 1.47 0.00 2.13 0.00 0.00 0.83 2.56 0.00 1.96 2.70 2.70 0.00 3.49 0.00 1.79 1.92 2.15 4.17 NA 4.62 2.78 0.00 0.00 4.76 0.00 6.25 2.13 2.44 0.00 3.77 2.90 1.75 0.00 2.15 1.85 2.00 0.00 6.45 1.10 0.00 2.22 1.72 2.00 3.28 2.63 1.41 0.00 2.67 0.00 2.56 1.64 3.85 4.76 0.00 4.55 K intron_retention Rab11,RE_chr3R_16939259_16939667 chr3R + chr3R_16937189_16937376 chr3R_16937188_16937189;chr3R_16937376_16937377 chr3R_16937129_16937188;chr3R_16937377_16937577 15.38 21.88 11.76 15.94 10.75 12.40 42.05 11.11 13.85 13.79 5.04 15.02 13.13 15.53 15.38 15.23 14.96 5.80 14.47 6.40 6.21 15.62 62.50 32.35 62.07 21.35 67.86 40.00 30.00 10.00 14.19 5.31 6.82 13.45 39.39 21.88 50.00 42.86 36.36 16.88 22.37 12.00 10.34 27.03 5.15 13.40 62.50 3.85 10.16 31.25 48.00 33.33 25.58 75.00 9.90 38.46 32.56 6.30 K intron_retention I_chr3L_1494947_1496080,pUf68,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1500389_1501345 chr3L_1500388_1500389;chr3L_1501345_1501346 chr3L_1500289_1500388;chr3L_1501346_1501397 100.00 NA NA NA NA NA NA 93.75 95.00 NA 100.00 90.00 93.75 90.00 NA 90.00 NA NA 100.00 81.82 100.00 NA 91.67 NA NA NA 100.00 100.00 NA 100.00 63.64 NA NA 91.67 100.00 NA 100.00 NA NA 100.00 NA 100.00 NA 92.86 NA 100.00 100.00 100.00 100.00 90.00 90.91 NA NA NA NA 90.00 NA 100.00 K alternative_donor ben chrX + chrX_13890789_13892127;chrX_13890791_13892127;chrX_13891016_13892127;chrX_13890793_13892127;chrX_13890762_13892127;chrX_13890795_13892127;chrX_13890990_13892127;chrX_13890831_13892127;chrX_13890648_13892127 chrX_13890768_13892127 chrX_13892128_13892800;chrX_13890644_13890647 0.00 NA NA 33.33 NA NA 0.00 0.00 20.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA 33.33 0.00 NA NA NA NA NA 0.00 NA 0.00 50.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 K jcn_only_AA kal-1 chr3R + chr3R_19972025_19972096 chr3R_19972025_19972087 chr3R_19971831_19972024;chr3R_19972097_19972461 99.56 99.45 100.00 99.17 97.18 100.00 99.30 99.45 99.67 100.00 99.08 98.65 100.00 100.00 99.44 99.48 99.12 100.00 100.00 100.00 100.00 100.00 99.56 99.49 98.84 100.00 100.00 99.00 99.44 99.36 99.46 100.00 98.97 98.80 100.00 99.38 100.00 100.00 99.23 100.00 99.51 100.00 100.00 98.66 100.00 99.67 99.48 97.65 99.02 99.08 99.63 100.00 100.00 100.00 99.45 100.00 100.00 98.89 K intron_retention Unc-76,RI_chrX_1983640_1985001,I_chrX_2002576_2003165 chrX + chrX_1985925_1985994 chrX_1985924_1985925;chrX_1985994_1985995 chrX_1985835_1985924;chrX_1985995_1987597 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 13.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 K alternative_acceptor CG15093 chr2R - chr2R_14664332_14664398 chr2R_14664344_14664398 chr2R_14664399_14664462;chr2R_14664047_14664331 20.83 23.26 16.00 17.74 20.59 21.43 16.33 22.22 15.79 26.09 26.67 20.00 19.05 17.65 20.93 14.89 22.22 23.08 20.45 29.67 26.67 16.67 16.22 20.83 17.65 17.86 21.43 6.25 19.51 26.67 25.00 23.33 24.44 21.43 33.33 16.67 11.24 16.33 20.83 15.24 33.33 19.48 33.33 11.43 29.79 27.12 30.30 21.95 17.65 14.29 20.00 14.29 24.39 23.81 24.32 19.61 18.18 25.00 K intron_retention klar,I_chr3L_462559_472609,RI_chr3L_517594_539898 chr3L - chr3L_436614_436673 chr3L_436613_436614;chr3L_436673_436674 chr3L_436222_436613;chr3L_436674_436849 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.83 0.00 0.67 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention cic chr3R + chr3R_16121571_16121630 chr3R_16121570_16121571;chr3R_16121630_16121631 chr3R_16120276_16121570;chr3R_16121631_16121847 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention E(bx),E_chr3L_234653_234836,I_chr3L_239186_239264,I_chr3L_246324_246699 chr3L - chr3L_234653_234981 chr3L_234652_234653;chr3L_234981_234982 chr3L_234568_234652;chr3L_234982_235345 5.26 5.56 4.55 16.67 0.00 0.00 12.50 6.85 8.05 NA 0.00 10.77 17.24 2.70 4.55 8.62 6.25 10.00 1.79 6.12 NA 0.00 4.00 4.00 6.67 13.64 8.33 NA NA 0.00 4.88 NA NA 4.11 0.00 17.65 9.52 0.00 9.09 7.14 NA 3.12 5.26 0.00 NA 0.00 3.45 12.50 7.81 9.68 7.55 8.33 0.00 0.00 0.00 0.00 0.00 7.14 N alternative_acceptor CG30193,CG30190 chr2R + chr2R_18815153_18817321 chr2R_18815153_18816610 chr2R_18815039_18815152;chr2R_18817322_18817596 100.00 100.00 100.00 89.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD cul-2,RI_chr2L_21657668_21657832,noncoding_4226,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21657668_21657832;chr2L_21657742_21657832 chr2L_21657777_21657832 chr2L_21657833_21657932;chr2L_21657659_21657667 20.24 28.00 24.14 31.11 34.29 28.95 33.88 25.35 30.09 15.09 21.43 37.74 42.50 23.26 24.59 31.21 35.90 7.69 28.07 21.83 16.67 8.14 10.66 28.99 8.86 17.19 10.32 7.26 9.17 12.40 18.99 9.28 7.46 16.19 7.32 1.32 25.00 18.75 18.67 15.13 5.41 21.51 27.50 16.67 14.43 13.29 20.24 10.62 29.09 17.36 20.00 35.48 31.37 17.58 20.73 21.74 28.00 24.05 K alternative_acceptor casp,EI_chr2R_11914764_11914841 chr2R - chr2R_11914784_11914841;chr2R_11914764_11914841 chr2R_11914769_11914841 chr2R_11914842_11914941;chr2R_11914664_11914763 22.73 18.18 32.26 26.32 13.64 14.81 31.58 29.41 20.00 28.57 35.00 23.81 16.67 20.00 19.23 21.21 28.57 19.23 10.53 20.00 16.67 16.36 33.33 26.09 26.09 27.27 15.62 5.56 35.71 28.12 14.29 22.73 11.76 25.71 22.73 23.81 23.33 25.00 19.23 22.92 29.41 19.61 23.53 24.24 13.04 18.18 23.81 24.53 26.19 16.67 21.74 25.00 25.00 21.43 19.35 21.74 20.00 21.28 K intron_retention CG40045,RI_chr3L_24023955_24028531,RI_chr3L_24023958_24028536,I_chr3L_24024771_24028531,I_chr3L_24025959_24028531,I_chr3L_24028601_24028670 chr3L + chr3L_24024771_24027977 chr3L_24024770_24024771;chr3L_24027977_24027978 chr3L_24024683_24024770;chr3L_24027978_24028118 96.16 NA NA NA NA NA NA NA 88.89 NA NA 100.00 NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 92.31 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG34348 chrX + chrX_11234779_11237282 chrX_11234779_11237278 chrX_11234640_11234778;chrX_11237283_11237945 100.00 100.00 NA NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 NA 97.06 NA NA 96.00 NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 97.14 100.00 100.00 100.00 100.00 97.22 NA 100.00 100.00 100.00 97.44 100.00 100.00 K jcn_only_AD I_chr3L_18664773_18665233,GNBP2,I_chr3L_18667579_18667644 chr3L - chr3L_18668078_18668437;chr3L_18668078_18668478 chr3L_18668078_18668318 chr3L_18667645_18668077;chr3L_18668479_18668494 87.69 95.45 91.67 90.14 89.66 80.00 93.10 92.21 85.58 NA 89.66 75.34 74.19 91.43 95.65 95.65 80.00 80.95 90.48 73.40 90.91 88.00 90.00 86.67 78.26 90.32 94.29 NA NA NA 76.79 88.00 81.82 89.23 NA 84.62 80.00 NA 74.19 87.50 NA 82.19 89.19 80.49 86.36 92.31 62.86 94.29 85.94 87.88 85.71 84.00 NA NA 80.00 83.87 95.00 97.22 K jcn_only_AA CG10462 chr2L - chr2L_19734281_19734469;chr2L_19734413_19734469 chr2L_19734410_19734469 chr2L_19734470_19734941;chr2L_19733639_19734280 28.68 26.09 25.35 32.23 27.91 21.05 36.61 28.68 26.74 33.33 22.22 26.32 35.21 28.33 31.25 35.66 22.54 34.85 34.25 25.78 32.56 32.26 24.14 23.19 19.57 28.99 27.27 40.00 25.81 24.07 32.17 31.58 41.00 28.21 21.88 28.95 23.81 23.53 30.88 24.75 29.55 27.34 39.71 22.97 44.00 35.62 36.11 29.79 27.59 26.67 35.14 29.79 35.00 30.91 30.77 27.42 27.17 23.39 K alternative_donor CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21263124_21263647 chr2L_21263180_21263647 chr2L_21263648_21263786;chr2L_21262988_21263123 15.64 8.33 14.89 13.75 37.50 15.91 18.33 10.87 17.74 NA 10.71 16.13 20.00 12.24 14.58 16.48 24.00 9.09 14.81 16.90 12.00 19.05 13.16 19.05 20.83 24.44 16.22 20.00 28.00 12.00 13.33 16.67 25.00 14.81 16.13 12.90 7.69 33.33 13.04 10.71 35.71 15.19 15.00 18.75 14.29 9.38 NA 20.00 18.75 19.05 12.50 9.09 NA 15.38 10.94 9.09 16.67 26.92 K intron_retention btz,I_chr3R_23526114_23526320 chr3R + chr3R_23526248_23526320 chr3R_23526247_23526248;chr3R_23526320_23526321 chr3R_23526188_23526247;chr3R_23526321_23526420 4.55 NA NA 0.00 NA 0.00 7.14 0.00 21.05 NA NA 3.57 NA NA NA 0.00 NA NA 0.00 6.25 NA 10.42 9.09 14.29 NA NA NA 42.11 19.05 6.67 0.00 0.00 9.09 5.88 5.88 0.00 0.00 0.00 NA 11.11 0.00 8.70 NA 12.50 0.00 0.00 6.25 0.00 5.26 NA 5.26 NA NA 0.00 0.00 3.85 6.67 0.00 K alternative_donor Vha100-1,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24956994_24957407 chr3R_24957170_24957407 chr3R_24957408_24957547;chr3R_24956989_24956993 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention sra,RI_chr3R_12013022_12018544 chr3R + chr3R_12013022_12021752 chr3R_12013021_12013022;chr3R_12021752_12021753 chr3R_12012922_12013021;chr3R_12021753_12023321 7.14 4.26 4.40 8.00 5.95 5.41 21.05 4.88 2.75 5.88 4.72 7.14 5.13 5.88 5.97 7.69 2.67 0.00 6.17 3.80 2.44 13.44 9.93 11.48 20.22 8.22 40.71 38.50 4.72 15.92 23.81 8.54 8.93 4.46 8.05 15.62 5.45 9.24 11.27 6.59 13.14 4.76 9.26 7.59 4.70 8.40 9.20 3.65 5.47 23.08 9.17 12.12 0.00 5.71 6.85 7.27 9.24 1.80 K intron_retention Socs16D chrX - chrX_17716766_17716830 chrX_17716765_17716766;chrX_17716830_17716831 chrX_17716658_17716765;chrX_17716831_17716921 5.26 3.77 0.00 3.92 6.52 0.00 25.71 5.00 4.27 4.17 15.15 5.62 14.71 5.41 6.82 0.00 5.41 4.26 6.00 6.38 9.09 2.27 7.27 9.76 10.34 19.23 8.70 4.35 28.12 5.71 14.00 0.00 0.00 1.25 12.90 29.03 3.03 0.00 5.66 2.94 5.88 5.43 10.53 4.44 0.00 0.00 6.25 4.17 3.66 5.26 6.38 0.00 0.00 0.00 0.00 0.00 7.14 0.00 K intron_retention del chr2L - chr2L_21146886_21146939 chr2L_21146885_21146886;chr2L_21146939_21146940 chr2L_21145134_21146885;chr2L_21146940_21147823 34.88 25.00 27.27 58.33 13.33 38.10 37.50 35.90 37.84 NA 28.57 34.88 29.41 40.00 50.00 45.24 33.33 33.33 48.00 33.33 NA 33.33 44.44 44.44 40.00 36.84 28.57 64.29 50.00 34.62 32.43 NA 40.00 30.77 37.50 40.62 25.93 27.78 30.00 35.48 NA 29.79 41.18 27.59 46.15 40.00 33.33 36.84 40.00 30.77 32.00 30.77 14.29 17.65 35.71 46.67 27.78 33.33 N intron_retention IP3K2,I_chrX_13216481_13219804 chrX + chrX_13213081_13219804 chrX_13213080_13213081;chrX_13219804_13219805 chrX_13212448_13213080;chrX_13219805_13219869 43.75 46.67 NA NA NA NA NA NA 47.06 NA NA NA NA NA NA NA NA NA NA NA NA 39.13 NA 100.00 41.67 NA NA NA NA NA 33.33 NA 44.44 36.36 29.41 66.67 NA NA 30.77 NA 31.25 NA NA NA NA NA 43.75 100.00 47.62 NA 100.00 NA NA NA 40.00 NA NA NA K jcn_only_AA CG14803,CG14805 chrX + chrX_1763276_1763334 chrX_1763276_1763330 chrX_1762927_1763275;chrX_1763335_1763911 100.00 NA 96.43 100.00 96.67 100.00 87.50 100.00 98.08 NA NA 100.00 NA NA 100.00 100.00 NA NA NA 100.00 NA NA 95.45 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 98.11 97.22 NA 95.45 100.00 NA 97.14 100.00 NA 100.00 NA 95.65 93.10 90.00 NA 96.43 100.00 NA NA 96.30 NA NA 100.00 NA 100.00 100.00 K intron_retention CG17255,I_chrX_10359089_10359175,RI_chrX_10366177_10367270 chrX - chrX_10359101_10359175 chrX_10359100_10359101;chrX_10359175_10359176 chrX_10357883_10359100;chrX_10359176_10359275 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.52 1.13 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.20 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.47 0.00 0.69 0.00 K jcn_only_AD F_chrX_15764251_15765393,CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15764522_15765393;chrX_15764247_15765393;chrX_15764620_15765393;chrX_15764599_15765393 chrX_15764432_15765393 chrX_15765394_15765493;chrX_15764236_15764246 29.70 NA NA 28.00 NA NA 35.00 30.00 37.50 NA NA NA NA NA NA 27.27 NA NA 15.00 21.74 NA NA NA NA NA NA NA NA NA NA NA NA NA 29.41 NA NA NA NA NA NA NA 40.62 NA NA NA NA NA NA 52.63 NA NA NA NA NA NA NA NA NA K alternative_donor rdgB chrX + chrX_13666690_13666818 chrX_13666729_13666818 chrX_13666819_13667786;chrX_13666591_13666689 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 96.15 NA 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 NA NA 91.67 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 NA K intron_retention CG32425,I_chr3L_20490581_20505036,CG18281,CG17637,CG5078,I_chr3L_20502617_20503129,I_chr3L_20503880_20503985,I_chr3L_20504930_20505036 chr3L + chr3L_20490526_20505036 chr3L_20490525_20490526;chr3L_20505036_20505037 chr3L_20490481_20490525;chr3L_20505037_20505136 51.66 NA NA NA NA NA NA NA 56.25 NA NA NA NA NA NA 75.00 NA NA NA 60.00 NA 35.29 50.00 50.00 NA NA NA NA NA NA 77.78 NA NA 58.33 NA NA 30.77 NA NA 28.57 NA 53.33 NA NA NA NA NA 25.00 53.33 50.00 NA NA NA NA NA NA NA NA K multi_cassette CG18659,E_chr2R_5011363_5019110,RI_chr2R_5013572_5014531,I_chr2R_5016147_5016997 chr2R - chr2R_5011651_5014531 chr2R_5011651_5012248;chr2R_5012726_5013055;chr2R_5013572_5014531 chr2R_5012249_5012725;chr2R_5013056_5013571 chr2R_5011194_5011650;chr2R_5014532_5014631 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.07 100.00 100.00 100.00 100.00 100.00 100.00 98.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG15118,I_chr2R_15024324_15024455 chr2R - chr2R_15021937_15022387 chr2R_15022232_15022387 chr2R_15022388_15023130;chr2R_15021232_15021936 0.00 0.00 0.00 1.23 0.00 0.00 1.75 0.00 0.00 4.76 0.00 3.45 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 2.65 1.96 3.54 1.79 0.00 0.00 0.00 5.26 0.00 0.00 1.08 1.39 0.00 1.52 1.27 0.00 0.00 0.83 0.00 0.91 1.71 0.00 1.30 0.87 1.09 0.00 2.38 0.00 0.00 0.00 1.82 5.48 1.23 0.00 0.00 0.76 2.94 K cassette flfl,EI_chr3R_9513221_9513291,CG14367 chr3R + chr3R_9509873_9513291 chr3R_9509873_9510146;chr3R_9510247_9513291 chr3R_9510147_9510246 chr3R_9509647_9509872;chr3R_9513292_9513391 1.96 0.00 0.00 1.23 0.00 2.70 2.13 2.67 2.33 2.44 0.00 5.00 2.38 0.00 5.00 2.94 0.00 0.00 1.79 6.78 5.41 0.00 3.92 0.00 0.00 5.00 0.00 0.00 3.85 0.00 0.00 NA 0.00 4.84 3.85 4.35 0.00 0.00 0.00 2.33 0.00 3.85 3.45 0.00 5.88 5.00 14.29 2.33 1.45 0.00 2.78 0.00 4.55 NA 3.03 0.00 NA 0.00 K jcn_only_AD Hydr2,RI_chr2L_3164075_3164159 chr2L + chr2L_3167140_3167203 chr2L_3167146_3167203 chr2L_3167204_3167558;chr2L_3166970_3167139 0.37 0.47 0.85 0.18 1.05 0.69 0.43 0.33 0.48 0.34 0.00 0.00 0.62 0.32 0.20 0.21 0.57 0.28 0.00 0.12 0.00 0.70 0.00 0.49 0.32 0.80 0.39 0.58 0.31 0.92 0.28 0.42 0.97 0.45 0.00 0.77 0.46 0.00 0.60 0.37 0.00 0.98 0.77 0.66 0.25 0.00 0.57 0.48 0.32 0.73 0.48 0.80 0.00 0.37 0.22 0.29 0.23 0.34 K jcn_only_AD CG11247,I_chr3L_21718596_21718659 chr3L - chr3L_21718596_21718659 chr3L_21718596_21718654 chr3L_21718496_21718595;chr3L_21718660_21718759 100.00 100.00 100.00 97.96 100.00 97.92 100.00 98.75 100.00 100.00 100.00 97.78 100.00 100.00 100.00 100.00 97.50 100.00 100.00 97.85 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 96.88 100.00 97.83 100.00 100.00 96.55 100.00 98.31 100.00 100.00 97.12 96.97 98.98 97.06 100.00 100.00 98.31 100.00 98.36 100.00 100.00 97.56 96.30 94.29 100.00 100.00 100.00 100.00 97.06 K intron_retention ph-p,I_chrX_2025760_2030488,I_chrX_2025760_2030587 chrX - chrX_2025760_2030498 chrX_2025759_2025760;chrX_2030498_2030499 chrX_2025660_2025759;chrX_2030499_2030588 90.00 NA NA 87.50 NA NA NA 90.00 78.57 NA NA NA NA NA NA NA NA NA NA 90.91 NA 81.25 NA NA NA NA NA NA NA 87.50 NA NA 90.00 NA NA NA NA NA NA 92.86 NA 90.91 NA NA NA NA NA 90.91 90.00 NA 87.50 NA NA NA NA NA NA NA K jcn_only_AA rgr,I_chr2R_4488735_4489955 chr2R + chr2R_4496027_4496559 chr2R_4496027_4496554 chr2R_4495817_4496026;chr2R_4496560_4496899 98.11 97.78 100.00 100.00 100.00 100.00 100.00 94.59 98.28 100.00 100.00 96.47 95.00 100.00 100.00 100.00 92.00 96.00 100.00 96.97 100.00 98.06 96.74 98.51 97.30 97.50 95.59 98.44 96.97 98.33 95.56 100.00 97.09 100.00 97.30 100.00 97.40 98.11 97.94 97.33 94.94 98.39 100.00 98.46 94.32 97.44 97.47 97.00 95.71 98.51 98.73 98.11 95.24 97.14 100.00 98.15 97.37 100.00 K jcn_only_AD CG17883,I_chr2R_560147_560511,I_chr2R_560547_560618 chr2R + chr2R_560568_560618;chr2R_560147_560618;chr2R_560565_560618 chr2R_560547_560618 chr2R_560619_560642;chr2R_560047_560146 4.00 3.33 3.12 NA 4.00 0.00 1.09 1.52 4.76 NA 3.57 1.96 0.00 11.11 0.00 3.85 4.44 11.54 2.63 5.88 0.00 11.11 15.62 0.00 18.18 NA 0.00 0.00 NA 10.00 3.85 5.00 17.39 4.05 4.17 NA NA NA 0.00 9.76 NA 0.00 8.33 0.00 9.52 2.50 6.25 NA 4.35 0.00 3.85 4.00 6.45 6.67 5.88 10.26 2.04 6.38 K alternative_donor CG6597 chr3L + chr3L_20295603_20296166;chr3L_20295972_20296166 chr3L_20295938_20296166 chr3L_20296167_20296215;chr3L_20295573_20295602 7.14 11.11 6.25 3.57 0.00 NA 6.90 3.45 2.50 NA 10.00 11.11 0.00 0.00 4.35 0.00 0.00 7.69 0.00 3.12 7.14 11.76 7.69 6.25 9.09 6.67 11.11 NA 12.50 22.22 5.56 11.11 11.11 8.00 12.50 22.22 9.09 NA 20.00 7.41 10.00 4.17 4.76 6.67 5.88 10.00 18.18 6.25 8.82 0.00 10.00 0.00 10.00 NA 5.88 12.50 7.14 3.33 K jcn_only_AA CG6845,I_chr3L_148414_148465,I_chr3L_148414_148475,I_chr3L_148414_148489 chr3L + chr3L_148414_148465;chr3L_148414_148475;chr3L_148414_148461 chr3L_148414_148489 chr3L_148350_148413;chr3L_148490_148555 0.00 0.00 0.00 3.61 0.00 5.56 1.89 0.00 0.87 4.55 0.00 0.00 0.00 2.17 0.00 1.85 0.00 0.00 0.00 1.11 3.57 0.00 0.00 3.23 NA 0.00 NA NA 0.00 0.00 3.41 NA 0.00 2.22 0.00 NA 0.00 0.00 0.00 2.13 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.45 0.00 NA NA 1.37 0.00 3.23 0.00 K intron_retention CG32850,noncoding_20650,I_chr4_338996_340074,I_chr4_340294_340373,RI_chr4_340294_340597 chr4 + chr4_340294_340381 chr4_340293_340294;chr4_340381_340382 chr4_340194_340293;chr4_340382_340402 100.00 100.00 100.00 98.25 100.00 95.24 97.62 100.00 100.00 NA 94.44 98.33 95.65 96.67 96.77 100.00 100.00 100.00 97.22 98.46 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.25 100.00 94.12 100.00 92.86 100.00 100.00 100.00 97.96 100.00 100.00 94.74 97.37 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 97.50 100.00 95.83 100.00 K jcn_only_AA Flo,I_chr2R_11456012_11456623 chr2R - chr2R_11454673_11454747 chr2R_11454678_11454747 chr2R_11454748_11454816;chr2R_11454609_11454672 100.00 99.52 100.00 100.00 100.00 99.38 100.00 100.00 100.00 99.06 100.00 99.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.88 100.00 100.00 100.00 100.00 100.00 99.36 100.00 100.00 100.00 98.96 100.00 99.67 100.00 100.00 100.00 100.00 100.00 99.66 100.00 100.00 99.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907784_9908424;chr2L_9907784_9908531;chr2L_9907784_9908307 chr2L_9907784_9908405 chr2L_9907756_9907783;chr2L_9908532_9908619 3.57 0.00 4.26 5.19 2.63 3.57 2.99 3.70 3.07 NA 0.00 7.00 8.70 3.12 2.08 4.04 1.52 7.69 6.17 5.22 2.56 0.87 3.54 1.35 3.77 5.36 3.26 2.94 3.57 1.41 1.85 0.00 2.82 4.17 2.99 2.04 3.75 4.84 5.80 3.92 5.71 4.03 9.76 8.24 3.33 6.35 1.82 3.12 5.05 3.70 5.38 4.00 1.96 2.86 2.44 6.12 5.71 2.00 K alternative_donor caz,noncoding_24110,RI_chrX_16183147_16183258,RI_chrX_16183356_16185973 chrX + chrX_16183147_16183258 chrX_16183192_16183258 chrX_16183259_16183355;chrX_16183060_16183146 98.86 97.48 96.19 94.95 98.91 100.00 98.86 97.93 98.26 99.14 95.71 98.49 98.48 98.96 96.77 100.00 100.00 99.07 100.00 98.82 97.44 100.00 99.61 98.30 98.54 98.70 97.11 94.49 96.25 98.72 99.50 99.16 98.88 98.95 100.00 97.44 99.03 99.54 98.50 99.03 100.00 98.86 98.85 99.29 98.82 98.48 99.44 100.00 99.59 98.16 98.25 97.93 99.30 99.35 99.29 97.69 98.07 99.50 K alternative_acceptor east,CR_chrX_1912038_1912737 chrX + chrX_1913540_1913603 chrX_1913540_1913600 chrX_1913091_1913539;chrX_1913604_1913770 44.74 47.06 40.54 55.81 39.29 40.54 48.84 62.50 44.83 45.83 40.74 40.00 45.00 35.90 42.55 41.18 54.84 45.95 41.67 44.74 48.15 38.24 43.10 47.83 31.25 33.33 48.48 35.71 32.00 44.83 38.30 56.25 42.86 45.45 40.00 37.04 50.00 47.37 47.06 38.64 46.15 51.43 56.25 52.27 50.00 34.62 40.74 41.67 57.38 50.00 40.48 41.38 44.00 46.15 47.50 48.28 31.58 35.48 K alternative_donor CG3680,Pka-R1 chr3L + chr3L_20805565_20805623 chr3L_20805568_20805623 chr3L_20805624_20805770;chr3L_20805357_20805564 93.94 92.86 83.33 90.48 93.75 93.33 92.00 96.67 93.75 80.00 100.00 96.77 100.00 73.33 100.00 95.24 92.31 100.00 94.44 96.43 94.12 92.31 82.35 93.33 100.00 95.00 95.24 93.33 100.00 91.67 90.91 NA 100.00 96.15 90.91 100.00 95.45 92.31 95.24 96.00 100.00 92.59 90.00 94.74 93.33 92.31 90.00 100.00 89.66 100.00 95.24 78.57 90.91 90.00 94.44 94.12 100.00 91.67 K jcn_only_AD twin,RI_chr3R_20032242_20045321 chr3R - chr3R_20046286_20047514;chr3R_20046286_20047526 chr3R_20046286_20047530 chr3R_20046254_20046285;chr3R_20047531_20047647 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 3.12 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K cassette SPoCk,I_chr3L_22776339_22776519,I_chr3L_22777865_22778359 chr3L + chr3L_22766817_22770210 chr3L_22766817_22768414;chr3L_22768472_22770210 chr3L_22768415_22768471 chr3L_22766783_22766816;chr3L_22770211_22771924 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA K jcn_only_AA aPKC,I_chr2R_10833552_10833654,RI_chr2R_10849347_10850391 chr2R - chr2R_10833552_10833654;chr2R_10833596_10833654 chr2R_10832733_10833654 chr2R_10833655_10833754;chr2R_10832714_10832732 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 3.33 NA 0.00 NA 0.00 0.00 0.00 2.04 2.27 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 K alternative_donor alpha-Man-I,I_chrX_10218352_10219759,I_chrX_10218390_10219759 chrX - chrX_10218352_10219846;chrX_10218352_10219816;chrX_10218352_10219759;chrX_10218352_10219665;chrX_10218352_10219823;chrX_10218352_10219708 chrX_10218352_10219918 chrX_10218290_10218351;chrX_10219919_10219979 0.00 0.00 0.00 7.69 0.00 0.00 0.00 5.88 5.26 0.00 0.00 0.00 NA 0.00 0.00 4.76 0.00 0.00 0.00 7.14 0.00 22.22 0.00 0.00 0.00 0.00 0.00 NA NA 11.11 0.00 NA 0.00 0.00 NA 0.00 0.00 14.29 NA 0.00 0.00 7.69 0.00 16.67 NA 20.00 NA 11.11 0.00 0.00 10.00 12.50 0.00 NA 11.11 0.00 20.00 0.00 K intron_retention CG5522 chr2R + chr2R_12675766_12675830 chr2R_12675765_12675766;chr2R_12675830_12675831 chr2R_12675660_12675765;chr2R_12675831_12676171 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 1.82 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Ranbp16,I_chrX_15826655_15827277 chrX - chrX_15827572_15827638 chrX_15827572_15827633 chrX_15827176_15827571;chrX_15827639_15827691 100.00 90.91 91.67 90.48 100.00 90.00 92.00 100.00 97.14 100.00 88.89 100.00 88.89 90.00 84.62 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 NA NA 100.00 100.00 NA 91.67 100.00 100.00 NA 100.00 95.83 NA NA 100.00 NA 100.00 96.00 NA 96.30 100.00 93.33 NA 100.00 NA 100.00 95.45 NA 100.00 NA NA NA 100.00 NA NA NA K jcn_only_AD rut,I_chrX_14718760_14718821 chrX - chrX_14718961_14719994 chrX_14718961_14719778 chrX_14718822_14718960;chrX_14719995_14720063 38.10 NA NA NA NA NA NA NA 38.10 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor MB8.chr3R.pasa.66,ref1,RI_chr3R_2904130_2904237,RI_chr3R_2904305_2904543,I_chr3R_2904452_2904543 chr3R - chr3R_2904130_2904543 chr3R_2904130_2904237 chr3R_2904030_2904129;chr3R_2904544_2904643 3.51 2.90 3.03 7.80 3.70 3.57 5.34 4.58 3.54 2.50 4.95 3.56 6.49 4.30 2.55 10.53 2.97 3.67 6.02 3.17 3.39 11.70 2.64 1.85 2.81 5.26 7.09 6.59 4.39 6.67 3.15 4.84 4.72 5.30 3.55 2.66 2.06 1.93 1.33 2.63 4.35 3.15 4.94 2.38 2.66 1.38 1.77 3.55 4.10 3.59 3.51 3.28 1.21 2.13 2.70 2.44 1.10 2.13 K intron_retention RpL10Ab chr3L + chr3L_11816666_11816757 chr3L_11816665_11816666;chr3L_11816757_11816758 chr3L_11816300_11816665;chr3L_11816758_11817314 12.68 11.54 19.61 12.68 13.33 15.00 6.94 17.95 15.22 22.86 9.52 16.19 14.89 20.37 15.52 13.70 18.92 16.33 9.62 11.65 12.20 6.67 10.75 11.11 7.55 8.89 13.48 19.28 13.33 10.87 1.76 17.39 15.62 13.89 8.06 8.77 18.64 12.96 10.67 14.52 10.53 12.15 13.51 16.00 11.36 11.11 10.09 16.67 11.94 11.49 6.29 12.24 8.14 5.10 14.00 9.64 14.15 23.33 K multi_cassette Asator chr4 - chr4_495395_497917 chr4_495395_495647;chr4_495731_497588;chr4_497729_497917 chr4_495648_495730;chr4_497589_497728 chr4_495385_495394;chr4_497918_497940 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Ac78C,F_chr3L_21141024_21153737 chr3L - chr3L_21140529_21140594 chr3L_21140528_21140529;chr3L_21140594_21140595 chr3L_21140234_21140528;chr3L_21140595_21141033 17.07 NA NA 43.75 NA NA NA 15.38 38.46 NA NA 18.75 NA NA NA NA NA NA NA 11.76 NA 12.50 NA NA NA NA NA NA NA 13.04 NA NA 18.75 NA NA NA 25.00 NA NA 14.29 NA 20.00 NA 0.00 NA NA NA 9.38 30.77 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG5854,RI_chr3R_19760655_19760703 chr3R + chr3R_19759783_19759892 chr3R_19759783_19759854 chr3R_19759718_19759782;chr3R_19759893_19760066 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.53 0.35 0.00 0.00 0.00 1.80 0.00 0.00 1.03 0.00 0.65 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.88 0.33 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 K alternative_acceptor CG9171,I_chr2L_5770886_5770950,I_chr2L_5771210_5773014,RI_chr2L_5792418_5799117,I_chr2L_5799412_5800043 chr2L - chr2L_5770886_5770950 chr2L_5770889_5770950 chr2L_5770951_5771050;chr2L_5770786_5770885 78.95 78.95 78.57 100.00 NA 64.29 83.33 73.91 83.33 90.91 84.62 80.65 91.67 92.86 68.18 76.47 81.82 66.67 61.54 82.93 69.23 69.23 77.14 88.24 69.23 78.57 75.00 75.00 73.33 72.73 73.33 63.64 76.47 65.38 68.75 80.00 87.10 75.00 85.71 86.49 NA 85.19 100.00 78.95 NA 81.25 81.25 79.07 67.86 87.50 89.47 86.67 89.47 71.43 86.36 91.67 75.00 68.18 K intron_retention Dab chr3L + chr3L_16707421_16708540 chr3L_16707420_16707421;chr3L_16708540_16708541 chr3L_16706966_16707420;chr3L_16708541_16708611 16.80 18.75 16.67 8.70 NA 16.13 33.33 24.32 24.39 13.04 7.69 10.53 NA 17.39 14.81 14.29 20.00 8.33 30.43 36.59 12.50 16.28 14.29 15.79 6.67 20.00 25.00 NA 14.29 15.15 19.05 36.84 26.83 8.11 23.53 14.29 13.33 14.29 12.50 12.50 47.06 19.61 20.00 21.05 26.32 22.22 35.71 16.92 10.64 NA 9.52 NA 28.57 NA 12.90 NA 66.67 28.12 K intron_retention sol chrX + chrX_21228001_21228071 chrX_21228000_21228001;chrX_21228071_21228072 chrX_21227734_21228000;chrX_21228072_21228214 0.00 0.00 0.00 3.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 2.12 0.82 0.00 0.00 0.00 2.50 7.27 0.58 0.00 0.00 0.00 0.00 0.00 0.00 1.89 1.03 0.00 0.00 0.57 1.61 1.08 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 1.00 0.00 0.00 K intron_retention hkl chr2L + chr2L_19046143_19046206 chr2L_19046142_19046143;chr2L_19046206_19046207 chr2L_19045522_19046142;chr2L_19046207_19047047 85.71 89.47 83.78 93.51 96.43 88.57 93.22 88.46 85.71 85.00 75.00 93.24 78.79 85.00 97.83 88.71 92.11 81.58 91.84 86.46 83.33 46.88 81.94 83.64 86.21 92.11 92.98 89.66 85.71 70.21 73.08 88.24 86.96 87.50 80.00 85.71 83.67 82.05 85.37 77.42 88.89 88.61 87.88 78.26 78.95 88.24 86.54 78.95 88.31 73.33 88.14 73.68 83.72 83.33 86.00 85.71 85.71 70.49 K jcn_only_AD cnc,I_chr3R_19014852_19016738,I_chr3R_19046366_19046507,I_chr3R_19046619_19047567 chr3R - chr3R_19046366_19046507;chr3R_19046366_19047567 chr3R_19046366_19047563 chr3R_19046266_19046365;chr3R_19047568_19047667 47.73 NA NA 45.00 NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA 50.00 NA 54.55 NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA K intron_retention CG30392,CG30390 chr2R - chr2R_17179087_17179146 chr2R_17179086_17179087;chr2R_17179146_17179147 chr2R_17178537_17179086;chr2R_17179147_17179364 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_150069_150307;chr4_150069_150180;chr4_150069_150353;chr4_150069_150295;chr4_150069_150205 chr4_150069_150378 chr4_149969_150068;chr4_150379_150379 0.00 NA 33.33 0.00 0.00 0.00 5.00 5.88 0.00 NA 0.00 0.00 0.00 0.00 0.00 9.09 0.00 25.00 0.00 0.00 NA NA NA NA NA 16.67 NA NA NA NA 0.00 NA NA 6.67 NA NA NA NA NA NA NA 8.33 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention Ect4,I_chr3L_8075556_8086158,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8098397_8098539 chr3L_8098396_8098397;chr3L_8098539_8098540 chr3L_8098297_8098396;chr3L_8098540_8098757 24.63 26.52 17.33 34.36 26.27 20.17 31.90 29.95 24.58 29.33 32.18 20.70 30.99 22.33 30.08 24.31 33.61 22.73 35.25 18.18 24.53 36.36 20.97 27.68 26.42 34.78 43.84 44.55 28.92 22.00 24.24 29.47 24.63 24.26 26.42 39.86 19.90 21.77 21.82 27.80 23.85 24.12 29.47 30.43 14.60 25.77 17.65 25.26 26.58 23.14 21.16 25.51 16.13 24.14 24.63 23.21 20.00 16.88 K intron_retention X11L,RE_chrX_17497873_17498103 chrX + chrX_17497869_17498103 chrX_17497868_17497869;chrX_17498103_17498104 chrX_17497773_17497868;chrX_17498104_17498203 0.00 0.00 0.00 3.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 2.53 2.35 2.27 0.96 0.00 1.54 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 K jcn_only_AA CG10874 chr2L - chr2L_2190644_2190706 chr2L_2190647_2190706 chr2L_2190707_2190784;chr2L_2189869_2190643 16.00 16.87 17.19 11.54 25.86 16.33 20.73 19.05 12.38 13.64 23.53 16.84 13.89 12.50 12.00 20.97 15.69 17.19 16.00 15.79 5.36 16.16 20.95 13.68 18.97 15.62 17.44 16.00 20.00 20.00 12.68 9.52 15.00 18.75 22.03 15.87 15.89 15.19 16.46 10.29 10.42 13.01 7.41 14.06 26.32 15.71 21.62 24.14 19.05 11.86 14.95 16.36 21.62 17.78 13.85 12.82 16.54 10.20 K jcn_only_AD MB8.chr3R.pasa.66,Alh,I_chr3R_2924206_2924272,I_chr3R_2927820_2933442,RI_chr3R_2946518_2946663 chr3R - chr3R_2924206_2924276 chr3R_2924206_2924272 chr3R_2924106_2924205;chr3R_2924277_2924372 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.33 0.00 NA NA 2.08 NA NA 19.23 NA NA 0.00 NA 0.00 NA 0.00 2.44 3.85 NA NA 3.12 NA NA NA NA NA 4.55 7.14 NA NA 3.33 0.00 2.27 2.94 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 3.03 0.00 6.45 0.00 K alternative_acceptor CG32016,I_chr4_972691_972763,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_972704_972763;chr4_972691_972763 chr4_972719_972763 chr4_972764_972863;chr4_972619_972690 3.77 4.17 3.57 11.90 0.00 5.88 4.88 4.17 3.23 0.00 4.76 4.26 3.23 7.41 4.00 8.33 3.70 4.35 6.06 3.39 0.00 0.00 5.41 2.78 0.00 11.76 5.56 14.29 0.00 0.00 3.33 0.00 9.09 5.26 5.26 0.00 0.00 4.35 0.00 3.12 7.69 4.00 5.56 3.85 0.00 4.35 0.00 7.14 3.77 2.63 6.25 0.00 0.00 0.00 3.12 0.00 2.70 4.55 K cassette Pino,I_chr2L_1115944_1117443,I_chr2L_1116691_1116908,I_chr2L_1117918_1118565 chr2L - chr2L_1115944_1117443 chr2L_1115944_1116440;chr2L_1116691_1117443 chr2L_1116441_1116690 chr2L_1115844_1115943;chr2L_1117444_1117516 100.00 100.00 100.00 98.63 98.96 100.00 100.00 100.00 100.00 99.06 100.00 100.00 100.00 100.00 100.00 100.00 98.57 100.00 100.00 100.00 100.00 97.88 100.00 99.45 99.19 98.73 99.35 100.00 99.14 99.19 98.91 100.00 100.00 100.00 98.29 100.00 99.69 99.46 100.00 100.00 98.31 100.00 100.00 100.00 99.08 100.00 100.00 100.00 99.46 100.00 99.45 100.00 100.00 99.24 100.00 100.00 100.00 100.00 K alternative_donor ssp3 chr2L - chr2L_18942959_18943282 chr2L_18942959_18943276 chr2L_18940688_18942958;chr2L_18943283_18943901 88.19 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA 88.89 NA NA 75.00 NA NA NA NA NA NA NA K alternative_acceptor pcx,fs(1)K10 chrX + chrX_2119897_2119950 chrX_2119897_2119938 chrX_2119744_2119896;chrX_2119951_2120260 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 1.92 0.00 3.33 1.49 3.45 0.00 2.04 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 2.44 2.38 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.70 0.00 2.20 0.00 0.00 2.08 NA 1.37 0.00 0.00 NA NA NA 0.00 1.54 NA 2.13 0.00 NA NA 2.27 NA NA NA K jcn_only_AD RpL27,I_chr3R_21510239_21510298,RI_chr3R_21510239_21510441,I_chr3R_21510239_21510464,I_chr3R_21510239_21510656,I_chr3R_21510239_21510726 chr3R - chr3R_21510239_21510464;chr3R_21510239_21510656;chr3R_21510239_21510680;chr3R_21510239_21510298;chr3R_21510239_21510746 chr3R_21510239_21510739 chr3R_21510139_21510238;chr3R_21510747_21510756 14.55 10.34 13.33 13.86 8.16 20.83 11.11 11.29 11.24 21.82 8.33 22.86 21.43 20.83 8.65 17.07 10.64 8.89 12.09 25.26 16.67 27.50 15.22 13.04 12.20 8.86 13.04 16.18 20.31 42.59 6.67 31.34 35.79 11.93 16.67 25.71 18.31 11.11 17.86 28.83 35.21 12.26 10.42 28.57 23.60 29.58 18.00 29.03 17.92 14.55 7.69 13.95 8.26 4.76 7.80 13.46 9.00 29.51 K jcn_only_AD Elp3 chr2L + chr2L_4444833_4444894 chr2L_4444837_4444894 chr2L_4444895_4444963;chr2L_4444769_4444832 0.73 0.00 0.00 2.00 4.76 0.00 2.50 2.50 0.00 NA 0.00 4.44 4.35 NA 3.12 0.00 NA 0.00 NA 1.47 0.00 6.67 4.08 4.35 NA 0.00 4.55 NA NA 0.00 9.52 NA 0.00 4.17 NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 8.33 NA 3.77 0.00 3.03 7.69 3.70 NA 4.00 13.79 0.00 0.00 K jcn_only_AD rhea,E_chr3L_8554660_8564426,I_chr3L_8556289_8556981,I_chr3L_8563622_8564067 chr3L + chr3L_8556735_8557078 chr3L_8557008_8557078 chr3L_8557079_8557081;chr3L_8556646_8556734 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 NA 0.00 1.96 NA 0.00 0.00 2.27 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA NA K intron_retention Vha100-1,I_chr3R_24958227_24960770,RI_chr3R_24959152_24959582,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24958227_24960770 chr3R_24958226_24958227;chr3R_24960770_24960771 chr3R_24958127_24958226;chr3R_24960771_24960870 43.75 NA NA 63.64 NA NA 66.67 NA 69.23 NA NA NA NA NA NA NA NA NA NA NA NA 36.00 52.63 NA 36.36 NA 25.00 NA NA NA 9.52 NA NA 63.64 NA NA 21.43 NA 30.77 25.00 NA 46.15 NA 60.00 NA NA NA NA NA NA 43.75 NA NA NA NA NA NA NA K intron_retention Scamp,I_chrX_15342614_15342891,I_chrX_15343542_15343655 chrX - chrX_15342058_15342411 chrX_15342057_15342058;chrX_15342411_15342412 chrX_15341928_15342057;chrX_15342412_15342613 0.88 1.75 0.00 2.42 0.00 0.00 1.32 0.00 0.88 2.67 0.00 1.38 0.00 0.00 2.02 1.39 0.00 0.00 0.95 0.67 0.00 3.54 1.82 2.94 0.00 0.00 1.10 0.00 0.00 0.93 0.00 3.17 1.89 1.32 0.00 0.00 0.78 3.33 1.67 1.18 0.00 0.86 0.00 1.63 0.00 0.00 1.11 1.00 2.72 5.05 1.79 4.41 0.00 0.00 0.00 1.04 4.63 0.00 K alternative_donor Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4833364_4834454;chrX_4833234_4834454;chrX_4833308_4834454;chrX_4833338_4834454 chrX_4833203_4834454 chrX_4834455_4834880;chrX_4833197_4833202 2.63 0.00 14.29 6.67 0.00 NA 0.00 0.00 8.82 12.50 NA 13.33 0.00 0.00 0.00 8.33 9.09 0.00 7.14 10.00 NA 44.44 NA NA NA NA NA NA NA 11.11 0.00 NA 11.11 5.26 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA NA NA NA 0.00 5.56 NA NA NA NA NA 12.50 NA NA NA K intron_retention shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9785143,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9770053_9788941 chr2R_9770052_9770053;chr2R_9788941_9788942 chr2R_9769906_9770052;chr2R_9788942_9789041 4.08 7.69 0.00 12.20 0.00 0.00 3.64 9.09 6.25 8.00 0.00 4.48 NA 7.14 4.35 4.08 4.26 0.00 9.09 5.26 0.00 3.45 4.65 0.00 5.88 0.00 0.00 NA 0.00 6.45 7.69 NA 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 NA 7.55 4.76 4.55 NA NA NA 5.71 15.15 NA 0.00 NA NA NA 3.33 NA NA NA K cassette CG17370,RI_chr3R_21707998_21710705,RI_chr3R_21714780_21715376 chr3R + chr3R_21707998_21711103 chr3R_21707998_21710840;chr3R_21711042_21711103 chr3R_21710841_21711041 chr3R_21707898_21707997;chr3R_21711104_21711551 7.69 10.71 10.71 10.71 3.45 7.41 10.00 6.12 9.33 5.56 7.41 8.33 8.70 5.26 13.79 3.77 8.00 13.64 6.67 10.34 5.56 13.33 5.56 8.89 8.70 16.67 5.17 17.24 7.89 14.29 6.90 4.00 12.00 8.33 3.45 10.53 6.78 7.69 5.71 4.17 10.00 6.15 14.29 5.00 10.53 4.65 7.14 3.03 13.46 6.67 11.11 6.67 7.69 7.14 5.71 5.56 18.75 3.45 K jcn_only_AA CG7556,I_chrX_19072966_19073032 chrX - chrX_19072281_19073032 chrX_19072966_19073032 chrX_19073033_19073132;chrX_19072073_19072280 0.00 0.58 0.00 0.00 0.81 0.76 0.00 0.00 0.86 0.00 0.97 0.00 0.00 0.98 0.00 0.95 0.00 0.00 0.00 0.00 0.78 0.00 0.84 0.00 0.00 0.00 0.00 0.61 0.00 1.04 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 2.23 0.00 0.00 0.00 0.00 0.00 0.50 0.62 K cassette lig,I_chr2R_3960977_3961116,I_chr2R_3960977_3961119,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3960284_3961104;chr2R_3960740_3961104 chr2R_3960284_3960871,chr2R_3960740_3960871;chr2R_3960977_3961104 chr2R_3960872_3960976 chr2R_3959868_3960283;chr2R_3961105_3961205 92.89 95.16 93.86 97.60 96.46 94.97 91.43 96.17 92.14 89.96 91.00 95.13 94.81 92.90 93.47 94.81 95.03 91.62 84.86 91.62 89.01 91.04 94.66 94.92 91.13 85.15 90.69 94.50 85.60 92.63 92.54 93.26 89.44 94.83 92.13 87.54 94.30 95.31 93.09 93.66 86.46 91.53 94.58 95.58 88.46 91.22 93.82 89.26 92.33 96.96 94.32 94.81 91.50 92.57 92.89 92.92 91.73 90.12 K intron_retention E2f,I_chr3R_17452573_17458606,R_chr3R_17452574_17485937,CG6353 chr3R - chr3R_17452573_17457854 chr3R_17452572_17452573;chr3R_17457854_17457855 chr3R_17452474_17452572;chr3R_17457855_17457956 0.00 0.00 0.00 1.23 0.00 0.00 1.94 0.91 0.00 0.00 0.00 1.12 0.00 0.00 0.00 1.38 0.00 0.00 3.08 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 2.82 1.83 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention sima,I_chr3R_25908044_25935016,F_chr3R_25908044_25945850,noncoding_20087 chr3R + chr3R_25925641_25929824 chr3R_25925640_25925641;chr3R_25929824_25929825 chr3R_25925377_25925640;chr3R_25929825_25929970 16.67 NA 13.33 29.03 NA NA 28.57 12.50 28.57 NA NA 27.59 25.00 20.00 NA 36.00 NA NA NA 16.67 25.00 15.38 8.00 NA NA NA NA NA NA NA 16.67 NA 0.00 33.33 NA 14.29 NA NA NA NA NA 16.67 NA NA NA NA NA 0.00 21.43 0.00 6.67 NA NA NA 26.67 NA NA NA K intron_retention CG31689,I_chr2L_2730373_2736310,I_chr2L_2730470_2736310,RI_chr2L_2736137_2736310,I_chr2L_2736230_2736310,I_chr2L_2736431_2737036 chr2L + chr2L_2730373_2736173 chr2L_2730372_2730373;chr2L_2736173_2736174 chr2L_2730370_2730372;chr2L_2736174_2736229 47.22 28.57 60.00 41.38 61.54 47.37 41.18 36.11 52.54 NA 53.33 41.67 50.00 58.62 50.00 48.94 32.00 61.11 46.88 60.53 50.00 53.85 41.86 43.48 52.63 42.86 37.50 53.33 33.33 51.85 56.00 NA 58.33 42.31 42.86 45.83 47.06 42.86 52.94 29.03 46.15 47.37 34.78 50.00 NA 27.27 54.55 50.00 51.22 29.17 43.33 47.83 35.71 41.67 37.50 36.84 50.00 50.00 K intron_retention CG8709,I_chr2R_4026143_4026205,I_chr2R_4027128_4027182,I_chr2R_4027682_4027747,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4025188_4026442 chr2R_4025187_4025188;chr2R_4026442_4026443 chr2R_4024824_4025187;chr2R_4026443_4026546 2.25 0.00 0.00 1.98 2.70 1.32 4.55 2.04 2.20 1.47 0.00 3.42 1.61 3.85 4.60 4.76 1.59 2.53 2.30 1.37 0.00 3.39 2.55 1.35 2.25 2.41 3.31 6.06 2.86 1.79 0.00 2.44 2.86 4.21 0.00 5.41 1.59 0.88 3.68 2.48 3.37 1.92 3.03 2.56 2.63 1.53 2.15 1.79 3.03 1.41 2.21 4.23 0.00 0.00 3.57 1.87 1.74 4.39 K intron_retention CG6650,I_chr3L_14026788_14026844 chr3L + chr3L_14026784_14026844 chr3L_14026783_14026784;chr3L_14026844_14026845 chr3L_14026688_14026783;chr3L_14026845_14026944 0.00 0.00 0.00 3.08 0.00 0.00 2.27 1.56 1.53 0.00 0.00 0.70 0.00 3.28 0.00 0.00 0.00 0.00 0.00 1.51 0.00 4.84 1.37 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.40 5.26 1.85 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 2.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA lwr,RI_chr2L_542347_542429 chr2L - chr2L_542347_542429;chr2L_542351_542429 chr2L_542380_542429 chr2L_542430_542529;chr2L_542247_542346 0.75 0.45 2.73 0.00 1.55 0.00 1.12 0.82 0.00 1.23 1.32 0.86 0.69 1.23 0.97 0.47 0.00 0.00 0.00 0.68 1.29 0.46 1.90 0.75 0.00 0.86 0.00 0.00 1.88 0.50 0.00 0.00 0.88 0.00 0.53 1.81 0.00 1.50 0.00 1.56 1.73 0.60 0.70 0.93 1.12 1.29 0.00 0.76 1.69 0.47 1.30 0.00 0.46 0.40 1.88 1.02 1.55 2.76 K alternative_donor Arf79F,I_chr3L_22863166_22863946,I_chr3L_22863166_22864419,RI_chr3L_22863251_22863389,RI_chr3L_22863251_22863952,I_chr3L_22863251_22864009,I_chr3L_22863251_22864188,I_chr3L_22863251_22864501,I_chr3L_22863251_22864629,RI_chr3L_22863251_22864763,I_chr3L_22863251_22864866,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22863166_22865156 chr3L_22863166_22865023 chr3L_22863151_22863165;chr3L_22865157_22865157 100.00 96.67 100.00 100.00 100.00 96.55 100.00 98.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 98.65 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 94.74 100.00 96.77 K alternative_acceptor CG31633 chr2L - chr2L_6656131_6656195 chr2L_6656142_6656195 chr2L_6656196_6656264;chr2L_6656065_6656130 88.19 NA 87.50 88.89 NA NA 91.67 75.00 93.33 NA NA 72.73 NA 75.00 NA 91.67 NA NA NA 76.47 NA 94.74 94.44 87.50 NA NA 69.23 86.96 94.44 72.73 60.00 88.89 90.00 87.50 90.00 91.67 90.91 87.50 92.31 92.86 NA 63.64 NA 92.31 NA 86.67 100.00 100.00 NA 83.33 78.57 72.73 80.00 87.50 77.78 90.00 90.00 100.00 K intron_retention Cct1,Cct2 chr3L + chr3L_1546307_1550713 chr3L_1546306_1546307;chr3L_1550713_1550714 chr3L_1546118_1546306;chr3L_1550714_1551288 1.97 1.54 2.44 2.17 2.75 1.36 1.81 1.87 2.02 4.08 1.87 4.17 0.00 1.32 2.48 3.16 3.36 0.97 3.51 4.86 1.49 3.07 0.74 1.97 0.00 0.62 5.37 4.29 3.39 0.00 2.21 0.00 1.85 2.43 4.58 0.00 0.00 0.00 1.41 2.17 1.16 2.33 3.33 2.08 3.60 1.10 1.37 3.59 2.17 3.66 2.69 1.11 0.00 0.00 2.34 0.00 0.00 1.05 K jcn_only_AA CG17838,I_chr3R_16623576_16628011 chr3R + chr3R_16623576_16624036 chr3R_16623576_16624012 chr3R_16623476_16623575;chr3R_16624037_16624131 62.50 73.17 50.98 63.21 73.77 57.14 35.00 68.18 54.84 74.32 67.39 72.73 100.00 NA 60.00 63.08 67.50 48.39 56.00 47.27 51.52 62.79 61.63 83.78 59.46 54.24 69.57 50.00 55.26 51.85 60.00 44.00 56.67 62.92 74.36 82.46 58.67 65.45 52.17 70.71 56.67 60.00 62.50 67.80 41.38 63.33 46.15 71.13 50.00 NA 66.67 63.33 62.96 NA 57.89 NA 70.00 72.22 K intron_retention Nup154,I_chr2L_11009331_11009442,I_chr2L_11011380_11011453 chr2L + chr2L_11005302_11005367 chr2L_11005301_11005302;chr2L_11005367_11005368 chr2L_11005139_11005301;chr2L_11005368_11005730 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3295176;chr2R_3294566_3295244;chr2R_3294566_3294634;chr2R_3294566_3294636;chr2R_3294566_3294638;chr2R_3294566_3294642;chr2R_3294566_3294714 chr2R_3294566_3295280 chr2R_3294491_3294565;chr2R_3295281_3295302 3.85 7.69 5.26 0.00 0.00 7.14 0.00 4.35 10.81 0.00 6.25 3.03 15.38 7.14 5.56 0.00 0.00 0.00 5.56 2.44 6.25 0.00 4.76 5.26 13.33 0.00 5.56 0.00 0.00 0.00 6.25 0.00 4.00 0.00 0.00 5.26 5.26 0.00 13.64 3.57 0.00 3.85 7.14 0.00 5.88 6.25 0.00 0.00 3.23 0.00 0.00 0.00 14.29 12.50 4.55 8.33 0.00 3.85 K intron_retention Nop60B,I_chr2R_20063248_20063949,F_chr2R_20073291_20073744 chr2R + chr2R_20064355_20064415 chr2R_20064354_20064355;chr2R_20064415_20064416 chr2R_20063950_20064354;chr2R_20064416_20064807 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 K jcn_only_AA AT25722,CG3376 chr2R + chr2R_20151869_20152304 chr2R_20151869_20152108 chr2R_20151683_20151868;chr2R_20152305_20152726 100.00 100.00 100.00 NA NA 100.00 100.00 98.65 100.00 96.00 NA 98.72 100.00 100.00 94.12 100.00 NA 100.00 100.00 96.67 100.00 100.00 100.00 98.00 NA 90.32 97.30 NA 97.96 100.00 96.43 NA 96.00 100.00 96.30 90.48 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.15 K multi_cassette Nedd4,I_chr3L_17534127_17534409,I_chr3L_17534504_17535990,I_chr3L_17535485_17536604,I_chr3L_17536186_17536604,I_chr3L_17536713_17536777,I_chr3L_17536813_17536863 chr3L + chr3L_17534504_17536863 chr3L_17534504_17535299;chr3L_17535485_17535689;chr3L_17535913_17535990;chr3L_17536063_17536604;chr3L_17536713_17536863 chr3L_17535300_17535484;chr3L_17535690_17535912;chr3L_17535991_17536062;chr3L_17536605_17536712 chr3L_17534419_17534503;chr3L_17536864_17536877 97.22 90.00 92.86 65.38 83.33 90.00 62.50 94.12 100.00 92.86 100.00 100.00 100.00 88.89 90.00 100.00 100.00 90.00 71.43 97.22 90.00 100.00 100.00 93.75 88.89 100.00 94.12 100.00 93.75 93.75 100.00 100.00 100.00 94.44 100.00 100.00 95.65 100.00 85.00 100.00 90.91 96.15 100.00 100.00 100.00 100.00 90.00 100.00 91.67 100.00 100.00 91.67 100.00 87.50 100.00 100.00 100.00 94.12 K jcn_only_AA CG10874 chr2L - chr2L_2190785_2191849 chr2L_2191079_2191849 chr2L_2191850_2192090;chr2L_2190707_2190784 100.00 98.39 98.18 100.00 100.00 100.00 97.33 98.48 100.00 100.00 100.00 98.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.46 99.35 97.10 98.25 100.00 99.07 100.00 100.00 98.63 99.05 100.00 100.00 99.50 100.00 100.00 100.00 100.00 99.15 99.40 100.00 99.64 100.00 98.11 100.00 100.00 100.00 98.15 100.00 100.00 100.00 100.00 K jcn_only_AD Dsp1,I_chrX_16231287_16231413 chrX + chrX_16227752_16228333;chrX_16227804_16228333;chrX_16227677_16228333;chrX_16227797_16228333 chrX_16228273_16228333 chrX_16228334_16228446;chrX_16227667_16227676 50.00 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9390195;chr2R_9389597_9390151;chr2R_9389597_9389907;chr2R_9389597_9389940;chr2R_9389597_9390293;chr2R_9389597_9389751;chr2R_9389597_9389753;chr2R_9389597_9389757 chr2R_9389597_9390264 chr2R_9389497_9389596;chr2R_9390294_9390295 0.00 0.00 2.44 3.39 4.17 0.00 0.00 4.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.98 0.00 0.00 0.00 4.17 0.00 2.70 0.00 0.00 0.00 0.00 5.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 4.17 K jcn_only_AA CG31715,I_chr2L_10341933_10342151,I_chr2L_10341933_10342155 chr2L + chr2L_10341933_10342155;chr2L_10341933_10342151 chr2L_10341933_10342149 chr2L_10341833_10341932;chr2L_10342156_10342233 98.90 100.00 100.00 98.10 100.00 98.84 98.60 97.89 99.24 100.00 98.81 98.95 98.25 99.21 97.33 99.47 97.86 98.82 99.35 97.89 98.78 100.00 100.00 98.23 100.00 96.92 100.00 100.00 95.35 100.00 99.24 98.94 98.63 98.30 100.00 96.88 100.00 96.61 100.00 98.13 98.33 99.14 98.04 100.00 100.00 97.67 98.90 96.36 97.38 100.00 99.01 98.39 100.00 96.74 98.59 100.00 98.84 99.33 K jcn_only_AD gpp,I_chr3R_2271795_2272181,CG33324 chr3R + chr3R_2270033_2272181 chr3R_2271795_2272181 chr3R_2272182_2272281;chr3R_2269544_2270032 26.80 38.10 20.93 32.26 10.34 30.51 21.11 32.88 26.80 12.77 29.55 37.65 64.10 36.84 17.65 27.63 39.02 11.54 37.50 28.45 32.26 12.70 23.36 25.00 8.33 29.27 20.00 12.96 6.85 19.67 26.67 27.27 32.69 35.92 37.10 21.88 8.82 22.73 12.93 16.67 35.29 17.86 35.00 21.11 14.10 33.33 21.67 22.45 29.63 28.70 24.53 21.43 37.70 36.23 31.58 26.53 28.12 28.26 N alternative_acceptor CG7203,LKR,I_chr2L_7795654_7795717 chr2L - chr2L_7794769_7795509 chr2L_7795446_7795509 chr2L_7795510_7795653;chr2L_7794592_7794768 0.41 0.40 0.00 0.43 0.42 0.00 0.29 0.23 0.30 0.72 2.08 0.21 0.54 0.43 0.37 0.64 0.00 0.37 0.41 0.17 0.88 1.55 0.00 0.39 0.00 0.39 0.35 0.98 1.49 0.78 0.37 0.00 1.30 0.24 0.57 0.52 0.32 0.58 0.28 0.80 1.12 0.22 0.49 0.45 1.03 0.60 0.60 0.58 0.25 0.79 0.30 0.66 1.18 0.00 0.31 0.00 0.00 1.19 K intron_retention Pka-R2,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5887031_5887238 chr2R_5887030_5887031;chr2R_5887238_5887239 chr2R_5886930_5887030;chr2R_5887239_5887420 0.00 0.00 2.70 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.85 0.00 NA 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 6.25 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA K alternative_acceptor CG11790,CG11791 chr3R + chr3R_20876091_20876902 chr3R_20876091_20876354 chr3R_20876022_20876090;chr3R_20876903_20877278 84.44 73.53 77.14 90.91 85.71 73.53 89.36 84.21 86.42 71.43 85.71 87.27 72.97 80.56 89.47 95.83 82.35 80.65 83.33 88.89 85.71 84.00 84.44 81.08 95.45 96.77 94.29 87.50 96.30 87.50 85.71 88.46 85.00 82.26 95.83 87.10 81.58 84.00 77.14 82.35 83.33 81.82 84.00 85.42 90.62 86.54 72.09 94.29 86.15 91.67 84.21 84.00 75.00 82.35 84.44 78.79 75.61 78.05 K alternative_acceptor CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_243673_244182;chr4_243657_244182;chr4_243639_244182 chr4_243585_244182 chr4_244183_244282;chr4_243557_243584 0.00 0.00 3.23 0.00 4.35 0.00 0.00 1.33 1.16 NA 0.00 1.32 2.63 0.00 0.00 0.00 3.23 7.69 2.13 1.27 5.56 5.26 0.00 0.00 10.00 0.00 4.17 0.00 0.00 0.00 1.64 6.67 0.00 0.00 0.00 12.50 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 16.67 6.67 0.00 10.00 1.05 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14741 chr3R - chr3R_7896552_7896607 chr3R_7896551_7896552;chr3R_7896607_7896608 chr3R_7896222_7896551;chr3R_7896608_7896831 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 4.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention HLH106,RI_chr3L_19787260_19787323 chr3L + chr3L_19791401_19791473 chr3L_19791400_19791401;chr3L_19791473_19791474 chr3L_19791242_19791400;chr3L_19791474_19792062 2.12 2.01 1.92 1.85 2.33 2.50 2.25 2.27 1.43 2.02 1.54 2.67 2.40 2.25 2.47 2.59 1.57 2.18 1.66 2.34 1.71 1.84 2.41 2.23 2.19 1.99 3.05 3.96 1.43 1.97 2.84 1.43 1.90 2.15 3.23 3.43 2.04 1.63 1.75 2.18 2.52 2.12 2.74 1.34 2.21 3.36 2.28 2.23 2.04 1.52 1.80 1.80 1.21 2.35 1.77 1.93 1.07 1.66 K intron_retention CG5059,I_chr3L_20509233_20511440 chr3L - chr3L_20508484_20508543 chr3L_20508483_20508484;chr3L_20508543_20508544 chr3L_20507785_20508483;chr3L_20508544_20508720 0.00 0.00 1.15 0.00 0.00 0.00 0.93 1.63 1.20 0.00 0.00 2.88 0.00 1.41 0.00 0.00 0.00 0.00 1.27 0.85 0.00 0.00 4.82 1.23 0.00 0.00 2.63 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 1.33 0.00 0.00 0.00 2.50 0.79 0.95 1.32 0.00 1.03 2.00 0.00 1.22 3.37 2.17 1.25 0.00 K cassette mthl10 chr3L - chr3L_333717_334974;chr3L_333641_334974 chr3L_333641_333941,chr3L_333717_333941;chr3L_334120_334974 chr3L_333942_334119 chr3L_333522_333640;chr3L_334975_335169 96.15 98.41 96.88 72.73 90.38 92.98 100.00 93.48 98.46 95.24 91.43 98.90 75.51 96.15 98.31 98.51 93.33 97.96 92.98 95.65 90.70 96.30 90.32 96.49 93.94 89.47 97.96 94.12 68.97 96.77 100.00 96.88 81.25 95.24 96.67 90.48 96.55 97.92 95.29 98.81 84.62 96.30 97.73 97.18 97.87 97.83 97.50 97.44 94.90 97.87 95.45 94.59 92.50 98.15 98.48 95.65 94.44 94.74 K alternative_donor CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907848_9908531 chr2L_9907848_9908424 chr2L_9907756_9907847;chr2L_9908532_9908619 98.41 100.00 96.43 100.00 100.00 100.00 100.00 97.50 98.41 100.00 92.86 100.00 94.44 95.65 100.00 97.96 95.45 100.00 96.67 98.95 90.48 95.18 98.31 97.44 97.50 100.00 100.00 94.12 98.04 98.15 100.00 100.00 97.87 97.96 100.00 98.51 97.50 100.00 100.00 98.36 100.00 100.00 95.83 100.00 96.67 98.15 97.83 98.04 100.00 100.00 98.11 96.00 100.00 100.00 100.00 96.97 100.00 100.00 K alternative_donor CG14411 chrX + chrX_14726979_14727176 chrX_14726994_14727176 chrX_14727177_14730337;chrX_14726671_14726978 93.88 92.59 90.48 100.00 96.43 100.00 87.23 91.38 98.44 91.43 90.91 98.46 92.00 97.14 100.00 96.67 100.00 90.62 93.55 96.72 87.50 98.04 90.54 93.24 100.00 97.06 96.10 92.31 95.12 92.31 92.31 98.15 93.98 91.84 93.88 88.89 98.33 89.06 89.02 93.15 88.57 93.51 92.00 94.74 95.12 89.80 94.00 95.56 95.08 94.03 93.22 96.77 94.59 95.65 84.85 89.06 93.48 95.00 K alternative_donor CG9135,I_chr2L_6050922_6051505 chr2L + chr2L_6050922_6051616 chr2L_6051068_6051616 chr2L_6051617_6052022;chr2L_6050822_6050921 0.00 NA NA 2.94 0.00 0.00 4.55 3.57 0.00 0.00 0.00 2.70 0.00 NA 0.00 0.00 6.67 0.00 3.85 1.59 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA 0.00 5.71 NA NA NA NA NA 3.45 NA 2.27 6.67 NA 0.00 NA NA 4.76 0.00 NA NA NA NA NA 8.00 NA NA NA K intron_retention CG3744,I_chr3R_20701248_20701968 chr3R - chr3R_20701722_20701968 chr3R_20701721_20701722;chr3R_20701968_20701969 chr3R_20701428_20701721;chr3R_20701969_20702068 70.91 94.12 65.62 78.79 70.97 73.08 82.35 68.18 78.12 63.64 72.00 78.95 73.08 67.86 64.71 58.54 70.00 55.88 63.41 70.59 81.82 83.33 77.14 83.33 91.30 79.49 86.49 65.00 68.29 57.69 66.67 70.59 64.44 74.47 81.08 89.74 75.44 79.31 73.08 55.26 67.86 83.02 60.71 69.70 63.64 62.86 65.00 54.79 70.91 75.00 81.58 76.19 94.12 93.33 68.89 64.00 70.00 47.06 K alternative_acceptor alpha-Man-I,I_chrX_10218352_10219759,I_chrX_10218390_10219759 chrX - chrX_10218390_10219846;chrX_10218575_10219846 chrX_10218352_10219846 chrX_10219847_10219859;chrX_10218290_10218351 14.29 NA NA NA NA NA NA 16.67 12.50 NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA K intron_retention CG14446 chrX + chrX_6125020_6125075 chrX_6125019_6125020;chrX_6125075_6125076 chrX_6124766_6125019;chrX_6125076_6126833 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 2.27 0.00 0.00 0.00 0.00 0.00 3.03 0.00 5.00 0.00 3.45 0.00 2.50 0.00 0.00 0.00 0.00 NA 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.61 0.00 0.00 NA 0.00 0.00 0.00 2.99 0.00 0.00 0.00 NA NA 2.17 0.00 0.00 NA K intron_retention plx,noncoding_14842 chr3R + chr3R_1511993_1512878 chr3R_1511992_1511993;chr3R_1512878_1512879 chr3R_1511864_1511992;chr3R_1512879_1513091 100.00 90.00 88.89 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA 87.50 92.86 88.89 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 90.91 100.00 NA 94.74 94.74 100.00 NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA 100.00 94.12 NA 100.00 NA NA NA 92.86 NA NA 100.00 K cassette Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8461805_8462509 chr3L_8461805_8461966;chr3L_8462024_8462509 chr3L_8461967_8462023 chr3L_8461647_8461804;chr3L_8462510_8462593 92.86 93.33 94.74 76.92 93.33 89.47 90.91 82.61 91.67 NA 78.57 91.67 92.31 92.86 94.12 94.12 90.00 91.67 100.00 96.88 87.50 94.12 90.91 85.71 100.00 81.25 100.00 NA 68.18 92.86 100.00 NA 100.00 100.00 91.67 85.71 96.88 91.67 83.33 100.00 NA 96.55 100.00 100.00 100.00 90.00 94.74 100.00 92.86 87.50 96.00 83.33 84.62 100.00 95.65 92.31 100.00 NA K intron_retention RI_chr2L_3706792_3706842,cutlet chr2L - chr2L_3709416_3709474 chr2L_3709415_3709416;chr2L_3709474_3709475 chr2L_3709276_3709415;chr2L_3709475_3709506 2.38 0.00 0.00 4.76 NA NA 0.00 0.00 10.81 NA 0.00 11.11 0.00 6.67 14.29 7.41 0.00 0.00 8.00 5.88 NA 0.00 0.00 0.00 NA 0.00 NA NA NA 6.25 0.00 NA 9.52 0.00 NA 0.00 NA 0.00 0.00 21.43 NA 12.90 NA NA 0.00 17.65 NA 17.65 7.69 NA 0.00 NA 13.33 NA 4.76 12.50 NA 16.00 K intron_retention Arp66B chr3L - chr3L_8108689_8108781 chr3L_8108688_8108689;chr3L_8108781_8108782 chr3L_8108508_8108688;chr3L_8108782_8108888 0.00 0.00 0.00 1.03 0.00 0.00 1.53 1.11 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.47 0.36 0.44 1.54 1.63 2.83 2.83 1.27 1.04 0.00 1.32 1.14 0.00 0.00 0.00 0.64 0.00 0.00 1.15 1.85 0.40 0.00 0.00 0.60 1.01 0.00 0.00 1.01 0.85 0.00 0.00 0.00 1.49 0.73 0.00 0.00 0.42 K intron_retention gpp,I_chr3R_2271795_2272181,CG33324 chr3R + chr3R_2270033_2272181 chr3R_2270032_2270033;chr3R_2272181_2272182 chr3R_2269544_2270032;chr3R_2272182_2272281 3.81 0.00 3.85 6.12 5.00 6.25 3.77 7.69 4.71 3.23 8.33 5.00 NA 10.34 6.25 0.00 10.00 0.00 8.33 4.76 11.76 3.61 9.23 5.41 0.00 8.70 4.17 5.56 2.00 12.20 11.11 0.00 0.00 7.69 0.00 0.00 5.26 2.63 2.11 1.30 0.00 0.00 13.64 1.92 0.00 6.25 2.86 0.00 4.65 3.45 4.92 4.00 0.00 0.00 0.00 0.00 2.94 0.00 K intron_retention Best1,I_chr3R_5991957_5995913,RI_chr3R_5993184_5995905 chr3R - chr3R_5988033_5988920 chr3R_5988032_5988033;chr3R_5988920_5988921 chr3R_5987441_5988032;chr3R_5988921_5989578 4.62 4.29 3.08 6.35 7.50 5.80 1.92 6.56 5.79 1.92 4.17 6.19 5.88 7.50 4.62 7.55 7.89 0.00 0.00 4.83 2.13 2.50 4.85 4.12 4.65 0.00 6.06 7.14 0.00 2.94 6.56 2.13 9.09 8.70 2.82 3.92 3.30 5.77 5.38 7.00 0.00 3.88 7.14 5.08 4.55 4.00 5.56 3.51 5.77 3.39 5.10 5.00 0.00 3.57 3.77 5.63 0.00 1.75 K intron_retention CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789718_9789790 chr2L_9789717_9789718;chr2L_9789790_9789791 chr2L_9789681_9789717;chr2L_9789791_9789832 15.14 NA 18.75 13.64 22.22 NA 16.00 17.65 21.74 NA NA 20.83 14.29 10.00 10.00 NA 17.65 5.88 NA 0.00 NA NA NA NA NA NA 28.57 21.43 14.29 NA 7.69 NA NA 7.89 NA NA NA NA 23.08 8.70 NA 8.70 21.05 NA NA 0.00 NA 0.00 17.50 NA NA 38.46 NA NA 16.67 NA NA 0.00 K jcn_only_AA CG9855,RI_chr3R_222522_222581,RI_chr3R_222525_222604,I_chr3R_223384_223429 chr3R - chr3R_222528_222581;chr3R_222522_222581 chr3R_222525_222581 chr3R_222582_222650;chr3R_222457_222521 93.62 95.16 84.48 93.75 93.02 95.56 88.75 95.24 94.34 94.74 90.70 88.64 95.12 96.36 91.18 97.10 91.18 92.16 91.23 93.75 88.89 94.83 95.29 93.33 96.15 92.54 97.56 91.49 91.89 96.30 100.00 91.86 94.79 93.42 95.83 95.52 93.33 94.12 95.29 88.32 92.17 95.76 93.88 95.77 90.43 93.33 93.62 90.71 91.35 88.00 95.89 92.86 91.25 93.94 94.59 91.01 96.34 89.14 K intron_retention CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1662576_1662630 chr2R_1662575_1662576;chr2R_1662630_1662631 chr2R_1662507_1662575;chr2R_1662631_1662695 5.00 5.88 6.90 11.54 0.00 6.25 6.94 7.55 5.48 5.00 5.97 5.52 3.70 4.82 8.14 9.20 3.12 9.76 6.49 7.74 4.41 9.23 5.00 5.88 7.69 5.77 9.84 5.88 5.56 1.37 3.19 1.59 1.72 4.27 3.39 0.00 4.95 6.17 0.00 4.92 0.00 7.64 4.62 5.68 2.60 0.00 1.98 0.00 4.71 3.45 6.19 6.06 6.25 3.12 5.88 1.72 1.27 0.81 K intron_retention Dp,I_chr2R_9111166_9112971,REI_chr2R_9113257_9113316 chr2R + chr2R_9112663_9112971 chr2R_9112662_9112663;chr2R_9112971_9112972 chr2R_9112653_9112662;chr2R_9112972_9113071 100.00 90.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 93.33 100.00 100.00 100.00 100.00 NA 88.57 100.00 94.12 93.75 100.00 94.12 92.31 100.00 100.00 91.67 100.00 100.00 91.67 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 90.91 88.89 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 91.67 K alternative_donor RI_chr3L_17480321_17481164,Oatp74D,chr3L_17480319_17480976.0,I_chr3L_17480594_17481164,I_chr3L_17500359_17500724 chr3L + chr3L_17480290_17481164;chr3L_17480594_17481164;chr3L_17480301_17481164 chr3L_17480321_17481164 chr3L_17481165_17481264;chr3L_17480274_17480289 16.67 NA NA 16.67 NA NA 0.00 10.00 4.35 NA NA 16.67 NA NA NA 0.00 NA 0.00 NA 10.00 NA 18.18 0.00 NA 20.00 NA 20.00 16.67 20.00 NA NA NA 20.00 8.33 NA NA 22.22 NA 25.00 11.11 NA 14.29 NA 12.50 NA 25.00 NA 18.18 7.69 NA NA NA NA NA 0.00 25.00 NA 20.00 K intron_retention Past1,I_chr3R_8525058_8528541,I_chr3R_8529216_8529360 chr3R + chr3R_8525058_8529360 chr3R_8525057_8525058;chr3R_8529360_8529361 chr3R_8524958_8525057;chr3R_8529361_8529460 1.06 0.41 0.70 1.30 0.57 1.96 1.41 0.89 0.75 1.05 0.61 1.06 0.34 2.03 1.30 1.10 0.31 1.02 0.60 0.83 0.99 2.61 1.30 1.11 0.89 0.58 1.72 4.40 1.98 1.63 0.53 0.74 1.30 0.93 1.42 1.43 1.08 0.95 0.58 2.46 2.53 1.32 0.40 1.86 1.46 2.16 1.40 4.19 0.79 0.89 1.30 1.15 0.53 1.01 0.73 0.94 0.18 3.61 K alternative_acceptor kst,I_chr3L_3365752_3365816,I_chr3L_3367008_3367514 chr3L + chr3L_3365752_3365816 chr3L_3365752_3365810 chr3L_3365652_3365751;chr3L_3365817_3365916 99.56 99.16 99.60 99.44 99.56 100.00 100.00 99.74 99.66 99.37 100.00 99.80 99.53 99.64 99.63 99.65 99.51 99.60 99.55 99.75 99.60 99.42 99.54 99.48 99.10 99.53 99.20 98.77 99.40 99.29 99.53 99.36 99.16 99.72 100.00 99.70 99.75 100.00 99.59 99.66 99.55 99.27 99.49 100.00 99.60 99.77 99.49 99.54 99.80 99.25 100.00 99.29 99.66 99.49 99.38 100.00 99.70 99.49 K alternative_donor CG6664 chr3L - chr3L_17008367_17008842 chr3L_17008367_17008772 chr3L_17008241_17008366;chr3L_17008843_17008976 3.45 4.26 4.76 5.97 4.35 4.76 4.00 1.72 2.78 4.00 0.00 2.82 5.41 6.25 1.89 5.56 7.69 9.09 0.00 2.60 5.41 2.38 4.92 1.89 3.03 4.35 3.45 5.71 5.77 3.64 5.88 2.63 2.08 1.72 7.89 5.00 0.00 2.27 2.50 2.50 2.70 4.11 2.94 1.92 2.38 3.39 0.00 2.35 4.11 2.44 7.55 2.27 2.27 3.45 5.56 2.56 4.76 4.41 K intron_retention gem,I_chr2R_6015083_6015660 chr2R + chr2R_6016198_6016327 chr2R_6016197_6016198;chr2R_6016327_6016328 chr2R_6016086_6016197;chr2R_6016328_6016534 11.90 11.36 9.78 14.53 19.18 8.82 5.61 11.85 13.44 18.18 13.64 10.76 15.29 13.33 9.20 9.80 13.33 9.23 10.81 11.04 12.99 23.46 7.29 7.80 12.36 26.47 6.85 13.79 31.37 13.95 16.07 13.21 14.93 12.00 10.61 9.30 11.45 15.15 11.49 12.17 15.79 11.73 11.90 8.26 13.70 15.29 5.21 17.74 10.47 10.98 10.64 14.49 12.39 7.23 12.12 9.30 7.76 11.86 K intron_retention CG30428,RI_chr2R_21141343_21141399 chr2R + chr2R_21141285_21141342 chr2R_21141284_21141285;chr2R_21141342_21141343 chr2R_21141243_21141284;chr2R_21141343_21141407 3.45 NA NA 0.00 NA NA 0.00 9.52 3.45 NA NA 17.65 NA NA NA NA NA NA NA 10.53 NA NA 8.57 0.00 NA NA 6.67 NA NA NA NA NA 21.05 0.00 NA NA NA 0.00 NA 5.56 NA 3.45 NA 0.00 NA NA NA 0.00 7.41 NA NA NA NA NA 0.00 NA NA 7.14 N alternative_donor Hcf,I_chr4_391984_392875 chr4 + chr4_380985_381212;chr4_380602_381212;chr4_380911_381212;chr4_380607_381212 chr4_380646_381212 chr4_381213_381632;chr4_380600_380601 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 N jcn_only_AD I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545799_17545850;chr2R_17545767_17545850;chr2R_17545615_17545850;chr2R_17545781_17545850;chr2R_17545690_17545850 chr2R_17545686_17545850 chr2R_17545851_17545985;chr2R_17545613_17545614 10.30 12.33 5.71 8.99 5.88 7.87 9.47 4.59 5.17 18.52 7.81 6.96 18.64 8.62 3.57 10.34 10.14 2.94 4.11 6.49 4.17 20.00 35.14 28.21 8.70 10.81 36.84 NA 9.46 34.29 10.26 11.54 8.33 3.74 21.74 21.88 22.39 11.32 25.93 22.58 14.29 6.99 8.70 26.67 9.47 11.48 16.07 4.88 12.07 21.95 14.29 16.13 10.91 7.32 5.41 30.16 29.63 7.02 K jcn_only_AA CG5646,I_chr3R_23386250_23386484,I_chr3R_23386287_23386484 chr3R - chr3R_23386250_23386484;chr3R_23386220_23386484;chr3R_23386287_23386484 chr3R_23386237_23386484 chr3R_23386485_23386584;chr3R_23386187_23386219 70.59 66.67 72.41 82.35 90.00 67.86 87.50 92.50 76.71 NA 90.00 70.00 NA 75.00 62.50 60.00 45.00 60.00 85.71 87.30 82.14 56.00 83.93 76.19 70.00 NA 70.18 64.00 73.68 68.75 71.64 60.00 80.95 82.61 67.44 76.92 82.09 86.21 56.10 51.06 85.00 73.68 75.00 75.44 68.97 70.59 78.38 52.78 62.79 60.61 63.04 70.00 47.62 70.59 61.90 70.59 80.77 NA K alternative_last_exon I_chrX_13751182_13777268,mamo,C_chrX_13795677_13808662,CG32613 chrX - chrX_13795677_13861302 chrX_13847260_13861302 chrX_13795516_13795676 chrX_13844355_13847259 chrX_13861303_13861364 0.00 0.00 0.00 6.25 0.00 0.00 4.76 3.33 2.78 0.00 0.00 4.00 4.55 6.67 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 5.56 0.00 NA 0.00 0.00 0.00 2.50 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Or45b chr2R + chr2R_5448108_5448164 chr2R_5448107_5448108;chr2R_5448164_5448165 chr2R_5447932_5448107;chr2R_5448165_5448263 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG6236 chr3R - chr3R_11153785_11153876 chr3R_11153813_11153876 chr3R_11153877_11153988;chr3R_11153649_11153784 1.10 2.94 0.00 0.00 NA 0.00 0.00 4.00 3.03 3.45 NA 0.00 NA NA 5.56 6.98 NA NA NA 1.30 NA 0.00 0.00 2.44 0.00 NA 3.45 3.23 0.00 1.82 0.00 0.00 0.00 2.17 0.00 3.23 3.45 0.00 0.00 1.10 0.00 0.00 NA 2.78 2.56 0.00 0.00 2.27 2.00 7.32 3.92 2.33 0.00 0.00 0.00 0.00 2.00 4.48 N intron_retention CG9338,CG31675 chr2L + chr2L_20866001_20866935 chr2L_20866000_20866001;chr2L_20866935_20866936 chr2L_20866936_20867640 6.90 NA NA NA NA NA NA NA 23.53 NA NA 7.14 NA NA NA NA NA NA NA 5.88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA K intron_retention CG11875,I_chr3R_21078958_21079044 chr3R + chr3R_21074304_21074360 chr3R_21074303_21074304;chr3R_21074360_21074361 chr3R_21073895_21074303;chr3R_21074361_21074828 11.11 3.45 0.00 16.67 10.53 16.67 4.76 0.00 1.89 NA 21.05 6.38 4.35 7.69 8.89 3.12 9.52 22.22 8.00 14.29 0.00 24.14 14.63 13.89 23.53 19.05 14.71 21.74 13.79 11.11 31.82 12.20 11.63 11.43 3.57 29.41 4.08 10.00 12.07 9.23 20.51 10.42 8.33 7.50 14.29 12.73 11.63 14.81 7.27 10.42 7.69 5.00 0.00 13.89 6.67 16.00 11.11 11.11 K alternative_acceptor CG15118,I_chr2R_15024324_15024455 chr2R - chr2R_15023758_15023827 chr2R_15023761_15023827 chr2R_15023828_15024134;chr2R_15023444_15023757 97.37 96.00 100.00 96.67 100.00 86.67 100.00 93.33 98.08 100.00 100.00 89.66 94.74 100.00 100.00 95.00 94.12 100.00 94.12 95.56 100.00 97.92 94.87 100.00 100.00 100.00 97.37 96.97 96.43 100.00 94.12 100.00 97.78 100.00 100.00 96.00 98.39 96.00 97.37 98.31 95.45 97.30 100.00 95.12 94.44 96.55 94.12 95.45 88.89 100.00 96.55 100.00 100.00 100.00 100.00 96.77 97.44 93.33 K intron_retention RhoGAP68F,RI_chr3L_12133229_12134100 chr3L + chr3L_12132052_12133062 chr3L_12132051_12132052;chr3L_12133062_12133063 chr3L_12131974_12132051;chr3L_12133063_12133228 0.00 0.00 0.00 1.89 0.00 0.00 2.68 0.00 2.60 0.00 0.00 0.00 0.00 1.72 1.52 2.30 0.00 0.00 0.00 0.00 0.00 5.26 2.56 0.00 3.85 0.00 0.00 0.00 5.88 0.00 3.51 0.00 2.56 2.22 NA 0.00 0.00 0.00 0.00 0.00 5.56 2.04 3.70 0.00 2.94 0.00 0.00 2.33 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 K intron_retention CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_264212_264259 chr4_264211_264212;chr4_264259_264260 chr4_263892_264211;chr4_264260_264374 4.44 3.64 9.09 13.73 4.44 6.35 7.46 9.09 3.28 0.00 3.70 3.60 10.53 6.82 8.93 9.09 3.77 7.14 3.85 3.87 5.08 7.41 3.12 0.00 7.41 13.16 2.38 NA 0.00 3.33 5.38 0.00 0.00 6.67 0.00 NA 6.56 0.00 1.67 2.60 5.26 6.80 9.52 8.11 6.25 0.00 0.00 3.23 7.34 8.00 0.00 0.00 0.00 6.52 9.46 4.17 2.94 9.09 N intron_retention eIF-1A,I_chr3R_14106104_14107415,I_chr3R_14106955_14107415 chr3R + chr3R_14100864_14101131 chr3R_14100863_14100864;chr3R_14101131_14101132 chr3R_14100759_14100863;chr3R_14101132_14101148 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 41.67 100.00 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention Axs,RI_chrX_16575605_16575790,RI_chrX_16575870_16575942 chrX - chrX_16575605_16575942 chrX_16575604_16575605;chrX_16575942_16575943 chrX_16575505_16575604;chrX_16575943_16576042 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 5.88 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA 9.09 3.85 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention mod(mdg4),EI_chr3R_17202755_17203009,REI_chr3R_17202848_17203009,EI_chr3R_17202924_17203009 chr3R - chr3R_17202799_17203009 chr3R_17202798_17202799;chr3R_17203009_17203010 chr3R_17202748_17202798;chr3R_17203010_17203090 0.00 2.38 0.00 3.08 0.00 0.00 5.36 0.00 1.19 0.00 0.00 1.00 0.00 0.00 0.00 1.92 0.00 0.00 4.26 2.50 0.00 2.22 0.87 0.00 2.70 0.00 0.00 0.00 10.53 0.00 0.00 0.00 0.00 4.41 3.92 0.00 0.00 1.39 6.52 1.39 0.00 1.45 5.88 1.23 0.00 4.76 0.00 0.00 1.00 0.00 4.00 1.80 5.00 4.55 0.00 0.00 4.65 0.00 K alternative_acceptor Dp,I_chr2R_9111166_9112971,REI_chr2R_9113257_9113316 chr2R + chr2R_9113257_9113316 chr2R_9113257_9113313 chr2R_9113201_9113256;chr2R_9113317_9113416 88.73 90.32 97.06 89.47 86.21 84.62 79.55 87.50 85.71 84.00 90.00 88.73 79.31 82.14 91.67 94.29 91.67 95.00 73.91 92.21 84.00 86.49 90.91 88.89 96.43 95.24 88.37 93.75 82.61 90.00 100.00 95.65 93.10 86.27 95.83 93.75 82.98 85.71 86.76 92.11 96.67 90.00 89.47 90.24 84.62 88.57 87.50 84.44 86.67 89.66 82.93 85.71 85.71 92.59 85.71 83.87 73.33 95.56 K intron_retention SPoCk,I_chr3L_22776339_22776519,I_chr3L_22777865_22778359 chr3L + chr3L_22766817_22768074 chr3L_22766816_22766817;chr3L_22768074_22768075 chr3L_22766783_22766816;chr3L_22768075_22768237 93.75 93.75 90.91 78.95 100.00 90.91 92.31 93.33 95.83 93.33 88.89 92.50 100.00 NA 92.86 92.31 NA NA 100.00 95.92 NA NA 95.45 100.00 100.00 93.33 100.00 NA 96.15 92.86 100.00 NA 100.00 100.00 90.91 95.83 85.71 90.00 87.50 100.00 100.00 100.00 100.00 93.33 NA 95.00 100.00 89.66 91.67 NA 95.24 100.00 90.00 NA 93.33 NA NA 91.67 K intron_retention CG8594 chr2R + chr2R_8459883_8460005 chr2R_8459882_8459883;chr2R_8460005_8460006 chr2R_8459617_8459882;chr2R_8460006_8460110 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG14408,RI_chrX_14722065_14722693 chrX - chrX_14722065_14723168 chrX_14722065_14722693 chrX_14721965_14722064;chrX_14723169_14724380 12.50 22.22 NA 37.50 NA NA 40.00 14.29 11.76 NA 7.69 20.00 14.29 30.00 7.69 22.22 16.67 22.22 9.09 17.65 11.11 16.67 11.11 12.50 NA 11.11 10.00 NA NA 6.67 7.69 NA 7.41 13.04 18.18 27.27 10.00 16.67 0.00 17.65 18.18 7.69 10.00 18.18 12.50 7.14 0.00 42.86 10.53 7.69 7.69 9.09 NA 7.69 22.22 12.50 14.29 5.56 K jcn_only_AA stv chr3L + chr3L_13471583_13474135 chr3L_13471583_13474132 chr3L_13470717_13471582;chr3L_13474136_13474235 34.78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 34.78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor I_chr2R_7171366_7171418,fbl6,dare chr2R - chr2R_7176066_7176897;chr2R_7176066_7177174 chr2R_7176066_7176572 chr2R_7175150_7176065;chr2R_7177175_7177253 23.53 22.22 31.58 23.53 30.00 23.53 22.22 20.59 28.95 27.27 60.00 41.38 14.29 28.57 25.00 29.63 11.76 21.43 21.74 20.45 25.00 30.77 19.23 12.50 23.08 21.43 21.74 33.33 21.43 23.53 15.79 36.36 30.77 24.14 18.75 33.33 31.82 20.00 20.00 30.77 33.33 17.65 42.86 23.53 25.00 23.08 20.00 31.82 23.08 28.57 21.74 22.22 50.00 27.27 18.52 20.00 28.57 33.33 K alternative_donor arm,I_chrX_1790787_1794076,I_chrX_1793073_1793336,I_chrX_1793073_1793350,I_chrX_1793073_1793389,I_chrX_1793073_1793734,I_chrX_1793073_1794406,RI_chrX_1795648_1795745,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1793073_1793794;chrX_1793073_1793413 chrX_1793073_1793431 chrX_1793013_1793072;chrX_1793795_1793834 16.67 0.00 22.22 20.00 0.00 16.67 0.00 9.09 21.43 0.00 33.33 30.00 NA 28.57 22.22 0.00 0.00 0.00 25.00 20.00 0.00 36.36 36.36 44.44 20.00 40.00 20.00 14.29 0.00 20.00 40.00 0.00 28.57 26.67 16.67 NA 25.00 0.00 25.00 16.67 0.00 23.08 16.67 21.43 0.00 15.38 40.00 0.00 14.29 12.50 0.00 33.33 0.00 0.00 25.00 50.00 0.00 0.00 K intron_retention Sra-1 chr3R + chr3R_11159318_11159387 chr3R_11159317_11159318;chr3R_11159387_11159388 chr3R_11158991_11159317;chr3R_11159388_11161219 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.55 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.56 0.63 0.55 0.00 1.64 0.00 0.00 0.59 0.00 0.52 1.18 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.31 0.37 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG11138 chrX - chrX_12467848_12475604 chrX_12467893_12475604 chrX_12475605_12477211;chrX_12467758_12467847 12.50 12.00 17.65 6.67 6.67 6.25 NA 15.38 10.81 8.33 12.50 13.51 NA 15.00 12.50 11.11 17.65 14.29 6.67 17.65 20.00 18.92 11.90 11.11 14.29 40.00 8.33 12.50 NA 11.54 15.38 NA 3.70 15.15 22.22 38.46 9.43 14.29 12.50 15.62 NA 8.77 5.26 14.81 16.67 6.67 13.64 11.11 12.82 6.25 5.41 10.00 10.00 12.50 4.35 4.35 15.79 23.53 K alternative_donor rin,I_chr3R_9476825_9476895 chr3R + chr3R_9476782_9476895 chr3R_9476825_9476895 chr3R_9476896_9476995;chr3R_9476725_9476781 0.62 0.50 0.00 1.05 0.63 0.00 0.47 0.37 0.65 2.27 0.00 0.00 0.00 0.00 0.00 1.11 0.00 1.12 0.61 0.72 0.00 0.87 0.00 0.45 0.70 0.70 2.03 0.62 6.25 0.47 1.35 0.93 1.09 1.08 0.00 1.40 0.62 1.06 0.41 0.65 0.00 0.95 1.55 1.53 0.00 3.12 0.00 1.72 0.63 0.00 0.42 0.75 0.00 2.92 0.51 0.00 0.98 0.00 K intron_retention AnnIX,I_chr3R_16895383_16895999 chr3R + chr3R_16894742_16895999 chr3R_16894741_16894742;chr3R_16895999_16896000 chr3R_16894560_16894741;chr3R_16896000_16896025 10.39 10.61 8.45 33.33 15.15 12.12 25.00 10.39 10.16 3.85 12.00 5.45 33.33 15.38 14.58 9.86 15.79 10.71 11.90 11.43 6.06 6.11 12.15 10.34 15.79 14.81 18.31 24.32 7.37 11.29 10.91 4.84 5.31 14.75 12.07 4.52 5.61 5.26 6.96 10.91 10.53 11.93 10.26 5.68 2.90 6.57 5.30 12.20 8.16 6.31 8.25 11.48 6.35 8.43 18.52 4.44 4.81 9.52 K intron_retention CG42593,F_chrX_7841357_7841447 chrX + chrX_7834757_7834815 chrX_7834756_7834757;chrX_7834815_7834816 chrX_7834528_7834756;chrX_7834816_7835228 19.19 16.00 23.53 18.75 19.05 17.39 21.74 17.86 16.88 NA 15.79 10.20 24.24 21.43 28.12 28.57 9.09 25.93 21.05 12.50 14.81 18.18 19.15 20.59 0.00 8.70 10.81 17.65 18.18 7.69 17.39 50.00 26.67 10.00 5.88 8.70 19.35 12.50 12.82 20.83 35.71 19.23 10.00 19.35 40.00 31.82 25.00 26.92 19.67 46.15 21.05 33.33 35.71 13.33 13.89 25.00 50.00 31.58 N intron_retention Neu3,F_chr3R_10498229_10498337 chr3R - chr3R_10496565_10498144 chr3R_10496564_10496565;chr3R_10498144_10498145 chr3R_10496222_10496564;chr3R_10498145_10498228 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor nct,I_chr3R_20679262_20679308 chr3R + chr3R_20679809_20680083 chr3R_20679809_20679946 chr3R_20679598_20679808;chr3R_20680084_20680151 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 98.91 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.06 100.00 K alternative_acceptor Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21124522_21125346 chr2L_21124522_21125316 chr2L_21124443_21124521;chr2L_21125347_21125439 25.45 30.56 22.22 35.71 32.43 23.91 13.58 21.74 29.27 21.88 16.67 50.00 28.21 31.71 22.45 17.39 20.59 17.50 33.33 24.39 8.89 36.36 24.53 23.91 30.56 36.59 25.00 35.29 29.17 31.43 26.53 21.43 26.32 22.97 19.35 37.50 23.08 31.71 28.07 25.45 31.58 27.85 20.00 32.65 31.82 21.62 34.62 30.00 19.63 18.52 29.82 29.41 6.67 42.86 22.45 14.29 18.92 15.38 K alternative_last_exon Nf1 chr3R + chr3R_21819207_21820288 chr3R_21819207_21819386 chr3R_21820289_21821459 chr3R_21819387_21819934 chr3R_21819041_21819206 42.86 35.00 45.00 48.21 40.00 28.57 54.55 42.11 43.10 50.00 52.94 35.71 36.67 37.04 34.78 39.34 44.44 44.44 30.30 45.45 46.15 66.67 68.00 50.00 58.33 37.50 52.63 77.78 35.71 41.67 50.00 31.25 42.86 44.90 53.33 66.67 61.54 44.44 38.46 43.33 41.67 39.53 40.91 47.37 33.33 45.83 47.06 29.17 34.62 41.18 50.00 41.67 50.00 37.50 40.00 40.00 41.18 19.05 K intron_retention Ac3,I_chr2L_21635211_21637957,I_chr2L_21643253_21646594 chr2L + chr2L_21641325_21641378 chr2L_21641324_21641325;chr2L_21641378_21641379 chr2L_21641249_21641324;chr2L_21641379_21641604 2.94 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.88 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA K alternative_acceptor CG1347 chr3R + chr3R_1503487_1503739 chr3R_1503487_1503735 chr3R_1503387_1503486;chr3R_1503740_1505431 100.00 100.00 94.74 100.00 100.00 100.00 94.74 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 96.15 100.00 97.44 100.00 93.75 93.33 100.00 93.75 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 95.00 NA 97.30 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 88.89 100.00 K intron_retention Rbp2,I_chrX_16343528_16343906 chrX + chrX_16344535_16345307 chrX_16344534_16344535;chrX_16345307_16345308 chrX_16344347_16344534;chrX_16345308_16345592 3.24 3.02 10.00 2.70 3.77 0.00 2.60 3.91 5.03 5.40 10.87 1.75 0.00 0.00 5.66 8.57 2.78 6.82 0.00 1.78 11.90 1.56 2.14 3.36 2.03 5.41 3.78 1.20 6.55 3.59 9.09 3.33 3.27 1.76 1.81 1.50 4.22 4.04 2.97 1.27 1.92 3.02 4.76 6.76 3.12 3.47 2.38 3.65 3.15 1.23 2.83 4.72 4.64 3.24 1.64 3.21 5.26 5.62 K alternative_acceptor cno,I_chr3R_999718_999986,I_chr3R_999737_999777 chr3R - chr3R_999718_999777 chr3R_999737_999777 chr3R_999778_999877;chr3R_999637_999717 0.61 0.00 0.00 1.32 2.00 0.00 0.95 1.59 0.66 0.00 0.00 1.03 0.00 2.04 0.00 0.00 2.56 0.00 0.00 0.61 0.00 0.00 0.69 0.00 0.00 0.00 1.00 2.24 1.01 0.00 0.00 0.00 1.27 0.00 1.56 1.05 0.68 1.39 0.63 0.00 0.00 0.83 0.00 1.19 0.00 1.41 1.63 0.00 1.01 0.59 0.74 0.00 1.32 0.00 1.54 1.09 0.89 0.00 K alternative_donor CG3631 chr3R + chr3R_10705483_10705553 chr3R_10705488_10705553 chr3R_10705554_10705765;chr3R_10705178_10705482 18.18 NA NA 25.00 NA NA NA 13.33 18.18 NA NA 5.56 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA 18.18 NA NA NA NA NA NA NA NA NA N jcn_only_AD Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11835112_11835624;chr2R_11835112_11835509 chr2R_11835112_11835668 chr2R_11834432_11835111;chr2R_11835669_11836215 8.70 8.93 12.61 8.64 8.18 8.97 3.30 5.77 4.96 7.48 10.00 9.90 17.74 10.26 7.14 11.83 4.82 8.05 6.38 10.40 8.54 10.65 9.27 9.45 3.57 1.14 12.09 8.14 5.83 10.83 5.81 8.89 11.48 8.70 12.69 7.46 9.52 7.57 8.22 8.57 4.72 9.61 5.88 5.31 10.89 13.56 7.00 9.38 4.79 13.71 8.33 10.66 13.56 9.21 4.39 10.28 5.38 8.70 K alternative_donor CG15073 chr2R + chr2R_14594434_14594602 chr2R_14594521_14594602 chr2R_14594603_14594797;chr2R_14594410_14594433 100.00 83.33 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA NA NA 85.71 100.00 91.67 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 88.89 NA 85.71 100.00 100.00 NA 100.00 NA 85.71 100.00 88.89 100.00 K intron_retention CG18228 chr3R - chr3R_4087322_4087522 chr3R_4087321_4087322;chr3R_4087522_4087523 chr3R_4087312_4087321;chr3R_4087523_4087669 45.00 54.55 33.33 53.85 NA 26.67 48.28 50.00 47.62 NA 35.71 48.15 47.06 45.00 50.00 41.18 50.00 45.45 36.36 52.38 41.67 NA NA 31.25 NA 36.36 28.57 35.71 NA NA 28.00 NA NA 45.16 53.85 NA NA NA NA 50.00 NA 37.50 50.00 NA NA 50.00 NA NA 38.24 45.00 50.00 41.67 50.00 36.36 26.32 42.86 40.00 38.46 K intron_retention CG6838,I_chr3L_22709306_22709668 chr3L - chr3L_22710181_22710325 chr3L_22710180_22710181;chr3L_22710325_22710326 chr3L_22710071_22710180;chr3L_22710326_22710385 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.12 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG7203,LKR,I_chr2L_7795654_7795717 chr2L - chr2L_7794527_7794591 chr2L_7794526_7794527;chr2L_7794591_7794592 chr2L_7794148_7794526;chr2L_7794592_7794768 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon Pop2,RI_chr3L_11992097_11993849 chr3L - chr3L_11992097_11993849 chr3L_11993791_11993849 chr3L_11990125_11992096 chr3L_11992711_11993790 chr3L_11993850_11993949 98.65 97.37 98.65 98.18 98.11 98.28 98.15 97.92 96.97 100.00 98.21 99.13 97.96 96.43 98.63 97.56 100.00 100.00 98.41 97.16 96.49 98.32 98.21 100.00 97.06 98.61 99.08 100.00 99.05 98.63 100.00 100.00 100.00 97.83 98.44 98.73 100.00 100.00 99.10 99.20 98.97 99.21 98.18 98.00 100.00 99.13 98.57 100.00 99.10 99.18 98.96 100.00 98.57 98.63 98.63 98.82 99.00 99.01 K intron_retention CG11168,I_chr3R_20745770_20745849,I_chr3R_20745983_20746038 chr3R + chr3R_20745770_20745842 chr3R_20745769_20745770;chr3R_20745842_20745843 chr3R_20745670_20745769;chr3R_20745843_20745958 97.22 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 90.91 NA 94.44 NA NA NA NA NA NA 90.91 NA 92.31 100.00 100.00 NA NA NA NA NA 90.91 100.00 90.00 100.00 NA 87.50 NA NA NA 88.24 100.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention CG31150,Hmt-1 chr3R - chr3R_11677700_11678449 chr3R_11677699_11677700;chr3R_11678449_11678450 chr3R_11677472_11677699;chr3R_11678450_11678649 0.92 2.27 0.00 0.00 0.74 0.00 6.19 3.27 0.92 2.11 1.01 0.00 1.68 0.00 1.44 0.00 0.00 0.00 0.00 0.68 0.00 9.90 2.17 1.53 5.56 1.25 0.62 0.00 1.98 0.00 3.45 2.90 1.76 0.92 1.85 2.61 2.32 1.12 2.13 1.36 0.00 0.68 0.00 1.60 0.91 0.00 1.56 0.00 0.00 2.86 3.06 0.83 0.00 0.00 0.00 1.61 0.00 0.00 K jcn_only_AD RpL15 chr3LHet + chr3LHet_2398018_2398127;chr3LHet_2397859_2398127;chr3LHet_2397925_2398127;chr3LHet_2397992_2398127;chr3LHet_2397841_2398127;chr3LHet_2398002_2398127;chr3LHet_2397820_2398127;chr3LHet_2398053_2398127 chr3LHet_2398060_2398127 chr3LHet_2398128_2398454;chr3LHet_2397802_2397819 3.88 10.81 9.72 3.76 15.62 13.04 16.48 3.49 7.04 9.38 17.14 7.02 14.29 9.38 5.64 11.76 3.51 14.55 7.35 16.67 20.51 1.17 3.57 4.35 9.09 3.19 3.70 0.86 0.00 1.79 7.81 0.31 0.34 4.57 2.13 0.00 4.00 NA 0.00 0.28 1.65 4.81 8.99 0.00 1.74 0.95 0.00 0.96 6.53 7.41 0.00 0.00 0.36 8.70 4.27 0.00 2.38 1.80 K alternative_acceptor Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16046111,I_chr3L_16057100_16057329 chr3L + chr3L_16055963_16056187 chr3L_16055963_16056184 chr3L_16055812_16055962;chr3L_16056188_16056265 21.43 22.88 21.24 25.93 19.10 21.43 18.52 20.95 23.61 23.00 23.28 22.68 21.88 16.85 19.49 23.57 23.23 22.70 16.79 22.65 25.23 19.67 23.50 18.75 25.81 20.91 21.92 22.22 21.86 20.89 22.38 27.36 19.53 25.15 20.69 21.24 21.05 19.71 21.29 21.50 22.90 21.00 23.60 21.88 15.44 20.12 20.54 22.92 23.00 19.35 19.86 24.59 18.37 20.73 23.20 17.65 20.00 19.93 K intron_retention CG5745 chr3R + chr3R_16930532_16930603 chr3R_16930531_16930532;chr3R_16930603_16930604 chr3R_16930308_16930531;chr3R_16930604_16930835 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 1.89 0.00 10.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Rip11,E_chrX_18532733_18533695,RI_chrX_18530353_18530870,RI_chrX_18544139_18544185 chrX - chrX_18531820_18533496 chrX_18531820_18532278 chrX_18531668_18531819;chrX_18533497_18534230 75.79 75.35 75.79 81.45 72.60 73.23 75.76 78.71 72.06 68.06 76.56 72.24 72.38 77.46 72.11 84.58 65.36 73.21 71.16 79.85 74.44 86.05 82.38 75.29 72.18 70.07 75.59 80.06 71.75 82.19 73.92 79.55 85.06 72.97 81.52 81.27 66.11 76.48 72.51 79.28 81.18 71.30 71.56 72.44 75.90 76.64 83.64 78.50 70.80 81.47 80.32 70.92 76.11 83.02 70.27 77.93 75.96 77.45 K jcn_only_AA tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563485_565232;chr3R_563461_565232 chr3R_563503_565232 chr3R_565233_565290;chr3R_563195_563460 85.83 NA NA 100.00 NA NA 60.00 86.21 85.45 NA NA 86.36 NA NA 85.00 NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA 89.29 NA NA 70.97 NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA 87.80 NA NA NA NA NA 100.00 NA NA NA K jcn_only_AA CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3018018_3018163;chr2L_3018082_3018163;chr2L_3018038_3018163 chr2L_3018025_3018163 chr2L_3018164_3018185;chr2L_3017982_3018017 3.70 NA NA 3.70 NA 10.00 0.00 0.00 1.89 NA NA 0.00 NA 4.76 NA 0.00 NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA 2.17 12.00 NA 8.00 NA NA NA NA NA 6.38 4.00 3.57 NA 2.86 4.17 2.56 NA 5.00 6.82 NA NA NA NA NA 4.76 NA NA 9.09 K jcn_only_AA Pitslre,I_chr3L_20764965_20765781,I_chr3L_20764965_20766192,I_chr3L_20764965_20766212,I_chr3L_20766064_20766192,I_chr3L_20766064_20766215,RI_chr3L_20766064_20766893,I_chr3L_20766311_20766664,I_chr3L_20766311_20766893,I_chr3L_20766773_20766893 chr3L + chr3L_20764965_20765704;chr3L_20764965_20766893 chr3L_20764965_20766215 chr3L_20764896_20764964;chr3L_20766894_20766993 1.69 0.00 NA NA NA NA NA 13.64 3.64 0.00 NA 2.94 NA NA NA 8.70 NA NA NA 8.82 NA 2.70 3.03 1.69 0.00 NA 2.13 1.28 0.00 0.00 6.45 0.00 0.00 NA 2.94 0.00 1.22 4.48 4.41 3.85 0.00 2.38 NA 2.13 6.25 0.00 2.94 0.00 0.00 2.56 2.82 0.00 0.00 0.00 0.00 0.00 0.00 4.55 K intron_retention CG4250,I_chr2R_18551419_18551493,E_chr2R_18551558_18551756 chr2R + chr2R_18551419_18551493 chr2R_18551418_18551419;chr2R_18551493_18551494 chr2R_18551319_18551418;chr2R_18551494_18551557 81.66 NA NA 90.91 NA NA NA 91.67 72.73 NA NA 83.33 NA NA 42.86 88.89 NA 88.89 NA 62.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 87.50 NA 93.33 NA NA NA NA NA 60.00 80.00 NA NA NA NA NA NA NA 77.78 53.85 K alternative_acceptor CG8485,I_chr2R_10126696_10126750 chr2R - chr2R_10126690_10126955 chr2R_10126696_10126955 chr2R_10126956_10127190;chr2R_10126596_10126689 96.67 100.00 95.65 96.43 93.75 100.00 96.00 96.15 97.14 92.31 100.00 97.30 100.00 92.31 95.00 96.00 91.67 100.00 100.00 97.83 91.67 96.77 97.62 96.55 96.00 100.00 95.24 100.00 100.00 100.00 100.00 94.74 97.44 96.00 96.55 96.67 96.77 95.45 96.77 96.30 100.00 97.37 94.12 100.00 100.00 100.00 93.33 96.30 96.88 100.00 94.12 96.00 91.67 94.44 86.36 100.00 86.67 100.00 K alternative_donor exba,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1425890_1426009;chr3R_1425890_1426209 chr3R_1425890_1426125 chr3R_1425790_1425889;chr3R_1426210_1426225 12.50 12.50 10.00 7.14 16.67 12.50 18.75 5.26 7.69 28.57 16.67 16.67 14.29 8.33 11.11 3.70 12.50 18.18 7.14 5.56 20.00 NA 6.67 10.00 16.67 12.50 14.29 20.00 30.00 14.29 15.38 30.00 NA 16.67 10.00 14.29 16.67 20.00 25.00 13.33 33.33 11.11 8.33 7.14 33.33 5.88 16.67 20.00 3.85 11.11 8.33 12.50 0.00 25.00 11.11 12.50 25.00 12.50 K intron_retention CdGAPr,fs(2)ltoPP43,E_chr2L_19794633_19794811 chr2L - chr2L_19794309_19794582 chr2L_19794308_19794309;chr2L_19794582_19794583 chr2L_19793486_19794308;chr2L_19794583_19794632 95.35 90.00 100.00 97.09 96.55 96.43 96.43 93.85 94.51 96.67 90.91 94.52 100.00 95.35 97.44 90.48 97.14 96.67 94.74 96.61 94.74 93.51 93.62 97.30 100.00 96.97 95.92 90.70 93.94 98.33 93.94 94.94 95.39 95.77 96.77 97.56 94.00 96.43 96.77 90.28 94.29 97.30 93.75 93.02 90.79 87.84 97.30 95.19 98.59 90.24 88.89 96.00 95.65 93.10 95.24 89.19 96.00 95.24 K intron_retention CG5168 chr2L + chr2L_10424671_10424733 chr2L_10424670_10424671;chr2L_10424733_10424734 chr2L_10424544_10424670;chr2L_10424734_10424930 0.00 0.00 0.00 0.92 0.00 0.00 0.33 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Galpha49B,I_chr2R_8501587_8501648,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500357_8503411;chr2R_8500390_8503411 chr2R_8500357_8501071,chr2R_8500390_8501071;chr2R_8501851_8503411 chr2R_8501072_8501850 chr2R_8500333_8500356;chr2R_8503412_8503586 45.93 45.00 51.28 35.16 27.78 37.14 53.25 53.06 45.93 43.48 40.48 83.33 52.00 50.82 43.75 61.22 72.22 53.57 51.79 39.33 48.57 57.14 39.71 42.86 41.18 54.76 41.07 25.00 40.62 27.45 50.00 57.14 38.10 54.84 60.61 61.29 26.92 35.29 36.36 53.12 63.16 55.26 58.14 25.97 47.06 51.22 40.91 55.77 52.69 34.62 43.86 54.05 42.86 40.00 35.94 38.46 41.67 68.18 K jcn_only_AD tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5960163;chr3R_5959310_5960101;chr3R_5959310_5959789;chr3R_5959310_5960049;chr3R_5959310_5960182;chr3R_5959310_5960026;chr3R_5959310_5960158;chr3R_5959310_5959679 chr3R_5959310_5960041 chr3R_5958937_5959309;chr3R_5960183_5960224 3.16 0.00 0.00 2.38 0.00 2.86 2.86 3.70 1.65 19.05 12.50 1.30 1.72 3.70 6.38 4.59 2.17 3.45 6.15 3.30 3.23 0.00 6.82 6.90 3.70 0.00 0.00 0.00 9.68 9.09 1.85 NA 0.00 3.16 9.09 0.00 NA NA NA 0.00 0.00 0.00 3.64 6.00 0.00 8.82 NA 7.69 5.38 3.85 7.50 0.00 NA NA 2.44 0.00 NA 11.11 K intron_retention CG31855 chr2L + chr2L_13369324_13369385 chr2L_13369323_13369324;chr2L_13369385_13369386 chr2L_13369210_13369323;chr2L_13369386_13370334 17.33 15.79 19.51 30.49 33.33 21.43 21.92 25.00 21.79 25.00 24.14 18.28 5.26 16.22 7.32 15.38 17.24 15.62 21.21 20.00 14.29 10.91 28.00 22.22 30.00 35.29 42.22 37.93 48.15 8.33 15.22 11.11 28.00 13.89 10.64 15.00 6.06 20.00 18.18 16.28 38.10 20.83 13.51 20.00 0.00 14.08 16.67 15.79 17.33 16.36 14.71 25.00 13.46 21.54 20.45 17.24 3.66 15.79 K intron_retention CG33558,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2817604_2817753 chr2R_2817603_2817604;chr2R_2817753_2817754 chr2R_2817460_2817603;chr2R_2817754_2817762 0.99 0.00 7.69 4.76 NA 0.00 0.00 19.05 7.41 0.00 0.00 5.56 NA 9.09 7.41 9.09 0.00 NA 14.29 7.14 NA 0.00 3.19 2.25 0.00 NA 2.56 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 3.37 1.49 3.39 NA 1.47 0.00 0.99 1.75 1.72 5.77 0.00 2.00 8.33 0.00 0.00 0.00 1.45 2.27 0.00 K intron_retention mld chr3R + chr3R_20415155_20416293 chr3R_20415154_20415155;chr3R_20416293_20416294 chr3R_20415118_20415154;chr3R_20416294_20417143 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA K alternative_acceptor Vha44,I_chr2R_12220926_12223455 chr2R - chr2R_12216156_12216921 chr2R_12216420_12216921 chr2R_12216922_12217419;chr2R_12216058_12216155 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_donor I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545799_17545850;chr2R_17545767_17545850;chr2R_17545615_17545850;chr2R_17545781_17545850;chr2R_17545686_17545850 chr2R_17545690_17545850 chr2R_17545851_17545985;chr2R_17545613_17545614 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor I_chr2R_13460029_13460240,Dcr-2,I_chr2R_13466001_13466061,I_chr2R_13466001_13466072 chr2R - chr2R_13466001_13466058;chr2R_13466001_13466061 chr2R_13466001_13466072 chr2R_13465901_13466000;chr2R_13466073_13466161 7.69 0.00 3.70 17.39 0.00 6.67 13.89 2.78 2.04 9.09 6.67 2.70 5.00 5.56 0.00 12.90 8.33 6.25 5.26 8.11 0.00 11.54 0.00 13.64 8.33 10.53 13.33 10.53 6.67 12.50 15.62 20.00 6.67 0.00 7.69 0.00 0.00 7.69 6.67 10.00 14.29 12.20 11.11 4.76 0.00 21.43 9.09 9.09 2.63 7.69 0.00 5.56 0.00 14.29 11.11 12.50 0.00 8.33 K jcn_only_AA Chro,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22869485_22869556 chr3L_22869491_22869556 chr3L_22869557_22870488;chr3L_22868224_22869484 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 98.11 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 K jcn_only_AA pgant5,I_chr2L_5078418_5078461,I_chr2L_5079575_5093241 chr2L - chr2L_5078401_5078461 chr2L_5078418_5078461 chr2L_5078462_5078561;chr2L_5078318_5078400 0.82 0.00 0.00 4.13 1.39 0.00 2.13 0.60 1.50 1.59 0.00 1.12 2.11 2.02 0.82 0.69 0.00 3.09 0.98 0.54 0.00 1.11 0.00 1.74 6.41 1.49 0.00 3.33 0.00 1.10 2.53 1.75 0.69 0.00 0.96 0.00 0.00 1.12 1.38 1.18 0.00 0.53 0.00 0.00 1.56 2.04 1.64 0.00 0.52 7.69 0.00 0.00 0.00 0.00 0.95 0.00 0.00 1.22 K intron_retention Amun,I_chrX_11607839_11608272,I_chrX_11607842_11608105,I_chrX_11607842_11608125,RI_chrX_11607842_11608272 chrX - chrX_11607839_11608507 chrX_11607838_11607839;chrX_11608507_11608508 chrX_11607788_11607838;chrX_11608508_11608588 9.19 NA NA NA NA NA NA NA 5.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.88 NA NA NA NA 20.00 NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA K intron_retention Dystrophin,noncoding_17759,I_chr3R_15289404_15290179 chr3R + chr3R_15289362_15290221 chr3R_15289361_15289362;chr3R_15290221_15290222 chr3R_15289350_15289361;chr3R_15290222_15290279 90.91 NA NA 91.67 NA NA 100.00 93.33 84.21 NA NA 100.00 90.00 88.89 NA 93.75 100.00 NA NA 84.62 NA NA 88.89 NA NA NA NA NA NA NA 90.91 NA 88.89 75.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 91.67 NA NA NA NA NA 90.91 NA NA NA K intron_retention l(1)G0230 chrX + chrX_10107805_10108131 chrX_10107804_10107805;chrX_10108131_10108132 chrX_10107593_10107804;chrX_10108132_10108340 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette Caps,I_chr4_1249410_1250827,I_chr4_1250965_1254496,I_chr4_1252217_1252262 chr4 + chr4_1250965_1254496 chr4_1250965_1252028;chr4_1252217_1252272;chr4_1252563_1254496 chr4_1252029_1252216;chr4_1252273_1252562 chr4_1250870_1250964;chr4_1254497_1254507 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 K intron_retention RI_chr3R_19759126_19759198,Gdh,E_chr3R_19762765_19768309 chr3R - chr3R_19764278_19768315 chr3R_19764277_19764278;chr3R_19768315_19768316 chr3R_19764176_19764277;chr3R_19768316_19768409 34.78 21.43 53.33 26.83 45.45 50.00 39.13 24.53 37.93 31.03 37.50 36.54 25.00 52.63 48.39 45.45 36.00 27.59 45.45 32.14 50.00 31.91 37.04 31.25 25.93 31.25 34.78 60.00 11.11 62.50 34.62 15.38 47.89 44.44 63.64 23.26 32.43 21.74 27.78 39.02 41.67 40.98 35.71 11.43 24.00 33.33 39.13 68.42 42.55 13.33 28.57 30.77 29.41 37.50 26.92 20.00 27.27 65.38 K alternative_acceptor loj,F_chr3L_6089225_6089305 chr3L + chr3L_6088118_6088212 chr3L_6088118_6088192 chr3L_6088112_6088117;chr3L_6088213_6088443 80.00 NA NA 71.43 NA NA 87.50 38.46 83.33 NA NA 90.00 NA NA NA 80.00 NA NA 60.00 85.71 NA NA NA NA NA 87.50 NA NA NA NA NA NA NA 63.64 NA NA NA NA NA 100.00 NA 53.33 NA NA 62.50 87.50 NA 100.00 55.56 NA NA NA NA NA 50.00 NA NA NA K intron_retention Rm62 chr3R - chr3R_1830849_1830927 chr3R_1830848_1830849;chr3R_1830927_1830928 chr3R_1829739_1830848;chr3R_1830928_1831019 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 2.27 0.00 NA 4.76 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.45 NA NA 1.72 1.52 0.00 NA 5.77 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG4589,I_chr2R_20402394_20402462,I_chr2R_20402394_20402706 chr2R - chr2R_20400695_20402753 chr2R_20400695_20402058;chr2R_20402394_20402753 chr2R_20402059_20402393 chr2R_20398382_20400694;chr2R_20402754_20402806 100.00 100.00 100.00 82.93 96.00 100.00 95.89 94.12 100.00 100.00 100.00 97.65 100.00 100.00 97.83 94.64 100.00 88.24 100.00 100.00 96.43 100.00 100.00 100.00 100.00 97.73 100.00 98.36 100.00 100.00 98.25 100.00 98.53 98.61 97.14 100.00 100.00 100.00 100.00 100.00 97.96 98.70 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 K alternative_donor cryptocephal,noncoding_4181,I_chr2L_21311307_21311752,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21311033_21311752;chr2L_21311307_21311752;chr2L_21311532_21311752 chr2L_21311215_21311752 chr2L_21311753_21311852;chr2L_21310948_21311032 0.23 0.00 0.33 0.06 0.00 0.00 0.16 0.12 0.00 0.00 0.28 0.08 0.00 0.00 0.00 0.37 0.00 0.00 0.23 0.42 0.24 0.00 0.00 0.30 0.33 0.00 0.25 2.03 0.33 0.94 0.00 0.45 0.58 0.14 0.00 0.37 0.43 0.00 1.52 0.92 0.00 0.09 0.00 0.24 1.16 0.41 0.00 0.24 0.24 0.30 0.91 0.00 0.56 0.43 0.00 0.33 0.29 0.00 K intron_retention RI_chr3R_7061265_7061322,CG31388 chr3R + chr3R_7063708_7063774 chr3R_7063707_7063708;chr3R_7063774_7063775 chr3R_7063536_7063707;chr3R_7063775_7064323 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA 44.44 NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 0.00 K alternative_acceptor mod(mdg4),EI_chr3R_17202755_17203009,REI_chr3R_17202848_17203009,EI_chr3R_17202924_17203009 chr3R - chr3R_17202799_17203009 chr3R_17202924_17203009 chr3R_17203010_17203090;chr3R_17202748_17202798 0.00 2.38 0.00 1.56 0.00 0.00 3.64 0.00 2.35 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 1.68 0.00 1.12 0.87 1.25 2.70 0.00 0.00 0.00 5.56 0.00 1.67 0.00 0.00 1.52 2.00 0.00 0.00 1.39 4.44 1.39 0.00 1.45 5.88 1.23 0.00 3.23 0.00 0.00 1.98 0.00 2.70 0.91 2.56 2.33 0.00 0.00 2.38 0.00 K intron_retention CG7139,I_chr3L_22062296_22063867,I_chr3L_22063306_22063867 chr3L - chr3L_22063263_22063867 chr3L_22063262_22063263;chr3L_22063867_22063868 chr3L_22063206_22063262;chr3L_22063868_22063967 0.00 0.00 5.26 0.00 0.00 NA 0.00 5.00 0.00 7.41 NA 13.79 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 4.35 8.00 0.00 0.00 4.35 9.09 0.00 0.00 0.00 10.00 4.17 0.00 0.00 0.00 7.41 4.76 0.00 5.33 0.00 2.94 5.88 2.86 0.00 0.00 0.00 1.67 3.23 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention mu2,I_chr3L_1945373_1945436,I_chr3L_1945382_1945647 chr3L - chr3L_1945382_1945436 chr3L_1945381_1945382;chr3L_1945436_1945437 chr3L_1945282_1945381;chr3L_1945437_1945528 0.00 0.00 0.00 5.71 NA 0.00 8.33 2.63 0.00 NA NA 0.00 0.00 NA 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 15.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 K intron_retention RpLP0 chr3L + chr3L_22069237_22069347 chr3L_22069236_22069237;chr3L_22069347_22069348 chr3L_22069220_22069236;chr3L_22069348_22069440 0.04 0.09 0.05 0.12 0.00 0.00 0.16 0.06 0.00 0.00 0.00 0.05 0.00 0.12 0.15 0.11 0.20 0.10 0.08 0.04 0.00 0.27 0.00 0.48 0.16 0.14 0.36 1.88 0.80 0.00 0.23 0.00 0.00 0.03 0.00 0.45 0.22 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.28 0.00 0.00 0.12 0.11 0.00 0.16 0.00 0.00 0.00 0.00 0.12 0.48 K alternative_donor Taz,I_chr2R_8641633_8641971,I_chr2R_8648027_8648303 chr2R - chr2R_8640859_8640932 chr2R_8640859_8640926 chr2R_8640618_8640858;chr2R_8640933_8641321 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AD Hr39,I_chr2L_21256047_21256260 chr2L + chr2L_21237347_21238280;chr2L_21237385_21238280;chr2L_21237421_21238280;chr2L_21237364_21238280;chr2L_21237397_21238280 chr2L_21237405_21238280 chr2L_21238281_21238529;chr2L_21237247_21237346 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 5.71 4.35 NA NA 0.00 NA NA NA 2.22 NA NA 0.00 0.00 NA NA 3.12 NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K jcn_only_AD CG9836,I_chr3R_4654041_4664113,I_chr3R_4749124_4756437 chr3R - chr3R_4648792_4648970;chr3R_4648792_4648989 chr3R_4648792_4648982 chr3R_4648564_4648791;chr3R_4648990_4649023 98.00 96.07 98.86 97.95 97.62 98.57 98.06 96.91 96.99 98.21 95.58 97.82 98.63 97.78 98.70 97.71 98.63 95.80 95.85 95.57 98.40 98.00 97.53 97.12 98.69 98.06 96.14 95.15 96.35 98.37 97.75 96.76 100.00 98.76 96.12 97.24 98.95 98.65 98.87 98.40 97.11 97.71 98.56 98.98 98.00 99.38 96.01 98.64 97.73 97.73 97.77 98.10 98.26 99.54 97.86 99.27 99.72 98.45 K alternative_acceptor CG14133 chr3L - chr3L_11683229_11683325;chr3L_11683239_11683325 chr3L_11683209_11683325 chr3L_11683326_11683412;chr3L_11682731_11683208 54.20 69.23 40.00 22.22 38.46 56.25 53.33 66.67 41.46 NA 43.75 41.18 70.00 70.00 9.09 56.25 58.33 44.44 63.64 36.36 50.00 NA 60.00 NA NA 25.00 NA NA NA 53.85 57.89 60.00 43.75 50.00 NA NA 52.94 54.55 30.00 60.00 NA 36.11 42.86 66.67 38.46 56.25 69.23 66.67 40.91 66.67 56.25 NA 81.25 50.00 41.18 60.00 70.83 65.38 K jcn_only_AA maf-S,CG11110 chr2R + chr2R_16528624_16528673;chr2R_16528624_16528685 chr2R_16528624_16528670 chr2R_16528563_16528623;chr2R_16528686_16529179 1.22 2.30 0.90 1.95 3.37 0.92 1.78 1.18 2.82 0.00 1.23 1.84 1.89 3.57 3.74 1.79 1.25 1.22 0.00 1.35 3.33 1.53 1.08 0.00 0.00 1.94 1.35 0.00 4.05 1.18 1.72 1.33 0.69 1.95 5.62 0.00 0.00 0.00 0.87 0.93 0.00 1.12 0.00 0.00 1.40 0.00 0.95 2.31 1.20 1.06 2.27 3.85 1.69 0.00 0.81 0.00 0.91 1.35 N alternative_acceptor CkIIalpha,I_chr3L_23092989_23093344,RI_chr3L_23094196_23095221 chr3L + chr3L_23092824_23093344;chr3L_23092824_23093319 chr3L_23092824_23092891 chr3L_23092680_23092823;chr3L_23093345_23093444 28.57 9.09 18.18 60.00 NA NA 52.63 20.00 24.00 NA NA 42.86 66.67 23.08 28.57 18.18 NA 37.50 18.18 36.36 NA NA 22.22 12.50 28.57 NA NA 33.33 NA NA 28.57 NA 28.57 28.57 14.29 40.00 NA NA NA 18.18 NA 21.43 33.33 28.57 NA NA NA NA 38.46 NA NA 16.67 NA NA 14.29 33.33 33.33 50.00 K intron_retention Pp2A-29B,I_chr2L_8367210_8367311,I_chr2L_8369561_8369715,RI_chr2L_8369761_8369827 chr2L + chr2L_8369031_8369715 chr2L_8369030_8369031;chr2L_8369715_8369716 chr2L_8368758_8369030;chr2L_8369716_8369760 0.79 0.47 1.32 0.70 0.00 0.93 0.67 0.79 0.67 0.00 0.70 1.62 1.18 1.32 1.18 2.51 0.00 0.00 0.00 1.01 0.78 0.81 0.60 1.37 0.61 0.00 0.96 2.36 0.00 1.39 1.53 0.77 3.26 1.22 0.76 1.34 1.05 0.96 1.22 0.80 0.77 0.97 1.99 0.73 1.83 1.94 0.87 0.00 0.78 0.61 1.02 0.00 0.00 0.59 1.10 0.00 0.00 0.00 K cassette CG3114,RI_chrX_168562_168685 chrX - chrX_165647_167215 chrX_165647_166589;chrX_166917_167215 chrX_166590_166916 chrX_165521_165646;chrX_167216_167420 44.44 29.41 46.67 30.77 50.00 35.71 14.29 25.00 51.72 87.50 18.18 41.67 22.22 40.00 35.00 60.00 25.00 41.67 55.56 53.12 35.71 45.45 52.38 42.86 30.00 50.00 50.00 56.25 58.82 52.63 53.85 46.15 75.00 44.00 35.71 60.00 48.15 61.54 36.36 48.28 22.22 51.72 83.33 57.14 42.86 53.85 42.86 66.67 42.86 30.00 43.75 44.44 33.33 30.00 50.00 50.00 42.86 43.48 K intron_retention CG12772 chrX + chrX_8571498_8571923 chrX_8571497_8571498;chrX_8571923_8571924 chrX_8571095_8571497;chrX_8571924_8573800 10.53 NA NA NA NA NA NA NA 0.00 NA NA 12.50 NA NA NA NA NA NA NA 10.53 NA 16.67 NA 6.25 NA NA 21.43 NA NA NA 36.36 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA K alternative_acceptor CG31033,RI_chr3R_25658089_25658914 chr3R - chr3R_25658089_25658914;chr3R_25658071_25658914 chr3R_25658095_25658914 chr3R_25658915_25659003;chr3R_25657989_25658070 12.12 6.82 11.76 36.84 13.64 9.09 35.90 7.46 12.99 18.52 6.67 11.90 18.18 12.20 10.53 29.17 15.15 10.53 7.69 9.88 13.89 14.29 18.18 5.66 20.00 31.43 17.31 10.81 12.82 10.87 14.29 10.42 14.06 13.24 8.89 37.50 13.89 8.70 11.48 6.67 19.61 11.00 12.50 10.42 15.09 9.64 10.81 7.32 15.91 11.63 12.12 14.29 9.09 11.76 10.91 7.50 12.24 12.15 K intron_retention CG1427,RI_chr3R_1427548_1427635 chr3R + chr3R_1427585_1427635 chr3R_1427584_1427585;chr3R_1427635_1427636 chr3R_1427482_1427584;chr3R_1427636_1427704 23.54 16.67 25.00 50.00 13.33 30.00 35.71 31.43 21.95 NA 50.00 26.92 19.05 25.00 44.00 28.57 22.73 6.67 12.50 28.26 14.29 17.65 30.23 19.05 30.77 33.33 37.04 35.71 20.00 26.32 56.10 24.00 22.22 23.08 25.00 59.09 29.03 20.00 18.92 16.42 41.67 18.18 20.00 22.73 13.33 25.64 20.00 37.84 25.00 25.93 16.13 19.05 10.53 16.67 21.43 18.18 20.69 40.00 K jcn_only_AA cmet chr2L - chr2L_11262421_11262485 chr2L_11262430_11262485 chr2L_11262486_11262560;chr2L_11262244_11262420 96.97 94.87 100.00 98.67 96.88 97.37 98.48 95.96 96.15 NA 97.56 96.97 100.00 97.56 91.49 97.56 95.35 95.74 95.06 99.19 95.45 100.00 100.00 100.00 NA 98.31 100.00 NA 96.77 94.87 94.55 94.29 98.41 95.20 96.67 100.00 93.94 96.67 96.15 98.00 97.22 100.00 100.00 100.00 95.12 93.48 97.92 96.61 99.15 95.74 100.00 100.00 100.00 NA 94.59 92.11 90.32 90.91 K multi_cassette CG31064,RI_chr3R_23056388_23064246,RI_chr3R_23059404_23062725,I_chr3R_23069667_23070365 chr3R - chr3R_23056388_23064246 chr3R_23056388_23058194;chr3R_23058598_23058656;chr3R_23058908_23058969;chr3R_23059404_23064246 chr3R_23058195_23058597;chr3R_23058657_23058907;chr3R_23058970_23059403 chr3R_23056292_23056387;chr3R_23064247_23064346 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 92.86 95.65 100.00 96.43 94.74 96.55 100.00 95.45 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 95.83 100.00 96.30 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 K intron_retention RI_chr2R_11577574_11577625,CG33460,CG33461,CG33462 chr2R + chr2R_11581816_11581879 chr2R_11581815_11581816;chr2R_11581879_11581880 chr2R_11581407_11581815;chr2R_11581880_11581922 0.72 0.00 0.87 1.12 0.00 1.32 1.35 0.95 0.76 0.00 0.00 1.61 0.72 0.80 0.00 0.63 0.30 0.00 1.19 0.33 0.00 0.00 0.57 1.27 0.00 1.37 1.15 0.00 4.92 1.87 2.01 0.00 3.03 1.23 0.00 2.44 0.76 0.00 0.00 0.00 3.08 0.50 0.00 0.00 0.00 1.27 0.00 2.04 1.23 0.81 0.00 0.00 0.74 0.88 0.61 0.00 1.75 2.88 K intron_retention Tequila chr3L + chr3L_9068967_9069119 chr3L_9068966_9068967;chr3L_9069119_9069120 chr3L_9068945_9068966;chr3L_9069120_9069354 0.00 0.00 0.00 11.76 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 8.70 0.00 0.00 0.00 1.47 0.00 NA 0.00 7.14 0.00 NA 5.88 NA NA 0.00 NA NA NA 0.00 NA 18.52 1.85 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K alternative_acceptor CG14881 chr3R + chr3R_12260796_12260857 chr3R_12260796_12260855 chr3R_12260742_12260795;chr3R_12260858_12260924 93.33 93.75 93.33 95.45 88.89 92.31 93.33 100.00 96.30 100.00 100.00 96.30 92.86 100.00 100.00 94.44 92.31 92.31 91.67 86.49 87.50 100.00 88.24 100.00 94.44 93.33 100.00 80.00 94.74 92.86 89.66 100.00 96.77 80.95 93.75 88.89 88.24 100.00 88.00 88.37 94.44 92.86 100.00 94.12 94.12 100.00 86.36 86.96 90.48 92.31 85.00 90.00 93.33 94.44 87.50 93.33 86.96 94.44 N alternative_donor CG14647 chr3R + chr3R_226861_227075 chr3R_227015_227075 chr3R_227076_227207;chr3R_226212_226860 2.56 2.70 1.69 4.65 2.56 0.00 1.43 3.03 2.04 0.00 0.00 6.25 2.38 3.85 3.17 1.03 2.38 0.00 3.28 2.05 1.92 8.47 2.63 2.38 7.41 0.00 1.92 2.56 4.49 3.39 4.62 2.27 4.00 2.56 2.70 3.85 2.38 2.22 1.37 4.81 3.33 2.17 2.27 2.86 2.27 3.42 2.78 0.65 3.12 4.65 3.23 2.94 3.45 2.94 0.00 4.17 0.00 2.25 K intron_retention RpS4,snoRNA:Psi28S-3327c,Syx13,RI_chr3L_13037959_13038017,CG11279 chr3L + chr3L_13036438_13036673 chr3L_13036437_13036438;chr3L_13036673_13036674 chr3L_13036266_13036437;chr3L_13036674_13037324 0.02 0.05 0.04 0.01 0.02 0.06 0.02 0.04 0.07 0.07 0.04 0.03 0.00 0.09 0.03 0.02 0.00 0.05 0.00 0.04 0.02 0.01 0.03 0.00 0.02 0.00 0.10 0.19 0.00 0.00 0.00 0.02 0.00 0.03 0.00 0.00 0.00 0.00 0.05 0.02 0.00 0.06 0.00 0.00 0.03 0.00 0.02 0.03 0.02 0.00 0.06 0.02 0.02 0.03 0.03 0.00 0.03 0.03 K alternative_last_exon mav,RI_chr4_645290_646129 chr4 - chr4_645290_646129 chr4_645568_646129 chr4_643677_645289 chr4_645398_645567 chr4_646130_646229 66.67 75.00 77.78 78.57 60.00 50.00 75.76 94.12 84.00 50.00 75.00 80.00 53.33 87.50 78.57 83.33 66.67 58.33 80.00 77.27 53.85 71.43 72.73 50.00 50.00 80.00 54.55 50.00 66.67 66.67 81.82 44.44 66.67 90.00 42.86 80.00 37.50 57.14 40.00 63.64 40.00 44.44 84.62 46.67 50.00 73.33 57.14 66.67 75.00 50.00 80.95 71.43 40.00 60.00 80.00 75.00 42.86 54.55 K intron_retention RpS25,I_chr3R_7041333_7041414,I_chr3R_7041347_7041413,I_chr3R_7041347_7041556,RI_chr3R_7044164_7044221 chr3R - chr3R_7041333_7041414 chr3R_7041332_7041333;chr3R_7041414_7041415 chr3R_7041267_7041332;chr3R_7041415_7041483 99.91 99.87 99.85 100.00 99.58 100.00 100.00 100.00 99.90 100.00 99.77 99.91 100.00 100.00 100.00 100.00 100.00 99.84 100.00 100.00 99.81 99.49 100.00 99.86 99.80 99.83 99.91 88.60 99.74 100.00 99.84 99.84 99.78 99.92 100.00 99.86 99.49 99.82 99.91 100.00 99.78 100.00 99.81 100.00 100.00 99.91 100.00 99.27 99.86 99.87 100.00 100.00 99.91 100.00 99.85 99.88 99.85 99.89 K jcn_only_AA CG9172,eIF5,EI_chrX_15885411_15885854 chrX - chrX_15880717_15880770 chrX_15880720_15880770 chrX_15880771_15880778;chrX_15879877_15880716 43.41 38.16 43.96 43.84 39.51 32.63 48.97 49.70 40.84 37.50 38.54 42.31 34.25 46.05 50.50 42.11 50.60 45.00 44.79 47.92 44.59 33.77 37.31 42.65 29.63 51.22 44.44 51.28 33.96 48.94 53.09 31.67 35.71 43.33 49.02 50.00 53.95 50.00 38.03 35.77 38.24 44.13 41.03 40.00 44.96 46.51 43.94 45.12 46.79 38.33 47.27 38.46 31.15 48.48 40.88 34.67 35.71 43.41 K jcn_only_AA CG8121,RI_chr3R_5183458_5183705 chr3R + chr3R_5161975_5162204 chr3R_5161975_5162041 chr3R_5161880_5161974;chr3R_5162205_5162441 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.94 0.00 5.26 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.38 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 2.41 NA 0.00 0.00 1.96 0.00 1.69 0.00 4.17 0.00 1.69 1.22 0.00 0.00 0.00 0.00 1.67 0.00 0.00 K intron_retention Cep135,RI_chr3L_15120510_15120565 chr3L + chr3L_15120385_15120565 chr3L_15120384_15120385;chr3L_15120565_15120566 chr3L_15120117_15120384;chr3L_15120566_15120665 6.67 NA 0.00 13.16 NA 0.00 15.00 10.71 6.45 NA NA 8.33 NA 5.56 6.67 0.00 0.00 NA 0.00 0.00 NA 14.29 12.50 13.33 NA 0.00 18.75 NA 10.00 11.76 0.00 8.33 9.09 12.50 NA 7.69 0.00 NA NA 0.00 7.41 6.90 NA 6.67 0.00 6.25 NA 0.00 0.00 9.09 0.00 NA NA NA 7.41 9.09 NA 0.00 K intron_retention CG3160,CG3149 chrX - chrX_5582203_5582254 chrX_5582202_5582203;chrX_5582254_5582255 chrX_5581958_5582202;chrX_5582255_5582437 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 4.17 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 4.55 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA NA K jcn_only_AD CG15321,I_chrX_9578185_9579504,I_chrX_9578185_9579582,I_chrX_9578185_9580671,RI_chrX_9578185_9581011 chrX - chrX_9578185_9579504;chrX_9578185_9579582 chrX_9578185_9579535 chrX_9578085_9578184;chrX_9579583_9579597 90.00 NA NA NA NA NA NA 86.67 85.00 NA NA 100.00 NA 88.46 NA 95.65 NA NA NA 87.50 NA NA 86.36 NA NA NA NA NA 87.50 86.96 90.00 NA 100.00 NA NA NA NA NA NA 97.62 NA 92.00 NA 100.00 NA NA NA 87.34 90.91 NA 90.00 NA NA NA NA NA NA 100.00 N jcn_only_AA CG14939,RI_chr2L_11812683_11813150 chr2L - chr2L_11811446_11811593 chr2L_11811500_11811593 chr2L_11811594_11812682;chr2L_11810098_11811445 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 86.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention mthl10 chr3L - chr3L_333641_333941 chr3L_333640_333641;chr3L_333941_333942 chr3L_333522_333640;chr3L_333942_334119 5.77 2.74 6.58 13.16 4.00 6.35 12.24 7.14 6.62 0.00 7.50 5.61 11.76 5.77 5.97 5.88 3.85 3.39 10.94 5.83 6.52 8.70 6.76 5.00 6.67 10.00 5.56 19.05 15.79 7.32 3.30 5.41 8.33 5.06 10.00 6.98 9.72 5.36 5.66 6.06 0.00 4.55 3.92 2.74 3.39 9.62 0.00 5.00 7.96 4.17 5.33 9.68 0.00 0.00 5.33 3.51 3.17 2.94 K intron_retention wapl,Cyp4d1 chrX - chrX_2045880_2045949 chrX_2045879_2045880;chrX_2045949_2045950 chrX_2045710_2045879;chrX_2045950_2046792 2.78 2.50 5.71 2.86 0.00 6.67 5.26 5.71 8.33 0.00 9.09 5.41 7.41 7.69 2.56 7.14 0.00 6.67 0.00 3.45 10.71 0.00 4.44 3.85 0.00 0.00 6.98 8.00 0.00 5.41 2.78 0.00 3.57 4.08 0.00 0.00 5.48 0.00 1.82 0.00 0.00 2.50 3.33 0.00 0.00 0.00 0.00 11.76 5.56 0.00 6.82 0.00 0.00 6.25 0.00 0.00 3.45 0.00 K intron_retention CG8173,I_chrX_17602681_17603175 chrX - chrX_17602681_17603214 chrX_17602680_17602681;chrX_17603214_17603215 chrX_17602581_17602680;chrX_17603215_17603275 4.35 4.84 7.27 5.63 3.77 2.13 2.38 3.51 4.80 2.56 5.88 5.66 2.70 5.26 0.00 5.68 0.00 1.79 3.77 6.19 4.17 50.00 8.82 4.11 0.00 0.00 10.45 0.00 11.76 6.12 6.98 0.00 5.56 5.63 5.08 4.00 7.14 5.36 6.67 0.00 9.38 3.23 0.00 4.35 5.00 3.92 6.35 2.63 6.67 3.77 3.95 0.00 2.56 6.25 3.85 6.25 3.85 4.55 K jcn_only_AD vir-1,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,noncoding_2764,I_chr2L_12421830_12423260 chr2L - chr2L_12421830_12423322;chr2L_12421830_12423260;chr2L_12421830_12423278 chr2L_12421830_12423333 chr2L_12421816_12421829;chr2L_12423334_12423360 3.72 5.35 2.53 4.52 4.12 3.15 4.74 5.19 5.96 3.15 7.66 3.50 4.75 6.19 2.71 2.75 6.86 2.73 4.83 2.98 6.05 4.57 4.14 2.85 3.56 3.37 4.85 4.64 4.12 4.40 2.80 2.97 3.02 4.26 2.57 7.08 5.18 3.40 1.56 4.79 3.72 4.01 5.59 3.47 3.06 2.93 3.18 3.13 3.51 4.24 2.99 4.90 3.52 3.52 2.90 4.64 4.09 2.87 K cassette SCAR,E_chr2L_10978982_10979632 chr2L + chr2L_10978707_10980444 chr2L_10978707_10979632;chr2L_10979714_10980444 chr2L_10979633_10979713 chr2L_10977898_10978706;chr2L_10980445_10981112 0.00 0.00 0.63 0.56 0.00 0.80 0.00 0.55 0.00 0.00 0.87 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.51 0.00 0.00 1.03 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.63 0.00 0.00 1.02 0.00 1.04 0.00 0.00 0.74 0.00 0.80 0.49 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.67 0.00 K intron_retention Cks85A chr3R - chr3R_4541538_4542192 chr3R_4541537_4541538;chr3R_4542192_4542193 chr3R_4541461_4541537;chr3R_4542193_4542261 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 95.83 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG11753 chr3R + chr3R_4479008_4479080 chr3R_4479008_4479077 chr3R_4478941_4479007;chr3R_4479081_4479145 97.92 100.00 97.87 100.00 98.11 97.37 98.31 100.00 98.99 100.00 95.56 97.50 97.37 96.67 97.67 97.73 97.06 97.56 97.62 98.77 97.73 97.62 94.52 98.39 100.00 97.92 98.51 96.88 97.83 100.00 100.00 97.56 98.39 100.00 91.89 100.00 95.56 98.41 98.77 98.46 97.14 98.53 96.67 96.00 96.05 98.41 98.33 97.50 100.00 97.06 98.31 97.37 97.22 98.33 95.56 98.75 100.00 98.44 N jcn_only_AA klar,I_chr3L_462559_472609,RI_chr3L_517594_539898 chr3L - chr3L_451328_452837 chr3L_451772_452837 chr3L_452838_453488;chr3L_451127_451327 94.96 96.30 95.45 100.00 94.70 95.29 91.28 93.55 94.74 100.00 93.55 96.23 96.25 96.60 96.44 100.00 95.81 89.42 94.97 100.00 100.00 83.96 94.19 93.77 90.31 95.45 95.74 89.73 94.79 91.31 94.09 91.76 89.14 95.15 94.85 96.55 95.17 94.96 94.81 92.39 93.39 94.44 95.73 94.57 93.53 94.61 96.60 91.20 95.33 96.17 92.38 91.42 96.02 97.32 93.49 96.32 97.94 95.51 K alternative_acceptor Amun,I_chrX_11607839_11608272,I_chrX_11607842_11608105,I_chrX_11607842_11608125,RI_chrX_11607842_11608272 chrX - chrX_11607839_11608590 chrX_11607842_11608590 chrX_11608591_11608810;chrX_11607788_11607838 57.09 NA 42.86 60.00 66.67 50.00 53.33 52.94 54.05 NA 55.56 50.00 NA 50.00 40.00 63.64 NA NA 42.86 64.71 NA 58.62 NA NA NA NA NA NA 70.00 48.48 66.67 58.82 44.44 58.82 69.23 55.56 46.67 NA NA 60.53 50.00 66.67 NA 63.16 69.23 50.00 NA 59.46 55.00 60.00 NA NA 61.54 NA 66.67 NA NA 51.58 K intron_retention CG18317,RI_chr2L_1718492_1723881,I_chr2L_1718904_1718995,RI_chr2L_1718904_1724234 chr2L - chr2L_1718492_1718739 chr2L_1718491_1718492;chr2L_1718739_1718740 chr2L_1718421_1718491;chr2L_1718740_1718903 94.44 92.59 86.67 96.30 100.00 96.15 90.00 90.62 91.30 97.14 95.24 95.92 100.00 100.00 96.15 100.00 100.00 100.00 100.00 97.10 94.74 86.00 95.12 88.89 92.86 95.65 93.75 96.67 86.76 86.27 85.71 97.44 93.65 95.00 82.14 87.18 98.55 91.89 94.83 84.93 94.44 87.93 92.31 94.55 91.84 89.58 96.43 92.52 97.50 91.30 93.94 93.75 94.74 90.48 96.15 94.74 92.00 94.29 K intron_retention Ada2b,RI_chr3R_4068335_4068401 chr3R - chr3R_4063905_4064452 chr3R_4063904_4063905;chr3R_4064452_4064453 chr3R_4063825_4063904;chr3R_4064453_4065328 30.00 26.67 32.14 21.05 26.67 28.57 22.22 37.04 37.25 30.43 30.00 45.71 53.33 31.82 31.58 40.91 33.33 16.67 40.00 22.64 25.00 38.81 21.74 20.00 29.17 35.29 28.00 38.89 26.53 28.57 30.00 30.56 30.36 16.67 40.00 35.90 26.32 29.03 20.37 26.32 41.67 40.48 33.33 23.68 33.33 21.57 29.17 26.42 37.50 25.00 22.58 12.00 22.73 31.03 34.62 33.33 17.65 41.94 K alternative_acceptor CG10747,RI_chr2L_20090945_20090997 chr2L - chr2L_20090940_20090997 chr2L_20090945_20090997 chr2L_20090998_20091097;chr2L_20090845_20090939 15.38 7.69 NA 15.79 NA NA 15.38 9.09 26.32 NA NA 15.00 NA NA 7.69 9.52 NA 25.00 NA 12.50 15.38 NA 0.00 NA NA NA 25.00 NA NA NA 27.78 NA NA 14.29 NA NA NA NA 25.00 NA NA 17.39 NA NA NA NA NA NA 12.50 20.00 25.00 16.67 NA NA 13.33 NA NA NA K intron_retention Tpi chr3R - chr3R_25959171_25959231 chr3R_25959170_25959171;chr3R_25959231_25959232 chr3R_25958684_25959170;chr3R_25959232_25959816 0.00 0.23 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.11 0.00 0.00 0.00 0.67 0.13 0.00 0.24 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.20 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 K intron_retention MEP-1,CG42245,noncoding_10195,CG1143 chr3L + chr3L_2636002_2637067 chr3L_2636001_2636002;chr3L_2637067_2637068 chr3L_2635863_2636001;chr3L_2637068_2637217 10.91 11.76 7.69 8.96 13.89 17.65 21.67 12.33 15.08 12.00 11.76 8.70 13.64 12.20 15.38 10.91 16.28 3.85 8.51 6.06 6.67 40.00 10.61 10.64 26.32 9.68 15.38 31.71 10.71 25.00 17.86 0.00 27.78 13.89 11.11 11.76 14.58 5.41 9.09 7.14 9.52 11.84 14.29 10.53 0.00 6.25 5.71 8.20 13.95 7.41 6.00 10.53 0.00 0.00 11.63 0.00 0.00 12.20 K intron_retention Ac3,I_chr2L_21635211_21637957,I_chr2L_21643253_21646594 chr2L + chr2L_21633916_21634419 chr2L_21633915_21633916;chr2L_21634419_21634420 chr2L_21633415_21633915;chr2L_21634420_21634609 6.62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 7.69 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 5.56 10.71 NA NA NA NA NA NA NA 20.00 7.69 NA 0.00 NA NA NA NA NA NA NA K alternative_acceptor Gel,I_chr3R_63540_64006,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_63540_64024;chr3R_63540_64006 chr3R_63540_63897 chr3R_63440_63539;chr3R_64025_64099 0.24 0.00 0.23 0.17 0.27 0.00 0.97 0.42 0.43 0.00 0.00 0.26 0.60 0.51 0.00 1.04 0.27 0.00 0.45 0.11 0.00 0.00 0.23 0.24 1.04 1.81 0.65 0.00 0.00 0.00 0.29 0.00 0.00 0.31 0.00 0.96 0.22 0.00 0.00 0.59 2.94 0.39 0.60 0.44 0.00 0.89 0.47 0.00 0.48 0.40 0.30 1.09 0.00 0.00 0.18 0.38 0.00 0.00 K cassette CG31313,REI_chr3R_10392729_10393060,I_chr3R_10394322_10394381,RI_chr3R_10400799_10401492 chr3R - chr3R_10392729_10393060 chr3R_10392729_10392886;chr3R_10393003_10393060 chr3R_10392887_10393002 chr3R_10392629_10392728;chr3R_10393061_10393148 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 91.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA 85.71 100.00 NA NA NA 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 K alternative_donor SP2637,Gint3 chr2R - chr2R_14530268_14545584 chr2R_14530268_14545580 chr2R_14529910_14530267;chr2R_14545585_14545707 20.00 23.53 NA 25.00 NA NA 16.00 20.00 12.50 23.08 21.43 22.73 NA 15.38 23.08 30.43 NA 26.67 17.65 15.38 20.00 21.88 20.83 35.71 NA 15.38 11.11 21.05 13.33 18.18 22.22 7.69 17.65 22.22 33.33 30.77 26.09 20.00 18.75 20.00 27.27 31.58 NA 13.04 NA 28.57 7.69 13.04 15.79 18.18 26.67 11.11 NA 30.77 20.00 15.38 10.53 17.65 K jcn_only_AD janA,RI_chr3R_25864678_25864966,I_chr3R_25864692_25864783,I_chr3R_25871509_25871807 chr3R - chr3R_25865129_25865198 chr3R_25865129_25865194 chr3R_25864967_25865128;chr3R_25865199_25865238 66.23 68.89 65.91 67.22 64.29 60.82 65.96 60.33 64.02 77.61 58.51 63.24 66.25 66.67 59.65 57.30 62.50 72.44 71.55 60.71 72.64 79.03 67.83 66.23 68.82 59.54 55.37 76.19 58.62 71.43 64.52 65.12 71.05 66.27 73.02 62.75 66.19 62.31 63.08 78.81 57.14 67.81 67.47 68.42 64.42 69.57 56.20 67.92 69.59 65.44 64.44 67.44 74.24 73.33 58.87 68.66 59.15 68.42 K intron_retention CG4199,I_chrX_1962457_1963822,I_chrX_1962457_1964222 chrX - chrX_1962457_1964499 chrX_1962456_1962457;chrX_1964499_1964500 chrX_1962357_1962456;chrX_1964500_1964568 7.32 12.50 11.76 29.41 NA 6.25 30.77 20.00 9.09 0.00 7.69 0.00 NA NA 17.65 13.64 NA NA 4.76 14.29 NA 0.00 0.00 7.69 0.00 7.69 16.13 10.87 6.67 10.53 9.09 12.50 9.52 4.76 4.00 10.53 7.32 0.00 0.00 4.35 12.50 0.00 NA 4.84 8.00 NA 5.71 12.00 8.33 6.67 3.23 0.00 0.00 0.00 10.00 0.00 4.35 5.56 K intron_retention Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3294636 chr2R_3294565_3294566;chr2R_3294636_3294637 chr2R_3294491_3294565;chr2R_3294637_3294736 88.89 NA NA 100.00 NA NA 90.91 93.33 78.95 NA NA 93.75 NA NA 69.23 94.44 88.89 77.78 NA 93.75 88.89 87.50 92.86 100.00 88.89 91.67 100.00 90.00 84.62 92.31 72.73 100.00 77.78 83.33 80.00 100.00 100.00 88.89 93.33 80.95 66.67 76.47 NA 91.67 NA 53.85 NA 80.00 76.47 NA 90.00 NA NA NA 100.00 NA NA 88.89 K intron_retention sqd,I_chr3R_9462248_9471474,CR33328,I_chr3R_9468150_9468236,I_chr3R_9470417_9471474 chr3R - chr3R_9462801_9468020 chr3R_9462800_9462801;chr3R_9468020_9468021 chr3R_9462777_9462800;chr3R_9468021_9468149 83.84 91.20 90.43 94.17 84.52 80.00 94.50 93.58 86.71 93.72 77.78 86.49 NA 88.99 82.40 92.18 84.69 71.84 90.57 82.31 75.23 86.00 90.98 83.59 81.54 85.71 87.68 84.09 84.55 87.19 81.10 59.35 86.08 88.37 86.34 73.39 85.45 83.44 82.12 75.46 79.28 84.71 82.47 83.09 41.36 74.49 80.23 81.89 81.63 85.29 82.42 85.15 78.48 75.00 84.38 81.61 74.47 69.52 K intron_retention crol,snoRNA:Me18S-A934,I_chr2L_11799403_11802904 chr2L - chr2L_11798042_11798664 chr2L_11798041_11798042;chr2L_11798664_11798665 chr2L_11797829_11798041;chr2L_11798665_11799010 0.66 1.05 0.00 2.21 0.00 1.26 2.43 0.81 1.03 0.00 0.00 1.54 2.72 0.00 0.88 2.03 0.66 0.00 0.00 1.13 2.50 2.91 0.30 1.24 0.00 1.04 1.57 2.55 1.62 0.40 0.00 0.00 0.76 1.53 0.00 1.00 0.95 0.39 1.19 0.00 0.00 1.40 0.00 0.88 0.62 0.00 1.26 1.05 0.63 0.58 1.17 0.00 0.00 0.00 0.52 0.00 0.00 0.00 K alternative_donor Akt1 chr3R + chr3R_11926502_11926621;chr3R_11925318_11926621;chr3R_11925014_11926621;chr3R_11925383_11926621 chr3R_11924988_11926621 chr3R_11926622_11926719;chr3R_11924974_11924987 1.57 3.51 1.72 3.70 2.38 5.26 1.09 3.96 2.27 0.00 0.00 1.96 4.55 1.89 3.57 0.00 5.66 0.00 0.00 1.57 2.86 8.89 0.00 0.00 2.13 2.44 1.35 0.00 2.22 0.00 3.33 0.00 2.70 1.96 0.00 0.00 4.82 0.00 1.39 1.03 0.00 2.70 5.00 1.67 3.57 0.00 1.89 1.82 1.75 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 K alternative_donor CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516706_21517821;chr3L_21516330_21517821;chr3L_21516399_21517821;chr3L_21517168_21517821;chr3L_21516722_21517821;chr3L_21516501_21517821;chr3L_21516918_21517821;chr3L_21516343_21517821 chr3L_21516728_21517821 chr3L_21517822_21517920;chr3L_21516311_21516329 22.22 37.50 27.27 29.41 20.00 21.43 17.39 9.09 30.00 33.33 28.57 17.65 33.33 18.18 22.22 30.77 0.00 28.57 22.22 12.50 18.18 0.00 41.67 25.00 0.00 20.00 25.00 33.33 53.85 33.33 10.00 33.33 30.77 22.22 60.00 25.00 20.00 22.22 28.57 14.29 0.00 14.81 12.50 38.46 25.00 33.33 20.00 33.33 18.18 0.00 20.00 80.00 0.00 50.00 18.18 0.00 33.33 33.33 K cassette nkd,I_chr3L_19000023_19000530,noncoding_13420,I_chr3L_19018736_19037403 chr3L - chr3L_19001355_19037403 chr3L_19001355_19003694;chr3L_19004159_19037403 chr3L_19003695_19004158 chr3L_19001057_19001354;chr3L_19037404_19037429 100.00 NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 100.00 NA 100.00 NA NA 100.00 NA NA NA 100.00 100.00 100.00 NA NA NA NA NA NA NA NA 85.71 NA NA 100.00 NA NA NA NA NA NA NA K intron_retention CG14476,I_chrX_21474758_21476200,I_chrX_21475620_21475965 chrX - chrX_21474758_21475489 chrX_21474757_21474758;chrX_21475489_21475490 chrX_21474658_21474757;chrX_21475490_21475619 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chrX_1796525_1796585,mip130,I_chrX_1820956_1821011,CG11596 chrX + chrX_1822614_1823033 chrX_1822613_1822614;chrX_1823033_1823034 chrX_1822367_1822613;chrX_1823034_1823083 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 2.56 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 3.45 0.00 3.45 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 2.94 0.00 0.00 4.55 2.13 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 K intron_retention CG3011 chrX - chrX_5810513_5810583 chrX_5810512_5810513;chrX_5810583_5810584 chrX_5810296_5810512;chrX_5810584_5810844 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 4.76 NA NA NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 3.03 0.00 10.00 NA 0.00 0.00 0.00 NA 0.00 5.26 0.00 NA NA 0.00 0.00 NA 7.14 0.00 0.00 K alternative_donor Cg25C,I_chr2L_5029811_5029873 chr2L + chr2L_5029811_5030136;chr2L_5029747_5030136 chr2L_5029637_5030136 chr2L_5030137_5030237;chr2L_5029620_5029636 30.77 15.38 36.00 51.72 52.17 54.55 16.67 35.90 37.25 15.38 14.29 19.57 28.95 30.00 41.38 25.93 47.37 50.00 46.88 33.90 31.25 43.75 4.35 9.09 0.00 36.36 21.43 30.00 21.74 16.67 62.86 60.00 31.82 48.08 30.77 14.29 4.76 6.25 7.14 35.90 25.00 60.00 38.89 31.25 53.85 30.00 16.67 47.46 51.28 10.00 5.26 0.00 61.90 0.00 60.42 7.69 0.00 51.02 K jcn_only_AA Aats-ala chr2L - chr2L_8381453_8381679 chr2L_8381549_8381679 chr2L_8381680_8381706;chr2L_8380448_8381452 0.19 0.00 0.00 2.02 0.00 0.44 0.00 0.48 0.29 0.00 0.00 0.46 1.13 0.00 0.36 0.51 0.76 0.00 0.00 0.19 0.00 3.31 0.00 1.19 0.00 0.51 0.00 0.00 0.56 0.58 0.35 0.00 0.26 0.52 0.00 5.30 0.00 0.00 0.69 0.84 0.00 0.73 0.00 0.00 0.41 0.00 1.52 0.23 0.38 1.45 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.67 K intron_retention Mdh chr3R + chr3R_22977629_22979937 chr3R_22977628_22977629;chr3R_22979937_22979938 chr3R_22977361_22977628;chr3R_22979938_22980112 0.43 0.00 0.58 1.59 0.00 0.00 0.00 1.32 0.43 0.00 0.00 0.71 1.28 0.00 0.58 0.48 0.52 1.08 0.00 0.74 1.31 1.15 1.20 0.00 2.02 1.12 0.00 0.00 0.00 1.03 0.00 0.00 2.60 0.00 2.67 2.00 0.85 0.00 1.30 0.66 0.00 0.28 0.00 0.00 0.00 1.01 2.50 0.00 0.67 0.00 1.28 0.00 0.00 1.85 0.00 0.00 1.15 0.00 K intron_retention CG7048,I_chr3R_18313003_18313231,R_chr3R_18313119_18313234,I_chr3R_18313402_18313502 chr3R + chr3R_18313115_18313231 chr3R_18313114_18313115;chr3R_18313231_18313232 chr3R_18313019_18313114;chr3R_18313232_18313331 0.00 0.65 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 3.12 0.60 0.00 2.04 1.98 1.84 1.12 3.96 0.00 1.83 0.00 0.00 0.00 0.00 0.00 1.22 0.00 1.13 0.50 0.00 0.00 0.00 0.00 1.54 0.43 0.50 1.04 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 K intron_retention CG15083 chr2R + chr2R_14724084_14724159 chr2R_14724083_14724084;chr2R_14724159_14724160 chr2R_14723921_14724083;chr2R_14724160_14724348 0.00 0.00 1.06 0.88 0.88 0.00 0.00 1.14 1.33 0.00 1.48 1.25 0.00 0.00 0.93 0.00 0.78 0.00 0.00 0.52 0.00 0.00 1.27 0.00 0.00 0.00 1.89 0.00 0.00 0.00 1.20 0.00 0.00 0.93 0.00 0.00 1.82 0.00 0.44 1.04 0.00 1.15 0.00 0.00 0.60 1.03 0.78 0.00 0.00 0.44 1.10 0.00 0.64 0.50 0.00 1.98 0.43 0.70 K intron_retention CG4266,I_chr2R_17052549_17053657 chr2R - chr2R_17054950_17055100 chr2R_17054949_17054950;chr2R_17055100_17055101 chr2R_17054677_17054949;chr2R_17055101_17055688 2.08 NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA 2.00 NA NA NA NA NA 18.75 NA NA NA 13.33 2.17 NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K intron_retention CG17660 chr2L - chr2L_1708215_1708281 chr2L_1708214_1708215;chr2L_1708281_1708282 chr2L_1708061_1708214;chr2L_1708282_1708402 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.60 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4622 chr2R - chr2R_20421887_20421937 chr2R_20421886_20421887;chr2R_20421937_20421938 chr2R_20421767_20421886;chr2R_20421938_20422609 0.00 NA 0.00 6.67 0.00 NA 0.00 0.00 8.33 NA NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA 10.53 0.00 NA 7.69 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 7.14 NA 0.00 0.00 0.00 NA 0.00 0.00 K alternative_last_exon Qm,RI_chr3L_23084218_23087783,REI_chr3L_23086979_23087779,RE_chr3L_23086979_23087782,I_chr3L_23087712_23087783,E_chr3L_23087825_23087922,RI_chr3L_23087947_23088093 chr3L - chr3L_23087712_23087783;chr3L_23073892_23087783 chr3L_23086979_23087783 chr3L_23073684_23073891 chr3L_23086290_23086978 chr3L_23087784_23087824 99.88 99.86 99.87 98.44 99.75 99.85 99.55 99.84 99.83 99.89 100.00 99.79 99.71 99.93 99.94 99.89 99.80 99.86 99.77 99.88 99.82 99.75 99.93 99.94 99.90 99.87 99.70 99.75 99.63 99.81 99.88 99.88 100.00 99.84 99.91 99.51 99.91 99.81 99.93 99.85 99.96 99.83 99.92 99.94 99.89 99.90 99.95 99.90 99.88 99.86 99.76 99.91 99.95 99.88 99.89 99.95 99.94 99.94 K intron_retention noncoding_4330 chr2L - chr2L_22736131_22736195 chr2L_22736130_22736131;chr2L_22736195_22736196 chr2L_22735486_22736130;chr2L_22736196_22736254 32.39 22.22 25.81 57.45 33.33 36.84 44.44 39.02 32.39 21.74 40.91 35.09 26.09 37.50 37.04 28.21 33.33 34.78 34.62 33.33 38.89 36.36 46.67 21.88 54.55 41.67 48.65 41.38 38.89 10.53 31.03 17.02 23.08 26.19 26.32 42.31 23.88 33.33 18.18 24.00 40.00 37.50 27.78 33.33 19.15 28.26 18.18 22.22 28.57 21.28 33.33 27.78 34.38 20.00 30.77 27.50 25.00 26.23 K jcn_only_AD Rip11,E_chrX_18532733_18533695,RI_chrX_18530353_18530870,RI_chrX_18530742_18530870,RI_chrX_18544139_18544185 chrX - chrX_18530907_18531445 chrX_18530907_18531363 chrX_18530871_18530906;chrX_18531446_18531606 4.17 4.26 1.31 4.22 6.15 4.81 2.71 5.83 2.19 1.96 8.76 3.31 4.58 3.28 4.57 4.62 4.60 3.20 3.43 3.37 8.24 3.64 7.71 4.10 3.94 5.41 6.75 7.54 2.03 3.49 4.34 2.05 3.67 1.93 2.82 6.44 5.06 4.17 6.85 2.42 4.61 3.07 1.23 2.57 2.71 2.75 4.73 4.19 5.91 4.15 4.06 5.74 4.95 5.63 4.01 3.93 5.05 4.78 K jcn_only_AD Cctgamma chr3R + chr3R_12473409_12473557;chr3R_12473318_12473557;chr3R_12473479_12473557;chr3R_12473420_12473557;chr3R_12473464_12473557 chr3R_12473424_12473557 chr3R_12473558_12473651;chr3R_12473311_12473317 0.79 1.53 0.95 1.20 0.99 0.00 1.23 3.96 0.35 0.00 1.00 1.27 0.00 0.92 0.00 1.32 0.00 1.14 1.03 2.05 0.00 0.48 0.00 0.78 0.00 0.00 0.76 0.00 5.00 1.11 0.87 0.00 3.17 1.34 1.45 0.00 0.70 0.00 0.94 0.79 0.00 1.29 1.14 0.00 0.00 0.00 1.16 0.00 0.00 0.88 0.00 1.15 1.47 0.00 0.00 0.93 0.00 3.39 K intron_retention CG30000,I_chr2R_5495525_5495581 chr2R + chr2R_5493888_5493951 chr2R_5493887_5493888;chr2R_5493951_5493952 chr2R_5493785_5493887;chr2R_5493952_5494268 4.84 2.78 1.15 5.10 5.00 6.45 4.04 0.95 4.13 5.97 6.90 6.06 6.90 4.84 3.61 5.63 3.39 3.39 3.33 6.29 0.00 8.33 5.00 3.55 2.47 4.30 6.02 10.42 6.42 9.64 2.02 8.86 3.38 5.71 3.61 3.30 5.88 0.93 4.39 6.47 7.92 4.61 1.61 2.20 5.88 4.55 8.06 6.45 4.17 11.25 6.03 4.40 8.00 5.19 0.00 4.17 2.78 7.23 K jcn_only_AA tomosyn,I_chrX_12527065_12527950,I_chrX_12531219_12531470,I_chrX_12534873_12541731,I_chrX_12548772_12549203 chrX + chrX_12525847_12527945;chrX_12525847_12527950 chrX_12525847_12529764 chrX_12525686_12525846 69.57 NA 65.00 64.71 NA NA 79.07 75.56 76.71 NA 75.00 60.98 80.00 79.31 NA 76.00 NA 62.96 75.76 58.70 77.78 NA 72.22 NA 80.95 66.67 71.43 NA NA NA 69.57 NA 55.00 68.18 58.33 69.57 NA NA NA 62.50 NA 60.47 75.00 NA NA NA 52.00 NA 69.44 NA NA NA NA NA 70.97 NA NA NA K intron_retention lqf,I_chr3L_7522287_7522807 chr3L + chr3L_7522287_7526454 chr3L_7522286_7522287;chr3L_7526454_7526455 chr3L_7522187_7522286;chr3L_7526455_7526543 0.00 2.60 0.00 1.97 0.00 0.00 0.00 1.92 0.97 0.00 2.22 1.06 3.45 1.41 1.12 1.26 0.00 0.00 0.00 0.00 0.00 1.25 1.33 0.00 1.54 0.00 0.00 0.00 1.87 3.23 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 2.44 1.19 0.65 0.00 1.47 0.00 0.00 0.00 0.00 0.00 3.57 0.00 K multi_cassette Jupiter,I_chr3R_7417030_7419354,I_chr3R_7418347_7445425,RE_chr3R_7419487_7429863,I_chr3R_7429934_7430307,I_chr3R_7429962_7445425,I_chr3R_7430006_7445425,RI_chr3R_7442748_7445425,RI_chr3R_7442793_7445425 chr3R - chr3R_7418347_7445425 chr3R_7418347_7419354;chr3R_7419489_7429863;chr3R_7430006_7445425 chr3R_7419355_7419488;chr3R_7429864_7430005 chr3R_7418247_7418346;chr3R_7445426_7445525 45.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CE_chr2R_11826384_11826741,I_chr2R_11826763_11826990,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824089_11825619 chr2R_11824088_11824089;chr2R_11825619_11825620 chr2R_11823989_11824088;chr2R_11825620_11825772 88.67 90.00 NA 65.62 NA NA NA 91.67 100.00 33.33 NA 88.46 70.00 100.00 87.50 92.86 NA NA 100.00 85.00 70.00 93.75 93.33 80.00 88.89 NA 77.78 85.71 91.67 88.89 NA 100.00 100.00 100.00 80.00 NA 66.67 80.00 81.25 94.44 87.50 80.00 NA 100.00 90.00 92.86 84.62 100.00 93.75 85.71 93.33 88.89 NA 66.67 NA 75.00 75.00 84.62 K intron_retention Galpha49B,I_chr2R_8501587_8501648,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500357_8501071 chr2R_8500356_8500357;chr2R_8501071_8501072 chr2R_8500333_8500356;chr2R_8501072_8501850 46.15 NA 61.54 66.67 43.75 NA 42.86 35.71 46.67 NA 56.25 27.50 30.43 33.33 69.23 34.62 40.00 81.82 46.67 48.15 56.25 NA 36.84 46.15 NA 46.15 NA NA NA NA 52.63 NA NA 46.43 NA 36.36 50.00 NA NA NA NA 61.11 50.00 35.71 NA NA NA NA 37.50 NA 45.45 27.78 NA NA 47.06 NA NA NA K intron_retention CG3760,CG3770,CG12851 chr2R + chr2R_20826741_20826793 chr2R_20826740_20826741;chr2R_20826793_20826794 chr2R_20826672_20826740;chr2R_20826794_20826860 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.61 6.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG3529 chr3L + chr3L_9442925_9443331 chr3L_9442925_9443117;chr3L_9443169_9443331 chr3L_9443118_9443168 chr3L_9442789_9442924;chr3L_9443332_9443886 100.00 95.00 100.00 100.00 100.00 100.00 77.78 100.00 97.06 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 95.24 97.14 100.00 94.12 100.00 95.00 95.24 83.33 90.00 100.00 100.00 96.15 100.00 100.00 95.00 95.65 100.00 96.77 96.15 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 96.15 95.65 100.00 100.00 94.44 100.00 100.00 95.24 100.00 K intron_retention CG8726 chr2R - chr2R_3857275_3857373 chr2R_3857274_3857275;chr2R_3857373_3857374 chr2R_3857095_3857274;chr2R_3857374_3857681 1.85 0.00 3.57 4.88 7.84 0.00 13.21 0.00 5.63 0.00 0.00 1.10 3.92 4.17 1.85 5.80 0.00 0.00 1.67 3.23 0.00 2.53 0.00 0.00 8.70 1.75 1.79 0.00 10.81 3.28 5.19 2.38 1.83 6.67 0.00 2.38 0.00 1.92 0.00 2.70 0.00 4.26 2.00 0.00 7.27 3.03 0.00 2.70 4.49 5.71 0.00 0.00 0.00 0.00 5.00 8.11 0.00 0.00 K intron_retention stj chr2R + chr2R_9697869_9697983 chr2R_9697868_9697869;chr2R_9697983_9697984 chr2R_9697419_9697868;chr2R_9697984_9698124 0.00 0.00 0.00 6.12 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 5.61 2.15 0.00 0.00 1.09 3.76 5.56 3.85 1.04 0.00 0.00 2.50 1.35 0.00 1.27 1.40 0.00 0.00 0.00 0.00 1.00 0.00 0.97 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Jafrac1,I_chrX_13223890_13225154,I_chrX_13224064_13225154,RI_chrX_13224713_13225154 chrX + chrX_13224064_13225154 chrX_13224063_13224064;chrX_13225154_13225155 chrX_13223964_13224063;chrX_13225155_13225254 66.67 NA NA 75.00 NA NA 64.29 68.75 57.89 NA 92.31 88.89 NA NA 30.77 83.33 NA 35.71 NA 70.00 58.33 86.21 NA 57.89 NA 60.00 59.26 82.76 66.67 NA 63.64 NA 88.89 53.33 NA 78.57 NA NA NA 88.89 86.67 58.82 NA NA NA 62.50 NA 77.78 50.00 NA 83.33 NA NA NA 66.67 NA NA NA N cassette zfh1 chr3R + chr3R_26592103_26599708 chr3R_26592103_26599294;chr3R_26599459_26599708 chr3R_26599295_26599458 chr3R_26591536_26592102;chr3R_26599709_26600419 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG14425,Sxl,CG14425_Sxl,CEFI_chrX_6981717_6984166,CEF_chrX_6984538_6992033 chrX - chrX_6982783_6985706 chrX_6982801_6985706 chrX_6985707_6985745;chrX_6982611_6982782 60.00 63.64 53.33 68.42 NA NA 61.54 63.64 60.61 NA 60.00 61.54 46.15 58.33 55.56 58.82 70.00 36.36 90.00 53.33 NA NA 46.15 57.14 60.00 NA 52.94 66.67 NA NA 51.22 NA NA 58.62 50.00 NA NA NA NA 52.00 NA 47.83 72.73 62.50 NA NA 55.56 60.87 64.00 NA 63.64 66.67 NA NA 71.43 30.77 75.00 NA K intron_retention Snm1 chr3R + chr3R_1381924_1381980 chr3R_1381923_1381924;chr3R_1381980_1381981 chr3R_1380679_1381923;chr3R_1381981_1382434 0.00 NA NA NA NA NA 7.14 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA 0.00 NA 10.53 NA NA NA NA NA NA 13.64 NA NA NA NA NA NA NA NA NA K intron_retention CG16971,I_chr3L_225856_225909,I_chr3L_225919_225983,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_225856_226769 chr3L_225855_225856;chr3L_226769_226770 chr3L_225819_225855;chr3L_226770_227322 98.21 97.00 98.40 100.00 97.50 99.31 99.65 99.12 98.15 97.17 99.30 98.91 99.57 99.10 99.54 98.21 97.47 98.16 98.99 97.55 98.01 91.72 98.28 97.25 97.37 97.37 96.17 95.50 99.28 96.37 98.54 95.70 98.40 98.80 98.45 96.83 98.66 97.73 96.24 98.21 95.56 98.63 98.80 98.74 100.00 98.46 95.80 98.62 98.77 94.49 96.50 95.09 98.82 96.92 97.59 97.41 98.89 99.25 K intron_retention veg,I_chr2R_12845291_12845765 chr2R + chr2R_12843183_12843248 chr2R_12843182_12843183;chr2R_12843248_12843249 chr2R_12843138_12843182;chr2R_12843249_12844801 90.91 88.89 NA 91.67 NA NA 77.78 90.00 100.00 NA NA 90.00 NA NA 88.89 77.78 NA NA NA 73.33 NA 77.78 85.71 73.33 90.91 NA 92.86 100.00 100.00 NA NA NA 91.67 100.00 NA 100.00 91.67 NA NA 90.48 NA 92.31 NA 91.67 90.00 93.33 100.00 90.00 100.00 NA 91.67 NA 100.00 NA NA 88.89 88.89 90.91 K intron_retention RpL3,E_chr3R_7047964_7050565,I_chr3R_7048452_7049579,snoRNA:Psi28S-291,E_chr3R_7049697_7049750,I_chr3R_7049970_7050189,snoRNA:Me28S-G2017 chr3R + chr3R_7049253_7049579 chr3R_7049252_7049253;chr3R_7049579_7049580 chr3R_7049117_7049252;chr3R_7049580_7049679 0.20 0.13 0.26 0.34 0.20 0.25 0.31 0.15 0.31 0.05 0.34 0.16 0.21 0.19 0.17 0.23 0.25 0.23 0.30 0.16 0.31 0.14 0.25 0.22 0.21 0.10 0.26 0.92 0.11 0.20 0.14 0.21 0.10 0.17 0.18 0.13 0.14 0.20 0.20 0.23 0.32 0.25 0.32 0.21 0.13 0.19 0.08 0.26 0.32 0.27 0.22 0.09 0.15 0.04 0.16 0.13 0.14 0.32 K alternative_donor CG8963,I_chr2R_12906431_12906583,I_chr2R_12906930_12906989 chr2R - chr2R_12906431_12906937 chr2R_12906431_12906711 chr2R_12906331_12906430;chr2R_12906938_12907019 100.00 100.00 96.77 100.00 95.65 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 95.00 100.00 96.67 100.00 100.00 92.86 100.00 100.00 100.00 97.37 100.00 97.30 100.00 100.00 100.00 100.00 100.00 97.83 100.00 96.30 96.55 100.00 100.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 97.37 100.00 95.00 100.00 97.37 100.00 95.45 100.00 K intron_retention lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3963296_3963364 chr2R_3963295_3963296;chr2R_3963364_3963365 chr2R_3963170_3963295;chr2R_3963365_3963607 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 8.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention spi,I_chr2L_19569183_19577185,I_chr2L_19569227_19572142,I_chr2L_19569227_19577173,mir-2a-2,mir-2a-1,mir-2b-2 chr2L - chr2L_19569227_19571571 chr2L_19569226_19569227;chr2L_19571571_19571572 chr2L_19569127_19569226;chr2L_19571572_19571767 6.19 7.14 3.76 4.35 5.13 7.14 4.48 6.06 6.22 9.68 6.74 7.61 3.73 10.71 6.42 7.80 5.19 4.60 7.10 6.76 2.33 4.51 11.31 7.69 5.80 3.91 4.17 4.00 3.90 4.92 7.06 4.67 2.05 4.29 4.72 6.14 6.25 8.43 6.82 11.02 1.57 7.26 4.20 6.45 3.76 6.19 7.97 6.47 7.52 10.78 7.38 4.59 14.29 12.64 5.26 7.56 4.62 6.03 K jcn_only_AA U26,fu12 chr2L - chr2L_8448354_8448424 chr2L_8448365_8448424 chr2L_8448425_8448706;chr2L_8447920_8448353 21.43 NA NA 20.00 NA NA 11.54 9.38 30.43 NA NA 13.33 NA NA 25.00 21.43 NA 10.00 NA 24.32 NA 25.00 25.00 29.17 NA NA 9.09 NA NA NA 35.56 NA NA 33.33 23.81 NA 8.82 NA 15.38 12.82 NA 21.05 NA 30.00 NA NA NA 23.33 13.79 NA 15.38 NA NA NA 23.08 NA NA NA K intron_retention bwa,I_chr2L_20069515_20073377,I_chr2L_20073310_20073377 chr2L + chr2L_20072647_20073377 chr2L_20072646_20072647;chr2L_20073377_20073378 chr2L_20072354_20072646;chr2L_20073378_20073477 16.25 11.94 30.56 17.24 13.64 28.26 16.25 23.53 18.52 10.26 15.00 20.83 19.51 23.91 17.54 23.53 11.76 11.36 20.59 20.18 8.33 27.06 24.18 11.32 14.58 17.50 17.14 21.57 16.67 12.73 26.67 11.76 16.67 18.42 27.50 30.19 17.46 10.64 14.00 8.22 9.62 20.83 18.42 12.31 11.11 11.84 10.84 13.89 22.22 13.13 12.50 13.04 12.24 8.57 19.30 7.81 14.29 15.79 K cassette Sema-1a,R_chr2L_8564297_8610230,E_chr2L_8622170_8631026 chr2L + chr2L_8663252_8665445;chr2L_8663252_8666035 chr2L_8663252_8664157;chr2L_8664221_8665445,chr2L_8664221_8666035 chr2L_8664158_8664220 chr2L_8663198_8663251;chr2L_8666036_8666047 88.89 NA NA NA NA NA NA NA NA 92.31 NA NA NA NA NA NA NA NA NA 100.00 NA 72.73 100.00 NA 88.89 NA NA 83.33 77.78 87.50 NA NA 100.00 NA NA 90.91 92.86 75.00 90.00 100.00 NA 75.00 NA 77.78 NA NA NA 100.00 NA NA 75.00 85.71 NA NA NA NA NA NA K jcn_only_AA l(2)tid chr2R + chr2R_19595998_19596157 chr2R_19595998_19596152 chr2R_19594625_19595997;chr2R_19596158_19596758 81.25 71.43 90.48 NA NA 87.50 NA 86.67 94.44 80.95 NA 78.38 NA NA NA 85.00 NA 88.00 84.00 86.49 NA 84.00 84.44 72.73 57.14 NA 62.96 70.83 91.18 85.71 NA 87.18 82.14 78.26 58.33 NA 89.83 87.50 75.61 72.00 79.41 76.60 NA 79.41 81.16 75.00 77.78 80.95 88.24 80.95 81.25 85.71 84.00 78.12 NA 81.25 85.07 88.24 N jcn_only_AA PNGase,I_chr2R_1906759_1906817,I_chr2R_1906899_1906977 chr2R + chr2R_1907055_1907113 chr2R_1907055_1907110 chr2R_1906978_1907054;chr2R_1907114_1907168 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.63 96.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG7519 chr3L + chr3L_21486456_21486519 chr3L_21486455_21486456;chr3L_21486519_21486520 chr3L_21486348_21486455;chr3L_21486520_21487016 0.00 0.00 0.00 1.41 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.26 0.00 0.00 2.08 0.00 1.82 0.00 0.00 0.00 8.47 11.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 3.23 1.02 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention l(2)k05819,I_chr2L_4396173_4396266 chr2L + chr2L_4396173_4396809 chr2L_4396172_4396173;chr2L_4396809_4396810 chr2L_4396143_4396172;chr2L_4396810_4396906 8.00 11.63 6.52 4.40 5.56 9.52 7.29 7.58 7.44 13.04 0.00 24.24 39.39 7.55 7.84 6.25 4.65 6.00 6.45 8.47 0.00 29.73 5.77 11.32 10.81 2.67 7.02 0.00 10.26 24.14 11.63 3.57 14.29 7.32 8.00 31.03 5.68 13.79 10.34 9.09 14.29 8.33 8.33 6.12 15.00 12.50 6.90 20.00 6.98 10.71 9.52 0.00 NA NA 3.17 7.14 15.38 46.15 K intron_retention Tango1,I_chr2L_6652699_6652752 chr2L + chr2L_6653378_6653434 chr2L_6653377_6653378;chr2L_6653434_6653435 chr2L_6653217_6653377;chr2L_6653435_6653536 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11033,I_chr3R_4879198_4879257,I_chr3R_4882567_4883651 chr3R + chr3R_4879131_4879257 chr3R_4879130_4879131;chr3R_4879257_4879258 chr3R_4879098_4879130;chr3R_4879258_4879357 73.33 NA NA 92.31 NA NA NA 81.82 62.50 NA NA 81.82 NA NA NA NA NA 63.64 NA 60.00 NA 83.33 66.67 NA NA NA NA 71.43 95.24 73.33 87.50 66.67 64.52 91.67 58.33 92.31 NA NA 70.00 76.47 NA 61.54 NA 100.00 NA 77.78 NA 76.67 71.43 63.64 NA NA NA NA 88.89 NA NA 66.67 K jcn_only_AA robl chr2R + chr2R_13344079_13344147 chr2R_13344079_13344141 chr2R_13344010_13344078;chr2R_13344148_13344210 100.00 99.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.45 99.81 100.00 100.00 100.00 99.64 100.00 100.00 100.00 99.66 100.00 100.00 99.74 99.31 99.39 99.62 99.29 99.57 99.59 100.00 100.00 99.52 100.00 100.00 100.00 100.00 99.80 99.68 100.00 100.00 98.21 99.81 100.00 100.00 100.00 100.00 99.06 100.00 99.74 100.00 100.00 100.00 100.00 100.00 99.67 100.00 100.00 99.65 K jcn_only_AD MED21 chr3LHet - chr3LHet_601181_601357 chr3LHet_601181_601284 chr3LHet_601118_601180;chr3LHet_601358_601426 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 95.24 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD sina chr3L + chr3L_16847053_16849396 chr3L_16847626_16849396 chr3L_16849397_16852050;chr3L_16846848_16847052 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 98.11 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 98.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 98.31 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 K alternative_last_exon mnb chrX - chrX_17758579_17763014 chrX_17762200_17763014,chrX_17762203_17763014,chrX_17762403_17763014 chrX_17754755_17758578 chrX_17762134_17762199 chrX_17763015_17763849 6.19 6.67 5.00 3.92 0.00 2.94 6.52 2.17 7.06 20.37 9.38 6.58 14.81 6.67 2.50 12.20 3.57 2.94 3.33 7.53 3.12 10.00 5.43 7.69 7.27 3.45 11.59 6.12 10.34 7.81 7.89 5.26 13.33 3.92 13.21 4.84 6.92 6.25 6.19 10.23 5.08 9.64 0.00 15.15 2.41 5.75 10.39 5.41 8.00 3.57 9.88 5.00 6.67 5.80 2.50 5.33 2.54 4.04 N multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2813977;chr2R_2814097_2814174;chr2R_2814327_2814894;chr2R_2815654_2816013;chr2R_2816342_2816577;chr2R_2816779_2817753 chr2R_2813978_2814096;chr2R_2814175_2814326;chr2R_2814895_2815653;chr2R_2816014_2816341;chr2R_2816578_2816778 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Syx4,I_chrX_2635555_2635621,I_chrX_2636831_2636971 chrX - chrX_2636025_2636593 chrX_2636024_2636025;chrX_2636593_2636594 chrX_2635931_2636024;chrX_2636594_2636830 0.00 0.00 1.22 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 3.57 1.39 0.00 0.00 0.00 0.69 0.00 0.00 0.00 1.06 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 3.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 2.38 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8334,I_chr3L_19870731_19870822 chr3L + chr3L_19867096_19867162 chr3L_19867095_19867096;chr3L_19867162_19867163 chr3L_19866992_19867095;chr3L_19867163_19867439 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K intron_retention RpII15 chr3R + chr3R_10134845_10134906 chr3R_10134844_10134845;chr3R_10134906_10134907 chr3R_10134776_10134844;chr3R_10134907_10135970 44.95 NA 36.36 47.83 30.77 NA 54.55 52.63 46.15 NA NA 53.85 NA NA 47.06 50.00 42.86 NA 30.77 60.00 42.86 NA NA NA NA 58.33 87.50 77.78 87.50 NA 30.77 NA NA 33.33 NA NA 41.18 NA NA 46.15 NA 35.00 58.33 NA 38.46 NA NA NA 40.00 NA NA NA NA NA 43.75 NA 35.29 33.33 K jcn_only_AD CycA,RE_chr3L_11825347_11826111 chr3L - chr3L_11825347_11826586 chr3L_11825347_11825973 chr3L_11825247_11825346;chr3L_11826587_11826636 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.79 100.00 100.00 100.00 100.00 100.00 100.00 99.11 100.00 100.00 99.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.10 100.00 100.00 98.82 100.00 99.14 98.73 100.00 99.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.03 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516706_21517821;chr3L_21516330_21517821;chr3L_21516399_21517821;chr3L_21517168_21517821;chr3L_21516722_21517821;chr3L_21516501_21517821;chr3L_21516343_21517821;chr3L_21516728_21517821 chr3L_21516918_21517821 chr3L_21517822_21517920;chr3L_21516311_21516329 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 3.85 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4988849_4990307 chr2L_4988848_4988849;chr2L_4990307_4990308 chr2L_4988734_4988848;chr2L_4990308_4990450 50.00 NA NA NA NA NA 71.43 77.78 53.33 9.09 NA 46.15 63.64 NA NA 70.00 NA NA NA NA NA 50.00 45.45 30.77 NA NA 53.33 45.45 16.67 NA NA NA NA 70.00 NA NA NA NA 38.46 42.11 NA 64.29 NA 41.67 NA NA NA NA NA NA NA NA NA NA 77.78 NA NA NA K jcn_only_AA RFI_chr2L_3030576_3030666,GABPI chr2L + chr2L_3031894_3032009 chr2L_3031894_3031953 chr2L_3031000_3031893;chr2L_3032010_3032255 100.00 99.41 99.34 99.52 100.00 100.00 100.00 99.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.86 100.00 99.35 100.00 99.72 99.29 100.00 100.00 100.00 100.00 99.25 99.29 100.00 100.00 100.00 99.43 98.84 100.00 100.00 100.00 100.00 98.96 100.00 99.48 100.00 99.40 100.00 100.00 100.00 100.00 99.61 99.37 98.87 99.60 99.45 99.47 99.04 99.20 100.00 99.39 100.00 100.00 100.00 K intron_retention RFeSP chr2L - chr2L_1613424_1613982 chr2L_1613423_1613424;chr2L_1613982_1613983 chr2L_1613044_1613423;chr2L_1613983_1614196 1.05 1.05 0.97 2.05 0.00 1.15 1.05 1.56 1.21 1.72 2.46 0.82 1.72 1.27 0.68 3.47 0.00 1.11 2.61 0.99 1.98 8.67 1.31 1.06 0.56 1.30 1.51 1.45 2.79 0.53 1.62 0.28 1.02 0.96 1.17 0.79 0.95 0.93 0.83 0.86 0.66 0.90 0.86 1.09 0.51 1.33 1.08 2.03 0.64 1.57 0.95 1.20 0.55 0.87 0.61 0.90 0.72 0.97 K jcn_only_AA Csk,I_chr3R_7463337_7463512,I_chr3R_7468928_7472509 chr3R - chr3R_7461302_7461422 chr3R_7461353_7461422 chr3R_7461423_7461691;chr3R_7461191_7461301 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.69 100.00 99.84 100.00 100.00 100.00 100.00 100.00 100.00 99.60 99.72 99.83 100.00 100.00 99.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.74 100.00 100.00 100.00 K intron_retention AGO2 chr3L + chr3L_15552362_15552838 chr3L_15552361_15552362;chr3L_15552838_15552839 chr3L_15552200_15552361;chr3L_15552839_15553216 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.80 100.00 100.00 100.00 99.79 99.49 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.51 99.69 99.62 100.00 100.00 100.00 99.61 100.00 99.34 100.00 99.74 100.00 100.00 100.00 100.00 100.00 100.00 99.46 99.58 100.00 99.32 99.80 100.00 100.00 100.00 99.56 100.00 100.00 100.00 100.00 99.66 100.00 100.00 99.32 100.00 100.00 100.00 100.00 K alternative_donor Asx chr2R + chr2R_10397969_10398509 chr2R_10398000_10398509 chr2R_10398510_10399220;chr2R_10397728_10397968 3.33 2.99 2.38 8.33 6.82 7.32 2.38 3.77 2.27 7.69 14.29 3.30 9.68 9.09 0.00 0.00 4.88 3.33 6.90 4.10 9.68 0.00 4.59 1.09 2.60 4.76 4.82 4.69 10.20 5.26 9.09 0.00 5.56 3.45 3.77 3.28 2.67 2.70 2.19 2.25 0.00 2.35 9.09 0.00 1.61 4.44 1.54 0.00 3.61 6.78 4.94 2.70 4.88 1.72 2.94 3.03 2.00 2.17 K jcn_only_AA kst,I_chr3L_3365752_3365816,I_chr3L_3367008_3367514 chr3L + chr3L_3365752_3365816 chr3L_3365752_3365810 chr3L_3365652_3365751;chr3L_3365817_3365916 99.78 99.51 99.83 99.62 99.82 100.00 100.00 99.89 99.79 99.76 100.00 99.84 99.62 99.86 99.85 99.85 99.60 99.84 99.62 99.85 99.83 99.78 99.75 99.71 99.49 99.60 99.54 99.52 99.78 99.72 99.81 99.52 99.53 99.76 100.00 99.78 99.81 100.00 99.77 99.87 99.83 99.63 99.58 100.00 99.84 99.91 99.72 99.65 99.92 99.58 100.00 99.47 99.75 99.72 99.63 100.00 99.77 99.61 K intron_retention KrT95D,I_chr3R_19825840_19825904 chr3R - chr3R_19825285_19825355 chr3R_19825284_19825285;chr3R_19825355_19825356 chr3R_19824729_19825284;chr3R_19825356_19825839 0.00 0.00 0.96 3.50 1.80 0.00 0.61 0.00 0.70 0.00 0.00 1.18 0.00 2.27 0.00 1.87 0.00 0.00 0.00 0.88 1.65 1.23 3.17 1.76 1.71 0.00 5.03 4.48 1.22 0.00 0.00 0.00 2.00 0.00 1.94 1.55 0.77 0.00 0.00 0.87 0.00 0.87 0.00 0.00 0.00 0.00 1.32 0.00 2.31 1.43 0.00 0.00 0.00 1.98 0.00 0.71 0.00 0.00 K intron_retention CG33129,I_chr2L_10966410_10967142,I_chr2L_10966622_10967108 chr2L - chr2L_10969929_10970001 chr2L_10969928_10969929;chr2L_10970001_10970002 chr2L_10969633_10969928;chr2L_10970002_10970284 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor eas,REI_chrX_16172581_16175010,REI_chrX_16172581_16177702,RI_chrX_16173003_16173054 chrX + chrX_16173003_16174918 chrX_16173003_16173054 chrX_16172903_16173002;chrX_16174919_16175008 83.33 100.00 100.00 100.00 100.00 100.00 100.00 55.56 100.00 50.00 75.00 100.00 66.67 100.00 66.67 83.33 80.00 60.00 75.00 90.91 80.00 66.67 83.33 100.00 66.67 66.67 100.00 75.00 100.00 100.00 42.86 75.00 100.00 83.33 75.00 83.33 75.00 100.00 100.00 87.50 75.00 87.50 100.00 100.00 66.67 80.00 100.00 100.00 87.50 100.00 80.00 66.67 100.00 50.00 100.00 100.00 66.67 75.00 K intron_retention CG11125 chr2R + chr2R_3335761_3335816 chr2R_3335760_3335761;chr2R_3335816_3335817 chr2R_3335292_3335760;chr2R_3335817_3336124 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.39 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA K intron_retention msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2579521_2585604 chr3L_2579520_2579521;chr3L_2585604_2585605 chr3L_2579455_2579520;chr3L_2585605_2585715 0.00 0.00 0.00 0.25 0.00 0.00 0.24 0.23 0.41 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 2.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11790,CG11791 chr3R + chr3R_20876340_20876902 chr3R_20876339_20876340;chr3R_20876902_20876903 chr3R_20875859_20876339;chr3R_20876903_20877278 53.93 51.92 44.00 45.56 75.00 54.84 56.52 40.66 54.55 33.33 50.00 43.30 44.90 42.00 53.19 58.73 56.52 57.78 51.56 49.48 44.90 57.53 54.79 50.75 71.88 75.00 53.33 54.76 68.00 56.36 49.18 65.79 52.63 51.61 58.00 78.79 57.14 50.00 64.00 66.36 69.64 53.93 57.58 63.41 51.56 54.17 47.06 62.07 46.32 42.05 53.33 56.10 38.46 44.68 59.26 47.69 39.47 57.63 K alternative_last_exon CG42336,I_chr2R_7182291_7183676 chr2R - chr2R_7182291_7184766 chr2R_7183391_7184766 chr2R_7181755_7182290 chr2R_7182999_7183390 chr2R_7184767_7184973 1.83 1.69 1.75 0.00 0.00 0.00 1.54 1.06 1.83 2.78 0.00 4.17 2.44 0.00 3.17 1.19 0.00 1.89 1.54 0.83 2.27 5.26 1.72 4.00 3.23 1.85 3.03 5.13 2.70 0.00 2.90 3.57 4.76 2.30 3.57 2.38 1.69 2.56 1.61 2.74 2.13 0.96 2.17 3.51 3.64 1.06 1.47 3.92 1.05 1.59 0.00 0.00 1.85 1.59 1.30 1.45 1.02 2.30 K cassette cv,RI_chrX_5584191_5585924,I_chrX_5584351_5585924,I_chrX_5584353_5585924,I_chrX_5584357_5585924,I_chrX_5584683_5585924 chrX + chrX_5584191_5585924 chrX_5584191_5584350;chrX_5585022_5585924 chrX_5584351_5585021 chrX_5584091_5584190;chrX_5585925_5586024 98.15 98.57 96.61 96.77 97.50 94.64 97.06 100.00 98.31 96.77 100.00 98.98 95.65 100.00 98.33 98.53 97.73 100.00 94.92 98.57 98.11 97.67 98.81 95.18 97.78 98.44 95.45 100.00 98.15 98.00 92.73 91.30 93.33 97.67 97.87 98.18 99.03 98.59 99.01 100.00 91.49 94.92 100.00 98.51 98.55 98.46 94.55 96.23 96.26 100.00 98.63 97.83 97.10 98.31 98.53 93.94 98.73 98.67 K intron_retention CG2698,I_chr3R_3828169_3828941,I_chr3R_3828880_3828941,I_chr3R_3829483_3829715,I_chr3R_3830586_3830981 chr3R + chr3R_3829483_3829709 chr3R_3829482_3829483;chr3R_3829709_3829710 chr3R_3829383_3829482;chr3R_3829710_3829900 80.00 80.00 85.71 84.38 66.67 68.75 80.65 87.10 81.58 88.89 73.33 80.00 94.74 80.00 80.77 90.00 75.00 100.00 95.65 80.95 93.33 100.00 78.12 83.33 78.26 65.38 70.59 86.67 78.57 80.00 85.29 77.78 82.61 85.29 78.95 84.00 64.71 71.43 72.41 82.05 84.00 77.50 80.95 85.71 65.38 75.86 87.50 78.79 79.07 76.67 83.33 82.61 76.92 65.00 70.83 75.86 76.19 70.37 K jcn_only_AD Vap-33-1 chrX + chrX_3843206_3843513;chrX_3843210_3843513;chrX_3843099_3843513;chrX_3843406_3843513 chrX_3843214_3843513 chrX_3843514_3843746;chrX_3843030_3843098 0.00 1.00 0.00 0.54 1.10 0.00 0.44 1.34 1.82 0.00 0.00 0.98 0.86 0.84 0.00 0.00 0.00 1.22 0.00 1.01 0.97 2.70 4.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.85 0.00 0.00 0.84 2.44 1.22 0.00 0.00 0.00 0.00 0.00 0.51 0.00 2.86 0.00 0.00 0.00 0.00 1.11 1.49 5.48 1.92 0.00 0.00 0.00 1.19 2.65 2.38 K intron_retention CG7580,I_chr3L_17468694_17468750,I_chr3L_17468699_17468750 chr3L + chr3L_17468695_17468750 chr3L_17468694_17468695;chr3L_17468750_17468751 chr3L_17468599_17468694;chr3L_17468751_17468850 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.28 0.00 0.00 0.22 0.00 0.21 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.08 0.00 0.23 0.29 0.55 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention M(2)21AB,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_113370_113433 chr2L_113369_113370;chr2L_113433_113434 chr2L_112690_113369;chr2L_113434_114407 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3L_1494947_1496080,pUf68,cue chr3L - chr3L_1503929_1503986 chr3L_1503928_1503929;chr3L_1503986_1503987 chr3L_1503226_1503928;chr3L_1503987_1504320 0.00 0.00 2.33 7.46 0.00 0.00 3.85 0.89 1.94 0.00 0.00 4.35 0.00 0.00 1.87 0.88 3.45 0.00 0.00 0.00 0.00 9.52 2.90 1.06 0.00 0.00 3.28 2.86 0.00 2.00 0.00 0.00 1.52 2.72 0.00 1.92 0.00 3.77 0.00 0.00 0.00 1.38 0.00 1.28 0.00 0.00 0.00 0.00 1.20 0.00 6.06 0.00 0.00 0.00 2.17 0.00 0.00 0.00 K jcn_only_AA Rph,I_chrX_10644396_10644958,I_chrX_10647710_10648325,RI_chrX_10649048_10651427 chrX - chrX_10644396_10644958 chrX_10644404_10644958 chrX_10644959_10645058;chrX_10644296_10644395 100.00 98.28 97.50 97.92 100.00 93.62 100.00 100.00 100.00 100.00 100.00 98.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.39 100.00 95.24 98.55 100.00 97.56 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 98.46 100.00 100.00 97.50 100.00 100.00 97.87 97.37 NA 100.00 100.00 97.96 100.00 100.00 100.00 K intron_retention dpa,CG12736 chr2R - chr2R_3385351_3385411 chr2R_3385350_3385351;chr2R_3385411_3385412 chr2R_3384984_3385350;chr2R_3385412_3385779 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor C1GalTA,I_chr2L_8945896_8950977 chr2L - chr2L_8945535_8950977 chr2L_8945535_8950769 chr2L_8945358_8945534;chr2L_8950978_8951077 7.50 10.00 17.14 7.29 15.79 11.11 9.59 8.55 15.20 5.56 7.14 6.02 5.63 7.81 10.00 8.97 15.38 8.70 8.82 7.50 12.90 2.22 8.82 6.98 0.00 8.11 8.33 4.76 16.67 6.06 5.88 0.00 4.44 10.20 5.71 8.33 17.65 0.00 13.33 5.56 4.88 13.40 8.70 8.70 6.67 4.17 6.90 5.56 11.50 7.32 4.76 9.68 3.45 0.00 10.26 6.25 1.96 3.70 K jcn_only_AD Ilp6,RI_chrX_2226173_2226308,I_chrX_2226173_2226571 chrX - chrX_2226173_2226376;chrX_2226173_2226571;chrX_2226173_2226308 chrX_2226173_2227352 chrX_2226073_2226172;chrX_2227353_2227719 97.87 100.00 98.00 97.87 98.77 94.55 98.97 99.29 99.01 88.89 96.30 100.00 100.00 100.00 97.70 97.58 96.61 95.52 98.63 99.24 100.00 87.50 99.15 97.40 100.00 100.00 100.00 92.86 87.80 98.33 97.37 91.84 94.03 98.36 98.15 95.92 98.36 98.67 100.00 92.06 89.29 100.00 100.00 95.65 94.64 91.55 97.53 92.86 98.68 97.67 97.25 91.30 100.00 98.51 97.85 100.00 95.61 92.42 K jcn_only_AA CG14133 chr3L - chr3L_11683209_11683325;chr3L_11683229_11683325 chr3L_11683239_11683325 chr3L_11683326_11683412;chr3L_11682731_11683208 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 7.41 K alternative_acceptor wge chr3R - chr3R_18539090_18539306;chr3R_18539087_18539306 chr3R_18539117_18539306 chr3R_18539307_18539565;chr3R_18538527_18539086 100.00 90.00 100.00 100.00 100.00 95.83 91.18 100.00 100.00 100.00 100.00 97.73 100.00 96.15 100.00 100.00 100.00 100.00 93.75 98.18 96.55 97.92 95.35 92.86 95.24 100.00 84.62 93.75 100.00 100.00 94.12 100.00 100.00 100.00 92.86 100.00 92.50 100.00 94.59 96.67 100.00 98.25 100.00 100.00 95.65 95.00 100.00 100.00 96.15 100.00 96.77 94.74 87.50 100.00 96.55 100.00 100.00 93.75 K intron_retention lok,RI_chr2L_20063248_20063377 chr2L + chr2L_20062064_20062147 chr2L_20062063_20062064;chr2L_20062147_20062148 chr2L_20062016_20062063;chr2L_20062148_20062305 10.53 14.29 12.50 4.88 NA 0.00 9.09 14.29 10.53 NA NA 13.16 3.85 15.79 0.00 4.35 NA NA 4.55 14.71 5.56 5.56 12.50 0.00 NA 12.50 12.00 0.00 0.00 21.43 12.50 NA 12.50 17.39 11.11 NA 21.05 NA 16.67 12.50 3.12 5.13 8.70 3.45 0.00 10.71 10.53 3.70 12.82 NA 3.85 0.00 NA NA 10.71 NA NA 25.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2389073;chrX_2389272_2389644;chrX_2389762_2393243 chrX_2389074_2389271;chrX_2389645_2389761 chrX_2387149_2387248;chrX_2393244_2393291 1.35 NA NA NA NA NA NA NA NA NA NA 2.70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_927771_929704,CG32021,RI_chr4_928180_928245,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_928177_928245;chr4_928193_928245 chr4_928180_928245 chr4_928246_928314;chr4_928109_928176 30.95 46.88 31.11 34.62 25.00 31.82 26.45 32.26 26.53 35.19 20.00 32.29 32.43 30.95 34.18 34.29 35.14 26.09 23.91 32.56 27.27 35.63 25.51 27.50 32.31 34.69 36.21 35.96 26.92 30.38 26.00 23.68 30.77 30.43 28.12 34.67 27.85 33.33 32.58 20.16 34.55 33.33 30.00 26.05 24.53 31.08 25.00 28.09 34.02 30.38 23.75 25.45 35.71 27.03 38.18 31.25 31.11 22.92 K intron_retention Anxb11,I_chrX_16314152_16314405,I_chrX_16314152_16315813 chrX - chrX_16314152_16316028 chrX_16314151_16314152;chrX_16316028_16316029 chrX_16314083_16314151;chrX_16316029_16316118 90.00 93.33 90.91 89.29 92.86 86.67 77.78 86.21 86.44 NA 95.83 83.78 100.00 83.33 80.00 89.47 93.33 91.67 94.74 86.67 72.73 100.00 94.44 86.67 92.31 92.31 92.86 87.50 NA 90.91 92.00 NA 100.00 86.21 77.78 90.00 80.00 90.00 90.00 75.00 NA 88.89 92.86 90.32 90.91 76.92 92.31 90.00 87.10 94.44 80.95 90.00 NA 87.50 94.74 88.89 88.24 75.00 K jcn_only_AA CG5455,I_chr3R_22287369_22288750 chr3R + chr3R_22292793_22292853;chr3R_22292793_22292855 chr3R_22292793_22292859 chr3R_22292336_22292792;chr3R_22292860_22293068 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 NA 0.00 0.00 0.00 0.00 1.25 3.23 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG5973,I_chr2L_7441485_7443583,I_chr2L_7443388_7443583 chr2L + chr2L_7440852_7443583;chr2L_7441757_7443583;chr2L_7440959_7443583 chr2L_7440963_7443583 chr2L_7443584_7443683;chr2L_7440710_7440851 29.81 26.83 21.74 25.81 30.91 35.90 30.59 25.60 31.63 30.77 27.08 32.73 22.34 36.51 42.11 27.78 21.21 21.54 26.39 32.64 30.00 17.86 35.37 45.16 21.74 30.00 26.32 NA NA 28.57 39.13 20.00 29.63 31.65 15.38 46.94 38.10 NA 26.00 32.14 NA 32.92 30.36 NA 40.00 23.53 18.75 39.47 33.79 33.33 22.86 33.33 35.56 19.05 28.21 23.81 26.92 17.14 K intron_retention PGRP-LC,E_chr3L_9335847_9338977 chr3L + chr3L_9338168_9338708 chr3L_9338167_9338168;chr3L_9338708_9338709 chr3L_9338000_9338167;chr3L_9338709_9338771 20.00 11.11 30.77 15.00 26.67 28.57 40.00 36.36 12.82 NA NA 19.05 23.08 NA 33.33 21.05 NA 11.11 13.33 15.15 23.08 11.76 10.53 22.22 NA NA 23.08 13.33 NA 11.11 25.00 NA 25.00 29.41 NA NA 12.50 NA 20.00 25.00 NA 24.00 28.57 20.00 20.00 20.00 NA 20.00 23.08 12.50 15.00 NA NA NA NA NA 14.29 19.05 K intron_retention scrib,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22423846_22424298 chr3R_22423845_22423846;chr3R_22424298_22424299 chr3R_22423822_22423845;chr3R_22424299_22424434 23.08 NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.35 28.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG11943 chrX + chrX_19752622_19752695 chrX_19752621_19752622;chrX_19752695_19752696 chrX_19751569_19752621;chrX_19752696_19752853 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.50 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA roq,CG4753 chr3L - chr3L_16367765_16367959 chr3L_16367768_16367959 chr3L_16367960_16370110;chr3L_16367508_16367764 93.77 95.06 91.89 96.77 90.91 92.31 90.48 96.51 93.97 91.18 91.43 93.68 78.26 93.33 93.55 94.74 90.00 97.22 96.00 93.29 83.33 95.06 96.60 93.33 94.44 96.88 94.17 89.06 93.33 98.48 96.88 96.55 87.93 90.53 96.23 96.55 90.91 92.86 93.50 94.05 NA 97.08 95.65 92.73 89.13 96.67 96.39 94.83 93.40 89.09 93.97 95.77 90.70 95.35 88.00 92.86 93.85 94.29 K intron_retention CG15609,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12900280_12900789 chr2R_12900279_12900280;chr2R_12900789_12900790 chr2R_12899457_12900279;chr2R_12900790_12900889 0.00 0.00 2.70 0.00 0.00 0.00 3.28 1.56 0.94 0.00 0.00 1.69 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 1.56 0.00 1.61 0.00 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AA CG10188 chr2L - chr2L_19508262_19508325 chr2L_19508266_19508325 chr2L_19508326_19508760;chr2L_19507490_19508261 88.48 81.82 NA NA NA NA 90.48 84.00 92.86 NA NA 86.96 NA NA NA 80.00 NA NA NA 80.65 NA 93.33 NA NA NA NA NA NA 95.45 NA NA NA 80.95 84.00 NA NA NA NA NA 95.00 NA 90.00 NA NA NA NA NA 96.67 85.71 NA 100.00 NA NA NA NA NA NA NA K intron_retention ATPCL,RFI_chr2R_11883823_11884399,I_chr2R_11887476_11888411 chr2R - chr2R_11885509_11885571 chr2R_11885508_11885509;chr2R_11885571_11885572 chr2R_11884782_11885508;chr2R_11885572_11885757 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor CkIIalpha,I_chr3L_23092989_23093344,RI_chr3L_23094196_23095221 chr3L + chr3L_23092824_23093344;chr3L_23092824_23092891 chr3L_23092824_23093319 chr3L_23092680_23092823;chr3L_23093345_23093444 12.50 9.09 9.09 13.33 NA NA 10.53 13.33 8.00 NA NA 0.00 16.67 7.69 0.00 9.09 NA 0.00 0.00 18.18 NA NA 11.11 12.50 14.29 NA NA 33.33 NA NA 28.57 NA 14.29 7.14 14.29 40.00 NA NA NA 18.18 NA 0.00 16.67 0.00 NA NA NA NA 7.69 NA NA 16.67 NA NA 0.00 16.67 16.67 25.00 K cassette Oatp30B,I_chr2L_9521441_9533513,RI_chr2L_9521477_9523162,I_chr2L_9533752_9534868 chr2L + chr2L_9523344_9534886 chr2L_9523344_9533513;chr2L_9533752_9534886 chr2L_9533514_9533751 chr2L_9523332_9523343;chr2L_9534887_9534968 100.00 100.00 85.71 83.33 100.00 100.00 88.89 70.00 94.12 100.00 100.00 90.91 100.00 83.33 100.00 100.00 85.71 100.00 100.00 100.00 83.33 70.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 87.50 80.00 100.00 90.00 NA 100.00 80.00 100.00 NA 100.00 NA 92.31 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 K cassette alph,I_chr3R_25417890_25422962 chr3R + chr3R_25423196_25442776 chr3R_25423196_25430231;chr3R_25430304_25442776 chr3R_25430232_25430303 chr3R_25423141_25423195;chr3R_25442777_25442845 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CaMKII,I_chr4_1059085_1065781,RI_chr4_1061742_1064093,RI_chr4_1061742_1065781,I_chr4_1061989_1065781,RI_chr4_1063745_1065781,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1059064_1065781;chr4_1059061_1065781;chr4_1059085_1065781;chr4_1060705_1065781 chr4_1060705_1064093,chr4_1059061_1064093,chr4_1059064_1064093,chr4_1059085_1064093;chr4_1064151_1065781 chr4_1064094_1064150 chr4_1059054_1059060;chr4_1065782_1065874 31.82 47.83 43.24 43.21 32.00 39.29 25.32 37.18 29.27 NA 36.36 27.40 26.09 31.82 26.32 38.75 42.11 13.33 29.09 27.37 37.14 35.71 42.86 36.36 62.50 24.14 23.81 25.00 16.67 39.13 44.26 25.64 24.14 30.43 40.91 20.00 43.75 33.33 28.57 25.00 43.75 34.92 31.82 29.03 17.86 28.57 34.78 21.95 31.87 37.93 45.00 29.17 26.09 29.17 25.00 38.71 35.90 20.51 K intron_retention eIF2B-delta chr2R + chr2R_19274146_19274464 chr2R_19274145_19274146;chr2R_19274464_19274465 chr2R_19274016_19274145;chr2R_19274465_19275135 91.67 NA NA 75.00 NA NA 83.33 100.00 100.00 NA 87.50 94.12 92.31 NA NA 100.00 NA NA 90.00 91.67 NA NA 90.00 NA NA NA 100.00 91.67 100.00 100.00 NA NA NA 88.89 NA NA NA NA NA 100.00 88.89 100.00 NA NA NA 87.50 88.89 NA 90.91 87.50 100.00 88.89 NA NA NA NA NA NA K jcn_only_AD Btk29A,I_chr2L_8262681_8277370,I_chr2L_8298341_8298782,I_chr2L_8298341_8300884 chr2L - chr2L_8298341_8300817;chr2L_8298341_8300714 chr2L_8298341_8300505 chr2L_8298241_8298340;chr2L_8300818_8301040 88.68 94.44 89.74 86.87 97.22 86.11 86.05 80.26 90.08 91.92 80.70 81.97 83.64 88.24 77.97 76.71 89.13 91.43 90.38 91.80 88.64 91.36 90.11 89.66 88.68 84.44 89.61 80.39 89.68 89.01 90.91 89.58 93.94 88.06 90.24 92.31 92.80 89.47 86.21 89.43 88.33 79.31 81.25 92.06 94.12 88.89 86.79 90.91 82.22 86.44 83.12 75.00 87.50 70.97 74.63 87.50 79.17 90.59 K multi_cassette CG4662,I_chr3R_15676853_15676928 chr3R + chr3R_15676853_15677741 chr3R_15676853_15677063;chr3R_15677142_15677553;chr3R_15677641_15677741 chr3R_15677064_15677141;chr3R_15677554_15677640 chr3R_15676787_15676852;chr3R_15677742_15678147 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 87.50 88.89 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG32529 chrX + chrX_19781447_19793044 chrX_19781526_19793044 chrX_19793045_19793075;chrX_19781430_19781446 36.28 NA 22.73 45.00 NA 38.10 37.93 45.71 28.99 NA NA 32.65 37.50 32.26 NA 35.14 NA 33.33 53.33 32.00 NA 35.48 15.09 20.00 NA NA NA NA NA 51.85 35.71 NA NA 51.11 NA 36.84 NA NA NA 38.46 NA 44.74 NA 31.82 NA NA NA 85.71 39.39 NA 21.62 24.00 NA NA 47.83 NA NA NA K intron_retention f-cup,I_chr3R_9523147_9523556,EI_chr3R_9523187_9523556,I_chr3R_9524004_9524059,EI_chr3R_9524613_9524789 chr3R - chr3R_9523369_9523556 chr3R_9523368_9523369;chr3R_9523556_9523557 chr3R_9523245_9523368;chr3R_9523557_9523656 0.00 NA 0.00 0.00 NA NA 0.00 3.57 2.86 NA 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 NA 4.55 NA NA NA 0.00 NA NA NA K alternative_acceptor CG4065,RI_chr2R_20024231_20024292,I_chr2R_20024873_20024921 chr2R - chr2R_20024859_20024921 chr2R_20024873_20024921 chr2R_20024922_20025021;chr2R_20024773_20024858 0.00 2.70 0.00 0.00 0.00 2.94 0.00 2.78 0.00 3.45 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 1.15 0.00 2.44 0.00 2.00 0.00 0.00 1.82 0.00 1.54 1.67 6.52 1.92 3.70 0.00 0.00 0.00 0.00 2.38 1.92 1.32 1.75 1.32 0.00 2.78 0.00 1.54 0.00 2.84 0.00 0.00 0.00 0.00 0.00 3.57 2.17 2.38 0.00 0.93 K cassette ras chrX + chrX_10638695_10639710 chrX_10638695_10638862;chrX_10639523_10639710 chrX_10638863_10639522 chrX_10638539_10638694;chrX_10639711_10639997 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 87.50 100.00 100.00 K jcn_only_AA Eph,I_chr4_639690_640473,I_chr4_640410_640485,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_640410_640485 chr4_640410_640473 chr4_640310_640409;chr4_640486_640573 100.00 100.00 100.00 98.97 97.73 98.04 100.00 98.18 99.00 100.00 98.00 98.25 100.00 100.00 97.96 100.00 100.00 100.00 98.70 99.14 100.00 100.00 100.00 97.96 100.00 98.15 98.04 NA 98.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.14 100.00 98.25 100.00 99.20 94.87 99.14 98.17 100.00 100.00 98.04 100.00 100.00 100.00 98.18 100.00 99.07 N alternative_acceptor Hrb98DE,RI_chr3R_24429041_24431183 chr3R + chr3R_24429421_24429573;chr3R_24429421_24431183 chr3R_24429421_24429782 chr3R_24429330_24429420;chr3R_24431184_24431283 97.44 98.20 98.46 97.82 97.14 97.17 98.14 97.88 97.66 98.31 99.10 94.56 95.58 96.24 98.15 98.17 98.92 96.52 99.12 98.45 97.78 99.41 96.57 96.69 98.91 99.23 98.40 96.00 97.44 95.53 96.20 96.90 98.28 98.17 96.54 97.12 96.60 97.28 96.83 95.39 99.31 97.77 98.87 97.06 93.36 96.87 96.05 97.70 97.41 98.68 97.44 98.12 91.89 97.39 98.54 97.28 94.89 93.92 K intron_retention CG1622,REI_chrX_13191277_13191339,RI_chrX_13191703_13191779,I_chrX_13191916_13192167,I_chrX_13192409_13192738,EI_chrX_13192857_13192928 chrX + chrX_13191703_13191779 chrX_13191702_13191703;chrX_13191779_13191780 chrX_13191691_13191702;chrX_13191780_13191847 22.06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 63.64 41.67 8.33 NA NA NA 14.29 NA NA 26.67 21.05 NA NA 46.15 NA NA NA NA 14.29 NA NA 5.56 NA NA NA NA NA NA NA NA NA 23.08 N intron_retention Xrp1,I_chr3R_14741648_14750799,I_chr3R_14750298_14750799 chr3R + chr3R_14749868_14750009 chr3R_14749867_14749868;chr3R_14750009_14750010 chr3R_14749792_14749867 22.73 NA NA 17.86 NA NA 100.00 NA 31.25 NA NA 30.77 NA NA NA NA NA NA NA NA NA 0.00 9.09 NA NA NA 23.53 22.73 NA NA NA NA NA NA NA NA NA NA NA 10.53 18.75 29.41 NA 8.33 NA NA NA NA 33.33 16.67 26.67 NA NA NA NA NA NA NA K intron_retention CG4068,I_chrX_4824099_4824170,I_chrX_4824099_4825031,RI_chrX_4824099_4829423 chrX - chrX_4824099_4832007 chrX_4824098_4824099;chrX_4832007_4832008 chrX_4823999_4824098;chrX_4832008_4832103 0.00 0.00 3.33 9.38 0.00 0.00 2.78 0.00 0.00 NA 0.00 3.12 0.00 0.00 4.35 3.70 4.55 0.00 6.25 0.00 0.00 NA 7.41 NA NA 0.00 9.52 NA NA 12.50 7.69 NA 8.33 4.44 0.00 14.29 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 5.88 1.67 NA 0.00 NA NA NA 0.00 NA NA 0.00 K alternative_acceptor stc chr2L + chr2L_15114235_15114311 chr2L_15114235_15114299 chr2L_15113511_15114234;chr2L_15114312_15115753 93.33 85.71 90.91 95.00 87.50 84.62 87.50 95.24 88.89 93.75 100.00 100.00 81.25 100.00 92.00 92.86 84.62 92.86 90.00 93.94 90.00 95.83 96.67 95.83 95.45 84.62 94.74 87.10 89.29 95.45 84.21 100.00 96.00 89.47 100.00 89.66 95.00 93.75 96.00 92.59 100.00 95.83 91.67 93.55 94.44 96.55 91.67 90.38 94.44 92.86 93.75 94.12 90.00 90.00 89.47 93.75 88.24 93.33 K cassette CG7546 chr3L + chr3L_7506493_7506917 chr3L_7506493_7506622;chr3L_7506722_7506917 chr3L_7506623_7506721 chr3L_7505886_7506492;chr3L_7506918_7507454 4.17 6.38 3.17 4.55 4.26 2.13 3.49 2.99 4.17 8.00 0.00 9.68 3.85 2.17 2.27 6.85 4.17 2.00 3.92 2.82 2.08 5.08 5.00 6.67 7.89 6.38 4.94 9.09 5.13 2.04 2.38 6.45 3.85 3.53 2.78 2.94 6.12 4.55 3.37 6.15 6.45 3.30 6.45 11.11 7.69 3.39 6.25 7.32 3.80 1.96 2.70 3.45 3.23 4.35 3.23 5.00 3.85 6.67 K jcn_only_AD Crc,Scm chr3R - chr3R_5455338_5455459 chr3R_5455338_5455429 chr3R_5454930_5455337;chr3R_5455460_5455902 100.00 100.00 100.00 99.96 100.00 100.00 100.00 100.00 100.00 99.93 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.95 99.88 100.00 100.00 99.89 99.96 100.00 100.00 99.93 100.00 100.00 100.00 99.95 100.00 100.00 100.00 99.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.93 100.00 100.00 100.00 99.96 99.97 K intron_retention CG16940,I_chr3L_212740_212843,I_chr3L_212783_212843,noncoding_9585,Kaz1-ORFA_Kaz1-ORFB chr3L + chr3L_212788_212843 chr3L_212787_212788;chr3L_212843_212844 chr3L_212759_212787;chr3L_212844_212943 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 NA K jcn_only_AD CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4840474;chr3R_4839215_4840589 chr3R_4839215_4840394 chr3R_4839038_4839214;chr3R_4840590_4840610 3.39 0.00 5.00 2.22 4.76 0.00 14.29 8.16 3.85 NA 5.71 2.78 3.85 15.15 0.00 4.26 17.39 3.70 7.14 1.82 0.00 4.17 5.56 NA NA 9.09 4.88 0.00 0.00 2.63 2.94 0.00 0.00 3.33 0.00 3.12 2.17 5.00 NA 2.20 0.00 4.35 14.29 0.00 5.56 5.71 6.25 5.26 1.75 8.82 0.00 0.00 0.00 NA 0.00 3.45 8.82 1.64 K intron_retention CG34449,RI_chrX_9232665_9233022,RI_chrX_9249209_9250033,RI_chrX_9249212_9250033,RI_chrX_9249212_9250244 chrX - chrX_9232482_9232545 chrX_9232481_9232482;chrX_9232545_9232546 chrX_9232324_9232481;chrX_9232546_9232664 0.00 0.00 0.00 3.85 7.14 0.00 7.41 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 NA 1.89 0.00 0.00 6.25 12.50 0.00 0.00 22.86 0.00 0.00 NA 0.00 2.70 0.00 16.67 0.00 4.55 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 5.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545781_17545855 chr2R_17545781_17545850 chr2R_17545730_17545780;chr2R_17545856_17545985 80.00 87.50 NA 73.91 NA 75.00 79.55 77.42 85.11 85.71 69.57 78.38 NA NA 81.48 83.33 NA 62.07 NA 79.55 80.00 NA 63.16 72.22 NA NA 90.91 NA 82.00 82.61 77.27 82.14 95.65 75.86 NA NA 76.60 77.78 81.08 84.44 78.26 78.79 NA 92.31 82.76 76.00 84.62 100.00 67.86 92.86 89.19 95.65 80.00 76.60 93.10 76.09 78.26 80.00 K intron_retention dorsal,RI_chr2L_17438018_17439189,FI_chr2L_17449369_17450215,noncoding_3500,RI_chr2L_17450002_17450219 chr2L - chr2L_17449369_17449875 chr2L_17449368_17449369;chr2L_17449875_17449876 chr2L_17449296_17449368;chr2L_17449876_17449887 25.00 NA NA 15.38 NA NA 26.32 30.77 25.00 NA NA 53.85 NA NA NA 26.09 NA NA 20.00 25.00 NA NA 30.77 NA NA NA 69.23 NA NA NA NA NA NA 18.75 NA NA NA NA NA 18.75 NA 38.46 NA NA NA NA NA 11.54 33.33 NA 25.00 NA NA NA NA NA NA 0.00 K cassette CG30497,I_chr2R_3629384_3665979,I_chr2R_3629426_3669231,I_chr2R_3641074_3665979 chr2R - chr2R_3629426_3669231 chr2R_3629426_3665979;chr2R_3667391_3669231 chr2R_3665980_3667390 chr2R_3629326_3629425;chr2R_3669232_3669331 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.35 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.28 100.00 100.00 100.00 K jcn_only_AA CG4049,I_chr2R_20000795_20001276 chr2R - chr2R_19996166_19996223 chr2R_19996175_19996223 chr2R_19996224_19996457;chr2R_19995429_19996165 98.15 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.30 NA NA NA NA NA NA NA NA NA NA NA NA NA 95.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor RI_chrX_7172561_7252693,CG1677 chrX - chrX_7175780_7175855 chrX_7175783_7175855 chrX_7175856_7175993;chrX_7175138_7175779 69.44 73.33 68.57 70.00 66.67 72.73 66.67 67.39 66.67 73.68 54.55 64.29 78.95 78.26 71.88 64.00 77.27 70.97 66.67 61.22 72.00 79.41 64.00 73.81 55.00 72.00 69.44 82.35 64.29 82.61 76.67 80.00 66.67 74.47 77.78 63.64 65.96 69.23 60.61 75.68 68.75 77.05 64.00 74.19 77.42 66.67 78.12 70.00 68.42 73.47 64.10 64.29 65.52 65.00 67.57 70.21 70.37 68.89 K jcn_only_AA CG2698,I_chr3R_3828169_3828941,I_chr3R_3828880_3828941,I_chr3R_3829483_3829715,I_chr3R_3830586_3830981 chr3R + chr3R_3829483_3829697;chr3R_3829483_3829709;chr3R_3829483_3829721 chr3R_3829483_3829555 chr3R_3829383_3829482;chr3R_3829722_3829815 18.18 11.76 21.43 13.11 5.88 10.34 10.71 7.41 24.14 NA 8.11 22.22 27.59 17.65 8.16 14.89 13.64 NA 7.14 13.73 18.18 41.38 15.38 32.26 40.82 16.33 16.36 22.22 19.67 26.19 35.82 12.12 47.62 6.67 30.23 30.77 18.18 20.37 24.62 25.68 31.25 8.75 17.65 23.81 15.00 23.53 15.38 22.00 17.46 34.92 26.09 21.21 19.23 24.44 7.41 23.08 13.21 14.71 K intron_retention TH1 chrX - chrX_16283361_16283428 chrX_16283360_16283361;chrX_16283428_16283429 chrX_16282721_16283360;chrX_16283429_16283910 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 1.60 0.00 0.00 1.49 0.00 2.78 5.63 0.00 0.00 1.75 1.82 1.04 0.00 0.00 2.24 0.00 3.03 2.90 6.38 8.82 4.35 0.00 0.00 2.11 2.86 0.00 0.00 0.00 0.00 2.33 0.89 0.00 1.03 1.64 0.00 0.00 2.34 2.26 4.17 0.00 1.57 1.85 0.00 0.00 0.00 1.05 3.16 0.00 0.93 0.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2814327_2817753 chr2R_2814327_2814894;chr2R_2815654_2816013;chr2R_2816342_2816577;chr2R_2816779_2817459;chr2R_2817604_2817753 chr2R_2814895_2815653;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817460_2817603 chr2R_2814227_2814326;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 K intron_retention CG3209,I_chr2R_19957751_19959513,RI_chr2R_19957766_19960227,I_chr2R_19959163_19959513 chr2R + chr2R_19958528_19959513 chr2R_19958527_19958528;chr2R_19959513_19959514 chr2R_19958291_19958527;chr2R_19959514_19959528 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA NA 100.00 84.21 NA NA 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA NA K intron_retention trio,I_chr3L_999683_1009321 chr3L - chr3L_1024408_1024465 chr3L_1024407_1024408;chr3L_1024465_1024466 chr3L_1024204_1024407;chr3L_1024466_1026346 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 6.52 NA 0.00 2.63 0.00 0.00 0.00 0.00 8.11 0.00 0.00 0.00 0.00 2.90 NA 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 1.82 0.00 14.29 0.00 0.00 3.70 0.00 NA K jcn_only_AA CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_157794_157864 chr4_157794_157848 chr4_157699_157793;chr4_157865_157958 100.00 100.00 98.73 100.00 100.00 96.05 99.48 100.00 99.06 96.43 100.00 99.51 98.84 99.05 98.92 99.61 98.97 100.00 99.31 99.43 100.00 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 99.29 NA 100.00 98.98 98.25 100.00 97.22 100.00 100.00 98.44 100.00 100.00 100.00 100.00 NA 100.00 100.00 98.21 99.55 100.00 100.00 100.00 95.45 NA 100.00 100.00 NA 100.00 K alternative_acceptor Abi,RI_chr3R_9946195_9946332 chr3R - chr3R_9946505_9946568 chr3R_9946508_9946568 chr3R_9946569_9946637;chr3R_9946417_9946504 82.80 83.17 82.67 82.86 83.08 89.86 83.13 82.80 77.64 81.13 87.72 83.09 77.27 79.31 85.23 81.97 86.79 93.85 82.54 80.99 79.71 79.52 83.33 87.61 85.54 78.38 80.17 78.95 80.25 84.11 80.28 85.51 80.00 87.88 85.37 88.89 77.38 78.00 79.27 78.95 84.72 82.64 84.21 84.27 77.48 87.62 75.76 83.91 78.79 84.06 77.19 81.13 82.83 87.10 82.67 79.27 86.99 87.74 K intron_retention CG3499,I_chr2R_18772777_18772819 chr2R - chr2R_18771815_18771870 chr2R_18771814_18771815;chr2R_18771870_18771871 chr2R_18771424_18771814;chr2R_18771871_18772184 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 1.32 1.64 2.37 0.00 0.89 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 K alternative_acceptor B4,I_chr2L_13513474_13549131,I_chr2L_13547133_13549131,I_chr2L_13547162_13547692,I_chr2L_13547304_13549131 chr2L - chr2L_13547162_13549131;chr2L_13547133_13549131 chr2L_13547304_13549131 chr2L_13549132_13549231;chr2L_13547062_13547132 21.59 18.18 25.00 11.11 25.00 25.00 42.86 30.00 26.09 16.67 14.29 31.82 33.33 25.00 40.00 36.36 36.36 42.86 31.25 15.38 10.00 14.29 18.18 9.09 15.38 18.18 26.32 17.65 12.50 13.04 29.41 25.00 21.74 38.89 16.67 29.41 20.00 15.38 15.00 13.04 18.75 33.33 30.00 23.81 18.75 9.09 11.76 14.29 33.33 17.65 18.75 25.00 NA 10.00 33.33 21.43 28.57 22.22 K alternative_acceptor CG5664,RI_chr3L_21432841_21432888 chr3L - chr3L_21432832_21432888 chr3L_21432841_21432888 chr3L_21432889_21432988;chr3L_21432741_21432831 12.50 28.57 NA 30.00 NA NA 15.38 7.41 11.11 NA 6.25 20.00 28.57 NA NA 15.79 NA 7.69 12.50 9.38 NA 9.52 9.09 15.00 NA NA 12.00 26.32 12.50 14.29 10.53 NA 13.04 19.05 NA 12.50 16.67 12.50 10.53 13.04 25.00 14.29 NA NA NA 5.88 10.00 NA 13.04 10.00 12.00 NA NA NA 15.00 12.50 6.90 NA K intron_retention CG17754 chrX + chrX_9144597_9144660 chrX_9144596_9144597;chrX_9144660_9144661 chrX_9144495_9144596;chrX_9144661_9145062 83.33 85.71 78.95 87.50 90.00 87.50 92.31 83.33 78.26 75.00 NA 68.97 73.33 90.00 85.00 94.12 NA 92.31 75.00 83.33 88.89 67.86 90.00 92.86 91.67 90.00 92.86 NA 80.95 78.57 89.47 90.91 94.74 86.96 88.89 94.74 72.00 90.91 68.18 75.00 90.91 79.31 NA 80.00 64.29 73.68 82.35 80.77 73.91 NA 76.47 88.89 69.23 80.00 78.57 NA 60.00 81.25 K intron_retention CG1172 chr3R + chr3R_1220116_1220199 chr3R_1220115_1220116;chr3R_1220199_1220200 chr3R_1219953_1220115;chr3R_1220200_1220265 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.93 3.64 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon CG2930 chrX + chrX_3771492_3773039 chrX_3771492_3771660 chrX_3773040_3773247 chrX_3771661_3772905 chrX_3771437_3771491 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 92.31 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 94.44 100.00 100.00 100.00 100.00 100.00 90.91 80.00 92.31 100.00 100.00 100.00 100.00 95.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG11266,RI_chr2L_7033019_7034764,I_chr2L_7034274_7035406,RI_chr2L_7034911_7035074,I_chr2L_7051093_7051366 chr2L + chr2L_7036036_7036187 chr2L_7036036_7036184 chr2L_7035637_7036035;chr2L_7036188_7036722 98.07 94.52 100.00 98.53 94.87 96.67 97.56 100.00 96.77 98.36 100.00 100.00 100.00 100.00 100.00 100.00 91.67 97.87 96.00 94.06 100.00 97.09 97.76 97.10 97.59 100.00 98.78 98.21 98.55 97.06 98.21 100.00 98.33 93.83 96.15 NA 98.41 98.61 96.19 97.04 100.00 94.06 100.00 97.47 100.00 98.63 93.10 96.63 95.10 98.33 98.20 96.49 100.00 98.48 95.65 96.25 94.44 97.94 K alternative_acceptor CG9636,RI_chr3R_4068335_4068401 chr3R - chr3R_4068299_4068401 chr3R_4068335_4068401 chr3R_4068402_4068501;chr3R_4068235_4068298 0.00 2.94 0.00 1.41 0.00 0.00 0.00 2.13 1.49 3.33 0.00 2.00 0.00 0.00 0.00 1.92 4.55 0.00 3.45 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 2.38 1.85 0.00 0.00 0.00 0.00 0.00 6.25 3.85 1.82 0.00 2.04 0.00 0.00 0.00 0.00 1.92 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 K jcn_only_AD CG32758 chrX - chrX_5615236_5615299 chrX_5615236_5615294 chrX_5613769_5615235;chrX_5615300_5615729 23.03 NA NA NA NA NA 45.95 NA 23.33 NA NA 35.00 NA NA 0.00 NA NA 29.09 NA 25.81 NA 25.00 19.05 NA NA NA NA NA 31.82 26.67 NA NA 25.81 NA 25.00 18.18 15.00 NA 20.83 17.86 NA 20.83 NA 18.18 NA NA 14.81 NA 21.74 NA 22.73 NA NA NA NA NA 35.00 NA K cassette raw,I_chr2L_8712599_8712673,I_chr2L_8735201_8735693 chr2L - chr2L_8713371_8740384 chr2L_8713371_8734466;chr2L_8735201_8740384 chr2L_8734467_8735200 chr2L_8713264_8713370;chr2L_8740385_8740662 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 100.00 100.00 96.77 100.00 96.88 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 98.99 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 97.44 100.00 100.00 98.51 100.00 100.00 100.00 100.00 98.63 99.00 100.00 100.00 100.00 98.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette CG13743,I_chr2R_4938297_4938347 chr2R - chr2R_4935532_4937384 chr2R_4935532_4935680;chr2R_4935843_4937384 chr2R_4935681_4935842 chr2R_4935419_4935531;chr2R_4937385_4937566 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA 80.00 NA NA NA NA 100.00 N alternative_acceptor Fer1HCH,I_chr3R_26212319_26213496,I_chr3R_26213132_26213185 chr3R - chr3R_26211964_26212040 chr3R_26211979_26212040 chr3R_26212041_26212109;chr3R_26211898_26211963 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.64 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CtBP chr3R + chr3R_8837594_8845063 chr3R_8837593_8837594;chr3R_8845063_8845064 chr3R_8837487_8837593;chr3R_8845064_8845536 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 K jcn_only_AD CG7971,I_chr3L_1659363_1659845,I_chr3L_1667736_1667806 chr3L - chr3L_1659991_1661226 chr3L_1659991_1661108 chr3L_1659846_1659990 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.20 100.00 100.00 100.00 100.00 100.00 100.00 99.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG11151 chrX + chrX_13634146_13634710 chrX_13634145_13634146;chrX_13634710_13634711 chrX_13633982_13634145;chrX_13634711_13635156 0.26 0.24 0.64 0.51 0.00 0.26 0.00 0.48 0.62 0.37 0.90 0.55 0.00 0.34 0.43 0.26 0.38 0.00 0.00 0.37 0.00 0.77 0.47 0.22 1.50 0.00 0.70 1.62 0.00 0.19 0.00 0.00 0.00 0.00 0.26 0.00 0.41 0.47 0.46 0.30 0.00 0.52 0.30 0.00 0.43 0.00 0.39 0.00 0.44 0.00 0.64 0.00 0.23 0.00 0.00 0.23 0.00 0.08 K alternative_donor CG3631 chr3R + chr3R_10705801_10705885;chr3R_10705805_10705885 chr3R_10705766_10705885 chr3R_10705886_10706516;chr3R_10705554_10705765 62.02 NA NA NA NA NA 61.54 NA 61.54 NA NA 71.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 58.33 NA NA NA NA NA 50.00 NA 70.00 NA NA NA NA NA NA 66.67 NA NA NA NA NA 62.50 NA NA NA K alternative_donor Roughened,I_chr3L_1861677_1861777,I_chr3L_1861677_1861929,I_chr3L_1861677_1862177 chr3L - chr3L_1861677_1862060;chr3L_1861677_1862177 chr3L_1861677_1861777 chr3L_1861577_1861676;chr3L_1862178_1862277 3.01 2.22 3.26 9.63 2.92 2.67 5.61 2.97 2.21 3.45 2.65 2.43 2.27 1.39 3.24 3.66 3.76 3.61 3.18 1.93 1.94 23.47 3.16 3.17 6.98 6.21 8.54 11.90 6.55 1.33 3.16 2.70 2.95 2.54 4.08 2.45 3.28 2.55 3.41 4.07 7.14 3.01 2.07 4.05 3.16 2.07 2.48 2.67 1.96 3.64 3.63 2.67 2.72 1.75 3.05 1.27 2.04 1.57 K jcn_only_AA Cf2,I_chr2L_4882802_4882864 chr2L - chr2L_4882802_4882864;chr2L_4882493_4882864 chr2L_4882366_4882864 chr2L_4882865_4882964;chr2L_4881215_4882365 8.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA 20.69 NA NA NA NA NA NA NA 8.33 NA NA NA NA NA NA NA NA NA NA K jcn_only_AA Mtch,RI_chr3L_184729_185366,I_chr3L_185367_185925 chr3L + chr3L_184682_184777 chr3L_184682_184774 chr3L_184674_184681;chr3L_184778_184854 58.81 NA 59.26 41.67 54.55 38.10 61.90 59.09 68.89 NA 61.90 65.52 54.55 75.00 68.75 NA NA NA NA 55.56 60.87 NA NA NA NA NA NA NA NA NA 46.15 NA NA 62.50 NA NA NA NA NA 46.67 NA 64.44 70.00 NA 57.58 NA NA 48.57 58.54 NA NA NA NA NA 57.50 NA NA 47.06 K multi_cassette CG41099,R_chr3RHet_1688501_1702556,I_chr3RHet_1688505_1705884,RI_chr3RHet_1703294_1705884 chr3RHet - chr3RHet_1688505_1705884 chr3RHet_1688505_1702560;chr3RHet_1703294_1705736;chr3RHet_1705816_1705884 chr3RHet_1702561_1703293;chr3RHet_1705737_1705815 chr3RHet_1688405_1688504;chr3RHet_1705885_1705984 100.00 100.00 100.00 92.86 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG2478,I_chr2L_20653491_20653552 chr2L - chr2L_20654704_20654757 chr2L_20654703_20654704;chr2L_20654757_20654758 chr2L_20653856_20654703;chr2L_20654758_20655522 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K intron_retention Tango2,RI_chrX_13543535_13546911,I_chrX_13544101_13544542 chrX + chrX_13511140_13511210 chrX_13511139_13511140;chrX_13511210_13511211 chrX_13511098_13511139;chrX_13511211_13511253 87.50 91.67 81.82 100.00 88.89 NA 75.00 91.67 89.47 90.00 NA 100.00 100.00 91.67 88.89 93.75 100.00 NA 100.00 94.74 NA 71.43 78.26 81.82 100.00 88.89 93.75 71.43 95.00 80.00 93.33 72.22 88.89 100.00 69.23 NA 80.00 87.50 94.12 77.42 76.47 92.31 87.50 65.38 65.00 80.00 87.50 75.00 78.57 80.00 75.00 81.25 NA 80.00 87.50 83.33 91.67 84.62 K cassette lqf,I_chr3L_7522287_7522807 chr3L + chr3L_7528745_7530075 chr3L_7528745_7529103;chr3L_7529536_7530075 chr3L_7529104_7529535 chr3L_7528643_7528744;chr3L_7530076_7530479 6.78 5.97 7.69 5.26 2.17 1.85 10.47 6.74 7.64 9.68 10.00 14.66 4.44 5.77 6.35 10.14 14.00 7.84 3.57 16.94 13.85 2.44 6.06 4.88 7.14 5.26 5.68 4.17 9.33 5.71 13.33 4.55 7.41 9.30 9.30 15.25 6.90 5.48 3.53 6.62 5.45 6.15 6.38 8.08 6.35 9.72 6.02 7.94 7.69 2.74 6.82 3.64 15.38 7.14 5.95 6.78 7.23 12.50 K cassette B52,E_chr3R_9488770_9491174 chr3R + chr3R_9491624_9492140 chr3R_9491624_9491805;chr3R_9491971_9492140 chr3R_9491806_9491970 chr3R_9491312_9491623;chr3R_9492141_9492586 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.69 100.00 99.69 100.00 100.00 100.00 100.00 100.00 100.00 99.59 100.00 100.00 100.00 99.58 100.00 99.88 99.87 100.00 99.25 100.00 99.80 99.14 99.79 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.72 100.00 100.00 100.00 99.81 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG8301 chr3R + chr3R_5410293_5410937 chr3R_5410292_5410293;chr3R_5410937_5410938 chr3R_5410206_5410292;chr3R_5410938_5411408 0.00 NA 0.00 14.29 NA 0.00 7.14 23.53 0.00 NA NA 0.00 NA NA NA NA NA 10.53 NA 0.00 NA 16.67 NA NA NA NA NA NA 0.00 NA NA NA 0.00 5.56 NA NA NA NA 0.00 0.00 NA 0.00 NA NA 13.33 0.00 NA 0.00 7.69 0.00 NA NA NA NA NA 7.69 NA 0.00 K intron_retention I_chr3R_23069667_23070365,CG5987,pll chr3R - chr3R_23077573_23077635 chr3R_23077572_23077573;chr3R_23077635_23077636 chr3R_23076862_23077572;chr3R_23077636_23078301 1.89 2.04 0.00 2.60 2.33 2.38 4.23 3.70 5.17 3.85 2.94 3.03 0.00 6.06 3.17 1.72 0.00 0.00 5.41 0.84 0.00 7.02 0.00 0.00 0.00 3.85 6.90 0.00 0.00 5.00 0.00 0.00 8.16 1.67 2.78 0.00 1.33 0.00 0.00 2.00 0.00 1.89 10.00 2.00 1.56 4.69 0.00 0.00 5.81 4.55 4.62 2.17 0.00 1.72 3.51 0.00 0.00 0.00 K jcn_only_AA CG8478,CREF_chr3R_5589662_5589762 chr3R + chr3R_5589658_5589762;chr3R_5589658_5589759 chr3R_5589658_5589747 chr3R_5589562_5589657;chr3R_5589763_5589862 2.44 0.00 1.54 2.41 2.86 5.56 2.04 1.33 3.66 0.00 2.27 2.00 2.94 10.00 6.25 4.41 0.00 0.00 0.00 3.42 4.17 2.44 1.79 0.00 3.57 1.89 3.85 8.70 2.78 2.60 2.17 1.92 3.23 5.19 0.00 6.98 0.00 0.00 1.67 3.19 2.44 2.27 4.65 4.26 9.72 2.00 2.56 1.10 2.02 3.57 1.75 3.03 9.09 3.33 2.33 0.00 NA 3.41 K alternative_donor CG31365,RI_chr3R_18950724_18950786,RI_chr3R_18950918_18950979 chr3R - chr3R_18950724_18950786 chr3R_18950724_18950783 chr3R_18950655_18950723;chr3R_18950787_18950846 100.00 87.50 100.00 93.75 NA 88.89 90.00 100.00 90.48 NA NA 92.86 100.00 NA 87.50 100.00 NA 87.50 90.91 94.44 100.00 100.00 91.67 100.00 NA 100.00 NA NA 100.00 100.00 NA 100.00 95.24 100.00 NA 90.00 100.00 NA 92.86 94.12 100.00 89.47 NA NA NA 100.00 100.00 100.00 93.75 100.00 100.00 88.89 100.00 100.00 90.00 90.91 100.00 95.00 K intron_retention RhoGAP93B chr3R - chr3R_16910199_16910259 chr3R_16910198_16910199;chr3R_16910259_16910260 chr3R_16910075_16910198;chr3R_16910260_16910376 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG6151,I_chr3L_15806727_15808816 chr3L - chr3L_15805342_15806345 chr3L_15805998_15806345 chr3L_15806346_15806453;chr3L_15805029_15805341 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.91 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG13384 chr2L + chr2L_8386386_8386474;chr2L_8386386_8386486 chr2L_8386386_8386483 chr2L_8386217_8386385;chr2L_8386487_8387378 32.83 32.57 35.63 33.52 35.12 34.16 34.36 33.93 32.64 30.19 32.47 33.23 34.58 33.23 32.67 31.14 31.29 34.84 32.66 30.11 35.59 32.52 29.61 31.77 31.80 37.32 32.14 31.39 34.98 34.53 37.08 32.54 33.98 33.85 31.99 31.65 31.66 33.09 30.28 32.80 36.88 32.62 31.97 32.83 32.01 34.78 34.69 32.47 33.08 29.21 31.90 32.84 34.78 33.70 33.80 34.02 31.85 36.36 K alternative_acceptor CAP-D2 chr3R + chr3R_25501579_25501909;chr3R_25501579_25501655 chr3R_25501579_25501620 chr3R_25501398_25501578;chr3R_25501910_25501927 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 1.72 2.33 3.12 0.00 3.64 3.45 2.86 2.78 3.70 0.00 2.00 0.00 0.00 5.26 5.17 2.50 2.04 1.79 0.00 0.00 0.00 6.45 7.14 0.00 0.00 2.27 0.00 0.00 3.51 3.70 0.00 5.00 0.00 3.57 6.67 5.88 K alternative_acceptor dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21308939_21309945 chr2L_21309092_21309945 chr2L_21309946_21309974;chr2L_21308288_21308938 100.00 100.00 100.00 90.91 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 90.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA NA 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA K intron_retention I_chr3R_23771063_23772599,CG4951,RI_chr3R_23778808_23778861 chr3R - chr3R_23778647_23778714 chr3R_23778646_23778647;chr3R_23778714_23778715 chr3R_23778479_23778646;chr3R_23778715_23778798 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 2.56 0.00 0.00 0.00 0.00 0.00 3.06 0.00 0.00 4.04 0.89 7.55 5.36 10.53 4.65 7.69 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 7.50 0.98 0.00 0.00 0.00 0.00 0.00 0.00 1.89 5.10 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 K intron_retention SWAP,I_chrX_935995_936292,RI_chrX_938935_938985,I_chrX_941459_982652 chrX + chrX_935437_936292 chrX_935436_935437;chrX_936292_936293 chrX_935026_935436;chrX_936293_936392 37.14 43.24 48.28 52.08 34.62 28.95 63.64 40.43 36.99 46.67 27.59 31.03 42.86 48.00 40.91 32.26 57.14 32.00 46.67 32.86 23.81 25.00 40.43 29.27 43.33 0.00 42.86 35.71 40.74 32.65 28.33 27.27 31.75 38.78 32.35 12.82 40.74 50.00 42.11 35.09 33.33 43.55 47.06 57.14 33.33 37.14 34.21 38.30 47.54 41.38 28.85 48.15 43.33 23.08 39.39 31.03 36.67 36.36 K intron_retention G-ialpha65A,I_chr3L_6967574_6972726 chr3L - chr3L_6966634_6966689 chr3L_6966633_6966634;chr3L_6966689_6966690 chr3L_6965736_6966633;chr3L_6966690_6966878 0.23 0.25 0.00 0.30 0.00 0.30 0.28 0.28 0.48 0.00 0.00 0.14 0.00 0.58 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.15 0.30 0.23 0.00 1.10 2.51 0.54 0.00 0.70 0.00 0.00 0.42 0.31 0.00 0.00 0.00 0.16 0.42 0.00 0.25 0.00 0.47 0.00 0.60 0.39 0.46 0.81 0.32 0.80 0.24 0.00 0.49 0.00 0.00 0.57 0.00 K jcn_only_AD cryptocephal,noncoding_4181,I_chr2L_21311307_21311752,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21311307_21311752;chr2L_21311532_21311752;chr2L_21311215_21311752 chr2L_21311033_21311752 chr2L_21311753_21311852;chr2L_21310948_21311032 86.62 88.32 90.06 94.12 88.62 90.09 90.09 93.82 86.50 73.71 90.32 91.39 89.95 88.41 90.31 79.48 86.96 74.54 90.53 91.35 88.72 78.47 91.60 82.73 86.95 94.18 82.11 86.86 73.25 85.57 86.17 77.52 87.17 91.33 85.15 81.76 79.93 82.33 81.16 70.51 81.75 89.57 89.30 82.58 80.00 83.57 86.62 81.53 90.69 83.09 86.62 79.12 86.85 83.82 90.53 81.36 90.00 84.93 K intron_retention ade2 chr2L - chr2L_6045527_6045893 chr2L_6045526_6045527;chr2L_6045893_6045894 chr2L_6044428_6045526;chr2L_6045894_6046003 13.33 13.33 9.09 13.16 11.76 13.33 16.67 7.14 10.53 0.00 NA 8.57 0.00 NA 26.32 13.04 14.29 9.68 22.22 10.64 6.25 50.00 9.09 11.11 NA 11.76 NA NA 25.00 NA 16.00 NA 30.77 7.14 33.33 21.43 13.04 10.53 17.39 35.29 NA 14.29 NA NA NA 14.29 NA 26.09 15.91 17.65 22.22 NA NA NA 9.09 NA NA 21.43 K jcn_only_AA CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5043017_5043077;chr2L_5042891_5043077;chr2L_5042885_5043077 chr2L_5042888_5043077 chr2L_5043078_5043083 10.00 NA 0.00 9.38 NA NA 7.14 17.07 14.29 NA NA 14.58 23.53 9.38 11.11 7.27 4.55 NA 13.64 12.90 8.00 NA 18.52 4.55 NA NA NA NA NA NA 4.00 NA NA 7.32 NA NA NA NA NA NA NA 4.17 11.11 NA NA 12.00 17.39 NA 11.43 6.06 0.00 8.00 NA NA 13.89 10.00 11.43 NA K intron_retention CG5746 chr3R - chr3R_20173803_20173868 chr3R_20173802_20173803;chr3R_20173868_20173869 chr3R_20173386_20173802;chr3R_20173869_20174282 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.60 2.59 0.00 0.00 0.00 5.21 6.06 1.80 0.00 0.00 1.47 2.30 0.00 0.00 1.20 0.00 0.00 0.00 0.61 2.60 1.68 0.00 0.00 0.00 0.00 0.00 1.13 3.61 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 1.56 K jcn_only_AA Pms2,I_chr2R_11257708_11257764 chr2R - chr2R_11255877_11255990 chr2R_11255939_11255990 chr2R_11255991_11256244;chr2R_11255577_11255876 97.42 NA NA 96.00 NA NA 85.19 95.83 96.97 NA NA 86.67 NA NA NA 100.00 NA NA NA 98.53 NA NA 100.00 NA 100.00 NA 95.65 NA NA NA 95.65 100.00 96.15 100.00 NA NA 100.00 87.50 96.15 98.08 100.00 97.87 NA NA 100.00 93.10 91.30 90.62 94.87 91.67 100.00 NA NA 100.00 NA NA 100.00 100.00 N alternative_acceptor HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13164676_13165514;chrX_13164646_13165514 chrX_13164727_13165514 chrX_13165515_13165622;chrX_13164424_13164645 2.22 2.74 3.49 3.51 1.45 2.67 9.45 2.80 2.33 2.04 2.67 1.39 4.41 2.94 1.15 2.22 2.99 1.35 2.86 1.78 1.67 2.86 0.81 2.06 2.60 4.23 2.94 4.08 3.80 0.00 3.45 0.00 1.64 3.23 1.47 15.28 1.63 0.00 0.90 1.32 0.00 1.82 1.47 0.00 2.04 2.70 3.70 0.87 2.44 2.90 2.54 2.86 0.00 2.63 0.99 1.85 2.13 1.47 K alternative_donor CG2017 chr3R - chr3R_1686127_1686928 chr3R_1686127_1686711 chr3R_1685454_1686126;chr3R_1686929_1687019 100.00 NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA 100.00 NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA K intron_retention CG10069,I_chr2R_17171765_17171886 chr2R + chr2R_17171765_17171886 chr2R_17171764_17171765;chr2R_17171886_17171887 chr2R_17171740_17171764;chr2R_17171887_17171986 9.30 NA 10.53 0.00 NA NA 14.29 3.70 10.00 NA NA 15.00 NA NA 12.50 19.05 NA NA 15.79 9.09 NA 0.00 17.65 0.00 NA NA 7.14 NA 0.00 NA 9.52 NA 0.00 17.65 NA NA NA NA NA 3.85 0.00 19.05 NA NA 0.00 3.12 NA 8.33 10.53 NA 12.50 NA NA NA 12.50 NA NA 0.00 K alternative_donor I_chr2R_7165832_7165906,CG9067,CG9062,I_chr2R_7171366_7171418 chr2R - chr2R_7166631_7166695 chr2R_7166631_7166691 chr2R_7166551_7166630;chr2R_7166696_7166783 0.00 NA 0.00 0.00 NA 0.00 0.00 1.96 2.27 NA 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_16982134_16983336;chr3R_16982134_16982890;chr3R_16982134_16983164;chr3R_16982134_16983218 chr3R_16982134_16983159 chr3R_16982126_16982133;chr3R_16983337_16983376 45.83 35.29 31.58 48.00 50.00 33.33 47.22 47.50 54.35 22.22 50.00 52.63 50.00 45.83 52.63 53.12 56.25 42.86 53.57 53.57 30.77 33.33 52.63 35.71 33.33 50.00 58.33 42.86 50.00 36.36 61.54 57.14 31.25 53.85 50.00 61.54 55.56 37.50 50.00 27.27 36.36 45.00 42.86 35.71 16.67 43.75 37.50 30.43 44.68 37.50 52.94 30.77 33.33 20.00 53.57 22.22 50.00 57.14 K alternative_donor CG10550 chr3R - chr3R_21133632_21134032;chr3R_21133632_21133902 chr3R_21133632_21134036 chr3R_21133411_21133631;chr3R_21134037_21134116 8.33 NA NA 8.33 NA NA 10.00 0.00 12.50 NA NA NA NA NA NA NA NA NA NA 11.11 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA K intron_retention Moe,I_chrX_8774434_8791759 chrX - chrX_8785657_8785766 chrX_8785656_8785657;chrX_8785766_8785767 chrX_8785595_8785656;chrX_8785767_8785791 98.46 98.43 98.96 99.46 98.36 98.71 99.17 98.97 98.00 98.95 98.92 99.21 99.67 98.89 98.88 96.93 98.54 97.96 98.89 98.32 99.42 88.62 97.44 98.62 99.02 99.09 99.87 98.43 99.30 98.27 99.03 98.41 96.57 98.73 98.43 100.00 98.10 98.22 98.12 98.55 99.37 97.70 98.29 99.02 97.36 98.45 97.81 99.53 98.12 97.42 99.07 98.20 98.15 98.46 98.43 98.63 97.85 98.35 K cassette Baldspot,I_chr3L_16644636_16654570,I_chr3L_16652567_16652897,I_chr3L_16652567_16654296,RI_chr3L_16652567_16654506,RI_chr3L_16652567_16654512 chr3L - chr3L_16644636_16654570 chr3L_16644636_16652329;chr3L_16652567_16654570 chr3L_16652330_16652566 chr3L_16644536_16644635;chr3L_16654571_16654606 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.86 100.00 100.00 99.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.87 100.00 98.10 100.00 100.00 100.00 100.00 100.00 99.33 99.59 100.00 100.00 100.00 100.00 100.00 100.00 99.54 99.71 99.68 99.71 99.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.80 100.00 100.00 100.00 100.00 100.00 99.37 100.00 100.00 100.00 100.00 K intron_retention coro,I_chr2R_2754447_2755071 chr2R - chr2R_2752555_2752612 chr2R_2752554_2752555;chr2R_2752612_2752613 chr2R_2752141_2752554;chr2R_2752613_2752879 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG2225,Ef2b,snmRNA:254 chr2L - chr2L_21680181_21680756 chr2L_21680180_21680181;chr2L_21680756_21680757 chr2L_21679484_21680180;chr2L_21680757_21681284 0.03 0.00 0.11 0.09 0.00 0.00 0.04 0.07 0.06 0.14 0.00 0.10 0.07 0.00 0.00 0.04 0.00 0.00 0.09 0.03 0.00 0.05 0.00 0.06 0.05 0.04 0.14 0.21 0.18 0.00 0.00 0.00 0.04 0.00 0.00 0.09 0.06 0.00 0.00 0.06 0.10 0.07 0.00 0.03 0.00 0.00 0.00 0.10 0.07 0.05 0.03 0.00 0.00 0.00 0.00 0.00 0.03 0.08 K intron_retention Abl,I_chr3L_16622304_16639909,RI_chr3L_16652567_16654512 chr3L - chr3L_16618375_16619627 chr3L_16618374_16618375;chr3L_16619627_16619628 chr3L_16616737_16618374;chr3L_16619628_16619716 11.11 10.13 6.94 35.62 3.33 7.84 22.37 11.39 10.97 8.89 12.00 17.20 24.39 8.57 5.41 15.38 6.25 4.76 17.65 8.98 9.72 15.65 12.73 12.86 23.94 17.65 21.33 12.20 17.35 10.81 16.22 14.29 11.11 7.96 6.25 31.75 7.14 7.79 8.57 9.70 25.76 13.29 11.54 13.70 7.06 12.50 6.00 16.22 9.60 16.67 13.10 7.55 7.55 10.64 7.06 10.71 12.96 10.81 K alternative_acceptor CG4616 chr2R + chr2R_9094497_9094571 chr2R_9094497_9094566 chr2R_9094354_9094496;chr2R_9094572_9094854 88.89 NA NA 88.89 NA NA NA 88.89 100.00 NA NA 88.89 NA NA 87.50 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 77.78 K intron_retention CG2976 chr2L - chr2L_4830401_4830468 chr2L_4830400_4830401;chr2L_4830468_4830469 chr2L_4830040_4830400;chr2L_4830469_4830778 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 1.01 0.00 7.95 1.22 1.52 0.00 0.00 4.31 2.44 8.57 0.81 1.00 0.00 0.00 0.00 3.57 0.00 0.00 1.83 0.73 0.61 0.00 0.89 0.00 1.25 1.22 1.78 0.00 0.00 0.00 2.91 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 N jcn_only_AA CG5535 chr3L - chr3L_17847808_17849745 chr3L_17849637_17849745 chr3L_17849746_17849932;chr3L_17847440_17847807 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Pp2A-29B,I_chr2L_8367210_8367311,I_chr2L_8369561_8369715 chr2L + chr2L_8367210_8367311 chr2L_8367250_8367311 chr2L_8367312_8367379;chr2L_8367110_8367209 99.74 100.00 100.00 99.69 99.42 100.00 100.00 99.68 100.00 99.12 100.00 100.00 99.45 100.00 99.60 100.00 100.00 100.00 99.51 99.79 100.00 100.00 99.73 100.00 99.55 100.00 99.61 100.00 99.33 100.00 99.55 100.00 99.30 99.67 100.00 99.42 99.65 98.47 99.69 100.00 100.00 99.74 100.00 98.60 100.00 99.38 100.00 99.08 99.73 99.47 99.65 99.39 98.90 99.33 100.00 100.00 99.39 100.00 K intron_retention tomosyn,I_chrX_12531219_12531470,I_chrX_12534873_12541731,noncoding_23357,I_chrX_12548772_12549203 chrX + chrX_12542817_12545142 chrX_12542816_12542817;chrX_12545142_12545143 chrX_12542700_12542816;chrX_12545143_12545259 76.92 70.00 88.89 68.00 NA NA 100.00 NA 89.47 NA NA NA NA NA 77.78 80.00 NA 90.00 80.00 76.92 NA 81.82 76.92 69.23 NA NA NA NA NA NA 73.33 NA 70.00 92.86 NA NA 56.25 NA 46.15 68.18 NA 61.11 NA 71.43 NA NA NA 90.00 88.24 NA 64.29 NA NA NA 80.00 NA 60.00 72.73 K jcn_only_AD CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25318474_25319136;chr3R_25318474_25319163;chr3R_25318474_25319142;chr3R_25318474_25318925;chr3R_25318474_25319093;chr3R_25318474_25318971;chr3R_25318474_25319004 chr3R_25318474_25319167 chr3R_25318374_25318473;chr3R_25319168_25319224 69.95 75.81 61.96 60.49 75.39 64.02 57.14 76.43 72.22 70.41 58.62 63.43 70.07 63.11 65.54 61.37 69.95 70.56 67.40 63.15 58.19 73.81 72.25 77.80 72.41 66.11 70.62 64.49 54.77 76.17 56.62 63.83 36.89 70.37 66.30 66.06 78.95 73.20 71.60 66.90 30.77 71.80 68.18 73.54 56.23 61.70 71.39 41.12 72.69 73.10 73.26 72.45 73.29 70.38 65.29 77.08 76.26 54.49 K intron_retention Actn,I_chrX_1929229_1936079,I_chrX_1935678_1936079,I_chrX_1935889_1936079 chrX - chrX_1935889_1936079 chrX_1935888_1935889;chrX_1936079_1936080 chrX_1935789_1935888;chrX_1936080_1936110 87.50 NA NA NA NA NA 100.00 NA 69.23 NA NA 100.00 NA NA NA 87.50 NA 40.00 NA 63.64 NA NA 88.89 NA NA NA NA NA NA NA 100.00 NA NA 90.00 NA NA NA NA NA 53.85 NA 90.00 NA NA NA NA NA 77.78 84.62 NA 87.50 NA NA NA 88.89 NA NA NA K intron_retention betaTub60D chr2R + chr2R_20198354_20198418 chr2R_20198353_20198354;chr2R_20198418_20198419 chr2R_20198245_20198353;chr2R_20198419_20198660 4.51 0.00 0.00 5.19 3.23 0.00 2.00 5.37 2.71 3.75 0.00 4.69 0.00 1.87 3.35 3.41 4.83 0.00 1.52 4.51 0.00 5.50 6.08 5.45 5.77 3.97 5.94 5.13 5.98 0.00 0.00 5.70 7.22 5.16 5.73 4.76 3.94 2.50 4.20 2.71 5.92 4.86 3.23 3.41 6.25 6.15 5.90 5.18 4.46 4.07 5.66 4.79 0.00 4.71 3.98 5.85 6.04 7.43 K intron_retention CG6695 chr3R + chr3R_20483336_20484042 chr3R_20483335_20483336;chr3R_20484042_20484043 chr3R_20483238_20483335;chr3R_20484043_20484133 52.63 41.67 NA NA NA NA NA 60.00 62.50 NA NA 61.54 NA NA 87.50 88.89 NA NA NA 78.57 NA 41.67 55.56 41.18 NA NA 41.67 71.43 NA NA 60.00 NA 50.00 NA NA 77.78 45.45 NA 45.00 52.63 46.67 65.00 NA 42.11 33.33 50.00 NA 55.00 73.33 46.15 50.00 54.55 60.00 30.77 NA 41.67 45.45 56.25 K intron_retention Gs2 chrX + chrX_11323207_11323271 chrX_11323206_11323207;chrX_11323271_11323272 chrX_11323015_11323206;chrX_11323272_11324204 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.35 0.00 0.00 2.56 0.00 0.00 2.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rpn9 chr3R - chr3R_19557704_19557764 chr3R_19557703_19557704;chr3R_19557764_19557765 chr3R_19557225_19557703;chr3R_19557765_19558295 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1673 chrX + chrX_13293973_13294039 chrX_13293972_13293973;chrX_13294039_13294040 chrX_13293666_13293972;chrX_13294040_13294194 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.72 0.00 0.00 0.43 0.00 0.52 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 1.07 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.42 0.00 0.00 0.31 0.58 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Akt1 chr3R + chr3R_11926502_11926621;chr3R_11924988_11926621;chr3R_11925318_11926621;chr3R_11925014_11926621 chr3R_11925383_11926621 chr3R_11926622_11926719;chr3R_11924974_11924987 35.00 NA NA 35.00 NA NA 40.00 23.68 17.86 NA NA 25.93 NA NA NA 60.00 NA NA NA 46.15 NA 17.50 44.83 52.17 NA NA 50.00 NA 19.05 NA NA NA 17.65 29.17 NA NA 19.23 NA NA 33.33 NA 37.50 NA NA NA NA NA NA 40.00 NA 74.19 NA NA NA NA NA NA NA K intron_retention LIMK1,CG1824,I_chrX_12488942_12489000 chrX - chrX_12487646_12487908 chrX_12487645_12487646;chrX_12487908_12487909 chrX_12487040_12487645;chrX_12487909_12488925 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 2.22 0.00 10.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 3.45 2.08 0.00 3.12 4.76 0.00 3.70 1.85 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 6.25 0.00 K jcn_only_AA Tango5,noncoding_22970,I_chrX_10659836_10661185 chrX - chrX_10656236_10658202 chrX_10656468_10658202 chrX_10658203_10658269;chrX_10655948_10656235 96.34 87.76 98.85 93.07 90.79 97.22 89.01 93.64 97.84 93.75 94.57 96.34 98.21 97.18 96.06 100.00 100.00 94.67 94.68 94.57 91.46 97.14 96.70 96.97 100.00 96.20 100.00 97.78 95.65 94.83 100.00 96.88 98.53 97.46 98.04 97.56 97.86 100.00 92.31 92.59 96.97 95.32 95.08 97.01 93.55 92.31 100.00 93.33 95.68 90.91 95.38 98.41 100.00 96.00 95.28 97.78 91.30 100.00 K intron_retention sd,noncoding_23930,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15707640_15707881 chrX_15707639_15707640;chrX_15707881_15707882 chrX_15707634_15707639;chrX_15707882_15708324 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 94.12 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K alternative_donor CG13510,F_chr2R_18548367_18550224,R_chr2R_18548408_18548573,I_chr2R_18551419_18551493 chr2R + chr2R_18548367_18548573 chr2R_18548408_18548573 chr2R_18548574_18548673;chr2R_18548308_18548366 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Treh,I_chr2R_16972565_16972702,I_chr2R_16975359_16975442,RI_chr2R_16975359_16975842,I_chr2R_16975364_16975842 chr2R + chr2R_16975359_16975442 chr2R_16975364_16975442 chr2R_16975443_16975450;chr2R_16975286_16975358 100.00 100.00 100.00 98.86 100.00 100.00 99.04 100.00 100.00 98.78 100.00 98.60 100.00 100.00 100.00 98.96 100.00 98.75 100.00 100.00 98.77 100.00 100.00 100.00 97.01 98.70 100.00 100.00 100.00 98.67 100.00 100.00 98.90 99.25 100.00 97.47 100.00 97.56 100.00 99.44 100.00 100.00 100.00 100.00 100.00 100.00 98.85 100.00 100.00 98.94 99.22 100.00 100.00 100.00 100.00 100.00 99.08 100.00 K intron_retention Gos28,CG31231 chr3R + chr3R_14490720_14490789 chr3R_14490719_14490720;chr3R_14490789_14490790 chr3R_14490331_14490719;chr3R_14490790_14491037 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261460_263086 chr4_261459_261460;chr4_263086_263087 chr4_261360_261459;chr4_263087_263108 25.00 NA 28.57 NA NA 7.14 44.00 24.32 16.33 NA NA 29.63 30.77 27.27 NA 38.24 NA NA 10.53 12.50 NA NA NA NA NA NA NA NA NA NA 18.75 NA NA 25.00 NA NA NA NA NA 26.32 NA 16.67 33.33 NA NA NA NA NA 18.52 NA 25.00 NA NA NA 14.29 NA NA NA K jcn_only_AA Ddip2,I_chr3L_252498_252538,I_chr3L_252776_253313 chr3L - chr3L_252464_252538 chr3L_252482_252538 chr3L_252539_252638;chr3L_252398_252463 100.00 97.87 100.00 98.88 100.00 97.73 100.00 99.00 98.68 94.44 96.97 98.53 100.00 97.78 100.00 98.39 100.00 97.62 98.55 98.84 100.00 100.00 97.96 100.00 NA 100.00 100.00 95.65 97.56 96.55 98.84 97.96 100.00 97.85 100.00 100.00 100.00 95.24 100.00 99.02 100.00 97.67 100.00 96.61 100.00 100.00 96.15 100.00 98.72 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 K intron_retention CG33558,I_chr2R_2816779_2817354,I_chr2R_2820149_2820628,EI_chr2R_2820947_2821570,CREI_chr2R_2832933_2850384 chr2R - chr2R_2820203_2820628 chr2R_2820202_2820203;chr2R_2820628_2820629 chr2R_2819348_2820202;chr2R_2820629_2820728 6.67 9.52 11.11 5.26 10.53 NA NA 19.35 14.63 NA NA 5.71 NA 0.00 9.09 14.29 8.00 10.53 9.09 8.89 6.67 6.67 7.69 5.26 5.26 0.00 5.56 NA 0.00 8.33 6.90 7.41 0.00 17.65 0.00 0.00 5.71 0.00 0.00 10.17 6.67 15.38 8.33 6.90 0.00 2.13 0.00 6.56 10.53 3.70 20.00 NA 0.00 3.45 14.29 0.00 0.00 0.00 K intron_retention I_chr2R_11822418_11822485,CG8297 chr2R + chr2R_11822429_11822485 chr2R_11822428_11822429;chr2R_11822485_11822486 chr2R_11822349_11822428;chr2R_11822486_11822585 0.00 0.00 0.00 1.14 0.00 1.75 4.00 0.98 0.79 0.00 0.00 2.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 4.55 5.56 0.00 NA 9.23 10.00 NA 20.00 NA 3.03 NA NA 1.30 NA NA 6.06 NA NA 0.00 NA 0.00 0.00 6.67 4.35 NA NA NA 1.54 0.00 0.00 0.00 11.11 NA 2.53 0.00 0.00 NA K alternative_donor Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2364640;chr2L_2361586_2364480;chr2L_2361586_2364836;chr2L_2361586_2365060;chr2L_2361586_2364302;chr2L_2361586_2364594;chr2L_2361586_2364312 chr2L_2361586_2364889 chr2L_2361486_2361585;chr2L_2365061_2365065 54.93 55.56 56.41 57.75 65.71 51.52 58.73 56.25 55.36 61.11 66.67 54.93 58.82 60.53 60.98 61.29 61.11 59.38 61.70 53.64 67.57 42.86 51.28 46.88 57.69 60.00 47.83 31.25 33.33 28.57 48.89 36.00 26.53 56.58 34.62 20.83 64.10 61.90 63.16 34.29 25.00 54.32 57.14 37.04 36.11 30.43 50.00 29.41 53.09 68.00 44.44 55.17 33.33 50.00 59.09 48.15 56.41 27.78 K intron_retention CG18445,I_chr2R_5927355_5927472 chr2R - chr2R_5926018_5926085 chr2R_5926017_5926018;chr2R_5926085_5926086 chr2R_5925685_5926017;chr2R_5926086_5926433 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.24 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive CG11155,I_chr4_1151213_1151903,I_chr4_1152220_1152710,I_chr4_1152585_1152687 chr4 + chr4_1152220_1152710,chr4_1153200_1154500 chr4_1152220_1152326,chr4_1152585_1154500 chr4_1152711_1153199 chr4_1152327_1152584 chr4_1152120_1152219;chr4_1154501_1154522 85.71 83.33 87.50 92.31 75.00 88.89 90.91 94.44 92.31 75.00 NA 93.75 87.50 90.91 83.33 92.31 100.00 87.50 83.33 90.91 100.00 NA 75.00 85.71 80.00 83.33 75.00 75.00 75.00 75.00 91.67 NA NA 93.33 85.71 75.00 NA 80.00 75.00 83.33 NA 80.00 100.00 87.50 NA 66.67 100.00 80.00 90.00 85.71 88.89 85.71 NA NA 85.71 NA 85.71 66.67 K intron_retention scrib,I_chr3R_22362324_22363015,I_chr3R_22381374_22399575,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22362254_22363092 chr3R_22362253_22362254;chr3R_22363092_22363093 chr3R_22362235_22362253;chr3R_22363093_22363115 17.65 20.00 20.51 13.41 22.22 14.81 18.87 12.99 19.28 NA 23.33 16.67 24.14 17.50 13.64 20.83 6.45 12.50 24.44 10.42 21.88 11.22 34.00 16.67 36.84 20.51 30.56 21.43 14.00 9.89 12.20 11.11 10.06 16.13 10.94 27.12 33.33 12.50 37.84 20.97 18.75 15.79 15.79 17.65 35.48 12.20 30.00 15.22 14.93 11.76 20.37 17.65 26.32 NA 14.81 17.65 22.22 20.29 K alternative_donor mav,RI_chr4_645290_646129 chr4 - chr4_645568_646129 chr4_645568_645616 chr4_645398_645567;chr4_646130_646229 100.00 94.74 95.45 100.00 91.67 100.00 97.78 97.83 98.21 100.00 100.00 97.37 100.00 96.43 95.45 98.21 95.45 100.00 97.30 97.37 83.33 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 88.89 97.44 95.83 100.00 100.00 95.24 100.00 93.75 98.00 100.00 95.65 100.00 100.00 100.00 100.00 92.31 92.31 100.00 K jcn_only_AA CG7091,RI_chr3R_8805541_8805680,I_chr3R_8809774_8809832 chr3R + chr3R_8804833_8804890 chr3R_8804833_8804873 chr3R_8804612_8804832;chr3R_8804891_8805199 3.45 5.77 1.47 2.53 2.08 10.81 3.17 1.59 0.91 NA 3.70 3.45 0.00 0.00 0.00 0.00 0.00 0.00 4.00 3.57 6.25 2.33 5.00 5.26 NA 0.00 6.45 4.17 NA 3.45 5.71 4.35 NA 4.84 4.00 NA 3.39 6.45 5.88 7.14 NA 2.08 0.00 NA NA 0.00 0.00 11.54 4.17 3.12 6.25 3.70 12.50 NA 2.82 8.11 0.00 0.00 K alternative_donor dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21309092_21310000;chr2L_21309092_21309945;chr2L_21309092_21309994;chr2L_21309092_21309938 chr2L_21309092_21309579 chr2L_21308992_21309091;chr2L_21310001_21310009 66.67 NA 63.16 73.08 56.25 NA 65.38 58.33 65.31 77.78 56.52 61.54 75.00 66.67 56.52 78.26 NA NA 65.00 63.79 64.71 69.57 86.96 76.19 NA 50.00 75.00 80.00 75.00 NA 66.67 72.73 75.56 65.38 78.57 83.33 NA 66.67 66.67 64.29 NA 63.16 NA 79.17 58.33 70.59 NA 74.36 66.67 NA NA 64.71 NA NA 66.67 NA NA NA K intron_retention PP2A-B' chr3R + chr3R_14001957_14002028 chr3R_14001956_14001957;chr3R_14002028_14002029 chr3R_14001726_14001956;chr3R_14002029_14002421 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_donor I_chrX_4000307_4003527,CG4857 chrX + chrX_4011929_4011996;chrX_4011315_4011996;chrX_4011270_4011996 chrX_4011429_4011996 chrX_4011997_4012308;chrX_4011093_4011269 0.00 0.00 0.00 25.00 0.00 0.00 24.14 0.00 20.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 24.00 4.17 0.00 0.00 0.00 23.68 0.00 0.00 0.00 0.00 0.00 0.00 14.29 8.00 0.00 29.03 0.00 0.00 0.00 0.00 0.00 10.34 16.28 0.00 19.57 28.57 0.00 0.00 0.00 0.00 25.00 23.91 0.00 16.13 0.00 0.00 0.00 28.57 0.00 23.08 0.00 K jcn_only_AD Atg2 chr3L + chr3L_2774487_2774567 chr3L_2774494_2774567 chr3L_2774568_2780718;chr3L_2774319_2774486 33.33 48.00 NA 34.38 NA NA 26.32 42.31 39.47 NA NA 36.17 28.00 NA 50.00 18.92 NA NA 45.00 25.00 NA 38.30 28.21 45.00 NA NA NA NA NA 40.91 30.56 NA 28.57 44.83 41.67 33.33 30.43 25.00 NA 33.33 NA 41.94 NA 36.36 NA NA NA 26.67 30.00 NA 26.67 30.00 29.17 NA 39.39 33.33 NA NA K intron_retention scarface,RI_chr2R_1568023_1569369,I_chr2R_1568023_1571968,I_chr2R_1568023_1575180 chr2R - chr2R_1568023_1572308 chr2R_1568022_1568023;chr2R_1572308_1572309 chr2R_1567923_1568022;chr2R_1572309_1572482 0.00 2.11 0.00 1.21 0.00 0.00 2.78 0.00 1.28 0.00 0.00 0.00 0.00 0.00 1.22 1.79 0.00 2.70 0.00 1.39 0.00 3.68 0.00 2.94 5.08 0.00 3.30 4.44 0.00 0.00 0.93 0.00 1.18 0.00 2.38 1.09 0.00 2.27 0.00 1.43 3.77 0.72 0.00 0.00 0.00 2.02 0.00 1.89 0.00 9.09 0.94 3.28 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Tpr2 chr2L + chr2L_16492052_16505495 chr2L_16492052_16497010 chr2L_16491573_16492051 0.25 0.33 0.29 0.67 0.00 0.00 1.02 0.46 0.32 0.00 0.00 0.22 0.44 0.41 0.32 0.00 0.42 0.00 0.31 0.15 0.00 1.80 0.20 0.29 0.50 0.00 0.30 0.00 0.35 0.36 0.38 0.57 0.23 0.47 1.13 1.61 0.00 0.61 0.25 0.51 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.43 0.00 0.59 0.60 0.00 0.00 0.00 K intron_retention CG12703 chrX + chrX_19650836_19650903 chrX_19650835_19650836;chrX_19650903_19650904 chrX_19650645_19650835;chrX_19650904_19651001 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.93 2.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor eIF-2beta,RI_chr3L_12519486_12519541 chr3L - chr3L_12519486_12519688;chr3L_12519486_12519541;chr3L_12519486_12519590 chr3L_12519486_12519596 chr3L_12519386_12519485;chr3L_12519689_12519829 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1513,I_chr2R_5778649_5778739 chr2R - chr2R_5772807_5772865 chr2R_5772806_5772807;chr2R_5772865_5772866 chr2R_5772705_5772806;chr2R_5772866_5773017 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 7.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Csk,I_chr3R_7463337_7463512,I_chr3R_7468917_7472437,I_chr3R_7468917_7472509,I_chr3R_7468928_7472509 chr3R - chr3R_7468928_7472437 chr3R_7468927_7468928;chr3R_7472437_7472438 chr3R_7468892_7468927;chr3R_7472438_7472537 69.23 75.00 80.00 61.11 NA 70.00 80.00 69.23 68.97 NA NA 58.82 66.67 78.57 50.00 83.33 75.00 NA 50.00 77.78 NA NA 53.85 NA NA NA 61.54 NA NA NA 66.67 NA NA 61.90 NA NA NA NA NA NA NA 56.25 NA 80.00 NA NA NA NA 77.78 NA 75.00 72.73 NA NA 61.54 NA NA NA K cassette Mbs,I_chr3L_16045251_16046108,I_chr3L_16057100_16057329 chr3L + chr3L_16070383_16073858;chr3L_16070383_16071919 chr3L_16070383_16070822;chr3L_16070910_16071919,chr3L_16070910_16073858 chr3L_16070823_16070909 chr3L_16070292_16070382;chr3L_16073859_16074854 0.98 1.43 0.87 0.49 0.00 1.00 0.69 1.49 1.00 0.00 1.14 0.53 0.79 0.88 0.83 0.56 0.00 0.00 0.78 1.58 1.19 1.02 1.03 2.35 0.00 0.83 1.03 0.00 1.89 0.00 0.88 0.00 1.06 0.53 2.60 1.20 1.05 0.00 1.12 1.52 0.00 0.90 1.09 1.41 0.00 1.37 1.72 1.00 0.95 1.45 1.30 1.27 0.00 0.00 1.52 1.27 0.00 0.98 K jcn_only_AA Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8089737_8102299;chr2L_8089737_8105691 chr2L_8089737_8105696 chr2L_8089558_8089736 0.19 0.21 0.35 0.18 1.38 0.00 0.18 0.23 0.14 0.00 0.00 0.09 0.00 0.00 0.16 0.09 0.14 0.38 0.00 0.36 0.21 0.19 0.43 0.41 0.29 0.17 0.33 0.00 0.00 0.41 0.00 0.47 0.00 0.16 0.24 0.23 0.79 0.74 0.55 0.44 0.35 0.00 0.17 0.00 0.51 0.23 0.00 0.25 0.00 0.00 0.34 0.00 0.00 0.45 0.34 0.33 0.53 0.00 K alternative_acceptor kel,I_chr2L_18134827_18137476,I_chr2L_18135502_18135573 chr2L - chr2L_18134827_18135573 chr2L_18135502_18135573 chr2L_18135574_18135673;chr2L_18134727_18134826 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention Gs1l,I_chr2L_4456517_4456723 chr2L - chr2L_4455739_4456113 chr2L_4455738_4455739;chr2L_4456113_4456114 chr2L_4455221_4455738;chr2L_4456114_4456332 20.37 18.89 42.11 52.94 15.69 28.89 15.94 25.81 17.24 14.55 9.52 16.39 8.00 18.92 17.81 76.47 18.75 20.00 25.00 20.66 20.93 47.73 21.98 24.36 12.90 28.57 29.09 27.08 14.47 27.66 45.21 18.03 25.81 18.75 17.39 32.61 18.58 14.44 25.00 17.82 15.07 18.55 23.08 14.46 17.12 15.79 27.78 20.69 22.35 27.12 21.74 22.00 18.37 15.29 15.52 22.37 23.21 20.37 K alternative_donor I_chr3L_3151185_3151263,CG32280 chr3L + chr3L_3165222_3167941;chr3L_3165255_3167941;chr3L_3165352_3167941;chr3L_3165704_3167941;chr3L_3165407_3167941 chr3L_3165390_3167941 chr3L_3167942_3168265;chr3L_3165212_3165221 0.00 NA NA 0.00 NA NA 33.33 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 NA NA NA 16.67 0.00 NA NA NA NA NA 25.00 NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA 0.00 0.00 K jcn_only_AA B4,I_chr2L_13513474_13549131,I_chr2L_13547133_13549131,I_chr2L_13547162_13547692,I_chr2L_13547304_13549131 chr2L - chr2L_13547304_13549131;chr2L_13547162_13549131 chr2L_13547133_13549131 chr2L_13549132_13549231;chr2L_13547062_13547132 2.78 3.23 13.33 2.44 4.35 4.17 3.03 0.00 2.27 0.00 NA 5.00 NA NA 7.41 0.00 4.00 NA 3.12 3.77 4.17 0.00 1.79 5.45 0.00 4.00 2.56 2.50 5.41 3.77 2.78 NA 4.29 5.56 0.00 0.00 2.70 2.86 1.92 0.00 4.65 0.00 0.00 0.00 2.27 1.64 10.53 2.08 0.00 2.86 0.00 0.00 NA 3.23 4.88 8.33 3.12 0.00 K intron_retention CG6678 chr3R + chr3R_17713314_17713756 chr3R_17713313_17713314;chr3R_17713756_17713757 chr3R_17712862_17713313;chr3R_17713757_17714276 14.29 NA NA NA NA NA NA NA 41.67 NA NA NA NA NA 13.33 NA NA NA NA NA NA NA 15.38 NA NA NA NA NA 11.11 NA NA NA 7.69 NA NA 13.33 NA NA 14.29 25.00 20.00 NA NA NA NA 26.67 NA 12.00 14.29 NA NA NA NA NA NA NA NA 0.00 K intron_retention didum,I_chr2R_3393005_3393348 chr2R + chr2R_3390701_3391153 chr2R_3390700_3390701;chr2R_3391153_3391154 chr2R_3390677_3390700;chr2R_3391154_3391267 3.23 NA NA NA NA NA NA 20.00 13.79 NA NA 19.05 NA NA NA 0.00 NA NA 0.00 6.45 NA NA 0.00 20.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA 18.18 NA NA NA NA NA NA 9.38 NA NA NA NA NA 0.00 NA NA NA K jcn_only_AD E_chr4_592469_594231,Ephrin,I_chr4_595055_597604,RI_chr4_596272_596341 chr4 + chr4_592646_594238;chr4_592490_594238;chr4_592593_594238;chr4_592469_594238;chr4_592410_594238;chr4_592798_594238 chr4_592737_594238 chr4_594239_594331;chr4_592404_592409 8.70 14.81 8.70 8.33 12.00 3.57 13.68 10.00 5.81 NA NA 11.39 0.00 0.00 5.88 3.49 3.12 NA 4.26 9.68 24.14 NA 3.70 NA 8.70 18.75 18.18 NA NA NA 9.68 NA NA 2.53 4.17 14.29 NA NA NA 6.67 NA 6.45 8.82 10.71 NA NA NA NA 7.23 NA 8.11 9.09 NA NA 9.09 NA NA NA K intron_retention sqh,I_chrX_6118150_6118800 chrX - chrX_6117545_6117617 chrX_6117544_6117545;chrX_6117617_6117618 chrX_6117090_6117544;chrX_6117618_6118149 0.08 0.13 0.00 0.55 0.00 0.14 0.37 0.23 0.08 0.00 0.17 0.08 0.00 0.37 0.39 0.00 0.46 0.32 0.19 0.06 0.00 0.00 0.00 0.00 0.14 0.32 0.46 1.22 0.17 0.00 0.00 0.00 0.00 0.21 0.28 0.00 0.21 0.00 0.00 0.31 0.36 0.22 0.00 0.00 0.12 0.07 0.00 0.00 0.42 0.19 0.00 0.00 0.00 0.00 0.00 0.24 0.17 0.00 K jcn_only_AA E(bx),I_chr3L_240127_240176,I_chr3L_246324_246699 chr3L - chr3L_240114_240176;chr3L_240111_240176;chr3L_240117_240176 chr3L_240127_240176 chr3L_240177_240276;chr3L_240027_240110 2.82 2.94 1.98 1.10 8.47 1.89 3.36 0.73 2.00 0.00 4.17 1.23 4.11 5.97 0.00 7.00 0.00 2.20 2.35 0.45 1.39 4.76 1.05 3.95 7.69 4.76 1.96 6.25 3.00 1.39 6.25 5.45 2.68 1.57 4.62 2.04 1.01 7.69 1.05 3.54 4.92 3.62 3.33 2.33 5.95 1.67 1.43 3.24 2.82 4.08 0.00 1.96 1.72 5.08 5.21 0.00 5.77 3.70 K alternative_acceptor RhoGAP5A,C_chrX_5514320_5515557 chrX - chrX_5511062_5511153 chrX_5511090_5511153 chrX_5511154_5511259;chrX_5510684_5511061 100.00 96.55 100.00 100.00 100.00 95.00 100.00 100.00 97.14 100.00 100.00 100.00 90.91 100.00 100.00 94.12 100.00 100.00 100.00 98.08 100.00 97.22 97.78 98.15 96.67 100.00 97.50 96.30 96.67 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 100.00 100.00 96.43 98.53 98.25 95.00 100.00 100.00 100.00 97.37 100.00 100.00 97.73 95.24 97.78 97.96 97.87 K alternative_acceptor Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654157,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15652351_15654272 chrX_15652363_15654272 chrX_15654273_15654284;chrX_15652263_15652350 25.39 NA NA NA NA NA 7.14 18.75 22.22 NA NA NA NA NA NA 40.00 NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA 21.43 NA NA NA NA NA NA NA 44.44 NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA NA NA K intron_retention exo84 chr3R - chr3R_21876423_21876481 chr3R_21876422_21876423;chr3R_21876481_21876482 chr3R_21875893_21876422;chr3R_21876482_21877254 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CtBP chr3R + chr3R_8843123_8845063 chr3R_8843122_8843123;chr3R_8845063_8845064 chr3R_8842883_8843122;chr3R_8845064_8845536 92.00 NA 81.82 92.00 NA 100.00 96.97 91.67 95.24 NA NA 95.65 93.75 95.83 100.00 90.91 90.91 91.67 94.74 94.12 NA 88.89 NA NA NA 86.67 NA NA 88.89 NA 92.31 NA NA 82.61 NA 100.00 NA NA NA 100.00 NA 83.33 91.67 NA NA NA NA NA 86.67 NA NA NA NA NA 93.75 NA NA 77.78 K alternative_acceptor ena chr2R + chr2R_15046858_15047299 chr2R_15046858_15047287 chr2R_15046625_15046857;chr2R_15047300_15047324 12.50 17.58 11.11 17.58 14.58 14.58 13.21 12.98 13.03 13.54 9.43 10.17 12.31 11.11 13.11 12.50 17.50 17.50 15.19 11.85 8.54 17.42 10.43 12.39 15.87 15.79 11.11 12.77 14.02 11.54 12.24 11.97 9.07 9.22 14.17 24.46 14.71 22.58 12.75 11.70 11.11 12.50 14.93 16.83 9.21 12.33 10.11 11.86 12.67 11.43 8.24 19.61 9.63 10.42 13.98 20.00 10.71 10.30 K jcn_only_AD CaMKI,I_chr4_466377_467256,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,RI_chr4_467374_467424,RI_chr4_467482_467543,I_chr4_467862_471815,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_466275_467726;chr4_466377_467726;chr4_467662_467726;chr4_466798_467726;chr4_467273_467726 chr4_466592_467726 chr4_467727_467826;chr4_466269_466274 0.00 0.00 NA 3.23 NA 5.00 0.00 0.00 1.47 NA NA 5.41 0.00 0.00 NA 0.00 0.00 NA 0.00 3.12 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 3.03 0.00 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention I_chrX_1798310_1798525,eIF2B-epsilon chrX - chrX_1816503_1816575 chrX_1816502_1816503;chrX_1816575_1816576 chrX_1815214_1816502;chrX_1816576_1816700 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 2.84 0.00 3.48 1.31 1.52 0.00 2.99 1.80 2.86 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.65 0.00 0.00 2.34 0.00 0.00 0.00 0.00 0.00 1.96 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 K jcn_only_AA I_chr2L_18697359_18697402,CG10341 chr2L + chr2L_18698977_18699038 chr2L_18698977_18699035 chr2L_18698833_18698976;chr2L_18699039_18700647 97.73 100.00 97.73 98.31 NA 96.88 97.10 100.00 97.78 NA 100.00 95.83 97.14 94.12 100.00 95.24 100.00 97.56 97.22 97.78 93.10 97.37 96.72 98.00 97.44 93.33 96.23 97.14 100.00 100.00 100.00 94.59 100.00 96.20 97.73 100.00 100.00 97.30 100.00 98.28 NA 94.74 100.00 94.74 93.55 100.00 98.63 100.00 100.00 96.30 100.00 100.00 97.22 100.00 100.00 95.24 97.67 95.59 K intron_retention cul-5 chr3R - chr3R_24886263_24886322 chr3R_24886262_24886263;chr3R_24886322_24886323 chr3R_24886084_24886262;chr3R_24886323_24886680 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG9875,CG34423,CG34424 chr2R + chr2R_19245870_19246355 chr2R_19246291_19246355 chr2R_19246356_19246419;chr2R_19245763_19245869 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 87.50 100.00 100.00 85.71 85.71 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG14425,Sxl,CG14425_Sxl,CEF_chrX_6984538_6992033 chrX - chrX_6991093_6992033 chrX_6991092_6991093;chrX_6992033_6992034 chrX_6991031_6991092;chrX_6992034_6992068 30.00 NA NA 9.09 NA NA NA 33.33 30.00 NA NA NA NA NA NA NA NA NA NA 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA K intron_retention CG6006 chr3R + chr3R_11993931_11994137 chr3R_11993930_11993931;chr3R_11994137_11994138 chr3R_11993663_11993930;chr3R_11994138_11994429 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 1.96 0.00 0.00 0.00 0.00 3.57 0.00 2.63 0.00 0.00 0.00 0.00 0.00 2.56 1.96 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette stj chr2R + chr2R_9698342_9701304 chr2R_9698342_9699942;chr2R_9699997_9701304 chr2R_9699943_9699996 chr2R_9698258_9698341;chr2R_9701305_9701385 5.88 7.69 5.26 9.09 6.67 5.56 3.57 10.53 4.44 3.45 NA 19.23 4.76 5.88 4.35 NA 5.26 3.45 NA 5.13 NA 4.35 13.04 10.00 4.55 0.00 5.00 NA 6.25 7.14 8.33 NA 4.17 5.26 NA 4.88 3.77 8.33 6.25 0.00 7.69 8.70 NA 6.45 6.25 5.88 3.85 18.18 6.67 NA 6.45 4.55 8.33 NA 4.55 6.25 9.52 16.33 K intron_retention CG8974 chrX - chrX_15688235_15688299 chrX_15688234_15688235;chrX_15688299_15688300 chrX_15687752_15688234;chrX_15688300_15688392 0.00 0.00 0.80 0.00 0.00 0.00 0.45 0.53 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.86 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.71 1.00 2.11 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG17255,I_chrX_10359089_10359175,RI_chrX_10366177_10367270 chrX - chrX_10359089_10359175 chrX_10359101_10359175 chrX_10359176_10359275;chrX_10358989_10359088 99.65 99.32 98.82 100.00 100.00 100.00 100.00 100.00 98.94 100.00 98.70 100.00 100.00 100.00 99.07 100.00 100.00 98.99 100.00 99.54 100.00 99.59 99.10 98.64 98.50 100.00 99.07 99.32 98.72 100.00 100.00 100.00 100.00 99.12 100.00 99.22 99.65 100.00 99.13 99.53 100.00 99.56 100.00 99.19 100.00 100.00 99.44 99.21 100.00 100.00 99.43 98.75 100.00 97.97 98.25 100.00 98.09 98.77 K intron_retention pod1 chrX + chrX_6703171_6703517 chrX_6703170_6703171;chrX_6703517_6703518 chrX_6703097_6703170;chrX_6703518_6703690 0.00 0.00 0.00 1.89 0.00 2.50 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 NA 2.86 0.00 0.00 0.00 K intron_retention CG10063,I_chr3L_6967574_6972726 chr3L - chr3L_6965330_6965391 chr3L_6965329_6965330;chr3L_6965391_6965392 chr3L_6964675_6965329;chr3L_6965392_6965603 41.67 NA NA 66.67 NA NA 36.36 41.67 40.00 NA NA NA NA NA NA 81.82 NA NA NA 41.67 NA 47.06 NA NA NA NA NA NA NA NA 69.23 NA NA NA NA NA NA NA NA 37.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N intron_retention CG1513,I_chr2R_5778649_5778739 chr2R - chr2R_5771508_5772126 chr2R_5771507_5771508;chr2R_5772126_5772127 chr2R_5771402_5771507;chr2R_5772127_5772213 15.38 NA NA 12.50 NA NA 22.73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13414818_13414880 chr2R_13414821_13414880 chr2R_13414881_13414944;chr2R_13414719_13414817 99.44 98.74 98.29 99.50 100.00 98.90 99.43 98.96 100.00 98.89 100.00 100.00 100.00 100.00 100.00 99.44 100.00 100.00 97.12 98.77 100.00 100.00 98.33 100.00 100.00 99.22 99.35 100.00 99.26 98.81 100.00 100.00 99.18 98.82 98.63 98.61 98.84 100.00 98.95 100.00 98.02 99.26 100.00 100.00 100.00 100.00 98.73 99.01 99.58 97.50 99.46 99.25 97.18 100.00 100.00 100.00 98.55 98.45 K cassette Mical,I_chr3R_5847106_5863537,R_chr3R_5853098_5863533,I_chr3R_5863483_5863537,I_chr3R_5863613_5868513 chr3R - chr3R_5847106_5863537 chr3R_5847106_5853051;chr3R_5853104_5863537 chr3R_5853052_5853103 chr3R_5847006_5847105;chr3R_5863538_5863561 90.00 85.71 90.91 94.74 100.00 NA 65.00 83.33 82.76 77.78 90.91 94.44 81.82 85.71 90.00 91.67 83.33 80.00 92.86 93.33 90.00 96.43 80.00 90.00 55.56 88.89 81.82 70.00 91.67 93.75 88.89 NA 90.00 82.61 88.89 72.73 94.12 87.50 90.00 90.91 NA 95.83 87.50 88.24 NA 100.00 NA 91.67 94.12 NA 93.33 NA 87.50 NA 100.00 NA NA NA K alternative_donor Tsp66E chr3L + chr3L_8905872_8906068;chr3L_8905846_8906068 chr3L_8905697_8906068 chr3L_8906069_8906085;chr3L_8905674_8905696 20.00 NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Vha100-1,I_chr3R_24958227_24960770,RI_chr3R_24959152_24959582,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24959152_24960770 chr3R_24959151_24959152;chr3R_24960770_24960771 chr3R_24959060_24959151;chr3R_24960771_24960870 8.51 8.82 0.00 14.71 0.00 9.09 17.39 6.90 17.31 0.00 22.22 19.51 5.26 21.05 6.67 3.85 5.26 14.29 4.76 16.28 0.00 26.32 10.47 7.69 11.11 3.85 11.11 7.32 9.52 7.69 0.00 0.00 4.11 13.16 6.67 4.55 10.14 14.89 9.86 17.02 2.99 9.38 0.00 8.33 6.12 10.64 9.30 9.23 8.51 3.23 11.69 10.71 5.71 8.57 15.38 0.00 5.56 5.63 K jcn_only_AA frtz chr2L - chr2L_1714474_1715138;chr2L_1714406_1715138 chr2L_1714427_1715138 chr2L_1715139_1715811;chr2L_1714173_1714405 0.00 NA NA 8.33 NA NA 0.00 0.00 2.17 NA NA 2.44 NA NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 4.35 2.50 0.00 0.00 0.00 NA 0.00 NA 0.00 4.35 NA NA NA 0.00 0.00 2.56 0.00 NA NA 0.00 NA 0.00 NA K intron_retention CG9086,CEI_chrX_16859981_16861527,I_chrX_16861895_16862053 chrX - chrX_16861895_16862542 chrX_16861894_16861895;chrX_16862542_16862543 chrX_16861795_16861894;chrX_16862543_16862684 6.06 0.00 10.71 12.00 15.38 0.00 5.56 7.50 9.68 0.00 NA 0.00 10.71 0.00 7.69 7.55 9.52 0.00 3.85 3.92 5.26 3.85 12.90 22.22 NA 17.65 0.00 NA NA 6.25 5.13 NA NA 4.65 0.00 0.00 0.00 NA 12.50 0.00 NA 15.38 8.70 15.00 NA 6.67 NA 0.00 6.06 NA 9.09 14.29 NA NA 3.85 NA NA NA K intron_retention noncoding_10144,CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2429430_2434625 chr3L_2429429_2429430;chr3L_2434625_2434626 chr3L_2429383_2429429;chr3L_2434626_2434645 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA 0.00 NA 0.00 8.82 11.11 0.00 NA NA 3.70 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA K intron_retention phtf,I_chr2R_2629598_2630209 chr2R + chr2R_2632283_2632342 chr2R_2632282_2632283;chr2R_2632342_2632343 chr2R_2632108_2632282;chr2R_2632343_2632699 12.25 12.00 NA 21.21 17.65 4.35 13.04 17.65 13.64 15.38 0.00 15.79 NA 12.50 7.41 22.22 0.00 9.09 14.29 8.16 17.39 40.00 15.38 17.39 0.00 NA 20.00 NA 52.63 19.05 13.04 NA 9.68 17.39 13.79 17.86 10.71 8.00 2.38 12.50 25.00 13.95 17.65 0.00 8.70 5.71 6.67 5.00 9.38 3.85 7.89 8.33 8.33 13.79 11.76 0.00 0.00 6.67 K jcn_only_AD trio,I_chr3L_999683_1009321 chr3L - chr3L_1034066_1034762 chr3L_1034066_1034753 chr3L_1033650_1034065;chr3L_1034763_1034875 0.00 0.00 NA 4.55 NA NA NA 0.00 2.56 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA NA 2.53 0.00 5.00 NA 0.00 NA NA 5.13 NA NA NA 0.00 NA 3.70 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA NA 0.00 NA 2.50 0.00 NA NA 0.00 NA NA NA K jcn_only_AD Mmp1,E_chr2R_20560380_20562585,I_chr2R_20564123_20565214,I_chr2R_20569965_20572193 chr2R - chr2R_20560840_20562585 chr2R_20560840_20562495 chr2R_20560775_20560839;chr2R_20562586_20562664 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG3358 chr2R + chr2R_2810923_2810984 chr2R_2810922_2810923;chr2R_2810984_2810985 chr2R_2810875_2810922;chr2R_2810985_2811164 23.53 NA NA NA NA NA NA NA 10.81 NA NA 35.71 NA NA 21.43 NA 15.38 NA 6.67 17.65 NA NA 42.86 40.00 45.45 NA NA NA 69.23 60.00 NA 14.29 12.50 12.50 NA NA 33.33 38.46 33.33 24.24 NA 19.05 NA 33.33 23.53 NA 23.53 NA 14.29 31.82 NA NA 20.00 NA NA NA 12.50 14.29 K alternative_donor Pect,I_chr2L_13207997_13208109 chr2L + chr2L_13204273_13208109 chr2L_13207997_13208109 chr2L_13208110_13208209;chr2L_13203768_13204272 0.96 0.96 0.97 1.25 0.99 0.69 1.69 1.20 1.16 0.55 0.90 1.07 1.15 1.26 0.94 1.50 1.29 0.89 1.43 0.94 0.89 1.05 0.94 0.96 1.07 1.17 1.42 1.55 0.73 0.67 0.88 0.57 0.35 1.31 1.09 0.86 0.57 0.93 0.64 0.56 0.53 1.02 1.54 1.27 0.46 0.75 1.16 0.49 1.35 0.82 1.17 1.18 0.58 1.06 1.23 0.77 0.76 0.36 K intron_retention lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6394546_6419543,I_chr2R_6404486_6419543,R_chr2R_6408775_6419537,I_chr2R_6409616_6419543,I_chr2R_6413368_6414281,I_chr2R_6419625_6419686,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6410475_6419543 chr2R_6410474_6410475;chr2R_6419543_6419544 chr2R_6410419_6410474;chr2R_6419544_6419624 53.51 42.86 54.84 68.42 64.00 57.14 73.53 69.23 60.00 NA 65.22 60.87 71.43 64.00 50.00 63.89 61.90 65.22 69.57 62.50 50.00 35.14 56.45 38.89 63.16 85.71 45.65 37.84 30.56 36.36 58.62 25.71 35.14 75.00 67.74 67.74 52.17 40.00 43.59 36.76 32.50 56.52 64.71 50.00 27.59 26.83 25.93 37.31 67.27 21.43 44.44 62.50 31.03 32.14 57.14 41.38 32.00 31.67 K intron_retention SMSr chr3L - chr3L_7369009_7369748 chr3L_7369008_7369009;chr3L_7369748_7369749 chr3L_7368505_7369008;chr3L_7369749_7369880 58.33 47.37 50.00 48.15 NA 43.75 58.82 68.18 58.82 NA NA 47.06 75.00 71.43 43.75 44.44 50.00 43.75 57.14 56.00 45.45 NA 68.18 66.67 80.00 42.86 72.22 60.00 58.33 61.54 71.43 NA NA 53.33 59.09 55.00 52.63 55.00 58.33 38.24 NA 53.85 60.00 58.82 NA 66.67 55.56 77.78 52.00 87.50 63.33 75.00 NA 57.89 46.15 75.00 60.00 NA K jcn_only_AD CG4858,I_chr3L_20520381_20520577,EI_chr3L_20520642_20520692 chr3L + chr3L_20520642_20520692;chr3L_20520381_20520692 chr3L_20520377_20520692 chr3L_20520693_20520792;chr3L_20520281_20520376 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.58 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 K intron_retention eIF4G,I_chr4_948813_950447 chr4 - chr4_936345_936462 chr4_936344_936345;chr4_936462_936463 chr4_936243_936344;chr4_936463_936685 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.48 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.76 0.00 1.00 0.00 0.00 0.00 0.00 0.00 1.04 0.23 0.00 0.64 0.00 0.00 0.79 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 K alternative_donor Dcp2,F_chr3L_15815909_15816023,F_chr3L_15817090_15817547 chr3L - chr3L_15817090_15819385;chr3L_15817090_15818570 chr3L_15817090_15817547 chr3L_15816990_15817089;chr3L_15819386_15819487 2.38 1.67 2.78 1.50 1.96 1.69 2.26 2.42 0.98 11.11 3.77 1.24 2.47 2.41 2.53 1.72 1.32 3.64 2.11 1.18 1.72 4.17 2.25 2.04 4.35 2.50 5.00 2.50 14.58 1.64 2.38 4.55 3.53 1.92 2.00 2.99 1.56 2.22 2.13 2.17 7.69 2.07 1.22 2.78 5.88 2.63 3.12 2.08 1.30 4.76 1.45 2.04 5.88 5.26 2.08 4.17 5.56 2.70 K alternative_acceptor Mocs1 chr3L + chr3L_11065511_11065549;chr3L_11065511_11065661 chr3L_11065511_11065569 chr3L_11064659_11065510;chr3L_11065662_11066454 66.67 59.09 68.18 74.19 90.91 72.22 71.43 56.67 62.16 57.14 53.85 72.41 46.15 69.23 61.11 70.37 90.91 76.47 60.00 62.16 40.00 63.64 69.77 66.67 74.07 61.11 57.14 62.07 52.31 75.00 66.67 64.86 78.57 75.00 68.00 54.84 76.00 66.67 68.75 68.00 61.22 67.65 80.00 74.36 58.49 58.14 71.43 61.82 56.25 72.22 62.86 72.22 73.33 73.33 63.16 79.17 61.29 60.71 K alternative_acceptor how chr3R + chr3R_17897764_17900173 chr3R_17897764_17900170 chr3R_17897461_17897763;chr3R_17900174_17900666 35.71 37.78 45.45 40.00 19.05 47.37 37.93 40.62 30.65 28.57 26.67 33.33 60.00 35.71 40.00 45.45 40.00 20.83 23.53 42.00 33.33 33.33 33.87 29.41 37.50 36.36 27.66 28.57 52.63 45.45 34.29 35.71 33.33 35.48 41.18 30.61 42.59 43.75 25.00 36.17 46.15 36.17 36.36 34.43 41.67 39.13 17.65 39.29 50.00 24.24 39.53 32.00 33.33 37.04 28.57 32.00 34.48 33.33 K alternative_acceptor armi,I_chr3L_3466623_3467559 chr3L + chr3L_3461671_3462120 chr3L_3461671_3462103 chr3L_3461541_3461670;chr3L_3462121_3462299 2.17 2.00 0.00 0.00 0.00 2.17 1.47 2.06 2.63 0.00 1.79 0.00 4.48 2.04 2.17 1.54 0.00 1.54 1.85 1.36 0.00 5.26 3.57 3.12 3.03 2.27 4.17 1.82 4.65 1.35 8.06 2.56 3.31 2.90 2.17 0.00 2.44 1.67 3.70 2.41 0.00 3.51 2.38 0.00 5.00 5.88 2.63 3.23 1.14 4.55 4.76 1.96 0.00 0.00 0.00 3.57 3.12 6.45 K intron_retention miple2,I_chr3L_274251_274594 chr3L + chr3L_274808_274866 chr3L_274807_274808;chr3L_274866_274867 chr3L_274595_274807;chr3L_274867_274969 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 K intron_retention AcCoAS,I_chr3L_21265768_21265914 chr3L - chr3L_21265978_21266050 chr3L_21265977_21265978;chr3L_21266050_21266051 chr3L_21265915_21265977;chr3L_21266051_21266789 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9674,I_chr3L_16785451_16785540,I_chr3L_16785706_16785748,I_chr3L_16793055_16800660 chr3L - chr3L_16785436_16785540 chr3L_16785435_16785436;chr3L_16785540_16785541 chr3L_16785351_16785435;chr3L_16785541_16785640 36.67 34.78 63.64 26.32 45.45 25.00 22.86 35.00 40.91 19.05 NA 36.67 42.86 52.38 40.00 52.63 45.00 0.00 40.00 43.48 NA 14.04 47.62 32.00 47.37 41.18 27.59 16.67 16.22 26.67 19.35 41.67 28.07 48.48 38.89 60.00 41.67 31.58 37.50 27.27 38.89 26.32 NA 25.00 30.77 31.82 42.86 34.38 35.71 46.67 35.29 26.67 37.50 NA 34.78 41.18 54.55 36.84 K intron_retention lqf,I_chr3L_7522287_7522807 chr3L + chr3L_7528745_7529103 chr3L_7528744_7528745;chr3L_7529103_7529104 chr3L_7528643_7528744;chr3L_7529104_7529535 60.00 NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA NA NA NA NA 42.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG4709,RI_chr2L_9954545_9954595 chr2L + chr2L_9954535_9954595 chr2L_9954545_9954595 chr2L_9954596_9954601;chr2L_9954445_9954534 7.14 NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA 15.38 NA NA NA 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Rph,I_chrX_10644396_10644958,I_chrX_10646283_10647245,I_chrX_10647710_10648325,RI_chrX_10649048_10651427 chrX - chrX_10645816_10647245 chrX_10645815_10645816;chrX_10647245_10647246 chrX_10644959_10645815;chrX_10647246_10647345 0.00 0.00 0.00 NA 0.00 0.00 NA 11.11 0.00 NA NA 12.50 6.67 NA 10.34 NA 6.67 0.00 0.00 6.25 NA 7.69 NA 0.00 NA NA NA NA NA NA 0.00 NA NA 6.25 NA 0.00 0.00 NA 9.09 0.00 NA 0.00 NA NA 0.00 NA NA 0.00 11.43 0.00 0.00 NA 6.25 NA 0.00 NA 0.00 0.00 K jcn_only_AA CG1646,RI_chr3R_24638209_24638280,I_chr3R_24641816_24641874 chr3R + chr3R_24637877_24638116;chr3R_24637877_24637958 chr3R_24637877_24637948 chr3R_24637841_24637876;chr3R_24638117_24638208 4.55 6.56 8.91 5.52 6.33 5.88 13.51 4.17 5.70 6.67 7.06 2.23 7.27 4.55 3.96 9.30 7.35 3.23 11.11 2.52 3.61 9.41 9.09 6.90 6.25 6.93 5.36 9.80 2.65 0.85 7.14 0.84 0.47 6.90 2.90 3.08 2.62 5.81 1.77 4.61 1.33 6.67 3.17 3.96 0.88 0.97 3.45 3.45 3.11 1.96 0.00 2.86 4.55 0.00 3.88 5.00 4.69 0.89 K intron_retention RI_chr2R_3817895_3817951,RI_chr2R_3819348_3819403,CG8728 chr2R - chr2R_3825214_3825266 chr2R_3825213_3825214;chr2R_3825266_3825267 chr2R_3824709_3825213;chr2R_3825267_3825407 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG12734,I_chr3L_3183812_3183932,I_chr3L_3184645_3185360 chr3L + chr3L_3183998_3184248 chr3L_3184038_3184248 chr3L_3184249_3185272;chr3L_3183933_3183997 97.02 100.00 NA 95.24 NA NA 96.00 93.10 98.00 96.55 NA 92.31 NA NA 92.00 100.00 NA NA NA 100.00 100.00 100.00 98.48 94.59 92.59 NA 100.00 95.24 96.55 100.00 100.00 93.33 96.43 100.00 85.71 96.15 95.16 97.06 97.33 85.71 100.00 100.00 NA 96.97 88.89 94.29 94.12 NA 97.06 100.00 97.92 NA NA 100.00 100.00 97.96 96.97 NA K alternative_donor CoRest,I_chrX_19416977_19417035 chrX + chrX_19416977_19417035;chrX_19416431_19417035;chrX_19416669_19417035;chrX_19416423_19417035 chrX_19416603_19417035 chrX_19417036_19417135;chrX_19416201_19416422 6.52 9.38 11.11 3.85 10.00 9.76 2.63 3.85 7.41 8.82 5.88 10.00 5.88 5.88 6.67 12.77 12.50 7.14 5.56 9.28 6.06 10.29 5.49 7.59 6.82 5.66 4.69 7.69 4.08 4.00 13.95 4.88 3.64 5.00 3.64 3.08 5.61 6.74 4.76 1.96 0.00 7.87 7.14 4.00 4.17 0.00 7.69 3.45 7.41 4.08 6.38 6.82 10.53 8.33 11.32 9.09 12.20 6.52 K intron_retention unc-13,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_924098_924986 chr4_924097_924098;chr4_924986_924987 chr4_923998_924097;chr4_924987_925545 13.33 NA NA NA NA NA NA 20.00 NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor sina chr3L + chr3L_16847053_16849396 chr3L_16847626_16849396 chr3L_16849397_16852050;chr3L_16846848_16847052 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 100.00 98.04 100.00 100.00 100.00 97.18 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 95.45 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 K alternative_acceptor CG2126,RI_chr3R_27601238_27601280,RI_chr3R_27602105_27602308 chr3R - chr3R_27601225_27601280 chr3R_27601238_27601280 chr3R_27601281_27601380;chr3R_27601138_27601224 0.00 0.00 0.00 6.45 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 4.92 NA 0.00 0.00 0.00 0.00 NA 6.67 10.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.78 4.76 0.00 NA 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 K intron_retention Arp14D,RE_chrX_16445264_16446372 chrX - chrX_16444220_16444282 chrX_16444219_16444220;chrX_16444282_16444283 chrX_16444010_16444219;chrX_16444283_16444498 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention MB8.chrX.pasa.104 chrX + chrX_14596597_14596650 chrX_14596596_14596597;chrX_14596650_14596651 chrX_14596395_14596596;chrX_14596651_14597077 0.00 0.00 0.00 0.94 0.00 0.00 0.93 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 5.66 0.00 4.17 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 3.23 K intron_retention CG6422,RI_chr3R_20863994_20864142 chr3R - chr3R_20862440_20863932 chr3R_20862439_20862440;chr3R_20863932_20863933 chr3R_20862345_20862439;chr3R_20863933_20863993 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 2.78 4.76 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Syx7,I_chr3L_21439901_21439962 chr3L + chr3L_21438969_21439032 chr3L_21438968_21438969;chr3L_21439032_21439033 chr3L_21438959_21438968;chr3L_21439033_21439123 97.22 97.83 87.76 96.34 97.37 96.97 94.87 98.75 93.85 100.00 94.44 98.68 95.56 92.16 91.84 95.70 94.55 91.67 98.15 95.24 91.30 87.10 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 94.44 73.33 94.94 96.43 100.00 98.04 96.67 97.78 97.56 NA 92.86 96.67 100.00 95.65 97.06 95.65 100.00 94.00 97.78 100.00 96.97 100.00 100.00 93.33 97.78 100.00 100.00 K intron_retention spz chr3R - chr3R_22892388_22893079 chr3R_22892387_22892388;chr3R_22893079_22893080 chr3R_22892330_22892387;chr3R_22893080_22893093 97.83 97.14 100.00 94.00 95.83 96.00 98.04 100.00 97.56 94.44 93.10 98.80 100.00 100.00 97.67 97.37 100.00 93.33 100.00 100.00 95.24 96.67 97.87 100.00 96.88 97.83 93.75 100.00 92.59 95.00 100.00 100.00 97.22 93.88 96.77 100.00 97.37 92.59 98.00 96.00 100.00 98.57 95.45 100.00 96.00 100.00 100.00 97.22 98.51 100.00 100.00 96.55 100.00 100.00 100.00 97.14 100.00 92.11 K jcn_only_AA cno,I_chr3R_999718_999986,I_chr3R_999737_999777 chr3R - chr3R_999718_999777 chr3R_999737_999777 chr3R_999778_999877;chr3R_999637_999717 1.33 0.00 1.23 2.80 2.86 1.19 1.38 2.30 1.43 0.00 1.41 2.92 1.52 2.94 0.00 0.00 3.70 1.10 1.23 1.33 0.00 0.56 1.98 0.66 0.85 0.00 2.14 2.16 2.17 0.84 0.00 0.00 2.73 1.00 2.25 1.52 1.94 2.00 0.91 0.61 0.00 1.19 1.96 2.56 0.00 2.02 2.91 0.00 2.17 0.43 1.07 0.00 1.90 0.65 2.22 1.57 1.92 0.00 K intron_retention faf,RI_chr3R_27603474_27603893,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27603474_27603893 chr3R_27603473_27603474;chr3R_27603893_27603894 chr3R_27603374_27603473;chr3R_27603894_27603993 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention MB8.chr3R.pasa.66,CG1091,I_chr3R_2910490_2910662,RI_chr3R_2910490_2910686,RI_chr3R_2911041_2911135,RI_chr3R_2946518_2946663 chr3R - chr3R_2910490_2910646 chr3R_2910489_2910490;chr3R_2910646_2910647 chr3R_2910390_2910489;chr3R_2910647_2911040 0.00 0.00 0.00 0.00 5.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 2.22 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 3.03 0.00 1.67 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Pdi,RE_chr3L_15131606_15135404,I_chr3L_15132625_15133292 chr3L - chr3L_15132625_15135399 chr3L_15132625_15133292 chr3L_15132525_15132624;chr3L_15135400_15135940 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.17 0.07 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.05 0.00 0.00 0.06 0.11 0.00 0.06 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon mura,I_chr3R_5373093_5376618,RI_chr3R_5373093_5377292,CR42549,noncoding_15610,I_chr3R_5375533_5376618,RI_chr3R_5380786_5380850 chr3R - chr3R_5373093_5377487 chr3R_5375533_5377487 chr3R_5372520_5373092 chr3R_5373826_5375532 chr3R_5377488_5377520 78.87 93.10 83.33 64.38 72.00 76.00 71.88 81.08 79.59 33.33 75.86 87.30 97.22 86.84 75.00 80.00 79.31 72.41 86.11 78.21 65.22 59.09 65.75 84.09 76.32 80.00 78.57 93.94 54.90 63.04 83.87 87.10 58.82 80.95 76.92 62.00 65.62 68.97 64.15 87.14 80.00 75.00 86.21 63.16 69.23 84.62 95.12 80.85 78.87 88.37 94.12 81.48 56.52 90.00 83.72 89.47 76.47 65.38 K intron_retention RhoGAP93B chr3R - chr3R_16914410_16921813 chr3R_16914409_16914410;chr3R_16921813_16921814 chr3R_16914018_16914409;chr3R_16921814_16921904 0.00 0.00 0.00 4.26 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.00 0.00 0.00 0.00 0.00 0.00 NA NA K intron_retention CG2225 chr2L - chr2L_21671141_21671228 chr2L_21671140_21671141;chr2L_21671228_21671229 chr2L_21670535_21671140;chr2L_21671229_21671391 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 9.09 21.74 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA N jcn_only_AA Fer1HCH,I_chr3R_26212319_26213496,I_chr3R_26213132_26213185 chr3R - chr3R_26211964_26212040 chr3R_26211979_26212040 chr3R_26212041_26212109;chr3R_26211898_26211963 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG32582,I_chrX_15730402_15730457 chrX + chrX_15730242_15730314 chrX_15730241_15730242;chrX_15730314_15730315 chrX_15730223_15730241;chrX_15730315_15730401 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.56 NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.25 NA 0.00 NA NA NA 0.00 NA NA 0.00 NA 0.00 NA 4.35 NA 0.00 0.00 NA 0.00 0.00 NA K intron_retention CG10107,CG10103 chr3L - chr3L_6738069_6738130 chr3L_6738068_6738069;chr3L_6738130_6738131 chr3L_6737524_6738068;chr3L_6738131_6739587 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 1.20 2.88 2.18 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 K jcn_only_AA CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_155591_155927,I_chr4_157794_157864 chr4 + chr4_155591_157504 chr4_155591_155927 chr4_155499_155590;chr4_157505_157604 0.00 0.00 0.00 0.00 NA 3.85 0.00 0.00 0.00 NA 8.33 2.86 NA 0.00 3.03 3.45 0.00 4.00 0.00 1.85 9.52 NA 0.00 NA NA 0.00 NA NA NA NA 1.92 NA NA 2.60 NA NA NA NA NA 2.70 NA 1.72 0.00 0.00 NA NA NA 0.00 1.14 NA NA NA NA NA 0.00 NA NA NA K alternative_acceptor bip2,RI_chr4_481674_487126,RI_chr4_483128_487126,RI_chr4_486609_487126 chr4 - chr4_485942_487126;chr4_485855_487126 chr4_486609_487126 chr4_487127_487226;chr4_485750_485854 5.00 0.00 6.25 18.18 0.00 10.00 2.44 5.56 4.35 0.00 5.56 10.53 0.00 5.00 4.35 6.45 6.25 29.41 5.00 2.94 5.88 NA 5.88 8.33 0.00 9.09 5.88 0.00 0.00 10.00 4.00 NA 0.00 5.00 0.00 0.00 0.00 0.00 7.14 5.00 NA 2.78 0.00 4.35 16.67 10.00 0.00 11.11 2.70 14.29 5.88 7.14 0.00 0.00 4.17 14.29 NA 16.67 K alternative_acceptor CG9007,RI_chr3L_14010982_14011111 chr3L + chr3L_14010982_14011111 chr3L_14010982_14011045 chr3L_14010882_14010981;chr3L_14011112_14011211 97.22 95.00 96.00 97.22 94.12 100.00 100.00 93.33 96.43 100.00 92.86 100.00 100.00 95.65 100.00 97.06 100.00 94.74 100.00 97.56 100.00 94.44 94.59 95.65 100.00 100.00 95.45 100.00 93.75 100.00 100.00 100.00 94.44 95.35 93.33 93.75 96.00 100.00 100.00 96.00 100.00 97.67 95.24 100.00 90.00 100.00 100.00 95.65 95.83 100.00 100.00 94.12 100.00 87.50 92.00 92.86 100.00 100.00 K intron_retention how chr3R + chr3R_17897764_17900170 chr3R_17897763_17897764;chr3R_17900170_17900171 chr3R_17897461_17897763;chr3R_17900171_17900666 8.70 6.25 8.70 13.64 NA 5.26 25.00 19.23 13.51 NA NA 11.76 33.33 NA 11.76 10.53 14.29 NA NA 7.69 NA 5.71 7.69 10.71 11.11 0.00 0.00 9.52 0.00 7.14 8.70 NA 3.45 10.53 3.57 7.14 8.89 3.70 14.29 6.25 NA 6.06 5.56 7.69 NA 10.53 NA 0.00 10.81 6.67 6.25 0.00 10.53 10.00 0.00 14.29 10.53 NA K alternative_donor Lip4 chr2L + chr2L_10530670_10530855 chr2L_10530676_10530855 chr2L_10530856_10531517;chr2L_10530314_10530669 29.46 28.45 30.68 27.70 30.14 24.32 32.81 30.28 27.81 25.61 40.00 33.33 33.33 28.41 30.34 30.25 35.14 27.08 92.86 32.30 33.33 28.69 25.34 28.97 29.47 42.67 24.16 25.89 35.29 29.46 33.86 27.84 35.00 26.32 29.46 28.57 29.14 29.46 25.85 20.92 36.13 30.77 29.85 34.25 28.48 35.26 25.81 30.67 34.18 29.11 33.54 30.85 25.94 25.35 28.57 26.72 27.61 28.05 K jcn_only_AD vkg,I_chr2L_5027222_5027297,I_chr2L_5027222_5028118 chr2L - chr2L_5027222_5027297;chr2L_5027222_5028118 chr2L_5027222_5027351 chr2L_5027122_5027221;chr2L_5028119_5028218 89.45 92.61 92.54 88.93 95.59 94.44 87.34 84.77 92.88 88.24 96.31 85.95 85.81 88.67 83.57 93.25 93.17 88.48 88.89 84.16 91.01 80.91 88.71 92.46 90.48 87.50 89.74 94.59 88.00 87.23 93.06 89.32 81.25 89.57 75.36 70.49 96.46 97.74 93.81 89.45 87.30 91.24 89.08 92.86 80.00 85.06 90.41 86.21 87.20 91.47 93.39 90.05 88.81 82.50 90.91 92.22 93.28 92.02 K intron_retention zf30C chr2L + chr2L_9758754_9759679 chr2L_9758753_9758754;chr2L_9759679_9759680 chr2L_9758454_9758753;chr2L_9759680_9760053 0.00 0.00 0.00 3.85 0.00 0.00 0.98 0.00 2.01 0.00 0.00 0.00 0.00 0.00 0.00 2.15 0.00 2.94 0.00 1.41 0.00 3.85 0.00 2.90 0.00 0.00 8.75 12.24 0.00 0.00 0.00 0.00 1.06 0.85 0.00 2.38 0.00 1.67 1.68 0.00 0.00 1.22 0.00 2.86 0.97 1.94 0.00 0.00 0.00 1.64 2.13 0.00 0.00 0.00 2.50 0.00 0.00 0.00 K cassette rump,I_chr3R_5338175_5338299 chr3R - chr3R_5333109_5335157 chr3R_5333109_5334012;chr3R_5334152_5335157 chr3R_5334013_5334151 chr3R_5331980_5333108;chr3R_5335158_5335257 79.21 87.63 87.36 92.59 90.70 89.02 89.17 93.42 92.89 61.54 89.39 88.96 84.00 93.88 94.25 95.24 95.45 91.09 97.17 98.04 91.18 71.53 75.16 72.59 66.67 90.80 84.11 67.82 47.32 68.85 62.04 60.00 70.17 94.61 78.43 56.10 66.67 75.44 62.93 69.16 67.72 89.89 98.81 59.48 57.69 61.36 78.64 54.02 92.19 79.21 73.81 80.00 74.03 64.89 88.70 73.60 82.72 68.51 K multi_cassette Gprk1,R_chr2R_238724_265876,RI_chr2R_354997_358274,RI_chr2R_357455_358274 chr2R - chr2R_315503_358274 chr2R_315503_345527;chr2R_345603_345654;chr2R_345761_345811;chr2R_345886_345945;chr2R_346023_358274 chr2R_345528_345602;chr2R_345655_345760;chr2R_345812_345885;chr2R_345946_346022 chr2R_315493_315502;chr2R_358275_358374 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 95.24 NA 100.00 100.00 100.00 88.89 100.00 95.83 100.00 75.00 100.00 100.00 83.33 100.00 100.00 100.00 NA 66.67 100.00 NA 60.00 100.00 83.33 100.00 66.67 93.75 100.00 100.00 NA NA NA 85.71 83.33 90.91 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 K alternative_acceptor Nup153,I_chrX_16495232_16495296 chrX + chrX_16495232_16495408 chrX_16495232_16495296 chrX_16495132_16495231;chrX_16495409_16499819 0.00 0.00 1.54 1.43 0.00 0.00 5.88 1.23 0.00 1.75 0.00 0.83 2.38 1.49 1.47 1.33 0.00 0.00 0.00 0.00 2.00 3.39 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 2.35 4.35 2.07 0.00 2.50 0.00 0.00 0.00 1.54 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Dbp80,E_chr3LHet_2513829_2513928 chr3LHet + chr3LHet_2473307_2543665 chr3LHet_2473307_2503937;chr3LHet_2504074_2543665 chr3LHet_2503938_2504073 chr3LHet_2473205_2473306;chr3LHet_2543666_2543794 100.00 100.00 100.00 100.00 90.91 94.44 100.00 100.00 97.78 NA NA 96.97 100.00 100.00 100.00 100.00 94.12 100.00 100.00 95.83 NA 100.00 88.89 90.00 100.00 100.00 100.00 NA 100.00 NA 96.55 NA NA 97.14 NA NA 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 93.75 100.00 K alternative_donor I_chr2L_19388570_19389922,CG17544 chr2L - chr2L_19393657_19398346;chr2L_19393657_19398334 chr2L_19393657_19398350 chr2L_19393497_19393656;chr2L_19398351_19398401 50.63 54.17 49.59 58.29 60.34 60.18 50.47 51.61 50.23 47.46 52.38 54.07 46.48 55.83 41.03 47.95 49.32 54.29 49.55 52.80 50.63 47.57 52.68 51.79 41.18 55.14 52.38 41.46 35.85 52.80 50.00 49.49 43.72 50.97 51.26 54.63 50.00 39.71 45.57 57.05 45.00 47.19 53.68 52.85 51.59 55.17 52.24 49.26 52.61 49.12 46.79 46.15 48.57 58.14 55.94 54.84 46.15 48.13 K cassette rut,I_chrX_14718760_14718821 chrX - chrX_14690156_14692907 chrX_14690156_14691324;chrX_14691556_14692907 chrX_14691325_14691555 chrX_14689682_14690155;chrX_14692908_14693198 0.00 7.69 NA NA 0.00 NA NA NA 0.00 0.00 NA 15.79 NA NA 0.00 NA NA NA NA 0.00 NA 10.53 0.00 0.00 NA NA NA NA 0.00 NA NA NA 0.00 0.00 NA NA 4.00 0.00 NA 6.45 NA 0.00 NA 4.17 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention Flo,I_chr2R_11456012_11456623 chr2R - chr2R_11454097_11454307 chr2R_11454096_11454097;chr2R_11454307_11454308 chr2R_11453894_11454096;chr2R_11454308_11454472 1.19 0.89 2.13 0.00 0.00 0.00 8.53 2.48 1.82 0.00 3.03 1.07 0.00 2.33 1.82 1.24 0.00 1.32 0.00 2.34 1.47 1.19 0.66 2.38 6.06 4.12 3.85 0.00 6.90 0.00 2.73 0.00 2.35 0.00 0.00 2.67 0.00 0.85 0.00 0.70 2.97 1.11 2.38 1.68 0.00 0.00 0.00 0.00 1.83 2.20 1.48 1.19 0.00 0.92 1.63 1.46 0.47 1.09 K alternative_acceptor Ard1,noncoding_11800 chr3L + chr3L_9965498_9965980;chr3L_9965498_9966021 chr3L_9965498_9965994 chr3L_9965419_9965497;chr3L_9966022_9966054 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 12.50 NA NA NA 12.50 NA NA NA 16.67 NA NA NA NA NA NA 0.00 28.57 0.00 NA NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA NA 0.00 9.09 NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 K intron_retention nod,I_chrX_11475074_11475402 chrX + chrX_11476218_11478338 chrX_11476217_11476218;chrX_11478338_11478339 chrX_11476072_11476217;chrX_11478339_11478529 26.32 16.67 14.29 26.32 10.53 33.33 21.43 21.05 28.12 36.84 20.00 31.43 NA 33.33 29.17 33.33 25.00 36.84 30.77 28.95 35.00 NA 21.43 12.50 20.00 11.11 13.64 NA 53.33 25.00 58.82 46.15 43.75 25.00 17.65 19.05 13.95 23.08 16.67 28.57 43.75 21.95 21.05 20.00 29.41 37.04 53.33 40.74 17.65 26.32 24.00 17.39 35.29 25.00 NA 31.25 46.15 53.33 K jcn_only_AA CG6838,I_chr3L_22709306_22709668 chr3L - chr3L_22710167_22710293 chr3L_22710181_22710293 chr3L_22710294_22710303;chr3L_22710071_22710166 72.57 NA NA 92.11 NA NA NA 66.67 68.57 NA NA 65.38 NA NA NA 58.33 NA NA NA 72.73 NA 72.41 NA 77.27 NA NA NA NA NA NA NA NA NA 71.43 NA NA 72.73 NA 59.38 79.41 NA 72.73 NA NA NA NA NA NA 56.52 NA NA NA NA NA 78.26 80.95 NA NA K intron_retention Nuf2 chr2L - chr2L_7064975_7065031 chr2L_7064974_7064975;chr2L_7065031_7065032 chr2L_7064429_7064974;chr2L_7065032_7065375 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 1.41 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5960163;chr3R_5959310_5960101;chr3R_5959310_5960041;chr3R_5959310_5960049;chr3R_5959310_5960182;chr3R_5959310_5960026;chr3R_5959310_5960158;chr3R_5959310_5959679 chr3R_5959310_5959789 chr3R_5958937_5959309;chr3R_5960183_5960224 0.00 0.00 0.00 1.19 0.00 0.00 0.95 0.93 0.00 0.00 0.00 3.90 0.00 0.00 0.00 2.75 0.00 0.00 3.08 0.00 6.45 0.00 0.00 6.90 3.70 2.27 3.45 4.17 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA 2.00 4.55 0.00 0.00 0.00 5.00 0.00 NA 1.92 1.08 3.85 0.00 0.00 NA NA 0.00 3.33 NA 0.00 K intron_retention Su(var)2-HP2 chr2R - chr2R_10499197_10499285 chr2R_10499196_10499197;chr2R_10499285_10499286 chr2R_10499125_10499196;chr2R_10499286_10499446 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.35 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA K intron_retention Sir2 chr2L + chr2L_13167201_13167379 chr2L_13167200_13167201;chr2L_13167379_13167380 chr2L_13165551_13167200;chr2L_13167380_13169531 7.41 8.57 6.67 21.43 9.09 0.00 10.00 6.67 4.92 8.70 9.52 4.44 12.50 3.70 7.41 5.41 8.70 7.41 0.00 7.14 0.00 9.43 5.56 8.82 12.00 0.00 13.79 24.00 7.14 0.00 7.41 11.76 4.65 5.88 6.67 13.33 7.14 5.26 6.56 6.78 16.00 3.23 10.53 6.00 13.04 16.00 8.70 6.06 3.70 12.90 10.81 9.52 8.33 12.00 0.00 15.38 17.65 6.67 K intron_retention wech,I_chr2R_3373673_3377324,I_chr2R_3376705_3376837 chr2R - chr2R_3371305_3371366 chr2R_3371304_3371305;chr2R_3371366_3371367 chr2R_3371152_3371304;chr2R_3371367_3373320 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 7.14 0.00 0.00 2.38 0.00 0.00 0.00 2.94 NA 6.25 0.00 0.00 0.00 0.00 0.00 4.17 10.00 0.00 6.90 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 7.41 0.00 NA 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 NA 0.00 NA 5.56 0.00 K intron_retention CG14184,I_chr3L_20021910_20021979 chr3L - chr3L_20021910_20021971 chr3L_20021909_20021910;chr3L_20021971_20021972 chr3L_20021810_20021909;chr3L_20021972_20022085 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 9.09 12.12 9.09 0.00 0.00 0.00 0.00 0.00 0.00 1.82 2.63 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 K jcn_only_AD foi,I_chr3L_8520658_8520733,I_chr3L_8524905_8524976 chr3L + chr3L_8518753_8523659;chr3L_8518490_8523659 chr3L_8518805_8523659 chr3L_8523660_8524249;chr3L_8518407_8518489 91.37 95.29 89.80 90.14 94.12 91.21 97.66 94.27 93.93 86.59 91.21 97.60 95.56 93.07 91.13 94.08 91.92 96.85 94.68 93.67 94.74 87.22 87.50 88.24 87.67 95.54 93.33 83.33 72.73 90.43 92.54 91.25 86.96 93.04 93.24 91.35 82.69 91.86 91.84 89.66 88.04 93.33 91.76 89.09 85.92 88.76 78.95 90.31 93.61 87.10 94.31 94.87 92.50 85.00 92.72 90.79 87.32 91.37 K alternative_donor Tango9,RI_chr3R_7800180_7800239 chr3R - chr3R_7800180_7800267 chr3R_7800180_7800239 chr3R_7800080_7800179;chr3R_7800268_7800339 0.00 5.00 0.00 0.00 0.00 0.00 0.00 2.78 2.13 NA 0.00 0.00 0.00 0.00 4.17 0.00 NA 0.00 5.56 2.86 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 6.67 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 4.35 0.00 0.00 NA K intron_retention CG7611,I_chr3L_21518817_21520283 chr3L + chr3L_21520037_21520283 chr3L_21520036_21520037;chr3L_21520283_21520284 chr3L_21519084_21520036;chr3L_21520284_21520383 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 1.74 0.00 3.45 0.00 0.00 1.52 3.28 0.00 0.00 2.13 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA bon chr3R + chr3R_16435123_16435685 chr3R_16435123_16435661 chr3R_16434948_16435122;chr3R_16435686_16436022 12.40 16.30 6.94 13.54 6.38 6.78 13.16 8.33 14.84 29.09 14.08 9.65 56.36 14.58 12.16 14.86 9.09 10.00 18.39 11.54 3.12 30.43 18.18 22.37 7.02 14.06 9.82 17.86 19.64 10.00 10.14 5.13 10.84 18.28 10.34 12.00 18.97 15.00 12.31 15.22 11.43 11.49 16.98 15.87 10.77 6.56 16.00 18.82 13.19 9.62 12.40 13.64 9.84 10.91 10.13 9.68 16.07 13.33 K jcn_only_AA CG15347,I_chrX_8353371_8353552,I_chrX_8353371_8354203,I_chrX_8353497_8353552 chrX - chrX_8353371_8354798 chrX_8353416_8354798 chrX_8354799_8354949;chrX_8353271_8353370 7.20 5.71 4.82 7.77 5.53 4.69 25.15 6.94 7.45 4.64 2.87 8.33 9.79 8.48 6.82 4.84 11.70 6.36 7.80 7.88 7.73 10.93 5.99 7.52 7.27 11.20 6.62 5.75 9.01 4.47 7.20 8.42 9.43 5.21 7.26 19.67 6.29 5.17 4.55 7.99 15.52 7.22 8.19 6.79 8.25 6.51 5.02 3.08 7.60 7.59 6.09 7.69 4.75 6.04 6.62 6.41 6.74 11.16 K jcn_only_AA CAP-D2,E_chr3R_25501928_25504637 chr3R + chr3R_25501579_25501620;chr3R_25501579_25501655 chr3R_25501579_25501909 chr3R_25501398_25501578;chr3R_25501910_25501927 0.00 0.00 0.00 1.37 0.00 0.00 2.50 1.28 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 1.28 4.00 NA 6.45 0.00 0.00 0.00 0.00 0.00 4.17 0.00 9.09 NA 2.13 1.69 0.00 0.00 4.35 0.00 0.00 5.13 4.55 0.00 2.56 NA NA 0.00 0.00 0.00 0.00 NA 5.00 NA NA NA 0.00 NA NA NA K intron_retention CG6750,I_chr2L_10732122_10732185 chr2L - chr2L_10732126_10732185 chr2L_10732125_10732126;chr2L_10732185_10732186 chr2L_10731383_10732125;chr2L_10732186_10732285 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 1.96 1.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11537,I_chr3L_3133339_3133648,RI_chr3L_3133339_3133976,I_chr3L_3133339_3134058,I_chr3L_3133339_3139807,I_chr3L_3133339_3142827,I_chr3L_3133419_3133948 chr3L - chr3L_3131205_3142827 chr3L_3131204_3131205;chr3L_3142827_3142828 chr3L_3131109_3131204;chr3L_3142828_3142927 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1399,I_chr2R_3574133_3574191 chr2R - chr2R_3568505_3568812 chr2R_3568504_3568505;chr2R_3568812_3568813 chr2R_3568430_3568504;chr2R_3568813_3568975 0.00 0.00 0.00 3.92 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention key,I_chr2R_20674247_20674291,I_chr2R_20674567_20674813,I_chr2R_20674654_20674897,RI_chr2R_20676692_20676888 chr2R - chr2R_20673619_20673761 chr2R_20673618_20673619;chr2R_20673761_20673762 chr2R_20673265_20673618;chr2R_20673762_20674066 1.43 2.24 0.00 2.44 1.98 1.92 1.94 2.37 2.65 0.00 1.02 2.15 1.45 1.57 1.43 1.58 0.00 0.00 1.24 2.27 0.00 1.95 3.55 1.45 0.00 0.82 1.54 5.13 0.00 0.81 0.66 0.00 0.86 2.06 0.00 0.00 2.19 0.00 1.71 0.00 1.13 1.49 3.12 0.67 0.00 1.88 0.00 2.04 2.14 3.18 0.59 1.71 0.00 1.53 0.00 0.00 1.16 0.24 K alternative_acceptor enc chr3L + chr3L_3839524_3839632 chr3L_3839524_3839605 chr3L_3839424_3839523;chr3L_3839633_3840770 0.00 0.00 0.00 2.38 2.70 0.00 2.56 0.00 0.00 4.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 1.82 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10343 chr2L + chr2L_18703838_18703909 chr2L_18703837_18703838;chr2L_18703909_18703910 chr2L_18703728_18703837;chr2L_18703910_18705873 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 K intron_retention RpL30,I_chr2L_19008540_19008948,REI_chr2L_19008544_19008723,I_chr2L_19008544_19008918,snoRNA:Me28S-A2113 chr2L - chr2L_19008544_19008918 chr2L_19008543_19008544;chr2L_19008918_19008919 chr2L_19008444_19008543;chr2L_19008919_19009018 96.00 100.00 100.00 97.22 100.00 100.00 96.30 96.97 98.28 94.44 95.65 96.15 95.83 100.00 95.83 100.00 100.00 95.45 100.00 98.04 88.46 95.65 95.24 89.19 100.00 91.30 97.22 92.11 80.00 96.00 94.35 95.83 97.22 97.50 96.00 96.15 90.70 90.91 94.59 87.50 96.77 96.43 100.00 89.66 97.14 97.06 90.62 96.30 93.22 91.30 91.49 95.83 92.00 94.87 96.88 92.50 95.65 98.48 K jcn_only_AA Galpha49B,I_chr2R_8501587_8501648,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500390_8501648;chr2R_8500390_8501071 chr2R_8500390_8501759 chr2R_8500380_8500389;chr2R_8501760_8501850 6.92 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 3.85 NA NA NA NA NA NA 15.00 NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Uev1A,I_chr3L_5358186_5358359,I_chr3L_5358186_5358415,CREI_chr3L_5358186_5358453,I_chr3L_5358186_5359072,RI_chr3L_5358186_5359074,I_chr3L_5360875_5360954 chr3L - chr3L_5358186_5359228 chr3L_5358186_5358453 chr3L_5358086_5358185;chr3L_5359229_5359418 0.76 0.00 0.00 0.36 0.53 0.79 0.60 0.17 0.16 0.52 0.65 1.12 0.00 0.29 0.61 0.22 0.23 0.25 1.22 0.39 0.00 2.27 1.06 0.41 0.00 1.28 0.00 2.34 2.13 2.06 1.38 2.41 1.31 1.11 1.79 4.17 0.79 0.39 0.95 0.76 2.90 0.32 0.63 0.53 1.32 3.37 2.08 4.00 1.43 2.63 3.06 1.77 0.00 2.00 0.18 0.60 0.91 0.41 K intron_retention crm,Syx4,I_chrX_2635555_2635621,I_chrX_2636831_2636971 chrX - chrX_2632523_2632700 chrX_2632522_2632523;chrX_2632700_2632701 chrX_2632515_2632522;chrX_2632701_2632782 5.26 NA NA NA NA NA NA NA 9.09 7.69 NA NA NA NA NA NA NA NA NA NA NA 18.52 7.69 0.00 NA NA 5.26 0.00 28.57 0.00 NA NA NA NA NA 0.00 0.00 NA 0.00 6.98 NA 8.70 NA 16.67 NA NA NA 8.33 0.00 0.00 0.00 0.00 NA NA NA NA NA 6.67 K intron_retention CG5021 chr3L + chr3L_8960836_8960894 chr3L_8960835_8960836;chr3L_8960894_8960895 chr3L_8960683_8960835;chr3L_8960895_8961268 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.32 100.00 100.00 K jcn_only_AD CG12206,I_chrX_3367405_3367523 chrX - chrX_3367405_3368410 chrX_3367405_3368173 chrX_3367305_3367404;chrX_3368411_3368553 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA 98.48 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA NA 100.00 100.00 NA 98.15 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 K intron_retention CG11063 chrX - chrX_13720986_13721075 chrX_13720985_13720986;chrX_13721075_13721076 chrX_13720820_13720985;chrX_13721076_13721138 1.15 0.00 0.00 4.08 1.03 3.03 1.00 0.00 0.98 0.00 1.67 2.40 0.00 1.41 2.70 2.44 0.00 0.00 0.00 2.29 0.00 3.31 1.32 1.85 1.19 1.75 4.44 7.32 0.69 0.00 0.00 0.00 1.61 1.75 0.00 0.00 0.37 1.28 0.00 2.86 0.00 2.17 0.00 3.28 0.00 1.42 1.49 0.00 1.67 1.49 0.69 1.94 2.11 1.48 1.15 0.00 0.48 0.00 K intron_retention CG13784,I_chr2L_7209439_7209522,I_chr2L_7219131_7219918 chr2L - chr2L_7209463_7209522 chr2L_7209462_7209463;chr2L_7209522_7209523 chr2L_7209373_7209462;chr2L_7209523_7209622 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 2.04 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG9205,RI_chr3L_1035462_1035545 chr3L + chr3L_1035462_1035559 chr3L_1035462_1035545 chr3L_1035393_1035461;chr3L_1035560_1035628 0.00 0.00 0.43 0.35 0.00 0.43 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.55 0.00 0.00 0.40 0.00 0.00 0.00 1.19 0.00 0.00 0.34 0.00 0.00 0.23 0.42 0.00 0.31 0.00 0.00 0.00 0.48 0.39 0.40 0.00 0.00 0.65 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.43 K intron_retention Rab35,noncoding_24897 chrX - chrX_20052303_20052928 chrX_20052302_20052303;chrX_20052928_20052929 chrX_20052003_20052302;chrX_20052929_20053057 3.03 3.03 3.51 2.86 1.23 1.80 6.98 4.79 3.65 2.38 3.66 3.53 5.88 7.53 5.36 1.63 5.26 3.49 6.80 4.02 2.97 6.72 2.67 2.23 3.17 0.81 1.94 3.33 1.02 4.65 3.57 1.85 5.48 2.91 2.65 1.71 3.47 4.20 2.25 1.95 3.33 3.81 1.98 2.88 2.19 0.66 4.72 4.46 3.20 3.60 2.31 0.00 2.38 3.03 5.17 0.00 1.67 3.01 N intron_retention Dscam,F_chr2R_3219886_3225754,I_chr2R_3219886_3226532,FI_chr2R_3219886_3227659,F_chr2R_3219886_3228449,F_chr2R_3219886_3228832,F_chr2R_3226043_3235353,F_chr2R_3227948_3235353,F_chr2R_3228738_3235353,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3219886_3235353 chr2R_3219885_3219886;chr2R_3235353_3235354 chr2R_3219786_3219885;chr2R_3235354_3235453 33.33 NA 41.67 25.00 NA NA 33.33 35.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 9.09 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 57.89 NA 20.00 NA NA NA NA NA NA NA K alternative_acceptor dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21308939_21309938 chr2L_21309092_21309938 chr2L_21309939_21309974;chr2L_21308288_21308938 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 94.12 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA NA 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA K intron_retention lbm chr2R + chr2R_2937609_2938567 chr2R_2937608_2937609;chr2R_2938567_2938568 chr2R_2937539_2937608;chr2R_2938568_2938726 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 4.65 NA 0.00 3.92 0.00 0.00 0.00 0.00 0.00 2.70 0.00 2.94 0.00 1.92 4.44 0.00 0.00 3.23 4.76 0.00 0.00 0.00 0.00 6.25 0.00 1.64 0.00 0.00 0.00 0.00 0.00 3.33 4.35 2.17 0.00 0.00 0.00 5.26 0.00 0.00 1.20 6.12 1.79 0.00 7.14 0.00 0.00 0.00 0.00 0.00 K intron_retention tai,I_chr2L_9191814_9206231 chr2L + chr2L_9241550_9241605 chr2L_9241549_9241550;chr2L_9241605_9241606 chr2L_9241376_9241549;chr2L_9241606_9242929 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.16 2.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 K multi_cassette Ect4,I_chr3L_8075556_8086158,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8098397_8101385 chr3L_8098397_8098539;chr3L_8098758_8099115;chr3L_8100030_8101385 chr3L_8098540_8098757;chr3L_8099116_8100029 chr3L_8098297_8098396;chr3L_8101386_8101485 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 97.37 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.53 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 95.45 100.00 100.00 100.00 K intron_retention Pten,I_chr2L_10256507_10256803,F_chr2L_10259663_10260253 chr2L - chr2L_10260585_10260853 chr2L_10260584_10260585;chr2L_10260853_10260854 chr2L_10260254_10260584;chr2L_10260854_10260860 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 95.65 100.00 100.00 100.00 100.00 NA 100.00 100.00 95.45 NA 88.89 100.00 88.89 100.00 NA 100.00 NA NA 88.89 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 95.65 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention CG3689,I_chr3L_9405436_9406302 chr3L + chr3L_9405083_9405254 chr3L_9405082_9405083;chr3L_9405254_9405255 chr3L_9404917_9405082;chr3L_9405255_9405315 22.48 14.29 26.67 21.05 41.67 NA 25.00 31.82 21.74 NA NA 42.31 18.75 41.67 25.00 29.41 15.38 12.50 53.33 25.00 29.41 NA 20.00 13.04 14.29 25.00 29.17 35.00 NA 9.09 23.81 28.57 11.76 30.00 13.33 12.50 28.57 25.00 36.36 11.36 0.00 33.33 43.75 22.22 13.64 16.67 25.00 13.79 35.29 11.76 33.33 13.33 16.00 10.00 22.22 22.73 14.29 15.15 K intron_retention CG31922,RI_chr2L_1170364_1170429 chr2L + chr2L_1170554_1170610 chr2L_1170553_1170554;chr2L_1170610_1170611 chr2L_1170430_1170553;chr2L_1170611_1170892 0.00 NA NA 6.67 NA NA 0.00 0.00 NA NA NA 6.67 NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA K alternative_acceptor MRP,I_chr2L_12724912_12725088,F_chr2L_12727117_12736035 chr2L + chr2L_12724912_12725711 chr2L_12724912_12725088 chr2L_12724812_12724911;chr2L_12725712_12725796 3.79 2.86 4.22 9.09 2.03 3.70 3.47 6.06 3.79 2.75 3.60 5.84 3.98 6.37 3.59 5.07 4.02 3.68 4.57 2.92 2.44 3.40 4.37 2.73 5.03 0.71 4.11 4.85 3.85 6.08 3.29 3.70 7.07 4.34 3.90 10.10 1.97 1.50 3.05 6.32 4.84 3.95 5.19 3.06 1.45 2.29 2.34 13.56 4.08 2.40 3.64 4.37 4.72 1.06 3.49 2.36 2.77 9.86 K intron_retention Xrp1,I_chr3R_14750298_14750799 chr3R + chr3R_14751519_14751626 chr3R_14751518_14751519;chr3R_14751626_14751627 chr3R_14750800_14751518;chr3R_14751627_14752523 0.76 0.78 0.61 0.82 0.20 0.44 1.05 1.36 0.90 0.98 0.29 0.55 1.05 1.47 0.63 1.18 0.00 0.35 0.91 0.39 0.31 0.75 0.87 0.86 0.66 0.43 1.29 2.37 0.97 0.84 0.30 0.81 0.53 0.45 1.67 0.78 0.92 0.45 0.69 0.76 0.60 0.58 0.92 0.76 0.34 1.10 1.05 0.45 1.05 0.67 0.95 0.92 0.67 0.39 0.59 0.97 1.22 0.62 K intron_retention CG7029 chr3R + chr3R_18614491_18615247 chr3R_18614490_18614491;chr3R_18615247_18615248 chr3R_18614301_18614490;chr3R_18615248_18617722 60.00 50.00 69.57 85.00 88.89 55.00 61.90 59.09 75.00 NA 69.23 60.71 NA 60.00 69.23 70.00 NA 75.00 75.00 68.57 90.00 55.56 51.85 50.00 66.67 80.00 71.43 NA 50.00 72.22 60.00 38.46 83.33 64.00 71.43 69.57 35.71 53.85 57.14 47.37 60.00 66.67 NA 36.36 45.00 56.25 53.33 52.00 76.47 NA 52.00 NA 44.44 NA 61.11 58.33 38.89 50.00 K intron_retention CG7546 chr3L + chr3L_7506493_7506917 chr3L_7506492_7506493;chr3L_7506917_7506918 chr3L_7505886_7506492;chr3L_7506918_7507454 1.96 0.00 1.61 3.45 0.00 0.00 2.35 1.52 0.86 0.00 0.00 6.67 1.96 2.17 0.00 1.45 0.00 2.00 0.00 1.43 0.00 6.67 3.80 2.78 2.78 0.00 2.53 0.00 5.13 0.00 6.82 0.00 7.41 0.00 2.78 5.71 2.13 0.00 3.37 3.17 0.00 5.38 3.33 0.00 0.00 3.39 2.17 5.00 2.56 0.00 2.70 3.45 0.00 0.00 3.23 2.56 1.96 0.00 K intron_retention Gprk2 chr3R + chr3R_27280223_27280296 chr3R_27280222_27280223;chr3R_27280296_27280297 chr3R_27280117_27280222;chr3R_27280297_27280486 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 7.14 3.23 0.00 20.31 0.00 0.00 6.25 0.00 4.35 0.00 12.20 0.00 3.85 0.00 4.92 0.00 0.00 0.00 2.38 3.23 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention Nipped-B,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_615240_615298 chr2R_615239_615240;chr2R_615298_615299 chr2R_615180_615239;chr2R_615299_615458 13.05 7.14 16.67 20.51 NA 16.67 12.35 12.77 22.97 NA 12.50 19.35 12.00 12.00 11.11 26.53 10.00 18.75 16.67 16.67 NA 33.33 4.17 NA 12.50 23.53 10.53 9.09 63.64 14.29 12.50 NA NA 13.51 11.76 14.29 NA NA NA 0.00 NA 13.33 0.00 0.00 NA NA NA NA 15.56 NA 0.00 13.64 NA NA NA NA NA NA K jcn_only_AD CG14642,CG34305 chr3R - chr3R_67810_67896 chr3R_67810_67879 chr3R_67700_67809;chr3R_67897_67958 88.12 95.35 95.24 NA NA NA NA 90.91 90.62 NA NA 75.86 NA NA 80.95 NA NA 85.71 NA 94.34 NA 100.00 91.53 81.48 97.30 NA 85.71 NA 92.00 93.55 87.79 97.06 93.55 87.50 100.00 NA 86.21 94.74 83.58 100.00 72.73 82.61 NA 88.24 86.67 87.50 87.50 97.06 92.11 81.97 86.27 86.96 86.36 88.00 NA 78.57 93.55 100.00 K jcn_only_AA RhoGAP68F,RI_chr3L_12133229_12134100 chr3L + chr3L_12133229_12134100;chr3L_12133229_12134239 chr3L_12133229_12134351 chr3L_12133129_12133228 97.06 96.30 100.00 100.00 100.00 100.00 90.67 96.39 97.14 100.00 98.36 94.68 96.15 96.49 100.00 100.00 100.00 95.83 100.00 98.44 98.18 76.79 98.78 88.24 88.24 95.24 93.67 100.00 95.08 97.85 97.06 94.29 98.20 93.67 94.87 81.13 99.03 94.34 97.67 97.50 96.15 96.49 97.83 98.33 93.83 96.36 93.10 95.54 96.74 100.00 95.52 96.88 96.43 100.00 98.00 100.00 97.87 98.53 K intron_retention Nedd4,I_chr3L_17535485_17536604,I_chr3L_17536186_17536604,I_chr3L_17536813_17536863 chr3L + chr3L_17536186_17536604 chr3L_17536185_17536186;chr3L_17536604_17536605 chr3L_17536086_17536185;chr3L_17536605_17536704 42.11 NA NA NA NA NA 81.82 NA NA NA NA NA NA NA NA NA NA NA NA 42.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Rbf chrX - chrX_693047_693348 chrX_693047_693123 chrX_692311_693046;chrX_693349_693680 1.41 0.00 0.00 0.00 0.00 0.00 3.92 2.00 2.53 12.50 NA 1.67 4.17 3.45 2.78 0.00 0.00 0.00 6.45 3.51 NA 11.48 2.33 1.61 2.63 0.00 0.00 NA 0.00 4.17 0.00 2.94 0.00 5.13 0.00 0.00 0.00 0.00 1.33 3.51 NA 3.08 0.00 0.00 0.00 2.86 6.25 NA 0.00 1.49 4.29 0.00 7.69 0.00 0.00 4.55 0.00 6.25 K cassette sdt,C_chrX_8118081_8119117,I_chrX_8131684_8131842 chrX + chrX_8098337_8104435 chrX_8098337_8102829;chrX_8104072_8104435 chrX_8102830_8104071 chrX_8098206_8098336;chrX_8104436_8104713 20.93 20.93 21.43 52.78 22.73 17.24 31.25 20.00 25.86 15.00 23.81 20.41 29.41 21.05 30.43 11.54 20.00 25.00 18.52 47.44 30.77 11.90 15.00 17.39 16.67 11.54 15.15 20.00 14.81 11.76 20.00 25.00 26.32 27.78 12.50 21.21 21.33 14.58 18.75 16.67 25.00 24.44 23.53 18.75 57.14 20.83 29.63 20.00 28.21 22.22 14.29 13.79 29.41 25.93 12.50 12.50 28.57 30.00 K intron_retention PR2,I_chr2R_9032197_9036175,CG33007 chr2R - chr2R_9032194_9036175 chr2R_9032193_9032194;chr2R_9036175_9036176 chr2R_9032097_9032193;chr2R_9036176_9036275 0.00 0.00 0.00 13.16 0.00 2.56 8.33 3.92 0.00 0.00 0.00 1.28 0.00 0.00 0.00 5.00 0.00 0.00 3.03 2.90 0.00 0.00 0.00 0.00 0.00 2.33 5.71 5.00 0.00 6.06 5.88 0.00 2.44 6.90 0.00 0.00 0.00 0.00 0.00 2.70 0.00 2.60 0.00 2.56 0.00 0.00 0.00 4.62 3.41 6.45 4.08 0.00 2.27 3.23 7.32 4.17 0.00 3.28 K intron_retention CG3558,RI_chr2L_2995071_2997790 chr2L + chr2L_2997060_2997491 chr2L_2997059_2997060;chr2L_2997491_2997492 chr2L_2996502_2997059;chr2L_2997492_2997530 9.60 12.12 7.41 9.68 0.00 13.33 20.00 16.67 14.58 6.90 NA 22.22 0.00 11.11 23.53 36.84 0.00 9.52 20.00 10.64 NA 3.28 10.81 5.00 6.25 NA 8.89 2.13 NA 5.13 10.53 0.00 6.90 13.79 15.79 10.53 3.23 6.25 8.00 20.00 0.00 20.00 16.67 5.71 6.67 12.50 4.55 0.00 9.68 3.03 8.33 11.11 NA 9.09 11.76 5.41 15.00 15.00 K cassette CG10103,noncoding_10997 chr3L - chr3L_6747908_6748519;chr3L_6747594_6748519 chr3L_6747594_6748172,chr3L_6747908_6748172;chr3L_6748224_6748519 chr3L_6748173_6748223 chr3L_6747493_6747593;chr3L_6748520_6749258 34.29 34.48 39.00 24.67 29.27 30.21 22.88 30.23 33.11 66.00 40.00 50.00 24.62 23.53 35.90 39.02 42.42 44.44 35.96 33.33 38.82 40.82 38.54 38.75 38.57 27.17 31.82 50.00 13.16 34.29 27.52 36.00 39.20 35.94 29.67 20.34 33.94 37.88 34.78 31.63 30.86 32.95 27.85 45.00 31.44 33.03 42.55 34.33 29.75 38.85 33.33 44.68 28.00 34.04 37.27 30.43 34.38 28.12 K jcn_only_AD CG3774,I_chrX_6114220_6114292 chrX + chrX_6114220_6115412 chrX_6114451_6115412 chrX_6115413_6116709;chrX_6114120_6114219 96.55 86.36 88.57 97.78 100.00 NA 92.11 97.62 95.74 NA 95.00 100.00 NA 100.00 96.00 95.00 NA NA 91.67 93.48 95.83 100.00 96.97 95.83 NA 91.67 NA 95.45 NA NA 91.67 NA NA 94.44 100.00 100.00 NA 95.00 100.00 100.00 NA 97.92 100.00 100.00 90.00 93.75 95.45 NA 98.00 NA 100.00 100.00 100.00 100.00 100.00 96.55 NA 80.00 K jcn_only_AD lig,CI_chr2R_3962006_3962916,I_chr2R_3962357_3962977,RI_chr2R_3962875_3962977 chr2R + chr2R_3961577_3962977;chr2R_3961910_3962977 chr2R_3962006_3962977 chr2R_3962978_3963016;chr2R_3961479_3961576 97.83 96.71 98.72 96.74 96.10 97.65 98.49 98.74 96.75 96.08 98.09 95.91 97.27 97.13 97.44 99.21 99.28 98.99 99.05 99.57 96.77 96.77 97.41 96.80 97.29 98.73 94.67 79.89 91.79 96.74 99.00 96.77 99.22 98.05 98.88 95.92 97.95 97.53 98.41 96.89 97.20 98.57 99.03 98.59 97.22 98.58 99.17 97.66 98.57 99.48 98.20 98.95 97.52 98.80 97.87 97.77 97.83 98.73 K intron_retention CG30085,I_chr2R_11756325_11756380 chr2R - chr2R_11753782_11753842 chr2R_11753781_11753782;chr2R_11753842_11753843 chr2R_11753495_11753781;chr2R_11753843_11756324 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 4.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.47 12.50 16.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 2.13 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.52 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention rin,I_chr3R_9476825_9476895 chr3R + chr3R_9473269_9474639 chr3R_9473268_9473269;chr3R_9474639_9474640 chr3R_9473144_9473268;chr3R_9474640_9476216 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 1.27 0.56 1.85 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.61 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr2L_4834257_4835246,CG15626,I_chr2L_4837780_4837844 chr2L - chr2L_4837158_4837234 chr2L_4837157_4837158;chr2L_4837234_4837235 chr2L_4836483_4837157;chr2L_4837235_4837533 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12922514_12923162;chr2R_12922514_12923159 chr2R_12922514_12922850 chr2R_12922340_12922513;chr2R_12923163_12923912 100.00 100.00 96.55 100.00 100.00 80.65 95.92 100.00 100.00 96.43 NA 98.31 100.00 96.67 100.00 100.00 97.56 100.00 96.30 96.00 NA 98.88 100.00 96.00 100.00 100.00 95.12 100.00 100.00 100.00 100.00 NA 98.63 98.48 100.00 97.56 97.67 100.00 100.00 95.92 100.00 98.65 100.00 100.00 95.24 100.00 95.00 98.84 100.00 100.00 96.67 95.45 100.00 NA 100.00 NA 100.00 95.12 K alternative_donor nudE chr3L + chr3L_9892456_9892825;chr3L_9892375_9892825 chr3L_9892498_9892825 chr3L_9892826_9893184;chr3L_9892344_9892374 0.00 0.00 0.00 0.00 NA NA 6.25 0.00 0.00 NA NA 8.33 11.11 0.00 NA 4.00 0.00 0.00 11.11 10.53 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 5.88 NA NA NA NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 5.88 NA 0.00 NA NA NA 0.00 NA NA NA K intron_retention CG34437,noncoding_19678 chr3R + chr3R_24109769_24109829 chr3R_24109768_24109769;chr3R_24109829_24109830 chr3R_24109723_24109768;chr3R_24109830_24110971 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 NA 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA K intron_retention l(1)G0269,I_chrX_21192541_21192931 chrX - chrX_21193190_21194157 chrX_21193189_21193190;chrX_21194157_21194158 chrX_21193182_21193189;chrX_21194158_21194468 3.34 5.26 0.00 6.94 0.00 0.00 3.45 3.30 3.42 0.00 5.41 10.23 3.39 0.00 0.00 6.58 5.00 0.00 0.00 3.88 1.89 20.00 3.92 8.00 0.00 7.50 4.44 21.05 0.00 6.67 3.51 0.00 12.50 2.02 0.00 0.00 0.00 6.25 5.71 4.88 6.25 4.13 5.77 0.00 6.45 0.00 0.00 2.63 1.75 0.00 6.25 0.00 0.00 NA 2.82 8.33 0.00 0.00 K intron_retention S chr2L - chr2L_1052496_1052565 chr2L_1052495_1052496;chr2L_1052565_1052566 chr2L_1052331_1052495;chr2L_1052566_1053053 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG8726 chr2R - chr2R_3859035_3859141 chr2R_3859070_3859141 chr2R_3859142_3859511;chr2R_3858749_3859034 5.00 3.45 2.94 6.67 6.90 3.23 6.90 0.00 4.92 4.35 4.17 1.54 0.00 0.00 8.82 6.67 3.70 0.00 10.00 1.82 3.45 21.74 5.19 5.56 10.00 0.00 2.56 2.08 7.69 8.16 6.67 0.00 9.80 6.98 3.23 6.25 6.94 4.65 4.00 5.63 19.05 4.29 6.67 10.42 14.29 3.45 6.67 9.09 5.17 4.35 6.82 3.33 4.76 8.70 2.70 3.33 5.00 7.69 K intron_retention brp chr2R + chr2R_5423074_5423345 chr2R_5423073_5423074;chr2R_5423345_5423346 chr2R_5421307_5423073;chr2R_5423346_5423597 0.00 NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA NA NA NA NA NA NA 1.69 14.29 0.00 NA NA NA 0.00 7.41 7.14 NA 0.00 0.00 NA NA 0.00 0.00 6.67 5.56 0.00 NA NA NA 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA NA 0.00 0.00 K jcn_only_AA CG17665 chr2R - chr2R_125229_125523 chr2R_125253_125523 chr2R_125524_125714;chr2R_125223_125228 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 3.28 NA NA 0.00 3.85 0.00 3.70 0.00 NA 0.00 4.35 0.00 0.00 NA 0.00 3.33 0.00 NA NA NA 0.00 0.00 0.00 2.63 2.78 0.00 0.00 0.00 1.82 2.25 NA 0.00 NA NA NA 0.00 0.00 0.00 2.63 K intron_retention MRP,F_chr2L_12727117_12736035 chr2L + chr2L_12737619_12737958 chr2L_12737618_12737619;chr2L_12737958_12737959 chr2L_12737550_12737618;chr2L_12737959_12738176 28.76 26.67 26.83 56.25 26.09 16.67 21.82 31.37 31.67 NA 36.36 38.46 55.00 29.03 33.33 21.43 19.05 14.29 41.67 35.21 39.13 80.00 31.94 23.08 40.91 28.57 29.82 30.77 27.78 32.14 22.22 17.65 26.47 30.77 29.41 52.38 22.22 19.23 27.91 31.58 28.00 22.00 26.67 21.54 24.00 25.93 30.00 33.33 34.00 18.75 30.51 42.86 25.93 30.00 28.95 22.73 16.33 21.05 K alternative_donor Gli chr2L - chr2L_15760575_15762688 chr2L_15760575_15762568 chr2L_15760402_15760574;chr2L_15762689_15762723 55.05 NA NA NA NA NA NA NA 50.00 47.06 NA 58.33 NA NA NA 60.00 NA NA NA 57.14 NA 56.25 50.00 54.55 57.14 NA NA 77.78 56.52 55.56 85.71 NA 39.13 36.36 44.44 70.00 NA NA NA 56.25 35.29 52.63 NA 50.00 66.67 58.82 NA 50.00 45.45 NA 54.55 40.00 NA NA NA NA NA 60.00 K intron_retention CG10469,CG10467 chr3L - chr3L_6086922_6086981 chr3L_6086921_6086922;chr3L_6086981_6086982 chr3L_6086304_6086921;chr3L_6086982_6087514 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 98.57 100.00 100.00 100.00 100.00 97.50 100.00 98.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 97.06 100.00 100.00 98.04 97.73 100.00 100.00 K alternative_donor CG5381,I_chr2L_10319077_10319133,RI_chr2L_10320054_10321505 chr2L - chr2L_10319077_10319133 chr2L_10319077_10319130 chr2L_10319011_10319076;chr2L_10319134_10319195 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 95.24 NA 100.00 100.00 NA 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 NA NA NA NA NA 90.00 90.00 NA 95.24 100.00 90.00 87.50 NA NA NA 93.33 88.89 100.00 NA 100.00 100.00 NA NA 91.67 100.00 NA NA NA NA NA 100.00 85.71 100.00 95.45 K intron_retention bbc,REI_chr2R_9379401_9381986 chr2R - chr2R_9378377_9378939 chr2R_9378376_9378377;chr2R_9378939_9378940 chr2R_9378245_9378376;chr2R_9378940_9379098 21.54 18.23 28.24 36.73 20.61 20.63 28.86 29.87 20.39 9.88 28.47 21.54 35.90 24.32 27.95 42.42 33.06 34.34 38.03 28.15 31.75 30.00 23.59 17.13 25.00 26.72 19.53 19.89 22.34 19.88 20.62 13.08 29.91 29.80 25.42 33.88 15.21 18.40 17.15 14.74 11.56 22.69 25.77 9.67 8.67 12.69 10.75 21.82 24.22 11.43 17.74 20.86 11.56 9.93 28.14 13.14 9.50 12.18 K jcn_only_AA gw,I_chr4_678308_678527,I_chr4_679135_681671 chr4 - chr4_678308_678527 chr4_678311_678527 chr4_678528_678627;chr4_678208_678307 100.00 98.76 99.54 99.39 100.00 100.00 99.35 100.00 99.80 100.00 100.00 100.00 100.00 99.54 100.00 100.00 99.50 99.35 100.00 99.63 100.00 99.76 99.69 100.00 100.00 100.00 99.62 100.00 100.00 99.80 99.54 99.34 99.60 100.00 99.58 99.78 99.44 100.00 100.00 99.79 99.46 99.74 100.00 99.69 99.57 100.00 99.24 99.84 99.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.64 K jcn_only_AA CG8331,I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10060189_10060261 chr2R_10060189_10060251 chr2R_10060120_10060188;chr2R_10060262_10060327 100.00 99.73 100.00 100.00 100.00 100.00 99.63 100.00 100.00 100.00 100.00 99.87 100.00 100.00 100.00 99.57 100.00 100.00 100.00 100.00 100.00 99.65 100.00 100.00 99.64 99.79 100.00 99.36 100.00 100.00 99.82 100.00 100.00 99.84 100.00 100.00 99.59 99.67 100.00 100.00 100.00 99.86 99.70 100.00 100.00 100.00 100.00 99.26 99.88 99.54 99.77 100.00 100.00 99.40 100.00 99.80 99.76 99.53 K cassette Ten-m,EI_chr3L_22298865_22299141,I_chr3L_22374182_22399991 chr3L - chr3L_22297630_22300646 chr3L_22297630_22298066;chr3L_22298865_22300646 chr3L_22298067_22298864 chr3L_22297346_22297629;chr3L_22300647_22300652 72.08 63.16 68.75 65.22 71.43 57.89 75.00 74.29 70.37 50.00 73.33 81.08 92.31 72.73 62.96 82.14 78.95 69.23 80.00 75.00 68.75 42.86 74.07 70.59 84.62 63.16 64.00 40.00 75.00 48.39 78.95 66.67 54.84 75.00 73.33 73.08 68.75 53.33 65.22 62.50 66.67 76.92 84.62 60.87 100.00 80.00 80.00 66.67 73.81 100.00 73.33 77.78 66.67 NA 60.00 66.67 80.00 83.33 K intron_retention CG8176,I_chr3R_5348614_5348964 chr3R + chr3R_5348614_5349923 chr3R_5348613_5348614;chr3R_5349923_5349924 chr3R_5348514_5348613;chr3R_5349924_5350029 2.48 1.37 2.70 2.48 0.00 3.39 1.54 2.05 1.84 0.00 2.99 2.58 2.25 2.50 2.11 3.48 2.86 0.00 3.81 4.43 2.41 8.51 2.22 1.92 6.12 0.00 2.74 5.88 0.00 2.78 1.09 0.00 2.56 1.82 0.00 5.06 1.64 2.08 4.55 8.26 0.00 1.95 1.28 2.90 0.00 4.08 2.27 5.00 2.48 0.00 3.12 4.08 3.51 0.00 2.80 0.00 2.94 2.70 K intron_retention Vha26 chr3R + chr3R_1418908_1418968 chr3R_1418907_1418908;chr3R_1418968_1418969 chr3R_1418581_1418907;chr3R_1418969_1420455 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.29 0.65 1.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 K intron_retention CG9947,eIF-2alpha chrX - chrX_16333320_16333629 chrX_16333319_16333320;chrX_16333629_16333630 chrX_16333264_16333319;chrX_16333630_16333795 0.70 0.38 1.46 0.37 0.28 0.71 0.88 0.58 0.85 0.00 0.00 1.05 1.14 1.07 1.08 1.37 0.40 0.39 1.21 0.78 0.46 0.64 0.57 1.25 0.62 0.64 0.86 1.24 0.49 0.72 0.70 0.88 1.30 0.81 0.32 0.68 0.20 0.66 0.89 0.98 0.32 0.95 0.80 0.42 0.29 0.78 0.32 0.75 1.15 0.67 1.35 0.00 0.43 0.37 0.79 0.58 0.38 0.74 K intron_retention grp,REI_chr2L_16696770_16697500,I_chr2L_16697644_16698961,R_chr2L_16698072_16698138 chr2L + chr2L_16696763_16697500 chr2L_16696762_16696763;chr2L_16697500_16697501 chr2L_16696670_16696762;chr2L_16697501_16697600 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.86 0.00 0.00 1.40 4.44 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.94 0.00 1.56 0.00 1.89 0.00 0.00 0.00 3.12 0.00 0.00 0.00 2.22 0.75 0.00 2.65 1.68 0.00 1.83 0.00 0.00 0.00 1.94 2.67 0.00 0.86 1.35 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention blow,RI_chr2R_3470434_3470776 chr2R - chr2R_3472863_3474487 chr2R_3472862_3472863;chr2R_3474487_3474488 chr2R_3472561_3472862;chr2R_3474488_3474581 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 77.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor gw,RI_chr4_679135_679703,I_chr4_679135_680299,RI_chr4_679135_680693,I_chr4_679135_681047,I_chr4_679135_681671 chr4 - chr4_679135_680594;chr4_679135_680546;chr4_679135_680270;chr4_679135_680503 chr4_679135_680185 chr4_679035_679134;chr4_680595_680603 54.66 66.67 40.00 66.67 0.00 66.67 70.59 52.17 71.43 NA 40.00 35.71 42.86 44.44 40.00 57.89 66.67 0.00 42.86 36.36 66.67 100.00 80.00 75.00 0.00 0.00 66.67 50.00 NA 40.00 57.14 NA 50.00 33.33 66.67 66.67 100.00 50.00 NA 71.43 NA 46.15 66.67 66.67 NA 33.33 NA 0.00 68.75 NA 66.67 100.00 NA NA 50.00 NA NA NA K alternative_donor gro chr3R + chr3R_21868657_21868716;chr3R_21868622_21868716 chr3R_21868626_21868716 chr3R_21868717_21869101;chr3R_21868588_21868621 47.49 50.00 57.14 38.46 50.00 33.33 52.94 30.00 40.00 42.86 NA 50.00 50.00 42.86 66.67 50.00 55.56 56.25 55.56 47.62 55.56 61.54 52.63 42.86 44.44 40.00 44.44 41.18 25.00 38.89 46.67 NA 54.55 36.00 57.14 43.75 47.06 41.67 47.37 52.17 NA 42.86 37.50 44.44 NA 62.50 62.50 28.57 47.62 45.45 50.00 22.22 NA 50.00 46.15 54.55 55.56 55.56 K cassette CG5741,I_chr3L_8928033_8928095 chr3L - chr3L_8927241_8927504 chr3L_8927241_8927330;chr3L_8927412_8927504 chr3L_8927331_8927411 chr3L_8926666_8927240;chr3L_8927505_8927696 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Rad51C,F_chr2R_5053491_5053575 chr2R + chr2R_5053491_5053549 chr2R_5053490_5053491;chr2R_5053549_5053550 chr2R_5053391_5053490;chr2R_5053550_5054064 38.12 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 70.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention coro,I_chr2R_2752880_2760038,I_chr2R_2753390_2754191,I_chr2R_2754447_2754986,I_chr2R_2754447_2755071 chr2R - chr2R_2752880_2754191 chr2R_2752879_2752880;chr2R_2754191_2754192 chr2R_2752780_2752879;chr2R_2754192_2754291 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 2.94 0.85 0.00 0.00 0.00 0.00 2.94 0.81 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 2.02 K alternative_donor CG31431 chr3R + chr3R_17696656_17697703;chr3R_17696730_17697703;chr3R_17696581_17697703 chr3R_17696702_17697703 chr3R_17697704_17697862;chr3R_17696406_17696580 1.59 1.28 0.91 0.62 0.00 1.16 1.80 0.46 1.35 3.03 3.41 0.56 2.04 2.94 3.25 0.65 1.23 0.86 0.85 0.40 1.20 1.89 1.20 0.00 1.96 1.96 4.49 2.17 3.64 1.85 1.92 3.23 1.27 2.50 1.89 2.27 1.79 0.00 0.00 3.06 2.47 1.83 2.33 1.15 1.54 4.17 1.59 1.52 0.99 3.77 0.98 0.00 2.56 2.50 0.78 0.00 1.54 3.00 K intron_retention CG30423 chr2R - chr2R_20762531_20762596 chr2R_20762530_20762531;chr2R_20762596_20762597 chr2R_20762510_20762530;chr2R_20762597_20762795 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.29 98.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG5027 chr3L + chr3L_16222441_16222504 chr3L_16222440_16222441;chr3L_16222504_16222505 chr3L_16222218_16222440;chr3L_16222505_16222743 0.00 NA NA 14.29 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention Myo61F chr3L + chr3L_1318770_1325994 chr3L_1318769_1318770;chr3L_1325994_1325995 chr3L_1318505_1318769;chr3L_1325995_1326139 2.82 0.00 1.69 2.82 0.00 3.92 4.88 3.54 2.88 4.76 0.00 2.11 6.82 3.92 2.78 4.35 4.11 4.08 1.39 4.82 2.56 2.70 0.00 0.00 0.00 0.00 5.17 0.00 24.00 0.00 0.00 0.00 0.00 6.25 5.13 5.56 0.00 0.00 5.77 3.39 0.00 3.54 2.13 0.00 5.56 5.26 0.00 9.76 4.41 6.67 1.67 2.13 0.00 4.76 0.00 5.26 4.44 6.06 K intron_retention AP-47,I_chr3R_5385123_5385196 chr3R - chr3R_5384091_5384149 chr3R_5384090_5384091;chr3R_5384149_5384150 chr3R_5383434_5384090;chr3R_5384150_5384804 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 1.28 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Crc,Scm chr3R - chr3R_5455338_5455459 chr3R_5455338_5455429 chr3R_5454930_5455337;chr3R_5455460_5455902 100.00 100.00 100.00 99.92 100.00 100.00 100.00 100.00 100.00 99.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.90 99.87 100.00 100.00 99.89 99.90 100.00 100.00 99.92 100.00 100.00 100.00 99.89 100.00 100.00 100.00 99.93 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.92 100.00 100.00 100.00 99.95 99.95 K intron_retention F_chr2R_18548367_18550224,R_chr2R_18548408_18548573,CG42566,I_chr2R_18551419_18551493 chr2R + chr2R_18550369_18550438 chr2R_18550368_18550369;chr2R_18550438_18550439 chr2R_18550225_18550368;chr2R_18550439_18550673 35.71 NA NA NA NA NA NA 47.06 38.46 NA NA 33.33 NA NA NA NA NA NA NA 48.28 NA NA NA NA NA NA NA NA NA NA 29.41 NA NA NA NA NA 33.33 NA NA 53.33 NA 50.00 NA NA NA 25.00 NA NA 47.06 28.57 NA NA NA 25.00 NA NA 35.71 NA K intron_retention Gel,RI_chr3R_62662_62721,RI_chr3R_62666_63346,I_chr3R_62933_63346,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_62662_63346 chr3R_62661_62662;chr3R_63346_63347 chr3R_62626_62661;chr3R_63347_63446 25.00 NA 14.29 35.71 NA NA 30.77 NA 25.00 NA NA 13.04 NA NA NA 21.43 NA NA NA 4.55 NA 30.00 NA NA NA NA 30.77 NA NA NA NA NA NA 25.00 NA NA NA NA NA 30.77 NA 19.05 NA NA NA NA NA NA 13.64 NA NA NA NA NA NA NA NA NA K jcn_only_AD Rab1,I_chr3R_17093463_17094644,I_chr3R_17094214_17094492,I_chr3R_17099005_17099062 chr3R - chr3R_17093463_17094644 chr3R_17093463_17094492 chr3R_17093363_17093462;chr3R_17094645_17094744 100.00 100.00 100.00 100.00 100.00 99.69 100.00 99.86 99.89 99.17 100.00 99.81 100.00 100.00 99.76 100.00 99.58 100.00 99.81 99.61 100.00 98.96 100.00 99.58 100.00 100.00 100.00 98.31 100.00 99.44 99.77 100.00 100.00 99.86 100.00 100.00 100.00 100.00 99.48 99.49 100.00 99.86 99.70 99.31 100.00 100.00 100.00 98.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.65 99.60 K intron_retention Nurf-38 chr2R - chr2R_20447088_20447145 chr2R_20447087_20447088;chr2R_20447145_20447146 chr2R_20446978_20447087;chr2R_20447146_20447297 0.00 0.79 0.00 0.00 0.00 0.00 0.00 1.32 0.41 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.99 0.00 0.00 0.00 0.00 2.44 5.30 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.85 0.60 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.31 0.00 1.22 0.00 0.66 0.00 K intron_retention CG11876,CG11877 chr3R + chr3R_24939878_24940150 chr3R_24939877_24939878;chr3R_24940150_24940151 chr3R_24939716_24939877;chr3R_24940151_24940729 0.00 0.00 0.00 1.98 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 1.94 0.00 2.14 0.00 2.44 0.62 1.26 0.00 0.00 2.04 4.12 2.90 1.28 3.51 0.00 0.75 1.04 0.00 0.00 1.16 0.00 0.00 1.68 2.08 1.25 0.00 0.00 0.00 1.57 1.28 3.57 3.25 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3L_18664773_18665233,GNBP2,I_chr3L_18667579_18667644 chr3L - chr3L_18668376_18668437 chr3L_18668375_18668376;chr3L_18668437_18668438 chr3L_18668319_18668375;chr3L_18668438_18668454 89.74 92.31 94.44 82.50 75.00 93.75 86.79 91.67 89.74 NA 69.23 87.88 94.12 100.00 92.86 96.43 87.50 92.31 88.46 72.97 77.78 80.00 92.86 85.71 100.00 94.12 100.00 NA NA 87.50 88.46 NA NA 82.35 90.00 NA 63.64 NA NA 76.47 NA 76.92 92.31 100.00 88.89 93.33 75.00 90.00 85.42 88.89 92.86 90.91 NA 77.78 89.47 91.67 90.00 91.67 K intron_retention Papss chr3L + chr3L_19838529_19838596 chr3L_19838528_19838529;chr3L_19838596_19838597 chr3L_19838397_19838528;chr3L_19838597_19838730 77.35 72.73 NA 89.47 NA NA 75.00 90.00 72.22 NA NA 71.43 NA NA 100.00 66.67 NA NA NA 75.00 NA NA 91.67 63.64 87.50 80.00 100.00 NA NA NA 77.78 NA NA 61.54 NA 100.00 NA NA 87.50 NA NA 81.25 NA NA NA 60.00 NA NA 76.92 NA 63.64 NA NA NA 81.82 NA NA 69.23 K alternative_acceptor Upf2,I_chrX_7969268_7969358,I_chrX_7969312_7969358 chrX - chrX_7969268_7969358;chrX_7969293_7969358;chrX_7969303_7969358 chrX_7969312_7969358 chrX_7969359_7969458;chrX_7969212_7969267 36.93 37.50 33.33 42.86 20.00 44.44 40.00 50.00 26.67 33.33 NA 33.33 33.33 37.50 63.64 38.46 50.00 42.86 62.50 41.67 33.33 23.08 38.46 33.33 42.86 36.36 NA 41.67 28.57 22.22 18.18 NA 42.86 33.33 40.00 50.00 25.00 40.00 37.50 30.77 NA 30.00 20.00 33.33 33.33 NA NA 33.33 25.00 37.50 22.22 NA 20.00 NA 38.46 NA 40.00 50.00 K alternative_acceptor Pcf11,RI_chr2R_10753287_10754988 chr2R - chr2R_10753272_10754988;chr2R_10753287_10754988;chr2R_10753557_10754988;chr2R_10753239_10754988 chr2R_10753581_10754988 chr2R_10754989_10755088;chr2R_10753187_10753238 0.00 0.00 0.00 4.17 0.00 0.00 9.09 4.55 5.71 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 6.45 2.78 0.00 10.00 0.00 0.00 0.00 5.00 6.67 0.00 0.00 9.52 3.33 0.00 12.50 2.44 4.17 4.00 5.88 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 12.50 0.00 0.00 0.00 NA 0.00 K intron_retention RI_chr2R_2760771_2763486,noncoding_4737 chr2R + chr2R_2763703_2763777 chr2R_2763702_2763703;chr2R_2763777_2763778 chr2R_2763667_2763702;chr2R_2763778_2763876 78.95 53.85 69.23 85.00 NA 60.00 84.00 75.86 83.72 NA 60.00 90.48 92.31 83.33 87.50 84.00 75.00 88.89 88.89 90.00 88.89 71.43 78.95 92.86 72.73 NA 71.43 60.00 45.45 80.00 44.83 85.71 76.92 74.07 80.00 63.64 72.73 NA 63.64 74.07 84.62 72.00 92.31 88.24 94.44 78.95 85.00 46.15 71.88 88.46 77.78 66.67 93.33 86.67 75.00 71.43 100.00 85.71 K intron_retention Ptpmeg,I_chr3L_353688_353782,I_chr3L_355125_355175 chr3L + chr3L_348218_351366 chr3L_348217_348218;chr3L_351366_351367 chr3L_348123_348217;chr3L_351367_351663 87.50 NA NA NA NA NA NA NA 70.00 NA NA NA NA NA NA NA NA NA NA NA NA 63.16 NA NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA 90.91 NA NA NA NA NA NA NA NA NA K intron_retention CG8078,RI_chr2R_4985642_4985695 chr2R - chr2R_4985642_4985693 chr2R_4985641_4985642;chr2R_4985693_4985694 chr2R_4985542_4985641;chr2R_4985694_4985851 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 7.14 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 3.03 NA 0.00 0.00 7.14 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor wge chr3R - chr3R_18542354_18542655;chr3R_18542390_18542655 chr3R_18542387_18542655 chr3R_18542656_18542685;chr3R_18540256_18542353 25.41 19.35 25.00 35.00 21.43 NA 53.33 21.43 19.51 16.67 NA 41.94 NA 30.77 18.75 33.33 NA NA 40.00 25.81 27.27 35.71 16.28 20.00 27.27 50.00 28.00 30.00 42.86 34.38 21.43 20.83 22.78 17.39 17.86 58.62 26.00 16.13 15.91 26.23 36.00 18.92 27.27 28.12 23.53 23.53 6.67 33.33 16.67 36.36 32.14 60.00 13.04 16.67 17.65 46.67 12.00 16.22 K cassette scny,I_chr3L_5763034_5768288 chr3L + chr3L_5767177_5768288 chr3L_5767177_5767513;chr3L_5768114_5768288 chr3L_5767514_5768113 chr3L_5767039_5767176;chr3L_5768289_5768388 7.25 6.48 5.62 5.48 8.00 6.45 5.21 4.21 8.57 4.44 7.41 6.76 5.36 7.04 7.95 17.39 4.62 2.78 6.25 6.51 7.35 11.43 7.25 7.64 5.00 9.62 7.30 13.27 9.09 7.14 8.57 11.27 16.22 7.14 6.54 4.60 6.03 5.56 6.74 12.20 10.94 8.33 6.15 11.11 10.17 11.48 5.30 10.00 7.45 7.34 7.80 6.17 6.14 4.90 9.68 8.33 4.35 14.43 K jcn_only_AD I_chr2R_4783150_4783708,Ggamma1,noncoding_5300 chr2R + chr2R_4788937_4789641 chr2R_4789028_4789641 chr2R_4789642_4789782;chr2R_4788908_4788936 96.15 NA NA NA NA NA NA NA 95.00 95.00 NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.83 100.00 NA NA 96.15 96.55 91.30 NA 100.00 NA NA NA NA NA NA NA NA NA 96.00 K intron_retention CG12304 chr3L + chr3L_15576982_15577386 chr3L_15576981_15576982;chr3L_15577386_15577387 chr3L_15576765_15576981;chr3L_15577387_15577539 1.53 0.00 2.00 3.03 3.23 0.00 2.78 0.00 1.01 0.00 4.00 1.27 0.00 2.78 5.41 0.00 0.00 0.00 0.00 1.80 4.00 0.00 2.61 0.76 2.27 5.41 2.94 10.00 3.33 2.50 9.09 0.00 0.00 3.17 0.00 0.00 2.92 0.81 1.53 1.61 4.76 2.15 6.25 0.00 2.78 0.00 0.00 3.92 0.00 0.00 2.73 0.00 0.00 0.00 2.08 2.80 0.00 0.00 K jcn_only_AA CG5288 chr3L - chr3L_8978332_8979076 chr3L_8978768_8979076 chr3L_8979077_8979103 4.55 NA NA NA NA NA NA NA 13.04 NA NA 4.55 NA NA 4.17 NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.70 NA NA NA NA NA 4.55 15.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor RpS7,E_chr3R_26032339_26034298,I_chr3R_26034115_26034211,I_chr3R_26034118_26034211 chr3R - chr3R_26034118_26034211 chr3R_26034148_26034211 chr3R_26034212_26034311;chr3R_26034018_26034117 99.98 99.98 99.98 99.99 99.97 99.98 99.98 99.94 99.99 100.00 100.00 99.98 100.00 99.97 99.98 100.00 99.97 99.93 100.00 99.99 99.97 99.98 100.00 100.00 99.94 99.95 100.00 99.97 99.95 99.98 100.00 99.95 99.97 100.00 100.00 99.98 100.00 100.00 99.99 99.98 99.97 99.95 99.97 99.95 99.98 99.94 99.99 99.97 100.00 100.00 99.97 100.00 99.99 99.99 99.98 99.98 99.98 99.98 K intron_retention CG7920,I_chr3R_25837330_25837394 chr3R - chr3R_25836840_25836924 chr3R_25836839_25836840;chr3R_25836924_25836925 chr3R_25836132_25836839;chr3R_25836925_25837329 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.69 0.00 0.00 0.00 0.48 0.60 0.00 0.41 0.00 0.56 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 K alternative_donor CG17292,RI_chr2L_8372630_8372686 chr2L + chr2L_8372626_8372686 chr2L_8372630_8372686 chr2L_8372687_8372753;chr2L_8372530_8372625 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 2.63 0.00 0.00 3.70 1.37 0.00 3.33 0.00 0.00 NA 0.00 2.78 5.56 0.00 0.00 5.88 NA 5.56 0.00 0.00 NA 3.12 0.00 3.33 0.00 0.00 2.08 0.00 0.00 0.00 3.23 2.22 0.00 0.00 0.00 2.50 0.00 4.00 4.35 3.23 0.00 0.00 0.00 K intron_retention Roughened,I_chr3L_1861677_1861777,I_chr3L_1861677_1861929,I_chr3L_1861677_1862177 chr3L - chr3L_1861677_1862060 chr3L_1861676_1861677;chr3L_1862060_1862061 chr3L_1861577_1861676;chr3L_1862061_1862304 8.11 6.93 7.58 15.80 7.73 8.93 9.84 8.91 6.58 7.22 7.46 6.60 6.61 9.02 8.36 12.82 8.90 8.27 8.91 5.42 5.73 15.27 9.27 7.59 10.57 11.61 15.18 15.38 8.52 3.67 10.07 5.48 2.67 7.79 9.58 6.10 7.26 9.50 5.29 9.30 9.55 7.10 5.46 11.30 5.00 6.95 9.63 5.82 8.32 8.02 10.94 8.11 7.91 8.96 7.72 7.14 8.23 3.79 K intron_retention CG9776,CG9772 chr3R - chr3R_161452_161507 chr3R_161451_161452;chr3R_161507_161508 chr3R_161143_161451;chr3R_161508_161635 0.00 0.00 0.00 10.48 0.00 0.00 1.82 0.70 1.90 0.00 0.00 1.48 1.12 2.78 2.74 2.26 1.22 0.00 0.00 1.85 0.00 10.91 2.40 0.00 0.00 6.67 8.70 12.77 0.00 3.12 0.00 0.00 0.00 1.31 0.00 12.77 0.00 0.00 0.00 1.08 10.00 2.13 0.00 0.00 0.00 0.00 2.27 0.00 1.29 4.03 0.00 1.09 0.00 0.00 1.16 0.00 0.00 0.00 K intron_retention CG12065,CE_chrX_8469528_8477573 chrX + chrX_8478609_8478875 chrX_8478608_8478609;chrX_8478875_8478876 chrX_8478489_8478608;chrX_8478876_8478956 63.40 NA NA NA NA NA NA NA 63.64 NA NA 76.92 NA NA NA NA NA NA NA 38.89 NA 63.16 NA NA NA NA 54.55 NA 50.00 NA NA NA NA NA NA NA NA NA NA 90.00 NA 88.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention LIMK1,I_chrX_12488942_12489000 chrX - chrX_12484518_12486079 chrX_12484517_12484518;chrX_12486079_12486080 chrX_12483874_12484517;chrX_12486080_12486162 93.33 90.00 100.00 93.75 100.00 83.33 90.91 95.24 83.33 100.00 90.91 95.45 91.67 87.50 91.67 95.65 100.00 90.91 90.91 88.00 84.62 70.45 100.00 100.00 NA 100.00 93.33 100.00 94.44 100.00 93.33 NA 92.00 95.45 100.00 93.75 90.91 94.44 91.67 96.15 NA 78.12 NA 95.24 NA 91.67 87.50 86.21 90.91 90.91 94.12 100.00 87.50 NA 93.75 87.50 100.00 100.00 K intron_retention Cp1,Aats-phe chr2R + chr2R_9853291_9854259 chr2R_9853290_9853291;chr2R_9854259_9854260 chr2R_9853110_9853290;chr2R_9854260_9854474 51.31 57.89 53.33 81.25 NA 66.67 48.78 62.50 56.25 NA 75.00 60.78 68.00 57.14 55.56 57.89 53.33 16.36 48.28 35.38 25.00 43.24 43.75 48.28 52.63 26.67 61.11 60.00 50.00 46.15 17.39 NA 70.00 53.12 66.67 54.55 42.11 53.33 42.11 44.74 50.00 52.78 50.00 38.46 NA 45.45 41.67 NA 58.70 41.18 54.84 52.63 33.33 47.83 57.89 33.33 26.00 44.44 K intron_retention noncoding_20813 chr4 + chr4_925384_927519 chr4_925383_925384;chr4_927519_927520 chr4_925367_925383;chr4_927520_927563 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 92.86 100.00 100.00 K intron_retention betaTub56D,I_chr2R_15336252_15336648,I_chr2R_15336252_15337409,I_chr2R_15336252_15338966 chr2R - chr2R_15336150_15338966 chr2R_15336149_15336150;chr2R_15338966_15338967 chr2R_15334824_15336149;chr2R_15338967_15339039 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.94 100.00 100.00 99.93 100.00 100.00 100.00 100.00 100.00 99.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG10602 chr2L - chr2L_18857404_18857587;chr2L_18857404_18857511 chr2L_18857404_18857541 chr2L_18857177_18857403;chr2L_18857588_18857700 9.09 3.57 12.00 10.53 0.00 9.09 13.16 6.82 5.88 NA 8.70 6.82 30.77 3.23 18.52 4.65 6.67 9.09 3.12 7.69 7.69 9.09 7.14 3.85 9.52 9.09 7.14 0.00 20.83 9.09 10.71 14.29 26.32 11.63 23.53 17.65 3.23 0.00 3.70 12.82 10.53 10.00 10.53 7.69 11.11 9.52 11.11 14.29 5.56 4.76 9.09 6.06 5.26 NA 11.11 9.52 7.14 17.65 K alternative_donor Ras85D,I_chr3R_5338160_5338509,EI_chr3R_5338175_5338279,I_chr3R_5338175_5338299 chr3R - chr3R_5338175_5338299;chr3R_5338175_5338509 chr3R_5338175_5338279 chr3R_5338075_5338174;chr3R_5338510_5338609 1.67 2.34 2.25 1.31 0.00 1.25 1.94 2.55 2.05 0.00 1.12 1.42 1.67 1.57 2.01 3.32 2.05 1.85 1.79 1.39 0.00 1.87 2.14 2.11 1.35 1.95 2.13 3.09 1.42 1.13 2.46 1.44 0.96 1.17 1.74 0.75 1.23 0.92 0.66 2.03 1.01 2.43 2.80 2.44 0.85 0.88 2.01 1.62 1.28 1.03 2.73 0.00 1.67 3.19 2.38 2.91 1.41 0.83 K cassette Stat92E,att-ORFB chr3R - chr3R_16363186_16364942 chr3R_16363186_16364266;chr3R_16364438_16364942 chr3R_16364267_16364437 chr3R_16362916_16363185;chr3R_16364943_16365057 6.71 5.66 11.79 1.40 7.96 6.94 3.60 4.37 6.07 1.45 23.77 10.14 2.15 6.94 5.03 6.52 5.44 6.31 4.33 10.88 19.46 17.00 7.69 6.80 5.88 6.10 4.69 3.23 7.84 6.78 8.47 6.90 7.92 6.62 6.72 13.54 8.44 7.75 6.13 6.42 6.33 6.71 6.25 5.26 6.59 6.92 9.73 9.42 7.14 6.99 5.58 7.34 9.80 5.31 6.41 6.56 6.57 11.11 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2389073;chrX_2389272_2392054;chrX_2392149_2392515;chrX_2392665_2395659 chrX_2389074_2389271;chrX_2392055_2392148;chrX_2392516_2392664 chrX_2387149_2387248;chrX_2395660_2395759 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K intron_retention CG7267,CG15366,RI_chrX_8967339_8972369,I_chrX_8971691_8972369 chrX - chrX_8966023_8972369 chrX_8966022_8966023;chrX_8972369_8972370 chrX_8965905_8966022;chrX_8972370_8972469 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 K cassette CG11247,I_chr3L_21718596_21718659 chr3L - chr3L_21719051_21721386 chr3L_21719051_21719262;chr3L_21720038_21721386 chr3L_21719263_21720037 chr3L_21718941_21719050;chr3L_21721387_21721473 100.00 97.44 98.08 97.44 97.62 100.00 100.00 98.41 100.00 100.00 97.22 98.70 94.29 100.00 100.00 100.00 100.00 97.50 100.00 98.84 97.37 100.00 100.00 100.00 100.00 100.00 97.92 100.00 98.33 100.00 98.11 100.00 97.83 100.00 100.00 97.96 98.21 100.00 100.00 95.29 98.00 98.80 97.14 97.92 100.00 100.00 100.00 98.88 100.00 97.50 98.00 100.00 100.00 100.00 98.11 100.00 100.00 98.94 K intron_retention I_chr3L_207277_208117,thoc7,pyx chr3L - chr3L_212380_212444 chr3L_212379_212380;chr3L_212444_212445 chr3L_211669_212379;chr3L_212445_212556 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 3.39 0.00 0.00 0.00 2.46 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA sec23,I_chr3R_1474873_1475080,I_chr3R_1474899_1475080,I_chr3R_1474960_1475051,I_chr3R_1477727_1478102 chr3R + chr3R_1474899_1475093 chr3R_1474899_1475080 chr3R_1474877_1474898;chr3R_1475094_1475151 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD cact,RI_chr2L_16314859_16315116,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16325055_16325587;chr2L_16325055_16325493 chr2L_16325055_16325577 chr2L_16324333_16325054;chr2L_16325588_16325598 0.00 0.94 0.00 1.75 3.85 0.81 0.00 0.72 0.00 0.00 0.00 1.55 0.00 0.96 0.00 0.00 0.00 1.92 0.00 0.53 0.00 1.54 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 1.56 0.00 0.00 0.00 0.00 1.85 0.00 0.00 1.79 0.48 0.00 0.00 1.33 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG10543 chr2R + chr2R_16891767_16891831 chr2R_16891767_16891828 chr2R_16891658_16891766;chr2R_16891832_16894148 10.94 8.33 11.76 13.85 14.29 10.87 16.67 12.31 13.68 10.87 15.56 7.23 17.65 18.18 10.00 1.82 10.00 21.95 3.33 13.95 15.15 8.87 18.68 8.16 9.43 8.51 12.73 13.21 13.73 14.29 6.06 9.09 6.41 10.23 9.62 7.58 10.31 5.45 12.93 17.31 5.00 12.00 8.57 7.84 5.08 12.24 10.94 10.71 9.28 11.94 20.25 12.82 16.92 5.71 7.55 18.75 18.46 12.77 K intron_retention TFAM,RI_chr3R_16404530_16404635 chr3R - chr3R_16401344_16401867 chr3R_16401343_16401344;chr3R_16401867_16401868 chr3R_16400831_16401343;chr3R_16401868_16402446 0.00 0.00 0.00 12.77 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 2.86 0.00 0.00 0.00 5.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 2.63 0.00 0.00 1.41 3.85 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 K intron_retention Fbxl4 chrX - chrX_14129804_14129865 chrX_14129803_14129804;chrX_14129865_14129866 chrX_14129694_14129803;chrX_14129866_14130474 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor Pink1,F_chrX_6578108_6578160,F_chrX_6578108_6578165,F_chrX_6578108_6578251,I_chrX_6578115_6578251 chrX + chrX_6578104_6578251;chrX_6578104_6578165 chrX_6578104_6578160 chrX_6578015_6578103;chrX_6578252_6578260 80.00 100.00 NA 70.00 NA 100.00 87.50 71.43 91.67 NA 60.00 80.00 85.71 50.00 100.00 70.00 NA 75.00 NA 70.00 40.00 57.14 80.00 100.00 100.00 NA 80.00 NA 50.00 NA NA NA 66.67 88.89 60.00 100.00 NA NA 83.33 91.67 80.00 73.33 50.00 NA 80.00 85.71 NA 75.00 69.23 NA 66.67 NA NA NA 83.33 80.00 NA 80.00 N multi_cassette Slip1,RI_chr4_684967_689045,I_chr4_685717_686576,RI_chr4_685717_689045,RI_chr4_687548_689045 chr4 + chr4_684967_689045 chr4_684967_685613;chr4_685932_686085;chr4_686263_686576;chr4_687548_689045 chr4_685614_685931;chr4_686086_686262;chr4_686577_687547 chr4_684914_684966;chr4_689046_689145 100.00 66.67 100.00 71.43 100.00 66.67 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 88.89 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 75.00 100.00 85.71 85.71 100.00 100.00 100.00 NA 100.00 100.00 80.00 83.33 100.00 66.67 66.67 83.33 100.00 100.00 85.71 50.00 100.00 66.67 100.00 100.00 100.00 100.00 66.67 100.00 K intron_retention Roughened,I_chr3L_1861677_1861777,I_chr3L_1861677_1861929,I_chr3L_1861677_1862177 chr3L - chr3L_1861677_1862177 chr3L_1861676_1861677;chr3L_1862177_1862178 chr3L_1861577_1861676;chr3L_1862178_1862277 98.85 97.10 98.80 99.22 100.00 98.63 99.04 98.48 98.68 100.00 98.78 98.75 98.44 98.81 100.00 100.00 100.00 99.01 98.81 99.05 100.00 98.28 100.00 100.00 100.00 100.00 98.51 100.00 98.11 100.00 98.85 100.00 100.00 97.62 97.92 97.92 99.22 100.00 98.77 95.92 100.00 97.86 98.53 98.41 98.36 98.25 100.00 100.00 97.98 100.00 98.70 98.78 98.00 97.14 99.03 100.00 100.00 100.00 K intron_retention CG3621,noncoding_21543,I_chrX_2066779_2066838 chrX + chrX_2066739_2066838 chrX_2066738_2066739;chrX_2066838_2066839 chrX_2066679_2066738;chrX_2066839_2066938 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3061 chr3R + chr3R_9859822_9859883 chr3R_9859821_9859822;chr3R_9859883_9859884 chr3R_9859709_9859821;chr3R_9859884_9860047 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.69 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 K intron_retention G-ialpha65A,I_chr3L_6967574_6972726 chr3L - chr3L_6966879_6966937 chr3L_6966878_6966879;chr3L_6966937_6966938 chr3L_6966690_6966878;chr3L_6966938_6967032 0.25 0.00 0.25 0.00 0.00 0.00 0.29 0.00 0.67 0.26 0.00 0.47 0.00 0.58 0.53 0.60 0.00 0.00 0.25 0.12 0.25 0.66 0.30 0.00 0.52 0.57 1.66 3.77 0.45 0.26 0.00 0.00 0.66 0.49 0.33 1.24 0.00 0.20 0.00 0.75 0.43 0.38 0.00 0.18 0.00 0.61 0.88 0.00 0.56 0.38 0.32 0.46 0.00 0.00 0.00 0.00 0.16 0.00 K jcn_only_AD CG6498,EI_chr3L_15559245_15561305,chr3L_15559614_15559828.0,I_chr3L_15561224_15561305 chr3L + chr3L_15559254_15561305 chr3L_15559289_15561305 chr3L_15561306_15561405;chr3L_15559179_15559253 3.70 4.35 4.55 0.00 4.76 NA 3.70 0.00 1.89 NA 0.00 2.00 4.55 NA NA 2.94 4.17 NA NA 3.85 4.76 4.62 3.64 13.21 NA NA 3.23 0.00 NA 0.00 4.55 NA 11.11 6.45 NA 2.86 5.41 0.00 9.68 0.00 NA 0.00 NA NA NA NA NA 13.04 3.03 NA 4.92 NA NA NA 0.00 NA NA NA K alternative_acceptor CG4901,RI_chr2L_10212268_10212326,RI_chr2L_10212403_10212451 chr2L + chr2L_10212403_10212467 chr2L_10212403_10212451 chr2L_10212327_10212402;chr2L_10212468_10212551 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 5.26 0.00 2.56 0.00 0.00 0.00 0.00 5.88 0.00 0.00 2.56 0.00 1.16 0.00 0.00 3.45 1.89 3.12 1.82 0.00 0.00 3.33 0.00 0.00 0.00 2.27 3.45 0.00 0.00 0.00 2.44 NA 0.00 0.00 0.00 0.00 0.00 0.79 N alternative_acceptor CG42394,noncoding_15936,E_chr3R_6675742_6676058 chr3R + chr3R_6677211_6677270;chr3R_6677211_6677262 chr3R_6677211_6677344 chr3R_6677007_6677210;chr3R_6677345_6677430 0.00 0.00 0.00 6.96 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention nes chr3L - chr3L_19253331_19253636 chr3L_19253330_19253331;chr3L_19253636_19253637 chr3L_19253215_19253330;chr3L_19253637_19253779 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 93.33 NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA NA 100.00 NA 100.00 100.00 NA 90.91 NA NA NA NA 92.31 NA 100.00 NA NA NA 92.31 NA 100.00 NA NA NA NA NA 100.00 91.67 NA NA NA NA NA 100.00 NA NA NA K jcn_only_AA CG13384 chr2L + chr2L_8384541_8386216 chr2L_8384541_8384699 chr2L_8384486_8384540 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 K intron_retention nrv1 chr2L - chr2L_6779652_6779711 chr2L_6779651_6779652;chr2L_6779711_6779712 chr2L_6779585_6779651;chr2L_6779712_6779804 0.18 0.00 0.00 0.69 0.00 0.00 0.00 0.26 0.41 0.00 0.00 0.53 0.00 0.00 0.00 0.54 0.00 1.06 0.00 0.18 0.00 0.59 0.79 0.93 0.00 0.00 1.47 0.55 3.61 0.00 0.00 0.65 1.13 0.52 0.48 0.44 0.00 0.00 0.73 0.47 1.45 0.83 0.00 0.00 0.55 0.47 0.00 0.38 0.00 1.03 0.00 0.00 0.53 0.00 0.00 0.44 0.00 0.64 K intron_retention tho2 chr2L - chr2L_2138159_2139629 chr2L_2138158_2138159;chr2L_2139629_2139630 chr2L_2137984_2138158;chr2L_2139630_2139673 19.05 18.37 16.67 16.39 12.50 6.45 30.00 16.67 18.18 42.86 11.76 13.58 29.63 18.18 15.22 52.00 27.78 6.38 17.50 15.58 28.21 10.53 26.53 22.22 19.05 16.67 19.23 24.00 37.04 16.22 23.40 14.29 26.92 21.88 19.35 33.33 23.40 9.68 20.00 18.60 20.00 17.02 20.69 21.05 13.95 13.79 7.41 19.51 22.73 25.00 17.39 23.08 23.53 9.52 22.45 15.79 25.00 17.31 K intron_retention spn-D chr3R + chr3R_22991825_22991881 chr3R_22991824_22991825;chr3R_22991881_22991882 chr3R_22991815_22991824;chr3R_22991882_22991944 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention Mec2,I_chrX_19082929_19083066,I_chrX_19083581_19083676 chrX + chrX_19083839_19083917 chrX_19083838_19083839;chrX_19083917_19083918 chrX_19083673_19083838;chrX_19083918_19084237 0.65 0.00 0.43 1.52 0.32 0.45 2.15 1.14 0.54 0.90 0.96 0.28 0.40 0.59 0.82 0.93 0.59 0.28 0.51 0.63 0.65 0.46 1.11 0.39 0.61 0.84 2.02 1.62 4.38 0.57 1.47 0.78 0.70 0.18 0.89 1.31 0.67 0.76 0.53 0.46 2.18 1.05 0.59 0.45 0.73 0.77 0.83 1.14 0.65 0.39 0.93 0.00 0.43 0.74 0.40 0.33 0.29 0.84 N jcn_only_AA CG31710 chr2L - chr2L_9703179_9703267 chr2L_9703182_9703267 chr2L_9703268_9703605;chr2L_9702964_9703178 0.00 NA 0.00 35.42 NA NA 0.00 30.95 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA 45.83 0.00 NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 25.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 31.11 0.00 NA NA 0.00 NA 37.93 0.00 39.02 31.11 K intron_retention itp chr2R + chr2R_20433214_20442876 chr2R_20433213_20433214;chr2R_20442876_20442877 chr2R_20433150_20433213;chr2R_20442877_20443094 25.00 23.08 35.29 43.75 25.00 33.33 21.05 37.50 28.57 NA 16.67 30.77 30.77 NA 38.46 33.33 21.05 23.08 17.24 40.00 NA NA 11.11 NA NA NA 23.53 NA NA NA 26.67 NA NA 30.00 NA NA 17.65 NA NA NA NA 20.00 NA NA NA NA 6.25 NA 14.71 NA 7.69 NA NA NA 43.75 NA NA NA K intron_retention Pk61C,CE_chr3L_129889_141769,I_chr3L_136336_137121,I_chr3L_136336_141563 chr3L + chr3L_136336_141769 chr3L_136335_136336;chr3L_141769_141770 chr3L_136236_136335;chr3L_141770_141837 5.00 6.56 7.26 3.60 3.60 4.95 7.14 5.62 6.10 3.81 8.57 6.67 8.00 6.38 7.20 8.09 5.41 7.53 11.11 6.16 8.82 5.06 3.29 4.88 6.06 9.09 4.17 5.61 1.75 2.87 5.06 1.85 4.25 7.14 7.92 3.62 3.91 3.54 2.44 4.69 3.10 5.86 6.94 2.45 1.65 2.19 5.00 1.72 6.10 2.63 4.03 4.82 2.27 6.56 7.87 2.74 1.75 2.35 K jcn_only_AD CG4901,RI_chr2L_10212268_10212326,RI_chr2L_10212403_10212451 chr2L + chr2L_10212264_10212326 chr2L_10212268_10212326 chr2L_10212327_10212402;chr2L_10212168_10212263 0.00 3.92 0.00 0.00 0.00 0.00 0.00 1.15 0.85 NA 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 1.25 0.00 0.00 0.00 1.16 2.70 0.00 0.00 4.88 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.93 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 1.23 0.00 1.59 2.04 1.92 0.00 0.00 1.75 0.00 0.00 K intron_retention I_chr3R_1183570_1183645,CG16708 chr3R - chr3R_1187483_1193642 chr3R_1187482_1187483;chr3R_1193642_1193643 chr3R_1185701_1187482;chr3R_1193643_1194012 11.67 7.02 12.50 11.67 11.11 12.50 11.11 19.32 12.69 12.90 12.12 26.74 19.67 18.18 17.19 15.25 24.44 16.33 17.54 11.65 15.79 8.05 9.46 6.56 11.90 13.04 6.45 16.36 22.22 12.24 12.77 10.00 4.26 11.70 9.52 11.32 6.58 3.92 10.00 10.71 8.33 9.82 20.00 3.70 10.00 14.58 8.51 16.00 13.68 7.27 6.45 15.38 8.51 6.25 18.31 8.89 9.09 6.38 K intron_retention I_chr3R_8822346_8822403,CG7518 chr3R + chr3R_8828630_8828691 chr3R_8828629_8828630;chr3R_8828691_8828692 chr3R_8828493_8828629;chr3R_8828692_8831118 0.00 0.00 2.50 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 1.59 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 2.70 1.27 0.00 4.88 0.00 0.00 0.00 0.00 0.89 0.83 1.33 0.00 0.00 0.00 0.00 1.19 1.23 1.22 0.00 0.00 2.35 0.98 0.00 2.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.88 1.03 K intron_retention CG34133,F_chr3R_25696884_25696960 chr3R + chr3R_25698987_25699045 chr3R_25698986_25698987;chr3R_25699045_25699046 chr3R_25698427_25698986;chr3R_25699046_25699864 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Aats-asp chr2R + chr2R_8768376_8768454 chr2R_8768375_8768376;chr2R_8768454_8768455 chr2R_8768275_8768375;chr2R_8768455_8768780 0.00 0.00 0.00 0.35 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.55 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG3566 chrX - chrX_6169204_6170260 chrX_6169204_6170086 chrX_6169003_6169203;chrX_6170261_6170329 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG6006 chr3R + chr3R_11984096_11984579;chr3R_11983962_11984579;chr3R_11984029_11984579;chr3R_11984018_11984579 chr3R_11984036_11984579 chr3R_11984580_11984637;chr3R_11983945_11983961 22.23 NA NA NA NA NA 13.64 NA 19.23 NA NA NA NA NA NA NA NA NA NA NA NA NA 55.00 NA NA NA 54.17 NA NA NA NA NA NA 22.73 NA NA NA NA NA NA NA 27.50 NA NA NA NA NA NA 12.90 NA 21.74 NA NA NA NA NA NA NA K intron_retention cwo,noncoding_15870,chr3R_6215619_6216520.0,chr3R_6216827_6217291.0,chr3R_6217556_6219555.0,chr3R_6219984_6221958.0 chr3R + chr3R_6215160_6222418 chr3R_6215159_6215160;chr3R_6222418_6222419 chr3R_6214846_6215159;chr3R_6222419_6222542 17.50 0.00 7.14 16.67 NA NA 25.00 14.29 20.00 12.50 NA 16.67 13.33 NA NA 16.67 NA NA 14.29 10.00 NA 21.28 19.05 26.67 35.71 23.08 29.63 35.29 20.69 19.35 28.57 14.29 17.50 20.00 24.00 13.64 13.79 19.05 20.00 24.32 22.73 14.29 NA 11.76 6.67 14.29 33.33 16.28 21.43 13.79 24.24 19.05 NA NA 12.50 NA 14.29 14.29 K jcn_only_AA cni,RI_chr2L_16309575_16309999,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16310624_16310690;chr2L_16310641_16310690 chr2L_16310637_16310690 chr2L_16310691_16310700;chr2L_16310441_16310623 7.37 15.00 5.88 6.41 6.25 7.89 4.76 7.37 6.10 NA 0.00 12.50 8.57 5.56 14.81 4.11 3.03 21.62 3.23 8.82 7.69 NA 9.52 10.81 11.54 11.36 0.00 NA NA NA 14.63 NA NA 7.06 NA NA 10.71 NA 8.33 NA NA 4.29 6.52 NA NA 9.52 5.00 NA 8.00 25.81 3.23 4.35 NA NA 6.78 11.76 6.06 NA K intron_retention POSH,RI_chr2R_13458667_13458738,Rab4,I_chr2R_13461027_13461136 chr2R + chr2R_13458919_13458977 chr2R_13458918_13458919;chr2R_13458977_13458978 chr2R_13458739_13458918;chr2R_13458978_13459271 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.71 1.33 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG30122,I_chr2R_14523798_14523844,I_chr2R_14526123_14526189 chr2R - chr2R_14523777_14523844 chr2R_14523798_14523844 chr2R_14523845_14523944;chr2R_14523698_14523776 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG2249,RI_chr2R_5937150_5937205,I_chr2R_5937410_5937470 chr2R + chr2R_5937405_5937464 chr2R_5937410_5937464 chr2R_5937465_5937533;chr2R_5937341_5937404 65.75 66.67 72.22 77.33 65.12 67.74 64.91 65.75 60.61 68.63 67.57 69.84 58.54 59.68 74.24 72.55 62.50 68.52 70.59 67.46 74.36 65.00 64.95 59.74 65.12 75.56 63.20 65.57 62.96 67.06 69.53 68.89 57.32 73.17 64.93 66.15 64.89 64.25 62.77 61.29 61.40 76.77 63.64 60.90 65.75 66.53 67.03 63.41 69.84 64.71 65.80 59.81 65.11 66.47 74.70 63.37 65.84 71.05 N jcn_only_AA Vps13,I_chr2R_3464510_3464571 chr2R + chr2R_3454389_3456383 chr2R_3454389_3454650 chr2R_3454371_3454388 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 73.81 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA 72.41 100.00 51.92 NA 53.66 100.00 NA NA 100.00 NA NA 81.54 NA 100.00 NA 72.92 NA NA NA 70.67 100.00 NA NA NA NA NA 100.00 NA NA NA K jcn_only_AA Sdc,I_chr2R_17286819_17367595,I_chr2R_17324594_17367595 chr2R - chr2R_17367884_17368518;chr2R_17367862_17368518 chr2R_17368045_17368518 chr2R_17368519_17368632;chr2R_17367596_17367861 0.00 NA NA 4.44 NA 0.00 0.00 5.66 6.45 NA NA 3.23 0.00 0.00 NA 0.00 NA NA 0.00 5.71 NA NA NA NA NA 6.90 NA NA 4.55 NA 2.13 NA NA 0.00 NA NA NA NA NA NA 0.00 2.44 9.52 NA NA 0.00 NA 0.00 2.78 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention CG9992 chrX - chrX_16277201_16277356 chrX_16277200_16277201;chrX_16277356_16277357 chrX_16276939_16277200;chrX_16277357_16277544 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 6.67 4.88 0.00 1.64 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 2.27 3.92 0.00 0.00 0.00 0.00 3.12 2.56 0.00 0.00 K alternative_donor CG8929 chr2R + chr2R_16215069_16215371 chr2R_16215075_16215371 chr2R_16215372_16215639;chr2R_16214949_16215068 100.00 NA NA NA NA NA 88.89 90.00 92.31 NA NA 90.91 NA NA 100.00 100.00 NA NA 100.00 87.50 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 90.91 NA 100.00 NA NA NA NA 90.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention Exp6,I_chrX_369347_369797 chrX - chrX_370326_370426 chrX_370325_370326;chrX_370426_370427 chrX_369802_370325;chrX_370427_370615 8.52 NA NA 23.53 NA NA 21.05 0.00 8.33 NA NA 19.23 NA 0.00 5.56 5.00 NA NA 0.00 4.76 NA 6.25 4.35 0.00 NA NA 25.00 33.33 NA NA 12.00 NA NA 0.00 NA 20.00 NA 7.14 10.53 10.53 NA 13.79 NA NA NA NA NA 33.33 8.70 NA 14.29 NA NA NA 8.33 NA NA NA K jcn_only_AA Pdp1,RI_chr3L_7809841_7810536,I_chr3L_7813130_7818683,I_chr3L_7831960_7846282 chr3L - chr3L_7809712_7810536;chr3L_7809841_7810536 chr3L_7809826_7810536 chr3L_7810537_7810636;chr3L_7809584_7809711 87.96 88.46 93.65 83.67 86.54 83.87 86.36 86.76 90.79 90.54 74.07 83.33 93.94 86.96 91.07 84.21 94.83 82.26 94.64 88.37 87.50 89.90 88.46 87.88 91.55 84.00 81.42 92.71 88.06 88.16 92.73 83.33 73.33 86.90 79.69 91.89 90.30 90.10 90.62 85.34 95.00 91.78 82.93 91.96 82.09 89.23 79.37 92.78 87.96 94.74 90.48 86.89 68.63 85.94 89.55 86.08 83.95 84.09 K jcn_only_AA chinmo chr2L + chr2L_1667982_1690116 chr2L_1667982_1670143 chr2L_1667913_1667981 5.83 NA NA 8.82 NA NA 8.00 10.34 6.90 NA NA 8.57 NA 0.00 NA 2.70 NA 4.76 NA 18.18 NA NA NA NA NA NA NA NA NA NA NA NA NA 3.23 NA NA NA NA NA NA NA 3.85 NA NA NA NA NA NA 4.65 NA NA NA NA NA NA NA NA NA K alternative_donor CG12734,I_chr3L_3183812_3183932,I_chr3L_3184645_3185360 chr3L + chr3L_3183998_3184248 chr3L_3184038_3184248 chr3L_3184249_3185272;chr3L_3183933_3183997 95.74 100.00 88.89 94.12 100.00 88.89 94.12 94.44 96.43 93.33 NA 92.31 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 95.45 93.75 100.00 100.00 95.65 94.74 100.00 100.00 94.12 95.00 100.00 90.48 94.44 94.29 94.74 97.50 83.33 100.00 100.00 90.00 94.74 86.36 95.00 95.83 81.25 95.24 100.00 96.88 100.00 92.86 100.00 100.00 95.65 94.44 100.00 K cassette CG8079,I_chr2R_11109323_11109403 chr2R + chr2R_11109329_11109548 chr2R_11109329_11109403;chr2R_11109486_11109548 chr2R_11109404_11109485 chr2R_11109233_11109328;chr2R_11109549_11109930 29.41 20.00 NA 41.67 NA NA NA 41.67 25.00 NA NA 30.77 NA NA NA NA NA 40.00 25.00 26.32 18.18 NA 23.81 40.00 NA NA 30.77 NA NA NA 60.00 NA NA 30.77 NA NA 29.41 25.00 23.53 23.08 NA 38.46 NA 44.44 NA NA NA NA 46.15 18.18 35.71 15.38 NA NA NA 21.43 29.41 NA K alternative_donor CG7059 chr3R + chr3R_18215796_18216915 chr3R_18215925_18216915 chr3R_18216916_18217028;chr3R_18215762_18215795 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention Nop60B,AT25722,F_chr2R_20073291_20073744,snoRNA:Or-CD9b,snmRNA:60Cb chr2R + chr2R_20073545_20073744 chr2R_20073544_20073545;chr2R_20073744_20073745 chr2R_20073514_20073544;chr2R_20073745_20073751 7.14 NA NA 15.00 NA NA 0.00 14.29 5.88 NA NA 7.41 NA 14.29 NA 13.95 NA NA NA 0.00 NA NA 0.00 5.56 NA NA NA 8.33 NA NA 9.52 11.76 NA 11.76 14.29 NA NA NA NA 0.00 NA 6.67 NA NA NA 4.76 NA NA 7.14 0.00 4.55 NA 10.71 10.53 NA NA 0.00 5.26 K jcn_only_AA Ide,I_chr3L_20366301_20366354,I_chr3L_20368434_20368519,I_chr3L_20368443_20368519 chr3L - chr3L_20368434_20368519;chr3L_20368462_20368519 chr3L_20368443_20368519 chr3L_20368520_20368619;chr3L_20368343_20368433 1.08 1.49 0.00 1.59 0.00 4.44 1.14 1.08 0.74 6.06 0.00 1.94 0.00 0.00 1.72 0.00 2.17 0.00 1.79 0.85 0.00 2.90 5.95 1.32 9.76 0.00 0.00 3.92 3.03 0.00 5.49 0.00 5.00 1.32 0.00 2.13 2.86 1.79 0.00 0.00 2.86 1.83 0.00 0.94 0.00 0.00 0.00 0.71 1.90 0.00 0.00 2.17 0.00 0.00 2.74 3.77 2.44 0.00 K intron_retention Eip71CD chr3L + chr3L_15504270_15505271 chr3L_15504269_15504270;chr3L_15505271_15505272 chr3L_15504153_15504269;chr3L_15505272_15505453 0.00 0.00 NA 0.00 0.00 NA 0.00 7.41 4.88 0.00 NA 2.27 NA 0.00 0.00 3.23 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 4.17 3.57 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ac3,I_chr2L_21635211_21637957,I_chr2L_21643253_21646594 chr2L + chr2L_21641146_21641248 chr2L_21641145_21641146;chr2L_21641248_21641249 chr2L_21641073_21641145;chr2L_21641249_21641324 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA 7.14 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention CG3777,Or1a chrX + chrX_209662_209807 chrX_209661_209662;chrX_209807_209808 chrX_209042_209661;chrX_209808_210411 42.27 NA NA NA NA NA 29.27 64.29 50.00 NA NA NA NA NA NA NA 46.15 27.27 33.33 36.36 NA NA NA NA NA 41.67 35.71 NA NA NA NA NA NA 40.00 NA NA NA NA NA 50.00 NA 63.64 NA NA NA 35.71 NA NA 58.33 NA NA NA NA NA 53.85 NA 42.86 NA K cassette Asph,C_chr2R_12000224_12000293,I_chr2R_12002559_12002858,I_chr2R_12003264_12003325 chr2R + chr2R_11998177_11999245 chr2R_11998177_11999005;chr2R_11999060_11999245 chr2R_11999006_11999059 chr2R_11998054_11998176;chr2R_11999246_11999431 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K intron_retention CG34123,RI_chr2R_11160894_11162043,I_chr2R_11167854_11168411 chr2R - chr2R_11172472_11180277 chr2R_11172471_11172472;chr2R_11180277_11180278 chr2R_11172389_11172471;chr2R_11180278_11180344 7.14 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG12213 chr3R - chr3R_7792009_7792209 chr3R_7792008_7792009;chr3R_7792209_7792210 chr3R_7791324_7792008;chr3R_7792210_7792455 15.69 19.35 10.42 20.20 17.02 12.07 12.24 11.54 10.71 15.15 9.09 17.53 13.04 9.76 13.79 15.52 12.00 14.00 11.29 12.24 18.92 24.59 15.07 15.71 21.88 19.30 21.15 21.15 16.18 19.30 21.74 8.77 17.78 14.08 21.74 18.00 19.30 19.51 16.39 11.70 13.85 18.42 7.69 17.86 11.36 11.90 20.41 7.02 13.46 15.69 20.63 23.68 10.53 20.00 11.94 18.06 18.18 9.01 K intron_retention Nup98 chr3R - chr3R_19602256_19602314 chr3R_19602255_19602256;chr3R_19602314_19602315 chr3R_19601244_19602255;chr3R_19602315_19602597 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG5794,I_chr3R_20475643_20475715 chr3R - chr3R_20475643_20475721 chr3R_20475643_20475715 chr3R_20475543_20475642;chr3R_20475722_20475736 72.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA 60.00 NA NA NA NA NA NA 77.78 NA NA NA NA NA NA NA NA NA K intron_retention I_chrX_3345099_3416710,CG10803,I_chrX_3380218_3380345 chrX + chrX_3380055_3380115 chrX_3380054_3380055;chrX_3380115_3380116 chrX_3379703_3380054;chrX_3380116_3380170 92.33 NA NA NA NA NA NA NA 90.91 NA NA 77.78 NA NA NA NA NA NA NA 93.75 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K mutually_exclusive CG11299,noncoding_8970,I_chr2R_19602423_19609308,I_chr2R_19619053_19619186 chr2R + chr2R_19601642_19609732,chr2R_19610399_19616571 chr2R_19601642_19602203,chr2R_19602423_19616571 chr2R_19609733_19610398 chr2R_19602204_19602422 chr2R_19601628_19601641;chr2R_19616572_19616757 33.33 33.33 NA 75.00 42.86 66.67 NA 0.00 16.67 NA NA 60.00 0.00 50.00 NA 33.33 NA 0.00 33.33 50.00 NA NA 8.33 0.00 20.00 75.00 0.00 50.00 0.00 0.00 50.00 NA NA NA 50.00 NA 50.00 16.67 50.00 60.00 25.00 16.67 0.00 NA 0.00 0.00 50.00 33.33 33.33 28.57 25.00 0.00 50.00 20.00 66.67 33.33 33.33 33.33 K intron_retention tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5955369_5958936 chr3R_5955368_5955369;chr3R_5958936_5958937 chr3R_5955217_5955368;chr3R_5958937_5959282 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1399,I_chr2R_3574133_3574191 chr2R - chr2R_3566312_3566372 chr2R_3566311_3566312;chr2R_3566372_3566373 chr2R_3566198_3566311;chr2R_3566373_3566777 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 1.61 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 K intron_retention CG11412,Tsp2A chrX + chrX_1237569_1237811 chrX_1237568_1237569;chrX_1237811_1237812 chrX_1237323_1237568;chrX_1237812_1238806 0.00 0.00 0.00 8.82 0.00 0.00 0.00 2.56 2.60 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 5.26 0.00 2.70 0.00 11.32 0.00 2.44 0.00 0.00 1.54 4.00 5.13 0.00 2.38 0.00 0.00 2.17 0.00 0.00 0.72 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention eIF4AIII chr3R + chr3R_4139867_4139927 chr3R_4139866_4139867;chr3R_4139927_4139928 chr3R_4139675_4139866;chr3R_4139928_4140629 1.68 0.00 1.98 0.00 2.22 0.00 1.26 1.57 0.00 0.00 0.00 1.29 0.00 2.17 0.00 2.99 2.22 0.97 0.00 1.92 0.00 3.45 0.00 1.80 2.41 0.88 1.80 13.64 3.39 0.00 4.35 3.03 0.00 0.00 1.56 2.47 1.68 0.00 1.40 0.00 1.72 0.53 0.00 0.00 6.74 3.81 0.00 1.96 3.07 3.16 1.89 0.00 5.13 1.89 1.68 1.89 5.15 12.50 K intron_retention pygo,noncoding_20344 chr3R - chr3R_27413824_27413939 chr3R_27413823_27413824;chr3R_27413939_27413940 chr3R_27413719_27413823;chr3R_27413940_27413967 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 91.67 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 87.50 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor bol,RI_chr3L_9117011_9118271 chr3L - chr3L_9116901_9118266;chr3L_9116877_9118266 chr3L_9117011_9118266 chr3L_9118267_9118272;chr3L_9116716_9116876 77.50 NA NA NA NA NA 75.00 NA 85.71 NA NA 50.00 80.00 NA NA 83.33 NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA 66.67 NA NA 60.00 NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA K intron_retention Qm,RI_chr3L_23087947_23088093,I_chr3L_23088406_23088824 chr3L - chr3L_23088312_23088374 chr3L_23088311_23088312;chr3L_23088374_23088375 chr3L_23088306_23088311;chr3L_23088375_23088402 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.28 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG10981 chr3R + chr3R_1650698_1650754;chr3R_1650698_1650757 chr3R_1650698_1650778 chr3R_1650443_1650697;chr3R_1650779_1651166 16.67 17.24 24.14 12.50 NA 23.08 10.81 17.24 14.04 NA NA 18.18 33.33 25.00 6.67 13.33 17.39 20.00 44.00 16.30 NA 16.67 16.67 17.95 11.11 24.14 13.21 NA NA 13.04 7.41 25.00 20.00 15.71 16.13 20.69 NA 25.93 20.59 20.00 NA 18.97 NA NA NA 12.50 9.68 8.33 11.76 13.51 21.05 NA 16.22 28.12 12.12 12.12 11.90 0.00 K intron_retention CG7656,I_chr3L_15580697_15581083 chr3L - chr3L_15580697_15581154 chr3L_15580696_15580697;chr3L_15581154_15581155 chr3L_15580597_15580696;chr3L_15581155_15581183 0.00 0.00 0.00 2.13 0.00 0.00 1.56 0.00 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 4.17 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention Csk,I_chr3R_7463337_7463512,I_chr3R_7468917_7472437,I_chr3R_7468917_7472509,I_chr3R_7468928_7472509 chr3R - chr3R_7463337_7463822 chr3R_7463336_7463337;chr3R_7463822_7463823 chr3R_7463237_7463336;chr3R_7463823_7463928 24.06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG2924,I_chrX_2168373_2168893 chrX - chrX_2159519_2159580 chrX_2159518_2159519;chrX_2159580_2159581 chrX_2159443_2159518;chrX_2159581_2159849 82.18 81.25 79.55 93.67 79.55 80.56 85.94 91.46 80.00 93.10 85.11 75.31 79.07 78.05 77.97 82.09 84.62 88.10 81.25 85.86 89.74 63.04 88.89 75.00 83.33 93.02 85.45 60.00 86.96 81.25 85.48 77.78 77.42 82.28 86.36 95.65 73.02 75.76 73.47 73.58 94.44 82.18 88.10 72.09 96.15 85.29 78.05 75.00 88.89 84.75 80.00 87.18 75.00 85.11 82.76 76.92 91.49 72.41 K intron_retention Bruce chr3R - chr3R_6140793_6140846 chr3R_6140792_6140793;chr3R_6140846_6140847 chr3R_6139961_6140792;chr3R_6140847_6141461 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.97 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Taf7 chr3R + chr3R_3733542_3733605 chr3R_3733541_3733542;chr3R_3733605_3733606 chr3R_3733404_3733541;chr3R_3733606_3735445 0.00 0.00 0.00 10.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.89 0.00 0.00 0.00 0.00 0.00 10.53 12.50 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention UBL3 chrX - chrX_15745230_15745617 chrX_15745229_15745230;chrX_15745617_15745618 chrX_15745121_15745229;chrX_15745618_15746576 0.00 0.00 0.00 0.00 0.00 0.00 2.27 3.45 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 6.25 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG6043,I_chr2L_13267973_13268086 chr2L + chr2L_13274377_13274690;chr2L_13274377_13274651 chr2L_13274377_13274642 chr2L_13274310_13274376;chr2L_13274691_13274770 52.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA 57.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 52.00 NA NA NA NA NA NA NA NA K intron_retention Pdk chr2R + chr2R_5320734_5321858 chr2R_5320733_5320734;chr2R_5321858_5321859 chr2R_5320635_5320733;chr2R_5321859_5321930 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 NA NA 100.00 100.00 NA 91.67 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 88.89 100.00 NA 100.00 100.00 100.00 100.00 87.50 88.89 100.00 100.00 93.75 NA K intron_retention foi,I_chr3L_8524905_8524976 chr3L + chr3L_8524250_8524316 chr3L_8524249_8524250;chr3L_8524316_8524317 chr3L_8523660_8524249;chr3L_8524317_8524665 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ATPCL,RFI_chr2R_11883823_11884399,I_chr2R_11887476_11888411 chr2R - chr2R_11882308_11882369 chr2R_11882307_11882308;chr2R_11882369_11882370 chr2R_11881967_11882307;chr2R_11882370_11883603 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention trsn,I_chr2R_6421904_6422354 chr2R - chr2R_6367103_6367164 chr2R_6367102_6367103;chr2R_6367164_6367165 chr2R_6366987_6367102;chr2R_6367165_6367261 0.00 0.00 0.00 1.27 0.00 0.00 4.17 0.00 1.72 0.00 4.55 4.76 1.89 5.00 0.00 0.00 0.00 2.38 0.00 3.03 0.00 0.00 10.26 0.00 12.00 0.00 4.44 3.23 20.00 7.41 15.56 0.00 0.00 2.44 0.00 13.33 3.85 8.57 0.00 0.00 8.70 0.00 2.50 0.00 2.44 0.00 0.00 4.35 0.00 3.57 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention lbm chr2R + chr2R_2938727_2938782 chr2R_2938726_2938727;chr2R_2938782_2938783 chr2R_2938568_2938726;chr2R_2938783_2939118 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.90 0.00 0.00 0.00 1.72 0.99 0.00 1.22 0.00 1.23 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.68 K intron_retention Rnp4F,I_chrX_5214525_5214591 chrX - chrX_5213967_5214030 chrX_5213966_5213967;chrX_5214030_5214031 chrX_5213846_5213966;chrX_5214031_5214253 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 2.38 1.35 2.44 0.00 0.00 0.00 2.04 0.00 0.00 1.82 0.00 0.00 0.00 1.23 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD hang,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16328892_16329177 chrX_16328906_16329177 chrX_16329178_16329187;chrX_16328792_16328891 99.43 98.48 100.00 99.37 99.28 99.26 100.00 100.00 99.70 99.31 98.41 98.79 98.80 100.00 98.71 100.00 100.00 100.00 98.90 99.22 97.87 99.08 100.00 99.29 100.00 98.58 96.45 100.00 99.69 100.00 100.00 98.66 99.43 100.00 99.23 98.21 99.50 99.26 99.26 98.98 99.37 100.00 100.00 99.55 100.00 99.55 100.00 99.43 100.00 96.91 98.09 98.72 100.00 100.00 100.00 99.02 100.00 100.00 K jcn_only_AA CG31720,F_chr2L_10234951_10235484 chr2L - chr2L_10236257_10236374;chr2L_10236287_10236374 chr2L_10236292_10236374 chr2L_10236375_10236547;chr2L_10236031_10236256 22.27 NA NA NA NA NA NA NA 4.55 NA NA NA NA NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17397707_17398371 chr2R_17397706_17397707;chr2R_17398371_17398372 chr2R_17397623_17397706;chr2R_17398372_17398565 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N multi_cassette F_chr3LHet_2242956_2248238,vtd,F_chr3LHet_2248430_2248476,F_chr3LHet_2248642_2276770 chr3LHet + chr3LHet_2247578_2254308 chr3LHet_2247578_2253758;chr3LHet_2253939_2253991;chr3LHet_2254248_2254308 chr3LHet_2253759_2253938;chr3LHet_2253992_2254247 chr3LHet_2247454_2247577;chr3LHet_2254309_2255059 100.00 100.00 100.00 60.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 86.27 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 71.43 100.00 100.00 89.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Kap3 chrX - chrX_11231294_11231361 chrX_11231297_11231361 chrX_11231362_11231367;chrX_11231160_11231293 100.00 NA 100.00 100.00 NA 100.00 100.00 96.00 96.36 NA NA 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 97.44 100.00 100.00 100.00 100.00 NA 100.00 100.00 95.00 100.00 100.00 97.06 100.00 100.00 NA 100.00 NA 100.00 NA NA NA NA 100.00 100.00 100.00 100.00 NA NA 97.78 100.00 NA NA K cassette Pvr,I_chr2L_8226604_8228082,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8226607_8227651;chr2L_8226607_8227669 chr2L_8226607_8226928;chr2L_8227151_8227669,chr2L_8227151_8227651 chr2L_8226929_8227150 chr2L_8226458_8226606;chr2L_8227670_8227720 76.74 73.33 67.65 74.29 80.56 66.67 69.49 78.69 76.47 76.67 88.89 77.21 60.98 68.89 77.19 89.06 88.10 82.05 75.51 93.49 72.73 50.00 75.95 77.42 76.74 67.39 82.93 70.00 85.00 87.88 85.96 80.95 67.50 68.18 75.00 86.11 76.74 75.51 71.01 83.53 66.67 68.87 65.71 87.50 70.00 71.74 78.12 82.61 82.76 83.33 79.59 76.47 86.67 94.74 69.01 78.79 78.95 73.68 K cassette CG30193,CG30190,noncoding_8782 chr2R + chr2R_18817843_18819037 chr2R_18817843_18817911;chr2R_18818804_18819037 chr2R_18817912_18818803 chr2R_18817716_18817842;chr2R_18819038_18819238 12.36 11.11 8.00 4.71 10.20 11.76 24.00 7.89 14.66 9.09 5.77 8.89 13.64 8.89 11.76 18.46 13.16 11.54 13.56 11.38 11.54 31.88 12.36 12.90 13.51 14.29 10.94 19.35 28.95 12.07 17.33 15.09 27.87 14.29 14.29 39.13 11.43 8.51 6.82 17.44 27.78 15.89 24.32 9.26 13.64 17.07 11.39 22.58 13.86 18.18 10.67 10.81 8.33 6.76 7.89 9.38 6.25 14.29 N jcn_only_AD Lag1,RI_chrX_6153758_6153930,I_chrX_6153758_6155077,RI_chrX_6153758_6161036,I_chrX_6160907_6161036 chrX - chrX_6153758_6155077;chrX_6153758_6154631;chrX_6153758_6153930;chrX_6153758_6161036;chrX_6153758_6154193;chrX_6153758_6160439 chrX_6153758_6154358 chrX_6153658_6153757;chrX_6161037_6161136 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.02 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG6697 chr3R + chr3R_18887499_18887598 chr3R_18887542_18887598 chr3R_18887599_18888474;chr3R_18887241_18887498 100.00 100.00 97.44 100.00 96.43 100.00 100.00 100.00 100.00 NA 100.00 98.21 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 97.83 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.25 98.15 100.00 100.00 100.00 100.00 100.00 100.00 95.12 100.00 100.00 100.00 100.00 100.00 97.56 97.96 100.00 98.31 100.00 NA 100.00 97.37 100.00 100.00 100.00 100.00 K alternative_acceptor CG10137,CG33116 chr2L + chr2L_19530190_19530913 chr2L_19530190_19530889 chr2L_19530090_19530189;chr2L_19530914_19531028 80.35 NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA 85.71 NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 62.50 NA NA NA NA NA NA NA K jcn_only_AA CG17715,RI_chr2L_22742106_22742215,I_chr2L_22742106_22746918 chr2L + chr2L_22742106_22742215 chr2L_22742106_22742160 chr2L_22742093_22742105;chr2L_22742216_22742315 100.00 100.00 98.36 99.29 97.26 98.73 100.00 100.00 100.00 100.00 100.00 98.33 100.00 100.00 99.15 100.00 98.55 100.00 100.00 100.00 100.00 100.00 99.06 100.00 100.00 100.00 98.88 100.00 95.83 98.88 99.38 100.00 100.00 100.00 100.00 100.00 98.72 100.00 98.86 100.00 100.00 98.90 100.00 100.00 100.00 99.15 100.00 99.17 100.00 98.97 100.00 98.46 100.00 95.77 100.00 98.68 100.00 100.00 K intron_retention sta chrX - chrX_1376949_1377143 chrX_1376948_1376949;chrX_1377143_1377144 chrX_1376851_1376948;chrX_1377144_1377223 87.09 88.89 80.00 80.00 92.86 82.35 85.00 85.00 78.38 91.67 88.89 92.86 NA 78.57 92.31 91.67 100.00 90.48 83.33 80.00 90.00 95.45 93.55 75.00 100.00 86.67 92.00 96.77 80.95 87.50 59.52 85.71 88.24 92.00 84.00 85.71 81.08 86.21 92.31 88.89 93.33 96.97 88.24 94.12 78.95 85.19 85.19 85.71 86.49 87.88 87.50 87.50 86.21 75.00 77.78 83.33 81.25 100.00 K intron_retention CG12107 chr2R + chr2R_3562330_3562399 chr2R_3562329_3562330;chr2R_3562399_3562400 chr2R_3562226_3562329;chr2R_3562400_3562960 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4872,Rcp chrX + chrX_16776552_16776642 chrX_16776551_16776552;chrX_16776642_16776643 chrX_16776542_16776551;chrX_16776643_16776831 36.84 NA 35.71 11.76 NA NA 36.36 NA 47.06 NA NA 36.84 NA NA NA 71.43 NA NA NA 37.50 NA NA 50.00 33.33 NA NA 40.00 NA NA NA 41.67 NA NA NA NA NA NA NA NA 66.67 NA 54.55 NA 41.67 30.77 35.71 26.09 NA 37.50 60.00 53.33 NA 25.00 30.77 NA 35.71 5.26 17.65 K alternative_acceptor Rm62,RI_chr3R_1834029_1834277 chr3R - chr3R_1834029_1834272 chr3R_1834032_1834272 chr3R_1834273_1834276;chr3R_1833929_1834028 45.12 60.87 NA 45.24 47.62 53.33 77.36 44.44 50.00 22.64 47.06 68.00 NA 54.55 36.36 25.81 53.33 46.67 52.38 57.58 50.00 NA 66.67 68.00 74.07 73.68 67.86 15.34 39.47 23.91 40.00 15.38 16.07 28.95 40.91 46.34 67.86 59.09 63.64 7.86 42.00 35.56 40.91 15.00 14.04 25.00 66.67 16.53 36.59 33.33 68.75 36.84 15.38 78.57 42.86 45.00 50.00 12.68 K intron_retention SMC1 chr3R + chr3R_19886989_19887044 chr3R_19886988_19886989;chr3R_19887044_19887045 chr3R_19886733_19886988;chr3R_19887045_19887349 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 8.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Crag,I_chrX_8494280_8494352 chrX + chrX_8493497_8493560 chrX_8493496_8493497;chrX_8493560_8493561 chrX_8493064_8493496;chrX_8493561_8494022 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 1.30 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG11489,I_chr3L_22273037_22275661 chr3L + chr3L_22276250_22276302;chr3L_22276239_22276302 chr3L_22276245_22276302 chr3L_22276303_22276572;chr3L_22276004_22276238 33.33 40.00 20.00 25.00 NA NA 50.00 18.75 NA NA NA 33.33 NA NA 33.33 37.50 33.33 20.00 NA 15.38 NA 38.46 NA NA NA 16.67 NA NA NA 40.00 25.00 NA 41.67 NA NA NA NA NA NA 33.33 NA 33.33 20.00 55.56 20.00 40.00 28.57 55.56 28.57 NA 38.46 NA NA 25.00 NA 50.00 33.33 27.27 K alternative_donor chic,RI_chr2L_5976783_5980950,I_chr2L_5979705_5979818,I_chr2L_5979705_5979941,RI_chr2L_5979705_5979951,I_chr2L_5979705_5979953,I_chr2L_5979705_5980025,I_chr2L_5979705_5980213,I_chr2L_5979705_5980370,I_chr2L_5979705_5980558,I_chr2L_5979705_5980632,I_chr2L_5979705_5980639,RI_chr2L_5979705_5980734 chr2L - chr2L_5979705_5980952;chr2L_5979705_5980846 chr2L_5979705_5980950 chr2L_5979605_5979704;chr2L_5980953_5981025 69.62 66.67 69.54 72.48 67.03 68.00 67.21 71.43 66.41 75.86 66.25 65.29 71.11 63.64 67.72 64.79 78.48 61.76 72.59 69.62 68.18 68.27 67.74 69.74 68.29 76.29 69.57 74.32 68.60 71.52 75.45 74.81 76.79 69.96 74.04 66.37 68.29 69.57 74.55 77.89 73.08 76.03 67.35 79.53 66.25 76.58 69.23 71.27 66.00 68.33 69.23 74.47 77.55 69.70 77.33 71.43 67.06 69.94 K alternative_acceptor nito,I_chr2R_3852832_3852883 chr2R + chr2R_3850109_3850273 chr2R_3850109_3850252 chr2R_3850045_3850108;chr2R_3850274_3850898 5.26 0.00 0.00 8.70 NA 0.00 6.25 4.76 6.90 NA NA 12.00 NA 0.00 7.14 3.70 NA 6.25 6.67 7.41 0.00 6.06 3.45 5.00 NA 10.53 NA 7.14 0.00 4.55 14.29 NA 5.26 4.55 0.00 60.00 6.25 5.26 NA 4.35 NA 3.23 NA 9.09 NA 6.25 NA 13.79 3.23 NA 4.55 10.53 NA NA 5.56 0.00 NA NA K jcn_only_AD CG5514,RI_chr3R_23768206_23768306,Gp93 chr3R + chr3R_23767856_23768306 chr3R_23768206_23768306 chr3R_23768307_23768406 2.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA K alternative_last_exon pug,CG14683 chr3R + chr3R_6522525_6525472 chr3R_6522525_6523347 chr3R_6525473_6525544 chr3R_6523348_6524698 chr3R_6522391_6522524 97.83 99.31 97.10 96.36 98.94 96.30 98.67 96.64 98.31 96.00 98.85 98.53 89.87 97.94 98.53 100.00 98.84 98.28 96.26 97.83 98.95 94.25 98.30 95.74 96.77 95.96 99.44 97.32 94.48 96.99 97.81 95.92 98.29 97.77 97.58 97.97 99.47 98.59 98.00 95.51 99.39 96.94 97.87 92.19 97.49 97.88 99.37 93.58 97.20 99.36 97.66 98.11 97.60 99.39 97.10 98.95 99.13 96.50 K cassette vap,RI_chrX_15897976_15899352,I_chrX_15897976_15899654,I_chrX_15898011_15899654,I_chrX_15898427_15899017,RI_chrX_15898427_15899654,RI_chrX_15899237_15899352,I_chrX_15899237_15899654 chrX - chrX_15898120_15899352;chrX_15898478_15899352 chrX_15898120_15899017,chrX_15898478_15899017;chrX_15899237_15899352 chrX_15899018_15899236 chrX_15897748_15898119;chrX_15899353_15899365 22.73 22.73 9.52 58.82 20.00 15.79 26.83 27.50 21.43 25.00 36.36 20.51 26.09 22.22 16.67 26.53 20.00 26.32 19.51 33.33 23.81 16.67 16.00 25.00 16.67 9.09 21.05 30.00 20.00 28.57 14.29 30.77 33.33 24.00 28.57 60.00 25.00 23.08 15.38 13.04 20.00 17.24 16.00 26.32 13.64 26.09 7.69 13.46 28.85 15.79 30.00 22.73 NA NA 15.62 16.67 30.77 25.81 K alternative_donor CG4250,I_chr2R_18551419_18551493,E_chr2R_18551558_18551756 chr2R + chr2R_18551380_18551493 chr2R_18551419_18551493 chr2R_18551494_18551557;chr2R_18551319_18551379 0.89 0.73 0.57 0.62 1.15 0.80 0.44 1.22 1.20 2.27 1.20 0.80 1.36 1.42 2.67 0.73 0.99 1.10 1.71 1.05 0.74 2.16 0.82 0.81 0.00 0.45 1.11 0.00 1.57 1.00 0.99 0.53 0.89 1.03 1.61 1.17 1.33 0.66 0.00 0.66 0.78 0.70 0.42 1.95 0.69 0.19 1.05 0.94 0.99 0.70 0.90 0.00 0.48 0.31 0.60 1.10 0.61 1.01 K intron_retention CG9948 chr3L + chr3L_6949263_6949314 chr3L_6949262_6949263;chr3L_6949314_6949315 chr3L_6949194_6949262;chr3L_6949315_6949497 100.00 100.00 87.50 92.00 88.89 100.00 100.00 97.14 96.67 NA 91.67 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 88.89 NA 100.00 NA NA 100.00 NA 93.33 NA 100.00 95.65 NA NA NA NA NA 100.00 NA 96.15 100.00 NA 100.00 85.71 100.00 91.67 100.00 100.00 88.89 NA 100.00 NA 100.00 84.62 100.00 94.44 K intron_retention CG5039 chr3R + chr3R_21504881_21504935 chr3R_21504880_21504881;chr3R_21504935_21504936 chr3R_21504814_21504880;chr3R_21504936_21504997 24.04 NA NA NA NA NA NA 25.00 NA NA NA 15.38 NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.08 NA NA NA NA 29.41 NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD pr-set7 chr3R + chr3R_10142132_10142198;chr3R_10142103_10142198 chr3R_10142094_10142198 chr3R_10142199_10142589;chr3R_10142068_10142093 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA K cassette Myo61F,mtacp1,I_chr3L_1330291_1330865,I_chr3L_1330291_1331279,RI_chr3L_1330929_1331041,l(3)02640 chr3L + chr3L_1330291_1331041 chr3L_1330291_1330865;chr3L_1330950_1331041 chr3L_1330866_1330949 chr3L_1330191_1330290;chr3L_1331042_1331054 5.99 4.10 4.70 11.11 5.53 5.24 9.02 6.80 5.71 6.56 7.92 5.05 7.81 6.63 6.69 7.60 7.41 4.73 6.55 4.74 4.74 6.62 3.38 5.39 4.81 7.34 5.70 9.94 19.05 8.37 6.72 6.91 10.42 5.48 4.85 7.03 5.99 4.16 4.61 14.43 15.50 5.75 5.76 7.08 7.76 7.57 2.85 17.37 4.56 5.80 3.83 4.28 3.30 2.99 6.57 4.27 2.86 9.96 K alternative_donor CG9674,I_chr3L_16793055_16793171,I_chr3L_16793055_16793190,I_chr3L_16793055_16800660 chr3L - chr3L_16793055_16793200;chr3L_16793055_16793196 chr3L_16793055_16793173 chr3L_16792955_16793054;chr3L_16793201_16793268 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 18.18 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG8478,CREF_chr3R_5589662_5589762 chr3R + chr3R_5589658_5589762;chr3R_5589658_5589747 chr3R_5589658_5589759 chr3R_5589562_5589657;chr3R_5589763_5589862 4.26 3.57 4.44 5.17 4.35 4.35 2.94 6.00 7.27 5.00 6.90 5.88 9.09 0.00 3.03 0.00 6.67 3.85 3.85 2.47 6.25 3.45 8.11 3.45 5.26 8.33 0.00 0.00 4.17 1.92 3.23 2.86 8.06 5.88 4.35 3.33 9.38 2.70 2.44 4.62 3.45 3.33 0.00 3.23 6.52 9.09 3.85 3.12 4.48 5.26 10.26 9.09 4.76 0.00 3.45 2.86 NA 8.77 K intron_retention CREF_chr3R_5589662_5589762,RpS29,CG12947,CG8500 chr3R + chr3R_5606240_5607418 chr3R_5606239_5606240;chr3R_5607418_5607419 chr3R_5605699_5606239;chr3R_5607419_5607949 63.07 NA NA 71.43 NA NA NA NA 75.00 NA NA 61.54 NA NA NA 88.24 NA NA NA 75.00 NA 86.96 55.00 54.55 NA NA NA NA NA 66.67 NA NA 48.00 72.73 NA 73.33 NA 63.64 NA 42.86 NA 75.00 NA NA 30.77 46.15 NA 61.54 62.50 69.23 60.00 NA NA NA NA NA NA 46.15 K jcn_only_AD E_chr4_592469_594231,Ephrin,I_chr4_595055_597604,RI_chr4_596272_596341 chr4 + chr4_592737_594238;chr4_592646_594238;chr4_592593_594238;chr4_592469_594238;chr4_592410_594238;chr4_592798_594238 chr4_592490_594238 chr4_594239_594331;chr4_592404_592409 16.28 18.52 8.70 20.83 0.00 14.29 10.53 17.50 16.28 NA NA 17.72 40.48 15.79 20.59 18.60 15.62 NA 14.89 11.29 6.90 NA 7.41 NA 21.74 15.62 9.09 NA NA NA 22.58 NA NA 12.66 25.00 3.57 NA NA NA 23.33 NA 16.13 17.65 28.57 NA NA NA NA 19.28 NA 21.62 31.82 NA NA 9.09 NA NA NA K alternative_donor ball chr3R - chr3R_22691957_22692048 chr3R_22691957_22692012 chr3R_22690327_22691956;chr3R_22692049_22692377 100.00 100.00 100.00 100.00 100.00 97.96 100.00 98.72 100.00 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 98.11 98.15 100.00 100.00 100.00 98.81 100.00 100.00 100.00 100.00 98.85 100.00 100.00 98.21 100.00 100.00 98.78 98.55 100.00 97.53 100.00 99.13 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention I_chr3L_212783_212843,Kaz1-ORFA,Kaz1-ORFB,Kaz1-ORFA_Kaz1-ORFB chr3L + chr3L_217443_217490 chr3L_217442_217443;chr3L_217490_217491 chr3L_217400_217442;chr3L_217491_217775 2.50 0.00 0.00 3.12 2.94 0.00 0.00 4.08 5.26 0.00 0.00 0.00 0.00 0.00 5.56 2.70 0.00 3.33 0.00 1.82 0.00 18.60 5.56 0.00 5.88 0.00 10.00 0.00 4.17 1.69 4.17 2.90 2.50 0.00 0.00 14.29 2.70 5.26 0.00 3.17 4.35 5.41 0.00 0.00 0.86 3.70 4.26 4.62 4.62 3.70 14.29 0.00 5.71 11.76 2.50 0.00 0.00 1.32 K alternative_acceptor CG8520,I_chr2R_8312580_8312637 chr2R + chr2R_8312580_8312637 chr2R_8312580_8312633 chr2R_8312480_8312579;chr2R_8312638_8312737 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 95.00 NA NA 92.86 NA 100.00 100.00 90.00 100.00 NA 100.00 94.74 90.00 87.50 100.00 93.75 NA 87.50 100.00 NA NA NA 93.75 NA NA 93.75 NA 88.89 100.00 NA 88.89 100.00 90.00 100.00 NA 86.67 NA 100.00 92.86 NA 100.00 100.00 90.00 100.00 100.00 100.00 90.91 88.89 94.44 100.00 K intron_retention CG8128,I_chrX_15591697_15591816 chrX + chrX_15591697_15592355 chrX_15591696_15591697;chrX_15592355_15592356 chrX_15591597_15591696;chrX_15592356_15592720 14.04 13.79 0.00 22.22 NA 6.67 28.57 10.34 18.52 NA NA 26.67 28.57 0.00 17.39 10.34 17.65 19.05 12.50 23.53 0.00 25.00 10.71 11.43 22.22 16.67 13.79 15.15 10.00 11.11 19.05 17.39 12.90 23.33 14.29 18.18 17.39 19.23 12.82 9.09 31.58 16.67 12.50 19.05 22.22 10.53 14.29 9.09 9.68 15.00 11.90 0.00 13.33 13.33 15.00 11.54 6.67 3.33 K intron_retention exba,RI_chr3R_1423238_1423301,snoRNA:Psi28S-3571,I_chr3R_1425087_1425925,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1423238_1423493 chr3R_1423237_1423238;chr3R_1423493_1423494 chr3R_1423138_1423237;chr3R_1423494_1423659 0.00 0.00 0.00 0.31 0.00 0.00 0.29 0.31 0.40 0.00 0.00 0.49 0.54 0.00 0.00 0.31 0.00 0.00 0.20 0.00 0.00 0.00 0.23 0.00 0.85 0.00 0.00 0.76 0.00 0.00 0.12 0.00 0.00 0.56 0.00 0.52 0.00 0.00 0.00 0.00 0.97 0.26 0.00 0.00 0.00 0.00 0.00 1.21 0.27 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 2.94 K intron_retention I_chr2L_12099367_12099435,Aats-thr chr2L + chr2L_12103835_12104491 chr2L_12103834_12103835;chr2L_12104491_12104492 chr2L_12103774_12103834;chr2L_12104492_12104552 8.25 6.85 11.44 12.62 3.30 4.88 12.80 8.64 7.24 8.54 13.71 6.70 7.53 9.66 9.44 11.79 12.05 9.33 8.25 5.67 11.17 3.43 8.07 9.28 21.69 14.36 13.33 7.39 9.86 6.86 9.46 3.59 8.45 9.87 7.23 14.73 7.25 4.63 7.14 6.33 14.44 8.26 10.62 8.59 7.14 6.10 9.02 3.94 7.44 4.76 10.69 8.57 6.41 4.71 7.72 7.61 7.76 5.84 N alternative_donor Aldolase,I_chr3R_22083764_22086684 chr3R - chr3R_22082030_22082195;chr3R_22082030_22082575 chr3R_22082030_22082256 chr3R_22081992_22082029 12.50 20.00 0.00 28.57 25.00 25.00 10.00 11.11 7.14 7.14 NA 40.00 12.50 NA 0.00 11.11 25.00 0.00 0.00 8.33 0.00 14.29 12.50 12.50 20.00 0.00 10.00 19.35 28.00 45.45 10.00 16.67 0.00 10.00 20.00 0.00 0.00 0.00 14.29 58.82 15.38 15.38 16.67 0.00 50.00 0.00 16.67 16.67 11.11 10.00 0.00 16.67 NA 25.00 16.67 44.44 0.00 71.43 K jcn_only_AD CG7609,ATPsyn-gamma,I_chr3R_25574492_25574541 chr3R - chr3R_25574492_25574545 chr3R_25574492_25574541 chr3R_25574392_25574491;chr3R_25574546_25574564 1.62 1.06 1.74 1.77 1.33 2.22 2.97 1.64 1.45 1.35 2.69 1.62 1.38 1.31 1.12 1.24 0.60 2.14 1.96 1.60 1.72 1.30 2.70 0.54 1.89 1.05 2.38 0.00 0.00 0.00 1.43 3.35 0.42 0.86 3.70 0.00 2.42 2.04 3.31 1.78 2.56 1.52 1.64 1.25 0.42 0.69 0.81 0.00 0.94 3.92 3.26 2.06 2.00 9.09 0.95 2.06 1.77 1.92 K cassette CG2316,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_213969,RI_chr4_209875_214450,RI_chr4_210688_211927,I_chr4_210688_213991,I_chr4_210688_214019,I_chr4_210688_214049,RI_chr4_210688_214450 chr4 - chr4_210688_213969;chr4_209875_213969;chr4_210688_214298;chr4_209875_214298 chr4_210688_211934,chr4_209875_211934;chr4_212013_213969,chr4_212013_214298 chr4_211935_212012 chr4_209775_209874;chr4_214299_214311 6.46 NA NA 4.76 NA NA 3.85 5.88 7.69 NA NA 10.71 NA 7.14 7.14 6.25 NA NA 0.00 3.70 NA NA NA NA NA NA NA NA NA NA 6.67 NA NA 5.56 NA NA NA NA NA NA NA 9.52 0.00 NA NA NA NA NA 8.33 NA NA NA NA NA 7.69 NA NA NA K jcn_only_AD PGRP-LC chr3L + chr3L_9338168_9340739;chr3L_9338225_9340739 chr3L_9340350_9340739 chr3L_9340740_9340757 17.52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 19.05 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.00 NA NA NA NA NA NA NA NA NA K cassette caz,noncoding_24110,RI_chrX_16183147_16183258,RI_chrX_16183356_16185973 chrX + chrX_16182991_16183258 chrX_16182991_16183059;chrX_16183192_16183258 chrX_16183060_16183191 chrX_16182887_16182990;chrX_16183259_16183355 92.45 93.25 90.82 95.77 94.87 92.00 93.27 92.61 95.12 89.06 91.94 89.08 91.04 93.81 92.37 92.45 95.40 94.79 94.90 91.36 88.16 86.16 87.46 90.77 88.82 88.75 94.80 94.89 79.80 87.73 90.13 88.10 96.24 93.87 91.98 85.19 90.48 93.62 93.14 93.09 90.53 95.04 93.18 98.20 93.14 91.90 95.81 92.17 92.75 92.43 89.88 92.73 97.01 93.83 91.49 94.23 93.69 90.78 K intron_retention CG31150,Hmt-1 chr3R - chr3R_11670487_11670543 chr3R_11670486_11670487;chr3R_11670543_11670544 chr3R_11670188_11670486;chr3R_11670544_11671142 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.97 0.52 1.59 0.00 0.36 0.00 0.00 0.00 1.60 0.68 0.00 0.47 0.23 0.00 0.00 0.90 0.00 0.00 0.00 0.88 1.32 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.48 0.00 0.96 0.00 1.15 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.27 0.31 0.00 0.00 0.00 0.00 0.48 0.44 0.00 0.00 K intron_retention CycH,CG7407 chr3L + chr3L_21815698_21815756 chr3L_21815697_21815698;chr3L_21815756_21815757 chr3L_21815496_21815697;chr3L_21815757_21815985 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 3.85 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG13124,I_chr2L_9905292_9905551,I_chr2L_9905292_9905677,RI_chr2L_9907784_9908405,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9905053_9905137 chr2L_9905052_9905053;chr2L_9905137_9905138 chr2L_9904827_9905052;chr2L_9905138_9905241 41.18 41.18 34.21 63.64 50.00 46.15 76.92 57.14 52.08 41.67 63.64 25.68 66.67 45.00 39.29 65.00 43.75 32.14 44.00 37.21 47.37 16.38 47.92 50.00 57.69 63.16 42.22 40.00 27.78 35.48 47.62 28.12 34.78 38.24 40.00 58.06 48.08 35.29 39.58 31.67 48.48 45.65 40.91 28.57 22.45 38.33 28.12 25.53 32.14 41.18 46.15 47.37 33.33 36.67 48.48 39.13 50.00 29.79 K alternative_acceptor l(1)G0222,FI_chrX_17466478_17466552,I_chrX_17473084_17473137 chrX - chrX_17466478_17466552 chrX_17466493_17466552 chrX_17466553_17466652;chrX_17466378_17466477 95.00 94.44 95.83 88.57 94.44 92.00 84.44 97.73 88.06 92.31 87.50 93.33 92.31 96.00 90.32 91.89 95.83 95.24 96.30 94.83 95.45 94.44 100.00 97.62 95.24 92.00 90.24 95.00 95.00 93.55 100.00 93.75 93.55 91.11 97.06 95.24 91.43 96.97 90.32 95.12 100.00 96.36 95.24 100.00 100.00 97.14 94.74 100.00 97.87 96.30 92.45 96.15 80.95 93.75 91.18 97.50 95.35 90.00 K jcn_only_AD rin,I_chr3R_9476825_9476895 chr3R + chr3R_9472923_9473104;chr3R_9473004_9473104 chr3R_9472992_9473104 chr3R_9473105_9473268;chr3R_9472709_9472922 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.31 0.00 0.00 2.33 0.00 0.00 0.83 0.00 0.33 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.49 0.00 0.00 0.00 K alternative_donor Gpo-1,I_chr2R_11747621_11747699,EI_chr2R_11747445_11747699,I_chr2R_11749758_11750187,I_chr2R_11756325_11756380 chr2R - chr2R_11748259_11749386 chr2R_11748259_11749143 chr2R_11748106_11748258;chr2R_11749387_11749428 72.08 80.00 80.00 83.33 NA NA 63.64 83.33 85.71 62.50 NA 100.00 NA NA 100.00 85.71 NA NA NA 88.89 NA 92.31 63.64 66.67 77.78 80.00 71.43 72.73 64.29 54.55 77.78 53.85 53.33 77.78 83.33 55.00 87.50 80.00 50.00 56.25 58.82 90.00 NA 47.06 53.85 56.25 40.00 66.67 62.50 NA 71.43 80.00 NA 41.67 100.00 85.71 NA 69.23 K intron_retention CtBP chr3R + chr3R_8837895_8845063 chr3R_8837894_8837895;chr3R_8845063_8845064 chr3R_8837730_8837894;chr3R_8845064_8845536 100.00 100.00 100.00 98.25 100.00 97.30 100.00 100.00 100.00 100.00 100.00 98.36 100.00 98.15 100.00 100.00 100.00 100.00 100.00 98.59 100.00 100.00 97.73 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.91 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 92.86 K intron_retention RpS14a,I_chrX_7827880_7828041,F_chrX_7841357_7841447 chrX + chrX_7827880_7828041 chrX_7827879_7827880;chrX_7828041_7828042 chrX_7827780_7827879;chrX_7828042_7828141 92.86 NA NA 91.67 NA NA 95.45 81.82 94.12 NA NA 73.33 NA NA NA 92.86 NA NA NA 90.00 NA NA NA NA NA NA 91.67 92.86 100.00 NA 93.33 NA NA 90.00 NA 100.00 NA NA NA 100.00 NA 90.00 NA NA NA NA NA NA 92.86 NA NA NA NA NA NA NA 53.85 NA K intron_retention REI_chrX_16172581_16177702,CG3560 chrX + chrX_16180646_16180708 chrX_16180645_16180646;chrX_16180708_16180709 chrX_16180598_16180645;chrX_16180709_16181067 0.26 0.00 0.00 0.24 0.40 0.00 0.63 0.39 0.56 0.66 0.61 0.27 0.81 0.00 0.43 0.68 0.42 0.00 0.61 0.48 0.00 1.68 0.00 0.00 0.27 0.00 0.88 2.06 0.99 0.00 0.22 0.00 0.00 0.57 0.00 0.28 0.33 0.00 0.31 0.15 0.00 0.41 0.00 0.00 0.00 0.00 0.53 0.00 0.68 0.45 0.00 0.00 0.00 0.26 1.20 0.28 0.00 0.00 N intron_retention mfrn,I_chr3R_23770737_23770817,I_chr3R_23771063_23771153,I_chr3R_23771063_23772599 chr3R - chr3R_23771063_23771137 chr3R_23771062_23771063;chr3R_23771137_23771138 chr3R_23770974_23771062;chr3R_23771138_23771527 63.16 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 63.16 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention retm,I_chr2L_6451015_6451364,I_chr2L_6459995_6460559,I_chr2L_6464140_6465326 chr2L - chr2L_6452056_6452121 chr2L_6452055_6452056;chr2L_6452121_6452122 chr2L_6451797_6452055;chr2L_6452122_6453057 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 4.76 0.00 0.00 NA 0.00 0.00 NA 18.75 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon CG42231,chif,CaBP1 chr2L - chr2L_16343305_16351926 chr2L_16349473_16351926 chr2L_16342428_16343304 chr2L_16343592_16349472 chr2L_16351927_16352093 69.86 73.81 73.47 53.19 65.79 67.44 42.17 59.14 67.35 81.82 62.86 67.07 82.35 66.67 68.00 77.61 76.92 76.09 73.08 74.51 67.57 62.32 81.94 72.13 80.00 59.18 56.34 63.16 88.89 74.58 70.69 70.73 78.05 68.13 63.79 68.18 77.19 75.76 78.57 73.00 63.46 66.67 73.17 75.44 58.49 70.59 64.44 82.95 72.73 60.42 69.86 66.67 77.78 61.11 70.97 64.44 50.98 68.24 K intron_retention par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350437_15351846 chr2R_15350436_15350437;chr2R_15351846_15351847 chr2R_15350337_15350436;chr2R_15351847_15351914 69.40 NA NA 66.67 NA NA 83.33 75.00 69.57 NA NA 69.23 NA 76.92 50.00 76.47 81.82 NA 66.67 68.75 NA 66.67 NA NA NA 76.92 NA NA 54.55 NA 50.00 NA NA 60.87 NA NA NA NA NA NA NA 78.57 75.00 NA NA NA NA NA 50.00 NA NA NA NA NA 77.78 NA NA NA K mutually_exclusive shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9754481_9755660,chr2R_9755855_9757364 chr2R_9754481_9754629,chr2R_9754809_9757364 chr2R_9755661_9755854 chr2R_9754630_9754808 chr2R_9754381_9754480;chr2R_9757365_9757464 0.88 1.21 0.47 1.63 1.03 1.34 1.97 1.12 1.27 0.67 1.10 0.55 3.07 0.55 0.84 0.60 0.98 1.27 0.00 0.85 0.00 0.87 1.83 0.85 0.75 0.97 1.32 10.06 1.36 0.90 0.40 0.68 0.83 0.88 0.84 1.08 1.06 0.52 0.99 0.81 0.35 0.77 1.65 1.35 0.92 0.53 1.03 0.16 1.33 0.57 1.95 0.78 0.46 1.02 0.37 0.80 1.21 0.22 K alternative_donor Rab23,I_chr3R_1508710_1508882 chr3R - chr3R_1508710_1510597;chr3R_1508710_1511119 chr3R_1508710_1508882 chr3R_1508610_1508709;chr3R_1511120_1511186 33.33 50.00 20.00 33.33 16.67 100.00 20.00 10.00 16.67 33.33 18.18 22.22 20.00 33.33 33.33 28.57 25.00 25.00 25.00 10.53 33.33 50.00 33.33 33.33 50.00 16.67 50.00 50.00 50.00 33.33 11.11 33.33 33.33 25.00 50.00 50.00 33.33 50.00 33.33 13.33 100.00 18.18 25.00 25.00 NA 20.00 50.00 50.00 13.33 50.00 66.67 50.00 25.00 NA 12.50 50.00 33.33 20.00 K jcn_only_AA CG4065,RI_chr2R_20024231_20024292,I_chr2R_20024873_20024921 chr2R - chr2R_20025292_20025383 chr2R_20025295_20025383 chr2R_20025384_20025494;chr2R_20024922_20025291 79.34 70.97 NA NA NA NA NA NA 75.00 NA NA 66.67 NA NA NA NA NA NA NA 84.44 NA 85.37 79.52 85.51 87.80 NA 76.67 80.00 NA 88.46 NA NA NA NA 75.00 80.56 80.00 72.97 80.36 72.50 NA 85.71 NA 60.00 78.57 72.73 73.33 NA 73.08 83.78 78.00 79.17 77.42 80.85 NA 81.58 80.00 NA K alternative_acceptor l(3)05822,I_chr3R_14115739_14115801 chr3R - chr3R_14115739_14115801 chr3R_14115743_14115801 chr3R_14115802_14115901;chr3R_14115639_14115738 98.77 98.21 98.21 98.57 100.00 100.00 100.00 98.77 98.99 97.87 98.08 98.84 97.83 97.96 98.11 98.39 100.00 100.00 98.18 98.90 95.74 100.00 98.18 98.15 100.00 98.36 100.00 93.33 98.88 100.00 97.92 100.00 100.00 100.00 98.00 100.00 98.61 100.00 98.41 97.59 100.00 99.07 97.56 98.39 96.81 98.89 100.00 100.00 98.11 98.48 100.00 97.62 100.00 100.00 100.00 96.23 98.33 99.25 K jcn_only_AD R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8088371_8089184;chr2L_8088517_8089184 chr2L_8088454_8089184 chr2L_8089185_8089284;chr2L_8088362_8088370 86.11 NA 86.11 73.33 NA NA 75.51 83.67 82.35 NA NA 92.98 77.50 87.50 92.31 81.31 NA 80.95 81.40 93.98 81.82 NA 85.19 NA 86.36 76.67 NA NA NA NA 88.57 NA 81.82 79.45 100.00 91.30 NA NA NA 96.97 82.61 85.00 83.33 86.36 NA 96.15 NA NA 90.43 NA 92.31 NA 90.00 NA 89.29 86.96 NA NA K intron_retention Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16112732_16112791 chr3L_16112731_16112732;chr3L_16112791_16112792 chr3L_16112558_16112731;chr3L_16112792_16112917 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.97 1.22 3.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.33 4.17 0.00 0.00 0.54 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Ranbp16,I_chrX_15826655_15827277 chrX - chrX_15827572_15827638 chrX_15827572_15827633 chrX_15827176_15827571;chrX_15827639_15827691 100.00 96.00 96.97 93.48 100.00 95.83 94.34 100.00 98.77 100.00 95.83 100.00 95.83 96.00 89.66 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 NA NA 100.00 NA NA 96.00 100.00 100.00 NA 100.00 98.15 NA NA 100.00 NA 100.00 98.21 NA 98.31 100.00 97.30 NA 100.00 NA 100.00 97.96 NA 100.00 NA NA NA 100.00 NA NA NA K jcn_only_AA CG1021,I_chr3R_2217711_2231099,I_chr3R_2217711_2231390,RI_chr3R_2217711_2231463,I_chr3R_2217742_2218601,I_chr3R_2217742_2219453,I_chr3R_2218465_2231390,RI_chr3R_2218465_2231463,I_chr3R_2218682_2231463,I_chr3R_2219634_2231390,I_chr3R_2231383_2231463 chr3R - chr3R_2218465_2218601;chr3R_2217711_2218601 chr3R_2217742_2218601 chr3R_2218602_2218681;chr3R_2217642_2217710 2.38 4.76 0.00 0.00 NA NA NA 0.00 0.00 NA NA 2.56 0.00 NA 3.57 0.00 NA NA NA 4.88 0.00 2.56 2.44 2.00 5.88 9.09 0.00 5.71 NA NA NA NA 0.00 2.13 NA 11.11 6.06 2.86 5.77 0.00 NA 3.12 NA 0.00 NA NA 3.03 NA 2.78 1.85 2.63 0.00 2.38 NA 0.00 0.00 0.00 8.70 K alternative_acceptor Tre1,I_chrX_5569518_5570588 chrX - chrX_5568186_5568254 chrX_5568207_5568254 chrX_5568255_5568742;chrX_5567863_5568185 0.34 0.70 0.00 0.53 0.68 0.00 0.51 0.00 1.11 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.49 0.00 1.01 0.00 0.32 0.00 1.06 0.00 0.00 0.00 0.77 0.00 0.00 0.53 0.50 0.53 1.07 0.27 0.00 0.88 0.34 1.21 0.90 0.00 0.00 0.37 0.82 0.70 0.58 0.37 0.89 1.27 0.79 0.00 0.88 0.00 0.00 0.00 0.36 K jcn_only_AA chrb,I_chr3L_11481702_11483304 chr3L + chr3L_11488057_11488131 chr3L_11488057_11488116 chr3L_11487979_11488056;chr3L_11488132_11489796 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA NA NA NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 96.97 NA NA NA 100.00 NA NA NA NA 100.00 100.00 NA NA NA 100.00 100.00 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA NA K jcn_only_AA Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4847655_4847757;chrX_4847655_4848149 chrX_4847655_4848167 chrX_4847526_4847654;chrX_4848168_4848168 13.79 12.00 18.42 5.26 21.62 17.65 28.89 10.87 19.78 15.91 16.67 12.20 NA 14.29 16.22 9.30 10.26 NA 12.50 6.76 16.67 17.02 19.18 15.71 14.89 NA 8.89 6.25 8.11 18.64 13.79 16.13 8.82 8.77 11.11 7.69 19.54 17.39 21.62 6.25 8.33 9.43 9.09 17.31 11.11 8.77 22.92 12.00 9.80 19.23 20.59 6.25 NA 13.16 9.09 19.35 20.00 15.69 K alternative_donor nudE chr3L + chr3L_9892498_9892825;chr3L_9892375_9892825 chr3L_9892456_9892825 chr3L_9892826_9893184;chr3L_9892344_9892374 92.86 85.71 100.00 93.75 NA NA 87.50 92.86 100.00 NA NA 91.67 88.89 87.50 NA 92.00 87.50 100.00 88.89 84.21 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 94.12 NA NA NA NA NA 90.91 83.33 100.00 100.00 NA NA 100.00 100.00 NA 94.12 NA 85.71 NA NA NA 100.00 NA NA NA K alternative_acceptor Thd1,I_chr4_572026_572616,RI_chr4_574364_578068 chr4 - chr4_572007_572616 chr4_572026_572616 chr4_572617_572665;chr4_571926_572006 0.00 0.00 0.00 2.17 2.78 0.00 0.00 0.85 0.85 4.17 2.94 1.27 1.59 2.38 0.00 2.33 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 3.85 1.92 0.00 3.70 0.00 2.50 1.72 0.00 3.33 0.85 0.00 0.00 4.35 0.00 0.00 0.00 NA 0.79 0.00 0.00 NA 0.00 NA 2.56 1.00 0.00 2.70 0.00 NA NA 0.00 0.00 0.00 0.00 K jcn_only_AA Lag1,RI_chrX_6153758_6153930,I_chrX_6153758_6155077,RI_chrX_6153758_6161036,I_chrX_6160751_6160887,I_chrX_6160907_6161036 chrX - chrX_6160907_6161036;chrX_6160751_6161036 chrX_6153758_6161036 chrX_6161037_6161136 3.05 3.45 0.00 13.89 8.00 4.55 0.00 1.85 3.08 3.85 26.92 1.45 2.70 2.38 0.00 3.33 5.26 5.26 7.14 1.39 3.45 3.51 2.33 0.00 NA 1.39 6.06 NA 2.44 0.00 1.85 10.71 2.56 3.61 7.32 0.00 4.76 7.41 3.57 7.14 2.50 7.14 4.00 0.00 3.03 0.00 2.56 1.22 2.11 7.32 3.12 NA 0.00 14.29 0.00 6.67 0.00 0.00 K intron_retention Ncc69,I_chr3L_12363433_12363982,I_chr3L_12364701_12364860 chr3L - chr3L_12363433_12364643 chr3L_12363432_12363433;chr3L_12364643_12364644 chr3L_12363335_12363432;chr3L_12364644_12364700 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 1.41 0.00 0.00 0.00 5.26 0.00 0.00 3.92 0.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD shi,RI_chrX_15786633_15786860,RE_chrX_15793108_15795563 chrX + chrX_15786474_15786860;chrX_15786603_15786860;chrX_15786615_15786860;chrX_15786200_15786860;chrX_15786394_15786860 chrX_15786285_15786860 chrX_15786861_15786960;chrX_15786192_15786199 23.53 10.00 34.38 25.86 47.62 28.57 8.08 19.48 29.09 NA 27.78 22.22 25.49 15.56 24.32 13.04 30.00 NA 33.85 36.11 48.65 NA 0.00 0.00 3.70 21.43 2.22 NA NA 19.51 13.73 NA 38.10 22.73 3.23 13.64 4.35 0.00 NA 23.53 22.22 35.82 25.00 29.27 NA 25.71 NA 44.23 24.29 NA 4.44 0.00 NA NA 29.27 NA NA 66.67 K intron_retention CHIP chr2L + chr2L_10438240_10438300 chr2L_10438239_10438240;chr2L_10438300_10438301 chr2L_10438041_10438239;chr2L_10438301_10438442 0.00 0.00 0.00 0.00 0.00 3.70 1.82 0.00 5.13 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.85 0.00 NA 0.00 0.00 2.63 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32343,I_chr3L_326540_326703,RI_chr3L_326725_326866 chr3L - chr3L_325695_325754 chr3L_325694_325695;chr3L_325754_325755 chr3L_325008_325694;chr3L_325755_325824 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 2.94 0.00 0.00 4.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.41 13.04 0.00 0.00 0.00 0.00 1.92 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13165623_13166434 chrX_13165623_13166422 chrX_13165515_13165622;chrX_13166435_13166489 0.00 NA NA 0.00 NA NA 0.00 20.00 0.00 NA NA 0.00 NA 33.33 NA 25.45 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K intron_retention CaMKII,I_chr4_1059085_1060638,I_chr4_1059085_1065781,RI_chr4_1061742_1064093,RI_chr4_1061742_1065781,I_chr4_1061989_1065781,RI_chr4_1063745_1065781,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1059061_1060638 chr4_1059060_1059061;chr4_1060638_1060639 chr4_1059054_1059060;chr4_1060639_1060704 13.81 NA NA 0.00 NA NA 41.67 14.29 17.65 NA NA 7.14 NA NA NA 13.33 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA 24.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD Cip4,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4324451_4324921 chr3L_4324451_4324861 chr3L_4324284_4324450;chr3L_4324922_4324996 58.23 52.86 37.74 57.00 45.24 58.33 61.60 57.95 61.64 90.00 36.36 50.00 72.00 46.67 37.04 47.17 57.14 77.50 46.51 65.81 50.00 75.00 55.83 58.23 35.06 45.76 53.33 50.00 86.05 66.20 48.00 62.16 56.60 55.42 72.50 62.26 63.64 65.96 54.17 46.24 69.57 54.69 47.73 63.16 85.71 67.61 69.35 76.29 57.66 56.82 61.39 66.67 77.14 66.00 33.93 74.36 67.50 84.75 K alternative_donor f,F_chrX_17172853_17172983 chrX + chrX_17172177_17172983 chrX_17172853_17172983 chrX_17172984_17173083;chrX_17172155_17172176 9.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG4686 chr3R + chr3R_15690389_15690710 chr3R_15690648_15690710 chr3R_15690711_15691019;chr3R_15690320_15690388 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27044867;chr3R_27044771_27045188;chr3R_27044771_27045257;chr3R_27044771_27045132;chr3R_27044771_27045027;chr3R_27044771_27045110;chr3R_27044771_27044990;chr3R_27044771_27044895 chr3R_27044771_27044831 chr3R_27044671_27044770;chr3R_27045258_27045273 0.45 0.45 0.24 0.26 0.00 0.25 0.85 0.11 0.39 1.43 0.27 0.37 0.34 0.32 0.17 0.58 0.00 0.63 0.38 0.38 0.00 1.12 3.70 6.45 0.00 0.38 9.52 1.79 2.11 1.01 0.36 0.30 0.79 0.45 1.92 1.79 2.38 6.25 2.86 1.40 1.56 0.28 0.24 2.88 0.24 0.43 3.85 0.27 0.20 4.00 9.52 4.17 0.00 6.25 0.17 5.56 1.89 0.50 K jcn_only_AA Imp,I_chrX_10699490_10700695,RI_chrX_10699665_10700501,RI_chrX_10699665_10700695 chrX - chrX_10699665_10700501;chrX_10699547_10700501 chrX_10699503_10700501 chrX_10700502_10700547;chrX_10699299_10699502 66.07 NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA 57.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG17082,I_chr2R_632143_635290,R_chr2R_642176_644740,I_chr2R_644094_644145,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_631984_636726;chr2R_632083_636726;chr2R_631971_636726;chr2R_632143_636726 chr2R_631907_636726 chr2R_636727_636891;chr2R_631902_631906 58.33 NA NA 50.00 NA NA 50.00 58.33 70.59 NA NA 66.67 40.00 80.00 NA 50.00 87.50 NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 58.33 NA NA NA NA NA NA NA 61.54 NA NA NA NA NA NA 58.33 NA NA NA NA NA NA NA NA NA K intron_retention lok,RI_chr2L_20063248_20063377 chr2L + chr2L_20062013_20062147 chr2L_20062012_20062013;chr2L_20062147_20062148 chr2L_20061782_20062012;chr2L_20062148_20062305 28.57 33.33 24.24 41.18 26.32 16.67 33.33 20.63 30.61 26.32 28.57 36.59 36.84 32.00 29.17 22.45 37.50 27.27 30.77 28.99 17.39 27.59 12.50 31.03 22.73 44.44 24.00 30.77 13.16 23.26 19.51 31.58 23.53 26.32 33.33 14.58 40.00 26.09 26.92 12.77 33.33 21.43 40.91 31.03 33.33 33.33 29.63 30.56 26.15 16.67 21.05 33.33 20.00 26.09 29.73 29.41 28.57 27.42 K alternative_last_exon Mvl,RI_chr3R_16877854_16877923,E_chr3R_16880765_16881066 chr3R - chr3R_16878968_16881066,chr3R_16879341_16881066;chr3R_16879657_16881066;chr3R_16880764_16881066 chr3R_16877965_16881066 chr3R_16878926_16878967;chr3R_16879584_16879656;chr3R_16880370_16880763 chr3R_16877097_16877964 chr3R_16881067_16881137 89.22 92.00 85.96 87.91 89.74 93.62 88.00 75.24 90.00 97.87 85.71 88.51 85.71 84.00 87.50 77.22 78.57 86.36 80.70 84.62 87.80 90.54 86.89 92.31 91.18 86.84 91.94 75.00 96.43 88.89 88.89 94.92 91.04 85.06 88.64 90.20 93.22 87.80 90.16 85.39 93.75 87.38 89.47 94.29 91.43 94.87 91.53 93.67 89.22 87.72 95.16 91.67 91.11 86.05 81.97 92.31 90.67 93.69 K jcn_only_AD CG3714,I_chr2L_4190825_4191774,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4192969_4193324 chr2L_4192969_4193309 chr2L_4192958_4192968;chr2L_4193325_4193424 97.92 NA 100.00 95.45 NA NA 100.00 90.48 100.00 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA 98.18 95.00 96.15 NA NA 91.67 95.00 98.89 91.67 100.00 100.00 100.00 NA 100.00 96.88 100.00 100.00 96.88 97.92 96.30 92.86 NA 98.41 93.55 100.00 NA 91.94 NA 100.00 93.94 NA NA NA NA 96.77 NA 95.24 K jcn_only_AD sop,RI_chr2L_9897132_9897211 chr2L - chr2L_9897132_9897472 chr2L_9897132_9897211 chr2L_9897032_9897131;chr2L_9897473_9897825 3.70 1.12 0.55 6.07 0.95 1.55 8.84 0.75 2.60 6.00 5.94 1.05 3.08 2.20 1.08 0.88 3.61 7.84 2.07 1.02 3.25 2.17 7.04 6.38 5.26 5.15 16.28 3.70 37.50 NA 10.62 NA 5.41 4.93 9.52 NA 1.34 2.44 4.03 10.34 10.00 0.45 2.78 17.65 0.25 11.11 1.03 4.76 3.17 8.75 NA 8.33 1.39 11.86 1.10 8.93 11.29 3.57 K intron_retention RhoGAP18B chrX - chrX_19047302_19047377 chrX_19047301_19047302;chrX_19047377_19047378 chrX_19047061_19047301;chrX_19047378_19047520 88.52 88.24 82.61 90.85 90.10 88.79 84.47 92.40 89.63 86.23 86.18 88.74 91.46 90.29 85.92 90.14 83.65 73.21 87.90 88.93 84.91 81.50 90.34 91.90 92.91 98.57 94.81 91.08 92.83 91.30 87.61 88.44 90.02 86.90 90.64 90.26 80.00 83.63 86.81 81.47 93.53 88.80 90.22 82.66 76.77 87.66 85.29 84.01 88.84 90.73 90.67 81.69 88.52 90.38 87.77 79.90 87.16 83.52 K alternative_donor CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4840394;chr3R_4839215_4840474 chr3R_4839215_4840589 chr3R_4839038_4839214;chr3R_4840590_4840610 11.80 10.00 36.36 33.33 28.57 11.11 0.00 19.05 26.67 16.67 30.77 26.67 45.45 23.08 33.33 5.88 27.27 27.27 9.09 23.08 27.27 4.17 9.09 20.00 NA 35.71 8.33 18.18 0.00 0.00 7.14 22.22 5.88 35.29 12.50 0.00 7.69 16.67 NA 11.11 7.69 43.75 23.08 0.00 43.75 0.00 0.00 8.33 37.04 10.00 9.09 10.00 11.11 NA 20.00 10.00 11.11 0.00 K intron_retention CG8449,RI_chr3R_9096143_9096213,RI_chr3R_9096632_9096844 chr3R - chr3R_9096153_9096213 chr3R_9096152_9096153;chr3R_9096213_9096214 chr3R_9096084_9096152;chr3R_9096214_9096281 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 9.68 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention E_chr2L_20647810_20648188,CG2614 chr2L + chr2L_20658602_20658668 chr2L_20658601_20658602;chr2L_20658668_20658669 chr2L_20658462_20658601;chr2L_20658669_20659220 0.00 1.61 0.00 12.24 0.00 0.00 0.00 0.00 1.28 0.00 0.00 2.27 0.00 4.76 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 5.26 0.00 0.00 4.44 2.56 0.00 0.00 0.00 0.00 0.00 0.00 4.88 0.00 0.00 0.00 1.04 3.57 1.41 5.26 0.00 0.00 0.00 0.00 4.44 2.88 1.33 1.27 0.00 0.00 1.96 0.00 0.00 1.18 2.78 K intron_retention CG7837 chr3R - chr3R_25622473_25622530 chr3R_25622472_25622473;chr3R_25622530_25622531 chr3R_25621410_25622472;chr3R_25622531_25622606 0.00 0.00 0.00 6.67 NA 0.00 3.85 0.00 0.00 NA NA 0.00 0.00 NA 0.00 4.35 0.00 0.00 NA 6.06 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 5.00 0.00 0.00 K intron_retention cni,RI_chr2L_16309575_16309999,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16310144_16310266 chr2L_16310143_16310144;chr2L_16310266_16310267 chr2L_16310000_16310143;chr2L_16310267_16310379 2.02 3.23 2.34 4.48 0.00 1.11 2.81 2.23 2.58 1.96 0.81 2.53 0.00 2.27 0.94 1.88 4.26 1.75 3.51 1.24 2.02 4.41 1.31 1.53 0.00 1.10 1.80 3.64 3.64 1.59 3.09 0.00 0.00 1.89 0.00 0.00 3.64 2.25 1.41 3.65 0.00 2.84 2.90 1.77 0.00 2.61 2.03 0.00 2.17 0.91 2.67 2.59 2.11 2.61 2.31 5.30 0.00 0.00 K alternative_donor I_chr3R_23069667_23070365,CG5987 chr3R - chr3R_23074201_23074263 chr3R_23074201_23074259 chr3R_23074073_23074200;chr3R_23074264_23074804 0.00 NA 0.00 2.53 NA NA NA 2.94 0.00 NA NA NA NA NA NA 1.79 NA NA NA 0.00 NA 0.00 0.00 NA NA NA 6.67 NA 0.00 4.35 NA 2.38 0.00 NA 0.00 NA 0.00 NA 5.56 2.94 0.00 3.85 NA NA 3.45 0.00 4.76 0.00 0.00 6.45 NA NA NA 0.00 0.00 0.00 4.76 1.59 K intron_retention RI_chr2R_9104206_9104265,Fsn,CG4663 chr2R - chr2R_9108882_9108944 chr2R_9108881_9108882;chr2R_9108944_9108945 chr2R_9108444_9108881;chr2R_9108945_9109309 0.00 NA 0.00 10.17 0.00 3.85 0.00 7.14 3.57 0.00 0.00 4.00 0.00 0.00 0.00 2.38 0.00 0.00 4.76 5.26 0.00 2.50 6.06 1.59 0.00 0.00 10.94 26.09 14.81 0.00 5.88 0.00 2.70 0.00 0.00 15.79 0.00 NA 2.60 5.77 7.69 1.79 5.56 0.00 0.00 10.00 0.00 0.00 2.33 4.17 0.00 0.00 0.00 2.63 0.00 0.00 0.00 6.67 K cassette l(1)G0269,I_chrX_21192541_21192931 chrX - chrX_21192541_21192931 chrX_21192541_21192663;chrX_21192847_21192931 chrX_21192664_21192846 chrX_21192441_21192540;chrX_21192932_21193031 98.82 100.00 100.00 96.26 93.59 98.75 96.59 98.45 97.30 98.82 97.30 98.85 100.00 98.61 98.97 100.00 100.00 100.00 98.75 99.54 94.37 99.04 97.73 99.02 100.00 93.06 98.85 98.28 97.73 96.55 97.67 100.00 99.31 99.24 98.59 98.81 100.00 99.00 98.32 99.44 97.37 98.27 98.53 100.00 99.09 99.21 98.72 99.46 99.42 98.21 99.04 96.67 98.97 98.44 97.85 97.22 100.00 100.00 K jcn_only_AD RpL30,I_chr2L_19008540_19008948,REI_chr2L_19008544_19008723,I_chr2L_19008544_19008918,snoRNA:Me28S-A2113 chr2L - chr2L_19008544_19008723;chr2L_19008544_19008918 chr2L_19008544_19008948 chr2L_19008444_19008543;chr2L_19008949_19009018 98.25 98.78 98.97 98.73 98.65 99.04 98.81 98.88 98.71 97.90 98.55 98.70 99.00 98.86 98.74 98.19 99.20 98.64 99.04 98.34 98.42 91.90 97.67 97.75 97.73 98.77 98.20 97.39 97.71 97.93 93.86 97.63 97.88 98.66 98.27 98.10 98.04 98.14 98.18 97.30 98.34 98.95 98.67 97.92 98.45 98.22 97.87 97.89 97.69 97.41 97.12 97.85 98.44 98.13 98.57 97.75 98.25 98.51 K intron_retention Stat92E,RE_chr3R_16362268_16362911,att-ORFB chr3R - chr3R_16362268_16362915 chr3R_16362267_16362268;chr3R_16362915_16362916 chr3R_16362168_16362267;chr3R_16362916_16363011 0.00 0.00 0.00 0.87 0.00 0.00 1.59 0.71 1.45 0.00 0.00 0.93 0.00 0.00 0.00 0.36 0.00 0.00 0.51 1.92 0.00 0.00 0.65 0.86 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 1.31 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 K intron_retention I_chrX_1757755_1757801,RI_chrX_1770945_1771037,CG14818,RI_chrX_1773382_1773444,trr,I_chrX_1793073_1794406,RI_chrX_1795648_1795745 chrX - chrX_1773384_1773444 chrX_1773383_1773384;chrX_1773444_1773445 chrX_1773011_1773383;chrX_1773445_1773544 0.00 0.00 0.95 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.45 0.00 1.39 1.69 1.03 0.00 4.82 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.69 0.00 0.00 0.00 2.74 0.32 0.00 0.00 0.00 0.80 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.57 0.82 0.00 1.06 K jcn_only_AD CG7530,I_chr3R_10556352_10557136,eff chr3R - chr3R_10556352_10557105;chr3R_10556352_10557130;chr3R_10556352_10557148;chr3R_10556352_10557126 chr3R_10556352_10557198 chr3R_10556252_10556351;chr3R_10557199_10557231 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.49 1.27 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.37 K intron_retention CG31612,E_chr2L_21775447_21821182 chr2L - chr2L_21762900_21765962 chr2L_21762899_21762900;chr2L_21765962_21765963 chr2L_21762314_21762899;chr2L_21765963_21766157 0.00 NA NA 21.43 NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 6.67 NA 0.00 NA NA NA NA NA NA NA K alternative_acceptor sec23,I_chr3R_1474873_1475080,I_chr3R_1474899_1475080,I_chr3R_1474960_1475051,I_chr3R_1477727_1478102 chr3R + chr3R_1474899_1475093 chr3R_1474899_1475080 chr3R_1474877_1474898;chr3R_1475094_1475151 89.06 76.00 95.00 95.45 94.74 88.89 81.08 88.89 89.06 95.00 94.74 83.72 81.82 95.00 96.15 70.27 92.86 85.00 85.19 81.40 88.89 65.62 86.21 83.33 95.24 87.50 96.30 83.87 96.55 55.56 96.43 80.00 60.98 89.74 94.44 94.12 84.00 90.48 78.26 75.00 93.75 87.04 78.95 100.00 92.86 100.00 95.45 91.67 84.44 83.78 92.86 90.00 91.30 85.71 89.66 100.00 88.64 90.48 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2395659 chrX_2388671_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2395659 chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664 chrX_2388641_2388670;chrX_2395660_2395759 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Yippee,RI_chrX_13280465_13280617 chrX - chrX_13280465_13280621 chrX_13280465_13280617 chrX_13280365_13280464;chrX_13280622_13280717 0.55 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.10 5.88 2.86 2.22 0.00 0.00 3.85 0.00 0.00 0.00 1.45 1.33 3.49 2.44 1.92 1.85 5.13 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 1.25 0.00 1.23 2.94 2.17 0.00 0.00 1.75 2.56 1.30 1.69 1.64 2.50 0.00 1.61 0.00 1.59 1.96 0.00 K intron_retention Tango1,I_chr2L_6652445_6652752,I_chr2L_6652699_6652752 chr2L + chr2L_6652630_6652752 chr2L_6652629_6652630;chr2L_6652752_6652753 chr2L_6652599_6652629;chr2L_6652753_6652852 1.30 1.56 0.00 0.00 0.00 0.00 1.98 3.45 2.03 2.44 0.00 2.21 3.12 1.32 1.32 0.00 0.00 0.00 1.30 1.58 0.00 1.32 4.85 2.56 0.00 0.00 3.85 2.38 1.14 2.94 1.09 0.00 2.67 2.00 0.00 0.00 2.70 0.00 1.47 5.00 1.22 2.92 0.00 2.47 1.33 0.82 2.50 1.05 0.00 1.41 1.39 0.00 0.00 0.00 0.00 2.27 1.06 0.00 K intron_retention CG32016,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_978690_978914 chr4_978689_978690;chr4_978914_978915 chr4_978632_978689;chr4_978915_978920 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA 100.00 NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA NA K intron_retention sno chrX - chrX_13094938_13097742 chrX_13094937_13094938;chrX_13097742_13097743 chrX_13094500_13094937;chrX_13097743_13098183 0.00 0.00 0.00 4.88 0.00 3.57 8.00 4.08 0.00 0.00 0.00 4.44 0.00 0.00 2.94 0.00 0.00 0.00 0.00 14.71 8.33 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 6.90 NA 0.00 0.00 0.00 8.33 0.00 4.17 0.00 12.00 NA 1.92 0.00 7.41 NA NA NA 5.56 3.23 0.00 3.03 4.35 NA NA 5.00 NA NA NA K jcn_only_AD E(bx),I_chr3L_236428_236553,RI_chr3L_236428_236858,RI_chr3L_236451_239054,RI_chr3L_236508_236862,I_chr3L_239004_239054,I_chr3L_239186_239264,I_chr3L_246324_246699 chr3L - chr3L_236428_236553;chr3L_236428_236858;chr3L_236428_236862 chr3L_236428_239054 chr3L_236408_236427 84.21 90.38 88.89 83.56 85.19 89.29 75.51 85.37 87.13 70.83 77.78 78.57 79.17 82.50 92.31 86.79 78.12 78.95 89.80 82.30 81.82 59.26 84.21 87.50 89.66 84.00 93.33 90.32 85.00 84.21 61.54 88.00 86.27 82.56 80.49 70.00 90.57 86.96 97.06 89.47 NA 73.91 75.00 77.78 87.50 71.88 86.21 74.55 74.73 79.31 81.97 93.75 88.89 100.00 85.71 83.33 88.89 73.08 K intron_retention CG13550 chr2R + chr2R_19255948_19256004 chr2R_19255947_19255948;chr2R_19256004_19256005 chr2R_19254380_19255947;chr2R_19256005_19259011 0.00 14.29 0.00 14.29 NA 0.00 2.70 0.00 8.89 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 28.57 0.00 11.54 16.67 0.00 6.67 0.00 0.00 0.00 0.00 0.00 4.35 2.86 NA 0.00 0.00 9.09 2.56 0.00 0.00 0.00 8.33 0.00 0.00 5.13 0.00 0.00 0.00 NA NA 0.00 NA 0.00 3.12 K jcn_only_AA Pink1,F_chrX_6578108_6578160,F_chrX_6578108_6578165,F_chrX_6578108_6578251,I_chrX_6578115_6578251 chrX + chrX_6578104_6578160;chrX_6578104_6578251 chrX_6578104_6578165 chrX_6578015_6578103;chrX_6578252_6578260 4.76 NA NA NA NA NA NA NA 3.85 NA NA 0.00 NA NA NA 23.81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.76 NA 15.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG10990,noncoding_23570 chrX - chrX_13646061_13649285 chrX_13646061_13648862 chrX_13644619_13646060;chrX_13649286_13649418 97.83 98.50 97.47 94.79 99.01 99.28 97.19 97.83 97.95 98.82 97.42 97.33 95.50 97.06 95.48 96.08 96.86 98.33 97.11 96.55 96.88 98.48 96.92 98.28 100.00 95.67 98.67 100.00 95.45 98.17 96.86 98.55 99.18 97.16 96.45 99.26 98.00 98.95 96.81 99.41 98.94 95.03 97.67 99.03 98.27 98.85 98.03 98.19 95.25 99.02 95.16 97.14 97.50 100.00 97.66 98.55 95.65 98.72 K intron_retention spin,I_chr2R_12013288_12013847 chr2R + chr2R_12023631_12023691 chr2R_12023630_12023631;chr2R_12023691_12023692 chr2R_12023532_12023630;chr2R_12023692_12023865 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 1.67 1.41 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention coro,I_chr2R_2754447_2755071 chr2R - chr2R_2751039_2751782 chr2R_2751038_2751039;chr2R_2751782_2751783 chr2R_2750853_2751038;chr2R_2751783_2752076 1.43 2.21 0.76 2.29 1.00 0.83 2.34 1.33 1.83 0.00 4.55 0.97 0.00 1.03 2.17 0.84 2.78 0.00 0.93 2.67 1.00 27.27 1.65 2.81 3.25 1.09 3.09 0.00 0.00 0.95 0.73 1.19 1.43 2.26 0.79 1.63 1.94 2.23 1.35 1.06 2.20 1.82 1.27 3.23 1.43 2.45 1.32 1.52 2.25 3.05 2.33 1.01 0.00 1.36 2.01 2.72 0.81 0.00 K intron_retention CG33691_CG33692,CG33691,noncoding_22320 chrX + chrX_6766955_6768354 chrX_6766954_6766955;chrX_6768354_6768355 chrX_6766749_6766954;chrX_6768355_6768589 44.00 38.46 50.00 91.67 NA 45.45 92.86 51.85 44.12 NA 20.00 57.89 91.67 63.64 38.10 60.87 NA 40.00 38.46 53.57 21.43 NA 18.18 40.00 NA NA 31.25 NA NA NA 45.45 53.85 59.09 65.00 NA NA 45.45 11.76 43.75 47.83 NA 44.00 NA 16.67 NA 36.84 20.00 64.29 53.85 30.77 33.33 NA NA 20.00 33.33 33.33 38.46 47.06 N alternative_donor Spase12 chr3R - chr3R_25316476_25316531 chr3R_25316476_25316527 chr3R_25316407_25316475;chr3R_25316532_25316612 1.57 2.19 1.29 1.36 2.32 0.47 0.89 0.48 1.18 2.65 1.08 0.88 0.68 1.16 0.69 0.98 1.00 0.79 0.67 1.11 0.76 1.89 3.76 2.32 4.71 1.80 4.18 4.91 12.03 1.58 0.55 1.96 1.54 0.98 2.33 2.66 2.42 3.66 1.89 1.37 6.17 1.21 1.16 1.64 1.80 3.14 1.45 3.42 0.71 2.68 3.10 1.05 2.35 1.38 0.37 2.07 2.02 1.57 K intron_retention Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2362674 chr2L_2361585_2361586;chr2L_2362674_2362675 chr2L_2361486_2361585;chr2L_2362675_2362690 12.50 NA NA 23.53 NA NA NA 18.75 15.38 NA NA 0.00 NA NA NA 0.00 NA NA 14.29 12.50 NA NA 5.56 NA NA NA NA NA NA NA NA NA NA 15.79 7.14 NA 7.14 NA NA NA NA 9.09 NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA K alternative_acceptor Imp,I_chrX_10699490_10700695,RI_chrX_10699665_10700501,RI_chrX_10699665_10700695 chrX - chrX_10699547_10700501;chrX_10699503_10700501 chrX_10699665_10700501 chrX_10700502_10700547;chrX_10699299_10699502 54.77 40.00 58.33 46.67 NA 40.00 78.26 53.57 73.08 NA 40.00 46.15 60.00 64.29 50.00 60.61 42.86 58.33 41.18 45.00 71.43 43.75 38.46 NA NA 60.00 83.33 57.14 NA 37.50 66.67 NA 75.00 51.72 66.67 71.43 NA NA NA 33.33 NA 40.00 61.54 75.00 NA 60.00 NA 55.00 50.00 NA NA NA NA NA 54.55 NA NA 41.67 K intron_retention CAH2 chr3L + chr3L_12173256_12174775 chr3L_12173255_12173256;chr3L_12174775_12174776 chr3L_12172921_12173255;chr3L_12174776_12175248 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention cora,I_chr2R_15125277_15130573,I_chr2R_15125940_15130208,I_chr2R_15129291_15129988 chr2R + chr2R_15129291_15129678 chr2R_15129290_15129291;chr2R_15129678_15129679 chr2R_15129191_15129290;chr2R_15129679_15129900 0.45 0.48 0.73 0.46 0.65 0.21 0.86 0.50 0.74 0.39 0.37 1.13 0.79 0.53 0.66 1.36 0.72 0.36 0.25 0.35 0.39 0.38 0.69 0.42 0.29 1.01 0.70 0.94 0.18 0.00 0.46 0.22 0.21 0.55 0.40 0.44 0.54 0.23 0.36 0.57 0.25 0.56 0.53 0.25 0.24 0.24 0.00 0.36 0.62 0.52 0.22 0.47 0.41 0.13 0.96 0.51 0.45 0.29 K jcn_only_AD Nedd4,I_chr3L_17526753_17527450,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17526753_17527450;chr3L_17526950_17527450 chr3L_17526749_17527450 chr3L_17527451_17527550;chr3L_17526708_17526748 67.80 NA 66.67 70.37 NA 57.14 62.96 73.53 56.86 NA NA 61.54 65.22 NA 95.24 67.74 NA 66.67 77.78 76.92 50.00 NA 68.29 NA 66.67 67.86 61.90 NA 60.00 NA 68.00 NA NA 56.76 NA NA NA NA 66.67 NA NA 72.41 90.00 55.00 NA 79.17 NA 76.47 80.70 NA 74.07 64.00 NA NA 82.14 NA NA 78.26 K alternative_last_exon I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10068715,I_chr2R_10067437_10068984,I_chr2R_10068194_10068715 chr2R + chr2R_10067437_10068715 chr2R_10067437_10067926 chr2R_10068716_10070345 chr2R_10067927_10068324 chr2R_10067337_10067436 2.17 3.77 2.04 4.83 3.12 2.56 3.12 3.07 2.13 1.23 1.89 4.64 1.43 4.71 2.13 2.86 1.27 3.96 0.99 2.70 4.41 2.29 2.25 2.16 2.50 1.32 4.10 8.11 0.99 1.85 3.45 1.27 3.00 2.34 0.95 5.05 2.41 0.96 1.32 2.07 1.96 2.17 1.28 1.72 0.51 1.90 2.13 1.39 2.51 0.79 4.05 3.33 2.50 1.61 2.75 1.43 1.50 3.22 K intron_retention pigeon chr2L + chr2L_19188532_19188590 chr2L_19188531_19188532;chr2L_19188590_19188591 chr2L_19188299_19188531;chr2L_19188591_19188805 0.00 NA NA 40.00 NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA 0.00 9.09 NA NA 12.50 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K jcn_only_AD CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4839655;chr3R_4839215_4839851;chr3R_4839215_4839728;chr3R_4839215_4839889;chr3R_4839215_4839799 chr3R_4839215_4839561 chr3R_4839038_4839214;chr3R_4839890_4839901 60.00 61.90 63.64 56.67 NA NA NA 63.33 51.16 NA NA 59.09 NA NA NA NA NA NA 64.00 30.00 NA 86.67 66.67 NA NA 40.91 76.00 NA NA NA NA NA NA 50.00 NA NA NA NA NA 60.00 NA 48.57 NA 65.00 NA 54.55 NA NA 51.28 39.13 NA NA NA NA NA NA 63.33 77.27 K intron_retention CLIP-190,I_chr2L_17394493_17404060,I_chr2L_17401291_17404060,I_chr2L_17401582_17402303 chr2L + chr2L_17384840_17385225 chr2L_17384839_17384840;chr2L_17385225_17385226 chr2L_17384808_17384839;chr2L_17385226_17385440 90.91 88.89 88.89 94.74 NA NA 91.67 93.33 95.83 NA NA 94.44 88.89 83.33 76.92 88.00 90.91 NA 85.71 80.00 88.89 NA 88.89 NA NA 100.00 NA NA NA NA 90.91 NA NA 91.30 100.00 NA NA NA NA 100.00 NA 93.33 90.91 NA NA NA NA 72.73 90.48 NA 90.91 NA NA NA 75.00 NA NA NA K jcn_only_AA CG8726 chr2R - chr2R_3859035_3859141 chr2R_3859070_3859141 chr2R_3859142_3859511;chr2R_3858749_3859034 6.82 7.14 2.13 6.45 5.13 8.89 5.13 1.96 5.88 8.82 3.03 4.35 2.63 0.00 10.42 7.14 5.26 0.00 16.67 2.63 4.88 16.67 9.01 4.05 7.50 2.86 7.14 0.00 14.04 10.14 5.00 4.00 3.03 9.84 6.82 0.00 8.00 6.56 9.59 7.92 11.54 3.16 9.09 11.76 16.33 4.88 11.63 18.00 8.43 6.25 9.52 4.76 10.00 14.71 5.66 4.76 7.14 8.33 K jcn_only_AA Dscam,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3251271_3255892;chr2R_3254472_3255892;chr2R_3253610_3255892;chr2R_3252685_3255892;chr2R_3251854_3255892;chr2R_3252399_3255892;chr2R_3250996_3255892;chr2R_3254133_3255892;chr2R_3252123_3255892;chr2R_3252988_3255892 chr2R_3250700_3255892 chr2R_3255893_3255920 11.63 15.15 10.26 4.76 21.88 14.29 7.41 9.76 14.29 NA NA 12.99 NA 20.83 9.30 20.00 9.52 NA 9.09 8.89 15.62 8.00 15.38 12.82 18.42 6.67 6.12 12.50 11.63 11.63 11.11 NA 12.73 2.17 23.08 3.85 6.06 12.90 6.15 11.94 NA 9.80 25.00 15.38 NA 13.04 7.41 8.82 16.67 10.00 13.64 8.70 NA NA 4.00 17.39 17.39 NA K intron_retention CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20346714_20347206 chr3L_20346713_20346714;chr3L_20347206_20347207 chr3L_20346638_20346713;chr3L_20347207_20347505 100.00 NA 100.00 NA NA NA NA 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA 88.89 NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA 90.91 NA NA NA K intron_retention CG5941,E_chrX_5932158_5932432 chrX + chrX_5932227_5932295 chrX_5932226_5932227;chrX_5932295_5932296 chrX_5932074_5932226;chrX_5932296_5932598 1.94 0.00 0.00 3.54 0.00 0.00 4.80 2.13 1.89 1.94 3.08 1.24 0.00 2.27 2.02 3.54 0.00 0.00 0.97 2.03 0.00 13.70 3.05 1.54 5.43 2.35 11.11 8.82 17.39 0.96 9.09 2.78 0.00 0.00 2.86 1.27 1.23 0.00 1.86 3.97 7.14 2.02 0.00 1.27 3.54 2.50 0.00 5.56 3.37 0.80 0.00 0.00 1.94 4.88 0.79 0.00 0.99 2.65 K intron_retention RpL13A,I_chr3R_1450243_1451235,EI_chr3R_1450853_1451054,snoRNA:Me28S-U2134b,snoRNA:Me28S-U2134a chr3R + chr3R_1450853_1451054 chr3R_1450852_1450853;chr3R_1451054_1451055 chr3R_1450753_1450852;chr3R_1451055_1451154 8.57 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 21.43 10.53 NA NA NA NA NA NA 0.00 NA NA NA NA 10.00 NA NA NA NA 0.00 NA NA 6.67 NA 13.33 NA NA 7.14 NA NA 25.00 0.00 K alternative_acceptor CG9740,RI_chr3R_5083859_5083977,I_chr3R_5083907_5083977 chr3R - chr3R_5083859_5083977;chr3R_5083911_5083977 chr3R_5083907_5083977 chr3R_5083978_5084077;chr3R_5083807_5083858 0.00 0.00 0.00 0.00 10.00 8.33 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 2.70 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 7.14 13.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette PP2A-B' chr3R + chr3R_13993929_13995378;chr3R_13993590_13995378 chr3R_13993929_13995205,chr3R_13993590_13995205;chr3R_13995271_13995378 chr3R_13995206_13995270 chr3R_13993510_13993589;chr3R_13995379_13995820 68.75 50.00 NA 90.91 NA 62.50 65.00 68.75 70.83 NA NA 78.95 85.71 73.33 60.00 82.61 50.00 NA 77.78 84.21 NA 50.00 NA 53.85 50.00 75.00 NA NA NA NA 80.00 NA 71.43 84.62 NA NA NA NA NA 66.67 NA 68.75 81.82 37.50 NA NA NA 63.64 65.00 28.57 87.50 50.00 NA NA 64.29 NA NA NA K jcn_only_AD Ubi-p5E,E_chrX_6171360_6172728,E_chrX_6171636_6173159,E_chrX_6172320_6173159,I_chrX_6172787_6172907 chrX - chrX_6172787_6173168 chrX_6172787_6172907 chrX_6172734_6172786;chrX_6173169_6173259 0.00 0.00 0.00 0.13 0.00 0.00 0.17 0.00 0.35 0.00 0.00 0.15 0.00 0.26 0.26 0.11 0.00 0.33 0.25 0.00 0.00 0.00 0.15 0.00 0.00 0.27 0.00 0.31 0.47 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.17 0.00 0.00 0.15 0.00 0.13 0.00 0.15 0.42 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045277_16046104 chr3L_16045276_16045277;chr3L_16046104_16046105 chr3L_16045216_16045276;chr3L_16046105_16046204 90.45 88.89 NA 92.31 NA NA 88.89 87.50 90.00 NA NA 92.31 91.67 100.00 90.00 88.89 80.00 88.89 92.86 87.50 NA 100.00 92.86 87.50 NA 92.86 90.91 100.00 88.89 80.00 84.62 NA 94.12 95.24 NA 100.00 NA NA NA 100.00 NA 86.36 100.00 91.67 NA NA NA 86.67 95.24 NA 90.00 NA NA NA 81.25 NA NA NA K alternative_acceptor sgg,I_chrX_2528059_2528637,I_chrX_2528131_2535622,RI_chrX_2528212_2535830,I_chrX_2528367_2535622,I_chrX_2528472_2535622,I_chrX_2529065_2563945,I_chrX_2536127_2563666,I_chrX_2563342_2563666,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2528212_2535830 chrX_2528212_2535622 chrX_2528171_2528211;chrX_2535831_2535930 100.00 100.00 94.29 98.04 100.00 100.00 97.96 98.48 100.00 93.75 100.00 97.78 100.00 100.00 94.44 97.96 100.00 96.43 97.56 97.73 100.00 100.00 100.00 100.00 100.00 93.55 93.33 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 92.31 100.00 100.00 96.00 92.31 100.00 100.00 93.75 98.41 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor fon,I_chr2L_19385355_19385669,E_chr2L_19385377_19386086,CE_chr2L_19385715_19386086,I_chr2L_19388570_19389922 chr2L - chr2L_19385355_19385669 chr2L_19385364_19385669 chr2L_19385670_19385704;chr2L_19385277_19385354 100.00 90.91 100.00 100.00 NA 90.91 100.00 100.00 100.00 100.00 NA 95.65 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA 95.65 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 94.12 95.83 88.89 100.00 100.00 100.00 100.00 95.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 K jcn_only_AA Fps85D,I_chr3R_5194729_5194776,I_chr3R_5216796_5218450 chr3R - chr3R_5195433_5198477;chr3R_5198303_5198477 chr3R_5198300_5198477 chr3R_5198478_5198655 0.88 0.85 0.00 0.58 0.00 0.00 1.47 1.20 0.89 0.00 0.00 0.00 1.20 0.00 0.82 0.00 0.00 0.88 0.00 1.40 0.00 3.08 2.76 0.00 4.11 0.93 0.00 4.88 2.06 0.90 1.52 2.15 1.79 0.00 2.27 1.98 0.78 0.00 0.00 1.34 0.00 0.48 0.00 0.00 3.33 0.00 1.30 1.38 0.44 1.11 0.76 1.54 1.54 1.41 0.00 1.03 2.11 1.03 K alternative_donor CG31731,I_chr2L_13786850_13786922 chr2L + chr2L_13786850_13786922 chr2L_13786860_13786922 chr2L_13786923_13787022;chr2L_13786750_13786849 96.15 89.29 96.97 98.21 95.83 96.67 93.62 92.06 94.59 93.75 96.77 96.55 96.00 97.06 95.45 93.55 96.97 93.33 100.00 94.87 96.43 91.30 92.50 100.00 96.15 97.37 96.97 92.31 100.00 96.67 82.69 87.50 92.11 91.80 95.00 97.14 97.44 93.75 93.62 95.77 95.00 97.01 96.30 97.30 100.00 97.30 94.12 98.00 94.12 96.15 97.96 100.00 92.31 100.00 97.50 89.47 100.00 90.32 N intron_retention RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817,snoRNA:Psi28S-2444 chr2R + chr2R_15330604_15330836 chr2R_15330603_15330604;chr2R_15330836_15330837 chr2R_15330318_15330603;chr2R_15330837_15330917 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention I_chr2L_12099367_12099435,Aats-thr chr2L + chr2L_12105122_12105175 chr2L_12105121_12105122;chr2L_12105175_12105176 chr2L_12104688_12105121;chr2L_12105176_12106918 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Plip chr3R + chr3R_19584251_19584496 chr3R_19584250_19584251;chr3R_19584496_19584497 chr3R_19584040_19584250;chr3R_19584497_19584640 0.00 5.41 0.00 4.44 0.00 7.41 0.00 4.44 3.85 0.00 0.00 0.00 0.00 8.00 2.63 2.86 0.00 0.00 8.33 3.61 3.45 0.00 3.57 3.33 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 2.53 0.00 3.17 0.00 5.26 3.33 3.39 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 3.45 4.26 2.17 0.00 K intron_retention l(2)k01209,RI_chr2R_13310877_13311160 chr2R + chr2R_13312265_13312323 chr2R_13312264_13312265;chr2R_13312323_13312324 chr2R_13312078_13312264;chr2R_13312324_13312917 4.31 4.21 7.32 6.52 6.35 0.00 7.14 3.37 3.59 5.36 3.03 2.86 0.00 2.70 6.58 5.75 3.57 7.81 3.70 6.37 5.36 20.00 5.56 3.33 7.69 2.78 5.23 5.68 7.94 4.90 6.48 4.23 6.60 3.60 5.15 8.65 4.46 5.56 4.64 3.90 2.38 4.73 3.12 2.67 3.23 1.77 3.03 1.28 1.54 5.32 4.24 4.35 0.00 4.31 1.09 5.30 1.68 0.00 K jcn_only_AD CG42568,RI_chr2R_20046540_20046671,RI_chr2R_20046609_20046675,RI_chr2R_20046743_20046821 chr2R - chr2R_20046609_20046675;chr2R_20046609_20046671 chr2R_20046609_20046667 chr2R_20046509_20046608;chr2R_20046676_20046742 32.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 32.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention LanA,I_chr3L_6208090_6208194 chr3L - chr3L_6208112_6208194 chr3L_6208111_6208112;chr3L_6208194_6208195 chr3L_6207902_6208111;chr3L_6208195_6208294 0.00 0.31 0.35 0.35 0.23 0.00 0.08 0.00 0.22 0.00 0.24 0.21 0.25 0.21 0.00 0.36 0.11 0.36 0.00 0.17 0.48 0.00 0.00 0.00 0.39 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.06 0.00 0.45 0.26 0.00 0.00 0.00 0.00 0.22 0.14 0.00 0.00 0.00 0.00 0.45 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817 chr2R + chr2R_15329995_15330122 chr2R_15330062_15330122 chr2R_15330123_15330245;chr2R_15329948_15329994 0.32 0.00 1.05 0.29 0.00 0.35 0.57 0.36 0.08 0.43 0.33 0.31 0.98 1.40 0.88 0.25 0.95 2.19 1.46 0.20 1.31 0.18 0.41 0.26 0.33 2.91 0.19 0.06 0.59 0.18 18.08 0.27 0.29 0.29 0.42 0.09 0.07 0.14 0.18 0.32 0.89 0.27 3.16 0.22 0.27 0.58 0.28 0.63 0.39 0.32 0.44 0.14 0.20 0.39 0.93 0.17 0.14 0.64 K alternative_donor CG12753,CG14894,RI_chr3R_12268071_12268135,RI_chr3R_12268071_12268141,RI_chr3R_12268071_12268661,Pak3 chr3R - chr3R_12268071_12268661;chr3R_12268071_12268124;chr3R_12268071_12268141;chr3R_12268071_12268135 chr3R_12268071_12268145 chr3R_12267971_12268070;chr3R_12268662_12268688 3.17 5.00 3.51 2.63 2.17 3.92 1.64 1.41 2.73 3.45 10.87 3.33 2.78 2.22 10.29 3.08 5.00 3.51 3.92 4.10 6.38 1.52 2.67 3.75 2.33 1.75 10.34 9.68 3.17 3.77 4.17 1.20 5.88 2.67 3.85 15.52 3.85 3.45 1.41 1.96 2.60 2.65 4.55 5.66 1.87 2.70 2.17 2.17 3.16 2.08 5.56 2.38 1.35 5.88 3.12 3.80 4.29 1.90 K cassette CG11870,I_chr3R_6124314_6124732 chr3R + chr3R_6120041_6122455 chr3R_6120041_6121042;chr3R_6121784_6122455 chr3R_6121043_6121783 chr3R_6118916_6120040;chr3R_6122456_6122831 5.00 4.35 7.41 3.85 6.25 0.00 4.17 4.00 8.11 4.76 6.67 7.41 NA 5.00 5.00 10.00 0.00 7.69 5.00 5.71 NA 11.76 5.71 4.88 4.00 5.00 4.76 9.52 13.04 3.85 7.14 4.17 5.26 4.55 4.17 4.35 5.71 6.90 4.55 4.76 3.45 4.65 0.00 7.14 6.25 3.57 4.76 7.69 2.50 4.35 2.63 5.56 5.88 5.56 0.00 5.88 6.67 4.35 K intron_retention CG3437,CG3434 chr3L - chr3L_9450636_9450693 chr3L_9450635_9450636;chr3L_9450693_9450694 chr3L_9450462_9450635;chr3L_9450694_9450733 12.50 NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention stj chr2R + chr2R_9697175_9697418 chr2R_9697174_9697175;chr2R_9697418_9697419 chr2R_9696883_9697174;chr2R_9697419_9697868 0.00 0.00 0.00 6.25 0.00 5.56 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 5.56 2.38 0.00 2.17 2.68 0.00 0.00 0.00 0.00 0.00 1.25 5.06 6.67 0.00 0.00 0.00 11.11 5.00 2.50 0.00 0.00 0.00 0.00 1.39 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.83 3.57 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 K intron_retention REI_chr3L_1545423_1545473,I_chr3L_1545606_1545652,CG12099,CG7879 chr3L - chr3L_1556004_1556062 chr3L_1556003_1556004;chr3L_1556062_1556063 chr3L_1555341_1556003;chr3L_1556063_1556217 2.94 1.56 4.17 13.27 0.00 0.00 0.97 2.88 2.56 0.00 3.77 2.21 7.14 0.00 3.26 2.44 3.77 1.37 0.00 2.60 0.00 15.07 2.44 4.60 8.89 7.02 4.29 13.64 10.61 4.62 2.73 2.94 2.80 2.63 9.09 8.62 2.22 0.00 0.00 3.31 6.06 3.87 4.84 0.98 0.00 1.09 1.59 2.50 4.72 3.85 4.21 3.57 3.70 1.59 3.33 5.49 0.00 5.13 K intron_retention mbc,I_chr3R_19615584_19615649,I_chr3R_19625220_19625288 chr3R + chr3R_19625911_19625972 chr3R_19625910_19625911;chr3R_19625972_19625973 chr3R_19625740_19625910;chr3R_19625973_19626117 0.00 1.37 0.00 3.74 0.00 0.00 0.00 0.00 1.97 0.00 0.00 1.46 1.72 0.00 2.94 1.27 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 4.35 2.13 2.13 0.00 3.03 0.00 0.00 1.15 2.44 0.00 0.00 0.00 0.00 4.00 0.00 1.72 0.00 0.00 1.75 1.89 0.00 4.55 3.70 0.00 1.56 1.72 0.00 0.00 0.00 0.88 0.00 3.28 K alternative_acceptor CG11880,I_chr3R_24949827_24951052,CE_chr3R_24962426_24962797 chr3R + chr3R_24949827_24951129;chr3R_24949827_24951126 chr3R_24949827_24951052 chr3R_24949727_24949826;chr3R_24951130_24951152 1.16 2.56 0.00 1.28 0.00 0.00 6.25 1.45 1.20 0.00 0.00 1.49 0.00 2.08 0.00 0.00 2.56 0.00 0.00 0.00 2.86 1.75 1.96 0.00 3.03 3.17 1.85 1.54 3.03 0.00 1.20 0.00 1.65 1.61 3.12 5.66 1.37 2.17 2.22 0.98 0.00 0.00 0.00 1.37 0.00 0.00 0.00 1.16 2.41 0.00 2.17 0.00 0.00 5.00 0.00 0.00 0.00 0.00 K alternative_donor Trf4-1,I_chrX_8455293_8457185,RI_chrX_8455791_8457185,R_chrX_8455801_8457185,I_chrX_8455902_8457185,I_chrX_8459198_8459266 chrX + chrX_8454992_8457185;chrX_8454847_8457185 chrX_8455100_8457185 chrX_8457186_8457285;chrX_8454674_8454846 13.04 9.52 15.38 6.82 11.76 12.00 9.09 10.42 14.29 25.00 45.45 10.87 11.11 8.33 12.50 10.26 15.00 9.52 13.04 18.52 11.76 30.00 13.04 9.38 5.56 22.22 9.38 36.36 33.33 18.18 11.11 30.77 46.15 7.14 7.14 18.75 21.43 14.29 12.50 15.79 23.08 15.38 8.33 25.00 44.44 23.08 0.00 60.00 11.54 16.67 8.33 5.26 18.18 9.09 11.54 21.43 25.00 55.56 K alternative_donor CG5270,I_chr3R_7253146_7253201,F_chr3R_7256294_7256363 chr3R + chr3R_7253142_7253201 chr3R_7253146_7253201 chr3R_7253202_7253301;chr3R_7253046_7253141 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 2.13 NA 0.00 2.70 5.56 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 2.94 0.00 4.55 0.00 NA 4.17 NA 0.00 NA NA NA 0.00 2.22 NA 3.45 NA NA NA 0.00 0.00 0.00 NA K intron_retention CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516728_21517821 chr3L_21516727_21516728;chr3L_21517821_21517822 chr3L_21516383_21516727;chr3L_21517822_21517920 25.17 NA NA NA NA NA 27.27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.08 NA NA NA NA NA 10.53 NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.77 28.57 NA NA NA NA NA NA NA NA NA K intron_retention CG30349,lin chr2R + chr2R_4796526_4796581 chr2R_4796525_4796526;chr2R_4796581_4796582 chr2R_4796040_4796525;chr2R_4796582_4796710 0.00 0.00 0.78 1.64 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.55 0.00 0.00 1.94 1.01 0.00 1.34 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.50 0.00 0.00 1.57 1.21 0.00 0.00 0.00 0.43 0.52 0.00 0.00 0.00 0.00 1.61 0.00 0.39 K jcn_only_AD CG15134 chr2L + chr2L_16904132_16904236 chr2L_16904144_16904236 chr2L_16904237_16904401;chr2L_16902932_16904131 23.81 28.57 20.59 26.87 27.03 19.35 22.39 33.33 29.20 30.43 31.43 23.81 28.57 24.24 15.79 31.58 19.05 11.76 17.95 27.50 12.00 25.71 20.69 23.08 22.86 23.08 22.22 13.04 26.09 27.03 16.67 NA 27.59 24.29 27.59 29.41 46.00 NA 23.33 15.69 NA 27.63 13.51 26.19 NA NA 20.00 21.21 27.16 NA 15.38 NA NA NA 21.82 NA NA NA K jcn_only_AA Ptp69D,CG32112 chr3L + chr3L_12731804_12731874 chr3L_12731804_12731871 chr3L_12731560_12731803;chr3L_12731875_12732766 50.00 57.89 57.14 46.00 41.94 NA 56.72 52.00 48.78 NA 40.00 50.00 38.24 53.33 42.55 48.08 60.00 14.81 45.83 39.62 44.00 63.41 54.55 71.43 55.00 45.00 60.00 NA 48.00 53.85 48.57 NA NA 48.57 47.83 63.64 70.00 50.00 47.83 50.00 NA 52.11 44.44 56.76 NA 50.00 NA 54.84 51.47 30.00 52.94 55.56 NA NA 50.00 NA NA 52.17 K intron_retention CG12946,noncoding_15730,I_chr3R_5599701_5600032,I_chr3R_5609682_5609889 chr3R - chr3R_5599701_5600041 chr3R_5599700_5599701;chr3R_5600041_5600042 chr3R_5599601_5599700;chr3R_5600042_5600132 78.17 66.67 NA 81.82 58.33 76.92 100.00 78.57 72.00 NA NA 95.00 77.78 NA 75.00 76.92 77.78 80.00 NA 84.21 90.00 NA 69.23 72.73 88.89 90.00 80.00 NA 72.73 85.71 92.31 NA 100.00 71.43 NA 90.91 76.92 72.73 76.47 77.27 NA 76.19 NA 90.00 NA NA NA 83.33 88.89 NA 75.00 NA NA NA 88.89 72.73 NA 100.00 K jcn_only_AD CG2004,I_chrX_8608130_8608508,RI_chrX_8608147_8608508,I_chrX_8608169_8608438 chrX - chrX_8608169_8608508 chrX_8608169_8608438 chrX_8608069_8608168;chrX_8608509_8608538 4.30 0.00 4.23 4.21 2.00 7.55 6.06 3.33 3.10 10.42 8.00 1.61 0.00 4.84 8.96 2.68 2.33 3.28 9.21 0.89 3.23 6.45 2.53 4.65 1.75 5.06 6.06 6.17 12.96 7.84 3.85 5.26 1.67 5.05 1.33 1.82 4.29 4.17 0.00 4.59 0.00 3.28 5.36 3.12 4.41 4.30 6.94 12.07 3.31 4.42 6.38 4.55 4.00 5.45 6.52 4.48 4.49 1.54 K cassette Arf79F,I_chr3L_22863166_22863946,I_chr3L_22863166_22864419,RI_chr3L_22863251_22863389,RI_chr3L_22863251_22863952,I_chr3L_22863251_22864009,I_chr3L_22863251_22864188,I_chr3L_22863251_22864501,I_chr3L_22863251_22864629,RI_chr3L_22863251_22864763,I_chr3L_22863251_22864866,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22863251_22865023 chr3L_22863251_22863314;chr3L_22863395_22865023 chr3L_22863315_22863394 chr3L_22863151_22863250;chr3L_22865024_22865147 0.00 0.00 0.00 0.00 0.00 1.22 0.65 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 K intron_retention CG14657 chr3R - chr3R_645633_645832 chr3R_645632_645633;chr3R_645832_645833 chr3R_645516_645632;chr3R_645833_645870 47.22 NA NA NA NA NA 50.00 41.67 47.37 NA NA 41.67 50.00 54.55 NA NA NA NA NA 47.06 NA 23.53 NA NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA 53.33 NA 33.33 NA NA NA NA NA NA NA K jcn_only_AD CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516706_21517821;chr3L_21516330_21517821;chr3L_21516399_21517821;chr3L_21517168_21517821;chr3L_21516722_21517821;chr3L_21516918_21517821;chr3L_21516343_21517821;chr3L_21516728_21517821 chr3L_21516501_21517821 chr3L_21517822_21517920;chr3L_21516311_21516329 1.69 13.64 4.00 0.00 0.00 0.00 3.39 0.00 6.00 NA NA 2.38 NA 0.00 4.00 0.00 5.00 20.00 NA 0.00 NA 0.00 0.00 9.09 NA 0.00 4.76 NA 2.27 NA 2.56 NA 0.00 4.08 NA 0.00 7.14 0.00 NA 0.00 NA 1.69 0.00 3.03 NA 0.00 4.76 4.76 3.28 NA NA NA NA NA 0.00 NA NA 0.00 K alternative_acceptor cl chr2L + chr2L_5520236_5520301;chr2L_5520236_5520286 chr2L_5520236_5520304 chr2L_5520216_5520235;chr2L_5520305_5520545 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 NA 0.00 1.69 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA NA 0.96 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 7.69 0.00 NA 0.00 0.00 NA 0.00 0.00 K intron_retention Amun,I_chrX_11607839_11608272,I_chrX_11607842_11608105,I_chrX_11607842_11608125,RI_chrX_11607842_11608272 chrX - chrX_11607842_11608507 chrX_11607841_11607842;chrX_11608507_11608508 chrX_11607788_11607841;chrX_11608508_11608588 4.26 0.00 NA 4.55 NA NA 6.25 10.00 2.78 NA NA 7.41 NA NA 0.00 0.00 NA NA NA 8.33 NA 10.53 6.25 NA NA NA 0.00 NA 0.00 NA NA NA 0.00 4.35 NA 13.33 4.17 NA 0.00 6.67 NA 12.00 NA NA 0.00 9.52 0.00 2.70 6.25 NA NA NA NA 6.67 0.00 10.53 0.00 0.00 K jcn_only_AA Hr39,I_chr2L_21256047_21256260 chr2L + chr2L_21256047_21256945 chr2L_21256047_21256260 chr2L_21255947_21256046;chr2L_21256946_21257048 0.00 0.00 3.12 7.25 4.17 0.00 0.00 0.00 0.00 4.55 14.81 1.79 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.00 3.57 5.26 0.00 0.00 NA 9.68 3.85 0.00 0.00 2.86 2.44 NA 0.00 2.78 0.00 0.00 0.00 0.00 2.78 0.00 NA 2.94 0.00 2.86 NA 0.00 3.57 5.00 1.47 0.00 0.00 0.00 0.00 NA 3.45 0.00 NA 2.94 K alternative_donor CaMKII,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,I_chr4_1071489_1071884,RI_chr4_1071489_1071968,I_chr4_1071569_1071884,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1071675_1071884 chr4_1071675_1071813 chr4_1071575_1071674;chr4_1071885_1071899 100.00 100.00 100.00 100.00 NA NA 92.31 93.75 92.31 NA NA 100.00 87.50 88.89 100.00 93.75 100.00 100.00 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 85.71 NA 100.00 88.89 NA NA NA NA 100.00 94.12 NA NA NA NA NA 100.00 NA NA NA K intron_retention CG9684 chr3R - chr3R_4188104_4188160 chr3R_4188103_4188104;chr3R_4188160_4188161 chr3R_4187630_4188103;chr3R_4188161_4188266 0.00 0.00 6.25 12.82 0.00 2.94 0.00 0.00 2.22 0.00 0.00 4.65 NA 0.00 0.00 0.00 0.00 0.00 0.00 4.35 NA 5.26 0.00 0.00 0.00 11.76 16.67 4.35 30.43 0.00 0.00 0.00 4.00 6.25 16.67 10.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 4.44 0.00 5.13 0.00 0.00 0.00 5.71 5.56 0.00 3.70 K alternative_acceptor TMS1 chr3L + chr3L_16407594_16407920;chr3L_16407594_16407905;chr3L_16407594_16407893;chr3L_16407594_16407902 chr3L_16407594_16407914 chr3L_16407384_16407593;chr3L_16407921_16408056 27.72 30.18 24.41 38.35 27.72 25.23 41.18 22.29 25.45 34.55 26.42 31.79 27.72 25.30 28.93 19.42 20.45 29.59 24.74 29.24 26.47 25.07 30.90 28.22 28.04 15.46 31.48 16.35 29.29 25.34 30.51 30.13 26.58 25.43 27.62 26.96 31.76 25.97 31.63 27.84 26.18 27.54 22.09 28.99 24.89 27.70 26.32 28.12 29.56 32.28 29.29 20.73 35.05 30.77 27.45 27.50 27.74 34.75 K intron_retention CG15822,F_chr3L_2157814_2158246,CG15879 chr3L - chr3L_2168785_2168954 chr3L_2168784_2168785;chr3L_2168954_2168955 chr3L_2167550_2168784;chr3L_2168955_2169188 6.67 NA 0.00 30.00 NA NA 6.67 6.06 13.89 NA NA 11.54 NA 23.08 10.00 18.18 6.67 NA 0.00 9.68 NA 13.33 0.00 6.67 NA 0.00 11.76 NA NA NA 0.00 NA 0.00 13.79 NA NA NA NA 0.00 20.00 NA 11.90 6.67 NA NA 5.26 4.00 NA 15.15 NA 6.67 21.43 NA NA 4.76 NA NA NA K intron_retention CG30492,C_chr2R_3522706_3523025,RI_chr2R_3536203_3536977,I_chr2R_3543397_3543455 chr2R + chr2R_3538314_3538366 chr2R_3538313_3538314;chr2R_3538366_3538367 chr2R_3538199_3538313;chr2R_3538367_3538507 6.28 NA NA 29.41 NA NA NA NA 15.00 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 5.88 14.29 NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA 0.00 0.00 NA 11.11 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 6.67 K intron_retention YT521-B chr3L - chr3L_3373870_3374132 chr3L_3373869_3373870;chr3L_3374132_3374133 chr3L_3372970_3373869;chr3L_3374133_3374188 92.92 87.50 95.65 96.67 90.91 100.00 100.00 97.37 92.98 77.78 86.67 92.59 100.00 95.00 86.21 87.50 90.00 94.74 100.00 87.27 94.44 100.00 94.12 94.12 85.71 100.00 91.67 91.67 NA NA 79.17 NA 90.91 90.91 88.89 NA 85.71 94.44 83.33 90.91 NA 95.35 94.12 NA 93.33 NA 91.67 NA 97.56 92.86 100.00 77.78 NA NA 95.45 88.89 94.12 NA K mutually_exclusive lqf,I_chr3L_7522287_7522807 chr3L + chr3L_7528745_7529810,chr3L_7529870_7530075 chr3L_7528745_7529109,chr3L_7529536_7530075 chr3L_7529811_7529869 chr3L_7529110_7529535 chr3L_7528643_7528744;chr3L_7530076_7530479 33.33 36.36 33.33 35.29 16.67 16.67 53.33 33.33 38.46 21.43 66.67 51.72 20.00 37.50 28.57 41.18 44.44 21.43 22.22 36.00 53.33 12.50 26.09 21.05 25.00 40.00 23.53 60.00 66.67 33.33 23.33 25.00 33.33 42.11 33.33 52.94 35.29 33.33 15.79 80.00 20.00 33.33 30.00 35.00 37.50 28.57 27.78 50.00 38.10 20.00 25.00 22.22 50.00 27.27 29.41 30.77 41.67 46.67 K alternative_donor Moe,I_chrX_8774434_8791759 chrX - chrX_8785657_8785766 chrX_8785657_8785727 chrX_8785595_8785656;chrX_8785767_8785791 95.98 95.58 97.20 98.61 95.98 96.79 97.82 97.27 94.64 97.45 97.14 97.96 99.06 97.22 96.97 92.79 96.05 94.53 96.91 94.89 98.11 76.69 92.65 96.53 97.36 97.81 99.69 95.42 97.65 93.62 97.74 94.44 80.26 96.54 95.48 100.00 95.70 95.43 95.42 96.42 95.35 94.20 95.09 97.12 91.04 93.75 92.57 97.96 95.22 93.46 97.28 96.20 93.67 94.05 96.06 95.96 93.60 90.77 K alternative_acceptor foxo,RI_chr3R_9883151_9883462,I_chr3R_9907161_9907218 chr3R + chr3R_9882747_9883595 chr3R_9882747_9883462 chr3R_9882717_9882746;chr3R_9883596_9883829 91.66 NA NA NA NA NA NA NA 83.33 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD I_chr3R_23771063_23772599,CG4951,RI_chr3R_23778808_23778861 chr3R - chr3R_23778808_23778865 chr3R_23778808_23778861 chr3R_23778715_23778807;chr3R_23778866_23778961 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 1.85 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 2.22 0.00 0.00 0.00 1.15 0.00 1.52 1.47 0.56 0.00 0.00 0.00 0.84 1.23 1.41 0.76 0.83 0.70 0.00 0.00 0.67 0.62 0.71 1.56 0.00 0.00 1.06 0.00 0.00 1.27 1.20 0.00 0.00 0.32 K jcn_only_AD Cctgamma chr3R + chr3R_12473409_12473557;chr3R_12473318_12473557;chr3R_12473479_12473557;chr3R_12473424_12473557;chr3R_12473464_12473557 chr3R_12473420_12473557 chr3R_12473558_12473651;chr3R_12473311_12473317 94.32 94.66 91.43 95.81 93.07 98.33 93.87 90.10 93.99 90.70 95.00 91.14 96.67 91.74 89.81 95.36 92.86 94.32 95.88 93.15 93.81 98.56 98.06 96.12 95.16 93.06 96.97 98.96 95.00 94.44 92.17 93.33 84.13 92.62 92.75 89.83 98.60 97.30 96.23 96.83 84.85 93.55 92.05 96.39 93.65 90.24 96.51 90.38 92.35 96.46 98.46 98.85 94.12 98.39 95.28 98.15 97.87 93.22 K alternative_acceptor RanBPM chr2R + chr2R_6320709_6320779 chr2R_6320709_6320776 chr2R_6320544_6320708;chr2R_6320780_6320970 4.93 4.65 4.76 5.67 5.48 2.47 3.39 5.00 4.02 5.26 1.54 2.26 3.61 1.37 2.53 3.06 5.26 6.00 4.29 6.18 1.56 11.45 6.37 5.97 5.71 6.45 7.69 5.61 8.60 5.50 7.25 1.59 5.88 3.42 6.25 7.32 4.79 3.23 4.76 5.56 6.25 4.62 3.08 4.93 7.37 5.10 3.60 4.39 5.03 3.54 4.03 6.59 3.70 4.76 4.95 6.41 3.51 4.17 K alternative_donor glo,I_chr3R_7644679_7644739,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7644683_7644880;chr3R_7644683_7644932;chr3R_7644683_7644908;chr3R_7644683_7644743 chr3R_7644683_7644739 chr3R_7644583_7644682;chr3R_7644933_7644980 3.87 3.03 4.92 7.41 4.35 4.26 10.71 6.82 4.72 0.00 8.33 4.46 6.25 7.41 4.62 1.57 8.00 NA 6.45 3.17 6.45 5.15 1.74 5.77 3.92 10.87 2.97 1.15 7.69 1.89 7.41 2.44 3.41 3.81 1.61 0.00 3.39 4.44 3.08 3.08 3.64 4.46 5.00 0.00 3.64 3.57 1.64 4.24 4.48 3.51 4.11 2.38 1.19 3.45 7.14 2.35 3.30 1.67 K intron_retention wgn chrX - chrX_18519851_18522506 chrX_18519850_18519851;chrX_18522506_18522507 chrX_18519671_18519850;chrX_18522507_18522741 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 1.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.96 0.53 0.00 0.00 0.00 1.72 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.76 0.63 0.00 0.62 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 K jcn_only_AA RpL15 chr3LHet + chr3LHet_2397992_2398127 chr3LHet_2397992_2398049 chr3LHet_2397802_2397991;chr3LHet_2398128_2398454 83.17 83.33 74.29 92.47 NA 73.91 89.39 88.24 78.05 NA NA 85.71 80.43 88.57 NA 80.52 82.14 86.36 90.00 72.58 70.83 98.80 85.19 76.47 96.55 95.65 NA NA 80.56 70.83 90.24 78.12 NA 81.36 95.24 68.18 NA NA NA 83.78 87.50 78.57 74.07 87.18 NA 86.96 75.68 91.30 82.86 72.50 83.02 85.71 NA 81.48 NA 83.33 68.75 90.00 K intron_retention CG34413,RI_chr2R_20769295_20770153,I_chr2R_20771136_20772048,I_chr2R_20773500_20774745 chr2R + chr2R_20769206_20770153 chr2R_20769205_20769206;chr2R_20770153_20770154 chr2R_20769195_20769205;chr2R_20770154_20770253 82.57 NA NA NA NA NA 83.33 NA 86.67 NA NA 80.00 NA NA 54.55 NA NA NA NA 100.00 NA 96.77 85.71 72.73 88.89 NA 73.68 88.89 78.95 NA NA NA NA NA NA 80.00 69.23 NA NA 92.86 NA 69.23 NA NA NA NA NA NA 81.82 NA 88.89 NA NA NA NA NA NA NA K jcn_only_AA gammaCop,rod chr3R + chr3R_27398001_27398222 chr3R_27398001_27398219 chr3R_27397876_27398000;chr3R_27398223_27398878 40.77 39.19 43.75 48.41 45.24 42.86 40.43 35.71 44.09 46.81 40.38 37.85 37.04 29.76 44.79 39.66 45.10 43.53 39.08 42.93 50.98 43.50 45.16 33.33 42.86 41.38 36.23 43.16 38.30 34.33 43.53 34.85 45.92 44.54 37.89 40.77 43.75 33.96 50.70 40.62 42.50 40.54 38.96 37.21 47.95 40.00 43.75 39.67 37.14 52.05 34.59 29.63 41.24 27.50 43.48 33.73 27.91 50.00 K intron_retention r-l chr3R - chr3R_16898728_16898787 chr3R_16898727_16898728;chr3R_16898787_16898788 chr3R_16898211_16898727;chr3R_16898788_16899200 8.86 5.88 4.00 7.32 4.76 0.00 8.00 9.43 4.39 0.00 0.00 3.30 0.00 5.71 3.92 9.52 2.56 5.71 0.00 3.30 10.00 65.67 21.25 10.64 20.00 11.76 15.07 6.74 9.76 26.32 5.71 21.21 22.58 2.63 20.00 5.71 8.91 13.25 11.88 8.86 37.04 5.95 0.00 10.00 20.00 21.28 15.56 21.43 4.88 12.07 14.29 8.89 0.00 14.29 1.82 10.94 5.88 6.52 K intron_retention CG4769 chr3L + chr3L_5354126_5354592 chr3L_5354125_5354126;chr3L_5354592_5354593 chr3L_5353977_5354125;chr3L_5354593_5354725 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.43 0.00 0.00 0.00 0.00 0.45 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.50 0.23 0.00 0.13 0.00 0.00 0.35 0.00 0.00 0.00 0.42 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD sar1,I_chr3R_18185148_18185246 chr3R + chr3R_18182521_18183252;chr3R_18182490_18183252;chr3R_18182467_18183252 chr3R_18182472_18183252 chr3R_18183253_18183393;chr3R_18182460_18182466 88.28 89.33 85.34 87.58 84.09 85.66 89.45 89.41 88.34 93.15 87.86 87.91 87.15 89.18 90.31 89.02 87.67 89.22 87.90 90.56 89.38 92.00 89.19 88.98 83.17 89.40 86.46 79.73 86.21 80.68 85.76 88.28 85.19 85.71 90.91 81.82 92.75 89.36 90.71 89.02 84.27 90.14 92.00 85.31 86.52 84.62 88.46 81.90 90.46 93.55 88.02 86.07 87.67 85.86 90.66 91.07 88.99 87.37 K intron_retention Shawn_Tyler,CG14213 chrX + chrX_19534273_19534334 chrX_19534272_19534273;chrX_19534334_19534335 chrX_19534181_19534272;chrX_19534335_19534764 0.00 0.00 2.11 0.00 0.00 2.35 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 2.47 0.97 0.91 0.00 0.00 0.00 1.25 4.23 0.56 1.22 0.00 0.72 0.49 0.00 0.00 0.00 0.61 0.00 0.00 0.94 1.47 2.03 0.00 1.24 0.78 0.86 0.47 1.29 0.00 0.43 0.00 0.00 0.00 0.00 0.88 0.50 0.44 1.08 K intron_retention scra,EI_chr2R_3480349_3480405 chr2R + chr2R_3480866_3480922 chr2R_3480865_3480866;chr2R_3480922_3480923 chr2R_3480644_3480865;chr2R_3480923_3481286 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive Slip1,RI_chr4_684967_689045,I_chr4_685717_686576,RI_chr4_685717_689045,RI_chr4_687548_689045 chr4 + chr4_684967_689045,chr4_689201_689755 chr4_684967_686576,chr4_687559_689755 chr4_689046_689200 chr4_686577_687558 chr4_684914_684966;chr4_689756_690313 100.00 100.00 100.00 33.33 100.00 66.67 100.00 100.00 86.36 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 86.36 100.00 100.00 100.00 100.00 100.00 NA 88.24 57.14 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Ir40a,F_chr2L_22189560_22189744 chr2L - chr2L_22189688_22189744 chr2L_22189687_22189688;chr2L_22189744_22189745 chr2L_22189579_22189687;chr2L_22189745_22189844 0.00 NA NA NA NA NA 9.09 NA 0.00 NA NA NA NA NA NA NA NA NA NA 13.33 NA 0.00 9.09 NA NA NA NA 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA NA NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 3.92 0.00 K intron_retention cher,I_chr3R_12943024_12948119 chr3R - chr3R_12917947_12918008 chr3R_12917946_12917947;chr3R_12918008_12918009 chr3R_12917268_12917946;chr3R_12918009_12920040 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.11 0.26 0.22 0.00 0.15 0.49 0.00 1.03 1.87 0.61 0.34 0.60 0.00 0.00 0.34 0.24 0.00 0.15 0.39 0.13 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.19 0.00 0.00 K alternative_donor Ten-a chrX + chrX_12097912_12098171;chrX_12097945_12098171;chrX_12098012_12098171;chrX_12098030_12098171 chrX_12098018_12098171 chrX_12098172_12098306;chrX_12097907_12097911 33.33 NA 16.67 NA NA NA NA 25.00 25.00 NA NA NA NA NA 33.33 33.33 NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 25.00 NA NA 33.33 33.33 NA 25.00 33.33 NA NA NA NA 40.00 33.33 NA 33.33 NA NA NA NA NA NA NA K intron_retention Fps85D,I_chr3R_5194729_5194776,I_chr3R_5216796_5218450 chr3R - chr3R_5216796_5218462 chr3R_5216795_5216796;chr3R_5218462_5218463 chr3R_5216696_5216795;chr3R_5218463_5218550 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 2.35 0.00 0.00 0.00 0.00 0.00 1.79 0.00 K cassette sdt,E_chrX_8118081_8119115,C_chrX_8118081_8119117,I_chrX_8131684_8131842 chrX + chrX_8118081_8121903 chrX_8118081_8118817;chrX_8120117_8121903 chrX_8118818_8120116 chrX_8117989_8118080;chrX_8121904_8122131 54.39 54.69 48.94 85.42 60.98 53.66 66.67 68.18 65.00 52.94 33.33 61.29 54.84 61.29 58.33 81.08 13.64 42.42 69.70 72.16 40.00 60.53 55.41 44.93 50.00 62.86 54.39 44.00 46.81 51.72 64.71 46.88 67.11 71.70 44.68 50.85 57.14 46.67 57.43 33.33 60.00 62.50 69.23 50.00 46.81 43.18 53.66 50.00 62.34 45.10 47.95 51.22 63.64 41.67 64.29 52.63 45.83 69.23 K intron_retention RI_chrX_1405134_1408515,CG32810 chrX + chrX_1408702_1408759 chrX_1408701_1408702;chrX_1408759_1408760 chrX_1408516_1408701;chrX_1408760_1408825 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor shi,RI_chrX_15786633_15786860,RE_chrX_15793108_15795563 chrX + chrX_15786474_15786860;chrX_15786603_15786860;chrX_15786285_15786860;chrX_15786615_15786860;chrX_15786394_15786860 chrX_15786200_15786860 chrX_15786861_15786960;chrX_15786192_15786199 5.00 7.14 5.26 13.79 0.00 0.00 2.86 9.52 12.24 0.00 20.00 3.12 5.00 4.55 5.00 2.50 5.00 0.00 12.90 5.13 7.69 0.00 5.00 9.09 0.00 11.11 0.00 0.00 0.00 6.67 6.67 0.00 5.26 13.46 0.00 0.00 12.50 0.00 0.00 10.34 11.11 10.00 5.56 10.53 0.00 8.33 0.00 9.09 7.32 20.00 0.00 0.00 0.00 0.00 0.00 0.00 20.00 0.00 K alternative_donor CG4589,I_chr2R_20402394_20402462,I_chr2R_20402394_20402706 chr2R - chr2R_20402394_20402809;chr2R_20402394_20402753 chr2R_20402394_20402785 chr2R_20402294_20402393;chr2R_20402810_20402813 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA NA 0.00 NA NA 0.00 NA 0.00 NA 14.29 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K jcn_only_AD CaMKI,I_chr4_467862_471815,I_chr4_471136_473243,I_chr4_472116_472527,I_chr4_473338_473410,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_472081_473243 chr4_472116_473243 chr4_473244_473337;chr4_472016_472080 10.00 15.62 24.00 7.50 NA NA 18.75 3.39 11.63 NA NA 10.26 NA NA 4.17 14.29 22.73 NA 5.13 22.58 10.71 15.00 NA 4.35 NA NA 0.00 NA NA NA 11.11 NA NA 9.38 8.70 NA NA NA 0.00 6.67 11.11 0.00 11.11 NA NA 10.00 NA 8.33 6.15 NA 15.15 NA NA NA 13.16 9.09 NA 8.82 K intron_retention CG2316,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_210055,I_chr4_209875_210628,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_211303,RI_chr4_210688_211927,I_chr4_210688_213991,I_chr4_210688_214019,I_chr4_210688_214049,RI_chr4_210688_214450 chr4 - chr4_209875_210623 chr4_209874_209875;chr4_210623_210624 chr4_209775_209874;chr4_210624_210636 0.00 NA 0.00 13.64 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5960026 chr3R_5959309_5959310;chr3R_5960026_5960027 chr3R_5958937_5959309;chr3R_5960027_5960067 29.17 33.33 41.18 24.49 15.38 29.17 21.95 21.28 23.26 NA 30.77 30.23 42.86 29.17 28.00 22.45 13.64 15.38 21.43 33.33 35.00 66.67 33.33 30.77 25.00 23.08 40.00 43.75 39.13 36.36 18.52 40.00 44.44 21.43 25.00 42.86 NA NA 45.45 38.89 21.43 22.92 20.00 25.00 28.57 38.10 NA 42.86 26.32 NA 23.08 NA NA NA 32.00 6.67 NA 39.39 K alternative_acceptor CG7616 chr3L + chr3L_11163250_11163321 chr3L_11163250_11163309 chr3L_11163241_11163249;chr3L_11163322_11164146 76.92 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 76.92 K intron_retention CG14868,CG6136 chr3R - chr3R_11195671_11196040 chr3R_11195670_11195671;chr3R_11196040_11196041 chr3R_11195435_11195670;chr3R_11196041_11196089 100.00 NA 100.00 92.86 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K jcn_only_AA CG13124,RI_chr2L_9906444_9907607,RI_chr2L_9907784_9908405,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907545_9907607 chr2L_9907548_9907607 chr2L_9907608_9907707;chr2L_9907051_9907544 50.00 57.14 51.81 53.42 41.59 50.00 48.09 50.20 51.62 45.31 51.61 51.19 56.69 47.69 56.38 53.05 47.11 51.11 50.58 53.12 46.27 54.78 48.31 50.00 44.63 50.00 46.28 60.87 48.05 52.45 50.00 53.57 50.53 55.64 44.87 49.11 50.72 46.28 55.14 53.20 42.25 49.81 39.13 52.17 54.46 53.30 49.00 49.15 54.24 51.72 49.52 46.81 47.95 47.69 52.22 50.00 40.19 47.56 K intron_retention CG14299 chr3R - chr3R_14584415_14584462 chr3R_14584414_14584415;chr3R_14584462_14584463 chr3R_14583690_14584414;chr3R_14584463_14584568 4.17 NA 9.52 7.14 0.00 NA 0.00 11.76 0.00 NA NA 1.96 3.57 0.00 0.00 7.14 0.00 13.33 8.70 6.78 NA 0.00 2.38 0.00 NA 9.09 10.71 23.53 13.16 4.35 5.71 NA 0.00 6.25 0.00 10.53 0.00 0.00 0.00 4.00 NA 7.69 0.00 0.00 NA 9.09 10.53 5.63 0.00 NA 0.00 14.29 NA NA 6.25 NA NA NA K intron_retention CycA chr3L - chr3L_11820906_11820969 chr3L_11820905_11820906;chr3L_11820969_11820970 chr3L_11820297_11820905;chr3L_11820970_11821217 0.00 0.00 0.00 0.00 0.00 0.00 2.54 0.43 0.48 0.00 0.00 0.84 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 1.12 0.67 0.00 0.00 2.78 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 K jcn_only_AA CG12024,REI_chr3L_1857404_1857509 chr3L + chr3L_1857404_1857464;chr3L_1857404_1857512 chr3L_1857404_1857509 chr3L_1857304_1857403;chr3L_1857513_1857609 31.03 39.02 38.64 26.53 29.79 24.44 30.77 48.94 31.96 31.08 39.02 35.11 28.57 39.29 31.25 23.81 24.24 19.44 37.50 33.66 21.05 27.16 29.90 26.97 34.15 33.33 37.80 23.26 20.48 26.32 28.57 19.30 33.85 32.31 43.10 28.57 24.44 34.94 33.71 21.15 21.15 31.33 26.67 25.88 25.58 35.38 36.78 30.00 33.33 39.08 30.68 33.93 28.57 33.85 36.11 31.03 35.11 27.03 K intron_retention CG4552 chr2L + chr2L_1131182_1131263 chr2L_1131181_1131182;chr2L_1131263_1131264 chr2L_1129819_1131181;chr2L_1131264_1132413 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 1.33 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 K intron_retention CG2947 chrX + chrX_3684110_3684162 chrX_3684109_3684110;chrX_3684162_3684163 chrX_3684002_3684109;chrX_3684163_3684369 100.00 NA NA 93.33 NA NA 94.74 100.00 100.00 NA NA 100.00 NA 90.91 NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG9086,CEI_chrX_16859981_16861527,I_chrX_16861895_16862053 chrX - chrX_16861895_16862542 chrX_16861895_16862053 chrX_16861795_16861894;chrX_16862543_16862684 5.08 3.57 2.86 3.12 NA 4.35 6.00 12.07 8.33 0.00 14.29 5.88 2.86 3.57 0.00 10.67 3.70 0.00 10.26 11.69 0.00 5.41 9.76 4.76 NA 13.64 0.00 NA NA 4.55 8.93 NA NA 3.39 9.38 8.11 12.00 NA NA 13.16 NA 10.00 0.00 0.00 NA NA NA 0.00 5.49 NA 6.90 NA NA NA 0.00 NA NA NA K cassette CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261025_263086 chr4_261025_261321;chr4_261460_263086 chr4_261322_261459 chr4_260940_261024;chr4_263087_263108 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 91.67 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 90.91 100.00 100.00 100.00 93.33 100.00 85.71 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Hcf,I_chr4_390281_391716,I_chr4_391783_391844,I_chr4_391787_391885,I_chr4_391984_392875 chr4 + chr4_390281_391716;chr4_387389_391716 chr4_390591_391716 chr4_391717_391782 84.13 82.14 89.55 61.54 73.33 72.92 80.00 89.44 80.43 84.62 86.11 70.45 78.79 83.87 78.26 78.40 84.13 75.44 79.21 77.12 95.83 87.50 86.44 85.71 88.10 71.01 78.43 75.00 76.92 83.33 80.95 85.71 90.91 78.75 92.11 79.07 80.65 88.37 80.60 88.07 86.00 85.91 89.71 92.31 71.43 88.71 93.75 89.66 85.81 91.30 87.76 82.50 70.73 89.66 89.81 80.43 86.96 87.83 K intron_retention CG6126 chr3R - chr3R_12025617_12028512 chr3R_12025616_12025617;chr3R_12028512_12028513 chr3R_12024982_12025616;chr3R_12028513_12028864 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 6.67 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.92 NA 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 K alternative_donor CG5976 chr3L + chr3L_20467744_20468664 chr3L_20468598_20468664 chr3L_20468665_20469897;chr3L_20467566_20467743 100.00 90.91 100.00 100.00 100.00 100.00 100.00 89.47 95.24 100.00 100.00 100.00 100.00 100.00 91.67 93.75 90.91 100.00 91.67 100.00 91.67 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 90.00 100.00 85.71 100.00 100.00 90.91 88.89 92.86 90.00 100.00 93.75 K jcn_only_AA EDTP chr2R - chr2R_13320630_13320695 chr2R_13320636_13320695 chr2R_13320696_13320839;chr2R_13320279_13320629 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 96.00 97.83 NA 100.00 98.11 100.00 100.00 NA 100.00 NA NA 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 93.10 100.00 100.00 NA 100.00 100.00 96.77 100.00 100.00 95.45 100.00 100.00 100.00 NA K intron_retention CG3714,I_chr2L_4190825_4191774,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,I_chr2L_4196780_4197306,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4196780_4197306 chr2L_4196779_4196780;chr2L_4197306_4197307 chr2L_4196715_4196779;chr2L_4197307_4197338 96.82 90.91 94.74 96.55 100.00 NA 97.00 100.00 100.00 100.00 91.67 96.15 100.00 100.00 92.86 100.00 94.12 100.00 100.00 100.00 100.00 95.00 95.24 93.75 95.45 100.00 95.83 96.00 94.12 94.74 96.15 NA 94.12 96.88 100.00 100.00 92.86 93.33 90.00 95.45 100.00 96.77 100.00 95.83 88.89 100.00 100.00 100.00 96.55 100.00 100.00 100.00 NA NA 92.86 100.00 100.00 NA K alternative_acceptor CG8709,I_chr2R_4027128_4027182,I_chr2R_4027682_4027747,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4028119_4028185 chr2R_4028122_4028185 chr2R_4028186_4028252;chr2R_4028019_4028118 31.73 33.33 32.26 37.50 33.33 27.59 26.19 33.77 33.33 27.66 25.71 32.73 36.36 37.78 31.51 33.33 28.26 32.69 30.65 31.73 33.33 32.46 32.32 27.96 23.21 26.76 30.71 25.42 31.25 29.76 30.99 34.92 29.76 31.71 26.79 34.33 30.15 33.78 30.58 28.16 30.77 33.03 31.91 30.84 22.73 30.11 30.00 34.21 35.63 37.50 25.23 41.86 31.25 32.20 34.15 31.88 33.90 34.29 K alternative_donor alpha-Man-I,I_chrX_10218352_10219759,I_chrX_10218390_10219759 chrX - chrX_10218390_10219816;chrX_10218390_10219823;chrX_10218390_10219708;chrX_10218390_10219759 chrX_10218390_10219846 chrX_10218290_10218389;chrX_10219847_10219859 8.71 20.00 NA 8.33 NA 0.00 0.00 8.33 7.69 NA 16.67 6.67 11.11 14.29 0.00 12.50 16.67 14.29 16.67 10.00 NA 0.00 20.00 16.67 NA 0.00 14.29 NA NA 0.00 0.00 NA 0.00 9.09 20.00 25.00 NA NA 16.67 0.00 NA 11.11 0.00 NA NA 16.67 NA 0.00 7.69 NA 0.00 0.00 0.00 NA 11.11 NA 0.00 16.67 K alternative_donor Cg25C,I_chr2L_5029811_5029873 chr2L + chr2L_5029747_5030136;chr2L_5029637_5030136 chr2L_5029811_5030136 chr2L_5030137_5030237;chr2L_5029620_5029636 56.52 76.92 52.00 34.48 39.13 40.91 58.33 53.85 50.98 69.23 80.95 71.74 57.89 55.00 48.28 66.67 52.63 39.29 43.75 57.63 65.62 50.00 73.91 81.82 70.00 54.55 64.29 60.00 56.52 50.00 31.43 33.33 54.55 44.23 61.54 57.14 66.67 75.00 85.71 51.28 60.00 32.22 55.56 53.12 38.46 60.00 83.33 42.37 39.74 60.00 89.47 63.64 33.33 80.00 37.50 76.92 83.33 36.73 K jcn_only_AD mys,I_chrX_7958795_7961094 chrX + chrX_7955904_7957872;chrX_7955908_7957872;chrX_7955759_7957872;chrX_7956114_7957872;chrX_7955901_7957872;chrX_7956125_7957872;chrX_7955967_7957872 chrX_7955914_7957872 chrX_7957873_7958492;chrX_7955741_7955758 14.29 21.77 16.98 10.48 9.34 15.69 12.03 11.14 12.28 5.48 15.42 12.94 4.62 13.11 10.62 13.35 12.62 5.80 10.71 13.42 15.25 12.22 21.52 19.68 14.29 12.24 29.94 17.72 14.11 17.81 11.34 11.61 15.63 13.75 20.71 25.16 17.12 20.45 22.33 21.29 15.25 11.18 13.16 15.31 13.22 15.69 18.03 12.21 12.63 18.99 24.90 16.28 17.67 32.76 10.48 20.45 22.46 10.97 K alternative_donor CG3107 chr2R + chr2R_978147_979376 chr2R_978248_979376 chr2R_979377_979733;chr2R_978101_978146 12.40 NA NA 18.75 NA 6.67 5.56 9.09 14.29 NA NA 7.41 NA NA NA 13.04 NA NA 15.38 28.57 NA NA NA NA NA NA NA NA NA NA 14.29 NA NA 20.00 NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA 7.41 NA NA NA NA NA 11.76 NA NA NA K alternative_donor jim,I_chr3L_22791582_22791898 chr3L - chr3L_22792549_22793124 chr3L_22792549_22793040 chr3L_22792351_22792548;chr3L_22793125_22793884 84.00 73.33 85.00 70.45 88.24 85.71 86.67 83.33 83.72 90.00 70.00 84.00 93.75 75.00 81.82 83.33 81.25 72.73 85.71 78.79 85.71 83.67 72.73 89.47 76.47 83.33 79.31 92.86 80.95 70.59 84.21 90.91 93.33 75.00 86.67 84.62 76.74 77.42 84.85 86.49 88.89 88.89 83.33 94.74 92.31 73.33 93.33 86.96 90.62 78.95 80.00 76.47 92.31 76.47 88.89 88.89 93.33 83.33 K intron_retention CG33232,I_chr3L_2484838_2495010,CG1146,noncoding_10153 chr3L + chr3L_2489010_2490979 chr3L_2489009_2489010;chr3L_2490979_2490980 chr3L_2488983_2489009;chr3L_2490980_2492250 33.02 NA NA 34.78 NA 23.08 50.00 55.56 42.31 NA NA 31.25 NA 36.36 NA 18.75 NA NA 30.77 29.41 NA 35.71 45.45 NA NA NA NA 58.82 NA NA NA NA 17.65 26.32 NA NA NA NA NA 43.48 20.00 29.17 50.00 23.81 13.33 46.15 NA 22.73 37.93 NA NA NA NA NA 46.67 NA NA 12.50 K jcn_only_AD CG5004,E_chrX_17024712_17024996 chrX + chrX_17019966_17020033 chrX_17019978_17020033 chrX_17020034_17020118;chrX_17019909_17019965 87.50 NA 87.50 88.00 NA NA NA 85.71 96.67 NA NA 84.62 NA NA NA NA 90.00 NA NA 78.05 NA NA NA NA NA NA NA NA NA NA NA NA NA 86.96 NA NA NA NA NA NA NA 91.43 NA NA NA NA NA NA 86.11 NA NA NA NA NA 88.00 NA NA NA K multi_cassette CG40263,F_chr2RHet_1265687_1293040,F_chr2RHet_1298459_1298703,F_chr2RHet_1298459_1311408,F_chr2RHet_1298885_1299622,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1286572_1324445 chr2RHet_1286572_1292103;chr2RHet_1292187_1293055;chr2RHet_1293175_1324445 chr2RHet_1292104_1292186;chr2RHet_1293056_1293174 chr2RHet_1286565_1286571;chr2RHet_1324446_1324530 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG2116 chrX + chrX_8025600_8025655 chrX_8025599_8025600;chrX_8025655_8025656 chrX_8023773_8025599;chrX_8025656_8025816 98.51 100.00 97.37 100.00 96.15 100.00 100.00 98.18 100.00 100.00 100.00 96.61 100.00 100.00 97.50 100.00 95.45 96.55 96.30 99.04 95.45 97.37 98.36 98.04 100.00 100.00 98.04 96.88 100.00 98.11 100.00 97.47 97.06 98.04 100.00 98.08 98.57 100.00 97.18 98.91 97.98 98.65 100.00 100.00 96.04 97.94 98.55 98.84 98.51 98.11 98.39 100.00 100.00 98.51 100.00 98.33 100.00 98.25 K intron_retention aru,I_chr2L_864795_867505,snoRNA:Me28S-U1230 chr2L - chr2L_865061_865826 chr2L_865060_865061;chr2L_865826_865827 chr2L_864877_865060;chr2L_865827_865847 90.45 90.00 94.44 95.83 83.33 100.00 77.78 93.75 84.44 NA 88.89 90.91 88.46 95.65 89.47 95.83 95.45 75.00 95.65 90.91 87.50 92.86 NA NA NA 93.75 NA NA 95.24 93.75 93.33 93.75 100.00 91.11 80.00 84.62 NA NA NA 87.50 86.36 93.33 84.21 90.00 86.67 96.43 NA 87.18 90.91 88.89 90.00 88.89 NA NA 90.00 90.00 NA 92.11 K intron_retention CG5214,I_chr3R_7070385_7070508 chr3R + chr3R_7072116_7072179 chr3R_7072115_7072116;chr3R_7072179_7072180 chr3R_7071810_7072115;chr3R_7072180_7072686 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8108,EI_chr3L_9859462_9859590,I_chr3L_9860845_9860917,chr3L_9860918_9861213.0 chr3L + chr3L_9860845_9861353 chr3L_9860844_9860845;chr3L_9861353_9861354 chr3L_9860745_9860844;chr3L_9861354_9862035 10.26 9.28 16.25 25.00 14.81 7.89 22.41 18.56 13.25 11.54 5.00 11.20 20.00 10.00 10.64 14.49 10.00 7.78 17.31 14.94 15.49 7.25 9.09 11.68 16.95 8.08 13.33 13.33 8.89 9.17 33.59 6.06 4.49 13.13 12.36 9.17 5.00 6.45 8.40 10.40 8.20 11.17 15.25 19.05 5.88 8.28 10.00 6.13 8.63 14.13 8.76 10.17 7.08 10.26 14.46 14.15 6.00 2.45 K intron_retention betaTub60D chr2R + chr2R_20193662_20198244 chr2R_20193661_20193662;chr2R_20198244_20198245 chr2R_20193402_20193661;chr2R_20198245_20198353 0.54 0.33 0.00 1.05 0.73 1.53 0.83 1.11 0.46 0.00 0.83 0.44 1.61 1.54 0.64 1.69 1.16 0.00 0.48 0.20 0.00 0.73 0.91 0.90 1.52 0.37 0.54 1.76 3.54 0.00 0.70 0.00 0.00 0.83 0.80 0.71 0.47 0.00 0.23 0.76 0.00 0.81 0.00 0.36 0.26 0.23 0.00 0.82 1.10 0.00 0.48 0.70 0.00 0.00 0.00 0.57 0.57 0.00 K jcn_only_AA wge chr3R - chr3R_18539090_18539306;chr3R_18539087_18539306 chr3R_18539117_18539306 chr3R_18539307_18539565;chr3R_18538527_18539086 98.28 94.44 98.46 99.07 98.67 96.30 94.79 100.00 99.36 100.00 100.00 98.26 100.00 98.00 98.53 98.25 98.36 98.39 95.65 98.73 98.00 98.39 97.73 95.31 97.96 98.25 89.39 96.55 98.11 100.00 95.83 100.00 100.00 98.98 93.94 100.00 94.19 100.00 96.91 98.97 100.00 98.70 100.00 100.00 98.00 97.87 100.00 100.00 97.79 100.00 96.47 97.56 91.67 100.00 97.06 98.28 98.08 95.65 K alternative_acceptor mura,RI_chr3R_5373093_5377292,I_chr3R_5375533_5376618,RI_chr3R_5380786_5380850 chr3R - chr3R_5367732_5372519 chr3R_5368647_5372519 chr3R_5372520_5372875;chr3R_5367401_5367731 60.00 50.00 71.43 66.67 62.50 60.00 55.00 57.14 60.87 51.72 40.00 63.64 100.00 41.67 77.78 55.00 55.56 75.00 63.64 63.64 43.75 74.19 60.00 50.00 60.00 66.67 46.67 100.00 67.74 73.33 63.64 57.14 75.00 73.33 80.00 66.67 50.00 40.00 47.37 83.33 87.50 48.15 60.00 53.57 85.71 87.50 40.00 82.35 57.89 40.00 64.29 50.00 55.56 66.67 60.00 42.86 40.00 80.00 K jcn_only_AA 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5987603_5991760,I_chr2R_5988662_5991760,I_chr2R_5988666_5991760,I_chr2R_5988919_5991760,I_chr2R_5988931_5991760,I_chr2R_5990647_5991760,I_chr2R_5991249_5991760,I_chr2R_5991689_5991760,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5987356_5991764 chr2R_5987356_5991760 chr2R_5987330_5987355;chr2R_5991765_5991860 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.82 100.00 100.00 100.00 99.85 100.00 100.00 100.00 100.00 100.00 99.35 100.00 100.00 99.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention G-ialpha65A,I_chr3L_6967574_6972726 chr3L - chr3L_6967574_6972617 chr3L_6967573_6967574;chr3L_6972617_6972618 chr3L_6967474_6967573;chr3L_6972618_6973172 4.39 2.84 7.85 6.30 5.15 6.85 5.81 5.63 5.77 2.30 5.06 7.99 8.72 7.62 8.28 7.11 7.35 1.91 8.68 6.67 5.58 6.09 2.96 2.64 3.40 7.69 3.56 4.23 2.67 3.08 7.52 1.65 2.62 8.67 5.19 2.67 1.38 1.64 2.28 5.31 2.55 5.45 8.17 1.81 1.37 1.83 2.11 6.51 4.82 2.39 4.26 4.39 0.60 1.56 6.90 1.98 1.91 1.94 K intron_retention MTA1-like,I_chr3R_1466287_1466361 chr3R - chr3R_1466287_1466362 chr3R_1466286_1466287;chr3R_1466362_1466363 chr3R_1466199_1466286;chr3R_1466363_1466461 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1902,CG30000,I_chr2R_5495525_5495581 chr2R + chr2R_5491686_5491749 chr2R_5491685_5491686;chr2R_5491749_5491750 chr2R_5491374_5491685;chr2R_5491750_5492116 31.11 30.61 35.21 21.33 31.82 33.33 42.11 30.21 34.69 20.69 43.40 39.33 29.73 34.69 37.93 36.84 26.53 30.36 36.36 33.64 52.00 30.17 37.33 33.33 38.89 30.16 41.33 25.93 20.22 30.51 70.11 24.53 18.75 30.34 31.37 45.59 28.99 12.50 25.33 31.48 31.11 28.44 39.53 23.21 21.43 37.50 28.85 29.46 44.09 31.11 43.75 33.33 31.71 26.47 36.23 22.00 26.67 18.26 K intron_retention CycE,I_chr2L_15729157_15729277,I_chr2L_15737965_15746454 chr2L - chr2L_15745644_15746454 chr2L_15745643_15745644;chr2L_15746454_15746455 chr2L_15745392_15745643;chr2L_15746455_15746554 100.00 NA NA 100.00 NA 100.00 90.91 100.00 93.33 NA NA 100.00 NA 100.00 100.00 92.31 100.00 NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 92.86 88.89 NA NA NA NA 87.50 100.00 NA NA NA NA NA NA NA NA NA N multi_cassette 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5992573_5992699,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5992573_5994971 chr2R_5992573_5993206;chr2R_5993331_5993445;chr2R_5993610_5993828;chr2R_5994303_5994971 chr2R_5993207_5993330;chr2R_5993446_5993609;chr2R_5993829_5994302 chr2R_5992473_5992572;chr2R_5994972_5995071 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.09 100.00 100.00 100.00 100.00 100.00 100.00 89.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention TepII,I_chr2L_7696207_7698724,I_chr2L_7696808_7697006,I_chr2L_7697158_7697976,I_chr2L_7697582_7697976 chr2L - chr2L_7696207_7697006 chr2L_7696206_7696207;chr2L_7697006_7697007 chr2L_7696107_7696206;chr2L_7697007_7697106 0.00 NA NA NA NA NA 4.35 3.70 7.41 NA NA 12.50 NA NA NA 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA 14.29 NA NA 4.17 NA NA 0.00 NA NA NA NA NA NA NA 13.79 0.00 NA NA NA NA NA 9.52 NA NA NA NA NA 0.00 NA 0.00 NA K jcn_only_AA Acf1,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27624356_27624427 chr3R_27624356_27624414 chr3R_27624256_27624355;chr3R_27624428_27624527 100.00 98.04 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 98.89 97.56 100.00 100.00 99.34 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 97.83 100.00 98.98 97.83 100.00 100.00 100.00 98.90 98.59 100.00 97.74 100.00 100.00 100.00 100.00 100.00 98.73 99.29 99.01 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG4389,I_chr2L_9576230_9576665 chr2L - chr2L_9576230_9576635;chr2L_9576230_9576517 chr2L_9576230_9576665 chr2L_9576130_9576229;chr2L_9576666_9576755 0.00 1.32 2.00 0.00 0.00 0.00 0.00 0.39 0.79 0.00 0.00 0.00 3.68 0.00 0.00 0.00 1.56 0.86 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 1.80 0.00 0.00 0.00 0.89 0.00 0.00 0.00 3.53 0.00 1.29 0.46 3.17 0.37 0.92 0.00 1.16 1.15 0.00 0.79 0.47 0.00 0.00 0.78 0.00 0.00 0.00 0.00 1.20 0.00 K alternative_donor mav,RI_chr4_645290_646129 chr4 - chr4_645563_646134 chr4_645563_645616 chr4_645398_645562;chr4_646135_646229 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Nap1,I_chr2R_19793293_19793378,I_chr2R_19794246_19794473 chr2R - chr2R_19793317_19793378 chr2R_19793316_19793317;chr2R_19793378_19793379 chr2R_19793128_19793316;chr2R_19793379_19793441 0.13 0.00 0.25 0.35 0.00 0.00 0.00 0.17 0.25 0.00 0.00 0.30 0.14 0.00 0.51 0.32 0.00 0.13 0.26 0.26 0.34 0.00 0.22 0.13 0.60 0.28 0.67 0.31 1.65 0.00 0.28 0.29 0.00 0.20 0.00 0.21 0.00 0.00 0.46 0.12 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.31 0.14 0.00 0.00 0.31 0.00 0.50 0.13 0.00 K alternative_acceptor REI_chr3R_10392729_10393060,CG8066,RI_chr3R_10394291_10394385,I_chr3R_10394322_10394381,RI_chr3R_10400799_10401492 chr3R - chr3R_10394291_10394385 chr3R_10394322_10394385 chr3R_10394386_10394481;chr3R_10394222_10394290 99.24 99.53 99.32 99.44 98.91 100.00 98.69 100.00 99.63 100.00 99.17 99.58 99.08 100.00 97.96 98.76 100.00 99.31 99.07 99.14 99.26 99.19 99.46 99.00 97.53 99.21 99.08 99.17 97.35 100.00 99.32 98.84 99.68 99.40 99.24 99.54 99.59 98.45 98.99 100.00 99.11 100.00 98.82 100.00 99.46 99.64 99.26 98.94 99.57 98.84 100.00 99.10 99.04 98.96 99.38 98.75 98.72 98.67 K jcn_only_AA CG6707 chr3L - chr3L_9891303_9891622 chr3L_9891567_9891622 chr3L_9891623_9891693;chr3L_9891029_9891302 0.00 0.00 0.00 0.00 0.00 0.00 2.06 0.00 0.54 2.56 0.00 2.70 0.00 0.00 0.00 1.75 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 2.13 0.00 1.89 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AD RhoGDI chr3L + chr3L_19921875_19923914;chr3L_19921911_19923914 chr3L_19922009_19923914 chr3L_19923915_19924114;chr3L_19921868_19921874 94.67 93.90 93.57 96.70 92.20 94.52 97.00 96.82 94.25 93.75 93.26 96.41 90.76 96.95 92.95 91.90 88.73 94.93 91.53 93.08 95.40 94.71 98.31 98.00 93.64 92.66 98.66 99.26 97.92 95.97 92.52 92.21 71.21 91.21 100.00 99.21 94.39 95.56 95.28 91.59 97.40 92.19 94.37 100.00 89.29 97.42 98.56 93.41 94.67 94.21 97.53 95.07 98.31 100.00 92.72 98.33 96.70 94.00 K intron_retention l(2)s5379,I_chr2L_2229179_2229265 chr2L + chr2L_2229814_2229877 chr2L_2229813_2229814;chr2L_2229877_2229878 chr2L_2229638_2229813;chr2L_2229878_2231065 1.21 0.62 0.64 2.24 1.32 0.70 1.87 1.62 1.11 0.00 2.52 1.85 6.29 3.33 1.92 2.97 1.42 1.86 1.63 2.09 0.61 0.96 0.80 0.00 2.61 2.38 2.49 4.90 4.43 0.66 1.26 0.00 0.00 1.15 1.55 1.21 0.47 1.02 0.97 0.00 0.00 2.11 1.45 0.00 0.00 1.53 2.03 0.57 1.96 0.00 0.78 1.74 0.50 0.48 0.97 1.01 2.03 0.41 K jcn_only_AD RI_chr3L_19787260_19787323,Ir76a,RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19795219_19795435 chr3L_19795375_19795435 chr3L_19795436_19795940 91.67 NA NA 71.43 90.00 NA 90.91 90.91 94.74 NA NA 91.67 NA NA 88.00 96.43 NA NA NA 90.00 NA NA NA 95.24 NA NA NA 90.48 NA 95.45 88.89 100.00 90.48 84.00 NA NA 88.46 NA 91.67 91.49 NA 92.59 NA NA 95.24 92.00 NA 100.00 88.24 90.91 95.65 NA 95.83 NA 95.00 NA NA 94.00 K alternative_donor Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3295176;chr2R_3294566_3295244;chr2R_3294566_3294636;chr2R_3294566_3294638;chr2R_3294566_3295280;chr2R_3294566_3294642;chr2R_3294566_3294714 chr2R_3294566_3294634 chr2R_3294491_3294565;chr2R_3295281_3295302 14.29 7.69 10.53 15.62 9.09 21.43 13.04 13.04 8.11 0.00 12.50 12.12 0.00 14.29 11.11 12.50 16.67 20.00 5.56 12.20 18.75 18.75 14.29 10.53 6.67 7.14 16.67 18.75 17.65 17.65 18.75 21.43 16.00 12.00 15.38 26.32 15.79 8.33 18.18 10.71 16.67 15.38 21.43 6.67 5.88 12.50 7.69 21.74 19.35 15.38 15.00 14.29 7.14 25.00 13.64 16.67 12.50 11.54 K alternative_last_exon CG10602,mRpL13 chr2L - chr2L_18857404_18858951 chr2L_18858463_18858951 chr2L_18857177_18857403 chr2L_18858023_18858462 chr2L_18858952_18859075 96.58 95.45 98.11 98.51 92.68 98.11 94.64 95.71 91.51 96.77 97.50 95.05 82.50 95.65 95.38 91.04 97.06 96.36 97.73 96.58 95.45 96.88 98.61 95.56 97.73 97.92 96.77 96.23 97.37 95.83 98.28 98.25 98.72 97.47 93.48 96.00 94.74 98.18 95.74 96.97 94.83 97.22 97.30 92.86 97.65 95.96 97.47 98.55 95.56 98.48 94.94 93.02 98.82 94.94 95.45 95.29 99.19 99.04 K jcn_only_AA CG9293,RI_chr2L_13386386_13386487,I_chr2L_13394941_13395015 chr2L - chr2L_13386258_13386487 chr2L_13386386_13386487 chr2L_13386488_13386508;chr2L_13386099_13386257 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 K alternative_donor MED26,I_chr4_807836_808040,I_chr4_807836_808089 chr4 - chr4_807836_808040;chr4_807836_808006 chr4_807836_808077 chr4_807736_807835;chr4_808078_808140 96.77 96.00 100.00 85.07 100.00 96.15 91.18 97.22 95.92 94.44 92.86 96.77 96.97 93.94 100.00 96.00 91.67 91.30 97.22 90.00 100.00 100.00 100.00 92.00 100.00 100.00 92.11 96.15 98.11 100.00 100.00 100.00 97.87 92.54 100.00 93.33 NA 87.50 NA 100.00 96.55 94.44 96.30 96.15 NA 98.00 100.00 98.55 91.89 100.00 96.55 100.00 91.67 NA 100.00 NA NA 98.89 K jcn_only_AD regucalcin,I_chrX_11910759_11910811 chrX + chrX_11910755_11910811 chrX_11910759_11910811 chrX_11910812_11910911;chrX_11910659_11910754 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.17 0.13 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.22 0.08 0.00 0.00 0.00 0.00 0.00 0.13 0.09 0.08 0.00 K intron_retention RpL8,I_chr3L_2587513_2587750,I_chr3L_2587600_2587750,RI_chr3L_2587690_2587750,I_chr3L_2589746_2592161 chr3L + chr3L_2587690_2587750 chr3L_2587689_2587690;chr3L_2587750_2587751 chr3L_2587590_2587689;chr3L_2587751_2587850 86.60 NA NA NA NA NA 77.78 NA 66.67 NA NA NA 58.33 NA NA NA NA NA NA 80.00 NA 81.25 NA 90.00 NA NA 87.50 90.00 88.89 NA 55.00 NA NA NA NA NA 90.00 NA 88.89 42.86 88.89 90.91 NA 90.00 NA 72.73 63.64 NA 85.71 80.00 90.91 NA NA 72.73 NA 88.89 90.91 NA K jcn_only_AD miple2,I_chr3L_274251_274594 chr3L + chr3L_274808_274866 chr3L_274814_274866 chr3L_274867_274969;chr3L_274595_274807 0.00 2.86 0.00 0.00 NA 0.00 0.00 1.59 4.08 3.12 NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 1.85 3.77 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 1.49 0.94 1.39 3.45 0.00 1.41 0.00 0.00 0.95 0.00 1.44 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 K jcn_only_AA CG10990,noncoding_23570 chrX - chrX_13646061_13649285 chrX_13649095_13649285 chrX_13649286_13649418 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG3419 chr2R + chr2R_20301935_20302017;chr2R_20301935_20301990 chr2R_20301935_20301994 chr2R_20299701_20301934;chr2R_20302018_20302306 6.90 NA NA NA NA NA NA 6.25 6.67 NA NA 7.14 NA NA NA 18.18 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention kappaB-Ras,CG30503 chr2R - chr2R_3331791_3331853 chr2R_3331790_3331791;chr2R_3331853_3331854 chr2R_3331325_3331790;chr2R_3331854_3333022 65.16 NA NA 88.24 NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 90.91 NA NA NA 77.78 NA 76.92 NA 42.11 54.55 63.64 46.15 NA NA NA NA 66.67 88.89 NA 75.00 NA NA 57.14 62.50 77.78 63.64 58.33 NA NA NA NA NA NA NA NA NA K jcn_only_AD BM-40-SPARC,I_chr3R_22696095_22696231,I_chr3R_22696095_22696291,I_chr3R_22696095_22697413 chr3R - chr3R_22696095_22697647;chr3R_22696095_22696291;chr3R_22696095_22697413 chr3R_22696095_22696231 chr3R_22695995_22696094;chr3R_22697648_22697767 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.02 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.01 0.03 0.00 0.00 0.00 0.00 0.05 0.05 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.01 0.03 0.00 0.00 0.02 0.02 0.00 0.00 0.00 K intron_retention Su(P) chr3L - chr3L_16603930_16603991 chr3L_16603929_16603930;chr3L_16603991_16603992 chr3L_16603612_16603929;chr3L_16603992_16604398 0.00 0.00 0.00 4.11 0.00 0.00 0.00 1.43 0.00 NA 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 NA 3.85 0.00 0.00 0.00 6.06 9.09 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 1.27 0.00 0.00 0.00 4.65 2.94 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette trol,I_chrX_2387249_2389980,I_chrX_2391522_2395659 chrX - chrX_2378793_2380959 chrX_2378793_2380089;chrX_2380276_2380959 chrX_2380090_2380275 chrX_2378650_2378792;chrX_2380960_2382046 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rab7,CG33108,LSm3 chr3R + chr3R_19822428_19822487 chr3R_19822427_19822428;chr3R_19822487_19822488 chr3R_19822319_19822427;chr3R_19822488_19822737 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 1.35 0.00 0.00 0.00 0.00 2.15 8.16 0.00 0.00 0.00 0.00 0.00 1.15 0.78 0.00 0.00 0.00 0.00 0.69 0.89 0.00 0.00 0.56 0.00 0.00 0.00 0.57 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 K intron_retention MRP,I_chr2L_12727117_12729243,F_chr2L_12727117_12736035 chr2L + chr2L_12728242_12737958 chr2L_12728241_12728242;chr2L_12737958_12737959 chr2L_12728173_12728241;chr2L_12737959_12738176 10.78 7.29 11.36 25.00 16.22 13.64 10.42 20.00 10.38 14.29 19.23 17.03 14.74 12.99 15.79 10.62 10.17 6.74 10.78 15.41 24.32 7.69 11.17 9.02 11.36 11.29 11.92 18.33 8.86 12.33 8.79 0.00 12.66 14.18 8.25 10.00 8.05 5.49 10.00 9.91 5.06 11.38 15.69 9.50 8.47 7.37 6.06 19.40 12.33 8.06 11.95 11.43 8.24 6.60 12.36 4.76 5.26 7.07 K intron_retention CG3589 chr2R + chr2R_20672784_20672834 chr2R_20672783_20672784;chr2R_20672834_20672835 chr2R_20672324_20672783;chr2R_20672835_20672935 6.35 0.00 6.67 21.74 NA NA 6.90 6.45 6.67 NA 0.00 6.25 NA NA 6.67 16.67 18.18 NA NA 4.44 NA 0.00 8.33 0.00 8.33 6.67 12.00 6.67 0.00 0.00 0.00 8.00 0.00 7.41 0.00 NA 0.00 7.14 0.00 6.67 0.00 11.90 NA 5.26 11.11 2.86 0.00 NA 6.67 6.67 0.00 0.00 0.00 0.00 0.00 14.29 14.29 0.00 K intron_retention noncoding_21514,CG4025 chrX + chrX_1971181_1971250 chrX_1971180_1971181;chrX_1971250_1971251 chrX_1970994_1971180;chrX_1971251_1971372 1.98 2.27 1.71 0.47 1.02 2.63 1.40 1.56 3.20 0.00 3.39 1.87 2.20 3.03 1.22 1.24 1.10 0.00 2.17 1.41 0.00 2.11 3.86 1.83 3.65 0.00 4.27 4.29 4.31 4.07 0.45 2.11 5.95 0.51 1.14 1.39 5.88 1.46 1.77 3.92 3.23 1.94 0.00 2.83 6.29 2.66 2.03 2.70 0.81 2.96 1.98 2.30 1.66 3.11 0.51 2.16 1.23 1.56 K intron_retention CG31211,I_chr3R_7777267_7777327 chr3R + chr3R_7777215_7777444 chr3R_7777214_7777215;chr3R_7777444_7777445 chr3R_7777167_7777214;chr3R_7777445_7777547 35.23 45.71 33.33 53.85 35.48 33.33 53.19 47.06 35.23 32.00 31.25 33.33 31.37 36.59 36.54 52.83 39.29 35.42 38.78 34.74 47.06 22.22 33.33 33.33 34.62 43.33 52.50 50.00 15.09 30.00 41.67 20.83 14.77 50.79 31.71 55.88 26.92 45.71 26.23 28.09 39.47 35.53 29.27 37.78 20.75 29.69 40.43 28.95 36.00 25.58 44.07 39.29 30.95 32.35 33.33 32.65 37.78 36.71 K intron_retention CG2246,I_chr3R_26421344_26425985,RI_chr3R_26421349_26425985,I_chr3R_26421349_26427017,noncoding_20201 chr3R - chr3R_26421349_26425845 chr3R_26421348_26421349;chr3R_26425845_26425846 chr3R_26421249_26421348;chr3R_26425846_26425897 0.00 4.76 3.85 0.00 0.00 0.00 0.00 0.00 2.63 NA 7.69 0.00 0.00 0.00 10.00 7.14 0.00 14.29 0.00 7.02 5.00 12.50 0.00 0.00 13.33 0.00 11.11 NA 14.29 NA 0.00 0.00 6.67 2.70 0.00 0.00 7.69 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.64 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Oatp74D,I_chr3L_17500359_17500724 chr3L + chr3L_17494579_17500724 chr3L_17500359_17500724 chr3L_17500725_17500824;chr3L_17494545_17494578 0.00 0.00 5.56 2.78 0.00 0.00 3.12 2.56 1.89 NA 0.00 3.45 6.67 5.26 10.00 3.23 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 16.67 20.00 0.00 0.00 0.00 0.00 0.00 2.63 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 NA NA 0.00 0.00 2.38 0.00 0.00 0.00 0.00 NA 5.56 NA 0.00 0.00 K intron_retention bbx chrX + chrX_21236287_21240718 chrX_21236286_21236287;chrX_21240718_21240719 chrX_21234687_21236286;chrX_21240719_21241749 5.75 6.45 7.50 10.20 8.89 0.00 8.93 5.88 7.32 5.26 5.00 6.98 10.53 2.56 4.00 8.20 6.06 4.00 8.89 3.90 5.13 12.50 6.56 6.52 3.23 7.50 4.17 14.81 15.38 4.35 4.00 0.00 0.00 5.88 5.71 8.57 4.08 4.44 4.17 5.36 7.41 5.75 9.68 5.71 10.53 6.06 5.26 2.94 6.52 9.68 4.65 5.56 3.70 3.45 8.70 5.88 2.50 0.00 K intron_retention qkr58E-2 chr2R + chr2R_18304537_18304600 chr2R_18304536_18304537;chr2R_18304600_18304601 chr2R_18303933_18304536;chr2R_18304601_18304701 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.58 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 K alternative_acceptor I_chr3L_22859135_22860499,Ssl1,slif chr3L + chr3L_22872249_22872447 chr3L_22872249_22872305 chr3L_22872189_22872248;chr3L_22872448_22872530 80.00 80.00 NA NA NA NA 62.50 60.00 66.67 NA NA 60.00 NA NA NA 70.00 NA NA NA 75.00 NA NA 83.33 85.71 NA NA 85.71 NA NA 83.33 71.43 57.14 NA 71.43 NA NA 85.71 NA 100.00 90.91 NA 83.33 NA 85.71 NA 100.00 85.71 60.00 64.29 83.33 71.43 71.43 83.33 80.00 NA 85.71 75.00 80.00 K jcn_only_AD CG12393,CG9135 chr2L + chr2L_6048635_6048693;chr2L_6048631_6048693 chr2L_6048627_6048693 chr2L_6048694_6048702;chr2L_6048512_6048626 8.70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.54 NA NA NA NA NA NA NA NA 8.70 NA 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG1309 chr3L + chr3L_4261306_4261361 chr3L_4261305_4261306;chr3L_4261361_4261362 chr3L_4261291_4261305;chr3L_4261362_4261649 3.77 6.12 2.90 3.03 0.00 4.92 0.00 6.52 4.00 0.00 0.00 6.38 2.94 7.14 4.29 2.99 5.13 0.00 4.65 1.50 0.00 7.14 2.74 5.26 8.82 4.69 1.75 7.55 3.33 0.00 3.77 0.00 5.26 5.00 0.00 6.52 3.12 3.77 2.70 5.48 5.97 4.50 5.13 0.00 5.06 2.67 3.70 3.77 2.86 5.17 3.39 5.00 3.77 7.50 3.17 3.92 4.17 2.44 K intron_retention CG6695 chr3R + chr3R_20483332_20484042 chr3R_20483331_20483332;chr3R_20484042_20484043 chr3R_20483238_20483331;chr3R_20484043_20484133 19.05 13.16 19.05 18.18 12.50 31.58 31.82 26.92 18.37 19.05 NA 29.03 NA 22.22 36.84 47.06 26.32 17.65 36.36 21.57 38.46 19.30 10.53 18.92 20.00 31.25 12.82 39.29 7.14 14.81 46.15 19.23 12.50 16.00 14.81 22.58 10.00 11.76 18.75 19.23 17.50 28.26 15.38 20.00 12.20 21.43 14.29 25.58 27.50 16.33 17.50 20.00 14.89 14.29 24.00 14.29 14.63 20.93 K intron_retention CG3887 chr2L + chr2L_5011336_5011411 chr2L_5011335_5011336;chr2L_5011411_5011412 chr2L_5011184_5011335;chr2L_5011412_5011484 0.00 0.00 0.37 2.82 0.00 0.43 0.80 0.63 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.46 0.87 0.00 0.00 0.00 0.00 0.00 0.86 3.40 3.45 0.63 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.90 0.00 0.42 0.00 0.00 0.00 0.00 0.00 1.05 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 K alternative_donor CG5537,I_chr3L_5804425_5804485 chr3L + chr3L_5804421_5804485 chr3L_5804425_5804485 chr3L_5804486_5804585;chr3L_5804325_5804420 4.17 2.70 2.00 10.14 4.55 5.88 8.82 2.70 3.55 8.33 4.62 2.78 1.69 3.39 4.88 3.26 4.17 4.82 1.41 3.09 3.95 20.83 5.51 2.82 6.15 11.11 5.66 4.88 9.52 2.27 7.78 1.23 8.79 3.81 2.78 18.03 3.50 3.17 3.86 5.11 8.20 4.17 3.39 1.90 4.08 5.17 6.02 5.68 2.27 4.46 5.38 7.46 1.80 4.20 2.04 3.31 3.38 3.81 K cassette CG8929 chr2R + chr2R_16214899_16215831;chr2R_16214899_16215371 chr2R_16214899_16214948;chr2R_16215069_16215371,chr2R_16215069_16215831 chr2R_16214949_16215068 chr2R_16214792_16214898;chr2R_16215832_16216526 11.36 14.29 14.00 10.91 20.00 11.36 16.95 13.56 14.29 13.33 21.43 9.88 17.24 18.92 14.29 12.24 16.67 12.82 14.63 14.29 13.79 1.79 9.52 7.02 5.71 13.64 19.35 11.11 20.00 5.26 14.58 4.17 4.76 17.31 5.00 4.35 8.33 10.81 9.52 13.73 16.67 13.89 17.24 9.68 6.67 3.45 9.52 15.15 10.81 9.30 6.76 11.76 7.89 1.82 8.89 10.00 4.65 8.51 K mutually_exclusive rl,I_chr2RHet_199154_201722,I_chr2RHet_199154_207044,RI_chr2RHet_203476_203577,RI_chr2RHet_203592_207044,R_chr2RHet_207162_232568,I_chr2RHet_232696_247338,RI_chr2RHet_240197_247338 chr2RHet + chr2RHet_199154_207044,chr2RHet_207156_232560 chr2RHet_199154_203348,chr2RHet_203476_232560 chr2RHet_207045_207155 chr2RHet_203349_203475 chr2RHet_199054_199153;chr2RHet_232561_232695 57.14 NA NA 0.00 NA NA 100.00 NA NA NA NA 50.00 NA NA NA 66.67 NA NA NA NA NA NA 50.00 50.00 100.00 50.00 90.00 NA 80.00 NA NA NA NA NA NA 81.25 NA NA NA 57.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA K alternative_donor Rph,I_chrX_10647710_10648325,RI_chrX_10649048_10651427 chrX - chrX_10647710_10651427 chrX_10647710_10648325 chrX_10647610_10647709;chrX_10651428_10651527 12.50 8.33 13.33 12.50 15.38 11.76 5.00 22.22 12.12 0.00 20.00 21.05 12.50 13.33 13.04 25.00 20.00 11.11 14.29 9.09 8.33 5.56 12.50 10.00 NA 14.29 16.67 8.33 0.00 12.50 22.22 NA 0.00 23.53 0.00 NA 0.00 7.14 7.69 16.67 NA 16.00 16.67 6.67 14.29 14.29 0.00 20.00 14.29 20.00 7.69 14.29 10.00 NA 11.11 14.29 0.00 16.67 K alternative_donor sar1,I_chr3R_18185148_18185246 chr3R + chr3R_18182472_18183252;chr3R_18182521_18183252;chr3R_18182467_18183252 chr3R_18182490_18183252 chr3R_18183253_18183393;chr3R_18182460_18182466 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.53 0.00 0.00 0.76 0.00 1.20 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.65 0.00 1.20 1.35 K alternative_acceptor CG11148,I_chr4_882005_882418,I_chr4_885038_885994,RI_chr4_886921_887162 chr4 - chr4_885034_885973 chr4_885038_885973 chr4_885974_886268;chr4_884938_885033 98.48 100.00 100.00 97.50 100.00 100.00 98.33 98.48 97.44 93.33 96.55 98.55 100.00 97.14 100.00 96.72 96.55 100.00 100.00 96.74 100.00 100.00 96.43 95.83 100.00 98.08 97.06 95.00 100.00 96.67 97.30 100.00 97.44 97.06 90.91 100.00 96.43 100.00 100.00 100.00 94.12 98.63 97.22 100.00 90.00 100.00 100.00 100.00 98.86 94.74 96.30 100.00 100.00 88.89 100.00 92.86 100.00 97.50 K intron_retention CG7414,I_chr3L_21819515_21819581 chr3L + chr3L_21819515_21819574 chr3L_21819514_21819515;chr3L_21819574_21819575 chr3L_21819415_21819514;chr3L_21819575_21819852 0.00 0.00 0.00 0.50 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.25 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 K alternative_last_exon vn chr3L - chr3L_5806575_5809750 chr3L_5807967_5809750 chr3L_5806434_5806574 chr3L_5806791_5807966 chr3L_5809751_5809800 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention scu,RhoGAP16F chrX + chrX_17988849_17989117 chrX_17988848_17988849;chrX_17989117_17989118 chrX_17988795_17988848;chrX_17989118_17990486 26.38 NA NA NA NA 36.36 20.00 NA 26.09 NA NA 45.45 NA NA NA 35.71 NA 14.29 NA 35.71 NA NA 30.77 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA 26.67 NA 26.09 NA NA NA 12.50 NA 20.00 NA NA NA NA NA NA NA NA 36.36 NA K intron_retention CG7712 chr2R - chr2R_6784923_6784976 chr2R_6784922_6784923;chr2R_6784976_6784977 chr2R_6784554_6784922;chr2R_6784977_6785092 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 5.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Topors chr2R + chr2R_14861228_14861287 chr2R_14861227_14861228;chr2R_14861287_14861288 chr2R_14860503_14861227;chr2R_14861288_14861748 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 11.54 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 K alternative_acceptor rok,RI_chrX_16526333_16526477 chrX - chrX_16521501_16521628 chrX_16521528_16521628 chrX_16521629_16521903;chrX_16521334_16521500 39.71 41.18 48.84 35.19 36.73 40.00 63.64 47.14 41.90 34.43 39.29 40.82 47.37 47.50 45.95 41.67 47.62 48.72 39.39 39.18 47.62 49.50 22.08 31.96 45.00 45.65 27.38 37.50 43.75 28.33 45.65 40.00 32.14 40.79 51.06 71.93 30.67 34.04 39.13 34.48 33.33 42.27 48.65 34.67 28.12 38.78 27.87 35.90 44.57 30.77 36.17 39.71 39.53 29.55 52.83 29.31 30.23 41.67 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2395659 chrX_2388671_2390808;chrX_2390959_2391350;chrX_2391522_2393243;chrX_2393712_2394269;chrX_2394396_2395151;chrX_2395275_2395659 chrX_2390809_2390958;chrX_2391351_2391521;chrX_2393244_2393711;chrX_2394270_2394395;chrX_2395152_2395274 chrX_2388641_2388670;chrX_2395660_2395759 25.00 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor Upf1,I_chrX_11799010_11799076 chrX - chrX_11798981_11799067 chrX_11799010_11799067 chrX_11799068_11799388;chrX_11798910_11798980 63.97 65.52 70.97 81.82 56.52 64.29 61.11 62.07 60.71 60.87 53.85 67.31 68.18 81.48 61.29 70.00 69.57 53.85 53.57 63.64 61.11 78.95 72.50 80.77 85.00 69.23 86.21 86.36 83.33 68.00 NA 50.00 70.97 57.45 54.55 30.00 64.58 67.86 64.44 57.50 36.36 56.25 58.62 75.86 85.71 55.00 84.21 43.75 53.97 62.50 52.63 70.00 68.42 91.67 52.78 63.16 51.72 53.33 K jcn_only_AD noncoding_18164,F_chr3R_17192061_17200781,RI_chr3R_17193489_17193631 chr3R + chr3R_17193489_17193631;chr3R_17193407_17193631 chr3R_17193416_17193631 chr3R_17193632_17193731;chr3R_17193389_17193406 80.00 80.95 NA 68.75 NA 76.19 71.79 71.88 75.00 NA NA 78.95 NA 70.00 72.73 85.71 NA NA 80.00 78.12 NA NA 80.00 NA NA 85.00 68.00 85.71 NA NA 79.82 NA NA 73.33 NA NA NA NA 91.30 63.64 85.00 85.00 86.36 76.00 83.33 81.48 NA 91.30 94.74 86.11 76.19 NA NA NA 81.25 92.59 80.00 100.00 K alternative_acceptor MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17395228_17397622 chr2R_17395228_17397610 chr2R_17395018_17395227;chr2R_17397623_17397706 4.84 6.00 0.00 6.90 4.76 7.41 2.70 7.14 5.00 6.12 0.00 5.88 NA 6.67 8.00 14.29 4.35 0.00 NA 3.70 0.00 3.57 5.26 2.06 6.35 10.53 4.48 4.76 1.72 2.08 9.52 6.06 1.75 2.56 1.85 9.09 5.56 4.76 4.26 4.84 8.33 6.15 0.00 3.85 5.56 5.77 2.86 10.81 6.52 1.54 9.68 3.23 2.04 5.26 5.00 1.72 2.35 5.41 K intron_retention ChLD3 chr2L + chr2L_16741889_16741946 chr2L_16741888_16741889;chr2L_16741946_16741947 chr2L_16741366_16741888;chr2L_16741947_16742616 32.00 30.77 14.29 16.67 NA NA 43.75 NA 44.83 NA 50.00 20.00 60.00 NA 14.29 66.67 NA NA 35.71 25.93 NA 100.00 52.94 20.00 NA NA 26.32 NA NA NA 46.15 NA 47.06 26.32 NA NA 33.33 NA 23.08 57.14 NA 32.00 NA 0.00 38.46 25.00 NA 38.46 50.00 23.08 30.00 14.29 NA NA 14.29 35.29 NA NA K jcn_only_AD Pdp,RI_chrX_7626915_7627016,RI_chrX_7626915_7627048 chrX - chrX_7626915_7627020 chrX_7626915_7627016 chrX_7626815_7626914;chrX_7627021_7627116 0.77 0.00 4.00 5.26 0.00 0.00 7.50 7.32 4.69 NA 0.00 0.00 9.09 5.88 13.33 3.23 0.00 0.00 3.85 0.00 7.69 0.00 1.82 0.00 0.00 0.00 2.78 3.33 3.33 3.33 16.67 0.00 NA 2.44 0.00 0.00 0.00 2.04 1.54 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 NA 2.94 2.33 3.45 1.69 4.35 0.00 K intron_retention CG15011 chr3L - chr3L_4258063_4258115 chr3L_4258062_4258063;chr3L_4258115_4258116 chr3L_4257946_4258062;chr3L_4258116_4258274 17.65 NA NA NA NA NA NA 12.50 17.24 NA NA 21.43 NA NA 30.77 22.22 NA NA 33.33 10.53 NA NA NA 12.50 NA NA 7.69 NA NA NA 18.75 NA NA 35.71 NA NA NA NA NA 17.65 NA 23.08 NA 14.29 NA 14.29 NA 16.67 25.00 NA NA NA NA 0.00 NA NA NA 23.08 K intron_retention CG11180 chr2R - chr2R_16508823_16508964 chr2R_16508822_16508823;chr2R_16508964_16508965 chr2R_16508401_16508822;chr2R_16508965_16510679 38.46 53.33 40.00 61.29 NA 50.00 38.46 37.50 42.86 33.33 66.67 30.95 46.67 60.00 52.17 56.67 66.67 26.32 50.00 37.14 NA 30.00 28.00 21.43 27.27 52.94 52.63 50.00 NA NA 45.00 42.86 30.77 47.06 25.00 NA 33.33 NA 26.09 17.65 30.77 43.18 52.63 41.67 34.78 22.58 27.78 33.33 53.33 42.86 27.59 40.00 34.48 33.33 43.48 35.29 28.12 28.30 K intron_retention Pect,I_chr2L_13207997_13208109,E_chr2L_13208285_13210076 chr2L + chr2L_13208778_13209501 chr2L_13208777_13208778;chr2L_13209501_13209502 chr2L_13208665_13208777;chr2L_13209502_13209599 99.17 98.57 100.00 98.92 100.00 100.00 100.00 98.94 100.00 97.62 100.00 98.81 93.75 100.00 100.00 98.65 100.00 100.00 97.87 99.17 100.00 97.92 99.02 98.89 98.04 100.00 99.19 100.00 97.50 100.00 95.24 97.67 96.49 100.00 98.15 100.00 100.00 98.33 100.00 100.00 100.00 99.04 100.00 98.72 97.37 98.28 100.00 100.00 98.91 98.41 97.94 98.31 100.00 100.00 98.36 100.00 98.72 100.00 K intron_retention Vha100-2 chr3R - chr3R_14217240_14217299 chr3R_14217239_14217240;chr3R_14217299_14217300 chr3R_14216981_14217239;chr3R_14217300_14218927 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1662702_1662764 chr2R_1662701_1662702;chr2R_1662764_1662765 chr2R_1662638_1662701;chr2R_1662765_1662934 1.82 0.00 1.05 5.56 3.92 0.00 4.35 4.48 1.25 0.00 3.90 2.47 1.82 2.15 0.00 0.92 3.12 1.02 1.41 2.21 3.75 2.94 4.04 2.60 0.00 9.21 5.06 NA 11.76 0.00 1.82 0.00 0.00 2.44 1.61 7.14 0.00 0.00 1.90 1.04 9.68 2.82 1.72 0.00 0.00 1.23 1.16 0.00 3.82 0.00 3.23 0.00 2.50 0.00 3.16 2.15 2.01 0.00 K jcn_only_AD vlc chr2R + chr2R_1589953_1590371;chr2R_1589894_1590371;chr2R_1589799_1590371;chr2R_1589805_1590371;chr2R_1590318_1590371;chr2R_1589807_1590371;chr2R_1590294_1590371;chr2R_1589693_1590371 chr2R_1589722_1590371 chr2R_1590372_1590451;chr2R_1589612_1589692 10.71 10.91 11.59 16.19 12.73 14.29 7.22 12.70 9.32 14.29 8.89 10.66 9.46 17.57 19.44 10.74 10.64 23.81 6.25 6.57 5.66 11.43 4.17 12.12 4.55 3.33 6.67 9.68 6.67 3.77 7.14 16.67 6.78 8.70 14.89 1.92 20.00 15.79 8.57 8.54 16.67 11.36 8.22 16.90 19.35 5.56 18.18 11.11 9.29 10.71 14.71 14.55 10.53 11.76 14.77 12.50 8.70 8.70 K intron_retention Ptpmeg,I_chr3L_353688_353782,I_chr3L_355125_355175 chr3L + chr3L_351317_351366 chr3L_351316_351317;chr3L_351366_351367 chr3L_351311_351316;chr3L_351367_351663 94.12 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 88.24 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 87.50 K intron_retention Rsf1 chr2L - chr2L_10263456_10263513 chr2L_10263455_10263456;chr2L_10263513_10263514 chr2L_10262426_10263455;chr2L_10263514_10263582 100.00 97.14 100.00 98.55 96.67 96.67 94.12 96.67 NA 94.44 100.00 98.28 100.00 100.00 100.00 98.11 96.30 97.06 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 97.30 100.00 100.00 100.00 98.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.55 100.00 95.45 98.00 100.00 100.00 100.00 96.88 96.67 96.67 97.06 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG31720,F_chr2L_10234951_10235484 chr2L - chr2L_10236292_10236374;chr2L_10236287_10236374 chr2L_10236257_10236374 chr2L_10236375_10236547;chr2L_10236031_10236256 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 0.00 NA 14.29 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA K intron_retention CG2246,I_chr3R_26421344_26425985,I_chr3R_26421349_26427017 chr3R - chr3R_26419572_26420539 chr3R_26419571_26419572;chr3R_26420539_26420540 chr3R_26419542_26419571;chr3R_26420540_26420567 1.94 0.00 5.56 0.00 0.00 0.00 5.00 3.77 3.45 6.67 4.35 6.35 0.00 9.09 2.17 0.00 0.00 0.00 0.00 2.78 0.00 1.94 3.12 0.00 7.41 0.00 3.77 4.44 0.00 3.92 0.00 3.08 6.52 4.44 0.00 4.76 0.94 3.64 5.97 3.77 0.00 2.60 0.00 0.00 3.03 3.12 7.35 2.60 0.00 1.54 0.00 0.00 0.00 6.67 0.00 1.67 1.11 0.91 K intron_retention Sap-r,E_chr3R_26711286_26714646,I_chr3R_26712627_26712857,I_chr3R_26712627_26713553,I_chr3R_26712627_26714606,RI_chr3R_26713323_26714382 chr3R - chr3R_26712627_26714382 chr3R_26712626_26712627;chr3R_26714382_26714383 chr3R_26712527_26712626;chr3R_26714383_26714461 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Arf102F,RI_chr4_1144958_1145393,I_chr4_1152220_1152710,I_chr4_1152585_1152687 chr4 + chr4_1144958_1145061 chr4_1144957_1144958;chr4_1145061_1145062 chr4_1144858_1144957;chr4_1145062_1145324 0.00 0.00 0.00 0.78 0.00 0.00 0.00 1.06 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG10462 chr2L - chr2L_19733070_19733162 chr2L_19733070_19733154 chr2L_19733001_19733069;chr2L_19733163_19733336 2.13 2.08 0.00 2.33 0.00 0.00 2.74 2.20 1.64 0.00 0.00 2.00 2.33 2.13 4.00 2.74 2.08 0.00 1.67 0.98 0.00 2.86 3.08 3.28 2.78 2.50 1.19 0.00 3.23 0.00 5.00 4.65 3.23 2.30 0.00 4.65 2.38 2.78 1.49 2.82 0.00 1.83 0.00 2.04 2.13 2.22 3.57 2.44 2.04 0.00 4.84 2.70 0.00 2.44 4.92 2.00 1.15 1.82 K intron_retention Gbeta13F,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,RI_chrX_15755345_15755409 chrX + chrX_15755526_15755598 chrX_15755525_15755526;chrX_15755598_15755599 chrX_15755417_15755525;chrX_15755599_15756919 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2813977;chr2R_2814097_2814174;chr2R_2814327_2817753 chr2R_2813978_2814096;chr2R_2814175_2814326 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG7337,I_chr2L_1910010_1910066,RI_chr2L_1911951_1913208,RI_chr2L_1912284_1913208,I_chr2L_1938620_1938887,I_chr2L_1942183_1942233 chr2L + chr2L_1911951_1913208 chr2L_1911950_1911951;chr2L_1913208_1913209 chr2L_1911872_1911950;chr2L_1913209_1913308 55.50 NA NA NA NA NA 65.00 41.67 57.14 NA NA NA 70.00 NA NA 53.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA 57.14 NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor RpS27 chr3R - chr3R_21072088_21072169 chr3R_21072104_21072169 chr3R_21072170_21072238;chr3R_21072035_21072087 100.00 99.96 100.00 99.95 100.00 100.00 100.00 99.94 99.96 100.00 100.00 100.00 99.92 100.00 99.93 100.00 99.91 99.91 99.90 99.95 99.89 100.00 100.00 99.96 100.00 99.89 99.96 99.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.96 99.90 100.00 100.00 100.00 100.00 100.00 99.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.98 100.00 K jcn_only_AA scramb1,I_chr3L_10217325_10217959 chr3L - chr3L_10217325_10217959 chr3L_10217338_10217959 chr3L_10217960_10218059;chr3L_10217225_10217324 100.00 100.00 100.00 100.00 97.50 96.67 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 97.53 97.30 100.00 95.83 98.11 100.00 98.67 96.25 94.44 97.67 97.70 97.96 100.00 98.28 100.00 98.36 95.92 99.00 100.00 100.00 95.00 100.00 100.00 98.39 98.25 100.00 100.00 98.57 96.08 100.00 100.00 100.00 100.00 95.74 97.70 100.00 K alternative_donor beta-Spec chrX + chrX_17551567_17555021 chrX_17551571_17555021 chrX_17555022_17561265;chrX_17551418_17551566 74.13 73.08 80.77 63.46 80.00 66.67 80.43 69.44 75.00 65.00 69.57 68.12 71.05 74.47 65.71 68.35 73.53 81.25 81.13 74.24 83.33 73.33 74.29 76.47 68.18 66.67 71.43 83.33 70.83 65.00 74.07 86.67 80.00 71.23 70.00 82.86 77.78 NA 75.00 69.77 94.12 69.44 76.67 72.41 75.00 55.17 66.67 83.33 79.31 57.14 74.19 75.00 66.67 90.00 78.05 85.71 76.47 67.86 K cassette Haspin chr2RHet + chr2RHet_3200480_3234342 chr2RHet_3200480_3215266;chr2RHet_3215563_3234342 chr2RHet_3215267_3215562 chr2RHet_3200469_3200479;chr2RHet_3234343_3234575 96.00 90.00 100.00 46.43 80.00 100.00 96.30 96.77 97.14 83.33 100.00 84.00 100.00 100.00 81.82 78.79 90.00 87.50 93.75 100.00 100.00 100.00 100.00 100.00 85.71 88.89 100.00 80.00 60.00 100.00 100.00 90.91 88.89 96.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 83.33 85.71 91.67 92.31 90.91 90.00 91.67 100.00 100.00 90.91 100.00 90.91 100.00 95.00 90.48 K alternative_donor RpL18A,I_chr2R_13434492_13434554,I_chr2R_13434492_13434576 chr2R - chr2R_13434492_13434913;chr2R_13434492_13434554 chr2R_13434492_13434576 chr2R_13434392_13434491;chr2R_13434914_13434994 0.00 0.00 0.00 0.08 0.06 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.06 0.06 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.41 0.00 0.17 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.04 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.04 K mutually_exclusive par-1,EFI_chr2R_15361473_15362032,RI_chr2R_15361473_15362035,I_chr2R_15361473_15366246,I_chr2R_15362147_15365120,F_chr2R_15362147_15365138,I_chr2R_15362147_15365165,RI_chr2R_15363358_15365120,I_chr2R_15363358_15366246,I_chr2R_15365210_15370456 chr2R + chr2R_15361473_15366256,chr2R_15366371_15370456 chr2R_15361473_15365138,chr2R_15365210_15370456 chr2R_15366257_15366370 chr2R_15365139_15365209 chr2R_15361373_15361472;chr2R_15370457_15370556 4.76 4.55 2.94 0.00 3.45 0.00 5.08 0.00 2.35 0.00 0.00 4.44 13.33 0.00 3.45 0.00 0.00 0.00 4.76 3.23 4.00 17.02 5.00 5.13 10.00 3.23 7.69 8.70 15.38 6.90 4.00 0.00 12.50 2.17 10.53 8.70 5.26 4.17 5.26 7.14 20.00 4.00 0.00 8.00 10.53 9.09 3.57 22.22 3.51 6.25 5.71 0.00 10.53 6.67 5.26 10.00 5.56 0.00 K intron_retention CG5802 chr3R + chr3R_16964788_16964839 chr3R_16964787_16964788;chr3R_16964839_16964840 chr3R_16964277_16964787;chr3R_16964840_16965301 0.96 0.00 3.03 0.00 2.13 0.00 3.45 1.98 0.00 0.61 1.10 0.69 0.00 1.25 1.67 1.32 1.12 0.00 0.00 2.08 0.00 17.58 0.00 0.00 0.00 0.00 0.67 2.20 2.97 0.00 3.64 3.64 2.60 1.68 3.80 0.00 0.94 0.00 1.22 0.47 3.12 1.22 0.00 0.83 2.38 0.54 2.17 1.61 1.26 1.43 2.44 0.00 0.00 0.00 0.00 0.92 1.81 0.96 K intron_retention PNGase,I_chr2R_1906759_1906817,I_chr2R_1906899_1906977 chr2R + chr2R_1906899_1906957 chr2R_1906898_1906899;chr2R_1906957_1906958 chr2R_1906833_1906898;chr2R_1906958_1907054 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 1.51 0.00 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 K jcn_only_AD CG7713 chr3R + chr3R_13620860_13621082 chr3R_13620918_13621082 chr3R_13621083_13621361;chr3R_13620788_13620859 34.15 NA NA NA NA NA NA NA 34.15 NA NA NA NA NA NA 59.09 NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Dcp2,F_chr3L_15815909_15816023,F_chr3L_15817090_15817547 chr3L - chr3L_15815115_15815170 chr3L_15815114_15815115;chr3L_15815170_15815171 chr3L_15814221_15815114;chr3L_15815171_15815908 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24.14 2.94 0.00 0.00 0.00 0.00 5.88 73.68 0.00 NA NA 0.00 0.00 4.76 9.09 0.00 0.00 0.00 NA NA 0.00 7.69 NA NA NA NA NA 5.88 NA 3.45 NA NA NA 0.00 NA NA NA K intron_retention Actn chrX - chrX_1920943_1921316 chrX_1920942_1920943;chrX_1921316_1921317 chrX_1919808_1920942;chrX_1921317_1921453 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 7.89 1.72 0.00 0.00 0.00 0.00 3.57 0.00 1.69 2.63 4.00 0.00 0.00 0.00 10.53 0.00 1.54 0.00 0.00 0.00 0.00 0.00 1.85 2.02 0.00 0.00 1.33 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 1.47 0.00 0.00 K cassette rl,I_chr2RHet_199154_201722,I_chr2RHet_199154_207044,RI_chr2RHet_203476_203577,RI_chr2RHet_203592_207044,I_chr2RHet_232696_247338,RI_chr2RHet_240197_247338 chr2RHet + chr2RHet_199154_203348 chr2RHet_199154_200985;chr2RHet_201079_203348 chr2RHet_200986_201078 chr2RHet_199054_199153;chr2RHet_203349_203475 2.33 4.88 3.33 1.23 4.00 2.70 1.11 1.94 2.38 0.00 0.00 2.78 0.00 0.00 1.82 4.95 0.00 3.70 1.72 5.75 3.23 2.56 1.61 2.27 0.00 3.23 2.08 0.00 3.23 0.00 1.72 4.55 10.53 5.62 5.00 0.00 4.17 0.00 7.69 1.69 3.45 2.44 2.33 0.00 5.56 3.92 0.00 0.00 1.92 2.94 1.47 0.00 2.94 0.00 2.00 6.52 2.56 2.94 K intron_retention E(bx),I_chr3L_240127_240176,I_chr3L_246324_246699 chr3L - chr3L_240111_240176 chr3L_240110_240111;chr3L_240176_240177 chr3L_240027_240110;chr3L_240177_240276 80.00 73.81 71.21 81.25 85.71 89.19 61.40 81.40 80.56 80.00 84.62 77.88 78.43 79.66 83.08 84.71 77.78 80.00 81.25 79.38 73.58 79.37 85.26 77.78 87.76 90.16 90.24 90.91 90.14 86.11 81.67 87.04 88.89 79.00 78.57 86.57 83.58 74.29 78.43 70.19 88.14 83.33 83.33 82.46 80.00 73.53 73.68 71.60 81.67 79.07 77.03 74.29 76.32 75.86 85.33 77.27 78.95 82.88 K intron_retention lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6394546_6419543,I_chr2R_6394664_6395833,I_chr2R_6397642_6398119,RI_chr2R_6403557_6403850,I_chr2R_6403557_6406705,I_chr2R_6404486_6419543,R_chr2R_6408775_6419537,I_chr2R_6409616_6419543,I_chr2R_6413368_6414281,I_chr2R_6419625_6419686,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6380091_6419543 chr2R_6380090_6380091;chr2R_6419543_6419544 chr2R_6380012_6380090;chr2R_6419544_6419624 32.26 25.93 33.33 36.73 31.03 30.56 41.86 30.77 41.27 41.67 35.71 29.31 47.83 43.33 28.26 55.56 30.77 36.67 26.47 28.05 18.52 15.15 53.12 44.44 47.62 55.17 37.50 65.00 18.92 20.00 33.33 26.47 20.27 27.45 32.26 44.00 50.00 34.62 31.91 27.50 16.67 34.48 33.33 51.85 16.22 17.39 19.23 27.14 33.78 20.00 41.18 47.37 21.88 30.00 22.45 32.26 35.00 14.63 K intron_retention l(3)73Ah chr3L + chr3L_16582058_16582119 chr3L_16582057_16582058;chr3L_16582119_16582120 chr3L_16581734_16582057;chr3L_16582120_16582272 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 2.50 0.00 0.00 0.00 0.00 3.53 0.00 1.47 0.00 0.00 0.00 0.00 6.52 4.35 0.97 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 4.17 0.00 1.83 0.00 8.33 0.00 0.00 1.43 2.70 0.00 2.70 0.00 0.00 0.00 1.89 2.78 2.94 1.41 0.00 0.00 K intron_retention CG10166,CG10165 chr2L - chr2L_19526164_19526220 chr2L_19526163_19526164;chr2L_19526220_19526221 chr2L_19525953_19526163;chr2L_19526221_19526347 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 5.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 K jcn_only_AA CG17002 chr2R + chr2R_2875771_2876087 chr2R_2875771_2876075 chr2R_2875292_2875770;chr2R_2876088_2876423 74.60 79.45 77.55 86.67 84.38 65.91 74.60 81.82 76.70 NA NA 65.28 80.77 60.61 77.78 73.81 75.61 79.07 78.57 75.41 80.00 72.73 75.65 76.06 70.73 75.00 66.67 75.00 68.57 73.58 74.36 58.70 69.23 76.00 79.63 72.73 71.43 68.83 71.59 75.95 84.00 77.63 78.12 82.22 66.10 63.16 65.52 74.29 80.00 73.24 85.29 70.00 71.91 73.74 70.00 53.95 72.95 81.13 K intron_retention raw,I_chr2L_8712599_8712673,I_chr2L_8735201_8735693 chr2L - chr2L_8735201_8735725 chr2L_8735200_8735201;chr2L_8735725_8735726 chr2L_8735101_8735200;chr2L_8735726_8735747 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA NA NA NA 100.00 NA 100.00 NA NA 100.00 100.00 NA NA 100.00 91.67 100.00 NA NA NA NA NA NA NA NA 100.00 100.00 NA 83.33 NA NA NA NA 100.00 NA NA NA NA NA NA 88.89 100.00 92.86 100.00 NA NA NA NA NA NA K intron_retention RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817,snoRNA:Psi28S-2444 chr2R + chr2R_15330246_15330292 chr2R_15330245_15330246;chr2R_15330292_15330293 chr2R_15330177_15330245;chr2R_15330293_15330304 84.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA 100.00 89.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 70.00 K alternative_donor Bap,I_chrX_19625275_19625407 chrX + chrX_19625123_19625407 chrX_19625275_19625407 chrX_19625408_19625507;chrX_19625014_19625122 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Nipped-B,I_chr2R_583116_587893,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_583116_586563 chr2R_583116_586007;chr2R_586502_586563 chr2R_586008_586501 chr2R_583016_583115;chr2R_586564_586656 99.03 100.00 98.91 94.20 98.31 98.39 97.71 99.48 99.10 100.00 100.00 100.00 99.05 98.95 100.00 100.00 100.00 98.48 99.16 98.87 98.41 100.00 100.00 98.75 98.53 98.41 99.00 94.52 93.44 100.00 99.32 98.39 100.00 99.48 98.72 98.68 98.44 100.00 100.00 98.37 97.96 98.88 100.00 99.03 96.67 98.55 100.00 99.01 99.49 98.00 99.12 100.00 97.22 100.00 100.00 100.00 100.00 98.61 K jcn_only_AA CG1427,RI_chr3R_1427548_1427635 chr3R + chr3R_1427585_1427681 chr3R_1427585_1427635 chr3R_1427482_1427584;chr3R_1427682_1427704 97.38 100.00 NA NA NA NA NA 100.00 95.65 NA NA 94.55 88.46 NA 86.36 96.43 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 96.15 95.00 100.00 NA 100.00 95.24 92.59 100.00 100.00 93.33 NA NA 96.77 95.00 97.67 97.47 NA 98.00 NA 100.00 97.30 93.02 100.00 96.97 98.00 96.55 97.30 100.00 100.00 100.00 90.91 96.15 96.97 97.06 K intron_retention Keap1 chr3R - chr3R_12901908_12901966 chr3R_12901907_12901908;chr3R_12901966_12901967 chr3R_12901225_12901907;chr3R_12901967_12902224 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA NA 0.00 12.50 NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9389907 chr2R_9389596_9389597;chr2R_9389907_9389908 chr2R_9389497_9389596;chr2R_9389908_9389954 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 95.00 98.00 96.00 95.65 96.88 100.00 100.00 100.00 97.37 94.34 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 100.00 93.33 100.00 100.00 100.00 100.00 96.72 100.00 100.00 100.00 100.00 100.00 100.00 98.41 100.00 100.00 100.00 94.74 92.31 97.14 100.00 100.00 100.00 K intron_retention bun,I_chr2L_12458224_12458352,I_chr2L_12458224_12460889,I_chr2L_12477167_12504078,I_chr2L_12477167_12507485,I_chr2L_12520177_12536274,I_chr2L_12537393_12537634,RI_chr2L_12540901_12546409 chr2L - chr2L_12458224_12477114 chr2L_12458223_12458224;chr2L_12477114_12477115 chr2L_12458124_12458223;chr2L_12477115_12477166 0.00 0.00 0.00 1.22 3.33 0.00 2.50 0.00 0.00 0.00 0.00 1.85 0.00 1.82 0.00 3.26 0.00 0.00 3.39 1.20 0.00 1.35 1.49 0.00 0.00 0.00 0.00 29.17 0.00 0.00 0.00 0.00 0.00 3.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 2.94 0.00 0.00 K intron_retention Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8107174_8107237 chr2L_8107173_8107174;chr2L_8107237_8107238 chr2L_8107066_8107173;chr2L_8107238_8107425 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.90 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pkc98E chr3R + chr3R_24865713_24866817 chr3R_24865712_24865713;chr3R_24866817_24866818 chr3R_24865708_24865712;chr3R_24866818_24867147 69.23 NA NA NA NA NA 90.00 70.00 69.23 NA NA 63.64 NA NA NA NA NA NA NA 61.54 NA 25.00 NA NA NA NA NA NA NA 63.64 NA NA NA NA NA NA 69.23 NA NA 87.50 NA 88.89 NA NA NA NA NA NA 70.00 NA NA NA NA NA NA NA NA NA K intron_retention CG12404,I_chr2L_12995561_12997461,I_chr2L_13003716_13003971 chr2L - chr2L_12997924_12999726 chr2L_12997923_12997924;chr2L_12999726_12999727 chr2L_12997813_12997923;chr2L_12999727_12999761 1.30 0.00 0.00 1.30 0.00 0.00 6.90 5.19 5.33 0.00 0.00 3.33 0.00 5.26 1.79 0.00 5.26 5.00 0.00 3.26 0.00 1.79 6.25 5.41 0.00 0.00 0.00 12.00 7.69 4.88 3.17 5.41 0.00 2.78 0.00 0.00 0.00 7.69 0.00 3.08 3.03 1.06 2.38 0.00 0.00 1.47 0.00 4.62 2.35 0.00 2.56 0.00 0.00 0.00 3.77 0.00 1.79 0.93 K cassette NaCP60E,I_chr2R_20798977_20799775,I_chr2R_20805053_20805170 chr2R + chr2R_20798977_20799775 chr2R_20798977_20799521;chr2R_20799697_20799775 chr2R_20799522_20799696 chr2R_20798938_20798976;chr2R_20799776_20799875 100.00 100.00 80.00 90.00 NA NA 90.91 100.00 100.00 NA 100.00 100.00 87.50 100.00 100.00 100.00 100.00 83.33 100.00 100.00 100.00 NA NA NA NA 83.33 100.00 80.00 NA 100.00 100.00 NA 85.71 100.00 NA NA 100.00 NA 83.33 100.00 NA 100.00 100.00 NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA 87.50 NA NA 100.00 K intron_retention CG8908,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16156574_16156624 chr2R_16156573_16156574;chr2R_16156624_16156625 chr2R_16156388_16156573;chr2R_16156625_16156651 0.00 NA NA NA NA NA 0.00 NA 5.26 NA NA NA 0.00 NA NA 3.12 NA 0.00 NA 3.57 NA 3.33 0.00 0.00 NA NA NA NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 K intron_retention CG7791 chr2R - chr2R_1647619_1647682 chr2R_1647618_1647619;chr2R_1647682_1647683 chr2R_1647553_1647618;chr2R_1647683_1647751 15.10 13.79 13.64 27.27 8.70 4.35 14.29 22.22 9.52 9.09 19.05 11.90 7.14 17.65 15.38 9.52 22.22 22.22 13.64 6.52 16.67 21.05 18.00 13.64 33.33 17.39 24.14 26.67 34.62 21.43 47.62 22.22 12.00 7.41 20.59 42.86 22.22 17.78 18.64 16.22 NA 10.00 7.69 13.95 8.33 10.71 12.82 17.65 16.67 17.24 14.81 13.79 4.00 10.00 17.39 5.00 4.17 8.70 K jcn_only_AD Pcmt chr3R - chr3R_1378768_1378992 chr3R_1378768_1378947 chr3R_1378542_1378767;chr3R_1378993_1379397 3.33 2.72 1.65 4.00 3.08 3.03 3.45 3.60 4.14 3.33 3.12 2.49 7.45 5.19 3.39 5.33 4.69 4.65 5.19 3.00 1.22 12.40 1.88 1.62 1.09 5.66 3.55 3.09 7.95 2.97 2.54 3.73 7.61 4.58 1.08 3.01 1.73 2.54 1.87 3.02 3.97 4.40 5.26 3.45 5.88 2.76 2.65 2.96 5.66 0.98 3.85 3.03 4.32 0.44 2.78 2.04 3.54 6.50 K alternative_acceptor Pfrx,I_chrX_19390217_19400515,RI_chrX_19390217_19403850,RI_chrX_19392914_19400518,RI_chrX_19399882_19400518,I_chrX_19400112_19400515,RI_chrX_19400112_19400518,I_chrX_19400271_19400518 chrX + chrX_19398571_19400518 chrX_19398571_19400515 chrX_19398435_19398570;chrX_19400519_19400615 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21128063_21128778 chr2L_21128063_21128739 chr2L_21127850_21128062;chr2L_21128779_21129082 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention ik2 chr2L + chr2L_20678141_20678200 chr2L_20678140_20678141;chr2L_20678200_20678201 chr2L_20678016_20678140;chr2L_20678201_20679308 0.00 0.00 0.00 5.13 0.00 6.67 2.86 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 3.57 9.09 10.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Dsor1,chrX_9141950_9142262.0,chrX_9142356_9142574.0 chrX + chrX_9141687_9142574 chrX_9141942_9142574 chrX_9142575_9143214;chrX_9141618_9141686 100.00 100.00 NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 NA NA N intron_retention AnnIX,I_chr3R_16895383_16895999 chr3R + chr3R_16893222_16896445 chr3R_16893221_16893222;chr3R_16896445_16896446 chr3R_16893168_16893221;chr3R_16896446_16896495 100.00 100.00 100.00 26.23 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention RpL22,noncoding_21234,snoRNA:Psi18S-531,snoRNA:Psi28S-2179 chrX - chrX_657019_658334 chrX_657018_657019;chrX_658334_658335 chrX_656593_657018;chrX_658335_658556 100.00 100.00 100.00 98.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 97.37 96.30 100.00 95.24 100.00 100.00 100.00 97.56 100.00 100.00 100.00 96.88 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 98.46 95.45 98.04 95.65 100.00 100.00 100.00 100.00 90.91 100.00 96.97 100.00 92.86 95.24 100.00 96.97 97.67 97.14 98.15 K alternative_donor Vha100-2 chr3R - chr3R_14219132_14222507 chr3R_14219132_14222434 chr3R_14218994_14219131;chr3R_14222508_14222727 25.00 NA 30.77 40.48 25.00 31.25 20.59 36.36 21.88 NA 41.67 28.57 13.04 25.00 31.58 24.14 30.00 35.29 26.09 26.47 25.00 20.00 19.05 30.00 NA 23.81 20.00 NA NA 30.00 5.88 NA 35.71 21.43 NA 20.00 NA NA 20.00 14.29 NA 28.95 17.65 NA NA NA NA NA 20.00 NA 7.14 NA 16.67 NA 25.00 NA 25.00 NA K jcn_only_AD Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046104;chr3L_16045316_16046104;chr3L_16045277_16046104 chr3L_16045275_16046104 chr3L_16046105_16046204;chr3L_16045216_16045250 32.31 38.64 37.04 26.73 39.47 32.31 41.25 29.91 41.67 19.35 47.73 34.86 39.68 36.76 20.90 33.71 36.84 52.63 31.33 28.95 40.74 23.53 31.51 36.96 36.84 33.33 25.42 30.00 35.94 20.27 24.32 17.65 24.39 32.54 26.09 39.53 38.10 19.44 36.11 26.37 30.95 32.50 32.79 29.82 25.64 31.37 26.92 23.68 41.82 45.83 28.85 44.44 24.00 NA 40.24 25.00 NA 16.67 K alternative_donor CG1544 chr3R + chr3R_27022696_27024892 chr3R_27022858_27024892 chr3R_27024893_27025010;chr3R_27022664_27022695 100.00 100.00 92.31 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 95.24 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 93.75 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 K jcn_only_AD scu,RhoGAP16F chrX + chrX_17987656_17989117;chrX_17988131_17989117;chrX_17988127_17989117 chrX_17987638_17989117 chrX_17989118_17990486;chrX_17987544_17987637 3.68 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 2.82 NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA 4.55 NA NA NA NA NA NA NA NA NA K intron_retention Pde8,CG42241,I_chr2R_19563512_19564565 chr2R + chr2R_19559612_19561808 chr2R_19559611_19559612;chr2R_19561808_19561809 chr2R_19559499_19559611;chr2R_19561809_19561865 1.61 2.94 1.56 1.80 3.41 0.93 5.56 1.33 2.36 0.00 4.76 2.23 1.23 0.00 3.48 0.00 3.23 6.25 3.12 2.83 0.00 1.75 1.11 3.43 3.23 4.20 4.06 0.00 3.80 1.14 1.40 1.09 1.77 1.12 1.57 1.15 1.55 0.00 2.49 2.12 2.96 1.63 2.35 1.23 1.59 2.38 0.00 2.12 2.45 2.13 1.10 0.00 0.00 1.23 1.37 0.00 1.45 1.61 K jcn_only_AD beta-Spec chrX + chrX_17551567_17555021 chrX_17551571_17555021 chrX_17555022_17561265;chrX_17551418_17551566 84.09 83.33 87.50 76.36 90.00 79.25 88.18 81.82 83.97 80.00 82.69 78.91 82.14 85.32 77.78 80.00 84.42 89.04 88.80 83.10 90.91 85.32 84.21 85.00 81.13 77.59 83.08 90.32 82.46 77.27 83.47 92.31 89.00 82.42 81.32 91.11 85.00 NA 84.62 81.82 95.74 80.38 85.51 83.82 86.21 71.88 79.41 91.21 87.22 73.33 84.51 86.84 77.78 92.31 86.32 91.67 85.37 81.25 K alternative_donor Rga,I_chr3R_1436346_1436552,I_chr3R_1436346_1437602,I_chr3R_1436346_1437897,I_chr3R_1437726_1437791,Spec2 chr3R - chr3R_1436346_1436552;chr3R_1436346_1437791 chr3R_1436346_1437897 chr3R_1436246_1436345;chr3R_1437898_1437963 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 1.79 0.00 0.00 0.00 0.00 0.00 1.49 0.00 1.56 0.88 1.39 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17660 chr2L - chr2L_1707489_1707563 chr2L_1707488_1707489;chr2L_1707563_1707564 chr2L_1707132_1707488;chr2L_1707564_1707998 93.94 81.82 96.15 95.12 94.74 91.30 85.42 100.00 94.74 75.00 92.00 93.88 95.65 100.00 96.15 90.62 100.00 95.65 96.77 100.00 95.83 89.29 93.94 96.55 87.50 95.24 88.57 85.00 95.45 88.00 96.15 95.83 82.76 84.62 94.74 90.00 87.10 95.24 95.83 85.29 92.86 93.88 95.83 92.31 87.50 97.22 91.67 91.30 94.74 96.43 92.86 94.12 89.47 89.47 91.67 96.97 90.00 97.44 K jcn_only_AD CG1646,RI_chr3R_24638061_24638116,RI_chr3R_24638209_24638280,I_chr3R_24641816_24641874 chr3R + chr3R_24637877_24638116 chr3R_24638061_24638116 chr3R_24638117_24638208;chr3R_24637841_24637876 1.05 0.00 4.35 0.77 1.39 1.54 1.75 2.22 0.00 0.00 1.30 0.57 0.00 3.23 1.05 2.60 1.59 0.00 1.25 0.00 1.28 2.78 0.00 0.00 0.00 1.14 1.92 0.00 0.92 4.17 0.00 1.72 1.42 0.92 0.00 3.23 0.00 0.00 0.00 1.38 0.00 0.55 3.28 2.04 1.75 0.00 2.35 0.88 0.00 2.04 3.80 0.00 3.12 0.00 1.61 0.00 3.23 0.00 K intron_retention CG17646,E_chr2L_1749256_1749517 chr2L + chr2L_1745362_1745718 chr2L_1745361_1745362;chr2L_1745718_1745719 chr2L_1745264_1745361;chr2L_1745719_1746029 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 5.56 NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2393243 chrX_2388671_2389073;chrX_2389272_2389644;chrX_2389762_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2393243 chrX_2389074_2389271;chrX_2389645_2389761;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664 chrX_2388641_2388670;chrX_2393244_2393291 25.00 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention I_chr2R_4783150_4783708,Ggamma1,noncoding_5300 chr2R + chr2R_4789028_4789879 chr2R_4789027_4789028;chr2R_4789879_4789880 chr2R_4789007_4789027;chr2R_4789880_4790224 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.90 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG31033,RI_chr3R_25658089_25658914 chr3R - chr3R_25660345_25660467 chr3R_25660344_25660345;chr3R_25660467_25660468 chr3R_25660083_25660344;chr3R_25660468_25660786 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ctr1A,I_chrX_6557804_6559032,I_chrX_6558480_6559032 chrX + chrX_6556375_6559032 chrX_6556374_6556375;chrX_6559032_6559033 chrX_6556311_6556374;chrX_6559033_6559111 0.00 0.00 0.00 0.00 NA 0.00 3.33 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8232 chr2R + chr2R_4818156_4818214 chr2R_4818155_4818156;chr2R_4818214_4818215 chr2R_4818155_4818155;chr2R_4818215_4818510 4.35 0.00 7.69 2.94 7.41 0.00 4.00 0.00 5.71 0.00 0.00 6.67 0.00 0.00 6.06 7.84 0.00 6.25 4.44 4.55 4.76 5.71 4.26 0.00 0.00 0.00 6.67 NA 19.05 9.68 13.51 15.00 12.50 4.84 5.71 13.33 0.00 0.00 0.00 3.57 16.67 2.86 8.33 0.00 0.00 6.67 0.00 12.50 2.78 6.90 0.00 6.25 0.00 0.00 1.72 7.41 0.00 8.00 K jcn_only_AD CG1399,I_chr2R_3574133_3574191 chr2R - chr2R_3565240_3565502;chr2R_3565240_3565310;chr2R_3565240_3566074;chr2R_3565240_3565403;chr2R_3565240_3565374 chr2R_3565240_3565323 chr2R_3564840_3565239 42.50 45.45 61.54 15.00 29.03 31.25 29.23 21.74 45.45 61.22 58.49 39.02 61.90 29.03 54.05 41.67 36.67 25.00 41.03 47.44 43.40 54.02 27.50 58.00 51.85 42.31 50.00 48.57 35.71 37.29 49.12 40.00 27.54 28.85 36.84 34.62 64.15 45.45 43.48 37.50 38.98 36.36 59.26 46.67 43.59 49.15 57.14 45.10 40.00 43.48 40.98 51.28 11.11 46.34 50.00 42.50 23.81 21.62 K alternative_donor CG7192,RI_chrX_17993756_17994097 chrX - chrX_17993756_17995125 chrX_17993756_17994097 chrX_17993656_17993755;chrX_17995126_17995239 2.00 1.61 2.17 3.28 1.67 2.00 3.17 2.60 1.92 1.92 2.70 2.63 2.56 2.70 1.54 2.50 2.38 2.56 2.56 2.82 2.33 4.44 1.09 1.00 0.00 2.08 2.60 3.23 2.50 1.41 1.75 2.70 2.99 2.90 1.82 1.79 0.00 0.00 1.23 1.92 4.17 0.78 2.33 1.72 2.17 1.43 0.00 2.00 2.70 1.64 0.00 2.00 2.27 1.85 1.92 0.00 1.75 4.08 K jcn_only_AA bip2,RI_chr4_481674_487126,RI_chr4_483128_487126,RI_chr4_486609_487126 chr4 - chr4_485942_487126;chr4_485855_487126 chr4_486609_487126 chr4_487127_487226;chr4_485750_485854 3.03 0.00 7.89 19.05 4.35 NA 1.41 6.67 0.00 NA 0.00 9.21 0.00 0.00 8.11 0.00 3.70 34.21 0.00 4.11 0.00 NA 0.00 0.00 NA 5.00 0.00 NA NA NA 6.82 NA NA 3.17 NA NA 2.38 0.00 5.71 0.00 NA 3.17 3.33 0.00 NA 4.35 4.35 NA 1.54 NA 3.03 3.45 NA NA 0.00 NA NA NA K intron_retention C1GalTA,I_chr2L_8945896_8950977 chr2L - chr2L_8945535_8950769 chr2L_8945534_8945535;chr2L_8950769_8950770 chr2L_8945358_8945534;chr2L_8950770_8951200 63.64 63.64 55.56 80.00 NA NA 57.89 75.00 70.97 NA NA NA NA 60.00 70.00 56.25 41.67 NA 72.73 80.00 NA NA NA NA NA 60.00 NA NA NA NA NA NA NA 76.47 NA NA NA NA NA NA NA 66.67 63.64 NA NA NA NA NA 55.00 NA NA NA NA NA NA NA NA NA K intron_retention RpL12,E_chr2R_19948229_19948395,I_chr2R_19948517_19948682 chr2R + chr2R_19948273_19948335 chr2R_19948272_19948273;chr2R_19948335_19948336 chr2R_19948204_19948272;chr2R_19948336_19948410 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.03 0.00 0.00 0.03 0.00 0.00 0.03 0.02 0.00 0.04 0.00 0.03 0.02 0.01 0.02 0.02 0.00 0.02 0.10 0.24 0.20 0.00 0.02 0.00 0.00 0.00 0.02 0.04 0.00 0.00 0.02 0.02 0.03 0.02 0.00 0.00 0.00 0.02 0.01 0.05 0.05 0.04 0.08 0.00 0.02 0.02 0.00 0.03 0.05 0.03 K jcn_only_AA Zyx102EF,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1081261_1081366;chr4_1081286_1081366 chr4_1081280_1081366 chr4_1081367_1081379;chr4_1081180_1081260 20.00 NA NA NA NA NA 20.00 19.23 10.87 NA NA 10.00 NA NA NA 19.44 NA NA NA 28.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 20.83 NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA K intron_retention CG34413,I_chr2R_20770882_20770948,F_chr2R_20770891_20770943,I_chr2R_20771136_20772048,I_chr2R_20773500_20774745 chr2R + chr2R_20770738_20770800 chr2R_20770737_20770738;chr2R_20770800_20770801 chr2R_20770600_20770737;chr2R_20770801_20770881 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.67 6.56 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor hppy,I_chr2R_15066378_15066915,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15066378_15066881;chr2R_15066378_15066915 chr2R_15066378_15067003 chr2R_15066360_15066377;chr2R_15067004_15067015 62.02 57.89 58.33 44.00 62.50 66.67 34.48 35.00 50.00 50.00 50.00 58.33 33.33 42.86 66.67 55.56 58.82 62.50 66.67 71.43 42.86 75.00 68.97 60.00 61.11 61.54 52.63 77.78 83.33 57.14 60.00 NA 53.85 47.83 61.11 70.59 63.16 73.68 77.78 75.00 70.00 52.17 60.00 83.64 55.56 80.00 70.59 86.21 64.10 50.00 65.62 66.67 76.92 NA 63.16 75.00 NA 75.00 K intron_retention I_chr3R_11826508_11826910,GATAe chr3R + chr3R_11844318_11844380 chr3R_11844317_11844318;chr3R_11844380_11844381 chr3R_11843987_11844317;chr3R_11844381_11844611 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 91.67 NA 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K alternative_donor CG13295,I_chr3L_6067590_6067643 chr3L - chr3L_6067590_6067647 chr3L_6067590_6067643 chr3L_6067490_6067589;chr3L_6067648_6067743 0.00 NA NA 0.00 NA 0.00 0.00 0.00 4.55 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 3.12 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 2.70 NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA NA NA NA K alternative_donor ena chr2R + chr2R_15029352_15029711;chr2R_15029276_15029711 chr2R_15029330_15029711 chr2R_15029712_15029859;chr2R_15029150_15029275 14.89 14.81 14.29 25.42 16.67 28.12 11.94 19.67 14.44 10.00 13.04 29.67 16.22 17.39 31.71 9.86 12.20 16.00 22.45 24.36 20.00 13.33 12.20 9.38 11.11 20.00 4.44 8.33 30.00 13.79 17.02 16.67 9.52 20.27 12.50 10.81 14.81 11.11 13.64 12.50 15.38 22.06 16.28 16.13 25.00 19.05 11.11 13.64 15.38 11.11 14.89 17.24 10.53 15.38 18.87 17.39 10.00 11.76 K jcn_only_AD I_chrX_15223901_15223968,HDAC6,I_chrX_15232958_15233665 chrX + chrX_15232699_15232869 chrX_15232738_15232869 chrX_15232870_15232877;chrX_15232108_15232698 100.00 NA 100.00 NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 100.00 100.00 NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA 95.45 100.00 NA NA 95.65 NA 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 100.00 96.77 100.00 100.00 NA 100.00 90.91 95.24 NA 100.00 97.30 N intron_retention MAPk-Ak2,RI_chrX_5655618_5656137,I_chrX_5656715_5657427,I_chrX_5656715_5657893,I_chrX_5656715_5657974 chrX - chrX_5656678_5658126 chrX_5656677_5656678;chrX_5658126_5658127 chrX_5656615_5656677;chrX_5658127_5658138 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 69.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA kuz,E_chr2L_13550294_13551106,I_chr2L_13550421_13550984,CE_chr2L_13558833_13594255,I_chr2L_13636762_13637287 chr2L + chr2L_13550421_13551141 chr2L_13550421_13550984 chr2L_13550321_13550420;chr2L_13551142_13551156 6.92 NA NA 4.76 NA NA NA 9.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RpL3,E_chr3R_7047964_7050565,I_chr3R_7049970_7050189,snoRNA:Me28S-G2017 chr3R + chr3R_7049970_7050212 chr3R_7049969_7049970;chr3R_7050212_7050213 chr3R_7049870_7049969;chr3R_7050213_7050289 0.09 0.05 0.12 0.11 0.15 0.15 0.08 0.14 0.10 0.08 0.08 0.11 0.14 0.13 0.12 0.00 0.11 0.03 0.08 0.08 0.06 0.10 0.10 0.09 0.05 0.03 0.18 0.56 0.08 0.04 0.11 0.07 0.10 0.13 0.07 0.00 0.08 0.10 0.05 0.09 0.06 0.07 0.16 0.00 0.07 0.09 0.11 0.09 0.22 0.16 0.09 0.14 0.09 0.07 0.20 0.10 0.05 0.10 K jcn_only_AD Psn,RI_chr3L_20430213_20430358 chr3L + chr3L_20427346_20427647;chr3L_20427445_20427647 chr3L_20427403_20427647 chr3L_20427648_20427812;chr3L_20427187_20427345 80.09 81.71 78.20 79.15 77.22 80.22 86.70 74.25 82.01 78.79 78.21 80.81 69.17 78.29 76.34 85.62 69.57 85.31 77.08 80.18 84.14 85.17 79.73 79.19 79.45 77.78 78.88 76.15 61.11 83.54 72.85 75.34 80.00 78.57 75.00 83.23 85.91 80.09 82.82 77.96 82.50 81.04 85.82 83.13 81.33 80.25 79.22 86.24 81.06 84.34 78.98 86.13 84.80 83.20 80.11 79.92 79.30 82.93 K alternative_donor E(bx),I_chr3L_239186_239264,I_chr3L_246324_246699 chr3L - chr3L_239186_239264 chr3L_239186_239242 chr3L_239086_239185;chr3L_239265_239329 98.15 100.00 98.46 98.91 97.78 98.15 98.70 98.96 99.10 100.00 97.50 97.67 100.00 98.08 98.44 98.81 95.45 98.21 98.67 97.75 98.04 96.67 95.71 100.00 97.22 100.00 98.25 100.00 97.78 97.83 94.03 97.62 97.06 95.05 97.30 96.23 100.00 97.37 98.25 98.00 96.67 98.10 96.23 98.18 95.74 98.25 97.22 98.68 99.13 100.00 98.51 100.00 96.00 100.00 98.57 97.96 97.14 100.00 K intron_retention AGO2 chr3L + chr3L_15551218_15551349 chr3L_15551217_15551218;chr3L_15551349_15551350 chr3L_15550832_15551217;chr3L_15551350_15551438 0.00 0.00 0.00 0.74 0.00 0.00 0.73 0.99 0.88 0.00 1.05 0.67 0.55 0.00 0.00 0.55 0.00 0.00 0.00 0.19 0.00 0.00 0.55 0.36 0.00 0.00 0.30 0.00 0.61 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.95 0.51 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 K cassette CG11168,I_chr3R_20745770_20745849,I_chr3R_20745983_20746038 chr3R + chr3R_20745770_20746038 chr3R_20745770_20745842;chr3R_20745962_20746038 chr3R_20745843_20745961 chr3R_20745670_20745769;chr3R_20746039_20746053 25.00 NA NA NA NA NA NA 14.29 NA NA NA 50.00 NA NA NA NA NA NA NA 30.00 NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA 25.00 NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA 15.38 K intron_retention Syn1,I_chr3L_21753613_21754057 chr3L - chr3L_21741302_21753130 chr3L_21741301_21741302;chr3L_21753130_21753131 chr3L_21741092_21741301;chr3L_21753131_21753615 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 6.25 NA 0.00 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 6.67 0.00 0.00 8.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 2.94 0.00 0.00 0.00 0.00 0.00 NA 2.70 0.00 5.88 0.00 0.00 0.00 NA 4.35 0.00 0.00 14.29 0.00 0.00 0.00 1.56 K jcn_only_AA I_chr2R_17169674_17170491,CG10069,I_chr2R_17169897_17170495,I_chr2R_17170432_17170491,I_chr2R_17171765_17171886 chr2R + chr2R_17169897_17169960;chr2R_17169897_17170491 chr2R_17169897_17170495 chr2R_17169889_17169896 1.47 2.17 4.41 2.38 0.00 1.47 2.27 1.56 1.08 2.63 2.50 1.75 3.92 0.00 0.00 1.39 0.00 2.27 0.00 0.00 0.00 0.00 1.25 2.35 1.85 0.00 1.45 0.00 1.11 3.03 1.56 5.26 1.09 1.05 1.85 2.22 2.75 1.41 0.00 2.53 0.00 2.73 2.50 1.72 2.08 0.00 0.00 1.55 1.96 0.00 1.22 0.00 5.45 0.00 1.72 0.00 2.08 1.20 K intron_retention CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9903942_9904003 chr2L_9903941_9903942;chr2L_9904003_9904004 chr2L_9903379_9903941;chr2L_9904004_9904216 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 1.10 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA cerv,RI_chrX_15471783_15471843 chrX - chrX_15471783_15471843 chrX_15471799_15471843 chrX_15471844_15471943;chrX_15471683_15471782 73.87 NA NA NA NA NA 78.57 80.00 NA NA NA 75.00 NA NA NA 59.09 NA NA NA 80.65 NA NA 57.69 82.86 NA NA NA NA NA NA 30.77 NA NA 75.00 NA NA NA NA NA NA NA 65.38 NA NA NA 60.87 NA NA 80.00 NA NA NA NA NA NA 72.73 57.14 NA N multi_cassette Slip1,RI_chr4_684967_689045,I_chr4_685717_686576,RI_chr4_685717_689045,RI_chr4_687548_689045 chr4 + chr4_684967_686576 chr4_684967_685613;chr4_685932_686085;chr4_686263_686576 chr4_685614_685931;chr4_686086_686262 chr4_684914_684966;chr4_686577_686676 27.78 NA NA NA NA NA NA NA NA NA NA NA 55.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG40045,RI_chr3L_24023955_24028531,RI_chr3L_24023958_24028536,I_chr3L_24024771_24028531,I_chr3L_24025959_24028531,I_chr3L_24028601_24028670 chr3L + chr3L_24024039_24028531 chr3L_24024038_24024039;chr3L_24028531_24028532 chr3L_24024032_24024038;chr3L_24028532_24028600 42.86 NA NA 38.46 NA NA 27.78 42.86 42.86 NA NA 46.15 NA NA NA 42.86 NA NA NA 56.25 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA 58.33 NA NA NA NA NA 24.32 NA NA NA NA NA NA NA NA 65.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG3883 chr2L - chr2L_815413_815474 chr2L_815422_815474 chr2L_815475_815878;chr2L_815275_815412 87.50 NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA 88.89 87.50 NA NA NA NA 75.00 85.71 NA NA NA NA NA NA 100.00 70.00 90.00 87.50 NA NA NA 87.50 NA NA NA 92.31 66.67 NA 87.50 NA NA NA NA NA NA 83.33 K jcn_only_AD CG8468 chr2R + chr2R_10107616_10108112;chr2R_10107548_10108112;chr2R_10107621_10108112 chr2R_10107651_10108112 chr2R_10108113_10108270;chr2R_10107405_10107547 2.16 4.76 1.09 3.20 4.59 4.12 3.29 3.87 3.06 1.72 4.48 0.63 0.77 3.30 2.35 5.00 4.35 2.44 1.99 4.78 2.72 2.35 1.22 2.60 3.90 6.00 3.17 1.94 0.00 0.29 1.87 1.61 0.37 2.33 2.30 3.25 4.80 2.08 5.80 1.08 0.00 1.20 4.05 1.69 1.14 1.50 1.13 0.25 1.63 0.00 2.16 3.66 0.61 1.02 3.33 1.84 1.80 1.83 N jcn_only_AD RhoGAP18B chrX - chrX_19038625_19040000 chrX_19038625_19038713 chrX_19038597_19038624;chrX_19040001_19040175 0.00 38.46 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41.25 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 45.24 0.00 28.26 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention rl,I_chr2RHet_199154_201722,I_chr2RHet_199154_207044,RI_chr2RHet_203476_203577,RI_chr2RHet_203592_207044,I_chr2RHet_232696_247338,RI_chr2RHet_240197_247338 chr2RHet + chr2RHet_198760_198981 chr2RHet_198759_198760;chr2RHet_198981_198982 chr2RHet_198753_198759;chr2RHet_198982_199153 88.89 87.50 88.89 88.24 NA 87.50 89.74 88.89 80.00 NA NA 95.65 90.00 85.71 87.50 75.00 NA NA 93.75 95.00 50.00 NA 100.00 NA NA 88.89 100.00 NA NA NA 87.50 NA NA 85.71 NA 100.00 NA NA NA 80.00 NA 81.48 77.78 92.31 NA NA NA NA 86.67 NA 91.67 100.00 NA NA 90.00 87.50 88.89 NA K alternative_acceptor CG17233,I_chr3L_20232803_20232962,RI_chr3L_20232898_20232962 chr3L - chr3L_20232648_20232962;chr3L_20232645_20232962;chr3L_20232711_20232962 chr3L_20232714_20232962 chr3L_20232963_20233016;chr3L_20232147_20232644 57.14 37.50 58.33 76.92 40.00 53.85 54.55 55.17 64.00 83.33 55.56 71.43 45.45 40.00 52.38 54.55 57.14 66.67 42.86 68.29 50.00 57.69 67.57 61.54 78.57 38.46 69.57 62.50 73.33 64.00 58.33 76.92 60.00 46.67 53.33 52.00 71.43 28.57 60.00 59.26 69.23 57.89 53.85 50.00 50.00 63.64 50.00 60.87 56.10 90.48 42.86 42.11 82.61 33.33 40.00 36.84 57.14 54.17 N intron_retention CG30193,CG30190 chr2R + chr2R_18815153_18817321 chr2R_18815152_18815153;chr2R_18817321_18817322 chr2R_18815039_18815152;chr2R_18817322_18817596 100.00 100.00 100.00 78.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 89.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD lok,RI_chr2L_20063248_20063377 chr2L + chr2L_20062013_20062147 chr2L_20062064_20062147 chr2L_20062148_20062305;chr2L_20061782_20062012 45.33 50.00 37.04 56.25 35.48 43.75 53.25 32.35 50.00 37.50 48.15 56.10 68.00 48.89 57.14 37.35 48.15 45.00 53.70 37.04 46.94 44.23 32.76 51.79 41.03 58.00 53.57 60.61 32.84 25.00 29.69 20.00 34.94 30.95 42.31 22.22 55.26 42.50 51.85 25.17 54.43 45.54 61.70 58.21 48.68 43.59 46.94 40.91 41.59 32.26 45.33 62.79 24.14 17.86 49.30 48.48 54.84 20.51 K alternative_donor sbb,I_chr2R_14193641_14243004,noncoding_7736,RI_chr2R_14243561_14244282,I_chr2R_14243561_14244715 chr2R - chr2R_14243561_14244642;chr2R_14243561_14244715 chr2R_14243561_14244596 chr2R_14243461_14243560;chr2R_14244716_14244766 21.82 NA 37.50 21.43 NA NA 36.36 27.78 13.79 NA NA 23.53 15.38 20.00 NA 27.27 33.33 14.29 20.00 20.00 NA 22.22 7.14 NA NA 16.67 NA NA NA NA 20.00 NA NA 29.41 NA NA NA NA NA NA NA 25.00 12.50 NA NA NA NA NA 23.53 NA NA 28.57 NA NA 40.00 NA 20.00 NA K jcn_only_AA blp,EI_chr3R_11759655_11759701,Sap47 chr3R + chr3R_11759655_11759724 chr3R_11759655_11759721 chr3R_11759632_11759654;chr3R_11759725_11759801 91.18 94.59 95.65 92.19 87.10 91.67 90.24 97.78 89.74 93.55 90.32 91.09 97.22 90.48 94.64 89.08 90.48 90.57 95.24 93.13 89.47 86.89 91.30 91.84 91.18 90.38 98.00 95.00 95.92 91.07 90.00 88.46 89.61 90.72 82.98 85.37 87.76 75.00 92.68 95.12 95.00 95.12 95.45 89.36 94.74 91.18 83.67 94.67 93.46 94.44 92.59 92.16 92.68 88.00 88.57 90.14 92.54 87.33 K jcn_only_AD F_chrX_15764251_15765393,CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15764432_15765393;chrX_15764522_15765393;chrX_15764247_15765393;chrX_15764599_15765393 chrX_15764620_15765393 chrX_15765394_15765493;chrX_15764236_15764246 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention CG10107,CG10103 chr3L - chr3L_6740090_6740201 chr3L_6740089_6740090;chr3L_6740201_6740202 chr3L_6739971_6740089;chr3L_6740202_6740494 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 K intron_retention CG14647 chr3R + chr3R_227208_227322 chr3R_227207_227208;chr3R_227322_227323 chr3R_227076_227207;chr3R_227323_227739 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Rga,Spec2 chr3R - chr3R_1434742_1435371 chr3R_1434742_1435353 chr3R_1434172_1434741;chr3R_1435372_1435603 68.89 60.29 65.31 78.05 78.12 60.47 68.89 80.00 76.54 54.76 54.05 70.13 79.31 64.71 58.33 69.57 73.08 69.05 68.57 67.06 78.79 64.55 68.75 66.67 56.41 78.95 65.62 78.57 71.43 72.97 74.47 76.19 58.59 74.14 73.21 69.84 62.20 67.16 70.93 43.36 70.89 67.42 58.14 63.83 65.75 69.86 62.26 64.18 73.68 75.64 73.44 70.97 69.57 66.22 71.70 64.00 67.44 61.64 K intron_retention CG8176,I_chr3R_5348614_5348964 chr3R + chr3R_5351476_5351530 chr3R_5351475_5351476;chr3R_5351530_5351531 chr3R_5350742_5351475;chr3R_5351531_5351866 0.00 0.00 0.00 0.71 2.70 0.00 0.83 1.33 1.92 0.00 0.00 0.00 1.09 0.00 2.27 0.00 0.00 0.00 3.48 0.99 0.00 2.50 0.75 0.00 0.00 0.00 8.08 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 1.27 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Myb,RI_chrX_15752571_15753225 chrX - chrX_15751579_15751749 chrX_15751578_15751579;chrX_15751749_15751750 chrX_15749823_15751578;chrX_15751750_15751876 96.30 97.06 97.50 97.47 93.94 96.77 97.62 96.23 96.00 84.21 97.44 95.00 97.92 97.87 97.78 96.91 98.21 97.56 98.55 95.65 96.77 97.22 97.87 92.86 95.00 94.74 97.22 90.91 96.97 96.88 96.43 95.00 96.30 98.08 95.45 96.00 91.43 94.12 95.65 90.54 95.24 96.30 97.92 93.48 100.00 96.67 94.44 92.00 94.39 100.00 96.55 93.10 96.00 100.00 96.15 100.00 96.15 95.52 K alternative_donor CG13551,I_chr2R_19265701_19270570 chr2R - chr2R_19270283_19270611 chr2R_19270283_19270570 chr2R_19270138_19270282;chr2R_19270612_19270645 100.00 100.00 99.15 100.00 100.00 99.09 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.64 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.71 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG10365,I_chr3R_19549381_19554106,I_chr3R_19554176_19554388 chr3R + chr3R_19549425_19554388;chr3R_19549381_19554388 chr3R_19549452_19554388 chr3R_19554389_19554488;chr3R_19549281_19549380 3.13 0.00 4.00 3.23 0.00 0.00 3.03 4.35 4.65 0.00 6.25 3.85 13.33 0.00 11.11 9.38 5.26 5.88 0.00 7.50 0.00 NA 0.00 0.00 0.00 3.85 4.55 NA 0.00 0.00 0.00 0.00 3.33 7.41 6.25 NA 0.00 8.70 3.57 4.44 3.33 6.25 0.00 0.00 0.00 2.63 0.00 3.85 6.98 0.00 3.57 0.00 NA 0.00 7.14 0.00 NA 0.00 K jcn_only_AA CG5741,I_chr3L_8928033_8928095 chr3L - chr3L_8928033_8928095 chr3L_8928039_8928095 chr3L_8928096_8928195;chr3L_8927933_8928032 97.22 100.00 97.22 96.77 96.67 100.00 98.46 96.05 100.00 100.00 NA 95.12 93.75 97.14 100.00 100.00 96.43 94.74 97.78 100.00 100.00 94.83 92.11 97.44 100.00 91.89 100.00 95.24 97.22 97.56 91.67 NA 98.28 100.00 100.00 100.00 92.00 NA 100.00 100.00 100.00 94.81 92.31 91.67 97.67 94.74 100.00 92.86 97.10 NA 100.00 NA NA NA 93.88 NA 96.67 93.62 K alternative_acceptor Pfrx,I_chrX_19390217_19400515,RI_chrX_19390217_19403850,RI_chrX_19392914_19400518,RI_chrX_19399882_19400518,I_chrX_19400112_19400515,RI_chrX_19400112_19400518,I_chrX_19400271_19400518 chrX + chrX_19392914_19400518 chrX_19392914_19400515 chrX_19392814_19392913;chrX_19400519_19400615 61.54 NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA 75.00 NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 41.67 NA 60.00 NA NA 90.00 NA 31.25 NA NA NA NA 61.54 NA 70.00 NA NA NA NA NA NA NA K intron_retention p120ctn,I_chr2R_482968_494268,I_chr2R_487593_493262 chr2R + chr2R_487426_487488 chr2R_487425_487426;chr2R_487488_487489 chr2R_486774_487425;chr2R_487489_487592 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG6171,I_chr3R_11188806_11188873,CG34404,CG14868 chr3R - chr3R_11188820_11188873 chr3R_11188819_11188820;chr3R_11188873_11188874 chr3R_11188514_11188819;chr3R_11188874_11188973 54.72 52.17 55.88 80.56 58.82 46.15 68.18 55.81 59.15 61.54 66.67 48.28 50.00 54.17 52.78 48.84 66.67 42.31 55.17 50.57 64.00 58.82 62.86 62.16 77.42 76.47 71.83 58.46 60.47 56.41 57.50 50.00 53.33 46.81 37.50 60.78 55.36 48.08 50.00 54.72 72.09 61.40 42.86 43.14 51.61 45.76 49.12 40.91 56.14 50.00 47.54 57.50 43.18 52.31 47.50 54.55 53.62 57.14 K alternative_acceptor CG32062,I_chr3L_10573430_10580726,F_chr3L_10582617_10583219 chr3L + chr3L_10582617_10583426 chr3L_10582617_10583219 chr3L_10582565_10582616;chr3L_10583427_10583490 0.00 0.00 NA NA NA NA NA NA 6.67 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 5.88 0.00 6.67 0.00 0.00 NA NA NA NA NA NA 0.00 NA 5.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA K intron_retention CG11927,CG11926 chr2L + chr2L_4847848_4847963 chr2L_4847847_4847848;chr2L_4847963_4847964 chr2L_4847785_4847847;chr2L_4847964_4849499 96.15 92.86 93.33 89.74 100.00 100.00 95.65 88.24 97.44 100.00 95.45 95.24 100.00 94.12 100.00 95.24 95.00 100.00 100.00 96.15 92.31 100.00 91.30 95.24 100.00 100.00 100.00 100.00 100.00 95.83 94.44 93.33 96.30 90.62 100.00 92.86 93.10 100.00 100.00 95.83 100.00 97.22 88.89 100.00 94.44 95.65 100.00 100.00 96.55 83.33 95.00 100.00 87.50 100.00 95.65 94.12 96.55 100.00 K intron_retention rho-7,noncoding_6143 chr2R - chr2R_7874732_7874785 chr2R_7874731_7874732;chr2R_7874785_7874786 chr2R_7874532_7874731;chr2R_7874786_7875003 5.56 5.56 0.00 23.33 6.12 5.00 7.14 10.00 7.25 2.70 8.11 8.57 0.00 7.41 0.00 0.00 0.00 3.85 0.00 5.19 6.25 5.66 6.06 3.57 5.26 5.71 9.80 3.39 7.55 8.57 9.38 6.56 6.90 10.42 8.33 5.26 4.67 5.88 9.23 2.68 3.39 10.00 0.00 0.00 7.92 6.80 4.62 3.12 14.04 1.64 7.84 0.00 3.45 3.45 4.17 2.90 6.45 5.36 K jcn_only_AD I_chr3R_261173_261244,CG14650,RI_chr3R_265878_265942 chr3R + chr3R_265874_265942 chr3R_265878_265942 chr3R_265943_266042;chr3R_265778_265873 1.43 2.46 1.09 0.78 2.41 0.00 3.70 1.77 4.65 1.09 0.00 1.83 1.61 1.33 2.17 1.09 0.00 1.22 1.18 0.60 0.00 1.09 2.00 0.00 1.25 0.00 0.78 2.60 5.00 2.27 7.69 2.74 0.00 0.91 1.43 2.99 3.70 1.05 1.23 0.77 0.00 0.74 2.74 1.79 2.26 0.95 0.87 1.55 1.68 5.97 2.56 3.75 3.70 2.08 4.76 3.23 0.75 0.00 K alternative_donor pgant3,I_chr2R_2947729_2947783 chr2R - chr2R_2947729_2947787 chr2R_2947729_2947783 chr2R_2947629_2947728;chr2R_2947788_2947883 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette Eph,I_chr4_631523_634240,I_chr4_632065_634240,I_chr4_632433_632707,I_chr4_632433_632988,I_chr4_639690_640473,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_632065_634240 chr4_632065_632138;chr4_632282_632352;chr4_632433_634240 chr4_632139_632281;chr4_632353_632432 chr4_631965_632064;chr4_634241_634340 100.00 100.00 96.00 95.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.36 100.00 96.77 100.00 98.31 100.00 100.00 97.44 98.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 83.33 85.71 97.92 100.00 94.12 100.00 93.75 94.12 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Ranbp21,I_chrX_19545347_19545435,CG14223 chrX - chrX_19545347_19545435 chrX_19545351_19545435 chrX_19545436_19545535;chrX_19545247_19545346 98.81 100.00 97.73 100.00 100.00 100.00 100.00 97.83 94.78 98.84 100.00 97.67 NA 97.44 100.00 94.59 100.00 97.73 100.00 97.78 100.00 98.97 98.67 97.53 98.59 97.30 98.82 98.09 98.31 100.00 100.00 97.85 99.26 98.61 100.00 100.00 97.40 100.00 99.09 98.10 99.12 98.99 100.00 98.28 98.89 98.17 98.18 98.81 97.18 100.00 98.75 97.22 100.00 95.12 100.00 98.31 100.00 95.86 K alternative_donor Wwox,I_chr2L_8000434_8000497,Spn28D chr2L - chr2L_8000434_8003283 chr2L_8000434_8000497 chr2L_8000366_8000433;chr2L_8003284_8003463 15.38 13.04 18.18 26.32 12.50 17.65 27.27 26.47 24.32 20.00 36.36 21.05 40.00 26.32 20.00 23.08 33.33 27.27 26.32 17.65 21.43 7.14 11.76 13.04 8.70 13.04 20.00 16.67 9.52 6.25 16.67 9.09 4.35 31.03 14.29 13.04 25.00 10.53 8.11 13.79 7.69 24.24 30.77 19.05 7.41 12.50 10.71 8.70 23.08 11.76 11.54 15.38 3.12 7.41 26.32 11.11 6.67 3.23 K alternative_donor sec63,RI_chr3L_7354705_7354843 chr3L + chr3L_7354132_7354843 chr3L_7354705_7354843 chr3L_7354844_7354943;chr3L_7353532_7354131 1.08 1.03 0.00 1.09 1.47 1.23 0.87 0.68 1.18 1.11 0.00 0.62 1.20 0.00 1.11 1.43 1.04 1.23 0.91 1.08 1.39 2.59 0.74 0.88 1.59 0.00 0.81 3.45 1.38 1.19 2.80 1.05 1.26 0.69 0.00 0.00 2.94 1.37 2.02 1.15 0.68 1.04 1.54 1.09 1.46 0.44 0.00 0.38 1.18 0.86 1.08 1.14 0.00 0.00 0.98 1.32 0.75 0.28 K intron_retention tai,I_chr2L_9191814_9206231 chr2L + chr2L_9191814_9233987 chr2L_9191813_9191814;chr2L_9233987_9233988 chr2L_9191714_9191813;chr2L_9233988_9234657 0.00 0.00 0.00 1.54 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 2.97 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 1.68 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette kis,RI_chr2L_218886_227371,RI_chr2L_231035_231947,RI_chr2L_242745_242800,I_chr2L_242926_250756 chr2L - chr2L_218886_227371 chr2L_218886_226115;chr2L_226509_227371 chr2L_226116_226508 chr2L_218786_218885;chr2L_227372_227471 98.92 98.31 98.21 95.29 97.83 96.15 100.00 98.82 100.00 98.65 100.00 99.30 100.00 100.00 100.00 98.33 100.00 97.96 97.67 99.34 100.00 89.78 99.37 98.96 98.73 100.00 96.77 98.90 96.20 98.57 98.04 97.30 99.27 98.97 98.84 100.00 99.40 98.53 99.28 100.00 100.00 97.30 97.56 98.78 100.00 97.92 98.08 99.22 98.36 100.00 98.92 100.00 100.00 100.00 96.43 97.50 100.00 100.00 K intron_retention c12_2 chrX + chrX_9213718_9214117 chrX_9213717_9213718;chrX_9214117_9214118 chrX_9213525_9213717;chrX_9214118_9214545 15.74 14.29 NA NA 25.00 NA 16.67 NA 13.64 NA NA 13.04 NA NA 13.33 NA NA NA NA 7.41 NA 88.89 12.50 25.00 22.22 NA 20.83 20.00 22.73 10.00 18.75 NA 5.26 18.75 NA 0.00 19.51 NA 11.76 19.05 NA 17.86 NA 10.53 NA NA NA 6.67 14.81 25.00 24.00 25.00 NA 6.67 NA 12.50 6.67 NA K intron_retention FKBP59,CG4537 chr2L + chr2L_9889571_9889631 chr2L_9889570_9889571;chr2L_9889631_9889632 chr2L_9889460_9889570;chr2L_9889632_9889769 0.00 0.00 0.00 0.35 0.00 0.00 0.38 0.64 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.48 0.89 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5991 chr3R + chr3R_19877478_19877559 chr3R_19877477_19877478;chr3R_19877559_19877560 chr3R_19877426_19877477;chr3R_19877560_19879314 97.92 97.06 95.45 100.00 100.00 97.22 98.48 98.72 98.78 100.00 95.83 98.70 97.78 100.00 98.33 97.37 97.06 96.97 98.21 97.80 100.00 94.74 93.48 97.44 95.45 97.62 100.00 100.00 100.00 100.00 98.36 100.00 97.92 98.82 96.77 100.00 100.00 96.30 100.00 98.25 100.00 97.75 97.06 97.22 95.83 93.88 97.22 96.77 98.94 100.00 97.62 96.67 100.00 96.30 96.55 100.00 100.00 97.83 K jcn_only_AD sax,CG1882 chr2R + chr2R_3700498_3700785;chr2R_3700238_3700785 chr2R_3700197_3700785 chr2R_3700786_3702250;chr2R_3700011_3700196 14.29 13.24 11.11 14.08 6.45 26.53 11.38 12.31 17.17 12.07 5.71 11.22 17.07 13.04 18.84 21.31 11.11 24.39 21.74 18.25 11.54 23.27 11.63 15.91 17.24 12.50 18.98 8.40 13.01 10.53 26.83 14.58 11.00 5.63 15.79 11.58 12.84 16.30 18.58 12.77 17.48 19.05 11.76 12.04 22.06 21.00 8.25 18.33 20.21 15.66 16.50 17.46 10.81 14.29 12.73 12.68 18.31 16.00 K intron_retention norpA,I_chrX_4217835_4219380,I_chrX_4219265_4219380 chrX + chrX_4219265_4219380 chrX_4219264_4219265;chrX_4219380_4219381 chrX_4219252_4219264;chrX_4219381_4219480 60.00 NA NA NA NA NA NA 63.64 44.44 NA NA NA NA NA NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA 69.23 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG1021,I_chr3R_2217711_2231099,I_chr3R_2217711_2231390,RI_chr3R_2217711_2231463,I_chr3R_2217742_2218601,I_chr3R_2217742_2219453,I_chr3R_2218465_2231390,RI_chr3R_2218465_2231463,I_chr3R_2218682_2231463,I_chr3R_2219634_2231390,I_chr3R_2231383_2231463 chr3R - chr3R_2217742_2218601;chr3R_2217711_2218601 chr3R_2218465_2218601 chr3R_2218602_2218681;chr3R_2217642_2217710 26.09 22.22 23.53 45.45 27.27 23.08 47.06 34.62 38.46 25.00 11.11 34.21 44.44 40.00 20.69 37.50 40.00 21.05 35.00 20.83 13.64 38.46 18.42 17.07 20.00 28.57 34.78 28.57 36.84 29.41 33.33 12.50 14.81 32.56 30.00 18.18 21.21 11.54 11.90 27.08 23.08 33.33 29.41 28.12 27.78 30.77 17.86 28.57 35.29 23.40 16.13 15.79 8.11 13.33 26.09 23.53 13.46 24.00 K cassette bol,RI_chr3L_9117011_9118271 chr3L - chr3L_9106588_9118266;chr3L_9106588_9118271 chr3L_9106588_9116715;chr3L_9116877_9118271,chr3L_9116877_9118266 chr3L_9116716_9116876 chr3L_9106512_9106587;chr3L_9118272_9118272 95.45 NA 80.00 NA NA NA 100.00 85.71 90.91 NA NA 100.00 NA 100.00 NA 100.00 NA NA 85.71 66.67 NA NA NA NA NA NA NA NA NA NA 75.00 NA NA 100.00 NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K jcn_only_AA CG2064 chr2R + chr2R_3553522_3553627;chr2R_3553522_3553650 chr2R_3553522_3553619 chr2R_3553444_3553521;chr2R_3553651_3553914 0.42 0.46 0.42 0.48 0.00 0.47 0.55 0.27 0.32 0.00 0.00 0.44 0.64 0.55 0.00 0.29 0.80 0.00 0.00 0.20 0.65 0.00 0.45 1.13 0.43 0.37 0.57 0.69 0.58 0.00 0.90 0.00 1.46 0.28 0.43 0.35 0.00 0.42 0.00 0.65 1.69 0.49 0.00 1.11 1.35 0.29 0.00 0.57 0.00 0.32 0.00 1.12 0.00 0.84 0.00 0.00 0.23 0.81 K intron_retention LanB1 chr2L + chr2L_7814401_7814575 chr2L_7814400_7814401;chr2L_7814575_7814576 chr2L_7814363_7814400;chr2L_7814576_7814643 0.00 0.00 0.00 5.63 2.60 0.00 3.42 0.52 1.00 0.00 2.08 0.75 1.40 3.54 2.82 1.52 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 6.82 5.88 11.11 11.11 2.86 0.00 NA 0.00 3.27 0.00 0.00 0.00 0.00 NA 4.08 10.53 1.06 0.00 0.00 NA 0.00 0.00 0.00 2.12 0.00 5.56 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention eIF4G,I_chr4_948813_950447 chr4 - chr4_950743_951137 chr4_950742_950743;chr4_951137_951138 chr4_950706_950742;chr4_951138_951213 0.00 NA NA NA NA NA 4.44 0.00 0.00 NA NA 6.25 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Psa,I_chr3L_1518053_1518213 chr3L + chr3L_1517756_1518176 chr3L_1517755_1517756;chr3L_1518176_1518177 chr3L_1517586_1517755;chr3L_1518177_1518796 12.14 NA NA 15.38 NA NA 14.29 10.00 9.09 NA NA 29.41 NA NA NA 4.35 NA NA 14.29 5.88 NA NA NA NA NA NA NA NA NA NA 16.67 NA 0.00 22.22 NA NA NA NA NA NA NA 16.67 NA NA NA NA NA 5.00 8.70 NA NA NA NA NA NA NA NA NA K intron_retention CG1172 chr3R + chr3R_1219825_1219952 chr3R_1219824_1219825;chr3R_1219952_1219953 chr3R_1219638_1219824;chr3R_1219953_1220115 0.00 0.00 0.00 1.96 0.00 0.00 6.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.17 0.00 0.00 3.92 3.39 11.11 2.13 0.00 0.00 0.00 0.00 1.72 14.49 0.00 0.00 0.00 1.77 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention TBPH,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19747141_19747212 chr2R_19747140_19747141;chr2R_19747212_19747213 chr2R_19746699_19747140;chr2R_19747213_19747350 0.00 0.00 0.00 0.00 0.00 0.00 20.93 3.92 3.77 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 6.67 0.00 0.00 8.33 5.56 9.68 0.00 23.08 0.00 0.00 5.26 0.00 0.00 0.00 12.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 2.56 5.26 0.00 3.12 2.56 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette ctp,I_chrX_4582382_4585669,I_chrX_4582627_4585669,RI_chrX_4582706_4585629,RI_chrX_4582706_4592329 chrX + chrX_4582706_4592329 chrX_4582706_4585669;chrX_4585878_4592329 chrX_4585670_4585877 chrX_4582606_4582705;chrX_4592330_4592419 100.00 100.00 100.00 99.56 100.00 100.00 99.75 99.79 99.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.86 100.00 100.00 100.00 100.00 100.00 99.57 100.00 99.35 100.00 99.60 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.80 100.00 100.00 100.00 99.67 100.00 99.76 100.00 100.00 99.81 100.00 100.00 99.51 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817 chr2R + chr2R_15330246_15330305;chr2R_15330246_15330292 chr2R_15330246_15330317 chr2R_15330177_15330245;chr2R_15330318_15330383 0.00 0.00 0.01 0.00 0.02 0.00 0.00 0.01 0.00 0.05 0.00 0.00 0.00 0.00 0.01 0.00 0.02 0.00 0.02 0.01 0.03 0.00 0.02 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.01 0.01 0.00 0.00 0.01 0.00 K alternative_acceptor ATPsyn-beta chr4 + chr4_1052580_1053532 chr4_1052580_1053514 chr4_1052474_1052579;chr4_1053533_1053844 0.22 0.15 0.23 0.27 0.28 0.16 0.17 0.22 0.15 0.00 0.27 0.16 0.14 0.16 0.22 0.44 0.41 0.21 0.49 0.26 0.26 0.87 0.29 0.30 0.00 0.26 0.22 0.31 0.00 0.28 0.14 0.00 0.18 0.09 0.63 0.00 0.13 0.00 0.25 0.16 0.87 0.20 0.17 0.31 0.22 0.00 0.40 0.28 0.21 0.50 0.30 0.20 0.51 0.31 0.11 0.19 0.16 0.00 K cassette Dap160,I_chr2L_21139943_21140007 chr2L - chr2L_21138031_21138711 chr2L_21138031_21138112;chr2L_21138359_21138711 chr2L_21138113_21138358 chr2L_21137757_21138030;chr2L_21138712_21139602 84.81 92.00 84.62 55.36 85.19 90.32 80.00 76.00 84.81 84.78 83.33 93.65 87.10 81.82 80.95 97.06 84.85 74.36 88.24 82.22 80.00 85.88 82.05 92.21 84.09 80.00 84.75 97.73 80.70 83.33 74.42 82.35 85.90 91.67 93.48 63.16 87.63 92.00 87.36 94.51 85.42 88.31 96.15 88.71 87.50 85.71 86.54 86.15 83.10 78.95 81.93 84.62 83.33 86.54 80.43 79.66 87.88 74.12 K alternative_donor Mnf,RI_chr3L_11108913_11109028 chr3L - chr3L_11111166_11113709;chr3L_11111166_11113381 chr3L_11111166_11112264 chr3L_11110405_11111165;chr3L_11113710_11113829 3.85 0.00 3.23 4.17 6.25 5.26 2.38 3.70 6.98 0.00 4.55 3.51 3.33 3.85 2.94 3.45 4.76 5.56 3.12 4.76 4.76 3.45 4.00 4.00 4.00 4.55 4.35 11.11 11.11 7.69 3.57 0.00 7.69 1.96 0.00 3.23 6.67 0.00 3.70 3.23 7.14 4.44 2.94 0.00 5.88 5.26 0.00 4.35 3.33 3.85 3.23 10.00 0.00 6.25 3.33 4.35 0.00 3.85 K intron_retention sdt,E_chrX_8118081_8119115,C_chrX_8118081_8119117,I_chrX_8131684_8131842 chrX + chrX_8118081_8121903 chrX_8118080_8118081;chrX_8121903_8121904 chrX_8117989_8118080;chrX_8121904_8122131 0.00 0.00 7.69 NA 5.88 5.00 NA 6.67 5.41 0.00 0.00 2.70 NA NA 0.00 NA 0.00 0.00 NA 3.57 NA 0.00 0.00 2.56 8.00 18.75 7.14 NA 7.41 0.00 NA 0.00 0.00 11.76 0.00 6.45 0.00 0.00 8.51 1.69 NA 5.26 NA 0.00 0.00 0.00 0.00 6.52 6.45 0.00 0.00 9.09 NA 0.00 0.00 0.00 NA NA K intron_retention Kr-h2 chr2L + chr2L_6073174_6073236 chr2L_6073173_6073174;chr2L_6073236_6073237 chr2L_6073040_6073173;chr2L_6073237_6073712 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 1.02 1.15 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Cnx99A,I_chr3R_25144335_25145173,I_chr3R_25145243_25145309,I_chr3R_25145256_25145426 chr3R - chr3R_25145216_25145286 chr3R_25145215_25145216;chr3R_25145286_25145287 chr3R_25145174_25145215;chr3R_25145287_25145319 98.01 99.20 94.35 99.06 97.92 96.58 100.00 97.97 98.01 96.20 99.10 99.60 97.56 96.97 99.33 97.35 99.21 98.26 97.33 97.43 96.43 94.59 99.41 100.00 99.00 97.62 100.00 95.35 97.85 96.46 95.93 92.50 97.56 95.14 99.13 99.12 99.34 98.84 99.19 98.75 98.59 96.59 96.30 97.39 92.39 97.96 99.37 93.40 98.29 100.00 99.45 98.41 97.25 100.00 99.35 99.18 100.00 94.06 K alternative_acceptor HmgD,I_chr2R_17601672_17603325,I_chr2R_17603119_17603196 chr2R + chr2R_17603123_17603250 chr2R_17603123_17603196 chr2R_17602911_17603122;chr2R_17603251_17603296 100.00 100.00 100.00 99.69 100.00 100.00 100.00 100.00 100.00 99.64 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.77 100.00 99.82 99.87 99.76 99.72 100.00 100.00 100.00 100.00 99.88 100.00 99.83 100.00 100.00 99.86 99.84 100.00 100.00 99.81 100.00 100.00 100.00 100.00 100.00 100.00 99.79 100.00 100.00 K alternative_acceptor CG3532 chr3R + chr3R_7840163_7840234 chr3R_7840163_7840225 chr3R_7840045_7840162;chr3R_7840235_7840251 100.00 93.75 100.00 100.00 87.50 100.00 94.74 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 NA 100.00 92.86 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 90.91 100.00 100.00 100.00 95.24 90.00 92.31 100.00 100.00 100.00 100.00 92.86 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 K alternative_donor Rap2l,I_chr2R_19951753_19952256,RI_chr2R_19952181_19952256 chr2R + chr2R_19952181_19952256;chr2R_19951753_19952256 chr2R_19951097_19952256 chr2R_19952257_19952356;chr2R_19950576_19951096 92.16 94.23 94.23 94.74 92.86 96.00 90.54 93.75 92.86 89.29 90.91 93.75 91.30 94.12 94.23 89.47 93.48 90.48 92.59 90.54 91.89 91.03 91.89 91.18 91.18 92.73 90.70 76.32 89.19 88.64 90.91 92.86 88.10 93.02 90.24 90.91 85.00 93.88 93.55 91.14 92.73 93.40 94.74 92.54 92.16 95.12 90.74 91.80 91.67 90.14 88.46 90.48 93.18 93.02 93.75 92.65 93.94 92.54 K jcn_only_AA Dp,I_chr2R_9111166_9112971,REI_chr2R_9113257_9113316 chr2R + chr2R_9113257_9113316 chr2R_9113257_9113313 chr2R_9113201_9113256;chr2R_9113317_9113416 94.00 95.18 97.85 94.12 92.00 90.91 89.19 93.84 92.66 92.06 94.23 94.12 89.04 90.28 95.24 96.84 95.24 98.15 85.45 96.10 90.62 92.71 94.87 94.74 97.40 98.28 93.81 95.00 89.83 95.24 100.00 98.41 96.77 92.42 98.44 96.55 90.83 92.96 93.22 96.04 97.56 95.11 94.00 95.41 92.08 93.55 93.98 91.30 92.90 94.74 90.57 91.67 93.06 95.89 92.73 91.14 84.72 97.54 K jcn_only_AA Eip71CD chr3L + chr3L_15505837_15505905 chr3L_15505837_15505895 chr3L_15505771_15505836;chr3L_15505906_15505963 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_donor Tor chr2L + chr2L_13005998_13006352 chr2L_13006226_13006352 chr2L_13006353_13006363;chr2L_13005431_13005997 31.66 NA 16.67 53.85 NA 33.33 21.43 27.78 25.00 NA 50.00 23.53 NA 33.33 18.75 23.53 NA 18.18 NA 50.00 NA 50.00 NA NA 33.33 20.00 60.00 66.67 50.00 NA 21.43 NA 22.22 29.41 30.00 30.00 57.14 NA 25.00 35.71 NA 23.08 NA NA 37.50 NA NA 41.67 43.75 NA 30.00 20.00 50.00 NA 27.27 50.00 50.00 44.44 K intron_retention mthl10 chr3L - chr3L_334120_334237 chr3L_334119_334120;chr3L_334237_334238 chr3L_334067_334119;chr3L_334238_334276 100.00 94.12 92.86 100.00 100.00 100.00 100.00 96.00 96.67 NA 100.00 100.00 95.24 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 88.89 100.00 NA 88.89 100.00 NA 100.00 93.33 NA 93.33 100.00 100.00 96.77 100.00 92.86 100.00 100.00 88.89 91.67 96.77 83.33 90.91 100.00 NA 88.89 93.75 100.00 92.86 NA K alternative_acceptor wb chr2L + chr2L_14325555_14326434 chr2L_14325555_14325695 chr2L_14324897_14325554;chr2L_14326435_14327053 40.84 50.00 NA 52.94 NA 16.67 66.67 50.00 37.50 NA NA 41.67 75.00 33.33 33.33 50.00 25.00 75.00 75.00 30.77 NA 33.33 14.29 23.08 NA NA 25.00 100.00 NA 40.00 20.00 66.67 50.00 50.00 33.33 33.33 20.00 20.00 12.50 46.15 NA 50.00 50.00 42.86 66.67 42.86 50.00 75.00 45.45 35.71 16.67 75.00 33.33 27.27 33.33 40.00 30.00 50.00 K cassette unc-13,CRE_chr4_904268_906381,I_chr4_904268_919018,I_chr4_904747_906385,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_904268_906385 chr4_904268_906079;chr4_906089_906385 chr4_906080_906088 chr4_904196_904267;chr4_906386_906481 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Hsc70Cb chr3L + chr3L_14030513_14030577;chr3L_14030522_14030577 chr3L_14030503_14030577 chr3L_14030578_14030850;chr3L_14030355_14030502 12.50 NA NA 0.00 NA NA 11.54 22.22 18.75 NA NA 12.50 NA NA NA NA NA NA 12.50 8.33 NA NA NA NA NA NA NA NA 20.00 NA 11.11 NA NA 10.00 NA NA NA NA NA 16.67 NA 37.50 NA NA NA NA NA NA 0.00 NA NA NA NA NA 28.57 NA NA NA K intron_retention CG1399,I_chr2R_3574133_3574191 chr2R - chr2R_3575799_3585614 chr2R_3575798_3575799;chr2R_3585614_3585615 chr2R_3575701_3575798;chr2R_3585615_3586370 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 4.55 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.64 0.00 0.00 NA 0.00 0.00 11.11 3.92 5.56 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention CG2118,I_chr3R_27619193_27619598 chr3R - chr3R_27618078_27618149 chr3R_27618077_27618078;chr3R_27618149_27618150 chr3R_27617866_27618077;chr3R_27618150_27618368 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 95.00 100.00 100.00 K multi_cassette CG40263,F_chr2RHet_1265687_1293040,F_chr2RHet_1298459_1298703,F_chr2RHet_1298459_1311408,F_chr2RHet_1298885_1299622,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1265687_1324445 chr2RHet_1265687_1286307;chr2RHet_1286572_1292103;chr2RHet_1292187_1293055;chr2RHet_1293175_1293235;chr2RHet_1293394_1324445 chr2RHet_1286308_1286571;chr2RHet_1292104_1292186;chr2RHet_1293056_1293174;chr2RHet_1293236_1293393 chr2RHet_1265587_1265686;chr2RHet_1324446_1324530 51.31 52.63 52.63 46.15 60.00 47.62 40.00 49.25 54.55 50.00 NA 48.72 55.56 61.11 61.11 48.57 71.43 60.00 50.00 87.50 40.00 33.33 53.33 47.37 25.00 42.86 71.43 20.00 22.22 75.00 72.00 50.00 37.50 56.41 40.00 22.22 66.67 55.56 53.85 65.00 8.70 59.46 61.11 56.25 20.00 40.00 52.94 80.00 54.29 18.18 68.42 55.56 30.00 50.00 75.00 43.75 33.33 13.79 K alternative_acceptor CG18624,RI_chrX_7787450_7787620,RI_chrX_7787450_7787687,RI_chrX_7787524_7787687 chrX - chrX_7787450_7787782 chrX_7787524_7787782 chrX_7787783_7787787;chrX_7787424_7787449 99.13 99.21 97.58 99.09 99.18 99.32 97.14 95.26 96.74 100.00 98.10 97.08 95.65 97.35 99.37 97.63 99.08 98.41 98.40 96.17 99.20 100.00 99.15 100.00 100.00 99.13 99.20 98.63 99.11 100.00 98.92 99.43 100.00 97.89 100.00 100.00 99.50 99.07 100.00 99.53 100.00 98.90 98.17 100.00 97.84 100.00 99.19 100.00 98.46 98.97 98.82 100.00 99.15 99.08 97.60 100.00 99.58 98.80 K intron_retention yellow-f2,CG17327,E_chr3R_8823050_8823182 chr3R - chr3R_8823047_8823161 chr3R_8823046_8823047;chr3R_8823161_8823162 chr3R_8822950_8823046;chr3R_8823162_8823177 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG2818 chr2L + chr2L_3713737_3714091 chr2L_3713736_3713737;chr2L_3714091_3714092 chr2L_3713380_3713736;chr2L_3714092_3714491 0.00 NA NA 5.56 NA NA 4.00 0.00 0.00 NA NA 0.00 NA 7.14 0.00 0.00 0.00 NA 0.00 3.85 NA 0.00 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA 3.23 NA NA NA NA 0.00 0.00 NA 3.45 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 NA K alternative_donor vib,RI_chr3R_15051793_15051920,RI_chr3R_15051793_15052186 chr3R - chr3R_15051793_15052186;chr3R_15051793_15052202 chr3R_15051793_15051920 chr3R_15051737_15051792;chr3R_15052203_15052286 5.32 7.27 4.69 4.84 9.26 4.76 10.75 7.25 6.40 14.71 2.67 4.83 7.25 7.23 5.34 4.49 7.02 3.95 3.88 4.96 4.44 11.43 6.38 4.93 9.52 6.09 5.19 8.93 11.27 4.90 2.75 5.00 10.17 7.33 7.22 6.33 4.21 5.81 4.85 4.19 6.78 5.32 5.88 6.12 3.37 6.34 4.35 8.70 4.25 3.39 4.76 5.13 3.36 3.77 6.30 3.48 3.17 5.68 K cassette Mical,I_chr3R_5828974_5830131,noncoding_15780,I_chr3R_5829878_5830377,I_chr3R_5834577_5835458,I_chr3R_5843939_5844218,I_chr3R_5847106_5863537,I_chr3R_5863483_5863537,I_chr3R_5863613_5868513 chr3R - chr3R_5829373_5830377 chr3R_5829373_5830131;chr3R_5830165_5830377 chr3R_5830132_5830164 chr3R_5829096_5829372;chr3R_5830378_5830477 0.00 0.00 NA NA 5.88 NA 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 3.45 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 NA 0.00 0.00 2.56 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 K alternative_donor lqfR,I_chr3R_18243588_18243830 chr3R + chr3R_18239002_18239082 chr3R_18239006_18239082 chr3R_18239083_18239179;chr3R_18238632_18239001 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.88 0.00 2.00 0.00 1.49 1.54 1.15 0.00 2.56 0.00 0.80 0.00 0.00 0.00 0.00 1.61 0.00 0.72 1.33 0.00 0.00 0.00 1.33 0.00 1.59 0.83 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Thiolase chr2R - chr2R_19755518_19755575 chr2R_19755517_19755518;chr2R_19755575_19755576 chr2R_19755343_19755517;chr2R_19755576_19755735 2.46 2.30 0.92 7.26 1.83 0.00 6.29 2.16 1.06 3.39 4.94 1.27 0.00 0.99 3.25 0.75 0.00 3.51 3.81 2.83 1.05 6.02 3.72 0.82 11.88 7.23 2.93 2.15 6.72 4.21 13.83 1.83 4.83 2.66 4.63 14.00 2.55 0.94 2.50 2.71 13.25 1.74 2.44 2.42 1.94 2.59 2.32 6.96 1.93 1.84 2.13 1.53 2.53 1.68 2.46 0.00 2.38 3.25 N intron_retention CG32529 chrX + chrX_19795687_19795900 chrX_19795686_19795687;chrX_19795900_19795901 chrX_19795901_19798251 15.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K mutually_exclusive Cda5 chr2L - chr2L_29069_33844,chr2L_34284_34557 chr2L_29069_30393,chr2L_33271_34557 chr2L_33845_34283 chr2L_30394_33270 chr2L_29024_29068;chr2L_34558_34596 0.00 NA 0.00 NA NA NA NA 0.00 0.00 NA NA 100.00 NA NA NA 0.00 NA 0.00 NA 0.00 NA 0.00 NA 0.00 NA 25.00 NA NA 0.00 NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 K intron_retention CG1407,RI_chr2R_5918919_5919093,I_chr2R_5918925_5919213,RI_chr2R_5918952_5919084,RI_chr2R_5918952_5919093 chr2R - chr2R_5918952_5919093 chr2R_5918951_5918952;chr2R_5919093_5919094 chr2R_5918927_5918951;chr2R_5919094_5919184 7.27 7.84 8.70 5.56 0.00 0.00 11.84 5.83 8.09 5.13 4.92 9.92 8.20 11.36 10.34 3.80 7.55 3.33 7.89 3.28 5.26 1.47 7.27 6.90 7.41 2.99 16.90 16.67 9.52 6.45 8.70 12.50 8.70 3.88 14.71 2.86 10.13 10.53 6.15 6.82 21.05 6.87 4.35 9.09 6.90 0.00 11.54 0.00 6.45 10.34 9.80 10.91 8.00 12.12 1.25 2.38 4.23 4.76 K alternative_donor Mpcp chr3L + chr3L_14530803_14531103;chr3L_14530935_14531103 chr3L_14530949_14531103 chr3L_14531104_14531521;chr3L_14530797_14530802 0.00 0.29 0.00 0.33 0.00 0.00 0.74 0.00 0.20 0.00 0.00 0.00 0.29 0.00 0.16 0.00 0.21 0.20 0.43 0.21 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.33 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.74 0.00 0.00 0.00 0.62 N cassette Aats-his,EI_chrX_18409716_18414750 chrX + chrX_18409716_18412857 chrX_18409716_18411843;chrX_18412060_18412857 chrX_18411844_18412059 chrX_18409616_18409715;chrX_18412858_18413286 100.00 100.00 100.00 91.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.19 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD akirin,I_chr3L_7363173_7364806,I_chr3L_7363177_7364806,I_chr3L_7363177_7364831,I_chr3L_7363211_7364831,I_chr3L_7363731_7364806,I_chr3L_7364126_7364806,RI_chr3L_7364737_7364806 chr3L + chr3L_7363169_7364806 chr3L_7363285_7364806 chr3L_7364807_7364906;chr3L_7363111_7363168 73.03 70.09 78.41 69.07 70.25 80.56 72.16 66.17 72.00 73.03 72.73 64.41 68.50 73.11 73.55 65.48 69.91 75.57 80.73 59.30 82.21 82.47 69.49 72.89 76.16 72.27 68.11 62.07 78.14 70.49 75.11 79.73 78.20 74.04 72.02 78.38 72.13 73.89 75.58 73.19 86.49 72.57 75.25 73.73 80.31 81.01 71.05 88.89 69.78 68.60 70.00 66.11 78.76 62.26 78.31 72.63 74.47 87.77 K alternative_acceptor I_chr3L_20775431_20775486,CG11396 chr3L - chr3L_20780810_20780890 chr3L_20780814_20780890 chr3L_20780891_20781177;chr3L_20780229_20780809 83.73 NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA 75.00 NA NA 72.73 NA NA NA 90.00 NA 77.78 90.00 NA NA 78.57 NA NA 66.67 66.67 100.00 NA NA 72.73 NA NA NA NA NA NA 91.67 NA NA 90.00 NA NA NA NA NA NA 91.67 K jcn_only_AD CG14939,RI_chr2L_11812683_11813150 chr2L - chr2L_11812683_11813724;chr2L_11812683_11813150 chr2L_11812683_11813633 chr2L_11812583_11812682;chr2L_11813725_11813792 2.88 11.43 3.17 1.00 2.56 4.76 2.86 5.88 1.85 NA 0.00 2.91 2.33 0.00 1.67 0.00 0.00 0.00 4.84 3.17 0.00 14.29 NA NA NA 1.96 NA NA 16.67 NA 1.59 6.45 0.00 4.46 NA NA 7.14 9.09 12.00 4.55 NA 0.94 0.00 15.00 0.00 NA NA 9.68 0.98 NA NA 3.70 NA NA 3.39 NA 0.00 3.70 K intron_retention CG11790,CG11791 chr3R + chr3R_20876091_20876902 chr3R_20876090_20876091;chr3R_20876902_20876903 chr3R_20876022_20876090;chr3R_20876903_20877278 88.24 79.07 82.61 92.75 89.47 78.05 92.54 88.46 89.42 81.82 90.48 91.25 79.59 86.00 91.67 97.01 86.05 88.24 87.27 94.66 89.74 84.62 87.72 86.54 96.55 97.44 95.45 89.29 97.30 90.48 90.16 90.91 86.05 87.64 96.55 87.88 86.79 89.19 84.91 86.52 82.50 86.21 87.10 89.06 92.86 84.44 73.33 94.29 90.62 93.88 85.71 88.89 76.92 78.57 89.06 84.09 78.26 78.57 K intron_retention CG3192 chrX - chrX_6571609_6571684 chrX_6571608_6571609;chrX_6571684_6571685 chrX_6571283_6571608;chrX_6571685_6571914 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 K alternative_acceptor tra2,psnoRNA:tra2-a,REFI_chr2R_10491644_10491701 chr2R - chr2R_10490382_10490665 chr2R_10490411_10490665 chr2R_10490666_10490794;chr2R_10490009_10490381 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention AIF chr2L + chr2L_2152271_2152662 chr2L_2152270_2152271;chr2L_2152662_2152663 chr2L_2152233_2152270;chr2L_2152663_2152944 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 7.32 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 9.09 5.56 0.00 0.00 0.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.12 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pros35,I_chr2L_10222136_10222201,I_chr2L_10222136_10222259,CG4908 chr2L + chr2L_10222144_10222201 chr2L_10222143_10222144;chr2L_10222201_10222202 chr2L_10222075_10222143;chr2L_10222202_10222270 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.34 0.00 0.00 0.00 0.00 0.28 1.35 0.00 0.00 0.37 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.37 0.00 0.00 0.32 0.17 0.79 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 K intron_retention bcn92,E_chrX_2042753_2043276,wapl,Cyp4d1 chrX - chrX_2042877_2043253 chrX_2042876_2042877;chrX_2043253_2043254 chrX_2042480_2042876;chrX_2043254_2043374 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.71 0.00 4.17 0.00 0.00 0.00 0.00 1.68 0.00 4.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD CG12703 chrX + chrX_19645171_19650462 chrX_19645580_19650462 chrX_19650463_19650575;chrX_19644833_19645170 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Cf2,I_chr2L_4882802_4882864 chr2L - chr2L_4882802_4882864;chr2L_4882366_4882864 chr2L_4882493_4882864 chr2L_4882865_4882964;chr2L_4881215_4882365 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA 72.41 NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG12703 chrX + chrX_19645198_19645380;chrX_19645200_19645380;chrX_19645202_19645380;chrX_19645171_19645380;chrX_19644924_19645380 chrX_19645123_19645380 chrX_19645381_19645579;chrX_19644833_19644923 0.76 0.00 1.46 3.49 2.06 0.00 2.48 0.00 0.76 1.43 1.67 1.29 0.00 3.06 0.00 0.60 1.89 1.90 0.00 0.82 0.00 0.89 2.27 0.98 1.52 3.61 2.59 0.00 1.39 0.66 1.67 0.00 0.00 0.00 0.85 0.87 0.00 2.15 0.00 0.76 1.54 0.00 1.96 0.00 0.74 0.00 0.00 0.47 0.45 1.20 0.00 0.00 0.00 1.52 0.00 0.00 0.98 0.00 K alternative_donor CG31782,VhaSFD,RI_chr2L_16731891_16731942 chr2L - chr2L_16724002_16724068 chr2L_16724002_16724057 chr2L_16723138_16724001;chr2L_16724069_16724171 100.00 100.00 93.75 94.44 100.00 100.00 84.21 100.00 100.00 NA 100.00 90.00 88.89 100.00 100.00 100.00 NA 100.00 100.00 91.18 NA 92.31 100.00 NA NA 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 NA 88.89 93.33 100.00 88.46 87.50 87.50 94.12 100.00 100.00 91.67 94.12 87.50 NA NA NA NA 91.67 100.00 100.00 93.75 K alternative_donor CG11486,I_chr3L_3082041_3082115,RE_chr3L_3084894_3085203 chr3L + chr3L_3078045_3083732 chr3L_3078188_3083732 chr3L_3083733_3083809;chr3L_3077929_3078044 83.33 NA NA NA NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K multi_cassette CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2439831_2459590 chr3L_2439831_2442435;chr3L_2442961_2443389;chr3L_2443839_2443987;chr3L_2444088_2444498;chr3L_2446102_2459590 chr3L_2442436_2442960;chr3L_2443390_2443838;chr3L_2443988_2444087;chr3L_2444499_2446101 chr3L_2439731_2439830;chr3L_2459591_2459690 100.00 95.83 94.44 97.06 100.00 100.00 100.00 100.00 97.62 96.30 100.00 97.14 100.00 100.00 100.00 100.00 100.00 93.75 93.75 97.37 100.00 96.43 100.00 97.56 100.00 100.00 97.56 100.00 98.08 97.56 100.00 95.45 98.25 100.00 96.43 100.00 98.44 96.97 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 96.88 97.30 100.00 94.74 100.00 94.44 94.74 95.45 100.00 100.00 K alternative_acceptor CG11337,I_chr3R_27230306_27230374,RI_chr3R_27230320_27230374 chr3R - chr3R_27230320_27230374;chr3R_27230327_27230374 chr3R_27230306_27230374 chr3R_27230375_27230410;chr3R_27230220_27230305 62.77 NA NA 58.33 NA NA 58.33 66.67 61.90 NA NA 70.00 NA NA NA 66.67 NA NA 55.56 81.82 NA NA NA NA NA NA NA NA NA NA NA NA NA 58.33 NA NA 60.00 NA NA 50.00 NA 66.67 NA NA NA NA NA NA 63.64 NA NA NA NA NA 81.82 NA NA NA K alternative_donor skd chr3L - chr3L_21018649_21020285;chr3L_21018649_21019229;chr3L_21018649_21020239 chr3L_21018649_21020395 chr3L_21018052_21018648;chr3L_21020396_21020501 60.39 NA NA 37.50 NA NA 54.55 66.67 63.64 NA NA 87.50 77.78 57.14 NA 70.59 NA NA NA 66.67 NA 75.00 50.00 NA NA NA 50.00 NA 20.00 50.00 NA NA 57.14 83.33 NA 80.00 NA NA NA 40.00 NA 75.00 83.33 25.00 NA NA NA 57.14 80.00 NA NA NA NA NA 33.33 NA NA NA K intron_retention CG7843,I_chr2R_1972736_1972822 chr2R - chr2R_1971513_1972012 chr2R_1971512_1971513;chr2R_1972012_1972013 chr2R_1971446_1971512;chr2R_1972013_1972292 2.56 0.00 4.26 3.12 4.88 2.38 1.33 5.10 2.88 0.00 0.00 0.00 7.27 0.00 1.82 2.74 1.92 4.65 3.51 1.20 0.00 0.00 5.08 1.92 0.00 2.44 6.12 0.00 3.33 3.12 5.26 0.00 0.00 5.88 4.26 0.00 0.00 9.09 8.51 2.94 0.00 3.74 10.26 5.13 0.00 2.27 0.00 0.00 4.44 3.92 3.64 0.00 0.00 6.67 3.23 2.56 1.61 4.17 K intron_retention Shawn_Tyler,CG14215 chrX + chrX_19547296_19547354 chrX_19547295_19547296;chrX_19547354_19547355 chrX_19546660_19547295;chrX_19547355_19547671 0.00 NA 0.00 0.00 NA NA 0.00 4.76 0.00 25.00 NA 0.00 NA NA NA NA NA 0.00 NA 5.88 NA NA 0.00 0.00 NA NA 8.00 0.00 NA 11.76 NA NA 12.50 0.00 NA 8.70 6.67 5.26 0.00 15.15 NA 0.00 NA 3.85 NA NA NA NA 0.00 NA 3.85 NA NA 0.00 0.00 NA NA NA N alternative_donor RpL5,I_chr2L_22427822_22428348,I_chr2L_22428750_22428846 chr2L - chr2L_22427796_22428348 chr2L_22427796_22428143 chr2L_22427722_22427795;chr2L_22428349_22428391 0.04 0.02 0.04 0.05 0.04 0.04 0.07 0.04 0.06 0.04 0.03 0.05 0.04 0.05 0.06 0.06 0.05 0.02 0.04 0.04 0.04 0.03 0.03 0.04 0.03 0.03 0.06 0.23 0.03 0.02 0.03 0.01 0.01 0.05 0.04 0.02 0.02 0.03 0.05 0.03 0.03 0.05 0.05 0.03 0.00 0.03 0.03 0.03 0.10 0.04 0.04 0.03 0.03 0.02 0.05 0.03 0.02 0.02 K intron_retention CG9346 chr2R + chr2R_16899608_16899666 chr2R_16899607_16899608;chr2R_16899666_16899667 chr2R_16899519_16899607;chr2R_16899667_16899783 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor Gs1l,I_chr2L_4456517_4456723,I_chr2L_4458058_4458120 chr2L - chr2L_4456517_4456725 chr2L_4456521_4456725 chr2L_4456726_4456801;chr2L_4456417_4456516 100.00 NA NA 100.00 NA NA NA NA 92.31 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA 87.50 NA NA 100.00 NA NA NA 87.50 100.00 88.89 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 88.89 NA 100.00 K intron_retention Atpalpha,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16794209_16798894 chr3R_16794208_16794209;chr3R_16798894_16798895 chr3R_16794114_16794208;chr3R_16798895_16798994 83.33 87.50 80.00 92.86 NA NA 92.31 92.31 95.00 NA 84.62 85.71 61.11 87.50 77.78 NA NA 83.33 90.00 94.12 NA 69.23 81.82 70.00 NA 85.71 75.00 62.50 NA NA 100.00 NA NA 82.35 NA NA NA NA NA 78.95 NA 92.86 NA 75.00 NA NA NA NA 73.33 NA NA NA NA NA 76.92 NA NA NA K intron_retention CG3632,RI_chrX_16195880_16196242 chrX + chrX_16193505_16193572 chrX_16193504_16193505;chrX_16193572_16193573 chrX_16193309_16193504;chrX_16193573_16193758 0.00 0.00 0.00 0.00 0.00 0.00 4.88 5.08 6.35 NA 0.00 1.89 0.00 8.00 12.00 0.00 0.00 0.00 0.00 2.99 0.00 2.94 1.47 0.00 3.23 0.00 4.17 12.50 0.00 0.00 0.00 NA 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.67 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 K mutually_exclusive ens,I_chr3L_4130719_4131120 chr3L - chr3L_4127163_4129650,chr3L_4129792_4131120;chr3L_4127163_4130388,chr3L_4130644_4131120 chr3L_4127163_4128307,chr3L_4128974_4131120 chr3L_4129651_4129791;chr3L_4130389_4130643 chr3L_4128308_4128973 chr3L_4126989_4127162;chr3L_4131121_4131220 1.23 0.97 1.11 0.72 1.23 1.08 1.03 0.76 0.55 2.74 1.18 0.67 1.37 1.22 1.08 1.64 1.14 1.67 1.23 0.63 1.37 0.65 1.27 1.63 1.01 1.10 1.64 3.12 2.97 0.87 0.88 3.23 1.50 0.68 1.96 1.59 0.56 1.57 2.08 0.52 6.02 1.02 2.74 1.46 3.26 2.30 2.47 1.37 0.70 1.79 0.65 1.05 2.94 1.82 0.98 1.20 2.17 2.63 K intron_retention capt,I_chr2L_1156009_1158078,I_chr2L_1153732_1157370,I_chr2L_1163632_1163759 chr2L - chr2L_1152116_1152176 chr2L_1152115_1152116;chr2L_1152176_1152177 chr2L_1152095_1152115;chr2L_1152177_1152194 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor pcs,F_chr2R_10877121_10877189 chr2R + chr2R_10868885_10877057 chr2R_10869329_10877057 chr2R_10877058_10877120;chr2R_10868782_10868884 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG11790,CG11791 chr3R + chr3R_20875669_20876354;chr3R_20875669_20876902 chr3R_20875669_20876344 chr3R_20875600_20875668;chr3R_20876903_20877278 39.06 35.29 43.33 39.06 35.48 42.86 28.85 29.82 56.25 22.22 46.15 29.82 35.14 44.83 44.74 58.82 48.39 35.14 41.86 44.62 48.00 43.48 26.92 37.84 45.83 44.12 44.44 38.46 37.14 39.39 46.34 50.00 55.00 44.83 41.94 18.75 34.15 36.00 39.39 35.44 46.94 28.57 32.00 48.15 22.22 36.21 47.62 16.98 67.80 18.00 37.21 26.92 34.38 45.16 40.43 33.33 31.25 12.68 K alternative_donor CG7177 chr3L - chr3L_21547281_21547480;chr3L_21547281_21547653 chr3L_21547281_21547665 chr3L_21547125_21547280;chr3L_21547666_21547994 7.14 NA 11.11 0.00 14.29 10.00 4.55 5.00 4.35 10.00 18.18 4.35 8.33 10.00 14.29 9.38 11.11 11.11 10.00 8.00 0.00 6.25 0.00 10.00 0.00 0.00 10.00 9.09 5.26 11.11 8.33 NA 5.00 0.00 0.00 0.00 7.14 0.00 0.00 6.25 NA 5.00 0.00 11.11 NA 0.00 16.67 5.26 10.00 NA 0.00 NA NA NA 14.29 NA NA 14.29 K alternative_acceptor Prp8,I_chr2R_8048796_8048851,I_chr2R_8050245_8050389 chr2R - chr2R_8048572_8048851 chr2R_8048796_8048851 chr2R_8048852_8048951;chr2R_8048472_8048571 0.00 0.00 0.00 0.00 0.00 0.00 1.65 0.66 1.05 0.00 0.00 0.68 1.98 1.12 0.00 0.67 0.00 0.00 1.94 1.69 1.52 0.00 0.00 0.00 0.00 1.32 0.00 0.00 1.47 0.00 2.78 0.00 1.33 0.70 0.00 0.00 0.00 0.00 1.64 2.05 0.00 1.35 0.00 0.78 0.00 0.00 0.00 0.00 1.44 0.00 0.00 0.00 0.00 0.00 1.06 3.12 2.86 1.61 K intron_retention Actn,I_chrX_1922061_1924247,I_chrX_1922784_1923873 chrX - chrX_1923960_1924247 chrX_1923959_1923960;chrX_1924247_1924248 chrX_1923905_1923959;chrX_1924248_1924347 11.76 NA NA 0.00 NA NA 18.18 NA 11.76 NA NA 23.08 NA NA NA 22.22 NA NA NA 13.04 NA 0.00 5.56 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 11.11 NA 15.00 NA 11.76 NA 0.00 NA NA 27.78 NA 13.33 NA NA NA NA NA NA NA K jcn_only_AD CG6597,noncoding_13714 chr3L + chr3L_20295938_20296166;chr3L_20295972_20296166 chr3L_20295603_20296166 chr3L_20296167_20296215;chr3L_20295573_20295602 94.34 NA NA 94.87 95.00 NA 94.74 92.86 92.98 NA NA 93.75 95.00 NA 96.77 96.97 100.00 NA 100.00 93.33 85.71 83.33 85.00 100.00 NA 95.00 NA NA NA NA 88.89 NA 95.24 88.89 NA NA 84.85 NA NA 91.67 NA 93.94 100.00 90.00 88.00 NA NA 95.24 87.50 NA NA NA NA NA 95.65 NA NA 97.56 K alternative_acceptor Upf2,I_chrX_7969268_7969358,I_chrX_7969312_7969358 chrX - chrX_7969312_7969358;chrX_7969268_7969358;chrX_7969293_7969358 chrX_7969303_7969358 chrX_7969359_7969458;chrX_7969212_7969267 42.86 25.00 50.00 28.57 60.00 44.44 46.67 16.67 60.00 33.33 NA 50.00 41.67 50.00 18.18 30.77 12.50 42.86 25.00 41.67 16.67 53.85 23.08 33.33 42.86 54.55 NA 33.33 57.14 33.33 54.55 NA 28.57 52.38 40.00 50.00 50.00 40.00 37.50 46.15 NA 55.00 50.00 44.44 50.00 NA NA 66.67 50.00 25.00 33.33 NA 80.00 NA 46.15 NA 20.00 25.00 K intron_retention CG9947,eIF-2alpha chrX - chrX_16333796_16333859 chrX_16333795_16333796;chrX_16333859_16333860 chrX_16333630_16333795;chrX_16333860_16334195 0.00 0.00 0.88 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.36 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 K alternative_donor alpha-Cat,I_chr3L_23319053_23319787,I_chr3L_23319057_23319748,I_chr3L_23319861_23321813,I_chr3L_23327841_23328002 chr3L - chr3L_23319057_23319787 chr3L_23319057_23319748 chr3L_23318989_23319056;chr3L_23319788_23319848 0.00 0.00 0.00 0.00 0.00 1.92 1.50 0.00 1.15 0.00 0.00 0.00 0.00 0.00 1.41 0.65 1.32 0.00 1.09 0.65 2.33 0.00 0.00 0.00 2.13 1.69 2.11 0.00 5.88 0.00 0.00 2.38 0.00 0.67 0.00 2.00 0.00 0.00 0.00 1.27 1.96 0.00 0.00 1.09 0.00 0.00 1.10 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG8445,I_chr2R_12083437_12083571,I_chr2R_12083437_12083760,I_chr2R_12083476_12083760 chr2R - chr2R_12083437_12083571 chr2R_12083506_12083571 chr2R_12083572_12083671;chr2R_12083376_12083436 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA 96.15 NA NA NA 100.00 NA NA 92.31 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA NA 97.96 95.45 100.00 NA NA NA 100.00 NA NA NA K jcn_only_AA CG30492,C_chr2R_3522706_3523025,RI_chr2R_3536203_3536977,I_chr2R_3543397_3543455 chr2R + chr2R_3528123_3535801 chr2R_3528123_3528336 chr2R_3527622_3528122;chr2R_3535802_3535913 3.78 5.26 0.00 0.00 5.88 2.86 4.35 1.39 6.93 9.38 10.00 5.48 3.03 12.90 5.88 1.92 4.17 3.57 4.26 12.50 0.00 3.17 0.00 0.00 0.00 3.64 4.55 NA 0.00 3.70 7.69 9.09 16.00 5.77 11.54 NA 3.28 10.00 2.56 4.44 0.00 2.70 0.00 6.67 11.11 0.00 2.38 0.00 7.25 0.00 3.85 NA 12.50 0.00 7.46 0.00 2.70 4.88 K jcn_only_AD Lam chr2L + chr2L_5542656_5543324;chr2L_5543273_5543324;chr2L_5542661_5543324 chr2L_5542864_5543324 chr2L_5543325_5543794;chr2L_5542527_5542655 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.43 1.08 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.68 0.00 0.00 0.00 1.03 0.00 0.00 0.00 K alternative_donor Pgi,I_chr2R_4800674_4800937,I_chr2R_4800693_4800761 chr2R - chr2R_4800693_4800937 chr2R_4800693_4800761 chr2R_4800593_4800692;chr2R_4800938_4801037 1.75 1.37 0.00 1.64 0.00 1.59 3.33 1.94 2.91 3.08 0.00 2.08 1.67 1.72 1.05 1.23 0.00 0.00 1.20 1.89 1.39 5.33 3.19 6.02 4.17 3.45 3.70 5.56 3.95 1.59 1.10 2.08 4.04 0.00 1.92 2.90 1.54 2.44 3.77 2.94 3.03 1.30 1.89 1.80 1.19 1.32 0.00 3.23 0.93 1.12 2.61 3.08 0.00 3.12 1.37 1.75 0.00 0.00 K cassette mnd chr3L + chr3L_14981350_14982948 chr3L_14981350_14981433;chr3L_14981516_14982948 chr3L_14981434_14981515 chr3L_14981173_14981349;chr3L_14982949_14983167 1.75 1.64 2.27 0.95 0.00 2.90 0.98 1.68 1.69 2.15 1.37 1.25 1.23 1.45 0.89 1.16 1.35 5.19 2.30 2.38 1.30 2.38 0.85 2.13 1.56 2.50 1.12 5.56 2.17 4.76 1.56 1.85 1.09 0.82 1.67 2.94 3.03 2.78 2.50 3.19 0.00 2.86 1.27 3.28 1.96 1.89 3.03 3.03 3.61 1.59 2.40 3.12 1.37 1.47 2.75 1.52 0.00 1.75 K intron_retention vlc chr2R + chr2R_1591722_1591790 chr2R_1591721_1591722;chr2R_1591790_1591791 chr2R_1590976_1591721;chr2R_1591791_1591887 0.00 2.56 0.00 6.58 0.00 0.00 1.52 3.90 1.98 0.00 0.00 0.00 0.00 7.41 0.00 6.90 0.00 0.00 4.44 2.90 3.45 0.00 5.88 0.00 7.69 0.00 25.81 9.52 0.00 0.00 0.00 0.00 0.00 1.27 10.53 23.81 0.00 0.00 0.00 2.44 NA 6.67 0.00 2.56 0.00 0.00 0.00 NA 2.00 0.00 2.17 0.00 0.00 3.23 0.00 0.00 0.00 0.00 K intron_retention ps,I_chr3R_5243723_5265067,I_chr3R_5243723_5270765,noncoding_15575,I_chr3R_5245770_5265067,I_chr3R_5245770_5269732,I_chr3R_5269733_5270765 chr3R + chr3R_5254375_5257750 chr3R_5254374_5254375;chr3R_5257750_5257751 chr3R_5254353_5254374;chr3R_5257751_5258205 23.81 22.22 20.00 22.22 30.77 33.33 15.22 14.29 24.19 50.00 11.54 23.21 19.35 23.81 21.88 26.53 23.81 23.08 25.00 21.15 13.33 56.76 17.78 24.00 15.00 37.50 35.71 31.58 21.43 50.00 26.32 NA 44.44 27.27 25.00 13.33 21.21 23.81 19.23 25.00 NA 27.91 55.00 21.88 NA 36.36 NA 63.16 16.28 NA 17.65 25.00 NA NA 18.52 NA NA NA K cassette norpA,I_chrX_4219265_4219380 chrX + chrX_4247647_4251072 chrX_4247647_4247976;chrX_4248057_4251072 chrX_4247977_4248056 chrX_4247500_4247646;chrX_4251073_4251309 72.73 91.67 85.71 26.67 77.78 71.43 50.00 76.00 90.91 53.33 NA 77.27 54.55 78.57 85.71 80.00 69.23 80.00 72.73 93.55 NA 66.67 74.07 64.29 72.73 90.00 55.56 NA 53.85 80.00 80.00 NA 59.09 90.91 71.43 7.14 80.00 66.67 78.57 56.25 NA 80.77 75.00 61.11 71.43 NA 50.00 66.67 75.86 50.00 64.00 80.00 NA NA 87.50 66.67 75.00 63.64 K alternative_donor ph-d chrX - chrX_2015658_2017014 chrX_2015658_2015729 chrX_2015184_2015657;chrX_2017015_2017061 6.67 7.69 0.00 3.85 7.69 6.67 8.33 3.70 6.67 0.00 9.09 7.69 10.00 5.56 7.69 5.56 9.09 11.11 4.76 8.33 0.00 6.67 5.88 8.33 11.11 0.00 9.09 25.00 10.00 5.26 7.69 NA 5.56 8.70 NA 0.00 0.00 NA 6.67 7.69 NA 4.35 0.00 5.88 NA 0.00 9.09 2.78 8.33 12.50 6.25 NA NA NA 8.33 10.00 NA 6.67 K cassette fry,I_chr3L_9636648_9656042 chr3L - chr3L_9627025_9627786 chr3L_9627025_9627503;chr3L_9627534_9627786 chr3L_9627504_9627533 chr3L_9626065_9627024;chr3L_9627787_9628413 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 2.56 NA NA NA NA NA NA 7.69 0.00 NA 5.00 2.63 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 2.38 0.00 3.57 3.45 2.56 0.00 2.70 NA 0.00 0.00 NA NA 0.00 0.00 K intron_retention fwd,RI_chr3L_319514_319746 chr3L - chr3L_314318_319746 chr3L_314317_314318;chr3L_319746_319747 chr3L_313024_314317;chr3L_319747_319846 38.46 27.78 58.82 42.86 NA 43.75 48.15 44.12 26.47 23.53 NA 42.42 35.29 29.41 28.57 25.00 29.41 31.25 29.17 34.21 31.25 42.86 34.15 43.75 43.75 69.23 42.86 38.46 35.71 23.08 30.00 NA 15.38 29.41 27.27 60.00 41.67 39.13 55.56 38.71 NA 35.48 50.00 33.33 NA NA NA 43.75 39.13 NA 29.17 41.18 NA NA 39.29 NA NA 38.46 K intron_retention chrb,I_chr3L_11481702_11483304 chr3L + chr3L_11481375_11481435 chr3L_11481374_11481375;chr3L_11481435_11481436 chr3L_11480660_11481374;chr3L_11481436_11481701 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 96.30 91.67 92.31 100.00 NA 100.00 95.45 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 K alternative_acceptor CG12582 chr3R + chr3R_23594_23980;chr3R_23594_23942 chr3R_23594_23930 chr3R_23459_23593;chr3R_23981_24494 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor vib,RI_chr3R_15051793_15051920,RI_chr3R_15051793_15052186 chr3R - chr3R_15051793_15051920;chr3R_15051793_15052186 chr3R_15051793_15052202 chr3R_15051737_15051792;chr3R_15052203_15052286 92.98 91.82 93.75 94.35 90.74 95.24 87.10 90.58 93.02 85.29 96.00 92.75 89.86 91.57 93.13 93.59 92.98 96.05 94.17 92.98 94.44 85.71 92.20 91.55 85.71 93.04 92.86 87.50 85.92 94.12 96.33 93.75 89.83 91.33 91.75 89.87 92.63 93.02 92.23 94.61 89.83 94.68 94.12 91.84 93.26 92.96 94.20 89.13 93.87 94.07 93.45 94.87 94.12 95.28 92.13 94.78 95.24 92.05 K intron_retention CG33969,I_chr3L_20390576_20390678 chr3L - chr3L_20386326_20386378 chr3L_20386325_20386326;chr3L_20386378_20386379 chr3L_20386251_20386325;chr3L_20386379_20386446 1.72 0.00 5.26 17.24 6.45 0.00 1.61 7.41 4.35 0.00 0.00 9.52 14.29 0.00 0.00 14.71 4.17 0.00 0.00 4.84 0.00 20.00 9.09 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 6.67 7.41 5.26 0.00 0.00 6.67 0.00 11.43 1.72 4.26 4.08 0.00 0.00 2.78 3.92 7.69 7.55 0.00 0.00 2.44 3.45 0.00 0.00 2.94 0.00 0.00 5.00 K intron_retention CG11009,I_chr3L_12844823_12845526,I_chr3L_12845441_12845526 chr3L + chr3L_12844254_12844408 chr3L_12844253_12844254;chr3L_12844408_12844409 chr3L_12844015_12844253;chr3L_12844409_12844822 2.14 2.90 0.00 0.68 0.00 0.00 4.88 2.04 1.81 1.89 0.00 3.57 0.00 5.26 4.21 5.26 0.00 1.59 3.28 2.66 0.00 4.43 1.65 2.45 2.48 9.09 0.00 2.15 4.08 3.28 3.80 0.00 2.60 1.64 2.27 2.74 1.07 2.40 2.14 4.35 3.85 1.79 0.00 2.82 1.52 3.27 1.17 3.48 3.31 1.81 2.00 0.00 2.70 0.59 2.33 1.15 0.97 0.78 K intron_retention larp,I_chr3R_24150390_24150531,F_chr3R_24151542_24153876,RI_chr3R_24160430_24161527 chr3R - chr3R_24151542_24159430 chr3R_24151541_24151542;chr3R_24159430_24159431 chr3R_24151442_24151541;chr3R_24159431_24160429 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RpS25,I_chr3R_7041333_7041414,I_chr3R_7041347_7041413,I_chr3R_7041347_7041556,RI_chr3R_7044164_7044221 chr3R - chr3R_7041347_7041414;chr3R_7041347_7041471 chr3R_7041347_7041556 chr3R_7041267_7041346;chr3R_7041557_7041598 0.10 0.11 0.17 0.18 0.09 0.08 0.07 0.14 0.10 0.10 0.10 0.16 0.09 0.15 0.07 0.17 0.10 0.04 0.11 0.13 0.07 1.91 0.10 0.08 0.03 0.22 0.07 0.22 0.12 0.10 0.08 0.07 0.12 0.11 0.11 0.07 0.07 0.08 0.09 0.17 0.06 0.13 0.10 0.04 0.05 0.06 0.13 0.04 0.12 0.31 0.08 0.03 0.04 0.07 0.12 0.07 0.02 0.06 K intron_retention CG2685,CG2701,RI_chrX_2612780_2612845,ttm50 chrX - chrX_2607655_2607710 chrX_2607654_2607655;chrX_2607710_2607711 chrX_2607529_2607654;chrX_2607711_2607858 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA 11.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 K intron_retention Eaat1 chr2L + chr2L_9338756_9338817 chr2L_9338755_9338756;chr2L_9338817_9338818 chr2L_9338588_9338755;chr2L_9338818_9338845 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 4.76 NA NA NA NA NA NA NA 8.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA K intron_retention CG33298 chr2L + chr2L_9515745_9515811 chr2L_9515744_9515745;chr2L_9515811_9515812 chr2L_9515565_9515744;chr2L_9515812_9515936 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 7.14 NA 0.00 2.38 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 1.85 NA NA 0.00 K alternative_acceptor Aats-val chr2R + chr2R_9086425_9086478 chr2R_9086425_9086465 chr2R_9086375_9086424;chr2R_9086479_9086689 36.18 25.00 36.36 29.17 63.64 12.50 54.17 52.63 41.67 NA 40.00 42.86 44.44 23.53 32.00 29.41 38.46 60.00 33.33 44.83 28.57 26.67 36.36 36.36 NA 34.78 NA 36.36 61.54 NA 36.00 NA NA 42.86 NA NA 20.00 NA 30.00 NA NA 41.18 26.67 36.36 14.29 NA NA NA 35.48 NA NA 25.00 NA NA 26.09 NA NA NA K alternative_donor Ntf-2,I_chrX_20906749_20909772 chrX + chrX_20907492_20907565 chrX_20907498_20907565 chrX_20907566_20907664;chrX_20907429_20907491 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.55 100.00 100.00 99.34 98.91 100.00 99.08 100.00 98.88 100.00 100.00 100.00 100.00 100.00 99.27 100.00 100.00 99.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.15 100.00 99.24 100.00 100.00 100.00 100.00 100.00 99.37 100.00 98.97 99.46 100.00 99.21 100.00 98.73 100.00 100.00 99.38 100.00 99.12 K intron_retention Atg8a,I_chrX_10659836_10659921,RI_chrX_10659836_10660127,I_chrX_10659836_10660362,I_chrX_10659836_10660406,I_chrX_10659836_10661133,E_chrX_10659836_10661147,I_chrX_10659836_10661185,noncoding_22965 chrX - chrX_10659836_10660406 chrX_10659835_10659836;chrX_10660406_10660407 chrX_10659736_10659835;chrX_10660407_10660462 41.67 NA NA 36.36 NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.84 46.15 NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 42.86 35.71 NA NA NA NA NA NA NA K jcn_only_AA Mpk2,I_chr3R_19977468_19977530,F_chr3R_19985127_19985197 chr3R - chr3R_19977468_19977567 chr3R_19977492_19977567 chr3R_19977568_19977630;chr3R_19977368_19977467 7.69 4.00 NA 2.56 NA NA 3.45 11.11 2.27 NA 7.69 7.50 8.33 NA 7.14 7.84 11.54 0.00 NA 13.64 0.00 9.52 17.65 14.29 5.00 10.34 7.69 28.57 11.11 0.00 2.50 6.45 13.04 11.90 4.76 26.09 9.09 NA 3.12 9.26 19.44 8.33 NA 13.89 7.50 7.14 6.67 15.00 15.69 NA 7.50 0.00 0.00 NA 6.06 5.56 3.45 12.24 K intron_retention endos,I_chr3L_14024099_14024488,I_chr3L_14024103_14024158,I_chr3L_14024103_14024546,noncoding_12505,I_chr3L_14024496_14024546 chr3L - chr3L_14024103_14024546 chr3L_14024102_14024103;chr3L_14024546_14024547 chr3L_14024003_14024102;chr3L_14024547_14024588 93.88 92.00 94.55 98.81 92.68 97.73 91.67 98.65 93.46 90.24 95.92 98.88 91.67 95.65 98.36 94.44 94.87 97.92 96.72 93.75 97.50 85.37 84.29 87.91 95.24 100.00 98.21 90.91 95.12 92.11 100.00 93.88 64.58 92.86 95.56 97.83 91.38 87.50 90.74 90.12 97.56 92.39 92.68 97.96 92.45 92.19 94.34 91.67 95.51 87.14 96.67 100.00 95.65 90.16 98.25 92.98 92.11 89.33 K intron_retention CG3386,CG3344,CG32483,Vti1 chr3L - chr3L_686528_686580 chr3L_686527_686528;chr3L_686580_686581 chr3L_686342_686527;chr3L_686581_687367 100.00 100.00 100.00 NA NA NA 100.00 NA 100.00 NA 90.91 100.00 NA 100.00 NA 100.00 NA NA 100.00 95.24 NA 88.89 100.00 91.67 NA 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 NA 93.75 100.00 100.00 100.00 92.31 100.00 92.31 NA 100.00 100.00 100.00 90.00 100.00 100.00 90.00 100.00 NA NA NA NA NA 100.00 100.00 K intron_retention CG17665 chr2R - chr2R_123683_123741 chr2R_123682_123683;chr2R_123741_123742 chr2R_123500_123682;chr2R_123742_123841 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 7.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pgi,I_chr2R_4800674_4800937,I_chr2R_4800693_4800761 chr2R - chr2R_4800693_4800937 chr2R_4800692_4800693;chr2R_4800937_4800938 chr2R_4800593_4800692;chr2R_4800938_4801037 1.23 2.70 1.33 2.44 3.03 0.00 2.52 2.88 1.18 1.56 0.00 2.08 0.00 0.00 2.08 0.00 0.00 0.00 1.20 0.00 0.00 7.19 2.15 1.27 4.17 3.45 4.88 5.56 0.00 3.12 1.10 2.08 2.06 0.84 0.00 1.47 2.29 1.23 2.86 0.75 0.00 1.94 0.00 0.91 0.00 3.85 1.69 3.23 0.00 0.00 3.45 0.00 0.00 0.00 0.00 3.45 0.00 0.00 K cassette CtBP chr3R + chr3R_8847365_8851110 chr3R_8847365_8850545;chr3R_8850767_8851110 chr3R_8850546_8850766 chr3R_8847142_8847364;chr3R_8851111_8851987 37.14 41.03 36.84 15.38 26.09 31.25 32.00 37.50 33.33 30.00 58.33 37.74 22.73 27.27 30.00 33.33 50.00 26.32 35.71 38.30 42.86 42.25 41.07 41.54 37.14 35.00 28.57 36.36 33.33 38.24 31.82 33.33 41.67 31.03 41.67 48.48 36.76 44.68 37.78 45.45 26.09 28.81 28.57 45.00 45.45 35.29 46.51 50.00 37.50 44.44 51.11 30.43 42.31 48.48 26.32 44.83 35.42 41.67 K jcn_only_AA CG8490 chr2R + chr2R_8222882_8222945 chr2R_8222882_8222936 chr2R_8222813_8222881;chr2R_8222946_8223775 47.62 NA 50.00 51.56 41.38 NA 63.64 38.10 40.62 NA 47.83 48.48 NA NA 41.67 45.71 NA 36.36 33.33 43.14 47.62 NA NA NA NA 47.62 NA NA NA NA 50.00 NA NA 51.43 NA NA NA NA NA NA NA 38.89 NA NA NA NA NA NA 50.00 NA NA NA NA NA 52.17 NA NA NA K alternative_donor Cctgamma chr3R + chr3R_12473409_12473557;chr3R_12473318_12473557;chr3R_12473479_12473557;chr3R_12473424_12473557;chr3R_12473464_12473557 chr3R_12473420_12473557 chr3R_12473558_12473651;chr3R_12473311_12473317 92.31 92.86 88.00 94.59 91.30 92.86 88.89 86.96 90.48 100.00 100.00 90.91 94.44 88.00 85.19 96.77 91.67 100.00 100.00 85.71 95.24 100.00 100.00 96.15 85.71 84.21 96.30 90.48 69.23 100.00 88.89 86.67 84.62 86.11 100.00 84.62 96.55 95.45 95.24 86.67 70.00 86.84 90.48 100.00 92.31 83.33 100.00 91.67 95.00 91.67 100.00 100.00 92.31 92.86 90.00 100.00 96.55 84.21 K jcn_only_AD CG6006 chr3R + chr3R_11983962_11984579;chr3R_11984036_11984579;chr3R_11984029_11984579;chr3R_11984018_11984579 chr3R_11984096_11984579 chr3R_11984580_11984637;chr3R_11983945_11983961 4.67 NA NA NA NA NA 9.09 NA 19.23 NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA 3.23 NA 4.35 NA NA NA NA NA NA NA K alternative_acceptor bip2,RI_chr4_481674_487126,RI_chr4_483144_483680,RI_chr4_486609_487126 chr4 - chr4_481112_481199 chr4_481147_481199 chr4_481200_481282;chr4_481043_481111 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 93.33 100.00 100.00 96.15 100.00 K intron_retention CG1129 chr3R + chr3R_640496_641008 chr3R_640495_640496;chr3R_641008_641009 chr3R_639961_640495;chr3R_641009_641687 2.29 3.45 2.94 4.17 2.17 3.85 3.60 4.93 2.48 0.00 2.50 2.55 9.23 0.00 0.00 3.42 4.76 4.94 1.27 1.32 0.00 9.71 3.03 2.50 0.00 0.00 1.10 1.89 0.00 3.57 2.11 0.00 0.00 0.74 0.00 3.64 3.33 2.63 1.77 4.00 1.82 3.25 0.00 3.70 0.00 0.99 0.00 4.48 4.22 1.96 3.70 2.99 0.00 0.00 3.26 0.00 2.29 0.00 K intron_retention CG17019,I_chr2R_8821104_8821171 chr2R - chr2R_8819048_8819106 chr2R_8819047_8819048;chr2R_8819106_8819107 chr2R_8818420_8819047;chr2R_8819107_8819246 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.73 0.00 0.00 0.00 0.00 0.00 0.00 5.26 2.50 27.03 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 2.22 0.00 0.00 0.00 0.00 0.00 K intron_retention MRP,F_chr2L_12727117_12736035 chr2L + chr2L_12724344_12724471 chr2L_12724343_12724344;chr2L_12724471_12724472 chr2L_12724206_12724343;chr2L_12724472_12724618 95.24 100.00 100.00 96.55 100.00 92.31 93.94 96.55 100.00 NA 92.31 97.96 94.44 100.00 100.00 97.78 94.12 100.00 100.00 100.00 88.89 100.00 92.68 100.00 95.24 88.89 96.55 95.24 85.37 100.00 94.12 87.50 94.37 100.00 78.95 80.39 92.86 90.00 96.43 94.59 92.86 97.14 100.00 84.09 88.89 92.86 100.00 97.78 94.44 92.31 94.12 100.00 93.33 NA 100.00 90.91 94.74 100.00 K alternative_acceptor Psi,RI_chr2R_12752536_12752596,I_chr2R_12753387_12753659 chr2R - chr2R_12752536_12752596;chr2R_12752539_12752596 chr2R_12752542_12752596 chr2R_12752597_12752696;chr2R_12752436_12752535 25.00 36.36 33.33 30.00 44.44 18.18 18.18 33.33 19.05 33.33 33.33 26.92 14.29 22.22 21.43 27.27 33.33 28.57 25.00 21.05 25.00 29.41 33.33 20.00 NA 21.43 28.57 28.57 14.29 20.83 33.33 33.33 20.00 26.32 NA 21.43 25.00 25.00 36.36 23.91 25.00 24.14 20.00 21.05 12.50 28.57 28.57 28.57 28.57 30.00 18.18 25.00 12.50 25.00 22.22 18.18 20.00 26.32 K intron_retention CG12206,I_chrX_3367405_3367523 chrX - chrX_3360241_3360302 chrX_3360240_3360241;chrX_3360302_3360303 chrX_3359913_3360240;chrX_3360303_3360368 0.00 0.00 10.00 3.33 NA NA 7.69 4.76 12.50 NA NA 8.70 NA NA NA 0.00 NA NA NA 4.35 NA 1.75 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 NA 0.00 0.00 0.00 0.00 18.18 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 14.29 NA 0.00 0.00 K intron_retention RI_chrX_8468338_8469380,I_chrX_8468338_8477573,CG12065,I_chrX_8469524_8477579,CE_chrX_8469528_8477573 chrX + chrX_8468441_8469386 chrX_8468440_8468441;chrX_8469386_8469387 chrX_8468351_8468440;chrX_8469387_8469480 62.02 54.55 60.00 NA NA 61.54 36.67 55.56 50.00 41.67 NA 62.50 33.33 61.54 71.43 70.83 80.00 NA 69.23 76.47 63.64 55.00 50.00 61.11 83.33 77.78 73.91 60.00 73.33 41.67 63.16 NA 53.85 52.63 63.64 NA 60.00 NA NA 74.07 81.82 52.17 88.89 64.29 NA 72.73 NA 81.25 65.22 54.55 56.25 53.85 70.00 NA 60.00 63.64 36.36 62.50 K intron_retention CG18812,I_chr2R_3617214_3617883,I_chr2R_3617214_3622585,noncoding_4991 chr2R - chr2R_3617214_3622881 chr2R_3617213_3617214;chr2R_3622881_3622882 chr2R_3617147_3617213;chr2R_3622882_3623125 14.77 12.12 19.40 29.27 17.39 17.86 14.29 13.85 14.12 14.29 24.39 18.75 6.56 11.48 15.71 12.79 14.75 15.52 14.29 13.04 25.00 33.33 11.54 14.81 21.82 12.20 20.47 23.08 16.07 14.77 8.70 17.39 18.18 10.66 15.00 17.54 18.89 10.11 17.00 16.54 14.81 10.45 8.20 13.73 22.22 12.68 8.47 14.44 8.89 16.36 17.70 20.63 5.88 15.62 10.81 11.76 13.33 7.79 K jcn_only_AA vig2 chr3R + chr3R_20949838_20950311 chr3R_20949838_20950293 chr3R_20949354_20949837;chr3R_20950312_20950498 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.30 0.45 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.27 0.00 0.00 0.79 0.00 0.27 0.00 0.00 0.20 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.32 0.00 0.00 0.00 K intron_retention PH4alphaEFB,spdo,I_chr3R_26304468_26304840,I_chr3R_26305150_26309614 chr3R + chr3R_26292097_26299755 chr3R_26292096_26292097;chr3R_26299755_26299756 chr3R_26292028_26292096;chr3R_26299756_26299950 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 3.45 0.63 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA l(2)k05819,I_chr2L_4396173_4396266 chr2L + chr2L_4396173_4396809 chr2L_4396173_4396266 chr2L_4396143_4396172;chr2L_4396810_4396906 0.83 0.00 0.00 0.83 2.78 0.00 0.81 4.55 0.00 6.67 1.22 4.17 6.67 1.47 1.52 0.95 1.72 0.00 0.00 0.67 0.00 7.69 1.47 2.99 0.00 0.00 1.35 0.00 0.00 0.00 10.17 0.00 0.00 0.94 0.00 0.00 1.72 7.89 0.00 0.00 NA 0.82 0.00 0.00 0.00 3.33 0.00 0.00 0.90 2.86 1.89 4.00 NA NA 1.18 10.00 3.23 NA K intron_retention mld chr3R + chr3R_20445958_20446100 chr3R_20445957_20445958;chr3R_20446100_20446101 chr3R_20445895_20445957;chr3R_20446101_20446835 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA K alternative_donor sqh,I_chrX_6118043_6119039,I_chrX_6118150_6118725,I_chrX_6118150_6118729,I_chrX_6118150_6118790,I_chrX_6118150_6118800 chrX - chrX_6118150_6118729;chrX_6118150_6119035;chrX_6118150_6119039;chrX_6118150_6118949 chrX_6118150_6118725 chrX_6118050_6118149;chrX_6119040_6119139 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6845,I_chr3L_148414_148465,I_chr3L_148414_148475,I_chr3L_148414_148489 chr3L + chr3L_148414_148461 chr3L_148413_148414;chr3L_148461_148462 chr3L_148350_148413;chr3L_148462_148555 12.77 7.41 18.52 14.52 12.50 0.00 2.78 16.95 11.49 NA 8.00 12.07 9.68 11.76 21.88 22.22 6.25 13.79 14.58 8.82 5.56 6.45 22.22 24.00 20.00 3.03 42.86 NA 13.04 9.09 7.81 25.00 25.00 13.89 20.00 26.67 15.38 14.29 14.29 9.09 16.00 12.50 11.43 20.00 8.33 6.67 6.67 14.81 21.05 9.09 16.67 8.70 7.69 NA 7.41 17.86 16.00 12.50 K intron_retention CG9396,CG9399,I_chr3R_5403032_5403329 chr3R - chr3R_5397123_5397210 chr3R_5397122_5397123;chr3R_5397210_5397211 chr3R_5397076_5397122;chr3R_5397211_5397275 45.45 NA NA NA NA NA NA NA 60.00 NA NA 46.15 NA NA NA 26.67 NA NA NA 36.84 77.78 NA NA NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA 54.55 NA NA 45.45 NA NA NA NA NA NA 29.41 NA 45.45 NA NA NA NA NA 45.45 NA K intron_retention CG42271,RI_chrX_14127297_14127804 chrX - chrX_14123271_14123331 chrX_14123270_14123271;chrX_14123331_14123332 chrX_14122537_14123270;chrX_14123332_14124661 0.00 0.00 0.00 19.05 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 3.23 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K cassette CG4266,I_chr2R_17052549_17053657 chr2R - chr2R_17054548_17055100 chr2R_17054548_17054676;chr2R_17054950_17055100 chr2R_17054677_17054949 chr2R_17054404_17054547;chr2R_17055101_17055688 19.61 10.00 19.23 19.61 13.79 16.00 12.12 18.75 12.68 31.58 12.00 30.00 8.57 19.05 17.24 31.58 18.52 15.62 15.38 17.81 16.67 64.71 19.70 22.22 36.00 29.03 25.53 44.19 31.37 18.42 12.77 26.83 28.00 14.29 20.00 32.50 23.08 21.15 22.73 19.51 25.00 19.67 13.04 17.74 30.19 17.78 21.43 21.43 20.31 25.86 25.00 18.92 14.29 34.78 25.93 18.92 13.16 11.59 K intron_retention CG31159 chr3R + chr3R_18439619_18439682 chr3R_18439618_18439619;chr3R_18439682_18439683 chr3R_18439532_18439618;chr3R_18439683_18439845 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG33558,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,I_chr2R_2820149_2820628,EI_chr2R_2820947_2821570,CREI_chr2R_2832933_2850384 chr2R - chr2R_2817876_2818978 chr2R_2817875_2817876;chr2R_2818978_2818979 chr2R_2817851_2817875;chr2R_2818979_2819008 38.46 50.00 50.00 47.06 NA NA 80.00 76.92 39.39 NA NA 40.00 NA NA 31.25 76.92 53.33 NA 63.64 33.33 NA 63.16 25.00 28.00 NA NA 25.00 NA 47.06 77.27 50.00 27.78 38.89 50.00 36.36 25.81 16.67 20.00 29.17 42.55 37.50 38.46 36.36 42.86 26.92 31.82 23.81 42.11 38.89 23.08 23.53 NA 26.32 26.67 50.00 29.63 19.05 51.72 K jcn_only_AD CG1599,I_chr2R_5729744_5729805 chr2R - chr2R_5729673_5729805 chr2R_5729673_5729801 chr2R_5729644_5729672;chr2R_5729806_5729905 2.29 2.68 1.98 3.41 1.64 1.15 2.27 1.05 1.69 2.78 2.94 1.09 0.91 4.12 5.04 1.17 1.18 3.41 3.45 1.03 4.94 4.00 2.19 1.47 0.00 2.48 3.01 4.76 2.04 1.45 2.29 1.59 2.50 4.63 0.00 1.56 2.04 3.16 2.99 2.36 2.22 2.01 2.06 2.41 5.88 1.05 0.85 5.41 3.05 4.08 2.08 5.48 0.00 1.61 3.60 2.52 2.61 7.50 K intron_retention RpS15 chr2R - chr2R_12458354_12458421 chr2R_12458353_12458354;chr2R_12458421_12458422 chr2R_12458131_12458353;chr2R_12458422_12458510 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.02 0.00 0.22 0.07 0.00 0.00 0.00 0.03 0.07 0.00 0.00 0.02 0.00 0.03 0.00 0.04 0.00 0.00 0.09 0.07 0.98 0.00 0.08 0.00 0.12 0.00 0.06 0.00 0.04 0.00 0.04 0.04 0.00 0.00 0.00 0.00 0.06 0.00 0.05 0.00 0.13 0.00 0.03 0.00 0.02 0.00 0.04 0.04 0.02 0.00 K intron_retention CG2658 chrX - chrX_2590292_2590353 chrX_2590291_2590292;chrX_2590353_2590354 chrX_2590021_2590291;chrX_2590354_2590890 0.00 0.00 1.45 1.35 0.00 0.00 1.72 0.00 2.04 0.92 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.58 0.00 0.88 1.36 0.00 0.00 2.04 2.94 1.85 1.33 0.82 0.00 0.74 0.24 0.00 1.60 0.00 0.00 0.00 0.50 0.31 0.79 0.00 4.08 0.00 0.00 0.33 1.89 0.38 2.00 3.03 0.81 0.00 0.00 0.00 0.00 0.00 1.32 0.00 K alternative_acceptor jet chr2L - chr2L_4948560_4948897 chr2L_4948772_4948897 chr2L_4948898_4949817;chr2L_4948202_4948559 18.18 17.65 23.08 NA NA NA 46.15 18.18 21.05 23.08 NA 23.53 NA NA 9.09 NA NA 14.29 NA 15.00 NA 58.82 16.67 14.29 33.33 NA 20.00 12.50 30.77 18.18 NA 23.08 14.29 7.14 10.00 45.45 20.69 15.00 21.43 23.08 NA 21.05 NA 23.53 9.52 17.65 10.53 NA 10.53 15.00 15.00 NA 22.22 14.29 NA 21.43 8.33 NA K intron_retention Top3alpha chr2L + chr2L_19499094_19499145 chr2L_19499093_19499094;chr2L_19499145_19499146 chr2L_19498460_19499093;chr2L_19499146_19499607 0.00 0.00 0.00 7.55 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 2.22 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA cwo,noncoding_15870,chr3R_6215619_6216520.0,chr3R_6216827_6217291.0,chr3R_6217556_6219555.0,chr3R_6219984_6221958.0 chr3R + chr3R_6215160_6222426;chr3R_6215160_6222418 chr3R_6215160_6222423 chr3R_6214846_6215159;chr3R_6222427_6222542 1.92 0.00 NA 0.00 NA NA NA 3.85 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 3.57 NA 0.00 2.04 3.23 NA NA 0.00 NA 3.03 2.78 NA NA 0.00 3.45 3.70 0.00 2.86 4.00 0.00 2.44 0.00 0.00 NA 0.00 NA NA NA 2.00 3.12 2.70 0.00 0.00 NA NA 4.76 NA NA 1.92 N jcn_only_AA None chrU - chrU_5771595_5771684 chrU_5771599_5771684 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.17 100.00 100.00 98.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.15 98.42 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention lok,RI_chr2L_20063248_20063377 chr2L + chr2L_20063613_20063671 chr2L_20063612_20063613;chr2L_20063671_20063672 chr2L_20063378_20063612;chr2L_20063672_20064378 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Atet,chr2L_4334987_4335394.0,chr2L_4335788_4336447.0 chr2L + chr2L_4334105_4336500 chr2L_4334105_4336449 chr2L_4333926_4334104;chr2L_4336501_4336957 94.59 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 94.59 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor vap,RI_chrX_15897976_15899352,I_chrX_15897976_15899654,I_chrX_15898011_15899654,I_chrX_15898427_15899017,RI_chrX_15898427_15899654,RI_chrX_15899237_15899352,I_chrX_15899237_15899654 chrX - chrX_15898427_15899654 chrX_15898427_15899352 chrX_15898361_15898426;chrX_15899655_15899705 100.00 90.00 100.00 87.50 90.91 100.00 100.00 96.43 97.37 100.00 100.00 94.74 100.00 93.33 92.31 97.14 95.00 100.00 100.00 100.00 90.00 100.00 93.33 100.00 100.00 100.00 85.71 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 90.00 100.00 95.45 85.71 96.55 100.00 90.91 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette Dyrk3,I_chr4_1233845_1234170 chr4 - chr4_1233845_1234172 chr4_1233845_1234031;chr4_1234117_1234172 chr4_1234032_1234116 chr4_1233745_1233844;chr4_1234173_1234205 36.03 NA NA 66.67 NA NA 26.32 NA 35.71 NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 18.18 NA NA NA NA NA NA 46.15 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG10737 chr2R + chr2R_15062814_15063752;chr2R_15062814_15063692 chr2R_15062814_15063770 chr2R_15062592_15062813;chr2R_15063771_15063852 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9390195;chr2R_9389597_9390151;chr2R_9389597_9389907;chr2R_9389597_9389940;chr2R_9389597_9390293;chr2R_9389597_9389751;chr2R_9389597_9390264;chr2R_9389597_9389757 chr2R_9389597_9389753 chr2R_9389497_9389596;chr2R_9390294_9390295 1.33 1.61 0.00 1.96 0.00 0.00 0.00 0.00 1.25 0.00 0.00 2.63 0.00 0.00 1.20 1.74 5.26 1.10 1.06 3.06 1.33 0.00 2.83 2.74 1.69 2.74 1.41 0.00 3.70 0.00 0.00 0.00 2.33 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 3.12 2.63 1.64 5.88 1.96 1.49 1.64 1.39 1.54 2.99 0.00 2.38 3.33 0.95 1.75 K intron_retention Vha26 chr3R + chr3R_1418503_1418580 chr3R_1418502_1418503;chr3R_1418580_1418581 chr3R_1418290_1418502;chr3R_1418581_1418907 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 K intron_retention CG31033,RI_chr3R_25658089_25658914 chr3R - chr3R_25658071_25658914 chr3R_25658070_25658071;chr3R_25658914_25658915 chr3R_25657989_25658070;chr3R_25658915_25659003 12.86 8.89 19.44 33.33 13.64 11.76 21.88 12.86 11.84 18.52 6.67 14.29 20.59 14.29 7.27 25.58 12.90 13.16 11.11 8.97 14.71 14.29 15.69 3.85 23.08 20.00 10.42 13.16 29.79 13.04 14.29 10.42 14.75 12.12 4.65 31.03 11.43 6.67 15.87 9.21 13.04 12.12 12.50 8.51 11.76 9.64 8.82 10.71 14.94 15.56 9.52 14.29 6.25 11.76 7.55 2.70 10.87 13.89 K multi_cassette CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2439831_2444498 chr3L_2439831_2442435;chr3L_2442961_2443389;chr3L_2443839_2443987;chr3L_2444088_2444498 chr3L_2442436_2442960;chr3L_2443390_2443838;chr3L_2443988_2444087 chr3L_2439731_2439830;chr3L_2444499_2446101 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N intron_retention cul-2,RI_chr2L_21657668_21657832,noncoding_4226,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21656588_21657832 chr2L_21656587_21656588;chr2L_21657832_21657833 chr2L_21656493_21656587;chr2L_21657833_21657932 100.00 NA NA 100.00 NA NA 87.50 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA K alternative_donor NijA chr3L - chr3L_10688516_10688728 chr3L_10688516_10688577 chr3L_10688432_10688515;chr3L_10688729_10688804 0.00 3.12 0.00 6.67 NA 0.00 0.00 2.50 6.06 NA NA 0.00 NA 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 2.08 3.57 0.00 0.00 6.06 0.00 3.85 0.00 3.23 0.00 4.08 2.63 0.00 0.00 0.00 0.00 0.00 0.00 2.13 2.38 NA 0.00 0.00 2.60 0.00 1.67 1.85 0.00 6.67 0.00 0.00 0.00 0.00 0.00 2.70 0.00 K jcn_only_AA nct,I_chr3R_20679262_20679308 chr3R + chr3R_20679809_20680083 chr3R_20679809_20679946 chr3R_20679598_20679808;chr3R_20680084_20680151 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 99.52 100.00 100.00 100.00 100.00 100.00 98.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.48 100.00 K alternative_acceptor CaMKI,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,RI_chr4_467374_467424,RI_chr4_467482_467543,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_467378_467446 chr4_467378_467424 chr4_467354_467377;chr4_467447_467481 17.65 15.38 NA 42.86 NA NA 26.09 13.64 17.65 NA NA 40.00 17.65 12.50 NA 8.00 NA NA 33.33 23.53 NA NA 27.27 NA NA NA NA NA NA NA 21.05 NA NA 25.00 NA NA NA NA NA 12.50 NA 23.81 16.67 NA NA NA NA NA 21.62 NA 15.38 NA NA NA 11.76 NA 13.33 NA N alternative_donor CG8678,RI_chr2L_21213167_21213227 chr2L - chr2L_21214648_21220259 chr2L_21214648_21215016 chr2L_21213917_21214647;chr2L_21220260_21220516 28.21 21.21 21.88 16.95 14.29 16.67 23.40 12.50 24.14 29.41 15.62 17.74 23.33 18.52 26.67 17.65 20.00 52.17 20.59 31.91 31.82 28.21 33.33 37.50 35.71 24.24 34.62 38.10 38.10 47.06 22.22 35.29 46.15 21.15 21.43 47.06 42.86 33.33 35.71 33.33 36.84 20.31 21.43 21.88 45.00 38.10 31.58 47.83 26.53 20.69 33.33 22.73 33.33 35.71 18.42 43.75 21.43 54.55 K intron_retention Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654157,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15646506_15646573 chrX_15646505_15646506;chrX_15646573_15646574 chrX_15646426_15646505;chrX_15646574_15646755 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 2.86 0.00 0.00 1.64 3.28 0.00 2.04 2.25 0.00 0.00 2.90 0.90 0.00 0.00 2.94 0.00 2.27 1.35 2.35 4.08 2.38 0.00 2.67 0.00 0.00 3.51 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 1.39 1.18 0.00 2.33 0.00 0.00 1.06 1.30 0.00 0.00 N alternative_donor CG11151 chrX + chrX_13634146_13634710;chrX_13634652_13634710 chrX_13634528_13634710 chrX_13634711_13635156;chrX_13633982_13634145 0.23 0.00 0.21 0.17 0.41 0.00 0.28 0.32 0.46 0.00 0.00 0.27 0.45 0.34 0.22 0.26 0.38 0.35 0.25 0.24 0.33 0.38 0.23 0.22 0.38 0.00 0.23 0.33 0.00 0.00 1.02 0.19 0.11 0.17 0.00 0.00 0.21 0.23 0.62 0.15 0.00 0.26 0.30 0.00 0.11 0.00 0.20 0.00 0.29 0.31 0.85 0.47 0.23 0.27 0.22 0.00 0.13 0.08 K jcn_only_AD Nrg,I_chrX_8411470_8425729,RI_chrX_8411636_8425729,RI_chrX_8412432_8425557 chrX + chrX_8411668_8425729;chrX_8411543_8425729 chrX_8411454_8425729 chrX_8425730_8425829;chrX_8411428_8411453 87.50 NA NA 90.48 NA NA NA 90.00 87.50 NA NA 90.91 NA NA NA 68.97 NA NA NA 89.66 NA NA NA NA NA NA NA NA NA NA 87.50 NA 72.00 84.38 NA NA NA NA NA NA NA 91.67 NA NA NA NA NA 47.83 92.59 NA NA NA NA NA NA NA NA 59.09 K jcn_only_AA CG4065,RI_chr2R_20024231_20024292,I_chr2R_20024873_20024921 chr2R - chr2R_20024859_20024921 chr2R_20024873_20024921 chr2R_20024922_20025021;chr2R_20024773_20024858 1.90 3.92 0.00 1.33 0.00 4.17 1.52 5.88 0.97 4.88 0.00 0.00 0.00 0.00 5.45 0.00 2.63 1.92 0.00 0.83 0.00 5.17 1.72 2.90 1.61 0.00 3.90 0.00 2.20 2.41 9.23 4.05 5.31 0.00 0.00 1.56 1.25 3.45 1.39 1.90 3.75 1.90 0.00 4.00 1.41 2.22 1.41 6.44 1.16 1.92 0.00 0.00 2.63 5.13 3.12 3.39 2.00 2.67 K intron_retention RI_chrX_1796525_1796585,mip130,I_chrX_1820956_1821011,CG11596 chrX + chrX_1821927_1822366 chrX_1821926_1821927;chrX_1822366_1822367 chrX_1821726_1821926;chrX_1822367_1822613 81.94 80.95 93.75 75.00 91.67 64.71 81.82 84.00 82.05 76.92 91.67 100.00 93.33 86.67 85.00 78.95 91.67 94.44 88.24 79.41 86.67 75.00 94.74 100.00 81.82 80.95 83.33 88.89 68.75 72.22 48.57 75.00 74.07 72.00 78.95 75.00 88.46 77.78 85.71 85.19 83.33 80.00 92.31 68.42 60.00 78.95 90.91 47.62 87.10 68.42 81.82 NA 91.67 68.42 94.44 88.89 90.91 71.43 K intron_retention CG15881,RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19799733_19799785 chr3L_19799732_19799733;chr3L_19799785_19799786 chr3L_19799610_19799732;chr3L_19799786_19800032 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 11.76 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 K alternative_donor CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806824_22809684;chr3R_22806314_22809684 chr3R_22806425_22809684 chr3R_22809685_22809939;chr3R_22806256_22806313 49.07 42.86 53.54 49.48 50.79 62.71 51.69 48.67 37.63 25.00 32.91 25.79 49.07 44.35 51.56 45.74 41.94 63.03 32.00 56.59 60.55 54.72 50.75 47.69 41.86 47.96 48.28 57.14 51.22 53.33 45.93 57.38 55.84 38.34 48.98 63.89 62.50 55.88 56.52 42.70 62.90 43.05 47.06 45.45 40.54 52.94 51.28 42.71 47.06 38.89 57.47 59.09 47.22 33.33 51.97 42.62 65.67 50.00 K intron_retention MB8.chr3R.pasa.66,ref1,RI_chr3R_2904130_2904237,RI_chr3R_2904305_2904543,I_chr3R_2904452_2904543 chr3R - chr3R_2904130_2904543 chr3R_2904129_2904130;chr3R_2904543_2904544 chr3R_2904030_2904129;chr3R_2904544_2904643 5.28 3.83 5.19 10.34 5.45 6.09 5.34 4.58 3.92 4.10 6.80 6.87 11.11 3.26 5.56 13.92 2.97 2.78 7.14 5.28 3.39 15.17 4.22 2.92 6.49 7.69 10.61 10.53 5.77 8.20 6.11 6.35 6.48 6.54 4.90 5.67 2.92 3.79 2.95 3.90 4.35 5.14 7.23 3.53 3.76 2.28 4.31 6.21 6.20 6.00 6.78 4.84 2.40 2.95 6.49 4.00 2.17 3.50 K intron_retention CG31855 chr2L + chr2L_13369319_13369385 chr2L_13369318_13369319;chr2L_13369385_13369386 chr2L_13369210_13369318;chr2L_13369386_13370334 94.44 NA 88.89 96.15 NA NA 100.00 95.00 94.74 NA NA 94.44 NA 87.50 NA 82.61 NA NA 100.00 94.74 NA NA 93.33 100.00 83.33 100.00 100.00 100.00 100.00 NA NA NA NA 91.67 NA NA NA NA 90.91 NA NA 93.75 NA 87.50 NA 90.91 91.67 NA 100.00 100.00 100.00 NA NA 93.33 90.00 90.91 NA NA K alternative_acceptor alpha-Man-I,I_chrX_10218352_10219759,I_chrX_10218390_10219759 chrX - chrX_10218352_10219846;chrX_10218390_10219846 chrX_10218575_10219846 chrX_10219847_10219859;chrX_10218290_10218351 40.00 NA NA NA NA NA NA 33.33 50.00 NA NA NA NA NA NA 37.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG8388 chr2R - chr2R_11897651_11897713 chr2R_11897660_11897713 chr2R_11897714_11898660;chr2R_11897278_11897650 95.45 NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 96.15 NA NA NA NA NA 90.48 NA NA NA NA NA NA NA 95.45 NA NA NA NA 95.65 NA NA NA NA NA NA NA NA NA 95.00 95.45 NA NA NA NA NA NA 95.45 NA K intron_retention rhea,I_chr3L_8563622_8564067 chr3L + chr3L_8565778_8565997 chr3L_8565777_8565778;chr3L_8565997_8565998 chr3L_8565118_8565777;chr3L_8565998_8566572 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.96 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 K jcn_only_AA SNF1A chrX + chrX_1269789_1269902 chrX_1269789_1269894 chrX_1269580_1269788;chrX_1269903_1270220 100.00 96.30 100.00 100.00 100.00 100.00 100.00 98.44 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 98.15 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 97.14 100.00 100.00 100.00 98.33 98.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG17683,I_chr2R_18774_18869,I_chr2R_19002_19060 chr2R + chr2R_19002_19064 chr2R_19001_19002;chr2R_19064_19065 chr2R_18902_19001;chr2R_19065_19124 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 98.59 100.00 100.00 100.00 100.00 100.00 97.30 97.92 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 96.92 100.00 100.00 96.30 100.00 95.65 100.00 98.33 100.00 100.00 97.62 100.00 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD akirin,I_chr3L_7363173_7364806,I_chr3L_7363177_7364806,I_chr3L_7363177_7364831,I_chr3L_7363211_7364831,I_chr3L_7363731_7364806,I_chr3L_7364126_7364806,RI_chr3L_7364737_7364806 chr3L + chr3L_7363177_7364831;chr3L_7363211_7364831 chr3L_7363169_7364831 chr3L_7364832_7364906;chr3L_7363111_7363168 91.89 NA NA NA NA NA NA 90.91 92.50 NA NA 95.83 95.00 95.65 NA 93.62 NA NA NA 90.32 NA 91.30 92.86 90.91 NA NA NA 95.24 NA 92.11 100.00 NA 90.77 84.00 NA NA 84.00 NA NA 91.67 NA 93.33 NA NA NA 90.48 NA NA 86.96 92.68 90.91 NA NA NA NA NA NA NA K cassette pan chr4 + chr4_115242_120031;chr4_115629_120031 chr4_115242_118447,chr4_115629_118447;chr4_118602_120031 chr4_118448_118601 chr4_115049_115241;chr4_120032_120101 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 1.54 0.00 0.00 3.70 0.00 0.00 0.00 0.00 10.53 0.00 2.86 0.00 NA 2.44 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 NA 0.00 0.00 2.17 2.44 NA 0.00 0.00 NA NA 0.00 NA NA NA K jcn_only_AD sta chrX - chrX_1376949_1377290;chrX_1376949_1377143 chrX_1376949_1377164 chrX_1376851_1376948;chrX_1377291_1377379 0.42 1.06 0.48 0.24 0.36 0.17 0.61 0.30 0.37 1.05 0.41 0.35 0.29 0.37 0.29 0.42 0.50 0.37 0.27 0.22 0.31 0.83 2.82 2.32 0.92 0.29 1.14 0.16 0.66 0.44 1.93 0.41 0.14 0.34 2.19 1.11 0.98 1.76 1.59 0.12 0.40 0.32 0.23 0.15 0.39 0.44 1.36 0.18 0.47 1.79 3.46 0.96 0.42 4.72 0.37 1.37 1.89 0.27 N cassette cv-2 chr2R - chr2R_17246690_17254167 chr2R_17246690_17251203;chr2R_17251293_17254167 chr2R_17251204_17251292 chr2R_17246596_17246689;chr2R_17254168_17254445 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 87.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG18619,RI_chr2L_10264634_10264691,RI_chr2L_10264634_10264699,I_chr2L_10264634_10264770,RI_chr2L_10265562_10265628 chr2L + chr2L_10264265_10264551 chr2L_10264265_10264548 chr2L_10264122_10264264;chr2L_10264552_10264633 28.19 11.11 23.26 29.85 26.67 25.00 23.21 28.05 24.04 NA 33.33 26.56 35.85 28.57 25.49 28.33 38.71 21.82 30.30 41.67 33.33 26.79 46.15 47.83 30.77 18.75 65.00 47.06 35.71 37.50 22.64 26.47 21.33 16.92 24.00 34.62 54.05 8.77 47.06 36.84 30.00 30.14 17.65 20.90 20.83 26.19 48.00 22.73 24.18 41.18 43.33 15.22 52.63 39.02 25.45 14.10 40.48 21.15 K intron_retention Mdh chr3R + chr3R_22980113_22980177 chr3R_22980112_22980113;chr3R_22980177_22980178 chr3R_22979938_22980112;chr3R_22980178_22981227 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG31919,CG33995,F_chr2L_5045484_5046146 chr2L + chr2L_5043384_5044306;chr2L_5043384_5044582 chr2L_5043384_5045821 chr2L_5043377_5043383 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 99.31 98.88 100.00 99.42 100.00 100.00 100.00 100.00 100.00 100.00 98.65 100.00 100.00 100.00 100.00 98.68 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG5792,F_chr2L_12714547_12714695 chr2L - chr2L_12714297_12721450 chr2L_12714296_12714297;chr2L_12721450_12721451 chr2L_12713875_12714296;chr2L_12721451_12721525 15.38 NA NA 25.00 NA NA NA NA 15.79 NA NA 15.38 NA NA NA NA NA NA NA 15.00 NA 36.36 12.50 NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA K intron_retention Cam,I_chr2R_8161049_8161270 chr2R + chr2R_8147694_8152247 chr2R_8147693_8147694;chr2R_8152247_8152248 chr2R_8147545_8147693;chr2R_8152248_8152422 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.09 0.00 0.00 0.13 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.30 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention hipk,RI_chr3L_548068_552227 chr3L + chr3L_569817_569878 chr3L_569816_569817;chr3L_569878_569879 chr3L_569527_569816;chr3L_569879_570199 0.35 0.72 1.33 1.72 0.00 0.53 0.00 1.11 0.59 0.00 0.00 1.09 0.00 1.01 0.00 0.44 0.00 0.00 0.00 0.49 0.00 1.38 0.66 0.53 0.46 0.52 0.78 3.78 0.46 0.00 0.00 0.00 0.00 1.40 0.00 0.70 0.34 0.27 0.53 0.69 0.00 0.35 0.00 0.59 0.00 1.48 0.69 0.83 0.51 0.00 0.22 0.00 0.00 0.00 0.00 0.78 0.00 0.00 K intron_retention CG4996,E_chr2R_13627553_13627643,I_chr2R_13629549_13629609 chr2R + chr2R_13627550_13627643 chr2R_13627549_13627550;chr2R_13627643_13627644 chr2R_13627455_13627549;chr2R_13627644_13627743 0.00 NA NA 11.11 NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention Tsp42Ee,RI_chr2R_2904593_2904783 chr2R + chr2R_2904593_2904751 chr2R_2904592_2904593;chr2R_2904751_2904752 chr2R_2904518_2904592;chr2R_2904752_2904880 99.90 99.93 99.93 99.85 99.92 99.71 99.94 99.96 99.83 99.87 99.93 99.91 99.92 99.91 99.78 99.84 99.92 99.84 99.93 99.94 100.00 99.72 99.91 99.95 99.90 99.91 99.94 99.77 100.00 99.76 99.83 99.88 99.48 99.95 99.91 99.90 99.81 99.80 99.84 99.63 100.00 99.96 99.79 99.90 99.60 99.94 99.89 100.00 99.83 99.90 99.94 99.92 99.87 99.91 99.80 99.80 99.96 99.86 K intron_retention CG2811,I_chr2R_20828961_20829772 chr2R - chr2R_20827366_20827428 chr2R_20827365_20827366;chr2R_20827428_20827429 chr2R_20827302_20827365;chr2R_20827429_20827526 97.50 100.00 97.37 95.65 100.00 97.14 97.50 98.11 98.36 93.33 100.00 98.48 100.00 97.06 97.87 98.25 92.00 96.97 100.00 95.51 97.22 87.50 97.06 97.78 95.83 100.00 96.43 100.00 100.00 92.86 97.83 91.67 95.24 97.92 100.00 95.83 96.15 95.83 96.88 93.10 100.00 94.12 89.66 100.00 100.00 97.56 97.83 100.00 100.00 96.88 97.37 100.00 96.00 100.00 97.44 93.88 98.00 100.00 K alternative_acceptor Cf2,I_chr2L_4882802_4882864 chr2L - chr2L_4882802_4882864;chr2L_4882366_4882864 chr2L_4882493_4882864 chr2L_4882865_4882964;chr2L_4881215_4882365 75.00 75.00 57.14 64.29 85.71 66.67 33.33 75.00 72.22 88.89 85.71 78.95 75.00 75.00 87.50 57.14 66.67 50.00 62.50 77.78 83.33 80.56 84.21 54.55 70.00 75.00 78.57 60.00 77.78 90.91 71.43 76.92 81.25 60.00 80.00 77.78 75.00 88.89 54.55 73.33 81.82 72.73 40.00 66.67 73.33 76.92 62.50 78.38 70.59 75.00 66.67 57.14 100.00 83.33 77.78 66.67 50.00 84.00 K alternative_donor CG12946,noncoding_15730,I_chr3R_5599701_5600032,I_chr3R_5609682_5609889 chr3R - chr3R_5599701_5600041 chr3R_5599701_5600032 chr3R_5599601_5599700;chr3R_5600042_5600132 66.67 NA NA NA NA NA NA NA 56.25 NA NA 91.67 NA NA 60.00 NA NA NA NA 70.00 NA NA NA NA NA NA 55.56 NA NA 75.00 NA NA NA NA NA NA NA NA 69.23 61.54 NA 66.67 NA NA NA NA NA NA 77.78 NA 55.56 NA NA NA NA NA NA NA K alternative_acceptor RpS3A,I_chr4_87364_87465,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87648_87717;chr4_87533_87717 chr4_87549_87717 chr4_87718_87817;chr4_87466_87532 25.92 26.86 32.97 32.71 10.24 33.01 11.86 NA 19.25 40.80 NA 23.03 NA 14.33 NA 28.94 NA 25.73 41.13 34.73 17.54 19.87 27.80 26.15 26.07 32.64 22.32 26.32 41.55 28.57 15.42 14.70 19.16 17.66 25.50 NA 32.61 42.20 18.05 11.95 15.64 17.56 NA 14.16 32.61 23.60 18.60 27.03 25.77 38.03 41.63 7.05 35.57 35.76 41.91 14.12 12.32 27.33 K alternative_donor I_chr2R_7171366_7171418,fbl6,dare chr2R - chr2R_7176066_7176572;chr2R_7176066_7177174 chr2R_7176066_7176897 chr2R_7175150_7176065;chr2R_7177175_7177253 72.41 77.78 63.16 73.53 70.00 70.59 77.78 79.41 68.42 63.64 40.00 58.62 85.71 64.29 70.00 62.96 88.24 78.57 69.57 77.27 75.00 69.23 80.77 87.50 69.23 71.43 73.91 66.67 78.57 76.47 78.95 63.64 69.23 72.41 81.25 66.67 68.18 73.33 80.00 69.23 55.56 82.35 50.00 70.59 75.00 76.92 80.00 68.18 74.36 71.43 73.91 77.78 50.00 72.73 77.78 80.00 71.43 58.33 K intron_retention Actn,I_chrX_1929229_1936079,I_chrX_1929235_1930613,I_chrX_1929445_1930439,I_chrX_1929474_1930439,usp,I_chrX_1935420_1935493,I_chrX_1935678_1936079,I_chrX_1935889_1936079 chrX - chrX_1929235_1930439 chrX_1929234_1929235;chrX_1930439_1930440 chrX_1929135_1929234;chrX_1930440_1930472 14.29 NA NA 14.29 NA NA NA NA 25.00 9.52 NA NA NA NA NA NA NA NA NA 16.67 NA 27.59 13.33 15.00 NA NA NA NA 15.79 NA NA NA 18.75 NA NA 16.67 3.85 0.00 NA 33.33 NA 33.33 NA 9.52 13.33 NA NA 13.04 14.29 NA NA NA NA NA NA NA 7.14 NA K alternative_acceptor CG7546 chr3L + chr3L_7508878_7508970;chr3L_7508878_7508967 chr3L_7508878_7508925 chr3L_7508741_7508877;chr3L_7508971_7509150 11.11 10.00 11.11 13.95 7.69 11.11 10.00 12.50 8.75 13.33 8.00 10.91 11.54 15.38 11.11 10.34 11.11 7.14 21.05 15.15 13.79 17.07 10.09 11.69 11.36 9.52 10.14 10.87 13.95 14.00 9.09 12.12 20.45 11.63 14.63 9.26 10.20 11.90 9.76 10.94 12.90 15.25 5.88 7.58 15.00 10.71 15.49 11.11 11.67 11.59 12.64 11.90 10.53 11.11 15.38 11.11 9.72 23.33 K alternative_acceptor tral,I_chr3L_12512171_12512251 chr3L + chr3L_12511768_12511832 chr3L_12511768_12511829 chr3L_12511538_12511767;chr3L_12511833_12512170 6.59 5.43 7.04 8.68 6.45 8.11 5.88 5.37 5.54 6.56 6.59 7.37 5.75 6.02 8.51 5.15 9.68 7.07 6.80 6.76 7.41 6.29 5.13 6.45 5.32 7.77 6.19 9.52 7.23 6.12 8.14 8.72 7.57 4.72 8.54 9.22 6.74 6.09 6.75 5.73 5.11 6.32 7.77 7.11 4.26 5.18 4.60 8.46 8.50 4.23 5.19 5.60 7.57 5.24 8.40 6.32 7.24 7.54 K jcn_only_AD Gp150,I_chr2R_18205316_18205386,I_chr2R_18213233_18213308 chr2R + chr2R_18205274_18205386;chr2R_18205243_18205386;chr2R_18205282_18205386 chr2R_18205316_18205386 chr2R_18205387_18205459;chr2R_18205216_18205242 1.42 1.16 2.00 0.79 0.84 0.39 1.38 1.62 0.71 1.35 0.61 1.45 1.24 0.80 4.08 0.18 0.88 0.88 0.45 0.78 0.27 2.30 1.79 2.00 1.89 0.28 3.45 2.04 1.45 5.56 1.42 0.00 3.59 1.29 0.98 4.29 2.10 1.85 0.53 3.47 4.65 0.95 0.88 6.25 0.00 4.26 2.82 0.00 0.89 0.00 1.90 1.97 3.85 8.82 1.39 1.49 4.81 1.90 K alternative_donor CG3967,RI_chr3L_9408567_9410728,RI_chr3L_9412100_9412179 chr3L - chr3L_9412100_9412194 chr3L_9412100_9412179 chr3L_9412000_9412099;chr3L_9412195_9412279 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 3.85 0.00 NA 3.85 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 4.35 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.56 0.00 0.00 0.00 3.03 0.00 0.00 NA NA 4.55 0.00 0.00 0.00 2.08 K jcn_only_AA Doa,I_chr3R_24715823_24718923,I_chr3R_24747391_24747896 chr3R + chr3R_24746992_24747080 chr3R_24746992_24747062 chr3R_24746878_24746991;chr3R_24747081_24747146 6.67 5.83 6.53 5.07 6.43 7.41 2.55 5.74 8.13 6.47 9.29 5.79 6.67 4.81 5.95 7.37 8.93 6.52 9.27 4.03 8.00 6.97 4.18 7.55 6.67 12.27 5.22 9.17 8.90 5.76 6.67 7.94 12.79 5.57 4.43 7.25 10.82 1.40 6.51 7.12 8.04 6.74 5.80 5.94 7.89 9.21 4.18 5.43 7.26 8.78 4.44 2.23 6.80 4.13 6.25 7.81 9.90 10.34 N intron_retention msn,I_chr3L_2558033_2560115,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2558390_2563817 chr3L_2558389_2558390;chr3L_2563817_2563818 chr3L_2558293_2558389;chr3L_2563818_2563917 39.60 38.46 NA 45.00 53.85 NA 62.50 100.00 40.74 NA NA 61.11 NA NA 50.00 NA NA NA NA 100.00 NA 4.55 27.27 35.71 NA NA 25.00 NA NA 30.77 NA NA NA NA NA NA 11.11 NA 36.84 56.25 NA 100.00 NA NA 20.00 NA NA 25.00 100.00 NA 30.77 NA NA NA NA NA NA NA K jcn_only_AD tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563503_565293 chr3R_563503_565232 chr3R_563488_563502;chr3R_565294_565301 68.75 NA NA 58.97 NA NA 81.82 78.12 58.02 NA NA 76.00 66.67 NA 70.83 45.45 NA NA NA 75.00 NA NA NA NA NA 52.38 NA NA NA NA 78.12 NA NA 66.67 NA NA NA NA NA NA NA 71.43 NA NA NA NA NA NA 73.47 NA NA 59.09 NA NA 63.41 NA NA NA K multi_cassette lap,I_chr3R_3017854_3019314 chr3R + chr3R_3019411_3024049 chr3R_3019411_3021337;chr3R_3021618_3022015;chr3R_3022116_3024049 chr3R_3021338_3021617;chr3R_3022016_3022115 chr3R_3019315_3019410;chr3R_3024050_3024362 75.00 NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG17471,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1216223_1216285 chr4_1216222_1216223;chr4_1216285_1216286 chr4_1216163_1216222;chr4_1216286_1216354 3.33 0.00 3.51 7.94 0.00 0.00 2.22 2.65 3.96 NA 0.00 4.26 6.90 5.45 0.00 7.32 0.00 0.00 3.70 0.00 0.00 0.00 3.33 3.33 11.76 0.00 6.67 NA NA 0.00 5.33 10.53 7.14 3.70 0.00 10.53 NA NA 9.52 2.94 0.00 4.12 5.06 0.00 13.33 8.33 0.00 0.00 5.17 4.76 5.71 3.33 NA 3.45 0.00 0.00 0.00 0.00 K jcn_only_AA CG13384 chr2L + chr2L_8386386_8386474;chr2L_8386386_8386486 chr2L_8386386_8386483 chr2L_8386217_8386385;chr2L_8386487_8387378 37.46 36.62 40.36 38.12 39.41 38.55 39.36 38.60 35.92 33.47 37.45 37.40 38.95 37.93 38.02 35.23 36.94 39.74 37.67 33.77 40.11 37.17 33.65 36.36 36.17 41.60 37.35 37.46 39.68 39.98 41.22 37.31 38.42 38.13 36.57 36.70 35.36 36.43 33.73 38.90 41.19 37.13 35.63 37.38 36.73 39.55 39.92 36.72 37.70 33.33 35.31 37.12 40.78 38.24 38.63 38.61 37.02 41.06 K alternative_donor Atg6,I_chr3R_19876189_19876240 chr3R - chr3R_19876189_19876244 chr3R_19876189_19876240 chr3R_19876089_19876188;chr3R_19876245_19876340 0.00 6.67 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 5.26 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 5.56 0.00 0.00 K cassette CG42595,I_chr2RHet_3155517_3174709,RI_chr2RHet_3175044_3179353,RI_chr2RHet_3179300_3179586,I_chr2RHet_3179481_3179586 chr2RHet - chr2RHet_3179300_3179586;chr2RHet_3175044_3179586 chr2RHet_3179300_3179353,chr2RHet_3175044_3179353;chr2RHet_3179494_3179586 chr2RHet_3179354_3179493 chr2RHet_3174944_3175043;chr2RHet_3179587_3179598 90.91 84.62 86.96 87.50 85.71 90.91 97.73 91.30 93.33 100.00 72.73 72.73 91.30 89.47 73.33 86.36 85.71 75.00 96.30 94.12 69.23 100.00 100.00 88.89 100.00 70.00 88.89 NA 85.71 83.33 95.00 87.50 100.00 89.58 100.00 91.67 100.00 100.00 NA 100.00 100.00 88.24 95.00 95.00 100.00 100.00 100.00 75.00 90.91 NA 90.91 100.00 87.50 NA 75.00 85.71 90.00 84.00 K intron_retention CG15098,I_chr2R_14721883_14721980 chr2R - chr2R_14721624_14721815 chr2R_14721623_14721624;chr2R_14721815_14721816 chr2R_14721470_14721623;chr2R_14721816_14721882 0.32 0.26 0.24 0.43 0.14 0.00 0.54 0.36 0.25 0.30 0.13 0.14 0.00 0.42 0.41 0.71 0.00 0.25 0.00 0.29 0.00 0.84 0.23 0.38 0.88 0.00 0.47 1.62 0.42 0.69 0.44 0.22 0.72 0.42 0.21 0.38 0.13 0.31 0.26 0.51 0.78 0.32 0.32 0.21 0.40 0.66 0.42 0.57 0.15 0.23 0.50 0.37 0.00 0.00 0.42 0.14 0.00 0.45 K intron_retention glo,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7641488_7641562 chr3R_7641487_7641488;chr3R_7641562_7641563 chr3R_7641040_7641487;chr3R_7641563_7642266 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 K mutually_exclusive RI_chr2L_22125119_22126416,CycK,RI_chr2L_22126776_22130098,I_chr2L_22129256_22129319,I_chr2L_22129837_22129893 chr2L - chr2L_22125119_22128497,chr2L_22129899_22130098 chr2L_22125119_22126416,chr2L_22126776_22130098 chr2L_22128498_22129898 chr2L_22126417_22126775 chr2L_22125065_22125118;chr2L_22130099_22130142 1.75 1.46 3.05 1.97 4.55 1.49 1.99 17.95 8.82 1.20 1.15 1.94 4.82 5.49 3.37 7.14 6.56 3.81 4.64 7.56 1.02 0.75 1.92 1.23 1.32 1.75 1.93 0.68 0.78 1.54 4.82 1.05 1.15 5.59 2.56 1.14 0.72 1.14 1.62 1.38 0.69 10.71 6.45 3.47 0.46 1.01 1.82 0.60 3.49 1.23 1.56 1.85 0.80 0.99 5.93 1.42 2.34 1.24 K alternative_donor pgant6 chr3L + chr3L_2782497_2782737;chr3L_2782556_2782737 chr3L_2782414_2782737 chr3L_2782738_2783472;chr3L_2782330_2782413 70.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 70.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA deltaCOP,I_chrX_1754047_1754089,I_chrX_1755132_1755191,E_chrX_1755139_1755188,I_chrX_1757755_1757801 chrX - chrX_1754655_1754718 chrX_1754658_1754718 chrX_1754719_1755131;chrX_1754460_1754654 27.80 29.80 27.06 24.07 31.40 26.98 27.80 25.20 27.50 27.93 22.92 27.12 23.58 29.57 27.41 27.27 22.88 23.26 27.35 30.39 28.41 32.35 28.98 28.74 29.69 25.57 32.51 39.30 26.34 25.30 25.19 27.78 28.68 26.05 28.04 25.09 31.85 30.49 32.14 30.31 30.57 27.91 32.06 29.98 22.06 27.92 22.56 31.61 22.54 25.30 29.14 30.29 26.06 30.05 21.17 25.37 26.62 29.58 K intron_retention Not1,I_chr2R_5463624_5463682 chr2R - chr2R_5461206_5461291 chr2R_5461205_5461206;chr2R_5461291_5461292 chr2R_5460962_5461205;chr2R_5461292_5462451 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG8043,CG11755 chr3R + chr3R_4502770_4502817;chr3R_4502770_4502834;chr3R_4502770_4502810 chr3R_4502770_4502843 chr3R_4502645_4502769;chr3R_4502844_4503955 0.00 NA 4.55 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 6.67 0.00 0.00 NA 0.00 5.00 0.00 NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA 4.35 9.52 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 N jcn_only_AA I_chr3L_9481026_9484943,noncoding_11665 chr3L + chr3L_9481349_9481457;chr3L_9481349_9484943 chr3L_9481349_9481415 chr3L_9481282_9481348;chr3L_9484944_9485043 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RpS18,CG8908,EI_chr2R_16151918_16151997,I_chr2R_16151918_16152036,I_chr2R_16151938_16152065,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151942_16151997 chr2R_16151941_16151942;chr2R_16151997_16151998 chr2R_16151842_16151941;chr2R_16151998_16152066 91.31 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA 83.33 93.33 89.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG30492,C_chr2R_3522706_3523025,RI_chr2R_3536203_3536977,I_chr2R_3543397_3543455 chr2R + chr2R_3516618_3517681 chr2R_3516617_3516618;chr2R_3517681_3517682 chr2R_3516571_3516617;chr2R_3517682_3517750 7.69 NA 0.00 0.00 14.29 7.69 NA 8.33 0.00 NA NA 0.00 NA NA 11.11 10.53 13.33 0.00 0.00 13.04 NA NA 6.67 NA NA 15.38 NA NA 18.75 12.50 NA NA 14.29 7.41 NA NA 6.67 6.67 NA 8.33 NA 7.89 NA 5.26 NA 10.53 NA 6.06 8.33 NA NA NA NA NA 4.35 NA NA 0.00 K cassette CG7358,I_chrX_18784661_18784773 chrX - chrX_18784515_18784773 chrX_18784515_18784578;chrX_18784661_18784773 chrX_18784579_18784660 chrX_18784488_18784514;chrX_18784774_18784782 12.35 11.54 6.67 14.29 20.00 10.00 23.53 9.68 15.56 6.67 12.50 16.13 26.32 NA 11.54 13.04 13.33 9.09 22.22 16.33 15.38 16.67 7.58 16.67 15.00 10.53 3.12 7.41 21.05 11.11 47.83 16.67 17.65 6.25 17.65 5.26 4.48 10.42 9.30 12.90 14.29 12.20 10.00 24.00 4.35 18.52 12.50 9.52 9.30 6.82 23.33 9.68 10.53 6.25 13.04 8.82 6.45 13.33 K intron_retention Sh3beta,I_chr3L_7361085_7361784 chr3L - chr3L_7362231_7362326 chr3L_7362230_7362231;chr3L_7362326_7362327 chr3L_7361990_7362230;chr3L_7362327_7362333 81.82 81.82 75.86 75.66 64.91 84.48 82.88 70.86 69.04 79.41 69.84 81.43 72.13 69.57 81.11 75.95 66.67 68.75 72.81 74.82 58.21 79.61 88.42 87.62 92.86 89.47 92.16 89.39 93.62 83.93 65.42 80.00 83.33 80.00 90.00 93.55 72.73 88.64 82.86 85.14 87.72 74.70 73.49 84.00 82.61 91.14 90.41 80.95 78.07 79.69 91.76 88.10 85.48 92.31 80.53 84.52 83.87 83.53 K jcn_only_AA Fur2,RI_chrX_16267905_16268958,I_chrX_16270205_16270272,I_chrX_16274795_16274867 chrX + chrX_16274795_16274867 chrX_16274795_16274859 chrX_16274695_16274794;chrX_16274868_16274967 99.49 100.00 99.26 99.49 100.00 98.11 100.00 99.59 99.75 100.00 100.00 97.60 98.26 100.00 98.67 98.26 100.00 97.95 100.00 99.52 100.00 98.59 99.35 98.46 100.00 98.52 100.00 100.00 100.00 99.28 99.15 99.06 99.49 100.00 100.00 98.21 99.49 99.00 100.00 99.29 98.82 98.60 100.00 99.28 99.24 99.07 100.00 100.00 99.60 99.20 100.00 100.00 98.02 100.00 98.37 99.30 98.82 100.00 K alternative_donor MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17398749_17398908 chr2R_17398771_17398908 chr2R_17398909_17399008;chr2R_17398671_17398748 0.00 0.00 0.00 1.82 2.22 0.00 3.03 1.96 1.19 0.00 0.00 1.49 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.72 2.86 2.38 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 1.54 0.00 2.27 0.00 2.38 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG13602,I_chr3R_19753657_19753715 chr3R - chr3R_19753657_19753717;chr3R_19753657_19753869 chr3R_19753657_19753715 chr3R_19753602_19753656;chr3R_19753870_19754006 10.00 25.00 16.67 NA NA NA 0.00 0.00 11.11 NA NA 14.29 NA NA NA 0.00 NA NA NA 0.00 0.00 NA 16.67 25.00 NA NA NA NA NA 0.00 10.00 0.00 NA NA NA 25.00 NA 28.57 0.00 11.11 16.67 20.00 NA NA 33.33 0.00 10.00 0.00 25.00 NA 25.00 NA NA 0.00 0.00 0.00 0.00 33.33 K cassette PhKgamma,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11592631_11597322;chrX_11593440_11597322 chrX_11592631_11594653,chrX_11593440_11594653;chrX_11595161_11597322 chrX_11594654_11595160 chrX_11592533_11592630;chrX_11597323_11597422 84.38 92.31 88.24 75.61 70.97 84.00 97.06 78.05 83.33 87.10 91.30 96.08 33.33 85.19 76.67 91.67 75.00 83.33 78.26 84.15 100.00 66.15 84.38 87.93 84.62 81.82 81.13 66.67 79.55 81.36 83.87 96.97 93.44 83.33 76.92 95.24 94.05 88.24 88.46 83.56 89.47 80.00 86.96 86.27 90.00 78.43 85.42 81.82 86.54 81.48 78.69 86.21 92.31 81.63 85.19 84.09 91.67 92.86 K cassette eIF5B,I_chr3L_3429084_3443457,I_chr3L_3432366_3445364 chr3L - chr3L_3432366_3445364 chr3L_3432366_3443457;chr3L_3443566_3445364 chr3L_3443458_3443565 chr3L_3432266_3432365;chr3L_3445365_3445464 99.57 100.00 99.44 100.00 100.00 99.36 96.65 99.65 99.54 99.21 100.00 99.72 99.15 99.39 99.49 99.12 100.00 100.00 99.42 100.00 99.31 98.28 99.70 100.00 99.43 100.00 99.15 99.50 90.48 100.00 99.57 99.56 99.53 99.66 99.51 99.54 99.60 99.50 100.00 98.81 98.66 99.76 100.00 99.61 99.70 99.29 99.65 99.45 99.48 99.65 99.68 99.35 100.00 99.61 99.53 100.00 99.63 99.74 K intron_retention alph,I_chr3R_25417890_25422962 chr3R + chr3R_25417890_25418993 chr3R_25417889_25417890;chr3R_25418993_25418994 chr3R_25417790_25417889;chr3R_25418994_25419629 1.05 1.98 2.29 2.31 0.00 3.64 1.74 1.05 1.11 0.00 0.00 0.92 0.00 0.97 2.96 0.61 0.00 0.00 0.00 1.35 1.03 19.67 2.15 0.00 1.92 0.00 1.45 7.46 6.25 2.35 0.00 0.00 1.50 0.00 2.90 7.04 0.00 1.41 2.22 1.63 2.22 0.00 1.05 2.70 2.35 0.00 1.72 0.00 1.95 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.60 K alternative_donor Elp3 chr2L + chr2L_4444833_4444894 chr2L_4444837_4444894 chr2L_4444895_4444963;chr2L_4444769_4444832 29.03 30.77 26.09 10.00 26.32 40.00 26.32 34.88 28.99 20.00 29.03 35.42 33.33 44.00 29.03 58.54 39.13 29.63 53.33 22.22 33.33 16.67 12.82 5.88 25.00 22.22 31.82 NA 33.33 22.22 54.84 25.00 31.03 52.78 36.84 25.00 24.00 22.22 21.88 25.71 29.41 31.75 36.36 45.00 26.09 32.00 30.43 40.00 39.34 14.29 14.81 22.73 13.64 NA 37.04 33.33 8.11 10.87 K alternative_acceptor RpS3A,I_chr4_87364_87465,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87648_87717;chr4_87549_87717 chr4_87533_87717 chr4_87718_87817;chr4_87466_87532 0.03 0.03 0.03 0.02 0.04 0.00 0.00 NA 0.01 0.10 NA 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.05 0.00 0.06 0.05 0.06 0.06 0.20 0.08 0.25 0.02 0.06 NA 0.00 0.00 0.04 0.05 0.11 0.01 NA 0.00 0.17 0.07 0.04 0.08 0.00 0.12 0.03 0.00 0.05 0.04 0.00 0.00 0.00 0.00 K intron_retention CG8531,RI_chr2R_10144869_10144912 chr2R + chr2R_10145875_10145936 chr2R_10145874_10145875;chr2R_10145936_10145937 chr2R_10145451_10145874;chr2R_10145937_10146302 1.72 0.00 2.33 5.19 2.38 0.00 5.10 2.00 3.08 3.39 0.00 1.95 1.82 3.64 2.50 0.00 2.00 2.30 0.00 1.92 0.00 5.49 0.00 0.79 1.59 6.35 4.35 4.90 3.03 2.60 0.00 0.00 1.26 0.00 4.71 4.76 0.95 0.00 0.00 2.11 5.43 2.17 0.00 0.00 3.17 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 2.13 0.98 2.86 K cassette mld chr3R + chr3R_20446836_20448643 chr3R_20446836_20447997;chr3R_20448139_20448643 chr3R_20447998_20448138 chr3R_20446101_20446835;chr3R_20448644_20449325 0.00 2.56 0.00 2.56 5.88 3.23 3.57 2.22 3.08 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 7.41 2.38 3.57 0.00 0.00 0.00 2.22 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 2.33 0.00 0.00 2.17 6.56 1.96 0.00 0.00 0.00 0.00 2.70 2.50 0.00 0.00 K alternative_acceptor CG6860,RFI_chr2L_17371821_17372564 chr2L - chr2L_17368389_17372564 chr2L_17371821_17372564 chr2L_17372565_17372642;chr2L_17368289_17368388 13.43 11.76 15.96 16.67 10.00 8.08 21.18 16.80 16.36 11.36 13.92 15.58 15.07 18.39 15.05 32.17 12.68 13.25 16.13 13.47 16.22 6.03 16.42 11.72 12.50 7.06 13.39 13.16 13.58 13.22 14.63 9.09 10.95 18.94 13.73 13.33 9.58 12.00 10.06 12.30 10.39 13.64 16.25 18.02 5.96 13.43 16.67 14.29 17.42 10.68 13.51 18.06 12.16 11.11 15.79 10.83 11.39 9.93 K jcn_only_AA Cip4,I_chr3L_4325411_4326640,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4325384_4326983 chr3L_4325411_4326983 chr3L_4326984_4327170;chr3L_4325311_4325383 100.00 99.17 100.00 98.03 100.00 99.28 100.00 98.82 100.00 100.00 100.00 99.31 100.00 99.35 100.00 100.00 99.30 98.82 99.50 91.99 98.90 100.00 99.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.41 98.77 100.00 99.25 100.00 100.00 100.00 99.05 99.27 100.00 100.00 100.00 100.00 98.68 100.00 99.22 100.00 100.00 99.43 100.00 100.00 99.16 100.00 100.00 100.00 100.00 98.54 100.00 K alternative_acceptor mld,atl chr3R + chr3R_20451535_20457511 chr3R_20451535_20457504 chr3R_20451524_20451534;chr3R_20457512_20457813 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 91.67 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 92.86 100.00 100.00 94.12 100.00 91.67 93.33 100.00 100.00 92.31 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 NA 100.00 K alternative_acceptor Obp18a chrX - chrX_19029762_19029825 chrX_19029772_19029825 chrX_19029826_19029937;chrX_19029113_19029761 100.00 NA NA 92.31 NA NA NA 88.89 100.00 100.00 NA NA NA NA 100.00 100.00 NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA 100.00 NA NA 93.33 NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA K intron_retention Bet3 chr3L - chr3L_9432152_9432249 chr3L_9432151_9432152;chr3L_9432249_9432250 chr3L_9431582_9432151;chr3L_9432250_9432660 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 2.13 0.00 NA 2.27 0.00 NA 9.52 NA NA 5.56 5.26 2.94 NA 16.67 0.00 0.00 0.00 2.38 0.00 NA NA 4.76 0.00 0.00 NA 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 4.17 7.14 0.00 6.25 5.41 0.00 0.00 NA 0.00 4.65 0.00 0.00 2.04 7.69 K alternative_acceptor EDTP chr2R - chr2R_13322478_13331840 chr2R_13322481_13331840 chr2R_13331841_13332419;chr2R_13321630_13322477 100.00 NA NA NA NA NA 90.00 100.00 100.00 NA NA 91.67 NA NA 100.00 NA NA NA NA 100.00 NA NA 100.00 87.50 NA NA 100.00 NA NA NA NA NA NA 100.00 NA 90.00 100.00 NA 100.00 90.91 NA 100.00 NA 87.50 NA NA NA NA 90.00 NA NA NA NA NA 88.89 NA NA NA N alternative_donor Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11835112_11835624;chr2R_11835112_11835509 chr2R_11835112_11835668 chr2R_11834432_11835111;chr2R_11835669_11836215 9.71 12.22 13.70 10.64 10.77 8.93 3.08 5.41 6.29 8.96 12.00 11.86 17.39 12.50 8.33 13.11 6.00 8.47 7.14 11.28 10.20 11.05 11.11 11.38 4.29 1.61 14.55 10.87 6.25 12.63 6.15 10.84 12.40 8.24 14.46 8.97 14.71 9.52 9.56 9.49 4.26 11.03 7.32 6.82 12.40 12.88 8.13 8.65 5.66 17.39 8.66 11.39 11.54 9.71 5.80 12.70 6.02 6.35 K jcn_only_AA CG31211 chr3R + chr3R_7777961_7778368;chr3R_7777961_7778362 chr3R_7777961_7778390 chr3R_7777954_7777960;chr3R_7778391_7778487 0.00 0.00 0.00 0.00 NA 3.23 0.00 3.45 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.13 NA NA 2.78 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 NA 0.00 0.00 0.00 2.27 NA 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.45 2.17 3.57 2.38 K intron_retention kuz,F_chr2L_13635998_13637287,I_chr2L_13636762_13637287 chr2L + chr2L_13636844_13637287 chr2L_13636843_13636844;chr2L_13637287_13637288 chr2L_13636505_13636843;chr2L_13637288_13637387 28.87 27.27 20.00 10.38 NA 50.00 18.60 36.36 23.40 20.00 23.33 12.90 56.25 37.50 35.48 30.36 28.57 14.63 40.00 16.33 12.82 35.29 32.26 21.74 18.18 15.56 36.36 36.84 29.17 65.52 20.00 40.00 24.53 38.71 22.22 25.71 25.71 33.33 18.52 42.86 17.65 25.58 36.36 36.84 16.67 33.33 NA 37.04 30.56 30.77 42.86 28.57 NA NA 39.13 NA 26.09 40.00 K intron_retention RpL8,I_chr3L_2589746_2592161 chr3L + chr3L_2587891_2588083 chr3L_2587890_2587891;chr3L_2588083_2588084 chr3L_2587751_2587890;chr3L_2588084_2588997 0.00 0.00 0.04 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.04 0.11 0.02 0.02 0.00 0.02 0.06 0.16 0.03 0.02 0.03 0.00 0.00 0.00 0.01 0.00 0.04 0.00 0.00 0.02 0.04 0.00 0.00 0.00 0.00 0.02 0.00 0.03 0.08 0.05 0.00 0.02 0.04 0.01 0.00 0.00 0.04 0.03 K intron_retention pug chr3R + chr3R_6525545_6525606 chr3R_6525544_6525545;chr3R_6525606_6525607 chr3R_6525473_6525544;chr3R_6525607_6525817 0.00 NA NA 15.79 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 10.53 NA NA NA 0.00 NA NA NA 7.69 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2813977;chr2R_2814097_2814174;chr2R_2814327_2816013;chr2R_2816342_2816577;chr2R_2816779_2817327;chr2R_2817604_2817753 chr2R_2813978_2814096;chr2R_2814175_2814326;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817328_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Dyrk3,I_chr4_1233845_1234170 chr4 - chr4_1234147_1234223 chr4_1234146_1234147;chr4_1234223_1234224 chr4_1234032_1234146;chr4_1234224_1234270 61.80 NA NA 42.86 NA NA 62.50 77.78 61.11 NA NA 45.45 NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_last_exon pes chr2L - chr2L_7989552_7991357 chr2L_7991260_7991357 chr2L_7989243_7989551 chr2L_7990964_7991259 chr2L_7991358_7991551 0.00 0.42 0.00 0.00 0.00 0.00 0.32 0.28 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.43 0.00 0.71 0.00 0.36 0.00 0.00 0.33 0.44 0.55 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.46 0.50 0.00 0.00 0.53 0.31 0.49 0.00 0.00 0.36 0.00 0.37 0.00 K intron_retention zetaCOP chr3L - chr3L_16666525_16666581 chr3L_16666524_16666525;chr3L_16666581_16666582 chr3L_16666424_16666524;chr3L_16666582_16666650 0.00 0.00 0.00 0.76 0.88 0.00 0.71 1.14 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 1.17 0.00 0.00 12.00 0.00 4.88 1.60 10.26 0.00 9.32 2.50 0.00 0.00 0.73 0.97 0.00 6.12 0.00 0.00 2.04 0.00 2.50 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.58 0.00 6.25 0.00 1.37 NA 0.44 0.00 0.00 0.65 K intron_retention Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629684_2629913 chr3L_2629683_2629684;chr3L_2629913_2629914 chr3L_2629141_2629683;chr3L_2629914_2629921 100.00 NA 90.00 97.44 NA 100.00 100.00 100.00 96.43 NA NA 100.00 92.59 100.00 100.00 98.65 NA NA 96.30 97.50 NA NA 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA 93.33 NA NA NA 100.00 92.31 100.00 92.31 NA NA 100.00 NA 100.00 97.83 NA 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 K intron_retention vap,RI_chrX_15899237_15899352,I_chrX_15899237_15899654 chrX - chrX_15894852_15894916 chrX_15894851_15894852;chrX_15894916_15894917 chrX_15894701_15894851;chrX_15894917_15895823 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 7.32 6.82 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.65 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 N alternative_acceptor Moca-cyp chr3R + chr3R_24167182_24167348;chr3R_24167182_24167249;chr3R_24167182_24167243;chr3R_24167182_24167260 chr3R_24167182_24167906 chr3R_24167094_24167181;chr3R_24167907_24167936 27.42 26.19 26.47 15.38 26.09 40.54 12.82 19.67 23.61 34.62 29.41 27.42 21.43 24.14 28.95 35.09 24.14 29.17 25.00 32.63 27.27 54.90 26.76 26.92 25.81 20.00 24.14 25.00 28.26 40.74 5.38 62.50 77.69 26.98 36.17 34.04 27.69 32.56 27.42 26.14 35.29 19.44 30.00 19.35 44.23 36.21 36.96 50.00 24.64 29.27 23.81 22.86 30.30 27.27 25.64 29.79 34.09 52.70 K jcn_only_AA cwo,noncoding_15870 chr3R + chr3R_6222543_6223088 chr3R_6222543_6223084 chr3R_6222454_6222542;chr3R_6223089_6223406 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 NA 100.00 100.00 100.00 95.24 100.00 100.00 100.00 98.77 100.00 100.00 100.00 95.45 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 96.61 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K intron_retention CG13893,I_chr3L_600913_601954 chr3L - chr3L_600913_603370 chr3L_600912_600913;chr3L_603370_603371 chr3L_600843_600912;chr3L_603371_604001 0.00 0.00 0.00 0.00 0.00 4.44 0.00 3.64 1.72 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 3.12 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.11 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 2.38 1.39 0.00 0.00 2.13 0.00 2.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor vir-1,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,I_chr2L_12421830_12423260 chr2L - chr2L_12421902_12423322;chr2L_12421830_12423322 chr2L_12421862_12423322 chr2L_12423323_12423328;chr2L_12421816_12421829 1.55 1.54 2.61 3.29 4.08 2.26 2.76 4.15 2.22 0.00 3.23 1.08 2.11 1.54 4.42 2.43 3.15 2.70 3.58 1.55 5.14 0.59 1.19 0.71 0.41 3.59 1.44 2.75 1.06 1.17 1.12 1.73 4.11 3.30 1.08 1.61 0.63 1.02 1.46 3.00 2.22 3.50 3.40 0.96 2.19 0.69 0.41 1.10 2.05 0.68 0.00 0.61 0.88 0.72 2.41 0.59 0.59 1.35 K intron_retention Su(var)3-9,I_chr3R_11088444_11088825 chr3R - chr3R_11087620_11088268 chr3R_11087619_11087620;chr3R_11088268_11088269 chr3R_11085623_11087619;chr3R_11088269_11088443 25.00 NA NA 43.75 NA NA NA NA NA NA NA 23.53 NA NA NA 33.33 NA NA NA 41.18 NA NA 14.29 NA NA NA 46.15 20.00 NA NA NA NA 0.00 NA NA 36.36 15.38 NA NA NA NA 54.55 NA NA NA NA NA NA NA NA 7.14 NA NA NA 25.00 NA NA NA K alternative_donor Adf1,CG15908_CG9410 chr2R + chr2R_2549942_2550073 chr2R_2549954_2550073 chr2R_2550074_2550262;chr2R_2549797_2549941 60.30 53.85 60.61 68.57 50.00 70.83 62.50 64.58 58.70 54.55 71.43 54.00 53.85 56.52 62.16 69.44 55.00 52.00 60.00 57.14 63.16 71.43 58.62 61.54 66.67 66.67 70.83 NA 73.33 50.00 66.67 41.18 50.00 58.00 57.14 70.59 54.17 56.00 61.54 57.14 69.23 59.62 60.00 59.09 73.33 75.00 61.90 47.06 59.02 55.56 60.71 71.43 62.50 52.94 67.74 62.96 54.55 77.27 K cassette 14-3-3zeta,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5993331_5994971 chr2R_5993331_5994138;chr2R_5994303_5994971 chr2R_5994139_5994302 chr2R_5993231_5993330;chr2R_5994972_5995071 18.75 NA NA 18.75 NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA 2.44 NA NA NA NA NA NA NA NA NA NA NA 42.86 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor cdi chr3R - chr3R_14875792_14875867 chr3R_14875795_14875867 chr3R_14875868_14875953;chr3R_14875539_14875791 50.00 43.75 60.00 52.00 66.67 50.00 47.37 46.15 47.22 50.00 NA 59.09 50.00 NA 50.00 62.50 38.46 NA 46.15 64.00 63.64 59.09 62.86 47.37 50.00 45.45 51.85 43.75 50.00 55.00 53.85 NA 40.00 60.00 41.18 60.00 52.17 33.33 44.12 39.13 NA 39.29 63.64 52.63 NA 36.36 33.33 NA 60.00 NA 56.25 42.11 NA NA 62.50 41.67 36.36 NA K intron_retention Klp61F chr3L - chr3L_1241992_1242075 chr3L_1241991_1241992;chr3L_1242075_1242076 chr3L_1241568_1241991;chr3L_1242076_1242327 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 K jcn_only_AA CG8552,I_chr2L_8140779_8156516 chr2L - chr2L_8135615_8135673 chr2L_8135618_8135673 chr2L_8135674_8136092;chr2L_8134842_8135614 95.45 98.41 97.44 95.69 97.73 93.10 95.45 98.43 95.71 86.21 93.22 93.26 94.00 96.97 93.55 93.07 96.43 100.00 95.56 97.06 92.98 94.05 100.00 95.59 92.59 95.83 93.42 100.00 100.00 96.39 98.73 95.65 100.00 96.15 92.06 93.94 100.00 95.45 90.38 96.38 92.79 95.17 95.16 95.00 95.45 93.39 93.15 95.42 96.30 94.12 96.30 100.00 94.37 94.12 97.26 88.14 95.18 93.90 K intron_retention ct chrX + chrX_7557588_7564923 chrX_7557587_7557588;chrX_7564923_7564924 chrX_7556679_7557587;chrX_7564924_7565341 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor RPA2,RI_chr2L_20925851_20925909 chr2L - chr2L_20925824_20925913 chr2L_20925851_20925913 chr2L_20925914_20925975;chr2L_20925751_20925823 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 76.69 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG11148,I_chr4_886499_886547,RI_chr4_886921_887162 chr4 - chr4_886499_886556 chr4_886498_886499;chr4_886556_886557 chr4_886399_886498;chr4_886557_886647 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.51 0.00 0.00 1.92 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Fer1HCH,I_chr3R_26212319_26213496,I_chr3R_26213132_26213185 chr3R - chr3R_26213273_26213496;chr3R_26213325_26213496 chr3R_26213365_26213496 chr3R_26213497_26213534;chr3R_26213186_26213272 0.98 1.02 0.59 1.17 0.52 1.07 1.78 1.73 0.46 1.39 0.92 1.54 0.98 0.94 1.17 1.20 0.48 1.49 1.44 0.82 0.49 0.97 1.38 1.01 2.26 1.32 0.75 0.68 0.34 0.77 1.75 0.35 1.08 1.63 1.86 0.71 0.94 0.84 1.42 0.98 1.50 0.88 0.95 1.00 1.39 0.99 0.52 2.22 1.83 0.93 0.56 0.99 0.64 0.44 0.98 0.17 0.48 1.19 K intron_retention TER94 chr2R + chr2R_5876809_5877975 chr2R_5876808_5876809;chr2R_5877975_5877976 chr2R_5876652_5876808;chr2R_5877976_5878078 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.29 0.93 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon BEAF-32,I_chr2R_10658570_10659304,noncoding_6875 chr2R + chr2R_10658570_10659304 chr2R_10658570_10658826 chr2R_10659305_10660149 chr2R_10658827_10659147 chr2R_10658497_10658569 92.86 94.12 96.43 93.33 91.67 92.86 80.00 94.44 86.67 71.43 93.33 94.44 87.50 90.48 92.31 80.00 90.91 93.75 93.75 96.00 92.86 84.62 92.31 94.44 94.74 95.24 92.00 80.00 94.44 92.31 75.00 95.00 90.00 90.48 94.74 90.91 96.67 96.67 96.30 96.88 88.89 90.00 96.00 87.50 94.12 96.88 88.89 88.89 97.22 91.67 91.67 93.75 96.00 95.24 90.91 78.57 83.33 97.50 K alternative_acceptor sra,RI_chr3R_12013022_12018544 chr3R + chr3R_12013022_12021756 chr3R_12013022_12021752 chr3R_12012922_12013021;chr3R_12021757_12023310 97.67 95.65 97.73 95.00 97.50 100.00 98.11 95.08 97.75 100.00 98.04 98.36 97.30 97.06 88.57 97.30 97.30 94.44 97.44 96.74 100.00 98.77 98.44 96.36 100.00 100.00 97.67 98.36 98.36 98.51 100.00 97.37 99.02 94.87 97.50 100.00 96.91 95.00 98.41 98.72 98.39 95.18 96.15 100.00 98.59 96.72 97.50 97.01 93.94 98.00 96.08 97.73 96.15 91.67 97.14 98.11 98.15 98.18 K alternative_acceptor foi,I_chr3L_8520658_8520733,I_chr3L_8524905_8524976 chr3L + chr3L_8520658_8523659 chr3L_8520658_8520733 chr3L_8520558_8520657;chr3L_8523660_8524249 100.00 100.00 100.00 50.00 100.00 100.00 100.00 75.00 80.00 50.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 50.00 100.00 75.00 100.00 75.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG5871,NELF-A chr3R + chr3R_17046990_17047047 chr3R_17046989_17046990;chr3R_17047047_17047048 chr3R_17046895_17046989;chr3R_17047048_17047472 0.00 0.00 0.00 5.77 10.00 4.76 2.86 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.00 18.92 0.00 0.00 0.00 0.00 0.00 8.33 4.00 0.00 0.00 0.00 12.50 7.69 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 3.23 0.00 3.85 0.00 3.33 0.00 2.33 0.00 0.00 0.00 0.00 2.38 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11009 chr3L + chr3L_12843432_12843597 chr3L_12843431_12843432;chr3L_12843597_12843598 chr3L_12843289_12843431;chr3L_12843598_12843897 0.00 0.00 0.00 0.49 0.00 0.00 0.47 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG31999,I_chr4_238453_238873,I_chr4_238809_238873,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_238121_238873;chr4_238453_238873 chr4_238809_238873 chr4_238874_238973;chr4_238032_238120 1.73 5.00 1.45 4.59 0.00 1.85 2.27 1.45 1.04 0.00 3.70 1.08 6.67 1.04 2.47 0.72 0.00 0.00 1.63 3.42 0.00 2.13 0.00 3.70 4.17 0.00 5.13 NA 6.25 0.00 0.58 5.26 3.85 1.16 2.94 0.00 5.26 4.00 0.00 2.70 0.00 1.63 0.00 4.44 0.00 0.00 1.43 0.00 1.83 3.51 11.43 3.03 0.00 1.82 1.44 6.90 2.20 1.96 K cassette sli,RI_chr2R_11794739_11809143 chr2R - chr2R_11772994_11773603 chr2R_11772994_11773089;chr2R_11773162_11773603 chr2R_11773090_11773161 chr2R_11772856_11772993;chr2R_11773604_11773675 91.30 96.55 82.93 91.67 87.50 78.79 65.45 98.63 88.04 87.50 91.30 95.08 100.00 85.11 83.67 93.55 94.74 86.21 92.86 93.42 96.15 96.67 91.67 88.57 92.31 83.78 89.19 93.33 80.00 82.14 88.57 100.00 93.75 89.86 96.30 88.89 80.77 96.00 97.22 91.49 90.00 91.36 89.19 86.96 90.00 92.86 93.75 93.75 90.67 94.12 87.23 80.56 93.33 81.82 90.70 100.00 91.67 88.00 K alternative_acceptor Mnn1 chr2L + chr2L_7057157_7057347 chr2L_7057157_7057223 chr2L_7056561_7057156;chr2L_7057348_7057674 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K alternative_donor lok,RI_chr2L_20063248_20063377 chr2L + chr2L_20062013_20062147 chr2L_20062064_20062147 chr2L_20062148_20062305;chr2L_20061782_20062012 38.89 40.00 30.56 53.12 33.33 31.03 45.83 27.54 42.37 36.36 41.18 48.00 57.14 43.33 48.48 32.14 47.37 40.74 45.45 34.67 34.48 38.24 24.32 45.95 32.00 51.61 40.62 50.00 25.00 25.00 25.00 33.33 31.58 31.15 38.89 19.61 47.83 37.04 40.62 19.61 46.94 36.23 53.57 47.37 44.00 40.74 38.71 39.02 36.00 25.00 34.78 52.00 20.00 26.09 42.22 42.86 44.44 28.57 N jcn_only_AA EF_chr2R_8548702_8595112,nemy chr2R - chr2R_8561434_8563629;chr2R_8563548_8563629;chr2R_8561431_8563629 chr2R_8560845_8563629 chr2R_8563630_8563736 100.00 99.07 98.36 100.00 100.00 100.00 100.00 99.29 99.50 98.33 100.00 99.40 100.00 100.00 100.00 100.00 100.00 99.01 100.00 93.41 100.00 98.96 98.92 99.21 100.00 100.00 98.45 100.00 97.22 100.00 89.39 100.00 100.00 98.53 100.00 100.00 100.00 97.76 99.39 100.00 100.00 100.00 100.00 100.00 100.00 98.06 98.53 100.00 98.31 100.00 99.52 98.92 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG17883,I_chr2R_560547_560618 chr2R + chr2R_560729_560784 chr2R_560729_560781 chr2R_560619_560728;chr2R_560785_561111 100.00 NA 100.00 NA NA NA 95.38 98.04 98.18 NA 95.00 100.00 97.50 100.00 NA 97.78 96.30 NA 94.44 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 96.30 NA NA 100.00 NA NA 98.36 NA NA NA NA NA 100.00 NA 100.00 100.00 K intron_retention CG17734,I_chr3R_7068286_7069503 chr3R - chr3R_7068286_7068545 chr3R_7068285_7068286;chr3R_7068545_7068546 chr3R_7068186_7068285;chr3R_7068546_7068735 4.05 4.00 2.94 11.81 4.82 5.43 17.21 3.16 4.02 2.04 3.23 3.17 5.56 2.50 1.77 4.23 3.30 4.60 6.00 4.39 2.63 5.88 6.38 3.03 7.89 4.76 8.70 10.98 8.08 3.92 2.56 0.83 1.96 3.64 5.49 12.99 2.82 1.54 3.36 5.11 6.13 3.86 4.05 0.76 4.26 4.37 4.27 1.83 3.72 3.05 6.87 0.00 5.26 5.51 4.32 1.71 4.49 1.76 N jcn_only_AD Not1,I_chr2R_5463624_5463682 chr2R - chr2R_5455592_5456522;chr2R_5455592_5456067 chr2R_5455592_5455673 chr2R_5455002_5455591;chr2R_5456523_5457661 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.49 0.00 0.00 0.00 0.00 0.00 0.00 3.29 3.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor I_chr3L_3151185_3151263,CG32280 chr3L + chr3L_3165255_3167941;chr3L_3165352_3167941;chr3L_3165390_3167941;chr3L_3165704_3167941;chr3L_3165407_3167941 chr3L_3165222_3167941 chr3L_3167942_3168265;chr3L_3165212_3165221 33.33 NA NA 25.00 NA NA 33.33 NA 25.00 75.00 NA 33.33 NA NA NA 25.00 NA 0.00 NA NA NA 66.67 57.14 NA NA NA NA NA 25.00 NA NA NA 50.00 NA NA NA 57.14 NA NA 33.33 NA NA NA NA 33.33 0.00 33.33 50.00 0.00 42.86 50.00 NA NA NA NA NA 57.14 0.00 K intron_retention Pax,RI_chr2L_19401373_19401448,I_chr2L_19401373_19401523,RI_chr2L_19401373_19409403,snmRNA:359,I_chr2L_19404678_19404749,RI_chr2L_19404683_19426205,RI_chr2L_19404823_19409403 chr2L - chr2L_19401373_19403998 chr2L_19401372_19401373;chr2L_19403998_19403999 chr2L_19401273_19401372;chr2L_19403999_19404682 8.98 8.65 11.38 3.30 13.83 10.34 12.10 8.92 13.23 8.86 26.83 11.01 24.24 17.53 10.09 15.45 14.29 12.20 18.18 5.45 10.53 13.70 7.41 6.63 4.79 5.41 8.98 11.32 4.23 8.39 13.39 3.45 12.31 13.37 8.09 8.43 9.60 6.47 6.49 8.71 2.08 10.78 17.05 9.16 3.57 4.31 2.80 10.27 12.17 3.95 7.54 11.54 3.21 3.54 15.08 4.02 3.68 3.30 K jcn_only_AD CG17002 chr2R + chr2R_2874439_2875142 chr2R_2874454_2875142 chr2R_2875143_2875164;chr2R_2874339_2874438 3.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.63 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention ergic53 chr3L + chr3L_8528287_8528473 chr3L_8528286_8528287;chr3L_8528473_8528474 chr3L_8527971_8528286;chr3L_8528474_8529192 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 1.31 0.00 0.64 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.17 0.00 0.00 0.81 1.01 0.00 0.23 0.54 0.00 0.00 0.00 0.00 0.00 0.81 0.00 1.03 0.49 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA shep,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5155644_5156066;chr3L_5155711_5156066 chr3L_5155732_5156066 chr3L_5156067_5156229;chr3L_5155556_5155643 5.06 4.35 4.96 13.24 6.06 5.68 5.82 4.90 6.25 5.33 3.77 4.75 8.92 4.98 4.17 5.06 6.50 5.50 6.46 5.42 4.57 4.30 6.96 7.78 7.39 8.19 2.69 2.13 6.36 6.43 4.51 5.62 4.21 7.80 5.11 8.22 5.70 4.00 3.35 3.49 8.07 4.59 3.43 2.33 4.92 3.96 4.00 4.92 5.25 7.08 6.61 4.65 4.44 1.85 4.76 5.59 8.00 3.47 K intron_retention cbs,I_chr2R_9340512_9340593 chr2R + chr2R_9338504_9338594 chr2R_9338503_9338504;chr2R_9338594_9338595 chr2R_9338008_9338503;chr2R_9338595_9339380 0.00 0.00 0.00 4.55 0.00 0.00 5.66 6.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 2.68 0.00 8.20 0.00 1.64 0.00 0.00 0.00 0.00 2.20 0.00 0.00 0.00 0.00 0.00 2.38 0.00 1.67 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 2.44 2.00 2.74 0.00 1.59 0.00 0.00 0.00 1.72 0.00 0.00 0.00 K intron_retention CG14478 chr2R + chr2R_13349991_13350055 chr2R_13349990_13349991;chr2R_13350055_13350056 chr2R_13349499_13349990;chr2R_13350056_13352421 95.24 93.33 100.00 96.55 92.86 100.00 93.10 97.30 94.34 93.75 85.71 92.86 95.65 88.89 100.00 96.77 100.00 87.50 94.12 94.29 100.00 85.19 97.06 95.83 95.00 100.00 100.00 100.00 100.00 86.67 100.00 90.91 100.00 100.00 95.24 93.75 96.15 93.33 96.30 96.97 95.24 97.87 85.00 95.65 93.75 95.65 93.75 97.44 97.14 86.21 87.10 94.44 87.50 NA 94.44 100.00 83.33 85.71 K intron_retention Ptp10D,CEF_chrX_11516219_11517862,I_chrX_11516225_11516345 chrX + chrX_11567495_11567763 chrX_11567494_11567495;chrX_11567763_11567764 chrX_11567366_11567494;chrX_11567764_11567993 6.58 3.03 2.94 6.12 0.00 6.67 20.83 16.67 8.70 16.00 0.00 10.00 7.69 12.50 13.16 3.70 3.57 12.90 5.00 8.00 8.33 12.31 6.12 3.23 13.64 6.67 0.00 NA 0.00 5.00 8.89 17.65 6.49 4.44 6.67 0.00 5.08 0.00 5.63 8.89 0.00 8.47 0.00 8.33 5.26 10.53 5.88 11.63 7.14 8.33 9.09 14.29 8.00 0.00 6.06 0.00 0.00 0.00 K intron_retention CG17273,I_chr3R_16652066_16655997,REI_chr3R_16652421_16653701 chr3R - chr3R_16651716_16651785 chr3R_16651715_16651716;chr3R_16651785_16651786 chr3R_16651355_16651715;chr3R_16651786_16652065 2.91 1.10 2.73 5.83 2.05 2.41 4.72 1.69 3.00 2.03 2.50 2.65 2.03 2.08 2.09 1.83 2.33 3.94 3.05 2.75 1.47 4.90 3.26 2.65 5.86 3.62 3.26 3.63 4.74 2.33 6.67 3.29 4.85 2.48 3.64 3.44 3.74 3.60 2.97 2.91 8.74 2.44 1.74 2.91 3.04 3.13 2.29 3.27 2.24 2.81 3.39 3.60 1.02 1.09 3.02 1.82 0.85 3.06 K intron_retention CG1681 chrX + chrX_13302825_13302895 chrX_13302824_13302825;chrX_13302895_13302896 chrX_13302689_13302824;chrX_13302896_13303422 1.14 0.39 0.54 0.00 1.89 1.30 1.05 1.21 1.24 0.82 0.00 0.85 1.75 2.86 1.23 2.58 0.00 0.00 1.57 0.30 0.00 3.78 0.91 0.67 0.50 1.41 2.73 3.55 16.60 0.00 0.68 0.00 3.09 0.54 0.00 0.00 1.42 0.77 0.54 1.57 4.38 1.88 0.99 1.29 2.13 1.98 1.62 1.83 1.14 1.39 1.07 0.00 0.59 0.00 1.35 1.10 2.13 2.16 K jcn_only_AA e(y)3,I_chrX_19530503_19530884,I_chrX_19530503_19531405 chrX - chrX_19530473_19531650 chrX_19530503_19531650 chrX_19531651_19532371;chrX_19530403_19530472 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.87 100.00 98.51 100.00 100.00 100.00 100.00 100.00 96.77 94.87 100.00 96.77 97.83 100.00 95.83 100.00 100.00 100.00 NA 100.00 100.00 97.50 NA 100.00 100.00 97.06 97.37 98.73 92.31 100.00 98.04 NA 95.77 100.00 97.06 NA 100.00 NA 97.50 98.53 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 K intron_retention Act42A,dream chr2R - chr2R_1902928_1903081 chr2R_1902927_1902928;chr2R_1903081_1903082 chr2R_1901407_1902927;chr2R_1903082_1903223 0.28 0.35 0.18 0.21 0.30 0.32 0.22 0.18 0.23 0.00 0.00 0.41 0.58 0.28 0.28 0.14 0.13 0.29 0.21 0.16 0.16 0.19 0.41 0.22 0.46 0.32 3.06 1.84 0.35 0.21 0.07 0.22 0.16 0.08 0.49 0.86 0.19 0.36 0.92 0.27 0.46 0.25 0.29 0.29 0.29 0.37 0.95 0.25 0.19 1.09 1.15 0.00 1.41 1.92 0.24 1.06 0.69 0.08 K intron_retention CtBP chr3R + chr3R_8837575_8845063 chr3R_8837574_8837575;chr3R_8845063_8845064 chr3R_8837487_8837574;chr3R_8845064_8845536 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 K alternative_last_exon CG6928 chr3L + chr3L_12000501_12000715 chr3L_12000501_12000593 chr3L_12000716_12001162 chr3L_12000594_12000662 chr3L_12000321_12000500 0.00 0.00 0.00 9.09 0.00 0.00 4.76 8.33 0.00 0.00 0.00 5.56 0.00 0.00 0.00 5.00 12.50 0.00 9.09 0.00 0.00 7.69 0.00 0.00 0.00 11.11 0.00 13.33 23.08 0.00 10.00 12.50 0.00 0.00 10.00 0.00 0.00 14.29 0.00 6.25 0.00 15.79 14.29 0.00 20.00 0.00 10.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 K intron_retention CG12702,I_chrX_19654440_19654520 chrX - chrX_19653698_19653764 chrX_19653697_19653698;chrX_19653764_19653765 chrX_19653197_19653697;chrX_19653765_19653999 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 4.76 11.11 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 K jcn_only_AD lid,I_chr2L_5996532_5997682,I_chr2L_5996532_5998072,I_chr2L_5996532_5999224 chr2L - chr2L_5996532_5999409 chr2L_5996532_5999297 chr2L_5996432_5996531;chr2L_5999410_5999478 96.72 100.00 100.00 98.18 95.24 96.15 98.31 92.54 92.86 96.77 100.00 96.15 96.77 98.18 98.08 93.06 92.31 93.33 98.15 98.44 96.55 88.57 92.16 96.43 100.00 96.30 98.15 100.00 NA 96.67 94.23 NA 91.18 100.00 92.31 97.37 95.12 97.50 100.00 100.00 NA 100.00 97.44 96.67 NA NA NA 100.00 100.00 NA 89.58 86.96 NA NA 96.23 95.00 NA NA K alternative_donor CG8323,CG18327 chr2R + chr2R_10053147_10053647 chr2R_10053230_10053647 chr2R_10053648_10054496;chr2R_10053094_10053146 96.30 92.86 100.00 83.33 88.89 100.00 94.44 92.86 94.74 100.00 100.00 96.00 100.00 90.00 100.00 93.75 100.00 100.00 90.91 93.55 100.00 100.00 94.12 100.00 100.00 100.00 93.75 91.67 100.00 100.00 93.33 95.24 92.59 95.24 100.00 100.00 95.45 92.86 89.47 97.06 100.00 96.30 100.00 100.00 96.55 91.89 100.00 96.30 95.45 100.00 100.00 93.75 94.12 100.00 92.86 94.12 100.00 97.06 K intron_retention CG1792,pasha chr3R + chr3R_27442995_27443070 chr3R_27442994_27442995;chr3R_27443070_27443071 chr3R_27442297_27442994;chr3R_27443071_27443181 14.81 21.05 13.64 16.13 20.00 NA 11.76 16.13 14.81 NA NA 20.00 NA NA 5.56 19.05 21.43 14.29 14.29 20.00 NA 21.05 10.53 19.05 NA 20.00 14.29 33.33 NA 0.00 17.65 6.67 0.00 12.50 NA 20.00 12.90 20.00 4.88 15.15 NA 13.33 NA NA 12.50 14.29 4.35 31.25 15.15 15.00 13.33 NA NA 4.00 17.65 19.05 11.54 12.50 K alternative_donor Csk,I_chr3R_7463337_7463512,I_chr3R_7468917_7472437,I_chr3R_7468917_7472509,I_chr3R_7468928_7472509 chr3R - chr3R_7468928_7472509 chr3R_7468928_7472437 chr3R_7468892_7468927;chr3R_7472510_7472537 63.16 66.67 NA 66.67 NA 54.55 75.00 72.73 54.29 NA 44.44 55.00 62.50 55.56 71.43 63.16 NA NA 75.00 60.00 NA NA 64.29 87.50 60.00 62.50 72.22 NA NA NA 75.00 NA 62.50 58.33 36.36 66.67 36.36 NA NA 50.00 NA 63.16 87.50 NA NA NA NA 66.67 71.43 NA 41.67 63.64 NA NA 69.23 NA NA NA K intron_retention E_chr3L_17612784_17614501,CG6259 chr3L - chr3L_17613995_17614200 chr3L_17613994_17613995;chr3L_17614200_17614201 chr3L_17613829_17613994;chr3L_17614201_17614352 0.65 0.00 0.00 1.05 0.00 0.00 0.65 1.24 1.41 1.56 0.00 1.37 0.00 0.95 0.72 2.14 0.00 0.00 0.00 1.12 0.87 3.33 0.00 1.31 0.00 1.61 1.52 0.91 0.00 1.22 0.00 0.00 0.00 0.00 2.94 0.00 0.65 0.00 0.70 2.61 0.00 1.00 0.00 1.72 1.45 0.00 0.00 1.08 1.84 0.00 2.05 1.27 1.10 0.00 0.00 0.00 0.00 0.00 K intron_retention lap,I_chr3R_3017854_3019314 chr3R + chr3R_3016519_3016853 chr3R_3016518_3016519;chr3R_3016853_3016854 chr3R_3016443_3016518;chr3R_3016854_3016886 0.00 0.00 0.00 0.00 5.00 0.00 8.33 5.00 12.24 NA 6.67 9.30 NA 0.00 0.00 7.69 4.35 0.00 0.00 8.00 0.00 NA 0.00 0.00 NA 5.56 7.14 NA NA NA 10.00 NA NA 4.65 NA NA 0.00 NA 0.00 0.00 NA 5.26 0.00 0.00 NA 0.00 0.00 NA 7.32 0.00 0.00 0.00 NA NA 0.00 NA NA NA K alternative_donor dj-1beta,I_chr3R_26643930_26646602 chr3R + chr3R_26633376_26633455 chr3R_26633390_26633455 chr3R_26633456_26633524;chr3R_26633310_26633375 100.00 100.00 100.00 99.23 100.00 100.00 100.00 99.15 99.44 100.00 100.00 99.42 100.00 100.00 100.00 98.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.34 100.00 100.00 99.19 100.00 100.00 100.00 100.00 98.96 100.00 100.00 100.00 99.28 99.35 100.00 100.00 99.57 100.00 99.47 98.72 100.00 100.00 99.56 99.49 100.00 100.00 99.29 100.00 100.00 99.53 100.00 99.12 100.00 98.99 100.00 K intron_retention CG7971,I_chr3L_1659363_1659845,I_chr3L_1667736_1667806 chr3L - chr3L_1655021_1656921 chr3L_1655020_1655021;chr3L_1656921_1656922 chr3L_1654879_1655020;chr3L_1656922_1658464 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette Zasp52,I_chr2R_11661472_11663280,F_chr2R_11662587_11662811,I_chr2R_11690993_11701987 chr2R - chr2R_11661472_11664682 chr2R_11661472_11661932;chr2R_11663013_11664682 chr2R_11661933_11663012 chr2R_11661372_11661471;chr2R_11664683_11664791 99.47 100.00 100.00 100.00 100.00 100.00 99.32 99.32 100.00 98.86 100.00 100.00 98.28 98.77 100.00 98.95 98.78 100.00 98.81 99.65 100.00 91.95 99.59 99.47 99.26 100.00 99.39 100.00 99.32 100.00 99.10 99.03 100.00 100.00 99.19 100.00 99.68 98.68 100.00 99.61 98.95 99.15 100.00 99.47 99.36 99.37 99.36 99.42 100.00 99.21 99.48 100.00 98.98 98.17 99.06 100.00 99.36 100.00 K jcn_only_AD Imp,I_chrX_10699490_10700695,RI_chrX_10699665_10700501,RI_chrX_10699665_10700695 chrX - chrX_10699503_10700501;chrX_10699503_10700695 chrX_10699503_10700474 chrX_10699299_10699502;chrX_10700696_10700795 8.93 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.52 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG1317 chr3L - chr3L_2368426_2368629 chr3L_2368426_2368620 chr3L_2368013_2368425;chr3L_2368630_2370048 2.42 0.00 2.70 3.03 0.00 3.12 0.00 4.41 0.00 2.38 2.27 7.32 2.86 0.00 3.92 2.50 6.45 0.00 3.77 3.85 0.00 9.84 4.26 1.67 NA 0.00 1.67 0.00 2.30 0.00 1.75 3.28 3.03 2.53 5.00 NA 3.23 0.00 4.69 1.23 1.65 3.85 3.23 1.10 5.77 0.85 0.00 3.06 2.15 1.64 9.09 2.56 3.03 4.76 1.82 1.35 1.45 2.42 K intron_retention CG32666 chrX + chrX_11446974_11447060 chrX_11446973_11446974;chrX_11447060_11447061 chrX_11445805_11446973;chrX_11447061_11448906 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention dnc,I_chrX_3150245_3150319,I_chrX_3150351_3152643 chrX + chrX_3232850_3233002 chrX_3232849_3232850;chrX_3233002_3233003 chrX_3232481_3232849;chrX_3233003_3233260 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.33 NA 0.00 0.00 NA 0.00 0.00 0.00 3.85 7.14 11.11 0.00 0.00 NA NA 0.00 NA 15.38 0.00 NA 0.00 NA 7.14 0.00 10.00 0.00 0.00 3.45 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 5.26 0.00 3.03 0.00 0.00 0.00 6.25 0.00 0.00 NA N cassette Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21128063_21131230;chr2L_21128063_21132033 chr2L_21128063_21128778;chr2L_21129083_21132033,chr2L_21129083_21131230 chr2L_21128779_21129082 chr2L_21127850_21128062;chr2L_21132034_21132685 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 97.50 96.43 100.00 100.00 100.00 98.68 100.00 89.77 100.00 98.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 97.22 98.57 100.00 100.00 100.00 95.83 100.00 100.00 100.00 98.44 97.67 100.00 97.73 100.00 98.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor D1,RI_chr3R_5065631_5065691,I_chr3R_5065631_5065695,I_chr3R_5065631_5065697 chr3R - chr3R_5065631_5065767;chr3R_5065631_5065697;chr3R_5065631_5065691 chr3R_5065631_5065695 chr3R_5065531_5065630;chr3R_5065768_5065790 24.07 14.63 19.23 19.12 27.50 34.55 29.31 27.27 17.72 39.13 20.69 22.22 17.78 28.57 24.07 36.28 22.22 23.81 26.79 19.51 10.00 10.34 22.73 10.53 30.77 21.05 17.24 25.00 25.00 18.75 29.69 33.87 26.44 25.61 11.63 27.03 25.93 30.43 15.15 32.41 19.35 33.33 35.71 27.27 19.75 14.95 20.00 25.86 19.47 34.29 28.57 26.92 39.53 23.81 16.90 13.04 16.22 32.17 K alternative_acceptor vsg,I_chr3L_9707724_9708265 chr3L + chr3L_9707724_9708846 chr3L_9707724_9708843 chr3L_9707624_9707723;chr3L_9708847_9710788 25.20 24.55 23.91 23.27 22.85 24.28 21.82 22.92 25.23 27.13 23.29 24.61 23.45 26.48 23.86 25.46 24.37 24.10 26.75 24.17 25.00 25.24 27.81 26.79 22.82 23.39 26.72 26.45 26.37 24.47 25.77 25.66 27.02 23.39 27.03 23.56 27.68 27.11 27.21 23.21 26.87 24.53 23.22 25.66 26.74 25.33 23.72 24.41 24.04 25.41 26.62 23.48 25.79 26.51 25.20 27.23 23.50 27.45 K intron_retention CtBP chr3R + chr3R_8844861_8845063 chr3R_8844860_8844861;chr3R_8845063_8845064 chr3R_8844757_8844860;chr3R_8845064_8845536 90.00 NA NA 86.96 88.89 90.00 96.77 84.00 88.89 NA 83.33 95.83 100.00 88.89 84.62 90.48 90.00 70.00 93.33 93.33 NA 88.89 NA 88.89 NA 100.00 NA 90.00 NA NA 83.33 NA NA 94.12 NA 90.00 NA NA NA 90.00 NA 90.00 90.91 NA NA NA NA NA 95.65 87.50 NA NA NA NA 92.31 NA NA NA K intron_retention CG3635,I_chr2L_22179420_22179486 chr2L + chr2L_22179567_22179631 chr2L_22179566_22179567;chr2L_22179631_22179632 chr2L_22179487_22179566;chr2L_22179632_22180010 9.68 3.85 11.11 25.00 5.56 7.69 17.02 14.29 7.14 NA 5.41 15.62 NA 6.67 15.15 31.03 10.53 15.00 17.14 8.33 7.14 0.00 4.44 8.57 NA 13.79 4.76 28.57 NA 20.00 4.88 NA NA 15.38 2.94 0.00 0.00 3.45 8.33 0.00 15.38 15.69 23.08 10.53 NA 9.68 22.22 NA 21.74 7.32 5.56 14.29 NA 11.76 21.43 0.00 8.82 NA K intron_retention Eps-15,I_chr2R_20660319_20660496,CRE_chr2R_20660823_20660880 chr2R - chr2R_20660527_20660734 chr2R_20660526_20660527;chr2R_20660734_20660735 chr2R_20660497_20660526;chr2R_20660735_20660822 1.98 2.82 4.35 1.23 0.00 5.26 7.14 1.25 3.33 2.44 0.00 2.73 0.00 0.00 1.59 2.78 0.00 4.55 0.00 3.07 0.00 3.57 3.36 1.64 0.00 0.00 3.49 4.00 6.38 0.00 6.52 2.47 0.00 3.09 1.61 8.00 1.50 0.00 0.00 4.55 0.00 4.10 0.00 1.33 3.57 2.11 1.54 2.35 3.67 1.79 1.98 3.17 0.00 1.64 0.00 2.38 0.00 3.75 K intron_retention CG6540 chrX + chrX_18542490_18542548 chrX_18542489_18542490;chrX_18542548_18542549 chrX_18542209_18542489;chrX_18542549_18543568 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.50 1.39 0.00 0.00 0.00 0.00 7.41 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 1.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG8232 chr2R + chr2R_4818153_4818214 chr2R_4818156_4818214 chr2R_4818215_4818510;chr2R_4818096_4818152 92.86 88.89 90.00 94.29 86.67 90.00 96.00 97.22 89.19 88.89 100.00 96.55 90.00 100.00 93.75 96.15 95.24 94.12 87.50 91.18 91.67 88.89 92.00 100.00 92.31 90.00 80.00 NA 100.00 100.00 94.74 90.00 94.44 96.77 100.00 92.86 87.50 93.33 92.86 87.50 90.91 89.47 85.71 95.00 90.00 82.35 92.86 93.33 97.30 92.86 94.12 93.75 93.33 86.67 90.32 85.71 92.86 91.67 K alternative_acceptor CG14133 chr3L - chr3L_11683209_11683325;chr3L_11683239_11683325 chr3L_11683229_11683325 chr3L_11683326_11683412;chr3L_11682731_11683208 23.53 15.38 26.67 44.44 23.08 25.00 13.33 13.33 36.59 NA 31.25 35.29 10.00 10.00 45.45 12.50 16.67 22.22 18.18 42.42 27.78 NA 20.00 NA NA 37.50 NA NA NA 23.08 26.32 20.00 37.50 22.73 NA NA 23.53 27.27 40.00 20.00 NA 38.89 28.57 22.22 30.77 18.75 15.38 25.00 31.82 25.00 31.25 NA 18.75 33.33 23.53 20.00 16.67 11.54 K intron_retention CG8675,Fim chrX - chrX_17180910_17180969 chrX_17180909_17180910;chrX_17180969_17180970 chrX_17179736_17180909;chrX_17180970_17181223 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.87 0.00 0.00 0.41 0.00 0.45 0.34 1.50 0.00 0.00 0.00 0.00 0.00 0.66 0.41 0.25 0.00 0.00 1.96 4.17 3.30 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.17 0.29 0.00 0.56 0.00 0.36 0.00 0.41 0.00 1.54 0.46 0.00 0.73 0.00 0.51 0.00 0.00 0.00 0.00 2.19 K alternative_donor CG31038,I_chr3R_25702915_25703648,I_chr3R_25705533_25722419,I_chr3R_25727788_25727905 chr3R + chr3R_25702915_25703648;chr3R_25702989_25703648;chr3R_25702895_25703648;chr3R_25702897_25703648;chr3R_25702838_25703648;chr3R_25702970_25703648 chr3R_25702901_25703648 chr3R_25703649_25703748;chr3R_25702831_25702837 36.36 42.86 18.18 16.67 NA 25.00 11.11 33.33 50.00 33.33 NA 44.44 40.00 14.29 14.29 46.15 NA 0.00 33.33 41.38 0.00 42.11 50.00 53.85 45.45 28.57 40.00 28.57 10.00 25.00 43.75 0.00 46.15 30.77 62.50 54.55 26.67 55.56 50.00 33.33 0.00 26.67 NA 36.36 33.33 50.00 50.00 25.00 30.77 33.33 45.45 44.44 40.00 42.86 22.22 44.44 50.00 50.00 K cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27707594_27784756;chr3R_27747397_27784756;chr3R_27707594_27759175 chr3R_27747397_27757793,chr3R_27707594_27757793;chr3R_27758337_27784756,chr3R_27758337_27759175 chr3R_27757794_27758336 chr3R_27707494_27707593;chr3R_27784757_27784846 17.65 29.41 22.22 22.22 6.25 17.65 21.43 5.00 14.04 25.00 8.00 21.82 4.35 9.38 7.89 7.69 NA 3.45 7.41 21.82 9.09 17.65 18.75 21.88 19.05 13.04 18.18 33.33 40.91 13.79 18.18 25.00 17.24 17.50 31.82 26.09 29.03 22.73 28.57 18.60 15.38 12.50 10.53 10.81 53.33 22.73 14.29 21.43 14.89 12.50 23.08 11.11 23.81 16.67 10.34 12.50 15.00 21.88 K alternative_donor glo,I_chr3R_7644679_7644739,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7644683_7644880;chr3R_7644683_7644932;chr3R_7644683_7644739;chr3R_7644683_7644743 chr3R_7644683_7644908 chr3R_7644583_7644682;chr3R_7644933_7644980 1.83 0.00 1.64 1.85 4.35 0.00 1.19 0.00 0.94 0.00 0.00 0.89 2.08 1.85 3.08 2.36 0.00 NA 1.61 1.98 0.00 3.68 3.48 1.92 1.96 2.17 1.98 1.15 5.77 1.89 2.47 1.22 4.55 4.76 1.61 2.53 1.69 0.00 1.54 0.77 1.82 2.68 2.50 1.03 3.64 0.00 1.64 0.85 4.48 0.00 2.74 0.00 2.38 0.00 2.38 3.53 3.30 1.67 K alternative_acceptor CG4294 chr2R - chr2R_18488870_18489034 chr2R_18488876_18489034 chr2R_18489035_18489320;chr2R_18488842_18488869 93.75 NA NA 100.00 NA NA 87.50 NA 87.50 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG5585,I_chr3L_20339275_20339338,I_chr3L_20340649_20340712 chr3L - chr3L_20339275_20339343 chr3L_20339275_20339338 chr3L_20339175_20339274;chr3L_20339344_20339438 0.00 0.00 5.56 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 1.92 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.23 0.00 0.00 0.00 0.00 0.00 K intron_retention CG12581,I_chr3R_488_577,I_chr3R_519_577,I_chr3R_9380_9438 chr3R + chr3R_510_577 chr3R_509_510;chr3R_577_578 chr3R_419_509;chr3R_578_677 75.00 80.95 73.08 80.00 75.00 69.23 64.00 86.21 83.33 66.67 NA 78.05 75.00 81.25 89.47 70.59 91.67 47.62 78.95 72.50 75.00 78.57 80.95 76.47 90.91 76.47 77.27 90.91 88.89 73.33 71.43 80.00 66.67 75.86 66.67 88.89 73.68 76.47 87.50 68.42 71.43 79.41 73.33 66.67 52.94 78.26 73.33 67.39 70.73 66.67 57.69 76.47 63.64 50.00 89.47 91.67 63.64 55.00 K alternative_donor CG1640,RI_chrX_13265127_13267895,I_chrX_13265553_13267895,I_chrX_13265618_13267895,RI_chrX_13266680_13267895,RI_chrX_13267529_13267895,I_chrX_13271541_13271890 chrX + chrX_13265560_13267895;chrX_13265401_13267895;chrX_13265248_13267895;chrX_13265094_13267895 chrX_13265295_13267895 chrX_13267896_13267973;chrX_13265065_13265093 20.69 22.73 22.22 25.71 27.78 25.00 30.43 23.53 25.00 7.14 30.00 26.32 12.50 36.36 24.00 20.69 33.33 22.22 33.33 22.00 22.73 10.34 19.23 25.00 26.67 17.65 17.24 17.65 15.15 16.13 29.17 4.17 10.64 21.21 9.09 31.58 18.92 14.29 14.71 16.67 16.67 25.71 23.53 22.73 8.00 18.75 26.32 10.81 31.71 14.29 19.35 11.11 19.05 18.18 36.84 18.75 16.67 9.84 K intron_retention CG34408,I_chrX_10120689_10121004 chrX + chrX_10116620_10118346 chrX_10116619_10116620;chrX_10118346_10118347 chrX_10116359_10116619;chrX_10118347_10118396 4.45 4.35 NA 8.70 0.00 NA 9.09 0.00 9.52 NA 0.00 6.25 NA 0.00 NA 9.52 6.67 5.26 NA 21.74 0.00 0.00 6.67 2.94 9.52 NA 0.00 5.00 14.29 0.00 NA NA NA 8.33 14.29 0.00 11.76 0.00 4.55 7.14 NA 4.65 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 2.70 0.00 NA NA 5.56 6.67 0.00 NA K jcn_only_AD I_chr3R_16141663_16144698,CG5077,I_chr3R_16147605_16147670 chr3R + chr3R_16147603_16147670 chr3R_16147605_16147670 chr3R_16147671_16147746;chr3R_16147505_16147602 0.48 0.00 0.45 0.32 0.32 0.71 0.36 0.30 0.48 1.46 0.00 0.49 0.63 0.26 0.80 0.70 0.30 0.00 0.18 0.61 0.85 0.97 0.00 0.37 0.57 0.77 1.06 3.04 0.62 1.05 0.52 0.00 0.69 0.46 0.63 0.18 0.24 0.31 0.67 0.87 0.49 0.58 0.31 0.00 0.44 0.44 0.00 0.00 0.24 0.00 0.86 1.55 0.47 0.48 0.34 0.83 0.91 0.51 K intron_retention blow,RI_chr2R_3470434_3470776 chr2R - chr2R_3470434_3474436 chr2R_3470433_3470434;chr2R_3474436_3474437 chr2R_3470334_3470433;chr2R_3474437_3474581 54.36 NA NA NA NA NA NA NA 55.56 41.67 NA 54.55 NA NA NA NA NA 90.91 NA 30.00 NA 62.50 30.77 NA 33.33 NA NA 66.67 69.57 NA 17.65 NA 54.17 NA NA NA NA NA NA 40.00 47.06 60.00 NA NA 37.50 60.00 50.00 57.14 63.64 NA 60.00 NA NA NA NA NA NA 50.00 K intron_retention CG7546 chr3L + chr3L_7508878_7508925 chr3L_7508877_7508878;chr3L_7508925_7508926 chr3L_7508741_7508877;chr3L_7508926_7508962 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 2.94 NA 6.25 13.33 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA 0.00 NA 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention Ac3,I_chr2L_21635211_21637957,I_chr2L_21643253_21646594 chr2L + chr2L_21635211_21637658 chr2L_21635210_21635211;chr2L_21637658_21637659 chr2L_21635129_21635210;chr2L_21637659_21637786 20.00 NA NA 38.46 NA NA 50.00 NA 15.79 NA NA 10.53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA 0.00 NA 20.00 NA NA NA NA NA NA 10.53 NA NA NA 60.00 NA NA NA NA 12.00 NA 28.57 NA NA NA NA NA NA NA K jcn_only_AD Med,CG1792 chr3R + chr3R_27440353_27440411 chr3R_27440357_27440411 chr3R_27440412_27441478;chr3R_27440226_27440352 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD RpL29,I_chr2R_17184688_17191389 chr2R + chr2R_17181380_17181558;chr2R_17181295_17181558 chr2R_17181384_17181558 chr2R_17181559_17181664;chr2R_17181294_17181294 1.55 1.56 1.41 1.01 1.53 1.75 1.14 1.11 1.22 2.22 1.38 1.51 1.93 1.19 1.26 1.41 1.30 1.72 1.42 1.55 1.30 0.63 2.84 2.02 2.65 1.21 5.76 1.98 2.45 1.04 1.54 2.82 1.72 1.26 2.13 2.18 2.59 2.27 3.77 1.31 1.29 1.18 1.28 2.20 1.70 2.50 2.23 1.78 1.09 2.23 1.38 2.40 1.64 4.51 1.33 3.23 1.34 1.40 K intron_retention CG6126 chr3R - chr3R_12024920_12024981 chr3R_12024919_12024920;chr3R_12024981_12024982 chr3R_12023691_12024919;chr3R_12024982_12025616 0.00 0.00 2.15 2.86 0.00 0.00 1.39 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.51 0.00 1.32 0.00 0.00 1.54 5.71 0.00 3.45 0.00 2.27 0.79 0.00 0.00 0.00 1.67 0.00 1.12 0.93 1.85 1.47 0.00 0.00 0.00 0.00 0.00 3.08 0.00 0.00 4.11 0.00 0.00 0.00 0.00 1.27 0.00 1.19 K alternative_donor Pvr,I_chr2L_8226604_8228082,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8227151_8227669 chr2L_8227151_8227651 chr2L_8227095_8227150;chr2L_8227670_8227720 75.00 80.00 72.73 95.24 90.48 78.26 64.71 78.79 77.14 55.00 NA 79.07 91.67 88.24 76.67 62.26 62.96 67.86 79.41 65.52 87.50 NA 70.00 72.41 84.00 72.00 84.00 NA 77.78 71.43 74.36 55.56 66.67 77.78 76.00 58.62 75.00 84.21 75.00 80.43 55.56 78.00 56.25 53.85 87.50 75.00 75.00 66.67 83.33 75.00 80.00 70.83 61.11 69.23 87.50 65.00 NA 80.00 K intron_retention r-l chr3R - chr3R_16896496_16896551 chr3R_16896495_16896496;chr3R_16896551_16896552 chr3R_16896446_16896495;chr3R_16896552_16896639 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.64 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.41 100.00 100.00 100.00 K mutually_exclusive CG5674 chr2L + chr2L_17963606_17971871,chr2L_17972004_17972262 chr2L_17963606_17969371,chr2L_17969519_17972262 chr2L_17971872_17972003 chr2L_17969372_17969518 chr2L_17963396_17963605;chr2L_17972263_17974832 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 83.33 NA NA NA NA NA 84.62 NA NA NA NA NA NA 100.00 NA NA 80.00 K jcn_only_AD CG17829 chrX + chrX_520827_520931 chrX_520854_520931 chrX_520932_521515;chrX_520537_520826 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA 95.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG12567,I_chr2LHet_20671_20722,I_chr2LHet_21570_31874 chr2LHet - chr2LHet_20651_20722 chr2LHet_20671_20722 chr2LHet_20723_20822;chr2LHet_20571_20650 0.57 0.91 0.00 0.00 0.95 0.00 0.43 0.42 0.27 1.59 0.95 0.36 0.79 0.00 0.58 0.66 0.00 1.88 1.01 0.45 1.41 0.44 0.00 1.76 1.22 0.00 0.00 1.31 0.88 0.69 1.52 0.37 0.60 1.10 0.79 0.00 0.62 0.00 0.00 0.36 0.00 0.66 0.00 2.15 0.66 0.57 1.55 0.38 0.86 0.00 1.37 1.54 0.00 0.00 0.49 0.00 0.58 0.00 K alternative_acceptor Mob4 chr2R - chr2R_2583337_2583396 chr2R_2583349_2583396 chr2R_2583397_2583465;chr2R_2583268_2583336 5.21 5.41 6.99 6.16 6.90 2.14 5.92 4.92 4.78 5.45 5.49 4.26 4.12 5.21 3.14 5.11 4.12 2.61 6.32 5.84 4.67 5.88 4.13 4.24 6.38 6.82 6.31 3.15 8.33 5.97 6.03 8.57 5.71 5.11 6.84 2.88 5.00 4.25 5.59 6.53 5.04 4.00 3.12 6.56 4.55 4.19 6.00 3.70 5.60 5.73 5.48 4.31 2.55 5.03 7.43 4.06 4.07 5.45 K alternative_donor stc chr2L + chr2L_15114214_15114299 chr2L_15114235_15114299 chr2L_15114300_15114310;chr2L_15114049_15114213 18.67 23.44 13.79 16.98 12.24 17.86 20.93 21.35 17.95 20.00 19.15 18.87 19.23 19.05 30.99 12.09 18.92 20.37 17.39 18.67 21.28 17.54 19.23 24.21 22.89 16.67 24.56 20.88 38.46 16.36 18.18 13.08 13.97 17.98 14.10 30.59 22.22 21.74 22.43 17.91 21.83 17.70 16.00 17.14 11.45 18.12 12.16 15.89 13.68 20.00 17.60 20.83 22.03 13.79 21.33 18.03 19.61 12.84 K intron_retention CG10365,I_chr3R_19554176_19554388 chr3R + chr3R_19554263_19554388 chr3R_19554262_19554263;chr3R_19554388_19554389 chr3R_19554197_19554262;chr3R_19554389_19554488 21.05 NA NA NA NA 50.00 53.85 25.00 19.23 0.00 5.56 42.11 0.00 NA 41.67 12.50 NA 10.53 30.77 16.67 NA NA 25.00 NA NA NA NA NA NA NA 40.00 28.57 17.65 41.18 16.67 NA 14.29 NA 23.08 26.92 7.69 45.00 NA 26.67 10.53 16.67 21.05 19.44 25.00 25.00 20.00 NA 15.38 11.11 27.78 17.65 NA 31.58 K intron_retention CG4389,I_chr2L_9576230_9576665 chr2L - chr2L_9575239_9575294 chr2L_9575238_9575239;chr2L_9575294_9575295 chr2L_9574469_9575238;chr2L_9575295_9575435 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6701,RI_chr2R_9866896_9867532 chr2R - chr2R_9861916_9862095 chr2R_9861915_9861916;chr2R_9862095_9862096 chr2R_9860549_9861915;chr2R_9862096_9862342 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 1.18 0.00 1.80 0.00 0.00 0.00 1.35 0.00 0.69 0.00 0.00 0.00 0.00 1.47 0.00 0.84 2.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 K alternative_donor I_chr3L_18664773_18665233,GNBP2,I_chr3L_18667579_18667644 chr3L - chr3L_18668078_18668437;chr3L_18668078_18668478 chr3L_18668078_18668318 chr3L_18667645_18668077;chr3L_18668479_18668494 83.33 100.00 88.89 89.19 83.33 81.25 90.20 93.18 82.00 NA 83.33 73.68 73.68 84.21 92.31 95.83 76.19 76.92 88.46 67.44 83.33 81.82 86.67 86.67 75.00 83.33 92.31 85.71 87.50 71.43 74.07 77.78 80.00 87.50 100.00 87.50 68.75 100.00 58.33 80.00 66.67 75.86 81.25 78.57 87.50 92.31 56.25 90.91 84.44 75.00 84.62 78.57 NA 100.00 71.43 80.00 100.00 92.31 K cassette sec31,I_chr2R_4783150_4783708 chr2R + chr2R_4783150_4783708 chr2R_4783150_4783455;chr2R_4783559_4783708 chr2R_4783456_4783558 chr2R_4783050_4783149;chr2R_4783709_4783808 98.65 99.04 100.00 99.40 98.78 100.00 94.12 98.09 99.05 97.73 96.51 98.83 100.00 98.84 98.20 99.28 100.00 97.59 98.89 98.65 98.82 92.52 96.34 99.14 97.33 97.59 98.40 98.44 97.06 97.50 93.88 100.00 97.87 99.32 98.65 95.12 99.25 97.89 98.06 99.21 98.18 98.91 98.53 98.97 95.16 97.65 99.10 98.08 99.38 99.17 97.24 98.68 100.00 98.90 100.00 98.85 98.60 98.53 K intron_retention Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11837971_11838662 chr2R_11837970_11837971;chr2R_11838662_11838663 chr2R_11837919_11837970;chr2R_11838663_11838663 2.41 2.54 3.26 5.51 1.19 1.98 3.95 2.17 3.23 1.68 0.00 3.11 0.00 3.90 1.00 3.81 2.82 3.49 3.08 2.58 0.00 23.31 1.90 1.42 1.75 7.41 3.53 1.92 3.21 1.42 1.52 1.92 3.17 3.51 2.88 1.57 1.47 3.23 1.63 1.92 4.27 1.85 1.82 1.27 1.89 3.09 3.01 1.40 1.27 2.33 3.70 2.41 2.78 3.92 3.03 0.00 0.00 3.39 K intron_retention CG15609,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12902708_12903167 chr2R_12902707_12902708;chr2R_12903167_12903168 chr2R_12902608_12902707;chr2R_12903168_12903182 3.70 NA 7.14 9.68 NA 14.29 25.00 3.70 9.30 NA NA 4.76 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 8.70 NA NA NA 0.00 NA 12.50 5.26 NA 16.67 NA NA NA 6.06 5.88 3.03 0.00 7.69 NA 0.00 NA 0.00 6.45 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention CG5224 chr2R + chr2R_14391167_14391245 chr2R_14391166_14391167;chr2R_14391245_14391246 chr2R_14391098_14391166;chr2R_14391246_14391354 3.03 0.00 0.00 0.00 0.00 0.00 6.56 5.71 0.00 2.17 0.00 0.00 0.00 0.00 5.26 9.52 13.33 0.00 7.41 2.44 0.00 4.92 8.89 0.00 4.88 10.53 18.18 13.79 29.41 3.57 3.03 5.26 7.69 6.06 0.00 16.67 0.00 2.70 0.00 0.00 22.73 5.77 0.00 8.00 0.00 2.56 0.00 12.50 10.00 3.57 4.17 2.94 0.00 0.00 10.71 2.13 3.64 21.05 K intron_retention CG17494 chr2L + chr2L_22473866_22476853 chr2L_22473865_22473866;chr2L_22476853_22476854 chr2L_22472624_22473865;chr2L_22476854_22477414 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 2.74 0.00 1.10 0.00 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG1815,I_chr3R_27501104_27501176 chr3R + chr3R_27495663_27496497 chr3R_27495663_27496485 chr3R_27495539_27495662;chr3R_27496498_27497517 90.48 87.18 89.74 87.50 82.86 94.74 79.17 87.10 87.10 92.86 97.14 83.64 91.43 94.29 88.89 92.00 93.55 90.00 93.02 86.15 100.00 84.62 86.05 97.83 96.15 93.55 96.00 92.86 81.82 96.88 89.36 90.48 85.42 92.54 78.57 85.29 96.36 74.07 90.24 86.49 NA 92.68 89.29 83.33 NA 88.46 NA 92.41 91.43 95.00 90.70 95.00 NA NA 91.38 NA NA NA K alternative_acceptor lama,I_chr3L_5346888_5347714 chr3L - chr3L_5340784_5347714 chr3L_5346888_5347714 chr3L_5347715_5347814;chr3L_5340732_5340783 0.00 0.00 0.00 4.76 0.00 0.00 3.57 3.45 3.23 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 2.27 2.86 0.00 0.00 0.00 3.70 21.95 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention Trn chr3L + chr3L_6190658_6190713 chr3L_6190657_6190658;chr3L_6190713_6190714 chr3L_6190483_6190657;chr3L_6190714_6191987 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 7.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention SP2637,Gint3 chr2R - chr2R_14528699_14528963 chr2R_14528698_14528699;chr2R_14528963_14528964 chr2R_14528389_14528698;chr2R_14528964_14529077 100.00 88.46 95.65 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 97.92 96.97 94.74 100.00 100.00 94.12 100.00 82.61 100.00 94.12 95.83 100.00 95.00 100.00 97.14 96.15 96.77 98.04 95.00 97.67 100.00 100.00 95.83 100.00 100.00 100.00 100.00 98.00 97.44 100.00 100.00 96.43 97.06 94.44 95.74 100.00 K intron_retention sgg,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2565856_2566946 chrX_2565855_2565856;chrX_2566946_2566947 chrX_2565756_2565855;chrX_2566947_2567046 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG12030 chr3L + chr3L_649052_649178 chr3L_649052_649125 chr3L_648517_649051;chr3L_649179_649419 1.06 0.85 1.28 1.65 0.96 0.93 1.02 0.88 0.77 1.33 1.06 1.07 0.78 1.05 0.77 1.06 0.92 0.74 0.67 0.90 1.21 15.52 0.71 0.67 1.21 1.63 0.63 3.35 9.45 1.11 1.17 1.32 1.94 0.86 1.68 0.79 0.66 1.35 1.33 1.77 2.82 1.22 0.93 0.55 1.78 1.64 1.14 1.74 0.70 1.89 1.02 0.74 0.81 1.48 1.25 0.95 0.41 1.09 K cassette tou,RI_chr2R_7474644_7475275,I_chr2R_7479681_7491857,I_chr2R_7504956_7505020 chr2R - chr2R_7474644_7475275 chr2R_7474644_7475150;chr2R_7475217_7475275 chr2R_7475151_7475216 chr2R_7474602_7474643;chr2R_7475276_7475375 96.97 96.43 96.97 98.04 95.24 96.15 93.62 96.00 98.55 92.86 100.00 96.49 96.67 96.43 96.67 98.00 100.00 100.00 97.06 90.77 100.00 97.01 98.21 100.00 96.15 96.55 97.06 100.00 63.79 98.11 96.55 95.00 92.13 100.00 96.97 92.59 98.21 96.43 97.30 98.48 96.15 96.55 95.24 97.62 93.75 96.43 100.00 98.77 98.39 100.00 97.92 96.67 94.74 100.00 100.00 94.74 92.86 100.00 K intron_retention CG16791 chr3R - chr3R_17149476_17149602 chr3R_17149475_17149476;chr3R_17149602_17149603 chr3R_17149338_17149475;chr3R_17149603_17149740 0.00 5.13 0.00 3.85 3.70 0.00 3.45 0.00 3.39 1.89 0.00 5.26 0.00 0.00 0.00 0.00 8.33 0.00 5.26 0.00 0.00 3.70 1.45 3.64 0.00 5.71 2.13 3.85 0.00 0.00 0.00 0.00 0.00 3.08 0.00 0.00 2.53 1.82 1.11 3.49 2.38 1.33 0.00 0.00 7.02 0.00 0.00 2.27 1.59 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 3.08 K intron_retention kis,RI_chr2L_218886_227371,RI_chr2L_231035_231947,RI_chr2L_242745_242800,I_chr2L_242926_250756 chr2L - chr2L_226509_227371 chr2L_226508_226509;chr2L_227371_227372 chr2L_226116_226508;chr2L_227372_227471 0.00 0.00 0.00 2.56 0.00 0.00 2.22 0.00 1.09 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K cassette opa1-like,I_chr2R_10119470_10120234,I_chr2R_10121848_10121900,I_chr2R_10122128_10122197,I_chr2R_10122334_10122393 chr2R - chr2R_10121848_10122197 chr2R_10121848_10121947;chr2R_10122065_10122197 chr2R_10121948_10122064 chr2R_10121778_10121847;chr2R_10122198_10122227 37.74 40.28 47.95 17.74 39.22 30.00 24.62 30.58 34.50 37.74 32.00 32.17 34.92 42.86 44.44 55.68 44.83 37.31 35.90 32.39 40.00 54.03 41.09 38.54 24.00 28.00 40.00 34.78 41.00 44.32 48.72 41.27 35.62 41.44 36.25 18.75 36.28 36.47 42.16 43.83 32.41 35.84 30.30 40.35 34.67 39.58 37.97 47.83 37.76 41.27 42.59 34.62 31.03 41.18 45.26 34.04 32.76 35.14 K jcn_only_AD AnnIX chr3R + chr3R_16891008_16893167;chr3R_16891137_16893167;chr3R_16891033_16893167 chr3R_16891124_16893167 chr3R_16893168_16893221;chr3R_16890951_16891007 14.29 13.85 11.46 11.01 13.33 14.12 24.36 8.94 11.33 16.67 25.84 14.22 23.58 12.44 7.28 12.16 10.34 10.60 11.54 10.45 22.89 14.89 16.67 17.20 18.00 12.79 18.25 14.29 18.75 31.58 14.62 14.63 9.68 8.70 26.23 28.41 18.42 16.42 15.71 13.33 13.21 10.66 11.61 23.08 8.57 20.26 20.56 14.29 10.76 30.23 22.45 12.68 20.34 21.70 9.86 26.26 22.35 12.16 K intron_retention CG8889 chr2R - chr2R_7914491_7914546 chr2R_7914490_7914491;chr2R_7914546_7914547 chr2R_7914406_7914490;chr2R_7914547_7914656 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 10.81 0.00 0.00 0.00 0.00 0.00 NA 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K alternative_acceptor rgn chr3L + chr3L_21413463_21413564 chr3L_21413463_21413540 chr3L_21413351_21413462;chr3L_21413565_21413789 50.00 42.31 41.38 72.97 42.42 37.04 84.00 52.38 46.15 46.15 59.09 43.28 40.74 53.12 41.86 46.34 51.85 43.75 40.00 50.00 55.17 25.58 47.17 58.54 57.14 57.14 58.33 92.86 69.57 46.15 48.48 50.00 51.43 40.00 51.52 60.00 55.56 45.45 47.54 46.77 NA 42.67 53.85 29.17 40.91 65.79 55.77 42.86 40.82 72.09 50.88 53.85 64.52 65.00 46.51 73.17 78.72 46.67 K jcn_only_AD CG17490 chr2L + chr2L_22431120_22432684;chr2L_22431088_22432684;chr2L_22431020_22432684 chr2L_22431301_22432684 chr2L_22432685_22433056;chr2L_22431014_22431019 58.19 NA NA NA NA NA NA 41.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 K jcn_only_AD Syx4,I_chrX_2635555_2635621,I_chrX_2636831_2636971 chrX - chrX_2633579_2633652;chrX_2633579_2635455 chrX_2633579_2633742 chrX_2633330_2633578;chrX_2635456_2635529 17.65 20.00 14.89 11.90 16.13 24.36 13.64 14.18 17.72 54.55 15.48 10.24 27.91 15.71 20.20 14.78 19.72 18.99 18.00 17.58 22.54 9.09 12.31 19.70 15.38 23.53 12.20 11.54 NA 8.00 12.73 20.97 26.21 14.44 19.72 16.67 16.07 21.15 15.58 18.52 13.11 18.13 13.51 5.13 15.70 20.79 22.73 17.98 21.15 10.34 17.91 17.07 34.38 25.00 15.97 24.36 22.22 31.00 K alternative_donor REI_chr3L_3042451_3043440,Jafrac2,I_chr3L_3042851_3043044,I_chr3L_3043202_3043271 chr3L + chr3L_3043202_3043271 chr3L_3043206_3043271 chr3L_3043272_3043339;chr3L_3043138_3043201 100.00 98.63 100.00 98.08 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 97.37 100.00 96.77 97.50 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 97.78 96.43 100.00 96.97 97.56 100.00 100.00 100.00 100.00 100.00 100.00 97.89 100.00 96.30 98.96 100.00 100.00 100.00 98.39 98.63 100.00 100.00 98.75 98.31 97.62 100.00 98.57 100.00 98.77 99.26 100.00 K alternative_donor CG3508 chr3R + chr3R_10485305_10485465 chr3R_10485338_10485465 chr3R_10485466_10486020;chr3R_10485170_10485304 13.33 NA NA NA NA NA NA 30.77 21.43 NA NA 18.75 NA NA NA 9.09 NA NA NA 12.50 NA NA 5.00 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA 18.75 NA 14.29 NA NA NA NA 13.33 NA NA K alternative_acceptor dah,I_chrX_15223901_15223968,I_chrX_15232958_15233665 chrX + chrX_15222986_15223051 chrX_15222986_15223042 chrX_15222858_15222985;chrX_15223052_15223900 100.00 100.00 100.00 100.00 100.00 NA 100.00 90.91 100.00 NA NA 92.31 NA NA 100.00 100.00 NA 100.00 NA 100.00 NA NA 100.00 100.00 NA NA 90.00 NA NA NA 100.00 NA 91.67 100.00 NA 100.00 100.00 NA 100.00 92.86 NA 100.00 NA NA 87.50 NA 91.67 100.00 92.31 90.00 NA 88.89 NA NA 87.50 NA NA NA K intron_retention CG10959,I_chrX_8043524_8043577,I_chrX_8043625_8043682 chrX + chrX_8043510_8043577 chrX_8043509_8043510;chrX_8043577_8043578 chrX_8043424_8043509;chrX_8043578_8043624 0.00 NA NA 0.00 NA NA NA NA 5.26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 K intron_retention CG6490,F_chr3R_22303527_22303741 chr3R - chr3R_22358145_22360445 chr3R_22358144_22358145;chr3R_22360445_22360446 chr3R_22357835_22358144;chr3R_22360446_22360939 71.43 NA 66.67 69.23 NA NA 68.18 100.00 68.18 NA NA 76.47 NA NA NA 71.43 63.64 77.78 63.64 81.82 NA 70.00 NA NA NA 90.00 NA NA NA NA 88.89 NA 66.67 90.00 NA 66.67 NA NA NA NA NA 80.00 NA NA NA NA NA 61.54 78.95 NA NA NA NA NA 73.33 NA NA NA K cassette l(2)k09913 chr2R + chr2R_18954831_18958129 chr2R_18954831_18955469;chr2R_18955652_18958129 chr2R_18955470_18955651 chr2R_18954762_18954830;chr2R_18958130_18958411 95.77 95.40 93.94 65.00 88.24 93.10 94.74 81.08 94.57 95.77 83.33 96.55 97.37 90.91 88.89 88.89 100.00 92.16 97.44 98.64 85.19 95.30 99.09 98.39 98.46 87.80 88.71 79.17 97.70 92.16 96.88 97.83 96.05 98.55 94.74 97.00 97.24 97.03 96.69 94.36 92.93 92.14 97.73 96.04 96.70 96.64 96.23 97.12 97.22 90.28 98.95 98.33 99.00 92.55 95.16 97.83 94.44 93.81 K intron_retention Cpr chr2L + chr2L_6344284_6344343 chr2L_6344283_6344284;chr2L_6344343_6344344 chr2L_6344159_6344283;chr2L_6344344_6344945 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.60 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention NetB,CG32595,I_chrX_14642093_14642682,CG15890 chrX - chrX_14612668_14612726 chrX_14612667_14612668;chrX_14612726_14612727 chrX_14612288_14612667;chrX_14612727_14612985 0.00 0.00 0.00 2.86 0.00 0.00 4.00 0.00 0.00 0.00 NA 3.92 0.00 0.00 0.00 0.00 0.00 NA 2.70 0.00 NA NA 3.85 0.00 0.00 0.00 8.70 NA 0.00 NA 0.00 NA 7.14 10.53 NA 0.00 0.00 0.00 0.00 0.00 0.00 7.69 3.45 9.52 NA 0.00 0.00 NA 0.00 8.33 0.00 0.00 10.53 0.00 0.00 9.68 5.13 0.00 K intron_retention RpL10Ab chr3L + chr3L_11816456_11816757 chr3L_11816455_11816456;chr3L_11816757_11816758 chr3L_11816300_11816455;chr3L_11816758_11817314 1.00 0.98 0.87 0.84 0.74 0.86 0.77 1.16 0.77 1.34 0.81 0.92 1.04 0.98 0.83 0.60 0.95 0.77 0.94 0.83 0.80 1.30 1.13 0.99 1.34 0.91 1.04 2.65 1.25 1.44 3.35 1.20 1.84 1.00 1.18 1.01 1.03 1.35 1.02 0.91 1.47 0.86 0.73 1.44 1.36 1.02 1.08 0.87 1.75 1.49 1.65 1.31 0.85 0.85 0.91 1.32 0.95 0.75 N multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814174;chr2R_2814327_2816013;chr2R_2816342_2816577;chr2R_2816779_2817753 chr2R_2814175_2814326;chr2R_2816014_2816341;chr2R_2816578_2816778 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention cnc,I_chr3R_19014852_19016738,I_chr3R_19046366_19046507,I_chr3R_19046619_19047567 chr3R - chr3R_19035606_19043600 chr3R_19035605_19035606;chr3R_19043600_19043601 chr3R_19035330_19035605;chr3R_19043601_19044848 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 4.26 0.00 NA 0.00 NA 0.00 3.12 0.00 0.00 0.00 0.00 0.00 NA 2.35 0.00 0.00 0.00 0.00 0.00 0.00 3.77 2.70 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 5.26 0.00 6.67 0.00 6.25 0.00 0.00 5.63 0.00 NA 0.00 0.00 0.00 0.00 5.00 0.00 NA 5.00 K intron_retention Tao-1,E_chrX_19467010_19469645 chrX - chrX_19467262_19467323 chrX_19467261_19467262;chrX_19467323_19467324 chrX_19466899_19467261;chrX_19467324_19467497 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.49 0.00 0.00 1.54 0.00 2.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17471,RI_chr4_1213397_1214333,RI_chr4_1213397_1216053,RI_chr4_1214248_1214333,I_chr4_1214293_1214333,RI_chr4_1215991_1216053,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1213397_1214185 chr4_1213396_1213397;chr4_1214185_1214186 chr4_1213332_1213396;chr4_1214186_1214247 0.00 0.00 2.33 18.18 0.00 0.00 7.81 5.26 2.08 NA 0.00 3.77 0.00 0.00 0.00 1.14 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.78 NA NA 0.00 0.00 0.00 2.56 3.49 0.00 7.69 0.00 0.00 0.00 0.00 0.00 2.82 5.13 0.00 0.00 0.00 0.00 2.63 5.56 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention hts,I_chr2R_15311185_15312327,I_chr2R_15311303_15311544,I_chr2R_15311303_15312026 chr2R - chr2R_15311303_15312327 chr2R_15311302_15311303;chr2R_15312327_15312328 chr2R_15311203_15311302;chr2R_15312328_15312346 5.80 7.69 2.38 28.57 0.00 3.12 12.24 7.81 6.48 NA 0.00 3.03 6.06 9.68 10.34 17.07 0.00 0.00 8.57 2.56 0.00 0.00 0.00 13.04 30.77 5.56 0.00 NA NA NA 5.71 NA NA 7.14 NA 0.00 3.85 NA 8.70 7.14 NA 5.80 6.25 11.43 NA NA NA NA 3.92 0.00 2.86 8.33 NA NA 7.14 0.00 6.25 NA K intron_retention egl chr2R - chr2R_19626395_19631859 chr2R_19626394_19626395;chr2R_19631859_19631860 chr2R_19626149_19626394;chr2R_19631860_19632137 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor I_chr2L_13965397_13965694,RI_chr2L_13967695_13967746,nimB4 chr2L - chr2L_13969445_13969618 chr2L_13969461_13969618 chr2L_13969619_13969964;chr2L_13968897_13969444 100.00 97.30 100.00 100.00 100.00 100.00 100.00 98.59 99.12 100.00 97.44 96.34 98.57 100.00 100.00 97.67 97.44 97.62 100.00 100.00 100.00 95.83 92.31 100.00 100.00 95.12 96.88 100.00 100.00 95.00 78.12 100.00 100.00 100.00 100.00 95.83 97.30 100.00 97.37 94.29 96.30 98.72 97.06 100.00 96.55 100.00 100.00 100.00 97.73 98.11 100.00 92.31 100.00 100.00 100.00 100.00 98.85 98.89 K cassette CG4266,I_chr2R_17052549_17053657 chr2R - chr2R_17052549_17054234 chr2R_17052549_17053063;chr2R_17053380_17054234 chr2R_17053064_17053379 chr2R_17052449_17052548;chr2R_17054235_17054339 85.87 89.91 84.88 77.12 91.55 92.41 80.00 82.14 88.30 92.37 83.58 85.87 73.77 80.95 93.15 78.02 88.52 89.29 78.57 86.91 79.76 88.89 86.22 90.97 78.00 74.36 76.12 87.50 90.76 89.71 42.07 84.95 82.08 85.40 85.12 72.64 88.35 87.68 85.47 84.08 69.66 87.24 90.91 84.48 96.23 77.21 85.95 82.90 87.58 87.74 86.54 83.82 88.33 83.16 90.91 84.76 88.17 89.93 K alternative_acceptor CG14225,I_chrX_19569702_19569879,I_chrX_19573364_19573474 chrX - chrX_19569689_19569836 chrX_19569702_19569836 chrX_19569837_19569924;chrX_19569602_19569688 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046129 chr3L_16045250_16045251;chr3L_16046129_16046130 chr3L_16045216_16045250;chr3L_16046130_16046204 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 NA 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 K intron_retention CG1427,RI_chr3R_1427548_1427635 chr3R + chr3R_1427585_1427681 chr3R_1427584_1427585;chr3R_1427681_1427682 chr3R_1427482_1427584;chr3R_1427682_1427704 95.91 100.00 92.31 100.00 100.00 100.00 92.86 100.00 95.24 NA 100.00 91.67 86.67 100.00 88.24 91.67 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 92.86 93.33 100.00 100.00 100.00 90.00 96.55 100.00 100.00 92.86 100.00 94.12 94.12 92.86 94.12 96.00 90.00 95.83 90.00 100.00 93.75 88.89 100.00 93.75 95.45 92.31 92.31 100.00 100.00 100.00 86.67 92.86 92.86 96.00 K intron_retention CG1513,I_chr2R_5778649_5778739 chr2R - chr2R_5774560_5774670 chr2R_5774559_5774560;chr2R_5774670_5774671 chr2R_5774436_5774559;chr2R_5774671_5774914 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention HLH106,RI_chr3L_19787260_19787323 chr3L + chr3L_19787251_19788001 chr3L_19787250_19787251;chr3L_19788001_19788002 chr3L_19787160_19787250;chr3L_19788002_19789492 60.00 50.00 63.16 52.94 NA 66.67 60.87 60.71 34.62 NA 60.00 65.52 58.82 56.52 40.00 81.40 60.00 30.77 56.52 54.84 45.45 66.67 54.55 60.00 NA 60.00 41.67 NA 46.15 NA 52.63 NA NA 58.62 80.00 NA NA 63.64 NA NA NA 62.50 55.00 NA NA 66.67 NA 46.15 52.17 NA 60.00 NA NA NA 68.18 63.64 87.50 NA K jcn_only_AA CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9905053_9905137 chr2L_9905084_9905137 chr2L_9905138_9905241;chr2L_9904827_9905052 3.85 3.57 0.00 NA NA NA NA NA 0.00 NA NA 5.00 NA NA 4.17 NA NA 0.00 NA 2.63 NA 1.47 8.11 3.45 NA NA 2.70 4.55 11.48 15.62 NA 5.88 6.67 0.00 3.85 10.00 2.63 13.89 2.44 5.00 31.43 2.86 NA 2.04 0.00 5.56 3.03 2.04 10.34 3.57 0.00 NA 6.06 3.70 8.00 4.76 4.55 6.25 K intron_retention Ndae1,I_chr2L_7231127_7234203,I_chr2L_7231184_7234525,I_chr2L_7231981_7234526,CREI_chr2L_7232646_7232704,I_chr2L_7234342_7234526 chr2L - chr2L_7231184_7234526 chr2L_7231183_7231184;chr2L_7234526_7234527 chr2L_7231127_7231183;chr2L_7234527_7234625 0.00 0.00 0.00 0.00 3.70 2.94 10.87 1.96 6.25 0.00 7.14 6.35 0.00 0.00 0.00 2.56 3.33 3.33 0.00 4.44 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 4.76 4.65 NA 0.00 3.17 9.09 0.00 0.00 0.00 5.26 6.25 0.00 1.47 0.00 0.00 0.00 0.00 NA 0.00 1.41 NA 0.00 0.00 NA NA 5.26 NA 0.00 0.00 K intron_retention CG40042 chr2LHet - chr2LHet_168170_168233 chr2LHet_168169_168170;chr2LHet_168233_168234 chr2LHet_167980_168169;chr2LHet_168234_168403 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9947,eIF-2alpha chrX - chrX_16334196_16334249 chrX_16334195_16334196;chrX_16334249_16334250 chrX_16333860_16334195;chrX_16334250_16334445 2.42 7.03 1.45 2.98 2.30 1.36 2.90 2.30 2.44 3.97 1.08 2.37 2.70 2.65 2.11 4.39 0.42 1.46 2.35 2.42 2.02 4.24 2.45 2.37 3.74 2.29 1.92 1.82 3.45 2.21 2.48 1.86 2.66 2.62 2.74 6.79 3.61 17.65 1.56 3.19 4.13 2.58 1.14 2.47 2.61 2.31 1.89 3.39 2.12 3.43 2.05 2.14 1.64 2.42 1.32 5.68 2.36 3.17 K intron_retention EloA chr3R + chr3R_19077680_19077970 chr3R_19077679_19077680;chr3R_19077970_19077971 chr3R_19077294_19077679;chr3R_19077971_19078558 3.33 5.26 0.00 11.43 NA 0.00 12.50 6.06 10.00 0.00 NA 13.04 0.00 0.00 0.00 0.00 NA 0.00 NA 3.08 NA 13.04 3.61 0.00 4.44 NA 6.82 5.45 15.79 2.44 0.00 0.00 3.92 6.67 3.33 0.00 5.26 4.35 1.72 4.29 7.69 4.65 NA 3.92 0.00 3.33 0.00 0.00 2.78 11.76 3.77 0.00 0.00 6.67 3.85 0.00 0.00 0.00 K intron_retention CG9572 chrX + chrX_20044870_20044977 chrX_20044869_20044870;chrX_20044977_20044978 chrX_20044631_20044869;chrX_20044978_20045059 0.00 14.29 NA NA NA NA NA NA 8.33 NA NA 0.00 NA NA NA NA NA NA NA 9.09 NA NA 0.00 0.00 NA NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 4.44 3.85 0.00 0.00 NA 8.33 0.00 0.00 0.00 NA 0.00 0.00 3.85 NA NA NA NA 8.33 0.00 4.76 K cassette CG11299,noncoding_8970,I_chr2R_19602423_19609308,I_chr2R_19619053_19619186 chr2R + chr2R_19601642_19609732;chr2R_19601642_19616571 chr2R_19601642_19602229;chr2R_19602423_19609732,chr2R_19602423_19616571 chr2R_19602230_19602422 chr2R_19601628_19601641;chr2R_19616572_19616757 97.87 95.65 100.00 97.06 90.00 100.00 100.00 95.24 96.72 100.00 100.00 96.97 96.67 100.00 100.00 97.56 100.00 95.00 96.43 98.15 100.00 100.00 88.46 93.75 87.50 100.00 95.00 100.00 80.00 90.91 95.83 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 90.00 97.44 94.74 100.00 100.00 93.75 100.00 100.00 97.87 91.67 96.00 91.67 100.00 91.67 96.55 93.75 100.00 100.00 K intron_retention I_chr3R_8822346_8822403,CG7518 chr3R + chr3R_8824823_8825162 chr3R_8824822_8824823;chr3R_8825162_8825163 chr3R_8824749_8824822;chr3R_8825163_8825241 6.67 7.14 3.57 1.72 0.00 8.33 6.56 2.67 6.12 3.70 10.34 4.46 16.00 5.45 8.89 7.04 7.69 21.74 6.38 10.10 11.11 8.22 3.45 5.06 3.92 8.89 5.26 12.50 6.82 4.62 9.68 9.38 7.02 5.33 6.67 3.57 14.13 5.63 5.61 5.94 10.00 6.00 6.98 3.12 23.08 16.07 4.35 5.08 6.12 6.45 5.21 14.29 16.67 10.81 3.57 14.29 27.59 8.33 K intron_retention fwd,I_chr3L_310787_310918,RI_chr3L_319514_319746 chr3L - chr3L_307631_307694 chr3L_307630_307631;chr3L_307694_307695 chr3L_307512_307630;chr3L_307695_310178 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 4.44 0.00 2.11 10.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.68 0.00 0.00 0.00 2.90 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_donor ATPsyn-Cf6,I_chr3R_19181508_19181563,I_chr3R_19181524_19181702 chr3R - chr3R_19181508_19183230;chr3R_19181508_19181702 chr3R_19181508_19181584 chr3R_19181424_19181507;chr3R_19183231_19184049 2.45 1.74 0.64 3.48 0.71 1.41 4.17 2.07 2.24 3.28 2.17 1.86 3.25 0.83 1.63 1.89 1.68 2.78 2.94 1.35 2.82 2.70 3.06 2.45 6.84 4.03 4.97 1.92 6.47 3.25 2.56 0.60 2.02 1.49 3.12 3.36 2.94 2.78 2.14 3.23 0.61 0.67 1.80 3.70 1.26 3.28 2.09 2.22 1.27 4.27 3.85 3.74 2.82 3.03 1.67 2.13 3.46 1.41 K jcn_only_AD fws,CG6453 chr2L - chr2L_17480920_17480968;chr2L_17480920_17480972;chr2L_17480920_17480983 chr2L_17480920_17481149 chr2L_17480825_17480919;chr2L_17481150_17481199 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention MB6.chr3R.pasa.9963,lig3 chr3R - chr3R_8222988_8223055 chr3R_8222987_8222988;chr3R_8223055_8223056 chr3R_8222926_8222987;chr3R_8223056_8223250 7.29 10.81 11.43 18.64 4.76 3.23 7.81 7.08 6.74 NA 0.00 5.00 5.66 4.17 8.89 9.64 11.63 5.88 5.63 8.22 0.00 10.00 21.21 9.09 0.00 0.00 24.44 NA NA 4.35 19.48 12.50 14.29 7.50 6.45 0.00 22.22 8.82 0.00 6.67 0.00 9.09 8.93 0.00 6.25 3.45 8.00 25.00 7.92 8.33 2.38 8.70 0.00 0.00 6.78 10.81 0.00 15.38 K jcn_only_AA CG1074,I_chr3R_261173_261244,RI_chr3R_265878_265942 chr3R + chr3R_261173_261244 chr3R_261173_261228 chr3R_261073_261172;chr3R_261245_261344 100.00 100.00 96.15 100.00 100.00 NA 97.14 95.00 100.00 96.55 100.00 100.00 NA 100.00 97.37 100.00 100.00 100.00 96.97 98.44 NA 100.00 100.00 96.67 NA 96.43 100.00 100.00 95.65 100.00 96.77 97.06 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 97.73 100.00 100.00 100.00 98.28 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 K intron_retention CG9526 chr2L + chr2L_6457490_6457539 chr2L_6457489_6457490;chr2L_6457539_6457540 chr2L_6457338_6457489;chr2L_6457540_6457916 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.48 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.97 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17233,I_chr3L_20232803_20232962,RI_chr3L_20232898_20232962 chr3L - chr3L_20231011_20231837 chr3L_20231010_20231011;chr3L_20231837_20231838 chr3L_20229534_20231010;chr3L_20231838_20232644 0.00 0.00 0.00 0.00 5.88 0.00 4.00 0.00 5.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor kar,I_chr3R_8510258_8513437,I_chr3R_8513840_8514930,I_chr3R_8514177_8514930 chr3R - chr3R_8513844_8514930 chr3R_8513844_8513900 chr3R_8513500_8513843;chr3R_8514931_8515030 50.00 NA NA 66.67 NA NA 66.67 NA 20.00 75.00 NA 100.00 100.00 NA NA 66.67 NA NA NA 33.33 NA 71.43 33.33 20.00 NA NA 33.33 NA NA NA NA NA 50.00 NA 100.00 25.00 25.00 16.67 33.33 33.33 NA 50.00 NA NA NA 50.00 NA 66.67 NA NA NA NA NA NA NA NA NA NA K intron_retention torp4a chrX - chrX_4542904_4542974 chrX_4542903_4542904;chrX_4542974_4542975 chrX_4542672_4542903;chrX_4542975_4543547 100.00 99.23 100.00 100.00 100.00 100.00 99.26 100.00 99.51 100.00 100.00 99.49 99.01 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.96 98.72 100.00 100.00 100.00 100.00 100.00 100.00 99.07 100.00 100.00 98.88 100.00 100.00 99.02 100.00 100.00 99.51 100.00 99.03 100.00 99.46 99.38 98.94 99.41 100.00 100.00 99.42 99.70 99.60 K intron_retention dor,hfw chrX + chrX_1561859_1561920 chrX_1561858_1561859;chrX_1561920_1561921 chrX_1561707_1561858;chrX_1561921_1562493 0.00 0.00 0.00 0.00 0.00 0.00 2.27 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 3.12 6.52 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Tfb1 chr2R + chr2R_10250627_10250756 chr2R_10250627_10250749 chr2R_10250565_10250626;chr2R_10250757_10251018 90.35 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.00 NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG12004 chr3L + chr3L_1573765_1574987 chr3L_1573765_1573993 chr3L_1573680_1573764;chr3L_1574988_1576330 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor RpL5,I_chr2L_22427822_22428348,psnoRNA:RpL5-a,F_chr2L_22428392_22428525,I_chr2L_22428750_22428846 chr2L - chr2L_22427796_22428348 chr2L_22427822_22428348 chr2L_22428349_22428391;chr2L_22427722_22427795 0.01 0.01 0.01 0.02 0.00 0.01 0.01 0.02 0.02 0.04 0.01 0.01 0.03 0.01 0.01 0.01 0.01 0.02 0.01 0.02 0.01 0.02 0.02 0.01 0.01 0.02 0.01 0.16 0.02 0.01 0.02 0.02 0.01 0.01 0.00 0.02 0.01 0.01 0.01 0.01 0.01 0.02 0.01 0.02 0.02 0.02 0.02 0.00 0.03 0.02 0.03 0.02 0.01 0.01 0.02 0.02 0.01 0.01 K intron_retention sec31,I_chr2R_4783150_4783708 chr2R + chr2R_4785679_4785755 chr2R_4785678_4785679;chr2R_4785755_4785756 chr2R_4785377_4785678;chr2R_4785756_4785827 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor glo,I_chr3R_7644679_7644739,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7644683_7644880;chr3R_7644683_7644739;chr3R_7644683_7644908;chr3R_7644683_7644743 chr3R_7644683_7644932 chr3R_7644583_7644682;chr3R_7644933_7644980 91.36 93.94 91.80 85.19 86.96 93.62 75.00 88.64 91.51 100.00 83.33 91.96 85.42 90.74 87.69 93.70 88.00 NA 87.10 92.46 93.55 86.03 92.17 88.46 90.20 80.43 93.07 95.40 80.77 93.40 86.42 93.90 88.64 87.62 95.16 97.47 91.53 93.33 90.77 93.08 89.09 88.39 87.50 95.88 87.27 92.86 93.44 92.37 87.31 94.74 90.41 90.48 96.43 93.10 85.71 91.76 91.21 95.00 K intron_retention CG30193,CG30190,noncoding_8782 chr2R + chr2R_18818690_18819037 chr2R_18818689_18818690;chr2R_18819037_18819038 chr2R_18818567_18818689;chr2R_18819038_18819238 55.56 NA NA NA NA NA 55.56 NA 73.33 NA NA 66.67 NA NA NA NA NA NA NA 46.15 NA 65.38 80.00 NA NA NA 53.85 NA 63.64 NA 41.67 54.55 70.59 NA NA 37.04 46.15 NA NA 47.83 61.11 46.15 NA NA 47.06 61.11 41.67 65.00 80.00 36.84 45.45 NA NA 75.00 NA NA NA 73.33 K jcn_only_AD cbs,I_chr2R_9340506_9340593,I_chr2R_9340512_9340593 chr2R + chr2R_9340536_9340593;chr2R_9340512_9340593 chr2R_9340506_9340593 chr2R_9340594_9340693;chr2R_9340412_9340505 4.60 1.85 6.00 3.49 5.71 0.00 4.80 5.00 3.85 0.00 8.57 2.33 9.76 3.57 6.90 5.68 4.76 13.95 3.03 4.67 2.94 NA 4.17 2.22 6.78 5.41 3.23 3.23 9.30 5.56 6.52 0.00 1.96 3.45 10.00 3.57 1.89 6.12 4.48 1.43 6.58 3.74 7.69 4.84 7.55 4.60 1.85 3.57 2.47 5.32 2.25 8.16 NA 3.17 6.41 10.11 8.33 4.17 K intron_retention CG7841,RI_chr3L_15499446_15500898,I_chr3L_15500695_15500898,RI_chr3L_15500713_15500898 chr3L - chr3L_15500667_15500898 chr3L_15500666_15500667;chr3L_15500898_15500899 chr3L_15500613_15500666;chr3L_15500899_15500998 13.33 NA NA NA NA NA 19.05 15.00 26.32 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA 12.50 16.67 NA 12.50 NA 5.56 21.43 NA NA 16.67 NA NA NA NA 14.29 6.67 13.33 13.33 NA 5.56 9.68 NA 5.00 NA 5.56 NA 14.29 21.05 NA 14.29 12.50 NA NA 25.00 NA NA NA K intron_retention LanB1 chr2L + chr2L_7811773_7814575 chr2L_7811772_7811773;chr2L_7814575_7814576 chr2L_7811459_7811772;chr2L_7814576_7814643 0.00 0.00 0.00 1.39 2.22 0.00 0.73 0.00 0.68 0.00 0.00 0.00 0.00 1.64 0.00 0.64 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor B52,F_chr3R_9488762_9491174,E_chr3R_9488770_9491174 chr3R + chr3R_9488127_9488691 chr3R_9488127_9488676 chr3R_9488019_9488126;chr3R_9488692_9488761 0.44 0.44 0.00 0.00 0.00 0.57 0.47 0.00 0.37 0.79 0.00 0.28 2.70 0.70 0.44 0.00 0.00 0.46 1.23 0.42 0.62 0.43 1.19 0.00 1.05 0.56 2.11 1.95 0.26 0.30 1.95 0.00 0.44 0.75 0.38 0.75 0.72 0.68 1.09 0.70 0.24 0.57 0.00 1.06 0.29 0.41 0.00 0.23 0.00 0.40 1.52 1.31 0.00 0.68 0.46 0.81 0.47 0.33 K intron_retention mbc,I_chr3R_19615584_19615649,I_chr3R_19625220_19625288 chr3R + chr3R_19625373_19625589 chr3R_19625372_19625373;chr3R_19625589_19625590 chr3R_19625289_19625372;chr3R_19625590_19625680 9.26 8.89 11.90 7.00 0.00 4.65 8.93 7.48 7.84 10.71 7.41 8.33 8.51 9.26 4.48 4.23 9.52 5.26 8.00 6.00 11.54 14.58 10.34 11.59 20.00 4.08 9.23 3.85 13.79 17.14 4.17 26.32 21.05 6.60 14.29 13.33 10.61 10.81 12.24 14.75 9.09 7.14 10.81 7.04 11.76 15.69 8.77 16.67 8.05 8.06 11.43 11.11 13.89 5.77 8.93 10.45 11.76 30.77 K intron_retention Idh,I_chr3L_8351006_8351949,I_chr3L_8351036_8351655 chr3L - chr3L_8351006_8351655 chr3L_8351005_8351006;chr3L_8351655_8351656 chr3L_8350936_8351005;chr3L_8351656_8351715 4.76 4.76 8.70 6.90 0.00 4.17 13.33 4.76 6.15 15.00 0.00 8.33 5.00 5.88 6.45 4.35 NA 0.00 0.00 2.99 0.00 20.83 6.67 4.88 5.13 3.85 6.98 17.65 4.55 0.00 NA 9.09 7.69 2.78 10.00 13.16 0.00 0.00 4.26 9.68 0.00 5.26 0.00 0.00 0.00 16.67 0.00 0.00 4.88 0.00 6.98 0.00 9.68 2.63 3.45 6.67 0.00 3.23 K cassette Asator chr4 - chr4_495731_497917 chr4_495731_497588;chr4_497729_497917 chr4_497589_497728 chr4_495702_495730;chr4_497918_497940 85.71 NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG4825,RI_chr3L_20516382_20516451 chr3L - chr3L_20516382_20516451 chr3L_20516385_20516451 chr3L_20516452_20516551;chr3L_20516303_20516381 95.65 95.24 90.00 93.75 100.00 100.00 95.65 84.21 97.22 100.00 88.89 96.55 90.91 92.86 92.86 94.12 100.00 90.91 100.00 95.24 91.67 93.75 100.00 96.15 93.33 91.67 94.74 93.33 100.00 100.00 100.00 100.00 94.12 90.48 90.00 100.00 95.45 95.00 100.00 96.77 93.75 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 96.00 92.86 100.00 94.44 95.24 100.00 92.31 100.00 K alternative_last_exon l(3)82Fd,I_chr3R_1122358_1125191,I_chr3R_1131693_1133665,I_chr3R_1147660_1148709 chr3R - chr3R_1122358_1125191 chr3R_1124212_1125191 chr3R_1121869_1122357 chr3R_1123920_1124211 chr3R_1125192_1125291 98.53 98.11 97.73 96.55 97.67 97.37 97.56 98.21 100.00 100.00 97.14 98.86 97.14 96.97 100.00 100.00 100.00 100.00 100.00 98.78 97.50 96.15 98.25 98.41 100.00 97.62 95.12 100.00 100.00 97.92 97.37 100.00 100.00 98.41 100.00 98.04 100.00 100.00 98.53 100.00 100.00 99.07 94.29 100.00 100.00 100.00 95.45 100.00 98.81 97.92 98.04 100.00 96.00 96.77 97.83 96.55 100.00 100.00 K intron_retention I_chr3R_16141663_16144698,CG5077,I_chr3R_16147605_16147670 chr3R + chr3R_16144008_16144698 chr3R_16144007_16144008;chr3R_16144698_16144699 chr3R_16143815_16144007;chr3R_16144699_16144743 85.19 72.73 88.89 81.82 NA 87.50 90.91 77.78 78.95 NA NA 85.71 91.67 92.31 84.62 84.21 90.91 NA 76.92 77.78 NA 90.91 75.00 92.31 NA 78.57 71.43 NA 60.00 90.00 NA NA 63.64 86.36 88.89 90.91 90.00 90.00 NA 71.43 NA 92.86 75.00 72.73 NA 71.43 NA NA 85.19 90.91 92.86 NA NA NA NA 83.33 77.78 100.00 N intron_retention Tsp42Ed chr2R - chr2R_2897868_2897936 chr2R_2897867_2897868;chr2R_2897936_2897937 chr2R_2897838_2897867;chr2R_2897937_2898098 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 65.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 K intron_retention CG3635,I_chr2L_22179420_22179486 chr2L + chr2L_22175603_22179486 chr2L_22175602_22175603;chr2L_22179486_22179487 chr2L_22175591_22175602;chr2L_22179487_22179566 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 91.67 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 100.00 K intron_retention CG3091,I_chrX_2147635_2147990 chrX - chrX_2147432_2147483 chrX_2147431_2147432;chrX_2147483_2147484 chrX_2147350_2147431;chrX_2147484_2147634 0.00 0.00 0.00 2.27 0.00 0.00 0.00 2.20 1.96 NA 0.00 9.26 0.00 5.26 3.85 0.00 2.94 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 4.17 NA 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 2.08 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention Nmda1,R_chr2R_8766216_8766562,I_chr2R_8766652_8766956,I_chr2R_8766728_8766791,I_chr2R_8766728_8767623 chr2R - chr2R_8766652_8766956 chr2R_8766651_8766652;chr2R_8766956_8766957 chr2R_8766628_8766651;chr2R_8766957_8766983 72.38 NA 66.67 NA NA NA 90.91 88.89 68.75 NA NA 71.43 NA 80.00 63.64 75.00 NA NA NA 52.94 NA NA 60.00 NA NA NA 90.91 94.74 92.86 NA 58.33 NA NA 73.33 NA NA 60.00 NA NA 90.00 NA NA NA 66.67 NA NA NA NA 73.33 NA NA NA NA NA 58.33 NA NA NA K alternative_acceptor egr,I_chr2R_5970832_5970930,I_chr2R_5970999_5971058 chr2R + chr2R_5970832_5970930;chr2R_5970832_5970908 chr2R_5970832_5970926 chr2R_5970767_5970831;chr2R_5970931_5970998 26.14 29.80 24.79 20.45 27.43 29.75 20.59 23.30 25.21 31.25 30.77 26.60 23.68 24.76 25.68 22.55 28.87 23.81 24.79 24.31 24.55 29.81 26.73 28.57 23.71 21.30 34.44 20.00 27.52 25.89 23.08 24.05 23.33 23.46 26.23 35.04 33.15 30.08 28.19 28.97 20.43 26.89 27.96 26.09 28.57 25.98 26.49 24.74 22.97 32.68 28.80 27.68 29.24 29.05 20.55 26.14 28.26 25.60 K intron_retention pnr,RI_chr3R_11852561_11855192 chr3R + chr3R_11864921_11864991 chr3R_11864920_11864921;chr3R_11864991_11864992 chr3R_11864309_11864920;chr3R_11864992_11865268 20.75 21.79 16.13 21.62 20.75 20.00 22.95 19.74 20.00 18.75 23.91 20.21 31.43 30.95 25.93 16.95 30.77 20.00 21.74 16.67 22.00 14.75 25.32 22.22 26.67 18.75 30.77 43.84 20.59 22.77 21.43 18.33 16.28 17.20 22.22 19.35 22.88 16.44 23.77 18.37 29.55 19.27 28.95 18.99 12.05 28.57 30.99 12.33 15.45 21.18 22.67 20.00 18.57 14.06 21.43 17.98 25.30 10.59 K alternative_acceptor sqh,I_chrX_6118043_6119039,I_chrX_6118150_6118725,I_chrX_6118150_6118729,I_chrX_6118150_6118790,I_chrX_6118150_6118800 chrX - chrX_6118043_6119039 chrX_6118150_6119039 chrX_6119040_6119139;chrX_6117943_6118042 99.86 100.00 100.00 100.00 99.73 99.76 99.83 99.84 99.90 99.63 100.00 99.88 99.71 99.72 99.53 100.00 99.67 100.00 99.77 99.90 99.71 99.12 99.87 99.86 100.00 100.00 99.86 100.00 100.00 100.00 99.79 100.00 99.77 99.85 99.78 99.82 99.88 99.69 100.00 99.89 100.00 99.79 100.00 100.00 100.00 99.86 99.84 99.67 99.89 99.88 99.84 99.77 99.82 99.84 99.79 99.84 99.88 100.00 K jcn_only_AD CG13923,CG12022 chr3L + chr3L_1803324_1803432 chr3L_1803328_1803432 chr3L_1803433_1803567;chr3L_1803322_1803323 100.00 100.00 NA 100.00 NA 100.00 96.77 100.00 98.04 NA NA 97.50 NA 100.00 95.45 NA NA NA 100.00 96.88 NA NA 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.59 95.83 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 97.96 NA 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 97.44 100.00 98.18 K cassette CG32638,I_chrX_13017877_13022283 chrX - chrX_13017721_13020100 chrX_13017721_13017806;chrX_13017877_13020100 chrX_13017807_13017876 chrX_13017225_13017720;chrX_13020101_13020247 99.39 97.22 99.00 100.00 97.75 98.82 98.26 99.39 100.00 100.00 100.00 99.32 100.00 100.00 99.12 100.00 98.84 100.00 100.00 98.99 100.00 100.00 99.24 99.17 100.00 100.00 100.00 100.00 98.00 98.68 98.08 98.15 100.00 100.00 98.61 94.34 99.24 98.91 100.00 100.00 100.00 99.51 100.00 100.00 100.00 100.00 98.02 100.00 98.96 99.15 98.98 100.00 99.14 98.63 100.00 97.96 96.21 99.05 K cassette CG9795,RI_chr3R_149612_150058 chr3R + chr3R_149887_150309 chr3R_149887_150058;chr3R_150233_150309 chr3R_150059_150232 chr3R_149675_149886;chr3R_150310_150390 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 K intron_retention capt,I_chr2L_1156009_1158078,I_chr2L_1153732_1157370,I_chr2L_1163632_1163759 chr2L - chr2L_1152701_1152770 chr2L_1152700_1152701;chr2L_1152770_1152771 chr2L_1152177_1152700;chr2L_1152771_1153318 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.18 0.00 0.00 0.48 0.31 0.56 0.00 0.26 0.37 0.00 0.24 0.00 0.00 0.28 0.20 0.19 0.13 0.27 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.39 K jcn_only_AD CG3829,I_chr2R_20874677_20875710,I_chr2R_20874711_20875717,I_chr2R_20875172_20875710,I_chr2R_20875497_20875710 chr2R + chr2R_20875497_20875710;chr2R_20875172_20875710;chr2R_20874711_20875710 chr2R_20875350_20875710 chr2R_20875711_20875810;chr2R_20874611_20874710 69.23 NA 76.92 76.47 60.00 78.12 69.23 80.95 73.53 NA 64.00 64.58 72.41 87.88 76.47 83.33 77.42 65.85 80.00 70.45 76.19 52.94 NA NA NA 69.23 NA NA 45.45 NA 50.00 NA NA 79.41 NA NA NA NA NA 48.15 NA 64.58 60.00 NA NA 22.73 NA 27.27 70.21 NA NA NA NA NA 60.71 NA NA 40.00 K intron_retention CG1792,pasha chr3R + chr3R_27442244_27442296 chr3R_27442243_27442244;chr3R_27442296_27442297 chr3R_27442056_27442243;chr3R_27442297_27442994 21.67 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA 26.67 NA NA NA 15.38 NA NA NA NA NA NA NA NA NA 38.46 42.86 NA NA NA NA NA NA NA K alternative_acceptor CAP-D2,E_chr3R_25501928_25504637 chr3R + chr3R_25501579_25501620;chr3R_25501579_25501655 chr3R_25501579_25501909 chr3R_25501398_25501578;chr3R_25501910_25501927 0.00 0.00 0.00 1.82 0.00 0.00 2.86 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 1.30 3.85 0.00 1.72 0.00 0.00 0.00 0.00 0.00 2.86 0.00 7.41 0.00 2.00 1.96 0.00 0.00 1.72 0.00 0.00 1.79 5.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Flo-2 chrX + chrX_14818447_14824779;chrX_14818447_14820798;chrX_14818447_14819678 chrX_14818447_14820768 chrX_14818259_14818446 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 2.22 0.00 0.00 0.00 NA 0.00 1.92 0.00 0.00 1.12 0.00 2.56 2.22 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4406 chrX - chrX_1902102_1902161 chrX_1902101_1902102;chrX_1902161_1902162 chrX_1901871_1902101;chrX_1902162_1902322 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 4.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG17002 chr2R + chr2R_2875194_2875291 chr2R_2875194_2875285 chr2R_2875175_2875193;chr2R_2875292_2875770 98.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 97.14 NA NA NA NA NA NA NA NA NA NA 96.88 NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RpS3A,I_chr4_87364_87465,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87533_87769 chr4_87532_87533;chr4_87769_87770 chr4_87466_87532;chr4_87770_87817 99.97 99.97 99.98 99.96 99.92 99.98 99.97 99.96 99.95 100.00 99.97 99.98 99.98 100.00 99.98 99.94 100.00 99.97 99.97 99.94 99.97 99.96 99.96 99.96 99.95 99.98 100.00 99.95 100.00 99.86 99.98 99.85 99.96 99.97 99.95 100.00 100.00 99.93 99.97 99.95 100.00 99.99 99.97 100.00 99.85 99.93 99.94 99.91 99.99 99.92 100.00 100.00 99.96 100.00 99.95 100.00 99.95 99.83 K alternative_acceptor tral,I_chr3L_12512171_12512251 chr3L + chr3L_12510160_12510527 chr3L_12510160_12510515 chr3L_12509677_12510159;chr3L_12510528_12511057 8.08 7.02 5.11 18.75 8.33 7.37 8.21 9.15 6.46 11.02 6.19 5.90 8.08 8.70 6.92 10.00 7.95 9.28 8.08 7.69 8.08 15.26 11.54 7.77 16.67 15.22 8.38 15.38 12.57 8.72 7.69 11.57 10.03 5.79 9.55 51.16 12.06 6.88 8.94 8.75 6.90 5.99 5.88 7.82 12.23 7.47 7.80 7.46 5.51 9.50 7.25 10.11 7.23 7.41 7.03 8.86 4.97 6.73 K alternative_acceptor CG6115 chr2L - chr2L_16887672_16887792 chr2L_16887678_16887792 chr2L_16887793_16887941;chr2L_16887122_16887671 99.26 99.16 99.26 99.34 98.72 99.20 97.14 99.37 98.47 100.00 98.65 98.95 98.59 100.00 99.26 99.35 100.00 99.09 100.00 98.24 99.00 98.73 98.94 100.00 100.00 99.12 99.28 96.74 97.40 100.00 99.44 100.00 100.00 99.39 100.00 100.00 98.57 99.18 100.00 100.00 100.00 99.49 98.89 98.20 98.94 99.34 98.82 98.15 99.08 99.20 99.46 98.95 99.28 99.49 100.00 100.00 99.23 98.88 K jcn_only_AA Hlc chrX - chrX_21257309_21257376 chrX_21257319_21257376 chrX_21257377_21257805;chrX_21256593_21257308 100.00 100.00 100.00 100.00 100.00 100.00 99.62 100.00 99.68 100.00 99.12 100.00 100.00 100.00 100.00 99.18 99.18 100.00 99.43 99.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.90 99.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.15 99.61 100.00 99.13 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.91 98.04 100.00 99.25 K alternative_donor noncoding_18164,F_chr3R_17192061_17200781,RI_chr3R_17193489_17193631 chr3R + chr3R_17193416_17193631;chr3R_17193407_17193631 chr3R_17193489_17193631 chr3R_17193632_17193731;chr3R_17193389_17193406 14.91 8.33 17.65 14.81 14.29 21.43 8.33 19.05 15.00 NA NA 11.54 21.43 26.67 8.33 13.04 14.29 20.00 7.14 18.52 9.09 NA 10.00 0.00 NA 15.38 25.00 0.00 14.29 NA 7.02 25.00 16.67 19.05 10.00 10.00 12.50 28.57 9.09 16.00 15.38 19.23 16.67 7.69 27.78 20.83 18.18 20.00 15.38 5.56 14.29 22.22 0.00 20.00 13.33 12.50 8.33 19.23 K alternative_acceptor cwo,noncoding_15870 chr3R + chr3R_6222543_6223088 chr3R_6222543_6223084 chr3R_6222454_6222542;chr3R_6223089_6223406 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 97.37 100.00 100.00 100.00 90.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K intron_retention l(1)G0222,I_chrX_17473084_17473137 chrX - chrX_17466685_17466742 chrX_17466684_17466685;chrX_17466742_17466743 chrX_17466553_17466684;chrX_17466743_17466876 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17471,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1217104_1217383 chr4_1217103_1217104;chr4_1217383_1217384 chr4_1217009_1217103;chr4_1217384_1217398 34.52 NA NA 50.00 NA NA 43.33 39.39 32.35 NA NA 28.57 26.67 NA NA 38.46 NA NA 35.71 28.57 NA NA NA NA NA NA NA NA NA NA 23.08 NA NA 50.00 NA NA NA NA NA NA NA 30.00 36.36 NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,RI_chr3R_27801288_27801517,I_chr3R_27801288_27801596 chr3R - chr3R_27784850_27805244 chr3R_27784850_27795477;chr3R_27795508_27798223;chr3R_27798276_27801169;chr3R_27801288_27801517;chr3R_27801688_27805244 chr3R_27795478_27795507;chr3R_27798224_27798275;chr3R_27801170_27801287;chr3R_27801518_27801687 chr3R_27784757_27784849;chr3R_27805245_27805341 56.35 66.67 75.00 87.50 NA 40.00 16.67 45.45 50.00 NA 66.67 77.78 66.67 50.00 60.00 55.56 NA 50.00 50.00 57.14 50.00 NA NA NA NA 40.00 25.00 NA NA NA 75.00 NA 40.00 71.43 NA NA NA NA 66.67 50.00 NA 44.44 66.67 NA NA 100.00 NA 60.00 55.56 NA 66.67 NA NA NA 50.00 NA NA 60.00 K intron_retention APP-BP1 chr3L + chr3L_11093488_11093546 chr3L_11093487_11093488;chr3L_11093546_11093547 chr3L_11093239_11093487;chr3L_11093547_11093705 0.00 0.00 0.00 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention srp,R_chr3R_11824572_11825047,I_chr3R_11826508_11826910 chr3R + chr3R_11821447_11825047 chr3R_11821446_11821447;chr3R_11825047_11825048 chr3R_11819864_11821446;chr3R_11825048_11825147 0.80 0.00 0.00 2.27 0.00 1.06 0.00 1.71 1.39 0.83 3.16 2.54 0.00 3.66 2.94 2.02 0.00 2.50 1.04 1.45 0.00 0.39 0.89 0.62 1.61 0.00 1.49 1.00 1.29 0.74 3.45 0.00 0.00 2.45 1.21 0.90 0.84 0.74 0.47 0.00 0.00 0.76 0.00 0.00 1.30 0.00 0.95 0.00 2.54 0.80 0.64 1.63 0.00 0.00 0.87 0.00 0.38 0.00 K cassette RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12922514_12924321 chr2R_12922514_12922850;chr2R_12923913_12924321 chr2R_12922851_12923912 chr2R_12922340_12922513;chr2R_12924322_12924406 99.19 98.70 100.00 99.26 98.46 97.14 98.18 99.19 99.47 98.39 97.56 100.00 97.22 98.70 98.77 100.00 98.51 100.00 100.00 99.36 100.00 98.90 99.28 100.00 98.59 97.50 100.00 100.00 100.00 100.00 100.00 100.00 98.74 97.73 97.65 100.00 98.60 98.72 99.17 99.42 100.00 100.00 100.00 97.44 100.00 100.00 97.92 99.38 98.65 98.53 98.21 98.44 100.00 100.00 98.92 100.00 97.30 98.73 K cassette CG6043,I_chr2L_13267973_13268086 chr2L + chr2L_13274851_13275587 chr2L_13274851_13274989;chr2L_13275062_13275587 chr2L_13274990_13275061 chr2L_13274691_13274850;chr2L_13275588_13275628 3.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA K jcn_only_AA CG5872,RI_chr3L_20430213_20430346,RI_chr3L_20430213_20430358 chr3L + chr3L_20430213_20430346;chr3L_20430213_20430358 chr3L_20430213_20430353 chr3L_20430113_20430212;chr3L_20430359_20430446 75.31 NA NA NA NA NA NA NA 68.18 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA 61.90 NA NA NA NA NA NA NA NA 76.19 NA NA NA 71.43 NA 76.92 80.95 NA NA NA NA NA NA NA NA 75.61 K jcn_only_AD alpha-Adaptin,I_chr2L_413655_413722 chr2L - chr2L_413655_414442 chr2L_413655_413722 chr2L_413555_413654;chr2L_414443_414852 8.52 14.29 3.77 5.81 5.41 14.29 13.58 10.26 12.28 NA 6.00 4.62 25.00 18.92 11.11 25.00 2.17 7.41 6.00 12.50 2.56 NA 6.52 2.44 8.70 5.77 12.20 NA 6.06 7.69 14.29 NA 6.56 7.41 12.12 15.38 12.50 13.51 9.09 7.69 0.00 8.33 10.64 11.43 5.00 2.13 NA 4.65 8.97 NA 12.24 6.45 13.64 NA 6.78 29.17 14.63 4.76 K intron_retention CG9691 chrX + chrX_9778902_9778970 chrX_9778901_9778902;chrX_9778970_9778971 chrX_9778475_9778901;chrX_9778971_9779079 43.16 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 55.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA N alternative_acceptor CG2201 chr2L - chr2L_21618111_21623365 chr2L_21623130_21623365 chr2L_21623366_21623540;chr2L_21618011_21618110 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA 0.00 NA 0.00 NA N alternative_donor CG1494 chrX + chrX_21159081_21159147;chrX_21158242_21159147 chrX_21159059_21159147 chrX_21159148_21159527;chrX_21157788_21158241 1.47 1.85 1.47 1.23 1.85 1.85 0.99 0.96 0.67 2.04 2.00 0.89 1.64 1.59 1.32 1.11 1.64 1.67 1.35 0.00 1.75 1.64 1.02 1.43 1.89 1.41 1.28 2.44 2.33 0.00 1.02 0.00 6.94 0.93 2.13 1.96 1.15 1.75 1.32 1.16 0.00 0.75 1.96 1.59 0.00 2.08 2.50 0.00 0.81 2.70 1.19 1.96 2.86 4.00 1.19 2.78 2.78 0.00 K mutually_exclusive Nopp140,I_chr3L_21828330_21828566,I_chr3L_21828986_21829082 chr3L + chr3L_21827930_21828566,chr3L_21828986_21829082 chr3L_21827930_21828173,chr3L_21828330_21829082 chr3L_21828567_21828985 chr3L_21828174_21828329 chr3L_21827465_21827929;chr3L_21829083_21829182 19.20 23.02 19.59 20.98 13.79 19.39 25.00 21.37 16.59 13.30 22.86 16.67 20.97 24.32 16.26 20.51 16.00 19.23 17.65 24.73 16.47 4.98 23.04 19.19 24.39 20.48 31.93 20.17 11.29 14.65 18.18 11.64 10.69 20.00 16.67 22.29 21.28 17.14 19.13 13.12 15.75 16.67 16.85 14.55 15.19 16.67 25.32 10.06 20.18 19.74 21.88 23.08 19.20 26.05 17.50 22.07 30.93 14.45 K intron_retention CG5484 chr3R + chr3R_22543734_22544049 chr3R_22543733_22543734;chr3R_22544049_22544050 chr3R_22543570_22543733;chr3R_22544050_22544588 87.09 87.50 NA NA NA NA NA NA NA NA NA 91.67 NA NA NA 77.78 NA NA NA 92.31 NA 96.77 92.31 80.00 80.00 NA 90.00 80.00 90.00 NA 92.31 NA 100.00 NA NA NA 69.23 70.00 NA 86.67 NA 90.00 NA 88.89 81.82 70.00 NA 100.00 81.82 77.78 80.00 NA NA NA NA NA NA NA K jcn_only_AA fal,I_chr3L_19289660_19290145 chr3L + chr3L_19291320_19291381 chr3L_19291320_19291377 chr3L_19290619_19291319;chr3L_19291382_19291573 98.12 100.00 97.14 100.00 95.83 96.30 98.00 95.16 96.43 100.00 96.88 100.00 97.73 100.00 100.00 98.25 100.00 100.00 100.00 98.80 100.00 100.00 97.73 100.00 94.12 100.00 93.18 NA NA NA 98.41 100.00 NA 97.01 100.00 NA 100.00 100.00 93.94 100.00 95.65 94.52 93.55 93.94 NA 96.77 100.00 100.00 98.63 96.43 100.00 93.02 NA 97.73 93.88 97.62 96.88 92.86 K intron_retention opa1-like,I_chr2R_10119470_10120234,I_chr2R_10121848_10121900,I_chr2R_10122128_10122197,I_chr2R_10122334_10122393 chr2R - chr2R_10119470_10120229 chr2R_10119469_10119470;chr2R_10120229_10120230 chr2R_10119370_10119469;chr2R_10120230_10120408 7.58 7.58 7.27 8.08 7.81 13.04 7.95 8.24 6.21 8.33 7.50 8.57 9.52 10.64 9.46 9.09 5.77 2.94 11.94 7.63 3.92 9.21 8.91 7.29 4.62 3.57 7.46 12.00 7.81 7.02 4.71 11.63 5.77 10.20 4.26 4.17 5.31 8.06 8.51 31.71 3.57 6.30 6.25 6.74 0.00 6.35 6.90 12.50 8.20 6.06 10.31 5.56 11.63 6.82 5.26 5.97 9.33 7.69 K intron_retention RpL22,noncoding_21234 chrX - chrX_658557_658628 chrX_658556_658557;chrX_658628_658629 chrX_658335_658556;chrX_658629_658775 99.84 99.83 99.86 99.90 100.00 99.70 99.82 99.88 99.41 100.00 99.82 99.77 99.80 99.38 99.68 100.00 99.80 99.51 100.00 99.69 99.82 99.57 99.93 99.94 99.68 99.83 100.00 100.00 100.00 99.86 100.00 99.84 99.86 99.90 99.87 98.98 100.00 99.90 99.80 99.68 100.00 99.73 99.84 99.75 99.86 99.63 99.68 99.83 99.71 99.91 99.91 99.83 99.59 99.93 99.87 99.91 99.81 99.89 K intron_retention SelR,I_chr3R_6692390_6692530,I_chr3R_6692461_6692530,I_chr3R_6694098_6694160 chr3R - chr3R_6692416_6692530 chr3R_6692415_6692416;chr3R_6692530_6692531 chr3R_6692361_6692415;chr3R_6692531_6692630 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Flo,I_chr2R_11456012_11456623 chr2R - chr2R_11456332_11456623 chr2R_11456331_11456332;chr2R_11456623_11456624 chr2R_11456256_11456331;chr2R_11456624_11456723 1.32 0.00 0.00 0.00 0.00 1.61 0.00 2.70 3.41 0.00 3.64 4.03 3.92 4.08 0.00 2.02 3.33 0.00 2.74 2.94 0.00 1.32 0.00 0.00 5.26 5.26 3.03 0.00 3.70 2.94 3.85 0.00 2.50 0.83 0.00 5.13 0.00 0.00 0.00 5.06 3.12 1.29 1.75 1.41 0.00 0.00 0.00 10.71 1.32 2.22 0.00 0.00 0.00 0.00 2.20 0.00 1.03 4.17 K jcn_only_AD Gp150,I_chr2R_18205316_18205386,RI_chr2R_18206133_18212679,I_chr2R_18211853_18212679,RI_chr2R_18212600_18212679,I_chr2R_18213233_18213308 chr2R + chr2R_18205243_18212679 chr2R_18205460_18212679 chr2R_18212680_18212779;chr2R_18205216_18205242 99.81 100.00 99.41 99.50 100.00 99.24 98.94 100.00 99.36 100.00 98.75 99.47 100.00 100.00 98.52 99.78 99.51 99.11 99.38 99.83 99.06 99.19 99.72 99.47 99.37 99.72 100.00 99.12 98.36 100.00 99.70 100.00 100.00 100.00 100.00 100.00 99.56 99.05 99.47 100.00 100.00 99.81 100.00 100.00 100.00 100.00 100.00 100.00 99.34 100.00 100.00 100.00 100.00 100.00 99.72 99.14 98.90 100.00 K intron_retention G-salpha60A chr2R + chr2R_19833785_19833960 chr2R_19833784_19833785;chr2R_19833960_19833961 chr2R_19833660_19833784;chr2R_19833961_19833967 0.00 NA NA 0.00 NA NA 4.17 3.33 0.00 NA 0.00 15.38 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 10.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 5.88 NA 0.00 3.23 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 NA 5.88 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 8.00 K alternative_acceptor Doa,I_chr3R_24715823_24718923,I_chr3R_24747391_24747896 chr3R + chr3R_24746992_24747080 chr3R_24746992_24747062 chr3R_24746878_24746991;chr3R_24747081_24747146 6.00 6.00 4.26 5.35 5.69 6.03 4.31 5.16 6.93 5.05 7.07 5.13 5.21 5.15 6.01 6.28 7.50 4.29 6.25 3.50 7.14 8.38 4.60 6.06 5.71 8.50 7.07 7.69 8.57 3.70 5.81 6.67 9.17 4.12 4.08 7.14 7.14 2.53 5.45 6.31 6.25 5.78 7.84 4.49 6.62 6.25 4.60 4.35 6.51 8.11 4.49 2.31 4.81 5.03 4.92 6.04 7.69 6.61 K alternative_acceptor Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911803_5913333;chr2R_5911755_5913333 chr2R_5911708_5913333 chr2R_5913334_5913352;chr2R_5911703_5911707 40.59 72.73 45.45 33.33 20.00 33.33 35.71 45.00 30.30 57.14 53.85 23.08 14.29 16.67 40.00 41.18 50.00 16.67 50.00 38.89 41.67 50.00 50.00 NA NA 14.29 25.00 NA NA 50.00 47.37 NA NA 35.29 50.00 14.29 61.54 NA 25.00 50.00 NA 42.86 36.36 53.85 NA NA NA 40.00 34.78 NA 50.00 42.86 NA NA 35.71 NA NA NA K jcn_only_AD Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11838972_11839458;chr2R_11838972_11839411 chr2R_11838972_11839376 chr2R_11838888_11838971;chr2R_11839459_11839486 100.00 NA NA NA NA NA NA NA 96.43 NA NA 88.00 NA NA 100.00 NA NA NA NA 92.86 NA 93.33 94.59 100.00 NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 NA NA NA NA 96.43 NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA K intron_retention U2af50,I_chrX_16252240_16252638 chrX - chrX_16251251_16251327 chrX_16251250_16251251;chrX_16251327_16251328 chrX_16250711_16251250;chrX_16251328_16251450 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.41 0.00 0.00 0.53 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD cul-2,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21661637_21662083 chr2L_21662021_21662083 chr2L_21662084_21662183;chr2L_21661537_21661636 2.48 1.89 5.17 4.17 0.00 0.00 3.59 2.53 0.57 7.14 2.44 4.10 22.22 1.56 4.17 3.73 1.59 0.00 0.00 2.40 0.00 5.00 0.70 2.94 3.57 1.67 2.48 3.81 4.76 5.19 0.00 3.92 1.22 0.77 4.17 1.23 7.69 0.00 8.33 8.14 1.11 3.54 1.82 1.89 3.12 5.38 5.77 1.08 3.64 6.58 4.40 1.59 0.00 2.27 1.59 3.39 0.00 0.00 K alternative_donor CG17233,RI_chr3L_20232898_20232962 chr3L - chr3L_20231011_20232962 chr3L_20231011_20231837 chr3L_20229534_20231010;chr3L_20232963_20233016 88.57 83.33 88.57 88.10 89.29 86.67 83.78 80.43 87.32 70.00 87.50 87.10 74.07 88.00 97.06 90.32 95.83 96.67 90.48 89.29 95.24 76.67 89.55 81.82 87.50 92.31 85.71 69.23 78.38 82.61 92.31 93.55 87.50 82.69 86.84 92.68 91.36 93.62 90.41 82.35 79.41 93.85 91.67 94.12 92.00 83.72 90.91 90.38 89.66 91.49 89.66 87.10 90.91 87.80 87.18 94.44 94.87 80.70 K alternative_donor alpha-Man-I,I_chrX_10218352_10219759,I_chrX_10218390_10219759 chrX - chrX_10218390_10219816;chrX_10218390_10219823;chrX_10218390_10219708;chrX_10218390_10219846 chrX_10218390_10219759 chrX_10218290_10218389;chrX_10219847_10219859 22.65 20.00 NA 25.00 NA 28.57 33.33 25.00 23.08 NA 16.67 26.67 22.22 14.29 22.22 25.00 33.33 14.29 16.67 30.00 NA 20.00 0.00 16.67 NA 42.86 42.86 NA NA 33.33 20.00 NA 40.00 36.36 20.00 25.00 NA NA 16.67 25.00 NA 22.22 28.57 NA NA 16.67 NA 20.00 30.77 NA 50.00 20.00 20.00 NA 22.22 NA 25.00 16.67 K intron_retention B52,E_chr3R_9488770_9491174 chr3R + chr3R_9487155_9487227 chr3R_9487154_9487155;chr3R_9487227_9487228 chr3R_9487148_9487154;chr3R_9487228_9487314 55.00 NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA 50.00 NA 35.29 NA NA NA NA NA NA 75.00 NA NA NA 72.73 NA NA 66.67 NA NA NA 33.33 50.00 70.00 NA NA NA 36.36 NA 61.11 72.73 NA NA NA NA 50.00 NA NA NA 44.44 K intron_retention SmG chrX - chrX_16534064_16534128 chrX_16534063_16534064;chrX_16534128_16534129 chrX_16533995_16534063;chrX_16534129_16534194 90.00 NA NA 90.00 NA 88.89 92.86 76.92 88.89 NA NA 80.00 NA NA 87.50 100.00 NA NA NA 78.95 NA NA 91.67 85.71 94.44 93.75 100.00 90.00 100.00 75.00 NA 71.43 90.00 90.00 90.91 91.67 NA NA 87.50 86.67 97.06 90.91 NA NA 88.89 80.77 88.89 50.00 91.67 78.57 100.00 90.00 94.44 94.44 NA 90.91 93.33 84.62 N jcn_only_AA CG11200 chr2R - chr2R_16194142_16196065 chr2R_16196005_16196065 chr2R_16196066_16196078 11.77 NA 0.00 5.13 NA NA NA 5.56 15.62 NA NA 12.24 23.81 17.24 5.00 14.29 NA NA 11.11 13.21 NA NA NA 7.41 NA 13.16 4.00 NA NA NA 4.76 NA NA 6.25 NA NA NA NA 15.00 12.00 NA 12.50 NA NA NA 14.81 NA 3.33 8.51 9.68 11.54 14.29 NA NA 20.69 15.38 NA 10.00 N alternative_donor kat80,I_chrX_16162233_16162306,I_chrX_16168725_16169287 chrX - chrX_16168725_16169565;chrX_16168725_16169287 chrX_16168725_16169347 chrX_16168625_16168724;chrX_16169566_16169786 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 5.26 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K alternative_acceptor Cp190,I_chr3R_11100788_11100846,F_chr3R_11104164_11104239 chr3R - chr3R_11100788_11100846;chr3R_11100334_11100846 chr3R_11100321_11100846 chr3R_11100847_11100931;chr3R_11099837_11100320 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 K jcn_only_AA Tsp97E chr3R - chr3R_22789207_22790364 chr3R_22790008_22790364 chr3R_22790365_22790433 100.00 100.00 100.00 98.33 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA K intron_retention I_chr3L_17833072_17833135,CG5567 chr3L - chr3L_17835658_17836374 chr3L_17835657_17835658;chr3L_17836374_17836375 chr3L_17835458_17835657;chr3L_17836375_17836617 4.09 6.45 0.00 0.00 8.70 0.00 5.71 5.13 5.26 0.00 0.00 3.92 0.00 0.00 0.00 9.09 0.00 4.35 10.00 1.89 0.00 10.53 4.26 0.00 NA 8.00 7.69 6.67 0.00 0.00 9.52 0.00 0.00 5.41 11.76 3.45 0.00 0.00 2.94 0.00 0.00 8.00 0.00 0.00 0.00 6.67 12.50 0.00 3.92 16.67 5.26 4.35 6.67 6.67 9.09 13.04 12.20 5.88 K alternative_acceptor CG11006,F_chr3L_12799159_12799339 chr3L + chr3L_12799438_12799952;chr3L_12799438_12800192;chr3L_12799438_12799955;chr3L_12799438_12799967 chr3L_12799438_12800078 chr3L_12799340_12799437;chr3L_12800193_12800930 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 NA 14.58 6.67 0.00 0.00 NA NA 7.14 0.00 0.00 NA NA 1.72 NA 0.00 0.00 8.33 0.00 3.85 4.08 0.00 0.00 NA 0.00 3.23 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 K intron_retention CG1407,RI_chr2R_5918952_5919093 chr2R - chr2R_5919631_5919718 chr2R_5919630_5919631;chr2R_5919718_5919719 chr2R_5919524_5919630;chr2R_5919719_5919840 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 1.97 1.28 0.00 4.60 2.44 2.53 3.33 0.00 0.00 2.27 0.00 0.00 0.00 0.00 2.04 0.00 1.20 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RhoGAP92B chr3R + chr3R_15731610_15734155 chr3R_15731609_15731610;chr3R_15734155_15734156 chr3R_15731353_15731609;chr3R_15734156_15734331 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 1.72 0.00 3.36 0.53 0.00 0.00 0.00 0.00 1.20 0.00 1.01 0.00 0.00 0.00 0.00 1.30 0.93 0.00 0.00 1.06 0.00 0.00 2.20 0.00 1.69 0.00 1.22 0.00 0.00 0.64 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 K intron_retention 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5993331_5993793 chr2R_5993330_5993331;chr2R_5993793_5993794 chr2R_5993231_5993330;chr2R_5993794_5993825 15.45 4.32 6.00 18.49 9.23 11.54 15.52 14.89 10.00 NA 7.50 17.98 19.15 14.55 10.42 17.53 11.59 5.56 11.39 28.00 5.13 15.38 33.33 30.00 9.68 2.25 55.00 50.00 37.50 50.00 14.29 46.15 42.11 9.63 40.00 38.46 42.86 3.42 33.33 28.26 22.73 10.78 13.21 5.41 26.32 32.00 25.93 46.67 9.92 18.52 12.07 11.86 26.67 11.43 11.94 3.70 18.75 30.30 K intron_retention CG15547,I_chr3R_26712627_26714606,RI_chr3R_26713323_26714382 chr3R - chr3R_26708794_26708849 chr3R_26708793_26708794;chr3R_26708849_26708850 chr3R_26708734_26708793;chr3R_26708850_26709639 18.65 20.00 10.87 28.57 29.17 31.03 13.43 24.07 14.86 21.88 20.83 7.84 18.42 9.52 30.77 23.33 28.95 19.23 17.39 24.00 7.14 18.87 19.51 9.09 31.58 NA 40.91 50.00 12.50 21.43 12.26 29.87 21.21 14.67 25.93 24.14 12.50 20.00 7.69 8.33 17.31 12.79 21.05 9.09 8.33 17.50 7.27 21.05 19.67 17.78 20.59 5.88 6.90 14.29 22.45 16.67 13.33 8.97 K intron_retention Pgi,I_chr2R_4801076_4801329 chr2R - chr2R_4801076_4801214 chr2R_4801075_4801076;chr2R_4801214_4801215 chr2R_4800976_4801075;chr2R_4801215_4801631 99.00 98.92 98.55 100.00 94.00 98.59 100.00 97.73 99.26 98.77 100.00 100.00 100.00 98.25 98.88 98.41 100.00 98.44 100.00 98.31 100.00 96.19 99.36 99.27 99.00 100.00 99.24 95.70 100.00 100.00 100.00 98.59 96.49 98.94 98.97 93.69 99.17 99.02 100.00 98.20 97.14 97.89 100.00 99.04 97.75 99.13 98.94 98.29 99.06 99.24 99.29 98.80 98.39 98.97 100.00 98.91 100.00 100.00 K alternative_acceptor l(2)05714,I_chr2L_4970785_4973718,RI_chr2L_4971343_4973718,CG8892 chr2L - chr2L_4971323_4973718 chr2L_4971454_4973718 chr2L_4973719_4973787;chr2L_4971243_4971322 91.67 57.14 70.00 100.00 NA NA 100.00 92.31 77.78 NA NA 100.00 100.00 100.00 85.71 94.12 NA 85.71 100.00 92.86 87.50 100.00 90.00 87.50 83.33 87.50 88.89 100.00 NA 80.00 91.67 NA NA 78.57 87.50 NA 100.00 100.00 100.00 80.00 NA 90.00 100.00 66.67 NA 100.00 100.00 NA 94.12 100.00 83.33 80.00 100.00 87.50 87.50 90.91 100.00 100.00 K alternative_acceptor CG5703 chrX + chrX_17526494_17526622 chrX_17526494_17526601 chrX_17526344_17526493;chrX_17526623_17527141 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.62 0.00 1.92 0.00 0.00 0.00 0.79 0.00 0.00 1.47 1.37 0.48 0.00 0.00 0.00 0.00 1.19 0.00 1.89 0.00 3.03 0.00 1.27 1.41 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 1.41 0.00 0.00 0.00 0.00 1.45 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 K intron_retention Arc-p34 chr2L + chr2L_20420413_20420489 chr2L_20420412_20420413;chr2L_20420489_20420490 chr2L_20420319_20420412;chr2L_20420490_20420589 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3071298_3073080;chr3L_3071190_3073080 chr3L_3071308_3073080 chr3L_3073081_3073149;chr3L_3071183_3071189 21.43 NA NA NA NA NA NA 26.92 NA NA NA 40.91 NA NA NA 8.11 NA NA NA 5.13 NA NA NA NA NA NA NA NA NA NA NA NA NA 21.43 NA NA NA NA NA NA NA 23.81 NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA K intron_retention CG4287,CG32856,mor chr3R - chr3R_11789268_11789320 chr3R_11789267_11789268;chr3R_11789320_11789321 chr3R_11787896_11789267;chr3R_11789321_11789576 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 2.44 0.00 3.85 10.00 16.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.90 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.45 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention betaggt-I,I_chr2L_4946222_4946668 chr2L + chr2L_4945682_4945901 chr2L_4945681_4945682;chr2L_4945901_4945902 chr2L_4945582_4945681;chr2L_4945902_4946013 0.00 0.00 0.00 1.67 0.00 0.00 0.00 5.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 1.89 0.00 2.00 0.00 0.00 0.00 0.00 9.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 8.33 0.85 1.75 7.69 0.00 10.53 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 2.94 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG6782,CG6783 chr3R - chr3R_7390834_7392639 chr3R_7390833_7390834;chr3R_7392639_7392640 chr3R_7390506_7390833;chr3R_7392640_7392746 63.64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 63.64 NA NA 64.71 53.85 NA NA NA NA NA 66.67 16.67 NA NA NA NA NA 63.64 NA NA 76.92 NA NA NA 46.67 NA 61.54 88.89 NA NA 58.33 71.43 NA NA NA NA NA NA NA K intron_retention SCAP,CG14591 chr2R - chr2R_1919787_1919851 chr2R_1919786_1919787;chr2R_1919851_1919852 chr2R_1919603_1919786;chr2R_1919852_1920226 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9006273_9007675 chrX_9006273_9006782;chrX_9006801_9007675 chrX_9006783_9006800 chrX_9006196_9006272;chrX_9007676_9007775 2.44 1.59 0.00 3.33 5.36 3.45 0.97 0.00 1.76 1.92 1.61 5.21 3.51 1.82 1.64 2.70 1.96 0.00 3.03 1.69 3.39 4.67 2.86 4.40 0.00 0.00 1.28 3.23 1.82 1.33 3.12 3.57 3.64 1.12 4.65 3.64 1.38 2.20 2.17 2.50 2.22 3.54 1.75 2.35 3.57 5.00 4.00 2.22 1.00 5.17 4.21 5.66 3.23 2.44 3.90 1.79 1.82 4.35 K intron_retention Tsp97E chr3R - chr3R_22789243_22789839 chr3R_22789242_22789243;chr3R_22789839_22789840 chr3R_22788880_22789242;chr3R_22789840_22790007 0.76 4.84 3.39 2.80 0.00 0.00 1.03 1.98 0.76 0.00 0.00 0.00 0.00 0.00 2.35 1.47 0.00 0.00 3.33 0.63 0.00 3.85 4.26 0.00 0.00 0.00 9.28 11.76 2.30 0.00 3.61 2.11 0.00 2.33 0.00 1.23 2.33 0.00 2.50 1.49 2.04 3.57 0.00 0.00 1.00 2.38 0.00 0.00 4.46 0.00 5.06 0.00 0.00 0.00 1.32 3.33 0.00 0.00 K alternative_donor Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21124522_21125316 chr2L_21124615_21125316 chr2L_21125317_21125329;chr2L_21124443_21124521 4.76 4.55 0.00 15.79 0.00 NA 11.76 12.00 6.98 NA 20.00 1.64 13.64 4.35 0.00 0.00 6.67 NA 3.45 2.70 NA 8.33 4.17 5.56 5.56 7.41 9.09 9.09 0.00 4.76 0.00 NA 0.00 0.00 NA 7.41 4.76 0.00 3.57 8.00 NA 2.70 NA 6.67 8.33 7.69 0.00 0.00 6.25 NA 0.00 NA NA NA 5.88 NA NA NA K intron_retention stc chr2L + chr2L_15117492_15117553 chr2L_15117491_15117492;chr2L_15117553_15117554 chr2L_15117140_15117491;chr2L_15117554_15117669 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.53 0.00 0.00 1.06 2.10 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753;chr2R_2814327_2817753 chr2R_2814327_2816013,chr2R_2813804_2816013;chr2R_2816342_2817753 chr2R_2816014_2816341 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 99.03 100.00 99.26 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 99.32 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.10 100.00 100.00 100.00 100.00 K intron_retention Rab14,I_chr2L_14357104_14357340 chr2L + chr2L_14357701_14357754 chr2L_14357700_14357701;chr2L_14357754_14357755 chr2L_14357632_14357700;chr2L_14357755_14357843 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 2.04 4.72 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 K intron_retention I_chrX_16266436_16268958,Fur2,I_chrX_16267221_16268573,I_chrX_16267868_16268958,RI_chrX_16267905_16268958,I_chrX_16270205_16270272,I_chrX_16274795_16274867 chrX + chrX_16267208_16268958 chrX_16267207_16267208;chrX_16268958_16268959 chrX_16267150_16267207;chrX_16268959_16269058 39.89 NA NA NA NA NA 33.33 23.08 30.43 NA NA 46.15 NA NA NA 41.67 NA NA NA 45.00 NA 38.10 NA NA NA NA NA NA NA NA NA NA NA 31.25 NA NA NA NA NA NA NA 53.33 NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA K alternative_donor CG34413,RI_chr2R_20769295_20770153,I_chr2R_20771136_20772048,I_chr2R_20773500_20774745 chr2R + chr2R_20769150_20770153;chr2R_20769206_20770153;chr2R_20769295_20770153 chr2R_20769471_20770153 chr2R_20770154_20770253;chr2R_20769141_20769149 6.67 3.17 4.41 7.14 3.49 4.49 11.39 11.54 6.21 6.52 3.39 6.59 3.64 5.97 4.71 15.09 3.70 7.81 6.35 7.00 4.76 41.07 10.53 4.82 5.45 5.80 17.19 7.50 15.38 12.90 5.06 25.00 22.86 5.88 11.54 26.09 4.46 6.67 3.85 7.96 16.67 4.68 3.51 6.25 7.41 8.70 3.70 9.68 6.16 6.67 15.09 3.92 7.69 6.67 3.85 8.11 7.69 16.67 K intron_retention Roc1a chrX + chrX_541559_541642 chrX_541558_541559;chrX_541642_541643 chrX_541253_541558;chrX_541643_541670 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 2.27 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17399683_17403392;chr2R_17399683_17403481;chr2R_17399683_17401713 chr2R_17399683_17401733 chr2R_17399598_17399682;chr2R_17403482_17403550 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon CG32521,I_chrX_21077138_21082106,I_chrX_21077612_21082713,EI_chrX_21080561_21082106,I_chrX_21080906_21082713,CREF_chrX_21082827_21152068,EF_chrX_21094675_21152068 chrX - chrX_21080561_21082106;chrX_21077612_21082106 chrX_21080906_21082106 chrX_21076245_21077611 chrX_21080124_21080905 chrX_21082107_21082206 7.72 7.51 10.30 2.06 7.69 6.19 19.59 4.42 8.02 6.99 9.82 11.55 2.63 8.72 8.16 7.47 6.06 18.66 7.51 5.61 17.24 8.87 9.26 10.18 7.59 4.62 7.72 21.45 12.77 8.40 6.44 5.85 6.86 8.96 9.36 7.51 10.81 12.50 10.39 8.97 3.99 8.09 7.69 9.83 7.09 4.81 3.77 9.13 8.09 5.54 8.09 10.05 6.34 4.11 10.25 5.90 5.30 4.80 K intron_retention wapl,Cyp4d1 chrX - chrX_2045496_2045555 chrX_2045495_2045496;chrX_2045555_2045556 chrX_2045305_2045495;chrX_2045556_2045644 4.00 0.00 0.00 0.00 10.00 8.70 0.00 8.00 10.81 NA NA 11.76 4.76 5.88 7.41 4.35 6.67 0.00 0.00 4.44 6.67 4.76 3.57 4.35 0.00 0.00 0.00 5.00 6.67 4.35 0.00 0.00 10.00 10.34 14.29 4.76 8.11 0.00 6.67 9.38 0.00 0.00 0.00 0.00 0.00 4.88 0.00 4.00 4.65 3.33 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 K jcn_only_AD gpp,I_chr3R_2271795_2272181 chr3R + chr3R_2232800_2233199 chr3R_2232814_2233199 chr3R_2233200_2233496;chr3R_2232745_2232799 93.22 NA NA 89.58 NA NA 96.67 96.15 91.46 NA NA 91.43 97.62 100.00 NA 91.18 87.50 NA 93.55 92.31 NA 95.24 94.44 NA NA NA 84.00 NA NA 96.30 NA NA 89.66 95.56 NA 90.91 NA NA NA 97.30 NA 94.00 88.46 NA NA NA NA 97.14 93.22 NA 92.59 95.00 NA NA 92.59 NA NA 90.91 K alternative_donor Orc2 chr3R + chr3R_9791304_9791371 chr3R_9791308_9791371 chr3R_9791372_9792217;chr3R_9790714_9791303 0.00 0.00 0.00 4.55 0.00 0.00 5.00 0.00 2.94 NA 0.00 3.23 NA 0.00 3.23 0.00 0.00 3.70 0.00 0.00 0.00 NA 3.85 5.56 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.45 3.33 NA 4.17 0.00 0.00 3.57 4.55 NA 0.00 2.56 4.17 0.00 0.00 0.00 NA 3.03 0.00 0.00 0.00 K intron_retention CG9945,CG16742 chr2R + chr2R_16508050_16508112 chr2R_16508049_16508050;chr2R_16508112_16508113 chr2R_16507943_16508049;chr2R_16508113_16508255 0.00 2.78 0.00 7.69 NA 0.00 4.76 0.00 7.27 5.56 9.09 0.00 0.00 0.00 3.45 6.67 0.00 0.00 0.00 6.45 0.00 0.00 0.00 0.00 0.00 0.00 6.67 7.32 7.27 0.00 0.00 2.63 4.17 3.85 0.00 0.00 4.76 0.00 2.56 0.00 0.00 0.00 0.00 1.89 6.06 11.36 0.00 0.00 5.71 4.35 0.00 0.00 0.00 0.00 8.00 0.00 13.51 0.00 K jcn_only_AA CG17665 chr2R - chr2R_123842_123917 chr2R_123868_123917 chr2R_123918_124062;chr2R_123742_123841 96.00 92.31 96.15 94.37 100.00 95.65 94.37 93.65 96.43 NA 96.00 98.08 97.37 100.00 95.00 96.36 97.56 88.89 92.45 97.96 100.00 95.83 97.67 90.32 96.88 100.00 92.50 96.67 NA 100.00 98.00 NA NA 98.51 100.00 92.86 98.04 96.00 95.65 98.15 100.00 89.55 96.30 97.78 NA 94.44 93.18 NA 92.98 90.24 86.00 100.00 92.00 92.31 93.33 95.83 89.29 100.00 K cassette Liprin-alpha chr2L + chr2L_6724085_6724826 chr2L_6724085_6724177;chr2L_6724394_6724826 chr2L_6724178_6724393 chr2L_6723995_6724084;chr2L_6724827_6725096 8.82 9.68 7.41 11.11 NA 13.64 16.00 7.41 9.43 2.38 11.11 7.89 18.18 8.70 13.64 9.09 18.18 6.67 10.53 6.52 NA 19.05 5.56 6.25 12.50 15.00 19.05 13.04 9.52 12.90 15.00 6.25 6.15 7.32 3.85 8.82 10.29 9.09 6.12 5.97 6.67 7.41 NA 12.00 8.70 4.35 11.76 3.75 7.32 NA 10.81 8.33 18.18 7.69 9.52 7.69 8.33 3.45 K jcn_only_AA Src42A chr2R + chr2R_1898274_1898445 chr2R_1898274_1898436 chr2R_1898115_1898273;chr2R_1898446_1898614 84.09 83.72 80.68 87.03 79.37 89.41 65.31 85.33 89.35 90.38 80.00 83.80 76.32 84.42 89.42 85.44 79.55 86.42 79.12 83.49 83.33 81.48 88.39 88.30 75.00 83.76 78.31 100.00 84.09 87.88 84.44 72.34 87.50 89.51 77.59 88.71 83.91 90.32 80.65 83.65 83.72 83.59 85.90 82.76 90.74 90.48 85.39 98.04 82.96 88.75 86.67 87.50 79.63 81.25 81.13 84.93 83.61 86.44 K intron_retention Pak,RI_chr3R_2181143_2181934 chr3R + chr3R_2179973_2180635 chr3R_2179972_2179973;chr3R_2180635_2180636 chr3R_2179830_2179972;chr3R_2180636_2180902 40.06 NA NA 46.15 NA NA NA NA 64.29 NA NA 46.67 NA NA NA 30.77 NA NA NA 35.71 NA 43.48 50.00 35.71 NA NA NA 38.46 NA NA NA NA 35.71 60.00 45.45 70.00 NA NA NA NA NA 36.84 NA 25.00 NA NA NA NA 41.67 NA 60.00 NA 16.67 NA NA NA 25.00 13.33 K alternative_last_exon Bet3,Nf-YA chr3L - chr3L_9432661_9435223 chr3L_9435067_9435223 chr3L_9432250_9432660 chr3L_9433156_9435066 chr3L_9435224_9435352 53.73 50.94 50.65 53.40 50.75 45.83 46.75 47.83 54.61 59.52 80.85 49.26 42.42 56.86 54.43 65.62 49.09 62.50 56.60 44.44 70.00 73.73 55.22 56.14 39.29 34.29 40.91 66.22 73.33 59.55 50.75 52.56 75.19 53.12 55.56 47.06 56.71 56.88 54.05 58.82 52.17 50.32 58.70 56.25 66.37 58.65 50.50 68.18 53.73 46.84 48.18 57.89 53.19 48.91 48.65 53.85 44.80 53.66 N intron_retention CG7777,I_chr2R_7323928_7328572 chr2R + chr2R_7327836_7329439 chr2R_7327835_7327836;chr2R_7329439_7329440 chr2R_7327692_7327835;chr2R_7329440_7329695 6.67 NA NA 0.00 NA NA 6.67 NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Shawn_Tyler,MKP-4 chrX + chrX_19517388_19517449 chrX_19517387_19517388;chrX_19517449_19517450 chrX_19517138_19517387;chrX_19517450_19517581 0.00 0.00 0.00 3.57 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 2.13 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 1.89 0.00 0.00 4.55 0.00 0.00 0.00 0.00 N alternative_donor Lag1,RI_chrX_6153758_6153930,I_chrX_6153758_6155077,RI_chrX_6153758_6161036,I_chrX_6160907_6161036 chrX - chrX_6153758_6155077;chrX_6153758_6154631;chrX_6153758_6153930;chrX_6153758_6161036;chrX_6153758_6154193;chrX_6153758_6154358 chrX_6153758_6160439 chrX_6153658_6153757;chrX_6161037_6161136 86.54 84.49 87.08 87.25 85.96 85.94 88.18 87.74 88.18 86.54 85.92 87.47 88.58 87.92 87.34 86.29 88.27 87.21 87.34 86.64 89.50 83.76 88.34 86.98 85.42 84.46 85.29 80.69 76.47 87.69 84.33 80.63 86.30 88.06 86.92 87.10 84.74 83.26 81.52 87.16 83.62 86.67 87.69 87.26 76.47 82.03 81.56 87.50 88.84 82.77 88.18 86.47 82.14 77.53 87.60 79.43 75.93 84.10 K alternative_acceptor CG31600 chr2L - chr2L_21914952_21915015 chr2L_21914967_21915015 chr2L_21915016_21915168;chr2L_21914802_21914951 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG10289,I_chr3L_6163043_6163216 chr3L - chr3L_6163028_6163216 chr3L_6163043_6163216 chr3L_6163217_6163316;chr3L_6162943_6163027 0.00 1.37 0.00 0.79 0.00 0.00 0.90 0.00 1.23 0.00 0.00 0.00 0.00 0.00 1.37 0.00 1.56 0.00 0.00 0.00 0.00 0.00 1.11 1.32 0.00 0.00 2.04 4.17 0.00 0.00 2.35 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 1.46 0.00 1.80 0.00 1.19 1.32 0.00 2.70 0.00 0.00 0.00 0.00 0.00 2.15 0.00 1.59 0.00 K jcn_only_AD Nedd4,I_chr3L_17526753_17527450,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17526749_17527450;chr3L_17526950_17527450 chr3L_17526753_17527450 chr3L_17527451_17527550;chr3L_17526708_17526748 12.50 NA 12.50 3.70 NA 38.10 18.52 17.65 17.65 NA NA 23.08 4.35 NA 4.76 9.68 NA 14.81 7.41 7.69 13.64 NA 12.20 NA 19.44 10.71 28.57 NA 35.00 NA 20.00 NA NA 13.51 NA NA NA NA 12.50 NA NA 17.24 5.00 15.00 NA 8.33 NA 8.82 8.77 NA 7.41 12.00 NA NA 10.71 NA NA 13.04 K intron_retention CG15012 chr3L - chr3L_4291817_4291874 chr3L_4291816_4291817;chr3L_4291874_4291875 chr3L_4291687_4291816;chr3L_4291875_4291964 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 1.54 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.65 1.20 2.99 0.00 0.00 0.00 0.00 0.71 1.52 0.00 3.88 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 K alternative_donor CG41265,I_chr2RHet_569340_569401 chr2RHet + chr2RHet_565791_569401 chr2RHet_569340_569401 chr2RHet_569402_569411;chr2RHet_565675_565790 66.67 100.00 50.00 40.00 100.00 100.00 40.00 30.00 44.44 50.00 100.00 100.00 50.00 66.67 100.00 50.00 50.00 100.00 50.00 60.00 50.00 100.00 50.00 100.00 100.00 100.00 33.33 100.00 100.00 100.00 50.00 100.00 50.00 40.00 100.00 100.00 50.00 50.00 100.00 66.67 100.00 40.00 100.00 50.00 100.00 33.33 50.00 100.00 75.00 50.00 100.00 50.00 100.00 NA 66.67 50.00 50.00 100.00 K intron_retention I_chr2R_4783150_4783708,Ggamma1,noncoding_5300 chr2R + chr2R_4789783_4789847 chr2R_4789782_4789783;chr2R_4789847_4789848 chr2R_4789746_4789782;chr2R_4789848_4790635 98.20 98.09 97.40 99.52 98.99 97.33 97.31 95.70 98.50 100.00 97.37 96.45 99.35 99.27 98.20 98.91 98.88 99.03 97.67 98.52 96.30 97.56 100.00 99.11 97.70 99.36 98.84 98.28 98.92 98.67 98.16 97.92 99.13 96.91 99.01 100.00 96.85 98.08 98.86 96.92 98.90 97.84 99.03 95.21 98.29 98.03 96.50 98.65 96.88 97.25 96.89 98.63 99.07 98.71 97.45 96.95 97.89 97.06 N cassette aru,I_chr2L_864795_867505 chr2L - chr2L_864795_865826 chr2L_864795_864876;chr2L_865061_865826 chr2L_864877_865060 chr2L_864695_864794;chr2L_865827_865847 100.00 100.00 100.00 79.07 100.00 100.00 100.00 100.00 78.08 100.00 15.52 100.00 100.00 100.00 100.00 100.00 100.00 43.90 100.00 82.22 26.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 46.51 61.54 100.00 60.00 42.50 81.82 100.00 100.00 100.00 100.00 57.89 66.67 100.00 65.08 100.00 100.00 47.37 71.88 100.00 61.70 80.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 56.41 K intron_retention l(2)35Di,RI_chr2L_15750643_15750721 chr2L - chr2L_15750652_15750721 chr2L_15750651_15750652;chr2L_15750721_15750722 chr2L_15750550_15750651;chr2L_15750722_15750821 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 0.66 0.00 0.00 1.69 2.41 1.30 0.00 0.00 1.35 1.22 1.47 1.38 0.00 7.55 1.19 6.57 6.06 2.04 0.00 3.81 0.00 0.85 1.50 0.00 1.19 0.00 0.00 0.00 0.00 5.88 1.16 0.00 0.00 0.00 0.97 0.00 0.00 1.36 0.79 0.00 0.00 0.81 0.61 0.00 0.60 0.52 0.63 K alternative_donor SD23414,CG9132,I_chrX_16693612_16694097,I_chrX_16693612_16694529,CG9125,I_chrX_16696492_16696589 chrX - chrX_16693612_16694097;chrX_16693612_16694558 chrX_16693612_16696171 chrX_16693512_16693611;chrX_16696172_16696233 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Syb chr2R - chr2R_6137333_6138383 chr2R_6137333_6137873;chr2R_6138092_6138383 chr2R_6137874_6138091 chr2R_6137005_6137332;chr2R_6138384_6138649 6.03 5.88 7.34 34.58 4.31 3.97 3.11 13.22 6.78 5.33 26.48 5.48 14.05 7.34 7.08 14.23 7.92 9.70 9.22 6.88 21.72 3.79 5.68 5.26 4.82 6.99 6.46 10.66 3.88 5.66 8.93 6.93 7.31 8.73 6.03 2.56 4.38 3.00 4.25 6.51 5.73 5.95 8.23 5.47 6.66 8.28 3.89 11.87 5.69 5.54 6.35 5.70 2.20 4.49 6.91 4.58 2.67 5.03 K jcn_only_AD Mct1 chrX + chrX_2089073_2092664;chrX_2088826_2092664 chrX_2089096_2092664 chrX_2092665_2092972;chrX_2088634_2088825 3.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.33 NA NA NA 3.57 0.00 NA NA NA NA NA 0.00 NA NA NA 2.27 NA NA NA NA NA NA 8.70 NA K jcn_only_AD CG9588,omd chr3R - chr3R_9501459_9501552 chr3R_9501459_9501522 chr3R_9500847_9501458;chr3R_9501553_9501849 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 100.00 95.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 98.65 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Bub1 chr2L + chr2L_5280272_5280327 chr2L_5280271_5280272;chr2L_5280327_5280328 chr2L_5278956_5280271;chr2L_5280328_5281989 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 NA 22.50 15.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 K intron_retention CG42540,C_chr3L_4563905_4578759 chr3L + chr3L_4586784_4588068 chr3L_4586783_4586784;chr3L_4588068_4588069 chr3L_4586627_4586783;chr3L_4588069_4588097 21.88 NA NA 21.88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention eIF-4a,I_chr2L_5985221_5985289 chr2L + chr2L_5984625_5984718 chr2L_5984624_5984625;chr2L_5984718_5984719 chr2L_5984011_5984624;chr2L_5984719_5984942 0.00 0.00 0.00 0.01 0.00 0.00 0.02 0.04 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.04 0.00 0.00 0.00 0.00 0.03 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD Idgf2 chr2L + chr2L_16449744_16449802 chr2L_16449748_16449802 chr2L_16449803_16449871;chr2L_16449665_16449743 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4833364_4834454;chrX_4833234_4834454;chrX_4833203_4834454;chrX_4833308_4834454 chrX_4833338_4834454 chrX_4834455_4834880;chrX_4833197_4833202 11.11 16.67 0.00 6.67 20.00 NA 11.11 6.25 8.82 12.50 NA 6.67 27.27 22.22 0.00 25.00 18.18 0.00 14.29 15.00 NA 0.00 NA NA NA NA NA NA NA 11.11 27.27 NA 5.56 15.79 NA NA 0.00 NA NA 0.00 33.33 5.88 28.57 NA NA NA NA 25.00 5.56 NA NA NA NA NA 0.00 NA NA NA K alternative_donor Dp,I_chr2R_9111166_9112971,REI_chr2R_9113257_9113316 chr2R + chr2R_9112640_9112971;chr2R_9112663_9112971 chr2R_9112646_9112971 chr2R_9112972_9113071;chr2R_9112620_9112639 33.33 25.00 50.00 40.00 NA 33.33 NA NA 33.33 NA NA 44.44 NA NA 28.57 16.67 NA 44.44 NA 28.57 NA 10.53 40.00 41.18 25.00 43.75 23.53 20.00 NA 25.00 23.08 NA NA 20.00 NA NA 31.25 NA 42.11 38.46 28.57 35.71 NA 33.33 NA 25.00 33.33 NA 50.00 45.45 NA NA NA 33.33 NA NA 40.00 22.22 K intron_retention RI_chr2R_19244231_19244378,vir chr2R - chr2R_19249970_19250022 chr2R_19249969_19249970;chr2R_19250022_19250023 chr2R_19249273_19249969;chr2R_19250023_19252910 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 1.75 0.00 0.00 0.00 0.00 9.52 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG8798,I_chr3L_19602800_19602865 chr3L - chr3L_19602800_19602865 chr3L_19602810_19602865 chr3L_19602866_19602965;chr3L_19602700_19602799 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 95.45 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.59 96.67 93.33 100.00 93.75 100.00 100.00 96.00 97.22 100.00 100.00 92.86 100.00 100.00 95.00 94.44 100.00 100.00 N jcn_only_AD CG9339,RE_chr2L_20903555_20916904,I_chr2L_20903560_20918638,I_chr2L_20922613_20922685 chr2L - chr2L_20917121_20918093;chr2L_20917121_20918638 chr2L_20917121_20918798 chr2L_20916905_20917120;chr2L_20918799_20918888 65.31 NA NA 76.19 NA NA NA NA 55.56 NA NA 60.71 NA NA NA 87.10 NA NA 78.26 65.31 NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA 80.95 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 45.45 N intron_retention I_chrX_19573364_19573474,Mer,E_chrX_19584965_19587100,CG14229 chrX - chrX_19585968_19586333 chrX_19585967_19585968;chrX_19586333_19586334 chrX_19585731_19585967;chrX_19586334_19587282 36.36 NA 30.00 16.67 NA 31.82 47.83 46.43 45.16 100.00 26.67 35.29 31.58 NA 50.00 50.00 30.77 30.43 41.18 34.15 45.45 37.50 40.00 36.84 NA 37.50 40.00 46.15 35.29 21.43 44.12 33.33 15.56 29.17 31.25 NA 52.63 38.46 30.00 39.29 100.00 34.29 40.00 40.00 29.63 37.84 25.93 21.57 36.67 46.15 33.33 NA 20.00 35.29 27.78 36.36 36.84 12.96 K jcn_only_AD RpL12,I_chr2R_19948517_19948682 chr2R + chr2R_19947968_19948035 chr2R_19947973_19948035 chr2R_19948036_19948097;chr2R_19947923_19947967 48.47 51.85 55.42 50.00 60.87 66.20 69.51 57.14 69.75 17.65 49.48 58.65 56.58 55.07 54.84 49.07 48.98 51.85 56.76 53.23 62.50 26.67 NA 5.00 NA 50.43 28.00 11.11 22.58 27.59 50.00 39.13 30.43 63.04 30.00 16.67 48.00 NA NA 6.78 26.19 66.81 50.82 5.04 42.98 17.50 28.00 16.28 60.80 28.57 NA 18.52 28.00 NA 48.47 13.04 14.29 26.73 K jcn_only_AA Papss chr3L + chr3L_19838529_19838634;chr3L_19838529_19838611 chr3L_19838529_19838596 chr3L_19838397_19838528;chr3L_19838635_19838730 21.88 NA NA NA NA NA NA NA 26.92 NA NA 28.57 NA NA NA NA NA NA NA 21.88 NA NA 4.76 NA NA NA NA NA NA NA NA NA 8.33 30.43 NA NA NA NA NA NA NA 19.05 NA NA NA 26.09 NA NA 18.18 NA 25.00 NA NA NA NA NA NA 13.51 K alternative_donor Pten,I_chr2L_10256507_10256803,F_chr2L_10259663_10260253 chr2L - chr2L_10259691_10260853 chr2L_10259691_10260253 chr2L_10259476_10259690;chr2L_10260854_10260860 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 97.37 100.00 95.45 100.00 100.00 100.00 100.00 100.00 90.00 100.00 K alternative_last_exon CG8611,I_chrX_17309193_17309577 chrX - chrX_17309193_17313480 chrX_17309878_17313480 chrX_17309003_17309192 chrX_17309809_17309877 chrX_17313481_17313908 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA CG1092 chr3R + chr3R_92928_93014 chr3R_92928_92982 chr3R_92694_92927;chr3R_93015_94005 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention RI_chr3L_201061_201173,NitFhit,I_chr3L_212783_212843 chr3L + chr3L_203791_203843 chr3L_203790_203791;chr3L_203843_203844 chr3L_203699_203790;chr3L_203844_205311 21.91 25.00 24.24 24.14 18.75 20.00 27.50 28.26 36.00 NA 15.00 26.19 33.33 36.84 31.58 23.33 23.08 21.95 21.88 21.54 9.09 12.90 NA 41.67 NA 23.33 NA NA 19.05 11.76 28.00 15.38 9.09 28.85 NA 21.43 25.00 NA 31.58 6.25 15.38 13.73 16.67 6.67 2.04 15.15 30.77 10.81 20.97 NA NA NA NA NA 22.22 NA 33.33 3.77 K alternative_donor CG7231 chr2L + chr2L_7985442_7985552;chr2L_7985494_7985552 chr2L_7985434_7985552 chr2L_7985553_7985768;chr2L_7985425_7985433 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 70.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA 85.71 NA K intron_retention I_chr3R_261173_261244,CG14650,RI_chr3R_265878_265942 chr3R + chr3R_266046_266114 chr3R_266045_266046;chr3R_266114_266115 chr3R_265949_266045;chr3R_266115_266407 0.00 0.00 0.00 0.85 2.53 0.00 2.25 0.00 0.00 0.00 0.00 1.53 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.54 0.00 0.00 0.00 5.26 6.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.60 0.00 0.00 0.00 0.93 0.00 0.00 0.00 K alternative_acceptor CG1832,I_chr2L_22167179_22167302,I_chr2L_22168644_22168740 chr2L - chr2L_22167239_22167302 chr2L_22167254_22167302 chr2L_22167303_22167402;chr2L_22167050_22167238 15.52 18.75 10.66 17.68 10.38 15.29 15.85 16.67 14.10 11.67 16.67 16.13 11.81 16.49 12.71 14.60 15.96 11.76 12.93 18.50 15.62 15.25 17.21 15.79 21.21 9.01 17.89 33.33 13.51 13.58 15.29 15.52 16.13 16.23 16.90 17.14 18.56 12.77 18.95 15.00 11.01 15.14 14.89 14.29 17.74 14.12 18.39 15.19 18.00 14.71 20.17 12.16 14.29 15.71 11.63 18.18 14.58 17.32 K jcn_only_AA spz chr3R - chr3R_22892176_22892329 chr3R_22892203_22892329 chr3R_22892330_22892387;chr3R_22892041_22892175 69.35 64.24 71.52 81.75 68.49 68.82 82.16 70.81 71.39 65.40 69.52 70.88 67.13 69.25 66.50 70.58 71.27 71.84 69.35 71.52 68.16 58.49 60.76 65.56 73.35 79.72 53.49 58.97 81.17 73.72 69.06 73.40 78.00 71.68 69.09 61.44 68.15 66.04 64.66 70.82 78.71 74.43 74.52 70.10 61.11 69.38 58.31 72.36 72.80 59.06 62.83 71.94 60.36 63.58 68.23 66.99 51.28 70.44 K jcn_only_AD TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748981_19749882;chr2R_19748981_19750012;chr2R_19748981_19749783 chr2R_19748981_19749899 chr2R_19748884_19748980;chr2R_19750013_19750013 2.06 0.00 0.00 1.72 6.67 3.33 2.00 0.00 0.00 NA 0.00 1.33 0.00 5.26 4.88 5.45 5.88 3.57 1.92 2.78 0.00 3.57 2.22 3.33 11.54 0.00 5.41 NA 5.00 4.76 0.00 0.00 4.76 0.00 NA 0.00 0.00 7.69 2.13 4.44 4.00 1.43 0.00 5.88 NA 2.78 4.55 0.00 1.69 6.06 0.00 2.86 NA 0.00 2.86 0.00 0.00 0.00 K alternative_donor Mct1 chrX + chrX_2092973_2093852 chrX_2092977_2093852 chrX_2093853_2093972;chrX_2092665_2092972 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA 100.00 NA 88.89 100.00 88.89 NA 100.00 100.00 NA NA NA 87.50 NA 100.00 NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 100.00 K intron_retention I_chr2L_13965397_13965694,RI_chr2L_13967695_13967746,nimB4 chr2L - chr2L_13969461_13969618 chr2L_13969460_13969461;chr2L_13969618_13969619 chr2L_13968897_13969460;chr2L_13969619_13969964 6.47 8.00 6.90 6.56 9.23 7.69 5.63 13.51 6.38 NA 7.27 7.32 5.77 6.90 8.97 12.96 7.14 6.67 6.52 6.47 5.00 10.71 0.00 0.00 6.67 0.00 8.33 NA 0.00 0.00 8.82 3.12 0.00 9.76 4.00 0.00 1.61 3.70 5.66 6.52 0.00 7.03 8.51 0.00 0.00 5.71 10.00 0.00 5.26 3.37 8.00 0.00 3.08 3.12 12.00 5.00 7.03 10.00 K intron_retention nmdyn-D7 chr3R + chr3R_5506389_5506438 chr3R_5506388_5506389;chr3R_5506438_5506439 chr3R_5506221_5506388;chr3R_5506439_5507247 0.00 0.00 6.67 8.33 0.00 0.00 0.00 4.76 4.65 0.00 0.00 3.85 NA 0.00 0.00 4.17 0.00 0.00 0.00 0.00 5.56 0.00 0.00 3.70 9.52 0.00 21.05 NA NA NA 6.90 0.00 0.00 0.00 0.00 5.26 0.00 0.00 9.09 0.00 7.69 5.13 NA NA 0.00 0.00 2.94 0.00 2.78 4.76 0.00 0.00 0.00 0.00 0.00 3.70 3.70 8.70 K alternative_acceptor CG6643,I_chr3R_20370792_20375406,tRNA:D:96A chr3R + chr3R_20380856_20381189 chr3R_20380856_20381180 chr3R_20380424_20380855;chr3R_20381190_20381684 97.85 98.10 98.91 98.21 98.61 98.68 97.03 97.54 95.83 97.56 96.92 97.45 100.00 96.30 98.86 99.05 97.47 97.37 98.11 97.26 96.88 97.47 99.05 98.29 96.72 95.56 97.44 95.65 98.31 98.63 96.61 98.55 98.85 99.19 96.34 98.51 95.00 95.35 96.94 96.15 99.02 98.18 94.59 98.75 95.60 99.21 97.32 97.50 98.70 97.85 98.90 98.48 97.87 98.80 95.28 99.10 96.72 99.20 K alternative_acceptor Zn72D,RF_chr3L_16100887_16102721,I_chr3L_16105199_16105253 chr3L - chr3L_16104982_16105097 chr3L_16105015_16105097 chr3L_16105098_16105198;chr3L_16103583_16104981 0.00 0.00 2.50 2.17 0.00 2.33 0.00 0.00 3.77 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 5.00 1.06 5.56 1.64 1.10 0.00 2.56 0.00 2.27 0.00 4.88 0.00 1.37 0.00 2.70 0.00 0.00 0.00 1.27 2.00 0.00 1.41 0.00 1.67 0.00 2.78 4.35 2.00 2.22 0.00 4.11 2.38 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 K intron_retention Chc,I_chrX_15728946_15729357 chrX - chrX_15722683_15722748 chrX_15722682_15722683;chrX_15722748_15722749 chrX_15722596_15722682;chrX_15722749_15722915 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor uzip,I_chr2R_20916008_20916468 chr2R + chr2R_20899685_20900155;chr2R_20899701_20900155 chr2R_20899732_20900155 chr2R_20900156_20900229;chr2R_20899603_20899684 0.00 0.00 0.00 3.45 0.00 4.35 10.00 2.70 0.00 0.00 0.00 2.70 0.00 0.00 0.00 2.50 0.00 0.00 0.00 3.92 0.00 0.00 2.63 0.00 0.00 4.76 4.76 0.00 10.00 0.00 2.86 0.00 2.50 0.00 3.33 7.69 0.00 8.33 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 4.55 3.45 2.44 0.00 0.00 0.00 8.33 0.00 2.94 0.00 0.00 2.38 K alternative_acceptor rl,I_chr2RHet_199154_207044,RI_chr2RHet_203476_203577,RI_chr2RHet_203592_207044,I_chr2RHet_232696_247338,RI_chr2RHet_240197_247338 chr2RHet + chr2RHet_198817_198964;chr2RHet_198817_198981 chr2RHet_198817_198973 chr2RHet_198804_198816;chr2RHet_198982_199153 31.25 NA 22.22 31.25 20.00 44.44 38.64 36.11 14.29 NA NA 46.15 30.00 23.08 NA 29.03 28.57 22.22 23.53 30.43 33.33 NA 28.57 37.50 28.57 28.57 33.33 NA NA 44.44 54.55 NA NA 41.38 20.00 35.71 44.44 NA 36.36 NA NA 37.50 NA NA NA 33.33 55.56 NA 44.83 28.57 28.57 25.00 NA NA 44.44 NA NA 28.57 K intron_retention Tpr2 chr2L + chr2L_16505949_16506007 chr2L_16505948_16505949;chr2L_16506007_16506008 chr2L_16505496_16505948;chr2L_16506008_16506852 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette RhoGAP100F,F_chr3R_27658626_27659118,F_chr3R_27660019_27660096,F_chr3R_27662909_27663491 chr3R + chr3R_27662904_27665601 chr3R_27662904_27663495;chr3R_27663750_27665601 chr3R_27663496_27663749 chr3R_27662888_27662903;chr3R_27665602_27665718 85.41 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA 75.00 NA 75.00 83.33 100.00 NA NA 100.00 NA NA NA NA NA 80.00 NA 87.50 NA NA NA NA NA NA NA NA NA 80.00 K cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2814327_2816013;chr2R_2813804_2816013 chr2R_2814327_2814894,chr2R_2813804_2814894;chr2R_2815654_2816013 chr2R_2814895_2815653 chr2R_2813704_2813803;chr2R_2816014_2816113 14.29 16.07 15.38 22.41 13.04 12.90 16.67 8.33 12.94 9.76 16.00 19.44 11.76 15.15 10.26 21.88 13.16 12.00 14.29 15.86 18.18 12.20 16.36 20.88 26.09 14.29 14.29 26.09 17.86 16.67 9.68 14.29 19.05 16.95 13.24 22.64 16.18 15.71 18.52 13.18 11.43 12.94 16.67 8.57 14.02 9.17 10.29 13.59 12.16 10.34 11.84 8.93 10.00 12.50 14.29 11.90 15.56 11.39 K intron_retention chic,RI_chr2L_5976783_5980950,I_chr2L_5979705_5979818,I_chr2L_5979705_5979941,RI_chr2L_5979705_5979951,I_chr2L_5979705_5979953,I_chr2L_5979705_5980025,I_chr2L_5979705_5980213,I_chr2L_5979705_5980370,I_chr2L_5979705_5980558,I_chr2L_5979705_5980632,I_chr2L_5979705_5980639,RI_chr2L_5979705_5980734 chr2L - chr2L_5979705_5980952 chr2L_5979704_5979705;chr2L_5980952_5980953 chr2L_5979605_5979704;chr2L_5980953_5981025 5.56 0.00 0.00 13.56 8.00 0.00 0.00 3.23 7.59 NA 0.00 5.56 9.09 6.25 3.03 6.82 NA 13.79 6.06 4.55 0.00 6.25 NA 12.50 NA 15.00 NA 35.29 27.59 0.00 4.55 3.33 1.96 3.23 8.00 0.00 NA NA NA 13.33 2.44 9.23 3.33 17.39 4.00 4.88 NA 2.82 7.00 NA NA NA 6.67 NA 6.25 NA 13.64 2.78 K intron_retention Lig4 chrX - chrX_13561170_13561228 chrX_13561169_13561170;chrX_13561228_13561229 chrX_13560259_13561169;chrX_13561229_13561389 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 4.55 NA 0.00 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA 13.33 NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA 0.00 NA 3.85 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD CaMKII,I_chr4_1069766_1069812,I_chr4_1071236_1071307,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1071236_1071968;chr4_1071236_1071884;chr4_1071236_1071813;chr4_1071236_1072054 chr4_1071236_1071319 chr4_1071136_1071235;chr4_1072055_1072059 94.06 NA 93.55 78.65 NA NA 94.00 87.91 94.59 NA NA 94.12 96.15 97.62 96.67 93.16 95.65 NA 90.57 94.12 89.29 100.00 82.61 NA NA NA NA NA 90.91 100.00 86.89 96.15 100.00 86.59 NA 100.00 NA NA NA 93.75 97.14 86.67 92.31 100.00 92.00 95.92 NA 92.98 89.02 NA NA NA NA NA 94.29 NA NA 96.04 K jcn_only_AA prominin-like,I_chr3L_3121200_3123087 chr3L - chr3L_3121200_3127652 chr3L_3127026_3127652 chr3L_3127653_3127699 80.23 85.61 82.58 69.18 71.15 74.09 86.24 85.52 77.37 85.37 62.75 87.54 80.23 78.92 73.47 71.01 86.22 79.85 81.45 81.65 72.78 40.29 82.93 81.58 67.27 84.46 78.00 60.00 65.82 75.68 80.93 69.23 61.18 77.71 83.82 85.45 76.13 81.58 82.98 69.44 66.67 80.75 81.33 84.35 88.89 91.07 72.58 72.60 80.67 78.57 79.17 82.08 86.44 79.17 82.24 75.00 81.82 82.98 K intron_retention Mdh chr3R + chr3R_22981795_22981862 chr3R_22981794_22981795;chr3R_22981862_22981863 chr3R_22981500_22981794;chr3R_22981863_22981991 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG42490,noncoding_3620,I_chr2L_18665287_18666474,RI_chr2L_18666413_18666474,CREI_chr2L_18666629_18666680 chr2L + chr2L_18665287_18665675 chr2L_18665286_18665287;chr2L_18665675_18665676 chr2L_18665274_18665286;chr2L_18665676_18665914 18.86 NA NA NA NA NA 25.00 30.77 6.25 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 11.11 NA NA 33.33 NA NA NA NA NA 16.67 NA 25.00 NA NA NA NA NA 14.29 21.05 NA NA NA NA NA NA NA NA NA K intron_retention Fibp,RI_chr3L_19810268_19810326 chr3L - chr3L_19809921_19809970 chr3L_19809920_19809921;chr3L_19809970_19809971 chr3L_19809820_19809920;chr3L_19809971_19810103 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 9.52 NA NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Zpr1,RI_chrX_9055207_9055334 chrX - chrX_9055207_9055334 chrX_9055221_9055334 chrX_9055335_9055434;chrX_9055107_9055206 100.00 100.00 100.00 100.00 100.00 100.00 97.33 98.82 100.00 100.00 100.00 99.10 100.00 100.00 100.00 98.77 100.00 100.00 100.00 99.17 100.00 100.00 100.00 98.61 97.62 100.00 100.00 97.78 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.85 98.70 100.00 100.00 97.78 95.35 100.00 97.14 100.00 100.00 100.00 100.00 98.72 100.00 98.65 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG11665,RI_chr2R_1530001_1531078,I_chr2R_1530001_1531096,RI_chr2R_1530001_1531145,RI_chr2R_1535330_1540011 chr2R - chr2R_1530001_1531096 chr2R_1531041_1531096 chr2R_1531097_1531178;chr2R_1529901_1530000 99.59 99.29 99.31 100.00 99.14 99.15 99.47 99.59 99.67 100.00 99.20 99.60 99.19 100.00 100.00 100.00 100.00 99.24 100.00 99.68 100.00 96.12 99.42 99.34 98.98 100.00 99.44 98.61 100.00 100.00 100.00 98.86 98.67 100.00 98.99 98.08 99.28 99.19 99.32 99.52 99.10 100.00 100.00 99.43 98.86 98.84 100.00 99.30 100.00 98.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Gpo-1,I_chr2R_11747621_11747699,EI_chr2R_11747445_11747699,I_chr2R_11749758_11750187,I_chr2R_11756325_11756380 chr2R - chr2R_11748259_11748565 chr2R_11748258_11748259;chr2R_11748565_11748566 chr2R_11748106_11748258;chr2R_11748566_11748611 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA 14.29 NA NA NA NA NA NA NA K cassette Sh3beta,I_chr3L_7358062_7358169,RI_chr3L_7358065_7358169,I_chr3L_7361085_7361784 chr3L - chr3L_7358062_7359541;chr3L_7358065_7359541 chr3L_7358065_7358169,chr3L_7358062_7358169;chr3L_7359311_7359541 chr3L_7358170_7359310 chr3L_7357965_7358061;chr3L_7359542_7359548 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 75.00 96.15 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 87.50 100.00 100.00 100.00 80.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Nrx-IV,eap chr3L + chr3L_12142009_12144919 chr3L_12142008_12142009;chr3L_12144919_12144920 chr3L_12141892_12142008;chr3L_12144920_12145116 26.47 16.67 21.43 32.69 17.86 16.22 31.48 26.47 12.99 36.84 20.00 35.90 50.00 29.17 18.18 27.91 23.81 22.22 20.00 20.63 21.43 19.57 22.22 26.92 40.00 41.18 27.50 19.05 18.75 29.41 31.25 NA 43.75 23.73 27.78 69.23 24.07 21.88 28.57 37.50 30.77 18.97 30.00 29.55 15.38 29.41 16.67 29.17 29.23 28.57 30.95 25.81 15.00 NA 25.00 NA 25.00 NA K jcn_only_AA mu2,I_chr3L_1945382_1945647 chr3L - chr3L_1945592_1945647;chr3L_1945529_1945647 chr3L_1945574_1945647 chr3L_1945648_1945655;chr3L_1945437_1945528 26.09 NA 33.33 27.66 25.00 NA 7.32 26.92 26.87 NA 28.57 24.44 34.38 40.91 29.41 27.12 8.33 26.09 NA 29.33 43.48 NA 30.95 27.27 NA 21.88 19.23 NA NA NA 20.00 NA NA 9.76 NA 28.57 NA NA 23.33 25.00 NA 26.09 25.00 NA NA NA 25.00 10.00 31.48 23.08 25.00 NA NA NA 33.33 NA 22.73 23.81 K intron_retention Prx6005 chr2L - chr2L_2877390_2877610 chr2L_2877389_2877390;chr2L_2877610_2877611 chr2L_2877090_2877389;chr2L_2877611_2877803 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG8678,RI_chr2L_21213167_21213218,RI_chr2L_21213167_21213227 chr2L - chr2L_21213167_21213227 chr2L_21213167_21213222 chr2L_21213067_21213166;chr2L_21213228_21213318 92.86 96.55 88.00 95.00 80.00 83.33 97.62 93.48 92.75 92.31 93.75 90.91 95.24 94.74 90.91 96.97 95.45 83.33 96.67 89.58 94.44 89.19 97.37 96.77 92.59 92.31 95.24 89.47 92.11 90.00 92.59 95.00 89.47 87.50 96.00 95.45 88.57 83.87 97.50 97.37 95.00 92.86 82.35 94.74 88.24 90.91 94.59 92.31 89.36 88.71 94.12 100.00 95.00 88.46 96.67 96.97 87.76 100.00 K intron_retention p53,CG17119,sav chr3R - chr3R_18876847_18878643 chr3R_18876846_18876847;chr3R_18878643_18878644 chr3R_18876537_18876846;chr3R_18878644_18878670 20.71 NA NA NA NA NA 46.15 13.33 13.33 NA NA 20.00 NA NA 21.43 NA NA NA NA NA NA NA NA 21.43 NA NA NA 80.00 50.00 NA 25.00 NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA 0.00 K intron_retention CG14798 chrX + chrX_1587357_1587417 chrX_1587356_1587357;chrX_1587417_1587418 chrX_1587200_1587356;chrX_1587418_1587876 30.77 NA NA 45.45 NA NA 46.15 NA NA 36.36 NA NA NA NA NA NA NA NA NA 28.57 NA 27.27 30.77 NA NA NA 30.77 NA NA NA 20.69 NA NA NA NA 46.15 26.67 NA 30.77 37.50 NA NA NA NA NA NA NA 46.15 41.67 NA NA NA NA NA NA NA 4.17 NA K intron_retention SCAR chr2L + chr2L_10981429_10981486 chr2L_10981428_10981429;chr2L_10981486_10981487 chr2L_10981179_10981428;chr2L_10981487_10982116 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.65 0.00 0.00 0.00 2.86 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD Hcf,I_chr4_391984_392875 chr4 + chr4_380602_381212;chr4_380911_381212;chr4_380646_381212;chr4_380607_381212 chr4_380985_381212 chr4_381213_381632;chr4_380600_380601 39.53 NA NA 41.30 NA NA 29.63 0.00 35.29 NA NA 50.00 NA 54.55 NA 51.02 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 39.53 NA NA NA NA NA NA NA NA NA K cassette CG6995 chr3R + chr3R_20644572_20646818 chr3R_20644572_20645450;chr3R_20646490_20646818 chr3R_20645451_20646489 chr3R_20644527_20644571;chr3R_20646819_20646968 97.08 99.00 94.20 89.06 98.51 97.10 96.39 94.44 97.37 98.33 97.06 94.89 96.61 98.41 98.82 97.01 98.44 98.75 98.63 97.73 95.77 98.08 97.08 95.90 95.83 96.05 94.06 98.55 98.02 99.00 86.21 96.19 97.79 96.36 95.00 98.95 99.27 96.97 94.59 97.96 94.06 95.71 98.36 94.67 96.88 97.69 99.13 96.62 98.01 95.28 99.07 96.77 98.98 98.90 97.85 97.12 96.36 96.75 K alternative_acceptor Tango2,RI_chrX_13543535_13546911,I_chrX_13544101_13544542 chrX + chrX_13511970_13512305 chrX_13511970_13512134 chrX_13511850_13511969;chrX_13512306_13512435 60.00 53.33 71.43 60.00 42.86 35.71 53.85 62.50 53.85 41.67 50.00 75.00 70.00 83.33 50.00 85.71 83.33 50.00 70.00 54.17 37.50 95.00 61.11 56.00 60.00 91.67 50.00 57.14 66.67 50.00 80.00 61.11 67.86 58.82 38.89 53.33 50.00 46.67 60.87 50.00 77.78 68.18 71.43 63.16 72.00 66.67 42.86 57.14 69.57 63.16 40.00 50.00 60.00 50.00 72.73 42.11 72.73 68.42 K alternative_acceptor CG7685 chr3R + chr3R_14230882_14230959 chr3R_14230882_14230941 chr3R_14230822_14230881;chr3R_14230960_14231025 80.00 79.17 78.57 76.92 90.91 73.68 65.00 79.17 75.00 69.23 66.67 80.00 88.89 69.23 75.00 88.24 87.50 81.25 83.33 76.74 68.75 86.21 82.14 86.21 93.33 94.44 84.85 96.00 69.70 65.00 86.67 93.33 73.08 94.74 89.47 55.56 84.62 86.96 79.41 82.61 73.08 86.67 69.23 84.21 80.00 72.73 74.07 70.83 83.33 77.78 84.00 80.00 76.00 74.07 77.78 84.62 81.25 61.11 K alternative_donor miple2,I_chr3L_271508_273549,I_chr3L_271695_273549,I_chr3L_271922_273549,I_chr3L_274251_274594 chr3L + chr3L_271217_273549;chr3L_273391_273549;chr3L_271695_273549 chr3L_271792_273549 chr3L_273550_273649;chr3L_271209_271216 91.67 100.00 100.00 92.00 87.50 90.00 90.00 93.75 93.33 85.71 75.00 94.74 100.00 100.00 88.89 90.91 100.00 80.00 84.62 95.00 66.67 90.00 94.12 93.75 91.67 100.00 86.67 83.33 80.00 87.50 91.67 85.71 77.78 94.44 90.00 83.33 90.91 90.91 93.75 92.86 83.33 94.44 100.00 93.75 87.50 90.91 88.89 75.00 95.45 92.59 93.33 93.33 100.00 88.89 93.75 93.33 93.75 88.89 K alternative_acceptor CG10417,E_chr2R_1248333_1249215,RI_chr2R_1248452_1248523 chr2R - chr2R_1248452_1248523 chr2R_1248471_1248523 chr2R_1248524_1248623;chr2R_1248352_1248451 96.55 96.88 97.50 98.67 94.12 96.00 97.01 95.89 95.29 96.30 95.24 95.77 100.00 100.00 100.00 97.37 90.91 92.31 95.65 100.00 91.67 96.55 91.18 95.65 95.24 96.88 96.55 100.00 90.91 97.06 100.00 97.96 98.04 96.00 100.00 93.33 95.24 100.00 94.44 92.86 94.03 96.72 97.62 91.18 97.73 97.47 100.00 95.29 96.20 96.67 93.33 100.00 96.55 100.00 97.62 96.97 93.18 96.71 K cassette wge chr3R - chr3R_18542354_18542928 chr3R_18542354_18542655;chr3R_18542773_18542928 chr3R_18542656_18542772 chr3R_18540256_18542353;chr3R_18542929_18543063 100.00 100.00 100.00 94.74 100.00 100.00 90.91 100.00 96.88 100.00 84.62 100.00 90.91 100.00 95.65 100.00 100.00 100.00 91.67 100.00 93.75 93.62 100.00 97.14 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 97.87 100.00 100.00 85.71 100.00 96.97 100.00 97.78 95.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 97.06 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 96.43 K intron_retention Arf79F,I_chr3L_22863251_22864866,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22862875_22862941 chr3L_22862874_22862875;chr3L_22862941_22862942 chr3L_22862765_22862874;chr3L_22862942_22863165 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD SdhA,I_chr2R_15281949_15282989,I_chr2R_15283283_15283411 chr2R - chr2R_15281949_15283191 chr2R_15281949_15282989 chr2R_15281849_15281948;chr2R_15283192_15283282 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.39 0.00 0.37 0.48 0.00 0.00 0.53 0.62 0.00 0.00 0.00 1.06 0.62 0.34 0.00 0.00 0.90 0.33 0.00 0.00 0.50 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 K intron_retention Elongin-C,I_chr2R_15333309_15333432,I_chr2R_15336252_15338966 chr2R - chr2R_15333645_15333722 chr2R_15333644_15333645;chr2R_15333722_15333723 chr2R_15333433_15333644;chr2R_15333723_15333794 19.57 26.53 20.16 15.64 19.57 23.23 22.86 17.42 15.02 13.79 21.74 22.27 22.78 20.51 19.86 14.60 28.75 20.47 21.10 15.02 23.36 11.42 23.78 18.67 22.11 35.00 30.85 14.38 23.18 11.98 21.95 8.50 7.94 16.67 15.69 13.79 18.44 24.62 19.68 7.17 7.76 17.33 26.19 11.33 7.12 5.78 17.43 5.31 16.03 17.97 22.64 20.72 13.04 32.81 20.83 26.15 20.42 5.34 K jcn_only_AA CG1161,RI_chr3R_1181273_1181459 chr3R + chr3R_1181273_1181515;chr3R_1181273_1181459 chr3R_1181273_1181555 chr3R_1181173_1181272;chr3R_1181556_1181559 98.78 98.78 98.64 99.32 99.60 100.00 92.07 99.02 99.00 96.51 100.00 99.48 98.33 99.36 99.61 100.00 99.54 99.07 97.69 98.26 98.71 97.89 99.06 98.55 98.35 92.86 96.99 99.54 96.53 100.00 96.61 98.89 98.75 98.44 97.40 97.62 98.34 99.61 99.22 97.60 92.77 99.01 98.21 97.93 96.70 99.17 98.40 100.00 99.71 99.27 98.15 96.32 100.00 99.28 99.62 98.15 99.68 100.00 K intron_retention bwa,I_chr2L_20069515_20073377,I_chr2L_20073310_20073377 chr2L + chr2L_20066899_20069047 chr2L_20066898_20066899;chr2L_20069047_20069048 chr2L_20066389_20066898;chr2L_20069048_20069304 0.00 0.00 2.00 1.94 3.33 0.00 2.53 1.22 2.73 0.00 0.00 4.04 2.44 0.00 0.00 4.29 4.17 0.00 0.00 3.12 0.00 1.31 2.47 0.00 0.00 0.00 2.63 4.48 2.99 2.15 0.00 0.00 1.89 0.00 2.86 0.00 0.00 0.00 4.26 2.45 0.00 3.81 5.56 0.00 0.00 0.00 0.00 0.83 1.04 0.00 0.00 4.55 0.00 0.00 5.77 0.00 0.00 2.61 K intron_retention ens,I_chr3L_4130719_4131120 chr3L - chr3L_4130644_4131120 chr3L_4130643_4130644;chr3L_4131120_4131121 chr3L_4130619_4130643;chr3L_4131121_4131220 100.00 NA NA NA NA NA NA NA 100.00 NA NA 69.23 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG1265,I_chr3L_4255296_4255550 chr3L + chr3L_4255296_4255353;chr3L_4255296_4255609;chr3L_4255296_4255550 chr3L_4255296_4255457 chr3L_4255196_4255295;chr3L_4255610_4255650 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 3.03 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 1.30 0.00 2.13 K alternative_donor CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2439416_2439498;chr3L_2435133_2439498 chr3L_2436229_2439498 chr3L_2439499_2439583;chr3L_2434626_2435132 99.23 98.73 98.46 99.22 100.00 98.18 99.06 99.02 99.37 100.00 97.92 99.19 98.00 100.00 98.51 98.51 98.11 98.28 98.25 99.23 97.92 99.65 99.48 99.21 99.11 98.44 98.45 99.22 99.42 99.26 100.00 100.00 99.57 97.85 100.00 99.32 99.45 100.00 99.41 99.50 100.00 99.22 98.04 99.32 100.00 98.88 100.00 99.45 99.06 98.98 99.26 98.51 100.00 100.00 98.75 100.00 100.00 100.00 K intron_retention RI_chrX_7172561_7252693,CG1677,I_chrX_7178792_7252693,unc-119 chrX - chrX_7184711_7184821 chrX_7184710_7184711;chrX_7184821_7184822 chrX_7184704_7184710;chrX_7184822_7185583 0.00 0.00 0.00 0.00 4.00 0.00 0.00 2.27 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.82 0.00 0.00 0.00 0.00 0.00 0.00 5.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31743 chr2L + chr2L_16881802_16885263 chr2L_16881801_16881802;chr2L_16885263_16885264 chr2L_16881617_16881801;chr2L_16885264_16885735 0.00 NA NA 0.00 NA NA NA NA 0.00 0.00 NA 15.38 NA NA NA 0.00 NA NA NA 12.50 NA 0.00 NA NA NA NA 12.50 7.14 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 5.88 5.00 NA NA 14.29 0.00 0.00 NA NA NA NA NA 0.00 NA K jcn_only_AA CG7120,I_chr3L_8393044_8393104,I_chr3L_8393044_8393116 chr3L + chr3L_8393044_8393181 chr3L_8393044_8393104 chr3L_8392944_8393043;chr3L_8393182_8393204 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA NA 3.85 NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 15.00 NA NA NA NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 3.23 K alternative_acceptor Trap1 chr2R - chr2R_2521454_2521515;chr2R_2521438_2521515 chr2R_2521435_2521515 chr2R_2521516_2521564;chr2R_2521152_2521434 0.00 0.00 0.00 0.00 3.57 3.57 0.00 1.79 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 2.86 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 3.03 2.94 0.00 2.22 0.00 0.00 0.00 1.89 0.00 0.00 0.00 2.94 0.00 0.00 0.00 K intron_retention CG3353,RI_chr3R_17043671_17044394 chr3R - chr3R_17043671_17043725 chr3R_17043670_17043671;chr3R_17043725_17043726 chr3R_17043571_17043670;chr3R_17043726_17044340 0.00 0.00 0.00 6.67 0.00 0.00 0.00 1.56 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 11.76 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette CG18659,E_chr2R_5011363_5019110,RI_chr2R_5013572_5014531,I_chr2R_5016147_5016997 chr2R - chr2R_5011651_5014923 chr2R_5011651_5012248;chr2R_5012726_5013055;chr2R_5013572_5014531;chr2R_5014668_5014923 chr2R_5012249_5012725;chr2R_5013056_5013571;chr2R_5014532_5014667 chr2R_5011194_5011650;chr2R_5014924_5015382 97.83 97.92 96.88 84.09 100.00 96.67 95.24 97.30 96.97 100.00 95.45 98.53 100.00 100.00 96.97 100.00 100.00 100.00 100.00 96.30 83.87 81.02 94.59 98.44 97.92 96.43 98.33 96.67 98.39 96.15 100.00 97.83 94.52 97.73 96.00 98.08 97.80 98.11 95.79 98.73 94.64 96.15 95.45 96.36 100.00 98.57 98.36 100.00 98.33 98.39 93.55 96.77 100.00 92.59 97.14 97.92 98.00 98.31 K cassette CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525393_1526659 chr3L_1525393_1526333;chr3L_1526399_1526659 chr3L_1526334_1526398 chr3L_1525293_1525392;chr3L_1526660_1526731 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N intron_retention kay,noncoding_19957,R_chr3R_25614823_25615439,E_chr3R_25616137_25617114 chr3R + chr3R_25599544_25599635 chr3R_25599543_25599544;chr3R_25599635_25599636 chr3R_25598998_25599543 100.00 NA NA 100.00 NA NA 100.00 62.50 100.00 NA NA 60.00 100.00 46.15 NA 100.00 100.00 100.00 NA 42.86 50.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 57.14 NA 100.00 100.00 100.00 100.00 47.37 NA 52.38 NA NA NA 36.36 NA 63.16 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K jcn_only_AA SMC2,I_chr2R_10737857_10737917 chr2R - chr2R_10737857_10737917 chr2R_10737862_10737917 chr2R_10737918_10738017;chr2R_10737757_10737856 100.00 100.00 97.53 98.72 96.77 100.00 98.44 100.00 99.03 100.00 100.00 95.96 100.00 100.00 100.00 98.13 100.00 100.00 100.00 99.36 98.28 100.00 100.00 94.64 100.00 100.00 100.00 100.00 94.74 100.00 100.00 98.39 100.00 100.00 97.62 100.00 98.36 94.12 94.83 100.00 100.00 99.18 100.00 100.00 100.00 100.00 98.36 99.07 99.22 98.51 98.63 95.24 100.00 100.00 98.88 96.88 98.04 100.00 K intron_retention CG32103,I_chr3L_12398261_12403200 chr3L - chr3L_12407187_12407805 chr3L_12407186_12407187;chr3L_12407805_12407806 chr3L_12407030_12407186;chr3L_12407806_12407901 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA 5.00 NA 0.00 NA 0.00 NA 20.00 5.00 7.69 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA 0.00 NA 8.33 NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA K alternative_acceptor CG31068 chr3R + chr3R_23061584_23061627;chr3R_23061584_23061639 chr3R_23061584_23061636 chr3R_23061427_23061583;chr3R_23061640_23061706 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor His4r chr3R + chr3R_10451640_10451747;chr3R_10451538_10451747 chr3R_10451564_10451747 chr3R_10451748_10451951;chr3R_10451469_10451537 0.67 0.44 1.20 0.61 0.87 1.10 1.00 0.58 0.89 0.00 0.93 0.47 1.09 0.49 2.22 1.00 1.12 0.35 0.62 0.87 0.90 0.00 0.00 0.00 0.00 0.54 1.35 2.00 2.01 1.37 1.04 0.41 0.46 0.84 0.00 0.00 0.82 0.00 0.00 1.88 0.67 0.74 0.81 0.00 0.34 1.73 0.00 0.67 0.45 1.63 1.56 0.00 1.03 0.00 0.24 0.49 0.71 1.07 K alternative_donor CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3018025_3018081;chr2L_3018025_3018274;chr2L_3018025_3018085;chr2L_3018025_3018278 chr2L_3018025_3018163 chr2L_3017982_3018024;chr2L_3018279_3018287 50.00 66.67 NA 30.00 NA NA 16.67 20.00 33.33 NA NA 27.27 NA 50.00 50.00 16.67 0.00 NA NA 33.33 NA 33.33 NA 33.33 NA NA NA NA NA NA 55.56 75.00 NA 60.00 NA NA NA NA NA 75.00 66.67 44.44 66.67 44.44 100.00 40.00 NA 58.33 57.14 NA NA NA NA NA 100.00 NA NA 62.50 K alternative_acceptor RpL27A,E_chr2L_4457411_4457977,I_chr2L_4458058_4458120 chr2L - chr2L_4457290_4457374;chr2L_4457319_4457374 chr2L_4457275_4457374 chr2L_4457375_4457410;chr2L_4457188_4457274 0.00 0.00 0.00 0.09 0.10 0.00 0.09 0.00 0.05 0.00 0.00 0.04 0.09 0.00 0.00 0.08 0.00 0.09 0.08 0.06 0.00 0.00 0.00 0.10 0.00 0.00 0.00 4.59 0.13 0.00 0.07 0.12 0.08 0.06 0.00 0.00 0.00 0.00 0.12 0.05 0.05 0.07 0.00 0.16 0.00 0.00 0.00 0.00 0.06 0.09 0.00 0.00 0.00 0.00 0.06 0.00 0.07 0.00 K alternative_acceptor smi35A,I_chr2L_14197568_14197656,I_chr2L_14197587_14197656,E_chr2L_14222082_14233893,RI_chr2L_14233579_14233647 chr2L - chr2L_14197568_14197656;chr2L_14197587_14197656 chr2L_14197294_14197656 chr2L_14197657_14197756;chr2L_14196927_14197293 100.00 100.00 100.00 96.97 100.00 100.00 92.86 97.44 97.40 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 91.30 100.00 96.88 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.23 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3295176;chr2R_3294566_3295244;chr2R_3294566_3294634;chr2R_3294566_3294636;chr2R_3294566_3294638;chr2R_3294566_3294642;chr2R_3294566_3294714 chr2R_3294566_3295280 chr2R_3294491_3294565;chr2R_3295281_3295302 2.53 8.33 3.12 0.00 NA 7.41 0.00 5.88 7.32 NA 6.06 1.85 12.00 4.76 2.56 0.00 0.00 0.00 7.69 2.99 6.67 0.00 2.50 6.45 9.38 0.00 4.35 0.00 0.00 0.00 5.71 0.00 3.03 0.00 NA NA 4.65 0.00 9.76 1.82 0.00 3.77 4.55 0.00 5.00 2.38 0.00 0.00 2.99 0.00 0.00 0.00 8.57 NA 3.33 8.33 0.00 1.79 K cassette C3G chrX - chrX_6680846_6681383 chrX_6680846_6681128;chrX_6681282_6681383 chrX_6681129_6681281 chrX_6680189_6680845;chrX_6681384_6681553 94.53 97.65 95.86 91.62 93.91 95.38 88.20 90.10 95.68 84.85 93.02 97.10 95.88 98.15 93.28 97.60 93.68 92.91 84.55 93.92 95.60 66.55 90.35 93.41 92.38 91.40 93.17 49.61 94.83 98.19 96.36 96.20 95.00 95.71 94.85 92.86 92.76 92.39 95.80 87.80 92.50 96.23 100.00 92.78 96.23 96.24 95.50 96.92 98.35 90.10 93.67 92.04 95.74 91.78 94.53 97.83 97.37 99.28 K jcn_only_AA RecQ5 chr3L - chr3L_14623293_14623619 chr3L_14623545_14623619 chr3L_14623620_14624918;chr3L_14622841_14623292 8.27 7.14 15.91 3.03 4.44 8.33 38.18 10.71 6.78 NA 4.65 6.49 0.00 14.58 8.47 12.24 0.00 9.52 13.33 2.90 8.33 14.71 6.33 8.00 16.33 9.09 7.14 2.22 14.29 3.03 26.09 15.00 7.14 6.45 12.07 21.21 13.73 2.70 3.85 13.95 NA 11.39 5.26 6.25 NA 10.71 10.87 10.00 10.11 6.98 7.50 26.19 4.44 8.33 8.20 3.57 3.51 3.45 K intron_retention RI_chr2L_8218680_8218853,Pvr,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8222115_8222225 chr2L_8222114_8222115;chr2L_8222225_8222226 chr2L_8222103_8222114;chr2L_8222226_8222376 6.54 13.33 5.85 7.69 6.90 4.35 5.32 6.44 8.16 3.08 7.69 6.76 9.68 6.20 8.33 9.30 6.35 5.30 6.87 6.05 8.39 6.45 6.11 7.46 11.18 7.44 13.20 18.07 6.90 7.23 6.62 6.54 4.59 5.94 8.38 6.36 6.54 36.36 5.71 7.08 6.70 4.39 7.14 6.21 3.62 5.47 4.38 6.12 7.00 5.94 5.26 6.14 4.46 5.22 6.81 6.87 3.70 5.37 K alternative_donor Gp150,I_chr2R_18205316_18205386,I_chr2R_18213233_18213308 chr2R + chr2R_18205274_18205386;chr2R_18205243_18205386;chr2R_18205316_18205386 chr2R_18205282_18205386 chr2R_18205387_18205459;chr2R_18205216_18205242 4.44 2.46 0.64 1.04 2.59 6.83 7.99 2.48 2.12 6.45 3.20 2.99 3.16 3.41 1.99 4.28 1.47 1.17 4.82 6.02 3.05 7.25 6.47 6.35 5.79 9.79 13.54 6.25 18.99 1.47 1.79 4.44 0.78 3.90 9.20 13.33 4.46 8.89 8.33 7.38 4.76 3.07 2.67 10.81 2.56 5.41 5.26 8.33 3.11 8.77 6.32 5.83 2.94 4.00 1.27 3.85 2.53 6.02 K alternative_donor RpL3,I_chr3R_7047694_7047896,I_chr3R_7047774_7047896,E_chr3R_7047964_7050565,I_chr3R_7049970_7050189 chr3R + chr3R_7047694_7047896;chr3R_7047655_7047896 chr3R_7047774_7047896 chr3R_7047897_7047963;chr3R_7047619_7047654 0.00 0.00 0.00 0.04 0.00 0.00 0.04 0.02 0.03 0.00 0.00 0.03 0.10 0.00 0.03 0.00 0.04 0.00 0.00 0.02 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.24 0.53 0.04 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.02 0.04 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.07 K intron_retention Stat92E,att-ORFB chr3R - chr3R_16365639_16365696 chr3R_16365638_16365639;chr3R_16365696_16365697 chr3R_16365381_16365638;chr3R_16365697_16366176 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Cip4,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4324448_4324861 chr3L_4324451_4324861 chr3L_4324862_4324996;chr3L_4324284_4324447 34.62 34.15 25.00 44.44 25.71 35.48 40.45 33.33 39.18 37.74 15.00 35.06 21.05 19.35 26.67 26.92 26.83 18.06 30.30 40.40 21.74 38.46 40.62 41.86 35.29 26.53 32.08 30.43 35.14 31.48 27.27 26.47 23.40 38.00 44.44 30.77 42.55 36.36 50.00 39.02 26.09 32.10 26.32 50.00 25.81 34.48 45.71 34.62 39.78 39.13 41.07 53.85 50.00 44.83 23.08 35.48 45.45 33.33 K intron_retention simj,I_chr3L_10680263_10680313 chr3L + chr3L_10679362_10680175 chr3L_10679361_10679362;chr3L_10680175_10680176 chr3L_10679064_10679361;chr3L_10680176_10680262 3.03 1.39 4.48 4.76 0.00 0.00 7.25 0.00 3.91 2.50 3.28 3.54 5.45 6.12 2.60 5.41 5.71 1.35 4.17 3.57 3.64 4.55 3.68 1.98 2.22 0.00 4.92 4.43 2.05 3.21 3.28 0.00 0.69 6.67 2.06 6.19 2.43 2.88 3.11 2.73 1.27 2.78 3.57 2.78 3.45 3.20 2.27 4.32 1.57 2.27 3.85 0.00 1.41 0.00 3.53 0.00 3.03 1.00 K alternative_acceptor betaTub56D,I_chr2R_15336252_15336648,I_chr2R_15336252_15337409,I_chr2R_15336252_15338966 chr2R - chr2R_15336150_15338966 chr2R_15336252_15338966 chr2R_15338967_15339039;chr2R_15334824_15336149 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.92 100.00 100.00 99.92 100.00 100.00 100.00 100.00 100.00 99.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.93 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9770053_9788941 chr2R_9770053_9787870;chr2R_9787955_9788941 chr2R_9787871_9787954 chr2R_9769906_9770052;chr2R_9788942_9789041 36.11 33.33 37.50 42.86 40.74 36.36 26.39 35.48 38.14 43.90 21.95 26.44 86.67 39.53 40.54 30.88 10.00 36.11 33.33 28.00 18.52 25.66 26.79 34.62 21.95 43.75 44.44 75.76 52.78 34.09 25.00 NA 25.45 35.38 27.27 42.31 41.07 31.03 37.14 46.67 NA 34.67 37.50 30.00 NA 16.67 NA 44.07 37.78 NA 37.50 30.00 42.86 NA 46.30 NA NA 45.45 K intron_retention rod,CG1635,I_chr3R_27416864_27416939 chr3R + chr3R_27412966_27413024 chr3R_27412965_27412966;chr3R_27413024_27413025 chr3R_27412140_27412965;chr3R_27413025_27413658 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 2.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 2.29 0.00 2.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 8.89 0.00 0.00 1.49 0.00 0.00 0.00 K alternative_acceptor hppy,I_chr2R_15066378_15066915,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15066378_15066881;chr2R_15066378_15067003 chr2R_15066378_15066915 chr2R_15066360_15066377;chr2R_15067004_15067015 7.20 5.26 8.33 16.00 12.50 6.67 10.34 5.00 4.76 0.00 25.00 4.17 16.67 28.57 6.67 19.44 11.76 12.50 9.52 2.86 14.29 9.09 3.45 0.00 5.56 7.69 0.00 5.56 4.17 4.76 26.67 NA 15.38 4.35 5.56 0.00 5.26 10.53 11.11 7.50 0.00 4.35 10.00 1.82 11.11 6.67 11.76 6.90 7.69 10.00 3.12 5.56 7.69 NA 5.26 8.33 NA 8.33 K intron_retention awd chr3R - chr3R_27571313_27571491 chr3R_27571312_27571313;chr3R_27571491_27571492 chr3R_27571190_27571312;chr3R_27571492_27571619 0.36 0.28 0.42 0.40 0.44 0.15 0.59 0.29 0.38 0.42 0.23 0.47 0.48 0.28 0.19 0.29 0.00 0.13 0.20 0.34 0.35 0.14 0.22 0.24 0.44 0.25 0.36 0.65 0.49 0.32 0.32 0.27 0.43 0.25 0.38 0.62 0.36 0.41 0.14 0.40 0.67 0.28 0.41 0.33 0.51 0.49 0.75 0.76 0.31 0.62 0.59 0.41 0.35 0.36 0.15 0.44 0.30 0.73 K jcn_only_AD CG17159,CG17162,noncoding_25215 chrXHet - chrXHet_69232_75430;chrXHet_69232_75279 chrXHet_69232_75250 chrXHet_69195_69231;chrXHet_75431_75453 77.67 NA 83.87 73.33 NA 85.00 66.67 76.47 81.03 NA 90.32 80.95 NA NA 78.26 80.77 NA 56.52 NA 80.00 63.64 NA 69.57 79.17 NA 83.87 NA NA NA NA 90.48 NA NA 73.17 NA NA 72.41 76.19 78.38 65.22 NA 74.29 NA 90.00 NA NA NA NA 77.08 NA 79.17 76.92 NA NA 70.59 NA NA NA K alternative_donor CG4699 chr3R + chr3R_11619752_11620550;chr3R_11619772_11620550;chr3R_11619776_11620550;chr3R_11619676_11620550 chr3R_11619570_11620550 chr3R_11620551_11621301;chr3R_11619539_11619569 0.00 5.56 0.00 2.38 0.00 0.00 0.00 0.00 2.22 0.00 5.26 2.22 0.00 0.00 3.45 0.00 0.00 0.00 3.70 6.12 0.00 0.00 0.00 0.00 0.00 3.23 0.00 6.25 0.00 0.00 0.00 0.00 0.00 5.00 5.26 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.41 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 K intron_retention CG12054 chr3R + chr3R_27050955_27051534 chr3R_27050954_27050955;chr3R_27051534_27051535 chr3R_27050886_27050954;chr3R_27051535_27051798 96.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD larp,F_chr3R_24151542_24153876,I_chr3R_24160430_24160932,I_chr3R_24160430_24160971,RI_chr3R_24160430_24161527 chr3R - chr3R_24160430_24161729;chr3R_24160430_24160971;chr3R_24160430_24160975;chr3R_24160430_24160979;chr3R_24160430_24161939;chr3R_24160430_24161527 chr3R_24160430_24160932 chr3R_24160330_24160429;chr3R_24161940_24162125 3.10 4.39 0.00 1.67 1.90 1.98 2.79 3.51 2.77 5.62 4.60 2.50 2.42 3.20 2.27 1.59 0.69 3.10 3.68 2.91 4.63 5.15 4.02 2.90 4.60 8.57 5.73 2.04 4.08 5.04 2.10 8.70 6.22 2.52 4.42 2.52 4.93 1.89 2.24 8.48 4.94 1.37 2.27 8.82 7.58 7.27 2.22 7.60 4.52 0.00 5.33 2.06 3.03 1.92 2.84 3.17 4.94 2.68 K intron_retention alphaTub84B,EI_chr3R_2912813_2912955 chr3R + chr3R_2912467_2912955 chr3R_2912466_2912467;chr3R_2912955_2912956 chr3R_2912232_2912466;chr3R_2912956_2913055 0.00 0.18 0.00 0.03 0.10 0.11 0.00 0.07 0.00 0.18 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.12 0.00 0.00 0.00 0.00 0.28 0.70 0.42 0.14 0.03 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.15 0.06 0.00 0.00 0.00 0.02 0.05 0.00 0.03 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.09 K intron_retention CG1622,I_chrX_13191916_13192167,I_chrX_13192409_13192738,EI_chrX_13192857_13192928 chrX + chrX_13192221_13192738 chrX_13192220_13192221;chrX_13192738_13192739 chrX_13192168_13192220;chrX_13192739_13192838 10.00 NA NA NA NA NA NA NA 23.08 NA NA 18.75 NA NA NA NA NA 6.67 NA 21.43 NA 0.00 NA NA NA NA NA NA 0.00 NA 8.33 NA 15.38 NA NA 0.00 NA NA NA NA 15.00 NA NA NA NA 0.00 NA 0.00 41.67 NA 16.67 NA NA NA NA NA NA 10.00 N cassette msn,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2560296_2563817;chr3L_2558390_2563817 chr3L_2558390_2561931,chr3L_2560296_2561931;chr3L_2562844_2563817 chr3L_2561932_2562843 chr3L_2558293_2558389;chr3L_2563818_2563917 74.33 59.40 82.53 82.86 65.71 71.78 92.63 83.98 78.25 68.64 73.71 79.70 53.12 78.11 70.11 93.40 80.90 56.89 85.06 82.77 77.25 38.13 69.50 60.59 63.09 80.63 78.46 46.73 64.41 75.95 87.61 68.35 67.42 82.37 67.86 81.95 59.24 54.02 62.37 81.38 79.67 69.67 80.00 76.54 61.83 70.48 61.57 77.04 80.37 68.84 78.33 71.49 74.33 67.23 74.34 66.24 78.16 82.24 K jcn_only_AD CG6364,I_chr3R_20116610_20116825 chr3R + chr3R_20116875_20118559 chr3R_20118453_20118559 chr3R_20118560_20118691 92.00 NA NA 90.91 NA NA 80.00 NA 89.66 NA NA NA NA NA 100.00 NA NA NA NA NA NA 81.48 NA NA NA NA NA NA NA NA 95.00 NA 90.48 NA NA NA 90.48 NA 82.61 95.24 NA 93.10 NA NA 82.14 100.00 92.00 85.71 95.83 95.83 NA NA NA NA NA NA 95.00 95.83 K intron_retention ago,I_chr3L_4251841_4253988 chr3L - chr3L_4248123_4248182 chr3L_4248122_4248123;chr3L_4248182_4248183 chr3L_4247912_4248122;chr3L_4248183_4248408 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 1.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9390195;chr2R_9389597_9390151;chr2R_9389597_9389907;chr2R_9389597_9389940;chr2R_9389597_9390293;chr2R_9389597_9389751;chr2R_9389597_9389753;chr2R_9389597_9389757 chr2R_9389597_9390264 chr2R_9389497_9389596;chr2R_9390294_9390295 0.87 0.00 3.49 3.92 4.35 0.00 0.85 4.50 0.62 0.00 0.00 0.00 0.00 0.00 1.20 0.87 0.00 1.10 3.19 1.75 0.00 1.82 0.00 4.11 0.00 4.11 0.00 0.00 1.85 0.00 5.88 5.00 2.33 0.83 0.00 1.03 1.67 2.70 1.67 0.96 4.00 1.45 0.00 0.00 0.00 0.00 1.18 0.00 2.24 1.64 1.39 0.00 0.00 0.00 3.57 0.00 0.00 3.51 K intron_retention RpS25,I_chr3R_7041333_7041414,I_chr3R_7041347_7041556,RI_chr3R_7044164_7044221 chr3R - chr3R_7041692_7041784 chr3R_7041691_7041692;chr3R_7041784_7041785 chr3R_7041472_7041691;chr3R_7041785_7041938 11.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA 11.76 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RI_chrX_2612780_2612845,ttm50,crm chrX - chrX_2625511_2625566 chrX_2625510_2625511;chrX_2625566_2625567 chrX_2624982_2625510;chrX_2625567_2625745 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 3.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention muskelin chr2R - chr2R_8518286_8518348 chr2R_8518285_8518286;chr2R_8518348_8518349 chr2R_8517889_8518285;chr2R_8518349_8518490 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 NA 100.00 NA 90.91 100.00 NA NA NA NA 100.00 100.00 NA 95.65 90.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 K alternative_donor SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_17027129_17027406 chr3R_17027131_17027406 chr3R_17027407_17027904;chr3R_17027063_17027128 95.24 91.67 NA 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 90.00 NA 90.32 100.00 100.00 90.00 NA 92.86 95.24 100.00 90.00 87.50 NA 90.91 100.00 88.89 100.00 88.00 100.00 95.24 95.65 NA 100.00 NA 93.75 NA NA 100.00 NA 100.00 93.33 82.35 NA 100.00 83.33 NA 88.89 NA NA K jcn_only_AA cwo,noncoding_15870,chr3R_6215619_6216520.0,chr3R_6216827_6217291.0,chr3R_6217556_6219555.0,chr3R_6219984_6221958.0 chr3R + chr3R_6215160_6222426;chr3R_6215160_6222423 chr3R_6215160_6222418 chr3R_6214846_6215159;chr3R_6222427_6222542 96.30 95.65 NA 100.00 NA NA NA 96.15 100.00 NA NA 100.00 NA NA NA 90.00 NA NA NA 89.29 NA 98.08 95.92 96.77 NA NA 96.30 NA 96.97 97.22 NA NA 100.00 93.10 96.30 100.00 97.14 92.00 95.65 92.68 92.31 96.15 NA 95.45 NA NA NA 98.00 96.88 94.59 100.00 100.00 NA NA 95.24 NA NA 96.15 K cassette Gmap,I_chrX_15393496_15401194,I_chrX_15400854_15401194,I_chrX_15402291_15403750 chrX + chrX_15393496_15401194 chrX_15393496_15397615;chrX_15400495_15401194 chrX_15397616_15400494 chrX_15393449_15393495;chrX_15401195_15401294 99.22 96.83 98.21 100.00 97.73 100.00 97.53 98.82 100.00 98.51 100.00 99.01 97.87 100.00 100.00 100.00 100.00 100.00 100.00 99.22 100.00 98.89 97.94 100.00 100.00 100.00 97.37 100.00 98.33 98.53 100.00 98.15 100.00 100.00 98.00 97.14 100.00 98.89 100.00 99.06 98.31 99.13 97.78 100.00 98.53 98.70 100.00 100.00 99.09 100.00 98.13 100.00 98.73 100.00 98.51 100.00 98.92 100.00 K intron_retention Nup154,I_chr2L_11009331_11009442,I_chr2L_11011380_11011453 chr2L + chr2L_11009812_11009878 chr2L_11009811_11009812;chr2L_11009878_11009879 chr2L_11009784_11009811;chr2L_11009879_11009944 90.35 89.47 94.44 94.87 73.33 93.75 82.50 90.70 89.13 NA 91.67 97.14 86.96 89.66 88.24 93.33 100.00 91.67 91.67 87.10 90.00 80.00 87.50 93.75 93.33 94.12 87.50 NA NA 91.67 72.73 75.00 100.00 90.00 92.86 92.31 75.00 84.62 78.57 83.33 96.00 97.37 90.91 94.44 94.12 88.00 100.00 76.47 90.91 89.66 82.61 90.00 88.89 89.47 85.71 96.15 95.45 92.00 K cassette sw chrX - chrX_20104518_20105848 chrX_20104518_20105401;chrX_20105435_20105848 chrX_20105402_20105434 chrX_20104497_20104517;chrX_20105849_20105976 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 5.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA K alternative_donor tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5960163;chr3R_5959310_5960041;chr3R_5959310_5959789;chr3R_5959310_5960049;chr3R_5959310_5960182;chr3R_5959310_5960026;chr3R_5959310_5960158;chr3R_5959310_5959679 chr3R_5959310_5960101 chr3R_5958937_5959309;chr3R_5960183_5960224 20.83 14.29 30.00 16.00 25.00 10.00 34.78 27.27 34.48 20.00 14.29 22.73 33.33 25.00 21.43 23.33 20.00 30.00 23.53 21.74 12.50 25.00 25.00 12.50 16.67 11.11 20.00 12.50 0.00 11.11 23.08 0.00 0.00 25.93 25.00 22.22 25.00 25.00 16.67 11.11 33.33 20.83 27.27 33.33 0.00 12.50 33.33 4.76 18.75 20.00 30.00 28.57 16.67 0.00 18.75 20.00 33.33 0.00 K intron_retention lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3963954_3964764 chr2R_3963953_3963954;chr2R_3964764_3964765 chr2R_3963798_3963953;chr2R_3964765_3964796 21.54 18.97 14.29 28.57 16.28 23.53 35.71 21.74 23.17 17.14 27.27 28.30 30.95 18.52 19.15 29.03 15.62 16.33 18.42 20.99 23.33 28.30 18.42 10.96 19.57 25.00 30.19 58.82 23.08 24.44 15.38 25.00 21.88 21.54 21.43 7.69 15.79 22.45 18.42 23.88 23.08 24.36 17.65 29.79 13.16 14.00 8.96 35.00 26.79 17.65 16.98 20.00 18.52 7.94 24.07 21.82 10.26 46.15 K alternative_donor miple2,I_chr3L_271508_273549,I_chr3L_271695_273549,I_chr3L_271922_273549,I_chr3L_274251_274594 chr3L + chr3L_271792_273549;chr3L_273391_273549;chr3L_271695_273549 chr3L_271217_273549 chr3L_273550_273649;chr3L_271209_271216 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Amun,I_chrX_11607839_11608272,I_chrX_11607842_11608105,I_chrX_11607842_11608125,RI_chrX_11607842_11608272 chrX - chrX_11607718_11607787;chrX_11607631_11607787 chrX_11607722_11607787 chrX_11607788_11607838;chrX_11606802_11607630 100.00 100.00 98.78 100.00 100.00 100.00 100.00 100.00 98.90 97.78 100.00 100.00 100.00 100.00 100.00 98.96 100.00 100.00 98.21 98.79 100.00 100.00 98.59 98.61 100.00 98.00 98.61 100.00 98.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.01 98.39 99.21 100.00 100.00 100.00 100.00 100.00 98.18 100.00 98.33 100.00 98.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Tsp42Ee,I_chr2R_2899841_2899895,RI_chr2R_2904593_2904783 chr2R + chr2R_2899841_2900537 chr2R_2899840_2899841;chr2R_2900537_2900538 chr2R_2899753_2899840;chr2R_2900538_2900621 0.57 0.61 0.50 0.29 0.35 0.44 0.76 0.36 0.37 1.47 0.29 0.43 0.41 0.57 0.46 0.39 0.47 0.36 0.61 0.26 0.49 0.89 0.93 1.42 1.09 0.72 1.76 3.29 1.80 0.61 0.43 0.33 0.27 0.32 0.74 1.34 0.85 0.77 0.77 1.12 0.42 0.50 0.52 0.65 0.43 0.70 1.22 0.54 0.24 1.19 0.61 0.87 0.93 0.88 0.29 0.85 0.57 0.40 K intron_retention CG10353,I_chrX_11775936_11778830,I_chrX_11778617_11778830,RI_chrX_11780885_11780988 chrX - chrX_11775936_11777133 chrX_11775935_11775936;chrX_11777133_11777134 chrX_11775836_11775935;chrX_11777134_11777218 13.04 9.09 9.52 21.88 22.22 12.50 7.50 9.76 10.53 NA 0.00 14.29 15.38 12.50 14.81 15.56 19.05 7.69 9.38 9.09 13.04 33.33 7.41 9.09 22.22 0.00 12.50 NA 38.46 19.05 19.35 NA 4.35 10.64 12.50 8.00 10.00 23.08 20.69 18.18 15.38 17.95 18.18 5.56 NA 8.33 20.00 11.63 16.33 NA 20.00 18.75 11.11 15.38 36.84 20.00 NA 10.34 K alternative_acceptor Exp6,I_chrX_369347_369797 chrX - chrX_368234_368342 chrX_368252_368342 chrX_368343_368539;chrX_367797_368233 4.76 5.00 4.35 5.71 NA NA 0.00 4.00 6.06 NA NA 3.70 5.56 0.00 NA 12.50 NA 7.14 NA 8.57 6.67 4.55 3.03 4.35 NA NA 8.70 NA 4.55 5.56 5.56 NA 3.12 3.23 0.00 7.14 4.00 5.56 3.85 6.67 4.35 0.00 NA 0.00 0.00 5.56 6.67 4.76 7.41 0.00 9.09 NA NA NA 5.00 0.00 NA 6.25 K alternative_acceptor Klc,I_chr3L_12741783_12742943,I_chr3L_12741838_12743062 chr3L - chr3L_12739928_12739997 chr3L_12739931_12739997 chr3L_12739998_12740303;chr3L_12739716_12739927 97.50 97.30 100.00 94.67 92.86 96.15 97.33 95.24 98.85 100.00 100.00 92.42 97.67 97.56 96.88 98.70 100.00 96.00 97.56 100.00 95.00 100.00 96.00 96.88 100.00 96.67 97.06 95.00 96.55 100.00 98.11 94.74 100.00 98.51 100.00 100.00 92.86 100.00 100.00 97.56 96.83 98.28 100.00 96.67 97.22 97.50 93.10 98.33 98.59 92.50 95.24 96.88 100.00 100.00 94.87 97.37 97.14 98.33 K intron_retention ATPsyn-Cf6,I_chr3R_19181508_19181563,I_chr3R_19181524_19181702 chr3R - chr3R_19181508_19181584 chr3R_19181507_19181508;chr3R_19181584_19181585 chr3R_19181424_19181507;chr3R_19181585_19181663 7.69 NA NA NA NA NA 7.69 NA 17.65 NA NA 14.29 NA NA NA NA NA 7.69 NA 7.69 NA NA NA NA NA 22.22 NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Spec2,noncoding_14812,CG2911 chr3R - chr3R_1448411_1448469 chr3R_1448410_1448411;chr3R_1448469_1448470 chr3R_1447834_1448410;chr3R_1448470_1448873 14.29 NA NA 16.67 NA NA 6.25 NA NA NA NA NA NA NA NA 23.53 NA NA NA 14.29 NA 28.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA 0.00 6.67 K alternative_donor ced-6,I_chr2R_5324717_5324924,I_chr2R_5328640_5328696 chr2R - chr2R_5325238_5329011;chr2R_5325238_5329037 chr2R_5325238_5328696 chr2R_5324931_5325237;chr2R_5329038_5329082 98.96 100.00 98.98 98.60 98.39 98.73 99.33 98.35 99.13 97.10 100.00 97.86 100.00 100.00 96.26 100.00 100.00 97.83 99.12 99.20 100.00 95.59 99.22 98.06 100.00 98.92 98.68 98.59 98.80 98.73 99.02 98.18 97.21 99.42 100.00 100.00 98.91 98.51 100.00 97.72 100.00 98.48 98.84 98.96 98.90 100.00 100.00 99.00 98.56 97.89 99.08 98.67 100.00 100.00 98.47 98.84 100.00 99.18 K alternative_acceptor CG1140,I_chr3L_1964610_1964836 chr3L + chr3L_1964610_1965074;chr3L_1964610_1965059 chr3L_1964610_1964836 chr3L_1964541_1964609;chr3L_1965075_1965273 3.33 0.00 2.50 0.00 3.70 2.86 7.14 3.33 6.25 0.00 3.33 6.02 10.00 8.11 2.08 3.33 3.45 5.88 6.45 2.54 3.12 38.10 5.66 3.92 2.78 6.67 0.00 0.00 0.00 2.78 2.04 3.23 3.28 7.69 3.33 2.13 5.88 2.56 4.11 9.09 0.00 5.06 0.00 5.00 5.41 3.92 8.33 3.39 2.78 4.55 2.00 6.45 0.00 1.96 3.92 2.78 2.27 2.13 K intron_retention scaf6,EI_chr3L_17037760_17037808 chr3L - chr3L_17033311_17033538 chr3L_17033310_17033311;chr3L_17033538_17033539 chr3L_17033238_17033310;chr3L_17033539_17033701 12.77 NA 17.65 7.69 NA 12.50 11.76 17.39 19.51 NA NA 15.00 29.41 22.22 NA 9.68 NA NA 18.18 6.67 NA NA 14.71 0.00 0.00 NA 20.00 NA NA NA 20.00 0.00 0.00 18.52 0.00 22.22 13.04 0.00 12.00 16.67 15.38 8.33 14.29 5.00 NA 0.00 0.00 7.69 23.81 NA 18.52 NA NA NA 25.00 5.88 7.14 NA K intron_retention dia chr2L + chr2L_20760842_20763496 chr2L_20760841_20760842;chr2L_20763496_20763497 chr2L_20760525_20760841;chr2L_20763497_20765452 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 K alternative_acceptor smt3,I_chr2L_6967327_6967507 chr2L - chr2L_6967330_6967507 chr2L_6967386_6967507 chr2L_6967508_6967593;chr2L_6966982_6967329 100.00 100.00 100.00 99.86 99.75 100.00 99.83 99.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.78 100.00 99.79 99.77 100.00 100.00 100.00 100.00 99.80 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.75 100.00 99.78 100.00 100.00 99.86 100.00 K jcn_only_AD Pkc98E chr3R + chr3R_24865713_24866817 chr3R_24865795_24866817 chr3R_24866818_24867147;chr3R_24865708_24865712 82.86 NA NA 91.30 NA NA NA 81.82 77.78 NA NA 82.76 NA NA NA NA NA NA NA 77.42 NA 51.43 89.66 NA NA NA NA NA 93.33 81.48 66.67 NA NA 80.95 NA NA 82.86 NA 100.00 92.00 NA 96.00 NA NA NA NA NA 95.65 83.33 NA NA NA NA NA NA NA NA NA K intron_retention bur,psnoRNA:bur-a,I_chr2L_21177679_21178250,I_chr2L_21177960_21179329 chr2L - chr2L_21176972_21177204 chr2L_21176971_21176972;chr2L_21177204_21177205 chr2L_21176671_21176971;chr2L_21177205_21177509 0.00 1.10 0.93 1.61 0.00 0.00 0.00 3.03 1.84 0.00 2.44 2.37 0.00 0.00 2.11 0.00 0.00 1.19 0.00 2.70 0.00 0.00 1.37 0.00 0.00 0.00 1.45 2.94 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 1.54 1.20 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 1.70 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 N jcn_only_AD Lag1,RI_chrX_6153758_6153930,I_chrX_6153758_6155077,RI_chrX_6153758_6161036,I_chrX_6160907_6161036 chrX - chrX_6153758_6155077;chrX_6153758_6153930;chrX_6153758_6161036;chrX_6153758_6154193;chrX_6153758_6154358;chrX_6153758_6160439 chrX_6153758_6154631 chrX_6153658_6153757;chrX_6161037_6161136 5.13 4.21 6.33 4.81 5.88 7.10 5.98 12.08 5.13 0.00 4.48 6.88 6.53 7.91 3.50 10.30 5.30 4.16 7.99 5.41 0.00 4.95 2.31 2.82 2.69 7.74 0.00 3.85 7.61 4.07 11.81 6.67 4.87 8.23 5.23 3.31 1.95 3.91 2.93 5.46 7.98 5.67 9.56 5.43 5.26 8.87 5.05 8.00 6.29 2.55 3.40 4.42 0.00 4.45 8.37 3.90 2.62 4.92 K jcn_only_AD CG33298 chr2L + chr2L_9496256_9503592;chr2L_9495657_9503592 chr2L_9495712_9503592 chr2L_9503593_9504813;chr2L_9495488_9495656 0.00 0.00 3.23 1.69 4.35 NA 0.00 0.00 3.33 NA 4.35 0.00 5.56 0.00 0.00 0.00 2.44 0.00 0.00 0.00 4.35 9.09 NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA 9.52 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA 2.56 NA NA NA K intron_retention CG42389,I_chr2L_16622842_16634725,chr2L_16628843_16629150.0 chr2L + chr2L_16622842_16652742 chr2L_16622841_16622842;chr2L_16652742_16652743 chr2L_16622742_16622841;chr2L_16652743_16652912 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention scra,EI_chr2R_3480349_3480405 chr2R + chr2R_3477967_3478072 chr2R_3477966_3477967;chr2R_3478072_3478073 chr2R_3477722_3477966;chr2R_3478073_3478387 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention wts chr3R - chr3R_26617498_26617562 chr3R_26617497_26617498;chr3R_26617562_26617563 chr3R_26617419_26617497;chr3R_26617563_26617678 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG15439,E_chr2L_4449585_4452632,CG15440 chr2L - chr2L_4450364_4450772 chr2L_4450363_4450364;chr2L_4450772_4450773 chr2L_4449431_4450363;chr2L_4450773_4453037 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 9.68 NA NA 6.25 NA 10.53 0.00 0.00 7.69 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.00 5.41 14.29 6.25 14.29 0.00 0.00 7.69 NA 0.00 7.14 0.00 0.00 7.14 0.00 5.56 6.25 0.00 0.00 5.71 0.00 0.00 16.67 0.00 7.41 0.00 0.00 0.00 6.67 9.09 0.00 4.00 K intron_retention CG2003 chr3R + chr3R_27815249_27815312 chr3R_27815248_27815249;chr3R_27815312_27815313 chr3R_27815109_27815248;chr3R_27815313_27816636 5.41 8.51 0.00 24.24 4.76 7.46 5.26 6.45 6.42 9.09 0.00 5.15 8.89 3.92 3.12 0.00 4.00 3.77 10.81 4.88 5.88 2.78 5.88 7.69 3.33 7.32 17.65 13.04 0.00 3.64 13.56 4.55 6.67 2.78 5.41 12.50 7.32 4.65 6.56 8.70 0.00 6.14 4.44 2.94 3.28 3.28 0.00 4.92 6.19 10.00 6.35 8.33 7.14 8.82 5.80 5.00 2.78 2.20 K alternative_donor cryptocephal,I_chr2L_21311307_21311752,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21311033_21311752;chr2L_21311307_21311752;chr2L_21311215_21311752 chr2L_21311532_21311752 chr2L_21311753_21311852;chr2L_21310948_21311032 16.77 13.85 10.52 3.79 14.58 10.69 9.08 5.43 11.65 21.92 11.30 7.75 9.15 9.43 10.48 18.93 9.73 18.89 7.90 10.21 10.53 20.70 12.23 25.08 14.24 4.82 20.65 37.63 37.70 20.31 11.28 32.88 20.35 6.73 16.77 25.37 29.13 19.75 24.33 35.40 19.79 10.20 8.40 17.80 30.50 19.50 24.91 18.05 8.26 25.45 15.45 20.72 23.16 28.02 8.06 22.41 20.35 15.25 N jcn_only_AA CG30193,CG30190 chr2R + chr2R_18815153_18817321 chr2R_18815153_18816610 chr2R_18815039_18815152;chr2R_18817322_18817596 100.00 100.00 100.00 86.49 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG17737,I_chr3L_3223527_3224313,I_chr3L_3223943_3224313 chr3L + chr3L_3223928_3224313 chr3L_3223927_3223928;chr3L_3224313_3224314 chr3L_3223843_3223927;chr3L_3224314_3224413 0.10 0.10 0.00 0.20 0.31 0.32 0.26 0.17 0.12 0.00 0.00 0.22 0.00 0.50 0.11 0.30 0.17 0.00 0.00 0.11 0.13 0.00 0.08 0.21 0.45 0.00 0.17 0.72 0.29 0.00 0.00 0.00 0.15 0.19 0.00 0.15 0.00 0.35 0.20 0.23 0.00 0.14 0.17 0.00 0.00 0.00 0.08 0.00 0.28 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG9797 chr3R - chr3R_4555824_4556254 chr3R_4555824_4556088 chr3R_4555512_4555823;chr3R_4556255_4556334 100.00 100.00 100.00 98.92 100.00 100.00 100.00 98.65 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.02 100.00 98.59 98.48 100.00 100.00 95.65 100.00 100.00 100.00 99.15 100.00 100.00 100.00 100.00 98.94 99.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.19 K intron_retention l(1)G0193 chrX - chrX_7837261_7839928 chrX_7837260_7837261;chrX_7839928_7839929 chrX_7836542_7837260;chrX_7839929_7840252 0.85 0.57 1.08 1.52 1.45 0.00 2.08 0.75 1.96 1.23 2.08 1.52 0.00 0.00 0.00 0.62 0.00 0.00 1.69 1.03 0.00 0.74 1.85 0.00 0.00 0.00 0.00 1.00 0.00 1.45 0.93 0.00 0.00 1.56 1.55 0.00 0.86 0.00 0.00 0.90 2.50 0.66 1.72 0.85 0.00 1.30 0.90 2.47 1.32 0.43 1.88 1.49 0.00 0.00 1.15 0.74 0.64 1.42 K intron_retention CG18490,I_chr3L_11209088_11209685 chr3L + chr3L_11219902_11220772 chr3L_11219901_11219902;chr3L_11220772_11220773 chr3L_11219736_11219901;chr3L_11220773_11220815 7.55 9.09 11.76 18.37 NA 14.29 18.52 11.54 12.20 NA NA 7.89 NA 0.00 14.29 9.43 9.09 NA 13.64 5.26 NA 9.09 0.00 11.76 7.41 0.00 0.00 NA 3.45 18.75 0.00 5.56 7.14 7.32 0.00 7.41 11.11 7.69 10.71 11.76 6.90 8.33 6.67 12.00 8.33 6.90 10.53 12.24 10.00 7.14 6.67 5.26 0.00 0.00 6.25 0.00 0.00 5.71 K intron_retention CG18522,CG18519 chr3R - chr3R_11358911_11358968 chr3R_11358910_11358911;chr3R_11358968_11358969 chr3R_11358290_11358910;chr3R_11358969_11360784 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.81 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N multi_cassette Hr78,I_chr3L_21490089_21490390,CG33214 chr3L - chr3L_21488969_21490390 chr3L_21488969_21489520;chr3L_21489842_21489919;chr3L_21490023_21490390 chr3L_21489521_21489841;chr3L_21489920_21490022 chr3L_21488699_21488968;chr3L_21490391_21490490 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 73.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N intron_retention CG6701,RI_chr2R_9866896_9867532,noncoding_6685 chr2R - chr2R_9866924_9867532 chr2R_9866923_9866924;chr2R_9867532_9867533 chr2R_9866689_9866923;chr2R_9867533_9867623 100.00 100.00 NA 100.00 100.00 100.00 74.36 100.00 75.00 NA 100.00 73.33 100.00 100.00 NA 71.05 100.00 100.00 100.00 100.00 100.00 100.00 62.96 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 74.07 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 NA K intron_retention CG18324,I_chr2R_10068194_10068715 chr2R + chr2R_10057028_10057074 chr2R_10057027_10057028;chr2R_10057074_10057075 chr2R_10056892_10057027;chr2R_10057075_10057672 25.00 21.74 33.33 31.25 NA 18.75 23.08 33.33 21.43 NA 26.67 25.00 NA 28.57 NA 28.57 36.36 28.57 33.33 25.93 21.43 11.76 26.92 22.73 30.77 20.00 33.33 52.17 16.00 16.00 28.57 29.17 23.08 15.00 NA 35.71 9.09 27.27 32.00 14.29 20.83 28.57 NA 15.00 25.81 19.23 46.15 23.53 24.00 25.00 26.32 16.67 36.36 23.81 21.05 18.18 23.33 25.00 K alternative_acceptor CG8043,CG11755 chr3R + chr3R_4502770_4502817;chr3R_4502770_4502834;chr3R_4502770_4502810 chr3R_4502770_4502843 chr3R_4502645_4502769;chr3R_4502844_4503955 0.00 NA 10.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 10.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 14.29 NA NA 0.00 0.00 NA 0.00 NA 10.00 14.29 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 K intron_retention CG12773 chrX - chrX_1245071_1245134 chrX_1245070_1245071;chrX_1245134_1245135 chrX_1243920_1245070;chrX_1245135_1245313 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.45 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.43 0.00 0.00 0.00 0.00 7.69 0.00 6.52 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG9306,I_chr2L_13370565_13370841,I_chr2L_13370795_13370841 chr2L - chr2L_13370764_13370853 chr2L_13370764_13370841 chr2L_13370696_13370763;chr2L_13370854_13370918 100.00 100.00 99.42 100.00 100.00 99.39 100.00 100.00 100.00 100.00 100.00 99.77 100.00 100.00 98.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.26 99.32 100.00 100.00 100.00 100.00 100.00 100.00 99.72 100.00 100.00 100.00 99.82 99.34 98.54 99.49 100.00 100.00 100.00 99.76 99.82 100.00 100.00 100.00 99.75 100.00 100.00 99.56 100.00 99.77 100.00 99.36 K intron_retention debcl,I_chr2R_2539027_2539493 chr2R + chr2R_2539638_2539692 chr2R_2539637_2539638;chr2R_2539692_2539693 chr2R_2539494_2539637;chr2R_2539693_2540353 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.47 0.00 0.00 0.00 0.00 2.50 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Art3,I_chr3R_11054902_11054955 chr3R - chr3R_11054902_11054972;chr3R_11054902_11054965 chr3R_11054902_11054955 chr3R_11054802_11054901;chr3R_11054973_11055055 2.78 0.00 0.00 5.88 0.00 0.00 5.00 4.00 2.78 0.00 0.00 3.45 0.00 7.69 0.00 4.17 NA 0.00 0.00 4.17 7.14 0.00 9.09 0.00 7.69 NA 4.55 0.00 0.00 0.00 20.69 9.09 8.33 4.35 0.00 9.09 4.00 0.00 4.17 3.33 11.11 6.45 0.00 3.85 0.00 4.55 0.00 9.09 3.57 4.55 0.00 0.00 2.78 0.00 0.00 10.00 2.27 0.00 K intron_retention jim,I_chr3L_22791582_22791898 chr3L - chr3L_22791579_22791898 chr3L_22791578_22791579;chr3L_22791898_22791899 chr3L_22791482_22791578;chr3L_22791899_22791998 0.00 0.00 0.00 0.00 0.00 0.00 2.38 2.17 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 K intron_retention foi,I_chr3L_8524905_8524976 chr3L + chr3L_8521881_8523659 chr3L_8521880_8521881;chr3L_8523659_8523660 chr3L_8521860_8521880;chr3L_8523660_8524249 15.65 NA 12.00 13.64 11.76 4.76 27.27 11.90 10.87 NA 4.00 16.67 NA NA 19.05 13.79 13.04 25.00 25.00 9.09 16.67 47.62 NA NA NA 5.88 NA NA 68.00 NA 9.62 NA 17.39 25.00 NA NA NA NA NA 40.00 54.55 10.42 11.76 NA NA NA NA 31.25 14.63 NA NA NA NA NA 19.23 NA NA 30.43 K intron_retention CG32529 chrX + chrX_19765627_19765844 chrX_19765626_19765627;chrX_19765844_19765845 chrX_19762434_19765626;chrX_19765845_19766182 1.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N cassette CG14995,I_chr3L_4095875_4097205,I_chr3L_4096047_4096903 chr3L - chr3L_4096068_4097205;chr3L_4096068_4097506 chr3L_4096068_4096903;chr3L_4096979_4097205,chr3L_4096979_4097506 chr3L_4096904_4096978 chr3L_4095972_4096067;chr3L_4097507_4097804 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA 94.44 NA NA 100.00 NA NA 85.71 100.00 100.00 87.50 67.50 100.00 100.00 100.00 NA 100.00 100.00 95.45 92.86 90.00 92.86 95.45 100.00 100.00 100.00 100.00 100.00 95.24 100.00 88.89 100.00 NA 100.00 100.00 100.00 93.75 100.00 92.86 100.00 95.83 90.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG6340,I_chrX_15402291_15403750 chrX + chrX_15376571_15377231 chrX_15376570_15376571;chrX_15377231_15377232 chrX_15376446_15376570;chrX_15377232_15377453 6.06 5.00 NA 7.69 NA NA 0.00 10.00 0.00 NA NA 10.00 NA 6.25 0.00 0.00 6.67 6.67 NA 5.88 NA 5.00 12.50 7.69 NA NA 20.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA 10.53 8.00 NA 9.38 NA 0.00 0.00 0.00 NA 0.00 11.76 NA 7.69 NA NA NA 0.00 NA NA 6.45 K alternative_donor His4r chr3R + chr3R_10451640_10451747;chr3R_10451564_10451747 chr3R_10451538_10451747 chr3R_10451748_10451951;chr3R_10451469_10451537 96.78 97.80 96.99 97.71 97.40 97.80 96.01 97.30 96.78 96.77 97.67 97.87 97.10 96.60 96.31 95.35 96.64 98.23 98.15 97.40 97.31 95.74 95.08 97.12 95.45 98.09 91.89 96.00 94.63 94.52 96.88 97.52 98.61 97.49 91.67 96.08 96.72 98.90 97.62 95.62 95.33 97.79 97.58 94.70 98.29 93.06 96.43 96.00 98.04 93.50 92.19 97.56 95.88 94.29 98.04 96.60 95.00 97.07 K intron_retention His4r chr3R + chr3R_10451640_10451747 chr3R_10451639_10451640;chr3R_10451747_10451748 chr3R_10451443_10451639;chr3R_10451748_10451951 6.45 11.76 5.26 6.25 0.00 NA 18.18 2.94 9.52 NA 7.14 17.86 10.53 8.70 0.00 0.00 0.00 0.00 NA 5.88 NA 8.00 NA NA NA 10.53 20.00 NA 10.53 NA 10.00 0.00 NA 8.70 0.00 NA 14.29 NA NA 10.53 0.00 6.45 0.00 0.00 0.00 6.45 12.50 0.00 0.00 11.54 NA 14.29 NA 0.00 8.70 4.35 11.11 0.00 K alternative_donor R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8088371_8089184;chr2L_8088454_8089184 chr2L_8088517_8089184 chr2L_8089185_8089284;chr2L_8088362_8088370 7.14 NA 9.09 11.11 NA NA 15.38 7.69 7.14 NA NA 6.25 9.09 10.00 0.00 10.71 NA 16.67 8.33 4.17 16.67 NA 14.29 NA 0.00 14.29 NA NA NA NA 10.00 NA 0.00 10.00 0.00 7.14 NA NA NA 0.00 16.67 6.25 0.00 0.00 NA 0.00 NA NA 3.85 NA 0.00 NA 0.00 NA 0.00 14.29 NA NA K intron_retention CG7120,I_chr3L_8393044_8393104,I_chr3L_8393044_8393116 chr3L + chr3L_8393044_8393181 chr3L_8393043_8393044;chr3L_8393181_8393182 chr3L_8392944_8393043;chr3L_8393182_8393204 4.76 NA NA NA NA NA 11.11 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 46.15 4.76 5.00 NA NA 10.53 NA 50.00 NA NA NA NA NA NA 12.50 0.00 NA 0.00 0.00 NA 12.50 NA NA NA 11.76 NA NA 13.64 NA NA NA NA NA NA NA 0.00 0.00 K multi_cassette Gel,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_61047_62274 chr3R_61047_61809;chr3R_61871_61960;chr3R_62004_62274 chr3R_61810_61870;chr3R_61961_62003 chr3R_61015_61046;chr3R_62275_62526 0.16 0.25 0.52 0.17 0.00 0.38 0.00 0.11 0.34 0.00 0.44 0.12 0.14 0.00 0.00 0.40 0.00 0.28 0.20 0.16 0.33 0.00 0.21 0.24 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.20 0.38 0.00 0.32 0.36 0.43 0.39 0.00 0.00 0.26 0.32 0.21 0.00 0.27 0.00 0.27 0.12 0.00 0.24 0.76 0.00 0.00 0.21 0.00 0.00 0.16 K intron_retention CG2694,I_chrX_2609471_2609546,RI_chrX_2622297_2622430,RI_chrX_2622435_2622577 chrX + chrX_2609314_2609370 chrX_2609313_2609314;chrX_2609370_2609371 chrX_2608812_2609313;chrX_2609371_2609466 2.27 NA NA 36.36 NA NA 0.00 8.11 2.27 NA 15.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 15.38 NA 0.00 0.00 NA NA 11.11 NA NA 12.50 0.00 NA 0.00 4.76 0.00 23.53 2.94 NA 3.70 6.67 NA 5.00 NA NA NA NA 0.00 NA 9.52 7.14 11.11 NA NA NA 0.00 NA 0.00 0.00 K alternative_acceptor tefu,I_chr3R_11060517_11060585 chr3R - chr3R_11060517_11060585 chr3R_11060522_11060585 chr3R_11060586_11060685;chr3R_11060417_11060516 97.09 94.12 100.00 96.55 92.31 100.00 96.88 97.30 96.77 NA 100.00 96.55 100.00 100.00 100.00 96.30 95.24 100.00 100.00 100.00 100.00 100.00 93.75 95.45 100.00 100.00 88.89 NA NA 100.00 95.65 87.50 100.00 94.12 77.78 100.00 90.91 100.00 100.00 95.24 NA 97.67 100.00 NA NA 91.67 92.86 100.00 96.30 100.00 100.00 90.91 90.00 NA 96.30 90.00 94.12 100.00 K intron_retention fwd,I_chr3L_310787_310918,RI_chr3L_319514_319746 chr3L - chr3L_306770_306828 chr3L_306769_306770;chr3L_306828_306829 chr3L_306605_306769;chr3L_306829_306917 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 2.86 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.92 0.00 6.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Marf,I_chrX_6263726_6263783 chrX + chrX_6262091_6262558 chrX_6262377_6262558 chrX_6262559_6263485 0.00 0.00 0.00 1.23 0.00 0.00 1.01 0.00 0.00 1.89 0.00 2.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 1.82 0.93 0.85 0.00 0.00 0.00 0.00 1.01 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 3.57 0.00 1.56 0.00 0.00 0.00 0.00 K jcn_only_AD Cyp1,RI_chrX_16212641_16213159,RI_chrX_16212641_16213308,I_chrX_16212641_16213680,I_chrX_16212641_16213960 chrX - chrX_16212641_16213308;chrX_16212641_16214111 chrX_16212641_16213960 chrX_16212541_16212640;chrX_16214112_16214235 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.12 0.00 0.00 0.12 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.29 0.00 0.11 0.07 0.00 0.00 0.06 0.00 0.00 0.04 0.00 0.05 0.07 0.03 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.08 K intron_retention RpS20,snoRNA:Psi28S-2562 chr3R + chr3R_16648614_16648853 chr3R_16648613_16648614;chr3R_16648853_16648854 chr3R_16648524_16648613;chr3R_16648854_16649080 0.00 0.00 0.00 0.00 0.00 0.08 0.02 0.06 0.03 0.00 0.00 0.03 0.03 0.06 0.04 0.04 0.04 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.31 0.11 0.00 0.04 0.00 0.00 0.07 0.07 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.02 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 K mutually_exclusive RpS11,I_chr2R_8087545_8087625,I_chr2R_8087545_8087698,I_chr2R_8087747_8088193 chr2R - chr2R_8087545_8087932,chr2R_8088056_8088279 chr2R_8087545_8087620,chr2R_8087747_8088279 chr2R_8087933_8088055 chr2R_8087621_8087746 chr2R_8087476_8087544;chr2R_8088280_8088293 99.96 99.98 99.97 99.97 99.94 99.94 99.98 99.98 99.96 99.96 99.97 99.99 99.97 99.96 99.98 99.97 99.93 99.97 99.97 99.99 99.97 99.96 99.94 99.96 99.93 99.97 99.96 99.93 99.91 99.97 99.91 99.94 99.88 99.98 99.93 99.97 99.98 99.96 99.98 99.94 99.93 99.97 99.89 99.98 99.96 99.92 99.98 99.86 99.95 99.93 99.98 99.96 99.96 99.97 99.95 99.97 99.99 99.94 K multi_cassette noncoding_24933,sw chrX - chrX_20101671_20105848 chrX_20101671_20103190;chrX_20103239_20104496;chrX_20104518_20105401;chrX_20105435_20105848 chrX_20103191_20103238;chrX_20104497_20104517;chrX_20105402_20105434 chrX_20101515_20101670;chrX_20105849_20105976 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention cryptocephal,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21312209_21312283 chr2L_21312208_21312209;chr2L_21312283_21312284 chr2L_21312125_21312208;chr2L_21312284_21312647 68.19 NA NA 72.73 NA NA 75.00 63.64 63.64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA 54.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Vps13,I_chr2R_3464510_3464571 chr2R + chr2R_3454389_3454650 chr2R_3454505_3454650 chr2R_3454651_3454869;chr2R_3454371_3454388 4.45 NA NA 11.54 NA NA 6.67 6.06 5.41 NA NA 8.82 NA NA 0.00 13.79 NA 8.70 2.56 3.85 NA 0.00 0.00 NA NA NA NA NA 4.55 9.09 3.57 NA 4.35 9.09 NA NA 7.14 NA NA 1.85 NA 0.00 NA 0.00 NA NA NA 3.64 8.16 NA NA NA NA NA 2.86 NA NA NA K alternative_donor CG14767,RI_chr2R_4610372_4610761 chr2R - chr2R_4607290_4607359 chr2R_4607290_4607347 chr2R_4607151_4607289;chr2R_4607360_4607537 48.99 50.78 47.32 48.23 44.19 40.81 50.39 49.57 46.36 55.00 48.74 47.40 50.97 43.64 48.30 45.88 45.99 53.23 53.60 46.46 48.15 49.90 53.65 50.79 49.81 50.91 45.81 44.00 48.40 51.67 51.27 48.35 52.96 52.03 54.50 43.19 48.92 53.01 53.66 54.76 48.39 45.92 47.12 59.33 48.85 48.99 57.84 49.14 46.48 51.80 52.36 45.81 51.65 47.41 47.27 47.74 51.77 53.65 K cassette unc-104,I_chr2R_12643956_12644305,RI_chr2R_12650846_12659758 chr2R - chr2R_12648220_12649172 chr2R_12648220_12648910;chr2R_12648953_12649172 chr2R_12648911_12648952 chr2R_12648103_12648219;chr2R_12649173_12649312 0.00 NA NA 4.76 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 4.35 0.00 5.26 3.70 NA NA NA 0.00 NA 0.00 0.00 0.00 NA 4.35 0.00 NA NA 0.00 NA NA 2.94 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K alternative_last_exon CG33158,chr3L_16432902_16433603.0,RI_chr3L_16482628_16484609 chr3L + chr3L_16415747_16478536 chr3L_16415747_16441539 chr3L_16478537_16478721 chr3L_16441540_16441608 chr3L_16415633_16415746 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ligatin,Slbp chr3R - chr3R_24976954_24977011 chr3R_24976953_24976954;chr3R_24977011_24977012 chr3R_24975609_24976953;chr3R_24977012_24977494 0.00 0.00 0.00 3.51 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 1.75 1.56 0.00 0.00 0.00 3.57 3.53 0.70 0.00 0.00 0.00 1.80 0.00 0.00 1.37 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 K intron_retention Spx chrX + chrX_6149978_6150051 chrX_6149977_6149978;chrX_6150051_6150052 chrX_6149869_6149977;chrX_6150052_6150135 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 5.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention zip,I_chr2R_20878796_20879147 chr2R - chr2R_20898140_20898622 chr2R_20898139_20898140;chr2R_20898622_20898623 chr2R_20897903_20898139;chr2R_20898623_20898731 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA 100.00 NA NA NA NA 100.00 NA 100.00 90.91 NA NA 100.00 100.00 NA 100.00 100.00 NA NA 88.89 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA K multi_cassette Nipped-B,R_chr2R_590026_590111,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_588767_607274 chr2R_588767_599318;chr2R_599551_599605;chr2R_600281_607274 chr2R_599319_599550;chr2R_599606_600280 chr2R_588445_588766;chr2R_607275_607374 97.78 100.00 100.00 90.62 100.00 95.00 100.00 98.25 98.48 100.00 100.00 96.30 100.00 96.30 100.00 93.10 100.00 95.24 100.00 95.74 100.00 94.44 92.59 94.44 93.75 100.00 95.24 93.75 88.24 93.75 97.78 100.00 100.00 96.67 94.44 94.74 93.33 100.00 92.31 96.15 90.00 96.00 100.00 96.43 100.00 100.00 100.00 96.77 98.36 100.00 100.00 100.00 100.00 80.00 96.30 100.00 100.00 94.12 K jcn_only_AD slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,RI_chr2R_20289332_20289739,I_chr2R_20289332_20289846,I_chr2R_20289332_20290093 chr2R - chr2R_20289332_20290083;chr2R_20289332_20289739;chr2R_20289332_20289846 chr2R_20289332_20290093 chr2R_20289232_20289331;chr2R_20290094_20290193 0.00 NA NA 8.33 NA 0.00 0.00 4.88 0.00 NA NA 1.79 0.00 2.63 3.33 0.00 5.26 0.00 0.00 2.13 0.00 3.23 0.00 3.57 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 4.08 NA 0.00 7.41 4.76 NA 0.00 4.76 0.00 0.00 NA 0.00 0.00 0.00 NA 3.12 NA NA 3.23 K intron_retention ImpL2,I_chr3L_4225707_4225972,I_chr3L_4225707_4226245,I_chr3L_4225707_4226564,I_chr3L_4226910_4226993 chr3L - chr3L_4225707_4226573 chr3L_4225706_4225707;chr3L_4226573_4226574 chr3L_4225607_4225706;chr3L_4226574_4226664 2.78 2.90 2.23 3.02 0.55 2.91 2.65 2.26 2.77 2.35 1.88 2.70 2.40 3.14 3.52 2.69 1.90 5.10 3.11 2.00 2.69 2.05 4.87 4.15 3.42 3.54 4.21 5.43 4.27 3.19 1.41 1.86 1.75 3.12 4.08 4.15 3.52 4.02 2.62 2.99 2.46 2.26 2.68 2.10 1.25 2.63 3.63 1.67 3.11 4.49 3.46 3.14 4.35 2.78 0.88 3.57 2.72 1.90 K intron_retention CG17746,I_chr3L_3238983_3250343 chr3L - chr3L_3238073_3238611 chr3L_3238072_3238073;chr3L_3238611_3238612 chr3L_3237742_3238072;chr3L_3238612_3238982 0.83 0.00 0.00 0.00 0.00 1.45 1.69 0.59 2.72 1.94 0.00 0.83 1.20 0.00 0.00 0.00 0.00 2.44 1.55 1.36 0.00 2.34 0.88 2.80 3.39 0.00 1.05 4.26 0.96 0.00 0.00 0.00 0.00 0.60 0.00 1.54 2.66 2.88 2.82 1.71 1.56 0.38 0.00 0.71 0.66 0.00 0.00 0.00 1.88 1.23 2.88 4.05 0.00 2.38 1.40 0.00 0.90 0.24 K intron_retention SC35,I_chr2L_12432222_12432308,psnoRNA:SC35-a,psnoRNA:SC35-b chr2L - chr2L_12432724_12433578 chr2L_12432723_12432724;chr2L_12433578_12433579 chr2L_12432309_12432723;chr2L_12433579_12433709 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.59 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive betaTub97EF chr3R - chr3R_23794914_23795381,chr3R_23795550_23798642 chr3R_23794914_23795104,chr3R_23795273_23798642 chr3R_23795382_23795549 chr3R_23795105_23795272 chr3R_23794649_23794913;chr3R_23798643_23798872 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.68 0.34 0.00 0.58 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.52 0.00 0.36 0.00 0.00 0.42 0.83 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.34 0.37 0.30 0.00 0.46 0.00 0.50 0.39 0.00 0.00 K jcn_only_AD kuz,F_chr2L_13635998_13637287,I_chr2L_13636762_13637287 chr2L + chr2L_13636762_13637287;chr2L_13636002_13637287 chr2L_13636844_13637287 chr2L_13637288_13637387 22.77 20.37 39.39 70.43 14.81 11.11 51.61 23.17 29.59 33.33 47.06 64.50 15.25 36.36 35.53 47.79 33.33 53.33 28.57 31.32 50.54 19.61 15.34 20.33 27.17 54.08 19.59 21.92 22.77 14.58 30.99 22.03 32.54 20.16 21.98 32.73 20.34 14.41 18.40 16.19 24.68 22.80 28.99 14.29 37.63 28.17 15.49 23.00 21.21 15.48 15.69 19.44 12.64 13.85 29.85 11.11 21.62 19.05 K intron_retention gish,I_chr3R_12125412_12126290 chr3R + chr3R_12124273_12125312 chr3R_12124272_12124273;chr3R_12125312_12125313 chr3R_12124192_12124272;chr3R_12125313_12125411 9.09 7.14 0.00 26.32 NA NA 39.13 11.11 22.58 NA NA 20.59 NA NA 16.67 14.29 NA NA NA 6.10 NA NA 15.79 8.70 NA NA 11.11 43.75 0.00 NA 14.29 0.00 4.35 16.67 5.88 0.00 14.29 20.00 10.00 6.06 NA 13.33 15.38 0.00 0.00 6.67 0.00 9.09 9.68 0.00 9.09 13.33 6.67 NA 9.09 0.00 6.45 0.00 K intron_retention mth chr3L - chr3L_344539_344614 chr3L_344538_344539;chr3L_344614_344615 chr3L_344367_344538;chr3L_344615_344620 15.00 7.14 9.09 20.83 7.69 25.00 8.33 30.30 20.83 NA 11.11 16.28 40.00 17.65 23.53 22.58 20.83 18.18 31.03 17.65 16.67 NA 7.69 12.50 0.00 18.75 8.33 NA NA 18.75 15.38 NA 9.09 20.00 0.00 NA 8.70 9.52 0.00 14.29 4.76 17.50 40.00 NA NA 0.00 15.00 NA 19.44 6.90 10.53 0.00 NA NA 18.52 11.11 9.09 NA K intron_retention Dp,I_chr2R_9111166_9112971,REI_chr2R_9113257_9113316 chr2R + chr2R_9113130_9113195 chr2R_9113129_9113130;chr2R_9113195_9113196 chr2R_9112972_9113129;chr2R_9113196_9113256 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 1.00 2.50 1.32 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 K intron_retention c11_1 chrX - chrX_9172223_9172284 chrX_9172222_9172223;chrX_9172284_9172285 chrX_9171748_9172222;chrX_9172285_9172930 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 4.69 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pp4-19C,I_chrX_20293932_20294672,RI_chrX_20293980_20294069,REI_chrX_20294004_20294672 chrX - chrX_20293980_20294672 chrX_20293979_20293980;chrX_20294672_20294673 chrX_20293904_20293979;chrX_20294673_20294772 4.78 5.08 6.00 4.85 3.45 4.04 8.82 7.37 3.47 6.56 11.48 3.18 4.00 2.90 4.55 2.20 8.77 11.11 3.49 3.90 5.26 3.95 6.63 6.45 7.53 4.44 3.33 9.43 6.90 6.06 3.30 7.84 7.04 4.10 4.35 1.98 2.96 5.43 3.17 4.78 3.77 3.77 3.51 3.94 5.62 5.71 6.90 3.74 3.95 6.17 3.50 5.63 5.19 4.21 4.67 5.43 6.06 10.91 K alternative_donor BM-40-SPARC,I_chr3R_22696095_22696231,I_chr3R_22696095_22696291,I_chr3R_22696095_22697413 chr3R - chr3R_22696095_22697647;chr3R_22696095_22697413;chr3R_22696095_22696231 chr3R_22696095_22696291 chr3R_22695995_22696094;chr3R_22697648_22697767 0.18 0.16 0.11 0.15 0.10 0.15 0.23 0.08 0.22 0.24 0.22 0.14 0.16 0.17 0.14 0.26 0.17 0.15 0.19 0.18 0.08 0.04 0.20 0.28 0.40 0.16 0.33 0.12 0.28 0.12 0.32 0.29 0.18 0.10 0.09 0.47 0.10 0.27 0.21 0.49 0.21 0.21 0.25 0.09 0.21 0.34 0.11 0.89 0.22 0.11 0.16 0.20 0.09 0.09 0.16 0.19 0.09 0.24 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2389073;chrX_2389272_2390808;chrX_2390959_2391350;chrX_2391522_2395659 chrX_2389074_2389271;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2395660_2395759 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K alternative_acceptor dgt6 chr3R - chr3R_24954603_24954668 chr3R_24954619_24954668 chr3R_24954669_24955189;chr3R_24954306_24954602 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 1.82 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG2224 chr3R - chr3R_26283127_26283184 chr3R_26283140_26283184 chr3R_26283185_26283500;chr3R_26283014_26283126 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 NA 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 K intron_retention Vha100-1,I_chr3R_24958227_24960770,RI_chr3R_24959152_24959582,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24958227_24958993 chr3R_24958226_24958227;chr3R_24958993_24958994 chr3R_24958127_24958226;chr3R_24958994_24959059 7.59 3.64 10.91 13.64 0.00 10.34 14.75 10.71 17.86 12.50 15.15 9.86 7.89 10.81 8.16 4.41 6.06 15.15 4.44 13.24 9.52 15.38 7.55 7.04 2.63 3.77 6.17 4.55 4.00 5.88 8.22 4.65 7.46 14.89 7.27 13.33 7.69 4.41 5.26 8.08 4.76 9.30 5.88 7.04 10.00 7.59 7.84 8.57 10.39 3.57 8.22 3.77 6.25 6.56 18.37 0.00 1.59 1.69 K alternative_donor CG15601 chrX + chrX_15605352_15605544 chrX_15605490_15605544 chrX_15605545_15606219;chrX_15605050_15605351 88.89 77.78 90.00 91.67 87.50 88.89 76.92 73.33 100.00 100.00 100.00 92.31 85.71 80.00 85.71 90.91 100.00 87.50 90.91 92.86 83.33 100.00 81.82 78.57 NA 100.00 85.71 83.33 87.50 87.50 85.71 100.00 90.00 91.67 100.00 NA 100.00 83.33 71.43 90.91 63.64 100.00 100.00 87.50 100.00 75.00 100.00 85.71 93.33 92.31 88.89 NA 80.00 100.00 100.00 88.89 85.71 81.82 K intron_retention CG17294,Rcd4 chr2L + chr2L_8377522_8377576 chr2L_8377521_8377522;chr2L_8377576_8377577 chr2L_8377225_8377521;chr2L_8377577_8377623 6.67 0.00 15.38 13.79 NA 0.00 9.80 8.93 8.16 6.67 4.17 9.80 0.00 5.56 0.00 8.00 10.00 10.71 6.67 7.14 0.00 0.00 15.38 7.41 12.50 22.22 27.50 17.07 14.29 0.00 14.29 0.00 NA 0.00 0.00 NA 7.41 0.00 3.23 5.13 18.52 14.58 0.00 2.17 0.00 14.63 15.38 0.00 9.30 4.17 13.33 6.45 NA 3.45 0.00 0.00 16.22 0.00 K cassette boi,I_chrX_2363445_2363896 chrX - chrX_2339627_2340443 chrX_2339627_2339893;chrX_2340215_2340443 chrX_2339894_2340214 chrX_2338205_2339626;chrX_2340444_2340512 1.26 0.00 1.54 0.81 0.00 1.56 1.54 0.71 0.65 3.92 0.00 1.52 0.00 0.00 1.28 4.00 0.00 0.00 0.00 0.61 0.00 2.38 1.85 4.26 0.00 0.00 0.00 0.00 3.23 0.00 1.89 0.00 2.27 0.87 0.00 0.00 2.27 2.27 2.90 1.74 1.64 1.26 1.75 2.38 2.27 0.83 2.86 0.98 1.45 0.00 3.23 0.00 6.25 2.78 0.00 2.44 0.00 1.47 K jcn_only_AD CG4829,I_chrX_16717240_16717547 chrX + chrX_16711038_16716589 chrX_16711168_16716589 chrX_16716590_16716805;chrX_16710951_16711037 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 98.36 98.51 100.00 98.04 100.00 99.05 100.00 100.00 100.00 100.00 95.65 100.00 100.00 NA NA 100.00 100.00 100.00 92.59 100.00 96.67 NA 100.00 NA NA 95.24 100.00 99.01 98.82 96.15 90.48 98.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.72 K alternative_donor CG17883,I_chr2R_560147_560511,I_chr2R_560547_560618 chr2R + chr2R_560568_560618;chr2R_560547_560618;chr2R_560565_560618 chr2R_560147_560618 chr2R_560619_560642;chr2R_560047_560146 6.90 6.82 8.16 11.36 6.45 8.11 1.01 1.98 9.17 19.05 11.11 8.64 3.70 2.08 8.51 3.37 10.91 7.32 7.25 3.74 6.90 3.12 8.00 6.67 11.54 11.11 14.89 6.90 3.33 5.26 10.91 2.50 3.03 8.57 9.09 0.00 8.82 0.00 12.90 1.49 3.23 7.06 7.55 6.82 2.70 3.08 6.67 4.17 8.18 15.22 4.08 11.11 2.94 8.33 7.58 6.00 6.25 4.60 K intron_retention CG41099,I_chr3RHet_1688505_1705884,RI_chr3RHet_1703294_1705884 chr3RHet - chr3RHet_1705816_1705884 chr3RHet_1705815_1705816;chr3RHet_1705884_1705885 chr3RHet_1705737_1705815;chr3RHet_1705885_1705984 14.29 NA 25.00 26.09 NA NA NA NA 46.15 NA NA 11.76 22.73 0.00 NA 14.29 NA NA 0.00 13.79 NA NA NA NA NA NA NA NA NA NA 7.14 NA NA 11.54 NA NA NA NA NA 15.38 NA 30.00 NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA 12.20 K jcn_only_AD CG1640,RI_chrX_13265127_13267895,I_chrX_13265553_13267895,I_chrX_13265618_13267895,RI_chrX_13266680_13267895,RI_chrX_13267529_13267895,I_chrX_13271541_13271890 chrX + chrX_13265560_13267895;chrX_13265401_13267895;chrX_13265248_13267895;chrX_13265094_13267895 chrX_13265295_13267895 chrX_13267896_13267973;chrX_13265065_13265093 30.16 38.89 33.85 38.67 43.86 42.22 38.18 30.14 39.47 22.86 42.22 32.89 20.69 33.33 32.08 24.44 43.18 29.41 40.74 29.35 33.33 18.18 31.58 32.73 40.62 29.27 30.16 22.58 20.97 26.23 48.33 11.63 17.78 32.86 9.52 39.47 25.58 23.88 26.67 23.23 23.68 39.76 36.36 31.25 18.18 30.88 42.11 15.38 44.44 24.49 30.30 20.45 30.00 29.17 44.64 29.27 24.32 16.51 K alternative_acceptor tay,I_chrX_15779977_15780538,RI_chrX_15780874_15781045,I_chrX_15783766_15785978 chrX - chrX_15777398_15777465 chrX_15777401_15777465 chrX_15777466_15777513;chrX_15777227_15777397 72.08 NA 57.14 83.33 NA 66.67 66.67 76.92 77.78 NA 75.00 58.33 77.78 80.00 68.75 71.43 NA NA NA 70.59 NA 62.50 76.92 66.67 55.56 88.89 NA NA NA 63.64 72.73 NA 70.00 77.78 NA NA 60.00 NA NA 87.50 NA 92.31 NA NA NA NA NA NA 66.67 NA 88.89 NA NA NA 84.62 NA NA NA K alternative_donor CG14476,I_chrX_21474758_21476200,I_chrX_21475620_21475965 chrX - chrX_21475620_21476200;chrX_21475620_21476104 chrX_21475620_21476178 chrX_21475520_21475619;chrX_21476201_21476209 4.17 2.78 8.00 6.25 4.17 4.41 7.69 0.81 4.46 0.00 7.14 2.46 3.09 4.76 9.38 7.23 4.55 2.56 3.90 4.82 5.88 2.86 1.85 0.00 7.14 7.81 0.00 4.17 10.00 NA 2.99 NA NA 3.66 4.55 9.09 2.33 3.70 0.00 5.41 NA 5.19 6.00 6.06 NA 0.00 0.00 NA 4.17 2.38 5.88 2.50 5.00 0.00 2.27 0.00 0.00 0.00 K intron_retention CG4290,RI_chrX_1954878_1955077,I_chrX_1962457_1964222 chrX - chrX_1951801_1951861 chrX_1951800_1951801;chrX_1951861_1951862 chrX_1950153_1951800;chrX_1951862_1951956 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention lt,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22831820_22831885 chr2L_22831819_22831820;chr2L_22831885_22831886 chr2L_22831754_22831819;chr2L_22831886_22832028 100.00 100.00 100.00 97.62 100.00 100.00 99.17 99.26 99.30 100.00 100.00 99.00 100.00 100.00 98.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.36 100.00 94.12 97.30 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 98.04 98.63 100.00 K intron_retention Dscam,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3254133_3255892 chr2R_3254132_3254133;chr2R_3255892_3255893 chr2R_3253971_3254132;chr2R_3255893_3255920 67.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 61.54 78.57 NA 47.37 NA NA NA NA NA NA NA NA NA NA NA 72.73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Sema-1b,RI_chr2R_13565425_13565874 chr2R - chr2R_13566288_13566564 chr2R_13566287_13566288;chr2R_13566564_13566565 chr2R_13565777_13566287;chr2R_13566565_13566646 1.61 NA NA 5.26 NA 0.00 5.56 7.32 4.76 NA NA 0.00 0.00 0.00 0.00 3.23 0.00 NA 0.00 0.00 NA NA 14.29 NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 11.76 NA NA NA 13.33 NA 5.71 4.76 NA NA NA NA 12.50 4.88 NA NA NA NA NA 0.00 NA NA NA K intron_retention Oatp74D,I_chr3L_17500359_17500724 chr3L + chr3L_17503429_17503490 chr3L_17503428_17503429;chr3L_17503490_17503491 chr3L_17503244_17503428;chr3L_17503491_17503634 0.00 0.00 1.25 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 1.15 9.09 0.00 0.00 0.00 0.00 0.00 1.80 0.00 0.00 0.85 0.00 0.00 0.00 0.00 2.52 0.00 0.00 0.00 2.00 0.00 0.00 0.59 2.63 0.00 0.00 0.00 0.00 1.32 0.00 1.25 0.00 K intron_retention psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6500437_6500484 chr2R_6500436_6500437;chr2R_6500484_6500485 chr2R_6500242_6500436;chr2R_6500485_6500880 100.00 100.00 97.83 98.44 100.00 100.00 100.00 100.00 98.99 100.00 100.00 98.90 96.67 100.00 98.11 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 98.08 100.00 100.00 98.82 98.70 97.22 100.00 100.00 97.37 100.00 100.00 98.04 99.04 97.44 100.00 100.00 100.00 100.00 100.00 98.80 100.00 98.00 100.00 97.50 100.00 98.28 97.22 100.00 100.00 K cassette MRP,F_chr2L_12727117_12736035 chr2L + chr2L_12727117_12737958 chr2L_12727117_12737397;chr2L_12737619_12737958 chr2L_12737398_12737618 chr2L_12727017_12727116;chr2L_12737959_12738176 46.77 52.00 59.02 45.90 64.71 70.21 54.37 59.04 59.05 31.25 47.06 66.67 53.85 69.57 59.02 66.27 54.00 51.11 54.00 77.78 59.57 7.14 43.18 38.89 34.44 52.00 35.36 20.45 18.32 39.50 43.68 41.07 31.50 58.70 37.33 21.50 41.73 35.90 40.52 43.20 46.77 61.00 56.25 37.02 42.47 51.90 43.48 40.82 65.17 35.46 35.68 44.78 56.94 41.67 64.91 34.69 66.67 64.10 K intron_retention I_chr2L_11009331_11009442,dUTPase,I_chr2L_11011380_11011453 chr2L + chr2L_11011380_11011471 chr2L_11011379_11011380;chr2L_11011471_11011472 chr2L_11011335_11011379;chr2L_11011472_11011553 52.54 59.70 47.40 61.37 40.56 51.68 47.74 39.91 44.12 52.98 47.06 50.00 45.81 47.44 47.71 51.10 47.06 45.90 43.59 50.25 46.86 56.58 66.80 58.85 68.33 73.82 79.90 68.35 75.21 66.35 50.34 53.92 52.54 48.21 67.54 63.37 55.84 57.51 56.69 59.36 74.47 46.83 46.45 71.09 47.89 63.64 61.24 63.64 49.31 49.27 72.07 58.13 52.05 65.26 48.51 59.73 49.19 48.84 K intron_retention CG15221 chrX + chrX_11628745_11628816 chrX_11628744_11628745;chrX_11628816_11628817 chrX_11628217_11628744;chrX_11628817_11629473 0.00 1.33 0.00 4.00 0.00 4.00 0.00 1.68 1.80 0.00 0.00 1.40 3.12 0.00 1.56 2.99 0.00 0.00 0.00 0.00 0.00 2.78 1.02 1.35 0.00 0.00 2.22 0.00 1.28 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.57 0.00 0.00 4.17 0.00 0.00 1.19 0.00 0.00 0.00 K intron_retention CG9684 chr3R - chr3R_4186465_4186521 chr3R_4186464_4186465;chr3R_4186521_4186522 chr3R_4186286_4186464;chr3R_4186522_4187403 0.00 0.00 0.00 22.22 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 8.89 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 2.63 NA NA NA NA NA NA NA 3.33 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA NA K alternative_acceptor CG14235,noncoding_24847,CG18809,noncoding_24848 chrX - chrX_19635236_19638294;chrX_19635199_19638294 chrX_19635202_19638294 chrX_19638295_19638317;chrX_19634765_19635198 39.75 38.91 39.72 41.09 38.03 36.13 40.32 36.78 38.06 42.86 37.87 40.27 38.25 39.23 34.56 41.69 41.01 36.26 39.79 40.07 36.15 42.37 40.67 38.97 41.38 40.38 35.82 38.52 47.44 37.69 42.49 35.26 53.62 39.04 44.09 45.76 39.75 33.50 38.41 35.59 46.25 36.55 42.63 40.17 43.36 45.83 38.49 43.86 39.63 43.35 38.41 42.46 39.39 40.00 43.04 35.14 38.28 41.71 K intron_retention nrv2,I_chr2L_6791842_6794492,I_chr2L_6793397_6794492,I_chr2L_6793405_6793916,I_chr2L_6793405_6794499,I_chr2L_6793684_6794492 chr2L - chr2L_6793405_6794492 chr2L_6793404_6793405;chr2L_6794492_6794493 chr2L_6793305_6793404;chr2L_6794493_6794592 0.00 0.00 0.00 0.00 0.00 0.00 7.14 2.56 5.71 0.00 NA 2.94 0.00 0.00 0.00 3.03 5.56 3.70 0.00 2.50 0.00 0.00 4.17 4.26 0.00 0.00 6.06 NA 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 3.61 6.45 1.69 4.00 0.00 0.00 3.28 2.50 2.44 1.41 0.00 0.00 0.00 0.00 0.00 0.00 2.50 3.92 7.27 K intron_retention CG10103,noncoding_10997 chr3L - chr3L_6748224_6748519 chr3L_6748223_6748224;chr3L_6748519_6748520 chr3L_6748173_6748223;chr3L_6748520_6749258 8.51 9.84 12.33 15.94 14.29 8.77 14.06 12.50 19.19 3.51 8.51 7.87 20.51 15.38 8.54 16.67 11.67 3.17 13.21 6.36 9.46 3.57 11.54 7.02 3.85 8.77 10.39 12.90 5.00 4.48 14.75 7.14 2.94 9.38 5.56 8.00 5.80 11.11 7.79 10.81 2.94 10.66 9.30 7.32 4.13 5.79 5.26 6.00 14.00 4.12 13.21 5.00 5.66 7.58 7.79 10.42 5.95 4.10 K intron_retention gammaTub23C,CG3165 chr2L + chr2L_2973108_2973165 chr2L_2973107_2973108;chr2L_2973165_2973166 chr2L_2972977_2973107;chr2L_2973166_2973368 0.00 0.00 0.00 7.46 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 1.52 2.38 9.52 3.64 5.71 6.67 0.00 9.09 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.98 0.00 6.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3860,RI_chr2R_19882285_19882350 chr2R - chr2R_19882443_19882498 chr2R_19882442_19882443;chr2R_19882498_19882499 chr2R_19882351_19882442;chr2R_19882499_19882557 100.00 93.33 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 96.97 100.00 94.12 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 91.67 100.00 100.00 91.67 92.86 95.45 NA 100.00 92.86 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Myo61F,mtacp1,I_chr3L_1330291_1330865,I_chr3L_1330291_1331279,RI_chr3L_1330929_1331041,l(3)02640 chr3L + chr3L_1330965_1331279 chr3L_1330964_1330965;chr3L_1331279_1331280 chr3L_1330866_1330964;chr3L_1331280_1331379 1.75 1.74 2.92 0.20 2.04 2.05 1.28 1.39 1.58 0.00 3.09 1.88 1.18 1.85 0.76 2.16 0.66 1.91 2.82 2.42 2.86 4.35 1.75 1.02 1.20 2.51 2.59 2.89 1.21 1.54 1.89 3.80 1.52 3.12 2.17 1.23 2.15 0.95 2.16 2.44 1.81 2.14 3.08 0.00 1.62 2.04 1.05 0.91 1.51 0.80 1.89 1.55 1.69 0.88 0.89 1.47 1.71 3.20 K intron_retention CHOp24,CG3568 chrX + chrX_4435178_4435249 chrX_4435177_4435178;chrX_4435249_4435250 chrX_4434950_4435177;chrX_4435250_4435584 0.00 0.00 0.00 0.88 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 1.08 0.49 0.00 0.89 0.00 0.48 0.00 1.08 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Gos28,CG31231 chr3R + chr3R_14489790_14490330 chr3R_14489789_14489790;chr3R_14490330_14490331 chr3R_14489605_14489789;chr3R_14490331_14490719 13.21 12.16 18.18 12.00 17.86 21.43 24.32 17.65 16.50 15.56 10.87 27.16 57.69 20.00 15.00 13.21 17.02 17.50 12.50 17.53 15.00 9.38 8.18 8.47 8.00 16.28 16.19 14.29 17.00 8.57 23.08 12.09 9.20 18.57 8.45 13.04 14.75 13.58 11.40 10.34 11.00 18.95 18.00 9.30 12.61 12.78 8.65 8.13 13.70 7.69 9.18 21.28 8.82 10.71 16.07 9.17 9.76 7.41 K intron_retention CG7861 chr2R + chr2R_1930529_1930597 chr2R_1930528_1930529;chr2R_1930597_1930598 chr2R_1930214_1930528;chr2R_1930598_1931070 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention trc,I_chr3L_19826244_19826323 chr3L - chr3L_19824416_19825124 chr3L_19824415_19824416;chr3L_19825124_19825125 chr3L_19824347_19824415;chr3L_19825125_19825270 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG1646,RI_chr3R_24638061_24638116,RI_chr3R_24638209_24638280,I_chr3R_24641816_24641874 chr3R + chr3R_24637877_24637948;chr3R_24637877_24637958 chr3R_24637877_24638116 chr3R_24637841_24637876;chr3R_24638117_24638208 91.94 88.89 87.67 87.74 92.73 93.88 78.85 87.67 92.68 96.23 90.16 94.78 85.00 87.76 91.89 90.00 90.00 93.94 91.94 94.19 93.33 86.44 87.50 87.69 87.76 82.89 84.09 86.11 93.98 96.51 87.91 97.65 95.57 91.76 92.00 76.79 94.64 91.94 91.57 93.69 96.43 92.86 91.49 93.33 93.10 97.33 93.75 97.59 93.15 94.59 88.71 91.14 93.75 93.75 93.62 91.11 89.58 98.15 K jcn_only_AA rgn chr3L + chr3L_21413463_21413564 chr3L_21413463_21413540 chr3L_21413351_21413462;chr3L_21413565_21413789 14.29 6.67 7.69 41.67 10.34 8.00 NA 25.00 14.29 9.09 NA 17.46 8.33 8.70 2.78 16.67 25.00 7.41 13.79 23.21 NA 10.20 11.36 14.81 27.27 NA 22.22 NA NA 13.64 14.29 9.09 23.33 13.95 18.52 15.00 10.81 3.85 15.38 27.42 NA 10.45 23.81 14.55 14.29 14.29 8.57 17.65 6.98 NA 17.02 NA NA 9.52 17.95 34.78 NA 18.52 K intron_retention CG5789,I_chr3R_20367337_20369421 chr3R - chr3R_20362945_20363008 chr3R_20362944_20362945;chr3R_20363008_20363009 chr3R_20361926_20362944;chr3R_20363009_20363705 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 2.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Pp2A-29B,I_chr2L_8367210_8367311,I_chr2L_8369561_8369715,RI_chr2L_8369761_8369827 chr2L + chr2L_8369031_8369715 chr2L_8369561_8369715 chr2L_8369716_8369760;chr2L_8368758_8369030 3.05 2.30 3.23 2.06 2.27 2.73 2.62 3.10 2.19 2.86 2.76 3.19 2.91 3.85 2.33 5.28 1.24 3.88 2.48 3.92 3.03 5.43 2.92 2.69 2.99 3.68 3.44 8.82 4.49 2.74 2.27 5.15 9.18 2.80 4.41 3.92 2.75 2.36 4.33 5.68 5.15 2.24 1.33 1.81 7.76 5.16 4.20 8.05 3.05 2.39 2.67 3.16 3.37 3.45 3.24 2.65 2.05 7.07 K intron_retention CG3287,I_chr2R_2700203_2700285 chr2R + chr2R_2701259_2701541 chr2R_2701258_2701259;chr2R_2701541_2701542 chr2R_2700678_2701258;chr2R_2701542_2702327 1.06 0.00 1.96 0.00 0.00 0.00 2.90 1.98 0.00 0.00 0.00 0.00 5.08 0.00 4.00 1.27 2.27 0.00 2.78 1.54 0.00 2.11 0.00 3.57 4.35 3.57 2.50 6.78 9.21 0.00 0.00 0.00 1.06 4.63 0.00 0.00 0.00 0.00 3.85 2.82 1.55 1.83 2.13 3.12 1.87 1.41 0.00 2.17 0.95 0.00 2.70 0.00 0.00 0.00 0.00 0.00 3.39 0.91 K alternative_acceptor CG14782,mei-38 chrX + chrX_1371322_1371408 chrX_1371322_1371405 chrX_1371127_1371321;chrX_1371409_1372262 4.32 8.11 3.23 3.45 5.00 0.00 6.90 5.26 9.62 0.00 5.88 2.08 4.76 3.85 3.12 5.26 NA 4.35 0.00 2.63 3.85 9.68 4.44 5.13 4.00 2.94 6.98 14.29 18.52 8.00 4.35 5.08 7.14 6.90 0.00 2.22 5.00 3.23 6.00 6.02 5.45 3.23 3.03 0.00 4.55 3.75 2.33 3.66 1.61 2.56 5.88 3.03 2.78 1.85 6.67 2.44 4.35 4.30 K intron_retention CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27044831 chr3R_27044770_27044771;chr3R_27044831_27044832 chr3R_27044671_27044770;chr3R_27044832_27045273 63.64 NA NA NA NA NA 52.63 75.00 70.59 NA NA 77.78 NA NA NA 73.33 NA 50.00 60.00 69.23 NA NA NA 80.00 NA 60.00 63.64 NA 82.35 55.56 NA 72.73 40.00 41.67 NA 66.67 55.56 NA NA 56.25 36.36 56.25 NA 25.00 NA NA 77.78 NA 90.91 NA NA NA NA NA 63.64 70.00 NA 50.00 K intron_retention Csk,I_chr3R_7463337_7463512,I_chr3R_7468928_7472509 chr3R - chr3R_7461692_7461746 chr3R_7461691_7461692;chr3R_7461746_7461747 chr3R_7461423_7461691;chr3R_7461747_7461966 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.29 0.00 1.08 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 2.82 0.00 0.00 0.00 0.62 0.77 0.83 0.00 0.56 0.62 0.65 1.25 0.00 0.00 0.78 0.63 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 K intron_retention CG13074 chr3L - chr3L_16089102_16089161 chr3L_16089101_16089102;chr3L_16089161_16089162 chr3L_16089004_16089101;chr3L_16089162_16089256 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Tfb1 chr2R + chr2R_10250584_10250756 chr2R_10250584_10250749 chr2R_10250565_10250583;chr2R_10250757_10251018 95.45 NA NA 100.00 NA 90.48 NA 97.06 NA NA NA 95.45 NA NA 90.00 NA NA NA NA 96.30 NA NA NA NA NA NA NA NA NA NA NA NA NA 95.83 NA NA NA NA NA 72.73 NA 97.14 NA NA 94.29 NA NA NA 88.24 NA NA NA NA NA NA NA NA NA K alternative_donor CE_chrX_20766225_20927825,CG1529,RI_chrX_20902550_20902613 chrX - chrX_20902550_20902613 chrX_20902550_20902601 chrX_20902450_20902549;chrX_20902614_20902713 0.00 0.00 0.00 5.00 0.00 0.00 0.00 8.33 2.70 0.00 0.00 0.00 NA NA 5.56 0.00 6.67 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 2.17 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 3.57 K intron_retention Ddip2,I_chr3L_252776_253313 chr3L - chr3L_252051_252111 chr3L_252050_252051;chr3L_252111_252112 chr3L_251390_252050;chr3L_252112_252463 0.00 0.00 0.00 3.77 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Tango5,noncoding_22970,I_chrX_10659836_10661185 chrX - chrX_10656468_10658389;chrX_10656468_10658117 chrX_10656468_10658202 chrX_10656442_10656467;chrX_10658390_10658400 96.77 91.49 98.85 100.00 98.57 94.59 98.78 99.04 99.45 97.83 94.57 96.93 98.21 98.57 100.00 97.75 97.22 98.61 97.80 98.58 100.00 93.58 97.78 95.05 98.18 92.68 94.59 88.00 85.71 90.16 96.91 91.18 97.10 97.46 96.15 83.33 95.80 100.00 95.45 93.75 94.12 95.32 96.67 92.86 95.08 78.26 86.11 98.25 96.38 100.00 93.94 98.41 96.77 88.89 99.02 97.78 84.00 90.48 K alternative_acceptor CG6463,I_chr3L_10686961_10687096 chr3L - chr3L_10686961_10687096 chr3L_10686968_10687096 chr3L_10687097_10687196;chr3L_10686861_10686960 98.97 98.13 99.19 97.62 98.99 98.96 100.00 99.33 98.40 100.00 98.97 99.04 100.00 100.00 100.00 98.43 100.00 100.00 100.00 98.77 98.11 98.97 98.67 98.57 91.11 99.08 100.00 100.00 95.24 98.11 99.01 98.98 98.46 99.38 100.00 98.31 99.37 98.31 97.79 99.19 100.00 98.61 100.00 98.90 98.59 99.19 98.56 98.33 98.86 98.04 98.77 97.92 99.22 99.07 100.00 98.21 98.08 100.00 K intron_retention tay,RI_chrX_15779977_15780033,I_chrX_15779977_15780538,RI_chrX_15780874_15781045,I_chrX_15783766_15785978 chrX - chrX_15779977_15781045 chrX_15779976_15779977;chrX_15781045_15781046 chrX_15779877_15779976;chrX_15781046_15781068 71.43 NA NA NA NA NA 46.15 66.67 61.11 NA NA 71.43 87.50 80.00 NA 53.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA 70.00 NA NA NA NA NA NA NA NA NA NA NA 72.73 87.50 NA NA NA NA NA NA NA NA NA K intron_retention Aldh chr2L + chr2L_9390137_9390245 chr2L_9390136_9390137;chr2L_9390245_9390246 chr2L_9390040_9390136;chr2L_9390246_9390312 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 K alternative_acceptor Ssadh,RI_chr3R_21451890_21451963,I_chr3R_21452371_21452464,I_chr3R_21452407_21452453 chr3R - chr3R_21452386_21452453;chr3R_21452371_21452453 chr3R_21452368_21452453 chr3R_21452454_21452553;chr3R_21452307_21452367 80.77 100.00 56.25 73.33 NA NA 82.35 77.78 78.26 NA 91.67 77.27 83.33 85.71 81.82 70.59 NA 76.92 NA 80.00 NA 82.61 85.00 82.35 NA NA 80.95 80.00 NA 80.00 76.92 72.73 NA 87.50 91.67 73.68 73.91 75.00 89.47 73.68 NA 73.68 NA 76.92 62.50 80.95 85.00 92.31 85.00 69.23 80.77 NA 93.33 88.24 82.35 NA 80.00 87.50 K cassette Mob2,RI_chr3L_11520443_11527440,CE_chr3L_11520917_11527526,RE_chr3L_11520925_11527489,RI_chr3L_11535932_11545929 chr3L - chr3L_11520443_11527440 chr3L_11520443_11520554;chr3L_11520917_11527440 chr3L_11520555_11520916 chr3L_11520343_11520442;chr3L_11527441_11527462 98.96 100.00 98.59 98.13 98.25 98.39 98.66 100.00 99.46 100.00 99.07 96.88 98.48 98.59 100.00 97.30 98.67 100.00 98.91 97.89 97.59 98.14 96.30 100.00 100.00 100.00 100.00 98.77 100.00 98.91 96.81 98.59 99.15 99.32 98.89 100.00 100.00 98.08 98.59 99.32 99.05 99.32 98.51 98.55 100.00 99.12 98.61 100.00 99.39 100.00 98.96 100.00 97.22 98.04 98.95 100.00 100.00 100.00 K intron_retention exba,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1425813_1426009 chr3R_1425812_1425813;chr3R_1426009_1426010 chr3R_1425790_1425812;chr3R_1426010_1426024 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 98.59 96.88 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 95.00 100.00 100.00 100.00 100.00 100.00 95.45 97.56 100.00 100.00 100.00 100.00 98.21 96.88 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Ilp6,RI_chrX_2226173_2226308,I_chrX_2226173_2226571 chrX - chrX_2226173_2226376;chrX_2226173_2227352;chrX_2226173_2226571 chrX_2226173_2226308 chrX_2226073_2226172;chrX_2227353_2227719 0.00 0.00 0.00 1.06 1.23 1.82 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 1.15 1.61 0.00 1.49 0.00 0.00 0.00 6.25 0.85 0.00 0.00 0.00 0.00 0.00 4.88 0.00 0.00 0.00 0.00 0.00 1.85 2.04 0.82 0.00 0.00 0.00 5.36 0.00 0.00 0.00 3.57 2.82 1.23 0.00 1.32 0.00 0.00 4.35 0.00 1.49 0.00 0.00 0.88 0.00 K intron_retention PNGase,I_chr2R_1906759_1906817,I_chr2R_1906899_1906977 chr2R + chr2R_1907055_1907110 chr2R_1907054_1907055;chr2R_1907110_1907111 chr2R_1906978_1907054;chr2R_1907111_1907175 8.99 6.10 11.25 18.69 14.29 11.11 8.55 13.50 9.88 0.00 10.42 10.74 8.99 6.38 8.99 10.74 11.54 11.76 10.83 8.00 7.81 14.06 8.82 10.96 10.81 10.84 7.25 15.00 5.56 6.67 10.66 6.48 10.16 11.19 8.96 12.24 11.11 5.00 4.62 2.90 7.69 8.48 11.11 5.56 3.54 5.81 5.41 8.84 13.10 12.16 4.60 15.79 11.11 4.00 12.40 3.95 7.02 6.01 K intron_retention RpL32,I_chr3R_25871509_25871807 chr3R - chr3R_25871509_25871771 chr3R_25871508_25871509;chr3R_25871771_25871772 chr3R_25871409_25871508;chr3R_25871772_25871834 100.00 NA NA NA NA NA 100.00 NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 NA 100.00 100.00 100.00 K intron_retention CG15611,I_chr2R_12996782_13000822 chr2R + chr2R_12997580_12997671 chr2R_12997579_12997580;chr2R_12997671_12997672 chr2R_12997448_12997579;chr2R_12997672_12998005 3.40 0.00 2.13 8.33 7.14 6.06 11.63 5.13 6.41 NA 0.00 7.55 0.00 0.00 2.94 5.66 6.67 3.23 10.81 8.33 0.00 NA 0.00 3.57 4.35 7.69 8.33 5.26 0.00 0.00 5.26 NA 0.00 7.41 0.00 NA 5.13 8.00 0.00 0.00 0.00 7.14 4.00 0.00 NA 3.85 0.00 NA 7.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 NA K intron_retention CG32441 chr3L + chr3L_21567787_21567843 chr3L_21567786_21567787;chr3L_21567843_21567844 chr3L_21567533_21567786;chr3L_21567844_21568011 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 2.13 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD U2af50,I_chrX_16252240_16252638 chrX - chrX_16252240_16252843 chrX_16252240_16252638 chrX_16252140_16252239;chrX_16252844_16253100 2.17 0.00 0.00 4.94 4.88 2.38 2.78 2.53 2.75 3.45 2.38 2.38 3.45 0.00 1.85 0.00 2.44 2.63 1.92 5.48 6.52 0.00 2.20 4.44 2.08 0.00 0.00 1.10 1.43 0.00 4.76 2.50 0.00 5.06 4.00 1.33 1.08 2.50 1.54 1.11 7.41 1.33 7.69 3.61 0.00 2.33 0.00 0.00 1.16 1.15 0.97 7.27 0.00 5.26 2.17 1.35 4.21 0.00 K intron_retention tra2,REFI_chr2R_10491644_10491701 chr2R - chr2R_10489948_10490008 chr2R_10489947_10489948;chr2R_10490008_10490009 chr2R_10489509_10489947;chr2R_10490009_10490381 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 4.92 0.00 0.00 0.00 3.19 0.00 0.00 0.00 0.00 0.00 0.00 3.23 2.86 5.71 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 1.85 NA 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 3.23 3.03 1.35 8.33 K alternative_donor RpL32,I_chr3R_25871509_25871807 chr3R - chr3R_25871509_25871771;chr3R_25871509_25871611;chr3R_25871509_25871583;chr3R_25871509_25871855 chr3R_25871509_25871851 chr3R_25871409_25871508;chr3R_25871856_25871862 1.43 1.12 1.39 1.43 1.30 1.19 1.23 1.06 1.23 2.41 1.60 1.21 0.95 0.69 0.91 0.92 1.01 1.23 1.00 1.21 1.43 2.48 2.24 1.58 1.96 1.25 1.89 1.85 3.33 4.09 1.26 2.02 3.98 1.43 3.20 2.57 1.26 1.57 1.29 1.60 3.04 1.14 1.40 2.42 2.19 3.36 1.54 3.52 0.83 1.38 1.55 2.30 1.16 1.64 1.19 2.18 1.23 3.37 N cassette Nos,I_chr2L_10826086_10826539 chr2L - chr2L_10818567_10822967 chr2L_10818567_10822106;chr2L_10822247_10822967 chr2L_10822107_10822246 chr2L_10818418_10818566;chr2L_10822968_10823002 66.66 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 28.57 33.33 NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Nc73EF,I_chr3L_16950628_16951334,I_chr3L_16950952_16952198,I_chr3L_16951588_16952198,I_chr3L_16951626_16952198,I_chr3L_16952138_16952198,I_chr3L_16952985_16955434,I_chr3L_16953768_16954599 chr3L + chr3L_16950628_16952198;chr3L_16950615_16952198 chr3L_16950606_16952198 chr3L_16952199_16952207;chr3L_16950580_16950605 3.85 4.35 11.63 8.11 7.69 14.81 6.67 7.84 0.00 NA NA 4.62 3.45 3.85 2.63 2.63 7.69 NA 0.00 2.44 3.12 3.12 9.52 0.00 6.90 NA 3.12 3.33 NA NA 10.00 NA NA 10.91 0.00 0.00 2.78 8.16 3.64 2.38 NA 5.00 4.55 0.00 0.00 3.85 7.41 NA 5.88 9.43 2.82 7.14 NA 0.00 6.25 2.56 0.00 NA K intron_retention pAbp,I_chr2R_14027838_14028996 chr2R + chr2R_14028922_14028992 chr2R_14028921_14028922;chr2R_14028992_14028993 chr2R_14028916_14028921;chr2R_14028993_14029177 0.00 2.11 0.00 5.94 1.92 0.00 6.31 3.90 0.87 0.00 0.00 1.98 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.93 0.00 1.17 0.00 0.00 1.75 9.80 3.51 5.30 2.04 2.04 0.00 0.00 3.23 0.00 0.00 8.64 0.00 0.00 0.00 1.94 5.71 2.48 0.00 0.00 0.00 0.00 0.00 4.76 1.57 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 6.67 K alternative_donor CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_162747_162825 chr4_162754_162825 chr4_162826_163517;chr4_160896_162746 100.00 100.00 100.00 100.00 96.43 100.00 98.70 100.00 100.00 94.12 100.00 98.72 97.22 100.00 100.00 100.00 100.00 100.00 100.00 98.80 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 94.74 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.94 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette G9a,I_chrX_145325_145634,I_chrX_145570_145634 chrX + chrX_145325_145634 chrX_145325_145383;chrX_145575_145634 chrX_145384_145574 chrX_145225_145324;chrX_145635_145734 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 92.86 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG6171,I_chr3R_11188806_11188873,CG34404,CG14868 chr3R - chr3R_11188806_11188873 chr3R_11188805_11188806;chr3R_11188873_11188874 chr3R_11188706_11188805;chr3R_11188874_11188973 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 97.92 94.44 100.00 97.87 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 96.30 93.33 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 K intron_retention M(2)21AB,I_chr2L_110878_111037,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_110878_111906 chr2L_110877_110878;chr2L_111906_111907 chr2L_110778_110877;chr2L_111907_112019 3.20 2.16 4.08 2.71 1.80 3.03 9.55 3.98 3.69 2.33 3.03 5.71 5.88 6.15 4.43 4.74 3.10 4.73 3.39 3.30 2.84 3.12 2.89 4.17 4.24 3.85 3.08 4.59 4.26 2.99 3.30 1.63 1.83 3.17 3.47 2.72 4.15 2.34 5.02 4.74 0.00 3.05 1.89 3.54 1.72 2.98 0.00 3.05 4.60 3.20 4.45 2.99 2.31 3.31 3.17 4.38 4.51 1.01 K jcn_only_AD lark,noncoding_11093,REI_chr3L_7332718_7333975,RI_chr3L_7334219_7334452 chr3L + chr3L_7332718_7333975 chr3L_7333871_7333975 chr3L_7333976_7334075;chr3L_7332618_7332717 91.53 96.45 93.33 80.60 91.53 95.08 97.56 91.04 94.12 79.75 90.00 94.29 92.86 91.53 95.24 92.31 97.96 98.28 96.88 94.03 87.23 90.99 89.03 95.03 91.47 96.72 84.00 86.44 87.27 90.76 79.41 84.92 87.86 93.80 83.21 76.23 88.52 95.00 93.07 83.06 84.25 95.73 91.23 82.80 95.17 92.00 89.44 81.71 94.16 94.44 85.85 89.02 95.24 88.30 93.65 93.68 93.15 91.87 K alternative_acceptor key,I_chr2R_20674567_20674813,I_chr2R_20674654_20674897,RI_chr2R_20676692_20676888 chr2R - chr2R_20674567_20674813 chr2R_20674654_20674813 chr2R_20674814_20674879;chr2R_20674554_20674566 98.04 97.33 98.46 96.00 98.28 98.18 98.97 97.17 98.62 100.00 100.00 98.36 100.00 100.00 97.33 95.96 100.00 98.04 96.83 97.67 97.92 98.18 100.00 97.85 98.39 98.31 99.04 98.00 95.24 98.21 98.31 97.83 94.87 96.77 94.55 97.96 96.12 98.15 97.83 98.85 100.00 99.20 95.83 98.63 95.12 98.46 97.37 90.00 96.46 97.80 98.90 98.21 96.72 97.10 100.00 96.34 96.77 98.36 K jcn_only_AA KP78a,I_chr3R_7176882_7178734 chr3R - chr3R_7176882_7178734 chr3R_7176885_7178734 chr3R_7178735_7178834;chr3R_7176782_7176881 95.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 91.43 NA NA 95.00 NA NA NA 95.00 NA NA NA NA NA NA 92.00 NA NA 93.75 95.83 NA NA NA NA 95.00 NA NA 96.15 NA NA NA NA NA NA NA NA NA NA K alternative_donor CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806824_22809684;chr3R_22806425_22809684 chr3R_22806314_22809684 chr3R_22809685_22809939;chr3R_22806256_22806313 0.00 0.00 0.00 0.00 1.59 0.00 0.56 0.38 0.00 0.00 0.00 0.45 0.93 0.00 0.00 0.00 0.00 0.84 0.00 0.39 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.74 0.00 1.30 0.52 0.00 0.00 2.50 0.00 0.00 1.12 0.00 0.45 0.00 0.00 0.00 0.00 0.00 1.04 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 K intron_retention Psi,I_chr2R_12753387_12753659 chr2R - chr2R_12754752_12754830 chr2R_12754751_12754752;chr2R_12754830_12754831 chr2R_12753660_12754751;chr2R_12754831_12755136 0.00 0.00 NA 0.00 NA NA NA 0.00 3.85 NA 0.00 0.00 NA NA 0.00 NA NA NA NA 5.71 NA 5.56 6.06 0.00 NA NA NA NA 9.09 0.00 NA 0.00 0.00 0.00 6.25 0.00 0.00 NA 0.00 10.71 NA 0.00 NA NA NA 0.00 NA 2.63 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 K jcn_only_AA CG9586 chr2L - chr2L_9165843_9165942 chr2L_9165873_9165942 chr2L_9165943_9166164;chr2L_9165830_9165842 0.00 0.00 0.64 0.52 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.35 0.00 0.72 0.61 0.00 0.00 0.00 0.80 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.48 0.56 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.43 0.37 0.45 0.34 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.41 0.22 0.38 K jcn_only_AD l(2)k01209,I_chr2R_13308079_13310771,I_chr2R_13309452_13310771,RI_chr2R_13310877_13311160 chr2R + chr2R_13309417_13311160;chr2R_13309452_13311160;chr2R_13308079_13311160 chr2R_13308486_13311160 chr2R_13311161_13311260;chr2R_13307979_13308078 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 K intron_retention CG5004,E_chrX_17024712_17024996 chrX + chrX_17019978_17020033 chrX_17019977_17019978;chrX_17020033_17020034 chrX_17019909_17019977;chrX_17020034_17020118 20.00 NA 11.76 15.79 NA NA NA 21.43 25.00 NA NA 20.00 29.41 NA NA NA 13.33 14.29 25.00 17.86 NA NA NA NA NA NA 87.50 NA NA NA NA NA NA 30.00 NA NA NA NA NA NA NA 25.81 NA NA NA NA NA NA 18.52 NA NA NA NA NA 15.79 NA NA NA K intron_retention CG14425,Sxl,CG14425_Sxl,CEF_chrX_6984538_6992033 chrX - chrX_6986204_6992033 chrX_6986203_6986204;chrX_6992033_6992034 chrX_6985707_6986203;chrX_6992034_6992068 25.84 NA NA 35.71 NA NA 13.04 25.00 31.03 NA NA 12.50 0.00 NA NA 33.33 NA NA 33.33 26.67 NA NA NA NA NA NA NA NA NA NA 14.29 NA 16.67 28.57 NA NA NA NA NA 14.29 NA 41.67 NA NA NA NA NA NA 20.00 NA NA NA NA NA 30.77 NA NA NA K alternative_acceptor KP78a,I_chr3R_7176882_7178734 chr3R - chr3R_7176882_7178734 chr3R_7176885_7178734 chr3R_7178735_7178834;chr3R_7176782_7176881 88.19 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 NA NA 87.50 NA NA NA 87.50 NA NA NA NA NA NA 88.89 NA NA 91.67 88.89 NA NA NA NA 87.50 NA NA 90.00 NA NA NA NA NA NA NA NA NA NA K intron_retention CG9153,Myo61F chr3L + chr3L_1314091_1314157 chr3L_1314090_1314091;chr3L_1314157_1314158 chr3L_1313975_1314090;chr3L_1314158_1314320 7.14 5.00 10.26 5.61 11.86 5.80 7.78 7.14 9.03 4.88 14.49 11.76 6.49 8.06 9.88 6.67 11.76 11.48 11.48 9.15 10.64 0.84 8.63 3.09 4.11 8.06 6.72 5.19 3.09 2.42 8.79 4.08 3.24 8.25 7.69 5.83 2.54 7.14 6.02 5.43 1.90 7.63 10.00 9.80 6.67 7.41 6.67 1.49 4.80 20.90 7.32 8.47 3.23 8.86 7.14 8.57 6.52 3.75 K alternative_donor gish chr3R + chr3R_12106734_12107802 chr3R_12106747_12107802 chr3R_12107803_12107810;chr3R_12106723_12106733 77.78 77.78 NA 71.43 NA NA 76.92 92.31 80.00 NA NA 70.59 77.78 NA 66.67 62.50 NA NA 66.67 77.42 NA 70.00 80.95 71.43 90.00 NA 83.33 83.33 84.62 65.00 81.25 87.50 91.67 87.50 82.35 66.67 66.67 NA 88.89 68.18 77.78 86.67 NA 79.17 87.50 73.33 NA 65.00 82.61 77.78 78.57 92.31 60.00 87.50 60.00 75.00 NA 56.25 K alternative_donor Fps85D,I_chr3R_5194729_5194776,I_chr3R_5216796_5218450 chr3R - chr3R_5216796_5218462 chr3R_5216796_5218450 chr3R_5216696_5216795;chr3R_5218463_5218550 0.00 1.79 0.00 2.82 0.00 0.00 0.00 1.30 0.69 0.00 0.00 0.00 0.00 0.00 1.32 1.72 0.00 0.00 0.00 1.57 2.17 0.00 0.92 1.25 1.92 2.00 1.59 0.00 2.90 1.75 0.00 0.00 1.75 0.00 0.00 2.78 0.95 0.00 1.19 1.22 2.63 0.00 2.13 0.95 0.00 2.27 0.00 2.13 0.91 0.00 3.49 0.00 0.00 0.00 0.00 0.00 3.51 0.00 K intron_retention Rab11,RE_chr3R_16939259_16939667 chr3R + chr3R_16940824_16940972 chr3R_16940823_16940824;chr3R_16940972_16940973 chr3R_16940475_16940823;chr3R_16940973_16941873 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.09 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.34 0.11 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.31 0.00 0.00 0.00 K intron_retention Irbp,Ranbp9 chr3R + chr3R_7241213_7241269 chr3R_7241212_7241213;chr3R_7241269_7241270 chr3R_7240738_7241212;chr3R_7241270_7241415 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG32809,I_chrX_1576304_1577129,I_chrX_1576463_1577129,I_chrX_1576815_1577129,I_chrX_1577031_1577129,CEI_chrX_1579569_1579679,RI_chrX_1585391_1586471,I_chrX_1589508_1589564 chrX - chrX_1576815_1577129 chrX_1576815_1576895;chrX_1576962_1577129 chrX_1576896_1576961 chrX_1576803_1576814;chrX_1577130_1577229 90.45 88.89 100.00 NA 100.00 88.89 100.00 90.00 95.00 85.71 100.00 92.86 NA 100.00 87.50 100.00 88.89 NA NA 94.74 88.89 NA NA 100.00 NA 85.71 87.50 NA NA 85.71 92.31 NA 85.71 90.91 90.00 100.00 100.00 NA 87.50 84.62 NA 100.00 NA 88.89 85.71 88.89 NA 88.89 94.12 85.71 100.00 100.00 NA NA 100.00 NA NA NA K multi_cassette lap,I_chr3R_3017854_3019314 chr3R + chr3R_3017854_3019314 chr3R_3017854_3018213;chr3R_3018377_3018442;chr3R_3018735_3019314 chr3R_3018214_3018376;chr3R_3018443_3018734 chr3R_3017754_3017853;chr3R_3019315_3019410 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention I_chr2R_2754447_2755071,Spn4,CG9454 chr2R - chr2R_2764239_2764725 chr2R_2764238_2764239;chr2R_2764725_2764726 chr2R_2764101_2764238;chr2R_2764726_2764867 60.00 66.67 42.86 54.55 77.78 61.11 52.17 65.62 65.00 29.41 90.00 70.97 60.00 71.43 71.43 76.19 56.25 81.25 66.67 57.89 55.56 55.56 59.09 57.14 50.00 66.67 55.00 53.33 57.14 58.82 80.00 52.38 40.91 67.74 50.00 81.82 56.25 66.67 72.00 53.19 63.64 70.97 60.00 76.47 40.00 44.83 70.00 63.16 61.29 62.50 47.83 52.94 59.26 60.00 64.71 65.00 59.09 29.41 N intron_retention CG32512 chrX - chrX_20934443_20934522 chrX_20934442_20934443;chrX_20934522_20934523 chrX_20933620_20934442;chrX_20934523_20934589 100.00 NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor gw,I_chr4_679135_681671,noncoding_20755 chr4 - chr4_682607_683578;chr4_682607_683596 chr4_682607_683702 chr4_682360_682606;chr4_683703_683710 60.00 NA NA 37.50 NA NA NA 77.78 50.00 NA NA NA NA NA NA 70.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 71.43 NA NA NA NA NA NA NA NA NA K alternative_last_exon scu chrX + chrX_17985424_17985984 chrX_17985424_17985587 chrX_17985985_17987490 chrX_17985588_17985687 chrX_17985361_17985423 1.47 0.96 0.93 1.95 1.07 1.65 2.07 1.19 1.18 0.62 0.00 1.75 2.27 1.96 2.40 4.85 0.65 1.12 1.73 1.11 0.61 3.68 1.16 1.41 0.91 1.52 1.09 2.50 2.03 2.67 6.77 2.58 3.96 1.53 2.26 1.42 0.60 0.00 0.62 3.72 1.27 1.58 1.36 1.54 2.97 2.96 0.99 4.27 1.36 0.34 1.48 0.62 1.67 1.47 1.37 0.90 0.53 3.54 K intron_retention CG42553,I_chr3L_834336_834491,F_chr3L_835436_835825 chr3L + chr3L_835331_835386 chr3L_835330_835331;chr3L_835386_835387 chr3L_834783_835330;chr3L_835387_835435 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9555,CG17906 chr2L + chr2L_8994785_8994924 chr2L_8994784_8994785;chr2L_8994924_8994925 chr2L_8994651_8994784;chr2L_8994925_8995026 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_last_exon AP-1sigma chr3R + chr3R_19785316_19786619;chr3R_19785316_19787772 chr3R_19785316_19785614 chr3R_19786620_19787225;chr3R_19787773_19788299 chr3R_19785615_19785954 chr3R_19785178_19785315 25.00 21.37 31.01 25.60 23.68 27.55 30.86 27.67 23.93 11.32 23.15 24.68 30.08 29.13 29.51 27.98 31.13 20.75 30.82 25.28 19.15 25.93 24.70 23.26 24.14 30.00 26.09 28.28 25.30 23.30 30.61 16.87 20.45 29.75 23.33 27.36 18.18 25.00 20.43 27.55 16.82 26.58 31.03 22.46 17.78 13.77 17.43 25.45 26.48 19.35 27.56 28.85 16.44 17.17 30.46 16.52 14.73 13.91 K intron_retention CG33523,RI_chr3L_5920177_5921323 chr3L + chr3L_5921741_5921803 chr3L_5921740_5921741;chr3L_5921803_5921804 chr3L_5921637_5921740;chr3L_5921804_5922139 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.88 3.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention tlk chrX + chrX_3671394_3675687 chrX_3671393_3671394;chrX_3675687_3675688 chrX_3671379_3671393;chrX_3675688_3677592 0.00 NA NA 5.56 NA NA NA 12.50 0.00 NA NA 14.29 NA NA NA 14.29 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 NA 0.00 14.29 NA 0.00 NA NA NA NA NA 0.00 12.50 NA NA NA NA NA NA NA NA NA K intron_retention gw,I_chr4_679135_681671 chr4 - chr4_673469_673526 chr4_673468_673469;chr4_673526_673527 chr4_673272_673468;chr4_673527_673677 0.00 0.00 0.00 1.95 0.00 0.00 0.76 1.18 0.65 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 1.12 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CanB2,CG12825 chr2R + chr2R_3675038_3675104 chr2R_3675038_3675095 chr2R_3674969_3675037;chr2R_3675105_3675170 100.00 100.00 98.80 99.27 100.00 100.00 100.00 100.00 100.00 97.50 100.00 99.19 100.00 98.59 100.00 99.15 100.00 100.00 98.73 99.45 98.70 98.25 98.65 100.00 98.04 98.72 100.00 97.92 98.04 100.00 100.00 98.31 100.00 100.00 98.15 98.48 98.63 100.00 98.77 98.95 100.00 100.00 100.00 98.67 98.51 100.00 100.00 100.00 99.31 100.00 100.00 100.00 96.61 100.00 100.00 100.00 98.80 99.09 K alternative_donor Lnk,RI_chr3R_21714780_21715376 chr3R + chr3R_21714419_21715376;chr3R_21714614_21715376 chr3R_21714788_21715376 chr3R_21715377_21715476;chr3R_21714271_21714418 0.00 0.00 2.38 1.92 0.00 0.00 3.12 1.49 1.11 0.00 0.00 1.39 0.00 2.50 2.63 2.99 0.00 0.00 0.00 1.03 0.00 0.00 1.82 0.00 4.17 0.00 1.85 2.86 3.57 0.00 1.45 0.00 3.03 1.41 0.00 0.00 2.38 2.70 0.00 1.59 0.00 0.00 2.78 2.56 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 2.86 0.00 2.56 K alternative_acceptor Pp1-87B chr3R - chr3R_8249909_8250332 chr3R_8250239_8250332 chr3R_8250333_8251639;chr3R_8249673_8249908 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.68 100.00 100.00 100.00 99.62 100.00 100.00 100.00 99.77 99.57 99.54 100.00 99.34 100.00 100.00 100.00 100.00 100.00 K intron_retention ATPsyn-beta chr4 + chr4_1052580_1053532 chr4_1052579_1052580;chr4_1053532_1053533 chr4_1052474_1052579;chr4_1053533_1053844 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.14 0.00 0.00 0.04 0.00 0.29 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor I_chr3R_1303481_1304607,CG31550 chr3R + chr3R_1312607_1312781 chr3R_1312607_1312772 chr3R_1312598_1312606;chr3R_1312782_1312899 90.91 78.57 84.62 100.00 100.00 88.89 93.33 93.75 80.00 NA NA 92.31 NA NA 91.67 92.31 100.00 90.91 90.00 88.24 NA NA 93.33 90.91 NA 100.00 90.00 NA 100.00 NA 88.89 NA 90.00 92.86 NA NA 92.31 NA 68.75 93.33 NA 87.50 87.50 86.67 83.33 83.33 100.00 NA 93.75 92.31 93.33 NA 87.50 NA 87.50 90.00 100.00 72.73 K alternative_donor RI_chr3R_7061265_7061322,CG31388 chr3R + chr3R_7064332_7064678 chr3R_7064623_7064678 chr3R_7064679_7064763;chr3R_7063775_7064331 71.43 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 71.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA K intron_retention Cnx99A,I_chr3R_25142581_25142644,I_chr3R_25144335_25145173,I_chr3R_25145243_25145309,I_chr3R_25145256_25145426 chr3R - chr3R_25142088_25142441 chr3R_25142087_25142088;chr3R_25142441_25142442 chr3R_25141959_25142087;chr3R_25142442_25142582 0.78 0.72 0.42 0.92 0.53 0.00 1.59 0.72 0.93 1.91 0.24 0.92 0.58 0.00 0.39 1.24 0.84 1.01 0.00 0.53 0.92 2.22 1.02 0.91 0.24 0.29 1.11 1.50 1.07 0.62 0.84 0.75 0.30 0.86 0.59 3.93 0.83 0.34 0.51 0.56 1.57 0.78 0.00 0.88 1.59 0.55 0.67 1.24 0.42 1.05 1.34 0.66 0.00 0.80 0.78 0.68 0.64 1.20 K alternative_acceptor CG8726 chr2R - chr2R_3857956_3858036 chr2R_3857980_3858036 chr2R_3858037_3858218;chr2R_3857740_3857955 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 K alternative_donor CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2435133_2439498;chr3L_2436229_2439498 chr3L_2439416_2439498 chr3L_2439499_2439583;chr3L_2434626_2435132 0.77 1.27 1.54 0.78 0.00 1.82 0.94 0.98 0.63 0.00 2.08 0.81 2.00 0.00 1.49 1.49 1.89 1.72 1.75 0.77 2.08 0.35 0.52 0.79 0.89 1.56 0.78 0.78 0.58 0.74 0.00 0.00 0.43 2.15 0.00 0.68 0.55 0.00 0.59 0.50 0.00 0.78 1.96 0.68 0.00 1.12 0.00 0.55 0.94 1.02 0.74 1.49 0.00 0.00 1.25 0.00 0.00 0.00 K jcn_only_AD CG12576,RI_chrX_21878289_21882347,I_chrX_21882735_21882809,I_chrX_21882735_21883407,I_chrX_21882735_21883467,I_chrX_21882735_21883620,I_chrX_21882735_21883714 chrX - chrX_21882735_21882809;chrX_21882735_21883714;chrX_21882735_21883467 chrX_21882735_21883750 chrX_21882635_21882734;chrX_21883751_21883814 97.73 95.45 97.10 96.03 98.51 95.38 95.88 96.70 98.21 98.11 98.77 94.62 97.56 94.32 98.77 96.03 100.00 93.15 97.98 97.90 97.53 98.45 97.41 98.48 95.92 95.83 100.00 100.00 98.08 96.12 92.47 98.51 100.00 99.32 95.45 100.00 100.00 100.00 97.53 99.12 97.14 98.55 97.18 96.64 98.77 97.41 98.77 99.41 95.98 94.44 98.88 96.88 98.15 97.73 97.96 97.40 95.52 98.89 K intron_retention F_chr2R_18805721_18805778,Nup214,I_chr2R_18820842_18820922 chr2R - chr2R_18809465_18809520 chr2R_18809464_18809465;chr2R_18809520_18809521 chr2R_18808269_18809464;chr2R_18809521_18809862 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention tho2 chr2L - chr2L_2137927_2137983 chr2L_2137926_2137927;chr2L_2137983_2137984 chr2L_2137883_2137926;chr2L_2137984_2138155 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 4.44 NA 12.50 3.85 0.00 0.00 0.00 0.00 0.00 2.86 0.00 5.88 0.00 0.00 7.69 0.00 6.90 7.41 9.68 0.00 35.48 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 4.17 20.00 7.58 7.69 0.00 1.96 6.52 0.00 0.00 1.72 4.17 0.00 8.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention E_chr3R_6935653_7037028,nocturnin,RI_chr3R_7026291_7032627,I_chr3R_7029508_7030286 chr3R + chr3R_7032861_7032914 chr3R_7032860_7032861;chr3R_7032914_7032915 chr3R_7032628_7032860;chr3R_7032915_7032977 0.00 0.00 0.00 8.11 0.00 0.00 2.33 2.38 0.00 0.00 12.50 6.06 9.38 0.00 0.00 3.64 4.00 0.00 11.11 0.00 5.71 0.00 0.00 2.56 0.00 26.67 9.76 NA 9.09 0.00 7.84 NA 0.00 0.00 10.00 8.33 3.45 0.00 8.16 0.00 20.00 0.00 0.00 3.70 0.00 0.00 6.67 0.00 5.71 0.00 0.00 0.00 2.56 0.00 0.00 0.00 3.57 0.00 K intron_retention per,noncoding_21656 chrX + chrX_2586424_2586509 chrX_2586423_2586424;chrX_2586509_2586510 chrX_2586241_2586423;chrX_2586510_2586698 23.41 NA NA NA NA NA NA NA 19.05 NA NA 15.00 NA NA NA NA NA NA NA 27.78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 27.78 NA NA 13.33 NA NA NA 30.77 NA NA NA NA NA NA NA NA NA K alternative_donor CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042891_5042960;chr2L_5042891_5043077 chr2L_5042891_5042983 chr2L_5042835_5042890;chr2L_5043078_5043083 12.50 12.73 12.07 15.28 13.51 16.67 10.47 10.98 12.60 17.24 12.12 12.96 7.69 8.62 12.73 11.40 20.83 13.16 18.64 10.22 22.22 9.30 6.90 9.43 9.76 14.89 10.87 16.67 17.14 14.29 13.56 12.82 17.50 12.09 9.30 14.63 8.16 11.11 8.16 18.18 12.50 7.45 12.50 9.38 10.64 13.89 7.84 7.69 13.13 10.20 11.86 14.89 14.71 11.76 14.93 8.33 3.64 12.50 K jcn_only_AA B4,I_chr2L_13513474_13549131,I_chr2L_13547133_13549131,I_chr2L_13547162_13547692,I_chr2L_13547304_13549131 chr2L - chr2L_13547304_13549131;chr2L_13547133_13549131 chr2L_13547162_13549131 chr2L_13549132_13549231;chr2L_13547062_13547132 74.36 67.74 56.67 80.49 78.26 62.50 66.67 72.50 75.00 79.17 NA 55.00 NA NA 44.44 68.18 48.00 NA 65.62 84.91 75.00 86.49 76.79 83.64 84.85 68.00 74.36 75.00 78.38 81.13 63.89 NA 62.86 61.11 80.00 75.68 78.38 71.43 78.85 86.21 72.09 73.81 68.18 82.22 72.73 81.97 81.58 83.33 68.09 77.14 79.49 73.91 NA 70.97 56.10 55.56 65.62 74.36 K intron_retention CG17721,RI_chr3R_7061265_7061322 chr3R + chr3R_7061229_7061322 chr3R_7061228_7061229;chr3R_7061322_7061323 chr3R_7061165_7061228;chr3R_7061323_7061422 6.15 7.69 3.23 9.68 0.00 8.33 5.00 4.76 9.52 6.82 5.00 10.00 0.00 9.09 6.90 16.00 13.64 NA 0.00 11.76 8.70 8.00 0.00 5.26 6.06 0.00 5.56 3.70 10.71 5.00 6.25 10.00 NA 6.67 NA 7.41 4.00 6.45 2.94 6.98 10.00 5.41 4.35 0.00 10.34 5.77 6.67 3.33 10.34 0.00 4.76 0.00 0.00 8.33 13.04 6.00 3.45 8.00 K alternative_acceptor Eph,I_chr4_631523_634240,I_chr4_632065_634240,I_chr4_632433_632707,I_chr4_632433_632988,I_chr4_639690_640473,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_632433_634240 chr4_632433_632707 chr4_632353_632432;chr4_634241_634340 4.79 4.00 4.65 12.50 2.78 2.86 10.00 3.57 5.10 0.00 3.45 4.82 4.35 7.14 2.22 5.26 4.44 0.00 4.00 5.88 2.56 9.09 1.85 3.45 4.00 4.44 6.67 22.22 9.09 0.00 5.71 12.50 7.69 6.35 5.56 5.56 2.56 3.85 3.03 3.57 14.29 5.56 5.13 4.76 10.00 4.55 10.00 0.00 4.88 20.00 4.65 3.85 NA 10.00 4.88 5.00 0.00 20.00 K intron_retention Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654157,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15648806_15649136 chrX_15648805_15648806;chrX_15649136_15649137 chrX_15648519_15648805;chrX_15649137_15649180 23.81 21.43 23.81 30.77 NA 33.33 23.33 18.37 26.47 NA 33.33 24.24 56.25 27.27 20.00 25.64 9.09 26.67 18.18 19.51 28.57 15.79 46.15 46.15 NA 30.77 35.71 NA 12.50 12.50 21.43 13.64 10.00 27.50 12.50 36.36 NA NA NA 11.76 NA 17.65 22.73 14.29 NA 7.41 NA 16.67 28.21 30.77 26.67 25.00 NA NA 32.00 NA NA 11.43 K jcn_only_AA Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5006178_5006243 chr2R_5006178_5006225 chr2R_5006021_5006177;chr2R_5006244_5006332 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 1.10 0.00 0.81 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 1.03 0.00 0.00 0.00 0.00 0.55 K intron_retention G-salpha60A chr2R + chr2R_19832427_19832482 chr2R_19832426_19832427;chr2R_19832482_19832483 chr2R_19832330_19832426;chr2R_19832483_19832603 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 NA 0.00 5.71 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 1.85 0.00 9.52 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 0.00 0.00 4.76 1.06 0.00 0.00 0.00 NA 0.00 0.00 6.67 2.63 0.00 K alternative_acceptor mub,RI_chr3L_21901021_21901163,I_chr3L_21908756_21909179 chr3L + chr3L_21914088_21914192;chr3L_21914088_21914156;chr3L_21914088_21914141 chr3L_21914088_21914153 chr3L_21914067_21914087;chr3L_21914193_21914427 13.33 18.18 10.00 15.00 28.57 25.00 15.38 11.11 12.00 12.50 14.29 5.71 17.65 12.50 15.79 11.11 27.27 5.88 NA 15.22 19.05 14.63 11.11 17.50 15.62 23.08 12.90 10.53 10.53 17.24 13.33 18.18 5.56 12.50 10.00 4.17 10.61 10.00 20.45 15.22 21.43 4.35 15.38 6.06 13.33 16.67 14.29 17.39 8.57 6.90 10.81 15.38 11.76 16.00 12.50 18.18 11.54 0.00 K jcn_only_AD E_chr2RHet_2881760_2912543,eIF-4B,I_chr2RHet_2903246_2912532,I_chr2RHet_2912605_2917250 chr2RHet + chr2RHet_2901839_2902093 chr2RHet_2902034_2902093 chr2RHet_2902094_2902500;chr2RHet_2901816_2901838 2.25 2.63 1.18 5.24 2.25 0.00 1.85 3.52 1.97 NA 1.96 2.50 0.00 3.79 1.74 1.97 1.77 0.91 2.24 0.00 1.11 3.33 4.00 10.71 0.00 1.27 4.17 0.00 9.30 2.94 9.09 0.00 0.00 1.86 12.50 2.78 5.66 NA 0.00 8.47 0.00 1.42 2.91 8.33 0.00 3.45 7.41 2.50 2.73 4.08 9.62 3.33 1.18 3.57 0.76 0.00 6.45 1.67 K intron_retention Rheb,CRMP chr3R + chr3R_1394762_1394927 chr3R_1394761_1394762;chr3R_1394927_1394928 chr3R_1394655_1394761;chr3R_1394928_1394993 98.15 95.56 98.18 100.00 96.43 97.50 100.00 98.88 98.04 100.00 97.50 100.00 100.00 100.00 100.00 95.83 97.56 100.00 98.31 99.25 100.00 98.08 100.00 97.37 100.00 100.00 97.50 100.00 96.15 98.04 100.00 93.88 95.45 98.61 100.00 97.50 96.55 95.65 96.43 93.75 98.15 100.00 97.78 98.18 97.56 94.44 98.41 98.28 98.91 100.00 95.74 96.88 96.67 97.22 98.15 100.00 95.74 98.70 K alternative_donor Vha55 chr3R - chr3R_8453298_8453399 chr3R_8453298_8453361 chr3R_8453171_8453297;chr3R_8453400_8453468 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.82 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention B4,REI_chr2L_13509793_13534906,EI_chr2L_13513471_13534906,I_chr2L_13513474_13549131,I_chr2L_13547304_13549131 chr2L - chr2L_13509793_13512959 chr2L_13509792_13509793;chr2L_13512959_13512960 chr2L_13509741_13509792;chr2L_13512960_13513464 1.02 1.10 0.00 5.00 3.33 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.69 0.00 1.48 0.32 0.72 0.00 0.00 1.52 8.59 2.06 1.52 0.00 0.00 1.64 1.39 0.00 0.82 1.19 0.76 1.07 2.53 0.76 1.23 2.56 1.55 1.08 1.50 1.14 0.00 2.44 1.42 1.03 0.00 1.52 2.23 0.00 1.02 1.36 3.39 K intron_retention Indy chr3L - chr3L_18824722_18825046 chr3L_18824721_18824722;chr3L_18825046_18825047 chr3L_18824595_18824721;chr3L_18825047_18825084 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 1.89 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7188 chr3L - chr3L_8300833_8300893 chr3L_8300832_8300833;chr3L_8300893_8300894 chr3L_8300825_8300832;chr3L_8300894_8301064 62.50 NA 46.15 73.33 NA NA 62.50 NA 42.86 NA NA 50.00 66.67 NA NA 88.89 NA NA NA 63.64 NA 40.00 NA NA 88.89 NA 57.14 47.83 NA NA NA NA NA NA NA NA NA NA NA NA NA 63.64 NA NA NA NA NA NA 71.43 50.00 NA NA NA NA NA 70.00 53.33 NA K intron_retention Lac,I_chr2R_8341560_8351848,RE_chr2R_8341564_8351844,I_chr2R_8348603_8351844 chr2R + chr2R_8341364_8351969 chr2R_8341363_8341364;chr2R_8351969_8351970 chr2R_8340696_8341363;chr2R_8351970_8353154 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Cep135,RI_chr3L_15120510_15120565 chr3L + chr3L_15120385_15120565 chr3L_15120510_15120565 chr3L_15120566_15120665;chr3L_15120117_15120384 5.81 NA 6.45 4.17 NA 0.00 11.11 8.11 4.76 NA NA 0.00 NA 7.69 13.04 7.69 0.00 14.29 17.24 1.96 NA 32.00 13.04 10.00 NA 4.00 14.29 NA 3.85 0.00 0.00 6.06 3.57 6.45 NA 15.00 4.55 NA 20.00 8.51 5.56 9.76 NA NA 0.00 4.65 NA 0.00 8.11 12.90 4.35 NA NA NA 0.00 0.00 NA 0.00 K alternative_donor CG4699 chr3R + chr3R_11624200_11624442;chr3R_11624133_11624442;chr3R_11624190_11624442 chr3R_11624127_11624442 chr3R_11624443_11624758;chr3R_11623809_11624126 18.00 22.22 20.37 26.37 26.42 20.83 9.23 14.63 15.74 19.44 18.75 14.89 9.52 18.00 16.90 23.53 14.00 22.50 15.79 21.49 13.95 8.57 23.76 20.99 20.75 12.24 15.29 23.81 18.69 14.53 17.86 23.08 15.73 21.69 14.81 23.38 23.36 21.43 26.09 2.68 13.64 16.24 9.30 23.46 17.39 13.19 12.96 19.60 16.51 20.00 13.16 14.58 21.21 16.00 17.54 26.98 21.28 18.05 K jcn_only_AD e(y)3,I_chrX_19530503_19530884,I_chrX_19530503_19531405 chrX - chrX_19530503_19530884;chrX_19530503_19531405;chrX_19530503_19532222 chrX_19530503_19531650 chrX_19530403_19530502;chrX_19532223_19532322 71.15 77.78 79.17 70.37 64.71 81.36 75.00 70.24 70.87 66.07 71.43 71.74 75.51 81.25 74.55 79.31 69.23 75.00 77.08 72.28 88.24 73.77 73.33 71.88 62.07 68.42 74.58 50.00 57.14 63.46 73.58 79.17 59.26 66.28 66.00 74.00 78.00 80.00 69.01 62.50 55.00 70.10 54.17 84.62 56.52 48.84 64.29 54.17 69.07 88.00 67.61 81.82 70.37 NA 63.64 78.26 87.50 57.89 K intron_retention RpII15 chr3R + chr3R_10134845_10134899 chr3R_10134844_10134845;chr3R_10134899_10134900 chr3R_10134776_10134844;chr3R_10134900_10135970 8.01 NA 0.00 7.14 11.11 6.67 10.53 8.70 13.16 NA 8.33 9.52 NA NA 7.69 7.69 NA 6.25 0.00 7.69 15.38 NA NA NA NA 10.00 50.00 54.55 63.64 NA 5.56 NA NA 6.67 NA NA 0.00 NA NA 10.34 NA 5.71 12.50 7.14 0.00 NA NA NA 5.88 12.50 NA NA NA NA 14.29 NA 11.11 0.00 K alternative_acceptor RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12916527_12918637 chr2R_12916527_12918629 chr2R_12916364_12916526;chr2R_12918638_12919153 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 NA 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 K alternative_last_exon CG13784,I_chr2L_7209439_7209522,I_chr2L_7219131_7219918 chr2L - chr2L_7208582_7218908;chr2L_7209654_7218908 chr2L_7218854_7218908 chr2L_7208417_7208581;chr2L_7209349_7209653 chr2L_7218643_7218853 chr2L_7218909_7219130 25.00 21.43 41.18 25.00 21.43 35.71 39.13 28.57 46.88 31.58 30.00 25.00 33.33 52.94 20.00 58.33 25.00 33.33 52.94 34.78 27.27 27.78 18.18 29.41 11.76 16.67 14.29 14.29 21.05 13.04 38.46 22.22 12.00 48.28 38.89 5.88 15.38 21.43 17.24 22.58 15.38 25.81 33.33 12.00 9.09 28.57 18.18 24.00 39.29 60.00 19.05 16.67 40.00 20.00 26.67 22.22 28.57 18.75 K alternative_donor CG13689 chr2L + chr2L_602950_603073 chr2L_603007_603073 chr2L_603074_603562;chr2L_602813_602949 100.00 100.00 85.71 100.00 NA NA 90.00 92.86 92.31 NA NA 100.00 100.00 NA 100.00 90.00 100.00 87.50 100.00 100.00 NA NA 100.00 NA NA 88.89 NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 NA NA 100.00 92.86 88.89 100.00 NA 100.00 NA 100.00 100.00 92.86 100.00 90.00 90.00 NA 88.89 NA 100.00 100.00 100.00 91.30 K intron_retention CG33111,noncoding_18661,I_chr3R_19627964_19628107,I_chr3R_19633752_19633821 chr3R - chr3R_19627964_19632347 chr3R_19627963_19627964;chr3R_19632347_19632348 chr3R_19627864_19627963;chr3R_19632348_19632486 6.28 NA NA 17.14 NA NA 15.79 5.56 5.88 NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA 6.67 NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 15.38 NA 15.38 NA NA NA NA NA 0.00 NA K intron_retention CG18749,noncoding_15296,CG33722 chr3R + chr3R_4069864_4069918 chr3R_4069863_4069864;chr3R_4069918_4069919 chr3R_4069831_4069863;chr3R_4069919_4071416 0.00 0.00 0.00 10.00 6.25 5.56 0.00 0.00 2.67 0.00 0.00 3.77 0.00 0.00 0.00 6.90 3.12 0.00 0.00 3.28 0.00 25.00 5.56 6.67 10.71 0.00 5.66 20.00 45.16 0.00 0.00 NA NA 5.13 0.00 10.71 7.14 0.00 7.69 6.90 NA 3.12 0.00 0.00 0.00 0.00 4.65 NA 2.22 0.00 8.11 0.00 0.00 3.45 0.00 0.00 0.00 NA K cassette Msp-300,I_chr2L_5197634_5197866 chr2L + chr2L_5204593_5205103 chr2L_5204593_5204835;chr2L_5204904_5205103 chr2L_5204836_5204903 chr2L_5204463_5204592;chr2L_5205104_5205389 100.00 99.09 100.00 100.00 100.00 100.00 98.90 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.29 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention sd,noncoding_23930,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15706472_15707633 chrX_15706471_15706472;chrX_15707633_15707634 chrX_15706468_15706471;chrX_15707634_15707635 90.00 100.00 100.00 86.67 NA 92.31 80.95 95.24 82.14 92.86 75.00 93.75 100.00 87.50 100.00 73.08 91.67 88.89 92.86 84.09 92.31 95.65 82.35 78.57 NA 92.31 73.68 81.82 93.55 92.11 93.75 94.74 88.57 94.74 82.35 100.00 90.00 NA 73.33 87.10 94.44 88.89 76.92 72.73 90.00 87.50 NA 98.04 96.00 NA 77.78 90.91 NA NA 88.89 88.89 NA 92.86 K jcn_only_AA hts,I_chr2R_15311185_15312327,I_chr2R_15311303_15311544,I_chr2R_15311303_15312026 chr2R - chr2R_15306111_15312327 chr2R_15311303_15312327 chr2R_15312328_15312346 84.31 94.29 81.43 73.68 90.91 84.31 79.73 87.10 84.76 NA 81.13 91.03 82.69 81.25 72.00 70.15 82.46 78.26 75.86 97.52 83.33 96.55 93.62 93.10 NA 90.38 93.10 60.00 NA NA 77.97 NA 57.69 78.26 NA 91.30 87.18 82.61 90.62 80.60 NA 90.00 84.00 82.69 NA NA NA NA 75.56 84.62 92.16 88.57 NA NA 84.38 90.32 95.45 NA K alternative_donor CG1657,I_chrX_11222451_11222508 chrX + chrX_11222441_11222508 chrX_11222451_11222508 chrX_11222509_11222608;chrX_11222351_11222440 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.45 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 6.67 0.00 1.85 2.38 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.27 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K intron_retention CG15609,I_chr2R_12897700_12897767,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12897679_12897767 chr2R_12897678_12897679;chr2R_12897767_12897768 chr2R_12897600_12897678;chr2R_12897768_12897834 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 1.55 0.00 1.49 0.00 1.85 1.75 3.41 4.48 0.00 2.90 0.00 2.45 0.00 0.00 0.72 0.00 1.45 3.23 0.98 0.00 0.00 2.41 2.44 2.99 1.96 2.04 0.00 3.61 0.00 0.00 0.00 0.91 1.33 2.16 0.00 2.08 0.00 0.00 0.00 1.01 0.82 0.00 0.84 0.00 0.00 0.00 1.23 0.00 0.00 0.00 K jcn_only_AD Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3295176;chr2R_3294566_3294634;chr2R_3294566_3294636;chr2R_3294566_3294638;chr2R_3294566_3295280;chr2R_3294566_3294642;chr2R_3294566_3294714 chr2R_3294566_3295244 chr2R_3294491_3294565;chr2R_3295281_3295302 40.45 41.67 37.50 76.92 NA 33.33 57.14 52.94 46.34 NA 48.48 44.44 20.00 52.38 41.03 55.17 42.86 35.00 42.31 53.73 43.33 8.00 37.50 48.39 43.75 33.33 30.43 41.94 28.12 37.50 31.43 50.00 33.33 47.50 NA NA 39.53 40.91 34.15 29.09 19.23 37.74 36.36 43.75 27.50 28.57 48.00 33.33 44.78 59.09 29.63 46.43 40.00 NA 56.67 37.50 21.74 39.29 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2816013;chr2R_2816342_2816577;chr2R_2816779_2817327;chr2R_2817604_2817753 chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817328_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Ugt36Bc chr2L + chr2L_16799134_16799680 chr2L_16799133_16799134;chr2L_16799680_16799681 chr2L_16799029_16799133;chr2L_16799681_16800520 0.00 NA NA NA NA NA 9.09 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 0.00 10.00 6.67 NA 0.00 7.14 14.29 NA 10.00 NA 0.00 NA NA 0.00 NA NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 0.00 NA NA NA NA 0.00 NA N jcn_only_AA capt,I_chr2L_1156009_1158078,I_chr2L_1163632_1163759 chr2L - chr2L_1153732_1158078 chr2L_1157987_1158078 chr2L_1158079_1158178;chr2L_1153632_1153731 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA vap,RI_chrX_15897976_15899352,I_chrX_15897976_15899654,I_chrX_15898011_15899654,I_chrX_15898427_15899017,RI_chrX_15898427_15899654,RI_chrX_15899237_15899352,I_chrX_15899237_15899654 chrX - chrX_15898427_15899654;chrX_15898011_15899654;chrX_15899510_15899654;chrX_15898478_15899654 chrX_15897976_15899654 chrX_15899655_15899705 2.50 NA NA NA NA NA 2.94 NA 11.11 NA NA 9.09 NA NA NA 5.88 NA NA NA 2.13 NA 2.94 11.11 NA 0.00 NA NA NA NA 0.00 3.45 NA NA 7.14 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA NA NA 2.86 NA NA 0.00 NA NA NA NA NA NA K intron_retention Tom40,I_chrX_7631717_7632414 chrX + chrX_7631717_7631905 chrX_7631716_7631717;chrX_7631905_7631906 chrX_7631617_7631716;chrX_7631906_7632168 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 K jcn_only_AD CG5694,RI_chr2L_10229956_10231366 chr2L - chr2L_10229956_10231538;chr2L_10229956_10231394 chr2L_10229956_10231282 chr2L_10229856_10229955;chr2L_10231539_10231648 56.45 NA NA 70.00 NA NA 61.29 42.86 56.45 NA NA 58.33 33.33 57.14 NA 61.82 NA 59.09 34.29 58.62 NA NA 46.15 42.86 NA NA NA NA NA NA 50.00 NA NA 58.14 NA NA NA NA NA 65.52 NA 46.88 NA NA NA NA NA 55.17 50.94 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG14290,RI_chr3R_14754008_14754110 chr3R - chr3R_14754008_14754110 chr3R_14754037_14754110 chr3R_14754111_14754179;chr3R_14753942_14754007 100.00 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 99.26 100.00 100.00 98.94 100.00 100.00 100.00 100.00 100.00 97.14 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.81 100.00 98.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.04 100.00 100.00 100.00 97.73 100.00 98.28 100.00 100.00 K intron_retention I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10061428_10061604 chr2R_10061427_10061428;chr2R_10061604_10061605 chr2R_10061376_10061427;chr2R_10061605_10061774 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.00 100.00 100.00 97.06 100.00 100.00 100.00 K intron_retention CG7091,RI_chr3R_8805541_8805680,I_chr3R_8809774_8809832 chr3R + chr3R_8805919_8805974 chr3R_8805918_8805919;chr3R_8805974_8805975 chr3R_8805677_8805918;chr3R_8805975_8806192 0.00 0.00 0.00 3.03 0.00 0.00 2.27 2.30 0.00 NA 0.00 1.23 0.00 3.77 0.00 2.90 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 N intron_retention Syb chr2R - chr2R_6137333_6138021 chr2R_6137332_6137333;chr2R_6138021_6138022 chr2R_6137005_6137332;chr2R_6138022_6138091 100.00 100.00 100.00 89.84 100.00 100.00 100.00 90.28 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD vig chr2L - chr2L_15067690_15067952;chr2L_15067690_15067995;chr2L_15067690_15067868;chr2L_15067690_15068029;chr2L_15067690_15067999 chr2L_15067690_15067915 chr2L_15066937_15067689;chr2L_15068030_15068031 92.47 87.50 94.94 94.27 94.03 87.27 95.29 89.47 92.47 89.00 95.86 90.38 92.42 90.37 93.71 93.50 94.55 93.27 95.93 92.25 94.70 89.31 94.96 86.42 96.30 95.04 95.00 84.02 86.36 87.50 94.37 87.30 86.60 95.90 94.29 92.21 84.62 88.41 92.75 83.15 83.78 94.10 94.74 89.01 87.91 87.30 92.11 82.12 94.46 95.56 94.06 83.53 95.19 94.12 95.48 92.75 90.80 84.28 K intron_retention trio,I_chr3L_999683_1009321 chr3L - chr3L_1026347_1026405 chr3L_1026346_1026347;chr3L_1026405_1026406 chr3L_1026262_1026346;chr3L_1026406_1026625 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD E_chr4_592469_594231,Ephrin,I_chr4_595055_597604,RI_chr4_596272_596341 chr4 + chr4_592737_594238;chr4_592646_594238;chr4_592490_594238;chr4_592593_594238;chr4_592469_594238;chr4_592410_594238 chr4_592798_594238 chr4_594239_594331;chr4_592404_592409 6.45 3.70 8.70 2.78 8.00 3.57 8.42 11.25 10.47 NA NA 7.59 4.76 7.89 5.88 4.65 6.25 NA 8.51 6.45 13.79 NA 3.70 NA 4.35 21.88 6.06 NA NA NA 3.23 NA NA 1.27 8.33 10.71 NA NA NA 0.00 NA 12.90 14.71 10.71 NA NA NA NA 4.82 NA 5.41 22.73 NA NA 3.03 NA NA NA K intron_retention glec,RI_chr3R_17677599_17677828 chr3R - chr3R_17677599_17681121 chr3R_17677598_17677599;chr3R_17681121_17681122 chr3R_17677499_17677598;chr3R_17681122_17681984 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 3.70 2.56 0.00 4.35 0.00 0.00 0.00 3.03 3.03 0.00 3.45 0.00 10.64 3.33 0.00 0.00 0.00 2.94 0.00 0.00 0.00 3.85 1.75 6.45 3.70 4.44 0.00 0.00 0.00 8.89 0.00 0.00 4.17 3.39 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Sop2,CG33649 chr2L - chr2L_13829644_13829709 chr2L_13829643_13829644;chr2L_13829709_13829710 chr2L_13829346_13829643;chr2L_13829710_13829727 90.68 94.74 92.17 82.94 90.68 92.93 93.43 89.45 92.69 95.12 88.98 91.57 84.31 90.00 89.21 88.74 87.30 85.00 88.03 88.79 92.56 95.76 90.24 94.87 98.18 89.39 91.25 95.65 92.54 89.55 89.55 81.13 75.81 89.30 92.59 95.00 92.50 92.11 92.93 94.74 77.50 86.82 92.11 91.94 79.37 86.67 91.26 75.81 86.19 93.06 91.03 88.31 93.33 96.43 91.54 88.30 89.38 64.52 K jcn_only_AD Pegarn chr3L + chr3L_12783425_12784534;chr3L_12783483_12784534 chr3L_12783350_12784534 chr3L_12784535_12784733;chr3L_12783320_12783349 21.71 NA NA NA NA NA NA NA 18.42 NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 31.82 NA NA NA NA NA 33.33 9.52 NA NA NA NA NA NA NA NA 25.00 K alternative_donor I_chrX_20906749_20909772,Mgstl,noncoding_25026 chrX + chrX_20913675_20914706 chrX_20914329_20914706 chrX_20914707_20914747;chrX_20913482_20913674 100.00 100.00 98.73 99.21 98.48 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.44 98.92 100.00 100.00 98.89 100.00 98.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.63 99.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.33 98.68 99.01 98.99 100.00 98.63 100.00 99.22 100.00 100.00 98.04 100.00 98.80 100.00 100.00 98.48 98.77 K jcn_only_AD CG9526,I_chr2L_6457114_6457365,I_chr2L_6457278_6457337 chr2L + chr2L_6457114_6457337 chr2L_6457278_6457337 chr2L_6457338_6457437;chr2L_6457014_6457113 1.66 1.69 1.59 1.63 0.00 0.00 1.28 1.05 0.00 5.26 4.08 2.06 2.00 0.00 1.33 0.00 0.00 1.85 0.00 0.00 2.63 12.12 3.23 4.55 2.04 0.00 1.33 1.85 2.78 1.56 8.14 1.32 0.00 0.00 3.77 1.54 1.25 2.00 0.00 2.61 3.61 1.05 2.78 3.64 0.00 0.00 2.38 1.69 2.08 6.67 0.00 1.92 NA 2.00 1.22 1.75 5.45 0.00 K cassette CG8176,I_chr3R_5348614_5348964 chr3R + chr3R_5348614_5349923 chr3R_5348614_5349257;chr3R_5349519_5349923 chr3R_5349258_5349518 chr3R_5348514_5348613;chr3R_5349924_5350029 33.33 32.08 35.71 35.16 22.37 31.33 24.71 22.04 25.52 45.95 32.99 21.76 23.68 29.09 28.46 37.29 29.17 37.89 25.19 34.06 27.68 55.21 38.89 45.74 30.30 30.30 37.72 55.56 34.85 33.33 30.53 40.32 54.76 26.03 36.47 27.18 46.43 40.51 37.00 41.18 29.41 27.05 26.67 32.32 56.14 36.49 39.44 42.42 27.31 29.33 34.04 40.51 35.29 33.33 28.28 30.49 32.65 40.00 K alternative_acceptor l(2)k05819,I_chr2L_4396173_4396266 chr2L + chr2L_4396173_4396809 chr2L_4396173_4396266 chr2L_4396143_4396172;chr2L_4396810_4396906 6.98 7.32 4.44 4.40 1.92 5.00 5.32 10.29 5.88 9.09 0.00 20.63 37.50 5.77 6.00 3.85 4.65 6.00 4.92 6.09 4.17 35.00 9.26 7.84 5.71 2.67 5.36 1.82 5.41 21.43 9.52 3.57 12.20 3.80 11.54 23.08 4.60 10.71 8.77 9.09 7.69 6.38 2.22 8.00 5.56 8.70 6.90 23.08 6.98 10.71 9.52 7.89 8.33 8.33 6.15 13.33 8.33 41.67 K intron_retention nimC1,I_chr2L_13975880_13975977 chr2L - chr2L_13975880_13976476 chr2L_13975879_13975880;chr2L_13976476_13976477 chr2L_13975780_13975879;chr2L_13976477_13976753 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 1.23 NA 0.00 5.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 NA NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA 10.00 NA NA NA NA 0.00 0.00 NA NA NA NA NA 6.35 NA NA 10.53 NA NA 1.96 NA NA NA K intron_retention mys,I_chrX_7958795_7961094 chrX + chrX_7958795_7959480 chrX_7958794_7958795;chrX_7959480_7959481 chrX_7958695_7958794;chrX_7959481_7959565 5.26 6.49 7.61 5.49 12.63 6.62 12.06 5.43 6.99 3.45 6.98 4.99 20.00 5.71 6.09 5.40 9.35 4.41 6.88 7.29 5.84 1.53 3.08 1.42 3.28 9.47 3.00 18.92 2.61 7.55 5.83 4.29 0.88 4.96 2.27 5.04 3.92 2.58 3.92 6.62 0.00 5.21 7.25 2.91 5.26 2.88 1.94 6.58 6.15 6.32 3.61 5.26 2.11 1.83 6.82 3.50 0.68 3.12 K intron_retention CG9836,I_chr3R_4654041_4664113,I_chr3R_4749124_4756437 chr3R - chr3R_4649024_4649074 chr3R_4649023_4649024;chr3R_4649074_4649075 chr3R_4648990_4649023;chr3R_4649075_4649523 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.80 100.00 K intron_retention CG17689 chr3L + chr3L_13501646_13502149 chr3L_13501645_13501646;chr3L_13502149_13502150 chr3L_13500035_13501645;chr3L_13502150_13502434 8.33 10.53 10.53 16.00 NA 10.00 0.00 9.09 9.76 3.70 NA 5.56 33.33 14.29 3.85 14.29 NA NA 0.00 9.52 0.00 19.67 9.30 9.68 10.34 8.33 7.41 8.33 12.77 2.50 0.00 3.33 3.28 18.52 14.29 13.79 6.25 10.81 6.15 8.00 11.76 16.67 NA 10.81 1.92 10.87 3.85 8.33 10.26 8.00 10.81 4.76 0.00 6.67 0.00 6.06 4.35 5.26 K intron_retention Synd chr3R + chr3R_16664346_16664400 chr3R_16664345_16664346;chr3R_16664400_16664401 chr3R_16664235_16664345;chr3R_16664401_16664609 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ras64B,I_chr3L_4139414_4139906,RI_chr3L_4139526_4139906,I_chr3L_4139773_4139906 chr3L + chr3L_4139260_4139906 chr3L_4139259_4139260;chr3L_4139906_4139907 chr3L_4139041_4139259;chr3L_4139907_4139994 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585739_2586265;chr3L_2585739_2586402;chr3L_2585739_2586413 chr3L_2585739_2586036 chr3L_2585639_2585738;chr3L_2586414_2586502 12.24 12.50 10.23 9.73 8.33 10.26 19.49 8.03 11.84 17.24 11.11 9.62 10.29 8.70 10.10 11.04 12.28 12.00 12.22 8.48 11.86 17.05 12.77 15.52 15.15 11.36 16.67 18.18 22.68 12.50 8.04 9.68 15.48 11.19 15.07 12.99 15.00 12.70 10.91 13.97 18.46 9.55 11.94 18.09 7.14 9.86 13.51 13.82 9.14 12.50 13.27 12.96 14.71 11.54 8.18 12.24 16.67 12.70 K intron_retention unc-5,E_chr2R_11238100_11240757,I_chr2R_11252444_11252570 chr2R + chr2R_11246255_11247919 chr2R_11246254_11246255;chr2R_11247919_11247920 chr2R_11246084_11246254;chr2R_11247920_11247973 0.00 0.00 0.00 3.57 0.00 NA 0.00 0.00 0.00 0.00 0.00 4.35 NA NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 1.96 0.00 0.00 NA 0.00 9.09 0.00 0.00 0.00 NA 6.67 0.00 0.00 0.00 6.45 0.00 0.00 6.67 NA 4.65 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.35 NA NA 0.00 K intron_retention I_chr2R_2700203_2700285,koi chr2R + chr2R_2704065_2704121 chr2R_2704064_2704065;chr2R_2704121_2704122 chr2R_2702565_2704064;chr2R_2704122_2704219 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.17 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 3.03 0.00 6.67 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD Rip11,RI_chrX_18530353_18530870,RI_chrX_18544139_18544185 chrX - chrX_18534444_18541222 chrX_18534444_18534510 chrX_18534299_18534443;chrX_18541223_18541623 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG15011 chr3L - chr3L_4257716_4257771 chr3L_4257715_4257716;chr3L_4257771_4257772 chr3L_4257584_4257715;chr3L_4257772_4257888 10.67 14.29 13.64 10.81 NA 11.76 11.54 7.41 11.63 NA NA 13.79 13.33 5.56 0.00 21.43 6.67 11.54 0.00 15.56 0.00 0.00 12.00 13.04 NA 0.00 8.33 NA NA 0.00 8.70 0.00 0.00 3.03 NA 0.00 9.52 12.50 0.00 12.50 NA 12.12 NA NA 11.76 7.41 7.41 NA 12.12 5.26 0.00 11.11 0.00 17.65 18.75 18.18 25.00 10.53 K intron_retention Hlc,snoRNA:MeU6-A47 chrX - chrX_21257806_21258000 chrX_21257805_21257806;chrX_21258000_21258001 chrX_21257377_21257805;chrX_21258001_21258752 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 K alternative_acceptor Plip chr3R + chr3R_19584641_19584711 chr3R_19584641_19584699 chr3R_19584572_19584640;chr3R_19584712_19584774 100.00 100.00 100.00 90.91 94.74 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Sec61alpha chr2L - chr2L_6477898_6477970 chr2L_6477897_6477898;chr2L_6477970_6477971 chr2L_6477129_6477897;chr2L_6477971_6479062 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ent1 chr2L - chr2L_357749_357815 chr2L_357748_357749;chr2L_357815_357816 chr2L_357423_357748;chr2L_357816_357903 95.83 94.44 100.00 97.56 95.00 89.47 94.44 97.67 92.45 NA 94.44 95.92 95.65 88.46 95.45 95.83 94.74 95.24 95.65 98.25 94.44 100.00 100.00 91.67 100.00 85.71 93.75 100.00 100.00 93.33 95.83 100.00 94.44 97.50 100.00 NA 95.65 88.89 89.47 96.30 100.00 97.83 95.24 100.00 91.67 100.00 100.00 100.00 96.00 100.00 100.00 94.12 100.00 100.00 96.67 100.00 94.74 93.33 K jcn_only_AD Mpcp chr3L + chr3L_14530949_14531103;chr3L_14530935_14531103 chr3L_14530803_14531103 chr3L_14531104_14531521;chr3L_14530797_14530802 98.07 97.89 97.73 96.93 98.86 98.64 98.03 95.80 99.00 99.79 99.04 97.45 98.95 96.98 98.53 95.47 99.69 98.09 97.81 98.15 98.50 98.99 97.18 98.33 98.26 97.70 96.56 98.35 96.75 96.04 97.92 96.27 97.67 97.02 95.15 93.05 99.50 98.41 98.95 98.40 94.07 98.86 97.61 98.07 98.55 99.55 97.77 98.60 98.59 98.35 96.05 98.24 98.72 95.26 97.70 98.78 97.97 97.31 K intron_retention CG7112 chr3L + chr3L_8341540_8341601 chr3L_8341539_8341540;chr3L_8341601_8341602 chr3L_8341356_8341539;chr3L_8341602_8341789 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K intron_retention Pfk,I_chr2R_5999081_6000140,E_chr2R_6001157_6001630 chr2R + chr2R_6000676_6001630 chr2R_6000675_6000676;chr2R_6001630_6001631 chr2R_6000521_6000675;chr2R_6001631_6001730 12.50 13.79 17.65 21.05 20.00 15.79 26.67 12.50 18.92 4.55 NA 19.35 NA NA 30.77 7.14 NA NA NA 4.29 NA 15.38 7.55 12.00 10.00 NA 17.50 28.57 25.00 3.45 30.00 NA 10.00 9.52 15.38 NA 6.15 12.50 10.87 28.12 NA 9.38 NA 6.67 0.00 8.33 2.70 20.00 16.00 0.00 10.87 19.23 NA 0.00 21.43 0.00 0.00 NA K alternative_donor CG33655,I_chr2R_17207309_17207365 chr2R - chr2R_17207309_17207369 chr2R_17207309_17207365 chr2R_17207209_17207308;chr2R_17207370_17207465 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Hip1 chr3L - chr3L_12763439_12763494 chr3L_12763438_12763439;chr3L_12763494_12763495 chr3L_12763009_12763438;chr3L_12763495_12764241 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 2.78 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 1.04 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention Nup75,I_chr2R_14058825_14059758,I_chr2R_14058954_14059942 chr2R - chr2R_14052608_14052664 chr2R_14052607_14052608;chr2R_14052664_14052665 chr2R_14052460_14052607;chr2R_14052665_14052855 0.00 0.00 0.00 3.33 0.00 0.00 0.00 1.39 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention shep,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5155711_5156456 chr3L_5155710_5155711;chr3L_5156456_5156457 chr3L_5155556_5155710;chr3L_5156457_5156803 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 22.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 K intron_retention Indy chr3L - chr3L_18825085_18833472 chr3L_18825084_18825085;chr3L_18833472_18833473 chr3L_18825047_18825084;chr3L_18833473_18833593 21.05 19.05 13.95 16.39 12.90 21.62 33.33 27.40 16.47 NA 14.71 24.62 21.05 24.00 22.22 25.37 16.67 24.24 21.62 26.44 13.79 2.70 13.51 22.22 21.43 19.35 30.77 26.67 30.77 17.65 28.95 NA 26.32 28.81 35.29 36.84 0.00 NA 12.00 12.50 NA 18.67 15.79 5.56 0.00 9.52 0.00 33.33 26.88 NA 25.00 23.08 11.11 NA 21.95 14.29 4.35 8.70 K alternative_acceptor I_chr3L_207277_208117,pyx chr3L - chr3L_221504_221588 chr3L_221525_221588 chr3L_221589_221782;chr3L_221286_221503 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N cassette Myo31DF,I_chr2L_10506249_10506683,I_chr2L_10506446_10506542 chr2L - chr2L_10496849_10505925 chr2L_10496849_10497852;chr2L_10498156_10505925 chr2L_10497853_10498155 chr2L_10496629_10496848;chr2L_10505926_10506106 100.00 100.00 100.00 95.29 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.20 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention I_chr3L_20306985_20307177,CG6680 chr3L + chr3L_20310517_20310578 chr3L_20310516_20310517;chr3L_20310578_20310579 chr3L_20310328_20310516;chr3L_20310579_20310888 31.43 37.14 36.84 42.42 50.00 36.00 27.59 41.18 34.25 30.77 28.57 29.23 13.64 26.83 42.86 28.57 59.26 47.37 38.89 37.93 36.84 20.00 34.15 20.00 47.06 56.25 50.00 NA 50.00 22.58 26.92 15.38 30.00 44.68 36.00 42.11 28.95 24.00 30.77 26.00 29.17 50.00 54.17 37.14 28.57 23.21 11.76 33.33 30.56 31.82 25.00 25.93 40.43 27.78 44.44 31.03 15.85 14.61 K intron_retention l(2)03709,I_chr2R_14707617_14707700,I_chr2R_14708048_14708095 chr2R + chr2R_14708789_14708997 chr2R_14708788_14708789;chr2R_14708997_14708998 chr2R_14708689_14708788;chr2R_14708998_14709059 98.45 100.00 98.72 99.40 100.00 95.08 99.55 98.74 99.26 100.00 100.00 98.45 97.96 98.65 100.00 97.03 100.00 100.00 98.90 99.25 98.11 96.88 97.48 97.39 98.80 97.80 97.39 98.28 98.72 95.52 97.70 100.00 100.00 100.00 98.68 93.83 95.59 97.44 95.89 98.47 98.53 99.19 100.00 96.00 86.54 97.85 97.53 97.67 98.33 98.08 98.33 97.06 98.48 96.34 97.18 98.94 97.62 100.00 K intron_retention TfIIA-L chr3R + chr3R_23081386_23081447 chr3R_23081385_23081386;chr3R_23081447_23081448 chr3R_23081178_23081385;chr3R_23081448_23081692 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD mge,RI_chr3L_3908532_3908778 chr3L - chr3L_3908532_3909003 chr3L_3908532_3908778 chr3L_3908432_3908531;chr3L_3909004_3909039 0.00 0.00 0.00 0.00 2.94 NA 4.76 2.38 0.00 0.00 17.24 0.00 5.00 0.00 2.70 NA 0.00 2.86 0.00 2.17 3.33 2.00 1.69 0.00 0.00 0.00 1.37 0.00 3.45 0.00 2.70 3.33 0.00 2.27 0.00 0.00 1.43 0.00 0.00 0.00 0.00 2.70 9.52 0.00 0.00 0.00 1.56 0.00 1.69 0.00 2.17 0.00 0.00 2.00 2.27 1.85 4.71 1.85 K alternative_donor CG1657 chrX + chrX_11219544_11222056;chrX_11219604_11222056 chrX_11219635_11222056 chrX_11222057_11222225;chrX_11219475_11219543 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 K intron_retention I_chr3R_23771063_23772599,CG4951,RI_chr3R_23778808_23778861 chr3R - chr3R_23778405_23778478 chr3R_23778404_23778405;chr3R_23778478_23778479 chr3R_23778197_23778404;chr3R_23778479_23778646 33.33 17.86 31.25 53.85 17.65 40.91 47.83 31.58 18.60 26.67 26.32 37.84 35.00 41.18 27.59 15.62 40.00 20.00 39.13 40.43 30.00 27.78 28.57 31.43 37.50 50.00 17.39 NA 29.17 30.00 65.00 33.33 42.86 39.39 25.00 43.75 28.57 15.38 28.57 36.67 53.85 45.10 40.00 33.33 47.37 51.11 34.48 37.50 41.67 20.00 23.08 32.14 33.33 22.73 25.93 32.26 40.62 45.10 K intron_retention Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19546876_19547916 chr2R_19546875_19546876;chr2R_19547916_19547917 chr2R_19546867_19546875;chr2R_19547917_19547942 100.00 93.75 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 96.43 100.00 100.00 100.00 96.43 NA 100.00 100.00 100.00 NA 100.00 96.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 96.55 100.00 100.00 NA 100.00 100.00 100.00 95.24 NA 100.00 100.00 NA 100.00 100.00 90.00 100.00 90.00 K alternative_donor CG2789 chr2L + chr2L_560306_560369 chr2L_560311_560369 chr2L_560370_560522;chr2L_560097_560305 95.28 95.12 94.06 97.71 96.72 94.12 99.42 96.75 96.43 93.24 94.37 97.39 90.16 98.63 96.81 96.49 94.74 89.53 93.41 91.67 92.78 95.24 96.82 95.00 97.94 95.45 98.41 93.91 99.15 94.52 91.15 98.32 98.23 96.60 95.35 98.82 92.52 98.08 97.33 93.85 97.97 96.13 93.85 91.47 91.49 95.28 96.36 94.30 93.06 97.08 91.30 91.59 89.87 96.26 97.09 94.63 96.39 91.61 K intron_retention E(bx),I_chr3L_240127_240176,I_chr3L_246324_246699 chr3L - chr3L_240117_240176 chr3L_240116_240117;chr3L_240176_240177 chr3L_240027_240116;chr3L_240177_240276 59.29 52.63 55.29 59.80 59.32 56.14 35.87 50.75 60.14 46.67 57.63 53.33 57.35 65.75 63.95 65.14 50.00 48.75 60.49 57.92 55.38 51.09 65.85 60.29 69.84 76.39 77.08 73.58 60.75 66.30 52.69 68.66 72.32 62.50 62.16 58.16 59.38 60.47 51.90 45.34 67.09 59.29 59.02 60.26 54.79 48.60 46.55 53.15 60.49 62.07 55.34 55.32 53.70 50.00 61.54 56.90 63.04 63.01 K intron_retention MRG15,l(3)neo43,F_chr3R_11104164_11104239 chr3R - chr3R_11103623_11103682 chr3R_11103622_11103623;chr3R_11103682_11103683 chr3R_11103508_11103622;chr3R_11103683_11103879 0.00 0.00 4.44 1.72 0.00 0.00 0.00 2.13 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 NA 0.00 0.00 2.63 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3R_22696095_22697413,Rb97D chr3R - chr3R_22699721_22699788 chr3R_22699720_22699721;chr3R_22699788_22699789 chr3R_22699582_22699720;chr3R_22699789_22700512 10.76 7.69 0.00 18.52 NA 14.29 13.64 12.50 9.30 8.70 NA 11.76 21.05 NA 7.41 20.00 NA 12.50 9.52 15.56 0.00 0.00 13.33 19.23 10.00 NA 18.52 12.50 11.11 0.00 NA NA 8.00 19.05 NA 0.00 9.43 5.00 12.20 10.81 NA 10.53 NA 6.45 10.71 8.70 13.04 NA 20.83 6.06 9.09 9.52 11.76 6.06 22.22 3.85 13.33 14.29 K alternative_donor eIF5,noncoding_24049,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15885416_15885925;chrX_15885416_15885854;chrX_15885416_15885783 chrX_15885416_15885611 chrX_15885316_15885415;chrX_15885926_15885954 0.00 0.00 0.00 3.57 NA 0.00 0.00 0.00 3.03 NA 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 4.55 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 K jcn_only_AA CG15032,I_chrX_15200613_15200682 chrX + chrX_15200613_15204410 chrX_15200613_15200682 chrX_15200513_15200612;chrX_15204411_15205252 0.00 0.00 0.00 1.23 0.00 0.00 1.69 1.37 0.00 0.00 3.85 1.75 0.00 0.00 2.33 0.00 0.00 4.00 0.00 0.00 0.00 0.00 2.50 NA 0.00 0.00 5.56 5.88 1.59 3.39 0.00 0.00 0.00 3.23 0.00 2.38 0.00 0.00 1.89 1.05 0.00 2.63 0.00 0.00 4.17 1.92 NA 0.00 1.37 NA 3.33 0.00 0.00 NA 0.00 NA 0.00 0.00 K intron_retention eIF-4E,RI_chr3L_9394054_9394756,I_chr3L_9394308_9394756,RI_chr3L_9394468_9394631,I_chr3L_9394468_9394659,I_chr3L_9394468_9395155,I_chr3L_9394468_9395240,I_chr3L_9394468_9395446,I_chr3L_9394685_9394756,RI_chr3L_9394707_9395016,RI_chr3L_9394707_9395198,I_chr3L_9394707_9395309,I_chr3L_9394819_9394884,I_chr3L_9394819_9395016,I_chr3L_9394819_9395198,I_chr3L_9394819_9395379 chr3L - chr3L_9394468_9395198 chr3L_9394467_9394468;chr3L_9395198_9395199 chr3L_9394368_9394467;chr3L_9395199_9395223 96.15 100.00 95.65 88.64 93.75 92.31 97.92 92.11 93.85 93.33 100.00 98.08 93.75 100.00 100.00 100.00 95.00 100.00 100.00 94.87 100.00 100.00 94.12 100.00 100.00 93.75 100.00 94.74 95.00 95.65 94.44 87.50 100.00 96.97 95.00 100.00 100.00 100.00 100.00 96.97 84.62 97.14 92.86 95.65 92.86 96.15 95.24 82.61 97.92 95.45 92.31 95.24 100.00 100.00 100.00 100.00 100.00 92.59 K intron_retention dnc,I_chrX_3150245_3150319,I_chrX_3150351_3152643 chrX + chrX_3150245_3152646 chrX_3150244_3150245;chrX_3152646_3152647 chrX_3150235_3150244;chrX_3152647_3152733 62.50 NA NA 63.64 NA NA NA 58.33 NA NA NA NA NA NA NA 62.50 NA NA NA 47.62 NA NA NA NA NA NA NA NA NA NA 72.73 NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 58.82 NA NA NA NA NA NA NA NA NA K cassette Nipsnap,RI_chrX_15965934_15967435 chrX - chrX_15965934_15967435 chrX_15965934_15967059;chrX_15967175_15967435 chrX_15967060_15967174 chrX_15965834_15965933;chrX_15967436_15967464 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 97.83 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Nmda1,R_chr2R_8766216_8766562,I_chr2R_8766652_8766956,I_chr2R_8766728_8766791,I_chr2R_8766728_8767623 chr2R - chr2R_8766728_8767193 chr2R_8766727_8766728;chr2R_8767193_8767194 chr2R_8766713_8766727;chr2R_8767194_8767290 0.00 0.00 0.00 1.26 0.00 4.17 1.69 1.46 1.72 0.00 1.06 0.00 0.00 1.52 3.28 0.00 2.17 3.45 1.19 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 1.85 0.00 0.00 0.00 0.00 1.61 2.78 0.00 0.00 0.00 0.00 0.00 0.00 2.74 1.72 0.00 0.00 0.00 0.00 NA 1.71 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 NA K intron_retention rho-7,noncoding_6143 chr2R - chr2R_7876069_7876127 chr2R_7876068_7876069;chr2R_7876127_7876128 chr2R_7876008_7876068;chr2R_7876128_7876254 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 21.43 5.00 0.00 10.53 0.00 16.67 12.24 17.65 0.00 2.27 0.00 0.00 0.00 3.33 16.67 0.00 0.00 0.00 0.00 0.00 2.13 NA 0.00 0.00 4.17 0.00 4.35 0.00 2.70 1.64 0.00 0.00 0.00 0.00 0.00 0.00 4.44 K intron_retention PhKgamma,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11592631_11594653 chrX_11592630_11592631;chrX_11594653_11594654 chrX_11592533_11592630;chrX_11594654_11595012 12.13 0.00 NA NA NA NA 11.11 15.38 12.50 NA NA 10.53 NA NA NA NA NA NA NA 13.04 NA 46.15 13.64 11.11 33.33 NA 25.00 NA NA 21.43 NA NA 38.46 NA 7.69 NA 0.00 NA NA 19.05 NA NA NA 11.76 NA 0.00 0.00 30.77 6.67 0.00 13.33 NA NA NA NA NA 0.00 NA K intron_retention CG13568,I_chr2R_19941242_19941302 chr2R - chr2R_19940843_19940896 chr2R_19940842_19940843;chr2R_19940896_19940897 chr2R_19940721_19940842;chr2R_19940897_19940934 34.84 NA NA NA NA NA NA 54.55 36.36 NA NA NA NA NA NA NA NA NA NA 31.58 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG16940,I_chr3L_212740_212843,I_chr3L_212783_212843,noncoding_9585,Kaz1-ORFA_Kaz1-ORFB chr3L + chr3L_212785_212843;chr3L_212308_212843 chr3L_212788_212843 chr3L_212844_212943;chr3L_212275_212307 0.00 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA G-salpha60A chr2R + chr2R_19833785_19833969 chr2R_19833785_19833960 chr2R_19833660_19833784;chr2R_19833970_19834043 23.46 24.68 22.22 21.59 24.64 19.18 15.46 21.86 26.17 23.40 23.53 17.54 18.75 21.95 25.49 21.38 22.73 30.00 23.20 17.04 30.49 16.92 28.57 30.26 21.88 30.00 30.67 31.67 16.00 26.51 12.82 22.14 26.28 25.40 28.57 29.49 34.21 26.83 16.95 19.33 22.61 18.99 25.64 25.00 20.49 27.41 21.37 16.96 22.56 23.64 33.33 34.85 25.45 35.14 20.49 23.46 36.84 16.08 K alternative_donor F_chrX_15764251_15765393,CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15764522_15765393;chrX_15764247_15765393;chrX_15764620_15765393;chrX_15764599_15765393 chrX_15764432_15765393 chrX_15765394_15765493;chrX_15764236_15764246 31.52 40.00 50.00 28.00 28.57 40.00 32.14 25.71 34.21 0.00 50.00 32.00 12.50 44.44 14.29 27.03 20.00 41.67 15.79 20.00 50.00 0.00 33.33 66.67 42.86 30.00 41.67 NA 20.00 20.00 44.44 0.00 22.22 25.00 36.36 37.50 25.00 0.00 33.33 40.00 16.67 31.03 53.33 20.00 33.33 33.33 50.00 23.08 43.59 25.00 46.15 14.29 NA 80.00 28.57 NA 50.00 12.50 K alternative_donor mub,RI_chr3L_21901021_21901163,I_chr3L_21908756_21909179 chr3L + chr3L_21873042_21881733 chr3L_21873109_21881733 chr3L_21881734_21881792;chr3L_21872950_21873041 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Traf-like,I_chrX_16309163_16309641,I_chrX_16309212_16309689,I_chrX_16309561_16309641,I_chrX_16309561_16309689,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16309561_16309689 chrX_16309560_16309561;chrX_16309689_16309690 chrX_16309461_16309560;chrX_16309690_16309741 95.45 96.43 97.22 96.77 96.43 95.45 96.08 95.52 95.18 91.67 93.33 98.18 93.55 96.88 96.88 100.00 97.44 97.44 97.30 89.66 93.33 97.44 89.47 97.44 95.65 92.59 96.97 93.75 100.00 94.74 83.33 94.12 95.83 98.15 85.19 77.27 90.24 96.55 97.50 91.43 85.71 91.89 96.67 100.00 100.00 95.45 91.67 93.33 94.64 96.30 92.68 95.24 94.74 95.45 97.14 92.59 97.44 93.75 K alternative_donor twin,RI_chr3R_20032242_20045321 chr3R - chr3R_20046286_20047514;chr3R_20046286_20047526 chr3R_20046286_20047530 chr3R_20046254_20046285;chr3R_20047531_20047647 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA 9.09 NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 K jcn_only_AD RpL35,I_chrX_5566913_5567030,I_chrX_5567168_5567220 chrX + chrX_5566913_5567030;chrX_5566556_5567030 chrX_5566909_5567030 chrX_5567031_5567130;chrX_5566554_5566555 93.89 96.19 94.01 93.47 89.93 92.68 94.16 93.38 91.32 92.10 90.81 93.28 92.85 94.32 92.19 96.48 91.22 93.89 94.56 94.69 92.73 95.14 96.43 94.89 94.41 93.69 97.59 91.10 96.36 92.56 96.24 92.46 81.99 94.61 94.27 97.10 90.05 93.32 91.06 76.57 96.02 91.25 94.19 88.40 91.87 96.93 96.12 94.59 94.15 96.35 98.02 91.09 89.07 98.14 93.43 96.37 96.04 92.08 K alternative_acceptor CG31122 chr3R - chr3R_14233936_14233996 chr3R_14233939_14233996 chr3R_14233997_14234162;chr3R_14233613_14233935 13.04 16.92 9.09 14.71 10.00 12.77 14.04 10.00 8.63 17.50 17.39 13.64 11.11 7.27 9.68 14.81 22.22 8.47 11.36 10.29 13.33 11.81 15.79 21.88 12.96 8.16 15.12 19.18 9.76 11.00 15.69 15.22 13.04 11.86 15.62 13.04 16.36 12.99 15.13 15.38 15.09 8.33 11.63 13.33 18.18 9.72 11.39 15.38 9.78 17.24 9.48 15.87 10.87 14.49 12.28 10.87 13.21 15.62 K intron_retention CG31523,I_chr3R_294322_304799,RI_chr3R_298911_304354 chr3R - chr3R_292566_293015 chr3R_292565_292566;chr3R_293015_293016 chr3R_291179_292565;chr3R_293016_293294 0.77 1.16 0.54 0.93 0.29 0.43 2.30 0.61 0.88 0.00 0.00 0.79 0.74 0.54 0.39 0.37 0.00 2.18 0.85 0.73 0.28 1.91 1.23 1.14 2.39 1.60 1.88 2.48 3.09 0.75 0.77 0.32 1.18 0.83 0.56 1.53 0.69 0.50 0.31 0.77 3.14 0.56 0.28 1.38 0.45 0.95 1.08 0.41 1.05 1.04 0.83 2.19 0.37 0.53 0.78 0.51 0.56 0.30 K intron_retention DmL37a,I_chr2L_5071155_5071224 chr2L + chr2L_5071158_5071226 chr2L_5071157_5071158;chr2L_5071226_5071227 chr2L_5071103_5071157;chr2L_5071227_5071324 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 N cassette dpr3 chr2L - chr2L_2059984_2065610 chr2L_2059984_2061974;chr2L_2062300_2065610 chr2L_2061975_2062299 chr2L_2058819_2059983;chr2L_2065611_2065743 100.00 100.00 100.00 87.61 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K multi_cassette drpr,I_chr3L_1718097_1718705,I_chr3L_1718154_1723579,I_chr3L_1720385_1723579,CG18171 chr3L - chr3L_1718097_1723579 chr3L_1718097_1718705;chr3L_1719746_1719922;chr3L_1720170_1723579 chr3L_1718706_1719745;chr3L_1719923_1720169 chr3L_1718054_1718096;chr3L_1723580_1723679 85.71 85.71 75.00 41.67 79.17 90.48 88.00 77.78 82.61 91.67 81.25 85.19 86.36 94.74 95.65 77.78 94.12 94.74 76.00 91.49 93.33 82.86 75.86 90.00 80.00 74.07 87.50 90.91 76.47 80.95 85.71 85.71 90.00 81.82 92.86 83.33 86.67 84.21 92.00 80.56 91.67 87.23 83.33 93.75 73.68 93.75 84.21 73.08 75.00 89.47 81.82 90.91 70.59 100.00 89.29 92.86 80.95 72.22 K cassette M(2)21AB,I_chr2L_110878_111037,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_110878_112689;chr2L_110878_111906 chr2L_110878_111004;chr2L_111118_112689,chr2L_111118_111906 chr2L_111005_111117 chr2L_110778_110877;chr2L_112690_112789 3.25 3.64 3.03 2.16 1.43 3.23 7.32 3.46 3.74 2.45 1.40 3.11 3.42 2.05 4.76 4.88 3.82 8.28 2.54 3.20 1.59 16.31 3.17 3.51 3.17 3.31 4.01 7.25 6.19 4.14 3.64 2.82 3.64 3.82 4.82 6.59 3.14 3.79 3.01 2.25 3.11 3.71 3.17 2.76 7.88 3.28 2.99 2.20 2.08 3.25 4.32 3.07 2.76 3.50 1.81 3.12 2.82 3.27 K intron_retention hrg chr2R - chr2R_15553736_15553799 chr2R_15553735_15553736;chr2R_15553799_15553800 chr2R_15553030_15553735;chr2R_15553800_15554072 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 2.56 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499338_1499771,chr3L_1499880_1501798;chr3L_1499338_1500244,chr3L_1500389_1501798 chr3L_1499338_1501345,chr3L_1501407_1501798 chr3L_1499772_1499879;chr3L_1500245_1500388 chr3L_1501346_1501406 chr3L_1499043_1499337;chr3L_1501799_1501892 20.00 NA 20.00 0.00 NA NA NA 8.33 28.57 0.00 60.00 7.69 NA NA 25.00 16.67 NA NA 12.50 33.33 NA 0.00 30.00 20.00 37.50 0.00 14.29 16.67 NA NA 21.74 NA 40.00 10.00 42.86 11.11 NA 20.00 NA 40.00 33.33 23.08 NA 25.00 0.00 40.00 NA 50.00 27.27 14.29 25.00 20.00 NA 20.00 25.00 33.33 0.00 20.00 K cassette kst,I_chr3L_3365752_3365816,I_chr3L_3367008_3367514 chr3L + chr3L_3366311_3367514 chr3L_3366311_3366443;chr3L_3367011_3367514 chr3L_3366444_3367010 chr3L_3366200_3366310;chr3L_3367515_3367614 67.04 67.08 67.85 94.81 66.20 68.80 49.17 54.42 63.65 69.31 48.12 68.10 38.70 57.85 57.22 94.61 55.23 50.71 58.15 57.23 60.51 83.41 74.82 69.32 72.80 55.91 67.64 79.39 78.27 86.81 61.40 72.23 72.78 58.07 67.04 70.00 75.25 74.34 69.47 64.41 65.39 61.24 56.25 64.63 67.50 69.68 64.32 69.88 53.82 70.46 65.89 75.00 67.01 66.88 51.78 67.58 66.18 70.01 N alternative_donor CG1115,F_chr3R_1052705_1053045 chr3R + chr3R_1052701_1053045;chr3R_1052718_1053045 chr3R_1052705_1053045 chr3R_1053046_1053145;chr3R_1052605_1052700 2.13 0.00 16.00 2.50 8.70 21.05 0.00 0.00 0.00 0.00 13.64 0.00 14.81 0.00 14.81 0.00 7.14 7.69 12.90 0.00 10.53 7.41 2.04 0.00 9.52 10.00 0.00 11.43 13.04 9.38 14.71 5.00 9.52 2.13 0.00 9.09 0.00 0.00 2.17 0.00 9.38 0.00 4.55 0.00 9.38 0.00 2.00 14.29 0.00 0.00 1.89 0.00 0.00 0.00 11.11 0.00 1.25 10.00 K intron_retention RI_chr2R_9104206_9104265,CG4663 chr2R - chr2R_9116372_9116507 chr2R_9116371_9116372;chr2R_9116507_9116508 chr2R_9115675_9116371;chr2R_9116508_9116737 0.00 0.00 10.53 0.00 NA 0.00 3.85 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 K jcn_only_AD Vha68-2 chr2L + chr2L_12974422_12975613 chr2L_12974444_12975613 chr2L_12975614_12975712;chr2L_12974385_12974421 100.00 99.33 100.00 99.07 100.00 99.54 99.71 99.48 100.00 100.00 99.55 99.43 99.36 99.38 99.23 99.65 100.00 99.57 100.00 99.74 100.00 100.00 100.00 100.00 100.00 99.59 100.00 100.00 100.00 100.00 99.77 100.00 100.00 99.73 100.00 100.00 100.00 99.44 99.10 99.67 98.44 99.75 100.00 100.00 100.00 100.00 100.00 99.13 99.80 98.80 100.00 100.00 100.00 100.00 100.00 99.22 100.00 100.00 K intron_retention betaTub97EF chr3R - chr3R_23794914_23795381 chr3R_23794913_23794914;chr3R_23795381_23795382 chr3R_23794649_23794913;chr3R_23795382_23795549 0.00 0.00 0.00 0.78 0.00 0.00 0.00 2.23 0.98 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 1.57 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 1.03 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 1.47 0.82 0.00 0.35 0.00 0.00 0.00 0.55 0.00 0.32 0.00 K jcn_only_AD ERp60,I_chr2R_7776895_7777652,I_chr2R_7776895_7778171,RI_chr2R_7790917_7791377 chr2R - chr2R_7776895_7778175 chr2R_7776895_7778171 chr2R_7776795_7776894;chr2R_7778176_7778271 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.10 0.00 0.04 0.07 0.00 0.04 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention g,I_chrX_13628772_13629563 chrX - chrX_13624678_13625581 chrX_13624677_13624678;chrX_13625581_13625582 chrX_13624529_13624677;chrX_13625582_13625655 2.46 4.65 4.65 0.00 0.00 0.00 9.52 5.19 5.71 0.00 0.00 2.41 4.55 0.00 8.16 0.00 0.00 0.00 6.25 5.06 0.00 0.00 2.78 0.00 0.00 2.17 5.45 10.53 2.50 5.00 6.12 12.50 6.45 6.17 0.00 4.44 0.00 3.45 0.00 4.12 5.00 3.85 0.00 0.00 0.00 2.99 0.00 0.00 5.00 5.26 0.00 0.00 NA 9.09 2.08 3.57 0.00 1.82 K jcn_only_AA CG11790,CG11791 chr3R + chr3R_20875669_20876344;chr3R_20875669_20876902 chr3R_20875669_20876354 chr3R_20875600_20875668;chr3R_20876903_20877278 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 4.35 NA NA 6.67 NA 8.33 NA NA 0.00 NA NA NA 0.00 3.70 K alternative_acceptor CG1815,I_chr3R_27501104_27501167,I_chr3R_27501104_27501176 chr3R + chr3R_27501104_27501179;chr3R_27501104_27501167 chr3R_27501104_27501176 chr3R_27501004_27501103;chr3R_27501180_27501267 40.62 30.00 45.95 32.20 21.43 33.33 46.00 39.66 38.24 46.34 51.52 53.12 30.00 48.39 46.51 40.43 24.24 32.14 31.43 35.14 31.58 48.15 47.92 20.41 40.62 48.48 31.25 16.67 49.06 48.08 48.00 45.24 44.57 39.13 29.55 47.37 37.29 46.88 46.81 50.60 43.18 41.77 40.00 47.50 46.55 40.58 21.05 53.10 38.24 47.73 30.43 38.24 39.13 50.00 39.22 40.74 40.62 45.83 K alternative_donor gpp,I_chr3R_2271795_2272181 chr3R + chr3R_2232800_2233199 chr3R_2232814_2233199 chr3R_2233200_2233496;chr3R_2232745_2232799 93.75 100.00 88.24 87.50 91.67 92.86 95.00 96.77 90.00 90.00 100.00 92.31 94.74 100.00 91.67 91.30 83.33 78.57 95.45 95.45 NA 94.12 95.24 87.50 100.00 91.67 84.21 90.00 100.00 94.12 100.00 NA 90.91 96.30 92.86 95.24 91.67 NA 100.00 95.24 88.89 93.33 87.50 100.00 NA 100.00 NA 97.06 91.43 100.00 95.24 91.67 77.78 NA 95.45 NA NA 93.75 N jcn_only_AD CG7033 chrX + chrX_8984654_8986142 chrX_8986071_8986142 chrX_8986143_8986859;chrX_8984521_8984653 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.13 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.98 100.00 100.00 100.00 100.00 100.00 98.82 100.00 K cassette Dscam,I_chr2R_3212243_3212342,F_chr2R_3219886_3228832,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3208270_3210064 chr2R_3208270_3209087;chr2R_3209152_3210064 chr2R_3209088_3209151 chr2R_3207156_3208269;chr2R_3210065_3210223 85.71 100.00 87.50 95.24 88.89 85.71 41.67 86.67 84.21 NA 40.00 88.89 55.56 85.71 100.00 87.50 100.00 88.89 77.78 88.89 85.71 63.64 77.78 66.67 NA 75.00 85.71 NA 60.00 NA 88.89 NA 75.00 91.67 NA NA 83.33 NA 71.43 90.00 NA 95.00 83.33 80.00 NA 85.71 88.89 NA 89.47 81.82 81.82 85.71 NA NA 93.33 87.50 72.73 NA K intron_retention CG31012,I_chr3R_26643930_26646602 chr3R + chr3R_26643032_26643355 chr3R_26643031_26643032;chr3R_26643355_26643356 chr3R_26642920_26643031;chr3R_26643356_26643512 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.80 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 1.03 1.94 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive Atpalpha,I_chr3R_16783890_16785070,I_chr3R_16788018_16789830,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16774552_16787936,chr3R_16788018_16789446 chr3R_16774552_16786447,chr3R_16786548_16789446 chr3R_16787937_16788017 chr3R_16786448_16786547 chr3R_16774539_16774551;chr3R_16789447_16789578 5.56 0.00 2.27 4.05 2.33 11.76 5.26 6.41 2.97 2.86 79.55 4.17 6.67 2.44 3.85 5.88 4.65 8.11 8.16 5.17 27.78 2.99 11.76 8.00 9.09 3.45 9.09 0.00 10.71 4.00 6.52 5.00 4.49 6.76 6.25 5.56 0.00 9.09 0.00 4.23 0.00 5.56 5.41 6.52 5.66 7.55 0.00 7.89 6.32 0.00 14.29 0.00 6.90 NA 3.08 12.50 10.00 16.44 K intron_retention CtBP chr3R + chr3R_8842516_8845063 chr3R_8842515_8842516;chr3R_8845063_8845064 chr3R_8842464_8842515;chr3R_8845064_8845536 95.00 90.91 90.91 95.65 70.00 100.00 96.97 94.74 88.00 NA NA 96.67 92.31 100.00 88.24 95.45 100.00 NA 94.44 95.00 90.00 100.00 88.89 100.00 NA 100.00 100.00 100.00 94.12 NA 91.67 NA 100.00 88.89 NA 100.00 100.00 NA 100.00 100.00 NA 96.30 91.67 NA NA NA NA 76.92 96.00 NA 90.00 NA NA NA 90.91 NA 77.78 90.00 K jcn_only_AD cenB1A chr3R + chr3R_18949110_18949164 chr3R_18949114_18949164 chr3R_18949165_18949936;chr3R_18947955_18949109 0.00 0.52 0.56 1.10 0.00 0.86 0.00 0.00 0.66 0.82 0.00 0.00 1.61 0.80 1.72 0.00 0.00 0.00 0.00 0.52 1.32 0.34 0.00 0.50 0.66 0.00 1.07 0.00 0.00 0.00 1.05 0.00 0.92 0.00 0.00 0.71 0.35 0.00 2.03 0.32 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.35 0.39 1.41 0.00 0.00 0.54 0.00 0.35 1.04 K intron_retention l(1)G0320 chrX - chrX_9446817_9447484 chrX_9446816_9446817;chrX_9447484_9447485 chrX_9445171_9446816;chrX_9447485_9447817 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24348983_24351592 chr3R_24348983_24349755;chr3R_24349940_24349995;chr3R_24351030_24351592 chr3R_24349756_24349939;chr3R_24349996_24351029 chr3R_24348417_24348982;chr3R_24351593_24351772 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 80.00 83.33 100.00 93.33 100.00 100.00 100.00 100.00 85.71 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention unc-13,I_chr4_904268_919018,I_chr4_906518_906708,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_906518_919018 chr4_906517_906518;chr4_919018_919019 chr4_906418_906517;chr4_919019_919102 0.00 0.00 0.00 4.65 0.00 0.00 0.00 1.92 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 3.39 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 NA 0.00 0.00 3.45 1.64 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention iPLA2-VIA chr3L - chr3L_9854038_9854099 chr3L_9854037_9854038;chr3L_9854099_9854100 chr3L_9853351_9854037;chr3L_9854100_9854435 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD Nrx-IV chr3L + chr3L_12142009_12147050 chr3L_12146849_12147050 chr3L_12147051_12147254 100.00 100.00 100.00 93.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor MB8.chr3R.pasa.66,CG1105,I_chr3R_2892020_2892122,RI_chr3R_2892020_2892252,I_chr3R_2892305_2892645 chr3R - chr3R_2892020_2892122;chr3R_2892020_2892645 chr3R_2892020_2892252 chr3R_2891920_2892019;chr3R_2892646_2892745 2.22 0.00 0.00 0.00 0.00 2.94 2.04 3.33 2.99 0.00 0.00 3.64 3.45 3.12 2.22 2.63 3.85 0.00 3.57 1.85 4.35 2.27 1.89 2.08 3.70 0.00 2.70 0.00 2.86 0.00 5.00 0.00 0.00 3.33 3.03 5.41 0.00 2.33 0.00 3.70 3.03 1.43 3.85 0.00 0.00 2.22 2.08 2.86 1.56 3.12 1.67 7.14 0.00 0.00 2.33 5.56 0.00 2.33 K multi_cassette RI_chrX_11473566_11473702,roX2,noncoding_23149,I_chrX_11475074_11475402 chrX + chrX_11473158_11473702 chrX_11473158_11473247;chrX_11473270_11473384;chrX_11473433_11473544;chrX_11473562_11473702 chrX_11473248_11473269;chrX_11473385_11473432;chrX_11473545_11473561 chrX_11473148_11473157;chrX_11473703_11473726 12.90 NA NA 10.53 NA NA NA 16.67 19.05 10.00 NA 16.67 NA 10.00 7.14 10.00 NA NA 11.76 13.51 NA NA NA NA NA 33.33 NA NA NA NA 10.00 NA NA 14.81 NA NA NA NA NA 10.34 NA 22.22 14.29 NA NA 23.08 20.00 6.67 12.90 NA NA NA NA NA 10.53 NA 22.22 11.11 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389272_2395659 chrX_2389272_2389644;chrX_2389762_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2393243;chrX_2393712_2395659 chrX_2389645_2389761;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664;chrX_2393244_2393711 chrX_2389172_2389271;chrX_2395660_2395759 20.00 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette Ac3,I_chr2L_21635211_21637957,I_chr2L_21643253_21646594 chr2L + chr2L_21635211_21637658 chr2L_21635211_21635619;chr2L_21635732_21637658 chr2L_21635620_21635731 chr2L_21635129_21635210;chr2L_21637659_21637786 26.97 NA NA 38.46 NA NA 30.00 26.67 15.79 NA NA 22.73 40.00 NA 30.00 33.33 NA NA 27.27 37.50 NA NA NA NA NA NA NA NA NA NA 13.51 NA NA 26.67 NA 7.69 NA NA NA 10.53 NA 50.00 NA NA NA NA NA NA 24.14 NA 33.33 27.27 NA NA 25.00 18.18 NA NA K alternative_acceptor Ranbp16,I_chrX_15826485_15826554,I_chrX_15826655_15827277 chrX - chrX_15826485_15826554 chrX_15826495_15826554 chrX_15826555_15826588;chrX_15826385_15826484 100.00 92.31 100.00 96.55 100.00 100.00 97.14 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 95.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 NA 92.86 100.00 96.30 NA 95.65 97.78 100.00 100.00 100.00 100.00 93.33 94.74 100.00 96.88 92.31 100.00 NA NA NA 90.91 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 K jcn_only_AA CG4238 chr2L + chr2L_2029029_2029103 chr2L_2029029_2029091 chr2L_2028321_2029028;chr2L_2029104_2029418 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 K intron_retention rictor chrX - chrX_19148565_19148635 chrX_19148564_19148565;chrX_19148635_19148636 chrX_19147835_19148564;chrX_19148636_19149554 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 5.88 NA 0.00 NA 6.06 0.00 0.00 0.00 0.00 2.27 0.00 10.34 0.00 0.00 0.00 10.34 2.78 0.00 0.00 2.94 0.00 6.90 7.32 NA 0.00 NA 3.23 0.00 8.33 0.00 9.09 0.00 6.06 0.00 0.00 NA 0.00 0.00 0.00 4.76 0.00 K intron_retention Snx6,RI_chr2L_8218680_8218853,I_chr2L_8230332_8238998 chr2L - chr2L_8218872_8219115 chr2L_8218871_8218872;chr2L_8219115_8219116 chr2L_8218854_8218871;chr2L_8219116_8219215 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 96.30 100.00 100.00 100.00 100.00 100.00 100.00 98.68 100.00 94.44 97.06 95.56 100.00 100.00 100.00 NA 97.50 100.00 100.00 98.39 100.00 100.00 100.00 100.00 97.62 100.00 98.00 100.00 98.21 98.46 100.00 95.65 98.21 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 K jcn_only_AA SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_16982134_16983336;chr3R_16982134_16982890;chr3R_16982134_16983218;chr3R_16982134_16983159 chr3R_16982134_16983164 chr3R_16982126_16982133;chr3R_16983337_16983376 12.50 NA 19.35 11.43 NA NA 8.82 15.38 10.00 NA NA 13.64 12.12 15.15 9.09 2.70 NA 14.29 13.33 12.50 NA NA NA NA NA NA NA NA NA NA 6.45 NA NA 14.29 NA NA NA NA NA NA NA 16.98 NA NA NA NA NA NA 10.91 NA NA NA NA NA 15.22 NA NA 0.00 K intron_retention park,RI_chr3L_21188731_21188785 chr3L - chr3L_21188231_21188285 chr3L_21188230_21188231;chr3L_21188285_21188286 chr3L_21188134_21188230;chr3L_21188286_21188730 0.00 0.00 NA 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 6.67 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.39 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL24,I_chr2L_13394941_13395015 chr2L - chr2L_13394941_13395015 chr2L_13394940_13394941;chr2L_13395015_13395016 chr2L_13394865_13394940;chr2L_13395016_13395065 89.44 NA NA NA NA NA 100.00 NA 88.89 NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA 90.00 NA NA NA 57.14 NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5955369_5960540 chr3R_5955369_5958936 chr3R_5955217_5955368 99.13 100.00 98.75 99.25 100.00 100.00 96.46 99.28 99.49 93.48 100.00 99.32 100.00 100.00 98.61 100.00 100.00 100.00 100.00 100.00 98.61 98.63 99.40 99.07 98.75 98.80 98.15 96.88 98.51 98.99 98.70 100.00 100.00 99.13 97.67 100.00 100.00 100.00 98.89 98.15 100.00 98.77 97.73 100.00 97.50 98.61 98.70 99.02 100.00 97.06 100.00 100.00 100.00 96.88 98.68 98.41 96.97 100.00 K mutually_exclusive Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824086_11825619,chr2R_11825773_11825951 chr2R_11824086_11825183,chr2R_11825385_11825951 chr2R_11825620_11825772 chr2R_11825184_11825384 chr2R_11823989_11824085;chr2R_11825952_11826483 98.08 99.07 100.00 79.59 100.00 100.00 91.38 96.75 97.24 85.37 94.55 97.08 82.61 96.30 97.18 97.10 97.78 100.00 98.41 97.62 100.00 100.00 98.39 98.25 96.15 98.11 99.06 85.71 98.57 96.55 98.08 98.73 96.06 96.26 100.00 100.00 99.42 99.10 98.29 95.92 97.96 98.28 95.92 98.41 95.28 98.78 100.00 96.63 98.70 97.66 97.87 95.45 98.92 97.67 96.92 100.00 98.44 99.28 K intron_retention CG30349,lin chr2R + chr2R_4798090_4798148 chr2R_4798089_4798090;chr2R_4798148_4798149 chr2R_4797992_4798089;chr2R_4798149_4798399 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.17 0.65 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.42 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.52 0.40 0.00 0.34 0.00 0.22 0.00 0.00 0.00 0.32 0.00 K jcn_only_AA Imp,I_chrX_10699490_10700695,RI_chrX_10699665_10700501,RI_chrX_10699665_10700695 chrX - chrX_10699547_10700501;chrX_10699503_10700501 chrX_10699665_10700501 chrX_10700502_10700547;chrX_10699299_10699502 33.93 NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG2658 chrX - chrX_2591822_2591881 chrX_2591821_2591822;chrX_2591881_2591882 chrX_2591372_2591821;chrX_2591882_2592219 1.32 0.00 0.00 5.56 0.00 0.00 1.69 0.00 4.23 2.44 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28.24 3.76 2.26 4.60 0.00 2.47 1.65 11.96 7.50 3.23 4.26 5.68 0.00 6.56 3.85 3.52 2.56 2.94 0.88 5.63 1.03 0.00 1.27 1.32 2.99 4.55 5.95 0.00 6.25 4.00 0.00 0.00 0.00 0.00 4.29 0.00 0.00 K intron_retention Asx chr2R + chr2R_10397666_10397727 chr2R_10397665_10397666;chr2R_10397727_10397728 chr2R_10397345_10397665;chr2R_10397728_10397968 0.00 2.13 0.00 1.32 0.00 0.00 0.00 0.00 1.05 2.56 0.00 0.00 0.00 2.63 3.33 0.00 0.00 0.00 3.92 0.00 0.00 0.73 0.00 0.00 0.00 0.00 3.92 3.45 0.00 0.00 0.00 3.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 0.00 0.00 0.00 2.90 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_243585_244182;chr4_243673_244182;chr4_243639_244182 chr4_243657_244182 chr4_244183_244282;chr4_243557_243584 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 NA 0.00 3.95 0.00 0.00 0.00 1.18 3.23 0.00 2.13 1.27 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 6.67 0.00 1.41 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 2.50 5.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10353,I_chrX_11775936_11778830,I_chrX_11778617_11778830,RI_chrX_11780885_11780988 chrX - chrX_11775936_11777220 chrX_11775935_11775936;chrX_11777220_11777221 chrX_11775836_11775935;chrX_11777221_11777654 56.10 66.67 46.88 42.50 59.38 56.67 58.33 68.97 71.01 90.91 76.47 68.18 76.47 70.00 39.02 55.26 61.54 65.52 50.00 49.15 66.67 77.14 50.00 50.00 40.00 47.06 56.52 35.71 32.00 52.00 56.10 57.14 62.22 48.89 47.06 41.18 51.61 62.50 50.00 65.91 45.45 55.77 55.17 51.85 57.14 54.84 71.43 57.69 61.67 47.06 52.00 53.33 53.33 50.00 60.00 66.67 75.00 65.00 K alternative_acceptor Pk17E,I_chrX_18683130_18684538,I_chrX_18685493_18699326 chrX + chrX_18684343_18684544 chrX_18684343_18684538 chrX_18684218_18684342;chrX_18684545_18684638 92.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 K cassette CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_157794_158016 chr4_157794_157864;chr4_157959_158016 chr4_157865_157958 chr4_157699_157793;chr4_158017_158243 92.86 94.44 87.50 88.71 94.12 95.45 94.37 96.43 90.67 83.33 94.44 98.15 96.97 95.12 96.67 91.55 91.43 92.31 92.86 92.68 92.86 100.00 90.00 85.71 73.33 68.57 95.65 100.00 71.43 93.33 94.59 85.71 100.00 91.57 94.74 92.31 88.89 87.50 90.91 95.83 83.33 93.88 94.74 95.00 NA 88.89 100.00 88.89 95.95 100.00 95.00 92.86 NA NA 91.18 83.33 NA 100.00 K intron_retention BRWD3 chr3R + chr3R_20149344_20149400 chr3R_20149343_20149344;chr3R_20149400_20149401 chr3R_20148119_20149343;chr3R_20149401_20150125 92.31 95.45 96.00 97.50 94.74 100.00 96.30 87.50 90.00 92.31 88.24 90.74 95.24 100.00 80.00 91.67 94.74 94.74 89.66 92.16 78.95 96.30 88.89 86.67 95.65 100.00 90.91 79.31 97.22 97.06 90.91 95.65 96.30 93.62 100.00 96.77 97.30 91.30 88.37 89.09 93.10 92.00 100.00 87.50 74.07 88.89 84.00 92.59 97.78 88.46 89.19 94.12 90.00 91.67 90.00 90.48 92.31 94.29 K intron_retention C3G chrX - chrX_6676520_6676593 chrX_6676519_6676520;chrX_6676593_6676594 chrX_6675507_6676519;chrX_6676594_6676725 0.00 0.00 0.00 1.44 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette RI_chrX_11473566_11473702,roX2,noncoding_23149,I_chrX_11475074_11475402 chrX + chrX_11473158_11473702 chrX_11473158_11473247;chrX_11473270_11473381;chrX_11473433_11473485;chrX_11473562_11473702 chrX_11473248_11473269;chrX_11473382_11473432;chrX_11473486_11473561 chrX_11473148_11473157;chrX_11473703_11473726 18.18 22.22 11.11 10.53 NA NA NA 20.00 22.73 18.18 NA 16.67 42.86 18.18 13.33 12.90 33.33 NA 11.76 17.95 NA NA NA NA NA 33.33 33.33 NA NA NA 18.18 22.22 NA 14.81 NA NA NA NA 33.33 13.33 NA 22.22 14.29 33.33 NA 28.57 20.00 6.67 15.62 NA NA 33.33 NA NA 15.00 NA 30.00 11.11 K intron_retention Lip4 chr2L + chr2L_10530670_10530855 chr2L_10530669_10530670;chr2L_10530855_10530856 chr2L_10530314_10530669;chr2L_10530856_10531517 1.38 0.00 0.00 0.00 0.00 0.00 1.15 0.00 3.17 0.00 0.00 2.78 0.00 3.08 0.00 2.35 0.00 0.00 NA 1.80 0.00 3.46 0.91 1.90 2.90 2.27 0.00 2.35 5.71 0.00 0.00 5.41 6.19 3.45 4.82 4.41 1.83 1.09 0.00 2.42 6.60 2.33 0.00 3.03 0.00 4.72 0.00 4.59 3.70 0.00 2.73 0.00 2.48 0.00 0.00 0.00 1.61 4.22 K alternative_donor CG7702 chr3R + chr3R_14495273_14496859;chr3R_14495285_14496859 chr3R_14495421_14496859 chr3R_14496860_14497096;chr3R_14495114_14495272 72.73 NA 60.00 NA NA NA 80.00 NA NA NA NA 50.00 NA NA NA NA NA NA NA 72.73 NA NA 77.78 71.43 60.00 NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA 66.67 75.00 NA 85.71 NA 71.43 NA 50.00 77.78 NA 77.78 NA NA NA NA NA NA NA K intron_retention RanBPM chr2R + chr2R_6322096_6322156 chr2R_6322095_6322096;chr2R_6322156_6322157 chr2R_6321932_6322095;chr2R_6322157_6322290 0.00 6.45 0.00 4.65 0.00 8.70 4.76 0.00 7.32 NA 0.00 0.00 0.00 0.00 0.00 6.06 NA 6.67 0.00 3.45 0.00 7.69 2.70 7.14 9.09 8.70 15.62 0.00 30.00 0.00 2.94 0.00 0.00 0.00 0.00 5.00 3.45 0.00 0.00 14.29 NA 4.44 0.00 6.25 14.81 8.70 5.71 NA 8.16 0.00 0.00 0.00 6.90 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL13A,I_chr3R_1450243_1451235,EI_chr3R_1450853_1451054,snoRNA:Me28S-U2134b,snoRNA:Me28S-U2134a chr3R + chr3R_1450243_1450611 chr3R_1450242_1450243;chr3R_1450611_1450612 chr3R_1450148_1450242;chr3R_1450612_1450852 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.12 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.08 0.10 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.03 0.07 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 K cassette Pten,I_chr2L_10256507_10256803,F_chr2L_10259663_10260253 chr2L - chr2L_10256507_10257394 chr2L_10256507_10256909;chr2L_10257123_10257394 chr2L_10256910_10257122 chr2L_10256469_10256506;chr2L_10257395_10257716 77.78 66.67 87.50 35.71 100.00 87.50 58.82 77.78 80.00 80.00 83.33 66.67 72.73 66.67 60.00 85.71 100.00 75.00 64.71 80.95 83.33 NA 71.43 60.00 55.56 85.71 91.67 NA NA 75.00 83.33 77.78 NA 86.36 88.89 80.00 85.71 80.00 83.33 76.47 66.67 72.00 90.91 56.25 33.33 78.95 78.57 80.00 83.33 70.59 63.16 55.56 60.00 90.91 81.82 71.43 73.33 66.67 K alternative_acceptor UbcD2,noncoding_2473,CG6724 chr2L - chr2L_10766973_10767656 chr2L_10767013_10767656 chr2L_10767657_10767740;chr2L_10766908_10766972 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Xe7,RI_chr3R_1493064_1493414,CRI_chr3R_1493111_1493414 chr3R - chr3R_1493028_1493414 chr3R_1493111_1493414 chr3R_1493415_1493514;chr3R_1493011_1493027 10.98 19.44 7.41 31.58 0.00 NA 13.89 9.68 9.80 NA 4.76 6.25 NA NA NA 20.00 12.00 NA 9.38 10.20 NA 17.39 12.50 8.70 NA 3.70 6.67 NA 11.54 NA 17.24 20.00 34.29 3.23 NA 19.23 3.23 4.35 NA 10.42 13.79 11.76 13.04 18.18 8.70 14.71 15.62 28.89 4.55 7.69 16.67 NA 10.34 8.33 9.52 12.82 4.00 12.24 K jcn_only_AD I_chr2L_19388570_19389922,CG17544 chr2L - chr2L_19393657_19398334;chr2L_19393657_19398350 chr2L_19393657_19398346 chr2L_19393497_19393656;chr2L_19398351_19398401 23.56 21.82 24.66 18.92 14.52 21.81 25.81 28.61 23.31 21.83 20.42 24.78 23.56 27.76 19.55 30.08 19.66 26.92 20.44 25.73 29.44 18.47 23.05 23.69 23.53 19.43 16.54 23.00 15.66 24.40 25.71 21.01 21.18 21.98 24.91 17.13 23.87 28.03 26.42 21.01 22.88 27.26 23.98 27.65 28.42 21.61 27.81 21.66 26.22 24.22 23.17 26.95 19.88 21.78 23.57 25.00 31.84 29.62 K intron_retention I_chr3R_5338175_5338299,Rlc1 chr3R - chr3R_5341073_5341123 chr3R_5341072_5341073;chr3R_5341123_5341124 chr3R_5340795_5341072;chr3R_5341124_5341406 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.60 2.33 0.00 0.00 0.00 0.00 0.00 3.88 2.56 0.72 0.00 0.00 0.95 1.75 0.00 0.00 2.40 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.28 K intron_retention XRCC1 chrX + chrX_5226044_5226101 chrX_5226043_5226044;chrX_5226101_5226102 chrX_5225715_5226043;chrX_5226102_5226468 0.00 0.00 0.00 5.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 1.32 0.00 4.65 3.28 0.00 0.00 0.00 1.61 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 8.33 3.33 0.00 0.00 3.85 0.00 0.00 0.00 0.00 3.17 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 1.59 0.00 0.00 K intron_retention hppy,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15105700_15108248 chr2R_15105699_15105700;chr2R_15108248_15108249 chr2R_15105636_15105699;chr2R_15108249_15108287 11.36 NA NA 0.00 NA NA 47.37 NA 13.51 NA NA 12.20 NA 25.00 12.50 17.65 NA NA 6.25 6.25 NA 19.23 16.67 NA 10.53 8.33 6.25 NA NA NA 6.25 NA 0.00 13.33 NA NA 0.00 NA NA 7.41 NA 6.67 NA NA NA NA NA 13.33 8.33 NA NA 14.29 NA NA 15.79 NA NA NA K mutually_exclusive CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21275807_21279883,chr2L_21280448_21281131 chr2L_21275807_21277196,chr2L_21278430_21281131 chr2L_21279884_21280447 chr2L_21277197_21278429 chr2L_21275724_21275806;chr2L_21281132_21281337 71.43 71.43 50.00 50.00 50.00 75.00 66.67 66.67 72.73 75.00 50.00 62.50 66.67 80.00 40.00 60.00 80.00 66.67 80.00 62.50 50.00 71.43 72.73 63.64 83.33 50.00 62.50 62.50 60.00 75.00 57.14 66.67 77.78 66.67 75.00 85.71 75.00 71.43 66.67 73.33 75.00 50.00 80.00 62.50 66.67 77.78 71.43 85.71 63.64 83.33 72.73 83.33 75.00 83.33 71.43 75.00 85.71 83.33 K intron_retention CG3770,CG12851,F_chr2R_20839778_20839843 chr2R + chr2R_20833687_20833741 chr2R_20833686_20833687;chr2R_20833741_20833742 chr2R_20832496_20833686;chr2R_20833742_20833855 3.57 1.81 3.77 7.41 2.20 4.26 18.75 4.00 3.64 1.72 10.67 6.13 5.56 5.62 2.56 9.80 2.78 0.00 3.03 4.96 0.00 15.82 3.57 0.61 4.12 5.10 4.79 4.71 9.52 5.71 3.70 0.95 4.32 4.27 2.27 16.28 5.33 3.33 2.03 5.51 3.57 4.28 3.95 2.86 2.25 1.96 1.14 5.61 2.50 3.31 2.40 0.00 0.64 1.83 3.28 1.43 1.29 1.23 K alternative_donor CG15609,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12896448_12897557 chr2R_12896448_12897005 chr2R_12896351_12896447;chr2R_12897558_12897678 20.61 18.95 18.42 23.86 21.54 23.19 16.67 17.65 21.74 27.78 16.92 18.75 20.31 19.30 18.68 15.38 16.92 23.38 15.79 18.01 15.71 42.55 14.86 15.97 21.52 12.66 21.51 29.79 29.52 25.69 18.39 25.77 41.54 16.80 23.38 27.06 21.43 18.27 32.99 26.67 28.38 20.00 21.15 20.61 31.58 22.30 17.76 38.78 20.95 10.13 19.01 16.00 22.73 18.75 23.17 18.48 14.61 30.97 K intron_retention CG4572,FI_chr3R_15689914_15690042 chr3R - chr3R_15689914_15690046 chr3R_15689913_15689914;chr3R_15690046_15690047 chr3R_15689814_15689913;chr3R_15690047_15690114 20.44 18.00 18.75 28.57 16.95 17.74 14.96 20.44 12.69 29.17 11.29 23.64 8.57 19.67 18.75 30.00 14.67 15.69 21.11 15.44 16.88 26.67 21.25 12.90 23.53 32.35 36.49 42.86 59.46 15.00 22.86 22.22 35.48 15.04 24.14 47.06 15.38 9.09 13.24 20.63 54.17 15.07 22.22 17.14 7.69 26.32 23.64 30.77 19.59 17.19 32.56 13.89 37.14 26.32 19.15 23.91 18.18 39.02 K intron_retention Ulp1 chrX - chrX_19097520_19097598 chrX_19097519_19097520;chrX_19097598_19097599 chrX_19096134_19097519;chrX_19097599_19097800 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 1.15 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG5273 chrX + chrX_653719_653808 chrX_653719_653787 chrX_653471_653718;chrX_653809_654561 62.50 57.89 58.54 NA 48.28 NA 43.75 60.53 56.16 NA 40.00 68.42 NA 70.37 65.79 56.25 65.38 67.86 NA 58.62 45.00 80.00 62.50 63.41 NA NA NA NA 81.82 NA 57.14 NA NA 70.45 NA NA 71.67 67.65 63.08 59.57 NA 53.45 65.00 70.37 NA 56.67 NA NA 52.50 80.77 61.70 NA NA 41.94 62.50 81.25 70.00 NA K intron_retention l(3)02640,I_chr3L_1337063_1337270 chr3L + chr3L_1336017_1337270 chr3L_1336016_1336017;chr3L_1337270_1337271 chr3L_1335944_1336016;chr3L_1337271_1337370 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.45 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.81 0.00 0.00 0.00 0.86 0.00 0.00 1.70 1.82 0.87 0.00 0.00 0.00 0.00 0.00 0.00 1.63 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.75 0.60 0.00 0.00 0.00 K intron_retention meso18E,I_chrX_19601491_19601568 chrX - chrX_19601491_19601568 chrX_19601490_19601491;chrX_19601568_19601569 chrX_19601429_19601490;chrX_19601569_19601635 100.00 100.00 100.00 100.00 NA 90.91 100.00 91.67 94.44 88.89 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 94.74 100.00 90.91 100.00 100.00 94.44 100.00 100.00 96.43 94.12 100.00 95.00 95.83 96.43 93.33 NA 100.00 93.33 89.47 93.75 94.44 100.00 100.00 94.44 90.00 100.00 100.00 NA 92.31 92.86 93.75 K jcn_only_AD nes chr3L - chr3L_19253331_19253632;chr3L_19253331_19253636;chr3L_19253331_19253609;chr3L_19253331_19253676;chr3L_19253331_19253745;chr3L_19253331_19253764 chr3L_19253331_19253648 chr3L_19253215_19253330;chr3L_19253765_19253779 17.70 14.29 14.29 11.63 17.14 27.27 29.09 19.23 18.00 25.00 NA 14.00 17.39 23.53 19.05 16.67 NA 12.50 13.64 16.13 31.82 40.00 18.37 13.16 24.14 12.00 25.81 28.57 18.18 9.52 16.28 12.50 15.62 13.33 18.75 19.05 41.94 30.00 21.74 15.52 18.52 9.52 6.67 7.69 18.52 18.60 20.00 6.25 8.00 NA 21.05 20.59 11.11 9.52 17.19 29.17 45.00 6.45 K jcn_only_AD eIF4E-6,RI_chr3R_24852741_24852800,I_chr3R_24852751_24852800 chr3R - chr3R_24852751_24852809 chr3R_24852751_24852800 chr3R_24852651_24852750;chr3R_24852810_24852896 29.03 NA NA NA NA NA NA NA 29.03 NA NA NA NA NA NA NA NA NA NA 39.13 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 26.09 NA NA NA NA NA NA NA NA NA K intron_retention Rnp4F,I_chrX_5214525_5214591 chrX - chrX_5214538_5214591 chrX_5214537_5214538;chrX_5214591_5214592 chrX_5214315_5214537;chrX_5214592_5214691 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 2.08 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention caz,noncoding_24110,RI_chrX_16183147_16183258,RI_chrX_16183356_16185973 chrX + chrX_16182991_16183258 chrX_16182990_16182991;chrX_16183258_16183259 chrX_16182887_16182990;chrX_16183259_16183355 7.69 NA NA NA NA NA NA NA 14.29 6.67 NA 7.41 NA NA NA NA NA NA NA 18.75 NA 8.33 4.65 10.71 10.53 NA 35.71 41.67 0.00 0.00 0.00 0.00 NA NA 7.14 13.04 4.35 6.25 6.67 11.76 NA 17.65 NA NA NA 15.00 NA 13.33 0.00 0.00 10.71 NA NA NA NA 7.69 6.67 9.09 K alternative_acceptor CaMKII,I_chr4_1058049_1058127,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1058196_1058271 chr4_1058217_1058271 chr4_1058272_1058285;chr4_1058160_1058195 94.44 96.15 100.00 95.16 100.00 95.83 94.00 93.22 92.98 87.50 93.75 95.35 100.00 100.00 96.00 94.23 96.00 95.24 94.44 97.44 88.89 76.92 95.45 96.00 100.00 95.00 95.00 100.00 92.86 94.44 97.44 83.33 88.89 92.16 100.00 75.00 93.75 93.33 100.00 95.65 93.75 93.75 95.45 97.22 92.86 87.10 91.30 91.30 94.74 96.00 100.00 94.44 88.89 94.44 97.14 88.00 91.43 91.49 K cassette Cct1,Cct2 chr3L + chr3L_1546307_1550713 chr3L_1546307_1546598;chr3L_1546677_1550713 chr3L_1546599_1546676 chr3L_1546118_1546306;chr3L_1550714_1551288 11.93 14.09 10.61 9.09 12.40 12.12 4.82 8.36 11.31 24.19 11.76 12.88 15.38 9.70 11.30 9.36 13.53 19.05 12.23 19.63 11.41 10.73 15.72 18.13 10.00 8.52 11.88 6.94 12.31 13.85 11.50 13.73 12.15 10.74 11.35 7.64 18.62 17.60 19.54 13.04 7.10 10.37 10.08 11.32 22.46 14.69 11.66 11.05 10.00 15.05 11.43 19.82 11.94 11.93 12.11 15.54 12.68 8.74 K alternative_acceptor CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3018025_3018278;chr2L_3018082_3018278 chr2L_3018018_3018278 chr2L_3018279_3018287;chr2L_3017982_3018017 0.00 5.88 0.00 0.00 NA 0.00 0.00 NA 1.54 0.00 8.33 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 5.88 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 2.94 0.00 11.11 0.00 NA NA 8.33 NA 14.29 0.00 NA 0.00 0.00 0.00 NA 5.56 NA 0.00 0.00 0.00 0.00 9.09 NA NA NA NA 7.14 0.00 K jcn_only_AD Mms19,I_chr3R_1059416_1059514 chr3R + chr3R_1059416_1059514 chr3R_1059457_1059514 chr3R_1059515_1059614;chr3R_1059316_1059415 100.00 100.00 100.00 100.00 96.55 97.06 100.00 100.00 98.82 NA 100.00 100.00 96.88 100.00 98.15 98.11 100.00 100.00 100.00 98.70 100.00 100.00 100.00 98.46 97.37 100.00 97.87 96.00 97.78 100.00 93.62 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 96.83 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 98.67 96.55 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 K alternative_donor eIF5,I_chrX_15882955_15883078,RI_chrX_15883163_15883424,I_chrX_15883297_15883424,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15883143_15883470 chrX_15883143_15883424 chrX_15883079_15883142;chrX_15883471_15883504 100.00 NA NA 100.00 NA 87.50 100.00 100.00 90.00 NA NA 100.00 NA NA NA 93.33 NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 91.67 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 94.44 NA NA NA NA NA NA NA NA 91.67 K intron_retention R_chr2R_4502755_4503407,Vps25 chr2R + chr2R_4513081_4513132 chr2R_4513080_4513081;chr2R_4513132_4513133 chr2R_4512956_4513080;chr2R_4513133_4513793 12.12 0.00 12.24 14.04 17.24 8.33 11.32 14.29 6.35 7.69 20.00 14.29 0.00 14.29 14.58 13.11 15.00 21.05 17.65 13.33 0.00 8.57 10.64 8.62 32.00 29.63 18.00 25.93 34.38 16.67 14.58 9.80 12.50 9.62 10.81 35.00 9.80 12.12 8.47 12.07 25.93 10.71 6.45 12.20 11.76 8.47 10.42 15.79 14.93 11.11 14.04 9.76 9.68 10.87 9.09 6.06 8.33 14.29 K alternative_acceptor CG30372,coilin,I_chr2R_4012973_4013037,RI_chr2R_4012976_4013037 chr2R - chr2R_4012976_4013037;chr2R_4012973_4013037 chr2R_4012979_4013037 chr2R_4013038_4013137;chr2R_4012876_4012972 75.00 66.67 63.64 90.00 80.00 66.67 81.82 85.71 82.35 NA 80.00 64.29 66.67 NA 66.67 75.00 66.67 83.33 83.33 75.00 85.71 NA 72.73 100.00 66.67 71.43 77.78 NA 57.14 83.33 75.00 NA 88.89 81.82 80.00 NA 71.43 NA NA 60.00 100.00 72.22 NA 60.00 71.43 81.82 50.00 NA 90.00 71.43 60.00 83.33 NA NA 85.71 75.00 55.56 87.50 K intron_retention CG30349,lin chr2R + chr2R_4796711_4796766 chr2R_4796710_4796711;chr2R_4796766_4796767 chr2R_4796582_4796710;chr2R_4796767_4796916 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG10959,I_chrX_8043524_8043577,I_chrX_8043625_8043682 chrX + chrX_8043510_8043577 chrX_8043524_8043577 chrX_8043578_8043624;chrX_8043424_8043509 0.00 NA NA 0.00 NA NA NA NA 5.26 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA 5.88 0.00 NA 5.26 NA NA NA NA NA NA NA NA NA 0.00 K cassette msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2579521_2586402 chr3L_2579521_2585604;chr3L_2585739_2586402 chr3L_2585605_2585738 chr3L_2579455_2579520;chr3L_2586403_2586502 98.22 97.19 98.71 96.33 98.90 98.48 98.85 97.07 98.74 97.67 99.50 98.16 98.60 98.28 97.22 98.39 98.95 96.50 97.01 96.71 98.22 94.94 97.64 98.99 99.41 99.50 98.67 95.35 96.24 98.81 96.14 100.00 95.45 98.89 98.17 99.36 98.86 98.96 97.67 98.52 91.03 97.22 97.80 100.00 98.72 96.15 97.96 98.22 97.09 98.61 96.90 99.36 100.00 96.67 96.65 98.97 100.00 97.40 K intron_retention chic,noncoding_1263,RI_chr2L_5973675_5973760,RI_chr2L_5973675_5973798,I_chr2L_5973675_5973823,RI_chr2L_5979705_5980734 chr2L - chr2L_5973675_5976610 chr2L_5973674_5973675;chr2L_5976610_5976611 chr2L_5973575_5973674;chr2L_5976611_5976782 0.00 0.04 0.00 0.00 0.06 0.00 0.12 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.09 0.13 0.00 0.00 0.00 0.00 0.00 0.05 0.03 0.00 0.00 0.00 0.11 0.48 0.24 0.00 0.00 0.00 0.04 0.08 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.03 0.00 0.04 0.00 0.00 0.00 0.05 0.00 0.00 0.01 K intron_retention CG8839,I_chr2R_8229288_8229488,I_chr2R_8229288_8231538 chr2R - chr2R_8229288_8231964 chr2R_8229287_8229288;chr2R_8231964_8231965 chr2R_8229188_8229287;chr2R_8231965_8232118 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.67 9.09 0.00 7.69 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 NA 0.00 9.09 NA 0.00 5.56 0.00 4.44 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.00 0.00 4.88 3.33 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 1.59 K intron_retention CG5522 chr2R + chr2R_12671388_12675659 chr2R_12671387_12671388;chr2R_12675659_12675660 chr2R_12671319_12671387;chr2R_12675660_12675765 2.50 2.50 4.76 3.81 0.00 7.55 6.96 2.31 3.05 0.00 2.99 4.59 4.17 8.11 2.41 3.30 0.00 10.87 6.67 3.03 0.00 2.22 1.72 1.65 4.62 4.17 9.68 7.41 7.27 1.20 3.45 0.00 0.00 5.31 0.00 0.00 1.45 0.00 2.50 3.42 2.94 1.21 3.39 2.22 0.00 0.00 0.00 0.00 3.47 3.10 0.00 0.00 0.00 14.29 4.94 0.00 0.00 0.00 K intron_retention TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748981_19749899 chr2R_19748980_19748981;chr2R_19749899_19749900 chr2R_19748884_19748980;chr2R_19749900_19749968 98.04 100.00 100.00 98.00 94.12 95.45 97.92 100.00 100.00 92.86 100.00 98.04 100.00 96.30 96.88 95.83 96.67 96.97 97.37 98.36 100.00 96.00 97.37 96.97 93.10 100.00 96.97 100.00 95.65 96.55 100.00 100.00 97.83 100.00 100.00 100.00 100.00 95.45 96.67 98.18 97.62 98.33 100.00 96.97 100.00 96.97 93.75 100.00 98.28 96.00 100.00 94.74 100.00 100.00 97.78 100.00 100.00 100.00 K alternative_donor trbd chr3R - chr3R_5535271_5536202;chr3R_5535271_5536695 chr3R_5535271_5535611 chr3R_5535110_5535270;chr3R_5536696_5536730 20.69 17.39 25.93 34.21 18.75 20.83 21.21 17.95 18.97 23.08 44.44 26.19 15.00 16.67 17.39 20.59 16.67 42.31 19.23 18.37 28.57 55.56 20.59 21.74 22.22 13.64 19.23 18.18 29.63 34.78 21.74 20.00 23.68 21.62 21.05 14.29 22.73 25.00 21.74 22.86 17.39 24.44 16.67 13.64 18.75 12.50 21.05 28.12 21.05 20.00 20.69 17.39 16.67 16.67 23.08 15.38 22.22 14.29 K alternative_acceptor CG17683,I_chr2R_18774_18869 chr2R + chr2R_18774_18826;chr2R_18774_18851 chr2R_18774_18869 chr2R_18768_18773;chr2R_18870_18969 0.00 0.00 8.33 5.00 0.00 0.00 0.00 4.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 9.09 9.09 0.00 0.00 8.33 0.00 NA 0.00 10.00 5.26 0.00 10.00 5.88 9.09 9.09 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 14.29 9.09 8.33 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 0.00 9.09 7.69 K intron_retention CG15100 chr2R - chr2R_14736551_14736606 chr2R_14736550_14736551;chr2R_14736606_14736607 chr2R_14735399_14736550;chr2R_14736607_14736711 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 3.88 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Taf1 chr3R + chr3R_2479844_2480191 chr3R_2479843_2479844;chr3R_2480191_2480192 chr3R_2479787_2479843;chr3R_2480192_2480386 11.76 NA NA NA NA NA NA 25.00 23.53 NA NA 15.00 NA NA NA NA NA NA NA 0.00 NA NA 23.53 11.76 NA NA NA NA NA NA NA 9.52 3.70 38.46 NA NA 6.25 NA 5.88 9.09 NA 11.76 NA 9.52 8.70 0.00 13.33 8.33 12.50 13.33 NA NA NA NA NA 12.50 7.14 26.32 K jcn_only_AD heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27805342_27811232;chr3R_27805342_27810955 chr3R_27805342_27811214 chr3R_27805247_27805341;chr3R_27811233_27811433 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 8.00 0.00 2.33 NA 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 1.69 0.00 NA NA 1.75 0.00 0.00 0.00 K intron_retention CG1024 chr3R - chr3R_2203621_2203685 chr3R_2203620_2203621;chr3R_2203685_2203686 chr3R_2203552_2203620;chr3R_2203686_2203901 94.09 92.86 NA NA NA NA 90.91 100.00 94.44 NA 88.89 100.00 100.00 NA 87.50 94.44 88.89 NA 88.89 100.00 100.00 NA 93.75 93.33 100.00 NA 81.82 100.00 87.50 92.86 100.00 90.00 90.91 100.00 NA NA 92.86 NA 90.91 94.74 NA 92.86 NA 94.44 NA 93.75 100.00 100.00 100.00 93.75 90.00 81.82 100.00 92.31 100.00 100.00 95.24 100.00 K alternative_donor Myo61F,mtacp1,I_chr3L_1330291_1330865,I_chr3L_1330291_1331279,RI_chr3L_1330929_1331041,l(3)02640 chr3L + chr3L_1330929_1331041 chr3L_1330950_1331041 chr3L_1331042_1331054;chr3L_1330866_1330928 99.24 99.08 97.67 97.39 98.90 100.00 98.60 99.22 100.00 98.73 100.00 99.38 100.00 100.00 97.03 100.00 100.00 98.72 100.00 99.51 98.31 97.44 99.06 98.32 100.00 98.73 99.12 97.53 100.00 100.00 100.00 98.80 100.00 100.00 100.00 100.00 99.34 98.99 98.59 99.37 98.85 100.00 98.11 100.00 99.24 99.26 97.96 100.00 99.25 98.91 99.01 100.00 98.36 98.78 98.92 100.00 98.95 100.00 K intron_retention CG18473 chr3R + chr3R_5190257_5190313 chr3R_5190256_5190257;chr3R_5190313_5190314 chr3R_5190039_5190256;chr3R_5190314_5190593 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Exp6,I_chrX_369347_369797 chrX - chrX_365679_365781 chrX_365678_365679;chrX_365781_365782 chrX_365610_365678;chrX_365782_365944 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 92.86 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 92.31 91.67 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor RpL28,RI_chr3L_3221710_3221877,I_chr3L_3221982_3222744,snoRNA:Or-CD11c chr3L - chr3L_3221982_3222787;chr3L_3221982_3222574;chr3L_3221982_3222926;chr3L_3221982_3222365;chr3L_3221982_3222847 chr3L_3221982_3222152 chr3L_3221882_3221981;chr3L_3222927_3222958 0.29 0.00 0.00 0.19 0.00 0.44 0.68 0.11 0.98 1.10 0.58 1.58 0.00 0.00 0.20 0.00 0.00 0.00 0.22 0.43 0.00 0.34 1.47 0.00 5.26 0.56 7.14 11.59 0.85 0.00 0.00 0.00 0.00 0.26 0.00 0.00 4.08 2.44 2.08 0.90 0.00 0.14 0.00 2.56 0.00 1.03 4.00 0.00 0.34 0.00 4.76 4.55 0.29 5.26 0.43 2.86 3.53 0.10 K intron_retention CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907848_9908424 chr2L_9907847_9907848;chr2L_9908424_9908425 chr2L_9907756_9907847;chr2L_9908425_9908505 68.75 60.00 83.33 62.50 NA NA 66.67 69.23 66.67 NA 66.67 68.97 75.00 73.33 69.23 90.00 63.64 NA 75.00 58.33 45.45 72.00 78.95 73.33 64.29 NA 66.67 66.67 76.92 82.76 60.00 77.78 68.00 66.67 75.00 76.47 58.82 50.00 63.16 76.19 NA 73.08 90.91 64.29 54.55 88.89 63.64 73.33 76.92 60.00 62.50 50.00 NA NA 68.75 71.43 47.37 90.00 K intron_retention CG7816,RI_chr3R_25691122_25694436 chr3R - chr3R_25690719_25690778 chr3R_25690718_25690719;chr3R_25690778_25690779 chr3R_25690611_25690718;chr3R_25690779_25691121 0.00 0.00 0.88 0.00 0.00 0.00 0.00 1.01 1.63 1.23 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 2.34 0.00 0.00 0.00 1.19 5.43 3.92 0.00 0.00 0.00 0.00 1.67 1.26 0.00 0.00 0.00 0.00 1.61 0.00 1.64 0.00 0.00 0.00 0.00 3.88 1.54 2.70 1.25 1.41 2.06 0.00 1.72 0.00 0.00 0.00 1.15 2.15 K intron_retention cora,I_chr2R_15129291_15129988 chr2R + chr2R_15130685_15130759 chr2R_15130684_15130685;chr2R_15130759_15130760 chr2R_15130574_15130684;chr2R_15130760_15131114 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.61 0.00 0.00 0.77 0.00 0.89 0.88 0.65 0.00 0.00 0.00 1.03 0.00 0.00 1.22 0.00 0.00 0.00 0.80 0.88 0.00 0.00 0.00 0.00 0.00 0.25 1.07 0.00 0.00 0.00 0.98 0.00 0.35 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.67 0.00 0.00 0.00 0.00 0.38 0.00 0.00 K alternative_donor Ssdp,RI_chr3R_14022843_14025255 chr3R - chr3R_14022843_14024928 chr3R_14022843_14024423 chr3R_14022743_14022842;chr3R_14024929_14025096 42.86 41.18 47.06 50.00 62.50 33.33 66.67 44.44 43.40 35.71 63.64 37.50 66.67 38.89 46.67 51.85 53.33 50.00 40.00 25.00 50.00 47.83 48.15 47.37 60.00 53.33 69.23 60.00 25.00 31.82 53.33 20.00 13.89 44.12 44.44 45.45 40.91 38.89 44.44 36.36 25.00 42.86 47.06 35.00 20.00 25.00 35.71 29.73 42.50 36.36 36.84 36.84 36.36 60.00 55.56 28.57 42.86 23.81 K jcn_only_AA mr,I_chr2R_19861985_19862040 chr2R + chr2R_19861985_19862040 chr2R_19861985_19862035 chr2R_19861885_19861984;chr2R_19862041_19862140 100.00 100.00 100.00 95.45 100.00 100.00 98.04 98.67 96.77 NA 100.00 100.00 97.87 96.43 100.00 98.25 100.00 100.00 100.00 98.80 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA NA 93.62 100.00 100.00 100.00 100.00 96.88 100.00 97.22 93.55 100.00 95.45 98.59 96.43 96.15 100.00 100.00 96.97 100.00 98.61 96.97 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG3860,I_chr2R_19880382_19880479,I_chr2R_19880577_19880631,RI_chr2R_19882285_19882350 chr2R - chr2R_19880577_19880637 chr2R_19880577_19880631 chr2R_19880480_19880576;chr2R_19880638_19880731 0.00 5.00 0.00 0.00 6.25 NA 0.00 3.85 2.86 NA NA 3.23 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 7.14 0.00 0.00 6.67 6.67 4.17 0.00 0.00 0.00 4.35 NA NA 3.12 NA 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 NA 3.45 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 K intron_retention M(2)21AB,I_chr2L_107839_110405,I_chr2L_107957_108587,I_chr2L_110878_111037,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_108227_108587 chr2L_108226_108227;chr2L_108587_108588 chr2L_108145_108226;chr2L_108588_108687 6.50 5.83 3.88 9.44 3.73 6.80 8.02 9.94 4.80 10.85 8.18 4.46 3.92 7.07 6.92 7.28 5.15 3.62 6.50 8.05 7.77 5.25 5.36 5.35 11.59 9.00 10.80 7.83 14.29 9.30 8.11 10.29 12.05 5.91 6.40 15.15 3.34 5.21 5.92 12.23 20.69 4.49 5.26 2.31 7.59 7.07 5.13 13.33 7.17 5.63 4.62 5.15 5.68 5.21 4.11 4.55 4.46 10.53 K cassette CaMKI,I_chr4_467862_471815,I_chr4_471136_473243,I_chr4_472116_472527,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_471136_473243 chr4_471136_471815;chr4_472081_473243 chr4_471816_472080 chr4_471036_471135;chr4_473244_473337 100.00 96.30 96.88 87.50 94.12 100.00 100.00 98.46 100.00 100.00 100.00 97.73 100.00 96.55 100.00 98.04 100.00 96.15 100.00 100.00 100.00 95.24 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 94.12 98.33 100.00 100.00 100.00 100.00 100.00 97.30 100.00 98.21 100.00 94.44 100.00 100.00 100.00 100.00 98.39 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Liprin-alpha chr2L + chr2L_6727335_6727862 chr2L_6727334_6727335;chr2L_6727862_6727863 chr2L_6727326_6727334;chr2L_6727863_6728780 8.68 19.05 4.35 17.65 10.53 9.09 0.00 8.89 12.96 NA 0.00 10.00 5.56 9.09 9.68 6.82 14.29 11.11 10.71 8.47 0.00 5.36 6.25 12.00 NA 3.85 15.38 0.00 3.92 5.71 4.17 10.53 9.52 8.93 8.33 14.81 22.73 0.00 6.90 11.59 0.00 6.06 0.00 10.00 0.00 0.00 11.11 3.80 9.09 NA 11.54 14.29 0.00 NA 6.06 10.53 NA 4.65 K cassette CG6364,I_chr3R_20116610_20116825 chr3R + chr3R_20116610_20116825 chr3R_20116610_20116666;chr3R_20116765_20116825 chr3R_20116667_20116764 chr3R_20116510_20116609;chr3R_20116826_20116874 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette CG14619,RI_chrX_21860097_21868647,I_chrX_21865109_21865522,I_chrX_21869837_21869915 chrX + chrX_21860097_21868000 chrX_21860097_21864235;chrX_21865109_21868000 chrX_21864236_21865108 chrX_21859997_21860096;chrX_21868001_21868211 35.78 29.23 29.41 50.00 39.53 34.88 44.74 43.33 36.81 55.77 29.63 40.37 28.57 41.18 40.00 61.36 30.00 35.71 47.06 32.70 54.17 24.51 35.56 23.16 24.62 50.00 22.22 33.33 33.33 65.91 50.00 38.89 67.61 35.96 36.84 62.38 21.52 21.25 25.00 35.78 41.38 36.36 53.85 23.86 43.48 33.33 25.00 55.13 44.19 23.08 23.81 22.03 31.25 17.39 37.25 28.57 20.51 64.52 K alternative_donor CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_120266_120510 chr2L_120266_120420 chr2L_120225_120265;chr2L_120511_120512 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 NA 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 NA NA 94.44 100.00 100.00 100.00 N cassette kis,I_chr2L_228282_230537,RI_chr2L_231035_231947,RI_chr2L_242745_242800,I_chr2L_242926_250756 chr2L - chr2L_227548_229172 chr2L_227548_228132;chr2L_228282_229172 chr2L_228133_228281 chr2L_227372_227547;chr2L_229173_229382 100.00 100.00 100.00 91.26 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N jcn_only_AD CG8051,I_chrX_19198128_19201351 chrX - chrX_19198128_19199330;chrX_19198128_19199326 chrX_19198128_19201671 chrX_19198028_19198127;chrX_19201672_19201734 49.20 NA NA NA NA NA NA NA 68.00 NA NA 70.83 NA NA NA 60.00 NA NA NA NA NA NA 50.00 NA NA NA NA NA 21.43 NA NA NA 29.17 NA NA NA NA NA NA 48.39 NA NA NA NA NA 31.03 NA 21.21 54.84 NA 34.78 NA NA NA NA NA NA 54.29 K alternative_acceptor CG4267,I_chr2L_2245495_2245550 chr2L + chr2L_2242946_2243564 chr2L_2242946_2243559 chr2L_2242697_2242945;chr2L_2243565_2244415 100.00 93.75 90.91 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.67 94.12 100.00 100.00 100.00 92.31 96.88 100.00 94.44 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 93.75 100.00 97.06 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA I_chr2R_17169674_17170491,CG10069,I_chr2R_17169897_17170495,I_chr2R_17170432_17170491,I_chr2R_17171765_17171886 chr2R + chr2R_17169897_17170491;chr2R_17169897_17170495 chr2R_17169897_17169960 chr2R_17169889_17169896 0.00 4.35 0.00 1.19 2.13 1.47 0.00 3.12 1.08 1.32 0.00 0.00 3.92 2.04 0.00 0.00 0.00 0.00 2.38 1.53 0.00 0.95 2.50 2.35 0.00 0.00 0.00 0.00 0.00 1.52 0.00 1.75 4.35 1.05 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 2.50 0.00 0.00 1.59 0.00 1.55 0.00 0.00 0.00 0.00 1.82 3.45 0.00 0.00 0.00 1.20 K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27761114_27762991,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27707594_27801169 chr3R_27707594_27747354;chr3R_27747397_27784756;chr3R_27784850_27795477;chr3R_27795508_27801169 chr3R_27747355_27747396;chr3R_27784757_27784849;chr3R_27795478_27795507 chr3R_27707494_27707593;chr3R_27801170_27801219 90.00 NA NA NA 100.00 NA 100.00 100.00 NA NA NA 80.00 75.00 NA 100.00 100.00 NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA 75.00 NA NA NA K intron_retention syd,I_chr3L_7924891_7925400 chr3L - chr3L_7919938_7921016 chr3L_7919937_7919938;chr3L_7921016_7921017 chr3L_7919673_7919937;chr3L_7921017_7921217 14.29 11.11 14.29 3.45 NA 20.00 17.39 5.00 12.82 30.00 19.05 16.67 NA 6.67 19.05 13.64 11.76 5.00 22.22 11.43 21.43 37.50 18.18 17.39 35.00 16.67 10.71 12.50 12.00 0.00 24.00 NA 8.00 22.73 14.29 23.81 23.33 9.52 12.50 0.00 20.83 13.16 NA 13.04 15.00 9.68 15.00 14.29 11.43 15.62 24.00 7.14 20.00 9.52 10.53 21.05 12.50 0.00 K alternative_donor mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818597_7818970 chr3R_7818597_7818853 chr3R_7818507_7818596;chr3R_7818971_7818995 18.75 7.89 14.29 13.43 5.26 18.75 52.17 21.54 11.76 12.50 21.43 28.07 21.43 23.91 15.79 26.92 17.02 12.50 21.43 26.53 12.00 2.63 20.00 16.67 NA 7.69 22.73 31.25 38.46 12.50 24.32 NA 13.04 21.43 NA NA 4.35 11.11 18.75 13.46 NA 14.08 18.42 16.67 25.00 26.92 18.18 29.41 20.27 21.05 21.43 12.50 NA NA 24.39 27.78 15.00 25.00 K intron_retention Ddip2,I_chr3L_252776_253313 chr3L - chr3L_255038_255162 chr3L_255037_255038;chr3L_255162_255163 chr3L_254697_255037;chr3L_255163_255715 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 6.67 NA 0.00 0.00 NA 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 NA 3.45 0.00 0.00 4.35 0.00 0.00 0.00 0.00 NA 2.56 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA 6.25 K intron_retention RpL34a chr3R - chr3R_21884640_21884701 chr3R_21884639_21884640;chr3R_21884701_21884702 chr3R_21884125_21884639;chr3R_21884702_21884773 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.17 0.00 0.00 0.00 0.00 0.27 0.11 0.00 0.17 0.00 0.15 0.11 0.11 0.00 0.11 0.00 0.00 0.00 0.40 0.32 0.00 0.15 0.00 0.00 0.00 0.20 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.24 0.00 0.00 0.18 0.14 0.00 0.00 0.09 0.11 0.00 0.05 0.05 0.16 K intron_retention CG9992 chrX - chrX_16277559_16278620 chrX_16277558_16277559;chrX_16278620_16278621 chrX_16277546_16277558;chrX_16278621_16278914 0.00 11.76 NA NA NA NA 0.00 3.12 0.00 NA 0.00 0.00 NA 0.00 0.00 3.23 0.00 0.00 9.09 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA 3.70 NA NA 0.00 NA 0.00 NA NA 0.00 0.00 11.76 NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2393243;chrX_2393712_2394269;chrX_2394396_2395151;chrX_2395275_2395659 chrX_2393244_2393711;chrX_2394270_2394395;chrX_2395152_2395274 chrX_2387149_2387248;chrX_2395660_2395759 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.59 3.85 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 1.12 2.27 2.94 0.00 1.45 0.00 0.00 1.67 0.00 0.00 0.00 0.76 0.00 3.23 1.12 0.00 1.25 0.99 0.00 0.00 0.00 1.39 NA 2.94 NA 0.00 0.00 0.00 0.00 0.00 2.08 NA 0.00 0.00 0.00 0.00 K jcn_only_AD CG15321,I_chrX_9578185_9579504,I_chrX_9578185_9579582,I_chrX_9578185_9580671,RI_chrX_9578185_9581011 chrX - chrX_9578185_9579504;chrX_9578185_9579535 chrX_9578185_9579582 chrX_9578085_9578184;chrX_9579583_9579597 4.45 NA NA NA NA NA NA 10.00 15.00 NA NA 0.00 NA 0.00 NA 4.35 NA NA NA 4.17 NA NA 9.09 NA NA NA NA NA 7.50 8.70 10.00 NA 0.00 NA NA NA NA NA NA 2.38 NA 4.00 NA 0.00 NA NA NA 10.13 4.55 NA 10.00 NA NA NA NA NA NA 0.00 K intron_retention nAcRbeta-21C chr2L + chr2L_546444_546564 chr2L_546443_546444;chr2L_546564_546565 chr2L_546380_546443;chr2L_546565_546632 1.96 0.36 1.42 1.46 1.83 1.30 2.79 1.86 1.69 6.25 0.87 2.66 0.96 3.50 3.20 2.05 0.00 0.86 1.97 1.32 0.47 10.29 2.80 2.29 0.90 1.86 1.45 6.67 5.80 2.17 2.04 3.17 2.31 1.78 1.12 3.88 1.59 1.96 2.36 5.41 3.03 1.75 1.52 1.35 5.88 2.66 0.00 8.24 1.86 3.12 2.70 2.31 0.88 1.69 1.90 2.21 0.57 2.13 K alternative_acceptor Trf,I_chr2L_8073126_8073167 chr2L + chr2L_8073126_8073196 chr2L_8073126_8073167 chr2L_8073026_8073125;chr2L_8073197_8073267 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 3.85 0.00 2.17 2.27 0.00 0.00 0.00 3.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 3.03 0.00 1.43 0.00 0.00 2.78 0.00 0.00 1.32 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 1.54 1.00 K jcn_only_AD Nedd4,RI_chr3L_17523407_17523908,I_chr3L_17523717_17523908,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17523407_17523908 chr3L_17523523_17523908 chr3L_17523909_17524008;chr3L_17523307_17523406 100.00 100.00 100.00 100.00 100.00 100.00 93.62 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 97.73 96.30 97.56 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 96.77 100.00 100.00 100.00 98.89 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.70 100.00 100.00 100.00 100.00 NA 98.39 NA NA 100.00 K alternative_donor CG16936,RI_chr2R_20655101_20655166,I_chr2R_20660319_20660496 chr2R - chr2R_20655101_20655161;chr2R_20655101_20655620;chr2R_20655101_20655166 chr2R_20655101_20655476 chr2R_20655001_20655100;chr2R_20655621_20655665 3.23 4.35 0.00 0.00 0.00 0.00 4.08 3.23 0.75 0.00 0.00 3.57 0.00 2.22 6.00 0.00 3.57 0.00 2.00 2.70 4.00 0.00 4.35 4.00 0.00 4.76 4.35 14.29 7.41 13.79 10.17 4.44 3.23 0.00 4.44 8.33 1.10 0.00 1.37 1.80 0.00 3.65 3.45 7.84 7.23 10.64 6.15 7.55 3.47 2.50 3.45 0.00 0.00 1.96 0.00 2.70 2.50 3.96 K intron_retention Hmgs chr2R + chr2R_12224952_12226951 chr2R_12224951_12224952;chr2R_12226951_12226952 chr2R_12224883_12224951;chr2R_12226952_12228760 25.00 NA NA NA NA NA 25.00 NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG1486 chrX + chrX_21198024_21198087 chrX_21198023_21198024;chrX_21198087_21198088 chrX_21197830_21198023;chrX_21198088_21199018 0.00 0.00 0.00 3.51 1.27 2.53 1.23 0.88 0.72 1.43 0.00 1.71 0.00 0.00 2.15 0.00 0.00 0.00 0.00 1.30 0.00 0.00 2.02 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 1.03 1.32 0.00 0.00 0.00 0.83 1.32 0.00 2.38 2.78 0.71 1.45 1.15 0.00 0.67 0.00 1.48 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 K jcn_only_AD CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157014_157316,RI_chr4_157014_157504,I_chr4_157794_157864 chr4 + chr4_156998_157316 chr4_157014_157316 chr4_157317_157403;chr4_156984_156997 65.00 NA NA NA NA NA NA NA 65.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20343948_20344654 chr2L_20343947_20343948;chr2L_20344654_20344655 chr2L_20343743_20343947;chr2L_20344655_20344722 6.55 8.89 5.71 14.29 10.71 0.00 23.26 11.54 6.74 0.00 4.55 3.70 15.79 2.50 8.11 11.90 8.00 13.04 6.25 16.36 0.00 5.43 8.20 6.52 6.25 6.45 8.51 6.58 2.94 8.00 6.90 NA 10.26 14.81 3.23 0.00 4.44 5.56 4.44 6.90 3.45 9.46 8.33 3.45 6.25 2.38 11.63 16.67 14.29 5.80 10.42 0.00 0.00 0.00 7.14 12.20 4.62 0.00 K intron_retention CG5746,Golgin84 chr3R - chr3R_20182208_20182262 chr3R_20182207_20182208;chr3R_20182262_20182263 chr3R_20181719_20182207;chr3R_20182263_20183645 5.56 8.70 0.00 15.00 NA 11.76 8.00 16.67 11.76 NA NA 0.00 0.00 10.53 0.00 19.05 NA 0.00 4.76 7.32 NA NA 10.00 3.45 NA 0.00 17.65 46.67 6.67 NA 9.09 NA 0.00 6.25 0.00 NA 2.63 0.00 9.68 11.54 14.29 0.00 0.00 0.00 0.00 9.09 0.00 NA 9.09 5.56 0.00 NA 4.17 5.56 10.53 0.00 2.70 0.00 K mutually_exclusive HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13165623_13176198,chrX_13176263_13179235 chrX_13165623_13170467,chrX_13170581_13179235 chrX_13176199_13176262 chrX_13170468_13170580 chrX_13165515_13165622;chrX_13179236_13179281 33.33 NA NA 14.29 60.00 NA 20.00 50.00 33.33 NA 0.00 25.00 27.27 57.14 42.86 38.46 37.50 37.50 42.86 25.00 NA 16.67 50.00 33.33 20.00 23.53 20.00 NA 36.36 33.33 33.33 NA 44.44 0.00 NA 17.65 NA 25.00 NA 30.00 33.33 30.00 NA NA 60.00 33.33 NA 30.00 20.00 NA 38.46 NA NA NA 20.00 NA NA NA K intron_retention brm,I_chr3L_15968197_15968325 chr3L - chr3L_15964334_15964393 chr3L_15964333_15964334;chr3L_15964393_15964394 chr3L_15963115_15964333;chr3L_15964394_15965185 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8929 chr2R + chr2R_16215069_16215371 chr2R_16215068_16215069;chr2R_16215371_16215372 chr2R_16214949_16215068;chr2R_16215372_16215639 100.00 100.00 NA 100.00 NA 88.89 95.00 94.74 95.45 NA NA 95.24 NA 88.89 100.00 100.00 100.00 NA 100.00 93.33 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 NA NA 100.00 100.00 NA NA NA 100.00 100.00 100.00 95.24 100.00 100.00 NA 100.00 NA NA 94.12 90.91 100.00 NA 100.00 NA 100.00 NA NA NA K cassette eas,REI_chrX_16172581_16175010,REI_chrX_16172581_16177702 chrX + chrX_16172581_16174918;chrX_16172581_16175010 chrX_16172581_16172726;chrX_16172795_16175010,chrX_16172795_16174918 chrX_16172727_16172794 chrX_16172481_16172580;chrX_16175011_16175110 6.90 NA NA NA NA NA NA 9.09 4.00 NA NA 4.55 NA NA 5.00 10.71 NA NA 5.56 12.50 NA NA 7.14 NA NA NA NA NA NA NA 11.11 NA NA 5.00 20.00 NA NA NA NA NA NA 4.17 7.69 NA NA NA NA NA 16.13 NA NA NA NA NA 5.56 6.67 NA NA K intron_retention CG17278 chr3R - chr3R_16847027_16847126 chr3R_16847026_16847027;chr3R_16847126_16847127 chr3R_16846757_16847026;chr3R_16847127_16847306 0.00 0.00 0.00 0.36 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.26 0.00 0.42 1.08 0.00 0.00 0.00 0.31 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chr2R_19244231_19244378,vir chr2R - chr2R_19252911_19252969 chr2R_19252910_19252911;chr2R_19252969_19252970 chr2R_19250023_19252910;chr2R_19252970_19253646 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 K alternative_donor CG1347 chr3R + chr3R_1495515_1499211;chr3R_1495452_1499211 chr3R_1496295_1499211 chr3R_1499212_1502282;chr3R_1495435_1495451 100.00 100.00 100.00 92.31 93.33 93.33 97.44 95.65 100.00 87.50 100.00 82.22 92.59 96.00 100.00 97.44 100.00 94.12 96.43 95.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.95 95.24 95.24 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 95.24 96.43 100.00 100.00 91.67 100.00 95.45 100.00 95.45 100.00 100.00 100.00 95.83 100.00 100.00 100.00 K jcn_only_AA I_chrX_17546225_17546531,CG8211 chrX - chrX_17549488_17549815 chrX_17549492_17549815 chrX_17549816_17550846;chrX_17547855_17549487 97.33 98.08 97.96 95.38 94.12 96.88 96.49 100.00 100.00 93.94 96.00 98.44 100.00 96.88 100.00 97.67 100.00 100.00 100.00 93.98 100.00 98.20 97.37 95.00 100.00 97.67 94.64 98.21 98.31 97.96 83.67 96.77 95.79 100.00 91.30 100.00 94.34 92.16 98.39 97.62 96.55 97.33 96.67 98.59 98.39 96.36 92.45 96.77 96.39 95.24 95.59 100.00 95.35 100.00 96.97 97.73 90.62 95.83 K intron_retention mew,I_chrX_13133259_13150649 chrX - chrX_13117886_13119016 chrX_13117885_13117886;chrX_13119016_13119017 chrX_13117859_13117885;chrX_13119017_13119144 0.00 NA NA NA NA NA NA 11.76 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 13.33 NA NA 0.00 0.00 NA NA NA 0.00 NA NA NA NA NA NA 5.56 NA NA NA NA NA NA NA NA NA K intron_retention CG42574,I_chr3R_621543_625413,I_chr3R_621546_625413 chr3R - chr3R_622790_625413 chr3R_622789_622790;chr3R_625413_625414 chr3R_622387_622789;chr3R_625414_625513 60.00 77.78 63.64 53.57 NA NA 52.63 80.00 51.11 60.00 NA 60.00 NA NA 66.67 73.33 NA NA NA 62.96 NA 70.00 63.41 81.82 52.00 NA 69.57 51.92 32.43 66.67 NA NA 47.92 63.16 50.00 61.54 73.47 54.17 69.23 45.16 41.67 61.54 NA 66.67 41.67 41.67 50.00 35.00 62.50 NA 52.17 81.25 47.06 NA NA NA NA 36.36 K intron_retention cdi chr3R - chr3R_14875954_14876012 chr3R_14875953_14875954;chr3R_14876012_14876013 chr3R_14875868_14875953;chr3R_14876013_14876211 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.04 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention deltaCOP,I_chrX_1754047_1754089,I_chrX_1755132_1755191,E_chrX_1755139_1755188,I_chrX_1757755_1757801 chrX - chrX_1755132_1755188 chrX_1755131_1755132;chrX_1755188_1755189 chrX_1755039_1755131;chrX_1755189_1755288 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.41 2.47 11.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.40 K intron_retention CG8165,CG8176,I_chr3R_5348614_5348964 chr3R + chr3R_5341890_5346774 chr3R_5341889_5341890;chr3R_5346774_5346775 chr3R_5341790_5341889;chr3R_5346775_5347072 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 NA 0.00 2.00 0.00 0.00 0.00 1.77 0.00 0.00 3.23 1.61 0.00 0.00 0.00 0.00 0.00 0.00 7.14 NA 0.00 0.00 2.94 NA 0.00 1.98 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.09 0.00 0.00 NA 0.00 0.00 0.00 2.48 7.69 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 K jcn_only_AA F_chr3RHet_1879085_1900358,Alg-2 chr3RHet - chr3RHet_1898928_1898983;chr3RHet_1898930_1898983;chr3RHet_1898919_1898983 chr3RHet_1898895_1898983 chr3RHet_1898984_1899090;chr3RHet_1898558_1898894 3.17 2.63 5.15 3.12 1.64 0.00 1.76 3.40 4.00 0.00 2.70 5.13 4.55 2.16 5.65 4.07 3.96 2.06 3.25 1.55 2.53 0.00 5.19 7.45 5.48 6.19 0.00 4.76 4.48 2.38 4.37 0.00 NA 4.85 5.26 3.70 7.55 4.55 1.10 3.49 6.67 2.93 2.25 2.27 16.28 2.30 2.33 3.23 5.84 2.20 1.25 7.78 1.59 1.79 5.52 1.77 2.29 2.78 K jcn_only_AD CG16936,RI_chr2R_20655101_20655166,I_chr2R_20660319_20660496 chr2R - chr2R_20655101_20655161;chr2R_20655101_20655620;chr2R_20655101_20655476 chr2R_20655101_20655166 chr2R_20655001_20655100;chr2R_20655621_20655665 0.00 1.01 0.00 0.00 1.59 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 1.30 0.00 14.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 NA 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 1.37 K jcn_only_AD CG14872,REI_chr3R_11334285_11334336 chr3R - chr3R_11334285_11334385 chr3R_11334285_11334336 chr3R_11334185_11334284;chr3R_11334386_11334436 12.75 14.29 18.92 11.11 24.44 12.50 30.34 12.96 13.53 10.26 14.89 21.21 17.24 10.34 13.92 12.37 22.81 15.19 15.07 12.40 21.28 4.08 9.24 12.64 1.92 9.09 1.80 4.29 13.04 15.00 17.86 6.41 5.05 19.35 8.82 15.66 14.43 8.57 8.11 13.45 2.96 18.40 20.83 10.60 11.54 6.11 12.75 7.26 17.91 13.85 12.10 10.81 15.71 22.67 10.84 12.82 11.48 10.86 K intron_retention CG12065,CE_chrX_8469528_8477573 chrX + chrX_8478609_8479842 chrX_8478608_8478609;chrX_8479842_8479843 chrX_8478489_8478608;chrX_8479843_8479951 1.06 0.85 0.32 0.28 0.83 0.00 1.45 0.90 1.14 0.00 0.37 1.89 2.43 3.75 1.91 1.66 0.00 0.59 1.86 0.79 0.64 2.10 1.96 1.32 1.93 0.70 2.00 2.46 4.17 0.89 2.34 1.04 1.58 1.39 2.61 1.02 0.87 1.05 1.52 2.72 1.02 0.96 0.00 0.00 1.05 1.45 1.06 3.61 1.10 1.60 0.99 0.84 0.68 0.00 1.49 0.60 1.29 1.29 K intron_retention gp210,I_chr2R_1653709_1654789,I_chr2R_1655359_1655422 chr2R + chr2R_1658362_1659420 chr2R_1658361_1658362;chr2R_1659420_1659421 chr2R_1658311_1658361;chr2R_1659421_1659492 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_donor CG8531,RI_chr2R_10144869_10144912 chr2R + chr2R_10145224_10145276;chr2R_10145070_10145276 chr2R_10145138_10145276 chr2R_10145277_10145393;chr2R_10144926_10145069 1.25 1.25 1.04 0.83 1.59 1.41 0.00 5.07 9.09 2.04 1.30 0.69 0.00 1.59 1.01 7.44 0.00 1.20 0.00 0.48 1.28 22.58 0.99 0.96 1.59 0.00 0.82 1.03 1.30 1.39 17.16 1.61 1.05 5.69 1.61 1.61 1.03 11.69 0.95 0.91 1.92 0.65 1.64 1.16 1.47 1.18 1.25 1.54 0.75 8.26 8.85 0.00 1.75 1.45 1.10 1.11 1.03 1.69 N alternative_donor Idgf2 chr2L + chr2L_16449744_16449802 chr2L_16449748_16449802 chr2L_16449803_16449871;chr2L_16449665_16449743 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG10737 chr2R + chr2R_15062754_15063770 chr2R_15062814_15063770 chr2R_15063771_15063852;chr2R_15062592_15062753 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Acf1,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27624356_27624427 chr3R_27624356_27624414 chr3R_27624256_27624355;chr3R_27624428_27624527 100.00 95.45 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 97.22 94.12 100.00 100.00 98.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 95.00 100.00 97.44 94.12 100.00 100.00 100.00 97.22 96.43 100.00 96.15 100.00 100.00 100.00 100.00 100.00 96.77 98.08 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Cyp311a1 chrX - chrX_11925250_11925308 chrX_11925249_11925250;chrX_11925308_11925309 chrX_11924872_11925249;chrX_11925309_11925479 30.77 NA NA NA NA NA 30.77 NA NA NA NA 26.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Vinc,I_chrX_2114558_2115574,I_chrX_2114558_2116113 chrX - chrX_2114558_2116264 chrX_2114558_2116113 chrX_2114458_2114557;chrX_2116265_2116308 0.00 0.00 0.92 0.75 0.00 0.00 2.70 0.70 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 1.20 0.00 0.00 0.95 0.00 0.00 0.00 0.00 4.35 3.12 7.69 0.00 0.00 0.00 0.70 0.00 0.00 0.00 1.56 1.30 0.00 0.00 2.63 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 0.27 0.56 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 K cassette CG33232,I_chr3L_2484838_2495010 chr3L + chr3L_2484838_2495010 chr3L_2484838_2485072;chr3L_2485229_2495010 chr3L_2485073_2485228 chr3L_2484830_2484837;chr3L_2495011_2495110 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 92.86 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention RpL29,I_chr2R_17184688_17191389 chr2R + chr2R_17181380_17181558 chr2R_17181379_17181380;chr2R_17181558_17181559 chr2R_17181355_17181379;chr2R_17181559_17181664 0.24 0.39 0.04 0.15 0.04 0.11 0.10 0.03 0.10 0.14 0.07 0.12 0.07 0.14 0.07 0.17 0.13 0.13 0.18 0.12 0.09 1.72 0.65 0.20 0.00 0.09 1.56 1.01 0.81 1.90 0.25 0.94 1.71 0.21 1.20 1.52 0.24 0.27 0.28 0.25 1.21 0.14 0.15 0.40 0.33 1.54 0.50 1.64 0.30 0.39 0.48 0.24 0.37 1.61 0.14 0.23 0.20 2.03 K intron_retention CG31619 chr2L + chr2L_21701181_21701763 chr2L_21701180_21701181;chr2L_21701763_21701764 chr2L_21700855_21701180;chr2L_21701764_21701938 14.69 16.92 15.49 15.94 10.74 13.39 17.05 17.37 11.39 6.67 25.40 11.23 34.72 13.85 14.48 9.32 10.71 20.90 14.69 16.73 21.21 13.64 12.46 12.56 15.17 10.71 21.08 33.73 51.47 9.33 12.16 19.51 13.51 9.55 17.89 34.07 8.49 12.16 11.11 13.24 31.67 11.20 11.11 15.45 21.74 18.27 17.81 15.38 10.65 33.61 14.49 13.39 16.92 25.62 11.59 18.75 27.04 9.76 K alternative_acceptor RhoGAP92B chr3R + chr3R_15737582_15738036 chr3R_15737582_15738033 chr3R_15736615_15737581;chr3R_15738037_15739398 100.00 93.75 100.00 98.75 100.00 100.00 98.65 100.00 98.98 100.00 97.83 98.75 100.00 97.87 100.00 98.82 97.62 100.00 98.21 98.11 100.00 98.25 98.59 98.15 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 98.44 100.00 100.00 98.94 100.00 100.00 100.00 97.62 100.00 100.00 96.59 98.28 98.33 100.00 97.22 100.00 100.00 97.92 98.36 100.00 K intron_retention CG34394,I_chr2L_3365674_3365965 chr2L - chr2L_3361444_3362998 chr2L_3361443_3361444;chr2L_3362998_3362999 chr2L_3360996_3361443;chr2L_3362999_3363195 3.98 0.00 0.00 0.00 0.00 0.00 8.00 0.00 6.67 5.26 0.00 0.00 6.67 NA 0.00 20.00 6.67 0.00 13.33 0.00 0.00 17.27 3.33 0.00 7.41 NA 7.69 5.26 4.11 5.71 0.00 3.85 10.34 0.00 0.00 6.25 2.13 0.00 0.00 4.76 6.25 8.00 NA 9.38 8.33 6.45 0.00 7.21 6.52 7.14 0.00 5.26 0.00 NA 0.00 0.00 NA 7.41 K intron_retention CG7766,I_chrX_8993495_8994545,I_chrX_8991338_8991387 chrX - chrX_8990009_8991387 chrX_8990008_8990009;chrX_8991387_8991388 chrX_8989859_8990008;chrX_8991388_8991487 0.00 0.00 0.00 4.44 0.00 0.00 15.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 NA 0.00 3.64 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 3.12 0.00 0.00 0.00 3.12 0.00 0.00 0.00 2.06 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 K alternative_acceptor Paip2,noncoding_16407,I_chr3R_8809774_8809832 chr3R + chr3R_8807110_8809456 chr3R_8807110_8809436 chr3R_8807046_8807109;chr3R_8809457_8809605 0.00 0.00 0.00 0.00 0.00 0.00 2.25 1.23 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 2.38 2.38 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8445229_8456103,chr3L_8456338_8456400 chr3L_8445229_8455071,chr3L_8455204_8456400 chr3L_8456104_8456337 chr3L_8455072_8455203 chr3L_8445200_8445228;chr3L_8456401_8460667 83.34 NA NA 66.67 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N jcn_only_AA CG34394,I_chr2L_3365674_3365965,RI_chr2L_3365677_3365965,I_chr2L_3365701_3365757 chr2L - chr2L_3365976_3367244;chr2L_3365677_3367244 chr2L_3365674_3367244 chr2L_3367245_3367719;chr2L_3365601_3365673 29.10 30.56 32.50 20.00 23.08 30.77 26.79 29.51 31.37 25.71 14.63 22.77 28.57 19.44 25.71 28.07 27.50 38.89 30.30 29.35 37.78 28.69 32.76 28.85 40.38 29.41 28.33 31.82 16.67 28.07 35.71 NA 26.53 22.03 29.82 32.20 25.51 24.07 28.72 32.00 NA 37.00 25.93 38.46 24.00 34.62 40.62 44.00 32.73 32.26 37.14 41.67 25.81 19.23 39.02 20.00 28.57 NA K cassette Pkn,CI_chr2R_5143544_5146344,I_chr2R_5171635_5172166 chr2R - chr2R_5143215_5146344;chr2R_5143544_5146344 chr2R_5143544_5144914,chr2R_5143215_5144914;chr2R_5145566_5146344 chr2R_5144915_5145565 chr2R_5143018_5143214;chr2R_5146345_5146444 8.33 5.13 9.68 8.89 8.00 9.38 4.55 5.71 11.48 9.84 9.09 14.04 15.00 9.09 10.00 11.43 4.55 3.45 10.53 12.00 4.76 8.51 8.54 11.29 7.32 5.00 5.06 5.48 10.14 6.67 8.33 10.71 18.00 9.30 12.12 8.06 10.71 7.55 5.10 6.98 8.33 9.23 8.33 4.71 9.38 5.13 4.88 11.76 8.16 4.44 7.25 5.56 8.70 7.41 3.57 9.68 7.41 11.43 K intron_retention CG18004 chr2R + chr2R_6773038_6773094 chr2R_6773037_6773038;chr2R_6773094_6773095 chr2R_6772971_6773037;chr2R_6773095_6773178 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.00 0.00 0.00 2.94 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Gp150,I_chr2R_18205316_18205386,RI_chr2R_18206133_18212679,I_chr2R_18211853_18212679,RI_chr2R_18212600_18212679,I_chr2R_18213233_18213308 chr2R + chr2R_18205243_18205386 chr2R_18205242_18205243;chr2R_18205386_18205387 chr2R_18205216_18205242;chr2R_18205387_18205459 14.43 12.20 11.56 8.55 9.57 15.35 29.76 14.00 10.38 18.03 10.47 14.10 16.10 13.16 13.11 8.82 9.55 8.71 13.15 15.92 10.63 10.94 23.35 21.54 43.51 29.38 49.12 34.69 47.56 10.61 12.59 17.39 10.69 12.15 16.87 43.04 14.16 22.83 19.88 18.97 34.78 10.26 9.77 27.14 9.09 25.00 17.24 14.43 10.79 26.23 18.08 13.33 15.87 16.00 12.25 18.18 14.10 15.48 K jcn_only_AA CG7110,E_chr2L_13399145_13399217,CR_chr2L_13405706_13410507 chr2L + chr2L_13399141_13399217 chr2L_13399141_13399192 chr2L_13399135_13399140;chr2L_13399218_13399317 0.00 4.00 0.00 1.85 NA 3.03 5.13 1.79 0.00 NA 9.52 0.00 0.00 2.27 0.00 3.39 NA 3.70 2.63 1.67 0.00 8.70 3.03 0.00 0.00 0.00 2.33 NA 0.00 NA 2.08 NA NA 0.00 3.03 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 4.55 NA NA 0.00 0.00 3.53 0.00 0.00 3.33 NA NA 3.57 NA NA NA K intron_retention CG9684 chr3R - chr3R_4187404_4187629 chr3R_4187403_4187404;chr3R_4187629_4187630 chr3R_4186522_4187403;chr3R_4187630_4188103 0.00 0.00 0.00 31.82 0.00 4.35 6.25 0.00 0.00 NA 0.00 0.00 7.41 0.00 0.00 2.13 4.55 0.00 0.00 0.00 0.00 NA 9.09 0.00 0.00 8.33 0.00 NA NA NA 0.00 NA NA 4.65 12.50 7.69 0.00 NA 9.09 0.00 NA 4.65 0.00 12.50 NA 0.00 0.00 NA 2.13 3.85 4.35 NA NA NA 0.00 0.00 5.56 0.00 K alternative_acceptor Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5006553_5008568;chr2R_5006553_5007804;chr2R_5006553_5008598 chr2R_5006553_5008282 chr2R_5006405_5006552;chr2R_5008599_5008637 49.02 40.91 45.24 30.00 60.61 57.58 66.67 60.98 59.04 44.19 70.00 27.08 64.86 46.43 55.81 48.00 27.59 46.43 58.97 57.84 61.29 29.41 44.87 35.71 46.81 26.32 46.55 48.65 50.00 54.35 51.61 49.02 50.00 48.33 52.38 25.42 35.59 35.42 33.33 52.13 52.63 51.35 67.65 38.64 36.36 49.15 52.27 64.71 61.43 45.61 50.00 47.22 44.19 41.46 62.50 46.30 53.57 67.57 K alternative_donor CG13551,I_chr2R_19265701_19270570 chr2R - chr2R_19270646_19270887 chr2R_19270646_19270842 chr2R_19270612_19270645;chr2R_19270888_19270938 6.75 4.74 6.41 8.20 4.29 5.23 6.31 7.24 4.11 3.23 3.05 6.56 5.62 6.36 5.49 5.03 3.03 7.33 5.16 8.37 4.22 15.00 19.23 17.95 11.76 6.45 19.05 NA 10.00 26.32 5.45 6.38 5.71 3.77 13.64 12.00 12.79 4.62 10.87 25.45 8.00 6.91 4.60 10.78 7.50 12.24 18.75 3.85 3.53 11.11 16.67 11.76 11.94 14.55 4.79 6.60 8.77 4.00 K jcn_only_AA Galpha49B,I_chr2R_8501587_8501648,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500357_8501759;chr2R_8500357_8501071 chr2R_8500357_8501648 chr2R_8500333_8500356;chr2R_8501760_8501850 5.79 NA NA NA NA NA 15.00 6.90 2.78 NA NA 6.82 0.00 0.00 NA 7.41 NA NA NA 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA 4.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.11 NA NA NA NA NA NA NA NA NA K intron_retention CG30392,CG30390 chr2R - chr2R_17178476_17178536 chr2R_17178475_17178476;chr2R_17178536_17178537 chr2R_17178451_17178475;chr2R_17178537_17179086 90.45 NA 90.00 76.19 NA NA 77.78 92.31 80.00 NA NA 77.27 53.85 90.00 90.00 85.71 NA NA 87.50 86.96 100.00 81.82 100.00 90.91 NA 100.00 NA NA 94.44 90.00 90.00 100.00 94.44 94.44 100.00 90.91 NA NA NA 69.23 95.00 94.74 NA 100.00 81.82 94.74 80.00 100.00 85.29 83.33 NA 90.00 66.67 100.00 91.67 90.91 93.33 98.41 K intron_retention Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2611558_2611638 chr3L_2611557_2611558;chr3L_2611638_2611639 chr3L_2611316_2611557;chr3L_2611639_2611710 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.59 0.45 0.00 0.91 0.36 0.35 0.32 1.66 0.00 0.57 0.00 0.00 0.31 0.27 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.64 0.00 0.00 0.21 0.00 0.39 0.32 0.00 0.32 0.62 0.00 0.00 0.30 0.00 0.28 0.60 0.42 0.27 0.00 0.64 0.00 0.38 0.00 0.00 0.00 K jcn_only_AD tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_562850_562904 chr3R_562850_562902 chr3R_562745_562849;chr3R_562905_562974 94.35 92.05 95.45 93.97 94.05 96.03 93.85 94.10 94.58 96.30 92.02 94.55 94.41 94.24 92.15 92.36 94.25 93.09 94.35 95.26 93.89 94.32 94.25 94.59 95.58 93.07 94.62 96.33 91.57 92.16 93.06 94.49 94.21 94.59 96.03 94.97 94.37 97.09 97.22 95.45 96.08 92.61 88.61 94.64 95.36 92.51 97.55 93.55 94.13 96.71 93.20 96.30 95.74 93.41 93.57 94.52 95.95 91.74 N intron_retention noncoding_4261 chr2L + chr2L_21930182_21930326 chr2L_21930181_21930182;chr2L_21930326_21930327 chr2L_21930148_21930181;chr2L_21930327_21930694 2.63 4.04 1.20 3.70 0.00 0.00 3.24 1.92 2.76 1.75 1.09 3.70 0.00 2.63 2.44 3.00 0.00 3.17 4.35 2.91 3.23 3.54 3.10 2.90 3.17 4.11 3.69 4.93 2.86 1.44 2.99 0.76 1.03 3.31 4.76 3.51 1.69 1.50 2.63 1.99 2.70 0.63 3.45 1.55 1.23 1.90 2.29 2.06 2.41 3.18 3.17 1.20 3.61 0.00 0.95 2.10 0.00 1.65 K intron_retention CG17715,I_chr2L_22741825_22741944,I_chr2L_22742106_22746918 chr2L + chr2L_22741825_22741945 chr2L_22741824_22741825;chr2L_22741945_22741946 chr2L_22741725_22741824;chr2L_22741946_22741987 18.18 23.08 13.51 30.49 13.73 19.23 40.54 16.50 12.96 14.81 27.78 20.48 8.96 12.24 16.00 12.50 15.69 11.76 20.55 15.60 20.93 13.51 16.22 18.18 30.43 22.64 30.51 34.78 45.45 11.63 29.09 8.51 10.77 20.45 19.35 47.62 19.35 18.52 28.12 20.37 17.07 13.89 7.81 22.22 8.93 15.87 23.81 12.63 16.95 18.18 29.03 24.14 10.34 19.05 13.89 16.67 18.92 8.40 K jcn_only_AD ZnT63C chr3L + chr3L_3304022_3304601;chr3L_3303837_3304601 chr3L_3303853_3304601 chr3L_3304602_3304665;chr3L_3303742_3303836 93.68 95.87 90.08 96.24 92.37 95.87 93.15 91.33 92.16 95.80 95.76 89.92 93.33 94.83 94.07 97.42 95.41 87.07 96.61 90.21 92.78 89.08 93.70 92.93 95.61 93.68 92.52 91.35 97.50 92.78 91.52 89.23 88.68 90.62 94.44 94.90 90.48 93.94 93.22 96.58 88.89 94.94 92.55 92.67 78.79 94.23 94.12 98.11 92.94 94.07 94.83 96.64 91.30 96.67 95.06 94.77 90.76 95.00 K jcn_only_AD CG10992,RI_chrX_13675767_13676018 chrX - chrX_13675767_13675842;chrX_13675767_13676018 chrX_13675767_13675872 chrX_13675699_13675766;chrX_13676019_13676118 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.13 0.00 0.00 0.10 0.18 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 K intron_retention RpS3A,I_chr4_87364_87465,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87533_87757 chr4_87532_87533;chr4_87757_87758 chr4_87466_87532;chr4_87758_87817 100.00 99.97 99.98 99.99 99.96 100.00 99.99 99.99 99.98 99.92 100.00 100.00 100.00 99.98 100.00 99.99 100.00 99.97 99.98 99.98 100.00 100.00 100.00 99.96 100.00 100.00 99.97 100.00 100.00 99.91 99.98 100.00 100.00 99.98 100.00 100.00 100.00 99.94 100.00 100.00 100.00 99.99 99.97 100.00 99.96 99.98 100.00 100.00 99.98 99.96 100.00 100.00 100.00 100.00 100.00 99.97 100.00 99.98 K alternative_donor CG13319,RI_chr2R_8812301_8816468,noncoding_6439,sugarbabe chr2R + chr2R_8812158_8816468 chr2R_8812334_8816468 chr2R_8816469_8816550;chr2R_8811927_8812157 83.33 NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA K alternative_acceptor CG14194 chrX + chrX_19088052_19088400;chrX_19088052_19088528 chrX_19088052_19088456 chrX_19087981_19088051;chrX_19088529_19089031 97.96 98.41 100.00 95.24 95.35 98.08 97.10 98.61 98.40 97.50 94.59 98.90 97.87 97.78 94.83 98.31 100.00 100.00 97.96 97.66 95.65 97.70 97.83 95.40 98.28 97.83 98.02 97.87 96.00 100.00 97.87 100.00 100.00 97.22 97.73 94.55 98.23 98.61 97.98 98.77 100.00 97.78 100.00 98.67 97.83 100.00 100.00 96.00 97.53 98.18 98.73 97.62 97.87 95.16 98.08 98.21 95.77 100.00 K alternative_acceptor Mocs1,I_chr3L_11064230_11064309 chr3L + chr3L_11064230_11064658 chr3L_11064230_11064309 chr3L_11064151_11064229;chr3L_11064659_11065510 2.17 0.00 8.33 15.00 6.67 0.00 5.26 5.26 5.71 5.26 NA 12.00 NA NA 0.00 13.33 NA 0.00 20.00 9.52 0.00 6.25 2.38 4.35 0.00 NA 2.22 1.67 6.52 0.00 0.00 7.69 2.17 4.76 0.00 0.00 0.00 0.00 0.00 1.96 0.00 6.67 NA 2.50 0.00 4.17 5.56 0.00 0.00 2.78 2.27 0.00 0.00 0.00 0.00 4.35 0.00 0.00 K alternative_acceptor SD23414,CG9125,I_chrX_16696492_16696589 chrX - chrX_16696492_16696589 chrX_16696503_16696589 chrX_16696590_16696689;chrX_16696392_16696491 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 94.44 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 96.43 100.00 100.00 97.83 100.00 100.00 100.00 97.22 95.45 97.50 98.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 96.97 97.44 98.68 K jcn_only_AA Tsp42Ea,CG30159 chr2R + chr2R_2880283_2881883 chr2R_2880283_2881877 chr2R_2880260_2880282;chr2R_2881884_2881989 99.05 96.49 100.00 99.03 100.00 97.83 97.91 100.00 99.51 97.30 100.00 100.00 97.14 100.00 98.63 100.00 97.56 100.00 96.92 100.00 100.00 96.73 99.07 100.00 100.00 100.00 97.50 99.05 100.00 98.31 98.47 100.00 100.00 99.02 98.55 100.00 96.30 100.00 96.97 99.14 100.00 98.40 96.67 97.94 100.00 98.70 98.95 95.83 100.00 97.89 100.00 100.00 96.23 100.00 98.99 100.00 98.82 97.30 K intron_retention CG7332,I_chrX_18779996_18780073,RI_chrX_18780777_18780878 chrX + chrX_18779996_18780052 chrX_18779995_18779996;chrX_18780052_18780053 chrX_18779896_18779995;chrX_18780053_18780776 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.62 0.00 0.00 0.00 10.00 12.20 0.00 9.09 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor inaE chrX + chrX_13678262_13679739;chrX_13678223_13679739 chrX_13678310_13679739 chrX_13679740_13679985;chrX_13677782_13678222 95.24 92.59 100.00 100.00 100.00 87.50 100.00 95.12 96.92 100.00 92.86 97.73 100.00 96.00 100.00 96.15 94.44 100.00 100.00 97.26 100.00 88.24 93.10 94.29 96.97 100.00 93.55 95.24 95.24 92.86 86.96 100.00 96.88 96.30 92.68 91.89 97.50 96.43 91.43 97.44 92.59 94.34 100.00 94.29 86.67 87.88 100.00 91.43 96.88 100.00 93.22 90.91 94.74 95.83 95.00 92.31 95.24 95.00 K intron_retention Spn,I_chr3L_2511764_2512148 chr3L - chr3L_2508574_2508638 chr3L_2508573_2508574;chr3L_2508638_2508639 chr3L_2508194_2508573;chr3L_2508639_2508865 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 2.94 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 NA 3.33 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 5.26 0.00 NA 0.00 0.00 0.00 NA K cassette Acyp2,CG4699 chr3R + chr3R_11618624_11618763 chr3R_11618624_11618678;chr3R_11618696_11618763 chr3R_11618679_11618695 chr3R_11618415_11618623;chr3R_11618764_11618873 100.00 100.00 92.31 100.00 100.00 100.00 100.00 92.86 100.00 100.00 NA 94.44 NA NA 91.67 100.00 NA 100.00 100.00 95.65 100.00 NA 92.31 100.00 85.71 100.00 100.00 NA 100.00 NA 100.00 100.00 88.89 100.00 90.00 90.91 90.00 100.00 100.00 93.33 90.91 100.00 90.00 75.00 100.00 94.12 92.31 100.00 94.44 100.00 100.00 100.00 100.00 93.33 100.00 92.86 100.00 100.00 K intron_retention I_chr3R_16141663_16144698,CG5077,I_chr3R_16147605_16147670 chr3R + chr3R_16146174_16147197 chr3R_16146173_16146174;chr3R_16147197_16147198 chr3R_16145951_16146173;chr3R_16147198_16147358 9.09 11.55 5.29 5.13 7.94 8.85 8.96 5.22 8.95 10.12 8.77 9.35 11.72 9.09 10.06 14.59 12.92 7.30 7.74 5.77 9.18 6.72 12.06 13.40 13.86 11.45 10.94 14.00 12.80 6.38 7.28 6.90 9.09 9.90 8.56 6.79 13.95 14.10 13.06 7.00 7.76 7.82 10.31 13.81 5.23 6.62 12.61 3.69 10.16 7.89 9.64 12.96 7.12 10.06 7.65 9.52 14.42 2.88 K intron_retention yip2 chr2L + chr2L_9915367_9915624 chr2L_9915366_9915367;chr2L_9915624_9915625 chr2L_9915165_9915366;chr2L_9915625_9915791 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.61 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 K intron_retention Mob2,RI_chr3L_11520443_11527440,CE_chr3L_11520917_11527526,RE_chr3L_11520925_11527489,RI_chr3L_11535932_11545929 chr3L - chr3L_11520443_11534877 chr3L_11520442_11520443;chr3L_11534877_11534878 chr3L_11520343_11520442;chr3L_11534878_11535292 6.67 5.00 3.45 0.00 0.00 8.33 28.57 10.64 10.96 NA 14.29 3.85 NA 7.41 0.00 11.11 9.52 3.57 9.52 7.02 5.88 14.89 4.26 2.86 5.26 8.33 6.25 12.50 0.00 10.53 0.00 10.53 16.67 6.67 12.12 6.45 4.41 2.94 4.00 5.88 0.00 8.22 9.09 0.00 11.76 10.81 3.57 9.68 8.06 10.81 6.90 3.85 0.00 0.00 7.69 0.00 6.25 8.33 K intron_retention bip2,RI_chr4_481674_487126,RI_chr4_483144_483680,RI_chr4_486609_487126 chr4 - chr4_481112_481199 chr4_481111_481112;chr4_481199_481200 chr4_481043_481111;chr4_481200_481282 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 100.00 98.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 100.00 100.00 100.00 100.00 98.44 100.00 100.00 100.00 96.97 100.00 100.00 98.31 100.00 K intron_retention Sep1 chrX + chrX_21229421_21230538 chrX_21229420_21229421;chrX_21230538_21230539 chrX_21229264_21229420;chrX_21230539_21230731 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 3.57 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 3.70 0.00 0.00 0.00 0.00 1.72 1.92 0.00 4.76 0.00 0.00 0.00 0.00 K jcn_only_AD yps,I_chr3L_12115255_12115627,RI_chr3L_12115255_12115645,I_chr3L_12115255_12115669,I_chr3L_12115877_12115936 chr3L - chr3L_12115255_12115775 chr3L_12115255_12115645 chr3L_12115155_12115254;chr3L_12115776_12115867 0.00 0.41 0.00 0.27 0.64 0.00 0.45 0.31 0.20 0.50 0.61 0.00 0.00 0.00 0.39 0.84 0.00 0.00 0.00 0.14 0.00 0.93 0.66 0.00 0.00 0.49 0.00 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.60 0.90 0.25 0.00 0.76 0.23 0.80 0.20 0.00 0.35 0.77 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.78 0.00 0.00 0.18 K intron_retention CG10289,I_chr3L_6163043_6163216 chr3L - chr3L_6163028_6163216 chr3L_6163027_6163028;chr3L_6163216_6163217 chr3L_6162943_6163027;chr3L_6163217_6163316 0.00 1.37 0.00 3.10 0.00 0.00 2.65 0.80 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 1.32 0.00 0.00 2.04 2.13 0.00 0.00 4.60 0.00 1.48 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.91 0.00 0.00 2.60 0.00 1.82 0.00 0.00 0.00 0.00 0.00 3.19 0.00 1.59 0.00 K intron_retention cryptocephal,noncoding_4181,I_chr2L_21311307_21311752,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21311307_21311752 chr2L_21311306_21311307;chr2L_21311752_21311753 chr2L_21311271_21311306;chr2L_21311753_21311852 98.33 98.33 98.70 94.81 96.55 98.51 97.16 99.15 98.62 100.00 98.08 96.55 98.65 96.49 98.81 94.97 98.41 98.75 96.30 100.00 94.64 98.08 93.85 100.00 97.96 98.25 98.53 99.12 95.21 98.73 96.52 98.84 97.32 96.49 98.11 97.40 98.68 97.87 98.48 97.67 98.77 98.57 98.00 93.88 97.27 96.58 98.53 96.19 98.44 98.89 98.39 95.31 100.00 100.00 98.82 95.40 100.00 98.67 N jcn_only_AA Hrb98DE,RI_chr3R_24429041_24431183 chr3R + chr3R_24429421_24429782;chr3R_24429421_24431183 chr3R_24429421_24429573 chr3R_24429330_24429420;chr3R_24431184_24431283 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14446 chrX + chrX_6122437_6122511 chrX_6122436_6122437;chrX_6122511_6122512 chrX_6122305_6122436;chrX_6122512_6122912 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA 9.52 NA NA NA NA NA NA 13.33 NA NA NA NA NA 0.00 NA NA NA K cassette CG5174,F_chr2R_14309059_14311473 chr2R + chr2R_14312172_14312844;chr2R_14311992_14312844 chr2R_14312172_14312376,chr2R_14311992_14312376;chr2R_14312582_14312844 chr2R_14312377_14312581 chr2R_14311831_14311991;chr2R_14312845_14312913 100.00 100.00 99.11 100.00 100.00 98.99 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.84 98.80 100.00 100.00 100.00 100.00 98.44 100.00 98.65 100.00 100.00 100.00 98.86 100.00 100.00 100.00 100.00 100.00 100.00 99.22 100.00 100.00 100.00 100.00 98.80 100.00 99.01 100.00 100.00 100.00 100.00 100.00 100.00 98.86 100.00 100.00 99.26 100.00 K jcn_only_AA bol,I_chr3L_9095908_9105733,RI_chr3L_9117011_9118271 chr3L - chr3L_9100796_9101055 chr3L_9100811_9101055 chr3L_9101056_9101135;chr3L_9100749_9100795 100.00 NA NA NA NA NA NA NA 90.48 NA NA 100.00 NA NA NA NA NA NA NA 96.43 NA 100.00 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 92.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention F_chr3R_7396835_7396923,wkd chr3R + chr3R_7407562_7409035 chr3R_7407561_7407562;chr3R_7409035_7409036 chr3R_7407293_7407561;chr3R_7409036_7409278 4.55 0.00 0.00 7.14 0.00 4.55 6.78 7.41 6.94 22.22 15.00 2.70 0.00 0.00 0.00 0.00 8.00 4.35 0.00 6.45 0.00 14.81 5.00 4.08 6.25 4.35 7.14 5.88 12.77 9.38 4.55 9.38 10.00 3.08 6.90 17.24 5.00 0.00 7.89 5.56 11.11 4.94 3.45 2.04 4.17 6.82 6.06 3.12 3.77 3.45 2.04 0.00 0.00 0.00 3.77 6.90 0.00 4.17 K jcn_only_AA CG7766,I_chrX_8993495_8994545,I_chrX_8991338_8991387 chrX - chrX_8991547_8991788 chrX_8991553_8991788 chrX_8991789_8992040;chrX_8991388_8991546 82.93 83.93 79.63 84.13 80.49 82.93 81.58 88.33 82.11 74.29 90.48 86.79 67.44 74.36 81.82 81.13 83.72 82.98 87.18 79.49 87.23 82.12 75.22 85.19 82.61 72.13 83.54 87.23 76.56 78.95 86.49 76.92 90.00 81.43 85.29 77.53 83.11 89.29 85.85 80.17 82.26 85.15 89.74 80.00 85.88 76.92 84.93 93.42 84.95 77.53 81.63 77.19 90.20 83.08 79.17 83.33 77.78 86.02 K intron_retention CG11739,REI_chr3R_205547_205633,RI_chr3R_205772_205830,I_chr3R_207254_207600 chr3R + chr3R_205547_205649 chr3R_205546_205547;chr3R_205649_205650 chr3R_205447_205546;chr3R_205650_205733 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.65 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.69 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 1.34 N multi_cassette CG1161,RI_chr3R_1181273_1181459,I_chr3R_1182079_1182146 chr3R + chr3R_1181273_1182146 chr3R_1181273_1181515;chr3R_1181665_1181724;chr3R_1181851_1182146 chr3R_1181516_1181664;chr3R_1181725_1181850 chr3R_1181173_1181272;chr3R_1182147_1182246 100.00 100.00 100.00 100.00 100.00 100.00 95.12 100.00 97.23 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.09 100.00 96.28 94.67 95.27 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.43 100.00 100.00 100.00 100.00 100.00 100.00 96.52 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.04 100.00 100.00 100.00 100.00 100.00 K intron_retention I_chr2R_19922148_19922210,sei,I_chr2R_19939693_19939776,I_chr2R_19946657_19946733,I_chr2R_19948517_19948682 chr2R + chr2R_19940112_19940177 chr2R_19940111_19940112;chr2R_19940177_19940178 chr2R_19940053_19940111;chr2R_19940178_19940252 28.18 41.67 NA 27.78 NA NA 38.89 47.06 30.43 NA 41.67 21.05 NA NA NA 43.75 NA 42.86 35.71 48.28 NA NA 33.33 15.00 NA NA NA NA NA 25.00 25.00 11.11 14.29 37.50 NA 25.00 37.50 14.29 22.73 17.39 23.53 40.00 NA NA 22.73 20.00 22.22 13.04 39.13 30.00 28.57 NA 30.77 35.71 25.00 29.41 14.81 24.14 K multi_cassette R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8088454_8105691 chr2L_8088454_8088664;chr2L_8088716_8089393;chr2L_8089737_8105691 chr2L_8088665_8088715;chr2L_8089394_8089736 chr2L_8088448_8088453;chr2L_8105692_8105782 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 95.45 100.00 100.00 93.33 90.91 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 83.33 83.33 92.31 100.00 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 K alternative_donor Ssadh,RI_chr3R_21451890_21451963,I_chr3R_21452371_21452464,I_chr3R_21452407_21452453 chr3R - chr3R_21452368_21452464 chr3R_21452368_21452453 chr3R_21452307_21452367;chr3R_21452465_21452553 95.45 88.89 NA NA NA NA 100.00 87.50 90.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA 100.00 80.00 87.50 NA NA 88.89 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 87.50 88.89 87.50 NA 100.00 NA NA NA 100.00 88.89 NA 90.91 NA 100.00 NA NA 88.89 77.78 NA 100.00 NA K intron_retention Gs1l,I_chr2L_4456517_4456723 chr2L - chr2L_4456333_4456385 chr2L_4456332_4456333;chr2L_4456385_4456386 chr2L_4456114_4456332;chr2L_4456386_4456516 6.93 5.13 8.82 15.62 8.82 8.33 5.22 7.53 6.54 10.00 3.12 4.44 2.70 3.39 10.20 17.65 3.12 5.45 8.11 9.38 2.17 10.00 4.49 5.94 6.25 4.48 20.25 24.00 11.34 12.07 6.60 8.82 9.43 7.06 0.00 23.91 5.51 3.61 4.51 6.57 9.57 5.43 8.89 6.98 5.88 6.80 6.85 12.87 7.37 8.93 6.74 10.00 12.20 5.00 6.12 6.93 5.26 9.86 K intron_retention CG10249,I_chr2R_10790537_10790639 chr2R - chr2R_10793459_10794529 chr2R_10793458_10793459;chr2R_10794529_10794530 chr2R_10793019_10793458;chr2R_10794530_10794722 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 14.29 NA NA NA NA NA NA NA NA 0.00 K jcn_only_AD I_chrX_15223901_15223968,HDAC6,I_chrX_15232958_15233665 chrX + chrX_15232738_15233659;chrX_15232699_15233659 chrX_15232958_15233659 chrX_15233660_15234340;chrX_15232108_15232698 72.92 86.67 82.61 34.48 84.38 78.26 NA 56.41 75.47 NA NA 83.33 NA 71.43 63.64 NA 71.43 66.67 NA 86.11 85.00 65.38 75.51 81.40 75.76 50.00 73.53 52.17 76.67 65.62 92.68 80.00 63.83 65.79 81.48 65.38 72.41 82.69 71.64 64.41 69.70 78.43 70.00 67.74 84.62 65.38 73.81 77.78 72.92 56.67 75.00 85.00 72.55 72.41 67.74 88.57 80.00 67.86 K intron_retention Shawn_Tyler,Shawn chrX + chrX_19508177_19508245 chrX_19508176_19508177;chrX_19508245_19508246 chrX_19507946_19508176;chrX_19508246_19508415 3.70 7.14 3.70 9.09 NA 5.56 3.45 11.11 2.94 0.00 NA 0.00 NA 7.14 0.00 0.00 NA 4.35 0.00 5.77 0.00 15.00 11.54 0.00 5.00 6.67 0.00 10.53 8.06 0.00 0.00 0.00 1.94 0.00 2.94 19.51 14.58 9.09 6.56 3.45 7.02 2.00 0.00 7.14 3.70 5.66 0.00 2.50 3.45 10.00 4.65 16.67 4.76 6.25 0.00 0.00 2.70 0.00 K intron_retention CG8552,I_chr2L_8140779_8156516 chr2L - chr2L_8134513_8134572 chr2L_8134512_8134513;chr2L_8134572_8134573 chr2L_8134264_8134512;chr2L_8134573_8134773 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 98.25 100.00 97.56 100.00 100.00 100.00 100.00 100.00 K cassette lqf,I_chr3L_7522287_7522807 chr3L + chr3L_7528745_7530075 chr3L_7528745_7528983;chr3L_7529536_7530075 chr3L_7528984_7529535 chr3L_7528643_7528744;chr3L_7530076_7530479 6.52 5.97 7.69 6.09 4.26 1.85 9.41 7.78 6.99 9.68 10.00 13.16 6.52 7.55 6.35 8.82 12.24 7.84 5.26 14.88 12.50 2.44 7.00 4.88 7.14 6.49 5.68 5.48 6.85 5.71 13.33 4.55 6.25 9.30 9.30 15.25 7.95 5.48 4.65 6.00 3.70 6.15 6.38 8.08 4.84 9.72 6.02 6.45 6.90 2.74 5.75 3.64 13.16 7.14 5.95 6.78 6.10 11.11 N jcn_only_AD CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806824_22807254;chr3R_22806425_22807254;chr3R_22806454_22807254 chr3R_22806725_22807254 chr3R_22807255_22807473;chr3R_22806325_22806424 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 5.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3R_6694098_6694160,Fdh chr3R - chr3R_6697908_6697976 chr3R_6697907_6697908;chr3R_6697976_6697977 chr3R_6697818_6697907;chr3R_6697977_6698058 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 1.50 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 1.19 21.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpS18,CG8908,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16152664_16152727 chr2R_16152663_16152664;chr2R_16152727_16152728 chr2R_16151998_16152663;chr2R_16152728_16152858 65.34 NA NA NA NA NA 29.41 NA 66.67 NA NA 63.64 28.57 NA NA 64.00 NA NA NA 61.54 NA 72.22 76.19 NA NA NA NA NA 53.85 NA 73.68 NA 66.67 NA NA 88.89 NA NA NA 57.14 NA 66.67 NA 63.64 NA NA NA 70.00 46.67 NA 72.73 NA NA NA NA NA NA NA K intron_retention kuz,E_chr2L_13550294_13551106,CE_chr2L_13558833_13594255,F_chr2L_13635998_13637287,RI_chr2L_13636519_13636577,I_chr2L_13636762_13637287 chr2L + chr2L_13636214_13636383 chr2L_13636213_13636214;chr2L_13636383_13636384 chr2L_13636100_13636213;chr2L_13636384_13636393 16.28 10.00 12.50 5.32 NA NA 15.56 36.84 21.15 0.00 12.50 6.70 41.67 21.74 16.67 8.62 21.43 11.11 17.65 10.09 9.52 27.91 19.51 13.16 6.45 12.50 18.52 17.65 18.00 26.87 20.83 12.50 8.25 17.39 14.71 4.60 6.82 17.39 16.67 16.28 2.86 20.69 19.05 22.22 3.03 15.00 NA 23.08 19.61 NA 27.27 7.14 5.00 NA 23.08 NA 5.26 16.67 K intron_retention KrT95D,I_chr3R_19825840_19825904 chr3R - chr3R_19824491_19824551 chr3R_19824490_19824491;chr3R_19824551_19824552 chr3R_19823890_19824490;chr3R_19824552_19824668 0.48 1.14 0.00 2.26 0.00 1.75 0.92 0.61 0.36 1.43 0.00 1.08 0.00 0.00 0.75 0.59 0.00 0.88 1.22 0.52 0.00 1.66 0.37 0.40 0.40 0.00 2.33 6.38 2.38 0.00 1.53 0.00 1.11 0.00 0.44 1.01 0.00 0.00 0.96 0.60 1.34 0.76 0.00 0.00 0.00 0.00 0.48 0.00 1.68 0.49 1.17 0.00 0.00 0.00 0.62 0.00 0.00 0.82 K alternative_donor GlcAT-P,I_chr3L_11172482_11172633 chr3L - chr3L_11172482_11172633 chr3L_11172482_11172629 chr3L_11172382_11172481;chr3L_11172634_11172733 98.28 95.83 96.23 100.00 98.00 100.00 95.74 100.00 100.00 100.00 98.36 100.00 100.00 100.00 98.77 100.00 100.00 100.00 100.00 99.16 98.21 97.87 97.67 98.00 100.00 98.15 98.08 97.67 100.00 95.65 92.98 96.97 98.21 100.00 96.67 100.00 98.81 98.11 98.39 97.10 100.00 99.17 98.00 97.14 96.55 100.00 96.30 98.41 98.32 100.00 97.92 96.43 97.73 95.65 98.53 97.50 98.28 98.25 K intron_retention CG9603,I_chr3R_4165812_4166062 chr3R - chr3R_4165812_4166149 chr3R_4165811_4165812;chr3R_4166149_4166150 chr3R_4165712_4165811;chr3R_4166150_4166162 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.21 0.49 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.22 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 1.03 0.71 0.00 0.00 0.18 0.71 0.13 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.20 0.00 0.00 0.00 K alternative_acceptor ird5,I_chr3R_11874883_11874942,CG10185 chr3R - chr3R_11874534_11874942 chr3R_11874883_11874942 chr3R_11874943_11875042;chr3R_11873964_11874533 6.06 3.45 5.26 17.14 0.00 3.23 15.00 2.56 10.20 0.00 0.00 6.67 14.29 4.76 2.17 6.06 3.45 6.67 9.09 5.77 3.57 21.43 3.92 3.03 8.33 9.09 6.90 0.00 8.33 9.52 2.94 10.53 3.45 3.77 8.33 8.70 7.14 3.33 3.12 3.92 9.09 5.80 0.00 6.25 9.09 6.67 4.76 6.38 6.45 5.00 6.67 10.34 5.56 0.00 8.82 9.68 0.00 13.04 K jcn_only_AA Spc105R chr3L + chr3L_20798960_20799024 chr3L_20798960_20799021 chr3L_20794645_20798959;chr3L_20799025_20799474 100.00 95.83 100.00 97.30 NA NA 100.00 96.30 100.00 NA NA 100.00 NA NA 95.65 96.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 NA NA 100.00 NA NA 100.00 97.83 100.00 100.00 NA NA NA 100.00 96.08 100.00 100.00 NA 100.00 98.31 97.83 100.00 100.00 100.00 100.00 NA NA 95.00 100.00 96.00 95.45 NA 97.89 K intron_retention CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2814327_2816013 chr2R_2814326_2814327;chr2R_2816013_2816014 chr2R_2814227_2814326;chr2R_2816014_2816113 7.63 6.25 10.81 6.82 17.39 3.57 16.67 6.67 7.50 9.76 16.67 10.77 12.50 15.15 10.53 13.79 5.71 8.33 6.67 7.63 10.53 12.20 10.00 10.00 17.50 10.53 11.48 15.00 8.16 9.20 6.67 5.26 7.04 9.26 6.35 9.30 6.56 3.28 10.53 7.56 8.96 3.90 13.04 6.06 4.30 6.67 4.92 8.33 7.25 7.14 7.04 7.55 6.90 4.62 6.45 10.00 5.00 4.17 K intron_retention CG1674,I_chr4_264634_265805 chr4 + chr4_266168_266232 chr4_266167_266168;chr4_266232_266233 chr4_266030_266167;chr4_266233_266266 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.13 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention l(1)G0334 chrX + chrX_4598551_4598620 chrX_4598550_4598551;chrX_4598620_4598621 chrX_4598228_4598550;chrX_4598621_4599146 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention CG42574,I_chr3R_618802_618939,I_chr3R_621543_625413,I_chr3R_621546_625413 chr3R - chr3R_620787_622210 chr3R_620786_620787;chr3R_622210_622211 chr3R_618940_620786;chr3R_622211_622332 48.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA 47.37 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG33558,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2816779_2817354;chr2R_2816779_2817327 chr2R_2816779_2817459 chr2R_2816679_2816778;chr2R_2817460_2817510 0.00 2.27 0.00 0.00 0.00 6.25 0.00 3.70 1.54 2.70 0.00 1.67 0.00 0.00 2.86 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 2.08 8.33 2.86 0.00 0.00 3.23 1.56 0.00 2.33 2.22 1.80 0.00 0.00 0.00 2.70 1.67 0.00 2.17 0.00 1.52 2.70 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 K alternative_donor CSN8,I_chr2L_8365282_8365388,I_chr2L_8367210_8367311 chr2L + chr2L_8365282_8365388 chr2L_8365329_8365388 chr2L_8365389_8365488;chr2L_8365182_8365281 100.00 100.00 97.56 98.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.55 100.00 100.00 100.00 98.39 100.00 100.00 97.78 97.83 100.00 100.00 98.08 98.18 100.00 87.10 100.00 100.00 96.15 100.00 97.62 100.00 97.73 100.00 100.00 96.00 98.15 100.00 100.00 100.00 97.06 100.00 100.00 98.08 100.00 100.00 100.00 96.97 98.57 100.00 100.00 97.37 96.77 100.00 100.00 98.33 98.80 98.57 K alternative_donor stck,I_chr3R_4184313_4184380,I_chr3R_4184660_4184730 chr3R + chr3R_4182496_4184192;chr3R_4182818_4184192 chr3R_4183179_4184192 chr3R_4184193_4184312;chr3R_4182427_4182495 50.00 42.86 55.56 50.00 33.33 50.00 38.46 50.00 47.83 33.33 42.86 56.25 40.00 50.00 37.50 50.00 28.57 66.67 62.50 66.67 50.00 62.50 60.00 44.44 50.00 44.44 57.14 60.00 66.67 66.67 66.67 66.67 75.00 46.67 50.00 75.00 40.00 33.33 44.44 62.50 75.00 42.11 50.00 66.67 80.00 42.86 50.00 75.00 41.18 40.00 55.56 28.57 60.00 60.00 36.36 40.00 40.00 66.67 K intron_retention CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157014_157316,RI_chr4_157014_157504,I_chr4_157794_157864 chr4 + chr4_156998_157316 chr4_156997_156998;chr4_157316_157317 chr4_156984_156997;chr4_157317_157403 88.89 NA NA 68.75 NA NA 92.86 88.24 77.27 NA NA 100.00 NA NA NA 90.91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA 81.25 NA NA NA NA NA NA 91.67 NA NA NA NA NA NA NA NA NA K jcn_only_AD nes chr3L - chr3L_19253331_19253632;chr3L_19253331_19253636;chr3L_19253331_19253609;chr3L_19253331_19253676;chr3L_19253331_19253648;chr3L_19253331_19253745 chr3L_19253331_19253764 chr3L_19253215_19253330;chr3L_19253765_19253779 0.00 0.00 0.00 2.33 0.00 0.00 1.82 1.92 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.08 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 2.67 NA 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 K alternative_donor CG13771 chr2L - chr2L_6663068_6663123;chr2L_6663068_6663131 chr2L_6663068_6663127 chr2L_6662854_6663067;chr2L_6663132_6663374 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA 22.22 NA NA NA NA NA 12.50 NA 13.33 NA NA NA NA NA NA NA NA NA 33.33 K alternative_donor Chc,RI_chrX_15728405_15729273,I_chrX_15728405_15729401,I_chrX_15728946_15729357 chrX - chrX_15728405_15729260;chrX_15728405_15729370;chrX_15728405_15729476;chrX_15728405_15729357 chrX_15728405_15729319 chrX_15728305_15728404;chrX_15729477_15729501 9.45 10.87 10.61 12.50 13.79 12.50 9.49 8.07 8.86 12.50 8.57 6.15 7.59 10.39 8.33 8.93 6.06 10.87 10.75 9.45 10.87 6.00 9.23 7.32 10.00 9.84 11.90 9.38 16.67 5.88 7.78 15.38 7.41 8.44 11.11 15.56 7.69 15.79 3.57 12.90 0.00 8.70 7.04 10.00 0.00 8.70 3.85 12.12 8.02 15.79 14.29 12.50 16.67 21.43 8.00 8.70 4.35 13.33 K jcn_only_AA Fps85D,I_chr3R_5194729_5194776,I_chr3R_5216796_5218450 chr3R - chr3R_5216796_5218462 chr3R_5216814_5218462 chr3R_5218463_5218550;chr3R_5216696_5216795 2.54 2.56 2.41 0.00 1.54 2.53 1.12 1.87 3.40 0.00 2.33 0.00 1.54 7.41 3.70 2.47 7.32 2.63 1.19 3.89 4.62 4.27 3.87 0.91 1.39 0.00 3.41 6.45 1.06 1.28 0.00 0.00 3.75 4.64 1.61 5.88 1.37 4.76 2.54 3.45 0.00 1.38 3.03 3.38 4.26 3.28 0.00 3.08 5.06 2.67 4.17 4.44 0.00 1.85 4.17 3.12 0.00 0.00 K intron_retention MED14,CG12030 chr3L + chr3L_596632_596687 chr3L_596631_596632;chr3L_596687_596688 chr3L_596327_596631;chr3L_596688_599242 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 5.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K alternative_donor plx chr3R + chr3R_1528494_1532905 chr3R_1528650_1532905 chr3R_1532906_1533663;chr3R_1528447_1528493 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention cnn,I_chr2R_9333096_9336723,I_chr2R_9333096_9336812,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9334834_9336719 chr2R_9334833_9334834;chr2R_9336719_9336720 chr2R_9334744_9334833;chr2R_9336720_9336819 90.62 92.31 100.00 80.00 NA NA 90.48 90.00 90.62 100.00 NA 81.82 87.50 NA 87.50 94.74 NA NA 91.67 84.62 77.78 83.33 95.45 90.91 90.00 88.89 91.67 91.67 95.24 90.91 100.00 100.00 91.30 90.91 NA 75.00 93.75 NA 100.00 91.30 88.89 90.00 NA 89.47 NA 84.62 NA 95.65 90.00 87.50 100.00 NA NA NA 90.00 NA NA 75.00 K intron_retention CG17838 chr3R + chr3R_16605060_16606429 chr3R_16605059_16605060;chr3R_16606429_16606430 chr3R_16604991_16605059;chr3R_16606430_16606549 100.00 NA NA 93.75 NA NA 100.00 100.00 95.24 NA NA 94.12 100.00 NA NA 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K cassette ens,I_chr3L_4130719_4131120 chr3L - chr3L_4132204_4133768;chr3L_4132213_4133768 chr3L_4132204_4133548,chr3L_4132213_4133548;chr3L_4133657_4133768 chr3L_4133549_4133656 chr3L_4131956_4132203;chr3L_4133769_4133822 2.34 2.56 3.12 0.00 2.50 2.13 1.47 3.03 1.76 1.92 1.43 2.34 3.23 2.13 4.17 3.51 1.75 2.70 1.75 2.05 3.66 4.83 1.89 3.03 4.55 3.66 1.64 2.40 5.10 1.71 1.27 5.71 1.15 2.27 4.44 1.94 1.08 1.16 2.63 2.34 3.77 2.58 3.92 2.60 3.28 2.08 0.94 1.98 3.67 1.47 2.25 5.88 0.00 1.41 2.35 3.23 0.00 1.54 K alternative_donor I_chr3R_8822346_8822403,CG7518 chr3R + chr3R_8827698_8828350 chr3R_8828286_8828350 chr3R_8828351_8828431;chr3R_8827671_8827697 0.00 0.00 0.00 4.88 0.00 NA 7.41 2.63 2.04 NA 11.11 4.35 10.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 NA 8.33 0.00 4.35 NA 0.00 3.33 12.50 NA NA 4.76 0.00 0.00 6.67 NA NA 0.00 0.00 0.00 2.63 NA 0.00 0.00 2.78 NA NA 0.00 NA 2.94 0.00 0.00 0.00 NA NA 0.00 0.00 6.25 9.09 K cassette CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2439831_2459590 chr3L_2439831_2444498;chr3L_2446102_2459590 chr3L_2444499_2446101 chr3L_2439731_2439830;chr3L_2459591_2459690 100.00 98.73 98.53 99.17 100.00 100.00 100.00 100.00 99.30 98.77 100.00 99.15 100.00 100.00 100.00 100.00 100.00 98.41 98.41 99.23 100.00 98.49 100.00 99.21 100.00 100.00 99.25 100.00 99.26 99.10 100.00 98.39 99.29 100.00 98.81 100.00 99.39 98.94 100.00 99.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.07 99.15 99.23 100.00 98.63 100.00 98.48 98.73 98.88 100.00 100.00 K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27761114_27762991,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27707594_27801169 chr3R_27707594_27757793;chr3R_27758337_27784756;chr3R_27784850_27795477;chr3R_27795508_27798223;chr3R_27798276_27801169 chr3R_27757794_27758336;chr3R_27784757_27784849;chr3R_27795478_27795507;chr3R_27798224_27798275 chr3R_27707494_27707593;chr3R_27801170_27801219 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 66.67 50.00 NA 100.00 100.00 NA NA 100.00 75.00 NA 66.67 NA 100.00 100.00 66.67 NA NA 50.00 100.00 NA NA 66.67 100.00 NA NA 100.00 100.00 100.00 100.00 NA 66.67 NA 66.67 100.00 NA NA 100.00 60.00 100.00 100.00 NA 100.00 NA 66.67 NA 100.00 66.67 K alternative_donor Srp68 chr3L + chr3L_8968321_8968424 chr3L_8968355_8968424 chr3L_8968425_8968774;chr3L_8968194_8968320 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 1.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.79 K jcn_only_AD MED22,I_chrX_822500_822582,noncoding_21259,I_chrX_829743_831973 chrX + chrX_822500_822582 chrX_822519_822582 chrX_822583_822649;chrX_822435_822499 100.00 100.00 97.37 100.00 97.92 100.00 100.00 100.00 98.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 NA 100.00 100.00 100.00 97.56 100.00 100.00 100.00 98.04 100.00 100.00 88.57 100.00 100.00 100.00 98.61 98.25 100.00 100.00 100.00 98.57 100.00 100.00 97.22 100.00 100.00 100.00 98.36 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG8031 chr3R - chr3R_8835038_8835103 chr3R_8835037_8835038;chr3R_8835103_8835104 chr3R_8834926_8835037;chr3R_8835104_8835216 0.00 0.00 0.00 1.82 0.00 0.00 0.00 1.48 1.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 4.05 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor scrib,I_chr3R_22362324_22363015,I_chr3R_22381374_22399575,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22362244_22363092;chr3R_22362120_22363092;chr3R_22362315_22363092;chr3R_22362254_22363092;chr3R_22362224_22363092;chr3R_22362324_22363092 chr3R_22362142_22363092 chr3R_22363093_22363115;chr3R_22362112_22362119 4.76 3.57 5.77 6.76 10.00 7.14 6.15 4.23 6.36 0.00 7.50 5.56 5.41 7.14 4.76 1.59 7.89 5.41 0.00 5.43 6.98 2.59 1.96 5.56 10.00 5.88 0.00 5.26 5.66 1.27 4.76 0.00 6.06 2.82 2.38 4.55 7.89 9.09 7.69 1.85 4.88 2.53 0.00 2.63 5.56 7.32 4.55 3.30 7.25 0.00 2.17 0.00 0.00 0.00 9.80 0.00 0.00 4.48 K intron_retention CG34409,CG12948 chr3R - chr3R_5569737_5570402 chr3R_5569736_5569737;chr3R_5570402_5570403 chr3R_5569634_5569736;chr3R_5570403_5571167 5.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA RhoGAP5A,C_chrX_5514320_5515557 chrX - chrX_5511062_5511153 chrX_5511090_5511153 chrX_5511154_5511259;chrX_5510684_5511061 100.00 98.11 100.00 100.00 100.00 97.14 100.00 100.00 97.10 100.00 100.00 100.00 NA NA 100.00 92.31 100.00 100.00 100.00 98.65 100.00 97.83 98.99 98.25 96.77 100.00 98.72 98.15 97.83 98.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.81 100.00 100.00 100.00 98.18 98.04 99.00 96.59 100.00 100.00 100.00 98.61 100.00 100.00 97.85 97.14 98.94 98.15 98.55 K intron_retention I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,I_chr3R_17190098_17190207,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17190098_17200781 chr3R_17190097_17190098;chr3R_17200781_17200782 chr3R_17189998_17190097;chr3R_17200782_17200881 21.50 NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA 26.32 NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA 14.29 16.67 NA 41.67 NA NA NA NA 30.77 NA NA NA 35.71 NA NA NA NA NA NA NA N jcn_only_AD Lag1,RI_chrX_6153758_6153930,I_chrX_6153758_6155077,RI_chrX_6153758_6161036,I_chrX_6160907_6161036 chrX - chrX_6153758_6155077;chrX_6153758_6154631;chrX_6153758_6153930;chrX_6153758_6161036;chrX_6153758_6154358;chrX_6153758_6160439 chrX_6153758_6154193 chrX_6153658_6153757;chrX_6161037_6161136 2.18 0.00 3.17 2.29 0.00 3.23 3.63 2.18 1.63 3.00 1.89 3.74 0.00 0.00 3.25 2.06 0.00 3.42 0.00 1.66 2.63 4.95 1.54 1.41 0.00 0.00 0.00 3.30 5.54 1.93 2.76 0.00 6.30 2.28 0.00 2.48 2.20 0.00 2.31 1.97 0.00 3.10 0.00 0.00 4.93 4.30 0.00 0.00 2.32 3.18 2.62 3.15 0.00 2.97 2.26 0.00 2.21 0.00 K alternative_donor drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9390195;chr2R_9389597_9390151;chr2R_9389597_9389907;chr2R_9389597_9389940;chr2R_9389597_9390293;chr2R_9389597_9390264;chr2R_9389597_9389753;chr2R_9389597_9389757 chr2R_9389597_9389751 chr2R_9389497_9389596;chr2R_9390294_9390295 5.71 5.26 4.88 5.08 4.17 6.67 5.56 6.45 3.61 6.67 3.12 5.00 6.67 7.41 5.71 7.69 3.85 2.86 5.13 1.96 3.23 13.04 8.57 8.33 4.35 2.70 9.52 13.33 6.25 11.11 5.00 6.67 8.33 9.84 5.56 3.85 4.76 7.69 8.70 7.89 11.11 4.11 5.26 5.56 7.14 11.11 5.26 12.00 7.58 6.25 4.76 8.33 4.76 0.00 5.13 5.88 3.12 8.33 K alternative_acceptor shep,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5155644_5156066;chr3L_5155711_5156066 chr3L_5155732_5156066 chr3L_5156067_5156229;chr3L_5155556_5155643 4.03 4.50 3.95 10.04 4.42 3.95 3.91 3.70 4.88 4.20 2.82 3.62 7.63 3.52 3.49 3.64 5.43 3.45 4.14 4.08 4.08 3.48 5.52 5.88 6.86 6.35 1.71 1.83 5.32 5.20 3.98 4.73 3.22 6.08 4.03 7.51 4.40 2.91 2.31 3.11 6.56 3.75 2.50 2.25 3.39 3.24 4.07 3.90 3.91 5.48 5.26 3.80 4.46 1.41 4.08 5.56 5.88 2.78 K jcn_only_AA Pitslre,I_chr3L_20764965_20765781,I_chr3L_20764965_20766192,I_chr3L_20764965_20766212,I_chr3L_20766064_20766192,I_chr3L_20766064_20766215,RI_chr3L_20766064_20766893,I_chr3L_20766311_20766664,I_chr3L_20766311_20766893,I_chr3L_20766773_20766893 chr3L + chr3L_20764965_20765704;chr3L_20764965_20766215 chr3L_20764965_20766893 chr3L_20764896_20764964;chr3L_20766894_20766993 64.18 71.88 NA NA NA NA NA 77.27 50.91 82.14 NA 55.88 NA NA NA 65.22 NA NA NA 67.65 NA 48.65 51.52 71.19 59.52 NA 61.70 75.64 61.36 69.23 22.58 51.85 62.00 NA 73.53 78.79 70.73 64.18 60.29 64.10 63.64 73.81 NA 46.81 71.88 75.00 73.53 83.33 78.12 71.79 59.15 51.35 71.88 62.96 50.00 57.14 71.43 59.09 K jcn_only_AD CG12576,RI_chrX_21878289_21882347,I_chrX_21882735_21882809,I_chrX_21882735_21883407,I_chrX_21882735_21883467,I_chrX_21882735_21883620,I_chrX_21882735_21883714 chrX - chrX_21882735_21883714;chrX_21882735_21883467;chrX_21882735_21883750 chrX_21882735_21882809 chrX_21882635_21882734;chrX_21883751_21883814 0.78 3.41 1.45 1.32 0.00 3.08 1.03 2.20 0.89 0.00 0.00 0.77 0.00 1.14 1.23 1.59 0.00 6.85 1.01 0.84 2.47 0.78 1.72 1.52 0.00 2.78 0.00 0.00 0.00 0.00 3.23 1.49 0.00 0.68 1.14 0.00 0.00 0.00 2.47 0.00 0.00 0.72 1.41 1.68 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 2.27 2.04 1.30 2.99 0.00 K intron_retention Arf79F,I_chr3L_22863166_22863946,I_chr3L_22863166_22864419,RI_chr3L_22863251_22863389,RI_chr3L_22863251_22863952,I_chr3L_22863251_22864009,I_chr3L_22863251_22864188,I_chr3L_22863251_22864501,I_chr3L_22863251_22864629,RI_chr3L_22863251_22864763,I_chr3L_22863251_22864866,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22863251_22863952 chr3L_22863250_22863251;chr3L_22863952_22863953 chr3L_22863151_22863250;chr3L_22863953_22864046 60.00 NA 77.78 60.00 NA NA NA 77.78 50.00 NA NA 50.00 NA NA 77.78 NA NA NA 63.64 NA NA NA 41.67 NA NA NA 60.00 NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA 27.27 NA NA NA NA 46.15 NA NA NA 58.33 NA NA NA NA NA NA NA N alternative_donor RpS27A,Ip259 chr2L + chr2L_10408387_10408738 chr2L_10408622_10408738 chr2L_10408739_10409132;chr2L_10408376_10408386 10.68 10.68 5.13 10.94 7.14 5.06 12.77 5.13 6.90 41.67 3.08 3.82 9.36 6.02 3.04 12.18 4.79 2.53 5.32 4.84 4.50 14.71 28.79 11.61 7.34 1.42 40.00 57.89 22.47 34.62 6.00 9.52 10.87 5.14 52.63 50.00 6.35 16.33 4.92 16.00 35.48 3.64 5.76 15.15 2.84 40.62 15.74 23.81 6.05 16.67 42.22 7.69 16.90 37.04 2.58 11.21 18.40 22.62 K alternative_donor dlg1,I_chrX_11298230_11299306 chrX + chrX_11283731_11284263 chrX_11283815_11284263 chrX_11284264_11284573;chrX_11283729_11283730 88.89 85.71 88.89 95.24 85.71 83.33 100.00 95.24 95.00 NA 87.50 85.71 88.89 90.00 86.67 95.65 92.86 75.00 82.35 88.24 87.50 90.91 87.50 88.89 100.00 73.33 77.78 100.00 94.74 100.00 88.24 85.71 95.65 90.91 88.24 93.75 83.33 NA NA 94.44 90.00 88.89 88.89 90.91 NA 92.31 83.33 97.56 80.00 NA 80.00 88.89 75.00 NA 93.75 NA NA 92.31 K alternative_acceptor Su(var)2-10,I_chr2R_5005955_5006020,RI_chr2R_5006333_5006392 chr2R + chr2R_5005955_5006020 chr2R_5005955_5006010 chr2R_5005855_5005954;chr2R_5006021_5006120 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 95.65 96.15 100.00 100.00 100.00 97.67 100.00 100.00 97.30 97.37 100.00 100.00 100.00 98.46 98.39 96.88 100.00 100.00 100.00 100.00 96.77 96.55 100.00 100.00 100.00 96.55 96.97 98.53 100.00 100.00 98.04 100.00 100.00 96.67 100.00 100.00 100.00 97.73 100.00 100.00 100.00 98.33 100.00 100.00 100.00 100.00 100.00 97.83 100.00 K alternative_donor olf186-F chr2R + chr2R_13731470_13738562 chr2R_13738402_13738562 chr2R_13738563_13738965;chr2R_13731438_13731469 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA UbcD6,RI_chr3R_776749_776832 chr3R - chr3R_776475_776832 chr3R_776749_776832 chr3R_776833_776932;chr3R_776189_776474 82.14 NA NA NA NA NA NA 85.71 91.67 NA NA 70.00 NA NA NA NA NA NA NA NA NA NA 66.67 79.17 NA NA NA NA 65.00 NA NA NA NA 82.14 NA NA NA NA NA 84.00 NA 84.38 NA 57.14 NA 95.24 NA NA 81.82 83.87 68.97 NA NA NA NA NA 90.00 NA K intron_retention babo chr2R + chr2R_4842357_4842463 chr2R_4842356_4842357;chr2R_4842463_4842464 chr2R_4842239_4842356;chr2R_4842464_4842672 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA 100.00 NA NA NA 91.67 100.00 NA NA 91.67 NA NA 100.00 NA NA 100.00 100.00 NA NA NA NA NA NA 92.31 NA NA NA NA NA NA NA 92.86 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG13551,I_chr2R_19265701_19270570 chr2R - chr2R_19270646_19270887 chr2R_19270646_19270842 chr2R_19270612_19270645;chr2R_19270888_19270938 14.66 10.61 13.30 17.55 8.87 11.50 12.73 14.85 8.94 8.89 7.41 13.55 12.78 14.46 11.90 11.44 7.37 15.42 11.74 17.53 8.71 28.12 34.83 34.33 27.59 13.51 36.11 NA 21.88 42.86 12.00 15.28 9.80 8.17 25.71 26.83 24.64 10.47 21.92 43.56 20.00 14.36 9.45 21.74 15.93 25.00 35.71 8.11 8.05 22.35 30.00 25.45 24.77 29.35 10.18 13.29 18.64 8.26 K alternative_donor Imp,I_chrX_10699490_10700695,RI_chrX_10699665_10700501,RI_chrX_10699665_10700695 chrX - chrX_10699503_10700501;chrX_10699503_10700695 chrX_10699503_10700474 chrX_10699299_10699502;chrX_10700696_10700795 10.82 0.00 0.00 10.53 0.00 12.50 15.79 13.79 9.68 NA 0.00 13.04 10.00 6.67 0.00 12.00 0.00 0.00 14.29 11.11 33.33 NA 12.50 NA NA 20.00 20.00 NA NA NA 22.22 NA NA 8.33 NA NA NA NA NA 0.00 NA 6.67 7.69 NA NA NA NA 25.00 13.04 NA NA NA NA NA 14.29 NA NA NA K alternative_donor Eno,EI_chr2L_1727403_1727645,I_chr2L_1728229_1728302 chr2L - chr2L_1728233_1728361 chr2L_1728233_1728302 chr2L_1728054_1728232;chr2L_1728362_1728402 88.89 92.31 88.89 61.11 NA 87.50 76.92 85.71 86.67 NA 62.50 96.15 NA 88.89 100.00 81.82 NA NA 100.00 85.71 NA NA 90.00 84.62 NA NA NA NA 100.00 100.00 93.75 62.50 88.89 95.00 75.00 NA 87.50 100.00 87.50 85.71 NA 93.75 88.89 84.62 90.91 100.00 75.00 88.89 94.44 100.00 100.00 100.00 85.71 88.89 90.00 100.00 80.00 100.00 K alternative_donor I_chrX_16266436_16268958,Fur2,I_chrX_16267221_16268573,I_chrX_16267868_16268958,RI_chrX_16267905_16268958,I_chrX_16270205_16270272,I_chrX_16274795_16274867 chrX + chrX_16267208_16268958 chrX_16267221_16268958 chrX_16268959_16269058;chrX_16267150_16267207 69.10 78.57 62.50 61.11 72.73 63.64 61.54 58.33 60.98 83.33 66.67 66.67 62.50 58.82 61.54 74.07 68.42 70.00 77.78 68.57 76.92 62.86 68.97 75.00 66.67 63.64 57.14 71.43 72.73 77.78 68.75 NA 80.00 60.71 53.33 75.00 68.18 69.23 75.00 88.46 70.00 70.83 87.50 74.07 NA 77.78 87.50 85.71 66.67 63.64 72.00 56.25 75.00 NA 66.67 90.00 54.55 93.33 K jcn_only_AA tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563461_565293 chr3R_563503_565293 chr3R_565294_565301;chr3R_563195_563460 42.42 NA NA 72.73 NA NA 11.76 NA 46.58 NA NA NA NA NA NA 54.55 NA NA 23.81 22.22 NA NA NA 34.78 NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA 42.42 NA NA NA NA 38.10 NA 43.33 NA NA NA NA NA 71.43 NA 20.00 NA K cassette CG17698 chr3L + chr3L_23741161_23741523 chr3L_23741161_23741239;chr3L_23741393_23741523 chr3L_23741240_23741392 chr3L_23741051_23741160;chr3L_23741524_23741816 100.00 100.00 100.00 97.30 100.00 100.00 97.30 96.30 96.00 100.00 100.00 97.62 100.00 100.00 96.30 97.44 100.00 100.00 100.00 97.62 100.00 100.00 95.00 100.00 100.00 73.68 94.44 NA 85.71 100.00 100.00 100.00 100.00 100.00 100.00 76.92 100.00 90.00 100.00 100.00 100.00 100.00 96.30 100.00 88.89 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Sec61alpha chr2L - chr2L_6480102_6480323 chr2L_6480101_6480102;chr2L_6480323_6480324 chr2L_6480034_6480101;chr2L_6480324_6480490 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette Asator chr4 - chr4_495395_497917 chr4_495395_495585;chr4_495731_497588;chr4_497729_497917 chr4_495586_495730;chr4_497589_497728 chr4_495385_495394;chr4_497918_497940 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD bl,I_chr2R_16481586_16483061,mir-7 chr2R + chr2R_16493357_16493948 chr2R_16493382_16493948 chr2R_16493949_16494359;chr2R_16493187_16493356 2.63 2.21 1.96 2.97 2.10 2.55 1.65 4.76 2.22 2.15 4.63 2.82 0.89 1.18 3.63 4.32 4.23 1.74 4.07 3.40 3.97 1.54 3.49 4.29 2.55 2.70 2.93 4.21 5.76 1.34 2.23 2.92 2.19 3.11 1.23 3.59 4.92 1.73 2.26 0.83 2.63 2.67 2.36 4.17 2.66 2.27 3.94 2.23 2.24 4.25 2.67 1.81 1.94 3.59 2.26 1.69 2.81 1.77 K jcn_only_AD LanB1,RI_chr2L_7820401_7820448,RI_chr2L_7820405_7820461 chr2L + chr2L_7820401_7820461 chr2L_7820405_7820461 chr2L_7820462_7820548;chr2L_7820305_7820400 1.70 1.05 2.67 2.21 1.77 1.86 1.36 1.77 1.25 1.49 1.03 1.56 1.94 1.70 2.87 1.48 1.39 1.72 1.65 1.90 1.55 1.59 2.42 2.82 1.31 2.00 3.04 0.74 2.69 1.01 1.64 1.75 1.39 1.49 1.16 1.64 2.28 2.04 1.37 1.72 1.93 2.06 1.86 1.58 2.36 1.32 2.66 1.20 1.81 2.21 2.09 1.91 1.87 1.60 1.66 1.43 1.54 1.60 K intron_retention CG5706 chr3R - chr3R_20077801_20077866 chr3R_20077800_20077801;chr3R_20077866_20077867 chr3R_20076455_20077800;chr3R_20077867_20078024 0.00 2.86 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 3.85 6.25 0.00 0.00 3.45 9.09 0.00 10.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 2.04 1.69 4.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG15107,I_chr2R_14859289_14859333 chr2R - chr2R_14859289_14859333;chr2R_14859269_14859333 chr2R_14859281_14859333 chr2R_14859334_14859398;chr2R_14859203_14859268 68.05 65.62 61.90 69.35 68.97 65.85 64.15 62.16 70.51 NA 67.74 61.33 70.00 78.38 53.33 74.36 55.26 68.18 68.00 66.19 65.00 67.39 75.47 68.09 66.67 71.64 65.85 75.76 70.00 77.05 63.46 67.78 77.27 65.08 48.78 69.09 69.57 75.86 64.15 76.42 76.25 68.82 72.34 66.67 72.94 60.75 64.58 64.76 73.26 74.07 60.98 55.17 65.00 68.75 73.21 61.11 70.97 74.48 K intron_retention Smg6 chr3R - chr3R_20857217_20857272 chr3R_20857216_20857217;chr3R_20857272_20857273 chr3R_20857081_20857216;chr3R_20857273_20857415 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 6.25 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA K intron_retention deltaCOP,I_chrX_1754047_1754089,I_chrX_1755132_1755191,E_chrX_1755139_1755188,I_chrX_1757755_1757801 chrX - chrX_1755708_1755795 chrX_1755707_1755708;chrX_1755795_1755796 chrX_1755628_1755707;chrX_1755796_1755831 99.50 99.32 99.28 99.30 100.00 99.04 100.00 99.40 99.68 100.00 100.00 97.92 99.10 100.00 99.29 99.42 98.02 100.00 99.11 99.63 99.17 99.08 100.00 99.45 100.00 99.04 99.43 99.31 99.38 100.00 99.25 100.00 99.70 99.42 100.00 100.00 99.57 100.00 99.54 100.00 100.00 99.15 97.67 100.00 99.35 100.00 100.00 98.80 99.06 99.38 100.00 100.00 100.00 100.00 99.29 100.00 99.50 99.48 K intron_retention I_chr2L_100704_100835,CG11377 chr2L + chr2L_103435_103877 chr2L_103434_103435;chr2L_103877_103878 chr2L_103006_103434;chr2L_103878_104103 40.38 25.00 38.10 40.43 31.03 40.91 53.70 34.43 39.02 40.00 24.32 33.87 50.00 60.00 37.50 57.50 56.52 52.94 51.35 40.38 29.17 13.33 44.44 41.46 69.23 61.11 26.83 16.18 47.37 31.58 40.00 25.00 22.22 50.00 41.38 36.84 29.03 33.33 20.00 38.64 26.67 48.15 59.09 55.00 16.67 51.52 42.86 23.33 41.67 29.55 35.48 47.83 55.00 39.29 43.33 42.86 41.18 46.34 K cassette MRP,I_chr2L_12727117_12729243,F_chr2L_12727117_12736035 chr2L + chr2L_12727117_12737958 chr2L_12727117_12728577;chr2L_12728799_12737958 chr2L_12728578_12728798 chr2L_12727017_12727116;chr2L_12737959_12738176 11.54 12.20 16.67 21.43 10.00 26.32 21.67 24.44 24.56 8.33 18.18 42.00 28.00 26.32 16.67 17.65 11.54 15.38 17.86 47.62 20.83 2.05 12.59 9.28 11.94 17.24 9.30 4.11 2.73 8.86 9.26 5.71 4.40 19.15 12.96 10.64 12.90 6.25 7.14 10.28 2.94 25.00 16.00 5.00 4.55 5.00 7.14 6.45 22.50 2.15 7.91 11.90 8.82 3.92 20.00 3.03 5.00 3.45 K jcn_only_AA Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654157,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15652351_15654157 chrX_15652363_15654157 chrX_15654158_15654174;chrX_15652263_15652350 40.91 NA NA 40.91 NA NA 9.52 NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD rin,I_chr3R_9476825_9476895 chr3R + chr3R_9472923_9474639 chr3R_9473269_9474639 chr3R_9474640_9476216;chr3R_9472709_9472922 50.90 56.13 50.00 24.40 38.16 55.06 56.70 65.13 46.46 56.36 43.23 62.03 59.56 50.56 52.94 59.95 48.89 27.86 50.95 58.47 56.59 64.41 54.11 44.85 39.45 50.84 39.39 26.89 41.89 37.70 58.08 59.18 41.88 56.48 56.45 40.52 46.00 42.52 35.14 58.08 56.36 48.56 62.11 43.09 43.55 NA 46.46 59.46 55.42 45.83 53.47 55.34 35.29 49.06 55.00 57.89 47.95 62.71 K intron_retention bowl,RI_chr2L_3772695_3773616 chr2L + chr2L_3780580_3781903 chr2L_3780579_3780580;chr2L_3781903_3781904 chr2L_3779698_3780579;chr2L_3781904_3784109 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 2.17 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.90 0.00 NA 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AD Pi3K92E,I_chr3R_16459436_16459551,I_chr3R_16459436_16459848 chr3R - chr3R_16459436_16459848;chr3R_16459436_16460267;chr3R_16459436_16460340;chr3R_16459436_16459551 chr3R_16459436_16460287 chr3R_16459336_16459435;chr3R_16460341_16460435 3.12 2.70 6.25 5.63 12.00 3.45 1.64 5.88 0.00 0.00 4.76 1.19 0.00 3.39 7.27 4.00 5.00 2.78 0.00 3.17 4.17 3.45 2.90 2.17 0.00 2.22 2.17 3.57 4.76 0.00 0.00 NA 2.78 3.45 0.00 0.00 0.00 3.12 5.56 3.37 10.00 1.41 3.23 1.39 NA 0.00 4.35 2.94 1.19 NA 0.00 9.09 NA NA 3.92 13.64 4.00 NA K intron_retention par-6 chrX + chrX_17598634_17598700 chrX_17598633_17598634;chrX_17598700_17598701 chrX_17598405_17598633;chrX_17598701_17601129 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 2.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Acf1,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27625096_27625160 chr3R_27625095_27625096;chr3R_27625160_27625161 chr3R_27624657_27625095;chr3R_27625161_27625529 2.78 1.59 0.00 7.41 6.67 4.35 5.26 5.00 2.22 10.00 0.00 5.15 6.52 5.13 0.00 2.27 0.00 3.12 3.57 2.80 0.00 0.00 0.00 2.78 6.98 5.56 5.48 0.00 9.09 0.00 0.00 1.75 10.00 7.69 0.00 0.00 2.33 5.26 0.00 3.45 2.94 6.12 2.94 0.00 2.13 2.53 3.75 5.71 4.88 6.02 0.00 0.00 0.00 0.00 5.56 1.69 0.00 0.00 K intron_retention CG2767 chr3R - chr3R_3832499_3832558 chr3R_3832498_3832499;chr3R_3832558_3832559 chr3R_3831939_3832498;chr3R_3832559_3832685 0.00 0.00 0.00 2.38 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.63 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 4.44 3.85 1.92 0.00 0.00 2.44 0.00 0.00 0.00 4.84 0.00 0.00 3.30 1.32 0.00 0.00 0.00 0.00 2.22 1.35 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 K intron_retention CG12946,noncoding_15730,I_chr3R_5599701_5600032,I_chr3R_5609682_5609889 chr3R - chr3R_5599701_5600032 chr3R_5599700_5599701;chr3R_5600032_5600033 chr3R_5599601_5599700;chr3R_5600033_5600132 94.12 100.00 NA 100.00 NA 100.00 90.00 100.00 88.89 NA NA 90.00 100.00 NA 91.67 100.00 NA 100.00 NA 94.12 100.00 NA 90.00 88.89 NA 100.00 93.75 NA 88.89 91.67 100.00 NA 100.00 90.91 NA 100.00 100.00 NA 84.62 93.75 NA 88.24 NA 100.00 NA NA NA 90.91 94.12 NA 91.67 NA NA NA 90.00 NA NA 100.00 K cassette ens,I_chr3L_4130719_4131120 chr3L - chr3L_4127163_4131120;chr3L_4127163_4129650 chr3L_4127163_4128613;chr3L_4128974_4131120,chr3L_4128974_4129650 chr3L_4128614_4128973 chr3L_4126989_4127162;chr3L_4131121_4131220 11.49 11.32 15.00 3.70 11.29 16.22 10.23 5.21 13.11 5.63 5.06 32.58 5.56 8.57 11.36 18.18 8.96 26.37 8.57 26.11 13.33 4.46 17.18 15.08 8.74 4.49 10.28 9.71 21.90 12.98 8.08 10.17 13.37 10.28 9.52 5.22 14.36 10.49 11.49 12.24 14.93 12.43 11.43 8.77 20.16 13.64 17.07 16.79 12.95 14.49 10.00 8.51 15.79 12.90 13.51 7.29 18.00 21.25 K alternative_last_exon fz,CG13482 chr3L + chr3L_14310438_14359847 chr3L_14310438_14325073 chr3L_14359848_14361814 chr3L_14325074_14326977 chr3L_14310419_14310437 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA K jcn_only_AD CG34394,I_chr2L_3365674_3365965 chr2L - chr2L_3367720_3367903 chr2L_3367720_3367850 chr2L_3367245_3367719;chr2L_3367904_3368056 0.00 0.00 1.08 2.86 1.96 0.00 2.47 3.61 1.69 0.00 0.00 1.80 0.00 0.00 1.23 0.00 1.67 1.75 1.82 0.89 1.64 0.00 1.33 1.49 0.00 0.00 0.00 4.29 20.63 2.94 0.00 0.00 1.22 0.00 3.85 0.00 0.88 0.00 0.00 0.00 2.38 0.74 0.00 0.00 0.00 0.00 0.00 2.67 0.00 0.00 1.75 0.00 0.00 0.00 1.64 3.77 0.00 0.00 K intron_retention HmgD,I_chr2R_17601672_17603325,I_chr2R_17603119_17603196 chr2R + chr2R_17603123_17603196 chr2R_17603122_17603123;chr2R_17603196_17603197 chr2R_17602911_17603122;chr2R_17603197_17603296 0.00 0.16 0.00 0.00 0.27 0.00 0.00 0.42 0.25 0.00 0.00 0.48 0.65 0.00 0.00 0.00 0.00 0.23 0.31 0.00 0.00 0.00 0.32 0.00 0.00 0.28 0.72 1.92 0.00 0.00 0.00 0.38 0.00 0.37 0.00 0.00 0.13 0.00 0.28 0.23 0.29 0.26 0.36 0.00 0.00 0.35 0.00 0.42 0.14 0.00 0.22 0.00 0.00 0.40 0.23 0.51 0.00 0.14 K intron_retention HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13176263_13178924 chrX_13176262_13176263;chrX_13178924_13178925 chrX_13176199_13176262;chrX_13178925_13178936 1.37 0.00 0.00 0.00 0.00 0.00 0.00 7.41 2.35 NA 0.00 4.44 5.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 8.33 6.06 10.00 5.56 0.00 24.14 NA 12.50 0.00 6.06 0.00 0.00 1.37 9.09 5.71 3.45 5.56 6.67 4.76 NA 0.00 0.00 6.45 NA NA 3.85 10.71 2.90 0.00 9.68 0.00 0.00 NA 4.76 NA NA 0.00 K alternative_acceptor CG11299,noncoding_8970,I_chr2R_19619053_19619186 chr2R + chr2R_19601598_19602203 chr2R_19601598_19602188 chr2R_19601444_19601597;chr2R_19602204_19602422 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA capu,I_chr2L_3884519_3902594,I_chr2L_3887800_3888648,I_chr2L_3887896_3888648 chr2L - chr2L_3887557_3888648 chr2L_3887800_3888648 chr2L_3888649_3888710;chr2L_3886984_3887556 0.00 NA NA NA NA NA 10.00 NA 0.00 NA NA NA NA NA NA NA NA NA 4.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA 4.17 0.00 NA NA NA NA NA NA NA NA NA K intron_retention CG4049,I_chr2R_20000795_20001276 chr2R - chr2R_19996175_19996223 chr2R_19996174_19996175;chr2R_19996223_19996224 chr2R_19994610_19996174;chr2R_19996224_19996457 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG42238,I_chr2L_20967747_20967858,I_chr2L_20967747_20968017,I_chr2L_20967747_20968635,I_chr2L_20967747_20968842,I_chr2L_20967747_20969164,I_chr2L_20967747_20993232,I_chr2L_20967747_21051685,RI_chr2L_20967747_21051705,noncoding_4091,RI_chr2L_21028682_21051773 chr2L - chr2L_20967747_20968810 chr2L_20967747_20968786 chr2L_20967726_20967746;chr2L_20968811_20968882 91.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 91.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Pax,RI_chr2L_19404683_19426205,RI_chr2L_19404823_19409403 chr2L - chr2L_19409911_19410247 chr2L_19409910_19409911;chr2L_19410247_19410248 chr2L_19409769_19409910;chr2L_19410248_19410413 0.43 0.00 0.00 0.34 0.43 0.52 0.75 0.66 0.56 0.00 0.00 0.95 1.22 0.00 0.65 0.61 0.00 0.80 0.71 1.14 0.97 0.37 0.34 0.00 0.49 0.00 1.28 0.00 0.54 0.00 0.67 0.79 0.00 1.10 0.42 0.00 0.28 0.00 0.28 0.68 0.61 0.19 0.00 0.35 1.05 0.00 0.81 0.79 0.47 0.00 0.74 1.38 0.00 1.12 0.36 0.00 0.52 0.00 K alternative_donor Shawn_Tyler,CG14213 chrX + chrX_19533110_19533177 chrX_19533117_19533177 chrX_19533178_19533426;chrX_19532929_19533109 77.78 80.95 71.43 74.65 74.29 79.49 88.52 78.57 82.93 71.43 71.88 69.23 85.19 80.56 78.85 77.27 82.86 63.64 88.64 79.41 63.16 71.05 72.41 80.77 86.11 82.50 82.69 80.00 80.56 74.07 67.50 86.36 80.00 73.33 82.05 93.10 63.83 68.09 74.55 72.97 78.79 84.71 76.32 68.89 72.73 77.59 72.50 85.19 78.82 80.00 76.27 72.73 70.59 77.78 83.93 80.43 76.27 65.52 K jcn_only_AD fs(1)h,I_chrX_7950171_7952371,RI_chrX_7954192_7954783,I_chrX_7954192_7955240 chrX - chrX_7954192_7955408 chrX_7954192_7955296 chrX_7954092_7954191;chrX_7955409_7955445 96.43 NA NA NA NA NA 91.30 96.88 97.30 NA NA 95.83 NA NA NA 96.43 NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 96.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG3635 chr2L + chr2L_22183467_22183599;chr2L_22183467_22183607 chr2L_22183467_22183527 chr2L_22183394_22183466;chr2L_22183608_22183915 40.37 36.64 27.42 26.47 29.33 35.63 54.40 31.48 38.66 54.67 33.70 39.69 38.46 47.25 32.06 41.73 33.68 28.71 40.37 40.30 36.08 27.68 32.03 46.25 54.02 38.96 32.93 38.37 48.57 41.94 41.53 51.46 34.06 35.90 37.38 64.77 49.61 45.16 44.03 49.17 51.49 33.04 34.29 53.59 40.31 51.14 48.42 55.90 42.72 35.51 48.10 56.00 42.75 47.79 41.88 42.14 37.77 48.28 K intron_retention CG4630,RI_chr2R_9103472_9103634,I_chr2R_9103765_9103852,I_chr2R_9103910_9104108,I_chr2R_9103956_9104108,RI_chr2R_9104206_9104265 chr2R - chr2R_9103765_9103852 chr2R_9103764_9103765;chr2R_9103852_9103853 chr2R_9103665_9103764;chr2R_9103853_9103909 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA K jcn_only_AD CG2177,I_chr4_334269_334329,I_chr4_334269_334505 chr4 - chr4_334269_334329;chr4_334269_334373 chr4_334269_334324 chr4_334169_334268;chr4_334374_334429 10.71 8.20 12.82 9.62 7.89 10.75 37.96 16.30 20.75 3.70 21.31 7.41 11.11 7.61 11.76 9.89 15.15 9.52 10.53 9.52 12.77 6.17 14.29 13.51 14.10 10.57 4.41 4.65 8.11 5.95 23.45 5.94 13.33 12.43 9.23 3.00 16.13 16.67 10.17 9.70 10.68 16.22 17.53 10.71 4.21 15.71 18.37 8.90 8.20 15.22 14.29 9.30 11.94 12.31 13.87 9.38 10.71 4.21 K alternative_donor Nedd4,I_chr3L_17526753_17527450,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17526753_17527450;chr3L_17526749_17527450 chr3L_17526950_17527450 chr3L_17527451_17527550;chr3L_17526708_17526748 46.77 48.00 50.00 64.29 23.53 29.79 53.85 38.71 50.70 57.14 50.00 43.96 51.85 42.86 36.17 55.56 40.00 42.86 46.67 50.00 51.72 50.00 46.77 41.67 35.42 42.50 43.24 66.67 36.11 41.18 37.50 50.00 43.40 53.12 50.00 52.27 65.22 45.45 48.89 66.00 42.11 36.56 35.48 58.06 50.00 39.39 54.55 47.27 39.56 47.62 50.00 47.06 20.83 50.00 34.00 33.33 26.67 32.14 K alternative_donor RpL27A,E_chr2L_4457411_4457977,I_chr2L_4457510_4457892,snoRNA:Me18S-C1831,I_chr2L_4458058_4458120 chr2L - chr2L_4457510_4457892 chr2L_4457510_4457739 chr2L_4457412_4457509;chr2L_4457893_4457992 99.99 100.00 100.00 99.97 100.00 100.00 99.99 99.99 99.99 100.00 100.00 99.99 99.99 100.00 100.00 99.99 99.99 100.00 100.00 99.99 99.99 99.63 99.99 100.00 99.99 99.98 99.99 100.00 99.99 100.00 100.00 99.99 100.00 99.99 99.99 99.99 100.00 100.00 99.99 99.99 100.00 100.00 99.98 100.00 99.99 100.00 99.99 99.99 99.99 100.00 99.99 100.00 100.00 99.99 100.00 100.00 100.00 100.00 N intron_retention Moe,I_chrX_8774434_8791759 chrX - chrX_8791324_8792216 chrX_8791323_8791324;chrX_8792216_8792217 chrX_8792217_8792259 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 82.86 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA K intron_retention CG15609,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12900214_12900789 chr2R_12900213_12900214;chr2R_12900789_12900790 chr2R_12899457_12900213;chr2R_12900790_12900889 100.00 100.00 100.00 93.75 100.00 100.00 64.10 97.73 98.08 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 97.87 95.83 94.44 97.62 100.00 100.00 94.44 100.00 100.00 90.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 97.73 94.74 100.00 100.00 100.00 100.00 100.00 96.88 94.12 96.30 100.00 100.00 100.00 100.00 100.00 100.00 NA K intron_retention f-cup,I_chr3R_9524004_9524059,EI_chr3R_9524613_9524789 chr3R - chr3R_9523761_9523812 chr3R_9523760_9523761;chr3R_9523812_9523813 chr3R_9523557_9523760;chr3R_9523813_9524002 0.00 0.00 7.41 0.00 0.00 5.56 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 7.50 15.00 12.50 0.00 16.67 NA 0.00 2.94 0.00 5.56 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 2.04 4.17 2.27 0.00 0.00 0.00 0.00 4.17 0.00 NA K alternative_donor Fkbp13,I_chr2R_17375346_17375523 chr2R - chr2R_17375351_17375523 chr2R_17375351_17375511 chr2R_17374670_17375350;chr2R_17375524_17375623 0.48 0.18 0.24 0.53 0.00 0.82 0.88 0.27 0.33 0.56 0.80 0.70 1.01 0.55 0.82 0.22 0.77 0.22 0.47 0.48 0.49 0.74 1.01 0.32 1.38 0.28 1.08 1.11 2.23 0.60 0.90 0.49 0.17 0.59 0.00 0.33 0.59 0.42 0.64 0.40 0.43 0.40 0.00 0.48 0.31 0.27 0.56 0.24 0.65 0.64 0.24 0.00 0.47 0.19 0.85 0.32 0.13 0.27 K intron_retention CG15438,CG15439,CG15440 chr2L - chr2L_4448294_4448359 chr2L_4448293_4448294;chr2L_4448359_4448360 chr2L_4447906_4448293;chr2L_4448360_4448710 4.35 2.70 2.94 3.23 0.00 3.23 4.00 0.00 2.67 0.00 4.76 0.86 3.70 1.89 2.41 16.47 0.00 0.00 0.00 5.11 0.00 28.57 4.81 3.90 8.00 0.00 4.35 7.25 6.32 6.35 4.48 8.82 15.29 4.72 12.77 8.57 4.17 3.12 2.56 6.50 7.14 1.61 0.00 10.71 7.53 7.95 6.45 10.09 2.29 7.55 4.21 4.76 0.00 6.25 7.79 7.27 0.00 6.93 K intron_retention Incenp chr2R + chr2R_3167672_3167734 chr2R_3167671_3167672;chr2R_3167734_3167735 chr2R_3166612_3167671;chr2R_3167735_3167831 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.99 6.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13414489_13414718;chr2R_13413922_13414718;chr2R_13413823_13414718;chr2R_13413919_13414718 chr2R_13414486_13414718 chr2R_13414719_13414817 98.37 97.83 98.17 97.44 97.98 98.96 98.25 99.37 99.63 96.83 92.68 99.09 97.98 98.37 99.21 99.05 99.07 100.00 100.00 99.44 97.94 94.06 98.68 98.21 93.02 88.30 94.74 100.00 98.87 97.32 96.67 100.00 98.84 99.39 99.10 95.68 97.51 99.15 98.84 97.70 96.79 98.17 94.52 98.73 96.27 97.73 96.92 98.28 99.56 100.00 99.33 98.91 95.29 100.00 99.35 98.02 100.00 98.77 K intron_retention I_chrX_7993650_7995126,Gclc chrX - chrX_8009614_8010024 chrX_8009613_8009614;chrX_8010024_8010025 chrX_8009450_8009613;chrX_8010025_8010150 2.35 0.00 0.00 8.24 0.00 6.12 1.08 5.21 3.12 0.00 5.00 3.73 3.39 0.00 3.28 4.10 0.00 6.67 0.00 3.92 4.44 2.95 1.00 0.82 2.22 5.26 1.32 2.75 12.88 1.97 2.40 1.69 2.92 2.56 0.93 0.00 0.44 0.71 2.35 1.02 3.66 5.22 3.77 1.49 2.70 2.59 0.00 2.81 2.91 2.27 2.16 1.04 0.00 0.00 1.59 1.41 3.96 3.75 K jcn_only_AA CG32394,RI_chr3L_6731199_6731803,dikar chr3L - chr3L_6730773_6731803 chr3L_6731199_6731803 chr3L_6731804_6731903;chr3L_6730635_6730772 0.00 4.00 3.45 9.09 0.00 2.78 0.00 0.00 1.32 8.16 NA 4.35 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 24.49 1.69 8.11 0.00 0.00 0.00 17.07 12.96 8.33 0.00 NA 9.30 0.00 0.00 2.78 6.90 0.00 5.88 8.57 NA 0.00 0.00 18.92 NA 4.76 NA 11.84 0.00 NA 0.00 4.00 0.00 NA 0.00 NA NA 0.00 K intron_retention Trf4-1,I_chrX_8459198_8459266 chrX + chrX_8459198_8459409 chrX_8459197_8459198;chrX_8459409_8459410 chrX_8459098_8459197;chrX_8459410_8460089 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 4.35 0.00 0.00 1.30 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 K alternative_donor cbs,I_chr2R_9340506_9340593,I_chr2R_9340512_9340593 chr2R + chr2R_9340536_9340593;chr2R_9340512_9340593 chr2R_9340506_9340593 chr2R_9340594_9340693;chr2R_9340412_9340505 6.98 4.35 7.69 4.76 7.69 0.00 8.89 8.57 7.41 0.00 14.29 2.44 13.64 4.17 11.54 10.26 5.88 16.00 3.70 7.55 7.69 8.33 6.45 3.23 14.29 5.56 3.12 8.33 15.00 8.70 9.30 0.00 5.26 4.44 19.05 4.76 4.76 10.00 6.67 3.12 12.12 6.67 13.33 6.67 14.29 6.98 4.35 5.26 2.78 10.26 2.70 14.29 0.00 3.70 11.11 15.91 14.29 3.45 K jcn_only_AA CG2219,I_chr4_199813_199889,RI_chr4_202143_202194 chr4 - chr4_199813_199889;chr4_199822_199889 chr4_199838_199889 chr4_199890_199942;chr4_199758_199812 93.44 96.00 90.00 88.57 97.44 100.00 90.91 94.79 95.86 92.31 97.56 92.00 94.37 92.42 97.73 92.13 90.14 89.47 91.94 92.59 91.18 90.00 95.15 95.40 92.45 88.89 95.35 94.64 93.02 98.41 90.62 94.64 91.67 89.47 94.23 95.92 94.44 92.31 92.86 94.05 90.91 87.00 88.24 96.30 90.00 93.75 100.00 93.44 91.60 91.51 93.51 94.74 100.00 92.31 95.65 96.72 95.88 96.10 K jcn_only_AA CG1599,I_chr2R_5729744_5729805 chr2R - chr2R_5729673_5729805;chr2R_5729731_5729805 chr2R_5729744_5729805 chr2R_5729806_5729905;chr2R_5729644_5729672 0.91 0.00 1.00 1.14 3.23 0.00 1.63 1.05 1.14 0.00 2.82 0.00 0.91 0.00 0.00 0.00 0.00 1.15 1.74 1.53 1.27 0.00 0.74 1.47 2.25 1.65 0.00 0.00 2.04 0.00 0.78 1.59 0.00 0.96 1.67 0.00 0.00 0.00 0.00 0.80 0.00 0.00 3.03 1.22 2.04 3.03 1.68 0.00 1.54 2.08 0.00 1.39 0.00 1.59 0.93 0.85 0.88 0.00 K jcn_only_AA CG6043,I_chr2L_13267973_13268086 chr2L + chr2L_13274377_13274690;chr2L_13274377_13274642 chr2L_13274377_13274651 chr2L_13274310_13274376;chr2L_13274691_13274770 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA K intron_retention B4,I_chr2L_13513474_13549131,I_chr2L_13547133_13549131,I_chr2L_13547162_13547692,I_chr2L_13547304_13549131 chr2L - chr2L_13547304_13549131 chr2L_13547303_13547304;chr2L_13549131_13549132 chr2L_13547204_13547303;chr2L_13549132_13549231 56.25 41.67 53.33 73.68 NA 50.00 65.00 55.56 72.00 NA NA 34.62 NA 63.64 52.63 72.22 50.00 72.73 53.33 63.64 66.67 71.43 43.75 66.67 60.00 50.00 53.33 65.00 71.43 62.50 55.00 70.00 54.05 57.14 58.82 66.67 54.55 NA 53.33 62.50 53.33 65.22 50.00 45.45 42.86 56.25 NA 76.19 57.69 64.29 45.45 60.00 NA NA 40.00 40.00 56.25 56.25 K intron_retention CG12130,I_chr2R_5849630_5849730,I_chr2R_5850249_5850702 chr2R + chr2R_5849568_5849730 chr2R_5849567_5849568;chr2R_5849730_5849731 chr2R_5849530_5849567;chr2R_5849731_5849830 4.38 3.28 3.57 7.50 0.00 7.69 12.90 10.53 1.37 0.00 0.00 7.89 3.85 NA 4.17 0.00 5.56 8.33 0.00 3.64 0.00 21.95 5.32 8.00 0.00 0.00 8.20 5.56 5.26 5.00 11.76 11.11 4.17 0.00 4.44 0.00 4.31 1.59 6.38 10.42 1.96 5.06 10.53 1.72 2.27 6.35 1.49 2.70 5.26 3.90 6.15 7.69 0.00 5.26 3.85 5.80 5.80 1.06 K intron_retention CG7006 chr3R + chr3R_20676493_20676543 chr3R_20676492_20676493;chr3R_20676543_20676544 chr3R_20676314_20676492;chr3R_20676544_20677192 0.00 0.00 0.00 5.41 0.00 0.00 0.00 2.27 0.00 4.35 0.00 3.12 0.00 6.67 0.00 0.00 0.00 3.33 2.56 3.30 0.00 0.00 3.28 0.00 4.00 0.00 0.00 7.89 20.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 4.55 0.00 0.00 6.56 0.00 0.00 0.00 1.27 0.00 K intron_retention RI_chr3L_9408567_9410728,RpS17,I_chr3L_9422428_9422797 chr3L - chr3L_9422215_9422273 chr3L_9422214_9422215;chr3L_9422273_9422274 chr3L_9422116_9422214;chr3L_9422274_9422425 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.02 0.00 0.02 0.00 0.00 0.06 0.00 0.00 0.00 0.05 0.03 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.24 0.02 0.00 0.06 0.00 0.00 0.05 0.00 0.03 0.00 0.00 0.01 0.00 0.00 0.02 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.03 0.00 0.00 0.03 0.03 0.02 0.00 0.00 0.01 K jcn_only_AD PhKgamma,I_chrX_11590179_11590249,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11590345_11590435;chrX_11589973_11590435 chrX_11590179_11590435 chrX_11590436_11590535;chrX_11589857_11589972 4.00 4.35 NA NA NA NA NA 33.33 8.33 0.00 NA 4.17 NA NA NA NA NA NA NA 7.69 NA 0.00 3.45 0.00 4.55 NA 0.00 0.00 4.00 NA NA NA NA NA NA NA 7.41 0.00 4.00 5.00 NA 5.13 NA 4.35 NA 0.00 NA 0.00 NA 0.00 3.12 4.55 NA NA NA 4.55 NA NA K alternative_donor CG3689,I_chr3L_9405436_9406302 chr3L + chr3L_9405083_9406302 chr3L_9405436_9406302 chr3L_9406303_9406402;chr3L_9404917_9405082 10.13 7.89 10.13 7.64 6.58 6.94 13.85 10.40 12.23 7.81 14.00 11.81 19.40 10.00 8.24 11.22 12.90 11.84 11.70 14.09 17.50 7.79 18.89 8.26 13.33 12.68 14.04 15.38 11.11 9.09 12.63 6.40 8.09 10.29 8.97 8.70 13.33 11.36 12.10 8.75 4.58 13.10 12.31 15.07 3.20 6.90 8.20 4.90 14.08 7.48 11.29 8.25 10.13 5.45 8.42 8.87 5.26 5.58 K intron_retention Dscam,F_chr2R_3219886_3225754,I_chr2R_3219886_3226532,FI_chr2R_3219886_3227659,F_chr2R_3219886_3228449,F_chr2R_3219886_3228832,F_chr2R_3226043_3235353,F_chr2R_3227948_3235353,F_chr2R_3228738_3235353,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3225665_3235353 chr2R_3225664_3225665;chr2R_3235353_3235354 chr2R_3225386_3225664;chr2R_3235354_3235453 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 93.75 NA NA NA 100.00 NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 92.86 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG8635 chr2R - chr2R_4519012_4519137 chr2R_4519012_4519109 chr2R_4518577_4519011;chr2R_4519138_4519178 0.00 0.00 0.00 0.70 0.00 0.00 0.00 3.07 1.67 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.51 0.00 1.37 0.00 0.00 0.00 1.35 0.00 1.61 1.69 1.32 2.91 0.00 0.98 0.88 1.82 0.00 1.96 2.22 0.00 0.00 0.00 0.66 0.00 2.38 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.86 0.00 0.87 0.51 K jcn_only_AA CG31705,I_chr2L_11525668_11525916 chr2L - chr2L_11525668_11528120 chr2L_11526013_11528120 chr2L_11528121_11528201;chr2L_11525594_11525667 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585739_2586265;chr3L_2585739_2586036;chr3L_2585739_2586413 chr3L_2585739_2586402 chr3L_2585639_2585738;chr3L_2586414_2586502 85.96 83.33 87.50 89.38 87.50 89.74 78.81 89.78 86.84 82.76 84.72 89.10 88.24 90.22 88.89 87.01 85.96 84.00 84.44 90.30 88.14 80.68 85.11 81.03 81.82 87.50 81.48 81.82 73.20 84.72 91.07 90.32 83.33 88.81 84.93 87.01 80.00 87.30 87.27 83.82 80.00 88.54 86.57 81.91 92.86 90.14 81.08 85.53 87.43 79.17 84.69 87.04 85.29 84.62 91.82 87.76 83.33 82.54 K intron_retention CG8485,I_chr2R_10126696_10126750 chr2R - chr2R_10126696_10126955 chr2R_10126695_10126696;chr2R_10126955_10126956 chr2R_10126596_10126695;chr2R_10126956_10127190 0.00 2.86 0.00 4.17 0.00 3.12 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 5.71 4.35 0.00 0.00 3.23 0.00 0.00 1.92 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 K jcn_only_AD Vrp1,I_chr2R_17997529_17997692 chr2R - chr2R_18000094_18003669 chr2R_18000094_18003655 chr2R_17999715_18000093;chr2R_18003670_18003673 85.71 NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG5978,I_chr3L_8616035_8616091 chr3L - chr3L_8616650_8616707 chr3L_8616649_8616650;chr3L_8616707_8616708 chr3L_8616177_8616649;chr3L_8616708_8616787 0.00 6.25 0.00 0.00 0.00 0.00 3.70 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 NA 9.52 8.33 NA 4.76 0.00 8.70 0.00 0.00 0.00 NA NA 3.70 5.26 0.00 0.00 14.29 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.38 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K cassette grp,I_chr2L_16697644_16698961,R_chr2L_16698072_16698138 chr2L + chr2L_16697644_16698961 chr2L_16697644_16698138;chr2L_16698349_16698961 chr2L_16698139_16698348 chr2L_16697544_16697643;chr2L_16698962_16699061 98.61 98.86 98.63 99.21 98.61 98.41 98.63 99.09 97.50 98.33 97.73 97.62 98.04 98.39 97.67 98.81 98.18 98.39 100.00 98.79 98.11 99.00 97.69 97.41 98.53 97.59 98.92 93.22 98.61 98.82 98.78 98.65 99.04 97.25 98.65 91.25 97.45 98.95 97.97 98.32 93.85 99.30 98.25 98.86 98.02 98.98 97.67 99.07 99.30 98.63 99.09 98.25 97.44 98.86 96.70 98.96 98.90 99.00 K intron_retention CG7970 chr3L + chr3L_1653044_1653141 chr3L_1653043_1653044;chr3L_1653141_1653142 chr3L_1652975_1653043;chr3L_1653142_1653254 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 2.41 0.00 0.00 12.77 0.00 0.00 0.00 0.00 1.98 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 6.25 0.00 0.00 NA 0.00 0.00 4.17 0.00 K intron_retention Jupiter,I_chr3R_7417030_7419354,I_chr3R_7417630_7417716,RI_chr3R_7442793_7445425 chr3R - chr3R_7417634_7417716 chr3R_7417633_7417634;chr3R_7417716_7417717 chr3R_7417223_7417633;chr3R_7417717_7417734 92.31 90.91 100.00 93.33 NA NA 85.71 100.00 100.00 NA NA 92.86 87.50 100.00 100.00 81.82 NA 87.50 NA 94.74 NA 95.24 95.83 80.00 90.91 90.00 78.95 70.83 70.00 82.35 100.00 100.00 78.57 91.67 93.33 91.67 80.95 92.31 83.33 92.00 85.71 95.24 NA 92.31 93.33 88.46 93.33 94.44 93.75 93.75 87.50 86.67 92.86 86.67 88.89 100.00 94.44 93.75 K intron_retention CG30085,I_chr2R_11756325_11756380 chr2R - chr2R_11756325_11756409 chr2R_11756324_11756325;chr2R_11756409_11756410 chr2R_11756225_11756324;chr2R_11756410_11756480 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 2.15 0.00 0.00 1.98 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 20.00 1.37 0.00 0.00 0.00 4.26 8.82 2.63 1.72 0.00 0.00 0.00 1.54 0.00 0.00 3.39 2.56 3.39 0.00 0.00 2.15 0.00 4.44 2.86 0.00 3.45 2.70 0.00 0.00 3.80 0.00 3.85 0.00 0.00 0.00 0.00 1.22 K jcn_only_AA I_chr2R_9844856_9845327,CG13349,RI_chr2R_9846641_9846709 chr2R - chr2R_9846605_9846709 chr2R_9846641_9846709 chr2R_9846710_9846809;chr2R_9846541_9846604 1.16 0.66 1.14 1.87 1.90 0.00 1.02 0.95 2.79 1.16 1.10 1.62 2.90 2.17 0.90 0.00 7.04 2.33 2.90 0.49 2.33 2.21 0.96 0.52 0.00 0.00 1.04 0.00 1.67 2.07 1.15 0.88 2.59 0.65 1.77 0.88 0.73 0.48 0.88 2.69 0.00 1.33 4.48 1.57 2.02 3.66 0.55 4.31 2.36 1.31 1.35 2.25 2.00 0.74 0.93 2.25 0.95 0.59 K cassette Nedd4,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17534504_17536604 chr3L_17534504_17534775;chr3L_17535067_17536604 chr3L_17534776_17535066 chr3L_17534419_17534503;chr3L_17536605_17536704 3.65 2.33 3.67 2.40 2.78 3.37 4.72 2.99 2.88 3.88 2.67 4.72 3.85 4.76 4.12 2.74 2.78 2.25 2.20 2.26 3.61 10.40 4.06 4.00 2.22 1.15 3.65 2.60 8.90 5.43 6.19 3.85 5.05 2.52 4.46 4.35 4.26 3.45 5.81 3.27 3.61 2.53 1.49 10.37 4.46 3.82 3.45 7.73 2.91 1.10 4.67 2.04 8.79 2.90 2.19 7.14 12.68 11.81 K jcn_only_AD ATPsyn-beta chr4 + chr4_1052580_1053532 chr4_1052864_1053532 chr4_1053533_1053844;chr4_1052474_1052579 0.00 0.00 0.08 0.06 0.00 0.00 0.06 0.00 0.04 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.21 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.14 0.00 0.05 0.18 0.11 0.00 0.00 0.00 0.08 0.00 0.12 0.00 K intron_retention Rbp2,I_chrX_16343528_16343906 chrX + chrX_16345825_16345951 chrX_16345824_16345825;chrX_16345951_16345952 chrX_16345735_16345824;chrX_16345952_16346631 12.50 NA NA NA NA NA NA NA NA NA 3.45 NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA 22.73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor nito,I_chr2R_3852832_3852883 chr2R + chr2R_3850065_3850273 chr2R_3850109_3850273 chr2R_3850274_3850898;chr2R_3850045_3850064 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 K intron_retention lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,RI_chr2L_22823579_22823640,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22818652_22820169 chr2L_22818651_22818652;chr2L_22820169_22820170 chr2L_22818298_22818651;chr2L_22820170_22820497 4.17 1.43 4.35 5.22 6.15 1.59 3.23 2.42 4.30 0.00 3.03 4.79 2.11 5.41 2.22 5.26 2.94 2.74 1.75 0.70 3.77 5.00 3.08 6.38 0.00 2.50 2.70 8.00 11.76 7.89 3.88 12.50 10.34 4.26 4.17 5.88 0.00 8.82 2.56 5.56 5.00 2.98 5.62 3.03 4.00 6.82 11.76 0.00 5.30 13.64 2.78 4.17 3.85 8.33 1.12 3.23 12.07 19.05 K cassette Ac3,I_chr2L_21635211_21637957,I_chr2L_21643253_21646594 chr2L + chr2L_21635211_21637957 chr2L_21635211_21637658;chr2L_21637787_21637957 chr2L_21637659_21637786 chr2L_21635129_21635210;chr2L_21637958_21638057 93.75 90.00 92.31 73.33 100.00 83.33 100.00 100.00 100.00 90.00 100.00 80.95 100.00 90.91 91.67 100.00 100.00 100.00 92.31 88.46 85.71 100.00 92.86 100.00 90.00 90.00 93.33 100.00 100.00 88.89 100.00 100.00 93.75 94.44 100.00 70.59 94.44 100.00 94.44 100.00 80.00 93.75 85.71 90.91 80.00 100.00 100.00 88.89 100.00 93.75 94.44 90.00 100.00 100.00 86.67 90.00 80.00 88.89 K intron_retention CG7407 chr3L + chr3L_21816764_21816825 chr3L_21816763_21816764;chr3L_21816825_21816826 chr3L_21816515_21816763;chr3L_21816826_21817662 6.67 NA 12.50 8.70 NA 11.76 NA 16.00 6.67 NA NA 10.00 12.50 NA 0.00 14.29 NA NA 5.88 15.15 NA NA 0.00 11.76 NA NA 16.67 5.88 31.25 12.50 30.77 NA NA 0.00 NA 28.57 6.67 NA 0.00 0.00 46.67 4.76 NA NA 16.67 0.00 3.85 NA 12.00 0.00 4.35 NA 0.00 0.00 NA 5.26 0.00 NA K alternative_last_exon br,I_chrX_1517022_1518170,chrX_1531825_1532171.0,chrX_1532359_1533289.0,chrX_1533577_1534629.0,chrX_1535554_1536485.0,chrX_1539850_1540090.0,chrX_1540212_1541396.0,chrX_1544237_1547430.0,chrX_1547632_1547887.0,noncoding_21384,dor chrX + chrX_1531368_1548424;chrX_1531368_1537100,chrX_1531368_1536917;chrX_1531368_1541397 chrX_1531368_1552820 chrX_1548425_1550023;chrX_1537101_1539195;chrX_1541398_1544171 chrX_1552821_1559444 chrX_1531317_1531367 7.81 7.27 6.38 6.00 7.14 9.76 12.70 4.88 7.46 5.13 8.70 5.56 10.81 8.00 3.85 13.43 28.12 11.11 8.89 7.21 4.65 15.62 2.83 10.26 9.76 10.26 11.48 23.40 5.66 4.95 5.77 2.70 4.44 9.68 7.81 5.66 10.00 10.71 11.11 2.91 7.32 0.95 11.36 9.62 10.87 6.06 10.64 2.63 7.27 9.86 6.49 11.90 6.25 14.29 9.68 9.09 4.17 2.36 K alternative_acceptor mub,RI_chr3L_21901021_21901163,I_chr3L_21908756_21909179 chr3L + chr3L_21914088_21914192;chr3L_21914088_21914153;chr3L_21914088_21914141 chr3L_21914088_21914156 chr3L_21914067_21914087;chr3L_21914193_21914427 21.68 24.24 30.00 5.00 28.57 15.00 15.38 22.22 18.00 12.50 42.86 25.71 17.65 18.75 15.79 16.67 27.27 23.53 NA 26.09 9.52 12.20 18.52 15.00 18.75 15.38 32.26 10.53 26.32 24.14 6.67 45.45 27.78 12.50 20.00 16.67 28.79 30.00 11.36 21.74 28.57 15.22 7.69 27.27 33.33 25.00 23.81 34.78 20.00 27.59 21.62 19.23 29.41 12.00 16.67 22.73 34.62 30.77 K intron_retention hppy,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15105700_15111557 chr2R_15105699_15105700;chr2R_15111557_15111558 chr2R_15105636_15105699;chr2R_15111558_15111891 27.50 27.50 24.24 40.62 10.71 17.65 19.72 22.45 27.91 31.25 21.21 29.03 32.14 36.36 20.45 26.32 18.52 24.32 20.69 25.76 16.13 68.42 45.45 29.41 43.59 41.38 30.51 19.15 25.00 42.86 30.00 15.38 28.95 32.14 29.79 48.08 32.89 28.30 27.40 25.81 30.77 27.03 26.09 33.90 25.00 35.29 25.00 27.27 23.46 35.48 25.00 33.33 26.83 28.00 41.94 26.32 30.43 12.50 K jcn_only_AD Orc2 chr3R + chr3R_9791304_9791371 chr3R_9791308_9791371 chr3R_9791372_9792217;chr3R_9790714_9791303 3.85 5.00 0.00 6.45 0.00 0.00 10.34 2.33 8.00 NA 3.70 4.65 NA 4.55 4.65 0.00 0.00 5.26 0.00 0.00 4.35 NA 10.53 7.69 NA 0.00 5.00 NA NA 0.00 NA 0.00 3.33 2.50 0.00 NA 0.00 0.00 4.88 4.76 NA 7.25 4.00 0.00 5.13 9.38 NA 3.57 5.45 8.57 2.50 0.00 4.00 NA 6.38 2.94 0.00 4.35 K alternative_donor pelo,I_chr2L_9706747_9706980,I_chr2L_9707821_9708144,I_chr2L_9707891_9708144,I_chr2L_9708081_9708144 chr2L + chr2L_9707891_9708144;chr2L_9708081_9708144;chr2L_9707821_9708144 chr2L_9706747_9708144 chr2L_9708145_9708244;chr2L_9706647_9706746 100.00 100.00 100.00 97.56 100.00 100.00 97.92 97.22 98.91 100.00 100.00 98.73 100.00 100.00 100.00 98.44 100.00 97.44 100.00 98.63 100.00 97.67 98.41 98.46 100.00 98.08 98.57 97.78 100.00 100.00 100.00 100.00 100.00 98.21 100.00 98.31 100.00 100.00 100.00 98.77 100.00 97.40 100.00 100.00 100.00 100.00 100.00 98.85 97.47 100.00 98.53 100.00 100.00 100.00 100.00 100.00 100.00 99.06 K intron_retention CG7841,RI_chr3L_15499446_15500898,I_chr3L_15500695_15500898,RI_chr3L_15500713_15500898 chr3L - chr3L_15499446_15500572 chr3L_15499445_15499446;chr3L_15500572_15500573 chr3L_15499346_15499445;chr3L_15500573_15500666 21.63 18.75 20.00 22.22 NA 14.29 22.86 33.33 29.73 0.00 30.77 23.81 NA NA 27.27 35.29 36.36 43.75 26.67 40.00 NA 15.15 16.67 25.00 NA 22.22 16.67 13.04 18.18 15.62 30.00 28.57 8.57 22.22 13.33 20.00 13.64 NA 22.22 36.36 16.00 26.32 NA 8.00 21.05 18.52 26.67 23.08 25.93 11.76 14.29 6.25 20.00 NA 30.00 NA 11.76 3.57 K alternative_donor gus,I_chr2R_1009158_1009345,RI_chr2R_1009158_1011540,I_chr2R_1009346_1015730 chr2R - chr2R_1009158_1009273;chr2R_1009158_1009241 chr2R_1009158_1009277 chr2R_1009058_1009157;chr2R_1009278_1009300 25.00 NA NA 28.57 NA NA NA 18.18 40.00 NA NA 25.00 16.67 NA NA 25.00 NA NA NA 57.14 NA NA NA 50.00 NA NA NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA 14.29 20.00 NA NA NA NA NA 28.57 NA NA NA NA NA NA NA NA 44.44 K alternative_donor CG12393,CG9135 chr2L + chr2L_6048627_6048693;chr2L_6048631_6048693 chr2L_6048635_6048693 chr2L_6048694_6048702;chr2L_6048512_6048626 33.33 33.33 41.67 39.13 33.33 36.36 33.33 32.00 38.71 NA 41.67 33.33 35.71 30.00 40.00 35.48 38.46 36.00 35.29 32.26 35.29 31.82 30.00 27.27 NA 30.00 28.57 50.00 37.50 25.00 25.00 40.00 27.27 32.00 33.33 36.36 33.33 28.57 31.82 25.00 30.00 28.57 45.45 30.00 25.00 23.08 44.44 23.08 34.78 28.57 31.25 30.00 25.00 33.33 35.29 36.36 25.00 28.57 K intron_retention beta-Spec chrX + chrX_17561772_17562139 chrX_17561771_17561772;chrX_17562139_17562140 chrX_17561603_17561771;chrX_17562140_17562147 26.66 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.76 NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA 33.33 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG1927,RI_chr3L_1967428_1967489,RI_chr3L_1967503_1967958,RI_chr3L_1967503_1968077 chr3L - chr3L_1967503_1969599 chr3L_1967503_1967958 chr3L_1967490_1967502;chr3L_1969600_1970134 1.10 0.00 1.45 0.89 0.00 1.82 0.95 0.85 1.49 0.00 0.00 1.69 1.35 0.00 0.00 1.03 1.54 0.00 0.00 1.28 0.00 0.00 0.00 1.25 0.00 1.37 1.32 2.33 0.00 1.61 1.10 1.96 0.00 0.89 2.04 1.61 0.00 0.00 1.47 2.15 1.59 1.31 1.61 1.37 1.25 1.15 1.27 1.67 1.63 0.00 1.32 0.00 0.00 0.00 1.12 0.00 0.00 1.09 K cassette katanin-60 chr3R - chr3R_1056348_1057778 chr3R_1056348_1056714;chr3R_1057036_1057778 chr3R_1056715_1057035 chr3R_1055744_1056347;chr3R_1057779_1057940 97.22 97.67 97.22 70.69 96.77 90.62 97.67 86.79 98.84 100.00 93.75 88.89 87.88 96.15 100.00 97.56 100.00 97.30 87.88 95.10 87.50 81.36 98.39 98.08 96.97 97.06 97.83 96.77 91.67 94.12 97.22 100.00 93.33 98.08 97.22 97.44 98.39 97.73 98.21 94.74 96.55 98.48 90.32 95.35 97.87 95.92 97.50 98.28 94.74 98.31 92.73 97.14 100.00 96.55 97.73 100.00 100.00 100.00 K intron_retention CG15111 chr2R + chr2R_15026855_15027198 chr2R_15026854_15026855;chr2R_15027198_15027199 chr2R_15026788_15026854;chr2R_15027199_15027317 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 3.85 NA NA 6.06 NA NA 0.00 6.67 NA NA 0.00 3.45 NA NA 4.00 0.00 12.50 NA 0.00 NA NA NA 0.00 NA NA 3.45 NA NA 0.00 NA 8.33 NA NA 4.17 NA 7.69 NA NA NA NA 6.45 8.33 NA 0.00 NA 7.69 0.00 0.00 0.00 NA K alternative_acceptor Zyx102EF,I_chr4_1078380_1078835,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1078644_1078835;chr4_1078778_1078835;chr4_1078782_1078835 chr4_1078666_1078835 chr4_1078836_1078848;chr4_1078433_1078643 37.50 38.89 37.50 37.78 30.00 46.67 23.26 43.48 31.71 50.00 25.00 42.50 40.00 33.33 23.53 34.04 31.25 33.33 44.44 30.00 28.57 50.00 36.84 50.00 11.11 30.00 35.71 42.86 20.00 44.44 33.33 30.00 42.86 22.50 33.33 27.27 25.00 57.14 30.77 41.67 50.00 39.47 27.27 39.13 37.50 42.86 50.00 46.15 33.33 41.67 35.29 25.00 46.15 41.18 38.89 43.75 35.00 41.38 K intron_retention CG6650 chr3L + chr3L_14025471_14025524 chr3L_14025470_14025471;chr3L_14025524_14025525 chr3L_14025143_14025470;chr3L_14025525_14025743 1.09 1.46 1.15 0.79 2.11 0.00 1.02 2.21 1.45 3.64 0.00 1.12 0.00 0.00 1.90 0.00 2.53 1.06 0.00 2.96 0.00 2.94 1.97 1.11 0.00 0.00 2.53 0.00 0.00 0.00 0.00 2.50 1.12 1.80 0.00 2.80 0.41 1.09 1.67 2.07 0.00 2.22 0.00 1.32 4.55 4.26 0.00 0.00 2.84 0.00 2.21 0.00 0.00 2.33 0.00 0.98 4.21 0.00 K intron_retention CG10026 chr2L + chr2L_19455858_19456408 chr2L_19455857_19455858;chr2L_19456408_19456409 chr2L_19455678_19455857;chr2L_19456409_19456568 58.12 NA NA 60.00 NA NA NA 56.25 45.45 NA NA 53.85 46.15 NA 70.00 90.00 NA NA NA 38.89 NA NA NA NA NA NA NA NA NA NA NA NA NA 70.00 NA NA NA NA NA NA NA 43.75 NA NA NA NA NA NA 71.43 NA NA NA NA NA 63.64 NA NA NA K intron_retention CG1407,RI_chr2R_5918952_5919093 chr2R - chr2R_5917764_5918589 chr2R_5917763_5917764;chr2R_5918589_5918590 chr2R_5917094_5917763;chr2R_5918590_5918719 0.64 1.68 4.05 5.21 1.79 1.61 2.70 5.00 0.00 0.00 0.00 1.36 5.00 0.00 0.00 4.60 0.00 0.00 0.00 3.85 0.00 1.25 1.29 1.29 0.00 0.00 4.76 5.41 0.00 0.00 0.00 0.00 2.70 0.00 3.12 0.88 0.64 0.00 1.07 2.31 0.00 2.16 0.00 0.78 0.00 1.39 0.00 0.00 1.90 0.00 1.47 0.00 0.00 0.92 1.75 0.00 0.00 0.00 K intron_retention katanin-60 chr3R - chr3R_1054559_1055428 chr3R_1054558_1054559;chr3R_1055428_1055429 chr3R_1053999_1054558;chr3R_1055429_1055550 8.82 9.52 3.77 4.62 4.76 0.00 23.08 9.52 8.05 25.00 12.50 8.54 14.29 0.00 12.77 11.76 8.82 18.18 12.20 7.61 5.71 8.45 7.41 7.89 15.00 9.30 12.96 10.81 23.53 4.65 4.17 8.82 10.53 8.22 13.16 7.14 3.70 10.20 9.46 11.29 26.09 10.13 5.26 10.53 11.76 8.33 10.71 12.50 8.54 6.25 5.97 11.43 5.88 7.32 4.08 9.62 8.51 7.41 K alternative_acceptor CG14868,CG6136 chr3R - chr3R_11195671_11196040 chr3R_11195986_11196040 chr3R_11196041_11196089;chr3R_11195435_11195670 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 K intron_retention CG16971,CG33229,I_chr3L_225856_225909,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_224184_224972 chr3L_224183_224184;chr3L_224972_224973 chr3L_224174_224183;chr3L_224973_225140 11.83 11.83 13.36 64.25 9.95 10.84 8.70 7.75 8.10 9.91 6.40 7.94 8.63 7.25 9.73 21.26 7.21 6.59 8.13 5.81 6.24 8.37 23.64 23.53 18.75 23.50 45.95 34.21 24.48 10.18 7.58 15.33 10.73 9.15 15.74 53.85 10.45 15.49 13.90 9.49 18.92 7.27 11.31 12.02 15.45 13.38 20.00 7.58 10.50 23.94 28.57 14.17 13.27 29.41 6.87 20.31 27.12 12.60 K intron_retention CG31211 chr3R + chr3R_7776077_7776148 chr3R_7776076_7776077;chr3R_7776148_7776149 chr3R_7775411_7776076;chr3R_7776149_7776506 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 K intron_retention Galpha49B,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8505646_8505947 chr2R_8505645_8505646;chr2R_8505947_8505948 chr2R_8505492_8505645;chr2R_8505948_8505993 0.00 0.00 0.00 2.90 0.00 0.00 3.17 0.00 1.72 NA 0.00 2.33 0.00 0.00 0.00 2.74 0.00 0.00 0.00 0.00 0.00 NA 3.45 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 9.09 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 11.76 0.00 0.00 NA NA 2.33 0.00 6.67 0.00 K intron_retention CG12004 chr3L + chr3L_1573765_1573993 chr3L_1573764_1573765;chr3L_1573993_1573994 chr3L_1573680_1573764;chr3L_1573994_1574736 0.00 0.00 0.00 0.36 0.00 0.00 1.27 0.00 0.24 0.00 0.00 0.67 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG2017 chr3R - chr3R_1686127_1687468;chr3R_1686127_1687891;chr3R_1686127_1687510 chr3R_1686127_1688092 chr3R_1685454_1686126;chr3R_1688093_1688097 0.00 0.00 0.00 1.67 2.70 2.94 0.00 1.69 1.12 0.00 0.00 0.00 0.00 0.00 0.00 2.04 3.12 2.33 2.08 0.00 2.27 1.18 1.25 1.56 0.00 0.00 1.27 0.00 1.27 0.00 0.00 0.00 1.64 1.59 0.00 0.00 0.00 1.61 0.00 0.00 0.00 1.22 0.00 1.54 2.13 1.69 0.00 3.85 0.00 0.00 0.00 0.00 5.26 0.00 2.04 0.00 0.00 0.00 K jcn_only_AA Aats-gly,CG6854 chr3L + chr3L_15088286_15088373 chr3L_15088286_15088354 chr3L_15088282_15088285;chr3L_15088374_15090790 1.23 1.16 2.13 0.50 2.08 0.72 1.62 2.01 1.03 3.26 1.52 2.54 3.61 0.98 0.00 0.64 0.00 0.00 1.23 1.16 0.83 2.62 4.08 2.38 0.00 0.76 4.76 2.70 1.32 1.32 4.24 0.47 1.79 4.06 0.00 3.96 0.00 0.00 1.06 0.59 0.00 0.67 3.96 0.60 1.02 1.61 2.08 1.02 1.09 0.00 5.00 1.47 1.20 0.00 1.66 1.96 2.27 1.41 K alternative_acceptor CG40351 chr3LHet + chr3LHet_594695_594779;chr3LHet_594695_594765 chr3LHet_594695_594756 chr3LHet_594687_594694;chr3LHet_594780_595060 63.34 NA NA 81.82 NA NA NA 60.00 66.67 NA NA NA NA NA NA NA 57.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA K alternative_donor CG2258,I_chrX_7993647_7995101,I_chrX_7993647_7995119,I_chrX_7993650_7995126,I_chrX_7994188_7995101 chrX - chrX_7993650_7995101;chrX_7993650_7995119 chrX_7993650_7995978 chrX_7993643_7993649;chrX_7995979_7996028 20.00 20.00 20.00 0.00 20.00 25.00 20.00 27.27 11.11 NA 0.00 23.08 40.00 20.00 16.67 44.44 20.00 20.00 14.29 26.67 20.00 33.33 64.29 16.67 50.00 20.00 14.29 33.33 0.00 20.00 25.00 NA NA 27.27 33.33 0.00 40.00 50.00 33.33 40.00 20.00 11.11 20.00 0.00 NA 12.50 40.00 25.00 26.67 42.86 33.33 0.00 50.00 16.67 33.33 37.50 20.00 14.29 K intron_retention B4,I_chr2L_13547304_13549131 chr2L - chr2L_13506684_13508620 chr2L_13506683_13506684;chr2L_13508620_13508621 chr2L_13502543_13506683;chr2L_13508621_13509104 6.37 6.67 12.50 4.76 6.67 NA 11.11 5.26 0.00 0.00 NA 5.00 11.76 7.69 13.04 11.11 0.00 0.00 NA 0.00 NA 6.06 10.71 0.00 NA NA NA 13.79 NA NA NA NA 0.00 0.00 6.67 0.00 4.00 14.29 0.00 0.00 NA 5.26 NA 8.33 NA NA NA 0.00 15.00 12.50 7.69 14.29 NA NA NA NA NA 13.33 K alternative_acceptor CG2144 chr2R + chr2R_3409187_3409246 chr2R_3409187_3409225 chr2R_3408456_3409186;chr2R_3409247_3410051 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention I_chr2L_19388570_19389922,CG17544 chr2L - chr2L_19393657_19398346 chr2L_19393656_19393657;chr2L_19398346_19398347 chr2L_19393497_19393656;chr2L_19398347_19398401 8.93 7.14 3.70 8.57 13.33 13.64 11.54 9.09 10.53 8.33 12.50 7.78 14.29 3.64 6.38 11.70 13.79 4.17 4.65 8.93 5.00 25.00 10.87 10.42 18.75 5.41 27.27 10.53 15.79 5.56 4.84 5.26 7.89 9.23 7.55 11.43 15.62 13.51 9.76 7.48 6.35 10.26 2.56 10.17 3.23 4.62 6.25 4.50 7.08 12.00 14.58 15.15 11.11 0.00 11.48 7.32 6.82 4.65 K jcn_only_AA CG14619,RI_chrX_21860097_21868647,I_chrX_21865109_21865522,I_chrX_21869837_21869915 chrX + chrX_21867359_21868000 chrX_21867359_21867984 chrX_21867326_21867358;chrX_21868001_21868211 4.55 5.17 5.00 7.41 2.78 5.36 3.51 1.89 6.82 1.56 0.00 4.58 NA 3.57 2.22 4.76 NA 4.35 2.86 5.07 1.92 9.84 0.86 4.12 4.26 3.03 7.32 8.82 2.50 5.13 7.69 9.68 9.30 2.22 4.17 5.62 5.07 1.10 3.97 10.13 NA 5.74 7.14 5.26 1.82 3.70 6.38 4.55 4.96 6.00 5.13 2.22 4.69 0.00 0.00 3.51 0.00 4.55 K jcn_only_AD Sox14 chr2R + chr2R_19868269_19871066 chr2R_19868315_19871066 chr2R_19871067_19871533;chr2R_19867418_19868268 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.95 0.00 2.08 4.00 0.00 3.12 0.00 6.00 2.17 0.00 4.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 2.08 3.12 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 K intron_retention CG7920,I_chr3R_25837330_25837394 chr3R - chr3R_25837784_25840536 chr3R_25837783_25837784;chr3R_25840536_25840537 chr3R_25837391_25837783;chr3R_25840537_25840959 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.38 0.00 K intron_retention l(3)L1231 chr3R - chr3R_10471120_10471241 chr3R_10471119_10471120;chr3R_10471241_10471242 chr3R_10471018_10471119;chr3R_10471242_10472386 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor cmet chr2L - chr2L_11262421_11262485 chr2L_11262430_11262485 chr2L_11262486_11262560;chr2L_11262244_11262420 94.28 92.86 100.00 96.88 91.67 92.86 96.55 92.68 93.18 NA 93.33 95.00 100.00 93.33 85.71 95.45 93.33 94.12 91.18 98.18 93.75 100.00 100.00 100.00 NA 95.24 100.00 NA 93.33 94.74 90.91 94.12 96.00 92.16 92.86 100.00 94.44 90.91 90.00 94.44 93.75 100.00 100.00 100.00 94.44 88.24 96.30 95.24 97.92 94.12 100.00 100.00 100.00 91.67 89.29 88.89 83.33 83.87 K alternative_acceptor gig,I_chr3L_20128721_20128786 chr3L + chr3L_20128721_20128786 chr3L_20128721_20128777 chr3L_20128621_20128720;chr3L_20128787_20128886 100.00 100.00 NA 100.00 NA NA 91.67 91.67 100.00 NA NA 93.75 NA NA 100.00 87.50 100.00 NA NA 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 90.91 NA 100.00 100.00 100.00 100.00 100.00 NA 95.00 NA 93.75 NA NA NA NA 92.86 100.00 93.33 100.00 NA NA 100.00 100.00 100.00 NA K intron_retention CG2017 chr3R - chr3R_1685243_1685453 chr3R_1685242_1685243;chr3R_1685453_1685454 chr3R_1685182_1685242;chr3R_1685454_1686126 1.61 0.00 0.00 6.06 0.00 1.72 0.00 1.64 1.75 0.00 0.00 1.75 5.00 0.00 0.00 2.38 0.00 0.00 3.57 2.34 0.00 0.90 2.67 0.92 0.00 0.00 3.12 3.50 2.75 1.31 2.86 1.49 0.98 4.41 0.00 3.33 1.52 0.00 0.00 0.98 2.74 2.54 5.56 2.56 2.17 1.18 2.27 1.21 6.67 2.63 2.68 1.89 0.00 2.56 1.61 1.02 3.64 0.00 K cassette CG4896,REI_chr2L_1179197_1179859,I_chr2L_1191535_1191648 chr2L + chr2L_1179197_1179859 chr2L_1179197_1179451;chr2L_1179526_1179859 chr2L_1179452_1179525 chr2L_1179127_1179196;chr2L_1179860_1179937 63.07 71.43 72.22 34.62 69.23 64.29 46.15 52.17 66.67 44.44 50.00 64.00 80.00 77.78 57.89 90.48 57.14 71.43 56.25 65.38 77.78 73.33 65.38 50.00 53.33 53.85 81.82 92.31 73.33 66.67 43.18 77.78 52.94 61.54 69.23 13.04 44.12 75.00 64.00 71.88 38.46 64.29 41.18 59.09 63.64 66.67 58.33 52.38 54.29 69.23 60.71 81.82 62.50 55.56 60.00 52.94 NA 33.33 N intron_retention HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13164727_13165514 chrX_13164726_13164727;chrX_13165514_13165515 chrX_13165515_13165622 35.21 NA NA NA NA NA 43.75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 26.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor dwg,RI_chrX_2622297_2622355,RI_chrX_2622297_2622430,RI_chrX_2622435_2622577,RI_chrX_2627170_2627263 chrX + chrX_2622297_2622355;chrX_2622297_2622430 chrX_2622297_2622577 chrX_2622197_2622296;chrX_2622578_2622677 83.33 91.43 90.91 75.76 89.47 87.10 63.16 86.36 83.67 83.33 89.29 91.53 76.19 96.55 85.71 82.50 85.00 76.19 84.85 85.71 77.27 33.33 86.96 76.47 83.33 74.07 76.74 88.24 86.84 84.85 54.69 85.71 75.00 76.74 76.92 66.67 84.44 88.00 80.65 82.14 81.82 85.45 82.14 81.08 83.72 82.76 80.00 86.79 83.64 83.33 79.17 73.33 94.29 78.95 83.87 82.86 88.24 92.73 K intron_retention Orc4 chr2R - chr2R_20684564_20684623 chr2R_20684563_20684564;chr2R_20684623_20684624 chr2R_20683262_20684563;chr2R_20684624_20684907 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 1.69 8.33 0.00 0.00 3.92 0.00 0.00 0.00 1.39 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 3.61 0.00 0.00 3.85 0.00 0.00 0.00 0.00 4.82 1.39 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 2.22 K jcn_only_AD Rad17,RI_chr3R_10488039_10488120 chr3R - chr3R_10488039_10488124 chr3R_10488039_10488120 chr3R_10487939_10488038;chr3R_10488125_10488220 19.26 NA NA NA NA NA NA 25.00 25.00 NA NA 0.00 NA NA NA 12.50 NA NA 20.00 18.52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA K intron_retention Msp-300,I_chr2L_5197634_5197866 chr2L + chr2L_5196285_5197866 chr2L_5196284_5196285;chr2L_5197866_5197867 chr2L_5195979_5196284;chr2L_5197867_5197966 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.60 0.00 0.00 0.00 2.74 0.00 0.00 0.00 0.00 0.00 0.00 1.12 1.03 0.00 0.00 0.00 0.00 5.26 1.27 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 4.26 0.00 0.00 K jcn_only_AD mthl3 chr2R - chr2R_13338538_13338593;chr2R_13338538_13340067;chr2R_13338538_13339957;chr2R_13338538_13340007 chr2R_13338538_13340031 chr2R_13338407_13338537;chr2R_13340068_13340078 2.63 4.76 0.00 0.00 NA NA 6.45 6.00 4.08 NA 0.00 0.00 2.13 6.67 10.00 0.00 3.23 0.00 0.00 2.78 5.00 0.00 NA NA NA NA 0.00 NA NA NA 2.94 NA NA 2.00 3.85 NA NA NA NA NA NA 5.13 4.00 NA NA 0.00 NA 0.00 2.63 NA 0.00 NA NA NA 4.35 NA NA NA K jcn_only_AD CG10737 chr2R + chr2R_15062592_15063692;chr2R_15062814_15063692 chr2R_15062754_15063692 chr2R_15063693_15063852;chr2R_15062387_15062591 28.51 29.13 24.30 34.31 22.89 22.16 28.93 32.29 29.67 38.24 30.46 22.25 22.73 29.76 33.17 17.14 26.22 22.91 25.58 20.79 21.09 35.11 34.58 29.79 30.82 24.86 37.95 46.72 38.22 26.13 16.10 29.32 24.36 24.25 25.95 22.90 34.45 36.57 35.89 17.20 27.85 22.34 17.12 30.59 26.24 25.13 28.21 30.55 26.72 37.50 30.16 34.07 28.51 25.20 23.66 29.82 32.35 31.77 K alternative_donor CG42568,RI_chr2R_20046540_20046671,RI_chr2R_20046609_20046675,RI_chr2R_20046743_20046821 chr2R - chr2R_20046609_20046675;chr2R_20046609_20046671 chr2R_20046609_20046667 chr2R_20046509_20046608;chr2R_20046676_20046742 22.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette betaInt-nu chr2L + chr2L_21053362_21054993 chr2L_21053362_21053457;chr2L_21053645_21054993 chr2L_21053458_21053644 chr2L_21053285_21053361;chr2L_21054994_21055744 66.94 65.38 73.33 53.85 71.43 61.54 66.94 68.97 62.84 67.50 63.64 69.12 69.57 68.75 68.25 70.48 63.64 65.75 66.00 70.99 90.00 20.00 50.00 73.53 58.70 56.67 74.36 51.61 79.49 62.26 53.68 77.78 62.50 66.29 53.85 62.16 76.19 56.67 75.00 55.56 64.10 72.00 68.09 75.00 75.00 64.10 68.97 76.00 59.81 60.00 67.95 56.41 69.44 62.50 64.00 80.00 68.52 78.57 K jcn_only_AA sda,I_chr3R_22742285_22742350,RI_chr3R_22750984_22752737 chr3R + chr3R_22742285_22750355 chr3R_22742285_22742350 chr3R_22742270_22742284;chr3R_22750356_22750983 0.00 0.00 0.00 0.00 4.35 0.00 0.00 2.56 1.52 0.00 NA 0.00 NA 3.33 0.00 0.00 0.00 0.00 0.00 6.06 0.00 1.82 0.00 1.75 0.00 0.00 0.00 0.00 NA 3.57 0.00 NA 0.00 0.00 7.14 0.00 2.38 0.00 2.17 0.00 NA 0.00 3.70 0.00 NA 2.94 3.33 0.00 4.76 14.81 0.00 0.00 NA NA 3.23 8.00 3.70 NA K intron_retention CG13373,CG32817 chrX + chrX_371965_372045 chrX_371964_371965;chrX_372045_372046 chrX_371640_371964;chrX_372046_372227 10.82 NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA 15.38 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 6.25 NA K intron_retention CG31637 chr2L + chr2L_6499820_6525367 chr2L_6499819_6499820;chr2L_6525367_6525368 chr2L_6498604_6499819;chr2L_6525368_6525550 0.59 0.58 0.57 0.00 0.00 0.00 1.67 1.03 1.41 0.00 8.97 1.68 2.04 0.00 1.81 0.00 0.00 0.00 0.00 0.71 3.38 0.00 0.50 0.00 0.00 0.00 3.36 5.62 15.07 0.00 0.00 0.00 1.14 2.11 0.00 0.00 0.00 1.45 0.00 1.95 0.00 1.60 2.06 0.00 0.00 1.59 0.00 1.12 0.65 1.54 2.01 5.63 1.15 0.81 0.59 3.54 0.81 0.00 K intron_retention CG15362,CG7289 chr2L + chr2L_1981833_1981885 chr2L_1981832_1981833;chr2L_1981885_1981886 chr2L_1981642_1981832;chr2L_1981886_1982101 0.00 0.00 0.00 2.70 5.00 0.00 3.45 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 4.00 0.00 0.00 4.35 NA 0.00 4.76 NA 0.00 0.00 2.56 0.00 0.00 2.86 0.00 12.50 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.17 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG12773 chrX - chrX_1247232_1247288 chrX_1247232_1247285 chrX_1246687_1247231;chrX_1247289_1248009 100.00 100.00 100.00 100.00 97.50 100.00 100.00 98.18 98.86 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 93.62 100.00 100.00 100.00 100.00 100.00 96.08 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.81 98.44 96.23 100.00 98.90 98.31 98.67 100.00 100.00 98.91 97.14 100.00 98.08 100.00 100.00 100.00 98.46 100.00 98.48 97.37 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CE_chrX_20766225_20927825,CG1529,RI_chrX_20902550_20902613 chrX - chrX_20902550_20902613 chrX_20902549_20902550;chrX_20902613_20902614 chrX_20902450_20902549;chrX_20902614_20902713 6.25 0.00 0.00 13.64 5.56 0.00 7.69 21.43 10.00 4.76 0.00 9.68 NA 13.33 5.56 0.00 6.67 13.79 0.00 0.00 0.00 6.52 5.88 0.00 10.53 0.00 0.00 12.50 12.00 5.88 27.78 0.00 6.25 0.00 0.00 16.67 3.92 0.00 6.67 2.38 0.00 6.45 NA 7.69 0.00 14.29 13.33 8.33 7.69 16.67 8.33 10.53 0.00 10.53 0.00 9.09 0.00 10.00 K intron_retention CG17265,CG3542,CG17219,RFI_chr2L_3030576_3030666,GABPI chr2L + chr2L_3023344_3023404 chr2L_3023343_3023344;chr2L_3023404_3023405 chr2L_3023243_3023343;chr2L_3023405_3023794 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 96.00 94.44 100.00 100.00 95.00 100.00 96.77 100.00 97.14 97.22 100.00 100.00 97.83 100.00 97.87 100.00 95.65 100.00 93.33 96.55 100.00 95.92 96.43 97.78 100.00 100.00 100.00 100.00 96.55 100.00 100.00 K intron_retention CG8617 chr2R - chr2R_10244456_10244640 chr2R_10244455_10244456;chr2R_10244640_10244641 chr2R_10243215_10244455;chr2R_10244641_10244845 8.33 13.04 12.50 4.76 NA NA 0.00 13.33 6.25 10.53 14.29 6.25 NA NA NA 12.50 NA 7.14 NA 9.62 NA 28.33 3.70 6.67 0.00 NA 17.65 30.43 9.09 9.09 0.00 15.00 19.23 7.69 10.53 14.29 5.26 3.45 7.32 12.20 12.50 5.88 NA 10.53 19.23 5.41 6.67 17.39 8.33 3.45 4.35 14.29 9.38 0.00 4.35 6.25 5.71 5.71 K jcn_only_AD CG17508,RI_chr2R_1496995_1497120 chr2R + chr2R_1496288_1496517;chr2R_1496337_1496517;chr2R_1496303_1496517 chr2R_1496341_1496517 chr2R_1496518_1496994;chr2R_1496153_1496287 0.42 1.49 0.78 0.59 0.00 0.00 0.00 0.00 0.71 3.70 0.00 0.42 1.05 0.00 0.00 0.00 0.00 1.14 0.59 0.48 2.63 0.00 0.00 0.00 2.60 0.00 1.02 5.41 13.04 0.00 2.67 0.00 0.00 0.45 0.00 1.08 0.00 0.00 0.00 0.00 4.17 0.56 0.00 1.89 0.00 0.89 1.25 0.00 1.13 1.14 0.81 1.32 0.00 0.00 0.00 1.22 0.00 0.81 K alternative_acceptor CG30372,RI_chr2R_4012976_4013037 chr2R - chr2R_4004526_4004669 chr2R_4004610_4004669 chr2R_4004670_4004789;chr2R_4003772_4004525 85.19 96.15 73.08 90.00 71.43 89.47 66.67 77.42 86.00 78.95 100.00 86.84 83.33 94.44 76.92 84.00 87.50 88.46 85.19 84.78 92.86 82.93 86.27 89.19 82.76 85.19 89.29 94.12 81.82 83.33 90.00 82.35 93.33 86.21 85.71 81.25 92.31 87.50 87.50 76.47 84.62 82.93 92.86 96.55 80.95 96.15 92.59 60.87 83.72 86.67 79.17 81.48 84.62 81.48 77.78 82.14 88.89 93.33 K alternative_donor Top2,I_chr2L_19452310_19453250,I_chr2L_19452316_19452538,I_chr2L_19452794_19453250 chr2L - chr2L_19452316_19453250 chr2L_19452316_19452538 chr2L_19452216_19452315;chr2L_19453251_19453350 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.48 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor pAbp,I_chr2R_14027838_14028996 chr2R + chr2R_14028922_14028996;chr2R_14028460_14028996 chr2R_14028464_14028996 chr2R_14028997_14029096;chr2R_14028264_14028459 35.71 42.86 NA 46.67 60.00 42.86 22.22 44.44 16.67 NA NA 33.33 50.00 33.33 NA 23.08 28.57 25.00 14.29 30.77 NA 36.36 50.00 50.00 NA 20.00 23.08 36.36 33.33 NA 40.00 NA 46.15 40.00 NA NA 33.33 NA 14.29 60.00 NA 30.00 NA 35.71 NA NA NA 50.00 30.00 NA NA NA NA NA 0.00 NA 40.00 42.86 K alternative_acceptor oho23B,I_chr2L_2856176_2856244,I_chr2L_2856573_2856630,RI_chr2L_2856673_2856772 chr2L + chr2L_2856176_2856246;chr2L_2856176_2856222 chr2L_2856176_2856218 chr2L_2856076_2856175;chr2L_2856247_2856287 0.00 0.00 0.03 0.02 0.00 0.00 0.00 0.02 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.08 0.04 0.10 0.00 0.00 0.17 0.61 0.10 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.04 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.04 0.00 0.02 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.03 0.00 K intron_retention Csk,I_chr3R_7463337_7463512,I_chr3R_7468917_7472437,I_chr3R_7468917_7472509,I_chr3R_7468928_7472509 chr3R - chr3R_7463337_7475806 chr3R_7463336_7463337;chr3R_7475806_7475807 chr3R_7463237_7463336;chr3R_7475807_7476396 0.00 0.00 0.00 3.70 1.72 0.00 4.11 4.00 3.91 0.00 0.00 2.20 0.00 1.72 3.12 2.90 0.00 3.70 2.78 0.76 0.00 3.03 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 2.61 0.00 1.54 0.00 0.00 1.89 6.32 0.00 0.00 1.61 2.67 0.00 0.00 0.00 2.20 3.15 5.00 3.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Crk,RI_chr4_231302_233315,I_chr4_231307_232253 chr4 + chr4_231307_233253 chr4_231307_232479;chr4_232609_233253 chr4_232480_232608 chr4_231208_231306;chr4_233254_233355 88.89 95.24 86.96 77.27 86.67 82.35 89.36 90.38 92.73 88.89 93.33 85.42 88.89 91.67 88.46 91.11 86.96 100.00 89.47 90.91 100.00 92.31 86.96 94.44 69.23 68.18 90.91 100.00 42.31 85.00 96.00 89.47 96.00 88.89 72.22 93.75 87.50 87.50 91.67 93.10 68.97 88.10 85.71 79.17 53.33 82.22 100.00 81.08 85.00 90.48 100.00 86.67 93.33 87.50 96.30 92.59 94.74 70.77 K jcn_only_AA step chr2L - chr2L_21741933_21742074 chr2L_21742009_21742074 chr2L_21742075_21742280;chr2L_21741795_21741932 100.00 98.39 98.53 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.91 100.00 97.96 100.00 98.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.97 K intron_retention Eph,I_chr4_631523_634240,I_chr4_631555_631910,I_chr4_631643_631910,I_chr4_632065_634240,I_chr4_632433_632707,I_chr4_632433_632988,I_chr4_639690_640473,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_631523_631910 chr4_631522_631523;chr4_631910_631911 chr4_631455_631522;chr4_631911_632010 4.35 7.14 5.88 26.32 NA 16.67 5.71 6.06 4.08 NA NA 4.76 0.00 3.85 0.00 4.84 0.00 0.00 5.26 5.26 NA NA 10.53 0.00 NA 20.00 0.00 NA NA NA 4.35 NA NA 6.67 0.00 NA NA NA NA 0.00 NA 3.03 0.00 22.22 NA NA NA 0.00 2.50 NA 0.00 NA NA NA 4.76 NA NA NA K intron_retention CG32521,I_chrX_21077138_21082106,I_chrX_21077612_21082713,EI_chrX_21080561_21082106,I_chrX_21080906_21082713,CREF_chrX_21082827_21152068,EF_chrX_21094675_21152068 chrX - chrX_21077612_21082106 chrX_21077611_21077612;chrX_21082106_21082107 chrX_21077512_21077611;chrX_21082107_21082206 4.91 3.59 7.20 3.42 3.82 5.71 23.40 4.14 6.65 5.00 8.05 7.46 2.47 6.14 5.23 12.35 8.27 11.90 10.81 4.02 24.24 2.86 4.56 6.33 5.10 2.90 4.02 6.47 6.41 4.78 5.13 4.79 3.14 5.77 3.57 3.78 4.60 5.22 4.91 8.12 4.38 4.47 7.69 8.38 3.35 4.46 3.93 7.02 5.86 3.72 5.29 3.54 2.45 4.81 5.35 2.42 4.19 3.31 K alternative_donor noncoding_7598,snoRNA:Me28S-A3407a chr2R + chr2R_13586950_13587362 chr2R_13586955_13587362 chr2R_13587363_13587402;chr2R_13586856_13586949 66.67 NA 50.00 63.16 NA NA 80.00 84.62 58.33 NA NA 66.67 NA 75.00 NA 63.33 NA NA 69.23 69.23 NA NA NA 63.64 50.00 NA 63.64 NA NA NA 62.00 NA NA 64.29 80.00 66.67 NA NA NA NA NA 69.23 77.78 NA NA 60.00 NA NA 55.88 85.71 85.71 NA NA NA NA 66.67 76.92 NA K cassette Eb1,RI_chr2R_2640290_2642206,I_chr2R_2640494_2642206,I_chr2R_2642491_2642549 chr2R + chr2R_2640290_2642206 chr2R_2640290_2640353;chr2R_2640494_2642206 chr2R_2640354_2640493 chr2R_2640190_2640289;chr2R_2642207_2642306 98.53 98.44 100.00 95.24 98.31 100.00 98.91 95.76 99.43 96.88 97.96 98.97 100.00 98.15 96.88 98.91 100.00 98.31 98.53 99.07 100.00 97.06 98.82 98.65 100.00 96.49 98.51 96.30 93.10 96.77 98.65 100.00 94.74 100.00 100.00 96.97 98.48 100.00 98.77 98.36 100.00 99.16 100.00 98.46 95.65 95.12 100.00 96.15 99.22 98.51 100.00 98.41 97.30 97.44 100.00 98.33 100.00 100.00 K intron_retention Ide,I_chr3L_20366301_20366354,I_chr3L_20368443_20368519 chr3L - chr3L_20368655_20368717 chr3L_20368654_20368655;chr3L_20368717_20368718 chr3L_20368520_20368654;chr3L_20368718_20368931 15.27 20.00 12.50 21.43 6.25 8.82 12.68 12.68 14.29 9.09 11.11 16.36 10.00 8.57 13.33 14.81 11.43 15.15 16.28 13.04 12.12 50.00 16.07 15.56 33.33 25.81 16.67 22.73 50.00 10.81 17.86 12.50 14.71 15.38 24.14 78.95 19.51 14.63 11.63 20.45 17.65 17.19 16.67 13.04 NA 17.24 16.00 19.51 19.05 18.92 17.74 13.64 13.33 33.33 12.20 12.82 12.12 10.00 K intron_retention CG3091,I_chrX_2147635_2147990 chrX - chrX_2146894_2146948 chrX_2146893_2146894;chrX_2146948_2146949 chrX_2146757_2146893;chrX_2146949_2147281 3.01 2.67 4.29 10.91 1.59 5.26 7.79 6.09 5.46 0.00 2.63 3.88 7.14 6.56 3.12 5.68 6.41 2.78 5.48 1.24 4.17 2.27 3.57 3.39 0.00 8.89 12.50 NA 0.00 0.00 4.00 5.71 0.00 1.89 0.00 0.00 5.19 0.00 2.04 7.02 0.00 6.10 0.00 0.00 2.00 2.22 0.00 0.00 3.85 5.13 3.70 5.00 0.00 2.90 1.05 3.30 2.70 0.00 K jcn_only_AD tsr,I_chr2R_19932706_19933121 chr2R - chr2R_19932706_19934188 chr2R_19932706_19933121 chr2R_19932606_19932705;chr2R_19934189_19934352 0.04 0.09 0.04 0.07 0.00 0.00 0.03 0.06 0.05 0.08 0.05 0.02 0.00 0.00 0.00 0.04 0.00 0.05 0.04 0.02 0.05 0.00 0.07 0.00 0.00 0.05 0.10 0.06 0.13 0.04 0.09 0.04 0.04 0.00 0.04 0.03 0.06 0.00 0.11 0.03 0.14 0.05 0.05 0.12 0.11 0.02 0.02 0.03 0.06 0.15 0.10 0.00 0.00 0.02 0.07 0.04 0.00 0.00 K alternative_acceptor CG11155,I_chr4_1151213_1151903,I_chr4_1152220_1152710,I_chr4_1152585_1152687 chr4 + chr4_1154699_1155719 chr4_1154699_1154777 chr4_1154501_1154698;chr4_1155720_1155720 18.18 25.00 NA 33.33 NA NA 10.00 25.00 15.38 NA NA 18.18 NA 28.57 NA 10.53 NA NA 11.11 16.67 NA NA NA NA NA NA NA NA NA NA 28.57 NA NA 14.29 NA 33.33 NA NA NA NA NA 18.18 NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA K multi_cassette Pk61C,CE_chr3L_129889_141769,I_chr3L_132531_133824,I_chr3L_133962_134014,I_chr3L_136336_137121,I_chr3L_136336_141563 chr3L + chr3L_129889_141769 chr3L_129889_135457;chr3L_135843_135966;chr3L_136336_141563;chr3L_141692_141769 chr3L_135458_135842;chr3L_135967_136335;chr3L_141564_141691 chr3L_129840_129888;chr3L_141770_141837 100.00 96.88 100.00 97.44 95.45 86.21 97.50 97.44 98.44 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 95.00 95.45 98.85 95.65 100.00 97.87 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 96.77 97.67 100.00 100.00 100.00 100.00 97.62 98.67 100.00 98.31 100.00 97.37 100.00 100.00 100.00 100.00 98.04 92.86 100.00 95.83 100.00 100.00 95.83 100.00 100.00 100.00 K intron_retention pAbp,I_chr2R_14027838_14028996 chr2R + chr2R_14032780_14032846 chr2R_14032779_14032780;chr2R_14032846_14032847 chr2R_14032472_14032779;chr2R_14032847_14034632 0.00 0.00 0.00 0.25 0.00 0.30 0.00 0.24 0.28 0.00 0.00 0.37 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.94 0.32 0.25 0.00 0.00 0.48 0.96 0.00 0.00 0.40 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.21 0.00 0.00 0.28 0.00 0.00 0.29 0.00 0.49 0.00 0.00 0.00 0.39 0.00 0.00 0.00 K alternative_donor Gs1l,I_chr2L_4456517_4456723,I_chr2L_4458058_4458120 chr2L - chr2L_4456521_4456723;chr2L_4456521_4456719 chr2L_4456521_4456725 chr2L_4456386_4456520;chr2L_4456726_4456801 40.00 25.00 44.44 38.89 40.00 44.44 25.00 23.53 43.24 NA 40.00 26.32 25.00 50.00 35.71 40.00 41.67 20.00 50.00 43.75 40.00 NA 55.56 50.00 14.29 33.33 40.00 NA 30.00 NA 21.05 33.33 50.00 44.00 NA 40.00 55.56 NA 30.77 47.37 64.71 28.00 40.00 43.75 38.89 47.06 NA 66.67 16.67 NA NA 25.00 NA 50.00 30.77 50.00 53.85 62.50 K alternative_acceptor CG8677 chr2L + chr2L_21223128_21223191 chr2L_21223128_21223170 chr2L_21222678_21223127;chr2L_21223192_21224563 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.17 0.00 5.26 NA 0.00 5.26 4.35 0.00 0.00 0.00 0.00 7.14 0.00 NA 2.56 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.92 0.00 NA 0.00 0.00 0.00 0.00 NA 2.56 0.00 0.00 NA 0.00 NA 2.94 0.00 NA 4.35 0.00 NA NA 0.00 NA NA NA K intron_retention CG10077,I_chr3L_6946805_6946872 chr3L - chr3L_6944303_6944366 chr3L_6944302_6944303;chr3L_6944366_6944367 chr3L_6942613_6944302;chr3L_6944367_6944545 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.81 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27044867;chr3R_27044771_27045188;chr3R_27044771_27045257;chr3R_27044771_27045132;chr3R_27044771_27045027;chr3R_27044771_27045110;chr3R_27044771_27044831;chr3R_27044771_27044990 chr3R_27044771_27044895 chr3R_27044671_27044770;chr3R_27045258_27045273 2.63 1.90 2.09 1.59 0.89 1.62 2.16 1.42 2.11 8.33 1.95 1.72 2.63 2.08 1.47 3.02 2.51 0.75 1.20 2.34 2.97 1.55 24.00 25.45 20.83 2.67 22.50 9.52 2.96 5.44 1.56 1.70 3.41 0.81 11.39 5.88 19.74 20.00 14.52 2.95 3.87 1.32 1.56 1.27 1.52 4.42 18.18 3.63 1.60 21.28 14.71 20.83 2.49 21.88 1.59 16.07 18.95 0.36 K alternative_donor CG3558,RI_chr2L_2995071_2997790 chr2L + chr2L_2993464_2993544;chr2L_2993410_2993544;chr2L_2993444_2993544 chr2L_2993378_2993544 chr2L_2993545_2994408;chr2L_2993028_2993377 92.64 95.35 88.46 91.46 91.43 92.68 96.00 94.44 93.28 93.33 90.48 94.05 92.45 92.73 87.76 96.70 93.48 92.31 95.16 91.09 91.67 88.06 86.00 90.48 100.00 92.59 81.08 95.24 75.00 94.29 95.92 92.00 94.19 95.41 92.59 90.48 85.71 87.50 91.43 94.95 96.72 88.66 89.74 87.69 92.50 94.94 93.75 94.66 93.20 96.43 88.37 93.94 82.14 NA 89.83 100.00 96.00 95.04 K intron_retention NijA chr3L - chr3L_10688468_10688728 chr3L_10688467_10688468;chr3L_10688728_10688729 chr3L_10688432_10688467;chr3L_10688729_10688804 52.63 57.14 48.00 45.95 46.15 52.63 56.25 66.67 48.78 NA NA 51.85 NA 53.33 62.96 64.52 52.17 47.83 62.96 56.76 66.67 21.15 75.00 52.78 44.44 52.94 54.05 47.06 47.62 50.00 48.48 33.33 41.38 48.72 46.34 52.63 36.67 45.45 57.58 34.15 36.36 68.42 56.25 46.15 42.50 56.90 53.85 43.40 57.14 45.45 57.58 47.83 73.68 69.57 60.87 60.00 57.14 55.36 K jcn_only_AD CaMKI,I_chr4_466377_467256,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,RI_chr4_467374_467424,RI_chr4_467482_467543,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_467378_467446;chr4_467374_467446 chr4_467273_467446 chr4_467447_467481;chr4_467266_467272 2.35 NA NA NA NA NA 0.00 0.00 6.00 NA NA NA 0.00 4.55 NA 2.44 NA NA 0.00 2.27 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 2.70 NA NA NA NA NA 4.17 NA 3.45 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA 3.85 NA 4.35 NA K intron_retention nimC1,I_chr2L_13975880_13975977 chr2L - chr2L_13975880_13975977 chr2L_13975879_13975880;chr2L_13975977_13975978 chr2L_13975780_13975879;chr2L_13975978_13976066 0.00 NA 0.00 0.00 NA 0.00 5.26 0.00 5.26 NA 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA 5.71 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 4.65 NA NA NA NA NA 4.35 NA NA NA K alternative_acceptor borr chr2L - chr2L_9252339_9252634 chr2L_9252351_9252634 chr2L_9252635_9253116;chr2L_9251942_9252338 81.48 76.60 77.78 67.86 93.33 93.33 84.62 73.33 84.85 82.35 NA 87.88 100.00 90.91 92.86 90.91 91.67 100.00 72.73 86.67 91.67 88.46 74.58 78.69 80.56 75.00 81.25 94.12 80.95 83.33 100.00 84.62 57.89 90.91 81.48 81.48 82.54 78.72 76.27 72.09 94.44 77.78 90.00 76.47 64.52 80.56 68.00 80.95 86.67 91.11 70.73 72.73 75.68 84.00 94.12 78.57 72.22 75.00 K intron_retention pix,I_chr3L_8967436_8967756 chr3L - chr3L_8965728_8965784 chr3L_8965727_8965728;chr3L_8965784_8965785 chr3L_8965146_8965727;chr3L_8965785_8966482 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.89 0.33 0.00 0.00 0.17 0.00 0.40 0.00 0.00 0.00 0.00 0.28 0.29 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.62 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.43 0.34 0.00 0.68 1.60 0.00 0.00 0.20 0.00 0.61 0.99 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 K jcn_only_AA l(2)NC136,I_chr2R_1545723_1546024 chr2R - chr2R_1545081_1545147;chr2R_1545087_1545147 chr2R_1545003_1545147 chr2R_1545148_1545722;chr2R_1544877_1545002 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.71 0.00 0.71 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 1.77 1.37 0.85 0.00 0.00 0.44 0.68 0.00 0.00 0.00 1.37 0.00 0.00 0.00 1.09 K intron_retention CG34394,I_chr2L_3365674_3365965 chr2L - chr2L_3361444_3362415 chr2L_3361443_3361444;chr2L_3362415_3362416 chr2L_3360996_3361443;chr2L_3362416_3362718 44.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 44.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG8461 chr3R - chr3R_10339143_10339203 chr3R_10339142_10339143;chr3R_10339203_10339204 chr3R_10338605_10339142;chr3R_10339204_10339362 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA 26.32 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 NA K intron_retention Hexo1,F_chr3L_4292778_4292830 chr3L + chr3L_4289172_4289245 chr3L_4289171_4289172;chr3L_4289245_4289246 chr3L_4289050_4289171;chr3L_4289246_4289880 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 10.53 4.65 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045275_16045854;chr3L_16045275_16046111 chr3L_16045275_16046104 chr3L_16045255_16045274;chr3L_16046112_16046204 80.65 85.00 74.07 77.14 NA 95.45 78.57 94.12 79.37 NA 87.50 79.17 80.65 86.21 70.00 83.33 75.00 71.43 86.67 75.00 95.65 NA 85.19 85.00 NA 72.22 NA NA 85.19 NA 75.00 NA 83.33 82.00 NA 65.38 76.19 NA NA 96.00 NA 81.25 71.43 77.27 NA 80.00 NA 77.14 93.88 NA NA NA NA NA 89.19 NA NA NA K multi_cassette pyd,I_chr3R_4654041_4664113,I_chr3R_4749124_4756437 chr3R - chr3R_4654041_4664113 chr3R_4654041_4654556;chr3R_4656728_4657863;chr3R_4657997_4658075;chr3R_4658368_4658425;chr3R_4658667_4659696;chr3R_4659797_4659860;chr3R_4660010_4660078;chr3R_4660672_4660998;chr3R_4661233_4664113 chr3R_4654557_4656727;chr3R_4657864_4657996;chr3R_4658076_4658367;chr3R_4658426_4658666;chr3R_4659697_4659796;chr3R_4659861_4660009;chr3R_4660079_4660671;chr3R_4660999_4661232 chr3R_4653941_4654040;chr3R_4664114_4664213 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_donor noncoding_4622,CE_chr2R_2237053_2237111 chr2R - chr2R_2237036_2237090;chr2R_2237036_2237093 chr2R_2237036_2237086 chr2R_2236997_2237035;chr2R_2237094_2237159 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3838 chr2L + chr2L_9569199_9571476 chr2L_9569198_9569199;chr2L_9571476_9571477 chr2L_9568769_9569198;chr2L_9571477_9571753 0.00 0.00 0.00 3.23 NA NA 0.00 0.00 4.44 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 5.71 0.00 0.00 8.70 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG6729,I_chr2L_10742536_10742692,I_chr2L_10743767_10743821,E_chr2L_10745700_10745781,I_chr2L_10753685_10755903 chr2L - chr2L_10743767_10743821 chr2L_10743771_10743821 chr2L_10743822_10743872;chr2L_10743667_10743766 100.00 94.12 100.00 94.44 100.00 100.00 93.75 100.00 100.00 87.50 100.00 91.67 100.00 88.89 91.67 88.89 100.00 92.31 100.00 100.00 88.89 95.24 96.55 95.24 100.00 100.00 100.00 95.83 90.00 100.00 66.67 100.00 100.00 100.00 88.89 100.00 97.30 100.00 96.00 100.00 NA 100.00 87.50 100.00 NA NA 93.33 NA 100.00 92.86 90.48 90.00 100.00 100.00 100.00 93.33 100.00 NA K intron_retention l(2)05714,I_chr2L_4970785_4973718,RI_chr2L_4971343_4973718,CG8892 chr2L - chr2L_4971323_4973718 chr2L_4971322_4971323;chr2L_4973718_4973719 chr2L_4971243_4971322;chr2L_4973719_4973787 93.75 NA 70.00 100.00 100.00 NA 100.00 94.44 81.82 NA NA 100.00 100.00 100.00 90.00 96.00 NA 90.91 NA 94.74 90.00 NA 92.86 92.86 NA 88.89 90.00 100.00 NA 87.50 93.75 NA NA 78.57 88.89 NA NA NA NA 81.82 NA 94.12 NA NA NA 100.00 100.00 NA 94.74 100.00 88.89 NA NA 90.00 90.91 93.33 100.00 100.00 K jcn_only_AD eIF-1A,I_chr3R_14106104_14107415,I_chr3R_14106955_14107415 chr3R + chr3R_14100864_14107415;chr3R_14106955_14107415 chr3R_14106104_14107415 chr3R_14107416_14107515;chr3R_14100759_14100863 0.17 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.08 0.23 0.00 0.17 0.00 0.36 0.70 0.00 0.00 0.00 0.28 0.48 0.18 0.00 0.00 0.00 0.22 0.31 0.00 0.80 0.71 0.24 0.89 0.00 0.33 0.00 0.54 0.00 0.13 0.77 0.24 0.50 0.23 0.09 0.19 0.33 0.00 0.31 0.17 0.41 0.27 0.00 0.41 0.30 0.00 0.00 0.38 0.00 0.17 0.30 K intron_retention vlc chr2R + chr2R_1589894_1590371 chr2R_1589893_1589894;chr2R_1590371_1590372 chr2R_1589884_1589893;chr2R_1590372_1590451 54.55 NA 54.55 56.25 NA NA 41.18 42.11 73.33 NA 63.64 58.82 54.55 70.00 NA 60.87 NA 95.45 50.00 53.85 53.85 55.56 57.14 NA NA NA NA NA 41.67 NA NA NA NA 63.64 NA NA 46.15 NA NA 47.62 NA 45.00 NA 50.00 NA 42.86 NA 68.75 73.68 NA 60.00 60.00 NA NA 50.00 NA NA 33.33 K alternative_donor mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818607_7818970 chr3R_7818607_7818853 chr3R_7818507_7818606;chr3R_7818971_7818995 62.50 NA 45.45 60.00 NA NA 59.09 68.42 64.71 NA 83.33 62.50 66.67 60.00 54.55 77.78 69.23 NA 56.25 92.31 NA NA 71.43 NA NA NA NA 62.50 83.33 NA 72.73 NA NA 73.33 NA NA NA NA NA 41.67 NA 62.50 58.33 NA NA 85.71 NA 62.50 60.87 55.56 62.50 NA NA NA 69.23 NA NA 87.50 K cassette sw chrX - chrX_20101692_20104496;chrX_20101668_20104496;chrX_20101671_20105848;chrX_20101671_20104496 chrX_20101671_20103190,chrX_20101692_20103190,chrX_20101668_20103190;chrX_20103239_20104496,chrX_20103239_20105848 chrX_20103191_20103238 chrX_20101619_20101667;chrX_20105849_20105976 26.09 19.05 22.73 38.46 26.67 36.36 26.32 23.53 29.73 56.25 35.71 31.82 14.29 33.33 23.08 26.32 30.00 46.15 20.00 19.35 28.57 31.43 26.09 17.39 13.33 31.58 17.86 17.65 10.71 21.21 21.74 29.41 27.03 25.93 33.33 12.50 17.65 17.39 21.05 22.45 32.00 22.58 22.22 22.22 18.18 24.14 28.00 41.38 30.30 19.05 28.00 27.78 26.09 31.25 28.57 18.18 33.33 37.50 K intron_retention AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9008806_9008870 chrX_9008805_9008806;chrX_9008870_9008871 chrX_9008667_9008805;chrX_9008871_9009159 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL7A,I_chrX_6426455_6427156,I_chrX_6426579_6427002 chrX - chrX_6426579_6427156 chrX_6426578_6426579;chrX_6427156_6427157 chrX_6426523_6426578;chrX_6427157_6427194 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.03 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.40 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Sec16,I_chrX_12501913_12502010,I_chrX_12502899_12502973 chrX + chrX_12502899_12502970;chrX_12502899_12502967 chrX_12502899_12502973 chrX_12502799_12502898;chrX_12502974_12503073 0.68 3.85 1.56 1.90 0.00 0.00 0.00 1.06 0.00 1.54 0.00 0.00 1.89 0.00 2.94 1.03 0.00 0.00 0.00 3.31 0.00 1.33 0.00 0.00 0.00 4.35 0.00 0.00 2.63 1.10 1.85 1.25 0.83 0.93 0.00 1.92 0.00 0.00 0.00 1.23 1.16 3.36 0.00 1.37 0.98 0.68 0.00 2.00 0.91 0.00 0.00 0.00 2.86 0.00 1.16 1.69 0.00 0.00 K intron_retention CG30193,CG30190 chr2R + chr2R_18813008_18813071 chr2R_18813007_18813008;chr2R_18813071_18813072 chr2R_18812998_18813007;chr2R_18813072_18813135 80.43 78.95 75.00 71.70 86.96 86.96 83.33 69.23 87.67 81.82 90.91 86.54 87.50 82.76 95.83 80.43 73.08 96.15 91.67 89.74 95.24 84.85 72.73 58.62 100.00 87.88 80.95 71.43 94.12 70.83 79.49 75.00 75.00 77.78 79.17 84.62 80.00 66.67 75.00 83.87 94.74 84.31 82.14 82.61 94.74 78.79 80.00 96.43 80.00 74.07 78.26 66.67 78.57 76.47 75.00 80.00 62.50 96.00 K alternative_last_exon Ac76E,I_chr3L_19966672_19966735 chr3L + chr3L_19968576_19969190 chr3L_19968576_19968698 chr3L_19969191_19969433 chr3L_19968699_19968767 chr3L_19968471_19968575 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA NA K jcn_only_AA CG4699 chr3R + chr3R_11624200_11624445 chr3R_11624200_11624442 chr3R_11623809_11624199;chr3R_11624446_11624758 82.37 78.67 80.56 80.00 NA 86.21 71.43 84.31 77.01 81.82 83.33 86.90 73.53 78.79 87.23 84.09 89.66 77.78 78.57 81.73 66.67 84.47 78.71 77.27 82.35 79.55 81.54 80.00 83.46 82.39 85.37 70.83 83.62 83.33 82.93 81.44 83.54 82.54 83.33 87.50 79.76 75.00 92.11 77.48 89.71 78.82 84.48 84.75 78.67 82.50 83.45 79.17 78.57 83.13 76.47 82.65 87.69 86.08 K intron_retention CG5044,I_chr3R_11188256_11188309 chr3R + chr3R_11184530_11184787 chr3R_11184529_11184530;chr3R_11184787_11184788 chr3R_11184261_11184529;chr3R_11184788_11184982 98.36 100.00 100.00 95.60 97.06 94.44 98.82 97.09 99.10 94.74 100.00 100.00 98.33 97.83 95.74 100.00 100.00 97.44 98.11 99.09 100.00 97.62 100.00 98.31 97.67 100.00 98.57 96.00 100.00 97.78 97.56 100.00 98.28 100.00 100.00 100.00 98.15 100.00 96.36 100.00 100.00 98.78 97.56 98.18 97.37 98.53 98.21 96.55 96.39 98.39 98.46 100.00 96.55 96.77 100.00 98.36 98.41 97.44 K intron_retention CG8790 chr3R + chr3R_9190952_9193460 chr3R_9190951_9190952;chr3R_9193460_9193461 chr3R_9190661_9190951;chr3R_9193461_9193883 0.00 0.00 0.00 2.70 0.00 0.00 3.39 3.54 0.91 0.00 6.25 3.91 1.67 0.00 0.00 1.06 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 2.78 1.67 0.00 0.93 1.89 0.00 0.95 0.00 0.00 0.00 2.90 1.97 0.00 0.00 0.00 1.87 0.00 2.70 2.65 2.60 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA bwa,I_chr2L_20069515_20073377,I_chr2L_20073310_20073377 chr2L + chr2L_20069515_20073377 chr2L_20069515_20072353 chr2L_20069415_20069514;chr2L_20073378_20073477 98.44 100.00 96.43 87.60 100.00 100.00 98.35 93.46 98.87 98.57 97.01 96.53 100.00 96.10 94.87 100.00 97.14 94.44 93.55 99.06 98.46 97.88 98.44 97.54 100.00 95.12 98.15 99.07 99.02 100.00 97.01 98.18 98.31 98.25 98.46 91.36 99.17 98.88 98.52 99.34 98.75 99.43 98.04 98.98 98.02 96.83 99.23 97.00 98.66 98.66 100.00 97.06 100.00 98.94 96.39 97.85 98.29 100.00 K intron_retention RpL10Ab,snoRNA:Psi18S-920 chr3L + chr3L_11815991_11816299 chr3L_11815990_11815991;chr3L_11816299_11816300 chr3L_11815955_11815990;chr3L_11816300_11816370 0.32 0.38 0.00 0.25 0.00 0.39 0.33 0.28 0.63 0.36 0.38 0.52 0.83 1.01 0.40 0.35 0.16 0.45 0.10 0.19 0.00 0.14 3.49 3.90 5.56 0.24 23.53 1.91 0.00 0.00 0.13 0.12 0.00 0.17 1.16 0.83 2.00 3.12 6.00 0.06 0.12 0.49 0.31 0.00 0.04 0.20 0.00 0.00 0.33 6.67 7.58 0.00 0.14 NA 0.18 3.57 4.60 0.06 K jcn_only_AD CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_239007_239078 chr4_239007_239071 chr4_238874_239006;chr4_239079_239137 97.62 100.00 97.30 97.48 95.12 98.59 97.93 97.32 97.63 95.83 98.04 98.13 98.98 94.00 97.41 97.73 100.00 98.28 94.90 96.95 98.08 96.30 95.70 97.26 93.62 97.62 96.47 97.30 91.38 92.77 96.79 98.36 96.72 98.25 98.91 100.00 98.36 96.72 100.00 99.20 95.40 98.56 96.20 96.61 98.46 96.79 100.00 100.00 98.43 97.87 99.34 100.00 96.00 96.97 97.52 98.97 96.53 97.72 K intron_retention Phm,RI_chr2R_19875078_19875636 chr2R - chr2R_19873918_19874859 chr2R_19873917_19873918;chr2R_19874859_19874860 chr2R_19873785_19873917;chr2R_19874860_19874932 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.66 0.00 2.04 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Trf2,I_chrX_8318346_8318408 chrX + chrX_8303398_8304309 chrX_8303397_8303398;chrX_8304309_8304310 chrX_8303319_8303397;chrX_8304310_8304722 83.01 58.33 63.64 75.00 NA 91.67 61.29 73.08 72.73 NA NA 80.77 64.29 61.11 84.62 57.58 69.23 60.00 85.00 80.00 NA 57.14 93.33 88.89 NA 81.82 NA NA 91.67 NA 91.67 100.00 80.00 66.67 87.50 90.00 NA NA 90.00 95.00 63.64 79.41 75.00 55.00 100.00 94.44 100.00 86.36 70.97 84.62 NA 75.00 90.00 100.00 84.21 92.86 94.74 90.00 K intron_retention CG40351,CREFI_chr3LHet_606442_607073 chr3LHet + chr3LHet_600124_600179 chr3LHet_600123_600124;chr3LHet_600179_600180 chr3LHet_599490_600123;chr3LHet_600180_600636 0.00 0.00 0.00 33.33 NA NA 5.26 4.55 12.20 NA NA 12.90 0.00 NA NA 6.25 0.00 NA 5.56 7.69 NA NA 7.41 NA 0.00 NA 4.17 8.33 NA 0.00 NA 7.69 NA 0.00 NA 6.67 0.00 NA NA 5.00 0.00 0.00 NA 7.41 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA K alternative_acceptor CG42533,F_chr2L_7476906_7476978 chr2L - chr2L_7480324_7480560 chr2L_7480327_7480560 chr2L_7480561_7480896;chr2L_7478851_7480323 72.65 85.71 73.33 73.08 NA 53.85 60.87 73.08 78.12 70.00 NA 83.33 71.43 73.33 86.67 88.89 90.91 72.22 84.62 71.05 61.54 72.22 80.95 65.00 90.91 66.67 65.00 88.89 60.00 76.92 61.11 NA 68.75 68.00 73.33 88.89 69.57 88.89 81.25 75.00 NA 75.86 90.91 64.71 NA 66.67 NA 70.59 62.16 60.00 83.33 69.23 NA NA 60.87 NA NA NA K alternative_acceptor Gap1 chr3L - chr3L_9833423_9833611 chr3L_9833437_9833611 chr3L_9833612_9834663;chr3L_9832217_9833422 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA K intron_retention CG42382,Rme-8 chr2R - chr2R_5054825_5054882 chr2R_5054824_5054825;chr2R_5054882_5054883 chr2R_5054127_5054824;chr2R_5054883_5054973 28.57 NA NA NA NA NA 28.57 33.33 14.29 NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA 57.14 NA NA NA NA NA NA NA NA 31.25 33.33 NA NA 0.00 NA NA NA 15.38 NA NA NA NA NA NA NA 0.00 NA 50.00 K alternative_acceptor CG17078 chr2L - chr2L_276898_276958 chr2L_276904_276958 chr2L_276959_277212;chr2L_276739_276897 100.00 100.00 91.67 94.44 100.00 90.00 93.33 100.00 96.77 NA 100.00 100.00 100.00 100.00 100.00 100.00 90.91 91.67 92.31 100.00 91.67 100.00 100.00 90.91 NA 100.00 93.33 100.00 100.00 93.33 100.00 100.00 96.55 94.12 90.00 100.00 100.00 NA 92.86 95.00 92.31 100.00 100.00 100.00 93.33 90.91 NA 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 K alternative_donor fwd,RI_chr3L_319514_319746 chr3L - chr3L_314318_319746 chr3L_314318_318990 chr3L_313024_314317;chr3L_319747_319846 62.96 53.57 77.42 60.98 65.22 65.38 69.57 69.84 63.77 51.85 47.06 66.07 63.33 61.29 62.96 49.15 60.00 56.00 59.52 63.77 54.17 67.57 57.14 70.00 70.00 88.24 57.89 38.46 60.87 44.44 47.50 72.73 46.34 60.00 54.29 76.19 68.18 58.82 76.47 64.15 80.00 66.67 75.00 60.00 83.33 73.33 40.00 73.53 59.42 50.00 61.36 65.52 66.67 83.33 62.22 64.29 60.00 46.67 K alternative_donor sar1,I_chr3R_18185148_18185246 chr3R + chr3R_18182521_18183252;chr3R_18182490_18183252;chr3R_18182467_18183252 chr3R_18182472_18183252 chr3R_18183253_18183393;chr3R_18182460_18182466 84.31 86.57 82.17 86.23 77.91 81.91 84.14 83.51 83.48 92.31 84.21 82.11 84.62 84.88 87.79 83.68 86.75 88.54 80.26 85.95 83.33 87.10 82.76 88.64 76.92 84.91 79.49 84.00 84.85 75.76 80.00 86.79 85.42 80.11 86.49 82.86 87.27 88.24 92.19 84.31 81.82 85.57 89.13 80.28 83.33 83.10 84.06 74.47 86.81 93.18 83.87 82.22 83.93 85.71 85.62 87.80 87.95 86.49 K alternative_donor CG11309,I_chr3L_21297192_21297708 chr3L - chr3L_21297192_21297389;chr3L_21297192_21297487 chr3L_21297192_21297542 chr3L_21297092_21297191;chr3L_21297543_21297554 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.67 NA 0.00 NA NA 0.00 0.00 11.11 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 20.00 NA NA 0.00 NA 0.00 8.33 20.00 NA NA NA NA 0.00 0.00 0.00 0.00 K jcn_only_AA Bin1,I_chr3R_12012377_12012433 chr3R - chr3R_12012361_12012433 chr3R_12012377_12012433 chr3R_12012434_12012533;chr3R_12012277_12012360 0.00 0.00 0.00 0.34 0.00 0.47 0.29 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.20 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.17 0.00 0.00 0.11 0.00 0.59 0.37 0.00 0.00 0.71 0.00 0.33 0.30 0.00 0.00 0.13 0.00 0.00 0.11 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention osa chr3R - chr3R_13520018_13521644 chr3R_13520017_13520018;chr3R_13521644_13521645 chr3R_13519858_13520017;chr3R_13521645_13521833 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Dsp1,I_chrX_16231287_16231413 chrX + chrX_16228273_16228333;chrX_16227804_16228333;chrX_16227677_16228333;chrX_16227797_16228333 chrX_16227752_16228333 chrX_16228334_16228446;chrX_16227667_16227676 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3R_11091413_11092154,CG4334 chr3R + chr3R_11095328_11095458 chr3R_11095327_11095328;chr3R_11095458_11095459 chr3R_11095126_11095327;chr3R_11095459_11095837 10.53 NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Atg18,I_chr3L_8182683_8182941 chr3L + chr3L_8180503_8180578 chr3L_8180502_8180503;chr3L_8180578_8180579 chr3L_8180464_8180502;chr3L_8180579_8180676 57.14 42.86 63.64 53.33 NA NA 88.24 42.86 44.00 NA NA 57.14 NA NA 33.33 58.33 63.64 NA 40.00 62.50 NA 77.42 61.11 26.67 53.33 77.78 58.82 88.89 54.55 NA 66.67 NA NA 66.67 NA 95.83 57.14 NA 40.00 56.25 NA 40.74 NA 72.73 50.00 60.00 NA 63.64 50.00 71.43 52.17 35.71 36.36 NA 61.54 50.00 40.00 NA K jcn_only_AD rin,I_chr3R_9476825_9476895 chr3R + chr3R_9476782_9476895 chr3R_9476825_9476895 chr3R_9476896_9476995;chr3R_9476725_9476781 0.66 0.72 0.40 1.27 0.91 0.51 0.68 0.80 0.78 4.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.21 0.88 0.35 0.71 0.85 0.00 0.32 0.00 2.01 0.75 1.34 13.45 0.34 1.46 2.01 0.53 0.26 0.00 1.52 0.68 0.77 0.60 0.47 0.78 0.52 0.57 1.12 0.38 6.52 0.44 1.26 0.69 0.66 0.00 0.55 0.79 2.66 0.37 0.50 1.41 0.00 N alternative_donor bchs,I_chr2L_5907926_5908312 chr2L + chr2L_5907288_5908312;chr2L_5907926_5908312 chr2L_5907644_5908312 chr2L_5908313_5908412;chr2L_5907175_5907287 0.00 0.00 8.11 0.00 0.00 0.00 4.17 3.23 3.53 0.00 0.00 2.99 0.00 0.00 3.77 0.00 0.00 0.00 0.00 5.13 0.00 6.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.33 3.28 0.00 0.00 0.00 0.00 0.00 4.69 0.00 3.08 0.00 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.32 K intron_retention CG13692,E_chr2L_422193_422242 chr2L + chr2L_422189_422242 chr2L_422188_422189;chr2L_422242_422243 chr2L_422093_422188;chr2L_422243_422342 12.90 6.67 NA NA NA 15.38 9.52 33.33 15.38 NA 30.77 15.15 NA NA NA 11.11 NA NA 23.08 18.75 NA NA 25.00 6.90 NA 25.00 17.65 30.77 10.53 16.67 14.29 10.00 12.50 17.65 NA NA 15.15 6.67 10.34 0.00 NA 16.67 NA 9.09 12.50 14.63 12.90 9.52 13.79 9.68 10.26 0.00 2.33 4.76 14.29 15.15 3.39 6.52 K intron_retention jim,I_chr3L_22791582_22791898 chr3L - chr3L_22793885_22793949 chr3L_22793884_22793885;chr3L_22793949_22793950 chr3L_22793125_22793884;chr3L_22793950_22794765 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 8.62 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 K alternative_acceptor RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12922514_12922850;chr2R_12922514_12923162 chr2R_12922514_12923159 chr2R_12922340_12922513;chr2R_12923163_12923912 1.61 1.52 1.61 0.80 1.67 8.06 4.26 0.87 0.64 1.82 3.03 0.73 1.54 2.82 2.67 1.22 1.61 1.61 2.56 1.61 1.89 0.65 1.00 4.00 1.85 1.33 2.83 1.75 0.00 1.04 1.35 3.03 0.62 1.65 1.27 2.02 0.93 1.59 0.93 2.44 0.00 0.67 1.49 1.05 2.33 1.54 5.56 0.00 0.76 1.72 1.12 2.08 2.04 4.76 1.19 5.41 3.85 1.25 K alternative_donor CG12163,CG33293,I_chr3R_1068862_1077145,RI_chr3R_1069977_1077139 chr3R - chr3R_1065342_1077145 chr3R_1065342_1077139 chr3R_1065214_1065341;chr3R_1077146_1077239 5.38 4.75 7.22 5.04 7.08 9.95 9.13 5.10 7.85 6.08 4.37 8.02 7.93 7.80 7.59 5.56 6.85 6.46 5.58 4.71 2.69 6.12 4.72 4.90 6.22 4.83 5.75 4.00 5.16 4.43 6.17 0.94 3.57 7.47 10.36 5.11 5.96 7.06 5.38 4.91 2.05 7.26 8.46 3.42 1.01 1.63 1.09 5.22 7.01 1.14 6.36 6.88 2.28 2.30 7.34 1.44 1.03 1.89 K intron_retention Socs36E chr2L - chr2L_18141251_18141743 chr2L_18141250_18141251;chr2L_18141743_18141744 chr2L_18140443_18141250;chr2L_18141744_18141853 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8963,I_chr2R_12906431_12906583,I_chr2R_12906930_12906989 chr2R - chr2R_12906431_12906711 chr2R_12906430_12906431;chr2R_12906711_12906712 chr2R_12906331_12906430;chr2R_12906712_12906826 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 1.56 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette Sh3beta,I_chr3L_7358062_7358169,RI_chr3L_7358065_7358169,I_chr3L_7361085_7361784 chr3L - chr3L_7358065_7360658 chr3L_7358065_7358169;chr3L_7359311_7359541;chr3L_7359617_7360658 chr3L_7358170_7359310;chr3L_7359542_7359616 chr3L_7357965_7358064;chr3L_7360659_7361084 100.00 66.67 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 66.67 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 66.67 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 K alternative_last_exon CG14394,I_chr3R_8522392_8522445 chr3R + chr3R_8522022_8522786;chr3R_8522022_8522175 chr3R_8522022_8522445 chr3R_8522787_8523265;chr3R_8522176_8522382 chr3R_8522446_8522755 chr3R_8521845_8522021 80.00 NA NA 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG6678 chr3R + chr3R_17713277_17713756 chr3R_17713314_17713756 chr3R_17713757_17714276;chr3R_17712862_17713276 84.52 NA NA NA NA 85.71 54.55 87.50 100.00 NA NA 63.64 NA NA 90.00 NA NA NA 75.00 87.50 NA NA 92.86 NA NA NA 60.00 NA 77.78 80.00 63.64 83.33 92.31 NA 66.67 91.67 81.82 66.67 92.31 63.16 78.95 90.00 NA 85.71 90.00 93.33 NA 75.76 83.33 NA NA 75.00 NA 88.89 87.50 60.00 87.50 94.74 K intron_retention scra,EI_chr2R_3480349_3480405 chr2R + chr2R_3478931_3479011 chr2R_3478930_3478931;chr2R_3479011_3479012 chr2R_3478451_3478930;chr2R_3479012_3479378 75.61 79.10 76.81 82.14 90.57 74.58 76.56 79.80 78.74 69.05 73.33 70.08 82.50 77.78 76.39 77.33 75.56 72.41 85.00 68.09 80.43 83.33 72.63 78.41 79.69 91.25 88.31 69.57 60.49 69.88 83.33 80.33 78.64 80.20 74.03 83.10 73.33 66.28 70.59 63.01 85.29 79.17 74.55 73.85 51.16 75.61 68.12 67.53 79.46 67.19 65.98 68.33 75.68 72.55 79.71 67.50 72.00 70.59 K jcn_only_AD CG7523 chr3R - chr3R_13495349_13495787 chr3R_13495349_13495729 chr3R_13494947_13495348;chr3R_13495788_13496064 0.72 0.40 0.58 0.52 0.00 0.83 1.23 1.07 0.84 3.33 1.80 0.72 0.85 0.00 0.65 0.71 0.70 1.37 0.81 0.00 1.72 1.07 0.32 0.92 0.72 0.68 0.38 0.76 0.00 1.93 8.40 2.61 0.44 0.00 0.71 0.49 1.06 0.38 0.58 0.61 1.10 0.56 0.00 0.78 0.69 0.68 0.65 1.42 0.39 0.80 1.95 1.31 0.36 0.84 0.00 1.57 1.01 1.18 K alternative_acceptor RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,alpha4GT1,RI_chr2L_3022346_3022422,CG3605,CG17258 chr2L - chr2L_3022346_3022422 chr2L_3022369_3022422 chr2L_3022423_3022522;chr2L_3022246_3022345 96.97 92.31 96.88 95.56 100.00 96.15 97.62 100.00 98.41 96.88 100.00 100.00 100.00 100.00 93.94 94.59 95.24 96.30 100.00 98.25 82.61 100.00 91.67 100.00 100.00 100.00 96.77 100.00 100.00 94.74 95.65 100.00 96.55 100.00 95.00 95.65 100.00 100.00 95.74 96.97 95.24 98.44 93.75 97.30 96.00 100.00 96.15 95.65 94.64 96.77 100.00 95.45 90.00 100.00 100.00 90.91 97.37 100.00 K alternative_acceptor CG33116,I_chr2L_19533887_19534154 chr2L + chr2L_19533887_19534154 chr2L_19533887_19534149 chr2L_19533787_19533886;chr2L_19534155_19534218 100.00 100.00 100.00 100.00 100.00 100.00 96.43 97.22 97.78 100.00 100.00 97.83 100.00 100.00 100.00 94.29 94.12 100.00 96.30 98.00 94.74 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 97.22 95.00 90.91 96.77 95.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 97.83 100.00 100.00 100.00 92.31 NA 94.74 100.00 100.00 100.00 K jcn_only_AA CG12576,RI_chrX_21878289_21882347,I_chrX_21882735_21882809,I_chrX_21882735_21883407,I_chrX_21882735_21883467,I_chrX_21882735_21883620,I_chrX_21882735_21883714 chrX - chrX_21882732_21883750 chrX_21882735_21883750 chrX_21883751_21883814;chrX_21882635_21882731 89.80 89.36 93.06 92.36 92.96 84.93 88.57 91.19 87.65 91.23 94.12 87.86 89.89 85.57 87.91 89.63 89.80 90.67 87.39 89.62 84.04 95.49 88.98 87.84 90.38 92.00 87.34 78.33 84.30 90.00 91.49 88.00 91.76 89.09 95.45 93.83 94.79 91.94 91.86 91.87 90.67 88.31 88.46 89.84 93.02 88.98 85.11 91.80 91.76 79.69 93.62 83.78 89.83 89.58 89.72 94.94 88.89 88.56 K intron_retention alpha-Man-II chr3R + chr3R_5242215_5242310 chr3R_5242214_5242215;chr3R_5242310_5242311 chr3R_5241152_5242214;chr3R_5242311_5242989 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG3589 chr2R + chr2R_20672784_20672850 chr2R_20672784_20672834 chr2R_20672324_20672783;chr2R_20672851_20672935 100.00 100.00 NA 100.00 NA NA 100.00 97.56 97.44 NA 100.00 97.67 NA NA 100.00 96.43 100.00 NA NA 100.00 NA 95.35 100.00 93.48 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 96.97 100.00 100.00 NA 100.00 100.00 100.00 100.00 95.45 98.08 NA 96.15 95.65 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 89.66 95.35 96.15 97.14 K cassette msps,I_chr3R_11877071_11877796 chr3R + chr3R_11882514_11883273 chr3R_11882514_11883015;chr3R_11883112_11883273 chr3R_11883016_11883111 chr3R_11882014_11882513;chr3R_11883274_11883487 8.16 6.96 13.64 6.51 12.17 6.61 4.93 6.79 6.34 16.67 5.68 4.66 6.98 7.63 8.20 9.30 7.14 9.32 10.00 17.62 8.51 15.54 8.16 7.59 3.03 3.08 8.59 9.52 6.32 10.71 11.29 20.69 15.08 7.00 7.76 23.91 11.49 7.96 5.05 4.60 12.07 5.02 8.65 10.58 10.14 13.51 10.28 18.70 5.48 6.48 7.23 7.55 7.25 8.33 5.99 9.90 8.05 15.38 K alternative_last_exon CG12163,I_chr3R_1068862_1077145,RI_chr3R_1069977_1077139 chr3R - chr3R_1065342_1077139 chr3R_1069977_1077139 chr3R_1065214_1065341 chr3R_1068874_1069976 chr3R_1077140_1077239 16.67 NA NA NA NA NA 16.67 0.00 10.00 NA NA 16.67 NA 33.33 NA NA NA 20.00 20.00 11.11 NA 12.50 NA 16.67 NA NA 14.29 NA 0.00 NA NA NA NA NA NA 20.00 NA NA NA NA NA 10.00 25.00 NA NA NA 33.33 NA NA NA 25.00 NA NA NA NA NA NA 0.00 K alternative_acceptor ras chrX + chrX_10639523_10639804 chrX_10639523_10639710 chrX_10639459_10639522;chrX_10639805_10639997 100.00 100.00 100.00 100.00 100.00 100.00 95.65 96.97 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 94.12 93.75 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 96.15 100.00 100.00 97.73 100.00 100.00 100.00 95.24 100.00 95.24 100.00 100.00 100.00 K jcn_only_AD TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748981_19749882;chr2R_19748981_19749899;chr2R_19748981_19749783 chr2R_19748981_19750012 chr2R_19748884_19748980;chr2R_19750013_19750013 15.47 10.81 18.75 13.79 20.00 20.00 10.00 22.37 11.11 NA 13.04 17.33 14.81 13.16 21.95 23.64 17.65 21.43 15.38 23.61 12.12 14.29 6.67 16.67 11.54 15.56 5.41 NA 35.00 14.29 36.96 40.00 38.10 17.65 NA 8.70 3.33 11.54 25.53 13.33 16.00 15.71 26.09 5.88 NA 13.89 27.27 11.76 15.25 15.15 16.33 20.00 NA 6.25 14.29 26.47 14.29 17.95 N intron_retention aru,I_chr2L_864795_867505,snoRNA:Me28S-U1230 chr2L - chr2L_864966_865826 chr2L_864965_864966;chr2L_865826_865827 chr2L_864877_864965;chr2L_865827_865847 100.00 100.00 100.00 67.44 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 70.73 100.00 84.93 100.00 100.00 100.00 85.25 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 82.35 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 76.92 100.00 100.00 58.70 100.00 68.18 82.86 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 76.92 K jcn_only_AA CG6509 chr2L - chr2L_11515671_11515725 chr2L_11515674_11515725 chr2L_11515726_11515817;chr2L_11511609_11515670 96.25 89.29 95.12 95.38 100.00 91.30 92.16 96.97 94.44 95.65 96.88 96.25 91.89 100.00 97.78 91.30 94.29 97.62 100.00 92.86 100.00 96.00 96.15 90.91 98.18 97.44 95.35 96.15 97.67 94.67 97.37 NA 95.08 97.26 94.59 95.31 96.94 97.67 94.83 98.80 92.86 97.50 100.00 98.31 96.15 NA 96.43 96.72 91.94 97.30 96.92 96.00 100.00 NA 92.00 100.00 NA 96.30 K intron_retention CG6659 chrX - chrX_18551212_18551268 chrX_18551211_18551212;chrX_18551268_18551269 chrX_18551131_18551211;chrX_18551269_18551277 99.43 100.00 98.11 100.00 100.00 100.00 98.33 98.21 98.32 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 98.08 98.82 100.00 98.59 96.88 100.00 100.00 97.83 100.00 100.00 100.00 100.00 98.65 98.41 100.00 98.61 100.00 100.00 98.90 98.21 98.72 99.43 100.00 99.00 97.56 100.00 98.57 98.81 97.06 100.00 100.00 93.62 100.00 97.44 97.78 100.00 98.25 96.67 97.83 98.88 K jcn_only_AA CG7158 chr3L - chr3L_21668076_21668121;chr3L_21668063_21668121 chr3L_21668049_21668121 chr3L_21668122_21668273;chr3L_21667494_21668048 0.00 2.27 2.33 2.17 0.00 0.00 0.00 2.38 0.00 NA 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 1.89 0.00 2.38 2.78 1.85 0.00 0.00 3.85 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.64 0.00 0.00 0.00 3.57 0.00 0.00 2.38 0.00 0.00 1.61 1.85 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 K intron_retention RI_chr3L_20370940_20371530,I_chr3L_20374844_20374891,fbl chr3L + chr3L_20383494_20383557 chr3L_20383493_20383494;chr3L_20383557_20383558 chr3L_20383374_20383493;chr3L_20383558_20383734 6.56 3.57 3.77 11.11 6.52 10.91 9.26 8.45 6.19 2.27 8.57 4.12 4.65 8.33 7.81 10.53 0.00 6.56 9.52 7.63 2.70 13.04 5.26 4.11 11.90 2.44 10.94 20.00 7.84 8.33 6.35 3.92 7.69 4.94 14.29 13.89 3.90 4.76 6.42 7.14 3.23 9.00 3.45 3.45 7.55 10.29 7.02 5.06 5.15 14.71 4.44 8.00 2.00 8.00 4.00 9.80 5.48 6.45 K alternative_acceptor mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818597_7818970;chr3R_7818575_7818970 chr3R_7818607_7818970 chr3R_7818971_7818995;chr3R_7818507_7818574 14.81 12.24 12.00 6.92 11.34 14.93 39.81 12.09 14.35 16.67 16.87 17.37 14.52 12.75 17.27 12.88 13.93 10.87 12.40 15.20 18.18 4.69 15.00 19.30 19.44 8.74 22.50 22.58 19.51 15.69 12.36 14.63 7.50 14.10 13.33 22.86 16.88 22.06 15.91 12.59 16.00 11.82 18.28 16.00 13.11 12.50 14.81 10.91 14.57 20.27 17.78 16.42 13.79 12.50 14.81 19.30 15.48 7.45 K alternative_acceptor CG32412 chr3L - chr3L_5895356_5895434 chr3L_5895377_5895434 chr3L_5895435_5895550;chr3L_5895260_5895355 0.00 0.00 0.00 1.45 0.00 0.00 0.00 3.39 1.32 0.00 0.00 0.00 3.12 0.00 3.03 0.00 2.70 0.00 0.00 1.40 0.00 0.00 1.00 0.00 0.00 3.77 1.12 0.00 1.33 0.00 0.00 0.00 2.27 3.12 0.00 0.00 0.79 4.35 1.06 0.54 0.00 0.93 0.00 0.00 0.00 1.68 0.00 0.81 0.00 0.00 1.33 0.00 0.00 1.39 1.79 0.00 0.00 0.00 K intron_retention CG32243 chr3L - chr3L_4540032_4540084 chr3L_4540031_4540032;chr3L_4540084_4540085 chr3L_4539340_4540031;chr3L_4540085_4540230 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 1.96 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 NA 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA qkr54B chr2R + chr2R_13357223_13358081 chr2R_13357223_13358071 chr2R_13357143_13357222;chr2R_13358082_13358391 14.71 25.00 25.93 10.91 9.09 23.33 14.71 6.82 21.21 NA 13.04 11.48 4.55 7.69 16.67 18.87 11.11 NA 4.65 23.64 23.08 7.41 14.29 4.55 NA 18.92 14.71 20.00 NA NA 11.27 NA NA 16.28 19.23 NA 3.85 NA 6.45 13.89 NA 11.67 26.92 11.54 NA NA 21.74 NA 25.00 10.00 21.21 NA NA 21.74 19.23 19.05 25.81 NA K intron_retention CG6701,RI_chr2R_9866896_9867532 chr2R - chr2R_9864810_9864880 chr2R_9864809_9864810;chr2R_9864880_9864881 chr2R_9862939_9864809;chr2R_9864881_9865085 0.00 2.33 0.79 1.42 1.09 0.00 2.28 2.23 1.91 0.00 0.00 2.17 1.75 0.00 2.10 2.03 0.00 1.03 1.45 0.56 0.00 1.75 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 1.32 0.00 1.27 2.06 0.00 0.00 0.00 0.00 1.76 1.03 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 K jcn_only_AD Dip-B chr3R + chr3R_9609979_9610038 chr3R_9609982_9610038 chr3R_9610039_9611387;chr3R_9609919_9609978 100.00 100.00 99.54 100.00 99.42 100.00 99.26 100.00 99.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.86 99.47 100.00 99.33 100.00 100.00 100.00 100.00 100.00 99.59 99.64 100.00 99.16 99.22 100.00 100.00 100.00 100.00 99.46 100.00 100.00 100.00 100.00 99.46 99.17 100.00 100.00 98.81 99.66 100.00 100.00 99.44 100.00 100.00 100.00 100.00 100.00 100.00 99.54 100.00 100.00 K intron_retention Ac3,I_chr2L_21635211_21637957,I_chr2L_21643253_21646594 chr2L + chr2L_21638117_21638229 chr2L_21638116_21638117;chr2L_21638229_21638230 chr2L_21637984_21638116;chr2L_21638230_21638303 0.96 NA NA 11.76 NA NA 23.53 6.90 0.00 NA NA 0.00 NA NA 0.00 NA NA NA 0.00 4.55 NA NA NA 0.00 NA 11.11 0.00 NA NA NA 1.92 NA NA NA NA 14.29 NA NA 13.33 0.00 NA 0.00 NA NA NA NA NA NA 8.33 NA 0.00 NA NA NA NA NA NA NA K intron_retention CG12703 chrX + chrX_19651531_19651600 chrX_19651530_19651531;chrX_19651600_19651601 chrX_19651067_19651530;chrX_19651601_19652030 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 1.20 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 K intron_retention CG13124,RI_chr2L_9906444_9907607,RI_chr2L_9907784_9908405,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907548_9907607 chr2L_9907547_9907548;chr2L_9907607_9907608 chr2L_9907051_9907547;chr2L_9907608_9907707 0.00 0.00 0.00 0.88 0.00 0.00 3.03 0.00 2.54 0.00 0.00 5.10 3.70 0.00 1.61 0.00 0.00 0.00 0.00 3.40 2.17 6.19 1.37 0.00 4.88 0.00 3.08 0.00 31.65 0.00 0.00 2.27 0.00 0.93 0.00 1.64 3.77 0.00 0.00 1.72 4.44 2.08 0.00 0.00 0.00 1.41 0.00 4.55 3.12 10.81 3.85 3.03 0.00 0.00 4.23 0.00 0.00 0.00 K jcn_only_AD B52,F_chr3R_9488762_9491174,E_chr3R_9488770_9491174 chr3R + chr3R_9488774_9491174 chr3R_9490657_9491174 chr3R_9491175_9491248 11.48 10.71 10.50 3.26 8.20 7.40 12.94 10.84 12.50 16.16 14.95 15.99 14.94 12.80 7.48 13.56 11.48 12.28 9.63 7.81 11.16 9.06 14.79 15.11 15.07 14.46 11.83 8.14 13.80 8.87 34.51 8.89 7.77 13.25 11.75 11.33 14.83 11.72 14.30 9.61 9.01 11.54 9.35 24.32 6.25 10.11 11.20 7.91 10.88 13.37 14.29 14.46 9.94 10.70 11.61 17.31 8.05 6.43 K alternative_acceptor Dystrophin,noncoding_17759,I_chr3R_15289404_15290179 chr3R + chr3R_15289437_15290221 chr3R_15289437_15290179 chr3R_15289413_15289436;chr3R_15290222_15290279 71.37 NA NA NA NA NA NA NA 72.73 NA NA NA NA 75.00 NA 70.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA smt3,I_chr2L_6967327_6967507 chr2L - chr2L_6967330_6967507 chr2L_6967386_6967507 chr2L_6967508_6967593;chr2L_6966982_6967329 100.00 100.00 100.00 99.92 99.88 100.00 99.91 99.93 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.76 100.00 99.79 99.88 100.00 100.00 100.00 100.00 99.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.82 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.73 100.00 99.82 100.00 100.00 99.91 100.00 K intron_retention I_chr2L_2856176_2856244,RI_chr2L_2856673_2856772,CG2991 chr2L + chr2L_2867231_2867336 chr2L_2867230_2867231;chr2L_2867336_2867337 chr2L_2866814_2867230;chr2L_2867337_2868288 0.00 0.81 0.00 1.25 0.00 0.00 0.00 2.00 1.23 0.00 1.64 2.97 1.06 0.00 0.00 1.40 0.00 1.68 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 1.38 0.00 1.16 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.71 0.00 2.00 1.27 0.00 0.00 0.00 1.35 0.00 0.00 0.53 0.80 0.81 0.00 0.00 0.00 3.08 0.00 1.08 0.00 K jcn_only_AA CG7267,RI_chrX_8967339_8972369,I_chrX_8971691_8972369 chrX - chrX_8966023_8972369 chrX_8971691_8972369 chrX_8972370_8972469;chrX_8965905_8966022 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.04 0.00 0.11 0.00 0.18 0.00 0.00 0.00 0.15 0.15 0.00 0.00 0.00 0.17 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.22 0.00 0.00 0.04 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.41 K alternative_donor CG32000,RI_chr4_153025_153811,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_153025_153811;chr4_152914_153811 chr4_152998_153811 chr4_153812_153855;chr4_152891_152913 8.33 NA 0.00 19.44 NA 16.67 4.65 2.50 6.82 NA NA 13.16 14.29 9.09 NA 14.29 NA NA 9.09 8.11 NA NA NA NA NA NA NA NA 18.18 9.09 NA 8.33 3.70 7.14 NA NA NA NA NA 13.33 NA 4.35 7.14 NA 8.33 NA NA 7.14 1.79 NA NA NA NA NA NA NA NA 9.09 K alternative_acceptor eIF-5A,I_chr2R_19946299_19946454,I_chr2R_19946657_19946733,RI_chr2R_19946806_19946861,I_chr2R_19948517_19948682 chr2R + chr2R_19946657_19946733 chr2R_19946657_19946718 chr2R_19946588_19946656;chr2R_19946734_19946799 100.00 100.00 100.00 99.95 100.00 99.90 99.95 99.96 99.96 100.00 100.00 99.95 100.00 100.00 99.92 100.00 100.00 100.00 99.93 99.96 100.00 100.00 99.92 100.00 99.86 99.92 100.00 99.27 100.00 99.84 100.00 100.00 100.00 99.95 100.00 100.00 100.00 100.00 100.00 99.95 99.87 100.00 100.00 99.91 100.00 100.00 100.00 99.87 99.95 100.00 99.92 100.00 100.00 100.00 99.94 100.00 99.94 100.00 K jcn_only_AA CG17574,I_chr2R_8737398_8737465 chr2R - chr2R_8737544_8737603 chr2R_8737547_8737603 chr2R_8737604_8737733;chr2R_8737466_8737543 9.76 10.89 7.85 14.85 9.52 8.15 11.74 7.73 8.14 8.30 11.36 10.03 10.99 8.28 11.27 8.20 9.91 11.11 7.21 9.64 10.26 9.86 6.46 9.24 13.11 8.22 10.51 10.29 15.61 12.97 11.49 9.58 7.18 7.98 10.33 14.35 9.09 12.40 9.76 11.50 14.75 8.45 5.26 8.87 13.66 8.03 5.80 11.18 9.68 7.31 9.81 9.56 7.96 11.08 8.10 10.49 9.46 10.97 K alternative_acceptor I_chr2R_4783150_4783708,Ggamma1,noncoding_5300 chr2R + chr2R_4789783_4789847 chr2R_4789783_4789832 chr2R_4789746_4789782;chr2R_4789848_4790635 96.08 96.05 94.59 98.85 97.22 94.67 93.42 89.32 96.04 100.00 92.00 92.64 98.18 98.36 95.52 97.78 96.67 97.83 93.33 97.49 90.00 93.48 100.00 98.25 95.56 98.33 97.56 96.67 97.62 97.37 95.95 95.35 97.67 93.18 98.21 100.00 92.73 96.00 97.53 92.41 97.30 95.00 97.56 88.89 96.43 96.08 94.38 96.88 93.55 94.44 93.67 97.22 98.72 98.10 93.65 94.52 96.47 94.87 K intron_retention CG4165,I_chrX_5317784_5317881,I_chrX_5321743_5321838 chrX + chrX_5316160_5316612 chrX_5316159_5316160;chrX_5316612_5316613 chrX_5316068_5316159;chrX_5316613_5317050 18.75 14.29 NA 22.22 NA NA 41.67 NA 20.00 NA NA 10.53 NA NA NA 38.46 NA 13.33 6.67 20.00 NA 13.33 18.75 NA NA NA NA 16.67 NA 25.00 NA NA 42.86 15.38 NA 33.33 13.33 NA NA NA NA 10.53 NA NA NA NA NA 50.00 8.33 NA 22.22 NA NA NA NA NA NA NA K cassette cher,I_chr3R_12943024_12948119 chr3R - chr3R_12931536_12932675 chr3R_12931536_12932001;chr3R_12932569_12932675 chr3R_12932002_12932568 chr3R_12930731_12931535;chr3R_12932676_12933062 0.20 0.17 0.18 0.09 0.00 0.24 0.00 0.09 0.06 0.27 0.00 0.15 0.00 0.20 0.17 0.28 0.00 0.16 0.00 0.10 0.18 0.22 0.30 0.45 0.00 0.00 0.19 1.17 0.22 0.20 0.20 0.43 0.30 0.11 0.25 0.62 0.29 0.20 0.26 0.00 0.38 0.16 0.20 0.19 0.34 0.32 0.32 0.34 0.21 0.00 0.20 0.00 0.54 0.64 0.15 0.35 0.39 0.66 K intron_retention lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22818063_22818112 chr2L_22818062_22818063;chr2L_22818112_22818113 chr2L_22817969_22818062;chr2L_22818113_22818230 0.00 0.00 0.00 0.00 0.00 0.00 1.32 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 4.29 0.00 0.00 1.64 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 2.25 0.00 1.81 1.11 5.88 0.00 0.00 0.00 0.00 1.07 4.55 0.00 4.55 5.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor I_chr2R_5999081_6000140,E_chr2R_6001157_6001630,CG11866 chr2R + chr2R_6005374_6005536 chr2R_6005405_6005536 chr2R_6005537_6006047;chr2R_6005198_6005373 8.79 14.29 6.25 6.78 5.56 11.11 25.93 6.12 8.51 NA 5.88 7.46 3.23 11.54 13.33 10.29 4.17 5.00 9.52 10.17 12.00 8.00 8.89 4.76 5.13 9.38 11.63 12.50 33.33 6.25 11.11 12.90 11.76 10.20 13.64 9.09 16.67 3.23 5.77 10.00 18.52 5.00 13.79 7.69 8.33 6.06 5.71 11.76 7.46 9.68 10.42 15.38 8.00 5.00 5.88 6.06 8.70 6.45 K intron_retention Hel25E,I_chr2L_5540301_5540396 chr2L - chr2L_5540301_5540396 chr2L_5540300_5540301;chr2L_5540396_5540397 chr2L_5540201_5540300;chr2L_5540397_5540422 90.20 95.45 80.95 96.43 92.86 85.71 86.11 85.71 88.64 81.48 92.86 96.97 95.83 100.00 95.65 91.18 94.12 78.26 91.67 90.20 78.95 82.76 90.70 92.00 76.00 90.48 85.71 97.06 81.58 92.31 74.07 86.36 91.94 91.30 87.50 85.19 86.11 77.78 86.21 85.94 84.78 94.59 76.47 96.00 96.97 81.63 90.91 88.89 95.24 83.33 87.50 93.75 90.91 81.82 82.61 92.59 95.24 90.57 K cassette I_chr2L_2856176_2856244,RI_chr2L_2856673_2856772,CG2991 chr2L + chr2L_2857577_2864968 chr2L_2857577_2859624;chr2L_2859715_2864968 chr2L_2859625_2859714 chr2L_2857219_2857576;chr2L_2864969_2865418 5.88 4.21 7.69 2.91 4.55 5.21 4.62 7.21 6.72 3.03 9.41 6.28 2.35 6.82 5.08 6.10 6.19 6.80 5.50 11.00 9.41 6.36 5.93 4.17 2.82 3.33 4.46 8.70 7.69 5.88 6.56 4.00 2.78 6.76 6.76 1.28 5.26 7.69 4.90 6.38 4.65 6.45 6.80 7.59 4.17 4.62 4.84 2.99 6.11 5.77 4.46 6.25 6.25 4.17 7.91 5.56 6.52 3.03 K alternative_acceptor CG3731,E_chr3R_10717341_10717506 chr3R + chr3R_10716149_10716417 chr3R_10716149_10716391 chr3R_10716056_10716148;chr3R_10716418_10716624 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.20 0.21 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention hang,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16330538_16330620 chrX_16330537_16330538;chrX_16330620_16330621 chrX_16329178_16330537;chrX_16330621_16330698 43.87 46.75 44.44 48.89 48.39 47.54 40.23 45.10 45.83 30.65 44.44 43.10 39.44 44.07 53.42 53.23 56.52 41.18 48.53 39.78 45.45 49.11 44.60 41.24 63.24 59.68 52.58 45.92 38.93 28.70 47.69 47.83 36.07 39.09 42.11 76.06 40.50 43.21 39.55 34.55 56.00 43.87 57.41 36.28 42.67 38.18 32.43 31.03 41.04 37.21 50.49 48.44 27.85 41.94 37.29 45.00 30.14 18.42 K alternative_donor CG15134 chr2L + chr2L_16904713_16905298;chr2L_16904662_16905298 chr2L_16904611_16905298 chr2L_16905299_16905389;chr2L_16904460_16904610 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 2.63 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG4880 chrX + chrX_16781381_16781655 chrX_16781444_16781655 chrX_16781656_16782762;chrX_16780837_16781380 100.00 97.62 100.00 97.87 100.00 97.22 97.83 97.67 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.33 97.87 100.00 100.00 95.65 97.22 96.77 100.00 100.00 96.30 100.00 100.00 100.00 97.06 94.12 98.15 100.00 98.15 96.43 100.00 100.00 100.00 100.00 98.08 97.14 100.00 100.00 100.00 97.62 100.00 100.00 97.67 97.14 97.14 100.00 100.00 K intron_retention Las,mRpL15 chr3L - chr3L_20424705_20424917 chr3L_20424704_20424705;chr3L_20424917_20424918 chr3L_20424548_20424704;chr3L_20424918_20425250 0.00 0.00 NA NA NA NA 0.00 0.00 3.12 0.00 NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 5.88 4.55 0.00 0.00 NA 3.03 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.23 3.23 2.94 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention Fpps chr2R - chr2R_7194465_7194765 chr2R_7194464_7194465;chr2R_7194765_7194766 chr2R_7194370_7194464;chr2R_7194766_7195007 0.00 0.00 0.00 3.75 0.00 1.69 1.49 3.12 0.00 0.00 1.54 9.46 2.94 0.00 0.00 4.55 0.00 10.53 0.00 3.66 1.96 3.12 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 1.92 2.02 0.00 0.00 2.74 4.44 0.00 0.00 15.00 0.00 0.00 2.00 0.00 7.69 0.00 5.71 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 K alternative_acceptor Dap160,I_chr2L_21139943_21140007 chr2L - chr2L_21138359_21138711 chr2L_21138362_21138711 chr2L_21138712_21139602;chr2L_21138113_21138358 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 90.00 96.15 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 96.00 100.00 NA 100.00 100.00 96.15 96.88 100.00 95.83 100.00 100.00 100.00 100.00 100.00 95.24 96.43 97.44 93.55 100.00 NA 100.00 100.00 97.14 100.00 97.67 95.65 100.00 100.00 93.33 96.43 95.65 100.00 95.83 100.00 98.04 K alternative_donor CG4877 chr3L + chr3L_16379595_16379725 chr3L_16379671_16379725 chr3L_16379726_16380052;chr3L_16379486_16379594 90.00 88.89 88.89 90.91 NA 100.00 91.67 81.82 88.89 NA NA 73.68 90.00 85.71 100.00 93.75 NA 87.50 90.91 80.00 NA NA 93.33 88.89 NA 88.89 NA 83.33 NA 100.00 90.00 NA NA 92.31 100.00 85.71 NA NA NA 92.86 NA 92.31 83.33 100.00 NA NA NA 100.00 75.00 NA 91.67 87.50 NA NA 100.00 NA NA NA K jcn_only_AD CG10026 chr2L + chr2L_19455858_19456408 chr2L_19456184_19456408 chr2L_19456409_19456568;chr2L_19455678_19455857 60.00 NA NA NA NA NA NA 60.00 60.47 NA NA 66.67 NA NA NA NA NA NA NA 46.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.91 NA NA 50.00 NA NA NA NA NA NA 71.43 NA NA NA NA NA NA NA NA NA K intron_retention alph,I_chr3R_25417890_25422962,chr3R_25434193_25434663.0,chr3R_25438076_25442069.0 chr3R + chr3R_25423196_25423497 chr3R_25423195_25423196;chr3R_25423497_25423498 chr3R_25423141_25423195;chr3R_25423498_25423510 3.64 1.89 3.12 4.84 7.14 6.67 7.81 3.12 2.48 2.94 0.00 4.27 2.50 4.17 5.88 7.00 0.00 0.00 5.00 3.33 0.00 4.29 2.82 5.45 0.00 11.43 6.94 12.07 3.85 1.64 5.17 0.00 0.00 4.82 3.64 9.52 3.70 6.06 5.45 7.14 1.15 3.06 5.00 0.00 1.33 4.60 5.26 0.83 5.81 1.23 1.39 3.12 0.00 5.77 5.26 0.00 2.38 2.04 K intron_retention noncoding_1047,CG3887 chr2L + chr2L_5009525_5009675 chr2L_5009524_5009525;chr2L_5009675_5009676 chr2L_5009085_5009524;chr2L_5009676_5009691 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG12929,RI_chr2R_5474101_5474150 chr2R - chr2R_5473737_5473794 chr2R_5473736_5473737;chr2R_5473794_5473795 chr2R_5473674_5473736;chr2R_5473795_5473836 28.57 33.33 NA 68.00 NA 14.29 45.45 47.37 37.50 NA NA 28.57 NA NA 25.00 NA NA 41.67 NA 31.71 25.00 NA 45.45 11.76 50.00 58.82 38.46 NA 45.45 28.57 30.00 25.00 21.43 23.53 13.33 78.95 NA 41.67 NA 8.33 51.85 26.92 NA NA 9.09 10.00 18.75 0.00 30.77 33.33 21.43 NA 16.00 26.32 35.71 15.00 18.64 23.68 K intron_retention Socs36E chr2L - chr2L_18140155_18140442 chr2L_18140154_18140155;chr2L_18140442_18140443 chr2L_18139896_18140154;chr2L_18140443_18141250 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.22 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.93 0.00 0.00 0.00 0.00 2.17 3.05 1.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585739_2586265;chr3L_2585739_2586402;chr3L_2585739_2586036 chr3L_2585739_2586413 chr3L_2585639_2585738;chr3L_2586414_2586502 0.00 0.00 0.00 0.71 0.87 0.00 0.00 0.29 0.56 0.00 0.62 0.00 0.00 0.43 0.44 0.28 0.00 0.58 0.48 0.00 0.00 0.65 0.97 0.79 0.00 0.47 0.00 0.00 1.02 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 1.31 0.73 0.27 0.64 0.00 0.00 0.00 1.52 0.28 0.98 3.57 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 N mutually_exclusive cv-2 chr2R - chr2R_17246690_17254167,chr2R_17254471_17266009 chr2R_17246690_17251203,chr2R_17251293_17266009 chr2R_17254168_17254470 chr2R_17251204_17251292 chr2R_17246596_17246689;chr2R_17266010_17266907 81.66 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA 80.00 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG10277,I_chr3R_2208983_2210253,I_chr3R_2211939_2212057 chr3R + chr3R_2208983_2210702 chr3R_2208983_2210253 chr3R_2208883_2208982;chr3R_2210703_2210980 1.23 3.70 1.35 1.38 2.56 0.00 1.61 1.21 0.57 0.00 0.00 1.44 1.54 1.49 1.37 1.65 0.00 4.00 1.32 0.96 1.59 1.32 1.20 0.96 1.67 2.50 0.80 1.56 1.63 1.74 1.06 1.08 1.30 1.04 0.00 0.87 0.66 NA 0.67 1.20 0.88 0.62 1.72 0.00 1.11 0.76 0.76 1.24 1.64 0.00 1.44 2.38 0.00 1.06 1.33 2.27 1.47 1.00 K jcn_only_AA Rox8,I_chr3R_19872211_19872659,I_chr3R_19872214_19872630,I_chr3R_19872214_19872636,I_chr3R_19872214_19872838,I_chr3R_19876189_19876240 chr3R - chr3R_19872211_19873540 chr3R_19872214_19873540 chr3R_19873541_19873670;chr3R_19872114_19872210 90.35 NA 93.33 84.31 NA 88.46 92.86 82.76 90.00 NA NA 93.94 80.95 93.33 92.68 79.41 90.91 NA 92.86 86.67 86.36 NA 96.43 NA NA 81.25 100.00 NA 83.33 NA 100.00 NA 90.00 90.70 90.00 100.00 NA NA 95.45 NA NA 89.09 82.61 NA NA NA NA 83.87 92.59 NA NA NA NA NA NA NA NA 93.33 K intron_retention CG3501,I_chr2R_18772777_18772819 chr2R - chr2R_18769183_18769245 chr2R_18769182_18769183;chr2R_18769245_18769246 chr2R_18768711_18769182;chr2R_18769246_18769443 100.00 100.00 100.00 100.00 100.00 100.00 99.04 100.00 100.00 100.00 100.00 99.35 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.30 100.00 99.11 100.00 100.00 98.97 100.00 100.00 100.00 100.00 K intron_retention noncoding_7373,REI_chr2R_12706037_12706094 chr2R - chr2R_12706006_12706094 chr2R_12706005_12706006;chr2R_12706094_12706095 chr2R_12705937_12706005;chr2R_12706095_12706194 30.77 NA NA NA NA NA 33.33 33.33 35.29 NA NA 26.09 30.77 NA 46.15 NA NA 13.64 45.45 47.06 NA NA NA NA NA NA NA NA NA NA 13.04 NA NA 45.45 NA NA NA NA NA 15.79 NA 26.32 NA 14.29 NA NA NA NA 47.06 NA 30.77 NA NA NA NA NA NA 0.00 K cassette I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10065344,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10064197_10065365;chr2R_10064197_10065389 chr2R_10064197_10064679;chr2R_10064983_10065389,chr2R_10064983_10065365 chr2R_10064680_10064982 chr2R_10064117_10064196;chr2R_10065390_10065444 78.79 85.12 75.82 60.83 72.73 75.00 48.08 68.85 75.62 87.21 57.69 92.00 81.33 72.00 77.66 72.83 74.65 66.67 72.37 78.79 64.94 58.70 79.71 89.57 89.29 59.55 80.85 85.19 80.18 82.14 73.61 85.71 81.03 72.86 75.00 81.48 92.18 88.36 88.55 79.44 81.01 78.57 74.60 83.74 80.18 81.31 83.64 77.59 78.86 82.88 77.50 76.53 87.38 85.86 74.51 87.37 78.57 78.10 K alternative_donor Spred,I_chr2R_10655876_10656041,I_chr2R_10655876_10656193,I_chr2R_10655876_10656868 chr2R - chr2R_10655876_10656848;chr2R_10655876_10656782;chr2R_10655876_10656526;chr2R_10655876_10656871 chr2R_10655876_10656878 chr2R_10655776_10655875;chr2R_10656879_10656886 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 4.55 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG42358,CG42359 chr3R - chr3R_14986947_14987511 chr3R_14986946_14986947;chr3R_14987511_14987512 chr3R_14986449_14986946;chr3R_14987512_14987761 34.62 28.21 26.00 40.00 41.18 27.27 48.28 28.74 30.00 54.55 43.33 34.62 27.08 32.56 28.57 26.25 26.67 44.90 26.53 41.30 33.33 14.29 21.15 29.17 34.38 38.30 34.78 21.05 46.67 32.00 46.75 60.00 14.63 29.33 28.95 42.11 44.44 37.50 46.81 36.99 37.50 25.25 24.24 38.64 46.94 39.13 34.00 44.44 31.76 21.82 35.09 41.94 38.30 37.50 32.14 32.76 38.20 38.46 K cassette CG34398 chr2L + chr2L_8916054_8925203 chr2L_8916054_8922937;chr2L_8923457_8925203 chr2L_8922938_8923456 chr2L_8916029_8916053;chr2L_8925204_8925456 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG4169,CG32163 chr3L + chr3L_16577823_16577878 chr3L_16577822_16577823;chr3L_16577878_16577879 chr3L_16577689_16577822;chr3L_16577879_16578182 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.66 0.00 0.25 0.00 0.00 0.72 1.69 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.18 0.45 1.65 0.38 0.00 0.00 0.26 0.74 0.61 1.09 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 K jcn_only_AA CtBP chr3R + chr3R_8847365_8850545 chr3R_8847365_8850521 chr3R_8847142_8847364;chr3R_8850546_8850586 65.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 65.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG17660 chr2L - chr2L_1709806_1709877 chr2L_1709812_1709877 chr2L_1709878_1709963;chr2L_1709617_1709805 99.46 100.00 100.00 99.46 99.01 100.00 100.00 99.49 100.00 99.46 99.21 99.22 99.14 100.00 99.34 100.00 100.00 100.00 99.17 99.29 99.14 100.00 98.40 99.01 98.70 99.12 100.00 98.31 100.00 99.33 97.01 100.00 99.64 99.45 100.00 100.00 99.70 100.00 100.00 99.63 100.00 99.62 98.04 100.00 100.00 100.00 99.28 98.36 98.59 98.51 100.00 98.11 99.31 99.01 99.17 99.24 99.35 99.29 K intron_retention Tsp97E chr3R - chr3R_22790008_22790364 chr3R_22790007_22790008;chr3R_22790364_22790365 chr3R_22789840_22790007;chr3R_22790365_22790433 3.33 0.00 3.33 0.00 NA 8.33 5.88 4.35 2.33 NA NA 3.08 0.00 0.00 0.00 0.00 NA 8.33 0.00 1.47 9.52 16.22 5.66 1.96 5.71 0.00 5.26 8.00 4.00 NA 6.06 8.70 15.38 0.00 0.00 0.00 6.25 0.00 2.08 12.50 NA 5.77 0.00 8.33 0.00 5.00 7.69 25.00 3.39 4.17 2.38 0.00 0.00 6.25 3.12 0.00 0.00 14.29 K cassette crol,I_chr2L_11799403_11802904 chr2L - chr2L_11799403_11802286;chr2L_11799403_11802904;chr2L_11799403_11802370 chr2L_11799403_11800154;chr2L_11800323_11802286,chr2L_11800323_11802904,chr2L_11800323_11802370 chr2L_11800155_11800322 chr2L_11799303_11799402;chr2L_11802905_11803004 99.62 98.88 99.44 98.74 99.38 100.00 99.54 99.13 99.44 100.00 100.00 99.31 99.29 100.00 99.44 100.00 100.00 100.00 99.35 99.68 100.00 99.04 98.83 99.58 99.52 100.00 99.62 99.60 97.71 100.00 100.00 100.00 99.38 99.59 99.32 99.45 99.73 100.00 99.71 99.29 98.36 99.67 100.00 99.50 100.00 100.00 100.00 100.00 99.64 98.25 99.61 99.40 100.00 100.00 99.46 100.00 100.00 100.00 K alternative_acceptor cals,I_chr4_1139644_1142084,RI_chr4_1141233_1142084 chr4 - chr4_1136521_1136581 chr4_1136524_1136581 chr4_1136582_1136705;chr4_1135886_1136520 19.10 16.00 13.04 18.64 NA 21.05 27.27 17.91 25.71 20.00 25.00 19.15 21.05 22.22 NA 20.27 19.05 31.58 25.71 19.57 18.18 NA 15.79 17.86 NA NA 23.53 NA NA 20.00 16.67 12.50 6.67 22.73 24.00 NA 26.67 14.29 NA 17.24 14.29 28.85 19.05 25.00 NA 25.81 15.38 13.04 24.29 17.24 14.29 6.67 NA 28.57 12.90 23.81 18.75 12.00 K alternative_donor CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27044867;chr3R_27044771_27045188;chr3R_27044771_27045257;chr3R_27044771_27045132;chr3R_27044771_27045110;chr3R_27044771_27044831;chr3R_27044771_27044990;chr3R_27044771_27044895 chr3R_27044771_27045027 chr3R_27044671_27044770;chr3R_27045258_27045273 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette Ten-m,EI_chr3L_22298865_22299141,I_chr3L_22300015_22300646,I_chr3L_22374182_22399991 chr3L - chr3L_22297630_22300646 chr3L_22297630_22298066;chr3L_22298865_22299141;chr3L_22300015_22300646 chr3L_22298067_22298864;chr3L_22299142_22300014 chr3L_22297346_22297629;chr3L_22300647_22300652 54.55 46.15 54.55 46.67 55.56 42.86 60.00 59.09 56.76 25.00 55.56 68.18 85.71 50.00 44.44 68.75 63.64 50.00 66.67 61.11 54.55 25.93 61.11 50.00 75.00 46.15 47.06 NA 50.00 30.43 63.64 NA 33.33 59.09 60.00 56.25 50.00 36.36 46.67 50.00 33.33 62.50 71.43 47.06 NA 66.67 50.00 46.15 60.71 100.00 60.00 66.67 50.00 NA 45.45 50.00 66.67 66.67 K jcn_only_AA I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10066547_10066616 chr2R_10066547_10066613 chr2R_10066399_10066546;chr2R_10066617_10066759 59.50 63.76 54.79 58.76 56.55 58.79 55.41 60.50 58.39 54.39 60.82 58.65 67.03 57.69 56.64 63.30 59.18 55.56 57.80 60.15 54.49 61.48 57.68 61.04 61.88 56.10 67.69 64.00 59.50 61.62 55.62 58.30 61.73 57.22 63.87 60.96 60.62 61.51 58.68 60.04 56.77 60.14 60.62 61.25 63.02 61.77 55.83 58.60 60.31 63.95 60.40 59.86 58.06 57.75 53.27 54.76 63.94 58.97 K alternative_donor MED26,RE_chr4_803564_803799,RI_chr4_803872_803924,I_chr4_807836_808089 chr4 - chr4_803872_803927 chr4_803872_803924 chr4_803800_803871;chr4_803928_804024 0.00 NA 7.69 0.00 NA NA 2.38 6.98 3.77 NA NA 0.00 6.25 0.00 0.00 4.26 7.69 NA 0.00 2.94 NA NA 5.88 NA NA 0.00 6.67 NA NA NA 3.85 NA NA 2.70 NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K alternative_donor Mmp1,E_chr2R_20560380_20562585,I_chr2R_20564123_20565214,I_chr2R_20569965_20572193 chr2R - chr2R_20560840_20562585 chr2R_20560840_20562495 chr2R_20560775_20560839;chr2R_20562586_20562664 100.00 100.00 98.85 100.00 100.00 100.00 100.00 100.00 100.00 98.13 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.34 100.00 100.00 99.27 100.00 100.00 100.00 99.32 98.81 99.18 100.00 100.00 98.44 99.12 100.00 100.00 99.07 100.00 100.00 99.50 99.34 99.04 100.00 100.00 98.03 100.00 99.35 100.00 98.97 99.33 100.00 100.00 100.00 100.00 100.00 100.00 98.95 100.00 100.00 K cassette Hcf,I_chr4_391984_392875 chr4 + chr4_391984_392875 chr4_391984_392438;chr4_392803_392875 chr4_392439_392802 chr4_391886_391983;chr4_392876_392975 100.00 100.00 100.00 99.25 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.00 98.95 100.00 100.00 98.44 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 98.41 100.00 100.00 98.63 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Aldolase,I_chr3R_22083764_22086684 chr3R - chr3R_22082030_22082654 chr3R_22082029_22082030;chr3R_22082654_22082655 chr3R_22081992_22082029;chr3R_22082655_22082854 11.54 8.64 14.16 32.65 17.39 10.45 14.58 19.61 17.19 24.55 6.86 12.65 17.98 23.44 16.22 14.84 9.64 15.25 5.79 13.04 11.11 23.31 15.46 12.02 10.28 10.00 11.54 27.96 19.63 9.25 14.63 10.14 9.24 13.49 13.01 10.66 8.58 8.92 9.44 13.41 8.99 13.26 16.42 7.80 3.73 10.28 9.35 16.15 12.68 10.14 9.70 9.38 8.24 7.04 12.28 8.17 8.38 9.57 K intron_retention CG4768 chrX + chrX_16688670_16688728 chrX_16688669_16688670;chrX_16688728_16688729 chrX_16688483_16688669;chrX_16688729_16688956 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 2.60 0.00 0.00 0.00 0.00 1.61 3.12 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K alternative_acceptor Pgi,I_chr2R_4801076_4801329 chr2R - chr2R_4801076_4801214;chr2R_4801134_4801214 chr2R_4801072_4801214 chr2R_4801215_4801631;chr2R_4800976_4801071 0.00 0.00 2.17 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 NA 0.00 NA NA K intron_retention CG30118,I_chr2R_14320281_14325712,I_chr2R_14325118_14325712 chr2R - chr2R_14325483_14325712 chr2R_14325482_14325483;chr2R_14325712_14325713 chr2R_14325445_14325482;chr2R_14325713_14325780 0.00 0.00 NA 3.23 NA NA 6.25 4.35 4.55 NA NA 0.00 NA 0.00 NA 4.35 NA 0.00 5.56 0.00 NA NA NA 0.00 NA NA 0.00 13.33 NA NA 0.00 0.00 0.00 4.76 NA NA 0.00 NA NA 5.56 NA 0.00 NA 6.67 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 K intron_retention I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10065344,I_chr2R_10064197_10068715,I_chr2R_10067437_10068984,I_chr2R_10068194_10068715 chr2R + chr2R_10064197_10065389 chr2R_10064196_10064197;chr2R_10065389_10065390 chr2R_10064117_10064196;chr2R_10065390_10065444 96.55 100.00 96.88 94.44 90.48 100.00 66.67 97.62 94.92 100.00 92.00 100.00 100.00 95.45 97.22 98.08 100.00 96.77 96.97 100.00 100.00 96.55 95.24 96.88 96.30 100.00 100.00 93.75 87.88 94.44 100.00 95.00 91.49 97.92 95.45 100.00 97.56 96.43 93.18 96.23 100.00 92.59 95.00 100.00 85.19 97.14 91.30 97.83 93.55 95.00 89.74 90.00 96.15 100.00 97.22 88.89 94.44 97.06 K jcn_only_AA RpL17,I_chrX_6637182_6638207 chrX - chrX_6637182_6638228 chrX_6638155_6638228 chrX_6638229_6638235 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 2.33 0.00 0.00 NA 0.00 0.00 2.63 0.00 0.00 0.00 K intron_retention CG30015,I_chr2R_6743814_6744285 chr2R - chr2R_6736046_6736098 chr2R_6736045_6736046;chr2R_6736098_6736099 chr2R_6735958_6736045;chr2R_6736099_6736765 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 1.98 4.35 0.00 4.40 1.49 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 2.50 2.56 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 3.57 0.00 K alternative_donor Sep4,I_chrX_16588453_16588650,I_chrX_16588453_16588983 chrX - chrX_16588405_16588650;chrX_16588405_16589150 chrX_16588405_16588983 chrX_16588353_16588404;chrX_16589151_16589177 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor brm,I_chr3L_15968197_15968325 chr3L - chr3L_15975300_15975367 chr3L_15975312_15975367 chr3L_15975368_15975432;chr3L_15975223_15975299 51.52 45.65 37.50 62.50 50.00 60.00 47.06 45.83 45.45 42.86 57.14 54.35 56.25 45.83 48.00 75.00 63.64 51.72 64.71 54.90 57.14 46.81 45.78 45.00 45.45 62.07 52.94 81.25 56.25 45.90 61.11 50.00 40.28 58.06 52.78 50.82 45.37 51.11 50.00 60.44 60.87 47.83 53.33 60.00 51.52 45.95 40.54 63.38 60.00 45.95 55.10 51.72 43.75 39.29 57.14 42.42 30.77 55.26 K alternative_donor ctp,I_chrX_4582382_4585669,I_chrX_4582627_4585669,RI_chrX_4582706_4585629,RI_chrX_4582706_4592329 chrX + chrX_4582325_4585669;chrX_4582351_4585669 chrX_4582706_4585669 chrX_4585670_4585729;chrX_4582282_4582324 1.54 1.66 2.22 1.89 1.18 1.97 2.50 2.17 1.47 1.14 1.35 1.42 2.21 1.54 1.03 1.88 1.52 1.76 2.52 0.76 0.66 0.00 1.41 1.75 2.83 1.92 1.31 3.70 1.60 1.43 1.65 0.88 1.15 1.42 3.17 0.92 1.57 0.00 1.79 2.07 2.22 1.35 2.41 1.40 3.15 2.04 0.62 2.54 1.85 0.97 1.51 1.36 0.98 0.98 1.47 1.66 0.97 2.45 K intron_retention E_chr3R_6935653_7037028,nocturnin,RI_chr3R_7026291_7032627,I_chr3R_7029508_7030286 chr3R + chr3R_7033204_7033270 chr3R_7033203_7033204;chr3R_7033270_7033271 chr3R_7033082_7033203;chr3R_7033271_7033903 0.00 0.00 0.00 3.45 0.00 0.00 5.26 0.00 3.39 0.00 NA 6.25 0.00 3.85 0.00 2.44 0.00 4.00 0.00 1.75 0.00 9.09 2.86 8.33 NA 10.53 3.23 0.00 22.73 0.00 0.00 NA 0.00 3.33 NA 0.00 0.00 0.00 0.00 0.00 5.56 3.77 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 5.56 K intron_retention CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20824494_20825667 chr2L_20824493_20824494;chr2L_20825667_20825668 chr2L_20824482_20824493;chr2L_20825668_20825758 78.41 82.76 57.84 65.22 39.29 63.16 58.97 45.24 55.71 89.58 78.85 72.43 46.51 61.11 56.64 59.14 30.91 62.35 52.63 61.69 65.67 97.37 95.88 95.00 95.24 70.30 96.34 94.03 91.67 84.78 63.16 76.92 60.00 51.72 88.16 91.86 87.72 97.87 94.17 88.24 80.30 56.50 44.12 85.71 65.83 89.36 90.79 78.41 60.96 95.65 95.51 92.00 89.71 95.28 55.56 87.84 81.33 54.46 K intron_retention Pect,I_chr2L_13207997_13208109,E_chr2L_13208285_13210076 chr2L + chr2L_13209846_13209910 chr2L_13209845_13209846;chr2L_13209910_13209911 chr2L_13209660_13209845;chr2L_13209911_13210848 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.49 0.00 0.00 0.74 0.00 0.00 0.00 0.34 0.18 0.00 0.00 0.00 0.00 0.00 0.00 1.87 2.05 0.00 0.40 0.00 0.00 0.00 0.57 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD sec8,I_chr3R_1583812_1583897 chr3R - chr3R_1583812_1583897 chr3R_1583812_1583870 chr3R_1583712_1583811;chr3R_1583898_1583997 100.00 100.00 100.00 98.89 100.00 98.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.69 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.36 100.00 100.00 100.00 98.50 100.00 98.82 99.20 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 98.70 100.00 100.00 98.59 97.37 100.00 100.00 K intron_retention CG10082,E_chr2R_17533874_17544072,RI_chr2R_17537544_17537615,I_chr2R_17541516_17542279,I_chr2R_17541573_17542279,I_chr2R_17543813_17543881 chr2R + chr2R_17540069_17540417 chr2R_17540068_17540069;chr2R_17540417_17540418 chr2R_17539942_17540068;chr2R_17540418_17540517 100.00 NA 100.00 87.50 NA 90.00 100.00 100.00 95.45 NA NA 95.83 NA 100.00 NA 94.74 NA NA 100.00 95.24 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 91.67 NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA N jcn_only_AD noncoding_14363 chr3LHet - chr3LHet_709742_709797 chr3LHet_709742_709795 chr3LHet_709691_709741;chr3LHet_709798_709832 69.57 NA NA NA NA NA 50.00 NA 65.22 NA NA 57.50 NA NA NA NA NA NA NA 100.00 NA 60.00 NA 100.00 NA NA NA NA NA NA 64.71 NA NA 35.00 NA NA NA 100.00 100.00 62.71 NA 100.00 NA 69.70 NA NA NA 69.44 100.00 NA 61.90 100.00 NA NA NA NA NA 100.00 K intron_retention CG11092 chrX + chrX_13717121_13717183 chrX_13717120_13717121;chrX_13717183_13717184 chrX_13716881_13717120;chrX_13717184_13717364 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 1.86 0.00 0.00 K alternative_donor CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4839655;chr3R_4839215_4839561;chr3R_4839215_4839851;chr3R_4839215_4839889;chr3R_4839215_4839799 chr3R_4839215_4839728 chr3R_4839038_4839214;chr3R_4839890_4839901 0.00 0.00 0.00 9.09 20.00 0.00 12.50 0.00 9.52 0.00 50.00 27.27 0.00 0.00 11.11 8.33 16.67 0.00 14.29 6.67 0.00 0.00 25.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 10.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.65 9.09 0.00 0.00 22.22 0.00 0.00 0.00 22.22 0.00 0.00 0.00 0.00 11.11 0.00 0.00 0.00 K jcn_only_AD CG1572,RI_chrX_11450380_11450442,I_chrX_11450380_11452520 chrX - chrX_11450380_11450442;chrX_11450380_11452565 chrX_11450380_11452571 chrX_11450280_11450379;chrX_11452572_11452620 95.79 96.18 95.48 95.43 96.97 96.43 97.45 95.76 96.92 94.98 97.61 95.79 97.25 96.67 92.20 96.38 97.41 97.09 96.15 95.99 96.63 95.75 94.74 96.32 95.92 97.04 94.41 93.84 94.82 94.25 96.69 94.82 95.32 96.69 96.31 95.88 96.28 96.28 97.49 94.23 95.38 96.40 97.27 95.35 93.32 95.69 95.21 95.18 95.46 95.60 95.31 96.40 93.94 94.21 96.41 95.36 95.48 95.07 K intron_retention Tsp42Ee,I_chr2R_2899841_2899895,RI_chr2R_2904593_2904783 chr2R + chr2R_2899841_2904517 chr2R_2899840_2899841;chr2R_2904517_2904518 chr2R_2899753_2899840;chr2R_2904518_2904592 18.18 NA NA NA NA NA 11.11 NA NA NA NA NA NA NA 25.00 41.67 NA NA NA NA NA 16.67 NA NA NA NA 25.00 17.65 18.18 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor bip2,RI_chr4_481674_487126,RI_chr4_483128_487126,RI_chr4_486609_487126 chr4 - chr4_486609_487126;chr4_485855_487126 chr4_485942_487126 chr4_487127_487226;chr4_485750_485854 88.89 92.86 87.50 72.73 85.71 90.00 90.24 91.67 86.96 85.71 88.89 86.84 100.00 90.00 86.96 87.10 87.50 64.71 90.00 85.29 88.24 NA 88.24 91.67 100.00 81.82 88.24 88.89 100.00 80.00 92.00 NA 100.00 87.50 100.00 100.00 100.00 92.86 92.86 90.00 NA 94.44 100.00 95.65 66.67 80.00 90.00 77.78 86.49 71.43 88.24 85.71 100.00 100.00 91.67 85.71 NA 66.67 N intron_retention stc chr2L + chr2L_15114214_15114448 chr2L_15114213_15114214;chr2L_15114448_15114449 chr2L_15114049_15114213;chr2L_15114449_15115753 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 76.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Pfk,I_chr2R_5999081_6000140,E_chr2R_6001157_6001630 chr2R + chr2R_6000676_6002421 chr2R_6000675_6000676;chr2R_6002421_6002422 chr2R_6000521_6000675;chr2R_6002422_6002610 43.75 NA NA NA NA NA 81.82 NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 46.67 NA 46.15 NA 43.75 30.00 26.67 NA NA NA NA NA NA NA 32.00 35.29 29.17 50.00 NA NA NA 30.77 NA NA NA NA NA NA 43.75 60.00 NA NA NA NA NA NA K jcn_only_AA tral,I_chr3L_12512171_12512251 chr3L + chr3L_12511768_12511832 chr3L_12511768_12511829 chr3L_12511538_12511767;chr3L_12511833_12512170 12.50 10.45 13.33 15.85 11.76 13.50 11.16 10.07 10.87 12.78 12.69 13.95 11.72 12.30 15.64 9.64 17.73 13.01 12.50 12.59 14.05 11.96 9.73 12.33 10.55 14.38 10.43 14.29 12.36 11.70 15.50 16.22 14.01 9.17 15.16 17.04 12.61 11.46 12.86 10.33 9.80 12.14 14.94 13.65 7.99 10.11 8.78 15.52 15.87 8.44 9.77 10.93 14.18 10.16 16.24 11.87 13.72 13.94 K alternative_donor CG4502,I_chr2L_7196721_7196787,I_chr2L_7196858_7204207 chr2L - chr2L_7196858_7203942;chr2L_7196858_7203934 chr2L_7196858_7203938 chr2L_7196788_7196857;chr2L_7203943_7204239 72.73 75.00 78.57 73.68 83.33 76.92 71.43 76.19 72.41 NA 78.57 66.67 83.33 66.67 68.75 75.00 80.00 54.55 71.43 73.68 66.67 NA 66.67 66.67 NA 66.67 88.89 NA 66.67 75.00 76.92 71.43 69.23 71.43 75.00 72.73 NA NA 50.00 85.71 80.00 78.26 64.29 75.00 NA 82.35 71.43 65.22 60.00 71.43 72.73 77.78 NA NA 84.21 66.67 NA 66.67 K intron_retention Tapdelta chr2R - chr2R_7258219_7258277 chr2R_7258218_7258219;chr2R_7258277_7258278 chr2R_7257752_7258218;chr2R_7258278_7258694 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG16971,I_chr3L_225856_225909,RI_chr3L_225919_226004,noncoding_9600,RI_chr3L_229245_229590,I_chr3L_229245_229599,I_chr3L_229245_230186,I_chr3L_229653_229708 chr3L + chr3L_229245_229599 chr3L_229244_229245;chr3L_229599_229600 chr3L_229145_229244;chr3L_229600_229652 99.80 100.00 99.34 100.00 100.00 99.34 99.74 100.00 99.85 99.34 99.43 100.00 99.64 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.53 99.49 99.71 99.68 99.41 99.24 99.19 99.37 99.07 100.00 99.60 100.00 99.40 100.00 99.44 99.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.72 99.33 99.28 100.00 98.71 99.80 99.66 99.75 100.00 99.31 100.00 100.00 99.57 100.00 99.62 K jcn_only_AA CG7381,I_chr3R_8796541_8802728 chr3R - chr3R_8795968_8796044 chr3R_8795971_8796044 chr3R_8796045_8796162;chr3R_8795353_8795967 94.12 93.75 100.00 95.24 97.14 NA 100.00 94.64 93.41 NA 100.00 91.84 95.24 100.00 93.75 94.12 91.30 95.83 92.68 95.35 89.29 95.24 NA NA NA NA NA NA NA NA 97.67 95.45 93.75 97.73 91.67 NA 92.00 NA 92.59 100.00 NA 91.18 96.67 NA NA 93.94 NA 86.36 94.55 NA 90.62 NA NA 91.67 91.30 NA NA NA K intron_retention osa chr3R - chr3R_13523885_13523951 chr3R_13523884_13523885;chr3R_13523951_13523952 chr3R_13523703_13523884;chr3R_13523952_13524686 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_donor Aldolase,I_chr3R_22083764_22086684 chr3R - chr3R_22082030_22082256;chr3R_22082030_22082195 chr3R_22082030_22082575 chr3R_22081992_22082029 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,alpha4GT1,RI_chr2L_3022346_3022422,CG3605,CG17258 chr2L - chr2L_3022346_3022422 chr2L_3022369_3022422 chr2L_3022423_3022522;chr2L_3022246_3022345 98.57 94.44 97.65 97.17 100.00 98.25 99.06 100.00 99.33 98.57 100.00 100.00 100.00 100.00 96.55 96.70 98.11 97.10 100.00 99.21 89.58 100.00 94.67 100.00 100.00 100.00 96.83 100.00 100.00 97.83 96.15 100.00 97.06 100.00 97.83 95.92 100.00 100.00 96.97 98.67 98.00 98.61 95.00 98.57 98.15 100.00 96.67 98.08 96.40 98.36 100.00 98.08 92.31 100.00 100.00 94.74 98.73 100.00 K cassette CG11009,I_chr3L_12844823_12845526,I_chr3L_12845441_12845526 chr3L + chr3L_12845378_12845715 chr3L_12845378_12845529;chr3L_12845622_12845715 chr3L_12845530_12845621 chr3L_12845344_12845377;chr3L_12845716_12845816 68.85 72.22 70.83 56.63 57.14 70.59 36.36 50.00 65.71 44.44 54.55 69.23 95.00 62.50 55.00 57.58 78.95 50.00 66.67 54.90 55.56 96.97 66.67 70.00 60.00 60.00 82.86 73.91 91.67 76.92 59.09 72.92 81.82 77.42 80.00 88.89 66.67 61.54 76.19 86.11 66.67 59.46 83.33 80.77 76.92 68.85 73.81 66.67 63.16 70.69 75.68 63.64 75.00 74.07 62.50 68.00 86.21 64.29 K intron_retention kuk chr3R + chr3R_12908866_12908892 chr3R_12908865_12908866;chr3R_12908892_12908893 chr3R_12908386_12908865;chr3R_12908893_12910550 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG5745,I_chr3R_16928299_16928444 chr3R + chr3R_16928299_16928444 chr3R_16928384_16928444 chr3R_16928445_16928544;chr3R_16928199_16928298 100.00 97.78 100.00 100.00 100.00 95.45 100.00 96.55 100.00 100.00 100.00 97.92 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.57 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 96.00 97.37 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Abl,I_chr3L_16622304_16639909,RI_chr3L_16652567_16654512 chr3L - chr3L_16618375_16619627 chr3L_16618375_16619372 chr3L_16616737_16618374;chr3L_16619628_16619716 8.70 2.00 8.91 41.96 1.23 2.99 21.36 9.35 6.83 9.52 21.79 19.08 17.31 4.35 7.62 9.52 6.74 5.68 14.44 8.70 9.09 16.77 8.90 4.55 15.91 24.68 18.18 6.54 12.50 9.93 7.53 3.92 15.29 5.88 8.04 27.71 8.99 7.55 6.34 4.57 17.28 4.47 1.56 13.86 7.63 2.04 2.99 5.84 4.88 10.14 7.34 9.46 4.29 1.69 4.39 9.21 9.72 10.78 K jcn_only_AA CG1646,RI_chr3R_24638061_24638116,RI_chr3R_24638209_24638280,I_chr3R_24641816_24641874 chr3R + chr3R_24637877_24637948;chr3R_24637877_24637958 chr3R_24637877_24638116 chr3R_24637841_24637876;chr3R_24638117_24638208 93.07 90.16 87.13 88.97 89.87 94.12 75.68 91.67 92.11 93.33 89.41 97.77 85.45 90.91 93.07 87.21 91.18 92.47 87.78 93.70 92.77 82.35 90.91 89.66 92.19 86.14 91.07 84.31 95.58 97.46 88.10 95.80 99.05 93.10 92.75 92.31 96.07 91.86 92.92 94.08 98.67 92.31 93.65 95.05 98.25 98.06 95.40 96.55 96.89 94.12 96.20 95.24 93.94 100.00 94.57 93.33 93.75 97.77 K alternative_donor Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754284_15755256 chrX_15754356_15755256 chrX_15755257_15755267;chrX_15754256_15754283 50.00 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Vap-33-1 chrX + chrX_3843206_3843513;chrX_3843210_3843513;chrX_3843406_3843513;chrX_3843214_3843513 chrX_3843099_3843513 chrX_3843514_3843746;chrX_3843030_3843098 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.45 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Tim9a chrX + chrX_13279629_13279693 chrX_13279628_13279629;chrX_13279693_13279694 chrX_13279533_13279628;chrX_13279694_13279946 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 12.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL37a,RE_chrX_15033150_15033287 chrX - chrX_15033148_15033284 chrX_15033147_15033148;chrX_15033284_15033285 chrX_15033050_15033147;chrX_15033285_15033449 0.14 0.09 0.14 0.16 0.07 0.18 0.39 0.13 0.16 0.19 0.19 0.08 0.15 0.15 0.12 0.14 0.15 0.05 0.09 0.15 0.07 0.25 0.13 0.18 0.39 0.48 0.21 0.35 0.41 0.07 0.29 0.22 0.10 0.13 0.22 0.74 0.10 0.04 0.10 0.12 0.51 0.14 0.07 0.09 0.33 0.13 0.13 0.25 0.22 0.14 0.22 0.19 0.06 0.11 0.15 0.12 0.14 0.08 K jcn_only_AA AGO2 chr3L + chr3L_15553679_15553749 chr3L_15553679_15553740 chr3L_15553308_15553678;chr3L_15553750_15553871 99.48 99.73 97.64 100.00 100.00 100.00 99.22 99.70 99.64 99.30 99.08 99.47 100.00 98.51 99.47 99.60 100.00 98.79 98.63 99.59 99.05 99.27 99.79 100.00 100.00 98.86 99.36 99.10 99.40 99.17 100.00 99.43 99.47 99.64 99.54 99.49 99.80 98.31 99.69 99.16 100.00 99.48 98.81 99.48 99.44 100.00 98.63 99.05 100.00 98.66 99.39 100.00 98.58 99.55 99.12 99.72 99.65 100.00 K intron_retention Rpt3 chrX + chrX_11019382_11019455 chrX_11019381_11019382;chrX_11019455_11019456 chrX_11019111_11019381;chrX_11019456_11019539 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention lva,CG6428 chrX - chrX_3850279_3850339 chrX_3850278_3850279;chrX_3850339_3850340 chrX_3850082_3850278;chrX_3850340_3850460 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17912,I_chr2L_16748617_16749055,I_chr2L_16749189_16749266 chr2L + chr2L_16746617_16749055 chr2L_16746616_16746617;chr2L_16749055_16749056 chr2L_16746227_16746616;chr2L_16749056_16749155 55.62 55.00 62.50 88.24 72.73 70.00 93.33 81.25 76.19 23.08 NA 55.00 NA 46.67 56.25 70.00 63.64 60.00 71.43 64.00 NA 41.38 44.12 34.48 50.00 88.89 57.14 25.00 17.65 58.82 60.00 NA NA 68.75 NA 46.67 45.00 44.83 33.33 30.00 NA 65.00 NA 50.00 36.36 87.50 33.33 52.94 65.00 38.46 52.17 70.59 35.71 NA 71.43 73.33 50.00 53.33 K intron_retention Ranbp16,I_chrX_15826655_15827277 chrX - chrX_15825836_15825916 chrX_15825835_15825836;chrX_15825916_15825917 chrX_15825340_15825835;chrX_15825917_15826019 100.00 100.00 100.00 98.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 98.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG7177 chr3L - chr3L_21537369_21537425 chr3L_21537368_21537369;chr3L_21537425_21537426 chr3L_21536998_21537368;chr3L_21537426_21537597 0.00 0.00 0.00 0.00 NA 0.00 7.14 2.94 0.00 NA NA 2.50 NA 6.25 0.00 0.00 NA 0.00 3.57 0.00 NA 0.00 0.00 0.00 NA 3.85 7.41 10.53 NA NA 0.00 0.00 NA 3.85 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 5.26 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 K cassette CG13900,I_chr3L_830745_830907 chr3L - chr3L_830342_830907 chr3L_830342_830621;chr3L_830729_830907 chr3L_830622_830728 chr3L_830034_830341;chr3L_830908_831007 15.36 12.85 14.19 12.96 14.50 14.44 5.81 17.85 12.13 10.85 15.36 11.89 13.94 15.98 14.66 20.08 14.71 11.21 16.17 13.89 12.85 18.26 14.10 15.69 5.90 4.55 18.58 25.29 9.72 15.91 36.19 23.49 16.48 13.87 16.34 5.44 12.44 14.35 13.36 17.72 9.96 12.28 13.86 16.26 19.89 17.84 21.78 21.40 17.73 22.13 19.73 21.70 17.62 15.98 14.37 22.05 19.16 24.77 K alternative_donor l(1)G0289,I_chrX_10254197_10254506,I_chrX_10254197_10259575 chrX - chrX_10254197_10260156 chrX_10254197_10254506 chrX_10254097_10254196;chrX_10260157_10260387 0.57 0.48 0.37 1.15 1.04 0.43 1.49 1.57 1.15 0.53 1.00 0.61 1.28 0.91 0.83 0.63 1.25 0.57 1.12 0.47 0.63 0.55 0.54 0.40 0.40 0.58 0.72 1.16 0.39 0.40 0.38 0.70 0.91 1.02 0.38 0.66 0.32 0.47 0.26 0.37 0.87 0.54 1.63 0.37 0.60 0.38 0.45 0.51 0.74 0.57 0.33 0.57 0.00 0.00 0.44 0.60 0.68 0.40 K intron_retention CG3635 chr2L + chr2L_22183467_22183607 chr2L_22183466_22183467;chr2L_22183607_22183608 chr2L_22183394_22183466;chr2L_22183608_22183915 40.89 37.93 28.04 28.26 36.92 38.96 54.36 30.43 41.43 55.22 35.00 41.10 40.43 45.33 33.61 42.11 36.59 30.59 38.54 40.89 33.33 25.13 32.09 41.35 52.05 39.71 36.18 40.26 53.57 40.19 36.07 46.43 32.23 36.64 34.44 62.67 54.63 45.71 42.22 44.81 47.22 35.68 32.81 53.15 35.40 47.17 45.39 48.90 41.01 35.29 44.96 50.85 41.90 45.26 43.69 43.36 39.75 43.45 N intron_retention CHES-1-like,I_chrX_7584030_7588818 chrX - chrX_7588919_7590509 chrX_7588918_7588919;chrX_7590509_7590510 chrX_7588819_7588918;chrX_7590510_7590564 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 93.85 NA 100.00 100.00 100.00 100.00 100.00 90.22 100.00 100.00 89.09 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA NA K alternative_donor alpha-Man-I,I_chrX_10218352_10219759,I_chrX_10218390_10219759 chrX - chrX_10218352_10219846;chrX_10218352_10219816;chrX_10218352_10219918;chrX_10218352_10219759;chrX_10218352_10219823;chrX_10218352_10219708 chrX_10218352_10219665 chrX_10218290_10218351;chrX_10219919_10219979 12.50 14.29 16.67 7.69 16.67 11.11 10.00 11.76 10.53 0.00 20.00 10.00 NA 11.11 12.50 14.29 16.67 16.67 12.50 14.29 16.67 11.11 12.50 14.29 14.29 28.57 12.50 NA NA 11.11 14.29 NA 14.29 16.67 NA 16.67 0.00 0.00 NA 12.50 0.00 15.38 25.00 0.00 NA 0.00 NA 22.22 13.33 0.00 20.00 0.00 20.00 NA 11.11 0.00 20.00 0.00 K intron_retention CG33558,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,I_chr2R_2820149_2820628,EI_chr2R_2820947_2821570,CREI_chr2R_2832933_2850384 chr2R - chr2R_2817876_2819347 chr2R_2817875_2817876;chr2R_2819347_2819348 chr2R_2817851_2817875;chr2R_2819348_2819447 76.92 65.00 88.89 50.00 NA NA NA NA 83.33 NA NA 72.41 NA 100.00 88.89 90.91 76.92 NA NA 73.08 NA 66.67 64.71 66.67 80.00 NA 75.00 NA 66.67 76.47 90.00 63.64 80.00 63.64 69.23 93.33 69.44 76.47 76.67 72.00 92.31 71.43 87.50 90.91 81.25 95.45 64.71 91.67 87.50 54.17 77.78 76.92 84.62 62.50 100.00 80.95 86.67 92.31 K alternative_donor CG18012 chr3R - chr3R_13635522_13635582 chr3R_13635522_13635579 chr3R_13635117_13635521;chr3R_13635583_13636140 99.38 100.00 100.00 100.00 98.57 98.61 98.81 100.00 99.32 100.00 100.00 100.00 100.00 100.00 98.80 98.48 98.25 100.00 100.00 99.36 100.00 98.11 98.63 100.00 100.00 98.28 98.77 100.00 100.00 97.87 100.00 97.92 99.02 100.00 97.83 98.15 98.28 100.00 99.20 100.00 98.00 99.38 98.41 98.68 100.00 98.68 98.85 100.00 97.52 100.00 98.41 100.00 100.00 100.00 98.72 100.00 98.94 100.00 K jcn_only_AA l(2)gl,I_chr2L_17213_21135,RI_chr2L_20021_20830,I_chr2L_20974_21065 chr2L - chr2L_20016_21065 chr2L_20021_21065 chr2L_21066_21106;chr2L_19921_20015 90.48 NA NA NA NA NA NA 90.48 88.89 NA NA 93.33 NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 86.96 NA NA NA NA NA NA NA NA NA 95.00 NA NA NA NA 91.67 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG11148,RI_chr4_886921_887162 chr4 - chr4_886921_887162;chr4_886921_887595;chr4_886921_887591 chr4_886921_887601 chr4_886821_886920;chr4_887602_887637 35.85 NA 31.25 45.76 25.58 16.67 35.71 44.12 35.82 NA 58.33 35.85 35.48 22.50 53.49 35.90 33.33 50.00 45.45 36.62 48.00 NA 33.33 NA 20.00 25.00 NA NA 25.81 NA 39.13 NA 31.82 44.26 NA 29.17 NA NA NA 31.25 NA 44.78 55.88 40.74 NA NA NA 40.38 29.47 NA 50.00 NA NA NA 31.71 NA NA 37.21 K jcn_only_AD CG1674,F_chr4_252231_252560,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_251522_252560;chr4_252254_252560 chr4_252227_252560 chr4_252561_252603;chr4_251483_251521 86.96 NA NA NA NA NA NA 86.96 95.45 NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Socs16D chrX - chrX_17717337_17717410 chrX_17717336_17717337;chrX_17717410_17717411 chrX_17717224_17717336;chrX_17717411_17719514 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.88 1.43 0.00 0.00 0.00 0.00 2.44 6.35 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Xrp1,I_chr3R_14741648_14750799,I_chr3R_14750298_14750799 chr3R + chr3R_14745235_14746134 chr3R_14745234_14745235;chr3R_14746134_14746135 chr3R_14745145_14745234;chr3R_14746135_14747041 2.90 2.37 2.35 1.45 3.15 1.39 15.46 3.36 4.09 3.25 3.38 3.27 2.27 2.23 4.00 3.68 4.73 2.58 3.70 4.40 4.67 5.29 2.80 1.71 4.33 2.46 3.43 10.08 6.59 4.11 0.75 2.45 1.96 4.32 2.33 2.94 3.96 2.15 2.64 2.53 2.26 3.37 3.90 2.44 2.70 1.79 1.12 2.90 4.11 1.09 3.70 1.74 0.00 2.24 3.96 2.53 2.97 2.08 K jcn_only_AA R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083637_8089393 chr2L_8083637_8089184 chr2L_8083592_8083636;chr2L_8089394_8089493 60.72 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 71.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor E(bx),I_chr3L_246324_246699 chr3L - chr3L_246324_246885;chr3L_246324_246438;chr3L_246324_246408;chr3L_246324_246794;chr3L_246324_246388;chr3L_246324_246427 chr3L_246324_246382 chr3L_246224_246323;chr3L_246886_246901 45.30 38.10 52.00 51.28 42.11 37.50 41.82 43.75 41.54 46.15 47.62 48.08 44.12 30.77 44.44 39.62 44.00 45.45 45.16 47.06 38.10 52.63 50.00 43.75 37.50 41.67 56.00 40.00 50.00 50.00 40.62 33.33 56.25 43.40 46.67 33.33 52.00 53.85 43.75 59.26 50.00 46.94 39.29 62.50 NA 50.00 50.00 50.00 40.68 25.00 37.93 50.00 25.00 100.00 50.00 60.00 50.00 33.33 K intron_retention aux chr3R + chr3R_47709_47779 chr3R_47708_47709;chr3R_47779_47780 chr3R_47502_47708;chr3R_47780_47919 0.00 1.56 0.00 3.85 0.00 0.00 2.33 1.23 0.00 0.00 2.13 1.89 0.00 0.00 0.00 1.32 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 2.50 4.92 2.11 0.00 1.67 0.00 0.00 0.00 2.38 2.22 0.00 7.02 0.00 0.00 1.20 0.00 0.00 1.65 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 2.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD 4EHP,RI_chr3R_19927769_19928262,Syx1A chr3R - chr3R_19927769_19932546;chr3R_19927769_19928262 chr3R_19927769_19929293 chr3R_19927676_19927768;chr3R_19932547_19933006 97.98 100.00 98.04 97.67 91.84 97.78 97.73 96.67 96.99 NA NA 98.75 100.00 98.04 98.08 92.86 98.48 95.24 95.92 93.67 NA 94.74 98.41 100.00 100.00 100.00 97.92 92.00 95.45 96.00 98.11 NA 97.78 98.88 100.00 92.86 100.00 96.23 95.45 97.26 NA 98.80 100.00 98.41 96.88 100.00 100.00 96.49 98.85 NA 97.62 95.92 100.00 NA 100.00 100.00 97.50 100.00 K alternative_acceptor CG11107 chr2R + chr2R_3276687_3276751 chr2R_3276687_3276748 chr2R_3276213_3276686;chr2R_3276752_3277015 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14199 chrX - chrX_19388685_19388759 chrX_19388684_19388685;chrX_19388759_19388760 chrX_19388395_19388684;chrX_19388760_19388869 3.85 2.56 3.48 11.11 4.11 4.44 19.28 2.17 4.57 2.08 7.14 4.82 3.39 2.22 3.85 3.74 0.00 4.39 1.09 4.46 5.43 22.86 3.54 1.45 11.94 11.58 10.91 3.17 9.78 2.94 5.45 3.45 3.70 3.10 2.53 11.59 4.55 2.86 5.81 5.20 4.35 3.43 2.78 3.03 3.37 2.35 4.55 1.98 3.70 3.74 8.08 3.12 4.58 4.12 6.78 4.29 4.60 0.64 K intron_retention CG17549,I_chr2L_19387937_19387993,I_chr2L_19388570_19389922 chr2L - chr2L_19387770_19387861 chr2L_19387769_19387770;chr2L_19387861_19387862 chr2L_19387538_19387769;chr2L_19387862_19387936 27.27 36.84 43.75 15.38 23.53 38.89 29.17 47.83 38.78 34.00 59.09 31.03 33.33 40.00 52.38 58.33 NA 68.75 40.00 26.09 50.00 16.46 14.29 18.97 22.22 35.29 14.06 10.47 19.18 27.27 50.00 30.00 35.56 21.05 26.32 27.59 16.13 25.00 14.10 38.64 26.19 27.27 NA 21.31 18.00 31.37 13.91 50.00 32.35 3.30 31.58 26.09 13.21 20.41 36.36 7.55 7.25 20.00 N alternative_donor CG32594 chrX + chrX_14927496_14927638;chrX_14927381_14927638;chrX_14926607_14927638 chrX_14927033_14927638 chrX_14927639_14928125;chrX_14925576_14926606 0.80 1.05 1.13 0.00 0.00 0.62 1.66 0.50 0.80 0.93 0.00 0.77 2.73 1.02 1.12 1.63 0.76 0.00 0.00 0.29 0.00 12.63 0.48 0.50 1.77 0.00 1.06 1.94 1.32 0.93 0.00 0.00 0.00 1.25 0.78 1.41 0.76 1.09 0.84 0.38 0.66 0.38 0.85 1.11 0.83 0.39 1.05 0.61 0.83 1.38 0.92 2.11 0.74 0.62 0.00 1.23 0.61 1.12 K alternative_donor mfrn,I_chr3R_23770737_23770817,I_chr3R_23771063_23772599 chr3R - chr3R_23770737_23770817 chr3R_23770737_23770798 chr3R_23770669_23770736;chr3R_23770818_23770917 100.00 98.33 100.00 97.96 97.50 97.67 98.51 100.00 99.02 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.57 100.00 100.00 98.95 100.00 98.44 100.00 98.82 100.00 100.00 98.04 98.67 100.00 97.87 100.00 100.00 100.00 100.00 100.00 99.06 98.96 98.04 98.72 100.00 100.00 97.83 100.00 98.53 97.30 100.00 98.82 98.80 98.04 100.00 100.00 97.83 98.18 98.86 100.00 K intron_retention Pdp,RI_chrX_7626915_7627016,RI_chrX_7626915_7627048 chrX - chrX_7626915_7627020 chrX_7626914_7626915;chrX_7627020_7627021 chrX_7626815_7626914;chrX_7627021_7627116 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 8.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG5953,snoRNA:Me28S-C1237 chr2L - chr2L_16528440_16532720;chr2L_16528440_16532707 chr2L_16528440_16532458 chr2L_16527390_16528439;chr2L_16532721_16532862 7.41 NA 9.09 NA NA NA 28.57 10.53 12.00 NA 0.00 0.00 NA NA 7.69 13.33 NA NA 7.14 7.41 0.00 NA 10.00 NA NA NA 11.11 12.50 NA 0.00 10.00 NA NA 4.76 0.00 NA NA NA 0.00 7.69 NA 7.41 11.11 8.33 NA 0.00 0.00 4.00 10.00 NA 9.09 NA NA 0.00 NA 0.00 NA 0.00 K intron_retention CG9715 chr3L + chr3L_16838610_16838667 chr3L_16838609_16838610;chr3L_16838667_16838668 chr3L_16838475_16838609;chr3L_16838668_16838989 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 1.56 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG11334,I_chr3R_27286879_27286943,I_chr3R_27286879_27287189,I_chr3R_27287691_27288117,F_chr3R_27287720_27288551 chr3R - chr3R_27286879_27287535 chr3R_27286879_27286943 chr3R_27286779_27286878;chr3R_27287536_27287684 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Dyrk3,I_chr4_1231226_1233305,I_chr4_1233845_1234170 chr4 - chr4_1233242_1233305 chr4_1233241_1233242;chr4_1233305_1233306 chr4_1232379_1233241;chr4_1233306_1233405 0.00 0.00 0.00 16.22 NA 0.00 9.52 13.89 12.00 NA 0.00 11.43 2.63 0.00 0.00 16.67 0.00 7.14 3.57 0.00 NA NA NA NA NA 4.76 6.25 NA NA 0.00 8.00 NA 0.00 9.26 NA 0.00 NA NA NA 0.00 NA 2.27 0.00 NA NA NA NA 0.00 10.53 NA 0.00 NA NA NA 0.00 NA 0.00 NA K jcn_only_AA CG8596,I_chr3L_7336128_7336203,RI_chr3L_7336707_7336767,I_chr3L_7337046_7338155,I_chr3L_7340885_7340945 chr3L - chr3L_7336707_7336767 chr3L_7336711_7336767 chr3L_7336768_7336867;chr3L_7336607_7336706 95.72 96.67 100.00 100.00 98.39 100.00 95.56 96.55 90.65 95.00 100.00 99.08 100.00 94.34 96.23 96.61 91.89 93.75 96.97 94.96 96.30 94.52 97.73 96.00 97.44 95.12 89.36 NA 97.50 92.16 87.88 94.92 96.34 94.29 100.00 97.62 97.40 94.00 96.83 95.65 95.12 95.24 96.88 90.77 93.75 95.12 88.89 94.34 95.79 97.30 90.77 97.78 95.83 95.45 98.63 91.67 95.12 93.15 K intron_retention Adgf-A chr3L - chr3L_17746418_17746566 chr3L_17746417_17746418;chr3L_17746566_17746567 chr3L_17746235_17746417;chr3L_17746567_17747521 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG2118,I_chr3R_27618369_27618426,I_chr3R_27619193_27619598 chr3R - chr3R_27618369_27618426 chr3R_27618373_27618426 chr3R_27618427_27618526;chr3R_27618269_27618368 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 NA 95.00 97.73 100.00 100.00 100.00 96.30 100.00 100.00 100.00 98.33 100.00 NA 96.67 100.00 NA 100.00 96.97 NA NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 96.88 NA 100.00 96.43 100.00 95.24 96.88 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 90.00 NA NA K intron_retention Ctr1A,I_chrX_6557804_6559032,I_chrX_6558480_6559032 chrX + chrX_6555835_6559032 chrX_6555834_6555835;chrX_6559032_6559033 chrX_6555724_6555834;chrX_6559033_6559111 2.38 0.00 6.25 7.41 0.00 NA 12.12 4.76 3.90 4.65 0.00 0.00 0.00 0.00 0.00 4.76 0.00 14.29 10.53 3.45 7.14 0.00 5.26 0.00 NA NA 4.17 0.00 0.00 0.00 4.55 NA 2.38 0.00 0.00 23.08 1.15 0.00 0.00 2.86 NA 6.25 5.88 2.99 NA 9.09 0.00 0.00 6.67 4.26 5.71 0.00 0.00 0.00 8.33 0.00 1.37 4.44 K intron_retention CG4290,RI_chrX_1954878_1955077,I_chrX_1962457_1964222 chrX - chrX_1950059_1950152 chrX_1950058_1950059;chrX_1950152_1950153 chrX_1949990_1950058;chrX_1950153_1950243 0.00 NA NA 7.41 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 9.68 0.00 NA NA NA NA NA 4.17 NA NA NA NA NA NA 0.00 6.67 NA 12.50 0.00 NA 5.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 4.76 NA NA NA 0.00 0.00 K jcn_only_AA RpS3A,I_chr4_87364_87465,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87648_87717;chr4_87533_87717 chr4_87549_87717 chr4_87718_87817;chr4_87466_87532 12.90 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.90 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG13585,I_chr2R_20419710_20419962,E_chr2R_20420167_20420418 chr2R + chr2R_20419902_20419962 chr2R_20419901_20419902;chr2R_20419962_20419963 chr2R_20419877_20419901;chr2R_20419963_20420062 23.08 NA NA 36.36 25.00 NA 23.08 18.18 19.05 13.33 33.33 20.00 45.45 NA 25.00 15.38 NA 21.05 NA 30.00 35.71 6.90 54.55 20.00 60.00 NA NA NA NA NA NA NA NA 31.25 NA NA 19.05 NA 29.41 28.57 NA 24.14 NA NA 30.77 NA 11.11 NA 29.63 20.00 25.00 23.08 15.38 0.00 NA NA 12.50 16.67 K alternative_acceptor CG5746 chr3R - chr3R_20172475_20172538 chr3R_20172483_20172538 chr3R_20172539_20172607;chr3R_20172414_20172474 100.00 100.00 97.92 98.59 97.37 100.00 98.21 98.46 99.03 100.00 97.30 100.00 100.00 100.00 100.00 97.96 100.00 97.83 100.00 100.00 100.00 98.61 100.00 100.00 100.00 100.00 98.65 100.00 97.92 98.72 100.00 100.00 99.18 100.00 100.00 100.00 100.00 98.31 99.02 100.00 100.00 100.00 100.00 100.00 98.75 98.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 100.00 K intron_retention mnd chr3L + chr3L_14983168_14983245 chr3L_14983167_14983168;chr3L_14983245_14983246 chr3L_14982949_14983167;chr3L_14983246_14983841 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.71 0.00 0.00 2.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 1.89 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CkIIbeta,I_chrX_11686847_11687475,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11686979_11687475;chrX_11686948_11687475;chrX_11687313_11687475 chrX_11687025_11687475 chrX_11687476_11687551;chrX_11686929_11686947 6.25 8.70 4.17 11.63 5.56 9.09 5.56 10.87 9.52 0.00 0.00 13.33 12.50 7.69 7.69 2.04 12.50 0.00 8.33 12.77 4.76 6.25 8.70 6.67 11.11 8.33 7.14 0.00 0.00 4.76 6.45 0.00 0.00 6.67 5.88 0.00 0.00 0.00 0.00 5.26 0.00 6.12 7.14 13.64 0.00 7.69 9.52 3.70 9.09 15.38 16.67 6.25 6.25 0.00 10.26 0.00 10.00 4.76 K cassette Adar,I_chrX_1668256_1682696,I_chrX_1674594_1674717 chrX + chrX_1674859_1676968 chrX_1674859_1675750;chrX_1675917_1676968 chrX_1675751_1675916 chrX_1674718_1674858;chrX_1676969_1677068 50.00 52.63 78.95 87.50 50.00 50.00 47.37 81.82 51.28 58.82 54.55 38.46 NA 43.75 56.25 60.87 57.14 57.89 50.00 56.00 63.64 19.05 41.38 58.82 40.00 15.38 35.00 42.86 16.67 47.06 40.62 44.44 35.00 62.96 42.86 87.50 63.16 35.00 35.00 39.29 50.00 40.00 38.46 45.83 NA 50.00 58.33 37.04 53.33 30.77 54.55 35.71 50.00 50.00 43.75 50.00 87.50 53.33 K intron_retention Pegarn chr3L + chr3L_12783483_12784534 chr3L_12783482_12783483;chr3L_12784534_12784535 chr3L_12783465_12783482;chr3L_12784535_12784733 15.79 NA NA NA NA NA NA NA 15.79 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention MP1,RI_chr3R_134150_134311 chr3R + chr3R_134150_134311 chr3R_134149_134150;chr3R_134311_134312 chr3R_134050_134149;chr3R_134312_134411 60.20 63.64 70.00 52.78 NA NA 57.14 62.07 79.17 NA NA 55.00 NA 72.73 75.00 75.00 78.57 88.89 66.67 50.00 58.33 90.00 56.25 66.67 NA 33.33 53.85 NA NA NA 90.00 81.82 63.64 82.61 25.00 45.45 NA NA NA 78.95 37.50 54.17 NA NA 35.71 57.89 NA 46.15 70.83 50.00 50.00 NA NA 47.37 64.29 50.00 69.23 58.33 K alternative_acceptor rgr,I_chr2R_4488735_4489955 chr2R + chr2R_4496027_4496559 chr2R_4496027_4496554 chr2R_4495817_4496026;chr2R_4496560_4496899 95.83 94.12 100.00 100.00 100.00 100.00 100.00 92.31 95.24 100.00 100.00 93.75 87.50 100.00 100.00 100.00 88.89 90.00 100.00 95.83 100.00 96.43 94.12 95.83 96.30 93.33 92.00 95.65 94.44 95.45 93.75 100.00 94.74 100.00 96.30 100.00 96.43 95.00 97.14 96.30 90.00 95.65 100.00 95.83 88.24 96.43 96.43 94.59 92.31 95.83 96.77 95.00 93.33 96.00 100.00 95.00 92.86 100.00 K cassette CG18317,RI_chr2L_1718492_1723881,I_chr2L_1718904_1718995,RI_chr2L_1718904_1724234 chr2L - chr2L_1718492_1723881 chr2L_1718492_1718674;chr2L_1718904_1723881 chr2L_1718675_1718903 chr2L_1718421_1718491;chr2L_1723882_1723981 98.65 97.96 100.00 94.12 100.00 100.00 100.00 97.56 98.53 98.72 100.00 97.10 100.00 95.83 100.00 100.00 96.15 100.00 100.00 97.62 100.00 94.74 100.00 98.41 100.00 96.43 100.00 98.51 98.44 100.00 100.00 97.62 98.65 98.04 100.00 100.00 100.00 98.28 98.86 98.41 100.00 98.46 90.48 100.00 98.36 98.28 98.28 100.00 98.25 97.78 100.00 100.00 97.62 97.73 97.14 100.00 100.00 98.48 K intron_retention kst,I_chr3L_3365752_3365816,I_chr3L_3367008_3367514 chr3L + chr3L_3366311_3367514 chr3L_3366310_3366311;chr3L_3367514_3367515 chr3L_3366200_3366310;chr3L_3367515_3367614 9.63 11.24 14.92 42.86 12.32 13.48 7.41 12.44 11.89 3.41 3.50 10.40 7.45 12.62 10.94 47.17 9.24 6.90 9.52 8.10 6.10 8.64 11.73 10.50 15.04 5.00 15.29 10.53 6.06 19.48 12.50 5.30 6.13 9.55 12.50 12.10 12.87 12.36 10.00 9.62 7.32 9.66 7.69 7.94 2.30 9.35 8.72 6.91 8.37 9.63 12.06 14.06 8.45 10.98 6.89 9.69 7.95 7.72 K multi_cassette CG11266,RI_chr2L_7033019_7033182,RI_chr2L_7033019_7034180,RI_chr2L_7033019_7034764,I_chr2L_7034274_7034764,I_chr2L_7034274_7035406,I_chr2L_7051093_7051366 chr2L + chr2L_7033019_7034764 chr2L_7033019_7034198;chr2L_7034274_7034483;chr2L_7034694_7034764 chr2L_7034199_7034273;chr2L_7034484_7034693 chr2L_7032919_7033018;chr2L_7034765_7034823 92.31 NA NA NA NA NA NA 90.00 90.91 100.00 100.00 90.00 100.00 100.00 75.00 85.71 100.00 NA 100.00 100.00 NA NA 80.00 100.00 NA NA NA NA 71.43 88.89 92.31 100.00 81.82 100.00 NA NA 75.00 NA 100.00 90.91 83.33 77.78 100.00 87.50 100.00 90.00 NA 95.00 84.62 100.00 75.00 100.00 NA NA 83.33 100.00 NA 94.12 K intron_retention S6k,I_chr3L_5800361_5803389,RI_chr3L_5801924_5803389 chr3L - chr3L_5800361_5800640 chr3L_5800360_5800361;chr3L_5800640_5800641 chr3L_5800311_5800360;chr3L_5800641_5800709 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 97.50 NA 100.00 100.00 100.00 100.00 NA 100.00 96.30 100.00 100.00 97.73 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 NA 100.00 100.00 93.75 96.88 100.00 96.77 92.86 100.00 100.00 100.00 100.00 100.00 100.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389272_2395659 chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2393243;chrX_2393712_2394269;chrX_2394396_2395151;chrX_2395275_2395659 chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2393244_2393711;chrX_2394270_2394395;chrX_2395152_2395274 chrX_2389172_2389271;chrX_2395660_2395759 33.33 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette Ac3,I_chr2L_21643253_21646594 chr2L + chr2L_21643253_21646594 chr2L_21643253_21643763;chr2L_21644220_21646594 chr2L_21643764_21644219 chr2L_21643170_21643252;chr2L_21646595_21646694 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 93.33 100.00 100.00 93.75 100.00 100.00 94.74 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention caz,RI_chrX_16183356_16185973 chrX + chrX_16186144_16186227 chrX_16186143_16186144;chrX_16186227_16186228 chrX_16185974_16186143;chrX_16186228_16186676 0.94 1.53 1.54 0.81 0.99 1.30 2.74 1.57 2.12 0.00 0.00 1.32 0.58 1.17 1.06 1.79 0.54 0.64 1.74 0.94 0.44 0.19 1.40 0.49 0.85 1.03 1.99 1.92 0.26 0.32 0.31 0.52 0.64 1.55 0.52 1.08 0.49 0.59 0.62 0.83 0.80 1.52 1.99 0.83 0.66 1.00 1.06 0.21 1.58 0.54 1.13 0.00 0.95 1.15 0.95 0.99 0.76 0.55 N alternative_acceptor Tsp42Ed chr2R - chr2R_2897806_2897936 chr2R_2897868_2897936 chr2R_2897937_2898098;chr2R_2897608_2897805 1.95 1.90 2.78 3.97 0.70 2.78 2.40 1.83 2.32 2.45 2.68 1.85 2.15 2.00 2.34 1.59 1.80 2.42 3.40 1.74 1.40 1.96 1.97 2.28 1.36 4.26 2.34 1.17 0.94 2.60 3.01 2.05 0.82 2.83 2.56 2.51 1.43 0.72 2.49 2.48 1.87 1.95 1.82 1.74 1.93 1.62 1.33 1.71 2.78 1.90 2.92 1.33 0.90 3.77 1.83 1.54 1.52 1.45 K jcn_only_AA Gpo-1,I_chr2R_11747621_11747699,EI_chr2R_11747445_11747699,I_chr2R_11749758_11750187,I_chr2R_11756325_11756380 chr2R - chr2R_11747621_11747699 chr2R_11747625_11747699 chr2R_11747700_11747768;chr2R_11747521_11747620 98.22 97.25 98.61 97.14 100.00 100.00 96.97 100.00 99.14 97.37 100.00 98.44 100.00 95.24 100.00 98.08 100.00 100.00 100.00 100.00 100.00 96.93 97.06 97.89 96.73 98.08 99.20 98.31 97.62 96.58 96.47 94.74 98.86 98.53 99.11 97.67 96.41 98.17 98.21 94.08 99.28 98.15 100.00 94.63 98.62 96.39 98.22 97.16 100.00 97.53 98.25 97.83 98.63 98.40 100.00 96.39 98.95 95.52 K intron_retention simj,I_chr3L_10680263_10680313 chr3L + chr3L_10678995_10679063 chr3L_10678994_10678995;chr3L_10679063_10679064 chr3L_10678110_10678994;chr3L_10679064_10679346 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.34 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pnn chr3R + chr3R_5567691_5567921 chr3R_5567690_5567691;chr3R_5567921_5567922 chr3R_5566921_5567690;chr3R_5567922_5568054 80.00 88.89 78.57 87.88 NA 88.89 91.30 71.88 80.77 NA 72.73 89.29 71.43 76.47 75.00 85.71 90.00 87.50 81.25 75.00 NA NA 87.50 90.00 NA 84.62 80.00 NA 75.00 50.00 80.00 69.23 63.64 80.00 72.73 NA NA NA NA 82.61 88.46 80.00 56.25 NA 87.50 87.50 66.67 88.89 78.79 NA NA NA NA NA 92.86 77.78 90.00 75.86 K intron_retention CG8232 chr2R + chr2R_4816384_4816440 chr2R_4816383_4816384;chr2R_4816440_4816441 chr2R_4816214_4816383;chr2R_4816441_4817702 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 1.75 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG5284,I_chr3L_16086347_16086804 chr3L + chr3L_16083622_16084615 chr3L_16084019_16084615 chr3L_16084616_16084958;chr3L_16083606_16083621 96.43 96.04 89.92 91.85 96.51 93.98 97.30 95.50 91.46 93.97 94.12 94.89 89.29 93.40 99.14 97.75 97.22 95.29 93.62 94.17 97.92 96.24 99.00 94.93 96.88 97.78 96.69 92.66 99.49 96.99 97.96 95.24 95.12 91.67 95.60 99.20 91.02 97.60 95.95 96.17 98.53 92.89 91.03 99.25 94.25 97.12 98.89 98.15 98.31 96.70 96.99 98.04 96.72 95.12 98.15 98.73 97.37 96.43 K intron_retention Dredd,RI_chrX_529342_529426 chrX - chrX_528521_528596 chrX_528520_528521;chrX_528596_528597 chrX_528452_528520;chrX_528597_528617 100.00 NA NA 100.00 NA NA 88.89 100.00 91.67 NA NA 100.00 NA NA NA 100.00 NA 100.00 NA 92.31 NA NA NA NA NA NA NA NA 100.00 90.00 93.75 100.00 100.00 100.00 NA NA NA NA NA 94.12 91.67 100.00 NA 92.31 NA 93.75 NA 94.74 93.75 NA 100.00 NA NA NA 88.89 100.00 100.00 100.00 K intron_retention CG9577,CG9578 chrX + chrX_20061849_20061914 chrX_20061848_20061849;chrX_20061914_20061915 chrX_20061224_20061848;chrX_20061915_20062160 1.15 2.53 0.00 10.81 0.00 0.00 2.63 0.00 0.00 3.23 0.00 1.74 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.63 0.00 3.57 4.88 3.49 2.70 16.95 5.63 6.90 17.78 0.00 2.35 6.90 0.00 1.00 0.00 3.70 1.52 0.00 3.19 4.94 5.71 0.00 0.00 0.00 0.00 1.79 0.00 0.00 4.60 1.12 1.15 0.00 0.00 1.80 2.53 2.15 2.08 5.66 K alternative_acceptor CG11334,I_chr3R_27287685_27288551,I_chr3R_27287691_27288117,F_chr3R_27287720_27288551,RI_chr3R_27288047_27288117 chr3R - chr3R_27287685_27288551 chr3R_27287691_27288551 chr3R_27288552_27288651;chr3R_27287620_27287684 97.77 100.00 95.24 96.55 94.74 93.94 95.45 95.65 97.87 91.67 100.00 97.62 100.00 96.00 100.00 92.86 93.75 92.31 100.00 98.39 100.00 NA 97.14 97.06 100.00 97.06 100.00 100.00 100.00 92.86 100.00 100.00 100.00 97.56 95.65 96.00 93.33 96.43 97.67 100.00 100.00 98.15 95.45 100.00 96.43 96.30 100.00 95.65 98.08 100.00 100.00 100.00 100.00 97.06 96.77 100.00 98.11 100.00 K cassette Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24348983_24349755;chr3R_24349420_24349755 chr3R_24348983_24349501,chr3R_24349420_24349501;chr3R_24349697_24349755 chr3R_24349502_24349696 chr3R_24348417_24348982;chr3R_24349756_24349939 40.62 45.00 27.03 28.95 39.39 40.62 19.23 26.76 38.46 38.46 33.33 27.85 22.22 30.30 30.23 50.00 27.59 40.00 35.71 41.59 34.38 35.29 50.98 53.49 32.43 20.00 53.85 36.36 27.59 43.75 39.13 46.67 54.55 36.96 44.44 42.86 46.77 57.14 60.78 43.33 35.71 31.71 24.24 44.00 45.45 55.56 55.00 45.45 35.53 44.44 55.81 66.67 56.52 50.00 35.14 57.58 60.47 42.11 N cassette spin,I_chr2R_12013288_12013847 chr2R + chr2R_12019405_12023531 chr2R_12019405_12019813;chr2R_12020141_12023531 chr2R_12019814_12020140 chr2R_12019047_12019404;chr2R_12023532_12023630 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.05 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette CG15715,RI_chr3L_15829349_15830356,I_chr3L_15830026_15830356,RI_chr3L_15830030_15830191,RI_chr3L_15830229_15830356 chr3L - chr3L_15829349_15830356 chr3L_15829349_15829879;chr3L_15830026_15830356 chr3L_15829880_15830025 chr3L_15829249_15829348;chr3L_15830357_15830456 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD bif,I_chrX_11581793_11583233 chrX + chrX_11573223_11574876 chrX_11573323_11574876 chrX_11574877_11575147;chrX_11573031_11573222 95.24 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.24 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Alr chrX + chrX_19643663_19643721 chrX_19643662_19643663;chrX_19643721_19643722 chrX_19643421_19643662;chrX_19643722_19644199 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 5.88 0.00 12.50 0.00 5.26 0.00 0.00 0.00 0.00 0.00 7.50 0.00 3.45 0.00 0.00 4.00 9.59 4.11 3.70 0.00 8.33 6.56 2.63 0.00 0.00 0.00 0.00 3.90 7.29 1.69 7.14 0.00 0.00 7.81 0.00 6.52 1.25 5.26 2.53 1.41 9.38 0.00 2.86 0.00 6.85 0.00 4.08 K intron_retention ps,I_chr3R_5243723_5265067,I_chr3R_5243723_5270765,noncoding_15575,I_chr3R_5245770_5265067,I_chr3R_5245770_5269732,I_chr3R_5258562_5264836,I_chr3R_5262841_5265067,RI_chr3R_5262841_5266402,I_chr3R_5265428_5266402,I_chr3R_5265428_5269732,I_chr3R_5265428_5270765,CG16777,I_chr3R_5269733_5270765 chr3R + chr3R_5243723_5257750 chr3R_5243722_5243723;chr3R_5257750_5257751 chr3R_5243705_5243722;chr3R_5257751_5258205 23.08 NA NA 30.43 NA NA 31.25 21.43 18.75 NA NA 22.22 11.11 23.08 NA 28.57 NA NA 30.77 12.82 NA 42.86 NA NA NA NA NA NA NA NA NA NA 23.53 16.67 NA NA NA NA NA NA NA 25.00 30.77 NA NA NA NA NA 9.52 NA NA NA NA NA 15.38 NA NA NA K intron_retention Trf2,I_chrX_8318346_8318408 chrX + chrX_8317703_8317760 chrX_8317702_8317703;chrX_8317760_8317761 chrX_8317687_8317702;chrX_8317761_8318068 50.00 46.15 NA 69.23 30.77 NA 40.74 33.33 50.00 NA NA 36.36 46.15 40.00 58.33 61.11 NA 47.06 41.67 48.00 NA 35.29 50.00 NA NA 50.00 61.11 NA NA NA 53.85 NA NA 52.00 NA NA NA NA NA NA NA 56.52 50.00 57.69 NA NA NA 60.00 50.00 NA 40.00 NA NA NA 50.00 NA NA NA K alternative_acceptor Uch,CG10880 chr2L - chr2L_2213757_2213895 chr2L_2213781_2213895 chr2L_2213896_2213958;chr2L_2213616_2213756 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Hcs,I_chr3R_1303481_1304607 chr3R + chr3R_1303481_1304607 chr3R_1303480_1303481;chr3R_1304607_1304608 chr3R_1303381_1303480;chr3R_1304608_1304625 36.03 NA NA 28.57 NA NA 28.57 NA 42.86 NA NA 33.33 NA NA NA 50.00 NA 7.14 NA 47.06 NA 72.73 37.50 35.71 NA NA 46.67 NA NA 41.67 NA NA NA 46.15 NA NA 22.22 13.33 22.22 30.00 NA 46.15 NA NA NA NA NA NA 22.22 36.36 40.00 35.71 NA NA NA NA NA NA K intron_retention CG5554,gbb chr2R + chr2R_19733220_19733288 chr2R_19733219_19733220;chr2R_19733288_19733289 chr2R_19733058_19733219;chr2R_19733289_19733463 0.27 0.28 0.00 1.12 0.00 0.00 0.00 0.78 0.00 0.55 0.00 0.00 0.00 0.00 0.72 0.54 0.00 0.00 0.54 0.50 0.00 0.00 0.51 0.00 1.15 1.42 1.03 1.44 2.19 0.34 0.37 0.71 0.00 0.00 0.00 1.38 0.00 0.00 0.34 0.00 1.30 0.64 0.00 0.00 0.87 1.55 0.00 0.87 0.52 0.56 0.27 0.00 0.00 0.00 1.62 0.47 0.00 0.00 N cassette Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16107821_16110644;chr3L_16108931_16110644 chr3L_16108931_16109131,chr3L_16107821_16109131;chr3L_16109720_16110644 chr3L_16109132_16109719 chr3L_16107721_16107820;chr3L_16110645_16111208 94.05 91.94 96.97 93.10 86.67 83.33 85.51 92.65 95.42 97.78 86.27 93.97 92.86 93.88 98.28 97.06 88.37 96.30 97.92 90.07 91.30 92.34 94.50 89.74 91.67 94.44 93.33 96.47 99.10 95.33 95.56 97.06 96.30 94.05 94.92 88.30 90.38 92.13 94.35 96.71 89.39 93.33 90.91 93.46 95.10 94.74 97.92 96.61 92.86 92.45 96.34 95.74 98.28 97.62 95.08 87.93 95.24 92.68 K intron_retention Unc-76,RI_chrX_1983640_1985001,I_chrX_2002576_2003165 chrX + chrX_1985767_1985834 chrX_1985766_1985767;chrX_1985834_1985835 chrX_1985551_1985766;chrX_1985835_1985924 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 4.65 7.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor RI_chr2R_3817895_3817951,rnh1,RI_chr2R_3819348_3819403 chr2R - chr2R_3819348_3819403 chr2R_3819352_3819403 chr2R_3819404_3819460;chr2R_3819248_3819347 97.30 96.88 100.00 97.62 95.45 100.00 96.55 97.44 97.96 96.77 100.00 100.00 100.00 95.45 100.00 100.00 95.00 96.55 97.30 92.73 100.00 97.14 94.12 95.00 100.00 96.88 97.06 90.00 97.73 97.14 93.55 97.73 98.15 97.30 96.88 92.00 92.31 96.97 97.67 98.53 98.08 95.83 96.00 96.97 96.97 98.57 97.37 97.73 100.00 97.30 93.75 100.00 97.50 96.77 96.88 97.50 97.87 99.13 K intron_retention Hydr1 chr2R + chr2R_5020273_5021103 chr2R_5020272_5020273;chr2R_5021103_5021104 chr2R_5020204_5020272;chr2R_5021104_5021275 21.82 19.05 11.11 33.33 15.79 12.50 22.22 21.43 14.58 NA 50.00 48.15 11.11 25.00 30.00 19.23 16.67 31.25 20.00 17.02 26.67 NA 12.50 12.00 NA 26.67 22.22 NA 30.77 14.29 11.76 NA 25.00 13.79 14.29 35.71 11.11 30.77 22.22 26.32 NA 15.62 26.67 12.50 33.33 16.67 NA NA 22.22 NA 26.32 26.32 NA 15.38 29.17 NA NA NA K intron_retention E(var)3-9 chr3R - chr3R_4818350_4818398 chr3R_4818349_4818350;chr3R_4818398_4818399 chr3R_4817512_4818349;chr3R_4818399_4818650 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 2.27 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.94 8.47 3.85 0.00 0.00 7.69 8.70 0.00 0.00 0.00 0.00 0.00 4.88 0.00 0.00 0.00 2.63 0.00 4.26 7.14 5.56 5.88 0.00 3.85 3.45 6.67 0.00 2.50 3.70 10.64 10.53 0.00 3.85 0.00 8.33 0.00 0.00 K intron_retention EF_chr2R_8548702_8595112,CG8768 chr2R - chr2R_8579528_8579585 chr2R_8579527_8579528;chr2R_8579585_8579586 chr2R_8579297_8579527;chr2R_8579586_8580028 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 4.55 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention noncoding_21631,CG9904 chrX + chrX_2512193_2512439 chrX_2512192_2512193;chrX_2512439_2512440 chrX_2512029_2512192;chrX_2512440_2512543 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.99 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD RpS15Aa chrX - chrX_13231573_13231643;chrX_13231573_13231635 chrX_13231573_13231639 chrX_13231538_13231572;chrX_13231644_13231706 65.84 NA 65.00 45.83 NA 50.00 77.78 70.00 70.37 NA 44.00 70.73 NA 70.00 56.25 58.33 NA 75.00 71.43 74.07 NA NA NA NA NA 70.00 NA NA NA NA 52.94 NA NA 54.35 NA NA NA NA NA NA NA 52.38 54.55 NA NA NA NA NA 71.88 NA NA 80.95 NA NA 64.71 NA 66.67 62.50 N intron_retention noncoding_7217 chr2R + chr2R_12100101_12100210 chr2R_12100100_12100101;chr2R_12100210_12100211 chr2R_12099944_12100100;chr2R_12100211_12104108 70.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 74.36 NA 46.15 72.00 100.00 100.00 60.87 100.00 100.00 47.37 61.90 100.00 40.00 NA 45.45 NA NA 68.42 NA NA NA NA 47.62 NA NA 68.97 100.00 NA NA 40.00 43.75 50.00 NA 64.86 100.00 35.29 NA NA NA 100.00 69.70 NA 39.13 NA NA NA 57.14 NA NA NA K jcn_only_AA CG10353,I_chrX_11775936_11778830,RI_chrX_11780885_11780988 chrX - chrX_11779138_11780988;chrX_11780885_11780988 chrX_11779315_11780988 chrX_11780989_11781085;chrX_11778831_11779137 2.27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor cul-2,I_chr2L_21659273_21659499,I_chr2L_21659273_21659705,I_chr2L_21659761_21659839,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21659273_21659839 chr2L_21659273_21659705 chr2L_21659173_21659272;chr2L_21659840_21659939 1.61 0.00 1.41 4.13 0.00 1.45 3.17 6.06 2.58 1.52 0.00 1.32 4.84 1.82 3.19 4.76 1.75 1.67 2.78 1.34 1.52 1.38 1.69 1.61 2.80 1.19 3.48 6.08 2.60 2.17 3.80 2.78 2.22 3.54 1.39 0.95 0.83 1.60 1.61 3.60 1.43 2.13 0.00 1.60 0.00 1.64 0.00 0.00 1.54 0.00 2.88 3.41 0.00 0.00 2.47 0.00 1.19 0.00 K alternative_acceptor CG32313,REI_chr3L_1545423_1545473,I_chr3L_1545606_1545652 chr3L - chr3L_1545100_1545169 chr3L_1545104_1545169 chr3L_1545170_1545405;chr3L_1544988_1545099 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG8908,I_chr2R_16158045_16158109 chr2R + chr2R_16157528_16158109 chr2R_16158045_16158109 chr2R_16158110_16158209;chr2R_16156652_16157527 11.52 NA 10.00 NA NA NA 7.41 NA 38.46 NA NA 28.00 3.57 30.00 30.43 3.85 NA 7.41 NA 19.35 NA 6.90 5.00 NA NA NA NA NA NA NA 10.53 NA 4.76 30.00 NA NA NA NA 12.50 14.29 NA 14.29 NA NA 6.25 21.62 NA 0.00 21.88 4.00 NA NA NA NA 30.43 NA NA NA N intron_retention CG17018,R_chr2L_22312023_22363414 chr2L + chr2L_22363262_22363429 chr2L_22363261_22363262;chr2L_22363429_22363430 chr2L_22363200_22363261;chr2L_22363430_22363514 20.00 NA NA NA NA NA 53.33 26.32 41.18 NA NA NA NA NA NA 26.09 NA 0.00 18.75 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 31.58 NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA 19.05 NA NA NA NA NA 20.00 NA NA NA K intron_retention I_chr2L_11009331_11009442,dUTPase,I_chr2L_11011380_11011453 chr2L + chr2L_11011419_11011471 chr2L_11011418_11011419;chr2L_11011471_11011472 chr2L_11011335_11011418;chr2L_11011472_11011553 99.15 99.37 99.28 99.08 96.95 99.12 99.36 98.22 97.96 99.11 100.00 99.18 99.15 99.17 98.04 99.49 99.07 99.12 100.00 98.67 96.75 99.02 99.49 100.00 100.00 100.00 99.07 99.14 100.00 98.80 99.07 98.75 100.00 99.42 98.95 100.00 99.54 99.38 99.52 97.92 100.00 98.14 99.15 100.00 98.85 99.31 99.39 98.25 99.63 98.62 99.47 99.16 96.43 98.03 97.39 99.42 98.45 100.00 K intron_retention CG32442,Mkrn1 chr3L - chr3L_21522186_21522245 chr3L_21522185_21522186;chr3L_21522245_21522246 chr3L_21522066_21522185;chr3L_21522246_21522378 0.00 NA NA 0.00 NA NA 12.50 0.00 0.00 NA NA 0.00 NA NA NA 14.29 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA 0.00 K alternative_donor CG7510,I_chr3L_17622707_17622884 chr3L + chr3L_17621448_17621526 chr3L_17621472_17621526 chr3L_17621527_17621595;chr3L_17621379_17621447 45.16 40.43 41.67 30.51 52.38 54.84 43.75 46.46 48.25 45.45 45.00 45.74 54.72 49.12 47.62 48.72 48.89 44.62 48.28 40.31 43.10 53.45 40.00 52.38 39.39 40.74 41.86 48.15 25.71 29.63 42.37 32.00 29.63 41.24 60.00 32.35 40.82 45.16 48.84 41.27 36.96 45.26 48.72 56.60 28.57 48.72 54.55 20.00 43.02 43.75 51.11 54.84 52.63 44.44 42.03 50.00 54.55 45.16 K cassette Nedd4,I_chr3L_17534504_17535990,I_chr3L_17535485_17536604,I_chr3L_17536813_17536863 chr3L + chr3L_17535485_17536604 chr3L_17535485_17535689;chr3L_17535913_17536604 chr3L_17535690_17535912 chr3L_17535417_17535484;chr3L_17536605_17536704 74.37 80.00 NA NA NA NA 80.00 NA 85.71 66.67 80.00 91.67 NA NA NA NA NA NA NA 100.00 NA 52.00 63.64 80.00 80.00 NA 57.14 NA 63.64 72.73 NA 57.14 81.25 NA 66.67 NA 91.67 87.50 88.89 61.90 62.50 71.43 NA 53.33 71.43 70.00 NA 76.00 NA 57.14 60.00 NA 80.00 NA NA 100.00 NA 80.00 K alternative_acceptor CG6750,I_chr2L_10732122_10732185 chr2L - chr2L_10732122_10732185 chr2L_10732126_10732185 chr2L_10732186_10732285;chr2L_10732022_10732121 98.95 97.87 98.67 99.04 98.04 100.00 100.00 98.81 99.16 91.67 98.18 100.00 97.62 100.00 100.00 100.00 100.00 98.41 98.31 99.43 98.21 98.08 99.18 99.07 98.28 100.00 99.08 97.47 100.00 100.00 94.12 98.78 98.95 98.77 98.28 98.78 98.98 98.91 100.00 99.22 100.00 97.54 98.11 98.78 98.97 99.29 99.10 98.78 100.00 98.95 97.94 100.00 97.24 97.98 100.00 99.09 98.60 98.41 K intron_retention prel chr2R + chr2R_5311772_5311836 chr2R_5311771_5311772;chr2R_5311836_5311837 chr2R_5311616_5311771;chr2R_5311837_5311930 22.22 23.53 19.64 32.86 28.12 24.56 30.99 24.39 24.24 21.21 32.43 21.05 28.95 19.23 27.54 18.57 33.33 19.61 23.21 24.56 26.53 8.33 21.43 18.75 52.38 41.82 45.16 35.71 29.51 16.95 18.64 13.43 13.08 22.50 29.55 59.42 25.00 20.83 22.41 14.85 43.06 20.65 26.19 18.64 8.70 22.45 15.52 16.04 20.43 22.22 21.43 33.33 19.51 19.61 12.70 20.75 16.67 15.13 K jcn_only_AD CG3632,RI_chrX_16195880_16196242 chrX + chrX_16190917_16191693;chrX_16190941_16191693 chrX_16190824_16191693 chrX_16191694_16191751;chrX_16190763_16190823 45.83 NA NA 53.33 NA 39.13 37.93 60.61 52.50 NA NA 47.73 NA NA 64.00 63.89 NA NA 43.48 41.03 NA NA 51.72 31.82 NA 36.36 NA NA NA NA 45.83 NA NA 41.03 28.57 NA 60.87 NA NA 20.00 NA 46.94 NA NA NA NA NA NA 52.63 NA 32.00 42.86 NA NA 52.17 NA NA NA K intron_retention CG32138 chr3L + chr3L_14061847_14061907 chr3L_14061846_14061847;chr3L_14061907_14061908 chr3L_14061292_14061846;chr3L_14061908_14062027 0.00 0.00 0.66 0.00 0.00 0.00 1.55 0.64 0.93 0.00 0.57 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 1.08 0.00 0.00 0.31 0.00 0.00 0.00 0.00 4.39 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.44 0.68 0.00 K jcn_only_AA vap,RI_chrX_15897976_15899352,I_chrX_15897976_15899654,I_chrX_15898011_15899654,I_chrX_15898427_15899017,RI_chrX_15898427_15899654,RI_chrX_15899237_15899352,I_chrX_15899237_15899654 chrX - chrX_15897976_15899654;chrX_15898427_15899654;chrX_15899510_15899654;chrX_15898478_15899654 chrX_15898011_15899654 chrX_15899655_15899705 5.21 NA NA NA NA NA 5.88 NA 0.00 NA NA 6.06 NA NA NA 5.88 NA NA NA 2.13 NA 0.00 0.00 NA 9.09 NA NA NA NA 5.00 10.34 NA NA 7.14 NA NA 5.00 NA 4.55 6.45 NA 5.41 NA 4.35 NA NA NA NA 14.29 NA NA 3.85 NA NA NA NA NA NA K intron_retention CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3018082_3018163 chr2L_3018081_3018082;chr2L_3018163_3018164 chr2L_3018075_3018081;chr2L_3018164_3018185 3.03 NA NA 10.00 NA NA 4.00 3.12 2.70 NA NA 16.67 NA 12.50 NA 2.78 14.29 NA 6.67 6.25 NA 0.00 NA NA NA NA NA NA NA NA 2.94 6.25 NA 0.00 NA NA NA NA NA 0.00 0.00 10.00 NA 0.00 0.00 0.00 NA 0.00 6.25 14.29 NA NA NA NA NA NA NA 0.00 K intron_retention CG42640,l(2)k09913 chr2R + chr2R_18953339_18953402 chr2R_18953338_18953339;chr2R_18953402_18953403 chr2R_18952146_18953338;chr2R_18953403_18953498 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,I_chr2R_15350149_15350210,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350285_15351846;chr2R_15350149_15351846;chr2R_15350437_15351846 chr2R_15350157_15351846 chr2R_15351847_15351914;chr2R_15350068_15350148 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_last_exon olf186-F,CG30323 chr2R + chr2R_13738966_13746762;chr2R_13738966_13745146 chr2R_13738966_13742644 chr2R_13746763_13748712;chr2R_13745147_13745302 chr2R_13742645_13743293 chr2R_13738563_13738965 12.73 9.86 17.14 21.31 6.38 22.22 20.45 20.90 15.32 9.09 20.00 19.75 21.43 30.00 16.67 30.43 14.29 20.93 25.00 22.64 23.08 5.05 12.73 9.68 11.76 17.02 11.94 10.26 8.33 9.09 19.51 7.69 9.38 19.40 13.21 13.89 6.30 7.79 9.28 7.59 10.34 17.00 18.42 8.96 5.80 9.38 8.33 11.32 18.81 8.11 17.07 17.95 12.73 6.25 18.37 8.96 8.62 8.70 K intron_retention Pop2,RI_chr3L_11992097_11993849 chr3L - chr3L_11993791_11993849 chr3L_11993790_11993791;chr3L_11993849_11993850 chr3L_11993373_11993790;chr3L_11993850_11993949 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.58 2.63 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Rab30,I_chr2L_7032178_7032236 chr2L - chr2L_7032178_7032244;chr2L_7032178_7032236;chr2L_7032178_7032310 chr2L_7032178_7032321 chr2L_7032078_7032177;chr2L_7032322_7032336 34.62 26.67 31.43 38.89 NA 11.43 40.48 45.00 34.62 40.00 50.00 39.22 47.62 NA 25.93 19.44 20.00 39.13 15.15 28.30 22.22 17.24 33.33 31.03 27.27 42.86 41.38 57.14 38.64 38.24 21.74 30.77 24.39 44.74 NA 39.29 38.24 20.00 40.00 32.20 35.90 28.85 29.17 37.14 34.09 44.90 54.55 31.25 33.33 33.33 35.29 NA NA 47.62 35.48 52.38 NA 33.33 K alternative_donor dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21308996_21310000;chr2L_21308996_21309994 chr2L_21308996_21309579 chr2L_21308992_21308995;chr2L_21310001_21310009 83.33 65.22 76.19 74.19 87.50 76.47 79.31 80.77 72.88 NA 90.00 65.22 80.00 73.68 76.92 76.67 80.00 88.46 73.91 80.65 89.47 86.96 96.00 90.00 83.33 82.35 96.15 NA NA 95.00 79.17 90.00 85.42 63.64 92.86 96.77 85.29 90.48 96.43 NA 92.31 70.21 64.71 92.00 83.33 100.00 81.82 92.31 75.00 NA 88.89 78.95 87.50 100.00 80.00 85.71 86.67 83.33 K jcn_only_AD RI_chr4_1144958_1145393,CG11155,I_chr4_1152220_1152710,I_chr4_1152585_1152687 chr4 + chr4_1147564_1147627 chr4_1147568_1147627 chr4_1147628_1147833;chr4_1147545_1147563 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 96.00 NA 96.43 NA 100.00 NA NA NA 95.24 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 95.45 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K alternative_donor CG6695 chr3R + chr3R_20483336_20484042;chr3R_20483332_20484042 chr3R_20483291_20484042 chr3R_20484043_20484133;chr3R_20483238_20483290 5.26 4.17 5.88 3.70 6.25 0.00 5.00 0.00 7.32 0.00 0.00 3.45 7.69 0.00 0.00 6.67 7.69 5.56 0.00 2.56 0.00 7.69 8.57 12.50 14.29 7.69 0.00 9.52 0.00 5.26 22.22 16.67 14.63 8.00 5.00 4.76 9.76 9.09 11.43 2.78 3.03 7.32 0.00 15.15 3.12 8.82 9.52 0.00 0.00 5.71 3.85 4.76 10.34 13.33 5.26 12.50 3.23 3.33 K intron_retention lolal,I_chr2R_14043671_14043736,I_chr2R_14043671_14043740,I_chr2R_14043671_14043901,RI_chr2R_14043671_14044082,I_chr2R_14043671_14044191,I_chr2R_14043671_14044461,I_chr2R_14043671_14045289,I_chr2R_14043671_14045344 chr2R - chr2R_14043671_14044191 chr2R_14043670_14043671;chr2R_14044191_14044192 chr2R_14043571_14043670;chr2R_14044192_14044203 100.00 NA NA 100.00 NA 100.00 NA 90.91 100.00 NA NA 100.00 NA 90.91 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA NA 100.00 100.00 NA NA 100.00 93.75 NA 100.00 NA NA NA 92.31 NA 94.44 NA NA NA 90.00 NA 100.00 93.33 87.50 100.00 NA NA NA 90.91 100.00 NA NA K intron_retention MCPH1,RI_chr2R_7790917_7791377 chr2R - chr2R_7785983_7786051 chr2R_7785982_7785983;chr2R_7786051_7786052 chr2R_7784614_7785982;chr2R_7786052_7786143 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 3.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.53 0.00 K jcn_only_AD fs(1)h,I_chrX_7950171_7952371,I_chrX_7954192_7955240 chrX - chrX_7944590_7945403 chrX_7944590_7945391 chrX_7944470_7944589;chrX_7945404_7945562 35.24 35.24 35.64 31.06 41.24 32.00 31.58 39.31 30.74 43.40 35.71 38.42 24.04 39.64 39.25 34.68 42.68 39.81 35.35 35.58 32.56 10.00 43.24 37.14 26.87 32.74 37.21 38.57 41.27 25.71 30.00 39.47 32.20 37.41 38.00 31.31 30.22 32.43 35.54 39.72 32.00 37.99 33.65 32.67 23.08 37.18 31.17 25.00 42.49 31.34 40.31 50.00 32.31 31.91 35.04 25.81 20.93 37.04 K alternative_donor CalpA chr2R + chr2R_15312652_15313538 chr2R_15312744_15313538 chr2R_15313539_15313723;chr2R_15312580_15312651 94.00 96.43 83.33 80.00 87.88 83.78 87.30 86.67 89.29 100.00 83.33 87.50 79.41 87.50 83.02 88.46 83.33 89.19 81.08 81.25 83.72 94.44 100.00 100.00 96.97 84.09 100.00 100.00 98.41 94.00 83.61 96.67 92.47 85.25 100.00 100.00 95.45 96.00 97.44 100.00 96.97 87.50 86.21 94.44 94.44 98.08 100.00 92.31 90.00 100.00 97.56 100.00 96.15 100.00 87.50 96.00 96.77 92.31 K multi_cassette DCAP,E_chr2R_6159586_6174578,I_chr2R_6164310_6172914,I_chr2R_6172307_6179999,I_chr2R_6178643_6181126,RI_chr2R_6183553_6192101,I_chr2R_6188094_6192101 chr2R + chr2R_6172307_6182116 chr2R_6172307_6181126;chr2R_6181267_6181365;chr2R_6181439_6182116 chr2R_6181127_6181266;chr2R_6181366_6181438 chr2R_6172207_6172306;chr2R_6182117_6182270 83.33 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA 57.14 NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA K intron_retention CG14778,pck,CG14780 chrX + chrX_1365097_1365172 chrX_1365096_1365097;chrX_1365172_1365173 chrX_1364901_1365096;chrX_1365173_1365381 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 NA 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 6.45 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CaMKII,I_chr4_1059085_1060638,I_chr4_1059085_1065781,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1059064_1060638;chr4_1059061_1060638 chr4_1059085_1060638 chr4_1060639_1060704;chr4_1059054_1059060 0.00 NA NA 0.00 NA NA 0.00 0.00 4.35 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K alternative_donor vig chr2L - chr2L_15067690_15067915;chr2L_15067690_15067952;chr2L_15067690_15067995;chr2L_15067690_15067868;chr2L_15067690_15068029 chr2L_15067690_15067999 chr2L_15066937_15067689;chr2L_15068030_15068031 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention noncoding_8304 chr2R - chr2R_17031266_17031413 chr2R_17031265_17031266;chr2R_17031413_17031414 chr2R_17031068_17031265;chr2R_17031414_17031612 100.00 99.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.84 100.00 100.00 99.88 99.88 99.91 100.00 100.00 100.00 100.00 100.00 100.00 99.93 100.00 100.00 100.00 100.00 99.91 99.92 99.94 99.89 99.93 99.91 100.00 100.00 100.00 100.00 99.89 99.86 99.90 100.00 99.93 99.94 99.86 100.00 99.68 99.84 100.00 99.95 99.94 100.00 100.00 100.00 99.82 100.00 99.91 99.87 99.90 99.82 K intron_retention Nrx-IV,eap chr3L + chr3L_12142009_12144310 chr3L_12142008_12142009;chr3L_12144310_12144311 chr3L_12141892_12142008;chr3L_12144311_12144507 20.34 NA NA 75.00 NA 18.75 NA 26.67 20.69 50.00 NA 16.67 NA 16.67 33.33 35.71 NA NA NA 11.54 NA 22.73 22.58 11.76 NA NA 14.29 NA NA 30.00 3.70 NA 21.43 25.00 NA 11.11 10.34 NA NA 18.52 NA 29.41 NA 7.69 NA NA NA 27.78 27.27 NA 20.00 7.69 NA NA 14.29 NA NA NA K intron_retention CG42542,I_chr3R_11024452_11024586 chr3R + chr3R_11025433_11026407 chr3R_11025432_11025433;chr3R_11026407_11026408 chr3R_11025292_11025432;chr3R_11026408_11026470 19.79 NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG30492,C_chr2R_3522706_3523025,RI_chr2R_3536203_3536977,I_chr2R_3543397_3543455 chr2R + chr2R_3516481_3517681 chr2R_3516618_3517681 chr2R_3517682_3517750;chr2R_3516480_3516480 100.00 NA 100.00 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA 100.00 K alternative_donor CG42507,Trl,EI_chr3L_14750431_14750893,I_chr3L_14750431_14750985,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14750431_14750941;chr3L_14750431_14750762;chr3L_14750431_14751007;chr3L_14750431_14750893 chr3L_14750431_14750583 chr3L_14750331_14750430;chr3L_14751008_14751008 17.65 13.33 16.67 9.68 5.00 13.33 22.73 25.64 19.15 18.18 11.76 13.64 20.00 27.78 16.00 14.63 15.79 11.11 23.81 13.64 7.14 25.00 17.39 18.18 15.38 23.81 17.65 42.86 23.08 20.00 9.52 25.00 23.81 18.42 17.65 26.32 6.25 14.29 7.14 19.05 25.00 14.63 28.57 25.00 23.81 25.71 15.38 26.32 17.02 15.79 17.86 15.79 11.76 14.29 14.81 22.22 13.33 24.39 K jcn_only_AD Spp,Ets21C,rempA chr2L - chr2L_543350_543426 chr2L_543350_543415 chr2L_543282_543349;chr2L_543427_543492 100.00 100.00 100.00 99.58 99.23 100.00 99.42 99.43 100.00 100.00 99.37 100.00 100.00 100.00 99.42 100.00 100.00 100.00 100.00 100.00 99.35 99.54 100.00 100.00 100.00 100.00 99.61 100.00 99.42 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.27 99.69 99.42 100.00 100.00 100.00 100.00 98.55 99.47 100.00 97.78 98.88 99.68 100.00 100.00 100.00 99.63 100.00 100.00 99.47 98.92 K alternative_last_exon Dyb,I_chr2R_8337305_8339173,I_chr2R_8337742_8339173,I_chr2R_8338101_8339173,I_chr2R_8348603_8351844 chr2R + chr2R_8337742_8339479 chr2R_8337742_8338025 chr2R_8339480_8341559 chr2R_8338026_8338100 chr2R_8337642_8337741 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG15134 chr2L + chr2L_16904132_16904236 chr2L_16904144_16904236 chr2L_16904237_16904401;chr2L_16902932_16904131 13.04 14.29 9.09 16.28 13.04 14.29 11.63 18.60 19.44 14.29 19.05 13.21 14.29 14.29 8.00 20.00 10.71 4.35 8.00 16.00 5.88 13.64 10.81 12.00 13.04 12.00 10.71 6.67 14.29 13.04 8.33 NA 16.67 13.64 16.67 15.00 28.57 NA 10.53 8.82 NA 16.67 8.00 15.38 NA NA 7.69 9.52 15.69 NA 7.69 NA NA NA 11.43 NA NA NA K intron_retention CG5080,I_chr2L_1162147_1163759,I_chr2L_1163280_1163759,I_chr2L_1163629_1163759,I_chr2L_1163632_1163759 chr2L - chr2L_1163150_1163759 chr2L_1163149_1163150;chr2L_1163759_1163760 chr2L_1163000_1163149;chr2L_1163760_1163859 0.00 0.00 0.00 3.92 3.23 2.44 4.44 0.00 1.67 12.50 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 6.67 1.35 0.00 0.00 2.56 0.00 0.00 0.00 2.78 3.85 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 NA 3.70 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 5.00 K alternative_acceptor Lsd-1,CG10375 chr3R + chr3R_19590407_19590470 chr3R_19590407_19590449 chr3R_19590108_19590406;chr3R_19590471_19590681 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD ctp,I_chrX_4582351_4582483,I_chrX_4582382_4585669,I_chrX_4582627_4585669,RI_chrX_4582706_4585629,RI_chrX_4582706_4592329 chrX + chrX_4582706_4585669;chrX_4582325_4585669 chrX_4582351_4585669 chrX_4585670_4585729;chrX_4582282_4582324 98.98 99.15 98.51 99.19 98.43 98.01 98.06 98.11 98.95 98.39 98.46 99.37 97.21 98.85 99.55 99.26 99.54 98.71 98.85 99.56 98.92 99.45 99.03 99.59 98.59 99.72 98.85 95.63 99.69 98.50 99.39 98.98 98.94 98.98 98.58 99.67 99.22 99.06 99.34 98.95 99.15 98.83 98.18 99.35 97.95 99.44 98.73 99.19 98.23 99.29 99.31 99.23 98.97 99.31 99.02 98.40 99.30 98.05 K jcn_only_AA CG31156,EFI_chr3R_18436373_18436443 chr3R - chr3R_18435204_18436443 chr3R_18436373_18436443 chr3R_18436444_18436543 11.21 9.52 0.00 0.00 NA NA NA 13.79 15.91 NA NA 14.29 NA NA 6.90 4.35 NA NA 30.00 48.48 NA NA 8.00 4.55 NA 9.52 9.09 NA NA NA 48.15 NA NA 22.73 NA NA NA NA 4.17 16.67 NA 13.33 NA NA NA NA 12.90 NA 15.00 14.29 8.70 NA NA NA NA 4.35 4.00 18.18 K alternative_acceptor Dip-B chr3R + chr3R_9608174_9608429 chr3R_9608174_9608416 chr3R_9608012_9608173;chr3R_9608430_9608563 5.88 6.52 7.22 4.72 4.55 6.10 9.38 6.87 5.43 5.56 7.25 4.73 6.12 1.49 5.94 5.88 8.89 5.48 6.25 5.85 6.56 4.35 6.98 5.26 6.82 6.25 10.81 11.94 5.63 3.45 4.48 8.33 3.57 5.65 3.64 6.78 4.17 7.55 6.78 4.67 7.89 5.03 6.15 4.44 4.88 6.67 6.10 6.12 5.00 7.81 2.67 5.26 6.90 5.17 7.14 3.70 5.21 4.69 K alternative_acceptor Psn,RI_chr3L_20430213_20430358 chr3L + chr3L_20425808_20425896 chr3L_20425808_20425866 chr3L_20425774_20425807;chr3L_20425897_20426106 94.74 96.61 80.43 84.72 88.89 83.72 94.83 93.22 93.90 89.47 94.12 90.00 87.88 94.74 90.91 97.44 88.89 88.24 96.97 95.18 87.50 98.65 92.31 96.88 96.00 86.96 92.06 92.59 98.18 93.33 97.37 89.47 96.00 94.20 96.43 94.87 95.70 95.74 96.88 98.67 100.00 92.63 86.21 100.00 97.56 95.65 91.67 100.00 96.92 90.57 95.24 96.97 96.97 92.59 90.57 91.30 96.72 96.77 K intron_retention Cirl,R_chr2R_4502755_4503407 chr2R + chr2R_4503509_4503574 chr2R_4503508_4503509;chr2R_4503574_4503575 chr2R_4503408_4503508;chr2R_4503575_4503583 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 95.83 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA K alternative_donor CEI_chr3R_10927927_10937314,CG6934 chr3R - chr3R_10937912_10957329;chr3R_10937912_10957457 chr3R_10937912_10957499 chr3R_10937315_10937911;chr3R_10957500_10957513 0.00 0.00 2.50 0.00 0.00 0.00 3.70 2.08 0.00 0.00 0.00 1.47 6.25 0.00 3.23 0.00 0.00 2.04 4.00 1.61 0.00 2.86 0.00 0.00 0.00 0.00 0.00 3.45 1.79 1.96 0.00 5.88 0.00 0.00 0.00 2.78 0.00 3.57 2.22 1.82 0.00 0.00 0.00 1.85 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 12.50 2.70 K jcn_only_AD blw,I_chr2R_18686935_18687400,I_chr2R_18687257_18687400 chr2R + chr2R_18686775_18687400 chr2R_18687257_18687400 chr2R_18687401_18687500;chr2R_18686499_18686774 0.00 0.31 0.00 0.46 0.00 0.00 0.28 0.00 0.14 0.00 0.00 0.00 0.41 0.31 0.00 0.25 0.00 1.26 0.00 0.21 0.59 0.34 0.16 0.00 0.00 0.00 0.20 0.00 0.00 0.22 0.23 0.17 0.00 0.00 0.00 0.00 0.13 0.20 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 N alternative_donor CG3191,CG3091,I_chrX_2147635_2147990 chrX - chrX_2145388_2146756 chrX_2145388_2145704 chrX_2145228_2145387;chrX_2146757_2146893 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 65.52 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD I_chr2L_13965397_13965694,nimB3,RI_chr2L_13967695_13967746 chr2L - chr2L_13967695_13967750 chr2L_13967695_13967746 chr2L_13967595_13967694;chr2L_13967751_13967841 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 2.19 0.00 0.00 1.22 0.00 0.00 0.00 0.60 0.00 0.00 1.35 0.40 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 1.96 0.00 0.00 0.00 2.33 0.00 0.00 0.47 K alternative_acceptor CG8080,RI_chr2R_4978542_4978911,REI_chr2R_4978545_4978911,REI_chr2R_4979159_4979234,I_chr2R_4979276_4979936 chr2R - chr2R_4978557_4978911;chr2R_4978542_4978911 chr2R_4978545_4978911 chr2R_4978912_4979011;chr2R_4978445_4978541 22.22 8.33 25.00 27.27 30.77 30.00 36.36 17.65 15.38 25.00 28.57 9.09 12.50 23.08 20.00 16.67 16.67 23.08 27.27 36.36 15.38 0.00 25.00 22.22 35.71 14.29 30.77 25.00 18.18 21.43 21.43 11.11 21.43 23.81 18.18 0.00 21.74 27.27 9.09 25.71 15.38 25.00 15.38 15.38 21.05 25.93 30.00 27.27 20.00 41.67 19.05 20.00 22.22 17.65 26.67 23.53 27.27 24.00 K cassette Dyrk3,I_chr4_1231226_1233305,I_chr4_1232931_1232996,I_chr4_1233845_1234170 chr4 - chr4_1231226_1233305 chr4_1231226_1232378;chr4_1233242_1233305 chr4_1232379_1233241 chr4_1231145_1231225;chr4_1233306_1233405 100.00 100.00 100.00 98.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG42231,chif,CaBP1 chr2L - chr2L_16343305_16351926 chr2L_16343304_16343305;chr2L_16351926_16351927 chr2L_16342822_16343304;chr2L_16351927_16352093 0.00 NA NA 0.00 NA NA 2.44 0.00 6.25 NA NA 0.00 NA 0.00 NA NA NA NA NA 10.00 NA 0.00 NA 7.14 NA 0.00 0.00 NA NA NA 5.00 NA 6.67 11.76 0.00 NA 14.29 NA NA 10.00 NA 0.00 NA NA 0.00 12.50 13.33 NA 8.33 0.00 0.00 NA NA NA NA NA 0.00 NA N intron_retention Not1,I_chr2R_5463624_5463682 chr2R - chr2R_5455592_5455673 chr2R_5455591_5455592;chr2R_5455673_5455674 chr2R_5455002_5455591;chr2R_5455674_5455880 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 78.12 100.00 100.00 100.00 100.00 NA 100.00 76.00 72.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 100.00 100.00 NA K intron_retention rod,CG1635,I_chr3R_27416864_27416939 chr3R + chr3R_27413659_27413718 chr3R_27413658_27413659;chr3R_27413718_27413719 chr3R_27413427_27413658;chr3R_27413719_27413823 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 NA 0.00 6.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 5.00 0.00 0.00 4.35 0.00 0.00 NA 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention kermit,I_chr2R_4035901_4043493 chr2R - chr2R_4035901_4043918 chr2R_4035900_4035901;chr2R_4043918_4043919 chr2R_4035801_4035900;chr2R_4043919_4044128 61.36 65.52 57.14 52.50 54.17 57.14 69.05 45.00 70.27 44.00 58.33 63.64 50.00 67.65 61.36 53.70 52.94 66.67 68.97 49.43 84.62 53.57 51.06 65.00 64.00 73.08 63.16 85.71 51.61 65.38 57.58 45.45 55.26 61.40 61.76 76.92 65.22 67.86 58.97 56.52 46.15 63.49 69.57 55.56 65.22 55.56 64.29 45.71 64.71 57.14 64.58 52.00 63.64 47.83 67.57 52.63 68.97 50.00 K alternative_donor ctp,I_chrX_4582351_4582483,I_chrX_4582382_4585669,I_chrX_4582627_4585669,RI_chrX_4582706_4585629,RI_chrX_4582706_4592329 chrX + chrX_4582706_4585669;chrX_4582325_4585669 chrX_4582351_4585669 chrX_4585670_4585729;chrX_4582282_4582324 98.40 98.34 97.78 98.11 98.82 98.03 97.50 97.20 98.53 98.86 98.65 98.58 97.79 98.46 98.97 98.12 98.48 98.24 97.48 99.24 98.68 100.00 98.59 98.25 97.17 98.08 98.04 96.30 98.40 98.57 98.35 99.12 98.85 98.58 96.83 99.08 98.43 100.00 98.21 97.93 97.78 98.38 97.59 98.60 96.85 97.96 99.38 97.46 98.15 99.03 98.49 98.64 99.02 99.02 98.53 98.34 99.03 97.06 K alternative_acceptor Tao-1,I_chrX_19470426_19470727 chrX - chrX_19470426_19470727 chrX_19470429_19470727 chrX_19470728_19470827;chrX_19470326_19470425 98.00 96.55 98.41 94.74 97.78 100.00 97.01 98.51 98.17 98.11 97.44 98.84 97.83 97.30 98.08 96.88 100.00 98.18 97.92 98.04 98.00 99.10 98.11 98.73 97.62 96.36 97.59 100.00 100.00 98.48 100.00 96.30 98.25 100.00 98.00 98.15 97.58 96.43 97.09 98.97 96.30 100.00 100.00 95.71 97.06 97.96 97.62 98.44 98.92 100.00 96.67 96.00 97.06 97.14 98.31 100.00 97.22 97.50 K intron_retention CG12162,I_chr3R_1293876_1293924,I_chr3R_1294319_1294410 chr3R + chr3R_1293872_1293924 chr3R_1293871_1293872;chr3R_1293924_1293925 chr3R_1293776_1293871;chr3R_1293925_1294024 0.00 5.66 12.50 15.38 0.00 0.00 0.00 6.52 0.00 0.00 0.00 1.59 NA 0.00 0.00 0.00 0.00 0.00 0.00 6.94 0.00 17.95 2.67 2.38 0.00 0.00 8.06 3.92 6.90 0.00 0.00 0.00 5.49 0.00 0.00 10.77 3.61 0.00 3.61 2.86 7.55 5.48 NA 0.00 0.00 4.00 0.00 4.48 3.33 5.36 0.00 6.06 0.00 1.64 0.00 6.06 0.00 1.39 K intron_retention CG1116 chr3R + chr3R_1047048_1047113 chr3R_1047047_1047048;chr3R_1047113_1047114 chr3R_1046471_1047047;chr3R_1047114_1047195 71.43 75.00 NA 76.47 NA NA 68.75 75.00 81.82 NA NA 58.82 NA NA 72.73 71.43 NA NA 75.00 73.33 NA NA NA 72.73 NA 60.00 NA NA NA NA 63.64 NA NA 55.56 NA NA NA NA NA 75.00 54.55 69.23 87.50 NA NA 41.67 NA 46.67 80.00 58.82 NA NA NA NA 63.64 NA 54.55 73.33 K alternative_donor CDase chr3R + chr3R_26286617_26288536;chr3R_26286611_26288536;chr3R_26286613_26288536;chr3R_26286631_26288536 chr3R_26286512_26288536 chr3R_26288537_26288691;chr3R_26286221_26286511 77.27 NA NA 75.00 NA NA NA NA 71.43 100.00 NA 81.82 NA NA 88.89 NA NA NA NA NA NA NA 61.54 69.23 80.00 NA 57.14 NA 77.78 NA NA NA 63.64 77.78 50.00 77.27 NA NA 77.78 85.71 NA NA NA 77.78 NA 71.43 NA 75.00 81.82 76.92 77.78 90.00 69.23 81.82 NA 75.00 NA 70.00 K alternative_donor Vps20 chr2R + chr2R_18496124_18496188 chr2R_18496135_18496188 chr2R_18496189_18496298;chr2R_18496038_18496123 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.25 0.00 1.33 0.41 0.53 0.67 0.00 1.41 0.00 4.11 0.00 2.22 0.00 0.00 0.72 0.00 0.66 1.17 0.00 1.02 0.00 1.09 0.41 0.00 0.72 0.59 0.47 0.79 0.00 1.04 0.49 0.47 0.00 0.00 0.00 2.27 0.40 0.72 0.79 K jcn_only_AD CG8468 chr2R + chr2R_10107548_10114915 chr2R_10108271_10114915 chr2R_10114916_10116800;chr2R_10107405_10107547 100.00 100.00 100.00 98.69 100.00 99.68 100.00 100.00 99.84 100.00 100.00 100.00 100.00 99.24 99.72 99.73 100.00 99.01 100.00 100.00 100.00 99.68 100.00 99.80 99.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.74 99.76 100.00 99.84 100.00 99.81 99.59 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention dod chrX + chrX_21216980_21217348 chrX_21216979_21216980;chrX_21217348_21217349 chrX_21216647_21216979;chrX_21217349_21217891 0.00 0.00 0.00 0.99 1.45 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.54 1.20 0.00 0.00 0.80 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Ranbp16,I_chrX_15826655_15827277 chrX - chrX_15822964_15823373 chrX_15822964_15823205;chrX_15823300_15823373 chrX_15823206_15823299 chrX_15822907_15822963;chrX_15823374_15823435 4.26 NA 4.55 0.00 NA 6.67 5.56 2.86 2.70 NA 4.55 0.00 5.56 0.00 3.85 0.00 NA 3.23 4.76 3.12 3.45 14.29 7.14 4.76 NA 5.26 2.94 NA 0.00 NA 9.09 7.69 NA 7.14 4.35 7.69 7.14 5.56 6.25 2.94 NA 0.00 NA 3.70 5.00 0.00 4.17 5.56 2.94 6.67 3.85 NA 5.26 8.00 0.00 3.85 0.00 3.23 K intron_retention spz chr3R - chr3R_22892203_22892329 chr3R_22892202_22892203;chr3R_22892329_22892330 chr3R_22892041_22892202;chr3R_22892330_22892387 6.03 5.71 7.57 4.34 6.03 5.32 3.77 6.14 6.09 3.45 5.05 7.76 10.90 6.42 7.62 6.85 5.33 7.25 10.00 6.34 6.60 2.70 4.87 5.45 5.03 4.14 11.24 7.78 4.02 4.84 4.94 6.73 5.56 6.15 4.07 7.19 4.90 8.98 5.46 7.21 6.20 5.30 4.70 4.28 3.81 6.08 6.06 6.60 5.42 7.39 8.04 5.84 3.48 7.69 7.37 3.86 4.48 6.67 K intron_retention slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,I_chr2R_20289332_20290093 chr2R - chr2R_20286707_20287722 chr2R_20286706_20286707;chr2R_20287722_20287723 chr2R_20286631_20286706;chr2R_20287723_20287822 0.00 0.00 0.00 1.32 0.00 0.00 0.00 1.10 0.00 0.00 0.00 1.63 1.27 0.00 0.86 1.57 0.00 0.00 0.00 1.13 0.00 0.60 0.65 0.00 0.00 0.00 0.00 2.60 6.15 1.64 0.00 2.82 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.90 0.00 0.00 0.00 2.44 0.00 1.93 0.46 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17018,R_chr2L_22312023_22363414 chr2L + chr2L_22358907_22363429 chr2L_22358906_22358907;chr2L_22363429_22363430 chr2L_22358859_22358906;chr2L_22363430_22363514 30.70 33.33 24.14 60.00 41.67 23.08 28.57 37.14 35.71 NA NA 43.75 40.91 32.00 36.36 35.00 40.00 58.33 34.62 46.67 40.00 NA 20.00 NA NA 47.06 NA NA NA 25.00 29.17 NA 25.00 34.04 0.00 NA NA NA NA 13.79 NA 23.68 29.41 23.81 NA NA NA 12.00 28.57 NA 23.53 NA NA NA 29.03 NA NA 9.09 K jcn_only_AD Cdk4,RI_chr2R_12471503_12471656 chr2R + chr2R_12467202_12468346;chr2R_12467432_12468346;chr2R_12467241_12468346;chr2R_12467275_12468346;chr2R_12467225_12468346;chr2R_12467227_12468346;chr2R_12467261_12468346;chr2R_12467039_12468346 chr2R_12467474_12468346 chr2R_12468347_12468520;chr2R_12467030_12467038 3.78 3.70 2.63 4.44 NA 12.00 9.68 0.00 3.85 NA 3.33 8.33 2.63 3.23 0.00 1.92 3.85 9.09 4.76 4.85 8.33 6.45 0.00 0.00 NA 4.55 0.00 NA NA NA 3.23 NA 5.00 1.69 NA 8.70 0.00 NA NA 5.00 NA 0.00 NA NA 0.00 3.33 NA NA 4.35 6.90 3.85 4.76 NA NA 0.00 0.00 0.00 6.45 K intron_retention REI_chr3L_3042451_3043440,Jafrac2,I_chr3L_3042851_3043044,I_chr3L_3043202_3043271 chr3L + chr3L_3042773_3043044 chr3L_3042772_3042773;chr3L_3043044_3043045 chr3L_3042751_3042772;chr3L_3043045_3043144 8.34 NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG6701,RI_chr2R_9866896_9867532 chr2R - chr2R_9862880_9862938 chr2R_9862879_9862880;chr2R_9862938_9862939 chr2R_9862774_9862879;chr2R_9862939_9864809 0.00 0.00 0.00 1.38 0.00 0.00 1.35 0.00 0.68 1.82 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 1.52 0.65 0.00 0.00 1.39 3.31 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 K alternative_acceptor mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818597_7818853;chr3R_7818607_7818853 chr3R_7818575_7818853 chr3R_7818854_7818892;chr3R_7818507_7818574 22.50 28.12 33.33 28.95 21.88 35.48 17.39 32.35 22.35 11.76 22.50 19.18 15.22 23.08 21.43 31.37 26.67 20.83 33.33 24.00 27.27 6.67 21.88 17.39 25.00 24.14 12.50 19.35 11.76 34.62 27.27 21.43 54.84 29.41 21.05 20.83 4.55 3.70 11.54 15.56 30.77 25.68 22.50 13.79 17.65 29.27 17.39 38.89 25.61 21.21 26.67 8.33 28.57 44.44 19.51 21.43 31.25 48.57 K intron_retention CG42516,Obp44a chr2R - chr2R_4018678_4018760 chr2R_4018677_4018678;chr2R_4018760_4018761 chr2R_4016859_4018677;chr2R_4018761_4018808 74.53 64.29 80.00 75.00 81.82 70.00 58.06 77.42 62.86 NA 58.82 72.00 80.00 75.00 72.22 83.87 58.82 50.00 50.00 65.85 46.15 68.75 100.00 90.00 NA 73.33 93.75 NA NA 87.50 74.07 69.23 60.00 75.86 NA NA 88.89 NA 69.23 85.71 90.00 64.29 64.29 100.00 81.82 69.23 66.67 81.25 75.00 NA 100.00 NA 90.00 88.89 73.08 72.73 77.78 88.89 K alternative_donor CG31431 chr3R + chr3R_17696656_17697703;chr3R_17696730_17697703;chr3R_17696702_17697703 chr3R_17696581_17697703 chr3R_17697704_17697862;chr3R_17696406_17696580 5.13 5.13 8.18 7.41 6.15 4.65 5.39 7.37 5.41 9.09 6.82 5.62 3.06 6.86 4.88 7.79 4.94 10.34 6.78 6.83 1.20 3.77 12.05 8.00 0.00 2.94 4.49 4.35 5.45 7.41 6.73 1.61 5.06 3.75 7.55 2.27 5.36 6.06 6.94 8.16 4.94 3.21 4.65 2.30 1.54 4.17 6.35 0.76 3.45 9.43 6.86 5.00 0.00 2.50 4.69 5.88 4.62 0.00 K intron_retention eIF-1A chr3R + chr3R_14100703_14100758 chr3R_14100702_14100703;chr3R_14100758_14100759 chr3R_14100638_14100702;chr3R_14100759_14100863 100.00 100.00 100.00 100.00 100.00 99.78 99.87 100.00 99.81 99.62 100.00 100.00 100.00 99.76 99.83 100.00 100.00 99.78 100.00 99.79 99.77 100.00 99.52 100.00 99.69 100.00 99.82 99.63 100.00 100.00 100.00 100.00 100.00 99.87 99.65 100.00 99.78 99.65 99.83 99.78 100.00 99.78 99.76 100.00 100.00 99.78 100.00 100.00 100.00 100.00 100.00 99.55 99.71 100.00 100.00 99.75 99.77 100.00 K cassette spz chr3R - chr3R_22892607_22894865;chr3R_22892388_22894865;chr3R_22892388_22893079 chr3R_22892607_22892843,chr3R_22892388_22892843;chr3R_22892922_22893079,chr3R_22892922_22894865 chr3R_22892844_22892921 chr3R_22892330_22892387;chr3R_22894866_22895053 44.31 41.41 58.86 35.10 38.82 44.31 26.42 50.46 44.21 30.53 64.00 43.82 63.35 44.79 42.13 54.37 51.85 51.03 48.68 59.53 54.81 34.53 35.68 36.96 40.56 47.33 48.00 36.47 23.60 43.54 48.24 44.38 48.00 51.03 52.32 53.85 36.15 32.00 40.18 47.96 50.45 43.28 44.85 35.78 28.05 46.73 41.94 42.90 46.24 44.44 49.23 39.86 27.60 40.52 47.91 40.61 34.91 46.55 K jcn_only_AD vir-1,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,noncoding_2764,I_chr2L_12421830_12423260 chr2L - chr2L_12421830_12423322;chr2L_12421830_12423260;chr2L_12421830_12423333 chr2L_12421830_12423278 chr2L_12421816_12421829;chr2L_12423334_12423360 0.65 0.64 2.07 0.79 0.75 1.77 0.84 1.69 0.82 0.39 0.90 0.61 0.55 1.18 1.81 0.43 2.36 1.91 1.83 0.61 3.63 0.71 0.71 0.17 0.89 1.78 0.00 0.33 1.45 0.27 0.87 0.50 1.51 2.07 0.77 0.54 0.43 0.00 0.00 0.00 0.00 0.80 1.33 0.22 1.83 0.65 0.14 0.26 1.03 0.47 0.16 0.14 0.21 0.25 1.32 0.41 0.20 0.57 K alternative_donor RhoGAPp190,I_chrX_17544272_17544863,I_chrX_17546225_17546531 chrX - chrX_17544272_17546531;chrX_17544272_17546123 chrX_17544272_17546421 chrX_17544172_17544271;chrX_17546532_17546535 6.06 0.00 0.00 4.00 0.00 10.34 9.09 6.67 1.33 10.53 0.00 6.45 10.34 3.85 2.63 6.25 4.17 3.70 0.00 11.48 0.00 7.14 13.64 0.00 0.00 9.38 7.14 0.00 0.00 8.33 5.88 25.00 7.69 5.77 6.25 6.25 13.64 8.33 0.00 2.22 0.00 4.92 4.00 0.00 11.11 0.00 25.00 7.14 3.64 25.00 12.50 20.00 0.00 0.00 8.57 14.29 NA 10.53 K alternative_acceptor RnrS,I_chr2R_7872603_7872720 chr2R - chr2R_7872573_7872720 chr2R_7872603_7872720 chr2R_7872721_7872820;chr2R_7872503_7872572 1.27 0.53 1.11 1.73 0.00 0.59 3.02 0.56 0.90 1.68 1.54 1.88 1.84 0.69 1.00 0.72 1.05 1.96 1.71 1.25 0.66 2.44 1.60 1.40 1.59 1.13 2.58 2.63 1.41 0.93 1.20 2.70 0.00 0.55 1.72 0.00 1.27 0.99 1.27 2.91 1.64 0.87 1.31 2.19 0.00 0.00 1.85 0.00 0.87 1.72 1.09 1.94 0.85 1.38 0.43 1.40 1.72 0.00 N alternative_donor CG32594 chrX + chrX_14927033_14927638;chrX_14927381_14927638;chrX_14926607_14927638 chrX_14927496_14927638 chrX_14927639_14928125;chrX_14925576_14926606 1.00 1.05 1.13 1.06 0.00 0.62 1.66 1.49 1.33 0.93 0.76 0.77 1.82 2.04 1.12 2.72 0.76 0.78 1.54 0.59 0.72 5.05 0.96 1.00 1.77 0.00 1.60 1.94 0.66 0.93 0.63 1.36 0.48 1.25 1.55 0.00 0.38 0.55 0.42 0.76 0.66 1.15 0.85 1.11 0.00 0.39 1.05 0.61 1.65 1.38 0.92 2.11 0.74 1.24 0.53 1.23 1.21 1.12 K alternative_acceptor DnaJ-H,EI_chr2L_13164741_13164824,Sfmbt chr2L - chr2L_13164741_13164824 chr2L_13164763_13164824 chr2L_13164825_13164923;chr2L_13164641_13164740 85.71 NA NA 100.00 NA NA 91.67 90.00 76.92 NA NA 77.78 NA NA NA 80.00 NA NA NA 92.86 NA 90.00 92.31 NA NA NA 90.00 NA NA 77.78 71.43 NA 75.00 81.82 85.71 NA 100.00 NA NA 90.91 75.00 93.33 NA 88.89 NA 71.43 NA 88.89 87.50 77.78 75.00 77.78 NA 70.00 77.78 85.71 NA 100.00 K intron_retention CG17765,I_chr2R_6368423_6368594 chr2R + chr2R_6368048_6368594 chr2R_6368047_6368048;chr2R_6368594_6368595 chr2R_6367828_6368047;chr2R_6368595_6368674 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.19 1.00 0.00 0.33 0.00 1.01 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.32 0.00 0.00 0.00 0.42 0.00 0.54 0.00 0.41 0.00 0.00 0.52 0.00 0.36 0.47 0.64 0.54 0.00 0.40 0.00 0.19 0.00 0.36 0.44 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8979 chr2R - chr2R_7855985_7856051 chr2R_7855984_7855985;chr2R_7856051_7856052 chr2R_7855789_7855984;chr2R_7856052_7856064 63.12 NA NA 56.25 NA NA 70.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Abl,I_chr3L_16622304_16639909,RI_chr3L_16652567_16654512 chr3L - chr3L_16620293_16620601 chr3L_16620292_16620293;chr3L_16620601_16620602 chr3L_16620022_16620292;chr3L_16620602_16621188 10.94 7.69 10.39 9.17 6.25 8.70 20.69 8.91 7.74 13.64 9.38 11.11 3.64 8.93 9.78 12.28 3.33 8.96 10.91 5.81 10.94 30.06 9.65 16.00 21.43 9.23 15.49 12.12 19.72 11.00 12.00 13.16 10.66 8.87 12.00 17.50 11.97 13.25 14.93 14.42 12.07 9.41 10.91 12.07 10.67 16.00 15.38 13.95 12.14 12.28 10.59 17.31 12.00 5.26 9.80 8.47 0.00 4.55 K jcn_only_AA I_chr2L_13965397_13965694,nimB3,RI_chr2L_13967695_13967746 chr2L - chr2L_13967668_13967750 chr2L_13967695_13967750 chr2L_13967751_13967841;chr2L_13967595_13967667 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 99.39 99.12 99.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor MB8.chr3R.pasa.66,CG1105,I_chr3R_2892020_2892122,RI_chr3R_2892020_2892252,I_chr3R_2892305_2892645 chr3R - chr3R_2892020_2892122;chr3R_2892020_2892252 chr3R_2892020_2892645 chr3R_2891920_2892019;chr3R_2892646_2892745 95.56 97.06 96.30 100.00 100.00 94.12 93.88 95.00 94.03 100.00 95.83 92.73 86.21 93.75 95.56 89.47 92.31 96.43 96.43 96.30 95.65 97.73 96.23 95.83 92.59 100.00 94.59 96.30 94.29 96.88 90.00 96.55 100.00 93.33 93.94 94.59 97.73 95.35 97.37 90.74 93.94 95.71 92.31 97.30 96.43 95.56 95.83 94.29 93.75 93.75 95.00 85.71 100.00 95.83 95.35 94.44 97.87 93.02 K intron_retention CG11299,noncoding_8970,I_chr2R_19616762_19618431,I_chr2R_19619053_19619186 chr2R + chr2R_19616758_19618431 chr2R_19616757_19616758;chr2R_19618431_19618432 chr2R_19616662_19616757;chr2R_19618432_19618531 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 3.28 NA 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 1.35 0.00 6.67 0.00 0.00 0.00 4.17 0.00 NA NA 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7546 chr3L + chr3L_7508878_7508967 chr3L_7508877_7508878;chr3L_7508967_7508968 chr3L_7508741_7508877;chr3L_7508968_7509150 9.28 9.43 5.71 9.38 0.00 0.00 8.33 11.43 3.23 8.82 3.70 8.47 7.69 14.29 7.69 8.00 9.38 0.00 12.00 6.73 4.00 16.67 10.57 9.59 11.63 0.00 10.61 8.89 8.51 20.00 9.09 6.67 14.63 5.26 11.36 11.11 6.31 11.84 11.54 10.61 8.82 6.90 0.00 7.25 10.81 11.54 12.16 7.69 9.80 11.48 9.28 9.09 11.54 10.71 6.45 11.54 10.26 14.81 K jcn_only_AA CG9293,RI_chr2L_13386386_13386487,I_chr2L_13394941_13395015 chr2L - chr2L_13386688_13386756 chr2L_13386691_13386756 chr2L_13386757_13386818;chr2L_13386624_13386687 100.00 98.11 100.00 100.00 98.04 100.00 100.00 100.00 97.30 100.00 100.00 98.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 98.48 100.00 98.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 100.00 100.00 98.89 100.00 100.00 98.21 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Fmr1,I_chr3R_5930712_5930781,I_chr3R_5934794_5935245,I_chr3R_5934801_5935537 chr3R - chr3R_5930733_5930790 chr3R_5930733_5930781 chr3R_5930601_5930732;chr3R_5930791_5930881 14.24 11.85 9.92 13.98 17.54 17.78 15.25 14.96 12.33 14.71 12.21 12.26 13.43 13.78 10.33 13.09 13.79 12.79 19.62 14.40 15.29 18.75 18.86 17.77 11.11 12.05 12.06 13.57 24.24 13.07 13.67 19.49 19.10 12.24 16.97 8.07 20.63 15.87 14.24 16.63 10.24 16.57 7.47 15.35 16.48 22.22 18.82 14.68 11.94 12.88 16.85 13.10 14.53 13.92 13.64 14.29 17.69 13.78 K intron_retention CG31158,I_chr3R_18427389_18429185,CG31159 chr3R + chr3R_18427389_18428566 chr3R_18427388_18427389;chr3R_18428566_18428567 chr3R_18427289_18427388;chr3R_18428567_18428783 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 4.55 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 3.12 0.00 2.27 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 2.56 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG15097,I_chr2R_14712075_14712152,I_chr2R_14713403_14713523 chr2R - chr2R_14713186_14713523 chr2R_14713185_14713186;chr2R_14713523_14713524 chr2R_14713002_14713185;chr2R_14713524_14713623 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA 0.00 NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA K intron_retention Vinc,I_chrX_2114558_2116113 chrX - chrX_2109687_2109745 chrX_2109686_2109687;chrX_2109745_2109746 chrX_2109288_2109686;chrX_2109746_2109876 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3960284_3961104;chr2R_3960284_3960871 chr2R_3960284_3960631;chr2R_3960740_3961104,chr2R_3960740_3960871 chr2R_3960632_3960739 chr2R_3959868_3960283;chr2R_3961105_3961205 98.82 98.82 98.97 99.75 98.87 98.57 96.86 99.72 97.97 94.91 97.79 100.00 99.52 99.55 98.70 99.67 98.10 99.58 100.00 98.99 98.08 98.56 98.83 97.98 97.49 96.55 98.86 99.57 98.94 99.11 96.67 98.39 97.74 99.01 99.65 98.90 98.31 99.73 99.00 98.17 95.64 97.80 99.05 98.92 95.89 97.18 98.75 97.62 98.12 99.08 99.12 99.13 97.95 97.79 98.96 97.63 98.33 98.92 K intron_retention bun,I_chr2L_12520177_12536274,I_chr2L_12537393_12537634,RI_chr2L_12540901_12546409 chr2L - chr2L_12539487_12540515 chr2L_12539486_12539487;chr2L_12540515_12540516 chr2L_12537746_12539486;chr2L_12540516_12540692 100.00 97.50 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 98.21 100.00 97.62 100.00 100.00 99.12 97.37 97.96 98.53 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 98.77 97.10 100.00 98.02 100.00 100.00 100.00 95.83 96.97 100.00 97.62 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG17528,RI_chr2R_706735_711409,I_chr2R_706735_711443,I_chr2R_707374_711443 chr2R - chr2R_707442_711409;chr2R_707442_711615 chr2R_707442_711443 chr2R_706793_707441;chr2R_711616_711627 44.44 40.00 20.00 33.33 50.00 40.00 58.82 50.00 20.00 NA NA 25.00 50.00 37.50 NA 23.53 44.44 NA 45.45 50.00 NA NA 30.00 NA 50.00 50.00 25.00 NA NA NA 14.29 NA NA 47.06 20.00 NA NA NA 25.00 50.00 NA 54.55 20.00 60.00 NA NA NA 50.00 55.00 NA 42.86 NA NA NA 44.44 NA NA NA K intron_retention l(3)82Fd,I_chr3R_1125296_1161435,I_chr3R_1125296_1175189,I_chr3R_1129905_1148709,I_chr3R_1129905_1160126,I_chr3R_1131576_1133656,I_chr3R_1131693_1133665,I_chr3R_1147660_1148709 chr3R - chr3R_1131576_1133665 chr3R_1131575_1131576;chr3R_1133665_1133666 chr3R_1131476_1131575;chr3R_1133666_1133756 32.05 25.00 23.53 41.67 NA NA 41.67 35.29 37.04 NA NA 33.33 33.33 30.77 21.05 33.33 NA 30.77 52.63 35.29 NA NA NA NA NA 45.45 NA NA NA NA 26.67 NA NA 26.09 NA NA NA NA NA 38.46 NA 29.63 20.00 NA NA NA NA 66.67 20.00 NA 21.43 NA NA NA 29.41 NA NA NA K intron_retention su(f),I_chrXHet_77570_78035 chrXHet + chrXHet_79621_79677 chrXHet_79620_79621;chrXHet_79677_79678 chrXHet_79320_79620;chrXHet_79678_80006 1.54 0.78 1.11 6.06 0.00 3.39 0.00 1.83 3.31 3.85 1.27 2.50 1.64 1.54 2.25 4.44 0.00 0.00 0.00 1.86 0.00 1.59 0.75 1.60 4.62 0.00 6.19 10.14 11.86 0.00 0.00 0.00 2.25 2.52 2.35 5.62 1.28 0.00 0.00 0.62 0.00 1.21 0.00 1.61 0.00 1.96 1.97 0.00 2.04 2.58 1.40 0.00 3.88 0.00 0.98 3.62 4.74 1.18 K jcn_only_AD shi,RI_chrX_15786633_15786860,RE_chrX_15793108_15795563 chrX + chrX_15786474_15786860;chrX_15786603_15786860;chrX_15786285_15786860;chrX_15786200_15786860;chrX_15786394_15786860 chrX_15786615_15786860 chrX_15786861_15786960;chrX_15786192_15786199 0.00 0.00 0.00 1.72 0.00 0.00 0.00 1.30 0.00 NA 0.00 1.85 0.00 0.00 0.00 1.45 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 10.71 0.00 NA NA 0.00 0.00 NA 0.00 1.14 0.00 0.00 0.00 4.35 NA 0.00 0.00 0.00 2.78 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K intron_retention Tequila chr3L + chr3L_9084726_9084836 chr3L_9084725_9084726;chr3L_9084836_9084837 chr3L_9084633_9084725;chr3L_9084837_9084920 12.50 10.26 15.15 9.76 17.31 12.50 12.50 10.19 9.30 13.79 41.67 11.43 2.74 12.12 8.86 11.46 10.34 10.61 12.66 8.29 8.70 29.17 7.45 14.10 13.16 7.69 14.10 15.38 7.32 21.28 30.65 7.69 12.50 20.00 19.05 7.84 10.84 31.25 12.50 13.98 6.25 10.94 11.54 5.88 9.21 6.47 13.46 12.24 13.93 14.29 12.12 17.14 13.16 18.18 16.67 15.66 28.30 12.90 K alternative_acceptor Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046104;chr3L_16045251_16046108;chr3L_16045251_16045854;chr3L_16045251_16046111 chr3L_16045251_16046129 chr3L_16045216_16045250;chr3L_16046130_16046204 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD CG31216 chr3R + chr3R_15522379_15523033 chr3R_15522974_15523033 chr3R_15523034_15523168;chr3R_15522274_15522378 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,RI_chr3R_27801288_27801517,I_chr3R_27801288_27801596 chr3R - chr3R_27795508_27805244 chr3R_27795508_27798223;chr3R_27798276_27801169;chr3R_27801288_27801517;chr3R_27801688_27805244 chr3R_27798224_27798275;chr3R_27801170_27801287;chr3R_27801518_27801687 chr3R_27795478_27795507;chr3R_27805245_27805341 42.86 60.00 42.86 66.67 22.22 66.67 NA 38.46 41.67 33.33 100.00 64.29 42.86 75.00 42.86 55.56 NA 60.00 42.86 55.56 100.00 NA NA 12.50 NA 42.86 40.00 NA 14.29 NA 50.00 NA NA 60.00 NA NA NA NA 50.00 37.50 NA 41.67 40.00 NA NA 40.00 NA 50.00 42.86 12.50 37.50 33.33 NA NA 50.00 NA NA 66.67 K jcn_only_AA TepIV,EI_chr2L_19548696_19549582 chr2L + chr2L_19553916_19553969;chr2L_19553916_19553978 chr2L_19553916_19553975 chr2L_19553362_19553915;chr2L_19553979_19556092 95.15 94.22 90.50 94.59 99.36 95.42 94.07 96.26 92.40 93.75 94.69 95.95 95.15 96.34 93.63 96.68 93.33 95.57 95.45 93.88 92.90 95.20 97.36 93.44 97.69 92.68 96.98 93.60 96.14 95.77 95.32 93.72 95.89 95.02 95.39 92.89 92.93 97.96 96.20 94.09 95.25 95.34 95.86 95.09 94.62 95.34 95.51 94.60 94.68 95.52 94.83 93.41 96.18 94.12 95.43 93.17 97.09 94.74 K jcn_only_AA CG6656,RI_chr3R_17701533_17702073,CG33092 chr3R + chr3R_17701533_17702073 chr3R_17701533_17702069 chr3R_17701437_17701532;chr3R_17702074_17702162 98.82 100.00 100.00 100.00 100.00 97.22 100.00 100.00 99.44 97.56 97.56 99.24 100.00 98.41 98.84 100.00 100.00 98.85 98.57 99.53 98.28 98.96 97.39 100.00 97.56 100.00 100.00 98.31 93.94 100.00 97.70 98.18 98.92 98.17 100.00 NA 99.43 97.96 97.28 98.80 96.88 99.41 100.00 94.87 95.38 100.00 98.99 98.21 100.00 97.62 100.00 97.87 96.91 98.36 97.83 98.31 98.79 98.48 K alternative_donor ALiX,I_chr3R_23531574_23532266 chr3R - chr3R_23522554_23522613 chr3R_23522554_23522610 chr3R_23522185_23522553;chr3R_23522614_23522796 100.00 99.31 100.00 100.00 100.00 98.18 100.00 98.61 99.56 98.97 100.00 99.18 100.00 100.00 98.21 97.44 98.28 98.57 100.00 99.40 100.00 99.43 100.00 98.79 100.00 100.00 98.56 100.00 99.28 100.00 100.00 98.63 100.00 98.78 100.00 100.00 100.00 99.33 99.10 100.00 100.00 99.34 100.00 100.00 100.00 100.00 100.00 98.63 100.00 99.49 99.26 100.00 100.00 99.36 98.11 98.31 99.06 100.00 K intron_retention Ac3,I_chr2L_21635211_21637957,I_chr2L_21643253_21646594 chr2L + chr2L_21637787_21637957 chr2L_21637786_21637787;chr2L_21637957_21637958 chr2L_21637745_21637786;chr2L_21637958_21638057 7.14 6.67 0.00 0.00 NA NA 12.50 0.00 12.50 0.00 NA 9.52 NA 11.76 5.56 0.00 0.00 NA 16.67 8.82 NA 41.67 8.70 17.39 0.00 5.88 13.79 NA NA 16.67 1.85 7.14 0.00 0.00 0.00 15.00 3.45 9.52 15.62 0.00 NA 12.00 NA 26.32 6.67 NA 16.67 NA 3.85 9.68 6.45 15.38 0.00 14.29 0.00 14.29 NA NA K alternative_donor CG10194,RI_chr2L_19489213_19489295 chr2L - chr2L_19489213_19489299 chr2L_19489213_19489295 chr2L_19489113_19489212;chr2L_19489300_19489395 6.67 NA NA 9.52 NA NA 0.00 NA 13.33 NA 6.67 0.00 NA NA 7.69 7.14 NA NA NA 21.05 NA 8.33 5.26 0.00 NA 5.56 4.76 NA NA NA 18.75 NA NA 6.67 NA NA 0.00 7.69 6.25 5.88 NA 6.25 NA 10.00 NA 0.00 6.25 NA 4.17 5.26 14.29 NA NA 6.67 NA 6.67 14.29 NA K alternative_donor CG42507,Trl,EI_chr3L_14750431_14750893,I_chr3L_14750431_14750985,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14750431_14750941;chr3L_14750431_14751007;chr3L_14750431_14750893;chr3L_14750431_14750583 chr3L_14750431_14750762 chr3L_14750331_14750430;chr3L_14751008_14751008 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3L_3151185_3151263,CG32280,CG32278 chr3L + chr3L_3171107_3171163 chr3L_3171106_3171107;chr3L_3171163_3171164 chr3L_3170945_3171106;chr3L_3171164_3171919 0.00 1.85 0.00 18.18 0.00 4.44 5.08 1.89 2.23 0.00 0.00 0.00 0.00 0.00 0.00 1.98 0.00 0.00 1.56 0.72 0.00 3.03 1.23 0.00 0.00 0.00 3.92 0.00 2.90 0.00 1.52 2.61 1.72 1.98 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.61 1.72 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 2.67 0.00 0.00 0.00 K cassette pgant5,I_chr2L_5079575_5093241 chr2L - chr2L_5079575_5093444 chr2L_5079575_5092874;chr2L_5092902_5093444 chr2L_5092875_5092901 chr2L_5079475_5079574;chr2L_5093445_5093575 30.77 36.36 20.00 29.41 NA 25.00 26.32 30.00 32.43 NA NA 38.10 33.33 22.22 23.08 37.14 20.00 NA 38.10 34.78 20.00 NA 26.67 40.00 NA NA 45.45 NA NA NA 25.00 NA NA 23.08 NA NA 27.27 NA NA 41.67 NA 40.00 40.00 30.77 NA NA NA NA 45.45 NA 30.77 NA NA NA 30.77 NA NA NA K intron_retention Or43b,Kdm4A chr2R - chr2R_3808978_3809272 chr2R_3808977_3808978;chr2R_3809272_3809273 chr2R_3808620_3808977;chr2R_3809273_3810210 70.30 NA 73.33 85.71 NA NA 64.29 78.95 66.67 NA NA 66.67 NA 77.78 NA 74.19 88.89 NA 75.00 70.59 NA 50.00 NA NA NA 63.64 41.67 NA NA NA 70.00 NA NA 66.67 NA NA NA NA NA 80.00 NA 81.82 NA NA NA 69.23 NA 91.67 66.67 NA 50.00 NA NA NA 83.33 64.29 53.85 85.71 K intron_retention CG6218,RI_chr3R_11168116_11168762,I_chr3R_11171570_11171630 chr3R - chr3R_11168116_11168689 chr3R_11168115_11168116;chr3R_11168689_11168690 chr3R_11168016_11168115;chr3R_11168690_11168799 12.50 NA NA 25.00 NA NA NA 12.50 6.67 NA NA 21.43 NA NA 6.25 30.77 33.33 NA NA 25.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 12.50 NA NA NA NA NA NA NA 21.74 NA NA NA NA NA NA 12.50 NA NA NA NA NA 6.67 NA NA NA K alternative_donor alpha-Man-I,I_chrX_10218352_10219759,I_chrX_10218390_10219759 chrX - chrX_10218352_10219816;chrX_10218352_10219918;chrX_10218352_10219759;chrX_10218352_10219665;chrX_10218352_10219823;chrX_10218352_10219708 chrX_10218352_10219846 chrX_10218290_10218351;chrX_10219919_10219979 14.29 14.29 16.67 7.69 16.67 11.11 10.00 17.65 15.79 50.00 0.00 20.00 NA 11.11 12.50 19.05 16.67 16.67 12.50 7.14 16.67 11.11 12.50 14.29 14.29 14.29 12.50 NA NA 11.11 28.57 NA 14.29 8.33 NA 16.67 0.00 14.29 NA 12.50 33.33 30.77 12.50 33.33 NA 20.00 NA 0.00 6.67 33.33 10.00 25.00 0.00 NA 22.22 0.00 0.00 33.33 K intron_retention CG30339,I_chr2R_5496948_5497550,F_chr2R_5549824_5554869 chr2R - chr2R_5488637_5488689 chr2R_5488636_5488637;chr2R_5488689_5488690 chr2R_5488007_5488636;chr2R_5488690_5489245 3.85 NA NA NA NA NA 4.76 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA 0.00 5.88 NA 14.29 NA NA NA NA NA 3.85 NA NA NA NA NA 0.00 NA NA NA NA 4.17 7.14 NA NA NA NA NA 5.26 NA 0.00 NA NA NA NA NA NA NA K alternative_donor Pi3K92E,I_chr3R_16459436_16459551,I_chr3R_16459436_16459848 chr3R - chr3R_16459436_16460267;chr3R_16459436_16460340;chr3R_16459436_16460287;chr3R_16459436_16459551 chr3R_16459436_16459848 chr3R_16459336_16459435;chr3R_16460341_16460435 3.57 0.00 5.26 5.26 0.00 0.00 3.70 9.38 7.14 0.00 8.33 0.00 5.26 3.57 4.55 2.70 5.88 7.14 4.76 6.67 7.69 0.00 3.03 0.00 0.00 5.88 5.26 7.69 12.50 0.00 8.00 0.00 14.29 6.67 0.00 4.55 0.00 0.00 0.00 8.11 0.00 3.12 6.67 3.57 0.00 0.00 0.00 0.00 3.12 0.00 4.76 0.00 0.00 0.00 4.17 8.33 9.09 0.00 K intron_retention CG4266,I_chr2R_17052549_17053657 chr2R - chr2R_17052549_17054234 chr2R_17052548_17052549;chr2R_17054234_17054235 chr2R_17052449_17052548;chr2R_17054235_17054339 0.00 NA 7.14 6.90 NA NA 6.25 9.09 4.35 NA NA 7.14 11.11 NA NA 4.76 NA NA 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 9.09 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 K intron_retention bl,I_chr2R_16481586_16483061 chr2R + chr2R_16483169_16483262 chr2R_16483168_16483169;chr2R_16483262_16483263 chr2R_16483062_16483168;chr2R_16483263_16483319 0.00 0.00 0.00 0.00 0.00 0.00 0.93 1.64 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748984_19749899;chr2R_19748984_19750012 chr2R_19748984_19749783 chr2R_19748884_19748983;chr2R_19750013_19750013 67.25 NA NA 65.38 NA 79.17 80.65 58.33 75.00 NA NA 60.61 NA NA NA 64.00 NA NA NA 65.52 65.00 NA NA NA NA NA NA NA NA NA 42.42 NA NA 68.97 NA NA NA NA NA 70.00 NA 70.27 NA NA NA NA NA NA 70.37 NA NA NA NA NA 77.78 NA NA 65.00 K intron_retention NFAT,RI_chrX_13543535_13546911,I_chrX_13544101_13544542 chrX + chrX_13550068_13554772 chrX_13550067_13550068;chrX_13554772_13554773 chrX_13549884_13550067;chrX_13554773_13556719 0.00 0.00 3.70 6.12 4.44 0.00 11.43 0.00 1.98 0.00 0.00 2.25 0.00 0.00 4.65 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.89 5.41 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.26 7.14 0.00 0.00 0.00 0.00 0.00 2.90 0.00 2.35 0.00 0.00 0.00 0.00 0.00 4.00 NA K intron_retention CG32479,CG34056,CG34057 chr3L + chr3L_873876_873990 chr3L_873875_873876;chr3L_873990_873991 chr3L_873308_873875;chr3L_873991_874881 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ena chr2R + chr2R_15043420_15046238 chr2R_15043419_15043420;chr2R_15046238_15046239 chr2R_15043239_15043419;chr2R_15046239_15046560 0.00 0.00 0.00 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 1.59 2.94 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 1.22 NA 0.57 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 NA K alternative_donor CG4858,I_chr3L_20520381_20520577,EI_chr3L_20520642_20520692 chr3L + chr3L_20520377_20520692;chr3L_20520381_20520692 chr3L_20520642_20520692 chr3L_20520693_20520792;chr3L_20520281_20520376 4.00 2.63 2.50 5.41 3.12 3.85 4.69 9.30 5.97 4.00 3.12 7.94 4.00 6.45 2.94 4.76 3.85 7.69 3.12 1.37 3.85 12.12 3.70 5.36 5.41 5.41 5.97 7.27 1.12 2.17 2.44 3.64 3.77 5.26 3.23 6.45 5.97 7.89 6.06 7.79 1.43 5.00 5.88 3.39 2.94 6.02 3.77 2.99 6.00 9.09 4.76 7.14 2.33 4.00 3.12 5.08 2.83 3.57 K intron_retention rtet,RE_chr3R_16939259_16939667 chr3R + chr3R_16936280_16936337 chr3R_16936279_16936280;chr3R_16936337_16936338 chr3R_16935974_16936279;chr3R_16936338_16936556 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N cassette unc-13,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_902576_903586;chr4_899619_903586;chr4_897821_903586 chr4_897821_903242,chr4_902576_903242,chr4_899619_903242;chr4_903350_903586 chr4_903243_903349 chr4_897721_897820;chr4_903587_903686 57.45 55.56 80.95 31.34 45.00 65.22 53.49 44.29 57.14 46.15 85.71 41.07 62.50 62.50 51.72 65.79 65.00 73.33 55.17 64.58 66.67 65.38 53.49 51.72 39.02 58.14 45.90 50.00 60.00 42.86 60.00 71.43 56.00 55.77 50.00 22.00 50.00 75.00 66.67 71.43 39.13 51.11 52.38 57.45 66.67 58.33 62.50 60.00 46.00 81.25 46.88 58.82 85.71 87.50 64.00 56.25 53.33 70.59 K intron_retention Brca2 chr2R + chr2R_20414569_20414628 chr2R_20414568_20414569;chr2R_20414628_20414629 chr2R_20413676_20414568;chr2R_20414629_20414700 0.00 NA NA 9.52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA K alternative_donor Hsc70Cb chr3L + chr3L_14030513_14030577;chr3L_14030503_14030577 chr3L_14030522_14030577 chr3L_14030578_14030850;chr3L_14030355_14030502 50.00 NA NA 70.00 NA NA 38.46 44.44 43.75 NA NA 50.00 NA NA NA NA NA NA 62.50 50.00 NA NA NA NA NA NA NA NA 60.00 NA 55.56 NA NA 70.00 NA NA NA NA NA 50.00 NA 37.50 NA NA NA NA NA NA 50.00 NA NA NA NA NA 42.86 NA NA NA K intron_retention CG1514,Ykt6 chrX + chrX_7810928_7810987 chrX_7810927_7810928;chrX_7810987_7810988 chrX_7810244_7810927;chrX_7810988_7812532 0.00 0.00 0.00 1.41 0.00 0.00 0.00 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.12 0.00 0.00 0.00 0.00 1.89 0.00 1.33 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention tankyrase chr3R - chr3R_21483920_21486313 chr3R_21483919_21483920;chr3R_21486313_21486314 chr3R_21483137_21483919;chr3R_21486314_21487087 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 13.33 0.00 0.00 NA NA 0.00 5.26 NA 0.00 NA NA 0.00 0.00 0.00 0.00 2.70 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA K alternative_acceptor Rme-8 chr2R - chr2R_5063437_5063595 chr2R_5063440_5063595 chr2R_5063596_5063740;chr2R_5063238_5063436 40.91 39.13 50.00 38.33 48.15 46.67 40.82 34.85 38.67 33.33 48.15 43.55 39.29 47.22 48.65 34.78 37.14 38.89 35.71 40.68 42.31 34.62 48.00 38.46 39.39 37.84 37.50 42.86 35.71 33.33 33.33 NA 47.83 48.15 45.45 44.00 48.28 33.33 39.39 45.16 NA 44.44 36.67 42.11 NA 41.67 NA 46.67 53.03 36.36 42.86 40.91 54.55 NA 41.86 NA NA NA K alternative_donor scrib,I_chr3R_22362324_22363015,I_chr3R_22381374_22399575,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22362244_22363092;chr3R_22362120_22363092;chr3R_22362315_22363092;chr3R_22362254_22363092;chr3R_22362324_22363092;chr3R_22362142_22363092 chr3R_22362224_22363092 chr3R_22363093_22363115;chr3R_22362112_22362119 5.88 7.14 9.62 9.46 5.00 10.71 4.62 2.82 4.55 5.26 7.50 2.78 2.70 4.76 7.14 6.35 5.26 5.41 7.14 2.17 4.65 3.45 3.92 13.89 10.00 5.88 6.25 10.53 7.55 3.80 7.14 0.00 1.52 4.23 4.76 3.03 2.63 9.09 5.13 3.70 7.32 6.33 5.88 5.26 13.89 14.63 9.09 7.69 7.25 0.00 6.52 6.90 8.33 0.00 5.88 13.33 0.00 2.99 K alternative_donor Tsp42Ee,RI_chr2R_2904593_2904783 chr2R + chr2R_2900622_2904517 chr2R_2901155_2904517 chr2R_2904518_2904592;chr2R_2900538_2900621 0.34 0.33 0.21 0.17 0.50 0.31 0.47 0.24 0.38 0.32 0.61 0.37 0.42 0.50 0.29 0.23 0.36 0.33 0.31 0.21 0.34 0.56 0.47 0.37 0.37 0.35 0.59 1.51 0.68 0.65 0.19 0.16 0.11 0.28 0.49 0.60 0.59 0.37 0.24 0.46 0.17 0.29 0.40 0.48 0.34 0.23 0.26 0.65 0.28 0.27 0.36 0.45 0.10 0.11 0.20 0.22 0.23 0.18 K alternative_donor CG5903 chr3R - chr3R_11971429_11971499 chr3R_11971429_11971480 chr3R_11971276_11971428;chr3R_11971500_11972081 100.00 100.00 100.00 100.00 100.00 97.30 98.21 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 98.72 100.00 100.00 100.00 100.00 96.15 100.00 100.00 98.85 100.00 100.00 99.12 100.00 100.00 96.15 100.00 100.00 100.00 98.33 100.00 100.00 97.44 100.00 98.70 98.65 98.33 98.70 100.00 100.00 97.22 98.85 100.00 97.14 100.00 98.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor Cf2,I_chr2L_4882802_4882864 chr2L - chr2L_4882493_4882888 chr2L_4882493_4882864 chr2L_4882368_4882492;chr2L_4882889_4882964 29.03 NA NA NA NA NA NA 23.53 45.45 NA NA 38.46 NA NA NA NA NA NA NA 33.33 NA 27.27 31.25 NA NA NA 27.78 13.33 50.00 23.08 NA 45.45 30.00 25.00 NA 41.67 25.00 40.00 NA 26.47 26.67 60.00 NA 25.00 25.00 35.71 NA 29.03 18.18 NA 15.38 NA NA NA 30.00 NA NA 30.00 K alternative_donor CG9588,omd chr3R - chr3R_9501459_9501552 chr3R_9501459_9501522 chr3R_9500847_9501458;chr3R_9501553_9501849 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 97.37 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Gbeta13F,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754284_15755409;chrX_15754356_15755409 chrX_15755345_15755409 chrX_15755410_15755509;chrX_15754256_15754283 5.48 3.60 3.67 2.05 9.89 5.32 10.48 4.67 7.05 8.16 7.25 10.99 13.68 6.35 7.14 0.94 5.05 1.30 3.03 5.48 1.41 18.00 4.93 11.76 4.88 2.44 2.59 9.80 1.61 5.41 4.76 10.20 9.23 7.41 4.44 1.67 4.94 6.10 2.67 13.18 8.62 5.21 11.71 5.48 8.82 13.13 4.71 12.50 6.00 4.26 7.20 9.02 0.00 4.17 5.34 2.60 5.56 8.82 K intron_retention CG42533,EI_chr2L_7473200_7473297,RI_chr2L_7473200_7473419,F_chr2L_7476906_7476978 chr2L - chr2L_7473200_7473419 chr2L_7473199_7473200;chr2L_7473419_7473420 chr2L_7473100_7473199;chr2L_7473420_7473519 45.24 45.45 53.85 63.64 72.73 59.09 56.25 65.79 45.24 26.09 50.00 45.16 52.17 85.00 46.15 41.18 47.37 61.54 50.00 40.62 41.67 35.48 41.18 55.56 35.29 56.25 53.85 60.00 38.10 50.00 24.39 41.94 43.90 53.66 41.67 31.03 48.28 46.15 36.00 36.54 42.86 33.33 50.00 37.50 28.57 36.21 42.86 30.00 56.00 44.44 46.15 50.00 33.33 52.94 53.57 35.00 37.04 32.47 K intron_retention CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3017726_3017779 chr2L_3017725_3017726;chr2L_3017779_3017780 chr2L_3017384_3017725;chr2L_3017780_3017868 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 4.21 0.95 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 3.70 0.00 2.99 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 1.96 K alternative_acceptor CG5720 chr3R - chr3R_20141243_20141313 chr3R_20141252_20141313 chr3R_20141314_20143563;chr3R_20140982_20141242 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Not1,I_chr2R_5463624_5463682 chr2R - chr2R_5457662_5457718 chr2R_5457661_5457662;chr2R_5457718_5457719 chr2R_5456490_5457661;chr2R_5457719_5460288 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA B52,E_chr3R_9488770_9491174 chr3R + chr3R_9491971_9492016;chr3R_9491971_9492077 chr3R_9491971_9492140 chr3R_9491806_9491970;chr3R_9492141_9492586 100.00 99.86 100.00 100.00 100.00 100.00 98.92 99.66 99.51 100.00 100.00 100.00 99.47 100.00 100.00 100.00 100.00 100.00 100.00 99.73 100.00 100.00 100.00 100.00 99.25 99.60 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.78 99.81 99.42 99.72 99.69 99.78 100.00 100.00 100.00 100.00 100.00 98.79 99.69 100.00 99.56 99.86 99.75 99.87 100.00 100.00 100.00 100.00 100.00 99.68 100.00 K intron_retention I_chrX_15680663_15680821,Rhp chrX + chrX_15684422_15684775 chrX_15684421_15684422;chrX_15684775_15684776 chrX_15684280_15684421;chrX_15684776_15684892 7.42 NA NA NA NA NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA 7.14 NA 20.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K multi_cassette CG30118,I_chr2R_14320281_14325712,I_chr2R_14325118_14325712 chr2R - chr2R_14320281_14325712 chr2R_14320281_14324101;chr2R_14324234_14325079;chr2R_14325118_14325712 chr2R_14324102_14324233;chr2R_14325080_14325117 chr2R_14320181_14320280;chr2R_14325713_14325780 83.33 100.00 87.50 90.00 80.00 83.33 50.00 100.00 90.91 NA NA 100.00 NA NA 85.71 87.50 83.33 100.00 100.00 77.78 100.00 62.50 83.33 83.33 NA 75.00 100.00 71.43 NA 80.00 72.73 NA 83.33 100.00 NA NA 87.50 60.00 83.33 83.33 75.00 88.89 100.00 60.00 83.33 85.71 80.00 85.71 76.92 71.43 83.33 100.00 100.00 75.00 83.33 100.00 83.33 100.00 K intron_retention Shawn_Tyler,Zw chrX + chrX_19564777_19564838 chrX_19564776_19564777;chrX_19564838_19564839 chrX_19564739_19564776;chrX_19564839_19565056 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 5.06 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 K intron_retention CG7766,I_chrX_8993495_8994545,I_chrX_8991338_8991387 chrX - chrX_8989685_8991387 chrX_8989684_8989685;chrX_8991387_8991388 chrX_8989428_8989684;chrX_8991388_8991487 78.26 78.05 73.53 78.95 84.00 72.22 52.78 58.33 86.79 80.00 85.19 76.19 78.26 77.78 81.25 74.19 78.57 86.96 65.71 75.00 75.00 83.33 80.28 76.27 71.88 64.71 81.25 88.89 69.49 86.05 52.38 79.17 76.09 82.86 70.00 88.57 93.18 82.61 88.71 77.36 62.96 81.25 78.26 90.70 64.52 72.09 76.67 52.78 82.93 78.95 78.18 84.62 90.00 79.31 78.12 87.50 77.27 75.00 K alternative_donor CG10089 chr3L - chr3L_13462170_13462301 chr3L_13462170_13462235 chr3L_13462053_13462169;chr3L_13462302_13462312 92.31 90.00 80.00 94.74 100.00 94.12 89.47 89.47 83.33 100.00 90.00 88.46 100.00 83.33 100.00 100.00 90.00 94.74 93.33 84.62 100.00 92.31 93.33 92.31 66.67 100.00 81.25 NA 100.00 90.00 80.00 88.89 92.31 95.45 84.62 84.62 80.00 90.00 93.33 100.00 66.67 95.24 91.67 100.00 100.00 88.89 91.67 90.91 96.15 92.86 93.33 87.50 100.00 100.00 93.33 80.00 95.00 94.44 K alternative_last_exon CG30115 chr2R - chr2R_14448674_14498185 chr2R_14488891_14498185 chr2R_14447029_14448673 chr2R_14488607_14488890 chr2R_14498186_14498559 4.76 0.00 10.00 3.70 0.00 5.88 18.18 9.09 5.00 0.00 13.33 13.51 14.29 12.50 10.53 18.75 7.14 13.33 10.53 5.41 12.50 7.79 4.17 4.17 3.57 7.69 2.63 4.55 9.38 3.03 5.00 0.00 5.71 6.45 3.23 3.70 1.75 6.25 3.92 4.00 0.00 7.50 7.69 3.12 4.55 4.55 5.26 9.68 5.56 3.45 4.17 4.17 0.00 0.00 4.35 4.76 0.00 0.00 K intron_retention RhoL chr3R - chr3R_5323525_5323601 chr3R_5323524_5323525;chr3R_5323601_5323602 chr3R_5323354_5323524;chr3R_5323602_5323886 0.00 0.00 0.00 0.93 0.00 0.83 0.00 0.26 0.60 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.50 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.45 0.51 0.00 0.59 1.20 1.38 0.87 0.00 0.32 0.31 0.00 0.00 1.49 0.00 0.61 0.30 1.24 0.34 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.59 0.59 K alternative_donor CG34148 chr3R - chr3R_17703800_17703967 chr3R_17703800_17703954 chr3R_17703658_17703799;chr3R_17703968_17704030 100.00 NA 100.00 NA NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 87.50 NA 100.00 NA 100.00 90.91 94.12 100.00 NA 87.50 83.33 NA NA 84.62 100.00 100.00 NA 100.00 90.91 100.00 95.24 87.50 NA NA 100.00 88.89 91.67 100.00 95.00 100.00 100.00 100.00 94.74 100.00 100.00 95.24 100.00 NA 100.00 100.00 87.50 100.00 100.00 95.45 97.06 K intron_retention Itp-r83A chr3R + chr3R_1362629_1362692 chr3R_1362628_1362629;chr3R_1362692_1362693 chr3R_1362436_1362628;chr3R_1362693_1362815 6.78 NA NA 4.76 NA 0.00 15.38 4.65 8.33 NA NA 8.33 9.09 0.00 0.00 6.78 0.00 11.11 6.90 13.79 0.00 0.00 14.29 14.29 NA 42.86 23.53 NA 16.67 0.00 3.57 0.00 6.67 12.12 0.00 NA NA NA NA 6.25 25.00 4.76 5.00 9.09 NA 11.76 NA 9.09 7.32 17.65 0.00 NA NA NA 0.00 NA NA 2.70 K alternative_acceptor CG14235,noncoding_24847,CG18809,noncoding_24848 chrX - chrX_19635202_19638294;chrX_19635199_19638294 chrX_19635236_19638294 chrX_19638295_19638317;chrX_19634765_19635198 0.95 1.45 0.00 1.44 0.35 0.42 0.79 0.72 0.97 0.84 0.74 0.92 0.92 0.96 0.85 1.69 0.92 1.15 0.70 1.28 0.38 1.27 0.96 0.74 0.69 0.38 0.71 0.74 2.56 2.31 0.29 1.92 2.90 0.90 2.15 0.85 0.95 0.49 0.95 0.68 2.50 0.57 1.05 0.85 1.56 1.85 1.51 3.51 1.31 1.73 1.83 1.12 0.76 1.50 0.32 1.45 0.78 1.71 K intron_retention sd,noncoding_23930,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15706568_15707633 chrX_15706567_15706568;chrX_15707633_15707634 chrX_15706468_15706567;chrX_15707634_15707635 94.12 NA NA 91.67 NA NA 100.00 94.12 86.67 NA 100.00 100.00 NA 100.00 NA 92.86 NA NA 90.00 92.86 NA NA 88.89 NA NA NA 90.91 NA 88.89 94.74 100.00 NA 100.00 100.00 NA 94.12 NA NA NA 88.89 NA 100.00 NA NA NA NA NA 91.67 92.31 NA 90.91 NA NA NA 100.00 NA NA 100.00 K cassette CG3630 chrX + chrX_2061201_2064821 chrX_2061201_2062101;chrX_2062267_2064821 chrX_2062102_2062266 chrX_2061038_2061200;chrX_2064822_2065118 100.00 100.00 NA NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA NA NA NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 88.89 NA NA 100.00 88.89 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 K intron_retention CG10874 chr2L - chr2L_2190647_2190706 chr2L_2190646_2190647;chr2L_2190706_2190707 chr2L_2189869_2190646;chr2L_2190707_2190784 14.29 NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.84 5.88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA 0.00 NA NA NA 14.29 NA NA NA 14.29 NA NA NA 11.76 NA K jcn_only_AA Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8462783_8463253 chr3L_8462783_8463187 chr3L_8462665_8462782;chr3L_8463254_8463287 52.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 52.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette RI_chr4_980473_983026,noncoding_20846,R_chr4_980665_983026,R_chr4_980665_983029,R_chr4_980750_982876,R_chr4_980750_983026 chr4 + chr4_980665_983029 chr4_980665_982876;chr4_982974_983029 chr4_982877_982973 chr4_980650_980664;chr4_983030_983080 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA EDTP chr2R - chr2R_13320873_13320924;chr2R_13320861_13320924 chr2R_13320840_13320924 chr2R_13320925_13321563;chr2R_13320696_13320839 97.62 100.00 100.00 97.30 95.65 NA 100.00 97.62 94.12 NA NA 96.30 100.00 NA 91.30 100.00 NA 96.77 100.00 98.11 NA 94.12 97.62 96.30 NA NA 100.00 100.00 95.00 95.00 100.00 NA 96.00 100.00 NA 95.83 97.06 100.00 100.00 100.00 92.31 96.77 100.00 91.30 100.00 100.00 90.00 95.00 100.00 95.92 100.00 92.31 NA NA 95.83 97.06 100.00 100.00 K jcn_only_AD CG14803,CG14805 chrX + chrX_1763261_1763330 chrX_1763276_1763330 chrX_1763331_1763911;chrX_1762927_1763260 100.00 NA 100.00 96.88 100.00 100.00 100.00 100.00 100.00 NA NA 97.50 NA NA 93.10 100.00 NA NA NA 100.00 NA NA 100.00 90.91 NA 100.00 100.00 NA NA 92.59 NA NA 100.00 100.00 NA 100.00 95.45 NA 97.14 100.00 NA 97.67 NA 95.65 100.00 100.00 NA 96.43 100.00 NA NA 92.86 NA NA 100.00 NA 100.00 100.00 K intron_retention akirin,I_chr3L_7363211_7364831 chr3L + chr3L_7365620_7365680 chr3L_7365619_7365620;chr3L_7365680_7365681 chr3L_7365263_7365619;chr3L_7365681_7366121 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.37 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.81 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RhoGDI chr3L + chr3L_19921875_19923914;chr3L_19921911_19923914 chr3L_19922009_19923914 chr3L_19923915_19924114;chr3L_19921868_19921874 93.48 92.00 92.59 96.67 91.30 93.75 97.94 96.32 94.08 90.91 91.67 95.19 90.24 97.01 91.89 91.94 88.52 93.48 92.21 91.75 94.12 90.70 97.67 97.30 92.86 91.23 97.44 100.00 95.65 92.59 92.19 85.00 61.11 89.38 100.00 96.55 92.31 93.55 92.86 89.66 94.74 92.68 94.34 100.00 85.71 97.22 97.06 85.71 94.12 93.33 97.62 94.44 96.43 100.00 91.67 97.50 96.30 92.31 N cassette Aldolase,I_chr3R_22083764_22086684 chr3R - chr3R_22082030_22082654 chr3R_22082030_22082256;chr3R_22082346_22082654 chr3R_22082257_22082345 chr3R_22081992_22082029;chr3R_22082655_22082854 3.90 3.90 3.00 8.33 3.39 7.69 3.53 7.87 4.79 8.79 3.06 5.31 6.41 5.77 6.06 3.54 2.60 15.25 2.56 5.41 6.49 10.53 4.09 4.73 4.00 5.81 3.16 6.07 4.06 4.85 5.41 3.12 3.14 5.22 4.46 1.80 3.18 3.38 2.76 3.83 3.37 6.55 6.67 3.70 3.07 2.04 4.55 2.68 3.12 3.02 3.17 2.25 1.27 2.94 3.85 5.45 1.20 5.45 K jcn_only_AA RI_chrX_8468338_8469380,I_chrX_8468338_8477573,CG12065,CE_chrX_8469528_8477573 chrX + chrX_8468441_8469386;chrX_8468441_8469383 chrX_8468441_8469380 chrX_8468351_8468440;chrX_8469387_8469480 53.67 54.10 48.15 53.67 42.86 50.00 54.63 49.33 54.93 57.73 61.82 53.85 37.76 49.21 58.27 48.58 59.38 58.70 51.80 51.52 54.87 47.22 55.46 49.21 49.45 57.89 50.00 55.56 61.26 49.39 54.65 55.17 46.79 52.86 47.90 46.60 50.23 51.49 46.46 54.49 60.00 52.76 52.99 60.21 54.76 48.28 51.49 58.73 58.72 52.00 53.11 54.60 57.14 58.75 53.74 56.74 55.07 51.74 K jcn_only_AA babo chr2R + chr2R_4840535_4842238 chr2R_4840535_4840607 chr2R_4839846_4840534 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 95.24 97.26 NA 100.00 100.00 100.00 100.00 100.00 100.00 97.75 100.00 100.00 98.78 100.00 100.00 95.65 97.56 100.00 96.36 100.00 100.00 100.00 98.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 98.46 95.45 99.38 100.00 100.00 100.00 100.00 100.00 NA 95.45 NA NA 100.00 K jcn_only_AD Pk61C,I_chr3L_143454_143514 chr3L + chr3L_143218_143514 chr3L_143454_143514 chr3L_143515_143614;chr3L_142943_143217 1.43 1.79 1.75 3.54 1.59 4.17 7.69 0.00 0.00 NA 0.00 2.54 0.00 0.00 0.00 0.00 1.96 7.69 2.86 0.79 0.00 6.25 1.72 0.00 2.94 1.52 1.72 0.00 13.89 3.70 1.67 NA 0.00 1.67 2.38 0.00 4.00 0.00 11.54 1.43 3.33 0.00 0.00 2.63 0.00 4.17 0.00 0.00 0.88 6.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 K intron_retention Vha16,I_chr2R_2519645_2520499,RI_chr2R_2519646_2519840,I_chr2R_2519646_2520292,I_chr2R_2519646_2520298,I_chr2R_2519775_2520499 chr2R - chr2R_2519646_2520499 chr2R_2519645_2519646;chr2R_2520499_2520500 chr2R_2519546_2519645;chr2R_2520500_2520599 11.20 12.01 11.88 11.90 12.54 9.66 22.66 15.31 13.78 8.25 14.63 12.87 13.11 11.58 11.48 10.97 13.20 13.08 16.56 12.97 11.20 10.33 9.83 8.15 13.92 25.07 13.21 10.43 17.83 7.00 9.26 5.84 9.85 13.91 13.90 19.21 8.12 8.14 7.88 9.49 14.29 10.51 11.96 6.30 6.29 5.26 6.74 6.67 9.83 9.91 9.92 11.72 8.45 12.62 11.06 8.15 11.76 6.27 K intron_retention pnr,RI_chr3R_11852561_11855192 chr3R + chr3R_11860829_11864308 chr3R_11860828_11860829;chr3R_11864308_11864309 chr3R_11860761_11860828;chr3R_11864309_11864920 0.00 0.00 7.41 5.71 4.55 4.35 0.00 5.88 3.85 0.00 0.00 2.17 8.33 15.00 4.00 8.33 0.00 2.44 0.00 0.00 7.69 3.03 2.63 5.13 0.00 0.00 11.11 12.00 0.00 3.85 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 10.42 1.96 0.00 4.65 NA 3.77 0.00 0.00 0.00 0.00 6.12 0.00 0.00 0.00 NA 0.00 13.04 0.00 0.00 0.00 K multi_cassette CG10669,I_chr3R_21159696_21160749 chr3R - chr3R_21159696_21160749 chr3R_21159696_21159868;chr3R_21160115_21160169;chr3R_21160673_21160749 chr3R_21159869_21160114;chr3R_21160170_21160672 chr3R_21159596_21159695;chr3R_21160750_21160849 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 66.67 100.00 66.67 100.00 NA 100.00 100.00 K alternative_donor 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5987603_5991760,I_chr2R_5988662_5991760,I_chr2R_5988666_5991760,I_chr2R_5988919_5991760,I_chr2R_5988931_5991760,I_chr2R_5990647_5991760,I_chr2R_5991249_5991760,I_chr2R_5991689_5991760,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5987244_5991760;chr2R_5987237_5991760 chr2R_5987356_5991760 chr2R_5991761_5991860;chr2R_5987235_5987236 61.58 65.09 58.47 57.00 39.44 61.85 65.44 57.02 48.28 80.00 55.07 61.58 50.96 58.77 57.54 55.67 47.69 44.69 58.80 50.74 55.00 65.08 71.93 63.00 67.03 66.90 74.42 76.67 64.15 75.44 58.91 60.34 66.29 59.10 89.66 90.77 40.82 59.38 63.16 67.47 71.43 55.91 55.94 72.41 56.04 78.82 65.93 70.10 59.54 60.67 80.65 56.44 75.56 86.27 58.01 66.02 57.00 70.27 K intron_retention CG10103,noncoding_10997 chr3L - chr3L_6747908_6748046 chr3L_6747907_6747908;chr3L_6748046_6748047 chr3L_6747845_6747907;chr3L_6748047_6748104 67.95 60.00 83.33 81.82 NA 75.00 73.33 78.95 81.82 31.25 60.00 61.29 66.67 90.91 62.50 92.86 NA 72.73 69.23 75.00 54.55 88.89 75.00 73.68 28.57 NA 34.62 20.69 63.64 66.67 55.56 61.11 84.00 73.91 NA 90.00 61.11 NA 41.67 81.82 36.67 60.00 83.33 62.50 50.00 73.33 72.22 62.50 70.83 60.87 59.09 71.43 53.85 64.71 75.00 88.89 50.00 76.00 K intron_retention Karl,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11683137_11684890 chrX_11683136_11683137;chrX_11684890_11684891 chrX_11682813_11683136;chrX_11684891_11685028 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.06 0.00 0.12 0.00 0.09 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA l(1)G0196,I_chrX_21900456_21904601 chrX + chrX_21905577_21906869 chrX_21905577_21906064 chrX_21905205_21905576;chrX_21906870_21906886 100.00 100.00 100.00 100.00 100.00 98.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Rm62,I_chr3R_1827459_1827554,I_chr3R_1828444_1829394,I_chr3R_1828476_1829394 chr3R - chr3R_1827459_1829394 chr3R_1827458_1827459;chr3R_1829394_1829395 chr3R_1827359_1827458;chr3R_1829395_1829494 1.30 0.69 1.55 1.78 1.82 1.09 1.62 1.78 1.17 1.45 3.03 2.85 2.33 2.20 1.90 1.71 2.70 1.66 2.46 1.09 2.02 13.86 0.83 0.88 0.83 1.07 0.96 1.56 0.92 0.96 2.37 1.30 0.81 1.69 1.42 1.14 0.88 1.04 0.96 1.53 0.99 1.07 1.73 1.45 1.01 1.94 0.64 2.37 1.67 0.79 0.88 1.24 1.01 0.84 1.80 0.93 0.92 1.30 K intron_retention Tis11 chrX + chrX_12572090_12572366 chrX_12572089_12572090;chrX_12572366_12572367 chrX_12571770_12572089;chrX_12572367_12573736 0.00 0.00 1.09 0.82 1.32 0.00 0.00 0.00 0.50 0.00 0.00 1.31 0.00 0.00 0.00 0.00 0.00 2.50 0.00 1.24 0.00 1.15 0.00 0.97 0.00 0.00 0.00 4.55 0.00 0.00 1.28 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 3.45 0.64 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor cno,I_chr3R_999718_999986,I_chr3R_999737_999777,RI_chr3R_1002318_1003015 chr3R - chr3R_1002013_1003015 chr3R_1002318_1003015 chr3R_1003016_1003115;chr3R_999987_1002012 0.00 2.44 0.00 2.04 0.00 0.00 1.89 1.96 1.32 0.00 0.00 1.47 0.00 0.00 3.45 0.00 0.00 0.00 0.00 1.30 0.00 1.09 1.94 0.00 0.00 0.00 3.92 5.06 0.00 1.85 0.00 0.00 1.15 0.00 0.00 1.37 1.27 1.67 0.00 1.23 0.00 3.49 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 2.94 0.00 0.00 K alternative_acceptor cni,RI_chr2L_16309575_16309999,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16310624_16310690;chr2L_16310637_16310690 chr2L_16310641_16310690 chr2L_16310691_16310700;chr2L_16310441_16310623 48.78 52.27 45.59 53.85 48.21 49.21 46.55 48.00 54.19 52.00 52.00 50.91 49.02 56.92 46.91 51.69 58.33 35.71 53.61 41.58 48.78 54.55 50.98 45.16 56.25 38.89 70.97 61.11 48.28 52.17 41.43 50.00 48.15 48.18 42.42 52.17 47.73 57.78 50.85 47.46 48.48 61.06 41.79 41.03 33.33 42.50 48.57 48.15 51.88 45.00 62.75 61.70 33.33 38.46 52.13 47.62 39.13 50.00 K intron_retention CG7429 chr2L + chr2L_8041699_8041758 chr2L_8041698_8041699;chr2L_8041758_8041759 chr2L_8041309_8041698;chr2L_8041759_8041879 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 7.69 NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA K intron_retention Jupiter,I_chr3R_7418347_7445425,RE_chr3R_7419487_7429863,I_chr3R_7429934_7430307,I_chr3R_7429962_7445425,I_chr3R_7430006_7445425,RI_chr3R_7442748_7445425,RI_chr3R_7442793_7445425 chr3R - chr3R_7419489_7445425 chr3R_7419488_7419489;chr3R_7445425_7445426 chr3R_7419355_7419488;chr3R_7445426_7445525 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.08 0.00 0.00 0.16 0.09 0.00 0.00 0.24 2.31 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.45 0.18 0.09 0.00 0.00 0.00 0.00 0.27 0.00 0.18 0.00 K intron_retention Lasp,I_chr3L_16671761_16673911,R_chr3L_16672970_16673911,RI_chr3L_16674471_16704042 chr3L - chr3L_16672970_16673911 chr3L_16672969_16672970;chr3L_16673911_16673912 chr3L_16672870_16672969;chr3L_16673912_16674011 88.51 86.11 85.25 70.71 94.23 87.50 84.38 88.29 88.77 91.74 72.60 82.82 100.00 87.50 88.14 89.16 94.23 77.42 96.15 90.99 73.44 65.73 88.51 92.31 90.43 82.61 90.27 90.06 79.18 85.88 88.89 93.39 83.83 88.89 86.67 97.35 84.85 85.86 92.36 88.06 86.13 90.85 89.47 89.71 74.71 93.96 88.12 91.23 91.45 86.57 89.23 87.84 96.03 91.14 83.05 92.86 82.93 93.23 K jcn_only_AD vlc chr2R + chr2R_1589953_1590371;chr2R_1589894_1590371;chr2R_1589799_1590371;chr2R_1589805_1590371;chr2R_1590318_1590371;chr2R_1589807_1590371;chr2R_1589722_1590371;chr2R_1589693_1590371 chr2R_1590294_1590371 chr2R_1590372_1590451;chr2R_1589612_1589692 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 4.76 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 1.33 0.00 3.33 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 1.41 0.00 1.85 0.00 0.00 0.00 0.00 0.00 1.82 1.75 0.00 0.00 0.00 0.00 0.00 K intron_retention Rtnl1,I_chr2L_4994995_5006383,RE_chr2L_4994997_5008180,I_chr2L_4999312_5000248,I_chr2L_4999386_4999670,I_chr2L_4999386_5000201,I_chr2L_5027222_5028118 chr2L - chr2L_4999340_5000248 chr2L_4999339_4999340;chr2L_5000248_5000249 chr2L_4999286_4999339;chr2L_5000249_5000301 100.00 NA 100.00 94.12 100.00 100.00 95.45 96.30 96.88 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 94.12 NA 100.00 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 90.00 NA 100.00 100.00 100.00 93.55 K alternative_donor RpS13,RI_chr2L_8364126_8364208,I_chr2L_8364128_8364191 chr2L - chr2L_8364126_8364208 chr2L_8364126_8364187 chr2L_8364028_8364125;chr2L_8364209_8364291 99.97 99.97 99.89 99.92 100.00 99.96 99.98 99.99 99.97 100.00 99.97 99.94 99.98 99.98 99.42 99.99 100.00 99.98 99.94 99.97 99.98 100.00 99.97 100.00 99.91 99.96 99.88 99.91 100.00 100.00 99.94 99.97 99.91 99.93 99.97 99.97 100.00 99.96 99.98 99.94 100.00 99.99 99.97 100.00 99.97 99.88 99.98 99.98 99.97 99.97 99.98 99.94 99.98 99.98 99.97 99.98 99.94 99.95 N cassette CG1578,RI_chrX_11709573_11710335,I_chrX_11710380_11710454 chrX - chrX_11707501_11709202 chrX_11707501_11708729;chrX_11708915_11709202 chrX_11708730_11708914 chrX_11707321_11707500;chrX_11709203_11709572 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Sbp2,RI_chr3L_8297501_8297847 chr3L + chr3L_8298069_8298121 chr3L_8298068_8298069;chr3L_8298121_8298122 chr3L_8297848_8298068;chr3L_8298122_8298436 0.00 0.00 0.00 8.51 0.00 0.00 0.00 6.38 1.85 0.00 0.00 1.75 3.45 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.90 11.43 0.00 3.12 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 5.00 8.11 6.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 10.87 K intron_retention Sos chr2L + chr2L_13819270_13819334 chr2L_13819269_13819270;chr2L_13819334_13819335 chr2L_13818636_13819269;chr2L_13819335_13820184 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_donor None chrU - chrU_4028377_4028681 chrU_4028377_4028479 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 71.88 100.00 K alternative_donor Moe,I_chrX_8774434_8775874,I_chrX_8774434_8791759 chrX - chrX_8774434_8775660 chrX_8774434_8775292 chrX_8774334_8774433;chrX_8775661_8775667 41.67 NA NA 28.57 NA NA 33.33 20.00 41.67 NA 46.15 NA NA NA NA NA NA NA NA 50.00 50.00 NA NA NA NA NA NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 44.44 NA NA NA NA NA NA NA NA NA K jcn_only_AD Ca-P60A,RI_chr2R_19820338_19820541,I_chr2R_19820338_19821424,CEI_chr2R_19820338_19821830,I_chr2R_19820338_19823289 chr2R - chr2R_19820338_19820817;chr2R_19820338_19820955;chr2R_19820338_19820765 chr2R_19820338_19820781 chr2R_19820238_19820337;chr2R_19820956_19820969 88.45 89.39 88.45 87.24 91.62 85.71 87.70 87.53 90.35 86.17 90.81 89.89 82.57 89.29 91.04 85.58 89.01 89.01 89.23 89.05 89.39 87.29 84.21 90.36 91.67 88.65 81.41 82.14 82.54 90.21 92.31 82.24 87.47 86.96 85.21 89.76 90.43 85.22 90.11 88.45 91.81 88.87 90.40 91.32 86.52 86.32 87.94 86.42 86.18 88.17 86.29 82.93 88.81 92.50 87.71 88.14 89.31 91.73 N alternative_donor noncoding_11987 chr3L + chr3L_11361209_11362158 chr3L_11361655_11362158 chr3L_11362159_11362196;chr3L_11361206_11361208 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 75.00 NA NA NA NA NA NA 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 71.43 75.00 85.71 NA NA NA 100.00 NA NA NA 100.00 K intron_retention fwd,RI_chr3L_319514_319746 chr3L - chr3L_314318_318990 chr3L_314317_314318;chr3L_318990_318991 chr3L_313024_314317;chr3L_318991_319513 0.00 NA 0.00 19.05 NA NA 0.00 6.25 7.41 NA NA 6.67 NA NA NA 0.00 NA NA 7.69 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA 4.35 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K intron_retention CG7358,I_chrX_18784661_18784773 chrX - chrX_18784515_18784773 chrX_18784514_18784515;chrX_18784773_18784774 chrX_18784488_18784514;chrX_18784774_18784782 12.50 11.54 12.50 14.29 25.00 0.00 23.53 6.67 13.64 6.67 17.65 16.13 17.65 16.67 17.86 9.09 13.33 9.09 12.50 12.77 15.38 24.24 6.15 16.67 19.05 10.53 11.43 13.79 21.05 13.51 36.84 NA 6.67 14.29 12.50 5.26 7.25 8.51 11.36 15.62 14.29 14.29 10.00 17.39 0.00 8.33 12.50 5.00 11.36 10.87 20.69 9.68 5.56 9.09 9.09 6.06 9.38 13.33 K intron_retention betaTub97EF chr3R - chr3R_23792924_23792990 chr3R_23792923_23792924;chr3R_23792990_23792991 chr3R_23792730_23792923;chr3R_23792991_23793313 0.84 0.00 0.00 5.31 0.00 0.99 0.00 0.00 0.85 0.00 0.00 1.23 1.75 2.17 1.72 0.56 0.00 0.96 0.00 0.00 0.00 0.48 0.87 0.90 0.82 1.15 1.48 4.10 1.04 1.60 1.18 0.92 1.01 1.85 1.20 0.61 0.61 0.00 0.73 0.61 0.00 1.18 2.78 0.00 1.53 0.47 0.90 0.29 1.18 0.93 0.84 0.00 0.00 0.00 1.38 0.00 0.72 0.88 K jcn_only_AD nmd,CG5390 chr2L - chr2L_10303599_10303782 chr2L_10303599_10303654 chr2L_10302457_10303598;chr2L_10303783_10303945 98.48 98.98 100.00 98.48 100.00 99.22 99.47 99.51 99.59 91.67 98.00 99.54 99.27 99.12 98.79 99.30 100.00 98.10 99.37 99.18 97.98 98.63 95.73 99.12 94.67 98.17 98.70 97.75 97.50 97.73 97.39 96.49 97.47 99.11 97.50 89.23 99.16 98.72 97.56 95.68 96.40 98.81 100.00 97.59 95.61 97.86 98.08 97.32 99.56 97.85 96.21 98.95 97.37 95.71 99.36 100.00 99.22 97.33 N multi_cassette unc-13,I_chr4_897821_902468,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_897821_903242 chr4_897821_899476;chr4_899619_902468;chr4_902576_903242 chr4_899477_899618;chr4_902469_902575 chr4_897721_897820;chr4_903243_903342 25.39 NA NA NA NA NA 13.33 NA 28.57 NA NA 22.22 NA NA NA NA NA NA NA 20.00 NA 10.53 NA NA NA NA NA NA NA NA 30.77 NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K mutually_exclusive spz chr3R - chr3R_22892388_22892843,chr3R_22892922_22894865;chr3R_22892388_22893079,chr3R_22893218_22894865 chr3R_22892388_22892450,chr3R_22892607_22894865 chr3R_22892844_22892921;chr3R_22893080_22893217 chr3R_22892451_22892606 chr3R_22892330_22892387;chr3R_22894866_22895053 48.23 52.86 36.54 36.52 50.94 42.62 72.86 35.04 46.71 61.76 32.14 53.57 31.15 48.08 54.65 36.00 36.17 36.17 50.59 30.43 37.25 64.91 55.26 50.00 56.82 55.07 38.10 45.45 71.15 53.85 42.65 50.00 46.43 40.20 52.00 35.48 55.07 59.52 57.69 58.33 48.28 48.23 47.37 75.00 64.37 48.08 47.37 55.91 45.04 47.37 42.37 51.79 60.56 53.66 47.50 51.52 44.44 39.39 K alternative_acceptor Smc5,I_chr3L_21566234_21566275 chr3L + chr3L_21566011_21566102 chr3L_21566011_21566075 chr3L_21565786_21566010;chr3L_21566103_21566233 94.44 94.44 94.12 87.50 78.57 92.31 100.00 89.19 90.48 100.00 86.67 96.55 100.00 92.31 93.75 100.00 100.00 91.67 90.91 96.67 92.31 95.00 93.75 87.50 90.91 100.00 100.00 100.00 91.67 90.91 94.44 94.44 92.86 100.00 100.00 83.33 96.43 91.67 95.24 92.31 95.45 96.88 91.67 100.00 100.00 100.00 100.00 95.45 94.44 95.83 94.12 100.00 92.86 100.00 84.21 95.65 95.83 96.97 N jcn_only_AA CG13807 chr3L + chr3L_2263295_2263374 chr3L_2263295_2263355 chr3L_2262781_2263294;chr3L_2263375_2263666 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 77.03 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG6665,I_chr2R_12845291_12845765 chr2R + chr2R_12845698_12845765 chr2R_12845697_12845698;chr2R_12845765_12845766 chr2R_12845007_12845697;chr2R_12845766_12845865 0.00 0.00 0.00 2.38 0.00 0.00 0.00 13.16 5.71 0.00 NA 0.00 0.00 0.00 0.00 9.09 0.00 8.33 0.00 2.78 10.00 0.00 0.00 0.00 11.76 0.00 0.00 7.69 0.00 0.00 8.33 0.00 0.00 0.00 NA 8.00 3.45 0.00 10.53 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 4.00 5.56 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention E(bx),I_chr3L_236428_236553,RI_chr3L_236428_236858,RI_chr3L_236451_239054,RI_chr3L_236508_236862,I_chr3L_239004_239054,I_chr3L_239186_239264,I_chr3L_246324_246699 chr3L - chr3L_236428_239054 chr3L_236427_236428;chr3L_239054_239055 chr3L_236408_236427;chr3L_239055_239154 35.44 32.00 25.64 34.33 37.04 41.94 52.63 35.44 39.62 33.33 34.78 38.46 62.16 45.45 28.57 44.07 47.06 35.29 37.25 26.37 35.00 53.85 28.12 30.23 36.67 46.43 38.78 31.03 47.83 25.81 48.48 20.00 21.95 34.62 36.84 65.52 25.53 44.00 31.43 22.22 45.00 40.32 48.48 30.56 31.82 46.88 48.57 28.57 40.24 51.43 38.98 31.25 32.00 29.17 40.91 33.33 34.62 28.21 K intron_retention CG4091,RI_chr2R_19589178_19589633 chr2R - chr2R_19587764_19587820 chr2R_19587763_19587764;chr2R_19587820_19587821 chr2R_19586437_19587763;chr2R_19587821_19588113 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 NA 0.00 3.45 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 12.00 NA 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.44 0.00 NA 0.00 K intron_retention Arf79F,I_chr3L_22863166_22863946,I_chr3L_22863166_22864419,RI_chr3L_22863251_22863389,RI_chr3L_22863251_22863952,I_chr3L_22863251_22864009,I_chr3L_22863251_22864188,I_chr3L_22863251_22864501,I_chr3L_22863251_22864629,RI_chr3L_22863251_22864763,I_chr3L_22863251_22864866,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22863166_22865023 chr3L_22863165_22863166;chr3L_22865023_22865024 chr3L_22863151_22863165;chr3L_22865024_22865147 98.31 97.64 98.09 97.78 96.80 98.22 98.97 97.20 98.57 99.03 97.96 98.43 98.49 98.90 97.87 97.24 98.82 96.05 98.61 98.03 97.55 99.29 98.42 97.49 99.50 99.50 97.81 98.51 99.34 97.87 96.71 98.76 99.58 97.93 97.87 97.71 99.44 97.37 98.68 96.14 97.69 97.58 97.90 98.41 98.67 96.98 98.61 98.99 98.92 99.49 98.83 97.25 97.66 96.53 98.46 99.05 98.31 99.61 K alternative_donor CG14005,I_chr2L_5801609_5801677 chr2L - chr2L_5801609_5801677 chr2L_5801609_5801671 chr2L_5801509_5801608;chr2L_5801678_5801777 89.44 NA NA 100.00 NA 77.78 100.00 90.91 100.00 NA NA 100.00 NA NA NA 87.50 NA NA NA 100.00 NA 75.00 91.67 84.62 NA NA 87.50 NA NA 81.82 90.00 88.89 91.67 92.86 90.91 81.82 93.75 90.00 94.12 92.86 NA 82.35 NA 100.00 81.82 84.62 NA 71.43 76.92 90.91 81.82 100.00 100.00 87.50 88.89 88.89 87.50 85.71 K intron_retention CG14199 chrX - chrX_19388870_19388932 chrX_19388869_19388870;chrX_19388932_19388933 chrX_19388760_19388869;chrX_19388933_19389086 7.30 4.17 9.09 7.95 2.27 2.90 6.49 7.55 6.19 10.53 7.89 7.30 0.00 4.26 8.33 3.26 10.00 7.69 4.35 7.69 3.51 12.90 9.09 7.23 15.38 16.39 22.03 18.92 16.95 6.82 4.65 8.93 8.06 7.14 8.89 46.15 8.54 8.33 6.10 7.00 14.29 6.15 6.90 5.36 7.55 8.99 5.63 4.35 5.76 7.61 10.64 5.00 2.00 9.80 3.70 6.98 3.54 6.74 K intron_retention RhoGAP71E,I_chr3L_15583097_15589765 chr3L + chr3L_15595616_15597935 chr3L_15595615_15595616;chr3L_15597935_15597936 chr3L_15594743_15595615;chr3L_15597936_15597984 87.50 76.47 93.33 100.00 81.82 92.31 95.45 95.24 88.00 90.00 90.00 87.50 93.75 93.75 92.31 100.00 83.33 84.62 83.33 96.97 90.91 88.24 87.50 83.33 90.91 NA 100.00 89.66 81.82 83.33 88.24 77.78 75.00 80.95 85.71 64.29 75.00 77.78 85.71 95.65 82.35 84.00 100.00 78.95 84.62 94.44 83.33 86.49 89.66 87.50 83.33 87.50 78.57 93.33 100.00 92.31 100.00 85.71 K jcn_only_AA mld chr3R + chr3R_20445827_20445894 chr3R_20445827_20445891 chr3R_20441773_20445826;chr3R_20445895_20445957 100.00 100.00 NA 100.00 95.83 NA 100.00 100.00 100.00 100.00 NA 97.30 100.00 NA NA 96.15 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA NA 95.45 NA NA 100.00 97.50 NA NA 97.56 100.00 100.00 100.00 NA 95.83 95.45 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 90.91 NA 97.73 95.65 NA K intron_retention Tm1 chr3R + chr3R_11115162_11120834 chr3R_11115161_11115162;chr3R_11120834_11120835 chr3R_11114826_11115161;chr3R_11120835_11120968 10.77 10.53 10.81 27.59 12.50 14.29 24.05 11.84 14.56 16.67 16.36 14.71 11.76 19.61 14.49 16.90 11.90 15.09 17.65 12.61 10.20 10.71 4.44 7.25 9.30 12.82 22.00 25.93 8.00 8.93 10.61 4.44 5.38 14.00 8.70 16.18 8.96 10.77 9.41 8.43 4.76 10.62 13.04 8.00 2.99 4.26 5.48 7.46 11.86 7.14 15.38 17.95 5.48 5.36 12.68 8.20 4.59 5.11 K intron_retention mfrn,I_chr3R_23770737_23770817,I_chr3R_23771063_23771153,I_chr3R_23771063_23772599 chr3R - chr3R_23770924_23770973 chr3R_23770923_23770924;chr3R_23770973_23770974 chr3R_23770799_23770923;chr3R_23770974_23771062 1.30 0.00 2.99 7.35 0.00 0.00 2.30 0.00 3.25 0.00 0.00 1.01 0.00 0.00 1.75 0.00 0.00 0.00 0.00 1.65 0.00 2.44 5.26 1.32 6.35 8.89 12.36 9.80 16.13 1.39 0.88 0.00 1.75 0.00 2.86 14.10 1.10 2.60 5.05 4.21 6.41 0.96 0.00 2.74 1.15 2.94 1.69 1.30 1.92 3.08 0.92 0.00 3.85 0.00 0.00 0.00 1.23 1.11 K jcn_only_AD CG7656,I_chr3L_15580697_15581083 chr3L - chr3L_15580697_15581265;chr3L_15580697_15581154 chr3L_15580697_15581083 chr3L_15580597_15580696;chr3L_15581266_15581315 0.00 0.00 0.00 3.03 0.00 0.00 0.00 2.70 1.53 2.22 1.54 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.58 0.00 0.00 2.17 0.00 4.00 0.00 0.00 1.56 3.03 3.12 2.13 0.00 4.29 1.92 0.00 0.00 0.00 1.37 0.00 0.81 5.88 0.80 0.00 0.00 1.43 0.00 0.86 0.00 0.98 1.47 1.06 0.00 1.20 1.45 0.00 0.00 0.00 0.00 K alternative_acceptor lkb1 chr3R + chr3R_9504789_9504872;chr3R_9504789_9504847 chr3R_9504789_9504862 chr3R_9504472_9504788;chr3R_9504873_9505152 40.00 47.83 31.25 29.03 36.36 41.67 45.83 46.43 28.57 37.50 40.00 40.62 37.50 46.67 42.86 37.50 40.00 25.00 33.33 40.00 11.11 30.00 NA 50.00 50.00 45.00 40.00 33.33 42.11 42.86 31.25 41.18 40.00 46.15 30.77 NA 31.25 40.00 42.11 32.26 52.94 38.46 NA 50.00 48.00 32.43 30.43 38.10 45.71 45.00 40.00 NA NA 32.00 NA 33.33 38.89 33.33 K intron_retention CG2224 chr3R - chr3R_26282947_26283013 chr3R_26282946_26282947;chr3R_26283013_26283014 chr3R_26282676_26282946;chr3R_26283014_26283126 0.00 0.00 0.00 7.41 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.70 NA NA 0.00 0.00 NA 5.56 0.00 0.00 0.00 2.78 0.00 0.00 NA 0.00 17.65 12.50 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 NA 0.00 1.61 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 13.79 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.17 0.00 K intron_retention Ntf-2,I_chrX_20906749_20909772 chrX + chrX_20907498_20907565 chrX_20907497_20907498;chrX_20907565_20907566 chrX_20907429_20907497;chrX_20907566_20907664 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 1.52 0.00 1.39 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 K intron_retention Dgp-1,I_chr2R_14058825_14059758,I_chr2R_14058954_14059942 chr2R - chr2R_14058163_14058222 chr2R_14058162_14058163;chr2R_14058222_14058223 chr2R_14057820_14058162;chr2R_14058223_14058403 0.65 0.64 0.00 0.97 0.00 0.00 0.84 0.65 1.11 1.17 0.46 0.71 1.09 1.06 2.07 0.90 1.10 0.99 0.00 0.47 0.44 0.74 1.12 1.27 1.25 0.00 2.09 3.62 0.82 0.50 0.00 0.45 0.90 0.58 1.03 0.68 0.60 0.83 0.62 1.00 1.96 1.18 0.00 0.62 0.44 0.28 0.68 0.37 0.47 0.63 0.92 1.00 0.00 0.27 0.00 0.21 0.00 0.57 K intron_retention Plip chr3R + chr3R_19585018_19585079 chr3R_19585017_19585018;chr3R_19585079_19585080 chr3R_19584949_19585017;chr3R_19585080_19585146 0.00 0.00 0.00 6.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2395659 chrX_2387584_2387709;chrX_2388437_2388670 chrX_2387149_2387248;chrX_2395660_2395759 2.22 3.77 2.90 0.97 2.17 1.54 1.61 2.21 2.31 3.85 0.00 5.32 1.75 3.39 2.20 1.54 3.03 2.86 2.41 1.96 2.94 2.27 2.22 2.27 2.94 1.69 1.45 0.00 2.70 1.67 1.79 5.56 2.00 2.26 2.22 3.23 1.12 2.63 2.47 2.91 6.25 2.16 1.61 4.05 7.14 2.94 NA 3.03 1.68 0.00 2.04 3.03 2.08 NA 3.00 0.00 0.00 2.04 K alternative_donor skpA chrX + chrX_550433_551131;chrX_550498_551131;chrX_550818_551131;chrX_550638_551131;chrX_550774_551131;chrX_550654_551131 chrX_550523_551131 chrX_551132_551937;chrX_550426_550432 51.11 40.30 46.55 45.28 47.17 47.17 46.39 42.34 40.57 57.58 50.00 48.84 47.06 40.35 53.45 50.00 40.00 36.99 42.86 53.28 48.15 73.53 55.07 43.06 44.44 43.66 70.37 70.21 68.85 60.00 59.09 64.44 61.67 51.11 45.16 74.36 63.64 53.57 55.74 70.93 65.91 45.13 47.73 61.02 64.29 63.49 55.56 65.31 41.67 50.00 53.33 50.85 63.04 51.52 50.00 55.88 47.76 61.36 K jcn_only_AA MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17399683_17403392;chr2R_17399683_17403481;chr2R_17399683_17401733 chr2R_17399683_17401713 chr2R_17399598_17399682;chr2R_17403482_17403550 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 98.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 100.00 100.00 100.00 98.28 100.00 100.00 100.00 99.05 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 98.70 98.39 99.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor RpL15 chr3LHet + chr3LHet_2397820_2398049;chr3LHet_2397820_2398143 chr3LHet_2397820_2398127 chr3LHet_2397802_2397819;chr3LHet_2398144_2398454 80.45 80.45 90.80 82.24 80.44 85.95 69.05 87.70 76.91 63.03 82.52 76.44 76.40 74.62 90.44 68.88 85.60 89.49 88.37 88.59 80.45 74.15 70.59 68.26 67.54 87.43 70.86 79.04 81.97 80.61 71.22 86.11 79.70 87.73 77.86 80.21 63.98 65.22 65.66 91.73 82.53 86.57 85.90 91.90 88.94 85.27 64.59 87.66 86.13 62.00 73.53 66.01 95.46 72.50 90.68 68.72 67.64 91.65 K multi_cassette CG12753,I_chr3R_12266126_12266741,Pak3 chr3R - chr3R_12266126_12266741 chr3R_12266126_12266186;chr3R_12266274_12266329;chr3R_12266473_12266529;chr3R_12266679_12266741 chr3R_12266187_12266273;chr3R_12266330_12266472;chr3R_12266530_12266678 chr3R_12266026_12266125;chr3R_12266742_12266841 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 K alternative_donor CG31955,RI_chr2L_3712446_3712767 chr2L - chr2L_3712446_3712767 chr2L_3712446_3712497 chr2L_3712346_3712445;chr2L_3712768_3712862 88.73 80.00 87.95 91.76 92.59 88.73 92.13 89.10 89.11 80.00 92.86 90.08 86.21 89.02 90.00 94.81 91.04 90.62 91.75 85.13 89.09 96.88 76.00 77.88 74.42 91.67 92.06 95.65 85.29 84.85 87.91 86.76 92.86 94.89 85.94 91.43 71.26 65.57 70.93 86.14 88.37 91.03 88.75 66.67 81.93 89.40 82.81 89.04 91.67 72.73 82.11 78.21 78.26 77.57 90.43 69.53 77.14 91.57 K alternative_donor CG1275,I_chr3L_2261108_2261339 chr3L - chr3L_2253272_2253328 chr3L_2253272_2253324 chr3L_2252785_2253271;chr3L_2253329_2253692 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.59 0.83 0.27 0.00 1.02 0.00 0.00 0.76 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.13 K intron_retention CG7011 chr3L - chr3L_15154473_15155599 chr3L_15154472_15154473;chr3L_15155599_15155600 chr3L_15154265_15154472;chr3L_15155600_15155620 0.00 0.00 3.85 2.17 0.00 0.00 6.98 0.00 3.70 NA 0.00 3.23 0.00 0.00 0.00 5.41 0.00 0.00 0.00 2.70 0.00 2.13 0.00 0.00 0.00 0.00 0.00 13.51 0.00 0.00 0.00 0.00 0.00 6.25 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 NA 2.70 0.00 4.76 0.00 0.00 0.00 0.00 2.13 0.00 6.67 K cassette ttv,I_chr2R_10450891_10470424 chr2R + chr2R_10450891_10470424 chr2R_10450891_10452458;chr2R_10452579_10470424 chr2R_10452459_10452578 chr2R_10450791_10450890;chr2R_10470425_10470524 98.63 100.00 98.31 100.00 100.00 100.00 94.23 98.63 99.07 97.83 93.75 100.00 100.00 100.00 98.57 98.31 100.00 97.50 100.00 100.00 96.08 92.86 98.94 98.59 97.67 97.96 98.90 100.00 90.24 95.31 98.08 97.06 98.31 100.00 97.30 100.00 98.90 98.53 98.91 100.00 96.55 99.11 100.00 100.00 97.78 100.00 97.92 98.46 99.07 97.62 98.65 97.67 100.00 100.00 98.44 100.00 97.44 97.62 K intron_retention Lsd-1,CG10375 chr3R + chr3R_19591789_19591851 chr3R_19591788_19591789;chr3R_19591851_19591852 chr3R_19591598_19591788;chr3R_19591852_19592029 19.23 NA NA NA NA NA 23.08 NA 15.38 23.08 NA NA NA NA NA NA NA 50.00 NA 35.71 NA NA NA NA NA NA NA NA NA NA 0.00 23.08 NA NA NA NA NA NA NA 25.00 NA 25.00 NA NA 6.67 7.14 NA 12.50 13.33 NA NA NA NA NA NA NA NA 13.33 K alternative_acceptor sdt,E_chrX_8118081_8119115,C_chrX_8118081_8119117,I_chrX_8131684_8131842 chrX + chrX_8118081_8119111 chrX_8118081_8118817 chrX_8117989_8118080;chrX_8119112_8119214 4.88 2.86 0.00 12.20 13.64 11.11 40.00 4.76 11.54 0.00 NA 3.77 NA 16.67 8.00 6.67 NA NA 14.29 9.80 NA 4.65 3.03 0.00 3.45 19.05 3.85 NA 4.76 5.26 17.65 9.09 2.17 21.05 4.55 3.23 3.57 0.00 2.08 0.00 11.76 6.82 9.09 2.94 4.35 6.67 NA 7.84 8.57 4.55 12.50 3.85 0.00 NA 6.67 5.00 NA 4.26 N cassette 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5992573_5994971 chr2R_5992573_5993206;chr2R_5993331_5994971 chr2R_5993207_5993330 chr2R_5992473_5992572;chr2R_5994972_5995071 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.59 100.00 100.00 100.00 100.00 100.00 100.00 97.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention bip2,RI_chr4_481674_487126,RI_chr4_483128_487126,RI_chr4_486609_487126 chr4 - chr4_485367_485422 chr4_485366_485367;chr4_485422_485423 chr4_485355_485366;chr4_485423_485854 7.79 NA NA NA NA NA 7.89 15.38 8.51 NA NA 0.00 NA 0.00 6.67 16.67 0.00 NA 9.09 7.69 0.00 NA NA NA NA NA NA NA 30.77 NA 17.65 NA NA 5.71 NA NA NA NA NA 25.00 NA 6.90 14.29 11.76 NA NA NA 5.00 0.00 NA NA NA NA NA NA NA NA NA K alternative_donor kar,I_chr3R_8510245_8510617,I_chr3R_8510258_8513437,I_chr3R_8514177_8514930 chr3R - chr3R_8510245_8510617;chr3R_8510245_8513437 chr3R_8510245_8510655 chr3R_8510234_8510244;chr3R_8513438_8513461 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 3.57 0.00 0.00 NA NA NA NA 0.00 NA 20.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 33.33 NA NA 0.00 0.00 NA 0.00 0.00 0.00 20.00 NA NA NA NA NA NA 0.00 K alternative_last_exon nonA,I_chrX_16256088_16259237,I_chrX_16265109_16265346 chrX + chrX_16259676_16265346 chrX_16259676_16260936 chrX_16265347_16265596 chrX_16260937_16262659 chrX_16259620_16259675 71.43 73.68 75.00 78.79 88.89 73.33 75.00 83.72 78.26 71.43 72.73 75.68 68.75 77.27 82.35 69.57 76.47 90.00 71.43 85.11 61.54 63.64 65.22 76.47 80.00 58.33 70.00 72.73 63.64 66.67 64.00 64.29 56.25 75.56 87.50 75.00 69.23 80.00 71.43 64.52 42.11 77.50 75.00 56.25 50.00 63.33 66.67 62.07 71.15 69.57 71.43 78.57 66.67 58.82 68.00 68.18 77.78 50.00 K multi_cassette spen,I_chr2L_187184_187481,I_chr2L_200676_200752 chr2L + chr2L_163002_183760 chr2L_163002_164158;chr2L_164235_175360;chr2L_175448_183760 chr2L_164159_164234;chr2L_175361_175447 chr2L_162988_163001;chr2L_183761_185082 44.44 NA NA 37.50 60.00 NA 55.56 44.44 36.84 NA NA 55.56 NA 25.00 50.00 50.00 42.86 NA NA 57.14 NA 85.71 33.33 NA NA NA NA NA NA 42.86 NA NA NA 38.46 NA 42.86 80.00 NA NA NA NA 50.00 42.86 NA NA NA NA NA 42.86 NA 60.00 NA NA NA NA NA NA NA K alternative_donor MED21 chr3LHet - chr3LHet_601181_601357 chr3LHet_601181_601284 chr3LHet_601118_601180;chr3LHet_601358_601426 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 85.71 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA N jcn_only_AA ras chrX + chrX_10640260_10640453 chrX_10640260_10640321 chrX_10640109_10640259;chrX_10640454_10641105 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N cassette CG1513,I_chr2R_5778649_5778739 chr2R - chr2R_5776630_5778739 chr2R_5776630_5777111;chr2R_5777241_5778739 chr2R_5777112_5777240 chr2R_5776393_5776629;chr2R_5778740_5778839 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.01 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.09 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG31216 chr3R + chr3R_15497466_15512851 chr3R_15497465_15497466;chr3R_15512851_15512852 chr3R_15497309_15497465;chr3R_15512852_15513019 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 2.25 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 14.29 0.00 0.00 0.00 9.52 0.00 0.00 0.00 0.00 0.00 8.33 0.00 2.86 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 3.33 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 K cassette cora,I_chr2R_15129291_15129988 chr2R + chr2R_15124569_15125656 chr2R_15124569_15124844;chr2R_15124947_15125656 chr2R_15124845_15124946 chr2R_15124447_15124568;chr2R_15125657_15125819 0.72 0.67 0.00 0.00 0.00 0.82 1.11 0.78 0.52 0.00 1.18 0.99 0.00 1.32 1.35 1.05 0.87 0.57 0.00 0.51 1.45 0.34 0.72 0.40 2.05 0.67 0.41 0.67 1.66 1.32 1.18 1.98 0.77 0.50 0.61 1.36 0.66 1.16 0.82 0.25 0.00 0.30 0.85 0.55 1.03 0.00 1.07 1.00 1.00 0.43 0.39 1.27 1.79 0.00 0.82 0.71 0.58 1.12 K intron_retention CG5991 chr3R + chr3R_19876703_19877411 chr3R_19876702_19876703;chr3R_19877411_19877412 chr3R_19876688_19876702;chr3R_19877412_19877477 10.53 NA NA 25.00 NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA 11.76 NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA 14.29 11.76 NA NA NA NA NA 10.53 NA 9.09 NA NA NA NA NA NA 8.33 NA NA NA NA NA NA NA NA NA K intron_retention CG11033,I_chr3R_4882567_4883651 chr3R + chr3R_4883813_4884051 chr3R_4883812_4883813;chr3R_4884051_4884052 chr3R_4883652_4883812;chr3R_4884052_4885430 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Syx7,I_chr3L_21439901_21439962 chr3L + chr3L_21439476_21439542 chr3L_21439476_21439523 chr3L_21439298_21439475;chr3L_21439543_21439612 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.72 0.00 0.81 0.00 0.00 0.46 0.00 0.00 0.76 0.57 0.00 0.55 0.57 0.00 0.70 1.22 0.00 1.49 0.81 0.00 0.00 0.00 K alternative_donor Rab7 chr3R + chr3R_19818999_19819667 chr3R_19819052_19819667 chr3R_19819668_19819903;chr3R_19818930_19818998 90.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 87.50 NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA K intron_retention mld chr3R + chr3R_20446836_20448643 chr3R_20446835_20446836;chr3R_20448643_20448644 chr3R_20446101_20446835;chr3R_20448644_20449325 0.00 0.00 0.00 0.00 0.00 3.23 0.00 2.22 3.08 0.00 0.00 3.28 0.00 0.00 2.78 0.00 0.00 0.00 2.38 1.82 NA 0.00 2.22 2.22 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 3.39 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor F_chr3R_7396835_7396923,wkd chr3R + chr3R_7409279_7409422 chr3R_7409279_7409409 chr3R_7409036_7409278;chr3R_7409423_7409787 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 2.33 0.00 0.00 2.17 0.00 1.92 2.50 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 1.19 0.00 0.00 0.00 0.00 2.78 0.00 1.25 0.00 2.04 0.00 0.00 0.00 1.49 0.00 2.70 0.00 K alternative_donor osa,I_chr3R_13542657_13542834,I_chr3R_13542657_13543500,I_chr3R_13542657_13543662,I_chr3R_13542657_13543668,I_chr3R_13543730_13543786 chr3R - chr3R_13542657_13543968;chr3R_13542657_13543500;chr3R_13542657_13542834;chr3R_13542657_13543668;chr3R_13542657_13543677 chr3R_13542657_13543662 chr3R_13542557_13542656;chr3R_13543969_13544017 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.91 0.00 1.89 0.00 0.00 0.00 0.00 1.47 0.99 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 1.75 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.81 1.89 0.00 0.00 1.89 0.00 0.00 0.00 1.63 0.00 0.00 4.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 K intron_retention armi,I_chr3L_3466623_3467559 chr3L + chr3L_3462300_3462357 chr3L_3462299_3462300;chr3L_3462357_3462358 chr3L_3462127_3462299;chr3L_3462358_3462784 100.00 97.44 100.00 100.00 100.00 100.00 100.00 98.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG4877 chr3L + chr3L_16379595_16379772 chr3L_16379594_16379595;chr3L_16379772_16379773 chr3L_16379486_16379594;chr3L_16379773_16380052 100.00 91.67 90.00 94.12 NA 100.00 100.00 92.86 95.83 NA NA 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 NA 100.00 92.31 100.00 90.00 100.00 100.00 NA 88.89 100.00 NA NA 100.00 88.89 NA 100.00 NA 90.00 100.00 NA 100.00 100.00 100.00 NA 90.00 87.50 NA 100.00 NA 100.00 90.91 NA NA 100.00 NA NA NA K jcn_only_AA Rpp30,I_chr2L_258887_271628 chr2L - chr2L_251442_251526 chr2L_251465_251526 chr2L_251527_251593;chr2L_251376_251441 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 94.12 100.00 K jcn_only_AD Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3295244;chr2R_3294566_3294634;chr2R_3294566_3294636;chr2R_3294566_3294638;chr2R_3294566_3295280;chr2R_3294566_3294642;chr2R_3294566_3294714 chr2R_3294566_3295176 chr2R_3294491_3294565;chr2R_3295281_3295302 2.94 0.00 3.12 3.85 NA 0.00 0.00 0.00 3.66 NA 3.03 3.70 8.00 4.76 7.69 3.45 0.00 10.00 0.00 4.48 0.00 4.00 2.50 6.45 3.12 3.70 4.35 0.00 3.12 0.00 0.00 6.67 0.00 0.00 NA NA 6.98 0.00 2.44 3.64 0.00 1.89 0.00 3.12 0.00 2.38 12.00 2.38 4.48 0.00 3.70 0.00 2.86 NA 0.00 0.00 4.35 8.93 K cassette lap,I_chr3R_3017854_3019314 chr3R + chr3R_3019411_3024049 chr3R_3019411_3019919;chr3R_3020181_3024049 chr3R_3019920_3020180 chr3R_3019315_3019410;chr3R_3024050_3024362 92.12 100.00 NA 100.00 NA NA 87.50 87.50 90.91 NA 85.71 93.33 60.00 83.33 NA 100.00 NA NA 100.00 100.00 NA NA 100.00 75.00 NA NA NA 85.71 80.00 NA NA NA NA 100.00 NA NA 80.00 NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA 80.00 NA NA NA 87.50 NA NA NA K alternative_donor CG7845 chr2R - chr2R_1963620_1963707 chr2R_1963620_1963675 chr2R_1962569_1963619;chr2R_1963708_1963754 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 95.00 100.00 96.43 100.00 100.00 100.00 95.65 94.74 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 96.55 100.00 100.00 100.00 96.67 100.00 100.00 96.97 100.00 100.00 100.00 100.00 98.28 K intron_retention Uhg3,E_chr2L_20647810_20648188,CG2611 chr2L + chr2L_20650461_20650536 chr2L_20650460_20650461;chr2L_20650536_20650537 chr2L_20650124_20650460;chr2L_20650537_20650941 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 6.06 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 12.90 8.20 0.00 0.00 2.94 1.89 0.00 2.17 4.65 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 4.17 2.50 0.00 0.00 2.00 3.90 2.20 0.00 K intron_retention Abl,I_chr3L_16622304_16639909,RI_chr3L_16652567_16654512 chr3L - chr3L_16616389_16616736 chr3L_16616388_16616389;chr3L_16616736_16616737 chr3L_16615447_16616388;chr3L_16616737_16618374 57.75 56.14 60.27 89.02 42.50 40.74 68.18 76.47 51.94 69.62 39.56 69.57 48.08 60.56 58.62 78.57 57.75 49.33 62.12 56.35 48.81 32.44 51.76 58.14 72.22 75.86 58.87 48.68 59.09 50.25 69.31 50.00 19.62 61.29 48.55 84.91 58.92 48.53 52.94 52.00 57.98 49.21 57.58 75.21 40.97 62.64 60.16 60.00 62.04 46.09 55.80 62.65 53.57 55.45 63.27 59.63 55.34 55.67 K intron_retention Dyb,I_chr2R_8338101_8339173,I_chr2R_8348603_8351844 chr2R + chr2R_8325077_8325151 chr2R_8325076_8325077;chr2R_8325151_8325152 chr2R_8325012_8325076;chr2R_8325152_8325395 88.89 90.00 92.86 88.46 83.33 NA 84.21 86.36 80.00 NA 83.33 94.12 77.78 75.00 91.67 77.78 92.31 92.31 78.95 89.47 NA NA 87.50 85.71 NA 92.86 80.00 NA NA NA 100.00 NA 100.00 90.00 NA NA NA 88.89 63.64 92.86 100.00 85.19 100.00 90.00 NA NA NA 77.78 90.48 NA 66.67 90.91 NA NA 93.33 70.00 NA NA K jcn_only_AD Sans,RI_chr2R_8825985_8826072,I_chr2R_8826501_8826591 chr2R + chr2R_8824602_8825904;chr2R_8824595_8825904 chr2R_8824493_8825904 chr2R_8825905_8825980;chr2R_8824445_8824492 1.67 NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.33 K alternative_acceptor CG1746,I_chr3R_27043646_27044664,I_chr3R_27043667_27043890,I_chr3R_27043667_27044393,RI_chr3R_27044771_27045268 chr3R - chr3R_27043646_27044664 chr3R_27043667_27044664 chr3R_27044665_27044764;chr3R_27043567_27043645 99.90 100.00 100.00 99.55 99.77 100.00 99.84 99.81 99.91 100.00 99.78 99.88 100.00 99.87 99.90 100.00 100.00 100.00 99.87 99.94 99.82 100.00 100.00 100.00 99.81 100.00 99.86 91.54 99.78 99.83 99.90 99.71 99.84 100.00 99.87 98.97 100.00 99.85 99.90 99.83 99.21 99.86 99.84 100.00 100.00 100.00 99.90 99.87 99.93 99.82 99.90 99.78 99.73 100.00 99.79 99.91 99.92 99.90 K intron_retention CG8121,RI_chr3R_5183458_5183705 chr3R + chr3R_5162442_5162500 chr3R_5162441_5162442;chr3R_5162500_5162501 chr3R_5162205_5162441;chr3R_5162501_5162592 0.00 0.00 0.00 2.67 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor drpr,I_chr3L_1718097_1718705,I_chr3L_1718154_1723579,I_chr3L_1720385_1723579 chr3L - chr3L_1718097_1718705 chr3L_1718154_1718705 chr3L_1718706_1718805;chr3L_1718054_1718096 100.00 99.13 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG3887 chr2L + chr2L_5011485_5011535 chr2L_5011484_5011485;chr2L_5011535_5011536 chr2L_5011412_5011484;chr2L_5011536_5012127 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.74 100.00 100.00 99.69 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.62 99.44 100.00 100.00 100.00 100.00 99.45 100.00 99.07 100.00 100.00 100.00 99.64 100.00 100.00 99.69 99.28 100.00 100.00 100.00 100.00 99.36 100.00 99.58 100.00 100.00 100.00 100.00 100.00 99.56 100.00 100.00 K cassette CG8979 chr2R - chr2R_7855985_7856244 chr2R_7855985_7856051;chr2R_7856137_7856244 chr2R_7856052_7856136 chr2R_7855789_7855984;chr2R_7856245_7856313 5.36 4.17 2.56 13.16 3.70 4.35 6.35 2.27 2.53 5.56 4.76 4.76 11.11 5.71 2.86 5.36 3.03 12.50 2.56 8.33 3.85 5.71 4.76 3.70 6.25 4.76 0.00 5.56 6.67 NA 10.53 NA NA 2.27 8.00 18.75 2.94 7.14 5.56 9.09 NA 7.69 7.14 3.45 NA 11.11 4.00 NA 3.64 4.35 8.00 2.08 NA 18.18 8.33 10.53 2.70 NA K jcn_only_AA stck,I_chr3R_4184313_4184380,I_chr3R_4184660_4184730 chr3R + chr3R_4184313_4184380 chr3R_4184313_4184370 chr3R_4184213_4184312;chr3R_4184381_4184446 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.45 99.61 100.00 100.00 99.64 98.68 100.00 99.25 100.00 98.94 100.00 100.00 100.00 100.00 99.39 100.00 99.46 100.00 100.00 99.47 100.00 99.15 100.00 98.60 98.84 100.00 100.00 100.00 100.00 99.58 100.00 100.00 100.00 100.00 99.62 97.85 100.00 100.00 98.94 100.00 100.00 99.60 99.30 100.00 98.96 100.00 100.00 100.00 99.31 99.31 100.00 K intron_retention CG10267 chr3R + chr3R_2283153_2283214 chr3R_2283152_2283153;chr3R_2283214_2283215 chr3R_2283000_2283152;chr3R_2283215_2283831 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3714,I_chr2L_4190825_4191774,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,I_chr2L_4196780_4197306,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4196780_4197146 chr2L_4196779_4196780;chr2L_4197146_4197147 chr2L_4196715_4196779;chr2L_4197147_4197191 6.90 0.00 9.09 12.82 14.29 0.00 12.90 14.29 6.35 4.00 0.00 8.77 32.14 20.83 0.00 10.91 6.90 0.00 5.71 4.88 0.00 2.70 8.51 2.94 7.89 12.50 9.52 8.33 7.14 4.35 5.00 NA 4.17 9.52 10.34 30.77 6.67 9.09 10.53 13.04 3.85 10.61 3.45 8.33 NA 6.25 NA 0.00 10.00 4.44 0.00 0.00 NA NA 7.41 4.55 5.26 NA K intron_retention Mob4 chr2R - chr2R_2583337_2583396 chr2R_2583336_2583337;chr2R_2583396_2583397 chr2R_2583268_2583336;chr2R_2583397_2583465 1.13 1.13 1.48 3.41 1.82 0.00 1.38 1.14 1.15 0.95 1.15 1.32 0.00 2.15 1.28 0.00 0.00 0.00 2.20 2.27 0.97 3.03 0.95 0.44 1.49 1.60 3.02 3.15 8.33 0.00 1.80 2.04 1.49 1.18 0.00 0.00 0.87 0.98 1.46 1.59 1.74 0.83 0.00 0.87 0.00 0.00 1.57 0.00 0.84 2.16 0.96 1.77 0.65 0.00 0.00 0.00 0.38 0.00 K jcn_only_AD aub chr2L - chr2L_11000919_11001447 chr2L_11000919_11001269 chr2L_11000786_11000918;chr2L_11001448_11001480 100.00 100.00 100.00 98.67 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG4699 chr3R + chr3R_11624200_11624442;chr3R_11624133_11624442;chr3R_11624127_11624442 chr3R_11624190_11624442 chr3R_11624443_11624758;chr3R_11623809_11624126 19.75 22.22 18.52 26.37 20.75 18.75 20.00 19.51 20.37 23.61 14.58 22.34 16.67 12.00 15.49 15.69 24.00 17.50 22.81 14.88 23.26 23.57 26.73 19.75 20.75 24.49 23.53 21.43 14.95 16.24 16.07 19.23 20.97 13.25 19.75 25.97 18.69 17.14 15.65 25.50 26.14 23.08 9.30 17.28 14.78 20.88 18.52 21.11 15.60 21.25 22.37 22.92 19.70 26.00 8.77 20.63 17.02 15.04 K intron_retention garz chr2R + chr2R_8218486_8218542 chr2R_8218485_8218486;chr2R_8218542_8218543 chr2R_8217255_8218485;chr2R_8218543_8219603 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.78 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD cact,RI_chr2L_16314859_16315116,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16325055_16325577;chr2L_16325055_16325587 chr2L_16325055_16325493 chr2L_16324333_16325054;chr2L_16325588_16325598 100.00 99.06 100.00 97.37 96.15 99.19 98.75 99.28 99.48 100.00 98.41 97.93 100.00 99.04 100.00 100.00 100.00 96.15 100.00 99.47 100.00 98.46 99.19 100.00 100.00 100.00 100.00 98.86 100.00 98.96 97.87 100.00 98.44 100.00 100.00 100.00 100.00 98.15 100.00 100.00 98.21 99.04 97.44 100.00 98.67 100.00 100.00 99.25 98.40 99.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Fibp,RI_chr3L_19810268_19810326 chr3L - chr3L_19810268_19810330 chr3L_19810268_19810326 chr3L_19810168_19810267;chr3L_19810331_19810426 0.00 0.00 5.13 0.00 0.00 4.55 0.00 2.00 1.89 4.55 NA 0.00 0.00 NA 2.94 0.00 NA 0.00 4.17 0.00 3.85 1.52 2.56 2.70 3.85 0.00 0.00 3.23 2.70 3.23 2.50 0.00 3.45 0.00 NA 3.12 0.00 0.00 1.89 3.28 0.00 0.00 0.00 2.63 0.00 2.04 0.00 1.89 1.64 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 3.03 K cassette CG11168,I_chr3R_20745770_20745849,I_chr3R_20745983_20746038 chr3R + chr3R_20745770_20746038 chr3R_20745770_20745842;chr3R_20745983_20746038 chr3R_20745843_20745982 chr3R_20745670_20745769;chr3R_20746039_20746053 23.08 NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA 44.44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 18.18 NA 25.00 NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA NA K alternative_donor Zyx102EF,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1080463_1081118 chr4_1080463_1081038 chr4_1080446_1080462;chr4_1081119_1081180 96.92 94.12 95.00 97.22 88.89 85.71 96.67 96.97 97.44 NA 100.00 92.31 100.00 100.00 81.82 100.00 94.74 100.00 100.00 96.88 92.31 88.89 95.65 93.75 87.50 100.00 100.00 92.86 91.67 100.00 90.48 100.00 100.00 91.89 91.67 100.00 100.00 92.86 91.67 100.00 100.00 100.00 93.75 100.00 85.71 100.00 100.00 100.00 97.56 81.25 96.00 94.12 100.00 100.00 95.45 100.00 100.00 94.44 K cassette srp,I_chr3R_11825782_11827473,I_chr3R_11826508_11826910 chr3R + chr3R_11825782_11826910;chr3R_11825782_11827473 chr3R_11825782_11826334;chr3R_11826508_11827473,chr3R_11826508_11826910 chr3R_11826335_11826507 chr3R_11825682_11825781;chr3R_11827474_11827573 35.59 36.84 30.25 33.10 32.97 29.25 42.71 41.10 44.74 32.47 32.95 34.05 38.75 36.67 31.45 43.36 41.43 35.35 47.42 42.57 23.53 25.77 39.60 31.40 30.84 37.36 43.15 36.59 36.52 31.46 35.42 38.21 36.10 34.59 34.45 35.67 32.97 32.08 28.27 38.39 29.77 34.15 36.67 44.87 28.75 39.24 38.10 34.69 35.96 38.85 40.94 36.47 35.59 33.33 35.45 35.00 41.04 32.48 N jcn_only_AD bel,I_chr3R_4484110_4485922 chr3R - chr3R_4481629_4481708 chr3R_4481629_4481699 chr3R_4480932_4481628;chr3R_4481709_4483565 23.53 23.50 35.04 30.67 21.99 26.04 24.42 29.17 22.67 17.78 27.37 21.91 24.62 23.88 21.08 35.85 32.79 33.73 42.11 23.67 34.65 23.00 20.47 21.72 22.49 23.53 24.86 17.93 24.75 21.87 30.84 22.70 21.02 26.49 22.17 28.26 30.11 25.00 20.07 23.28 19.27 26.82 30.10 23.40 18.68 21.76 20.66 19.86 25.93 20.50 26.15 29.08 18.57 24.37 25.16 21.88 22.89 20.05 K mutually_exclusive PMCA,I_chr4_350028_350896,E_chr4_350055_363541,I_chr4_350064_350896,I_chr4_350959_363547,I_chr4_352629_354970,I_chr4_352629_358161,RI_chr4_355160_363547,I_chr4_371836_372509,I_chr4_373671_374568,I_chr4_376108_379519 chr4 - chr4_350055_352023,chr4_352629_363547 chr4_350055_350896,chr4_350966_363547 chr4_352024_352628 chr4_350897_350965 chr4_349964_350054;chr4_363548_363641 31.25 25.00 34.62 9.80 38.89 42.86 3.54 35.48 24.32 7.14 41.67 22.22 35.62 21.43 14.81 25.71 22.22 26.32 30.77 47.22 23.53 53.12 29.03 33.33 16.67 19.23 33.33 41.18 29.41 31.25 57.14 56.25 40.91 28.00 26.32 13.33 13.73 50.00 37.50 29.27 34.48 36.67 12.00 56.00 23.53 57.14 52.63 35.71 25.00 45.83 35.71 14.29 12.90 50.00 28.57 47.06 45.83 48.72 K jcn_only_AD Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3295176;chr2R_3294566_3295244;chr2R_3294566_3294634;chr2R_3294566_3294636;chr2R_3294566_3294638;chr2R_3294566_3295280;chr2R_3294566_3294642 chr2R_3294566_3294714 chr2R_3294491_3294565;chr2R_3295281_3295302 3.17 0.00 3.12 0.00 NA 3.70 5.71 5.88 1.22 NA 3.03 5.56 12.00 0.00 0.00 6.90 4.76 5.00 7.69 2.99 3.33 0.00 5.00 3.23 0.00 14.81 4.35 0.00 3.12 6.25 0.00 6.67 0.00 5.00 NA NA 0.00 18.18 4.88 1.82 0.00 0.00 18.18 9.38 0.00 4.76 4.00 4.76 1.49 0.00 3.70 0.00 0.00 NA 3.33 0.00 0.00 1.79 K intron_retention Tango13,I_chrX_13480088_13480998,I_chrX_13483861_13483954 chrX + chrX_13480088_13483954 chrX_13480087_13480088;chrX_13483954_13483955 chrX_13479988_13480087;chrX_13483955_13484054 2.92 2.13 2.44 1.94 2.78 1.47 7.89 1.77 3.78 1.61 0.00 2.84 0.00 3.17 3.19 2.15 0.00 19.23 0.00 3.14 0.00 7.69 2.38 4.84 2.41 3.12 3.70 5.41 6.94 5.00 3.70 3.28 2.70 2.65 2.22 3.23 2.55 2.36 3.57 2.92 0.00 3.50 0.00 3.42 3.28 3.74 2.50 4.24 3.73 3.03 1.49 1.32 3.08 3.08 2.50 4.35 3.39 0.00 K intron_retention CG11299,I_chr2R_19619053_19619186 chr2R + chr2R_19618615_19618679 chr2R_19618614_19618615;chr2R_19618679_19618680 chr2R_19618432_19618614;chr2R_19618680_19619052 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 4.55 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 25.00 0.00 0.00 NA NA 0.00 NA NA 7.14 0.00 NA 8.33 0.00 NA 0.00 0.00 0.00 0.00 3.39 NA 2.70 0.00 0.00 0.00 0.00 0.00 10.71 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.03 0.00 0.00 K alternative_donor flr chr3L + chr3L_13406076_13406416 chr3L_13406174_13406416 chr3L_13406417_13406538;chr3L_13405928_13406075 2.73 1.33 1.73 1.60 1.48 1.73 3.24 2.73 2.71 1.22 2.89 2.92 2.82 2.46 3.59 2.82 2.26 4.96 1.18 3.82 1.99 10.12 2.51 2.48 5.00 3.41 7.44 2.80 29.57 2.94 7.69 4.35 3.93 3.91 2.44 5.74 3.80 2.05 2.69 2.52 3.48 2.61 1.52 2.51 2.34 3.08 2.11 3.68 3.28 4.21 2.69 2.73 2.99 3.09 2.31 2.24 2.06 2.31 K intron_retention CG31229,CG7702 chr3R + chr3R_14494525_14494593 chr3R_14494524_14494525;chr3R_14494593_14494594 chr3R_14494331_14494524;chr3R_14494594_14494952 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 NA 2.63 1.72 0.00 0.00 0.00 0.00 6.45 0.00 0.00 0.00 0.00 4.76 0.00 0.00 4.08 0.00 2.70 0.00 0.00 0.00 4.00 0.00 1.79 0.00 0.00 0.00 0.00 5.71 4.08 0.00 0.00 1.33 0.00 0.00 0.00 0.00 K jcn_only_AD CG31689,I_chr2L_2730373_2736310,I_chr2L_2730470_2736310,RI_chr2L_2736137_2736310,I_chr2L_2736230_2736310,I_chr2L_2736431_2737036 chr2L + chr2L_2730373_2736173 chr2L_2730470_2736173 chr2L_2736174_2736229;chr2L_2730370_2730372 12.27 4.55 NA 14.81 NA NA 18.18 13.51 9.30 NA NA 11.63 4.76 NA NA 21.43 4.17 NA 8.00 8.70 NA NA 15.00 10.00 NA NA 16.33 NA NA NA NA NA NA 10.87 NA 14.29 NA 15.00 NA 13.89 NA 12.90 8.70 4.76 NA 24.14 NA NA 20.59 8.00 4.00 15.00 NA NA 6.67 15.00 NA NA K jcn_only_AD Tfb1 chr2R + chr2R_10250584_10250749 chr2R_10250627_10250749 chr2R_10250750_10251018;chr2R_10250565_10250583 20.61 NA NA 21.21 NA 24.00 NA 13.16 18.18 NA NA 22.22 NA NA 18.18 NA NA NA NA 10.34 20.00 NA NA NA NA NA NA NA NA NA NA NA 73.08 14.81 NA NA NA NA NA 52.94 NA 19.05 NA NA 28.26 NA NA 69.57 11.76 NA NA NA NA NA NA NA NA 56.00 K cassette CG10960,I_chr3L_12820683_12835879 chr3L - chr3L_12820683_12835879 chr3L_12820683_12828411;chr3L_12828450_12835879 chr3L_12828412_12828449 chr3L_12820583_12820682;chr3L_12835880_12835979 99.08 98.59 98.82 100.00 98.18 100.00 95.45 99.43 99.49 95.56 98.78 99.28 100.00 100.00 100.00 99.08 98.65 98.57 98.65 100.00 95.52 97.37 100.00 98.41 93.94 89.02 100.00 97.30 100.00 98.55 98.88 96.67 98.70 100.00 100.00 94.74 98.65 100.00 100.00 98.81 90.00 99.35 100.00 100.00 96.55 100.00 97.83 98.39 99.19 100.00 100.00 100.00 100.00 100.00 99.03 100.00 100.00 96.43 K jcn_only_AA Nplp2,I_chr3L_13349726_13349896 chr3L + chr3L_13349953_13350119 chr3L_13349953_13350107 chr3L_13349897_13349952;chr3L_13350120_13350349 99.99 99.99 100.00 99.99 99.99 100.00 100.00 99.99 99.99 100.00 99.98 99.99 99.99 100.00 100.00 99.99 99.98 99.99 99.99 100.00 99.97 100.00 100.00 99.98 99.99 99.99 99.98 99.70 100.00 100.00 100.00 100.00 100.00 99.99 100.00 100.00 99.99 99.99 100.00 99.99 99.99 99.99 99.99 99.98 100.00 99.98 99.99 99.99 99.99 100.00 100.00 99.99 99.99 99.99 99.99 99.99 99.99 100.00 K alternative_donor ran,I_chrX_11040449_11042518,I_chrX_11040462_11041873,I_chrX_11040462_11042000 chrX - chrX_11040462_11042000;chrX_11040462_11042518 chrX_11040462_11041873 chrX_11040362_11040461;chrX_11042519_11042618 0.14 0.14 0.13 0.23 0.00 0.18 0.10 0.09 0.13 0.31 0.00 0.08 0.00 0.16 0.12 0.10 0.19 0.00 0.00 0.14 0.00 0.24 0.12 0.11 0.00 0.13 0.21 0.97 0.42 0.21 0.13 0.23 0.41 0.19 0.18 0.00 0.32 0.17 0.36 0.35 0.32 0.07 0.00 0.16 0.00 0.12 0.00 0.70 0.07 0.22 0.22 0.22 0.00 0.15 0.12 0.23 0.09 0.37 K intron_retention Ku80 chr2L - chr2L_15770842_15770896 chr2L_15770841_15770842;chr2L_15770896_15770897 chr2L_15770609_15770841;chr2L_15770897_15770992 0.00 0.00 0.00 9.52 NA 0.00 7.32 0.00 0.00 NA 18.75 2.13 0.00 0.00 0.00 0.00 0.00 NA 0.00 5.13 7.14 3.57 8.70 0.00 19.23 23.08 10.34 0.00 18.92 0.00 9.30 0.00 0.00 0.00 0.00 17.14 13.04 0.00 0.00 2.27 21.74 7.32 NA 9.38 0.00 10.34 0.00 14.29 0.00 0.00 5.26 9.09 0.00 9.09 3.03 0.00 0.00 3.12 K intron_retention svr,RI_chrX_421417_421591 chrX + chrX_390582_390633 chrX_390581_390582;chrX_390633_390634 chrX_390575_390581;chrX_390634_391422 90.00 NA 88.24 NA 77.78 NA 88.89 94.74 87.10 NA 70.00 95.00 84.62 93.75 88.89 90.00 90.91 92.31 84.21 88.89 91.67 NA 90.91 90.91 87.50 84.62 91.67 NA NA 87.50 95.24 NA NA 95.83 NA 100.00 NA NA NA 92.31 NA 84.00 100.00 90.00 NA NA 88.89 NA 92.86 NA 75.00 92.31 NA NA 63.64 NA 90.00 NA K alternative_acceptor CG3409,I_chr2R_2591946_2592739,RI_chr2R_2593704_2599587 chr2R - chr2R_2591946_2592739 chr2R_2592092_2592739 chr2R_2592740_2592839;chr2R_2591846_2591945 100.00 100.00 92.86 100.00 100.00 92.86 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 66.67 93.75 100.00 90.91 100.00 100.00 NA 100.00 100.00 100.00 NA 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 93.33 100.00 NA 100.00 100.00 100.00 100.00 K cassette I_chr2R_19695638_19696332,RI_chr2R_19699261_19699317,CG4797 chr2R - chr2R_19702258_19705573 chr2R_19702258_19702964;chr2R_19703125_19705573 chr2R_19702965_19703124 chr2R_19702119_19702257;chr2R_19705574_19705752 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA noncoding_23420,hep chrX - chrX_12975077_12975545 chrX_12975152_12975545 chrX_12975546_12976097;chrX_12974671_12975076 39.31 37.50 44.00 60.62 42.64 35.33 16.18 54.19 40.76 36.30 39.22 41.84 42.86 53.76 36.84 51.26 53.91 53.72 54.21 40.62 42.31 50.77 35.06 37.07 52.23 74.14 36.00 45.83 28.57 31.76 49.65 29.88 30.59 46.07 40.99 54.14 36.51 34.58 36.83 39.31 46.92 45.76 42.34 42.31 22.66 32.33 24.88 30.97 32.54 30.80 34.17 39.66 25.62 32.75 50.39 36.17 25.10 22.03 N intron_retention Rip11,E_chrX_18532733_18533695,RI_chrX_18530353_18530870,RI_chrX_18530742_18530870,RI_chrX_18544139_18544185 chrX - chrX_18530353_18531363 chrX_18530352_18530353;chrX_18531363_18531364 chrX_18530253_18530352;chrX_18531364_18531426 100.00 100.00 100.00 NA NA NA 100.00 NA 100.00 NA 45.45 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 66.67 100.00 NA 100.00 100.00 100.00 100.00 NA NA NA NA 100.00 100.00 NA K jcn_only_AD CG3287,I_chr2R_2698891_2699406,I_chr2R_2700203_2700285 chr2R + chr2R_2698681_2699406;chr2R_2698891_2699406;chr2R_2699349_2699406 chr2R_2698654_2699406 chr2R_2699407_2699506;chr2R_2698533_2698653 1.00 1.32 0.00 1.47 0.00 0.97 2.04 0.00 1.36 0.00 1.39 1.56 0.00 1.00 0.73 3.09 2.00 2.60 0.87 0.94 0.00 7.48 4.48 2.94 0.00 1.00 0.00 6.85 0.97 1.02 0.00 3.64 0.00 0.00 0.84 0.94 2.94 1.47 2.94 0.00 0.00 0.65 0.00 2.80 1.09 0.75 2.17 0.92 1.13 0.00 1.45 0.00 1.41 1.43 0.79 1.32 0.00 2.63 K intron_retention IP3K2,I_chrX_13216481_13219804 chrX + chrX_13221631_13221698 chrX_13221630_13221631;chrX_13221698_13221699 chrX_13221381_13221630;chrX_13221699_13221967 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.96 1.25 0.00 1.54 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.79 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 K jcn_only_AD lig,CI_chr2R_3962006_3962916,I_chr2R_3962357_3962977,RI_chr2R_3962875_3962977 chr2R + chr2R_3961910_3962977;chr2R_3962006_3962977 chr2R_3961577_3962977 chr2R_3962978_3963016;chr2R_3961479_3961576 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.26 0.27 0.00 0.00 0.33 0.00 0.37 0.54 0.00 0.40 0.16 0.00 0.37 0.31 0.23 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.36 0.00 K intron_retention dome,I_chrX_19573364_19573474 chrX - chrX_19570482_19570541 chrX_19570481_19570482;chrX_19570541_19570542 chrX_19570128_19570481;chrX_19570542_19572214 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD RpL18A,I_chr2R_13434492_13434554,I_chr2R_13434492_13434576 chr2R - chr2R_13434492_13434913;chr2R_13434492_13434554 chr2R_13434492_13434576 chr2R_13434392_13434491;chr2R_13434914_13434994 0.07 0.08 0.00 0.08 0.17 0.00 0.07 0.00 0.00 0.00 0.03 0.00 0.09 0.08 0.00 0.03 0.00 0.00 0.03 0.01 0.00 0.17 0.00 0.33 0.85 0.06 1.17 0.00 0.54 0.11 0.07 0.04 0.13 0.04 0.00 0.18 0.09 0.25 0.12 0.04 0.11 0.02 0.00 0.07 0.11 0.10 0.16 0.06 0.08 0.00 0.00 0.32 0.11 0.00 0.02 0.11 0.18 0.10 K intron_retention CG12393,CG9135 chr2L + chr2L_6049347_6049413 chr2L_6049346_6049347;chr2L_6049413_6049414 chr2L_6049011_6049346;chr2L_6049414_6049632 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 1.18 0.00 4.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG5270,I_chr3R_7253146_7253201,F_chr3R_7256294_7256363 chr3R + chr3R_7253142_7253201 chr3R_7253146_7253201 chr3R_7253202_7253301;chr3R_7253046_7253141 2.17 2.86 9.09 1.96 0.00 0.00 2.17 2.17 0.00 NA 0.00 3.92 8.00 4.55 3.23 0.00 0.00 4.35 0.00 5.00 0.00 3.03 0.00 2.94 0.00 3.85 0.00 0.00 0.00 3.70 0.00 NA 0.00 2.78 NA NA 4.26 2.78 6.45 0.00 NA 3.03 NA 2.94 NA NA NA 5.00 4.69 NA 2.50 NA NA NA 0.00 0.00 0.00 NA K cassette bbc,I_chr2R_9376554_9377246,REI_chr2R_9379401_9381986 chr2R - chr2R_9375638_9378939;chr2R_9375638_9377246 chr2R_9375638_9376421;chr2R_9376554_9377246,chr2R_9376554_9378939 chr2R_9376422_9376553 chr2R_9375479_9375637;chr2R_9378940_9379098 22.64 22.73 38.64 18.75 12.77 35.90 20.88 27.85 22.58 15.00 16.90 32.10 19.05 36.11 29.41 27.06 20.93 23.88 22.58 27.34 16.87 40.00 22.92 23.86 17.65 29.17 20.00 11.48 12.00 21.05 39.02 26.92 15.38 28.57 32.14 19.79 8.82 23.53 16.25 18.57 17.86 27.47 21.05 22.64 19.15 28.57 32.43 26.32 25.30 18.18 24.59 12.82 22.50 23.68 24.56 18.64 13.56 30.00 K intron_retention CG14701,REI_chr3R_7058154_7058208,RI_chr3R_7061265_7061322 chr3R + chr3R_7057991_7058062 chr3R_7057990_7057991;chr3R_7058062_7058063 chr3R_7057916_7057990;chr3R_7058063_7058153 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 NA 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 4.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Atpalpha,I_chr3R_16788018_16789830,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16789916_16789979 chr3R_16789915_16789916;chr3R_16789979_16789980 chr3R_16789831_16789915;chr3R_16789980_16791761 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG40439,I_chr2L_22690863_22690905 chr2L - chr2L_22690855_22690905;chr2L_22690836_22690905 chr2L_22690863_22690905 chr2L_22690906_22691005;chr2L_22690763_22690835 0.74 0.00 0.00 2.81 0.00 1.89 0.77 2.40 1.15 0.00 0.00 1.48 1.18 0.91 10.81 1.18 0.00 0.00 1.30 2.59 0.00 3.57 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 1.59 2.44 NA 0.74 0.00 0.00 0.00 NA NA 6.38 0.00 3.33 2.94 1.79 NA 0.00 0.00 3.03 0.74 1.85 0.00 0.00 0.00 NA 1.59 0.00 1.14 1.11 K alternative_acceptor Rbp1,Mcm5 chr3R + chr3R_6610646_6611879 chr3R_6610646_6611124 chr3R_6610279_6610645;chr3R_6611880_6612229 25.00 17.50 22.86 50.57 60.00 22.22 34.02 50.43 32.20 15.19 39.02 27.81 48.15 39.71 26.47 53.85 40.00 25.00 43.64 29.32 35.00 20.43 18.07 13.87 17.00 31.58 25.23 25.71 17.78 27.16 43.40 21.25 19.39 39.64 21.05 19.54 13.82 10.62 10.44 23.57 11.93 26.88 32.14 32.88 19.79 24.27 17.19 25.00 32.08 15.65 22.95 21.43 16.54 12.50 30.14 16.06 17.54 25.42 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2395659 chrX_2388671_2389073;chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2395659 chrX_2389074_2389271;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664 chrX_2388641_2388670;chrX_2395660_2395759 0.00 NA NA NA NA NA NA NA 0.00 NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention noncoding_5243,I_chr2R_4553376_4563976,l(2)44DEa,I_chr2R_4553577_4562151,I_chr2R_4553817_4565934,I_chr2R_4554300_4563976,I_chr2R_4559579_4559675,I_chr2R_4565692_4565934 chr2R + chr2R_4553376_4562151 chr2R_4553375_4553376;chr2R_4562151_4562152 chr2R_4553371_4553375;chr2R_4562152_4562251 0.00 NA NA 0.00 NA 0.00 16.13 3.57 0.00 NA NA 13.33 NA NA 0.00 6.98 0.00 NA 7.41 NA NA NA NA NA NA 0.00 NA NA NA NA 7.41 NA NA 14.71 NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA 10.81 NA NA NA NA NA 0.00 NA NA NA K intron_retention CG1657 chrX + chrX_11227180_11227254 chrX_11227179_11227180;chrX_11227254_11227255 chrX_11226331_11227179;chrX_11227255_11227351 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 1.12 1.72 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention bdg,I_chr2R_11824086_11824186,CEI_chr2R_11826763_11827279 chr2R - chr2R_11812934_11812999 chr2R_11812933_11812934;chr2R_11812999_11813000 chr2R_11812769_11812933;chr2R_11813000_11814186 0.00 8.57 0.00 6.98 0.00 0.00 0.00 0.00 8.20 0.00 0.00 4.92 0.00 0.00 0.00 0.00 4.17 5.71 15.38 6.45 3.23 4.76 3.92 5.71 0.00 0.00 10.81 9.09 0.00 2.56 0.00 0.00 10.71 0.00 0.00 0.00 0.00 5.71 0.00 5.97 0.00 0.00 0.00 10.53 0.00 6.06 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.41 N cassette Tsp42Ed chr2R - chr2R_2897806_2899096 chr2R_2897806_2897936;chr2R_2898099_2899096 chr2R_2897937_2898098 chr2R_2897608_2897805;chr2R_2899097_2899359 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette sec31,I_chr2R_4783150_4783708 chr2R + chr2R_4783150_4783708 chr2R_4783150_4783458;chr2R_4783559_4783708 chr2R_4783459_4783558 chr2R_4783050_4783149;chr2R_4783709_4783808 98.79 99.15 100.00 99.44 98.94 100.00 94.78 98.19 99.15 97.96 96.74 98.85 100.00 98.91 98.33 99.35 100.00 97.73 98.95 98.79 98.89 93.28 96.45 99.27 97.40 97.85 98.50 98.57 97.30 97.59 94.59 100.00 98.04 99.34 98.80 95.45 99.32 98.17 98.17 99.30 98.31 99.00 98.70 99.11 95.38 97.83 99.15 98.25 99.42 99.22 97.53 98.75 100.00 98.91 100.00 99.01 98.65 98.51 K intron_retention I_chr3R_1303481_1304607,CG31550 chr3R + chr3R_1312607_1313556 chr3R_1312606_1312607;chr3R_1313556_1313557 chr3R_1312598_1312606;chr3R_1313557_1314029 26.67 NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA 28.57 NA 9.52 NA NA NA NA NA NA 30.77 NA 0.00 54.55 33.33 NA 14.29 7.69 12.50 NA 0.00 19.23 NA 30.77 NA NA 6.67 14.29 NA 29.41 46.15 26.67 NA NA NA NA NA NA NA 47.06 K jcn_only_AA RpL9,I_chr2L_11003236_11003510 chr2L - chr2L_11003236_11003510 chr2L_11003239_11003510 chr2L_11003511_11003610;chr2L_11003136_11003235 100.00 99.99 100.00 100.00 100.00 100.00 99.99 100.00 99.99 100.00 100.00 99.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.99 100.00 100.00 100.00 99.99 100.00 100.00 99.99 99.99 99.99 99.99 99.99 99.98 100.00 100.00 100.00 100.00 99.99 100.00 99.99 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.98 99.99 100.00 99.99 100.00 100.00 100.00 100.00 99.98 100.00 99.98 K alternative_acceptor CG31211 chr3R + chr3R_7777961_7778368;chr3R_7777961_7778362 chr3R_7777961_7778390 chr3R_7777954_7777960;chr3R_7778391_7778487 0.00 0.00 0.00 0.00 0.00 6.25 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 4.55 4.00 5.56 K cassette CG17337,REI_chr2R_1585514_1586790,I_chr2R_1585514_1586919,RI_chr2R_1586737_1586790 chr2R + chr2R_1585514_1586919 chr2R_1585514_1586790;chr2R_1586859_1586919 chr2R_1586791_1586858 chr2R_1585414_1585513;chr2R_1586920_1587019 100.00 100.00 96.55 95.83 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 96.30 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG12299 chr2L + chr2L_10737768_10737875 chr2L_10737767_10737768;chr2L_10737875_10737876 chr2L_10737345_10737767;chr2L_10737876_10740765 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 2.33 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 3.45 0.00 0.00 0.00 NA 5.41 13.79 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.50 K alternative_donor Sk1 chrX + chrX_11336742_11337599;chrX_11336791_11337599 chrX_11336654_11337599 chrX_11337600_11340043;chrX_11336565_11336653 16.67 NA NA NA NA NA NA NA 37.50 NA NA NA NA NA NA NA NA NA NA 16.67 NA 28.57 NA NA NA NA NA NA NA NA NA NA 16.67 16.67 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 11.11 NA NA NA NA NA NA NA NA NA N intron_retention CG42394,noncoding_15936,E_chr3R_6675742_6676058 chr3R + chr3R_6677211_6677344 chr3R_6677210_6677211;chr3R_6677344_6677345 chr3R_6677007_6677210;chr3R_6677345_6677430 100.00 100.00 100.00 93.29 100.00 100.00 100.00 92.52 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor I_chr2L_19644636_19644695,REI_chr2L_19702035_19702145,Nf-YB chr2L + chr2L_19736209_19736289 chr2L_19736209_19736272 chr2L_19736042_19736208;chr2L_19736290_19736580 100.00 100.00 97.06 97.56 94.74 100.00 96.55 100.00 100.00 94.44 94.74 97.67 95.45 94.74 100.00 100.00 100.00 100.00 96.77 95.00 94.74 100.00 97.14 100.00 94.12 96.30 100.00 73.91 93.33 94.74 100.00 100.00 94.12 97.30 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 95.92 96.88 97.06 100.00 100.00 100.00 96.00 93.10 100.00 100.00 K intron_retention tho2 chr2L - chr2L_2138159_2138345 chr2L_2138158_2138159;chr2L_2138345_2138346 chr2L_2137984_2138158;chr2L_2138346_2138659 23.87 NA NA 25.00 NA NA 31.82 36.36 31.03 NA 22.22 31.25 NA NA 50.00 17.39 66.67 NA NA 28.57 25.00 NA 18.52 26.32 NA NA 18.18 33.33 8.00 10.53 30.77 12.50 12.50 36.36 16.67 19.35 20.00 NA 27.78 21.43 NA 33.33 NA 28.57 11.76 6.90 NA 22.22 38.89 9.09 33.33 28.57 9.52 NA 42.86 22.73 9.09 18.18 K alternative_donor CG4290,RI_chrX_1954878_1955077,I_chrX_1962457_1964222 chrX - chrX_1954878_1955654 chrX_1954878_1955077 chrX_1954809_1954877;chrX_1955655_1955758 33.33 NA NA NA NA NA 20.00 50.00 40.00 NA NA 20.00 NA NA NA NA NA 100.00 NA NA NA 57.14 NA NA NA NA NA NA 33.33 NA 33.33 NA 66.67 20.00 NA NA NA NA NA 22.22 NA 50.00 NA 20.00 NA NA NA NA 33.33 NA 50.00 NA NA NA 12.50 NA NA NA K intron_retention gp210,I_chr2R_1653709_1654789,I_chr2R_1655359_1655422 chr2R + chr2R_1655566_1656847 chr2R_1655565_1655566;chr2R_1656847_1656848 chr2R_1655423_1655565;chr2R_1656848_1657000 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Nc73EF,I_chr3L_16950628_16951334,I_chr3L_16950952_16952198,I_chr3L_16951588_16952198,I_chr3L_16951626_16952198,I_chr3L_16952138_16952198,I_chr3L_16952985_16955434,I_chr3L_16953768_16954599 chr3L + chr3L_16950628_16952198;chr3L_16950606_16952198 chr3L_16950615_16952198 chr3L_16952199_16952207;chr3L_16950580_16950605 14.64 28.57 13.33 7.14 14.29 12.50 10.00 11.11 18.52 14.29 30.00 27.78 0.00 14.29 20.00 20.00 28.57 20.00 16.67 20.83 12.50 10.00 22.22 21.43 12.50 0.00 12.50 10.00 0.00 NA 12.50 NA NA 13.64 22.22 0.00 15.00 7.14 21.43 18.18 NA 28.57 28.57 14.29 14.29 14.29 37.50 NA 18.18 18.75 15.79 14.29 NA 20.00 12.50 27.27 16.67 NA K jcn_only_AA I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545615_17545855 chr2R_17545615_17545850 chr2R_17545613_17545614;chr2R_17545856_17545985 79.31 87.50 81.54 71.11 81.71 74.16 80.95 82.47 86.11 NA 76.79 77.23 86.00 77.36 79.63 68.52 81.82 67.61 84.51 78.99 75.00 NA NA NA NA 78.69 NA NA NA NA 81.25 88.46 84.62 78.64 NA NA NA NA NA NA NA 76.84 76.92 NA 80.00 NA NA NA 78.30 NA NA NA 84.62 NA 73.58 NA 86.96 75.00 K intron_retention dre4,I_chr3L_1875590_1875651,F_chr3L_1877432_1877517 chr3L - chr3L_1872471_1872581 chr3L_1872470_1872471;chr3L_1872581_1872582 chr3L_1872354_1872470;chr3L_1872582_1872735 5.56 5.97 8.33 7.43 11.11 2.56 6.32 10.11 9.00 0.00 3.45 3.88 4.76 19.35 5.41 10.00 3.45 4.35 11.76 5.23 3.28 12.50 9.02 6.19 4.88 2.00 7.69 16.67 7.41 7.58 4.62 2.99 4.26 6.38 2.82 2.20 6.85 7.46 3.54 5.66 5.98 6.06 7.84 5.56 0.82 4.03 6.98 5.15 5.50 3.37 6.61 6.38 1.72 4.60 5.41 5.71 4.62 2.35 K intron_retention Idh,I_chr3L_8351006_8351949,I_chr3L_8351036_8351655 chr3L - chr3L_8351816_8351949 chr3L_8351815_8351816;chr3L_8351949_8351950 chr3L_8351656_8351815;chr3L_8351950_8351962 91.67 90.91 84.62 100.00 92.86 100.00 94.74 92.86 97.22 NA 94.12 84.85 91.67 94.12 93.75 90.91 93.33 92.86 94.12 91.67 93.33 NA 81.25 81.25 NA 92.31 92.86 91.67 NA 90.91 88.89 NA 92.31 96.30 NA 80.00 91.67 80.00 NA 93.75 90.91 91.30 91.67 90.00 88.89 NA 90.00 75.00 89.29 NA 90.91 87.50 90.91 NA 91.67 87.50 91.67 77.78 K intron_retention CG7222 chr2R + chr2R_6701242_6701535 chr2R_6701241_6701242;chr2R_6701535_6701536 chr2R_6701023_6701241;chr2R_6701536_6701719 5.26 0.00 3.77 5.10 3.70 5.26 6.67 7.34 8.08 8.70 3.45 6.32 2.38 2.17 4.65 7.79 0.00 6.38 7.46 9.91 2.70 16.67 4.84 8.00 7.14 6.67 5.88 10.53 9.68 0.00 9.26 3.45 6.82 6.48 8.00 6.67 7.27 5.71 0.00 10.53 0.00 4.44 2.27 2.86 8.33 5.17 2.38 11.90 6.48 0.00 5.88 0.00 4.35 4.55 3.57 2.70 4.17 4.44 K intron_retention Nlp,I_chr3R_25834987_25835399 chr3R + chr3R_25831144_25835399 chr3R_25831143_25831144;chr3R_25835399_25835400 chr3R_25831010_25831143;chr3R_25835400_25835499 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.14 0.19 0.00 0.23 0.22 0.00 0.00 0.18 0.20 0.00 0.22 0.00 0.08 0.00 0.65 0.16 0.00 0.53 0.00 0.57 0.53 0.00 0.00 0.00 0.00 0.00 0.29 0.96 0.00 0.12 0.00 0.52 0.00 0.00 0.20 0.00 0.20 0.00 0.00 0.00 0.30 0.29 0.00 0.20 0.00 0.21 0.00 0.00 0.15 0.00 0.00 K intron_retention Rab1,I_chr3R_17094214_17094492,I_chr3R_17099005_17099062 chr3R - chr3R_17093280_17093341 chr3R_17093279_17093280;chr3R_17093341_17093342 chr3R_17093232_17093279;chr3R_17093342_17093462 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor RI_chr3R_5088705_5088796,Aats-trp,RI_chr3R_5090799_5091007 chr3R - chr3R_5090780_5091007 chr3R_5090799_5091007 chr3R_5091008_5091107;chr3R_5090699_5090779 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 84.62 100.00 NA 100.00 63.64 92.31 87.50 NA 93.33 100.00 100.00 95.45 NA NA 85.71 85.71 NA 100.00 88.89 96.00 100.00 75.00 NA 100.00 NA NA 100.00 100.00 88.89 88.89 NA NA 95.00 100.00 100.00 90.00 K jcn_only_AA RpL30,I_chr2L_19008540_19008948,REI_chr2L_19008544_19008723,I_chr2L_19008544_19008918,snoRNA:Me28S-A2113 chr2L - chr2L_19008540_19008948 chr2L_19008544_19008948 chr2L_19008949_19009018;chr2L_19008444_19008539 99.98 99.98 99.98 99.98 100.00 99.96 99.98 99.94 99.97 100.00 100.00 99.99 99.98 100.00 100.00 100.00 99.96 99.96 100.00 99.98 99.98 100.00 100.00 99.97 99.98 99.96 99.97 99.98 99.98 99.98 100.00 100.00 99.95 100.00 100.00 99.96 99.98 99.99 100.00 99.97 99.94 99.99 99.95 99.99 99.99 100.00 99.99 99.95 99.95 99.98 99.96 99.96 99.97 99.99 100.00 100.00 99.99 99.98 K alternative_acceptor Cyp9f2,RI_chr3R_8230559_8231431 chr3R - chr3R_8230559_8231431 chr3R_8230612_8231431 chr3R_8231432_8231531;chr3R_8230460_8230558 75.00 NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Vps20 chr2R + chr2R_18496135_18496188 chr2R_18496134_18496135;chr2R_18496188_18496189 chr2R_18496038_18496134;chr2R_18496189_18496298 93.75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 93.75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention gish chr3R + chr3R_12127074_12127544 chr3R_12127073_12127074;chr3R_12127544_12127545 chr3R_12126967_12127073;chr3R_12127545_12127876 5.33 5.97 8.22 14.77 0.00 6.67 10.34 7.37 6.12 0.00 3.92 13.33 5.56 3.85 10.71 7.22 8.00 1.82 3.95 6.20 4.55 8.70 4.24 2.75 1.59 7.14 4.08 11.36 2.41 3.12 7.69 5.36 5.10 5.61 3.23 12.20 3.00 1.12 3.12 5.41 6.67 4.65 5.97 4.55 3.03 4.46 0.00 7.46 6.40 2.94 4.63 5.33 0.00 7.25 8.25 3.81 4.59 6.98 K jcn_only_AD mts,RI_chr2L_7828669_7830461,RI_chr2L_7828959_7830461 chr2L + chr2L_7828154_7830461 chr2L_7828669_7830461 chr2L_7830462_7830561;chr2L_7827683_7828153 0.28 0.28 0.22 0.14 0.00 0.00 0.17 0.00 0.32 0.00 0.00 0.26 0.00 0.27 0.46 0.32 0.00 0.00 0.00 0.75 0.29 1.02 0.00 0.54 1.05 0.43 0.61 0.40 0.00 0.40 1.66 0.92 0.39 0.14 0.33 0.39 0.25 0.00 0.41 0.25 0.00 0.14 0.00 0.96 0.55 0.34 0.00 1.02 0.00 0.38 0.80 0.70 0.00 1.09 0.00 0.34 0.00 0.38 K jcn_only_AA CG5360 chr2R + chr2R_19411660_19411871 chr2R_19411660_19411756 chr2R_19411476_19411659;chr2R_19411872_19411935 100.00 NA 95.00 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA 95.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 93.10 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention sti,REI_chr3L_12506503_12506561 chr3L - chr3L_12507226_12507481 chr3L_12507225_12507226;chr3L_12507481_12507482 chr3L_12506981_12507225;chr3L_12507482_12507869 0.00 2.70 1.92 0.00 0.00 2.63 0.00 0.00 0.00 NA 0.00 1.20 4.26 0.00 0.00 3.12 0.00 0.00 0.00 2.11 3.33 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 NA 0.00 2.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 NA NA 0.00 0.00 0.00 5.88 0.00 0.00 NA 11.76 0.00 0.00 NA 0.00 K intron_retention br,I_chrX_1517022_1518170 chrX + chrX_1530583_1530671 chrX_1530582_1530583;chrX_1530671_1530672 chrX_1530129_1530582;chrX_1530672_1530945 0.00 0.00 0.00 0.00 0.00 0.00 9.09 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11376,I_chr2L_100704_100835 chr2L + chr2L_101620_101875 chr2L_101619_101620;chr2L_101875_101876 chr2L_101249_101619;chr2L_101876_101914 9.09 NA NA 6.25 NA NA 26.67 9.09 14.29 NA NA 6.25 NA NA NA 11.11 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 14.29 NA NA NA NA NA NA NA 17.65 NA NA NA 0.00 NA NA 11.11 NA NA NA NA NA NA NA 5.88 NA K intron_retention RpL27,I_chr3R_21510239_21510298,RI_chr3R_21510239_21510441,I_chr3R_21510239_21510464,I_chr3R_21510239_21510656,I_chr3R_21510239_21510726 chr3R - chr3R_21510239_21510746 chr3R_21510238_21510239;chr3R_21510746_21510747 chr3R_21510139_21510238;chr3R_21510747_21510756 2.40 NA 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 NA NA 0.00 13.33 0.00 0.00 0.00 2.94 0.00 0.00 NA 6.67 0.00 2.13 NA 26.09 17.39 11.76 3.12 0.00 0.00 3.57 NA NA 3.70 7.14 9.09 3.92 4.55 2.40 0.00 4.17 0.00 11.54 9.52 2.56 5.08 8.33 NA NA 3.12 NA 0.00 9.09 0.00 4.00 K intron_retention prominin-like,I_chr3L_3121200_3123087 chr3L - chr3L_3118980_3119042 chr3L_3118979_3118980;chr3L_3119042_3119043 chr3L_3118034_3118979;chr3L_3119043_3119152 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Dystrophin,noncoding_17759,I_chr3R_15289404_15290179 chr3R + chr3R_15289404_15290221;chr3R_15289437_15290221 chr3R_15289362_15290221 chr3R_15290222_15290279;chr3R_15289350_15289361 6.52 NA NA NA NA NA NA 4.35 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 17.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.70 NA NA NA NA NA NA NA NA NA K intron_retention R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083687_8089393 chr2L_8083686_8083687;chr2L_8089393_8089394 chr2L_8083422_8083686;chr2L_8089394_8089493 100.00 NA NA 93.33 NA NA 90.00 100.00 100.00 NA 90.91 100.00 90.00 NA NA 100.00 90.00 100.00 90.91 90.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 92.31 90.91 90.00 NA 100.00 93.33 87.50 100.00 87.50 NA NA 100.00 88.89 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA 100.00 N intron_retention PHGPx chr3L + chr3L_3326442_3327859 chr3L_3326441_3326442;chr3L_3327859_3327860 chr3L_3326438_3326441;chr3L_3327860_3328183 100.00 100.00 100.00 84.27 100.00 100.00 95.29 90.82 94.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.84 100.00 100.00 100.00 100.00 100.00 100.00 92.17 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.05 100.00 100.00 100.00 94.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.73 100.00 K alternative_acceptor par-6 chrX + chrX_17597401_17597580 chrX_17597401_17597461 chrX_17597362_17597400;chrX_17597581_17597758 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG7112 chr3L + chr3L_8342946_8342999 chr3L_8342945_8342946;chr3L_8342999_8343000 chr3L_8341849_8342945;chr3L_8343000_8343188 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 5.00 3.12 NA 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG7987,RI_chr3R_10400799_10401492 chr3R - chr3R_10400782_10401492 chr3R_10400781_10400782;chr3R_10401492_10401493 chr3R_10400699_10400781;chr3R_10401493_10401559 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA NA 5.26 5.56 0.00 0.00 4.55 NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 0.00 NA 8.70 NA 0.00 NA NA NA 0.00 6.06 NA 0.00 NA NA NA 0.00 NA NA NA K cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2814894;chr2R_2813804_2817753;chr2R_2813804_2816013 chr2R_2813804_2814174;chr2R_2814327_2816013,chr2R_2814327_2814894,chr2R_2814327_2817753 chr2R_2814175_2814326 chr2R_2813704_2813803;chr2R_2817754_2817762 97.67 95.74 100.00 89.29 96.55 100.00 97.06 96.36 98.77 100.00 96.55 98.57 95.24 100.00 97.56 95.00 100.00 100.00 92.68 98.04 96.43 98.00 97.83 97.40 97.50 95.45 98.31 95.00 97.30 97.22 100.00 97.92 94.92 98.33 100.00 95.24 97.75 98.15 95.00 96.88 98.18 100.00 96.67 96.72 96.00 97.67 92.73 98.51 94.74 100.00 98.55 95.45 100.00 98.39 97.56 98.68 97.87 98.39 K intron_retention CG17508,RI_chr2R_1496995_1497120 chr2R + chr2R_1496303_1496517 chr2R_1496302_1496303;chr2R_1496517_1496518 chr2R_1496153_1496302;chr2R_1496518_1496994 0.00 0.00 1.06 0.00 0.00 0.00 1.01 0.68 2.88 0.00 0.00 0.00 0.00 0.00 1.03 0.56 3.92 0.00 0.00 0.00 3.57 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 1.57 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention moody chrX - chrX_1941681_1943228 chrX_1941680_1941681;chrX_1943228_1943229 chrX_1941591_1941680;chrX_1943229_1944157 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 2.78 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K intron_retention Pax,RI_chr2L_19401373_19409403,RI_chr2L_19404683_19426205,RI_chr2L_19404823_19409403 chr2L - chr2L_19403717_19403998 chr2L_19403716_19403717;chr2L_19403998_19403999 chr2L_19403650_19403716;chr2L_19403999_19404682 52.83 52.83 64.10 40.74 67.74 57.58 56.36 78.57 65.93 34.38 72.00 45.78 86.21 65.85 53.06 63.04 60.00 50.00 74.29 26.92 50.00 56.32 36.11 50.00 20.37 12.50 53.45 65.79 14.04 51.02 59.57 47.37 38.46 64.71 55.88 57.58 54.17 37.78 40.58 53.73 8.51 59.26 72.73 42.50 15.38 44.00 33.33 37.78 62.96 46.15 60.94 51.72 33.33 32.14 73.17 32.14 53.57 41.67 K jcn_only_AD CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20824602_20825271;chr2L_20824725_20825271;chr2L_20824494_20825271 chr2L_20824631_20825271 chr2L_20825272_20825366;chr2L_20824482_20824493 48.28 NA NA NA NA NA 38.71 48.28 40.00 NA 34.62 NA NA NA NA 34.62 NA 54.17 NA 58.06 39.13 NA NA NA NA NA NA NA NA NA 47.62 64.29 61.36 NA NA NA NA NA NA 80.82 NA 18.52 NA NA 36.84 72.97 NA 82.54 40.91 NA NA NA NA NA 57.14 NA NA 94.44 K alternative_donor eIF5,noncoding_24049,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15885416_15885611;chrX_15885416_15885925;chrX_15885416_15885783 chrX_15885416_15885854 chrX_15885316_15885415;chrX_15885926_15885954 87.50 100.00 84.62 82.14 NA 87.50 90.00 85.71 78.79 NA 83.33 85.71 66.67 100.00 100.00 90.24 100.00 80.00 90.91 92.86 100.00 NA NA 85.71 NA 100.00 NA NA NA NA 80.00 NA NA 95.24 100.00 100.00 NA NA NA 90.00 85.71 81.82 100.00 83.33 NA 90.91 NA 85.71 85.71 71.43 100.00 NA NA NA 87.50 NA 83.33 91.67 K intron_retention CG3680,Pka-R1 chr3L + chr3L_20805771_20805825 chr3L_20805770_20805771;chr3L_20805825_20805826 chr3L_20805624_20805770;chr3L_20805826_20806432 0.00 0.00 0.00 14.29 0.00 0.00 1.67 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.84 0.00 0.00 0.00 2.27 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Bmcp,RI_chr3L_11714462_11715104 chr3L + chr3L_11714292_11714416 chr3L_11714291_11714292;chr3L_11714416_11714417 chr3L_11714020_11714291;chr3L_11714417_11714461 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 4.35 1.56 0.00 0.00 0.00 3.57 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG12576,RI_chrX_21878289_21882347,I_chrX_21882735_21882809,I_chrX_21882735_21883407,I_chrX_21882735_21883467,I_chrX_21882735_21883620,I_chrX_21882735_21883714 chrX - chrX_21882735_21883714;chrX_21882735_21883467;chrX_21882735_21883750 chrX_21882735_21882809 chrX_21882635_21882734;chrX_21883751_21883814 1.67 3.17 2.00 1.83 0.00 2.17 2.78 1.54 1.84 2.56 1.69 2.13 1.67 1.61 1.69 1.10 1.54 0.00 1.39 1.16 0.00 2.13 1.20 0.00 0.00 1.96 3.77 5.56 1.33 1.35 1.56 2.04 1.63 1.83 0.00 1.79 1.49 2.38 0.00 2.38 2.00 1.98 1.96 1.19 0.00 1.19 1.69 0.81 1.59 2.56 1.54 2.17 0.00 3.12 2.78 0.00 2.13 0.77 K intron_retention Nopp140,I_chr3L_21828330_21828566,I_chr3L_21828986_21829082 chr3L + chr3L_21827177_21827368 chr3L_21827176_21827177;chr3L_21827368_21827369 chr3L_21826280_21827176;chr3L_21827369_21827458 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG11779,CG5835,I_chr3R_14982264_14982380,I_chr3R_14982295_14982380 chr3R - chr3R_14982125_14982187 chr3R_14982124_14982125;chr3R_14982187_14982188 chr3R_14981587_14982124;chr3R_14982188_14982263 47.06 40.48 37.50 68.29 45.16 45.83 55.26 50.00 51.72 58.62 66.67 52.27 64.29 47.83 52.38 39.13 47.37 46.88 68.18 51.90 62.07 56.00 43.84 38.60 71.79 67.65 60.34 31.37 69.64 32.93 45.00 30.30 28.57 53.06 47.37 48.21 50.82 50.00 47.06 33.78 57.45 48.57 41.94 42.59 40.91 53.06 39.66 41.56 40.58 33.33 36.99 44.44 37.25 33.33 50.00 43.59 28.57 27.06 K intron_retention CG9203 chrX - chrX_15369195_15369256 chrX_15369194_15369195;chrX_15369256_15369257 chrX_15369072_15369194;chrX_15369257_15369421 26.32 NA NA 60.00 NA NA 38.89 23.08 24.00 NA NA 26.32 NA NA NA NA NA NA NA 20.00 NA NA 50.00 13.33 NA NA NA 13.33 70.00 NA 42.86 NA 18.75 25.00 NA 26.67 42.86 NA NA 17.65 NA 27.27 NA NA NA NA 21.43 NA 25.00 38.46 33.33 NA NA NA NA NA NA NA K intron_retention Grip71 chr2L + chr2L_18709128_18709186 chr2L_18709127_18709128;chr2L_18709186_18709187 chr2L_18708849_18709127;chr2L_18709187_18709481 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA NA NA 13.04 NA NA NA NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 3.23 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K alternative_last_exon CG5028 chr3R + chr3R_21508154_21509194 chr3R_21508154_21508779 chr3R_21509195_21509500 chr3R_21508780_21509158 chr3R_21508078_21508153 100.00 100.00 100.00 98.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 98.51 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 95.24 100.00 98.33 96.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 97.62 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 K intron_retention Hmu chr3R + chr3R_23114768_23114836 chr3R_23114767_23114768;chr3R_23114836_23114837 chr3R_23114443_23114767;chr3R_23114837_23115042 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.86 0.00 0.00 0.00 1.01 2.04 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Sr-CI chr2L + chr2L_4122584_4122708 chr2L_4122583_4122584;chr2L_4122708_4122709 chr2L_4122046_4122583;chr2L_4122709_4123478 1.01 0.65 0.46 1.31 0.48 1.78 1.04 2.02 1.10 3.51 0.76 1.14 1.38 1.18 2.49 0.72 1.41 0.71 0.91 0.84 0.00 1.19 1.55 1.16 0.47 0.36 2.69 1.17 0.76 0.44 1.05 0.00 0.00 1.01 0.53 0.62 0.85 1.02 1.15 1.16 0.99 0.99 1.39 0.00 0.00 1.55 1.10 1.53 0.92 1.32 1.45 0.45 0.00 0.00 0.98 1.15 1.04 1.01 K intron_retention trbd chr3R - chr3R_5532763_5532828 chr3R_5532762_5532763;chr3R_5532828_5532829 chr3R_5532614_5532762;chr3R_5532829_5533040 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention kuz,E_chr2L_13550294_13551106,CE_chr2L_13558833_13594255,F_chr2L_13635998_13637287,RI_chr2L_13636519_13636577,I_chr2L_13636762_13637287 chr2L + chr2L_13636214_13637287 chr2L_13636213_13636214;chr2L_13637287_13637288 chr2L_13636100_13636213;chr2L_13637288_13637387 34.66 30.77 60.00 40.00 NA 20.00 27.78 50.00 37.50 NA 14.29 72.73 NA NA 33.33 75.00 16.67 NA 33.33 72.73 23.53 31.91 28.57 36.00 42.86 NA 56.25 46.15 NA 88.24 NA NA 47.83 31.25 38.46 NA 28.57 27.78 31.82 NA NA 26.92 NA NA NA NA NA 70.00 24.14 36.36 33.33 NA NA NA 54.55 25.00 NA 66.67 K intron_retention CG34394,I_chr2L_3365674_3365965 chr2L - chr2L_3361444_3362442 chr2L_3361443_3361444;chr2L_3362442_3362443 chr2L_3360996_3361443;chr2L_3362443_3362718 93.75 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 68.57 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG42360,RI_chr2R_20495045_20495115,RI_chr2R_20497443_20497538 chr2R + chr2R_20496560_20496621 chr2R_20496560_20496612 chr2R_20496458_20496559;chr2R_20496622_20496816 100.00 NA NA 100.00 NA NA 100.00 87.50 90.91 NA NA 100.00 100.00 NA NA 100.00 NA NA 88.89 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 91.67 NA 87.50 NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 N cassette CG13900,I_chr3L_830745_830907 chr3L - chr3L_827002_827422 chr3L_827002_827181;chr3L_827237_827422 chr3L_827182_827236 chr3L_826946_827001;chr3L_827423_827469 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 82.29 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG8446 chr2R + chr2R_12084108_12084196 chr2R_12084107_12084108;chr2R_12084196_12084197 chr2R_12083895_12084107;chr2R_12084197_12084416 0.00 0.00 0.00 6.98 0.00 0.00 4.35 6.25 5.10 0.00 0.00 4.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 3.08 0.00 NA 1.75 0.00 0.00 8.11 22.22 21.43 5.88 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.41 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 4.76 0.00 0.00 0.00 1.32 0.00 K alternative_acceptor Gpo-1,I_chr2R_11747621_11747699,EI_chr2R_11747445_11747699,I_chr2R_11749758_11750187,I_chr2R_11756325_11756380 chr2R - chr2R_11748259_11750187;chr2R_11749758_11750187 chr2R_11748228_11750187 chr2R_11750188_11750219;chr2R_11748106_11748227 2.63 0.00 6.25 0.00 NA 7.14 8.57 0.00 0.00 5.56 0.00 2.63 7.14 7.69 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 2.38 4.88 2.86 0.00 2.70 0.00 4.00 0.00 4.76 4.35 4.35 0.00 0.00 0.00 3.33 6.25 2.86 0.00 3.45 4.17 0.00 2.38 3.12 2.63 2.63 0.00 0.00 6.67 2.99 3.23 7.14 0.00 6.25 3.85 0.00 6.67 K intron_retention Ncc69,I_chr3L_12364701_12364860 chr3L - chr3L_12366180_12366239 chr3L_12366179_12366180;chr3L_12366239_12366240 chr3L_12366070_12366179;chr3L_12366240_12366382 0.00 0.00 0.00 0.00 0.00 0.00 NA 5.00 3.92 21.43 NA 2.94 NA 0.00 0.00 0.00 0.00 0.00 3.03 1.92 0.00 NA 0.00 2.27 11.76 7.69 2.70 NA 7.69 4.00 4.35 0.00 0.00 2.27 0.00 13.04 0.00 0.00 4.17 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 3.45 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG6236 chr3R - chr3R_11153785_11153876 chr3R_11153813_11153876 chr3R_11153877_11153988;chr3R_11153649_11153784 1.35 0.00 0.00 1.92 NA 0.00 2.44 1.49 2.22 5.00 NA 0.00 NA NA 4.17 5.17 NA NA NA 1.87 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.74 3.12 0.00 4.65 1.69 1.35 1.72 3.12 1.64 0.00 NA 2.04 5.45 0.00 0.00 2.48 1.45 3.70 2.90 3.33 2.33 0.00 0.00 0.00 0.00 5.38 K alternative_donor Ptp10D,CEF_chrX_11516219_11517862,I_chrX_11516225_11516345 chrX + chrX_11516219_11517785;chrX_11516213_11517785;chrX_11516391_11517785 chrX_11516225_11517785 chrX_11517786_11518234;chrX_11516125_11516212 0.00 NA 0.00 0.00 NA 16.67 0.00 13.33 0.00 NA 0.00 10.00 14.29 14.29 14.29 0.00 0.00 40.00 12.50 0.00 NA NA 12.50 NA NA 20.00 NA NA NA NA 0.00 NA 11.11 0.00 16.67 NA NA NA NA NA NA 7.69 0.00 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 25.00 K alternative_acceptor kat-60L1,I_chr3R_1609253_1609777 chr3R + chr3R_1611104_1611163 chr3R_1611104_1611151 chr3R_1610912_1611103;chr3R_1611164_1611351 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention spz chr3R - chr3R_22892388_22894865 chr3R_22892387_22892388;chr3R_22894865_22894866 chr3R_22892330_22892387;chr3R_22894866_22895053 26.75 26.67 27.14 19.18 22.58 27.38 39.09 25.00 33.05 20.55 48.84 45.29 43.48 25.27 35.71 29.51 25.93 18.46 35.23 25.17 35.29 32.18 26.75 22.97 32.95 55.26 24.32 16.67 25.00 25.00 30.34 21.95 26.19 32.19 38.89 58.23 26.77 26.32 32.17 34.35 37.29 30.09 26.25 45.30 14.46 23.85 20.39 25.19 31.96 20.18 28.44 32.50 21.31 25.26 35.09 26.55 15.46 17.32 K jcn_only_AA Fibp,RI_chr3L_19810268_19810326 chr3L - chr3L_19809780_19809819;chr3L_19809775_19809819 chr3L_19809762_19809819 chr3L_19809820_19809920;chr3L_19809693_19809761 96.43 96.43 92.00 94.64 100.00 100.00 96.88 100.00 95.45 NA 95.65 97.44 NA 96.00 88.89 100.00 95.45 95.24 100.00 92.86 NA 100.00 93.10 97.37 NA 100.00 97.30 NA 100.00 NA 92.11 96.15 96.88 97.14 NA 100.00 96.55 100.00 95.35 91.89 NA 94.00 NA 90.91 95.65 100.00 100.00 92.68 100.00 100.00 94.12 95.00 NA 100.00 92.86 95.12 96.23 100.00 K intron_retention Moe,I_chrX_8774434_8775874,I_chrX_8774434_8791759 chrX - chrX_8774434_8792216 chrX_8774433_8774434;chrX_8792216_8792217 chrX_8774334_8774433;chrX_8792217_8792259 25.00 12.50 21.74 10.53 16.67 23.53 17.86 29.73 17.54 NA NA 29.55 23.08 26.09 31.58 26.32 23.53 20.00 30.00 34.88 NA NA 5.88 30.77 NA 19.05 38.46 30.77 NA 36.36 26.09 NA 38.46 33.33 NA 25.00 NA NA 14.29 24.00 NA 22.58 31.82 22.73 NA NA 13.33 57.14 33.33 NA 21.05 NA NA NA 30.00 NA NA NA K alternative_donor fz2 chr3L - chr3L_19153786_19163552;chr3L_19153786_19162943 chr3L_19153786_19163618 chr3L_19153719_19153785;chr3L_19163619_19163743 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Hsc70-3,I_chrX_11699076_11699138,I_chrX_11699076_11699158,I_chrX_11699076_11699260,EI_chrX_11699076_11699573,I_chrX_11699076_11700062 chrX - chrX_11699076_11699321 chrX_11699075_11699076;chrX_11699321_11699322 chrX_11698976_11699075;chrX_11699322_11699360 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.97 0.00 2.22 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 5.00 0.00 2.60 0.00 0.00 7.94 26.83 7.27 4.65 0.00 0.00 0.00 1.27 2.86 0.00 3.45 0.00 0.00 2.38 0.00 2.50 0.00 2.08 0.00 2.15 4.00 0.00 0.81 0.00 1.79 0.00 0.00 0.00 1.72 0.00 0.00 1.72 K intron_retention CG18604,I_chr2R_14589693_14590032 chr2R + chr2R_14589693_14590023 chr2R_14589692_14589693;chr2R_14590023_14590024 chr2R_14589593_14589692;chr2R_14590024_14590188 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 7.69 0.00 0.00 0.00 4.35 NA 2.63 NA 0.00 0.00 6.90 4.76 NA 0.00 10.53 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 8.57 0.00 0.00 13.04 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 3.85 2.78 NA 0.00 NA 0.00 5.88 0.00 NA K intron_retention AT25722,CG3376 chr2R + chr2R_20145999_20149448 chr2R_20145998_20145999;chr2R_20149448_20149449 chr2R_20145537_20145998;chr2R_20149449_20149631 2.74 1.83 3.79 3.80 1.37 1.48 4.23 4.36 3.21 0.00 0.88 4.44 4.39 4.49 2.23 3.17 5.45 5.56 1.64 2.61 0.98 12.68 4.38 2.99 0.00 3.14 4.11 0.00 4.29 2.74 1.09 3.39 2.33 2.74 1.83 1.01 2.44 3.96 3.10 3.97 2.60 3.02 3.10 7.83 0.00 3.38 0.76 5.63 1.97 0.00 4.49 2.60 1.94 0.00 1.67 1.71 0.00 4.23 K intron_retention GlcAT-P,I_chr3L_11172482_11172633 chr3L - chr3L_11172039_11172323 chr3L_11172038_11172039;chr3L_11172323_11172324 chr3L_11171748_11172038;chr3L_11172324_11172481 1.06 0.92 2.21 0.00 0.91 1.50 1.75 1.29 0.50 0.00 0.00 1.14 1.72 2.06 0.00 1.29 0.00 2.40 0.00 1.76 1.77 2.20 0.86 0.00 1.30 0.00 3.54 2.82 0.00 2.33 1.75 0.00 1.03 1.40 0.00 2.06 1.09 0.00 1.84 0.63 0.00 1.69 1.06 2.56 0.00 1.15 1.72 0.00 1.95 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 2.65 K intron_retention RpS28b,I_chrX_9448962_9449029 chrX + chrX_9448962_9449028 chrX_9448961_9448962;chrX_9449028_9449029 chrX_9448862_9448961;chrX_9449029_9449632 0.04 0.09 0.00 0.06 0.06 0.07 0.07 0.05 0.00 0.06 0.00 0.04 0.04 0.00 0.02 0.04 0.00 0.00 0.04 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.14 0.35 0.98 0.04 0.04 0.00 0.06 0.01 0.08 0.00 0.04 0.00 0.00 0.02 0.02 0.06 0.05 0.00 0.00 0.03 0.03 0.04 0.15 0.03 0.00 0.08 0.06 0.00 0.02 0.05 0.09 0.04 K intron_retention Sep1 chrX + chrX_21231057_21231182 chrX_21231056_21231057;chrX_21231182_21231183 chrX_21230798_21231056;chrX_21231183_21231548 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG42507,Trl,EI_chr3L_14750431_14750893,I_chr3L_14750431_14750985,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14750431_14750762;chr3L_14750431_14751007;chr3L_14750431_14750893;chr3L_14750431_14750583 chr3L_14750431_14750941 chr3L_14750331_14750430;chr3L_14751008_14751008 66.67 80.00 66.67 64.52 60.00 60.00 59.09 48.72 65.96 81.82 64.71 63.64 52.00 61.11 64.00 73.17 68.42 62.96 57.14 72.73 53.57 70.00 78.26 77.27 84.62 61.90 76.47 42.86 57.69 75.00 80.95 56.25 66.67 60.53 82.35 68.42 87.50 85.71 92.86 64.29 60.00 68.29 47.62 62.50 61.90 62.86 84.62 59.65 63.83 78.95 78.57 78.95 76.47 85.71 70.37 72.22 86.67 70.73 K intron_retention Cf2,I_chr2L_4882802_4882864 chr2L - chr2L_4882493_4882864 chr2L_4882492_4882493;chr2L_4882864_4882865 chr2L_4882368_4882492;chr2L_4882865_4882964 23.21 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA 41.18 33.33 NA NA NA NA NA 13.33 NA NA NA 33.33 NA NA NA NA NA NA 21.05 NA 21.43 NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA K intron_retention CG3437,CG3434 chr3L - chr3L_9449781_9449865 chr3L_9449780_9449781;chr3L_9449865_9449866 chr3L_9449479_9449780;chr3L_9449866_9450402 33.33 41.67 33.33 18.75 NA 25.00 45.00 33.33 25.81 NA 46.67 41.18 NA NA 40.00 43.75 NA NA NA 37.93 31.25 NA 17.65 7.69 NA NA NA NA NA 30.77 NA NA 43.75 37.50 NA 25.00 18.75 NA 13.33 42.86 NA 31.58 NA 23.53 46.15 35.71 NA 27.27 56.25 NA NA NA NA NA NA NA 30.77 47.06 K cassette CG17528,RI_chr2R_706735_711409,I_chr2R_706735_711443,I_chr2R_707374_711443 chr2R - chr2R_706735_711443;chr2R_706735_711409;chr2R_706735_711615 chr2R_706735_706792;chr2R_707442_711409,chr2R_707442_711615,chr2R_707442_711443 chr2R_706793_707441 chr2R_706635_706734;chr2R_711616_711627 100.00 98.15 96.72 88.06 100.00 100.00 99.03 99.09 100.00 100.00 98.04 100.00 98.33 98.33 98.44 97.94 100.00 100.00 100.00 99.26 97.87 100.00 100.00 98.51 100.00 100.00 98.55 96.43 100.00 100.00 98.53 100.00 100.00 99.17 97.62 97.87 98.18 100.00 100.00 98.82 100.00 99.18 100.00 100.00 96.67 100.00 100.00 98.55 100.00 97.50 100.00 100.00 100.00 100.00 100.00 97.44 97.67 100.00 K alternative_acceptor l(2)03709,I_chr2R_14707617_14707700,I_chr2R_14708048_14708095 chr2R + chr2R_14708789_14708997 chr2R_14708789_14708994 chr2R_14708689_14708788;chr2R_14708998_14709059 97.44 100.00 98.04 98.92 100.00 92.31 99.20 97.47 98.68 100.00 100.00 97.50 96.43 97.92 100.00 93.62 100.00 100.00 97.92 99.02 97.06 94.12 95.95 95.77 97.96 96.67 95.51 97.44 97.50 92.68 96.30 100.00 100.00 100.00 97.67 91.23 91.67 95.35 92.50 97.80 96.67 98.44 100.00 92.98 81.58 96.00 95.83 96.15 96.36 96.72 96.92 94.74 97.56 94.44 94.87 98.00 95.83 100.00 K intron_retention Pect,I_chr2L_13207997_13208109,E_chr2L_13208285_13210076 chr2L + chr2L_13209360_13209471 chr2L_13209359_13209360;chr2L_13209471_13209472 chr2L_13209266_13209359;chr2L_13209472_13209485 91.67 89.47 94.44 98.36 100.00 94.44 100.00 94.87 93.33 NA 94.12 90.91 80.00 87.50 95.00 89.74 91.67 100.00 86.21 92.11 87.50 91.67 81.48 94.44 92.31 95.65 84.00 80.95 87.50 90.91 88.46 NA 91.67 97.06 77.78 NA 84.62 88.89 77.78 82.61 92.86 89.47 95.00 94.74 90.00 93.33 93.33 88.89 95.35 90.00 82.76 87.50 NA 90.00 92.31 86.67 93.33 100.00 K jcn_only_AD sec23,I_chr3R_1474873_1475080,I_chr3R_1477727_1478102 chr3R + chr3R_1477525_1478102 chr3R_1477724_1478102 chr3R_1478103_1478202 4.82 6.93 4.23 4.41 11.17 4.76 2.61 4.11 4.34 3.23 3.51 13.78 23.28 5.65 3.80 2.64 4.47 13.04 7.60 6.17 3.68 21.11 4.34 7.49 10.20 2.94 6.19 8.73 3.81 4.97 4.63 6.49 7.05 2.29 7.69 2.14 6.57 4.82 8.08 0.85 7.89 3.82 2.42 2.66 5.08 6.23 5.58 1.10 3.64 10.35 3.75 7.08 3.02 5.17 2.74 5.34 4.99 3.25 K intron_retention CG31158,CG31159 chr3R + chr3R_18414141_18424940 chr3R_18414140_18414141;chr3R_18424940_18424941 chr3R_18413477_18414140;chr3R_18424941_18425007 0.00 0.00 0.00 0.00 NA 0.00 5.56 0.00 0.00 0.00 0.00 8.33 NA 12.50 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 4.55 0.00 0.00 NA 0.00 0.00 0.00 6.67 0.00 NA 4.65 0.00 7.41 4.00 0.00 0.00 4.44 0.00 11.76 0.00 NA 0.00 0.00 0.00 0.00 5.26 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA alpha-Cat,I_chr3L_23319861_23321813,I_chr3L_23327841_23328002 chr3L - chr3L_23312573_23318741 chr3L_23312575_23318741 chr3L_23318742_23318923;chr3L_23312334_23312572 100.00 98.11 96.30 98.44 100.00 100.00 96.90 98.50 99.22 100.00 100.00 100.00 96.43 100.00 100.00 99.37 100.00 100.00 97.12 97.30 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 96.55 100.00 100.00 100.00 100.00 98.48 98.00 100.00 100.00 NA NA 100.00 98.11 99.08 98.82 97.96 100.00 98.70 100.00 95.52 97.44 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 97.14 K jcn_only_AA CG8043,CG11755 chr3R + chr3R_4502770_4502817;chr3R_4502770_4502834;chr3R_4502770_4502843 chr3R_4502770_4502810 chr3R_4502645_4502769;chr3R_4502844_4503955 0.00 NA 0.00 3.45 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 N jcn_only_AD CG5646,I_chr3R_23386287_23386484 chr3R - chr3R_23385937_23386017 chr3R_23385937_23385995 chr3R_23385868_23385936;chr3R_23386018_23386080 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 89.74 100.00 100.00 100.00 NA 100.00 100.00 100.00 K alternative_acceptor Rpb4 chr3R - chr3R_14080914_14081038;chr3R_14080814_14081038 chr3R_14080959_14081038 chr3R_14081039_14081173;chr3R_14080097_14080813 11.11 12.50 9.09 18.18 20.00 0.00 0.00 11.11 21.43 NA 14.29 14.29 16.67 0.00 16.67 10.00 14.29 12.50 18.18 5.26 11.11 0.00 0.00 9.09 0.00 28.57 18.18 16.67 NA 0.00 13.04 0.00 14.29 0.00 14.29 20.00 9.09 12.50 15.38 13.33 NA 6.25 NA 0.00 0.00 0.00 12.50 10.00 11.11 10.00 6.67 11.11 0.00 9.09 18.18 0.00 0.00 12.50 K intron_retention Met chrX + chrX_11510403_11510756 chrX_11510402_11510403;chrX_11510756_11510757 chrX_11510159_11510402;chrX_11510757_11512193 95.84 NA NA NA NA NA 100.00 91.67 100.00 NA NA NA NA NA NA 91.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 80.00 88.89 NA NA NA NA NA NA NA NA NA K intron_retention drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9384657_9384872 chr2R_9384656_9384657;chr2R_9384872_9384873 chr2R_9382757_9384656;chr2R_9384873_9385038 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.52 0.46 0.81 0.59 0.53 0.61 0.00 0.58 0.00 0.00 1.77 0.00 2.87 2.38 1.81 1.28 0.00 0.84 1.47 0.43 1.28 1.16 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.90 0.00 2.03 0.90 0.63 0.00 0.00 0.00 1.30 0.91 1.32 0.00 1.63 N alternative_acceptor CG6664 chr3L - chr3L_17007987_17008086 chr3L_17008005_17008086 chr3L_17008087_17008177;chr3L_17007093_17007986 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 72.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG3608 chr2R + chr2R_20500970_20501030 chr2R_20500969_20500970;chr2R_20501030_20501031 chr2R_20500901_20500969;chr2R_20501031_20501099 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.70 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 2.56 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 K cassette I_chr3L_1494947_1496080,pUf68,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345 chr3L - chr3L_1499338_1501350;chr3L_1499880_1501350;chr3L_1499880_1501798;chr3L_1499338_1501798;chr3L_1499338_1501345 chr3L_1499338_1500244,chr3L_1499880_1500244;chr3L_1500389_1501350,chr3L_1500389_1501798,chr3L_1500389_1501345 chr3L_1500245_1500388 chr3L_1499043_1499337;chr3L_1501799_1501892 14.00 8.11 12.28 23.38 6.00 10.00 0.00 22.50 13.86 19.15 29.73 23.36 42.31 12.90 10.84 13.51 9.43 8.33 10.67 15.53 17.50 19.35 17.81 16.39 19.15 9.76 17.91 20.69 11.76 14.00 24.74 9.43 17.02 12.00 16.39 27.91 11.11 9.52 14.67 10.00 17.31 11.71 8.93 23.88 15.87 13.92 15.52 10.28 10.62 12.68 14.63 15.52 6.52 18.42 14.29 17.39 12.50 10.67 K jcn_only_AD CG7458 chr3L + chr3L_21948960_21949479 chr3L_21948986_21949479 chr3L_21949480_21949583;chr3L_21948713_21948959 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 K intron_retention Su(dx),RE_chr2L_2038009_2039919,CG31672 chr2L + chr2L_2041574_2041646 chr2L_2041573_2041574;chr2L_2041646_2041647 chr2L_2040422_2041573;chr2L_2041647_2042569 0.00 0.00 0.00 5.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD arr,I_chr2R_9343426_9343486,I_chr2R_9347031_9370659 chr2R - chr2R_9369590_9370659 chr2R_9369590_9370634 chr2R_9369281_9369589;chr2R_9370660_9370692 4.55 NA NA NA NA NA NA NA 4.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention didum,I_chr2R_3393005_3393348 chr2R + chr2R_3390534_3391153 chr2R_3390533_3390534;chr2R_3391153_3391154 chr2R_3390307_3390533;chr2R_3391154_3391267 7.18 12.50 18.75 NA 5.00 6.25 9.09 26.67 11.11 NA 0.00 10.00 NA NA 12.50 15.38 NA 0.00 NA 8.33 NA NA 0.00 13.04 NA NA 5.56 NA 11.76 18.75 0.00 NA 0.00 0.00 NA NA 0.00 0.00 6.67 10.34 NA 7.69 NA NA NA NA NA NA 5.00 NA 0.00 NA NA NA NA NA NA NA K jcn_only_AA Mocs1 chr3L + chr3L_11065511_11065569;chr3L_11065511_11065549 chr3L_11065511_11065661 chr3L_11064659_11065510;chr3L_11065662_11066454 28.75 37.50 27.59 24.44 NA 22.58 20.37 33.33 26.98 36.11 38.10 23.91 40.00 NA 28.12 14.63 10.00 13.79 25.71 34.62 55.00 32.58 32.65 37.14 20.00 29.41 40.35 33.33 38.46 17.54 33.33 24.29 11.11 21.62 36.00 45.45 20.51 36.11 35.29 27.27 28.92 23.53 NA 20.29 30.43 37.10 32.00 27.27 34.04 25.00 31.48 23.08 NA NA 27.59 24.14 36.59 28.57 K jcn_only_AA Lasp,I_chr3L_16671761_16673911,I_chr3L_16671780_16671907,RI_chr3L_16674471_16704042 chr3L - chr3L_16671761_16671907 chr3L_16671780_16671907 chr3L_16671908_16672007;chr3L_16671680_16671760 0.00 0.36 0.00 0.37 0.00 0.52 0.00 0.36 0.00 0.47 0.00 0.00 0.00 0.70 0.00 0.46 0.66 0.00 0.00 0.00 0.00 0.00 0.18 0.25 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 K alternative_donor CG33090,CEI_chr2L_14342636_14342777 chr2L + chr2L_14341577_14342777 chr2L_14342636_14342777 chr2L_14342778_14342877;chr2L_14341307_14341576 6.25 11.11 5.56 10.00 6.67 6.25 19.05 15.00 8.82 6.25 6.67 13.79 11.11 20.00 7.41 12.00 7.14 5.56 12.50 8.33 6.67 4.55 5.26 4.55 5.88 4.76 3.57 5.26 0.00 3.85 11.11 0.00 2.00 14.29 5.88 4.55 3.23 4.35 2.94 6.45 6.67 7.89 18.18 4.76 0.00 5.88 5.56 3.45 7.89 7.69 6.25 13.33 7.69 5.88 6.67 4.76 6.25 0.00 K intron_retention lig,CI_chr2R_3962006_3962916,I_chr2R_3962357_3962977,RI_chr2R_3962875_3962977 chr2R + chr2R_3962006_3962977 chr2R_3962005_3962006;chr2R_3962977_3962978 chr2R_3961906_3962005;chr2R_3962978_3963016 0.28 0.00 0.89 1.53 1.01 0.55 1.39 0.58 0.55 0.00 0.00 0.00 0.00 0.58 0.00 0.72 0.00 0.00 0.87 0.20 0.46 0.80 1.09 0.00 0.64 0.00 0.00 1.80 0.00 1.15 0.00 0.00 0.43 0.00 0.52 0.00 0.64 0.00 0.28 0.00 0.00 0.44 0.67 0.98 0.00 0.00 0.00 0.00 0.85 0.00 0.94 0.00 0.69 0.00 0.74 0.45 0.00 0.88 K intron_retention l(2)35Bg chr2L - chr2L_15038551_15038639 chr2L_15038550_15038551;chr2L_15038639_15038640 chr2L_15038054_15038550;chr2L_15038640_15038840 0.55 2.33 1.23 1.46 0.00 2.15 2.82 2.26 1.20 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 1.35 0.00 0.54 0.00 2.05 0.00 0.00 1.01 0.00 2.41 4.05 0.00 0.00 0.00 1.94 0.00 1.83 0.00 0.87 0.00 0.83 0.00 0.97 2.68 0.55 0.00 0.00 0.00 0.61 1.00 0.00 1.91 0.73 0.59 0.99 0.00 1.14 0.00 0.85 0.87 0.00 K jcn_only_AD CG3631 chr3R + chr3R_10705805_10705885;chr3R_10705766_10705885 chr3R_10705801_10705885 chr3R_10705886_10706516;chr3R_10705554_10705765 36.36 NA NA NA NA NA 36.36 NA 36.36 NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA K cassette CaMKI,I_chr4_467862_471815,I_chr4_471136_473243,I_chr4_472116_472527,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_471136_473243 chr4_471136_471815;chr4_472116_473243 chr4_471816_472115 chr4_471036_471135;chr4_473244_473337 100.00 95.45 96.55 85.37 93.33 100.00 100.00 98.15 100.00 100.00 100.00 97.30 100.00 96.15 100.00 97.62 100.00 95.65 100.00 100.00 100.00 94.12 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 93.33 98.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 97.83 100.00 93.75 100.00 100.00 100.00 100.00 98.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG11009,I_chr3L_12844823_12845526,I_chr3L_12845441_12845526 chr3L + chr3L_12845378_12845529 chr3L_12845378_12845526 chr3L_12845344_12845377;chr3L_12845530_12845621 96.00 95.12 95.08 94.92 97.14 91.84 95.24 95.12 95.73 NA 98.08 95.35 94.95 97.14 95.92 94.74 95.52 95.45 97.92 99.06 85.00 96.05 100.00 96.43 97.30 96.55 96.61 87.88 100.00 100.00 94.21 97.30 92.71 95.24 90.91 93.22 96.88 97.06 92.86 98.10 96.03 97.44 96.77 95.77 99.21 96.00 96.67 97.70 92.94 96.09 95.45 94.12 NA 93.55 100.00 85.48 98.48 98.84 K intron_retention CG5118 chr2L - chr2L_1171644_1171713 chr2L_1171643_1171644;chr2L_1171713_1171714 chr2L_1171030_1171643;chr2L_1171714_1171913 6.99 7.55 6.00 8.22 4.35 4.44 12.50 3.33 6.99 7.41 5.56 7.46 6.90 7.32 6.35 8.70 8.70 11.11 8.62 9.09 7.50 0.00 6.85 9.26 11.11 4.44 9.21 8.70 4.35 0.00 18.31 0.00 6.25 8.24 5.00 4.35 5.00 6.25 6.67 6.06 8.82 9.28 10.64 6.06 2.63 7.41 7.69 2.13 8.99 9.52 9.86 11.76 0.00 1.75 5.63 10.34 6.33 3.17 K alternative_donor CG9766 chr3R - chr3R_96077_103350 chr3R_96077_103167 chr3R_95831_96076;chr3R_103351_103355 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K mutually_exclusive trx chr3R - chr3R_10101091_10104814,chr3R_10105264_10111930 chr3R_10101091_10102027,chr3R_10103265_10111930 chr3R_10104815_10105263 chr3R_10102028_10103264 chr3R_10099914_10101090;chr3R_10111931_10112601 33.33 50.00 63.64 33.33 25.00 25.00 30.77 12.50 28.57 40.00 33.33 28.57 50.00 50.00 50.00 33.33 50.00 22.22 25.00 50.00 42.86 12.82 50.00 66.67 40.00 25.00 33.33 20.00 25.00 33.33 40.00 25.00 33.33 20.00 28.57 40.00 17.65 50.00 44.44 14.29 50.00 66.67 40.00 16.67 25.00 33.33 50.00 25.00 50.00 25.00 22.22 50.00 50.00 50.00 50.00 50.00 50.00 25.00 K jcn_only_AA Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5006553_5008568;chr2R_5006553_5008282;chr2R_5006553_5008598 chr2R_5006553_5007804 chr2R_5006405_5006552;chr2R_5008599_5008637 27.27 NA NA NA NA NA NA NA 9.52 NA NA 71.83 NA NA NA NA NA NA NA 12.50 NA NA 23.33 39.13 28.00 NA NA NA NA NA NA NA 23.81 NA NA NA 25.81 28.12 42.86 16.67 NA 27.27 NA 50.00 36.36 NA NA NA NA NA 17.39 NA NA NA NA 28.57 13.64 NA K intron_retention caz,noncoding_24110,RI_chrX_16183147_16183258,RI_chrX_16183356_16185973 chrX + chrX_16183356_16185089 chrX_16183355_16183356;chrX_16185089_16185090 chrX_16183259_16183355;chrX_16185090_16185124 5.59 7.23 10.87 6.48 7.41 2.99 16.67 13.43 13.27 2.86 16.13 10.17 19.23 15.56 3.85 16.28 8.93 6.74 12.24 6.56 4.55 5.59 5.00 4.23 5.71 8.51 7.41 4.58 4.95 3.90 8.33 1.88 2.50 13.04 2.80 3.88 2.55 3.70 2.22 3.88 3.12 5.26 4.26 6.25 0.49 7.41 4.17 6.32 11.11 1.12 3.33 6.90 3.96 4.29 8.22 3.90 6.90 4.42 K alternative_acceptor CG7995,EF_chr3L_1739282_1743211 chr3L + chr3L_1738745_1743211 chr3L_1738745_1743207 chr3L_1738599_1738744;chr3L_1743212_1743311 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA 100.00 NA 90.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 K jcn_only_AD I_chrX_7993650_7995126,Gclc chrX - chrX_8009614_8010024 chrX_8009614_8009706 chrX_8009450_8009613;chrX_8010025_8010150 2.34 2.75 6.25 3.57 5.17 5.88 3.05 2.34 3.39 0.00 5.45 5.82 3.66 0.93 4.65 1.82 4.21 1.69 0.94 3.33 3.23 0.24 2.15 0.60 1.63 3.85 2.36 3.17 1.85 1.08 2.31 1.23 1.61 3.66 0.67 2.07 0.64 0.52 3.39 2.19 0.00 5.03 4.11 0.36 7.41 2.50 2.68 0.83 5.48 4.07 1.96 5.07 4.17 1.39 2.27 2.02 0.74 1.85 K alternative_last_exon Pde1c,I_chr2L_11838774_11925541 chr2L - chr2L_11816707_11817352 chr2L_11817110_11817352 chr2L_11814144_11816706 chr2L_11816793_11817109 chr2L_11817353_11818493 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.00 0.00 0.00 0.00 0.00 0.00 50.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG17598 chrX - chrX_21938828_21939091 chrX_21938831_21939091 chrX_21939092_21940557;chrX_21938690_21938827 97.87 100.00 100.00 98.63 95.92 97.44 100.00 98.17 97.22 95.95 100.00 97.44 93.44 100.00 95.77 98.48 97.83 98.33 97.87 98.70 98.08 100.00 97.53 97.94 97.14 100.00 96.34 91.55 98.82 98.81 96.43 97.03 97.87 98.63 97.18 100.00 100.00 97.53 96.64 97.64 96.55 93.94 93.33 96.47 100.00 98.65 100.00 96.97 96.04 98.51 97.96 100.00 96.88 98.86 100.00 99.19 97.41 96.12 K alternative_donor CG8468 chr2R + chr2R_10107616_10108112;chr2R_10107548_10108112;chr2R_10107621_10108112 chr2R_10107651_10108112 chr2R_10108113_10108270;chr2R_10107405_10107547 9.41 9.52 8.28 10.63 12.36 10.14 16.44 10.58 10.20 8.33 14.78 8.13 10.74 12.34 8.63 15.15 11.28 10.79 12.15 17.05 9.09 5.97 6.00 9.45 17.81 15.08 13.51 8.43 6.25 1.95 10.16 3.47 3.09 9.41 12.08 12.61 11.65 6.14 12.73 6.86 6.72 8.60 14.96 7.18 5.19 9.59 6.34 4.55 8.65 6.58 8.72 14.08 6.82 7.41 12.50 7.63 5.68 5.78 K intron_retention Csp,RI_chr3L_22262215_22262452,I_chr3L_22264863_22266536,I_chr3L_22273037_22275661 chr3L + chr3L_22263021_22264013 chr3L_22263020_22263021;chr3L_22264013_22264014 chr3L_22262889_22263020;chr3L_22264014_22264076 11.49 12.99 5.26 13.79 21.74 13.95 17.44 8.82 11.32 15.25 14.04 15.45 13.89 13.64 12.86 7.69 10.87 16.95 13.73 8.33 6.56 8.84 8.70 10.19 8.93 6.56 12.90 16.67 11.46 11.22 7.84 20.63 15.27 7.37 8.97 4.94 6.52 8.33 11.19 10.16 15.29 10.79 15.79 8.33 15.29 10.75 11.49 12.09 15.89 17.39 9.47 13.33 13.92 11.11 12.28 9.86 15.73 17.76 K intron_retention CG4351 chrX - chrX_12992626_12994917 chrX_12992625_12992626;chrX_12994917_12994918 chrX_12992470_12992625;chrX_12994918_12995574 0.00 NA 0.00 NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA 0.00 0.00 0.00 6.67 NA NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 3.70 NA NA NA 0.00 NA 0.00 0.00 NA 4.00 NA 0.00 NA NA NA NA 0.00 K intron_retention CG3662,I_chr2L_822032_822857 chr2L + chr2L_824138_824190 chr2L_824137_824138;chr2L_824190_824191 chr2L_823637_824137;chr2L_824191_824354 96.75 100.00 91.57 98.80 97.78 96.83 96.62 95.67 97.48 97.67 97.73 95.72 96.75 96.09 95.45 96.39 100.00 98.46 96.46 96.86 89.39 71.26 99.21 93.81 95.00 98.67 95.24 98.04 96.67 94.05 92.47 98.08 98.08 97.01 92.94 98.28 98.33 98.18 88.64 94.71 97.66 95.09 91.86 93.18 97.04 99.15 95.51 98.01 96.77 95.73 96.26 94.81 98.73 97.54 95.15 98.15 95.04 98.30 K intron_retention hipk,RI_chr3L_548068_552227 chr3L + chr3L_546199_547481 chr3L_546198_546199;chr3L_547481_547482 chr3L_546192_546198;chr3L_547482_547580 0.00 4.76 0.00 2.70 NA 0.00 5.26 4.48 2.04 NA 0.00 6.90 0.00 0.00 0.00 2.30 0.00 0.00 2.27 0.00 0.00 9.09 0.00 NA NA 11.11 6.67 NA NA NA 3.45 NA NA 0.00 0.00 NA NA NA NA 5.00 NA 4.55 0.00 0.00 NA NA NA 0.00 0.00 NA 3.23 NA NA NA 3.45 NA NA NA K jcn_only_AA CG8889 chr2R - chr2R_7914078_7914227 chr2R_7914105_7914227 chr2R_7914228_7914347;chr2R_7914036_7914077 4.01 NA NA 0.00 NA NA 4.17 3.85 0.00 NA NA 0.00 NA NA NA 7.69 NA NA NA 7.41 NA 14.29 5.00 NA NA NA 0.00 NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA 11.54 NA NA 0.00 NA 0.00 NA NA NA NA 0.00 NA NA K jcn_only_AA Df31,EI_chr2L_21628210_21629715,REI_chr2L_21628210_21629884 chr2L - chr2L_21628210_21629884 chr2L_21629777_21629884 chr2L_21629885_21629918 71.96 NA NA 85.00 NA NA NA NA 70.59 88.00 NA 62.96 NA NA NA 92.00 NA NA NA 81.48 NA NA NA NA NA NA NA NA NA NA NA NA NA 73.33 NA NA NA NA NA 60.23 NA 73.53 NA 66.67 64.00 NA NA 37.50 84.09 NA NA NA NA NA NA NA NA 62.96 K alternative_donor CG8494 chr2R + chr2R_10127619_10127715 chr2R_10127624_10127715 chr2R_10127716_10128082;chr2R_10127505_10127618 0.00 0.00 NA 0.00 NA NA 5.56 0.00 4.35 NA NA 3.85 NA NA NA NA NA NA NA 0.00 NA 4.00 2.63 0.00 0.00 NA 10.53 NA 0.00 0.00 7.69 0.00 NA 3.85 NA 0.00 0.00 0.00 0.00 3.70 NA 0.00 NA 5.56 NA 4.55 NA NA 0.00 7.14 2.38 NA 0.00 6.67 NA NA NA NA N jcn_only_AD shep,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5155711_5156456 chr3L_5155711_5156066 chr3L_5155556_5155710 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.66 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.40 100.00 100.00 100.00 K jcn_only_AD scrib,I_chr3R_22362324_22363015,I_chr3R_22381374_22399575,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22362244_22363092;chr3R_22362120_22363092;chr3R_22362315_22363092;chr3R_22362254_22363092;chr3R_22362224_22363092;chr3R_22362324_22363092 chr3R_22362142_22363092 chr3R_22363093_22363115;chr3R_22362112_22362119 3.85 2.56 4.76 5.36 5.00 4.55 4.17 4.32 4.89 1.89 7.32 4.49 4.00 6.74 3.06 0.92 5.68 2.22 1.01 4.42 5.81 2.52 3.23 4.04 9.38 3.75 0.00 4.05 5.04 1.42 3.12 1.35 4.61 1.39 3.05 4.76 5.95 7.46 6.74 1.89 4.04 1.70 1.22 3.92 2.99 6.48 3.85 2.80 6.33 2.08 2.46 1.43 2.33 0.00 6.61 0.00 0.00 3.23 K intron_retention RpL14,snoRNA:U49:66Db chr3L + chr3L_8594943_8595202 chr3L_8594942_8594943;chr3L_8595202_8595203 chr3L_8594748_8594942;chr3L_8595203_8595483 0.00 0.00 0.00 0.02 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.03 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.02 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9839 chr3R - chr3R_4630849_4630913 chr3R_4630848_4630849;chr3R_4630913_4630914 chr3R_4629180_4630848;chr3R_4630914_4631449 6.06 4.65 6.67 16.67 0.00 10.00 6.67 2.13 6.59 0.00 0.00 9.46 5.77 2.86 8.33 0.00 17.86 5.71 0.00 2.63 6.06 6.25 5.00 12.82 8.00 4.65 8.33 25.00 10.81 0.00 4.17 6.25 10.00 12.00 0.00 0.00 2.27 0.00 0.00 8.89 3.45 7.89 3.57 9.68 12.50 8.16 2.56 9.30 7.55 7.14 0.00 11.11 6.67 0.00 5.00 5.56 10.34 4.76 K jcn_only_AA GstD10,RI_chr3R_8191329_8191412,I_chr3R_8192634_8193249 chr3R - chr3R_8191305_8191412 chr3R_8191329_8191412 chr3R_8191413_8191512;chr3R_8191229_8191304 13.64 NA NA 13.64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Ank,RI_chr4_144049_144406,I_chr4_144066_144410,I_chr4_150069_150423 chr4 - chr4_144049_144410 chr4_144049_144406 chr4_143966_144048;chr4_144411_144506 8.14 9.62 5.69 8.68 9.17 7.01 9.39 5.66 5.68 15.38 5.59 10.20 2.91 8.70 13.45 7.36 5.88 8.39 5.91 7.02 11.36 7.81 8.05 5.88 12.90 12.15 18.44 7.14 20.51 8.16 16.26 8.70 16.38 7.18 13.11 10.23 5.38 7.94 2.38 2.21 16.13 8.70 7.95 0.91 NA 12.07 9.09 5.84 7.98 NA 7.08 4.30 0.00 NA 8.13 10.00 11.11 10.00 K jcn_only_AA CG8949,I_chrX_16964662_16964766,I_chrX_16971501_16971713 chrX - chrX_16964656_16964778 chrX_16964662_16964778 chrX_16964779_16964866;chrX_16964562_16964655 89.84 89.69 93.06 96.46 96.36 89.23 94.94 91.25 89.39 81.25 83.61 93.71 93.33 87.72 90.79 89.66 91.80 94.92 93.88 89.93 94.64 88.35 91.61 92.45 95.28 87.93 89.32 88.89 77.78 89.61 87.91 90.48 88.61 91.40 91.55 91.25 89.09 88.00 89.84 89.29 92.50 92.75 95.65 89.72 89.04 92.77 89.53 89.47 87.25 89.38 95.69 89.86 85.00 88.89 88.73 90.77 93.06 79.10 K intron_retention msps,I_chr3R_11877071_11877796 chr3R + chr3R_11883112_11883273 chr3R_11883111_11883112;chr3R_11883273_11883274 chr3R_11883058_11883111;chr3R_11883274_11883487 5.63 NA 0.00 0.00 5.26 NA NA 14.29 20.69 0.00 NA 6.67 NA 28.57 NA 9.09 NA 0.00 NA 3.57 NA 3.03 12.00 0.00 NA NA 0.00 7.69 NA 5.56 17.65 12.50 9.09 21.05 12.50 0.00 3.03 0.00 0.00 20.00 NA NA NA 9.09 NA 0.00 NA 5.71 15.00 NA 5.26 7.69 NA NA NA 0.00 NA NA K alternative_acceptor CG42390 chr3R + chr3R_17957065_17957822 chr3R_17957065_17957292 chr3R_17956965_17957064;chr3R_17957823_17957966 6.67 NA NA NA NA NA NA NA 6.67 NA NA 10.00 NA NA NA NA NA NA NA NA NA 11.63 7.69 5.88 7.69 NA 6.67 0.00 8.00 9.09 NA 7.69 8.70 NA 0.00 10.53 4.55 NA 0.00 7.41 0.00 NA NA 0.00 5.56 4.55 7.14 0.00 NA 9.38 9.52 NA NA 6.25 NA 11.76 5.56 4.76 K intron_retention RpS4,snoRNA:Psi28S-3327a,snoRNA:Psi28S-3327b,Syx13,RI_chr3L_13037959_13038017,CG11279 chr3L + chr3L_13035640_13036265 chr3L_13035639_13035640;chr3L_13036265_13036266 chr3L_13035542_13035639;chr3L_13036266_13036437 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.04 0.04 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.02 0.00 0.00 0.01 0.00 0.00 0.00 0.03 0.03 0.07 0.03 0.03 0.03 0.00 0.00 0.00 0.00 0.00 0.01 0.02 K intron_retention CG31211 chr3R + chr3R_7777548_7777903 chr3R_7777547_7777548;chr3R_7777903_7777904 chr3R_7777445_7777547;chr3R_7777904_7777960 34.62 33.33 39.29 44.68 26.32 26.67 43.75 40.82 37.78 16.67 31.58 34.55 41.94 39.29 28.95 47.22 39.13 38.46 43.75 39.47 31.82 35.71 39.13 46.15 30.77 50.00 47.62 41.67 21.43 29.63 40.54 35.00 17.24 38.00 38.89 60.00 34.48 33.33 31.25 41.67 34.62 38.78 33.33 34.62 28.00 25.00 33.33 24.44 30.23 26.67 34.62 29.41 19.05 19.05 46.15 33.33 23.33 23.40 K intron_retention I_chr3L_1494947_1496080,pUf68,psnoRNA:pUf68-a,RI_chr3L_1499880_1501350 chr3L - chr3L_1498797_1499042 chr3L_1498796_1498797;chr3L_1499042_1499043 chr3L_1498293_1498796;chr3L_1499043_1499337 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pabp2,I_chr2R_4020297_4020426 chr2R + chr2R_4018994_4019087 chr2R_4018993_4018994;chr2R_4019087_4019088 chr2R_4018991_4018993;chr2R_4019088_4019228 94.74 95.00 94.12 96.43 100.00 94.44 92.50 97.67 98.21 NA 100.00 97.96 91.30 92.86 100.00 93.62 100.00 94.74 94.12 96.30 87.50 93.75 94.44 94.12 100.00 94.44 100.00 90.00 100.00 88.89 96.15 NA 88.89 92.00 100.00 NA 94.74 92.86 90.91 94.74 90.00 100.00 96.30 91.67 100.00 91.67 93.75 94.74 92.45 100.00 94.74 100.00 100.00 NA 92.59 100.00 100.00 100.00 K intron_retention Nup98 chr3R - chr3R_19601187_19601243 chr3R_19601186_19601187;chr3R_19601243_19601244 chr3R_19600777_19601186;chr3R_19601244_19602255 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 K intron_retention CG5323 chr2R + chr2R_14502978_14503074 chr2R_14502977_14502978;chr2R_14503074_14503075 chr2R_14502813_14502977;chr2R_14503075_14503504 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9172,eIF5,EI_chrX_15885411_15885854 chrX - chrX_15880720_15880770 chrX_15880719_15880720;chrX_15880770_15880771 chrX_15879877_15880719;chrX_15880771_15880778 7.89 12.50 9.38 6.12 8.00 8.33 7.27 1.67 3.39 6.25 6.90 9.09 14.29 7.41 11.90 7.89 6.25 7.14 8.82 6.74 7.69 0.00 14.29 0.00 14.29 11.76 25.00 36.36 35.00 10.53 11.43 26.32 19.35 4.08 10.00 11.76 0.00 5.00 9.09 8.57 17.39 5.00 0.00 0.00 8.70 12.12 0.00 15.62 7.02 0.00 0.00 0.00 NA NA 2.38 0.00 3.85 14.58 N alternative_acceptor RI_chrX_22094836_22142377,noncoding_25169 chrX + chrX_22120111_22120222 chrX_22120111_22120219 chrX_22120097_22120110;chrX_22120223_22120518 5.26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 10.53 K alternative_donor CG32163 chr3L + chr3L_16580506_16580609;chr3L_16580348_16580609 chr3L_16580557_16580609 chr3L_16580610_16580996;chr3L_16580335_16580347 50.00 42.86 33.33 80.00 40.00 33.33 42.11 50.00 47.62 NA 42.86 50.00 75.00 66.67 50.00 57.89 57.14 42.86 46.67 69.23 66.67 66.67 50.00 50.00 NA 75.00 62.50 NA 50.00 NA 54.55 11.11 NA 57.14 NA NA 60.00 33.33 28.57 58.33 NA 50.00 60.00 57.14 42.86 50.00 50.00 NA 41.18 30.77 62.50 33.33 36.36 60.00 55.56 50.00 46.67 42.86 K jcn_only_AD Nc73EF,I_chr3L_16950628_16951334,I_chr3L_16950952_16952198,I_chr3L_16951588_16952198,I_chr3L_16951626_16952198,I_chr3L_16952138_16952198,I_chr3L_16952985_16955434,I_chr3L_16953768_16954599 chr3L + chr3L_16950606_16952198;chr3L_16950615_16952198 chr3L_16950628_16952198 chr3L_16952199_16952207;chr3L_16950580_16950605 81.82 69.57 74.42 83.78 80.77 70.37 83.33 82.35 85.42 NA NA 72.31 93.10 80.77 78.95 84.21 69.23 NA 81.58 80.49 87.50 84.38 71.43 85.71 82.76 NA 87.50 86.67 NA NA 80.00 NA NA 78.18 81.58 100.00 86.11 85.71 81.82 85.71 NA 70.00 72.73 85.71 81.82 80.77 59.26 NA 77.94 73.58 84.51 82.14 NA 90.00 81.25 74.36 92.00 NA K intron_retention Spn5,CG6687 chr3R - chr3R_11029212_11029271 chr3R_11029211_11029212;chr3R_11029271_11029272 chr3R_11028747_11029211;chr3R_11029272_11030269 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17398749_17398908 chr2R_17398771_17398908 chr2R_17398909_17399008;chr2R_17398671_17398748 0.00 2.56 2.04 0.00 0.00 0.00 0.00 0.00 0.87 1.82 0.00 0.00 0.00 2.44 2.56 0.00 0.00 1.69 0.00 0.00 0.00 0.00 4.08 0.00 2.38 0.00 2.04 0.00 2.44 0.00 3.61 0.00 2.56 1.23 3.03 0.00 0.00 0.00 0.00 1.11 2.44 2.48 2.22 3.45 0.00 2.00 0.00 1.69 1.25 0.00 0.00 0.00 0.00 2.94 0.00 0.00 1.03 0.00 K intron_retention g,I_chrX_13628772_13629563 chrX - chrX_13623057_13623116 chrX_13623056_13623057;chrX_13623116_13623117 chrX_13622916_13623056;chrX_13623117_13623726 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.70 20.00 5.56 0.00 NA NA NA 6.67 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 NA K cassette eIF5,noncoding_24049,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15883984_15885854 chrX_15883984_15885115;chrX_15885411_15885854 chrX_15885116_15885410 chrX_15883938_15883983;chrX_15885855_15885912 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor RpL29,I_chr2R_17184688_17191389 chr2R + chr2R_17181380_17181558 chr2R_17181380_17181555 chr2R_17181355_17181379;chr2R_17181559_17181664 0.40 0.54 0.21 0.24 0.20 0.27 0.27 0.20 0.22 0.28 0.30 0.26 0.19 0.28 0.21 0.22 0.26 0.26 0.26 0.28 0.28 1.30 1.03 0.49 0.17 0.24 1.56 0.76 1.21 1.43 0.33 0.94 1.71 0.24 1.20 2.02 0.68 0.53 0.57 0.40 1.21 0.21 0.36 0.70 0.40 1.75 0.75 1.64 0.33 0.55 0.80 0.42 0.46 1.21 0.25 0.23 0.47 2.29 N alternative_donor CG2003 chr3R + chr3R_27815249_27815312;chr3R_27815189_27815312 chr3R_27815253_27815312 chr3R_27815313_27816636;chr3R_27815109_27815188 2.33 1.92 0.00 8.00 3.45 2.17 2.08 1.47 8.08 0.00 0.00 10.53 2.56 2.56 0.00 0.00 2.70 0.00 0.00 2.00 0.00 0.00 10.17 3.45 0.00 3.23 2.27 2.78 0.00 1.92 29.82 11.90 10.53 0.00 0.00 5.00 12.96 12.50 1.64 9.46 0.00 2.25 0.00 2.44 1.92 12.90 0.00 9.84 2.33 4.55 2.99 5.71 3.57 2.56 1.96 12.96 0.00 8.24 K alternative_donor Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654157,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15652363_15654499;chrX_15652363_15654157 chrX_15652363_15654272 chrX_15652357_15652362;chrX_15654500_15654599 50.00 NA 50.00 33.33 NA 40.00 50.00 81.82 33.33 NA NA 63.64 33.33 83.33 60.00 64.29 NA 50.00 80.00 45.45 33.33 20.00 20.00 NA 50.00 40.00 50.00 NA 50.00 NA 50.00 NA 33.33 64.71 66.67 50.00 NA NA 66.67 83.33 NA 69.23 25.00 NA NA NA NA 25.00 76.92 NA 66.67 NA NA NA 42.86 NA NA 75.00 K jcn_only_AD CG2177,I_chr4_334269_334329,I_chr4_334269_334505 chr4 - chr4_334269_334324;chr4_334269_334373 chr4_334269_334329 chr4_334169_334268;chr4_334374_334429 0.00 1.64 0.00 1.26 0.00 0.00 0.73 0.44 0.63 0.00 0.00 0.93 0.93 0.00 0.65 2.28 0.00 0.00 0.00 1.10 0.00 0.00 2.04 1.35 1.28 0.81 0.00 0.00 0.90 0.00 1.38 0.00 0.67 0.00 0.00 0.00 3.23 0.00 1.69 0.00 0.97 2.16 0.00 0.00 0.00 0.71 0.00 0.52 0.41 0.00 0.00 0.00 0.00 0.00 2.19 1.56 0.00 0.38 K cassette gro chr3R + chr3R_21871550_21872454 chr3R_21871550_21872260;chr3R_21872315_21872454 chr3R_21872261_21872314 chr3R_21871451_21871549;chr3R_21872455_21872631 91.49 88.57 94.64 91.04 88.89 93.75 77.50 91.30 93.06 84.00 96.97 88.89 96.43 93.55 86.79 95.65 96.67 91.67 95.45 90.36 94.87 94.44 92.86 96.77 88.24 91.49 96.43 77.78 67.39 92.31 97.67 91.67 96.69 94.59 96.67 85.29 97.92 84.62 88.57 93.33 83.67 95.45 93.48 90.62 74.29 85.71 85.71 90.24 89.41 89.19 96.15 95.00 85.19 73.68 88.33 87.50 72.00 97.56 K jcn_only_AA CG32412 chr3L - chr3L_5895356_5895434 chr3L_5895377_5895434 chr3L_5895435_5895550;chr3L_5895260_5895355 0.68 0.00 1.43 0.00 0.00 0.00 0.00 1.27 1.90 0.00 3.12 0.78 4.44 1.85 2.22 0.00 5.66 0.00 0.00 2.01 0.00 1.30 0.73 0.64 1.39 0.00 1.61 0.00 3.77 0.00 0.00 0.00 3.28 2.30 0.00 0.00 0.58 6.06 0.00 0.79 0.00 1.34 1.92 0.00 0.58 1.82 0.93 1.18 0.68 0.81 1.92 0.00 0.00 2.00 2.56 0.00 0.00 0.00 K intron_retention CG15544 chr3R + chr3R_26665752_26666166 chr3R_26665751_26665752;chr3R_26666166_26666167 chr3R_26664017_26665751;chr3R_26666167_26667723 6.67 0.00 11.76 7.41 0.00 0.00 0.00 2.63 12.20 NA 11.11 13.95 10.00 5.56 7.69 0.00 0.00 7.41 10.34 11.48 6.67 0.00 0.00 0.00 NA 0.00 14.29 6.67 25.00 12.50 10.53 NA 9.09 9.52 NA 5.26 0.00 NA 0.00 10.81 NA 8.77 4.17 4.76 5.88 5.88 NA 12.00 11.76 NA 9.09 NA NA NA 6.67 NA NA 0.00 K alternative_acceptor Fps85D,I_chr3R_5194729_5194776,I_chr3R_5216796_5218450 chr3R - chr3R_5216796_5218462 chr3R_5216814_5218462 chr3R_5218463_5218550;chr3R_5216696_5216795 1.57 1.79 1.67 0.00 0.00 1.75 0.00 1.30 1.37 0.00 1.61 0.00 0.00 3.57 1.32 1.72 3.51 1.82 0.00 1.57 2.17 2.41 1.82 0.00 0.00 0.00 1.59 4.55 0.00 0.00 0.00 0.00 1.75 1.89 0.00 2.78 0.95 2.70 1.19 2.41 0.00 0.95 2.13 1.89 2.94 2.27 0.00 2.13 3.54 1.85 2.35 1.59 0.00 0.00 1.47 2.17 0.00 0.00 K intron_retention Irbp,Ranbp9 chr3R + chr3R_7241416_7241473 chr3R_7241415_7241416;chr3R_7241473_7241474 chr3R_7241270_7241415;chr3R_7241474_7241662 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.72 100.00 100.00 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.04 100.00 100.00 100.00 98.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.94 100.00 98.63 100.00 100.00 99.00 100.00 98.73 100.00 98.55 100.00 100.00 100.00 98.73 100.00 100.00 100.00 100.00 98.41 100.00 100.00 97.96 K jcn_only_AD CG6838,I_chr3L_22709306_22709668 chr3L - chr3L_22709303_22709406 chr3L_22709303_22709397 chr3L_22709206_22709302;chr3L_22709407_22709514 97.75 91.75 96.58 98.39 100.00 94.29 97.87 94.96 96.91 94.74 95.59 95.89 97.33 95.95 97.94 98.29 98.61 98.48 97.75 98.83 95.65 99.19 96.09 97.50 96.20 96.77 93.97 92.16 95.17 99.09 97.96 97.50 91.47 99.25 96.92 100.00 99.40 99.03 98.72 98.98 95.60 98.79 100.00 98.41 96.23 99.19 100.00 95.89 98.72 97.25 97.22 98.70 100.00 93.75 98.00 98.25 98.65 97.52 K alternative_acceptor wge chr3R - chr3R_18539117_18539306;chr3R_18539087_18539306 chr3R_18539090_18539306 chr3R_18539307_18539565;chr3R_18538527_18539086 0.00 6.67 0.00 0.00 0.00 0.00 8.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 2.08 4.65 3.57 0.00 0.00 11.54 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 5.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 3.23 0.00 8.33 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG6459,RI_chr2R_13565425_13565874 chr2R - chr2R_13559312_13559369 chr2R_13559326_13559369 chr2R_13559370_13559714;chr2R_13558812_13559311 0.00 0.39 0.38 0.53 0.00 0.52 0.58 0.27 0.00 0.48 0.00 0.24 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.21 0.00 0.00 0.29 0.32 0.52 0.00 0.26 0.37 0.40 0.46 0.00 0.55 0.56 0.93 0.00 0.00 0.41 0.36 0.00 0.32 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.25 0.00 0.28 0.00 0.00 0.00 0.00 0.68 0.00 0.00 K intron_retention drpr,I_chr3L_1720385_1723579 chr3L - chr3L_1716557_1716796 chr3L_1716556_1716557;chr3L_1716796_1716797 chr3L_1715710_1716556;chr3L_1716797_1716943 3.15 2.57 3.69 5.51 3.09 2.78 3.09 3.85 3.07 2.61 4.08 3.91 5.98 5.96 3.04 3.27 3.10 2.85 2.66 2.45 3.73 3.24 5.00 4.63 5.52 0.88 2.78 5.65 3.72 3.07 2.56 2.41 3.15 4.05 4.26 5.36 2.76 3.57 2.72 3.51 4.46 3.15 2.64 2.83 2.20 2.50 3.33 5.54 3.04 3.40 3.21 3.42 2.00 4.00 2.53 3.03 2.34 3.64 K intron_retention Ptpmeg,I_chr3L_353688_353782,I_chr3L_355125_355175 chr3L + chr3L_347780_351366 chr3L_347779_347780;chr3L_351366_351367 chr3L_347766_347779;chr3L_351367_351663 10.62 11.11 0.00 0.00 14.29 0.00 13.79 16.67 11.90 NA 15.00 6.45 12.50 7.41 13.04 7.14 0.00 29.41 7.41 14.29 7.69 80.00 9.09 5.00 NA 15.00 19.05 4.76 18.52 8.33 4.35 0.00 14.71 10.71 10.53 0.00 NA 0.00 NA 13.33 6.90 10.26 15.79 18.75 0.00 2.86 14.29 7.14 10.87 17.65 12.50 NA 14.29 NA 8.70 16.67 NA 5.26 K jcn_only_AD CG32250,RI_chr3L_4319452_4320137 chr3L + chr3L_4319260_4320137 chr3L_4319452_4320137 chr3L_4320138_4320237;chr3L_4319199_4319259 0.00 0.00 NA 0.00 0.00 0.00 NA 9.52 3.33 NA NA 2.13 NA NA 0.00 NA NA NA NA 0.00 NA 5.13 0.00 0.00 3.45 NA 15.00 NA 0.00 0.00 NA 0.00 0.00 4.00 2.56 0.00 0.00 0.00 3.12 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA 4.17 NA 9.09 NA 0.00 K intron_retention unc-13,RI_chr4_892852_895828,RI_chr4_894198_895828,E_chr4_894796_894871,I_chr4_895008_895828,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_892852_895828 chr4_892851_892852;chr4_895828_895829 chr4_892753_892851;chr4_895829_895928 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD gish chr3R + chr3R_12100604_12100675;chr3R_12100598_12100675 chr3R_12100608_12100675 chr3R_12100676_12100891;chr3R_12100535_12100597 14.29 NA NA 8.00 NA NA 14.29 20.83 14.29 0.00 NA 22.58 NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA NA NA NA 19.35 11.11 NA 15.00 14.29 NA NA NA NA NA 6.98 NA 15.00 NA 12.50 NA 7.41 NA 17.50 4.76 NA NA 15.00 NA NA NA NA NA 17.14 K intron_retention CG4789,ppk28 chrX + chrX_16695621_16695686 chrX_16695620_16695621;chrX_16695686_16695687 chrX_16695102_16695620;chrX_16695687_16696067 2.90 0.00 0.00 12.99 0.00 3.17 6.35 6.25 2.94 0.00 0.00 0.00 0.00 0.00 5.00 7.55 0.00 2.90 0.00 2.92 0.00 1.92 4.17 2.06 4.55 5.26 4.00 12.20 3.28 6.90 3.28 4.12 2.35 0.00 2.44 5.63 2.75 1.22 1.06 2.75 6.85 2.36 4.65 1.41 3.85 5.93 2.38 9.71 2.94 3.33 2.50 0.00 0.00 2.41 1.47 4.50 3.23 5.56 K intron_retention CG17002 chr2R + chr2R_2875771_2876087 chr2R_2875770_2875771;chr2R_2876087_2876088 chr2R_2875292_2875770;chr2R_2876088_2876423 36.28 42.11 42.86 60.00 63.64 26.67 36.84 45.45 37.04 NA NA 33.33 NA 40.00 35.71 38.46 41.67 NA NA 45.00 NA 34.78 28.57 45.45 40.00 NA 39.13 40.00 38.46 33.33 NA 17.65 35.71 30.77 33.33 27.78 29.03 26.09 43.75 26.32 NA 42.86 NA 50.00 30.00 23.08 33.33 NA 41.18 22.22 50.00 NA 18.18 29.63 40.00 19.35 35.14 NA K alternative_acceptor CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21263124_21263722 chr2L_21263124_21263647 chr2L_21262988_21263123;chr2L_21263723_21263786 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention pum,I_chr3R_4898752_4906279,I_chr3R_4989351_5039481 chr3R - chr3R_4906745_5039481 chr3R_4906744_4906745;chr3R_5039481_5039482 chr3R_4906280_4906744;chr3R_5039482_5039568 0.00 0.00 5.56 0.00 0.00 5.56 0.00 3.57 4.08 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8726 chr2R - chr2R_3856982_3857078 chr2R_3856981_3856982;chr2R_3857078_3857079 chr2R_3856756_3856981;chr2R_3857079_3857274 2.84 0.00 0.00 4.65 3.85 0.00 0.00 0.00 2.67 0.00 0.00 4.17 0.00 3.85 0.00 9.52 4.00 3.12 NA 5.38 4.76 2.33 2.78 3.12 0.00 0.00 5.56 8.51 4.44 3.85 0.00 0.00 7.41 0.00 0.00 0.00 4.88 0.00 2.60 5.17 0.00 2.90 0.00 8.89 12.24 10.42 6.35 11.90 4.62 0.00 0.00 0.00 2.70 5.00 7.41 9.76 2.44 11.11 K alternative_donor rtet,I_chr3R_16934777_16934968,RE_chr3R_16939259_16939667 chr3R + chr3R_16934773_16934968 chr3R_16934777_16934968 chr3R_16934969_16935068;chr3R_16934677_16934772 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 K intron_retention RanBPM chr2R + chr2R_6321229_6321291 chr2R_6321228_6321229;chr2R_6321291_6321292 chr2R_6321047_6321228;chr2R_6321292_6321404 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4670,I_chr2R_9120056_9120120 chr2R - chr2R_9120056_9120974 chr2R_9120055_9120056;chr2R_9120974_9120975 chr2R_9119956_9120055;chr2R_9120975_9122801 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 1.49 1.72 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG4365 chr3L + chr3L_20791960_20792242;chr3L_20792089_20792242;chr3L_20791819_20792242;chr3L_20792077_20792242 chr3L_20792100_20792242 chr3L_20792243_20793181;chr3L_20791802_20791818 3.45 3.85 7.14 4.44 NA NA 3.70 0.00 2.99 NA 4.88 0.00 NA 0.00 3.12 0.00 4.17 3.57 3.85 1.30 2.94 4.55 11.11 0.00 NA 3.45 3.57 0.00 NA NA 11.54 NA 3.45 0.00 NA NA 3.70 14.29 4.35 0.00 NA 3.64 6.45 0.00 4.55 3.70 0.00 4.00 0.00 3.33 0.00 NA 0.00 8.70 0.00 0.00 0.00 6.25 K intron_retention tay,RI_chrX_15779977_15780033,I_chrX_15779977_15780538,RI_chrX_15780874_15781045,I_chrX_15783766_15785978 chrX - chrX_15779977_15781150 chrX_15779976_15779977;chrX_15781150_15781151 chrX_15779877_15779976;chrX_15781151_15781157 91.99 80.00 87.50 94.44 NA 90.00 92.86 94.74 80.00 NA 100.00 84.21 93.75 92.31 100.00 95.00 90.00 87.50 92.31 81.25 NA NA 100.00 NA NA 88.89 NA NA 80.00 91.67 90.91 NA 100.00 94.74 NA 92.31 100.00 NA NA 92.86 NA 90.00 91.67 NA NA NA NA 90.91 94.12 NA NA NA NA NA 87.50 NA NA NA K intron_retention I_chr3L_22843473_22858870,CG33170,noncoding_14230,I_chr3L_22859135_22860499 chr3L + chr3L_22858026_22858870 chr3L_22858025_22858026;chr3L_22858870_22858871 chr3L_22857803_22858025;chr3L_22858871_22858924 0.00 0.00 2.00 1.56 0.00 0.00 0.00 1.03 2.16 0.00 0.00 1.32 2.70 1.82 5.45 0.00 0.00 0.00 0.00 2.61 0.00 0.00 3.23 0.00 2.94 0.00 5.00 0.00 0.00 0.00 1.54 1.25 0.00 1.43 0.00 9.09 0.00 0.00 0.00 2.20 2.30 1.83 0.00 0.00 0.00 0.00 0.00 1.82 1.22 1.09 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.57 K jcn_only_AA CG10462 chr2L - chr2L_19732671_19732744 chr2L_19732677_19732744 chr2L_19732745_19733069;chr2L_19732573_19732670 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 100.00 100.00 99.06 98.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.05 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2814327_2817753 chr2R_2814327_2814894;chr2R_2815654_2816013;chr2R_2816342_2817327;chr2R_2817604_2817753 chr2R_2814895_2815653;chr2R_2816014_2816341;chr2R_2817328_2817603 chr2R_2814227_2814326;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 N alternative_acceptor CG8839,I_chr2R_8229288_8231538 chr2R - chr2R_8228920_8228992 chr2R_8228935_8228992 chr2R_8228993_8229287;chr2R_8228715_8228919 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 68.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_last_exon CG1646,RI_chr3R_24638209_24638280,I_chr3R_24641816_24641874 chr3R + chr3R_24639729_24640869 chr3R_24639729_24639911 chr3R_24640870_24641144 chr3R_24639912_24639980 chr3R_24639603_24639728 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.39 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.88 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.71 0.00 0.00 0.00 0.97 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17760 chr2R + chr2R_8514422_8514488 chr2R_8514421_8514422;chr2R_8514488_8514489 chr2R_8514412_8514421;chr2R_8514489_8514557 1.39 1.23 0.00 4.05 0.00 1.85 1.09 2.70 0.44 0.00 0.00 2.06 0.00 0.00 2.96 3.05 0.00 3.92 3.28 2.84 2.06 0.00 1.15 0.00 4.62 1.68 4.76 0.00 3.12 1.79 1.75 1.39 2.70 2.55 1.22 3.77 0.00 0.00 2.70 0.86 3.06 1.88 1.20 1.04 0.00 2.86 3.12 2.68 0.41 2.70 5.68 0.00 0.00 0.00 0.00 1.09 1.32 1.61 K cassette I_chr2R_4783150_4783708,Ggamma1,noncoding_5300 chr2R + chr2R_4789028_4789832 chr2R_4789028_4789645;chr2R_4789783_4789832 chr2R_4789646_4789782 chr2R_4789007_4789027;chr2R_4789833_4790635 16.88 18.06 16.88 25.50 26.60 24.43 30.82 38.46 32.31 12.61 45.56 37.89 46.73 32.23 24.68 26.05 38.36 17.95 42.03 14.18 31.73 19.16 10.88 11.83 7.78 34.02 14.39 8.60 17.36 11.35 24.84 13.22 13.41 28.29 15.04 13.04 12.96 12.95 7.12 15.75 16.67 29.65 27.72 20.28 13.36 16.35 7.73 17.68 24.51 14.41 12.79 16.50 5.29 10.76 27.21 12.87 7.17 5.11 K alternative_donor ptr,I_chrX_2243281_2243359,I_chrX_2243281_2243373,I_chrX_2243647_2248739 chrX - chrX_2243281_2243374 chrX_2243281_2243359 chrX_2243181_2243280;chrX_2243375_2243459 0.00 5.56 0.00 3.33 NA 0.00 0.00 4.76 2.56 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA 1.33 0.00 0.00 4.00 0.00 2.56 1.56 2.27 3.57 0.00 0.00 2.94 4.55 0.00 2.70 4.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 3.85 0.00 0.00 2.56 2.33 0.00 0.00 NA 0.00 NA NA 4.76 K jcn_only_AA nrv2,I_chr2L_6791842_6794492,I_chr2L_6793397_6794492,I_chr2L_6793405_6793916,I_chr2L_6793405_6794499,I_chr2L_6793684_6794492 chr2L - chr2L_6793374_6794492 chr2L_6793405_6794492 chr2L_6794493_6794592;chr2L_6793305_6793373 100.00 100.00 97.92 100.00 100.00 100.00 97.30 100.00 98.91 100.00 NA 96.81 100.00 100.00 100.00 100.00 95.83 100.00 100.00 99.07 96.00 100.00 100.00 100.00 96.55 100.00 100.00 NA 96.55 97.62 100.00 100.00 96.77 100.00 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.21 98.97 100.00 100.00 98.11 97.73 100.00 98.55 98.18 98.53 100.00 K alternative_donor I_chr2R_401246_447865,Stlk,CREI_chr2R_434560_435506 chr2R + chr2R_434486_447865 chr2R_434560_447865 chr2R_447866_447950;chr2R_434460_434485 100.00 100.00 100.00 100.00 NA NA 88.00 95.00 100.00 NA 100.00 100.00 92.31 100.00 NA 96.15 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA NA 90.00 NA NA 100.00 100.00 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 96.00 85.71 100.00 87.50 NA NA 100.00 NA 100.00 100.00 K intron_retention CG5805 chr3R - chr3R_20611310_20611508 chr3R_20611309_20611310;chr3R_20611508_20611509 chr3R_20610319_20611309;chr3R_20611509_20611636 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ac3,I_chr2L_21643253_21646594 chr2L + chr2L_21643253_21643763 chr2L_21643252_21643253;chr2L_21643763_21643764 chr2L_21643170_21643252;chr2L_21643764_21644219 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA 5.88 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 5.26 NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389272_2395659 chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2395659 chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2389172_2389271;chrX_2395660_2395759 33.33 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor RpL15 chr3LHet + chr3LHet_2398018_2398127;chr3LHet_2397859_2398127;chr3LHet_2397925_2398127;chr3LHet_2397992_2398127;chr3LHet_2398060_2398127;chr3LHet_2397841_2398127;chr3LHet_2398002_2398127;chr3LHet_2397820_2398127 chr3LHet_2398053_2398127 chr3LHet_2398128_2398454;chr3LHet_2397802_2397819 4.17 14.29 2.17 1.04 0.00 6.67 19.44 2.18 15.62 4.17 4.55 8.93 11.11 11.11 0.78 12.07 1.23 3.33 1.04 4.84 0.00 5.80 22.22 8.70 5.56 1.56 17.86 1.60 4.20 1.25 3.77 1.31 0.46 0.79 4.76 8.57 11.11 15.38 16.67 0.67 2.21 1.59 1.56 0.89 0.49 2.45 16.67 1.28 3.23 17.39 21.74 23.53 0.16 21.05 1.20 19.23 16.67 0.17 K jcn_only_AD CG11347,I_chr3L_4412551_4417819 chr3L + chr3L_4419173_4419428 chr3L_4419263_4419428 chr3L_4419429_4419663;chr3L_4418782_4419172 30.69 37.84 27.78 24.32 32.00 33.33 40.62 37.04 38.71 NA 23.81 37.31 41.94 40.00 32.14 56.52 25.00 25.00 35.71 37.14 38.46 9.93 28.57 30.95 22.58 31.71 42.86 41.18 27.45 32.14 38.10 24.14 38.10 38.89 10.71 28.89 27.78 37.84 32.14 12.82 29.79 28.07 19.05 32.61 19.57 14.63 28.21 23.64 37.74 20.69 19.57 30.43 41.86 25.58 28.57 39.29 30.43 20.69 K jcn_only_AA Dad,I_chr3R_12893363_12894192,I_chr3R_12898717_12898778 chr3R + chr3R_12880085_12880773 chr3R_12880085_12880757 chr3R_12879745_12880084;chr3R_12880774_12880896 5.00 NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor RI_chrX_502548_513324,CG13366,I_chrX_509497_513324,I_chrX_513176_513324,I_chrX_513519_513631 chrX - chrX_509546_513324 chrX_513176_513324 chrX_513325_513424;chrX_508807_509545 0.00 0.00 0.00 18.18 25.00 0.00 33.33 22.22 28.57 NA 0.00 18.18 20.00 16.67 33.33 66.67 0.00 0.00 20.00 50.00 0.00 33.33 14.29 0.00 0.00 16.67 0.00 0.00 0.00 0.00 0.00 NA 0.00 25.00 0.00 0.00 0.00 NA 0.00 12.50 NA 22.22 0.00 0.00 NA 0.00 NA 6.67 25.00 NA 0.00 0.00 0.00 NA 20.00 NA NA 0.00 K alternative_donor CG3621,noncoding_21543,I_chrX_2066779_2066838 chrX + chrX_2066779_2066838;chrX_2066739_2066838 chrX_2066737_2066838 chrX_2066839_2066938;chrX_2066679_2066736 0.91 1.67 0.00 0.00 3.03 2.00 0.00 1.35 1.43 2.38 0.00 1.03 0.00 0.00 1.59 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 1.16 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 2.33 1.59 0.98 1.92 1.01 1.11 1.85 0.91 2.70 1.67 0.00 1.05 0.00 0.00 1.28 0.00 1.56 2.50 1.41 0.00 1.79 0.00 0.00 1.00 K jcn_only_AA glo,I_chr3R_7644679_7644739,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7644679_7644932 chr3R_7644683_7644932 chr3R_7644933_7644980;chr3R_7644583_7644678 99.23 100.00 97.47 100.00 100.00 96.83 97.75 100.00 98.53 97.30 100.00 99.30 100.00 97.10 100.00 100.00 96.77 NA 98.67 98.17 100.00 99.38 99.32 96.97 100.00 100.00 99.24 98.29 98.31 100.00 98.98 100.00 97.27 99.22 98.78 98.15 100.00 100.00 98.80 99.40 100.00 98.56 100.00 98.47 98.51 99.07 100.00 98.69 98.78 97.40 98.91 100.00 100.00 100.00 96.08 100.00 100.00 98.12 K alternative_donor CG7536,I_chrX_17976413_17979287,I_chrX_17976413_17979359 chrX - chrX_17976413_17979230 chrX_17976413_17979226 chrX_17976313_17976412;chrX_17979231_17979526 25.00 19.51 22.86 25.58 28.57 26.92 26.83 29.55 30.77 45.45 23.68 26.92 17.65 37.93 14.71 26.47 19.05 16.67 20.00 20.00 30.56 25.00 26.98 22.73 26.47 24.24 24.59 44.00 34.88 30.00 19.35 22.73 32.00 27.45 32.26 22.22 25.00 26.32 24.59 13.58 25.00 20.25 22.22 19.72 26.09 23.91 26.47 29.82 30.51 30.00 27.66 24.00 13.79 40.00 25.00 30.77 12.20 15.38 K intron_retention spi,I_chr2L_19569183_19577185,I_chr2L_19569227_19572142,I_chr2L_19569227_19577173 chr2L - chr2L_19571768_19577185 chr2L_19571767_19571768;chr2L_19577185_19577186 chr2L_19571572_19571767;chr2L_19577186_19577273 0.00 0.00 0.00 0.00 0.00 0.00 1.01 1.33 0.72 0.00 0.00 1.69 0.00 0.00 0.00 1.35 0.00 0.00 2.38 1.17 0.00 0.00 0.00 0.00 0.00 0.00 0.52 6.06 0.00 0.00 1.16 0.00 0.00 0.90 0.47 0.41 0.00 0.00 0.56 0.55 0.00 0.00 0.00 0.72 0.00 0.00 0.80 0.00 0.89 1.69 1.25 0.84 0.00 0.00 0.00 1.01 0.59 0.00 K intron_retention CG31689,I_chr2L_2730373_2736310,I_chr2L_2730470_2736310,RI_chr2L_2736137_2736310,I_chr2L_2736230_2736310,I_chr2L_2736431_2737036 chr2L + chr2L_2730470_2736129 chr2L_2730469_2730470;chr2L_2736129_2736130 chr2L_2730383_2730469;chr2L_2736130_2736136 100.00 NA 100.00 92.86 NA 100.00 100.00 94.44 100.00 NA NA 95.00 100.00 100.00 92.31 96.15 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA 88.89 100.00 NA NA NA 100.00 NA NA 100.00 NA 100.00 NA NA NA 87.50 NA 100.00 100.00 NA NA NA NA 100.00 96.00 NA 100.00 100.00 NA NA 90.91 NA NA NA K intron_retention Mob2,CE_chr3L_11520917_11527526,RI_chr3L_11535932_11545929 chr3L - chr3L_11535935_11545929 chr3L_11535934_11535935;chr3L_11545929_11545930 chr3L_11535365_11535934;chr3L_11545930_11546029 15.38 12.50 7.69 6.90 NA 23.08 23.08 15.79 15.38 NA 50.00 20.83 NA 0.00 28.57 12.50 25.00 NA 26.09 17.65 NA 50.00 21.74 13.33 NA 23.53 14.29 NA NA 30.77 12.00 NA NA 17.86 NA NA 0.00 NA NA 5.26 NA 21.43 14.29 NA NA NA NA NA 9.76 NA 11.11 7.69 NA NA 11.11 NA NA NA K mutually_exclusive CG11009,I_chr3L_12844823_12845526,I_chr3L_12845441_12845526 chr3L + chr3L_12844823_12845526,chr3L_12845622_12845715 chr3L_12844823_12845331,chr3L_12845378_12845715 chr3L_12845527_12845621 chr3L_12845332_12845377 chr3L_12844723_12844822;chr3L_12845716_12845816 77.78 66.67 71.43 96.15 57.14 NA 83.33 84.62 90.00 83.33 63.64 91.67 NA NA 88.89 100.00 NA 77.78 62.50 100.00 100.00 NA 83.33 63.64 71.43 66.67 62.50 100.00 NA NA 91.67 80.00 77.78 62.50 NA 25.00 75.00 NA 66.67 NA 75.00 84.62 NA 66.67 85.71 85.71 70.00 100.00 75.00 75.00 61.54 77.78 NA NA 63.64 77.78 37.50 81.82 K jcn_only_AD CG1572,RI_chrX_11450380_11450442,I_chrX_11450380_11452520 chrX - chrX_11450380_11452571;chrX_11450380_11452565 chrX_11450380_11450442 chrX_11450280_11450379;chrX_11452572_11452620 0.09 0.16 0.08 0.45 0.00 0.20 0.00 0.25 0.09 0.00 0.00 0.04 0.08 0.00 0.08 0.16 0.07 0.00 0.20 0.16 0.00 0.25 0.00 0.20 0.28 0.00 0.34 0.00 0.00 0.00 0.08 0.21 0.00 0.15 0.00 0.14 0.22 0.17 0.00 0.10 0.00 0.32 0.00 0.25 0.26 0.00 0.00 0.22 0.22 0.08 0.15 0.09 0.22 0.00 0.07 0.34 0.15 0.33 K intron_retention CG10737 chr2R + chr2R_15061627_15061843 chr2R_15061626_15061627;chr2R_15061843_15061844 chr2R_15061209_15061626;chr2R_15061844_15061870 0.00 0.00 0.00 0.00 0.00 0.00 21.05 3.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499338_1501798 chr3L_1499338_1499771;chr3L_1499880_1500244;chr3L_1500389_1501350;chr3L_1501407_1501798 chr3L_1499772_1499879;chr3L_1500245_1500388;chr3L_1501351_1501406 chr3L_1499043_1499337;chr3L_1501799_1501892 4.76 3.03 2.00 6.45 0.00 1.92 0.00 9.09 5.62 5.00 11.11 8.05 27.78 5.56 2.82 3.17 4.00 2.27 4.35 4.71 9.09 7.55 7.02 5.66 7.89 1.37 5.36 6.52 2.27 4.76 8.82 2.08 5.71 3.33 6.12 11.43 4.76 3.57 4.76 3.12 5.00 4.00 3.92 5.88 3.70 7.25 6.00 3.37 2.97 6.35 8.22 6.12 0.00 3.23 4.62 7.41 4.00 2.94 K cassette CG9947,eIF-2alpha chrX - chrX_16333320_16333629 chrX_16333320_16333456;chrX_16333548_16333629 chrX_16333457_16333547 chrX_16333264_16333319;chrX_16333630_16333795 1.60 1.33 1.46 1.11 1.10 1.42 1.32 2.27 1.38 2.08 1.23 1.85 2.26 1.60 0.73 2.70 1.38 0.97 4.66 1.46 1.14 2.53 1.32 1.96 1.23 0.43 1.70 2.15 0.74 3.28 1.40 2.59 2.32 1.45 2.21 2.99 1.60 1.73 1.63 1.53 1.88 1.53 1.60 3.44 2.59 1.69 0.65 2.93 1.27 3.28 1.85 2.16 0.22 1.29 1.37 1.92 0.38 0.56 K cassette mthl4 chr2R - chr2R_13333190_13333481 chr2R_13333190_13333255;chr2R_13333425_13333481 chr2R_13333256_13333424 chr2R_13332995_13333189;chr2R_13333482_13333736 90.00 90.62 89.66 89.80 92.50 87.72 93.08 88.51 89.19 90.00 80.33 85.87 98.59 87.84 82.61 89.08 89.02 79.10 90.11 88.79 79.25 93.18 82.93 84.62 94.44 66.67 92.59 92.31 78.95 95.83 85.29 94.12 96.77 86.51 85.71 90.00 92.31 94.74 87.50 96.55 96.88 87.94 94.29 96.43 93.10 93.10 88.89 97.06 89.51 95.65 91.43 86.67 90.48 91.30 88.71 90.91 95.39 98.96 K alternative_acceptor Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046104;chr3L_16045251_16046129;chr3L_16045251_16046108;chr3L_16045251_16045854 chr3L_16045251_16046111 chr3L_16045216_16045250;chr3L_16046130_16046204 16.67 20.00 13.64 22.45 23.53 11.54 12.77 22.92 16.67 10.53 0.00 16.00 18.42 16.67 21.62 12.77 29.03 10.00 21.74 16.39 4.55 23.19 18.92 14.29 16.67 9.68 10.71 11.11 15.38 21.43 19.44 27.78 15.94 10.91 15.62 15.22 13.64 10.53 22.22 17.31 29.17 12.28 18.52 11.11 28.57 22.22 16.67 18.18 25.00 16.67 13.79 14.29 0.00 25.00 19.51 23.08 11.11 28.00 K intron_retention CG40191,I_chr2RHet_391475_391828,I_chr2RHet_392279_392824 chr2RHet + chr2RHet_391127_391180 chr2RHet_391126_391127;chr2RHet_391180_391181 chr2RHet_391077_391126;chr2RHet_391181_391278 11.90 16.67 19.57 10.67 13.95 11.90 11.43 16.19 17.53 NA 7.69 12.39 16.07 13.46 14.58 15.79 12.50 9.09 11.29 10.71 21.62 8.33 13.33 18.42 10.00 10.71 17.50 23.81 10.87 11.54 10.53 0.00 13.04 17.50 5.71 2.94 12.50 9.68 0.00 7.22 4.26 6.80 21.74 8.33 0.00 22.22 10.00 5.41 13.73 13.89 14.29 11.63 4.00 17.39 12.24 14.29 5.26 11.90 K intron_retention Nup358,I_chr3R_21078958_21079044 chr3R + chr3R_21082578_21082646 chr3R_21082577_21082578;chr3R_21082646_21082647 chr3R_21082077_21082577;chr3R_21082647_21082779 100.00 100.00 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.22 100.00 100.00 100.00 100.00 100.00 100.00 99.00 100.00 100.00 100.00 100.00 98.97 100.00 100.00 100.00 100.00 99.05 98.39 98.77 100.00 100.00 100.00 100.00 98.57 98.51 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.48 100.00 100.00 98.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.23 K intron_retention CG8312 chr3R + chr3R_5448140_5448191 chr3R_5448139_5448140;chr3R_5448191_5448192 chr3R_5448075_5448139;chr3R_5448192_5448496 0.00 0.00 0.00 7.69 NA 10.00 5.56 3.45 7.14 0.00 0.00 13.79 NA NA 0.00 NA 0.00 0.00 12.50 5.56 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 5.71 0.00 0.00 4.00 NA 8.82 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 5.56 NA 3.85 0.00 K intron_retention fs(1)h,I_chrX_7950171_7952371,I_chrX_7954192_7955240 chrX - chrX_7935313_7935383 chrX_7935312_7935313;chrX_7935383_7935384 chrX_7935144_7935312;chrX_7935384_7937766 0.00 0.00 2.27 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17180812_17181479,RI_chr3R_17181280_17181474,I_chr3R_17181974_17182126,RI_chr3R_17182422_17182532,RI_chr3R_17183087_17183245,RI_chr3R_17183087_17183726,I_chr3R_17183481_17200781,I_chr3R_17183927_17184513,I_chr3R_17183927_17185306,RI_chr3R_17184319_17184513,I_chr3R_17184319_17185084,I_chr3R_17184319_17185284,noncoding_18168,RI_chr3R_17184792_17185306,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,RI_chr3R_17189607_17189988,I_chr3R_17190098_17190207,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17181280_17200781 chr3R_17181279_17181280;chr3R_17200781_17200782 chr3R_17181180_17181279;chr3R_17200782_17200881 0.00 NA 4.55 0.00 0.00 NA NA 9.09 0.00 NA NA 3.12 0.00 NA 0.00 0.00 NA 0.00 5.56 2.86 NA NA NA 11.11 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 2.86 6.67 9.68 6.67 NA NA 0.00 0.00 8.70 9.09 0.00 NA NA NA NA NA 0.00 NA 0.00 K cassette bif,I_chrX_11581793_11583233 chrX + chrX_11578288_11583233 chrX_11578288_11581494;chrX_11581669_11583233 chrX_11581495_11581668 chrX_11578188_11578287;chrX_11583234_11583333 99.76 100.00 99.60 99.05 100.00 99.59 97.33 100.00 99.82 99.33 99.54 99.76 100.00 100.00 100.00 99.64 100.00 99.56 99.53 100.00 100.00 99.72 99.75 100.00 99.58 99.56 99.69 100.00 98.40 99.57 100.00 100.00 99.30 99.71 100.00 99.60 100.00 99.68 100.00 100.00 98.01 100.00 100.00 100.00 99.04 100.00 99.62 100.00 99.78 100.00 100.00 99.47 99.48 100.00 99.64 99.64 100.00 99.48 K intron_retention Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3294634 chr2R_3294565_3294566;chr2R_3294634_3294635 chr2R_3294491_3294565;chr2R_3294635_3295326 87.87 NA NA 100.00 NA NA 90.91 93.33 78.95 NA NA 88.24 NA 88.89 81.82 94.44 88.89 87.50 NA 80.00 66.67 82.35 81.25 92.31 88.89 91.67 92.31 75.00 78.57 85.71 66.67 72.73 66.67 90.91 88.89 94.74 90.91 100.00 77.78 94.74 92.31 76.47 NA 91.67 NA 63.64 NA 77.27 65.00 NA 81.82 NA NA NA 90.91 NA NA 66.67 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2389073;chrX_2389272_2390808;chrX_2390959_2391350;chrX_2391522_2393243 chrX_2389074_2389271;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2393244_2393291 0.00 NA NA NA NA NA NA NA NA NA NA 2.70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention sta,E_chrX_1376435_1376729,snoRNA:M,snoRNA:Me28S-G980 chrX - chrX_1376514_1376705 chrX_1376513_1376514;chrX_1376705_1376706 chrX_1375828_1376513;chrX_1376706_1376891 0.12 0.07 0.18 0.11 0.10 0.11 0.13 0.15 0.12 0.14 0.06 0.12 0.06 0.20 0.16 0.20 0.13 0.17 0.15 0.16 0.06 0.22 0.08 0.09 0.09 0.17 0.24 0.80 0.10 0.09 0.11 0.11 0.17 0.11 0.11 0.12 0.08 0.09 0.07 0.12 0.17 0.17 0.16 0.06 0.10 0.13 0.08 0.12 0.23 0.17 0.09 0.11 0.13 0.09 0.16 0.06 0.12 0.31 K intron_retention I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781 chr3R - chr3R_17190368_17190435 chr3R_17190367_17190368;chr3R_17190435_17190436 chr3R_17190342_17190367;chr3R_17190436_17190672 0.00 0.00 0.00 6.45 0.00 6.67 0.00 2.70 3.92 NA 4.35 4.55 0.00 0.00 3.23 0.00 0.00 11.11 0.00 4.84 5.00 6.67 0.00 4.55 0.00 0.00 2.56 0.00 0.00 3.70 1.23 6.06 7.69 5.13 0.00 8.00 2.27 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 K alternative_acceptor veg,I_chr2R_12845291_12845765 chr2R + chr2R_12843183_12843248 chr2R_12843183_12843242 chr2R_12843138_12843182;chr2R_12843249_12844801 93.75 91.67 100.00 92.86 90.00 86.67 90.00 93.75 100.00 100.00 77.78 95.24 NA 91.67 93.33 80.95 88.89 100.00 87.50 84.62 90.91 81.82 90.91 83.33 90.91 NA 94.74 100.00 100.00 100.00 94.12 100.00 93.33 100.00 100.00 100.00 95.24 100.00 94.12 92.86 91.67 96.15 90.91 94.74 91.67 96.15 100.00 93.75 100.00 100.00 96.15 93.33 100.00 90.00 93.33 93.75 94.44 93.75 K intron_retention CG8949,I_chrX_16971474_16971708,I_chrX_16971501_16971713 chrX - chrX_16971474_16971708 chrX_16971473_16971474;chrX_16971708_16971709 chrX_16971401_16971473;chrX_16971709_16971808 96.66 NA NA NA NA NA NA 93.33 92.31 NA NA 87.50 NA NA NA 100.00 NA NA NA 80.00 NA 100.00 100.00 NA NA NA 100.00 NA 100.00 NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA 72.73 NA 90.91 NA NA NA NA 88.89 NA 100.00 NA NA NA 90.00 NA NA NA K jcn_only_AD CG3287,I_chr2R_2698891_2699406,I_chr2R_2700203_2700285 chr2R + chr2R_2698681_2699406;chr2R_2699349_2699406;chr2R_2698654_2699406 chr2R_2698891_2699406 chr2R_2699407_2699506;chr2R_2698533_2698653 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.61 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.62 2.00 0.00 0.00 0.00 0.00 1.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 2.17 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Taf1,I_chr3R_2473463_2473515 chr3R + chr3R_2473324_2473515 chr3R_2473463_2473515 chr3R_2473516_2473615;chr3R_2473016_2473323 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 K intron_retention CG31720,F_chr2L_10234951_10235484 chr2L - chr2L_10236287_10236374 chr2L_10236286_10236287;chr2L_10236374_10236375 chr2L_10236031_10236286;chr2L_10236375_10236547 19.64 NA NA NA NA NA NA 25.00 11.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA K cassette alpha-Cat,I_chr3L_23319861_23321813,I_chr3L_23327841_23328002 chr3L - chr3L_23319861_23321813 chr3L_23319861_23320593;chr3L_23320746_23321813 chr3L_23320594_23320745 chr3L_23319830_23319860;chr3L_23321814_23321913 100.00 100.00 100.00 96.97 100.00 100.00 99.15 99.32 99.40 93.33 100.00 97.62 98.46 100.00 100.00 99.25 100.00 98.08 98.99 97.58 100.00 97.06 100.00 100.00 100.00 100.00 98.53 100.00 88.89 96.77 98.94 96.77 92.59 100.00 100.00 97.56 100.00 97.14 100.00 100.00 100.00 99.22 100.00 100.00 95.45 100.00 98.18 100.00 99.30 98.55 100.00 97.30 100.00 100.00 100.00 100.00 98.41 97.50 N jcn_only_AD CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4987241_4987906;chr2L_4987319_4987906 chr2L_4987298_4987906 chr2L_4987907_4988048;chr2L_4987159_4987240 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.58 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CDase chr3R + chr3R_26286512_26288536;chr3R_26286617_26288536;chr3R_26286611_26288536;chr3R_26286631_26288536 chr3R_26286613_26288536 chr3R_26288537_26288691;chr3R_26286221_26286511 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.56 NA NA 16.67 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Hel25E,I_chr2L_5540301_5540396 chr2L - chr2L_5540301_5540971;chr2L_5540301_5540396 chr2L_5540301_5540424 chr2L_5540201_5540300;chr2L_5540972_5541090 2.07 1.39 1.76 1.37 1.18 1.34 1.36 1.28 0.78 5.91 0.77 1.31 0.61 0.93 0.98 1.76 1.97 1.63 0.95 0.92 1.08 4.85 3.01 2.86 3.79 0.47 5.94 4.32 3.88 1.77 7.99 5.86 5.41 1.43 2.69 3.94 2.92 2.90 3.61 3.48 10.85 1.84 1.83 6.27 6.15 5.03 3.27 14.40 1.42 2.07 3.01 2.04 3.35 2.72 0.91 3.18 2.01 6.10 K intron_retention CG14741 chr3R - chr3R_7895644_7895706 chr3R_7895643_7895644;chr3R_7895706_7895707 chr3R_7894835_7895643;chr3R_7895707_7895823 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.69 0.00 0.00 0.00 0.00 1.18 6.06 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629527_2629921 chr3L_2629526_2629527;chr3L_2629921_2629922 chr3L_2629427_2629526;chr3L_2629922_2630021 89.87 98.00 88.24 92.54 88.71 85.92 92.22 89.29 93.14 95.83 100.00 91.95 96.55 95.00 82.61 90.05 93.55 91.18 90.62 86.34 98.46 NA 89.06 87.72 93.33 88.30 93.85 100.00 81.82 88.24 85.71 88.24 96.49 91.49 75.86 91.89 92.59 89.74 94.55 92.41 86.96 89.61 95.31 84.62 80.95 86.57 83.33 87.77 88.42 88.57 89.55 92.16 85.19 88.89 90.00 95.65 92.31 82.76 K jcn_only_AA CG12428,I_chr3R_23531574_23532266 chr3R - chr3R_23531574_23531981 chr3R_23531627_23531981 chr3R_23531982_23531987;chr3R_23531474_23531573 7.04 NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA 4.55 NA 9.52 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG6236 chr3R - chr3R_11153785_11153849;chr3R_11153785_11153869 chr3R_11153785_11153876 chr3R_11153649_11153784;chr3R_11153877_11153988 59.26 56.25 61.11 60.71 42.31 53.66 59.70 59.46 54.32 58.46 59.09 51.13 33.33 35.00 71.88 64.71 NA 57.69 60.00 57.38 41.67 44.92 67.29 64.71 57.78 32.00 68.14 60.29 56.18 63.25 51.22 66.36 62.04 56.36 61.11 59.42 62.37 62.39 60.00 62.63 58.25 63.20 43.33 65.31 57.78 60.00 64.00 55.66 55.28 65.00 62.04 52.73 50.00 54.24 51.22 62.50 71.58 45.83 K intron_retention CG14642,CG34305 chr3R - chr3R_66855_66974 chr3R_66854_66855;chr3R_66974_66975 chr3R_66767_66854;chr3R_66975_67420 21.43 31.58 41.18 55.56 29.41 25.00 56.00 34.88 34.55 NA 27.78 50.00 7.14 42.86 25.00 41.18 28.57 6.67 33.33 22.73 9.52 0.00 38.10 19.05 NA 30.77 10.53 NA 14.29 9.52 12.26 7.41 0.00 27.78 18.18 NA 12.50 NA 11.11 20.00 16.67 21.43 30.77 16.67 12.12 23.81 19.44 13.04 39.13 14.58 5.88 6.67 NA 15.38 25.00 21.05 28.57 22.73 K intron_retention RpL3,E_chr3R_7047964_7050565,snoRNA:Me18S-C1096,I_chr3R_7049970_7050189 chr3R + chr3R_7048090_7048282 chr3R_7048089_7048090;chr3R_7048282_7048283 chr3R_7047897_7048089;chr3R_7048283_7048451 0.00 0.00 0.00 0.02 0.00 0.00 0.03 0.00 0.03 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.01 0.01 0.05 0.00 0.08 0.22 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.01 0.04 0.00 0.00 0.00 0.00 0.01 0.08 0.00 0.00 0.00 0.05 0.01 0.00 0.05 0.04 0.00 0.00 0.01 0.00 0.11 K intron_retention KdelR,CG5188 chr2L + chr2L_10427004_10427075 chr2L_10427003_10427004;chr2L_10427075_10427076 chr2L_10426867_10427003;chr2L_10427076_10428159 2.45 0.69 1.43 3.39 2.98 2.16 2.96 2.41 2.95 1.84 2.63 2.17 2.68 3.08 3.09 2.37 4.02 3.16 2.16 3.16 1.45 2.01 1.86 2.20 2.02 3.27 8.55 18.59 7.36 2.41 2.85 2.05 3.01 3.82 4.17 3.14 2.60 0.76 2.24 1.57 3.45 2.45 2.04 2.41 3.11 2.20 0.69 4.26 3.40 2.92 1.37 0.00 2.88 1.12 2.14 2.54 2.14 1.35 N intron_retention lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3963954_3964374 chr2R_3963953_3963954;chr2R_3964374_3964375 chr2R_3963798_3963953;chr2R_3964375_3964611 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 52.17 NA 100.00 100.00 NA NA 100.00 57.14 NA 50.00 66.67 100.00 100.00 NA 53.85 41.51 100.00 100.00 NA 100.00 50.00 100.00 100.00 35.71 64.00 100.00 62.50 68.97 100.00 100.00 NA 55.17 37.50 43.75 46.15 50.00 100.00 53.33 46.15 46.15 NA 35.71 100.00 100.00 NA NA N intron_retention Pmi,PGRP-LD chr3L + chr3L_5775409_5775724 chr3L_5775408_5775409;chr3L_5775724_5775725 chr3L_5775097_5775408;chr3L_5775725_5775759 100.00 100.00 100.00 100.00 100.00 100.00 72.73 100.00 80.85 100.00 100.00 74.19 58.82 100.00 100.00 100.00 100.00 100.00 100.00 76.32 100.00 64.29 55.56 100.00 100.00 54.17 100.00 NA 100.00 100.00 57.45 100.00 46.67 100.00 100.00 100.00 100.00 100.00 100.00 68.18 NA 75.61 100.00 100.00 100.00 100.00 100.00 NA 63.64 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.19 100.00 K intron_retention chico,I_chr2L_10246534_10246899 chr2L - chr2L_10246040_10246899 chr2L_10246039_10246040;chr2L_10246899_10246900 chr2L_10245878_10246039;chr2L_10246900_10246999 10.71 7.69 16.22 10.26 12.50 22.73 16.67 15.79 11.32 NA 10.53 12.24 13.79 18.52 14.29 10.42 11.76 15.38 6.67 14.55 14.29 13.79 8.16 7.14 15.00 17.39 10.71 7.41 30.00 3.23 11.76 10.53 12.50 17.07 14.29 9.68 6.25 6.06 6.06 5.36 NA 10.53 13.64 13.95 0.00 9.09 9.09 6.67 14.00 7.41 5.13 9.09 8.33 0.00 17.65 0.00 9.52 11.54 K intron_retention Vha100-1,I_chr3R_24958227_24960770,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24959684_24960770 chr3R_24959683_24959684;chr3R_24960770_24960771 chr3R_24959583_24959683;chr3R_24960771_24960870 16.13 12.90 NA NA 11.76 30.77 38.10 NA 16.00 7.14 NA 50.00 NA NA 6.25 38.46 NA 33.33 NA 15.79 18.75 48.00 14.63 13.46 25.81 NA 17.24 26.67 11.11 18.52 30.77 NA 9.68 21.43 16.13 22.73 11.54 13.16 11.54 16.13 20.00 11.76 NA 23.81 20.00 23.08 6.67 41.67 15.15 15.79 18.00 20.00 10.53 12.90 20.00 7.69 14.71 NA K alternative_donor CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25318474_25319136;chr3R_25318474_25319163;chr3R_25318474_25319142;chr3R_25318474_25318925;chr3R_25318474_25319093;chr3R_25318474_25318971;chr3R_25318474_25319167 chr3R_25318474_25319004 chr3R_25318374_25318473;chr3R_25319168_25319224 1.79 2.73 1.76 2.08 0.60 2.07 4.17 2.30 1.85 2.36 1.79 1.99 1.08 0.82 1.67 2.88 0.77 2.11 2.08 1.45 3.55 2.26 2.68 1.75 1.00 1.30 1.78 3.57 5.04 0.53 3.23 2.78 1.75 0.98 0.60 2.26 1.02 1.68 1.40 0.59 5.17 1.02 2.21 1.59 0.92 2.60 1.90 4.72 1.72 2.07 2.89 2.29 1.02 1.68 1.69 0.85 1.18 3.19 K intron_retention Pvr,I_chr2L_8226604_8228082,I_chr2L_8229001_8230124,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8226607_8226928 chr2L_8226606_8226607;chr2L_8226928_8226929 chr2L_8226458_8226606;chr2L_8226929_8226955 50.00 30.00 51.22 96.00 46.67 76.67 47.62 63.41 62.07 29.63 83.33 50.67 85.19 72.41 70.27 58.33 61.29 48.00 65.71 30.87 88.89 71.43 38.18 38.89 55.56 48.15 51.35 NA 33.33 48.28 40.00 53.85 41.67 51.11 37.04 51.52 36.11 35.90 50.00 45.07 46.67 49.25 52.38 20.97 50.00 32.00 41.67 48.28 55.56 88.89 50.00 38.10 33.33 36.36 55.26 34.62 NA 57.89 K jcn_only_AA mod(r),I_chrX_515823_515874,RI_chrX_515831_515923,I_chrX_516392_517480 chrX + chrX_515831_515874;chrX_515831_515923 chrX_515831_515885 chrX_515763_515830;chrX_515924_515974 23.98 20.51 32.00 27.03 23.08 34.38 16.67 22.22 24.62 40.00 7.14 28.07 32.35 37.04 19.23 27.08 NA 15.38 19.51 29.03 9.38 30.77 31.37 37.93 33.33 26.67 32.26 20.00 29.63 28.00 18.00 28.57 NA 21.28 NA 20.83 16.33 20.00 16.33 21.43 NA 22.03 23.33 21.95 9.52 37.25 25.58 NA 38.18 11.76 32.26 17.86 27.27 20.00 32.14 26.32 20.69 13.33 K intron_retention CG31716,I_chr2L_10397648_10398034 chr2L + chr2L_10398750_10399316 chr2L_10398749_10398750;chr2L_10399316_10399317 chr2L_10398742_10398749;chr2L_10399317_10399535 3.97 NA 0.00 15.91 NA NA 5.56 5.56 9.09 NA NA 0.00 20.00 NA 18.75 0.00 0.00 NA 0.00 2.94 NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA 5.00 NA NA NA NA 12.50 NA 7.14 NA NA NA NA 20.00 NA 0.00 NA NA NA 9.09 NA NA NA K jcn_only_AA Uch,CG10880 chr2L - chr2L_2213757_2213895 chr2L_2213781_2213895 chr2L_2213896_2213958;chr2L_2213616_2213756 0.00 0.00 0.00 0.00 1.71 0.00 0.55 0.00 0.32 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.42 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.41 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 K alternative_acceptor CG17494 chr2L + chr2L_22471985_22472552;chr2L_22471985_22472618 chr2L_22471985_22472623 chr2L_22471978_22471984;chr2L_22472624_22473865 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 2.94 0.00 0.82 0.00 2.78 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.91 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.75 1.67 0.00 0.00 0.00 0.00 0.66 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32666 chrX + chrX_11444971_11445061 chrX_11444970_11444971;chrX_11445061_11445062 chrX_11444795_11444970;chrX_11445062_11445380 0.00 0.00 0.00 4.17 0.00 0.00 2.27 2.13 4.44 0.00 0.00 2.56 0.00 2.94 0.00 8.00 0.00 4.00 0.00 2.44 5.26 0.00 2.15 0.00 2.08 0.00 0.00 0.00 0.00 0.00 3.51 0.00 0.00 0.00 4.92 0.00 0.74 0.00 0.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention B4,REI_chr2L_13509793_13534906,EI_chr2L_13513471_13534906,I_chr2L_13513474_13549131,CG15638,CG9263,I_chr2L_13547133_13549131,I_chr2L_13547162_13547692,I_chr2L_13547304_13549131 chr2L - chr2L_13513474_13534906 chr2L_13513473_13513474;chr2L_13534906_13534907 chr2L_13513374_13513473;chr2L_13534907_13535006 5.88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 5.88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention lola,I_chr2R_6419625_6419686,I_chr2R_6421474_6421644,RI_chr2R_6421474_6421652,I_chr2R_6421474_6422304,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354,psnoRNA:lola-a,psnoRNA:lola-b,psnoRNA:lola-c,psnoRNA:lola-d chr2R - chr2R_6421474_6422354 chr2R_6421473_6421474;chr2R_6422354_6422355 chr2R_6421381_6421473;chr2R_6422355_6422404 1.19 1.19 1.23 1.69 0.00 1.27 1.48 2.13 1.88 0.00 0.00 0.00 3.03 0.00 1.69 0.60 2.11 1.41 0.87 1.49 0.00 1.61 1.42 0.00 0.00 0.00 2.30 4.88 0.71 1.37 2.08 1.92 0.69 2.62 2.44 0.00 0.00 0.00 0.00 2.25 1.15 2.59 1.15 1.98 0.00 2.02 0.00 0.45 1.33 0.00 1.47 1.67 0.00 0.00 0.95 1.54 0.00 0.00 K alternative_acceptor unc-13,I_chr4_897077_897142,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_897077_897142 chr4_897081_897142 chr4_897143_897242;chr4_896977_897076 100.00 91.67 100.00 100.00 100.00 90.00 95.45 96.30 97.14 NA 100.00 96.77 100.00 92.86 92.31 95.00 100.00 88.89 93.75 100.00 NA 95.35 100.00 100.00 100.00 94.74 100.00 NA NA 90.91 95.45 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 92.86 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 NA NA NA 94.12 NA 88.89 NA K intron_retention asrij,MED23 chr2R + chr2R_18774226_18774281 chr2R_18774225_18774226;chr2R_18774281_18774282 chr2R_18774085_18774225;chr2R_18774282_18774771 2.70 3.51 0.00 6.82 2.27 3.85 6.25 2.94 2.27 2.70 0.00 0.00 3.45 0.00 7.58 3.57 0.00 0.00 0.00 5.63 4.17 8.22 3.57 0.88 0.00 2.86 4.00 6.90 5.15 2.25 1.54 3.39 0.00 0.00 0.00 0.00 2.92 0.80 1.51 1.72 0.00 0.93 2.17 0.00 9.26 2.73 2.38 0.00 3.85 3.67 2.73 3.39 3.77 4.29 3.23 2.34 1.06 2.70 K jcn_only_AA CG5455,I_chr3R_22287369_22288750 chr3R + chr3R_22292793_22292859;chr3R_22292793_22292855 chr3R_22292793_22292853 chr3R_22292336_22292792;chr3R_22292860_22293068 100.00 100.00 100.00 97.56 NA 100.00 100.00 100.00 98.18 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 97.14 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 NA 100.00 100.00 97.87 100.00 98.75 96.77 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG14949 chr3L - chr3L_2642192_2642240 chr3L_2642191_2642192;chr3L_2642240_2642241 chr3L_2642123_2642191;chr3L_2642241_2642302 100.00 NA NA NA NA NA NA NA 92.86 100.00 NA 100.00 NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA K jcn_only_AD fws,CG6453 chr2L - chr2L_17480920_17480972;chr2L_17480920_17481149;chr2L_17480920_17480983 chr2L_17480920_17480968 chr2L_17480825_17480919;chr2L_17481150_17481199 36.36 35.00 NA NA 44.44 NA 44.44 35.14 35.56 NA NA 40.74 NA NA 45.45 NA NA NA 40.00 35.48 NA NA NA NA NA NA NA NA NA NA NA NA NA 34.21 NA NA 36.36 NA NA NA NA 34.29 NA NA NA NA NA NA 41.38 NA NA NA NA NA NA NA NA NA K intron_retention ssh,I_chr3R_20769244_20770111 chr3R - chr3R_20769244_20769311 chr3R_20769243_20769244;chr3R_20769311_20769312 chr3R_20769144_20769243;chr3R_20769312_20769439 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Pect,I_chr2L_13207997_13208109 chr2L + chr2L_13204273_13208109 chr2L_13204272_13204273;chr2L_13208109_13208110 chr2L_13203768_13204272;chr2L_13208110_13208209 0.70 1.28 0.73 1.25 0.00 0.69 0.73 1.37 1.29 0.00 0.30 1.22 0.39 0.32 1.64 0.86 0.65 0.60 0.58 1.06 0.30 1.82 0.47 1.19 0.72 0.88 0.85 0.39 0.73 0.45 0.88 0.29 0.70 0.94 0.00 1.71 0.38 0.00 0.43 0.56 0.26 0.87 1.16 0.77 0.69 0.50 0.00 0.98 1.02 0.00 0.59 0.00 0.00 1.06 0.99 0.38 0.76 0.89 K alternative_acceptor I_chr3L_834336_834491,CG13887,Gr61a chr3L + chr3L_837946_838048;chr3L_837946_838012 chr3L_837946_838021 chr3L_837877_837945;chr3L_838049_838624 7.14 6.82 10.42 9.43 7.14 6.38 7.27 6.61 6.72 3.57 9.52 10.11 10.81 10.42 15.69 4.96 5.71 4.76 6.12 6.94 7.41 4.48 11.54 8.70 11.11 11.32 13.16 7.69 3.85 0.00 4.76 3.17 3.08 7.76 8.70 12.20 3.03 13.89 8.33 5.61 5.98 6.31 5.13 7.25 2.42 5.56 22.22 4.39 4.76 14.29 10.53 8.20 7.14 18.18 9.76 6.82 5.56 3.64 K intron_retention CG11247,I_chr3L_21718596_21718659 chr3L - chr3L_21721493_21721550 chr3L_21721492_21721493;chr3L_21721550_21721551 chr3L_21721387_21721492;chr3L_21721551_21721574 95.00 94.74 95.00 96.67 100.00 95.45 91.43 97.50 97.62 NA 100.00 96.43 100.00 95.83 100.00 94.29 100.00 87.50 96.43 90.00 94.12 92.31 93.75 85.71 94.12 96.55 92.59 94.44 92.86 91.67 91.43 NA 94.44 93.33 94.12 92.31 100.00 94.44 96.43 96.67 NA 97.44 100.00 100.00 NA 94.12 93.75 93.33 97.73 94.44 100.00 100.00 93.75 92.31 96.00 100.00 100.00 100.00 K multi_cassette shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9758417_9759483 chr2R_9758417_9758798;chr2R_9758844_9759170;chr2R_9759231_9759483 chr2R_9758799_9758843;chr2R_9759171_9759230 chr2R_9758345_9758416;chr2R_9759484_9759658 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 99.05 100.00 100.00 100.00 98.81 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor glo,I_chr3R_7644679_7644739,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7644679_7644932 chr3R_7644683_7644932 chr3R_7644933_7644980;chr3R_7644583_7644678 98.17 100.00 96.55 100.00 100.00 95.65 96.88 100.00 98.00 92.86 100.00 98.15 100.00 96.00 100.00 100.00 91.67 NA 96.30 96.69 100.00 98.31 98.18 95.83 100.00 100.00 97.92 97.62 95.45 100.00 97.22 100.00 95.00 97.83 96.67 97.44 100.00 100.00 96.67 98.44 100.00 98.08 100.00 97.87 96.00 97.44 100.00 98.18 98.33 96.43 97.06 100.00 100.00 100.00 94.74 100.00 100.00 96.55 K alternative_acceptor I_chr2L_822032_822857,dock chr2L + chr2L_826508_829456;chr2L_826508_829421 chr2L_826508_829304 chr2L_826008_826507;chr2L_829457_829468 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 97.67 100.00 100.00 96.15 100.00 100.00 100.00 97.62 100.00 94.74 100.00 100.00 100.00 100.00 100.00 K intron_retention CG3499,I_chr2R_18772777_18772819 chr2R - chr2R_18772767_18772819 chr2R_18772766_18772767;chr2R_18772819_18772820 chr2R_18772677_18772766;chr2R_18772820_18772879 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4433,I_chr3R_15845478_15846094 chr3R - chr3R_15845478_15846069 chr3R_15845477_15845478;chr3R_15846069_15846070 chr3R_15845378_15845477;chr3R_15846070_15847038 1.98 0.00 2.33 3.64 2.35 3.45 3.57 3.03 1.10 1.43 2.90 2.65 11.32 0.00 2.97 1.54 1.43 3.80 2.50 2.14 3.90 2.97 0.00 1.49 2.11 0.00 1.61 3.88 2.68 2.00 0.00 7.55 4.60 1.98 3.08 1.43 1.37 1.35 1.57 1.94 0.00 1.80 0.00 0.00 2.70 2.22 0.00 3.64 1.94 0.00 1.52 0.00 0.00 2.08 2.65 0.94 1.94 3.57 K alternative_acceptor Rnp4F,I_chrX_5214525_5214591 chrX - chrX_5216487_5216663 chrX_5216583_5216663 chrX_5216664_5216731;chrX_5216423_5216486 33.48 NA NA NA NA NA NA 46.67 47.83 NA 35.71 22.22 NA NA NA 18.18 NA NA 27.27 31.25 NA NA NA NA NA NA NA NA NA NA 30.00 NA NA 46.15 NA NA NA NA 27.27 NA NA 60.00 NA 30.00 NA NA NA NA 35.71 NA NA NA NA NA 44.44 NA NA NA K alternative_acceptor CLIP-190,I_chr2L_17394493_17404060,I_chr2L_17401291_17404060,I_chr2L_17401582_17402303 chr2L + chr2L_17384840_17385443 chr2L_17384840_17385225 chr2L_17384808_17384839;chr2L_17385444_17385495 100.00 100.00 100.00 85.71 NA NA 100.00 100.00 91.67 NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention CG15609,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12901233_12901293 chr2R_12901232_12901233;chr2R_12901293_12901294 chr2R_12901051_12901232;chr2R_12901294_12901489 0.00 0.00 0.00 5.80 0.00 0.00 2.17 0.00 1.60 0.00 2.44 0.95 0.00 0.00 1.41 0.00 0.00 0.00 0.00 1.52 0.00 15.62 0.00 0.00 10.87 8.77 3.57 0.00 2.22 5.26 6.25 6.45 2.78 2.35 0.00 3.03 0.00 0.00 0.00 1.06 5.41 0.00 0.00 0.00 0.00 1.72 0.00 1.23 1.90 0.00 0.00 2.13 0.00 0.00 0.00 2.86 0.00 0.00 K intron_retention Aats-ile chr3L + chr3L_22281816_22281894 chr3L_22281815_22281816;chr3L_22281894_22281895 chr3L_22281762_22281815;chr3L_22281895_22282039 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 96.15 96.67 95.45 95.24 100.00 97.87 100.00 100.00 100.00 100.00 96.30 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 95.45 100.00 93.75 100.00 100.00 97.06 100.00 100.00 NA 100.00 100.00 100.00 97.78 NA 100.00 100.00 100.00 NA 95.24 100.00 NA 100.00 K intron_retention Ets21C,rempA chr2L - chr2L_548219_551157 chr2L_548218_548219;chr2L_551157_551158 chr2L_547978_548218;chr2L_551158_552527 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA 4.55 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA K intron_retention robl chr2R + chr2R_13344221_13344288 chr2R_13344220_13344221;chr2R_13344288_13344289 chr2R_13344148_13344220;chr2R_13344289_13344637 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.34 0.00 0.00 0.30 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14801,I_chrX_1721454_1737724 chrX + chrX_1737612_1737724 chrX_1737611_1737612;chrX_1737724_1737725 chrX_1737478_1737611;chrX_1737725_1737824 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 3.85 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA K jcn_only_AA pxb,I_chr3R_11504971_11505107 chr3R + chr3R_11504971_11510791 chr3R_11504971_11505107 chr3R_11504871_11504970;chr3R_11510792_11511026 15.38 20.00 25.71 2.33 4.00 NA 17.02 12.82 13.46 NA 47.83 40.24 13.64 25.00 25.71 11.90 14.29 26.83 NA 35.92 40.62 5.88 16.00 16.00 15.00 0.00 26.92 14.81 24.32 6.67 13.51 NA 7.14 20.00 22.58 2.63 7.14 33.33 11.63 20.00 3.70 10.20 13.64 15.38 35.90 9.62 35.71 8.70 14.81 14.29 11.11 7.69 38.10 21.62 23.08 32.35 26.32 29.27 K cassette I_chr3L_12398261_12403200,Gap69C chr3L - chr3L_12408970_12409374 chr3L_12408970_12409044;chr3L_12409105_12409374 chr3L_12409045_12409104 chr3L_12408095_12408969;chr3L_12409375_12409579 95.00 96.30 96.30 97.56 95.65 100.00 84.38 92.59 93.10 83.33 100.00 97.62 95.45 100.00 89.29 97.22 100.00 96.30 100.00 98.46 95.83 74.07 87.27 89.80 95.24 85.71 87.76 90.32 75.00 88.57 96.30 95.45 95.00 97.14 95.24 69.44 94.74 96.00 89.80 92.16 92.00 92.00 94.74 83.33 79.49 97.37 96.97 95.00 100.00 93.62 97.44 96.15 85.29 94.44 96.97 92.11 92.73 84.85 K intron_retention CG12883 chr3R + chr3R_23505153_23505222 chr3R_23505152_23505153;chr3R_23505222_23505223 chr3R_23504917_23505152;chr3R_23505223_23506084 0.00 NA NA 0.00 NA NA 0.00 5.88 0.00 NA NA NA NA NA NA NA NA NA NA 13.04 NA 10.53 NA NA NA NA 27.78 NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 0.00 13.64 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA 0.00 0.00 K alternative_acceptor CG17233,I_chr3L_20232803_20232962,RI_chr3L_20232898_20232962 chr3L - chr3L_20232714_20232962;chr3L_20232645_20232962;chr3L_20232711_20232962 chr3L_20232648_20232962 chr3L_20232963_20233016;chr3L_20232147_20232644 6.67 12.50 8.33 7.69 13.33 15.38 4.55 3.45 8.00 0.00 5.56 5.71 0.00 13.33 9.52 4.55 0.00 6.67 14.29 19.51 0.00 0.00 10.81 11.54 7.14 0.00 0.00 6.25 0.00 4.00 8.33 0.00 8.00 3.33 6.67 12.00 5.71 7.14 13.33 3.70 15.38 5.26 7.69 13.64 6.25 4.55 21.43 4.35 2.44 4.76 11.43 10.53 4.35 14.29 5.00 10.53 0.00 8.33 K intron_retention slgA,I_chrX_21247694_21251677,I_chrX_21251760_21251908,I_chrX_21253735_21253820 chrX + chrX_21251765_21251908 chrX_21251764_21251765;chrX_21251908_21251909 chrX_21251678_21251764;chrX_21251909_21252008 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.17 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 K intron_retention CG11874 chr3R - chr3R_24936599_24936656 chr3R_24936598_24936599;chr3R_24936656_24936657 chr3R_24936411_24936598;chr3R_24936657_24936997 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 4.17 0.00 0.00 NA 0.00 1.67 0.00 0.00 0.00 K intron_retention Cdep,I_chr3R_749200_749265 chr3R + chr3R_768511_770696 chr3R_768510_768511;chr3R_770696_770697 chr3R_768024_768510;chr3R_770697_771202 0.00 0.00 0.00 1.15 0.00 0.00 1.43 0.00 1.23 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 1.40 1.57 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 1.72 0.72 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention MSBP,RI_chrX_15783766_15784064,I_chrX_15783766_15785978 chrX - chrX_15782530_15783334 chrX_15782529_15782530;chrX_15783334_15783335 chrX_15782377_15782529;chrX_15783335_15783738 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Eb1,I_chr2R_2642491_2642549 chr2R + chr2R_2642623_2642689 chr2R_2642632_2642689 chr2R_2642690_2643135;chr2R_2642550_2642622 1.85 0.99 0.00 1.98 3.31 2.07 2.32 1.99 1.44 0.00 1.32 2.34 1.16 1.21 2.38 1.88 2.98 1.05 1.58 1.22 0.55 2.40 2.18 1.12 2.23 1.57 3.60 6.74 4.89 2.00 2.35 2.08 2.17 1.85 3.26 1.75 1.18 2.53 3.06 1.23 0.61 1.98 0.64 1.81 1.81 1.84 2.34 2.20 1.85 1.18 1.50 2.23 2.67 1.63 1.14 1.74 1.23 1.85 K intron_retention CG13893,I_chr3L_600913_601954 chr3L - chr3L_599627_599687 chr3L_599626_599627;chr3L_599687_599688 chr3L_599055_599626;chr3L_599688_600482 0.00 0.00 0.00 3.95 1.43 0.00 1.32 0.00 1.31 0.00 0.00 1.06 0.00 0.00 0.00 1.43 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 1.75 1.68 0.00 0.00 1.11 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 K alternative_acceptor CG31619 chr2L + chr2L_21711411_21712789 chr2L_21711411_21712768 chr2L_21711315_21711410;chr2L_21712790_21712966 98.44 97.78 100.00 95.06 97.44 95.24 100.00 98.33 94.00 95.24 NA 99.00 100.00 100.00 97.56 98.11 100.00 100.00 97.22 98.82 100.00 95.92 98.61 98.31 100.00 97.73 97.67 100.00 94.12 98.04 94.74 100.00 98.36 95.24 100.00 100.00 97.75 96.36 98.59 98.53 100.00 96.94 97.06 98.78 97.30 97.92 100.00 100.00 98.91 95.24 100.00 100.00 97.62 100.00 100.00 97.06 100.00 100.00 K intron_retention G-salpha60A chr2R + chr2R_19834044_19834123 chr2R_19834043_19834044;chr2R_19834123_19834124 chr2R_19833970_19834043;chr2R_19834124_19834294 0.00 0.00 0.98 1.20 0.00 0.00 1.87 0.54 0.85 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 3.90 0.00 0.96 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 1.31 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 N alternative_acceptor I_chr3L_9481026_9484943,noncoding_11665 chr3L + chr3L_9481349_9481457;chr3L_9481349_9481415 chr3L_9481349_9484943 chr3L_9481282_9481348;chr3L_9484944_9485043 33.33 33.33 NA NA NA 100.00 NA 50.00 NA NA 0.00 NA NA NA NA 100.00 NA 0.00 NA NA 0.00 33.33 NA NA NA NA NA NA NA 33.33 50.00 33.33 NA NA NA NA NA 33.33 NA 16.67 NA NA NA 33.33 NA NA 33.33 33.33 NA 100.00 33.33 NA 33.33 NA NA NA 33.33 NA K intron_retention Ptpmeg,I_chr3L_353688_353782,I_chr3L_355125_355175 chr3L + chr3L_355125_355198 chr3L_355124_355125;chr3L_355198_355199 chr3L_355057_355124;chr3L_355199_355275 0.47 0.74 0.97 1.38 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 1.02 2.15 0.00 0.00 0.00 1.98 1.02 1.02 0.61 0.00 2.48 0.00 3.47 1.61 0.61 0.69 0.00 0.66 0.58 1.89 0.00 0.00 0.00 0.00 0.77 0.93 1.68 0.47 0.00 1.48 0.00 0.00 0.00 1.20 0.00 0.00 0.56 0.00 1.61 0.00 2.00 1.50 0.00 0.58 K intron_retention RpLP0 chr3L + chr3L_22069442_22069515 chr3L_22069441_22069442;chr3L_22069515_22069516 chr3L_22069348_22069441;chr3L_22069516_22070587 0.09 0.05 0.00 0.13 0.06 0.04 0.11 0.00 0.04 0.00 0.00 0.11 0.00 0.19 0.03 0.07 0.11 0.00 0.00 0.06 0.00 0.15 0.20 0.36 0.30 0.00 0.43 1.66 0.36 0.00 0.06 0.25 0.00 0.03 0.00 0.06 0.27 0.12 0.23 0.16 0.00 0.08 0.05 0.00 0.11 0.18 0.24 0.09 0.15 0.12 0.25 0.20 0.23 0.09 0.07 0.09 0.15 0.26 K intron_retention CG6912 chr3R - chr3R_10962499_10962563 chr3R_10962498_10962499;chr3R_10962563_10962564 chr3R_10962433_10962498;chr3R_10962564_10962631 52.47 57.14 42.11 65.00 NA 33.33 57.14 60.87 56.00 NA 80.00 42.86 57.14 56.25 50.00 60.00 69.23 55.56 33.33 33.33 61.54 42.86 NA 42.11 NA 77.78 52.00 NA NA 45.45 76.92 45.45 52.94 63.64 NA 72.73 61.54 NA 44.44 57.89 73.33 38.71 58.82 50.00 33.33 NA 60.00 41.18 46.15 NA 48.15 87.50 NA 40.00 41.67 46.15 39.29 33.33 K alternative_donor CG3632,RI_chrX_16195880_16196242 chrX + chrX_16190824_16191693;chrX_16190941_16191693 chrX_16190917_16191693 chrX_16191694_16191751;chrX_16190763_16190823 30.77 46.15 42.86 33.33 40.00 31.25 40.62 29.73 27.50 NA 45.45 33.33 25.00 40.00 19.05 25.00 33.33 14.29 31.58 31.43 23.08 25.00 22.73 26.67 30.77 21.43 21.43 25.00 21.43 50.00 36.36 28.57 28.57 24.24 28.57 40.00 23.53 55.56 33.33 46.15 NA 26.32 21.43 30.77 33.33 16.67 30.00 30.77 21.21 42.86 36.84 43.75 37.50 NA 15.79 45.45 23.08 33.33 K jcn_only_AA dre4,I_chr3L_1875215_1875286,I_chr3L_1875590_1875651,F_chr3L_1877432_1877517 chr3L - chr3L_1875215_1875286 chr3L_1875219_1875286 chr3L_1875287_1875386;chr3L_1875115_1875214 100.00 99.47 100.00 99.73 100.00 100.00 100.00 99.54 100.00 100.00 99.28 100.00 100.00 99.52 100.00 99.73 100.00 100.00 100.00 100.00 100.00 100.00 99.68 99.60 100.00 99.24 99.32 100.00 99.11 99.46 99.25 99.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.77 100.00 100.00 100.00 100.00 99.42 100.00 99.78 100.00 100.00 100.00 100.00 100.00 100.00 99.47 99.49 100.00 K alternative_donor Rga,I_chr3R_1436346_1436552,I_chr3R_1436346_1437602,I_chr3R_1436346_1437897,I_chr3R_1437726_1437791,Spec2 chr3R - chr3R_1436346_1436552;chr3R_1436346_1437897 chr3R_1436346_1437791 chr3R_1436246_1436345;chr3R_1437898_1437963 100.00 100.00 100.00 98.75 100.00 100.00 97.44 100.00 99.11 100.00 97.78 99.03 100.00 100.00 100.00 98.72 98.00 97.83 100.00 98.21 98.00 100.00 100.00 98.77 100.00 100.00 98.53 97.22 96.30 98.46 98.21 100.00 100.00 98.81 98.08 100.00 98.51 100.00 98.44 98.23 98.61 99.09 100.00 100.00 100.00 100.00 100.00 100.00 99.07 98.57 98.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Start1,I_chr2R_20463661_20463716 chr2R + chr2R_20463347_20463399 chr2R_20463346_20463347;chr2R_20463399_20463400 chr2R_20463214_20463346;chr2R_20463400_20463533 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA NA 6.25 NA 0.00 0.00 0.00 0.00 NA NA 4.88 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 4.35 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 K intron_retention DppIII,CG7352 chr3R + chr3R_4170206_4170530 chr3R_4170205_4170206;chr3R_4170530_4170531 chr3R_4170198_4170205;chr3R_4170531_4170745 0.00 NA NA 0.00 NA NA 7.69 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_donor scrib,I_chr3R_22362324_22363015,I_chr3R_22381374_22399575,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22362120_22363092;chr3R_22362315_22363092;chr3R_22362254_22363092;chr3R_22362224_22363092;chr3R_22362324_22363092;chr3R_22362142_22363092 chr3R_22362244_22363092 chr3R_22363093_22363115;chr3R_22362112_22362119 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG31782,VhaSFD,RI_chr2L_16731891_16731942 chr2L - chr2L_16723898_16724057 chr2L_16724002_16724057 chr2L_16724058_16724171;chr2L_16723138_16723897 0.00 0.00 0.00 0.67 1.41 0.00 1.72 0.00 1.02 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9323 chr2L - chr2L_20755434_20755487 chr2L_20755433_20755434;chr2L_20755487_20755488 chr2L_20755320_20755433;chr2L_20755488_20755880 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 1.41 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 3.45 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette cp309,I_chr3L_15074145_15074432 chr3L - chr3L_15069146_15074432 chr3L_15069146_15074045;chr3L_15074262_15074432 chr3L_15074046_15074261 chr3L_15069020_15069145;chr3L_15074433_15074532 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 97.44 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 95.65 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 K cassette sba chr3R - chr3R_19746569_19748617 chr3R_19746569_19747239;chr3R_19747503_19748617 chr3R_19747240_19747502 chr3R_19745729_19746568;chr3R_19748618_19748681 88.89 75.00 100.00 91.67 87.50 88.89 86.36 96.00 85.19 80.00 100.00 94.44 92.31 100.00 92.31 94.12 90.00 88.89 94.12 92.86 88.89 84.21 92.31 81.82 85.71 100.00 100.00 80.00 66.67 85.71 93.75 75.00 85.71 90.91 100.00 92.86 87.50 83.33 90.00 93.75 100.00 81.48 88.89 90.00 NA 83.33 77.78 75.00 95.45 87.50 100.00 81.82 85.71 80.00 90.91 85.71 NA 83.33 K jcn_only_AD CG3860,I_chr2R_19880382_19880479,I_chr2R_19880401_19880450,RI_chr2R_19882285_19882350 chr2R - chr2R_19880382_19880479 chr2R_19880382_19880450 chr2R_19880314_19880381;chr2R_19880480_19880545 98.86 95.00 100.00 96.30 100.00 100.00 94.34 95.52 97.22 100.00 100.00 100.00 100.00 100.00 97.73 97.37 100.00 100.00 95.00 98.86 96.30 NA 98.41 100.00 96.15 100.00 97.73 100.00 100.00 96.88 97.92 100.00 100.00 98.48 95.83 100.00 96.67 100.00 96.00 95.95 100.00 96.61 NA 100.00 97.37 94.12 97.87 96.97 100.00 93.75 98.04 100.00 96.88 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG4119 chrX + chrX_5560355_5560409;chrX_5560351_5560409 chrX_5560347_5560409 chrX_5560410_5560501;chrX_5560114_5560346 85.00 87.76 NA NA NA NA NA NA 89.47 92.31 NA 92.50 NA NA NA NA 85.00 74.07 NA 91.18 70.00 78.57 92.00 80.00 77.78 NA 88.89 82.50 NA 89.47 NA 83.78 78.57 85.19 91.67 95.00 80.41 87.50 82.81 83.02 91.30 80.85 NA 89.36 81.40 85.71 87.50 80.85 95.45 74.47 85.00 78.79 88.57 82.35 81.48 92.68 84.85 77.27 K alternative_donor RpL35A,I_chr3R_1292099_1292701,I_chr3R_1292125_1292701 chr3R - chr3R_1292731_1292790 chr3R_1292731_1292786 chr3R_1292709_1292730;chr3R_1292791_1292801 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 K jcn_only_AA CG16971,I_chr3L_225856_225909,I_chr3L_225919_225983,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_225919_226219;chr3L_225919_226004 chr3L_225919_225983 chr3L_225910_225918;chr3L_226220_226256 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Adar,I_chrX_1668256_1682696,I_chrX_1674594_1674717 chrX + chrX_1672994_1673122 chrX_1672993_1672994;chrX_1673122_1673123 chrX_1672848_1672993;chrX_1673123_1673291 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG8726 chr2R - chr2R_3856982_3857373 chr2R_3856982_3857078;chr2R_3857275_3857373 chr2R_3857079_3857274 chr2R_3856756_3856981;chr2R_3857374_3857681 100.00 100.00 100.00 100.00 96.77 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 98.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.68 100.00 100.00 98.80 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 K alternative_donor AnnIX chr3R + chr3R_16891137_16893167;chr3R_16891124_16893167;chr3R_16891033_16893167 chr3R_16891008_16893167 chr3R_16893168_16893221;chr3R_16890951_16891007 48.80 49.23 70.79 73.73 44.07 69.44 42.67 73.25 47.37 21.74 48.21 57.35 36.84 61.26 74.76 54.02 64.00 65.18 71.04 66.67 48.80 28.99 10.20 2.70 11.43 71.95 17.39 21.05 41.67 46.15 70.28 69.05 84.85 72.88 29.27 27.27 3.85 11.54 14.58 62.32 71.43 68.10 70.54 40.00 80.00 52.78 8.70 75.61 76.24 5.56 13.56 12.50 30.43 11.76 71.95 10.26 10.00 83.72 N alternative_donor CG10353,I_chrX_11775936_11778830,I_chrX_11778617_11778830,RI_chrX_11780885_11780988 chrX - chrX_11775936_11776058;chrX_11775936_11777220;chrX_11775936_11777133;chrX_11775936_11776142 chrX_11775936_11777234 chrX_11775836_11775935;chrX_11777235_11777654 1.35 0.00 0.00 0.00 2.94 0.00 2.00 0.00 1.09 0.00 0.00 0.00 4.35 3.57 0.00 2.04 0.00 0.00 0.00 1.35 3.85 2.63 2.44 3.33 4.00 0.00 2.70 0.00 3.70 3.33 2.38 0.00 0.00 1.79 0.00 2.70 8.16 0.00 3.03 1.92 0.00 1.64 2.94 0.00 0.00 0.00 0.00 1.72 1.52 0.00 2.78 0.00 5.26 5.88 3.23 4.35 0.00 0.00 K intron_retention CG3894 chr2R + chr2R_20653607_20653672 chr2R_20653606_20653607;chr2R_20653672_20653673 chr2R_20653301_20653606;chr2R_20653673_20654273 0.00 0.00 0.00 2.70 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 7.41 14.29 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 3.33 NA 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor rdx,I_chr3R_9796825_9822742 chr3R - chr3R_9795262_9795329 chr3R_9795280_9795329 chr3R_9795330_9795508;chr3R_9795119_9795261 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG5261,I_chr2L_7428611_7428877 chr2L + chr2L_7428611_7428925 chr2L_7428680_7428925 chr2L_7428926_7428977;chr2L_7428511_7428610 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 92.31 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 98.00 100.00 100.00 96.43 97.62 100.00 100.00 100.00 100.00 96.97 100.00 100.00 K intron_retention CG8949,I_chrX_16971474_16971708,I_chrX_16971501_16971713 chrX - chrX_16971474_16971713 chrX_16971473_16971474;chrX_16971713_16971714 chrX_16971401_16971473;chrX_16971714_16971808 10.77 8.33 15.56 5.88 16.00 9.76 15.69 22.95 13.95 0.00 0.00 8.75 12.20 11.11 11.76 27.50 5.71 7.69 16.67 8.60 6.45 26.83 11.94 8.00 11.11 3.70 20.93 9.52 20.83 7.69 9.52 0.00 15.38 13.56 12.50 35.48 7.84 8.33 11.11 10.77 7.69 10.67 17.65 18.37 0.00 17.86 0.00 6.78 11.43 6.45 13.24 8.82 0.00 0.00 16.98 0.00 12.00 12.82 K intron_retention Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911755_5913354 chr2R_5911754_5911755;chr2R_5913354_5913355 chr2R_5911703_5911754;chr2R_5913355_5913433 94.12 NA NA 100.00 NA NA NA 90.91 95.24 NA NA 90.91 100.00 NA 100.00 92.31 NA NA NA 88.24 NA NA NA NA NA NA NA NA NA NA 92.86 NA NA 94.12 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA 90.91 NA NA NA K intron_retention crol,I_chr2L_11799403_11802904 chr2L - chr2L_11799403_11802904 chr2L_11799402_11799403;chr2L_11802904_11802905 chr2L_11799303_11799402;chr2L_11802905_11803004 100.00 98.72 98.39 98.48 100.00 100.00 100.00 98.25 100.00 100.00 100.00 99.19 97.44 100.00 98.48 100.00 100.00 100.00 96.88 99.21 100.00 99.67 99.45 99.30 99.13 100.00 100.00 99.09 96.97 100.00 100.00 100.00 99.47 98.86 100.00 100.00 99.51 100.00 99.49 99.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.80 98.75 99.13 100.00 100.00 100.00 98.28 100.00 100.00 100.00 K intron_retention Dystrophin,noncoding_17759,I_chr3R_15289404_15290179 chr3R + chr3R_15289404_15290221 chr3R_15289403_15289404;chr3R_15290221_15290222 chr3R_15289382_15289403;chr3R_15290222_15290279 50.00 NA 42.86 50.00 NA NA 71.43 47.83 65.00 NA NA 38.10 35.71 56.25 63.64 56.52 53.85 NA 61.54 47.06 NA NA 45.45 NA NA NA NA NA NA NA 50.00 NA NA 47.83 NA NA NA NA NA NA NA 47.06 NA NA NA NA NA NA 47.37 NA NA NA NA NA 50.00 NA NA NA K intron_retention Xe7,CRI_chr3R_1493111_1493414 chr3R - chr3R_1494193_1494348 chr3R_1494192_1494193;chr3R_1494348_1494349 chr3R_1493732_1494192;chr3R_1494349_1494534 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 5.77 NA 0.00 7.32 3.12 4.76 3.70 0.00 0.00 0.00 0.00 1.92 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 2.00 NA 7.14 2.94 0.00 0.00 0.00 0.00 0.00 6.06 NA 3.33 0.00 NA NA 0.00 3.85 0.00 1.92 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention Nhe3,I_chr2L_6680525_6680670 chr2L - chr2L_6680999_6681064 chr2L_6680998_6680999;chr2L_6681064_6681065 chr2L_6680947_6680998;chr2L_6681065_6681218 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 12.00 11.76 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 2.94 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 3.77 K intron_retention loco,I_chr3R_18448629_18449211,I_chr3R_18456329_18462522 chr3R - chr3R_18448629_18449211 chr3R_18448628_18448629;chr3R_18449211_18449212 chr3R_18448529_18448628;chr3R_18449212_18449273 35.49 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 46.15 NA NA NA NA NA 34.62 30.77 NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_927771_929704,CG32021,RI_chr4_928193_928245,I_chr4_928482_929704,noncoding_20815,I_chr4_929811_932812 chr4 - chr4_927771_929704;chr4_928551_929704 chr4_928482_929704 chr4_929705_929804;chr4_927741_927770 22.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.71 NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette Pop2,RI_chr3L_11992097_11993849 chr3L - chr3L_11994191_11995685 chr3L_11994191_11994826;chr3L_11994966_11995685 chr3L_11994827_11994965 chr3L_11993850_11994190;chr3L_11995686_11995985 0.00 0.98 0.00 0.90 0.00 0.00 1.01 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 1.43 1.33 0.00 0.00 1.36 1.69 1.69 0.79 1.22 0.00 0.00 2.20 1.94 0.00 0.00 0.00 0.00 0.80 0.00 1.27 1.94 0.00 0.00 1.03 0.55 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.61 0.00 0.93 1.28 0.00 0.00 1.20 1.37 0.00 0.00 0.00 K alternative_last_exon mbl,CEI_chr2R_13153717_13238598,I_chr2R_13163569_13203579 chr2R + chr2R_13163569_13193491;chr2R_13163569_13238598 chr2R_13163569_13183339 chr2R_13193492_13193737;chr2R_13238599_13238769 chr2R_13183340_13186065 chr2R_13163469_13163568 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.67 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Gp150,I_chr2R_18205316_18205386,RI_chr2R_18206133_18212679,I_chr2R_18211853_18212679,RI_chr2R_18212600_18212679,I_chr2R_18213233_18213308 chr2R + chr2R_18205243_18212679 chr2R_18205460_18212679 chr2R_18212680_18212779;chr2R_18205216_18205242 99.40 100.00 99.06 99.16 100.00 98.84 98.54 100.00 98.73 100.00 98.21 98.97 100.00 100.00 96.33 99.29 98.57 98.51 99.09 99.52 98.61 97.50 99.17 98.48 98.72 99.39 100.00 97.56 98.28 100.00 99.08 100.00 100.00 100.00 100.00 100.00 98.39 98.39 98.41 100.00 100.00 99.40 100.00 100.00 100.00 100.00 100.00 100.00 98.41 100.00 100.00 100.00 100.00 100.00 99.15 96.88 96.55 100.00 K jcn_only_AA Su(var)2-HP2 chr2R - chr2R_10499194_10499285 chr2R_10499197_10499285 chr2R_10499286_10499446;chr2R_10499125_10499193 95.00 96.30 96.97 84.09 85.71 100.00 96.15 93.88 94.20 90.91 90.48 98.21 89.47 92.00 93.94 97.78 NA 93.33 95.65 97.06 96.30 100.00 93.90 95.24 94.87 100.00 91.49 NA 95.00 100.00 96.15 NA 93.33 93.88 100.00 97.73 92.50 100.00 87.18 96.61 NA 94.03 91.18 93.33 NA 92.31 95.65 100.00 95.00 100.00 94.29 100.00 NA NA 86.21 96.43 NA NA K alternative_acceptor CG3835,I_chrX_2035640_2035931,I_chrX_2036036_2037024 chrX + chrX_2035640_2037024 chrX_2035640_2035931 chrX_2035540_2035639;chrX_2037025_2037124 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive CG17698 chr3L + chr3L_23731285_23739123,chr3L_23739193_23739289 chr3L_23731285_23733260,chr3L_23734185_23739289 chr3L_23739124_23739192 chr3L_23733261_23734184 chr3L_23731166_23731284;chr3L_23739290_23739644 97.14 92.31 94.74 95.83 77.78 100.00 97.56 97.14 96.23 75.00 100.00 94.44 100.00 96.30 93.75 97.87 100.00 91.67 100.00 94.29 100.00 100.00 100.00 100.00 88.89 100.00 93.33 80.00 100.00 90.00 100.00 100.00 87.50 93.18 100.00 84.62 88.89 100.00 100.00 94.74 80.00 97.50 100.00 100.00 75.00 91.67 88.89 84.62 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 90.91 K alternative_acceptor Pfrx,I_chrX_19390217_19400515,RI_chrX_19390217_19403850,RI_chrX_19392914_19400518,RI_chrX_19399882_19400518,I_chrX_19400112_19400515,RI_chrX_19400112_19400518,I_chrX_19400271_19400518 chrX + chrX_19400112_19400518 chrX_19400112_19400515 chrX_19400012_19400111;chrX_19400519_19400615 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD RpL29,I_chr2R_17184688_17191389 chr2R + chr2R_17181384_17181558;chr2R_17181380_17181558 chr2R_17181295_17181558 chr2R_17181559_17181664;chr2R_17181294_17181294 0.22 0.22 0.31 0.08 0.31 0.31 0.07 0.18 0.15 0.20 0.40 0.34 0.24 0.10 0.17 0.06 0.19 0.18 0.26 0.20 0.23 0.00 0.00 0.14 0.48 0.37 0.36 0.36 0.29 0.35 0.33 1.00 0.74 0.21 1.28 0.36 0.10 0.19 0.10 0.11 1.72 0.15 0.29 0.21 0.19 0.78 0.18 0.59 0.29 0.11 0.11 0.08 0.39 0.28 0.33 0.08 0.20 1.21 K intron_retention CG2608,E_chr2L_20647810_20648188 chr2L + chr2L_20645961_20646043 chr2L_20645960_20645961;chr2L_20646043_20646044 chr2L_20645848_20645960;chr2L_20646044_20647365 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG8594 chr2R + chr2R_8461459_8461553 chr2R_8461459_8461517 chr2R_8461392_8461458;chr2R_8461554_8461619 99.54 98.23 100.00 99.61 100.00 98.54 99.54 100.00 100.00 100.00 99.19 99.23 98.56 100.00 99.31 100.00 100.00 100.00 98.14 98.81 97.60 100.00 99.40 99.34 98.89 98.73 98.56 97.06 98.88 100.00 99.37 98.78 100.00 100.00 100.00 100.00 99.24 100.00 98.57 100.00 99.17 99.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.43 99.03 98.97 98.97 99.02 100.00 100.00 99.24 K jcn_only_AA Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16106466_16106995;chr3L_16106466_16107411 chr3L_16106466_16106984 chr3L_16106332_16106465 26.83 22.22 19.23 33.33 34.88 10.64 41.33 23.26 26.56 22.00 21.21 22.76 32.65 20.97 25.42 22.64 37.84 26.42 38.89 23.42 26.83 12.73 38.46 29.11 27.08 22.95 29.11 18.00 25.49 33.78 36.23 37.50 15.53 23.46 34.48 36.36 31.93 24.19 28.57 31.19 42.50 29.20 37.04 25.00 16.33 33.33 26.83 21.43 27.27 22.41 22.43 32.14 27.27 19.57 38.81 23.81 36.67 20.37 K alternative_donor tomosyn,I_chrX_12531219_12531470,I_chrX_12534873_12541731,noncoding_23357,I_chrX_12548772_12549203 chrX + chrX_12543216_12545142;chrX_12542817_12545142 chrX_12543084_12545142 chrX_12545143_12545259;chrX_12542700_12542816 28.57 26.67 41.67 27.27 25.00 22.22 28.57 28.57 13.33 NA 20.00 16.67 28.57 22.22 36.36 12.50 NA 41.67 22.22 23.53 25.00 37.93 17.86 28.57 23.53 30.00 44.44 25.00 37.93 19.23 16.67 35.29 35.29 44.44 40.00 34.62 38.46 14.29 20.69 41.51 25.00 22.58 33.33 39.39 36.00 47.83 15.79 45.90 16.67 23.08 16.00 36.36 NA 30.77 33.33 28.57 28.57 25.00 K intron_retention Hsc70-4 chr3R + chr3R_11068903_11070081 chr3R_11068902_11068903;chr3R_11070081_11070082 chr3R_11068878_11068902;chr3R_11070082_11072336 53.33 NA NA NA NA NA NA NA 53.33 NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 85.19 NA NA NA NA NA 47.06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA 60.00 NA NA K intron_retention MRP,I_chr2L_12727117_12729243,F_chr2L_12727117_12736035 chr2L + chr2L_12728242_12729930 chr2L_12728241_12728242;chr2L_12729930_12729931 chr2L_12728173_12728241;chr2L_12729931_12729979 100.00 NA 100.00 100.00 100.00 NA 100.00 96.88 95.00 NA NA 97.56 100.00 100.00 100.00 100.00 100.00 NA 100.00 97.06 NA NA 95.24 91.67 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 92.31 93.75 NA 100.00 93.33 NA 100.00 NA 100.00 NA NA NA 100.00 95.24 NA 100.00 NA NA NA 91.67 NA NA NA K alternative_donor Scsalpha,I_chr3L_3817163_3817436,I_chr3L_3817289_3817436 chr3L + chr3L_3817081_3817436 chr3L_3817289_3817436 chr3L_3817437_3817536;chr3L_3817063_3817080 0.19 0.35 0.00 0.64 0.00 0.00 0.00 0.41 0.23 0.00 0.00 0.22 0.67 0.00 0.00 0.00 1.23 0.00 0.00 0.19 0.00 1.67 0.32 0.00 0.00 0.00 0.00 0.36 0.42 0.00 0.00 0.00 0.36 0.32 0.60 0.44 0.00 0.00 0.20 0.57 0.00 0.42 0.62 0.47 0.00 0.33 0.00 0.39 0.25 0.00 0.33 0.00 0.00 0.00 0.78 0.30 0.22 0.31 K intron_retention Atpalpha,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16799070_16799227 chr3R_16799069_16799070;chr3R_16799227_16799228 chr3R_16798895_16799069;chr3R_16799228_16799460 0.00 0.21 0.45 0.00 0.00 0.00 0.58 0.52 0.22 0.00 0.00 0.28 0.00 0.00 0.24 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.28 0.23 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.33 1.05 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4699 chr3R + chr3R_11626023_11626185 chr3R_11626022_11626023;chr3R_11626185_11626186 chr3R_11625098_11626022;chr3R_11626186_11627647 0.00 0.00 0.00 2.15 0.00 0.00 0.00 2.50 0.69 1.89 0.00 0.85 0.00 1.69 0.00 0.00 3.92 1.61 1.49 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.81 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 1.27 0.00 1.20 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention sd,noncoding_23930,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15706564_15707881 chrX_15706563_15706564;chrX_15707881_15707882 chrX_15706468_15706563;chrX_15707882_15708324 92.86 100.00 84.62 95.83 91.67 91.67 94.12 100.00 96.88 NA 92.86 84.38 100.00 100.00 92.86 100.00 92.86 93.33 87.50 100.00 90.00 88.89 76.47 76.92 100.00 90.00 90.91 88.89 90.00 100.00 92.31 NA 100.00 100.00 90.91 100.00 93.75 81.25 NA 96.00 NA 95.65 83.33 92.86 NA NA 87.50 93.75 92.31 NA 94.74 88.89 NA NA 95.00 100.00 90.00 NA K jcn_only_AD Gmap,I_chrX_15400854_15401194,I_chrX_15402291_15403750,mir-304,mir-12 chrX + chrX_15401627_15403750 chrX_15402291_15403750 chrX_15403751_15403850;chrX_15401423_15401626 0.00 0.00 0.00 0.00 0.00 2.27 1.75 1.67 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 2.17 0.00 0.00 0.00 0.00 4.00 0.00 1.22 0.00 0.00 1.61 0.00 3.17 1.82 0.00 0.00 1.10 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.83 0.00 3.12 1.06 0.00 0.00 1.82 0.99 1.96 0.00 0.00 0.92 0.00 1.89 0.00 0.89 2.27 K intron_retention Ect4,I_chr3L_8075556_8086158,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8091826_8092245 chr3L_8091825_8091826;chr3L_8092245_8092246 chr3L_8091726_8091825;chr3L_8092246_8092343 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pabp2,I_chr2R_4020297_4020426 chr2R + chr2R_4020581_4020645 chr2R_4020580_4020581;chr2R_4020645_4020646 chr2R_4020447_4020580;chr2R_4020646_4020713 8.00 5.00 3.17 0.00 0.00 8.00 24.00 6.06 8.62 8.33 12.12 4.10 6.25 4.44 8.97 3.64 5.88 4.65 5.45 3.45 8.51 22.73 13.89 9.09 28.57 25.53 19.23 8.33 48.00 13.79 9.62 10.00 2.38 5.97 3.70 25.00 6.90 10.00 18.52 9.38 19.05 4.95 3.77 10.00 3.57 9.52 6.98 8.70 5.61 11.54 13.79 8.00 0.00 5.26 5.63 5.88 6.82 0.00 K intron_retention Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19565461_19565524 chr2R_19565460_19565461;chr2R_19565524_19565525 chr2R_19565238_19565460;chr2R_19565525_19565682 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3437,F_chr3L_9450381_9450457,CG3434 chr3L - chr3L_9450403_9450461 chr3L_9450402_9450403;chr3L_9450461_9450462 chr3L_9449866_9450402;chr3L_9450462_9450557 33.33 NA NA 50.00 NA NA 21.43 26.67 36.84 NA NA 35.00 NA NA 26.67 45.45 NA NA 15.38 41.18 NA NA 30.77 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA K intron_retention I_chr3R_8822346_8822403,CG7518 chr3R + chr3R_8825939_8826112 chr3R_8825938_8825939;chr3R_8826112_8826113 chr3R_8825924_8825938;chr3R_8826113_8826169 0.00 0.00 0.00 4.05 0.00 0.00 1.67 0.00 1.03 0.00 5.26 1.45 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.88 NA NA 7.41 8.89 NA 0.00 1.02 0.00 4.55 4.00 4.76 0.00 3.23 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.44 0.00 2.70 0.00 NA NA 0.00 0.00 14.29 NA K jcn_only_AD tlk chrX + chrX_3670471_3675687 chrX_3671394_3675687 chrX_3675688_3677592;chrX_3670092_3670470 98.34 NA NA 95.83 NA NA NA 90.48 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA 81.82 91.30 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 100.00 NA 100.00 NA NA 100.00 NA 85.71 NA NA NA 93.33 96.67 NA NA NA NA NA NA NA NA NA K jcn_only_AA Taf1 chr3R + chr3R_2480387_2480710 chr3R_2480387_2480707 chr3R_2480192_2480386;chr3R_2480711_2480724 9.68 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.68 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention M(2)21AB,I_chr2L_107839_110405,I_chr2L_110878_111037,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_108810_110405 chr2L_108809_108810;chr2L_110405_110406 chr2L_108588_108809;chr2L_110406_110483 0.00 0.00 0.00 0.61 0.00 0.00 0.71 0.00 0.20 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.79 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.61 0.00 K intron_retention RanGap chr2L + chr2L_19446853_19446908 chr2L_19446852_19446853;chr2L_19446908_19446909 chr2L_19446676_19446852;chr2L_19446909_19447317 0.00 0.00 0.00 0.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.38 0.00 0.00 0.00 0.00 0.00 0.00 2.70 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Gp150,I_chr2R_18205316_18205386,I_chr2R_18213233_18213308 chr2R + chr2R_18205243_18205386;chr2R_18205316_18205386;chr2R_18205282_18205386 chr2R_18205274_18205386 chr2R_18205387_18205459;chr2R_18205216_18205242 2.38 3.45 1.93 2.92 0.37 0.98 3.31 1.45 1.85 4.84 2.00 1.66 1.05 2.05 1.14 2.03 0.88 1.95 1.42 3.70 2.71 2.90 4.98 2.38 7.44 5.81 2.08 8.33 10.13 2.94 2.50 8.89 0.78 2.05 2.30 4.00 2.68 3.33 2.56 3.28 2.38 1.84 2.67 1.35 5.13 2.70 1.75 1.04 2.29 5.26 0.57 0.83 4.41 0.00 1.78 3.85 2.53 3.61 K intron_retention CG11299,noncoding_8970,I_chr2R_19602423_19609308,I_chr2R_19619053_19619186 chr2R + chr2R_19601642_19602188 chr2R_19601641_19601642;chr2R_19602188_19602189 chr2R_19601628_19601641;chr2R_19602189_19602201 10.21 0.00 11.11 9.68 NA NA 15.38 12.77 10.42 NA NA 7.50 10.00 13.33 14.29 15.15 18.75 25.00 20.00 13.73 5.26 NA 9.09 16.67 NA 19.05 0.00 NA NA 13.33 13.33 NA 10.00 2.70 NA NA 0.00 0.00 0.00 4.44 NA 0.00 26.09 10.53 NA NA NA 22.73 10.00 4.55 20.00 NA 10.00 NA 9.09 0.00 17.65 5.88 K intron_retention Vrp1,I_chr2R_17997529_17997692 chr2R - chr2R_17998444_17998832 chr2R_17998443_17998444;chr2R_17998832_17998833 chr2R_17998401_17998443;chr2R_17998833_17999014 0.00 0.00 0.00 3.39 5.26 0.00 2.13 0.00 1.83 0.00 2.94 1.52 6.25 2.33 0.00 0.00 0.00 0.00 3.45 0.00 0.00 3.28 0.00 0.00 2.56 2.38 0.00 5.36 0.00 3.39 2.17 0.00 0.00 4.00 0.00 2.22 0.00 0.00 0.00 3.36 0.00 0.00 0.00 2.74 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 K intron_retention HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13164676_13165514 chrX_13164675_13164676;chrX_13165514_13165515 chrX_13164424_13164675;chrX_13165515_13165622 3.23 4.55 4.76 7.48 3.23 3.92 11.39 4.17 3.82 1.79 3.77 3.00 4.72 4.12 3.23 4.58 4.39 2.73 5.31 3.09 2.60 3.51 1.35 2.29 4.88 5.13 4.35 5.26 6.33 0.00 4.17 0.00 2.52 6.88 2.27 12.50 2.92 0.00 1.72 1.76 0.00 3.43 2.06 0.00 1.79 5.15 5.63 1.34 4.07 3.12 2.94 4.00 0.00 1.92 3.16 2.82 3.57 2.63 K mutually_exclusive CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21275807_21279883,chr2L_21280448_21281131 chr2L_21275807_21277277,chr2L_21278430_21281131 chr2L_21279884_21280447 chr2L_21277278_21278429 chr2L_21275724_21275806;chr2L_21281132_21281337 96.36 95.56 94.74 94.83 94.44 97.06 97.26 95.45 97.09 96.36 93.33 95.31 94.74 97.73 93.88 95.45 97.56 96.88 97.83 96.15 95.45 96.97 97.09 95.18 98.18 96.55 95.89 94.00 94.74 96.77 94.83 96.97 97.50 96.20 96.61 98.70 96.55 96.97 96.25 95.70 97.92 94.44 97.56 95.00 95.24 96.83 95.00 98.44 95.65 98.51 96.34 98.11 97.30 97.83 96.30 96.08 98.11 98.33 K alternative_donor CG8239 chrX + chrX_15643337_15643397 chrX_15643341_15643397 chrX_15643398_15643468;chrX_15643233_15643336 0.00 NA 5.00 NA NA 6.67 0.00 3.85 3.45 NA NA 3.45 NA 0.00 0.00 3.85 NA 0.00 0.00 0.00 NA NA NA 6.25 NA NA 7.14 NA NA NA 7.41 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA NA 2.94 NA 0.00 NA NA NA 5.56 0.00 NA NA K intron_retention CG8446 chr2R + chr2R_12084078_12084196 chr2R_12084077_12084078;chr2R_12084196_12084197 chr2R_12083895_12084077;chr2R_12084197_12084416 27.33 30.91 28.57 18.33 20.00 45.16 28.57 18.18 27.12 20.69 11.54 35.48 25.93 36.67 29.03 26.32 19.05 29.73 35.00 27.94 21.21 NA 21.69 21.43 25.42 45.95 40.00 27.66 40.74 20.00 36.84 29.41 16.00 28.57 25.71 30.43 21.82 22.00 24.59 17.72 16.67 26.15 26.09 17.07 21.05 27.54 29.73 34.62 45.24 32.84 27.87 28.00 31.94 27.78 33.33 25.68 25.93 20.00 K mutually_exclusive mys,I_chrX_7958795_7961094 chrX + chrX_7958795_7960130,chrX_7960216_7961094 chrX_7958795_7959480,chrX_7959566_7961094 chrX_7960131_7960215 chrX_7959481_7959565 chrX_7958695_7958794;chrX_7961095_7961194 81.03 74.52 79.65 86.92 68.87 81.10 88.46 83.33 76.30 87.67 90.00 91.35 56.25 71.89 78.53 90.41 57.40 81.75 73.15 71.60 86.09 90.41 86.25 83.00 81.65 59.02 82.11 71.79 91.36 75.23 72.94 80.00 77.53 79.21 79.74 82.61 80.21 84.29 78.31 74.81 83.33 78.03 79.72 83.55 73.33 78.81 83.47 73.44 85.39 91.25 83.86 77.94 94.16 81.82 74.63 81.03 92.95 93.33 K intron_retention CG4726 chr2L + chr2L_1143411_1145443 chr2L_1143410_1143411;chr2L_1145443_1145444 chr2L_1143391_1143410;chr2L_1145444_1146472 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 1.20 0.00 0.00 0.00 1.28 1.13 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.85 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8301 chr3R + chr3R_5411621_5411677 chr3R_5411620_5411621;chr3R_5411677_5411678 chr3R_5411471_5411620;chr3R_5411678_5411863 0.00 6.67 0.00 0.00 NA 0.00 8.00 0.00 0.00 NA NA 15.00 NA NA NA 5.56 0.00 NA 0.00 0.00 0.00 8.00 9.52 0.00 NA NA NA 14.29 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA NA NA 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 NA K intron_retention CG4065,RI_chr2R_20024231_20024292,I_chr2R_20024873_20024921 chr2R - chr2R_20024859_20024921 chr2R_20024858_20024859;chr2R_20024921_20024922 chr2R_20024773_20024858;chr2R_20024922_20025021 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 1.27 0.00 0.00 0.00 0.00 0.00 1.92 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20824725_20825271;chr2L_20824494_20825271;chr2L_20824631_20825271 chr2L_20824602_20825271 chr2L_20825272_20825366;chr2L_20824482_20824493 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 4.55 0.00 0.00 0.00 11.11 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K alternative_donor Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911708_5913354 chr2R_5911708_5913333 chr2R_5911703_5911707;chr2R_5913355_5913433 33.33 NA 35.71 NA NA NA NA 32.00 33.33 NA 50.00 33.33 NA NA 45.45 36.84 33.33 NA 30.77 47.83 33.33 NA 28.57 23.08 NA NA NA NA NA 25.00 46.15 NA 25.00 37.04 44.44 NA 30.77 NA 15.38 29.41 NA 34.62 NA 17.65 NA NA NA NA 38.10 NA 40.00 NA NA NA 30.00 NA NA NA K intron_retention CG14200 chrX + chrX_19409678_19409945 chrX_19409677_19409678;chrX_19409945_19409946 chrX_19408752_19409677;chrX_19409946_19412154 6.56 3.57 0.00 12.50 0.00 7.41 19.44 2.70 11.63 41.67 0.00 7.50 9.09 5.00 12.00 14.29 10.53 0.00 0.00 3.77 0.00 5.41 18.75 7.69 13.79 8.00 6.25 17.65 8.57 3.64 8.33 2.94 5.17 10.53 0.00 7.32 6.56 10.71 6.52 9.62 3.33 6.38 10.53 6.06 12.50 5.71 8.00 12.50 2.38 4.17 11.43 0.00 0.00 8.33 2.94 4.76 19.05 5.71 K cassette CG11063 chrX - chrX_13721753_13722674 chrX_13721753_13722256;chrX_13722287_13722674 chrX_13722257_13722286 chrX_13721612_13721752;chrX_13722675_13722770 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 1.28 0.00 1.23 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 K intron_retention CG1513,I_chr2R_5778649_5778739 chr2R - chr2R_5771508_5771589 chr2R_5771507_5771508;chr2R_5771589_5771590 chr2R_5771402_5771507;chr2R_5771590_5771711 2.76 2.22 5.88 3.03 3.23 3.53 3.39 2.82 3.17 6.56 0.00 3.12 3.08 0.00 4.88 3.54 3.12 1.85 0.00 1.04 4.17 3.08 1.52 1.45 1.75 2.33 3.31 5.77 2.11 0.00 2.25 1.03 2.82 2.76 3.33 3.19 3.36 0.93 2.41 2.40 2.38 3.09 0.00 1.83 0.00 1.85 4.39 2.53 3.47 0.00 3.31 2.44 1.08 2.80 4.04 2.52 3.36 1.13 K intron_retention CG32032 chr3L + chr3L_9087042_9087107 chr3L_9087041_9087042;chr3L_9087107_9087108 chr3L_9086893_9087041;chr3L_9087108_9087306 100.00 100.00 99.58 100.00 100.00 100.00 100.00 99.66 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.71 100.00 100.00 100.00 100.00 100.00 K intron_retention Top3beta,Rpt4,CG15891 chrX - chrX_6184809_6184871 chrX_6184808_6184809;chrX_6184871_6184872 chrX_6184088_6184808;chrX_6184872_6184991 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG8709,I_chr2R_4027128_4027182,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030636,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4030580_4033256;chr2R_4030580_4033259 chr2R_4030580_4030636 chr2R_4030480_4030579;chr2R_4033260_4033265 0.00 0.00 0.00 0.00 0.00 1.75 0.88 0.00 0.00 0.00 0.00 4.20 3.03 0.00 0.00 0.00 3.45 0.00 0.00 0.96 0.00 3.92 0.00 1.25 0.00 0.00 0.00 5.56 2.04 0.00 0.00 0.00 4.08 0.00 0.00 0.00 1.56 0.00 0.00 0.00 3.45 0.00 0.00 3.23 4.00 2.38 0.00 4.44 3.30 0.00 1.09 2.27 2.63 0.00 0.00 0.00 0.00 6.00 K jcn_only_AD arm,I_chrX_1790787_1794076,I_chrX_1793073_1793336,I_chrX_1793073_1793350,I_chrX_1793073_1793389,I_chrX_1793073_1793734,I_chrX_1793073_1794406,RI_chrX_1795648_1795745,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1793073_1793794;chrX_1793073_1793413 chrX_1793073_1793431 chrX_1793013_1793072;chrX_1793795_1793834 18.02 NA 13.79 16.00 NA NA 9.52 7.41 18.52 NA NA 25.00 NA 27.27 18.18 2.63 10.00 NA 14.81 22.22 NA NA 35.48 NA NA NA NA NA NA NA 29.41 NA NA 20.37 22.50 NA NA NA NA 19.51 NA 21.21 NA 17.86 NA 9.76 NA 9.38 13.16 NA NA NA NA NA 22.86 NA NA 5.56 K jcn_only_AA CG9425,I_chr3L_14783173_14784369 chr3L + chr3L_14783173_14784369;chr3L_14783173_14785138 chr3L_14783173_14784970 chr3L_14783073_14783172;chr3L_14785139_14785560 90.00 NA NA 100.00 NA NA 100.00 96.88 90.00 NA NA 90.32 NA NA NA 68.75 NA NA 100.00 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA 78.57 NA NA NA NA NA NA 84.62 NA NA NA NA NA NA NA NA NA K alternative_acceptor Adk1,RI_chr3L_12194215_12194473,I_chr3L_12197507_12197558 chr3L - chr3L_12194190_12194473 chr3L_12194215_12194473 chr3L_12194474_12194573;chr3L_12194115_12194189 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 5.88 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 K intron_retention CG10960,I_chr3L_12819402_12819475,I_chr3L_12820683_12835879 chr3L - chr3L_12819406_12819475 chr3L_12819405_12819406;chr3L_12819475_12819476 chr3L_12819337_12819405;chr3L_12819476_12819536 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10743 chr3L + chr3L_13506518_13506581 chr3L_13506517_13506518;chr3L_13506581_13506582 chr3L_13506449_13506517;chr3L_13506582_13506892 96.72 97.83 98.28 98.80 95.12 100.00 86.96 100.00 94.85 88.89 94.44 92.86 91.49 92.00 93.85 98.91 95.45 92.31 94.20 99.00 93.75 91.18 98.46 98.11 97.56 98.28 100.00 97.73 95.24 97.62 95.59 93.94 100.00 97.33 100.00 100.00 96.72 97.06 100.00 93.51 95.65 96.23 97.87 94.64 95.00 95.00 97.14 92.16 98.41 100.00 100.00 97.78 94.87 100.00 94.29 97.67 96.30 83.64 K intron_retention Kap-alpha3,RE_chr3R_5403032_5403325,I_chr3R_5403032_5403329,E_chr3R_5403032_5403405 chr3R - chr3R_5403089_5403329 chr3R_5403088_5403089;chr3R_5403329_5403330 chr3R_5403084_5403088;chr3R_5403330_5403367 0.00 0.00 0.00 0.00 0.00 0.00 1.46 0.81 1.10 0.00 0.00 3.37 0.00 0.00 0.00 1.17 0.00 0.00 2.08 1.03 0.00 0.00 3.12 2.44 0.00 0.00 0.00 2.22 0.00 0.00 1.35 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 1.61 3.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31534,I_chr3R_536075_536566 chr3R + chr3R_536075_536619 chr3R_536074_536075;chr3R_536619_536620 chr3R_535975_536074;chr3R_536620_536666 0.00 0.00 14.29 17.24 3.85 0.00 0.00 0.00 2.38 0.00 NA 0.00 0.00 0.00 3.85 7.14 0.00 3.23 0.00 0.00 0.00 7.69 4.88 0.00 4.76 0.00 0.00 NA 0.00 0.00 0.00 3.03 7.27 5.00 0.00 0.00 0.00 0.00 5.77 5.41 7.41 0.00 0.00 0.00 5.71 2.22 0.00 1.59 1.89 7.41 4.44 0.00 0.00 10.00 0.00 0.00 0.00 0.00 K intron_retention Rbcn-3A chrX - chrX_6146879_6149294 chrX_6146878_6146879;chrX_6149294_6149295 chrX_6146661_6146878;chrX_6149295_6149522 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.72 0.00 0.00 NA 0.00 NA 0.00 3.92 0.00 0.00 0.00 NA NA 3.45 NA NA NA K jcn_only_AD CG14478 chr2R + chr2R_13345226_13349498 chr2R_13345378_13349498 chr2R_13349499_13349990;chr2R_13345201_13345225 100.00 98.53 97.01 100.00 100.00 98.00 98.63 97.39 96.62 100.00 100.00 97.03 100.00 100.00 97.30 97.89 94.34 98.31 98.63 100.00 100.00 94.92 98.94 100.00 97.78 97.96 100.00 96.61 96.72 98.25 100.00 100.00 99.12 98.20 98.65 100.00 100.00 100.00 100.00 97.71 100.00 97.74 98.08 96.92 100.00 100.00 100.00 99.17 99.17 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette Fis1,I_chr2R_1491917_1491981,I_chr2R_1491917_1492087,I_chr2R_1492154_1492214 chr2R - chr2R_1491917_1492087 chr2R_1491917_1491981;chr2R_1492022_1492087 chr2R_1491982_1492021 chr2R_1491817_1491916;chr2R_1492088_1492153 97.22 96.43 96.77 96.30 100.00 100.00 95.00 98.51 98.98 90.91 100.00 100.00 100.00 100.00 96.00 94.81 97.14 92.86 97.87 98.80 96.55 95.24 97.30 97.30 95.45 94.44 96.77 90.00 92.86 89.47 97.83 96.00 94.44 98.61 96.15 100.00 100.00 96.43 100.00 97.22 94.74 98.70 96.97 96.30 100.00 97.50 100.00 100.00 96.83 97.22 100.00 95.45 100.00 97.44 97.56 100.00 98.25 96.30 K intron_retention CG5524,I_chr3R_20017846_20017911,I_chr3R_20018643_20018703 chr3R - chr3R_20018647_20018703 chr3R_20018646_20018647;chr3R_20018703_20018704 chr3R_20018427_20018646;chr3R_20018704_20018803 0.00 0.00 0.00 21.43 NA 0.00 0.00 3.45 0.00 NA NA 4.35 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 8.33 4.35 0.00 NA 7.69 0.00 NA 16.67 0.00 33.33 0.00 0.00 0.00 NA 30.77 0.00 0.00 0.00 7.14 NA 0.00 0.00 0.00 NA 5.26 NA 2.04 0.00 0.00 9.52 0.00 NA NA 0.00 NA NA 0.00 K intron_retention RpL28,snoRNA:Or-CD12,RI_chr3L_3221710_3221877 chr3L - chr3L_3221284_3221466 chr3L_3221283_3221284;chr3L_3221466_3221467 chr3L_3221116_3221283;chr3L_3221467_3221709 0.07 0.07 0.05 0.30 0.05 0.05 0.17 0.11 0.08 0.00 0.00 0.05 0.07 0.07 0.04 0.06 0.09 0.07 0.10 0.10 0.12 0.22 0.12 0.08 0.16 0.07 0.11 0.35 0.15 0.10 0.06 0.02 0.05 0.05 0.10 0.12 0.00 0.06 0.06 0.07 0.03 0.07 0.00 0.00 0.01 0.03 0.05 0.06 0.15 0.11 0.07 0.00 0.04 0.05 0.05 0.07 0.06 0.04 K alternative_donor Arf51F chr2R + chr2R_11210536_11210628 chr2R_11210546_11210628 chr2R_11210629_11210646;chr2R_11210467_11210535 87.50 63.64 NA 84.62 NA NA 87.50 85.71 91.67 NA NA 68.42 NA 100.00 90.00 NA NA 77.78 NA 77.78 NA NA 63.64 75.00 NA NA 91.67 NA NA 85.71 75.00 NA 100.00 87.50 NA NA 88.89 NA 92.86 100.00 NA 90.91 NA NA NA 77.78 90.91 88.89 83.33 NA NA NA NA NA 88.89 NA NA NA K multi_cassette CtBP chr3R + chr3R_8845924_8847141 chr3R_8845924_8846575;chr3R_8846837_8846897;chr3R_8847030_8847141 chr3R_8846576_8846836;chr3R_8846898_8847029 chr3R_8845618_8845923;chr3R_8847142_8847364 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor pAbp,I_chr2R_14027838_14028996 chr2R + chr2R_14028460_14028996 chr2R_14028460_14028992 chr2R_14028264_14028459;chr2R_14028997_14029096 90.57 92.11 89.66 90.57 94.12 92.31 92.00 87.27 91.67 92.31 91.67 92.73 96.43 91.67 95.83 91.14 83.33 95.24 85.71 84.44 92.31 88.89 87.50 87.50 NA 88.00 72.41 85.71 80.95 87.50 92.31 90.00 78.12 92.68 78.26 95.45 90.48 96.55 72.22 86.67 88.46 92.73 88.89 85.45 NA 93.75 100.00 81.25 92.73 91.67 88.89 100.00 92.86 80.00 81.25 100.00 87.50 92.31 K mutually_exclusive bbc,I_chr2R_9376554_9377246,REI_chr2R_9379401_9381986 chr2R - chr2R_9375638_9377246,chr2R_9377379_9378939;chr2R_9375638_9378244,chr2R_9378377_9378939 chr2R_9375638_9376421,chr2R_9376554_9378939 chr2R_9377247_9377378;chr2R_9378245_9378376 chr2R_9376422_9376553 chr2R_9375479_9375637;chr2R_9378940_9379098 4.95 4.95 5.42 6.82 3.20 7.28 7.46 8.08 5.16 1.16 6.78 6.30 9.91 6.34 6.63 10.18 3.39 11.86 7.91 8.84 7.32 7.38 5.99 6.81 3.61 6.21 4.86 2.19 2.66 2.42 6.67 2.67 1.61 5.93 4.08 10.84 2.18 5.05 4.23 2.40 1.26 5.83 5.32 3.37 2.17 1.91 4.38 0.86 5.51 4.37 4.12 2.10 3.33 4.19 5.49 4.15 2.49 1.35 K intron_retention Cirl,R_chr2R_4502755_4503407 chr2R + chr2R_4503662_4503831 chr2R_4503661_4503662;chr2R_4503831_4503832 chr2R_4503659_4503661;chr2R_4503832_4504021 91.67 92.31 100.00 96.00 NA NA 76.19 82.61 82.14 NA 88.89 100.00 100.00 91.67 91.67 82.35 90.00 NA 100.00 95.00 NA 91.67 88.89 NA NA 93.75 88.89 66.67 100.00 93.75 81.82 83.33 90.91 85.00 92.31 93.33 68.75 81.82 83.33 85.71 92.31 95.00 100.00 94.12 NA 91.67 NA 92.59 94.12 NA 85.71 NA NA NA 100.00 NA NA 100.00 K multi_cassette I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499338_1501345 chr3L_1499338_1499771;chr3L_1499880_1500244;chr3L_1500389_1501345 chr3L_1499772_1499879;chr3L_1500245_1500388 chr3L_1499043_1499337;chr3L_1501346_1501397 80.00 60.00 NA 100.00 NA NA NA 100.00 62.50 100.00 66.67 100.00 85.71 75.00 60.00 75.00 NA NA 100.00 55.56 60.00 100.00 66.67 100.00 60.00 NA 80.00 75.00 NA 80.00 56.25 NA 50.00 80.00 50.00 100.00 NA NA 83.33 80.00 NA 83.33 NA 87.50 100.00 60.00 100.00 44.44 62.50 83.33 88.89 83.33 NA NA 75.00 80.00 NA NA K intron_retention LIMK1,CG1824,I_chrX_12488942_12489000 chrX - chrX_12488926_12489000 chrX_12488925_12488926;chrX_12489000_12489001 chrX_12488842_12488925;chrX_12489001_12489100 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 2.56 0.00 2.13 5.71 0.00 4.08 2.08 0.00 7.25 0.00 0.00 0.00 1.72 2.00 0.00 5.26 0.00 3.39 0.00 0.00 1.48 2.13 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 1.15 K alternative_donor slmb,I_chr3R_16951107_16953048 chr3R - chr3R_16946692_16946754 chr3R_16946692_16946751 chr3R_16946556_16946691;chr3R_16946755_16946941 100.00 100.00 96.55 100.00 100.00 100.00 97.14 97.67 100.00 100.00 100.00 100.00 100.00 94.74 96.77 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 K intron_retention CG8079,I_chr2R_11109323_11109403 chr2R + chr2R_11109329_11109403 chr2R_11109328_11109329;chr2R_11109403_11109404 chr2R_11109233_11109328;chr2R_11109404_11109485 40.00 NA NA 25.00 NA NA NA NA 63.64 NA NA NA NA NA NA NA NA NA NA 40.00 NA NA 57.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 38.46 NA NA NA NA NA NA NA K intron_retention CG31249 chr3R - chr3R_13512560_13512617 chr3R_13512559_13512560;chr3R_13512617_13512618 chr3R_13512233_13512559;chr3R_13512618_13512769 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.78 NA 0.00 16.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11055 chr2R + chr2R_16145258_16145691 chr2R_16145257_16145258;chr2R_16145691_16145692 chr2R_16145189_16145257;chr2R_16145692_16148064 10.53 NA 6.67 0.00 0.00 9.09 26.32 3.85 14.29 NA 18.75 9.09 14.29 13.33 12.50 NA NA NA 13.33 9.52 6.67 18.52 14.29 10.53 NA 20.00 35.71 21.88 10.53 9.09 NA NA 2.27 7.69 4.76 36.84 5.88 NA 15.38 7.41 30.77 13.79 14.29 0.00 20.00 NA NA 3.23 6.90 NA 10.00 NA NA NA 11.76 NA NA 3.70 K alternative_donor Csk,I_chr3R_7463337_7463512,I_chr3R_7468928_7472509 chr3R - chr3R_7461967_7462050 chr3R_7461967_7462023 chr3R_7461898_7461966;chr3R_7462051_7462126 100.00 100.00 99.35 99.48 100.00 100.00 100.00 100.00 99.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.65 99.02 100.00 100.00 100.00 100.00 99.30 99.62 100.00 99.41 99.50 100.00 98.97 99.53 100.00 99.52 100.00 99.73 100.00 100.00 99.63 99.26 100.00 100.00 100.00 100.00 100.00 99.48 99.48 100.00 100.00 99.63 99.33 99.26 100.00 100.00 100.00 100.00 100.00 K intron_retention ena chr2R + chr2R_15047541_15047681 chr2R_15047540_15047541;chr2R_15047681_15047682 chr2R_15047496_15047540;chr2R_15047682_15048407 2.29 3.45 0.00 2.21 0.00 5.06 0.00 5.71 2.97 0.00 0.00 2.08 0.00 6.56 0.00 2.63 1.32 1.32 3.70 2.04 0.00 1.55 2.08 2.94 2.86 3.12 6.25 3.85 3.03 2.54 0.00 5.77 0.88 2.97 3.33 0.00 1.40 2.04 1.45 4.90 6.12 2.56 3.77 3.37 3.03 2.56 0.00 3.92 2.29 0.00 0.00 4.08 2.27 0.00 2.15 2.78 0.00 5.13 K intron_retention Crc,Scm chr3R - chr3R_5454891_5454929 chr3R_5454890_5454891;chr3R_5454929_5454930 chr3R_5454656_5454890;chr3R_5454930_5455337 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.96 100.00 100.00 100.00 100.00 99.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.97 99.95 100.00 100.00 100.00 100.00 100.00 100.00 99.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.98 K intron_retention CG3499,I_chr2R_18772777_18772819 chr2R - chr2R_18772185_18772242 chr2R_18772184_18772185;chr2R_18772242_18772243 chr2R_18771871_18772184;chr2R_18772243_18772316 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 2.17 2.13 0.00 3.85 10.81 3.12 0.00 5.26 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 4.76 2.04 0.00 0.00 0.00 4.08 0.00 0.00 3.33 0.00 2.33 2.70 4.35 0.00 K cassette CG9171,RI_chr2L_5792418_5799117,I_chr2L_5799412_5800043 chr2L - chr2L_5787985_5800043 chr2L_5787985_5799117;chr2L_5799278_5800043 chr2L_5799118_5799277 chr2L_5787965_5787984;chr2L_5800044_5800143 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 70.37 NA NA 100.00 92.86 92.31 100.00 94.74 92.31 100.00 100.00 92.31 100.00 83.33 100.00 88.89 NA 100.00 100.00 NA NA NA 90.00 NA 57.14 100.00 100.00 NA 87.50 NA NA 83.33 NA 87.50 100.00 100.00 NA 80.00 NA 100.00 94.12 NA NA 100.00 NA NA 92.31 NA NA 100.00 K alternative_donor CG17829 chrX + chrX_520827_520931 chrX_520854_520931 chrX_520932_521515;chrX_520537_520826 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 NA NA NA NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 NA 90.00 NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA NA NA NA 100.00 NA K jcn_only_AD RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522912_523360;chrX_522912_523414;chrX_522912_523194;chrX_522912_523323;chrX_522912_523389 chrX_522912_523215 chrX_522849_522911;chrX_523415_523436 0.00 0.00 0.00 0.17 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.39 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.18 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.25 0.00 0.00 K alternative_donor LSm7 chr2L - chr2L_16742443_16742634;chr2L_16742443_16742662 chr2L_16742443_16742625 chr2L_16742326_16742442;chr2L_16742663_16742986 95.51 93.98 94.74 92.66 92.86 93.65 96.51 94.44 99.28 94.44 91.30 96.69 97.01 96.72 94.87 95.83 92.86 97.10 94.44 95.43 90.38 97.62 92.39 95.88 96.92 93.15 97.94 91.46 96.88 95.65 97.37 98.04 90.32 95.15 96.15 95.45 93.07 95.51 95.80 93.90 96.23 96.52 96.08 93.42 91.38 92.23 95.58 91.89 95.87 97.67 97.94 96.61 96.23 98.31 89.25 98.06 94.69 93.94 K alternative_acceptor CG30020,I_chr2R_6778098_6778140 chr2R + chr2R_6778765_6778915 chr2R_6778765_6778912 chr2R_6778492_6778764;chr2R_6778916_6779822 93.75 94.74 95.24 93.94 85.71 100.00 100.00 96.43 88.37 83.33 92.86 100.00 90.00 100.00 85.00 96.00 100.00 92.31 88.24 93.88 88.89 96.30 93.94 92.31 90.48 96.00 92.31 93.33 83.33 92.00 100.00 95.45 82.05 97.22 90.48 100.00 96.67 100.00 88.24 88.10 100.00 97.30 90.91 100.00 91.67 91.30 100.00 83.33 97.22 96.55 93.33 93.75 90.00 100.00 100.00 86.36 93.33 87.88 K intron_retention HP4,I_chr3L_7968788_7968857 chr3L - chr3L_7968788_7968861 chr3L_7968787_7968788;chr3L_7968861_7968862 chr3L_7968688_7968787;chr3L_7968862_7968957 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 1.43 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Khc-73 chr2R - chr2R_11418901_11419626 chr2R_11418900_11418901;chr2R_11419626_11419627 chr2R_11418640_11418900;chr2R_11419627_11419712 0.00 NA NA 5.88 NA NA NA 5.88 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 6.25 0.00 0.00 NA NA 12.50 5.26 3.45 0.00 NA NA 11.11 0.00 0.00 20.00 NA NA NA 0.00 NA 0.00 NA NA NA 0.00 0.00 3.45 0.00 NA 0.00 NA NA NA NA NA NA 0.00 K alternative_acceptor Phax,RI_chr2R_5006333_5006392 chr2R + chr2R_5002689_5002743 chr2R_5002689_5002734 chr2R_5001956_5002688;chr2R_5002744_5002835 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22818231_22818297 chr2L_22818230_22818231;chr2L_22818297_22818298 chr2L_22818113_22818230;chr2L_22818298_22818651 0.00 0.00 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 1.33 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention F_chr3R_19799277_19802225,CG5902,Rab7 chr3R + chr3R_19812438_19812753 chr3R_19812437_19812438;chr3R_19812753_19812754 chr3R_19812343_19812437;chr3R_19812754_19812932 14.00 10.81 17.86 19.00 8.89 14.29 26.83 10.11 9.23 9.09 8.00 12.36 11.63 10.91 17.24 7.78 7.55 41.94 13.79 14.39 13.73 25.64 14.81 10.94 14.00 18.33 25.53 27.03 23.08 14.29 19.72 18.18 14.29 13.79 20.83 21.43 6.58 13.46 8.57 17.07 NA 12.24 11.11 12.07 13.79 13.33 16.36 NA 14.95 11.32 12.73 14.29 16.67 17.24 15.00 16.67 6.56 7.69 K cassette mrj,RI_chr2R_12093733_12108627,I_chr2R_12108697_12109174 chr2R - chr2R_12092537_12093214 chr2R_12092537_12092824;chr2R_12093086_12093214 chr2R_12092825_12093085 chr2R_12092330_12092536;chr2R_12093215_12093324 1.82 1.35 1.54 1.67 1.47 1.27 0.00 0.71 1.91 2.70 1.54 2.13 1.79 1.28 1.33 0.98 0.00 1.56 0.00 1.96 1.54 7.27 3.37 1.98 5.26 1.32 1.67 8.57 6.45 3.77 1.06 4.08 9.38 0.00 1.82 7.27 4.55 2.60 3.37 4.59 4.29 1.40 2.04 2.70 3.03 1.83 3.23 3.90 1.63 1.92 3.45 1.75 2.27 0.00 1.00 1.32 1.32 1.33 K alternative_donor eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341925_20342041;chr3L_20341636_20342041;chr3L_20341509_20342041;chr3L_20341865_20342041;chr3L_20341486_20342041;chr3L_20341522_20342041;chr3L_20341751_20342041;chr3L_20341530_20342041;chr3L_20341629_20342041;chr3L_20341598_20342041 chr3L_20341759_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA Xrp1,I_chr3R_14741648_14750799,I_chr3R_14750298_14750799 chr3R + chr3R_14749868_14750799 chr3R_14749868_14750009 chr3R_14749792_14749867;chr3R_14750800_14750899 0.00 0.00 0.00 31.37 0.00 0.00 0.00 17.11 16.13 27.78 NA 16.44 43.24 22.92 0.00 0.00 0.00 NA 21.82 25.42 30.77 17.97 21.88 0.00 0.00 0.00 17.48 22.33 0.00 25.00 0.00 0.00 0.00 0.00 0.00 0.00 31.58 0.00 0.00 24.47 40.00 22.67 0.00 23.85 0.00 17.57 0.00 0.00 20.00 23.33 24.19 22.92 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Sec61beta,I_chr2R_10506408_10506473 chr2R + chr2R_10506676_10506738 chr2R_10506675_10506676;chr2R_10506738_10506739 chr2R_10506474_10506675;chr2R_10506739_10507186 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.77 0.52 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 1.77 1.14 1.35 1.26 0.35 0.00 0.00 0.25 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 K intron_retention Rab27,sta chrX - chrX_1368544_1368707 chrX_1368543_1368544;chrX_1368707_1368708 chrX_1367939_1368543;chrX_1368708_1368827 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 9.09 5.88 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 4.35 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 K jcn_only_AD CG9669,RI_chr3L_16837963_16838041,RI_chr3L_16837988_16838041 chr3L - chr3L_16837963_16838041 chr3L_16837963_16838019 chr3L_16837888_16837962;chr3L_16838042_16838062 88.48 87.50 83.82 89.60 77.97 78.00 88.74 89.44 88.40 89.36 94.12 94.26 90.11 85.90 88.12 89.81 89.33 87.50 95.51 90.60 83.05 NA 92.86 87.93 84.00 85.00 91.14 86.54 84.00 97.22 90.00 90.36 91.67 87.00 90.48 96.30 80.39 73.91 80.77 84.80 87.21 86.62 90.00 90.79 90.00 91.07 80.36 84.47 86.61 86.67 90.20 89.06 92.00 88.57 86.90 87.21 84.09 91.07 K intron_retention CG1440 chrX + chrX_8333792_8333851 chrX_8333791_8333792;chrX_8333851_8333852 chrX_8333142_8333791;chrX_8333852_8334327 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.36 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 2.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5196,pps chr3R + chr3R_8235162_8235996 chr3R_8235161_8235162;chr3R_8235996_8235997 chr3R_8234977_8235161;chr3R_8235997_8236078 0.00 0.00 0.00 0.80 1.18 4.88 0.00 1.61 1.36 0.00 2.82 1.45 0.00 4.92 0.00 0.00 1.45 6.38 0.00 0.00 0.00 3.28 0.00 2.60 4.08 0.00 2.38 0.00 0.00 2.90 3.85 4.08 1.19 2.94 0.00 1.19 2.33 0.00 0.00 0.00 0.00 2.24 0.00 0.00 0.00 0.00 0.00 6.38 1.53 1.45 0.00 0.00 0.00 0.00 1.12 0.00 2.38 0.00 K jcn_only_AA mei-P26 chrX + chrX_9060493_9060567 chrX_9060493_9060552 chrX_9059715_9060492;chrX_9060568_9061065 10.02 NA 16.67 10.53 NA 0.00 4.35 15.22 5.26 NA NA 5.26 15.00 12.50 4.00 15.00 13.64 5.00 10.64 15.38 5.00 NA 8.33 NA NA 8.00 4.76 NA NA NA 21.74 NA 6.90 15.56 NA NA NA NA NA 12.00 NA 8.77 27.27 NA NA NA NA 9.52 12.50 NA NA NA NA NA 8.00 NA NA NA K intron_retention Ptp99A,I_chr3R_25302126_25302175 chr3R + chr3R_25307479_25307589 chr3R_25307478_25307479;chr3R_25307589_25307590 chr3R_25307192_25307478;chr3R_25307590_25307930 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Unr,DMG4-MB6.chr3L.15.021 chr3L - chr3L_8429790_8429864 chr3L_8429811_8429864 chr3L_8429865_8430072;chr3L_8429346_8429789 47.62 NA NA NA NA NA NA NA 47.62 NA NA 40.91 NA NA NA NA NA NA NA 31.82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 52.17 45.00 NA 54.17 NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG32809,RI_chrX_1585391_1586471,a6,I_chrX_1589508_1589564 chrX - chrX_1589508_1589572 chrX_1589507_1589508;chrX_1589572_1589573 chrX_1589408_1589507;chrX_1589573_1589664 0.00 0.00 0.00 0.00 NA 0.00 0.00 9.52 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA 5.13 0.00 0.00 0.00 0.00 14.81 47.06 3.23 0.00 0.00 NA 3.33 0.00 0.00 17.24 0.00 0.00 9.09 0.00 3.45 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4858,I_chr3L_20520381_20520577,EI_chr3L_20520642_20520692 chr3L + chr3L_20520381_20520692 chr3L_20520380_20520381;chr3L_20520692_20520693 chr3L_20520281_20520380;chr3L_20520693_20520792 0.00 1.32 0.00 1.41 0.00 0.00 3.17 0.00 3.28 0.00 0.00 0.84 2.04 0.00 1.52 1.20 0.00 0.00 0.00 1.35 2.00 0.00 1.94 0.00 0.00 0.00 0.85 2.04 0.00 0.00 0.00 0.00 2.97 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 1.75 0.00 2.52 1.52 1.95 0.00 1.55 1.04 2.47 2.41 0.00 0.00 0.00 0.00 0.88 0.00 2.47 K intron_retention Actn,I_chrX_1929229_1936079,I_chrX_1935678_1936079,I_chrX_1935889_1936079 chrX - chrX_1935678_1936079 chrX_1935677_1935678;chrX_1936079_1936080 chrX_1935578_1935677;chrX_1936080_1936110 56.66 NA NA NA NA NA 33.33 NA 60.00 NA NA 69.23 NA NA 46.15 66.67 NA NA NA 53.33 NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA 45.45 NA NA NA NA NA NA 66.67 NA NA NA NA NA NA 47.06 NA NA NA NA NA NA NA NA NA K jcn_only_AD slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,RI_chr2R_20289332_20289739,I_chr2R_20289332_20289846,I_chr2R_20289332_20290093 chr2R - chr2R_20289332_20290083;chr2R_20289332_20289739;chr2R_20289332_20290093 chr2R_20289332_20289846 chr2R_20289232_20289331;chr2R_20290094_20290193 4.17 NA NA 8.33 NA 4.17 4.88 7.32 13.24 NA NA 7.14 3.33 13.16 20.00 3.12 5.26 8.33 14.63 0.00 4.17 16.13 0.00 3.57 NA 8.82 0.00 4.35 NA 0.00 2.33 NA 0.00 2.00 3.45 0.00 0.00 NA NA 4.08 NA 6.25 7.41 9.52 NA 0.00 4.76 0.00 3.64 NA 2.56 6.25 4.55 NA 3.12 NA NA 3.23 K intron_retention mael chr3L + chr3L_22717501_22717583 chr3L_22717500_22717501;chr3L_22717583_22717584 chr3L_22717334_22717500;chr3L_22717584_22717785 100.00 100.00 100.00 100.00 100.00 100.00 97.67 98.00 100.00 100.00 95.00 100.00 100.00 96.77 96.88 97.44 100.00 100.00 100.00 98.46 94.74 100.00 100.00 100.00 100.00 96.15 100.00 100.00 96.00 100.00 100.00 96.43 96.97 98.21 100.00 100.00 95.24 100.00 95.65 92.50 96.00 98.04 100.00 100.00 95.65 100.00 100.00 98.04 95.74 100.00 100.00 100.00 100.00 91.67 100.00 95.83 94.12 97.92 K intron_retention CLIP-190,I_chr2L_17394493_17404060,I_chr2L_17401291_17404060,I_chr2L_17401582_17402303 chr2L + chr2L_17402486_17404060 chr2L_17402485_17402486;chr2L_17404060_17404061 chr2L_17402375_17402485;chr2L_17404061_17404076 23.61 NA NA 30.77 NA NA NA NA 33.33 NA NA 40.00 NA NA 33.33 NA NA NA NA 14.29 NA NA 20.00 11.11 NA NA 25.00 NA 20.00 66.67 NA NA 27.78 22.22 NA NA 28.57 NA 33.33 17.65 NA 28.57 NA NA 7.41 20.00 21.43 NA 26.67 NA 16.67 NA NA NA NA NA NA 14.29 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2813977;chr2R_2814097_2814174;chr2R_2814327_2816013;chr2R_2816342_2817327;chr2R_2817604_2817753 chr2R_2813978_2814096;chr2R_2814175_2814326;chr2R_2816014_2816341;chr2R_2817328_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG31716,I_chr2L_10397648_10398034 chr2L + chr2L_10399689_10399767;chr2L_10399677_10399767 chr2L_10399713_10399767 chr2L_10399768_10400679;chr2L_10399595_10399676 25.32 24.04 24.35 17.76 25.24 22.64 31.97 24.10 23.70 24.29 21.67 24.78 31.01 21.57 20.00 30.68 29.90 24.32 28.06 25.45 20.37 34.29 26.43 22.31 28.89 21.24 19.83 27.27 50.00 28.07 29.11 36.14 26.81 24.04 28.09 11.88 25.93 30.77 26.11 27.66 15.91 25.94 25.26 23.97 21.57 33.08 NA 36.31 25.23 20.00 29.79 15.19 30.88 25.37 22.48 21.05 27.47 29.70 K jcn_only_AD CG31673,RI_chr2L_20830210_20830280 chr2L + chr2L_20830794_20830860 chr2L_20830797_20830860 chr2L_20830861_20830928;chr2L_20830728_20830793 98.95 98.85 99.31 98.63 98.33 100.00 98.67 99.20 99.77 100.00 98.84 98.87 100.00 98.84 99.21 99.20 100.00 99.51 98.46 99.55 99.53 98.82 97.55 98.46 98.89 99.56 98.80 99.02 99.37 98.88 98.71 99.04 98.02 98.50 99.05 99.52 98.76 100.00 98.95 97.73 99.22 99.34 97.27 98.83 97.70 100.00 99.69 97.98 98.21 98.92 99.64 97.63 98.33 100.00 99.00 99.00 99.17 98.35 K alternative_donor dream chr2R - chr2R_1909388_1909452 chr2R_1909388_1909442 chr2R_1908976_1909387;chr2R_1909453_1910748 98.72 100.00 100.00 100.00 93.33 94.44 94.74 93.48 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 88.24 94.74 100.00 100.00 93.33 100.00 94.44 NA 88.89 94.44 87.50 87.50 100.00 100.00 83.33 93.33 100.00 100.00 NA 100.00 92.86 95.65 100.00 88.89 91.89 95.00 95.24 90.00 100.00 100.00 93.75 97.44 100.00 100.00 100.00 NA 87.50 92.00 100.00 91.67 100.00 K intron_retention CSN8,I_chr2L_8365282_8365388,I_chr2L_8367210_8367311 chr2L + chr2L_8365329_8365388 chr2L_8365328_8365329;chr2L_8365388_8365389 chr2L_8365282_8365328;chr2L_8365389_8365488 2.27 0.00 0.00 18.06 0.00 0.00 6.94 4.94 2.94 0.00 4.35 1.16 10.53 2.63 4.08 2.27 6.82 0.00 1.67 4.88 0.00 10.53 1.64 3.17 11.54 18.75 0.00 2.56 11.11 2.78 1.82 1.32 0.00 0.00 0.00 8.82 8.33 0.00 2.27 2.17 19.51 2.17 0.00 1.82 3.51 0.97 1.82 0.00 4.12 2.74 4.17 2.94 2.17 4.92 4.76 3.75 2.11 2.16 K intron_retention CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907784_9908307 chr2L_9907783_9907784;chr2L_9908307_9908308 chr2L_9907756_9907783;chr2L_9908308_9908649 81.53 NA NA 90.00 NA NA 84.62 71.43 65.00 NA NA 83.33 NA 90.00 NA 63.64 NA 77.78 72.73 90.00 NA 85.71 80.00 NA NA NA NA NA NA 88.89 88.89 NA 92.86 75.00 NA NA NA NA NA 75.00 NA 81.25 NA NA NA NA NA NA 81.82 NA 80.00 NA NA NA NA NA NA NA K cassette Mical,I_chr3R_5834577_5835458,RI_chr3R_5842549_5844218,I_chr3R_5843939_5844218,I_chr3R_5847106_5863537,I_chr3R_5863483_5863537,I_chr3R_5863613_5868513 chr3R - chr3R_5841649_5844218 chr3R_5841649_5842011;chr3R_5842549_5844218 chr3R_5842012_5842548 chr3R_5841385_5841648;chr3R_5844219_5844280 88.64 95.65 92.00 94.44 72.73 95.45 71.43 91.18 87.04 96.00 80.00 86.36 50.00 86.96 88.00 93.33 94.44 86.36 80.77 94.55 87.50 84.91 80.00 87.50 95.00 84.62 92.59 75.00 88.64 89.74 85.71 91.67 84.78 89.74 96.43 94.44 83.33 77.78 84.09 80.00 85.00 87.50 94.44 93.55 93.33 81.82 100.00 92.45 94.00 75.00 88.10 89.47 95.24 88.89 96.88 80.00 90.00 96.30 N intron_retention AnnIX,I_chr3R_16895383_16895999 chr3R + chr3R_16895383_16896445 chr3R_16895382_16895383;chr3R_16896445_16896446 chr3R_16895283_16895382;chr3R_16896446_16896495 100.00 89.53 100.00 89.55 100.00 100.00 92.90 91.67 94.49 100.00 85.88 95.48 90.53 100.00 100.00 100.00 85.19 100.00 100.00 91.28 86.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 86.57 88.54 100.00 100.00 92.96 100.00 100.00 88.06 100.00 100.00 100.00 100.00 86.34 100.00 100.00 100.00 92.31 90.70 100.00 92.74 100.00 94.06 84.75 100.00 91.82 88.75 89.92 89.55 100.00 K intron_retention par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,I_chr2R_15355073_15356294,RI_chr2R_15355419_15356294,I_chr2R_15359251_15360944,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15353200_15358101 chr2R_15353199_15353200;chr2R_15358101_15358102 chr2R_15353143_15353199;chr2R_15358102_15358317 0.00 3.85 0.00 0.00 0.00 0.00 0.00 4.17 1.85 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 NA 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG18815 chr3L + chr3L_11621227_11621442 chr3L_11621237_11621442 chr3L_11621443_11621601;chr3L_11621168_11621226 98.04 98.55 98.36 97.39 98.00 97.73 97.22 98.94 98.00 97.14 98.57 99.33 97.01 98.04 93.98 98.86 96.83 98.57 100.00 98.21 98.61 92.98 96.00 98.78 98.15 96.77 98.51 100.00 98.04 98.04 95.38 100.00 97.92 96.12 97.37 97.96 99.00 98.51 98.84 98.82 96.97 97.79 98.11 100.00 95.52 97.53 96.34 97.44 96.90 98.28 98.81 98.48 95.95 98.08 100.00 98.55 98.82 97.96 K intron_retention Smc5,I_chr3L_21566234_21566275 chr3L + chr3L_21566234_21566289 chr3L_21566233_21566234;chr3L_21566289_21566290 chr3L_21566134_21566233;chr3L_21566290_21566375 9.76 3.92 5.77 9.46 7.89 10.53 21.57 9.46 9.78 15.79 13.16 11.54 2.78 0.00 6.98 5.08 8.11 8.00 5.45 10.20 13.33 7.41 11.54 6.78 31.82 19.51 8.96 9.68 19.51 16.13 12.28 6.90 11.63 6.35 18.18 29.73 7.04 11.54 4.11 11.67 34.38 9.76 15.62 0.00 16.67 4.00 7.14 11.76 10.71 9.52 8.24 13.64 6.82 5.71 10.64 11.67 9.78 4.88 N intron_retention spin,I_chr2R_12013288_12013847 chr2R + chr2R_12019405_12023531 chr2R_12019404_12019405;chr2R_12023531_12023532 chr2R_12019047_12019404;chr2R_12023532_12023630 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 48.15 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA K jcn_only_AA lilli chr2L + chr2L_2886579_2946708 chr2L_2886579_2889673 chr2L_2885970_2886578 94.44 NA NA 95.65 NA NA 90.91 100.00 90.38 NA NA 96.30 91.30 NA NA 95.12 NA NA 95.83 88.46 NA NA NA NA NA NA NA NA NA NA NA NA 91.67 94.44 NA NA NA NA NA NA NA 96.67 NA NA NA NA NA NA 90.32 NA NA NA NA NA NA NA NA NA K jcn_only_AD pigeon chr2L + chr2L_19187018_19187078 chr2L_19187021_19187078 chr2L_19187079_19188242;chr2L_19186980_19187017 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA 100.00 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA 100.00 NA 100.00 NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA K alternative_donor vlc chr2R + chr2R_1589953_1590371;chr2R_1589894_1590371;chr2R_1589799_1590371;chr2R_1589805_1590371;chr2R_1590318_1590371;chr2R_1590294_1590371;chr2R_1589722_1590371;chr2R_1589693_1590371 chr2R_1589807_1590371 chr2R_1590372_1590451;chr2R_1589612_1589692 0.00 0.00 2.56 1.52 0.00 0.00 0.00 0.00 1.27 0.00 0.00 1.33 0.00 2.33 0.00 0.00 0.00 2.50 2.08 1.47 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Trf2,I_chrX_8318346_8318408 chrX + chrX_8304723_8312383 chrX_8304722_8304723;chrX_8312383_8312384 chrX_8304315_8304722;chrX_8312384_8312459 16.67 NA NA 36.36 NA NA 7.69 19.05 16.67 NA NA NA NA NA NA 22.22 NA NA NA 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA 22.22 NA NA NA NA NA 16.67 NA NA NA 0.00 NA NA NA 14.81 NA NA NA NA NA NA NA NA NA 10.53 N cassette I_chr2R_5999081_6000140,E_chr2R_6001157_6001630,CG11866 chr2R + chr2R_6005374_6006983 chr2R_6005374_6005536;chr2R_6006048_6006983 chr2R_6005537_6006047 chr2R_6005198_6005373;chr2R_6006984_6007232 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.35 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Ras85D,I_chr3R_5338175_5338299 chr3R - chr3R_5337404_5337461 chr3R_5337403_5337404;chr3R_5337461_5337462 chr3R_5337326_5337403;chr3R_5337462_5337529 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.78 0.00 0.53 0.00 0.00 0.00 0.27 0.00 0.68 0.00 0.52 0.40 0.00 1.02 3.07 1.23 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.68 0.00 0.44 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 0.24 K jcn_only_AD Cip4,I_chr3L_4325411_4326640,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4325411_4326983 chr3L_4325411_4326208 chr3L_4325311_4325410 0.00 0.00 0.76 2.73 0.00 0.00 0.28 0.00 0.52 0.00 0.00 1.03 0.00 0.00 0.00 0.38 0.00 0.00 0.50 0.64 0.00 0.00 0.47 0.00 0.00 0.00 0.00 1.32 0.00 0.60 0.00 0.00 0.00 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.44 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG13902,I_chr3L_840962_841041 chr3L - chr3L_840970_841041;chr3L_840991_841041 chr3L_840962_841041 chr3L_841042_841141;chr3L_840862_840961 2.92 0.00 9.38 0.00 NA 9.52 2.94 1.39 2.56 0.00 0.00 0.00 3.23 0.00 2.56 4.88 0.00 7.89 0.00 3.23 8.33 13.64 2.94 0.00 4.76 2.78 0.00 0.00 6.25 2.04 8.33 6.25 1.82 3.85 0.00 2.33 9.76 12.00 2.70 3.03 0.00 1.27 3.33 2.33 6.52 2.90 4.76 2.82 6.25 0.00 6.98 3.45 4.55 14.29 4.08 0.00 3.45 1.41 K jcn_only_AD Tao-1,I_chrX_19471628_19472934 chrX - chrX_19471628_19473780 chrX_19471628_19473430 chrX_19471528_19471627;chrX_19473781_19473835 98.18 94.79 96.92 95.91 100.00 95.80 92.24 92.99 94.90 98.94 100.00 100.00 96.88 98.86 95.97 93.90 98.46 95.77 95.45 92.96 98.95 94.83 100.00 98.85 100.00 96.23 100.00 100.00 98.50 100.00 95.59 94.52 98.56 96.74 99.28 99.21 97.78 98.77 100.00 99.38 100.00 95.83 97.83 98.92 97.17 96.97 98.28 98.12 95.67 97.96 98.53 98.28 100.00 98.18 97.35 100.00 100.00 98.11 K alternative_acceptor blp,EI_chr3R_11759655_11759701,Sap47 chr3R + chr3R_11759655_11759724 chr3R_11759655_11759721 chr3R_11759632_11759654;chr3R_11759725_11759801 84.62 92.86 94.12 85.19 76.92 84.21 82.86 97.22 81.63 90.91 84.62 83.72 92.86 82.35 90.48 82.69 82.35 80.95 91.67 87.04 80.00 76.00 85.71 85.00 84.62 81.82 94.74 87.50 94.74 81.82 82.14 80.00 80.65 82.50 71.43 78.95 78.95 61.54 87.50 90.32 93.33 91.49 93.75 78.95 90.48 83.72 71.43 89.66 88.10 92.31 87.50 85.00 89.47 82.61 78.57 82.14 85.71 78.12 K intron_retention Fkbp13 chr2R - chr2R_17375712_17375777 chr2R_17375711_17375712;chr2R_17375777_17375778 chr2R_17375524_17375711;chr2R_17375778_17375866 0.00 0.00 0.00 0.59 0.00 0.47 0.00 0.00 0.24 1.07 0.00 0.56 0.00 0.00 0.00 0.27 0.00 0.00 0.53 0.27 0.00 0.41 0.00 0.00 0.00 0.00 0.98 0.87 1.25 0.84 0.00 0.40 0.51 0.00 0.00 0.88 0.00 0.56 0.46 0.21 0.73 0.23 0.00 0.33 0.00 0.52 0.19 0.63 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.37 0.21 N jcn_only_AA CG13602,I_chr3R_19753657_19753715 chr3R - chr3R_19754473_19754558 chr3R_19754502_19754558 chr3R_19754559_19754569;chr3R_19754464_19754472 80.95 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.95 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG3408,I_chr3L_9501587_9501663,RI_chr3L_9501725_9502450,I_chr3L_9504402_9504516 chr3L - chr3L_9501587_9501664 chr3L_9501586_9501587;chr3L_9501664_9501665 chr3L_9501487_9501586;chr3L_9501665_9501724 4.35 NA NA 7.14 NA NA 0.00 0.00 4.35 NA NA 8.33 NA NA 0.00 NA NA NA NA 10.53 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 12.50 NA 0.00 NA 0.00 NA 0.00 NA 10.00 4.76 NA 17.65 NA NA NA NA NA NA 15.38 K alternative_acceptor CG5482,I_chr2R_14519136_14519239 chr2R - chr2R_14519136_14519254 chr2R_14519141_14519254 chr2R_14519255_14519262;chr2R_14519036_14519135 1.67 3.70 0.00 5.00 0.00 0.00 4.65 3.23 1.85 NA 4.55 7.27 4.76 0.00 2.78 2.90 4.76 0.00 3.23 2.53 0.00 4.55 2.22 4.76 0.00 0.00 2.78 NA 0.00 0.00 2.33 0.00 NA 0.00 0.00 6.67 6.67 0.00 0.00 2.70 NA 1.67 0.00 0.00 0.00 2.63 0.00 0.00 1.59 0.00 2.56 0.00 4.17 0.00 4.08 0.00 5.88 0.00 K alternative_donor rdgB,noncoding_23582 chrX + chrX_13668012_13670708 chrX_13670414_13670708 chrX_13670709_13670773;chrX_13667839_13668011 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 88.89 100.00 100.00 100.00 K multi_cassette CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2436229_2459590 chr3L_2436229_2439498;chr3L_2439831_2443389;chr3L_2443839_2443987;chr3L_2444088_2444498;chr3L_2446102_2459590 chr3L_2439499_2439830;chr3L_2443390_2443838;chr3L_2443988_2444087;chr3L_2444499_2446101 chr3L_2436209_2436228;chr3L_2459591_2459690 100.00 100.00 83.33 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 90.00 80.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 87.50 100.00 100.00 95.24 100.00 90.00 100.00 100.00 100.00 100.00 87.50 88.89 91.67 88.89 92.31 92.31 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 90.91 100.00 100.00 100.00 100.00 85.71 100.00 100.00 K multi_cassette trx chr3R - chr3R_10101091_10111930 chr3R_10101091_10102027;chr3R_10103265_10104814;chr3R_10105264_10111930 chr3R_10102028_10103264;chr3R_10104815_10105263 chr3R_10099914_10101090;chr3R_10111931_10112601 100.00 100.00 100.00 96.67 100.00 100.00 92.59 100.00 97.67 100.00 91.67 97.22 100.00 100.00 100.00 96.43 100.00 92.31 94.12 100.00 90.00 95.83 96.77 93.75 93.33 100.00 100.00 88.24 100.00 90.00 100.00 100.00 95.24 100.00 100.00 95.00 95.83 100.00 100.00 100.00 100.00 100.00 93.75 94.74 100.00 100.00 100.00 94.74 96.88 100.00 95.24 90.00 100.00 NA 95.00 100.00 100.00 100.00 K intron_retention eIF-4a,I_chr2L_5981836_5984010,I_chr2L_5983941_5984010,I_chr2L_5983591_5984010,I_chr2L_5985221_5985289 chr2L + chr2L_5983237_5984010 chr2L_5983236_5983237;chr2L_5984010_5984011 chr2L_5983010_5983236;chr2L_5984011_5984110 0.03 0.05 0.06 0.04 0.02 0.00 0.03 0.02 0.01 0.10 0.00 0.00 0.04 0.00 0.05 0.00 0.00 0.00 0.07 0.01 0.00 0.15 0.05 0.05 0.00 0.03 0.08 0.44 0.27 0.12 0.08 0.00 0.16 0.04 0.00 0.00 0.02 0.04 0.07 0.08 0.09 0.03 0.00 0.00 0.14 0.00 0.06 0.00 0.05 0.11 0.06 0.00 0.09 0.00 0.00 0.00 0.00 0.00 K intron_retention elm chr3R - chr3R_1478257_1478926 chr3R_1478256_1478257;chr3R_1478926_1478927 chr3R_1478103_1478256;chr3R_1478927_1479476 98.80 99.09 100.00 100.00 100.00 99.14 99.48 98.48 99.32 98.63 96.67 99.07 100.00 100.00 98.63 96.71 99.04 96.55 99.33 98.54 97.27 98.68 98.06 99.05 98.73 99.18 99.01 98.78 97.56 98.59 97.14 96.10 98.01 98.56 100.00 100.00 97.42 93.94 98.00 99.22 99.07 99.27 98.33 96.23 97.00 96.90 99.24 98.80 98.78 98.84 100.00 98.80 97.06 97.10 99.38 99.14 99.43 99.33 K jcn_only_AA CG1637,I_chrX_10767807_10771447 chrX - chrX_10766073_10771447;chrX_10767742_10771447;chrX_10770033_10771447 chrX_10770030_10771447 chrX_10771448_10771547 13.12 9.02 11.35 0.51 13.28 10.32 7.14 7.04 13.12 32.88 20.35 12.98 3.91 14.09 13.66 10.71 13.68 17.80 6.88 12.43 26.96 15.86 12.50 14.63 9.45 4.27 11.06 10.69 14.63 9.77 13.18 22.22 14.78 9.25 11.89 18.40 19.87 14.08 19.50 28.99 18.87 8.36 14.15 13.71 15.94 18.75 8.76 27.27 13.60 8.67 8.41 10.71 11.43 16.18 8.04 12.28 7.85 16.50 K intron_retention Atx-1,Atx-1_CG4542 chrX + chrX_6717389_6717445 chrX_6717388_6717389;chrX_6717445_6717446 chrX_6717249_6717388;chrX_6717446_6717671 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Osi19 chr3R + chr3R_2161894_2162001 chr3R_2161893_2161894;chr3R_2162001_2162002 chr3R_2161644_2161893;chr3R_2162002_2162010 36.61 NA NA 69.23 NA NA NA 30.77 33.33 NA NA 37.50 NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA 46.67 NA NA 14.29 NA NA NA NA 50.00 NA NA NA NA 35.71 NA NA NA K alternative_acceptor I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_927771_929704,CG32021,RI_chr4_928193_928245,I_chr4_928482_929704,noncoding_20815,I_chr4_929811_932812 chr4 - chr4_927771_929704;chr4_928551_929704 chr4_928482_929704 chr4_929705_929804;chr4_927741_927770 25.30 35.19 14.63 49.02 24.24 21.21 21.30 9.62 16.16 17.91 67.50 21.84 31.03 33.33 40.00 46.81 31.03 13.89 50.00 43.12 24.24 23.50 47.32 26.37 21.52 14.71 17.74 34.48 35.45 22.62 29.76 NA 21.95 18.18 15.25 27.17 40.00 21.62 21.95 14.39 39.29 27.06 12.90 35.17 42.86 11.65 40.28 28.80 32.88 20.91 20.62 10.71 35.56 21.05 16.28 42.42 40.00 50.77 K jcn_only_AD CG31777,RI_chr2L_3706792_3706842,cutlet chr2L - chr2L_3706792_3706921 chr2L_3706792_3706842 chr2L_3706692_3706791;chr2L_3706922_3706942 2.23 0.74 2.82 1.08 4.11 2.86 2.41 3.72 4.51 5.63 3.76 2.50 7.23 4.05 4.55 6.31 2.06 5.03 4.26 0.80 6.12 0.00 2.68 3.20 0.63 1.23 1.49 0.00 0.00 1.82 1.42 0.66 0.91 5.23 3.31 0.00 1.89 1.11 1.05 1.37 1.22 3.65 4.21 2.23 1.51 1.86 1.51 1.09 1.84 2.52 2.53 2.78 0.87 0.76 3.39 2.00 5.02 4.29 K jcn_only_AD Cdk4,RI_chr2R_12471503_12471656 chr2R + chr2R_12467202_12468346;chr2R_12467432_12468346;chr2R_12467241_12468346;chr2R_12467474_12468346;chr2R_12467225_12468346;chr2R_12467227_12468346;chr2R_12467261_12468346;chr2R_12467039_12468346 chr2R_12467275_12468346 chr2R_12468347_12468520;chr2R_12467030_12467038 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 3.33 1.67 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 3.33 NA NA 0.00 3.45 0.00 0.00 NA NA 0.00 0.00 0.00 3.23 K intron_retention CG7028,I_chr3L_207277_208117 chr3L - chr3L_210400_210475 chr3L_210399_210400;chr3L_210475_210476 chr3L_209784_210399;chr3L_210476_210738 72.22 77.50 80.00 92.00 76.67 87.50 82.86 82.35 77.27 68.42 77.78 79.25 85.19 82.14 82.50 93.10 69.57 86.96 82.14 75.58 89.47 67.57 67.80 72.22 46.15 70.00 83.33 87.50 60.78 66.67 43.10 55.56 77.78 75.68 74.07 41.86 70.15 67.57 56.36 68.25 59.09 68.75 84.62 70.59 45.00 69.70 66.67 64.29 72.55 78.12 68.00 84.62 58.62 66.67 78.12 65.22 70.83 70.73 K intron_retention Mtl,I_chr3R_23462559_23463794 chr3R + chr3R_23464028_23464100 chr3R_23464027_23464028;chr3R_23464100_23464101 chr3R_23463795_23464027;chr3R_23464101_23464261 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor pho,I_chr4_1193830_1201673,RI_chr4_1201895_1202215 chr4 - chr4_1201908_1202215 chr4_1201908_1201993 chr4_1201674_1201907;chr4_1202216_1202221 100.00 100.00 100.00 100.00 NA 100.00 94.74 100.00 95.65 NA NA 90.00 100.00 100.00 NA 100.00 NA NA 100.00 87.50 NA NA 100.00 100.00 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 92.86 100.00 100.00 100.00 NA NA NA NA NA 100.00 K intron_retention CG2765,RI_chr2R_20849027_20852094,I_chr2R_20849271_20849626,I_chr2R_20849271_20850005,E_chr2R_20849271_20850693,E_chr2R_20849271_20851166,E_chr2R_20849271_20852090,E_chr2R_20851190_20852094 chr2R - chr2R_20849271_20850005 chr2R_20849270_20849271;chr2R_20850005_20850006 chr2R_20849171_20849270;chr2R_20850006_20850105 92.31 88.89 NA 88.89 NA NA 88.89 NA 92.31 NA NA 93.33 NA NA 100.00 100.00 NA NA NA 92.31 77.78 93.33 94.44 91.67 100.00 100.00 100.00 90.91 NA NA 100.00 NA 100.00 88.89 NA 80.00 80.00 NA 90.00 94.44 NA 100.00 NA 91.67 NA NA NA NA 90.00 87.50 93.33 NA NA NA NA NA NA NA K jcn_only_AD RpL10Ab,snoRNA:Psi18S-920 chr3L + chr3L_11815991_11816299 chr3L_11816042_11816299 chr3L_11816300_11816370;chr3L_11815955_11815990 0.04 0.00 0.00 0.00 0.10 0.00 0.36 0.10 0.00 0.13 0.00 0.19 0.00 0.00 0.00 0.09 0.00 0.11 0.00 0.14 0.00 0.20 0.00 0.97 1.05 0.09 NA 0.08 0.11 0.00 0.33 0.04 0.06 0.04 0.00 0.20 0.00 0.00 0.00 0.00 0.04 0.05 0.00 0.00 0.06 0.00 2.13 0.00 0.19 2.56 2.33 0.00 0.00 NA 0.00 0.00 0.87 0.08 K intron_retention CG30390,CG9752 chr2R - chr2R_17182872_17182964 chr2R_17182871_17182872;chr2R_17182964_17182965 chr2R_17182772_17182871;chr2R_17182965_17183092 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.44 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 98.46 K alternative_donor CG4272 chr2L + chr2L_2365902_2366274;chr2L_2365391_2366274 chr2L_2365729_2366274 chr2L_2366275_2368213;chr2L_2365332_2365390 77.78 72.22 93.33 81.25 78.57 78.57 68.97 81.08 80.85 84.62 75.00 75.00 73.91 90.48 88.89 75.00 73.33 77.78 73.91 88.57 60.00 50.00 77.78 75.00 91.67 68.75 75.00 82.35 64.29 83.33 76.19 83.33 78.26 75.86 88.24 68.42 76.47 80.00 88.24 77.42 54.55 79.49 83.33 84.21 85.71 71.43 83.33 73.33 72.73 78.57 76.92 87.50 77.78 85.71 69.57 78.57 81.82 73.68 K multi_cassette sdk,I_chrX_625220_634459,I_chrX_636395_636562 chrX + chrX_625220_634459 chrX_625220_631201;chrX_631322_631542;chrX_631699_634459 chrX_631202_631321;chrX_631543_631698 chrX_625214_625219;chrX_634460_634559 83.33 80.00 83.33 60.00 NA 75.00 NA 100.00 88.89 75.00 NA 83.33 75.00 75.00 100.00 75.00 100.00 NA 75.00 85.71 100.00 57.14 87.50 80.00 NA NA 75.00 75.00 80.00 90.00 100.00 NA 83.33 75.00 75.00 NA 75.00 80.00 100.00 100.00 NA 83.33 NA 83.33 NA NA NA 85.71 83.33 NA 83.33 NA NA NA 75.00 NA NA NA K cassette toc chr2L - chr2L_3094376_3108724 chr2L_3094376_3097921;chr2L_3098066_3108724 chr2L_3097922_3098065 chr2L_3094217_3094375;chr2L_3108725_3108828 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 NA 100.00 100.00 87.50 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention l(1)dd4 chrX - chrX_13637768_13638316 chrX_13637767_13637768;chrX_13638316_13638317 chrX_13636349_13637767;chrX_13638317_13638763 0.00 5.00 0.00 0.00 NA NA 7.41 0.00 0.00 NA 0.00 2.56 0.00 0.00 0.00 3.23 0.00 0.00 NA 1.92 NA 0.00 0.00 0.00 NA 0.00 NA NA NA NA 10.00 NA 0.00 0.00 NA NA 0.00 NA 5.88 0.00 NA 5.88 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA K intron_retention CG15747 chrX + chrX_13234461_13234550 chrX_13234460_13234461;chrX_13234550_13234551 chrX_13234198_13234460;chrX_13234551_13235028 90.00 NA NA 95.45 NA NA 100.00 85.71 100.00 NA NA 100.00 NA NA 88.89 82.35 NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA 87.50 NA NA 100.00 NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA 88.89 NA N alternative_donor blow,RI_chr2R_3470434_3470776 chr2R - chr2R_3472863_3474487 chr2R_3472863_3474436 chr2R_3472561_3472862;chr2R_3474488_3474581 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 78.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Pp2A-29B,I_chr2L_8366082_8366148,I_chr2L_8367210_8367311,I_chr2L_8369561_8369715 chr2L + chr2L_8366082_8366148 chr2L_8366082_8366137 chr2L_8366075_8366081;chr2L_8366149_8366248 98.89 100.00 98.72 100.00 100.00 98.21 97.58 99.26 99.04 100.00 100.00 97.90 98.88 98.89 100.00 100.00 98.73 98.31 99.00 98.34 98.57 98.31 100.00 100.00 98.39 100.00 100.00 96.55 100.00 100.00 98.18 100.00 98.85 100.00 98.18 98.55 98.46 100.00 100.00 95.00 98.18 97.90 98.48 98.75 100.00 98.72 98.55 97.59 99.38 98.61 100.00 100.00 100.00 100.00 99.07 100.00 98.65 98.68 K intron_retention Mob2,RI_chr3L_11520443_11527440,CE_chr3L_11520917_11527526,RE_chr3L_11520925_11527489,RI_chr3L_11535932_11545929 chr3L - chr3L_11520443_11520554 chr3L_11520442_11520443;chr3L_11520554_11520555 chr3L_11520343_11520442;chr3L_11520555_11520906 1.61 2.82 0.00 2.70 0.00 0.00 4.17 2.02 1.97 0.00 0.00 2.27 5.66 0.00 0.00 2.44 3.23 0.00 0.00 1.68 0.00 2.15 0.00 1.35 3.03 0.00 2.13 4.00 0.00 0.00 0.00 4.44 5.66 2.75 0.00 0.00 0.00 2.56 0.00 2.41 0.00 1.69 2.00 0.00 0.00 3.75 3.03 4.17 1.61 3.03 2.82 1.92 0.00 0.00 4.76 0.00 0.00 0.00 K intron_retention Rm62,RI_chr3R_1834029_1834277 chr3R - chr3R_1834029_1834272 chr3R_1834028_1834029;chr3R_1834272_1834273 chr3R_1833929_1834028;chr3R_1834273_1834276 44.45 62.50 NA 43.90 47.62 53.33 77.36 42.86 50.00 21.15 47.06 68.00 NA 58.33 36.36 28.12 53.33 46.67 52.38 56.25 52.94 NA 66.67 68.00 75.00 74.36 68.97 14.29 41.77 23.91 42.31 15.38 13.76 27.03 38.10 45.00 68.97 59.09 63.64 4.74 40.82 34.09 40.91 11.69 12.50 23.40 66.67 12.93 35.00 33.33 68.75 36.84 17.91 78.57 42.86 47.62 50.00 12.68 K intron_retention kal-1 chr3R + chr3R_19972025_19972087 chr3R_19972024_19972025;chr3R_19972087_19972088 chr3R_19971831_19972024;chr3R_19972088_19972461 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.29 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Ect4,I_chr3L_8075556_8086158,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8092637_8095992 chr3L_8095662_8095992 chr3L_8095993_8097918 1.05 1.43 5.58 6.91 0.00 0.00 3.68 2.69 0.00 1.25 0.97 0.72 0.00 1.61 0.53 1.27 2.22 2.16 1.84 0.89 0.88 6.41 1.45 1.40 0.00 1.34 1.17 3.37 0.37 0.34 0.00 0.00 0.90 0.90 1.49 2.74 1.05 0.60 2.87 1.17 2.75 2.35 0.95 0.68 1.71 0.86 1.45 0.51 0.70 3.95 0.95 0.00 0.00 2.47 2.47 0.00 0.00 0.00 K intron_retention CG5445,I_chrX_17198393_17198730 chrX + chrX_17198404_17198730 chrX_17198403_17198404;chrX_17198730_17198731 chrX_17198108_17198403;chrX_17198731_17198830 0.00 2.08 0.00 0.00 2.70 0.00 5.26 0.00 0.00 0.00 0.00 3.08 10.53 0.00 0.00 0.00 0.00 2.86 0.00 1.33 0.00 7.69 0.00 0.00 2.70 0.00 4.48 1.64 5.77 2.13 0.00 0.00 0.00 0.00 0.00 0.00 1.19 3.57 0.84 4.44 0.00 2.56 NA 0.00 0.00 0.00 0.00 4.76 2.17 2.86 0.00 0.00 2.00 0.00 0.00 2.13 3.12 7.14 K jcn_only_AA CG10737 chr2R + chr2R_15062754_15063752;chr2R_15062754_15063770 chr2R_15062754_15063692 chr2R_15062592_15062753;chr2R_15063771_15063852 94.25 92.31 91.23 89.13 92.68 100.00 86.36 96.61 91.53 97.50 96.36 93.90 97.22 96.15 97.06 84.00 97.73 94.55 97.78 91.30 86.11 84.95 95.69 97.22 97.83 95.83 96.59 91.43 98.36 93.55 95.92 98.25 61.29 86.67 91.11 98.00 94.25 91.86 95.37 93.10 100.00 91.49 86.21 97.89 84.13 98.95 97.53 91.30 91.51 95.45 94.85 92.00 92.65 93.94 96.36 89.47 95.24 92.74 K intron_retention I_chrX_1757755_1757801,Pgam5,I_chrX_1793073_1794406,RI_chrX_1795648_1795745 chrX - chrX_1766940_1767005 chrX_1766939_1766940;chrX_1767005_1767006 chrX_1766389_1766939;chrX_1767006_1767583 3.45 0.00 3.57 31.25 3.45 0.00 0.00 7.14 1.39 8.33 7.41 4.48 0.00 0.00 7.02 3.12 0.00 6.25 3.45 7.41 0.00 3.92 5.41 1.98 2.00 2.86 27.27 30.56 7.32 3.57 5.26 2.13 0.00 1.92 5.88 15.22 6.35 1.49 1.08 3.45 6.32 3.90 0.00 0.00 0.00 4.60 1.39 0.00 2.90 3.23 6.15 0.00 0.00 3.57 2.50 3.80 0.98 3.51 K intron_retention lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6394546_6419543,I_chr2R_6404486_6419543,R_chr2R_6408775_6419537,I_chr2R_6409616_6419543,I_chr2R_6413368_6414281,I_chr2R_6419625_6419686,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6406881_6419543 chr2R_6406880_6406881;chr2R_6419543_6419544 chr2R_6406818_6406880;chr2R_6419544_6419624 22.73 24.14 26.32 23.29 30.77 29.73 26.09 19.42 27.66 20.00 34.48 17.24 23.26 42.86 20.37 44.26 14.63 16.07 23.26 15.56 16.67 6.76 32.69 22.73 21.62 44.44 41.94 38.24 11.11 7.94 24.44 9.33 10.16 27.14 28.57 21.43 32.08 23.68 24.07 17.76 6.35 22.22 23.08 24.49 6.19 7.23 14.29 9.74 23.71 10.81 24.07 37.04 17.24 13.89 19.57 24.24 16.67 9.09 K cassette Atpalpha,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16783890_16789446;chr3R_16785103_16789446 chr3R_16783890_16786447,chr3R_16785103_16786447;chr3R_16786564_16789446 chr3R_16786448_16786563 chr3R_16783790_16783889;chr3R_16789447_16789578 2.63 1.59 1.64 0.83 1.39 2.27 0.66 2.04 1.95 4.17 16.46 4.35 2.04 3.80 1.52 1.75 0.98 3.64 1.25 5.88 4.29 1.45 2.70 2.44 2.56 1.75 1.82 6.25 21.05 5.00 5.00 0.00 4.44 1.84 3.17 0.00 5.00 3.03 2.63 4.23 7.14 0.62 1.64 1.47 6.67 5.00 5.26 2.78 1.30 2.00 2.70 5.26 8.00 2.86 1.15 0.00 10.71 5.26 K intron_retention Mbs,I_chr3L_16045251_16046108,I_chr3L_16057100_16057329 chr3L + chr3L_16059930_16063219 chr3L_16059929_16059930;chr3L_16063219_16063220 chr3L_16059713_16059929;chr3L_16063220_16063364 8.57 14.58 8.57 25.45 11.76 8.33 13.98 6.98 11.40 0.00 9.23 12.62 8.96 13.16 11.76 12.68 17.50 2.13 23.08 8.04 8.62 2.86 11.39 6.78 15.79 4.00 6.25 4.82 6.10 11.43 16.67 4.35 5.88 11.36 7.84 9.09 11.34 4.65 7.53 6.59 8.16 7.69 12.50 15.15 0.00 10.00 3.57 6.35 10.99 6.12 8.96 6.25 5.71 0.00 15.69 10.87 0.00 1.52 K jcn_only_AD Cip4,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4324448_4324921 chr3L_4324448_4324861 chr3L_4324284_4324447;chr3L_4324922_4324996 31.07 28.46 27.10 21.21 41.38 24.11 36.14 26.36 32.28 67.65 38.10 23.23 50.62 30.43 33.33 28.19 37.27 64.80 31.07 29.50 32.47 33.33 29.71 32.11 24.41 29.59 43.86 52.38 50.00 45.13 34.65 42.17 34.97 24.29 26.92 32.24 27.01 26.61 18.24 20.24 41.59 31.28 37.86 30.48 46.72 45.22 30.95 51.09 29.28 31.25 30.20 22.67 29.35 30.14 28.97 26.21 30.56 63.46 K jcn_only_AA mod(r),RI_chrX_515831_515923,I_chrX_516392_517480 chrX + chrX_516392_516478 chrX_516392_516466 chrX_516292_516391;chrX_516479_517065 52.38 75.00 52.38 NA NA 70.83 58.62 47.22 47.22 NA 60.87 60.00 69.23 48.15 50.00 54.76 NA 45.45 58.33 52.00 47.83 56.25 58.62 58.33 NA NA 56.52 NA 41.46 43.48 64.71 56.00 42.86 52.38 NA NA 52.63 NA NA 54.29 44.83 55.17 47.62 60.71 50.00 47.89 41.38 61.76 52.83 42.42 52.00 NA 36.00 NA 51.16 45.16 55.32 50.00 K intron_retention RpL13A,I_chr3R_1450243_1451235,EI_chr3R_1450853_1451054,snoRNA:Me28S-U2134b,snoRNA:Me28S-U2134a chr3R + chr3R_1450853_1451235 chr3R_1450852_1450853;chr3R_1451235_1451236 chr3R_1450753_1450852;chr3R_1451236_1451335 0.06 0.06 0.04 0.07 0.03 0.06 0.23 0.05 0.05 0.05 0.06 0.06 0.08 0.07 0.03 0.08 0.03 0.04 0.05 0.05 0.07 0.12 0.11 0.08 0.23 0.12 0.08 0.44 0.09 0.03 0.07 0.03 0.04 0.06 0.05 0.14 0.05 0.08 0.05 0.07 0.14 0.03 0.05 0.06 0.02 0.05 0.06 0.05 0.07 0.07 0.12 0.07 0.10 0.04 0.03 0.07 0.08 0.03 K intron_retention CG7267,I_chrX_8971691_8972369 chrX - chrX_8965835_8965904 chrX_8965834_8965835;chrX_8965904_8965905 chrX_8965184_8965834;chrX_8965905_8966022 0.00 0.00 0.00 0.22 0.00 0.00 0.24 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.20 0.23 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD hook,CG31800 chr2L - chr2L_19031242_19031326 chr2L_19031242_19031292 chr2L_19031164_19031241;chr2L_19031327_19031361 99.44 100.00 100.00 100.00 100.00 100.00 98.58 99.24 100.00 100.00 99.06 99.37 100.00 100.00 100.00 100.00 98.59 98.78 98.15 98.56 100.00 100.00 98.02 98.91 96.15 98.92 99.19 100.00 100.00 100.00 99.05 98.48 99.10 100.00 100.00 100.00 98.00 100.00 98.59 98.57 97.20 99.44 98.75 100.00 99.11 100.00 100.00 98.51 100.00 100.00 99.03 98.39 98.39 100.00 97.32 98.45 100.00 100.00 K intron_retention alpha-Man-I,I_chrX_10218352_10219759,I_chrX_10218390_10219759 chrX - chrX_10218352_10219823 chrX_10218351_10218352;chrX_10219823_10219824 chrX_10218290_10218351;chrX_10219824_10219859 83.33 NA NA 83.33 NA NA 87.50 83.33 64.71 NA NA 80.00 NA NA 87.50 91.67 NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA 73.33 NA NA NA NA NA NA NA NA NA K jcn_only_AD C1GalTA,I_chr2L_8945896_8950977 chr2L - chr2L_8945535_8950977 chr2L_8945535_8950769 chr2L_8945358_8945534;chr2L_8950978_8951077 6.25 9.26 13.04 2.38 18.52 6.78 10.78 3.29 8.18 8.00 5.26 1.83 5.15 5.81 5.06 9.26 12.86 4.92 4.49 4.67 15.91 3.17 6.52 8.33 5.71 5.05 6.25 0.00 NA 10.42 7.04 10.00 0.00 3.97 6.25 16.67 9.09 3.45 10.00 5.41 11.48 7.20 6.45 3.33 13.04 5.88 9.76 9.62 8.00 5.36 5.17 0.00 11.63 6.67 3.00 2.33 2.82 4.00 K alternative_acceptor Idh,I_chr3L_8351006_8351949,I_chr3L_8351036_8351655 chr3L - chr3L_8351006_8353892 chr3L_8351036_8353892 chr3L_8353893_8353937;chr3L_8350936_8351005 3.12 5.00 2.63 8.70 0.00 4.76 6.67 4.48 5.38 11.11 0.00 5.88 4.35 4.65 2.56 1.49 0.00 0.00 0.00 4.00 0.00 9.62 3.64 3.16 4.08 7.69 3.70 6.38 3.77 0.00 2.70 2.04 3.95 1.89 3.77 7.55 0.00 0.00 1.96 4.10 2.00 3.85 0.00 0.70 2.22 4.20 0.00 0.00 2.70 1.41 2.17 1.04 3.57 3.92 3.12 3.33 0.88 1.64 K jcn_only_AD CG15134 chr2L + chr2L_16904713_16905298;chr2L_16904611_16905298 chr2L_16904662_16905298 chr2L_16905299_16905389;chr2L_16904460_16904610 9.76 7.69 7.50 13.70 15.62 13.73 3.28 9.09 3.80 34.62 13.33 13.89 2.56 5.56 1.92 4.92 11.63 10.26 1.41 5.05 8.33 15.25 12.31 2.50 15.56 4.76 14.71 8.00 10.81 10.00 4.84 NA 39.53 8.05 12.90 10.00 0.00 8.70 8.11 1.43 NA 5.19 8.11 18.75 NA 10.00 NA 14.71 9.52 NA 11.43 10.34 NA NA 16.98 NA NA 25.00 K jcn_only_AA CG5630 chr3R + chr3R_16752700_16754401 chr3R_16752700_16752909 chr3R_16752493_16752699;chr3R_16754402_16754407 98.98 100.00 100.00 60.27 98.09 96.15 98.03 100.00 99.38 100.00 99.09 98.06 99.26 100.00 99.45 97.40 98.40 98.60 99.34 98.69 97.64 98.99 98.26 99.22 98.13 98.78 99.15 98.54 100.00 97.87 99.42 98.90 100.00 99.45 100.00 98.86 98.98 99.12 99.48 99.20 93.86 98.22 99.22 99.10 99.48 98.15 99.49 98.98 98.91 98.84 96.00 100.00 99.62 97.22 97.83 98.36 99.79 98.56 K intron_retention RI_chr2R_5006333_5006392,CG11784 chr2R + chr2R_5009954_5010023 chr2R_5009953_5009954;chr2R_5010023_5010024 chr2R_5009829_5009953;chr2R_5010024_5010072 0.00 0.00 NA NA NA NA NA 7.69 0.00 NA NA 1.82 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA 7.41 NA NA NA NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG42271,RI_chrX_14127297_14127804 chrX - chrX_14122473_14122536 chrX_14122472_14122473;chrX_14122536_14122537 chrX_14121924_14122472;chrX_14122537_14123270 0.00 0.00 3.85 22.58 0.00 5.00 0.00 0.00 2.56 NA NA 0.00 NA 0.00 3.33 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 4.00 0.00 0.00 0.00 K jcn_only_AA Aats-phe chr2R + chr2R_9857108_9857181 chr2R_9857108_9857176 chr2R_9855852_9857107;chr2R_9857182_9857407 100.00 98.95 98.86 100.00 100.00 98.36 100.00 100.00 99.35 100.00 98.46 99.17 97.87 98.15 100.00 97.65 100.00 100.00 98.57 100.00 98.15 100.00 99.03 100.00 97.78 100.00 100.00 100.00 98.18 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 98.96 100.00 100.00 99.30 100.00 100.00 100.00 98.75 99.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.23 100.00 100.00 K multi_cassette Jupiter,I_chr3R_7417030_7419354,I_chr3R_7418347_7445425,RE_chr3R_7419487_7429863,I_chr3R_7429934_7430307,I_chr3R_7429962_7445425,I_chr3R_7430006_7445425,RI_chr3R_7442748_7445425,RI_chr3R_7442793_7445425 chr3R - chr3R_7418347_7445425 chr3R_7418347_7419043;chr3R_7419077_7419354;chr3R_7419489_7429863;chr3R_7430006_7445425 chr3R_7419044_7419076;chr3R_7419355_7419488;chr3R_7429864_7430005 chr3R_7418247_7418346;chr3R_7445426_7445525 99.03 97.06 100.00 99.03 100.00 100.00 93.22 98.57 100.00 98.63 100.00 100.00 100.00 100.00 98.31 100.00 97.62 100.00 100.00 100.00 100.00 96.60 100.00 97.83 92.31 96.08 97.50 92.77 98.44 100.00 100.00 100.00 98.04 100.00 98.92 98.77 98.63 97.40 98.96 98.24 99.41 99.17 100.00 100.00 99.06 99.03 98.61 99.52 99.07 98.92 98.75 97.83 98.28 98.46 98.39 100.00 98.55 99.46 K jcn_only_AD Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911708_5913354 chr2R_5911708_5913333 chr2R_5911703_5911707;chr2R_5913355_5913433 35.14 NA 35.00 NA NA NA NA 35.14 35.90 NA NA NA NA NA NA 38.46 36.36 NA 35.00 34.62 NA NA 41.67 30.00 NA NA NA NA NA NA 54.55 NA NA 25.81 NA NA 47.83 NA NA 37.04 NA 34.29 NA 31.03 NA NA NA NA 37.93 NA NA NA NA NA 26.92 NA NA NA K intron_retention mfrn,I_chr3R_23770737_23770817,I_chr3R_23771063_23771153,I_chr3R_23771063_23772599 chr3R - chr3R_23771063_23772915 chr3R_23771062_23771063;chr3R_23772915_23772916 chr3R_23770974_23771062;chr3R_23772916_23773724 7.62 6.45 6.78 10.67 8.89 6.12 7.07 9.52 8.03 9.09 6.15 9.28 6.82 4.65 12.86 8.51 4.35 8.51 10.00 9.92 3.85 30.66 9.40 7.62 10.64 10.64 13.04 12.63 10.37 6.90 5.31 7.69 6.15 8.43 7.27 8.86 10.40 7.32 4.72 8.38 3.06 10.43 0.00 5.10 5.50 6.06 2.78 12.86 7.37 10.23 8.91 3.28 3.28 3.03 10.96 4.41 0.00 5.83 K intron_retention CG4896,REI_chr2L_1179197_1179859,I_chr2L_1191535_1191648 chr2L + chr2L_1177862_1177947 chr2L_1177861_1177862;chr2L_1177947_1177948 chr2L_1177765_1177861;chr2L_1177948_1178044 29.41 NA 20.00 29.41 NA NA 50.00 75.00 21.74 NA NA 16.67 NA NA 55.56 28.57 NA 41.67 54.55 35.00 NA 5.26 50.00 25.00 46.15 35.29 75.00 25.00 25.00 30.77 29.03 16.67 NA 27.27 36.36 56.25 16.67 NA 32.00 20.00 15.38 31.58 NA 35.29 NA 17.39 23.08 19.51 34.62 17.65 31.58 NA NA 20.00 35.29 36.36 NA 29.41 K alternative_acceptor CG32549,I_chrX_18286136_18286367,I_chrX_18286289_18286367,RI_chrX_18301919_18303082 chrX - chrX_18286289_18286367;chrX_18286194_18286367 chrX_18286136_18286367 chrX_18286368_18286467;chrX_18286073_18286135 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.59 0.00 1.10 0.00 0.73 0.00 1.12 0.00 0.45 0.00 0.00 0.47 0.56 0.00 0.00 0.58 0.00 0.78 0.83 3.54 2.50 0.53 0.66 0.00 0.00 0.67 0.72 0.56 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 1.12 1.12 1.03 0.00 0.88 0.79 0.00 0.00 K jcn_only_AA RI_chr3L_19787260_19787323,Ir76a,RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19795029_19795077;chr3L_19795029_19795086 chr3L_19795029_19795090 chr3L_19795020_19795028;chr3L_19795091_19795214 86.36 NA NA NA NA NA NA 77.27 86.36 NA NA NA NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 92.31 NA NA NA NA NA NA 84.62 NA NA NA NA NA NA NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2392054 chrX_2388671_2389073;chrX_2389272_2389644;chrX_2389762_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054 chrX_2389074_2389271;chrX_2389645_2389761;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2388641_2388670;chrX_2392055_2392148 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG8067,RI_chr2R_9871650_9871702 chr2R + chr2R_9871646_9871702 chr2R_9871645_9871646;chr2R_9871702_9871703 chr2R_9871550_9871645;chr2R_9871703_9871802 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 6.25 NA NA 0.00 5.56 6.67 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 K alternative_acceptor CG9526,I_chr2L_6457114_6457365,I_chr2L_6457278_6457337 chr2L + chr2L_6457114_6457365 chr2L_6457114_6457337 chr2L_6457014_6457113;chr2L_6457366_6457437 100.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 100.00 94.44 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 97.78 97.14 100.00 100.00 100.00 100.00 97.67 96.88 97.14 96.88 98.18 100.00 100.00 100.00 97.37 100.00 97.37 97.87 97.06 100.00 100.00 100.00 100.00 97.67 100.00 95.65 100.00 96.30 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG17494 chr2L + chr2L_22471985_22472618;chr2L_22471985_22472623 chr2L_22471985_22472552 chr2L_22471978_22471984;chr2L_22472624_22473865 100.00 98.72 100.00 100.00 98.95 100.00 99.60 100.00 100.00 97.67 100.00 99.54 100.00 96.83 100.00 99.61 100.00 99.07 100.00 100.00 100.00 100.00 100.00 98.89 100.00 100.00 100.00 100.00 100.00 100.00 99.12 100.00 98.53 100.00 98.85 100.00 100.00 97.80 100.00 98.48 98.96 99.05 98.04 100.00 100.00 100.00 100.00 98.46 98.53 100.00 98.10 98.04 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG7816,RI_chr3R_25691122_25694436 chr3R - chr3R_25690713_25690778 chr3R_25690719_25690778 chr3R_25690779_25691121;chr3R_25690611_25690712 99.19 99.18 97.48 99.44 99.17 99.18 98.85 98.18 98.82 99.11 100.00 98.67 99.06 100.00 98.83 99.40 100.00 99.43 99.19 98.82 100.00 99.43 99.28 100.00 100.00 99.14 100.00 100.00 98.32 100.00 99.38 100.00 98.80 98.63 100.00 100.00 100.00 100.00 100.00 98.62 100.00 99.24 98.10 96.75 97.47 99.28 98.89 97.06 99.09 98.97 99.24 98.95 97.50 98.21 97.14 100.00 100.00 100.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2389073;chrX_2389272_2389644;chrX_2389762_2395659 chrX_2387584_2387709;chrX_2388437_2388670;chrX_2389074_2389271;chrX_2389645_2389761 chrX_2387149_2387248;chrX_2395660_2395759 1.12 1.92 1.47 0.00 0.00 0.00 0.00 0.75 1.17 3.85 0.00 3.26 0.00 1.72 1.11 1.54 1.54 0.00 1.22 0.99 0.00 0.00 1.12 0.00 2.94 1.69 1.45 0.00 2.70 1.67 1.79 0.00 1.01 0.76 0.00 3.23 1.12 0.00 1.25 1.96 0.00 1.45 1.61 2.74 0.00 0.00 NA 1.54 1.12 0.00 2.04 0.00 2.08 NA 2.02 0.00 0.00 2.04 K intron_retention CG2004,I_chrX_8608130_8608508,RI_chrX_8608147_8608508,I_chrX_8608169_8608438 chrX - chrX_8608169_8608508 chrX_8608168_8608169;chrX_8608508_8608509 chrX_8608069_8608168;chrX_8608509_8608538 4.62 0.00 0.00 2.94 5.26 2.70 11.76 1.56 7.14 3.12 5.71 2.22 3.92 0.00 2.22 4.82 6.25 8.51 3.85 6.98 0.00 8.70 8.20 7.81 4.65 3.57 2.90 6.78 19.05 0.00 1.82 10.34 6.52 4.23 1.82 2.50 5.77 0.00 6.45 3.85 8.70 3.37 0.00 8.16 2.08 8.57 5.77 9.76 6.59 0.00 5.88 0.00 5.41 0.00 4.62 2.13 6.06 8.00 K jcn_only_AA CG3714,I_chr2L_4190825_4191774,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,I_chr2L_4196780_4197306,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4196780_4197964 chr2L_4196815_4197964 chr2L_4197965_4198000;chr2L_4196715_4196779 5.05 NA NA NA NA NA 15.38 NA 9.68 NA NA NA NA NA NA 5.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.17 NA NA 0.00 NA NA NA NA NA 9.52 4.55 NA NA NA NA NA NA 4.17 8.70 NA NA NA NA NA NA NA NA 3.85 K alternative_acceptor RI_chrX_502548_513324,CG13366,I_chrX_508729_508806,I_chrX_509497_513324,I_chrX_509727_511407,I_chrX_509727_511477,noncoding_21186,I_chrX_509834_511407,CRE_chrX_509851_511307,I_chrX_510004_511307,I_chrX_510004_511407,I_chrX_513176_513324,I_chrX_513519_513631 chrX - chrX_509834_511407;chrX_510004_511407 chrX_509727_511407 chrX_511408_511507;chrX_509715_509726 14.29 NA NA 0.00 NA NA NA 14.29 0.00 NA NA NA NA NA NA 20.00 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA K intron_retention klar,I_chr3L_462559_472609,RI_chr3L_517594_539898 chr3L - chr3L_453489_454108 chr3L_453488_453489;chr3L_454108_454109 chr3L_452838_453488;chr3L_454109_454405 1.91 1.76 1.37 5.03 0.79 3.33 4.08 2.28 2.33 1.47 1.50 5.73 5.26 1.61 2.08 2.61 0.87 1.80 4.62 2.25 1.72 3.17 1.13 2.20 0.76 0.83 5.08 5.75 2.11 3.79 1.12 1.52 1.97 2.19 0.76 1.39 1.67 0.49 1.91 0.00 2.38 2.33 1.64 2.48 0.00 2.19 0.65 4.00 3.19 2.42 0.88 1.59 0.69 0.85 2.91 0.00 2.04 0.00 K intron_retention nAcRbeta-21C chr2L + chr2L_545565_545815 chr2L_545564_545565;chr2L_545815_545816 chr2L_545371_545564;chr2L_545816_546443 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 3.49 0.00 0.62 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 8.24 0.00 0.00 1.96 0.00 0.47 0.00 5.08 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.35 1.10 1.92 0.00 0.00 1.83 1.41 1.11 1.12 0.00 0.00 2.38 0.00 1.87 0.00 0.00 0.00 1.32 0.25 0.00 K intron_retention Rpn2,CG11897 chr3R + chr3R_24979331_24979417 chr3R_24979330_24979331;chr3R_24979417_24979418 chr3R_24979325_24979330;chr3R_24979418_24980395 18.18 13.46 22.64 25.86 5.36 30.23 14.29 20.91 14.37 13.79 16.28 29.55 5.26 15.38 16.13 18.80 13.24 18.37 11.58 14.61 8.00 21.43 17.46 15.38 56.67 31.08 35.85 27.03 62.50 19.51 13.25 18.18 30.30 22.22 36.00 53.85 8.00 14.71 18.18 15.00 48.15 16.10 14.81 12.07 8.70 29.03 11.63 28.57 23.21 11.76 17.50 14.00 15.79 26.67 23.68 21.21 20.00 38.10 K jcn_only_AD I_chr3R_19825840_19825904,Miro chr3R - chr3R_19860752_19861009 chr3R_19860752_19860985 chr3R_19860087_19860751;chr3R_19861010_19861048 72.97 76.47 80.00 60.47 71.43 68.00 46.88 71.05 62.07 NA 46.88 77.27 73.91 65.22 81.08 60.98 52.17 80.00 66.67 74.55 86.67 77.14 81.54 69.49 45.95 46.43 75.31 81.82 91.18 72.97 60.00 80.77 60.71 85.71 75.00 74.42 81.48 75.51 75.81 55.17 60.00 72.00 NA 82.05 61.54 73.68 83.33 71.43 80.43 71.21 76.39 67.57 79.17 67.92 70.83 75.44 57.58 50.00 K jcn_only_AD bowl,RI_chr2L_3772695_3773616 chr2L + chr2L_3771785_3772460;chr2L_3771874_3772460 chr2L_3771755_3772460 chr2L_3772461_3772694;chr2L_3771707_3771754 9.09 NA NA NA NA NA 8.33 9.09 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.76 NA NA NA K intron_retention CG5288 chr3L - chr3L_8978332_8978383 chr3L_8978331_8978332;chr3L_8978383_8978384 chr3L_8978153_8978331;chr3L_8978384_8978408 75.00 57.14 83.33 89.47 90.91 NA 93.33 66.67 67.86 NA 88.24 75.00 76.47 NA 90.00 60.00 75.00 87.50 77.78 82.61 70.00 NA 63.16 75.00 82.35 90.91 75.00 NA NA 46.15 75.00 NA NA 84.62 NA NA 77.78 69.23 71.43 50.00 NA 77.78 NA 40.00 NA NA 54.55 NA 80.00 88.89 57.14 61.54 NA NA 76.92 72.73 58.82 NA K jcn_only_AD CG2186 chrX + chrX_10751969_10752320 chrX_10751976_10752320 chrX_10752321_10752412;chrX_10751743_10751968 0.00 1.39 0.00 1.61 0.00 2.38 0.00 0.00 1.44 0.00 0.00 1.18 0.00 0.00 0.00 0.00 2.44 4.26 2.33 0.89 0.00 2.00 0.00 1.30 3.64 0.00 2.13 0.00 0.00 1.72 1.79 NA 2.13 0.00 0.00 2.13 0.85 0.00 0.91 0.00 NA 2.35 2.00 1.33 0.00 2.22 2.44 0.00 0.00 0.00 2.56 0.00 0.00 0.00 2.00 0.00 0.00 NA K intron_retention CG1347 chr3R + chr3R_1503325_1503386 chr3R_1503324_1503325;chr3R_1503386_1503387 chr3R_1502991_1503324;chr3R_1503387_1503486 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.61 0.00 0.00 0.00 2.38 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL30,I_chr2L_19008540_19008948,REI_chr2L_19008544_19008723,I_chr2L_19008544_19008918,snoRNA:Me28S-A2113 chr2L - chr2L_19008540_19008948 chr2L_19008539_19008540;chr2L_19008948_19008949 chr2L_19008444_19008539;chr2L_19008949_19009018 99.41 99.32 99.38 99.55 100.00 99.36 99.48 98.41 99.48 100.00 100.00 99.67 99.28 100.00 100.00 100.00 99.22 99.29 100.00 99.69 99.33 100.00 100.00 98.84 99.16 99.22 98.99 99.10 99.17 98.85 100.00 100.00 99.01 100.00 100.00 99.08 99.45 99.17 100.00 99.17 98.37 99.67 99.17 98.91 99.31 100.00 99.41 99.02 98.97 99.44 98.96 98.81 99.13 99.49 100.00 100.00 99.61 99.55 K intron_retention growl chr3R + chr3R_229176_230190 chr3R_229175_229176;chr3R_230190_230191 chr3R_229126_229175;chr3R_230191_230361 78.34 NA NA NA NA NA NA NA 63.64 NA NA 90.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG6812 chr3L + chr3L_19056810_19057426 chr3L_19056817_19057426 chr3L_19057427_19057695;chr3L_19056268_19056809 100.00 100.00 88.89 100.00 NA NA NA NA 93.33 NA NA 92.86 NA NA 100.00 100.00 NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 90.91 NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA 86.67 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG4433,I_chr3R_15845478_15846094 chr3R - chr3R_15845478_15846094;chr3R_15845478_15846069 chr3R_15845478_15846006 chr3R_15845378_15845477;chr3R_15846095_15846194 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3L_1494947_1496080,pUf68,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1500389_1501350 chr3L_1500388_1500389;chr3L_1501350_1501351 chr3L_1500289_1500388;chr3L_1501351_1501397 92.86 NA NA 100.00 NA NA NA 87.50 95.00 NA 93.33 100.00 78.95 90.00 NA 90.00 NA NA 84.62 95.00 100.00 NA 100.00 NA NA NA 90.00 90.00 NA 100.00 NA NA NA 90.91 87.50 NA 88.89 NA NA 92.86 NA 90.91 NA 100.00 NA 91.67 100.00 88.89 100.00 90.00 100.00 NA NA NA NA 100.00 NA 100.00 K intron_retention CG18177,I_chr3L_9723741_9723833 chr3L + chr3L_9720670_9720886 chr3L_9720669_9720670;chr3L_9720886_9720887 chr3L_9720027_9720669;chr3L_9720887_9721007 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 4.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 3.85 0.00 0.00 4.00 0.00 7.41 0.00 0.00 K alternative_acceptor mask,I_chr3R_20073365_20073461 chr3R + chr3R_20065480_20065550 chr3R_20065480_20065541 chr3R_20065264_20065479;chr3R_20065551_20066766 85.71 80.95 85.71 90.70 94.74 88.89 80.00 84.31 81.03 92.31 94.44 83.87 85.71 72.00 79.41 86.67 96.00 92.86 83.33 80.85 85.00 79.41 90.24 85.19 88.24 70.00 90.48 71.43 73.68 90.24 80.00 88.89 83.87 90.24 84.62 92.86 88.89 94.74 86.84 74.29 72.73 78.18 100.00 95.65 77.78 76.92 87.50 85.19 84.44 NA 97.06 93.33 71.43 87.50 80.65 87.50 NA 93.33 K jcn_only_AD Myo31DF,I_chr2L_10506249_10506683,I_chr2L_10506446_10506542 chr2L - chr2L_10506107_10506683 chr2L_10506107_10506542 chr2L_10505926_10506106;chr2L_10506684_10506780 6.54 9.57 5.45 12.69 5.19 8.13 20.00 10.59 6.64 9.82 12.94 4.20 14.08 2.68 7.75 6.79 7.81 7.63 7.55 3.14 8.96 2.75 3.03 9.09 7.35 6.67 6.19 4.42 7.14 4.35 4.60 5.71 12.84 7.10 4.95 3.85 6.54 8.18 2.65 4.09 5.95 7.73 8.42 2.35 4.76 6.35 6.45 4.61 6.80 8.99 3.95 5.34 3.92 6.58 7.25 1.20 1.22 3.28 K jcn_only_AA htt,I_chr3R_24527763_24528033,I_chr3R_24542203_24543363 chr3R + chr3R_24542203_24544152 chr3R_24542203_24543363 chr3R_24542103_24542202;chr3R_24544153_24544634 1.49 10.34 3.45 0.00 0.00 0.00 5.26 0.00 1.92 NA 9.09 1.49 3.23 0.00 3.33 4.17 0.00 NA 0.00 4.76 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA 7.89 NA 4.00 2.00 NA 0.00 4.88 0.00 0.00 0.00 NA 0.00 4.00 2.78 NA NA NA NA 2.44 NA 0.00 NA NA NA 2.27 NA NA NA K intron_retention dnc,I_chrX_3150245_3150319,I_chrX_3150351_3152643 chrX + chrX_3150245_3152643 chrX_3150244_3150245;chrX_3152643_3152644 chrX_3150235_3150244;chrX_3152644_3152740 25.00 NA 22.73 38.89 NA 30.77 38.89 31.82 NA NA NA 11.54 25.00 NA 19.05 37.04 NA 20.00 25.00 23.81 NA NA NA NA NA NA NA NA NA NA 36.36 NA NA 21.43 NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA 27.50 NA NA NA NA NA 37.50 NA NA NA K intron_retention Sc2 chr3L + chr3L_3904286_3904505 chr3L_3904285_3904286;chr3L_3904505_3904506 chr3L_3904069_3904285;chr3L_3904506_3904621 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.26 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD prominin-like,I_chr3L_3116032_3116690,I_chr3L_3121200_3123087 chr3L - chr3L_3116032_3117082 chr3L_3116032_3116690 chr3L_3115932_3116031;chr3L_3117083_3117256 0.00 0.00 0.18 0.13 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.05 0.00 0.00 0.11 0.10 0.00 0.07 0.00 0.06 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.26 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10260 chrX + chrX_2526566_2526637 chrX_2526565_2526566;chrX_2526637_2526638 chrX_2526377_2526565;chrX_2526638_2526884 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 1.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG8128,I_chrX_15591697_15591816 chrX + chrX_15591697_15591816;chrX_15591697_15592355 chrX_15591697_15592065 chrX_15591597_15591696;chrX_15592356_15592720 11.11 10.00 5.26 16.67 NA 6.25 30.43 10.00 7.41 11.11 28.57 10.34 25.00 11.11 4.76 15.62 12.50 9.52 11.76 12.50 5.56 16.67 10.34 5.56 15.00 20.00 13.33 6.25 9.52 11.11 14.29 13.04 9.68 7.41 14.29 13.64 12.00 11.54 5.13 6.67 16.67 16.22 6.25 9.52 11.11 12.50 7.14 8.70 14.71 13.64 4.88 4.55 6.67 6.67 14.29 11.11 9.38 3.23 K jcn_only_AD CYLD chr2L - chr2L_10299221_10299761 chr2L_10299221_10299746 chr2L_10299044_10299220;chr2L_10299762_10299827 3.57 NA NA 4.00 NA NA 4.26 3.57 0.00 NA NA 4.55 NA 7.69 NA 2.13 NA NA NA 3.57 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341925_20342041;chr3L_20341636_20342041;chr3L_20341509_20342041;chr3L_20341865_20342041;chr3L_20341486_20342041;chr3L_20341751_20342041;chr3L_20341530_20342041;chr3L_20341629_20342041;chr3L_20341598_20342041;chr3L_20341759_20342041 chr3L_20341522_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 41.18 39.39 46.67 38.53 43.33 34.88 65.43 20.49 50.70 30.43 41.86 44.00 52.38 36.84 38.57 57.69 41.54 41.18 52.38 47.24 48.21 26.09 36.84 42.86 29.27 47.14 45.16 55.56 38.71 37.04 45.98 40.91 36.59 38.93 NA 41.38 46.94 50.00 41.38 67.80 31.82 38.06 54.39 42.86 35.14 26.67 41.03 40.00 40.56 44.68 38.71 32.50 23.33 NA 42.86 40.00 41.54 29.63 K jcn_only_AA PyK,CG7069,CG18596,I_chr3R_18203637_18203690,I_chr3R_18209085_18209133 chr3R + chr3R_18193391_18194506;chr3R_18193391_18196509;chr3R_18193391_18194501 chr3R_18193391_18196485 chr3R_18193322_18193390 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CRMP,I_chr3R_1401648_1403314 chr3R + chr3R_1402136_1403314;chr3R_1401648_1403314 chr3R_1401648_1402757,chr3R_1402136_1402757;chr3R_1402982_1403314 chr3R_1402758_1402981 chr3R_1401548_1401647;chr3R_1403315_1403414 98.15 100.00 90.91 91.30 100.00 100.00 100.00 92.31 100.00 83.33 NA 100.00 100.00 100.00 100.00 100.00 87.50 100.00 87.50 100.00 100.00 94.12 81.82 96.00 100.00 90.00 100.00 83.33 77.78 92.86 94.44 90.00 100.00 100.00 90.91 81.25 96.30 85.71 95.83 100.00 77.78 100.00 100.00 100.00 100.00 94.44 100.00 93.33 100.00 94.12 93.33 100.00 92.86 100.00 100.00 93.75 100.00 92.86 K intron_retention janA,RI_chr3R_25864678_25864966,I_chr3R_25864692_25864783,I_chr3R_25871509_25871807 chr3R - chr3R_25865129_25865194 chr3R_25865128_25865129;chr3R_25865194_25865195 chr3R_25864967_25865128;chr3R_25865195_25865252 15.15 11.84 11.27 22.12 9.23 15.69 24.72 14.89 13.48 11.63 23.08 13.89 11.63 10.00 11.90 15.91 17.31 10.67 13.04 19.51 15.15 28.00 22.97 15.91 19.30 21.92 37.97 35.19 46.81 18.18 13.00 12.77 18.75 12.90 15.38 32.35 14.10 10.61 9.26 14.85 48.48 14.93 10.87 9.52 15.52 24.59 12.50 31.58 13.27 13.51 22.22 20.75 11.25 16.67 17.81 18.29 12.08 10.81 N alternative_donor Syb chr2R - chr2R_6137333_6137873;chr2R_6137333_6138021 chr2R_6137333_6138451 chr2R_6137005_6137332;chr2R_6138452_6138649 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Arp66B chr3L - chr3L_8107297_8107356 chr3L_8107296_8107297;chr3L_8107356_8107357 chr3L_8107213_8107296;chr3L_8107357_8107893 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.16 0.00 0.00 0.45 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG12414,I_chr3L_23220648_23244552,I_chr3L_23242363_23255807 chr3L + chr3L_23220648_23255807 chr3L_23220648_23231936;chr3L_23232118_23255807 chr3L_23231937_23232117 chr3L_23220571_23220647;chr3L_23255808_23255814 57.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 57.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Shawn_Tyler,CG14207,CE_chrX_19503187_19504413 chrX + chrX_19504657_19504728 chrX_19504656_19504657;chrX_19504728_19504729 chrX_19504561_19504656;chrX_19504729_19505140 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 5.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.21 0.00 0.00 0.63 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.61 K jcn_only_AD RI_chrX_6482284_6482336,Pat1,I_chrX_6489999_6490050,APC7 chrX + chrX_6489994_6490050 chrX_6489999_6490050 chrX_6490051_6490150;chrX_6489899_6489993 6.52 NA 15.00 6.98 NA NA 6.38 11.11 10.00 10.00 6.06 7.84 6.45 NA NA 6.52 4.35 0.00 3.70 14.71 NA 2.13 9.09 NA NA 0.00 10.34 0.00 4.55 0.00 15.79 11.63 13.48 4.44 0.00 12.50 NA NA 10.00 5.00 7.69 4.08 7.69 14.81 6.67 11.86 NA 3.54 6.38 3.70 NA NA NA NA 12.00 NA 5.00 5.77 K intron_retention scaf6,EI_chr3L_17037760_17037808 chr3L - chr3L_17032731_17033538 chr3L_17032730_17032731;chr3L_17033538_17033539 chr3L_17032656_17032730;chr3L_17033539_17033701 41.67 NA NA NA NA NA NA NA 47.06 NA NA 57.14 50.00 NA NA 56.25 NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA 12.20 NA NA 42.86 NA 41.67 NA NA NA 41.67 NA NA NA NA NA NA NA NA 33.33 NA 33.33 NA NA NA NA NA NA NA K alternative_acceptor CG34015 chrX - chrX_16341991_16342063 chrX_16341996_16342063 chrX_16342064_16342132;chrX_16341931_16341990 100.00 90.91 100.00 100.00 88.89 NA 94.44 94.44 90.91 NA NA 100.00 87.50 100.00 100.00 94.74 100.00 100.00 88.89 93.33 100.00 NA 87.50 100.00 NA 100.00 91.67 NA NA 100.00 100.00 NA NA 93.75 100.00 NA 100.00 100.00 81.82 100.00 NA 95.00 100.00 NA NA NA 100.00 NA 100.00 90.91 100.00 87.50 NA NA 90.91 100.00 93.75 88.89 K intron_retention Dph5,RI_chr3R_18408634_18408707,CG33107 chr3R - chr3R_18408638_18408707 chr3R_18408637_18408638;chr3R_18408707_18408708 chr3R_18407696_18408637;chr3R_18408708_18408807 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.62 1.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG2747 chr3R - chr3R_3847672_3848339 chr3R_3847672_3848178;chr3R_3848212_3848339 chr3R_3848179_3848211 chr3R_3843930_3847671;chr3R_3848340_3848613 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 1.39 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 2.70 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 6.67 4.35 0.00 N cassette CG2076 chrX + chrX_10985226_10985757 chrX_10985226_10985323;chrX_10985661_10985757 chrX_10985324_10985660 chrX_10985084_10985225;chrX_10985758_10985890 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.95 97.09 100.00 100.00 100.00 100.00 100.00 94.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.73 100.00 100.00 100.00 97.53 100.00 100.00 100.00 100.00 K alternative_acceptor CG10375 chr3R + chr3R_19593593_19593800 chr3R_19593593_19593730 chr3R_19593346_19593592;chr3R_19593801_19594051 90.00 100.00 86.36 93.18 94.44 77.27 96.88 96.15 85.42 90.00 100.00 90.00 100.00 82.61 84.62 90.00 94.74 100.00 100.00 97.30 100.00 88.89 85.19 87.50 100.00 100.00 93.94 93.75 75.00 73.33 71.43 77.78 87.50 88.57 94.44 91.67 86.67 93.33 80.00 74.07 95.00 95.45 95.24 88.89 90.00 83.33 77.27 90.00 91.30 88.00 83.33 93.33 68.75 84.21 88.24 95.24 87.88 75.00 K alternative_donor Trp1 chr2L + chr2L_10009419_10009480 chr2L_10009422_10009480 chr2L_10009481_10009536;chr2L_10009393_10009418 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA Acf1,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27620212_27620703 chr3R_27620212_27620267 chr3R_27620112_27620211;chr3R_27620704_27621934 0.68 3.92 1.45 3.12 2.22 0.00 1.41 1.00 0.00 0.00 0.00 2.07 1.75 0.00 0.00 3.00 2.38 1.59 3.61 0.00 1.69 0.00 1.22 1.52 2.33 1.67 0.00 0.00 1.28 0.00 0.00 3.23 4.23 0.00 1.69 0.00 0.00 0.00 1.98 0.66 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.74 0.68 0.00 0.00 2.70 2.70 0.00 0.00 2.86 0.00 6.12 N intron_retention CG5594,CG2812 chr2R + chr2R_19796036_19797200 chr2R_19796035_19796036;chr2R_19797200_19797201 chr2R_19796027_19796035;chr2R_19797201_19797332 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 67.19 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Paf-AHalpha chrX - chrX_15678630_15678697 chrX_15678629_15678630;chrX_15678697_15678698 chrX_15678163_15678629;chrX_15678698_15679162 5.56 0.00 5.56 6.67 18.75 8.70 2.70 10.00 8.51 NA NA 13.89 0.00 6.25 8.33 12.50 NA 0.00 15.00 4.08 4.35 10.34 0.00 15.00 0.00 11.76 18.18 NA 0.00 0.00 4.35 0.00 7.69 3.57 0.00 8.33 16.67 5.56 8.33 8.11 0.00 7.32 0.00 NA 2.86 0.00 11.76 4.55 10.53 10.00 0.00 NA 0.00 4.55 7.41 0.00 0.00 0.00 K alternative_donor gus,I_chr2R_1009158_1009345,RI_chr2R_1009158_1011540,I_chr2R_1009346_1015730 chr2R - chr2R_1009158_1009277;chr2R_1009158_1009241 chr2R_1009158_1009273 chr2R_1009058_1009157;chr2R_1009278_1009300 16.67 NA NA 21.43 NA NA NA 27.27 0.00 NA NA 25.00 16.67 NA NA 33.33 NA NA NA 14.29 NA NA NA 16.67 NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA 14.29 0.00 NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA 33.33 K alternative_acceptor CG9776 chr3R - chr3R_153740_153858 chr3R_153800_153858 chr3R_153859_154129;chr3R_153532_153739 5.17 5.77 5.00 41.03 3.23 5.26 13.64 4.88 5.41 6.25 7.41 5.06 5.56 10.00 3.77 6.38 9.68 4.08 6.98 8.33 3.23 4.17 2.88 2.90 4.17 4.65 2.90 3.85 2.38 10.71 5.88 3.23 2.56 7.27 7.89 5.56 3.28 0.00 3.39 1.54 4.55 9.33 13.33 1.59 8.33 4.62 2.44 8.11 5.63 1.92 7.14 7.32 5.17 1.27 8.16 4.11 5.48 5.56 K intron_retention ird5,CG10185 chr3R - chr3R_11873877_11873963 chr3R_11873876_11873877;chr3R_11873963_11873964 chr3R_11873080_11873876;chr3R_11873964_11874533 96.55 94.44 95.65 100.00 100.00 84.21 90.91 97.37 97.96 100.00 100.00 96.77 94.74 95.00 96.15 96.55 100.00 100.00 95.24 95.56 91.30 100.00 96.15 95.00 92.86 100.00 100.00 100.00 89.47 100.00 96.55 94.74 92.31 97.62 100.00 100.00 88.24 94.12 100.00 100.00 93.75 97.87 90.00 100.00 95.45 96.67 100.00 92.86 93.33 94.74 96.15 92.31 100.00 92.86 100.00 100.00 94.12 97.22 K intron_retention Pka-C1,I_chr2L_9698234_9698701 chr2L - chr2L_9698234_9699114 chr2L_9698233_9698234;chr2L_9699114_9699115 chr2L_9698134_9698233;chr2L_9699115_9699287 0.00 0.00 0.00 0.00 0.00 0.00 3.16 0.00 0.00 NA NA 1.19 0.00 0.00 0.00 1.61 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 3.92 0.00 14.29 3.85 0.00 0.00 0.00 0.00 1.50 0.00 3.23 NA 0.00 0.00 0.00 0.00 1.74 0.00 0.00 0.00 2.38 0.00 0.00 1.31 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention RabX6 chr3L + chr3L_690565_690617 chr3L_690564_690565;chr3L_690617_690618 chr3L_690496_690564;chr3L_690618_690799 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 88.89 NA 90.91 NA 100.00 100.00 91.67 NA 100.00 91.67 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 NA NA 88.89 100.00 92.86 NA NA 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 NA 94.12 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 NA K intron_retention Zasp52,I_chr2R_11652341_11652627,RI_chr2R_11652953_11660545,RI_chr2R_11654219_11660545,F_chr2R_11660759_11661284,I_chr2R_11690993_11701987 chr2R - chr2R_11652341_11652627 chr2R_11652340_11652341;chr2R_11652627_11652628 chr2R_11652241_11652340;chr2R_11652628_11652727 9.54 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA 25.00 NA NA NA NA 0.00 NA NA NA NA NA NA 10.00 NA NA NA NA 0.00 11.11 NA 9.09 NA NA NA NA NA NA NA NA NA 0.00 K intron_retention CG42574,RI_chr3R_627714_636393,Hus1-like,RI_chr3R_634997_636393,I_chr3R_636510_637704 chr3R - chr3R_634997_636393 chr3R_634996_634997;chr3R_636393_636394 chr3R_634897_634996;chr3R_636394_636493 10.81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor pAbp,I_chr2R_14027838_14028996 chr2R + chr2R_14027838_14028996 chr2R_14027838_14028992 chr2R_14027738_14027837;chr2R_14028997_14029096 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention alph,I_chr3R_25417890_25422962,chr3R_25434193_25434663.0,chr3R_25438076_25442069.0 chr3R + chr3R_25423196_25423885 chr3R_25423195_25423196;chr3R_25423885_25423886 chr3R_25423141_25423195;chr3R_25423886_25424323 3.54 1.69 3.08 3.20 3.45 2.74 5.97 3.54 4.41 5.26 0.00 11.36 8.70 2.67 5.26 6.84 0.00 0.00 4.65 4.22 0.00 16.67 5.41 5.56 0.00 6.49 10.61 30.00 4.29 2.56 3.37 1.89 0.00 3.88 3.57 5.19 5.71 6.25 3.03 6.87 1.41 4.95 3.77 0.00 2.44 3.51 2.82 1.27 5.56 7.69 1.47 5.00 1.33 2.60 3.33 0.00 4.35 1.75 K jcn_only_AA CG1275,I_chr3L_2261108_2261339 chr3L - chr3L_2253987_2257111 chr3L_2255823_2257111 chr3L_2257112_2257471 0.00 0.00 0.58 0.00 0.77 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.62 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.36 0.00 0.00 0.00 0.00 0.00 0.60 1.89 0.33 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 2.74 0.71 0.00 0.00 0.00 0.00 1.18 K intron_retention pix,I_chr3L_8967436_8967756 chr3L - chr3L_8967448_8967756 chr3L_8967447_8967448;chr3L_8967756_8967757 chr3L_8967234_8967447;chr3L_8967757_8967844 0.28 0.39 0.00 0.19 0.00 0.00 0.54 0.31 0.31 0.00 0.00 0.22 0.00 0.30 0.00 0.00 0.00 0.00 0.42 0.29 0.42 0.45 0.52 0.69 0.00 0.70 0.53 0.87 1.67 0.49 0.47 1.18 0.00 0.32 0.00 0.00 0.16 0.22 0.00 0.45 3.06 0.21 0.28 0.28 0.81 0.68 0.38 2.06 0.19 0.72 0.78 0.00 0.27 0.00 0.17 0.00 0.64 0.00 K jcn_only_AA CG5482,I_chr2R_14519136_14519239 chr2R - chr2R_14519136_14519254 chr2R_14519141_14519254 chr2R_14519255_14519262;chr2R_14519036_14519135 2.99 5.26 2.13 3.70 3.70 0.00 5.08 5.68 5.19 NA 6.45 2.78 6.67 2.56 2.04 5.15 6.67 0.00 4.55 4.50 0.00 6.45 4.69 0.00 0.00 0.00 4.00 NA 3.70 2.63 6.45 0.00 NA 1.54 2.70 7.32 9.09 2.70 0.00 1.96 NA 3.53 2.94 0.00 0.00 0.00 2.86 4.55 3.41 3.85 3.70 0.00 11.11 0.00 2.99 0.00 4.35 2.27 K alternative_donor endos,I_chr3L_14024099_14024488,I_chr3L_14024103_14024158,I_chr3L_14024103_14024546,I_chr3L_14024496_14024546 chr3L - chr3L_14024103_14024488;chr3L_14024103_14024546;chr3L_14024103_14024407 chr3L_14024103_14024158 chr3L_14024003_14024102;chr3L_14024547_14024588 1.41 1.25 2.35 1.54 1.52 1.41 2.08 0.78 1.12 2.99 0.00 3.15 1.16 1.32 0.93 1.89 0.00 1.22 1.00 1.27 0.00 5.45 1.12 0.85 1.96 1.16 2.02 3.51 6.45 1.61 1.35 1.23 4.60 0.84 3.03 1.82 2.56 1.64 1.25 2.19 4.55 1.26 1.37 1.45 2.04 2.65 1.35 2.20 1.31 1.02 1.28 1.56 1.67 1.41 1.04 3.66 1.02 2.24 K intron_retention CG32699,I_chrX_9468866_9473514,CG42395 chrX - chrX_9469080_9473514 chrX_9469079_9469080;chrX_9473514_9473515 chrX_9468934_9469079;chrX_9473515_9473614 1.16 0.00 1.50 2.50 1.80 1.61 1.72 3.09 0.78 2.11 0.00 1.83 2.11 2.73 1.72 2.53 1.16 0.00 1.38 1.68 0.00 4.69 0.00 1.02 0.00 0.00 2.13 0.00 2.15 2.01 0.81 0.00 1.83 2.59 1.72 2.06 0.00 0.00 0.62 0.00 0.00 2.14 2.35 2.30 0.00 0.72 0.00 4.55 1.04 0.00 0.00 0.00 0.00 0.00 1.99 0.00 0.00 2.30 K intron_retention CG42550 chr3R - chr3R_3826595_3826647 chr3R_3826594_3826595;chr3R_3826647_3826648 chr3R_3826527_3826594;chr3R_3826648_3826710 39.29 34.62 38.71 38.30 29.41 50.00 40.48 38.71 37.88 37.50 38.10 42.22 30.77 47.83 46.88 46.97 35.00 43.33 48.28 37.50 33.33 NA 42.86 32.14 40.00 36.36 34.29 NA NA 23.53 42.86 39.13 NA 39.29 50.00 55.00 31.25 40.00 29.17 44.12 60.00 31.43 48.15 50.00 47.83 45.95 34.62 38.46 38.71 48.48 50.00 34.62 75.00 31.25 45.45 38.89 57.50 62.50 K intron_retention Mtch,RI_chr3L_184729_185366,I_chr3L_185367_185925 chr3L + chr3L_185075_185134 chr3L_185074_185075;chr3L_185134_185135 chr3L_184935_185074;chr3L_185135_185303 0.00 0.97 0.83 5.04 0.00 0.88 0.00 0.00 1.65 0.00 0.00 0.58 0.00 1.08 2.54 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 1.27 0.00 1.38 0.00 6.19 0.00 0.00 1.19 0.00 0.67 4.60 0.00 1.15 0.00 0.00 0.00 1.82 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG2126,RI_chr3R_27601238_27601280,RI_chr3R_27602105_27602308 chr3R - chr3R_27601225_27601280 chr3R_27601224_27601225;chr3R_27601280_27601281 chr3R_27601138_27601224;chr3R_27601281_27601380 0.00 0.00 0.00 23.68 0.00 0.00 6.25 5.56 0.00 0.00 4.76 0.00 4.00 0.00 0.00 2.70 NA 0.00 0.00 6.45 NA 0.00 0.00 0.00 0.00 13.33 9.68 10.00 4.76 0.00 0.00 0.00 0.00 0.00 NA 5.88 0.00 0.00 0.00 5.41 9.09 0.00 NA 0.00 6.67 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 4.44 3.45 K intron_retention Camta,RI_chr2R_5364752_5364878 chr2R + chr2R_5358853_5358925 chr2R_5358852_5358853;chr2R_5358925_5358926 chr2R_5358781_5358852;chr2R_5358926_5359070 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K intron_retention HP5 chrX + chrX_11350521_11350687 chrX_11350520_11350521;chrX_11350687_11350688 chrX_11349315_11350520;chrX_11350688_11350915 13.16 17.39 8.70 56.52 15.38 9.52 20.00 12.00 14.29 0.00 25.00 13.16 31.25 NA 6.90 15.38 NA 13.33 22.22 13.16 NA 26.67 9.09 21.43 22.22 36.36 10.53 0.00 15.38 8.33 15.38 NA 3.45 25.00 20.00 27.78 8.82 8.00 16.67 9.43 25.00 7.69 0.00 0.00 16.67 17.65 11.11 13.16 17.24 0.00 8.70 4.55 0.00 5.26 14.29 9.52 NA 0.00 K alternative_acceptor CG8594 chr2R + chr2R_8461459_8461553 chr2R_8461459_8461517 chr2R_8461392_8461458;chr2R_8461554_8461619 99.27 98.33 100.00 99.27 100.00 98.55 99.12 100.00 100.00 100.00 98.61 99.23 98.65 100.00 98.68 100.00 100.00 100.00 97.59 98.08 97.01 100.00 98.90 98.70 97.67 98.78 98.70 95.83 97.83 100.00 98.75 98.04 100.00 100.00 100.00 100.00 98.59 100.00 98.53 100.00 98.31 99.34 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.77 97.96 97.96 98.00 99.03 100.00 100.00 98.65 K jcn_only_AD CG40191,I_chr2RHet_392279_392824 chr2RHet + chr2RHet_391927_392824;chr2RHet_392279_392824 chr2RHet_392686_392824 chr2RHet_392825_392923 77.14 NA NA NA NA 81.82 NA 81.82 62.50 NA NA 77.14 NA 84.62 65.00 83.72 NA 70.00 85.71 80.00 NA NA 61.90 82.61 NA NA 86.67 NA NA NA 75.00 NA NA 76.67 85.71 NA NA NA NA NA 48.00 84.00 NA NA NA 77.78 73.53 NA 85.71 NA 67.74 NA NA 74.07 NA 73.91 68.00 NA K intron_retention nimB1 chr2L + chr2L_13964732_13964796 chr2L_13964731_13964732;chr2L_13964796_13964797 chr2L_13964670_13964731;chr2L_13964797_13964865 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 90.91 92.86 NA 91.67 100.00 96.55 88.89 NA 90.91 NA 100.00 91.67 100.00 NA NA NA 96.67 90.00 100.00 100.00 NA NA NA 87.50 100.00 91.67 90.91 88.89 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 NA NA NA 100.00 100.00 100.00 90.91 K multi_cassette AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9003790_9007675 chrX_9003790_9005114;chrX_9005177_9005419;chrX_9005562_9005630;chrX_9005820_9005886;chrX_9006126_9006195;chrX_9006273_9007675 chrX_9005115_9005176;chrX_9005420_9005561;chrX_9005631_9005819;chrX_9005887_9006125;chrX_9006196_9006272 chrX_9003721_9003789;chrX_9007676_9007775 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.33 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 96.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG31431 chr3R + chr3R_17696730_17697703 chr3R_17696729_17696730;chr3R_17697703_17697704 chr3R_17696406_17696729;chr3R_17697704_17697862 7.14 7.55 6.67 8.47 6.52 5.77 7.87 6.00 5.99 5.26 5.56 8.91 6.86 4.76 8.09 7.36 6.74 5.74 6.25 6.71 3.37 4.65 10.11 8.51 10.71 15.79 10.81 11.48 20.00 7.14 9.00 6.12 7.78 7.10 5.08 9.52 6.98 7.55 5.21 8.40 8.82 7.84 8.86 8.47 3.39 6.32 9.21 6.67 8.23 7.81 7.89 6.12 5.13 4.08 7.97 6.33 5.63 8.62 K intron_retention tef,CG8950 chr2R - chr2R_12942682_12942739 chr2R_12942681_12942682;chr2R_12942739_12942740 chr2R_12942031_12942681;chr2R_12942740_12943803 41.42 60.00 45.45 58.82 NA NA 45.45 37.50 37.50 NA NA 30.77 25.00 NA NA 50.00 NA NA 23.08 40.00 NA NA 63.64 41.67 45.45 47.06 40.00 NA NA NA 36.36 NA NA 45.45 NA 81.82 NA NA NA 53.85 NA 41.18 NA NA NA 37.50 NA NA 42.86 30.77 33.33 NA NA NA 31.58 NA NA NA K intron_retention CG4825,Rcd2 chr3L - chr3L_20522856_20531997 chr3L_20522855_20522856;chr3L_20531997_20531998 chr3L_20521138_20522855;chr3L_20531998_20532174 19.64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor REI_chr3R_7450909_7451196,CG6813,F_chr3R_7451635_7451822,I_chr3R_7463337_7463512,I_chr3R_7468928_7472509 chr3R - chr3R_7451666_7451947 chr3R_7451666_7451724 chr3R_7451420_7451665;chr3R_7451948_7452076 100.00 100.00 100.00 90.00 75.00 NA 100.00 100.00 91.67 NA NA 90.00 100.00 100.00 100.00 100.00 100.00 57.14 100.00 100.00 NA 100.00 100.00 83.33 NA 100.00 87.50 NA NA NA 83.33 NA 85.71 90.91 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 90.91 87.50 NA NA 100.00 NA 87.50 100.00 100.00 88.89 K intron_retention CG2316,REI_chr4_205422_208622,I_chr4_206537_206603,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_213991,RI_chr4_210688_214450 chr4 - chr4_206543_206603 chr4_206542_206543;chr4_206603_206604 chr4_206453_206542;chr4_206604_206703 0.00 0.00 0.00 1.65 0.00 0.00 0.79 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 1.56 0.00 4.55 0.00 0.00 3.45 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1667,RI_chr2R_5731409_5731653,I_chr2R_5732410_5732504 chr2R + chr2R_5732410_5732504 chr2R_5732409_5732410;chr2R_5732504_5732505 chr2R_5732341_5732409;chr2R_5732505_5732561 96.04 90.91 NA 96.43 NA 90.00 100.00 100.00 95.65 NA NA 92.31 NA NA 91.67 100.00 NA NA 100.00 92.86 NA NA 90.91 NA NA 92.86 100.00 NA 90.00 NA 100.00 100.00 100.00 95.00 100.00 100.00 NA NA NA 90.00 96.43 100.00 92.31 90.00 93.33 94.12 NA 92.86 100.00 100.00 83.33 NA 100.00 100.00 100.00 100.00 92.86 92.59 K intron_retention mib2 chr2L + chr2L_19035698_19035760 chr2L_19035697_19035698;chr2L_19035760_19035761 chr2L_19035635_19035697;chr2L_19035761_19035865 25.00 NA NA NA NA NA 36.36 NA 23.08 NA NA 9.68 NA NA NA NA NA NA NA NA NA 36.84 NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG15609,I_chr2R_12898038_12898391,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12898041_12898658 chr2R_12898041_12898391;chr2R_12898482_12898658 chr2R_12898392_12898481 chr2R_12897841_12898040;chr2R_12898659_12899053 90.00 80.85 92.45 100.00 97.44 91.11 67.16 93.44 88.12 95.00 97.14 95.06 90.00 91.43 90.00 92.31 94.87 92.11 88.37 91.75 92.11 85.42 74.36 81.94 87.10 89.47 91.94 94.44 87.50 88.89 89.80 96.97 88.89 87.14 89.74 89.19 93.44 84.78 93.65 91.94 92.00 91.46 87.88 81.36 82.50 85.71 88.00 90.00 80.52 97.06 84.21 90.91 92.00 81.08 95.12 80.56 87.18 93.10 K intron_retention F_chr2R_14309059_14311473,CG12263 chr2R + chr2R_14317527_14317585 chr2R_14317526_14317527;chr2R_14317585_14317586 chr2R_14317078_14317526;chr2R_14317586_14317838 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD flr chr3L + chr3L_13406076_13406416 chr3L_13406174_13406416 chr3L_13406417_13406538;chr3L_13405928_13406075 3.29 1.92 2.90 2.02 2.66 1.68 4.32 2.82 2.62 1.75 2.93 4.46 4.52 1.20 5.13 2.07 3.76 5.13 1.70 3.63 3.77 10.68 2.19 2.26 2.96 3.29 6.10 2.05 36.00 4.21 8.66 5.47 5.98 5.28 2.35 5.36 4.55 1.49 3.47 1.54 2.55 2.70 3.23 3.60 3.89 4.40 1.54 2.26 4.68 4.55 2.60 3.29 5.26 2.99 3.32 2.16 3.68 2.78 K alternative_acceptor eas,REI_chrX_16172581_16175010,REI_chrX_16172581_16177702,RI_chrX_16173003_16173054 chrX + chrX_16172795_16175010 chrX_16172795_16174918 chrX_16172727_16172794;chrX_16175011_16175110 100.00 100.00 100.00 100.00 94.44 92.31 100.00 100.00 97.67 88.89 100.00 100.00 100.00 92.86 95.00 100.00 94.44 100.00 100.00 94.29 100.00 100.00 94.44 93.33 100.00 92.86 100.00 100.00 88.89 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 97.44 94.74 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 N jcn_only_AD I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17181974_17182126,RI_chr3R_17182422_17182532,RI_chr3R_17183087_17183245,RI_chr3R_17183087_17183726,I_chr3R_17183481_17200781,I_chr3R_17183927_17184513,I_chr3R_17183927_17185306,RI_chr3R_17184319_17184513,I_chr3R_17184319_17185084,I_chr3R_17184319_17185284,noncoding_18168,RI_chr3R_17184792_17185306,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,RI_chr3R_17189607_17189988,I_chr3R_17190098_17190207,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17181974_17182268;chr3R_17181974_17182039 chr3R_17181974_17200781 chr3R_17181929_17181973 60.44 52.38 90.00 21.62 NA NA 41.38 57.69 58.97 NA NA 66.67 NA 60.00 NA NA NA NA NA 82.93 NA 25.00 NA 73.91 NA NA 65.00 NA NA NA 34.78 64.00 NA 57.14 NA NA NA NA 72.73 80.00 57.14 48.78 NA NA NA 55.56 60.87 95.45 48.72 62.07 69.57 NA NA 65.00 NA NA 26.09 85.29 K intron_retention CG8336 chr3L + chr3L_9624239_9624292 chr3L_9624238_9624239;chr3L_9624292_9624293 chr3L_9623969_9624238;chr3L_9624293_9624895 0.00 0.00 0.00 17.39 14.29 NA 14.29 8.70 0.00 0.00 NA 7.69 NA 13.64 0.00 0.00 NA 0.00 NA 4.26 NA 7.32 12.50 0.00 0.00 0.00 24.32 19.23 8.70 0.00 0.00 6.25 0.00 0.00 4.00 10.71 5.71 0.00 7.55 0.00 0.00 2.33 0.00 0.00 0.00 4.44 0.00 0.00 0.00 12.50 0.00 NA 0.00 10.34 11.11 3.45 0.00 0.00 K alternative_acceptor Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21124374_21124442 chr2L_21124374_21124439 chr2L_21124317_21124373;chr2L_21124443_21124521 57.50 58.62 50.00 53.12 64.29 56.00 54.00 55.00 55.41 60.87 80.00 56.00 64.29 55.00 54.05 55.32 63.33 70.97 56.41 62.32 66.67 67.57 50.00 52.94 66.67 61.11 56.10 72.73 63.64 58.06 57.50 62.50 54.17 59.26 57.89 60.53 56.52 55.56 55.32 63.83 57.14 54.41 50.00 62.86 53.33 65.38 70.00 58.82 56.52 66.67 67.57 41.67 56.25 61.11 64.29 57.14 52.38 50.00 K intron_retention CG9894,RI_chr2L_2755946_2756007 chr2L + chr2L_2756171_2756244 chr2L_2756170_2756171;chr2L_2756244_2756245 chr2L_2756008_2756170;chr2L_2756245_2756663 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.43 0.48 0.41 0.33 0.00 0.00 0.84 0.35 0.22 0.00 0.00 0.33 0.00 0.00 1.14 2.15 2.82 24.76 0.00 0.00 0.00 0.54 0.24 1.18 0.00 0.00 0.00 0.00 0.49 0.80 0.67 0.43 0.00 0.76 0.21 0.00 0.37 0.70 0.71 0.76 0.00 0.00 0.00 0.31 0.00 0.00 0.92 K jcn_only_AA CG3774,I_chrX_6114220_6114292 chrX + chrX_6114220_6114347 chrX_6114220_6114292 chrX_6114120_6114219;chrX_6114348_6114392 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG17698 chr3L + chr3L_23741817_23741875 chr3L_23741817_23741871 chr3L_23741752_23741816;chr3L_23741876_23741939 94.83 97.96 92.68 94.81 93.10 97.96 94.32 94.85 95.05 NA 97.14 94.12 91.49 95.52 100.00 89.13 87.88 91.89 91.80 94.85 96.00 NA 96.15 91.67 97.22 96.77 97.78 90.48 95.45 92.00 96.72 97.14 NA 92.47 95.65 96.55 96.00 86.36 93.75 98.75 NA 92.31 90.38 94.00 100.00 95.65 90.00 NA 93.00 94.23 96.15 94.12 94.44 95.74 98.28 100.00 93.55 91.89 K intron_retention cher,I_chr3R_12943024_12948119 chr3R - chr3R_12920041_12920097 chr3R_12920040_12920041;chr3R_12920097_12920098 chr3R_12918009_12920040;chr3R_12920098_12920267 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention gammaTub23C,CG3165 chr2L + chr2L_2972920_2972976 chr2L_2972919_2972920;chr2L_2972976_2972977 chr2L_2972909_2972919;chr2L_2972977_2973107 100.00 100.00 100.00 100.00 NA 100.00 95.45 100.00 100.00 NA NA 94.74 100.00 100.00 94.12 97.30 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 NA NA NA 100.00 NA NA 100.00 100.00 NA 100.00 NA NA 90.00 NA 96.15 92.31 87.50 NA 100.00 NA NA 93.55 NA 87.50 100.00 NA NA 100.00 100.00 100.00 100.00 N intron_retention RpL17,I_chrX_6637182_6638207,snoRNA:Psi28S-3436b,snoRNA:Psi28S-3436a,snoRNA:Psi28S-1060,RI_chrX_6637182_6637528,I_chrX_6637182_6637973 chrX - chrX_6636290_6636382 chrX_6636289_6636290;chrX_6636382_6636383 chrX_6636192_6636289;chrX_6636383_6636524 78.12 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 35.71 NA NA NA NA NA 78.12 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG11266,RI_chr2L_7033019_7034764,I_chr2L_7034274_7034764,I_chr2L_7034274_7035406,RI_chr2L_7034911_7035074,I_chr2L_7051093_7051366 chr2L + chr2L_7034274_7035406;chr2L_7033019_7035074;chr2L_7033019_7035406 chr2L_7033019_7034764,chr2L_7034274_7034764;chr2L_7034911_7035074,chr2L_7034911_7035406 chr2L_7034765_7034910 chr2L_7032919_7033018;chr2L_7035407_7035506 10.59 4.44 14.81 6.67 8.00 20.83 17.95 24.39 15.79 6.38 15.00 16.39 26.92 29.41 15.62 26.67 10.53 15.62 23.08 10.39 14.29 9.33 13.64 6.52 6.38 3.03 8.11 0.00 3.90 6.25 40.48 4.17 2.37 22.73 9.30 NA 12.50 11.43 10.64 8.65 3.61 12.05 15.79 13.16 0.98 6.02 8.70 5.38 20.00 10.00 17.50 11.11 2.17 14.29 33.33 10.00 5.71 2.26 K intron_retention CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042891_5042983 chr2L_5042890_5042891;chr2L_5042983_5042984 chr2L_5042835_5042890;chr2L_5042984_5043016 50.00 52.94 55.00 45.45 NA 42.11 58.62 60.87 41.18 NA NA 60.47 NA 66.67 66.67 57.14 35.71 50.00 41.67 60.47 40.00 53.33 50.00 50.00 41.67 60.00 63.64 33.33 42.11 44.44 45.00 43.75 44.00 63.89 45.45 47.06 NA 50.00 63.64 35.00 50.00 70.37 52.94 55.56 52.63 40.00 54.55 55.00 55.81 36.36 50.00 38.46 NA 53.85 50.00 56.25 72.73 48.15 K jcn_only_AA CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,RI_chr2L_126228_126309 chr2L - chr2L_117760_117819 chr2L_117776_117819 chr2L_117820_117887;chr2L_117691_117759 3.37 2.49 3.07 6.88 4.44 7.03 5.67 4.37 3.93 2.83 2.24 3.89 4.55 1.48 3.39 6.38 3.88 3.11 4.79 5.26 3.25 1.90 3.37 3.38 2.16 7.08 2.29 3.18 2.67 3.43 4.32 1.89 2.86 1.49 3.74 4.44 1.87 1.61 2.35 4.29 8.00 4.23 3.21 3.85 2.73 1.73 2.55 3.64 5.49 4.26 4.05 2.16 0.00 5.35 1.95 2.40 2.56 1.30 K intron_retention noncoding_5362,snoRNA:Me28S-G3255a,CG8777,RI_chr2R_4989921_4989993,Vang chr2R + chr2R_4983464_4983654 chr2R_4983463_4983464;chr2R_4983654_4983655 chr2R_4983429_4983463;chr2R_4983655_4983707 0.00 6.06 0.00 0.00 NA 0.00 5.71 0.00 0.00 0.00 NA 1.72 6.67 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 NA 1.12 0.00 5.13 0.00 3.39 20.00 0.00 0.00 0.00 8.33 0.00 2.22 9.09 25.00 0.00 3.23 4.65 3.70 0.00 5.77 0.00 4.65 15.38 2.13 0.00 NA 0.00 0.00 1.39 0.00 1.89 0.00 0.00 0.00 1.06 2.86 K jcn_only_AD Lnk,RI_chr3R_21714780_21715376 chr3R + chr3R_21714788_21715376;chr3R_21714614_21715376 chr3R_21714419_21715376 chr3R_21715377_21715476;chr3R_21714271_21714418 28.57 26.42 29.17 23.33 23.91 23.08 32.47 21.79 28.46 54.17 12.50 24.18 19.51 28.26 36.36 25.00 20.41 35.29 30.77 40.98 14.71 37.14 38.57 22.97 28.57 27.27 47.14 43.18 47.06 29.41 42.86 34.38 23.53 29.58 21.21 20.45 46.55 45.83 50.98 29.27 14.63 24.18 25.00 42.00 36.00 15.09 51.85 22.22 22.81 27.27 39.24 26.67 47.22 42.86 22.41 45.45 40.62 16.98 K jcn_only_AA Idh,I_chr3L_8351006_8351949,I_chr3L_8351036_8351655 chr3L - chr3L_8351006_8351655 chr3L_8351036_8351655 chr3L_8351656_8351715;chr3L_8350936_8351005 2.86 3.51 0.00 0.00 6.90 0.00 5.26 1.79 3.45 20.00 2.86 3.19 0.00 4.35 2.44 0.00 NA 6.90 0.00 5.26 0.00 7.14 1.69 1.82 3.77 0.00 1.79 5.00 3.33 2.78 NA 0.00 2.00 2.04 0.00 6.12 1.64 0.00 0.00 0.00 8.00 2.60 0.00 2.94 3.12 2.38 3.03 5.88 8.47 6.67 3.51 3.03 7.32 3.77 2.50 4.88 1.45 4.55 K jcn_only_AD CG9821,I_chr3R_4644986_4645248,I_chr3R_4644986_4645577,I_chr3R_4644986_4645648,I_chr3R_4644986_4646263,RI_chr3R_4644986_4646264,RI_chr3R_4645903_4646033 chr3R - chr3R_4644986_4645248;chr3R_4644986_4646033;chr3R_4644986_4645649 chr3R_4644986_4645577 chr3R_4644886_4644985;chr3R_4646034_4646133 0.00 0.00 0.00 0.22 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.35 0.00 0.00 0.42 0.00 0.18 1.12 3.36 0.00 0.00 0.00 0.40 0.00 1.09 0.62 0.00 0.00 0.00 2.26 0.00 0.48 0.00 0.00 0.00 0.60 0.72 0.00 0.00 0.00 0.00 0.00 0.81 1.52 0.00 0.00 0.00 0.35 0.00 0.00 2.00 0.00 0.00 0.00 0.00 K mutually_exclusive eIF5B,I_chr3L_3429084_3443457,I_chr3L_3432366_3445364 chr3L - chr3L_3429084_3443457,chr3L_3443566_3445364 chr3L_3429084_3432203,chr3L_3432366_3445364 chr3L_3443458_3443565 chr3L_3432204_3432365 chr3L_3428984_3429083;chr3L_3445365_3445464 90.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG11006,F_chr3L_12799159_12799339 chr3L + chr3L_12804689_12804777;chr3L_12804689_12804747 chr3L_12804689_12804774 chr3L_12803828_12804688;chr3L_12804778_12804986 2.63 0.00 0.00 0.00 0.00 7.14 8.70 0.00 2.78 0.00 7.14 11.11 0.00 0.00 0.00 4.55 0.00 13.33 10.53 5.13 0.00 3.03 8.00 0.00 0.00 0.00 0.00 0.00 8.33 3.70 15.00 4.55 3.85 0.00 0.00 5.88 8.82 0.00 2.63 5.41 5.56 0.00 0.00 6.45 0.00 8.00 8.70 0.00 0.00 5.41 4.00 0.00 0.00 16.67 12.00 0.00 0.00 2.63 K alternative_donor CG7177 chr3L - chr3L_21547281_21547480;chr3L_21547281_21547665 chr3L_21547281_21547653 chr3L_21547125_21547280;chr3L_21547666_21547994 66.67 NA 44.44 70.59 71.43 80.00 72.73 60.00 73.91 50.00 63.64 78.26 75.00 70.00 71.43 56.25 77.78 66.67 60.00 68.00 40.00 75.00 64.29 60.00 75.00 80.00 50.00 45.45 57.89 44.44 66.67 NA 50.00 83.33 85.71 54.55 57.14 50.00 55.56 56.25 NA 70.00 75.00 66.67 NA 75.00 66.67 73.68 60.00 NA 72.73 NA NA NA 64.29 NA NA 57.14 K intron_retention CG12163,CG33293,I_chr3R_1068862_1077145,RI_chr3R_1069977_1077139 chr3R - chr3R_1065342_1077145 chr3R_1065341_1065342;chr3R_1077145_1077146 chr3R_1065214_1065341;chr3R_1077146_1077239 4.93 4.21 6.55 4.81 6.25 9.95 8.76 4.37 7.37 6.08 4.74 7.65 7.36 7.37 7.34 4.93 6.85 5.75 5.22 4.21 2.69 5.39 4.46 4.35 6.22 4.83 4.65 3.03 4.13 4.20 5.86 0.63 3.42 6.75 9.90 4.29 5.96 6.72 5.11 4.91 1.37 6.64 8.46 3.17 0.61 0.94 0.73 5.22 6.83 1.69 6.08 6.88 1.64 1.73 7.59 1.90 0.52 1.36 K alternative_acceptor eIF4G,I_chr4_948813_950447 chr4 - chr4_950743_951137 chr4_950758_951137 chr4_951138_951213;chr4_950706_950742 66.67 50.00 69.23 75.51 61.54 91.67 38.57 66.67 67.27 NA 64.71 66.67 84.00 54.17 63.64 71.15 50.00 91.67 50.00 62.50 72.73 52.38 66.67 81.25 83.33 75.00 64.71 63.64 NA NA 71.43 NA NA 78.79 75.00 61.11 NA 50.00 NA 65.00 NA 80.56 75.00 80.00 NA NA NA NA 76.32 NA 77.27 66.67 NA NA 62.50 NA NA 62.50 K intron_retention CG8677 chr2L + chr2L_21230038_21230090 chr2L_21230037_21230038;chr2L_21230090_21230091 chr2L_21228459_21230037;chr2L_21230091_21230194 2.86 2.38 5.00 8.00 9.09 5.56 0.00 4.76 3.70 0.00 0.00 1.52 10.53 0.00 9.30 0.00 0.00 2.86 2.50 4.44 8.82 3.36 3.41 2.47 0.00 3.03 6.35 11.86 7.27 7.32 0.00 0.00 3.12 8.00 3.77 1.67 1.90 0.00 0.00 0.00 4.92 3.23 9.38 0.00 0.00 4.65 0.00 1.23 7.46 1.30 3.28 0.00 0.00 3.28 0.00 5.88 0.00 0.00 K jcn_only_AA ced-6,I_chr2R_5322831_5322898,I_chr2R_5324717_5324924,I_chr2R_5328640_5328696 chr2R - chr2R_5322831_5322898 chr2R_5322840_5322898 chr2R_5322899_5322998;chr2R_5322765_5322830 99.35 98.69 98.96 98.45 98.84 98.93 99.34 99.11 99.50 99.18 98.80 99.61 98.84 100.00 99.80 99.40 99.23 99.75 99.80 99.73 100.00 98.79 99.46 99.62 98.35 99.61 99.02 98.07 98.70 99.16 99.03 99.08 99.47 98.04 99.75 99.73 99.58 99.24 99.35 99.59 99.38 99.65 99.73 99.34 100.00 99.78 99.81 98.85 99.52 99.61 99.34 99.62 98.90 99.27 99.03 99.60 99.40 98.82 K intron_retention CG1826,EF_chrX_10666660_10666923 chrX + chrX_10663327_10663380 chrX_10663326_10663327;chrX_10663380_10663381 chrX_10662537_10663326;chrX_10663381_10664019 0.00 0.00 NA 0.00 NA NA 0.00 0.00 5.56 NA NA 6.90 NA NA NA 5.88 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 4.35 0.00 0.00 0.00 0.00 6.67 NA NA NA NA 0.00 0.00 0.00 K alternative_donor Eph,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_640804_640879;chr4_640734_640879 chr4_640676_640879 chr4_640880_640963;chr4_640576_640675 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 3.85 3.45 2.13 5.88 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 5.88 3.57 7.69 8.33 0.00 5.56 0.00 0.00 7.14 0.00 0.00 0.00 2.27 0.00 0.00 5.88 0.00 5.88 7.14 3.51 0.00 3.70 6.67 9.09 6.25 0.00 0.00 0.00 0.00 K alternative_donor I_chr2L_6323791_6325172,Gef26,I_chr2L_6330719_6330770 chr2L + chr2L_6330564_6330770 chr2L_6330697_6330770 chr2L_6330771_6330832;chr2L_6330244_6330563 16.67 8.33 NA NA NA NA NA NA 12.00 NA NA NA NA NA NA NA NA 44.44 NA 18.18 NA 43.33 NA 16.67 NA NA 7.69 NA NA NA 20.00 NA NA 23.08 NA NA 14.29 9.09 13.04 22.22 NA 18.75 42.86 16.67 5.56 20.00 NA 18.18 8.33 NA NA NA 6.67 NA NA NA 9.52 NA K cassette CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525393_1527189 chr3L_1525393_1526659;chr3L_1526732_1527189 chr3L_1526660_1526731 chr3L_1525293_1525392;chr3L_1527190_1527240 29.91 NA NA NA NA NA NA NA NA NA NA 93.33 NA NA NA NA NA NA NA 44.44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.38 NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Psa,I_chr3L_1518053_1518213 chr3L + chr3L_1518797_1519946 chr3L_1518796_1518797;chr3L_1519946_1519947 chr3L_1518390_1518796;chr3L_1519947_1520763 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.39 0.00 0.00 0.66 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 1.04 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG3499,I_chr2R_18772777_18772819 chr2R - chr2R_18772767_18772819 chr2R_18772777_18772819 chr2R_18772820_18772879;chr2R_18772677_18772766 0.00 0.00 0.00 1.56 0.00 1.49 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.58 0.00 1.23 0.00 1.47 0.00 0.00 0.79 1.09 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 1.10 0.93 0.00 0.00 0.65 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 K jcn_only_AA CG31715,I_chr2L_10341933_10342151,I_chr2L_10341933_10342155 chr2L + chr2L_10341933_10342149;chr2L_10341933_10342151 chr2L_10341933_10342155 chr2L_10341833_10341932;chr2L_10342156_10342233 0.76 0.00 0.00 1.42 0.00 1.16 1.40 1.27 0.38 0.00 1.19 0.52 1.75 0.79 1.33 0.53 2.14 1.18 0.65 1.05 1.22 0.00 0.00 0.00 0.00 2.31 0.00 0.00 4.65 0.00 0.76 1.06 1.37 1.70 0.00 1.56 0.00 0.00 0.00 1.87 1.67 0.86 0.00 0.00 0.00 1.55 1.10 3.64 1.75 0.00 0.00 1.61 0.00 2.17 0.70 0.00 1.16 0.67 K alternative_donor CG4365 chr3L + chr3L_20791960_20792242;chr3L_20792089_20792242;chr3L_20792100_20792242;chr3L_20792077_20792242 chr3L_20791819_20792242 chr3L_20792243_20793181;chr3L_20791802_20791818 73.33 68.75 73.68 77.42 77.78 71.43 80.00 82.76 77.55 81.82 88.00 82.35 77.78 85.71 69.57 60.87 81.25 73.68 80.95 83.02 80.95 83.33 52.94 68.42 75.00 60.00 33.33 55.56 16.67 58.33 60.00 44.44 68.75 78.57 81.82 62.50 66.67 57.14 64.71 66.67 66.67 75.68 81.82 64.29 43.75 66.67 79.31 73.33 75.68 70.00 63.16 77.78 70.37 50.00 76.19 63.64 77.50 77.27 K jcn_only_AD Gcn2,Gprk2 chr3R + chr3R_27222630_27222707 chr3R_27222636_27222707 chr3R_27222708_27223335;chr3R_27222124_27222629 2.11 2.59 0.00 4.17 4.71 1.20 2.44 0.77 2.17 1.56 0.00 1.41 1.22 1.28 9.68 0.99 4.11 2.53 0.00 2.70 3.12 0.00 2.11 0.98 1.09 3.70 3.16 4.51 4.20 2.44 2.75 0.00 2.63 2.61 3.80 0.81 3.08 3.45 0.90 0.00 0.00 1.05 1.32 1.22 2.56 0.00 4.92 5.26 2.17 2.00 0.67 2.00 2.94 0.00 1.94 2.00 2.56 5.56 K intron_retention Amun,I_chrX_11607839_11608272,I_chrX_11607842_11608105,I_chrX_11607842_11608125,RI_chrX_11607842_11608272 chrX - chrX_11607842_11608590 chrX_11607841_11607842;chrX_11608590_11608591 chrX_11607788_11607841;chrX_11608591_11608810 42.86 45.00 42.86 37.50 38.10 45.00 41.67 50.00 24.07 NA 50.00 50.00 38.46 50.00 43.48 50.00 58.82 61.11 40.91 36.51 47.62 31.91 58.33 36.36 46.15 71.43 57.14 NA 29.27 21.43 39.29 26.92 30.00 41.67 32.00 46.43 42.86 NA 66.67 36.76 41.67 46.34 50.00 16.67 20.00 50.00 54.55 23.89 48.72 33.33 46.67 NA 37.50 NA 23.08 56.25 46.67 24.43 K cassette Rtnl1,I_chr2L_4994995_5006383,RE_chr2L_4994997_5008180,I_chr2L_4999386_5000201,I_chr2L_5027222_5028118 chr2L - chr2L_4994995_5008180;chr2L_4994995_5004613 chr2L_4994995_5004171;chr2L_5004208_5008180,chr2L_5004208_5004613 chr2L_5004172_5004207 chr2L_4994897_4994994;chr2L_5008181_5008280 11.18 13.13 10.92 19.05 18.89 17.70 8.40 8.08 14.08 12.50 7.23 18.40 17.98 13.27 10.29 11.90 15.60 16.96 7.44 22.73 7.81 17.24 7.34 6.90 6.94 8.33 9.52 20.90 19.61 10.23 9.29 13.51 11.54 11.18 15.79 0.93 10.29 11.36 6.96 8.79 5.05 13.24 10.58 14.66 18.99 8.94 16.67 13.13 15.62 11.11 9.23 10.94 20.63 9.30 12.90 9.78 7.07 9.17 K intron_retention CG32016,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_978750_978914 chr4_978749_978750;chr4_978914_978915 chr4_978632_978749;chr4_978915_978920 85.00 NA NA 90.00 NA NA 93.33 78.95 66.67 NA NA 77.78 NA 100.00 NA 85.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 68.75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 94.12 NA NA NA NA NA NA NA NA NA K alternative_donor RpL15 chr3LHet + chr3LHet_2398018_2398127;chr3LHet_2397859_2398127;chr3LHet_2397925_2398127;chr3LHet_2397992_2398127;chr3LHet_2397841_2398127;chr3LHet_2398002_2398127;chr3LHet_2397820_2398127;chr3LHet_2398053_2398127 chr3LHet_2398060_2398127 chr3LHet_2398128_2398454;chr3LHet_2397802_2397819 11.54 14.29 13.04 8.30 13.33 13.33 22.22 5.82 21.88 16.67 13.64 21.43 22.22 18.52 3.91 27.59 4.94 10.00 8.33 24.19 16.67 3.62 18.52 21.74 22.22 3.12 21.43 6.42 3.36 3.75 13.21 0.87 1.83 5.51 9.52 5.71 16.67 15.38 8.33 0.95 2.94 6.35 12.50 0.44 1.95 3.68 16.67 2.14 10.75 26.09 13.04 11.76 0.99 21.05 4.82 11.54 13.33 1.82 K cassette Pk17E,I_chrX_18685493_18699326 chrX + chrX_18685493_18699326 chrX_18685493_18687791;chrX_18687881_18699326 chrX_18687792_18687880 chrX_18685393_18685492;chrX_18699327_18699426 100.00 92.86 90.91 85.71 100.00 100.00 NA 85.71 100.00 100.00 NA 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.48 NA 83.33 92.86 90.00 NA NA 87.50 NA 71.43 100.00 87.50 100.00 100.00 100.00 87.50 100.00 100.00 100.00 93.75 85.71 NA 100.00 NA 85.71 94.44 92.31 91.67 88.89 92.31 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 92.31 K alternative_donor IP3K2,I_chrX_13216481_13219804 chrX + chrX_13215388_13219804 chrX_13215512_13219804 chrX_13219805_13219869;chrX_13215310_13215387 60.00 NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA NA 60.00 NA NA 100.00 45.45 NA NA 66.67 NA 50.00 NA NA NA NA NA 44.44 57.14 NA NA NA NA NA NA NA NA 85.71 K intron_retention RabX4 chr3R - chr3R_20653692_20653745 chr3R_20653691_20653692;chr3R_20653745_20653746 chr3R_20653558_20653691;chr3R_20653746_20653766 100.00 NA NA 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA 96.00 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA PRL-1,RI_chr2L_16249092_16250080,I_chr2L_16250028_16250080 chr2L - chr2L_16250028_16250080;chr2L_16249722_16250080;chr2L_16249092_16250080 chr2L_16249707_16250080 chr2L_16250081_16250158;chr2L_16248992_16249091 97.91 97.91 99.26 97.59 100.00 98.14 97.61 98.29 97.93 97.27 98.63 97.83 97.25 99.37 98.30 98.17 98.51 98.19 98.65 97.89 99.35 95.27 97.71 98.90 97.31 98.98 97.40 96.61 96.72 93.16 97.09 98.67 95.74 98.01 97.06 98.68 98.40 98.09 98.73 96.00 94.67 97.63 97.21 98.51 99.00 96.40 96.68 97.44 96.75 96.26 96.52 97.33 98.29 98.20 98.34 99.02 98.48 94.85 K alternative_acceptor CG3714,I_chr2L_4190825_4191774,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,I_chr2L_4196780_4197306,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4196780_4197964 chr2L_4196815_4197964 chr2L_4197965_4198000;chr2L_4196715_4196779 20.00 NA NA 21.43 NA NA 38.46 25.00 9.09 NA NA 20.00 NA NA NA 19.35 NA NA 14.29 13.33 NA NA 23.08 NA NA NA NA NA NA NA 10.53 NA NA 14.29 NA 85.71 NA NA NA 22.22 6.25 35.71 NA 25.00 NA NA NA 0.00 25.00 NA NA NA NA NA NA NA NA 0.00 K intron_retention CG16971,I_chr3L_225856_225909,I_chr3L_225919_225983,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_225919_226219 chr3L_225918_225919;chr3L_226219_226220 chr3L_225910_225918;chr3L_226220_226256 99.56 99.53 99.14 100.00 99.56 99.29 99.77 100.00 99.49 99.32 100.00 99.60 98.50 99.38 100.00 99.73 99.29 98.94 99.70 99.56 100.00 99.50 99.09 99.62 99.61 99.41 99.56 99.45 99.18 99.38 99.72 100.00 99.28 98.92 100.00 100.00 99.60 99.49 99.71 98.95 100.00 99.72 99.61 99.70 99.34 99.56 99.28 99.54 99.58 99.16 100.00 98.67 99.34 98.80 100.00 100.00 98.96 99.65 K intron_retention CG5059,I_chr3L_20509233_20511440,I_chr3L_20509985_20510360 chr3L - chr3L_20509233_20512316 chr3L_20509232_20509233;chr3L_20512316_20512317 chr3L_20509133_20509232;chr3L_20512317_20512503 81.24 94.12 84.00 91.67 76.47 86.96 91.84 91.30 88.37 NA 80.00 84.78 85.71 91.67 82.14 81.08 84.62 95.45 86.21 86.15 91.67 32.14 77.78 78.95 80.00 87.50 94.74 70.00 43.75 60.00 85.71 63.64 75.00 81.40 78.57 76.92 69.23 86.67 87.50 75.86 70.00 78.26 93.75 69.57 90.00 68.75 88.46 76.92 91.67 69.57 80.00 77.78 63.64 66.67 88.46 92.86 80.95 63.64 N intron_retention CG17018,R_chr2L_22312023_22363414,CEI_chr2L_22325847_22356902 chr2L + chr2L_22354723_22354811 chr2L_22354722_22354723;chr2L_22354811_22354812 chr2L_22354466_22354722;chr2L_22354812_22354828 100.00 100.00 100.00 100.00 100.00 100.00 92.97 94.51 94.57 100.00 82.00 100.00 89.66 100.00 100.00 94.55 100.00 100.00 100.00 95.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.30 92.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_acceptor JhI-26,I_chr2R_12177114_12177266 chr2R + chr2R_12178257_12178432;chr2R_12178257_12178308 chr2R_12178257_12178348 chr2R_12177457_12178256;chr2R_12178433_12178520 0.69 0.00 0.00 1.15 1.32 1.52 1.20 0.74 0.51 1.92 0.00 0.70 1.72 1.52 1.12 1.11 0.00 0.00 1.14 0.00 0.00 5.56 0.00 0.83 1.03 0.00 0.70 0.62 0.58 1.15 0.69 0.90 0.00 0.00 1.37 0.88 0.00 0.00 0.64 0.62 0.62 0.71 0.00 0.55 0.00 0.70 0.81 0.00 0.00 0.68 0.76 1.20 0.00 1.06 1.15 0.95 0.53 0.00 K intron_retention CG5196,pps chr3R + chr3R_8236703_8236756 chr3R_8236702_8236703;chr3R_8236756_8236757 chr3R_8236182_8236702;chr3R_8236757_8237365 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG2219,noncoding_20558,RI_chr4_202143_202194 chr4 - chr4_202143_202194 chr4_202142_202143;chr4_202194_202195 chr4_202043_202142;chr4_202195_202294 0.00 0.00 0.00 23.33 0.00 0.00 8.82 0.00 2.30 NA 0.00 3.33 1.85 0.00 0.00 2.41 0.00 0.00 5.26 1.79 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.93 0.00 0.00 2.78 0.00 2.27 0.00 0.00 0.00 5.26 1.59 0.00 0.00 N cassette betaTub97EF chr3R - chr3R_23795273_23798642;chr3R_23794914_23798642 chr3R_23795273_23795381,chr3R_23794914_23795381;chr3R_23795550_23798642 chr3R_23795382_23795549 chr3R_23794649_23794913;chr3R_23798643_23798872 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.50 100.00 99.64 100.00 100.00 100.00 100.00 98.48 100.00 100.00 100.00 99.40 100.00 99.39 100.00 99.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.55 99.59 100.00 100.00 100.00 100.00 K cassette eIF-5A,I_chr2R_19945430_19946454,I_chr2R_19945576_19946006,I_chr2R_19945723_19946006,I_chr2R_19945783_19946006,I_chr2R_19945852_19946006,I_chr2R_19945875_19946006,I_chr2R_19945921_19946006,I_chr2R_19946177_19946252,I_chr2R_19946177_19946255,I_chr2R_19946177_19946454,E_chr2R_19946177_19946508,I_chr2R_19946186_19946252,I_chr2R_19946186_19946255,I_chr2R_19946186_19946454,I_chr2R_19946186_19946508,I_chr2R_19946299_19946454,I_chr2R_19946657_19946733,I_chr2R_19948517_19948682 chr2R + chr2R_19945430_19946454 chr2R_19945430_19946006;chr2R_19946215_19946454 chr2R_19946007_19946214 chr2R_19945330_19945429;chr2R_19946455_19946554 99.97 99.95 100.00 99.85 100.00 100.00 99.97 99.98 99.98 100.00 100.00 99.98 100.00 99.96 99.97 99.94 99.94 99.92 100.00 100.00 100.00 99.92 100.00 100.00 100.00 99.96 99.96 99.93 99.96 100.00 100.00 99.95 99.96 99.95 100.00 100.00 100.00 99.93 99.96 99.97 100.00 99.96 100.00 100.00 99.97 99.97 100.00 99.97 99.98 99.94 99.95 99.94 100.00 99.95 100.00 99.96 99.96 100.00 K alternative_donor yps,I_chr3L_12115255_12115627,RI_chr3L_12115255_12115645,I_chr3L_12115255_12115669,I_chr3L_12115877_12115936 chr3L - chr3L_12115255_12115775 chr3L_12115255_12115645 chr3L_12115155_12115254;chr3L_12115776_12115867 6.09 4.89 5.56 2.94 5.04 3.68 7.02 7.17 6.10 6.45 10.00 3.67 6.67 8.89 3.66 6.56 5.13 6.29 5.04 3.76 4.22 18.09 5.60 4.59 7.48 5.73 7.10 14.29 22.67 4.61 5.00 6.53 5.81 6.09 4.72 5.36 6.17 7.36 8.21 7.42 7.73 5.74 6.72 8.37 4.10 8.26 6.74 11.71 5.46 4.65 7.43 7.91 4.44 3.24 4.12 4.69 4.59 6.56 K jcn_only_AA CG16838,I_chr3L_16125390_16125510 chr3L + chr3L_16125390_16125588;chr3L_16125390_16125639 chr3L_16125390_16125485 chr3L_16125290_16125389;chr3L_16125640_16126338 14.32 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.64 NA NA NA NA NA NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA 6.45 NA 21.74 NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA 19.05 K alternative_donor CG2316,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_213991,RI_chr4_210688_214450 chr4 - chr4_205241_205298 chr4_205241_205295 chr4_205175_205240;chr4_205299_205344 94.74 86.84 97.06 96.08 95.65 95.24 94.12 94.25 96.23 100.00 93.10 93.85 96.97 92.86 92.11 95.45 97.44 96.43 92.98 89.39 96.00 92.31 95.65 100.00 93.75 96.00 94.44 100.00 100.00 95.24 93.75 95.65 93.33 88.41 92.31 92.86 100.00 94.44 94.74 92.31 88.24 94.52 97.14 95.83 100.00 100.00 95.65 91.67 92.63 96.97 93.02 87.50 87.50 100.00 97.50 92.86 94.12 96.55 K cassette baz,I_chrX_17055225_17069379 chrX + chrX_17087069_17087931 chrX_17087069_17087345;chrX_17087451_17087931 chrX_17087346_17087450 chrX_17086564_17087068;chrX_17087932_17089266 16.34 5.56 14.29 26.67 12.50 12.50 NA 16.67 11.76 15.00 13.33 9.09 NA NA 13.33 30.77 14.29 NA 14.29 13.16 25.00 27.27 12.90 20.00 30.00 NA 14.29 26.32 NA 40.00 7.69 27.27 25.00 23.53 20.00 25.00 14.29 16.00 12.20 25.00 NA 20.83 27.27 13.04 20.00 NA 14.29 NA 13.64 10.00 20.00 23.08 NA 33.33 20.00 NA NA NA K jcn_only_AA CG13747 chr2R + chr2R_4906154_4906220 chr2R_4906154_4906206 chr2R_4906003_4906153;chr2R_4906221_4906517 97.62 NA NA 100.00 NA NA NA 100.00 97.06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.48 NA 100.00 NA 97.62 NA NA NA NA NA NA 96.00 NA NA NA NA 100.00 96.43 NA N intron_retention Tsp42Ed chr2R - chr2R_2898360_2898498 chr2R_2898359_2898360;chr2R_2898498_2898499 chr2R_2898168_2898359;chr2R_2898499_2898555 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 84.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Mct1 chrX + chrX_2089096_2092664;chrX_2089073_2092664 chrX_2088826_2092664 chrX_2092665_2092972;chrX_2088634_2088825 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA 4.35 NA K cassette PH4alphaEFB,I_chr3R_26305150_26309614 chr3R + chr3R_26305150_26309614 chr3R_26305150_26305314;chr3R_26305503_26309614 chr3R_26305315_26305502 chr3R_26305050_26305149;chr3R_26309615_26309714 100.00 100.00 100.00 97.00 100.00 100.00 100.00 99.72 99.64 99.50 99.52 99.80 100.00 99.48 100.00 100.00 100.00 100.00 100.00 99.82 100.00 99.25 99.46 99.75 99.47 99.50 100.00 100.00 100.00 100.00 99.60 99.64 100.00 100.00 99.50 100.00 99.79 100.00 99.78 99.58 100.00 100.00 100.00 99.73 100.00 99.75 99.60 99.50 99.76 99.68 99.73 100.00 100.00 100.00 100.00 99.67 100.00 99.79 K intron_retention crol,I_chr2L_11799403_11802904 chr2L - chr2L_11806158_11809125 chr2L_11806157_11806158;chr2L_11809125_11809126 chr2L_11806048_11806157;chr2L_11809126_11809399 0.00 0.00 0.00 2.13 0.00 0.00 6.82 1.23 3.03 0.00 0.00 5.56 2.94 0.00 6.00 0.00 0.00 2.70 0.00 2.13 0.00 10.00 1.54 0.00 0.00 0.00 8.51 18.18 13.89 0.00 1.92 0.00 1.89 0.00 0.00 0.00 1.39 0.00 5.56 0.00 0.00 0.98 0.00 3.45 0.00 3.45 0.00 1.75 2.44 0.00 0.00 2.38 0.00 0.00 1.92 0.00 0.00 0.00 K intron_retention Atg18,I_chr3L_8182683_8182941 chr3L + chr3L_8181681_8182401 chr3L_8181680_8181681;chr3L_8182401_8182402 chr3L_8180913_8181680;chr3L_8182402_8182545 11.63 8.00 11.48 22.45 5.13 5.17 6.98 14.86 16.16 6.67 4.76 5.66 17.95 11.63 15.15 19.30 13.16 9.52 8.00 10.74 12.82 20.88 11.76 12.00 18.75 19.35 12.70 24.32 16.67 12.07 20.00 13.21 8.70 17.28 5.00 30.00 8.82 8.82 7.53 15.84 21.62 11.21 11.63 17.14 9.68 7.27 4.41 20.00 9.68 8.06 8.82 13.64 7.27 9.80 17.86 9.80 3.37 12.33 K intron_retention CG4365 chr3L + chr3L_20791819_20792242 chr3L_20791818_20791819;chr3L_20792242_20792243 chr3L_20791802_20791818;chr3L_20792243_20793181 14.72 NA 6.67 25.00 NA NA 20.00 7.69 15.56 NA 0.00 15.15 NA 14.29 20.00 36.36 7.14 12.50 19.05 10.20 5.56 23.08 NA NA NA 25.00 NA 28.57 NA NA 25.00 NA NA 15.38 NA NA NA NA NA 14.29 NA 17.65 10.00 NA NA 20.00 0.00 NA 12.50 6.67 NA NA 17.39 NA 11.11 17.65 6.06 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389272_2395659 chrX_2389272_2392054;chrX_2392149_2392515;chrX_2392665_2393243;chrX_2393712_2395659 chrX_2392055_2392148;chrX_2392516_2392664;chrX_2393244_2393711 chrX_2389172_2389271;chrX_2395660_2395759 41.66 NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CHKov1,CHKov2 chr3R - chr3R_21154725_21154782 chr3R_21154724_21154725;chr3R_21154782_21154783 chr3R_21154645_21154724;chr3R_21154783_21155024 7.81 6.35 4.11 10.81 7.81 8.33 13.01 4.58 4.76 9.23 7.27 5.59 5.83 6.02 10.00 9.77 9.52 15.19 6.74 6.43 6.45 9.57 6.72 5.43 8.43 10.00 10.20 12.59 42.86 11.25 13.33 3.33 9.03 5.88 7.78 26.25 6.00 4.00 9.20 6.25 12.77 6.41 7.46 8.14 3.57 7.32 10.26 10.38 5.63 8.47 8.82 8.33 11.43 8.33 7.41 7.41 6.90 7.41 K jcn_only_AD RI_chrX_7172561_7252693,CG1677,I_chrX_7178792_7252693,unc-119,I_chrX_7183298_7183371,RI_chrX_7183298_7184274 chrX - chrX_7183298_7183538 chrX_7183298_7183371 chrX_7183198_7183297;chrX_7183539_7183711 11.43 NA 13.04 6.45 NA 19.23 13.79 3.03 6.98 NA NA 11.11 19.05 NA NA 16.13 NA NA 3.70 8.70 NA 12.50 5.88 12.50 NA 3.57 13.33 NA NA NA 13.64 NA NA 11.76 27.27 8.70 10.00 4.35 8.33 20.51 NA 20.00 25.00 NA 15.00 17.50 13.89 NA 9.09 10.00 3.85 NA NA 8.00 8.70 8.33 14.29 NA K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,RI_chr3R_27801288_27801517,I_chr3R_27801288_27801596 chr3R - chr3R_27784850_27805244 chr3R_27784850_27801169;chr3R_27801288_27801517;chr3R_27801688_27805244 chr3R_27801170_27801287;chr3R_27801518_27801687 chr3R_27784757_27784849;chr3R_27805245_27805341 66.67 75.00 75.00 90.91 NA NA 37.50 53.85 63.64 NA 75.00 84.62 75.00 66.67 60.00 63.64 NA 57.14 62.50 66.67 50.00 NA NA NA NA 57.14 33.33 NA NA NA 75.00 NA NA 77.78 NA NA NA NA NA 60.00 NA 58.33 75.00 NA NA 100.00 NA 66.67 63.64 NA 80.00 75.00 NA NA 62.50 NA NA 71.43 K intron_retention CG31710 chr2L - chr2L_9703179_9703267 chr2L_9703178_9703179;chr2L_9703267_9703268 chr2L_9702964_9703178;chr2L_9703268_9703605 8.01 NA 0.00 4.35 NA 25.00 17.39 16.00 0.00 NA NA 0.00 NA 14.29 12.50 12.50 6.67 NA 0.00 21.43 NA NA NA 11.76 NA NA NA NA 20.00 NA NA NA 6.67 9.09 NA NA NA NA NA 0.00 NA 12.00 7.69 NA 0.00 7.69 0.00 15.79 15.38 5.26 NA NA 0.00 NA NA 0.00 10.00 8.33 K intron_retention Rae1 chr2R - chr2R_17546981_17547029 chr2R_17546980_17546981;chr2R_17547029_17547030 chr2R_17546206_17546980;chr2R_17547030_17547542 0.00 0.00 0.00 3.19 1.09 0.00 2.06 2.35 0.59 0.00 0.00 1.52 0.00 0.00 3.49 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 3.92 3.37 0.00 0.00 0.00 0.00 0.00 3.19 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31431 chr3R + chr3R_17698248_17698309 chr3R_17698247_17698248;chr3R_17698309_17698310 chr3R_17698132_17698247;chr3R_17698310_17698377 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 4.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 1.06 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 K intron_retention Myb,RI_chrX_15752571_15753225 chrX - chrX_15749759_15749822 chrX_15749758_15749759;chrX_15749822_15749823 chrX_15748872_15749758;chrX_15749823_15751578 0.00 0.00 0.99 1.27 0.00 0.00 0.00 0.00 1.41 0.00 0.00 1.85 2.35 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.02 2.27 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.95 1.25 0.00 1.12 1.12 3.61 1.12 2.03 0.00 0.00 0.00 0.00 1.96 0.00 0.00 1.37 0.00 K alternative_donor CG1354,I_chrX_9672972_9673084,I_chrX_9673026_9673084 chrX + chrX_9673026_9673084;chrX_9672947_9673084;chrX_9672972_9673084 chrX_9672967_9673084 chrX_9673085_9673184;chrX_9672926_9672946 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 2.38 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 1.56 5.88 0.00 0.00 2.70 0.00 0.00 0.00 K jcn_only_AA hppy,I_chr2R_15066378_15066915,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15066378_15066881;chr2R_15066378_15066915 chr2R_15066378_15067003 chr2R_15066360_15066377;chr2R_15067004_15067015 72.73 57.69 NA NA NA NA 58.33 45.45 69.05 NA NA 74.07 NA NA NA 81.82 NA NA 86.96 85.00 NA 78.95 72.97 56.52 68.18 NA 45.16 90.91 96.43 65.38 NA NA NA 53.57 NA 72.73 72.73 82.61 NA 79.25 NA 73.91 NA 84.21 NA NA 72.73 97.14 85.00 NA 65.91 61.54 NA NA 69.57 NA NA NA K intron_retention hts,I_chr2R_15311185_15312327,I_chr2R_15311303_15311544,I_chr2R_15311303_15312026 chr2R - chr2R_15306111_15311098 chr2R_15306110_15306111;chr2R_15311098_15311099 chr2R_15306062_15306110;chr2R_15311099_15311184 3.33 3.85 8.33 14.71 0.00 0.00 10.26 6.52 2.90 NA 0.00 3.49 2.94 2.78 5.00 7.69 0.00 7.41 5.41 2.90 10.53 3.23 NA 0.00 NA 9.68 NA NA NA 3.85 6.90 NA 0.00 3.33 NA NA 4.76 NA NA 0.00 NA 3.57 4.00 9.09 NA NA NA 0.00 3.12 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K jcn_only_AD Nrg,I_chrX_8411470_8425729,RI_chrX_8411636_8425729,RI_chrX_8412432_8425557 chrX + chrX_8411668_8425729;chrX_8411454_8425729 chrX_8411543_8425729 chrX_8425730_8425829;chrX_8411428_8411453 0.00 NA NA 4.76 NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 K cassette Lasp,RI_chr3L_16674471_16704042 chr3L - chr3L_16674471_16704042 chr3L_16674471_16687301;chr3L_16687397_16704042 chr3L_16687302_16687396 chr3L_16674371_16674470;chr3L_16704043_16704142 99.30 100.00 99.08 99.35 100.00 100.00 95.91 98.82 100.00 100.00 98.96 99.42 98.90 98.86 100.00 99.31 98.80 99.01 100.00 99.57 100.00 99.35 98.83 99.31 95.79 99.05 99.30 98.55 96.23 100.00 98.95 94.44 100.00 99.39 98.81 96.77 99.29 100.00 99.24 99.38 93.10 99.51 100.00 99.21 98.36 98.84 100.00 99.22 100.00 98.78 99.43 100.00 100.00 98.15 99.13 100.00 98.77 100.00 K cassette CG4630,RI_chr2R_9103472_9103634,I_chr2R_9103765_9103852,I_chr2R_9103910_9104108,I_chr2R_9103956_9104108,RI_chr2R_9104206_9104265 chr2R - chr2R_9103765_9104108 chr2R_9103765_9103852;chr2R_9103956_9104108 chr2R_9103853_9103955 chr2R_9103665_9103764;chr2R_9104109_9104202 34.21 23.08 29.41 50.00 NA 33.33 29.03 41.18 31.03 33.33 30.00 34.78 NA 25.00 40.00 33.33 NA NA 18.18 32.14 27.27 55.26 24.56 34.21 33.33 40.00 34.78 25.93 71.88 32.00 51.61 50.00 53.85 40.00 33.33 31.03 29.82 34.88 36.17 43.90 71.43 25.00 NA 46.03 40.00 35.90 27.50 59.09 43.75 31.25 41.67 28.57 NA 41.38 46.67 32.26 22.22 54.55 K intron_retention mub,RI_chr3L_21901021_21901163,I_chr3L_21908756_21909179 chr3L + chr3L_21914088_21914156 chr3L_21914087_21914088;chr3L_21914156_21914157 chr3L_21914067_21914087;chr3L_21914157_21914427 90.89 87.50 81.82 100.00 95.45 95.45 100.00 86.96 93.33 93.75 92.86 87.80 93.33 93.33 91.30 94.12 92.86 84.21 NA 86.27 100.00 95.00 88.89 94.29 92.86 95.83 86.21 92.31 94.44 84.00 100.00 75.00 77.78 96.15 95.00 90.00 83.64 80.56 94.29 90.00 86.67 93.48 100.00 80.00 78.95 90.48 86.36 70.83 89.47 92.00 87.10 86.96 81.82 95.00 91.67 90.48 81.82 71.43 K intron_retention crol,I_chr2L_11799403_11802904 chr2L - chr2L_11803899_11806047 chr2L_11803898_11803899;chr2L_11806047_11806048 chr2L_11803785_11803898;chr2L_11806048_11806157 0.00 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2389073;chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2393243 chrX_2387584_2387709;chrX_2388437_2388670;chrX_2389074_2389271;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2393244_2393291 16.67 20.00 NA NA NA NA NA 20.00 16.67 NA NA 5.26 NA NA 20.00 NA NA NA 20.00 20.00 NA NA NA NA NA NA NA NA NA NA NA NA 12.50 20.00 NA 0.00 11.11 NA NA 6.67 NA 20.00 NA 16.67 NA NA NA 16.67 16.67 NA NA NA NA NA 25.00 NA NA NA K alternative_donor Tak1,I_chrX_20388150_20389255 chrX - chrX_20388150_20392250;chrX_20388150_20388725 chrX_20388150_20389255 chrX_20388050_20388149;chrX_20392251_20392299 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19562509_19562629 chr2R_19562508_19562509;chr2R_19562629_19562630 chr2R_19562454_19562508;chr2R_19562630_19562728 11.94 11.36 12.98 7.29 9.33 12.04 39.38 18.10 8.72 11.94 19.39 19.02 16.84 13.68 10.37 10.24 10.78 16.15 13.14 11.28 14.71 15.06 10.12 10.00 15.18 13.67 17.37 9.68 25.49 6.11 19.50 7.79 6.11 11.39 11.76 27.27 10.97 7.76 13.47 9.52 15.00 12.16 10.59 8.11 8.76 16.30 13.16 15.64 10.24 12.86 15.48 12.62 6.82 15.58 10.06 9.26 6.50 8.02 K multi_cassette scrib,I_chr3R_22381374_22399575,I_chr3R_22394393_22399130,I_chr3R_22394407_22399145,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22381374_22399575 chr3R_22381374_22392082;chr3R_22392298_22392645;chr3R_22392949_22393009;chr3R_22393090_22393198;chr3R_22393468_22399575 chr3R_22392083_22392297;chr3R_22392646_22392948;chr3R_22393010_22393089;chr3R_22393199_22393467 chr3R_22381305_22381373;chr3R_22399576_22399605 100.00 100.00 100.00 100.00 97.14 100.00 100.00 98.28 100.00 100.00 100.00 98.68 96.88 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette Zyx102EF,I_chr4_1078380_1078835,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1078380_1078835 chr4_1078380_1078432;chr4_1078778_1078835 chr4_1078433_1078777 chr4_1078280_1078379;chr4_1078836_1078848 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 95.00 98.11 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 94.12 96.15 95.45 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 K jcn_only_AA Mcm3 chrX + chrX_5219686_5219762 chrX_5219686_5219759 chrX_5219452_5219685;chrX_5219763_5220771 100.00 98.65 98.36 100.00 100.00 100.00 98.25 100.00 98.63 97.67 100.00 100.00 100.00 100.00 98.59 97.37 100.00 100.00 100.00 99.37 100.00 100.00 100.00 100.00 100.00 100.00 98.88 100.00 100.00 100.00 97.73 100.00 97.87 100.00 98.00 97.83 99.30 100.00 99.15 100.00 100.00 99.26 100.00 100.00 100.00 100.00 98.78 97.78 100.00 100.00 100.00 100.00 97.30 100.00 95.77 100.00 100.00 100.00 K jcn_only_AA gw,I_chr4_675416_675686,I_chr4_675425_677852,I_chr4_679135_681671 chr4 - chr4_675416_675686 chr4_675425_675686 chr4_675687_675786;chr4_675325_675415 100.00 100.00 100.00 99.63 100.00 99.05 100.00 100.00 100.00 100.00 100.00 100.00 99.25 99.37 100.00 100.00 100.00 100.00 100.00 99.63 100.00 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 99.28 100.00 100.00 100.00 100.00 100.00 99.13 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.67 100.00 99.49 100.00 100.00 100.00 K alternative_last_exon stai,I_chr2L_6110225_6121773 chr2L + chr2L_6122411_6122977 chr2L_6122411_6122697 chr2L_6122978_6124729 chr2L_6122698_6122853 chr2L_6122264_6122410 95.35 95.71 95.18 96.79 98.36 95.83 80.00 93.47 96.74 89.13 94.55 95.73 96.00 97.73 97.30 97.01 96.51 90.28 94.92 94.78 96.55 98.78 95.35 91.89 91.49 92.66 95.51 89.47 93.42 96.55 95.37 84.75 95.56 95.09 96.67 69.23 94.59 94.74 90.20 95.37 89.87 95.60 93.42 95.35 84.38 96.33 97.35 86.89 95.95 96.20 95.89 94.29 97.56 96.00 95.24 95.00 93.18 86.67 K alternative_acceptor CG31324,I_chr3R_21933065_21933306,F_chr3R_21933069_21950156 chr3R + chr3R_21933065_21950156 chr3R_21933065_21933306 chr3R_21932969_21933064;chr3R_21950157_21950256 2.22 3.23 2.27 2.70 2.17 2.38 2.70 3.03 2.38 1.23 2.86 2.47 3.23 2.78 2.00 3.57 1.89 0.00 1.82 1.19 2.00 1.40 3.23 3.57 2.56 2.70 3.57 4.26 1.35 1.19 2.94 2.33 1.05 3.39 2.22 1.89 1.43 14.29 1.16 1.32 2.38 1.23 3.03 2.13 0.00 1.27 2.44 1.16 1.67 1.82 2.22 2.33 0.00 0.00 2.22 6.67 2.56 0.98 K intron_retention RpS13,RI_chr2L_8364126_8364208,I_chr2L_8364128_8364191 chr2L - chr2L_8364126_8364208 chr2L_8364125_8364126;chr2L_8364208_8364209 chr2L_8364028_8364125;chr2L_8364209_8364291 99.88 99.90 99.54 99.58 100.00 99.85 99.92 99.93 99.82 100.00 99.83 99.77 99.89 99.90 97.42 99.96 100.00 99.93 99.72 99.91 99.87 100.00 99.90 100.00 99.60 99.84 99.64 99.72 100.00 100.00 99.84 99.90 99.20 99.68 99.78 99.86 100.00 99.88 99.93 99.75 100.00 99.94 99.87 100.00 99.80 99.42 99.92 99.87 99.88 99.91 99.89 99.83 99.94 99.92 99.88 99.94 99.82 99.70 K alternative_acceptor CG7546 chr3L + chr3L_7508878_7508925;chr3L_7508878_7508967 chr3L_7508878_7508970 chr3L_7508741_7508877;chr3L_7508971_7509150 37.04 43.33 38.89 48.84 46.15 44.44 42.50 42.50 33.75 30.00 36.00 32.73 34.62 26.92 33.33 44.83 25.93 39.29 10.53 31.31 41.38 29.27 32.11 37.66 36.36 19.05 40.58 39.13 27.91 42.00 40.91 39.39 31.82 44.19 29.27 35.19 30.61 40.48 39.02 35.94 29.03 33.90 41.18 36.36 37.50 39.29 29.58 40.74 45.00 40.58 28.74 47.62 40.35 41.27 26.92 37.04 31.94 30.00 K alternative_donor Tim10,CG42497,I_chr2R_17578506_17578580,I_chr2R_17578506_17578584 chr2R - chr2R_17578506_17578580 chr2R_17578506_17578576 chr2R_17578437_17578505;chr2R_17578581_17578627 97.62 97.62 97.12 98.04 98.21 97.40 98.98 99.00 95.05 100.00 97.70 96.69 98.59 98.39 95.18 98.78 96.08 98.82 93.55 96.80 98.97 100.00 96.67 96.55 94.67 98.41 98.63 97.30 95.79 94.83 98.94 98.90 99.04 95.74 98.00 98.18 96.40 94.44 97.62 98.10 96.05 96.43 97.92 100.00 97.67 95.79 96.91 96.52 96.52 98.94 95.18 95.92 96.46 98.11 96.43 100.00 97.20 98.35 K alternative_acceptor mu2,I_chr3L_1945382_1945647 chr3L - chr3L_1945592_1945647;chr3L_1945529_1945647 chr3L_1945574_1945647 chr3L_1945648_1945655;chr3L_1945437_1945528 30.00 50.00 33.33 32.00 25.00 45.45 9.52 28.57 32.26 20.00 33.33 29.17 38.46 45.45 30.00 30.77 18.18 26.67 20.00 34.38 50.00 22.22 35.29 29.41 33.33 25.00 26.67 42.86 33.33 62.50 27.27 57.14 40.00 14.29 0.00 33.33 45.45 36.36 26.67 30.00 33.33 30.00 27.27 22.22 28.57 12.50 30.00 16.67 34.38 23.08 33.33 28.57 44.44 28.57 35.29 28.57 33.33 38.46 K intron_retention CG1399,I_chr2R_3574133_3574191 chr2R - chr2R_3565240_3565323 chr2R_3565239_3565240;chr2R_3565323_3565324 chr2R_3564840_3565239;chr2R_3565324_3565909 81.08 82.81 77.36 97.65 83.72 83.33 83.72 92.55 84.40 62.71 52.17 86.52 81.25 85.11 68.89 84.51 87.10 84.44 83.33 77.31 66.67 69.09 91.01 74.39 82.76 85.71 69.86 75.51 79.71 72.88 76.47 74.51 82.50 88.42 78.26 89.71 74.75 80.36 81.08 87.38 72.13 86.54 76.47 81.93 76.92 73.75 76.71 74.24 85.19 85.26 80.22 76.67 94.12 76.27 77.78 79.66 90.54 81.82 K intron_retention Roughened,I_chr3L_1861677_1861777,I_chr3L_1861677_1861929,I_chr3L_1861677_1862177 chr3L - chr3L_1861677_1861777 chr3L_1861676_1861677;chr3L_1861777_1861778 chr3L_1861577_1861676;chr3L_1861778_1861877 98.53 94.12 96.15 98.53 100.00 96.00 100.00 100.00 100.00 100.00 93.33 100.00 94.12 96.00 100.00 100.00 94.44 95.83 96.30 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 91.67 95.00 93.55 100.00 87.18 92.50 94.12 100.00 100.00 100.00 100.00 93.88 97.44 98.04 94.12 95.45 82.14 97.96 100.00 96.23 100.00 100.00 100.00 100.00 95.65 100.00 96.77 94.74 100.00 90.00 K jcn_only_AA Sp212 chr3R - chr3R_10049251_10049364 chr3R_10049255_10049364 chr3R_10049365_10049530;chr3R_10048474_10049250 96.89 98.39 100.00 98.77 93.94 96.61 96.36 98.72 98.08 91.67 100.00 97.22 100.00 94.00 100.00 96.83 100.00 92.86 98.33 96.91 98.28 93.59 96.88 98.28 94.12 95.56 100.00 NA 96.77 92.50 90.99 95.24 96.30 95.51 98.31 96.67 94.44 95.92 96.92 95.24 94.74 100.00 100.00 100.00 91.11 95.12 100.00 87.88 100.00 98.48 96.34 100.00 92.16 97.06 98.41 95.83 99.21 98.63 K intron_retention CG42394,noncoding_15936,E_chr3R_6675742_6676058 chr3R + chr3R_6675742_6677006 chr3R_6675741_6675742;chr3R_6677006_6677007 chr3R_6675654_6675741;chr3R_6677007_6677210 0.00 0.00 0.63 0.67 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 2.22 0.00 0.00 0.00 0.61 0.00 0.73 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.98 0.87 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 K intron_retention I_chr2L_19644636_19644695,REI_chr2L_19702035_19702145,Nf-YB chr2L + chr2L_19736581_19736633 chr2L_19736580_19736581;chr2L_19736633_19736634 chr2L_19736505_19736580;chr2L_19736634_19736700 8.51 11.36 0.00 6.94 6.45 9.38 11.67 4.00 5.81 6.00 10.71 8.64 12.00 0.00 9.43 5.48 0.00 2.44 10.00 8.42 9.30 8.51 7.55 8.89 17.07 34.62 18.60 13.33 35.42 0.00 7.55 6.25 13.04 9.09 13.04 16.67 5.45 10.00 8.06 7.04 18.33 6.35 12.90 12.82 10.87 5.26 5.77 10.42 5.00 2.78 4.65 5.41 14.89 13.33 4.08 9.09 6.78 4.00 K intron_retention CG5794,I_chr3R_20475643_20475715 chr3R - chr3R_20465487_20465545 chr3R_20465486_20465487;chr3R_20465545_20465546 chr3R_20465381_20465486;chr3R_20465546_20465945 10.46 8.33 5.88 6.45 0.00 4.76 20.83 0.00 14.89 16.00 18.18 14.63 0.00 0.00 11.76 10.00 0.00 0.00 7.41 14.29 8.33 41.18 11.76 10.00 33.33 26.09 18.52 0.00 18.18 14.81 12.50 NA 2.04 15.15 12.00 30.43 10.91 3.70 13.21 3.64 22.22 16.28 14.29 11.54 0.00 15.38 5.56 13.51 6.06 0.00 15.38 22.22 0.00 0.00 4.76 7.14 0.00 0.00 K jcn_only_AD E(Pc) chr2R + chr2R_7339818_7340897;chr2R_7339807_7340897 chr2R_7339889_7340897 chr2R_7340898_7340908;chr2R_7339722_7339806 25.00 NA NA NA NA NA 33.33 NA 33.33 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA 17.39 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 24.24 NA NA NA NA NA NA NA NA NA NA K intron_retention isopeptidase-T-3 chr2R + chr2R_15560103_15560165 chr2R_15560102_15560103;chr2R_15560165_15560166 chr2R_15559799_15560102;chr2R_15560166_15560506 0.00 0.00 0.00 0.00 NA 0.00 3.85 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 13.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.76 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4585,I_chr2R_19752558_19752634 chr2R - chr2R_19751932_19752634 chr2R_19751931_19751932;chr2R_19752634_19752635 chr2R_19750513_19751931;chr2R_19752635_19752734 2.26 3.12 0.00 2.04 2.60 0.00 1.91 1.46 2.63 5.71 3.12 1.74 0.00 0.00 2.25 4.08 2.35 4.05 0.00 2.80 2.90 8.33 2.08 2.50 0.00 0.00 4.88 12.20 5.13 0.00 2.56 0.00 0.00 4.13 2.27 3.57 3.17 0.00 2.82 2.74 0.00 1.82 3.03 0.00 0.00 1.43 4.11 NA 0.85 0.00 1.05 3.39 0.00 4.92 2.35 1.47 1.72 10.53 K multi_cassette CLIP-190,I_chr2L_17394493_17404060,I_chr2L_17401291_17404060,F_chr2L_17401582_17401681,I_chr2L_17401582_17402303 chr2L + chr2L_17401291_17404060 chr2L_17401291_17401518;chr2L_17401582_17402374;chr2L_17402486_17404060 chr2L_17401519_17401581;chr2L_17402375_17402485 chr2L_17401191_17401290;chr2L_17404061_17404076 100.00 100.00 90.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 85.71 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 90.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG8949,I_chrX_16971474_16971708,I_chrX_16971501_16971713 chrX - chrX_16971474_16971713 chrX_16971501_16971713 chrX_16971714_16971808;chrX_16971401_16971473 1.95 4.17 1.89 4.35 0.00 1.92 0.00 0.00 0.97 6.25 0.00 1.94 1.96 1.79 2.38 4.76 0.00 0.00 0.00 2.50 4.76 0.00 2.41 1.56 2.94 5.26 6.00 3.70 5.36 1.96 0.00 0.00 3.12 1.39 6.45 3.45 4.41 0.00 3.51 0.00 NA 1.08 0.00 0.00 6.06 5.88 6.06 2.56 2.27 4.76 1.22 0.00 0.00 0.00 0.00 6.90 3.23 0.00 K alternative_acceptor ck,RI_chr2L_15057324_15057667 chr2L - chr2L_15053518_15057667 chr2L_15053523_15057667 chr2L_15057668_15057767;chr2L_15053414_15053517 57.27 NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA 54.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA K intron_retention Dyrk3,I_chr4_1231226_1233305,I_chr4_1232931_1232996,I_chr4_1233845_1234170 chr4 - chr4_1231226_1232378 chr4_1231225_1231226;chr4_1232378_1232379 chr4_1231145_1231225;chr4_1232379_1233241 0.00 NA 0.00 1.92 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.85 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 5.26 NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K intron_retention RI_chr3R_5088705_5088796,Aats-trp,RI_chr3R_5090799_5091007 chr3R - chr3R_5090780_5091007 chr3R_5090779_5090780;chr3R_5091007_5091008 chr3R_5090699_5090779;chr3R_5091008_5091107 100.00 100.00 100.00 100.00 100.00 100.00 99.32 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 98.53 100.00 100.00 100.00 100.00 100.00 100.00 98.37 100.00 98.46 100.00 97.16 99.32 98.51 98.68 98.39 100.00 100.00 98.73 98.25 100.00 98.77 98.53 98.65 100.00 98.82 98.90 100.00 98.08 97.14 100.00 98.57 96.97 100.00 100.00 99.09 98.68 100.00 100.00 98.44 100.00 100.00 97.62 K alternative_donor RI_chrX_1796525_1796585,mip130,I_chrX_1820956_1821011,CG11596 chrX + chrX_1821927_1822366 chrX_1821953_1822366 chrX_1822367_1822613;chrX_1821726_1821926 93.33 92.59 98.25 88.00 97.44 86.96 92.73 94.59 92.39 90.00 97.06 100.00 97.06 95.35 94.64 92.98 97.06 98.08 95.92 93.00 94.87 88.89 98.25 100.00 92.86 91.49 93.55 95.83 83.87 88.89 76.32 91.67 91.46 91.46 90.70 90.91 95.59 90.91 95.00 93.33 93.75 93.07 96.97 84.62 88.57 92.00 96.97 74.42 95.06 85.71 93.33 96.15 97.14 86.05 98.15 97.62 97.73 89.09 N intron_retention dpr3 chr2L - chr2L_2059984_2065610 chr2L_2059983_2059984;chr2L_2065610_2065611 chr2L_2058819_2059983;chr2L_2065611_2065743 44.00 NA NA 44.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RabX6 chr3L + chr3L_690800_690948 chr3L_690799_690800;chr3L_690948_690949 chr3L_690618_690799;chr3L_690949_691953 0.00 0.00 14.29 0.00 0.00 0.00 4.76 4.55 0.00 0.00 NA 0.00 NA 0.00 0.00 8.70 NA NA 5.26 0.00 NA 26.67 NA 5.88 NA 5.56 7.69 NA 16.67 0.00 NA 0.00 0.00 10.71 0.00 0.00 0.00 NA 4.76 0.00 NA 2.94 NA 0.00 NA 0.00 NA NA 6.67 NA 15.00 NA NA 14.29 0.00 0.00 0.00 0.00 K intron_retention trio,I_chr3L_999683_1009321 chr3L - chr3L_999376_999446 chr3L_999375_999376;chr3L_999446_999447 chr3L_999260_999375;chr3L_999447_999542 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.20 0.00 0.00 0.00 0.29 1.05 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG5991 chr3R + chr3R_19876703_19877425;chr3R_19876703_19877421 chr3R_19876703_19877411 chr3R_19876688_19876702;chr3R_19877426_19877477 57.14 NA NA 66.67 NA NA 40.00 43.75 46.15 NA NA 54.55 NA 50.00 36.36 63.64 60.00 NA 57.14 40.00 NA NA 60.00 NA NA 57.14 60.00 50.00 55.56 71.43 85.71 NA 58.33 57.14 50.00 57.14 66.67 80.00 NA 52.94 57.14 56.25 55.56 66.67 NA 50.00 57.14 50.00 53.33 60.00 44.44 NA 60.00 66.67 40.00 62.50 83.33 55.56 N intron_retention CG32016,I_chr4_972691_972763,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_962905_964307 chr4_962904_962905;chr4_964307_964308 chr4_962836_962904;chr4_964308_964707 100.00 100.00 100.00 100.00 NA 100.00 67.86 71.43 100.00 NA 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 66.67 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 61.11 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 K cassette arr,I_chr2R_9343426_9343486,I_chr2R_9347031_9370659 chr2R - chr2R_9347031_9370659 chr2R_9347031_9369280;chr2R_9369590_9370659 chr2R_9369281_9369589 chr2R_9346931_9347030;chr2R_9370660_9370692 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 94.74 NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 K intron_retention CG9674,I_chr3L_16785706_16785748,I_chr3L_16793055_16800660 chr3L - chr3L_16785687_16785748 chr3L_16785686_16785687;chr3L_16785748_16785749 chr3L_16785606_16785686;chr3L_16785749_16785848 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.40 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Rox8,I_chr3R_19872211_19872659,I_chr3R_19872214_19872630,I_chr3R_19872214_19872636,I_chr3R_19872214_19872838,I_chr3R_19876189_19876240 chr3R - chr3R_19872211_19873682 chr3R_19872214_19873682 chr3R_19873683_19873709;chr3R_19872114_19872210 90.40 NA 80.00 96.15 NA NA NA 90.00 90.32 NA NA 90.48 NA NA NA NA NA NA 85.71 80.56 NA NA NA NA NA NA NA NA NA NA NA NA NA 91.89 NA NA NA NA NA NA NA 90.48 NA NA NA NA NA NA 97.37 NA NA NA NA NA NA NA NA NA N jcn_only_AD TepIV,EI_chr2L_19548696_19549582 chr2L + chr2L_19553294_19553361 chr2L_19553303_19553361 chr2L_19553362_19553915;chr2L_19552956_19553293 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette ben chrX + chrX_13890557_13892127 chrX_13890557_13890648;chrX_13891016_13892127 chrX_13890649_13891015 chrX_13890387_13890556;chrX_13892128_13892800 0.78 0.00 1.69 1.65 1.27 0.79 2.21 0.55 0.95 0.00 0.00 0.82 1.25 0.79 0.67 0.75 0.00 0.00 0.75 1.10 1.12 0.00 0.78 0.00 0.00 0.00 0.00 1.56 0.00 1.37 0.69 1.90 1.12 1.04 1.11 0.00 0.00 0.00 0.00 1.85 0.71 0.42 1.03 0.00 1.26 0.82 0.00 0.74 1.27 0.00 0.88 1.15 1.20 1.06 0.00 0.88 0.00 1.10 K cassette CG9795,I_chr3R_149612_149686,RI_chr3R_149612_150058 chr3R + chr3R_149612_150058 chr3R_149612_149674;chr3R_149887_150058 chr3R_149675_149886 chr3R_149512_149611;chr3R_150059_150064 100.00 100.00 100.00 94.29 100.00 100.00 100.00 100.00 98.36 94.12 90.00 97.62 100.00 100.00 100.00 100.00 100.00 92.31 100.00 98.08 100.00 96.67 92.50 100.00 94.44 100.00 100.00 100.00 94.74 100.00 96.15 100.00 100.00 97.56 96.55 95.24 100.00 100.00 100.00 97.96 95.24 100.00 94.44 100.00 94.44 96.77 96.77 96.67 97.92 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 97.37 K intron_retention CG32452 chr3L + chr3L_22710989_22711074 chr3L_22710988_22710989;chr3L_22711074_22711075 chr3L_22710839_22710988;chr3L_22711075_22712846 20.71 21.43 0.00 38.46 15.38 NA NA 25.00 17.39 NA NA 15.00 NA NA NA 14.29 NA NA NA 14.29 NA NA 18.18 26.67 NA 28.57 83.33 NA 30.77 NA 33.33 NA NA NA NA NA 19.05 26.67 21.43 9.09 NA 23.53 NA 6.67 NA 23.08 21.43 NA 14.29 20.00 7.14 NA NA NA NA 18.75 27.78 NA K jcn_only_AD CG2813 chr2L + chr2L_575091_575143 chr2L_575095_575143 chr2L_575144_575743;chr2L_574780_575090 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 2.44 0.00 NA 0.00 NA NA 0.00 0.00 3.85 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3L_20306985_20307177,CG6680 chr3L + chr3L_20311914_20311970 chr3L_20311913_20311914;chr3L_20311970_20311971 chr3L_20311484_20311913;chr3L_20311971_20312241 0.00 0.00 0.00 7.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 5.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806454_22807254 chr3R_22806453_22806454;chr3R_22807254_22807255 chr3R_22806242_22806453;chr3R_22807255_22807473 100.00 100.00 100.00 100.00 100.00 100.00 90.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor mfas,I_chr3R_7811954_7812017,RI_chr3R_7818607_7818970 chr3R - chr3R_7815051_7817793;chr3R_7815246_7817793 chr3R_7815048_7817793 chr3R_7817794_7817801;chr3R_7814932_7815047 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.32 NA 0.00 0.00 0.92 0.75 0.00 NA 0.00 0.00 0.00 0.40 0.00 0.71 NA 0.57 NA 0.76 0.62 0.00 0.89 0.00 0.00 0.82 0.00 0.00 0.49 0.31 0.34 0.00 0.00 0.83 0.00 0.00 0.00 0.44 0.00 0.33 NA 0.98 0.00 0.00 NA NA 0.00 0.00 0.00 K intron_retention Ge-1,Reps,I_chr2L_11105525_11105656 chr2L - chr2L_11097006_11097061 chr2L_11097005_11097006;chr2L_11097061_11097062 chr2L_11096765_11097005;chr2L_11097062_11097299 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 4.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor rl,I_chr2RHet_199154_207044,RI_chr2RHet_203476_203577,RI_chr2RHet_203592_207044,I_chr2RHet_232696_247338,RI_chr2RHet_240197_247338 chr2RHet + chr2RHet_198760_198981 chr2RHet_198817_198981 chr2RHet_198982_199153;chr2RHet_198753_198759 60.00 NA NA 63.64 NA NA 63.64 63.64 45.45 NA NA NA NA NA NA 18.18 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 55.56 NA NA NA NA NA NA NA NA NA K alternative_acceptor B52,E_chr3R_9488770_9491174 chr3R + chr3R_9491971_9492140;chr3R_9491971_9492077 chr3R_9491971_9492016 chr3R_9491806_9491970;chr3R_9492141_9492586 0.19 0.00 0.00 0.00 0.63 1.02 0.50 0.46 0.22 0.45 0.00 0.20 0.00 0.00 0.00 0.00 0.79 0.55 0.00 0.37 0.71 0.17 0.14 0.16 0.26 0.56 0.39 0.21 0.44 0.00 0.40 0.00 0.52 0.91 0.00 0.00 0.19 0.21 0.15 0.19 0.56 0.19 0.72 0.00 0.00 0.21 0.00 0.00 0.20 0.00 0.18 0.33 0.00 0.33 0.00 0.18 0.00 0.56 K cassette svr,RI_chrX_421417_421591 chrX + chrX_391423_396017 chrX_391423_393881;chrX_394642_396017 chrX_393882_394641 chrX_391354_391422;chrX_396018_396253 61.90 64.44 69.09 78.38 56.82 54.17 56.06 72.97 66.02 65.22 70.21 61.73 77.36 70.00 62.50 72.60 54.17 56.52 61.67 68.50 69.39 51.61 66.13 70.73 51.72 61.90 46.67 57.58 29.17 51.02 51.92 57.89 60.78 63.41 57.50 62.16 72.73 63.16 62.50 48.21 63.16 59.57 64.00 62.22 63.33 50.00 59.09 57.14 60.82 58.97 48.08 57.58 50.00 66.67 65.45 76.92 69.23 60.53 K intron_retention CG14478 chr2R + chr2R_13350011_13350065 chr2R_13350010_13350011;chr2R_13350065_13350066 chr2R_13349499_13350010;chr2R_13350066_13352421 80.00 71.43 87.50 94.44 76.92 84.62 71.43 85.19 88.10 84.62 69.23 84.85 88.89 76.19 77.78 78.26 80.00 76.47 80.00 85.19 76.92 62.50 89.66 77.27 76.19 100.00 84.62 85.19 75.00 83.33 77.78 90.00 70.59 83.33 77.27 100.00 90.48 75.00 84.21 70.73 55.56 82.05 90.91 66.67 62.50 67.86 86.67 67.57 88.46 69.70 87.50 93.33 80.00 77.78 87.50 78.57 80.95 62.50 K alternative_donor CG2694,I_chrX_2608271_2608320,I_chrX_2609471_2609546,RI_chrX_2622297_2622430,RI_chrX_2622435_2622577 chrX + chrX_2608244_2608320 chrX_2608271_2608320 chrX_2608321_2608420;chrX_2608171_2608243 39.23 NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA 27.27 NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA 38.46 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention ChLD3 chr2L + chr2L_16741305_16741365 chr2L_16741304_16741305;chr2L_16741365_16741366 chr2L_16740572_16741304;chr2L_16741366_16741888 20.00 0.00 12.50 26.32 20.00 NA 41.18 10.53 20.69 NA NA 7.69 NA NA 14.29 25.00 14.29 14.29 26.67 7.84 NA NA 21.43 33.33 NA NA NA NA NA NA 23.08 NA NA 18.18 NA NA 23.53 NA 0.00 36.36 NA 20.69 30.77 6.06 15.38 12.50 NA 0.00 31.25 NA 23.53 NA NA NA 13.33 NA 36.36 NA K jcn_only_AA CG7692 chr3L + chr3L_17346838_17346895 chr3L_17346838_17346892 chr3L_17346411_17346837;chr3L_17346896_17347143 90.48 NA NA NA NA NA 90.48 NA 90.32 NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.24 NA NA NA NA NA NA NA 95.45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Sec22,I_chrX_700593_700676,RI_chrX_700599_700665 chrX + chrX_700593_700665 chrX_700592_700593;chrX_700665_700666 chrX_700499_700592;chrX_700666_700765 4.08 0.00 2.33 13.21 2.56 3.33 7.69 7.55 4.48 0.00 7.32 5.45 7.41 10.53 4.08 0.00 3.23 6.25 13.79 6.94 2.94 3.77 5.08 3.85 0.00 5.26 7.14 14.89 10.87 6.82 4.76 0.00 2.27 2.50 11.76 0.00 1.59 0.00 3.70 9.86 5.00 7.14 13.79 0.00 5.71 6.00 0.00 0.00 3.39 6.00 11.54 0.00 4.35 0.00 3.92 3.92 0.00 0.00 K intron_retention nito,I_chr2R_3852832_3852883 chr2R + chr2R_3852832_3856755 chr2R_3852831_3852832;chr2R_3856755_3856756 chr2R_3852732_3852831;chr2R_3856756_3856981 98.39 97.92 97.78 100.00 97.56 97.06 98.28 100.00 100.00 100.00 100.00 100.00 96.97 100.00 97.92 97.96 100.00 97.78 100.00 100.00 100.00 98.41 97.10 98.00 96.67 100.00 100.00 97.37 98.39 97.37 95.92 98.15 99.25 100.00 100.00 97.87 98.48 92.50 96.88 96.67 98.21 100.00 97.22 96.67 96.43 98.39 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 98.08 98.96 K alternative_donor for,I_chr2L_3627621_3631522 chr2L - chr2L_3627636_3631976;chr2L_3627636_3631522;chr2L_3627636_3631962 chr2L_3627636_3631804 chr2L_3626337_3627635;chr2L_3631977_3632151 0.00 NA NA 25.00 NA NA NA 0.00 20.00 NA NA 25.00 NA NA NA 0.00 0.00 NA 0.00 33.33 NA 20.00 0.00 0.00 NA NA 0.00 NA NA 33.33 50.00 NA 0.00 25.00 20.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA NA NA K cassette MTF-1,RI_chr3L_9427314_9427495 chr3L + chr3L_9424434_9428956;chr3L_9423937_9428956 chr3L_9424434_9427495,chr3L_9423937_9427495;chr3L_9427599_9428956 chr3L_9427496_9427598 chr3L_9423442_9423936;chr3L_9428957_9429107 93.94 NA 90.00 100.00 100.00 100.00 93.33 94.12 96.00 NA NA 100.00 100.00 90.00 90.91 100.00 100.00 100.00 90.00 100.00 100.00 93.75 88.24 84.62 100.00 72.73 91.67 100.00 72.73 100.00 92.86 NA 90.00 100.00 88.89 100.00 93.33 87.50 92.86 94.12 100.00 84.21 100.00 92.86 85.71 90.00 88.89 88.89 95.00 100.00 92.86 100.00 100.00 NA 92.31 100.00 100.00 91.67 K jcn_only_AA CG12567,I_chr2LHet_21570_31874 chr2LHet - chr2LHet_21374_21435 chr2LHet_21384_21435 chr2LHet_21436_21569;chr2LHet_21308_21373 81.58 83.33 84.93 71.76 78.05 74.00 71.43 79.65 84.03 85.29 72.09 79.65 90.38 84.62 89.02 80.92 80.70 87.14 81.63 80.85 84.62 81.58 82.98 81.63 76.36 74.65 86.30 100.00 82.61 80.00 73.03 84.85 58.62 79.20 85.19 73.91 72.41 74.47 77.08 81.93 85.71 86.55 78.26 85.53 75.00 69.81 85.71 85.37 87.50 88.46 82.72 80.00 81.08 76.92 73.63 74.00 91.30 83.72 K alternative_donor Elongin-C,I_chr2R_15332885_15332943,I_chr2R_15332885_15333223,I_chr2R_15332885_15333260,I_chr2R_15332885_15333452,I_chr2R_15333309_15333432,I_chr2R_15336252_15338966 chr2R - chr2R_15332885_15333452 chr2R_15332885_15333432 chr2R_15332785_15332884;chr2R_15333453_15333532 100.00 100.00 100.00 99.48 100.00 100.00 100.00 100.00 100.00 100.00 99.08 99.59 100.00 100.00 100.00 100.00 100.00 99.28 99.24 99.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.34 100.00 99.35 100.00 100.00 100.00 100.00 99.44 99.28 99.61 99.46 99.61 100.00 100.00 99.42 99.62 100.00 99.22 99.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Droj2,RI_chr3R_9207981_9208471,RI_chr3R_9208529_9209185 chr3R + chr3R_9210302_9210391 chr3R_9210301_9210302;chr3R_9210391_9210392 chr3R_9209957_9210301;chr3R_9210392_9211007 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 K intron_retention CG13771 chr2L - chr2L_6663068_6663131 chr2L_6663067_6663068;chr2L_6663131_6663132 chr2L_6662854_6663067;chr2L_6663132_6663374 10.48 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA 14.29 NA NA NA NA NA NA NA NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2388436;chrX_2388671_2389073;chrX_2389272_2389644;chrX_2389762_2395659 chrX_2388437_2388670;chrX_2389074_2389271;chrX_2389645_2389761 chrX_2387149_2387248;chrX_2395660_2395759 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.75 1.17 0.00 0.00 5.32 0.00 1.72 0.00 0.00 0.00 0.00 1.22 0.99 0.00 2.27 0.00 2.27 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 1.12 0.00 1.25 1.96 0.00 1.45 0.00 2.74 7.14 0.00 NA 1.54 0.56 0.00 0.00 0.00 0.00 NA 1.02 0.00 0.00 2.04 K intron_retention His2Av,E_chr3R_22693209_22693387 chr3R + chr3R_22693209_22693390 chr3R_22693208_22693209;chr3R_22693390_22693391 chr3R_22693131_22693208;chr3R_22693391_22693487 1.04 0.47 1.01 0.95 0.66 0.75 1.57 1.55 1.18 1.48 0.59 0.74 0.53 0.62 0.72 1.41 0.83 0.79 0.54 0.81 0.48 1.87 1.46 0.94 1.87 0.81 1.89 2.77 1.69 0.99 1.04 1.13 0.90 1.45 1.48 1.83 1.87 1.43 0.71 1.28 0.67 1.08 1.20 0.73 1.32 1.12 0.63 0.82 1.28 0.90 1.17 1.31 0.88 1.00 1.15 1.54 1.13 0.89 K intron_retention sbr,RI_chrX_10731248_10731484,CG32669 chrX - chrX_10731248_10740139 chrX_10731247_10731248;chrX_10740139_10740140 chrX_10731148_10731247;chrX_10740140_10740227 0.00 0.00 0.00 0.00 2.50 0.00 1.32 0.96 3.03 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 1.92 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 4.17 0.00 K intron_retention cv,RI_chrX_5584191_5585924,I_chrX_5584351_5585924,I_chrX_5584353_5585924,I_chrX_5584357_5585924,I_chrX_5584683_5585924 chrX + chrX_5585022_5585924 chrX_5585021_5585022;chrX_5585924_5585925 chrX_5584351_5585021;chrX_5585925_5586024 3.92 0.00 3.08 0.00 5.26 2.27 2.00 9.52 4.65 0.00 5.26 5.26 0.00 0.00 6.12 0.00 4.65 0.00 3.92 2.44 4.00 22.22 4.65 3.12 0.00 2.86 6.25 14.29 11.76 0.00 0.00 7.69 4.76 0.00 6.67 0.00 8.06 7.32 6.56 6.90 0.00 4.21 0.00 7.32 1.92 0.00 2.94 2.70 4.12 5.71 4.88 0.00 0.00 5.56 2.78 4.65 2.08 4.17 K intron_retention tsr,I_chr2R_19932706_19933121 chr2R - chr2R_19932443_19932514 chr2R_19932442_19932443;chr2R_19932514_19932515 chr2R_19932337_19932442;chr2R_19932515_19932705 0.13 0.05 0.10 0.16 0.19 0.19 0.23 0.19 0.21 0.00 0.00 0.29 0.00 0.06 0.13 0.07 0.12 0.05 0.05 0.16 0.23 0.11 0.09 0.18 0.19 0.17 0.37 0.80 0.44 0.00 0.09 0.13 0.00 0.16 0.24 0.25 0.00 0.11 0.23 0.26 0.10 0.16 0.00 0.00 0.16 0.00 0.05 0.14 0.26 0.07 0.22 0.13 0.06 0.11 0.17 0.04 0.06 0.04 K alternative_donor Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046104;chr3L_16045316_16046104;chr3L_16045275_16046104 chr3L_16045277_16046104 chr3L_16046105_16046204;chr3L_16045216_16045250 4.17 3.23 5.00 4.05 13.04 2.27 7.69 5.00 4.00 4.55 3.45 2.70 6.67 2.04 4.17 6.25 8.11 7.69 3.45 4.94 0.00 5.26 3.70 5.88 3.57 3.51 6.38 0.00 4.76 5.66 5.66 0.00 3.33 4.44 0.00 5.41 3.85 3.57 6.25 1.56 6.90 6.82 2.33 5.00 0.00 0.00 0.00 3.90 5.26 0.00 5.13 6.25 0.00 NA 8.47 4.17 8.33 0.00 K jcn_only_AD CG14225,I_chrX_19569702_19569879,I_chrX_19573364_19573474 chrX - chrX_19567504_19568543 chrX_19567504_19568537 chrX_19566669_19567503;chrX_19568544_19569688 32.43 31.34 36.80 35.35 35.15 34.82 39.61 34.44 32.33 32.43 31.25 30.58 26.97 33.51 29.10 28.57 33.80 34.72 30.84 37.96 30.19 39.93 34.43 33.44 32.39 39.36 38.43 32.24 29.27 30.10 33.10 32.52 27.81 38.84 37.11 31.39 30.07 37.39 32.52 29.02 35.76 31.43 31.91 32.69 29.21 31.97 31.80 31.85 33.54 38.43 36.97 32.85 28.88 40.49 29.52 30.63 30.92 23.53 K intron_retention Nup358,I_chr3R_21078958_21079044,CG11857,CG11858,CG11859 chr3R + chr3R_21084714_21084791 chr3R_21084713_21084714;chr3R_21084791_21084792 chr3R_21084702_21084713;chr3R_21084792_21085154 99.54 100.00 100.00 99.48 98.04 100.00 99.42 99.55 99.52 98.25 96.34 99.50 100.00 100.00 100.00 99.58 100.00 98.81 99.25 99.64 98.89 98.90 100.00 100.00 100.00 99.00 100.00 100.00 97.87 98.75 98.66 98.90 98.84 99.53 100.00 100.00 98.46 100.00 100.00 99.36 100.00 99.45 100.00 100.00 98.75 99.33 98.88 100.00 99.54 98.21 100.00 100.00 100.00 97.44 99.22 100.00 97.17 100.00 K alternative_donor TMS1 chr3L + chr3L_16405981_16406347 chr3L_16406009_16406347 chr3L_16406348_16406903;chr3L_16405851_16405980 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13413922_13414338;chr2R_13413823_13414338 chr2R_13413919_13414338 chr2R_13414339_13414406;chr2R_13412209_13413822 18.07 19.63 15.15 14.77 17.53 19.66 18.75 17.61 20.24 6.82 21.59 16.53 24.49 17.78 16.80 21.77 21.10 12.62 20.91 15.25 18.45 18.40 14.22 15.60 17.24 18.52 18.07 15.28 13.54 18.18 20.00 20.22 18.57 16.24 13.77 19.86 15.38 22.48 14.74 20.30 23.68 13.68 13.33 21.80 21.37 19.70 16.48 12.12 15.93 21.35 13.33 18.18 23.40 10.98 20.44 19.74 8.75 14.16 K intron_retention CG18432 chr2R + chr2R_13428327_13428384 chr2R_13428326_13428327;chr2R_13428384_13428385 chr2R_13427507_13428326;chr2R_13428385_13429328 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD BtbVII,I_chr3L_3150858_3150927,I_chr3L_3151185_3151263 chr3L + chr3L_3148688_3149627;chr3L_3148738_3149627 chr3L_3148748_3149627 chr3L_3149628_3150153;chr3L_3148679_3148687 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 K intron_retention sima,F_chr3R_25908044_25945850 chr3R + chr3R_25893557_25893619 chr3R_25893556_25893557;chr3R_25893619_25893620 chr3R_25893335_25893556;chr3R_25893620_25893786 10.53 8.33 4.76 21.43 4.76 14.29 4.44 7.32 10.71 NA 0.00 10.71 6.25 13.33 16.67 17.39 0.00 4.00 2.38 16.28 10.53 6.45 23.68 12.90 NA 3.45 33.33 23.53 9.09 0.00 11.54 NA 21.43 4.88 10.00 17.39 7.14 12.90 14.29 15.38 0.00 8.93 19.05 0.00 NA 5.56 NA 7.32 16.33 16.00 13.16 0.00 NA NA 10.26 38.46 20.00 NA K jcn_only_AA Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16106466_16106984;chr3L_16106466_16106995 chr3L_16106466_16107411 chr3L_16106332_16106465 51.35 53.33 66.67 48.00 46.51 68.09 40.00 54.65 47.66 60.00 40.91 57.72 46.94 58.06 55.93 54.72 35.14 60.38 47.22 59.49 34.15 78.18 42.31 46.84 54.17 44.26 51.90 68.00 47.06 51.35 47.83 40.00 62.14 55.56 58.62 46.97 42.86 48.39 46.43 55.05 42.50 46.02 46.30 47.37 61.22 48.33 53.66 55.10 53.64 55.17 54.21 41.07 45.45 58.70 46.27 52.38 40.00 59.26 K jcn_only_AA CG5514,RI_chr3R_23768206_23768306,Gp93 chr3R + chr3R_23767856_23768306;chr3R_23767856_23768156 chr3R_23767856_23768309 chr3R_23765429_23767855;chr3R_23768310_23768406 71.91 80.65 92.59 82.76 71.79 68.85 86.54 72.34 75.38 68.57 85.71 66.98 70.73 72.34 70.18 71.67 63.89 78.95 76.19 75.97 76.32 52.78 76.71 73.68 77.97 70.69 71.05 48.98 70.15 82.22 74.19 64.56 70.53 79.22 70.49 60.38 70.37 69.57 72.54 71.54 70.53 74.14 69.77 67.27 68.55 72.48 80.51 71.62 71.74 82.54 68.57 NA 85.23 74.53 71.83 72.00 76.87 80.46 K jcn_only_AA CG11779,CG5835,I_chr3R_14982264_14982380,I_chr3R_14982295_14982380 chr3R - chr3R_14982264_14982380 chr3R_14982269_14982380 chr3R_14982381_14982480;chr3R_14982195_14982263 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.28 98.48 NA 100.00 96.67 100.00 98.18 100.00 100.00 95.65 100.00 100.00 100.00 98.57 100.00 100.00 100.00 97.44 98.78 96.55 100.00 100.00 94.81 100.00 97.41 96.77 100.00 98.92 100.00 98.18 100.00 99.32 100.00 100.00 100.00 100.00 98.72 100.00 98.61 100.00 100.00 100.00 98.77 100.00 100.00 98.61 98.28 98.33 98.68 99.27 K alternative_donor rudimentary,I_chrX_16561903_16561969 chrX + chrX_16561893_16561969 chrX_16561903_16561969 chrX_16561970_16562069;chrX_16561803_16561892 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 1.64 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 1.69 0.76 0.00 0.00 1.52 0.86 0.41 0.00 0.00 0.00 0.36 0.00 0.43 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.75 0.00 0.00 0.57 0.00 0.00 0.52 0.00 0.47 K jcn_only_AA CG10737 chr2R + chr2R_15062814_15063770;chr2R_15062814_15063692 chr2R_15062814_15063752 chr2R_15062592_15062813;chr2R_15063771_15063852 5.10 6.54 7.60 5.62 5.38 5.59 22.78 5.69 6.99 8.82 4.84 4.27 4.03 7.14 6.99 2.87 4.17 2.82 4.51 5.46 9.52 8.33 3.26 3.55 2.88 1.42 1.45 9.84 5.10 4.12 4.69 5.63 8.29 4.72 3.36 2.40 1.91 6.94 4.84 3.45 4.32 5.43 6.25 3.21 15.91 3.51 3.90 5.50 6.05 0.96 4.55 8.33 6.59 3.70 3.98 5.33 5.34 5.77 K intron_retention CG1667,RI_chr2R_5731409_5731653,I_chr2R_5732410_5732504 chr2R + chr2R_5731914_5731965 chr2R_5731913_5731914;chr2R_5731965_5731966 chr2R_5731846_5731913;chr2R_5731966_5732034 0.00 0.00 0.90 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chr3L_707623_707678,CkIIalpha-i3,CG13896,RI_chr3L_711692_711744 chr3L - chr3L_708929_708990 chr3L_708928_708929;chr3L_708990_708991 chr3L_708612_708928;chr3L_708991_709023 0.00 0.00 NA 4.76 NA NA 0.00 0.00 0.00 NA NA 0.00 5.00 NA 0.00 0.00 0.00 0.00 0.00 2.15 NA 0.00 0.00 NA NA 6.67 25.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA 0.00 NA 0.00 4.00 NA NA NA NA NA 0.00 0.00 0.00 0.00 K intron_retention Kdm4B chr2R - chr2R_9085665_9085717 chr2R_9085664_9085665;chr2R_9085717_9085718 chr2R_9085182_9085664;chr2R_9085718_9085796 94.44 93.75 100.00 100.00 91.67 93.75 90.62 91.89 93.48 100.00 NA 89.74 100.00 94.74 95.24 100.00 95.00 91.67 96.55 86.21 93.75 NA 100.00 100.00 100.00 100.00 80.00 NA 81.25 100.00 91.30 90.00 95.65 94.87 NA 100.00 83.33 NA 90.00 93.33 100.00 86.84 92.86 NA NA 85.71 100.00 85.29 97.44 NA 94.44 91.67 NA NA 95.83 NA NA 100.00 K intron_retention CG10050,RI_chr3R_3075676_3075741 chr3R + chr3R_3075680_3075741 chr3R_3075679_3075680;chr3R_3075741_3075742 chr3R_3075471_3075679;chr3R_3075742_3075841 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 6.25 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 6.67 0.00 NA 5.56 NA NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 NA 0.00 K intron_retention I_chr3L_21265768_21265914,ppl chr3L - chr3L_21273890_21273950 chr3L_21273889_21273890;chr3L_21273950_21273951 chr3L_21273496_21273889;chr3L_21273951_21274229 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 5.45 0.00 0.00 0.00 0.00 0.00 3.23 5.00 0.00 3.57 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 K intron_retention CG9003,I_chr2R_7531685_7531831,RI_chr2R_7538713_7538828 chr2R - chr2R_7531685_7531831 chr2R_7531684_7531685;chr2R_7531831_7531832 chr2R_7531585_7531684;chr2R_7531832_7531921 100.00 94.12 100.00 100.00 90.91 100.00 100.00 96.30 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 94.74 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 97.06 NA 100.00 100.00 100.00 94.12 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 90.91 100.00 91.67 K alternative_acceptor CG2004,I_chrX_8608130_8608508,RI_chrX_8608147_8608508,I_chrX_8608169_8608438 chrX - chrX_8608169_8608508;chrX_8608130_8608508;chrX_8608147_8608508 chrX_8608150_8608508 chrX_8608509_8608538;chrX_8608069_8608129 0.00 0.00 0.00 0.00 0.00 0.00 12.00 0.00 0.00 5.26 0.00 5.26 0.00 9.52 8.70 5.88 0.00 0.00 0.00 2.44 0.00 0.00 6.90 0.00 0.00 0.00 0.00 4.88 0.00 7.69 0.00 0.00 0.00 6.45 0.00 0.00 0.00 4.35 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 6.67 0.00 0.00 8.00 0.00 0.00 0.00 K alternative_donor I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781 chr3R - chr3R_17190715_17200781 chr3R_17190715_17190859 chr3R_17190579_17190714;chr3R_17200782_17200881 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Ptp61F,RI_chr3L_1345162_1345493 chr3L - chr3L_1345162_1345497 chr3L_1345162_1345493 chr3L_1345062_1345161;chr3L_1345498_1345593 0.50 0.57 0.59 1.27 0.00 1.37 0.58 0.00 0.00 0.00 0.00 0.41 0.78 0.00 0.65 0.00 0.00 0.00 0.00 0.43 0.70 0.37 0.51 0.51 1.02 0.00 0.00 0.68 0.00 0.44 1.25 1.24 0.27 0.97 0.66 0.68 0.80 0.65 0.90 0.34 0.61 0.00 0.84 0.50 1.37 0.00 0.00 0.64 0.79 0.50 1.03 0.93 1.82 0.00 0.00 0.47 0.00 0.33 K intron_retention bel,I_chr3R_4484110_4485922 chr3R - chr3R_4481629_4481708 chr3R_4481628_4481629;chr3R_4481708_4481709 chr3R_4480932_4481628;chr3R_4481709_4483565 4.56 3.48 6.78 3.53 4.76 7.27 6.00 4.62 2.82 6.98 3.85 3.40 5.26 5.13 1.04 13.79 6.35 9.09 11.11 5.00 5.88 4.56 3.91 5.75 0.00 3.39 4.95 7.63 6.25 3.96 0.00 7.14 3.60 3.88 4.41 5.92 6.32 4.08 4.49 3.02 5.86 3.61 5.45 4.88 4.14 6.45 3.47 4.07 3.70 4.17 4.88 0.00 6.04 0.00 3.37 3.54 3.47 5.87 K alternative_last_exon l(2)03709,I_chr2R_14707617_14707700,I_chr2R_14708048_14708095 chr2R + chr2R_14708789_14709480 chr2R_14708789_14708997,chr2R_14708789_14708994 chr2R_14709481_14709793 chr2R_14708998_14709344 chr2R_14708689_14708788 64.59 64.45 64.72 85.64 60.10 63.57 77.46 72.45 67.51 32.94 75.23 73.87 68.99 72.88 64.74 61.97 68.53 62.65 65.62 68.44 65.64 37.50 63.89 60.47 75.74 78.01 65.63 64.16 61.68 56.21 67.51 52.11 44.47 69.74 65.54 86.46 54.95 60.33 55.26 64.34 65.82 65.47 69.39 63.99 40.55 61.87 63.21 52.41 72.11 59.48 63.59 67.67 66.88 62.17 67.27 60.74 64.59 59.93 K intron_retention CG7911 chr3R - chr3R_25830172_25830303 chr3R_25830171_25830172;chr3R_25830303_25830304 chr3R_25830026_25830171;chr3R_25830304_25830403 0.00 0.36 0.00 0.68 1.19 0.00 0.00 0.32 0.00 0.00 0.00 0.46 0.00 0.97 0.85 0.00 0.00 0.47 0.00 0.44 0.00 1.46 0.00 0.00 0.00 0.00 1.72 3.09 0.57 1.19 0.56 0.00 0.00 0.00 0.45 0.00 0.27 0.00 0.89 0.58 0.00 0.69 0.00 0.00 1.06 0.27 0.00 0.00 0.00 0.00 0.57 0.00 0.38 0.00 0.00 0.24 0.26 0.00 K jcn_only_AD Inos,I_chr2R_3344353_3345211 chr2R - chr2R_3342737_3342806 chr2R_3342737_3342802 chr2R_3342419_3342736;chr2R_3342807_3343274 0.48 0.49 0.74 0.86 1.27 0.57 0.48 0.71 0.48 0.23 0.85 0.13 0.72 0.64 0.48 0.32 0.41 0.83 0.72 0.35 0.69 0.59 0.54 0.33 1.09 0.81 0.30 0.44 0.69 0.13 0.75 0.56 0.60 0.31 0.48 0.14 0.65 0.48 0.20 0.46 0.47 0.61 0.70 0.47 0.45 0.64 0.44 0.58 0.37 0.39 1.02 0.52 0.00 0.20 1.13 0.43 0.27 0.48 K intron_retention CG14711,CG18764,CG14712 chr3R + chr3R_7449449_7449507 chr3R_7449448_7449449;chr3R_7449507_7449508 chr3R_7449323_7449448;chr3R_7449508_7450016 5.56 5.00 6.90 10.64 6.67 0.00 7.32 8.33 3.95 5.26 0.00 3.17 9.09 0.00 5.71 0.00 0.00 0.00 0.00 2.44 8.11 10.53 7.69 5.56 14.29 3.85 8.22 5.00 5.56 7.55 3.70 6.82 5.43 2.38 5.00 12.24 8.33 6.56 9.52 8.57 27.27 4.84 0.00 6.00 8.57 6.56 2.13 6.45 3.57 8.77 0.00 8.70 0.00 2.13 0.00 8.16 5.13 3.53 K intron_retention CG4747 chr2L + chr2L_10004572_10005423 chr2L_10004571_10004572;chr2L_10005423_10005424 chr2L_10004535_10004571;chr2L_10005424_10005506 0.00 5.56 0.00 1.57 0.00 0.00 0.00 2.33 0.00 0.00 3.03 1.71 3.12 3.12 0.98 1.77 0.00 0.00 0.00 2.21 0.00 4.00 0.00 0.00 6.52 1.33 2.33 0.00 6.52 2.13 0.00 0.00 2.08 2.68 0.00 0.00 1.33 2.00 4.29 1.30 2.13 1.59 3.28 0.00 0.00 0.00 0.00 4.35 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 K alternative_donor I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10065652_10065776;chr2R_10065709_10065776 chr2R_10065706_10065776 chr2R_10065777_10066101;chr2R_10065603_10065651 75.41 79.73 76.00 75.26 75.41 77.05 74.03 72.04 75.00 81.13 78.12 73.39 81.36 75.44 75.90 72.86 78.33 74.07 75.00 77.27 71.93 78.67 77.06 75.27 68.42 79.71 74.23 70.59 76.39 75.79 73.33 84.21 75.44 77.78 81.16 73.68 75.22 81.71 73.28 71.81 77.36 72.87 72.73 75.34 74.63 75.64 74.55 77.95 71.43 74.29 74.77 78.08 77.36 65.96 80.68 71.19 76.60 81.71 K intron_retention B52,F_chr3R_9488762_9491174,E_chr3R_9488770_9491174,RI_chr3R_9489655_9489713 chr3R + chr3R_9488774_9491174 chr3R_9488773_9488774;chr3R_9491174_9491175 chr3R_9488692_9488773;chr3R_9491175_9491248 2.92 2.69 2.49 5.88 2.11 2.92 3.03 4.23 2.50 3.53 4.22 3.14 3.95 3.66 3.00 2.74 3.18 2.07 3.55 2.39 2.65 1.93 4.45 4.24 4.81 1.62 3.28 2.51 1.16 1.72 3.58 2.16 1.55 3.39 3.86 2.70 3.21 3.39 3.53 2.92 1.94 3.08 2.84 4.73 0.78 2.46 2.78 1.32 4.23 2.50 3.40 3.29 2.48 2.24 3.02 2.20 2.99 1.66 K intron_retention CG31715,I_chr2L_10341933_10342151,I_chr2L_10341933_10342155 chr2L + chr2L_10341933_10342149 chr2L_10341932_10341933;chr2L_10342149_10342150 chr2L_10341833_10341932;chr2L_10342150_10342233 0.00 0.00 0.00 1.96 0.00 0.00 1.92 0.59 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention crq,I_chr2L_452737_452797 chr2L - chr2L_449321_449434 chr2L_449320_449321;chr2L_449434_449435 chr2L_449230_449320;chr2L_449435_450540 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette mys,I_chrX_7958795_7961094 chrX + chrX_7958795_7961094 chrX_7958795_7959480;chrX_7959566_7960130;chrX_7960216_7961094 chrX_7959481_7959565;chrX_7960131_7960215 chrX_7958695_7958794;chrX_7961095_7961194 6.25 NA NA NA NA NA 0.00 NA 5.88 NA NA NA NA 10.00 NA NA NA 7.69 NA 12.50 NA 4.88 6.67 5.26 NA NA 6.25 NA NA 9.09 17.65 NA NA 7.69 NA NA 4.76 NA 3.85 5.56 NA 5.26 NA 6.67 NA NA NA NA 5.56 3.85 6.25 8.33 NA NA 6.25 NA NA NA K intron_retention CG7375 chr3L - chr3L_8189984_8190241 chr3L_8189983_8189984;chr3L_8190241_8190242 chr3L_8189633_8189983;chr3L_8190242_8190543 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754284_15755172;chrX_15754284_15755148;chrX_15754284_15755021;chrX_15754284_15755184;chrX_15754284_15755409;chrX_15754284_15754777;chrX_15754284_15755416;chrX_15754284_15755268 chrX_15754284_15755256 chrX_15754256_15754283 1.75 0.85 1.53 1.38 4.08 2.65 2.81 1.65 1.78 1.49 0.00 2.41 1.61 2.67 0.00 2.65 0.00 1.08 0.65 1.37 1.16 2.67 2.37 2.70 3.06 2.50 0.79 1.69 0.00 4.00 1.69 1.75 2.44 1.54 0.88 3.70 1.01 1.09 2.17 0.00 4.05 0.93 2.34 3.01 5.13 3.48 4.00 0.00 1.66 1.79 0.71 0.68 1.75 2.38 1.29 4.08 2.54 2.47 K cassette NaCP60E,REI_chr2R_20803355_20804842,I_chr2R_20805053_20805170 chr2R + chr2R_20802986_20804842 chr2R_20802986_20804294;chr2R_20804414_20804842 chr2R_20804295_20804413 chr2R_20802804_20802985;chr2R_20804843_20804942 21.43 NA NA NA NA NA NA NA 21.05 NA NA 14.29 NA NA NA NA NA NA NA 25.00 NA NA 21.43 NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA 21.43 25.00 NA 5.56 NA NA NA NA NA 25.00 16.67 NA 23.08 NA NA NA NA NA NA NA N alternative_acceptor CrebA,I_chr3L_15541841_15542648 chr3L + chr3L_15543697_15544191 chr3L_15543697_15543963 chr3L_15543247_15543696;chr3L_15544192_15546314 28.26 21.05 30.00 32.14 NA 30.00 28.57 24.24 25.86 30.77 100.00 25.71 33.33 30.77 35.00 36.36 27.78 36.84 23.08 21.54 25.00 42.86 25.00 21.88 21.05 23.53 36.84 33.33 23.08 100.00 45.45 25.00 30.00 24.14 25.00 35.00 21.82 25.00 22.22 28.57 NA 28.26 26.32 40.00 21.43 26.67 25.00 100.00 30.30 25.00 17.24 30.77 17.86 100.00 100.00 30.77 20.00 45.00 K alternative_acceptor CG14712,CG10535,I_chr3R_7498847_7498975 chr3R + chr3R_7479961_7480016 chr3R_7479961_7480013 chr3R_7478578_7479960;chr3R_7480017_7480248 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 1.92 0.00 0.00 0.00 0.00 0.00 2.94 2.70 0.00 0.00 2.70 3.51 0.00 1.30 1.89 0.00 0.00 0.00 2.70 5.71 1.85 0.00 1.96 0.00 1.32 2.08 0.00 0.00 0.00 0.00 2.56 1.56 1.82 1.72 3.57 0.00 1.72 0.00 3.57 1.92 1.72 3.64 1.72 0.00 0.00 4.35 0.00 0.00 1.64 3.49 K intron_retention Neu3,F_chr3R_10498229_10498337 chr3R - chr3R_10496565_10497093 chr3R_10496564_10496565;chr3R_10497093_10497094 chr3R_10496222_10496564;chr3R_10497094_10497245 0.00 1.26 0.95 0.00 0.00 0.00 0.00 0.68 1.98 0.00 0.00 1.14 2.90 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 1.67 0.55 0.00 0.00 0.84 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.58 0.00 0.00 0.00 1.94 0.00 0.00 0.00 K alternative_acceptor SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_16982134_16983336;chr3R_16982134_16983164;chr3R_16982134_16983218;chr3R_16982134_16983159 chr3R_16982134_16982890 chr3R_16982126_16982133;chr3R_16983337_16983376 14.29 11.76 10.53 12.00 16.67 13.33 27.78 12.50 13.04 22.22 10.00 13.16 15.00 16.67 10.53 15.62 18.75 14.29 14.29 7.14 15.38 16.67 15.79 14.29 26.67 14.29 16.67 14.29 16.67 18.18 11.54 28.57 12.50 12.82 12.50 15.38 22.22 25.00 14.29 18.18 9.09 12.50 7.14 14.29 16.67 6.25 12.50 13.04 14.89 0.00 29.41 30.77 11.11 20.00 7.14 11.11 12.50 14.29 K jcn_only_AD CG4502,I_chr2L_7196721_7196787,I_chr2L_7196858_7204207 chr2L - chr2L_7196858_7203938;chr2L_7196858_7203942 chr2L_7196858_7203934 chr2L_7196788_7196857;chr2L_7203943_7204239 33.33 29.17 31.11 26.79 25.00 28.21 38.81 33.33 30.00 NA 23.81 36.36 20.00 34.88 34.04 29.82 25.00 44.12 37.21 37.29 34.62 NA 34.04 41.38 NA 41.38 20.00 NA 43.33 35.14 27.03 40.91 32.50 33.33 31.58 34.29 NA NA 47.83 15.00 29.03 23.19 39.02 33.33 NA 25.49 35.00 34.29 43.33 34.78 21.88 32.14 NA NA 24.56 42.86 NA 45.45 K jcn_only_AA RhoGAP19D,EI_chrX_20347839_20348139,DMG4-MB6.chrX.37.001,RI_chrX_20380495_20381649 chrX - chrX_20347836_20348139 chrX_20347839_20348139 chrX_20348140_20348214;chrX_20347739_20347835 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention gfzf,MB8.chr3R.pasa.66 chr3R - chr3R_2975355_2975887 chr3R_2975354_2975355;chr3R_2975887_2975888 chr3R_2973400_2975354;chr3R_2975888_2976217 6.67 3.70 10.81 3.70 8.33 8.33 7.69 10.00 4.00 0.00 5.00 7.50 0.00 8.33 5.56 12.50 6.25 4.88 5.71 9.09 3.85 4.00 5.71 5.77 5.00 13.79 7.81 11.76 9.38 4.76 8.11 11.76 6.25 8.89 6.25 7.32 4.59 5.66 4.00 6.67 NA 7.58 6.90 0.00 13.64 15.00 5.41 14.29 4.84 10.53 5.17 7.14 8.70 6.67 6.06 6.90 7.14 NA K intron_retention pcm chrX - chrX_19381746_19381824 chrX_19381745_19381746;chrX_19381824_19381825 chrX_19381165_19381745;chrX_19381825_19382718 0.00 8.33 0.00 5.88 0.00 0.00 6.67 10.71 3.45 NA NA 2.63 NA 0.00 0.00 0.00 NA 0.00 NA 2.70 6.67 50.00 0.00 0.00 7.69 NA 0.00 NA 10.71 0.00 0.00 0.00 5.00 0.00 0.00 0.00 10.81 0.00 5.00 4.65 0.00 6.25 NA 0.00 0.00 3.12 3.70 0.00 0.00 0.00 2.63 0.00 4.00 3.45 4.35 0.00 0.00 0.00 K intron_retention RI_chrX_7172561_7252693,CG1677,I_chrX_7178792_7252693,RI_chrX_7179818_7179946 chrX - chrX_7178792_7179946 chrX_7178791_7178792;chrX_7179946_7179947 chrX_7178692_7178791;chrX_7179947_7180046 8.16 6.38 5.26 13.16 9.52 0.00 13.56 10.20 11.70 0.00 7.69 10.53 17.14 23.08 8.62 6.82 9.38 15.00 7.69 9.33 10.53 5.41 5.41 4.29 5.71 8.33 5.80 9.68 4.76 6.78 10.00 NA 3.45 13.64 5.13 4.76 3.12 2.82 8.33 12.50 5.88 12.35 16.67 10.20 3.57 7.89 7.14 9.52 11.90 4.00 9.59 8.89 0.00 0.00 11.11 8.33 2.00 8.00 K intron_retention Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654157,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15649320_15649379 chrX_15649319_15649320;chrX_15649379_15649380 chrX_15649252_15649319;chrX_15649380_15649595 8.99 7.41 3.03 1.64 13.79 12.20 12.86 2.70 5.71 4.76 0.00 3.77 8.89 9.30 0.00 5.26 6.98 5.13 6.82 0.00 8.70 10.34 15.15 8.82 25.00 29.41 16.13 0.00 46.15 9.09 12.07 NA 0.00 4.29 12.50 13.64 14.29 9.52 9.09 5.88 20.00 9.38 12.50 16.67 14.29 0.00 NA 6.67 10.00 0.00 16.67 10.00 0.00 NA 6.12 15.79 20.83 0.00 K intron_retention bif,I_chrX_11581793_11583233 chrX + chrX_11587211_11587579 chrX_11587210_11587211;chrX_11587579_11587580 chrX_11587144_11587210;chrX_11587580_11588761 20.71 NA NA NA NA NA 21.43 NA 30.00 NA NA NA 0.00 NA NA NA NA NA NA 30.77 NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 19.05 NA NA NA NA NA 25.00 20.00 NA 25.00 NA NA NA NA NA NA 14.29 NA NA K alternative_acceptor Rbp1-like,R_chrX_13277657_13278332 chrX - chrX_13275077_13278332 chrX_13277657_13278332 chrX_13278333_13278432;chrX_13274199_13275076 59.26 48.65 70.83 97.62 41.18 58.33 87.88 86.05 84.38 66.67 91.67 83.33 90.91 88.00 82.14 91.18 94.74 66.67 100.00 63.86 63.16 42.86 39.71 36.96 48.15 75.00 58.82 35.42 64.00 72.97 80.00 38.64 36.00 76.00 40.54 30.16 60.61 32.50 35.85 55.00 30.23 73.08 78.26 76.47 26.32 48.33 34.00 32.04 67.65 46.15 56.76 55.00 57.58 33.33 82.14 39.02 59.26 44.93 K intron_retention CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_120266_120420 chr2L_120265_120266;chr2L_120420_120421 chr2L_120225_120265;chr2L_120421_120430 78.56 75.00 78.95 71.43 85.71 85.71 91.89 80.43 78.33 NA 75.00 82.22 93.33 75.00 82.14 82.35 76.47 82.35 78.79 94.74 72.73 65.52 79.31 76.92 85.19 88.89 87.50 76.47 66.67 67.86 66.67 69.23 55.56 79.25 77.78 81.48 71.43 85.71 73.33 80.56 58.82 79.59 76.19 66.67 NA 76.67 92.31 82.14 76.00 76.92 78.79 66.67 NA 87.50 86.21 58.82 68.42 85.71 K jcn_only_AA wge chr3R - chr3R_18542354_18542655;chr3R_18542390_18542655 chr3R_18542387_18542655 chr3R_18542656_18542685;chr3R_18540256_18542353 32.52 30.61 33.33 47.06 35.00 NA 65.00 29.17 25.86 30.00 NA 50.00 NA NA 20.00 NA NA NA NA 28.57 NA 44.33 23.44 28.38 35.29 59.09 36.11 36.67 53.23 45.28 31.71 22.86 30.33 22.86 20.51 69.23 37.04 26.00 21.54 37.00 47.37 22.00 NA 34.69 28.00 34.48 13.04 42.86 19.05 50.00 40.91 70.00 21.62 NA 20.83 58.33 16.22 21.05 K intron_retention Hmu chr3R + chr3R_23115043_23115101 chr3R_23115042_23115043;chr3R_23115101_23115102 chr3R_23114837_23115042;chr3R_23115102_23115402 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.16 0.00 0.00 0.00 0.00 0.00 0.41 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Pms2,I_chr2R_11257708_11257764 chr2R - chr2R_11255877_11255990 chr2R_11255939_11255990 chr2R_11255991_11256244;chr2R_11255577_11255876 100.00 100.00 100.00 95.45 100.00 100.00 86.96 94.74 95.65 NA 100.00 85.00 100.00 100.00 100.00 100.00 90.91 100.00 91.67 97.06 100.00 88.89 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 93.75 100.00 92.31 100.00 100.00 85.71 100.00 83.33 93.33 96.15 100.00 95.83 100.00 100.00 100.00 93.33 92.86 88.24 96.00 93.33 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 K multi_cassette Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24348983_24351592 chr3R_24348983_24349248;chr3R_24349420_24349755;chr3R_24349940_24349995;chr3R_24351030_24351592 chr3R_24349249_24349419;chr3R_24349756_24349939;chr3R_24349996_24351029 chr3R_24348417_24348982;chr3R_24351593_24351772 100.00 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA 50.00 NA NA 66.67 NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA N alternative_donor I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545799_17545850;chr2R_17545767_17545850;chr2R_17545781_17545850;chr2R_17545686_17545850;chr2R_17545690_17545850 chr2R_17545615_17545850 chr2R_17545851_17545985;chr2R_17545613_17545614 65.38 71.43 86.36 80.70 90.74 88.89 71.15 87.88 84.91 20.00 81.58 85.07 88.57 83.33 89.86 69.23 88.64 81.40 89.58 87.78 84.62 50.00 0.00 9.09 30.00 83.33 23.08 20.00 34.62 25.00 84.44 65.38 64.00 86.76 55.56 27.27 39.13 43.75 36.84 30.43 47.06 86.89 85.71 35.00 74.14 41.67 45.00 38.89 84.51 28.57 28.57 27.27 80.00 11.11 87.69 31.82 46.67 53.57 K intron_retention MB8.chr3R.pasa.66,CG1091,I_chr3R_2909743_2909904,I_chr3R_2910029_2910096,RI_chr3R_2910490_2910686,RI_chr3R_2911041_2911135,RI_chr3R_2946518_2946663 chr3R - chr3R_2909847_2909904 chr3R_2909846_2909847;chr3R_2909904_2909905 chr3R_2909729_2909846;chr3R_2909905_2910004 9.45 5.71 6.67 23.53 12.50 NA 8.00 7.81 14.63 9.52 11.54 13.33 17.86 0.00 20.59 16.33 12.00 11.11 9.68 12.50 8.33 13.64 15.15 7.69 0.00 12.50 38.89 33.33 18.18 6.98 20.41 8.82 8.00 10.77 0.00 23.33 9.38 4.55 6.56 7.81 13.89 15.00 12.50 3.45 2.00 5.56 5.56 3.45 6.67 11.43 15.52 5.71 7.14 16.98 3.03 4.92 2.67 2.04 K intron_retention pds5,I_chr2R_7922306_7922992 chr2R + chr2R_7916879_7916936 chr2R_7916878_7916879;chr2R_7916936_7916937 chr2R_7916671_7916878;chr2R_7916937_7917105 2.00 0.00 4.26 7.69 2.94 0.00 5.71 0.00 4.27 0.00 0.00 5.06 2.38 0.00 2.00 7.25 3.64 0.00 0.00 4.40 2.94 0.00 5.26 2.94 7.69 12.20 10.17 6.25 11.11 0.00 8.77 0.00 3.23 1.75 10.34 0.00 0.00 0.00 4.44 0.00 NA 2.94 5.41 1.82 NA 0.00 0.00 0.00 6.49 0.00 3.39 0.00 NA 0.00 1.92 0.00 0.00 NA K alternative_donor Dystrophin,noncoding_17759,I_chr3R_15289404_15290179 chr3R + chr3R_15289362_15290221;chr3R_15289404_15290221 chr3R_15289437_15290221 chr3R_15290222_15290279;chr3R_15289350_15289361 31.01 NA 25.00 30.77 NA NA 55.56 31.25 31.25 NA NA 23.08 20.00 37.50 50.00 33.33 37.50 NA 44.44 23.08 NA NA 22.22 NA NA 33.33 NA NA NA 20.00 36.36 NA 25.00 30.00 NA 0.00 16.67 NA NA 40.00 NA 38.46 33.33 16.67 NA NA NA 28.57 33.33 NA NA NA NA NA 20.00 NA NA NA K alternative_acceptor fdl,RI_chr2R_8394261_8394315 chr2R - chr2R_8378211_8394315 chr2R_8394261_8394315 chr2R_8394316_8394415;chr2R_8378028_8378210 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3018025_3018163;chr2L_3018082_3018163;chr2L_3018038_3018163 chr2L_3018018_3018163 chr2L_3018164_3018185;chr2L_3017982_3018017 3.33 NA NA 3.70 NA 0.00 2.94 2.27 3.77 NA NA 0.00 NA 4.76 NA 2.04 NA NA NA 4.55 NA 3.33 NA NA NA NA NA NA NA NA 0.00 4.00 NA 0.00 NA NA NA NA NA 6.38 4.00 7.14 NA 2.86 4.17 2.56 NA 2.50 0.00 NA NA NA NA NA 4.76 NA NA 9.09 N jcn_only_AD None chrU - chrU_4028377_4028681 chrU_4028377_4028479 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 89.43 100.00 K intron_retention Karl,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11685218_11685390 chrX_11685217_11685218;chrX_11685390_11685391 chrX_11685137_11685217;chrX_11685391_11685480 0.35 0.29 0.00 0.31 0.42 0.58 0.61 0.43 0.21 0.42 0.22 0.29 0.91 0.80 0.10 0.52 0.23 0.37 0.32 0.21 0.48 0.56 0.36 0.43 0.00 0.12 0.61 0.33 0.57 0.26 0.19 0.58 0.32 0.44 0.00 0.17 0.31 0.22 0.19 0.42 0.38 0.38 0.30 0.18 0.35 0.71 0.56 0.50 0.45 0.41 0.35 0.31 0.24 0.59 0.25 0.21 0.18 0.45 K intron_retention I_chrX_1757755_1757801,CG14817,I_chrX_1770939_1771001,RI_chrX_1770945_1771037,RI_chrX_1773382_1773444,trr,I_chrX_1793073_1794406,RI_chrX_1795648_1795745 chrX - chrX_1770939_1771001 chrX_1770938_1770939;chrX_1771001_1771002 chrX_1770845_1770938;chrX_1771002_1771101 92.59 81.82 NA 90.00 NA NA NA 88.89 NA NA NA 100.00 NA NA NA NA NA NA NA 92.86 NA NA 90.00 90.91 NA NA 92.31 88.89 95.83 NA NA NA NA NA 87.50 NA 100.00 NA 94.44 90.91 NA NA NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA 91.67 100.00 NA 100.00 83.33 NA K jcn_only_AA Nmnat chr3R + chr3R_20772018_20772197;chr3R_20772018_20772605 chr3R_20772018_20772675 chr3R_20771916_20772017;chr3R_20772676_20772744 0.00 NA NA NA NA NA 4.55 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA 4.00 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 NA 9.09 0.00 NA 3.33 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA 3.23 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 3.70 0.00 NA 0.00 0.00 7.14 K intron_retention RpS16,RI_chr2R_18493796_18494013,I_chr2R_18494146_18494441 chr2R + chr2R_18493794_18494013 chr2R_18493793_18493794;chr2R_18494013_18494014 chr2R_18493752_18493793;chr2R_18494014_18494064 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 K jcn_only_AD CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907784_9908424;chr2L_9907784_9908307;chr2L_9907784_9908405 chr2L_9907784_9908531 chr2L_9907756_9907783;chr2L_9908532_9908619 14.62 11.67 12.77 8.89 18.42 17.86 19.40 7.41 19.63 NA 14.71 14.00 21.74 17.19 10.42 7.07 10.61 12.31 7.41 18.66 12.82 31.30 13.27 16.22 11.32 8.93 19.57 11.76 21.43 18.31 25.93 6.67 11.27 10.83 20.90 20.41 23.75 14.52 13.04 15.69 14.29 9.68 9.76 22.35 23.33 19.05 30.91 25.00 9.09 18.52 11.83 12.00 21.57 20.00 13.41 16.33 11.43 16.00 K intron_retention Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19562143_19562326 chr2R_19562142_19562143;chr2R_19562326_19562327 chr2R_19561937_19562142;chr2R_19562327_19562386 5.88 2.94 5.36 4.41 6.31 6.67 6.56 5.62 5.53 5.26 7.25 4.83 6.67 5.68 7.14 3.23 3.70 5.75 8.57 3.68 7.41 34.76 8.15 10.34 7.94 3.77 17.82 5.26 14.29 7.00 8.28 4.55 3.92 5.00 9.86 5.81 6.72 8.70 7.87 4.13 12.31 5.76 7.46 3.28 3.67 5.88 8.70 6.45 5.00 7.55 8.27 5.66 2.35 7.69 7.21 5.80 5.00 3.49 K intron_retention CG5792,F_chr2L_12714547_12714695 chr2L - chr2L_12713376_12713442 chr2L_12713375_12713376;chr2L_12713442_12713443 chr2L_12713375_12713375;chr2L_12713443_12713586 6.67 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA 26.67 NA NA 8.70 6.67 NA NA NA NA 23.08 NA NA NA NA NA NA 33.33 NA NA 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA 31.25 NA K intron_retention CG3061 chr3R + chr3R_9860199_9860421 chr3R_9860198_9860199;chr3R_9860421_9860422 chr3R_9860102_9860198;chr3R_9860422_9860765 100.00 100.00 97.83 98.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 97.96 100.00 100.00 100.00 100.00 98.90 96.67 100.00 100.00 100.00 100.00 98.04 97.30 100.00 100.00 96.88 100.00 100.00 100.00 98.68 96.67 96.67 100.00 100.00 97.37 100.00 98.31 98.90 97.67 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.44 98.44 K intron_retention Dscam,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3252988_3255892 chr2R_3252987_3252988;chr2R_3255892_3255893 chr2R_3252840_3252987;chr2R_3255893_3255920 52.78 NA NA 81.82 NA NA NA NA 41.18 NA NA NA NA NA NA NA NA NA NA 78.26 NA 76.92 NA NA NA NA 55.56 NA NA 63.64 NA NA NA 50.00 NA NA 40.00 NA 26.32 38.46 NA 61.54 NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD Osbp chr3R - chr3R_20761871_20761986 chr3R_20761871_20761976 chr3R_20760591_20761870;chr3R_20761987_20763959 100.00 100.00 100.00 100.00 100.00 100.00 98.73 100.00 100.00 100.00 100.00 99.17 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 100.00 K cassette CG11299,noncoding_8970,I_chr2R_19619053_19619186 chr2R + chr2R_19602423_19616571;chr2R_19601642_19616571 chr2R_19602423_19609732,chr2R_19601642_19609732;chr2R_19610399_19616571 chr2R_19609733_19610398 chr2R_19601628_19601641;chr2R_19616572_19616757 98.84 98.04 100.00 93.75 89.74 97.44 100.00 100.00 99.08 94.44 100.00 97.22 100.00 97.92 100.00 98.63 100.00 100.00 98.04 99.17 96.55 94.44 100.00 100.00 95.65 94.74 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 96.67 96.55 100.00 100.00 98.18 97.14 95.24 98.84 100.00 100.00 100.00 100.00 97.06 97.62 98.89 98.31 100.00 96.97 97.67 97.30 98.08 100.00 98.00 97.96 K jcn_only_AD noncoding_7780,CG30120,CG5189 chr2R + chr2R_14333622_14334268 chr2R_14334211_14334268 chr2R_14334269_14334314;chr2R_14333569_14333621 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA NA NA 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor kis,RI_chr2L_242745_242800,I_chr2L_242926_250756 chr2L - chr2L_242745_250756 chr2L_242745_242800 chr2L_242645_242744;chr2L_250757_250774 6.67 6.67 3.33 3.45 0.00 7.69 5.88 3.03 3.57 8.33 7.69 4.00 4.17 4.76 4.76 1.75 6.25 5.26 3.45 2.86 7.14 13.33 4.17 16.67 7.14 5.00 11.11 28.57 22.22 9.09 4.55 20.00 6.90 2.44 11.11 8.33 5.88 11.11 8.33 8.00 25.00 4.88 5.88 7.69 25.00 20.00 33.33 6.25 4.44 33.33 9.09 6.67 0.00 0.00 3.45 20.00 50.00 12.50 K intron_retention CalpA chr2R + chr2R_15316050_15316741 chr2R_15316049_15316050;chr2R_15316741_15316742 chr2R_15315931_15316049;chr2R_15316742_15316784 5.56 7.50 6.35 9.46 7.41 5.56 12.79 5.77 9.18 5.56 5.88 9.88 12.50 4.44 3.28 7.53 6.25 6.52 6.56 5.65 3.70 2.56 7.04 3.12 9.52 5.77 6.56 0.00 5.56 0.00 5.26 4.00 1.71 6.17 3.92 8.16 5.13 0.00 3.77 1.01 8.06 6.67 4.88 5.56 2.82 4.42 4.17 1.98 6.93 8.89 6.94 0.00 0.00 5.00 5.45 4.44 9.52 1.68 K alternative_donor E_chr4_592469_594231,Ephrin,I_chr4_595055_597604,RI_chr4_596272_596341 chr4 + chr4_592737_594238;chr4_592490_594238;chr4_592593_594238;chr4_592469_594238;chr4_592410_594238;chr4_592798_594238 chr4_592646_594238 chr4_594239_594331;chr4_592404_592409 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 4.55 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention Tif-IA chr2L + chr2L_22250315_22250432 chr2L_22250314_22250315;chr2L_22250432_22250433 chr2L_22250120_22250314;chr2L_22250433_22250483 91.11 96.67 95.00 97.59 89.74 97.22 98.67 88.24 96.04 100.00 84.85 89.71 97.67 90.00 91.11 88.89 91.30 83.33 94.83 91.04 93.10 95.45 90.00 88.57 90.48 89.47 74.55 76.47 78.95 86.96 78.95 94.12 88.89 91.40 86.67 72.73 96.43 87.50 90.48 94.29 100.00 92.77 85.42 95.12 84.21 95.83 84.21 100.00 91.00 95.00 92.11 96.77 88.89 83.33 91.30 94.44 92.00 91.67 K intron_retention I_chr2R_7778750_7781059,I_chr2R_7778971_7781059,Ef1alpha48D,I_chr2R_7779690_7780997,I_chr2R_7779690_7781065,I_chr2R_7779690_7783075,I_chr2R_7779719_7781059,I_chr2R_7779813_7781059,I_chr2R_7779892_7781059,EF_chr2R_7779896_7781065,I_chr2R_7780542_7781059,I_chr2R_7780580_7781059,snoRNA:Me28S-A1322,I_chr2R_7780840_7781059,I_chr2R_7780877_7781059,RI_chr2R_7781135_7783075 chr2R + chr2R_7780580_7781059 chr2R_7780579_7780580;chr2R_7781059_7781060 chr2R_7780480_7780579;chr2R_7781060_7781097 100.00 100.00 92.86 100.00 NA 88.89 100.00 94.44 97.06 100.00 100.00 95.24 100.00 100.00 100.00 95.00 100.00 NA 100.00 97.50 100.00 96.30 100.00 95.24 100.00 100.00 100.00 99.36 100.00 100.00 NA 100.00 100.00 94.74 93.33 100.00 96.97 100.00 100.00 96.77 NA 100.00 100.00 100.00 100.00 100.00 96.43 100.00 96.88 100.00 100.00 100.00 100.00 100.00 93.75 100.00 96.67 100.00 K alternative_donor CG8111 chr3L - chr3L_7907098_7907160 chr3L_7907098_7907158 chr3L_7906760_7907097;chr3L_7907161_7907751 97.22 100.00 100.00 95.24 100.00 100.00 100.00 95.00 97.22 95.24 94.12 96.97 100.00 92.86 94.44 100.00 92.86 100.00 93.33 95.74 100.00 97.30 97.73 100.00 95.45 92.86 100.00 100.00 91.89 100.00 93.33 100.00 97.22 96.00 95.24 100.00 98.04 100.00 95.35 97.96 96.97 100.00 100.00 97.44 97.37 100.00 96.30 96.97 95.45 96.97 93.02 100.00 92.00 97.62 94.12 97.37 96.67 95.24 K jcn_only_AD Rga,Spec2 chr3R - chr3R_1434742_1435371 chr3R_1434742_1435353 chr3R_1434172_1434741;chr3R_1435372_1435603 79.35 74.31 76.24 83.54 87.67 72.94 79.35 86.24 83.75 68.29 66.67 79.87 86.44 76.12 70.83 80.20 78.72 80.00 77.61 77.91 86.11 77.02 80.23 78.21 70.13 86.59 77.78 86.87 82.58 82.80 83.65 83.33 69.23 81.90 82.20 80.60 74.71 79.17 80.79 57.28 79.62 75.76 67.53 75.00 75.00 80.50 74.18 75.00 82.28 85.14 84.14 81.69 80.79 78.75 80.91 76.88 79.14 72.14 K intron_retention CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4838984_4839037 chr3R_4838983_4838984;chr3R_4839037_4839038 chr3R_4838559_4838983;chr3R_4839038_4839214 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor Lag1,I_chrX_6152540_6152929,RI_chrX_6153758_6161036,I_chrX_6160907_6161036 chrX - chrX_6152540_6152682 chrX_6152584_6152682 chrX_6152683_6152827;chrX_6152440_6152539 0.32 0.20 0.78 0.22 0.26 0.00 0.19 0.37 0.29 0.00 0.00 0.61 0.32 0.77 0.25 0.73 0.32 0.00 0.59 0.28 0.22 0.00 0.15 0.00 0.67 1.89 0.83 0.58 0.36 0.00 0.27 0.00 0.45 0.53 0.39 0.66 0.48 0.18 0.50 0.45 0.67 0.28 0.78 0.39 0.00 0.49 0.36 0.00 0.46 0.35 0.37 0.27 0.00 0.45 0.24 0.55 0.28 0.00 N jcn_only_AD CG11151 chrX + chrX_13634528_13634710;chrX_13634146_13634710 chrX_13634652_13634710 chrX_13634711_13635156;chrX_13633982_13634145 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG30344,RI_chr2R_5033951_5034150,I_chr2R_5036518_5036570 chr2R + chr2R_5033478_5034150 chr2R_5033951_5034150 chr2R_5034151_5034250;chr2R_5033378_5033477 8.33 11.54 12.90 6.67 11.76 3.57 12.07 7.55 10.61 16.67 10.34 8.33 18.18 11.11 7.69 11.54 11.76 6.67 5.88 8.93 14.29 11.76 7.14 7.32 7.14 8.70 7.69 8.33 11.11 6.90 12.90 5.56 4.35 12.50 10.71 6.67 12.00 6.67 4.44 6.12 4.55 8.93 11.54 3.85 15.38 7.89 8.33 8.33 9.68 6.67 6.56 7.14 10.00 7.69 3.70 9.09 8.51 5.56 N jcn_only_AA CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789740_9789790;chr2L_9789694_9789790;chr2L_9789718_9789790;chr2L_9789751_9789790;chr2L_9789598_9789790 chr2L_9789733_9789790 chr2L_9789791_9789832;chr2L_9789594_9789597 65.14 60.00 67.28 65.14 69.23 73.04 67.51 69.10 64.54 81.03 62.82 70.43 62.83 64.86 64.00 69.78 67.80 65.22 68.00 62.13 63.64 69.49 62.50 64.71 57.14 61.11 61.39 53.85 62.63 67.33 67.57 64.56 70.07 60.24 68.83 37.50 62.96 63.64 70.83 65.07 71.68 68.70 63.56 67.91 69.88 70.45 56.72 67.81 59.45 67.74 69.09 76.67 53.85 57.41 64.21 66.67 52.63 70.54 K intron_retention cl chr2L + chr2L_5520546_5520618 chr2L_5520545_5520546;chr2L_5520618_5520619 chr2L_5520305_5520545;chr2L_5520619_5520700 0.81 0.00 1.19 0.47 0.00 0.00 1.19 0.90 0.66 0.00 0.00 0.82 0.00 0.00 1.60 2.99 0.00 0.00 0.00 0.00 0.00 3.41 2.16 0.00 0.00 0.00 3.31 4.03 7.73 1.60 1.92 1.03 0.83 0.88 0.00 0.70 0.42 1.27 0.71 0.93 1.73 0.88 0.00 0.81 1.00 0.69 0.00 1.47 1.18 2.33 1.15 1.32 1.52 0.48 0.00 0.00 0.00 1.07 K intron_retention CG40351,CREFI_chr3LHet_606442_607073 chr3LHet + chr3LHet_595366_595419 chr3LHet_595365_595366;chr3LHet_595419_595420 chr3LHet_595212_595365;chr3LHet_595420_599027 0.00 NA 0.00 5.41 NA NA 4.44 0.00 6.82 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 3.23 NA 4.17 0.00 0.00 NA 8.70 NA 0.00 0.00 0.00 0.00 NA 0.00 2.70 0.00 NA NA NA NA NA NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K alternative_donor CG1354,I_chrX_9672972_9673084,I_chrX_9673026_9673084 chrX + chrX_9672947_9673084;chrX_9672972_9673084;chrX_9672967_9673084 chrX_9673026_9673084 chrX_9673085_9673184;chrX_9672926_9672946 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Hydr2,RI_chr2L_3164075_3164159 chr2L + chr2L_3167140_3167203 chr2L_3167139_3167140;chr2L_3167203_3167204 chr2L_3166970_3167139;chr2L_3167204_3167558 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 K intron_retention CG8026,I_chr2R_5074640_5074701 chr2R - chr2R_5075771_5076158 chr2R_5075770_5075771;chr2R_5076158_5076159 chr2R_5075625_5075770;chr2R_5076159_5076484 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 4.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CycE,I_chr2L_15729157_15729277,I_chr2L_15737965_15746454 chr2L - chr2L_15737965_15746454;chr2L_15737965_15747832 chr2L_15737965_15740771;chr2L_15740900_15747832,chr2L_15740900_15746454 chr2L_15740772_15740899 chr2L_15737865_15737964;chr2L_15747833_15748266 94.44 100.00 95.24 100.00 94.44 100.00 70.83 96.88 100.00 66.67 87.50 96.15 100.00 100.00 94.12 96.15 100.00 100.00 100.00 91.43 80.00 100.00 94.44 100.00 88.89 92.31 100.00 83.33 45.45 100.00 92.86 87.50 75.00 88.24 93.33 70.00 90.48 85.71 92.31 84.21 NA 95.12 100.00 93.33 45.45 100.00 100.00 81.25 97.62 100.00 95.00 81.82 88.89 100.00 100.00 100.00 85.71 72.73 K alternative_acceptor E(bx),I_chr3L_240127_240176,I_chr3L_246324_246699 chr3L - chr3L_240114_240176;chr3L_240111_240176;chr3L_240127_240176 chr3L_240117_240176 chr3L_240177_240276;chr3L_240027_240110 49.49 46.43 45.74 55.45 48.15 55.32 43.82 56.56 47.59 51.02 59.62 51.77 47.76 45.71 53.76 47.52 48.39 53.95 47.25 51.80 51.43 51.58 54.55 44.29 45.00 50.65 53.66 55.56 48.81 54.08 53.75 46.55 55.45 47.69 50.67 49.44 48.91 40.91 46.05 44.37 51.43 50.70 50.00 43.48 47.95 50.63 52.00 43.37 54.37 52.17 49.49 47.62 48.94 41.86 50.48 50.00 41.18 49.28 K jcn_only_AA SWAP,RI_chrX_936466_936762,I_chrX_936466_936835,RI_chrX_938935_938985,I_chrX_941459_982652 chrX + chrX_936466_936835;chrX_936466_936966 chrX_936466_936762 chrX_936366_936465;chrX_936967_937018 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA 30.00 NA NA NA NA NA NA NA 51.85 NA NA NA NA NA NA NA NA NA NA K intron_retention dorsal,RI_chr2L_17438018_17439189,FI_chr2L_17449369_17450215,noncoding_3500,RI_chr2L_17450002_17450219 chr2L - chr2L_17450002_17450219 chr2L_17450001_17450002;chr2L_17450219_17450220 chr2L_17449902_17450001;chr2L_17450220_17450306 88.56 NA NA 100.00 NA NA 76.47 100.00 90.91 NA NA 100.00 NA NA NA 88.24 NA NA 91.67 70.00 NA NA NA NA NA NA NA NA NA NA 80.00 NA 69.23 92.86 NA NA NA NA NA 90.91 70.00 90.91 NA 88.89 NA 56.25 NA 40.00 92.86 NA 63.64 NA NA NA NA NA NA 45.45 K intron_retention CG13624 chr3R - chr3R_20386230_20386288 chr3R_20386229_20386230;chr3R_20386288_20386289 chr3R_20386104_20386229;chr3R_20386289_20386544 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.64 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA K intron_retention CEI_chrX_17177009_17196871,CG5445,I_chrX_17196752_17196871,RI_chrX_17196772_17196871,I_chrX_17196820_17196875,I_chrX_17198393_17198730 chrX + chrX_17196617_17196871 chrX_17196616_17196617;chrX_17196871_17196872 chrX_17196596_17196616;chrX_17196872_17196971 94.28 90.91 90.91 92.31 NA NA 100.00 93.75 94.12 100.00 NA 100.00 NA NA 100.00 94.74 100.00 NA 91.67 100.00 NA 100.00 76.47 89.47 NA 100.00 100.00 93.33 94.12 100.00 91.67 NA NA 93.33 100.00 88.89 95.24 100.00 100.00 95.45 NA 94.44 100.00 90.00 NA 100.00 90.00 88.89 94.44 89.47 100.00 92.86 NA 88.89 100.00 93.33 90.00 91.67 N jcn_only_AD Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11837971_11838672;chr2R_11837971_11838662 chr2R_11837971_11838112 chr2R_11837919_11837970;chr2R_11838673_11838762 0.00 0.00 0.00 0.00 0.00 0.73 0.98 0.00 0.48 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention yellow-d,yellow-d2,eIF2B-delta chr2R + chr2R_19266806_19266859 chr2R_19266805_19266806;chr2R_19266859_19266860 chr2R_19265867_19266805;chr2R_19266860_19267609 67.35 NA NA NA NA NA NA NA 64.71 NA NA 70.00 NA NA NA NA NA NA NA 71.43 NA NA NA NA NA NA NA NA NA NA NA NA 77.78 NA NA NA NA NA NA NA NA 63.64 NA NA NA NA NA NA 91.67 NA 60.00 NA NA NA NA 60.00 NA NA K multi_cassette Nipped-B,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_615459_615937 chr2R_615459_615513;chr2R_615630_615684;chr2R_615857_615937 chr2R_615514_615629;chr2R_615685_615856 chr2R_615299_615458;chr2R_615938_615993 88.46 80.65 75.68 75.51 88.46 96.00 87.74 81.58 94.38 90.00 96.15 88.16 97.50 87.50 89.47 90.41 88.89 67.74 91.67 88.33 95.83 96.55 89.36 96.00 86.21 45.16 91.30 93.33 51.72 75.00 87.72 100.00 63.33 90.28 96.15 81.58 93.94 76.92 95.24 92.86 83.33 88.24 88.89 90.91 80.00 90.00 87.50 70.37 89.06 94.12 87.76 89.29 77.78 85.71 82.50 100.00 85.71 62.50 K alternative_donor dorsal,RI_chr2L_17438018_17439189,FI_chr2L_17449369_17450215,noncoding_3500,RI_chr2L_17450002_17450219 chr2L - chr2L_17449369_17450325;chr2L_17449369_17450219;chr2L_17449369_17450310;chr2L_17449369_17450215 chr2L_17449369_17449875 chr2L_17449296_17449368;chr2L_17450326_17450359 15.49 19.05 15.79 16.13 15.00 6.25 23.73 14.67 15.49 20.00 17.24 12.31 6.45 18.92 9.09 18.75 20.00 16.67 20.93 9.09 12.50 10.81 22.58 24.00 16.67 8.57 20.00 25.00 13.33 15.79 10.00 10.71 11.32 17.07 9.38 14.29 18.18 18.18 12.50 16.42 12.24 10.71 17.65 20.69 9.68 11.11 20.00 9.35 17.05 20.00 18.52 14.29 7.69 11.76 8.33 8.70 30.00 11.11 K alternative_acceptor CG16838,I_chr3L_16125390_16125510 chr3L + chr3L_16125390_16125588;chr3L_16125390_16125485 chr3L_16125390_16125639 chr3L_16125290_16125389;chr3L_16125640_16126338 38.89 18.18 25.00 28.00 38.46 33.33 23.81 16.67 33.33 54.55 50.00 32.14 23.08 33.33 31.58 28.57 30.00 41.18 38.89 38.89 46.15 52.94 44.44 33.33 25.00 30.77 33.33 30.00 53.85 47.06 33.33 50.00 50.00 37.04 46.15 33.33 40.00 45.45 40.00 56.76 41.67 41.38 40.00 40.00 50.00 55.00 37.50 57.14 29.41 14.29 40.00 50.00 63.64 44.44 37.50 20.00 60.00 67.57 K intron_retention upd3 chrX + chrX_18173917_18174018 chrX_18173916_18173917;chrX_18174018_18174019 chrX_18173480_18173916;chrX_18174019_18174216 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA 10.00 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA N jcn_only_AA Moca-cyp chr3R + chr3R_24167182_24167249;chr3R_24167182_24167906;chr3R_24167182_24167243;chr3R_24167182_24167260 chr3R_24167182_24167348 chr3R_24167094_24167181;chr3R_24167907_24167936 40.68 44.44 40.00 NA NA 30.00 NA 40.74 33.33 40.00 NA 40.00 NA NA 48.28 22.22 NA NA NA 23.21 NA 17.39 49.02 40.62 57.69 NA 57.78 54.17 52.63 21.05 78.20 18.00 8.45 22.58 46.51 43.59 50.98 40.62 52.00 45.76 46.81 40.62 NA 48.48 36.00 45.28 34.29 20.97 34.29 51.52 54.35 54.17 36.36 58.06 NA 52.50 32.26 22.89 K intron_retention exo84 chr3R - chr3R_21877640_21877695 chr3R_21877639_21877640;chr3R_21877695_21877696 chr3R_21877309_21877639;chr3R_21877696_21877851 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 2.13 0.00 0.00 0.00 1.20 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 K intron_retention CG3430,CG10399 chr2L + chr2L_6958288_6958345 chr2L_6958287_6958288;chr2L_6958345_6958346 chr2L_6957027_6958287;chr2L_6958346_6958589 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Trf2,I_chrX_8318346_8318408 chrX + chrX_8317609_8317760 chrX_8317703_8317760 chrX_8317761_8318068;chrX_8317217_8317608 100.00 NA NA NA NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD eIF5,noncoding_24049,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15885416_15885611;chrX_15885416_15885925;chrX_15885416_15885854 chrX_15885416_15885783 chrX_15885316_15885415;chrX_15885926_15885954 0.00 NA 0.00 0.00 NA NA 0.00 0.00 11.11 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA 3.70 NA NA NA NA NA NA NA NA 4.00 K intron_retention MRP,F_chr2L_12727117_12736035 chr2L + chr2L_12730152_12737958 chr2L_12730151_12730152;chr2L_12737958_12737959 chr2L_12730084_12730151;chr2L_12737959_12738176 12.73 9.46 12.50 33.33 10.53 7.58 16.19 20.69 11.54 19.05 10.26 23.53 16.92 21.15 10.94 13.58 13.64 11.54 20.51 19.67 16.98 12.73 13.50 8.25 13.24 16.07 12.93 10.96 6.52 12.50 12.96 4.65 14.04 13.64 8.77 16.67 9.90 5.88 7.32 13.33 10.81 13.73 13.95 10.28 5.56 6.25 5.88 13.04 14.66 8.00 14.96 14.58 5.97 10.91 12.79 6.56 4.12 10.61 K jcn_only_AA CG2046 chr3R - chr3R_1619292_1619362 chr3R_1619299_1619362 chr3R_1619363_1619431;chr3R_1619233_1619291 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 98.31 100.00 100.00 100.00 100.00 100.00 98.82 100.00 100.00 100.00 100.00 100.00 100.00 98.80 100.00 100.00 99.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.54 100.00 100.00 100.00 100.00 100.00 98.63 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG8417,I_chr3R_5585448_5585511 chr3R + chr3R_5586201_5586253 chr3R_5586200_5586201;chr3R_5586253_5586254 chr3R_5585572_5586200;chr3R_5586254_5587619 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 1.39 7.41 0.00 0.00 0.00 0.00 7.32 1.92 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 2.50 7.69 5.71 7.14 0.00 8.51 0.00 1.92 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 1.82 0.00 4.55 3.70 2.56 0.00 0.00 8.70 0.00 0.00 5.13 0.00 7.46 N intron_retention JhI-21,I_chr2L_12055360_12055714 chr2L - chr2L_12053925_12054302 chr2L_12053924_12053925;chr2L_12054302_12054303 chr2L_12053657_12053924;chr2L_12054303_12054498 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA 18.18 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor Myb,RI_chrX_15752571_15753225 chrX - chrX_15751579_15751673;chrX_15751579_15751682;chrX_15751579_15751709 chrX_15751579_15751749 chrX_15749823_15751578;chrX_15751750_15751876 4.35 3.85 2.70 3.45 8.00 3.57 3.33 5.26 5.81 18.75 3.85 5.63 2.56 2.50 2.86 3.30 2.63 3.45 2.08 5.62 3.57 3.12 2.44 10.00 6.67 6.45 3.45 11.76 4.35 3.70 3.77 4.55 4.65 2.53 4.55 5.56 10.00 6.67 5.00 12.50 5.26 5.13 2.70 7.89 0.00 2.70 5.26 7.84 6.67 0.00 3.70 7.69 4.76 0.00 4.08 0.00 5.00 5.17 K intron_retention CG3793 chr2L + chr2L_15764622_15764782 chr2L_15764621_15764622;chr2L_15764782_15764783 chr2L_15764267_15764621;chr2L_15764783_15765208 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 10.87 0.00 0.00 0.00 0.00 3.23 5.88 0.00 3.45 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 5.26 5.13 0.00 0.00 K alternative_donor CG8312 chr3R + chr3R_5433697_5447240 chr3R_5433701_5447240 chr3R_5447241_5448139;chr3R_5433636_5433696 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 4.35 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA K intron_retention CG10674,CG10672 chr3L - chr3L_5129111_5129177 chr3L_5129110_5129111;chr3L_5129177_5129178 chr3L_5129019_5129110;chr3L_5129178_5129483 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.36 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG15073 chr2R + chr2R_14594434_14594602 chr2R_14594521_14594602 chr2R_14594603_14594797;chr2R_14594410_14594433 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA K jcn_only_AA Ssrp,I_chr2R_19695638_19696332,RI_chr2R_19699261_19699317 chr2R - chr2R_19694621_19694683 chr2R_19694624_19694683 chr2R_19694684_19696255;chr2R_19693854_19694620 96.51 94.05 98.72 95.38 95.35 96.77 98.31 94.71 95.31 96.49 98.95 97.08 97.53 97.59 97.35 96.12 93.90 94.68 95.73 96.14 95.18 96.35 98.31 98.21 100.00 96.06 96.70 95.31 98.41 97.46 95.45 98.25 92.62 96.89 100.00 96.23 96.60 97.30 98.57 95.65 97.35 95.19 99.00 96.00 97.98 95.11 99.07 97.07 95.60 95.79 97.89 96.05 96.04 96.51 98.37 96.15 96.35 96.51 K alternative_donor Nipped-B,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_616057_617208;chr2R_616057_616283;chr2R_616057_616318 chr2R_616057_616311 chr2R_615957_616056;chr2R_617209_617308 36.67 36.36 40.00 38.10 33.33 30.00 36.59 33.33 38.46 50.00 33.33 31.43 42.86 26.09 55.56 30.30 50.00 25.00 40.00 36.84 28.57 42.86 41.67 62.50 40.00 33.33 41.18 33.33 33.33 28.57 50.00 NA 37.50 41.38 55.56 23.08 44.44 40.00 50.00 33.33 NA 36.67 50.00 35.71 NA 33.33 0.00 44.44 41.38 20.00 31.58 30.77 0.00 NA 33.33 0.00 50.00 50.00 K intron_retention RI_chrX_1405134_1408515,CG32810 chrX + chrX_1408826_1408889 chrX_1408825_1408826;chrX_1408889_1408890 chrX_1408760_1408825;chrX_1408890_1409074 0.00 0.00 2.35 1.90 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 1.82 0.65 0.00 0.00 0.00 0.00 0.00 1.67 3.37 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 1.41 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 3.57 K jcn_only_AA CG11347,I_chr3L_4412551_4417819 chr3L + chr3L_4419664_4419739 chr3L_4419664_4419713 chr3L_4419429_4419663;chr3L_4419740_4420073 0.00 0.00 0.00 0.00 0.00 0.00 3.12 4.65 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 1.28 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 1.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7033,I_chrX_8985376_8985442 chrX + chrX_8985376_8985442 chrX_8985375_8985376;chrX_8985442_8985443 chrX_8985346_8985375;chrX_8985443_8985542 65.48 90.91 58.33 55.56 NA NA 37.04 78.95 51.72 NA 41.67 54.17 NA NA 69.23 66.67 60.00 41.67 41.18 61.29 76.92 NA 77.78 83.33 NA 53.33 93.75 92.86 77.78 NA NA 63.64 NA 59.09 NA 91.67 76.47 72.73 64.29 66.67 55.56 61.90 69.23 88.89 43.75 64.29 58.82 40.00 50.00 85.71 92.86 66.67 66.67 88.89 53.85 66.67 72.73 50.00 K intron_retention msn,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2556730_2556791 chr3L_2556729_2556730;chr3L_2556791_2556792 chr3L_2556172_2556729;chr3L_2556792_2556866 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.41 0.31 0.00 0.00 0.22 0.00 0.00 0.92 0.00 0.00 0.00 0.60 0.18 0.00 0.24 0.00 0.00 0.00 0.00 0.27 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Mef2,I_chr2R_5804418_5804961,I_chr2R_5806354_5806933,CREFI_chr2R_5809509_5845628,I_chr2R_5814375_5816404,RI_chr2R_5846889_5846948 chr2R - chr2R_5804397_5804961 chr2R_5804418_5804961 chr2R_5804962_5805036;chr2R_5804318_5804396 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 4.00 NA NA 0.00 NA NA NA NA NA NA NA NA 13.33 5.71 0.00 0.00 0.00 NA 4.35 NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 K intron_retention RpS26 chr2L - chr2L_18443074_18443152 chr2L_18443073_18443074;chr2L_18443152_18443153 chr2L_18442505_18443073;chr2L_18443153_18443237 2.27 2.27 3.96 2.99 2.35 0.00 5.66 0.00 1.66 0.00 0.00 2.48 0.00 0.00 3.23 2.35 0.00 1.01 0.00 1.90 0.99 6.45 0.00 2.75 11.39 5.26 23.89 46.40 20.25 0.00 4.04 2.35 1.16 1.46 3.03 2.56 2.48 2.27 3.70 3.40 11.57 2.03 1.28 2.22 1.60 1.61 0.00 1.89 3.12 2.27 4.88 1.72 2.34 2.50 0.00 1.94 3.37 1.72 K cassette CG2246,I_chr3R_26421344_26425985,I_chr3R_26421349_26427017 chr3R - chr3R_26419572_26420539;chr3R_26419539_26420539 chr3R_26419572_26419834,chr3R_26419539_26419834;chr3R_26419892_26420539 chr3R_26419835_26419891 chr3R_26419427_26419538;chr3R_26420540_26420567 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 4.35 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_150069_150295 chr4_150068_150069;chr4_150295_150296 chr4_149969_150068;chr4_150296_150317 13.89 NA 25.00 20.00 0.00 NA 19.51 12.50 23.26 NA NA 12.50 25.00 30.77 NA 17.65 NA NA 11.11 4.76 NA NA NA NA NA NA NA NA NA NA 6.25 NA NA 13.89 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 17.65 NA NA NA NA NA 0.00 NA NA NA K intron_retention Dscam,F_chr2R_3219886_3228832,F_chr2R_3226043_3235353,F_chr2R_3227948_3235353,F_chr2R_3228738_3235353,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3233281_3235353 chr2R_3233280_3233281;chr2R_3235353_3235354 chr2R_3232990_3233280;chr2R_3235354_3235453 16.67 NA NA NA 6.67 NA 36.36 15.00 27.59 NA NA 36.36 NA 7.14 14.29 23.53 NA NA NA 15.38 NA NA NA 0.00 NA NA NA NA NA NA 16.67 NA NA 19.05 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA 36.84 NA NA NA NA NA 12.50 NA NA NA K intron_retention G9a,I_chrX_145325_145634,I_chrX_145570_145634 chrX + chrX_145575_145634 chrX_145574_145575;chrX_145634_145635 chrX_145384_145574;chrX_145635_145734 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 NA 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 NA 4.00 0.00 0.00 NA 0.00 0.00 0.00 2.44 NA 7.14 NA 0.00 0.00 0.00 NA 0.00 3.12 0.00 0.00 4.76 0.00 0.00 0.00 0.00 NA 0.00 K intron_retention CoRest,I_chrX_19416977_19417035 chrX + chrX_19416603_19417035 chrX_19416602_19416603;chrX_19417035_19417036 chrX_19416503_19416602;chrX_19417036_19417135 71.43 60.00 77.78 84.21 76.47 77.78 93.33 76.47 75.61 50.00 81.82 58.82 69.23 80.00 72.73 64.00 63.64 76.19 83.33 79.66 87.50 69.23 75.00 62.07 73.33 78.95 72.00 NA 64.71 78.95 69.57 66.67 82.61 80.00 68.42 69.23 50.00 60.71 68.00 79.31 NA 71.43 68.75 63.64 71.43 91.67 52.94 80.00 77.50 75.00 64.00 61.54 57.89 63.16 69.57 52.38 57.14 76.47 K alternative_acceptor E(bx),I_chr3L_240127_240176,I_chr3L_246324_246699 chr3L - chr3L_240114_240176;chr3L_240117_240176;chr3L_240127_240176 chr3L_240111_240176 chr3L_240177_240276;chr3L_240027_240110 13.77 19.64 20.21 13.64 11.11 8.51 24.72 13.11 14.48 14.29 11.54 16.31 16.42 17.14 11.83 12.87 16.13 13.16 13.19 14.86 20.00 13.68 12.73 17.14 10.00 7.79 9.76 11.11 8.33 10.20 13.75 12.07 7.58 16.15 16.00 10.11 11.96 20.45 14.47 21.83 10.00 11.97 12.96 14.49 13.70 22.78 20.00 23.47 13.75 19.57 17.17 21.43 19.15 16.28 10.48 17.86 15.69 13.77 K alternative_acceptor CG4829,I_chrX_16717240_16717547 chrX + chrX_16717240_16717619;chrX_16717240_16717889 chrX_16717240_16717547 chrX_16717140_16717239;chrX_16717890_16718151 2.06 2.28 1.08 1.45 1.54 0.92 1.28 2.35 1.95 3.31 2.18 1.48 3.78 2.06 2.34 1.76 2.06 1.80 1.70 1.17 1.96 4.89 2.59 1.88 2.70 6.25 2.07 4.76 2.78 2.30 5.88 2.16 3.55 1.45 3.69 1.53 1.77 1.59 1.43 3.79 3.14 2.01 2.25 2.11 4.90 1.71 2.64 2.72 1.67 3.06 2.27 3.21 1.66 1.47 2.06 1.66 1.55 1.14 K intron_retention CG1516,I_chr2R_5743716_5743899,I_chr2R_5746990_5747874,RI_chr2R_5752988_5757801 chr2R - chr2R_5740711_5742015 chr2R_5740710_5740711;chr2R_5742015_5742016 chr2R_5740053_5740710;chr2R_5742016_5743525 40.00 14.29 40.00 NA 28.57 23.53 NA NA 40.00 30.77 NA 53.85 60.00 NA 50.00 54.55 NA 64.29 50.00 46.67 NA 15.62 NA 46.67 NA 26.67 53.33 NA 60.00 NA NA NA NA 58.33 30.77 NA 26.32 NA 35.29 50.00 NA 50.00 35.71 NA NA NA 38.89 NA 35.71 NA 25.00 NA NA 33.33 50.00 45.45 NA NA K jcn_only_AD CG18012 chr3R - chr3R_13635522_13635582 chr3R_13635522_13635579 chr3R_13635117_13635521;chr3R_13635583_13636140 99.77 100.00 100.00 100.00 98.95 99.50 99.15 100.00 99.75 100.00 100.00 100.00 100.00 100.00 99.55 99.44 98.69 100.00 100.00 99.52 100.00 99.32 99.48 100.00 100.00 99.33 99.50 100.00 100.00 99.22 100.00 99.21 99.28 100.00 98.39 98.65 99.04 100.00 99.42 100.00 98.39 99.77 99.43 99.52 100.00 99.51 99.15 100.00 98.78 100.00 99.42 100.00 100.00 100.00 99.54 100.00 99.62 100.00 K alternative_acceptor CG17684,I_chr2RHet_861982_862035 chr2RHet - chr2RHet_669934_738242 chr2RHet_737969_738242 chr2RHet_738243_738431;chr2RHet_669809_669933 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 K alternative_acceptor CG10898,I_chr3R_7384087_7384155 chr3R + chr3R_7384087_7384155 chr3R_7384087_7384147 chr3R_7384024_7384086;chr3R_7384156_7384215 100.00 NA 88.89 100.00 NA NA 100.00 87.50 100.00 NA NA 90.91 NA NA NA 87.50 NA NA 100.00 90.00 NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA 87.50 NA 100.00 NA NA NA NA NA NA 90.91 100.00 NA NA NA NA NA NA 87.50 NA K jcn_only_AD Nc73EF,I_chr3L_16950628_16951334,I_chr3L_16950952_16952198,I_chr3L_16951588_16952198,I_chr3L_16951626_16952198,I_chr3L_16952138_16952198,I_chr3L_16952985_16955434,I_chr3L_16953768_16954599 chr3L + chr3L_16948643_16952198 chr3L_16948692_16952198 chr3L_16952199_16952207;chr3L_16948635_16948642 19.28 25.93 19.51 23.73 NA 4.55 23.26 25.93 20.90 NA NA 8.14 21.21 20.83 19.05 16.67 19.05 NA 21.88 6.25 26.09 NA NA NA NA NA 60.00 NA NA NA 15.00 NA NA 13.24 NA NA 22.22 NA NA NA NA 12.99 14.81 NA NA NA NA NA 13.58 NA NA 28.57 NA NA 16.67 NA NA 18.18 K intron_retention CG17018,R_chr2L_22312023_22363414,CEI_chr2L_22325847_22356902 chr2L + chr2L_22312039_22363429 chr2L_22312038_22312039;chr2L_22363429_22363430 chr2L_22311933_22312038;chr2L_22363430_22363514 25.00 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention slim,CG5189 chr2R + chr2R_14328938_14329008 chr2R_14328937_14328938;chr2R_14329008_14329009 chr2R_14328462_14328937;chr2R_14329009_14329818 96.83 100.00 96.67 100.00 95.45 96.15 100.00 98.72 97.47 94.12 95.45 98.25 96.97 97.06 100.00 98.51 100.00 100.00 97.83 98.11 96.30 100.00 96.43 95.83 95.24 97.30 97.14 95.65 100.00 89.47 97.56 93.75 96.30 94.12 95.24 87.50 88.89 94.44 96.15 96.77 100.00 96.83 96.55 96.00 84.62 96.00 100.00 95.45 96.92 100.00 96.77 96.00 100.00 100.00 100.00 100.00 100.00 95.00 K intron_retention CG4293,RI_chrX_423385_423664,I_chrX_423385_423676 chrX - chrX_423564_423664 chrX_423563_423564;chrX_423664_423665 chrX_423443_423563;chrX_423665_423764 37.50 20.00 NA 43.75 NA NA 60.00 31.25 40.00 NA NA 38.10 NA NA NA NA NA NA NA 25.00 NA NA 31.58 27.78 50.00 NA 56.25 33.33 NA NA NA NA NA NA NA 30.77 41.67 NA 21.74 NA NA 37.50 NA NA NA 41.67 NA NA 25.00 41.67 31.58 NA NA 41.67 NA 46.15 6.67 NA K alternative_last_exon Fmr1,I_chr3R_5934794_5935245,I_chr3R_5934801_5935537 chr3R - chr3R_5929470_5930010 chr3R_5929941_5930010 chr3R_5929395_5929469 chr3R_5929822_5929940 chr3R_5930011_5930518 1.08 1.92 0.00 0.00 1.25 1.22 1.27 1.68 0.46 0.00 0.00 1.40 9.86 1.35 1.04 1.19 2.82 2.30 2.41 1.07 1.23 0.00 0.00 1.34 2.35 1.12 0.79 0.85 7.29 0.00 0.00 2.00 0.62 1.63 0.97 0.89 1.08 0.78 0.63 0.90 1.15 0.59 1.47 0.93 4.21 2.11 1.05 1.39 1.32 2.13 0.69 0.00 0.00 2.47 0.83 0.00 1.19 1.04 K alternative_donor CG5466,CI_chr3R_16445355_16445583 chr3R + chr3R_16445351_16445583 chr3R_16445355_16445583 chr3R_16445584_16445683;chr3R_16445255_16445350 0.00 NA NA NA NA NA NA NA 6.25 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA 5.56 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA N jcn_only_AA Moca-cyp chr3R + chr3R_24167182_24167348;chr3R_24167182_24167249;chr3R_24167182_24167243;chr3R_24167182_24167260 chr3R_24167182_24167906 chr3R_24167094_24167181;chr3R_24167907_24167936 58.26 55.56 60.00 NA NA 70.00 NA 59.26 66.67 60.00 NA 60.00 NA NA 51.72 77.78 NA NA NA 76.79 NA 82.61 50.98 59.38 42.31 NA 42.22 45.83 47.37 78.95 7.52 82.00 91.55 77.42 53.49 56.41 49.02 59.38 48.00 54.24 53.19 59.38 NA 51.52 64.00 54.72 65.71 57.26 65.71 48.48 45.65 45.83 63.64 41.94 NA 47.50 67.74 65.06 K intron_retention SsRbeta chr3L + chr3L_16123384_16123605 chr3L_16123383_16123384;chr3L_16123605_16123606 chr3L_16123008_16123383;chr3L_16123606_16124086 0.00 0.00 0.00 2.50 0.00 0.00 0.63 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.71 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 1.00 0.32 0.00 0.00 0.00 0.00 0.00 K intron_retention Sym chr3R - chr3R_1567312_1567365 chr3R_1567311_1567312;chr3R_1567365_1567366 chr3R_1565316_1567311;chr3R_1567366_1567438 100.00 97.14 100.00 100.00 100.00 97.22 100.00 98.57 98.80 100.00 100.00 98.59 100.00 100.00 98.11 100.00 100.00 97.06 97.37 98.81 100.00 100.00 100.00 100.00 96.77 97.44 100.00 100.00 100.00 96.97 100.00 100.00 98.36 96.55 97.14 100.00 100.00 100.00 100.00 98.41 96.30 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 K alternative_last_exon CG11790 chr3R + chr3R_20874513_20874993 chr3R_20874513_20874600 chr3R_20874994_20875668 chr3R_20874601_20874669 chr3R_20874387_20874512 0.00 0.00 0.00 0.00 0.00 0.00 3.45 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3446,I_chrX_6244272_6244321 chrX - chrX_6244272_6244325 chrX_6244271_6244272;chrX_6244325_6244326 chrX_6244172_6244271;chrX_6244326_6244397 1.23 0.00 0.00 1.65 0.00 0.00 2.42 0.72 1.14 0.00 2.70 2.92 0.00 0.00 1.96 2.94 0.00 0.00 1.87 1.47 0.00 0.00 5.08 2.78 0.00 5.08 9.09 8.33 16.67 0.00 0.00 0.00 0.00 0.79 0.00 11.11 2.99 2.13 2.56 5.66 3.45 0.00 1.23 0.00 1.96 0.00 4.65 0.00 1.63 0.00 3.92 3.77 0.00 5.56 0.00 7.27 0.00 4.35 K alternative_acceptor CG17698 chr3L + chr3L_23741817_23741875 chr3L_23741817_23741871 chr3L_23741752_23741816;chr3L_23741876_23741939 90.00 94.44 87.50 90.62 90.91 94.44 88.57 89.47 89.47 NA 92.31 87.88 83.33 92.31 100.00 80.56 76.92 85.71 83.33 90.20 90.00 NA 95.00 85.71 92.86 91.67 94.12 87.50 88.89 88.89 95.45 92.31 NA 86.84 88.89 90.91 90.00 77.78 91.67 96.55 NA 86.11 80.95 89.47 100.00 94.74 81.25 NA 87.18 90.00 94.74 89.47 92.31 94.12 95.24 100.00 87.50 85.71 K multi_cassette CG5174,F_chr2R_14309059_14311473,CE_chr2R_14309063_14311473 chr2R + chr2R_14309059_14311631 chr2R_14309059_14311373;chr2R_14311377_14311473;chr2R_14311513_14311631 chr2R_14311374_14311376;chr2R_14311474_14311512 chr2R_14308963_14309058;chr2R_14311632_14311756 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention PHGPx chr3L + chr3L_3326368_3326522 chr3L_3326367_3326368;chr3L_3326522_3326523 chr3L_3326358_3326367;chr3L_3326523_3326712 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.61 100.00 100.00 100.00 97.05 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG18815 chr3L + chr3L_11622699_11623566 chr3L_11622699_11623329 chr3L_11622681_11622698;chr3L_11623567_11623845 88.89 88.89 69.23 71.43 83.33 75.00 NA 92.86 95.45 NA 80.00 100.00 NA 87.50 71.43 80.00 80.00 88.89 77.78 75.86 66.67 88.24 94.12 90.91 100.00 100.00 100.00 NA 80.00 100.00 91.67 80.00 71.43 73.08 100.00 100.00 92.86 100.00 87.50 93.33 80.00 90.48 66.67 85.71 81.25 86.67 91.67 100.00 81.25 100.00 72.73 91.67 100.00 90.00 88.89 90.91 91.67 75.00 K intron_retention lark,noncoding_11093,REI_chr3L_7332718_7333975,RI_chr3L_7334219_7334452 chr3L + chr3L_7333009_7333061 chr3L_7333008_7333009;chr3L_7333061_7333062 chr3L_7332968_7333008;chr3L_7333062_7333870 94.44 100.00 NA 100.00 100.00 NA NA 90.91 95.65 100.00 NA 100.00 93.33 NA NA NA 88.89 NA 100.00 100.00 NA 73.91 94.44 100.00 92.86 100.00 90.00 100.00 NA 93.75 NA 91.67 88.24 93.75 100.00 NA 95.00 84.62 91.67 100.00 90.00 90.91 NA 88.89 91.67 100.00 100.00 100.00 92.31 94.74 93.33 100.00 NA 100.00 100.00 93.75 88.89 91.67 K intron_retention CG8547 chr2R - chr2R_10149677_10149979 chr2R_10149676_10149677;chr2R_10149979_10149980 chr2R_10149485_10149676;chr2R_10149980_10151034 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA 6.67 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 4.35 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA K intron_retention CG42389,CG31815,CG4631,I_chr2L_16622842_16634725 chr2L + chr2L_16604397_16621835 chr2L_16604396_16604397;chr2L_16621835_16621836 chr2L_16604238_16604396;chr2L_16621836_16622841 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 NA 0.00 0.00 2.22 0.00 4.88 1.05 4.55 0.00 1.67 1.12 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 3.33 0.00 0.00 0.00 0.00 0.00 0.00 2.04 NA 2.78 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 5.26 NA NA 0.00 K jcn_only_AA mbc,I_chr3R_19615584_19615649,I_chr3R_19625220_19625288 chr3R + chr3R_19625373_19625589 chr3R_19625373_19625465 chr3R_19625289_19625372;chr3R_19625590_19625680 0.00 0.00 0.00 2.27 1.92 0.00 1.41 0.73 0.00 5.56 0.00 0.73 0.00 2.86 0.00 0.00 0.00 0.00 1.54 0.00 0.00 1.75 0.93 1.18 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 4.55 0.73 0.00 0.00 1.20 2.13 0.00 1.37 6.90 0.69 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 3.41 0.00 0.00 0.00 1.41 0.00 3.12 NA K jcn_only_AA CG14133 chr3L - chr3L_11683229_11683325;chr3L_11683239_11683325 chr3L_11683209_11683325 chr3L_11683326_11683412;chr3L_11682731_11683208 81.82 NA NA NA NA NA NA NA 85.19 NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 81.82 NA 80.00 NA NA NA NA NA NA NA NA 81.82 NA NA NA 96.00 88.89 K jcn_only_AD Best1,I_chr3R_5991957_5995913,RI_chr3R_5993184_5995905 chr3R - chr3R_5989579_5990440;chr3R_5989579_5990058 chr3R_5989579_5990296 chr3R_5988921_5989578;chr3R_5990441_5990683 2.33 2.84 2.00 2.99 0.00 3.26 3.77 2.04 0.45 0.79 1.23 1.59 2.22 1.83 4.80 2.50 2.60 0.00 3.12 1.38 2.11 0.00 3.26 0.00 0.00 1.35 3.42 0.00 2.33 0.98 3.82 4.69 2.41 1.96 2.11 5.38 2.60 2.74 0.51 2.03 6.90 3.28 2.47 1.99 0.00 2.10 2.78 2.38 2.26 2.91 1.21 3.85 5.88 2.63 0.94 4.44 7.25 3.70 K jcn_only_AD TSG101 chr3L + chr3L_16836026_16836202 chr3L_16836133_16836202 chr3L_16836203_16836333;chr3L_16835892_16836025 96.32 97.40 96.49 97.26 94.90 96.06 97.88 95.45 97.60 89.39 95.52 98.94 95.03 96.57 97.56 96.89 97.37 96.64 95.85 96.39 94.93 95.59 94.27 98.59 94.17 93.49 95.40 96.12 91.30 92.39 84.49 94.95 98.04 98.72 92.45 84.48 96.95 97.00 94.34 97.62 95.28 97.12 99.11 95.45 96.12 99.25 100.00 92.86 99.23 96.32 96.07 100.00 96.75 97.87 96.74 96.67 93.22 95.81 K intron_retention RpS5a,I_chrX_17038786_17039048,I_chrX_17041234_17041901,I_chrX_17041234_17041720,RI_chrX_17041234_17041750,RI_chrX_17041234_17041760,I_chrX_17041234_17041832,I_chrX_17041234_17041844,I_chrX_17041976_17042236 chrX - chrX_17041234_17042236 chrX_17041233_17041234;chrX_17042236_17042237 chrX_17041175_17041233;chrX_17042237_17042336 0.04 0.00 0.04 0.00 0.00 0.00 0.15 0.06 0.00 0.00 0.08 0.00 0.11 0.11 0.07 0.03 0.00 0.04 0.09 0.06 0.09 0.00 0.06 0.00 0.07 0.08 0.53 0.53 0.17 0.00 0.07 0.00 0.00 0.13 0.00 0.00 0.04 0.04 0.07 0.15 0.00 0.04 0.13 0.05 0.00 0.17 0.00 0.00 0.17 0.18 0.00 0.00 0.00 0.00 0.03 0.00 0.04 0.00 N alternative_donor CG5646,I_chr3R_23386287_23386484 chr3R - chr3R_23385937_23386017 chr3R_23385937_23385995 chr3R_23385868_23385936;chr3R_23386018_23386080 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 82.35 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Dhc64C chr3L - chr3L_4813090_4813327 chr3L_4813089_4813090;chr3L_4813327_4813328 chr3L_4813022_4813089;chr3L_4813328_4815436 3.85 0.00 NA 26.09 NA NA 0.00 0.00 0.00 0.00 NA 7.41 NA NA NA 13.33 NA NA NA 5.71 NA 0.00 4.44 0.00 7.41 NA 0.00 NA 0.00 3.85 NA NA NA 7.41 0.00 0.00 6.45 NA 9.09 18.92 NA 0.00 NA 0.00 NA 11.11 0.00 17.65 6.25 0.00 5.56 NA 0.00 0.00 7.69 3.85 NA 7.14 K jcn_only_AD Hr78,I_chr3L_21490089_21490390 chr3L - chr3L_21488969_21489526 chr3L_21488969_21489520 chr3L_21488699_21488968;chr3L_21489527_21489841 88.89 78.12 84.21 88.24 96.00 88.89 78.38 88.24 88.33 NA 85.71 88.89 86.96 80.00 89.74 NA 87.50 95.83 86.36 84.31 88.00 70.00 97.22 87.18 NA NA 87.18 NA 92.86 NA 92.86 95.45 85.71 94.74 95.83 90.00 88.89 92.00 91.38 77.78 96.00 89.36 NA 92.86 87.80 83.33 88.46 94.74 86.05 100.00 89.19 90.91 91.30 95.24 84.21 89.29 90.91 76.92 K intron_retention Rbcn-3A chrX - chrX_6135845_6135905 chrX_6135844_6135845;chrX_6135905_6135906 chrX_6135761_6135844;chrX_6135906_6136039 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention noncoding_21514,CG4025 chrX + chrX_1971373_1971484 chrX_1971372_1971373;chrX_1971484_1971485 chrX_1971251_1971372;chrX_1971485_1971872 1.54 0.00 1.80 0.00 0.76 0.00 2.72 3.09 1.54 0.00 0.00 1.03 0.00 1.08 4.72 5.21 2.20 1.94 0.00 2.21 2.94 4.46 2.16 1.55 3.80 0.00 1.40 5.00 5.41 0.00 2.94 1.54 4.94 2.58 0.00 3.12 0.90 0.83 1.63 3.85 1.49 1.49 0.00 0.00 2.04 2.70 0.00 1.75 1.31 1.85 1.68 0.00 0.00 0.00 1.42 0.00 2.34 6.52 K intron_retention CG4747 chr2L + chr2L_10007504_10007566 chr2L_10007503_10007504;chr2L_10007566_10007567 chr2L_10007414_10007503;chr2L_10007567_10007941 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.46 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor AIF chr2L + chr2L_2152463_2152662;chr2L_2152271_2152662 chr2L_2152466_2152662 chr2L_2152663_2152944;chr2L_2152233_2152270 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 11.76 0.00 0.00 4.76 0.00 6.25 7.14 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 2.94 0.00 5.26 0.00 0.00 0.00 10.53 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4771,CG17141 chr3R - chr3R_18569029_18569082 chr3R_18569028_18569029;chr3R_18569082_18569083 chr3R_18568897_18569028;chr3R_18569083_18569276 0.00 0.00 0.00 0.00 0.00 0.00 8.00 0.00 0.00 NA 0.00 5.00 0.00 0.00 8.33 5.26 5.56 0.00 0.00 0.00 0.00 NA 5.88 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 3.03 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention Tsp42Ef,I_chr2R_2912947_2914327 chr2R + chr2R_2914663_2914723 chr2R_2914662_2914663;chr2R_2914723_2914724 chr2R_2914489_2914662;chr2R_2914724_2914885 0.00 0.00 1.77 1.19 0.00 0.00 0.00 1.11 1.77 0.00 0.98 1.44 0.00 0.00 0.00 0.00 0.00 0.00 0.86 1.15 0.00 0.31 0.00 0.00 0.00 0.00 3.14 3.92 0.00 0.00 0.00 1.15 0.65 0.00 0.00 0.00 0.00 0.00 1.03 0.59 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.34 2.40 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor AnnIX chr3R + chr3R_16891008_16893167;chr3R_16891137_16893167;chr3R_16891124_16893167 chr3R_16891033_16893167 chr3R_16893168_16893221;chr3R_16890951_16891007 25.89 30.77 19.66 15.29 33.90 18.75 25.33 16.56 30.99 52.17 19.64 27.45 35.09 24.32 17.96 28.16 22.00 25.89 17.49 21.54 28.00 42.03 55.10 70.27 60.00 17.07 52.17 42.11 25.00 19.23 17.92 21.43 9.09 16.95 39.02 33.33 50.00 57.69 66.67 23.19 14.29 20.25 16.28 23.33 13.33 26.39 63.04 12.20 13.86 52.78 52.54 50.00 34.78 61.76 16.46 53.85 60.00 9.30 K alternative_donor Npc1a chr2L - chr2L_10218890_10220868;chr2L_10218890_10220796;chr2L_10218890_10220834 chr2L_10218890_10220692 chr2L_10218779_10218889;chr2L_10220869_10220873 68.18 68.00 62.96 68.18 68.75 75.00 74.19 69.23 69.23 69.23 70.00 60.00 58.82 76.19 48.00 76.60 70.83 70.37 63.33 54.76 76.47 66.67 63.33 57.14 63.64 62.50 72.22 62.50 59.09 65.22 71.43 87.50 60.87 70.69 81.25 60.00 44.44 75.00 53.85 75.68 81.82 65.45 69.57 63.64 66.67 87.50 50.00 64.29 65.00 83.33 72.73 56.25 87.50 75.00 69.23 54.55 60.00 83.33 K intron_retention Su(var)3-3 chr3L + chr3L_20220618_20220677 chr3L_20220617_20220618;chr3L_20220677_20220678 chr3L_20219873_20220617;chr3L_20220678_20221444 96.15 96.15 100.00 100.00 91.67 93.33 94.74 95.45 94.44 100.00 93.33 100.00 91.67 93.75 100.00 100.00 100.00 92.86 100.00 96.55 90.00 100.00 96.15 100.00 91.67 100.00 90.00 93.33 94.44 100.00 100.00 100.00 89.29 96.30 92.31 100.00 96.43 95.00 95.00 95.83 90.00 100.00 100.00 95.00 100.00 91.67 91.67 100.00 96.15 94.74 94.12 100.00 93.33 100.00 100.00 100.00 94.12 95.24 K alternative_acceptor MYPT-75D,RI_chr3L_18657921_18658010 chr3L + chr3L_18657921_18659115 chr3L_18657921_18658797 chr3L_18657821_18657920;chr3L_18659116_18659359 100.00 NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA N jcn_only_AA CG7091,RI_chr3R_8805541_8805680,I_chr3R_8809774_8809832 chr3R + chr3R_8804251_8804598 chr3R_8804251_8804579 chr3R_8803691_8804250;chr3R_8804599_8804832 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.76 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 26.98 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA K intron_retention Mekk1 chr3R - chr3R_14559331_14559475 chr3R_14559330_14559331;chr3R_14559475_14559476 chr3R_14559151_14559330;chr3R_14559476_14562191 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.65 0.00 0.00 0.00 1.53 0.00 1.49 1.09 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention bves chrX + chrX_20932585_20946391 chrX_20932584_20932585;chrX_20946391_20946392 chrX_20931522_20932584;chrX_20946392_20946549 0.00 0.00 NA 12.50 16.67 NA NA 4.55 14.81 NA NA 10.00 NA NA 12.50 14.29 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA 3.70 0.00 0.00 0.00 NA 9.52 NA 0.00 NA NA NA NA 0.00 NA 0.00 NA 0.00 NA 10.53 NA NA 0.00 K intron_retention CG31012,I_chr3R_26643930_26646602 chr3R + chr3R_26635006_26642596 chr3R_26635005_26635006;chr3R_26642596_26642597 chr3R_26634341_26635005;chr3R_26642597_26642846 3.70 1.98 5.00 5.52 2.35 6.41 4.55 2.62 3.38 2.04 6.90 3.61 6.02 4.55 3.20 4.58 5.21 7.48 3.54 5.49 6.74 4.81 3.07 3.12 6.32 6.19 3.70 0.00 9.23 3.70 5.83 4.88 0.00 3.89 3.70 7.37 3.57 0.00 3.68 0.00 3.77 4.10 5.68 3.64 1.82 3.06 4.21 0.00 3.97 1.64 3.16 3.09 2.78 4.05 3.45 4.00 3.10 0.00 K alternative_acceptor Trn chr3L + chr3L_6186723_6187147 chr3L_6186723_6187144 chr3L_6186710_6186722;chr3L_6187148_6187250 78.68 75.00 86.67 79.41 NA 72.73 88.24 75.86 78.57 NA 90.91 70.00 76.92 68.42 76.00 75.51 81.25 73.33 70.83 91.18 93.33 85.71 90.48 77.78 70.00 80.00 76.47 90.48 87.50 81.82 73.08 NA 75.00 83.33 75.00 66.67 94.12 NA 71.43 91.67 NA 81.48 71.43 81.82 NA NA NA 92.31 78.79 NA 77.78 NA NA NA 88.89 NA NA NA K alternative_acceptor ATPsyn-Cf6,I_chr3R_19181508_19181563,I_chr3R_19181524_19181702 chr3R - chr3R_19181508_19181702 chr3R_19181524_19181702 chr3R_19181703_19181733;chr3R_19181424_19181507 0.00 0.00 0.44 0.00 0.00 0.25 0.00 0.00 0.12 0.00 0.53 0.13 0.00 0.55 0.00 0.21 0.00 0.23 0.00 0.17 0.00 0.00 1.32 1.31 0.00 0.55 0.87 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.88 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.78 0.00 0.00 0.63 0.20 0.00 0.00 0.00 K alternative_acceptor CG11652,I_chr3L_11689925_11689974 chr3L - chr3L_11688679_11689974 chr3L_11689925_11689974 chr3L_11689975_11690074;chr3L_11688579_11688678 4.17 3.70 2.94 5.26 8.33 3.70 8.82 4.00 6.06 4.55 10.53 5.71 4.00 5.26 2.50 5.56 4.35 9.09 3.23 3.23 13.33 5.71 4.17 5.56 4.76 3.12 5.26 12.50 18.18 3.23 5.56 4.55 4.35 6.82 0.00 4.17 3.03 4.35 3.57 3.12 5.56 5.00 3.45 3.57 5.88 2.94 3.57 3.12 3.64 0.00 3.33 3.45 9.09 0.00 2.86 4.76 0.00 2.78 K intron_retention Gbeta13F,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,RI_chrX_15755345_15755409 chrX + chrX_15755520_15755598 chrX_15755519_15755520;chrX_15755598_15755599 chrX_15755417_15755519;chrX_15755599_15756919 39.05 NA 46.15 56.25 NA NA 41.67 40.91 40.00 NA NA 33.33 36.36 42.86 NA 35.71 NA NA 53.33 45.00 NA NA 30.77 33.33 NA NA 25.00 NA NA NA NA NA NA 36.84 NA NA NA NA NA 46.15 NA 40.00 NA NA NA NA NA NA 38.10 NA 35.71 NA NA NA 36.36 NA NA NA K intron_retention CG9086,CEI_chrX_16859981_16861527,I_chrX_16861895_16862053 chrX - chrX_16861753_16862542 chrX_16861752_16861753;chrX_16862542_16862543 chrX_16861528_16861752;chrX_16862543_16862684 80.65 83.33 75.00 46.51 76.47 56.25 84.62 77.78 79.17 84.62 88.89 72.73 65.00 80.95 69.23 72.41 68.42 68.42 76.92 68.97 77.78 100.00 70.97 86.96 93.33 84.00 83.33 50.00 87.50 69.57 70.83 NA 86.36 73.53 92.86 94.12 82.61 81.82 94.74 80.65 88.89 87.80 73.68 94.12 87.50 92.86 63.64 84.62 69.44 60.00 70.97 80.95 87.50 NA 82.76 66.67 NA NA K jcn_only_AD yrt chr3R - chr3R_9255492_9255914 chr3R_9255492_9255819 chr3R_9254589_9255491;chr3R_9255915_9256472 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.17 0.00 NA 3.12 NA 0.00 3.70 0.00 0.00 0.00 NA 0.00 0.00 0.00 1.64 4.35 0.00 0.00 4.17 0.00 0.00 0.00 2.50 0.00 0.00 2.78 NA 0.00 0.00 0.00 0.00 2.94 0.00 K alternative_donor Hph chr3R + chr3R_1090925_1092474 chr3R_1091360_1092474 chr3R_1092475_1092754;chr3R_1090787_1090924 88.46 95.00 87.50 72.34 73.08 95.83 93.44 88.46 87.84 53.33 93.75 97.92 92.86 95.45 85.19 94.64 91.30 86.36 94.44 87.50 90.48 84.21 93.33 80.95 72.73 88.46 86.67 88.89 80.00 100.00 91.30 70.00 85.71 93.44 90.91 78.57 83.33 92.31 78.57 88.24 64.29 91.38 95.65 95.00 84.62 94.12 73.68 77.78 94.74 91.67 81.82 87.50 80.00 100.00 90.32 83.33 100.00 88.89 N alternative_donor Inos,I_chr2R_3344353_3345211,noncoding_4874 chr2R - chr2R_3344353_3345211;chr2R_3344353_3346212;chr2R_3344353_3344799 chr2R_3344353_3346113 chr2R_3344253_3344352;chr2R_3346213_3346215 98.83 98.94 99.53 98.83 99.47 99.08 98.59 99.22 98.59 99.53 98.18 97.82 99.48 99.28 98.35 98.36 99.38 98.05 99.44 98.83 98.59 94.92 98.69 98.59 99.37 99.47 99.15 97.68 95.72 98.08 98.24 98.39 96.28 98.73 99.12 99.12 99.57 99.08 98.77 98.37 99.35 98.76 97.90 99.39 98.80 98.34 99.39 99.13 98.57 99.21 98.71 99.27 99.51 98.64 98.43 98.97 99.41 99.22 K jcn_only_AD SD23414,CG9132,I_chrX_16693612_16694097,I_chrX_16693612_16694529,I_chrX_16696492_16696589 chrX - chrX_16693612_16696171;chrX_16693612_16694558 chrX_16693612_16694097 chrX_16693512_16693611;chrX_16696172_16696233 0.00 1.16 1.11 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 1.28 1.07 0.85 0.00 0.00 2.88 0.00 0.00 0.00 1.05 2.33 0.00 0.00 0.00 1.52 0.00 0.81 0.00 0.00 0.00 0.70 1.61 1.23 0.00 1.03 0.00 0.00 0.00 0.00 0.63 1.92 0.00 0.00 0.00 0.00 0.00 1.72 K jcn_only_AA eIF-4E,RI_chr3L_9394049_9394139,RI_chr3L_9394054_9394756,I_chr3L_9394468_9395446,I_chr3L_9394819_9395198,I_chr3L_9394819_9395379 chr3L - chr3L_9394049_9394139 chr3L_9394054_9394139 chr3L_9394140_9394239;chr3L_9393954_9394048 100.00 100.00 100.00 99.23 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.56 100.00 100.00 99.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.56 99.80 100.00 100.00 100.00 100.00 99.60 100.00 99.52 100.00 100.00 98.60 100.00 100.00 100.00 100.00 99.70 100.00 K intron_retention Mec2,I_chrX_19082929_19083066,I_chrX_19083581_19083676 chrX + chrX_19082317_19083066 chrX_19082316_19082317;chrX_19083066_19083067 chrX_19082011_19082316;chrX_19083067_19083166 0.54 0.00 0.66 1.82 0.88 0.70 0.82 0.54 0.70 0.54 3.68 0.57 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 1.76 1.50 0.53 0.71 0.00 0.00 0.67 0.87 2.40 0.89 0.00 0.74 0.80 0.00 0.37 0.40 0.81 0.00 0.00 0.69 0.92 0.62 0.00 0.00 0.53 0.46 0.58 0.00 0.43 0.12 0.56 0.00 0.55 0.71 0.00 0.33 0.81 0.28 K intron_retention GlcAT-P,I_chr3L_11172482_11172633 chr3L - chr3L_11172817_11176733 chr3L_11172816_11172817;chr3L_11176733_11176734 chr3L_11172634_11172816;chr3L_11176734_11177238 2.35 1.09 1.72 5.41 0.00 0.00 0.00 4.26 3.01 0.00 0.00 4.82 1.52 2.56 1.41 2.13 0.00 0.00 0.00 2.82 0.00 5.00 1.64 0.00 4.44 5.26 2.82 3.39 0.00 2.60 2.27 5.00 3.23 2.15 0.00 14.29 3.48 2.70 3.23 4.08 6.67 1.56 3.77 4.55 4.88 4.08 0.00 2.33 0.79 3.45 2.27 4.88 1.52 4.55 2.99 0.00 1.22 2.35 K intron_retention SelR,I_chr3R_6691367_6692250,I_chr3R_6692461_6692530,I_chr3R_6694098_6694160 chr3R - chr3R_6689548_6692250 chr3R_6689547_6689548;chr3R_6692250_6692251 chr3R_6689071_6689547;chr3R_6692251_6692350 14.04 8.33 14.29 26.67 10.42 14.58 20.83 12.31 12.26 14.00 47.22 11.36 20.00 13.79 15.07 10.53 8.00 17.02 12.82 22.22 22.22 19.51 14.29 8.82 14.63 25.00 16.67 18.18 16.00 16.42 13.16 19.15 18.18 10.29 22.92 28.95 8.55 14.81 7.63 10.58 14.04 15.73 14.29 5.26 13.75 12.77 7.14 13.51 11.76 10.99 12.99 14.29 4.67 9.86 17.54 6.94 9.32 16.43 K multi_cassette ens,I_chr3L_4130719_4131120 chr3L - chr3L_4127163_4131120 chr3L_4127163_4129650;chr3L_4129792_4130388;chr3L_4130644_4131120 chr3L_4129651_4129791;chr3L_4130389_4130643 chr3L_4126989_4127162;chr3L_4131121_4131220 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 16.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 K alternative_donor CG30090,RI_chr2R_11577574_11577625 chr2R + chr2R_11577570_11577625 chr2R_11577574_11577625 chr2R_11577626_11577671;chr2R_11577474_11577569 3.63 0.00 3.85 10.81 0.00 3.57 3.12 2.67 3.33 NA 0.00 1.43 4.48 2.94 0.00 2.50 0.00 1.75 3.85 4.35 5.36 4.00 8.70 3.70 7.69 4.88 6.90 NA 5.88 7.14 10.53 3.85 1.64 2.44 0.00 NA 2.56 4.17 7.89 0.00 3.70 4.63 2.78 1.96 5.88 6.38 0.00 2.63 3.92 0.00 5.26 5.00 6.52 2.44 2.17 3.45 2.35 3.85 K alternative_donor CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806425_22809684;chr3R_22806314_22809684 chr3R_22806824_22809684 chr3R_22809685_22809939;chr3R_22806256_22806313 50.52 57.14 46.46 50.52 47.62 37.29 47.75 50.95 62.37 75.00 67.09 73.76 50.00 55.65 48.44 54.26 58.06 36.13 68.00 43.02 38.53 45.28 49.25 52.31 58.14 52.04 51.72 42.86 48.78 44.44 53.33 42.62 42.86 61.14 51.02 36.11 35.00 44.12 43.48 56.18 37.10 56.50 52.94 54.55 59.46 47.06 48.72 56.25 52.55 61.11 42.53 40.91 52.78 66.67 48.03 57.38 34.33 48.89 K jcn_only_AD glo,I_chr3R_7644679_7644739,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7644683_7644880;chr3R_7644683_7644932;chr3R_7644683_7644908;chr3R_7644683_7644743 chr3R_7644683_7644739 chr3R_7644583_7644682;chr3R_7644933_7644980 8.75 8.91 12.24 16.67 20.45 13.16 16.79 15.86 9.15 2.56 24.49 8.82 11.27 16.28 10.68 6.53 15.00 NA 12.24 8.67 14.00 7.04 7.18 15.29 8.43 21.43 7.59 3.17 10.00 3.25 14.17 4.20 6.20 8.07 7.37 2.65 8.05 15.79 10.28 7.88 8.99 8.24 11.29 2.14 7.06 8.59 8.25 6.98 9.77 8.05 12.07 8.57 4.07 10.99 17.14 5.60 7.41 4.55 K intron_retention MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17395228_17397622 chr2R_17395227_17395228;chr2R_17397622_17397623 chr2R_17395018_17395227;chr2R_17397623_17397706 7.41 11.32 0.00 6.90 0.00 7.41 0.00 16.13 6.56 8.00 9.09 14.29 NA 6.67 20.69 14.29 0.00 0.00 NA 7.14 5.26 5.26 8.86 5.94 6.35 0.00 8.57 7.69 6.56 9.62 0.00 11.43 5.08 9.52 3.64 5.66 9.16 6.98 9.09 14.49 8.33 7.58 5.26 7.41 12.82 10.91 6.85 13.16 8.51 5.88 13.85 9.09 0.00 10.00 0.00 5.00 5.68 14.63 K alternative_donor RI_chr3R_7061265_7061322,CG31441,CG31388 chr3R + chr3R_7062215_7062271;chr3R_7062211_7062271 chr3R_7062207_7062271 chr3R_7062272_7063062;chr3R_7062165_7062206 32.58 NA NA 28.57 NA NA 37.50 0.00 31.82 NA NA 33.33 NA NA NA 25.00 NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA 68.75 NA NA 28.57 NA NA NA NA NA NA NA 28.57 NA NA NA NA 44.44 NA 33.33 NA NA NA NA NA 44.44 NA 36.36 NA K alternative_acceptor I_chr2R_9844856_9845327,CG13349,RI_chr2R_9846641_9846709 chr2R - chr2R_9846605_9846709 chr2R_9846641_9846709 chr2R_9846710_9846809;chr2R_9846541_9846604 20.00 16.15 19.23 29.63 17.58 17.24 22.22 31.19 22.70 18.42 16.67 15.92 19.67 32.65 27.27 27.12 20.00 21.79 26.87 21.81 18.67 25.58 17.04 16.87 27.97 36.47 41.53 30.43 41.50 15.95 21.52 21.36 16.96 15.38 17.53 29.57 13.22 14.69 19.40 21.89 25.49 18.27 26.98 26.02 17.06 23.49 19.14 31.62 25.00 13.83 19.08 19.23 15.75 23.44 17.20 19.23 19.68 26.95 K intron_retention CG7414,I_chr3L_21819515_21819581 chr3L + chr3L_21818178_21818349 chr3L_21818177_21818178;chr3L_21818349_21818350 chr3L_21817929_21818177;chr3L_21818350_21819514 0.98 0.80 1.28 2.24 0.00 0.00 2.25 0.45 1.95 0.00 0.00 0.98 0.00 1.00 1.52 0.00 0.99 0.00 0.00 2.01 0.00 4.43 1.07 0.00 2.56 4.11 0.67 2.05 1.97 0.66 3.70 1.43 0.60 1.55 1.95 2.31 0.84 0.52 1.59 1.83 2.18 1.43 0.00 1.35 1.05 0.86 0.70 1.16 0.65 0.78 1.36 0.00 0.00 0.00 2.17 0.73 0.26 0.61 K alternative_acceptor psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6456884_6457578 chr2R_6456884_6457311 chr2R_6456873_6456883;chr2R_6457579_6457647 100.00 80.00 100.00 83.33 NA 75.00 100.00 81.82 100.00 NA NA 100.00 88.89 100.00 80.00 100.00 100.00 100.00 100.00 100.00 NA NA 75.00 NA NA 80.00 NA NA NA NA 66.67 NA NA 88.89 NA NA NA NA NA NA NA 81.82 100.00 NA NA NA NA NA 92.31 NA 100.00 NA NA NA 100.00 NA NA NA K alternative_donor CHKov1,F_chr3R_21149619_21151172 chr3R - chr3R_21149651_21149744 chr3R_21149651_21149718 chr3R_21149588_21149650;chr3R_21149745_21149810 92.98 93.10 84.78 89.47 96.43 88.57 92.71 95.80 89.38 95.35 91.67 93.44 88.14 91.49 89.13 93.26 88.37 95.35 96.36 95.40 85.71 95.56 91.67 96.88 100.00 89.19 90.00 88.46 95.65 100.00 90.41 80.00 82.98 89.81 96.43 83.33 97.44 77.78 85.11 88.06 95.24 93.18 88.89 95.45 94.87 95.92 93.55 92.98 95.06 90.57 94.59 90.91 93.33 100.00 94.64 97.06 92.31 91.18 K intron_retention RI_chrX_7172561_7252693,CG1677 chrX - chrX_7177902_7177973 chrX_7177901_7177902;chrX_7177973_7177974 chrX_7177625_7177901;chrX_7177974_7178791 0.00 0.00 0.00 1.52 0.00 0.00 1.32 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD YT521-B chr3L - chr3L_3373870_3374132 chr3L_3373870_3374018 chr3L_3372970_3373869;chr3L_3374133_3374188 97.92 95.35 98.84 96.67 93.48 100.00 100.00 97.22 93.48 94.00 91.18 97.58 100.00 96.77 94.25 95.41 90.00 98.21 100.00 94.54 97.50 100.00 99.12 97.33 96.25 100.00 98.00 96.00 100.00 100.00 94.53 98.70 98.41 96.49 98.84 98.80 91.53 97.44 96.58 99.36 97.92 97.79 98.28 100.00 98.77 97.53 98.68 100.00 98.51 98.55 100.00 90.74 98.65 100.00 97.78 98.59 97.18 96.72 K intron_retention CG31919,CG33995,F_chr2L_5045484_5046146 chr2L + chr2L_5043384_5045821 chr2L_5043383_5043384;chr2L_5045821_5045822 chr2L_5043377_5043383;chr2L_5045822_5045925 0.00 0.00 0.00 0.72 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.97 3.12 0.00 0.00 0.00 0.00 0.00 0.81 1.03 1.85 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 K intron_retention CG5840 chr3R + chr3R_13361574_13361754 chr3R_13361573_13361574;chr3R_13361754_13361755 chr3R_13361409_13361573;chr3R_13361755_13362420 6.25 NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA 21.43 NA NA NA 6.90 NA NA 22.22 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA 6.25 NA NA 14.29 NA 0.00 NA NA NA 6.25 NA NA 3.23 NA 10.53 NA NA NA 12.50 NA NA 5.56 K alternative_acceptor CG31068 chr3R + chr3R_23061584_23061627;chr3R_23061584_23061636 chr3R_23061584_23061639 chr3R_23061427_23061583;chr3R_23061640_23061706 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4842231_4843022 chrX_4842230_4842231;chrX_4843022_4843023 chrX_4842134_4842230;chrX_4843023_4843701 21.50 11.11 11.11 44.83 8.70 6.90 24.14 17.14 14.93 40.00 9.52 18.60 38.46 11.76 15.38 24.14 20.69 38.89 14.81 30.30 22.73 41.38 30.56 11.11 40.00 0.00 22.58 33.33 5.26 28.57 30.30 NA 39.29 20.00 28.57 23.53 24.56 20.59 8.57 16.67 40.00 12.77 6.67 25.00 41.67 15.00 14.29 36.36 21.95 0.00 12.77 21.05 NA NA 23.33 NA NA 28.57 K intron_retention CG3714,I_chr2L_4190825_4191774,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,I_chr2L_4196780_4197306,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4196780_4197951 chr2L_4196779_4196780;chr2L_4197951_4197952 chr2L_4196715_4196779;chr2L_4197952_4197963 88.19 NA NA 90.91 NA NA 90.48 66.67 NA NA NA 87.50 NA NA NA 73.33 NA NA NA 54.55 NA NA NA NA NA NA NA NA NA NA NA NA NA 81.82 NA 90.91 NA NA NA 88.89 NA 90.00 NA 88.89 NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA N jcn_only_AA Lag1,I_chrX_6152540_6152929,RI_chrX_6153758_6161036,I_chrX_6160907_6161036 chrX - chrX_6152540_6152682 chrX_6152584_6152682 chrX_6152683_6152827;chrX_6152440_6152539 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette p120ctn,I_chr2R_482968_494268,I_chr2R_487593_493262 chr2R + chr2R_482968_494268 chr2R_482968_486373;chr2R_486654_486773;chr2R_487426_487488;chr2R_487593_494268 chr2R_486374_486653;chr2R_486774_487425;chr2R_487489_487592 chr2R_482868_482967;chr2R_494269_494368 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 83.33 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 60.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 K alternative_donor RpL32,I_chr3R_25871509_25871807 chr3R - chr3R_25871509_25871851;chr3R_25871509_25871771;chr3R_25871509_25871583;chr3R_25871509_25871855 chr3R_25871509_25871611 chr3R_25871409_25871508;chr3R_25871856_25871862 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.12 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.06 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG10602 chr2L - chr2L_18857404_18857541;chr2L_18857404_18857511 chr2L_18857404_18857587 chr2L_18857177_18857403;chr2L_18857588_18857700 85.27 92.50 86.11 90.38 97.50 82.35 85.19 89.06 88.00 NA 85.29 89.06 NA 93.18 69.77 87.50 84.78 84.38 89.58 90.91 80.00 84.85 91.53 89.47 83.87 90.32 90.00 97.50 74.29 90.00 85.00 69.57 59.38 85.25 66.67 71.43 93.33 96.67 94.74 80.34 79.31 89.29 75.00 83.33 78.57 83.87 91.67 70.69 93.42 90.00 84.85 89.58 89.29 NA 81.48 81.25 83.72 73.08 K multi_cassette CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21275807_21281131 chr2L_21275807_21277277;chr2L_21278430_21279883;chr2L_21280448_21281131 chr2L_21277278_21278429;chr2L_21279884_21280447 chr2L_21275724_21275806;chr2L_21281132_21281337 3.70 0.00 3.23 13.95 5.00 4.17 5.26 2.17 3.17 6.25 3.57 2.13 3.57 6.45 3.33 1.72 5.26 6.90 2.94 4.00 3.85 5.00 4.65 3.23 7.14 4.76 2.38 3.70 8.00 2.56 3.70 3.03 4.76 2.08 3.45 22.22 4.17 10.53 3.57 0.84 2.78 1.82 4.35 2.17 4.17 2.94 2.94 4.65 1.92 3.92 2.13 3.85 7.69 4.35 2.94 2.94 3.23 5.77 K intron_retention CG14446 chrX + chrX_6120254_6120472 chrX_6120253_6120254;chrX_6120472_6120473 chrX_6119667_6120253;chrX_6120473_6120737 7.69 NA NA NA NA 14.29 NA 14.29 0.00 NA NA 6.90 NA NA 14.29 NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA 7.69 0.00 7.69 0.00 NA NA NA 0.00 0.00 NA 13.33 NA NA NA NA 0.00 NA 11.76 NA 7.14 K intron_retention CG31650,RI_chr2L_5041540_5042490,I_chr2L_5042888_5042983,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5041837_5042490 chr2L_5041836_5041837;chr2L_5042490_5042491 chr2L_5041689_5041836;chr2L_5042491_5042590 0.00 0.00 0.91 2.08 0.00 0.00 1.75 1.52 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 1.16 0.00 1.79 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 1.82 0.00 K intron_retention Pka-R1,CG3288 chr3L + chr3L_20826758_20826829 chr3L_20826757_20826758;chr3L_20826829_20826830 chr3L_20826383_20826757;chr3L_20826830_20826969 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention LIMK1,I_chrX_12488942_12489000 chrX - chrX_12484518_12485963 chrX_12484517_12484518;chrX_12485963_12485964 chrX_12483874_12484517;chrX_12485964_12486193 0.00 0.00 6.25 2.08 0.00 0.00 2.27 4.76 0.00 0.00 0.00 0.00 5.56 0.00 2.38 0.00 3.03 2.86 0.00 3.39 0.00 7.50 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 NA 0.00 2.94 0.00 0.00 1.96 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K intron_retention CG9065,I_chrX_14978317_14978385 chrX - chrX_14978299_14978385 chrX_14978298_14978299;chrX_14978385_14978386 chrX_14978217_14978298;chrX_14978386_14978485 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 1.04 0.00 0.00 0.00 0.00 2.78 0.00 2.26 7.14 0.00 0.00 0.00 0.48 0.00 0.00 0.00 1.71 0.00 0.00 1.46 0.00 0.00 0.00 0.00 0.45 0.00 1.42 0.00 0.00 1.03 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Eip63E,I_chr3L_3607397_3607501 chr3L + chr3L_3578481_3593328 chr3L_3578481_3588041 chr3L_3578289_3578480 55.38 66.67 46.67 81.97 58.54 63.41 16.49 54.24 58.45 32.00 55.56 71.43 67.74 66.67 46.81 55.38 61.70 62.50 65.00 74.55 47.06 47.56 66.67 58.06 46.15 45.00 57.95 49.32 51.61 61.11 54.55 50.00 40.00 62.50 60.47 36.71 61.43 68.75 55.29 24.53 48.65 55.21 58.82 60.82 23.64 51.72 53.33 48.24 49.41 57.14 45.33 51.61 39.47 66.67 56.41 62.22 58.33 42.59 K multi_cassette CG11299,noncoding_8970,I_chr2R_19602423_19609308,I_chr2R_19619053_19619186 chr2R + chr2R_19601642_19616571 chr2R_19601642_19602229;chr2R_19602423_19609732;chr2R_19610399_19616571 chr2R_19602230_19602422;chr2R_19609733_19610398 chr2R_19601628_19601641;chr2R_19616572_19616757 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 90.91 100.00 100.00 100.00 100.00 K intron_retention Inos,I_chr2R_3344353_3345211,noncoding_4874 chr2R - chr2R_3343582_3343653 chr2R_3343581_3343582;chr2R_3343653_3343654 chr2R_3343339_3343581;chr2R_3343654_3344352 0.57 0.52 0.42 0.92 0.59 0.73 0.54 0.98 0.74 0.34 0.58 0.53 0.51 0.83 1.20 0.93 1.10 0.43 0.70 0.46 0.57 0.79 0.66 0.52 0.35 0.68 1.10 1.28 0.84 0.58 0.90 0.00 0.60 0.88 0.65 0.50 0.45 0.23 0.47 0.82 0.00 0.76 0.47 0.17 0.57 0.35 0.53 0.00 1.02 0.76 0.42 0.56 0.40 0.42 0.50 0.56 0.56 1.30 K intron_retention Syx5,fzy chr2L + chr2L_16308330_16308397 chr2L_16308329_16308330;chr2L_16308397_16308398 chr2L_16307620_16308329;chr2L_16308398_16309274 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.49 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG10737 chr2R + chr2R_15062754_15063770;chr2R_15062754_15063692 chr2R_15062754_15063752 chr2R_15062592_15062753;chr2R_15063771_15063852 5.75 7.69 8.77 10.87 7.32 0.00 13.64 3.39 8.47 2.50 3.64 6.10 2.78 3.85 1.47 16.00 2.27 5.45 2.22 8.70 13.89 15.05 4.31 2.78 2.17 4.17 3.41 8.57 1.64 6.45 4.08 1.75 38.71 13.33 8.89 2.00 5.75 8.14 4.63 6.90 0.00 8.51 13.79 2.11 15.87 1.05 2.47 8.70 8.49 4.55 5.15 8.00 7.35 6.06 3.64 10.53 4.76 7.26 K alternative_acceptor CG32809,I_chrX_1576815_1577129,I_chrX_1577031_1577129,CEI_chrX_1579569_1579679,RI_chrX_1585391_1586471,I_chrX_1589508_1589564 chrX - chrX_1571099_1571167 chrX_1571112_1571167 chrX_1571168_1571350;chrX_1570956_1571098 2.33 0.00 0.00 4.76 NA 0.00 5.88 0.00 4.65 3.33 0.00 0.00 NA 7.14 0.00 NA 0.00 NA 5.26 0.00 NA 1.59 3.03 3.23 0.00 0.00 0.00 0.00 2.63 1.72 0.00 2.70 2.47 3.85 6.25 2.56 2.50 9.52 1.82 2.27 3.23 2.22 NA 0.00 2.00 0.00 3.85 1.98 3.45 NA 2.78 NA NA 5.00 5.56 4.17 NA 2.33 K intron_retention UbcD6,RI_chr3R_776749_776832 chr3R - chr3R_776475_776590 chr3R_776474_776475;chr3R_776590_776591 chr3R_776189_776474;chr3R_776591_776659 12.91 NA NA 19.05 NA NA 13.33 16.67 10.53 NA NA 23.81 NA NA NA 8.33 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention CG32803,I_chrX_1795047_1795115,RI_chrX_1795648_1795745,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1795047_1795097 chrX_1795046_1795047;chrX_1795097_1795098 chrX_1794947_1795046;chrX_1795098_1795310 0.00 1.89 0.00 4.17 0.00 0.00 3.77 0.00 3.95 0.00 0.00 4.60 2.56 2.70 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 1.37 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 3.57 0.00 4.44 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 2.94 0.00 K intron_retention I_chr2L_19388570_19389922,CG17544 chr2L - chr2L_19391220_19391437 chr2L_19391219_19391220;chr2L_19391437_19391438 chr2L_19390567_19391219;chr2L_19391438_19391783 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Mcm3 chrX + chrX_5219686_5219762 chrX_5219686_5219759 chrX_5219452_5219685;chrX_5219763_5220771 100.00 96.30 95.65 100.00 100.00 100.00 95.24 100.00 98.11 93.75 100.00 100.00 100.00 100.00 96.15 96.43 100.00 100.00 100.00 98.25 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 93.75 100.00 94.12 100.00 94.74 94.12 98.08 100.00 97.67 100.00 100.00 97.96 100.00 100.00 100.00 100.00 96.67 94.12 100.00 100.00 100.00 100.00 92.86 100.00 92.31 100.00 100.00 100.00 K alternative_donor CG5789,I_chr3R_20367314_20369052,I_chr3R_20367337_20369421 chr3R - chr3R_20367314_20369421 chr3R_20367314_20369052 chr3R_20367237_20367313;chr3R_20369422_20369521 0.83 1.89 1.52 1.61 0.00 0.00 2.11 0.83 0.56 2.50 2.33 1.83 1.61 2.27 0.00 0.00 0.00 0.00 0.00 0.83 1.67 1.19 1.59 2.56 6.25 1.79 1.82 2.86 5.45 0.00 2.94 0.00 0.78 1.71 0.00 2.38 0.00 2.70 0.00 1.85 0.00 2.21 0.00 5.08 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 NA 1.28 0.00 0.00 0.00 K jcn_only_AD CaMKI,I_chr4_466377_467726,I_chr4_467862_471815,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_466592_467726;chr4_466275_467726;chr4_466377_467726;chr4_466798_467726;chr4_467273_467726 chr4_467662_467726 chr4_467727_467826;chr4_466269_466274 96.27 90.00 NA 83.87 NA 95.00 100.00 94.55 97.06 NA NA 94.59 100.00 95.24 NA 95.00 95.65 NA 100.00 96.88 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 93.94 95.00 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K multi_cassette Vha100-1,I_chr3R_24958227_24960770,RI_chr3R_24959152_24959582,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24958227_24960770 chr3R_24958227_24959582;chr3R_24959684_24960278;chr3R_24960321_24960770 chr3R_24959583_24959683;chr3R_24960279_24960320 chr3R_24958127_24958226;chr3R_24960771_24960870 50.00 55.56 NA 69.23 NA 55.56 60.00 71.43 66.67 NA 100.00 97.62 NA 83.33 70.00 50.00 NA 75.00 NA 63.64 77.78 20.00 55.00 50.00 36.36 66.67 25.00 NA 33.33 37.50 29.63 50.00 40.00 55.56 50.00 69.23 42.11 44.44 50.00 20.00 44.44 58.82 NA 50.00 63.64 45.45 45.45 37.50 73.33 36.36 43.75 33.33 50.00 NA 85.71 50.00 55.56 71.43 K intron_retention Csat chrX - chrX_2596809_2597320 chrX_2596808_2596809;chrX_2597320_2597321 chrX_2595150_2596808;chrX_2597321_2597440 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 1.27 0.00 0.00 2.56 4.17 0.00 0.00 4.65 0.00 0.00 0.00 2.22 0.00 2.02 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA orb2,I_chr3L_8942860_8947477 chr3L - chr3L_8937621_8940927 chr3L_8939541_8940927 chr3L_8940928_8940989;chr3L_8935392_8937620 87.50 92.31 86.49 70.00 83.33 86.67 86.84 83.87 81.25 NA NA 97.44 88.00 NA 88.24 93.48 86.36 100.00 93.55 89.71 NA 82.35 87.50 92.16 80.00 85.19 89.58 85.45 83.93 65.96 87.50 97.44 70.91 89.80 89.58 86.67 67.39 66.67 87.50 86.96 96.92 85.48 88.00 70.37 96.61 95.74 90.74 89.87 90.38 98.31 81.82 76.67 83.33 98.44 96.97 95.35 93.75 99.08 K alternative_donor lin chr2R + chr2R_4802513_4802569;chr2R_4802509_4802569 chr2R_4802505_4802569 chr2R_4802570_4805741;chr2R_4802033_4802504 15.38 17.65 15.38 13.33 11.11 0.00 9.09 18.75 20.69 11.11 9.09 14.81 8.33 8.33 23.53 8.33 11.11 11.11 11.11 20.59 21.43 25.00 22.58 16.00 20.00 7.69 32.14 21.05 22.22 14.29 0.00 22.22 22.22 30.43 5.88 6.25 21.43 26.09 13.16 6.45 18.75 13.33 11.11 21.05 13.33 18.18 30.77 17.86 14.29 26.67 15.38 8.33 7.69 30.77 26.32 13.33 20.00 22.22 K cassette Adk1,I_chr3L_12194597_12195884,I_chr3L_12194963_12195884,I_chr3L_12197507_12197558 chr3L - chr3L_12194597_12196818 chr3L_12194597_12194878;chr3L_12194963_12196818 chr3L_12194879_12194962 chr3L_12194497_12194596;chr3L_12196819_12197320 0.00 0.00 NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 4.35 0.00 0.00 NA 0.00 0.00 0.00 2.50 0.00 K intron_retention lig,CI_chr2R_3962006_3962916,I_chr2R_3962357_3962977,RI_chr2R_3962875_3962977 chr2R + chr2R_3961910_3962977 chr2R_3961909_3961910;chr2R_3962977_3962978 chr2R_3961906_3961909;chr2R_3962978_3963016 96.00 93.80 96.47 92.72 89.74 94.81 95.83 96.77 92.89 95.65 93.85 92.71 94.03 92.65 91.86 97.92 98.46 97.33 97.33 99.03 89.39 96.24 96.82 95.12 96.83 95.31 92.31 72.28 84.54 96.24 97.44 95.19 98.73 95.30 99.01 92.91 96.36 95.91 97.45 96.56 94.02 95.92 98.36 97.54 94.85 97.66 98.73 96.82 95.41 98.75 96.83 98.84 96.00 98.45 93.10 95.65 96.12 97.54 K jcn_only_AD RpL31,CG1827 chr2R + chr2R_5474844_5474951;chr2R_5474789_5474951 chr2R_5474734_5474951 chr2R_5474952_5475211;chr2R_5474727_5474733 96.12 96.12 93.52 98.09 96.19 96.25 86.34 96.17 94.38 96.22 94.42 94.42 92.62 87.10 98.63 93.55 96.76 95.59 96.51 96.74 95.33 98.76 93.95 96.54 99.08 96.56 75.51 96.54 91.47 97.16 93.02 98.05 99.17 96.83 95.71 89.87 92.84 93.55 92.65 98.80 96.48 98.27 97.17 94.98 98.66 95.20 90.51 97.03 95.83 96.89 89.77 94.76 96.85 72.46 98.00 90.77 93.11 97.86 K alternative_donor spn-A,I_chr3R_25881521_25881590 chr3R - chr3R_25881521_25881590 chr3R_25881521_25881583 chr3R_25881421_25881520;chr3R_25881591_25881690 98.21 94.44 97.22 97.78 94.12 97.06 97.22 100.00 97.73 100.00 92.86 100.00 100.00 95.83 100.00 97.73 100.00 100.00 96.67 98.70 100.00 94.74 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 97.50 97.50 100.00 97.96 100.00 100.00 100.00 92.31 96.77 97.78 96.55 98.39 100.00 95.00 97.50 97.87 100.00 98.21 100.00 100.00 96.30 92.31 92.86 93.33 100.00 100.00 100.00 98.18 K jcn_only_AD mbf1,RI_chr3L_16567888_16567952,RI_chr3L_16568077_16568816 chr3L + chr3L_16567888_16567952;chr3L_16567770_16567952 chr3L_16567853_16567952 chr3L_16567953_16568052;chr3L_16567701_16567769 98.34 98.71 98.94 96.86 99.55 99.19 97.53 98.31 98.90 98.25 96.95 96.80 96.86 98.09 98.34 99.17 97.74 98.71 99.36 98.11 99.41 94.59 99.56 98.59 93.91 99.21 99.31 99.50 95.02 98.56 97.95 97.44 96.06 98.86 93.64 98.41 97.37 97.44 98.39 98.34 94.02 97.44 98.57 98.25 96.22 97.78 96.02 96.00 98.47 99.57 100.00 96.69 98.73 99.05 98.96 98.18 99.38 99.17 K intron_retention l(2)k14505,I_chr2L_21275807_21277205 chr2L + chr2L_21261335_21261411 chr2L_21261334_21261335;chr2L_21261411_21261412 chr2L_21261217_21261334;chr2L_21261412_21261719 0.00 0.00 0.00 0.00 0.00 0.00 2.86 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 1.56 0.00 0.00 0.00 2.42 0.00 2.13 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 1.89 2.11 0.00 0.00 2.17 1.03 0.00 0.00 2.47 0.00 0.00 0.00 1.00 K mutually_exclusive CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8174699_8175994,chr2L_8176052_8176572 chr2L_8174699_8175175,chr2L_8175398_8176572 chr2L_8175995_8176051 chr2L_8175176_8175397 chr2L_8174536_8174698;chr2L_8176573_8176806 1.05 2.08 0.00 1.00 0.00 0.00 1.89 1.05 1.49 2.50 0.00 0.88 0.00 0.00 0.00 0.00 1.19 0.00 1.85 0.76 0.00 4.05 1.39 0.00 2.94 0.00 4.00 3.23 3.03 2.90 0.00 0.00 1.72 0.00 0.00 4.35 1.12 1.67 4.69 1.61 0.00 0.92 2.17 1.43 7.69 0.00 0.00 1.72 0.92 2.70 1.72 2.27 0.00 0.00 1.28 0.00 5.26 0.00 K intron_retention CG14480,I_chr2R_13452834_13452892 chr2R + chr2R_13452830_13452892 chr2R_13452829_13452830;chr2R_13452892_13452893 chr2R_13452734_13452829;chr2R_13452893_13452992 5.88 0.00 4.35 8.33 0.00 0.00 9.52 8.11 4.48 0.00 15.15 12.50 8.33 0.00 5.26 8.00 0.00 0.00 5.71 8.47 6.06 13.79 5.26 5.00 10.00 11.11 3.85 10.00 9.09 0.00 12.20 7.27 1.52 5.26 4.55 8.33 9.52 4.17 3.85 4.76 0.00 6.67 15.38 7.50 0.00 8.82 4.88 5.56 7.27 6.38 8.33 0.00 7.50 6.06 6.90 5.88 3.51 5.79 K jcn_only_AD Dscam,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3249373_3250528;chr2R_3249373_3251682;chr2R_3249373_3254309;chr2R_3249373_3253447;chr2R_3249373_3252522;chr2R_3249373_3252236;chr2R_3249373_3252816;chr2R_3249373_3253970;chr2R_3249373_3250836;chr2R_3249373_3251960 chr2R_3249373_3251099 chr2R_3249273_3249372 2.44 3.57 2.13 4.69 8.00 3.23 0.00 0.00 6.10 0.00 NA 7.35 5.41 5.88 2.44 1.89 0.00 0.00 0.00 2.22 8.00 3.75 8.57 13.89 2.13 0.00 8.11 6.45 3.57 3.53 1.96 3.57 3.75 1.82 0.00 4.76 7.27 2.63 0.00 0.00 0.00 1.54 3.12 0.00 0.00 2.63 4.17 2.33 0.00 NA 2.22 5.00 3.23 NA 1.92 0.00 NA 2.17 K intron_retention zip,I_chr2R_20878796_20879147 chr2R - chr2R_20889968_20893390 chr2R_20889967_20889968;chr2R_20893390_20893391 chr2R_20889811_20889967;chr2R_20893391_20893606 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.26 0.21 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.44 0.00 0.00 0.27 0.55 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6904,I_chr3R_10970962_10971422,I_chr3R_10970962_10972151,I_chr3R_10970962_10972185,I_chr3R_10970962_10972512,I_chr3R_10970962_10972522 chr3R - chr3R_10970962_10971039 chr3R_10970961_10970962;chr3R_10971039_10971040 chr3R_10970862_10970961;chr3R_10971040_10971059 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Tango9,RI_chr3R_7800180_7800239 chr3R - chr3R_7800180_7800267 chr3R_7800180_7800239 chr3R_7800080_7800179;chr3R_7800268_7800339 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.23 0.00 0.00 2.50 NA 0.00 8.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 5.00 7.32 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 4.35 NA NA 0.00 NA 0.00 0.00 0.00 NA 6.25 3.45 0.00 NA K alternative_donor CG17600 chrX + chrX_21942714_21942775 chrX_21942723_21942775 chrX_21942776_21942904;chrX_21942596_21942713 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 1.92 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1317 chr3L - chr3L_2368426_2368620 chr3L_2368425_2368426;chr3L_2368620_2368621 chr3L_2368013_2368425;chr3L_2368621_2370048 92.31 NA 92.31 96.55 NA NA 100.00 90.48 100.00 90.91 NA 80.00 NA 100.00 90.91 94.44 NA NA 92.31 91.30 NA 69.23 90.91 90.00 NA 100.00 92.31 100.00 94.74 100.00 93.33 95.45 92.31 92.86 87.50 94.74 NA NA 77.78 95.45 96.30 88.89 NA 90.00 93.10 97.50 NA 96.08 94.74 90.00 84.62 87.50 NA 87.50 91.67 90.00 90.00 95.12 K jcn_only_AD cryptocephal,noncoding_4181,I_chr2L_21311307_21311752,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21311033_21311752;chr2L_21311307_21311752;chr2L_21311532_21311752 chr2L_21311215_21311752 chr2L_21311753_21311852;chr2L_21310948_21311032 0.24 0.00 0.37 0.12 0.00 0.15 0.17 0.13 0.06 0.00 0.21 0.11 0.10 0.12 0.00 0.36 0.14 0.00 0.24 0.39 0.35 0.00 0.00 0.24 0.25 0.00 0.38 0.73 0.61 0.75 0.08 0.39 0.71 0.15 0.00 0.61 0.00 0.00 1.22 1.32 0.26 0.13 0.24 0.36 1.02 0.48 0.00 0.52 0.34 0.25 0.69 0.29 0.47 0.37 0.09 0.26 0.24 0.38 K jcn_only_AD akirin,I_chr3L_7363173_7364806,I_chr3L_7363177_7364806,I_chr3L_7363177_7364831,I_chr3L_7363211_7364831,I_chr3L_7363731_7364806,I_chr3L_7364126_7364806,RI_chr3L_7364737_7364806 chr3L + chr3L_7363211_7364831;chr3L_7363169_7364831 chr3L_7363177_7364831 chr3L_7364832_7364906;chr3L_7363111_7363168 2.27 NA NA NA NA NA NA 4.55 2.50 NA NA 0.00 0.00 0.00 NA 0.00 NA NA NA 6.45 NA 0.00 2.38 0.00 NA NA NA 0.00 NA 0.00 0.00 NA 3.08 8.00 NA NA 4.00 NA NA 2.78 NA 0.00 NA NA NA 4.76 NA NA 2.17 2.44 4.55 NA NA NA NA NA NA NA K jcn_only_AD RpS11,I_chr2R_8087545_8087625,I_chr2R_8087545_8087698,I_chr2R_8087747_8088193 chr2R - chr2R_8087545_8087698 chr2R_8087545_8087625 chr2R_8087476_8087544 98.84 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 97.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette PMCA,I_chr4_371836_372509,I_chr4_373671_374568,I_chr4_374602_374976,I_chr4_376108_379519 chr4 - chr4_373217_374976 chr4_373217_374568;chr4_374605_374976 chr4_374569_374604 chr4_372807_373216;chr4_374977_375076 100.00 100.00 100.00 100.00 95.45 96.77 96.43 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 97.06 100.00 87.50 100.00 97.73 100.00 100.00 100.00 100.00 96.15 100.00 95.45 100.00 100.00 95.83 100.00 96.30 100.00 91.67 100.00 100.00 98.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 K alternative_acceptor CG42507,Trl,I_chr3L_14745733_14745798,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14744876_14745798 chr3L_14745733_14745798 chr3L_14745799_14745836;chr3L_14744367_14744875 60.77 60.00 42.86 55.56 NA 25.00 71.43 66.67 61.54 16.67 NA 77.78 100.00 62.50 66.67 59.09 NA 50.00 37.50 69.23 NA 44.44 83.33 50.00 66.67 42.86 50.00 66.67 75.00 60.00 42.86 66.67 33.33 70.00 50.00 88.89 75.00 50.00 50.00 100.00 33.33 42.86 50.00 75.00 NA 80.00 40.00 50.00 72.73 66.67 55.56 42.86 100.00 75.00 66.67 75.00 80.00 20.00 K intron_retention DhpD chr3R - chr3R_54711_54766 chr3R_54710_54711;chr3R_54766_54767 chr3R_54450_54710;chr3R_54767_54963 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 10.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 1.32 0.00 0.00 0.00 0.00 4.08 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor cnc,I_chr3R_19014852_19016738,I_chr3R_19046366_19046507,I_chr3R_19046619_19047567 chr3R - chr3R_19035606_19043600 chr3R_19035606_19035704 chr3R_19035330_19035605;chr3R_19043601_19044848 5.71 8.33 11.11 9.76 5.26 4.76 8.33 9.52 10.00 3.70 18.18 10.42 17.65 17.65 6.06 12.50 9.09 10.00 7.41 14.29 14.29 2.35 5.26 3.45 4.76 8.33 4.44 8.00 3.77 2.70 5.88 3.45 1.49 11.11 3.70 2.70 1.92 6.25 4.35 2.38 2.70 11.11 12.50 3.64 3.23 3.23 5.26 2.90 8.16 7.14 5.71 5.56 4.76 6.25 5.00 5.56 6.67 2.56 K intron_retention ci,CI_chr4_71240_71370 chr4 - chr4_72071_72124 chr4_72070_72071;chr4_72124_72125 chr4_71940_72070;chr4_72125_72577 100.00 NA NA 100.00 100.00 NA 93.33 95.24 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 95.65 NA NA 100.00 NA NA NA NA NA NA NA 88.89 NA NA 94.74 NA NA NA NA NA 100.00 NA 95.83 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA 91.67 NA NA NA K intron_retention quemao,I_chr3L_7341776_7344368 chr3L + chr3L_7345199_7345334 chr3L_7345198_7345199;chr3L_7345334_7345335 chr3L_7345071_7345198;chr3L_7345335_7345833 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 1.52 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RI_chr3R_5165997_5180143,CG33936,noncoding_15544,I_chr3R_5167726_5180143,RI_chr3R_5183458_5183705 chr3R + chr3R_5167648_5167941;chr3R_5167726_5167941 chr3R_5167693_5167941 chr3R_5167942_5167998;chr3R_5167626_5167647 17.98 21.92 NA 18.82 NA 16.67 NA 10.37 10.06 11.54 25.00 21.53 13.48 11.58 36.05 15.25 25.00 24.66 17.95 19.27 NA NA 12.37 19.27 21.79 20.79 23.47 42.47 7.84 9.68 25.24 32.35 12.50 24.80 6.67 11.11 NA 32.91 15.00 10.23 11.11 18.00 6.85 9.58 25.00 7.41 NA 10.17 11.04 20.00 6.82 26.50 28.57 13.79 17.39 29.58 30.38 21.57 K alternative_donor CG34449,RI_chrX_9232665_9233022,noncoding_22771,RI_chrX_9249209_9250033,RI_chrX_9249212_9250019,RI_chrX_9249212_9250033,RI_chrX_9249212_9250244 chrX - chrX_9249209_9250147 chrX_9249209_9250033 chrX_9249112_9249208;chrX_9250148_9250168 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA 100.00 K alternative_acceptor eIF4G,RI_chr4_945640_945708,I_chr4_945765_946199,I_chr4_948813_950447 chr4 - chr4_941826_945708 chr4_945640_945708 chr4_945709_945763;chr4_939529_941825 0.00 0.00 0.81 0.77 0.00 0.97 0.37 0.82 0.31 0.00 0.86 0.37 1.75 0.66 0.00 0.80 0.68 1.00 0.57 0.41 0.00 1.23 0.76 0.00 1.32 0.00 0.78 1.16 0.00 0.00 0.61 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.40 0.76 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 K intron_retention tra2,I_chr2R_10491279_10491488,REFI_chr2R_10491644_10491701 chr2R - chr2R_10491007_10491488 chr2R_10491006_10491007;chr2R_10491488_10491489 chr2R_10490853_10491006;chr2R_10491489_10491563 4.52 8.33 0.00 2.00 0.00 0.00 4.35 7.69 9.26 5.71 0.00 8.06 NA 0.00 0.00 10.71 5.88 0.00 9.52 5.63 0.00 11.11 3.64 10.53 5.71 12.50 2.86 9.68 12.24 0.00 0.00 0.00 3.57 NA 0.00 0.00 4.84 4.55 3.23 7.37 7.81 4.48 NA 9.09 3.03 5.63 6.38 0.00 6.94 0.00 6.82 12.00 9.30 3.77 0.00 4.35 4.55 1.98 K alternative_acceptor mub,RI_chr3L_21901021_21901163,I_chr3L_21908756_21909179 chr3L + chr3L_21908110_21908213 chr3L_21908110_21908201 chr3L_21907993_21908109;chr3L_21908214_21908295 60.52 55.00 62.50 71.43 52.38 68.75 58.62 55.56 60.42 72.73 53.33 70.37 50.00 60.87 50.00 54.05 50.00 63.64 99.31 70.00 52.63 68.18 50.00 62.50 70.00 73.33 66.67 NA 66.67 43.75 67.86 NA 52.63 60.61 77.78 68.75 58.82 69.23 63.16 61.54 NA 50.00 57.14 84.62 NA 56.25 58.33 57.14 63.16 45.45 45.45 71.43 NA 60.00 60.87 46.67 30.00 55.56 K intron_retention Rox8,I_chr3R_19872211_19872659,I_chr3R_19876189_19876240 chr3R - chr3R_19869850_19869918 chr3R_19869849_19869850;chr3R_19869918_19869919 chr3R_19869258_19869849;chr3R_19869919_19870012 4.11 5.31 5.06 10.19 5.00 2.90 5.48 2.30 4.23 6.49 6.78 3.85 1.56 3.28 4.76 3.70 0.00 2.80 2.94 4.08 2.99 5.00 4.09 4.90 3.00 2.56 6.67 9.90 5.10 4.76 4.69 6.35 5.95 3.12 4.11 4.35 2.53 2.61 4.12 6.25 7.55 3.61 3.57 5.36 3.97 4.04 2.52 6.90 3.15 2.50 4.55 0.00 2.73 4.55 2.08 4.44 2.60 7.69 K alternative_donor RpS19a chrX + chrX_16531961_16532265 chrX_16531983_16532265 chrX_16532266_16532336;chrX_16531912_16531960 2.22 2.95 2.46 1.47 3.24 2.58 7.35 1.90 3.60 1.85 3.36 3.52 5.85 5.29 2.23 5.66 2.54 3.60 2.71 1.97 3.70 1.25 1.47 2.50 2.22 2.98 3.51 1.81 2.70 1.04 2.92 1.26 0.99 2.20 2.13 1.43 7.32 1.27 1.68 0.65 1.88 1.88 3.59 1.18 1.08 1.68 2.86 1.41 2.16 4.65 1.64 3.08 0.80 1.67 1.95 4.40 4.71 1.20 K jcn_only_AA Trap1 chr2R - chr2R_2521435_2521515;chr2R_2521454_2521515 chr2R_2521438_2521515 chr2R_2521516_2521564;chr2R_2521152_2521434 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 1.10 2.74 0.00 0.00 0.59 3.33 0.00 0.00 0.00 1.92 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.79 0.00 0.00 0.76 0.00 0.00 K intron_retention HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13165623_13166434 chrX_13165622_13165623;chrX_13166434_13166435 chrX_13165515_13165622;chrX_13166435_13166489 14.98 NA NA 34.78 NA NA 11.76 19.44 9.68 NA NA 10.00 NA 26.32 13.33 18.92 NA NA 25.00 10.53 NA NA 21.43 NA NA NA NA NA 20.00 NA NA NA NA 24.14 22.22 NA NA NA NA 4.17 NA 21.43 0.00 8.33 NA NA NA 11.76 15.15 NA 5.00 NA NA NA 14.81 NA NA NA K alternative_donor CG8908,I_chr2R_16158045_16158109 chr2R + chr2R_16157528_16158109 chr2R_16158045_16158109 chr2R_16158110_16158209;chr2R_16156652_16157527 9.54 NA 7.14 NA NA NA 10.00 42.86 26.09 NA NA 18.75 9.09 16.67 14.29 10.00 NA 0.00 10.00 12.20 NA 4.76 6.67 10.00 NA NA NA NA NA NA 7.41 0.00 0.00 16.67 NA 0.00 NA NA 4.76 8.33 NA 7.14 NA NA 0.00 8.70 NA 0.00 14.29 5.56 7.69 NA NA 10.00 14.29 18.18 15.38 18.18 K intron_retention CG32016,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_974853_975114 chr4_974852_974853;chr4_975114_975115 chr4_974753_974852;chr4_975115_975489 0.00 0.00 0.00 9.52 NA 0.00 0.00 0.00 3.57 NA 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 3.70 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 4.08 0.00 0.00 NA NA 0.00 0.00 NA 2.86 0.00 0.00 NA 0.00 0.00 NA 2.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA K intron_retention Dsp1,I_chrX_16231287_16231413 chrX + chrX_16231043_16231118 chrX_16231042_16231043;chrX_16231118_16231119 chrX_16230884_16231042;chrX_16231119_16231282 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.02 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.43 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG33129,I_chr2L_10966410_10967142,noncoding_2515,I_chr2L_10966622_10967108 chr2L - chr2L_10966622_10968104 chr2L_10966621_10966622;chr2L_10968104_10968105 chr2L_10966522_10966621;chr2L_10968105_10968152 54.55 NA NA 70.00 NA NA NA NA 40.00 NA NA NA NA NA NA 54.55 NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA 70.00 NA NA NA NA NA NA 47.06 NA NA NA NA NA NA NA NA NA K alternative_donor CG42568,RI_chr2R_20046540_20046671,RI_chr2R_20046609_20046675,RI_chr2R_20046743_20046821 chr2R - chr2R_20046609_20046667;chr2R_20046609_20046671 chr2R_20046609_20046675 chr2R_20046509_20046608;chr2R_20046676_20046742 11.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG6656,CG33092 chr3R + chr3R_17702621_17702717 chr3R_17702620_17702621;chr3R_17702717_17702718 chr3R_17702483_17702620;chr3R_17702718_17703109 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 NA 0.00 2.90 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.74 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.08 0.00 0.00 3.70 3.85 NA 0.00 0.00 0.00 0.00 NA 4.00 0.00 0.00 0.00 0.00 1.96 0.00 2.15 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 1.67 K jcn_only_AD CG1553 chr2R - chr2R_3692444_3692926 chr2R_3692444_3692605 chr2R_3691017_3692443;chr2R_3692927_3693071 4.00 NA NA NA NA NA NA 7.41 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 4.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 8.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD Karybeta3,I_chr3R_475924_476306,I_chr3R_476219_476306 chr3R + chr3R_475490_476306 chr3R_476219_476306 chr3R_476307_476406;chr3R_475064_475489 0.18 0.29 0.00 0.16 0.00 0.00 0.23 0.00 0.29 0.37 0.39 0.26 0.30 0.29 0.20 0.21 0.00 0.54 0.00 0.00 0.31 0.53 0.00 0.69 0.47 0.24 0.00 0.00 0.90 0.17 0.52 0.00 0.09 0.71 0.39 0.18 0.00 0.56 0.30 0.12 0.00 0.00 0.00 0.24 0.00 0.20 0.00 0.15 0.12 0.25 0.18 0.34 0.00 0.00 0.00 0.00 0.23 0.00 K alternative_acceptor CG10080 chr2R + chr2R_17518321_17518491 chr2R_17518321_17518377 chr2R_17518123_17518320;chr2R_17518492_17518801 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.33 100.00 99.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD foxo,I_chr3R_9907161_9907218 chr3R + chr3R_9905361_9905960 chr3R_9905381_9905960 chr3R_9905961_9906185;chr3R_9905068_9905360 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 K intron_retention Taf1 chr3R + chr3R_2480387_2480710 chr3R_2480386_2480387;chr3R_2480710_2480711 chr3R_2480192_2480386;chr3R_2480711_2480724 13.04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N intron_retention CG12581,I_chr3R_9380_9438 chr3R + chr3R_272_369 chr3R_271_272;chr3R_369_370 chr3R_203_271;chr3R_370_509 100.00 100.00 100.00 100.00 100.00 NA 66.67 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K jcn_only_AA NELF-A chr3R + chr3R_17052227_17052375 chr3R_17052227_17052372 chr3R_17050820_17052226;chr3R_17052376_17053536 96.97 95.95 93.62 95.77 97.30 97.37 92.00 97.83 98.82 95.65 100.00 97.73 94.87 100.00 96.00 97.37 100.00 100.00 96.97 98.56 100.00 96.08 95.62 97.56 98.53 96.77 97.65 95.31 92.93 96.70 94.29 93.62 91.94 98.18 98.61 100.00 96.34 98.02 97.40 92.92 96.30 100.00 100.00 95.92 95.83 95.79 96.30 94.06 95.24 99.02 92.71 95.52 98.18 98.28 96.97 96.77 98.11 98.46 K alternative_acceptor CG7766,I_chrX_8993495_8994545,I_chrX_8991338_8991387 chrX - chrX_8991547_8991788 chrX_8991553_8991788 chrX_8991789_8992040;chrX_8991388_8991546 70.00 70.83 65.22 73.08 66.67 70.59 69.70 79.17 70.00 56.25 81.25 77.78 50.00 58.82 68.42 68.18 72.22 70.00 75.00 66.18 78.95 69.23 60.00 73.33 68.97 57.14 71.88 78.95 62.07 63.64 76.67 60.87 82.05 70.00 75.00 63.16 70.97 81.82 74.42 67.31 69.23 73.17 80.00 65.85 74.29 62.50 73.33 86.67 73.68 63.16 69.05 64.00 80.00 70.37 64.52 71.43 62.79 75.68 K jcn_only_AD CG4572,FI_chr3R_15689914_15690042 chr3R - chr3R_15689914_15690042;chr3R_15689914_15690046 chr3R_15689914_15689997 chr3R_15689814_15689913;chr3R_15690047_15690114 7.59 16.42 7.69 4.55 0.00 9.88 10.47 3.18 7.34 4.00 3.70 9.02 3.30 8.97 8.47 4.76 6.25 10.61 0.97 3.28 4.35 16.22 6.32 2.56 3.57 4.48 12.00 8.00 8.70 14.81 7.32 6.45 10.00 7.64 3.03 NA 11.27 10.26 4.60 8.00 NA 5.43 4.29 4.76 7.55 11.36 10.61 3.85 9.24 7.59 9.09 10.42 13.89 13.04 5.26 7.41 7.96 10.00 K intron_retention Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_139558_140513 chr4_139557_139558;chr4_140513_140514 chr4_139464_139557;chr4_140514_140838 0.00 2.08 0.00 6.56 0.00 0.00 0.00 0.99 1.42 0.00 0.00 0.00 15.24 0.00 0.00 1.39 0.00 1.39 0.00 1.00 0.00 0.90 1.60 1.10 0.00 3.06 0.00 0.00 3.03 0.00 0.00 0.00 1.23 1.47 0.00 2.99 0.00 0.00 1.03 0.00 3.64 0.84 1.79 0.00 4.00 2.22 0.00 1.40 1.20 2.74 0.74 0.00 0.00 5.56 0.00 0.00 1.03 0.00 K cassette Cam,I_chr2R_8152423_8161270,R_chr2R_8156928_8161261,I_chr2R_8161049_8161270 chr2R + chr2R_8152423_8161270 chr2R_8152423_8156697;chr2R_8156941_8161270 chr2R_8156698_8156940 chr2R_8152323_8152422;chr2R_8161271_8161361 99.96 99.92 99.93 99.55 100.00 100.00 99.93 100.00 100.00 100.00 100.00 99.95 100.00 99.92 100.00 99.94 100.00 99.37 100.00 99.96 99.90 99.87 100.00 100.00 100.00 99.92 99.85 99.89 99.75 100.00 100.00 100.00 99.90 99.85 99.90 99.87 100.00 99.90 100.00 100.00 99.89 99.96 100.00 99.91 99.90 99.92 99.91 100.00 99.96 100.00 99.93 100.00 100.00 99.89 99.94 100.00 99.93 100.00 K alternative_donor CG5973,I_chr2L_7441485_7443583,I_chr2L_7443388_7443583 chr2L + chr2L_7440963_7443583;chr2L_7441757_7443583;chr2L_7440959_7443583 chr2L_7440852_7443583 chr2L_7443584_7443683;chr2L_7440710_7440851 10.47 11.76 8.70 11.90 12.50 15.00 17.50 15.52 8.60 33.33 3.39 14.58 21.43 24.00 20.59 7.14 13.79 11.76 3.33 9.00 4.35 11.11 4.55 10.00 0.00 14.81 6.67 0.00 16.67 0.00 25.00 10.00 0.00 13.51 14.29 7.69 4.55 0.00 0.00 5.88 NA 11.54 12.00 20.00 0.00 6.67 20.00 23.08 10.94 9.52 9.09 0.00 14.29 0.00 18.92 0.00 6.67 23.08 K jcn_only_AA CG4165,I_chrX_5317784_5317881,I_chrX_5321743_5321838 chrX + chrX_5317051_5317151 chrX_5317051_5317124 chrX_5316613_5317050;chrX_5317152_5317783 1.72 2.00 0.00 4.55 1.85 0.00 0.00 0.00 2.06 0.00 3.70 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 1.72 1.89 2.13 0.00 2.22 4.00 5.06 4.26 3.03 4.85 3.45 1.69 3.23 0.00 0.00 4.60 1.23 0.00 2.25 0.00 0.00 7.89 2.99 0.00 5.06 2.41 4.55 6.06 10.26 0.00 9.09 1.56 0.00 3.33 1.27 K intron_retention exba,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1426031_1426736 chr3R_1426030_1426031;chr3R_1426736_1426737 chr3R_1426010_1426030;chr3R_1426737_1426835 65.16 66.67 NA NA NA NA 63.64 45.00 73.33 NA NA 56.25 30.77 NA NA 53.33 76.92 70.00 57.14 45.00 NA NA 75.00 NA NA NA NA NA NA NA 54.55 NA NA 81.25 NA NA NA NA NA NA NA 56.25 NA 66.67 NA 90.91 NA NA 75.00 92.31 60.00 66.67 NA NA 50.00 NA NA NA K cassette CG40263,F_chr2RHet_1265687_1293040,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1286572_1324445;chr2RHet_1265687_1324445 chr2RHet_1286572_1293055,chr2RHet_1265687_1293055;chr2RHet_1293175_1324445 chr2RHet_1293056_1293174 chr2RHet_1265587_1265686;chr2RHet_1324446_1324530 43.65 40.00 42.86 36.36 47.06 41.67 41.18 41.18 59.02 NA NA 40.54 60.00 47.83 56.00 42.50 62.50 57.14 45.71 56.76 NA NA 36.84 31.58 20.00 32.00 53.85 NA 30.77 57.14 50.00 NA 36.36 46.34 33.33 33.33 50.00 54.55 44.44 44.44 13.79 55.26 50.00 52.38 13.33 25.00 21.43 83.33 48.89 21.43 59.09 53.33 17.65 NA 65.22 26.32 25.00 15.62 K intron_retention CG15625 chr2L + chr2L_4890368_4890428 chr2L_4890367_4890368;chr2L_4890428_4890429 chr2L_4889995_4890367;chr2L_4890429_4891378 3.23 0.00 NA 5.56 NA 5.88 0.00 0.00 7.14 NA NA 4.76 NA NA NA 0.00 NA 0.00 NA 5.41 NA 10.00 0.00 6.06 0.00 NA 5.71 22.22 18.18 0.00 0.00 0.00 0.00 4.35 NA 7.14 10.00 0.00 0.00 0.00 0.00 3.23 NA 3.85 10.34 3.45 5.26 0.00 11.11 0.00 5.71 NA 4.00 0.00 0.00 0.00 3.70 0.00 K intron_retention CG4996,E_chr2R_13627553_13627643,I_chr2R_13629549_13629609 chr2R + chr2R_13629549_13629605 chr2R_13629548_13629549;chr2R_13629605_13629606 chr2R_13629449_13629548;chr2R_13629606_13629771 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 5.88 0.00 NA 0.00 4.55 0.00 NA 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA NA K jcn_only_AA CG34413,I_chr2R_20770882_20770948,F_chr2R_20770891_20770943,I_chr2R_20771136_20772048,I_chr2R_20773500_20774745 chr2R + chr2R_20770882_20770948 chr2R_20770882_20770943 chr2R_20770801_20770881;chr2R_20770949_20771043 99.51 99.44 99.51 100.00 98.81 100.00 99.51 99.06 98.90 100.00 99.19 100.00 99.35 99.39 98.93 99.42 100.00 100.00 100.00 99.13 98.53 100.00 99.64 98.84 99.43 98.71 99.53 100.00 100.00 99.04 97.16 98.82 99.46 99.60 100.00 99.42 99.71 100.00 99.57 99.73 99.12 99.41 100.00 100.00 99.34 100.00 98.74 100.00 99.35 100.00 98.03 100.00 99.21 100.00 98.99 100.00 99.42 100.00 K jcn_only_AD Tequila chr3L + chr3L_9068723_9069957 chr3L_9069896_9069957 chr3L_9069958_9070080 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 98.11 100.00 97.50 100.00 100.00 100.00 100.00 98.46 NA 100.00 100.00 100.00 94.59 100.00 NA NA 100.00 97.30 NA 95.65 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K alternative_acceptor CG9855,I_chr3R_223384_223429 chr3R - chr3R_223363_223429 chr3R_223384_223429 chr3R_223430_223529;chr3R_223284_223362 2.60 0.00 5.17 4.05 0.00 7.32 3.70 2.22 2.35 3.45 2.70 1.09 0.00 0.00 0.00 6.12 5.71 2.33 0.00 3.45 3.70 2.00 0.00 2.38 0.00 0.00 2.38 3.45 1.92 4.65 2.94 0.00 4.76 1.64 5.88 0.00 3.85 1.82 5.66 6.35 0.00 2.15 0.00 2.70 17.65 4.44 2.94 0.00 2.60 12.90 3.08 0.00 3.57 3.57 2.22 8.51 7.32 0.00 K intron_retention I_chr3R_22696095_22697413,Rb97D chr3R - chr3R_22699721_22699792 chr3R_22699720_22699721;chr3R_22699792_22699793 chr3R_22699582_22699720;chr3R_22699793_22700512 16.00 NA 0.00 22.73 NA 16.67 14.29 18.18 11.76 12.50 NA 16.67 NA NA 13.33 NA NA 13.33 NA 20.59 NA NA 23.08 20.83 13.33 NA 29.41 NA NA NA NA NA 14.29 16.00 NA NA 15.62 14.29 20.83 16.00 NA 14.81 NA NA 21.43 15.38 13.04 NA 26.32 14.29 17.65 NA NA 14.29 26.67 NA 30.77 NA K intron_retention CG12104 chr3L - chr3L_1601934_1602484 chr3L_1601933_1601934;chr3L_1602484_1602485 chr3L_1600942_1601933;chr3L_1602485_1602664 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 1.52 7.14 0.00 2.22 0.00 0.00 0.00 2.86 0.00 0.00 2.29 0.00 0.00 0.00 0.00 0.00 3.57 1.27 0.00 2.27 1.23 0.00 3.57 0.00 0.00 0.00 3.85 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 1.31 2.56 2.08 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor key,I_chr2R_20674247_20674291,I_chr2R_20674567_20674813,I_chr2R_20674654_20674897,RI_chr2R_20676692_20676888 chr2R - chr2R_20674228_20674291 chr2R_20674247_20674291 chr2R_20674292_20674391;chr2R_20674147_20674227 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.86 0.00 0.94 0.57 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 1.89 0.00 0.95 0.00 0.93 0.00 0.54 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA l(1)G0269,I_chrX_21192541_21192931 chrX - chrX_21193181_21194157 chrX_21193190_21194157 chrX_21194158_21194468;chrX_21192932_21193180 80.65 76.92 77.11 71.54 83.12 84.29 68.14 79.74 86.67 80.56 82.76 81.34 83.87 75.56 87.13 77.78 88.76 76.14 77.31 83.44 90.00 72.97 74.44 85.33 62.16 62.20 80.82 95.45 70.00 78.00 85.39 72.41 95.12 81.21 70.59 53.33 78.33 84.00 80.70 72.00 63.64 83.77 81.93 84.31 88.89 83.82 97.14 77.27 82.89 85.00 74.55 75.61 80.65 81.82 72.52 78.95 83.33 75.23 K intron_retention Cdk9 chr2R - chr2R_18524705_18524763 chr2R_18524704_18524705;chr2R_18524763_18524764 chr2R_18524473_18524704;chr2R_18524764_18524848 14.29 13.33 10.53 20.00 NA 10.53 30.00 16.67 14.71 15.38 NA 7.69 5.56 NA 13.79 12.50 NA 14.29 14.29 17.95 7.14 6.90 NA 12.50 NA 21.43 25.00 NA 19.05 9.09 42.55 6.90 10.81 13.79 19.05 NA NA NA 12.50 15.22 31.03 13.79 22.22 4.17 15.56 10.00 6.67 14.81 16.22 15.38 20.00 14.29 NA NA 7.14 NA 30.77 9.09 K alternative_acceptor CG5446,I_chr2L_12427370_12427468 chr2L - chr2L_12427370_12427468 chr2L_12427388_12427468 chr2L_12427469_12427568;chr2L_12427270_12427369 99.05 99.25 99.12 99.46 98.75 98.91 98.71 99.43 99.61 98.78 100.00 99.44 100.00 98.02 100.00 97.47 98.77 100.00 100.00 98.68 99.10 98.75 98.94 99.34 98.96 100.00 97.48 98.96 96.26 99.17 96.67 96.90 99.34 100.00 98.95 98.97 98.55 99.29 99.38 98.96 99.24 99.05 100.00 99.37 98.62 99.45 98.73 98.26 99.51 99.26 98.61 98.81 99.27 99.35 99.19 98.72 98.27 98.85 K jcn_only_AD CG3287,I_chr2R_2698891_2699406,I_chr2R_2700203_2700285 chr2R + chr2R_2698681_2699406;chr2R_2698891_2699406;chr2R_2698654_2699406 chr2R_2699349_2699406 chr2R_2699407_2699506;chr2R_2698533_2698653 0.93 1.32 2.13 0.74 6.00 0.00 0.00 0.61 2.04 3.28 1.39 0.52 0.00 0.00 0.00 0.62 0.00 1.30 2.61 0.94 0.00 2.80 0.00 0.98 3.85 1.00 3.88 1.37 2.91 1.02 3.05 0.00 0.00 0.00 0.84 0.94 2.94 0.00 4.41 0.47 0.00 0.65 0.00 0.93 2.17 0.75 1.09 0.46 0.56 1.14 1.45 2.38 1.41 0.00 0.00 0.00 1.79 0.00 K intron_retention CG3386,CG3344,CG32483,Vti1 chr3L - chr3L_686287_686341 chr3L_686286_686287;chr3L_686341_686342 chr3L_685871_686286;chr3L_686342_686527 100.00 100.00 100.00 NA NA NA 100.00 NA 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 100.00 NA 94.12 100.00 90.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 NA 91.67 100.00 100.00 92.86 94.44 100.00 100.00 NA 100.00 88.89 100.00 NA 100.00 100.00 100.00 100.00 88.89 NA 100.00 NA NA 100.00 NA K intron_retention vap,RI_chrX_15897976_15899352,I_chrX_15897976_15899654,I_chrX_15898011_15899654,I_chrX_15898427_15899017,RI_chrX_15898427_15899654,RI_chrX_15899237_15899352,I_chrX_15899237_15899654 chrX - chrX_15898427_15899352 chrX_15898426_15898427;chrX_15899352_15899353 chrX_15898361_15898426;chrX_15899353_15899365 93.84 92.86 81.82 94.44 NA 93.33 100.00 90.00 93.94 NA 90.91 95.45 100.00 100.00 NA 96.30 93.33 NA 93.75 96.30 100.00 91.67 94.44 100.00 90.00 90.91 93.75 NA 92.31 88.89 94.74 NA 94.44 100.00 100.00 88.24 88.89 NA 88.89 83.33 88.89 96.15 100.00 100.00 87.50 94.44 100.00 92.00 96.97 90.91 84.21 90.00 100.00 NA 94.44 NA 90.00 94.74 K alternative_donor Syx4,I_chrX_2635555_2635621,I_chrX_2636831_2636971 chrX - chrX_2633579_2633652;chrX_2633579_2635455 chrX_2633579_2633742 chrX_2633330_2633578;chrX_2635456_2635529 9.26 9.26 7.94 8.47 7.32 10.42 11.29 10.20 12.15 30.00 7.27 7.87 18.52 14.00 9.52 11.25 10.87 9.80 9.23 8.41 11.11 5.26 6.67 11.63 8.00 9.76 7.14 10.53 7.69 5.71 9.09 7.69 5.17 8.66 10.87 10.00 8.11 11.76 7.84 8.57 5.00 9.82 9.80 6.90 5.13 9.38 13.79 7.02 13.59 8.06 13.04 10.71 16.67 13.33 8.86 10.42 8.89 9.09 K intron_retention CG6091,E_chr3L_11600447_11600553 chr3L - chr3L_11599299_11599356 chr3L_11599298_11599299;chr3L_11599356_11599357 chr3L_11598527_11599298;chr3L_11599357_11599571 0.00 0.00 5.00 1.54 0.00 0.00 4.62 4.76 0.00 0.00 0.00 3.23 0.00 5.26 2.13 0.00 0.00 0.00 2.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 12.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.45 0.00 NA 2.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Amun,I_chrX_11607839_11608272,I_chrX_11607842_11608105,I_chrX_11607842_11608125,RI_chrX_11607842_11608272 chrX - chrX_11607842_11608590 chrX_11607842_11608507 chrX_11607788_11607841;chrX_11608591_11608810 50.20 57.14 41.38 58.00 47.06 48.28 51.22 61.67 46.15 47.62 46.43 54.84 56.00 45.83 59.09 52.50 60.00 52.38 37.93 36.05 31.82 35.29 75.00 64.29 58.33 76.00 72.41 NA 36.51 29.69 39.47 18.75 28.04 51.67 22.58 46.15 65.31 75.00 70.00 24.05 30.95 49.18 58.06 30.61 29.58 48.15 74.07 29.17 59.42 54.29 57.69 68.18 40.00 79.17 49.06 69.70 65.62 24.02 K intron_retention Bsg25D chr2L - chr2L_5273098_5273160 chr2L_5273097_5273098;chr2L_5273160_5273161 chr2L_5272986_5273097;chr2L_5273161_5273554 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA NA 9.09 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 3.85 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA NA 0.00 0.00 0.00 K jcn_only_AD I_chr3R_17177101_17200781,mod(mdg4),RI_chr3R_17178359_17178534 chr3R - chr3R_17178359_17200781 chr3R_17178359_17178534 chr3R_17178259_17178358;chr3R_17200782_17200881 82.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 82.14 K intron_retention mmd chrX - chrX_15852624_15856018 chrX_15852623_15852624;chrX_15856018_15856019 chrX_15852581_15852623;chrX_15856019_15856024 81.75 NA NA NA NA NA NA NA 77.78 NA NA NA 100.00 NA NA NA NA NA NA 76.47 NA NA NA NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA 77.78 NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA N jcn_only_AD He,I_chr2L_13975880_13975977 chr2L - chr2L_13972612_13972790 chr2L_13972612_13972675 chr2L_13972094_13972611;chr2L_13972791_13972964 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.77 0.97 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Cpsf100,Pkc98E chr3R + chr3R_24860534_24860596 chr3R_24860534_24860592 chr3R_24860465_24860533;chr3R_24860597_24862784 100.00 100.00 97.56 100.00 100.00 100.00 97.22 100.00 98.72 NA 100.00 100.00 100.00 97.06 100.00 100.00 100.00 98.04 100.00 96.97 98.00 100.00 97.67 100.00 NA 100.00 100.00 98.04 95.65 100.00 100.00 100.00 100.00 98.72 100.00 100.00 97.62 100.00 100.00 100.00 100.00 99.00 100.00 95.83 96.67 NA 100.00 100.00 98.85 100.00 97.56 100.00 100.00 NA 98.36 100.00 100.00 100.00 K intron_retention CG5004,E_chrX_17024712_17024996 chrX + chrX_17024604_17024996 chrX_17024603_17024604;chrX_17024996_17024997 chrX_17024453_17024603;chrX_17024997_17025096 34.62 46.15 30.95 33.33 55.00 41.38 39.06 40.85 44.44 15.38 33.33 32.81 30.30 41.03 40.48 38.89 43.75 31.43 42.86 32.61 23.08 22.02 31.03 35.29 32.26 38.89 29.27 56.25 28.57 25.00 34.78 36.11 15.84 37.93 26.67 26.67 33.33 28.57 25.00 33.33 28.00 43.24 54.84 42.86 28.21 32.65 44.44 25.76 37.88 51.43 50.98 34.62 21.21 50.00 41.86 37.50 34.88 27.16 K jcn_only_AA CG17494 chr2L + chr2L_22477415_22477476 chr2L_22477415_22477473 chr2L_22476854_22477414;chr2L_22477477_22478491 96.77 98.84 100.00 96.25 98.51 96.10 97.72 98.56 97.52 96.67 96.61 98.62 94.79 100.00 96.43 96.45 98.06 98.48 97.74 97.02 100.00 87.18 97.98 96.51 96.30 94.92 97.94 94.20 96.55 97.73 97.92 97.56 97.22 95.77 97.44 93.02 97.01 97.78 96.08 96.08 100.00 98.10 95.24 96.77 96.00 91.53 96.61 100.00 95.98 96.25 96.04 100.00 97.87 92.73 96.58 97.10 95.69 96.63 K intron_retention CG12499 chr3R - chr3R_18271809_18271860 chr3R_18271808_18271809;chr3R_18271860_18271861 chr3R_18265873_18271808;chr3R_18271861_18272364 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 K intron_retention CG5798 chr3R + chr3R_16961540_16961594 chr3R_16961539_16961540;chr3R_16961594_16961595 chr3R_16961057_16961539;chr3R_16961595_16962038 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette bip2,RI_chr4_481674_482028,RI_chr4_481674_487126,RI_chr4_482358_482702,RI_chr4_483128_487126,RI_chr4_483144_483680,RI_chr4_486609_487126 chr4 - chr4_481674_487126 chr4_481674_482130;chr4_482955_483013;chr4_483128_483680;chr4_485367_485422;chr4_485942_487126 chr4_482131_482954;chr4_483014_483127;chr4_483681_485366;chr4_485423_485941 chr4_481574_481673;chr4_487127_487226 100.00 87.50 100.00 92.31 83.33 100.00 100.00 100.00 96.55 100.00 100.00 90.00 100.00 100.00 90.91 87.50 91.67 83.33 93.33 90.00 100.00 100.00 100.00 88.89 100.00 100.00 87.50 100.00 83.33 100.00 76.47 100.00 80.00 96.00 100.00 100.00 100.00 100.00 100.00 83.33 80.00 100.00 91.67 100.00 100.00 100.00 85.71 100.00 100.00 100.00 91.67 83.33 80.00 100.00 100.00 100.00 75.00 100.00 K intron_retention Actn chrX - chrX_1919733_1919807 chrX_1919732_1919733;chrX_1919807_1919808 chrX_1919221_1919732;chrX_1919808_1920942 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 3.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.27 0.00 1.54 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 1.45 0.00 0.00 K cassette CG32982,I_chr2L_9127467_9148754,EF_chr2L_9135385_9148841,F_chr2L_9149162_9154658 chr2L + chr2L_9127467_9154658;chr2L_9127467_9148754 chr2L_9127467_9135117;chr2L_9135385_9148754,chr2L_9135385_9154658 chr2L_9135118_9135384 chr2L_9127456_9127466;chr2L_9154659_9154758 16.67 15.38 13.64 19.23 10.53 25.00 13.04 13.79 17.50 2.27 18.18 37.21 22.22 18.75 12.50 36.84 18.18 8.33 20.00 17.65 16.67 23.36 20.69 13.89 13.16 26.32 12.73 23.08 27.14 13.33 16.00 12.20 17.86 22.58 27.78 32.20 12.82 14.29 16.92 13.04 21.43 14.58 9.52 19.18 14.29 15.25 15.38 12.24 20.59 10.00 21.28 17.24 16.67 12.90 22.22 14.71 12.90 10.81 K jcn_only_AD opa1-like,I_chr2R_10119470_10120234,I_chr2R_10121848_10121900,I_chr2R_10122128_10122197,I_chr2R_10122334_10122393 chr2R - chr2R_10119470_10120234;chr2R_10119470_10120220 chr2R_10119470_10120229 chr2R_10119370_10119469;chr2R_10120235_10120334 64.53 60.43 64.81 55.56 61.36 56.12 56.00 58.47 65.00 79.17 50.00 66.67 75.24 72.50 66.91 60.00 67.33 67.41 63.78 64.53 60.71 61.29 67.20 67.96 63.91 59.68 51.19 61.00 58.99 72.28 66.27 64.20 64.42 66.67 68.13 53.33 60.00 56.52 61.03 29.32 56.49 65.34 76.85 66.47 72.09 68.07 65.88 67.61 70.32 67.02 68.97 60.34 65.43 55.45 67.11 57.24 61.44 77.65 K jcn_only_AA Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629527_2629921 chr3L_2629585_2629921 chr3L_2629922_2630021;chr3L_2629427_2629526 8.70 NA NA NA NA NA NA 8.70 15.00 NA NA NA NA NA 0.00 3.12 NA NA NA 7.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.33 NA NA NA NA NA 11.54 8.82 NA NA NA NA NA 15.00 NA NA NA K jcn_only_AA Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754284_15755172;chrX_15754284_15755148;chrX_15754284_15755021;chrX_15754284_15755184;chrX_15754284_15755409;chrX_15754284_15755256;chrX_15754284_15755416;chrX_15754284_15755268 chrX_15754284_15754777 chrX_15754256_15754283 14.10 5.93 14.50 5.07 9.18 15.04 8.84 10.29 9.47 22.39 14.10 30.12 26.61 11.33 20.34 7.96 8.26 15.05 14.19 21.99 12.79 6.67 13.02 22.52 11.22 17.50 8.66 13.56 8.96 19.00 15.73 19.30 23.17 16.15 21.05 32.41 18.18 8.70 13.04 19.73 16.22 12.96 16.41 6.63 7.69 17.39 12.00 20.91 17.61 8.93 14.89 13.61 5.26 10.71 15.48 15.31 5.93 11.11 K jcn_only_AD CG18766,I_chr3R_23069667_23070256,I_chr3R_23069667_23070318,RI_chr3R_23069667_23070361,I_chr3R_23069667_23070365 chr3R - chr3R_23069667_23070738;chr3R_23069667_23070911 chr3R_23069667_23070732 chr3R_23069567_23069666;chr3R_23070912_23070951 5.97 5.88 6.17 1.67 11.76 7.55 8.66 7.83 5.45 4.00 0.00 5.08 1.45 6.10 12.33 10.00 2.94 7.69 8.11 8.18 0.00 2.22 2.50 7.84 1.89 0.00 7.04 0.00 6.67 4.00 2.30 10.42 10.29 9.84 8.62 9.23 4.92 6.82 7.84 5.71 6.25 4.80 8.57 11.48 12.50 4.67 5.97 9.23 3.65 3.95 8.43 4.35 5.13 10.53 5.62 4.11 5.33 3.45 K intron_retention scra,EI_chr2R_3480349_3480405 chr2R + chr2R_3480339_3480405 chr2R_3480338_3480339;chr2R_3480405_3480406 chr2R_3480249_3480338;chr2R_3480406_3480505 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20336405_20336466;chr2L_20336405_20336463 chr2L_20336405_20336469 chr2L_20336338_20336404;chr2L_20336470_20336529 13.58 22.86 9.09 17.78 4.17 9.09 9.26 12.28 14.29 11.54 10.34 10.53 15.38 8.00 16.22 13.64 12.90 16.67 17.95 8.06 16.00 15.75 16.36 8.51 4.17 14.71 11.63 21.05 13.79 8.33 13.64 17.86 20.69 15.00 18.92 10.81 14.00 16.13 14.00 11.59 18.00 13.58 10.34 14.29 7.69 7.84 10.81 14.06 14.29 9.43 9.09 11.11 3.70 6.06 16.67 13.51 13.64 10.34 K intron_retention msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585733_2586402 chr3L_2585732_2585733;chr3L_2586402_2586403 chr3L_2585639_2585732;chr3L_2586403_2586502 77.50 70.00 65.22 86.96 NA 57.14 85.71 72.73 83.33 NA 76.47 82.76 78.57 78.57 90.48 75.00 66.67 77.78 84.21 68.97 71.43 79.17 64.71 81.25 100.00 85.00 86.67 NA 80.77 78.57 76.47 63.64 61.90 78.12 81.82 66.67 66.67 72.73 84.62 76.67 78.57 81.58 65.00 93.75 NA 80.00 75.00 65.62 77.50 NA 72.73 88.89 60.00 NA 72.22 NA NA 69.23 K intron_retention GlcAT-P,I_chr3L_11172482_11172633 chr3L - chr3L_11172817_11175254 chr3L_11172816_11172817;chr3L_11175254_11175255 chr3L_11172634_11172816;chr3L_11175255_11175322 27.78 25.00 NA NA NA NA NA 36.84 45.45 NA NA 24.32 NA NA 20.00 20.00 NA NA NA 28.57 NA 19.23 17.65 NA NA 30.00 33.33 NA NA NA NA NA 35.71 27.78 NA 24.14 28.57 28.57 33.33 34.62 NA 15.15 NA NA 30.77 33.33 NA 23.53 21.05 NA 42.86 NA 25.00 NA 22.22 NA NA 12.50 K intron_retention CG8360 chr2L + chr2L_8213530_8213780 chr2L_8213529_8213530;chr2L_8213780_8213781 chr2L_8213492_8213529;chr2L_8213781_8213827 0.00 0.00 2.82 4.11 2.13 0.00 0.00 2.63 0.00 0.00 0.00 2.40 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.87 0.00 5.08 0.00 0.00 1.67 0.00 1.96 1.37 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 3.45 0.00 0.00 0.00 0.00 0.00 2.35 0.00 1.28 0.00 2.15 4.65 0.00 1.18 0.00 0.00 0.00 3.33 K alternative_donor CG40228,noncoding_14406,RI_chr3LHet_2190419_2190470 chr3LHet - chr3LHet_2190419_2190563;chr3LHet_2190419_2190548;chr3LHet_2190419_2190470;chr3LHet_2190419_2190561 chr3LHet_2190419_2190556 chr3LHet_2190319_2190418;chr3LHet_2190564_2190570 0.00 0.00 0.00 3.95 0.00 0.00 0.00 1.18 2.08 NA 0.00 1.59 0.00 2.22 0.00 2.31 0.00 3.85 6.52 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 2.47 2.33 2.94 0.00 0.00 0.00 0.00 3.85 1.96 2.94 6.67 0.00 3.61 2.86 2.33 2.86 4.76 0.00 0.00 0.00 0.00 2.63 0.00 4.17 3.12 K cassette mbf1,RI_chr3L_16568077_16568816 chr3L + chr3L_16568077_16568816 chr3L_16568077_16568286;chr3L_16568448_16568816 chr3L_16568287_16568447 chr3L_16567977_16568076;chr3L_16568817_16568916 100.00 100.00 100.00 99.44 99.47 100.00 99.42 99.69 100.00 100.00 100.00 100.00 100.00 99.41 100.00 99.58 100.00 100.00 99.43 99.83 100.00 99.67 100.00 100.00 99.69 99.49 99.78 100.00 99.78 100.00 100.00 100.00 100.00 100.00 99.62 99.72 100.00 100.00 99.81 100.00 100.00 100.00 100.00 100.00 99.80 99.82 100.00 100.00 100.00 99.78 99.77 99.63 100.00 99.76 99.60 100.00 100.00 100.00 K intron_retention Flo,I_chr2R_11456012_11456623 chr2R - chr2R_11454678_11454747 chr2R_11454677_11454678;chr2R_11454747_11454748 chr2R_11454609_11454677;chr2R_11454748_11454816 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 K intron_retention CG31908 chr2L - chr2L_7026982_7027193 chr2L_7026981_7026982;chr2L_7027193_7027194 chr2L_7026724_7026981;chr2L_7027194_7027261 98.08 96.15 100.00 100.00 97.37 100.00 100.00 98.80 99.30 93.10 97.96 98.84 97.22 97.78 97.78 98.88 100.00 96.97 100.00 98.90 100.00 95.35 98.15 98.41 100.00 100.00 100.00 96.55 100.00 90.24 100.00 97.14 97.40 100.00 100.00 97.67 97.62 100.00 97.44 96.72 97.87 100.00 100.00 92.86 88.89 96.88 88.52 98.08 98.91 95.59 98.31 100.00 88.89 97.06 100.00 96.49 96.83 88.71 K cassette woc,I_chr3R_23089174_23089695,I_chr3R_23096096_23096561 chr3R - chr3R_23087666_23087948;chr3R_23087663_23087948 chr3R_23087663_23087837,chr3R_23087666_23087837;chr3R_23087883_23087948 chr3R_23087838_23087882 chr3R_23086219_23087662;chr3R_23087949_23088209 8.74 12.36 12.39 11.19 7.78 8.77 5.88 9.93 7.36 7.56 4.65 8.63 9.21 10.45 11.20 9.09 11.69 6.42 9.86 8.70 5.94 7.33 7.67 9.48 5.56 3.66 5.73 6.14 8.09 7.87 7.61 11.65 9.19 8.38 6.67 2.40 10.16 13.04 9.38 11.43 5.65 9.02 8.00 18.38 7.81 9.03 11.24 8.11 7.95 7.91 10.42 8.74 8.40 11.45 9.65 12.07 9.48 9.66 K intron_retention CG8451 chr2L - chr2L_8200961_8201016 chr2L_8200960_8200961;chr2L_8201016_8201017 chr2L_8200706_8200960;chr2L_8201017_8201708 0.00 2.70 0.00 0.00 4.17 0.00 4.76 2.00 5.33 0.00 0.00 0.00 4.35 0.00 0.00 6.38 0.00 0.00 2.27 3.70 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 6.67 10.53 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 5.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Ucrh,CREFI_chr3LHet_606442_607073 chr3LHet + chr3LHet_606275_606349 chr3LHet_606275_606333 chr3LHet_606198_606274;chr3LHet_606350_606441 5.42 3.17 7.77 6.87 6.17 3.92 3.37 6.47 5.32 3.33 4.55 6.29 4.93 5.13 7.25 6.53 6.74 2.25 7.18 0.72 0.00 3.12 3.57 10.81 6.90 9.57 8.82 NA 4.88 9.52 4.11 4.69 1.85 7.37 NA 4.55 5.88 0.00 0.00 10.34 6.94 5.70 8.87 10.00 13.11 7.29 0.00 5.56 4.60 4.92 NA 0.00 NA NA 5.52 1.72 0.00 5.88 K cassette CtBP chr3R + chr3R_8847365_8851110 chr3R_8847365_8850521;chr3R_8850752_8851110 chr3R_8850522_8850751 chr3R_8847142_8847364;chr3R_8851111_8851987 7.55 4.17 7.69 8.33 5.56 8.33 5.56 16.67 9.09 6.67 NA 15.38 5.56 5.88 6.67 NA NA 12.50 NA 9.38 NA 8.89 5.71 7.32 8.33 13.33 4.76 3.45 9.68 4.55 16.67 12.50 17.65 9.09 6.67 5.56 4.44 7.14 9.68 7.69 5.56 8.70 16.67 12.00 10.00 4.35 4.17 18.18 7.41 9.09 4.35 5.88 6.25 10.53 6.67 5.88 6.06 12.50 K intron_retention CG11737,I_chr3R_4344114_4344207 chr3R + chr3R_4344114_4345327 chr3R_4344113_4344114;chr3R_4345327_4345328 chr3R_4344014_4344113;chr3R_4345328_4346271 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 5.56 0.00 0.00 3.45 NA 5.56 12.50 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 1.92 NA 0.00 0.00 0.00 0.00 6.67 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K alternative_acceptor CG15445,REI_chrX_20988432_20988485,RI_chrX_20988432_20988489,REI_chrX_20988439_20988489,I_chrX_20988439_20988552 chrX + chrX_20988439_20988489 chrX_20988439_20988485 chrX_20988339_20988438;chrX_20988490_20988585 87.50 100.00 83.33 83.33 90.91 92.31 76.47 95.24 85.19 NA 90.00 84.62 90.91 92.31 84.21 81.82 90.00 85.71 93.33 79.31 90.00 70.59 90.91 86.67 92.31 100.00 95.24 94.44 88.89 65.00 85.71 84.62 86.67 94.74 90.91 100.00 88.89 90.00 88.24 80.95 87.50 79.17 75.00 80.00 76.92 65.00 90.91 64.00 77.42 84.62 100.00 90.00 NA 75.00 92.31 91.67 85.71 68.57 K intron_retention RI_chrX_1796525_1796585,mip130,CG3573,I_chrX_1820956_1821011,CG11596 chrX + chrX_1818823_1818883 chrX_1818822_1818823;chrX_1818883_1818884 chrX_1818565_1818822;chrX_1818884_1819069 0.00 0.00 0.00 3.49 0.00 0.00 0.00 0.00 2.84 0.00 0.00 0.00 0.00 0.00 3.61 0.00 0.00 2.44 1.33 2.26 0.00 0.00 1.59 2.08 0.00 1.82 4.17 0.00 2.17 0.00 0.00 0.00 1.39 0.00 0.00 0.00 2.70 0.00 1.37 0.00 0.00 2.26 0.00 0.00 0.00 0.79 0.00 0.00 2.52 0.00 0.00 6.45 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Vha100-1,I_chr3R_24958227_24960770,RI_chr3R_24959152_24959582,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24958227_24959582 chr3R_24958226_24958227;chr3R_24959582_24959583 chr3R_24958127_24958226;chr3R_24959583_24959682 7.27 1.85 12.20 18.92 4.88 6.82 13.21 8.47 10.75 11.54 9.09 9.09 25.00 0.00 7.32 2.63 3.57 5.26 NA 4.04 5.00 17.50 7.46 4.23 9.09 2.70 6.82 10.53 8.00 6.52 5.71 9.52 7.69 11.25 6.45 10.53 2.50 4.17 3.28 7.25 12.50 7.29 5.26 13.64 2.56 6.52 6.12 13.16 6.85 3.12 8.20 15.15 9.38 8.33 7.84 0.00 0.00 5.88 K intron_retention PNUTS,I_chr2L_870553_871317 chr2L + chr2L_871577_871640 chr2L_871576_871577;chr2L_871640_871641 chr2L_871353_871576;chr2L_871641_871738 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG1399,I_chr2R_3574133_3574191 chr2R - chr2R_3565240_3565323;chr2R_3565240_3565310;chr2R_3565240_3566074;chr2R_3565240_3565403;chr2R_3565240_3565374 chr2R_3565240_3565502 chr2R_3564840_3565239 8.70 21.21 11.54 10.00 16.13 3.12 3.08 15.22 1.52 2.04 3.77 2.44 4.76 12.90 13.51 19.44 16.67 19.44 5.13 10.26 7.55 0.00 2.50 14.00 0.00 3.85 1.67 8.57 10.71 15.25 5.26 8.89 8.70 9.62 2.63 3.85 7.55 12.12 8.70 10.42 6.78 5.45 14.81 15.56 7.69 5.08 2.38 13.73 9.09 4.35 6.56 12.82 14.81 14.63 4.55 5.00 21.43 33.78 K jcn_only_AD CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1666219_1670219;chr2R_1666219_1669803;chr2R_1666219_1670325;chr2R_1666219_1670281 chr2R_1666219_1670203 chr2R_1666119_1666218;chr2R_1670326_1670328 12.35 4.55 18.92 5.00 0.00 32.00 15.56 12.73 7.27 16.00 5.00 8.33 5.26 6.06 16.13 20.90 15.79 8.00 15.15 18.06 19.05 NA 3.85 17.39 NA 21.43 11.11 NA 9.68 13.04 12.77 22.58 0.00 13.64 17.39 5.00 4.76 NA NA 7.41 12.12 12.28 19.35 6.52 4.76 12.96 NA 10.81 12.35 9.52 14.29 13.64 23.81 NA 13.16 NA 4.76 10.39 K jcn_only_AD CG8839,I_chr2R_8229288_8229488,I_chr2R_8229288_8231538 chr2R - chr2R_8229288_8232025;chr2R_8229288_8231964;chr2R_8229288_8231966 chr2R_8229288_8231968 chr2R_8229188_8229287;chr2R_8232026_8232112 6.34 5.94 8.37 5.84 5.47 7.28 4.96 2.43 3.79 4.49 3.31 6.63 7.29 6.63 6.44 8.10 5.00 6.36 3.85 5.98 7.74 2.72 4.72 4.24 10.00 3.69 10.98 4.76 10.69 6.17 5.42 7.56 7.81 6.36 9.80 6.25 13.08 7.59 6.34 6.67 7.21 4.76 9.05 8.33 8.00 4.38 2.27 5.34 6.47 7.46 9.17 10.00 1.96 0.00 4.40 4.35 5.26 8.36 N jcn_only_AA wun2,I_chr2R_5304606_5304660 chr2R + chr2R_5304841_5304916 chr2R_5304841_5304899 chr2R_5304772_5304840;chr2R_5304917_5305073 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 86.01 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG31224,Cpsf73 chr3R - chr3R_14487477_14487537 chr3R_14487476_14487477;chr3R_14487537_14487538 chr3R_14487034_14487476;chr3R_14487538_14488829 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette Gli chr2L - chr2L_15759846_15762568 chr2L_15759846_15760209;chr2L_15760343_15760401;chr2L_15760575_15762568 chr2L_15760210_15760342;chr2L_15760402_15760574 chr2L_15759743_15759845;chr2L_15762569_15762636 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 53.85 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 NA K intron_retention Nhe3,I_chr2L_6680525_6680670 chr2L - chr2L_6680115_6680174 chr2L_6680114_6680115;chr2L_6680174_6680175 chr2L_6679986_6680114;chr2L_6680175_6680283 1.14 2.04 0.00 0.00 4.35 0.00 0.00 0.00 2.53 0.00 8.33 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.88 1.35 2.44 2.27 0.00 1.14 7.50 33.33 0.00 0.00 5.88 0.00 2.08 4.08 1.82 3.61 1.72 0.00 1.35 4.35 4.60 0.00 3.33 0.00 3.90 0.00 0.00 6.25 3.33 0.00 5.41 0.00 3.03 2.94 0.00 1.49 0.00 K intron_retention CG4699,alpha-Man-IIb,chr3R_11636330_11636555.0,chr3R_11637375_11637620.0,CG4576 chr3R + chr3R_11630328_11644637 chr3R_11630327_11630328;chr3R_11644637_11644638 chr3R_11630006_11630327;chr3R_11644638_11645146 7.69 NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA 5.26 NA NA NA NA NA NA NA NA NA NA K jcn_only_AA mbc,I_chr3R_19615584_19615649,I_chr3R_19625220_19625288 chr3R + chr3R_19625220_19625288 chr3R_19625220_19625285 chr3R_19625120_19625219;chr3R_19625289_19625372 98.96 96.70 98.61 99.44 94.29 98.51 99.24 99.24 99.45 100.00 98.73 99.35 98.70 98.80 100.00 98.96 99.03 100.00 98.94 98.82 97.92 98.25 97.89 98.03 98.85 98.36 98.45 100.00 100.00 100.00 98.75 100.00 98.11 98.36 100.00 97.37 100.00 98.44 100.00 99.22 98.48 96.72 98.46 99.03 100.00 100.00 100.00 100.00 99.25 97.78 97.87 100.00 100.00 100.00 100.00 98.39 100.00 96.43 K mutually_exclusive par-1,EFI_chr2R_15361473_15362032,RI_chr2R_15361473_15362035,I_chr2R_15361473_15366246,I_chr2R_15362147_15365120,F_chr2R_15362147_15365138,I_chr2R_15362147_15365165,RI_chr2R_15363358_15365120,I_chr2R_15363358_15366246,I_chr2R_15365210_15370456 chr2R + chr2R_15361473_15366256,chr2R_15366371_15370456 chr2R_15361473_15365165,chr2R_15365210_15370456 chr2R_15366257_15366370 chr2R_15365166_15365209 chr2R_15361373_15361472;chr2R_15370457_15370556 3.23 4.55 2.94 0.00 3.45 0.00 3.45 0.00 1.19 0.00 0.00 2.27 7.14 0.00 3.45 0.00 0.00 0.00 4.76 1.64 4.00 13.33 2.56 2.63 10.00 3.23 4.00 4.55 15.38 3.57 4.00 0.00 6.67 2.17 5.56 4.55 2.70 4.17 2.70 3.70 11.11 2.04 0.00 4.17 5.56 4.76 3.57 12.50 1.79 3.23 2.94 0.00 5.56 6.67 2.70 5.26 2.86 0.00 K mutually_exclusive CG5674 chr2L + chr2L_17963606_17971871,chr2L_17972019_17972262 chr2L_17963606_17969371,chr2L_17969519_17972262 chr2L_17971872_17972018 chr2L_17969372_17969518 chr2L_17963396_17963605;chr2L_17972263_17974832 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 83.33 NA NA NA NA NA 84.62 NA NA NA NA NA NA 100.00 NA NA 80.00 K jcn_only_AA CG5746 chr3R - chr3R_20172475_20172538 chr3R_20172483_20172538 chr3R_20172539_20172607;chr3R_20172414_20172474 100.00 100.00 99.22 98.92 98.99 100.00 99.34 99.40 99.64 100.00 98.97 100.00 100.00 100.00 100.00 99.22 100.00 99.19 100.00 100.00 100.00 99.48 100.00 100.00 100.00 100.00 99.49 100.00 99.21 99.52 100.00 100.00 99.69 100.00 100.00 100.00 100.00 99.37 99.64 100.00 100.00 100.00 100.00 100.00 99.54 98.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.39 100.00 100.00 K alternative_donor Zyx102EF,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1081261_1081364;chr4_1081261_1081398 chr4_1081261_1081366 chr4_1081180_1081260;chr4_1081399_1081402 85.16 NA NA 90.00 NA NA 84.62 NA 92.31 NA NA 75.00 NA 83.33 NA 90.91 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 85.71 NA NA 70.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 81.82 NA NA NA NA NA NA NA NA NA N jcn_only_AD CG6293,Bruce chr3R - chr3R_6136241_6137129;chr3R_6136241_6137183 chr3R_6136241_6136995 chr3R_6135621_6136240;chr3R_6137184_6137328 0.00 0.00 0.00 0.00 0.00 0.00 2.97 0.00 0.00 0.00 0.00 0.84 2.74 0.00 0.00 0.00 0.00 1.59 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9099 chrX - chrX_16780262_16780350 chrX_16780261_16780262;chrX_16780350_16780351 chrX_16780000_16780261;chrX_16780351_16780489 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG9791 chr3R + chr3R_137697_137762 chr3R_137697_137751 chr3R_137378_137696;chr3R_137763_138036 91.43 NA NA 85.71 NA NA 84.62 91.43 90.74 NA 85.00 90.48 95.00 95.00 80.95 96.97 NA NA 85.19 86.67 NA 95.24 75.00 96.30 NA NA 100.00 NA NA 95.24 75.00 NA 93.10 96.67 NA NA NA NA 93.55 94.74 NA 87.80 85.19 90.91 NA NA NA 95.83 97.73 NA 92.31 NA NA NA 90.62 NA NA NA K intron_retention CG13319,RI_chr2R_8812301_8816468 chr2R + chr2R_8811853_8811926 chr2R_8811852_8811853;chr2R_8811926_8811927 chr2R_8811372_8811852;chr2R_8811927_8812157 14.71 12.24 14.29 15.38 18.52 10.34 21.21 14.71 14.58 14.00 31.58 4.26 11.11 11.11 13.79 22.22 13.64 16.67 0.00 16.36 23.53 13.64 13.92 8.47 28.57 33.33 20.00 22.45 25.00 12.50 17.50 16.67 26.67 12.82 6.90 26.32 8.20 7.46 11.76 20.59 24.14 12.28 8.70 17.50 19.15 16.92 14.29 32.26 18.18 7.69 19.23 21.43 22.37 10.34 6.06 11.84 9.03 30.99 K intron_retention RI_chr3L_21188731_21188785,CG33054,CG33056,noncoding_13933 chr3L - chr3L_21193615_21193724 chr3L_21193614_21193615;chr3L_21193724_21193725 chr3L_21193577_21193614;chr3L_21193725_21193737 100.00 100.00 NA 100.00 NA NA 100.00 100.00 93.75 NA NA 90.91 NA 88.89 87.50 100.00 NA NA 100.00 100.00 NA 90.91 100.00 100.00 NA NA 90.91 100.00 NA NA 92.31 NA NA 92.31 NA NA 100.00 NA NA 91.67 NA 100.00 NA 87.50 NA 100.00 NA NA 100.00 90.00 100.00 100.00 NA NA 100.00 NA 93.75 NA K alternative_donor I_chr2R_17169674_17170491,CG10069,I_chr2R_17169897_17170495,I_chr2R_17170432_17170491,I_chr2R_17171765_17171886 chr2R + chr2R_17170432_17170491;chr2R_17170336_17170491;chr2R_17169885_17170491;chr2R_17169897_17170491 chr2R_17170070_17170491 chr2R_17170492_17170591;chr2R_17169869_17169884 11.11 16.67 9.09 4.76 9.09 12.50 27.03 25.00 9.80 6.67 15.00 9.62 14.81 19.23 10.00 7.14 15.38 17.39 9.52 9.38 13.04 9.43 11.11 8.57 12.50 15.62 9.09 10.00 5.13 13.79 11.11 8.33 12.50 14.81 16.67 18.18 6.67 12.90 8.89 5.63 10.34 8.93 26.09 7.69 12.50 13.79 13.04 10.00 10.91 14.29 16.67 10.34 9.09 9.09 11.76 16.67 13.04 10.26 K intron_retention Arp87C chr3R + chr3R_8518878_8518936 chr3R_8518877_8518878;chr3R_8518936_8518937 chr3R_8518726_8518877;chr3R_8518937_8519483 1.10 0.00 0.00 1.64 1.39 0.00 0.00 0.00 1.32 0.00 0.00 1.61 1.43 1.69 4.12 2.70 3.23 0.00 2.94 0.88 1.47 5.39 0.87 0.00 0.91 0.00 4.81 10.45 3.14 2.29 3.66 0.00 1.45 0.00 1.46 1.59 2.11 1.02 1.41 1.48 1.33 1.30 0.00 0.77 1.26 1.10 0.99 0.00 1.04 0.70 0.96 0.00 0.00 0.61 3.19 1.06 1.49 0.00 K intron_retention I_chr2R_7778750_7781059,I_chr2R_7778971_7781059,Ef1alpha48D,I_chr2R_7779690_7780997,I_chr2R_7779690_7781065,I_chr2R_7779690_7783075,I_chr2R_7779719_7781059,I_chr2R_7779813_7781059,I_chr2R_7779892_7781059,EF_chr2R_7779896_7781065,I_chr2R_7780542_7781059,I_chr2R_7780580_7781059,snoRNA:Me28S-A1322,I_chr2R_7780840_7781059,I_chr2R_7780877_7781059,RI_chr2R_7781135_7783075 chr2R + chr2R_7779892_7781059 chr2R_7779891_7779892;chr2R_7781059_7781060 chr2R_7779804_7779891;chr2R_7781060_7781097 94.12 94.44 100.00 96.30 NA 90.91 95.83 94.74 91.18 100.00 90.00 94.74 72.73 92.31 100.00 100.00 91.67 81.82 78.57 83.78 90.00 95.65 96.67 95.24 91.67 75.00 98.18 99.31 95.00 89.47 90.00 100.00 75.00 94.74 91.67 100.00 96.55 100.00 90.48 96.00 NA 89.66 80.00 93.75 92.86 83.33 95.45 91.67 96.55 91.67 95.83 93.33 95.24 94.12 82.35 100.00 96.00 91.67 K alternative_donor CG15321,I_chrX_9578185_9579504,I_chrX_9578185_9579582,I_chrX_9578185_9580671,RI_chrX_9578185_9581011 chrX - chrX_9578185_9579504;chrX_9578185_9579582 chrX_9578185_9579535 chrX_9578085_9578184;chrX_9579583_9579597 90.45 NA 100.00 92.31 NA NA 88.89 87.50 85.71 NA NA 100.00 88.89 90.00 100.00 93.75 NA NA 90.00 91.67 NA NA 85.71 NA NA NA NA NA 87.50 85.71 90.00 NA 100.00 90.91 NA NA NA NA NA 93.75 NA 92.86 80.00 100.00 NA 100.00 NA 80.65 87.50 NA 87.50 NA NA NA 100.00 NA NA 100.00 K alternative_donor Gbeta13F,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,RI_chrX_15755345_15755409 chrX + chrX_15755520_15755598 chrX_15755526_15755598 chrX_15755599_15756919;chrX_15755417_15755519 90.91 91.43 89.23 92.78 90.48 92.31 93.40 90.15 94.92 90.48 90.00 90.91 90.00 90.12 93.55 90.11 97.06 92.86 92.05 91.13 90.20 94.20 91.96 91.30 94.23 95.31 88.89 87.88 82.76 95.74 92.19 85.00 85.71 90.32 87.27 90.20 87.10 92.06 91.53 91.76 80.00 92.91 90.00 88.71 88.89 87.93 90.91 96.30 89.68 96.97 89.77 92.41 90.00 92.11 90.79 88.89 93.22 95.24 K intron_retention Zasp52,I_chr2R_11652341_11652627,RI_chr2R_11652953_11660545,RI_chr2R_11654219_11660545,F_chr2R_11660759_11661284,I_chr2R_11690993_11701987 chr2R - chr2R_11652341_11661320 chr2R_11652340_11652341;chr2R_11661320_11661321 chr2R_11652241_11652340;chr2R_11661321_11661384 2.38 2.08 1.28 2.08 1.82 5.00 6.25 2.44 3.52 2.00 3.77 1.69 3.45 6.90 6.25 2.99 4.17 1.59 3.28 1.54 6.56 2.54 1.97 2.16 0.98 3.12 3.48 4.23 1.96 2.65 0.92 0.00 1.56 4.81 0.91 3.41 4.64 2.04 1.69 1.19 2.94 3.52 0.00 1.94 2.50 0.00 0.79 1.92 4.00 2.38 2.29 3.03 2.70 1.75 2.63 0.91 1.80 3.28 K jcn_only_AA CG40127,I_chr2R_75348_75450 chr2R - chr2R_75348_75450 chr2R_75385_75450 chr2R_75451_75519;chr2R_75282_75347 100.00 100.00 100.00 100.00 100.00 100.00 99.60 99.61 100.00 100.00 100.00 99.78 100.00 100.00 100.00 99.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.61 100.00 100.00 99.26 99.55 100.00 98.95 100.00 99.39 100.00 100.00 100.00 99.32 99.64 99.41 99.58 100.00 100.00 100.00 100.00 100.00 100.00 99.79 100.00 99.71 100.00 99.23 100.00 99.59 100.00 100.00 99.60 K intron_retention PDCD-5 chr3L - chr3L_16224502_16224573 chr3L_16224501_16224502;chr3L_16224573_16224574 chr3L_16224436_16224501;chr3L_16224574_16224642 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 91.67 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 96.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 97.50 96.00 100.00 93.33 100.00 100.00 100.00 100.00 95.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention I_chr3L_1945382_1945647,CG11814 chr3L - chr3L_1951229_1951283 chr3L_1951228_1951229;chr3L_1951283_1951284 chr3L_1950761_1951228;chr3L_1951284_1952182 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 NA 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Traf-like,I_chrX_16309163_16309641,I_chrX_16309212_16309689,I_chrX_16309561_16309641,I_chrX_16309561_16309689,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16309619_16309689;chrX_16309163_16309689 chrX_16309561_16309689 chrX_16309690_16309741;chrX_16309112_16309162 3.92 0.00 0.00 3.70 0.00 0.00 2.94 3.92 3.23 0.00 5.00 2.22 5.00 4.17 3.45 0.00 3.85 3.45 3.33 8.33 4.00 3.23 8.70 0.00 6.25 4.35 0.00 14.29 0.00 5.26 15.52 5.88 4.17 2.22 15.00 15.00 3.33 0.00 0.00 9.68 14.29 5.88 4.55 0.00 7.69 9.09 6.25 7.14 3.92 0.00 6.90 0.00 7.14 0.00 3.03 4.35 3.45 14.81 K intron_retention CG14767,RI_chr2R_4607538_4607606,CG30357,RI_chr2R_4609761_4610761,RI_chr2R_4610372_4610761 chr2R - chr2R_4607538_4610761 chr2R_4607537_4607538;chr2R_4610761_4610762 chr2R_4607438_4607537;chr2R_4610762_4610861 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.23 0.28 1.39 0.00 0.48 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.17 0.42 0.00 0.00 0.00 0.00 0.75 0.65 0.99 0.28 0.51 0.00 0.00 0.00 0.46 0.00 0.98 0.41 0.20 0.00 0.34 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 K alternative_donor gish chr3R + chr3R_12100604_12100675;chr3R_12100598_12100675 chr3R_12100608_12100675 chr3R_12100676_12100891;chr3R_12100535_12100597 45.68 47.00 43.69 41.83 46.38 47.78 47.37 49.67 45.45 35.62 43.48 51.15 40.79 39.53 58.56 57.80 41.56 53.42 45.74 41.34 42.25 44.76 42.14 47.20 51.25 65.00 48.57 47.37 52.00 46.53 45.00 51.02 45.66 47.06 49.04 43.30 52.17 40.91 42.07 40.59 43.48 49.43 47.06 44.74 38.60 40.40 56.10 45.53 41.03 54.41 54.36 45.68 41.51 54.10 51.33 41.56 45.10 42.47 K intron_retention CG10191 chr3L - chr3L_13381679_13381822 chr3L_13381678_13381679;chr3L_13381822_13381823 chr3L_13381393_13381678;chr3L_13381823_13382026 100.00 100.00 98.88 100.00 98.55 98.53 100.00 99.07 99.31 100.00 100.00 99.29 98.46 100.00 100.00 98.99 100.00 98.63 100.00 99.49 100.00 97.83 100.00 100.00 100.00 100.00 98.96 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.95 100.00 100.00 100.00 100.00 99.32 98.21 98.53 100.00 100.00 100.00 100.00 98.12 98.91 100.00 100.00 98.36 99.03 100.00 100.00 100.00 100.00 K intron_retention RpS4,Syx13,RI_chr3L_13037959_13038017,CG11279 chr3L + chr3L_13035469_13035541 chr3L_13035468_13035469;chr3L_13035541_13035542 chr3L_13035210_13035468;chr3L_13035542_13035639 0.05 0.00 0.00 0.09 0.05 0.05 0.09 0.08 0.06 0.08 0.00 0.08 0.02 0.03 0.02 0.11 0.00 0.07 0.02 0.04 0.00 0.10 0.06 0.05 0.06 0.07 0.08 0.25 0.29 0.05 0.09 0.00 0.05 0.07 0.00 0.00 0.06 0.10 0.04 0.09 0.03 0.03 0.00 0.02 0.05 0.09 0.01 0.08 0.11 0.07 0.05 0.11 0.04 0.03 0.04 0.11 0.05 0.05 K cassette Fem-1,RI_chr2R_16552969_16554423 chr2R - chr2R_16552574_16554423 chr2R_16552574_16552868;chr2R_16552969_16554423 chr2R_16552869_16552968 chr2R_16552291_16552573;chr2R_16554424_16554523 2.50 0.00 3.85 3.12 6.25 5.56 4.55 4.35 0.00 4.00 0.00 2.86 5.56 5.56 0.00 4.00 0.00 4.35 5.26 1.82 0.00 2.08 4.55 4.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 4.17 3.70 0.00 0.00 2.50 8.33 6.25 0.00 0.00 0.00 NA 0.00 5.56 5.56 0.00 6.25 2.38 5.26 3.23 0.00 NA 8.00 0.00 3.85 0.00 0.00 K intron_retention chinmo,cpb,mRpL48 chr2L + chr2L_1705115_1705399 chr2L_1705114_1705115;chr2L_1705399_1705400 chr2L_1704943_1705114;chr2L_1705400_1707011 0.87 0.00 0.00 3.15 0.00 1.98 1.71 0.44 1.42 1.92 0.00 0.00 0.00 3.15 0.68 0.00 0.00 3.88 1.15 1.15 0.00 2.11 0.00 0.00 2.90 0.00 2.08 6.94 5.71 0.00 0.77 0.00 0.00 0.90 0.97 0.00 1.59 2.44 0.78 1.43 4.17 0.87 0.00 0.00 3.70 2.29 2.35 2.99 0.80 1.94 0.00 1.39 0.00 0.00 0.00 0.00 1.63 2.11 K intron_retention RhoBTB,RI_chr3L_20370940_20371530,I_chr3L_20374844_20374891 chr3L + chr3L_20372949_20373010 chr3L_20372948_20372949;chr3L_20373010_20373011 chr3L_20372412_20372948;chr3L_20373011_20373269 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 6.12 0.00 3.45 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 37.14 1.59 2.44 0.00 9.52 0.00 13.64 6.45 0.00 2.78 0.00 0.00 3.12 0.00 0.00 0.00 2.56 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 2.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon CG10737 chr2R + chr2R_15064249_15065323 chr2R_15064249_15064445 chr2R_15065324_15065754 chr2R_15064446_15064932 chr2R_15064096_15064248 2.95 2.48 2.34 5.65 3.66 1.96 1.13 2.87 2.95 5.36 2.86 6.44 8.57 3.88 2.65 2.15 3.54 2.61 2.86 5.04 2.25 3.64 3.29 2.34 3.85 2.00 3.48 5.48 4.60 2.88 2.56 2.04 3.10 3.24 4.40 8.33 3.08 2.22 2.24 3.57 2.21 3.12 3.81 3.62 1.41 3.51 2.61 1.89 2.60 3.60 3.03 4.65 0.93 3.42 2.94 2.82 1.64 1.03 K jcn_only_AA mei-218,mei-217 chrX - chrX_17035515_17036834 chrX_17036741_17036834 chrX_17036835_17036969 96.97 NA NA NA NA NA 100.00 NA NA NA NA 95.65 NA NA NA 96.97 100.00 NA NA NA NA 90.91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD spi,I_chr2L_19569183_19577185,I_chr2L_19569227_19572142,I_chr2L_19569227_19577173,mir-2a-2,mir-2a-1,mir-2b-2 chr2L - chr2L_19569227_19577185 chr2L_19569227_19577173 chr2L_19569127_19569226;chr2L_19577186_19577273 3.51 2.33 3.45 3.57 10.71 3.33 2.50 1.41 5.56 NA 4.35 5.74 6.67 5.71 6.67 0.00 4.65 4.17 2.63 4.30 0.00 3.70 2.44 2.63 1.92 6.52 1.61 2.04 7.87 0.00 3.23 3.23 NA 5.06 0.00 3.57 7.69 NA 3.12 4.24 3.33 5.71 2.63 0.00 0.00 2.22 3.61 8.00 8.79 2.17 1.82 8.51 19.23 0.00 5.26 2.70 4.00 4.76 K alternative_donor Imp,I_chrX_10699490_10700695,RI_chrX_10699665_10700501,RI_chrX_10699665_10700695 chrX - chrX_10699665_10700474;chrX_10699665_10700501 chrX_10699665_10700695 chrX_10699565_10699664;chrX_10700696_10700795 14.29 20.00 14.29 7.14 NA 0.00 24.00 7.69 10.34 NA 12.50 10.53 33.33 0.00 11.11 8.33 14.29 11.11 14.29 36.36 20.00 NA 20.00 NA NA 42.86 14.29 NA NA NA 11.11 NA NA 17.39 NA NA NA NA NA NA NA 0.00 10.00 NA NA NA NA 20.00 26.09 NA 20.00 NA NA NA 28.57 NA NA NA K jcn_only_AA CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20825513_20825667 chr2L_20825513_20825658 chr2L_20825471_20825512;chr2L_20825668_20825758 8.28 15.62 8.00 NA NA NA 2.70 4.35 6.25 NA 16.22 0.00 NA NA 20.00 10.81 0.00 8.70 NA 5.71 9.09 NA 12.50 2.86 NA NA 13.79 12.12 8.70 5.56 NA 14.29 6.98 9.09 7.41 NA 12.50 13.04 8.11 8.45 13.64 5.26 NA 6.90 6.45 5.36 6.25 5.71 3.57 12.50 13.64 4.17 19.05 11.76 4.55 10.87 8.51 5.88 K intron_retention CG6294,CG6299,I_chrX_15359667_15359763 chrX + chrX_15360027_15360101 chrX_15360026_15360027;chrX_15360101_15360102 chrX_15359764_15360026;chrX_15360102_15360157 2.58 6.52 2.22 12.50 3.03 5.56 8.33 4.88 6.02 0.00 2.78 5.26 4.17 10.42 1.52 8.00 5.00 0.00 4.55 5.63 3.23 0.00 0.00 0.00 8.33 6.98 14.29 NA 0.00 0.00 2.38 0.00 2.33 5.56 0.00 4.35 0.00 0.00 0.00 4.65 0.00 4.88 7.89 1.89 2.99 3.03 0.00 3.85 4.76 0.00 2.17 0.00 0.00 0.00 1.85 2.00 0.00 2.25 K cassette CG3114,RI_chrX_168562_168685 chrX - chrX_165909_167215;chrX_165647_167215 chrX_165909_166454,chrX_165647_166454;chrX_166917_167215 chrX_166455_166916 chrX_165521_165646;chrX_167216_167420 28.18 29.41 21.43 25.00 NA 28.57 7.69 18.75 30.43 66.67 25.00 23.81 20.00 25.00 27.78 43.75 25.00 30.00 33.33 40.74 18.18 29.41 39.13 30.77 18.18 28.57 33.33 33.33 38.46 33.33 33.33 30.00 47.06 26.32 21.43 50.00 31.82 41.67 22.73 15.00 12.50 32.00 75.00 30.00 25.00 30.00 25.00 20.00 25.00 10.00 37.50 36.36 20.00 27.27 25.00 22.22 23.08 22.22 K jcn_only_AA CG6762,I_chrX_17751392_17751499,I_chrX_17751392_17751520 chrX + chrX_17751392_17751524;chrX_17751392_17751535 chrX_17751392_17751505 chrX_17751292_17751391;chrX_17751536_17751560 58.62 NA NA NA NA NA 57.14 75.00 65.00 NA NA NA NA NA NA 50.00 NA NA NA 60.71 NA 54.55 72.73 60.00 NA NA 50.00 58.62 65.00 NA NA 63.64 50.00 NA NA NA 74.07 45.00 58.62 61.90 56.52 62.50 NA NA 33.33 47.50 52.38 46.15 59.26 57.14 52.38 NA 67.86 78.26 NA 80.77 64.52 44.44 K intron_retention Inos,I_chr2R_3344353_3345211 chr2R - chr2R_3343275_3343338 chr2R_3343274_3343275;chr2R_3343338_3343339 chr2R_3342807_3343274;chr2R_3343339_3343581 0.32 0.20 0.32 0.48 0.23 0.17 0.46 0.52 0.29 0.08 0.15 0.30 0.42 0.25 0.42 0.44 0.27 0.45 0.37 0.28 0.38 0.42 0.34 0.35 0.21 0.37 0.74 0.87 0.16 0.30 0.18 0.39 0.15 0.45 0.35 0.42 0.30 0.19 0.22 0.30 0.21 0.34 0.40 0.18 0.29 0.28 0.22 0.16 0.56 0.41 0.36 0.42 0.37 0.26 0.32 0.24 0.33 0.30 K alternative_donor CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3018025_3018274;chr2L_3018025_3018163;chr2L_3018025_3018085;chr2L_3018025_3018278 chr2L_3018025_3018081 chr2L_3017982_3018024;chr2L_3018279_3018287 22.22 0.00 NA 20.00 NA NA 33.33 40.00 28.57 NA NA 36.36 NA 50.00 0.00 66.67 25.00 NA NA 16.67 NA 33.33 NA 33.33 NA NA NA NA NA NA 11.11 0.00 NA 13.33 NA NA NA NA NA 8.33 33.33 22.22 33.33 22.22 0.00 30.00 NA 16.67 14.29 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention lilli chr2L + chr2L_2951557_2951639 chr2L_2951556_2951557;chr2L_2951639_2951640 chr2L_2951470_2951556;chr2L_2951640_2951805 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 8.33 0.00 0.00 1.92 0.00 0.00 2.27 0.00 0.00 0.00 0.00 3.28 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 3.33 2.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pitslre,RI_chr3L_20766064_20766893,I_chr3L_20766311_20766893,I_chr3L_20766773_20766893 chr3L + chr3L_20766773_20766893 chr3L_20766772_20766773;chr3L_20766893_20766894 chr3L_20766692_20766772;chr3L_20766894_20766993 90.91 81.82 77.78 76.47 NA 78.57 94.44 79.31 96.00 88.89 NA 95.45 100.00 100.00 83.33 100.00 92.86 92.31 94.12 85.19 90.91 90.91 92.86 77.27 91.67 93.75 86.36 100.00 94.12 85.71 66.67 91.67 100.00 94.12 90.00 91.67 75.00 92.86 86.96 81.08 100.00 95.45 90.00 95.45 90.00 93.75 85.71 90.00 94.74 100.00 83.33 90.00 90.00 NA 87.50 86.67 100.00 90.00 K jcn_only_AA CG18081,I_chr3L_15827984_15828396 chr3L - chr3L_15827980_15828293 chr3L_15827984_15828293 chr3L_15828294_15828459;chr3L_15827948_15827979 93.16 93.94 92.25 94.68 89.89 94.74 94.44 92.79 93.87 98.11 90.11 96.28 94.49 94.69 92.86 93.95 95.40 96.00 95.27 95.58 93.14 97.06 92.81 93.10 98.51 92.25 90.53 89.19 86.11 91.80 92.31 94.44 95.56 93.68 92.59 93.51 91.06 91.87 97.32 93.16 91.89 95.33 90.32 90.76 90.91 93.28 90.07 87.76 96.31 92.50 96.88 95.24 89.29 94.87 89.33 92.31 95.96 91.53 K jcn_only_AA Pcf11,RI_chr2R_10753287_10754988 chr2R - chr2R_10753272_10754988;chr2R_10753287_10754988;chr2R_10753557_10754988;chr2R_10753239_10754988 chr2R_10753581_10754988 chr2R_10754989_10755088;chr2R_10753187_10753238 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 2.08 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.17 NA 0.00 NA 3.57 0.00 NA NA 0.00 0.00 0.00 2.13 NA 2.04 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K intron_retention CG1434 chrX + chrX_14133981_14134074 chrX_14133980_14133981;chrX_14134074_14134075 chrX_14133706_14133980;chrX_14134075_14134188 43.75 NA 45.45 60.00 NA NA 53.85 58.82 39.39 NA NA 55.00 NA NA 42.86 43.75 NA NA NA 44.00 NA 36.36 77.78 28.57 NA NA NA NA NA NA 35.71 NA NA 58.82 NA NA NA NA NA NA NA 33.33 NA NA 50.00 NA NA NA 37.04 NA NA NA 50.00 NA 38.46 NA 43.75 38.46 N alternative_donor Irc,I_chr3R_12830023_12830084,CG8907 chr3R + chr3R_12830775_12830891 chr3R_12830829_12830891 chr3R_12830892_12831073;chr3R_12830588_12830774 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 K intron_retention stj chr2R + chr2R_9695681_9696779 chr2R_9695680_9695681;chr2R_9696779_9696780 chr2R_9695404_9695680;chr2R_9696780_9697174 3.03 0.00 6.25 19.15 10.00 0.00 3.77 10.71 15.56 0.00 NA 7.84 0.00 0.00 0.00 0.00 31.58 0.00 15.00 6.25 0.00 18.92 0.00 0.00 7.41 8.11 3.28 16.67 6.06 3.33 6.45 NA 4.76 15.56 NA 3.28 2.53 0.00 0.00 5.56 0.00 0.00 NA 3.03 NA 0.00 0.00 0.00 7.02 0.00 7.69 0.00 0.00 NA 3.45 0.00 0.00 0.00 K intron_retention Not1,I_chr2R_5463624_5463682 chr2R - chr2R_5456428_5456489 chr2R_5456427_5456428;chr2R_5456489_5456490 chr2R_5456068_5456427;chr2R_5456490_5457661 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG9306,I_chr2L_13370565_13370841,I_chr2L_13370795_13370841 chr2L - chr2L_13370764_13370853 chr2L_13370764_13370841 chr2L_13370696_13370763;chr2L_13370854_13370918 100.00 100.00 98.48 100.00 100.00 98.41 100.00 100.00 100.00 100.00 100.00 99.39 100.00 100.00 98.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.09 98.44 100.00 100.00 100.00 100.00 100.00 100.00 99.25 100.00 100.00 100.00 99.54 99.15 97.47 99.30 100.00 100.00 100.00 99.41 99.53 100.00 100.00 100.00 99.35 100.00 100.00 99.24 100.00 99.41 100.00 98.33 K intron_retention br,I_chrX_1517022_1518170,chrX_1531825_1532171.0,chrX_1532359_1533289.0,chrX_1533577_1534629.0,chrX_1535554_1536485.0,chrX_1539850_1540090.0,chrX_1540212_1541396.0,chrX_1544237_1547430.0,chrX_1547632_1547887.0,noncoding_21384,dor chrX + chrX_1531368_1548424 chrX_1531367_1531368;chrX_1548424_1548425 chrX_1531317_1531367;chrX_1548425_1549083 9.76 NA NA 20.00 0.00 12.50 17.65 16.67 10.87 NA 0.00 16.22 NA NA 0.00 23.53 NA NA NA 7.14 0.00 NA 9.52 16.67 NA 14.29 15.38 NA NA 0.00 0.00 NA 0.00 16.67 11.76 NA 0.00 NA 0.00 0.00 NA 11.76 NA NA NA NA NA NA 11.76 NA 0.00 NA 0.00 NA 10.00 NA NA 0.00 K intron_retention Amph,I_chr2R_8498227_8498492 chr2R + chr2R_8498227_8498513 chr2R_8498226_8498227;chr2R_8498513_8498514 chr2R_8498127_8498226;chr2R_8498514_8498592 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.44 6.25 1.82 2.86 0.00 0.00 0.00 1.08 0.00 7.14 0.00 4.17 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5399 chr3R + chr3R_11521802_11521865 chr3R_11521801_11521802;chr3R_11521865_11521866 chr3R_11521471_11521801;chr3R_11521866_11521907 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 96.43 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention su(f),I_chrXHet_77570_78035 chrXHet + chrXHet_78871_79319 chrXHet_78870_78871;chrXHet_79319_79320 chrXHet_78763_78870;chrXHet_79320_79620 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.88 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.70 0.00 4.17 0.99 1.94 0.00 0.00 0.00 3.03 13.16 0.00 0.00 3.28 3.85 0.00 1.82 1.41 0.00 0.00 0.00 0.00 0.00 0.00 3.12 1.06 6.25 4.82 0.99 1.72 1.27 2.94 0.00 3.03 0.00 0.00 0.00 0.00 1.64 6.90 N alternative_donor CG6293,Bruce chr3R - chr3R_6136241_6136995;chr3R_6136241_6137183 chr3R_6136241_6137129 chr3R_6135621_6136240;chr3R_6137184_6137328 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.07 0.22 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.13 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27805342_27810955;chr3R_27805342_27811214 chr3R_27805342_27811232 chr3R_27805247_27805341;chr3R_27811233_27811433 0.00 3.33 0.00 1.89 6.67 3.03 0.00 0.00 1.01 0.00 0.00 0.00 2.63 2.08 0.00 0.00 NA 0.00 0.00 0.00 2.56 7.41 0.00 0.00 NA 0.00 0.00 NA 16.00 0.00 0.00 NA 5.41 0.00 4.17 3.03 0.00 0.00 3.03 1.85 NA 2.50 3.85 0.00 NA NA 0.00 0.00 0.00 2.78 0.00 0.00 NA NA 3.51 0.00 0.00 0.00 K jcn_only_AD Hil chr2R - chr2R_16502439_16505634 chr2R_16502439_16505571 chr2R_16502011_16502438;chr2R_16505635_16505711 71.94 NA 55.00 NA NA NA NA NA 48.65 77.78 NA 80.95 NA NA NA 52.38 NA NA NA 69.23 NA NA 71.88 NA NA NA NA NA 77.42 50.00 NA 65.00 95.74 NA 86.21 90.91 48.72 NA 75.00 61.11 90.91 62.07 NA 48.28 NA 86.96 39.13 90.48 72.00 NA NA NA NA NA NA NA NA 94.12 K intron_retention CG11107 chr2R + chr2R_3278127_3278184 chr2R_3278126_3278127;chr2R_3278184_3278185 chr2R_3277777_3278126;chr2R_3278185_3278509 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention vlc chr2R + chr2R_1589953_1590371 chr2R_1589952_1589953;chr2R_1590371_1590372 chr2R_1589914_1589952;chr2R_1590372_1590451 80.00 NA NA 75.00 NA NA NA 88.89 72.73 NA NA 80.00 NA NA NA 84.62 NA 65.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA 63.64 NA NA NA NA NA NA NA 87.50 88.89 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG3036 chr2L + chr2L_4902906_4902973 chr2L_4902910_4902973 chr2L_4902974_4903889;chr2L_4902664_4902905 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 2.94 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 1.35 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD I_chrX_16266436_16268958,Fur2,I_chrX_16267221_16268573,I_chrX_16267868_16268958,RI_chrX_16267905_16268958,I_chrX_16270205_16270272,I_chrX_16274795_16274867 chrX + chrX_16267208_16268958 chrX_16267221_16268958 chrX_16268959_16269058;chrX_16267150_16267207 79.78 86.21 NA 72.73 NA NA 70.83 68.89 71.79 90.62 75.00 70.59 75.00 68.97 69.57 82.14 78.95 NA NA 74.58 82.61 73.13 80.60 84.91 75.00 71.43 69.05 82.86 85.71 85.00 77.42 NA 86.05 72.22 67.74 84.44 81.48 81.82 82.61 93.10 83.33 74.36 NA 85.07 NA 84.21 95.00 90.62 73.77 76.92 81.13 72.22 85.00 NA 74.07 96.15 70.83 92.59 K alternative_acceptor CG40042 chr2LHet - chr2LHet_168170_168233 chr2LHet_168188_168233 chr2LHet_168234_168403;chr2LHet_167980_168169 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.18 0.00 K multi_cassette Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24348983_24349755 chr3R_24348983_24349248;chr3R_24349420_24349501;chr3R_24349697_24349755 chr3R_24349249_24349419;chr3R_24349502_24349696 chr3R_24348417_24348982;chr3R_24349756_24349939 37.14 38.89 25.00 22.86 31.03 38.71 16.33 25.71 34.25 27.27 33.33 25.00 16.95 28.12 23.68 36.00 16.00 35.71 30.77 36.63 22.22 37.14 47.92 50.00 35.90 20.00 48.57 22.22 25.00 43.75 30.00 38.46 61.54 30.95 41.18 42.86 45.61 53.85 55.56 37.74 40.00 28.21 19.35 44.00 42.86 48.39 57.14 41.94 28.99 44.44 53.66 58.33 56.52 47.83 29.41 58.82 57.50 45.00 K alternative_donor alpha-Cat,I_chr3L_23319861_23321813,I_chr3L_23327841_23328002 chr3L - chr3L_23322024_23322329 chr3L_23322024_23322078 chr3L_23321814_23322023;chr3L_23322330_23322498 100.00 100.00 100.00 100.00 100.00 100.00 99.06 99.14 99.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.78 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG13937,RI_chr3L_1877663_1877719 chr3L - chr3L_1881477_1882999;chr3L_1881549_1882999 chr3L_1881558_1882999 chr3L_1883000_1883037;chr3L_1881129_1881476 44.44 NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA 66.67 NA NA NA 44.44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA K intron_retention loqs chr2L + chr2L_13384023_13384656 chr2L_13384022_13384023;chr2L_13384656_13384657 chr2L_13383737_13384022;chr2L_13384657_13384662 60.00 NA NA 87.50 NA NA NA NA 88.89 NA NA 47.37 NA NA NA 77.78 NA NA NA 56.25 NA NA 53.85 50.00 NA NA NA NA NA NA 81.82 NA NA 66.67 NA NA NA NA NA 57.14 60.00 50.00 NA NA NA 63.64 NA 72.73 NA 87.50 NA NA NA NA 55.56 60.00 NA NA K intron_retention MED1 chr3L - chr3L_21623977_21624032 chr3L_21623976_21623977;chr3L_21624032_21624033 chr3L_21623908_21623976;chr3L_21624033_21625939 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 94.44 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 98.68 100.00 100.00 100.00 100.00 100.00 100.00 97.67 98.75 100.00 96.67 100.00 100.00 100.00 97.50 100.00 99.03 100.00 97.83 96.30 100.00 96.15 100.00 100.00 100.00 100.00 100.00 N cassette CG1444,CG1514,Ykt6 chrX + chrX_7803958_7804885 chrX_7803958_7804741;chrX_7804818_7804885 chrX_7804742_7804817 chrX_7803911_7803957;chrX_7804886_7805226 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Sap47,I_chr3R_11761076_11761674,I_chr3R_11761436_11761674,F_chr3R_11761635_11761698,E_chr3R_11761635_11761703 chr3R + chr3R_11761307_11761561;chr3R_11761307_11761674;chr3R_11761307_11761703 chr3R_11761307_11761698 chr3R_11761299_11761306;chr3R_11761704_11761774 5.00 7.41 4.17 7.50 5.00 9.09 2.94 4.08 1.49 10.00 0.00 2.00 0.00 13.79 6.67 2.08 3.70 4.00 5.88 1.59 0.00 26.67 5.00 3.33 5.00 4.00 3.23 9.09 10.00 6.45 2.50 5.26 9.09 2.04 4.17 6.45 8.00 4.17 7.69 6.52 5.88 1.85 4.17 6.06 4.55 6.25 7.69 3.33 4.26 4.17 5.00 9.09 6.67 5.56 5.71 12.50 10.00 2.08 K alternative_acceptor ena chr2R + chr2R_15047541_15047681;chr2R_15047541_15047684;chr2R_15047541_15047753 chr2R_15047541_15047756 chr2R_15047496_15047540;chr2R_15047757_15048407 1.54 0.00 1.94 0.57 1.83 3.00 1.06 2.41 0.38 3.03 1.82 2.37 1.52 0.00 2.24 1.14 3.03 1.69 0.00 2.20 0.88 0.71 2.48 1.80 1.20 1.19 0.94 0.00 1.37 0.70 1.03 1.54 0.72 1.73 0.00 1.14 0.42 1.00 2.44 1.73 0.00 0.83 1.27 2.48 2.06 0.00 1.27 0.00 2.00 2.47 3.54 3.45 2.99 1.61 2.11 3.57 7.94 1.89 N multi_cassette CG1674,I_chr4_253475_257020,F_chr4_258186_259747,F_chr4_259865_260939,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_254972_260939 chr4_254972_255489;chr4_255571_257020;chr4_257102_260939 chr4_255490_255570;chr4_257021_257101 chr4_254893_254971;chr4_260940_261024 100.00 100.00 100.00 41.67 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 100.00 NA NA NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 K intron_retention Pld,I_chr2R_2130639_2136916,RI_chr2R_2138358_2141112 chr2R + chr2R_2129606_2130126 chr2R_2129605_2129606;chr2R_2130126_2130127 chr2R_2129572_2129605;chr2R_2130127_2130224 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA 92.31 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA K intron_retention Tsp42Ed chr2R - chr2R_2897551_2897607 chr2R_2897550_2897551;chr2R_2897607_2897608 chr2R_2897285_2897550;chr2R_2897608_2897805 0.19 0.00 0.00 0.83 0.00 0.00 0.61 0.71 0.46 0.00 0.00 0.67 0.00 0.37 0.00 1.11 0.38 0.00 0.00 0.30 0.00 0.26 0.00 0.00 0.40 0.38 0.74 0.86 2.39 0.30 0.00 0.22 0.00 0.00 0.47 0.50 0.00 0.22 0.00 0.21 0.81 1.12 0.46 0.00 0.19 0.42 0.10 0.00 0.00 0.00 0.57 0.00 0.00 0.10 0.29 0.00 0.00 0.31 K alternative_acceptor CG10874 chr2L - chr2L_2190644_2190706 chr2L_2190647_2190706 chr2L_2190707_2190784;chr2L_2189869_2190643 9.09 9.09 9.52 9.09 13.89 9.09 11.32 11.90 6.94 6.67 12.50 9.52 8.33 7.41 5.88 12.20 8.82 11.63 9.09 7.94 5.00 13.04 13.04 7.59 12.82 9.30 8.93 9.09 10.26 12.12 6.25 3.45 7.41 9.52 13.16 9.52 8.45 7.55 9.43 6.38 6.06 8.24 2.70 6.98 14.58 8.51 12.50 15.79 10.91 6.25 8.33 8.33 16.00 10.00 6.82 7.55 10.47 8.57 K cassette CG31531,I_chr3R_523978_525892,I_chr3R_523978_526879 chr3R + chr3R_523978_526879 chr3R_523978_525892;chr3R_526050_526879 chr3R_525893_526049 chr3R_523878_523977;chr3R_526880_526979 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 96.55 100.00 97.50 100.00 94.44 100.00 100.00 93.75 100.00 100.00 100.00 100.00 96.55 97.87 100.00 94.74 100.00 100.00 100.00 86.67 98.04 95.83 100.00 98.72 97.30 96.67 97.06 100.00 100.00 100.00 98.33 96.55 97.92 100.00 100.00 96.97 97.37 100.00 96.43 97.30 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 98.36 K alternative_donor Dsp1,I_chrX_16231287_16231413 chrX + chrX_16227752_16228333;chrX_16227804_16228333;chrX_16227677_16228333;chrX_16227797_16228333 chrX_16228273_16228333 chrX_16228334_16228446;chrX_16227667_16227676 79.17 72.41 75.86 80.49 66.67 64.00 86.67 69.49 75.00 83.33 83.33 72.58 81.08 69.70 78.57 80.65 64.29 85.19 73.81 72.22 68.42 84.62 78.43 86.21 83.87 79.17 82.05 93.75 73.91 86.67 84.85 71.43 70.83 76.19 90.48 84.85 80.00 76.47 67.65 79.59 83.33 79.31 80.00 82.86 83.33 84.21 80.95 71.43 74.60 74.07 89.19 76.92 68.75 73.33 76.47 66.67 80.00 80.00 N alternative_acceptor CG8108,EI_chr3L_9859462_9859590,chr3L_9859594_9859878.0 chr3L + chr3L_9859462_9860413;chr3L_9859462_9859590 chr3L_9859462_9860377 chr3L_9859414_9859461;chr3L_9860414_9860844 1.33 1.04 1.61 1.33 1.64 1.69 1.30 2.25 0.55 2.17 1.61 0.76 2.00 1.67 1.14 1.67 1.67 1.18 3.12 0.88 0.00 2.70 0.71 1.05 1.39 1.85 1.04 1.75 0.00 1.49 7.75 0.00 0.00 1.10 1.43 16.25 0.72 1.01 0.64 1.08 0.00 0.75 1.72 1.52 0.00 1.30 1.08 2.04 0.87 1.43 0.79 1.85 2.38 1.23 1.39 1.18 1.85 1.43 K intron_retention MED10,I_chr3L_16225377_16225479 chr3L + chr3L_16225424_16225479 chr3L_16225423_16225424;chr3L_16225479_16225480 chr3L_16225129_16225423;chr3L_16225480_16225579 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 3.17 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Idgf1,Idgf2 chr2L + chr2L_16445990_16446060 chr2L_16445989_16445990;chr2L_16446060_16446061 chr2L_16445220_16445989;chr2L_16446061_16446862 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.15 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG14299 chr3R - chr3R_14580934_14581062 chr3R_14580999_14581062 chr3R_14581063_14581206;chr3R_14580821_14580933 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K intron_retention Mgat2,I_chr3R_25842597_25842859,I_chr3R_25845406_25846373 chr3R - chr3R_25842597_25843987 chr3R_25842596_25842597;chr3R_25843987_25843988 chr3R_25842497_25842596;chr3R_25843988_25844128 6.17 0.00 6.67 11.76 0.00 0.00 5.88 0.00 8.33 NA 0.00 9.09 8.33 0.00 8.33 6.90 0.00 7.41 4.76 7.94 0.00 15.38 5.71 13.64 0.00 9.09 4.65 16.67 16.67 6.90 3.12 4.76 11.54 9.09 0.00 11.54 7.69 7.14 10.87 17.02 NA 2.33 NA 0.00 0.00 13.33 2.86 4.76 0.00 6.67 6.45 0.00 0.00 7.41 0.00 4.17 8.70 0.00 K jcn_only_AA Pino,I_chr2L_1118700_1128128,RI_chr2L_1123440_1128128,RI_chr2L_1128073_1128128 chr2L - chr2L_1117517_1128128 chr2L_1128073_1128128 chr2L_1128129_1128228;chr2L_1117444_1117516 1.92 2.17 2.56 0.00 2.13 0.00 1.30 1.56 1.50 1.16 5.00 4.05 3.23 3.12 2.63 1.64 0.00 8.00 5.41 1.82 3.45 1.01 1.20 1.87 5.26 0.00 0.78 1.08 4.60 1.27 10.26 1.92 4.55 6.56 5.13 0.00 0.94 3.57 2.04 2.13 0.00 4.35 5.88 2.08 3.77 1.28 1.37 0.00 1.39 0.00 0.00 3.61 1.61 1.54 2.22 3.00 0.00 7.27 K intron_retention CG2701,RI_chrX_2612780_2612845,ttm50 chrX - chrX_2612784_2612845 chrX_2612783_2612784;chrX_2612845_2612846 chrX_2611673_2612783;chrX_2612846_2612945 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 2.90 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention pix,I_chr3L_8967436_8967756 chr3L - chr3L_8966502_8966560 chr3L_8966501_8966502;chr3L_8966560_8966561 chr3L_8965785_8966501;chr3L_8966561_8967171 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG5591 chr2R + chr2R_19789479_19789554 chr2R_19789479_19789542 chr2R_19787515_19789478;chr2R_19789555_19789687 97.30 NA NA 100.00 NA NA 96.30 100.00 96.67 NA NA 100.00 NA NA NA 96.88 NA 100.00 95.00 95.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 95.00 NA NA NA 95.65 NA NA 100.00 NA NA NA NA NA NA 97.30 96.67 NA NA NA NA NA NA 100.00 NA K intron_retention CG9018 chr3L - chr3L_2235973_2236049 chr3L_2235972_2235973;chr3L_2236049_2236050 chr3L_2235829_2235972;chr3L_2236050_2236729 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 K alternative_acceptor plx,noncoding_14842 chr3R + chr3R_1511993_1512762;chr3R_1511993_1512878 chr3R_1511993_1512866 chr3R_1511864_1511992;chr3R_1512879_1513091 14.29 10.00 9.09 13.33 16.67 NA 14.29 16.67 11.11 NA 28.57 10.00 14.29 11.11 15.38 18.75 14.29 14.29 8.33 11.11 16.67 NA 12.50 25.00 NA 10.00 25.00 NA 25.00 14.29 9.09 NA 10.00 11.11 25.00 20.00 16.67 14.29 16.67 9.09 NA 7.14 8.33 16.67 NA 16.67 NA 9.09 14.29 25.00 20.00 12.50 NA NA 16.67 NA NA 0.00 N intron_retention CG32809,I_chrX_1576815_1577129,I_chrX_1577031_1577129,CEI_chrX_1579569_1579679,RI_chrX_1585391_1586471,I_chrX_1589508_1589564 chrX - chrX_1569288_1569351 chrX_1569287_1569288;chrX_1569351_1569352 chrX_1567907_1569287;chrX_1569352_1571098 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 78.79 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Cdc42,I_chrX_19591186_19591967,I_chrX_19591567_19591967,I_chrX_19591671_19591967 chrX + chrX_19591259_19591967;chrX_19591567_19591967 chrX_19591186_19591967 chrX_19591968_19592067;chrX_19591086_19591185 0.34 0.13 0.80 0.43 0.87 0.69 0.59 0.66 0.44 0.22 0.00 0.55 0.65 0.40 0.33 0.32 0.52 0.55 0.23 0.50 0.13 0.00 0.35 0.23 0.41 0.35 0.34 0.14 0.80 0.61 0.70 0.27 0.23 0.35 0.00 0.19 0.23 0.27 0.35 0.21 0.29 0.40 0.47 0.11 0.67 0.15 0.34 0.38 0.36 0.00 0.00 0.32 0.38 0.00 0.49 0.14 0.21 0.00 K jcn_only_AA Gprk1,R_chr2R_238724_265876,RI_chr2R_357455_358274 chr2R - chr2R_210444_223881 chr2R_210463_223881 chr2R_223882_223902;chr2R_210281_210443 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 2.50 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 4.35 NA NA NA NA NA NA NA 3.33 0.00 4.76 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA NA 4.76 NA 5.00 K intron_retention CoRest,I_chrX_19416977_19417035 chrX + chrX_19416431_19417035 chrX_19416430_19416431;chrX_19417035_19417036 chrX_19416424_19416430;chrX_19417036_19417135 30.84 29.17 35.29 33.33 53.33 NA 41.67 25.00 39.29 NA 41.67 29.17 NA NA 36.36 50.00 NA NA NA 42.86 50.00 45.83 35.48 33.33 NA 28.57 26.09 NA 28.57 29.41 NA NA 26.09 40.00 23.81 20.00 24.14 27.59 29.63 30.00 NA 48.15 NA 14.29 14.29 12.50 NA 33.33 31.25 22.22 30.43 NA NA NA 35.71 23.53 41.67 40.00 K intron_retention Crag,I_chrX_8494280_8494352 chrX + chrX_8494280_8494342 chrX_8494279_8494280;chrX_8494342_8494343 chrX_8494180_8494279;chrX_8494343_8495559 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor I_chr3L_834336_834491,CG13887,Gr61a chr3L + chr3L_837946_838048;chr3L_837946_838021 chr3L_837946_838012 chr3L_837877_837945;chr3L_838049_838624 10.71 11.36 10.42 9.43 4.76 12.77 12.12 9.09 6.72 10.71 9.52 11.24 8.11 14.58 19.61 8.51 14.29 11.90 8.16 9.03 14.81 10.45 19.23 17.39 37.78 37.74 47.37 15.38 8.65 11.11 20.63 4.76 6.15 6.90 21.74 29.27 9.09 11.11 20.83 8.41 9.40 7.21 10.26 10.14 1.61 4.63 18.52 1.75 6.35 16.67 31.58 13.11 28.57 36.36 9.76 18.18 7.41 4.55 K intron_retention alphaPS4 chr2R + chr2R_11148765_11148828 chr2R_11148764_11148765;chr2R_11148828_11148829 chr2R_11148635_11148764;chr2R_11148829_11149191 0.00 NA NA 10.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA 1.22 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA 0.00 NA K intron_retention smid,I_chr3L_7375166_7375310,I_chr3L_7375435_7375508 chr3L + chr3L_7375435_7375486 chr3L_7375434_7375435;chr3L_7375486_7375487 chr3L_7375335_7375434;chr3L_7375487_7375574 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG17549,R_chr2L_19388305_19388473,RI_chr2L_19388570_19389427,I_chr2L_19388570_19389922 chr2L - chr2L_19388570_19389764;chr2L_19388570_19389926;chr2L_19388570_19389935 chr2L_19388570_19389427 chr2L_19388474_19388569;chr2L_19389936_19390022 28.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG12082,I_chr3L_3148062_3148262 chr3L - chr3L_3148087_3148248 chr3L_3148135_3148248 chr3L_3148249_3148343;chr3L_3147532_3148086 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA 87.50 100.00 NA 87.50 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K alternative_donor CG5059,I_chr3L_20509233_20511440,I_chr3L_20509985_20510360 chr3L - chr3L_20509233_20512316 chr3L_20509233_20512067 chr3L_20509133_20509232;chr3L_20512317_20512503 90.48 97.14 91.49 95.31 87.88 92.31 95.83 95.92 94.95 94.12 92.31 90.00 90.79 95.12 89.80 90.41 90.70 97.44 92.73 92.62 96.77 57.78 89.19 90.48 84.62 92.45 97.78 80.00 74.29 84.62 91.30 82.61 84.00 90.00 89.29 85.37 90.24 94.44 93.75 85.42 87.50 87.18 97.44 83.33 94.44 86.11 94.00 87.50 95.51 80.56 89.13 92.59 81.82 78.12 93.75 96.97 90.00 84.00 K alternative_donor CG5933 chr3R + chr3R_19858412_19858481 chr3R_19858414_19858481 chr3R_19858482_19859975;chr3R_19858120_19858411 100.00 NA NA 100.00 NA NA 87.50 91.67 100.00 NA NA 92.31 NA NA NA 100.00 NA 88.89 NA 100.00 NA 90.00 NA NA NA 100.00 NA NA 87.50 100.00 87.50 100.00 NA 92.31 NA NA NA NA NA 100.00 100.00 88.89 NA 100.00 100.00 88.89 NA 91.67 100.00 NA NA NA NA NA NA NA NA NA K intron_retention I_chr2R_8641633_8641971,ox,I_chr2R_8648027_8648303 chr2R - chr2R_8644737_8644802 chr2R_8644736_8644737;chr2R_8644802_8644803 chr2R_8644604_8644736;chr2R_8644803_8645003 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.20 0.00 0.35 0.00 0.50 0.88 0.00 0.00 0.00 0.00 2.70 0.00 0.29 0.00 0.00 0.59 0.00 0.75 0.00 0.00 0.33 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Spargel,RI_chr3R_252723_254271,noncoding_14534 chr3R - chr3R_252348_252444 chr3R_252375_252444 chr3R_252445_252550;chr3R_252282_252347 88.24 87.10 87.88 85.19 84.71 88.89 88.35 88.59 89.35 94.00 91.30 89.47 84.06 79.31 87.91 88.89 82.67 89.41 91.09 85.46 93.24 91.67 86.44 88.24 93.02 94.03 80.00 84.62 86.57 83.65 92.59 84.21 87.67 88.36 82.09 91.53 86.67 87.32 83.95 92.75 84.91 90.34 89.33 88.06 82.93 86.54 89.66 82.32 88.77 92.50 86.17 90.48 90.00 86.67 91.89 89.47 94.29 82.30 K jcn_only_AD CG12576,RI_chrX_21878289_21882347,I_chrX_21882735_21882809,I_chrX_21882735_21883407,I_chrX_21882735_21883467,I_chrX_21882735_21883620,I_chrX_21882735_21883714 chrX - chrX_21882735_21882809;chrX_21882735_21883467;chrX_21882735_21883750 chrX_21882735_21883714 chrX_21882635_21882734;chrX_21883751_21883814 0.55 0.00 1.45 1.99 1.49 1.54 3.09 0.55 0.45 1.89 1.23 1.54 2.44 4.55 0.00 0.79 0.00 0.00 1.01 0.84 0.00 0.00 0.86 0.00 4.08 0.00 0.00 0.00 0.96 2.91 4.30 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 1.23 1.72 0.00 0.59 1.72 3.70 0.00 1.56 1.85 0.00 0.00 1.30 0.00 0.00 K intron_retention CG42271,RI_chrX_14127297_14127804 chrX - chrX_14126200_14126773 chrX_14126199_14126200;chrX_14126773_14126774 chrX_14125684_14126199;chrX_14126774_14127073 35.29 16.67 30.77 50.00 33.33 40.00 54.55 33.33 33.33 66.67 29.41 27.27 45.45 NA 37.50 NA 41.67 38.46 31.25 43.75 36.36 24.39 19.35 37.04 20.00 33.33 33.33 36.36 43.75 30.00 42.86 36.84 31.43 33.33 29.41 50.00 21.43 17.65 25.00 36.00 55.56 41.38 28.57 26.32 60.00 54.17 45.45 25.00 34.62 40.00 26.67 25.00 33.33 56.25 35.29 50.00 50.00 37.14 K intron_retention e(r) chrX - chrX_8799418_8800141 chrX_8799417_8799418;chrX_8800141_8800142 chrX_8798761_8799417;chrX_8800142_8800333 0.00 NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA K intron_retention CG14476,I_chrX_21474758_21476200,I_chrX_21475620_21475965 chrX - chrX_21475620_21476200 chrX_21475619_21475620;chrX_21476200_21476201 chrX_21475520_21475619;chrX_21476201_21476209 3.82 0.00 0.00 3.30 0.00 2.99 8.05 0.00 4.59 7.69 7.32 2.48 2.13 1.67 1.75 3.85 3.17 0.00 4.00 7.23 4.08 16.22 5.45 0.00 13.79 6.56 6.82 4.35 19.05 NA 1.54 NA NA 3.70 4.76 13.64 0.00 0.00 0.00 8.11 NA 3.82 2.13 6.25 NA 0.00 0.00 13.33 4.27 2.38 9.80 7.14 9.52 0.00 2.30 0.00 3.85 NA K intron_retention AP-47,I_chr3R_5385123_5385196 chr3R - chr3R_5385123_5385196 chr3R_5385122_5385123;chr3R_5385196_5385197 chr3R_5385023_5385122;chr3R_5385197_5385206 100.00 100.00 97.96 98.75 100.00 100.00 98.41 98.77 100.00 96.67 100.00 98.59 100.00 100.00 98.18 100.00 97.96 100.00 98.36 99.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 98.44 96.67 97.87 98.57 97.37 100.00 100.00 100.00 100.00 100.00 97.30 100.00 97.83 97.87 100.00 98.18 100.00 97.67 98.82 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 98.08 K alternative_donor Nedd4,I_chr3L_17526753_17527450,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17526749_17527450;chr3L_17526950_17527450 chr3L_17526753_17527450 chr3L_17527451_17527550;chr3L_17526708_17526748 24.44 24.00 27.78 10.71 29.41 51.06 27.69 32.26 19.72 35.71 18.18 37.36 7.41 31.43 34.04 20.63 35.00 26.19 20.00 22.12 20.69 37.50 20.97 38.89 29.17 22.50 32.43 22.22 38.89 38.24 37.50 28.57 50.94 23.44 29.41 29.55 17.39 18.18 24.44 20.00 36.84 31.18 22.58 16.13 35.00 18.18 13.64 18.18 24.18 14.29 19.57 17.65 33.33 27.78 32.00 23.81 13.33 21.43 K intron_retention Chro,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22871326_22871733 chr3L_22871325_22871326;chr3L_22871733_22871734 chr3L_22871251_22871325;chr3L_22871734_22871779 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Ubc-E2H,I_chrX_7984181_7984559,I_chrX_7984181_7984896,I_chrX_7984181_7987930,I_chrX_7984673_7985993 chrX - chrX_7984181_7985993 chrX_7984181_7985957 chrX_7984081_7984180;chrX_7985994_7986093 52.38 NA NA 68.18 NA NA NA 32.14 NA NA NA NA NA NA NA NA NA NA NA 52.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD lkb1 chr3R + chr3R_9502655_9502737 chr3R_9502667_9502737 chr3R_9502738_9503934;chr3R_9502444_9502654 86.24 88.10 78.05 83.72 NA 96.15 80.49 90.38 85.96 NA NA 87.50 NA NA 64.00 85.00 83.33 NA 96.15 86.21 80.00 87.50 85.48 89.19 81.48 81.82 81.25 72.41 82.00 84.62 73.33 86.49 83.75 92.31 89.47 86.84 83.33 87.88 88.64 86.27 84.44 86.79 80.77 82.35 83.87 86.11 91.43 93.75 92.59 92.86 87.04 100.00 90.48 NA 86.21 92.11 87.50 89.66 K alternative_donor Reg-5,I_chr2R_20676374_20676658,RI_chr2R_20676692_20676888 chr2R - chr2R_20676374_20676658 chr2R_20676374_20676501 chr2R_20676274_20676373;chr2R_20676659_20676691 98.61 98.77 100.00 98.61 97.83 98.25 100.00 100.00 100.00 97.56 97.62 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 97.45 100.00 93.10 99.01 95.74 98.31 100.00 100.00 97.96 96.77 98.18 98.33 100.00 98.36 98.84 96.49 95.16 98.43 97.56 99.16 98.91 98.00 99.19 97.30 98.67 97.87 96.63 98.36 96.83 99.02 97.59 98.88 98.00 98.68 98.84 98.36 98.82 99.00 98.33 K intron_retention CG14967 chr3L - chr3L_3217894_3217945 chr3L_3217893_3217894;chr3L_3217945_3217946 chr3L_3217618_3217893;chr3L_3217946_3218488 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.82 3.03 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention osa chr3R - chr3R_13522309_13523386 chr3R_13522308_13522309;chr3R_13523386_13523387 chr3R_13522092_13522308;chr3R_13523387_13523635 0.00 0.00 0.00 4.96 0.00 0.00 4.88 1.61 1.92 1.61 0.00 3.01 0.00 0.00 0.00 0.00 1.27 0.00 0.00 2.63 0.00 3.17 0.89 4.44 0.00 0.00 2.11 3.57 4.60 0.00 1.49 0.00 1.35 1.75 0.00 4.04 2.86 0.00 0.00 0.00 0.00 2.67 0.00 0.00 1.85 2.50 0.00 3.33 1.89 0.00 0.00 1.82 0.00 0.00 3.30 2.56 0.00 3.19 K jcn_only_AD Eps-15,I_chr2R_20660319_20660496 chr2R - chr2R_20660319_20660496 chr2R_20660319_20660463 chr2R_20660219_20660318;chr2R_20660497_20660521 98.17 97.35 97.54 98.19 98.47 95.10 99.00 98.35 98.33 99.07 99.23 96.79 96.00 99.03 100.00 99.01 96.61 99.14 96.30 97.63 98.10 93.68 99.49 95.70 99.01 98.86 98.08 98.18 97.26 96.95 97.39 100.00 99.36 96.84 97.14 94.51 98.57 99.40 99.03 91.75 98.61 96.02 95.40 99.26 95.50 99.24 98.32 100.00 99.41 98.63 99.41 98.17 97.06 97.25 95.42 96.30 97.95 96.25 K intron_retention CG4774,RI_chr3R_21512589_21512972 chr3R - chr3R_21512589_21512703 chr3R_21512588_21512589;chr3R_21512703_21512704 chr3R_21512489_21512588;chr3R_21512704_21512736 4.76 5.00 0.00 4.65 0.00 0.00 8.82 4.48 6.82 NA NA 5.41 0.00 8.33 7.69 3.90 0.00 8.00 11.11 3.57 7.41 NA 5.26 7.41 0.00 2.86 6.25 7.69 12.50 0.00 4.00 0.00 NA 7.27 6.45 0.00 11.76 12.90 0.00 5.56 0.00 3.57 0.00 12.50 4.00 6.00 4.76 3.85 5.26 0.00 5.66 11.76 9.09 0.00 2.56 5.71 0.00 0.00 K alternative_donor Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8462783_8463187 chr3L_8462792_8463187 chr3L_8463188_8463199;chr3L_8462665_8462782 50.00 NA NA 43.75 NA NA NA NA 55.56 NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA 50.00 NA 50.00 NA NA NA NA NA NA NA NA NA NA K jcn_only_AD InR,MIP08447,RI_chr3R_17441286_17441388 chr3R - chr3R_17429296_17444743 chr3R_17429296_17444448 chr3R_17428758_17429295;chr3R_17444744_17444758 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 98.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 97.67 100.00 95.24 NA 96.97 100.00 NA 100.00 100.00 NA 100.00 97.56 NA NA 100.00 NA 98.77 100.00 100.00 NA NA NA 100.00 100.00 NA 96.55 NA NA NA 100.00 NA NA NA K intron_retention CG7222 chr2R + chr2R_6701720_6701787 chr2R_6701719_6701720;chr2R_6701787_6701788 chr2R_6701632_6701719;chr2R_6701788_6702096 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 7.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Iap2,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11820226_11820288 chr2R_11820225_11820226;chr2R_11820288_11820289 chr2R_11819695_11820225;chr2R_11820289_11821303 0.40 0.64 0.00 3.31 0.00 0.00 0.00 0.00 0.41 1.96 0.00 0.72 0.00 0.00 0.57 0.00 0.00 0.74 0.00 1.39 0.00 2.14 1.98 0.00 1.65 1.30 2.55 3.14 16.94 0.40 0.61 0.77 0.29 0.50 0.00 1.86 0.38 0.00 1.45 0.96 1.99 0.00 0.00 0.00 0.50 0.29 0.00 2.04 0.00 1.03 0.00 0.00 0.00 0.49 0.00 1.33 0.00 0.51 K intron_retention Nup98 chr3R - chr3R_19602598_19602653 chr3R_19602597_19602598;chr3R_19602653_19602654 chr3R_19602367_19602597;chr3R_19602654_19602829 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG32549,I_chrX_18286136_18286367,I_chrX_18286289_18286367,RI_chrX_18301919_18303082 chrX - chrX_18286136_18286367;chrX_18286289_18286367 chrX_18286194_18286367 chrX_18286368_18286467;chrX_18286073_18286135 99.47 100.00 99.47 99.54 100.00 100.00 99.26 100.00 99.73 100.00 98.52 98.95 100.00 99.40 99.51 99.11 100.00 99.34 100.00 98.89 100.00 99.54 99.43 99.10 100.00 100.00 98.88 99.70 98.17 98.78 94.65 97.37 99.01 99.24 99.44 98.56 99.38 99.61 99.31 98.74 100.00 99.41 100.00 99.16 98.39 100.00 100.00 100.00 99.67 99.53 98.93 99.46 98.33 100.00 99.48 98.08 100.00 100.00 K intron_retention Spf45 chr2L - chr2L_22960834_22960931 chr2L_22960833_22960834;chr2L_22960931_22960932 chr2L_22959877_22960833;chr2L_22960932_22961115 68.57 70.97 76.67 64.44 78.95 62.50 83.64 59.18 75.76 77.78 80.00 80.43 67.74 70.00 75.00 62.71 69.57 77.78 79.41 68.57 86.67 68.18 50.00 57.89 74.07 86.21 60.00 75.00 71.43 46.67 44.07 69.23 52.63 78.95 62.50 95.24 75.00 73.68 66.67 64.52 65.00 67.31 72.00 57.58 47.37 65.00 55.56 47.83 60.94 71.79 69.77 65.38 55.56 66.67 70.00 65.52 69.57 38.46 K jcn_only_AD CG6859 chr3L + chr3L_15137636_15137768 chr3L_15137650_15137768 chr3L_15137769_15139146;chr3L_15137556_15137635 2.61 2.90 2.60 0.96 5.00 3.17 6.90 0.00 1.43 3.57 0.00 3.06 4.08 2.00 6.06 0.00 3.12 0.00 1.82 3.57 2.27 2.94 2.94 1.18 4.55 3.03 0.00 5.88 5.80 1.85 1.61 1.67 2.67 5.19 1.89 2.94 0.00 0.00 0.00 4.00 3.12 5.43 3.12 0.00 3.28 3.45 0.00 2.61 0.00 2.70 2.82 1.72 0.00 1.59 1.39 1.79 2.04 2.61 K intron_retention CG9674,E_chr3L_16781559_16783017,E_chr3L_16781631_16782145,I_chr3L_16785706_16785748,I_chr3L_16793055_16800660 chr3L - chr3L_16781644_16781761 chr3L_16781643_16781644;chr3L_16781761_16781762 chr3L_16780915_16781643;chr3L_16781762_16782420 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 1.01 0.00 1.54 1.07 0.00 0.00 0.88 1.00 0.00 0.00 0.00 1.21 0.00 2.74 0.54 0.00 0.00 0.00 0.82 2.86 0.91 0.00 0.00 0.00 0.56 0.62 0.00 0.00 0.29 0.00 0.30 0.00 0.00 0.88 0.00 0.00 0.00 1.63 0.50 0.00 1.01 0.33 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention tomosyn,I_chrX_12531219_12531470,I_chrX_12534873_12541731,noncoding_23357,I_chrX_12548772_12549203 chrX + chrX_12543216_12545142 chrX_12543215_12543216;chrX_12545142_12545143 chrX_12543036_12543215;chrX_12545143_12545259 95.53 100.00 NA 100.00 NA NA 92.86 NA 92.00 NA 81.82 NA NA NA 100.00 85.71 NA 100.00 94.74 95.83 90.91 100.00 90.91 NA NA 87.50 NA NA 100.00 90.91 87.50 NA 100.00 100.00 NA 100.00 100.00 NA 88.89 100.00 92.86 95.24 NA 100.00 90.00 100.00 92.86 100.00 96.43 100.00 90.91 NA NA NA 88.89 NA 100.00 95.24 K intron_retention CG8908,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16156042_16156098 chr2R_16156041_16156042;chr2R_16156098_16156099 chr2R_16155085_16156041;chr2R_16156099_16156327 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA 2.22 NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K multi_cassette Sh3beta,I_chr3L_7358062_7358169,RI_chr3L_7358065_7358169,I_chr3L_7361085_7361784 chr3L - chr3L_7358062_7360658 chr3L_7358062_7358169;chr3L_7359311_7359541;chr3L_7359617_7360658 chr3L_7358170_7359310;chr3L_7359542_7359616 chr3L_7357965_7358061;chr3L_7360659_7361084 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 50.00 100.00 66.67 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 66.67 80.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 K alternative_donor vari,I_chr2L_20792267_20794059 chr2L - chr2L_20790721_20791229 chr2L_20790721_20791166 chr2L_20790622_20790720;chr2L_20791230_20791664 100.00 100.00 100.00 98.63 100.00 100.00 98.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 99.05 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.13 100.00 99.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.21 98.90 98.25 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention l(1)G0196,I_chrX_21900456_21903880,RI_chrX_21900456_21904036,I_chrX_21900456_21904601,noncoding_25159,I_chrX_21903160_21903227 chrX + chrX_21900456_21904471 chrX_21900455_21900456;chrX_21904471_21904472 chrX_21900356_21900455;chrX_21904472_21904538 83.33 81.40 75.93 62.75 71.88 78.12 87.04 74.63 84.62 93.55 94.74 72.60 96.00 80.00 82.93 88.64 81.25 80.65 92.59 80.95 96.30 88.24 75.36 82.76 86.49 88.00 87.14 93.10 88.24 88.10 79.41 87.18 91.07 89.47 85.42 65.00 83.93 81.08 77.22 80.00 79.41 83.84 82.14 90.00 97.96 85.11 78.12 91.67 85.71 77.05 71.21 83.33 71.43 80.00 80.00 82.22 84.75 83.78 K intron_retention Vha44,I_chr2R_12213936_12213993,RI_chr2R_12213936_12213995,I_chr2R_12220926_12223455 chr2R - chr2R_12213936_12213997 chr2R_12213935_12213936;chr2R_12213997_12213998 chr2R_12213838_12213935;chr2R_12213998_12214093 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.75 0.00 0.00 0.00 K alternative_donor Adf1,CG15908_CG9410 chr2R + chr2R_2549942_2550129 chr2R_2549954_2550129 chr2R_2550130_2550262;chr2R_2549797_2549941 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA 90.91 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention CG2225 chr2L - chr2L_21666378_21668105 chr2L_21666377_21666378;chr2L_21668105_21668106 chr2L_21666063_21666377;chr2L_21668106_21668236 0.00 0.00 0.00 10.26 0.00 0.00 7.89 4.55 1.72 0.00 4.76 6.82 13.04 0.00 0.00 7.41 0.00 0.00 11.11 0.00 0.00 0.00 6.06 0.00 0.00 0.00 3.45 9.52 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.53 0.00 0.00 0.00 0.00 0.00 3.28 NA 0.00 0.00 NA 0.00 0.00 6.25 NA 0.00 K intron_retention I_chr2L_8140779_8156516,CG8498 chr2L - chr2L_8162064_8162122 chr2L_8162063_8162064;chr2L_8162122_8162123 chr2L_8161724_8162063;chr2L_8162123_8162237 3.33 3.51 0.00 6.25 6.90 2.22 0.00 1.54 5.71 5.71 0.00 5.26 0.00 0.00 0.00 3.64 0.00 0.00 5.41 3.85 5.41 6.25 3.28 2.63 3.85 4.65 5.26 10.42 15.56 6.45 6.38 0.00 0.00 1.96 3.03 10.71 5.17 0.00 3.77 4.11 9.09 1.67 0.00 0.00 0.00 3.61 3.85 5.66 4.11 0.00 3.33 0.00 2.90 5.41 0.00 2.70 2.16 3.30 K intron_retention Bet3,Nf-YA chr3L - chr3L_9432661_9435223 chr3L_9432660_9432661;chr3L_9435223_9435224 chr3L_9432250_9432660;chr3L_9435224_9435352 12.50 0.00 5.00 17.86 NA 0.00 14.29 13.51 14.29 25.00 NA 10.00 NA 0.00 12.50 33.33 0.00 21.05 NA 15.38 NA NA 20.00 17.65 NA 0.00 11.76 22.22 NA 0.00 19.05 NA NA 21.43 7.14 8.00 12.50 NA 12.50 17.86 14.29 5.71 NA 0.00 NA 26.67 16.00 NA 10.53 12.50 16.67 NA 8.70 16.67 0.00 9.09 12.50 4.76 K jcn_only_AD CG3961,E_chr3L_18871487_18875465,I_chr3L_18872561_18872646 chr3L - chr3L_18874352_18880160 chr3L_18874352_18875418 chr3L_18874178_18874351 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 3.70 NA 0.00 0.00 NA 5.00 NA NA NA NA 4.76 3.85 0.00 0.00 0.00 5.41 NA NA NA 0.00 NA NA 0.00 0.00 9.09 0.00 0.00 0.00 NA 0.00 NA 4.17 2.56 8.33 K alternative_acceptor E(bx),I_chr3L_240127_240176,I_chr3L_246324_246699 chr3L - chr3L_240114_240176;chr3L_240111_240176;chr3L_240117_240176 chr3L_240127_240176 chr3L_240177_240276;chr3L_240027_240110 18.95 16.07 17.02 19.09 22.22 19.15 12.36 16.39 17.93 14.29 23.08 16.31 19.40 22.86 19.35 21.78 14.52 17.11 18.68 17.12 15.71 18.95 19.09 18.57 25.00 25.97 23.17 22.22 19.05 20.41 20.00 22.41 23.70 17.69 22.67 17.98 17.39 20.45 15.79 13.38 22.86 19.72 18.52 15.94 20.55 13.92 14.00 14.80 20.62 19.57 15.15 16.67 17.02 18.60 21.90 16.07 21.57 19.57 K alternative_donor Moe,I_chrX_8774434_8791759 chrX - chrX_8768435_8768544 chrX_8768435_8768535 chrX_8768222_8768434;chrX_8768545_8768932 21.91 23.76 21.19 19.03 21.60 22.05 23.40 13.98 21.86 20.81 17.80 19.29 24.28 21.59 17.56 21.28 20.16 16.75 16.60 20.65 18.17 25.41 23.15 24.21 22.74 20.14 24.05 23.23 24.38 22.16 19.13 22.08 20.42 22.22 21.42 14.88 22.74 21.57 23.21 23.76 22.90 22.46 20.22 23.65 21.03 21.12 23.50 21.91 20.42 22.89 24.18 20.60 23.69 22.95 20.50 22.22 22.78 21.99 K intron_retention noncoding_9335 chr2R + chr2R_20682246_20682317 chr2R_20682245_20682246;chr2R_20682317_20682318 chr2R_20682214_20682245;chr2R_20682318_20682737 53.33 NA NA 76.47 NA NA NA 38.46 36.84 NA NA 50.00 NA NA NA 65.38 NA NA NA 50.00 NA 50.00 NA NA NA NA NA NA 66.67 NA NA 70.00 NA NA NA NA NA NA NA 53.33 NA 42.86 NA NA 71.43 72.73 NA 75.00 50.00 50.00 NA NA NA NA NA NA NA 92.59 K intron_retention Aats-met chr3R - chr3R_10078551_10084352 chr3R_10078550_10078551;chr3R_10084352_10084353 chr3R_10078353_10078550;chr3R_10084353_10084617 0.00 0.00 NA 0.00 NA 11.76 0.00 0.00 4.35 NA NA 6.90 NA NA 10.53 NA NA NA NA 5.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 2.56 7.41 0.00 0.00 0.00 7.14 5.56 2.27 3.03 3.12 NA 5.00 0.00 0.00 0.00 0.00 8.00 0.00 3.57 NA 0.00 0.00 11.76 0.00 0.00 3.45 K alternative_last_exon CG17124,I_chr2L_10753685_10755903,noncoding_2470 chr2L - chr2L_10746079_10755903 chr2L_10754015_10755903 chr2L_10745782_10746078 chr2L_10753677_10754014 chr2L_10755904_10756003 50.00 53.85 57.69 45.83 52.38 50.00 64.00 72.22 70.37 20.00 57.14 57.89 63.16 72.22 60.87 75.00 55.00 50.00 69.57 67.86 56.25 25.53 50.00 42.31 30.43 44.44 48.15 21.88 31.82 53.85 62.96 29.41 59.26 64.71 44.44 47.37 46.67 40.91 31.25 52.38 25.00 56.60 63.16 54.17 19.23 38.46 30.43 55.56 69.57 28.00 38.24 47.37 33.33 18.75 62.07 30.00 24.00 57.69 K alternative_donor CG17977,RI_chr2R_3954264_3954689,RI_chr2R_3954799_3955080 chr2R - chr2R_3954799_3954912;chr2R_3954799_3954847 chr2R_3954799_3954935 chr2R_3954775_3954798;chr2R_3954936_3954942 18.34 NA NA NA NA NA 16.67 16.67 37.50 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA 20.00 NA K intron_retention dmondo,I_chr2L_21301528_21308287,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579 chr2L - chr2L_21287328_21287390 chr2L_21287327_21287328;chr2L_21287390_21287391 chr2L_21287204_21287327;chr2L_21287391_21287723 0.00 0.00 0.00 2.48 0.00 0.00 0.00 0.00 0.65 0.00 0.00 2.82 1.19 0.00 0.00 2.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 1.20 0.00 2.05 2.70 0.00 0.00 0.00 0.00 0.00 0.00 2.90 2.99 0.00 0.00 0.69 1.30 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.59 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 K intron_retention Spindly,F_chr2L_3528916_3528977 chr2L - chr2L_3528916_3529055 chr2L_3528915_3528916;chr2L_3529055_3529056 chr2L_3528817_3528915;chr2L_3529056_3529077 19.05 12.90 15.38 28.12 19.05 13.04 31.58 12.00 21.43 NA 23.08 14.58 21.74 19.05 14.29 15.38 20.00 15.38 18.75 17.86 10.00 11.76 22.86 23.53 56.25 36.36 24.00 28.57 57.14 17.39 50.00 37.50 19.23 17.65 33.33 43.75 30.77 28.57 22.22 14.29 NA 25.71 17.65 16.67 16.67 21.05 14.81 34.62 15.38 10.71 14.81 11.54 26.09 5.88 17.39 22.22 19.35 14.29 K intron_retention CG8646 chr2R + chr2R_8545124_8545179 chr2R_8545123_8545124;chr2R_8545179_8545180 chr2R_8545113_8545123;chr2R_8545180_8545187 0.00 0.00 12.50 0.00 NA 0.00 5.56 0.00 2.00 NA 0.00 12.20 7.41 0.00 0.00 6.25 0.00 0.00 0.00 2.27 15.38 NA 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA NA 2.56 NA NA 0.00 NA 0.00 5.26 NA 7.50 5.26 NA NA 17.39 0.00 NA 0.00 14.29 0.00 NA NA 0.00 10.71 0.00 NA NA K intron_retention Updo chr2R + chr2R_5472307_5472432 chr2R_5472306_5472307;chr2R_5472432_5472433 chr2R_5472269_5472306;chr2R_5472433_5473176 0.00 0.00 0.00 2.27 0.00 0.00 3.53 0.00 1.15 0.00 2.56 1.65 0.00 0.00 1.37 2.90 0.00 0.00 0.00 2.22 0.00 0.00 1.15 1.61 0.00 1.39 6.90 7.41 10.14 0.00 1.15 3.64 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 7.69 0.00 0.00 0.00 0.00 1.12 0.00 0.00 1.77 0.00 0.00 0.00 0.00 1.96 1.41 0.00 0.00 0.00 N cassette puc,CG7878,I_chr3R_3952846_3953762 chr3R + chr3R_3931818_3936798 chr3R_3931818_3933953;chr3R_3934101_3936798 chr3R_3933954_3934100 chr3R_3931090_3931817;chr3R_3936799_3937023 100.00 100.00 100.00 83.08 100.00 100.00 94.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.54 100.00 100.00 94.71 100.00 100.00 100.00 95.61 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA ari-1,I_chrX_18026911_18026975 chrX - chrX_18031080_18031608 chrX_18031084_18031608 chrX_18031609_18031714;chrX_18030475_18031079 88.00 NA 81.82 72.41 NA NA 97.06 94.87 92.55 100.00 81.82 78.43 NA 82.76 86.21 90.48 92.31 95.45 90.62 90.74 100.00 85.29 100.00 NA 90.00 88.00 85.00 NA 85.71 88.00 89.29 NA 92.98 85.29 NA NA 84.62 NA 73.91 NA NA 82.93 NA 86.21 NA 100.00 NA 97.14 86.36 NA NA NA NA NA 75.00 NA NA 79.07 K alternative_acceptor RI_chrX_11473566_11473702,roX2,noncoding_23149,I_chrX_11475074_11475402 chrX + chrX_11473270_11473384 chrX_11473270_11473381 chrX_11473254_11473269;chrX_11473385_11473432 63.64 NA NA NA NA NA NA 70.00 61.54 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 63.64 NA NA NA NA NA NA NA 45.45 NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA K intron_retention CG4572,FI_chr3R_15689914_15690042 chr3R - chr3R_15689914_15689997 chr3R_15689913_15689914;chr3R_15689997_15689998 chr3R_15689814_15689913;chr3R_15689998_15690036 83.33 60.00 80.00 91.49 100.00 70.00 62.86 89.19 69.57 90.00 83.33 79.55 83.33 77.27 75.00 90.24 77.78 66.67 95.45 88.24 84.21 76.47 84.62 92.86 93.75 92.59 81.08 95.00 96.88 66.67 84.62 90.00 90.00 73.33 90.91 85.71 70.00 53.85 78.57 83.33 94.44 78.79 88.24 86.36 NA 75.00 76.19 92.86 72.73 75.00 85.00 63.64 80.00 80.00 84.62 82.35 75.00 87.50 K intron_retention stv chr3L + chr3L_13474236_13474313 chr3L_13474235_13474236;chr3L_13474313_13474314 chr3L_13474136_13474235;chr3L_13474314_13474377 63.40 63.64 NA NA NA NA NA NA 63.64 NA NA 69.23 NA NA NA NA NA NA NA 63.64 NA 71.43 63.16 53.33 75.00 NA 76.92 36.84 77.78 NA NA NA 53.85 50.00 50.00 50.00 52.94 90.00 47.06 55.56 NA 52.94 NA 72.22 38.46 64.29 71.43 81.82 56.25 52.94 91.67 NA 69.23 NA NA 58.33 NA NA K alternative_donor CG17549,R_chr2L_19388305_19388473,RI_chr2L_19388570_19389427,I_chr2L_19388570_19389922 chr2L - chr2L_19388570_19389427;chr2L_19388570_19389764;chr2L_19388570_19389926 chr2L_19388570_19389935 chr2L_19388474_19388569;chr2L_19389936_19390022 25.00 NA NA 33.33 NA NA 50.00 20.00 25.00 66.67 NA 0.00 33.33 NA NA 0.00 NA NA NA 20.00 NA 50.00 NA NA NA NA NA NA NA NA NA NA NA 57.14 NA NA NA NA NA NA NA 60.00 NA NA NA NA 25.00 0.00 0.00 NA NA NA NA NA NA NA 20.00 NA K alternative_donor CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907784_9908531;chr2L_9907784_9908307;chr2L_9907784_9908405 chr2L_9907784_9908424 chr2L_9907756_9907783;chr2L_9908532_9908619 72.73 79.25 70.45 73.96 65.38 71.88 68.57 72.37 64.00 72.73 72.00 72.04 56.41 70.45 72.73 71.60 68.18 70.00 71.43 76.43 73.33 72.44 76.77 75.38 79.63 79.55 65.28 70.37 76.39 72.62 73.33 85.29 79.71 70.65 69.70 79.61 67.61 72.09 73.77 74.23 75.00 72.53 63.41 67.95 73.68 76.32 74.63 77.78 73.49 70.45 76.54 79.49 76.92 78.26 72.58 72.00 77.59 80.30 K alternative_acceptor tra2,REFI_chr2R_10491644_10491701 chr2R - chr2R_10491629_10491701 chr2R_10491634_10491701 chr2R_10491702_10491801;chr2R_10491620_10491628 33.33 35.71 33.33 25.00 NA 26.32 34.38 29.63 34.21 NA 33.33 32.35 35.29 35.71 40.00 40.00 35.71 30.00 35.71 30.00 26.32 33.33 33.33 40.00 41.67 22.73 42.86 33.33 NA 35.71 17.24 31.58 35.71 NA 35.00 30.00 53.33 56.25 35.00 31.82 33.33 28.57 23.08 38.46 16.67 28.57 37.50 33.33 37.14 30.77 29.17 NA 28.57 23.08 25.00 28.00 46.15 25.00 K intron_retention CG1827 chr2R + chr2R_5476768_5476820 chr2R_5476767_5476768;chr2R_5476820_5476821 chr2R_5476621_5476767;chr2R_5476821_5477927 5.26 9.09 0.00 6.45 NA NA 0.00 5.26 15.38 NA NA 9.09 NA NA 5.56 5.56 NA 0.00 0.00 7.41 NA NA 13.64 0.00 0.00 0.00 8.33 NA NA NA 0.00 0.00 0.00 13.64 10.53 NA 10.00 0.00 13.04 10.00 NA 6.82 NA 13.04 5.26 11.76 0.00 NA 0.00 0.00 0.00 7.69 NA 6.25 NA 0.00 3.57 0.00 K cassette CG18769,I_chr3L_6544367_6555421 chr3L + chr3L_6545050_6583703 chr3L_6545050_6555421;chr3L_6555519_6583703 chr3L_6555422_6555518 chr3L_6545041_6545049;chr3L_6583704_6583935 96.30 100.00 100.00 100.00 100.00 100.00 80.00 100.00 95.65 85.00 92.86 100.00 100.00 100.00 93.75 95.00 100.00 100.00 94.12 96.97 100.00 95.24 100.00 93.10 73.33 93.33 89.66 93.33 91.30 96.88 100.00 93.75 95.83 95.65 96.00 85.71 93.33 100.00 91.89 97.96 94.12 100.00 100.00 100.00 96.30 96.97 96.30 100.00 100.00 92.31 100.00 100.00 96.15 94.74 95.24 100.00 92.86 97.06 K intron_retention CG17549,I_chr2L_19387937_19387993,I_chr2L_19388570_19389922 chr2L - chr2L_19387770_19388039 chr2L_19387769_19387770;chr2L_19388039_19388040 chr2L_19387538_19387769;chr2L_19388040_19388093 36.61 NA NA NA NA NA NA NA 47.62 53.85 NA 45.45 NA NA NA NA NA NA NA 42.31 87.50 53.85 25.00 NA 30.77 NA NA NA 15.79 27.27 30.77 35.29 25.00 NA 29.41 12.50 33.33 NA 42.86 42.86 35.71 38.46 NA 50.00 37.50 38.10 50.00 23.53 60.00 NA 66.67 NA 31.25 NA NA NA 28.57 8.33 K jcn_only_AD Nedd4,I_chr3L_17532828_17532882,I_chr3L_17532828_17533787,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17532828_17533790 chr3L_17532837_17533790 chr3L_17533791_17533887;chr3L_17532728_17532827 85.92 88.57 88.44 94.80 85.83 81.05 66.67 87.43 83.69 86.61 97.20 80.50 84.15 84.62 80.34 84.21 82.65 90.85 82.14 85.00 93.48 90.09 88.36 88.83 92.11 79.05 85.42 87.23 79.59 88.49 87.04 81.93 85.06 85.07 81.40 82.78 85.36 85.92 90.11 80.33 85.92 87.70 90.53 87.65 91.51 88.12 84.44 90.38 84.32 89.47 87.00 79.02 80.46 84.13 86.54 86.96 91.25 92.47 K intron_retention RI_chrX_2612780_2612845,ttm50,crm chrX - chrX_2624740_2624798 chrX_2624739_2624740;chrX_2624798_2624799 chrX_2624132_2624739;chrX_2624799_2624922 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 1.71 1.83 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 K intron_retention Mfap1,CG5690 chr3L + chr3L_1942238_1942299 chr3L_1942237_1942238;chr3L_1942299_1942300 chr3L_1941316_1942237;chr3L_1942300_1942891 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 K cassette Top1 chrX + chrX_15214800_15215186 chrX_15214800_15214943;chrX_15215066_15215186 chrX_15214944_15215065 chrX_15214731_15214799;chrX_15215187_15215404 90.00 NA 85.71 83.33 NA NA 100.00 88.89 91.67 100.00 NA 90.00 NA 75.00 66.67 100.00 NA 75.00 NA 77.78 NA 60.00 90.00 100.00 100.00 NA 100.00 83.33 90.00 100.00 83.33 NA 81.82 100.00 NA 66.67 100.00 87.50 100.00 90.00 NA 81.82 NA 100.00 NA NA NA 80.00 90.91 100.00 100.00 NA NA NA 85.71 NA NA 88.89 K jcn_only_AA Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654157,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15652351_15654272 chrX_15652363_15654272 chrX_15654273_15654284;chrX_15652263_15652350 20.00 NA NA NA NA NA NA 18.18 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor BtbVII,I_chr3L_3150858_3150927,I_chr3L_3151185_3151263 chr3L + chr3L_3149161_3149627;chr3L_3149157_3149627 chr3L_3149134_3149627 chr3L_3149628_3150153;chr3L_3149092_3149133 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention betaTub60D chr2R + chr2R_20198354_20198415 chr2R_20198353_20198354;chr2R_20198415_20198416 chr2R_20198245_20198353;chr2R_20198416_20198660 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.32 0.27 0.00 0.83 0.81 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 K alternative_last_exon CG12163,I_chr3R_1068862_1077145,RI_chr3R_1069977_1077139 chr3R - chr3R_1065342_1077145 chr3R_1069977_1077145 chr3R_1065214_1065341 chr3R_1068874_1069976 chr3R_1077146_1077239 2.49 1.80 2.42 0.60 2.65 2.38 2.49 1.25 2.24 6.71 1.55 5.80 4.58 1.75 2.08 1.26 1.70 1.02 0.98 2.21 2.09 1.33 3.07 3.21 2.76 1.59 3.02 2.85 2.11 2.10 2.18 3.03 2.80 1.94 4.03 9.00 3.01 2.61 3.97 4.94 4.40 1.68 1.94 1.83 3.19 3.91 3.24 2.80 2.48 3.11 2.28 2.56 3.01 4.08 1.40 4.64 2.40 2.90 K jcn_only_AA I_chr3L_20306985_20307177,CG6680 chr3L + chr3L_20310517_20311483 chr3L_20310517_20310578 chr3L_20310328_20310516 100.00 100.00 NA 100.00 NA 100.00 96.67 100.00 100.00 NA NA 98.44 100.00 100.00 96.55 100.00 NA NA 100.00 100.00 NA 100.00 100.00 95.00 NA NA NA NA NA 100.00 100.00 97.83 100.00 100.00 100.00 NA 100.00 100.00 NA 98.08 100.00 100.00 NA 96.88 100.00 100.00 97.62 100.00 100.00 100.00 98.31 96.55 100.00 NA 100.00 100.00 100.00 100.00 K intron_retention CG6701,RI_chr2R_9866896_9867532 chr2R - chr2R_9862709_9862773 chr2R_9862708_9862709;chr2R_9862773_9862774 chr2R_9862432_9862708;chr2R_9862774_9862879 0.48 0.80 1.36 2.56 0.00 0.00 2.11 1.47 1.41 2.00 0.00 0.39 0.00 1.50 0.53 2.51 0.48 0.00 0.00 0.88 0.00 0.73 1.11 1.57 1.94 2.70 4.17 5.56 0.00 0.00 1.08 0.00 0.00 1.53 2.67 3.85 0.00 0.00 1.83 0.76 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.49 0.00 1.17 0.00 K intron_retention CG11943 chrX + chrX_19747195_19747284 chrX_19747194_19747195;chrX_19747284_19747285 chrX_19747093_19747194;chrX_19747285_19747847 0.00 0.00 3.33 2.06 0.00 0.00 1.32 1.19 2.61 0.00 0.00 1.57 0.00 4.44 3.90 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.76 1.47 1.59 0.00 0.00 3.03 0.00 0.00 0.00 0.00 1.83 0.00 0.00 1.28 1.54 1.50 1.06 0.00 1.42 0.00 0.00 0.00 2.44 0.00 0.00 1.74 0.00 0.72 0.00 0.00 0.00 1.23 0.00 0.00 0.00 K intron_retention CG7185 chr3L - chr3L_8304327_8304746 chr3L_8304326_8304327;chr3L_8304746_8304747 chr3L_8304082_8304326;chr3L_8304747_8304806 0.00 0.56 4.17 1.03 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.48 0.00 0.00 2.00 0.00 0.00 0.00 0.00 1.06 0.00 0.75 0.00 1.09 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.34 0.49 0.00 0.00 0.00 0.71 0.00 0.00 0.46 0.00 0.60 0.58 0.00 0.71 0.00 0.00 5.26 0.00 0.00 0.00 K alternative_acceptor plexA,RI_chr4_1036247_1047588,RI_chr4_1040642_1047395,RF_chr4_1044307_1047399 chr4 - chr4_1035928_1036050 chr4_1035979_1036050 chr4_1036051_1036244;chr4_1035592_1035927 97.30 100.00 94.12 98.68 100.00 90.91 98.61 96.81 95.79 100.00 96.43 98.53 97.78 97.83 97.06 98.65 97.37 97.30 98.41 97.10 100.00 100.00 96.97 100.00 100.00 97.14 97.50 100.00 100.00 96.67 97.87 100.00 100.00 95.83 95.45 92.86 93.75 92.86 94.44 96.97 94.74 98.59 97.50 96.97 88.24 95.35 96.30 96.43 95.29 100.00 92.31 94.74 100.00 100.00 100.00 95.83 100.00 93.10 K intron_retention Aats-lys chrX - chrX_9502326_9502751 chrX_9502325_9502326;chrX_9502751_9502752 chrX_9501662_9502325;chrX_9502752_9502885 2.53 1.44 6.98 2.75 2.53 2.99 4.85 0.00 3.14 0.00 2.53 2.01 1.43 2.70 2.80 3.03 1.49 2.02 2.60 2.12 0.00 7.58 1.50 2.03 7.69 4.44 8.26 3.47 4.59 2.04 2.27 4.71 1.71 2.78 2.44 1.67 4.58 0.00 2.01 2.60 5.31 2.82 1.41 2.56 1.28 3.15 3.42 2.05 3.64 3.30 1.52 1.19 1.89 0.75 2.61 1.43 3.21 1.28 K intron_retention dyn-p25 chr2L + chr2L_15006261_15006317 chr2L_15006260_15006261;chr2L_15006317_15006318 chr2L_15005961_15006260;chr2L_15006318_15006539 0.00 0.00 0.00 1.67 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 K alternative_donor CG12428,I_chr3R_23531574_23532266 chr3R - chr3R_23531574_23532276;chr3R_23531574_23531981 chr3R_23531574_23531786 chr3R_23531474_23531573;chr3R_23532277_23532366 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K alternative_donor F_chrX_15764251_15765393,CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15764432_15765393;chrX_15764522_15765393;chrX_15764620_15765393;chrX_15764599_15765393 chrX_15764247_15765393 chrX_15765394_15765493;chrX_15764236_15764246 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 N alternative_donor CG9338,CG31675 chr2L + chr2L_20865586_20866935 chr2L_20866001_20866935 chr2L_20866936_20867640;chr2L_20865412_20865585 1.30 1.90 1.26 8.20 0.61 1.71 3.03 2.77 2.71 0.00 1.40 2.80 1.02 3.31 1.59 1.88 2.26 1.34 1.66 2.04 1.38 4.88 2.78 0.54 1.00 0.00 2.13 0.00 0.00 0.00 1.30 2.88 0.00 2.46 0.92 1.27 1.15 1.39 0.81 0.98 0.00 2.11 1.96 0.68 0.00 1.16 0.68 1.18 2.64 0.91 2.00 0.82 0.76 0.48 1.78 1.08 1.25 2.56 K intron_retention CG42271,RI_chrX_14127297_14127804 chrX - chrX_14125275_14125683 chrX_14125274_14125275;chrX_14125683_14125684 chrX_14124725_14125274;chrX_14125684_14126199 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 4.17 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_last_exon noncoding_20505,plexB chr4 - chr4_52160_56499 chr4_54000_56499 chr4_52068_52159 chr4_53817_53999 chr4_56500_56567 95.45 95.45 100.00 91.18 100.00 94.12 93.02 97.14 93.02 NA 100.00 95.35 100.00 96.00 94.44 93.44 91.67 92.86 96.30 94.55 100.00 NA 94.74 100.00 91.67 78.95 100.00 NA 87.50 100.00 87.50 100.00 88.89 91.11 100.00 100.00 100.00 NA 100.00 94.74 NA 97.44 100.00 100.00 83.33 95.45 94.12 100.00 93.02 100.00 93.75 100.00 90.00 100.00 92.86 100.00 94.12 95.45 K intron_retention pcm chrX - chrX_19385713_19385771 chrX_19385712_19385713;chrX_19385771_19385772 chrX_19384618_19385712;chrX_19385772_19386003 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 NA 8.33 NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA 9.38 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ND75 chrX - chrX_8145163_8145233 chrX_8145162_8145163;chrX_8145233_8145234 chrX_8144831_8145162;chrX_8145234_8145421 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention TfIIA-L chr3R + chr3R_23080451_23080737 chr3R_23080450_23080451;chr3R_23080737_23080738 chr3R_23080351_23080450;chr3R_23080738_23080746 3.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor Sap47,I_chr3R_11777573_11777784 chr3R + chr3R_11777564_11779879 chr3R_11777573_11779879 chr3R_11779880_11779956;chr3R_11777555_11777563 75.00 63.16 57.14 61.54 75.00 64.71 88.89 55.56 86.21 75.00 83.33 78.12 NA 66.67 64.71 NA 73.33 86.67 76.92 67.50 66.67 65.62 64.52 74.07 70.83 NA 88.89 100.00 65.79 75.00 82.35 66.67 67.57 85.71 77.78 62.50 81.08 57.69 58.62 65.85 73.33 75.00 NA 78.12 84.62 70.97 78.26 72.73 76.00 75.00 77.27 78.95 56.00 76.92 77.78 80.00 93.75 76.92 K alternative_donor CG17490 chr2L + chr2L_22431088_22432684;chr2L_22431020_22432684;chr2L_22431301_22432684 chr2L_22431120_22432684 chr2L_22432685_22433056;chr2L_22431014_22431019 7.69 4.76 7.41 7.14 15.00 4.35 14.89 10.42 8.77 10.00 4.76 8.51 12.00 18.52 12.90 11.11 12.00 12.00 12.90 6.12 4.35 8.70 5.88 5.26 9.09 6.25 11.76 10.00 6.67 0.00 3.92 8.33 0.00 3.70 7.14 10.00 6.67 0.00 6.67 5.41 14.29 12.24 11.11 6.25 8.33 8.70 4.76 5.56 8.47 13.64 7.69 5.00 21.05 14.29 5.26 5.88 4.00 0.00 K intron_retention Ubqn chrX + chrX_19579944_19580022 chrX_19579943_19579944;chrX_19580022_19580023 chrX_19578473_19579943;chrX_19580023_19581531 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 1.21 3.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.40 0.48 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.71 0.83 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG1646,I_chr3R_24640561_24640869,I_chr3R_24641816_24641874 chr3R + chr3R_24641449_24641521 chr3R_24641449_24641497 chr3R_24641204_24641448;chr3R_24641522_24641682 85.71 89.74 85.00 98.36 90.32 85.11 83.33 95.65 89.04 75.86 78.12 86.90 90.91 95.45 94.59 88.33 85.19 89.19 87.50 87.85 82.35 85.71 96.00 90.00 81.25 87.50 94.03 85.71 56.45 76.92 75.00 87.50 80.26 87.04 86.00 72.73 86.36 83.78 85.00 70.13 66.67 85.37 91.30 77.42 68.42 81.82 87.50 78.72 93.59 78.05 77.78 88.57 82.86 81.08 90.48 91.49 84.78 79.82 K intron_retention RI_chr3L_21188731_21188785,CG33054,CG33056 chr3L - chr3L_21193442_21193507 chr3L_21193441_21193442;chr3L_21193507_21193508 chr3L_21193095_21193441;chr3L_21193508_21193614 5.71 0.00 0.00 12.00 0.00 0.00 9.09 10.81 9.52 NA NA 7.41 NA 22.73 20.00 21.05 4.55 NA 0.00 5.71 7.69 NA 13.79 NA NA NA 5.56 11.76 NA 20.00 0.00 NA NA 10.34 NA NA 10.00 0.00 0.00 13.04 NA 0.00 NA 0.00 NA NA 0.00 NA 10.00 11.54 9.68 5.26 0.00 NA 0.00 0.00 0.00 NA K intron_retention I_chrX_19573364_19573474,CG14227 chrX - chrX_19582550_19582615 chrX_19582549_19582550;chrX_19582615_19582616 chrX_19582365_19582549;chrX_19582616_19582658 95.53 84.62 91.67 100.00 NA NA 100.00 95.24 96.30 NA NA 92.31 100.00 90.91 90.00 100.00 90.00 100.00 90.00 100.00 100.00 97.56 95.83 100.00 100.00 100.00 100.00 81.25 NA 100.00 86.67 100.00 100.00 94.12 100.00 91.67 92.86 100.00 92.86 100.00 88.89 94.44 92.31 85.71 100.00 91.67 100.00 92.86 93.33 93.33 100.00 87.50 NA 100.00 90.91 NA 100.00 91.67 K jcn_only_AD Mob2,RI_chr3L_11520443_11527440,CE_chr3L_11520917_11527526,RE_chr3L_11520925_11527489,RI_chr3L_11535932_11545929 chr3L - chr3L_11520917_11527489 chr3L_11520917_11527440 chr3L_11520825_11520916;chr3L_11527490_11527540 56.52 45.83 NA NA NA NA 48.72 54.55 52.94 NA NA 60.87 NA 65.00 NA 56.52 NA NA NA 38.10 NA 56.52 NA NA NA NA NA NA NA NA NA NA NA 75.00 61.90 NA NA NA NA 70.37 NA 48.28 NA 35.00 NA 73.53 NA NA 57.69 NA NA NA NA NA NA NA NA NA K intron_retention Atg18,I_chr3L_8182683_8182941 chr3L + chr3L_8180294_8180540 chr3L_8180293_8180294;chr3L_8180540_8180541 chr3L_8180118_8180293;chr3L_8180541_8180676 100.00 NA NA 100.00 NA NA 85.00 100.00 100.00 NA NA 100.00 NA NA NA NA 90.00 88.89 NA 100.00 NA 78.26 100.00 NA 100.00 91.67 NA NA NA NA 100.00 NA NA 100.00 NA 80.00 90.00 NA NA 81.82 NA 86.67 NA NA NA NA NA NA 88.89 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention CG32138 chr3L + chr3L_14062497_14063021 chr3L_14062496_14062497;chr3L_14063021_14063022 chr3L_14062186_14062496;chr3L_14063022_14063741 98.11 98.78 96.30 98.44 98.04 97.83 98.67 98.73 98.53 89.80 100.00 99.08 98.11 98.15 96.36 98.57 100.00 87.04 98.21 97.73 98.31 98.57 99.19 96.19 96.97 98.08 98.68 100.00 96.15 98.33 96.00 97.14 97.67 98.68 98.41 100.00 97.62 97.65 98.98 96.36 89.13 95.56 90.70 98.81 89.80 98.53 97.96 89.29 99.02 96.55 96.75 98.41 98.57 100.00 95.00 98.85 96.24 91.67 K intron_retention cact,I_chr2L_16313451_16314337,RI_chr2L_16314859_16315116,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16313451_16314450 chr2L_16313450_16313451;chr2L_16314450_16314451 chr2L_16313351_16313450;chr2L_16314451_16314708 9.78 5.92 10.78 23.66 5.36 13.51 10.53 10.98 8.45 11.36 15.66 9.76 7.00 7.41 13.83 16.56 6.60 12.79 6.84 15.89 9.30 4.62 9.55 9.66 10.53 14.13 10.88 19.74 13.08 5.50 13.33 6.49 11.61 12.58 6.52 22.22 7.22 6.25 6.67 8.11 11.61 8.70 7.04 6.15 10.00 9.63 9.25 17.19 11.23 6.93 8.77 9.78 9.78 12.39 10.28 9.73 9.57 12.35 K intron_retention tai,I_chr2L_9191814_9206231 chr2L + chr2L_9244587_9245385 chr2L_9244586_9244587;chr2L_9245385_9245386 chr2L_9244518_9244586;chr2L_9245386_9245712 6.56 NA NA 16.67 NA NA NA NA 7.14 4.35 NA NA NA NA NA NA NA NA NA NA NA 6.90 2.22 3.57 15.79 NA 0.00 14.29 7.41 14.29 NA 6.90 7.14 NA 0.00 2.70 6.82 8.33 6.45 13.64 6.67 9.52 NA 13.79 0.00 0.00 NA 3.92 NA 3.57 5.56 0.00 0.00 NA NA 8.70 0.00 0.00 K intron_retention Hr78,I_chr3L_21490089_21490390,CG33214 chr3L - chr3L_21488969_21489520 chr3L_21488968_21488969;chr3L_21489520_21489521 chr3L_21488699_21488968;chr3L_21489521_21489841 14.29 14.29 8.00 21.43 19.05 22.73 16.00 18.52 17.39 NA 13.33 21.62 33.33 17.65 10.71 15.38 16.67 0.00 17.65 20.51 27.27 NA 7.41 3.85 7.14 18.75 13.79 29.41 24.00 14.29 24.00 11.76 9.09 18.75 10.53 7.14 3.33 15.00 9.52 25.93 10.53 18.92 14.29 9.52 7.14 14.29 15.00 13.33 25.00 20.00 7.69 12.50 0.00 0.00 23.33 10.00 8.33 6.67 K alternative_donor iPLA2-VIA chr3L - chr3L_9856717_9856876;chr3L_9856717_9857292 chr3L_9856717_9857106 chr3L_9856421_9856716;chr3L_9857293_9857459 0.00 2.33 1.67 3.19 3.23 2.56 0.99 1.10 0.00 10.00 0.00 3.12 2.56 0.00 3.64 1.30 2.17 1.75 1.89 1.83 0.00 0.00 0.00 1.72 0.00 0.00 1.96 1.92 1.45 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 2.38 0.00 0.00 0.00 0.00 4.55 1.11 0.00 0.00 0.00 3.12 0.00 0.00 2.70 0.00 3.12 K jcn_only_AA Gp150,I_chr2R_18205316_18205386,RI_chr2R_18206133_18212679,I_chr2R_18211853_18212679,RI_chr2R_18212600_18212679,I_chr2R_18213233_18213308 chr2R + chr2R_18205243_18205338;chr2R_18205243_18205386 chr2R_18205243_18212679 chr2R_18205216_18205242 0.13 0.00 0.51 0.32 0.00 0.79 0.71 0.00 0.31 0.00 0.62 0.40 0.00 0.00 1.13 0.18 0.22 0.60 0.45 0.13 0.54 1.27 0.48 0.70 0.97 0.29 0.00 2.22 3.23 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.74 2.00 0.56 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.20 1.59 1.06 0.00 K intron_retention br,I_chrX_1517022_1518170 chrX + chrX_1517022_1518170 chrX_1517021_1517022;chrX_1518170_1518171 chrX_1516922_1517021;chrX_1518171_1518270 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 2.94 NA 0.00 0.00 0.00 0.00 0.00 6.67 NA NA 0.00 7.41 0.00 31.25 3.85 0.00 NA NA NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 3.70 NA NA NA 2.78 NA NA 0.00 K intron_retention CG8003,CG32068 chr3L + chr3L_10655724_10655783 chr3L_10655723_10655724;chr3L_10655783_10655784 chr3L_10654950_10655723;chr3L_10655784_10656256 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG11999,RI_chr3R_1180156_1180307 chr3R - chr3R_1180156_1180307 chr3R_1180156_1180282 chr3R_1180056_1180155;chr3R_1180308_1180407 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.51 100.00 100.00 99.13 99.64 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.78 99.15 99.08 99.41 100.00 99.22 100.00 100.00 100.00 100.00 99.22 98.73 100.00 100.00 100.00 100.00 100.00 99.36 99.28 100.00 99.46 100.00 99.29 100.00 100.00 99.54 99.45 99.48 100.00 100.00 99.45 99.40 98.84 99.50 99.31 99.40 99.40 99.36 100.00 K jcn_only_AD Snx6,RI_chr2L_8218680_8218853,I_chr2L_8230332_8238998 chr2L - chr2L_8218680_8219115 chr2L_8218680_8218853 chr2L_8218580_8218679;chr2L_8219116_8219215 0.33 0.31 0.00 0.29 0.48 0.45 0.00 0.60 0.37 0.00 0.00 0.61 0.94 0.00 0.40 0.00 0.45 0.90 0.00 0.90 0.49 0.49 0.00 0.52 0.48 0.42 0.25 0.00 0.49 0.45 0.00 1.02 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.33 0.40 0.82 0.50 0.00 1.07 0.32 0.27 0.00 0.24 0.59 0.22 0.00 0.34 0.00 1.01 0.27 0.36 0.81 K intron_retention CG33785 chr2R - chr2R_16531014_16531088 chr2R_16531013_16531014;chr2R_16531088_16531089 chr2R_16529965_16531013;chr2R_16531089_16531268 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 2.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 2.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 1.18 0.67 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 K intron_retention CG14803,CG14805 chrX + chrX_1763276_1763330 chrX_1763275_1763276;chrX_1763330_1763331 chrX_1762927_1763275;chrX_1763331_1763911 0.00 NA 0.00 0.00 4.55 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 2.56 NA 25.00 6.25 6.67 NA 0.00 22.22 NA NA 0.00 14.29 NA 0.00 7.41 NA 0.00 6.25 NA 0.00 2.70 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 K alternative_donor CG13163,RI_chr2R_8209160_8209216 chr2R + chr2R_8209156_8209216 chr2R_8209160_8209216 chr2R_8209217_8209316;chr2R_8209060_8209155 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 3.85 NA NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA 5.00 NA 5.88 0.00 NA 5.26 NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 0.00 0.00 K jcn_only_AA Plip chr3R + chr3R_19584641_19584711 chr3R_19584641_19584699 chr3R_19584572_19584640;chr3R_19584712_19584774 100.00 100.00 100.00 95.16 98.04 100.00 98.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.44 100.00 98.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_acceptor CG31431 chr3R + chr3R_17697863_17697938;chr3R_17697863_17698131 chr3R_17697863_17697989 chr3R_17697704_17697862;chr3R_17698132_17698247 2.57 3.09 1.46 1.85 2.04 1.82 27.78 2.74 2.01 5.56 2.99 2.57 7.20 3.42 3.21 2.18 2.26 3.01 3.45 2.23 2.29 3.54 2.21 1.45 9.90 4.24 2.41 4.82 3.03 0.83 2.07 3.60 2.36 2.14 3.77 2.63 1.80 2.38 0.75 3.66 22.94 2.33 3.01 1.95 3.57 2.67 2.00 4.65 7.07 3.12 1.82 4.82 2.33 1.90 2.31 2.41 1.66 2.86 K intron_retention CG17471,RI_chr4_1213397_1214333,RI_chr4_1213397_1216053,RI_chr4_1214248_1214333,I_chr4_1214293_1214333,RI_chr4_1215991_1216053,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1213397_1216053 chr4_1213396_1213397;chr4_1216053_1216054 chr4_1213332_1213396;chr4_1216054_1216153 29.41 NA NA 29.41 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD chic,RI_chr2L_5976783_5980950,I_chr2L_5979705_5979818,I_chr2L_5979705_5979941,RI_chr2L_5979705_5979951,I_chr2L_5979705_5979953,I_chr2L_5979705_5980025,I_chr2L_5979705_5980213,I_chr2L_5979705_5980370,I_chr2L_5979705_5980558,I_chr2L_5979705_5980632,I_chr2L_5979705_5980639,RI_chr2L_5979705_5980734 chr2L - chr2L_5979705_5980952;chr2L_5979705_5980950 chr2L_5979705_5980846 chr2L_5979605_5979704;chr2L_5980953_5981025 5.31 7.69 2.79 3.48 3.86 2.74 9.97 2.18 4.04 12.16 5.88 4.12 4.29 5.31 6.06 5.49 4.59 12.34 3.40 3.24 7.55 2.86 14.74 13.23 14.42 4.31 26.19 11.11 11.66 2.28 3.76 3.13 1.33 2.30 6.11 12.01 11.58 15.65 9.35 3.88 4.94 2.70 3.06 4.17 1.30 7.61 16.67 1.58 2.62 16.13 19.01 9.32 12.02 30.39 1.10 17.46 14.62 2.10 K intron_retention CG42238,I_chr2L_20967747_20967858,I_chr2L_20967747_20968017,I_chr2L_20967747_20968635,I_chr2L_20967747_20968842,I_chr2L_20967747_20969164,I_chr2L_20967747_20993232,I_chr2L_20967747_21051685,RI_chr2L_20967747_21051705,noncoding_4091,I_chr2L_20969524_21051773,I_chr2L_20993378_21028634,I_chr2L_21011481_21028636,RI_chr2L_21028682_21051773 chr2L - chr2L_20967747_20968842 chr2L_20967746_20967747;chr2L_20968842_20968843 chr2L_20967726_20967746;chr2L_20968843_20968871 80.00 NA NA NA NA NA NA NA 88.89 NA NA 69.23 NA NA NA NA NA NA NA 75.00 NA 80.00 80.00 NA NA NA NA NA 81.82 NA NA NA 76.19 NA NA NA NA NA NA 70.59 NA 88.89 NA NA NA NA NA NA 91.67 NA NA NA NA NA NA NA NA NA K intron_retention pod1 chrX + chrX_6705286_6705349 chrX_6705285_6705286;chrX_6705349_6705350 chrX_6705150_6705285;chrX_6705350_6705450 0.00 1.25 0.00 0.85 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.75 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 1.54 0.00 K intron_retention muskelin chr2R - chr2R_8518491_8518546 chr2R_8518490_8518491;chr2R_8518546_8518547 chr2R_8518349_8518490;chr2R_8518547_8518654 0.00 NA NA NA NA NA 0.00 NA 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA K jcn_only_AD CG7337,I_chr2L_1910010_1910066,RI_chr2L_1911951_1913208,RI_chr2L_1912284_1913208,I_chr2L_1938620_1938887,I_chr2L_1942183_1942233 chr2L + chr2L_1912284_1913208;chr2L_1911870_1913208;chr2L_1911951_1913208 chr2L_1912235_1913208 chr2L_1913209_1913308;chr2L_1911851_1911869 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_donor trbd chr3R - chr3R_5535271_5535611;chr3R_5535271_5536695 chr3R_5535271_5536202 chr3R_5535110_5535270;chr3R_5536696_5536730 77.27 78.26 62.96 63.16 81.25 70.83 75.76 71.79 75.86 76.92 55.56 69.05 75.00 83.33 82.61 76.47 77.78 42.31 76.92 79.59 71.43 33.33 79.41 78.26 77.78 81.82 80.77 72.73 59.26 65.22 78.26 73.33 71.05 75.68 78.95 85.71 77.27 70.00 78.26 74.29 78.26 71.11 77.78 86.36 81.25 79.17 73.68 68.75 76.32 80.00 79.31 82.61 83.33 83.33 76.92 84.62 77.78 85.71 K jcn_only_AD CG9836,I_chr3R_4654041_4664113,I_chr3R_4749124_4756437 chr3R - chr3R_4648792_4648989;chr3R_4648792_4648982 chr3R_4648792_4648970 chr3R_4648564_4648791;chr3R_4648990_4649023 0.36 1.12 0.57 0.34 1.19 0.71 0.43 0.62 0.00 0.89 0.88 0.36 1.37 0.00 0.00 0.00 0.00 2.10 1.04 0.49 0.00 1.33 0.35 0.41 0.00 0.00 0.48 1.82 0.91 0.00 0.64 1.62 0.00 0.00 0.78 0.00 0.52 0.00 0.00 1.60 0.41 0.65 0.72 0.51 0.00 0.00 0.57 0.00 0.32 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31211 chr3R + chr3R_7777961_7778368 chr3R_7777960_7777961;chr3R_7778368_7778369 chr3R_7777954_7777960;chr3R_7778369_7778390 100.00 100.00 100.00 90.00 100.00 NA 100.00 100.00 94.44 NA NA 100.00 100.00 87.50 NA 100.00 100.00 87.50 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 NA 90.00 100.00 NA 100.00 NA 94.74 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 92.31 100.00 88.89 K alternative_acceptor tud,I_chr2R_17086183_17086333 chr2R + chr2R_17074553_17074616 chr2R_17074553_17074607 chr2R_17073474_17074552;chr2R_17074617_17075437 96.36 93.48 94.81 96.46 97.96 97.96 99.02 98.96 95.09 95.45 97.87 97.60 98.44 93.94 94.67 98.75 98.00 95.24 92.96 95.28 97.30 98.08 95.60 97.22 92.11 97.10 97.92 96.15 97.62 95.35 98.36 100.00 100.00 98.98 93.75 85.48 96.88 96.15 95.00 96.25 95.24 96.36 94.34 93.22 92.86 96.77 100.00 98.41 98.00 94.44 94.55 100.00 95.00 100.00 95.29 100.00 94.12 96.00 K intron_retention CG10353,I_chrX_11773365_11773426,I_chrX_11775936_11778830,I_chrX_11778617_11778830,RI_chrX_11780885_11780988 chrX - chrX_11773365_11773430 chrX_11773364_11773365;chrX_11773430_11773431 chrX_11773265_11773364;chrX_11773431_11773524 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 3.45 4.26 1.69 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.98 1.00 0.00 1.30 0.00 1.61 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 2.68 K intron_retention Tim10,CG42497,I_chr2R_17578506_17578580,I_chr2R_17578506_17578584 chr2R - chr2R_17578506_17578576 chr2R_17578505_17578506;chr2R_17578576_17578577 chr2R_17578437_17578505;chr2R_17578577_17578627 1.24 2.35 0.49 1.93 0.00 1.92 1.01 1.95 1.41 0.67 0.00 1.00 0.70 1.57 1.24 0.60 1.98 0.00 1.68 1.15 1.52 0.00 2.07 0.70 1.36 1.56 3.95 9.33 4.76 2.61 1.05 1.09 0.00 1.08 2.94 0.00 0.91 5.41 1.19 0.63 0.00 1.43 2.06 1.23 0.39 1.60 2.06 0.00 2.17 2.07 1.23 4.04 0.90 0.93 1.80 2.65 1.41 0.55 K intron_retention RI_chr4_980473_983026,noncoding_20846,R_chr4_980665_983026,R_chr4_980665_983029,R_chr4_980750_982876,R_chr4_980750_983026 chr4 + chr4_982974_983029 chr4_982973_982974;chr4_983029_983030 chr4_982970_982973;chr4_983030_983080 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 97.50 100.00 100.00 100.00 98.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette lqf,I_chr3L_7522287_7522807 chr3L + chr3L_7528745_7530075 chr3L_7528745_7529810;chr3L_7529870_7530075 chr3L_7529811_7529869 chr3L_7528643_7528744;chr3L_7530076_7530479 12.50 10.00 13.04 9.24 10.00 8.62 8.33 12.63 10.74 28.21 5.26 11.61 15.69 10.91 14.49 15.07 18.87 18.97 11.48 23.70 11.11 14.89 15.45 16.13 20.41 7.69 13.54 2.82 2.86 10.81 30.67 12.50 11.76 12.36 17.02 12.28 12.90 6.76 16.33 1.40 13.33 11.59 13.73 12.50 9.23 18.75 14.29 9.38 10.74 10.13 15.46 11.67 13.16 15.22 13.19 14.06 8.33 12.50 K alternative_donor CG15365,I_chrX_8950375_8950458 chrX - chrX_8950375_8950479 chrX_8950375_8950458 chrX_8950275_8950374;chrX_8950480_8950558 15.79 NA NA NA NA NA NA 28.57 15.79 NA NA 14.29 NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA 14.29 30.00 NA NA NA NA NA NA NA NA NA K alternative_donor CG9121,I_chr2L_5050018_5050128,I_chr2L_5050018_5050955,I_chr2L_5050249_5050657,Rpn11 chr2L - chr2L_5050018_5050955 chr2L_5050018_5050657 chr2L_5049918_5050017;chr2L_5050956_5050976 91.67 NA NA NA NA NA NA NA 75.00 83.33 NA NA NA NA NA 85.71 NA NA NA 83.33 NA 91.67 90.91 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA 83.33 100.00 75.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA K intron_retention CG15814,I_chrX_17743744_17743940 chrX - chrX_17744102_17744245 chrX_17744101_17744102;chrX_17744245_17744246 chrX_17743941_17744101;chrX_17744246_17744313 43.86 44.07 45.65 53.70 58.33 44.44 59.46 56.90 55.88 38.46 54.55 43.84 46.67 38.46 48.78 38.75 57.50 56.41 56.86 46.23 48.72 36.92 38.03 43.86 41.67 55.56 50.00 50.00 64.71 39.47 49.25 35.14 37.50 51.61 22.73 41.46 39.62 43.10 37.10 40.35 36.84 58.82 55.26 28.33 40.54 34.55 44.19 47.06 42.35 31.71 34.00 46.34 27.91 35.14 59.57 38.46 41.67 39.13 N intron_retention CG3635 chr2L + chr2L_22182055_22182737 chr2L_22182054_22182055;chr2L_22182737_22182738 chr2L_22181845_22182054;chr2L_22182738_22183329 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 72.60 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 86.36 100.00 100.00 100.00 73.91 85.48 100.00 100.00 79.66 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.16 K alternative_acceptor CG8121,RI_chr3R_5183458_5183705 chr3R + chr3R_5161975_5162204 chr3R_5161975_5162041 chr3R_5161880_5161974;chr3R_5162205_5162441 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Spn,I_chr3L_2511764_2512148 chr3L - chr3L_2510558_2511162 chr3L_2510576_2511162 chr3L_2511163_2511763;chr3L_2509762_2510557 100.00 100.00 NA 90.00 NA NA NA 90.91 95.24 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 94.12 100.00 100.00 NA 100.00 NA 87.50 NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 94.44 NA 100.00 NA 100.00 100.00 87.50 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 K intron_retention pr-set7 chr3R + chr3R_10141926_10142198 chr3R_10141925_10141926;chr3R_10142198_10142199 chr3R_10141765_10141925;chr3R_10142199_10142589 0.00 0.00 5.88 10.71 NA 0.00 14.29 0.00 0.00 NA NA 7.32 0.00 6.25 NA 6.90 NA 14.29 NA 6.45 NA NA 0.00 NA NA 10.53 NA NA NA NA 9.09 NA NA 0.00 0.00 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA 12.50 2.94 NA 0.00 NA NA NA 0.00 NA NA NA K intron_retention CG8412,I_chr3R_5583152_5583200 chr3R + chr3R_5582920_5582977 chr3R_5582919_5582920;chr3R_5582977_5582978 chr3R_5582787_5582919;chr3R_5582978_5583151 0.00 NA NA 0.00 NA NA 4.76 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 5.88 NA 15.00 10.71 0.00 NA NA 0.00 13.04 13.33 NA NA NA NA NA NA 21.43 0.00 0.00 0.00 2.50 NA 0.00 NA 0.00 NA NA 0.00 NA 10.53 0.00 4.76 NA NA NA 0.00 NA NA NA K multi_cassette CG15611,I_chr2R_12996782_13000822 chr2R + chr2R_12996782_13000822 chr2R_12996782_12997447;chr2R_12997580_12997671;chr2R_12998006_13000822 chr2R_12997448_12997579;chr2R_12997672_12998005 chr2R_12996682_12996781;chr2R_13000823_13000909 96.77 100.00 95.83 90.00 93.75 100.00 100.00 95.24 97.44 100.00 93.33 96.30 100.00 100.00 100.00 100.00 100.00 87.50 100.00 97.73 90.91 83.33 100.00 93.33 91.67 94.44 100.00 100.00 100.00 91.67 86.36 90.00 92.31 100.00 100.00 87.50 94.12 100.00 100.00 100.00 92.31 96.77 100.00 100.00 90.00 94.74 93.33 83.33 100.00 100.00 94.44 91.67 88.89 100.00 96.15 92.86 100.00 100.00 K jcn_only_AA Kmn1,I_chrX_11466174_11466223 chrX - chrX_11466166_11466223 chrX_11466174_11466223 chrX_11466224_11466323;chrX_11466074_11466165 0.73 0.00 2.88 1.87 0.98 1.28 1.01 0.00 1.24 0.00 0.00 0.00 2.86 1.49 1.16 1.41 0.00 0.00 0.00 1.16 1.14 0.00 2.44 0.00 0.00 0.00 0.82 2.13 2.86 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.73 0.00 0.57 1.49 1.43 1.08 1.65 0.91 0.00 0.65 1.10 1.05 1.00 0.00 0.88 1.09 0.00 0.00 1.19 K jcn_only_AD CG1407,RI_chr2R_5918919_5919093,I_chr2R_5918925_5919213,RI_chr2R_5918952_5919084,RI_chr2R_5918952_5919093 chr2R - chr2R_5918925_5919093 chr2R_5918925_5919084 chr2R_5918852_5918924;chr2R_5919094_5919184 30.54 21.21 32.08 20.19 39.13 40.91 31.11 27.85 24.24 NA 33.33 17.02 NA 23.33 20.00 32.73 50.00 22.92 37.21 40.22 31.25 31.82 32.43 20.00 50.00 38.46 41.51 NA NA NA 32.00 NA NA 33.33 NA NA 26.47 18.75 30.00 14.29 NA 29.17 33.33 8.82 NA 17.50 19.44 NA 31.08 12.12 29.27 25.93 33.33 16.67 37.50 14.29 34.38 NA K intron_retention Mi-2,Su(Tpl) chr3L - chr3L_19890514_19902346 chr3L_19890513_19890514;chr3L_19902346_19902347 chr3L_19890418_19890513;chr3L_19902347_19902410 19.05 33.33 14.29 19.05 25.00 NA 22.22 31.03 14.00 NA NA 13.04 19.05 15.79 21.43 16.67 13.64 NA 16.67 4.35 NA 50.00 10.53 33.33 NA NA 5.00 16.67 NA NA 28.57 NA NA 19.23 NA NA 6.67 NA NA 25.00 NA 14.29 NA 19.05 NA NA NA NA 25.00 NA 22.22 NA NA NA 14.29 NA NA NA K intron_retention CG41378,I_chr2RHet_1545717_1605870,I_chr2RHet_1545717_1621473,I_chr2RHet_1545717_1621569,RI_chr2RHet_1606049_1621284 chr2RHet - chr2RHet_1605787_1605870 chr2RHet_1605786_1605787;chr2RHet_1605870_1605871 chr2RHet_1605713_1605786;chr2RHet_1605871_1605970 97.30 98.31 93.65 95.65 97.73 96.88 96.04 99.25 97.30 96.00 100.00 97.92 93.22 96.83 98.67 96.15 98.44 98.11 93.59 96.97 100.00 97.30 100.00 98.36 97.92 98.75 98.21 95.24 98.21 95.45 97.59 90.70 92.86 94.92 97.30 100.00 97.83 96.00 98.48 98.98 98.11 97.87 98.11 98.53 97.83 95.83 97.01 96.83 97.01 98.21 94.59 92.86 95.92 93.44 98.80 95.77 95.92 96.43 N cassette RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817,snoRNA:Psi28S-2444 chr2R + chr2R_15330604_15330817 chr2R_15330604_15330664;chr2R_15330745_15330817 chr2R_15330665_15330744 chr2R_15330318_15330603;chr2R_15330818_15330917 0.19 0.15 0.09 0.06 0.19 0.20 0.43 0.24 0.21 0.25 0.13 0.21 0.16 0.13 0.15 0.13 0.16 0.10 0.15 0.18 0.14 0.74 0.12 0.19 0.17 0.18 0.22 0.20 0.87 0.23 0.93 0.25 0.15 0.19 0.23 0.18 0.33 0.21 0.20 0.37 0.12 0.20 0.17 0.37 0.21 0.24 0.24 0.20 0.42 0.24 0.26 0.17 0.19 0.18 0.14 0.24 0.16 0.14 K intron_retention CG34348 chrX + chrX_11234531_11234639 chrX_11234530_11234531;chrX_11234639_11234640 chrX_11234462_11234530;chrX_11234640_11234778 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 4.76 NA NA NA 0.00 NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 9.52 0.00 0.00 NA NA NA NA 6.12 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 K cassette Hydr2,RI_chr2L_3164075_3164159 chr2L + chr2L_3164075_3166969 chr2L_3164075_3166527;chr2L_3166652_3166969 chr2L_3166528_3166651 chr2L_3163975_3164074;chr2L_3166970_3167139 0.42 0.29 0.28 0.00 0.00 0.32 0.39 0.00 0.40 0.00 0.39 0.57 0.00 0.45 0.00 0.33 0.00 0.39 0.42 0.58 0.78 1.36 0.67 0.72 0.80 0.69 0.72 0.79 0.65 0.56 2.75 0.44 0.22 0.41 0.71 0.00 0.34 0.27 0.37 1.16 0.00 0.39 0.88 0.58 0.74 0.57 0.60 0.29 0.33 0.76 0.72 0.52 0.00 0.54 0.51 0.70 0.29 0.00 K mutually_exclusive par-1,EFI_chr2R_15361473_15362032,RI_chr2R_15361473_15362035,I_chr2R_15361473_15366246,I_chr2R_15362147_15365120,F_chr2R_15362147_15365138,I_chr2R_15362147_15365165,RI_chr2R_15363358_15365120,I_chr2R_15363358_15366246,I_chr2R_15365210_15370456 chr2R + chr2R_15361473_15366256,chr2R_15366371_15370456 chr2R_15361473_15365120,chr2R_15365210_15370456 chr2R_15366257_15366370 chr2R_15365121_15365209 chr2R_15361373_15361472;chr2R_15370457_15370556 3.23 4.55 2.94 0.00 3.45 0.00 3.45 0.00 1.19 0.00 0.00 2.27 7.14 0.00 3.45 0.00 0.00 0.00 4.76 1.64 4.00 11.36 2.56 2.63 5.26 3.23 4.00 4.55 15.38 3.57 4.00 0.00 6.67 2.17 5.56 4.55 2.70 4.17 2.70 3.70 11.11 2.04 0.00 4.17 5.56 4.76 3.57 12.50 1.79 3.23 2.94 0.00 5.56 6.67 2.70 5.26 2.86 0.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814894;chr2R_2815657_2816013;chr2R_2816342_2817327;chr2R_2817604_2817753 chr2R_2814895_2815656;chr2R_2816014_2816341;chr2R_2817328_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention MB6.chr3L.pasa.7892 chr3L - chr3L_19435494_19439134 chr3L_19435493_19435494;chr3L_19439134_19439135 chr3L_19435039_19435493;chr3L_19439135_19439461 0.98 0.00 NA 0.00 NA NA NA 8.33 7.89 13.33 NA 5.26 NA 0.00 NA 0.00 NA NA NA 3.85 NA NA 10.00 6.90 0.00 NA 8.33 NA 2.94 NA 0.00 0.00 16.67 4.55 0.00 11.11 17.39 0.00 6.25 2.78 0.00 14.29 NA 5.56 0.00 0.00 0.00 13.33 8.33 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.96 K alternative_donor CG16758,I_chr3L_2501142_2502594,I_chr3L_2502724_2503142 chr3L - chr3L_2500463_2502594 chr3L_2500463_2502390 chr3L_2499691_2500462;chr3L_2502595_2502694 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG12182,I_chr3L_2629527_2629921 chr3L - chr3L_2597143_2597193 chr3L_2597142_2597143;chr3L_2597193_2597194 chr3L_2596958_2597142;chr3L_2597194_2599061 0.00 NA NA 16.67 NA NA 0.00 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA 11.76 NA NA NA NA NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA K jcn_only_AD sqh,I_chrX_6118043_6119039,I_chrX_6118150_6118725,I_chrX_6118150_6118729,I_chrX_6118150_6118790,I_chrX_6118150_6118800 chrX - chrX_6118150_6118729;chrX_6118150_6119035;chrX_6118150_6118725;chrX_6118150_6118949 chrX_6118150_6119039 chrX_6118050_6118149;chrX_6119040_6119139 98.69 98.51 98.61 99.43 98.75 98.79 99.01 99.09 98.79 99.17 99.38 99.00 98.71 98.89 83.66 98.91 98.58 99.30 99.10 99.05 98.23 98.86 98.02 98.69 99.79 98.55 98.61 98.40 97.01 98.76 98.66 97.85 97.37 98.75 98.15 99.45 98.47 98.30 99.15 98.45 98.39 98.53 98.17 98.59 98.22 98.93 99.12 97.39 98.37 98.72 98.79 98.86 98.43 98.70 98.20 99.19 97.67 98.25 K intron_retention CG1607 chr3R + chr3R_27215037_27215102 chr3R_27215036_27215037;chr3R_27215102_27215103 chr3R_27214891_27215036;chr3R_27215103_27215317 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention IP3K1,CG4036 chr2L + chr2L_9786803_9787149 chr2L_9786802_9786803;chr2L_9787149_9787150 chr2L_9786686_9786802;chr2L_9787150_9787259 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 3.51 0.00 NA 0.00 0.00 0.00 3.45 2.56 NA 0.00 0.00 0.00 0.00 1.41 2.50 0.00 4.76 0.00 0.00 2.70 1.92 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 3.85 3.33 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 2.27 0.00 K alternative_acceptor tan,R_chr3L_6048520_6048578,R_chr3L_6048608_6048676 chr3L + chr3L_6048764_6048859 chr3L_6048764_6048816 chr3L_6048696_6048763;chr3L_6048860_6048925 96.55 84.62 93.75 96.55 91.67 100.00 96.15 96.15 100.00 88.89 100.00 95.83 100.00 91.67 95.24 96.15 100.00 100.00 100.00 95.24 93.33 100.00 96.00 100.00 94.44 92.31 100.00 100.00 100.00 100.00 94.12 87.50 92.31 96.55 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 87.50 100.00 100.00 93.10 100.00 96.43 92.86 100.00 100.00 85.71 92.31 93.75 85.71 K intron_retention CG4119 chrX + chrX_5560355_5560409 chrX_5560354_5560355;chrX_5560409_5560410 chrX_5560108_5560354;chrX_5560410_5560501 94.44 89.47 93.75 100.00 100.00 93.75 100.00 100.00 94.74 100.00 94.12 96.67 100.00 100.00 100.00 100.00 92.86 84.21 93.33 96.00 87.50 92.31 97.73 86.36 91.30 95.83 96.15 95.00 94.74 96.55 76.47 92.31 91.67 100.00 88.89 100.00 90.24 95.65 86.96 93.10 100.00 96.97 100.00 86.67 94.44 95.45 94.74 90.00 100.00 85.00 90.00 83.33 92.86 92.86 90.91 94.74 92.31 85.71 K cassette Actn,I_chrX_1929229_1936079,I_chrX_1929235_1930613 chrX - chrX_1924893_1936079 chrX_1924893_1928987;chrX_1929235_1936079 chrX_1928988_1929234 chrX_1924793_1924892;chrX_1936080_1936110 99.20 100.00 98.00 100.00 100.00 100.00 100.00 100.00 100.00 98.55 100.00 98.67 100.00 100.00 97.92 100.00 100.00 100.00 100.00 99.04 96.77 97.06 100.00 100.00 97.83 100.00 97.37 100.00 95.28 98.80 100.00 98.28 98.04 98.51 98.39 100.00 99.12 98.59 99.02 99.20 98.31 98.90 100.00 99.12 100.00 98.95 100.00 99.40 98.75 98.44 98.82 97.67 98.36 100.00 100.00 100.00 98.18 100.00 K alternative_acceptor Pfrx,I_chrX_19390217_19400515,RI_chrX_19390217_19403850,RI_chrX_19392914_19400518,RI_chrX_19399882_19400518,I_chrX_19400112_19400515,RI_chrX_19400112_19400518,I_chrX_19400271_19400518 chrX + chrX_19400271_19400515;chrX_19400271_19400518 chrX_19400271_19400325 chrX_19400171_19400270;chrX_19400519_19400615 40.00 40.00 40.00 NA NA NA 50.00 66.67 NA 40.00 NA 60.00 NA 40.00 25.00 50.00 60.00 50.00 50.00 35.29 NA NA 25.00 NA NA 50.00 60.00 40.00 NA NA 40.00 NA 33.33 57.14 NA NA NA NA 37.50 NA NA 37.50 NA 50.00 NA NA NA NA 54.55 NA 37.50 NA NA NA 50.00 50.00 33.33 40.00 K intron_retention CG14741 chr3R - chr3R_7897251_7898049 chr3R_7897250_7897251;chr3R_7898049_7898050 chr3R_7897104_7897250;chr3R_7898050_7898194 46.91 49.48 49.33 39.26 50.72 49.38 48.98 50.00 55.41 41.67 57.69 44.78 66.07 50.00 51.11 48.05 44.74 60.87 48.75 41.96 50.88 55.05 49.34 45.61 46.91 40.96 39.06 40.54 50.00 39.64 45.98 44.44 45.07 49.57 43.06 48.35 42.98 48.31 45.71 24.79 34.38 54.27 44.93 41.94 44.44 55.36 49.23 40.00 46.85 47.92 44.83 45.33 53.70 51.28 44.74 44.83 48.10 39.13 N alternative_donor Lag1,RI_chrX_6153758_6153930,I_chrX_6153758_6155077,RI_chrX_6153758_6161036,I_chrX_6160907_6161036 chrX - chrX_6153758_6154631;chrX_6153758_6153930;chrX_6153758_6161036;chrX_6153758_6154193;chrX_6153758_6154358;chrX_6153758_6160439 chrX_6153758_6155077 chrX_6153658_6153757;chrX_6161037_6161136 0.97 1.22 0.83 0.29 1.12 0.52 0.61 0.54 0.75 1.28 0.49 0.50 0.46 0.97 0.42 0.67 1.53 0.91 1.69 0.76 1.37 1.48 1.17 0.32 2.08 3.11 5.15 2.48 1.07 1.49 1.38 1.57 1.10 0.27 0.47 0.92 1.30 0.88 1.81 0.74 2.16 0.22 0.51 1.16 2.45 0.34 0.82 0.94 0.70 0.42 0.96 1.18 4.08 1.69 0.40 1.91 3.33 3.36 K cassette Mef2,CREFI_chr2R_5809509_5845628,RI_chr2R_5846889_5846948 chr2R - chr2R_5809509_5845628 chr2R_5809509_5828440;chr2R_5828459_5845628 chr2R_5828441_5828458 chr2R_5809499_5809508;chr2R_5845629_5845671 77.35 90.91 77.78 52.63 NA 55.56 52.63 68.18 88.89 NA 75.00 60.00 NA 81.82 90.00 71.43 NA NA 63.64 76.47 88.89 NA 82.35 90.00 NA 66.67 81.82 NA NA 90.91 90.91 NA NA 63.16 NA NA 69.23 87.50 100.00 85.00 66.67 72.00 87.50 71.43 NA 69.23 NA 78.57 63.16 NA 78.57 88.89 NA NA 76.92 NA NA NA K alternative_acceptor Cap chrX - chrX_16486780_16486976 chrX_16486828_16486976 chrX_16486977_16487116;chrX_16483660_16486779 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD None chrU + chrU_1182323_1183262;chrU_1178980_1183262 chrU_1179335_1183262 97.03 96.40 97.33 97.37 99.03 95.48 96.60 99.68 97.70 98.67 98.68 97.83 96.50 97.16 96.34 97.41 95.51 96.36 97.25 96.58 98.94 99.08 95.38 93.89 98.39 97.76 99.24 95.92 98.36 97.03 97.46 95.76 85.25 96.49 87.04 98.25 96.47 94.52 97.94 98.32 96.93 97.55 97.76 98.48 94.96 98.35 98.14 97.67 96.55 93.94 95.21 93.00 96.43 96.52 99.18 96.69 96.23 96.51 K intron_retention CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1523970_1524026 chr3L_1523969_1523970;chr3L_1524026_1524027 chr3L_1523914_1523969;chr3L_1524027_1524139 0.00 0.00 3.23 0.00 0.00 0.00 2.70 0.00 0.00 NA 7.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 8.33 6.67 2.86 NA 11.76 0.00 3.23 0.00 0.00 6.00 0.00 0.00 0.00 0.00 0.00 0.00 22.73 0.00 0.00 0.00 0.00 0.00 0.00 23.08 2.50 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Jupiter,I_chr3R_7417030_7419354,I_chr3R_7417630_7417716,I_chr3R_7418347_7445425,RI_chr3R_7442793_7445425 chr3R - chr3R_7417030_7417716 chr3R_7417029_7417030;chr3R_7417716_7417717 chr3R_7416930_7417029;chr3R_7417717_7417734 90.00 90.91 NA 71.43 NA NA 100.00 88.89 94.12 NA NA 90.91 NA NA NA 90.00 NA NA NA 93.33 88.89 100.00 85.71 75.00 NA NA 70.00 90.00 NA NA NA 90.00 NA 88.89 87.50 NA 88.89 88.89 88.89 94.44 90.00 100.00 NA NA 81.82 92.86 88.89 100.00 92.31 90.00 94.44 NA NA 100.00 88.89 100.00 72.73 NA K alternative_donor CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4839561;chr3R_4839215_4839851;chr3R_4839215_4839728;chr3R_4839215_4839889;chr3R_4839215_4839799 chr3R_4839215_4839655 chr3R_4839038_4839214;chr3R_4839890_4839901 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention REFI_chr2R_10491644_10491701,CG12868 chr2R - chr2R_10492611_10492671 chr2R_10492610_10492611;chr2R_10492671_10492672 chr2R_10491953_10492610;chr2R_10492672_10492842 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA 0.00 15.00 NA 0.00 NA NA NA NA 10.00 NA NA NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA NA K intron_retention CG18596,I_chr3R_18203637_18203690,I_chr3R_18209085_18209133 chr3R + chr3R_18201969_18202031 chr3R_18201968_18201969;chr3R_18202031_18202032 chr3R_18201639_18201968;chr3R_18202032_18202926 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.59 97.14 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG15107,I_chr2R_14859289_14859333 chr2R - chr2R_14859289_14859333;chr2R_14859269_14859333 chr2R_14859281_14859333 chr2R_14859334_14859398;chr2R_14859203_14859268 57.14 52.94 50.00 60.00 57.14 58.33 50.00 50.00 58.97 62.50 58.82 50.00 60.00 66.67 42.86 61.11 40.00 56.52 55.56 56.00 52.38 58.33 65.38 57.69 55.00 57.14 56.52 62.50 56.00 64.00 48.15 52.27 68.29 50.00 39.13 55.56 61.54 66.67 58.06 65.31 67.50 58.33 64.00 50.00 58.54 45.45 53.85 49.02 64.58 70.97 52.17 43.75 54.55 58.82 65.38 51.61 60.61 59.77 K intron_retention Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21129083_21132033 chr2L_21129082_21129083;chr2L_21132033_21132034 chr2L_21128779_21129082;chr2L_21132034_21132685 4.50 0.00 7.41 2.63 0.00 6.25 11.76 6.67 2.63 5.00 0.00 11.54 NA 0.00 5.88 0.00 4.35 6.45 0.00 7.81 0.00 6.67 5.00 2.00 5.56 0.00 6.00 20.00 0.00 6.82 3.23 0.00 14.71 3.92 9.68 3.39 1.49 2.04 4.55 10.64 0.00 1.41 0.00 4.44 7.69 6.25 5.00 28.57 3.33 0.00 6.90 7.41 7.69 7.14 0.00 0.00 0.00 5.26 K intron_retention crol,I_chr2L_11799403_11802904 chr2L - chr2L_11800323_11802286 chr2L_11800322_11800323;chr2L_11802286_11802287 chr2L_11800155_11800322;chr2L_11802287_11802336 16.67 13.56 17.43 20.72 16.16 18.10 28.90 16.57 18.31 7.69 20.72 24.87 18.10 17.05 21.43 18.80 17.27 20.20 21.78 20.70 15.79 26.97 13.68 14.08 14.50 25.47 17.82 28.43 11.11 14.68 20.99 13.21 10.00 16.67 14.46 12.00 13.11 11.76 10.39 10.11 16.22 19.72 23.30 11.36 10.00 16.67 11.11 17.86 20.11 13.51 13.86 11.32 6.67 17.46 19.01 17.72 9.88 17.50 K alternative_donor CG9140,I_chr2L_6062436_6062583 chr2L - chr2L_6062436_6062641 chr2L_6062436_6062583 chr2L_6062336_6062435;chr2L_6062642_6062683 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.47 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8668 chr2L + chr2L_8131913_8131972 chr2L_8131912_8131913;chr2L_8131972_8131973 chr2L_8131287_8131912;chr2L_8131973_8132194 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 1.30 0.00 0.00 0.00 5.06 4.17 0.00 2.33 0.43 0.00 0.00 0.00 0.00 1.54 0.00 1.08 6.82 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.44 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA mmd chrX - chrX_15843011_15843552 chrX_15843028_15843552 chrX_15843553_15843849;chrX_15842400_15843010 62.50 61.29 NA NA 64.00 74.07 62.50 71.05 70.13 NA NA NA 73.91 62.50 53.85 NA NA 47.83 65.00 58.46 NA NA NA 54.17 NA NA NA NA NA NA 51.85 NA NA 41.03 NA NA 62.50 NA 59.38 NA NA 57.14 NA NA NA NA 58.33 NA 54.00 NA 66.67 NA NA NA 62.96 NA 74.42 NA K intron_retention zip,I_chr2R_20878796_20879147 chr2R - chr2R_20878796_20879332 chr2R_20878795_20878796;chr2R_20879332_20879333 chr2R_20878696_20878795;chr2R_20879333_20879496 0.38 0.54 0.24 0.00 0.00 0.49 1.40 0.58 0.63 0.00 0.71 1.40 1.29 0.53 0.00 1.13 0.00 0.55 0.00 0.56 0.87 1.47 0.92 0.23 0.36 0.00 0.78 0.38 0.44 1.33 0.41 0.00 0.36 0.87 0.00 0.00 0.25 0.00 0.00 0.76 0.37 0.22 0.50 0.32 0.34 0.92 0.47 0.78 0.49 0.58 0.00 0.00 0.31 0.00 0.00 0.24 0.63 0.00 K intron_retention noncoding_18164,F_chr3R_17192061_17200781,RI_chr3R_17192484_17193084 chr3R + chr3R_17192932_17193084 chr3R_17192931_17192932;chr3R_17193084_17193085 chr3R_17192696_17192931;chr3R_17193085_17193184 0.00 0.00 NA 3.45 0.00 NA 3.85 0.00 3.23 NA NA 5.56 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 3.23 NA NA 0.00 5.26 5.00 4.35 1.64 11.11 0.00 5.26 NA NA 0.00 0.00 0.00 4.35 0.00 3.45 NA 0.00 0.00 3.23 0.00 8.33 8.00 0.00 3.45 NA NA 0.00 0.00 13.33 0.00 10.53 K jcn_only_AA CG6860,RFI_chr2L_17371821_17372564 chr2L - chr2L_17368389_17372564 chr2L_17371821_17372564 chr2L_17372565_17372642;chr2L_17368289_17368388 21.64 17.61 23.78 23.33 21.13 11.27 20.00 18.29 24.40 24.11 22.95 20.35 20.37 21.60 23.78 28.67 17.48 27.54 18.32 23.51 26.50 15.17 23.27 25.36 20.91 12.10 21.64 22.22 28.15 28.92 22.40 10.48 28.09 20.97 22.29 19.55 27.02 21.79 22.44 25.41 15.93 24.60 20.00 32.98 12.50 14.44 23.15 25.12 20.00 19.62 27.87 22.64 18.92 20.63 19.71 14.45 15.79 15.32 K intron_retention CG32103,I_chr3L_12398261_12403200 chr3L - chr3L_12398037_12398101 chr3L_12398036_12398037;chr3L_12398101_12398102 chr3L_12397463_12398036;chr3L_12398102_12398260 1.14 0.00 1.94 2.56 1.14 0.00 0.00 3.25 0.54 0.00 0.00 2.41 0.00 0.00 0.00 0.00 1.37 0.00 2.41 0.99 0.00 1.44 2.53 1.68 1.19 2.06 6.84 7.61 2.56 0.83 1.00 0.00 0.83 1.71 4.49 2.50 1.14 2.06 1.82 0.57 1.59 1.05 1.35 0.00 0.00 0.00 0.00 3.80 2.40 0.00 1.29 0.00 4.94 1.47 0.00 0.00 1.67 0.99 K intron_retention Nhe1,I_chr2L_105456_106437,CRE_chr2L_105910_105964,F_chr2L_105910_105968,I_chr2L_105916_106437 chr2L - chr2L_105916_105968 chr2L_105915_105916;chr2L_105968_105969 chr2L_105816_105915;chr2L_105969_106064 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 6.06 6.25 0.00 NA NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention aux chr3R + chr3R_47040_47477 chr3R_47039_47040;chr3R_47477_47478 chr3R_46840_47039;chr3R_47478_47708 0.53 2.78 2.00 2.50 3.28 0.00 2.17 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.92 1.27 3.12 2.26 1.83 3.12 0.00 5.32 3.75 0.53 0.77 2.22 0.00 0.00 0.84 0.00 4.85 1.52 0.00 0.00 1.22 0.00 2.92 2.08 3.54 0.00 0.00 0.00 0.71 0.58 1.96 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 K intron_retention CG12054 chr3R + chr3R_27051184_27051534 chr3R_27051183_27051184;chr3R_27051534_27051535 chr3R_27050956_27051183;chr3R_27051535_27051798 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention SmG chrX - chrX_16534064_16534125 chrX_16534063_16534064;chrX_16534125_16534126 chrX_16533995_16534063;chrX_16534126_16534194 0.77 1.20 0.54 0.76 2.48 1.25 2.71 0.64 1.20 0.35 3.31 1.03 0.00 0.00 1.21 0.48 0.00 0.00 0.84 0.66 0.00 3.09 0.55 0.60 5.19 4.81 1.50 4.90 13.40 0.84 1.05 0.30 0.69 0.59 1.53 1.16 0.90 0.00 1.20 0.59 5.93 0.74 0.85 0.47 0.58 0.63 0.00 0.87 0.77 0.69 1.13 1.16 1.04 0.33 0.95 0.47 0.29 0.67 K jcn_only_AA l(1)G0196,I_chrX_21900456_21904601 chrX + chrX_21898150_21898203;chrX_21898150_21898212 chrX_21898150_21898215 chrX_21897878_21898149;chrX_21898216_21898384 15.64 17.81 11.84 17.78 16.67 9.86 23.08 8.91 15.97 19.51 14.29 13.60 25.00 19.72 21.78 15.12 11.43 19.35 22.97 18.45 13.21 7.69 8.05 11.86 17.50 9.84 12.12 16.67 4.35 20.00 14.41 NA 26.09 10.71 11.54 16.67 18.09 13.33 12.68 17.74 10.00 13.75 11.67 18.18 16.67 23.21 15.91 33.33 14.00 16.00 15.38 19.23 3.23 16.13 14.14 14.63 15.22 20.00 K cassette Ephrin,I_chr4_595055_597604,RI_chr4_596272_596341 chr4 + chr4_595055_596327 chr4_595055_595960;chr4_596272_596327 chr4_595961_596271 chr4_594955_595054;chr4_596328_596921 100.00 100.00 97.44 94.74 96.43 100.00 98.99 98.98 100.00 100.00 100.00 98.82 100.00 97.96 100.00 98.90 100.00 97.37 96.49 100.00 96.77 96.55 97.67 100.00 100.00 76.67 100.00 95.24 92.31 100.00 97.96 100.00 100.00 98.97 100.00 86.67 96.15 100.00 100.00 97.92 100.00 98.81 97.56 97.67 100.00 100.00 100.00 100.00 99.05 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor I_chrX_5796578_5796722,CG4020,CG3726 chrX + chrX_5835305_5835381 chrX_5835305_5835358 chrX_5835198_5835304;chrX_5835382_5835509 7.50 NA NA 19.23 NA NA NA NA NA NA NA 18.18 NA NA NA NA NA 10.53 NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA 6.67 NA NA 6.67 0.00 NA NA NA NA NA 12.50 NA NA 0.00 NA NA 13.33 6.67 NA NA NA NA 8.33 NA NA N alternative_donor CG8229,CG33199 chr2R - chr2R_4836447_4836515;chr2R_4836447_4837350 chr2R_4836447_4838210 chr2R_4835619_4836446;chr2R_4838211_4838296 35.29 39.05 43.22 34.89 40.27 45.13 19.93 39.79 33.25 42.14 20.35 36.25 38.76 34.66 35.22 29.31 40.00 25.25 34.34 34.52 26.06 19.49 39.08 39.33 38.56 33.52 29.07 31.58 15.71 37.23 30.33 35.29 27.68 41.81 40.59 26.06 36.73 40.78 41.64 40.35 13.37 36.48 37.41 38.99 40.53 38.29 32.04 28.00 43.12 32.51 35.23 41.03 33.00 40.64 34.85 42.45 21.73 29.52 K multi_cassette LpR2 chr3R - chr3R_21527384_21539563 chr3R_21527384_21532008;chr3R_21532208_21532537;chr3R_21533936_21535012;chr3R_21535240_21539258;chr3R_21539379_21539563 chr3R_21532009_21532207;chr3R_21532538_21533935;chr3R_21535013_21535239;chr3R_21539259_21539378 chr3R_21527372_21527383;chr3R_21539564_21539578 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA NA 100.00 100.00 NA NA NA NA NA NA NA 100.00 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA K alternative_donor Cip4,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4324448_4324921 chr3L_4324448_4324861 chr3L_4324284_4324447;chr3L_4324922_4324996 37.31 32.32 32.23 28.48 46.38 34.04 43.98 31.18 37.19 71.43 39.13 29.79 52.46 37.63 35.58 31.47 38.27 68.93 43.33 31.73 39.68 31.43 37.76 40.00 32.04 32.81 49.45 50.00 51.02 43.75 41.18 36.36 32.32 32.17 34.92 29.91 38.98 36.26 30.37 20.49 40.74 37.31 36.99 37.65 37.65 42.50 40.85 48.96 35.10 39.62 36.97 38.24 35.62 31.48 35.34 30.38 41.94 55.91 K intron_retention CG8060,CG30096,I_chr2R_12220926_12223455 chr2R - chr2R_12206802_12206854 chr2R_12206801_12206802;chr2R_12206854_12206855 chr2R_12206658_12206801;chr2R_12206855_12206982 12.50 NA NA 14.29 NA NA 12.50 25.00 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG6891,RI_chrX_18670889_18674713,I_chrX_18673576_18674713,RI_chrX_18674227_18674713 chrX + chrX_18669663_18674713 chrX_18669662_18669663;chrX_18674713_18674714 chrX_18669258_18669662;chrX_18674714_18674813 0.83 0.57 0.46 1.29 0.76 0.98 0.80 0.88 0.81 0.20 0.83 0.80 0.72 1.30 0.84 1.24 1.07 4.94 0.52 0.42 0.38 1.25 1.19 0.83 0.94 1.23 1.26 2.58 2.29 0.94 0.71 0.57 1.50 0.81 1.57 0.80 0.86 0.84 0.63 0.50 0.67 0.90 0.38 0.83 0.48 0.65 0.73 1.20 0.70 0.85 0.86 1.03 0.70 0.79 1.07 0.63 0.79 0.62 K intron_retention gro chr3R + chr3R_21870349_21871196 chr3R_21870348_21870349;chr3R_21871196_21871197 chr3R_21870166_21870348;chr3R_21871197_21871385 8.52 0.00 14.29 10.00 NA NA 21.43 13.33 19.23 NA 0.00 8.70 NA NA 0.00 NA NA NA 0.00 5.00 NA 14.81 7.69 10.00 12.50 NA 9.52 14.29 NA 22.22 NA 0.00 6.67 5.00 0.00 25.00 20.00 0.00 6.06 6.25 10.53 6.45 NA 20.00 8.33 NA NA 4.55 9.09 NA 0.00 NA 0.00 NA NA 13.33 10.53 0.00 K alternative_donor CG8188,I_chrX_17595810_17596592 chrX - chrX_17594911_17595002 chrX_17594911_17594995 chrX_17593833_17594910;chrX_17595003_17595198 97.30 97.44 97.67 100.00 96.55 96.55 93.22 91.46 94.59 97.50 93.94 98.68 94.44 97.30 97.96 98.70 96.55 92.16 96.23 98.75 100.00 95.45 98.31 100.00 97.22 98.28 97.37 96.43 97.67 92.19 98.65 98.73 98.80 96.51 97.73 100.00 82.61 96.43 98.08 96.70 97.53 94.37 86.67 97.30 97.53 96.99 98.68 98.21 96.59 97.30 96.00 89.66 100.00 98.28 94.64 96.08 93.75 97.71 K jcn_only_AD eIF-5A,I_chr2R_19945430_19946454,I_chr2R_19945576_19946006,I_chr2R_19945723_19946006,I_chr2R_19945783_19946006,I_chr2R_19945852_19946006,I_chr2R_19945875_19946006,I_chr2R_19945921_19946006,I_chr2R_19946299_19946454,I_chr2R_19946657_19946733,I_chr2R_19948517_19948682 chr2R + chr2R_19945576_19946006;chr2R_19945921_19946006;chr2R_19945426_19946006;chr2R_19945875_19946006 chr2R_19945430_19946006 chr2R_19946007_19946106;chr2R_19945343_19945425 96.29 96.06 96.21 95.58 96.66 96.56 96.83 96.06 96.96 95.88 97.42 96.23 96.73 96.30 96.27 97.08 96.82 96.29 96.45 96.11 96.17 93.89 96.83 97.40 96.81 95.60 95.32 95.81 93.91 93.27 96.05 95.50 93.81 96.37 95.49 94.83 96.97 97.34 96.72 96.81 95.36 96.64 96.57 97.08 95.75 96.04 96.38 95.33 96.58 96.56 95.46 97.53 95.93 95.84 96.66 96.80 96.86 94.90 K jcn_only_AD Reg-5,I_chr2R_20676374_20676658,RI_chr2R_20676692_20676888 chr2R - chr2R_20676374_20676658 chr2R_20676374_20676501 chr2R_20676274_20676373;chr2R_20676659_20676691 98.63 99.13 100.00 99.02 98.63 98.85 100.00 100.00 100.00 96.55 98.18 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 91.40 98.43 95.77 99.05 100.00 100.00 96.77 95.65 97.47 99.00 100.00 96.55 98.45 95.77 95.88 98.42 97.60 98.84 98.32 96.36 99.38 96.92 98.98 97.50 96.26 98.19 91.89 98.66 97.50 98.40 98.59 99.07 99.17 98.96 99.16 98.53 97.06 K intron_retention CG7453,I_chrX_19074505_19075656 chrX + chrX_19074505_19074561 chrX_19074504_19074505;chrX_19074561_19074562 chrX_19074405_19074504;chrX_19074562_19074981 90.16 91.49 93.33 93.03 87.31 90.83 90.80 86.90 91.05 94.29 90.16 86.89 87.00 92.78 89.71 94.00 93.00 88.71 86.40 91.75 91.35 94.86 95.68 91.67 90.70 89.92 92.62 97.20 88.78 84.07 89.15 86.81 93.52 89.80 89.58 93.75 92.52 90.91 89.92 87.98 90.62 90.25 86.54 87.72 84.62 86.90 87.18 93.02 90.95 88.54 87.68 91.35 83.65 86.81 91.03 87.22 89.83 89.40 K alternative_donor CG6043,I_chr2L_13267973_13268086 chr2L + chr2L_13271628_13272233 chr2L_13271973_13272233 chr2L_13272234_13272242;chr2L_13271624_13271627 80.00 83.33 NA NA NA NA NA NA 81.82 71.43 NA 87.50 NA NA 100.00 100.00 NA NA 100.00 80.00 NA 83.33 71.43 45.45 100.00 NA 66.67 66.67 100.00 100.00 80.00 NA 87.50 80.00 71.43 88.89 56.25 75.00 66.67 66.67 75.00 55.56 NA 77.78 85.71 100.00 85.71 75.00 66.67 71.43 85.71 NA 85.71 62.50 NA 83.33 87.50 80.00 K intron_retention CG7655,CG31360 chr3R + chr3R_13508838_13508896 chr3R_13508837_13508838;chr3R_13508896_13508897 chr3R_13508407_13508837;chr3R_13508897_13509483 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Karl,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11685029_11685093 chrX_11685028_11685029;chrX_11685093_11685094 chrX_11684961_11685028;chrX_11685094_11685176 0.67 0.69 0.95 0.72 0.46 0.37 0.61 0.46 0.59 0.83 0.67 0.67 0.66 0.94 0.74 0.63 0.70 0.50 0.60 0.77 0.91 0.49 0.36 0.32 0.18 0.70 0.83 0.44 1.42 0.55 0.91 1.18 0.30 0.73 1.07 0.95 0.52 0.50 0.51 0.47 0.64 0.64 1.24 0.47 0.91 0.85 0.68 0.73 0.93 0.85 1.10 0.78 0.42 0.66 0.60 0.42 0.64 0.91 K intron_retention alph,I_chr3R_25417890_25422962 chr3R + chr3R_25423631_25423885 chr3R_25423630_25423631;chr3R_25423885_25423886 chr3R_25423562_25423630;chr3R_25423886_25424323 1.28 0.00 0.00 1.71 0.00 0.00 3.70 3.14 1.43 0.00 0.00 3.80 0.00 2.20 1.30 2.17 2.44 0.00 0.77 1.00 0.00 6.38 1.83 1.41 0.00 2.90 4.17 4.41 6.25 0.00 0.79 1.64 1.09 2.08 0.00 3.64 0.00 0.00 0.00 2.96 2.15 2.96 0.00 0.00 0.00 4.40 0.00 1.28 1.59 0.91 0.00 0.00 1.89 0.00 1.98 1.37 1.89 0.00 K multi_cassette unk,I_chr3R_18980963_18981530 chr3R - chr3R_18980693_18981530 chr3R_18980693_18980853;chr3R_18980963_18981161;chr3R_18981272_18981530 chr3R_18980854_18980962;chr3R_18981162_18981271 chr3R_18980567_18980692;chr3R_18981531_18981630 100.00 NA NA NA NA NA NA 85.71 100.00 NA NA 100.00 83.33 NA NA 83.33 NA NA 100.00 90.00 NA 100.00 NA NA NA NA NA 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA 75.00 NA 100.00 NA 100.00 NA NA NA NA NA 100.00 75.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention CG17665 chr2R - chr2R_126662_129593 chr2R_126661_126662;chr2R_129593_129594 chr2R_126199_126661;chr2R_129594_129936 1.73 NA 6.25 7.69 0.00 NA 6.06 4.65 10.87 NA NA 4.44 0.00 0.00 0.00 4.00 3.45 12.50 5.71 5.71 0.00 NA NA NA NA 0.00 26.67 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2364594 chr2L_2361585_2361586;chr2L_2364594_2364595 chr2L_2361486_2361585;chr2L_2364595_2364595 7.28 NA 11.76 13.79 7.69 7.14 8.89 17.24 7.14 NA NA 7.41 9.52 NA 0.00 7.69 0.00 8.33 9.52 2.44 0.00 28.57 12.50 NA NA 9.09 15.38 NA 11.11 11.11 8.00 NA 0.00 10.71 20.00 0.00 NA NA 0.00 14.29 0.00 5.71 5.56 0.00 0.00 2.94 0.00 8.00 6.25 NA 0.00 NA NA 0.00 8.00 5.88 0.00 4.55 K intron_retention bor chr3R - chr3R_12088809_12088868 chr3R_12088808_12088809;chr3R_12088868_12088869 chr3R_12087984_12088808;chr3R_12088869_12089343 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Pegarn chr3L + chr3L_12788186_12788262 chr3L_12788189_12788262 chr3L_12788263_12788330;chr3L_12788120_12788185 92.59 94.74 93.75 94.12 87.50 87.50 91.67 93.33 96.43 87.50 92.31 84.00 NA 91.67 92.31 88.89 NA 100.00 91.67 94.12 100.00 96.15 96.15 91.30 84.62 100.00 89.47 94.12 90.91 91.67 90.00 NA 91.67 94.12 86.67 100.00 92.59 94.44 92.50 79.17 88.89 81.08 100.00 94.12 95.65 95.00 95.24 93.75 93.33 92.59 94.44 94.12 86.36 85.71 95.24 100.00 84.62 77.78 K intron_retention kek1 chr2L - chr2L_12818996_12819258 chr2L_12818995_12818996;chr2L_12819258_12819259 chr2L_12818930_12818995;chr2L_12819259_12822787 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.25 100.00 100.00 98.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9785143,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9770053_9781634 chr2R_9770052_9770053;chr2R_9781634_9781635 chr2R_9769906_9770052;chr2R_9781635_9782097 70.30 72.00 78.95 67.31 72.73 65.00 87.10 61.40 72.97 58.82 61.11 82.35 69.23 87.50 70.00 75.68 86.36 85.00 63.33 60.78 60.00 68.75 63.33 70.59 61.54 83.33 70.83 90.48 63.89 84.85 57.58 NA 64.15 82.14 71.43 71.79 63.33 NA 55.56 74.47 NA 64.15 72.00 70.97 NA 70.00 NA 79.17 83.72 NA 64.29 60.00 100.00 NA 66.67 NA NA 63.64 K multi_cassette bip2,RI_chr4_481674_482028,RI_chr4_481674_487126,RI_chr4_482358_482702,RI_chr4_483128_487126,RI_chr4_483144_483680,RI_chr4_486609_487126 chr4 - chr4_481674_487126 chr4_481674_482130;chr4_482955_483013;chr4_483128_483680;chr4_485355_485422;chr4_485855_487126 chr4_482131_482954;chr4_483014_483127;chr4_483681_485354;chr4_485423_485854 chr4_481574_481673;chr4_487127_487226 100.00 87.50 100.00 92.31 83.33 100.00 100.00 100.00 96.00 100.00 100.00 88.89 100.00 100.00 90.91 86.96 90.91 80.00 92.86 88.24 100.00 100.00 100.00 87.50 100.00 100.00 87.50 100.00 80.00 100.00 75.00 100.00 80.00 95.65 100.00 100.00 100.00 100.00 100.00 83.33 80.00 100.00 90.91 100.00 100.00 100.00 85.71 100.00 100.00 100.00 91.67 83.33 80.00 100.00 100.00 100.00 75.00 100.00 K alternative_acceptor Arc-p34 chr2L + chr2L_20420413_20420494 chr2L_20420413_20420489 chr2L_20420319_20420412;chr2L_20420495_20420589 99.66 99.34 100.00 99.66 99.11 99.31 100.00 99.67 100.00 98.73 100.00 100.00 99.21 99.32 99.46 100.00 100.00 100.00 100.00 99.75 100.00 99.20 99.59 99.01 100.00 99.43 99.52 99.22 100.00 99.14 99.07 99.16 99.17 100.00 100.00 99.29 100.00 100.00 99.38 99.61 99.15 100.00 99.26 99.33 100.00 99.46 100.00 99.26 99.72 100.00 100.00 99.25 100.00 100.00 100.00 99.48 99.66 99.55 K intron_retention tud,I_chr2R_17086183_17086333 chr2R + chr2R_17074553_17074607 chr2R_17074552_17074553;chr2R_17074607_17074608 chr2R_17073474_17074552;chr2R_17074608_17075437 0.00 0.00 0.00 0.89 0.00 0.00 1.43 1.51 1.27 2.56 0.00 1.62 0.00 0.00 2.72 2.45 2.94 0.00 0.00 2.90 0.00 0.98 3.95 0.00 0.00 0.00 5.56 16.00 0.00 1.28 1.60 0.00 1.45 1.99 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.93 1.94 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 K intron_retention CG10638 chr3L - chr3L_12494143_12494264 chr3L_12494142_12494143;chr3L_12494264_12494265 chr3L_12493975_12494142;chr3L_12494265_12494405 21.43 NA NA NA NA NA 46.15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 14.29 NA NA NA NA NA NA NA K intron_retention CG32676 chrX - chrX_10609173_10609232 chrX_10609172_10609173;chrX_10609232_10609233 chrX_10605951_10609172;chrX_10609233_10611425 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor sqh,I_chrX_6118043_6119039,I_chrX_6118150_6118725,I_chrX_6118150_6118729,I_chrX_6118150_6118790,I_chrX_6118150_6118800 chrX - chrX_6118150_6118729;chrX_6118150_6118725;chrX_6118150_6119039;chrX_6118150_6118949 chrX_6118150_6119035 chrX_6118050_6118149;chrX_6119040_6119139 0.60 0.62 0.83 0.20 0.29 0.28 0.39 0.21 0.60 0.00 0.29 0.55 0.60 0.31 8.60 0.43 0.66 0.32 0.25 0.44 0.62 0.53 0.85 0.23 0.00 0.25 0.43 0.74 1.40 1.03 0.62 1.00 0.82 0.52 0.86 0.00 0.82 0.79 0.39 0.68 0.45 0.55 0.96 0.97 0.83 0.55 0.24 1.21 0.71 0.53 0.63 0.32 0.73 0.68 0.68 0.45 1.03 0.73 K alternative_donor exd chrX + chrX_15887147_15887504;chrX_15886884_15887504;chrX_15886888_15887504;chrX_15886827_15887504;chrX_15886958_15887504;chrX_15886802_15887504;chrX_15887006_15887504 chrX_15886821_15887504 chrX_15887505_15887806;chrX_15886739_15886801 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824086_11825183 chr2R_11824085_11824086;chr2R_11825183_11825184 chr2R_11823989_11824085;chr2R_11825184_11825384 18.42 18.42 12.50 43.59 9.52 6.67 19.51 15.58 20.31 16.13 14.29 22.32 29.03 29.73 26.53 29.17 31.25 26.67 18.18 16.67 16.67 14.60 21.15 15.31 23.26 10.81 14.12 41.67 28.85 21.54 25.81 26.56 19.54 17.33 17.39 22.45 15.04 16.67 21.09 23.01 28.57 15.08 15.15 34.00 15.49 21.74 17.65 25.42 15.93 11.00 18.42 19.51 13.51 17.39 24.00 14.93 12.12 13.16 K alternative_acceptor CG6340,I_chrX_15402291_15403750 chrX + chrX_15376571_15377231 chrX_15376571_15377214 chrX_15376446_15376570;chrX_15377232_15377453 7.69 13.64 7.69 14.29 NA NA 0.00 14.29 6.67 NA NA 18.18 NA 16.67 5.00 13.04 12.50 22.22 NA 13.51 NA 5.00 22.22 7.69 NA NA 7.69 NA 14.29 5.56 13.33 7.14 5.71 8.33 7.69 NA 6.67 6.67 10.53 17.86 40.00 6.45 NA 4.76 6.67 5.88 6.67 8.33 11.76 NA 14.29 NA NA NA 4.76 NA NA 6.45 N jcn_only_AA stc chr2L + chr2L_15114214_15114448;chr2L_15114214_15114299 chr2L_15114214_15114311 chr2L_15114049_15114213;chr2L_15114449_15115753 3.00 2.86 4.17 2.40 3.23 3.08 5.05 3.00 3.65 2.94 1.89 2.48 3.33 4.05 8.11 1.79 0.00 3.23 1.85 2.87 5.56 2.26 4.92 1.98 1.12 4.17 1.67 3.88 3.20 3.05 5.43 2.29 2.30 3.81 4.12 2.38 2.02 1.96 0.87 2.98 3.77 5.19 1.69 3.23 2.44 5.24 2.17 2.87 4.14 3.51 2.07 8.62 0.00 2.82 6.90 1.43 9.52 3.13 K cassette CG11266,RI_chr2L_7033019_7034180,RI_chr2L_7033019_7034764,I_chr2L_7034274_7034764,I_chr2L_7034274_7035406,I_chr2L_7051093_7051366 chr2L + chr2L_7033019_7034764;chr2L_7033019_7034483;chr2L_7033019_7035406 chr2L_7033019_7034198;chr2L_7034274_7034764,chr2L_7034274_7034483,chr2L_7034274_7035406 chr2L_7034199_7034273 chr2L_7032919_7033018;chr2L_7035407_7035506 12.02 11.11 6.90 4.55 10.71 18.18 5.41 20.45 11.84 13.21 13.64 9.59 28.57 17.65 12.50 20.00 24.00 9.68 14.29 11.25 13.64 2.63 13.04 13.21 4.17 2.94 7.32 9.09 9.09 14.29 26.19 17.24 8.20 21.43 7.14 NA 5.36 8.33 8.33 13.56 9.47 8.89 15.00 16.00 6.48 20.79 8.51 20.25 20.31 12.20 12.20 15.38 4.26 11.43 25.00 10.87 5.41 16.97 K alternative_donor achi,I_chr2R_8401767_8401934 chr2R - chr2R_8401767_8401848;chr2R_8401767_8401934 chr2R_8401767_8402280 chr2R_8401667_8401766;chr2R_8402281_8402519 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 95.65 NA NA 100.00 NA NA 100.00 96.43 100.00 NA 93.33 100.00 100.00 NA 100.00 100.00 93.33 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 94.44 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention mura,RI_chr3R_5373093_5377292,I_chr3R_5375533_5376618,RI_chr3R_5380786_5380850 chr3R - chr3R_5368647_5372519 chr3R_5368646_5368647;chr3R_5372519_5372520 chr3R_5368625_5368646;chr3R_5372520_5372875 6.90 NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_acceptor CG1115,F_chr3R_1052705_1053045 chr3R + chr3R_1052701_1053094 chr3R_1052701_1053045 chr3R_1052605_1052700;chr3R_1053095_1053145 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 82.69 100.00 100.00 100.00 100.00 76.92 100.00 100.00 100.00 100.00 K cassette CG8788,I_chr2R_5026774_5026825,RI_chr2R_5026774_5026866,RI_chr2R_5026774_5028942,RI_chr2R_5033951_5034150,I_chr2R_5036518_5036570 chr2R + chr2R_5026076_5027484 chr2R_5026076_5026598;chr2R_5026774_5027484 chr2R_5026599_5026773 chr2R_5026036_5026075;chr2R_5027485_5027803 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG1161,RI_chr3R_1181273_1181459 chr3R + chr3R_1181273_1181555;chr3R_1181273_1181459 chr3R_1181273_1181515 chr3R_1181173_1181272;chr3R_1181556_1181559 0.00 0.00 0.00 0.93 0.00 0.00 1.74 0.00 0.28 0.00 0.00 0.35 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.97 0.00 0.00 1.14 2.04 0.00 0.63 1.90 0.79 0.00 0.00 0.00 0.54 0.00 0.81 0.66 0.00 0.36 1.10 0.00 0.34 1.23 0.00 1.52 0.57 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 K jcn_only_AD Trf2,I_chrX_8318346_8318408 chrX + chrX_8317609_8317760 chrX_8317703_8317760 chrX_8317761_8318068;chrX_8317217_8317608 100.00 NA NA NA NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG30035 chr2R + chr2R_7560348_7560549 chr2R_7560347_7560348;chr2R_7560549_7560550 chr2R_7560222_7560347;chr2R_7560550_7561335 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.17 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA K mutually_exclusive dco,RI_chr3R_26883647_26884261,I_chr3R_26883651_26883729,RI_chr3R_26883651_26886096,I_chr3R_26884350_26884670,I_chr3R_26884350_26886671,I_chr3R_26884350_26886791,RI_chr3R_26884365_26886096,I_chr3R_26884365_26886798 chr3R - chr3R_26883651_26886096,chr3R_26886187_26886798 chr3R_26883651_26884261,chr3R_26884350_26886798 chr3R_26886097_26886186 chr3R_26884262_26884349 chr3R_26883551_26883650;chr3R_26886799_26886891 88.89 92.86 90.00 76.27 88.89 82.35 73.47 91.18 81.03 86.67 89.47 96.00 62.22 90.00 89.47 81.25 78.95 80.00 84.38 62.50 100.00 67.74 89.19 100.00 89.47 65.22 86.67 94.29 40.00 88.89 92.59 92.86 78.38 85.71 91.30 90.91 82.93 88.89 93.10 89.47 85.00 83.78 81.82 91.30 78.26 95.00 95.35 78.79 86.96 91.67 94.59 80.00 75.00 96.55 92.86 88.46 93.10 72.41 K alternative_donor Ssadh,RI_chr3R_21451890_21451963,I_chr3R_21452371_21452464,I_chr3R_21452407_21452453 chr3R - chr3R_21452371_21452464 chr3R_21452371_21452453 chr3R_21452307_21452370;chr3R_21452465_21452553 77.78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 77.78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N intron_retention CG32138 chr3L + chr3L_14058259_14059498 chr3L_14058258_14058259;chr3L_14059498_14059499 chr3L_14058172_14058258;chr3L_14059499_14060368 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.48 97.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 79.13 100.00 100.00 100.00 100.00 94.03 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 96.64 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.84 93.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_150069_150307;chr4_150069_150180;chr4_150069_150378;chr4_150069_150353;chr4_150069_150295 chr4_150069_150205 chr4_149969_150068;chr4_150379_150379 0.00 NA 0.00 0.00 0.00 0.00 5.00 0.00 6.25 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K alternative_donor osa,I_chr3R_13542657_13542834,I_chr3R_13542657_13543500,I_chr3R_13542657_13543662,I_chr3R_13542657_13543668 chr3R - chr3R_13542657_13543968;chr3R_13542657_13543500;chr3R_13542657_13543662;chr3R_13542657_13543668;chr3R_13542657_13543677 chr3R_13542657_13542834 chr3R_13542557_13542656;chr3R_13543969_13544017 1.32 1.69 1.72 0.93 1.96 1.61 1.01 0.91 1.32 0.00 0.00 1.52 1.43 1.45 1.47 0.99 1.39 0.00 1.28 0.70 1.69 5.56 0.88 1.39 1.89 1.75 1.23 2.13 4.08 1.14 1.69 0.00 2.17 0.81 1.89 1.32 1.10 0.00 2.60 0.76 4.17 1.63 1.67 1.35 0.00 0.00 3.33 2.20 0.70 0.00 1.06 0.00 0.00 0.00 1.23 0.00 0.00 2.63 K alternative_donor Pk61C,CE_chr3L_129889_141769,I_chr3L_132531_133824,I_chr3L_133962_134014 chr3L + chr3L_132056_135457;chr3L_132531_135457;chr3L_131959_135457 chr3L_131934_135457 chr3L_135458_135842;chr3L_131849_131933 0.00 6.25 0.00 0.00 10.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 3.85 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 7.14 10.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention klar,I_chr3L_462559_472609,RI_chr3L_517594_539898 chr3L - chr3L_436160_436221 chr3L_436159_436160;chr3L_436221_436222 chr3L_434304_436159;chr3L_436222_436604 0.00 0.00 1.28 1.49 0.83 0.00 0.00 0.37 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.95 5.71 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.37 0.00 0.00 0.00 0.94 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention G-salpha60A chr2R + chr2R_19833348_19833420 chr2R_19833347_19833348;chr2R_19833420_19833421 chr2R_19833219_19833347;chr2R_19833421_19833600 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.00 4.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 K alternative_donor Actn,I_chrX_1922061_1924247,I_chrX_1922784_1923807,I_chrX_1922784_1923873 chrX - chrX_1922784_1923873 chrX_1922784_1923807 chrX_1922698_1922783;chrX_1923874_1923907 84.52 NA NA NA NA NA 77.78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 87.50 NA NA NA NA NA 80.00 NA 85.71 NA NA NA NA NA 85.71 NA NA 62.50 NA 85.71 NA 77.78 100.00 NA NA 87.50 81.82 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG31365,RI_chr3R_18950918_18950979 chr3R - chr3R_18950918_18950983 chr3R_18950918_18950979 chr3R_18950818_18950917;chr3R_18950984_18951079 6.25 0.00 NA 0.00 NA 4.35 3.03 7.69 2.13 NA NA 6.06 NA NA 0.00 9.38 0.00 10.00 NA 6.25 4.76 19.23 4.55 4.17 15.00 10.00 11.11 NA NA NA 16.13 NA 22.73 6.45 NA 10.34 0.00 NA NA 3.33 3.57 12.20 NA NA NA 3.45 14.71 9.52 2.78 11.76 6.45 9.38 NA 0.00 7.69 5.41 7.41 5.00 K intron_retention RpL27A,E_chr2L_4457411_4457977,I_chr2L_4458058_4458120 chr2L - chr2L_4457290_4457374 chr2L_4457289_4457290;chr2L_4457374_4457375 chr2L_4457180_4457289;chr2L_4457375_4457410 0.99 1.07 0.95 1.06 0.64 1.02 1.85 0.74 0.73 1.82 1.51 0.84 0.91 0.64 0.53 0.78 0.42 0.79 0.81 1.48 0.99 1.56 1.64 0.83 2.47 2.37 1.48 1.83 28.28 1.94 0.88 1.77 0.80 1.02 1.62 7.10 0.85 1.16 0.94 0.94 3.62 0.66 0.76 0.76 0.96 1.78 0.67 2.03 0.99 1.31 1.71 0.72 1.45 2.17 0.71 0.74 0.80 1.54 K jcn_only_AD E(z),RI_chr3L_10629194_10629525,RI_chr3L_10629541_10629723 chr3L - chr3L_10629194_10629723 chr3L_10629194_10629525 chr3L_10629096_10629193;chr3L_10629724_10629823 0.83 0.00 3.28 1.61 0.00 1.39 1.33 1.19 1.60 0.00 0.00 1.65 1.47 1.89 0.00 1.20 2.13 3.70 0.00 0.63 0.00 0.00 1.88 0.83 1.64 0.00 2.02 1.61 0.00 1.47 2.00 0.00 1.69 2.17 1.59 0.00 0.00 0.00 0.80 0.00 1.69 0.79 1.79 0.00 7.55 0.00 0.88 0.00 2.07 0.87 0.71 0.00 0.00 0.00 0.00 0.00 2.42 0.00 K intron_retention CG30051 chr2R + chr2R_8323944_8324018 chr2R_8323943_8323944;chr2R_8324018_8324019 chr2R_8323879_8323943;chr2R_8324019_8324082 4.17 4.17 0.00 0.00 4.76 0.00 35.48 4.88 2.17 5.56 9.09 0.00 10.53 4.55 4.76 2.27 0.00 0.00 0.00 9.09 NA NA 3.12 0.00 7.69 18.52 11.43 13.04 0.00 4.76 3.85 0.00 0.00 9.09 0.00 NA 5.71 13.64 13.04 0.00 25.00 4.55 0.00 7.69 0.00 0.00 0.00 0.00 4.17 5.56 16.67 0.00 0.00 4.17 6.67 0.00 8.00 3.23 K jcn_only_AD nimB1 chr2L + chr2L_13964732_13964796 chr2L_13964739_13964796 chr2L_13964797_13964865;chr2L_13964670_13964731 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 97.78 96.67 97.30 97.92 100.00 98.63 95.00 NA 96.00 97.44 100.00 96.15 100.00 NA NA 100.00 99.15 95.65 100.00 100.00 NA NA 100.00 92.59 100.00 97.78 95.12 96.55 100.00 98.31 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 100.00 98.86 K cassette CG11266,RI_chr2L_7033019_7034764,I_chr2L_7034274_7034764,I_chr2L_7034274_7035406,I_chr2L_7051093_7051366 chr2L + chr2L_7033019_7034764;chr2L_7034274_7034764 chr2L_7033019_7034483,chr2L_7034274_7034483;chr2L_7034694_7034764 chr2L_7034484_7034693 chr2L_7032919_7033018;chr2L_7034765_7034823 100.00 100.00 100.00 100.00 100.00 100.00 91.67 96.55 96.67 100.00 100.00 96.67 100.00 100.00 90.00 95.45 100.00 85.71 100.00 100.00 100.00 77.78 92.31 100.00 83.33 NA 100.00 NA 80.00 92.86 96.30 100.00 87.50 100.00 100.00 NA 90.00 100.00 100.00 96.00 91.67 90.91 100.00 94.12 100.00 94.74 100.00 96.43 93.55 100.00 94.12 100.00 100.00 100.00 93.33 100.00 100.00 96.30 K jcn_only_AD As chr3L - chr3L_11200236_11200299 chr3L_11200236_11200297 chr3L_11199522_11200235;chr3L_11200300_11200790 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.90 96.00 98.33 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.46 100.00 98.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 K jcn_only_AA CCS,I_chr2R_6009946_6010014 chr2R - chr2R_6009964_6010014;chr2R_6009951_6010014 chr2R_6009946_6010014 chr2R_6010015_6010040;chr2R_6009884_6009945 4.06 NA NA 8.70 NA NA 4.55 0.00 0.00 NA NA 4.76 NA NA NA NA NA NA 5.00 3.45 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA 5.88 NA NA 0.00 4.55 10.00 NA 3.57 NA NA NA NA 5.00 NA NA 0.00 5.00 K jcn_only_AD CG8177,I_chr3L_9773353_9773506,I_chr3L_9773534_9773635,I_chr3L_9774319_9774602 chr3L + chr3L_9773309_9773635 chr3L_9773353_9773635 chr3L_9773636_9773735;chr3L_9773253_9773308 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.37 99.22 100.00 100.00 100.00 100.00 100.00 100.00 99.19 98.55 100.00 100.00 99.30 100.00 99.14 98.99 100.00 98.61 100.00 100.00 100.00 98.72 100.00 100.00 100.00 99.10 100.00 100.00 100.00 98.08 100.00 98.28 99.00 100.00 100.00 100.00 100.00 98.75 100.00 100.00 98.52 99.38 81.82 100.00 100.00 98.18 100.00 99.17 100.00 100.00 100.00 K intron_retention CG17660 chr2L - chr2L_1707999_1708060 chr2L_1707998_1707999;chr2L_1708060_1708061 chr2L_1707564_1707998;chr2L_1708061_1708214 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.80 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD inaE chrX + chrX_13678262_13679739;chrX_13678310_13679739 chrX_13678223_13679739 chrX_13679740_13679985;chrX_13677782_13678222 0.00 2.27 0.00 0.00 0.00 2.63 0.00 0.00 0.74 0.00 3.57 0.00 0.00 1.67 0.00 0.00 2.22 0.00 0.00 0.93 0.00 0.00 1.28 0.00 0.00 0.00 2.94 0.00 0.00 0.00 1.52 0.00 0.00 1.01 0.00 0.00 0.00 2.08 6.82 0.00 0.00 1.27 0.00 2.17 NA 2.08 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 1.92 0.00 0.00 0.00 K jcn_only_AD I_chr2L_8029734_8029787,Cka,CG7429 chr2L + chr2L_8030840_8032059;chr2L_8031163_8032059;chr2L_8031036_8032059;chr2L_8031309_8032059 chr2L_8031338_8032059 chr2L_8032060_8032641;chr2L_8030749_8030839 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ena chr2R + chr2R_15046858_15047299 chr2R_15046857_15046858;chr2R_15047299_15047300 chr2R_15046625_15046857;chr2R_15047300_15047324 0.00 0.00 2.44 2.86 0.00 0.00 2.13 0.00 1.30 0.00 0.00 0.47 0.00 1.75 0.93 3.92 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 3.64 1.54 2.22 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.94 1.46 0.00 0.00 0.85 1.37 0.83 0.00 0.00 0.00 2.29 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 2.44 0.00 0.00 0.67 K cassette CG11984,I_chr3R_4837327_4837383,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4837327_4837766 chr3R_4837327_4837395;chr3R_4837672_4837766 chr3R_4837396_4837671 chr3R_4837227_4837326;chr3R_4837767_4837866 99.53 98.84 98.88 99.08 100.00 100.00 98.75 100.00 99.52 100.00 98.41 100.00 100.00 100.00 100.00 98.21 98.28 100.00 100.00 99.61 98.31 98.53 98.56 99.59 99.44 100.00 99.46 98.24 99.53 98.25 98.59 99.41 99.58 100.00 99.36 98.14 98.99 99.54 99.42 99.63 100.00 99.56 100.00 99.32 99.66 99.53 100.00 99.46 100.00 98.50 99.52 98.17 100.00 99.50 98.89 100.00 100.00 100.00 N intron_retention CG34394,I_chr2L_3365674_3365965,RI_chr2L_3365677_3365965 chr2L - chr2L_3365976_3367244 chr2L_3365975_3365976;chr2L_3367244_3367245 chr2L_3365969_3365975;chr2L_3367245_3367719 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 71.11 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K intron_retention Nup153,I_chrX_16495232_16495296 chrX + chrX_16500042_16500894 chrX_16500041_16500042;chrX_16500894_16500895 chrX_16499883_16500041;chrX_16500895_16501032 0.00 2.94 0.00 13.33 0.00 3.23 5.00 3.12 3.57 0.00 0.00 4.55 7.14 11.76 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 5.56 7.69 3.23 0.00 2.94 4.35 0.00 2.50 6.25 0.00 0.00 0.00 3.33 1.82 5.80 0.00 2.82 4.76 0.00 1.92 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 7.41 0.00 0.00 0.00 K cassette Vha100-1,I_chr3R_24958227_24960770,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24959684_24960770 chr3R_24959684_24960278;chr3R_24960321_24960770 chr3R_24960279_24960320 chr3R_24959583_24959683;chr3R_24960771_24960870 23.81 18.18 20.00 70.59 11.76 35.71 35.00 50.00 19.23 18.75 33.33 81.63 NA 46.15 31.82 33.33 21.43 28.57 NA 17.24 31.58 27.78 17.65 16.67 23.33 43.75 14.29 15.38 23.81 12.00 47.06 36.36 20.00 24.14 18.75 37.04 17.86 13.16 20.69 13.33 25.00 26.83 NA 23.81 28.57 25.93 15.15 NA 28.21 27.27 19.61 20.00 19.05 10.00 33.33 17.24 19.44 28.57 K jcn_only_AA MB8.chr3R.pasa.66,CG1105,RI_chr3R_2892020_2892252,I_chr3R_2892305_2892645 chr3R - chr3R_2892020_2892645 chr3R_2892305_2892645 chr3R_2892646_2892745;chr3R_2891920_2892019 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 1.96 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 2.90 2.27 0.00 0.00 0.00 2.63 0.00 1.54 2.13 0.00 0.00 1.25 5.71 3.33 0.00 0.00 2.08 0.00 1.79 K intron_retention CG31159 chr3R + chr3R_18439846_18439902 chr3R_18439845_18439846;chr3R_18439902_18439903 chr3R_18439683_18439845;chr3R_18439903_18439974 14.29 NA NA NA NA NA NA NA 22.22 NA NA 14.29 NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N jcn_only_AD CG9646 chr2R + chr2R_12936500_12937513 chr2R_12936933_12937513 chr2R_12937514_12937680;chr2R_12936416_12936499 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 70.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA K jcn_only_AA mod(r),I_chrX_515823_515874,RI_chrX_515831_515923,I_chrX_516392_517480 chrX + chrX_515831_515874;chrX_515831_515885 chrX_515831_515923 chrX_515763_515830;chrX_515924_515974 2.29 2.56 0.00 2.70 0.00 3.12 4.17 1.85 6.15 0.00 7.14 0.00 2.94 0.00 0.00 4.17 NA 0.00 12.20 0.00 3.12 3.85 0.00 0.00 6.67 3.33 0.00 0.00 0.00 4.00 8.00 0.00 NA 2.13 NA 12.50 2.04 0.00 4.08 0.00 NA 3.39 0.00 2.44 19.05 0.00 4.65 NA 0.00 0.00 4.84 3.57 0.00 0.00 3.57 0.00 3.45 6.67 K jcn_only_AA CG10254 chr3R - chr3R_19518068_19518139 chr3R_19518083_19518139 chr3R_19518140_19518534;chr3R_19517793_19518067 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.00 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention stc chr2L + chr2L_15113995_15114048 chr2L_15113994_15113995;chr2L_15114048_15114049 chr2L_15113511_15113994;chr2L_15114049_15114213 100.00 100.00 99.13 100.00 100.00 100.00 100.00 99.47 100.00 100.00 100.00 99.60 100.00 98.88 100.00 100.00 100.00 100.00 100.00 99.75 98.82 100.00 100.00 99.61 100.00 100.00 99.65 99.65 100.00 100.00 100.00 100.00 99.76 100.00 100.00 99.66 99.70 99.56 100.00 100.00 100.00 100.00 100.00 100.00 99.59 100.00 100.00 100.00 99.59 100.00 100.00 100.00 99.45 100.00 100.00 100.00 100.00 100.00 K cassette Slip1,RI_chr4_684967_689045,I_chr4_685717_686576,RI_chr4_685717_689045,RI_chr4_687548_689045 chr4 + chr4_684967_689045 chr4_684967_686576;chr4_687548_689045 chr4_686577_687547 chr4_684914_684966;chr4_689046_689145 100.00 97.87 100.00 97.06 100.00 97.67 100.00 100.00 99.23 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 99.23 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 98.21 100.00 97.56 99.08 100.00 100.00 100.00 100.00 100.00 100.00 96.15 99.12 100.00 98.08 96.67 97.96 100.00 100.00 99.12 97.14 100.00 97.14 100.00 100.00 100.00 100.00 97.92 100.00 K jcn_only_AA mbc,I_chr3R_19615584_19615649,I_chr3R_19625220_19625288 chr3R + chr3R_19626118_19626200 chr3R_19626118_19626179 chr3R_19625973_19626117;chr3R_19626201_19626586 100.00 100.00 100.00 99.44 100.00 100.00 99.12 100.00 99.50 100.00 100.00 99.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.85 100.00 98.91 100.00 99.47 100.00 98.82 100.00 98.44 97.14 100.00 98.72 100.00 100.00 100.00 99.08 99.02 99.44 100.00 100.00 98.53 98.53 99.52 100.00 100.00 100.00 100.00 99.25 98.55 99.38 100.00 100.00 98.31 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA dnc,I_chrX_3150245_3150319,I_chrX_3150351_3152643 chrX + chrX_3226580_3228183 chrX_3226580_3228177 chrX_3226475_3226579;chrX_3228184_3228364 72.47 73.91 74.07 96.88 81.82 70.37 24.32 82.98 72.22 NA NA 86.49 61.90 80.77 66.67 88.57 55.56 63.33 3.12 85.07 NA NA 63.33 77.27 NA 70.00 62.96 NA NA NA 82.86 NA NA 70.83 80.95 95.24 68.18 71.43 76.19 68.42 NA 76.79 71.43 NA NA NA NA 80.00 72.86 72.73 69.23 NA NA NA 71.43 NA NA NA K intron_retention CG1622,REI_chrX_13191277_13191339,RI_chrX_13191703_13191779,I_chrX_13191916_13192167,I_chrX_13192409_13192738,EI_chrX_13192857_13192928 chrX + chrX_13191685_13191779 chrX_13191684_13191685;chrX_13191779_13191780 chrX_13191617_13191684;chrX_13191780_13191847 0.41 0.00 0.00 2.13 0.00 0.00 0.00 1.39 1.61 0.76 6.67 2.86 4.76 0.00 0.00 0.00 0.00 0.00 0.00 1.44 0.00 0.00 0.68 1.27 0.00 0.00 3.02 3.31 0.00 0.00 5.13 0.00 1.20 0.91 0.00 2.73 0.83 1.20 0.28 1.96 1.04 0.52 0.00 0.00 0.98 0.41 0.00 0.00 2.27 1.06 1.27 1.57 0.00 0.00 0.00 2.04 0.00 1.06 K intron_retention CG3114,RI_chrX_168562_168685 chrX - chrX_165647_167215 chrX_165646_165647;chrX_167215_167216 chrX_165521_165646;chrX_167216_167420 25.00 NA NA NA NA NA 25.00 29.41 39.13 NA NA 17.65 NA NA 27.78 42.86 30.77 NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 22.22 NA NA 0.00 NA 6.67 11.76 NA 39.13 NA NA NA NA NA NA 23.81 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1666133_1670219 chr2R_1666219_1670219 chr2R_1670220_1670281;chr2R_1666119_1666132 90.48 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.48 NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG1815,I_chr3R_27501104_27501167,I_chr3R_27501104_27501176 chr3R + chr3R_27501104_27501176;chr3R_27501104_27501179 chr3R_27501104_27501167 chr3R_27501004_27501103;chr3R_27501180_27501267 52.38 60.00 48.65 66.10 75.00 63.33 44.00 55.17 58.82 46.34 42.42 40.62 60.00 48.39 51.16 57.45 60.61 60.71 65.71 59.46 63.16 44.44 45.83 67.35 56.25 48.48 62.50 76.67 47.17 46.15 44.00 52.38 45.65 50.72 61.36 50.00 61.02 43.75 48.94 45.78 54.55 54.43 56.67 52.50 43.10 50.72 73.68 42.48 51.47 45.45 60.87 50.00 56.52 44.44 54.90 55.56 46.88 50.00 K intron_retention noncoding_4408 chr2R + chr2R_618251_618301 chr2R_618250_618251;chr2R_618301_618302 chr2R_618064_618250;chr2R_618302_618460 67.43 NA NA NA NA NA NA 71.43 61.90 NA NA 60.00 NA NA 66.67 71.43 NA NA NA 68.18 NA NA NA NA NA NA NA NA 92.31 NA 88.89 NA NA 58.33 NA NA NA NA NA 60.00 NA 66.67 NA 80.00 NA NA NA NA 72.22 NA 64.29 NA NA NA NA NA 72.73 52.94 K intron_retention CG3397,RI_chr3R_7818607_7818970 chr3R - chr3R_7809747_7809801 chr3R_7809746_7809747;chr3R_7809801_7809802 chr3R_7809208_7809746;chr3R_7809802_7810364 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.75 0.00 0.00 0.00 0.00 4.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor cic,RI_chr3R_16122222_16123529 chr3R + chr3R_16122222_16123529;chr3R_16122222_16122818 chr3R_16122222_16124105 chr3R_16122122_16122221;chr3R_16124106_16124254 94.87 96.46 95.88 93.51 97.59 97.59 91.53 95.03 95.54 88.89 95.89 95.87 94.81 94.87 97.74 88.61 96.67 96.83 95.29 96.44 97.98 57.86 94.74 95.31 93.97 86.32 91.26 75.70 78.87 86.00 96.88 89.58 82.11 97.10 93.75 76.55 93.14 95.00 93.62 91.77 86.27 97.26 97.37 88.39 78.05 92.22 96.61 84.81 96.24 95.00 94.70 93.06 95.12 95.65 97.58 95.08 97.73 90.67 K intron_retention Pdp1,RI_chr3L_7809841_7810536,I_chr3L_7813130_7818683,I_chr3L_7831960_7846282 chr3L - chr3L_7809826_7810536 chr3L_7809825_7809826;chr3L_7810536_7810537 chr3L_7809741_7809825;chr3L_7810537_7810636 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG7091,I_chr3R_8805200_8805246,RI_chr3R_8805541_8805680,I_chr3R_8809774_8809832 chr3R + chr3R_8805200_8805257 chr3R_8805200_8805246 chr3R_8805100_8805199;chr3R_8805258_8805346 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.35 1.37 0.00 0.00 0.00 0.00 0.00 0.00 3.85 1.16 0.00 1.82 4.17 0.00 5.56 0.00 5.71 0.00 0.00 0.00 2.17 0.00 0.00 0.00 3.12 0.00 2.63 0.00 2.13 0.00 0.00 1.14 0.00 0.00 3.23 0.00 NA 1.49 2.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.53 K alternative_donor Dscam,I_chr2R_3211474_3212074,I_chr2R_3212243_3212342,F_chr2R_3219886_3228832,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3211474_3212086 chr2R_3211474_3212074 chr2R_3211374_3211473;chr2R_3212087_3212174 0.00 0.00 0.00 0.00 NA 0.00 NA NA 3.70 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA 1.96 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 NA 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 4.00 3.45 0.00 6.25 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 K intron_retention shot,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9753632_9753953 chr2R_9753631_9753632;chr2R_9753953_9753954 chr2R_9753566_9753631;chr2R_9753954_9754137 0.71 0.00 2.44 2.27 0.00 0.00 5.62 2.86 0.62 0.00 0.00 2.49 0.00 0.00 1.04 3.53 1.12 1.00 5.26 2.25 1.23 0.47 0.00 0.00 0.00 2.11 1.84 3.12 0.97 0.79 0.00 0.00 0.00 2.55 0.72 0.00 1.11 0.00 0.00 1.42 0.00 0.29 2.74 1.25 0.82 0.00 1.00 0.62 0.00 0.71 0.84 0.00 1.43 0.00 0.00 0.00 1.08 0.00 K intron_retention CG5285,CG5292 chr3R + chr3R_12976690_12976750 chr3R_12976689_12976690;chr3R_12976750_12976751 chr3R_12976320_12976689;chr3R_12976751_12977415 0.00 NA 0.00 0.00 NA NA 0.00 7.41 6.67 NA NA 0.00 NA NA NA NA NA NA NA 6.67 NA NA NA NA NA 0.00 NA NA 0.00 NA 22.22 NA 0.00 0.00 NA NA NA NA 0.00 NA NA 7.41 NA NA NA 5.26 NA NA 5.00 NA NA NA NA NA 0.00 14.29 NA 0.00 K multi_cassette Xrp1,I_chr3R_14741648_14750799,I_chr3R_14750298_14750799 chr3R + chr3R_14741648_14750799 chr3R_14741648_14745144;chr3R_14745235_14746134;chr3R_14747042_14750799 chr3R_14745145_14745234;chr3R_14746135_14747041 chr3R_14741548_14741647;chr3R_14750800_14750899 98.55 98.31 98.21 96.75 97.62 100.00 83.62 98.90 97.37 98.04 93.48 98.97 100.00 97.96 100.00 98.68 100.00 100.00 98.36 98.02 100.00 99.53 98.65 99.09 96.74 95.24 97.64 96.77 80.56 98.85 99.59 100.00 99.29 98.94 98.63 95.56 100.00 98.59 100.00 99.21 93.18 97.25 100.00 99.10 96.72 94.57 98.55 98.68 98.89 96.30 98.23 97.14 100.00 98.28 98.46 100.00 98.53 98.04 K jcn_only_AD CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8163458_8173015 chr2L_8163519_8173015 chr2L_8173016_8173209;chr2L_8163297_8163457 100.00 98.77 100.00 98.87 95.31 100.00 98.25 99.58 100.00 100.00 98.92 99.19 100.00 100.00 98.44 99.49 100.00 100.00 98.77 98.91 99.09 96.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 99.57 98.81 100.00 98.68 100.00 98.90 100.00 100.00 100.00 100.00 100.00 NA 100.00 97.56 100.00 98.62 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 NA K alternative_donor CG17928 chr2L + chr2L_16792145_16792369 chr2L_16792274_16792369 chr2L_16792370_16792752;chr2L_16791943_16792144 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K intron_retention sta chrX - chrX_1376892_1376948 chrX_1376891_1376892;chrX_1376948_1376949 chrX_1376851_1376891;chrX_1376949_1376950 99.98 99.99 99.98 100.00 99.98 99.98 99.98 99.98 99.99 100.00 99.98 99.98 99.97 100.00 99.98 99.98 99.94 100.00 99.98 99.99 99.98 99.96 99.97 99.98 100.00 99.98 99.99 99.98 99.97 99.98 99.89 99.98 99.98 99.98 99.98 99.98 99.92 99.93 99.96 99.97 99.99 99.99 99.97 99.96 99.99 99.99 99.99 100.00 100.00 99.93 99.99 99.97 99.99 99.99 99.97 99.97 99.99 99.98 N intron_retention Rho1,I_chr2R_11990455_11992537,RI_chr2R_11991687_11992537 chr2R + chr2R_11991280_11992280 chr2R_11991279_11991280;chr2R_11992280_11992281 chr2R_11991116_11991279;chr2R_11992281_11992329 52.50 NA NA 33.33 NA NA NA NA NA NA NA 56.52 NA NA NA NA NA NA NA NA NA 48.48 NA NA NA 43.75 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG6686 chr2L - chr2L_11984663_11984724 chr2L_11984662_11984663;chr2L_11984724_11984725 chr2L_11984327_11984662;chr2L_11984725_11984950 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RhoGEF3,I_chr3L_298140_298220 chr3L + chr3L_298140_298958 chr3L_298139_298140;chr3L_298958_298959 chr3L_298040_298139;chr3L_298959_299016 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 22.22 NA NA NA 5.17 NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor rl,I_chr2RHet_199154_207044,RI_chr2RHet_203476_203577,RI_chr2RHet_203592_207044,I_chr2RHet_232696_247338,RI_chr2RHet_240197_247338 chr2RHet + chr2RHet_198760_198964 chr2RHet_198817_198964 chr2RHet_198965_199153;chr2RHet_198753_198759 50.00 NA NA 50.00 NA NA 55.56 43.75 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 55.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA K intron_retention phtf,I_chr2R_2629598_2630209 chr2R + chr2R_2631050_2631097 chr2R_2631049_2631050;chr2R_2631097_2631098 chr2R_2630542_2631049;chr2R_2631098_2632041 0.00 0.00 NA 4.35 0.00 NA 0.00 3.45 0.00 0.00 NA 3.03 12.50 0.00 9.09 5.26 NA 5.56 6.67 0.00 5.56 0.00 0.00 3.45 0.00 NA 12.00 7.14 NA 0.00 0.00 NA 0.00 6.67 NA 0.00 2.13 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA 3.23 6.06 0.00 0.00 6.25 NA NA 4.35 0.00 0.00 0.00 K alternative_acceptor Gmer chr2R - chr2R_18775312_18775372 chr2R_18775317_18775372 chr2R_18775373_18775930;chr2R_18775095_18775311 100.00 NA NA 100.00 NA 100.00 NA 100.00 92.31 NA NA 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA NA 90.00 NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA NA 100.00 100.00 100.00 91.67 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 K intron_retention cv-2 chr2R - chr2R_17251293_17254167 chr2R_17251292_17251293;chr2R_17254167_17254168 chr2R_17251204_17251292;chr2R_17254168_17254445 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 15.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA K intron_retention CG3860,RI_chr2R_19882285_19882350 chr2R - chr2R_19882430_19882498 chr2R_19882429_19882430;chr2R_19882498_19882499 chr2R_19882351_19882429;chr2R_19882499_19882557 100.00 100.00 94.44 96.15 100.00 100.00 100.00 96.15 100.00 NA 91.67 100.00 100.00 92.31 100.00 92.86 100.00 100.00 95.00 97.06 100.00 100.00 100.00 90.91 100.00 100.00 94.44 NA NA 100.00 96.67 NA NA 100.00 91.67 100.00 91.67 100.00 100.00 100.00 NA 96.30 100.00 100.00 NA 100.00 100.00 100.00 94.44 92.86 100.00 90.91 100.00 100.00 95.00 100.00 100.00 100.00 K intron_retention CG31678 chr2L - chr2L_20675571_20675636 chr2L_20675570_20675571;chr2L_20675636_20675637 chr2L_20674995_20675570;chr2L_20675637_20676010 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.71 0.00 0.00 0.00 0.00 0.00 0.00 12.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Chc,RI_chrX_15728405_15729273,I_chrX_15728405_15729401,I_chrX_15728946_15729357 chrX - chrX_15728405_15729370;chrX_15728405_15729476;chrX_15728405_15729357;chrX_15728405_15729319 chrX_15728405_15729260 chrX_15728305_15728404;chrX_15729477_15729501 0.60 0.00 0.00 0.89 3.45 2.08 1.46 0.62 1.27 0.00 0.00 1.54 1.27 1.30 0.00 0.60 0.00 4.35 1.08 1.57 0.00 2.00 0.00 2.44 0.00 1.64 0.00 0.00 4.17 2.94 1.11 0.00 0.00 1.95 2.22 0.00 0.00 0.00 0.00 1.61 0.00 0.72 1.41 0.00 0.00 4.35 0.00 0.00 0.62 5.26 2.04 0.00 0.00 0.00 0.00 0.00 4.35 0.00 K intron_retention CG31601 chr2L - chr2L_22043194_22043246 chr2L_22043193_22043194;chr2L_22043246_22043247 chr2L_22043102_22043193;chr2L_22043247_22043283 8.01 13.64 7.69 1.41 7.14 6.25 12.20 13.04 8.33 NA 6.90 9.26 4.65 7.50 9.26 4.05 0.00 13.33 8.62 5.08 18.75 NA 15.38 0.00 19.05 28.00 19.35 NA 33.33 0.00 10.00 NA 6.45 9.72 21.74 41.18 0.00 NA NA 0.00 23.53 2.99 6.52 3.85 25.00 0.00 0.00 8.33 10.14 0.00 0.00 NA NA NA 10.91 7.14 11.76 0.00 K alternative_acceptor l(3)neo18 chr3L - chr3L_12131045_12131115 chr3L_12131064_12131115 chr3L_12131116_12131345;chr3L_12130938_12131044 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.45 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.26 0.00 N jcn_only_AA noncoding_14363 chr3LHet - chr3LHet_709113_709194;chr3LHet_709127_709194 chr3LHet_709103_709194 chr3LHet_709195_709261;chr3LHet_709044_709102 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.50 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 K alternative_donor CG10681 chr3L + chr3L_12494819_12494874 chr3L_12494823_12494874 chr3L_12494875_12495047;chr3L_12494613_12494818 5.16 NA NA 4.76 NA NA 5.56 7.14 NA NA NA 0.00 NA NA NA 10.53 NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA 10.53 NA NA NA NA NA 6.25 NA 0.00 NA NA NA NA NA NA 4.76 0.00 0.00 NA NA NA NA NA NA NA K intron_retention CG1116 chr3R + chr3R_1045578_1045637 chr3R_1045577_1045578;chr3R_1045637_1045638 chr3R_1045416_1045577;chr3R_1045638_1045855 16.03 NA NA NA NA NA NA 14.29 NA NA NA 18.52 NA NA NA NA NA NA NA 18.75 NA NA 50.00 14.29 NA NA 37.50 NA NA 41.67 53.85 NA 9.52 NA NA 0.00 NA NA 18.18 16.67 NA 15.38 NA NA NA 21.43 20.00 NA 11.76 13.33 10.53 NA 7.69 9.09 NA 22.22 12.50 NA K jcn_only_AA CG14425,Sxl,CG14425_Sxl,CEF_chrX_6984538_6992033 chrX - chrX_6990969_6991030;chrX_6986204_6991030 chrX_6986156_6991030 chrX_6991031_6991040 26.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA NA NA NA NA 37.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20336405_20336466;chr2L_20336405_20336463 chr2L_20336405_20336469 chr2L_20336338_20336404;chr2L_20336470_20336529 6.70 11.96 4.76 8.73 1.39 4.26 4.61 5.59 6.85 5.56 4.88 4.88 7.04 4.17 8.16 6.67 6.82 8.42 8.57 3.91 8.82 7.95 8.50 4.62 2.90 7.53 5.93 11.18 6.75 4.51 7.30 9.86 10.68 7.88 8.91 4.90 6.57 7.87 6.99 5.67 8.70 6.70 5.00 7.48 3.36 4.14 5.66 7.30 6.86 4.67 4.72 5.00 1.39 3.03 8.27 6.80 6.72 4.85 K alternative_acceptor Vha16,I_chr2R_2519645_2520499,RI_chr2R_2519646_2519840,I_chr2R_2519646_2520292,I_chr2R_2519646_2520298,I_chr2R_2519775_2520499 chr2R - chr2R_2519646_2520499 chr2R_2519775_2520499 chr2R_2520500_2520599;chr2R_2519546_2519645 14.06 14.51 14.12 16.19 12.82 12.39 26.60 19.82 16.18 8.70 15.32 17.80 18.21 15.64 14.13 14.31 16.51 15.67 17.83 17.58 14.06 11.64 13.24 11.21 20.48 27.25 17.69 12.90 22.86 9.96 12.11 8.81 13.45 18.18 17.95 27.75 8.65 9.20 10.48 13.51 16.87 12.80 13.96 8.29 9.89 8.47 10.00 8.62 13.32 12.28 14.50 12.36 12.75 16.67 14.29 11.05 14.29 8.09 K intron_retention CG18081 chr3L - chr3L_15827552_15827833 chr3L_15827551_15827552;chr3L_15827833_15827834 chr3L_15827181_15827551;chr3L_15827834_15827979 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention fog,I_chrX_22231114_22234174,I_chrX_22231114_22237956,I_chrX_22231114_22238023,I_chrX_22246738_22255641,RE_chrX_22256169_22256990 chrX - chrX_22231114_22246594 chrX_22231113_22231114;chrX_22246594_22246595 chrX_22231014_22231113;chrX_22246595_22246737 0.00 0.00 0.00 4.76 0.00 0.00 8.33 0.00 1.75 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 2.94 NA 0.00 0.00 0.00 0.00 0.00 NA 1.85 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention CG7824 chr3R - chr3R_25684441_25684496 chr3R_25684440_25684441;chr3R_25684496_25684497 chr3R_25683370_25684440;chr3R_25684497_25684659 0.00 0.00 0.00 20.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 3.70 2.13 0.00 0.00 3.70 2.99 0.00 2.27 0.00 0.00 4.76 0.00 18.75 26.32 4.17 0.00 6.67 0.00 0.00 0.00 4.17 7.41 6.67 3.85 0.00 0.00 6.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 3.85 8.33 0.00 0.00 2.50 0.00 K alternative_acceptor hppy,I_chr2R_15066378_15066915,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15066378_15066915;chr2R_15066378_15067003 chr2R_15066378_15066881 chr2R_15066360_15066377;chr2R_15067004_15067015 29.41 36.84 33.33 40.00 25.00 26.67 55.17 60.00 45.24 50.00 25.00 37.50 50.00 28.57 26.67 25.00 29.41 25.00 23.81 25.71 42.86 15.91 27.59 40.00 33.33 30.77 47.37 16.67 12.50 38.10 13.33 NA 30.77 47.83 33.33 29.41 31.58 15.79 11.11 17.50 30.00 43.48 30.00 14.55 33.33 13.33 17.65 6.90 28.21 40.00 31.25 27.78 15.38 NA 31.58 16.67 NA 16.67 K intron_retention Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629527_2629913 chr3L_2629526_2629527;chr3L_2629913_2629914 chr3L_2629427_2629526;chr3L_2629914_2629921 19.16 21.08 18.75 29.46 26.23 19.71 30.92 16.74 29.96 37.04 44.51 21.88 30.27 18.92 15.94 21.18 25.35 14.84 20.83 17.31 23.79 14.29 16.61 23.91 23.81 16.79 27.62 25.58 17.95 14.29 16.67 20.47 19.33 22.20 12.86 24.43 21.65 18.30 17.50 15.31 18.58 20.33 19.16 19.12 8.82 10.67 13.28 15.75 17.85 25.22 17.25 24.32 12.05 13.51 20.37 19.39 14.81 9.43 K intron_retention CG40263,F_chr2RHet_1265687_1293040,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1333469_1335106 chr2RHet_1333468_1333469;chr2RHet_1335106_1335107 chr2RHet_1333290_1333468;chr2RHet_1335107_1335154 61.11 NA NA NA NA NA NA NA NA NA 61.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K mutually_exclusive I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499338_1499771,chr3L_1499880_1501798;chr3L_1499338_1501345,chr3L_1501407_1501798 chr3L_1499338_1500244,chr3L_1500389_1501798 chr3L_1499772_1499879;chr3L_1501346_1501406 chr3L_1500245_1500388 chr3L_1499043_1499337;chr3L_1501799_1501892 67.95 NA 60.00 70.00 NA NA NA 75.00 64.29 100.00 40.00 76.92 NA NA 75.00 66.67 NA NA 75.00 58.33 NA 100.00 50.00 80.00 50.00 71.43 85.71 58.33 NA NA 78.26 NA 40.00 80.00 57.14 88.89 NA 60.00 NA 40.00 66.67 69.23 NA 75.00 100.00 60.00 NA 40.00 63.64 57.14 50.00 80.00 NA 80.00 62.50 50.00 75.00 80.00 K jcn_only_AA oho23B,I_chr2L_2856176_2856244,I_chr2L_2856573_2856630,RI_chr2L_2856673_2856772 chr2L + chr2L_2856176_2856218;chr2L_2856176_2856222 chr2L_2856176_2856246 chr2L_2856076_2856175;chr2L_2856247_2856287 99.92 99.85 99.90 99.85 99.97 99.98 99.94 99.81 99.94 99.96 99.92 99.95 99.81 99.95 99.82 99.91 99.88 99.89 99.89 99.95 99.88 99.82 99.94 99.93 99.78 99.92 99.94 99.89 99.96 99.95 99.84 100.00 100.00 99.83 100.00 99.92 99.91 99.90 99.90 100.00 99.96 99.92 99.82 99.90 99.93 99.92 99.82 99.97 99.97 99.90 99.84 99.95 99.96 99.71 99.91 99.86 99.89 99.95 K intron_retention CG3056 chrX + chrX_1267081_1267177 chrX_1267080_1267081;chrX_1267177_1267178 chrX_1266494_1267080;chrX_1267178_1268716 96.15 95.83 100.00 100.00 100.00 100.00 96.55 100.00 100.00 93.33 94.12 94.34 93.75 100.00 96.00 100.00 95.00 95.00 95.83 97.62 88.24 96.67 96.88 96.43 83.33 85.00 100.00 95.24 90.91 87.10 96.00 100.00 92.16 97.73 93.10 89.29 92.31 95.45 96.43 97.22 100.00 97.37 100.00 95.24 89.66 92.31 95.45 97.06 97.14 100.00 100.00 100.00 93.33 94.74 96.15 100.00 100.00 87.50 K alternative_donor EI_chr2L_13164741_13164824,Sfmbt chr2L - chr2L_13170785_13171381 chr2L_13170785_13171312 chr2L_13169657_13170784;chr2L_13171382_13171665 34.21 33.33 25.71 39.62 35.48 18.75 36.17 42.31 38.46 13.51 40.91 30.51 25.00 41.38 30.56 36.36 30.77 27.27 53.33 37.04 36.67 5.26 35.00 37.29 22.86 31.03 34.48 16.28 28.89 30.23 34.62 31.25 37.70 36.17 22.58 34.21 34.44 42.50 28.81 45.45 26.32 27.78 22.58 35.71 26.42 34.62 48.39 20.69 33.33 31.25 31.48 34.29 39.02 35.29 25.58 33.33 52.27 35.71 K cassette CG34394,I_chr2L_3365674_3365965 chr2L - chr2L_3361444_3362998 chr2L_3361444_3362415;chr2L_3362719_3362998 chr2L_3362416_3362718 chr2L_3360996_3361443;chr2L_3362999_3363195 23.81 25.00 22.22 43.33 19.05 23.81 32.35 46.88 41.67 16.28 26.32 34.55 33.33 35.00 28.57 52.00 22.22 23.08 35.00 28.85 27.27 34.29 25.64 16.22 21.88 44.00 27.27 34.55 19.54 26.67 21.88 13.79 28.77 30.30 17.95 28.57 24.59 17.14 36.96 25.93 16.67 20.69 26.32 21.62 35.29 17.14 15.00 13.45 20.37 10.34 10.00 21.74 16.67 14.29 20.00 18.18 20.00 13.79 K alternative_donor bun,I_chr2L_12520177_12536274,I_chr2L_12537393_12537634,RI_chr2L_12540901_12546409 chr2L - chr2L_12539487_12540515 chr2L_12539487_12540476 chr2L_12537746_12539486;chr2L_12540516_12540692 100.00 92.31 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 95.24 100.00 93.33 100.00 100.00 97.78 92.86 88.89 96.00 100.00 100.00 100.00 94.74 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 90.91 95.45 92.31 NA 94.59 100.00 100.00 NA NA 88.89 100.00 93.33 85.71 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 K alternative_acceptor SWAP,RI_chrX_936466_936762,I_chrX_936466_936835,RI_chrX_936919_937245,RI_chrX_938935_938985,I_chrX_941459_982652 chrX + chrX_936466_936762;chrX_936466_936966 chrX_936466_936835 chrX_936366_936465;chrX_936967_937018 18.75 0.00 16.67 13.33 16.67 14.29 23.53 25.00 9.09 33.33 NA 21.43 14.29 28.57 25.00 NA 25.00 33.33 20.00 13.33 NA 25.00 28.57 33.33 NA NA 12.50 NA 22.22 40.00 9.09 0.00 14.29 35.71 16.67 NA 50.00 0.00 0.00 18.75 77.78 16.67 NA 16.67 0.00 22.22 0.00 16.67 27.78 9.09 23.08 0.00 0.00 25.00 30.00 28.57 0.00 33.33 K intron_retention CG2076 chrX + chrX_10985226_10985323 chrX_10985225_10985226;chrX_10985323_10985324 chrX_10985084_10985225;chrX_10985324_10985660 0.00 0.00 2.15 1.32 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 3.51 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.48 0.00 2.20 2.20 3.56 0.00 0.80 0.00 0.99 0.73 0.00 0.91 0.97 0.00 0.52 1.77 1.46 0.00 0.00 0.58 0.00 0.46 0.35 0.00 0.00 0.32 1.06 0.00 0.67 1.07 0.00 0.00 0.00 0.00 K multi_cassette plexA,RI_chr4_1036247_1047588,RI_chr4_1040642_1047395,RI_chr4_1044307_1046841,RF_chr4_1044307_1047399 chr4 - chr4_1036247_1047588 chr4_1036247_1037001;chr4_1039336_1039395;chr4_1040642_1042867;chr4_1044307_1047588 chr4_1037002_1039335;chr4_1039396_1040641;chr4_1042868_1044306 chr4_1036147_1036246;chr4_1047589_1047625 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette nuf,I_chr3L_14224426_14225035,I_chr3L_14224736_14225035 chr3L + chr3L_14224426_14225026 chr3L_14224426_14224696;chr3L_14224736_14225026 chr3L_14224697_14224735 chr3L_14224399_14224425;chr3L_14225027_14225383 36.36 NA NA NA NA NA NA 36.36 25.00 NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor lwr,RI_chr2L_542347_542429 chr2L - chr2L_542347_542429;chr2L_542380_542429 chr2L_542351_542429 chr2L_542430_542529;chr2L_542247_542346 93.89 93.83 96.92 91.01 95.65 95.16 92.31 94.38 93.07 95.08 98.15 92.25 89.09 96.55 94.67 88.89 93.33 94.52 97.06 92.68 98.18 92.50 92.31 95.96 100.00 92.94 97.18 92.96 90.77 97.22 95.40 90.41 95.12 92.93 94.29 90.32 93.33 95.83 91.21 93.33 96.83 92.19 94.23 98.68 91.26 90.00 95.29 96.81 93.89 92.31 90.91 94.92 98.73 96.70 90.24 95.28 90.54 92.44 K intron_retention Ppcs chr3R - chr3R_14967996_14971202 chr3R_14967995_14967996;chr3R_14971202_14971203 chr3R_14967810_14967995;chr3R_14971203_14971646 0.00 0.00 NA 6.67 NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 7.69 NA NA NA NA 0.00 NA 4.35 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 K multi_cassette CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8174699_8176572 chr2L_8174699_8175175;chr2L_8175398_8175994;chr2L_8176052_8176572 chr2L_8175176_8175397;chr2L_8175995_8176051 chr2L_8174536_8174698;chr2L_8176573_8176806 6.50 4.81 7.94 14.41 3.85 3.74 4.58 8.57 4.72 12.50 8.05 5.67 5.75 10.84 4.58 7.94 19.67 10.14 4.88 6.91 7.06 6.47 7.22 10.07 5.66 7.69 5.48 13.24 6.17 7.69 4.20 8.00 9.78 8.61 4.08 6.50 8.04 5.22 5.22 7.30 12.12 5.85 8.22 8.47 2.27 4.35 6.76 7.14 5.50 10.00 4.10 3.12 4.76 4.76 6.67 3.45 5.13 4.76 K intron_retention Hsf,I_chr2R_14018415_14018474,RI_chr2R_14021578_14021911,RI_chr2R_14021614_14021911 chr2R - chr2R_14021614_14021911 chr2R_14021613_14021614;chr2R_14021911_14021912 chr2R_14021514_14021613;chr2R_14021912_14022011 90.45 NA NA NA NA NA 92.31 100.00 94.12 NA NA 90.00 NA NA 90.91 100.00 NA NA 83.33 90.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 92.86 NA NA NA NA NA NA NA 69.23 87.50 NA NA NA NA NA 81.25 NA NA NA NA NA 66.67 NA NA NA K intron_retention Pvr,I_chr2L_8226604_8228082,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8226604_8228082 chr2L_8226603_8226604;chr2L_8228082_8228083 chr2L_8226504_8226603;chr2L_8228083_8228182 76.47 NA 68.75 56.00 60.00 83.33 55.56 68.42 55.56 NA NA 75.86 76.47 76.47 77.78 70.59 56.25 90.00 76.47 71.43 NA NA 81.82 80.00 NA 70.00 92.86 NA NA 88.89 NA NA NA 69.23 NA 87.50 81.25 NA 60.00 77.78 NA 86.36 NA 63.64 NA NA NA 87.50 76.67 NA 88.89 NA NA NA 57.89 NA NA NA K intron_retention CG11242,Oseg6 chr2R - chr2R_15374046_15374097 chr2R_15374045_15374046;chr2R_15374097_15374098 chr2R_15373674_15374045;chr2R_15374098_15374290 4.62 1.72 5.31 6.62 3.80 2.97 3.23 5.67 4.31 0.00 5.68 6.79 4.62 8.86 5.88 7.50 8.24 1.83 5.61 3.40 2.33 6.98 3.57 4.39 2.50 3.33 8.94 9.09 6.25 4.69 3.54 6.90 12.20 6.08 5.06 3.66 5.88 4.40 0.86 2.46 0.00 4.47 3.61 4.17 3.66 2.52 4.00 4.76 5.32 6.19 7.63 2.27 5.80 5.22 6.67 5.22 3.39 3.85 K intron_retention CG2316,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_210055,I_chr4_209875_210628,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_211303,RI_chr4_210688_211927,I_chr4_210688_213991,I_chr4_210688_214019,I_chr4_210688_214049,RI_chr4_210688_214450 chr4 - chr4_209875_214298 chr4_209874_209875;chr4_214298_214299 chr4_209775_209874;chr4_214299_214311 18.75 NA NA 18.75 NA NA 25.00 15.38 28.57 NA NA 26.32 NA NA NA 9.09 NA NA 30.77 11.11 NA NA NA NA NA NA NA NA NA NA NA NA NA 12.00 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA K intron_retention slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,RI_chr2R_20289332_20289739,I_chr2R_20289332_20289846,I_chr2R_20289332_20290093 chr2R - chr2R_20289332_20289739 chr2R_20289331_20289332;chr2R_20289739_20289740 chr2R_20289232_20289331;chr2R_20289740_20289839 97.33 100.00 97.50 93.15 94.44 100.00 98.39 98.81 94.81 100.00 95.83 98.65 95.65 97.92 97.56 96.30 97.30 97.37 92.45 97.33 96.55 96.15 94.74 96.30 100.00 97.50 100.00 100.00 97.06 95.83 97.37 100.00 96.00 96.30 100.00 100.00 94.74 100.00 96.88 96.08 100.00 95.00 100.00 95.65 90.91 91.67 100.00 95.83 98.81 100.00 97.87 100.00 93.33 100.00 96.15 93.75 100.00 96.43 K alternative_donor Tak1,I_chrX_20388150_20389255 chrX - chrX_20388150_20392250;chrX_20388150_20389255 chrX_20388150_20388725 chrX_20388050_20388149;chrX_20392251_20392299 18.00 12.50 17.86 11.36 12.96 19.23 19.78 19.23 15.43 17.31 20.69 13.01 22.45 18.00 18.87 25.00 15.69 18.31 20.97 15.62 15.28 18.25 13.92 13.95 18.00 20.75 13.79 28.17 18.87 16.67 19.72 21.05 13.93 18.18 16.67 20.31 7.24 10.34 10.83 20.95 25.42 16.41 15.00 18.06 14.29 27.16 19.48 33.33 16.81 17.24 20.55 17.78 17.78 12.24 18.06 12.20 18.37 26.58 K intron_retention RpL23,E_chr2R_18742271_18742349,E_chr2R_18742308_18742967 chr2R + chr2R_18742382_18742967 chr2R_18742381_18742382;chr2R_18742967_18742968 chr2R_18742355_18742381;chr2R_18742968_18743038 0.00 0.01 0.00 0.03 0.00 0.04 0.00 0.00 0.05 0.00 0.00 0.02 0.03 0.00 0.02 0.00 0.00 0.00 0.02 0.03 0.00 0.00 0.00 0.03 0.00 0.00 0.13 0.15 0.04 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.04 0.00 0.02 0.00 K intron_retention RI_chr3L_707623_707678,CkIIalpha-i3,CG13896,RI_chr3L_711692_711744 chr3L - chr3L_711688_711744 chr3L_711687_711688;chr3L_711744_711745 chr3L_711592_711687;chr3L_711745_711774 56.70 NA NA 50.00 NA NA 47.37 36.84 64.00 NA NA NA 63.64 53.85 NA 65.00 60.00 56.25 65.00 82.14 NA 70.00 NA NA NA NA NA NA NA NA 46.67 NA NA 57.14 NA NA NA NA NA NA NA 58.82 NA NA NA NA NA NA 52.00 NA NA NA NA NA 50.00 NA NA 46.15 K intron_retention CG32529 chrX + chrX_19766478_19794648 chrX_19766477_19766478;chrX_19794648_19794649 chrX_19766320_19766477;chrX_19794649_19795521 41.88 NA NA NA NA NA NA NA 40.91 NA NA NA NA NA NA NA NA NA NA 69.23 NA 5.00 NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA K intron_retention I_chr2R_7165832_7165906,CG9062,I_chr2R_7171366_7171418 chr2R - chr2R_7168656_7168778 chr2R_7168655_7168656;chr2R_7168778_7168779 chr2R_7167919_7168655;chr2R_7168779_7168884 82.61 80.95 84.00 89.47 85.00 66.67 100.00 83.72 85.71 75.00 76.47 81.08 91.30 95.45 85.71 84.62 93.33 91.67 84.62 83.82 71.43 82.61 78.79 84.00 81.25 91.30 73.91 78.95 84.62 61.29 84.00 84.00 78.95 83.72 78.26 95.45 75.86 76.00 89.47 80.00 76.67 77.08 82.35 90.32 83.78 71.74 52.63 81.08 83.33 66.67 61.76 86.67 94.44 70.83 83.33 78.26 75.86 72.34 K jcn_only_AA CG5830,I_chr3L_15992339_15996998,I_chr3L_15996923_15996998 chr3L - chr3L_15988946_15996998 chr3L_15996923_15996998 chr3L_15996999_15997098;chr3L_15988710_15988945 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 1.05 10.00 0.00 6.25 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 3.85 0.00 0.00 0.00 3.45 3.45 1.67 NA 4.35 1.43 0.00 0.00 0.00 2.13 0.00 0.00 0.00 1.45 3.57 3.77 NA 5.00 6.67 0.00 3.33 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 K intron_retention Su(dx),RE_chr2L_2038009_2039919,CG31672 chr2L + chr2L_2042570_2042652 chr2L_2042569_2042570;chr2L_2042652_2042653 chr2L_2041647_2042569;chr2L_2042653_2042851 0.00 0.00 0.00 2.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention gro chr3R + chr3R_21870349_21871190 chr3R_21870348_21870349;chr3R_21871190_21871191 chr3R_21870166_21870348;chr3R_21871191_21871385 0.00 0.00 0.00 0.00 0.00 0.00 2.02 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.48 0.60 1.26 0.00 2.04 1.57 0.00 0.00 1.43 0.00 0.00 0.00 0.62 0.00 1.94 0.00 0.00 0.87 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG13771 chr2L - chr2L_6663068_6663123;chr2L_6663068_6663131 chr2L_6663068_6663127 chr2L_6662854_6663067;chr2L_6663132_6663374 26.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.00 NA NA 35.48 NA NA NA NA NA 22.22 NA 20.00 NA NA NA NA NA NA NA NA NA NA K intron_retention Tango9,RI_chr3R_7800180_7800239 chr3R - chr3R_7800180_7800267 chr3R_7800179_7800180;chr3R_7800267_7800268 chr3R_7800080_7800179;chr3R_7800268_7800339 0.00 5.00 0.00 0.00 0.00 0.00 0.00 2.78 2.13 NA 0.00 0.00 0.00 0.00 4.17 0.00 NA 8.70 0.00 10.53 0.00 5.88 0.00 0.00 0.00 5.56 5.56 0.00 NA NA 3.45 NA NA 6.67 NA NA 3.23 0.00 0.00 0.00 NA 4.44 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 4.35 4.76 0.00 NA K alternative_donor CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27044867;chr3R_27044771_27045188;chr3R_27044771_27045257;chr3R_27044771_27045132;chr3R_27044771_27045027;chr3R_27044771_27044831;chr3R_27044771_27044990;chr3R_27044771_27044895 chr3R_27044771_27045110 chr3R_27044671_27044770;chr3R_27045258_27045273 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention lgs,RI_chr4_463390_463489 chr4 - chr4_458669_458754 chr4_458668_458669;chr4_458754_458755 chr4_458281_458668;chr4_458755_459544 100.00 100.00 96.67 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 98.04 100.00 96.97 100.00 100.00 100.00 100.00 100.00 98.75 96.43 100.00 97.78 100.00 100.00 97.22 100.00 100.00 97.22 100.00 100.00 100.00 97.67 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 98.00 96.77 97.30 96.43 100.00 100.00 100.00 100.00 100.00 100.00 95.65 97.67 96.97 97.14 100.00 K intron_retention CG5746 chr3R - chr3R_20173317_20173385 chr3R_20173316_20173317;chr3R_20173385_20173386 chr3R_20173127_20173316;chr3R_20173386_20173784 79.25 76.47 82.35 94.81 81.97 80.77 81.08 85.71 78.63 79.17 88.52 83.33 78.72 85.11 83.33 74.36 78.57 73.61 79.25 83.02 83.05 91.06 85.71 77.68 91.03 84.51 94.79 81.72 70.16 73.94 77.36 73.20 75.59 76.81 83.15 84.04 75.77 74.81 79.35 65.67 80.21 81.40 84.09 68.93 63.43 73.02 76.92 63.79 71.31 81.48 75.96 82.35 68.87 80.26 81.82 72.28 75.00 66.49 K jcn_only_AA LanB1,RI_chr2L_7820401_7820448,RI_chr2L_7820405_7820461 chr2L + chr2L_7820401_7820461 chr2L_7820401_7820448 chr2L_7820305_7820400;chr2L_7820462_7820548 1.36 1.46 1.42 1.97 1.77 1.29 1.16 1.83 1.15 1.07 1.54 0.93 1.55 0.98 1.36 1.91 1.52 1.59 1.75 1.80 1.83 0.92 1.04 1.10 1.95 1.15 0.43 1.23 0.75 2.57 0.45 1.58 0.93 0.45 1.16 1.24 0.82 1.31 1.62 0.72 2.50 1.13 1.01 1.06 1.90 1.97 1.65 0.61 1.58 1.67 1.32 1.23 1.10 1.72 1.86 1.43 1.80 1.84 N jcn_only_AD Not1,I_chr2R_5463624_5463682 chr2R - chr2R_5455592_5455673;chr2R_5455592_5456522 chr2R_5455592_5456067 chr2R_5455002_5455591;chr2R_5456523_5457661 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.10 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.51 100.00 100.00 100.00 100.00 100.00 100.00 96.71 96.10 100.00 100.00 100.00 100.00 93.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention skd chr3L - chr3L_20995027_20995116 chr3L_20995026_20995027;chr3L_20995116_20995117 chr3L_20994443_20995026;chr3L_20995117_20995297 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 2.70 0.00 NA 0.00 NA NA NA NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 10.26 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA K intron_retention CG3529,CG32038,CG3552 chr3L + chr3L_9445271_9445397 chr3L_9445270_9445271;chr3L_9445397_9445398 chr3L_9445258_9445270;chr3L_9445398_9446075 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.45 0.00 0.00 3.03 0.00 7.55 11.11 3.45 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2364640;chr2L_2361586_2364480;chr2L_2361586_2365060;chr2L_2361586_2364302;chr2L_2361586_2364594;chr2L_2361586_2364312;chr2L_2361586_2364889 chr2L_2361586_2364836 chr2L_2361486_2361585;chr2L_2365061_2365065 0.00 0.00 0.00 1.41 0.00 0.00 1.59 1.25 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Mapmodulin,I_chr2R_13756314_13756411,RI_chr2R_13756314_13756450,I_chr2R_13756314_13756571 chr2R - chr2R_13756314_13758833 chr2R_13756314_13756571 chr2R_13756214_13756313;chr2R_13758834_13759000 11.70 11.70 12.79 9.02 11.54 11.49 10.13 7.31 10.57 8.00 14.77 7.21 13.40 11.70 11.43 7.25 10.42 19.71 10.66 8.28 8.41 18.99 10.66 12.17 14.49 12.22 13.91 16.90 22.50 11.90 13.33 17.33 10.65 7.42 11.76 12.00 11.24 10.71 12.63 10.88 13.68 9.17 9.88 22.83 20.69 13.67 14.89 10.14 8.20 18.06 11.48 10.99 21.33 15.07 9.03 15.73 25.41 17.74 K jcn_only_AD GlcAT-P,I_chr3L_11172482_11172633 chr3L - chr3L_11172482_11172633 chr3L_11172482_11172629 chr3L_11172382_11172481;chr3L_11172634_11172733 99.22 97.54 97.81 100.00 98.48 100.00 97.12 100.00 100.00 100.00 98.80 100.00 100.00 100.00 99.50 100.00 100.00 100.00 100.00 99.37 99.32 99.12 98.25 98.46 100.00 99.27 99.15 99.04 100.00 97.37 96.50 97.56 98.66 100.00 98.65 100.00 99.54 99.29 98.75 98.32 100.00 99.35 99.22 98.86 98.55 100.00 98.44 99.34 99.04 100.00 98.41 98.55 98.31 96.88 98.86 99.01 98.67 99.34 K intron_retention iPLA2-VIA chr3L - chr3L_9856717_9857106 chr3L_9856716_9856717;chr3L_9857106_9857107 chr3L_9856421_9856716;chr3L_9857107_9857199 96.88 NA NA 70.00 NA NA 100.00 NA 92.86 NA NA 81.82 NA NA NA 100.00 NA NA 100.00 90.00 NA 100.00 NA NA NA NA 91.67 NA 93.75 NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA 92.31 90.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19548057_19552816 chr2R_19548056_19548057;chr2R_19552816_19552817 chr2R_19548042_19548056;chr2R_19552817_19553410 25.00 21.88 27.50 24.62 28.57 24.14 20.37 26.92 26.83 NA 48.00 35.29 13.79 21.21 33.33 33.33 16.67 35.29 23.08 27.03 26.67 42.11 18.92 20.00 31.03 19.51 30.77 50.00 48.48 29.41 25.53 10.53 30.56 24.29 29.63 15.00 20.00 26.32 29.63 23.26 7.41 24.29 20.00 21.05 19.05 20.00 37.50 16.67 25.00 54.55 21.74 26.92 30.77 20.00 25.00 23.53 25.93 17.14 K intron_retention Shawn_Tyler,CG14216,Zw chrX + chrX_19559227_19559284 chrX_19559226_19559227;chrX_19559284_19559285 chrX_19558968_19559226;chrX_19559285_19560902 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 K intron_retention Shawn_Tyler,CG14213 chrX + chrX_19533854_19533928 chrX_19533853_19533854;chrX_19533928_19533929 chrX_19533488_19533853;chrX_19533929_19534123 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 2.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 K jcn_only_AA CG6845,I_chr3L_148414_148465,I_chr3L_148414_148475,I_chr3L_148414_148489 chr3L + chr3L_148414_148465;chr3L_148414_148461;chr3L_148414_148489 chr3L_148414_148475 chr3L_148350_148413;chr3L_148490_148555 4.30 2.70 5.88 4.82 0.00 11.11 0.94 1.39 5.22 13.64 5.56 0.00 6.67 4.35 2.78 3.70 2.27 5.56 0.00 2.22 0.00 4.55 8.70 6.45 NA 6.25 NA NA 3.45 3.23 1.14 NA 8.33 2.22 18.52 NA 0.00 20.00 10.00 6.38 6.25 2.70 4.26 0.00 11.43 4.35 4.76 5.41 5.71 0.00 0.00 8.82 NA NA 1.37 0.00 0.00 2.33 K intron_retention Tfb1 chr2R + chr2R_10252441_10252500 chr2R_10252440_10252441;chr2R_10252500_10252501 chr2R_10251478_10252440;chr2R_10252501_10252676 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 K alternative_donor CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3088120_3088191;chr3L_3088129_3088191;chr3L_3088124_3088191 chr3L_3088139_3088191 chr3L_3088192_3088663;chr3L_3087957_3088119 0.65 0.62 0.70 1.36 1.67 0.00 0.00 0.55 1.26 1.52 0.93 0.47 0.00 2.88 2.17 0.72 1.03 0.76 0.00 1.52 0.00 0.00 0.93 0.59 0.00 0.79 0.65 0.00 0.00 0.00 0.79 0.99 0.00 1.06 0.00 0.75 0.93 0.75 1.04 0.00 0.00 1.28 1.08 0.00 0.54 1.66 0.44 0.00 0.44 1.41 0.90 0.00 0.70 0.00 0.00 0.00 1.46 0.60 K jcn_only_AD rut,I_chrX_14718760_14718821 chrX - chrX_14686462_14687506 chrX_14686462_14687158 chrX_14685281_14686461;chrX_14687507_14688185 93.94 80.95 90.48 75.76 90.48 81.82 NA 84.85 100.00 100.00 NA 92.31 NA NA 96.88 NA 96.15 87.80 NA 90.91 86.36 69.09 85.71 97.56 NA NA NA NA 79.41 96.15 95.00 92.00 95.40 94.44 100.00 92.00 100.00 87.50 98.18 100.00 NA 93.75 NA 97.87 96.61 100.00 95.45 93.33 94.12 NA NA NA NA NA 90.00 NA NA 100.00 K intron_retention CG5174,F_chr2R_14309059_14311473 chr2R + chr2R_14311992_14312376 chr2R_14311991_14311992;chr2R_14312376_14312377 chr2R_14311831_14311991;chr2R_14312377_14312539 3.23 5.56 4.35 2.62 4.84 2.90 1.81 3.23 1.36 4.88 0.00 3.65 6.10 6.85 6.67 4.71 1.32 5.56 4.60 3.47 3.37 2.15 4.05 2.56 8.33 0.00 5.19 6.06 0.00 0.00 4.21 7.69 3.51 5.00 0.00 2.00 2.13 0.00 1.98 3.49 5.17 3.54 3.03 2.90 3.23 0.00 2.70 6.25 2.39 1.92 1.28 0.00 0.00 1.59 4.92 1.47 0.00 4.94 K jcn_only_AD heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27691048_27691484 chr3R_27691048_27691472 chr3R_27690854_27691047;chr3R_27691485_27691758 88.89 88.10 85.71 87.18 91.67 87.50 NA 88.89 88.89 83.33 80.00 82.35 91.30 94.74 94.12 NA NA 94.59 80.00 86.36 100.00 88.64 93.88 81.82 91.67 86.84 92.31 90.91 92.31 92.86 90.48 80.00 87.50 91.43 87.88 78.12 92.59 93.55 87.04 46.51 92.86 85.14 93.10 85.71 94.29 93.18 90.91 93.10 90.48 82.35 94.87 84.00 89.36 82.14 97.56 88.89 85.71 88.24 K intron_retention MRP,I_chr2L_12724912_12725088,F_chr2L_12727117_12736035 chr2L + chr2L_12724912_12725711 chr2L_12724911_12724912;chr2L_12725711_12725712 chr2L_12724812_12724911;chr2L_12725712_12725796 5.34 3.95 7.02 12.09 4.61 7.96 4.36 8.22 5.49 6.19 6.96 7.35 3.98 6.96 6.94 7.29 6.18 4.27 7.84 5.26 3.61 3.86 6.19 3.11 5.56 1.42 4.42 6.49 5.30 7.61 3.69 5.45 9.80 6.37 4.52 10.55 3.86 3.43 3.79 8.85 7.81 4.24 6.57 4.52 0.00 3.03 3.10 15.00 5.46 2.98 4.79 4.37 6.48 0.00 4.96 5.34 2.77 9.86 K alternative_acceptor CG1599,I_chr2R_5729744_5729805 chr2R - chr2R_5729744_5729805;chr2R_5729673_5729805 chr2R_5729731_5729805 chr2R_5729806_5729905;chr2R_5729644_5729672 0.00 0.00 0.00 1.60 0.00 0.00 3.08 0.72 0.00 0.00 4.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 1.20 0.70 0.00 1.41 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 3.45 0.66 0.00 4.17 0.00 0.00 0.00 0.00 3.03 1.40 1.39 0.00 0.00 2.82 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 3.57 K jcn_only_AD Spase25,I_chrX_11379530_11379593 chrX + chrX_11379465_11379593 chrX_11379530_11379593 chrX_11379594_11379693;chrX_11379430_11379464 0.39 0.00 0.00 0.00 0.59 0.39 0.00 0.00 0.23 1.68 1.38 0.22 0.00 0.00 0.35 0.48 0.00 0.39 0.00 0.33 0.00 0.88 0.57 1.69 1.67 0.37 0.57 0.00 1.22 0.00 0.32 0.51 1.10 0.50 1.25 0.00 1.49 0.85 0.41 0.49 0.66 0.46 0.00 0.00 0.74 0.00 0.65 0.35 0.45 0.00 0.60 1.27 0.64 0.66 0.00 0.00 0.46 0.15 K jcn_only_AA Iswi chr2R + chr2R_8524243_8524328;chr2R_8524243_8524316 chr2R_8524243_8524348 chr2R_8524226_8524242;chr2R_8524349_8524495 100.00 94.59 98.04 99.05 100.00 97.30 98.86 96.55 99.35 NA 100.00 98.77 95.74 97.67 98.15 100.00 100.00 97.50 98.59 98.96 100.00 90.91 100.00 94.44 NA 100.00 100.00 NA NA 100.00 94.74 NA NA 100.00 100.00 NA 100.00 100.00 100.00 96.55 NA 97.85 100.00 100.00 NA 100.00 100.00 100.00 97.73 100.00 100.00 100.00 NA NA 100.00 100.00 96.30 100.00 K intron_retention CG8399,E_chr2R_11909562_11911687,E_chr2R_11909562_11911694,E_chr2R_11909564_11911694 chr2R + chr2R_11909882_11909948 chr2R_11909881_11909882;chr2R_11909948_11909949 chr2R_11909443_11909881;chr2R_11909949_11910283 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette Rab10,I_chrX_20122832_20123581 chrX + chrX_20122832_20123581 chrX_20122832_20123311;chrX_20123512_20123581 chrX_20123312_20123511 chrX_20122732_20122831;chrX_20123582_20123671 100.00 100.00 100.00 99.56 100.00 99.23 99.53 100.00 100.00 100.00 100.00 99.62 100.00 100.00 100.00 99.50 100.00 100.00 100.00 100.00 99.35 100.00 100.00 100.00 100.00 100.00 100.00 99.03 95.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.56 99.28 100.00 99.50 100.00 100.00 100.00 100.00 100.00 99.31 100.00 99.17 100.00 99.22 99.38 100.00 100.00 100.00 99.44 100.00 100.00 100.00 K intron_retention CG31935 chr2L - chr2L_1596422_1609485 chr2L_1596421_1596422;chr2L_1609485_1609486 chr2L_1595892_1596421;chr2L_1609486_1609517 0.00 NA NA NA NA NA 13.33 NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA 13.04 NA NA NA NA NA 7.14 NA 0.00 NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA 0.00 K alternative_last_exon CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_264375_264441;chr4_264375_265805 chr4_264375_265043 chr4_264442_264510;chr4_265806_266712 chr4_265044_265460 chr4_264260_264374 1.32 2.44 0.00 2.08 2.94 2.56 3.39 1.00 0.86 0.00 3.03 2.41 0.00 2.27 1.89 3.33 0.00 4.08 1.47 1.03 2.94 0.00 3.45 2.70 6.25 0.00 3.12 0.00 0.00 4.76 1.32 0.00 3.70 2.15 0.00 0.00 0.00 0.00 0.00 2.08 0.00 1.04 0.00 0.00 0.00 2.08 0.00 2.56 3.09 0.00 2.33 0.00 3.85 0.00 1.49 0.00 0.00 1.82 K jcn_only_AD CG9932,I_chr2L_13025498_13027193,I_chr2L_13031395_13035824 chr2L - chr2L_13025498_13026528;chr2L_13025498_13027065 chr2L_13025498_13027344 chr2L_13025398_13025497;chr2L_13027345_13027744 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL18A,I_chr2R_13434492_13434554,I_chr2R_13434492_13434576 chr2R - chr2R_13434492_13434554 chr2R_13434491_13434492;chr2R_13434554_13434555 chr2R_13434392_13434491;chr2R_13434555_13434654 8.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.56 NA NA NA NA NA NA 8.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.53 K alternative_donor eIF-5A,I_chr2R_19945430_19946454,I_chr2R_19945576_19946006,I_chr2R_19945723_19946006,I_chr2R_19945783_19946006,I_chr2R_19945852_19946006,I_chr2R_19945875_19946006,I_chr2R_19945921_19946006,I_chr2R_19946299_19946454,I_chr2R_19946657_19946733,I_chr2R_19948517_19948682 chr2R + chr2R_19945576_19946006;chr2R_19945426_19946006;chr2R_19945875_19946006;chr2R_19945430_19946006 chr2R_19945921_19946006 chr2R_19946007_19946106;chr2R_19945343_19945425 0.07 0.17 0.06 0.04 0.00 0.00 0.06 0.09 0.11 0.35 0.00 0.03 0.00 0.17 0.05 0.05 0.00 0.00 0.00 0.03 0.00 0.22 0.17 0.35 0.00 0.00 0.26 0.25 0.17 0.22 0.06 0.00 0.09 0.09 0.39 0.19 0.26 0.00 0.10 0.05 0.00 0.04 0.00 0.15 0.07 0.12 0.13 0.22 0.04 0.26 0.23 0.24 0.09 0.00 0.05 0.00 0.12 0.14 K jcn_only_AD CG3714,I_chr2L_4190825_4191774,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,I_chr2L_4196780_4197306,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4196780_4197146 chr2L_4196780_4197095 chr2L_4196715_4196779;chr2L_4197147_4197191 1.79 2.70 0.00 4.08 0.00 4.35 1.32 0.00 2.38 0.00 0.00 1.37 0.00 3.70 0.00 2.90 0.00 0.00 2.13 5.26 4.76 1.96 3.23 0.00 2.04 0.00 0.00 3.17 2.70 6.25 3.70 NA 0.00 2.50 2.70 0.00 0.00 0.00 0.00 1.79 2.86 0.00 2.56 1.09 NA 0.00 NA 4.00 0.00 3.23 1.79 2.00 NA NA 5.56 0.00 0.00 NA K jcn_only_AD Cg25C,I_chr2L_5029811_5029873 chr2L + chr2L_5029747_5030136;chr2L_5029637_5030136 chr2L_5029811_5030136 chr2L_5030137_5030237;chr2L_5029620_5029636 70.16 86.84 70.49 56.41 58.70 56.10 71.64 75.00 68.75 75.00 88.57 82.54 70.10 72.55 69.62 77.78 67.44 59.38 60.53 72.26 82.47 64.10 79.75 87.50 73.08 64.52 75.00 73.53 60.34 NA 47.69 51.52 70.91 61.98 81.58 65.31 71.43 78.26 85.42 60.00 70.21 47.75 77.36 60.26 53.33 66.23 85.71 58.21 58.19 68.42 92.75 62.50 46.99 86.36 58.42 82.05 80.85 55.56 K intron_retention CG5554,gbb chr2R + chr2R_19732855_19733057 chr2R_19732854_19732855;chr2R_19733057_19733058 chr2R_19732538_19732854;chr2R_19733058_19733219 1.33 0.00 1.16 2.65 1.18 1.34 1.69 1.09 1.25 0.00 2.94 1.86 0.00 0.00 1.73 0.72 0.00 1.34 2.10 1.33 0.74 3.53 1.23 0.43 2.58 2.63 5.07 2.48 3.45 0.00 3.12 1.89 0.63 2.30 0.84 0.00 1.39 0.97 1.48 2.88 0.75 2.13 1.80 0.62 0.98 1.68 1.76 1.32 1.99 1.73 2.14 0.00 0.00 1.27 1.20 1.25 0.46 1.55 K intron_retention CG32103,I_chr3L_12398261_12403200 chr3L - chr3L_12398261_12401209 chr3L_12398260_12398261;chr3L_12401209_12401210 chr3L_12398161_12398260;chr3L_12401210_12401763 1.33 0.00 1.22 2.25 2.70 2.99 2.27 4.26 2.48 0.00 0.00 3.88 1.67 0.00 2.04 5.95 0.00 2.70 5.00 1.69 2.90 4.69 1.69 0.00 0.00 0.00 3.70 7.25 5.63 0.00 0.00 0.00 3.03 3.74 0.00 0.00 1.40 0.00 1.65 1.00 0.00 1.50 0.00 1.20 0.00 0.00 0.00 1.37 1.44 0.00 0.99 1.33 0.00 0.00 3.80 0.00 1.47 0.00 K jcn_only_AD Mgat2,I_chr3R_25845406_25845472,I_chr3R_25845406_25846373 chr3R - chr3R_25845406_25845472;chr3R_25845406_25846373;chr3R_25845406_25847670 chr3R_25845406_25847371 chr3R_25845317_25845405;chr3R_25847671_25847898 93.10 96.30 95.45 88.46 NA NA NA NA 93.10 NA NA 92.00 NA NA NA 90.91 NA NA NA 85.37 NA 58.06 92.11 96.55 NA NA 95.24 NA 65.22 95.00 NA NA NA 92.31 95.65 96.43 89.29 95.24 85.19 97.50 NA 90.00 NA 96.43 NA 95.83 87.10 89.19 96.00 NA 93.55 NA 100.00 NA NA 92.00 NA NA K jcn_only_AD CG15609,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12896448_12897557 chr2R_12896448_12897005 chr2R_12896351_12896447;chr2R_12897558_12897678 0.00 0.00 0.00 1.06 0.00 0.00 1.77 0.00 0.57 1.83 0.00 0.00 0.00 3.03 0.00 2.15 0.00 0.00 2.20 0.83 1.22 0.00 0.00 0.60 0.00 1.04 0.98 0.00 0.00 0.00 2.97 1.00 0.94 0.00 0.00 0.00 0.00 0.85 0.00 1.44 1.35 0.00 0.00 0.00 0.00 0.67 0.00 2.36 0.61 1.01 0.74 0.00 2.78 0.00 0.00 0.96 0.00 0.93 K jcn_only_AD miple2,I_chr3L_271508_273549,I_chr3L_271695_273549,I_chr3L_271922_273549,I_chr3L_274251_274594 chr3L + chr3L_271792_273549;chr3L_271217_273549;chr3L_271695_273549 chr3L_273391_273549 chr3L_273550_273649;chr3L_271209_271216 2.50 5.77 4.44 2.02 2.94 0.00 0.00 8.70 1.75 3.45 NA 0.00 NA 6.06 0.00 0.00 0.00 NA 4.55 2.56 NA 2.17 6.59 0.00 2.17 0.00 0.00 6.25 5.13 2.50 5.56 0.00 5.13 4.12 0.00 5.56 6.25 0.00 0.00 3.66 2.04 2.74 3.33 4.30 0.00 1.96 2.97 3.85 2.52 3.12 3.53 0.00 1.52 0.00 0.00 1.43 6.76 0.00 K intron_retention Nnf1b,I_chr2L_810759_810816,KH1 chr2L + chr2L_811022_811088 chr2L_811021_811022;chr2L_811088_811089 chr2L_810817_811021;chr2L_811089_811203 4.38 4.88 4.35 6.67 5.71 4.55 7.14 5.41 6.32 NA 0.00 5.41 0.00 5.00 3.92 6.15 6.06 5.26 0.00 3.41 0.00 16.67 0.00 7.50 0.00 7.14 4.76 0.00 6.25 0.00 5.71 3.33 9.52 4.41 0.00 4.35 0.00 5.13 4.44 6.67 5.88 4.62 0.00 0.00 0.00 0.00 4.08 0.00 4.00 3.23 5.00 7.41 0.00 0.00 0.00 0.00 5.63 0.00 K intron_retention Pino,I_chr2L_1115944_1117443,I_chr2L_1116691_1116908,I_chr2L_1117517_1117866,I_chr2L_1117918_1118565 chr2L - chr2L_1116691_1117443 chr2L_1116690_1116691;chr2L_1117443_1117444 chr2L_1116591_1116690;chr2L_1117444_1117516 2.47 1.11 2.86 1.89 0.00 0.00 3.95 2.80 2.27 0.00 0.00 3.50 0.00 1.52 2.53 7.81 0.00 4.00 5.63 1.69 2.78 1.27 2.05 4.81 2.70 4.69 4.12 7.55 0.00 2.56 3.33 0.00 0.00 5.41 1.41 3.03 2.25 0.86 0.00 1.65 10.81 2.48 1.72 0.00 4.55 3.37 1.22 4.92 2.05 2.75 2.50 2.47 3.23 0.00 0.00 3.75 2.11 4.65 K jcn_only_AA CG3714,I_chr2L_4190825_4191774,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,I_chr2L_4196780_4197306,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4196780_4197146 chr2L_4196815_4197146 chr2L_4197147_4197191;chr2L_4196715_4196779 5.56 7.69 3.45 2.08 0.00 8.33 13.87 6.45 3.53 8.33 5.41 1.37 0.00 3.70 2.56 4.29 7.50 0.00 8.00 3.57 0.00 3.85 10.45 8.00 11.11 14.71 9.20 6.15 5.26 16.67 1.27 NA 11.11 4.88 5.26 39.02 5.00 15.15 4.00 1.79 12.82 5.75 13.64 7.14 NA 4.55 NA 7.69 10.14 7.69 3.51 7.55 NA NA 5.56 0.00 0.00 NA K intron_retention CG9797 chr3R - chr3R_4556335_4556391 chr3R_4556334_4556335;chr3R_4556391_4556392 chr3R_4556255_4556334;chr3R_4556392_4557095 0.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 K multi_cassette CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2439831_2444498 chr3L_2439831_2443389;chr3L_2443839_2443987;chr3L_2444088_2444498 chr3L_2443390_2443838;chr3L_2443988_2444087 chr3L_2439731_2439830;chr3L_2444499_2446101 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Pect,I_chr2L_13207997_13208109,E_chr2L_13208285_13210076 chr2L + chr2L_13208778_13209471 chr2L_13208777_13208778;chr2L_13209471_13209472 chr2L_13208665_13208777;chr2L_13209472_13209485 9.62 10.15 7.35 21.67 11.72 10.64 8.70 10.61 11.32 7.29 7.48 10.03 43.06 11.59 8.37 10.17 16.06 7.25 13.17 9.05 8.54 10.40 7.97 9.68 13.68 11.92 10.67 21.18 8.99 6.54 11.79 8.00 10.40 10.03 7.89 5.00 9.88 10.96 7.76 8.40 13.33 10.22 10.98 9.94 8.26 7.30 9.58 5.59 10.26 8.20 8.16 9.39 5.19 4.61 9.62 7.36 8.02 7.59 K alternative_acceptor APC4,I_chrX_8978433_8978480,RI_chrX_8980352_8980400 chrX + chrX_8978433_8978501 chrX_8978433_8978480 chrX_8978333_8978432;chrX_8978502_8978580 5.56 NA 5.56 7.14 NA NA 7.69 0.00 0.00 NA NA 7.14 NA NA NA 4.55 NA NA NA 8.70 NA NA NA NA NA NA NA NA NA NA NA NA NA 5.56 NA NA NA NA NA 7.14 NA 0.00 NA NA NA NA NA NA 3.85 NA 7.69 NA NA NA NA NA NA NA K intron_retention CG14442,I_chrX_6586147_6586435 chrX - chrX_6586898_6587143 chrX_6586897_6586898;chrX_6587143_6587144 chrX_6586436_6586897;chrX_6587144_6589034 80.65 78.57 85.71 94.87 65.38 79.31 88.24 73.17 81.36 80.00 76.67 82.00 93.33 88.46 75.00 85.19 76.19 63.64 82.35 84.21 80.95 74.19 86.96 84.78 96.15 90.00 86.67 83.33 81.25 63.64 94.44 71.43 66.29 84.09 75.86 93.10 88.10 77.55 82.69 68.57 80.00 73.13 76.19 88.10 56.45 76.79 74.07 56.82 80.00 80.65 76.47 87.50 78.12 83.33 78.95 82.05 87.10 71.08 N intron_retention CG34413,RI_chr2R_20772104_20774745,I_chr2R_20773500_20774745 chr2R + chr2R_20774473_20774745 chr2R_20774472_20774473;chr2R_20774745_20774746 chr2R_20774215_20774472;chr2R_20774746_20774845 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.24 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG4420,I_chrX_16335942_16337525 chrX + chrX_16335942_16337525 chrX_16336054_16337525 chrX_16337526_16337625;chrX_16335842_16335941 100.00 100.00 99.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.66 100.00 99.64 100.00 100.00 100.00 100.00 100.00 100.00 99.26 100.00 100.00 100.00 100.00 100.00 99.72 99.58 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.71 100.00 99.39 99.65 100.00 100.00 99.56 100.00 100.00 99.50 100.00 K alternative_acceptor Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_137255_137311 chr4_137257_137311 chr4_137312_137344;chr4_137167_137254 95.12 100.00 93.75 96.43 NA 93.75 93.75 96.77 94.44 NA 90.91 92.45 96.15 97.14 100.00 92.21 100.00 100.00 95.65 96.30 NA NA 93.75 95.24 100.00 NA 88.89 NA NA NA 100.00 91.67 NA 92.31 92.86 90.91 NA NA 100.00 100.00 100.00 92.68 90.00 87.50 100.00 100.00 95.45 90.91 92.42 95.00 96.30 100.00 100.00 90.91 100.00 95.00 94.44 93.75 K intron_retention Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911803_5913354 chr2R_5911802_5911803;chr2R_5913354_5913355 chr2R_5911703_5911802;chr2R_5913355_5913433 41.67 NA 40.00 46.15 NA NA NA 38.89 39.13 NA NA 22.22 63.64 NA NA 53.85 41.67 NA 25.00 52.63 25.00 NA NA NA NA NA NA NA NA NA 45.45 NA NA 50.00 NA NA NA NA NA NA NA 45.00 NA NA NA NA NA 50.00 36.84 NA NA NA NA NA 38.46 NA NA NA K intron_retention bbx chrX + chrX_21234629_21234686 chrX_21234628_21234629;chrX_21234686_21234687 chrX_21234128_21234628;chrX_21234687_21236286 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 7.55 0.00 0.00 0.00 0.00 1.72 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9240,Pis chrX - chrX_15597352_15597602 chrX_15597351_15597352;chrX_15597602_15597603 chrX_15597217_15597351;chrX_15597603_15597789 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 K intron_retention CG10737 chr2R + chr2R_15062754_15063692 chr2R_15062753_15062754;chr2R_15063692_15063693 chr2R_15062592_15062753;chr2R_15063693_15063852 56.12 56.12 61.62 52.80 54.10 67.82 59.00 55.38 58.06 39.13 43.28 60.28 66.67 58.62 53.40 69.39 58.67 55.29 60.98 59.14 65.62 51.28 47.37 56.03 58.23 63.74 45.13 37.84 50.00 52.81 68.22 52.33 56.84 62.70 61.54 62.11 42.72 46.73 52.83 76.36 56.44 65.93 70.97 51.09 61.62 60.92 54.76 54.81 60.89 50.54 54.42 51.47 51.58 57.55 63.11 55.45 51.93 54.14 K intron_retention Prosbeta7,I_chr3R_1183570_1183645 chr3R - chr3R_1183579_1183645 chr3R_1183578_1183579;chr3R_1183645_1183646 chr3R_1183077_1183578;chr3R_1183646_1183745 0.00 0.44 0.00 0.00 0.00 0.00 0.52 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.97 0.64 1.02 0.00 0.00 0.00 1.09 0.93 0.43 0.55 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.60 0.35 0.41 0.00 0.86 1.20 0.00 0.00 0.79 0.00 0.00 0.00 0.93 K intron_retention CG10516 chr3L + chr3L_15962661_15962725 chr3L_15962660_15962661;chr3L_15962725_15962726 chr3L_15962099_15962660;chr3L_15962726_15963001 0.00 4.17 0.00 7.41 NA NA 4.00 4.76 4.88 8.33 NA 6.45 0.00 NA NA 0.00 NA NA NA 3.33 NA 0.00 0.00 0.00 0.00 NA 6.90 11.11 21.43 0.00 NA 0.00 0.00 0.00 0.00 12.00 0.00 0.00 0.00 0.00 8.33 0.00 NA 4.35 0.00 4.44 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 NA 0.00 7.50 0.00 K jcn_only_AD CG8949,I_chrX_16971474_16971708,I_chrX_16971501_16971713 chrX - chrX_16971474_16971713 chrX_16971474_16971708 chrX_16971401_16971473;chrX_16971714_16971808 0.00 0.00 0.00 1.12 6.45 1.92 0.00 2.99 0.97 0.00 0.00 0.98 0.00 0.00 8.89 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 2.94 5.26 0.00 3.70 0.00 0.00 1.89 0.00 0.00 0.00 9.38 0.00 1.52 4.17 3.51 1.23 NA 4.17 2.50 3.51 3.12 3.03 0.00 0.00 2.27 2.44 0.00 2.27 0.00 0.00 1.61 0.00 0.00 2.08 K intron_retention Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2363404 chr2L_2361585_2361586;chr2L_2363404_2363405 chr2L_2361486_2361585;chr2L_2363405_2363463 19.05 NA NA 15.79 NA NA 36.36 20.00 23.53 NA NA 12.50 NA NA NA 12.50 NA NA NA NA NA 17.65 NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA 22.22 NA 19.05 NA NA NA NA NA NA 25.00 NA 11.11 NA NA NA 14.29 NA NA NA K jcn_only_AD Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_150069_150307;chr4_150069_150378;chr4_150069_150353;chr4_150069_150295;chr4_150069_150205 chr4_150069_150180 chr4_149969_150068;chr4_150379_150379 17.67 NA NA 17.54 16.67 33.33 20.73 11.11 26.09 NA NA 16.67 26.67 25.93 4.17 15.00 32.56 19.05 22.22 20.37 NA NA NA NA NA 11.54 NA NA NA NA 12.82 NA NA 18.18 NA NA NA NA NA NA NA 15.79 15.00 NA NA NA NA NA 17.81 NA NA NA NA NA 10.81 NA NA NA K intron_retention CG31731,I_chr2L_13786850_13786922 chr2L + chr2L_13785976_13786279 chr2L_13785975_13785976;chr2L_13786279_13786280 chr2L_13785797_13785975;chr2L_13786280_13786401 5.88 10.26 5.56 7.58 6.90 0.00 7.55 4.00 3.92 8.70 7.69 8.22 15.62 4.88 2.38 3.33 4.76 3.64 10.00 5.41 5.71 2.56 7.32 2.22 8.33 11.76 11.43 4.76 3.45 6.90 11.54 0.00 13.04 5.41 13.33 0.00 6.25 3.57 8.00 5.88 NA 4.76 8.33 5.88 0.00 7.41 0.00 5.56 7.50 8.33 14.29 2.86 NA NA 3.57 NA 5.88 0.00 K alternative_donor chico,I_chr2L_10246534_10246899 chr2L - chr2L_10246040_10246184;chr2L_10246040_10247024;chr2L_10246040_10246867;chr2L_10246040_10246899 chr2L_10246040_10246755 chr2L_10245878_10246039;chr2L_10247025_10247051 4.65 5.56 3.85 3.23 0.00 5.56 13.79 11.11 6.52 0.00 0.00 2.63 4.55 4.35 8.33 4.65 15.79 5.88 7.69 9.43 16.67 0.00 4.17 6.25 7.14 10.53 15.79 0.00 11.11 0.00 3.57 0.00 4.76 2.86 10.00 0.00 7.41 0.00 9.09 4.44 0.00 5.41 5.88 6.90 0.00 14.29 0.00 4.00 9.76 0.00 0.00 0.00 7.69 0.00 9.68 0.00 8.33 4.17 K alternative_acceptor CG14445 chrX + chrX_6132234_6132978 chrX_6132234_6132753 chrX_6132059_6132233;chrX_6132979_6133207 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor 14-3-3epsilon,I_chr3R_14068632_14073155,RI_chr3R_14074062_14074138,I_chr3R_14074016_14074138 chr3R + chr3R_14073874_14073936;chr3R_14073874_14073939;chr3R_14073874_14073942 chr3R_14073874_14073954 chr3R_14073693_14073873;chr3R_14073955_14074015 45.50 46.31 44.55 44.90 46.36 43.22 43.84 41.93 48.53 41.87 44.04 44.35 47.16 47.21 46.04 46.23 47.02 42.96 45.83 41.33 49.18 42.75 47.05 50.32 37.24 37.36 64.04 51.48 41.01 45.42 45.36 44.50 41.43 43.41 43.82 29.41 48.33 48.69 48.82 42.29 42.28 45.50 45.68 49.25 46.17 43.37 46.38 39.46 46.17 51.29 52.06 46.13 45.66 44.39 44.76 45.88 51.95 40.58 K intron_retention CG5850,I_chr2L_9963013_9963451 chr2L - chr2L_9963013_9963092 chr2L_9963012_9963013;chr2L_9963092_9963093 chr2L_9962913_9963012;chr2L_9963093_9963753 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.29 0.00 0.00 0.00 0.00 0.00 0.00 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 K intron_retention Cyp4p1 chr2R + chr2R_5127786_5127844 chr2R_5127785_5127786;chr2R_5127844_5127845 chr2R_5127569_5127785;chr2R_5127845_5128045 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 5.56 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA K jcn_only_AD Df31,RE_chr2L_21628206_21629662,I_chr2L_21628206_21629666,I_chr2L_21628210_21628515,I_chr2L_21628210_21628944,I_chr2L_21628210_21629216,EI_chr2L_21628210_21629715,REI_chr2L_21628210_21629884,I_chr2L_21628224_21629666,I_chr2L_21628734_21629666 chr2L - chr2L_21628210_21629216;chr2L_21628210_21629666;chr2L_21628210_21628515;chr2L_21628210_21628944;chr2L_21628210_21629715 chr2L_21628210_21629884 chr2L_21628124_21628209;chr2L_21629885_21629918 0.24 0.21 0.20 0.14 0.65 0.26 0.06 0.35 0.25 0.25 0.14 0.43 0.49 0.26 0.19 0.10 0.15 0.24 0.06 0.12 0.16 1.41 0.05 0.13 0.00 0.24 0.18 0.41 1.75 0.40 0.08 0.70 0.98 0.34 0.22 0.00 0.35 0.15 0.26 1.55 1.06 0.36 0.41 0.56 0.46 0.33 0.19 0.90 0.24 0.21 0.00 0.15 0.19 0.13 0.56 0.14 0.16 0.43 K intron_retention None chrU - chrU_5771599_5771693 chrU_5771598_5771599;chrU_5771693_5771694 2.99 3.74 4.72 4.88 1.82 3.45 2.29 3.32 2.61 2.08 1.15 3.53 4.60 3.51 3.05 4.55 4.26 4.46 6.00 2.52 0.00 3.41 0.00 0.00 1.53 2.86 1.89 0.00 2.45 3.69 3.82 2.32 2.72 3.33 3.03 0.00 0.00 4.49 0.00 4.39 4.98 2.40 2.02 5.02 3.42 2.39 1.42 2.99 4.24 1.95 2.97 3.39 2.62 3.03 4.58 2.36 0.00 4.09 N intron_retention PNGase,I_chr2R_1906759_1906817,I_chr2R_1906899_1906977 chr2R + chr2R_1901471_1905319 chr2R_1901470_1901471;chr2R_1905319_1905320 chr2R_1901457_1901470;chr2R_1905320_1905713 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.13 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention I_chr2L_6323791_6325172,Gef26,I_chr2L_6330719_6330770 chr2L + chr2L_6329698_6330122 chr2L_6329697_6329698;chr2L_6330122_6330123 chr2L_6329548_6329697;chr2L_6330123_6330563 3.12 7.41 4.00 5.88 NA NA 0.00 0.00 4.65 0.00 NA 12.50 NA NA 0.00 NA NA 0.00 NA 6.45 NA 0.00 0.00 16.67 7.69 NA 3.12 12.50 3.85 0.00 NA NA 0.00 6.25 NA 0.00 1.75 10.00 4.08 5.00 NA 12.50 NA 0.00 0.00 0.00 7.41 0.00 5.56 0.00 6.45 0.00 0.00 8.70 NA 0.00 0.00 4.35 K intron_retention Rtnl1,I_chr2L_4994995_4995154,I_chr2L_4994995_5006383,RE_chr2L_4994997_5008180,I_chr2L_4999312_5000248,I_chr2L_4999386_4999670,I_chr2L_4999386_5000201,I_chr2L_5004757_5006383,I_chr2L_5004775_5006231,I_chr2L_5004775_5006381,I_chr2L_5004775_5006392,I_chr2L_5027222_5028118 chr2L - chr2L_4994995_5008180 chr2L_4994994_4994995;chr2L_5008180_5008181 chr2L_4994897_4994994;chr2L_5008181_5008280 3.17 5.62 2.91 11.27 2.78 5.68 5.45 2.96 4.47 5.56 2.67 6.92 8.22 1.30 0.87 7.89 3.37 4.21 2.73 6.06 1.72 2.04 1.98 1.85 0.00 3.48 5.13 3.64 7.95 2.47 3.17 3.03 4.17 3.33 2.13 1.89 0.83 2.50 3.42 3.03 2.15 4.76 3.30 3.23 3.12 2.65 5.19 7.78 2.58 3.70 5.74 1.82 4.08 0.00 2.83 2.41 3.19 3.03 K intron_retention CG1494 chrX + chrX_21162909_21162979 chrX_21162908_21162909;chrX_21162979_21162980 chrX_21162159_21162908;chrX_21162980_21163197 0.00 0.00 0.00 0.00 0.00 4.17 1.06 0.00 2.68 0.00 0.00 3.41 0.00 2.13 6.90 1.22 0.00 0.00 3.66 1.80 0.00 0.00 0.00 0.00 0.00 0.00 6.02 0.00 0.00 0.00 2.50 2.17 0.00 2.97 3.28 0.00 2.38 0.00 0.00 2.90 1.64 2.80 0.00 0.00 0.00 0.00 0.00 0.00 0.85 1.49 1.11 0.00 0.00 3.61 0.00 3.03 0.00 0.00 K intron_retention Df31,EI_chr2L_21628210_21629715,REI_chr2L_21628210_21629884 chr2L - chr2L_21629777_21629884 chr2L_21629776_21629777;chr2L_21629884_21629885 chr2L_21629716_21629776;chr2L_21629885_21629918 98.14 98.94 98.92 98.45 97.45 97.87 99.49 98.75 98.14 91.26 98.78 98.42 98.20 98.19 98.05 98.56 98.08 97.08 98.04 97.95 97.24 95.21 99.65 99.12 99.40 99.30 99.52 92.31 99.32 97.39 97.97 96.82 97.63 98.14 100.00 99.44 95.68 98.01 97.76 94.35 99.60 97.67 98.38 95.80 94.44 98.65 99.59 98.05 97.59 97.24 99.65 98.55 96.08 100.00 98.62 98.33 98.28 97.45 K jcn_only_AA CG10082,E_chr2R_17533874_17544072,RI_chr2R_17537544_17537615,I_chr2R_17543813_17543881 chr2R + chr2R_17540069_17540417;chr2R_17540069_17540723;chr2R_17540069_17542279 chr2R_17540069_17541147 chr2R_17539942_17540068 1.11 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 2.70 2.22 0.00 2.63 0.00 1.92 0.00 0.00 0.00 4.50 3.33 7.94 1.75 2.33 0.00 2.22 2.56 0.00 0.00 1.67 4.17 5.13 2.86 1.25 1.67 2.00 2.25 0.00 1.11 1.83 0.00 0.88 7.14 1.19 2.04 0.00 0.00 0.00 1.90 1.56 0.00 2.22 0.00 0.00 0.00 2.86 0.00 0.00 K cassette CG14619,RI_chrX_21860097_21868647,I_chrX_21869837_21869915 chrX + chrX_21860097_21868647 chrX_21860097_21868000;chrX_21868212_21868647 chrX_21868001_21868211 chrX_21859997_21860096;chrX_21868648_21868747 98.20 98.88 97.62 98.99 95.52 98.57 99.01 97.03 96.35 100.00 100.00 99.37 94.34 98.25 98.81 97.26 96.30 98.48 98.31 97.87 98.21 97.69 97.12 97.44 97.67 98.21 96.85 93.44 87.69 96.63 93.59 97.62 98.70 98.31 97.50 98.81 99.48 98.20 99.39 96.95 97.62 96.89 100.00 98.06 98.33 98.77 95.59 98.57 97.69 98.44 99.24 97.01 98.41 98.46 97.44 95.71 98.44 100.00 K intron_retention Paip2,I_chr3R_8809774_8809832 chr3R + chr3R_8809770_8809832 chr3R_8809769_8809770;chr3R_8809832_8809833 chr3R_8809674_8809769;chr3R_8809833_8809932 0.00 0.00 0.00 2.05 0.00 0.00 0.00 0.00 0.49 0.00 0.00 2.76 0.00 0.00 0.99 1.83 0.00 2.22 1.10 1.14 0.00 2.30 0.00 0.00 2.13 0.00 7.50 14.00 8.11 0.00 0.00 0.00 1.26 1.40 1.28 0.00 1.14 0.00 0.00 0.84 1.72 1.15 0.00 1.56 1.65 1.69 0.00 0.46 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 K intron_retention CaMKII,I_chr4_1059085_1060638,I_chr4_1059085_1065781,RI_chr4_1061742_1064093,RI_chr4_1061742_1065781,I_chr4_1061989_1065781,RI_chr4_1063745_1065781,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1059064_1060638 chr4_1059063_1059064;chr4_1060638_1060639 chr4_1059016_1059063;chr4_1060639_1060704 18.90 NA NA 0.00 NA NA 21.43 NA 18.75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 19.05 NA NA NA NA NA NA NA NA NA K alternative_last_exon lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3963608_3965235 chr2R_3963608_3963797 chr2R_3965236_3966671 chr2R_3963798_3964611 chr2R_3963365_3963607 96.30 96.77 96.55 97.83 95.65 96.15 96.55 97.83 97.87 95.65 95.00 97.56 95.65 95.24 96.00 95.45 95.45 95.00 96.15 97.92 90.48 91.67 97.67 97.44 95.45 96.30 97.22 94.74 95.65 96.67 96.30 95.45 96.77 97.06 96.15 96.15 98.04 97.30 98.08 98.08 88.00 97.73 94.74 96.67 96.97 97.30 97.14 93.55 97.78 95.00 97.37 94.74 95.83 96.77 96.15 96.97 96.30 91.89 K alternative_acceptor CG16833,I_chr2L_10994022_10994325,I_chr2L_10994919_10997334 chr2L + chr2L_10989875_10990095 chr2L_10989875_10989973 chr2L_10989656_10989874;chr2L_10990096_10990783 16.23 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA 18.18 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention nimB5,Cyp28a5 chr2L + chr2L_13970867_13971138 chr2L_13970866_13970867;chr2L_13971138_13971139 chr2L_13970488_13970866;chr2L_13971139_13971681 2.90 2.76 1.49 4.49 1.55 0.94 3.42 6.38 2.95 0.00 2.86 2.90 2.61 1.80 0.71 5.62 1.54 3.31 3.92 2.11 3.25 7.41 2.11 3.20 4.11 2.27 2.35 6.45 3.45 0.00 2.11 7.14 3.33 3.42 1.82 0.00 4.25 2.01 3.82 3.51 0.00 2.50 3.23 3.77 0.00 4.88 5.00 4.00 4.57 3.66 2.90 2.60 2.78 0.00 0.75 4.20 4.32 2.67 N jcn_only_AD I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17181974_17182126 chr3R - chr3R_17181974_17200781;chr3R_17181974_17182039 chr3R_17181974_17182268 chr3R_17181929_17181973 0.00 0.00 0.00 45.95 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA 0.00 0.00 0.00 19.51 NA NA NA 22.22 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 K jcn_only_AD CG15609,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12902708_12903163;chr2R_12902708_12903198;chr2R_12902708_12903167 chr2R_12902708_12903184 chr2R_12902608_12902707;chr2R_12903199_12903284 0.00 0.00 0.00 1.14 0.00 0.00 1.69 3.06 0.00 0.00 4.00 3.33 0.00 2.38 0.00 0.00 0.00 0.00 2.13 2.74 0.00 0.00 2.86 0.00 0.00 2.38 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.08 2.44 0.00 0.00 0.00 NA 0.00 0.00 1.27 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 5.00 NA 0.00 K intron_retention CG31522,I_chr3R_270285_272461,I_chr3R_272255_272359,RI_chr3R_273677_279264 chr3R - chr3R_272545_273422 chr3R_272544_272545;chr3R_273422_273423 chr3R_272462_272544;chr3R_273423_273560 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 2.27 0.00 NA NA 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 K alternative_donor E(bx),I_chr3L_246324_246699 chr3L - chr3L_246324_246885;chr3L_246324_246438;chr3L_246324_246408;chr3L_246324_246794;chr3L_246324_246382;chr3L_246324_246427 chr3L_246324_246388 chr3L_246224_246323;chr3L_246886_246901 0.00 0.00 0.00 0.00 0.00 0.00 3.64 0.00 3.08 0.00 0.00 1.92 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpS8,REI_chr3R_25687741_25687920,I_chr3R_25687817_25687920,F_chr3R_25696884_25696960 chr3R + chr3R_25687657_25687920 chr3R_25687656_25687657;chr3R_25687920_25687921 chr3R_25687646_25687656;chr3R_25687921_25688020 0.14 0.10 0.14 0.14 0.03 0.10 0.05 0.08 0.12 0.32 0.07 0.09 0.11 0.00 0.06 0.20 0.04 0.09 0.14 0.16 0.14 0.21 0.68 0.33 0.27 0.00 0.62 0.74 0.66 0.17 0.33 0.65 0.00 0.12 0.76 0.71 0.11 0.00 0.13 0.15 0.48 0.12 0.11 0.28 0.05 0.37 0.15 0.50 0.11 0.22 0.71 0.00 0.26 0.25 0.07 0.25 0.18 0.56 K intron_retention Met chrX + chrX_11512194_11512262 chrX_11512193_11512194;chrX_11512262_11512263 chrX_11510757_11512193;chrX_11512263_11514186 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 NA 7.14 NA 0.00 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 6.90 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 K alternative_donor CG7337,I_chr2L_1910010_1910066,RI_chr2L_1911951_1913208,RI_chr2L_1912284_1913208,I_chr2L_1938620_1938887,I_chr2L_1942183_1942233 chr2L + chr2L_1912235_1913208;chr2L_1912284_1913208;chr2L_1911951_1913208 chr2L_1911870_1913208 chr2L_1913209_1913308;chr2L_1911851_1911869 39.23 44.44 28.57 50.00 40.00 40.00 12.50 28.57 23.08 NA 44.44 36.84 50.00 31.25 41.67 41.38 18.18 38.46 20.00 52.17 45.45 42.86 50.00 33.33 20.00 0.00 54.55 NA NA 20.00 42.31 NA NA 26.09 33.33 66.67 NA 42.86 NA 36.36 NA 42.86 27.27 50.00 NA NA NA 16.67 37.04 NA 50.00 42.86 NA NA 33.33 NA NA NA K intron_retention egg,Lcp9,I_chr2R_20674654_20674897 chr2R - chr2R_20664932_20664989 chr2R_20664931_20664932;chr2R_20664989_20664990 chr2R_20664170_20664931;chr2R_20664990_20665495 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CEI_chrX_17177009_17196871,CG5445,I_chrX_17196752_17196871,RI_chrX_17196772_17196871,I_chrX_17196820_17196875,I_chrX_17198393_17198730 chrX + chrX_17196681_17196871;chrX_17196546_17196871;chrX_17196820_17196871;chrX_17196541_17196871 chrX_17196617_17196871 chrX_17196872_17196971;chrX_17196536_17196540 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG15134 chr2L + chr2L_16904713_16905298;chr2L_16904611_16905298 chr2L_16904662_16905298 chr2L_16905299_16905389;chr2L_16904460_16904610 13.33 12.50 8.70 15.00 19.05 15.38 5.88 9.30 4.44 38.46 11.11 14.63 4.55 7.41 3.33 6.90 16.67 14.29 0.00 7.69 14.29 16.22 13.16 4.55 15.00 7.41 21.74 15.38 13.64 11.11 6.45 33.33 33.33 9.62 13.64 15.00 0.00 16.67 12.50 0.00 10.00 6.38 9.52 21.74 0.00 18.18 16.67 18.42 10.26 22.22 13.33 13.33 12.50 0.00 17.65 42.86 20.00 30.77 K cassette Hrb27C,I_chr2L_6924401_6924743 chr2L + chr2L_6920862_6923783 chr2L_6920862_6922637;chr2L_6922827_6923783 chr2L_6922638_6922826 chr2L_6920793_6920861;chr2L_6923784_6924400 65.42 74.04 59.09 65.81 60.92 57.26 66.27 67.16 70.85 NA 60.87 52.10 61.54 70.99 60.00 53.57 64.66 57.89 65.03 93.83 57.73 51.47 67.11 71.13 69.86 59.40 76.67 74.03 51.67 61.29 64.62 61.29 58.67 64.41 71.43 74.29 62.86 67.53 72.55 66.09 62.96 59.57 63.40 66.33 68.00 66.67 66.67 53.01 68.20 75.00 70.00 67.05 54.55 66.67 58.24 69.57 68.97 51.95 K intron_retention CG4630,RI_chr2R_9103472_9103634,I_chr2R_9103765_9103852,I_chr2R_9103910_9104108,I_chr2R_9103956_9104108,RI_chr2R_9104206_9104265 chr2R - chr2R_9103956_9104108 chr2R_9103955_9103956;chr2R_9104108_9104109 chr2R_9103910_9103955;chr2R_9104109_9104202 0.00 NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA K alternative_acceptor Mi-2 chr3L - chr3L_19881576_19881637 chr3L_19881579_19881637 chr3L_19881638_19881714;chr3L_19881332_19881575 8.33 9.46 7.25 6.17 7.27 10.94 6.17 6.19 6.79 9.23 6.56 8.80 11.90 8.33 8.00 6.85 9.52 8.51 5.77 9.38 16.00 7.46 8.13 11.11 9.62 3.77 6.59 12.09 6.38 8.18 8.47 8.33 8.79 7.53 10.45 8.79 8.06 5.68 9.52 10.83 7.27 7.32 8.70 7.69 8.51 8.00 13.16 10.00 7.77 12.20 5.49 10.45 7.94 14.29 11.94 7.55 8.82 5.56 K jcn_only_AA TSG101 chr3L + chr3L_16835977_16836255 chr3L_16835977_16836066 chr3L_16835892_16835976 99.25 98.97 99.11 99.77 99.36 100.00 99.66 99.15 99.28 97.64 100.00 99.09 100.00 100.00 99.10 98.21 100.00 100.00 99.53 98.47 100.00 97.83 99.23 97.87 98.66 100.00 99.57 98.67 98.10 98.05 95.43 100.00 95.94 99.38 99.28 96.72 100.00 99.58 99.19 98.67 98.79 98.90 100.00 100.00 97.19 99.53 99.09 98.62 99.10 98.51 100.00 99.53 100.00 99.25 99.58 97.84 100.00 99.57 K alternative_donor RpL30,I_chr2L_19008540_19008948,REI_chr2L_19008544_19008723,I_chr2L_19008544_19008918,snoRNA:Me28S-A2113 chr2L - chr2L_19008544_19008723;chr2L_19008544_19008948 chr2L_19008544_19008918 chr2L_19008444_19008543;chr2L_19008949_19009018 0.03 0.00 0.00 0.03 0.00 0.00 0.04 0.04 0.01 0.07 0.06 0.05 0.06 0.00 0.02 0.00 0.00 0.03 0.03 0.03 0.06 0.22 0.03 0.05 0.00 0.06 0.03 0.05 0.15 0.00 0.22 0.06 0.07 0.02 0.03 0.00 0.03 0.03 0.03 0.06 0.05 0.04 0.00 0.04 0.04 0.03 0.03 0.07 0.10 0.06 0.07 0.00 0.05 0.03 0.02 0.03 0.02 0.01 K jcn_only_AA larp,I_chr3R_24150390_24150531,F_chr3R_24151542_24153876,RI_chr3R_24160430_24161527 chr3R - chr3R_24150372_24150531 chr3R_24150390_24150531 chr3R_24150532_24150599;chr3R_24150290_24150371 0.00 0.54 0.00 0.00 1.75 0.79 0.38 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.62 1.56 0.00 0.36 0.00 0.80 0.00 0.45 1.35 0.72 0.00 0.81 0.00 1.08 0.29 0.00 0.48 0.35 0.00 1.82 0.58 0.00 0.00 0.37 0.00 0.00 0.00 0.36 3.53 1.40 0.00 0.55 0.32 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 K alternative_acceptor bt,I_chr4_792222_794646,I_chr4_794938_795011 chr4 + chr4_794938_795011 chr4_794938_795002 chr4_794838_794937;chr4_795012_795111 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 96.43 NA 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 90.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 95.24 NA 88.89 96.30 NA NA 100.00 100.00 NA 90.91 NA 94.74 100.00 92.86 NA 77.78 100.00 NA 100.00 87.50 NA 88.89 NA NA 100.00 NA NA 100.00 K jcn_only_AA CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806824_22809684 chr3R_22806824_22807254 chr3R_22806674_22806823 63.82 75.00 75.00 70.21 NA NA 80.95 65.75 57.81 NA NA 59.32 51.35 71.43 63.64 71.79 71.88 46.15 59.57 40.00 NA NA 64.00 60.00 NA NA NA NA NA NA 60.87 NA NA 60.00 NA NA NA NA NA NA NA 71.67 70.97 NA NA 42.86 NA 35.14 62.00 NA 76.00 NA NA NA 72.00 50.00 80.95 NA K jcn_only_AD cul-2,RI_chr2L_21657668_21657832,noncoding_4226,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21657777_21657832;chr2L_21657742_21657832 chr2L_21657668_21657832 chr2L_21657833_21657932;chr2L_21657659_21657667 54.76 48.00 48.28 24.44 28.57 47.37 54.55 43.66 37.17 66.04 54.76 38.68 22.50 37.21 45.90 36.88 33.33 58.97 43.86 42.96 47.92 88.95 81.15 57.97 82.28 45.31 79.37 90.32 84.17 80.99 41.77 57.73 82.84 46.67 80.49 75.50 60.00 68.75 69.33 75.63 91.22 50.54 25.00 80.16 76.29 72.03 60.71 75.22 41.82 66.12 64.71 51.61 43.14 64.84 41.46 55.43 54.00 45.57 K jcn_only_AD CG7231 chr2L + chr2L_7985434_7985552;chr2L_7985442_7985552 chr2L_7985494_7985552 chr2L_7985553_7985768;chr2L_7985425_7985433 2.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA 0.00 NA K jcn_only_AD CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20824602_20825271;chr2L_20824725_20825271;chr2L_20824631_20825271 chr2L_20824494_20825271 chr2L_20825272_20825366;chr2L_20824482_20824493 44.83 NA NA NA NA NA 48.39 44.83 56.00 NA 61.54 NA NA NA NA 61.54 NA 41.67 NA 41.94 60.87 NA NA NA NA NA NA NA NA NA 47.62 32.14 27.27 NA NA NA NA NA NA 16.44 NA 77.78 NA NA 57.89 18.92 NA 14.29 59.09 NA NA NA NA NA 33.33 NA NA 3.70 K intron_retention CG17233,RI_chr3L_20232898_20232962 chr3L - chr3L_20228535_20228601 chr3L_20228534_20228535;chr3L_20228601_20228602 chr3L_20228235_20228534;chr3L_20228602_20228777 0.00 0.00 7.69 0.00 NA 0.00 0.00 4.55 2.33 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 10.20 NA 7.14 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention l(3)82Fd,I_chr3R_1147660_1148709 chr3R - chr3R_1120578_1121362 chr3R_1120577_1120578;chr3R_1121362_1121363 chr3R_1120028_1120577;chr3R_1121363_1121517 47.37 40.91 36.00 73.68 36.00 42.86 20.00 62.50 47.22 41.67 35.29 51.52 57.14 75.00 40.00 47.37 47.37 41.18 55.56 58.54 47.83 50.00 40.00 39.29 75.00 45.00 50.00 NA 57.89 45.45 50.00 60.00 54.17 50.00 47.37 73.33 41.18 39.13 45.16 58.62 50.00 52.27 47.83 41.67 47.37 62.50 40.74 57.14 52.38 38.10 55.00 42.86 42.11 43.75 48.39 50.00 35.71 33.33 K intron_retention Ptp10D,CEF_chrX_11516219_11517862,I_chrX_11516225_11516345 chrX + chrX_11569060_11569363 chrX_11569059_11569060;chrX_11569363_11569364 chrX_11568078_11569059;chrX_11569364_11569672 2.62 0.00 0.00 4.00 NA 0.00 10.00 19.23 4.26 6.90 NA 0.00 NA 0.00 0.00 0.00 11.76 0.00 0.00 5.71 0.00 1.92 3.51 0.00 0.00 0.00 0.00 0.00 0.00 6.82 5.56 0.00 0.92 2.94 0.00 4.08 5.26 7.41 0.00 7.14 3.33 3.51 0.00 5.66 3.03 3.85 0.00 2.30 3.64 5.88 11.63 0.00 9.09 7.41 0.00 0.00 4.35 4.44 K intron_retention GlcAT-P,I_chr3L_11172482_11172633 chr3L - chr3L_11175744_11176733 chr3L_11175743_11175744;chr3L_11176733_11176734 chr3L_11175677_11175743;chr3L_11176734_11177238 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 2.94 NA 4.76 0.00 0.00 NA 0.00 NA NA NA NA 7.69 NA NA 5.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA 6.25 NA NA NA 0.00 NA NA NA K intron_retention sina chr3L + chr3L_16847053_16847119 chr3L_16847052_16847053;chr3L_16847119_16847120 chr3L_16846848_16847052;chr3L_16847120_16847625 94.44 92.00 95.45 97.14 100.00 90.00 88.10 97.14 92.59 84.21 100.00 93.62 96.00 100.00 95.65 92.86 100.00 100.00 92.59 96.43 92.31 56.25 92.59 94.12 100.00 100.00 100.00 93.75 95.45 86.96 96.15 92.31 92.31 93.02 95.65 91.30 94.74 94.12 94.44 90.48 100.00 97.50 100.00 100.00 94.74 96.00 80.95 100.00 94.23 83.33 86.67 94.44 80.00 80.00 96.67 93.75 100.00 96.30 K intron_retention eIF3-S10,I_chr3R_259324_259488 chr3R - chr3R_255891_255949 chr3R_255890_255891;chr3R_255949_255950 chr3R_255639_255890;chr3R_255950_257844 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.59 0.00 0.35 0.24 0.45 1.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG10263,I_chr2L_19581286_19581348 chr2L - chr2L_19581877_19582006 chr2L_19581904_19582006 chr2L_19582007_19582041;chr2L_19581776_19581876 0.81 0.00 0.00 1.18 0.00 0.00 0.00 1.56 0.66 0.00 1.64 0.93 2.86 0.00 0.00 0.00 4.55 0.00 2.33 1.38 0.00 0.00 0.00 2.65 0.00 0.00 1.08 2.97 0.00 3.33 0.00 1.45 3.03 1.61 0.00 0.00 0.72 0.84 1.76 1.64 1.45 1.47 0.00 0.00 1.85 0.81 0.96 3.53 0.00 1.03 1.01 0.00 0.00 0.75 2.17 0.00 0.93 1.39 K alternative_acceptor CG6845,I_chr3L_148414_148465,I_chr3L_148414_148475,I_chr3L_148414_148489 chr3L + chr3L_148414_148475;chr3L_148414_148461;chr3L_148414_148489 chr3L_148414_148465 chr3L_148350_148413;chr3L_148490_148555 5.56 5.56 0.00 5.56 7.14 5.88 6.06 5.71 2.33 0.00 0.00 7.69 13.33 0.00 5.26 8.00 0.00 0.00 0.00 3.03 20.00 0.00 9.09 5.88 10.00 0.00 5.88 14.29 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 4.35 0.00 6.25 0.00 7.69 0.00 12.50 0.00 11.76 8.82 5.88 7.14 6.67 0.00 15.38 0.00 6.67 6.25 7.69 K jcn_only_AD P58IPK,CG8312 chr3R + chr3R_5413355_5413718 chr3R_5413359_5413718 chr3R_5413719_5415303;chr3R_5413245_5413354 100.00 100.00 100.00 99.54 99.01 99.45 99.05 100.00 100.00 100.00 99.42 100.00 100.00 100.00 100.00 100.00 100.00 99.33 99.46 98.82 100.00 100.00 100.00 100.00 99.35 99.37 99.18 99.66 99.43 100.00 99.56 100.00 100.00 100.00 99.27 99.49 99.33 99.18 100.00 100.00 99.57 99.74 100.00 100.00 100.00 99.16 100.00 100.00 100.00 99.49 100.00 100.00 100.00 99.42 100.00 99.40 99.23 100.00 K jcn_only_AD AGO1,I_chr2R_9844856_9845327 chr2R - chr2R_9844856_9845466 chr2R_9844856_9845327 chr2R_9844756_9844855;chr2R_9845467_9845645 6.67 NA 9.76 7.32 NA 2.86 17.14 4.00 10.00 NA NA 6.49 12.50 3.70 4.26 7.94 NA 12.50 3.03 5.00 7.41 7.69 4.76 NA 18.18 8.33 NA NA 11.90 2.44 2.78 NA 6.67 2.13 11.11 10.34 NA NA NA 28.26 NA 6.67 8.33 NA NA 0.00 NA 9.78 4.11 NA NA 4.17 NA NA 4.44 NA NA 4.88 K intron_retention CG15771,F_chrX_5650884_5651894 chrX + chrX_5650238_5651894 chrX_5650237_5650238;chrX_5651894_5651895 chrX_5649671_5650237;chrX_5651895_5651994 5.38 3.12 2.44 14.00 1.69 2.78 5.36 8.79 4.00 0.00 4.17 3.49 5.00 9.43 7.27 5.88 4.69 9.52 7.27 8.82 6.45 0.00 3.51 4.17 0.00 0.00 8.93 18.18 21.88 8.00 3.92 11.76 4.40 5.38 2.00 0.00 6.25 6.12 5.66 5.34 2.27 6.31 6.52 4.76 3.77 7.81 5.26 8.82 10.13 6.00 7.69 0.00 8.57 2.94 7.25 5.26 7.41 10.00 K jcn_only_AA gcl,I_chr2R_4614277_4614332 chr2R + chr2R_4615283_4615355 chr2R_4615283_4615352 chr2R_4615214_4615282;chr2R_4615356_4615420 97.14 NA 92.59 97.44 100.00 92.00 96.43 100.00 100.00 NA 92.00 100.00 85.00 100.00 97.14 97.50 90.00 100.00 92.59 96.67 NA NA 100.00 100.00 NA 100.00 97.06 NA NA 95.00 100.00 NA 92.00 94.29 100.00 100.00 97.73 NA 97.37 96.43 NA 100.00 NA 96.00 100.00 95.65 100.00 95.65 95.24 NA 97.06 NA 100.00 93.55 96.77 NA 100.00 96.15 K intron_retention beta-Spec chrX + chrX_17562191_17562308 chrX_17562190_17562191;chrX_17562308_17562309 chrX_17562140_17562190;chrX_17562309_17562415 17.31 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.85 NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG9715 chr3L + chr3L_16842415_16842476 chr3L_16842414_16842415;chr3L_16842476_16842477 chr3L_16840261_16842414;chr3L_16842477_16842676 0.00 0.00 0.00 4.35 0.00 0.00 2.13 3.57 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 0.00 3.57 0.00 0.00 7.14 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.17 0.00 0.00 0.00 4.88 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 6.06 0.00 K alternative_donor sta chrX - chrX_1376949_1377290;chrX_1376949_1377143 chrX_1376949_1377164 chrX_1376851_1376948;chrX_1377291_1377379 0.30 0.73 0.26 0.15 0.29 0.15 0.35 0.15 0.25 0.83 0.23 0.31 0.15 0.19 0.20 0.28 0.26 0.22 0.19 0.15 0.24 1.17 1.78 1.17 0.53 0.12 1.17 0.43 0.81 0.30 1.13 0.29 0.12 0.21 0.97 1.02 0.57 0.89 1.15 0.12 0.42 0.28 0.18 0.19 0.24 0.43 0.94 0.20 0.31 0.86 2.03 0.57 0.26 2.67 0.22 0.81 1.01 0.38 K jcn_only_AD Mgat2,I_chr3R_25845406_25845472,I_chr3R_25845406_25846373 chr3R - chr3R_25845406_25845472;chr3R_25845406_25847371;chr3R_25845406_25846373 chr3R_25845406_25847670 chr3R_25845317_25845405;chr3R_25847671_25847898 3.33 3.70 0.00 3.85 NA NA NA NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 4.88 NA 6.45 2.63 0.00 NA NA 0.00 NA 17.39 5.00 NA NA NA 3.85 0.00 3.57 3.57 4.76 3.70 0.00 NA 3.33 NA 0.00 NA 0.00 0.00 10.81 4.00 NA 3.23 NA 0.00 NA NA 8.00 NA NA K jcn_only_AA crq,I_chr2L_452169_452576,I_chr2L_452737_452797 chr2L - chr2L_450879_452576 chr2L_452169_452576 chr2L_452577_452676;chr2L_450666_450878 0.00 0.00 0.95 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 1.41 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 2.38 0.00 0.00 0.00 0.00 2.38 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K cassette PH4alphaEFB,I_chr3R_26305150_26309614 chr3R + chr3R_26292097_26304840 chr3R_26292097_26299755;chr3R_26299951_26304840 chr3R_26299756_26299950 chr3R_26292028_26292096;chr3R_26304841_26304940 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.71 100.00 100.00 100.00 99.45 98.85 100.00 99.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.26 100.00 100.00 100.00 99.63 99.37 99.63 100.00 99.48 100.00 99.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.45 100.00 K intron_retention CycD,I_chrX_15803256_15803313 chrX - chrX_15803256_15803452 chrX_15803255_15803256;chrX_15803452_15803453 chrX_15803156_15803255;chrX_15803453_15803682 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA 100.00 NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA K intron_retention CG2064 chr2R + chr2R_3553915_3553978 chr2R_3553914_3553915;chr2R_3553978_3553979 chr2R_3553651_3553914;chr2R_3553979_3554135 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.27 0.00 0.00 0.47 0.60 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.21 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.33 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette mth chr3L - chr3L_343653_344106 chr3L_343653_343954;chr3L_344040_344106 chr3L_343955_344039 chr3L_343440_343652;chr3L_344107_344301 12.20 7.14 22.22 16.67 7.69 12.50 9.86 9.09 8.70 5.56 35.48 8.20 2.86 17.24 11.76 10.42 10.71 76.67 10.26 15.38 40.74 23.21 9.52 12.20 8.33 5.00 9.09 6.90 18.18 12.00 17.50 24.14 32.00 14.04 12.00 23.53 9.09 12.50 7.14 8.33 14.29 10.42 16.67 9.76 45.45 23.91 16.28 58.33 10.77 12.82 6.67 6.67 18.75 14.29 12.50 9.76 14.58 37.84 K intron_retention CG14995,I_chr3L_4095875_4097205,I_chr3L_4096047_4096903 chr3L - chr3L_4095123_4095199 chr3L_4095122_4095123;chr3L_4095199_4095200 chr3L_4094504_4095122;chr3L_4095200_4095293 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 14.29 0.00 NA NA NA 9.68 NA 0.00 9.09 0.00 NA NA NA NA 0.00 NA 0.00 7.14 0.00 12.50 NA 7.69 0.00 NA NA 0.00 0.00 0.00 NA 0.00 6.67 5.56 0.00 0.00 4.76 10.53 0.00 0.00 NA 0.00 0.00 4.76 0.00 0.00 K intron_retention mub,RI_chr3L_21901021_21901163,I_chr3L_21908756_21909179 chr3L + chr3L_21914088_21914141 chr3L_21914087_21914088;chr3L_21914141_21914142 chr3L_21914067_21914087;chr3L_21914142_21914427 80.00 79.41 85.71 86.67 95.00 95.24 90.48 80.77 81.33 62.50 93.75 82.98 92.86 77.78 76.00 79.17 92.86 80.95 NA 84.62 95.65 72.55 67.86 78.05 80.65 92.00 85.71 55.00 85.00 73.08 63.16 90.00 65.38 81.82 72.00 59.26 70.91 71.79 75.00 76.74 82.35 78.95 90.00 59.09 80.00 85.00 75.00 80.00 80.95 86.96 72.22 72.00 53.33 77.78 82.14 81.82 76.19 61.11 K alternative_acceptor CG8184,I_chrX_15620707_15620769 chrX + chrX_15620707_15620769 chrX_15620707_15620765 chrX_15620607_15620706;chrX_15620770_15620869 97.78 100.00 100.00 97.78 96.15 100.00 100.00 94.00 97.53 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 97.30 97.30 98.63 96.55 98.90 98.28 97.78 97.22 100.00 97.44 93.33 95.35 96.43 97.67 92.00 98.36 98.44 97.30 97.30 98.55 96.97 98.44 96.92 96.15 100.00 97.06 100.00 97.67 100.00 97.22 100.00 92.96 97.14 98.36 100.00 96.00 100.00 98.04 96.55 96.00 97.22 K cassette spas chr3R + chr3R_19865488_19866027 chr3R_19865488_19865632;chr3R_19865819_19866027 chr3R_19865633_19865818 chr3R_19865317_19865487;chr3R_19866028_19866194 93.10 95.24 94.12 75.86 100.00 94.12 66.67 96.30 89.47 85.71 92.31 96.97 91.67 100.00 89.47 95.00 90.91 100.00 94.44 97.44 83.33 76.32 96.55 92.59 94.12 86.67 91.67 93.75 73.53 86.21 93.33 95.24 88.89 96.43 86.96 94.74 96.88 95.45 100.00 93.10 91.30 92.86 86.67 92.00 97.06 92.59 89.47 87.23 96.67 93.33 96.15 88.89 100.00 81.25 95.00 88.24 93.33 88.57 K jcn_only_AD Nipped-B,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_616057_617208;chr2R_616057_616318;chr2R_616057_616311 chr2R_616057_616283 chr2R_615957_616056;chr2R_617209_617308 34.48 25.81 25.93 37.50 26.92 50.00 39.74 34.95 32.54 NA 39.29 21.93 28.07 39.06 29.73 43.12 34.48 45.16 42.11 33.33 31.25 26.92 47.14 31.71 41.82 27.50 40.26 45.95 22.22 34.48 38.60 NA 24.00 34.91 34.88 55.77 31.82 41.94 38.24 36.67 NA 27.37 21.21 32.20 NA NA NA 37.14 31.11 NA 31.88 38.46 NA NA 29.03 NA NA NA K intron_retention CG7039,I_chrX_9003790_9007675 chrX + chrX_9001271_9001337 chrX_9001270_9001271;chrX_9001337_9001338 chrX_9001127_9001270;chrX_9001338_9001590 5.56 9.38 5.56 25.00 5.56 0.00 6.06 5.26 3.92 NA 0.00 0.00 NA 0.00 4.76 5.56 0.00 0.00 0.00 4.41 0.00 26.67 8.33 10.64 17.65 22.58 8.16 21.05 35.48 8.00 15.79 2.86 15.38 2.38 13.16 34.62 8.77 5.00 0.00 4.26 15.00 5.00 0.00 19.05 3.23 15.38 6.12 7.41 8.93 10.71 6.82 0.00 0.00 0.00 0.00 8.33 6.56 0.00 K cassette CG11009,I_chr3L_12844823_12845526 chr3L + chr3L_12844254_12845526 chr3L_12844254_12844408;chr3L_12844823_12845526 chr3L_12844409_12844822 chr3L_12844015_12844253;chr3L_12845527_12845621 98.10 99.24 97.20 97.79 100.00 98.91 99.28 98.61 97.28 100.00 97.22 97.85 95.92 98.68 96.00 97.83 95.12 98.89 98.84 99.43 98.91 96.09 96.92 97.14 95.57 98.81 95.83 98.34 100.00 98.59 94.64 96.88 98.30 96.91 96.72 97.02 98.34 97.10 97.92 98.08 95.90 99.29 97.44 96.13 99.61 98.11 98.58 98.51 98.10 96.62 97.99 99.05 99.31 98.37 97.56 98.11 99.57 98.18 K intron_retention Rcp chrX + chrX_16778940_16778996 chrX_16778939_16778940;chrX_16778996_16778997 chrX_16778897_16778939;chrX_16778997_16779049 100.00 93.33 100.00 100.00 94.12 100.00 100.00 97.22 97.22 100.00 100.00 96.67 93.75 100.00 100.00 96.88 100.00 95.00 100.00 100.00 90.91 100.00 100.00 95.00 100.00 95.24 95.65 100.00 100.00 94.12 100.00 100.00 88.89 97.14 100.00 100.00 100.00 100.00 100.00 96.55 100.00 94.29 100.00 100.00 95.00 96.43 94.12 96.77 97.30 94.44 100.00 90.91 100.00 100.00 100.00 100.00 100.00 98.28 K intron_retention Moe,I_chrX_8774434_8791759 chrX - chrX_8769894_8770605 chrX_8769893_8769894;chrX_8770605_8770606 chrX_8769127_8769893;chrX_8770606_8770785 0.00 0.00 0.35 0.07 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.07 0.15 0.00 0.00 0.28 0.00 0.00 0.00 0.06 0.00 0.00 0.12 0.00 0.00 0.00 0.14 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.05 0.00 0.00 0.26 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Gp93,E_chr3R_23774640_23777523 chr3R + chr3R_23774796_23774892 chr3R_23774795_23774796;chr3R_23774892_23774893 chr3R_23774706_23774795;chr3R_23774893_23774975 0.19 0.00 0.00 0.28 0.00 0.00 0.19 0.15 0.27 0.31 0.00 0.13 0.54 0.00 0.00 0.00 0.22 0.48 0.00 0.25 0.23 0.58 0.28 0.29 0.72 0.00 0.57 1.07 3.09 0.00 0.00 0.00 0.59 0.00 0.62 0.00 0.33 0.19 0.25 0.68 0.84 0.20 0.00 0.17 0.74 0.53 0.00 1.36 0.14 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.40 0.00 K intron_retention mthl10 chr3L - chr3L_335170_335244 chr3L_335169_335170;chr3L_335244_335245 chr3L_335101_335169;chr3L_335245_335300 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.77 1.12 0.00 0.00 1.98 3.92 0.00 0.00 1.64 5.26 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 3.53 0.00 1.08 0.00 2.44 0.00 0.00 0.00 0.00 1.80 NA 0.00 0.00 NA 0.00 1.61 0.00 0.00 0.00 K jcn_only_AA sgg,I_chrX_2529065_2563945,I_chrX_2536127_2563666,I_chrX_2552903_2553180,I_chrX_2555127_2563666,I_chrX_2561695_2562135,I_chrX_2563342_2563666,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2536127_2539408;chrX_2536127_2563945 chrX_2536127_2563666 chrX_2536027_2536126 2.02 0.00 1.39 3.06 5.08 1.47 2.44 1.41 0.88 5.45 3.77 2.02 4.84 3.23 0.00 1.56 2.00 1.92 0.00 3.55 2.04 3.51 4.12 0.00 0.00 2.90 2.22 6.45 1.56 2.80 1.96 0.00 0.93 1.52 3.51 0.93 2.47 2.94 2.94 0.74 6.45 0.00 1.67 1.30 10.67 3.77 2.47 1.71 2.00 2.27 1.19 3.03 5.26 0.00 0.00 4.65 1.61 2.80 K alternative_donor oho23B,I_chr2L_2856176_2856244,I_chr2L_2856573_2856630,RI_chr2L_2856673_2856772 chr2L + chr2L_2856288_2856376 chr2L_2856306_2856376 chr2L_2856377_2856568;chr2L_2856279_2856287 99.89 99.94 99.96 99.71 99.87 99.80 99.83 99.78 99.89 99.90 99.85 99.86 99.87 99.90 99.93 100.00 99.67 99.96 99.95 99.91 99.96 100.00 99.91 99.91 99.89 99.80 99.85 99.84 99.94 99.82 100.00 99.77 99.87 99.87 99.82 99.96 99.90 99.89 99.85 99.88 99.89 99.94 99.78 99.91 99.84 99.90 99.91 99.96 99.88 99.90 99.89 99.94 99.86 99.84 99.90 99.88 99.85 99.95 N alternative_donor Hcf,I_chr4_391984_392875 chr4 + chr4_380985_381212;chr4_380911_381212;chr4_380646_381212;chr4_380607_381212 chr4_380602_381212 chr4_381213_381632;chr4_380600_380601 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 20.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 K cassette CG6043,I_chr2L_13267973_13268086 chr2L + chr2L_13274377_13275587 chr2L_13274377_13274690;chr2L_13274851_13275587 chr2L_13274691_13274850 chr2L_13274310_13274376;chr2L_13275588_13275628 100.00 NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA NA 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 NA NA 91.67 100.00 NA 100.00 NA NA 100.00 100.00 NA K alternative_acceptor CG5554,gbb chr2R + chr2R_19733464_19733650 chr2R_19733464_19733629 chr2R_19733289_19733463;chr2R_19733651_19734547 0.65 1.03 0.52 0.90 0.65 0.00 0.74 0.48 0.36 0.99 0.00 0.74 0.00 0.00 0.50 0.69 0.00 0.00 0.83 1.11 0.73 0.32 0.55 0.51 2.04 1.27 0.00 0.00 1.45 0.60 0.46 0.63 1.13 0.92 0.70 2.10 0.47 0.67 1.61 1.01 1.22 0.28 1.89 0.66 2.27 0.51 1.25 0.99 1.12 0.54 0.97 0.00 0.58 0.53 0.00 0.50 0.42 0.81 K intron_retention CG3835,I_chrX_2035640_2035931,I_chrX_2036036_2037024 chrX + chrX_2035640_2037024 chrX_2035639_2035640;chrX_2037024_2037025 chrX_2035540_2035639;chrX_2037025_2037124 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9775,I_chr3R_464132_464277,I_chr3R_464132_464367,I_chr3R_466059_466296 chr3R - chr3R_464132_464265 chr3R_464131_464132;chr3R_464265_464266 chr3R_464032_464131;chr3R_464266_464561 7.38 7.69 8.76 3.78 9.28 10.08 9.27 12.96 7.47 4.24 4.29 12.28 11.96 9.01 10.34 11.18 7.14 6.48 10.92 4.12 10.00 6.64 7.87 8.22 4.76 13.79 11.40 13.97 1.64 6.05 6.19 8.85 6.67 11.11 7.04 6.06 5.68 6.84 5.35 7.03 7.33 8.62 14.10 6.20 6.25 7.80 6.19 7.24 9.68 7.38 6.55 9.28 4.96 6.25 11.56 6.43 6.93 7.52 K jcn_only_AA CG4133 chr2L + chr2L_456898_456972 chr2L_456898_456954 chr2L_456797_456897;chr2L_456973_457338 4.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.55 NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention l(1)G0196,I_chrX_21900456_21904601 chrX + chrX_21898150_21898203 chrX_21898149_21898150;chrX_21898203_21898204 chrX_21897878_21898149;chrX_21898204_21898384 4.55 5.13 0.00 22.81 3.23 0.00 6.06 3.77 8.57 0.00 4.76 8.47 0.00 0.00 4.44 14.89 5.88 3.23 11.43 2.22 9.09 19.35 15.38 10.00 0.00 13.89 24.44 16.67 25.00 0.00 7.69 NA 4.55 8.47 12.50 0.00 2.38 0.00 0.00 10.71 NA 4.65 10.81 0.00 0.00 7.69 0.00 0.00 5.26 0.00 17.07 0.00 0.00 0.00 8.70 0.00 0.00 0.00 K intron_retention Mes2,CEF_chr3L_22939285_22939369 chr3L + chr3L_22939671_22943631 chr3L_22939670_22939671;chr3L_22943631_22943632 chr3L_22939370_22939670;chr3L_22943632_22944346 0.00 0.42 0.93 1.00 0.00 0.00 0.00 0.58 0.58 0.00 0.00 0.52 0.55 0.00 0.91 0.00 1.23 0.44 1.81 0.00 0.00 0.00 0.00 0.00 0.00 0.54 1.19 0.75 0.00 0.00 0.00 0.00 0.33 0.63 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG11686 chr3R + chr3R_9086141_9087326 chr3R_9086141_9087299 chr3R_9086072_9086140;chr3R_9087327_9087492 0.00 NA 0.00 NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention CG32627,CG32628 chrX + chrX_13607393_13607456 chrX_13607392_13607393;chrX_13607456_13607457 chrX_13607234_13607392;chrX_13607457_13607626 88.89 NA NA NA NA NA 100.00 NA 100.00 NA NA 88.89 NA NA NA 88.89 NA 88.89 NA 86.96 NA NA NA NA NA NA NA NA NA NA 88.89 NA NA 85.71 NA NA NA NA NA 81.82 NA 83.33 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K mutually_exclusive CG5191,E_chr3R_16391739_16398166,CG5412 chr3R + chr3R_16387134_16396323,chr3R_16396372_16396811 chr3R_16387134_16392150,chr3R_16392332_16396811 chr3R_16396324_16396371 chr3R_16392151_16392331 chr3R_16387079_16387133;chr3R_16396812_16398636 0.00 NA NA NA NA 0.00 NA 0.00 16.67 NA 0.00 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 K intron_retention Rtnl1,I_chr2L_4994995_4995154,I_chr2L_4994995_5006383,RE_chr2L_4994997_5008180,I_chr2L_4999312_5000248,I_chr2L_4999386_4999670,I_chr2L_4999386_5000201,I_chr2L_5004757_5006383,I_chr2L_5004775_5006231,I_chr2L_5004775_5006381,I_chr2L_5004775_5006392,I_chr2L_5027222_5028118 chr2L - chr2L_4994995_5004613 chr2L_4994994_4994995;chr2L_5004613_5004614 chr2L_4994897_4994994;chr2L_5004614_5004774 40.00 NA NA NA NA 35.71 NA 25.00 50.00 NA NA 33.33 45.45 NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA 37.50 NA NA NA NA NA 50.00 NA NA NA K jcn_only_AD CG13771 chr2L - chr2L_6663068_6663131;chr2L_6663068_6663127 chr2L_6663068_6663123 chr2L_6662854_6663067;chr2L_6663132_6663374 1.61 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 3.23 NA NA NA NA NA 3.70 NA 0.00 NA NA NA NA NA NA NA NA NA NA K intron_retention Stat92E,att-ORFB chr3R - chr3R_16363186_16364174 chr3R_16363185_16363186;chr3R_16364174_16364175 chr3R_16362916_16363185;chr3R_16364175_16364266 12.13 NA 7.41 NA NA 6.67 25.00 10.53 17.24 NA 0.00 8.82 NA 14.29 NA 17.24 5.26 NA NA 5.26 5.26 28.00 8.33 0.00 NA 15.38 37.50 50.00 NA 16.67 16.67 NA NA 12.50 14.29 9.09 NA 14.29 11.76 10.81 NA 21.88 NA 14.29 NA NA 0.00 7.69 17.86 NA 3.45 NA 6.67 NA 15.79 NA 9.52 23.08 K jcn_only_AD CG13510,F_chr2R_18548367_18550224,R_chr2R_18548408_18548573,I_chr2R_18551419_18551493 chr2R + chr2R_18548367_18548573 chr2R_18548408_18548573 chr2R_18548574_18548673;chr2R_18548308_18548366 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.17 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG4004,RI_chrX_12640753_12640901 chrX + chrX_12638983_12640901 chrX_12638982_12638983;chrX_12640901_12640902 chrX_12638341_12638982;chrX_12640902_12641001 0.00 0.00 0.00 0.00 0.00 4.35 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.67 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention fwd,RI_chr3L_319514_319746 chr3L - chr3L_319514_319746 chr3L_319513_319514;chr3L_319746_319747 chr3L_319414_319513;chr3L_319747_319846 94.29 92.31 88.89 100.00 100.00 93.33 95.45 96.77 91.18 92.86 NA 85.29 80.00 100.00 91.67 95.24 94.74 91.67 94.44 93.75 90.91 94.74 97.30 100.00 100.00 95.00 95.24 100.00 94.74 82.35 90.00 90.00 94.44 88.89 92.86 100.00 96.97 100.00 88.24 90.32 87.50 91.89 87.50 92.86 NA 100.00 NA 93.33 94.29 NA 94.44 94.44 NA NA 95.65 NA NA 94.12 K intron_retention CG7971,I_chr3L_1659363_1659845,I_chr3L_1667736_1667806 chr3L - chr3L_1660858_1661108 chr3L_1660857_1660858;chr3L_1661108_1661109 chr3L_1660809_1660857;chr3L_1661109_1661165 88.89 88.89 NA 91.67 NA 90.91 96.00 82.35 92.31 NA NA 90.48 95.83 NA 88.89 87.50 NA NA 87.50 91.67 NA NA NA 88.89 88.89 92.31 90.00 76.92 NA NA NA NA NA 93.75 NA NA NA NA NA 63.64 50.00 88.89 90.00 NA NA 81.82 NA NA 100.00 69.23 NA NA NA NA NA 88.89 80.00 80.00 K intron_retention TepII,I_chr2L_7696207_7698724,I_chr2L_7697158_7697976 chr2L - chr2L_7695972_7696027 chr2L_7695971_7695972;chr2L_7696027_7696028 chr2L_7695073_7695971;chr2L_7696028_7696206 0.00 0.00 0.00 4.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 6.25 0.00 0.00 1.08 0.00 6.67 1.10 0.00 0.00 0.00 0.00 0.00 1.67 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Amun,I_chrX_11607839_11608272,I_chrX_11607842_11608105,I_chrX_11607842_11608125,RI_chrX_11607842_11608272 chrX - chrX_11607722_11607787;chrX_11607631_11607787 chrX_11607718_11607787 chrX_11607788_11607838;chrX_11606802_11607630 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 1.10 2.22 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 1.79 1.21 0.00 0.00 1.41 1.39 0.00 2.00 1.39 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.99 1.61 0.79 0.00 0.00 0.00 0.00 0.00 1.82 0.00 1.67 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA exba,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1425813_1426009;chr3R_1425087_1426009 chr3R_1425890_1426009 chr3R_1426010_1426024 43.75 NA NA NA NA NA NA 55.00 37.04 NA NA NA NA NA NA 78.26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 45.00 NA 40.00 NA NA 43.75 31.82 NA NA NA NA NA NA NA NA K intron_retention yki chr2R - chr2R_19954240_19954685 chr2R_19954239_19954240;chr2R_19954685_19954686 chr2R_19954084_19954239;chr2R_19954686_19954777 1.37 0.00 2.38 0.00 2.13 0.00 0.00 2.99 4.17 0.00 0.00 1.71 2.35 1.28 1.37 2.48 4.55 2.67 1.49 1.95 2.27 1.14 1.10 0.00 4.62 0.00 0.96 4.17 0.00 0.00 0.94 2.27 2.04 4.26 0.00 1.85 0.00 0.00 2.35 1.42 3.77 3.01 0.00 1.00 0.00 1.21 3.03 1.54 1.85 2.44 2.41 1.35 0.00 0.00 0.00 0.00 0.00 1.44 K cassette Sema-1a,R_chr2L_8564297_8610230,E_chr2L_8622170_8631026 chr2L + chr2L_8663252_8666035;chr2L_8664221_8666035 chr2L_8663252_8665445,chr2L_8664221_8665445;chr2L_8665519_8666035 chr2L_8665446_8665518 chr2L_8663198_8663251;chr2L_8666036_8666047 90.00 NA NA NA NA NA 100.00 NA NA 94.74 NA 85.71 NA NA NA NA NA NA NA 90.00 NA 91.43 100.00 NA 88.89 NA NA 100.00 82.76 87.50 NA NA 87.50 NA NA 92.86 90.91 87.50 90.00 92.86 100.00 85.71 NA 75.00 85.71 NA NA 95.00 NA NA 100.00 100.00 NA NA NA NA 83.33 87.50 K alternative_donor CG40228,noncoding_14406,RI_chr3LHet_2190419_2190470 chr3LHet - chr3LHet_2190419_2190556;chr3LHet_2190419_2190548;chr3LHet_2190419_2190470;chr3LHet_2190419_2190561 chr3LHet_2190419_2190563 chr3LHet_2190319_2190418;chr3LHet_2190564_2190570 14.29 25.00 21.21 18.42 10.00 7.14 13.43 16.47 10.42 NA 0.00 17.46 12.50 26.67 21.43 18.46 14.29 26.92 6.52 10.29 13.33 0.00 16.67 14.29 5.56 17.65 17.14 14.29 31.82 6.67 11.36 15.38 33.33 11.11 13.95 11.76 15.38 6.67 9.52 9.30 9.62 17.65 11.76 10.00 17.14 16.87 17.14 16.28 18.10 16.67 21.28 5.56 19.23 10.00 18.42 21.95 12.50 14.06 N cassette Pvr,I_chr2L_8226604_8228082,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8226607_8228493 chr2L_8226607_8228082;chr2L_8228258_8228493 chr2L_8228083_8228257 chr2L_8226458_8226606;chr2L_8228494_8229011 96.18 90.38 100.00 92.31 100.00 100.00 96.04 96.18 94.07 100.00 100.00 95.74 86.92 100.00 95.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 89.24 87.36 91.84 100.00 85.41 100.00 100.00 90.30 84.76 100.00 90.62 96.31 92.52 93.20 89.81 89.40 89.71 89.22 88.89 94.17 100.00 95.24 100.00 100.00 100.00 100.00 95.49 85.06 93.30 91.18 100.00 100.00 96.38 100.00 100.00 100.00 K intron_retention CG9147,I_chr2L_6066313_6066378 chr2L + chr2L_6066207_6066269 chr2L_6066206_6066207;chr2L_6066269_6066270 chr2L_6066198_6066206;chr2L_6066270_6066312 90.91 NA NA 90.00 NA NA 85.71 90.91 100.00 NA NA 84.62 NA 90.91 NA 90.00 NA NA NA 92.31 NA NA NA NA NA NA NA NA NA NA NA NA NA 90.91 NA 100.00 NA NA NA 88.89 NA 91.67 NA NA NA NA NA NA 100.00 NA NA NA NA 88.89 NA NA NA NA K jcn_only_AD CG4119 chrX + chrX_5560355_5560409;chrX_5560347_5560409 chrX_5560351_5560409 chrX_5560410_5560501;chrX_5560114_5560346 9.09 6.12 NA NA NA NA NA NA 2.63 7.69 NA 5.00 NA NA NA NA 10.00 11.11 NA 5.88 15.00 14.29 6.00 12.73 13.89 NA 5.56 12.50 NA 5.26 NA 13.51 11.90 14.81 0.00 5.00 14.43 9.38 10.94 11.32 8.70 14.89 NA 4.26 16.28 10.71 9.38 6.38 4.55 17.02 8.33 9.09 8.57 14.71 7.41 4.88 9.09 4.55 K alternative_acceptor mei-P26 chrX + chrX_9063296_9063549 chrX_9063296_9063498 chrX_9061191_9063295;chrX_9063550_9064018 93.33 100.00 100.00 100.00 100.00 86.67 85.71 100.00 95.92 91.67 93.33 96.43 100.00 93.75 88.89 100.00 92.86 92.86 100.00 93.10 92.31 92.86 93.10 91.67 100.00 93.75 85.71 100.00 100.00 90.00 100.00 NA 88.89 96.30 87.50 100.00 100.00 93.75 100.00 91.67 85.71 91.43 94.12 93.75 NA 90.00 NA 92.00 96.15 87.50 89.47 93.33 75.00 NA 95.83 NA NA 88.89 K intron_retention Ge-1,Reps,I_chr2L_11105525_11105656 chr2L - chr2L_11095878_11095952 chr2L_11095877_11095878;chr2L_11095952_11095953 chr2L_11095264_11095877;chr2L_11095953_11096475 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA l(1)G0196,I_chrX_21900456_21904601 chrX + chrX_21898150_21898203;chrX_21898150_21898215 chrX_21898150_21898212 chrX_21897878_21898149;chrX_21898216_21898384 20.39 12.33 22.37 14.44 19.70 19.72 21.79 20.79 22.22 21.95 19.05 27.20 29.17 26.76 19.80 20.93 25.71 12.90 18.92 22.33 9.43 25.00 21.84 25.42 30.00 19.67 16.67 13.33 26.09 16.00 26.13 NA 10.87 22.32 15.38 20.83 21.28 20.00 21.13 27.42 30.00 15.62 13.33 24.24 16.67 17.86 27.27 18.75 19.33 16.00 12.31 11.54 22.58 19.35 27.27 21.95 19.57 17.14 K intron_retention RpL23A,E_chr3L_1667550_1667808,I_chr3L_1667736_1667806 chr3L - chr3L_1667736_1667806 chr3L_1667735_1667736;chr3L_1667806_1667807 chr3L_1667636_1667735;chr3L_1667807_1667906 97.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 94.44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20824494_20825664;chr2L_20824494_20826632;chr2L_20824494_20825271 chr2L_20824494_20825470 chr2L_20824482_20824493 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA 3.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.85 NA NA 0.00 NA NA NA 5.00 NA NA NA NA NA NA NA NA NA K cassette rdgB chrX + chrX_13664176_13665160 chrX_13664176_13664798;chrX_13664838_13665160 chrX_13664799_13664837 chrX_13664112_13664175;chrX_13665161_13665236 6.25 NA NA NA 0.00 NA 0.00 17.65 4.17 NA NA 28.57 NA 0.00 NA NA NA NA 0.00 3.85 NA 2.86 4.76 NA NA NA 12.50 NA NA NA NA NA 14.29 14.29 NA NA 12.50 6.67 5.56 13.33 NA 5.00 14.29 NA NA NA NA NA 8.33 NA 6.67 NA NA NA 6.25 NA 5.88 NA K alternative_donor CG2889 chrX + chrX_10368119_10368821 chrX_10368658_10368821 chrX_10368822_10369173;chrX_10368086_10368118 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.19 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG15019 chr3L - chr3L_4405616_4405784 chr3L_4405615_4405616;chr3L_4405784_4405785 chr3L_4405053_4405615;chr3L_4405785_4405976 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Atet chr2L + chr2L_4334105_4341883 chr2L_4334105_4336500;chr2L_4336958_4341883 chr2L_4336501_4336957 chr2L_4333926_4334104;chr2L_4341884_4342198 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Lap1 chr2R + chr2R_10823524_10823596;chr2R_10823524_10823599 chr2R_10823524_10823631 chr2R_10823191_10823523;chr2R_10823632_10823803 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 NA NA 5.00 0.00 NA 3.45 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 K intron_retention CG7766,I_chrX_8993495_8994545,I_chrX_8991338_8991387 chrX - chrX_8989042_8989098 chrX_8989041_8989042;chrX_8989098_8989099 chrX_8988444_8989041;chrX_8989099_8989366 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG2857,RpL41 chr2R - chr2R_20791113_20791220 chr2R_20791112_20791113;chr2R_20791220_20791221 chr2R_20790813_20791112;chr2R_20791221_20791311 0.01 0.00 0.00 0.03 0.00 0.01 0.00 0.04 0.01 0.00 0.00 0.02 0.02 0.02 0.04 0.01 0.03 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.05 0.09 0.03 0.00 0.00 0.01 0.00 0.02 0.02 0.00 0.00 0.02 0.00 0.02 0.00 0.03 0.00 0.00 0.01 0.02 0.00 0.02 0.05 0.03 0.02 0.00 0.03 0.04 0.01 0.01 0.02 0.02 K intron_retention CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_239517_240516 chr4_239516_239517;chr4_240516_240517 chr4_239079_239516;chr4_240517_240654 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 1.54 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA MED31,CG18271,I_chr3R_468381_468483,CE_chr3R_468381_468504 chr3R + chr3R_468381_468483 chr3R_468381_468472 chr3R_468291_468380;chr3R_468484_468514 100.00 100.00 100.00 99.14 100.00 100.00 100.00 100.00 100.00 98.25 98.18 98.69 98.80 100.00 100.00 100.00 100.00 98.48 100.00 97.32 98.75 99.16 99.32 98.26 100.00 100.00 98.11 100.00 100.00 100.00 100.00 99.00 100.00 100.00 100.00 98.86 96.84 100.00 100.00 99.43 100.00 100.00 98.28 97.60 100.00 98.82 99.24 98.68 99.30 100.00 97.90 100.00 98.80 100.00 99.05 100.00 98.73 99.13 K alternative_donor CDase chr3R + chr3R_26286512_26288536;chr3R_26286617_26288536;chr3R_26286613_26288536;chr3R_26286631_26288536 chr3R_26286611_26288536 chr3R_26288537_26288691;chr3R_26286221_26286511 7.14 NA NA 12.50 NA NA NA NA 0.00 0.00 NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 7.69 7.69 10.00 NA 7.14 NA 0.00 NA NA NA 9.09 0.00 12.50 0.00 NA NA 5.56 3.57 NA NA NA 11.11 NA 7.14 NA 12.50 0.00 7.69 11.11 0.00 7.69 9.09 NA 0.00 NA 10.00 K alternative_donor jing,I_chr2R_2505678_2506068 chr2R + chr2R_2501376_2501609;chr2R_2501545_2501609;chr2R_2501388_2501609;chr2R_2501514_2501609 chr2R_2501482_2501609 chr2R_2501610_2503238;chr2R_2501342_2501375 0.00 NA NA NA NA NA NA NA 0.00 NA NA 16.67 NA NA 0.00 0.00 NA NA NA 8.33 NA 9.09 0.00 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 14.29 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA K cassette Myo61F,mtacp1,I_chr3L_1330291_1331279,RI_chr3L_1330929_1331041,l(3)02640 chr3L + chr3L_1330291_1331279 chr3L_1330291_1331041;chr3L_1331171_1331279 chr3L_1331042_1331170 chr3L_1330191_1330290;chr3L_1331280_1331379 100.00 100.00 100.00 99.49 100.00 99.52 100.00 100.00 99.80 100.00 100.00 99.75 100.00 99.45 100.00 100.00 100.00 100.00 100.00 99.81 100.00 100.00 99.68 100.00 100.00 100.00 100.00 100.00 100.00 99.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.78 100.00 100.00 99.79 99.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.62 100.00 100.00 100.00 K cassette MED31,CG18271,CE_chr3R_468381_468504 chr3R + chr3R_467731_468290 chr3R_467731_468005;chr3R_468145_468290 chr3R_468006_468144 chr3R_467702_467730;chr3R_468291_468380 96.08 96.97 97.62 83.64 88.46 100.00 81.63 90.32 95.88 90.32 86.84 98.67 86.05 97.22 90.48 98.46 92.00 97.22 96.97 94.26 89.47 97.37 95.38 96.88 100.00 94.12 85.71 100.00 97.62 98.00 97.73 95.92 90.70 96.08 97.30 98.48 90.38 88.57 96.00 96.12 98.18 97.01 96.30 96.49 96.67 99.02 95.65 95.51 94.87 96.08 98.11 86.67 98.18 94.92 97.83 92.59 91.67 93.70 K intron_retention CG32425,I_chr3L_20504930_20505036 chr3L + chr3L_20506176_20506237 chr3L_20506175_20506176;chr3L_20506237_20506238 chr3L_20505621_20506175;chr3L_20506238_20507177 0.00 0.00 0.00 8.33 NA NA NA 0.00 8.33 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 8.33 0.00 0.00 0.00 NA 10.53 NA 7.69 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 5.71 0.00 0.00 0.00 2.56 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 K alternative_donor CG4293,RI_chrX_423385_423664,I_chrX_423385_423676 chrX - chrX_423385_423664;chrX_423385_423442 chrX_423385_423676 chrX_423285_423384;chrX_423677_423764 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 10.00 10.00 0.00 0.00 0.00 9.09 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.11 0.00 0.00 0.00 0.00 0.00 K intron_retention CG42348,I_chr3L_20149990_20151579 chr3L - chr3L_20146436_20146568 chr3L_20146435_20146436;chr3L_20146568_20146569 chr3L_20146264_20146435;chr3L_20146569_20147244 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.31 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 0.00 1.25 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG8831 chr2R - chr2R_8318494_8318588 chr2R_8318518_8318588 chr2R_8318589_8318657;chr2R_8318387_8318493 100.00 100.00 100.00 100.00 100.00 NA 91.67 100.00 100.00 NA NA 100.00 NA 100.00 100.00 87.50 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA NA 90.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA K intron_retention nes chr3L - chr3L_19253331_19253609 chr3L_19253330_19253331;chr3L_19253609_19253610 chr3L_19253215_19253330;chr3L_19253610_19253779 100.00 NA 88.89 90.91 100.00 NA 94.12 88.89 92.31 NA NA 100.00 NA 100.00 90.91 92.86 NA NA 92.31 93.33 NA NA 100.00 NA 100.00 100.00 100.00 100.00 92.86 NA 90.00 NA NA 92.86 NA 100.00 NA NA NA 100.00 NA 90.00 NA NA NA 100.00 NA 100.00 93.33 NA NA 100.00 NA 100.00 100.00 NA NA NA K jcn_only_AD RpS7,E_chr3R_26032339_26034298 chr3R - chr3R_26034380_26034638 chr3R_26034380_26034635 chr3R_26034299_26034379;chr3R_26034639_26034688 0.07 0.68 0.31 0.28 0.00 0.95 0.00 0.12 0.00 0.00 0.00 0.34 0.00 0.00 1.59 0.00 0.00 0.56 1.26 0.27 0.00 0.43 0.00 0.00 0.00 0.44 0.00 0.00 0.69 1.04 0.00 0.24 0.28 0.57 0.96 0.77 0.00 0.00 0.00 0.66 0.27 0.31 0.00 0.00 0.23 0.00 0.00 0.16 1.00 0.00 0.00 0.00 0.08 0.00 0.47 0.00 0.62 0.07 K intron_retention Btk29A,I_chr2L_8262681_8277370,I_chr2L_8298341_8300884 chr2L - chr2L_8261147_8261323 chr2L_8261146_8261147;chr2L_8261323_8261324 chr2L_8260909_8261146;chr2L_8261324_8261330 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG3925 chr3R + chr3R_5875040_5875111 chr3R_5875039_5875040;chr3R_5875111_5875112 chr3R_5874960_5875039;chr3R_5875112_5875396 9.09 0.00 NA 37.50 NA NA 0.00 9.09 13.21 NA NA 4.55 5.88 NA NA 3.45 0.00 NA 5.88 6.00 NA 25.00 24.00 13.04 NA NA 26.67 6.67 25.00 0.00 38.10 NA 26.67 12.00 0.00 5.56 0.00 13.04 9.09 7.27 NA 18.18 NA 4.35 NA 17.65 10.53 23.53 14.29 0.00 4.76 NA 14.29 NA 10.53 8.33 NA NA K alternative_donor Hr39,I_chr2L_21256047_21256260 chr2L + chr2L_21237347_21238280;chr2L_21237385_21238280;chr2L_21237421_21238280;chr2L_21237364_21238280;chr2L_21237397_21238280 chr2L_21237405_21238280 chr2L_21238281_21238529;chr2L_21237247_21237346 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 7.69 12.50 3.57 0.00 9.09 0.00 2.63 10.00 12.50 0.00 0.00 7.69 0.00 5.00 0.00 14.29 0.00 0.00 NA 9.09 0.00 6.25 0.00 NA 0.00 7.14 3.33 NA 0.00 0.00 0.00 25.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K multi_cassette cals,I_chr4_1139644_1142084,RI_chr4_1141233_1142084 chr4 - chr4_1139644_1142084 chr4_1139644_1140562;chr4_1140674_1140731;chr4_1141233_1141284;chr4_1141428_1142084 chr4_1140563_1140673;chr4_1140732_1141232;chr4_1141285_1141427 chr4_1139544_1139643;chr4_1142085_1142184 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 95.83 100.00 97.73 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 50.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 K alternative_acceptor PDCD-5 chr3L - chr3L_16224502_16224573 chr3L_16224517_16224573 chr3L_16224574_16224642;chr3L_16224436_16224501 100.00 100.00 100.00 100.00 100.00 100.00 98.73 100.00 100.00 98.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.55 100.00 100.00 100.00 100.00 99.12 98.75 100.00 99.06 100.00 100.00 100.00 100.00 99.10 99.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA RpL15 chr3LHet + chr3LHet_2397820_2398049;chr3LHet_2397820_2398127 chr3LHet_2397820_2398143 chr3LHet_2397802_2397819;chr3LHet_2398144_2398454 1.56 NA 0.00 0.83 NA 3.23 NA 0.89 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 3.03 1.74 2.00 NA 3.31 NA NA NA 2.53 NA 8.27 1.38 1.00 0.79 3.69 2.68 1.25 2.13 1.39 NA NA NA 0.89 3.72 2.47 2.74 0.32 2.15 3.37 NA 1.85 0.00 NA NA NA 1.07 NA 4.85 NA 4.76 2.59 K jcn_only_AA CG7546 chr3L + chr3L_7507455_7508147 chr3L_7507455_7507748 chr3L_7506918_7507454;chr3L_7508148_7508681 0.74 2.40 1.25 0.00 0.00 1.41 0.00 1.09 1.84 0.00 2.53 0.79 1.39 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 6.15 1.07 0.00 0.00 1.89 1.98 2.14 0.66 0.00 5.88 0.00 2.44 0.00 0.00 0.86 0.88 1.55 0.71 1.27 0.00 0.00 0.00 1.65 1.63 0.75 1.73 0.00 0.74 0.00 0.00 0.90 0.00 2.88 1.32 0.00 0.00 1.01 K intron_retention vari,I_chr2L_20792267_20794059 chr2L - chr2L_20790721_20791166 chr2L_20790720_20790721;chr2L_20791166_20791167 chr2L_20790622_20790720;chr2L_20791167_20791664 0.00 0.00 0.00 1.92 1.47 0.00 6.94 3.12 2.41 0.00 0.00 3.45 17.74 0.00 4.12 3.15 1.37 0.00 2.78 3.50 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 1.87 0.00 0.89 2.94 1.32 0.00 0.00 0.00 0.00 0.54 0.00 1.13 0.00 0.00 0.00 0.40 3.45 0.00 1.40 0.00 0.00 0.00 0.00 0.00 1.96 0.00 5.66 0.00 K cassette Pop2,RI_chr3L_11992097_11993849 chr3L - chr3L_11994191_11995685 chr3L_11994191_11994826;chr3L_11995032_11995685 chr3L_11994827_11995031 chr3L_11993850_11994190;chr3L_11995686_11995985 0.85 0.98 0.00 0.90 0.00 0.00 1.01 1.10 0.61 0.00 5.88 0.85 0.00 0.00 1.14 1.43 1.33 0.00 0.00 0.68 3.33 1.69 1.57 1.22 0.00 0.00 2.20 2.56 0.00 0.00 0.00 1.41 0.80 1.06 1.27 1.94 0.88 0.00 1.03 0.55 0.00 0.00 0.00 0.79 0.00 0.69 1.18 0.61 0.87 1.83 1.28 0.00 0.00 1.20 1.37 1.01 0.98 0.00 K intron_retention CG8229,CG33199 chr2R - chr2R_4838297_4838415 chr2R_4838296_4838297;chr2R_4838415_4838416 chr2R_4838211_4838296;chr2R_4838416_4838558 0.00 0.00 0.00 1.85 2.78 0.00 0.00 0.84 0.00 1.49 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.63 0.00 19.54 0.79 0.00 0.00 0.00 0.00 6.02 2.50 2.27 0.00 2.20 0.00 0.00 0.00 0.00 1.98 0.00 0.00 0.00 2.35 1.32 0.00 0.00 0.00 1.18 1.20 0.00 0.61 0.00 0.00 0.00 0.00 0.88 0.58 0.00 0.00 0.57 K jcn_only_AD CG4774,RI_chr3R_21512589_21512972 chr3R - chr3R_21512589_21512703 chr3R_21512589_21512667 chr3R_21512489_21512588;chr3R_21512704_21512736 22.22 13.33 23.53 19.72 8.00 25.00 27.12 9.28 21.13 15.00 NA 22.58 22.73 27.91 24.14 11.30 23.53 17.95 16.98 21.88 8.11 NA 19.35 23.91 18.75 22.95 26.79 22.73 25.64 22.86 12.00 15.15 33.33 19.54 13.04 28.12 22.22 17.78 16.39 22.95 43.75 16.85 23.26 34.48 25.00 7.14 12.50 20.45 24.24 26.47 25.81 19.23 20.59 12.90 22.39 13.46 30.23 25.00 K alternative_acceptor Gel,I_chr3R_63540_64006,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_63540_63897;chr3R_63540_64006 chr3R_63540_64024 chr3R_63440_63539;chr3R_64025_64099 99.73 99.78 99.77 99.66 99.73 100.00 99.03 99.58 99.46 100.00 100.00 99.61 99.10 99.49 100.00 98.96 99.73 100.00 99.55 99.89 100.00 100.00 99.77 99.76 98.96 98.19 99.35 100.00 100.00 100.00 99.71 100.00 100.00 99.69 100.00 98.08 99.78 100.00 100.00 99.41 97.06 99.61 99.40 99.56 100.00 99.11 99.53 100.00 99.40 99.60 99.70 98.91 100.00 100.00 99.45 99.62 100.00 100.00 K intron_retention Ucp4A chrX + chrX_17740826_17740963 chrX_17740825_17740826;chrX_17740963_17740964 chrX_17740767_17740825;chrX_17740964_17741452 16.67 16.67 21.43 26.09 NA NA 40.91 9.52 12.50 33.33 NA 16.67 NA NA NA NA NA 15.00 NA 19.44 NA 54.55 17.78 28.00 29.63 NA 20.00 41.18 20.00 8.70 35.71 9.09 9.52 16.00 21.05 6.25 11.86 16.67 20.00 20.00 28.57 13.16 NA 12.00 11.76 18.18 8.70 23.53 29.03 22.22 16.00 16.00 11.76 14.81 14.29 13.51 19.05 3.57 K intron_retention mre11 chr2L + chr2L_11282407_11282458 chr2L_11282406_11282407;chr2L_11282458_11282459 chr2L_11282173_11282406;chr2L_11282459_11283533 0.00 0.00 4.69 7.32 0.00 0.00 1.01 1.54 3.53 0.00 0.00 0.00 0.00 0.00 4.62 0.00 0.00 0.00 0.00 2.04 1.72 8.00 6.06 0.00 4.65 0.00 4.60 1.33 4.35 1.39 3.92 0.00 3.57 0.00 0.00 1.06 0.00 0.00 0.00 5.31 2.74 1.18 0.00 0.00 1.27 0.00 0.00 0.00 2.74 0.00 0.00 0.00 2.38 0.00 3.08 0.00 0.00 2.04 K intron_retention sgg,I_chrX_2529065_2563945,I_chrX_2536127_2563666,I_chrX_2552903_2553180,I_chrX_2555127_2563666,I_chrX_2561695_2562135,I_chrX_2563342_2563666,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2536127_2563945 chrX_2536126_2536127;chrX_2563945_2563946 chrX_2536027_2536126;chrX_2563946_2564045 0.00 0.00 0.00 2.94 0.00 2.13 3.45 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 5.13 4.35 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 1.35 0.00 6.45 0.00 0.00 0.00 0.00 0.00 0.00 1.39 2.08 0.00 2.50 0.00 0.00 0.00 1.37 0.00 2.44 0.96 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 K intron_retention Tim8 chrX + chrX_11262659_11262736 chrX_11262658_11262659;chrX_11262736_11262737 chrX_11262384_11262658;chrX_11262737_11263334 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.92 0.00 0.00 0.45 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention KrT95D,I_chr3R_19825840_19825904 chr3R - chr3R_19826503_19829137 chr3R_19826502_19826503;chr3R_19829137_19829138 chr3R_19825902_19826502;chr3R_19829138_19829486 45.08 NA 60.00 70.59 NA NA 70.59 88.89 51.85 25.93 46.15 57.14 40.00 NA 53.85 77.78 NA NA NA 45.00 60.00 33.33 45.16 47.06 50.00 NA 46.43 35.48 25.64 17.86 NA 55.56 27.78 50.00 30.77 13.46 35.48 50.00 40.00 34.62 NA 40.00 NA 33.33 12.50 26.32 60.00 18.52 76.47 37.50 37.50 NA NA NA 53.85 NA NA NA K intron_retention CG31716,I_chr2L_10397648_10398034 chr2L + chr2L_10401868_10401925 chr2L_10401867_10401868;chr2L_10401925_10401926 chr2L_10401857_10401867;chr2L_10401926_10402333 0.00 1.23 1.09 0.00 0.00 1.32 3.03 0.00 1.55 0.00 0.00 1.22 0.00 0.00 2.04 0.85 0.00 0.00 0.00 1.05 0.00 0.83 0.00 0.00 1.54 0.00 5.11 0.00 0.00 0.00 2.50 0.00 0.00 2.86 0.00 1.05 0.00 0.00 0.79 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 1.89 0.00 2.02 0.74 0.00 0.00 K alternative_acceptor gammaCop,rod chr3R + chr3R_27398001_27398222 chr3R_27398001_27398219 chr3R_27397876_27398000;chr3R_27398223_27398878 25.86 23.26 27.78 32.86 29.17 27.27 25.45 22.37 28.30 30.77 26.67 24.53 21.88 17.31 29.63 25.00 28.57 27.08 24.00 26.85 33.33 28.00 30.99 19.15 30.30 27.45 23.81 30.36 23.64 20.00 27.84 20.51 29.63 28.36 25.86 25.33 29.79 19.35 34.21 25.23 26.67 25.58 24.44 23.38 31.71 25.71 29.09 24.29 23.81 35.90 20.25 20.00 25.45 16.00 27.69 20.00 18.18 32.69 K jcn_only_AA CG8478,CREF_chr3R_5589662_5589762 chr3R + chr3R_5589658_5589747;chr3R_5589658_5589759 chr3R_5589658_5589762 chr3R_5589562_5589657;chr3R_5589763_5589862 89.36 94.87 90.77 91.57 88.57 86.11 91.84 86.67 84.15 92.86 84.09 88.00 82.35 86.67 89.58 94.12 90.48 91.89 94.59 91.45 85.42 92.68 83.93 90.48 89.29 84.91 92.31 86.96 88.89 92.21 91.30 90.38 82.80 84.42 88.57 88.37 85.11 96.15 91.67 89.36 92.68 90.91 93.02 89.36 79.17 82.00 89.74 94.51 88.89 89.29 84.21 84.85 78.79 93.33 90.70 92.16 NA 80.68 K intron_retention CG14801,I_chrX_1721454_1737724 chrX + chrX_1726093_1737724 chrX_1726092_1726093;chrX_1737724_1737725 chrX_1726029_1726092;chrX_1737725_1737824 23.98 23.53 35.71 38.46 NA NA 30.77 23.81 31.43 NA 30.77 16.00 NA NA 31.25 NA NA NA NA 24.14 NA 26.32 22.58 15.79 6.67 NA NA 26.09 29.41 14.29 NA NA 35.71 20.00 45.45 23.08 0.00 15.15 16.67 23.08 NA 26.32 NA 15.38 NA NA 15.38 NA 26.92 33.33 13.04 17.65 NA NA 28.57 NA 36.36 NA K jcn_only_AA Dgp-1,I_chr2R_14058825_14059758,I_chr2R_14058951_14059942,I_chr2R_14058954_14059942 chr2R - chr2R_14058825_14059942;chr2R_14058954_14059942 chr2R_14058951_14059942 chr2R_14059943_14060042 0.00 0.00 2.50 0.00 4.35 3.33 0.00 0.00 0.00 NA 0.00 0.00 3.85 0.00 2.70 3.39 0.00 0.00 0.00 1.19 0.00 1.52 0.00 4.00 2.38 3.23 5.00 0.00 1.37 0.00 0.00 0.00 1.61 0.00 0.00 6.25 0.00 0.00 0.00 0.00 6.12 0.00 3.33 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.23 0.00 1.39 K intron_retention Cap-H2 chr3R + chr3R_6591616_6591749 chr3R_6591615_6591616;chr3R_6591749_6591750 chr3R_6591236_6591615;chr3R_6591750_6591850 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 87.50 100.00 93.33 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 90.00 100.00 90.91 90.00 100.00 100.00 100.00 NA 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 90.91 100.00 100.00 K intron_retention phtf,I_chr2R_2629598_2630209 chr2R + chr2R_2632045_2632103 chr2R_2632044_2632045;chr2R_2632103_2632104 chr2R_2631158_2632044;chr2R_2632104_2632282 0.00 0.00 0.00 2.78 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 11.11 0.00 0.00 NA 0.00 8.57 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_last_exon CG33097,I_chr3R_2191538_2191675,I_chr3R_2199103_2199426 chr3R - chr3R_2188953_2190725 chr3R_2190448_2190725 chr3R_2188560_2188952 chr3R_2190209_2190447 chr3R_2190726_2190876 17.65 20.22 17.50 12.43 18.03 17.11 20.95 13.99 16.00 20.63 11.43 16.99 17.46 12.12 16.67 20.19 17.54 13.64 16.09 14.80 13.33 20.79 25.56 19.23 25.00 5.75 17.65 25.00 17.65 22.58 22.62 15.89 17.79 16.67 16.90 23.81 18.40 19.44 25.00 22.61 19.81 17.68 18.46 25.89 12.59 17.68 16.07 19.32 13.58 18.32 20.33 18.75 10.71 13.19 13.86 14.41 12.12 13.10 K intron_retention gish,RI_chr3R_12118557_12122383 chr3R + chr3R_12118557_12121390 chr3R_12118556_12118557;chr3R_12121390_12121391 chr3R_12118496_12118556;chr3R_12121391_12121542 40.00 45.00 47.83 32.61 40.00 47.37 45.00 39.47 47.92 NA 33.33 57.50 33.33 33.33 45.45 47.37 65.00 29.41 52.00 33.33 NA 40.00 29.17 50.00 NA 47.06 36.36 53.85 NA 36.36 51.72 NA 63.64 50.00 25.93 37.50 35.71 47.37 38.46 36.84 NA 41.86 44.00 42.86 NA 50.00 30.77 NA 37.21 23.08 30.00 35.71 NA 33.33 53.57 NA 29.41 58.33 K cassette dlg1,I_chrX_11298230_11299306 chrX + chrX_11292856_11294820;chrX_11292856_11299306 chrX_11292856_11293774;chrX_11293850_11294820,chrX_11293850_11299306 chrX_11293775_11293849 chrX_11292753_11292855;chrX_11299307_11299406 100.00 100.00 100.00 97.58 100.00 100.00 99.23 99.37 100.00 98.00 98.53 100.00 98.85 100.00 99.04 100.00 100.00 98.89 99.11 100.00 100.00 99.19 99.19 100.00 100.00 100.00 97.98 98.33 99.15 100.00 100.00 100.00 99.39 99.42 100.00 97.78 99.17 100.00 100.00 99.47 100.00 100.00 98.61 98.95 98.33 98.75 100.00 99.40 100.00 100.00 100.00 98.55 100.00 97.37 100.00 98.48 98.36 100.00 N cassette CG1161,RI_chr3R_1181273_1181459 chr3R + chr3R_1181273_1182146 chr3R_1181273_1181515;chr3R_1181665_1182146 chr3R_1181516_1181664 chr3R_1181173_1181272;chr3R_1182147_1182246 100.00 100.00 100.00 100.00 100.00 100.00 79.49 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.11 100.00 85.42 81.63 85.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 60.32 100.00 100.00 100.00 100.00 100.00 100.00 84.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Klp61F chr3L - chr3L_1242328_1242391 chr3L_1242327_1242328;chr3L_1242391_1242392 chr3L_1242076_1242327;chr3L_1242392_1243602 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr2L_4834257_4835246,CG15626,I_chr2L_4837691_4837844,I_chr2L_4837780_4837844 chr2L - chr2L_4837640_4837844 chr2L_4837639_4837640;chr2L_4837844_4837845 chr2L_4837602_4837639;chr2L_4837845_4837944 19.72 19.44 16.13 22.03 25.93 16.00 25.00 20.00 12.00 22.73 15.62 21.15 15.38 13.79 10.81 5.88 24.00 10.26 25.00 13.25 12.12 18.42 23.21 19.35 40.00 30.56 38.10 35.48 21.74 10.00 21.21 12.50 28.00 31.37 20.83 45.45 11.63 14.29 14.58 16.67 NA 17.19 26.92 18.42 24.00 28.57 17.65 27.78 20.00 25.00 35.48 32.00 16.67 34.78 15.62 16.67 14.29 15.00 K jcn_only_AA Vps13,I_chr2R_3464510_3464571 chr2R + chr2R_3464510_3464571 chr2R_3464510_3464566 chr2R_3464410_3464509;chr2R_3464572_3464671 100.00 100.00 97.30 98.28 100.00 100.00 100.00 99.04 100.00 NA 100.00 100.00 100.00 100.00 100.00 98.67 100.00 100.00 98.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 95.83 NA 100.00 100.00 97.53 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 98.89 100.00 98.21 95.24 100.00 NA 98.59 98.99 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 98.90 K cassette Rcd1 chr2R - chr2R_10037459_10037730 chr2R_10037459_10037540;chr2R_10037601_10037730 chr2R_10037541_10037600 chr2R_10037393_10037458;chr2R_10037731_10037959 8.33 NA NA NA NA NA NA NA 0.00 NA NA 8.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention mor chr3R - chr3R_11794233_11794296 chr3R_11794232_11794233;chr3R_11794296_11794297 chr3R_11793808_11794232;chr3R_11794297_11795124 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.31 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 K alternative_donor CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3018025_3018081;chr2L_3018025_3018163;chr2L_3018025_3018085;chr2L_3018025_3018278 chr2L_3018025_3018274 chr2L_3017982_3018024;chr2L_3018279_3018287 6.67 0.00 NA 0.00 NA NA 8.33 10.00 9.52 NA NA 9.09 NA 0.00 0.00 0.00 0.00 NA NA 16.67 NA 0.00 NA 0.00 NA NA NA NA NA NA 11.11 0.00 NA 6.67 NA NA NA NA NA 8.33 0.00 11.11 0.00 11.11 0.00 10.00 NA 8.33 7.14 NA NA NA NA NA 0.00 NA NA 12.50 K alternative_acceptor B52,E_chr3R_9488770_9491174 chr3R + chr3R_9491971_9492016;chr3R_9491971_9492077 chr3R_9491971_9492140 chr3R_9491806_9491970;chr3R_9492141_9492586 99.55 99.80 100.00 98.53 99.37 98.47 98.51 99.07 99.33 99.09 100.00 99.80 99.26 100.00 99.55 99.43 99.21 99.45 99.45 99.26 98.58 99.66 99.73 99.84 99.23 98.89 99.41 99.57 99.12 100.00 99.60 99.58 98.97 98.78 99.74 99.21 99.22 99.57 99.70 99.61 98.88 99.61 99.28 99.71 99.44 99.58 99.82 99.40 99.60 100.00 99.64 99.34 99.72 99.67 100.00 99.64 99.78 98.87 K intron_retention alien chr2L - chr2L_8995539_8995601 chr2L_8995538_8995539;chr2L_8995601_8995602 chr2L_8995477_8995538;chr2L_8995602_8995746 87.87 90.91 86.96 97.22 83.33 78.95 69.57 97.73 88.64 NA 86.67 87.10 90.48 84.21 92.00 90.32 93.75 77.78 85.71 84.09 71.43 60.00 NA NA NA 89.66 90.91 75.00 81.25 90.00 84.21 94.12 88.89 91.43 NA NA 91.67 NA 84.21 78.95 80.00 91.49 78.95 NA 100.00 84.62 75.00 88.24 96.43 87.50 90.91 NA NA NA 95.45 80.00 90.00 90.00 K alternative_acceptor Myb,RI_chrX_15752571_15753225 chrX - chrX_15751579_15751709 chrX_15751647_15751709 chrX_15751710_15751876;chrX_15749823_15751578 95.22 88.89 100.00 95.65 88.89 90.00 94.12 96.55 100.00 NA 85.71 100.00 100.00 90.00 90.91 94.44 90.00 90.91 100.00 86.96 NA NA 100.00 100.00 NA 90.00 100.00 NA 90.00 NA 100.00 NA 88.89 95.45 85.71 100.00 85.71 85.71 NA 100.00 85.71 95.00 100.00 NA NA NA NA 100.00 95.65 NA 100.00 NA NA NA 100.00 100.00 NA 92.31 K intron_retention CG10277,I_chr3R_2211939_2212057 chr3R + chr3R_2212624_2212691 chr3R_2212623_2212624;chr3R_2212691_2212692 chr3R_2212476_2212623;chr3R_2212692_2213515 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 1.68 1.43 1.67 0.00 0.00 0.00 0.00 0.00 1.09 0.00 1.08 0.00 0.00 0.00 0.00 1.90 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 K alternative_acceptor csul chr2R + chr2R_12152628_12152686;chr2R_12152628_12152671 chr2R_12152628_12152704 chr2R_12152244_12152627;chr2R_12152705_12153131 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG17331,RI_chr2L_16731891_16731942 chr2L - chr2L_16731869_16731942 chr2L_16731891_16731942 chr2L_16731943_16732042;chr2L_16731791_16731868 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.29 0.00 0.00 0.00 0.45 0.48 0.38 0.00 0.61 0.00 0.41 0.00 0.00 0.00 0.45 0.00 0.38 0.00 0.00 K intron_retention lwr,RI_chr2L_542347_542429 chr2L - chr2L_542351_542429 chr2L_542350_542351;chr2L_542429_542430 chr2L_541709_542350;chr2L_542430_542529 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.46 1.05 0.00 0.00 0.00 1.54 8.94 0.00 0.00 0.76 0.62 0.00 0.00 0.00 1.18 0.00 1.20 0.00 0.00 0.85 0.00 0.00 0.53 1.38 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 1.35 0.00 2.92 0.00 K intron_retention Rtnl1,I_chr2L_4994995_4995154,I_chr2L_4994995_5006383,RE_chr2L_4994997_5008180,I_chr2L_4999312_5000248,I_chr2L_4999386_4999670,I_chr2L_4999386_5000201,I_chr2L_5004757_5006383,I_chr2L_5004775_5006231,I_chr2L_5004775_5006381,I_chr2L_5004775_5006392,I_chr2L_5027222_5028118 chr2L - chr2L_4994995_4999224 chr2L_4994994_4994995;chr2L_4999224_4999225 chr2L_4994897_4994994;chr2L_4999225_4999311 10.53 11.11 0.00 9.30 8.00 23.08 16.67 12.24 15.00 4.17 6.90 16.28 28.57 7.41 3.70 8.00 9.09 5.00 14.29 19.44 0.00 11.76 7.41 0.00 NA 6.45 10.00 0.00 NA 10.53 10.53 NA 6.90 11.63 12.00 25.00 NA 0.00 14.29 13.79 12.50 14.81 13.33 0.00 14.29 NA 8.82 16.67 15.91 7.41 11.43 5.56 4.35 NA 12.50 11.76 7.14 5.66 K intron_retention RI_chr3R_5165997_5180143,CG33936,noncoding_15544,I_chr3R_5167726_5180143,RI_chr3R_5183458_5183705 chr3R + chr3R_5167693_5167941 chr3R_5167692_5167693;chr3R_5167941_5167942 chr3R_5167626_5167692;chr3R_5167942_5167998 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.59 100.00 100.00 99.19 99.58 100.00 100.00 100.00 99.40 100.00 100.00 99.39 100.00 100.00 100.00 100.00 99.38 100.00 100.00 99.35 100.00 100.00 99.53 100.00 100.00 100.00 99.07 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 99.32 98.63 100.00 100.00 98.96 100.00 100.00 K alternative_donor Bsg25D,I_chr2L_5277665_5277933 chr2L - chr2L_5277181_5277957 chr2L_5277181_5277933 chr2L_5276936_5277180;chr2L_5277958_5278033 88.89 84.62 100.00 83.33 NA NA 94.12 94.12 84.21 NA NA 85.00 NA 90.91 66.67 90.00 88.89 NA 100.00 88.89 100.00 93.75 94.12 71.43 90.00 85.71 91.67 81.82 75.00 91.67 100.00 NA 90.91 90.91 69.23 90.00 83.33 90.00 91.67 85.00 87.50 88.89 NA 85.71 NA 85.71 84.62 100.00 88.24 88.89 92.86 90.00 88.89 NA 81.82 NA 87.50 NA K intron_retention Cct5 chr2R + chr2R_8062534_8063241 chr2R_8062533_8062534;chr2R_8063241_8063242 chr2R_8062307_8062533;chr2R_8063242_8064223 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.28 0.00 0.32 0.15 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.26 0.00 0.00 0.32 0.00 0.00 0.00 1.33 0.70 0.58 0.00 0.29 0.00 0.00 0.00 0.00 0.27 0.28 0.00 0.17 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.35 0.00 0.00 0.00 0.00 0.00 0.19 0.00 K cassette MRP,I_chr2L_12727117_12729243,F_chr2L_12727117_12736035 chr2L + chr2L_12727117_12737958 chr2L_12727117_12729184;chr2L_12729406_12737958 chr2L_12729185_12729405 chr2L_12727017_12727116;chr2L_12737959_12738176 9.68 12.20 19.35 17.50 10.00 22.22 12.96 15.00 15.69 8.33 18.18 32.56 18.18 17.65 13.79 15.15 14.81 12.00 14.81 40.54 9.52 2.72 11.97 5.38 10.61 14.29 7.14 6.67 3.60 6.49 7.55 5.71 2.25 13.64 7.84 9.68 7.95 7.41 10.78 10.28 2.94 15.22 8.70 6.56 6.67 2.56 7.14 6.45 20.51 2.15 7.91 13.95 8.82 2.00 25.93 4.48 5.00 6.67 K intron_retention CG1622,I_chrX_13192409_13192738,EI_chrX_13192857_13192928 chrX + chrX_13192846_13192928 chrX_13192845_13192846;chrX_13192928_13192929 chrX_13192807_13192845;chrX_13192929_13192997 2.20 0.00 3.42 3.57 2.60 3.51 2.70 3.50 1.59 0.00 1.37 1.81 6.15 6.06 6.32 0.97 2.99 3.30 4.67 2.49 0.00 5.56 1.71 6.38 4.11 1.06 5.62 7.89 2.05 1.06 2.87 0.93 1.63 3.73 4.17 0.89 1.71 2.60 2.31 4.03 1.75 0.93 0.00 2.20 0.64 0.36 0.00 1.33 2.53 4.17 2.97 0.00 0.98 2.11 0.00 1.69 4.31 1.54 K alternative_acceptor CG10462 chr2L - chr2L_19734410_19734469;chr2L_19734413_19734469 chr2L_19734281_19734469 chr2L_19734470_19734941;chr2L_19733639_19734280 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG12325 chr2R + chr2R_6714046_6714402 chr2R_6714045_6714046;chr2R_6714402_6714403 chr2R_6713884_6714045;chr2R_6714403_6714619 0.00 0.00 0.00 19.44 3.85 0.00 13.33 10.00 0.00 0.00 0.00 6.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 7.69 2.13 7.32 7.69 0.00 0.00 6.25 0.00 0.00 4.35 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 2.22 0.00 0.00 0.00 3.57 0.00 0.00 6.00 4.08 5.66 0.00 0.00 0.00 0.00 3.23 3.51 0.00 K alternative_acceptor TepIV,EI_chr2L_19548696_19549582 chr2L + chr2L_19553916_19553978;chr2L_19553916_19553975 chr2L_19553916_19553969 chr2L_19553362_19553915;chr2L_19553979_19556092 2.47 2.44 4.62 3.60 0.00 2.17 3.09 2.24 3.82 3.06 2.74 2.42 3.16 1.47 2.74 1.55 4.69 2.78 2.53 2.84 3.08 2.67 2.42 4.55 2.13 3.51 2.35 3.87 2.35 2.15 2.41 2.47 1.92 2.80 1.85 1.37 3.60 0.00 2.35 2.56 3.33 2.37 1.64 2.63 2.65 2.74 2.25 2.41 2.84 1.94 2.44 3.39 1.79 2.04 1.27 4.17 1.48 2.70 K intron_retention I_chr2L_5050018_5050955,I_chr2L_5050249_5050657,Rpn11 chr2L - chr2L_5059560_5059629 chr2L_5059559_5059560;chr2L_5059629_5059630 chr2L_5058786_5059559;chr2L_5059630_5059782 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 4.27 7.03 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.55 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG1161,RI_chr3R_1181273_1181459 chr3R + chr3R_1181273_1181555;chr3R_1181273_1181515 chr3R_1181273_1181459 chr3R_1181173_1181272;chr3R_1181556_1181559 0.83 0.92 0.91 0.00 0.40 0.00 5.49 0.65 0.80 3.49 0.00 0.26 1.67 0.64 0.39 0.00 0.46 0.93 2.31 1.09 1.29 1.41 0.94 1.45 0.83 4.29 2.63 0.00 2.08 0.00 2.82 1.11 1.25 0.39 1.95 1.79 0.71 0.39 0.78 1.60 6.02 0.49 0.89 2.07 1.65 0.42 1.28 0.00 0.29 0.73 1.85 3.07 0.00 0.72 0.38 0.74 0.32 0.00 K intron_retention Ac3,I_chr2L_21635211_21637957,I_chr2L_21643253_21646594 chr2L + chr2L_21640006_21640727 chr2L_21640005_21640006;chr2L_21640727_21640728 chr2L_21639642_21640005;chr2L_21640728_21641013 11.76 NA NA NA NA NA 33.33 11.76 18.18 NA NA 29.41 NA NA NA 13.33 NA NA 12.50 13.64 NA NA 14.29 11.76 NA NA 6.25 NA NA NA 9.52 NA NA 23.81 NA NA 9.09 NA 0.00 13.04 NA 11.11 NA NA NA NA NA NA 10.53 NA 5.88 NA NA NA 7.69 NA NA NA K intron_retention CG9636,RI_chr3R_4068335_4068401 chr3R - chr3R_4069245_4069361 chr3R_4069244_4069245;chr3R_4069361_4069362 chr3R_4068944_4069244;chr3R_4069362_4069494 94.87 91.67 100.00 97.50 100.00 93.75 93.75 95.24 93.75 92.86 92.86 97.14 94.74 95.45 95.00 87.50 100.00 100.00 88.24 94.44 80.00 94.44 92.31 94.44 93.33 95.45 100.00 94.74 96.30 94.44 92.86 100.00 100.00 100.00 93.75 100.00 94.74 100.00 95.45 86.21 94.74 97.06 100.00 96.15 100.00 90.91 91.67 91.67 97.37 91.67 90.00 95.45 100.00 NA 96.30 92.31 100.00 95.00 K jcn_only_AA I_chrX_15223901_15223968,HDAC6,I_chrX_15232958_15233665 chrX + chrX_15229302_15229382 chrX_15229302_15229355 chrX_15229023_15229301;chrX_15229383_15229421 0.00 0.00 NA NA NA NA 0.00 2.86 1.82 NA NA 0.00 NA 0.00 0.00 3.12 NA NA NA 0.00 NA 0.00 4.17 0.00 NA NA 0.00 NA NA 0.00 8.70 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 2.94 0.00 0.00 0.00 NA NA NA 0.00 NA NA 0.00 K intron_retention Df31 chr2L - chr2L_21627758_21627841 chr2L_21627757_21627758;chr2L_21627841_21627842 chr2L_21627572_21627757;chr2L_21627842_21628209 0.06 0.09 0.00 0.12 0.00 0.00 0.18 0.27 0.08 0.00 0.00 0.00 0.12 0.00 0.16 0.00 0.17 0.00 0.13 0.04 0.00 0.00 0.19 0.13 0.22 0.00 0.20 0.47 0.00 0.05 0.00 0.00 0.04 0.17 0.11 0.11 0.07 0.08 0.12 0.14 0.07 0.15 0.00 0.00 0.06 0.03 0.07 0.00 0.11 0.17 0.05 0.00 0.04 0.07 0.00 0.00 0.09 0.05 K intron_retention Rip11,RI_chrX_18530353_18530870,RI_chrX_18544139_18544185 chrX - chrX_18534444_18541222 chrX_18534443_18534444;chrX_18541222_18541223 chrX_18534299_18534443;chrX_18541223_18541623 0.69 0.74 0.76 0.36 0.47 1.08 0.53 0.75 0.56 0.23 0.76 0.73 0.44 0.41 0.73 0.82 0.94 0.86 0.33 0.83 0.78 0.69 0.76 0.55 1.28 0.29 0.89 1.28 0.79 0.58 1.64 0.37 0.20 0.81 0.50 0.37 0.47 0.72 0.46 0.72 0.00 0.64 0.66 0.36 0.89 0.37 1.14 0.52 0.64 0.51 0.61 0.67 0.73 0.94 0.76 0.82 0.88 0.47 K intron_retention Galpha49B,I_chr2R_8501587_8501648,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500357_8501759 chr2R_8500356_8500357;chr2R_8501759_8501760 chr2R_8500333_8500356;chr2R_8501760_8501850 95.84 100.00 100.00 91.30 100.00 90.91 96.43 96.67 97.56 NA 94.74 97.37 94.44 95.00 94.12 96.77 95.24 93.33 94.44 100.00 100.00 100.00 100.00 93.33 100.00 92.86 100.00 NA 100.00 100.00 94.44 NA 88.89 100.00 100.00 91.67 100.00 100.00 90.00 89.47 90.91 88.00 100.00 93.33 NA 91.67 NA 94.44 92.31 100.00 100.00 93.33 NA NA 94.12 NA 100.00 NA K intron_retention I_chr2R_2539027_2539493,Opbp chr2R + chr2R_2540827_2540877 chr2R_2540826_2540827;chr2R_2540877_2540878 chr2R_2540768_2540826;chr2R_2540878_2541565 0.00 NA 0.00 12.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 3.12 NA NA NA 0.00 NA NA NA NA 11.76 NA 0.00 NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA NA NA 0.00 NA NA NA K alternative_donor CG10999 chr3R + chr3R_1639660_1640660 chr3R_1640572_1640660 chr3R_1640661_1641005;chr3R_1639417_1639659 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 0.00 NA NA NA NA NA 8.33 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA K jcn_only_AA Nipsnap,RI_chrX_15965934_15967435 chrX - chrX_15967134_15967435 chrX_15967175_15967435 chrX_15967436_15967464;chrX_15967060_15967133 73.91 NA NA 75.76 NA NA 73.91 85.19 85.19 NA NA 88.24 100.00 70.37 NA 81.03 70.00 NA 85.71 83.33 NA 87.50 NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA 73.91 NA NA 50.00 NA 64.29 NA 71.43 NA NA NA NA 73.33 NA NA NA NA NA 72.73 NA NA 71.43 K jcn_only_AA Top2,I_chr2L_19452310_19453250,I_chr2L_19452794_19453250 chr2L - chr2L_19452316_19453250 chr2L_19452794_19453250 chr2L_19453251_19453350;chr2L_19452216_19452315 0.00 0.79 0.55 0.47 0.00 0.00 0.00 0.41 0.00 1.85 0.00 0.00 0.00 1.97 0.00 0.82 0.00 1.10 0.61 0.00 2.13 2.50 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 1.18 0.64 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention wnd chr3L - chr3L_19622854_19625466 chr3L_19622853_19622854;chr3L_19625466_19625467 chr3L_19622365_19622853;chr3L_19625467_19626104 27.78 NA 35.71 13.79 36.36 NA 37.50 24.00 39.39 25.00 NA 28.00 53.33 15.38 40.00 25.00 33.33 72.73 33.33 52.00 30.77 12.00 33.33 12.50 14.29 20.00 20.00 58.33 10.71 5.56 21.43 NA 30.00 28.57 NA 0.00 6.25 NA 14.29 21.43 NA 26.67 33.33 31.58 NA NA NA 17.65 38.46 NA 27.78 NA NA NA 31.58 NA NA 11.11 K intron_retention CG10638 chr3L - chr3L_12493253_12493311 chr3L_12493252_12493253;chr3L_12493311_12493312 chr3L_12493196_12493252;chr3L_12493312_12493362 0.00 NA NA NA NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 0.00 NA NA NA 6.67 9.09 NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA NA NA NA NA 0.00 NA NA K intron_retention Pgi,I_chr2R_4801076_4801329 chr2R - chr2R_4801134_4801214 chr2R_4801133_4801134;chr2R_4801214_4801215 chr2R_4800938_4801133;chr2R_4801215_4801631 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.14 99.42 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.99 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Tfb4,I_chr2L_1156009_1158078,I_chr2L_1153732_1157370,I_chr2L_1163632_1163759 chr2L - chr2L_1150560_1150616 chr2L_1150559_1150560;chr2L_1150616_1150617 chr2L_1150379_1150559;chr2L_1150617_1150709 1.18 4.35 0.00 0.00 0.00 3.70 0.00 2.47 3.15 0.00 1.92 4.44 0.00 0.00 3.28 3.08 0.00 0.00 2.13 2.36 4.17 0.00 5.56 0.00 NA 0.00 6.67 0.00 3.12 0.00 1.67 0.00 2.22 1.41 0.00 0.00 0.00 0.00 0.00 1.18 16.67 1.94 7.50 3.85 1.25 4.08 0.00 1.92 2.70 4.17 4.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Pfrx,I_chrX_19390217_19400515,RI_chrX_19390217_19403850,RI_chrX_19392914_19400518,RI_chrX_19399882_19400518,I_chrX_19400112_19400515,RI_chrX_19400112_19400518,I_chrX_19400271_19400518 chrX + chrX_19400271_19400515 chrX_19400275_19400515 chrX_19400516_19400615;chrX_19400171_19400270 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor I_chr2L_11009331_11009442,dUTPase,I_chr2L_11011380_11011453 chr2L + chr2L_11011419_11011482;chr2L_11011419_11011471 chr2L_11011419_11011479 chr2L_11011335_11011418;chr2L_11011483_11011553 18.34 17.90 18.64 14.29 10.98 18.81 23.47 12.28 12.14 23.08 34.41 14.29 17.81 23.75 12.10 27.73 17.91 18.10 34.38 10.59 10.31 23.48 23.50 33.33 NA NA 14.36 23.33 33.33 18.37 23.71 34.94 34.48 17.97 23.47 NA 17.67 17.75 17.96 12.42 NA 14.43 18.67 NA 18.45 18.12 17.58 35.09 18.32 12.06 17.73 22.73 24.03 12.35 9.40 23.53 20.00 45.71 K intron_retention Tango1,I_chr2L_6652445_6652752,I_chr2L_6652699_6652752 chr2L + chr2L_6652445_6652496 chr2L_6652444_6652445;chr2L_6652496_6652497 chr2L_6652345_6652444;chr2L_6652497_6652569 0.00 0.00 1.79 2.22 0.00 0.00 1.16 3.12 0.00 0.00 0.00 0.00 5.45 1.92 0.00 0.00 0.00 1.92 0.00 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.56 5.71 2.08 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 2.13 2.50 0.00 0.00 0.00 0.00 K jcn_only_AA CG10948 chr3L - chr3L_12838769_12838833 chr3L_12838786_12838833 chr3L_12838834_12838953;chr3L_12838157_12838768 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Nmnat chr3R + chr3R_20772018_20772675;chr3R_20772018_20772605 chr3R_20772018_20772197 chr3R_20771916_20772017;chr3R_20772676_20772744 38.64 50.00 44.44 37.50 53.85 53.85 40.62 30.77 34.15 43.75 40.00 48.28 40.00 46.67 40.00 47.62 57.14 37.50 50.00 33.33 53.33 38.64 32.35 41.38 38.89 23.53 34.38 50.00 30.00 38.46 42.31 42.31 42.42 34.48 33.33 24.00 22.50 30.00 25.81 41.18 41.38 50.00 35.71 35.48 32.14 30.43 38.46 34.29 40.00 33.33 37.50 36.84 34.62 36.00 42.86 30.00 40.54 44.74 K jcn_only_AD I_chr2L_12099367_12099435,Aats-thr chr2L + chr2L_12103835_12104491 chr2L_12104057_12104491 chr2L_12104492_12104552;chr2L_12103774_12103834 13.45 10.48 17.79 15.03 5.81 7.73 15.70 7.94 9.94 11.21 23.45 10.83 10.19 8.37 11.55 17.31 16.53 14.18 13.12 12.83 19.43 5.23 14.29 20.92 21.74 17.79 22.46 11.07 18.71 10.71 21.91 8.16 10.60 9.28 13.82 26.57 10.18 14.97 14.35 12.84 19.93 13.86 13.60 13.45 10.36 11.54 11.56 8.00 13.13 13.75 13.83 15.82 12.93 13.85 13.93 15.83 12.94 9.73 K intron_retention AGO2 chr3L + chr3L_15553217_15553307 chr3L_15553216_15553217;chr3L_15553307_15553308 chr3L_15552839_15553216;chr3L_15553308_15553678 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.37 0.00 0.60 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.60 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.38 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.32 0.00 0.00 0.00 0.00 K jcn_only_AA Sod,RI_chr3L_11105949_11106366,I_chr3L_11105949_11106370 chr3L - chr3L_11105944_11106673 chr3L_11105949_11106673 chr3L_11106674_11106838;chr3L_11105849_11105943 100.00 100.00 100.00 99.64 100.00 100.00 100.00 100.00 100.00 99.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.26 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.76 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.73 100.00 100.00 100.00 100.00 99.76 99.82 100.00 K multi_cassette CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21275807_21281131 chr2L_21275807_21277196;chr2L_21278430_21279883;chr2L_21280448_21281131 chr2L_21277197_21278429;chr2L_21279884_21280447 chr2L_21275724_21275806;chr2L_21281132_21281337 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention aru,I_chr2L_862259_862314,I_chr2L_864795_867505 chr2L - chr2L_862259_862318 chr2L_862258_862259;chr2L_862318_862319 chr2L_862159_862258;chr2L_862319_862414 1.49 1.23 1.85 9.09 0.00 0.00 1.32 2.33 1.57 0.00 0.97 3.02 0.74 1.77 1.89 2.29 0.94 1.24 0.00 2.55 0.00 2.46 3.63 1.07 4.76 5.77 3.36 5.56 7.69 1.00 0.79 2.78 1.41 1.72 0.64 1.36 3.12 1.52 2.06 1.31 5.34 1.45 1.87 1.80 1.49 1.21 1.18 1.85 1.72 0.89 2.04 0.93 1.04 1.39 0.57 0.00 1.49 1.19 K alternative_donor CG3719,E_chrX_1273406_1273479,I_chrX_1273406_1273486,RI_chrX_1273406_1273763 chrX - chrX_1273406_1274170;chrX_1273406_1273486 chrX_1273406_1273763 chrX_1273306_1273405;chrX_1274171_1274773 0.00 1.96 0.00 3.57 0.00 3.70 2.33 0.00 1.33 0.00 4.55 1.61 0.00 0.00 2.50 0.00 0.00 4.76 3.03 0.00 2.94 3.03 2.44 0.00 0.00 0.00 2.00 4.35 0.00 0.00 0.00 0.00 2.50 1.89 0.00 2.94 2.74 2.44 1.64 0.00 2.70 0.00 0.00 0.00 0.00 1.92 0.00 0.00 1.59 0.00 0.00 3.70 0.00 0.00 0.00 0.00 1.64 0.00 K intron_retention CD98hc,I_chr3R_3802791_3802855 chr3R - chr3R_3800588_3800858 chr3R_3800587_3800588;chr3R_3800858_3800859 chr3R_3800140_3800587;chr3R_3800859_3802135 0.27 1.30 0.41 0.64 0.00 0.00 0.65 0.00 0.56 0.00 0.00 0.48 1.79 0.51 0.00 1.08 1.13 0.00 0.00 0.38 0.00 0.00 0.54 0.00 0.00 0.00 0.68 1.25 0.60 0.41 0.42 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.28 0.00 0.54 0.66 0.80 0.51 0.00 0.27 0.00 0.49 0.32 0.75 0.00 0.29 0.00 K intron_retention dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21309092_21309579 chr2L_21309091_21309092;chr2L_21309579_21309580 chr2L_21308992_21309091;chr2L_21309580_21309679 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 91.67 100.00 100.00 100.00 100.00 NA 92.31 100.00 NA 100.00 90.91 90.00 NA 100.00 94.12 100.00 100.00 100.00 92.31 NA 94.12 96.43 90.91 92.86 100.00 100.00 100.00 95.24 100.00 100.00 NA 100.00 NA 100.00 NA 96.43 95.83 NA 100.00 NA NA NA 93.75 NA NA 100.00 K jcn_only_AA stck,I_chr3R_4184313_4184380,I_chr3R_4184660_4184730 chr3R + chr3R_4182818_4184192 chr3R_4182818_4183058 chr3R_4182756_4182817 3.33 NA NA 0.00 NA NA 3.57 0.00 7.50 NA NA 9.09 NA NA NA 3.85 NA NA NA 8.00 NA NA 9.52 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 3.12 NA NA NA NA NA NA 0.00 3.33 NA 0.00 NA NA 4.00 NA 0.00 NA K alternative_donor exd chrX + chrX_15887147_15887504;chrX_15886884_15887504;chrX_15886821_15887504;chrX_15886827_15887504;chrX_15886958_15887504;chrX_15886802_15887504;chrX_15887006_15887504 chrX_15886888_15887504 chrX_15887505_15887806;chrX_15886739_15886801 75.00 NA NA 100.00 NA NA 100.00 75.00 100.00 NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA K alternative_donor CG14478 chr2R + chr2R_13345529_13349498;chr2R_13345952_13349498 chr2R_13345960_13349498 chr2R_13349499_13349990;chr2R_13345525_13345528 57.14 NA 50.00 NA 66.67 NA NA 57.14 60.00 NA 50.00 75.00 25.00 NA NA NA NA NA NA 66.67 NA NA 50.00 75.00 33.33 50.00 66.67 NA NA NA 50.00 NA NA 75.00 66.67 NA 75.00 NA NA 60.00 NA 25.00 0.00 66.67 NA 66.67 NA NA 42.86 NA 33.33 NA NA NA NA NA 50.00 NA K multi_cassette sima,I_chr3R_25908044_25935016,F_chr3R_25908044_25945850,noncoding_20087 chr3R + chr3R_25908044_25945850 chr3R_25908044_25935016;chr3R_25935505_25935571;chr3R_25936341_25937403;chr3R_25938075_25945850 chr3R_25935017_25935504;chr3R_25935572_25936340;chr3R_25937404_25938074 chr3R_25907944_25908043;chr3R_25945851_25945950 100.00 85.71 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 90.91 100.00 100.00 100.00 100.00 88.89 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 K jcn_only_AD Fis1,I_chr2R_1491917_1491981,I_chr2R_1491917_1492087,I_chr2R_1492154_1492214 chr2R - chr2R_1492022_1492093 chr2R_1492022_1492087 chr2R_1491982_1492021;chr2R_1492094_1492153 100.00 100.00 100.00 99.39 100.00 98.68 97.54 99.05 99.03 100.00 98.46 100.00 98.56 100.00 100.00 99.56 100.00 100.00 99.31 100.00 100.00 100.00 100.00 99.12 100.00 100.00 97.94 100.00 100.00 100.00 100.00 98.68 100.00 99.55 97.53 100.00 100.00 98.82 100.00 100.00 100.00 99.17 100.00 98.77 95.00 99.20 99.16 100.00 100.00 100.00 99.05 100.00 98.84 100.00 100.00 100.00 99.43 98.77 K intron_retention Shawn_Tyler,Shawn chrX + chrX_19508985_19509056 chrX_19508984_19508985;chrX_19509056_19509057 chrX_19508475_19508984;chrX_19509057_19509138 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA NA 0.00 NA 0.00 1.79 0.00 0.00 NA 2.56 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA lgs,RI_chr4_463390_463489 chr4 - chr4_463016_463489 chr4_463390_463489 chr4_463490_463589 12.82 4.35 NA 5.45 NA NA 10.00 17.65 21.57 NA NA 4.26 74.07 13.64 13.79 6.38 NA NA 6.90 12.82 9.52 NA NA 20.00 NA 2.78 26.47 NA NA 28.00 19.35 NA 3.23 9.76 NA 34.62 NA NA NA 31.25 NA 0.00 NA 10.71 NA 47.62 NA 4.17 11.90 NA 21.74 NA NA NA 12.90 NA NA NA K alternative_donor AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9003728_9004854;chrX_9004021_9004854;chrX_9003918_9004854 chrX_9003790_9004854 chrX_9004855_9004862;chrX_9003721_9003727 29.63 18.18 21.43 29.17 NA 44.44 29.63 16.67 19.35 NA 14.29 26.32 23.08 27.27 33.33 30.77 44.44 42.86 36.36 32.14 50.00 28.57 19.05 36.36 25.00 40.91 22.22 NA 33.33 50.00 25.93 25.00 28.57 30.77 57.14 36.36 11.11 50.00 33.33 26.67 30.00 33.33 23.08 11.11 NA 33.33 50.00 13.33 31.03 42.86 33.33 27.27 33.33 NA 25.93 28.57 NA 20.00 K intron_retention CG13384 chr2L + chr2L_8384896_8384996 chr2L_8384895_8384896;chr2L_8384996_8384997 chr2L_8384754_8384895;chr2L_8384997_8385097 4.55 4.15 2.92 2.69 6.19 5.08 3.71 4.55 4.04 2.48 6.09 5.54 6.61 5.06 4.15 7.52 3.52 4.78 4.72 5.99 4.21 2.07 4.01 3.92 4.43 2.34 7.72 6.96 6.56 4.04 3.14 6.31 6.59 5.29 5.20 3.47 3.44 2.91 4.12 4.70 3.77 5.02 4.27 3.46 8.16 4.23 5.76 7.21 4.55 3.70 5.08 3.51 5.62 5.79 3.91 5.42 5.00 7.41 K intron_retention CG12065,CE_chrX_8469528_8477573 chrX + chrX_8480279_8481290 chrX_8480278_8480279;chrX_8481290_8481291 chrX_8480019_8480278;chrX_8481291_8481558 1.71 2.05 1.53 2.05 1.31 1.32 0.92 2.06 1.22 2.20 0.00 3.16 1.71 1.24 0.76 0.94 2.83 1.50 1.78 1.95 0.23 1.92 2.52 1.64 2.78 0.47 3.28 3.96 2.03 2.11 0.89 0.82 1.90 1.54 2.31 2.62 1.69 1.67 2.03 2.33 1.66 1.21 1.33 2.05 0.53 1.35 2.51 1.53 1.12 2.51 3.18 3.06 1.13 2.00 1.83 2.38 1.10 1.15 K intron_retention klett chrX - chrX_21497918_21499387 chrX_21497917_21497918;chrX_21499387_21499388 chrX_21497340_21497917;chrX_21499388_21499736 0.00 0.00 2.00 0.00 0.00 1.82 0.00 2.22 1.43 0.00 3.33 1.75 0.00 5.45 0.00 2.82 0.00 0.00 0.00 0.86 0.00 1.82 0.00 0.00 0.00 3.57 3.28 8.33 5.26 1.75 1.54 0.00 0.00 1.98 3.03 2.70 0.00 0.00 0.00 0.00 0.00 2.26 0.00 0.00 0.00 0.00 0.00 0.00 2.99 3.39 0.00 0.00 0.00 2.13 0.00 0.00 2.13 0.00 K jcn_only_AA CG31601,RI_chr2L_22041689_22041995 chr2L - chr2L_22041665_22042106 chr2L_22041689_22042106 chr2L_22042107_22042347;chr2L_22041589_22041664 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.68 100.00 100.00 99.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.55 K alternative_donor CG6178 chr3R + chr3R_19978381_19978811;chr3R_19978326_19978811 chr3R_19978271_19978811 chr3R_19978812_19979489;chr3R_19978101_19978270 5.88 11.11 5.56 4.35 7.14 6.25 18.18 10.71 11.63 0.00 6.67 10.00 0.00 5.00 4.76 4.55 5.56 0.00 20.00 2.50 0.00 0.00 11.11 0.00 9.09 12.50 0.00 0.00 5.88 0.00 9.09 6.67 10.53 8.33 9.09 0.00 0.00 9.09 5.00 15.79 0.00 5.88 13.33 9.09 25.00 5.26 5.26 12.50 3.03 8.33 0.00 0.00 0.00 10.00 10.00 7.69 9.09 3.70 K jcn_only_AD I_chr2R_7171366_7171418,fbl6,dare chr2R - chr2R_7176066_7176897;chr2R_7176066_7177174 chr2R_7176066_7176572 chr2R_7175150_7176065;chr2R_7177175_7177253 14.18 NA NA 15.79 NA NA 13.79 6.67 28.33 NA NA 37.84 6.67 NA 20.83 24.14 NA NA 13.79 14.58 NA NA 4.55 9.09 NA 17.39 10.71 NA NA 11.54 12.50 NA 10.00 19.51 4.55 NA 21.43 NA 15.00 18.52 NA 7.69 NA NA NA NA NA NA 23.40 NA NA 25.00 NA NA 9.76 NA NA NA K jcn_only_AD CG5537,I_chr3L_5804425_5804485 chr3L + chr3L_5804421_5804485 chr3L_5804425_5804485 chr3L_5804486_5804585;chr3L_5804325_5804420 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 1.15 1.94 0.00 1.79 0.00 0.00 0.00 0.72 0.92 1.25 0.83 1.71 0.89 0.86 0.00 0.00 0.00 0.52 0.59 0.72 1.10 0.00 0.00 0.00 0.00 1.02 0.00 0.58 0.86 0.00 0.68 0.58 2.27 0.00 0.63 0.75 0.00 0.00 0.71 K jcn_only_AA Klp31E chr2L + chr2L_10416637_10416693 chr2L_10416637_10416690 chr2L_10416559_10416636;chr2L_10416694_10416882 85.35 NA NA 88.46 NA NA 90.48 75.86 81.82 NA NA 72.00 NA NA NA 84.85 NA NA NA 82.98 NA 86.36 NA NA NA NA NA NA NA NA 88.00 NA NA 73.33 NA NA NA NA NA 100.00 NA 88.46 NA 85.00 NA NA NA NA 91.30 NA 85.71 NA NA NA NA NA 75.00 NA K jcn_only_AD RpS20,snoRNA:Psi28S-2562 chr3R + chr3R_16648582_16648853 chr3R_16648614_16648853 chr3R_16648854_16649080;chr3R_16648524_16648581 99.87 99.89 99.85 99.82 99.92 99.86 99.88 99.93 99.93 99.66 99.93 99.86 99.80 99.91 99.94 99.91 99.97 99.91 99.87 99.86 99.82 99.82 99.89 99.80 99.92 99.90 99.79 99.73 98.94 99.78 99.89 99.72 99.61 99.92 99.87 99.74 99.77 99.87 99.89 99.83 99.80 99.92 99.84 99.86 99.81 99.92 99.87 99.81 99.89 99.93 99.83 99.91 99.87 99.91 99.84 99.88 99.88 99.82 K intron_retention Adf1,CG15908_CG9410 chr2R + chr2R_2549942_2550129 chr2R_2549941_2549942;chr2R_2550129_2550130 chr2R_2549797_2549941;chr2R_2550130_2550262 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 97.37 95.83 100.00 100.00 94.12 100.00 100.00 100.00 93.75 100.00 97.67 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 96.88 100.00 100.00 96.43 100.00 100.00 100.00 100.00 95.65 95.45 100.00 100.00 100.00 100.00 100.00 K intron_retention CG5798 chr3R + chr3R_16963186_16963241 chr3R_16963185_16963186;chr3R_16963241_16963242 chr3R_16962731_16963185;chr3R_16963242_16963944 0.00 0.00 NA 12.50 NA 0.00 3.23 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 3.64 NA 0.00 NA 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention KCNQ,I_chr2R_6034329_6034563,I_chr2R_6039928_6040408 chr2R - chr2R_6034329_6034395 chr2R_6034328_6034329;chr2R_6034395_6034396 chr2R_6034229_6034328;chr2R_6034396_6034499 3.12 NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention lin19 chr2R + chr2R_3804614_3805236 chr2R_3804613_3804614;chr2R_3805236_3805237 chr2R_3804586_3804613;chr2R_3805237_3806344 5.26 0.00 11.11 2.94 NA 0.00 0.00 9.09 3.23 NA NA 4.44 17.65 0.00 0.00 6.82 0.00 31.58 0.00 6.67 14.29 5.41 0.00 NA NA 15.38 11.11 20.00 10.53 14.29 3.33 NA 7.69 0.00 0.00 4.35 0.00 NA NA 3.33 NA 6.67 6.67 10.53 NA 6.67 7.69 7.41 4.17 NA 0.00 0.00 NA NA 5.26 NA NA NA K intron_retention cp309,I_chr3L_15074145_15074432 chr3L - chr3L_15067593_15067783 chr3L_15067592_15067593;chr3L_15067783_15067784 chr3L_15067564_15067592;chr3L_15067784_15068947 37.50 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA 37.50 NA NA NA NA NA NA 46.15 NA NA NA NA NA NA NA NA NA K jcn_only_AA Flo-2 chrX + chrX_14819718_14820798 chrX_14819718_14820768 chrX_14819679_14819717;chrX_14820799_14820907 5.00 NA NA 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG7337,I_chr2L_1910010_1910066,RI_chr2L_1911951_1913208,RI_chr2L_1912284_1913208,I_chr2L_1938620_1938887,I_chr2L_1942183_1942233 chr2L + chr2L_1912235_1913208;chr2L_1911870_1913208;chr2L_1911951_1913208 chr2L_1912284_1913208 chr2L_1913209_1913308;chr2L_1911851_1911869 28.57 NA NA NA NA NA 58.06 33.33 30.56 NA NA NA NA 20.00 28.57 33.33 NA NA NA 26.67 NA NA NA NA NA NA NA NA NA NA 20.83 NA NA 34.62 NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA 26.67 NA NA NA NA NA NA NA NA NA K intron_retention Apc chr3R - chr3R_24662209_24662268 chr3R_24662208_24662209;chr3R_24662268_24662269 chr3R_24658037_24662208;chr3R_24662269_24662407 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 1.28 0.00 0.00 0.00 3.75 13.16 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor mfas,I_chr3R_7811954_7812017,RI_chr3R_7818607_7818970 chr3R - chr3R_7815048_7817793;chr3R_7815246_7817793 chr3R_7815051_7817793 chr3R_7817794_7817801;chr3R_7814932_7815047 35.18 40.31 33.88 31.21 23.39 NA 35.00 18.75 32.86 NA 36.76 31.17 NA 37.90 39.23 27.52 35.34 37.87 NA 41.10 35.38 45.16 33.20 38.46 43.57 NA 38.51 NA 24.24 32.92 36.44 40.18 35.02 33.33 27.05 34.01 34.12 35.96 39.50 29.69 36.67 39.43 33.88 23.47 29.12 30.68 36.44 27.05 36.88 NA 34.80 36.96 35.90 NA NA 37.64 37.00 32.73 K alternative_acceptor CG17471,RI_chr4_1213397_1214333,RI_chr4_1213397_1216053,RI_chr4_1214248_1214333,I_chr4_1214293_1214333,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1214281_1214333;chr4_1214293_1214333 chr4_1214248_1214333 chr4_1214334_1214402;chr4_1214193_1214247 0.00 3.70 0.00 4.55 0.00 0.00 1.96 0.00 2.44 0.00 0.00 4.76 3.45 3.57 0.00 2.33 0.00 3.70 2.94 1.85 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 8.33 0.00 5.26 0.00 0.00 2.94 1.96 0.00 0.00 0.00 2.44 2.94 3.12 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 2.27 K jcn_only_AD pho,I_chr4_1193830_1201673,RI_chr4_1201895_1202215 chr4 - chr4_1201908_1202215 chr4_1201908_1201993 chr4_1201674_1201907;chr4_1202216_1202221 100.00 NA NA 100.00 NA NA 97.87 100.00 98.48 NA NA 96.30 NA 100.00 NA 100.00 NA NA NA 93.10 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 97.62 NA NA 100.00 NA NA NA NA NA NA K jcn_only_AD TfIIB chr2L + chr2L_10431366_10431476 chr2L_10431420_10431476 chr2L_10431477_10431888;chr2L_10431297_10431365 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 99.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 98.96 K jcn_only_AD His4r chr3R + chr3R_10451538_10451747;chr3R_10451564_10451747 chr3R_10451640_10451747 chr3R_10451748_10451951;chr3R_10451469_10451537 7.09 6.36 5.20 4.39 6.80 4.06 8.30 5.99 6.50 12.06 5.73 5.25 5.94 9.45 4.22 9.98 7.09 4.93 3.88 5.29 4.08 14.61 17.35 9.62 15.38 4.36 22.58 9.33 10.53 14.16 5.98 6.03 3.87 4.23 27.38 12.82 9.34 3.12 7.07 9.47 10.71 4.11 5.80 16.50 5.21 14.81 11.24 10.22 4.63 16.33 18.63 8.84 11.41 18.58 4.95 9.71 15.14 5.86 K intron_retention KLHL18 chr3R - chr3R_7834618_7834690 chr3R_7834617_7834618;chr3R_7834690_7834691 chr3R_7834085_7834617;chr3R_7834691_7834949 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5973,I_chr2L_7441485_7443583,I_chr2L_7443388_7443583 chr2L + chr2L_7440959_7443583 chr2L_7440958_7440959;chr2L_7443583_7443584 chr2L_7440895_7440958;chr2L_7443584_7443683 4.44 20.00 0.00 4.26 7.41 11.76 0.00 5.00 6.32 NA 7.50 8.00 4.44 0.00 7.41 11.43 0.00 13.16 5.00 7.76 3.57 0.00 5.13 NA NA 0.00 3.23 NA NA 0.00 11.76 6.67 NA 8.33 0.00 0.00 5.26 NA 0.00 0.00 NA 8.00 7.41 NA NA 0.00 0.00 NA 4.62 2.86 5.00 NA 0.00 0.00 0.00 2.78 0.00 5.26 K jcn_only_AD CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042891_5042960;chr2L_5042891_5042983 chr2L_5042891_5043077 chr2L_5042835_5042890;chr2L_5043078_5043083 14.02 14.02 18.02 21.49 16.42 14.29 11.86 20.69 18.60 13.25 18.33 18.09 29.33 26.21 23.08 20.75 24.39 10.00 13.01 19.37 24.29 10.26 15.91 16.81 13.86 9.09 7.87 11.34 3.67 6.31 16.80 5.38 4.96 18.67 12.50 11.34 13.19 13.33 8.70 4.31 4.69 24.85 23.86 5.44 6.43 9.50 14.81 2.09 13.30 26.67 13.24 27.06 19.35 6.58 21.88 15.89 20.17 4.19 K alternative_donor M(2)21AB,I_chr2L_107839_110405,I_chr2L_107957_108587,I_chr2L_110878_111037,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_108227_108587;chr2L_108102_108587;chr2L_107839_108587 chr2L_108347_108587 chr2L_108588_108687;chr2L_107833_107838 21.74 22.22 17.86 27.27 10.71 19.05 18.92 27.08 15.94 26.67 26.92 15.69 14.29 21.74 17.24 22.86 18.18 13.79 20.69 25.42 30.77 14.10 18.75 16.98 28.21 25.00 34.09 24.56 28.57 25.81 21.62 30.00 32.14 19.57 21.43 44.83 11.27 21.95 25.64 29.03 40.00 15.79 21.74 9.09 26.09 23.08 16.00 25.71 20.59 22.45 21.15 16.67 22.73 19.05 17.14 18.18 20.83 29.63 K jcn_only_AA mub,RI_chr3L_21901021_21901163,I_chr3L_21908756_21909179 chr3L + chr3L_21914088_21914192;chr3L_21914088_21914153;chr3L_21914088_21914141 chr3L_21914088_21914156 chr3L_21914067_21914087;chr3L_21914193_21914427 22.73 NA NA NA NA NA NA NA 20.69 NA NA NA NA NA NA NA NA NA NA 34.62 NA 11.54 18.92 13.64 NA NA NA NA NA 30.00 NA NA 25.00 NA NA NA 31.58 33.33 11.54 24.00 NA 16.67 NA 22.73 NA NA NA 42.86 NA NA 20.83 NA NA NA NA NA NA NA K intron_retention CG12084,I_chr3L_1494947_1496080,RI_chr3L_1499880_1501350 chr3L - chr3L_1492230_1492313 chr3L_1492229_1492230;chr3L_1492313_1492314 chr3L_1491984_1492229;chr3L_1492314_1492463 62.39 63.49 66.96 71.20 67.50 66.04 75.81 44.76 69.27 67.27 75.82 62.69 65.33 56.41 59.63 58.24 62.50 67.59 61.70 66.02 69.23 86.67 54.82 54.34 72.52 86.67 61.94 44.29 78.49 60.51 58.56 69.72 69.41 62.39 66.38 72.41 59.63 56.10 61.20 63.57 79.63 59.11 60.32 56.36 56.22 63.79 55.24 75.94 53.46 57.59 60.87 55.00 50.00 60.91 56.19 49.64 47.65 64.80 K intron_retention CG16838,I_chr3L_16125390_16125510 chr3L + chr3L_16125390_16125588 chr3L_16125389_16125390;chr3L_16125588_16125589 chr3L_16125290_16125389;chr3L_16125589_16125610 100.00 100.00 100.00 100.00 90.00 100.00 96.43 97.06 97.56 100.00 92.86 96.77 100.00 100.00 95.24 96.55 100.00 100.00 100.00 100.00 100.00 93.75 95.45 100.00 100.00 100.00 100.00 92.31 90.00 91.67 100.00 100.00 95.65 100.00 92.31 92.31 90.00 87.50 100.00 100.00 100.00 96.43 93.33 100.00 100.00 94.44 100.00 96.67 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 K jcn_only_AD Rcd6,I_chr2R_16518342_16520460,I_chr2R_16518620_16518916,RI_chr2R_16520388_16520855 chr2R - chr2R_16518620_16518916;chr2R_16518620_16520294 chr2R_16518620_16520855 chr2R_16518520_16518619;chr2R_16520856_16520918 3.03 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.03 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention DCAP,I_chr2R_6178643_6181126,RI_chr2R_6183553_6192101,I_chr2R_6188094_6192101 chr2R + chr2R_6180945_6181126 chr2R_6180944_6180945;chr2R_6181126_6181127 chr2R_6180937_6180944;chr2R_6181127_6181226 20.00 NA NA NA NA NA NA NA 20.00 NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Rbp1-like,R_chrX_13277657_13278332 chrX - chrX_13275077_13278332 chrX_13275076_13275077;chrX_13278332_13278333 chrX_13274199_13275076;chrX_13278333_13278432 35.71 24.00 53.33 87.50 23.08 NA NA 45.45 52.38 41.67 NA 61.90 NA NA 54.55 70.00 NA 35.71 NA 36.17 46.15 20.00 22.64 23.68 30.00 50.00 39.13 29.55 56.10 52.38 58.33 18.18 26.44 40.00 24.14 15.38 27.78 22.86 22.73 45.45 28.57 33.33 54.55 60.00 23.08 35.42 21.43 27.08 35.29 17.65 36.00 35.71 39.13 23.08 58.33 26.47 45.00 48.65 K intron_retention Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11837971_11840340 chr2R_11837970_11837971;chr2R_11840340_11840341 chr2R_11837919_11837970;chr2R_11840341_11840725 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 NA 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 NA NA NA K intron_retention pnt,I_chr3R_19118404_19119566,I_chr3R_19139278_19163617,I_chr3R_19181524_19181702 chr3R - chr3R_19118404_19119572 chr3R_19118403_19118404;chr3R_19119572_19119573 chr3R_19118304_19118403;chr3R_19119573_19119666 5.26 0.00 0.00 4.35 0.00 6.67 9.09 7.41 10.53 0.00 0.00 11.76 7.69 21.05 7.14 10.53 9.52 16.00 7.41 2.99 16.00 1.64 0.00 5.41 0.00 0.00 10.00 7.14 5.56 2.94 NA 0.00 5.45 10.00 3.45 0.00 5.26 8.33 3.77 2.94 7.41 9.62 0.00 4.76 3.77 0.00 9.09 0.00 5.26 3.77 0.00 12.50 5.26 0.00 12.90 0.00 5.26 6.56 K jcn_only_AA Lap1 chr2R + chr2R_10823524_10823631;chr2R_10823524_10823599 chr2R_10823524_10823596 chr2R_10823191_10823523;chr2R_10823632_10823803 91.65 NA 91.30 92.00 NA NA 85.71 89.36 94.12 NA NA 87.10 NA NA NA 93.75 NA NA 96.15 95.56 NA 90.32 93.10 NA NA NA 96.88 NA NA 88.00 NA NA 95.00 90.24 NA 90.00 NA NA 85.00 93.55 NA 82.76 90.91 88.00 NA NA NA 94.74 86.84 NA 93.75 NA NA NA 100.00 NA NA 92.86 K intron_retention CG18854,I_chr2L_9790307_9790615,I_chr2L_9790310_9790453,I_chr2L_9790310_9790556 chr2L - chr2L_9790307_9790615 chr2L_9790306_9790307;chr2L_9790615_9790616 chr2L_9790210_9790306;chr2L_9790616_9790656 85.35 NA NA 85.71 NA NA NA 90.00 72.73 NA NA NA NA NA NA NA NA NA NA NA NA NA 85.00 NA NA NA 60.00 NA NA NA NA NA NA 100.00 NA 90.00 NA NA NA 58.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention mbl,I_chr2R_13163569_13203579 chr2R + chr2R_13239811_13249484 chr2R_13239810_13239811;chr2R_13249484_13249485 chr2R_13239634_13239810;chr2R_13249485_13249602 0.00 NA NA NA NA 0.00 NA 9.52 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 6.67 NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 5.00 NA NA NA NA 5.00 0.00 NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA mu2,I_chr3L_1945382_1945647 chr3L - chr3L_1945529_1945647;chr3L_1945574_1945647 chr3L_1945592_1945647 chr3L_1945648_1945655;chr3L_1945437_1945528 68.18 NA 54.17 70.21 70.83 NA 80.49 69.23 67.16 NA 67.86 68.89 62.50 50.00 55.88 64.41 87.50 52.17 NA 66.67 47.83 NA 66.67 68.18 NA 68.75 69.23 NA NA NA 70.00 NA NA 75.61 NA 71.43 NA NA 66.67 68.75 NA 69.57 62.50 NA NA NA 70.00 85.00 53.70 57.69 70.00 NA NA NA 58.97 NA 77.27 66.67 K alternative_acceptor nct,I_chr3R_20679262_20679308 chr3R + chr3R_20679262_20679324;chr3R_20679262_20679333 chr3R_20679262_20679308 chr3R_20679193_20679261;chr3R_20679334_20679393 2.59 1.16 2.90 1.82 1.79 3.70 3.09 1.04 1.36 0.00 2.99 2.59 3.77 0.00 3.12 2.70 0.00 1.54 0.00 1.64 0.00 2.67 3.91 4.31 3.33 1.82 3.67 7.14 4.17 2.99 10.53 2.00 2.86 3.37 1.89 5.17 5.31 3.57 1.79 4.49 1.72 1.68 2.00 2.25 3.28 0.00 2.90 2.44 2.30 4.04 3.20 5.26 1.85 1.61 1.47 3.08 2.33 2.56 K alternative_donor I_chr2R_20461194_20461274,Start1,I_chr2R_20463661_20463716 chr2R + chr2R_20462257_20462481 chr2R_20462424_20462481 chr2R_20462482_20462610;chr2R_20462123_20462256 100.00 100.00 88.89 95.45 100.00 100.00 100.00 100.00 94.12 NA 100.00 94.44 100.00 100.00 100.00 100.00 87.50 88.89 100.00 100.00 100.00 100.00 93.75 100.00 NA 100.00 88.89 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 NA 100.00 100.00 90.91 NA 100.00 90.91 100.00 100.00 100.00 91.67 100.00 83.33 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG9904 chrX + chrX_2515346_2515418 chrX_2515346_2515411 chrX_2514858_2515345;chrX_2515419_2516173 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor Grip71 chr2L + chr2L_18709128_18709186 chr2L_18709139_18709186 chr2L_18709187_18709481;chr2L_18708849_18709127 5.32 5.88 0.00 4.76 0.00 6.67 NA 0.00 7.41 NA 6.67 0.00 NA NA 6.67 5.88 NA 6.67 4.55 2.78 5.88 NA 0.00 NA NA 6.67 9.09 NA NA NA 13.33 NA 0.00 7.41 NA NA 9.52 0.00 0.00 3.23 NA 2.94 10.53 NA 13.33 NA 6.67 NA 2.94 NA 4.35 0.00 NA NA 0.00 NA NA 6.67 K alternative_last_exon cpx,RI_chr3R_124308_128247,I_chr3R_125269_125511 chr3R + chr3R_124308_128247 chr3R_124308_125511 chr3R_128248_129383 chr3R_125512_127409 chr3R_124243_124307 50.00 NA NA 81.82 NA NA NA 50.00 50.00 NA NA 100.00 NA NA NA 50.00 NA NA 100.00 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG32576,I_chrX_16182170_16182415 chrX - chrX_16182170_16182415 chrX_16182170_16182257;chrX_16182350_16182415 chrX_16182258_16182349 chrX_16182070_16182169;chrX_16182416_16182515 100.00 100.00 100.00 98.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG32230,RI_chr3L_23332465_23332529,RI_chr3L_23332577_23334556,I_chr3L_23332781_23334557,RI_chr3L_23332781_23338942 chr3L + chr3L_23332577_23332633 chr3L_23332576_23332577;chr3L_23332633_23332634 chr3L_23332530_23332576;chr3L_23332634_23332780 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 1.99 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RN-tre chr2R - chr2R_9877474_9878070 chr2R_9877473_9877474;chr2R_9878070_9878071 chr2R_9877190_9877473;chr2R_9878071_9878197 96.15 100.00 93.75 100.00 NA 100.00 82.61 95.24 94.74 91.67 NA 96.00 NA 92.86 100.00 100.00 NA 100.00 100.00 100.00 100.00 95.45 93.75 100.00 100.00 85.71 100.00 NA 92.86 94.12 96.15 100.00 96.43 96.15 92.86 94.44 NA 100.00 95.83 100.00 95.24 100.00 100.00 100.00 95.45 96.15 91.67 94.23 93.75 100.00 94.74 100.00 100.00 NA 80.00 94.12 100.00 90.62 K intron_retention RhoGAP93B chr3R - chr3R_16913495_16913597 chr3R_16913494_16913495;chr3R_16913597_16913598 chr3R_16913154_16913494;chr3R_16913598_16913769 0.00 0.00 3.70 10.34 0.00 0.00 0.00 0.00 2.86 NA 0.00 0.00 0.00 0.00 0.00 8.70 NA 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 NA 9.09 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 NA 2.44 0.00 0.00 0.00 0.00 0.00 NA 0.00 K intron_retention CG5514,RI_chr3R_23768206_23768306,Gp93 chr3R + chr3R_23767856_23768156 chr3R_23767855_23767856;chr3R_23768156_23768157 chr3R_23765429_23767855;chr3R_23768157_23768167 26.32 NA NA NA NA NA NA 33.33 26.32 NA NA 28.00 NA NA NA NA NA NA NA 42.86 NA 15.38 NA 50.00 NA NA 37.50 27.27 21.43 58.33 NA 25.00 7.69 45.45 NA 15.38 NA NA 22.73 21.05 25.00 35.29 NA 37.50 9.09 20.00 NA 23.08 23.08 35.71 23.53 NA NA NA NA 33.33 46.15 NA K alternative_donor Psn,RI_chr3L_20430213_20430358 chr3L + chr3L_20427346_20427647;chr3L_20427445_20427647 chr3L_20427403_20427647 chr3L_20427648_20427812;chr3L_20427187_20427345 77.24 79.85 75.73 73.77 74.39 75.27 83.04 72.73 78.35 73.58 77.14 79.75 68.85 76.00 76.04 83.33 70.77 84.51 77.78 78.75 80.56 84.16 76.51 77.10 76.19 75.00 75.57 75.00 62.50 81.18 72.60 75.00 80.52 77.12 75.34 82.35 81.93 75.89 80.34 75.35 81.25 77.53 80.88 81.75 78.29 77.24 75.94 83.33 78.57 80.47 75.16 81.82 80.22 81.36 79.57 75.57 75.89 80.25 K alternative_acceptor CG14194 chrX + chrX_19088052_19088400;chrX_19088052_19088456 chrX_19088052_19088528 chrX_19087981_19088051;chrX_19088529_19089031 0.00 0.00 0.00 0.00 2.33 1.92 1.45 0.00 0.00 2.50 2.70 0.00 0.00 0.00 1.72 0.00 0.00 0.00 2.04 0.00 0.00 1.15 1.09 1.15 1.72 0.00 0.99 0.00 2.00 0.00 0.00 0.00 0.00 1.39 0.00 1.82 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 1.79 0.00 0.00 K intron_retention Abi,RI_chr3R_9946195_9946332 chr3R - chr3R_9946195_9946416 chr3R_9946194_9946195;chr3R_9946416_9946417 chr3R_9946095_9946194;chr3R_9946417_9946432 0.00 0.00 0.00 0.00 0.00 0.00 1.08 1.02 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 0.00 1.91 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor bwa,I_chr2L_20073310_20073377 chr2L + chr2L_20066899_20069052 chr2L_20066899_20069047 chr2L_20066389_20066898;chr2L_20069053_20069304 98.21 100.00 96.55 98.18 96.88 100.00 97.78 100.00 96.77 97.30 100.00 98.21 100.00 100.00 96.77 100.00 100.00 100.00 100.00 98.18 96.30 98.75 97.62 100.00 100.00 100.00 100.00 97.14 98.57 97.87 95.65 97.30 100.00 97.73 100.00 97.06 98.21 96.55 97.96 98.80 98.08 98.33 100.00 97.56 98.48 98.21 97.06 98.39 94.44 100.00 97.06 100.00 95.45 94.44 100.00 100.00 96.43 98.31 K intron_retention CG13784,I_chr2L_7209439_7209522,I_chr2L_7219131_7219918 chr2L - chr2L_7219131_7219943 chr2L_7219130_7219131;chr2L_7219943_7219944 chr2L_7219031_7219130;chr2L_7219944_7219956 97.78 94.74 100.00 100.00 94.12 100.00 100.00 100.00 98.00 95.45 100.00 97.14 94.12 95.45 95.24 97.56 100.00 94.74 100.00 98.15 95.45 100.00 100.00 100.00 95.00 100.00 100.00 96.00 96.77 97.06 100.00 100.00 100.00 95.12 95.65 100.00 97.67 94.12 95.45 96.08 100.00 97.62 94.74 94.23 100.00 100.00 86.36 97.78 100.00 88.89 100.00 100.00 92.86 87.50 96.67 100.00 100.00 100.00 K intron_retention gfzf,MB8.chr3R.pasa.66 chr3R - chr3R_2972606_2972666 chr3R_2972605_2972606;chr3R_2972666_2972667 chr3R_2972477_2972605;chr3R_2972667_2972814 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 K intron_retention RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19802108_19802174 chr3L_19802107_19802108;chr3L_19802174_19802175 chr3L_19801844_19802107;chr3L_19802175_19802674 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 3.85 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG3760,CG3770,CG12851 chr2R + chr2R_20826741_20826793;chr2R_20826741_20826796 chr2R_20826741_20826799 chr2R_20826672_20826740;chr2R_20826800_20826860 3.77 2.44 2.78 5.56 3.23 13.16 4.00 2.63 1.59 6.06 7.69 0.00 0.00 4.35 5.88 4.17 10.34 4.00 0.00 4.62 6.90 2.13 6.90 1.47 4.76 3.70 8.16 8.00 3.12 4.76 0.00 2.17 6.35 12.00 6.12 2.63 3.23 2.70 2.74 1.43 3.77 5.19 4.55 2.86 2.17 4.65 3.64 1.69 8.82 2.33 2.99 2.94 3.77 5.00 3.23 6.25 5.26 3.49 K alternative_acceptor CG5746,Golgin84 chr3R - chr3R_20182174_20182262 chr3R_20182208_20182262 chr3R_20182263_20183645;chr3R_20181719_20182173 89.19 94.44 87.50 100.00 81.82 93.33 94.74 90.91 84.38 90.00 84.62 88.89 93.33 92.86 77.78 84.21 88.89 93.33 94.44 87.88 84.62 87.50 90.48 95.65 91.67 94.74 93.75 100.00 91.67 83.33 80.00 90.91 73.33 87.50 80.00 76.92 96.00 94.12 89.66 84.62 78.57 93.55 87.50 100.00 92.31 81.82 87.50 72.73 84.85 89.19 96.00 75.00 84.62 85.00 100.00 89.47 94.44 81.25 K alternative_donor MB8.chr3R.pasa.66,CG1091,RI_chr3R_2910204_2910255,RI_chr3R_2910490_2910686,RI_chr3R_2911041_2911135,RI_chr3R_2946518_2946663 chr3R - chr3R_2910204_2910264 chr3R_2910204_2910255 chr3R_2910104_2910203;chr3R_2910265_2910355 2.90 3.70 3.77 4.44 2.86 2.17 3.28 4.35 4.76 3.23 0.00 3.49 2.78 2.70 8.00 4.44 5.13 2.70 4.65 4.76 3.33 0.00 1.35 1.14 2.63 3.57 3.33 13.79 1.82 1.56 7.23 0.00 0.00 3.57 1.47 1.56 1.28 3.75 4.88 3.96 0.00 4.29 3.03 1.43 3.23 2.44 3.30 5.41 2.44 2.86 0.00 4.17 1.37 2.44 1.89 2.78 2.90 1.49 K alternative_acceptor CG1815,I_chr3R_27501104_27501176 chr3R + chr3R_27495663_27496497 chr3R_27495663_27496485 chr3R_27495539_27495662;chr3R_27496498_27497517 85.00 77.78 83.33 77.78 71.43 94.12 68.18 80.65 78.05 88.89 92.86 75.00 86.67 91.67 77.78 85.71 92.86 82.35 88.24 75.86 100.00 75.00 80.95 95.00 90.91 88.46 95.00 91.67 71.43 92.86 80.95 88.89 79.17 85.71 73.33 76.47 95.45 66.67 85.00 79.41 66.67 87.50 83.33 75.00 NA 80.00 NA 87.50 87.88 90.91 85.00 93.33 100.00 NA 83.33 NA NA 90.00 K intron_retention Nmda1,R_chr2R_8766216_8766562,I_chr2R_8766652_8766956,I_chr2R_8766728_8766791,I_chr2R_8766728_8767623 chr2R - chr2R_8766652_8767193 chr2R_8766651_8766652;chr2R_8767193_8767194 chr2R_8766628_8766651;chr2R_8767194_8767290 12.93 13.04 11.63 21.05 9.52 12.50 21.21 10.42 17.54 NA NA 8.82 18.52 20.00 18.92 7.76 7.69 15.15 8.70 8.54 0.00 3.75 14.29 13.33 NA 0.00 25.93 25.00 43.33 16.67 9.09 0.00 NA 15.00 21.43 5.56 9.52 23.08 20.00 23.81 10.53 12.82 18.18 26.67 8.70 3.33 9.09 15.00 14.93 15.00 12.50 10.53 10.53 NA 20.00 6.67 14.29 7.41 K intron_retention Snx6,RI_chr2L_8218680_8218853,I_chr2L_8230332_8238998 chr2L - chr2L_8218680_8219115 chr2L_8218679_8218680;chr2L_8219115_8219116 chr2L_8218580_8218679;chr2L_8219116_8219215 6.59 8.98 7.95 5.28 3.82 4.22 5.10 6.59 6.18 6.25 8.88 8.56 12.14 7.59 7.69 8.82 5.85 8.09 6.41 9.17 10.24 2.63 6.45 5.82 5.06 3.37 6.56 2.05 7.45 7.95 7.73 6.00 3.12 6.58 8.72 8.20 4.38 5.05 7.49 7.92 3.74 5.42 7.05 5.70 5.19 11.28 6.34 10.53 6.92 3.95 5.00 7.73 7.49 8.73 6.61 8.01 4.98 7.33 K jcn_only_AA zormin,I_chr3L_2128755_2129053,RI_chr3L_2139943_2140057 chr3L - chr3L_2129785_2130792 chr3L_2129787_2130792 chr3L_2130793_2131250;chr3L_2129580_2129784 100.00 100.00 100.00 NA NA NA 100.00 100.00 97.50 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA 100.00 98.51 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 NA K jcn_only_AD noncoding_7598,snoRNA:Me28S-A3407a chr2R + chr2R_13586950_13587362 chr2R_13586955_13587362 chr2R_13587363_13587402;chr2R_13586856_13586949 80.00 NA 68.18 77.78 NA NA 89.19 90.91 74.07 NA NA 79.41 NA 85.71 NA 77.61 NA NA 83.87 80.00 NA NA NA 79.17 68.18 NA 76.92 NA NA NA 76.79 NA NA 77.42 88.00 80.00 NA NA NA NA NA 82.76 86.36 NA NA 78.26 NA NA 71.23 90.00 92.11 NA NA NA NA 80.00 87.10 NA K jcn_only_AA Iswi chr2R + chr2R_8524243_8524348;chr2R_8524243_8524316 chr2R_8524243_8524328 chr2R_8524226_8524242;chr2R_8524349_8524495 0.00 5.41 1.96 0.95 0.00 2.70 1.14 2.30 0.65 NA 0.00 0.00 4.26 2.33 1.85 0.00 0.00 2.50 1.41 1.04 0.00 4.55 0.00 5.56 NA 0.00 0.00 NA NA 0.00 5.26 NA NA 0.00 0.00 NA 0.00 0.00 0.00 3.45 NA 1.08 0.00 0.00 NA 0.00 0.00 0.00 2.27 0.00 0.00 0.00 NA NA 0.00 0.00 3.70 0.00 K intron_retention CG7112 chr3L + chr3L_8341790_8341848 chr3L_8341789_8341790;chr3L_8341848_8341849 chr3L_8341602_8341789;chr3L_8341849_8342945 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 1.72 2.22 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention cul-2,I_chr2L_21662021_21662083 chr2L + chr2L_21662632_21662688 chr2L_21662631_21662632;chr2L_21662688_21662689 chr2L_21662518_21662631;chr2L_21662689_21663671 0.00 0.81 0.00 0.96 0.00 0.00 0.00 0.49 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 2.30 1.32 0.00 0.00 0.00 0.59 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5830,I_chr3L_15996923_15996998 chr3L - chr3L_15997175_15997448 chr3L_15997174_15997175;chr3L_15997448_15997449 chr3L_15996999_15997174;chr3L_15997449_15997835 7.14 0.00 5.56 13.56 0.00 10.53 9.30 7.89 7.89 NA 0.00 4.76 5.41 5.56 2.78 8.62 6.25 8.33 5.26 5.26 6.67 14.29 12.12 NA 10.53 5.00 31.58 33.33 25.93 0.00 7.69 0.00 12.24 2.90 5.56 12.90 14.29 NA 5.56 5.71 0.00 10.87 7.14 0.00 13.33 0.00 0.00 4.44 9.59 17.65 9.09 NA NA NA 12.82 25.00 14.29 2.50 K jcn_only_AA eIF2B-delta chr2R + chr2R_19274146_19274312;chr2R_19274146_19274529 chr2R_19274146_19274464 chr2R_19274016_19274145 1.41 0.00 2.70 5.71 NA 0.00 3.33 0.00 0.00 NA 2.94 1.06 2.94 2.27 0.00 0.00 2.94 0.00 1.96 1.41 0.00 1.64 1.85 2.27 0.00 5.56 0.00 2.13 0.00 0.00 2.27 NA NA 1.41 3.85 0.00 0.00 0.00 2.17 0.00 5.00 0.00 0.00 0.00 NA 4.35 1.56 0.00 2.13 3.92 0.00 2.08 0.00 4.00 0.00 3.45 0.00 5.00 K intron_retention CG12877 chr3R + chr3R_23535942_23535998 chr3R_23535941_23535942;chr3R_23535998_23535999 chr3R_23535348_23535941;chr3R_23535999_23536258 0.00 0.00 0.00 5.38 0.00 0.00 0.00 1.28 0.00 0.00 0.00 2.15 2.56 0.00 0.00 0.00 4.26 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 4.76 3.75 6.35 3.12 1.59 0.00 0.00 1.06 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.65 1.18 0.00 0.00 0.00 0.00 0.00 1.59 0.00 K alternative_acceptor CdGAPr chr2L - chr2L_19779331_19779399 chr2L_19779334_19779399 chr2L_19779400_19779503;chr2L_19779018_19779330 26.87 30.43 28.26 21.13 27.78 40.91 30.61 27.59 27.50 18.52 26.47 24.64 27.27 28.21 15.22 26.42 25.00 16.33 21.05 27.96 30.00 24.21 28.00 28.30 25.00 17.78 29.31 29.51 31.65 23.38 22.73 23.26 30.14 24.62 21.05 34.04 28.05 18.37 33.33 20.56 30.77 26.03 20.69 23.46 27.66 26.87 22.86 25.50 29.17 18.92 31.67 28.57 40.00 26.47 25.49 29.63 22.58 34.85 K alternative_acceptor tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563461_565293 chr3R_563503_565293 chr3R_565294_565301;chr3R_563195_563460 76.47 76.00 68.00 90.91 72.00 65.22 51.11 78.79 67.82 83.33 76.47 83.33 86.36 86.96 82.61 83.72 78.95 75.00 65.71 74.58 65.00 76.00 74.07 65.62 73.33 76.67 74.07 71.43 65.22 73.68 74.29 66.67 89.47 78.38 81.82 76.47 84.85 80.00 62.50 82.76 81.82 74.55 76.47 88.89 100.00 75.00 65.38 89.47 76.47 75.00 89.66 83.33 72.22 87.50 88.57 84.62 62.50 77.27 K jcn_only_AD CG12567,I_chr2LHet_21570_31347,I_chr2LHet_21570_31874 chr2LHet - chr2LHet_21570_32923 chr2LHet_21570_32572 chr2LHet_21470_21569;chr2LHet_32924_32973 100.00 100.00 100.00 100.00 100.00 100.00 99.15 100.00 99.21 100.00 100.00 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 98.80 NA 100.00 99.17 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 96.55 100.00 99.32 100.00 100.00 100.00 NA 100.00 100.00 96.15 100.00 100.00 K intron_retention CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907784_9908424 chr2L_9907783_9907784;chr2L_9908424_9908425 chr2L_9907756_9907783;chr2L_9908425_9908505 23.47 21.28 31.58 24.77 28.57 28.57 32.08 22.62 26.09 35.71 25.93 28.57 40.54 21.74 28.21 25.33 23.08 20.00 22.58 19.10 24.14 23.94 16.46 20.75 21.95 10.53 22.73 31.03 26.83 35.48 22.86 26.92 28.33 22.22 26.67 17.91 19.61 16.67 22.45 24.00 26.92 23.47 35.29 21.15 31.82 20.93 22.86 34.62 26.25 26.32 21.74 16.67 18.18 10.00 19.67 22.86 17.65 26.83 K alternative_donor CG15072,RI_chr2R_14576128_14579545,I_chr2R_14589693_14590032 chr2R + chr2R_14575874_14579545;chr2R_14576017_14579545;chr2R_14576247_14579545;chr2R_14576056_14579545;chr2R_14576154_14579545 chr2R_14576049_14579545 chr2R_14579546_14579571;chr2R_14575805_14575873 12.50 0.00 0.00 7.69 33.33 16.67 11.76 5.56 20.00 12.50 11.11 6.67 11.76 8.33 37.50 16.67 22.22 14.29 13.33 10.00 25.00 14.29 11.11 20.00 0.00 12.50 14.29 0.00 28.57 28.57 33.33 0.00 18.18 13.33 8.33 12.50 12.50 0.00 20.00 23.53 0.00 21.43 22.22 9.09 0.00 25.00 33.33 0.00 12.50 0.00 16.67 20.00 25.00 0.00 0.00 0.00 25.00 0.00 K intron_retention Eb1,I_chr2R_2642491_2642549 chr2R + chr2R_2642487_2642549 chr2R_2642486_2642487;chr2R_2642549_2642550 chr2R_2642404_2642486;chr2R_2642550_2642622 0.41 0.56 0.00 0.50 0.00 0.43 0.78 0.88 0.88 0.00 0.64 0.86 1.09 0.48 0.35 1.20 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.43 1.69 0.00 0.00 0.92 0.62 0.00 0.81 0.24 1.03 1.09 0.00 0.00 0.00 0.49 0.96 0.41 0.00 0.00 0.67 0.86 0.00 0.72 0.94 0.47 0.00 0.00 0.72 1.91 0.00 0.00 1.09 0.31 K intron_retention I_chr3L_1494947_1496080,pUf68,cue chr3L - chr3L_1505793_1516912 chr3L_1505792_1505793;chr3L_1516912_1516913 chr3L_1504388_1505792;chr3L_1516913_1517253 11.11 7.14 10.00 11.63 13.16 12.24 17.02 9.76 14.94 14.29 15.62 9.18 25.00 16.00 19.51 11.86 18.52 10.42 15.56 11.11 7.50 71.43 5.00 8.82 9.52 4.44 10.00 18.18 11.11 17.14 12.50 NA 11.76 14.93 9.38 16.28 12.35 15.56 6.67 12.50 NA 11.96 13.95 5.00 0.00 2.78 4.65 10.00 9.41 0.00 10.91 13.16 3.33 0.00 11.36 4.65 0.00 9.09 K intron_retention CG33558,I_chr2R_2816779_2817354,EI_chr2R_2820947_2821570,CREI_chr2R_2832933_2850384 chr2R - chr2R_2822614_2822719 chr2R_2822613_2822614;chr2R_2822719_2822720 chr2R_2822311_2822613;chr2R_2822720_2822800 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CREF_chr3R_5589662_5589762,RpS29,snoRNA:Psi18S-1275,CG8500 chr3R + chr3R_5603919_5604340 chr3R_5603918_5603919;chr3R_5604340_5604341 chr3R_5603803_5603918;chr3R_5604341_5604440 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.10 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG15881,RI_chr3L_19799338_19799394,RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19799338_19799405;chr3L_19798419_19799405 chr3L_19798903_19799405 chr3L_19799406_19799494;chr3L_19798405_19798418 0.00 0.00 0.00 0.00 NA NA 0.00 3.57 0.00 NA 0.00 0.00 NA NA NA 5.26 NA 0.00 4.00 2.04 4.17 0.00 NA 3.03 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.33 1.52 NA 0.00 NA 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 K intron_retention Traf-like,I_chrX_16309163_16309641,I_chrX_16309212_16309689,I_chrX_16309561_16309641,I_chrX_16309561_16309689,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16309619_16309689 chrX_16309618_16309619;chrX_16309689_16309690 chrX_16309562_16309618;chrX_16309690_16309741 19.57 14.29 24.07 19.57 17.39 8.51 18.87 16.25 16.81 18.52 21.21 18.42 29.17 20.00 10.42 22.45 15.79 18.87 15.09 24.69 12.50 40.00 32.65 20.34 28.57 17.07 28.85 57.89 15.62 19.35 25.71 21.74 33.33 19.72 16.67 17.86 17.76 18.00 15.00 23.53 16.67 23.26 21.95 23.40 33.33 20.83 23.33 33.33 17.24 18.37 24.64 12.77 24.14 13.89 14.00 17.39 23.94 33.33 K jcn_only_AA Hel25E chr2L - chr2L_5541970_5542182 chr2L_5541977_5542182 chr2L_5542183_5542310;chr2L_5541723_5541969 98.92 98.92 98.57 99.24 100.00 99.31 98.80 98.25 98.90 100.00 100.00 99.44 99.32 98.97 99.43 99.32 97.48 99.29 98.33 98.69 97.64 99.02 99.48 97.35 98.31 98.62 99.33 97.75 100.00 100.00 98.97 98.21 100.00 97.65 99.29 98.32 98.85 98.70 100.00 100.00 100.00 99.25 97.24 97.83 98.44 98.19 98.96 100.00 98.81 98.91 98.60 99.21 100.00 99.26 98.12 97.92 98.58 98.21 K intron_retention CG14230 chrX + chrX_19600147_19600208 chrX_19600146_19600147;chrX_19600208_19600209 chrX_19599039_19600146;chrX_19600209_19600381 0.00 0.00 0.00 3.57 0.00 0.00 4.88 3.45 0.00 0.00 NA 0.00 0.00 0.00 6.67 0.00 NA 0.00 0.00 5.13 0.00 NA 6.25 7.89 NA 6.67 5.26 9.52 0.00 4.76 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 6.25 0.00 4.35 0.00 0.00 0.00 0.00 0.00 3.85 0.00 3.64 5.00 4.17 0.00 0.00 3.23 0.00 0.00 0.00 N intron_retention Smr,I_chrX_12625852_12636351,REI_chrX_12635675_12636351 chrX - chrX_12635693_12636351 chrX_12635692_12635693;chrX_12636351_12636352 chrX_12636352_12636441 100.00 NA NA 66.67 NA NA NA 100.00 100.00 NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG6448,I_chr2L_22156816_22158491 chr2L + chr2L_22157056_22158512 chr2L_22157055_22157056;chr2L_22158512_22158513 chr2L_22157023_22157055;chr2L_22158513_22158591 8.61 NA NA NA NA NA NA NA NA NA 9.52 NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG4825,RI_chr3L_20516382_20516451 chr3L - chr3L_20516382_20516451 chr3L_20516385_20516451 chr3L_20516452_20516551;chr3L_20516303_20516381 97.73 98.21 96.30 97.62 100.00 100.00 96.88 91.84 98.97 100.00 95.65 97.47 96.43 94.87 97.37 95.65 100.00 93.33 100.00 98.04 93.75 95.24 100.00 97.22 97.56 96.55 96.08 97.44 100.00 100.00 100.00 100.00 97.67 94.74 96.30 100.00 96.67 96.36 100.00 97.65 97.73 98.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.25 98.55 94.87 100.00 97.96 96.61 100.00 95.65 100.00 K alternative_donor CG17600,RI_chrX_21942934_21943180 chrX + chrX_21942905_21943180 chrX_21942934_21943180 chrX_21943181_21943280;chrX_21942834_21942904 2.78 0.00 4.76 6.25 NA 0.00 0.00 3.85 3.57 0.00 16.67 7.32 0.00 NA 6.25 5.88 0.00 NA 6.67 5.00 7.14 0.00 4.88 5.13 0.00 0.00 3.85 3.03 5.88 0.00 3.45 0.00 0.00 3.45 0.00 5.00 0.00 0.00 4.44 0.00 0.00 5.88 0.00 0.00 0.00 4.55 2.78 0.00 0.00 5.13 3.23 0.00 0.00 3.03 NA 0.00 3.23 2.17 K intron_retention CG31324,I_chr3R_21933065_21933306,F_chr3R_21933069_21950156 chr3R + chr3R_21933065_21950156 chr3R_21933064_21933065;chr3R_21950156_21950157 chr3R_21932969_21933064;chr3R_21950157_21950256 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 2.86 1.25 0.00 0.00 0.00 1.82 0.00 0.00 0.00 1.19 2.00 1.40 0.00 1.82 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.16 0.00 4.65 2.44 0.00 0.00 0.00 1.27 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.94 N cassette CG11063 chrX - chrX_13720986_13721372 chrX_13720986_13721075;chrX_13721154_13721372 chrX_13721076_13721153 chrX_13720820_13720985;chrX_13721373_13721542 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 84.42 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG16912,I_chr2R_20674247_20674291,I_chr2R_20674654_20674897,RI_chr2R_20676692_20676888 chr2R - chr2R_20669457_20669541 chr2R_20669484_20669541 chr2R_20669542_20669730;chr2R_20669244_20669456 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 95.24 94.12 100.00 100.00 100.00 100.00 100.00 100.00 94.74 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 95.45 100.00 100.00 96.43 100.00 100.00 100.00 100.00 95.24 100.00 95.65 92.86 95.45 100.00 100.00 100.00 100.00 96.00 97.14 95.24 K alternative_donor lkb1 chr3R + chr3R_9502655_9502737 chr3R_9502667_9502737 chr3R_9502738_9503934;chr3R_9502444_9502654 77.78 78.95 66.67 75.00 87.50 92.31 70.00 81.82 76.92 NA NA 80.00 90.00 72.73 46.15 77.78 75.00 90.00 90.00 77.78 69.23 80.00 75.00 80.00 69.23 70.00 69.57 53.85 68.18 76.92 62.50 73.33 74.29 86.36 82.35 73.33 72.73 81.25 78.95 77.27 76.19 80.00 66.67 76.47 73.33 77.42 84.62 88.89 88.00 90.00 78.26 100.00 88.89 NA 80.00 88.89 80.00 84.62 K alternative_last_exon CG30387,I_chr2R_17184688_17191389 chr2R + chr2R_17195664_17195956 chr2R_17195664_17195796 chr2R_17195957_17196936 chr2R_17195797_17195865 chr2R_17195439_17195663 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette Nedd4,I_chr3L_17534127_17534409,I_chr3L_17534504_17535990,I_chr3L_17535485_17536604,I_chr3L_17536186_17536604,I_chr3L_17536713_17536777,I_chr3L_17536813_17536863 chr3L + chr3L_17534504_17536863 chr3L_17534504_17535299;chr3L_17535485_17535650;chr3L_17535913_17535990;chr3L_17536063_17536604;chr3L_17536713_17536863 chr3L_17535300_17535484;chr3L_17535651_17535912;chr3L_17535991_17536062;chr3L_17536605_17536712 chr3L_17534419_17534503;chr3L_17536864_17536877 97.50 90.91 92.31 66.67 83.33 90.00 62.50 93.75 100.00 92.86 100.00 100.00 100.00 88.89 90.00 100.00 100.00 91.67 71.43 97.50 88.89 100.00 100.00 93.75 88.89 100.00 94.12 100.00 94.12 93.33 100.00 100.00 100.00 94.12 100.00 100.00 95.45 100.00 85.71 100.00 90.91 96.15 100.00 100.00 100.00 100.00 90.00 100.00 91.67 100.00 100.00 90.91 100.00 87.50 100.00 100.00 100.00 93.75 K intron_retention Myo61F chr3L + chr3L_1329321_1329400 chr3L_1329320_1329321;chr3L_1329400_1329401 chr3L_1329224_1329320;chr3L_1329401_1329571 1.19 0.58 0.62 2.39 0.00 1.25 0.85 1.23 0.55 0.00 0.70 0.79 0.00 1.20 1.28 1.72 1.33 0.00 0.46 1.75 0.85 0.55 2.53 0.00 3.23 1.26 3.31 3.25 3.64 1.60 0.45 1.40 0.00 1.39 1.48 0.00 0.00 1.57 0.00 1.79 5.92 1.47 0.00 1.38 0.64 2.65 0.00 1.19 1.30 1.25 0.44 0.71 1.92 0.72 1.40 0.90 0.59 0.96 K alternative_acceptor SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_16982134_16983336;chr3R_16982134_16982890;chr3R_16982134_16983164;chr3R_16982134_16983159 chr3R_16982134_16983218 chr3R_16982126_16982133;chr3R_16983337_16983376 25.00 23.53 42.11 28.00 33.33 26.67 13.89 22.50 21.74 33.33 30.00 18.42 20.00 20.83 26.32 28.12 18.75 28.57 17.86 25.00 46.15 41.67 26.32 42.86 13.33 21.43 16.67 28.57 25.00 18.18 15.38 14.29 50.00 17.95 12.50 15.38 11.11 25.00 14.29 45.45 36.36 22.50 21.43 42.86 66.67 43.75 25.00 43.48 27.66 50.00 11.76 23.08 22.22 40.00 25.00 44.44 12.50 21.43 K intron_retention I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10065344,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10064983_10065365 chr2R_10064982_10064983;chr2R_10065365_10065366 chr2R_10064680_10064982;chr2R_10065366_10065380 27.27 18.92 40.00 32.35 44.00 36.36 52.00 34.78 28.57 22.22 36.36 36.73 30.30 30.77 42.11 37.25 25.00 25.71 28.57 28.24 26.92 34.48 17.57 20.00 27.27 42.31 18.75 15.00 20.00 20.83 40.00 24.14 39.53 37.50 23.68 25.00 17.28 17.78 14.86 23.61 36.00 23.88 19.23 18.87 23.08 37.14 21.05 40.43 36.36 12.82 18.00 23.08 29.03 29.41 30.95 25.93 22.22 31.71 K intron_retention CG32486,I_chr3L_3058125_3060004,I_chr3L_3058125_3070650 chr3L - chr3L_3057944_3058065 chr3L_3057943_3057944;chr3L_3058065_3058066 chr3L_3057829_3057943;chr3L_3058066_3058124 6.25 1.67 7.69 15.38 5.88 14.63 6.15 14.29 12.20 3.85 4.65 6.67 9.43 7.41 4.08 15.00 7.41 8.33 10.00 6.52 5.13 13.41 8.11 3.80 6.15 0.00 5.48 6.45 7.55 4.29 14.29 9.30 4.44 8.62 9.52 2.50 2.86 8.20 4.27 10.31 5.00 6.94 12.50 10.26 5.00 6.25 4.23 9.52 12.00 5.80 4.48 0.00 0.00 0.00 5.26 1.92 3.45 4.17 K intron_retention Anxb11,I_chrX_16314152_16315813 chrX - chrX_16311929_16311988 chrX_16311928_16311929;chrX_16311988_16311989 chrX_16311206_16311928;chrX_16311989_16312005 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31216 chr3R + chr3R_15523169_15523247 chr3R_15523168_15523169;chr3R_15523247_15523248 chr3R_15523034_15523168;chr3R_15523248_15523688 2.68 4.00 3.39 3.33 0.00 4.23 0.00 4.59 1.94 0.00 0.00 2.13 5.00 0.00 2.80 0.00 0.00 5.97 5.48 3.19 0.00 15.07 3.28 2.21 7.46 5.08 10.00 6.85 8.33 0.00 1.80 0.00 4.23 1.83 3.45 5.80 3.92 2.68 3.36 1.63 3.12 2.89 2.70 4.03 0.00 1.89 0.00 4.17 6.21 1.67 1.79 0.00 0.00 2.53 2.11 2.11 0.00 0.00 K cassette CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261460_263795;chr4_261460_263891 chr4_261460_263113;chr4_263306_263891,chr4_263306_263795 chr4_263114_263305 chr4_261360_261459;chr4_263892_263991 96.35 93.33 93.33 100.00 90.00 92.31 100.00 95.24 97.44 NA 88.89 92.59 55.56 100.00 94.74 96.88 92.86 94.12 91.67 96.15 90.91 100.00 90.91 92.86 100.00 81.82 93.33 NA 80.00 100.00 95.24 NA NA 97.30 90.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 87.50 NA 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 83.33 96.55 88.89 100.00 100.00 K alternative_acceptor CG5044,I_chr3R_11188256_11188309 chr3R + chr3R_11183043_11183114 chr3R_11183043_11183111 chr3R_11182999_11183042;chr3R_11183115_11183180 52.54 52.17 52.54 60.53 54.35 56.25 54.41 53.06 58.04 58.82 54.90 56.38 51.02 48.94 44.44 55.22 55.00 46.34 59.26 50.00 47.62 44.83 50.88 48.78 52.38 53.70 51.16 46.88 42.11 48.15 55.36 50.00 60.87 46.15 60.00 45.24 54.55 52.94 59.26 56.45 37.50 49.04 50.00 55.07 55.56 51.11 51.28 58.62 54.84 52.94 45.24 40.00 41.18 60.00 54.55 54.05 46.88 47.06 K alternative_donor CG2258,I_chrX_7993647_7995101,I_chrX_7993647_7995119,I_chrX_7993650_7995126,I_chrX_7994188_7995101 chrX - chrX_7993650_7995978;chrX_7993650_7995119 chrX_7993650_7995101 chrX_7993643_7993649;chrX_7995979_7996028 44.44 60.00 60.00 66.67 40.00 50.00 40.00 54.55 77.78 NA 66.67 53.85 40.00 40.00 50.00 44.44 40.00 40.00 42.86 53.33 40.00 33.33 14.29 50.00 33.33 60.00 57.14 33.33 66.67 60.00 37.50 NA NA 54.55 50.00 75.00 40.00 33.33 44.44 40.00 40.00 77.78 40.00 100.00 NA 37.50 40.00 37.50 53.33 42.86 44.44 33.33 33.33 33.33 55.56 37.50 60.00 57.14 K alternative_donor RpL3,I_chr3R_7047694_7047896,I_chr3R_7047774_7047896,E_chr3R_7047964_7050565,I_chr3R_7049970_7050189 chr3R + chr3R_7047774_7047896;chr3R_7047694_7047896 chr3R_7047655_7047896 chr3R_7047897_7047963;chr3R_7047619_7047654 100.00 100.00 100.00 99.96 100.00 100.00 99.96 99.98 99.97 100.00 100.00 99.97 99.90 100.00 99.92 100.00 99.96 100.00 100.00 99.98 100.00 100.00 98.28 100.00 100.00 100.00 100.00 100.00 99.51 99.47 99.88 100.00 100.00 99.98 100.00 100.00 99.72 100.00 100.00 100.00 100.00 99.96 99.96 100.00 100.00 100.00 100.00 100.00 99.96 100.00 100.00 100.00 100.00 100.00 99.97 100.00 100.00 99.87 K jcn_only_AD CG3508 chr3R + chr3R_10485305_10485465 chr3R_10485338_10485465 chr3R_10485466_10486020;chr3R_10485170_10485304 15.48 NA NA NA NA NA NA NA 25.00 NA NA 14.29 NA NA NA 12.50 NA NA NA 12.12 NA NA 10.34 9.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA 33.33 NA 27.27 NA NA NA NA 18.18 NA NA K jcn_only_AA Rbf chrX - chrX_691717_691794 chrX_691726_691794 chrX_691795_692175;chrX_691252_691716 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 98.46 100.00 100.00 97.73 NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 98.81 100.00 100.00 96.67 97.44 96.88 100.00 100.00 100.00 97.06 100.00 97.56 100.00 100.00 96.77 98.36 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 NA 98.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.63 97.44 K alternative_donor hppy,I_chr2R_15066378_15066915,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15066304_15067003;chr2R_15066243_15067003;chr2R_15066358_15067003 chr2R_15066378_15067003 chr2R_15067004_15067015;chr2R_15066237_15066242 100.00 83.33 100.00 90.91 75.00 100.00 88.24 83.33 95.24 80.00 80.00 92.31 85.71 90.91 100.00 100.00 100.00 100.00 88.89 100.00 80.00 100.00 100.00 83.33 100.00 100.00 100.00 83.33 90.91 100.00 85.71 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 88.89 100.00 NA 75.00 80.00 100.00 100.00 K intron_retention Cap-H2 chr3R + chr3R_6587748_6587968 chr3R_6587747_6587748;chr3R_6587968_6587969 chr3R_6587566_6587747;chr3R_6587969_6588171 0.00 0.00 0.00 17.39 0.00 0.00 10.53 0.00 1.85 0.00 0.00 8.33 0.00 0.00 0.00 2.50 0.00 0.00 0.00 3.23 0.00 4.35 0.00 0.00 NA 7.14 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 6.45 2.63 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 4.35 NA NA 4.44 K intron_retention X11L,I_chrX_17497609_17497728,RE_chrX_17497873_17498103 chrX + chrX_17497505_17497728 chrX_17497504_17497505;chrX_17497728_17497729 chrX_17497189_17497504;chrX_17497729_17497739 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 2.27 1.56 0.00 0.00 0.00 0.00 0.00 0.00 7.27 0.00 11.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.62 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 NA K cassette CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21275807_21281131;chr2L_21275807_21279883 chr2L_21275807_21277196;chr2L_21278430_21281131,chr2L_21278430_21279883 chr2L_21277197_21278429 chr2L_21275724_21275806;chr2L_21281132_21281337 12.77 11.32 6.25 7.50 9.52 11.54 12.20 11.76 12.86 28.57 3.57 9.80 6.90 12.12 6.25 5.00 18.18 9.68 10.81 6.49 3.85 11.63 18.00 18.92 16.13 4.76 12.77 16.13 14.81 13.64 13.33 5.88 14.89 11.11 15.15 33.33 28.12 26.09 18.18 8.53 10.00 8.33 15.38 11.76 14.29 15.38 13.16 12.77 12.07 10.91 14.81 16.67 14.29 18.52 13.16 15.38 16.67 9.26 K alternative_acceptor how chr3R + chr3R_17897152_17897460 chr3R_17897152_17897418 chr3R_17897055_17897151;chr3R_17897461_17897763 11.11 6.25 10.34 22.22 6.45 6.25 39.29 10.81 14.04 16.22 5.26 12.12 9.09 23.08 16.67 15.38 18.52 13.64 17.39 12.07 10.53 14.29 10.61 7.27 18.18 50.00 25.00 8.33 14.29 12.50 16.13 15.38 25.00 15.15 13.51 35.71 6.49 4.65 10.87 10.34 30.43 10.00 13.04 4.76 26.67 11.11 8.82 8.57 8.33 10.26 5.26 4.55 5.56 4.76 3.12 3.33 15.00 9.09 K alternative_acceptor Ard1,noncoding_11800 chr3L + chr3L_9965498_9965994;chr3L_9965498_9965980 chr3L_9965498_9966021 chr3L_9965419_9965497;chr3L_9966022_9966054 0.00 NA NA 25.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA 16.67 NA NA NA NA NA NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 16.67 NA NA 16.67 9.09 NA 14.29 0.00 NA NA NA NA NA NA NA NA 7.14 K alternative_donor xmas-1,xmas-2 chrX - chrX_17048134_17049045 chrX_17048134_17048464 chrX_17048122_17048133;chrX_17049046_17051545 75.86 76.47 85.71 88.46 77.78 73.33 84.62 90.91 80.00 14.29 90.91 78.79 76.47 93.33 82.35 75.86 75.00 91.67 85.00 96.15 53.33 58.82 66.67 68.42 46.15 92.86 72.22 90.91 56.25 61.11 70.59 76.47 55.17 82.35 50.00 42.86 46.67 53.85 46.67 75.86 92.31 78.12 100.00 71.43 76.47 73.68 75.00 66.67 93.55 71.43 72.73 90.00 69.23 83.33 94.12 55.00 68.18 71.43 K jcn_only_AD Rrp42,RI_chr2R_11902769_11902844 chr2R + chr2R_11902769_11902844 chr2R_11902794_11902844 chr2R_11902845_11902944;chr2R_11902669_11902768 100.00 NA NA 100.00 NA 100.00 95.65 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 100.00 100.00 100.00 97.14 95.83 NA 100.00 100.00 NA NA NA 95.65 NA 100.00 96.00 NA 100.00 100.00 96.30 100.00 96.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 92.00 100.00 100.00 97.83 N cassette CG17724,Kdm4B,seq chr2R - chr2R_9066519_9072281;chr2R_9067616_9072281 chr2R_9066519_9068494,chr2R_9067616_9068494;chr2R_9070740_9072281 chr2R_9068495_9070739 chr2R_9063672_9066518;chr2R_9072282_9072680 60.00 52.27 48.48 68.52 62.96 58.33 41.67 45.61 59.74 94.12 55.00 61.18 52.94 60.00 52.38 59.46 47.83 54.55 44.74 48.19 60.71 97.14 74.14 64.29 66.67 48.15 58.54 96.15 65.22 73.81 48.48 100.00 62.69 50.82 82.61 66.67 79.52 90.32 77.78 67.24 47.83 56.58 53.85 58.97 58.62 58.62 71.43 66.00 51.47 53.33 65.96 85.00 70.00 64.00 58.82 93.75 50.00 65.71 K jcn_only_AD crol,I_chr2L_11799403_11802904 chr2L - chr2L_11800323_11802904;chr2L_11800323_11802286;chr2L_11800323_11802343 chr2L_11800323_11802370 chr2L_11800155_11800322;chr2L_11802905_11803004 42.53 41.76 48.58 61.27 52.69 46.69 50.28 39.62 47.16 22.28 45.57 44.12 42.53 50.68 48.87 40.67 41.23 56.74 48.28 44.57 39.75 35.80 40.81 42.41 42.64 48.98 43.17 43.64 30.98 39.15 47.89 35.09 31.30 42.54 46.73 43.17 42.79 45.53 42.55 31.71 27.16 46.80 41.75 41.28 40.15 31.91 42.50 22.56 45.06 38.78 36.81 42.59 35.76 39.31 50.33 41.95 40.11 29.63 K jcn_only_AA CG11448,I_chrX_1288748_1289115,RI_chrX_1289405_1289590 chrX + chrX_1288748_1289130 chrX_1288748_1289115 chrX_1288648_1288747;chrX_1289131_1289215 0.00 0.00 0.00 NA NA NA 4.76 4.76 2.86 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 4.26 0.00 NA NA 3.03 4.76 2.44 4.76 NA 4.55 0.00 0.00 0.00 4.76 1.85 0.00 0.00 0.00 NA 0.00 NA 3.57 0.00 0.00 0.00 0.00 0.00 0.00 3.33 NA 0.00 NA 0.00 0.00 0.00 1.82 K alternative_acceptor kuz,E_chr2L_13550294_13551106,I_chr2L_13550421_13550984,CE_chr2L_13558833_13594255,I_chr2L_13636762_13637287 chr2L + chr2L_13550421_13551141 chr2L_13550421_13550984 chr2L_13550321_13550420;chr2L_13551142_13551156 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Karl,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11682370_11682803 chrX_11682369_11682370;chrX_11682803_11682804 chrX_11682363_11682369;chrX_11682804_11683136 68.18 NA NA 46.15 NA NA 38.89 66.67 92.31 NA NA 70.00 NA 58.33 NA 68.18 NA NA 88.89 NA NA NA NA NA NA NA NA NA NA NA 70.00 NA NA 71.43 69.23 NA NA NA NA NA NA 45.00 NA NA NA NA NA NA 70.00 NA 52.94 NA NA NA NA NA 66.67 NA K jcn_only_AA l(2)k01209,I_chr2R_13308079_13310771,RI_chr2R_13310877_13311160 chr2R + chr2R_13308079_13308681;chr2R_13308079_13308147;chr2R_13308079_13311160 chr2R_13308079_13308952 chr2R_13307979_13308078 2.96 0.00 2.33 7.41 NA 4.00 7.25 1.56 1.10 3.33 2.70 2.30 3.85 0.00 0.00 4.29 0.00 2.33 5.41 3.85 0.00 0.00 2.04 2.99 0.00 20.00 6.17 0.00 3.64 2.99 9.30 0.00 2.70 3.08 0.00 10.29 0.00 2.78 3.57 0.00 3.66 5.26 10.00 2.94 1.64 1.52 3.64 2.00 4.00 0.00 3.10 5.13 7.84 0.00 6.38 1.69 7.81 4.69 K intron_retention CG33936,CG33937,RI_chr3R_5183458_5183705 chr3R + chr3R_5182048_5182145 chr3R_5182047_5182048;chr3R_5182145_5182146 chr3R_5181748_5182047;chr3R_5182146_5182392 100.00 NA NA 88.89 NA NA 100.00 NA 100.00 NA NA 100.00 NA 100.00 100.00 NA NA 100.00 NA 93.33 NA 100.00 NA NA 100.00 NA 100.00 98.98 NA NA NA NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention ZC3H3 chr3L - chr3L_8501979_8502076 chr3L_8501978_8501979;chr3L_8502076_8502077 chr3L_8501433_8501978;chr3L_8502077_8502899 0.00 0.00 NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 6.67 NA 0.00 NA K intron_retention SNF4Agamma,I_chr3R_16982134_16982890,RI_chr3R_17034385_17036001 chr3R + chr3R_17033390_17036510 chr3R_17033389_17033390;chr3R_17036510_17036511 chr3R_17033341_17033389;chr3R_17036511_17036801 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG32685,CREI_chrX_9967445_9972518 chrX - chrX_9969104_9969176 chrX_9969107_9969176 chrX_9969177_9969660;chrX_9969016_9969103 12.88 19.44 15.25 20.00 25.00 17.02 11.76 20.00 14.14 NA 19.44 12.50 18.87 12.50 8.00 15.66 7.84 7.69 8.96 8.49 12.77 4.44 22.45 8.51 5.41 12.86 12.77 24.14 13.33 20.00 10.94 18.00 17.95 22.09 12.50 12.07 14.29 7.14 11.11 10.78 9.59 10.17 12.20 20.00 11.96 14.17 3.12 20.35 12.90 14.93 12.73 19.44 17.07 10.87 20.69 8.20 17.74 13.39 N jcn_only_AD RpS27A chr2L + chr2L_10410052_10410240;chr2L_10410157_10410240 chr2L_10410169_10410240 chr2L_10410241_10410467;chr2L_10409711_10410051 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.08 0.00 0.00 0.07 0.08 0.00 0.12 0.17 0.00 N alternative_donor CG9940 chrX - chrX_13601748_13612161 chrX_13601748_13603401 chrX_13601629_13601747;chrX_13612162_13612298 14.29 16.67 8.57 6.25 16.67 8.33 25.81 7.81 14.47 14.29 13.04 20.83 16.67 11.76 14.29 15.00 22.22 20.00 15.62 45.65 10.71 25.00 10.87 13.89 12.00 16.67 16.67 14.29 22.73 6.15 17.65 8.33 4.27 17.39 11.11 11.11 28.00 14.29 13.04 9.52 5.88 18.00 22.22 10.42 16.67 10.00 12.00 6.19 12.50 35.71 11.36 15.00 15.79 12.50 13.51 16.67 22.22 5.63 K jcn_only_AD Syx5,fzy chr2L + chr2L_16306959_16307482 chr2L_16307390_16307482 chr2L_16307483_16307526;chr2L_16306941_16306958 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 K cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2390808;chrX_2387249_2389980;chrX_2387249_2392054;chrX_2387249_2395659;chrX_2388671_2392054;chrX_2388671_2395659 chrX_2387249_2389073,chrX_2388671_2389073;chrX_2389272_2389980,chrX_2389272_2390808,chrX_2389272_2392054,chrX_2389272_2395659 chrX_2389074_2389271 chrX_2387149_2387248;chrX_2395660_2395759 3.70 6.78 5.41 0.00 2.08 0.00 1.59 2.05 3.74 10.71 0.00 13.76 1.72 3.28 2.04 5.63 4.11 2.70 2.30 4.46 5.41 10.20 3.09 2.17 5.26 4.69 1.41 6.67 2.56 1.61 4.84 5.26 3.74 2.16 2.08 7.89 4.85 4.65 3.49 2.88 6.25 5.37 3.08 9.30 13.33 5.71 NA 4.32 2.67 0.00 1.92 2.63 3.64 NA 3.70 5.56 0.00 8.93 K intron_retention CG42503,Mocs2 chr3R - chr3R_20952596_20952656 chr3R_20952595_20952596;chr3R_20952656_20952657 chr3R_20952529_20952595;chr3R_20952657_20953023 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N multi_cassette Hr78,I_chr3L_21490089_21490390,CG33214 chr3L - chr3L_21488969_21490390 chr3L_21488969_21489526;chr3L_21489842_21489919;chr3L_21490023_21490390 chr3L_21489527_21489841;chr3L_21489920_21490022 chr3L_21488699_21488968;chr3L_21490391_21490490 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 72.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Nipped-B,I_chr2R_580301_580515,I_chr2R_580453_580515,I_chr2R_580989_582555,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_580301_580367 chr2R_580300_580301;chr2R_580367_580368 chr2R_580236_580300;chr2R_580368_580452 88.57 92.50 92.00 97.59 81.82 85.29 74.81 86.67 89.84 82.76 90.32 93.81 77.19 89.55 88.37 93.91 95.24 90.70 95.65 90.22 91.67 79.41 91.53 82.46 81.82 80.56 75.76 78.95 92.00 91.49 84.54 95.77 93.33 90.24 86.54 100.00 85.19 96.15 86.21 86.96 97.14 86.60 88.00 83.33 82.50 86.59 91.30 94.85 85.12 81.63 90.77 87.50 94.74 88.57 85.94 93.88 82.00 91.67 K alternative_donor CG42257,I_chr2R_17950432_17950483,F_chr2R_17955634_17955931 chr2R + chr2R_17948766_17955931 chr2R_17949087_17955931 chr2R_17955932_17956031;chr2R_17948458_17948765 100.00 NA NA 100.00 NA NA 100.00 85.71 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 NA 100.00 80.00 NA 100.00 83.33 NA 83.33 NA 100.00 NA 100.00 NA 85.71 NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA 100.00 100.00 K alternative_acceptor CG7546 chr3L + chr3L_7505017_7505072 chr3L_7505017_7505069 chr3L_7504805_7505016;chr3L_7505073_7505828 12.82 14.29 12.99 13.08 8.47 11.11 14.47 10.78 12.00 11.43 11.32 14.41 16.28 19.15 9.52 12.07 12.68 11.86 15.87 14.40 13.11 10.53 12.36 12.31 13.73 12.82 11.48 13.51 14.58 12.33 13.92 14.71 12.36 16.48 16.67 21.57 14.29 13.79 12.50 8.80 17.65 15.04 8.77 8.77 16.13 10.87 9.62 15.71 17.12 10.81 14.75 11.11 9.52 11.11 20.24 10.53 10.71 16.28 K intron_retention CG16965,CG34163,escl chr2L + chr2L_11988330_11988383 chr2L_11988329_11988330;chr2L_11988383_11988384 chr2L_11988313_11988329;chr2L_11988384_11988888 0.00 NA 0.00 5.26 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention RpS8,I_chr3R_25688919_25689137,snoRNA:Me28S-A2564,F_chr3R_25696884_25696960 chr3R + chr3R_25688919_25689136 chr3R_25688918_25688919;chr3R_25689136_25689137 chr3R_25688819_25688918;chr3R_25689137_25689702 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.02 0.00 0.01 0.00 0.04 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.02 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 0.01 0.00 0.03 0.01 0.01 0.01 0.03 0.01 K alternative_donor CG17490 chr2L + chr2L_22431120_22432684;chr2L_22431088_22432684;chr2L_22431020_22432684 chr2L_22431301_22432684 chr2L_22432685_22433056;chr2L_22431014_22431019 87.04 80.95 88.89 78.57 65.00 86.96 72.34 72.92 87.72 90.00 90.48 85.11 80.00 74.07 74.19 77.78 80.00 84.00 77.42 87.76 91.30 86.96 88.24 94.74 90.91 87.50 88.24 90.00 93.33 94.12 90.20 83.33 100.00 87.04 85.71 80.00 93.33 100.00 86.67 89.19 85.71 77.55 74.07 90.62 91.67 86.96 90.48 88.89 84.75 68.18 84.62 90.00 68.42 71.43 89.47 94.12 88.00 90.00 K alternative_acceptor gw,I_chr4_679135_681671 chr4 - chr4_673205_673271 chr4_673211_673271 chr4_673272_673459;chr4_672931_673204 92.11 87.50 89.66 89.61 86.21 100.00 94.59 92.41 87.74 88.24 95.45 93.67 92.11 89.29 96.67 92.73 93.02 92.86 100.00 91.95 86.36 95.45 87.88 91.30 85.19 84.62 97.06 95.45 95.00 95.24 90.70 92.31 94.12 90.54 93.33 85.71 97.22 87.88 93.55 86.54 94.12 90.32 96.67 81.63 95.65 87.18 88.57 91.18 91.46 97.30 95.45 84.85 93.10 82.76 92.45 90.91 92.00 92.86 K intron_retention CG10083 chr3L - chr3L_13477889_13477950 chr3L_13477888_13477889;chr3L_13477950_13477951 chr3L_13477410_13477888;chr3L_13477951_13478127 0.00 0.00 0.00 0.00 3.92 1.72 0.00 2.70 1.56 3.17 0.00 2.15 0.00 0.00 1.72 3.92 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 1.22 0.00 1.28 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 K alternative_acceptor CG11337,I_chr3R_27230306_27230374,RI_chr3R_27230320_27230374 chr3R - chr3R_27230306_27230374;chr3R_27230327_27230374 chr3R_27230320_27230374 chr3R_27230375_27230410;chr3R_27230220_27230305 30.00 NA NA 33.33 NA NA 33.33 26.67 23.81 NA NA 20.00 NA NA NA 26.67 NA NA 33.33 18.18 NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA 40.00 NA NA 37.50 NA 33.33 NA NA NA NA NA NA 36.36 NA NA NA NA NA 9.09 NA NA NA K jcn_only_AD RpL14 chr3L + chr3L_8594138_8594413 chr3L_8594238_8594413 chr3L_8594414_8594515;chr3L_8594108_8594137 3.81 3.49 3.07 1.03 2.31 1.50 3.70 3.14 2.34 3.81 2.11 5.53 0.98 0.00 0.88 2.33 1.21 1.92 1.65 4.82 1.32 6.17 20.39 8.81 8.33 1.61 32.79 15.07 7.75 4.31 20.49 4.29 1.28 1.23 4.35 11.11 10.14 16.22 11.50 2.29 6.67 1.01 0.77 8.10 4.22 9.09 14.41 3.09 3.04 13.11 22.22 13.64 3.30 33.33 1.63 17.83 7.07 3.05 K intron_retention CG12703 chrX + chrX_19644924_19645380 chrX_19644923_19644924;chrX_19645380_19645381 chrX_19644833_19644923;chrX_19645381_19645579 87.14 87.10 90.00 77.55 96.15 77.78 94.87 70.18 82.50 85.71 90.91 88.71 96.43 86.21 91.43 100.00 83.33 74.29 81.82 76.60 93.10 96.61 80.00 79.41 95.00 95.45 72.22 95.00 100.00 82.05 95.83 95.83 98.04 79.55 87.10 95.24 79.55 92.59 70.83 93.33 95.24 86.76 85.19 93.33 83.33 90.62 75.86 98.31 87.14 100.00 78.12 96.55 96.43 84.62 83.33 81.82 78.79 98.04 K jcn_only_AD Neu3,I_chr3R_10493378_10493462,I_chr3R_10493378_10494080 chr3R - chr3R_10493378_10494587 chr3R_10493378_10493462 chr3R_10493278_10493377;chr3R_10494588_10494717 42.84 NA NA NA NA NA NA NA 45.45 65.22 NA NA NA NA NA NA NA NA NA NA NA 57.78 21.43 NA NA NA NA NA NA NA NA NA NA NA NA NA 52.38 NA NA NA NA 35.00 NA 14.29 NA 41.67 NA 44.00 NA NA NA NA NA NA NA NA 40.91 NA N alternative_donor myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_715043_716322;chr4_715043_716708;chr4_715043_716613;chr4_715043_715839 chr4_715043_716482 chr4_714007_715042;chr4_716709_716712 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3R_223384_223429,CG9853 chr3R - chr3R_225108_225167 chr3R_225107_225108;chr3R_225167_225168 chr3R_224280_225107;chr3R_225168_225402 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 1.23 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 1.64 0.00 1.11 1.94 0.00 1.15 0.00 0.00 0.00 2.99 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8184,I_chrX_15620707_15620769 chrX + chrX_15617113_15617265 chrX_15617112_15617113;chrX_15617265_15617266 chrX_15615597_15617112;chrX_15617266_15618411 97.67 100.00 90.91 98.59 90.32 97.62 98.11 100.00 98.82 97.67 96.55 100.00 100.00 95.24 97.67 97.83 96.77 96.88 100.00 99.15 97.14 97.22 97.33 96.67 97.87 98.08 96.23 96.00 96.92 98.82 97.73 97.44 96.08 98.65 98.39 98.51 98.75 100.00 98.70 94.90 97.62 95.83 96.97 95.31 100.00 96.43 96.30 99.30 95.83 100.00 98.25 96.55 92.00 100.00 97.92 96.00 100.00 96.05 K intron_retention CG7956 chr3R + chr3R_17352625_17352877 chr3R_17352624_17352625;chr3R_17352877_17352878 chr3R_17351551_17352624;chr3R_17352878_17352983 100.00 100.00 100.00 100.00 100.00 100.00 98.82 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.81 100.00 100.00 100.00 95.00 97.96 100.00 100.00 96.97 98.57 100.00 97.62 97.18 100.00 100.00 100.00 96.43 100.00 97.87 97.83 98.46 100.00 97.22 96.15 98.82 100.00 97.92 100.00 100.00 100.00 96.77 100.00 100.00 100.00 97.50 100.00 100.00 K intron_retention CG12121 chrX - chrX_9125972_9126035 chrX_9125971_9125972;chrX_9126035_9126036 chrX_9125861_9125971;chrX_9126036_9126384 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Sec16,I_chrX_12501913_12502010,I_chrX_12502899_12502973 chrX + chrX_12502899_12502973;chrX_12502899_12502967 chrX_12502899_12502970 chrX_12502799_12502898;chrX_12502974_12503073 10.81 5.88 16.00 13.33 8.33 16.67 12.50 15.62 9.38 14.29 20.00 8.82 5.56 5.88 9.52 10.34 8.33 13.33 17.39 8.11 0.00 13.04 14.29 6.67 6.25 4.55 18.52 6.25 10.00 3.85 10.34 14.29 14.29 14.29 22.22 5.56 7.14 25.00 13.33 13.46 10.81 9.52 7.69 17.24 6.67 10.42 10.00 10.45 12.82 17.39 11.11 12.50 11.11 0.00 17.24 18.18 14.29 9.80 K jcn_only_AD CG1572,RI_chrX_11450380_11450442,I_chrX_11450380_11452520 chrX - chrX_11450380_11450442;chrX_11450380_11452571 chrX_11450380_11452565 chrX_11450280_11450379;chrX_11452572_11452620 3.99 3.66 4.45 4.12 3.03 3.36 2.55 3.99 2.99 5.02 2.39 4.16 2.66 3.33 7.72 3.46 2.52 2.91 3.65 3.85 3.37 4.00 5.26 3.48 3.80 2.96 5.25 6.16 5.18 5.75 3.23 4.97 4.68 3.16 3.69 3.98 3.50 3.55 2.51 5.67 4.62 3.28 2.73 4.40 6.42 4.31 4.79 4.61 4.32 4.31 4.54 3.50 5.84 5.79 3.52 4.30 4.36 4.60 K jcn_only_AD Lnk,RI_chr3R_21714780_21715376 chr3R + chr3R_21717757_21718170 chr3R_21717790_21718170 chr3R_21718171_21718878;chr3R_21716440_21717756 97.65 100.00 95.77 96.25 97.22 97.78 100.00 97.18 96.40 96.10 100.00 99.26 98.36 97.06 94.74 100.00 97.67 97.96 98.57 98.78 100.00 96.52 98.10 96.04 96.30 98.04 97.94 90.91 98.47 98.06 99.16 96.88 97.50 98.26 98.96 95.88 98.04 98.55 96.06 82.94 98.09 97.26 100.00 96.34 93.50 98.11 96.67 97.37 98.40 97.41 98.29 97.65 97.53 97.10 100.00 95.76 97.41 95.06 K intron_retention CG5594,CG2812 chr2R + chr2R_19810380_19810444 chr2R_19810379_19810380;chr2R_19810444_19810445 chr2R_19810164_19810379;chr2R_19810445_19810552 0.60 0.00 0.00 0.00 3.49 1.30 1.63 0.59 1.57 0.00 4.82 0.00 1.77 0.00 2.26 0.97 2.15 0.00 1.64 0.94 1.98 5.19 0.00 0.55 0.00 5.31 8.82 3.64 13.16 0.00 4.48 2.25 0.00 1.04 2.41 3.92 0.00 0.00 1.31 0.00 0.00 1.79 0.00 0.00 0.00 0.71 0.00 2.04 1.97 0.00 0.00 0.00 0.00 0.00 0.90 0.60 0.00 0.00 K intron_retention CG14232,meso18E chrX - chrX_19596707_19596765 chrX_19596706_19596707;chrX_19596765_19596766 chrX_19596059_19596706;chrX_19596766_19597230 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 2.90 0.00 1.31 0.00 0.00 1.67 0.00 0.00 0.00 1.49 0.00 0.00 0.72 0.36 0.00 1.18 1.89 0.00 1.64 0.00 0.00 1.18 0.79 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette Nedd4,I_chr3L_17534127_17534409,I_chr3L_17534504_17535990,I_chr3L_17535485_17536604,I_chr3L_17536186_17536604,I_chr3L_17536813_17536863 chr3L + chr3L_17534504_17536604 chr3L_17534504_17535299;chr3L_17535485_17535650;chr3L_17535913_17535990;chr3L_17536063_17536604 chr3L_17535300_17535484;chr3L_17535651_17535912;chr3L_17535991_17536062 chr3L_17534419_17534503;chr3L_17536605_17536704 2.17 2.33 1.87 0.98 0.00 2.27 3.97 0.61 2.07 3.88 2.67 4.72 0.00 0.00 0.00 4.05 2.78 3.33 0.00 6.14 1.23 5.88 1.56 2.44 1.12 0.00 2.22 3.85 2.21 2.40 2.75 2.60 1.90 1.27 1.83 0.00 2.17 1.75 1.82 3.27 2.44 1.28 2.94 3.20 3.60 1.56 2.33 4.02 1.48 3.23 2.05 2.04 0.00 1.47 0.00 1.52 3.12 3.45 K intron_retention CG1344 chr2R + chr2R_1541422_1541473 chr2R_1541421_1541422;chr2R_1541473_1541474 chr2R_1541209_1541421;chr2R_1541474_1543890 7.36 12.12 10.81 37.04 10.71 3.33 8.11 11.63 6.25 13.04 3.33 5.88 2.13 2.70 5.00 7.02 8.89 5.00 8.33 11.84 0.00 2.99 13.33 10.00 15.38 11.11 30.56 24.00 18.42 0.00 0.00 6.67 4.83 6.15 14.29 24.00 0.00 0.00 6.90 6.49 12.20 5.88 9.52 4.44 10.81 15.15 6.67 17.57 6.02 3.45 18.18 13.79 0.00 NA 5.26 15.62 0.00 7.69 K alternative_donor CaMKI,I_chr4_466377_467256,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,RI_chr4_467374_467424,RI_chr4_467482_467543,I_chr4_467862_471815,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_466592_467726;chr4_466275_467726;chr4_466377_467726;chr4_467662_467726;chr4_466798_467726 chr4_467273_467726 chr4_467727_467826;chr4_466269_466274 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 K intron_retention Rbp1,Mcm5 chr3R + chr3R_6610646_6611879 chr3R_6610645_6610646;chr3R_6611879_6611880 chr3R_6610279_6610645;chr3R_6611880_6612229 7.30 5.71 6.90 20.37 NA 9.68 13.51 20.83 12.41 0.00 13.79 10.95 28.21 14.58 13.79 16.28 11.76 6.25 13.89 8.78 21.21 2.63 6.85 6.88 5.68 11.36 8.05 8.77 5.13 6.35 16.67 5.97 2.47 10.67 4.76 7.89 3.68 5.30 2.40 6.98 2.04 7.14 13.64 12.50 4.94 4.88 4.50 5.71 10.00 7.46 9.62 5.71 5.93 4.03 10.53 8.00 4.08 5.38 K intron_retention RpS11,I_chr2R_8087545_8087625,I_chr2R_8087545_8087698,I_chr2R_8087747_8088193 chr2R - chr2R_8087545_8087625 chr2R_8087544_8087545;chr2R_8087625_8087626 chr2R_8087476_8087544;chr2R_8087626_8087689 98.36 96.69 99.06 99.00 97.84 99.09 97.42 98.44 98.36 97.94 99.27 98.10 98.85 98.70 98.80 97.85 99.17 96.67 95.15 99.26 99.03 99.28 98.33 97.10 96.08 98.32 99.22 97.54 98.25 99.65 81.62 98.21 99.42 99.48 98.05 98.46 98.68 94.64 97.30 95.48 98.92 99.24 98.88 98.23 99.24 98.39 97.29 99.70 97.04 97.20 97.52 98.96 98.09 98.84 98.32 95.83 99.14 98.64 K intron_retention rgr,I_chr2R_4488735_4489955 chr2R + chr2R_4488735_4489955 chr2R_4488734_4488735;chr2R_4489955_4489956 chr2R_4488635_4488734;chr2R_4489956_4490055 88.89 NA NA NA NA NA NA NA 86.67 NA NA 91.67 NA NA NA NA NA 88.89 NA 70.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 80.00 NA NA NA NA 88.89 NA 88.89 NA NA NA NA NA 87.50 94.12 NA NA NA NA NA NA NA NA NA K alternative_acceptor Sry-beta chr3R + chr3R_25865608_25865675 chr3R_25865608_25865660 chr3R_25865454_25865607;chr3R_25865676_25866753 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 NA 100.00 100.00 100.00 100.00 93.33 91.67 100.00 100.00 91.67 100.00 90.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA lwr,RI_chr2L_542347_542429 chr2L - chr2L_542380_542429;chr2L_542351_542429 chr2L_542347_542429 chr2L_542430_542529;chr2L_542247_542346 2.80 3.18 0.55 3.90 2.33 2.38 3.93 2.87 3.35 1.84 1.32 3.45 5.52 1.85 2.91 5.58 3.31 2.07 1.60 3.38 0.65 3.69 3.16 1.50 0.00 3.45 1.52 2.75 1.88 1.49 2.13 4.23 2.64 3.42 2.63 4.22 2.95 1.50 4.20 2.80 1.16 3.57 2.80 0.47 3.72 3.86 2.16 1.53 2.54 3.79 3.46 2.47 0.92 1.61 3.76 2.05 3.61 3.07 K jcn_only_AA CG4901 chr2L + chr2L_10211283_10211450 chr2L_10211283_10211397 chr2L_10211183_10211282;chr2L_10211451_10212081 100.00 NA 94.87 100.00 100.00 100.00 100.00 100.00 98.31 90.91 96.00 96.15 100.00 NA 100.00 100.00 NA 96.43 100.00 98.77 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 90.38 100.00 100.00 97.50 99.10 100.00 100.00 97.87 95.00 NA 100.00 96.30 97.87 100.00 NA 100.00 100.00 100.00 100.00 97.59 100.00 NA 100.00 NA 96.55 NA 100.00 NA 100.00 98.00 K intron_retention CG32549,I_chrX_18286289_18286367,RI_chrX_18301919_18303082 chrX - chrX_18286796_18286869 chrX_18286795_18286796;chrX_18286869_18286870 chrX_18286582_18286795;chrX_18286870_18286943 0.79 1.30 1.17 1.79 0.78 0.00 0.81 1.67 0.57 0.00 0.00 0.79 0.00 0.75 1.05 0.00 0.00 0.72 0.00 1.75 0.00 0.00 1.13 1.45 0.00 1.09 1.24 2.23 2.52 1.17 0.00 0.00 1.52 1.12 0.93 2.34 1.11 0.00 0.00 1.38 1.24 0.65 0.00 1.14 0.64 0.00 0.00 1.48 1.45 0.00 0.00 1.05 0.00 0.00 1.05 0.00 1.19 1.10 K intron_retention CG9641,I_chr2L_2976765_2976818,I_chr2L_2986815_2987511 chr2L - chr2L_2976555_2976818 chr2L_2976554_2976555;chr2L_2976818_2976819 chr2L_2975151_2976554;chr2L_2976819_2976918 63.64 65.00 64.00 81.82 52.00 53.33 80.00 64.71 51.79 93.75 38.89 69.44 55.56 52.17 54.84 57.14 52.63 57.14 48.15 63.27 52.94 57.14 85.29 64.52 92.86 73.33 67.86 72.34 75.76 63.64 50.00 57.14 79.31 54.29 73.33 86.67 62.07 72.73 70.00 62.86 64.29 56.60 60.87 65.71 45.45 63.64 64.00 60.87 65.12 73.91 72.73 53.33 69.57 71.43 56.25 50.00 60.87 57.14 K jcn_only_AD CG3631 chr3R + chr3R_10705801_10705885;chr3R_10705805_10705885 chr3R_10705766_10705885 chr3R_10705886_10706516;chr3R_10705554_10705765 52.50 NA NA NA NA NA 50.00 NA 50.00 NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 55.00 NA NA NA NA NA NA NA NA NA N alternative_donor Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11837971_11838112;chr2R_11837971_11838662 chr2R_11837971_11838672 chr2R_11837919_11837970;chr2R_11838673_11838762 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_donor MAPk-Ak2,RI_chrX_5655618_5656137,I_chrX_5656715_5657427,I_chrX_5656715_5657893,I_chrX_5656715_5657974 chrX - chrX_5656678_5658141 chrX_5656678_5658126 chrX_5656615_5656677;chrX_5658142_5658214 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 26.67 NA NA NA 100.00 NA NA 100.00 NA 100.00 NA NA 100.00 NA NA 30.77 50.00 NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 36.36 NA NA NA NA 100.00 NA NA NA K jcn_only_AD CG5594,CG2812 chr2R + chr2R_19797333_19799199 chr2R_19797357_19799199 chr2R_19799200_19799391;chr2R_19797201_19797332 95.93 96.22 96.21 95.48 97.66 95.52 97.64 95.45 96.26 84.00 92.23 95.19 95.65 96.58 99.38 97.57 98.00 96.61 94.81 96.68 94.81 95.30 94.51 95.88 99.10 95.83 95.58 100.00 96.25 94.09 95.76 99.01 89.84 97.71 94.87 94.74 99.29 95.19 96.08 90.97 100.00 98.19 94.26 96.51 91.60 94.41 95.93 97.39 97.95 98.31 95.74 98.62 95.83 97.98 98.50 94.95 98.43 93.25 K intron_retention CG8043,CG11755 chr3R + chr3R_4502770_4502834 chr3R_4502769_4502770;chr3R_4502834_4502835 chr3R_4502645_4502769;chr3R_4502835_4503955 3.85 NA 6.25 13.64 NA 0.00 9.09 0.00 0.00 NA NA 8.00 NA NA 0.00 0.00 NA 0.00 7.14 4.17 NA 0.00 NA 0.00 NA 6.25 NA NA NA NA 4.00 NA NA 0.00 NA 12.50 NA 0.00 0.00 4.76 NA 3.85 NA 0.00 NA NA NA NA 3.85 NA 13.33 NA NA 7.69 6.25 6.67 NA 0.00 K alternative_acceptor SWAP,RI_chrX_936466_936762,I_chrX_936466_936835,RI_chrX_936919_937245,RI_chrX_938935_938985,I_chrX_941459_982652 chrX + chrX_936466_936762;chrX_936466_936835 chrX_936466_936966 chrX_936366_936465;chrX_936967_937018 31.82 33.33 16.67 46.67 50.00 57.14 35.29 12.50 31.82 33.33 NA 28.57 28.57 28.57 25.00 NA 12.50 33.33 10.00 46.67 NA 25.00 28.57 33.33 NA NA 37.50 NA 44.44 20.00 45.45 25.00 42.86 7.14 33.33 NA 16.67 20.00 50.00 43.75 11.11 27.78 NA 0.00 40.00 33.33 40.00 33.33 22.22 36.36 38.46 25.00 0.00 25.00 10.00 57.14 40.00 22.22 K alternative_donor E(bx),I_chr3L_246324_246699 chr3L - chr3L_246324_246438;chr3L_246324_246408;chr3L_246324_246794;chr3L_246324_246382;chr3L_246324_246388;chr3L_246324_246427 chr3L_246324_246885 chr3L_246224_246323;chr3L_246886_246901 8.88 19.05 12.00 15.38 10.53 8.33 1.82 4.17 6.15 15.38 19.05 7.69 5.88 3.85 22.22 9.43 0.00 4.55 9.68 13.73 19.05 5.26 10.00 6.25 12.50 16.67 12.00 6.67 12.50 5.56 28.12 33.33 6.25 9.43 0.00 11.11 8.00 0.00 12.50 3.70 25.00 14.29 14.29 0.00 NA 0.00 0.00 13.64 16.95 0.00 17.24 0.00 25.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG13957,RI_chrX_16210869_16210936 chrX + chrX_16210869_16210936 chrX_16210873_16210936 chrX_16210937_16211036;chrX_16210769_16210868 97.09 100.00 NA NA NA NA 100.00 90.91 97.78 NA NA 97.37 NA 95.24 95.24 96.55 NA NA 96.15 100.00 NA 100.00 NA 96.43 NA NA 100.00 NA 100.00 NA 90.91 NA 100.00 100.00 NA NA 100.00 NA 95.24 96.97 96.30 93.10 NA 100.00 100.00 95.65 95.83 90.00 97.22 NA 96.67 NA 100.00 NA 100.00 90.91 96.77 100.00 K alternative_last_exon CG11241,noncoding_14208,l(3)04053 chr3L - chr3L_22726689_22728008 chr3L_22727837_22728008 chr3L_22726252_22726688 chr3L_22727412_22727836 chr3L_22728009_22728479 7.14 0.00 11.11 0.00 0.00 0.00 0.00 7.14 5.56 NA NA 8.33 0.00 0.00 0.00 15.00 0.00 0.00 0.00 6.25 0.00 NA 15.38 12.50 14.29 0.00 11.11 20.00 NA 25.00 0.00 20.00 25.00 7.14 14.29 0.00 NA 25.00 20.00 0.00 25.00 6.67 0.00 11.11 NA 20.00 9.09 16.67 5.88 9.09 12.50 0.00 16.67 10.00 0.00 9.09 11.11 0.00 K jcn_only_AD I_chr3R_2586481_2589554,Ama,I_chr3R_2589223_2589559,I_chr3R_2589239_2589559,I_chr3R_2589310_2589554,I_chr3R_2589312_2589554 chr3R + chr3R_2589223_2589554 chr3R_2589239_2589554 chr3R_2589555_2589654;chr3R_2589212_2589222 87.98 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA 87.50 NA NA NA NA 88.46 NA 90.91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention lolal,I_chr2R_14043671_14043736,I_chr2R_14043671_14043740,I_chr2R_14043671_14043901,RI_chr2R_14043671_14044082,I_chr2R_14043671_14044191,I_chr2R_14043671_14044461,I_chr2R_14043671_14045289,I_chr2R_14043671_14045344 chr2R - chr2R_14043671_14044251 chr2R_14043670_14043671;chr2R_14044251_14044252 chr2R_14043571_14043670;chr2R_14044252_14044258 88.89 NA NA 83.33 NA NA NA 90.91 100.00 NA NA 92.31 NA 88.89 88.89 71.43 NA 87.50 70.00 80.00 NA 100.00 100.00 NA NA NA NA NA 83.33 81.82 88.89 77.78 66.67 93.75 NA 87.50 NA NA NA 90.91 NA 93.75 NA 90.00 NA 80.00 NA 100.00 92.31 NA NA NA NA NA 87.50 NA NA NA K jcn_only_AA cni,RI_chr2L_16309575_16309999,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16309575_16309999 chr2L_16309931_16309999 chr2L_16310000_16310099;chr2L_16309475_16309574 100.00 100.00 100.00 99.53 100.00 100.00 99.18 100.00 100.00 100.00 98.55 99.68 100.00 100.00 100.00 99.19 100.00 100.00 100.00 99.75 100.00 100.00 98.74 99.12 99.23 95.38 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 98.32 97.89 100.00 100.00 99.57 100.00 99.25 99.70 100.00 100.00 100.00 100.00 99.56 100.00 99.70 99.10 100.00 99.33 100.00 100.00 99.50 99.55 100.00 100.00 K intron_retention Gs2 chrX + chrX_11318137_11318302 chrX_11318136_11318137;chrX_11318302_11318303 chrX_11318068_11318136;chrX_11318303_11318311 0.00 0.00 0.00 0.00 NA 0.00 15.15 7.69 0.00 4.00 NA 5.41 NA NA 0.00 0.00 NA NA 0.00 4.26 NA 0.00 0.00 0.00 0.00 0.00 0.00 8.51 5.71 0.00 0.00 0.00 6.25 0.00 0.00 5.88 0.00 NA 2.38 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.35 0.00 0.00 13.33 0.00 NA K jcn_only_AD CG1427,RI_chr3R_1427548_1427635 chr3R + chr3R_1427548_1427635 chr3R_1427585_1427635 chr3R_1427636_1427704;chr3R_1427482_1427547 97.92 100.00 NA NA NA NA NA 91.67 97.78 NA NA 100.00 92.00 NA 86.36 100.00 95.83 90.48 95.24 100.00 NA 95.24 97.67 97.92 100.00 95.00 100.00 NA 100.00 100.00 83.33 100.00 90.91 93.33 NA NA 100.00 100.00 97.67 100.00 NA 96.08 NA 100.00 97.30 95.24 100.00 88.89 96.08 100.00 97.30 96.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG3774,I_chrX_6114220_6114292 chrX + chrX_6114220_6114347 chrX_6114219_6114220;chrX_6114347_6114348 chrX_6114120_6114219;chrX_6114348_6114392 86.67 81.25 82.86 92.31 93.10 85.71 82.93 88.71 88.89 83.33 89.29 91.30 84.00 78.57 84.21 91.11 90.32 84.38 88.89 88.57 92.59 93.55 96.88 93.75 94.44 92.31 94.59 77.78 80.00 86.96 86.67 83.33 95.24 92.00 76.67 80.77 86.11 81.82 88.57 71.74 87.88 83.33 85.71 92.86 68.97 86.67 96.00 73.68 88.52 86.36 79.49 77.78 88.24 86.67 80.95 86.96 83.87 82.50 N jcn_only_AD mfrn,I_chr3R_23770737_23770817,I_chr3R_23771063_23771153,I_chr3R_23771063_23772599 chr3R - chr3R_23771063_23771137;chr3R_23771063_23771153 chr3R_23771063_23772915 chr3R_23770974_23771062;chr3R_23772916_23773724 98.39 97.56 97.44 96.88 98.28 98.44 98.45 95.18 99.43 97.96 98.82 98.39 96.61 98.28 100.00 100.00 100.00 98.33 96.10 98.19 100.00 89.73 97.33 98.53 96.67 96.67 96.52 99.13 98.82 99.12 94.84 96.51 100.00 96.33 93.42 98.04 100.00 98.13 99.40 98.26 100.00 99.30 98.15 99.22 100.00 99.22 97.00 98.83 96.80 97.32 96.95 100.00 100.00 100.00 100.00 98.90 100.00 100.00 K alternative_donor Npc1a chr2L - chr2L_10218890_10220868;chr2L_10218890_10220834;chr2L_10218890_10220692 chr2L_10218890_10220796 chr2L_10218779_10218889;chr2L_10220869_10220873 9.23 0.00 7.41 9.09 6.25 0.00 9.68 7.69 9.23 0.00 10.00 20.00 11.76 9.52 8.00 12.77 8.33 7.41 13.33 19.05 11.76 18.52 6.67 9.52 18.18 18.75 11.11 0.00 13.64 13.04 14.29 0.00 8.70 10.34 12.50 20.00 22.22 0.00 15.38 8.11 0.00 10.91 8.70 12.12 22.22 0.00 7.14 7.14 10.00 0.00 9.09 12.50 0.00 0.00 7.69 18.18 0.00 4.17 K intron_retention CG42640,l(2)k09913 chr2R + chr2R_18953499_18953559 chr2R_18953498_18953499;chr2R_18953559_18953560 chr2R_18953403_18953498;chr2R_18953560_18954297 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 1.19 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Dad,I_chr3R_12893363_12894192,I_chr3R_12898717_12898778 chr3R + chr3R_12880085_12880773 chr3R_12880112_12880773 chr3R_12880774_12880896;chr3R_12879745_12880084 25.00 NA NA NA NA NA NA 25.00 22.22 NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 27.78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA K alternative_donor CG8839,I_chr2R_8229288_8229488,I_chr2R_8229288_8231538 chr2R - chr2R_8229288_8231968;chr2R_8229288_8232025;chr2R_8229288_8231966 chr2R_8229288_8231964 chr2R_8229188_8229287;chr2R_8232026_8232112 6.41 5.45 5.13 5.75 5.56 4.71 7.69 4.85 6.91 15.56 4.72 4.37 7.00 4.90 5.33 6.37 5.56 6.61 5.16 6.72 5.38 5.75 6.90 4.35 6.78 5.56 6.52 7.46 8.33 6.67 4.14 7.35 7.35 6.09 8.00 6.67 9.52 6.82 6.41 3.29 9.09 5.26 5.45 10.96 6.10 7.61 8.89 10.38 5.91 5.00 7.27 6.78 7.27 6.67 4.24 3.85 5.63 10.34 K intron_retention drpr,I_chr3L_1720385_1723579 chr3L - chr3L_1724226_1730524 chr3L_1724225_1724226;chr3L_1730524_1730525 chr3L_1723992_1724225;chr3L_1730525_1731081 0.00 0.00 0.00 0.00 0.00 0.92 2.14 1.75 0.94 0.00 0.00 0.00 0.80 1.45 0.00 1.72 1.25 0.00 2.21 0.00 0.00 0.00 1.03 0.00 0.00 0.70 0.00 NA 0.00 0.00 1.31 0.00 0.00 1.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 2.10 0.00 0.00 0.00 K alternative_acceptor CG31211 chr3R + chr3R_7777961_7778362;chr3R_7777961_7778390 chr3R_7777961_7778368 chr3R_7777954_7777960;chr3R_7778391_7778487 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 16.67 0.00 0.00 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 9.09 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 K jcn_only_AD row,I_chr2R_11098574_11098633 chr2R - chr2R_11098574_11099081 chr2R_11098574_11098633 chr2R_11098474_11098573;chr2R_11099082_11099172 0.00 0.00 0.00 0.00 0.00 0.00 3.39 2.38 1.12 0.00 2.00 1.10 4.65 3.57 0.00 0.00 2.00 0.00 0.00 0.00 0.00 1.33 0.00 2.86 0.00 0.00 0.00 1.79 1.28 0.00 0.00 0.00 0.78 1.30 0.00 0.00 0.00 1.64 1.79 1.80 0.00 0.00 3.33 0.00 1.56 2.63 3.12 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 K alternative_donor CG3812 chrX + chrX_12659546_12661001 chrX_12659637_12661001 chrX_12661002_12661387;chrX_12659301_12659545 83.33 62.50 88.89 88.89 NA 83.33 81.82 80.00 86.21 NA NA 66.67 88.89 81.82 75.00 82.35 92.86 83.33 78.57 91.67 NA NA NA NA NA 85.71 88.89 NA NA NA 85.71 NA 83.33 94.74 71.43 NA NA NA NA 88.89 NA 80.00 80.00 85.71 NA 50.00 NA NA 86.36 50.00 62.50 83.33 NA NA 88.89 NA NA NA K jcn_only_AD Fs(2)Ket,I_chr2L_20734991_20735252,I_chr2L_20735091_20735305,I_chr2L_20735170_20735252,I_chr2L_20738976_20749527 chr2L + chr2L_20735170_20735252;chr2L_20735091_20735252 chr2L_20734991_20735252 chr2L_20735253_20735352;chr2L_20734943_20734990 0.92 0.00 0.00 1.10 3.45 0.00 2.91 0.64 0.73 NA 2.56 2.08 1.75 0.00 1.30 0.00 2.47 4.62 1.25 1.94 0.00 2.38 1.22 0.00 0.00 0.00 5.41 0.00 NA 2.38 2.33 NA 2.50 1.50 0.00 0.00 0.00 0.00 3.57 3.23 NA 0.00 1.64 2.17 NA 0.00 4.76 0.00 2.03 4.55 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette uzip,I_chr2R_20916008_20916468 chr2R + chr2R_20899701_20915225 chr2R_20899701_20900155;chr2R_20900230_20915225 chr2R_20900156_20900229 chr2R_20899595_20899700;chr2R_20915226_20915262 97.67 100.00 97.78 86.36 92.59 97.06 97.62 96.30 98.75 88.89 96.67 95.71 89.74 97.14 97.67 95.52 98.18 96.55 98.18 98.85 100.00 81.40 97.14 96.23 100.00 94.74 97.78 95.45 87.10 94.87 98.28 97.06 98.33 98.84 97.92 100.00 100.00 96.88 100.00 96.43 100.00 96.43 94.87 97.73 96.77 97.73 100.00 97.67 100.00 93.55 98.21 97.56 100.00 100.00 98.36 97.67 96.55 98.53 K jcn_only_AA Fibp,RI_chr3L_19810268_19810326 chr3L - chr3L_19809762_19809819;chr3L_19809780_19809819 chr3L_19809775_19809819 chr3L_19809820_19809920;chr3L_19809693_19809761 3.57 3.57 8.00 5.36 0.00 0.00 3.12 0.00 4.55 NA 4.35 2.56 NA 4.00 11.11 0.00 4.55 4.76 0.00 4.76 NA 0.00 6.90 2.63 NA 0.00 2.70 NA 0.00 NA 5.26 3.85 0.00 0.00 NA 0.00 3.45 0.00 4.65 8.11 NA 6.00 NA 9.09 4.35 0.00 0.00 7.32 0.00 0.00 5.88 5.00 NA 0.00 3.57 4.88 3.77 0.00 N intron_retention Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19562175_19562326 chr2R_19562174_19562175;chr2R_19562326_19562327 chr2R_19562327_19562386 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA 77.27 NA NA NA NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA K intron_retention Ntf-2,I_chrX_20906749_20909772 chrX + chrX_20907665_20909772 chrX_20907664_20907665;chrX_20909772_20909773 chrX_20907566_20907664;chrX_20909773_20909872 0.00 0.28 0.00 0.40 0.00 0.00 0.24 0.16 0.60 0.00 0.71 0.82 0.00 0.00 0.23 0.00 0.00 0.55 0.00 0.30 0.00 0.00 0.62 0.00 0.00 0.00 0.57 0.98 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.21 0.00 0.00 0.69 0.00 0.00 0.00 0.33 0.00 0.23 0.00 0.00 0.00 K intron_retention RpS15Aa chrX - chrX_13231573_13231635 chrX_13231572_13231573;chrX_13231635_13231636 chrX_13231538_13231572;chrX_13231636_13231706 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 97.06 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 92.31 100.00 NA 100.00 100.00 100.00 100.00 N multi_cassette boi,I_chrX_2363445_2363896 chrX - chrX_2339627_2344702 chrX_2339627_2339893;chrX_2340215_2340443;chrX_2340611_2340674;chrX_2340858_2340922;chrX_2341631_2344702 chrX_2339894_2340214;chrX_2340444_2340610;chrX_2340675_2340857;chrX_2340923_2341630 chrX_2338205_2339626;chrX_2344703_2344871 100.00 100.00 100.00 60.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor cwo,noncoding_15870,chr3R_6215619_6216520.0,chr3R_6216827_6217291.0,chr3R_6217556_6219555.0,chr3R_6219984_6221958.0 chr3R + chr3R_6215160_6222418;chr3R_6215160_6222423 chr3R_6215160_6222426 chr3R_6214846_6215159;chr3R_6222427_6222542 0.00 16.67 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 14.29 NA 18.18 NA NA 0.00 14.29 NA 6.25 7.14 0.00 0.00 NA 7.69 10.00 0.00 0.00 16.67 14.29 0.00 10.00 0.00 0.00 0.00 16.67 16.67 8.33 12.50 11.11 NA 16.67 NA NA NA 0.00 0.00 11.11 0.00 0.00 NA NA 0.00 NA NA 7.69 N intron_retention mth chr3L - chr3L_345886_346102 chr3L_345885_345886;chr3L_346102_346103 chr3L_345375_345885;chr3L_346103_346245 38.46 NA NA NA NA NA 57.14 38.46 35.29 NA NA 36.36 NA NA NA 45.00 NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 44.44 NA NA NA NA NA NA NA NA NA K jcn_only_AA CCS,I_chr2R_6009946_6010014 chr2R - chr2R_6009946_6010014;chr2R_6009964_6010014 chr2R_6009951_6010014 chr2R_6010015_6010040;chr2R_6009884_6009945 3.28 NA NA 8.70 NA NA 0.00 4.17 3.33 NA NA 9.52 NA NA NA NA NA NA 5.00 3.45 NA NA NA NA NA 5.00 NA NA NA NA 13.33 NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA NA 3.23 5.00 N alternative_acceptor JhI-26,I_chr2R_12177114_12177266 chr2R + chr2R_12178257_12178432;chr2R_12178257_12178348 chr2R_12178257_12178308 chr2R_12177457_12178256;chr2R_12178433_12178520 0.00 0.00 0.00 1.15 0.00 1.52 0.40 0.74 0.51 0.00 0.00 0.70 0.00 1.52 0.00 1.11 0.00 0.00 0.00 0.62 0.00 4.86 0.00 0.00 0.00 0.00 1.41 0.00 0.00 1.15 0.00 0.00 0.00 0.00 1.37 0.00 0.79 0.00 0.64 0.00 0.00 0.00 0.00 0.55 0.00 0.70 0.00 0.75 0.00 0.68 0.76 0.00 0.00 0.00 0.00 0.95 0.00 0.00 K intron_retention mRpL17,I_chr3L_267388_268219 chr3L + chr3L_265050_265111 chr3L_265049_265050;chr3L_265111_265112 chr3L_264791_265049;chr3L_265112_265540 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.90 0.00 1.02 1.64 0.00 0.00 0.00 0.00 1.36 0.93 0.00 0.00 0.00 1.23 0.00 1.34 1.37 6.45 0.00 3.70 0.00 0.00 1.44 1.54 1.08 0.63 0.00 1.52 1.52 0.00 0.43 0.00 0.00 2.40 0.52 0.00 1.80 0.93 0.00 0.76 1.33 1.24 0.00 0.00 1.50 0.00 0.66 K jcn_only_AD Zn72D,RF_chr3L_16100887_16102721,I_chr3L_16105199_16105253 chr3L - chr3L_16105199_16105299;chr3L_16105199_16105318;chr3L_16105199_16105431 chr3L_16105199_16105253 chr3L_16105099_16105198;chr3L_16105432_16105487 0.00 0.00 0.00 2.63 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 3.70 0.00 0.00 0.00 0.00 1.37 NA NA 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 4.35 2.78 NA 0.00 0.00 0.00 2.63 0.00 NA NA 0.00 NA 0.00 2.38 K cassette Med,CG1792 chr3R + chr3R_27438411_27438981 chr3R_27438411_27438608;chr3R_27438831_27438981 chr3R_27438609_27438830 chr3R_27438056_27438410;chr3R_27438982_27439596 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.26 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 98.57 100.00 K jcn_only_AD CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042888_5042960;chr2L_5042888_5043077 chr2L_5042888_5042983 chr2L_5042835_5042887;chr2L_5043078_5043083 10.91 NA NA 19.23 NA NA 24.00 11.11 10.53 NA NA 23.68 NA NA 16.67 9.09 NA NA 4.55 7.14 NA NA 9.09 10.71 NA NA NA NA 9.52 4.76 NA NA 12.50 12.50 NA NA NA NA NA 18.92 16.00 9.09 NA NA NA 6.67 9.09 25.00 19.35 NA 8.00 NA NA NA 30.00 NA 11.54 7.69 K jcn_only_AA l(3)82Fd,I_chr3R_1121686_1121886,I_chr3R_1147660_1148709 chr3R - chr3R_1121683_1121868 chr3R_1121686_1121868 chr3R_1121869_1122357;chr3R_1121586_1121682 98.18 100.00 96.15 98.61 100.00 94.12 97.26 97.20 98.63 100.00 98.15 97.52 96.43 100.00 97.59 96.05 98.48 100.00 100.00 99.25 97.92 100.00 98.59 100.00 91.18 97.10 100.00 91.30 96.97 97.67 97.78 92.31 100.00 98.99 96.97 100.00 100.00 97.14 98.68 98.75 96.55 98.54 98.18 100.00 100.00 100.00 100.00 97.96 97.58 95.83 96.30 96.08 91.43 93.10 100.00 100.00 97.44 100.00 K intron_retention aop,RI_chr2L_2160583_2171141 chr2L - chr2L_2158406_2158467 chr2L_2158405_2158406;chr2L_2158467_2158468 chr2L_2156487_2158405;chr2L_2158468_2159245 0.00 0.00 1.05 2.99 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.58 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 2.35 4.39 3.19 5.61 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.56 0.64 0.58 0.62 0.00 0.00 0.62 0.49 1.03 0.55 0.00 0.00 0.00 0.00 0.00 1.19 0.00 1.32 0.00 0.93 K intron_retention Snx6,RI_chr2L_8218680_8218853,I_chr2L_8230332_8238998 chr2L - chr2L_8219992_8220044 chr2L_8219991_8219992;chr2L_8220044_8220045 chr2L_8219870_8219991;chr2L_8220045_8220434 0.92 2.19 0.00 0.00 0.93 0.37 1.36 0.00 0.80 0.00 2.16 2.24 0.88 0.89 0.00 2.17 0.45 2.07 0.40 1.12 2.15 0.00 0.40 1.89 0.00 0.00 3.14 0.92 0.75 1.03 0.63 1.38 1.15 0.50 0.56 0.00 0.31 1.00 0.90 1.26 1.14 1.47 1.63 2.34 3.21 5.69 0.46 3.72 0.86 0.00 1.04 2.63 0.00 0.00 1.31 2.90 0.31 1.52 K intron_retention CG11107 chr2R + chr2R_3277016_3277582 chr2R_3277015_3277016;chr2R_3277582_3277583 chr2R_3276752_3277015;chr2R_3277583_3277705 9.52 7.23 12.12 17.11 9.38 12.28 10.26 12.00 11.83 9.68 5.88 12.09 18.42 14.58 12.24 16.67 20.69 10.00 15.62 8.26 14.29 7.41 9.02 4.85 9.09 10.71 11.32 8.54 8.89 3.77 20.00 17.65 9.52 9.41 11.11 0.00 7.06 6.94 6.42 10.71 9.43 12.24 5.56 10.26 5.41 7.81 7.14 14.29 12.87 8.05 9.09 6.35 6.38 5.13 13.16 6.38 3.03 10.91 K alternative_donor CG2177,I_chr4_334269_334329,I_chr4_334269_334505 chr4 - chr4_334269_334329;chr4_334269_334373 chr4_334269_334324 chr4_334169_334268;chr4_334374_334429 9.94 8.89 8.64 11.73 10.34 10.29 26.51 13.75 14.81 2.50 14.63 7.05 11.39 10.00 8.49 8.06 14.58 6.77 9.09 7.22 10.61 6.67 14.08 6.12 7.69 9.09 11.11 6.25 8.64 7.94 16.49 9.09 12.15 11.94 6.52 4.05 20.83 14.81 5.00 9.17 11.84 10.48 12.12 8.47 8.22 13.13 10.77 8.70 9.94 15.15 11.59 6.67 4.44 8.89 11.46 10.64 11.29 6.19 K intron_retention CG30390,CG9752 chr2R - chr2R_17182716_17182771 chr2R_17182715_17182716;chr2R_17182771_17182772 chr2R_17181907_17182715;chr2R_17182772_17182871 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG14235,noncoding_24847,CG18809,noncoding_24848 chrX - chrX_19635236_19638294;chrX_19635199_19638294 chrX_19635202_19638294 chrX_19638295_19638317;chrX_19634765_19635198 55.30 54.20 55.04 56.88 53.27 52.39 56.45 52.37 53.89 59.57 54.26 56.05 54.39 55.30 49.60 56.91 57.14 51.80 56.02 55.11 52.20 57.74 56.78 55.23 58.42 56.24 51.95 54.03 63.01 53.07 58.55 50.55 68.15 54.87 59.65 60.99 55.95 49.46 54.23 51.86 61.18 52.33 59.50 56.26 59.13 61.19 54.73 59.31 55.76 58.54 53.45 58.82 54.58 54.87 59.33 50.71 54.53 57.80 K intron_retention kay,noncoding_19957,R_chr3R_25614823_25615439,E_chr3R_25616137_25617114 chr3R + chr3R_25599544_25617114 chr3R_25599543_25599544;chr3R_25617114_25617115 chr3R_25598998_25599543;chr3R_25617115_25617214 5.88 5.13 8.24 12.15 9.23 7.22 10.75 11.36 8.28 8.60 14.04 10.22 10.71 9.33 7.14 11.69 15.07 14.86 12.16 9.70 16.33 4.83 5.19 6.59 5.93 5.56 4.59 8.57 3.81 4.64 8.79 3.12 4.50 8.20 6.60 5.14 3.95 5.49 5.84 3.65 3.31 7.00 5.88 3.87 3.20 3.37 2.07 4.40 8.38 1.45 5.59 5.61 0.61 2.36 7.69 2.08 2.10 2.68 K jcn_only_AD I_chr3R_16141663_16144698,CG5077,I_chr3R_16147605_16147670 chr3R + chr3R_16146174_16147197 chr3R_16146597_16147197 chr3R_16147198_16147358;chr3R_16145951_16146173 0.12 0.54 0.00 0.00 0.00 0.00 0.24 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.26 0.17 0.25 0.00 0.41 0.26 0.00 0.68 0.25 0.42 0.00 0.26 0.22 0.00 0.10 0.16 0.00 0.40 0.22 1.09 0.46 0.00 0.22 0.12 0.36 1.15 0.00 0.59 0.00 0.12 0.28 0.28 0.72 0.00 0.00 0.00 0.00 0.00 1.20 0.12 K alternative_acceptor lola,I_chr2R_6419625_6419686,I_chr2R_6421474_6422304,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6421474_6422354 chr2R_6421904_6422354 chr2R_6422355_6422404;chr2R_6421381_6421473 0.34 0.00 0.00 0.57 2.00 0.00 0.75 0.43 0.48 0.00 1.64 0.63 0.00 0.99 0.85 0.60 1.06 1.41 0.87 0.75 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 1.05 0.00 0.34 1.06 0.00 0.00 0.00 0.00 0.00 1.14 0.00 1.05 1.15 1.00 0.00 1.02 1.79 0.45 1.33 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.69 K cassette Dscam,I_chr2R_3212243_3212342,F_chr2R_3219886_3228832,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3208270_3210064 chr2R_3208270_3209087;chr2R_3209155_3210064 chr2R_3209088_3209154 chr2R_3207156_3208269;chr2R_3210065_3210223 91.55 100.00 92.86 97.30 92.86 90.91 53.33 91.67 91.43 NA 50.00 95.00 69.23 90.91 100.00 93.33 100.00 91.67 87.50 93.75 90.91 88.57 89.47 83.33 85.71 84.62 93.75 91.67 78.95 93.75 95.00 90.00 88.89 95.24 100.00 87.50 92.31 90.91 88.24 96.30 100.00 96.43 90.91 90.91 81.82 93.33 94.44 93.33 92.86 88.89 88.24 90.91 77.78 100.00 95.65 94.12 84.21 90.91 K alternative_acceptor aux chr3R + chr3R_47040_47501 chr3R_47040_47477 chr3R_46840_47039;chr3R_47502_47708 100.00 100.00 98.39 100.00 100.00 100.00 98.33 96.55 100.00 100.00 100.00 98.99 100.00 97.56 100.00 100.00 100.00 100.00 100.00 99.28 100.00 100.00 100.00 97.26 100.00 97.96 98.46 98.15 99.23 98.95 98.46 98.21 100.00 100.00 98.31 100.00 100.00 98.59 97.65 100.00 98.57 98.85 100.00 100.00 100.00 100.00 100.00 97.96 99.06 100.00 100.00 100.00 98.04 100.00 100.00 100.00 97.62 99.26 K intron_retention Tequila chr3L + chr3L_9080889_9080948 chr3L_9080888_9080889;chr3L_9080948_9080949 chr3L_9080849_9080888;chr3L_9080949_9081215 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 NA NA 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Cpsf160 chr2R - chr2R_10389967_10390140 chr2R_10389967_10390035 chr2R_10389403_10389966;chr2R_10390141_10390978 100.00 100.00 98.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 97.87 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention TppII,GLaz chr2R - chr2R_9042315_9042374 chr2R_9042314_9042315;chr2R_9042374_9042375 chr2R_9041319_9042314;chr2R_9042375_9042486 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG7337,I_chr2L_1910010_1910066,RI_chr2L_1911951_1913208,RI_chr2L_1912284_1913208,I_chr2L_1938620_1938887,I_chr2L_1942183_1942233 chr2L + chr2L_1912284_1913208;chr2L_1911870_1913208;chr2L_1911951_1913208 chr2L_1912235_1913208 chr2L_1913209_1913308;chr2L_1911851_1911869 4.26 11.11 0.00 5.56 0.00 10.00 4.17 4.76 3.85 NA 0.00 10.53 16.67 6.25 0.00 3.45 9.09 7.69 10.00 0.00 0.00 0.00 0.00 11.11 0.00 28.57 9.09 NA NA 0.00 7.69 NA NA 4.35 0.00 0.00 NA 0.00 NA 18.18 NA 4.76 9.09 0.00 NA NA NA 0.00 3.70 NA 7.14 0.00 NA NA 6.67 NA NA NA K alternative_acceptor cdc2c,RI_chr3R_16562395_16562445 chr3R + chr3R_16562395_16562453 chr3R_16562395_16562445 chr3R_16562295_16562394;chr3R_16562454_16562545 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 6.25 NA NA NA NA NA NA NA 3.23 NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA K alternative_acceptor Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654157,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15648806_15649136 chrX_15648833_15649136 chrX_15649137_15649180;chrX_15648519_15648805 35.71 31.25 36.00 45.45 NA 50.00 42.50 36.51 40.48 NA 38.46 35.90 70.83 44.83 30.43 45.28 20.00 38.89 30.77 26.67 44.44 30.43 53.33 56.25 NA 40.00 47.06 NA 26.32 26.32 35.29 24.00 33.33 35.56 22.22 50.00 NA NA NA 28.57 35.71 31.71 34.62 25.00 21.43 24.24 36.36 33.33 40.43 35.71 42.11 33.33 NA NA 41.38 NA 45.45 34.04 K alternative_donor BEAF-32,I_chr2R_10658570_10659304,noncoding_6875 chr2R + chr2R_10658570_10659304 chr2R_10659148_10659304 chr2R_10659305_10659323;chr2R_10658497_10658569 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 88.89 100.00 100.00 K intron_retention lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6394546_6419543,I_chr2R_6394664_6395833,I_chr2R_6397642_6398119,RI_chr2R_6403557_6403850,I_chr2R_6403557_6406705,I_chr2R_6404486_6419543,R_chr2R_6408775_6419537,I_chr2R_6409616_6419543,I_chr2R_6413368_6414281,I_chr2R_6419625_6419686,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6389968_6419543 chr2R_6389967_6389968;chr2R_6419543_6419544 chr2R_6389863_6389967;chr2R_6419544_6419624 84.62 63.64 83.33 81.82 88.89 84.62 39.13 78.26 92.31 NA 90.91 88.24 90.00 91.67 100.00 90.00 NA 69.23 90.00 76.67 NA 35.71 77.27 76.92 100.00 88.89 75.00 92.86 63.64 NA 83.33 77.78 92.86 93.33 100.00 90.00 94.44 81.82 76.47 66.67 NA 81.82 90.00 92.31 NA NA NA 70.00 85.71 NA 82.35 75.00 NA NA 90.00 88.89 NA 84.62 K alternative_donor GXIVsPLA2,I_chr3L_15948429_15948487,I_chr3L_15950680_15950738 chr3L + chr3L_15948429_15948487;chr3L_15948415_15948487 chr3L_15948410_15948487 chr3L_15948488_15948587;chr3L_15948329_15948409 69.23 NA 55.56 69.23 NA NA 76.92 NA NA NA NA 60.00 NA NA 72.73 78.57 NA NA NA 14.29 72.73 NA NA NA NA NA NA NA NA NA 44.44 NA NA NA NA NA NA NA NA NA NA 61.54 NA NA NA NA NA NA 84.21 NA NA NA NA NA NA NA NA NA K intron_retention CG31033,RI_chr3R_25658089_25658914 chr3R - chr3R_25658095_25658914 chr3R_25658094_25658095;chr3R_25658914_25658915 chr3R_25658071_25658094;chr3R_25658915_25659003 15.38 NA NA 7.41 NA NA 3.45 46.15 29.41 NA NA 34.78 NA NA NA 8.33 14.29 NA 33.33 11.11 NA NA 11.11 NA NA 0.00 NA NA 56.25 NA NA NA NA 17.39 NA 4.76 16.67 NA NA 38.89 12.00 30.00 NA NA NA NA NA NA 15.38 NA 11.11 NA NA NA NA NA NA 27.78 K alternative_donor CG4658,I_chr2L_9958819_9958939 chr2L + chr2L_9958819_9958939 chr2L_9958886_9958939 chr2L_9958940_9959039;chr2L_9958719_9958818 100.00 98.00 97.44 100.00 100.00 96.77 100.00 98.31 99.02 94.74 100.00 98.59 96.67 100.00 98.08 97.73 97.62 100.00 100.00 100.00 97.56 98.18 100.00 97.92 97.06 97.14 100.00 100.00 100.00 100.00 97.83 100.00 97.73 100.00 96.67 100.00 100.00 97.92 98.57 100.00 100.00 100.00 100.00 100.00 97.92 100.00 97.92 100.00 100.00 97.73 98.18 97.06 100.00 100.00 100.00 100.00 100.00 100.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2392054 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2389073;chrX_2389272_2390808;chrX_2390959_2391350;chrX_2391522_2392054 chrX_2387584_2387709;chrX_2388437_2388670;chrX_2389074_2389271;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2392055_2392148 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA 66.67 NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention AP-47,I_chr3R_5385123_5385196,CG9393 chr3R - chr3R_5388818_5388911 chr3R_5388817_5388818;chr3R_5388911_5388912 chr3R_5388539_5388817;chr3R_5388912_5389058 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention DppIII,CG7352 chr3R + chr3R_4170746_4170814 chr3R_4170745_4170746;chr3R_4170814_4170815 chr3R_4170688_4170745;chr3R_4170815_4171121 2.98 4.17 3.85 2.94 0.00 0.00 1.30 4.17 5.68 10.53 0.00 2.38 2.33 0.00 9.09 2.78 NA 0.00 13.79 1.00 2.63 6.67 3.39 3.92 5.26 0.00 10.53 16.22 8.33 6.45 5.26 6.25 3.77 3.03 0.00 2.56 5.88 3.57 6.56 4.08 0.00 0.00 12.50 0.00 0.00 2.56 0.00 11.11 1.79 3.23 5.88 0.00 0.00 0.00 0.00 0.00 0.00 8.33 K intron_retention CG8449,RI_chr3R_9096632_9096844 chr3R - chr3R_9096788_9096844 chr3R_9096787_9096788;chr3R_9096844_9096845 chr3R_9096691_9096787;chr3R_9096845_9096944 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.72 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.70 K mutually_exclusive CG4495,I_chr2L_7183323_7183502 chr2L + chr2L_7182900_7183502,chr2L_7183666_7183777 chr2L_7182900_7183162,chr2L_7183323_7183777 chr2L_7183503_7183665 chr2L_7183163_7183322 chr2L_7182707_7182899;chr2L_7183778_7183815 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention babo chr2R + chr2R_4843364_4846611 chr2R_4843363_4843364;chr2R_4846611_4846612 chr2R_4843218_4843363;chr2R_4846612_4846839 48.48 NA NA 81.82 NA NA 78.26 40.00 48.48 NA NA 29.63 47.06 NA NA 52.38 NA NA 58.33 29.17 50.00 NA 53.33 61.54 NA NA 30.77 NA NA NA 38.89 NA NA 56.52 NA NA NA NA NA NA NA 45.83 NA 57.14 NA NA NA 28.57 47.83 NA NA 50.00 NA NA 45.45 NA NA NA K cassette cals,I_chr4_1139644_1142084,RI_chr4_1141233_1142084 chr4 - chr4_1141428_1143848 chr4_1141428_1142084;chr4_1142216_1143848 chr4_1142085_1142215 chr4_1141285_1141427;chr4_1143849_1143862 100.00 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 94.12 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 K intron_retention TMS1 chr3L + chr3L_16406904_16406968 chr3L_16406903_16406904;chr3L_16406968_16406969 chr3L_16406348_16406903;chr3L_16406969_16407078 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.57 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042888_5043077;chr2L_5042888_5042983 chr2L_5042888_5042960 chr2L_5042835_5042887;chr2L_5043078_5043083 74.63 73.33 85.71 71.43 68.42 80.00 68.00 69.57 74.63 100.00 47.83 65.08 33.33 67.86 71.88 80.00 69.57 71.43 83.87 80.00 68.00 85.71 67.74 80.77 83.33 81.48 80.00 68.75 66.67 85.71 71.43 78.57 83.33 80.39 57.89 83.33 54.84 84.21 86.36 75.76 81.25 83.33 60.87 87.88 82.35 82.76 74.07 73.68 70.91 72.22 85.19 71.43 70.00 84.21 54.05 86.96 72.41 90.91 K jcn_only_AA CG2144 chr2R + chr2R_3409187_3409246 chr2R_3409187_3409225 chr2R_3408456_3409186;chr2R_3409247_3410051 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 NA K jcn_only_AD CG5953,snoRNA:Me28S-C1237 chr2L - chr2L_16528440_16532720;chr2L_16528440_16532707 chr2L_16528440_16532458 chr2L_16527390_16528439;chr2L_16532721_16532862 0.00 NA NA NA NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA 2.78 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 NA 0.00 K intron_retention CG8202 chr3R + chr3R_4558206_4558265 chr3R_4558205_4558206;chr3R_4558265_4558266 chr3R_4558092_4558205;chr3R_4558266_4558437 0.00 0.00 0.00 4.00 0.00 3.45 0.00 0.00 1.08 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 2.27 1.43 10.81 6.25 5.06 5.88 8.16 2.17 7.55 0.00 0.00 4.17 0.00 0.00 1.45 3.61 0.00 4.69 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.51 0.00 2.90 0.00 0.00 0.00 2.00 0.00 0.00 3.45 K intron_retention RI_chr2L_8218680_8218853,Pvr,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8223985_8224051 chr2L_8223984_8223985;chr2L_8224051_8224052 chr2L_8223825_8223984;chr2L_8224052_8224531 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG40228,noncoding_14406,RI_chr3LHet_2190419_2190470 chr3LHet - chr3LHet_2190419_2190556;chr3LHet_2190419_2190563;chr3LHet_2190419_2190548;chr3LHet_2190419_2190470 chr3LHet_2190419_2190561 chr3LHet_2190319_2190418;chr3LHet_2190564_2190570 15.96 10.31 15.15 17.84 8.82 15.12 10.61 16.94 13.93 NA 15.15 15.96 8.33 9.65 7.50 17.57 9.30 16.09 15.97 24.58 16.67 9.52 8.06 19.44 19.61 15.79 17.98 17.65 14.52 17.95 14.86 18.84 13.64 15.87 15.79 22.99 NA 17.78 12.31 13.51 26.13 13.33 17.39 20.31 17.92 16.32 10.77 20.16 17.97 23.86 13.79 18.00 11.69 19.57 15.32 19.13 14.63 21.88 K intron_retention CG9306,I_chr2L_13370565_13370841,I_chr2L_13370795_13370841 chr2L - chr2L_13370764_13370841 chr2L_13370763_13370764;chr2L_13370841_13370842 chr2L_13370696_13370763;chr2L_13370842_13370918 0.00 0.00 0.00 0.51 0.00 1.67 0.60 0.00 0.95 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.40 0.33 0.00 1.03 1.02 0.93 3.75 0.75 0.93 0.60 1.29 0.00 0.00 0.80 0.00 0.00 0.25 0.00 0.00 0.71 1.14 0.00 0.48 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 K intron_retention CG30118,I_chr2R_14320281_14325712,I_chr2R_14325118_14325712 chr2R - chr2R_14318863_14318920 chr2R_14318862_14318863;chr2R_14318920_14318921 chr2R_14318678_14318862;chr2R_14318921_14319251 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor RpS16,RI_chr2R_18493796_18494013,I_chr2R_18494146_18494441,snoRNA:Me28S-G2173 chr2R + chr2R_18494146_18494441 chr2R_18494146_18494438 chr2R_18494046_18494145;chr2R_18494442_18494541 99.98 99.97 99.96 99.98 99.96 100.00 100.00 100.00 100.00 100.00 100.00 99.98 100.00 100.00 100.00 99.96 100.00 100.00 99.95 99.98 99.96 99.91 100.00 100.00 100.00 99.95 99.97 99.91 100.00 100.00 100.00 99.94 100.00 99.97 100.00 100.00 99.98 99.98 99.98 99.93 100.00 99.95 99.95 99.97 100.00 100.00 99.98 100.00 100.00 99.98 100.00 100.00 99.98 99.97 100.00 99.97 99.98 99.96 K alternative_donor Mtch,RI_chr3L_184729_185366,E_chr3L_185249_186012,EI_chr3L_185308_185366,I_chr3L_185367_185925 chr3L + chr3L_185304_185366;chr3L_184729_185366 chr3L_185308_185366 chr3L_185367_185441;chr3L_184713_184728 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 1.75 0.00 0.00 2.33 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 4.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 2.22 K cassette Ripalpha,I_chr2L_10200237_10200415 chr2L - chr2L_10200237_10200415 chr2L_10200237_10200290;chr2L_10200357_10200415 chr2L_10200291_10200356 chr2L_10200137_10200236;chr2L_10200416_10200515 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 90.00 92.86 100.00 100.00 92.31 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette CG10353,I_chrX_11775936_11778830,I_chrX_11778617_11778830,RI_chrX_11780885_11780988 chrX - chrX_11775936_11778830;chrX_11775936_11780988 chrX_11775936_11777133;chrX_11777655_11778830,chrX_11777655_11780988 chrX_11777134_11777654 chrX_11775836_11775935;chrX_11780989_11781085 97.92 100.00 98.00 92.54 100.00 100.00 97.01 100.00 98.37 95.65 97.67 97.78 100.00 100.00 98.11 98.15 98.08 97.92 100.00 96.69 100.00 95.83 97.01 98.31 94.67 97.83 95.24 96.67 96.15 93.83 98.21 96.23 95.80 97.85 98.48 93.90 99.38 97.44 97.90 94.12 89.33 97.74 97.67 95.45 97.94 95.65 98.55 95.38 100.00 98.48 97.94 98.18 98.73 98.31 98.04 97.40 100.00 100.00 K jcn_only_AA Paip2,noncoding_16407,I_chr3R_8809774_8809832 chr3R + chr3R_8807110_8809456 chr3R_8807110_8809436 chr3R_8807046_8807109;chr3R_8809457_8809605 0.00 0.00 0.00 1.04 0.00 0.00 1.64 0.89 2.82 0.00 2.04 0.86 0.00 0.00 0.00 1.88 1.79 0.00 0.00 1.12 0.00 1.18 0.00 0.00 4.17 1.64 1.96 0.00 0.00 0.00 1.18 4.17 1.19 0.00 3.45 3.39 0.00 0.00 1.64 0.00 1.96 2.75 0.00 0.00 0.00 0.00 2.08 1.05 0.94 1.96 0.00 2.70 0.00 0.00 0.00 2.86 0.00 1.35 K intron_retention Klc,I_chr3L_12741779_12743062,I_chr3L_12741783_12742943,I_chr3L_12741838_12743062 chr3L - chr3L_12741783_12742809 chr3L_12741782_12741783;chr3L_12742809_12742810 chr3L_12741738_12741782;chr3L_12742810_12742868 6.67 6.67 NA NA NA NA NA NA 11.11 NA 0.00 15.00 NA NA 7.69 NA NA NA NA 16.67 NA NA NA NA NA 33.33 NA NA NA NA 5.26 NA NA 15.79 NA NA NA NA NA 0.00 NA NA NA 0.00 NA 0.00 NA NA 10.53 NA 0.00 NA NA NA NA NA 0.00 NA K intron_retention Got1,CG30094 chr2R + chr2R_12028079_12028138 chr2R_12028078_12028079;chr2R_12028138_12028139 chr2R_12028005_12028078;chr2R_12028139_12029440 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA CG8108,EI_chr3L_9859462_9859590 chr3L + chr3L_9859462_9860377;chr3L_9859462_9860413 chr3L_9859462_9859590 chr3L_9859414_9859461;chr3L_9860414_9860844 9.82 5.04 10.96 17.11 6.94 9.59 18.18 5.56 9.46 13.79 7.89 9.82 12.73 5.88 7.27 14.81 4.48 2.86 3.03 16.06 15.66 5.88 12.15 11.29 11.11 17.65 9.82 16.67 14.63 11.11 45.21 15.69 11.22 9.00 10.34 9.38 9.78 9.85 5.74 12.61 10.00 5.23 8.70 14.47 7.46 5.49 10.26 8.62 11.59 7.14 11.73 12.12 0.96 3.81 8.33 5.50 2.21 1.22 K jcn_only_AA CG14709,F_chr3R_7396835_7396923,F_chr3R_7405343_7405539 chr3R + chr3R_7395557_7396774 chr3R_7395557_7396748 chr3R_7394972_7395556;chr3R_7396775_7396834 98.94 98.02 98.91 99.20 100.00 100.00 99.35 97.60 100.00 97.01 98.99 98.85 100.00 100.00 98.06 99.07 100.00 97.96 98.11 100.00 100.00 97.83 98.61 99.10 97.83 98.90 97.44 100.00 98.41 96.20 96.12 100.00 96.23 99.31 98.55 100.00 96.90 98.96 97.87 99.28 100.00 98.86 97.06 99.28 100.00 100.00 98.18 98.59 98.64 98.36 98.33 98.90 NA 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA kat80,I_chrX_16162233_16162306,I_chrX_16168725_16169287 chrX - chrX_16162236_16162306 chrX_16162239_16162306 chrX_16162307_16162406;chrX_16162105_16162235 44.44 51.56 41.79 42.86 39.53 52.63 37.50 49.53 40.88 50.00 45.76 42.86 42.31 27.94 35.14 34.15 44.23 40.43 38.60 43.44 48.78 46.48 39.44 35.00 40.91 57.41 30.23 54.29 39.53 43.64 39.34 42.50 45.45 57.33 48.78 53.33 40.60 48.68 45.61 49.38 48.15 47.83 46.51 45.83 45.61 45.10 47.17 52.46 49.49 40.00 38.67 44.44 45.65 37.74 45.59 39.39 48.39 42.11 K intron_retention mus210,RI_chr2R_11200323_11202128 chr2R + chr2R_11204653_11204713 chr2R_11204652_11204653;chr2R_11204713_11204714 chr2R_11204185_11204652;chr2R_11204714_11204882 0.00 0.00 0.00 2.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.43 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.40 0.00 0.80 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11838972_11839376;chr2R_11838972_11839411 chr2R_11838972_11839458 chr2R_11838888_11838971;chr2R_11839459_11839486 0.00 NA NA NA NA NA NA NA 3.57 NA NA 12.00 NA NA 0.00 NA NA NA NA 7.14 NA 6.67 2.70 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 NA NA NA NA 3.57 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA K intron_retention CG13923,CG12022 chr3L + chr3L_1803568_1803794 chr3L_1803567_1803568;chr3L_1803794_1803795 chr3L_1803433_1803567;chr3L_1803795_1804355 0.00 0.00 0.00 5.88 0.00 NA 10.00 0.00 3.57 NA NA 2.94 NA 7.14 0.00 0.00 0.00 NA NA 2.94 NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 7.69 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 5.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 7.41 0.00 0.00 0.00 0.00 K intron_retention CG1109,CG1347 chr3R + chr3R_1486971_1487260 chr3R_1486970_1486971;chr3R_1487260_1487261 chr3R_1486647_1486970;chr3R_1487261_1487382 1.75 0.00 0.00 0.00 0.00 0.00 2.38 5.26 5.56 0.00 0.00 3.77 0.00 3.23 5.13 4.65 0.00 0.00 0.00 2.82 0.00 5.41 1.79 2.44 0.00 5.41 6.98 9.52 5.00 0.00 0.00 0.00 3.85 3.92 6.45 5.13 0.00 3.33 3.92 0.00 0.00 2.78 0.00 0.00 0.00 2.13 3.70 0.00 1.75 0.00 7.50 0.00 4.76 5.56 0.00 0.00 0.00 4.08 K intron_retention l(1)G0232 chrX - chrX_9523021_9523085 chrX_9523020_9523021;chrX_9523085_9523086 chrX_9522870_9523020;chrX_9523086_9523365 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 K intron_retention Smr,C_chrX_12580865_12625568,E_chrX_12582848_12583674 chrX - chrX_12583245_12583323 chrX_12583244_12583245;chrX_12583323_12583324 chrX_12580031_12583244;chrX_12583324_12584071 1.03 0.00 0.00 0.85 0.00 0.00 0.00 1.28 2.15 0.00 0.00 1.71 4.05 1.03 2.05 0.00 1.32 0.00 0.00 1.84 0.00 2.78 1.98 1.03 2.56 0.00 1.06 2.80 1.52 2.82 0.00 0.00 1.60 1.00 0.81 4.76 0.35 0.45 0.41 1.16 1.63 0.93 0.00 1.07 0.00 2.14 0.00 2.08 0.78 3.03 1.38 1.94 0.00 1.71 1.48 0.56 0.00 1.81 K alternative_donor exd chrX + chrX_15887147_15887504;chrX_15886884_15887504;chrX_15886821_15887504;chrX_15886888_15887504;chrX_15886958_15887504;chrX_15886802_15887504;chrX_15887006_15887504 chrX_15886827_15887504 chrX_15887505_15887806;chrX_15886739_15886801 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention CG11347,I_chr3L_4407226_4417819,I_chr3L_4412551_4417819 chr3L + chr3L_4414458_4417819 chr3L_4414457_4414458;chr3L_4417819_4417820 chr3L_4414396_4414457;chr3L_4417820_4417919 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 10.00 NA 0.00 NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD None chrU - chrU_1092161_1092218 chrU_1092161_1092213 96.15 87.50 92.86 94.92 NA 93.55 96.20 94.51 96.04 NA 85.71 94.81 97.14 100.00 100.00 96.40 95.83 NA 98.11 93.88 96.43 NA 96.88 100.00 NA NA NA NA NA NA 94.12 NA NA 92.71 NA NA NA NA NA 96.77 96.00 97.33 98.00 100.00 NA 97.14 90.48 NA 93.07 100.00 97.30 95.83 96.15 NA 97.73 89.66 100.00 91.30 K alternative_donor Pax,RI_chr2L_19404683_19426205,RI_chr2L_19404823_19409403,I_chr2L_19419985_19423267,I_chr2L_19419985_19423278,I_chr2L_19419985_19423414,I_chr2L_19420081_19423267,I_chr2L_19420081_19423278 chr2L - chr2L_19420192_19423414;chr2L_19420192_19423278 chr2L_19420192_19423267 chr2L_19420186_19420191;chr2L_19423415_19423487 35.41 12.50 50.00 37.50 NA 37.50 45.45 57.14 40.00 NA NA 13.33 NA NA 33.33 15.38 NA NA 50.00 26.67 NA 20.00 30.00 40.00 NA NA NA 33.33 NA 16.67 57.14 NA 33.33 46.15 33.33 33.33 NA 75.00 NA 40.00 NA 42.86 NA 20.00 NA 12.50 33.33 37.50 30.00 NA 14.29 NA NA NA 50.00 40.00 NA 40.00 K alternative_donor wdb,I_chr3R_23394314_23406731,I_chr3R_23394314_23406794,I_chr3R_23394314_23407159,RI_chr3R_23394314_23407186,I_chr3R_23394314_23407412,I_chr3R_23394314_23407715,I_chr3R_23394314_23407721,RI_chr3R_23406048_23406731,RI_chr3R_23406048_23406794,I_chr3R_23406048_23406928,RI_chr3R_23406048_23407402 chr3R - chr3R_23406048_23406865;chr3R_23406048_23407402;chr3R_23406048_23407723 chr3R_23406048_23406928 chr3R_23405948_23406047;chr3R_23407724_23407815 7.41 5.56 10.34 8.11 7.69 15.00 3.33 8.11 9.30 8.33 15.38 6.67 25.00 4.17 10.34 4.00 4.76 23.81 18.75 6.67 11.54 4.94 7.14 6.45 7.41 7.89 8.82 8.33 11.63 11.54 4.35 5.26 26.92 8.82 3.70 2.56 3.57 4.17 10.00 8.33 11.54 6.67 5.88 5.00 4.55 13.04 0.00 8.89 6.98 8.70 4.88 5.88 8.33 0.00 7.14 5.26 7.69 6.25 K intron_retention CG9098 chr2L - chr2L_6012112_6012178 chr2L_6012111_6012112;chr2L_6012178_6012179 chr2L_6011986_6012111;chr2L_6012179_6012330 0.00 NA NA 25.00 NA NA NA 0.00 0.00 NA NA 5.56 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA N cassette CG34394,I_chr2L_3365674_3365965,RI_chr2L_3365677_3365965,I_chr2L_3365701_3365757 chr2L - chr2L_3364941_3367244 chr2L_3364941_3365426;chr2L_3365674_3367244 chr2L_3365427_3365673 chr2L_3364744_3364940;chr2L_3367245_3367719 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG3632,RI_chrX_16195880_16196242 chrX + chrX_16195880_16196242 chrX_16195951_16196242 chrX_16196243_16196325;chrX_16195846_16195879 96.88 100.00 96.00 85.19 92.86 95.65 100.00 94.44 97.96 92.86 93.75 97.14 100.00 100.00 100.00 90.62 95.00 95.24 95.24 98.21 100.00 100.00 97.30 100.00 100.00 95.24 100.00 94.12 96.00 100.00 96.43 95.00 85.71 97.30 100.00 100.00 96.88 95.65 100.00 93.33 100.00 97.87 93.75 96.30 96.30 97.14 100.00 100.00 97.67 97.14 93.94 93.75 84.21 100.00 96.43 96.00 97.44 96.88 K cassette cmet chr2L - chr2L_11266558_11267150 chr2L_11266558_11266881;chr2L_11267047_11267150 chr2L_11266882_11267046 chr2L_11262819_11266557;chr2L_11267151_11268052 15.04 16.00 28.57 11.90 22.73 24.14 15.38 6.00 15.07 NA 30.00 14.00 10.34 9.68 10.71 31.82 16.67 21.74 14.63 10.20 27.27 23.81 6.82 16.00 4.35 7.41 10.71 23.08 30.77 17.65 25.00 NA 26.92 9.09 12.90 9.38 6.25 4.35 7.41 30.00 NA 16.36 19.23 15.00 44.44 12.50 14.29 25.00 13.16 NA 11.76 14.81 NA NA 18.18 NA 7.69 25.00 K alternative_donor CrebB-17A,I_chrX_18261213_18269281,I_chrX_18265640_18266060,I_chrX_18265982_18266063 chrX + chrX_18267235_18267319 chrX_18267247_18267319 chrX_18267320_18267488;chrX_18267067_18267234 58.43 53.33 62.07 57.58 58.33 54.55 58.33 57.14 57.02 56.00 60.38 58.43 55.26 62.50 60.32 58.33 48.84 58.33 66.67 61.90 60.42 65.22 62.22 56.94 69.09 61.70 65.38 72.55 56.90 46.58 60.71 52.78 48.44 58.23 63.83 61.11 61.29 52.56 62.00 54.74 46.67 60.42 58.97 51.11 53.62 52.38 66.67 70.00 55.65 53.33 61.25 68.29 66.67 51.02 66.13 63.04 59.02 47.17 N alternative_acceptor RhoGAP18B chrX - chrX_19047302_19047377 chrX_19047314_19047377 chrX_19047378_19047520;chrX_19047061_19047301 79.79 73.33 75.00 87.18 84.62 83.10 78.07 89.60 82.94 76.53 76.06 82.64 86.27 85.29 78.26 85.86 76.06 64.71 82.95 82.66 73.77 63.12 77.58 82.71 84.13 97.56 89.80 80.65 87.74 83.23 78.79 81.69 84.59 81.20 83.84 79.12 65.28 67.14 73.94 67.86 89.66 83.53 85.25 64.75 67.83 77.25 66.29 77.73 83.54 79.79 80.42 69.05 73.08 71.83 80.23 60.95 72.08 78.26 K cassette eag chrX + chrX_14894862_14898067 chrX_14894862_14896144;chrX_14896436_14898067 chrX_14896145_14896435 chrX_14894660_14894861;chrX_14898068_14898097 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA 100.00 NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA K intron_retention RI_chr2R_17599884_17602910,HmgD,RI_chr2R_17600940_17602910,I_chr2R_17600947_17602910,I_chr2R_17601672_17603325,I_chr2R_17602490_17602910 chr2R + chr2R_17600893_17602910 chr2R_17600892_17600893;chr2R_17602910_17602911 chr2R_17600847_17600892;chr2R_17602911_17603010 0.00 0.00 0.00 3.17 0.00 0.00 0.00 0.00 1.75 NA 0.00 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 NA NA NA NA 0.00 NA NA NA 0.00 0.00 3.33 0.00 1.63 NA NA NA NA NA 7.41 NA 4.03 0.00 NA 2.17 0.00 NA 0.00 2.31 NA NA NA NA NA 0.00 NA NA 2.33 K intron_retention TepII,I_chr2L_7696207_7698724,I_chr2L_7696808_7697006,I_chr2L_7697158_7697976,I_chr2L_7697582_7697976 chr2L - chr2L_7696207_7697400 chr2L_7696206_7696207;chr2L_7697400_7697401 chr2L_7696107_7696206;chr2L_7697401_7697432 4.35 NA NA 9.52 NA NA 3.85 4.76 7.69 NA NA 4.35 NA 0.00 NA 3.85 NA NA 0.00 8.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 11.54 NA NA NA NA NA NA 22.73 NA NA NA NA NA 0.00 NA NA NA K intron_retention Lip4 chr2L + chr2L_10530256_10530313 chr2L_10530255_10530256;chr2L_10530313_10530314 chr2L_10530078_10530255;chr2L_10530314_10530669 0.00 0.00 0.00 1.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.92 0.00 0.00 0.00 0.57 2.42 1.70 2.82 1.05 0.78 0.54 1.60 0.87 0.96 0.98 1.55 0.00 1.47 1.01 1.22 0.99 0.00 0.00 0.67 0.00 0.82 1.67 0.34 0.93 0.30 0.00 0.49 0.00 0.00 0.00 0.35 0.29 K jcn_only_AD by,RI_chr3R_5373093_5377292 chr3R - chr3R_5354681_5356461 chr3R_5354681_5354979 chr3R_5354623_5354680;chr3R_5356462_5358734 0.00 0.00 0.00 0.00 2.70 NA 0.00 2.00 1.19 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 4.55 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 2.94 0.00 4.35 NA 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 5.71 2.78 0.00 0.00 0.00 2.70 0.00 0.00 NA 3.70 0.00 3.70 NA NA K jcn_only_AD nes chr3L - chr3L_19253331_19253632;chr3L_19253331_19253636;chr3L_19253331_19253609;chr3L_19253331_19253676;chr3L_19253331_19253648;chr3L_19253331_19253764 chr3L_19253331_19253745 chr3L_19253215_19253330;chr3L_19253765_19253779 10.36 10.71 11.90 11.63 11.43 18.18 9.09 19.23 14.00 6.25 NA 14.00 17.39 5.88 19.05 6.25 NA 20.83 9.09 17.74 13.64 5.00 4.08 0.00 17.24 12.00 12.90 4.76 2.27 0.00 13.95 12.50 3.12 23.33 0.00 0.00 12.90 10.00 0.00 6.90 14.81 14.29 16.67 2.56 3.70 2.33 8.00 0.00 12.00 NA 5.26 11.76 0.00 0.00 14.06 25.00 5.00 3.23 N jcn_only_AA CG9934 chr2L - chr2L_13013870_13013948 chr2L_13013884_13013948 chr2L_13013949_13014291;chr2L_13013318_13013869 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 89.02 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Men,I_chr3R_8540855_8541101 chr3R - chr3R_8539870_8539925 chr3R_8539869_8539870;chr3R_8539925_8539926 chr3R_8538818_8539869;chr3R_8539926_8540854 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.21 0.00 0.25 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.22 0.00 0.34 0.00 0.45 0.00 0.00 0.00 0.85 1.08 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.37 0.62 0.00 0.00 0.00 0.00 0.96 0.49 0.45 0.21 0.00 0.56 0.00 0.00 0.00 0.19 0.00 K intron_retention Nhe3,I_chr2L_6680525_6680670 chr2L - chr2L_6681773_6681942 chr2L_6681772_6681773;chr2L_6681942_6681943 chr2L_6681464_6681772;chr2L_6681943_6682037 0.00 NA 0.00 7.41 NA 4.55 12.00 6.67 0.00 NA 0.00 4.17 0.00 0.00 0.00 9.52 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 5.00 NA 8.00 NA 0.00 0.00 4.55 13.33 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.82 NA 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 NA 0.00 10.53 0.00 0.00 0.00 K alternative_acceptor CG1969 chr3R + chr3R_25567092_25567489 chr3R_25567092_25567419 chr3R_25566873_25567091;chr3R_25567490_25567631 85.71 88.89 75.00 80.00 NA 85.71 85.71 85.71 93.33 NA NA 80.00 87.50 85.71 NA 85.71 87.50 NA 72.73 88.89 NA 30.77 81.82 77.78 NA NA 90.91 NA NA 66.67 85.71 NA NA 90.91 83.33 36.36 88.89 55.56 NA 90.91 62.50 90.91 87.50 63.64 NA 76.47 71.43 87.50 85.71 85.71 88.89 83.33 68.75 90.91 100.00 90.00 81.82 78.57 K alternative_donor Glt chr2L + chr2L_8672761_8673108 chr2L_8672793_8673108 chr2L_8673109_8674369;chr2L_8672747_8672760 90.00 NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor F_chr3R_19799277_19802225,CG5902,Rab7 chr3R + chr3R_19812438_19812753 chr3R_19812669_19812753 chr3R_19812754_19812932;chr3R_19812343_19812437 28.57 31.25 26.98 30.17 21.15 25.00 31.82 18.37 16.90 25.00 19.30 28.44 22.45 20.97 27.27 15.31 19.67 57.14 19.35 22.73 26.67 35.56 25.00 28.75 29.51 27.94 35.19 35.71 47.37 38.46 34.48 40.00 62.50 26.47 40.62 37.14 19.32 28.57 20.99 42.37 64.00 24.56 23.08 26.09 37.50 42.22 29.23 75.76 22.88 26.56 30.43 32.08 33.33 29.41 27.14 40.00 20.83 60.00 K cassette PyK,CG7069,CG18596,I_chr3R_18203637_18203690,I_chr3R_18209085_18209133 chr3R + chr3R_18193391_18196499 chr3R_18193391_18194501;chr3R_18194588_18196499 chr3R_18194502_18194587 chr3R_18193322_18193390;chr3R_18196500_18197889 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.22 0.00 0.49 0.00 0.19 0.00 0.22 0.00 0.00 0.35 0.00 0.29 0.00 0.52 0.00 0.00 0.00 0.15 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.27 0.00 0.00 K cassette R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8088454_8105691 chr2L_8088454_8089490;chr2L_8089737_8105691 chr2L_8089491_8089736 chr2L_8088448_8088453;chr2L_8105692_8105782 100.00 100.00 100.00 99.86 100.00 100.00 100.00 100.00 99.89 100.00 100.00 99.86 99.77 100.00 99.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.71 100.00 100.00 100.00 99.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.39 100.00 99.41 99.77 99.88 100.00 100.00 100.00 100.00 99.22 100.00 100.00 100.00 100.00 K intron_retention CG17883,I_chr2R_560147_560511,I_chr2R_560547_560618 chr2R + chr2R_560565_560618 chr2R_560564_560565;chr2R_560618_560619 chr2R_560512_560564;chr2R_560619_560642 53.85 NA NA NA NA NA 45.45 33.33 61.54 NA NA 53.85 NA 64.71 NA 55.56 36.36 NA 54.55 19.05 NA NA 77.78 NA NA NA NA NA NA NA NA NA NA 52.38 NA NA NA NA NA 41.67 NA 70.00 54.55 NA NA 31.25 NA NA 50.00 66.67 50.00 NA NA NA NA 60.00 61.54 46.15 K alternative_acceptor R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083458_8089184;chr2L_8083458_8089356 chr2L_8083458_8089393 chr2L_8083444_8083457;chr2L_8089394_8089493 0.00 NA NA NA NA NA NA 3.85 NA 0.00 NA 0.00 NA 7.69 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 10.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA K alternative_acceptor SNF1A chrX + chrX_1269789_1269902 chrX_1269789_1269894 chrX_1269580_1269788;chrX_1269903_1270220 100.00 92.86 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 95.00 100.00 100.00 100.00 97.30 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG6406 chr2R - chr2R_13624539_13624600 chr2R_13624539_13624594 chr2R_13623844_13624538;chr2R_13624601_13624729 29.43 21.05 37.50 35.48 46.15 43.75 37.50 38.46 37.14 28.00 28.57 26.53 15.79 25.00 39.13 37.50 NA 41.38 25.00 29.23 47.06 34.09 23.81 26.32 23.53 36.00 28.57 32.65 27.78 35.71 29.17 41.67 34.21 28.57 33.33 35.90 25.81 20.51 26.67 29.63 29.17 28.57 35.71 34.00 28.00 30.00 19.05 24.32 38.46 34.38 27.91 15.00 23.08 32.43 29.17 28.85 30.00 46.43 K alternative_donor dwg,RI_chrX_2622297_2622355,RI_chrX_2622297_2622430,RI_chrX_2622435_2622577,RI_chrX_2627170_2627263 chrX + chrX_2622297_2622577 chrX_2622435_2622577 chrX_2622578_2622677;chrX_2622197_2622296 5.71 3.03 3.23 7.41 10.53 6.90 14.29 5.00 10.87 4.76 0.00 3.57 5.88 0.00 3.23 10.81 15.00 11.11 6.67 9.09 0.00 36.36 4.76 3.70 3.85 4.76 5.71 11.76 2.94 3.45 10.26 7.69 5.71 5.71 4.76 14.29 2.56 0.00 7.41 6.12 10.00 6.00 0.00 3.23 0.00 4.00 9.68 2.13 8.00 9.09 9.52 8.33 2.94 9.09 10.34 3.33 0.00 1.92 K alternative_donor CG6049 chr3L - chr3L_21418646_21425954 chr3L_21418646_21425939 chr3L_21417818_21418645;chr3L_21425955_21426213 21.74 21.74 22.22 29.55 20.00 29.41 17.31 23.68 30.91 NA 16.67 21.82 27.27 20.00 28.57 21.05 14.29 23.08 15.15 20.34 15.00 35.71 20.00 17.14 19.05 22.22 23.08 26.32 46.15 11.11 21.21 36.36 16.67 20.00 16.00 15.38 21.43 25.00 23.81 14.29 NA 18.87 25.00 23.33 25.00 23.33 12.50 38.89 23.08 13.04 23.33 14.29 36.36 20.00 25.00 12.50 20.00 28.00 K alternative_acceptor CG3419 chr2R + chr2R_20301935_20302017;chr2R_20301935_20301994 chr2R_20301935_20301990 chr2R_20299701_20301934;chr2R_20302018_20302306 6.46 NA NA NA NA NA NA 6.25 6.67 NA NA 7.14 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Lis-1 chr2R + chr2R_12070420_12070487 chr2R_12070419_12070420;chr2R_12070487_12070488 chr2R_12070242_12070419;chr2R_12070488_12070623 0.00 0.00 0.00 1.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.21 2.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mRpL22 chrX + chrX_16678665_16678778 chrX_16678664_16678665;chrX_16678778_16678779 chrX_16678451_16678664;chrX_16678779_16679127 1.56 0.00 3.70 5.26 0.00 1.45 5.88 1.19 1.76 3.64 1.85 2.67 2.27 0.00 4.21 1.56 5.08 0.00 0.00 1.45 0.00 3.03 2.04 1.42 1.56 0.00 5.80 3.28 0.00 0.00 2.82 1.10 3.54 4.21 0.00 2.04 1.81 0.88 1.85 0.00 2.27 1.84 0.00 0.00 0.00 0.00 2.63 1.57 1.64 1.90 2.11 0.00 0.00 0.00 0.00 1.89 0.93 0.00 K multi_cassette spz chr3R - chr3R_22892388_22894865 chr3R_22892388_22892450;chr3R_22892607_22892843;chr3R_22892922_22893079;chr3R_22893218_22894865 chr3R_22892451_22892606;chr3R_22892844_22892921;chr3R_22893080_22893217 chr3R_22892330_22892387;chr3R_22894866_22895053 28.09 27.87 42.70 13.24 21.74 27.38 18.29 27.07 29.82 18.31 56.86 34.97 50.63 32.00 30.10 38.13 32.58 33.75 34.48 37.79 37.74 23.38 18.44 20.28 24.36 43.33 25.00 16.67 11.54 27.03 33.33 28.09 29.55 34.00 38.03 32.65 19.13 18.60 21.14 38.13 32.73 27.75 31.40 31.18 12.88 28.26 24.07 28.87 31.25 25.64 29.09 26.03 14.29 23.66 34.51 22.43 15.46 24.10 N cassette mth chr3L - chr3L_345886_346814 chr3L_345886_346102;chr3L_346339_346814 chr3L_346103_346338 chr3L_345375_345885;chr3L_346815_346822 85.71 NA 88.89 87.50 NA 85.71 95.45 66.67 73.08 NA 100.00 84.62 66.67 80.00 75.00 94.74 66.67 85.71 80.00 92.86 83.33 100.00 73.33 85.71 80.00 87.50 90.00 NA NA 87.50 85.71 100.00 100.00 80.95 83.33 83.33 NA 83.33 100.00 86.67 85.71 92.31 66.67 62.50 NA 90.00 NA 92.86 80.95 100.00 66.67 87.50 NA 80.00 76.92 80.00 NA 87.50 K intron_retention Shawn_Tyler,RpS10b chrX + chrX_19492239_19492465 chrX_19492238_19492239;chrX_19492465_19492466 chrX_19492182_19492238;chrX_19492466_19493111 0.04 0.06 0.06 0.02 0.02 0.07 0.05 0.05 0.05 0.09 0.00 0.05 0.03 0.08 0.03 0.04 0.02 0.05 0.03 0.04 0.02 0.01 0.04 0.03 0.07 0.02 0.08 0.14 0.06 0.07 0.02 0.05 0.07 0.05 0.06 0.00 0.01 0.04 0.04 0.08 0.04 0.03 0.02 0.00 0.01 0.05 0.04 0.03 0.07 0.07 0.11 0.04 0.07 0.06 0.03 0.03 0.05 0.02 K intron_retention Ykt6 chrX + chrX_7814834_7814922 chrX_7814833_7814834;chrX_7814922_7814923 chrX_7814344_7814833;chrX_7814923_7815988 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.74 2.68 4.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 K alternative_acceptor Pcf11,RI_chr2R_10753287_10754988 chr2R - chr2R_10753287_10754988;chr2R_10753557_10754988;chr2R_10753581_10754988;chr2R_10753239_10754988 chr2R_10753272_10754988 chr2R_10754989_10755088;chr2R_10753187_10753238 21.24 23.08 10.53 25.00 12.50 20.83 18.18 22.73 22.86 20.00 20.00 21.43 18.18 20.00 26.67 14.29 18.75 16.67 10.53 23.81 27.27 22.58 22.22 10.00 20.00 25.00 24.00 25.00 15.00 26.67 21.05 10.00 19.05 20.00 40.00 18.75 14.63 12.50 24.00 26.47 50.00 20.59 16.67 25.00 18.18 28.57 23.08 23.53 22.58 20.00 25.93 30.00 25.00 0.00 23.53 12.50 NA 25.00 K jcn_only_AA CG40439,I_chr2L_22690863_22690905 chr2L - chr2L_22690855_22690905;chr2L_22690863_22690905 chr2L_22690836_22690905 chr2L_22690906_22691005;chr2L_22690763_22690835 92.75 98.08 94.12 89.89 96.67 94.34 89.66 94.61 94.64 80.95 95.00 93.33 84.71 90.00 81.08 89.80 95.38 97.73 90.91 90.52 90.91 85.71 93.33 96.30 94.59 90.32 98.31 96.15 86.36 96.30 93.65 82.93 NA 88.24 92.31 95.65 80.77 NA NA 91.49 92.31 90.00 88.24 87.50 NA 93.22 93.55 96.97 92.65 96.30 97.62 92.86 100.00 NA 92.06 84.62 95.45 90.00 K alternative_donor siz chr3L + chr3L_21067150_21067315 chr3L_21067152_21067315 chr3L_21067316_21068448;chr3L_21066314_21067149 100.00 NA NA NA NA NA NA 100.00 100.00 90.91 NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 88.89 NA 100.00 100.00 100.00 NA NA NA NA 100.00 NA 100.00 N jcn_only_AD CG34325,I_chrX_16609323_16614744,I_chrX_16613170_16614744 chrX - chrX_16610696_16614744 chrX_16610696_16610788 chrX_16610471_16610695;chrX_16614745_16614802 86.36 NA NA NA NA NA 80.95 NA 86.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA 95.24 87.50 NA NA NA NA 95.45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 70.83 NA N alternative_donor CG6293,Bruce chr3R - chr3R_6136241_6137129;chr3R_6136241_6137183 chr3R_6136241_6136995 chr3R_6135621_6136240;chr3R_6137184_6137328 0.00 0.27 0.17 0.12 0.39 0.00 1.19 0.12 0.13 0.00 0.28 0.53 1.74 0.23 0.00 0.00 0.00 0.60 0.18 0.38 0.00 0.19 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.17 0.00 0.12 0.25 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.27 0.00 0.24 0.17 0.00 0.13 0.11 0.00 0.23 0.00 0.00 0.41 0.37 0.00 0.00 0.00 K intron_retention chic,RI_chr2L_5976783_5980950,I_chr2L_5979705_5979818,I_chr2L_5979705_5979941,RI_chr2L_5979705_5979951,I_chr2L_5979705_5979953,I_chr2L_5979705_5980025,I_chr2L_5979705_5980213,I_chr2L_5979705_5980370,I_chr2L_5979705_5980558,I_chr2L_5979705_5980632,I_chr2L_5979705_5980639,RI_chr2L_5979705_5980734 chr2L - chr2L_5979705_5979959 chr2L_5979704_5979705;chr2L_5979959_5979960 chr2L_5979605_5979704;chr2L_5979960_5980041 94.78 92.38 94.37 96.80 93.59 94.12 96.00 94.08 94.12 95.89 98.92 95.44 95.05 96.41 90.06 93.94 95.00 94.52 91.49 94.78 93.52 95.92 95.63 93.33 99.10 96.69 96.12 95.70 90.16 98.21 95.49 97.37 92.31 94.32 92.23 89.91 96.25 97.89 89.11 97.33 94.98 94.40 93.00 94.63 96.05 95.19 92.11 96.41 95.40 94.93 93.18 94.70 93.20 91.35 94.52 92.95 95.03 96.30 K cassette Ranbp16,I_chrX_15826655_15827277 chrX - chrX_15822964_15823373 chrX_15822964_15823205;chrX_15823292_15823373 chrX_15823206_15823291 chrX_15822907_15822963;chrX_15823374_15823435 5.26 7.69 4.55 5.56 NA 6.67 5.56 2.86 5.26 NA 4.55 4.35 0.00 0.00 7.41 2.63 NA 6.25 0.00 3.12 6.67 14.29 7.14 4.76 NA 5.26 2.94 NA 0.00 NA 9.09 7.69 NA 7.14 4.35 NA 7.14 5.56 6.25 5.71 NA 3.23 NA 3.70 5.00 3.12 4.17 5.56 2.94 9.68 7.41 NA 5.26 8.00 0.00 3.85 6.90 6.25 K intron_retention Tre1,I_chrX_5569518_5570588 chrX - chrX_5569291_5569362 chrX_5569290_5569291;chrX_5569362_5569363 chrX_5569145_5569290;chrX_5569363_5569517 0.48 1.01 0.00 0.82 0.00 0.00 0.99 0.82 0.88 0.00 0.79 0.80 0.00 0.00 0.00 1.17 0.75 0.00 0.00 0.23 0.00 1.11 0.29 0.52 0.85 0.74 2.78 4.27 2.63 1.30 0.00 0.00 0.50 0.69 0.00 0.72 1.13 0.31 0.00 1.00 1.38 0.00 0.00 0.37 0.00 0.54 0.00 0.29 0.29 0.00 0.72 0.50 1.12 0.00 0.00 0.00 0.91 0.48 K jcn_only_AA CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15766003_15766062;chrX_15766003_15766047 chrX_15766003_15766068 chrX_15765903_15766002;chrX_15766069_15766147 3.03 0.00 0.00 4.55 4.35 NA 1.75 6.15 0.00 NA 8.33 3.64 3.23 4.00 3.03 2.33 4.17 NA 7.50 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA 5.41 NA NA 7.41 NA NA NA NA NA 0.00 NA 1.61 3.03 0.00 NA NA NA NA 5.00 NA 0.00 NA NA NA 2.04 NA NA NA K jcn_only_AA CG33111,I_chr3R_19633752_19633821,eIF4G2 chr3R - chr3R_19633752_19643948 chr3R_19642753_19643948 chr3R_19643949_19644333 91.30 91.30 94.44 63.49 100.00 82.35 84.09 91.67 93.83 100.00 91.30 95.00 85.71 93.55 88.37 94.23 92.31 100.00 90.91 82.81 100.00 100.00 87.50 85.00 NA 69.23 90.62 100.00 92.59 NA 76.92 NA NA 92.11 81.25 92.59 92.86 90.48 100.00 91.30 NA 89.71 88.00 90.62 NA NA NA 83.33 91.89 NA 86.21 90.48 NA NA 93.62 NA NA 62.96 K intron_retention CG6330 chr3R - chr3R_22776291_22776359 chr3R_22776290_22776291;chr3R_22776359_22776360 chr3R_22775404_22776290;chr3R_22776360_22776731 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.25 3.30 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.61 0.00 0.00 0.00 0.00 1.82 0.00 0.00 2.63 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor CG31431 chr3R + chr3R_17697863_17698131;chr3R_17697863_17697989 chr3R_17697863_17697938 chr3R_17697704_17697862;chr3R_17698132_17698247 2.76 3.09 2.19 2.78 3.06 1.82 13.43 3.66 2.59 2.78 2.99 2.94 7.20 3.42 2.56 2.62 3.01 3.01 3.45 2.23 2.29 4.42 2.21 2.90 1.98 4.24 2.41 4.82 1.52 1.65 2.76 2.70 1.57 2.56 3.77 2.63 2.70 2.38 0.75 3.66 0.92 2.66 3.76 2.60 3.57 3.33 1.33 3.88 1.41 1.04 1.82 3.61 1.16 2.86 2.89 3.61 1.66 3.81 K alternative_donor SdhA,I_chr2R_15281949_15282989,I_chr2R_15283283_15283411 chr2R - chr2R_15281949_15283191 chr2R_15281949_15282989 chr2R_15281849_15281948;chr2R_15283192_15283282 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention E2f2 chr2L - chr2L_21155682_21155743 chr2L_21155681_21155682;chr2L_21155743_21155744 chr2L_21155572_21155681;chr2L_21155744_21156328 2.08 2.50 0.00 4.08 1.72 0.00 4.55 2.04 2.08 0.00 0.00 1.72 0.00 3.77 1.16 1.09 0.00 0.00 0.00 3.17 0.00 4.44 4.30 1.22 12.73 3.92 2.35 7.55 7.50 1.37 3.33 3.77 3.70 5.21 0.00 12.24 2.88 0.00 0.00 5.00 3.12 2.40 0.00 2.78 4.08 0.00 0.00 2.56 1.57 2.94 4.95 2.08 0.00 3.28 1.49 6.35 0.00 0.00 K alternative_donor CG11247,I_chr3L_21718596_21718659 chr3L - chr3L_21718596_21718659 chr3L_21718596_21718654 chr3L_21718496_21718595;chr3L_21718660_21718759 100.00 100.00 100.00 95.00 100.00 94.44 100.00 96.55 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 93.33 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 91.67 100.00 94.12 100.00 100.00 90.91 100.00 95.45 100.00 100.00 94.74 91.67 97.22 92.86 100.00 100.00 95.45 100.00 95.65 100.00 100.00 93.33 90.00 92.31 100.00 100.00 100.00 100.00 95.83 K intron_retention Mi-2 chr3L - chr3L_19881579_19881637 chr3L_19881578_19881579;chr3L_19881637_19881638 chr3L_19881332_19881578;chr3L_19881638_19881714 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 12.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 9.52 NA NA NA NA 0.00 0.00 6.67 NA NA NA NA NA 0.00 NA NA NA K jcn_only_AD CG32000,RI_chr4_153025_153811,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_153858_154213 chr4_153862_154213 chr4_154214_154339;chr4_153815_153857 35.64 NA 35.00 NA NA NA 34.21 35.14 40.00 NA NA 35.56 NA 52.38 NA 41.51 NA NA 35.00 32.35 NA NA 29.63 NA NA NA 30.00 NA NA NA NA NA NA 37.50 35.71 25.00 NA NA NA 42.86 NA 25.00 NA 40.91 NA NA NA 40.74 54.55 NA 50.00 NA NA NA NA NA NA NA K cassette Myo61F,mtacp1,I_chr3L_1330291_1330865,I_chr3L_1330291_1331279,RI_chr3L_1330929_1331041,l(3)02640 chr3L + chr3L_1330291_1331041 chr3L_1330291_1330865;chr3L_1330929_1331041 chr3L_1330866_1330928 chr3L_1330191_1330290;chr3L_1331042_1331054 0.61 0.28 0.65 2.13 0.00 0.00 1.77 1.03 0.55 0.58 0.53 0.72 1.67 1.17 0.93 0.86 0.00 0.38 0.47 0.92 0.41 1.55 0.53 1.13 0.56 0.98 0.71 0.65 2.46 0.90 0.84 0.87 0.46 0.55 0.63 0.58 0.66 0.29 0.96 0.60 0.91 0.19 1.10 0.30 0.60 0.87 0.45 0.63 0.71 0.38 0.61 0.00 0.34 1.11 0.39 0.28 0.49 0.42 K jcn_only_AD CG4165,I_chrX_5317784_5317881,I_chrX_5321743_5321838 chrX + chrX_5316160_5316612;chrX_5316313_5316612;chrX_5316300_5316612 chrX_5315965_5316612 chrX_5316613_5317050;chrX_5315939_5315964 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA 3.85 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA NA 0.00 NA NA 3.33 0.00 0.00 0.00 0.00 NA 3.70 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention trol,I_chrX_2391522_2395659,E_chrX_2418227_2439167 chrX - chrX_2438796_2439415 chrX_2438795_2438796;chrX_2439415_2439416 chrX_2438498_2438795;chrX_2439416_2439423 0.00 NA NA 0.00 NA NA NA 9.52 4.65 0.00 NA 9.09 NA NA NA NA NA NA NA 4.44 NA NA 11.11 0.00 NA NA NA NA 4.17 0.00 NA NA 0.00 0.00 NA NA 7.41 NA NA 0.00 NA 8.82 NA 0.00 NA NA NA 0.00 7.41 NA NA NA 0.00 NA NA NA NA 0.00 K intron_retention CG1814,Updo chr2R + chr2R_5468923_5468990 chr2R_5468922_5468923;chr2R_5468990_5468991 chr2R_5468771_5468922;chr2R_5468991_5469352 0.00 0.00 0.00 0.00 0.00 0.00 2.78 2.70 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpS8,I_chr3R_25688028_25688459,E_chr3R_25688028_25688504,I_chr3R_25688028_25688507,I_chr3R_25688028_25688662,snoRNA:Or-CD8,F_chr3R_25696884_25696960 chr3R + chr3R_25688028_25688506 chr3R_25688027_25688028;chr3R_25688506_25688507 chr3R_25687928_25688027;chr3R_25688507_25688559 0.03 0.02 0.07 0.05 0.04 0.03 0.05 0.08 0.03 0.03 0.03 0.03 0.03 0.00 0.03 0.03 0.02 0.03 0.04 0.05 0.02 0.02 0.03 0.03 0.02 0.05 0.07 0.21 0.03 0.04 0.03 0.04 0.04 0.05 0.03 0.01 0.04 0.02 0.02 0.04 0.03 0.04 0.06 0.03 0.01 0.02 0.02 0.02 0.05 0.02 0.02 0.03 0.02 0.03 0.05 0.02 0.01 0.02 K alternative_acceptor Mkrn1 chr3L - chr3L_21526279_21526666 chr3L_21526287_21526666 chr3L_21526667_21526778;chr3L_21525439_21526278 100.00 100.00 100.00 100.00 90.91 100.00 96.55 97.22 97.06 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 96.77 100.00 100.00 92.86 100.00 94.12 81.82 94.12 85.00 86.67 94.74 100.00 NA 90.91 100.00 100.00 100.00 96.67 96.00 100.00 96.00 90.00 100.00 100.00 97.06 100.00 94.12 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 92.86 K alternative_donor CG15881,RI_chr3L_19799338_19799394,RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19799338_19799405;chr3L_19798419_19799405 chr3L_19798903_19799405 chr3L_19799406_19799494;chr3L_19798405_19798418 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 9.09 5.26 0.00 0.00 11.11 0.00 28.57 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817 chr2R + chr2R_15329995_15330122 chr2R_15329995_15330086 chr2R_15329948_15329994;chr2R_15330123_15330245 0.11 0.05 0.70 0.06 0.00 0.35 0.74 0.00 0.06 0.11 0.00 0.08 0.49 0.20 0.66 0.15 0.95 0.99 1.82 0.05 0.44 0.08 0.05 0.00 0.33 2.91 0.00 0.11 0.18 0.09 0.79 0.22 0.00 0.04 0.14 0.69 0.00 0.14 0.05 0.12 0.15 0.10 0.30 0.04 0.05 0.07 0.13 0.11 0.18 0.11 0.07 0.07 0.05 0.10 0.23 0.14 0.02 0.03 K intron_retention CG11063 chrX - chrX_13721543_13721611 chrX_13721542_13721543;chrX_13721611_13721612 chrX_13721373_13721542;chrX_13721612_13721696 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 1.87 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 2.35 1.20 0.00 0.00 0.90 0.00 2.22 0.00 0.55 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor CG8444,Vps16A chr3R + chr3R_5087066_5087342 chr3R_5087066_5087327 chr3R_5086713_5087065;chr3R_5087343_5088417 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG30339,CG12926,I_chr2R_5496948_5497550,F_chr2R_5549824_5554869 chr2R - chr2R_5496543_5496600 chr2R_5496542_5496543;chr2R_5496600_5496601 chr2R_5496170_5496542;chr2R_5496601_5496910 63.97 NA NA NA NA NA 53.33 NA 55.00 NA NA NA NA NA NA 87.50 NA NA NA 56.25 NA 40.00 80.00 NA NA NA NA NA NA 88.89 64.71 NA 60.00 NA NA NA NA NA NA 88.89 62.50 NA NA 50.00 64.29 80.00 NA 100.00 54.55 NA NA NA NA NA NA NA 77.78 63.64 K intron_retention Ilp6,I_chrX_2226173_2226571 chrX - chrX_2225881_2225958 chrX_2225880_2225881;chrX_2225958_2225959 chrX_2225526_2225880;chrX_2225959_2226172 0.00 1.08 0.00 0.00 0.00 0.00 0.00 7.25 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 2.27 0.95 0.00 0.00 5.26 1.15 4.08 2.60 2.90 0.00 0.00 3.61 3.45 0.00 3.57 0.00 0.00 2.14 2.38 0.00 2.86 2.33 0.00 0.00 0.00 0.00 0.00 2.33 1.71 0.00 0.00 0.00 2.44 0.00 0.00 0.00 1.32 K intron_retention Arp11 chrX - chrX_19539616_19539665 chrX_19539615_19539616;chrX_19539665_19539666 chrX_19538559_19539615;chrX_19539666_19539818 2.78 0.00 0.00 8.89 0.00 0.00 2.78 9.76 6.06 0.00 0.00 9.43 0.00 12.00 3.03 6.52 0.00 0.00 3.70 8.45 0.00 0.00 2.56 6.98 0.00 0.00 5.26 11.54 13.79 0.00 2.86 0.00 2.78 2.22 0.00 7.89 6.45 2.94 7.27 3.64 2.78 9.84 0.00 9.09 0.00 5.88 0.00 0.00 9.23 6.82 2.94 0.00 0.00 6.06 0.00 0.00 4.00 13.04 K intron_retention Aldh-III,I_chr2R_3361118_3361226,I_chr2R_3361349_3361451,I_chr2R_3361349_3361499 chr2R - chr2R_3361349_3361420 chr2R_3361348_3361349;chr2R_3361420_3361421 chr2R_3361249_3361348;chr2R_3361421_3361422 78.46 84.21 74.49 60.48 85.00 79.22 82.65 59.70 77.78 83.33 85.71 69.72 84.62 81.72 70.83 64.24 85.48 76.32 75.00 68.85 76.27 76.47 84.62 84.62 88.37 92.42 81.43 73.33 96.67 76.74 79.59 70.45 78.57 72.85 78.18 93.88 82.76 86.96 72.22 81.52 90.48 79.75 70.27 78.57 73.81 74.55 78.46 77.92 75.82 79.41 88.61 80.43 72.09 65.31 74.76 84.48 73.44 72.31 K intron_retention mth chr3L - chr3L_344870_344922 chr3L_344869_344870;chr3L_344922_344923 chr3L_344803_344869;chr3L_344923_345099 15.81 16.67 7.14 7.69 12.50 28.57 20.00 13.64 9.26 NA 37.93 9.52 28.57 30.00 12.50 19.51 23.08 8.33 15.62 20.00 14.29 31.82 13.04 0.00 NA 13.79 22.22 NA 75.00 NA 16.00 35.71 50.00 18.42 6.67 NA 5.56 NA 15.00 21.05 60.00 10.26 9.09 18.52 39.13 35.71 12.50 66.67 8.89 0.00 0.00 17.65 NA 0.00 0.00 17.65 0.00 21.43 K intron_retention CG8632,CG8646 chr2R + chr2R_8541564_8541615 chr2R_8541563_8541564;chr2R_8541615_8541616 chr2R_8541495_8541563;chr2R_8541616_8541757 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 3.70 5.26 NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 K intron_retention I_chr3R_5338175_5338299,Rlc1 chr3R - chr3R_5340742_5340794 chr3R_5340741_5340742;chr3R_5340794_5340795 chr3R_5340551_5340741;chr3R_5340795_5341072 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 1.37 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD Tsp42Ed chr2R - chr2R_2898360_2899096 chr2R_2898360_2898498 chr2R_2898168_2898359;chr2R_2899097_2899359 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention cnn,I_chr2R_9333096_9336723,I_chr2R_9333096_9336812,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9334834_9336501 chr2R_9334833_9334834;chr2R_9336501_9336502 chr2R_9334744_9334833;chr2R_9336502_9336659 32.14 NA NA 17.65 NA NA 41.38 36.00 28.57 NA NA 37.50 NA NA NA 32.14 NA NA 30.77 29.41 NA 39.13 30.00 NA NA NA 25.00 45.45 54.55 33.33 36.36 NA 20.00 46.15 NA 41.67 25.00 NA NA 38.89 NA 50.00 NA 18.52 NA NA NA 26.67 26.09 NA 10.53 NA NA NA NA NA NA NA N jcn_only_AA MAPk-Ak2,RI_chrX_5655618_5656137,I_chrX_5656715_5657427,I_chrX_5656715_5657893,I_chrX_5656715_5657974 chrX - chrX_5656678_5658141 chrX_5656715_5658141 chrX_5658142_5658214;chrX_5656615_5656677 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG7408 chr3L + chr3L_17872349_17872977;chr3L_17872349_17873076 chr3L_17872349_17873049 chr3L_17872262_17872348;chr3L_17873077_17873164 28.57 NA NA 10.00 NA 40.00 36.36 36.36 8.33 NA NA 28.57 28.57 NA 14.29 23.08 NA 33.33 37.50 0.00 NA NA NA NA NA NA NA NA NA NA 28.57 NA NA 37.50 NA NA NA NA NA NA NA 28.57 NA NA NA NA NA NA 30.00 NA NA NA NA NA NA NA NA NA K intron_retention oho23B,I_chr2L_2856176_2856244,I_chr2L_2856573_2856630,E_chr2L_2856577_2856641,RI_chr2L_2856673_2856772 chr2L + chr2L_2856569_2856630 chr2L_2856568_2856569;chr2L_2856630_2856631 chr2L_2856480_2856568;chr2L_2856631_2856641 91.29 90.54 88.86 59.96 86.84 87.85 92.87 85.78 89.99 95.11 88.32 92.68 89.90 92.31 88.53 93.36 88.42 87.59 90.07 86.96 89.18 95.13 95.72 92.60 97.22 93.51 93.25 92.86 94.17 87.25 91.89 95.09 94.94 88.63 94.32 95.99 93.63 91.79 93.85 94.06 98.56 89.82 89.22 91.29 90.39 93.52 90.24 97.54 90.29 90.29 92.46 93.97 88.00 90.36 88.23 88.32 90.41 96.82 K cassette par-1,I_chr2R_15361473_15366246,I_chr2R_15362147_15365120,F_chr2R_15362147_15365138,I_chr2R_15362147_15365165,RI_chr2R_15363358_15365120,I_chr2R_15363358_15366246,I_chr2R_15365210_15370456 chr2R + chr2R_15361473_15366246 chr2R_15361473_15365120;chr2R_15365210_15366246 chr2R_15365121_15365209 chr2R_15361373_15361472;chr2R_15366247_15366346 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG30115,E_chr2R_14444407_14448590 chr2R - chr2R_14443916_14445307 chr2R_14443915_14443916;chr2R_14445307_14445308 chr2R_14441641_14443915;chr2R_14445308_14445521 10.53 NA NA 8.70 NA NA NA 29.41 12.00 NA NA 8.33 NA NA 7.69 NA 33.33 NA 20.00 25.00 NA 3.12 12.50 7.69 NA 18.75 NA 9.52 0.00 NA 10.53 NA NA 22.22 NA 13.33 5.56 13.33 19.05 2.70 NA 8.33 NA NA 0.00 NA 21.43 4.55 10.53 NA 9.09 NA 15.79 NA NA NA NA 12.50 K cassette CG8818 chr2R - chr2R_8405094_8405341 chr2R_8405094_8405145;chr2R_8405280_8405341 chr2R_8405146_8405279 chr2R_8404760_8405093;chr2R_8405342_8406423 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.27 100.00 98.36 100.00 100.00 98.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.63 100.00 100.00 97.01 100.00 100.00 100.00 99.10 98.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.85 100.00 98.96 100.00 100.00 100.00 98.98 100.00 98.72 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Anxb11,I_chrX_16314152_16314405,I_chrX_16314152_16315813 chrX - chrX_16314152_16316276;chrX_16314152_16316199 chrX_16314152_16316028 chrX_16314083_16314151;chrX_16316277_16316298 21.98 NA NA NA NA NA 38.10 21.74 33.33 NA NA 38.10 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 13.04 NA NA 22.22 NA NA NA NA NA 33.33 NA 21.74 NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA K jcn_only_AD Mnf,RI_chr3L_11108913_11109028,F_chr3L_11109008_11109130 chr3L - chr3L_11108913_11109028 chr3L_11108913_11108989 chr3L_11108908_11108912;chr3L_11109029_11109128 100.00 98.18 100.00 100.00 100.00 100.00 100.00 98.48 100.00 100.00 96.77 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.65 96.72 100.00 98.21 100.00 95.08 98.51 100.00 100.00 100.00 100.00 100.00 98.36 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 98.81 100.00 100.00 100.00 100.00 96.72 100.00 98.33 100.00 K jcn_only_AD unc-104,I_chr2R_12643956_12644305,RI_chr2R_12650846_12659758 chr2R - chr2R_12645908_12646756 chr2R_12645908_12646127 chr2R_12645498_12645907 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA K jcn_only_AA Pitslre chr3L + chr3L_20764709_20766893 chr3L_20764709_20764767 chr3L_20764640_20764708 100.00 NA NA NA NA NA NA NA 95.00 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG32758 chrX - chrX_5617396_5631131 chrX_5617395_5617396;chrX_5631131_5631132 chrX_5617293_5617395;chrX_5631132_5632093 3.81 3.81 8.14 2.41 7.25 6.74 5.21 5.21 6.55 0.00 5.26 9.52 3.64 10.53 6.25 6.67 6.49 5.21 10.47 5.18 7.32 5.52 3.45 2.52 2.15 3.70 1.80 3.12 5.08 3.55 5.10 0.00 3.26 9.09 4.90 1.89 1.69 2.48 2.61 3.33 1.23 5.65 6.06 3.45 0.00 1.94 1.52 3.76 7.74 0.00 4.10 5.06 4.60 3.64 7.14 3.12 0.00 1.57 K intron_retention MB8.chr3R.pasa.66,alpha-Est10,I_chr3R_3314337_3319450 chr3R - chr3R_3314337_3317062 chr3R_3314336_3314337;chr3R_3317062_3317063 chr3R_3314237_3314336;chr3R_3317063_3317412 2.94 NA NA NA NA NA NA 0.00 7.41 5.88 NA 7.69 NA NA NA NA NA NA 7.69 0.00 NA NA 15.38 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 14.29 NA NA 12.50 NA NA NA NA NA NA NA K intron_retention CG5004,E_chrX_17024712_17024996 chrX + chrX_17024712_17024996 chrX_17024711_17024712;chrX_17024996_17024997 chrX_17024674_17024711;chrX_17024997_17025096 46.15 50.00 42.86 50.00 37.93 63.16 64.10 49.06 52.00 30.77 37.93 48.72 47.62 64.29 46.88 50.00 48.15 50.00 48.72 34.62 41.67 21.50 32.00 52.63 64.71 44.00 33.33 39.13 27.27 29.03 38.46 47.83 19.12 46.81 40.91 37.04 30.00 46.15 26.32 29.09 34.29 46.67 58.33 43.33 30.30 50.00 53.33 38.89 42.37 46.88 64.71 52.94 31.58 52.94 48.65 50.00 36.59 30.65 K alternative_acceptor CG14194 chrX + chrX_19088052_19088456;chrX_19088052_19088528 chrX_19088052_19088400 chrX_19087981_19088051;chrX_19088529_19089031 1.59 1.59 0.00 4.76 2.33 0.00 1.45 1.39 1.60 0.00 2.70 1.10 2.13 2.22 3.45 1.69 0.00 0.00 0.00 2.34 4.35 1.15 1.09 3.45 0.00 2.17 0.99 2.13 2.00 0.00 2.13 0.00 0.00 1.39 2.27 3.64 1.77 1.39 2.02 1.23 0.00 1.11 0.00 1.33 2.17 0.00 0.00 4.00 2.47 1.82 1.27 2.38 2.13 3.23 1.92 0.00 4.23 0.00 K intron_retention Nipped-B,I_chr2R_579746_579800,I_chr2R_580989_582555,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_579752_579800 chr2R_579751_579752;chr2R_579800_579801 chr2R_579584_579751;chr2R_579801_579900 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.87 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 4.62 2.38 0.00 0.00 2.15 0.00 0.00 1.69 0.00 0.00 0.00 3.70 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 K alternative_donor Mical,I_chr3R_5834577_5835458,I_chr3R_5843939_5844218,I_chr3R_5847106_5863537,I_chr3R_5863483_5863537,I_chr3R_5863613_5868513 chr3R - chr3R_5840828_5840905 chr3R_5840828_5840896 chr3R_5840712_5840827;chr3R_5840906_5840969 50.00 35.71 35.71 60.87 41.67 NA 55.00 45.83 51.72 77.78 NA 60.87 43.75 50.00 38.46 61.54 NA 100.00 57.14 58.82 50.00 43.33 42.11 50.00 42.86 57.14 50.00 NA 35.00 42.11 55.00 60.00 46.67 47.37 50.00 40.00 69.23 NA 53.33 50.00 66.67 42.86 NA 52.94 NA NA NA 61.11 53.33 NA 47.06 60.00 NA NA 46.15 NA NA 50.00 K jcn_only_AD plexA,RI_chr4_1036247_1047588,RI_chr4_1040642_1047395,RI_chr4_1044307_1046841,RF_chr4_1044307_1047399 chr4 - chr4_1044307_1047588;chr4_1044307_1047399 chr4_1044307_1047395 chr4_1044207_1044306;chr4_1047589_1047625 48.81 NA NA 33.33 NA NA 52.00 38.24 51.79 NA NA 32.43 52.17 47.62 NA 33.85 NA NA 56.00 50.00 NA 13.64 56.00 NA NA NA NA NA NA NA NA NA NA 71.43 NA NA NA NA NA NA NA 62.07 NA NA NA NA NA NA 46.15 NA 45.45 NA NA NA NA NA NA NA K intron_retention Rab7 chr3R + chr3R_19819904_19819967 chr3R_19819903_19819904;chr3R_19819967_19819968 chr3R_19819668_19819903;chr3R_19819968_19820324 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N cassette CG33558,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2816342_2817327;chr2R_2816342_2817753 chr2R_2816342_2816577;chr2R_2816779_2817753,chr2R_2816779_2817327 chr2R_2816578_2816778 chr2R_2816242_2816341;chr2R_2817754_2817762 88.46 86.36 96.67 95.00 58.82 66.67 85.19 84.78 89.80 100.00 96.30 94.59 66.67 85.71 82.50 100.00 85.71 76.00 80.56 82.72 82.76 95.12 92.50 89.01 76.67 80.95 91.80 79.31 90.00 84.88 96.88 89.19 90.00 94.34 87.10 91.94 89.66 85.54 91.73 96.15 72.97 91.36 88.46 97.18 83.17 85.87 93.85 75.71 83.10 94.53 86.67 88.10 93.10 89.16 91.43 93.18 87.50 83.02 K alternative_donor jing,I_chr2R_2505678_2506068 chr2R + chr2R_2501545_2501609;chr2R_2501482_2501609;chr2R_2501388_2501609;chr2R_2501514_2501609 chr2R_2501376_2501609 chr2R_2501610_2503238;chr2R_2501342_2501375 57.14 NA NA NA NA NA NA NA 87.50 NA NA 33.33 NA NA 60.00 57.14 NA NA NA 58.33 NA 54.55 85.71 75.00 NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA 66.67 NA 42.86 NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA 33.33 NA K intron_retention Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19562387_19562453 chr2R_19562386_19562387;chr2R_19562453_19562454 chr2R_19562327_19562386;chr2R_19562454_19562508 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG41099,I_chr3RHet_1688173_1688235,I_chr3RHet_1688505_1705884,RI_chr3RHet_1703294_1705884 chr3RHet - chr3RHet_1688173_1688235 chr3RHet_1688184_1688235 chr3RHet_1688236_1688330;chr3RHet_1688073_1688172 96.30 NA NA 97.67 NA NA 96.88 91.07 96.15 NA NA 100.00 NA 100.00 NA 94.34 NA NA 93.94 100.00 NA NA NA NA NA 96.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 93.88 93.10 NA NA NA NA NA 96.30 NA NA NA NA NA 96.30 NA NA NA K jcn_only_AD CG5938,EI_chr3R_23100734_23100898,RI_chr3R_23101686_23102014 chr3R + chr3R_23100711_23101112 chr3R_23100734_23101112 chr3R_23101113_23101275;chr3R_23100634_23100710 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette Ten-a chrX + chrX_12168274_12179533 chrX_12168274_12170544;chrX_12170652_12179533 chrX_12170545_12170651 chrX_12167974_12168273;chrX_12179534_12180739 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 93.75 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 K intron_retention Nsf2,I_chr3R_9661260_9662283 chr3R - chr3R_9661260_9661498 chr3R_9661259_9661260;chr3R_9661498_9661499 chr3R_9661160_9661259;chr3R_9661499_9662464 0.00 0.00 0.00 5.26 5.00 0.00 1.69 4.44 0.00 0.00 0.00 5.71 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 1.23 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 K multi_cassette lap,I_chr3R_3017854_3019314 chr3R + chr3R_3019411_3024049 chr3R_3019411_3019919;chr3R_3021618_3022015;chr3R_3022116_3024049 chr3R_3019920_3021617;chr3R_3022016_3022115 chr3R_3019315_3019410;chr3R_3024050_3024362 100.00 NA NA 100.00 NA NA 50.00 50.00 66.67 NA NA 50.00 33.33 50.00 NA NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K alternative_donor RpL27,I_chr3R_21510239_21510298,RI_chr3R_21510239_21510441,I_chr3R_21510239_21510464,I_chr3R_21510239_21510656,I_chr3R_21510239_21510726 chr3R - chr3R_21510239_21510464;chr3R_21510239_21510656;chr3R_21510239_21510739;chr3R_21510239_21510680;chr3R_21510239_21510298 chr3R_21510239_21510746 chr3R_21510139_21510238;chr3R_21510747_21510756 75.00 85.71 77.42 86.27 90.32 81.48 55.56 85.53 72.34 76.92 88.89 73.17 69.23 64.29 90.48 59.09 86.21 84.62 85.48 70.21 81.08 75.00 43.75 77.78 75.00 92.00 54.55 53.12 38.78 62.50 92.54 72.73 72.00 83.08 71.43 56.25 74.29 81.25 74.07 76.56 63.64 89.71 87.50 71.88 79.55 63.89 70.37 74.51 82.35 78.57 44.44 65.00 89.86 50.00 91.21 76.92 80.00 73.47 K intron_retention RanBPM chr2R + chr2R_6320709_6320776 chr2R_6320708_6320709;chr2R_6320776_6320777 chr2R_6320544_6320708;chr2R_6320777_6320970 34.52 NA NA 13.33 NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA 10.00 NA 72.55 31.58 33.33 63.64 NA 33.33 NA 62.50 35.71 NA NA 40.00 NA NA 50.00 33.33 NA 27.27 40.00 NA 11.76 NA NA NA NA NA 36.36 5.56 41.67 42.86 NA NA NA NA NA NA NA K jcn_only_AA CG14741 chr3R - chr3R_7900616_7900895;chr3R_7900613_7900895 chr3R_7900593_7900895 chr3R_7900896_7901144;chr3R_7900525_7900592 19.57 24.49 18.52 8.76 NA 27.59 15.58 13.64 13.68 15.15 9.09 26.13 NA 19.57 16.67 18.11 18.03 14.00 15.09 36.11 14.29 20.25 17.70 29.23 10.91 9.76 17.11 NA 11.19 27.27 26.28 27.27 38.99 27.71 26.79 13.71 30.00 27.78 17.33 25.81 25.93 18.52 21.21 17.89 35.62 17.46 15.62 28.67 25.77 NA 14.93 15.79 24.69 25.00 19.70 20.51 28.85 39.69 K intron_retention fru chr3R - chr3R_14243023_14256553 chr3R_14243022_14243023;chr3R_14256553_14256554 chr3R_14241496_14243022;chr3R_14256554_14256686 15.09 11.63 42.86 43.18 16.22 31.03 46.67 39.62 20.24 14.00 42.11 26.51 41.38 33.33 45.45 58.62 47.06 45.16 55.56 36.63 32.00 21.92 12.33 11.43 15.09 40.00 16.07 13.89 16.39 9.23 50.00 5.88 6.42 46.51 12.20 11.63 9.80 6.78 11.34 9.85 7.32 26.83 34.78 7.02 6.25 7.69 9.09 10.28 30.43 12.50 10.00 8.00 7.50 5.88 48.48 8.33 9.52 7.69 K intron_retention Nacalpha,I_chr2R_8648027_8648303 chr2R - chr2R_8648027_8648231 chr2R_8648026_8648027;chr2R_8648231_8648232 chr2R_8647927_8648026;chr2R_8648232_8648256 7.69 3.23 9.52 0.00 NA 7.69 12.00 11.11 7.14 NA 6.25 7.50 0.00 0.00 5.71 4.35 15.00 0.00 0.00 4.55 15.00 NA 10.26 0.00 NA 3.33 13.04 26.67 16.00 0.00 2.78 0.00 NA 8.33 13.33 NA 0.00 3.03 10.53 12.20 20.00 8.70 14.29 0.00 0.00 16.67 15.38 0.00 12.77 15.00 3.85 0.00 20.00 10.71 13.33 12.12 11.76 0.00 K intron_retention CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21275807_21277277 chr2L_21275806_21275807;chr2L_21277277_21277278 chr2L_21275724_21275806;chr2L_21277278_21277305 58.06 43.75 66.67 80.00 NA NA 35.71 67.74 61.11 47.06 NA 65.38 NA 53.33 58.82 69.57 46.15 78.57 59.09 58.06 NA 45.45 70.83 56.25 68.75 NA 62.50 87.50 61.54 50.00 47.83 44.44 35.71 70.97 47.37 34.29 75.00 58.33 52.00 48.39 25.00 52.78 61.11 71.43 54.55 34.29 46.15 38.89 65.52 57.89 61.90 71.43 38.46 68.75 62.50 50.00 64.29 31.25 K intron_retention CG4289 chr3L + chr3L_20772144_20772202 chr3L_20772143_20772144;chr3L_20772202_20772203 chr3L_20771919_20772143;chr3L_20772203_20772505 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.08 0.00 2.78 0.00 0.00 0.00 5.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824086_11824525 chr2R_11824085_11824086;chr2R_11824525_11824526 chr2R_11823989_11824085;chr2R_11824526_11824611 68.75 66.07 82.61 57.48 93.33 78.57 87.10 74.29 66.97 61.29 73.91 92.00 85.19 72.73 76.47 78.79 72.73 76.92 88.00 63.31 61.54 93.48 55.96 60.81 73.08 81.25 68.52 79.71 76.00 73.47 63.64 71.43 78.95 79.49 57.89 62.86 56.60 56.06 62.79 68.42 80.65 68.57 80.95 67.19 74.44 64.52 58.33 70.37 68.75 58.21 66.67 54.35 49.12 55.36 73.17 52.54 55.70 59.62 K intron_retention CG14401,RI_chr2L_20870192_20870512 chr2L + chr2L_20870761_20870831 chr2L_20870760_20870761;chr2L_20870831_20870832 chr2L_20870700_20870760;chr2L_20870832_20870900 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG18643,F_chr3R_7256294_7256363 chr3R + chr3R_7255993_7256060 chr3R_7255997_7256060 chr3R_7256061_7256293;chr3R_7255963_7255992 10.34 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.34 NA NA NA 20.00 NA NA NA NA 6.25 K jcn_only_AA tko,I_chrX_2363445_2363896 chrX - chrX_2336766_2337766 chrX_2337699_2337766 chrX_2337767_2337981;chrX_2336347_2336765 0.00 0.00 0.00 0.00 0.00 0.00 4.17 1.54 0.00 0.00 0.00 3.96 0.00 0.00 1.39 0.00 0.00 1.45 0.00 1.46 0.00 0.00 0.00 1.12 0.00 1.89 0.00 0.00 0.00 0.00 1.43 1.72 3.64 0.00 2.04 0.00 0.97 0.00 1.05 1.10 2.13 0.00 2.17 0.00 1.22 1.00 0.00 2.38 0.00 0.00 1.10 2.44 0.00 0.89 1.28 0.00 0.48 0.00 K jcn_only_AD CG5757,E_chr2R_13981576_13981669,RI_chr2R_13982037_13982093,RI_chr2R_13982244_13982295 chr2R - chr2R_13982037_13982093 chr2R_13982037_13982088 chr2R_13981970_13982036;chr2R_13982094_13982153 97.67 100.00 97.44 92.00 NA 100.00 96.00 95.83 97.30 100.00 96.00 100.00 100.00 97.50 97.87 97.78 NA 96.55 96.15 98.39 100.00 NA 100.00 100.00 100.00 95.83 100.00 NA 100.00 100.00 88.37 93.88 96.83 93.44 100.00 97.67 100.00 96.97 94.55 97.92 100.00 96.61 100.00 97.67 96.43 96.00 97.62 94.00 92.96 98.25 100.00 100.00 100.00 100.00 93.10 98.18 97.33 97.42 K jcn_only_AD skpA chrX + chrX_550433_551131;chrX_550818_551131;chrX_550638_551131;chrX_550774_551131;chrX_550523_551131;chrX_550654_551131 chrX_550498_551131 chrX_551132_551937;chrX_550426_550432 0.00 0.00 0.00 0.40 0.66 0.00 0.00 0.35 0.00 0.00 0.60 0.40 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.51 0.00 1.14 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.75 0.00 0.35 0.00 0.50 0.00 0.00 0.00 0.00 0.38 0.00 0.49 0.00 0.00 0.00 0.50 0.45 0.00 0.00 K alternative_acceptor CG9153,Myo61F chr3L + chr3L_1316676_1316737 chr3L_1316676_1316734 chr3L_1316385_1316675;chr3L_1316738_1317333 20.97 27.27 17.31 20.21 25.00 15.38 22.89 24.71 21.05 17.24 33.33 26.14 24.56 25.64 20.97 23.81 19.30 22.73 25.42 19.70 25.64 17.78 19.59 16.87 18.87 25.00 19.28 8.82 21.21 28.30 17.57 13.79 20.00 24.10 21.62 20.00 22.73 22.22 24.69 21.33 20.00 21.43 28.21 21.92 25.00 19.61 22.08 12.50 19.63 19.35 17.24 20.93 19.15 18.87 22.22 13.24 19.75 17.65 K intron_retention CG17912,I_chr2L_16749189_16749266 chr2L + chr2L_16744068_16744123 chr2L_16744067_16744068;chr2L_16744123_16744124 chr2L_16743760_16744067;chr2L_16744124_16744385 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.21 3.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chr2R_3817895_3817951,rnh1,RI_chr2R_3819348_3819403 chr2R - chr2R_3819352_3819403 chr2R_3819351_3819352;chr2R_3819403_3819404 chr2R_3819116_3819351;chr2R_3819404_3819460 0.00 0.00 0.00 4.65 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.11 5.26 0.00 0.00 0.00 0.00 2.78 2.99 0.00 2.50 0.00 0.00 3.64 2.27 0.00 0.00 0.00 1.89 0.00 0.00 8.51 2.74 0.00 2.41 1.48 4.85 0.00 0.00 0.00 0.00 2.13 0.00 1.16 0.00 1.37 0.00 0.00 0.00 3.28 1.59 1.27 0.00 0.87 K alternative_donor Nopp140,I_chr3L_21828330_21828566,I_chr3L_21828986_21829082 chr3L + chr3L_21827177_21827368 chr3L_21827321_21827368 chr3L_21827369_21827458;chr3L_21826280_21827176 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG11198,I_chr2R_3873270_3874570,I_chr2R_3873284_3874453,I_chr2R_3873287_3874570 chr2R - chr2R_3872957_3877020 chr2R_3872956_3872957;chr2R_3877020_3877021 chr2R_3872571_3872956;chr2R_3877021_3877237 7.90 7.25 6.98 7.48 2.67 6.49 5.92 5.15 6.14 9.80 8.11 5.49 5.13 9.64 5.77 8.73 5.56 11.63 12.50 11.00 9.59 8.33 12.31 12.82 9.62 6.80 8.70 8.70 5.26 2.56 8.25 5.71 4.76 6.58 4.65 6.90 5.49 12.82 9.09 4.66 7.69 5.45 6.94 10.61 13.95 9.43 17.39 1.69 5.59 26.32 10.17 12.12 14.81 NA 10.53 17.65 23.81 6.82 K alternative_donor ERp60,I_chr2R_7776895_7777652,I_chr2R_7776895_7778171,RI_chr2R_7790917_7791377 chr2R - chr2R_7776895_7778175 chr2R_7776895_7778171 chr2R_7776795_7776894;chr2R_7778176_7778271 0.04 0.08 0.07 0.05 0.00 0.00 0.08 0.06 0.00 0.11 0.00 0.05 0.00 0.00 0.06 0.00 0.00 0.08 0.00 0.03 0.00 0.28 0.07 0.23 0.00 0.00 0.27 0.22 0.09 0.00 0.15 0.00 0.04 0.00 0.00 0.10 0.12 0.00 0.22 0.00 0.08 0.04 0.10 0.00 0.00 0.15 0.07 0.08 0.00 0.00 0.19 0.00 0.00 0.00 0.07 0.00 0.06 0.05 K intron_retention Rho1,I_chr2R_11990455_11992537,RI_chr2R_11991687_11992537 chr2R + chr2R_11990362_11991115 chr2R_11990361_11990362;chr2R_11991115_11991116 chr2R_11990355_11990361;chr2R_11991116_11991279 100.00 100.00 100.00 99.82 100.00 100.00 100.00 99.84 100.00 100.00 100.00 99.65 99.66 99.74 99.38 100.00 100.00 100.00 99.73 100.00 100.00 99.47 100.00 100.00 100.00 100.00 99.49 100.00 100.00 100.00 100.00 100.00 99.34 100.00 100.00 100.00 99.59 99.53 100.00 100.00 100.00 99.84 99.64 100.00 99.43 99.68 99.71 100.00 100.00 99.63 100.00 100.00 99.54 100.00 99.74 100.00 100.00 100.00 K jcn_only_AD CG17683,I_chr2R_18774_18869 chr2R + chr2R_19470_19541 chr2R_19485_19541 chr2R_19542_19695;chr2R_19065_19469 100.00 95.74 97.62 100.00 100.00 100.00 98.57 100.00 96.70 96.77 100.00 98.80 97.73 100.00 100.00 100.00 100.00 97.87 100.00 99.25 97.96 100.00 100.00 100.00 96.43 100.00 98.86 100.00 100.00 100.00 100.00 100.00 100.00 98.63 100.00 100.00 100.00 98.25 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG8468 chr2R + chr2R_10107651_10108112;chr2R_10107548_10108112;chr2R_10107621_10108112 chr2R_10107616_10108112 chr2R_10108113_10108270;chr2R_10107405_10107547 3.08 2.72 3.18 1.93 4.49 2.17 6.85 2.19 3.95 6.25 5.22 2.83 4.96 2.60 7.19 5.19 3.01 2.16 4.42 3.31 2.48 4.48 2.00 0.79 4.11 3.17 3.60 2.41 2.68 0.78 7.49 3.47 1.43 3.92 2.68 7.21 1.94 3.51 1.82 3.92 3.73 4.66 0.79 3.08 2.96 2.74 3.52 3.64 5.13 1.32 2.01 5.63 2.27 2.47 3.26 1.53 1.14 1.02 K intron_retention I_chr2R_9844856_9845327,CG13349,RI_chr2R_9846641_9846709 chr2R - chr2R_9846641_9846709 chr2R_9846640_9846641;chr2R_9846709_9846710 chr2R_9846628_9846640;chr2R_9846710_9846809 97.73 97.67 96.43 98.44 96.55 100.00 97.78 98.53 94.52 97.62 96.15 96.43 95.83 96.67 98.36 100.00 86.21 97.30 97.22 98.59 96.30 97.66 97.92 98.25 100.00 100.00 99.09 100.00 99.24 93.75 97.73 98.11 94.62 97.78 97.83 98.25 98.68 98.11 98.63 95.74 100.00 97.33 93.10 98.53 95.06 94.74 98.21 95.45 96.30 96.63 97.96 96.55 95.45 98.00 97.06 94.92 98.41 98.84 K alternative_donor Tango1,I_chr2L_6652445_6652752,I_chr2L_6652699_6652752 chr2L + chr2L_6652427_6652496 chr2L_6652445_6652496 chr2L_6652497_6652569;chr2L_6652345_6652426 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG13957,RI_chrX_16210869_16210936 chrX + chrX_16210869_16210936 chrX_16210873_16210936 chrX_16210937_16211036;chrX_16210769_16210868 92.27 100.00 NA NA NA NA 100.00 90.91 94.12 NA NA 93.75 NA 87.50 87.50 90.91 NA NA 90.00 100.00 NA 100.00 NA 90.91 NA NA 100.00 NA 100.00 NA 90.00 NA 100.00 100.00 NA NA 100.00 NA 87.50 91.67 90.00 90.91 NA 100.00 100.00 88.89 88.89 85.71 92.86 NA 90.91 NA 100.00 NA 100.00 87.50 91.67 100.00 K alternative_acceptor CG3638,REI_chrX_1128310_1128786,RI_chrX_1128313_1128642,I_chrX_1128313_1129783,EI_chrX_1128313_1130453,I_chrX_1128313_1130466,RI_chrX_1128313_1130468,I_chrX_1132012_1132060 chrX - chrX_1128310_1128786 chrX_1128313_1128786 chrX_1128787_1128886;chrX_1128213_1128309 90.00 NA NA 100.00 NA NA NA NA 90.00 84.62 NA 90.00 NA NA 88.89 NA NA NA NA 100.00 NA NA 88.89 NA NA NA 90.00 NA 92.31 92.86 NA 100.00 92.68 NA 90.91 88.89 87.50 75.00 91.67 94.44 75.00 100.00 NA 84.21 95.00 76.92 NA 78.79 NA NA 88.89 NA 100.00 NA NA NA NA 80.00 K intron_retention CG12863 chr2R - chr2R_10508312_10508362 chr2R_10508311_10508312;chr2R_10508362_10508363 chr2R_10508130_10508311;chr2R_10508363_10508817 0.00 NA NA 33.33 NA NA 12.50 0.00 2.94 NA NA 5.56 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA K intron_retention CG9773 chr3R - chr3R_4501240_4501294 chr3R_4501239_4501240;chr3R_4501294_4501295 chr3R_4500982_4501239;chr3R_4501295_4501654 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.05 1.82 0.00 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 2.11 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Mi-2 chr3L - chr3L_19881576_19881637 chr3L_19881575_19881576;chr3L_19881637_19881638 chr3L_19881332_19881575;chr3L_19881638_19881714 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.52 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention cdi,mRpL55 chr3R - chr3R_14920308_14920363 chr3R_14920307_14920308;chr3R_14920363_14920364 chr3R_14920110_14920307;chr3R_14920364_14920566 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Vha100-1,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24962422_24962797 chr3R_24962633_24962797 chr3R_24962798_24962897 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.70 0.00 0.83 0.00 0.00 0.00 0.61 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563461_567573 chr3R_563460_563461;chr3R_567573_567574 chr3R_563195_563460;chr3R_567574_568885 69.84 75.00 69.23 91.11 68.00 70.83 50.00 66.67 73.68 93.33 59.09 69.84 79.17 70.97 67.86 80.85 69.57 74.07 78.12 73.85 63.64 76.92 62.86 75.00 76.47 85.71 74.07 73.33 65.22 73.68 84.85 60.00 54.55 65.22 69.23 73.68 70.73 84.21 59.26 63.16 55.00 75.44 63.64 65.38 63.16 70.59 53.33 65.38 66.67 65.00 65.91 76.92 68.42 87.50 85.71 61.11 70.97 62.07 K alternative_donor Atg18,I_chr3L_8182683_8182941 chr3L + chr3L_8180503_8180578;chr3L_8180294_8180578 chr3L_8180319_8180578 chr3L_8180579_8180676;chr3L_8180118_8180293 4.00 5.08 3.33 7.14 4.08 4.00 6.67 9.43 3.31 3.70 0.00 3.06 4.00 4.00 4.00 5.88 9.84 4.17 4.84 6.73 1.69 3.74 2.15 0.00 3.70 4.55 4.23 5.26 8.89 2.94 5.13 3.12 6.19 5.75 5.77 8.51 2.27 0.00 4.29 5.32 7.41 4.88 4.65 4.00 0.00 2.17 1.52 4.69 4.46 4.00 2.90 2.94 2.38 3.92 4.76 1.96 0.00 2.90 K intron_retention CG7816,R_chr3R_25691122_25691551,RI_chr3R_25691122_25692883,RI_chr3R_25691122_25694436 chr3R - chr3R_25691122_25692901 chr3R_25691121_25691122;chr3R_25692901_25692902 chr3R_25691022_25691121;chr3R_25692902_25692936 67.34 62.50 75.36 78.95 68.63 81.82 78.46 77.98 72.93 58.82 70.37 71.58 66.67 71.79 87.04 80.33 75.44 76.00 78.57 82.40 75.81 NA 64.00 50.00 58.33 82.93 53.33 NA 66.67 70.00 78.02 60.87 66.67 76.71 40.00 NA 63.16 58.33 50.00 65.00 60.00 76.86 89.47 43.75 61.11 47.62 NA 59.09 81.63 50.00 52.17 60.00 46.15 NA 74.65 61.54 36.36 68.00 K intron_retention Ir chr3R + chr3R_19009887_19009944 chr3R_19009886_19009887;chr3R_19009944_19009945 chr3R_19009166_19009886;chr3R_19009945_19011342 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.16 3.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RpS14a,I_chrX_7827880_7828041,F_chrX_7841357_7841447 chrX + chrX_7827808_7828041 chrX_7827880_7828041 chrX_7828042_7828141;chrX_7827780_7827807 0.00 0.00 0.00 0.03 0.00 0.04 0.03 0.02 0.00 0.00 0.04 0.02 0.04 0.00 0.02 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.04 0.00 0.00 0.15 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.27 0.00 K alternative_acceptor CG42574,I_chr3R_618802_618939,I_chr3R_621543_625413,I_chr3R_621546_625413 chr3R - chr3R_621543_622210 chr3R_621546_622210 chr3R_622211_622332;chr3R_621459_621542 45.99 46.15 NA 41.67 55.56 NA 41.67 57.14 41.86 42.86 36.36 57.50 NA 50.00 NA 50.00 41.67 NA NA 41.94 NA 54.69 51.28 50.00 47.83 37.50 47.06 41.67 50.00 43.75 45.83 NA 33.33 52.38 66.67 57.14 48.84 45.00 40.74 38.46 NA 43.33 NA 52.17 NA NA NA 50.00 48.39 NA 42.11 36.36 NA NA 40.00 NA NA NA K intron_retention CG6765,CG6776,se chr3L + chr3L_8510518_8510571 chr3L_8510517_8510518;chr3L_8510571_8510572 chr3L_8510416_8510517;chr3L_8510572_8510924 90.00 90.00 NA 100.00 87.50 100.00 100.00 91.67 81.25 NA NA 94.12 100.00 NA 91.67 NA NA 100.00 NA 86.67 NA 75.00 NA NA NA NA 100.00 NA 92.86 87.50 92.31 88.89 92.31 82.35 100.00 NA 76.92 NA 92.86 71.43 88.89 82.61 100.00 NA 81.82 83.33 88.89 89.47 94.12 77.78 90.00 NA NA 90.00 90.00 66.67 76.47 69.23 K intron_retention CG10375 chr3R + chr3R_19593593_19593730 chr3R_19593592_19593593;chr3R_19593730_19593731 chr3R_19593346_19593592;chr3R_19593731_19594051 0.00 6.45 0.00 0.00 0.00 0.00 0.00 0.00 5.66 NA 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 6.67 0.00 5.71 0.00 NA NA 0.00 0.00 NA 2.38 0.00 0.00 0.00 0.00 0.00 4.76 0.00 5.56 0.00 0.00 NA 0.00 0.00 14.29 4.00 0.00 13.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention tsr,I_chr2R_19932706_19933121 chr2R - chr2R_19932706_19934188 chr2R_19932705_19932706;chr2R_19934188_19934189 chr2R_19932606_19932705;chr2R_19934189_19934352 0.11 0.12 0.12 0.28 0.15 0.15 0.08 0.09 0.15 0.00 0.00 0.14 0.12 0.11 0.05 0.09 0.00 0.15 0.22 0.17 0.13 0.08 0.00 0.09 0.15 0.14 0.19 0.08 0.06 0.23 0.13 0.11 0.20 0.14 0.11 0.10 0.00 0.11 0.15 0.08 0.08 0.11 0.14 0.16 0.10 0.06 0.08 0.16 0.24 0.21 0.04 0.00 0.07 0.06 0.19 0.06 0.00 0.00 K intron_retention lig,I_chr2R_3960977_3961116,I_chr2R_3960977_3961119,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3960740_3960871 chr2R_3960739_3960740;chr2R_3960871_3960872 chr2R_3960632_3960739;chr2R_3960872_3960976 0.83 1.15 0.80 0.53 0.00 0.00 1.91 1.24 0.68 0.00 0.00 0.68 1.60 1.01 0.00 2.06 0.00 0.00 1.06 0.83 0.00 2.78 1.11 1.49 2.24 0.47 2.06 2.91 1.02 0.59 0.96 2.27 1.55 1.14 0.74 2.97 1.11 0.26 0.75 1.70 2.50 1.37 0.50 1.28 0.00 0.74 0.54 4.49 1.47 0.78 0.80 0.00 0.00 0.35 1.63 0.00 0.00 2.67 K intron_retention CG30389,I_chr2R_17044803_17047935 chr2R - chr2R_17044803_17047933 chr2R_17044802_17044803;chr2R_17047933_17047934 chr2R_17044703_17044802;chr2R_17047934_17048045 4.44 3.85 10.00 6.45 NA NA 24.00 0.00 4.08 0.00 0.00 8.89 NA 10.53 0.00 15.38 NA 20.00 0.00 8.62 NA 20.55 3.85 5.26 0.00 25.00 13.04 13.64 15.62 5.36 1.23 4.35 5.13 7.89 0.00 4.44 0.00 0.00 3.70 6.12 5.00 12.50 NA 3.57 4.00 2.70 0.00 2.47 2.56 7.41 10.81 0.00 0.00 12.50 0.00 10.00 13.33 0.00 K intron_retention SRm160 chr3L + chr3L_13032440_13032504 chr3L_13032439_13032440;chr3L_13032504_13032505 chr3L_13031829_13032439;chr3L_13032505_13034511 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG8184,I_chrX_15620707_15620769 chrX + chrX_15608415_15608749 chrX_15608427_15608749 chrX_15608750_15608989;chrX_15607958_15608414 33.33 30.56 34.21 32.26 34.62 37.50 36.92 31.75 34.74 36.00 45.83 36.73 42.50 36.54 43.75 35.00 38.24 32.35 36.17 25.42 44.00 48.48 30.30 35.71 23.53 26.92 32.61 33.33 23.53 26.47 34.29 NA 29.17 27.69 37.04 24.39 36.76 32.43 43.75 29.41 NA 41.07 33.33 19.51 NA NA NA 29.41 30.00 NA 21.15 32.00 NA NA 23.68 55.56 NA NA K jcn_only_AA CG3056,REI_chrX_1265808_1265906 chrX + chrX_1265808_1265947 chrX_1265808_1265906 chrX_1265708_1265807;chrX_1265948_1266006 0.00 0.00 2.13 0.00 0.00 0.00 1.37 2.15 0.00 0.00 0.00 1.01 1.72 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 1.94 2.06 0.00 0.00 0.00 1.92 2.56 0.00 1.32 4.08 0.00 0.83 0.00 1.61 1.43 0.00 0.00 1.01 0.91 2.50 1.77 0.00 1.49 1.72 0.00 0.00 0.00 1.79 3.12 0.00 0.00 0.00 2.56 1.64 0.00 0.00 1.39 K intron_retention CG15817 chr3R + chr3R_25055071_25055230 chr3R_25055070_25055071;chr3R_25055230_25055231 chr3R_25054912_25055070;chr3R_25055231_25055299 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 K intron_retention CG7597 chr3L + chr3L_21514656_21514721 chr3L_21514655_21514656;chr3L_21514721_21514722 chr3L_21514182_21514655;chr3L_21514722_21515789 0.00 0.00 3.85 4.65 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 2.38 0.00 0.00 K intron_retention CG14997,pav chr3L + chr3L_4245303_4245363 chr3L_4245302_4245303;chr3L_4245363_4245364 chr3L_4244752_4245302;chr3L_4245364_4246268 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 5.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention lilli chr2L + chr2L_2951383_2951469 chr2L_2951382_2951383;chr2L_2951469_2951470 chr2L_2951191_2951382;chr2L_2951470_2951556 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG15814,I_chrX_17743744_17743940 chrX - chrX_17744102_17744321 chrX_17744102_17744245 chrX_17743941_17744101;chrX_17744322_17744390 52.17 57.69 55.56 47.89 43.55 48.28 67.21 54.84 41.89 59.46 46.67 58.33 52.38 54.10 47.54 72.34 45.28 53.33 50.85 48.15 45.16 56.44 53.98 48.89 56.52 53.66 60.00 47.83 47.06 48.48 56.63 54.10 45.16 58.57 52.17 57.89 50.29 50.00 48.21 54.02 53.12 39.34 51.06 70.59 41.67 55.68 49.25 49.02 50.37 65.00 58.44 42.47 56.58 61.11 35.14 51.16 54.29 35.78 K jcn_only_AD Spred,I_chr2R_10655876_10656041,I_chr2R_10655876_10656193,I_chr2R_10655876_10656868 chr2R - chr2R_10655876_10656848;chr2R_10655876_10656878;chr2R_10655876_10656782;chr2R_10655876_10656526 chr2R_10655876_10656871 chr2R_10655776_10655875;chr2R_10656879_10656886 0.00 0.00 7.89 2.50 0.00 6.25 0.00 3.17 2.78 NA 0.00 0.00 3.12 2.63 0.00 1.56 0.00 7.14 0.00 2.78 2.70 NA 0.00 0.00 NA 3.57 0.00 0.00 NA 0.00 2.56 NA NA 0.00 2.70 2.33 NA NA NA 0.00 NA 3.33 0.00 4.08 NA 0.00 0.00 0.00 3.92 0.00 1.92 0.00 0.00 0.00 2.38 0.00 0.00 NA K jcn_only_AD msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585739_2586402;chr3L_2585739_2586036;chr3L_2585739_2586413 chr3L_2585739_2586265 chr3L_2585639_2585738;chr3L_2586414_2586502 0.27 1.98 0.47 0.00 0.87 0.00 0.78 0.29 0.28 1.47 0.62 0.52 0.00 0.00 0.00 0.55 1.42 0.58 0.48 0.51 0.00 0.00 0.49 0.00 0.74 0.00 0.00 0.00 1.52 0.69 0.00 0.00 0.53 0.00 0.00 0.00 1.59 0.00 0.00 0.33 0.00 0.27 0.00 0.49 0.90 0.00 0.00 0.28 0.49 1.79 0.48 0.00 0.00 0.00 0.00 0.00 0.00 2.61 K intron_retention tral,I_chr3L_12512171_12512251 chr3L + chr3L_12511058_12511123 chr3L_12511057_12511058;chr3L_12511123_12511124 chr3L_12510528_12511057;chr3L_12511124_12511324 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.80 4.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette DCAP,RI_chr2R_6183553_6192101,I_chr2R_6188094_6192101 chr2R + chr2R_6183553_6192128;chr2R_6183553_6192101 chr2R_6183553_6187994;chr2R_6188094_6192101,chr2R_6188094_6192128 chr2R_6187995_6188093 chr2R_6183453_6183552;chr2R_6192129_6192201 45.49 36.84 28.57 41.67 30.77 75.00 50.00 52.00 37.50 40.00 NA 95.24 22.22 30.77 52.94 57.14 25.00 50.00 60.00 42.86 NA 31.25 50.00 40.91 55.56 40.00 41.67 10.53 36.36 43.75 53.85 60.00 59.09 56.25 37.50 50.00 44.44 33.33 58.82 48.48 NA 44.83 42.86 47.37 47.37 55.00 40.91 50.00 38.46 32.00 36.84 46.15 53.85 47.06 46.67 47.06 41.38 65.85 K intron_retention Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2607875_2608140 chr3L_2607874_2607875;chr3L_2608140_2608141 chr3L_2607693_2607874;chr3L_2608141_2608319 0.29 0.00 0.41 0.18 0.00 0.84 0.29 0.87 0.42 0.00 0.00 0.83 1.15 0.46 0.43 0.53 0.24 0.00 0.51 0.31 0.45 1.14 0.29 0.00 0.35 0.00 0.61 0.00 0.95 0.65 0.90 0.00 0.49 0.51 0.00 0.28 0.00 0.16 0.35 0.41 0.33 0.24 0.92 0.00 0.00 0.00 0.23 1.04 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 K intron_retention Vps4,I_chrX_17802079_17802606 chrX + chrX_17804043_17804110 chrX_17804042_17804043;chrX_17804110_17804111 chrX_17803814_17804042;chrX_17804111_17804636 0.82 1.40 0.83 9.16 0.00 0.44 1.45 0.76 0.82 2.16 1.08 0.00 0.57 0.00 2.81 0.00 0.00 0.51 1.93 1.38 1.55 1.81 1.40 1.07 0.90 3.69 7.45 7.52 3.01 0.40 1.06 0.00 0.74 0.71 1.20 0.93 0.85 0.00 0.40 0.73 2.72 1.26 0.00 0.00 1.11 0.47 0.41 1.99 0.75 0.82 0.26 0.00 0.00 0.51 1.19 1.04 0.37 0.79 N cassette spri,I_chrX_10404621_10469422,I_chrX_10413811_10440661,I_chrX_10417598_10440661 chrX - chrX_10413811_10438418;chrX_10413811_10469422;chrX_10413811_10440661 chrX_10413811_10416835;chrX_10417598_10440661,chrX_10417598_10469422,chrX_10417598_10438418 chrX_10416836_10417597 chrX_10413711_10413810;chrX_10469423_10469435 94.12 96.77 96.43 90.91 95.45 96.15 97.37 88.00 94.92 81.82 90.48 93.75 100.00 95.65 93.75 89.66 95.24 94.74 92.31 96.49 100.00 81.05 91.30 98.28 100.00 96.00 100.00 95.24 88.89 95.45 96.77 85.71 93.67 88.64 89.74 96.36 98.57 97.62 94.37 94.87 87.88 92.16 94.12 93.10 85.71 93.33 95.83 89.58 93.88 94.44 92.98 87.10 85.19 100.00 90.91 85.71 95.45 85.29 K intron_retention shrb chr2R - chr2R_5030506_5030563 chr2R_5030505_5030506;chr2R_5030563_5030564 chr2R_5030222_5030505;chr2R_5030564_5030741 0.00 0.34 0.74 0.58 0.00 0.00 0.31 0.27 0.00 0.00 0.00 0.20 0.00 0.00 0.35 0.36 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.26 0.40 0.00 1.52 5.14 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.52 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG14646 chr3R + chr3R_216781_216836 chr3R_216781_216832 chr3R_216400_216780;chr3R_216837_217542 98.96 97.92 98.84 98.20 100.00 100.00 99.15 100.00 99.46 100.00 97.47 100.00 98.95 97.80 98.96 99.31 97.62 98.75 100.00 97.70 98.95 100.00 99.28 100.00 100.00 100.00 100.00 97.87 93.33 100.00 96.21 100.00 98.18 100.00 100.00 98.88 99.05 97.44 98.46 97.71 100.00 97.80 98.81 100.00 96.92 98.54 99.07 94.34 100.00 100.00 98.67 98.61 97.30 99.10 99.15 98.85 100.00 97.87 K jcn_only_AD CdGAPr chr2L - chr2L_19782826_19791763 chr2L_19782826_19782882 chr2L_19782421_19782825;chr2L_19791764_19791863 0.00 0.00 0.00 2.38 NA 0.00 2.70 5.00 0.00 0.00 NA 1.54 0.00 0.00 2.63 0.00 4.00 7.69 3.70 0.00 0.00 7.04 0.97 1.96 0.00 0.00 6.00 5.00 1.72 0.00 1.28 0.00 0.00 0.00 0.00 0.00 1.45 0.00 2.27 2.50 3.33 3.17 3.70 1.35 4.35 0.00 0.00 4.12 0.00 0.00 1.23 0.00 4.55 NA 0.00 NA 0.00 0.00 K jcn_only_AA CG9799,I_chr3R_9213119_9213164 chr3R - chr3R_9213102_9213164 chr3R_9213119_9213164 chr3R_9213165_9213264;chr3R_9213019_9213101 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 2.70 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.66 0.00 1.69 0.00 0.00 1.23 0.00 0.00 0.00 1.64 1.98 0.00 1.92 0.00 1.01 2.56 2.30 0.00 1.82 0.00 1.96 1.16 1.22 0.00 0.00 1.54 2.63 0.00 0.00 0.87 0.00 K intron_retention CG14231 chrX - chrX_19595522_19595576 chrX_19595521_19595522;chrX_19595576_19595577 chrX_19593871_19595521;chrX_19595577_19595852 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 5.56 0.00 0.00 0.00 0.00 0.00 2.86 0.00 5.36 0.00 0.00 3.45 0.00 21.88 2.56 0.00 0.00 1.47 0.00 0.00 5.71 1.37 0.00 1.49 1.41 7.41 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 5.41 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 K jcn_only_AD CG12655,I_chrX_19852934_19853195 chrX - chrX_19852934_19853333 chrX_19852934_19853195 chrX_19852834_19852933;chrX_19853334_19853626 0.88 0.80 0.41 2.62 0.78 0.51 0.35 0.32 1.16 0.00 0.90 0.95 0.88 0.82 0.70 2.86 0.00 2.16 1.05 0.97 1.00 1.10 0.45 0.96 1.46 0.85 0.88 0.00 1.17 0.35 1.32 1.03 2.28 0.71 1.83 1.66 0.79 0.93 0.88 0.00 0.49 1.72 1.08 0.52 1.69 0.58 1.11 1.23 0.22 0.23 1.40 0.29 0.00 0.65 1.09 0.40 1.33 1.08 K alternative_acceptor dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21309084_21310000;chr2L_21309092_21310000 chr2L_21308996_21310000 chr2L_21310001_21310009;chr2L_21308992_21308995 46.15 NA NA 37.50 NA NA 30.77 27.27 47.06 NA NA 61.54 NA NA NA 31.25 33.33 NA 50.00 66.67 NA 20.00 NA NA NA NA NA NA NA NA 50.00 NA 25.00 46.15 NA NA NA NA NA NA NA 53.33 NA NA NA 0.00 NA 13.33 57.14 NA NA NA NA NA 57.14 NA NA 57.14 K jcn_only_AA mthl10 chr3L - chr3L_335170_335244 chr3L_335200_335244 chr3L_335245_335300;chr3L_335101_335169 3.83 4.88 4.49 3.80 1.72 4.35 5.36 6.13 7.63 8.70 3.85 6.21 2.86 6.06 4.65 1.79 2.00 6.49 3.85 4.29 2.50 3.45 2.63 NA NA 9.30 8.70 NA 2.63 0.00 4.58 2.44 0.00 7.25 7.89 0.00 0.00 3.33 11.90 1.74 2.04 4.51 3.28 11.29 2.94 1.14 4.55 2.33 1.96 NA 12.90 3.03 NA 7.14 5.62 2.27 3.23 3.26 N intron_retention vap,RI_chrX_15897976_15899352,I_chrX_15897976_15899654,I_chrX_15898011_15899654,I_chrX_15898427_15899017,RI_chrX_15898427_15899654,RI_chrX_15899237_15899352,I_chrX_15899237_15899654 chrX - chrX_15897914_15899352 chrX_15897913_15897914;chrX_15899352_15899353 chrX_15897911_15897913;chrX_15899353_15899365 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Nedd4,I_chr3L_17534504_17535990,I_chr3L_17535485_17536604,I_chr3L_17536186_17536604,I_chr3L_17536813_17536863 chr3L + chr3L_17535913_17535990 chr3L_17535912_17535913;chr3L_17535990_17535991 chr3L_17535876_17535912;chr3L_17535991_17536035 27.27 NA NA NA NA NA 30.77 NA 16.67 0.00 NA 33.33 NA NA NA NA NA NA NA 17.65 NA 25.00 NA NA NA NA 40.00 NA NA NA NA 27.27 25.00 NA NA NA 26.67 NA 45.45 29.17 NA NA NA 28.57 NA NA NA 21.43 NA NA 35.71 NA NA NA NA NA NA NA K alternative_acceptor CG5087 chr3L + chr3L_8993558_8993705 chr3L_8993558_8993702 chr3L_8993439_8993557;chr3L_8993706_8994883 88.19 NA NA 93.33 NA NA 87.50 92.86 80.00 NA NA 90.00 NA NA NA 83.33 NA NA 75.00 87.50 NA 88.89 100.00 77.78 NA NA NA NA NA 88.89 NA NA NA 90.91 NA NA NA NA NA 85.71 NA 100.00 NA 80.00 NA NA NA NA 78.57 NA 90.91 NA NA NA 88.89 NA 87.50 NA K intron_retention CLIP-190,I_chr2L_17394493_17404060,I_chr2L_17401291_17404060,I_chr2L_17401582_17402303 chr2L + chr2L_17402486_17404729 chr2L_17402485_17402486;chr2L_17404729_17404730 chr2L_17402375_17402485;chr2L_17404730_17404840 10.53 10.53 10.53 9.09 6.25 10.00 23.53 0.00 11.11 NA 12.50 12.12 NA 10.53 8.00 7.41 NA 0.00 0.00 11.11 0.00 NA 9.68 4.76 NA NA 12.00 NA NA 50.00 10.53 NA 22.73 14.29 NA NA 12.12 8.70 21.05 10.34 NA 15.15 13.33 8.70 NA 20.00 NA 15.38 10.34 NA 9.68 21.43 NA NA 0.00 0.00 NA 12.50 K alternative_donor Traf-like,I_chrX_16309163_16309641,I_chrX_16309212_16309689,I_chrX_16309561_16309641,I_chrX_16309561_16309689,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16309561_16309689;chrX_16309163_16309689 chrX_16309619_16309689 chrX_16309690_16309741;chrX_16309112_16309162 95.45 100.00 100.00 92.59 100.00 100.00 97.06 94.12 95.16 100.00 95.00 97.78 90.00 95.83 96.55 100.00 96.15 96.55 96.67 89.58 96.00 93.55 86.96 95.83 87.50 95.65 100.00 85.71 100.00 94.74 82.76 88.24 87.50 97.78 85.00 80.00 93.33 100.00 100.00 87.10 85.71 92.16 95.45 100.00 92.31 90.91 87.50 89.29 96.08 100.00 89.66 95.00 92.86 100.00 96.97 95.65 96.55 81.48 K jcn_only_AD CG40178,I_chr3LHet_1194286_1226423,I_chr3LHet_1281030_1306994 chr3LHet - chr3LHet_1344240_1360665 chr3LHet_1344240_1351732 chr3LHet_1344189_1344239 89.49 NA NA 65.38 NA NA 63.64 86.67 85.71 NA NA 92.31 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.65 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD E(bx),I_chr3L_236428_236553,RI_chr3L_236428_236858,RI_chr3L_236451_239054,RI_chr3L_236508_236862,I_chr3L_239186_239264,I_chr3L_246324_246699 chr3L - chr3L_236428_236553;chr3L_236428_239054;chr3L_236428_236862 chr3L_236428_236858 chr3L_236408_236427 0.00 0.00 2.22 0.00 0.00 0.00 4.08 1.22 0.00 0.00 0.00 1.19 4.17 2.50 0.00 1.89 0.00 0.00 2.04 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 2.63 5.13 0.00 0.00 3.49 0.00 5.00 0.00 0.00 0.00 1.32 NA 4.35 6.25 2.22 0.00 3.12 3.45 1.82 4.40 3.45 3.28 0.00 0.00 0.00 0.00 2.78 0.00 0.00 K cassette Mical,RI_chr3R_5842549_5844218,I_chr3R_5843939_5844218,I_chr3R_5847106_5863537,I_chr3R_5863483_5863537,I_chr3R_5863613_5868513 chr3R - chr3R_5842549_5844218 chr3R_5842549_5843294;chr3R_5843562_5844218 chr3R_5843295_5843561 chr3R_5842449_5842548;chr3R_5844219_5844280 7.69 NA NA 0.00 NA NA NA NA 11.11 NA 7.69 8.33 NA NA NA NA NA NA NA 9.09 NA 0.00 7.14 7.69 NA NA 8.33 NA 14.29 7.69 NA NA NA NA NA 0.00 4.00 NA 6.67 10.00 NA 5.26 NA 5.56 NA NA NA 9.09 11.76 NA 16.67 NA NA NA 6.67 NA NA NA K alternative_donor Ten-a chrX + chrX_12097912_12098171;chrX_12097945_12098171;chrX_12098018_12098171;chrX_12098012_12098171 chrX_12098030_12098171 chrX_12098172_12098306;chrX_12097907_12097911 66.67 NA 33.33 NA NA NA NA 75.00 50.00 NA NA NA NA NA 66.67 66.67 NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 50.00 NA NA 66.67 66.67 NA 75.00 66.67 NA NA NA NA 40.00 66.67 NA 66.67 NA NA NA NA NA NA NA K intron_retention CG3353,RI_chr3R_17043671_17044394 chr3R - chr3R_17043434_17043492 chr3R_17043433_17043434;chr3R_17043492_17043493 chr3R_17043050_17043433;chr3R_17043493_17043670 12.33 10.34 0.00 33.33 11.54 0.00 15.52 5.71 9.86 16.13 23.08 9.09 11.36 13.16 6.52 9.09 8.00 9.76 5.00 8.15 12.50 8.51 17.14 13.56 20.00 15.15 13.56 7.41 36.84 19.23 23.81 16.33 4.55 8.77 13.16 17.02 9.38 22.73 14.29 9.09 23.81 8.47 24.00 6.67 18.87 16.92 10.00 23.53 12.33 12.63 10.94 25.00 11.84 13.16 4.00 17.31 10.69 11.88 K cassette CG4096,I_chrX_5601534_5602019 chrX + chrX_5601534_5602019 chrX_5601534_5601589;chrX_5601968_5602019 chrX_5601590_5601967 chrX_5601528_5601533;chrX_5602020_5602119 100.00 NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 100.00 NA NA NA NA 100.00 100.00 NA 100.00 100.00 NA 80.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 K jcn_only_AD G9a,I_chrX_145325_145634,I_chrX_145570_145634 chrX + chrX_145570_145634 chrX_145575_145634 chrX_145635_145734;chrX_145470_145569 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 96.97 96.88 95.83 100.00 100.00 100.00 100.00 97.14 96.77 100.00 100.00 NA 100.00 98.31 100.00 100.00 100.00 100.00 100.00 96.43 100.00 93.10 NA 97.06 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 98.18 NA 100.00 100.00 100.00 NA 100.00 100.00 97.14 97.62 100.00 100.00 100.00 100.00 96.77 95.00 93.55 K intron_retention exba,I_chr3R_1423660_1424665,I_chr3R_1424091_1424665,snoRNA:Psi28S-2442b,snoRNA:Psi28S-2442a,I_chr3R_1425087_1425925,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1424065_1424665 chr3R_1424064_1424065;chr3R_1424665_1424666 chr3R_1423991_1424064;chr3R_1424666_1424765 0.14 0.00 0.00 0.11 0.00 0.25 0.91 0.00 0.17 0.30 0.00 0.00 0.71 0.00 0.00 0.14 0.43 0.38 0.00 0.00 0.00 0.83 0.22 0.36 0.44 0.20 0.24 1.84 0.51 0.19 0.19 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.13 0.23 0.59 0.29 0.29 0.00 0.00 0.15 0.00 0.00 0.21 0.00 0.24 0.35 0.00 0.00 0.30 0.14 0.29 0.00 K alternative_acceptor CG18661 chr2L + chr2L_8997669_8997761 chr2L_8997669_8997722 chr2L_8997600_8997668;chr2L_8997762_8998544 45.45 NA NA NA NA NA 85.71 NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA NA N alternative_acceptor CG17018 chr2L + chr2L_22365325_22365414 chr2L_22365325_22365376 chr2L_22365205_22365324;chr2L_22365415_22365474 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.20 100.00 100.00 100.00 K intron_retention CG13957,RI_chrX_16210869_16210936 chrX + chrX_16209856_16209917 chrX_16209855_16209856;chrX_16209917_16209918 chrX_16208755_16209855;chrX_16209918_16210170 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 8.33 7.69 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA 0.00 6.25 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 4.35 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 K multi_cassette Amph,I_chr2R_8495684_8495920,I_chr2R_8495684_8495960,I_chr2R_8498227_8498492 chr2R + chr2R_8495684_8498083 chr2R_8495684_8496673;chr2R_8497142_8497246;chr2R_8497382_8498083 chr2R_8496674_8497141;chr2R_8497247_8497381 chr2R_8495584_8495683;chr2R_8498084_8498226 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG7267,RI_chrX_8967339_8972369,I_chrX_8971691_8972369 chrX - chrX_8966023_8972369 chrX_8971691_8972369 chrX_8972370_8972469;chrX_8965905_8966022 0.00 0.00 0.00 0.08 0.00 0.00 0.09 0.00 0.06 0.00 0.00 0.07 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.21 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14621,tilB chrX + chrX_21848011_21848366 chrX_21848010_21848011;chrX_21848366_21848367 chrX_21847885_21848010;chrX_21848367_21848914 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 2.86 4.65 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 3.64 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG5746 chr3R - chr3R_20173785_20173868 chr3R_20173803_20173868 chr3R_20173869_20174282;chr3R_20173386_20173784 93.53 95.37 97.10 95.41 89.09 96.43 94.44 97.14 93.10 95.58 97.40 93.38 98.21 97.73 91.76 97.62 96.88 93.83 89.36 86.50 97.06 97.14 93.98 92.86 92.71 92.73 89.36 85.33 97.42 96.27 91.49 97.89 94.38 96.59 89.52 93.39 93.03 89.29 93.53 96.17 91.96 89.94 86.54 89.63 91.57 90.97 96.00 94.88 94.02 93.33 96.03 93.51 90.83 88.66 98.11 90.68 95.45 91.58 K multi_cassette CG40263,F_chr2RHet_1265687_1293040,F_chr2RHet_1298459_1298703,F_chr2RHet_1298459_1311408,F_chr2RHet_1298885_1299622,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1265687_1324445 chr2RHet_1265687_1286307;chr2RHet_1286572_1292103;chr2RHet_1292187_1293055;chr2RHet_1293175_1324445 chr2RHet_1286308_1286571;chr2RHet_1292104_1292186;chr2RHet_1293056_1293174 chr2RHet_1265587_1265686;chr2RHet_1324446_1324530 30.77 35.71 30.77 22.22 50.00 26.67 25.00 26.09 37.50 NA NA 28.57 33.33 30.00 30.00 28.00 42.86 33.33 16.67 80.95 NA NA 36.36 37.50 0.00 14.29 50.00 NA NA 66.67 53.33 NA 16.67 29.17 14.29 NA 50.00 33.33 40.00 30.00 0.00 42.31 41.67 36.36 0.00 14.29 42.86 NA 23.81 0.00 40.00 42.86 17.65 40.00 44.44 30.77 29.41 0.00 N intron_retention spz chr3R - chr3R_22892636_22892843 chr3R_22892635_22892636;chr3R_22892843_22892844 chr3R_22892844_22892921 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG17119,sav chr3R - chr3R_18880351_18880450 chr3R_18880350_18880351;chr3R_18880450_18880451 chr3R_18880136_18880350;chr3R_18880451_18880553 4.03 3.60 1.06 3.68 5.26 4.94 3.85 3.73 3.00 0.00 0.00 7.24 6.74 2.30 3.41 3.82 5.00 1.92 4.17 3.96 5.63 9.78 4.03 3.70 5.43 2.74 9.38 10.81 5.97 4.35 5.43 5.21 4.73 5.00 6.49 6.49 3.55 5.83 2.13 1.38 3.67 3.95 4.41 1.90 3.67 4.03 2.55 10.84 5.52 5.45 4.03 4.81 3.60 2.70 4.72 2.82 5.24 3.37 K alternative_donor CG4119 chrX + chrX_5560347_5560409;chrX_5560351_5560409 chrX_5560355_5560409 chrX_5560410_5560501;chrX_5560114_5560346 29.27 25.49 34.78 36.36 33.33 39.13 34.78 36.00 43.86 18.52 34.78 29.63 34.78 29.17 31.58 36.00 23.81 36.67 33.33 27.91 33.33 19.23 30.67 20.75 29.27 47.62 33.33 25.53 61.90 35.19 43.48 18.92 33.96 24.32 21.88 36.59 22.33 21.13 21.88 23.64 24.14 25.42 36.84 23.91 15.38 25.00 25.00 31.25 35.00 23.91 27.54 25.81 18.18 15.62 36.36 19.05 23.53 42.31 K intron_retention mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818575_7818853 chr3R_7818574_7818575;chr3R_7818853_7818854 chr3R_7818507_7818574;chr3R_7818854_7818892 81.55 78.05 73.33 78.00 78.12 71.05 87.76 77.55 80.61 86.67 78.05 84.44 89.06 81.25 84.48 76.81 76.00 84.85 77.05 83.18 78.18 94.74 82.93 85.19 79.17 82.05 88.24 80.65 90.00 67.86 80.43 84.21 63.04 79.17 83.33 82.76 95.24 96.00 89.29 85.71 80.00 81.55 82.35 87.50 85.00 76.47 85.19 76.67 81.58 81.58 77.78 92.31 76.47 73.33 84.31 79.31 70.59 63.04 K cassette msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2579521_2586402 chr3L_2579521_2585604;chr3L_2585733_2586402 chr3L_2585605_2585732 chr3L_2579455_2579520;chr3L_2586403_2586502 97.74 96.79 98.37 95.33 98.73 98.06 98.63 96.22 98.53 97.22 99.39 97.58 98.26 97.74 96.45 97.81 98.75 95.71 96.24 95.85 97.83 94.06 97.19 98.82 99.28 99.33 98.48 94.29 94.51 98.51 94.64 100.00 93.58 98.56 97.58 99.15 98.75 98.77 97.34 98.00 84.44 96.47 97.24 100.00 98.11 93.65 97.56 96.59 96.13 98.31 96.23 99.22 100.00 95.83 95.57 98.59 100.00 95.12 K intron_retention ssp4,I_chr2R_13409412_13410357,RI_chr2R_13409412_13411004,I_chr2R_13409412_13411328,I_chr2R_13409412_13411588,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13409406_13411328 chr2R_13409405_13409406;chr2R_13411328_13411329 chr2R_13409337_13409405;chr2R_13411329_13411403 43.75 69.23 50.00 13.79 53.33 61.54 69.23 30.30 45.00 NA 38.46 50.00 47.62 31.82 53.85 50.00 29.63 54.17 36.84 43.55 64.29 43.75 44.12 35.48 50.00 25.00 29.63 45.45 46.15 47.06 56.25 50.00 29.41 35.71 22.73 30.00 43.48 69.23 50.00 45.95 NA 45.00 37.04 33.33 28.57 22.22 43.75 47.06 50.00 31.82 42.86 40.00 33.33 27.78 44.00 43.75 22.73 29.41 K intron_retention Tsp42Ee,RI_chr2R_2904593_2904783 chr2R + chr2R_2905132_2905194 chr2R_2905131_2905132;chr2R_2905194_2905195 chr2R_2904940_2905131;chr2R_2905195_2905869 0.08 0.00 0.07 0.08 0.17 0.08 0.21 0.09 0.10 0.00 0.17 0.17 0.17 0.00 0.00 0.06 0.00 0.00 0.00 0.15 0.00 0.13 0.14 0.00 0.00 0.00 0.19 0.57 0.00 0.00 0.08 0.00 0.00 0.10 0.12 0.14 0.07 0.09 0.08 0.05 0.00 0.15 0.10 0.00 0.00 0.00 0.17 0.00 0.12 0.31 0.09 0.13 0.00 0.44 0.13 0.09 0.12 0.00 K intron_retention CG31716,I_chr2L_10397648_10398034 chr2L + chr2L_10402334_10402406 chr2L_10402333_10402334;chr2L_10402406_10402407 chr2L_10401926_10402333;chr2L_10402407_10402562 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG3287,I_chr2R_2698891_2699406,I_chr2R_2700203_2700285 chr2R + chr2R_2698681_2699406;chr2R_2698891_2699406;chr2R_2699349_2699406 chr2R_2698654_2699406 chr2R_2699407_2699506;chr2R_2698533_2698653 1.75 2.27 0.00 1.67 0.00 2.22 2.08 0.00 1.39 0.00 2.94 2.22 0.00 2.13 1.69 5.33 3.85 2.70 1.82 1.04 0.00 8.70 5.00 3.45 0.00 2.33 0.00 9.52 1.75 1.82 0.00 2.70 0.00 0.00 1.59 1.75 2.70 2.70 2.94 0.00 0.00 1.32 0.00 3.33 2.38 1.37 2.04 0.85 1.27 0.00 1.54 0.00 2.70 2.56 1.82 2.70 0.00 4.00 N jcn_only_AD CG32594 chrX + chrX_14927033_14927638;chrX_14927381_14927638;chrX_14926607_14927638 chrX_14927496_14927638 chrX_14927639_14928125;chrX_14925576_14926606 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG4686 chr3R + chr3R_15690389_15690710 chr3R_15690648_15690710 chr3R_15690711_15691019;chr3R_15690320_15690388 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention ssp2,I_chr3L_13964418_13964473 chr3L + chr3L_13964418_13964520 chr3L_13964417_13964418;chr3L_13964520_13964521 chr3L_13964318_13964417;chr3L_13964521_13964573 0.00 0.00 0.00 1.47 0.00 0.00 3.39 1.52 2.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 2.17 2.70 5.48 4.65 0.00 4.44 0.00 0.00 0.00 1.79 0.00 2.53 0.00 0.00 2.08 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 1.92 2.00 0.00 0.00 0.00 K jcn_only_AD CG12393,CG9135 chr2L + chr2L_6048627_6048693;chr2L_6048635_6048693 chr2L_6048631_6048693 chr2L_6048694_6048702;chr2L_6048512_6048626 88.46 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 88.46 NA NA NA NA NA NA NA NA 86.96 NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG6673,CG6662 chr3L - chr3L_8516322_8516834 chr3L_8516322_8516500 chr3L_8516253_8516321;chr3L_8516835_8516849 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 95.00 100.00 97.22 100.00 100.00 100.00 100.00 93.75 100.00 94.12 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 91.30 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 94.44 100.00 96.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2392054 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2390808;chrX_2390959_2391350;chrX_2391522_2392054 chrX_2387584_2387709;chrX_2388437_2388670;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2392055_2392148 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA 66.67 NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA K multi_cassette cno,I_chr3R_999718_999986,I_chr3R_999737_999777,RI_chr3R_1009937_1010000 chr3R - chr3R_1009706_1011090 chr3R_1009706_1010000;chr3R_1010246_1010308;chr3R_1010364_1011090 chr3R_1010001_1010245;chr3R_1010309_1010363 chr3R_1009499_1009705;chr3R_1011091_1011212 99.02 97.30 100.00 97.96 100.00 96.97 98.31 98.21 98.82 100.00 100.00 98.46 96.30 96.77 97.73 100.00 100.00 97.06 97.50 98.78 100.00 95.56 98.41 100.00 97.50 97.22 100.00 98.81 96.10 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 97.14 98.33 100.00 100.00 100.00 100.00 97.92 97.06 100.00 100.00 99.02 100.00 97.67 98.28 100.00 100.00 100.00 97.83 95.65 100.00 100.00 N alternative_acceptor tral,I_chr3L_12512171_12512251 chr3L + chr3L_12508673_12509676 chr3L_12508673_12509658 chr3L_12508464_12508672;chr3L_12509677_12510159 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 60.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG7766,I_chrX_8993495_8994545,I_chrX_8991338_8991387 chrX - chrX_8992447_8995128 chrX_8992446_8992447;chrX_8995128_8995129 chrX_8992117_8992446;chrX_8995129_8995452 89.47 NA 88.89 69.23 NA 90.00 93.75 92.31 89.47 NA NA 93.75 NA NA NA 88.89 100.00 NA 92.31 95.00 NA 100.00 NA 88.89 NA 90.91 90.00 NA 73.33 77.78 69.23 NA 80.00 100.00 NA NA NA NA 60.00 91.67 NA 94.12 NA NA NA NA NA 88.89 77.78 NA 81.82 NA NA NA 85.71 NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2389073;chrX_2389272_2389644;chrX_2389762_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2393243 chrX_2387584_2387709;chrX_2388437_2388670;chrX_2389074_2389271;chrX_2389645_2389761;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2393244_2393291 16.67 20.00 NA NA NA NA NA 20.00 16.67 NA NA 5.26 NA NA 20.00 NA NA NA 20.00 20.00 NA NA NA NA NA NA NA NA NA NA NA NA 12.50 20.00 NA 0.00 11.11 NA NA 6.67 NA 20.00 NA 16.67 NA NA NA 16.67 16.67 NA NA NA NA NA 25.00 NA NA NA K alternative_donor exba,RI_chr3R_1425087_1425302,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1425087_1426209;chr3R_1425087_1425759;chr3R_1425087_1426009 chr3R_1425087_1426125 chr3R_1424987_1425086;chr3R_1426210_1426225 0.00 6.67 0.00 9.52 0.00 0.00 0.00 4.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 3.03 0.00 0.00 8.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 6.67 0.00 0.00 0.00 3.85 0.00 8.70 5.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32369,noncoding_11198 chr3L - chr3L_7771837_7771897 chr3L_7771836_7771837;chr3L_7771897_7771898 chr3L_7771576_7771836;chr3L_7771898_7772844 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.37 5.86 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 K intron_retention eIF5,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15882578_15882649 chrX_15882577_15882578;chrX_15882649_15882650 chrX_15882101_15882577;chrX_15882650_15883142 0.00 0.00 0.00 3.20 0.00 0.00 0.00 0.66 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 1.20 0.00 2.78 1.30 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.57 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rtnl1,I_chr2L_4994416_4994507,RE_chr2L_4994997_5008180,I_chr2L_4999386_5000201,I_chr2L_5027222_5028118 chr2L - chr2L_4994278_4994338 chr2L_4994277_4994278;chr2L_4994338_4994339 chr2L_4993773_4994277;chr2L_4994339_4994415 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.76 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG8399,E_chr2R_11909562_11911687,E_chr2R_11909562_11911694,E_chr2R_11909564_11911694 chr2R + chr2R_11911365_11911590 chr2R_11911365_11911563 chr2R_11911262_11911364;chr2R_11911591_11911719 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA Gmer chr2R - chr2R_18775312_18775372 chr2R_18775317_18775372 chr2R_18775373_18775930;chr2R_18775095_18775311 100.00 NA NA 100.00 NA 100.00 NA 100.00 97.06 NA NA 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA 96.00 NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA NA 100.00 100.00 100.00 96.88 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 K intron_retention RpL3,E_chr3R_7047964_7050565,I_chr3R_7048451_7049116,I_chr3R_7048452_7048540,I_chr3R_7048452_7049579,snoRNA:Me18S-A425,snoRNA:Psi28S-291,I_chr3R_7049970_7050189 chr3R + chr3R_7048452_7049579 chr3R_7048451_7048452;chr3R_7049579_7049580 chr3R_7048352_7048451;chr3R_7049580_7049679 94.44 100.00 100.00 81.08 100.00 94.12 95.83 96.67 97.44 94.74 100.00 90.48 93.75 93.75 95.45 95.24 93.75 93.33 81.25 96.36 90.48 87.04 100.00 86.67 90.91 94.12 97.14 100.00 33.85 92.86 73.68 94.44 96.15 96.67 95.65 89.29 96.55 90.00 96.97 88.57 100.00 90.70 94.44 86.67 84.62 96.00 95.24 88.57 92.73 93.33 100.00 90.00 97.44 100.00 92.00 84.62 96.55 98.15 K intron_retention eff,I_chr3R_10559606_10563141,REI_chr3R_10560141_10566101,RE_chr3R_10563206_10565464,I_chr3R_10563206_10566728 chr3R - chr3R_10560141_10563141 chr3R_10560140_10560141;chr3R_10563141_10563142 chr3R_10560109_10560140;chr3R_10563142_10563205 0.96 0.58 0.95 0.49 1.92 1.03 1.27 0.46 1.37 0.00 1.66 0.54 0.96 0.00 1.81 1.39 1.49 1.20 1.20 1.06 0.57 1.94 1.40 0.68 0.00 0.78 2.73 3.53 0.00 2.34 1.36 0.00 0.96 1.91 1.46 2.65 2.08 0.00 0.00 0.86 1.92 1.33 0.50 0.84 0.00 0.00 0.00 1.32 1.12 0.00 1.90 0.00 0.00 0.00 1.89 0.82 0.73 0.00 K alternative_donor RpS20,snoRNA:Psi28S-2562 chr3R + chr3R_16648582_16648853 chr3R_16648614_16648853 chr3R_16648854_16649080;chr3R_16648524_16648581 99.82 99.86 99.76 99.71 99.89 99.79 99.82 99.90 99.89 99.56 99.90 99.78 99.69 99.86 99.90 99.87 99.95 99.84 99.80 99.78 99.71 99.84 99.86 99.75 99.90 99.83 99.74 99.71 98.72 99.75 99.82 99.57 99.47 99.88 99.79 99.62 99.73 99.86 99.85 99.76 99.71 99.87 99.75 99.85 99.74 99.88 99.82 99.73 99.84 99.90 99.77 99.89 99.81 99.86 99.74 99.82 99.84 99.75 K intron_retention Nedd4,I_chr3L_17536713_17536777,I_chr3L_17536813_17536863 chr3L + chr3L_17536713_17536863 chr3L_17536712_17536713;chr3L_17536863_17536864 chr3L_17536613_17536712;chr3L_17536864_17536877 0.00 0.00 0.00 1.45 0.00 0.00 4.81 0.00 0.39 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 26.42 1.06 0.00 1.96 0.00 1.57 2.99 1.89 0.00 0.00 0.00 0.00 0.00 0.00 1.98 1.70 0.00 0.47 1.28 0.00 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG2862 chr2L + chr2L_2770192_2770258 chr2L_2770191_2770192;chr2L_2770258_2770259 chr2L_2770181_2770191;chr2L_2770259_2770400 8.81 4.95 7.74 13.92 7.58 7.58 8.81 8.11 7.54 4.17 7.57 7.91 5.56 9.22 6.38 7.28 8.53 6.54 7.34 10.22 6.96 8.93 30.14 21.88 22.86 13.86 21.15 20.83 76.07 7.14 8.05 10.18 6.01 6.22 8.57 19.10 15.07 3.85 11.58 9.69 14.14 6.23 8.20 19.63 8.70 13.27 16.22 9.81 7.29 15.73 20.69 13.48 25.64 51.22 7.92 8.93 9.77 5.74 K alternative_donor RI_chrX_502548_513324,CG13366,I_chrX_505719_505889,I_chrX_508729_508806,I_chrX_509727_511477,I_chrX_510004_511407,I_chrX_513176_513324,I_chrX_513519_513631 chrX - chrX_505719_505889 chrX_505719_505783 chrX_505619_505718;chrX_505890_505989 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 95.83 100.00 100.00 100.00 100.00 100.00 93.33 100.00 95.00 100.00 95.65 100.00 K intron_retention nxf2,I_chr3L_16573041_16573135 chr3L - chr3L_16571614_16571675 chr3L_16571613_16571614;chr3L_16571675_16571676 chr3L_16570731_16571613;chr3L_16571676_16571777 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 11.76 NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA 0.00 NA 0.00 NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA 0.00 K jcn_only_AA CG31033,RI_chr3R_25658089_25658914 chr3R - chr3R_25658089_25658914;chr3R_25658071_25658914 chr3R_25658095_25658914 chr3R_25658915_25659003;chr3R_25657989_25658070 17.89 12.31 12.77 50.75 21.21 19.23 52.05 10.53 15.60 21.05 15.56 17.07 24.00 16.95 19.32 39.74 29.09 17.86 14.29 17.89 22.22 21.88 26.19 12.66 24.32 46.88 21.05 13.21 17.54 12.50 15.94 15.71 13.79 24.07 17.65 49.09 24.14 15.94 8.75 13.16 34.44 14.08 17.14 16.67 20.51 11.11 22.03 5.41 22.56 15.62 21.57 19.23 12.77 23.21 19.05 20.00 20.27 12.16 K alternative_donor CG6912 chr3R - chr3R_10962115_10962204 chr3R_10962115_10962193 chr3R_10962052_10962114;chr3R_10962205_10962253 92.82 90.48 94.44 95.45 100.00 96.43 94.44 98.04 90.91 100.00 95.45 90.74 98.51 96.97 93.75 95.16 97.14 89.80 95.12 94.29 96.88 91.03 96.43 97.14 80.00 92.31 91.53 91.30 85.71 90.48 65.38 93.33 88.66 88.64 84.00 85.00 86.96 100.00 91.11 93.75 83.72 91.30 96.30 95.74 94.12 89.09 93.94 90.28 91.18 NA 89.19 93.33 78.57 95.83 94.59 83.72 82.54 91.11 K intron_retention hairy chr3L + chr3L_8669449_8670471 chr3L_8669448_8669449;chr3L_8670471_8670472 chr3L_8668822_8669448;chr3L_8670472_8670567 0.00 0.00 0.00 3.23 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.85 12.12 3.80 0.00 0.00 0.00 0.00 2.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5174,F_chr2R_14309059_14311473 chr2R + chr2R_14312540_14312844 chr2R_14312539_14312540;chr2R_14312844_14312845 chr2R_14312377_14312539;chr2R_14312845_14312913 5.38 6.15 5.23 7.00 5.22 4.62 6.08 6.93 5.97 3.85 7.07 6.79 4.92 6.52 5.52 6.05 7.41 9.09 5.38 5.67 4.55 4.62 4.23 2.19 3.81 2.82 5.56 12.16 7.25 8.33 4.94 4.41 9.23 4.62 2.20 10.53 7.69 2.99 5.10 1.29 3.61 5.56 6.19 4.92 4.26 5.30 3.42 9.33 5.54 7.32 4.37 4.60 5.38 2.94 6.43 7.14 5.03 4.95 K jcn_only_AA Cp190,I_chr3R_11100788_11100846,F_chr3R_11104164_11104239 chr3R - chr3R_11100788_11100846;chr3R_11100334_11100846 chr3R_11100321_11100846 chr3R_11100847_11100931;chr3R_11099837_11100320 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 1.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 K alternative_donor mys,I_chrX_7958795_7961094 chrX + chrX_7955904_7957872;chrX_7955908_7957872;chrX_7955914_7957872;chrX_7955759_7957872;chrX_7956114_7957872;chrX_7956125_7957872;chrX_7955967_7957872 chrX_7955901_7957872 chrX_7957873_7958492;chrX_7955741_7955758 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG13085,REI_chr2L_19426699_19427208,I_chr2L_19426780_19427208,CG16771,I_chr2L_19426895_19427208,I_chr2L_19427121_19427208 chr2L + chr2L_19426780_19427208 chr2L_19426779_19426780;chr2L_19427208_19427209 chr2L_19426758_19426779;chr2L_19427209_19427308 75.00 66.67 66.67 96.43 81.82 NA 77.78 90.48 70.97 NA 66.67 80.95 90.00 88.89 70.00 78.95 58.33 63.64 90.00 69.57 61.54 NA 73.33 75.00 NA NA 100.00 NA NA NA 61.54 NA NA 75.00 NA NA 63.64 NA 70.00 NA NA 64.71 80.00 NA NA NA 88.89 NA 94.44 NA 87.50 81.82 NA NA 64.29 61.54 80.00 NA K intron_retention tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5959679 chr3R_5959309_5959310;chr3R_5959679_5959680 chr3R_5958937_5959309;chr3R_5959680_5959695 44.50 NA NA NA NA NA 50.00 42.86 31.58 NA NA NA 36.36 NA NA 54.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 46.15 NA NA NA NA NA NA NA NA NA K alternative_acceptor Rpb4 chr3R - chr3R_14080814_14081038;chr3R_14080959_14081038 chr3R_14080914_14081038 chr3R_14081039_14081173;chr3R_14080097_14080813 87.50 87.50 81.82 72.73 80.00 100.00 100.00 77.78 78.57 NA 85.71 85.71 83.33 100.00 83.33 90.00 85.71 62.50 81.82 94.74 88.89 87.50 100.00 81.82 100.00 71.43 81.82 83.33 NA 100.00 86.96 100.00 85.71 100.00 71.43 80.00 90.91 87.50 84.62 86.67 NA 87.50 NA 88.89 88.89 100.00 75.00 90.00 88.89 90.00 80.00 88.89 100.00 90.91 81.82 100.00 100.00 87.50 K intron_retention qkr58E-2 chr2R + chr2R_18304702_18304756 chr2R_18304701_18304702;chr2R_18304756_18304757 chr2R_18304601_18304701;chr2R_18304757_18305141 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 5.77 2.22 0.00 0.00 0.00 0.00 0.00 0.00 4.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2388436;chrX_2388671_2390808;chrX_2390959_2391350;chrX_2391522_2393243 chrX_2388437_2388670;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2393244_2393291 0.00 NA NA NA NA NA NA NA NA NA NA 2.70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor T48 chr3R + chr3R_22707555_22709348 chr3R_22707786_22709348 chr3R_22709349_22709912;chr3R_22707495_22707554 88.89 NA NA 100.00 NA NA 100.00 100.00 87.50 80.00 NA 100.00 NA NA NA 85.71 NA NA NA NA NA 88.89 87.50 100.00 71.43 NA 90.00 100.00 87.50 100.00 NA NA 87.50 NA 85.71 100.00 85.71 100.00 100.00 85.71 87.50 80.00 NA 85.71 NA 83.33 NA NA 80.00 91.67 100.00 100.00 NA NA NA NA 88.89 NA K intron_retention vib,RI_chr3R_15051793_15052186 chr3R - chr3R_15044234_15044690 chr3R_15044233_15044234;chr3R_15044690_15044691 chr3R_15044124_15044233;chr3R_15044691_15044768 0.55 0.00 1.64 0.63 0.00 0.00 0.00 2.19 1.55 0.00 0.00 2.14 1.41 0.00 0.00 2.14 0.00 0.00 0.00 1.58 0.00 3.37 1.60 1.29 0.00 0.00 2.24 5.71 0.00 0.00 1.94 0.00 2.50 1.47 1.82 0.84 1.22 2.56 1.82 2.00 0.00 1.18 0.00 0.80 0.00 1.53 0.48 2.22 1.15 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.56 K intron_retention CG12946,noncoding_15730,I_chr3R_5599701_5600032,I_chr3R_5609682_5609889 chr3R - chr3R_5599358_5600032 chr3R_5599357_5599358;chr3R_5600032_5600033 chr3R_5599286_5599357;chr3R_5600033_5600132 88.89 NA 75.00 NA NA 90.00 90.91 88.89 87.50 NA NA 94.74 NA NA 100.00 90.91 88.89 NA NA 81.82 77.78 NA 90.91 88.89 NA 88.89 85.71 88.89 92.86 76.47 90.00 NA 94.12 91.67 NA 91.67 78.95 90.00 85.71 85.00 81.82 94.12 NA NA 90.00 80.00 NA 88.00 83.33 NA 76.47 NA 88.89 NA 90.00 NA NA 94.12 K jcn_only_AA CG12582 chr3R + chr3R_29885_29940;chr3R_29885_29934 chr3R_29885_29987 chr3R_29816_29884;chr3R_29988_30053 9.77 10.30 6.92 6.65 9.85 12.81 8.02 9.21 10.24 7.55 9.31 10.82 7.17 10.00 6.98 8.05 9.09 8.50 8.20 7.71 10.14 8.10 11.39 13.53 11.52 11.50 11.01 5.36 13.27 10.51 7.25 9.57 8.64 10.69 11.19 33.65 9.59 12.53 13.54 8.37 8.93 9.63 11.20 7.89 7.25 9.02 12.35 7.70 8.13 12.27 14.65 11.51 9.78 12.81 9.77 12.96 11.89 7.17 K intron_retention msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585733_2586036 chr3L_2585732_2585733;chr3L_2586036_2586037 chr3L_2585639_2585732;chr3L_2586037_2586103 95.45 NA 90.00 93.75 NA 90.91 88.89 95.45 95.83 NA NA 100.00 100.00 88.89 100.00 90.00 88.89 90.91 100.00 94.44 100.00 95.45 76.92 90.91 100.00 100.00 100.00 NA 95.65 90.00 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 100.00 100.00 88.89 100.00 NA 88.89 NA 89.66 95.00 NA 100.00 90.00 NA NA 93.75 NA NA NA K jcn_only_AD CG2767,RI_chr3R_3832687_3833066 chr3R - chr3R_3832687_3833066 chr3R_3832687_3833053 chr3R_3832587_3832686;chr3R_3833067_3833166 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.73 98.65 99.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.86 100.00 100.00 98.68 100.00 98.18 100.00 99.02 100.00 99.13 100.00 99.15 100.00 98.84 100.00 100.00 100.00 100.00 100.00 98.95 99.41 100.00 100.00 100.00 98.46 100.00 97.59 100.00 100.00 99.22 99.63 K jcn_only_AD CG9485,I_chr2R_17217595_17218598,I_chr2R_17228865_17228924 chr2R + chr2R_17200289_17201928;chr2R_17200246_17201928 chr2R_17200086_17201928 chr2R_17201929_17202269;chr2R_17200084_17200085 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention ald chr3R + chr3R_13497290_13497571 chr3R_13497289_13497290;chr3R_13497571_13497572 chr3R_13497013_13497289;chr3R_13497572_13498579 0.00 0.00 0.00 13.79 0.00 0.00 0.00 2.50 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 2.94 12.50 3.33 0.00 0.00 0.00 0.00 0.00 3.85 0.00 2.56 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Dystrophin chr3R + chr3R_15418846_15420221;chr3R_15418846_15420090 chr3R_15418846_15419517;chr3R_15419821_15420221,chr3R_15419821_15420090 chr3R_15419518_15419820 chr3R_15418545_15418845;chr3R_15420222_15420680 8.33 8.33 10.94 11.90 5.00 7.89 5.77 1.43 4.80 7.41 0.00 14.29 0.00 2.22 7.27 23.33 7.32 4.44 5.26 14.55 2.44 5.06 7.02 9.09 9.38 2.63 11.11 21.43 19.35 10.53 4.84 12.24 33.33 4.90 6.38 33.33 11.70 8.06 9.18 11.86 10.53 7.53 9.52 8.54 19.40 11.94 7.59 13.85 5.22 8.75 5.95 8.82 7.25 8.57 5.63 8.79 8.33 15.71 K intron_retention l(2)k14710 chr2R - chr2R_2101257_2101316 chr2R_2101256_2101257;chr2R_2101316_2101317 chr2R_2100974_2101256;chr2R_2101317_2101607 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 N cassette CG7207 chr3L - chr3L_8281321_8282812 chr3L_8281321_8282269;chr3L_8282584_8282812 chr3L_8282270_8282583 chr3L_8280928_8281320;chr3L_8282813_8282969 100.00 100.00 100.00 65.71 100.00 100.00 100.00 100.00 95.50 100.00 100.00 92.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.34 90.12 78.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 89.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG4433,I_chr3R_15845478_15846094 chr3R - chr3R_15845478_15846094;chr3R_15845478_15846006 chr3R_15845478_15846069 chr3R_15845378_15845477;chr3R_15846095_15846194 100.00 100.00 100.00 99.32 100.00 99.15 100.00 100.00 100.00 98.96 100.00 99.02 100.00 98.89 98.54 98.89 100.00 100.00 99.08 98.44 98.08 100.00 100.00 100.00 100.00 100.00 98.82 99.27 100.00 99.26 99.24 100.00 99.14 100.00 100.00 98.96 99.67 99.51 99.23 100.00 100.00 99.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.21 100.00 99.08 99.09 100.00 100.00 100.00 99.29 100.00 K intron_retention hppy,I_chr2R_15066378_15066915,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15066358_15067003 chr2R_15066357_15066358;chr2R_15067003_15067004 chr2R_15066326_15066357;chr2R_15067004_15067015 100.00 90.00 100.00 95.83 NA 90.00 100.00 95.65 100.00 90.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 84.62 100.00 100.00 100.00 81.82 90.00 100.00 94.44 NA 100.00 95.65 100.00 NA 100.00 91.67 NA 95.83 100.00 100.00 100.00 93.33 NA NA NA 90.00 86.21 90.00 93.75 92.31 NA NA 86.67 77.78 NA NA K intron_retention CG10069,I_chr2R_17169897_17170495,I_chr2R_17170432_17170491,I_chr2R_17171765_17171886 chr2R + chr2R_17171617_17171728 chr2R_17171616_17171617;chr2R_17171728_17171729 chr2R_17171048_17171616;chr2R_17171729_17171734 15.79 15.79 22.22 15.79 NA 6.67 NA 16.22 19.05 NA NA 33.33 12.50 NA 21.05 19.05 NA 10.53 31.58 11.90 NA 7.14 30.00 0.00 NA NA 19.23 NA 0.00 14.29 19.05 13.33 19.23 27.78 NA 10.00 NA 20.00 9.52 21.43 NA 15.62 18.75 NA 8.33 6.06 10.53 15.38 30.00 NA 0.00 NA NA 18.75 17.65 5.56 14.29 NA K jcn_only_AD CG1640,RI_chrX_13265127_13267895,I_chrX_13265553_13267895,I_chrX_13265618_13267895,RI_chrX_13266680_13267895,RI_chrX_13267529_13267895,I_chrX_13271541_13271890 chrX + chrX_13265560_13267895;chrX_13265401_13267895;chrX_13265248_13267895;chrX_13265295_13267895 chrX_13265094_13267895 chrX_13267896_13267973;chrX_13265065_13265093 39.47 37.04 35.38 37.33 24.56 44.44 27.27 34.25 28.95 42.86 33.33 34.21 58.62 20.00 37.74 57.78 22.73 47.06 31.48 46.74 47.62 42.42 25.00 34.55 40.62 36.59 44.44 48.39 50.00 50.82 33.33 65.12 60.00 41.43 50.00 31.58 36.05 40.30 46.67 53.54 52.63 32.53 38.64 37.50 68.18 44.12 39.47 56.92 35.56 38.78 40.91 38.64 47.50 33.33 19.64 36.59 45.95 65.14 K alternative_acceptor CG5989 chr3L - chr3L_8596950_8597005 chr3L_8596956_8597005 chr3L_8597006_8597074;chr3L_8596857_8596949 66.67 66.67 NA 66.67 NA NA 63.64 NA 66.67 NA 63.64 92.86 NA NA 66.67 NA NA NA NA 66.67 75.00 50.00 75.00 68.57 59.09 NA 60.00 69.57 64.00 52.94 NA 69.23 60.00 NA 61.54 63.16 71.43 76.19 71.43 55.56 69.23 70.00 NA 61.90 52.94 60.00 66.67 NA 70.00 62.50 66.67 66.67 80.95 61.11 60.00 64.00 71.43 NA K jcn_only_AD I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17198803_17199019;chr3R_17198803_17199052 chr3R_17198803_17200781 chr3R_17198703_17198802;chr3R_17200782_17200881 82.84 84.85 71.88 78.26 92.31 NA 77.14 77.14 80.00 NA 60.00 86.84 84.00 83.33 78.26 96.55 83.33 79.31 75.00 89.71 90.00 91.18 85.71 87.88 NA 92.11 75.76 NA 73.33 77.27 53.85 80.00 96.55 87.23 NA 75.00 83.72 92.31 83.87 91.23 88.00 79.17 79.17 NA 94.29 82.35 86.96 94.55 82.22 80.65 76.92 84.62 82.14 NA 73.17 76.67 79.17 95.45 N alternative_acceptor CG32138 chr3L + chr3L_14058259_14058688;chr3L_14058259_14059498 chr3L_14058259_14058715 chr3L_14058172_14058258;chr3L_14059499_14060368 94.58 96.60 98.50 93.85 96.53 95.84 96.62 95.09 94.58 94.53 98.47 95.12 91.24 96.14 97.60 95.12 96.15 96.93 94.55 97.11 95.23 80.59 92.75 94.78 92.55 94.50 91.33 89.62 89.58 92.33 95.65 95.11 91.40 97.35 92.41 81.68 93.68 92.78 92.74 93.97 94.19 95.85 95.47 95.14 93.36 93.75 92.36 94.56 97.41 87.92 93.76 92.22 98.60 96.22 96.24 90.94 96.29 96.27 K intron_retention CG11334,I_chr3R_27287685_27288551,I_chr3R_27287691_27288117,F_chr3R_27287720_27288551,RI_chr3R_27288047_27288117 chr3R - chr3R_27287691_27288551 chr3R_27287690_27287691;chr3R_27288551_27288552 chr3R_27287620_27287690;chr3R_27288552_27288651 0.56 0.00 2.78 3.33 0.00 1.79 4.55 2.35 2.38 0.00 0.00 2.63 0.00 0.00 0.00 6.90 0.00 0.00 0.00 1.74 0.00 NA 3.23 3.08 5.00 3.17 4.08 0.00 0.00 0.00 12.68 0.00 0.00 0.00 4.88 0.00 0.00 4.55 2.86 3.16 0.00 2.02 0.00 1.45 0.00 0.00 3.12 0.00 2.25 3.92 1.67 3.12 0.00 0.00 0.00 3.85 1.12 0.00 K intron_retention CG11107 chr2R + chr2R_3275086_3275139 chr2R_3275085_3275086;chr2R_3275139_3275140 chr2R_3274938_3275085;chr2R_3275140_3275933 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7860 chrX + chrX_15464273_15464857 chrX_15464272_15464273;chrX_15464857_15464858 chrX_15463026_15464272;chrX_15464858_15464926 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA NA NA 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 91.67 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 K jcn_only_AA CG16758,I_chr3L_2502724_2503142 chr3L - chr3L_2501142_2503142;chr3L_2500463_2503142 chr3L_2502724_2503142 chr3L_2503143_2503242 1.20 3.77 0.00 0.00 0.00 5.26 5.00 1.20 2.42 1.30 0.00 3.85 0.00 3.03 0.00 0.00 0.00 10.64 0.00 1.19 0.00 NA NA 4.17 NA 0.00 0.00 NA NA NA 0.00 0.00 8.11 1.18 5.00 NA 4.17 0.00 1.47 1.82 NA 1.85 3.23 0.00 13.33 0.00 4.17 2.94 1.04 NA 0.00 4.76 NA 7.69 4.44 3.33 0.00 0.00 K intron_retention pie chr2L - chr2L_10422463_10422529 chr2L_10422462_10422463;chr2L_10422529_10422530 chr2L_10421319_10422462;chr2L_10422530_10422759 0.00 NA 0.00 5.26 NA 0.00 0.00 7.14 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K intron_retention loqs chr2L + chr2L_13384023_13384983 chr2L_13384022_13384023;chr2L_13384983_13384984 chr2L_13383737_13384022;chr2L_13384984_13385674 88.89 NA NA 88.89 NA NA 77.78 NA 83.33 NA NA 100.00 88.89 100.00 100.00 92.31 NA NA NA 92.31 NA NA 77.78 NA NA NA NA NA NA NA 100.00 NA NA 88.89 NA NA NA NA NA 90.91 77.78 90.00 NA NA NA NA NA NA NA 100.00 87.50 87.50 NA NA NA 88.89 NA NA K intron_retention CG5028 chr3R + chr3R_21506921_21506987 chr3R_21506920_21506921;chr3R_21506987_21506988 chr3R_21506843_21506920;chr3R_21506988_21507767 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Eno,I_chr2L_1726650_1727645,I_chr2L_1726656_1727485,EI_chr2L_1727403_1727645,I_chr2L_1728229_1728302 chr2L - chr2L_1726656_1727645;chr2L_1727403_1727645;chr2L_1727559_1727645 chr2L_1726650_1727645 chr2L_1727646_1727735;chr2L_1726556_1726649 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.26 0.32 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.43 0.25 0.00 0.32 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.24 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.54 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.34 0.00 K jcn_only_AD RI_chr3R_205772_205830,Cont,I_chr3R_207254_207600 chr3R + chr3R_207252_207600 chr3R_207254_207600 chr3R_207601_207700;chr3R_207189_207251 0.00 3.33 NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 2.38 2.56 0.00 6.90 3.57 0.00 2.94 1.75 9.30 0.00 0.00 2.27 NA 2.22 0.00 0.00 NA 0.00 1.82 5.00 3.12 0.00 6.06 0.00 2.15 0.00 0.00 0.00 2.06 0.00 6.25 NA 1.28 0.00 3.45 1.69 0.00 NA NA 0.00 NA 0.00 0.00 K cassette Nc73EF,F_chr3L_16952838_16955936,CE_chr3L_16952842_16955936,I_chr3L_16952985_16955434,I_chr3L_16953768_16954599 chr3L + chr3L_16952985_16954599;chr3L_16952985_16955434 chr3L_16952985_16953637;chr3L_16953768_16954599,chr3L_16953768_16955434 chr3L_16953638_16953767 chr3L_16952885_16952984;chr3L_16955435_16955513 38.00 41.33 58.21 19.54 60.00 65.22 44.16 40.24 47.18 20.69 27.12 12.04 27.91 49.09 40.79 67.11 51.11 47.46 24.53 48.33 56.25 30.20 44.78 34.95 34.21 36.84 37.50 26.76 22.22 36.36 51.61 35.48 33.93 51.72 50.91 24.14 28.21 37.27 34.78 26.53 26.67 45.76 46.51 36.36 31.25 43.10 37.68 33.33 49.14 39.47 41.48 37.70 38.00 42.55 44.93 36.11 53.12 50.00 K alternative_acceptor CG13937,RI_chr3L_1877663_1877719 chr3L - chr3L_1881558_1882999;chr3L_1881549_1882999 chr3L_1881477_1882999 chr3L_1883000_1883037;chr3L_1881129_1881476 11.11 NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA 16.67 NA NA NA 11.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA K alternative_donor CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3018025_3018081;chr2L_3018025_3018274;chr2L_3018025_3018163;chr2L_3018025_3018278 chr2L_3018025_3018085 chr2L_3017982_3018024;chr2L_3018279_3018287 18.18 0.00 NA 50.00 NA NA 33.33 30.00 23.81 NA NA 18.18 NA 0.00 50.00 16.67 50.00 NA NA 33.33 NA 33.33 NA 33.33 NA NA NA NA NA NA 22.22 0.00 NA 13.33 NA NA NA NA NA 8.33 0.00 22.22 0.00 22.22 0.00 20.00 NA 16.67 14.29 NA NA NA NA NA 0.00 NA NA 12.50 K intron_retention rho chr3L + chr3L_1464131_1465465 chr3L_1464130_1464131;chr3L_1465465_1465466 chr3L_1463744_1464130;chr3L_1465466_1465822 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 K jcn_only_AD CG6509 chr2L - chr2L_11510851_11511178 chr2L_11510851_11511055 chr2L_11510596_11510850;chr2L_11511179_11511544 2.70 4.35 2.74 0.00 3.39 3.85 3.66 2.52 1.20 0.00 4.17 3.10 2.27 2.78 1.27 3.51 1.67 3.51 2.60 3.25 3.64 2.70 1.63 3.03 3.06 5.00 2.22 1.00 3.23 1.59 4.76 4.35 4.26 2.56 2.67 0.88 1.58 2.52 4.38 7.19 3.51 0.00 0.00 3.68 2.53 1.20 1.22 2.15 0.00 2.52 0.88 4.41 2.41 5.13 4.76 0.00 3.06 4.29 K intron_retention ens,I_chr3L_4130719_4131120 chr3L - chr3L_4129792_4131120 chr3L_4129791_4129792;chr3L_4131120_4131121 chr3L_4129651_4129791;chr3L_4131121_4131220 2.34 2.86 0.00 2.91 3.39 1.32 3.31 2.38 3.53 4.12 5.71 6.99 1.83 2.26 2.84 4.17 0.00 2.73 2.24 1.74 0.00 2.65 1.40 1.69 3.76 0.00 0.58 1.53 3.09 2.73 1.16 0.00 4.73 3.06 1.38 5.71 3.45 1.35 3.85 2.85 2.29 2.35 3.70 1.76 0.00 2.56 0.00 3.50 1.95 0.00 2.34 0.00 2.44 0.00 2.78 1.94 1.49 1.94 K intron_retention Vap-33-1 chrX + chrX_3846255_3846799 chrX_3846254_3846255;chrX_3846799_3846800 chrX_3846141_3846254;chrX_3846800_3848138 0.00 0.00 0.00 0.52 0.00 0.00 1.32 0.00 0.83 0.00 0.00 0.00 1.94 0.81 0.00 0.57 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 K intron_retention Vha16,I_chr2R_2519645_2520499,RI_chr2R_2519646_2519840,I_chr2R_2519646_2520292,I_chr2R_2519646_2520298,I_chr2R_2519775_2520499 chr2R - chr2R_2519646_2519840 chr2R_2519645_2519646;chr2R_2519840_2519841 chr2R_2519546_2519645;chr2R_2519841_2519868 98.10 95.74 95.00 99.19 98.28 95.92 100.00 97.50 98.10 95.83 98.08 99.25 98.46 98.31 98.85 97.00 96.83 98.25 99.05 98.40 97.87 97.30 100.00 96.97 97.37 98.43 100.00 96.67 94.55 100.00 98.55 100.00 97.73 98.51 100.00 97.73 100.00 96.55 92.00 94.87 96.67 98.21 98.25 97.06 100.00 100.00 100.00 97.22 94.53 100.00 97.92 97.67 88.89 100.00 98.67 100.00 96.77 96.30 K intron_retention CG33170,RI_chr3L_22859073_22860499,I_chr3L_22859135_22860499 chr3L + chr3L_22860419_22860499 chr3L_22860418_22860419;chr3L_22860499_22860500 chr3L_22860257_22860418;chr3L_22860500_22860559 85.41 NA NA 77.78 NA NA 77.78 90.91 83.33 NA NA 88.89 NA 100.00 NA 91.67 NA NA 87.50 88.89 NA NA NA NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA 80.00 NA 70.00 NA NA 66.67 61.54 NA 66.67 92.31 NA NA NA NA NA NA 77.78 NA 92.86 K alternative_donor CG6838,I_chr3L_22709306_22709668 chr3L - chr3L_22709303_22709406 chr3L_22709303_22709397 chr3L_22709206_22709302;chr3L_22709407_22709514 96.55 84.21 93.33 97.83 100.00 89.29 97.30 91.49 93.65 90.00 92.00 93.33 96.55 93.10 97.22 97.73 96.30 96.15 96.97 98.46 92.31 97.92 91.67 95.74 93.10 95.65 88.89 86.36 91.38 97.56 97.30 97.06 85.45 98.00 95.65 100.00 98.39 97.44 98.33 98.77 92.11 98.41 100.00 98.00 92.86 98.04 100.00 93.33 98.36 95.24 95.12 96.67 100.00 87.10 97.30 97.56 98.15 95.38 K intron_retention CG1832,I_chr2L_22167179_22167302,I_chr2L_22168644_22168740 chr2L - chr2L_22167254_22167302 chr2L_22167253_22167254;chr2L_22167302_22167303 chr2L_22167243_22167253;chr2L_22167303_22167402 15.00 14.71 14.29 23.26 31.58 25.00 11.76 11.54 19.12 6.67 13.64 19.57 12.90 16.67 16.67 25.00 12.90 25.00 22.22 12.73 21.05 0.00 18.42 14.29 11.11 0.00 22.45 19.05 20.00 15.00 13.04 27.78 7.89 16.28 4.55 8.33 12.50 7.69 13.51 16.67 19.05 14.89 11.11 13.79 14.29 27.27 6.45 23.81 18.03 5.26 16.98 5.56 17.65 23.81 14.29 18.75 22.58 24.32 K jcn_only_AD fws,CG6453 chr2L - chr2L_17480920_17480968;chr2L_17480920_17480972;chr2L_17480920_17481149 chr2L_17480920_17480983 chr2L_17480825_17480919;chr2L_17481150_17481199 20.00 30.00 NA NA 29.63 NA 13.33 27.03 22.22 NA NA 11.11 NA NA 9.09 NA NA NA 15.00 19.35 NA NA NA NA NA NA NA NA NA NA NA NA NA 28.95 NA NA 9.09 NA NA NA NA 20.00 NA NA NA NA NA NA 34.48 NA NA NA NA NA NA NA NA NA K intron_retention I_chr3R_23069667_23070365,CG5987 chr3R - chr3R_23076073_23076129 chr3R_23076072_23076073;chr3R_23076129_23076130 chr3R_23075776_23076072;chr3R_23076130_23076223 51.08 NA NA 38.89 NA NA NA NA NA NA NA NA NA NA NA 57.89 NA NA NA NA NA NA 47.62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 54.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG6420 chr3R - chr3R_22546333_22546398 chr3R_22546332_22546333;chr3R_22546398_22546399 chr3R_22546046_22546332;chr3R_22546399_22546569 90.00 92.31 NA 87.50 NA NA 92.86 92.86 87.50 NA NA 92.31 54.55 87.50 NA 93.33 NA 75.00 88.89 82.35 NA 94.12 100.00 NA NA 100.00 91.67 90.91 71.43 66.67 80.00 84.62 83.33 91.67 NA 76.92 100.00 NA NA 79.55 83.33 87.50 88.89 94.12 83.33 84.62 90.00 76.00 93.75 93.33 92.86 90.00 92.31 90.91 NA 83.33 92.86 94.74 K intron_retention rut,I_chrX_14718760_14718821 chrX - chrX_14686462_14687158 chrX_14686461_14686462;chrX_14687158_14687159 chrX_14685281_14686461;chrX_14687159_14687497 7.79 NA NA 10.00 6.67 NA NA 0.00 7.89 0.00 NA 16.13 NA NA 4.35 NA 0.00 3.70 NA 16.28 NA 12.50 12.00 3.33 NA NA 20.00 NA 13.04 12.20 17.65 5.56 6.25 13.79 11.76 0.00 2.56 4.76 7.14 2.63 7.14 8.33 NA 5.71 4.65 7.69 11.76 8.93 8.00 NA NA NA NA NA 16.67 NA NA 10.00 K cassette CG10353,I_chrX_11775936_11778830,I_chrX_11778617_11778830,RI_chrX_11780885_11780988 chrX - chrX_11775936_11778830;chrX_11775936_11780988 chrX_11775936_11777234;chrX_11777655_11778830,chrX_11777655_11780988 chrX_11777235_11777654 chrX_11775836_11775935;chrX_11780989_11781085 97.64 100.00 97.67 91.80 100.00 100.00 96.49 100.00 98.26 95.71 97.22 97.60 100.00 100.00 97.87 97.62 97.83 97.50 100.00 96.33 100.00 95.70 97.10 98.37 94.81 97.50 95.12 96.83 96.39 93.75 97.87 96.30 95.83 97.56 98.51 93.83 99.39 97.52 98.01 93.98 89.61 97.64 97.06 95.40 98.02 95.60 98.57 95.24 100.00 98.53 97.92 98.18 98.80 98.36 97.87 97.44 100.00 100.00 K cassette bip2,RI_chr4_481674_487126,RI_chr4_483128_487126,RI_chr4_486609_487126 chr4 - chr4_485367_487126 chr4_485367_485422;chr4_485855_487126 chr4_485423_485854 chr4_485355_485366;chr4_487127_487226 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 98.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 95.65 90.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention mura,RI_chr3R_5373093_5377292,I_chr3R_5375533_5376618,RI_chr3R_5380786_5380850 chr3R - chr3R_5367732_5372519 chr3R_5367731_5367732;chr3R_5372519_5372520 chr3R_5367401_5367731;chr3R_5372520_5372875 27.88 NA NA 38.10 NA NA 25.00 30.77 30.77 22.22 NA NA NA NA NA NA NA NA NA NA NA NA 38.46 NA NA NA 33.33 NA 23.08 NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA 23.53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor MB8.chr3R.pasa.66,CG1091,RI_chr3R_2910490_2910686,RI_chr3R_2911041_2911135,RI_chr3R_2946518_2946663 chr3R - chr3R_2911041_2911135 chr3R_2911080_2911135 chr3R_2911136_2911234;chr3R_2910975_2911040 97.22 100.00 100.00 96.00 96.88 96.77 96.88 98.08 98.15 100.00 96.30 97.87 96.43 92.00 91.67 97.06 91.30 95.45 96.43 95.92 95.45 100.00 97.30 100.00 100.00 100.00 97.30 95.83 100.00 97.22 98.11 95.24 100.00 97.83 96.43 100.00 94.87 97.22 97.62 98.33 96.15 96.23 100.00 100.00 96.30 98.00 92.31 98.11 96.55 96.97 97.56 95.83 96.30 100.00 91.18 100.00 100.00 95.24 K alternative_donor CG9485,I_chr2R_17217595_17218598,I_chr2R_17228865_17228924 chr2R + chr2R_17200289_17201928;chr2R_17200086_17201928 chr2R_17200246_17201928 chr2R_17201929_17202269;chr2R_17200084_17200085 40.00 NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Thor,I_chr2L_3479106_3479184 chr2L + chr2L_3479106_3479184 chr2L_3479105_3479106;chr2L_3479184_3479185 chr2L_3479006_3479105;chr2L_3479185_3479284 93.09 NA 90.91 93.33 NA 90.00 92.86 100.00 93.33 NA NA 100.00 100.00 92.31 91.67 100.00 100.00 88.89 92.31 100.00 NA 88.89 90.00 100.00 NA 90.00 NA 91.67 95.24 NA 90.00 NA NA 92.86 91.67 NA NA NA NA 92.31 90.00 94.74 NA NA 100.00 100.00 93.33 100.00 88.24 100.00 100.00 NA NA 100.00 88.89 NA NA NA K intron_retention CG5757,E_chr2R_13981576_13981669,RI_chr2R_13982037_13982093,RI_chr2R_13982244_13982295 chr2R - chr2R_13981605_13981669 chr2R_13981604_13981605;chr2R_13981669_13981670 chr2R_13981278_13981604;chr2R_13981670_13981769 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention alphaPS4 chr2R + chr2R_11148576_11148634 chr2R_11148575_11148576;chr2R_11148634_11148635 chr2R_11147992_11148575;chr2R_11148635_11148764 0.00 NA NA 5.88 NA NA 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 8.70 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA dlg1,I_chrX_11298230_11299306 chrX + chrX_11284574_11289272 chrX_11284574_11288255 chrX_11284551_11284573 3.30 7.14 7.00 7.63 3.12 5.68 1.00 2.42 4.00 3.17 8.70 5.97 2.25 3.30 1.52 2.63 5.00 2.44 2.88 14.75 1.37 2.22 6.20 8.47 8.43 3.41 2.84 5.94 0.45 2.37 4.12 4.71 6.62 6.12 5.42 8.40 1.94 1.03 3.12 2.48 1.55 4.93 7.95 2.22 11.76 0.77 1.72 1.98 4.50 4.41 2.05 3.53 2.56 6.67 3.74 1.89 2.86 1.27 K jcn_only_AD Dsp1,I_chrX_16231287_16231413 chrX + chrX_16227752_16228333;chrX_16228273_16228333;chrX_16227804_16228333;chrX_16227677_16228333 chrX_16227797_16228333 chrX_16228334_16228446;chrX_16227667_16227676 8.33 NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 8.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N jcn_only_AD CG32512 chrX - chrX_20934443_20934828 chrX_20934443_20934522 chrX_20933620_20934442 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Pak3 chr3R - chr3R_12272857_12276688 chr3R_12272880_12276688 chr3R_12276689_12277858;chr3R_12272468_12272856 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 1.27 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 1.03 3.70 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mre11 chr2L + chr2L_11283754_11283808 chr2L_11283753_11283754;chr2L_11283808_11283809 chr2L_11283593_11283753;chr2L_11283809_11284118 0.00 0.00 0.00 9.76 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 5.00 2.27 0.00 5.56 1.79 0.00 0.00 0.00 3.51 2.04 11.43 0.00 0.00 0.00 0.00 1.41 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Anxb11,I_chrX_16314152_16314405,I_chrX_16314152_16315813 chrX - chrX_16314152_16316028;chrX_16314152_16316276 chrX_16314152_16316199 chrX_16314083_16314151;chrX_16316277_16316298 28.57 50.00 22.22 13.33 11.11 28.57 23.53 25.00 35.29 NA 50.00 15.38 50.00 22.22 30.00 35.29 42.86 22.22 22.22 15.00 50.00 42.86 25.00 37.50 25.00 14.29 50.00 NA 37.50 20.00 38.89 40.00 16.67 33.33 28.57 25.00 62.50 NA 42.86 36.36 NA 40.00 14.29 30.77 25.00 37.50 40.00 28.57 39.13 20.00 27.27 33.33 20.00 NA 23.08 20.00 50.00 18.18 K alternative_donor su(f),I_chrXHet_77570_78035 chrXHet + chrXHet_76913_77097 chrXHet_76934_77097 chrXHet_77098_77373;chrXHet_76611_76912 95.45 92.59 96.30 97.22 94.12 89.47 90.48 91.84 94.64 92.86 95.45 94.74 92.86 91.30 100.00 95.00 95.83 94.44 96.55 97.62 96.15 84.21 100.00 96.00 100.00 87.50 95.45 92.31 93.33 100.00 96.43 100.00 100.00 97.67 86.67 93.75 95.65 92.86 93.33 86.21 78.57 97.96 95.45 100.00 90.00 94.74 100.00 92.86 98.21 100.00 96.30 95.45 92.86 100.00 97.06 95.24 100.00 92.31 K jcn_only_AD su(f),I_chrXHet_77570_78035 chrXHet + chrXHet_77736_78035;chrXHet_77832_78035 chrXHet_77570_78035 chrXHet_78036_78135;chrXHet_77470_77569 1.87 0.00 0.76 3.73 3.26 1.15 0.00 1.97 1.69 4.55 1.11 0.00 0.00 3.80 1.04 2.56 2.53 1.11 2.75 3.39 0.95 18.64 0.71 2.94 2.06 0.89 0.00 3.77 2.13 3.30 7.55 5.88 1.87 1.42 2.22 1.05 0.00 4.35 1.78 11.11 1.41 2.59 1.35 0.00 1.10 3.03 0.93 5.26 1.21 3.25 1.33 1.43 1.92 2.83 1.65 1.94 1.41 5.13 K intron_retention RpL27A,E_chr2L_4457411_4457977,I_chr2L_4458058_4458120 chr2L - chr2L_4458058_4458162 chr2L_4458057_4458058;chr2L_4458162_4458163 chr2L_4457978_4458057;chr2L_4458163_4458220 9.76 10.42 7.14 18.18 14.29 7.69 13.79 17.65 9.76 5.71 NA 10.81 NA 29.41 14.29 28.57 21.43 12.00 25.00 9.76 NA 25.53 7.32 9.52 6.06 12.50 13.04 22.86 7.14 6.06 4.00 18.00 9.26 14.29 11.63 4.69 6.59 7.41 8.54 7.78 8.11 23.68 20.00 4.62 5.06 10.48 7.50 7.41 10.87 8.62 9.52 9.68 7.41 4.35 20.00 7.77 12.99 14.05 K alternative_acceptor CG17002 chr2R + chr2R_2875771_2876087 chr2R_2875771_2876075 chr2R_2875292_2875770;chr2R_2876088_2876423 65.00 71.05 69.23 82.61 80.00 54.17 65.71 73.91 67.92 NA 54.55 57.14 63.64 57.14 67.86 66.67 69.57 68.18 73.33 68.57 71.43 63.41 65.52 70.00 62.50 63.16 61.11 68.97 60.00 64.29 65.00 46.15 60.87 65.38 70.37 62.86 61.40 58.54 66.04 65.00 75.00 70.00 68.75 76.00 58.82 53.49 58.82 63.16 71.43 60.56 79.41 58.82 58.14 62.75 62.50 43.18 64.18 72.00 K multi_cassette pgant5,I_chr2L_5074530_5077534,I_chr2L_5075830_5077076,I_chr2L_5079575_5093241 chr2L - chr2L_5074530_5077534 chr2L_5074530_5075648;chr2L_5075830_5077076;chr2L_5077258_5077534 chr2L_5075649_5075829;chr2L_5077077_5077257 chr2L_5074430_5074529;chr2L_5077535_5077634 85.71 NA NA 75.00 100.00 100.00 83.33 100.00 90.91 66.67 80.00 NA 66.67 85.71 75.00 100.00 100.00 100.00 100.00 88.89 100.00 55.56 85.71 83.33 100.00 100.00 100.00 75.00 80.00 50.00 100.00 100.00 66.67 100.00 100.00 100.00 80.00 80.00 NA 80.00 66.67 90.91 100.00 100.00 80.00 66.67 100.00 83.33 100.00 33.33 90.00 75.00 100.00 75.00 75.00 80.00 100.00 75.00 K alternative_acceptor MB8.chr3R.pasa.66,ref1,RI_chr3R_2904130_2904237,RI_chr3R_2904305_2904543,I_chr3R_2904452_2904543 chr3R - chr3R_2904305_2904543;chr3R_2904130_2904543 chr3R_2904452_2904543 chr3R_2904544_2904643;chr3R_2904030_2904129 0.98 0.96 1.52 2.78 0.00 0.90 3.10 2.27 1.95 0.00 1.96 0.87 2.50 1.10 0.63 5.19 1.00 1.85 2.38 0.96 0.00 5.95 0.98 0.37 0.56 1.30 1.60 2.16 0.99 1.69 0.78 0.82 1.90 2.65 1.42 1.05 0.30 0.39 0.33 0.86 1.09 1.04 1.23 0.59 0.38 0.45 0.87 0.70 0.75 1.01 1.71 0.82 0.00 0.85 1.35 0.81 0.00 0.71 K jcn_only_AA l(1)G0222,I_chrX_17473084_17473137 chrX - chrX_17472801_17473137 chrX_17473084_17473137 chrX_17473138_17473215 9.43 4.76 4.00 1.72 15.62 5.71 13.04 9.43 12.50 NA 11.54 3.39 17.14 4.55 8.33 14.63 0.00 18.18 8.00 13.46 0.00 11.36 0.00 4.65 12.12 6.12 5.71 NA 8.11 3.03 12.12 NA 8.70 10.77 14.81 6.67 2.70 NA 8.82 5.80 8.00 10.29 16.67 3.85 NA 9.52 NA 22.45 6.35 12.90 15.38 15.15 NA NA 14.29 23.81 17.39 16.00 K alternative_donor ZnT63C chr3L + chr3L_3304022_3304601;chr3L_3303837_3304601 chr3L_3303853_3304601 chr3L_3304602_3304665;chr3L_3303742_3303836 87.61 88.52 85.71 90.79 87.10 92.21 88.37 83.65 86.93 91.23 89.39 79.05 79.59 86.96 88.75 92.00 91.67 82.61 93.33 83.94 89.66 81.58 85.32 84.52 84.21 88.33 81.16 81.67 90.48 90.16 85.31 83.72 81.13 86.47 86.21 88.71 80.23 85.48 86.21 90.12 83.61 88.67 88.52 86.73 78.00 88.04 87.69 93.75 88.70 87.93 87.61 90.53 89.13 92.31 90.62 86.96 81.82 91.21 K jcn_only_AD Itp-r83A,RI_chr3R_1358495_1358578 chr3R + chr3R_1358029_1358578 chr3R_1358495_1358578 chr3R_1358579_1358678;chr3R_1357382_1358028 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 1.54 NA 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 4.35 0.00 0.00 3.33 3.90 0.00 0.00 0.00 0.00 9.09 NA 0.00 0.00 NA 3.03 2.04 3.23 0.00 3.39 0.00 3.64 3.39 NA 0.00 4.76 3.64 NA 0.00 0.00 14.81 1.82 NA 3.17 NA 0.00 NA 0.00 0.00 0.00 NA K alternative_acceptor CG5510 chr3R - chr3R_19994963_19995036 chr3R_19994969_19995036 chr3R_19995037_19995105;chr3R_19994900_19994962 100.00 100.00 98.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.35 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 98.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.77 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.53 100.00 K intron_retention CG2126,RI_chr3R_27602105_27602266,REI_chr3R_27602105_27602291,RI_chr3R_27602105_27602308 chr3R - chr3R_27602105_27602166 chr3R_27602104_27602105;chr3R_27602166_27602167 chr3R_27602005_27602104;chr3R_27602167_27602326 6.70 15.38 NA 9.52 NA 0.00 NA 7.69 4.76 NA NA 0.00 NA 15.00 10.53 0.00 NA NA NA 0.00 NA NA 0.00 5.56 22.22 0.00 28.57 NA 10.00 NA 16.67 NA NA 0.00 NA NA NA NA 0.00 7.41 NA 11.11 NA 0.00 0.00 8.00 9.52 NA 7.14 NA 0.00 NA NA 12.50 0.00 6.25 7.14 6.25 K intron_retention AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9003728_9004854 chrX_9003727_9003728;chrX_9004854_9004855 chrX_9003721_9003727;chrX_9004855_9004862 48.53 41.67 41.67 42.86 NA NA 42.11 41.18 29.17 NA NA 30.30 50.00 29.41 38.46 42.86 NA NA 47.06 51.85 NA 77.78 38.10 NA 88.89 55.56 NA NA 63.64 85.71 34.78 63.64 85.71 43.48 90.91 85.71 46.15 NA NA 68.18 77.78 43.48 41.67 50.00 NA NA 66.67 59.09 42.86 NA 61.11 50.00 NA NA 38.46 NA NA 72.73 K intron_retention shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9787177_9787870 chr2R_9787176_9787177;chr2R_9787870_9787871 chr2R_9787108_9787176;chr2R_9787871_9787923 0.00 0.00 0.00 0.00 NA 0.00 3.57 0.00 0.00 0.00 0.00 2.33 1.96 3.23 5.26 2.17 0.00 0.00 0.00 4.17 NA 0.00 0.00 0.00 0.00 2.63 0.00 2.78 0.00 6.98 0.00 NA 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.28 0.00 0.00 NA NA NA 0.00 3.51 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K jcn_only_AD shi,RI_chrX_15786633_15786860,RE_chrX_15793108_15795563 chrX + chrX_15786603_15786860;chrX_15786285_15786860;chrX_15786615_15786860;chrX_15786200_15786860;chrX_15786394_15786860 chrX_15786474_15786860 chrX_15786861_15786960;chrX_15786192_15786199 59.26 63.33 46.88 50.00 52.38 57.14 80.81 64.94 58.18 NA 55.56 53.70 68.63 75.56 67.57 73.91 60.00 NA 49.23 45.83 43.24 NA 86.36 90.00 70.37 50.00 88.89 NA NA 73.17 72.55 NA 47.62 57.95 80.65 72.73 78.26 69.57 NA 54.41 59.26 44.78 55.56 43.90 NA 51.43 NA 42.31 62.86 NA 91.11 80.00 NA NA 58.54 NA NA 18.18 K intron_retention I_chr2L_19388570_19389922,CG17544 chr2L - chr2L_19391784_19391838 chr2L_19391783_19391784;chr2L_19391838_19391839 chr2L_19391438_19391783;chr2L_19391839_19391964 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.99 0.34 0.00 0.00 0.79 0.19 0.00 0.00 0.32 0.38 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.30 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG12206,I_chrX_3367405_3367523 chrX - chrX_3367405_3368410 chrX_3367405_3368173 chrX_3367305_3367404;chrX_3368411_3368553 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 83.33 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 80.00 NA 95.83 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 K intron_retention RI_chr2L_10265562_10265628,CG4953 chr2L + chr2L_10267737_10267798 chr2L_10267736_10267737;chr2L_10267798_10267799 chr2L_10267424_10267736;chr2L_10267799_10267927 2.90 NA NA 8.70 NA NA 6.67 16.67 7.69 NA NA 0.00 NA NA 10.53 0.00 6.67 0.00 NA 2.56 NA 0.00 22.22 0.00 0.00 NA 9.09 0.00 NA NA 9.09 NA NA 0.00 NA NA 5.56 0.00 NA 0.00 NA 4.35 NA 7.69 NA NA NA NA 3.23 NA NA 0.00 0.00 NA 5.56 NA 0.00 NA K alternative_acceptor alpha-Man-I,I_chrX_10218352_10219759,I_chrX_10218390_10219759 chrX - chrX_10218352_10219823 chrX_10218390_10219823 chrX_10219824_10219859;chrX_10218290_10218351 53.85 NA NA NA NA NA NA NA 53.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9390195;chr2R_9389597_9390151;chr2R_9389597_9389907;chr2R_9389597_9389940;chr2R_9389597_9390293;chr2R_9389597_9389751;chr2R_9389597_9390264;chr2R_9389597_9389753 chr2R_9389597_9389757 chr2R_9389497_9389596;chr2R_9390294_9390295 2.94 0.00 7.32 3.39 8.33 6.67 3.70 4.84 2.41 0.00 0.00 3.33 0.00 3.70 5.71 3.85 0.00 2.86 2.56 2.94 0.00 4.35 5.71 0.00 0.00 5.41 9.52 0.00 0.00 0.00 7.50 0.00 8.33 3.28 11.11 3.85 0.00 0.00 8.70 5.26 0.00 1.37 10.53 11.11 0.00 5.56 0.00 0.00 4.55 0.00 9.52 4.17 0.00 0.00 0.00 0.00 3.12 0.00 K jcn_only_AD Rip11,E_chrX_18532733_18533695,RI_chrX_18530353_18530870,RI_chrX_18530742_18530870,RI_chrX_18544139_18544185 chrX - chrX_18530353_18530870 chrX_18530353_18530646 chrX_18530253_18530352;chrX_18530871_18530906 98.74 99.03 99.76 98.16 99.32 96.89 97.44 99.42 98.43 99.17 99.43 96.67 97.29 99.23 98.60 99.76 93.13 99.18 98.49 97.26 99.43 98.24 99.00 98.45 98.41 97.24 97.99 98.60 98.05 99.38 98.43 98.75 99.17 98.91 98.73 98.91 99.14 98.62 98.68 99.48 99.40 98.43 99.57 98.99 98.74 99.02 97.77 99.29 98.60 99.32 98.90 98.36 99.77 98.09 98.51 98.64 99.53 99.73 K intron_retention CG5384 chr2L - chr2L_10312909_10312961 chr2L_10312908_10312909;chr2L_10312961_10312962 chr2L_10312265_10312908;chr2L_10312962_10313027 0.66 0.00 0.00 1.11 0.00 0.93 0.50 0.76 1.20 2.22 0.00 1.10 2.16 0.85 1.69 2.62 0.68 2.25 0.66 3.30 0.00 0.00 0.00 1.96 0.00 4.55 2.68 0.00 3.17 0.00 2.92 0.00 0.40 0.47 2.27 2.60 0.00 0.00 0.88 0.00 1.04 1.47 0.00 0.00 0.00 1.53 0.00 0.00 0.00 1.75 0.00 4.29 0.00 3.03 0.00 1.72 0.00 0.22 K intron_retention CG6218,RI_chr3R_11168116_11168762,I_chr3R_11171570_11171630 chr3R - chr3R_11165612_11168010 chr3R_11165611_11165612;chr3R_11168010_11168011 chr3R_11165401_11165611;chr3R_11168011_11168115 9.09 NA 0.00 NA NA NA NA NA 10.53 NA NA 11.76 NA NA 20.00 NA NA NA NA 9.52 NA NA 10.53 16.67 NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA 0.00 15.00 NA 16.67 NA 7.69 NA 0.00 9.09 NA 10.53 0.00 0.00 NA 0.00 NA NA NA 5.56 NA K intron_retention Pez,E_chr2L_6333987_6336115 chr2L - chr2L_6334039_6334105 chr2L_6334038_6334039;chr2L_6334105_6334106 chr2L_6333862_6334038;chr2L_6334106_6334324 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA 9.09 0.00 0.00 NA NA NA 23.81 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 12.50 0.00 NA 4.35 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA K jcn_only_AD CG1416,I_chr2L_21758100_21758179,I_chr2L_21758143_21758183,I_chr2L_21758143_21758209 chr2L + chr2L_21758100_21758201 chr2L_21758143_21758201 chr2L_21758202_21758279;chr2L_21758043_21758099 100.00 100.00 98.70 100.00 98.15 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 98.81 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 96.92 100.00 98.25 100.00 98.00 NA 100.00 100.00 100.00 99.34 100.00 98.85 98.00 100.00 100.00 97.01 100.00 98.48 100.00 97.85 100.00 100.00 94.64 100.00 100.00 100.00 98.95 98.85 K jcn_only_AD CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3088120_3088191;chr3L_3088139_3088191;chr3L_3088124_3088191 chr3L_3088129_3088191 chr3L_3088192_3088663;chr3L_3087957_3088119 0.34 0.45 0.00 0.00 0.00 0.00 0.44 0.39 0.46 0.00 0.00 0.34 0.00 0.00 1.05 0.53 0.74 0.00 0.00 0.22 0.00 0.00 0.34 0.42 1.96 0.00 0.47 0.00 0.00 0.47 0.58 0.72 0.00 1.18 0.61 1.08 0.00 0.54 0.37 0.00 1.04 0.93 0.00 0.40 0.00 0.79 0.32 0.45 0.63 0.00 0.65 0.81 0.00 0.00 0.46 0.00 0.00 0.00 K intron_retention CG12753,CG14894,RI_chr3R_12268071_12268135,RI_chr3R_12268071_12268141,RI_chr3R_12268071_12268661,Pak3 chr3R - chr3R_12268071_12268124 chr3R_12268070_12268071;chr3R_12268124_12268125 chr3R_12267971_12268070;chr3R_12268125_12268689 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 K jcn_only_AD MAPk-Ak2,RI_chrX_5655618_5656137,I_chrX_5656715_5657427,I_chrX_5656715_5657893,I_chrX_5656715_5657974 chrX - chrX_5656715_5658141;chrX_5656715_5658126 chrX_5656715_5658101 chrX_5656615_5656714;chrX_5658142_5658214 17.39 14.04 15.94 20.11 11.48 19.78 14.97 16.67 19.08 7.00 20.79 19.05 3.26 16.33 14.88 14.36 19.23 17.09 22.76 21.09 25.00 17.65 15.59 19.63 15.65 20.17 27.71 17.58 44.12 25.77 22.16 28.57 25.00 20.35 13.04 22.83 10.24 13.95 17.90 12.61 20.00 19.66 16.00 17.39 20.29 21.21 15.28 16.05 20.61 16.19 17.76 13.33 15.53 16.67 16.94 13.67 14.52 14.86 K alternative_acceptor Updo chr2R + chr2R_5472307_5472432 chr2R_5472307_5472426 chr2R_5472269_5472306;chr2R_5472433_5473176 0.00 0.00 0.00 2.27 0.00 0.00 1.20 0.00 1.15 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.75 0.00 0.00 0.00 0.00 0.00 0.00 1.82 6.25 3.12 0.00 0.00 1.85 0.00 1.23 0.00 0.00 0.00 0.00 1.32 0.00 2.70 0.00 0.00 0.00 0.00 2.22 0.00 0.00 2.63 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2395659 chrX_2388671_2389073;chrX_2389272_2389644;chrX_2389762_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2395659 chrX_2389074_2389271;chrX_2389645_2389761;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664 chrX_2388641_2388670;chrX_2395660_2395759 0.00 NA NA NA NA NA NA NA 0.00 NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA N jcn_only_AD CycG,I_chr3R_27425071_27425214,RE_chr3R_27427953_27436598 chr3R - chr3R_27425071_27426110 chr3R_27425071_27425968 chr3R_27424971_27425070;chr3R_27426111_27426325 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG40228,noncoding_14406,RI_chr3LHet_2190419_2190470 chr3LHet - chr3LHet_2190419_2190561 chr3LHet_2190418_2190419;chr3LHet_2190561_2190562 chr3LHet_2190319_2190418;chr3LHet_2190562_2190570 42.31 56.25 35.29 40.43 NA 47.06 62.16 41.18 60.00 NA NA 38.89 61.11 60.00 60.00 38.16 NA 33.33 34.62 34.69 NA NA 66.67 44.44 46.15 27.78 36.84 60.00 NA NA 27.27 40.00 NA 48.94 34.78 33.33 87.50 NA 45.45 50.00 44.74 44.00 33.33 50.00 26.32 33.33 68.75 28.00 36.67 42.31 47.83 50.00 46.15 31.58 40.00 36.00 53.57 41.86 K alternative_acceptor dom,I_chr2R_17217595_17218598,I_chr2R_17228865_17228924 chr2R + chr2R_17228126_17228198 chr2R_17228126_17228188 chr2R_17225030_17228125;chr2R_17228199_17228581 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 96.97 100.00 100.00 97.78 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG14401,RI_chr2L_20870192_20870512 chr2L + chr2L_20870761_20870837 chr2L_20870761_20870831 chr2L_20870700_20870760;chr2L_20870838_20870900 90.45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 90.91 90.00 NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CycD,I_chrX_15803256_15803313 chrX - chrX_15801625_15801686 chrX_15801625_15801682 chrX_15800855_15801624;chrX_15801687_15801824 2.44 0.00 4.08 2.74 0.00 2.04 1.32 3.37 2.68 0.00 4.26 2.44 4.55 0.00 9.52 3.57 5.00 1.92 5.56 5.61 2.22 9.52 3.57 1.49 2.27 5.00 5.33 10.81 2.70 4.17 0.00 2.13 1.72 2.25 2.56 0.00 1.61 6.82 1.33 4.11 0.00 2.80 0.00 1.75 2.94 1.85 1.69 0.00 5.41 2.56 2.22 4.17 4.17 1.85 1.30 0.00 2.70 1.82 K alternative_donor RpS25,I_chr3R_7041333_7041414,I_chr3R_7041347_7041413,I_chr3R_7041347_7041556,RI_chr3R_7044164_7044221 chr3R - chr3R_7041347_7041556;chr3R_7041347_7041414 chr3R_7041347_7041471 chr3R_7041267_7041346;chr3R_7041557_7041598 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.04 0.00 0.00 0.02 0.00 0.00 0.04 0.00 0.00 0.02 0.03 0.00 0.00 0.02 0.03 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.02 0.01 K intron_retention CG8159,F_chr3R_4553688_4553752 chr3R + chr3R_4553694_4553752 chr3R_4553693_4553694;chr3R_4553752_4553753 chr3R_4553448_4553693;chr3R_4553753_4553852 0.00 NA 0.00 0.00 NA NA 0.00 0.00 10.53 NA NA 6.67 NA NA NA 0.00 NA NA NA 4.55 NA NA NA NA NA NA NA NA NA NA NA NA NA 19.05 0.00 NA 10.53 NA 0.00 9.09 NA 4.55 NA NA NA 0.00 NA NA NA 9.09 NA NA NA 0.00 NA 17.65 0.00 NA K intron_retention Ide,I_chr3L_20366301_20366354,I_chr3L_20368443_20368519 chr3L - chr3L_20365120_20365179 chr3L_20365119_20365120;chr3L_20365179_20365180 chr3L_20364804_20365119;chr3L_20365180_20365389 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG2765,RI_chr2R_20849027_20852094,I_chr2R_20849271_20849626,I_chr2R_20849271_20850005,E_chr2R_20849271_20850693,E_chr2R_20849271_20851166,E_chr2R_20849271_20852090,E_chr2R_20851190_20852094 chr2R - chr2R_20849271_20850504 chr2R_20849270_20849271;chr2R_20850504_20850505 chr2R_20849171_20849270;chr2R_20850505_20850754 88.89 NA NA NA NA NA 83.33 NA 61.11 NA NA 90.00 NA NA 80.00 90.91 NA NA NA 92.31 NA 81.25 92.31 NA NA NA 88.89 NA NA NA NA NA NA 88.89 NA NA 87.50 NA NA 91.67 NA 90.91 NA NA NA NA NA NA NA NA 88.89 NA NA NA 80.00 NA NA NA K jcn_only_AD CkIIbeta,I_chrX_11686847_11687475,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11687025_11687475;chrX_11686979_11687475;chrX_11686948_11687475 chrX_11687313_11687475 chrX_11687476_11687551;chrX_11686929_11686947 80.00 72.92 74.00 64.86 84.21 75.61 75.00 71.05 66.67 NA 85.71 74.36 60.98 65.79 77.08 93.42 65.85 76.67 68.42 57.35 77.42 88.10 80.77 82.93 81.82 84.38 89.80 NA 96.00 82.50 80.33 80.00 89.74 73.97 86.21 92.59 80.00 86.21 89.66 89.36 95.74 73.03 73.33 59.09 86.67 85.45 73.53 88.64 72.92 86.21 78.05 87.50 73.53 95.45 64.00 71.43 83.02 79.27 K intron_retention CG16940,I_chr3L_212740_212843,I_chr3L_212783_212843,noncoding_9585,Kaz1-ORFA_Kaz1-ORFB chr3L + chr3L_212783_212843 chr3L_212782_212783;chr3L_212843_212844 chr3L_212761_212782;chr3L_212844_212943 100.00 100.00 100.00 100.00 100.00 93.33 88.24 100.00 90.91 NA 100.00 96.43 100.00 100.00 100.00 96.43 100.00 92.86 93.33 96.77 92.31 96.88 96.43 90.91 100.00 94.12 100.00 100.00 93.33 100.00 90.48 NA 100.00 95.65 94.12 100.00 96.00 92.86 95.00 96.55 NA 89.29 100.00 100.00 NA 100.00 100.00 100.00 100.00 93.33 95.24 90.91 100.00 NA 100.00 100.00 100.00 NA K alternative_donor CG11880,I_chr3R_24949827_24951052,CE_chr3R_24962426_24962797 chr3R + chr3R_24949212_24949522;chr3R_24949222_24949522 chr3R_24949202_24949522 chr3R_24949523_24949826;chr3R_24949179_24949201 86.64 80.65 84.44 80.52 90.91 85.71 88.66 88.89 89.86 85.00 87.80 85.44 85.71 88.46 87.50 88.10 88.33 89.29 92.68 80.00 82.05 92.59 86.96 83.33 86.96 85.45 75.00 96.67 87.50 75.00 85.00 90.00 92.86 88.89 85.71 90.91 91.43 NA 85.19 83.33 85.00 91.23 89.29 83.33 85.71 91.18 81.48 92.00 86.32 80.00 90.00 76.19 93.33 87.50 83.87 77.78 77.78 83.33 K intron_retention sxc,I_chr2R_1203985_1205289,I_chr2R_1208121_1213310,I_chr2R_1213177_1213308 chr2R + chr2R_1195158_1203773 chr2R_1195157_1195158;chr2R_1203773_1203774 chr2R_1194983_1195157;chr2R_1203774_1203984 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette pbl chr3L - chr3L_7891955_7894714 chr3L_7891955_7893179;chr3L_7894554_7894714 chr3L_7893180_7894553 chr3L_7891823_7891954;chr3L_7894715_7894964 34.69 30.30 24.66 32.88 26.09 26.79 42.86 24.72 30.83 61.36 29.63 45.05 35.00 33.33 39.29 38.16 24.49 34.04 37.50 31.72 21.82 52.54 27.96 32.89 34.69 33.33 36.62 67.65 47.37 47.14 37.21 52.94 49.53 36.36 41.67 33.33 26.92 26.03 27.66 57.50 52.94 29.03 35.90 38.98 48.84 37.78 28.57 61.36 29.09 35.09 35.53 35.29 25.64 29.03 33.33 25.00 26.47 38.33 K jcn_only_AA SWAP,RI_chrX_936466_936762,I_chrX_936466_936835,RI_chrX_936919_937245,RI_chrX_938935_938985,I_chrX_941459_982652 chrX + chrX_936466_936762;chrX_936466_936966 chrX_936466_936835 chrX_936366_936465;chrX_936967_937018 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA 25.93 NA NA NA NA NA NA NA NA NA NA K intron_retention Gs1l,I_chr2L_4456517_4456723,I_chr2L_4458058_4458120 chr2L - chr2L_4456521_4456725 chr2L_4456520_4456521;chr2L_4456725_4456726 chr2L_4456386_4456520;chr2L_4456726_4456801 43.91 NA NA 56.25 NA NA NA NA 20.00 NA NA NA NA NA NA NA NA 72.73 NA 41.67 NA NA NA NA NA NA 66.67 70.00 75.00 NA NA NA 33.33 15.38 NA 64.71 NA NA 60.00 50.00 21.43 41.67 NA 41.67 41.67 NA NA 28.57 70.00 NA NA NA NA NA NA 46.15 NA 37.50 K jcn_only_AD wge chr3R - chr3R_18543064_18545592 chr3R_18543064_18543161 chr3R_18542929_18543063;chr3R_18545593_18545739 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 1.16 0.00 0.00 0.00 0.00 0.00 0.00 6.82 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 2.00 0.00 1.64 3.85 4.17 0.00 0.81 0.00 2.04 0.00 5.26 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 K jcn_only_AA CG3883 chr2L - chr2L_815413_815474 chr2L_815422_815474 chr2L_815475_815878;chr2L_815275_815412 93.50 NA NA NA NA NA NA NA NA NA NA 95.00 NA NA NA NA NA NA NA NA NA NA 92.00 90.91 NA NA NA NA 85.71 90.00 NA NA NA NA NA NA 100.00 84.00 96.15 95.24 NA NA NA 95.00 NA NA NA 96.67 80.95 NA 95.45 NA NA NA NA NA NA 88.46 N intron_retention CG31431 chr3R + chr3R_17697863_17697989 chr3R_17697862_17697863;chr3R_17697989_17697990 chr3R_17697704_17697862;chr3R_17697990_17700603 100.00 NA NA 100.00 NA NA 46.58 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA NA NA NA 100.00 NA NA 100.00 NA 50.00 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 32.00 100.00 NA NA NA 100.00 NA NA 60.87 NA 100.00 NA NA NA NA NA NA NA K multi_cassette Pax,RI_chr2L_19401373_19409403,I_chr2L_19404678_19404749,RI_chr2L_19404683_19426205,RI_chr2L_19404823_19409403,I_chr2L_19411712_19414411,EI_chr2L_19411720_19414380,I_chr2L_19411720_19414407,I_chr2L_19419985_19423267,I_chr2L_19419985_19423278,I_chr2L_19419985_19423414,I_chr2L_19420081_19423267,I_chr2L_19420081_19423278 chr2L - chr2L_19404683_19426205 chr2L_19404683_19409403;chr2L_19409550_19409611;chr2L_19409704_19409768;chr2L_19409911_19410247;chr2L_19410414_19410479;chr2L_19410644_19426205 chr2L_19409404_19409549;chr2L_19409612_19409703;chr2L_19409769_19409910;chr2L_19410248_19410413;chr2L_19410480_19410643 chr2L_19404583_19404682;chr2L_19426206_19426305 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.32 100.00 100.00 100.00 98.70 100.00 99.17 100.00 100.00 99.47 99.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.58 100.00 100.00 100.00 99.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Cdc37,CG12020 chr3L + chr3L_1796838_1796910 chr3L_1796838_1796901 chr3L_1796769_1796837;chr3L_1796911_1796976 100.00 100.00 100.00 100.00 100.00 98.41 100.00 100.00 100.00 100.00 100.00 99.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.41 100.00 100.00 99.15 99.07 100.00 100.00 98.91 100.00 98.96 100.00 100.00 100.00 99.19 99.17 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.07 100.00 100.00 100.00 100.00 100.00 99.07 100.00 100.00 100.00 99.17 K intron_retention snRNP2 chr3R - chr3R_2171359_2171492 chr3R_2171358_2171359;chr3R_2171492_2171493 chr3R_2171123_2171358;chr3R_2171493_2171621 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG18476,I_chr3R_7504949_7505288 chr3R - chr3R_7501454_7501524 chr3R_7501453_7501454;chr3R_7501524_7501525 chr3R_7500625_7501453;chr3R_7501525_7502106 0.00 0.00 0.00 3.33 NA NA 0.00 0.00 5.88 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 5.26 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 K jcn_only_AD fws,CG6453 chr2L - chr2L_17480920_17480968;chr2L_17480920_17481149;chr2L_17480920_17480983 chr2L_17480920_17480972 chr2L_17480825_17480919;chr2L_17481150_17481199 42.22 35.00 NA NA 25.93 NA 42.22 37.84 42.22 NA NA 48.15 NA NA 45.45 NA NA NA 45.00 45.16 NA NA NA NA NA NA NA NA NA NA NA NA NA 36.84 NA NA 54.55 NA NA NA NA 45.71 NA NA NA NA NA NA 24.14 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG16947,I_chr2L_6459995_6460559,I_chr2L_6460482_6460559,I_chr2L_6464140_6465326 chr2L - chr2L_6459995_6460559 chr2L_6459995_6460322 chr2L_6459895_6459994;chr2L_6460560_6460659 98.87 100.00 NA 100.00 NA NA NA NA 93.75 NA NA 95.83 NA NA 100.00 NA NA NA NA 97.73 NA NA NA NA NA NA NA NA NA NA NA NA 92.00 100.00 NA NA 95.65 NA 97.22 100.00 NA 100.00 NA 100.00 95.00 NA 100.00 96.00 95.83 NA 100.00 NA 100.00 NA NA NA 96.00 NA K jcn_only_AD Hr39,I_chr2L_21256047_21256260 chr2L + chr2L_21237385_21238280;chr2L_21237421_21238280;chr2L_21237364_21238280;chr2L_21237397_21238280;chr2L_21237405_21238280 chr2L_21237347_21238280 chr2L_21238281_21238529;chr2L_21237247_21237346 54.55 NA NA 31.43 NA NA 35.00 41.94 63.41 NA NA 45.71 56.52 NA NA 71.43 NA NA NA 55.56 NA NA 67.65 45.00 NA NA 59.38 NA NA NA 54.55 NA NA 41.67 54.55 NA NA NA NA 76.47 NA 60.00 NA 75.00 NA NA NA 46.67 47.62 NA 37.50 NA NA NA 37.50 NA NA NA K jcn_only_AA csul chr2R + chr2R_12152628_12152704;chr2R_12152628_12152671 chr2R_12152628_12152686 chr2R_12152244_12152627;chr2R_12152705_12153131 56.76 52.63 62.07 56.38 58.93 56.14 46.67 59.55 60.29 46.15 56.76 54.17 50.00 59.46 60.61 48.08 48.65 69.57 52.46 60.75 59.57 54.10 74.29 63.33 38.24 43.86 77.61 65.88 49.18 68.00 50.91 57.14 66.67 52.94 59.26 61.54 63.92 59.09 47.13 55.75 45.68 55.96 45.45 50.85 56.52 51.67 64.71 56.86 47.92 60.47 53.42 58.97 64.91 51.85 54.39 65.00 60.26 60.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2393243;chrX_2393712_2395659 chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2393244_2393711 chrX_2387149_2387248;chrX_2395660_2395759 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 1.12 0.00 0.00 0.00 0.00 0.00 0.00 1.39 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AA Zyx102EF,I_chr4_1079131_1080044,I_chr4_1079946_1080044,RI_chr4_1079959_1080044,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1079978_1080044;chr4_1079915_1080044 chr4_1079959_1080044 chr4_1080045_1080072;chr4_1079859_1079914 3.57 0.00 10.34 6.98 NA 0.00 7.78 3.16 2.22 NA 6.06 8.16 2.86 2.70 6.45 4.44 0.00 3.70 5.36 4.92 5.00 NA 0.00 NA 3.85 12.50 0.00 NA NA NA 2.50 NA NA 3.45 4.35 8.00 0.00 NA NA 0.00 NA 5.71 2.38 3.70 NA 4.17 0.00 NA 0.00 0.00 0.00 NA NA NA 4.76 NA 3.57 0.00 K jcn_only_AA Got2,I_chr2L_1985901_1985945 chr2L - chr2L_1985884_1985945 chr2L_1985901_1985945 chr2L_1985946_1986045;chr2L_1985801_1985883 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.74 0.00 0.53 0.00 0.52 0.27 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.17 0.24 0.00 0.00 0.00 0.18 0.00 0.00 0.35 0.29 0.48 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17760 chr2R + chr2R_8515807_8515943 chr2R_8515806_8515807;chr2R_8515943_8515944 chr2R_8515699_8515806;chr2R_8515944_8516168 0.00 0.00 0.00 0.00 0.00 0.00 0.77 1.50 1.64 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 1.50 0.00 NA 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG11880,I_chr3R_24949827_24951052,CE_chr3R_24962426_24962797 chr3R + chr3R_24949202_24949522;chr3R_24949212_24949522 chr3R_24949222_24949522 chr3R_24949523_24949826;chr3R_24949179_24949201 0.00 0.00 0.00 5.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7497 chr3L + chr3L_17629986_17630045 chr3L_17629985_17629986;chr3L_17630045_17630046 chr3L_17629793_17629985;chr3L_17630046_17630384 46.15 NA NA 46.15 NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA 1.82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG9776,CG9772 chr3R - chr3R_161668_161730 chr3R_161667_161668;chr3R_161730_161731 chr3R_161571_161667;chr3R_161731_161797 0.00 0.00 0.00 1.61 0.00 0.00 0.00 1.28 0.00 0.00 0.00 2.26 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.43 0.00 2.11 0.00 0.00 0.00 0.00 2.44 1.49 0.00 0.00 0.76 0.00 0.00 0.00 3.03 0.00 0.00 2.40 0.00 1.23 0.00 0.00 1.27 0.00 1.10 0.00 1.37 0.00 1.22 0.00 1.84 0.00 0.00 1.05 0.00 0.00 0.00 0.00 K intron_retention Nop60B,AT25722,snoRNA:Me28S-G1083b,F_chr2R_20073291_20073744 chr2R + chr2R_20072575_20072761 chr2R_20072574_20072575;chr2R_20072761_20072762 chr2R_20072529_20072574;chr2R_20072762_20072812 0.00 NA 0.00 0.00 NA NA 2.17 0.00 3.03 6.67 NA 4.26 0.00 0.00 0.00 4.08 0.00 0.00 3.57 6.67 NA NA 0.00 6.67 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 20.69 0.00 5.56 NA NA NA NA 4.00 15.00 4.44 0.00 0.00 4.76 0.00 0.00 13.33 1.61 0.00 6.67 0.00 2.33 0.00 0.00 3.85 0.00 5.13 K intron_retention CG7956,CE_chr3R_17350242_17350304 chr3R + chr3R_17350372_17351248 chr3R_17350371_17350372;chr3R_17351248_17351249 chr3R_17350312_17350371;chr3R_17351249_17351485 0.00 0.00 0.94 0.00 1.69 0.00 2.02 0.00 4.08 0.00 0.00 2.04 0.00 0.00 1.11 0.00 1.69 1.69 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.97 2.38 2.60 0.79 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 2.63 0.00 4.71 2.03 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3774,I_chrX_6114220_6114292 chrX + chrX_6114220_6114292 chrX_6114219_6114220;chrX_6114292_6114293 chrX_6114120_6114219;chrX_6114293_6114392 98.18 100.00 96.43 98.15 100.00 96.77 97.06 100.00 94.74 92.31 100.00 97.62 95.24 95.45 91.18 100.00 96.43 96.97 97.14 98.53 100.00 100.00 100.00 100.00 100.00 94.44 96.77 100.00 95.45 100.00 97.06 100.00 98.18 97.78 100.00 94.74 100.00 100.00 100.00 97.14 100.00 97.87 95.83 100.00 89.29 100.00 100.00 97.62 96.00 100.00 96.15 100.00 95.00 100.00 100.00 93.75 100.00 100.00 K jcn_only_AA CycA chr3L - chr3L_11821782_11824826 chr3L_11821785_11824826 chr3L_11824827_11825082;chr3L_11821561_11821781 100.00 100.00 100.00 100.00 100.00 99.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.07 98.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 99.35 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.86 100.00 100.00 100.00 98.36 100.00 100.00 K intron_retention Nc73EF,F_chr3L_16952838_16955936,CE_chr3L_16952842_16955936,I_chr3L_16952985_16955434,I_chr3L_16953768_16954599 chr3L + chr3L_16954703_16955434 chr3L_16954702_16954703;chr3L_16955434_16955435 chr3L_16954600_16954702;chr3L_16955435_16955513 3.30 3.85 5.26 4.44 0.00 5.71 10.67 7.35 6.60 0.00 5.41 1.12 2.13 5.88 4.44 4.44 5.13 3.23 2.04 2.63 6.25 6.35 3.37 2.74 2.04 5.26 8.70 3.12 0.00 0.00 2.56 14.29 0.00 8.33 0.00 0.00 3.61 3.17 0.00 5.63 NA 4.23 0.00 2.44 0.00 6.90 10.34 NA 9.23 0.00 1.37 1.79 5.88 6.90 2.56 1.89 0.00 NA K jcn_only_AD kuz,E_chr2L_13550294_13551106,I_chr2L_13550421_13550984,CE_chr2L_13558833_13594255,I_chr2L_13636762_13637287 chr2L + chr2L_13550294_13551141 chr2L_13550421_13551141 chr2L_13551142_13551156;chr2L_13550287_13550293 25.00 NA NA 37.74 NA 13.04 40.00 52.63 42.86 NA NA 18.06 33.33 25.71 18.18 17.24 NA 30.00 8.33 2.13 NA NA NA NA NA 10.00 NA NA 25.00 NA 14.71 NA 32.26 44.44 22.58 NA NA NA NA 4.55 NA 14.81 NA NA NA 31.82 NA 30.23 17.91 NA NA NA NA NA 26.19 NA NA NA K multi_cassette Pld,RI_chr2R_2138358_2141112 chr2R + chr2R_2138358_2141112 chr2R_2138358_2138580;chr2R_2139358_2139442;chr2R_2140122_2140184;chr2R_2140678_2140734;chr2R_2140861_2141112 chr2R_2138581_2139357;chr2R_2139443_2140121;chr2R_2140185_2140677;chr2R_2140735_2140860 chr2R_2138258_2138357;chr2R_2141113_2141212 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 91.67 100.00 93.75 97.22 100.00 96.30 100.00 100.00 100.00 90.91 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 92.86 96.43 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 94.44 100.00 92.31 94.44 K alternative_donor larp,F_chr3R_24151542_24153876,I_chr3R_24160430_24160932,I_chr3R_24160430_24160971,RI_chr3R_24160430_24161527 chr3R - chr3R_24160430_24161729;chr3R_24160430_24160971;chr3R_24160430_24160975;chr3R_24160430_24160979;chr3R_24160430_24161939;chr3R_24160430_24161527 chr3R_24160430_24160932 chr3R_24160330_24160429;chr3R_24161940_24162125 1.88 2.56 0.00 1.38 1.67 1.35 1.31 2.33 1.38 4.17 3.28 1.70 1.32 1.12 2.27 1.32 0.00 1.19 1.09 1.88 1.47 2.97 2.63 2.02 1.75 5.41 3.09 1.71 4.00 3.80 1.04 3.45 3.95 1.88 3.03 1.32 3.16 1.45 1.00 5.43 1.92 1.10 1.56 5.48 4.55 5.00 1.47 4.13 3.16 0.00 2.94 2.67 1.67 0.00 0.96 2.17 4.26 2.06 K cassette Vrp1,I_chr2R_17997529_17997692 chr2R - chr2R_17997866_17998832 chr2R_17997866_17998050;chr2R_17998444_17998832 chr2R_17998051_17998443 chr2R_17997711_17997865;chr2R_17998833_17999014 100.00 98.85 100.00 100.00 100.00 98.00 98.48 98.73 100.00 100.00 97.50 98.00 100.00 100.00 98.08 100.00 100.00 98.04 98.11 100.00 97.37 91.97 99.28 100.00 100.00 100.00 100.00 100.00 100.00 98.65 98.11 97.78 98.75 100.00 100.00 100.00 99.30 100.00 100.00 98.26 100.00 100.00 100.00 100.00 98.48 100.00 98.65 98.55 99.03 98.97 99.20 100.00 98.41 100.00 100.00 98.46 98.48 98.36 K alternative_acceptor Rrp6,I_chr3R_10711208_10711300,I_chr3R_10711189_10711299 chr3R - chr3R_10711189_10711300 chr3R_10711208_10711300 chr3R_10711301_10711399;chr3R_10711108_10711188 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32066 chr3L - chr3L_10634566_10634631 chr3L_10634565_10634566;chr3L_10634631_10634632 chr3L_10633393_10634565;chr3L_10634632_10634894 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.63 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25318474_25319136;chr3R_25318474_25319163;chr3R_25318474_25319142;chr3R_25318474_25318925;chr3R_25318474_25319093;chr3R_25318474_25319004;chr3R_25318474_25319167 chr3R_25318474_25318971 chr3R_25318374_25318473;chr3R_25319168_25319224 5.43 2.02 5.43 9.26 2.73 5.02 13.76 9.89 6.15 6.12 10.34 6.06 4.76 5.34 8.11 10.30 8.37 3.46 5.73 7.64 5.60 2.83 5.07 3.67 2.41 4.18 7.72 5.80 7.05 3.97 10.05 7.66 12.30 6.79 8.70 9.63 3.05 0.40 2.96 5.63 10.77 5.51 4.09 2.75 5.13 5.91 5.01 7.11 4.74 4.08 2.51 3.02 3.42 3.26 6.87 1.49 4.29 4.19 K intron_retention sd,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15717715_15717784 chrX_15717714_15717715;chrX_15717784_15717785 chrX_15717652_15717714;chrX_15717785_15717957 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 6.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr2R_7171366_7171418,fbl6,dare chr2R - chr2R_7176066_7176897 chr2R_7176065_7176066;chr2R_7176897_7176898 chr2R_7175150_7176065;chr2R_7176898_7177256 18.90 20.00 33.33 18.52 NA NA 21.74 23.08 11.76 NA NA 26.09 13.04 NA 18.75 22.22 14.29 14.29 20.00 12.12 NA 33.33 21.05 12.50 NA 13.33 19.05 NA NA 19.05 17.65 NA 18.75 14.81 21.05 35.29 23.81 NA 25.00 15.79 NA 16.13 NA NA NA NA 25.00 NA 13.79 NA 31.58 15.38 NA NA 7.14 NA NA NA K intron_retention CG1951 chr3R + chr3R_24853192_24853258 chr3R_24853191_24853192;chr3R_24853258_24853259 chr3R_24852969_24853191;chr3R_24853259_24853858 3.77 4.35 3.39 4.76 5.41 1.82 6.06 0.00 3.64 0.00 0.00 3.26 0.00 6.98 5.88 1.92 0.00 6.67 0.00 5.84 4.55 4.65 3.80 2.86 0.00 0.00 9.23 13.33 5.68 7.69 5.08 0.00 5.11 4.11 4.76 3.95 5.00 3.12 6.38 5.71 1.89 3.74 5.00 1.47 3.77 0.00 0.00 4.20 4.00 0.00 7.02 0.00 4.44 0.00 3.28 0.00 3.12 1.25 K intron_retention CG10948 chr3L - chr3L_12838769_12838833 chr3L_12838768_12838769;chr3L_12838833_12838834 chr3L_12838157_12838768;chr3L_12838834_12838953 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention AT25722,CG3376 chr2R + chr2R_20149632_20149686 chr2R_20149631_20149632;chr2R_20149686_20149687 chr2R_20149449_20149631;chr2R_20149687_20151004 0.00 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.93 0.00 5.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32163 chr3L + chr3L_16580557_16580609 chr3L_16580556_16580557;chr3L_16580609_16580610 chr3L_16580506_16580556;chr3L_16580610_16580996 100.00 94.12 100.00 91.67 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 94.44 100.00 94.12 98.21 100.00 100.00 100.00 97.50 94.74 86.67 100.00 95.83 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 91.67 97.14 90.00 100.00 100.00 100.00 100.00 96.55 NA 96.77 100.00 100.00 100.00 96.15 96.43 100.00 100.00 100.00 88.24 100.00 94.74 100.00 96.88 100.00 96.77 100.00 K alternative_donor CG6133,Tip60 chrX - chrX_4009248_4009352 chrX_4009248_4009329 chrX_4009035_4009247;chrX_4009353_4010577 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG12768,I_chr3L_22903673_22904689,CEF_chr3L_22903677_22904938,I_chr3L_22913779_22916461 chr3L + chr3L_22904856_22904933 chr3L_22904855_22904856;chr3L_22904933_22904934 chr3L_22904702_22904855;chr3L_22904934_22905333 5.88 NA NA 0.00 NA NA NA NA 14.29 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA 5.88 NA 14.29 NA NA NA NA NA NA 5.26 NA NA NA NA NA NA NA NA NA K intron_retention CG3071 chrX + chrX_2157022_2157089 chrX_2157021_2157022;chrX_2157089_2157090 chrX_2156925_2157021;chrX_2157090_2158975 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention blow,RI_chr2R_3470434_3470776 chr2R - chr2R_3472844_3474436 chr2R_3472843_3472844;chr2R_3474436_3474437 chr2R_3472561_3472843;chr2R_3474437_3474581 95.24 90.00 100.00 100.00 NA 88.89 92.86 94.74 100.00 100.00 87.50 94.74 NA 90.91 100.00 100.00 NA 100.00 90.00 88.24 NA 96.43 94.74 95.45 91.67 100.00 100.00 100.00 95.83 93.33 73.33 90.00 96.30 93.75 100.00 100.00 100.00 94.44 94.12 95.24 86.36 95.00 NA 100.00 100.00 89.47 100.00 88.89 94.44 94.44 95.24 100.00 100.00 100.00 100.00 100.00 93.75 90.91 K jcn_only_AD spt4,I_chr2R_8521473_8521540 chr2R + chr2R_8521473_8521540 chr2R_8521475_8521540 chr2R_8521541_8521640;chr2R_8521373_8521472 99.41 99.21 99.14 99.42 100.00 100.00 100.00 99.31 98.11 100.00 100.00 98.42 98.86 100.00 99.06 100.00 100.00 100.00 100.00 98.92 100.00 100.00 98.45 99.22 99.05 99.28 99.21 100.00 98.55 98.89 100.00 100.00 100.00 99.32 97.53 98.89 100.00 98.94 100.00 100.00 98.98 99.42 100.00 98.77 100.00 99.41 97.86 98.48 99.41 100.00 100.00 100.00 99.15 99.39 100.00 98.82 99.38 100.00 K alternative_acceptor gw,I_chr4_679135_681671 chr4 - chr4_673460_673526 chr4_673469_673526 chr4_673527_673677;chr4_673272_673459 44.52 38.82 51.69 46.78 43.86 46.27 44.52 41.18 42.93 41.18 39.29 41.51 41.30 43.02 51.09 48.46 47.83 48.39 44.34 46.77 40.43 61.11 53.06 48.48 42.11 43.64 47.50 41.46 45.83 46.30 43.65 47.62 48.61 45.05 43.40 50.00 50.00 42.37 43.75 38.58 34.55 50.00 43.90 50.85 38.78 45.45 43.33 45.71 41.21 43.84 45.13 41.43 47.17 51.92 46.58 42.86 50.52 32.77 K intron_retention lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6394546_6419543,I_chr2R_6404486_6419543,R_chr2R_6408775_6419537,I_chr2R_6409616_6419543,I_chr2R_6419625_6419686,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6414725_6419543 chr2R_6414724_6414725;chr2R_6419543_6419544 chr2R_6414571_6414724;chr2R_6419544_6419624 65.94 52.63 84.21 100.00 70.59 71.43 88.57 84.62 71.43 66.67 65.22 63.16 65.22 86.36 58.62 81.40 82.35 66.67 72.73 43.24 58.82 61.54 80.00 73.68 72.22 88.00 71.43 81.48 60.00 47.37 60.00 42.11 62.50 71.88 65.00 63.64 66.67 70.00 58.62 67.50 41.18 76.32 65.00 65.00 35.29 42.11 41.67 72.00 84.21 NA 69.23 63.16 66.67 41.67 60.00 42.11 46.15 55.56 K intron_retention REI_chr3L_3042451_3043440,Jafrac2,I_chr3L_3042851_3043044,I_chr3L_3043202_3043271 chr3L + chr3L_3043206_3043271 chr3L_3043205_3043206;chr3L_3043271_3043272 chr3L_3043138_3043205;chr3L_3043272_3043339 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 1.39 1.06 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 3.05 1.12 0.00 0.00 1.56 0.00 2.50 0.00 0.00 0.00 0.00 0.00 1.05 0.00 1.85 0.53 0.00 0.79 0.00 0.00 0.00 2.86 0.00 1.27 0.00 0.00 0.58 0.72 0.00 0.00 0.00 0.00 K intron_retention Smg6 chr3R - chr3R_20858383_20858448 chr3R_20858382_20858383;chr3R_20858448_20858449 chr3R_20857933_20858382;chr3R_20858449_20858819 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K alternative_donor mael chr3L + chr3L_22717513_22717583;chr3L_22717501_22717583 chr3L_22717525_22717583 chr3L_22717584_22717785;chr3L_22717334_22717500 54.77 57.14 70.83 46.51 54.55 56.25 75.00 55.88 46.15 50.00 57.14 51.11 46.67 72.73 50.00 52.94 63.64 75.00 54.17 63.41 50.00 57.14 50.00 52.94 NA 61.90 NA 57.14 50.00 57.14 56.52 47.83 64.29 45.95 60.00 46.67 63.64 58.33 60.00 41.94 47.62 47.22 47.37 NA 53.33 60.00 NA 50.00 45.24 NA 45.00 62.50 60.00 57.14 55.00 50.00 53.85 63.16 K jcn_only_AA I_chr2R_2539027_2539493,Opbp chr2R + chr2R_2540827_2540888 chr2R_2540827_2540877 chr2R_2540768_2540826;chr2R_2540889_2541565 93.94 NA 95.83 93.94 NA NA 95.65 96.55 94.59 NA NA 86.67 NA NA 95.24 100.00 NA 82.61 NA 91.49 NA NA 85.71 90.91 NA NA NA NA 95.45 NA 92.31 NA NA 100.00 NA NA 87.10 NA NA 92.59 NA 97.22 NA NA 91.30 NA NA NA 91.30 95.24 NA NA NA NA 100.00 NA 90.00 NA K intron_retention Acph-1,I_chr3R_25820814_25820871 chr3R - chr3R_25818650_25818707 chr3R_25818649_25818650;chr3R_25818707_25818708 chr3R_25818551_25818649;chr3R_25818708_25818903 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 4.00 0.00 4.62 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 4.44 0.00 1.59 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor PhKgamma,I_chrX_11590179_11590249,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11590345_11590435;chrX_11590179_11590435 chrX_11589973_11590435 chrX_11590436_11590535;chrX_11589857_11589972 52.94 75.00 58.33 52.94 75.00 77.78 50.00 47.06 58.62 53.85 20.00 50.00 50.00 44.44 53.85 69.23 77.78 62.50 25.00 50.00 87.50 23.33 63.64 67.86 64.29 27.27 50.00 57.89 37.50 33.33 46.67 50.00 39.13 38.46 53.85 38.89 61.90 72.73 52.94 44.44 33.33 69.70 40.00 31.58 44.44 50.00 66.67 31.03 47.06 80.95 57.14 71.43 66.67 50.00 53.85 69.23 71.43 50.00 K jcn_only_AD ferrochelatase chr3R - chr3R_27636663_27636769 chr3R_27636663_27636721 chr3R_27636594_27636662;chr3R_27636770_27636835 100.00 99.70 100.00 100.00 100.00 100.00 100.00 99.62 100.00 99.01 99.12 100.00 100.00 99.30 100.00 100.00 100.00 99.51 100.00 100.00 100.00 99.83 99.62 99.78 100.00 100.00 99.65 99.67 99.62 99.75 99.64 100.00 99.54 100.00 99.63 100.00 99.82 99.73 99.66 99.81 99.51 99.73 100.00 100.00 99.26 100.00 99.49 100.00 98.91 100.00 100.00 100.00 100.00 99.75 99.53 100.00 100.00 100.00 K cassette CG40470,E_chr3L_23883307_23927514 chr3L - chr3L_23883307_23927514 chr3L_23883307_23905377;chr3L_23905556_23927514 chr3L_23905378_23905555 chr3L_23883227_23883306;chr3L_23927515_23927524 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention I_chr3R_25875159_25875219,CG34317,CG7950,noncoding_20085,F_chr3R_25908044_25945850 chr3R + chr3R_25882757_25882837 chr3R_25882756_25882757;chr3R_25882837_25882838 chr3R_25882665_25882756;chr3R_25882838_25883826 10.53 NA 10.53 15.38 NA 15.38 17.65 12.00 22.22 NA NA 9.09 NA NA 25.00 0.00 NA NA 0.00 12.50 NA NA NA NA NA NA NA NA NA NA 10.53 NA 6.67 14.29 14.29 NA NA NA NA 8.33 20.00 9.09 NA NA 10.00 8.33 NA 6.25 17.39 NA NA NA 7.69 NA 10.00 NA NA 4.08 K cassette Hrb98DE,I_chr3R_24425722_24428493,I_chr3R_24426291_24426781,I_chr3R_24426737_24426805,RI_chr3R_24429041_24431183 chr3R + chr3R_24425722_24428493 chr3R_24425722_24426439;chr3R_24426918_24428493 chr3R_24426440_24426917 chr3R_24425622_24425721;chr3R_24428494_24428593 100.00 100.00 100.00 100.00 100.00 100.00 99.77 100.00 100.00 100.00 99.17 99.83 100.00 100.00 100.00 99.76 100.00 99.66 100.00 100.00 100.00 100.00 99.85 99.84 100.00 100.00 100.00 100.00 100.00 99.74 100.00 100.00 99.72 100.00 100.00 100.00 99.85 100.00 100.00 100.00 100.00 99.87 100.00 99.70 100.00 99.76 100.00 99.73 99.85 99.80 100.00 100.00 100.00 99.70 100.00 100.00 100.00 99.67 K alternative_acceptor CG12375 chr2L - chr2L_8126693_8126756 chr2L_8126699_8126756 chr2L_8126757_8126897;chr2L_8125668_8126692 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 88.89 NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA K intron_retention E(Pc) chr2R + chr2R_7339818_7340897 chr2R_7339817_7339818;chr2R_7340897_7340898 chr2R_7339812_7339817;chr2R_7340898_7340908 35.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 21.43 NA NA NA NA NA 38.46 NA NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA 31.82 NA NA NA NA NA NA NA NA NA NA K intron_retention CG1970,I_chr4_590803_590943,I_chr4_590970_591026,I_chr4_590970_591030 chr4 - chr4_590803_590943 chr4_590802_590803;chr4_590943_590944 chr4_590703_590802;chr4_590944_590969 97.14 100.00 97.44 93.33 100.00 93.75 100.00 100.00 97.01 94.12 96.43 93.22 96.55 100.00 97.30 94.44 95.83 97.14 96.77 94.12 100.00 100.00 97.50 97.67 95.45 100.00 97.50 100.00 100.00 96.43 100.00 100.00 91.30 97.30 100.00 94.74 97.50 96.67 93.48 100.00 94.12 96.61 100.00 100.00 96.15 96.30 96.43 100.00 96.15 95.00 97.50 100.00 95.24 95.65 97.14 95.65 100.00 96.77 K intron_retention CG6912 chr3R - chr3R_10962254_10962431 chr3R_10962253_10962254;chr3R_10962431_10962432 chr3R_10962205_10962253;chr3R_10962432_10962439 0.00 1.27 0.00 1.77 0.00 0.00 3.25 2.67 0.72 0.00 0.00 0.00 0.00 1.98 1.03 1.45 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 5.71 0.00 0.00 1.92 0.00 0.00 2.25 0.00 0.00 1.48 0.00 0.00 0.87 0.00 0.00 4.11 0.00 0.96 0.00 2.50 0.00 0.00 0.00 1.69 2.03 NA 0.00 2.94 0.00 0.00 0.00 1.52 1.79 0.85 K alternative_acceptor Dnz1,I_chr2L_10856029_10856162 chr2L - chr2L_10856029_10856162 chr2L_10856099_10856162 chr2L_10856163_10856262;chr2L_10855929_10856028 100.00 98.63 100.00 100.00 100.00 100.00 100.00 100.00 99.14 100.00 98.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.35 100.00 100.00 99.15 99.00 100.00 100.00 100.00 100.00 98.78 99.02 98.08 100.00 100.00 98.72 100.00 100.00 99.12 100.00 99.19 98.00 100.00 98.98 97.30 100.00 99.17 100.00 100.00 99.12 100.00 98.18 98.73 100.00 98.51 98.55 100.00 100.00 100.00 100.00 K alternative_acceptor CG2249,RI_chr2R_5937150_5937205 chr2R + chr2R_5937150_5937257 chr2R_5937150_5937205 chr2R_5937050_5937149;chr2R_5937258_5937305 0.61 0.00 0.76 1.09 0.61 0.55 0.93 0.87 0.72 1.42 1.01 0.60 0.81 0.35 0.77 0.18 0.00 1.10 0.00 0.35 0.00 0.00 1.26 0.72 0.00 0.58 1.06 0.00 0.47 1.88 1.86 0.89 0.00 0.65 0.90 0.48 1.26 0.57 1.00 0.41 1.14 0.47 0.84 0.29 0.54 0.56 0.72 0.56 0.46 1.17 0.83 0.96 0.00 0.24 0.51 0.96 0.97 0.51 N jcn_only_AD Syx4,I_chrX_2635555_2635621,I_chrX_2636831_2636971 chrX - chrX_2636025_2636593 chrX_2636025_2636091 chrX_2635931_2636024;chrX_2636594_2636830 0.00 6.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.16 0.00 0.00 6.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 K intron_retention Dscam,I_chr2R_3212243_3212342,F_chr2R_3219886_3228832,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3210838_3211323 chr2R_3210837_3210838;chr2R_3211323_3211324 chr2R_3210527_3210837;chr2R_3211324_3211473 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA TMS1 chr3L + chr3L_16407594_16407920;chr3L_16407594_16407905;chr3L_16407594_16407914;chr3L_16407594_16407893 chr3L_16407594_16407902 chr3L_16407384_16407593;chr3L_16407921_16408056 23.73 23.73 21.21 28.84 22.89 23.79 31.23 27.57 23.73 27.00 17.95 23.85 17.62 19.71 19.08 27.55 17.29 23.38 22.89 22.80 19.65 24.29 24.01 24.81 23.06 15.42 20.87 10.79 23.03 24.96 29.72 26.26 21.94 25.07 20.87 30.21 25.89 26.43 23.40 24.33 23.60 21.57 23.46 29.30 22.33 24.23 26.34 22.24 20.83 25.45 23.64 24.57 29.10 25.07 19.73 23.84 22.92 27.47 K jcn_only_AA CaMKII,I_chr4_1058049_1058127,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1058196_1058271 chr4_1058217_1058271 chr4_1058272_1058285;chr4_1058160_1058195 96.36 95.24 100.00 97.14 100.00 97.67 96.43 95.16 96.27 NA 96.55 96.67 100.00 100.00 97.73 96.00 96.49 97.56 95.45 98.39 91.89 86.21 97.14 96.36 100.00 95.65 93.33 NA 93.55 94.12 97.73 81.82 94.03 95.19 100.00 76.00 96.77 93.33 100.00 95.45 97.37 96.00 98.04 97.22 97.14 90.91 92.50 94.12 96.40 97.50 100.00 94.59 88.00 95.00 98.61 91.11 93.75 94.55 K intron_retention CG32016,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_973088_974138 chr4_973087_973088;chr4_974138_974139 chr4_972764_973087;chr4_974139_974432 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N cassette CG3635 chr2L + chr2L_22179567_22182737 chr2L_22179567_22179631;chr2L_22182055_22182737 chr2L_22179632_22182054 chr2L_22179487_22179566;chr2L_22182738_22183329 100.00 100.00 100.00 100.00 95.00 100.00 98.46 97.62 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 96.15 100.00 100.00 98.53 100.00 100.00 97.06 100.00 100.00 96.00 100.00 94.74 100.00 100.00 93.62 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 97.22 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention gammaCop,rod chr3R + chr3R_27400920_27400977 chr3R_27400919_27400920;chr3R_27400977_27400978 chr3R_27400767_27400919;chr3R_27400978_27401493 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.24 2.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor Moca-cyp chr3R + chr3R_24167182_24167249;chr3R_24167182_24167906;chr3R_24167182_24167243;chr3R_24167182_24167260 chr3R_24167182_24167348 chr3R_24167094_24167181;chr3R_24167907_24167936 53.49 57.14 50.00 53.85 43.48 43.24 61.54 59.02 56.94 50.00 41.18 56.45 53.57 51.72 52.63 47.37 48.28 50.00 50.00 51.58 50.00 31.37 60.56 57.69 58.06 60.00 63.79 59.38 58.70 42.59 76.92 29.17 16.53 49.21 51.06 55.32 63.08 53.49 62.90 60.23 54.90 61.11 40.00 64.52 50.00 53.45 47.83 25.49 55.07 53.66 63.49 60.00 51.52 57.58 48.72 57.45 50.00 28.38 K intron_retention RhoL,RI_chr3R_5323887_5323979,RI_chr3R_5323887_5328125,RI_chr3R_5323887_5328143,REI_chr3R_5324232_5328096,I_chr3R_5328034_5328096 chr3R - chr3R_5323887_5328096 chr3R_5323886_5323887;chr3R_5328096_5328097 chr3R_5323787_5323886;chr3R_5328097_5328196 0.90 0.00 1.40 0.72 0.67 0.00 0.90 0.65 1.22 0.00 0.85 1.67 0.00 1.24 0.92 1.04 3.50 0.62 1.52 1.29 1.53 0.71 3.55 0.00 0.96 1.62 1.45 0.00 2.44 0.00 1.43 1.35 0.00 1.55 0.00 0.00 1.34 0.00 0.00 1.13 1.30 1.01 1.34 1.65 0.00 0.72 1.16 0.00 0.85 0.56 0.99 0.00 0.00 0.78 1.03 1.19 0.80 0.34 K jcn_only_AA CG17508,RI_chr2R_1496995_1497120 chr2R + chr2R_1496995_1497568;chr2R_1496995_1497637 chr2R_1496995_1497120 chr2R_1496895_1496994;chr2R_1497638_1497761 1.56 3.45 0.00 1.01 1.69 1.85 1.92 2.13 1.90 0.00 1.72 2.75 2.13 1.28 1.22 1.52 2.33 0.00 0.00 0.68 1.56 5.63 0.00 2.78 2.56 0.00 2.94 0.00 2.94 1.59 0.00 0.00 5.80 0.00 4.17 0.00 4.08 2.63 1.96 0.95 2.63 0.73 1.43 1.61 3.64 1.25 4.94 1.85 1.27 0.00 0.00 0.00 0.00 5.77 1.06 4.48 1.06 0.79 N jcn_only_AD Ser,I_chr3R_23013597_23017227 chr3R - chr3R_23017847_23019665 chr3R_23017847_23018224 chr3R_23017228_23017846;chr3R_23019666_23019964 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention htt,I_chr3R_24527763_24528033,I_chr3R_24542203_24543363 chr3R + chr3R_24545600_24545688 chr3R_24545599_24545600;chr3R_24545688_24545689 chr3R_24545432_24545599;chr3R_24545689_24545978 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.88 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG2698,I_chr3R_3830586_3830981 chr3R + chr3R_3830586_3830975 chr3R_3830586_3830731;chr3R_3830741_3830975 chr3R_3830732_3830740 chr3R_3830486_3830585;chr3R_3830976_3831002 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 1.18 2.86 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 1.47 2.04 1.79 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG14741 chr3R - chr3R_7900593_7900895;chr3R_7900613_7900895 chr3R_7900616_7900895 chr3R_7900896_7901144;chr3R_7900525_7900592 48.91 51.02 62.96 51.09 NA 41.38 66.23 48.86 53.85 51.52 72.73 47.75 NA 39.13 46.30 51.97 50.82 46.00 43.40 36.11 44.44 49.37 48.67 49.23 67.27 59.76 52.63 NA 55.24 46.59 48.91 50.00 41.51 46.99 48.21 57.14 42.50 46.30 46.67 48.39 51.85 46.30 54.55 56.91 46.58 63.49 56.25 49.33 45.36 NA 56.72 52.63 44.44 45.83 54.55 43.59 38.46 38.17 K jcn_only_AA CG7834,I_chr3R_25628402_25628511,I_chr3R_25632049_25632125,RI_chr3R_25658089_25658914 chr3R - chr3R_25628382_25628511 chr3R_25628402_25628511 chr3R_25628512_25628565;chr3R_25628302_25628381 0.18 0.00 0.26 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.24 0.00 0.44 0.52 0.31 0.10 0.00 2.52 0.00 0.00 0.00 0.30 0.53 1.81 0.33 1.44 1.03 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.23 0.00 0.42 0.18 0.47 0.00 1.04 0.27 0.71 0.29 0.00 1.26 0.00 0.00 0.69 1.59 0.44 0.26 0.78 0.22 N alternative_acceptor CG42354,CG42353 chrX - chrX_15989427_15989490 chrX_15989430_15989490 chrX_15989491_15989723;chrX_15989002_15989426 8.51 0.00 5.00 11.88 14.81 7.94 10.78 6.19 11.51 10.53 13.24 7.77 10.00 6.56 7.41 10.75 0.00 8.86 6.33 9.77 9.38 11.63 8.57 0.00 0.00 7.02 9.88 10.61 15.25 6.67 11.69 10.81 7.83 9.24 8.47 8.06 0.00 8.77 9.64 8.60 8.00 11.43 13.64 8.06 8.51 7.55 9.76 8.45 7.63 0.00 13.24 6.82 0.00 0.00 11.84 10.00 6.90 7.46 K jcn_only_AD CG6294,CG6299,I_chrX_15358771_15359763,I_chrX_15359667_15359763 chrX + chrX_15358459_15359763 chrX_15359505_15359763 chrX_15359764_15359863;chrX_15357988_15358458 30.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 53.12 NA NA 23.81 35.00 NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA 48.15 NA NA NA 31.82 30.00 NA 22.58 NA NA NA 13.04 NA NA NA NA NA NA NA K alternative_acceptor CG1021,I_chr3R_2217711_2231099,I_chr3R_2217711_2231390,RI_chr3R_2217711_2231463,I_chr3R_2217742_2218601,I_chr3R_2217742_2219453,I_chr3R_2218465_2231390,RI_chr3R_2218465_2231463,I_chr3R_2218682_2231463,I_chr3R_2219634_2231390,I_chr3R_2231383_2231463 chr3R - chr3R_2218465_2218601;chr3R_2217711_2218601 chr3R_2217742_2218601 chr3R_2218602_2218681;chr3R_2217642_2217710 6.67 5.56 0.00 3.03 9.09 7.69 17.65 3.85 2.56 18.75 16.67 5.26 3.70 13.33 13.79 4.17 6.67 10.53 5.00 20.83 4.55 13.46 7.89 4.88 13.33 14.29 4.35 10.71 15.79 11.76 25.00 0.00 3.70 4.65 10.00 18.18 18.18 3.85 11.90 4.17 23.08 6.06 5.88 3.12 11.11 7.69 7.14 14.29 5.88 4.26 6.45 5.26 10.81 6.67 4.35 5.88 5.77 20.00 K intron_retention gish,I_chr3R_12125412_12126290 chr3R + chr3R_12124273_12126966 chr3R_12124272_12124273;chr3R_12126966_12126967 chr3R_12124192_12124272;chr3R_12126967_12127073 0.00 0.00 0.00 1.72 0.00 0.00 3.70 0.00 0.75 0.00 0.00 1.43 0.00 0.00 1.37 1.79 0.00 0.00 0.00 4.71 0.00 0.00 0.00 0.83 0.00 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 1.98 0.00 1.19 0.00 0.00 0.00 0.00 2.40 0.00 0.00 0.00 0.00 0.85 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31777,RI_chr2L_3706792_3706842,cutlet chr2L - chr2L_3706792_3706921 chr2L_3706791_3706792;chr2L_3706921_3706922 chr2L_3706692_3706791;chr2L_3706922_3706942 0.99 0.00 0.99 5.00 0.00 1.98 1.68 1.57 1.43 0.00 0.00 1.17 3.45 0.00 2.40 5.03 0.00 0.00 2.97 0.28 0.00 3.64 1.25 1.13 0.87 1.68 0.00 1.89 3.51 1.68 0.98 0.91 2.47 1.01 0.00 0.79 0.53 0.77 0.00 0.00 0.00 0.97 1.49 0.78 1.05 0.87 0.70 1.49 1.41 0.00 0.00 0.00 2.37 1.05 1.59 1.19 1.54 0.00 K alternative_donor Samuel,I_chr2L_11055477_11056411,RI_chr2L_11055477_11066544,RI_chr2L_11055480_11056411 chr2L - chr2L_11055480_11066544 chr2L_11055480_11056411 chr2L_11055380_11055479;chr2L_11066545_11066644 16.67 0.00 0.00 33.33 0.00 NA 20.00 25.00 28.57 0.00 0.00 20.00 50.00 25.00 25.00 50.00 25.00 0.00 25.00 25.00 0.00 10.00 20.00 25.00 NA 100.00 50.00 100.00 0.00 12.50 0.00 0.00 16.67 25.00 12.50 50.00 100.00 0.00 0.00 20.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 12.50 25.00 NA 20.00 33.33 0.00 NA 33.33 NA 0.00 16.67 K intron_retention RpL31,CG1827 chr2R + chr2R_5474789_5474951 chr2R_5474788_5474789;chr2R_5474951_5474952 chr2R_5474775_5474788;chr2R_5474952_5475211 46.15 NA NA 45.45 NA NA 40.00 38.10 40.91 NA NA 66.67 NA NA NA 66.67 NA NA NA 46.15 NA NA NA NA NA NA 50.00 50.00 70.00 NA 78.95 NA NA NA NA 41.67 NA NA NA NA NA 41.67 NA 20.00 NA 69.23 41.67 NA 53.33 NA NA NA 41.67 NA NA 46.15 47.62 60.00 K multi_cassette plexA,RI_chr4_1036247_1047588,RI_chr4_1040642_1047395,RF_chr4_1044307_1047399 chr4 - chr4_1036247_1042867 chr4_1036247_1037001;chr4_1039336_1039395;chr4_1040642_1042867 chr4_1037002_1039335;chr4_1039396_1040641 chr4_1036147_1036246;chr4_1042868_1044287 98.39 100.00 100.00 95.65 100.00 100.00 98.37 99.21 100.00 100.00 97.56 97.46 94.52 98.39 98.28 99.14 100.00 97.87 98.72 99.17 97.44 97.73 96.55 97.44 96.55 94.12 98.15 96.88 97.22 100.00 92.31 90.48 97.67 99.19 100.00 93.18 100.00 96.30 96.55 98.21 95.45 99.12 100.00 98.11 100.00 100.00 100.00 97.92 99.20 100.00 100.00 100.00 93.33 88.24 100.00 100.00 100.00 100.00 K jcn_only_AA ftz-f1,I_chr3L_18765465_18765553,I_chr3L_18765465_18765559,CEI_chr3L_18765465_18790636,I_chr3L_18790575_18790636 chr3L - chr3L_18748974_18790636;chr3L_18790575_18790636 chr3L_18756963_18790636 chr3L_18790637_18790736 97.14 100.00 100.00 97.30 100.00 92.00 95.24 96.43 100.00 100.00 91.30 100.00 NA 100.00 NA 91.30 100.00 100.00 100.00 98.39 95.45 94.12 95.65 96.00 97.96 95.65 100.00 96.97 97.22 94.87 95.83 NA 97.73 95.74 96.43 100.00 96.84 97.83 98.33 95.00 NA 98.33 95.45 85.19 100.00 100.00 90.91 97.30 97.96 84.00 94.59 85.71 NA NA 97.06 93.75 NA 100.00 K intron_retention CG30389,I_chr2R_17044803_17047935 chr2R - chr2R_17037707_17037769 chr2R_17037706_17037707;chr2R_17037769_17037770 chr2R_17037514_17037706;chr2R_17037770_17038428 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.46 1.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Vha100-1,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24962422_24962797 chr3R_24962421_24962422;chr3R_24962797_24962798 chr3R_24962326_24962421;chr3R_24962798_24962897 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.53 0.00 0.00 0.00 3.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.67 0.00 0.00 0.00 0.00 0.00 1.42 0.00 2.99 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention stai,I_chr2L_6110225_6121773 chr2L + chr2L_6122191_6122263 chr2L_6122190_6122191;chr2L_6122263_6122264 chr2L_6122005_6122190;chr2L_6122264_6122410 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7272 chr3L + chr3L_15494361_15495936 chr3L_15494360_15494361;chr3L_15495936_15495937 chr3L_15494055_15494360;chr3L_15495937_15496342 0.00 0.00 0.85 0.00 0.00 0.00 0.87 0.79 1.18 0.00 0.00 0.60 1.52 2.70 0.00 0.83 0.00 1.25 0.00 0.00 0.00 2.17 4.00 3.85 2.00 0.00 0.00 4.08 0.00 2.33 0.00 0.00 1.83 0.75 0.00 0.00 1.28 0.00 0.00 1.60 0.00 1.80 0.00 0.00 0.00 0.00 0.00 2.90 0.63 0.00 1.25 0.00 0.00 1.27 0.00 0.00 0.00 0.00 K intron_retention tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_562850_562902 chr3R_562849_562850;chr3R_562902_562903 chr3R_562745_562849;chr3R_562903_562974 0.00 0.00 2.14 2.07 0.00 0.00 0.00 0.33 2.39 0.00 0.00 0.00 1.61 0.00 0.00 1.41 1.28 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 1.45 1.54 2.56 1.67 0.00 1.79 0.00 0.00 1.12 0.00 1.80 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.68 1.61 0.00 1.42 0.00 0.00 1.59 0.00 0.00 0.00 1.23 K intron_retention CG7029,CG7023 chr3R + chr3R_18580991_18592332 chr3R_18580990_18580991;chr3R_18592332_18592333 chr3R_18580928_18580990;chr3R_18592333_18592448 0.00 NA 0.00 9.38 0.00 NA 4.88 0.00 1.92 NA 0.00 0.00 0.00 0.00 0.00 6.06 5.26 NA 2.94 0.00 NA 7.69 0.00 6.67 6.67 0.00 14.29 NA NA 0.00 0.00 NA NA 5.00 NA NA 0.00 NA NA 0.00 NA 2.70 0.00 0.00 NA NA NA NA 2.94 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention cryptocephal,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21312044_21312124 chr2L_21312043_21312044;chr2L_21312124_21312125 chr2L_21311984_21312043;chr2L_21312125_21312208 88.88 89.77 89.58 86.63 90.00 94.35 83.64 90.45 90.18 83.96 90.21 88.11 93.52 89.33 92.68 90.87 92.76 90.72 91.74 87.34 90.57 88.66 88.14 86.42 85.52 88.21 92.50 89.26 86.52 83.19 89.93 88.33 90.07 89.18 87.63 50.74 83.42 NA 84.10 86.27 88.50 89.10 91.95 89.86 86.52 84.96 88.29 90.00 89.81 84.76 88.19 86.00 86.84 88.31 89.53 87.18 89.40 90.62 K intron_retention CG9143 chr2R - chr2R_16164156_16164213 chr2R_16164155_16164156;chr2R_16164213_16164214 chr2R_16163972_16164155;chr2R_16164214_16164666 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.70 NA 0.00 4.35 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AA CG8128,I_chrX_15591697_15591816 chrX + chrX_15591697_15592065;chrX_15591697_15592355 chrX_15591697_15591816 chrX_15591597_15591696;chrX_15592356_15592720 0.00 2.78 4.00 4.35 NA NA 0.00 2.56 3.12 NA NA 6.06 NA 4.17 3.70 0.00 0.00 4.17 0.00 1.75 0.00 NA 0.00 2.27 NA 0.00 0.00 2.50 0.00 0.00 3.70 0.00 0.00 2.94 NA 3.57 0.00 0.00 2.08 0.00 4.76 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 2.44 K alternative_donor fws,CG6453 chr2L - chr2L_17480920_17480968;chr2L_17480920_17480972;chr2L_17480920_17481149 chr2L_17480920_17480983 chr2L_17480825_17480919;chr2L_17481150_17481199 9.09 33.33 0.00 12.50 33.33 0.00 8.33 22.22 14.29 NA 20.00 11.11 0.00 0.00 0.00 0.00 0.00 25.00 14.29 9.09 0.00 0.00 NA NA NA 0.00 NA NA NA NA 0.00 0.00 33.33 20.00 NA NA 0.00 NA NA 16.67 NA 18.18 NA NA 25.00 NA NA 20.00 20.00 0.00 NA NA NA NA 25.00 NA 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2389980 chrX_2387249_2388436;chrX_2388671_2389073;chrX_2389272_2389644;chrX_2389762_2389980 chrX_2388437_2388670;chrX_2389074_2389271;chrX_2389645_2389761 chrX_2387149_2387248;chrX_2389981_2390066 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA 66.67 NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG5554,gbb chr2R + chr2R_19733464_19733650 chr2R_19733464_19733629 chr2R_19733289_19733463;chr2R_19733651_19734547 1.09 1.12 1.12 2.27 0.93 0.44 1.59 0.69 0.79 2.13 0.00 1.07 0.75 0.57 0.71 1.99 0.00 0.44 2.38 0.54 1.58 0.69 1.57 1.10 3.62 3.15 0.43 0.61 0.53 1.29 0.67 0.91 2.42 1.97 1.01 4.46 0.68 0.96 3.15 1.82 3.04 0.60 3.38 0.96 4.50 1.09 0.91 2.13 2.15 1.54 1.40 0.52 1.66 0.76 0.39 1.43 0.61 1.46 K jcn_only_AA CG9855,RI_chr3R_222522_222581,RI_chr3R_222525_222604,I_chr3R_223384_223429 chr3R - chr3R_222522_222581;chr3R_222525_222581 chr3R_222528_222581 chr3R_222582_222650;chr3R_222457_222521 4.44 0.00 8.62 5.21 4.65 4.44 6.25 3.57 3.77 3.51 4.65 10.23 2.44 3.64 4.41 1.45 8.82 7.84 5.26 5.21 6.67 2.59 3.53 5.33 1.92 2.99 2.44 6.38 6.31 2.47 0.00 6.98 3.12 2.63 2.08 2.99 4.00 2.94 2.35 8.03 6.09 4.24 4.08 2.82 6.38 5.00 6.38 5.46 7.69 8.00 4.11 3.57 7.50 4.55 5.41 5.62 3.66 6.86 K intron_retention mus210,RI_chr2R_11200323_11202068,RI_chr2R_11200323_11202128,chr2R_11200326_11200570.0,chr2R_11200670_11201286.0 chr2R + chr2R_11200323_11202122 chr2R_11200322_11200323;chr2R_11202122_11202123 chr2R_11200223_11200322;chr2R_11202123_11202168 13.73 11.25 16.25 21.88 11.11 15.94 18.75 11.40 10.91 5.88 16.67 10.71 30.61 19.35 13.27 13.51 14.29 9.68 13.85 12.50 14.81 10.24 12.90 9.92 15.12 17.95 14.19 31.91 23.68 13.08 15.29 15.00 10.61 13.16 13.13 27.91 11.46 13.73 13.38 15.38 27.14 14.50 9.26 7.95 19.44 13.24 18.64 10.53 12.21 21.43 14.73 11.11 10.64 19.57 10.81 15.28 8.70 25.00 K jcn_only_AD drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9390195;chr2R_9389597_9390151;chr2R_9389597_9389907;chr2R_9389597_9390293;chr2R_9389597_9389751;chr2R_9389597_9390264;chr2R_9389597_9389753;chr2R_9389597_9389757 chr2R_9389597_9389940 chr2R_9389497_9389596;chr2R_9390294_9390295 0.00 1.61 1.16 0.00 0.00 0.00 0.00 1.80 1.25 2.44 1.52 1.75 1.39 0.00 2.41 2.61 1.75 0.00 2.13 0.44 0.00 0.00 0.00 1.37 0.00 1.37 0.00 0.00 0.00 0.00 1.18 0.00 2.33 0.00 3.33 0.00 0.00 0.00 1.67 1.92 4.00 0.00 0.00 0.00 0.00 3.28 2.35 0.00 2.24 0.00 1.39 1.54 0.00 0.00 1.19 0.00 0.00 0.00 K intron_retention Paip2,noncoding_16407,I_chr3R_8809774_8809832 chr3R + chr3R_8807110_8809456 chr3R_8807109_8807110;chr3R_8809456_8809457 chr3R_8807046_8807109;chr3R_8809457_8809605 0.00 0.00 0.00 0.00 0.00 0.00 1.14 1.23 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Vrp1,I_chr2R_17997529_17997692 chr2R - chr2R_17997866_17998050 chr2R_17997865_17997866;chr2R_17998050_17998051 chr2R_17997711_17997865;chr2R_17998051_17998443 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 2.60 1.54 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG18522,CG18519 chr3R - chr3R_11362279_11362757 chr3R_11362278_11362279;chr3R_11362757_11362758 chr3R_11361350_11362278;chr3R_11362758_11363069 3.08 7.69 0.00 10.00 0.00 0.00 2.38 1.35 2.60 5.13 9.09 2.11 2.27 0.00 3.08 0.00 0.00 0.00 0.00 2.53 0.00 14.47 6.52 8.24 5.63 0.00 4.76 6.40 7.23 6.90 0.00 5.00 3.30 6.78 0.00 4.92 5.10 2.00 2.41 7.35 0.00 1.37 3.23 4.23 0.00 4.35 0.00 8.47 7.46 3.77 7.78 11.76 0.00 3.57 0.00 3.45 0.00 0.00 K intron_retention mael chr3L + chr3L_22717513_22717583 chr3L_22717512_22717513;chr3L_22717583_22717584 chr3L_22717334_22717512;chr3L_22717584_22717785 95.83 95.00 96.77 95.56 95.65 96.00 100.00 98.00 94.34 94.44 100.00 98.18 90.48 100.00 91.43 97.62 94.44 100.00 93.33 100.00 94.74 94.44 92.31 95.65 100.00 100.00 100.00 95.65 95.83 94.44 96.88 96.43 96.97 96.43 91.67 95.24 100.00 95.24 95.83 90.91 95.83 96.08 91.30 100.00 95.65 97.30 100.00 98.04 92.45 100.00 87.50 94.12 95.24 100.00 96.55 92.86 94.74 100.00 K intron_retention CG3770,CG12851,F_chr2R_20839778_20839843 chr2R + chr2R_20833856_20833905 chr2R_20833855_20833856;chr2R_20833905_20833906 chr2R_20833742_20833855;chr2R_20833906_20834164 1.27 0.00 0.00 4.26 2.60 4.60 8.33 0.93 3.57 0.00 6.90 3.42 0.00 0.00 1.27 5.26 0.00 1.41 0.00 1.28 0.00 32.50 1.75 1.50 0.00 1.43 3.00 3.51 0.00 3.92 0.00 0.00 3.92 0.83 1.64 2.94 0.00 0.00 1.43 2.60 0.00 1.44 2.00 1.00 1.25 0.00 0.00 0.00 1.67 1.18 1.80 2.86 0.00 0.00 0.00 0.00 1.01 1.82 K jcn_only_AA CG8878 chr2R - chr2R_8037642_8038415 chr2R_8037645_8038415 chr2R_8038416_8038531;chr2R_8037556_8037641 47.91 28.57 38.46 55.93 42.86 60.00 40.82 48.19 55.41 40.00 NA 46.34 39.53 61.54 68.57 43.00 62.50 NA 51.92 44.12 53.85 48.00 45.10 NA 56.52 45.71 56.25 37.50 50.00 45.45 54.69 44.00 45.61 38.27 49.02 50.98 66.67 52.00 NA 48.53 47.62 43.94 44.83 59.18 48.39 39.13 56.00 38.14 50.00 NA 39.13 46.15 66.67 47.83 35.19 55.56 55.00 35.29 K intron_retention slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,I_chr2R_20289332_20290093 chr2R - chr2R_20280727_20281010 chr2R_20280726_20280727;chr2R_20281010_20281011 chr2R_20279743_20280726;chr2R_20281011_20281037 8.06 9.68 9.23 17.02 8.89 12.00 12.50 11.25 13.16 8.16 5.08 5.77 7.35 8.96 13.24 7.41 15.00 8.00 7.41 11.43 8.33 11.63 3.53 4.30 0.00 10.17 8.06 7.81 9.33 5.48 7.35 9.38 7.50 9.28 5.88 4.17 8.91 4.00 5.00 10.30 6.76 8.59 10.00 4.21 2.68 7.87 6.82 9.35 10.83 5.68 9.86 1.82 7.94 11.63 8.45 6.78 2.44 6.04 K intron_retention alpha-Adaptin,I_chr2L_412659_413240,I_chr2L_413655_413722 chr2L - chr2L_412659_413395 chr2L_412658_412659;chr2L_413395_413396 chr2L_412559_412658;chr2L_413396_413654 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.98 0.00 12.90 0.00 0.00 0.00 0.00 1.61 0.00 4.76 0.00 0.00 7.41 3.85 0.00 0.00 0.00 0.00 0.00 0.00 6.45 0.00 0.00 0.00 5.21 0.00 0.00 2.94 0.00 0.00 2.63 0.00 6.67 0.00 2.27 0.00 8.70 4.35 0.00 4.62 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 K cassette inaE chrX + chrX_13695807_13696099 chrX_13695807_13695934;chrX_13696042_13696099 chrX_13695935_13696041 chrX_13695777_13695806;chrX_13696100_13696204 100.00 100.00 100.00 94.74 100.00 92.31 94.29 98.00 98.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 97.37 100.00 94.44 100.00 100.00 93.75 60.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 96.88 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 K intron_retention fog,I_chrX_22231114_22238023,RE_chrX_22256169_22256990 chrX - chrX_22229125_22229182 chrX_22229124_22229125;chrX_22229182_22229183 chrX_22228003_22229124;chrX_22229183_22231113 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 98.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 97.78 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N jcn_only_AA Smr,I_chrX_12625852_12636351,REI_chrX_12635675_12636351 chrX - chrX_12625938_12636351;chrX_12635675_12636351;chrX_12625852_12636351 chrX_12635693_12636351 chrX_12636352_12636441 0.00 0.00 0.00 7.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 N alternative_donor Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824086_11824186;chr2R_11824086_11825790 chr2R_11824086_11824525 chr2R_11823989_11824085 62.32 63.89 65.12 60.00 42.42 74.00 65.12 70.00 68.71 61.29 75.00 36.99 63.41 60.00 59.32 42.05 63.83 72.22 41.67 67.63 72.50 21.43 69.39 63.10 50.00 50.00 60.27 42.25 38.60 49.12 59.62 57.89 39.76 56.16 62.75 54.43 68.97 70.27 68.81 57.41 34.88 62.50 55.26 50.00 37.63 51.95 62.32 44.44 72.12 69.74 65.75 66.67 70.97 69.23 64.41 67.14 70.93 56.41 K intron_retention CG17018 chr2L + chr2L_22365325_22365376 chr2L_22365324_22365325;chr2L_22365376_22365377 chr2L_22365205_22365324;chr2L_22365377_22365474 0.00 0.00 1.47 2.10 0.00 0.00 1.42 1.45 1.89 0.00 0.00 0.00 0.79 0.71 2.05 1.77 1.02 0.00 0.00 0.86 0.00 2.00 2.53 0.81 0.00 2.21 2.99 4.76 0.00 0.00 0.62 0.00 1.54 1.23 0.00 3.92 2.70 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 1.31 0.00 1.60 4.17 0.00 0.00 0.00 0.00 K intron_retention CG40263,F_chr2RHet_1265687_1293040,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1292187_1293055 chr2RHet_1292186_1292187;chr2RHet_1293055_1293056 chr2RHet_1292104_1292186;chr2RHet_1293056_1293121 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 98.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 98.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA how chr3R + chr3R_17900667_17903085 chr3R_17900667_17903005 chr3R_17900174_17900666;chr3R_17903086_17903573 97.44 100.00 97.78 98.48 100.00 93.62 94.87 98.57 98.94 88.89 100.00 97.44 100.00 94.87 100.00 96.08 100.00 97.14 95.45 94.95 89.29 98.65 100.00 98.33 95.83 88.57 97.87 97.87 100.00 97.01 100.00 100.00 96.67 95.59 91.18 93.22 100.00 100.00 91.84 98.10 100.00 95.88 100.00 100.00 91.89 95.95 96.08 98.81 98.80 87.04 93.75 100.00 92.68 97.06 95.74 97.06 97.56 95.89 K intron_retention CG11266,RI_chr2L_7033019_7034764,I_chr2L_7034274_7035406,I_chr2L_7051093_7051366 chr2L + chr2L_7032836_7032903 chr2L_7032835_7032836;chr2L_7032903_7032904 chr2L_7032797_7032835;chr2L_7032904_7033018 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 95.83 95.45 96.88 97.22 100.00 100.00 96.55 100.00 94.12 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 96.97 100.00 NA 100.00 93.33 100.00 100.00 100.00 97.37 95.00 94.44 100.00 92.86 93.33 93.33 100.00 100.00 100.00 93.33 92.31 88.89 97.06 100.00 100.00 100.00 K intron_retention Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CE_chr2R_11826384_11826741,I_chr2R_11826763_11826990,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824089_11825183 chr2R_11824088_11824089;chr2R_11825183_11825184 chr2R_11823989_11824088;chr2R_11825184_11825384 36.84 37.50 30.43 57.14 15.79 7.14 36.84 39.39 38.81 26.67 21.74 37.29 56.25 57.89 35.48 66.67 52.94 47.06 36.84 36.00 40.00 32.20 38.00 28.00 36.00 13.33 38.71 65.22 51.72 31.25 36.36 53.33 50.00 32.43 28.57 50.00 33.33 40.00 42.59 42.59 61.11 29.51 26.32 43.59 39.29 39.02 30.77 42.86 42.86 24.32 32.50 36.36 20.93 31.43 39.29 33.33 28.95 34.48 K intron_retention CG12768,I_chr3L_22903673_22904689,RI_chr3L_22907400_22913294,I_chr3L_22913779_22916461 chr3L + chr3L_22907400_22916461 chr3L_22907399_22907400;chr3L_22916461_22916462 chr3L_22907300_22907399;chr3L_22916462_22916561 23.08 NA NA 3.03 NA NA NA 20.00 29.41 NA NA 33.33 NA NA NA 22.22 NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA 26.67 NA NA NA NA NA 17.65 26.67 29.41 NA NA NA 11.11 NA NA 29.41 30.00 23.08 NA NA NA NA 14.29 7.69 29.41 K jcn_only_AD CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21263124_21263647 chr2L_21263180_21263647 chr2L_21263648_21263786;chr2L_21262988_21263123 17.05 18.42 15.38 14.41 46.15 15.00 19.05 8.87 21.98 NA 12.50 17.05 19.15 14.49 16.18 15.32 31.58 10.64 12.33 18.18 23.08 17.86 4.26 22.58 23.53 26.56 17.31 20.00 30.56 11.76 8.86 19.23 19.35 15.93 14.29 13.95 20.00 NA 9.68 8.11 NA 11.54 17.54 23.40 23.81 9.09 NA 24.14 21.05 22.58 11.11 12.90 NA NA 12.36 10.00 12.50 33.33 K intron_retention CG14438 chrX + chrX_6653928_6654020 chrX_6653927_6653928;chrX_6654020_6654021 chrX_6653906_6653927;chrX_6654021_6654243 21.88 NA NA 46.15 NA NA 35.71 20.00 21.88 NA NA 16.67 NA 7.69 25.00 35.29 NA 25.00 25.00 17.86 NA NA 42.86 NA NA NA 23.53 NA NA 10.53 28.57 NA NA 19.23 11.11 29.41 26.67 NA NA 18.75 NA 21.74 7.14 NA NA NA NA 11.11 21.43 NA NA NA NA NA 28.57 NA NA NA K alternative_last_exon chn chr2R + chr2R_11027601_11029341 chr2R_11027601_11027975 chr2R_11029342_11032291 chr2R_11027976_11028245 chr2R_11026584_11027600 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 K intron_retention RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817 chr2R + chr2R_15329995_15330086 chr2R_15329994_15329995;chr2R_15330086_15330087 chr2R_15329948_15329994;chr2R_15330087_15330245 81.82 NA NA NA NA NA 59.09 NA 77.78 NA NA 72.73 NA NA NA NA NA NA NA 76.92 NA 85.19 90.00 100.00 64.29 NA 100.00 NA 85.71 NA 81.82 70.00 NA NA NA 45.00 NA 70.00 87.50 66.67 90.91 63.64 NA NA NA 91.67 66.67 NA 66.67 81.82 92.31 87.50 81.82 75.00 NA 70.59 90.91 88.89 K alternative_acceptor CG14619,RI_chrX_21860097_21868647,I_chrX_21865109_21865522,I_chrX_21869837_21869915 chrX + chrX_21867359_21868000 chrX_21867359_21867984 chrX_21867326_21867358;chrX_21868001_21868211 5.56 4.76 9.68 12.20 3.85 5.00 4.76 5.00 6.32 2.13 5.71 6.19 NA 4.76 0.00 14.71 NA 8.57 3.85 7.77 2.63 11.11 3.49 2.90 4.41 0.00 5.17 12.00 3.45 5.26 7.14 9.09 8.60 5.88 5.66 6.15 3.87 0.00 4.35 10.53 16.67 4.60 9.52 9.30 7.14 7.32 5.88 6.25 6.74 5.56 10.00 3.03 4.35 0.00 2.44 4.76 1.61 6.12 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389272_2395659 chrX_2389272_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2393243;chrX_2393712_2395659 chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664;chrX_2393244_2393711 chrX_2389172_2389271;chrX_2395660_2395759 20.00 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_donor CG1115,F_chr3R_1052705_1053045 chr3R + chr3R_1052705_1053045;chr3R_1052718_1053045 chr3R_1052701_1053045 chr3R_1053046_1053145;chr3R_1052605_1052700 70.37 79.07 60.00 62.50 73.91 42.11 77.08 78.05 67.21 65.00 59.09 69.57 66.67 60.00 62.96 61.90 50.00 80.77 67.74 63.83 73.68 81.48 67.35 75.00 76.19 70.00 66.00 65.71 60.87 78.12 70.59 80.00 76.19 63.83 61.54 72.73 77.55 67.57 67.39 76.60 75.00 72.55 90.91 78.26 71.88 77.55 68.00 64.29 66.67 74.51 67.92 69.23 71.43 70.37 74.07 75.00 71.25 73.33 K alternative_donor CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042885_5043077 chr2L_5042885_5042960 chr2L_5042835_5042884;chr2L_5043078_5043083 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 95.00 100.00 90.00 100.00 100.00 100.00 96.15 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention rost chr2L - chr2L_8986531_8986599 chr2L_8986530_8986531;chr2L_8986599_8986600 chr2L_8985936_8986530;chr2L_8986600_8986783 0.00 0.00 2.27 0.58 0.66 0.00 1.12 1.02 0.90 0.00 0.00 1.12 0.00 0.00 1.88 0.77 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.75 0.00 2.53 3.95 0.00 0.00 0.89 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.32 1.38 0.50 1.31 0.37 1.18 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 1.26 0.00 0.58 0.00 K jcn_only_AA CG13585,RI_chr2R_20420065_20420105,E_chr2R_20420167_20420418 chr2R + chr2R_20420065_20420120 chr2R_20420065_20420105 chr2R_20419965_20420064;chr2R_20420121_20420166 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 NA 2.50 1.89 0.00 0.00 0.00 0.00 0.88 0.00 6.25 0.00 0.00 2.63 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 1.89 0.00 0.00 0.00 2.04 3.03 0.00 NA 1.52 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 2.20 0.00 N jcn_only_AD ATPsyn-Cf6,I_chr3R_19181508_19181563,I_chr3R_19181524_19181702 chr3R - chr3R_19181508_19183230;chr3R_19181508_19181702 chr3R_19181508_19181584 chr3R_19181424_19181507;chr3R_19183231_19184049 2.17 1.06 1.27 2.85 1.19 1.42 2.69 1.45 1.66 3.05 1.72 1.49 2.78 1.18 1.24 0.90 0.93 2.77 2.23 1.06 1.87 2.44 3.30 2.35 6.40 3.87 5.39 1.39 6.03 3.33 2.37 0.87 1.67 1.28 3.14 2.99 2.52 2.69 2.17 3.37 0.53 0.70 1.87 3.70 1.29 2.93 1.57 1.99 1.16 4.15 4.32 4.02 2.41 2.70 1.32 1.83 3.20 1.28 K intron_retention CG6937 chr3R + chr3R_18410681_18410747 chr3R_18410680_18410681;chr3R_18410747_18410748 chr3R_18410482_18410680;chr3R_18410748_18411092 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive CG8929 chr2R + chr2R_16214899_16215371,chr2R_16215640_16215831 chr2R_16214899_16214948,chr2R_16215075_16215831 chr2R_16215372_16215639 chr2R_16214949_16215074 chr2R_16214792_16214898;chr2R_16215832_16216526 8.33 9.38 7.69 8.11 15.00 10.71 15.62 9.09 7.27 9.09 13.04 8.89 14.29 17.65 10.71 9.38 13.04 10.53 3.70 9.38 8.33 2.78 7.55 5.13 4.35 20.00 5.56 8.33 15.79 5.26 7.41 9.09 10.00 8.57 5.26 3.12 4.26 6.45 7.41 9.52 0.00 9.62 8.00 6.45 4.76 4.76 10.00 10.00 9.09 6.45 4.76 13.04 9.09 3.57 7.69 6.45 4.35 15.79 K cassette vari,I_chr2L_20789508_20789585,I_chr2L_20792267_20794059 chr2L - chr2L_20789424_20789720 chr2L_20789424_20789585;chr2L_20789661_20789720 chr2L_20789586_20789660 chr2L_20789408_20789423;chr2L_20789721_20790052 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27805342_27811232;chr3R_27805342_27810955 chr3R_27805342_27811214 chr3R_27805247_27805341;chr3R_27811233_27811433 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.76 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 K intron_retention Acox57D-p,Acox57D-d chr2R + chr2R_17273963_17274237 chr2R_17273962_17273963;chr2R_17274237_17274238 chr2R_17273945_17273962;chr2R_17274238_17274328 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 94.44 95.65 NA 100.00 100.00 100.00 100.00 100.00 92.86 90.00 100.00 91.67 100.00 NA 93.75 100.00 100.00 94.44 90.91 91.67 91.67 96.15 100.00 95.45 100.00 100.00 100.00 100.00 93.75 100.00 96.67 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 K intron_retention shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9791078_9791208 chr2R - chr2R_9809679_9812814 chr2R_9809678_9809679;chr2R_9812814_9812815 chr2R_9809052_9809678;chr2R_9812815_9812985 0.00 0.00 2.56 4.85 0.00 2.50 1.90 1.98 0.63 0.00 0.00 2.44 3.92 1.47 2.33 4.49 0.00 0.00 5.56 0.00 0.00 6.45 2.00 0.00 0.00 4.88 5.71 0.00 0.00 0.00 0.00 NA 0.00 1.98 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.30 1.72 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA NA K jcn_only_AD sax chr2R + chr2R_3694104_3694576 chr2R_3694518_3694576 chr2R_3694577_3694706;chr2R_3694102_3694103 4.69 0.00 2.44 1.39 2.78 2.78 8.33 0.00 3.60 8.57 0.00 4.40 3.57 0.00 0.00 1.52 6.12 13.51 4.44 5.41 5.56 28.57 3.64 1.79 9.80 5.56 5.41 12.50 15.00 8.82 10.20 13.33 21.43 1.18 0.00 11.90 3.39 7.14 6.25 12.05 19.51 2.63 2.17 7.14 21.88 0.00 0.00 21.95 3.64 2.13 4.48 2.04 6.12 7.41 4.69 0.00 6.82 16.67 K jcn_only_AA CG8478,CREF_chr3R_5589662_5589762 chr3R + chr3R_5589658_5589762;chr3R_5589658_5589747 chr3R_5589658_5589759 chr3R_5589562_5589657;chr3R_5589763_5589862 7.69 5.13 7.69 6.02 8.57 8.33 6.12 12.00 12.20 7.14 13.64 10.00 14.71 3.33 4.17 1.47 9.52 8.11 5.41 5.13 10.42 4.88 14.29 9.52 7.14 13.21 3.85 4.35 8.33 5.19 6.52 7.69 13.98 10.39 11.43 4.65 14.89 3.85 6.67 7.45 4.88 6.82 2.33 6.38 11.11 16.00 7.69 4.40 9.09 7.14 14.04 12.12 12.12 3.33 6.98 7.84 NA 15.91 K intron_retention RpL6 chr3R - chr3R_27421186_27421242 chr3R_27421185_27421186;chr3R_27421242_27421243 chr3R_27420360_27421185;chr3R_27421243_27421323 100.00 100.00 100.00 99.97 100.00 99.96 100.00 100.00 99.99 99.97 100.00 100.00 100.00 100.00 99.97 100.00 100.00 100.00 100.00 100.00 99.96 100.00 100.00 99.98 100.00 100.00 100.00 100.00 99.96 99.97 100.00 100.00 99.91 99.98 99.97 99.97 100.00 99.96 100.00 100.00 99.98 100.00 100.00 100.00 99.95 99.99 100.00 99.98 100.00 100.00 99.98 100.00 100.00 100.00 100.00 100.00 99.98 99.97 K cassette MRP,I_chr2L_12727117_12729243,F_chr2L_12727117_12736035 chr2L + chr2L_12727117_12737958;chr2L_12727117_12729930 chr2L_12727117_12728020;chr2L_12728242_12737958,chr2L_12728242_12729930 chr2L_12728021_12728241 chr2L_12727017_12727116;chr2L_12737959_12738176 56.15 58.08 60.25 57.55 46.55 48.57 67.21 56.15 57.66 57.55 41.89 69.82 60.36 62.60 58.43 72.20 57.58 65.03 72.29 80.00 44.55 32.94 52.86 52.35 57.14 55.24 46.45 24.48 42.50 44.28 51.24 57.50 45.54 60.55 51.65 55.68 51.18 46.72 46.58 61.05 64.00 58.33 58.33 50.65 51.80 60.34 55.24 50.62 65.20 33.65 46.81 53.33 65.12 55.15 58.25 46.35 68.34 71.28 K intron_retention CG18605 chr2R + chr2R_14865147_14865248 chr2R_14865146_14865147;chr2R_14865248_14865249 chr2R_14865024_14865146;chr2R_14865249_14865445 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention aop,I_chr2L_2160583_2160921,I_chr2L_2160583_2161009,I_chr2L_2160583_2161012,RI_chr2L_2160583_2171141,I_chr2L_2171199_2177846 chr2L - chr2L_2160583_2161232 chr2L_2160582_2160583;chr2L_2161232_2161233 chr2L_2160483_2160582;chr2L_2161233_2161841 22.73 22.22 25.00 22.22 14.29 20.00 31.58 16.00 10.81 NA 38.46 19.35 26.67 19.05 16.67 16.67 NA 20.00 14.29 39.29 25.00 41.94 21.43 35.71 26.09 NA 23.08 33.33 70.00 22.73 13.33 41.67 35.48 12.50 23.81 38.89 17.39 21.43 15.79 35.48 41.67 15.79 14.29 25.00 43.75 37.50 36.36 43.75 11.76 30.77 19.05 16.67 NA NA 12.50 NA 30.77 16.67 K intron_retention brm,I_chr3L_15968197_15968325 chr3L - chr3L_15975669_15975902 chr3L_15975668_15975669;chr3L_15975902_15975903 chr3L_15975368_15975668;chr3L_15975903_15975928 0.00 0.00 0.00 4.17 0.00 0.00 2.56 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 4.76 6.90 3.45 20.00 7.41 25.00 0.00 0.00 NA 0.00 3.45 0.00 20.00 0.00 2.50 0.00 2.50 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 2.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AD Akt1 chr3R + chr3R_11924988_11926621;chr3R_11925318_11926621;chr3R_11925014_11926621;chr3R_11925383_11926621 chr3R_11926502_11926621 chr3R_11926622_11926719;chr3R_11924974_11924987 9.09 NA NA 0.00 NA NA 0.00 2.63 10.71 NA NA 14.81 NA NA NA 5.00 NA NA NA 15.38 NA 42.50 3.45 13.04 NA NA 9.09 NA 33.33 NA NA NA 23.53 4.17 NA NA 3.85 NA NA 9.52 NA 6.25 NA NA NA NA NA NA 5.71 NA 12.90 NA NA NA NA NA NA NA K mutually_exclusive ens,I_chr3L_4130719_4131120 chr3L - chr3L_4127163_4128307,chr3L_4128974_4131120;chr3L_4127163_4130388,chr3L_4130644_4131120 chr3L_4127163_4129650,chr3L_4129789_4131120 chr3L_4128308_4128973;chr3L_4130389_4130643 chr3L_4129651_4129788 chr3L_4126989_4127162;chr3L_4131121_4131220 96.43 96.77 95.83 97.40 97.87 97.96 96.49 97.14 98.21 95.35 96.36 97.67 97.50 95.45 96.15 93.55 95.92 97.30 97.67 97.83 95.56 98.17 96.97 95.83 96.72 97.92 95.89 94.55 95.00 96.92 96.83 91.67 96.34 96.20 94.74 94.59 98.26 96.34 96.51 98.21 87.80 97.30 92.86 96.43 94.83 94.44 95.35 96.55 97.65 97.06 97.73 96.67 95.35 96.67 96.30 96.30 96.43 93.48 K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27761114_27762991,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27707594_27801169 chr3R_27707594_27771343;chr3R_27771381_27784756;chr3R_27784850_27795477;chr3R_27795508_27798223;chr3R_27798276_27801169 chr3R_27771344_27771380;chr3R_27784757_27784849;chr3R_27795478_27795507;chr3R_27798224_27798275 chr3R_27707494_27707593;chr3R_27801170_27801219 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 80.00 100.00 100.00 100.00 NA 100.00 100.00 85.71 100.00 80.00 100.00 100.00 NA 75.00 100.00 NA NA 100.00 100.00 NA 75.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 85.71 100.00 83.33 NA 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 100.00 80.00 NA 100.00 80.00 K jcn_only_AA mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818597_7818970;chr3R_7818575_7818970 chr3R_7818607_7818970 chr3R_7818971_7818995;chr3R_7818507_7818574 3.73 5.93 5.76 3.42 3.85 2.60 16.25 3.39 2.76 5.17 2.20 6.77 4.03 5.88 5.34 3.59 3.25 3.23 5.52 1.08 6.98 2.19 3.45 6.56 0.00 3.45 1.47 6.45 2.44 6.45 3.60 0.00 1.83 2.65 2.86 3.70 6.25 4.41 6.67 4.81 0.00 2.92 6.09 4.49 4.11 2.30 0.00 5.63 4.90 6.49 4.08 5.33 0.00 0.00 3.73 4.76 5.05 1.55 K jcn_only_AA CG31731,I_chr2L_13786850_13786922 chr2L + chr2L_13785976_13786279 chr2L_13785976_13786209 chr2L_13785797_13785975;chr2L_13786280_13786401 7.55 2.04 4.08 15.15 5.13 4.26 21.84 3.85 5.59 12.12 14.04 10.68 21.28 5.26 9.68 13.98 8.33 7.59 7.55 15.79 6.12 10.34 17.19 8.96 3.12 12.50 10.42 10.00 2.56 11.90 12.33 0.00 6.90 11.01 NA 8.00 0.00 5.13 5.88 4.35 NA 7.56 16.67 1.49 7.69 8.11 0.00 11.32 5.56 6.25 5.77 6.00 NA NA 5.13 NA 4.35 2.27 K intron_retention CG6401 chr2R - chr2R_13626277_13626332 chr2R_13626276_13626277;chr2R_13626332_13626333 chr2R_13625127_13626276;chr2R_13626333_13626570 0.00 NA 0.00 4.17 0.00 NA 4.76 0.00 3.23 0.00 0.00 4.76 NA NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 5.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 7.69 NA 0.00 NA NA 0.00 NA NA NA 4.76 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA K intron_retention RhoGAP71E,I_chr3L_15583097_15589765 chr3L + chr3L_15582377_15582458 chr3L_15582376_15582377;chr3L_15582458_15582459 chr3L_15581999_15582376;chr3L_15582459_15583096 79.07 75.86 83.33 87.72 77.27 100.00 77.33 84.48 89.13 61.11 62.96 84.62 89.29 83.33 82.50 89.19 85.29 82.14 80.43 87.04 76.67 60.78 79.07 77.78 94.12 95.65 75.86 61.54 74.07 63.16 87.50 57.14 60.42 79.41 74.29 74.19 85.00 76.19 84.62 69.64 53.33 85.00 77.50 77.50 68.42 62.16 85.00 57.58 84.85 68.00 75.00 62.50 90.00 93.33 80.49 83.33 84.62 65.71 K alternative_donor ari-1,I_chrX_18026911_18026975 chrX - chrX_18031084_18031650 chrX_18031084_18031608 chrX_18030475_18031083;chrX_18031651_18031714 100.00 NA 100.00 100.00 NA NA 90.91 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA 100.00 N mutually_exclusive kis,I_chr2L_228282_230537,I_chr2L_229978_230537,RI_chr2L_231035_231947,RI_chr2L_242745_242800,I_chr2L_242926_250756 chr2L - chr2L_227548_229172,chr2L_229383_230537 chr2L_227548_228132,chr2L_228282_230537 chr2L_229173_229382 chr2L_228133_228281 chr2L_227372_227547;chr2L_230538_230627 100.00 100.00 100.00 81.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 K intron_retention CG18445,I_chr2R_5927355_5927472 chr2R - chr2R_5926849_5926908 chr2R_5926848_5926849;chr2R_5926908_5926909 chr2R_5926678_5926848;chr2R_5926909_5927077 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.48 0.00 0.00 0.00 0.00 1.60 2.56 0.00 0.77 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor E(bx),I_chr3L_246324_246699 chr3L - chr3L_246324_246885;chr3L_246324_246438;chr3L_246324_246408;chr3L_246324_246794;chr3L_246324_246382;chr3L_246324_246388 chr3L_246324_246427 chr3L_246224_246323;chr3L_246886_246901 25.00 23.81 24.00 15.38 21.05 29.17 45.45 29.17 24.62 23.08 23.81 28.85 29.41 34.62 18.52 26.42 32.00 27.27 25.81 13.73 28.57 31.58 20.00 37.50 31.25 25.00 20.00 26.67 12.50 27.78 15.62 0.00 18.75 30.19 33.33 33.33 20.00 30.77 25.00 14.81 0.00 26.53 35.71 6.25 NA 25.00 50.00 27.27 22.03 25.00 24.14 35.71 25.00 0.00 36.67 20.00 0.00 50.00 N jcn_only_AA CG13900,I_chr3L_830745_830907 chr3L - chr3L_830715_830907;chr3L_830814_830907;chr3L_830729_830907 chr3L_830745_830907 chr3L_830908_831007;chr3L_830702_830714 1.15 1.32 2.92 3.03 1.14 0.00 1.05 0.47 0.79 0.00 2.91 1.95 1.03 0.97 0.71 1.15 3.70 1.94 0.71 1.19 1.90 1.92 0.79 1.82 2.44 4.08 0.00 7.35 0.00 0.00 1.60 1.23 0.00 1.38 0.00 0.00 1.13 0.91 0.57 0.74 0.00 1.30 0.00 1.33 2.33 4.84 0.00 1.15 0.56 2.06 0.69 1.56 0.00 5.26 1.34 2.20 1.19 1.11 K jcn_only_AD CDase chr3R + chr3R_26286617_26288536;chr3R_26286611_26288536;chr3R_26286613_26288536;chr3R_26286631_26288536 chr3R_26286512_26288536 chr3R_26288537_26288691;chr3R_26286221_26286511 79.17 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 63.89 NA NA 79.17 97.06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Lerp chr3R - chr3R_22669298_22669469 chr3R_22669298_22669376 chr3R_22669167_22669297;chr3R_22669470_22669638 25.93 25.81 9.68 20.00 NA 18.52 33.33 25.93 17.39 41.67 30.00 19.44 NA NA 19.23 NA NA NA NA 33.33 NA 44.83 32.35 29.41 30.00 38.10 25.00 NA 33.33 21.43 NA NA 40.00 25.81 20.59 22.22 23.64 30.23 26.32 30.77 NA 20.00 NA 44.00 23.08 23.33 31.25 14.29 29.17 36.36 15.91 NA 38.46 20.69 20.00 30.95 32.35 19.05 K alternative_donor SD23414,CG9132,I_chrX_16693612_16694097,I_chrX_16693612_16694529,I_chrX_16696492_16696589 chrX - chrX_16693612_16696171;chrX_16693612_16694558 chrX_16693612_16694097 chrX_16693512_16693611;chrX_16696172_16696233 1.41 1.22 1.41 2.53 1.85 1.59 1.41 1.12 0.74 1.79 2.13 0.84 2.04 2.04 1.35 1.56 2.13 1.52 0.00 0.67 1.72 1.49 0.94 0.96 0.00 0.00 2.67 1.96 1.43 1.32 1.47 3.49 1.74 1.15 1.56 1.41 0.76 1.08 0.74 0.86 2.86 0.75 2.27 1.41 1.65 1.52 1.05 2.02 0.87 1.10 1.19 1.79 1.11 0.97 1.35 0.90 0.78 2.22 K intron_retention CG14741 chr3R - chr3R_7902038_7902095 chr3R_7902037_7902038;chr3R_7902095_7902096 chr3R_7901501_7902037;chr3R_7902096_7902308 1.80 0.00 3.05 3.40 3.73 1.54 2.48 1.59 2.11 0.00 0.00 1.89 1.80 1.27 2.17 2.25 3.55 2.89 3.82 2.34 3.82 0.00 1.74 0.00 1.75 3.09 3.20 0.00 0.79 1.99 0.96 0.00 1.58 2.65 1.75 2.08 2.11 2.37 2.84 1.48 4.26 1.82 4.58 2.29 0.00 0.00 1.09 1.91 2.09 0.00 0.83 2.14 0.00 0.00 1.42 0.00 0.00 0.00 K alternative_last_exon RhoGAP102A chr4 + chr4_282689_283831 chr4_282689_283008 chr4_283832_283966 chr4_283009_283294 chr4_282650_282688 66.67 NA NA 80.00 NA NA NA 57.14 66.67 NA NA NA NA NA NA 50.00 NA NA NA 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA K intron_retention RpL36A,I_chr2L_8042126_8042468,snoRNA:Psi28S-2648 chr2L - chr2L_8042126_8042439 chr2L_8042125_8042126;chr2L_8042439_8042440 chr2L_8042026_8042125;chr2L_8042440_8042613 0.03 0.04 0.03 0.01 0.02 0.02 0.02 0.01 0.05 0.04 0.00 0.04 0.03 0.05 0.01 0.07 0.00 0.04 0.01 0.03 0.03 0.04 0.05 0.05 0.00 0.00 0.07 0.12 0.07 0.00 0.01 0.01 0.02 0.03 0.02 0.04 0.03 0.03 0.03 0.03 0.02 0.04 0.04 0.00 0.03 0.02 0.02 0.03 0.08 0.03 0.07 0.05 0.03 0.02 0.00 0.02 0.00 0.02 K alternative_acceptor CG8632,CG8646 chr2R + chr2R_8541564_8541630 chr2R_8541564_8541615 chr2R_8541495_8541563;chr2R_8541631_8541699 15.19 10.53 10.53 10.81 25.00 17.65 6.90 18.52 10.53 23.33 NA 20.69 29.41 NA 12.50 16.67 17.65 10.00 15.00 19.32 NA 14.29 7.50 7.89 19.05 26.32 9.38 5.00 15.66 19.61 9.68 16.98 19.54 18.52 12.12 25.71 16.67 11.11 11.11 14.77 15.79 6.38 NA 13.56 8.70 20.00 15.15 15.22 14.00 NA 17.86 16.67 10.71 17.39 12.50 10.00 21.74 18.84 K alternative_acceptor CG7091,RI_chr3R_8805541_8805680,I_chr3R_8809774_8809832 chr3R + chr3R_8804833_8804890 chr3R_8804833_8804873 chr3R_8804612_8804832;chr3R_8804891_8805199 2.63 2.70 0.00 1.75 0.00 4.00 4.35 4.26 0.00 NA 2.56 4.69 0.00 0.00 0.00 0.00 0.00 0.00 2.78 2.97 2.94 3.23 3.45 3.70 NA 0.00 4.55 5.56 NA 0.00 5.88 0.00 NA 4.44 0.00 NA 2.38 8.70 4.17 3.45 NA 4.23 0.00 NA NA 0.00 0.00 5.56 1.96 0.00 5.71 5.00 6.25 NA 1.96 3.85 0.00 0.00 K intron_retention MB8.chr3R.pasa.66,Alh,I_chr3R_2927820_2933442,RI_chr3R_2946518_2946663 chr3R - chr3R_2925245_2926858 chr3R_2925244_2925245;chr3R_2926858_2926859 chr3R_2924548_2925244;chr3R_2926859_2927219 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 5.88 0.00 NA NA 7.69 0.00 10.53 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 2.56 6.06 NA 0.00 NA 0.00 0.00 0.00 NA 8.33 0.00 0.00 8.70 0.00 0.00 NA 0.00 0.00 0.00 NA K alternative_donor CG2177,I_chr4_334269_334329,I_chr4_334269_334505 chr4 - chr4_334269_334324;chr4_334269_334373 chr4_334269_334329 chr4_334169_334268;chr4_334374_334429 1.01 2.22 0.00 2.23 3.45 1.47 0.00 0.62 0.93 2.50 0.00 1.28 1.27 1.43 0.00 2.15 0.00 0.00 0.91 1.55 0.00 1.67 2.82 0.00 0.00 1.14 1.85 0.00 1.23 1.59 2.06 1.30 0.93 0.75 0.00 1.35 4.17 3.70 0.00 0.83 1.32 1.61 0.00 0.00 1.37 1.01 0.00 0.72 0.55 0.00 0.00 0.00 0.00 0.00 2.08 2.13 1.61 1.03 K intron_retention OstStt3 chr3R - chr3R_20893578_20893634 chr3R_20893577_20893578;chr3R_20893634_20893635 chr3R_20893107_20893577;chr3R_20893635_20893825 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor chic,RI_chr2L_5976783_5980950,I_chr2L_5979705_5979818,I_chr2L_5979705_5979941,RI_chr2L_5979705_5979951,I_chr2L_5979705_5979953,I_chr2L_5979705_5980025,I_chr2L_5979705_5980213,I_chr2L_5979705_5980370,I_chr2L_5979705_5980558,I_chr2L_5979705_5980632,I_chr2L_5979705_5980639,RI_chr2L_5979705_5980734 chr2L - chr2L_5979705_5979939;chr2L_5979705_5979959 chr2L_5979705_5980208 chr2L_5979605_5979704;chr2L_5980209_5980475 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.22 0.22 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.36 0.27 0.31 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.34 0.00 0.00 0.00 0.14 0.00 0.00 0.30 0.00 0.00 0.16 0.00 0.23 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.24 0.00 0.19 K intron_retention FKBP59,CG4537 chr2L + chr2L_9888339_9888403 chr2L_9888338_9888339;chr2L_9888403_9888404 chr2L_9888098_9888338;chr2L_9888404_9888546 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 1.47 0.55 0.00 1.35 0.00 2.74 2.26 1.69 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 1.56 0.22 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.54 0.57 0.00 0.00 0.00 0.00 0.58 0.00 0.33 K jcn_only_AD gish chr3R + chr3R_12100608_12100675;chr3R_12100598_12100675 chr3R_12100604_12100675 chr3R_12100676_12100891;chr3R_12100535_12100597 65.71 NA NA 68.00 NA NA 66.67 58.33 71.43 86.36 NA 61.29 NA NA NA NA NA NA NA 62.50 NA NA NA NA NA NA NA NA NA 64.52 62.96 NA 65.00 61.90 NA NA NA NA NA 72.09 NA 55.00 NA 75.00 NA 77.78 NA 60.00 80.95 NA NA 70.00 NA NA NA NA NA 65.71 K intron_retention CG8412,I_chr3R_5583152_5583200 chr3R + chr3R_5583372_5583424 chr3R_5583371_5583372;chr3R_5583424_5583425 chr3R_5583218_5583371;chr3R_5583425_5583796 4.22 0.00 0.00 22.22 0.00 14.29 6.67 0.00 2.70 0.00 NA 0.00 0.00 NA 5.56 NA NA NA NA 4.44 NA 11.43 10.71 6.25 8.33 NA 14.29 4.76 17.39 0.00 0.00 NA 14.29 0.00 20.00 22.22 6.67 0.00 4.55 14.81 10.00 3.23 NA 0.00 3.85 0.00 0.00 6.67 0.00 4.00 10.00 0.00 NA 12.50 0.00 0.00 0.00 5.56 K alternative_acceptor wfs1 chr3R - chr3R_18515737_18515796 chr3R_18515740_18515796 chr3R_18515797_18515895;chr3R_18514175_18515736 53.33 64.71 48.15 53.85 52.17 36.36 54.55 57.14 58.54 56.25 53.33 54.55 50.00 42.86 58.33 57.14 61.90 47.62 72.41 52.83 66.67 51.28 44.44 50.00 50.00 57.14 42.86 50.00 52.17 51.85 50.00 50.00 55.17 46.88 62.50 45.45 62.50 62.50 57.89 56.25 52.00 55.00 61.11 51.72 47.83 54.55 46.15 51.72 52.63 55.00 60.00 69.23 60.00 40.00 62.50 47.06 29.41 63.16 K intron_retention CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1524358_1524424 chr3L_1524357_1524358;chr3L_1524424_1524425 chr3L_1524195_1524357;chr3L_1524425_1524585 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.36 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention yps,I_chr3L_12115255_12115669,E_chr3L_12115874_12116660,I_chr3L_12115877_12115936 chr3L - chr3L_12115868_12116047 chr3L_12115867_12115868;chr3L_12116047_12116048 chr3L_12115777_12115867;chr3L_12116048_12116674 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.36 100.00 100.00 K intron_retention RI_chr3R_5165997_5180143,CG33936,noncoding_15544,I_chr3R_5167726_5180143,RI_chr3R_5183458_5183705 chr3R + chr3R_5167648_5167941 chr3R_5167647_5167648;chr3R_5167941_5167942 chr3R_5167626_5167647;chr3R_5167942_5167998 100.00 100.00 100.00 99.30 100.00 100.00 100.00 99.21 99.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.08 99.28 99.39 100.00 100.00 100.00 99.19 100.00 100.00 99.02 100.00 100.00 100.00 99.32 97.96 100.00 99.57 100.00 100.00 100.00 100.00 98.41 100.00 100.00 99.57 100.00 100.00 100.00 98.63 100.00 100.00 99.63 98.90 99.03 100.00 98.68 100.00 99.31 100.00 98.85 100.00 K jcn_only_AD F_chr3R_19799277_19802225,CG5902,Rab7 chr3R + chr3R_19812438_19812753 chr3R_19812669_19812753 chr3R_19812754_19812932;chr3R_19812343_19812437 32.41 45.24 22.22 25.33 24.32 18.31 29.66 18.98 17.68 32.79 18.18 31.21 13.11 16.05 17.50 13.64 19.28 56.14 19.77 26.13 27.38 35.48 31.65 38.58 25.93 19.05 42.86 40.32 61.64 51.47 31.58 50.98 74.19 25.90 48.00 47.37 32.41 40.95 35.77 45.98 77.78 28.92 20.29 37.17 47.76 56.63 38.24 84.51 23.17 31.58 37.74 43.18 42.55 42.11 26.04 53.85 28.44 69.09 K jcn_only_AA CG7369 chr3L + chr3L_22735652_22738488 chr3L_22735652_22738485 chr3L_22734812_22735651;chr3L_22738489_22739986 85.18 NA NA NA NA NA NA NA 89.66 NA NA NA NA NA NA NA NA NA NA 77.27 NA NA 87.50 NA NA NA NA NA NA NA NA NA NA 82.76 NA NA 82.86 NA NA NA NA 70.00 NA NA NA NA NA NA 90.00 NA 88.46 NA NA NA NA NA NA NA K intron_retention gish,RI_chr3R_12118557_12122383 chr3R + chr3R_12121543_12122383 chr3R_12121542_12121543;chr3R_12122383_12122384 chr3R_12121448_12121542;chr3R_12122384_12122483 27.27 33.33 21.88 19.05 47.06 28.57 30.30 35.71 34.12 0.00 35.71 25.00 32.00 29.17 27.27 20.37 33.33 21.43 31.25 10.98 15.38 12.00 40.00 27.78 28.57 29.41 33.33 29.41 44.44 29.03 25.00 17.65 23.08 38.60 27.59 25.00 26.67 41.67 15.38 26.09 20.00 29.63 40.00 44.00 20.00 26.92 11.11 28.12 20.69 18.18 24.14 23.08 25.00 13.33 22.73 35.29 27.27 25.81 K intron_retention CG7713 chr3R + chr3R_13621362_13621422 chr3R_13621361_13621362;chr3R_13621422_13621423 chr3R_13621083_13621361;chr3R_13621423_13621522 0.00 NA NA 4.76 NA NA NA 0.00 4.76 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA 14.29 NA 12.50 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA 11.76 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 10.53 NA K intron_retention CG16721 chrX + chrX_5775904_5775967 chrX_5775903_5775904;chrX_5775967_5775968 chrX_5775419_5775903;chrX_5775968_5776268 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG7203,LKR,I_chr2L_7795654_7795717 chr2L - chr2L_7795654_7795774 chr2L_7795654_7795717 chr2L_7795554_7795653;chr2L_7795775_7795817 0.86 0.24 0.59 0.25 0.82 0.24 2.03 0.59 0.53 1.27 0.93 0.71 0.34 0.97 0.34 0.40 1.42 0.25 0.86 0.76 1.34 0.52 1.15 0.38 1.00 0.64 0.69 1.06 1.52 0.61 2.67 1.58 0.87 1.08 0.57 0.00 0.88 0.44 0.25 0.39 0.00 0.97 1.06 2.19 1.11 0.87 0.29 0.00 1.06 3.12 1.08 0.90 0.00 1.69 1.57 0.71 1.05 1.22 K intron_retention CG31694,E_chr2L_2869392_2871250,Prx6005 chr2L - chr2L_2869551_2870688 chr2L_2869550_2869551;chr2L_2870688_2870689 chr2L_2869323_2869550;chr2L_2870689_2870932 0.00 0.00 0.00 1.06 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 1.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 K intron_retention ytr,noncoding_8992,RI_chr2R_19738391_19738783 chr2R - chr2R_19736145_19736238 chr2R_19736144_19736145;chr2R_19736238_19736239 chr2R_19735655_19736144;chr2R_19736239_19736276 100.00 100.00 100.00 100.00 100.00 99.32 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD foi,I_chr3L_8520658_8520733,I_chr3L_8524905_8524976 chr3L + chr3L_8518490_8523659;chr3L_8518805_8523659 chr3L_8518753_8523659 chr3L_8523660_8524249;chr3L_8518407_8518489 1.28 1.18 2.04 1.41 1.18 2.20 0.78 1.27 2.02 1.22 1.10 1.44 1.11 2.97 2.42 1.78 1.01 0.00 1.06 0.63 0.00 1.67 2.78 3.92 0.00 3.57 2.22 4.90 3.90 0.87 1.49 1.25 0.00 0.63 0.00 0.00 4.81 3.49 4.08 1.48 0.00 2.22 1.18 0.00 0.00 2.25 2.63 1.02 4.11 1.61 0.81 1.28 0.00 0.00 1.99 2.63 1.41 0.00 K alternative_acceptor su(s),chrX_531053_531420.0,chrX_531653_531971.0 chrX + chrX_530313_532495 chrX_530313_532365 chrX_529989_530312;chrX_532496_532753 100.00 100.00 100.00 92.31 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 NA NA 85.71 91.67 NA 100.00 94.44 100.00 100.00 87.50 NA 100.00 100.00 NA 95.83 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 83.33 100.00 K intron_retention CG3626 chrX + chrX_4263145_4263206 chrX_4263144_4263145;chrX_4263206_4263207 chrX_4262847_4263144;chrX_4263207_4263413 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.31 1.30 0.00 3.70 1.96 3.33 0.00 7.41 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.83 1.06 7.41 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG14450,noncoding_14201 chr3L - chr3L_22720578_22720631 chr3L_22720578_22720627 chr3L_22720157_22720577;chr3L_22720632_22720843 9.52 NA NA NA NA NA NA NA 10.34 NA NA 13.79 NA NA NA NA NA NA NA 10.71 NA NA 9.52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 7.14 NA NA NA NA NA NA 7.14 9.09 NA NA NA NA NA NA 9.52 9.52 K alternative_last_exon AP-1sigma,I_chr3R_19786283_19787772 chr3R + chr3R_19785316_19786619;chr3R_19785316_19785614 chr3R_19785316_19787772 chr3R_19786620_19787225;chr3R_19785615_19785954 chr3R_19787773_19788299 chr3R_19785178_19785315 23.14 25.64 17.83 26.40 26.32 26.53 21.09 20.95 23.93 37.74 6.48 17.32 12.20 23.62 19.67 25.51 21.70 19.81 22.60 13.01 10.64 24.69 22.29 25.58 18.39 15.00 21.01 14.14 26.51 16.50 19.05 26.51 26.14 23.14 27.78 16.98 19.32 20.24 21.51 19.39 22.43 23.21 21.55 23.91 26.67 27.54 23.85 27.27 24.51 25.00 21.15 25.00 32.88 28.28 19.87 26.96 29.46 41.72 K intron_retention CG7523 chr3R - chr3R_13496065_13496126 chr3R_13496064_13496065;chr3R_13496126_13496127 chr3R_13495788_13496064;chr3R_13496127_13496259 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.31 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD CG16971,CG33229,I_chr3L_225856_225909,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_224779_224972;chr3L_224886_224972 chr3L_224184_224972 chr3L_224973_225140;chr3L_224174_224183 97.31 94.91 100.00 100.00 100.00 100.00 97.23 98.93 96.98 92.93 96.74 97.24 100.00 97.47 100.00 94.00 100.00 100.00 96.89 97.25 97.82 93.51 89.92 100.00 92.31 92.54 78.57 86.25 80.65 100.00 97.87 100.00 92.98 96.77 100.00 100.00 92.20 100.00 92.89 92.94 92.54 96.49 97.47 100.00 100.00 94.47 100.00 95.41 96.89 85.23 79.81 100.00 100.00 NA 100.00 100.00 100.00 97.38 K intron_retention CG9086,CEI_chrX_16859981_16861527,I_chrX_16861895_16862053 chrX - chrX_16857300_16857735 chrX_16857299_16857300;chrX_16857735_16857736 chrX_16856965_16857299;chrX_16857736_16857753 5.56 NA NA 3.33 NA NA 0.00 6.45 13.33 NA NA 12.50 NA NA NA 0.00 NA NA 0.00 NA NA NA 5.56 NA NA NA NA NA NA NA 5.56 NA NA 6.25 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 8.00 NA NA NA NA NA 0.00 NA NA NA K alternative_acceptor Tif-IA,RI_chr2L_22250854_22257652 chr2L + chr2L_22253333_22253386;chr2L_22253333_22253421 chr2L_22253333_22253424 chr2L_22253256_22253332;chr2L_22253425_22253685 1.32 1.27 5.71 1.04 5.71 3.28 5.34 2.63 0.75 4.55 0.00 0.73 1.43 5.13 1.23 0.61 1.54 0.00 0.00 0.93 4.55 3.12 2.15 1.10 2.17 1.52 1.38 1.59 3.85 2.17 2.54 0.00 0.00 0.63 0.00 1.85 0.00 0.00 4.29 0.91 0.00 1.53 1.32 0.00 3.57 1.16 2.17 1.89 1.34 1.41 0.88 0.00 0.00 0.00 2.30 0.00 1.28 0.00 K intron_retention shn chr2R + chr2R_7092334_7095749 chr2R_7092333_7092334;chr2R_7095749_7095750 chr2R_7092068_7092333;chr2R_7095750_7097362 0.00 NA NA NA NA NA NA NA 5.56 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Ucrh,CREFI_chr3LHet_606442_607073 chr3LHet + chr3LHet_606253_606349 chr3LHet_606275_606349 chr3LHet_606350_606441;chr3LHet_606239_606252 91.35 87.14 91.35 89.14 89.41 87.50 93.79 93.13 92.23 96.67 90.32 89.22 95.74 91.74 82.58 91.24 83.00 92.55 91.80 91.95 92.77 88.57 93.10 91.67 100.00 89.47 100.00 NA 97.50 NA 86.42 89.71 92.98 88.55 NA 87.50 94.12 90.00 96.15 98.11 94.37 90.34 88.98 92.31 85.48 92.71 97.56 86.44 89.76 89.23 NA 91.30 NA NA 88.39 98.28 100.00 85.33 K alternative_last_exon AP-1sigma,I_chr3R_19786283_19787772 chr3R + chr3R_19785316_19787772;chr3R_19785316_19785614 chr3R_19785316_19786619 chr3R_19787773_19788299;chr3R_19785615_19785954 chr3R_19786620_19787225 chr3R_19785178_19785315 52.90 52.99 51.16 48.00 50.00 45.92 48.05 51.38 52.13 50.94 70.37 58.01 57.72 47.24 50.82 46.50 47.17 59.43 46.58 61.71 70.21 49.38 53.01 51.16 57.47 55.00 52.90 57.58 48.19 60.19 50.34 56.63 53.41 47.11 48.89 55.66 62.50 54.76 58.06 53.06 60.75 50.21 47.41 53.62 55.56 58.68 58.72 47.27 49.01 55.65 51.28 46.15 50.68 54.55 49.67 56.52 55.81 44.37 K jcn_only_AD CG11880,I_chr3R_24949827_24951052,CE_chr3R_24962426_24962797 chr3R + chr3R_24949212_24949522;chr3R_24949222_24949522 chr3R_24949202_24949522 chr3R_24949523_24949826;chr3R_24949179_24949201 75.87 68.63 72.22 75.89 84.00 75.93 79.33 78.17 80.35 71.88 76.56 73.49 74.16 78.05 76.40 77.86 79.35 77.78 84.13 70.11 68.75 85.19 75.68 70.00 77.78 74.71 58.00 90.91 75.00 61.90 72.45 80.65 83.72 78.12 73.33 80.00 84.62 NA 72.73 69.66 70.59 82.66 80.23 70.59 73.91 81.13 68.18 82.05 75.84 67.50 82.22 59.46 86.96 79.17 72.00 64.52 63.33 71.05 K jcn_only_AD Syx4,I_chrX_2635555_2635621,I_chrX_2636831_2636971 chrX - chrX_2633579_2633742;chrX_2633579_2635455 chrX_2633579_2633652 chrX_2633330_2633578;chrX_2635456_2635529 0.00 0.00 1.06 0.00 0.00 0.00 2.27 0.71 0.63 4.55 1.19 2.36 0.00 0.00 0.00 0.87 1.41 0.00 0.00 0.61 0.00 0.00 1.54 0.00 2.56 1.47 2.44 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.00 K cassette lz chrX + chrX_9188053_9196002 chrX_9188053_9189309;chrX_9189673_9196002 chrX_9189310_9189672 chrX_9187964_9188052;chrX_9196003_9197046 100.00 NA NA 100.00 NA 100.00 NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA 100.00 NA 83.33 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA NA 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 100.00 NA NA NA 100.00 100.00 100.00 85.71 K alternative_acceptor rok,RI_chrX_16526333_16526477 chrX - chrX_16524596_16526477 chrX_16526333_16526477 chrX_16526478_16526577;chrX_16521967_16524595 2.00 2.00 2.08 1.54 2.17 2.38 2.90 1.03 1.59 4.76 2.70 1.32 1.85 2.27 1.47 3.57 2.56 1.89 1.92 2.60 0.00 1.19 1.49 1.61 0.00 2.00 2.82 7.41 6.90 0.00 1.64 3.57 2.00 1.25 2.27 2.00 0.00 1.69 1.12 2.82 3.70 1.55 2.04 1.72 3.23 2.78 3.12 2.00 0.95 5.56 1.27 2.27 0.00 3.33 1.49 2.94 3.45 3.57 K jcn_only_AA Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3295244 chr2R_3294591_3295244 chr2R_3295245_3295302;chr2R_3294491_3294565 0.00 NA NA 0.00 NA NA 0.00 NA 2.56 NA NA 4.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 9.52 NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 K intron_retention I_chr3L_3223943_3224313,CG11505 chr3L + chr3L_3232407_3232466 chr3L_3232406_3232407;chr3L_3232466_3232467 chr3L_3232301_3232406;chr3L_3232467_3232535 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.37 100.00 100.00 99.32 100.00 100.00 100.00 99.15 100.00 100.00 100.00 99.36 100.00 99.03 100.00 100.00 100.00 100.00 100.00 98.81 98.99 99.12 100.00 100.00 99.26 99.18 100.00 100.00 98.85 100.00 100.00 100.00 100.00 100.00 100.00 98.73 100.00 100.00 95.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention pgant3,I_chr2R_2947729_2947783 chr2R - chr2R_2948422_2948727 chr2R_2948421_2948422;chr2R_2948727_2948728 chr2R_2948321_2948421;chr2R_2948728_2949207 3.85 0.00 3.17 4.17 9.30 0.00 3.12 3.57 5.26 7.41 6.12 4.44 0.00 3.23 0.00 4.44 0.00 1.96 6.98 3.31 0.00 14.94 4.76 2.86 4.55 0.00 11.11 7.55 4.08 5.66 14.81 0.00 4.00 3.45 0.00 6.98 4.55 3.39 6.06 2.27 0.00 2.73 6.25 2.63 5.13 2.78 0.00 1.69 6.32 11.76 6.90 2.00 3.85 5.88 4.65 2.63 5.88 0.00 K intron_retention bif,I_chrX_11581793_11583233,REI_chrX_11585551_11586831 chrX + chrX_11583577_11584844 chrX_11583576_11583577;chrX_11584844_11584845 chrX_11583234_11583576;chrX_11584845_11585550 65.16 NA NA NA NA NA NA NA 63.64 NA NA NA NA NA NA NA NA NA NA NA NA 47.06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Elongin-B,RI_chr3R_16404530_16404635 chr3R - chr3R_16404515_16404635 chr3R_16404514_16404515;chr3R_16404635_16404636 chr3R_16404430_16404514;chr3R_16404636_16404735 0.48 0.48 0.55 1.98 1.57 0.00 1.72 0.48 0.00 0.00 0.75 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.71 0.40 0.81 0.71 0.00 2.73 2.17 0.48 0.48 1.31 0.00 0.47 0.49 1.15 2.13 0.00 1.02 0.68 0.40 0.00 0.00 0.00 0.54 1.24 0.64 0.97 0.00 0.89 0.00 0.58 0.00 0.00 0.97 0.00 0.84 0.44 0.95 K jcn_only_AA CG11155,I_chr4_1152220_1152710,I_chr4_1152585_1152687 chr4 + chr4_1156111_1156206 chr4_1156111_1156164 chr4_1155985_1156110;chr4_1156207_1156239 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Aats-his,noncoding_24608,I_chrX_18409716_18411646,EI_chrX_18409716_18414750 chrX + chrX_18409716_18411500 chrX_18409715_18409716;chrX_18411500_18411501 chrX_18409616_18409715;chrX_18411501_18411772 25.82 NA NA NA NA NA 23.08 NA 15.00 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA 28.57 NA NA NA NA 20.00 NA NA NA NA NA NA NA N jcn_only_AA RpL13A,I_chr3R_1450243_1451235,EI_chr3R_1450853_1451054,snoRNA:Me28S-U2134b,snoRNA:Me28S-U2134a chr3R + chr3R_1450853_1451235;chr3R_1450853_1451054 chr3R_1450853_1451134 chr3R_1450753_1450852;chr3R_1451236_1451335 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG17490 chr2L + chr2L_22431120_22432684;chr2L_22431020_22432684;chr2L_22431301_22432684 chr2L_22431088_22432684 chr2L_22432685_22433056;chr2L_22431014_22431019 16.89 NA NA NA NA NA NA 13.79 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 K intron_retention MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17389811_17389890 chr2R_17389810_17389811;chr2R_17389890_17389891 chr2R_17389782_17389810;chr2R_17389891_17389984 96.08 94.44 95.65 98.00 100.00 100.00 95.00 100.00 100.00 94.12 100.00 94.59 100.00 100.00 96.43 100.00 94.74 100.00 97.22 96.43 100.00 100.00 94.12 94.74 100.00 100.00 94.74 87.50 90.91 100.00 92.68 92.86 95.00 98.00 96.00 95.00 91.67 92.86 100.00 92.31 100.00 97.83 96.88 92.31 83.33 96.55 93.75 96.43 96.97 96.00 96.00 94.44 NA 100.00 96.15 95.00 92.00 87.50 K intron_retention CG17219,RFI_chr2L_3030576_3030666,GABPI chr2L + chr2L_3029933_3029984 chr2L_3029932_3029933;chr2L_3029984_3029985 chr2L_3029373_3029932;chr2L_3029985_3030337 0.00 NA NA 29.41 NA NA NA 0.00 5.71 NA NA 0.00 0.00 NA NA 19.05 NA NA 0.00 3.23 NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 0.00 4.76 0.00 NA NA 0.00 NA 0.00 3.57 NA NA NA 0.00 NA 0.00 NA 0.00 5.00 K intron_retention CG6608,I_chr3R_6706829_6707624 chr3R - chr3R_6706829_6707284 chr3R_6706828_6706829;chr3R_6707284_6707285 chr3R_6706729_6706828;chr3R_6707285_6707522 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522932_523360;chrX_522949_523360 chrX_522912_523360 chrX_523361_523436;chrX_522849_522911 94.87 93.23 96.63 93.97 92.86 93.90 78.46 94.58 92.41 95.08 93.27 96.00 92.73 95.59 95.88 95.91 94.07 95.20 96.00 94.11 97.09 85.51 95.89 94.51 88.02 81.40 95.73 91.06 97.60 95.29 96.88 92.91 97.78 96.07 94.20 95.61 96.02 95.26 93.90 94.24 92.56 92.88 94.44 97.23 96.92 94.75 95.77 97.55 93.81 94.86 95.18 94.04 95.98 94.87 98.26 94.51 95.13 97.29 K jcn_only_AA CG4630,RI_chr2R_9103472_9103634,I_chr2R_9103765_9103852,I_chr2R_9103956_9104108,RI_chr2R_9104206_9104265,I_chr2R_9105809_9106399 chr2R - chr2R_9105705_9106592 chr2R_9105809_9106592 chr2R_9106593_9106722;chr2R_9105094_9105704 4.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.06 4.17 NA NA 0.00 NA NA NA 4.00 NA NA NA 2.56 10.00 NA NA 12.12 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG31633 chr2L - chr2L_6656131_6656195 chr2L_6656142_6656195 chr2L_6656196_6656264;chr2L_6656065_6656130 94.29 NA NA 90.48 NA NA 96.15 NA 92.59 NA NA 82.61 NA NA NA 93.33 NA NA NA 85.29 NA 98.15 95.45 95.45 NA NA 80.00 92.98 97.56 84.00 77.27 96.00 96.15 90.91 95.24 93.55 96.15 NA 96.77 94.29 NA 79.17 NA 97.22 NA 92.50 100.00 100.00 NA 90.00 88.57 85.19 86.36 95.00 NA 96.15 96.15 100.00 K cassette Pur-alpha,I_chr4_581447_585166 chr4 + chr4_581447_585166 chr4_581447_584986;chr4_585106_585166 chr4_584987_585105 chr4_581366_581446;chr4_585167_585266 100.00 NA 100.00 92.31 NA 100.00 92.86 95.24 94.44 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 83.33 NA NA NA NA 90.91 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 100.00 100.00 NA NA NA NA 92.86 NA 100.00 NA NA NA 90.91 NA NA NA K alternative_donor CG15072,RI_chr2R_14576128_14579545,I_chr2R_14589693_14590032 chr2R + chr2R_14575874_14579545;chr2R_14576017_14579545;chr2R_14576049_14579545;chr2R_14576247_14579545;chr2R_14576154_14579545 chr2R_14576056_14579545 chr2R_14579546_14579571;chr2R_14575805_14575873 13.33 16.67 0.00 38.46 0.00 16.67 17.65 22.22 24.00 12.50 11.11 13.33 29.41 25.00 12.50 16.67 22.22 28.57 20.00 15.00 0.00 28.57 0.00 20.00 0.00 25.00 14.29 0.00 14.29 28.57 22.22 0.00 9.09 33.33 8.33 12.50 12.50 50.00 20.00 17.65 0.00 7.14 11.11 9.09 0.00 25.00 0.00 11.11 12.50 0.00 0.00 20.00 0.00 0.00 50.00 0.00 25.00 11.11 K alternative_acceptor lap,I_chr3R_3017854_3019314 chr3R + chr3R_3017854_3018261 chr3R_3017854_3018213 chr3R_3017754_3017853;chr3R_3018262_3018376 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention REI_chr3L_1545423_1545473,I_chr3L_1545606_1545652,CG12099,CG7879 chr3L - chr3L_1557715_1557788 chr3L_1557714_1557715;chr3L_1557788_1557789 chr3L_1556272_1557714;chr3L_1557789_1558214 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 1.61 1.55 0.00 2.78 0.00 0.00 0.88 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 1.46 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention wech,I_chr2R_3373673_3377324,I_chr2R_3376705_3376837 chr2R - chr2R_3373321_3373389 chr2R_3373320_3373321;chr2R_3373389_3373390 chr2R_3371367_3373320;chr2R_3373390_3373672 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 4.35 NA 0.00 NA 0.00 0.00 NA NA NA 0.00 3.03 NA 0.00 0.00 3.23 0.00 0.00 0.00 8.33 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.38 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 K intron_retention Exp6,I_chrX_369347_369771,I_chrX_369347_369797 chrX - chrX_369347_369801 chrX_369346_369347;chrX_369801_369802 chrX_369247_369346;chrX_369802_369871 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 NA 0.00 2.44 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 6.67 NA NA 0.00 NA 0.00 0.00 K alternative_donor CG4389,I_chr2L_9576230_9576665 chr2L - chr2L_9576230_9576665;chr2L_9576230_9576635 chr2L_9576230_9576517 chr2L_9576130_9576229;chr2L_9576666_9576755 100.00 98.61 97.70 100.00 100.00 100.00 100.00 99.35 98.94 100.00 100.00 100.00 95.35 100.00 100.00 100.00 98.61 98.31 100.00 99.35 100.00 100.00 100.00 100.00 100.00 98.68 100.00 100.00 98.18 100.00 100.00 100.00 98.39 100.00 100.00 100.00 95.12 100.00 98.51 99.07 97.50 99.36 98.51 100.00 97.73 98.61 100.00 98.63 99.24 100.00 100.00 98.36 100.00 100.00 100.00 100.00 97.83 100.00 K alternative_donor Fps85D,I_chr3R_5194729_5194776,I_chr3R_5216796_5218450 chr3R - chr3R_5195433_5198098 chr3R_5195433_5196736 chr3R_5195058_5195432;chr3R_5198099_5198299 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 80.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13415611_13416126 chr2R_13415611_13415817;chr2R_13415881_13416126 chr2R_13415818_13415880 chr2R_13415328_13415610;chr2R_13416127_13416357 100.00 100.00 100.00 100.00 100.00 96.43 97.44 100.00 98.73 100.00 100.00 98.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.04 100.00 100.00 100.00 97.44 97.96 100.00 93.48 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 K intron_retention babo chr2R + chr2R_4842673_4846611 chr2R_4842672_4842673;chr2R_4846611_4846612 chr2R_4842648_4842672;chr2R_4846612_4846839 100.00 NA NA 100.00 100.00 NA 100.00 NA 94.74 NA NA 100.00 NA NA 100.00 93.75 NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA NA 100.00 NA NA 93.33 NA NA 100.00 NA 90.00 NA NA 94.12 NA 90.91 NA NA NA NA 94.74 NA 100.00 NA NA NA 100.00 NA NA NA K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2814327_2817753 chr2R_2814327_2814894;chr2R_2815654_2816013;chr2R_2816342_2816577;chr2R_2816779_2817354;chr2R_2817604_2817753 chr2R_2814895_2815653;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817355_2817603 chr2R_2814227_2814326;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 K jcn_only_AA MB8.chr3R.pasa.66,Alh,I_chr3R_2927820_2933442,RI_chr3R_2946518_2946663 chr3R - chr3R_2925245_2926858 chr3R_2926268_2926858 chr3R_2926859_2927219;chr3R_2924548_2925244 0.00 0.00 0.00 3.45 NA NA 0.00 0.00 0.00 0.00 NA 14.89 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 2.22 0.00 NA NA NA 3.23 4.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 3.70 0.00 NA 0.00 NA 4.55 0.00 0.00 NA 3.12 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA N alternative_acceptor Akap200,I_chr2L_8415846_8426873,I_chr2L_8417052_8426873,I_chr2L_8420065_8426872,I_chr2L_8426446_8426873 chr2L + chr2L_8420065_8426873 chr2L_8420065_8421966 chr2L_8419965_8420064;chr2L_8426874_8426972 1.06 1.20 1.23 0.66 1.06 0.69 1.29 0.64 1.65 0.68 1.09 1.21 1.07 1.38 0.80 1.47 1.38 1.23 0.91 1.40 0.93 2.26 1.61 0.82 1.29 0.78 1.62 4.05 1.36 0.85 0.90 0.51 1.15 1.08 1.55 1.35 1.63 1.09 0.87 1.82 1.04 0.96 0.97 1.33 0.34 0.47 0.31 1.36 0.94 0.52 1.03 1.49 0.54 0.58 0.89 0.82 0.62 0.50 K intron_retention par-1,I_chr2R_15359242_15360944,I_chr2R_15359251_15360944,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15360670_15360944 chr2R_15360669_15360670;chr2R_15360944_15360945 chr2R_15360501_15360669;chr2R_15360945_15360953 3.02 4.22 1.38 4.14 4.71 2.44 3.82 2.92 2.84 2.46 6.67 2.23 2.27 1.96 3.27 1.83 4.17 2.15 3.49 3.02 2.15 1.72 4.17 4.90 3.50 4.21 3.29 6.45 2.63 3.00 2.11 3.60 2.44 2.59 3.62 2.51 2.63 3.86 2.17 3.61 3.23 2.02 1.02 4.81 2.06 4.24 3.91 1.27 2.80 4.94 4.42 4.46 3.25 2.70 2.73 3.08 3.61 2.84 K intron_retention Vrp1,I_chr2R_17996482_17997091,I_chr2R_17996511_17997091,I_chr2R_17997529_17997692 chr2R - chr2R_17996485_17997091 chr2R_17996484_17996485;chr2R_17997091_17997092 chr2R_17996474_17996484;chr2R_17997092_17997191 100.00 NA NA NA NA NA 100.00 NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA 96.23 NA 100.00 NA NA 100.00 90.91 NA NA NA NA NA NA NA NA 91.67 NA NA 100.00 NA 100.00 NA 100.00 NA NA NA NA NA 92.86 100.00 NA NA NA NA NA NA NA K alternative_donor CG4293,RI_chrX_423385_423664,I_chrX_423385_423676 chrX - chrX_423385_423442;chrX_423385_423676 chrX_423385_423664 chrX_423285_423384;chrX_423677_423764 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG5850,I_chr2L_9963013_9963451 chr2L - chr2L_9961615_9961794 chr2L_9961615_9961728 chr2L_9961359_9961614;chr2L_9961795_9962059 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 98.39 95.24 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 K intron_retention CG17271,I_chr3R_16645217_16645392,RI_chr3R_16647104_16647149 chr3R - chr3R_16646166_16646371 chr3R_16646165_16646166;chr3R_16646371_16646372 chr3R_16645280_16646165;chr3R_16646372_16646520 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pp1alpha-96A chr3R + chr3R_20344430_20344565 chr3R_20344429_20344430;chr3R_20344565_20344566 chr3R_20343959_20344429;chr3R_20344566_20344914 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention hkl chr2L + chr2L_19046143_19046214 chr2L_19046142_19046143;chr2L_19046214_19046215 chr2L_19045522_19046142;chr2L_19046215_19047047 93.75 89.47 86.49 100.00 100.00 97.06 85.94 97.14 94.44 80.95 87.50 93.24 100.00 100.00 93.75 96.55 97.14 88.89 97.83 94.32 92.31 84.21 98.39 97.87 86.21 97.22 100.00 89.29 84.62 93.75 95.12 96.77 88.89 93.85 96.55 100.00 95.35 96.97 91.89 92.16 96.88 91.03 96.67 90.24 82.35 97.67 92.00 89.13 93.33 90.00 91.07 84.85 92.11 92.68 97.83 97.78 87.76 90.00 K alternative_donor Fibp,RI_chr3L_19810268_19810326 chr3L - chr3L_19810268_19810330 chr3L_19810268_19810326 chr3L_19810168_19810267;chr3L_19810331_19810426 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 2.13 K alternative_acceptor Lsd-1,CG10375 chr3R + chr3R_19592030_19592098 chr3R_19592030_19592095 chr3R_19591852_19592029;chr3R_19592099_19592453 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 87.50 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG34417,I_chrX_6471146_6471201,I_chrX_6477377_6479725,I_chrX_6481112_6482099,RI_chrX_6482284_6482336 chrX + chrX_6479984_6482099 chrX_6479983_6479984;chrX_6482099_6482100 chrX_6479881_6479983;chrX_6482100_6482199 0.00 0.00 0.00 0.00 0.00 NA 13.64 0.00 6.06 NA NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 7.69 0.00 NA NA NA 4.76 NA NA 0.00 14.29 NA 2.94 NA 0.00 5.56 NA 0.00 NA 6.67 0.00 13.04 0.00 5.56 4.55 0.00 6.67 NA NA NA 4.55 4.00 0.00 NA K jcn_only_AD Rab30,I_chr2L_7032178_7032236 chr2L - chr2L_7032178_7032244;chr2L_7032178_7032236;chr2L_7032178_7032321 chr2L_7032178_7032310 chr2L_7032078_7032177;chr2L_7032322_7032336 62.07 70.00 65.71 61.11 NA 85.71 59.52 55.00 61.54 55.00 42.86 56.86 42.86 NA 66.67 77.78 75.00 60.87 78.79 66.04 77.78 62.07 63.89 65.52 68.18 52.38 55.17 38.10 50.00 61.76 78.26 65.38 73.17 50.00 NA 60.71 52.94 73.33 48.57 62.71 56.41 63.46 66.67 57.14 63.64 53.06 45.45 68.75 66.67 62.96 62.75 NA NA 52.38 61.29 47.62 NA 66.67 K alternative_donor Imp,I_chrX_10699490_10700695,RI_chrX_10699665_10700501,RI_chrX_10699665_10700695 chrX - chrX_10699503_10700474;chrX_10699503_10700695 chrX_10699503_10700501 chrX_10699299_10699502;chrX_10700696_10700795 76.21 71.43 100.00 73.68 75.00 75.00 84.21 79.31 77.42 NA 88.89 69.57 80.00 66.67 66.67 72.00 85.71 87.50 85.71 88.89 50.00 NA 75.00 NA NA 60.00 80.00 NA NA NA 66.67 NA NA 83.33 NA NA NA NA NA 80.00 NA 86.67 69.23 NA NA NA NA 75.00 69.57 NA NA NA NA NA 85.71 NA NA NA K jcn_only_AD trbd chr3R - chr3R_5535271_5536202;chr3R_5535271_5536695 chr3R_5535271_5535611 chr3R_5535110_5535270;chr3R_5536696_5536730 4.17 4.55 10.71 16.00 5.00 NA 8.57 0.00 0.00 NA 25.00 16.28 0.00 NA 9.68 0.00 0.00 16.67 8.57 0.00 NA 30.43 3.23 4.00 NA 0.00 3.85 NA 8.00 NA NA NA 2.94 11.11 5.00 0.00 4.17 4.17 0.00 2.44 NA 6.67 NA 0.00 NA 0.00 NA NA 3.45 8.33 0.00 0.00 NA NA 9.09 NA 4.76 NA K intron_retention CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2442961_2443389 chr3L_2442960_2442961;chr3L_2443389_2443390 chr3L_2442909_2442960;chr3L_2443390_2443838 0.00 0.00 0.00 2.63 0.00 0.00 26.47 0.00 2.63 0.00 4.00 2.63 18.18 7.69 0.00 5.26 0.00 0.00 0.00 5.56 0.00 10.48 2.04 2.78 11.63 0.00 2.56 5.51 3.28 0.00 0.00 0.00 6.82 6.25 3.23 0.00 2.22 0.00 0.00 5.56 0.00 6.78 0.00 3.70 0.00 2.78 0.00 0.00 1.85 4.17 4.17 0.00 0.00 0.00 0.00 2.70 0.00 0.00 N alternative_donor CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4987298_4987906;chr2L_4987319_4987906 chr2L_4987241_4987906 chr2L_4987907_4988048;chr2L_4987159_4987240 83.33 88.24 90.00 81.82 92.59 80.65 86.05 82.14 86.30 85.71 75.00 86.36 75.00 79.17 88.24 82.98 90.91 84.21 90.32 81.94 88.89 53.66 84.00 84.62 78.05 86.84 75.00 64.71 68.29 85.71 79.17 82.14 87.18 87.10 87.18 82.35 88.46 93.18 84.75 85.71 80.00 88.75 76.00 88.37 81.48 76.92 81.48 82.61 86.49 60.71 87.23 83.33 78.95 72.73 90.91 75.00 76.19 78.95 K jcn_only_AA CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042888_5043077;chr2L_5042891_5043077;chr2L_5042885_5043077 chr2L_5043017_5043077 chr2L_5043078_5043083 9.76 NA 23.08 6.25 NA NA 17.86 9.76 5.36 NA NA 10.42 11.76 6.25 11.11 12.73 4.55 NA 9.09 8.06 24.00 NA 3.70 4.55 NA NA NA NA NA NA 8.00 NA NA 17.07 NA NA NA NA NA NA NA 8.33 11.11 NA NA 12.00 13.04 NA 11.43 9.09 10.00 0.00 NA NA 8.33 5.00 20.00 NA K cassette CG9171,RI_chr2L_5792418_5799117,I_chr2L_5799412_5800043 chr2L - chr2L_5787985_5800043 chr2L_5787985_5799117;chr2L_5799412_5800043 chr2L_5799118_5799411 chr2L_5787965_5787984;chr2L_5800044_5800143 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 61.90 NA NA 100.00 90.00 88.89 100.00 91.67 88.89 100.00 100.00 90.91 100.00 NA 100.00 85.71 NA 100.00 100.00 NA NA NA 85.71 NA 50.00 100.00 100.00 100.00 83.33 NA NA 80.00 NA 84.62 100.00 100.00 NA 75.00 NA 100.00 92.86 NA NA 100.00 NA NA 88.89 NA NA 100.00 K alternative_acceptor R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083458_8089184;chr2L_8083458_8089393 chr2L_8083458_8089356 chr2L_8083444_8083457;chr2L_8089394_8089493 8.39 NA NA NA NA NA NA 7.69 NA 14.29 NA 10.53 NA 7.69 NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA 0.00 20.00 NA NA NA NA NA NA 18.75 NA 5.56 NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA 9.09 NA NA NA K intron_retention CG4199,I_chrX_1962457_1964222 chrX - chrX_1965614_1966582 chrX_1965613_1965614;chrX_1966582_1966583 chrX_1965393_1965613;chrX_1966583_1966728 94.28 90.00 NA 100.00 NA 90.00 90.91 91.67 100.00 100.00 NA 93.33 87.50 NA 100.00 NA NA NA 88.89 92.00 NA 100.00 93.33 94.74 NA 90.00 94.74 92.31 94.74 100.00 94.44 90.91 92.86 100.00 100.00 100.00 94.12 100.00 100.00 91.67 90.00 100.00 NA 92.31 100.00 91.67 100.00 92.31 90.00 100.00 92.86 100.00 85.71 NA 100.00 100.00 100.00 90.91 K alternative_donor CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27044867;chr3R_27044771_27045188;chr3R_27044771_27045257;chr3R_27044771_27045132;chr3R_27044771_27045027;chr3R_27044771_27045110;chr3R_27044771_27044831;chr3R_27044771_27044990 chr3R_27044771_27044895 chr3R_27044671_27044770;chr3R_27045258_27045273 0.76 0.45 0.98 0.26 0.00 0.50 0.57 0.22 0.64 2.86 0.55 0.74 0.68 0.65 0.51 0.86 0.38 0.21 0.38 0.76 0.65 0.00 7.41 6.45 7.69 0.76 9.52 7.14 2.11 2.02 0.54 0.60 0.53 0.34 3.85 1.79 4.76 6.25 2.86 1.05 1.56 0.37 0.49 0.00 0.47 0.87 7.69 0.82 0.61 8.00 4.76 4.17 0.90 6.25 0.35 11.11 5.66 0.17 K alternative_donor CG11710 chrX - chrX_20299022_20299090 chrX_20299022_20299077 chrX_20298827_20299021;chrX_20299091_20299199 71.43 72.00 77.78 76.00 76.47 81.25 65.00 60.00 72.22 61.90 80.00 71.05 61.54 75.00 76.47 73.91 66.67 73.33 65.22 72.73 64.00 75.68 63.16 78.12 54.17 62.50 70.27 76.60 72.58 73.91 60.00 75.86 80.77 69.57 80.95 71.43 64.71 65.38 65.62 76.74 62.79 68.57 66.67 70.37 69.23 71.15 73.08 75.51 57.89 75.68 69.44 77.78 76.92 66.67 68.18 71.88 61.54 71.43 K alternative_donor Cdk4,RI_chr2R_12471503_12471656 chr2R + chr2R_12467202_12468346;chr2R_12467241_12468346;chr2R_12467275_12468346;chr2R_12467474_12468346;chr2R_12467225_12468346;chr2R_12467227_12468346;chr2R_12467261_12468346;chr2R_12467039_12468346 chr2R_12467432_12468346 chr2R_12468347_12468520;chr2R_12467030_12467038 57.14 50.00 38.89 42.31 70.00 38.46 68.75 56.67 43.48 33.33 26.67 28.21 45.45 50.00 36.84 43.75 58.33 50.00 40.91 40.82 35.71 50.00 60.00 69.23 62.50 40.00 57.14 83.33 66.67 66.67 44.44 62.50 50.00 44.12 70.00 66.67 52.63 45.45 50.00 64.71 60.00 43.33 54.55 71.43 60.00 85.71 66.67 84.62 42.86 60.00 75.00 60.00 66.67 66.67 61.11 60.00 73.33 64.00 K jcn_only_AD BtbVII,I_chr3L_3150858_3150927,I_chr3L_3151185_3151263 chr3L + chr3L_3148738_3149627;chr3L_3148748_3149627 chr3L_3148688_3149627 chr3L_3149628_3150153;chr3L_3148679_3148687 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.83 100.00 NA NA NA NA NA NA NA NA 100.00 K jcn_only_AA sec23,I_chr3R_1474873_1475080,I_chr3R_1474899_1475080,I_chr3R_1474960_1475051,I_chr3R_1477727_1478102 chr3R + chr3R_1474960_1475080 chr3R_1474960_1475051 chr3R_1474924_1474959;chr3R_1475081_1475151 0.00 2.04 0.00 0.00 0.00 0.00 0.76 0.00 0.56 0.00 1.49 0.00 0.00 1.20 0.93 0.61 0.00 0.00 0.00 0.00 3.08 0.00 0.00 2.13 0.00 0.00 0.69 0.91 3.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.85 0.90 0.00 0.00 0.57 0.00 0.00 0.00 1.49 1.82 0.00 0.52 0.67 0.00 1.06 0.00 0.00 0.00 0.00 0.87 0.00 K intron_retention sec13,I_chr3R_19184824_19184875 chr3R + chr3R_19182675_19183119 chr3R_19182674_19182675;chr3R_19183119_19183120 chr3R_19182199_19182674;chr3R_19183120_19184049 0.74 0.41 1.18 1.09 0.82 0.52 0.74 0.65 0.37 1.69 0.43 0.51 1.84 0.52 0.00 0.00 0.00 0.00 0.00 0.49 1.70 0.76 1.54 2.63 2.16 0.00 1.36 0.90 2.17 0.69 0.93 0.32 0.40 1.23 1.69 0.81 1.01 1.15 1.30 0.87 1.18 0.43 0.00 0.61 0.26 0.53 0.43 0.55 0.52 1.87 1.79 1.41 0.80 1.35 0.00 1.23 0.00 0.56 K alternative_acceptor Cirl,R_chr2R_4502755_4503407,E_chr2R_4505783_4507316 chr2R + chr2R_4505967_4506035 chr2R_4505967_4506023 chr2R_4505739_4505966;chr2R_4506036_4506234 62.71 61.76 67.86 66.07 66.67 73.91 52.78 60.98 57.14 56.25 60.87 61.82 57.14 65.22 66.67 69.44 54.17 62.96 52.38 68.06 66.67 78.31 71.43 54.17 55.26 71.43 71.43 66.67 66.67 62.00 76.32 56.00 70.18 69.23 59.52 71.43 56.76 57.14 62.07 69.62 59.26 53.33 63.16 61.70 64.52 66.67 53.12 82.05 75.00 59.09 62.71 66.67 66.67 58.62 59.38 57.69 58.33 55.56 K jcn_only_AA f-cup,I_chr3R_9524004_9524059,EI_chr3R_9524613_9524789 chr3R - chr3R_9521865_9521924 chr3R_9521872_9521924 chr3R_9521925_9522068;chr3R_9521683_9521864 100.00 100.00 100.00 97.83 100.00 100.00 100.00 97.87 100.00 NA 100.00 98.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG17834 chr2L + chr2L_8535846_8535917 chr2L_8535845_8535846;chr2L_8535917_8535918 chr2L_8535824_8535845;chr2L_8535918_8536079 69.23 NA NA 69.23 NA NA 73.33 71.43 54.55 NA NA 69.23 NA 60.00 50.00 65.00 NA NA 61.54 63.64 NA NA NA NA NA NA NA NA NA NA 70.00 NA NA 69.23 NA NA NA NA NA NA NA 73.33 NA NA NA NA NA NA 76.92 NA NA NA NA NA 88.89 NA NA 69.23 K intron_retention Pegarn chr3L + chr3L_12788186_12788262 chr3L_12788185_12788186;chr3L_12788262_12788263 chr3L_12788120_12788185;chr3L_12788263_12788330 88.89 NA NA 88.89 NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA 85.71 NA 95.00 NA NA NA NA 75.00 88.89 93.75 NA NA NA 93.33 NA NA NA 77.78 90.00 80.00 68.75 90.00 53.33 NA NA 88.89 NA NA 90.00 NA 85.71 NA NA NA NA 88.89 NA NA NA K intron_retention Acyp2,CG4699 chr3R + chr3R_11618874_11618931 chr3R_11618873_11618874;chr3R_11618931_11618932 chr3R_11618764_11618873;chr3R_11618932_11619070 12.63 3.70 14.81 26.53 12.50 20.00 15.62 7.41 8.51 15.79 12.50 15.56 9.68 10.71 0.00 14.81 4.55 15.38 9.52 14.89 28.57 7.69 18.18 11.63 26.09 44.83 19.05 10.53 46.15 17.65 9.26 3.57 5.13 12.77 17.65 29.41 10.00 7.41 12.90 12.20 29.17 8.16 7.41 18.52 12.20 16.95 10.71 25.00 15.00 19.35 16.67 0.00 NA 0.00 11.76 10.42 4.48 14.04 K mutually_exclusive lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,RI_chr2L_22823579_22823640,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22818652_22831505,chr2L_22831575_22832085 chr2L_22818652_22820169,chr2L_22820498_22832085 chr2L_22831506_22831574 chr2L_22820170_22820497 chr2L_22818298_22818651;chr2L_22832086_22832154 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.24 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 K intron_retention aru,I_chr2L_862259_862314,I_chr2L_864795_867505 chr2L - chr2L_862259_862314 chr2L_862258_862259;chr2L_862314_862315 chr2L_862159_862258;chr2L_862315_862414 55.05 NA NA 92.31 NA NA NA NA NA NA NA 61.54 NA NA NA NA NA NA NA 55.56 NA 53.85 NA NA NA 66.67 NA 61.54 81.82 NA NA 46.15 NA NA NA NA 66.67 NA 45.45 36.36 84.62 41.67 NA NA 40.00 NA NA 54.55 NA NA NA NA NA NA NA NA NA 29.41 N intron_retention RpL31,CG1827 chr2R + chr2R_5475162_5475281 chr2R_5475161_5475162;chr2R_5475281_5475282 chr2R_5475113_5475161;chr2R_5475282_5475378 100.00 99.69 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.69 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.83 100.00 100.00 100.00 100.00 99.59 100.00 100.00 100.00 100.00 100.00 99.71 100.00 100.00 100.00 100.00 100.00 K cassette endoB chr2R - chr2R_15197089_15197320 chr2R_15197089_15197167;chr2R_15197204_15197320 chr2R_15197168_15197203 chr2R_15196898_15197088;chr2R_15197321_15197818 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 4.76 0.00 0.00 NA 5.00 0.00 2.56 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 7.14 0.00 6.25 0.00 2.38 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 5.00 0.00 0.00 5.88 4.35 4.55 0.00 0.00 0.00 0.00 NA 0.00 K intron_retention Pvr,I_chr2L_8226604_8228082,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8226604_8227669 chr2L_8226603_8226604;chr2L_8227669_8227670 chr2L_8226504_8226603;chr2L_8227670_8227720 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.36 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 NA 96.30 100.00 100.00 100.00 96.30 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 96.15 97.56 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 K jcn_only_AD mld,atl chr3R + chr3R_20456279_20457504 chr3R_20456473_20457504 chr3R_20457505_20457813;chr3R_20456213_20456278 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA 91.67 NA NA NA NA NA NA NA NA NA 95.24 NA NA 100.00 100.00 NA NA NA NA NA 95.65 NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA 100.00 K intron_retention RpL15 chr3LHet + chr3LHet_2397820_2398049 chr3LHet_2397819_2397820;chr3LHet_2398049_2398050 chr3LHet_2397802_2397819;chr3LHet_2398050_2398052 88.24 NA 100.00 57.89 NA NA 95.00 73.08 96.67 NA NA 88.46 100.00 90.91 NA 88.24 87.50 NA NA 95.65 NA 43.75 94.74 100.00 100.00 NA 100.00 75.00 63.64 NA 54.55 37.50 NA 68.18 NA 93.75 90.91 NA NA 31.71 35.29 60.87 87.50 40.00 60.00 63.16 88.89 36.36 73.33 100.00 100.00 100.00 50.00 90.00 NA 90.00 100.00 39.13 K intron_retention CG3800 chr2R - chr2R_18822494_18822581 chr2R_18822493_18822494;chr2R_18822581_18822582 chr2R_18822096_18822493;chr2R_18822582_18823093 99.14 98.98 98.82 99.66 100.00 99.34 99.56 99.67 99.13 99.35 99.40 99.03 100.00 100.00 99.07 99.63 99.35 97.32 98.36 99.28 99.40 93.71 99.23 97.81 99.03 100.00 99.51 99.26 98.90 98.46 98.22 99.65 99.62 99.63 97.06 96.77 99.72 99.37 99.22 98.26 99.48 99.14 98.63 98.82 99.71 98.43 99.12 99.49 98.28 99.10 99.57 97.66 98.23 98.98 99.11 98.43 98.26 99.57 K alternative_donor CG2519 chr3R - chr3R_1372457_1373328 chr3R_1372457_1373058 chr3R_1372178_1372456;chr3R_1373329_1373473 0.00 NA 7.69 3.12 NA NA NA 0.00 9.09 NA NA 4.00 0.00 NA 0.00 0.00 NA 40.00 5.88 0.00 NA 3.57 3.12 6.67 NA 0.00 NA NA 9.09 NA 0.00 NA NA 0.00 0.00 6.25 0.00 0.00 NA 4.17 NA 0.00 NA NA NA 8.33 NA 0.00 3.03 NA 0.00 NA NA NA 0.00 NA NA NA K alternative_acceptor Fak56D,F_chr2R_15323055_15323097 chr2R - chr2R_15319746_15319807 chr2R_15319752_15319807 chr2R_15319808_15319897;chr2R_15319297_15319745 100.00 NA 100.00 100.00 100.00 87.50 100.00 95.45 100.00 NA 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 90.00 93.75 NA NA NA NA NA 91.67 100.00 NA NA 87.50 100.00 100.00 90.00 95.45 NA NA NA NA 100.00 95.24 NA 100.00 88.89 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 NA NA NA 85.71 NA NA 92.86 K alternative_acceptor CG5355,I_chr2L_10413213_10413324 chr2L - chr2L_10413213_10413324 chr2L_10413220_10413324 chr2L_10413325_10413424;chr2L_10413113_10413212 99.04 100.00 100.00 98.86 97.50 100.00 97.14 98.81 99.04 96.77 96.67 98.92 97.73 100.00 100.00 100.00 100.00 100.00 97.83 98.97 100.00 100.00 98.67 100.00 96.97 100.00 100.00 98.04 97.78 97.44 100.00 100.00 98.51 98.44 97.37 100.00 98.08 100.00 100.00 97.56 100.00 99.00 100.00 98.46 100.00 100.00 97.83 98.15 98.84 96.97 100.00 100.00 96.43 100.00 100.00 100.00 98.11 100.00 K jcn_only_AD X11L,RE_chrX_17497873_17498103 chrX + chrX_17497869_17498103 chrX_17498013_17498103 chrX_17498104_17498203 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ana2,MrgBP,CG8258 chr2R - chr2R_4786818_4786871 chr2R_4786817_4786818;chr2R_4786871_4786872 chr2R_4786228_4786817;chr2R_4786872_4787717 0.00 0.00 4.76 0.00 NA 0.00 5.56 3.85 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA 0.00 2.86 NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA NA 0.00 0.00 0.00 NA NA 0.00 NA 5.26 4.35 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 10.00 NA 0.00 0.00 NA 0.00 0.00 0.00 K jcn_only_AD eIF5,noncoding_24049,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15885416_15885611;chrX_15885416_15885854;chrX_15885416_15885783 chrX_15885416_15885925 chrX_15885316_15885415;chrX_15885926_15885954 11.11 NA 11.11 18.18 NA NA 11.76 14.71 11.11 NA NA 11.90 NA 0.00 NA 5.56 NA NA NA 7.41 NA NA NA NA NA NA NA NA NA NA 15.79 NA NA 8.33 0.00 NA NA NA NA NA NA 15.00 NA NA NA 9.09 NA NA 12.96 NA NA NA NA NA NA NA NA 8.00 N alternative_donor lig3 chr3R - chr3R_8226161_8226248 chr3R_8226161_8226239 chr3R_8224994_8226160;chr3R_8226249_8227041 0.00 0.00 0.00 6.25 0.00 0.00 0.00 9.38 4.26 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 41.67 0.00 7.69 0.00 13.16 9.76 0.00 0.00 NA 10.53 1.92 10.00 12.50 20.69 NA 0.00 4.35 4.35 8.33 0.00 0.00 7.69 0.00 20.00 0.00 NA 4.44 0.00 0.00 0.00 10.81 16.67 3.12 2.56 NA 0.00 NA 0.00 4.55 0.00 0.00 K jcn_only_AD RpS23,I_chr2R_10103243_10103455,I_chr2R_10103616_10103938 chr2R - chr2R_10103616_10104034 chr2R_10103616_10103938 chr2R_10103516_10103615;chr2R_10104035_10104038 0.15 0.08 0.05 0.02 0.09 0.07 0.05 0.04 0.06 0.15 0.08 0.06 0.07 0.14 0.06 0.12 0.05 0.06 0.06 0.05 0.09 1.14 0.67 0.18 0.19 0.08 0.29 0.14 0.83 1.14 1.14 0.69 0.43 0.04 2.24 3.13 0.06 0.34 0.15 0.27 1.29 0.04 0.05 0.45 0.34 1.49 0.27 1.27 0.17 0.26 0.63 0.17 0.53 3.84 0.09 0.63 0.12 0.61 K intron_retention tomosyn,I_chrX_12531219_12531470,I_chrX_12534873_12541731,noncoding_23357,I_chrX_12548772_12549203 chrX + chrX_12538801_12545142 chrX_12538800_12538801;chrX_12545142_12545143 chrX_12538791_12538800;chrX_12545143_12545259 8.52 NA NA 23.81 NA NA 22.22 0.00 12.50 NA NA 0.00 NA NA NA 33.33 0.00 NA 15.38 20.59 NA NA 4.35 NA NA NA 0.00 NA NA NA NA NA NA 8.70 NA NA 0.00 NA 0.00 NA NA 8.33 NA NA NA NA NA NA 20.00 NA 12.50 NA NA NA NA 0.00 NA NA K alternative_acceptor RI_chr3L_19787260_19787323,Ir76a,RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19795029_19795090;chr3L_19795029_19795077 chr3L_19795029_19795086 chr3L_19795020_19795028;chr3L_19795091_19795214 0.00 NA NA NA NA NA NA 12.50 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention Hsf,I_chr2R_14018415_14018474,RI_chr2R_14021578_14021911,RI_chr2R_14021614_14021911 chr2R - chr2R_14021601_14021911 chr2R_14021600_14021601;chr2R_14021911_14021912 chr2R_14021514_14021600;chr2R_14021912_14022011 30.00 27.78 28.00 10.81 33.33 29.17 32.43 23.40 39.02 NA NA 22.50 29.41 42.86 50.00 25.53 30.00 35.71 28.12 24.32 NA 38.46 32.00 35.00 23.08 20.00 33.33 NA NA 22.22 35.00 14.29 46.67 30.61 28.57 NA 46.67 14.29 31.25 35.00 NA 28.21 36.84 25.00 NA 40.00 NA 40.00 30.00 11.11 40.00 23.81 NA NA 25.93 46.15 23.08 43.75 K multi_cassette shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9785143,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9770053_9787870 chr2R_9770053_9771599;chr2R_9782098_9782343;chr2R_9782475_9786954;chr2R_9787177_9787870 chr2R_9771600_9782097;chr2R_9782344_9782474;chr2R_9786955_9787176 chr2R_9769906_9770052;chr2R_9787871_9787923 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.46 99.66 100.00 100.00 100.00 100.00 100.00 100.00 99.39 100.00 100.00 100.00 100.00 100.00 96.88 99.10 100.00 100.00 100.00 100.00 100.00 98.59 98.77 100.00 100.00 99.00 99.51 98.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention hts,I_chr2R_15286599_15294119,I_chr2R_15293594_15294119,RI_chr2R_15294446_15295345,I_chr2R_15294825_15295345,I_chr2R_15295410_15295479,I_chr2R_15311185_15312327,I_chr2R_15311303_15312026 chr2R - chr2R_15293594_15295345 chr2R_15293593_15293594;chr2R_15295345_15295346 chr2R_15293571_15293593;chr2R_15295346_15295409 2.83 6.90 0.00 4.55 14.29 3.23 33.33 7.69 4.71 16.67 NA 6.02 NA 18.52 0.00 23.33 11.76 0.00 9.52 7.50 0.00 3.12 3.28 0.00 3.23 10.53 2.63 NA NA 3.45 0.00 0.00 0.00 6.52 0.00 0.00 6.45 5.56 0.00 5.21 0.00 6.85 NA 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 6.90 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA SD23414,CG9132,I_chrX_16696492_16696589 chrX - chrX_16692699_16692782 chrX_16692718_16692782 chrX_16692783_16692991;chrX_16691549_16692698 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 79.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG31038,I_chr3R_25702915_25703648,I_chr3R_25705533_25722419,I_chr3R_25727788_25727905 chr3R + chr3R_25702989_25703648;chr3R_25702895_25703648;chr3R_25702897_25703648;chr3R_25702901_25703648;chr3R_25702838_25703648;chr3R_25702970_25703648 chr3R_25702915_25703648 chr3R_25703649_25703748;chr3R_25702831_25702837 13.64 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.64 NA NA NA NA 19.05 NA NA NA NA NA NA NA NA NA K alternative_acceptor betaggt-I,I_chr2L_4946222_4946668 chr2L + chr2L_4946222_4946906 chr2L_4946222_4946668 chr2L_4946122_4946221;chr2L_4946907_4947734 3.85 1.85 0.00 5.45 3.45 5.56 5.71 5.88 3.61 1.96 5.26 10.61 31.25 9.09 3.23 11.11 6.67 10.53 6.67 1.19 3.85 16.36 3.49 1.33 0.00 0.00 1.54 1.59 12.24 2.70 3.85 5.26 4.84 2.50 2.56 5.13 2.61 2.50 3.16 5.97 5.26 4.00 5.56 1.67 5.00 8.51 5.56 6.52 1.67 1.72 3.03 2.13 0.00 5.66 4.35 3.85 1.54 5.88 K intron_retention Sap47 chr3R + chr3R_11779957_11780304 chr3R_11779956_11779957;chr3R_11780304_11780305 chr3R_11779880_11779956;chr3R_11780305_11780405 43.30 64.29 27.78 13.33 NA NA 41.67 17.65 37.50 NA 36.36 50.00 NA NA 22.22 26.67 30.77 30.77 45.45 40.00 NA 52.63 47.06 58.33 33.33 45.45 45.45 NA 46.15 NA 35.71 NA 26.09 36.84 46.67 66.67 56.52 46.67 59.09 26.09 NA 33.33 NA 36.84 NA 52.63 45.45 27.27 44.44 43.75 42.86 NA 58.33 57.14 28.57 53.85 63.16 30.77 N alternative_acceptor Rip11,E_chrX_18532733_18533695,RI_chrX_18530353_18530870,RI_chrX_18530742_18530870,RI_chrX_18544139_18544185 chrX - chrX_18530338_18530646 chrX_18530353_18530646 chrX_18530647_18530741;chrX_18530253_18530337 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 89.13 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention lsn,Cby,CG31431 chr3R + chr3R_17691684_17691746 chr3R_17691683_17691684;chr3R_17691746_17691747 chr3R_17691537_17691683;chr3R_17691747_17691960 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 2.20 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 1.96 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 1.19 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 2.44 0.00 0.00 0.00 0.00 1.54 0.00 0.00 K alternative_acceptor Fur1,I_chr3R_21179328_21179393,I_chr3R_21179590_21179870,CEI_chr3R_21210600_21222433,I_chr3R_21257704_21287086 chr3R - chr3R_21177915_21179870;chr3R_21179590_21179870 chr3R_21177936_21179870 chr3R_21179871_21179970;chr3R_21177839_21177914 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Wwox,I_chr2L_8000434_8000497,Spn28D chr2L - chr2L_8000434_8003283 chr2L_8000433_8000434;chr2L_8003283_8003284 chr2L_8000366_8000433;chr2L_8003284_8003463 16.67 9.09 21.74 26.32 12.50 17.65 27.27 21.88 15.15 NA NA 21.05 NA 22.22 30.43 16.67 33.33 38.46 22.22 25.00 NA 7.14 9.09 9.09 16.00 9.09 25.00 NA 13.64 0.00 20.00 9.09 8.33 28.57 20.00 9.09 25.00 10.53 8.11 13.79 NA 21.88 25.00 22.73 7.41 16.00 16.67 8.70 25.00 21.05 14.81 21.43 6.06 10.71 30.00 0.00 6.67 0.00 K alternative_acceptor mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818607_7818970;chr3R_7818597_7818970 chr3R_7818575_7818970 chr3R_7818971_7818995;chr3R_7818507_7818574 56.56 58.16 59.00 66.67 56.70 61.19 36.89 62.64 54.85 52.08 50.60 53.29 56.45 56.86 52.73 59.85 56.56 64.13 64.46 56.73 46.75 72.66 56.25 54.39 52.78 64.08 38.75 50.00 51.22 54.90 56.18 65.85 71.25 57.05 70.00 40.00 55.84 45.59 65.91 58.74 56.00 60.00 50.54 54.67 68.85 53.75 53.70 67.27 54.77 50.00 51.11 56.72 58.62 58.33 57.41 52.63 60.71 72.34 K intron_retention RI_chrX_8608147_8608508,I_chrX_8608169_8608438,l(1)G0020 chrX - chrX_8610980_8611119 chrX_8610979_8610980;chrX_8611119_8611120 chrX_8610747_8610979;chrX_8611120_8612089 13.89 12.50 13.64 30.00 NA 13.33 25.00 15.38 16.67 7.14 NA 15.38 NA NA 9.52 22.73 NA 10.53 21.43 10.91 14.29 10.53 20.00 20.00 9.52 5.26 15.38 10.00 3.23 0.00 NA 9.68 0.00 20.00 17.65 15.15 13.79 12.00 11.76 9.52 4.35 13.16 NA 19.05 3.23 10.00 14.00 0.00 17.07 27.91 22.50 21.43 19.61 24.39 35.71 20.41 21.21 5.88 K alternative_donor Myo31DF,I_chr2L_10506249_10506683,I_chr2L_10506446_10506542 chr2L - chr2L_10506107_10506683 chr2L_10506107_10506542 chr2L_10505926_10506106;chr2L_10506684_10506780 16.50 16.67 19.35 20.56 8.62 13.68 36.26 16.67 14.21 18.89 20.59 11.76 31.25 13.19 13.64 19.26 18.87 11.24 17.44 11.82 20.00 10.49 13.66 16.81 26.98 17.57 21.43 11.35 31.82 13.04 10.45 21.31 18.82 16.79 24.73 28.95 11.11 13.10 14.89 11.56 27.85 15.52 17.11 8.71 15.94 19.63 13.70 18.92 15.76 21.33 22.63 15.89 12.20 12.07 14.68 15.71 15.71 16.50 K intron_retention tsr,I_chr2R_19932706_19933121 chr2R - chr2R_19932274_19932336 chr2R_19932273_19932274;chr2R_19932336_19932337 chr2R_19931920_19932273;chr2R_19932337_19932442 0.26 0.30 0.43 0.28 0.23 0.28 0.39 0.26 0.24 0.51 0.06 0.26 0.20 0.33 0.41 0.17 0.18 0.19 0.28 0.27 0.11 0.34 0.36 0.26 0.34 0.26 1.08 1.25 1.81 0.08 0.32 0.32 0.10 0.26 0.12 0.45 0.40 0.32 0.21 0.18 0.38 0.27 0.12 0.14 0.25 0.20 0.37 0.21 0.22 0.23 0.34 0.13 0.19 0.24 0.24 0.29 0.19 0.15 K intron_retention Dip-B chr3R + chr3R_9608564_9609538 chr3R_9608563_9608564;chr3R_9609538_9609539 chr3R_9608430_9608563;chr3R_9609539_9609815 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.46 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.97 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG9485,I_chr2R_17217595_17218598,I_chr2R_17228865_17228924 chr2R + chr2R_17200289_17201928;chr2R_17200246_17201928 chr2R_17200086_17201928 chr2R_17201929_17202269;chr2R_17200084_17200085 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_donor CG9674,I_chr3L_16785706_16785748,I_chr3L_16793055_16800660 chr3L - chr3L_16789438_16792144 chr3L_16789438_16791271 chr3L_16788351_16789437;chr3L_16792145_16792272 0.00 0.00 0.00 0.00 0.00 1.41 0.96 1.03 0.64 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 17.74 0.00 0.64 0.00 1.27 0.56 0.00 0.00 0.00 0.66 0.86 1.72 0.93 0.00 0.00 1.64 0.00 1.47 1.04 0.00 0.00 0.00 1.83 0.00 0.00 2.08 0.82 0.00 0.00 1.27 3.70 0.65 1.41 0.61 1.59 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG10527 chr2R - chr2R_16959306_16960229 chr2R_16959309_16960229 chr2R_16960230_16960298;chr2R_16958907_16959305 100.00 100.00 100.00 99.78 100.00 100.00 100.00 100.00 99.73 100.00 100.00 100.00 100.00 100.00 100.00 99.76 99.58 99.55 100.00 99.52 100.00 99.16 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.68 100.00 100.00 99.53 100.00 100.00 99.12 100.00 100.00 100.00 98.88 99.81 100.00 100.00 100.00 100.00 100.00 100.00 99.44 100.00 100.00 100.00 100.00 100.00 100.00 98.78 100.00 100.00 K intron_retention Csp,RI_chr3L_22262215_22262452,I_chr3L_22264863_22266536,I_chr3L_22273037_22275661 chr3L + chr3L_22264077_22264657 chr3L_22264076_22264077;chr3L_22264657_22264658 chr3L_22264014_22264076;chr3L_22264658_22264862 0.00 0.00 0.00 4.76 0.00 0.00 4.35 3.70 3.08 0.00 0.00 2.78 NA 0.00 0.00 4.35 0.00 0.00 0.00 4.29 8.33 3.39 1.27 0.00 0.00 NA 4.00 2.13 0.00 4.44 0.00 0.00 0.00 3.33 1.67 3.28 0.00 0.00 0.00 0.00 0.00 0.00 10.53 0.00 0.00 0.00 0.00 10.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 11.76 K jcn_only_AA rumi,I_chr3R_18576057_18576110 chr3R - chr3R_18576057_18576110 chr3R_18576061_18576110 chr3R_18576111_18576210;chr3R_18575957_18576056 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.35 100.00 100.00 100.00 99.36 98.72 98.65 100.00 99.10 100.00 96.92 100.00 99.51 100.00 100.00 99.27 100.00 98.61 100.00 100.00 100.00 98.32 100.00 100.00 100.00 99.18 100.00 100.00 99.01 99.15 98.96 99.07 97.76 98.91 100.00 100.00 99.20 100.00 100.00 100.00 100.00 99.47 98.17 98.52 98.75 98.31 100.00 100.00 100.00 100.00 98.99 K jcn_only_AD CG42568,RI_chr2R_20046540_20046671,RI_chr2R_20046609_20046675,RI_chr2R_20046743_20046821 chr2R - chr2R_20046609_20046667;chr2R_20046609_20046671 chr2R_20046609_20046675 chr2R_20046509_20046608;chr2R_20046676_20046742 3.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG4662 chr3R + chr3R_15676853_15677553 chr3R_15676853_15677063;chr3R_15677142_15677553 chr3R_15677064_15677141 chr3R_15676787_15676852;chr3R_15677554_15677640 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 5.56 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 2.27 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.63 K intron_retention CG5919 chr3R + chr3R_17096253_17096308 chr3R_17096252_17096253;chr3R_17096308_17096309 chr3R_17095805_17096252;chr3R_17096309_17096590 4.17 0.00 11.54 17.39 9.09 0.00 3.39 2.27 9.20 3.85 9.68 4.41 0.00 0.00 4.17 8.00 0.00 14.29 6.52 4.65 2.70 3.92 6.25 3.03 10.00 0.00 10.81 20.00 0.00 0.00 2.94 0.00 0.00 12.24 10.00 11.76 6.67 0.00 3.64 5.00 0.00 6.25 0.00 5.00 0.00 0.00 4.35 1.69 6.45 9.76 12.24 0.00 0.00 8.70 10.53 3.77 6.67 0.00 K intron_retention CG14899 chr3R - chr3R_12308929_12308984 chr3R_12308928_12308929;chr3R_12308984_12308985 chr3R_12308407_12308928;chr3R_12308985_12309505 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG3651,I_chr2L_22124217_22124661,I_chr2L_22124698_22124781 chr2L + chr2L_22124217_22124661;chr2L_22124217_22124781 chr2L_22124217_22124786 chr2L_22124117_22124216;chr2L_22124787_22124881 4.94 3.08 3.39 7.29 7.84 8.70 10.23 2.50 3.10 9.52 4.65 6.73 8.51 7.27 4.69 4.40 8.33 4.41 6.67 5.45 4.65 2.38 8.33 1.25 8.33 5.08 3.49 2.22 7.61 7.55 4.55 1.30 4.76 7.78 7.84 4.44 5.71 3.39 6.25 7.09 4.94 6.14 7.69 5.71 2.33 3.51 5.80 3.28 4.21 4.71 9.76 1.89 3.12 1.69 4.11 5.26 1.45 5.10 K alternative_donor Ten-a chrX + chrX_12097945_12098171;chrX_12098018_12098171;chrX_12098012_12098171;chrX_12098030_12098171 chrX_12097912_12098171 chrX_12098172_12098306;chrX_12097907_12097911 0.00 NA 50.00 NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 0.00 NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 25.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA K alternative_acceptor mei-P26 chrX + chrX_9060493_9060567 chrX_9060493_9060552 chrX_9059715_9060492;chrX_9060568_9061065 5.72 NA 6.67 3.85 NA 0.00 0.00 6.67 2.50 NA NA 3.70 7.69 6.25 0.00 7.41 6.67 0.00 6.25 7.69 0.00 NA 5.88 NA NA 5.56 0.00 NA NA NA 13.33 NA 4.76 6.67 NA NA NA NA NA 5.88 NA 5.00 14.29 NA NA NA NA 3.45 6.25 NA NA NA NA NA 5.56 NA NA NA K intron_retention Tina-1,I_chr2R_20828961_20829772,E_chr2R_20851190_20852094 chr2R - chr2R_20828965_20829772 chr2R_20828964_20828965;chr2R_20829772_20829773 chr2R_20828645_20828964;chr2R_20829773_20829872 1.44 1.13 2.33 6.07 4.21 0.82 4.72 2.20 1.44 0.00 1.83 1.92 1.27 3.39 1.74 4.02 0.00 2.11 3.20 1.92 0.60 5.13 1.25 1.93 5.32 0.79 2.82 3.45 1.83 2.17 3.20 1.19 1.42 2.36 1.22 3.77 0.00 0.00 1.29 0.78 1.34 1.70 0.65 1.24 0.67 1.32 1.88 1.16 1.89 0.00 2.17 0.00 0.00 1.41 2.51 1.14 1.44 0.24 K intron_retention eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341486_20342041 chr3L_20341485_20341486;chr3L_20342041_20342042 chr3L_20341482_20341485;chr3L_20342042_20342306 0.00 NA 0.00 4.55 0.00 0.00 12.50 0.00 5.41 NA 0.00 0.00 NA 13.33 3.33 11.76 4.35 0.00 0.00 5.71 0.00 NA NA 13.33 0.00 5.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 10.53 NA 6.45 NA 0.00 NA 0.00 NA NA 7.84 NA NA 0.00 NA NA 8.33 15.38 0.00 0.00 K cassette CG30020,I_chr2R_6778098_6778140 chr2R + chr2R_6775731_6775975 chr2R_6775731_6775787;chr2R_6775902_6775975 chr2R_6775788_6775901 chr2R_6775602_6775730;chr2R_6775976_6776326 90.91 95.45 90.00 74.47 75.00 80.95 72.22 91.84 92.98 81.25 73.91 97.22 100.00 86.96 88.89 84.44 92.00 90.48 96.55 85.71 88.89 93.18 80.56 96.15 100.00 64.29 74.29 78.95 77.78 88.24 90.00 92.86 88.46 88.64 100.00 55.00 96.30 84.62 95.83 97.22 86.67 92.86 94.74 96.43 90.91 94.12 100.00 96.00 92.86 95.00 96.30 94.74 87.50 84.62 95.83 93.33 100.00 81.25 K multi_cassette CG3114,RI_chrX_168562_168685 chrX - chrX_165647_167215 chrX_165647_165834;chrX_165909_166454;chrX_166917_167215 chrX_165835_165908;chrX_166455_166916 chrX_165521_165646;chrX_167216_167420 7.42 7.69 NA NA NA NA NA 0.00 12.50 NA NA 0.00 NA NA 7.14 11.11 NA NA NA 6.25 NA 7.69 9.09 11.11 NA NA NA NA NA 10.00 NA NA 12.50 6.67 NA 33.33 6.67 NA 0.00 6.25 NA 6.67 NA NA NA NA 11.11 NA 5.88 NA 10.00 NA NA NA NA NA NA 7.14 N jcn_only_AA Cct5 chr2R + chr2R_8064224_8064282 chr2R_8064224_8064264 chr2R_8063242_8064223;chr2R_8064283_8065030 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD HP4,I_chr3L_7968788_7968857 chr3L - chr3L_7968788_7968861 chr3L_7968788_7968857 chr3L_7968688_7968787;chr3L_7968862_7968957 0.31 0.78 0.90 0.56 0.00 0.65 1.18 0.00 0.75 0.00 0.58 0.00 0.53 0.00 0.46 0.00 0.68 0.00 0.50 0.16 0.43 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.44 0.31 0.00 0.46 0.41 0.93 0.30 0.22 0.53 0.00 0.65 0.00 0.57 0.20 1.02 0.29 0.65 0.29 0.42 0.65 0.00 0.34 0.00 0.00 0.31 0.78 K multi_cassette CG40006,I_chr2L_22568823_22611099,I_chr2L_22581342_22586124,I_chr2L_22581342_22603937,I_chr2L_22610651_22611099,RI_chr2L_22611708_22657683 chr2L - chr2L_22568823_22611099 chr2L_22568823_22580737;chr2L_22580856_22580912;chr2L_22581342_22611099 chr2L_22580738_22580855;chr2L_22580913_22581341 chr2L_22568723_22568822;chr2L_22611100_22611167 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 NA 100.00 NA NA NA 66.67 NA NA 100.00 K cassette CG1681,I_chrX_13299118_13302688,I_chrX_13300335_13302320 chrX + chrX_13299118_13302688 chrX_13299118_13302320;chrX_13302608_13302688 chrX_13302321_13302607 chrX_13299018_13299117;chrX_13302689_13302788 99.03 99.02 99.35 96.22 100.00 99.32 97.50 98.27 98.22 97.10 98.39 100.00 99.13 98.15 98.11 97.93 98.18 99.03 100.00 98.73 98.70 95.10 98.66 99.67 99.03 99.22 98.12 98.50 99.07 99.44 99.38 99.26 99.44 98.48 99.32 99.47 99.69 98.90 98.78 99.58 99.30 98.95 100.00 98.52 99.16 99.57 99.28 99.07 98.70 99.07 98.46 97.42 98.63 98.62 97.84 99.50 99.26 100.00 K intron_retention I_chrX_19372068_19372125,mRpS14 chrX - chrX_19373787_19373846 chrX_19373786_19373787;chrX_19373846_19373847 chrX_19373365_19373786;chrX_19373847_19373953 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 6.25 1.18 2.15 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 2.22 0.00 1.47 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2608320_2608437 chr3L_2608319_2608320;chr3L_2608437_2608438 chr3L_2608141_2608319;chr3L_2608438_2608644 0.45 0.56 0.47 0.19 0.31 0.59 0.71 0.93 0.45 0.00 0.37 0.78 0.26 0.27 0.92 0.40 0.15 0.65 1.07 0.35 0.61 0.89 0.45 0.16 0.45 0.47 0.64 1.35 0.37 0.42 0.62 0.49 0.70 0.45 0.00 0.81 0.57 0.36 0.30 0.33 0.35 0.44 0.92 0.00 0.18 0.72 0.00 1.20 0.39 0.00 0.58 1.20 0.23 0.40 0.40 0.20 0.48 0.57 N cassette CG32032 chr3L + chr3L_9086412_9086892 chr3L_9086412_9086719;chr3L_9086831_9086892 chr3L_9086720_9086830 chr3L_9086163_9086411;chr3L_9086893_9087041 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.17 100.00 100.00 100.00 100.00 100.00 100.00 80.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Rad23,I_chr4_328801_328879,RI_chr4_328916_330164 chr4 + chr4_328916_329056 chr4_328915_328916;chr4_329056_329057 chr4_328880_328915;chr4_329057_329200 2.41 0.00 0.00 2.38 0.00 0.00 4.29 3.57 3.64 NA 7.41 0.00 0.00 2.70 0.00 3.26 0.00 5.41 4.65 3.66 6.67 0.00 4.35 5.71 4.55 10.71 13.95 3.85 10.53 0.00 0.00 0.00 0.00 1.61 0.00 3.57 0.00 8.33 0.00 5.56 0.00 3.12 0.00 5.56 7.41 0.00 0.00 0.00 4.60 0.00 2.08 3.45 7.69 0.00 0.00 4.35 0.00 2.44 K alternative_donor CREFI_chr3R_10712253_10713568,CG33332,CG33331,E_chr3R_10717341_10717506 chr3R + chr3R_10712234_10713568 chr3R_10712253_10713568 chr3R_10713569_10713668;chr3R_10712211_10712233 100.00 NA NA 88.89 NA NA 100.00 90.91 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 90.00 NA NA NA NA NA 100.00 NA 90.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA 100.00 K intron_retention mRpS31 chr3L + chr3L_15998428_15998491 chr3L_15998427_15998428;chr3L_15998491_15998492 chr3L_15998215_15998427;chr3L_15998492_15998947 0.00 12.50 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 4.35 NA 0.00 0.00 1.96 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 0.00 NA 2.78 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_715964_716581 chr4_715964_716322 chr4_715936_715963;chr4_716582_716582 100.00 100.00 100.00 96.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 98.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA NA NA 100.00 NA NA 100.00 100.00 NA NA NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA NA K alternative_donor I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545799_17545855;chr2R_17545781_17545855;chr2R_17545615_17545855 chr2R_17545686_17545855 chr2R_17545856_17545985;chr2R_17545613_17545614 0.00 10.00 0.00 0.00 6.67 4.76 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 14.29 0.00 20.00 7.69 0.00 50.00 0.00 0.00 7.14 12.50 22.22 4.35 NA NA 12.50 16.67 0.00 7.69 12.50 0.00 14.29 0.00 4.76 9.09 0.00 18.18 4.17 0.00 33.33 0.00 0.00 0.00 8.33 10.00 0.00 0.00 K alternative_donor sdk,I_chrX_581050_581605,I_chrX_581108_581660,I_chrX_625220_634459,I_chrX_636395_636562 chrX + chrX_581160_581605;chrX_581043_581605;chrX_581108_581605 chrX_580974_581605 chrX_581606_581705;chrX_580950_580973 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 9.09 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K alternative_donor CG4829,I_chrX_16717240_16717547 chrX + chrX_16711038_16716589 chrX_16711168_16716589 chrX_16716590_16716805;chrX_16710951_16711037 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 98.48 100.00 95.83 100.00 98.08 100.00 100.00 100.00 100.00 92.31 100.00 100.00 NA 83.33 100.00 100.00 100.00 90.91 100.00 95.00 100.00 100.00 100.00 100.00 90.91 100.00 98.39 97.96 93.75 90.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 K jcn_only_AD CG31713,CREI_chr2L_9938511_9938564,RI_chr2L_9942818_9944294,I_chr2L_9944682_9947179 chr2L - chr2L_9938511_9938568 chr2L_9938511_9938564 chr2L_9938411_9938510;chr2L_9938569_9938664 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 2.86 0.00 2.22 0.00 0.00 NA NA NA NA 3.70 1.79 2.50 1.75 0.00 4.17 4.44 2.17 0.00 0.00 2.78 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 2.17 K jcn_only_AD PPP4R2r chrX + chrX_10374058_10374116 chrX_10374062_10374116 chrX_10374117_10375969;chrX_10373869_10374057 2.15 0.00 1.75 0.00 0.00 0.00 5.41 0.00 3.40 0.00 0.00 0.78 0.00 1.52 5.33 2.15 1.72 1.72 1.64 1.96 0.00 3.03 5.15 5.32 4.26 1.64 3.23 0.00 6.67 2.56 10.42 NA 0.00 4.17 4.00 4.17 3.12 2.27 2.78 1.32 5.13 2.63 5.66 1.35 0.00 1.69 1.72 NA 2.70 1.39 2.41 1.89 3.23 3.45 2.38 0.00 5.56 3.70 K alternative_last_exon dom,I_chr2R_17217595_17218598,I_chr2R_17228865_17228924 chr2R + chr2R_17213153_17214923 chr2R_17213153_17213694 chr2R_17214924_17215724 chr2R_17213695_17213975 chr2R_17212897_17213152 0.00 0.00 0.00 0.88 0.00 1.28 1.09 0.00 0.56 1.35 0.00 1.24 1.39 1.35 0.00 1.05 0.00 1.35 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 1.64 1.15 1.18 0.00 0.00 0.00 1.39 0.00 0.70 1.27 0.98 0.00 3.33 0.55 0.00 0.00 0.00 2.70 0.00 0.00 0.00 3.23 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention bel,I_chr3R_4484110_4485922 chr3R - chr3R_4481629_4481699 chr3R_4481628_4481629;chr3R_4481699_4481700 chr3R_4480932_4481628;chr3R_4481700_4483565 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.22 4.17 0.00 0.00 0.00 20.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 0.00 3.75 0.00 2.27 3.28 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 2.38 0.00 K jcn_only_AD CG17883,I_chr2R_560147_560511,I_chr2R_560547_560618 chr2R + chr2R_560568_560618;chr2R_560547_560618;chr2R_560565_560618 chr2R_560147_560618 chr2R_560619_560642;chr2R_560047_560146 14.29 13.33 15.62 NA 12.00 14.29 2.17 4.55 17.86 NA 17.86 17.65 7.14 3.70 20.00 7.69 17.78 15.38 18.42 5.88 15.00 5.56 18.75 14.29 18.18 NA 45.00 14.29 NA 10.00 30.77 5.00 8.70 17.57 16.67 NA NA NA 20.00 4.88 NA 16.00 16.67 18.18 4.76 7.50 12.50 NA 17.39 34.62 11.54 24.00 6.45 13.33 20.59 10.26 10.20 10.64 K jcn_only_AD pAbp,I_chr2R_14027838_14028996 chr2R + chr2R_14028464_14028996;chr2R_14028460_14028996 chr2R_14028922_14028996 chr2R_14028997_14029096;chr2R_14028264_14028459 32.91 NA NA 25.71 NA NA NA 19.51 30.00 NA NA 38.10 NA NA NA 26.92 NA NA NA 20.83 NA 47.06 40.00 NA NA NA 31.03 43.33 42.31 NA NA NA 7.41 34.78 NA NA 64.71 NA NA 20.51 NA 36.36 NA 17.24 NA NA NA NA NA NA NA NA NA NA NA NA 71.43 NA K intron_retention CG6845,I_chr3L_148414_148465,I_chr3L_148414_148475,I_chr3L_148414_148489 chr3L + chr3L_148414_148475 chr3L_148413_148414;chr3L_148475_148476 chr3L_148350_148413;chr3L_148476_148555 91.67 88.89 88.89 84.21 NA 66.67 90.91 95.00 82.61 NA NA 100.00 NA NA 92.31 93.75 NA NA 100.00 92.31 NA NA NA 90.91 NA NA 100.00 NA NA NA 91.67 NA NA 94.44 NA NA NA NA NA 81.82 NA 93.33 88.89 NA NA NA NA NA 86.36 NA NA 77.78 NA NA NA 100.00 100.00 NA K alternative_last_exon CG33129,I_chr2L_10966410_10967142,noncoding_2515,I_chr2L_10966622_10967108 chr2L - chr2L_10966410_10967142 chr2L_10966622_10967142 chr2L_10965993_10966409 chr2L_10966502_10966621 chr2L_10967143_10967179 66.07 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA 57.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CaMKI,I_chr4_466377_467256,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_466912_467256;chr4_466816_467256;chr4_467113_467256;chr4_466858_467256;chr4_466896_467256 chr4_466798_467256 chr4_467257_467272;chr4_466792_466797 33.33 0.00 16.67 30.00 NA 50.00 30.77 40.00 21.43 NA NA 62.50 33.33 50.00 33.33 33.33 16.67 33.33 0.00 20.00 NA NA 33.33 NA 50.00 NA NA NA NA NA 40.00 NA NA 16.67 NA NA NA NA NA NA NA 50.00 16.67 NA NA NA NA NA 18.18 NA NA 20.00 NA NA 33.33 NA NA NA K alternative_donor CG42507,Trl,EI_chr3L_14750431_14750893,I_chr3L_14750431_14750985,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14750431_14750941;chr3L_14750431_14750762;chr3L_14750431_14751007;chr3L_14750431_14750583 chr3L_14750431_14750893 chr3L_14750331_14750430;chr3L_14751008_14751008 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 5.88 2.27 0.00 0.00 0.00 2.44 5.26 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.51 4.26 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 2.44 K jcn_only_AD CG31431 chr3R + chr3R_17696730_17697703;chr3R_17696581_17697703;chr3R_17696702_17697703 chr3R_17696656_17697703 chr3R_17697704_17697862;chr3R_17696406_17696580 5.68 4.08 8.60 4.81 6.06 4.70 10.07 2.53 8.96 0.00 4.38 6.60 1.44 6.28 6.57 4.26 6.25 6.35 5.82 3.47 0.81 6.35 6.67 7.35 5.45 6.45 4.52 2.53 23.21 9.09 2.82 8.22 3.97 4.26 5.68 3.57 3.33 5.33 6.34 6.29 5.10 6.89 6.96 3.18 3.66 6.29 2.88 7.41 5.00 8.00 6.59 6.43 3.70 1.49 5.67 2.75 6.67 9.76 K alternative_acceptor NUCB1,RI_chr3L_17794900_17794991 chr3L - chr3L_17792653_17794991 chr3L_17794900_17794991 chr3L_17794992_17795091;chr3L_17791160_17792652 0.00 0.00 0.00 1.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Dsor1,chrX_9141950_9142262.0,chrX_9142356_9142574.0 chrX + chrX_9141687_9142574 chrX_9141942_9142574 chrX_9142575_9143214;chrX_9141618_9141686 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention RI_chr2R_3817895_3817951,rnh1,RI_chr2R_3819348_3819403 chr2R - chr2R_3818730_3818789 chr2R_3818729_3818730;chr2R_3818789_3818790 chr2R_3818359_3818729;chr2R_3818790_3819060 5.26 13.33 5.71 6.06 0.00 9.38 8.93 9.86 8.57 0.00 0.00 12.96 2.70 0.00 2.94 4.17 4.76 0.00 4.55 7.69 0.00 NA 20.00 5.88 25.00 19.44 2.44 3.23 18.75 0.00 5.26 3.45 9.52 7.35 3.45 0.00 0.00 0.00 7.69 4.00 27.50 6.06 15.38 2.63 0.00 6.78 5.88 2.50 5.26 5.77 8.33 3.45 5.45 8.11 4.88 4.35 6.10 2.90 K intron_retention didum,I_chr2R_3393005_3393348 chr2R + chr2R_3394095_3394159 chr2R_3394094_3394095;chr2R_3394159_3394160 chr2R_3393582_3394094;chr2R_3394160_3394291 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ras chrX + chrX_10640260_10640453 chrX_10640259_10640260;chrX_10640453_10640454 chrX_10640109_10640259;chrX_10640454_10641105 3.39 3.39 5.88 2.94 4.11 0.00 3.49 3.70 4.44 4.44 0.00 2.99 0.00 2.17 2.35 2.56 0.00 0.00 4.55 3.74 6.45 24.07 3.32 6.01 1.92 4.26 3.31 3.36 2.73 1.65 7.14 7.84 5.10 2.94 4.44 3.70 2.56 2.82 3.52 6.76 3.23 4.69 2.13 2.97 6.38 2.00 4.96 7.35 3.60 2.68 3.21 5.62 3.40 2.11 2.60 3.42 2.48 4.20 K alternative_acceptor Nedd4,I_chr3L_17532828_17532882,I_chr3L_17532828_17533787,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17532828_17533787;chr3L_17532828_17533790 chr3L_17532828_17532882 chr3L_17532728_17532827;chr3L_17533791_17533887 17.39 18.75 12.50 75.76 7.14 8.33 29.69 23.81 15.00 13.33 57.14 11.36 25.00 25.00 10.34 23.53 20.00 26.67 17.65 18.92 37.50 54.17 10.71 16.67 25.00 11.54 13.04 15.38 10.71 27.78 21.05 7.69 18.18 18.75 14.29 9.09 13.33 8.00 12.00 15.56 30.00 22.58 22.22 20.00 20.00 21.43 16.67 25.00 17.65 16.67 17.39 12.00 7.14 10.00 16.67 9.09 14.29 27.27 K alternative_donor R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083522_8089184;chr2L_8083588_8089184;chr2L_8083637_8089184;chr2L_8083687_8089184 chr2L_8083458_8089184 chr2L_8089185_8089284;chr2L_8083444_8083457 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 12.50 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 3.03 0.00 0.00 8.33 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 K alternative_acceptor CG4165,I_chrX_5317784_5317881,I_chrX_5321743_5321838 chrX + chrX_5317784_5317881 chrX_5317784_5317847 chrX_5317684_5317783;chrX_5317882_5317981 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 92.31 100.00 92.86 100.00 93.75 100.00 100.00 94.44 100.00 91.67 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 92.86 100.00 100.00 100.00 K intron_retention Cas chr2L - chr2L_16821602_16821663 chr2L_16821601_16821602;chr2L_16821663_16821664 chr2L_16821150_16821601;chr2L_16821664_16822061 100.00 100.00 100.00 100.00 100.00 99.07 99.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.32 100.00 100.00 100.00 100.00 100.00 99.25 99.22 99.19 100.00 100.00 100.00 99.45 100.00 100.00 99.02 100.00 99.12 99.53 99.42 100.00 100.00 100.00 100.00 99.45 99.17 99.47 99.49 99.26 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.29 K intron_retention CG5514,RI_chr3R_23768206_23768306,Gp93 chr3R + chr3R_23768206_23768309 chr3R_23768205_23768206;chr3R_23768309_23768310 chr3R_23768160_23768205;chr3R_23768310_23768406 93.54 NA NA 100.00 90.00 NA NA 100.00 91.67 NA NA 92.86 NA 100.00 88.89 NA NA NA NA 78.57 NA 100.00 NA 100.00 NA 100.00 90.91 93.33 91.67 100.00 100.00 93.75 91.67 93.75 92.31 100.00 100.00 NA 91.67 94.44 90.91 91.67 NA 72.73 86.96 93.75 90.00 100.00 94.12 100.00 91.67 NA NA 100.00 90.91 88.89 100.00 NA K intron_retention RI_chr3L_19787260_19787323,Ir76a,RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19795029_19795090 chr3L_19795028_19795029;chr3L_19795090_19795091 chr3L_19795020_19795028;chr3L_19795091_19795214 5.88 NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA 14.29 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 5.88 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG5514,RI_chr3R_23768206_23768306,Gp93 chr3R + chr3R_23767856_23768306;chr3R_23767856_23768156 chr3R_23767856_23768309 chr3R_23765429_23767855;chr3R_23768310_23768406 71.43 80.00 81.82 74.47 68.97 75.00 84.62 74.24 78.89 70.83 81.25 69.86 75.00 71.43 69.05 77.50 68.00 78.57 83.33 78.02 75.00 48.28 77.36 70.69 75.00 66.67 75.00 48.57 69.39 75.00 68.75 62.71 71.01 70.97 65.96 54.76 70.69 71.88 71.43 71.11 72.06 77.50 70.97 71.05 66.67 70.37 83.13 66.67 68.57 77.32 74.29 53.33 87.10 70.37 74.00 68.42 80.65 77.27 K jcn_only_AA SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_16982134_16983336;chr3R_16982134_16982890;chr3R_16982134_16983164;chr3R_16982134_16983159 chr3R_16982134_16983218 chr3R_16982126_16982133;chr3R_16983337_16983376 20.00 NA 38.71 25.71 NA NA 14.71 19.23 20.00 NA NA 18.18 18.18 18.18 22.73 29.73 NA 33.33 16.67 21.43 NA NA NA NA NA NA NA NA NA NA 12.90 NA NA 18.37 NA NA NA NA NA NA NA 20.75 NA NA NA NA NA NA 27.27 NA NA NA NA NA 23.91 NA NA 10.00 K intron_retention mRpL40 chr3R + chr3R_7233739_7233802 chr3R_7233738_7233739;chr3R_7233802_7233803 chr3R_7233570_7233738;chr3R_7233803_7234048 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA 4.76 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention cenB1A chr3R + chr3R_18944564_18945988 chr3R_18944563_18944564;chr3R_18945988_18945989 chr3R_18944160_18944563;chr3R_18945989_18946105 5.26 NA 0.00 3.03 10.53 6.25 7.69 4.65 0.00 13.33 5.26 19.51 0.00 6.25 0.00 6.67 NA 11.76 0.00 7.41 0.00 12.00 4.44 0.00 0.00 5.56 0.00 NA 25.00 11.76 0.00 NA 14.29 7.14 0.00 8.33 3.85 NA 0.00 13.04 NA 2.13 NA NA 14.29 14.29 0.00 10.53 5.26 0.00 0.00 0.00 NA NA 8.33 NA 8.70 NA K alternative_acceptor RanBPM chr2R + chr2R_6317289_6318384 chr2R_6317289_6318038 chr2R_6317228_6317288;chr2R_6318385_6319420 17.86 18.18 13.95 13.48 5.13 7.50 7.32 11.11 9.78 36.36 11.43 22.50 5.00 11.76 9.09 19.15 5.00 10.26 2.38 15.48 6.67 47.83 24.39 31.03 10.71 8.11 27.78 11.76 51.43 33.33 8.16 28.57 44.83 12.50 41.18 50.00 17.86 17.65 25.64 44.44 43.75 9.26 9.09 34.62 18.92 28.57 33.33 36.17 8.97 19.23 24.24 9.68 18.52 36.36 12.73 16.00 29.41 43.33 K jcn_only_AD ORMDL chr3L + chr3L_21628870_21629086 chr3L_21628905_21629086 chr3L_21629087_21629299;chr3L_21628718_21628869 10.29 8.33 10.67 18.52 10.99 3.61 8.57 12.90 5.62 13.95 10.29 11.03 5.68 9.23 14.29 14.43 12.35 2.90 9.09 13.22 7.25 12.12 13.64 9.09 0.00 12.79 17.65 16.22 31.51 6.52 9.52 17.91 0.00 9.73 8.70 21.57 14.29 5.77 7.87 5.51 19.57 10.34 6.58 5.17 7.29 7.37 4.55 15.79 7.30 9.33 9.33 25.00 21.54 15.25 7.69 13.16 10.62 12.71 K intron_retention CG5384 chr2L - chr2L_10314006_10314063 chr2L_10314005_10314006;chr2L_10314063_10314064 chr2L_10313901_10314005;chr2L_10314064_10314239 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.05 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor hook,CG31800 chr2L - chr2L_19031242_19031326 chr2L_19031242_19031292 chr2L_19031164_19031241;chr2L_19031327_19031361 98.68 100.00 100.00 100.00 100.00 100.00 98.39 98.31 100.00 100.00 97.73 98.55 100.00 100.00 100.00 100.00 96.88 97.62 97.96 98.17 100.00 100.00 97.56 97.22 93.75 97.56 98.18 100.00 100.00 100.00 97.92 96.88 97.73 100.00 100.00 100.00 97.44 100.00 98.21 98.21 95.74 98.68 97.22 100.00 97.87 100.00 100.00 97.06 100.00 100.00 97.67 96.55 96.15 100.00 96.15 98.15 100.00 100.00 K jcn_only_AD Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21124522_21125316 chr2L_21124615_21125316 chr2L_21125317_21125329;chr2L_21124443_21124521 2.56 6.45 0.00 8.33 0.00 NA 8.70 6.25 1.79 NA NA 0.00 7.14 3.23 0.00 3.85 NA NA 5.00 2.00 NA 3.23 0.00 4.17 0.00 2.86 0.00 0.00 0.00 0.00 0.00 NA 4.76 3.33 NA 2.86 0.00 2.78 2.63 0.00 NA 5.77 NA 0.00 NA NA 0.00 3.23 0.00 NA 2.50 NA NA NA 8.33 NA NA NA K cassette rl,RI_chr2RHet_203476_203577,RI_chr2RHet_203592_207044,R_chr2RHet_207162_232568,I_chr2RHet_232696_247338,RI_chr2RHet_240197_247338 chr2RHet + chr2RHet_207156_239911 chr2RHet_207156_232560;chr2RHet_232696_239911 chr2RHet_232561_232695 chr2RHet_207062_207155;chr2RHet_239912_239917 100.00 100.00 100.00 99.21 100.00 97.92 99.26 99.37 99.40 100.00 95.24 98.57 100.00 100.00 98.41 99.19 98.28 98.25 100.00 99.28 100.00 97.78 100.00 100.00 97.62 98.31 98.63 100.00 92.00 100.00 100.00 100.00 97.14 99.26 97.62 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 98.77 94.12 100.00 100.00 100.00 99.21 100.00 98.44 100.00 100.00 100.00 100.00 100.00 100.00 98.39 N jcn_only_AA None chrU + chrU_1179335_1184082;chrU_1179335_1183262 chrU_1179335_1184352 0.00 0.00 0.00 16.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL4,I_chr3R_23749027_23749091,E_chr3R_23749119_23750098,snoRNA:Or-aca3,CG5508,E_chr3R_23755071_23758533 chr3R + chr3R_23749463_23749861 chr3R_23749462_23749463;chr3R_23749861_23749862 chr3R_23749092_23749462;chr3R_23749862_23750674 0.00 0.00 0.00 0.01 0.02 0.00 0.01 0.03 0.02 0.00 0.02 0.01 0.02 0.04 0.00 0.02 0.02 0.00 0.02 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.20 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.03 0.01 0.00 0.00 0.02 0.00 0.01 0.00 0.00 0.00 0.02 0.00 0.00 0.05 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.01 0.00 K cassette rap,I_chrX_4570139_4570286 chrX - chrX_4568653_4573297 chrX_4568653_4570286;chrX_4570606_4573297 chrX_4570287_4570605 chrX_4568400_4568652;chrX_4573298_4573592 95.00 92.86 92.86 93.75 90.91 100.00 93.33 95.45 92.50 100.00 88.89 100.00 91.67 90.91 100.00 95.83 92.86 92.86 100.00 100.00 90.91 94.74 95.00 100.00 88.89 100.00 100.00 77.78 88.89 100.00 100.00 100.00 100.00 94.44 100.00 92.31 100.00 100.00 94.74 96.67 100.00 100.00 100.00 100.00 90.91 92.86 92.31 95.00 96.15 100.00 94.44 90.91 87.50 100.00 93.33 100.00 100.00 94.44 K intron_retention mam,RI_chr2R_9879614_9897667,I_chr2R_9898687_9913084 chr2R + chr2R_9897038_9897667 chr2R_9897037_9897038;chr2R_9897667_9897668 chr2R_9896785_9897037;chr2R_9897668_9897767 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 6.67 NA NA NA 0.00 NA NA 5.56 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA 5.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention Ahcy13 chrX + chrX_15344449_15345427 chrX_15344448_15344449;chrX_15345427_15345428 chrX_15344260_15344448;chrX_15345428_15346683 0.00 NA NA 0.00 NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 14.29 NA NA NA 20.00 NA 0.00 NA 0.00 NA NA NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention lark,noncoding_11093,REI_chr3L_7332718_7333975,RI_chr3L_7334219_7334452 chr3L + chr3L_7332718_7332967 chr3L_7332717_7332718;chr3L_7332967_7332968 chr3L_7332618_7332717;chr3L_7332968_7333008 30.09 NA 36.36 NA NA 33.33 NA 43.75 52.38 NA NA 42.11 NA 26.67 NA 28.57 NA NA 50.00 31.03 NA 7.69 25.00 40.00 NA NA 63.64 NA 14.29 NA 46.15 NA 16.67 25.00 NA NA NA NA NA 19.35 18.18 40.00 45.45 NA 13.64 26.09 30.77 10.81 50.00 NA 29.41 NA NA 12.50 NA 42.86 NA 26.09 K intron_retention scro chr3LHet + chr3LHet_231827_240692 chr3LHet_231826_231827;chr3LHet_240692_240693 chr3LHet_231816_231826;chr3LHet_240693_240954 6.35 NA 13.33 0.00 NA NA NA 0.00 7.14 NA NA NA NA 14.29 NA 13.33 NA NA 0.00 15.38 NA NA NA NA NA NA NA NA NA NA NA NA NA 5.56 NA NA NA NA NA NA NA 0.00 NA NA 14.29 NA NA NA 0.00 NA NA NA NA NA 5.56 NA NA 10.00 K intron_retention CG13604,I_chr3R_19816750_19817495,I_chr3R_19825840_19825904 chr3R - chr3R_19817598_19817768 chr3R_19817597_19817598;chr3R_19817768_19817769 chr3R_19817496_19817597;chr3R_19817769_19817831 96.30 100.00 92.86 92.86 100.00 NA 100.00 100.00 96.15 NA 100.00 94.44 91.67 NA 92.86 100.00 100.00 100.00 100.00 96.30 88.89 90.91 100.00 100.00 100.00 92.86 100.00 88.89 100.00 94.12 97.56 100.00 90.00 95.65 100.00 85.71 94.12 90.00 93.33 96.77 100.00 95.83 100.00 96.30 100.00 93.33 91.67 93.33 100.00 88.89 100.00 100.00 NA NA 100.00 91.67 NA 91.67 K alternative_donor CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3018025_3018081;chr2L_3018025_3018274;chr2L_3018025_3018163;chr2L_3018025_3018085 chr2L_3018025_3018278 chr2L_3017982_3018024;chr2L_3018279_3018287 0.00 33.33 NA 0.00 NA NA 8.33 0.00 4.76 NA NA 9.09 NA 0.00 0.00 0.00 25.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 25.00 NA 6.67 NA NA NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 7.14 NA NA NA NA NA 0.00 NA NA 12.50 K jcn_only_AA CG14619,RI_chrX_21860097_21868647,I_chrX_21865109_21865522,I_chrX_21869837_21869915 chrX + chrX_21865109_21868000 chrX_21865109_21865374 chrX_21865070_21865108 75.00 NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 82.14 NA NA 44.44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor vir-1,I_chr2L_12404131_12404435,RI_chr2L_12404178_12404435,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,I_chr2L_12421830_12423260 chr2L - chr2L_12404120_12404435 chr2L_12404178_12404435 chr2L_12404436_12404479;chr2L_12404078_12404119 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 K intron_retention Arp66B chr3L - chr3L_8108889_8108956 chr3L_8108888_8108889;chr3L_8108956_8108957 chr3L_8108782_8108888;chr3L_8108957_8109052 98.93 100.00 100.00 98.25 95.71 98.67 100.00 100.00 97.28 98.53 98.72 96.67 100.00 98.82 96.61 99.46 98.55 98.96 99.01 98.53 100.00 99.25 99.25 98.84 100.00 100.00 98.46 98.28 100.00 100.00 99.25 97.41 98.93 100.00 100.00 98.91 99.15 100.00 98.92 94.40 98.84 98.41 98.65 100.00 99.16 97.71 100.00 97.65 98.14 100.00 100.00 100.00 100.00 100.00 96.75 98.90 98.72 97.91 K intron_retention CREF_chr3R_5589662_5589762,CG8500,CG8507 chr3R + chr3R_5617514_5617567 chr3R_5617513_5617514;chr3R_5617567_5617568 chr3R_5617352_5617513;chr3R_5617568_5617783 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.36 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG2064 chr2R + chr2R_3554136_3554191 chr2R_3554135_3554136;chr2R_3554191_3554192 chr2R_3554067_3554135;chr2R_3554192_3554271 0.38 0.00 1.43 0.87 0.88 0.00 0.82 0.00 0.72 0.00 0.00 0.85 0.00 0.00 0.00 0.38 0.00 0.00 0.46 0.00 0.98 2.02 0.81 0.28 0.73 0.00 0.86 1.08 1.39 0.00 0.95 0.00 0.00 0.28 0.00 1.17 0.18 0.00 0.85 0.52 0.54 0.21 0.00 0.61 0.52 0.27 0.00 0.44 0.24 0.46 1.12 1.28 0.00 0.75 0.00 0.53 0.55 0.00 K intron_retention Abl,I_chr3L_16622304_16639909,RI_chr3L_16652567_16654512 chr3L - chr3L_16622307_16624476 chr3L_16622306_16622307;chr3L_16624476_16624477 chr3L_16621763_16622306;chr3L_16624477_16624530 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 NA NA 2.22 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA 5.88 0.00 NA 0.00 NA NA NA 0.00 NA NA 15.38 K intron_retention CG13865,RI_chrX_22415518_22416288 chrX + chrX_22415945_22416288 chrX_22415944_22415945;chrX_22416288_22416289 chrX_22415655_22415944;chrX_22416289_22416388 5.13 5.13 7.55 11.48 0.00 2.94 5.36 4.29 3.70 4.17 14.81 6.25 10.71 0.00 5.45 3.39 9.09 0.00 11.36 6.06 0.00 3.23 7.50 0.00 12.50 10.20 11.63 0.00 6.52 4.44 5.26 5.77 4.92 5.56 6.67 5.26 0.00 3.12 4.00 5.06 3.77 5.26 5.71 0.00 4.76 5.56 8.33 2.63 1.96 4.88 2.56 7.41 2.27 5.71 3.85 7.69 6.82 2.00 K intron_retention CG4829,I_chrX_16717240_16717547 chrX + chrX_16711168_16716589 chrX_16711167_16711168;chrX_16716589_16716590 chrX_16711045_16711167;chrX_16716590_16716805 3.40 2.27 10.71 5.13 4.76 6.98 9.43 2.56 6.06 NA 2.86 2.70 0.00 0.00 0.00 4.00 0.00 5.26 5.88 5.06 3.23 0.00 0.00 7.14 0.00 5.26 15.00 NA NA 9.09 0.00 0.00 5.26 3.03 0.00 NA 4.17 NA NA 22.22 0.00 6.49 4.69 0.00 NA 0.00 NA 4.76 6.52 NA 6.82 5.56 0.00 0.00 2.08 3.57 0.00 0.00 K alternative_acceptor Sap-r,E_chr3R_26711286_26714646,I_chr3R_26712266_26712343,I_chr3R_26712627_26714606,RI_chr3R_26713323_26714382 chr3R - chr3R_26712266_26712343 chr3R_26712270_26712343 chr3R_26712344_26712443;chr3R_26712166_26712265 99.77 99.37 99.76 99.85 99.86 99.58 99.55 99.93 99.94 99.74 99.85 99.93 99.85 99.84 99.88 99.62 99.69 99.86 99.87 99.71 99.85 99.74 99.89 99.88 99.80 99.45 99.70 99.69 99.87 99.85 97.88 99.70 99.75 99.91 99.47 99.67 99.77 99.45 100.00 99.58 100.00 99.74 99.81 99.49 99.63 100.00 99.77 99.50 99.69 99.79 99.44 100.00 100.00 100.00 100.00 98.31 100.00 99.70 K intron_retention Pvr,I_chr2L_8226604_8228082,I_chr2L_8229001_8230124,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8226607_8227651 chr2L_8226606_8226607;chr2L_8227651_8227652 chr2L_8226458_8226606;chr2L_8227652_8227658 64.85 52.00 54.76 82.93 65.00 64.71 56.41 71.43 71.05 60.00 100.00 64.10 67.44 75.00 69.23 84.21 79.17 65.00 77.50 73.08 75.00 35.71 54.05 59.38 62.50 53.33 78.12 NA NA 80.00 69.57 NA 40.00 52.63 70.83 86.36 61.11 52.17 44.44 71.11 54.55 61.64 54.17 63.16 NA 47.62 61.11 69.57 79.71 83.33 72.73 63.64 60.00 90.00 60.42 66.67 NA 47.06 K cassette RpS5a,I_chrX_17037805_17038646,I_chrX_17037805_17039048,I_chrX_17037805_17040830,I_chrX_17038786_17039048 chrX - chrX_17037805_17039048 chrX_17037805_17038650;chrX_17038750_17039048 chrX_17038651_17038749 chrX_17037705_17037804;chrX_17039049_17039148 99.96 99.94 99.98 99.94 99.98 99.94 99.92 99.94 99.96 99.98 99.98 99.96 99.96 99.94 99.97 99.92 99.98 99.98 99.96 99.97 99.98 98.69 99.96 99.96 99.93 99.94 99.94 99.98 99.86 99.98 99.91 99.96 99.98 99.95 99.94 99.91 99.97 99.92 99.97 99.99 99.87 99.95 99.98 99.97 99.95 99.96 99.96 99.93 99.94 99.92 99.95 99.98 99.96 99.95 99.94 99.98 99.94 99.94 N jcn_only_AA I_chr3L_9481026_9484943,noncoding_11665 chr3L + chr3L_9481349_9484943;chr3L_9481349_9481415 chr3L_9481349_9481457 chr3L_9481282_9481348;chr3L_9484944_9485043 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette RI_chr2L_22735482_22741701,CG17715,I_chr2L_22737141_22741701,I_chr2L_22741825_22741944,I_chr2L_22742106_22746918 chr2L + chr2L_22737580_22741945 chr2L_22737580_22741701;chr2L_22741825_22741945 chr2L_22741702_22741824 chr2L_22737332_22737579;chr2L_22741946_22741987 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.00 100.00 98.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 100.00 K intron_retention Su(var)2-HP2 chr2R - chr2R_10504267_10504347 chr2R_10504266_10504267;chr2R_10504347_10504348 chr2R_10504015_10504266;chr2R_10504348_10504372 0.00 NA 5.88 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA NA NA 4.76 0.00 NA NA 0.00 0.00 NA 0.00 0.00 4.17 0.00 0.00 NA 0.00 0.00 NA NA 7.41 0.00 NA 0.00 0.00 7.14 NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K intron_retention MEP-1,CG42245,noncoding_10195,CG1143 chr3L + chr3L_2631917_2631976 chr3L_2631916_2631917;chr3L_2631976_2631977 chr3L_2631720_2631916;chr3L_2631977_2632121 6.52 4.76 8.89 8.51 0.00 3.12 12.73 6.67 6.06 NA NA 4.76 2.70 0.00 5.00 1.96 0.00 13.33 2.17 14.58 9.68 29.63 7.41 6.67 18.18 17.95 22.22 25.00 42.86 NA 6.52 NA 12.50 3.64 8.00 0.00 21.43 NA 10.00 0.00 NA 4.48 8.00 18.75 NA 14.29 0.00 NA 5.56 0.00 9.38 4.55 0.00 NA 5.13 0.00 0.00 NA N cassette unc-5,E_chr2R_11238100_11240757,I_chr2R_11252444_11252570 chr2R + chr2R_11245218_11246083 chr2R_11245218_11245513;chr2R_11245796_11246083 chr2R_11245514_11245795 chr2R_11244615_11245217;chr2R_11246084_11246254 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 89.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG4699 chr3R + chr3R_11624190_11624445 chr3R_11624189_11624190;chr3R_11624445_11624446 chr3R_11623809_11624189;chr3R_11624446_11624758 75.00 57.89 71.43 70.00 78.57 84.62 90.00 100.00 91.18 45.45 92.86 75.86 71.43 89.47 100.00 81.82 90.00 92.86 80.00 91.67 76.92 75.00 60.00 56.00 63.16 80.00 62.86 62.50 65.22 95.45 76.47 75.00 78.79 95.00 69.23 33.33 52.38 40.91 57.14 70.73 55.17 81.25 78.57 84.21 71.43 64.29 50.00 88.57 63.16 47.83 68.00 66.67 68.42 63.64 82.61 78.95 64.29 85.00 K jcn_only_AA SWAP,RI_chrX_938935_938985,noncoding_21279,I_chrX_941459_982652,CG42259 chrX + chrX_940594_940668 chrX_940594_940651 chrX_940506_940593;chrX_940669_940972 0.00 0.00 0.00 0.00 0.00 2.44 3.33 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 3.85 0.00 1.82 NA 0.00 0.00 2.78 4.17 0.00 1.67 0.00 2.86 0.00 0.00 4.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 2.63 0.00 0.00 0.00 3.70 1.47 0.00 2.38 0.00 1.52 3.08 0.00 0.00 1.22 0.00 K intron_retention CG30339,I_chr2R_5496948_5497550,F_chr2R_5549824_5554869 chr2R - chr2R_5490005_5490066 chr2R_5490004_5490005;chr2R_5490066_5490067 chr2R_5489632_5490004;chr2R_5490067_5490248 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 5.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor jog,I_chrX_19730788_19739571 chrX - chrX_19730788_19744895 chrX_19730806_19744895 chrX_19744896_19745186;chrX_19730688_19730787 0.73 1.45 0.00 1.12 1.72 1.45 1.45 1.20 0.61 0.00 0.00 1.63 0.00 0.00 2.35 2.50 0.00 0.00 0.00 1.55 0.00 0.83 1.88 1.15 1.30 1.82 0.00 0.98 0.00 1.46 1.37 0.00 0.48 0.94 1.41 0.00 1.12 0.00 0.73 0.58 2.27 1.32 0.00 0.73 0.00 0.00 2.50 0.00 0.00 0.00 0.00 1.43 1.14 0.00 0.00 2.22 0.00 1.00 K intron_retention E(bx),I_chr3L_239186_239264,I_chr3L_246324_246699 chr3L - chr3L_239186_239242 chr3L_239185_239186;chr3L_239242_239243 chr3L_239086_239185;chr3L_239243_239329 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor pan chr4 + chr4_106560_107642 chr4_106560_106634 chr4_106479_106559;chr4_107643_107792 0.00 0.00 0.00 1.22 0.00 0.00 1.32 1.05 0.88 0.00 0.00 1.32 8.11 0.00 2.56 1.49 0.00 0.00 2.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 2.13 8.33 1.19 0.00 0.00 NA 0.00 NA 0.00 1.14 6.67 0.00 0.00 NA NA 0.00 NA NA 0.00 K multi_cassette CG40263,F_chr2RHet_1265687_1293040,F_chr2RHet_1298459_1298703,F_chr2RHet_1298459_1311408,F_chr2RHet_1298885_1299622,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1265687_1324445 chr2RHet_1265687_1292103;chr2RHet_1292187_1293055;chr2RHet_1293175_1324445 chr2RHet_1292104_1292186;chr2RHet_1293056_1293174 chr2RHet_1265587_1265686;chr2RHet_1324446_1324530 10.00 10.00 10.00 NA NA 8.33 6.25 5.56 13.04 NA NA 9.09 NA 22.22 NA 10.00 NA NA 0.00 NA NA NA NA 9.09 NA 7.69 NA NA NA NA NA NA NA 15.00 NA NA NA NA NA 30.00 4.55 21.05 22.22 NA NA 14.29 NA NA 20.00 NA 25.00 NA 0.00 NA 28.57 18.18 7.69 7.41 K jcn_only_AD Idh,I_chr3L_8351006_8351949,I_chr3L_8351036_8351655 chr3L - chr3L_8351006_8351949 chr3L_8351006_8351655 chr3L_8350936_8351005;chr3L_8351950_8351962 100.00 100.00 96.67 94.87 100.00 100.00 97.30 96.49 98.82 96.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 95.65 98.90 100.00 96.30 100.00 98.18 100.00 97.14 100.00 97.44 96.67 100.00 NA 100.00 98.00 96.00 100.00 95.83 100.00 97.92 100.00 100.00 100.00 100.00 100.00 97.06 100.00 97.62 100.00 96.97 100.00 100.00 98.21 100.00 97.44 98.08 100.00 97.50 100.00 100.00 K intron_retention Vha55 chr3R - chr3R_8453284_8453361 chr3R_8453283_8453284;chr3R_8453361_8453362 chr3R_8453171_8453283;chr3R_8453362_8453491 69.78 73.33 69.57 76.47 66.67 57.89 50.00 65.52 61.36 NA 66.67 73.17 70.00 71.43 68.42 78.38 69.23 80.00 73.33 64.10 84.62 80.00 71.43 75.00 85.00 82.61 88.24 75.61 73.33 90.91 68.75 57.14 57.14 55.17 80.95 79.17 65.00 66.67 62.07 63.64 81.82 64.10 61.54 67.86 63.64 78.26 75.00 33.33 67.44 100.00 75.86 70.00 94.12 69.23 78.26 66.67 66.67 64.29 K jcn_only_AD gus,I_chr2R_1009158_1009345,RI_chr2R_1009158_1011540,I_chr2R_1009346_1015730 chr2R - chr2R_1009158_1009277;chr2R_1009158_1009241 chr2R_1009158_1009273 chr2R_1009058_1009157;chr2R_1009278_1009300 24.74 NA NA 22.22 NA NA NA 30.00 3.85 NA NA 27.27 NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.12 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.70 NA NA NA NA NA NA NA NA 30.43 K intron_retention CG16758,I_chr3L_2501142_2502594,I_chr3L_2502724_2503142 chr3L - chr3L_2500463_2503142 chr3L_2500462_2500463;chr3L_2503142_2503143 chr3L_2499691_2500462;chr3L_2503143_2503242 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.67 2.22 0.00 0.00 10.00 0.00 8.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 2.53 0.00 0.00 0.00 0.00 0.00 2.04 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL15 chr3LHet + chr3LHet_2397992_2398127 chr3LHet_2397991_2397992;chr3LHet_2398127_2398128 chr3LHet_2397802_2397991;chr3LHet_2398128_2398454 97.18 96.64 95.04 99.05 97.32 96.75 97.77 98.33 97.53 96.70 99.41 97.33 97.32 98.45 97.67 96.36 97.79 98.20 98.94 96.61 97.09 99.52 96.74 94.29 99.10 99.30 96.77 98.75 95.19 95.00 99.48 95.05 99.38 97.18 98.36 94.05 96.80 97.01 95.87 97.04 96.63 97.32 96.67 93.22 98.18 96.49 94.21 99.06 97.25 94.12 92.22 97.87 97.67 90.91 99.40 96.12 96.34 99.35 K intron_retention CG33107 chr3R - chr3R_18409914_18409971 chr3R_18409913_18409914;chr3R_18409971_18409972 chr3R_18409846_18409913;chr3R_18409972_18410073 0.00 0.00 0.00 8.82 0.00 0.00 0.00 0.00 4.55 NA 0.00 6.25 0.00 NA 0.00 8.33 NA 11.11 NA 7.46 0.00 0.00 0.00 6.67 0.00 12.50 8.33 0.00 3.23 0.00 5.56 0.00 4.00 0.00 0.00 0.00 0.00 0.00 8.33 2.94 0.00 2.70 0.00 0.00 0.00 9.09 0.00 0.00 6.67 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.86 K intron_retention I_chrX_3345099_3416710,CG10803,I_chrX_3380218_3380345 chrX + chrX_3381564_3381629 chrX_3381563_3381564;chrX_3381629_3381630 chrX_3381437_3381563;chrX_3381630_3381820 0.00 0.00 0.00 30.00 NA 0.00 4.55 0.00 0.00 NA NA 5.56 NA 9.52 4.76 0.00 NA 0.00 NA 12.50 NA 20.00 5.00 0.00 NA 0.00 15.00 NA NA NA 0.00 NA 6.67 3.70 0.00 NA 0.00 0.00 0.00 0.00 NA 3.45 NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K jcn_only_AD Stat92E,I_chr3R_16365079_16365145,att-ORFB chr3R - chr3R_16365079_16365145 chr3R_16365079_16365121 chr3R_16364979_16365078;chr3R_16365146_16365188 99.59 98.66 98.89 99.13 99.31 100.00 98.09 99.21 99.72 98.65 97.86 100.00 99.26 100.00 100.00 100.00 98.62 99.38 100.00 99.37 99.41 98.75 100.00 99.43 100.00 99.33 98.77 98.41 100.00 99.00 100.00 100.00 100.00 99.59 98.80 98.98 100.00 99.39 100.00 100.00 100.00 100.00 97.46 100.00 100.00 100.00 99.05 100.00 99.63 100.00 100.00 98.81 98.61 99.15 100.00 99.15 100.00 100.00 K intron_retention CG31337 chr3R - chr3R_9370429_9370846 chr3R_9370428_9370429;chr3R_9370846_9370847 chr3R_9370268_9370428;chr3R_9370847_9371139 0.62 0.00 0.00 8.47 0.68 1.24 0.00 2.19 1.45 0.00 0.00 1.15 1.22 0.00 2.38 0.00 0.74 2.21 0.00 1.10 0.00 0.00 1.49 0.87 1.85 0.00 1.18 0.00 4.59 1.27 0.62 1.43 0.00 2.02 0.00 0.58 1.60 0.62 1.32 2.89 0.00 2.00 0.00 0.00 1.38 0.55 0.60 1.37 1.06 0.60 0.60 0.00 0.80 0.00 1.11 0.00 0.44 0.40 K alternative_last_exon lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3963614_3965235 chr2R_3963614_3963797 chr2R_3965236_3966671 chr2R_3963798_3964611 chr2R_3963365_3963613 98.70 98.86 98.51 96.91 98.51 98.53 98.55 98.81 99.32 98.25 98.39 99.21 98.44 98.31 98.72 98.80 98.33 98.59 98.39 99.29 98.25 99.10 99.17 99.09 98.63 98.36 99.00 98.67 98.70 98.82 98.48 98.68 98.89 99.06 98.63 98.59 99.25 98.73 99.31 99.34 97.33 99.31 98.18 98.82 99.07 99.07 98.88 97.89 99.13 98.68 100.00 98.39 98.08 98.70 98.84 98.99 98.72 96.39 K intron_retention sno chrX - chrX_13090544_13090629 chrX_13090543_13090544;chrX_13090629_13090630 chrX_13090050_13090543;chrX_13090630_13091008 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 2.00 4.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG40045,RI_chr3L_24023955_24028531,RI_chr3L_24023958_24028536,I_chr3L_24024771_24028531,I_chr3L_24025959_24028531,I_chr3L_24028601_24028670 chr3L + chr3L_24028119_24028531 chr3L_24028118_24028119;chr3L_24028531_24028532 chr3L_24028052_24028118;chr3L_24028532_24028600 52.78 NA NA NA NA NA NA NA 60.00 NA NA 46.15 NA NA NA 46.15 NA NA NA 60.00 NA 17.65 55.56 NA NA NA NA NA NA NA NA NA NA 72.73 NA NA NA NA NA 47.37 NA 63.64 NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA K intron_retention CG30020,I_chr2R_6778098_6778140 chr2R + chr2R_6779823_6779882 chr2R_6779822_6779823;chr2R_6779882_6779883 chr2R_6778916_6779822;chr2R_6779883_6780426 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.88 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG2813 chr2L + chr2L_575091_575143 chr2L_575095_575143 chr2L_575144_575743;chr2L_574780_575090 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention Mtch,RI_chr3L_184729_185366,E_chr3L_185249_186012,EI_chr3L_185308_185366,I_chr3L_185367_185925 chr3L + chr3L_185304_185366 chr3L_185303_185304;chr3L_185366_185367 chr3L_185267_185303;chr3L_185367_185441 0.75 0.00 1.52 2.31 0.00 0.00 1.88 1.02 1.67 0.00 0.00 1.14 1.94 1.90 1.43 1.11 1.96 0.00 0.70 0.92 2.83 3.31 0.75 0.00 0.00 0.00 2.88 2.80 0.00 0.00 1.79 0.00 1.12 1.10 0.00 0.00 0.00 0.83 0.00 1.42 0.00 0.44 1.90 0.00 1.28 0.49 0.00 1.06 0.91 2.44 0.00 0.00 0.00 3.03 0.00 0.00 0.00 1.83 K intron_retention CG30389,I_chr2R_17044803_17047935 chr2R - chr2R_17044803_17045719 chr2R_17044802_17044803;chr2R_17045719_17045720 chr2R_17044703_17044802;chr2R_17045720_17045781 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 94.44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RI_chrX_1796525_1796585,mip130,CG3573,I_chrX_1820956_1821011,CG11596 chrX + chrX_1817899_1818131 chrX_1817898_1817899;chrX_1818131_1818132 chrX_1817180_1817898;chrX_1818132_1818318 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA fry,I_chr3L_9636648_9656042 chr3L - chr3L_9625271_9625332 chr3L_9625274_9625332 chr3L_9625333_9625699;chr3L_9624985_9625270 60.42 59.52 55.56 61.40 63.16 65.12 49.44 62.39 54.62 55.00 69.77 53.85 56.82 66.67 50.00 50.72 60.00 74.14 59.46 65.32 58.21 53.92 62.30 53.23 60.61 62.50 58.18 61.54 57.35 58.33 64.08 57.14 56.25 69.23 65.00 60.42 75.41 71.88 51.28 61.46 49.44 60.61 54.39 58.93 63.64 63.11 60.71 62.63 54.70 59.15 67.74 57.14 67.57 63.83 66.67 61.04 57.98 59.26 K jcn_only_AD kst,I_chr3L_3367008_3367514 chr3L + chr3L_3367216_3367514;chr3L_3367011_3367514;chr3L_3367008_3367514;chr3L_3366774_3367514 chr3L_3366963_3367514 chr3L_3367515_3367614 0.50 1.56 0.87 2.23 0.00 0.00 0.36 0.52 0.16 0.71 0.50 1.11 0.00 0.39 0.87 0.39 0.00 0.00 0.31 0.18 1.48 0.85 0.31 1.09 1.89 2.19 0.93 0.00 1.97 0.75 0.00 0.74 3.10 0.85 1.22 5.35 0.27 0.56 0.32 0.19 0.52 0.16 0.00 0.00 1.19 0.50 0.44 1.56 0.00 0.00 0.67 0.00 1.10 1.50 0.27 0.34 0.00 0.66 K jcn_only_AA CG10433 chr2R - chr2R_17493699_17493972 chr2R_17493866_17493972 chr2R_17493973_17494122;chr2R_17493181_17493698 1.81 0.91 2.06 0.72 1.01 1.01 2.18 1.63 1.68 2.68 1.06 1.46 2.68 1.24 1.07 1.82 1.81 3.10 4.86 1.01 0.86 3.98 1.27 1.56 1.86 1.83 2.55 5.00 3.06 1.25 1.33 1.69 1.89 1.11 1.87 2.97 1.76 2.07 1.54 2.71 4.05 1.47 1.07 3.14 1.71 2.36 1.97 2.85 1.59 4.52 1.75 2.35 0.98 2.32 1.85 2.11 0.72 1.45 K intron_retention I_chr3R_8822346_8822403,CG7518 chr3R + chr3R_8827698_8828350 chr3R_8827697_8827698;chr3R_8828350_8828351 chr3R_8827671_8827697;chr3R_8828351_8828431 0.00 0.00 0.00 2.50 NA NA 7.41 5.13 4.00 NA NA 10.20 25.00 0.00 0.00 0.00 0.00 0.00 4.55 16.67 NA 15.38 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 12.50 6.67 NA 7.14 3.23 NA 0.00 0.00 NA 3.23 0.00 0.00 NA NA 0.00 NA 10.81 0.00 0.00 NA NA NA 3.23 0.00 0.00 28.57 N jcn_only_AD Gel,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_64100_66310 chr3R_66247_66310 chr3R_66311_66436 100.00 100.00 100.00 98.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD l(2)gl,I_chr2L_17150_19884,I_chr2L_17208_18260,RI_chr2L_17213_18330,I_chr2L_17213_21135,RI_chr2L_20021_20830,I_chr2L_20974_21065 chr2L - chr2L_17213_18025;chr2L_17213_19879 chr2L_17213_18330 chr2L_17113_17212 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.97 NA NA 0.00 0.00 4.00 0.00 3.03 0.00 0.00 3.85 1.75 NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 3.45 0.00 0.00 NA 0.00 4.55 NA 0.00 NA 2.00 5.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 4.55 K alternative_acceptor CG7408 chr3L + chr3L_17872349_17873076;chr3L_17872349_17873049 chr3L_17872349_17872977 chr3L_17872262_17872348;chr3L_17873077_17873164 50.00 NA NA 50.00 NA 40.00 45.45 45.45 75.00 NA NA 42.86 57.14 NA 71.43 38.46 NA 50.00 50.00 75.00 NA NA NA NA NA NA NA NA NA NA 57.14 NA NA 50.00 NA NA NA NA NA NA NA 57.14 NA NA NA NA NA NA 70.00 NA NA NA NA NA NA NA NA NA K intron_retention RI_chr3L_20370940_20371530,I_chr3L_20374844_20374891,fbl chr3L + chr3L_20383926_20383985 chr3L_20383925_20383926;chr3L_20383985_20383986 chr3L_20383790_20383925;chr3L_20383986_20384554 5.56 5.56 6.35 8.20 6.25 0.00 0.00 7.89 8.00 6.98 3.23 5.77 0.00 12.50 3.92 11.39 0.00 10.20 1.96 11.76 0.00 9.64 9.41 4.88 8.11 8.51 12.35 10.91 4.35 3.92 7.23 10.26 3.23 8.54 3.64 7.02 2.13 5.00 6.25 4.17 4.65 6.90 2.63 6.10 0.00 7.89 3.37 0.00 5.10 2.25 4.00 10.00 0.00 3.08 9.23 6.49 2.82 2.99 K intron_retention fru chr3R - chr3R_14257757_14258285 chr3R_14257756_14257757;chr3R_14258285_14258286 chr3R_14257701_14257756;chr3R_14258286_14258540 25.00 NA NA 25.00 NA NA NA NA NA NA NA NA 60.00 NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 46.15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA NA NA NA K intron_retention pxb,I_chr3R_11504971_11505107 chr3R + chr3R_11497903_11504857 chr3R_11497902_11497903;chr3R_11504857_11504858 chr3R_11497487_11497902;chr3R_11504858_11504970 31.79 NA NA 23.53 NA NA 42.86 36.36 36.36 NA NA 15.38 30.77 NA 33.33 45.45 NA NA NA 24.24 NA NA 23.53 36.36 NA NA 25.00 NA NA NA NA NA 0.00 22.22 NA NA NA NA 23.53 45.45 NA 32.00 NA 35.71 NA NA NA NA 32.00 NA 31.58 NA NA NA 25.00 NA 35.71 NA K jcn_only_AA CG7843,I_chr2R_1972736_1972822 chr2R - chr2R_1968540_1969240 chr2R_1968921_1969240 chr2R_1969241_1969345;chr2R_1968340_1968539 54.50 59.06 60.00 37.50 56.47 60.49 34.85 48.62 53.57 59.72 60.44 61.02 62.14 48.10 56.88 67.11 42.86 52.94 59.14 54.98 58.33 51.16 52.65 48.57 50.00 48.57 55.91 60.71 51.64 48.06 59.75 49.69 54.73 54.87 52.94 30.86 55.14 50.00 52.51 57.39 52.03 55.81 59.26 59.26 44.71 42.78 49.73 47.28 57.69 44.51 57.23 64.04 53.19 51.59 58.59 58.14 54.50 45.80 N alternative_acceptor CG13900,I_chr3L_830745_830907 chr3L - chr3L_830745_830907;chr3L_830814_830907;chr3L_830729_830907 chr3L_830715_830907 chr3L_830908_831007;chr3L_830702_830714 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG3534,I_chr3R_12822371_12823186 chr3R + chr3R_12822371_12823186 chr3R_12822371_12822774;chr3R_12822897_12823186 chr3R_12822775_12822896 chr3R_12822271_12822370;chr3R_12823187_12823286 100.00 100.00 96.15 90.62 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 96.88 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 K alternative_acceptor Nop60B,I_chr2R_20062491_20062553,I_chr2R_20063248_20063949,F_chr2R_20073291_20073744 chr2R + chr2R_20062491_20062553 chr2R_20062491_20062550 chr2R_20062404_20062490;chr2R_20062554_20062653 100.00 99.07 98.96 100.00 97.73 100.00 100.00 100.00 99.59 100.00 100.00 100.00 98.78 100.00 99.02 100.00 98.67 98.97 98.85 100.00 98.86 100.00 99.53 100.00 100.00 100.00 100.00 100.00 100.00 99.09 100.00 100.00 99.19 99.31 99.00 99.11 100.00 100.00 100.00 100.00 100.00 99.43 98.65 98.15 100.00 100.00 100.00 99.13 99.50 100.00 99.41 99.09 100.00 99.07 100.00 100.00 100.00 99.12 K alternative_donor Hr39,I_chr2L_21256047_21256260 chr2L + chr2L_21237347_21238280;chr2L_21237385_21238280;chr2L_21237421_21238280;chr2L_21237397_21238280;chr2L_21237405_21238280 chr2L_21237364_21238280 chr2L_21238281_21238529;chr2L_21237247_21237346 1.67 9.09 0.00 0.00 0.00 0.00 9.09 5.88 0.00 11.11 0.00 4.55 0.00 15.38 25.00 3.57 0.00 9.09 0.00 7.89 10.00 12.50 9.09 0.00 0.00 7.69 0.00 20.00 14.29 12.50 0.00 NA 9.09 9.09 0.00 9.09 NA 0.00 7.14 3.33 NA 0.00 0.00 5.88 0.00 0.00 16.67 5.56 4.17 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K cassette Vha100-1,I_chr3R_24958227_24960770,RI_chr3R_24959152_24959582,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24958227_24960770;chr3R_24959152_24960770 chr3R_24958227_24959582,chr3R_24959152_24959582;chr3R_24959684_24960770 chr3R_24959583_24959683 chr3R_24958127_24958226;chr3R_24960771_24960870 39.58 48.57 46.81 32.65 55.56 51.02 38.57 51.61 53.40 32.61 56.25 59.76 15.91 52.78 45.61 39.58 45.00 63.16 18.18 63.55 56.52 36.76 38.57 37.60 29.23 41.67 31.33 20.37 22.89 34.57 47.83 29.55 32.77 53.85 33.33 36.11 42.40 43.04 37.29 43.96 20.45 47.54 50.00 31.43 39.02 36.84 40.00 23.81 51.06 34.55 33.90 36.73 34.55 41.27 55.77 48.21 44.12 23.91 K intron_retention CG6782,CG6783 chr3R - chr3R_7390434_7390505 chr3R_7390433_7390434;chr3R_7390505_7390506 chr3R_7390162_7390433;chr3R_7390506_7390833 30.80 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA 25.00 41.67 35.29 NA NA 35.71 NA NA NA NA NA NA NA NA NA 26.32 NA NA 38.89 NA NA NA 22.22 NA 40.00 16.67 NA NA 14.29 50.00 NA NA NA NA NA NA NA K intron_retention Trp1 chr2L + chr2L_10011909_10012399 chr2L_10011908_10011909;chr2L_10012399_10012400 chr2L_10011607_10011908;chr2L_10012400_10013170 52.17 52.00 53.85 39.13 55.56 69.09 53.09 48.80 54.08 46.88 33.33 52.07 89.09 63.16 59.02 58.47 55.26 57.50 57.33 52.17 31.71 47.37 36.17 52.54 64.52 43.59 69.84 61.11 55.56 41.18 53.33 41.94 55.56 51.40 47.83 33.33 61.29 43.90 68.09 48.10 53.33 53.54 59.62 35.71 55.00 43.16 46.88 37.66 49.61 59.65 52.54 48.48 38.10 46.51 59.74 49.15 49.18 33.57 K alternative_acceptor alpha-Cat,I_chr3L_23319861_23321813,I_chr3L_23327841_23328002 chr3L - chr3L_23322021_23322078 chr3L_23322024_23322078 chr3L_23322079_23322498;chr3L_23321814_23322020 100.00 100.00 100.00 100.00 97.30 97.50 100.00 99.11 98.53 95.45 100.00 98.94 100.00 100.00 100.00 99.07 98.36 97.30 98.70 99.03 100.00 100.00 100.00 100.00 100.00 100.00 98.15 95.83 100.00 98.51 100.00 100.00 98.88 99.09 97.62 97.67 100.00 96.55 97.14 98.82 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.46 99.19 97.83 98.18 100.00 100.00 100.00 98.63 97.73 100.00 100.00 K alternative_acceptor Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8462792_8463253 chr3L_8462792_8463187 chr3L_8462665_8462791;chr3L_8463254_8463287 55.56 NA NA 50.00 NA NA NA 60.00 50.00 NA NA 55.56 NA NA NA NA NA NA NA 50.00 NA NA 46.15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 55.56 NA 66.67 NA NA NA 55.56 NA 83.33 NA NA 44.44 NA NA NA NA NA NA NA K intron_retention gish chr3R + chr3R_12127074_12127526 chr3R_12127073_12127074;chr3R_12127526_12127527 chr3R_12126967_12127073;chr3R_12127527_12127541 9.09 9.09 20.00 11.54 NA NA 24.24 11.43 13.04 0.00 NA 5.95 13.64 0.00 16.00 20.00 10.71 0.00 0.00 10.64 12.50 9.80 8.51 7.41 0.00 9.09 10.71 11.11 6.45 0.00 9.38 11.76 9.68 8.33 6.25 1.79 6.45 0.00 8.33 16.28 8.70 6.25 13.33 4.65 NA 13.79 0.00 24.00 7.14 6.98 7.50 8.33 0.00 12.50 23.08 15.15 15.15 14.71 K jcn_only_AD RhoGAP71E,I_chr3L_15583097_15589765 chr3L + chr3L_15582166_15582458 chr3L_15582377_15582458 chr3L_15582459_15583096;chr3L_15581999_15582165 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA K alternative_acceptor RpL22,noncoding_21234,snoRNA:Psi18S-531,snoRNA:Psi28S-2179 chrX - chrX_657025_658334;chrX_657022_658334 chrX_657019_658334 chrX_658335_658556;chrX_656593_657018 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.10 0.09 0.00 0.14 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.13 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.06 0.11 0.06 0.15 0.00 0.00 0.00 0.00 0.16 0.00 0.11 0.00 0.16 0.19 0.00 0.10 0.09 0.07 0.06 K jcn_only_AD Vap-33-1 chrX + chrX_3843206_3843513;chrX_3843210_3843513;chrX_3843099_3843513;chrX_3843214_3843513 chrX_3843406_3843513 chrX_3843514_3843746;chrX_3843030_3843098 98.46 99.00 99.10 96.24 98.90 97.62 98.23 97.32 96.88 100.00 100.00 98.04 99.14 99.16 99.18 99.53 98.46 97.56 100.00 98.32 99.03 92.79 95.00 100.00 97.56 97.59 100.00 100.00 95.00 98.89 98.29 100.00 99.26 97.07 96.34 97.56 100.00 100.00 100.00 100.00 100.00 97.95 100.00 97.14 98.28 98.08 100.00 98.81 97.78 97.01 91.78 96.15 98.78 100.00 99.08 96.43 97.35 97.62 K intron_retention I_chrX_4000307_4003527,CG4857 chrX + chrX_4013051_4014328 chrX_4013050_4013051;chrX_4014328_4014329 chrX_4012789_4013050;chrX_4014329_4014457 17.91 19.05 14.29 4.26 10.34 35.71 18.18 9.62 10.45 NA 11.11 15.69 17.65 13.79 19.05 11.32 12.50 4.76 13.16 24.00 9.09 7.41 14.29 39.29 13.33 12.50 22.22 25.00 NA 22.22 35.94 NA 14.29 9.62 22.73 9.52 23.08 33.33 25.00 17.14 NA 20.45 9.09 22.22 NA 35.71 26.67 18.18 9.52 36.36 21.95 30.00 NA 50.00 10.26 47.06 33.33 NA K jcn_only_AA maf-S,CG11110 chr2R + chr2R_16528624_16528673;chr2R_16528624_16528670 chr2R_16528624_16528685 chr2R_16528563_16528623;chr2R_16528686_16529179 97.14 96.55 96.40 95.45 95.51 98.17 96.45 96.47 95.48 100.00 98.77 98.16 97.17 95.24 95.33 94.05 96.25 96.34 98.17 98.21 96.67 96.95 98.92 96.88 97.14 97.09 94.59 96.00 95.95 97.65 98.28 97.33 97.24 95.45 92.13 97.18 96.59 100.00 98.26 98.13 100.00 97.21 98.81 98.88 97.90 98.85 97.14 96.92 97.59 97.87 96.59 96.15 96.61 98.63 96.75 100.00 98.18 97.76 K jcn_only_AA CAP-D2 chr3R + chr3R_25501579_25501620;chr3R_25501579_25501909 chr3R_25501579_25501655 chr3R_25501398_25501578;chr3R_25501910_25501927 100.00 100.00 100.00 97.26 100.00 100.00 97.50 97.44 100.00 NA 100.00 100.00 100.00 100.00 100.00 98.28 100.00 100.00 100.00 98.72 96.00 NA 93.55 100.00 96.43 100.00 100.00 100.00 95.83 100.00 87.88 NA 97.87 98.31 100.00 96.67 91.30 100.00 100.00 94.87 95.45 100.00 97.44 NA NA 100.00 100.00 100.00 98.92 NA 95.00 NA NA NA 100.00 NA NA NA K intron_retention CG14872,REI_chr3R_11334285_11334336 chr3R - chr3R_11334285_11334336 chr3R_11334284_11334285;chr3R_11334336_11334337 chr3R_11334185_11334284;chr3R_11334337_11334436 6.25 NA NA NA NA NA 4.76 NA 5.56 NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA 0.00 NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA 12.50 K mutually_exclusive I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499338_1499771,chr3L_1499880_1501798;chr3L_1499338_1500244,chr3L_1500389_1501798 chr3L_1499338_1501350,chr3L_1501398_1501798 chr3L_1499772_1499879;chr3L_1500245_1500388 chr3L_1501351_1501397 chr3L_1499043_1499337;chr3L_1501799_1501892 14.29 NA 0.00 0.00 NA NA NA 0.00 0.00 16.67 NA 7.69 NA NA 33.33 0.00 NA NA 12.50 11.11 NA 0.00 30.00 20.00 0.00 0.00 25.00 9.09 NA 50.00 18.18 NA 50.00 0.00 0.00 0.00 NA 20.00 42.86 33.33 33.33 9.09 NA 40.00 0.00 14.29 40.00 37.50 11.11 25.00 25.00 33.33 NA 0.00 14.29 33.33 0.00 20.00 K intron_retention mud chrX + chrX_14150791_14152369 chrX_14150790_14150791;chrX_14152369_14152370 chrX_14150518_14150790;chrX_14152370_14152605 7.41 3.92 4.17 14.71 4.76 14.29 8.33 9.09 7.27 7.41 6.67 6.35 9.52 6.67 2.86 23.33 0.00 14.71 23.81 7.14 4.76 0.00 5.80 7.50 5.00 10.34 8.89 23.53 10.53 19.51 12.50 7.50 18.92 10.42 2.94 5.26 8.22 4.44 8.86 8.00 8.57 11.29 7.41 6.67 5.26 8.45 6.06 27.27 10.20 4.48 6.58 0.00 4.35 4.05 8.33 4.05 6.12 20.00 K alternative_donor iPLA2-VIA chr3L - chr3L_9856717_9856876;chr3L_9856717_9857106 chr3L_9856717_9857292 chr3L_9856421_9856716;chr3L_9857293_9857459 86.67 90.70 85.00 89.36 83.87 84.62 88.12 87.91 88.07 65.00 86.84 83.33 87.18 89.83 87.27 76.62 86.96 85.96 86.79 86.24 90.20 79.44 88.89 84.48 84.00 82.69 74.51 75.00 72.46 79.17 87.88 76.92 77.03 88.17 89.47 89.66 85.25 88.00 83.05 89.01 81.82 85.56 85.71 87.30 66.67 86.67 89.58 68.18 88.89 86.11 87.67 90.38 87.50 95.00 86.67 89.19 94.87 84.38 K jcn_only_AD CG7671,RI_chr3R_14192652_14192789 chr3R + chr3R_14192652_14192789 chr3R_14192725_14192789 chr3R_14192790_14192889;chr3R_14192552_14192651 100.00 100.00 97.53 100.00 98.41 100.00 97.96 100.00 99.26 100.00 97.44 100.00 100.00 98.48 100.00 100.00 100.00 100.00 95.35 99.50 97.50 100.00 100.00 98.86 98.44 100.00 100.00 100.00 96.97 100.00 97.83 98.48 100.00 100.00 100.00 100.00 99.28 100.00 99.31 99.38 100.00 100.00 100.00 100.00 99.27 100.00 100.00 98.17 100.00 100.00 100.00 96.23 96.88 98.73 100.00 100.00 98.70 100.00 K intron_retention CG16971,CG33229,I_chr3L_225856_225909,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_225141_225725 chr3L_225140_225141;chr3L_225725_225726 chr3L_224973_225140;chr3L_225726_225849 2.16 2.90 3.49 31.63 3.49 2.75 1.61 1.91 1.76 1.96 1.57 2.09 2.24 2.23 1.87 3.37 1.80 1.53 2.18 1.25 1.52 3.80 1.82 1.98 3.47 3.81 3.36 4.29 3.11 2.53 1.89 2.29 1.32 2.00 2.59 6.93 1.22 1.86 1.82 1.87 3.55 2.03 1.84 0.83 3.60 2.34 2.58 1.72 3.04 4.11 1.80 1.36 2.16 3.88 1.73 1.11 3.70 2.85 K multi_cassette Vha100-1,I_chr3R_24958227_24960770,RI_chr3R_24959152_24959582,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24959152_24960770 chr3R_24959152_24959582;chr3R_24959684_24960278;chr3R_24960321_24960770 chr3R_24959583_24959683;chr3R_24960279_24960320 chr3R_24959060_24959151;chr3R_24960771_24960870 9.09 11.43 7.41 19.44 5.88 13.04 9.52 18.18 12.24 6.45 12.50 41.07 2.70 16.67 12.50 7.41 5.26 20.00 0.00 14.29 19.05 9.68 10.47 6.49 9.09 13.79 5.88 2.56 5.00 4.00 19.05 6.67 5.41 10.81 6.67 12.50 8.82 6.98 9.86 4.88 2.99 9.38 5.88 6.38 9.80 8.70 7.14 1.67 12.24 9.09 8.11 10.71 8.33 5.88 12.00 10.71 10.53 2.90 K alternative_acceptor aux chr3R + chr3R_51162_51255 chr3R_51162_51219 chr3R_50788_51161;chr3R_51256_52181 97.96 94.12 95.92 98.41 100.00 97.37 95.24 96.97 98.95 96.55 97.62 95.18 97.30 100.00 97.96 95.74 97.56 97.73 98.04 100.00 100.00 98.39 96.39 96.20 97.73 95.24 98.46 98.18 95.45 98.15 100.00 100.00 100.00 98.39 100.00 96.00 98.81 98.39 96.51 97.92 96.67 100.00 97.56 98.48 98.18 97.87 97.96 97.78 98.82 98.21 98.53 97.73 100.00 100.00 97.96 100.00 100.00 97.67 K intron_retention I_chr2R_4927307_4927362,Ance-4,CG8193 chr2R - chr2R_4930115_4930170 chr2R_4930114_4930115;chr2R_4930170_4930171 chr2R_4929755_4930114;chr2R_4930171_4930932 0.00 0.69 0.91 1.15 0.00 0.00 0.00 0.45 0.00 0.00 0.00 1.01 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.49 0.00 0.58 0.00 0.00 0.00 0.35 0.00 0.00 0.42 0.00 0.31 0.00 0.00 0.00 0.75 0.00 0.00 0.41 0.64 0.00 0.00 1.26 0.00 0.00 0.00 0.00 0.00 K intron_retention Shawn_Tyler,CG14207,RI_chrX_19502515_19504413,CE_chrX_19503187_19504413 chrX + chrX_19504496_19504560 chrX_19504495_19504496;chrX_19504560_19504561 chrX_19504414_19504495;chrX_19504561_19504656 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.79 0.00 0.00 0.00 0.00 1.77 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.02 0.00 0.00 0.66 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention sut1,I_chr2R_3970908_3972035,sut2 chr2R + chr2R_3973418_3973486 chr2R_3973417_3973418;chr2R_3973486_3973487 chr2R_3973205_3973417;chr2R_3973487_3973589 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Tif-IA,RI_chr2L_22250854_22257652 chr2L + chr2L_22253333_22253386;chr2L_22253333_22253421 chr2L_22253333_22253424 chr2L_22253256_22253332;chr2L_22253425_22253685 9.76 NA NA NA NA NA 17.65 22.73 6.06 NA NA 3.70 NA NA NA NA NA NA NA 7.41 NA NA NA NA NA NA 15.00 NA NA NA 9.76 NA NA 3.33 NA NA NA NA 19.05 NA NA 10.34 NA NA NA 4.55 NA NA 10.00 NA 9.52 NA NA NA NA NA NA NA K jcn_only_AA CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3018025_3018163;chr2L_3018018_3018163;chr2L_3018038_3018163 chr2L_3018082_3018163 chr2L_3018164_3018185;chr2L_3017982_3018017 92.59 NA NA 92.59 NA 85.00 97.06 97.73 94.34 NA NA 100.00 NA 90.48 NA 97.96 NA NA NA 95.45 NA 96.67 NA NA NA NA NA NA NA NA 97.83 84.00 NA 92.00 NA NA NA NA NA 87.23 92.00 89.29 NA 94.29 91.67 94.87 NA 92.50 93.18 NA NA NA NA NA 90.48 NA NA 81.82 K alternative_acceptor Hil chr2R - chr2R_16502439_16505571 chr2R_16502478_16505571 chr2R_16505572_16505719;chr2R_16502011_16502438 0.00 NA NA NA NA NA NA NA NA 0.00 NA 7.69 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 K intron_retention Cp190,I_chr3R_11100788_11100846,F_chr3R_11104164_11104239 chr3R - chr3R_11100334_11100846 chr3R_11100333_11100334;chr3R_11100846_11100847 chr3R_11099837_11100333;chr3R_11100847_11100931 8.08 15.56 6.85 6.54 10.00 11.32 3.95 7.00 9.52 3.64 4.62 4.35 6.06 6.78 8.93 8.16 6.38 4.11 7.46 8.72 6.52 10.14 10.89 12.24 5.36 6.67 16.36 26.23 7.59 12.66 10.17 11.76 13.16 7.50 6.67 4.76 15.07 16.28 7.84 6.67 0.00 7.27 12.50 13.79 1.45 8.43 6.49 5.62 8.08 11.76 12.90 10.53 10.17 11.32 6.94 14.00 11.90 4.90 K intron_retention lin chr2R + chr2R_4802513_4802569 chr2R_4802512_4802513;chr2R_4802569_4802570 chr2R_4802033_4802512;chr2R_4802570_4805741 6.06 5.56 3.45 6.67 0.00 0.00 8.33 5.71 1.67 0.00 4.35 9.52 7.41 7.69 6.06 0.00 0.00 0.00 0.00 7.14 3.70 28.57 12.70 8.00 22.50 6.25 14.00 24.32 24.32 6.52 0.00 0.00 3.45 0.00 12.50 25.00 6.56 6.12 7.41 5.97 15.62 8.06 0.00 5.71 10.81 5.71 11.11 3.12 0.00 13.79 11.11 13.33 3.12 0.00 2.70 2.50 8.70 0.00 K intron_retention Aats-cys chr2R + chr2R_12033084_12033147 chr2R_12033083_12033084;chr2R_12033147_12033148 chr2R_12032485_12033083;chr2R_12033148_12033415 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD l(2)k01209,I_chr2R_13308079_13310771,I_chr2R_13309452_13310771,RI_chr2R_13310877_13311160 chr2R + chr2R_13309417_13311160;chr2R_13308486_13311160;chr2R_13308079_13311160 chr2R_13309452_13311160 chr2R_13311161_13311260;chr2R_13307979_13308078 57.93 63.58 62.16 61.72 68.18 45.05 68.45 49.19 65.18 62.50 52.63 55.28 69.62 58.33 52.63 63.87 49.06 50.00 61.05 65.89 56.84 48.82 60.16 61.85 55.30 61.11 63.43 41.51 64.44 55.03 59.29 56.44 35.93 57.93 51.75 53.68 71.03 55.62 63.76 40.88 42.96 56.14 61.11 66.83 58.14 53.12 53.39 56.73 58.58 65.00 50.77 58.95 57.43 62.50 55.10 54.48 60.00 40.40 N cassette CG17018,R_chr2L_22312023_22363414 chr2L + chr2L_22354970_22365192 chr2L_22354970_22363429;chr2L_22364295_22365192 chr2L_22363430_22364294 chr2L_22354872_22354969;chr2L_22365193_22365324 100.00 100.00 100.00 97.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD l(2)37Cc,l(2)37Cb chr2L - chr2L_19122818_19123177 chr2L_19122818_19123120 chr2L_19122040_19122817;chr2L_19123178_19123556 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.82 100.00 100.00 100.00 100.00 100.00 K intron_retention CG15011 chr3L - chr3L_4257257_4257311 chr3L_4257256_4257257;chr3L_4257311_4257312 chr3L_4257076_4257256;chr3L_4257312_4257520 7.85 0.00 4.35 2.50 12.50 21.05 13.51 0.00 12.00 0.00 7.69 6.67 0.00 11.11 9.09 13.33 13.33 8.00 10.00 17.54 0.00 0.00 12.50 11.11 NA 10.00 13.04 22.22 10.53 NA 25.00 11.76 0.00 5.71 10.53 NA 0.00 3.70 3.45 8.33 6.67 14.29 5.88 NA 0.00 12.00 NA 0.00 8.33 9.68 0.00 NA 6.67 NA 7.41 0.00 0.00 0.00 K alternative_donor CG33232,I_chr3L_2484838_2495010,CG1146,noncoding_10153 chr3L + chr3L_2488891_2490979 chr3L_2489010_2490979 chr3L_2490980_2492250;chr3L_2488838_2488890 100.00 100.00 100.00 100.00 NA 100.00 100.00 90.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 K jcn_only_AD CG3328,I_chr2R_20051089_20053935 chr2R + chr2R_20050225_20053935 chr2R_20050243_20053935 chr2R_20053936_20054021;chr2R_20050034_20050224 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.76 NA NA NA NA 8.70 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_donor CREF_chr3R_5589662_5589762,CG8500 chr3R + chr3R_5610483_5611473 chr3R_5610546_5611473 chr3R_5611474_5611635;chr3R_5610477_5610482 9.09 14.29 5.26 12.50 27.27 7.69 12.50 8.82 5.71 NA NA 16.00 5.56 0.00 8.33 16.00 NA 38.89 10.53 13.79 NA NA NA NA NA 27.27 NA NA NA NA 8.33 NA NA 12.00 NA NA NA NA NA 5.88 NA 14.71 NA NA NA NA NA NA 8.82 NA 6.25 NA NA NA 9.09 NA NA 8.33 K alternative_donor CG17471,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1217104_1217473;chr4_1217104_1217302;chr4_1217104_1217383 chr4_1217104_1217333 chr4_1217009_1217103;chr4_1217474_1217480 50.00 NA 60.00 42.86 NA NA 53.85 46.67 47.06 NA NA 42.86 33.33 50.00 NA 53.33 NA NA 50.00 33.33 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA 63.64 NA NA NA NA NA NA NA 50.00 60.00 NA NA NA NA NA 42.86 NA NA NA NA NA 50.00 NA NA NA K alternative_last_exon Sec16,I_chrX_12501913_12502010,I_chrX_12502899_12502973 chrX + chrX_12499422_12501730 chrX_12499422_12499835,chrX_12499422_12499737 chrX_12501731_12501912 chrX_12499836_12499961 chrX_12498897_12499421 4.00 4.65 6.06 5.17 9.38 3.45 8.33 4.00 3.53 22.22 0.00 3.08 0.00 3.70 2.94 3.03 10.00 3.70 10.00 1.89 0.00 8.93 4.44 2.74 6.52 5.26 3.28 2.38 7.55 5.45 8.33 3.33 9.62 8.93 7.32 3.85 3.16 5.26 2.38 6.10 7.14 2.82 0.00 4.08 2.04 2.04 3.92 8.00 3.33 3.92 2.94 10.00 6.06 2.63 5.71 6.06 2.22 5.88 K alternative_donor l(2)03709,I_chr2R_14707617_14707700,I_chr2R_14708048_14708095 chr2R + chr2R_14707007_14707125 chr2R_14707030_14707125 chr2R_14707126_14707270;chr2R_14707001_14707006 85.71 81.25 86.00 84.62 90.00 91.18 85.71 76.06 91.03 71.43 84.78 83.78 95.45 95.65 85.00 86.11 88.64 90.24 92.86 82.35 90.91 76.00 72.73 88.89 100.00 76.47 NA NA 80.00 61.54 83.08 82.14 84.85 81.25 NA NA 90.91 90.00 100.00 68.42 88.24 88.68 92.11 70.00 85.94 77.78 NA 83.33 85.71 NA 90.00 90.91 87.50 NA 83.08 NA 100.00 81.82 K jcn_only_AD CG15173,RI_chr2L_19044304_19044369 chr2L - chr2L_19043884_19043945;chr2L_19043884_19043935 chr2L_19043884_19043931 chr2L_19043535_19043883;chr2L_19043946_19044083 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 3.57 NA NA NA 0.00 NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 3.70 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 0.00 NA K alternative_acceptor CG11009,I_chr3L_12844823_12845526,I_chr3L_12845441_12845526 chr3L + chr3L_12845378_12845529 chr3L_12845378_12845526 chr3L_12845344_12845377;chr3L_12845530_12845621 92.31 93.33 91.67 90.00 92.31 85.00 90.00 90.62 91.30 NA 94.74 92.16 89.74 92.86 94.74 90.62 92.00 93.75 94.74 97.67 72.00 93.10 100.00 95.45 93.33 90.91 95.65 78.57 100.00 100.00 89.58 96.43 86.49 91.43 82.35 88.00 91.67 92.31 88.89 97.44 91.49 95.65 92.31 92.59 97.83 91.49 94.12 96.88 88.24 91.84 94.44 91.67 NA 87.50 100.00 74.07 96.00 96.88 K alternative_acceptor CG31999,I_chr4_238453_238873,I_chr4_238809_238873,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_238121_238873;chr4_238453_238873 chr4_238809_238873 chr4_238874_238973;chr4_238032_238120 0.79 0.00 1.96 3.85 0.00 0.00 1.06 1.98 0.72 0.00 4.76 0.75 2.78 1.43 1.72 0.99 1.69 0.00 1.14 1.80 2.56 0.00 0.00 0.00 0.00 3.12 3.70 NA 0.00 0.00 0.00 2.50 2.70 0.81 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.76 1.79 0.00 0.00 1.43 0.00 2.00 1.27 2.50 2.17 0.00 2.94 0.00 0.00 0.00 1.52 1.37 N multi_cassette CG1161,RI_chr3R_1181273_1181459,I_chr3R_1182079_1182146 chr3R + chr3R_1181273_1182146 chr3R_1181273_1181555;chr3R_1181665_1181724;chr3R_1181851_1182146 chr3R_1181556_1181664;chr3R_1181725_1181850 chr3R_1181173_1181272;chr3R_1182147_1182246 100.00 100.00 100.00 100.00 100.00 100.00 95.29 100.00 97.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.19 100.00 96.45 94.89 95.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.94 100.00 100.00 100.00 100.00 100.00 100.00 96.69 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.27 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA JTBR chr3L - chr3L_1802744_1802803 chr3L_1802754_1802803 chr3L_1802804_1802835;chr3L_1802008_1802743 30.66 NA 19.05 40.82 20.00 25.00 27.12 26.32 29.73 NA 37.50 42.42 27.27 33.33 30.77 24.32 28.00 34.78 35.00 14.29 22.73 34.78 NA NA NA NA NA NA 60.00 NA 30.56 60.47 46.67 39.58 NA NA NA NA NA 33.75 NA 29.63 35.00 30.30 31.03 39.13 NA 26.47 26.67 NA NA NA NA NA 21.74 NA NA 36.08 K intron_retention uzip,I_chr2R_20916008_20916468 chr2R + chr2R_20899701_20900155 chr2R_20899700_20899701;chr2R_20900155_20900156 chr2R_20899595_20899700;chr2R_20900156_20900229 3.28 2.56 6.52 11.76 3.85 5.26 32.26 6.25 0.00 6.67 0.00 2.86 7.14 6.45 5.00 4.00 4.44 3.12 0.00 2.17 0.00 7.55 5.41 1.82 14.81 5.71 5.13 0.00 2.86 2.50 1.52 0.00 0.00 4.11 4.76 14.58 0.00 8.70 7.41 1.89 5.26 5.00 0.00 4.00 0.00 2.13 0.00 0.00 5.56 6.45 3.64 0.00 0.00 0.00 3.28 1.82 0.00 0.00 K alternative_donor CG32772,CG6903 chrX + chrX_4803353_4803484;chrX_4803242_4803484;chrX_4803395_4803484 chrX_4803206_4803484 chrX_4803485_4803830;chrX_4803181_4803205 0.00 NA NA 0.00 NA NA 25.00 0.00 0.00 NA NA 25.00 NA 0.00 NA 0.00 NA NA 33.33 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 25.00 0.00 NA NA 25.00 NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 K intron_retention Oda,REI_chr2R_8055709_8059881,EI_chr2R_8055709_8060842,I_chr2R_8055709_8061425,EI_chr2R_8055709_8061447,EI_chr2R_8055709_8061652,I_chr2R_8055709_8061701,I_chr2R_8057550_8058428,RI_chr2R_8057550_8061595,mir-281b,mir-281bS,mir-281a,mir-281aS,I_chr2R_8061652_8061719 chr2R - chr2R_8055709_8061595 chr2R_8055708_8055709;chr2R_8061595_8061596 chr2R_8055609_8055708;chr2R_8061596_8061651 0.00 0.57 0.00 0.52 0.00 0.00 0.52 0.48 0.53 0.00 0.00 0.38 0.56 0.00 0.35 0.30 0.57 0.00 0.00 0.41 0.00 0.00 0.42 0.00 0.00 0.00 0.20 0.69 0.71 0.00 0.00 0.00 0.32 0.31 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 K alternative_donor CG17471,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1217104_1217473;chr4_1217104_1217333;chr4_1217104_1217383 chr4_1217104_1217302 chr4_1217009_1217103;chr4_1217474_1217480 0.00 NA 0.00 14.29 NA NA 0.00 6.67 0.00 NA NA 0.00 0.00 0.00 NA 6.67 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 7.14 NA NA NA NA NA 0.00 NA NA NA N intron_retention l(3)02640,I_chr3L_1337063_1337270 chr3L + chr3L_1335289_1337270 chr3L_1335288_1335289;chr3L_1337270_1337271 chr3L_1335041_1335288;chr3L_1337271_1337370 12.70 NA NA NA NA NA 11.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.38 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG31712,I_chr2L_9935570_9935951,CREI_chr2L_9938511_9938564,RI_chr2L_9942818_9944294,I_chr2L_9944682_9947179 chr2L - chr2L_9935570_9937237 chr2L_9935570_9935951 chr2L_9935486_9935569;chr2L_9937238_9937510 1.92 0.00 NA 6.98 NA NA 9.52 0.00 7.69 NA NA 3.85 NA NA NA NA NA NA NA 1.89 NA 3.85 NA 4.76 NA 0.00 NA NA 0.00 3.70 NA 0.00 1.92 8.00 NA NA 4.55 NA NA 4.76 6.45 8.33 NA 0.00 0.00 0.00 NA 0.00 13.04 NA 0.00 NA 0.00 NA NA NA NA 0.00 K jcn_only_AD Dsp1,I_chrX_16231287_16231413 chrX + chrX_16227752_16228333;chrX_16228273_16228333;chrX_16227804_16228333;chrX_16227797_16228333 chrX_16227677_16228333 chrX_16228334_16228446;chrX_16227667_16227676 20.00 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Cf2,I_chr2L_4882802_4882864 chr2L - chr2L_4882493_4882888 chr2L_4882493_4882864 chr2L_4882368_4882492;chr2L_4882889_4882964 38.20 NA NA NA NA NA NA 10.00 61.90 NA NA NA NA NA NA NA NA NA NA 42.86 NA 38.89 42.31 NA NA NA 33.33 25.00 62.07 30.77 NA NA 36.96 NA NA NA NA NA NA 37.50 28.57 75.00 NA NA NA 40.91 NA 36.73 NA NA NA NA NA NA NA NA NA 39.39 K intron_retention inx2 chrX + chrX_6892777_6892990 chrX_6892776_6892777;chrX_6892990_6892991 chrX_6892760_6892776;chrX_6892991_6894296 93.33 92.31 90.00 96.43 91.67 94.12 90.91 92.00 90.00 71.88 90.00 96.15 100.00 100.00 100.00 94.12 100.00 92.86 100.00 95.45 100.00 94.12 95.65 93.75 91.67 94.44 100.00 91.67 NA 61.54 95.65 87.50 83.33 95.65 90.48 93.75 88.89 90.00 93.75 84.00 91.67 97.44 94.44 91.67 92.86 94.12 88.89 96.43 92.31 90.00 93.33 93.33 81.82 NA 90.48 93.33 100.00 83.33 K jcn_only_AD CG33298 chr2L + chr2L_9495712_9503592;chr2L_9496256_9503592 chr2L_9495657_9503592 chr2L_9503593_9504813;chr2L_9495488_9495656 4.76 4.55 9.68 1.69 13.04 NA 2.04 4.05 3.33 NA 4.35 0.00 8.33 5.41 6.25 5.13 4.88 0.00 6.82 3.23 17.39 9.09 NA NA NA NA NA NA NA NA 0.00 NA NA 10.96 0.00 NA NA NA NA 4.76 NA 9.38 2.70 NA NA NA NA NA 4.48 NA NA NA NA NA 7.69 NA NA NA K alternative_acceptor foxo,I_chr3R_9907161_9907218 chr3R + chr3R_9906910_9907055 chr3R_9906910_9907028 chr3R_9906726_9906909;chr3R_9907056_9907153 61.54 64.29 NA 62.50 NA NA NA 55.56 57.89 45.45 NA 90.91 NA NA 63.64 NA NA 44.44 NA 59.26 NA 88.00 57.69 60.00 46.15 85.71 50.00 60.00 63.64 72.73 NA 53.85 68.75 61.54 55.56 90.91 65.38 57.89 39.13 68.75 NA 65.22 62.50 81.82 NA NA 66.67 50.00 66.67 69.23 66.67 NA 50.00 NA NA 46.15 60.00 50.00 K intron_retention Iswi chr2R + chr2R_8524243_8524316 chr2R_8524242_8524243;chr2R_8524316_8524317 chr2R_8524226_8524242;chr2R_8524317_8524495 100.00 NA NA 100.00 NA NA 100.00 87.50 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA Galpha49B,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500357_8501648;chr2R_8500357_8501759 chr2R_8500357_8501071 chr2R_8500333_8500356;chr2R_8501760_8501850 91.29 NA NA NA NA NA 80.00 86.21 91.67 NA NA 90.91 95.65 95.24 NA 85.19 NA NA NA 95.24 NA NA NA NA NA NA NA NA NA NA NA NA NA 95.45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 77.78 NA NA NA NA NA NA NA NA NA K intron_retention armi,I_chr3L_3466623_3467559 chr3L + chr3L_3461463_3461540 chr3L_3461462_3461463;chr3L_3461540_3461541 chr3L_3461357_3461462;chr3L_3461541_3461629 0.00 0.00 0.00 0.00 0.00 4.65 3.28 0.00 1.12 NA 0.00 0.00 2.56 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 3.23 9.68 4.17 6.67 0.00 0.00 NA 0.00 2.86 0.00 7.41 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 3.12 0.00 NA NA 0.00 NA NA 0.00 K jcn_only_AD MSBP,I_chrX_15783766_15784027,RI_chrX_15783766_15784064,I_chrX_15783766_15785978 chrX - chrX_15783766_15784064;chrX_15783766_15784027 chrX_15783766_15783941 chrX_15783666_15783765;chrX_15784065_15784071 98.55 100.00 99.50 98.96 97.60 99.32 98.59 98.35 98.15 98.89 98.75 98.97 98.80 98.54 97.46 97.44 97.73 96.53 98.27 97.86 99.10 96.45 98.73 98.82 97.54 98.72 98.80 100.00 98.04 97.42 99.53 95.87 91.76 99.24 100.00 100.00 98.34 98.25 98.31 99.12 97.22 96.74 95.12 99.64 99.15 98.05 98.91 97.28 97.92 98.00 98.55 99.30 98.86 99.45 98.21 97.24 99.55 100.00 K intron_retention CG16936,RI_chr2R_20655101_20655166,I_chr2R_20660319_20660496 chr2R - chr2R_20655101_20655620 chr2R_20655100_20655101;chr2R_20655620_20655621 chr2R_20655001_20655100;chr2R_20655621_20655665 2.82 1.54 0.00 9.52 2.33 2.00 0.00 1.67 2.96 1.89 2.86 2.73 2.04 0.00 4.17 0.00 6.90 NA 4.00 4.59 4.00 25.00 0.00 3.12 6.45 9.09 0.00 7.69 8.33 8.00 3.92 4.65 3.33 2.11 0.00 NA 2.25 0.00 2.78 0.00 5.13 2.26 0.00 2.15 4.11 9.52 3.28 6.52 2.84 4.94 2.38 0.00 2.82 0.00 0.00 4.11 0.85 8.08 K alternative_donor I_chr3L_3151185_3151263,CG32280 chr3L + chr3L_3165222_3167941;chr3L_3165255_3167941;chr3L_3165352_3167941;chr3L_3165390_3167941;chr3L_3165407_3167941 chr3L_3165704_3167941 chr3L_3167942_3168265;chr3L_3165212_3165221 33.33 NA NA 50.00 NA NA 33.33 NA 50.00 25.00 NA 33.33 NA NA NA 50.00 NA 50.00 NA NA NA 16.67 14.29 NA NA NA NA NA 25.00 NA NA NA 50.00 NA NA NA 14.29 NA NA 33.33 NA NA NA NA 33.33 33.33 33.33 50.00 50.00 14.29 25.00 NA NA NA NA NA 14.29 33.33 K cassette fry,I_chr3L_9636648_9656042 chr3L - chr3L_9636648_9656042 chr3L_9636648_9653741;chr3L_9653906_9656042 chr3L_9653742_9653905 chr3L_9636632_9636647;chr3L_9656043_9656142 99.01 100.00 100.00 100.00 100.00 97.92 98.36 98.86 100.00 100.00 97.67 100.00 97.30 100.00 98.46 98.77 100.00 100.00 100.00 99.08 100.00 96.30 98.84 98.63 97.87 100.00 95.95 96.67 97.78 98.70 97.73 100.00 96.92 100.00 98.08 97.22 100.00 100.00 99.01 96.97 96.43 99.16 100.00 100.00 96.67 97.78 100.00 100.00 98.92 100.00 98.95 100.00 97.14 100.00 100.00 95.65 100.00 97.83 K intron_retention CG6726,CG17110 chr3R + chr3R_18918270_18918322 chr3R_18918269_18918270;chr3R_18918322_18918323 chr3R_18917778_18918269;chr3R_18918323_18918740 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15765557_15765895 chrX_15765557_15765891 chrX_15765408_15765556;chrX_15765896_15766002 95.35 96.00 NA 88.00 NA NA 96.43 97.14 96.97 NA NA 96.43 100.00 NA NA 87.18 NA NA 100.00 91.30 NA NA NA NA NA NA NA NA NA NA NA NA NA 93.75 NA NA NA NA NA NA NA 93.55 NA NA NA NA NA NA 95.35 NA 91.30 NA NA NA 93.10 NA NA NA K intron_retention faf,RI_chr3R_27603474_27603893,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27611851_27611910 chr3R_27611850_27611851;chr3R_27611910_27611911 chr3R_27611739_27611850;chr3R_27611911_27612020 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CLIP-190,I_chr2L_17394493_17404060,I_chr2L_17401291_17404060,F_chr2L_17401582_17401681,I_chr2L_17401582_17402303 chr2L + chr2L_17401291_17404060;chr2L_17401291_17402374 chr2L_17401291_17401518;chr2L_17401582_17404060,chr2L_17401582_17402374 chr2L_17401519_17401581 chr2L_17401191_17401290;chr2L_17404061_17404076 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 91.67 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 93.33 100.00 92.31 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 K jcn_only_AA Vinc,I_chrX_2114558_2116113 chrX - chrX_2112129_2114405 chrX_2114316_2114405 chrX_2114406_2114557 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.88 0.00 0.43 0.00 0.73 0.00 0.00 0.00 0.59 0.00 0.00 1.15 0.00 0.85 0.00 0.00 0.50 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.91 1.34 0.00 0.00 0.00 0.54 0.77 0.00 0.68 0.00 0.00 0.68 0.00 0.00 K alternative_acceptor Start1,I_chr2R_20463661_20463716 chr2R + chr2R_20464631_20464698 chr2R_20464631_20464675 chr2R_20464089_20464630;chr2R_20464699_20464822 0.00 0.00 2.44 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 1.75 2.38 0.00 1.06 0.00 1.89 0.00 0.00 0.00 0.00 2.27 0.00 0.00 K intron_retention Vps35,RI_chr2R_18073600_18073666,I_chr2R_18073728_18074021,RI_chr2R_18074210_18074272 chr2R + chr2R_18073600_18074021 chr2R_18073599_18073600;chr2R_18074021_18074022 chr2R_18073511_18073599;chr2R_18074022_18074121 40.00 50.00 68.42 12.00 36.84 47.37 56.25 31.71 45.45 8.00 22.73 61.90 20.00 44.44 42.31 87.88 40.00 41.67 31.25 33.33 42.11 58.62 28.81 43.59 47.83 65.00 46.15 31.58 42.86 33.33 35.90 50.00 56.25 46.88 37.14 60.47 27.27 25.93 29.03 28.26 63.64 34.00 41.67 20.83 NA 55.00 41.94 40.00 34.00 30.00 40.00 41.67 45.16 32.00 33.33 37.50 35.48 33.33 K jcn_only_AA d4 chr2R + chr2R_1182569_1182634 chr2R_1182569_1182620 chr2R_1182302_1182568;chr2R_1182635_1183461 100.00 97.06 100.00 98.81 100.00 94.87 98.77 100.00 98.47 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 99.11 98.04 100.00 98.51 97.44 100.00 100.00 96.39 100.00 97.92 98.08 97.62 97.30 96.88 100.00 97.73 100.00 96.91 98.36 98.80 100.00 98.15 100.00 100.00 96.08 100.00 100.00 100.00 100.00 98.73 100.00 98.61 100.00 100.00 100.00 100.00 100.00 99.07 100.00 K alternative_donor CG32428 chr3L - chr3L_20463085_20464053 chr3L_20463085_20464027 chr3L_20462772_20463084;chr3L_20464054_20464246 92.11 96.77 96.30 97.22 94.74 95.65 100.00 94.74 97.62 78.95 94.12 97.22 94.12 95.00 96.67 92.11 94.74 96.00 96.43 98.63 100.00 91.67 91.43 88.57 100.00 90.91 85.29 84.00 88.89 82.61 85.71 73.91 81.08 90.00 89.47 100.00 93.75 90.32 94.29 91.49 83.33 86.36 93.75 77.42 84.00 89.29 95.83 84.00 100.00 74.07 85.71 100.00 95.65 83.33 87.10 93.33 91.18 82.86 K intron_retention ssp4,I_chr2R_13409412_13411328,I_chr2R_13409412_13411588,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13411404_13411588 chr2R_13411403_13411404;chr2R_13411588_13411589 chr2R_13411393_13411403;chr2R_13411589_13411688 12.00 11.63 15.15 4.88 15.62 12.00 52.78 16.92 18.99 NA 11.11 17.24 13.33 13.51 12.77 18.46 12.20 20.45 11.43 12.66 18.92 NA 6.90 8.33 16.67 5.41 19.44 27.78 8.70 10.26 18.42 0.00 10.34 20.00 12.50 5.26 8.62 8.89 7.27 18.18 0.00 11.39 20.00 6.82 0.00 7.32 2.94 20.00 18.64 13.95 7.55 14.29 0.00 4.35 16.00 5.71 4.65 5.26 K alternative_donor CG2064 chr2R + chr2R_3553522_3553650 chr2R_3553532_3553650 chr2R_3553651_3553914;chr2R_3553444_3553521 0.37 0.63 0.00 0.99 0.00 0.00 0.38 0.37 0.00 0.00 1.47 0.31 0.00 0.00 0.00 0.81 0.00 0.85 0.00 0.27 0.90 0.36 0.31 1.18 0.00 0.00 0.40 0.00 0.41 1.35 0.42 0.66 0.00 0.77 0.60 0.00 0.00 0.58 0.49 0.45 0.00 0.34 1.00 0.31 0.64 0.81 0.00 0.00 0.33 0.00 1.44 1.54 0.72 0.59 0.57 0.45 0.31 0.56 K intron_retention CG6509 chr2L - chr2L_11510851_11511178 chr2L_11510850_11510851;chr2L_11511178_11511179 chr2L_11510596_11510850;chr2L_11511179_11511544 0.00 0.00 0.00 2.47 0.00 0.00 0.00 1.18 0.83 0.00 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 1.89 1.50 0.00 0.00 0.00 0.00 2.70 8.45 2.17 0.00 0.00 4.41 0.00 1.85 2.38 1.45 2.33 0.00 5.10 0.00 0.00 0.00 1.04 6.67 0.00 0.00 4.35 2.17 1.18 2.41 2.08 0.00 1.82 0.00 0.00 0.00 2.00 K intron_retention CG17002 chr2R + chr2R_2874439_2875285 chr2R_2874438_2874439;chr2R_2875285_2875286 chr2R_2874339_2874438;chr2R_2875286_2875770 13.64 12.77 16.13 12.00 16.13 22.73 14.81 16.00 17.31 0.00 50.00 17.39 47.06 7.69 15.38 22.22 18.52 16.67 10.53 20.83 48.15 17.54 13.46 14.93 11.54 19.23 18.37 18.18 14.06 8.51 16.13 13.64 7.69 13.64 6.90 12.20 10.53 15.91 12.00 6.45 10.00 15.69 14.29 13.51 4.65 8.82 12.24 4.35 16.67 7.94 19.15 10.34 9.80 11.63 7.89 13.33 13.70 1.96 K intron_retention CG12379 chrX - chrX_15627587_15627743 chrX_15627586_15627587;chrX_15627743_15627744 chrX_15627248_15627586;chrX_15627744_15628176 6.67 NA NA 25.00 NA NA 0.00 NA 4.35 NA NA 4.00 NA NA NA NA NA NA NA 6.67 NA NA 8.33 16.67 NA NA 10.53 0.00 NA 0.00 0.00 NA 15.00 0.00 NA NA 22.73 9.09 12.50 11.11 NA 0.00 NA 26.32 0.00 NA 10.00 NA 0.00 5.00 0.00 NA 7.69 NA 0.00 16.67 5.88 6.67 N jcn_only_AD scro chr3LHet + chr3LHet_223864_224236;chr3LHet_211841_224236 chr3LHet_217520_224236 chr3LHet_224237_224245 6.44 NA NA 4.55 NA NA NA 8.33 NA NA NA NA NA NA NA 13.04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.23 NA NA NA NA NA NA NA NA NA K intron_retention CG1358,I_chr2R_3485171_3489936 chr2R - chr2R_3484334_3484454 chr2R_3484333_3484334;chr2R_3484454_3484455 chr2R_3483240_3484333;chr2R_3484455_3484565 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 1.77 0.00 0.00 0.00 0.00 1.94 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.50 0.00 1.91 0.00 0.00 0.00 0.53 0.00 0.00 1.94 0.00 1.18 0.00 0.00 0.00 1.75 0.00 0.71 0.00 K alternative_last_exon CG3774,I_chrX_6114220_6114292 chrX + chrX_6114451_6115412 chrX_6114451_6114510 chrX_6115413_6116869 chrX_6114511_6114605 chrX_6114348_6114450 0.00 1.64 0.00 0.00 0.00 0.00 0.00 1.05 0.73 2.38 0.00 0.98 2.86 0.00 1.52 1.33 0.00 0.00 0.00 1.44 1.92 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 1.16 2.13 0.00 0.00 0.00 0.00 1.09 4.88 0.85 0.00 0.00 0.00 1.37 1.59 0.00 0.97 2.00 1.20 0.00 0.00 1.54 0.00 3.12 2.63 1.64 K intron_retention lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22816821_22817713 chr2L_22816820_22816821;chr2L_22817713_22817714 chr2L_22816455_22816820;chr2L_22817714_22817839 50.00 NA NA NA NA NA 53.33 46.15 63.64 NA NA 50.00 NA NA NA 53.33 NA NA NA 52.63 NA 38.46 60.00 60.00 NA NA 40.00 66.67 NA NA 50.00 NA NA 43.75 NA NA 50.00 NA 50.00 33.33 NA 73.33 NA NA NA NA NA NA 66.67 NA 26.67 NA NA NA NA NA 46.15 NA N alternative_donor hang,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16323441_16324653 chrX_16324290_16324653 chrX_16324654_16324797;chrX_16323093_16323440 20.55 20.55 11.54 20.72 14.29 15.09 18.42 8.53 19.88 28.07 10.20 19.84 19.40 18.46 24.10 23.85 16.98 13.89 16.25 22.40 11.11 53.55 20.00 23.40 25.00 13.64 18.42 20.55 37.36 25.47 13.04 26.19 33.58 14.38 25.86 32.22 28.77 22.22 23.81 23.53 12.50 19.38 15.38 28.68 34.15 20.37 20.83 34.78 16.42 20.00 18.32 25.00 20.83 20.00 15.66 21.21 21.88 37.14 K alternative_donor CG3321,RI_chr3R_10154615_10155360 chr3R + chr3R_10152850_10152974;chr3R_10152906_10152974;chr3R_10152911_10152974 chr3R_10152811_10152974 chr3R_10152975_10153473;chr3R_10152803_10152810 0.00 1.69 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 1.37 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Lasp,RI_chr3L_16674471_16704042 chr3L - chr3L_16671459_16671524 chr3L_16671458_16671459;chr3L_16671524_16671525 chr3L_16669555_16671458;chr3L_16671525_16671760 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.17 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG18624,RI_chrX_7787450_7787620,RI_chrX_7787450_7787687,RI_chrX_7787524_7787687 chrX - chrX_7787450_7787782 chrX_7787450_7787620 chrX_7787424_7787449;chrX_7787783_7787787 76.47 85.71 42.86 92.86 NA NA 80.00 50.00 55.00 NA NA 58.82 50.00 62.50 83.33 76.47 NA NA 75.00 36.36 80.00 NA 80.00 NA NA 83.33 80.00 NA NA NA 80.00 NA NA 63.64 NA NA 80.00 NA NA 80.00 NA 75.00 NA NA NA 100.00 NA NA 75.00 NA NA NA NA NA 42.86 NA 85.71 50.00 K alternative_donor RpL3,I_chr3R_7047694_7047896,I_chr3R_7047774_7047896,E_chr3R_7047964_7050565,I_chr3R_7049970_7050189 chr3R + chr3R_7047774_7047896;chr3R_7047655_7047896 chr3R_7047694_7047896 chr3R_7047897_7047963;chr3R_7047619_7047654 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.08 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 K intron_retention Khc-73 chr2R - chr2R_11406337_11406398 chr2R_11406336_11406337;chr2R_11406398_11406399 chr2R_11405578_11406336;chr2R_11406399_11406710 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 7.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Uhg5,noncoding_6835,RE_chr2R_10511425_10511467,snoRNA:Me28S-G2703c chr2R + chr2R_10511484_10511661 chr2R_10511483_10511484;chr2R_10511661_10511662 chr2R_10511468_10511483;chr2R_10511662_10511725 0.00 NA NA 0.00 NA NA 0.00 11.76 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 9.09 0.00 NA NA NA NA NA 0.00 0.00 NA K intron_retention CTCF,I_chr3L_7352698_7352777 chr3L - chr3L_7349560_7349680 chr3L_7349559_7349560;chr3L_7349680_7349681 chr3L_7349167_7349559;chr3L_7349681_7349793 25.00 NA 14.29 33.33 41.67 25.00 33.33 24.00 26.67 NA NA 24.14 NA NA 13.33 20.83 NA NA 18.75 23.08 NA NA 41.67 33.33 62.50 53.33 26.32 33.33 41.67 NA 28.57 NA NA 28.57 9.52 58.82 43.75 43.75 25.00 23.53 58.33 36.36 NA 36.84 NA 17.65 13.33 17.65 16.67 21.43 30.00 15.00 14.29 NA 14.29 15.79 15.38 25.00 K jcn_only_AA mnb chrX - chrX_17762403_17763014;chrX_17762203_17763014 chrX_17762200_17763014 chrX_17763015_17763849;chrX_17762180_17762199 10.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Atu chr3R + chr3R_1439212_1439281 chr3R_1439215_1439281 chr3R_1439282_1439345;chr3R_1439150_1439211 100.00 98.00 100.00 100.00 100.00 96.67 100.00 100.00 98.82 100.00 NA 100.00 96.43 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 99.16 98.73 100.00 100.00 100.00 100.00 100.00 100.00 98.21 100.00 98.31 100.00 100.00 98.65 98.96 100.00 100.00 100.00 100.00 98.82 NA 98.82 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG4165,I_chrX_5317784_5317881,I_chrX_5321743_5321838 chrX + chrX_5316160_5316612;chrX_5316313_5316612;chrX_5316300_5316612 chrX_5315965_5316612 chrX_5316613_5317050;chrX_5315939_5315964 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 10.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.11 NA 0.00 0.00 0.00 16.67 K intron_retention Hel25E chr2L - chr2L_5541657_5541722 chr2L_5541656_5541657;chr2L_5541722_5541723 chr2L_5541433_5541656;chr2L_5541723_5541969 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.35 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.70 0.00 2.58 0.32 0.40 0.00 0.00 0.51 0.78 4.04 0.27 0.00 1.09 0.00 0.00 0.00 0.57 0.00 0.00 0.35 0.50 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.34 0.24 0.00 0.00 K intron_retention Akap200,I_chr2L_8426446_8426873 chr2L + chr2L_8428068_8428319 chr2L_8428067_8428068;chr2L_8428319_8428320 chr2L_8427615_8428067;chr2L_8428320_8428325 19.71 20.43 20.00 57.64 17.24 16.48 32.66 23.62 26.56 10.38 18.91 17.71 17.76 23.20 17.23 21.90 26.21 19.50 22.88 28.35 18.58 19.80 19.81 18.11 22.32 15.23 20.41 32.04 13.46 19.90 21.58 39.77 19.30 22.84 17.77 21.77 18.42 14.76 15.03 13.61 19.71 21.04 26.32 23.56 9.09 18.08 17.37 26.99 23.77 15.24 16.45 16.82 14.51 15.77 21.15 16.25 17.20 23.79 K intron_retention CG12946,I_chr3R_5599701_5600032,I_chr3R_5609682_5609889 chr3R - chr3R_5597860_5597917 chr3R_5597859_5597860;chr3R_5597917_5597918 chr3R_5597618_5597859;chr3R_5597918_5598860 25.00 30.77 NA NA 15.38 NA NA 22.22 40.00 NA NA 35.71 35.71 42.86 18.75 31.25 53.85 NA 25.00 9.68 14.29 NA 10.53 26.67 NA NA NA NA NA 25.00 28.57 NA NA 30.77 20.00 NA 40.00 NA 11.76 14.29 NA 20.83 NA NA NA NA NA NA 30.00 5.56 20.00 NA NA NA 28.57 NA NA NA K alternative_donor hppy,I_chr2R_15066378_15066915,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15066304_15067003;chr2R_15066378_15067003;chr2R_15066358_15067003 chr2R_15066243_15067003 chr2R_15067004_15067015;chr2R_15066237_15066242 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention I_chr3R_27619193_27619598,CG42233,CG11576,ferrochelatase chr3R - chr3R_27629762_27629818 chr3R_27629761_27629762;chr3R_27629818_27629819 chr3R_27629487_27629761;chr3R_27629819_27630083 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG9063 chr3L - chr3L_22255797_22255857 chr3L_22255796_22255797;chr3L_22255857_22255858 chr3L_22253724_22255796;chr3L_22255858_22256037 40.84 NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA 40.00 NA NA NA 45.45 53.33 50.00 NA NA NA 23.08 NA NA 25.00 NA NA NA 25.00 NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG40042 chr2LHet - chr2LHet_168404_168462 chr2LHet_168403_168404;chr2LHet_168462_168463 chr2LHet_168234_168403;chr2LHet_168463_168745 0.89 0.44 0.00 2.10 0.47 0.00 0.91 1.58 0.89 0.00 0.00 0.95 0.00 0.72 0.00 0.56 0.79 1.47 0.57 0.71 0.00 2.56 1.79 0.33 3.05 2.15 2.34 2.45 4.20 1.69 2.43 0.00 0.00 1.07 0.00 4.70 0.00 1.08 0.00 1.00 3.24 1.14 0.82 0.78 1.56 1.10 1.07 1.15 0.77 0.89 1.31 0.54 0.57 1.33 0.77 0.90 0.48 1.11 K alternative_donor ATPsyn-d chr3R + chr3R_14920744_14921118 chr3R_14920797_14921118 chr3R_14921119_14921792;chr3R_14920714_14920743 73.08 77.50 68.85 81.03 71.70 63.04 78.33 61.97 72.44 72.73 69.64 66.94 77.78 82.05 70.79 68.92 75.81 65.31 74.07 67.89 64.06 88.89 71.43 73.58 80.56 77.59 73.08 63.16 82.86 77.78 69.35 70.59 78.57 75.90 76.92 92.86 80.68 64.58 64.15 56.41 78.05 63.76 72.73 72.73 69.44 81.63 82.22 82.00 66.33 88.64 66.67 87.18 62.22 86.67 70.59 74.47 78.75 75.25 K alternative_last_exon spi,I_chr2L_19569183_19577185,I_chr2L_19569227_19572142,I_chr2L_19569227_19577173 chr2L - chr2L_19569227_19577173 chr2L_19571768_19577173 chr2L_19567812_19569226 chr2L_19571572_19571767 chr2L_19577174_19577273 44.44 53.85 60.00 25.00 20.00 28.57 64.29 75.00 36.36 0.00 54.55 39.39 33.33 50.00 35.29 81.82 44.44 50.00 63.64 44.83 75.00 0.00 64.71 61.11 33.33 35.71 68.75 40.00 16.67 66.67 44.44 44.44 60.00 57.14 66.67 46.15 9.52 44.44 31.25 33.33 42.86 33.33 63.64 66.67 50.00 73.68 36.84 40.00 23.08 36.36 53.85 21.43 8.70 50.00 33.33 50.00 46.15 50.00 K intron_retention RI_chr2L_1170364_1170429,CG4887,REI_chr2L_1179197_1179859 chr2L + chr2L_1176044_1176100 chr2L_1176043_1176044;chr2L_1176100_1176101 chr2L_1175579_1176043;chr2L_1176101_1176881 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8461584_8461646 chr3L_8461584_8461643 chr3L_8461439_8461583;chr3L_8461647_8461804 72.88 84.00 63.64 68.97 NA 75.00 NA 80.00 71.19 NA NA 72.09 NA 75.00 82.14 NA NA 65.00 81.82 69.57 NA 76.67 70.21 80.65 75.00 NA NA NA 68.29 78.95 NA 79.41 68.18 70.73 85.71 73.81 60.00 68.97 64.15 75.00 NA 72.88 NA 63.89 75.68 79.41 NA 83.64 70.27 NA 71.43 60.00 NA NA 64.00 NA NA 81.40 K jcn_only_AA bur,I_chr2L_21175961_21176006,I_chr2L_21177679_21178250,I_chr2L_21177960_21179329 chr2L - chr2L_21175934_21176006 chr2L_21175961_21176006 chr2L_21176007_21176106;chr2L_21175861_21175933 0.00 0.76 0.47 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.61 0.00 0.00 0.39 0.70 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.85 0.00 0.00 0.00 0.00 0.32 0.00 0.30 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.47 0.00 0.00 0.70 K alternative_donor Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8443579_8444874 chr3L_8443581_8444874 chr3L_8444875_8444926;chr3L_8443512_8443578 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Dystrophin,noncoding_17759,I_chr3R_15289404_15290179 chr3R + chr3R_15289362_15290221;chr3R_15289404_15290221 chr3R_15289437_15290221 chr3R_15290222_15290279;chr3R_15289350_15289361 23.91 NA NA NA NA NA NA 26.09 NA NA NA 21.74 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 21.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.43 NA NA NA NA NA NA NA NA NA K cassette Lasp,I_chr3L_16671761_16673911,I_chr3L_16671780_16671907,R_chr3L_16672970_16673911,RI_chr3L_16674471_16704042 chr3L - chr3L_16671761_16673911 chr3L_16671761_16671907;chr3L_16672970_16673911 chr3L_16671908_16672969 chr3L_16671680_16671760;chr3L_16673912_16674011 99.52 99.68 99.23 99.73 99.56 99.11 99.73 99.17 99.36 100.00 99.58 99.79 100.00 99.42 99.23 99.58 99.47 98.18 99.52 99.62 100.00 94.69 99.52 99.54 99.71 98.33 99.13 100.00 99.82 98.70 99.50 99.62 99.20 99.74 98.73 99.73 99.54 99.57 99.07 98.97 98.35 99.81 99.38 98.90 98.28 99.68 99.37 99.00 99.78 99.67 99.19 100.00 99.68 100.00 100.00 98.90 99.34 98.43 K alternative_acceptor Asph,C_chr2R_12000224_12000293,I_chr2R_12002559_12002858,I_chr2R_12003264_12003325 chr2R + chr2R_11999647_11999706 chr2R_11999647_11999700 chr2R_11999488_11999646;chr2R_11999707_12000035 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG3493 chr2R - chr2R_19259384_19259445 chr2R_19259383_19259384;chr2R_19259445_19259446 chr2R_19258869_19259383;chr2R_19259446_19259562 3.45 0.00 0.00 12.70 0.00 0.00 13.95 0.00 5.38 0.00 8.33 3.39 0.00 3.85 0.00 5.00 3.45 0.00 6.67 3.61 0.00 4.76 5.38 4.17 4.35 29.17 7.84 6.49 16.00 0.00 0.00 4.35 3.45 3.57 0.00 0.00 5.71 0.00 3.03 4.76 11.11 1.32 0.00 0.00 4.76 0.00 0.00 4.17 3.85 5.45 5.41 0.00 4.08 2.44 0.00 1.72 0.00 3.85 K cassette trol,I_chrX_2387249_2389980,I_chrX_2391522_2395659 chrX - chrX_2370063_2374766 chrX_2370063_2372455;chrX_2372540_2374766 chrX_2372456_2372539 chrX_2369857_2370062;chrX_2374767_2374941 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N multi_cassette CG42345,I_chr2R_1311745_1327074 chr2R + chr2R_1327260_1334039 chr2R_1327260_1328114;chr2R_1328311_1328362;chr2R_1328576_1334039 chr2R_1328115_1328310;chr2R_1328363_1328575 chr2R_1327075_1327259;chr2R_1334040_1334270 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 43.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette CG42270,I_chrX_17615384_17615455,I_chrX_17639729_17640603 chrX + chrX_17615649_17640603 chrX_17615649_17630230;chrX_17630303_17640603 chrX_17630231_17630302 chrX_17615456_17615648;chrX_17640604_17640703 2.04 1.35 1.47 4.05 3.39 1.19 2.88 2.22 1.45 1.12 2.04 0.82 2.78 1.82 2.67 2.00 1.75 1.54 1.39 2.26 1.82 4.17 0.87 1.63 3.19 1.49 6.02 20.48 12.23 2.56 3.12 1.54 3.14 2.11 3.95 6.67 0.76 1.15 0.85 1.76 2.38 2.63 1.72 1.69 2.60 4.17 1.54 0.96 3.20 0.97 1.44 3.03 0.00 2.50 3.30 1.54 2.44 3.70 K jcn_only_AA Dcp2,F_chr3L_15815909_15816023,F_chr3L_15817090_15817547 chr3L - chr3L_15815112_15815170 chr3L_15815115_15815170 chr3L_15815171_15815908;chr3L_15814221_15815111 22.73 28.70 18.32 27.03 29.41 25.25 20.47 20.23 21.88 27.27 25.56 23.14 20.88 23.30 21.88 24.84 22.73 20.59 17.70 25.66 22.22 25.21 27.78 18.85 28.70 18.26 20.28 24.72 20.59 28.99 15.84 25.93 35.14 17.76 32.18 22.88 17.69 28.72 21.90 16.96 19.23 21.82 19.10 18.00 31.25 23.64 20.73 27.91 18.33 20.75 25.68 22.22 23.08 18.00 23.62 15.00 25.49 29.63 K intron_retention penguin chrX - chrX_21217777_21217983 chrX_21217776_21217777;chrX_21217983_21217984 chrX_21217508_21217776;chrX_21217984_21218459 7.41 6.57 10.26 13.38 8.51 8.73 8.97 10.37 7.41 4.76 6.48 10.26 11.34 12.37 6.67 12.23 11.63 8.27 11.71 7.09 5.31 10.00 5.58 5.67 7.91 12.50 9.44 5.45 3.76 3.43 13.89 6.98 4.24 9.21 8.81 9.03 3.17 5.80 5.38 5.31 6.40 7.17 8.74 3.70 5.93 12.50 5.62 7.10 9.62 5.28 7.80 8.66 4.43 7.66 7.38 8.07 2.39 4.97 K intron_retention CG3194,CG17266 chr2R - chr2R_2557840_2558366 chr2R_2557839_2557840;chr2R_2558366_2558367 chr2R_2557667_2557839;chr2R_2558367_2558896 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 93.33 100.00 K alternative_acceptor CG6425 chr3R - chr3R_22542850_22542919 chr3R_22542861_22542919 chr3R_22542920_22542946;chr3R_22541838_22542849 95.83 100.00 100.00 94.44 100.00 92.31 90.91 94.44 95.24 NA 90.00 88.24 100.00 90.00 93.33 100.00 100.00 93.33 100.00 94.74 100.00 91.67 100.00 100.00 100.00 100.00 92.31 100.00 90.91 100.00 90.00 NA 100.00 100.00 100.00 100.00 93.75 90.00 100.00 88.24 NA 94.44 90.00 100.00 NA 100.00 92.86 NA 95.83 94.44 93.33 100.00 100.00 92.86 92.31 100.00 100.00 NA K intron_retention CG6608,I_chr3R_6706829_6707624 chr3R - chr3R_6707526_6707624 chr3R_6707525_6707526;chr3R_6707624_6707625 chr3R_6707285_6707525;chr3R_6707625_6707724 59.38 43.59 57.14 64.10 53.57 59.38 82.61 61.76 50.70 44.83 57.69 62.71 56.00 78.26 65.71 73.33 50.00 57.50 54.84 62.12 77.42 55.00 56.10 50.00 81.40 74.29 64.62 53.23 90.74 46.43 69.44 55.56 64.79 65.79 58.33 74.00 50.00 53.57 61.19 60.00 64.10 58.46 65.00 62.75 40.54 56.52 58.33 63.83 64.10 60.71 57.69 65.22 47.83 53.12 63.04 53.49 64.29 30.00 K alternative_donor abo chr2L - chr2L_10974211_10974271 chr2L_10974211_10974267 chr2L_10973448_10974210;chr2L_10974272_10975309 96.30 72.73 80.00 94.44 91.67 90.00 94.74 100.00 96.30 NA NA 94.74 90.91 90.00 100.00 85.71 100.00 NA 92.31 84.62 NA 100.00 92.31 100.00 NA 100.00 100.00 NA NA 100.00 80.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 95.24 88.89 90.91 91.67 100.00 100.00 NA 86.67 100.00 NA NA NA NA 100.00 NA 100.00 92.31 K intron_retention omd chr3R - chr3R_9507452_9507508 chr3R_9507451_9507452;chr3R_9507508_9507509 chr3R_9507187_9507451;chr3R_9507509_9507853 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 5.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 K intron_retention Pak,RI_chr3R_2181143_2181934 chr3R + chr3R_2176677_2180635 chr3R_2176676_2176677;chr3R_2180635_2180636 chr3R_2176656_2176676;chr3R_2180636_2180902 37.50 35.71 44.44 31.03 33.33 43.33 60.00 55.56 30.19 28.57 11.11 39.02 30.77 56.25 38.10 47.37 43.75 45.00 37.50 28.57 40.00 70.00 20.00 33.33 38.46 50.00 NA NA NA NA 22.22 NA 25.00 43.24 NA NA 23.81 25.00 NA 30.43 NA 36.07 46.15 NA 20.00 NA NA 41.18 32.61 NA 50.00 40.00 NA NA 50.00 NA 20.00 33.33 K intron_retention CG3321,RI_chr3R_10154615_10155360 chr3R + chr3R_10152850_10152974 chr3R_10152849_10152850;chr3R_10152974_10152975 chr3R_10152803_10152849;chr3R_10152975_10153473 1.27 1.69 1.97 3.72 2.70 1.27 6.42 2.72 1.15 0.00 3.21 2.86 1.19 0.00 2.86 2.51 1.14 1.96 1.06 1.50 2.16 0.00 0.00 0.00 0.00 2.78 6.67 8.33 9.26 0.00 2.73 0.00 1.19 1.70 0.00 3.70 1.23 0.00 0.00 2.86 12.20 1.22 2.53 0.00 1.04 0.00 0.00 6.15 2.43 1.94 0.00 0.00 2.22 0.00 1.21 0.00 0.70 5.83 K intron_retention RpS4,Syx13,RI_chr3L_13037959_13038017,CG11279 chr3L + chr3L_13034938_13035081 chr3L_13034937_13034938;chr3L_13035081_13035082 chr3L_13034878_13034937;chr3L_13035082_13035114 16.03 12.82 15.00 20.00 5.00 16.67 10.53 6.67 15.38 29.41 17.65 13.16 5.88 16.67 4.76 5.56 9.52 NA 4.76 30.00 11.76 25.00 25.93 14.29 12.50 22.22 17.65 30.00 57.14 26.32 28.57 31.58 41.67 21.43 13.79 33.33 6.90 7.69 9.30 32.43 56.25 9.62 5.88 30.77 38.89 33.33 15.38 63.16 12.50 11.43 19.23 16.67 10.00 14.29 8.33 18.52 8.33 50.00 K alternative_acceptor CG5938,EI_chr3R_23100734_23100898,RI_chr3R_23101686_23102014 chr3R + chr3R_23100734_23101112 chr3R_23100734_23100898 chr3R_23100634_23100733;chr3R_23101113_23101275 9.68 12.82 7.50 5.00 10.34 3.45 4.62 5.41 6.94 20.00 8.33 9.80 8.82 5.71 7.69 5.45 6.45 4.44 9.52 10.29 6.67 27.50 5.26 10.42 8.33 10.53 10.00 13.16 8.89 21.43 8.33 9.68 16.67 7.25 16.13 11.43 11.63 7.41 6.90 13.04 15.38 8.86 9.68 10.81 17.65 11.54 11.90 16.67 6.94 10.53 9.26 11.54 10.00 4.35 5.36 8.00 11.11 19.35 K intron_retention Aldolase,I_chr3R_22083764_22086684,I_chr3R_22086804_22086875 chr3R - chr3R_22083764_22084708 chr3R_22083763_22083764;chr3R_22084708_22084709 chr3R_22083664_22083763;chr3R_22084709_22084763 26.80 25.00 25.00 29.17 45.45 36.36 60.61 22.22 40.00 33.33 25.00 26.32 NA NA 15.38 40.00 36.36 36.36 28.57 33.33 46.15 35.00 25.00 15.79 41.67 20.00 29.63 44.44 25.00 20.00 31.25 NA 25.00 27.27 NA 22.22 21.43 20.00 NA 45.83 33.33 21.74 NA 28.57 14.29 20.00 NA 19.05 40.91 18.18 15.00 25.00 NA NA NA 36.36 25.00 NA K intron_retention CG4360 chr3R - chr3R_16151951_16152037 chr3R_16151950_16151951;chr3R_16152037_16152038 chr3R_16150089_16151950;chr3R_16152038_16152520 57.58 55.10 62.50 45.68 70.73 74.19 57.83 66.10 56.52 58.54 64.29 60.76 63.33 60.00 74.29 60.98 57.58 55.56 65.00 63.96 80.65 68.04 51.89 45.83 41.86 51.85 63.64 58.21 80.41 55.10 71.88 62.79 41.57 56.25 66.67 29.41 46.81 47.37 53.54 46.53 46.81 62.26 65.71 52.17 55.41 60.87 62.22 69.88 56.86 56.72 55.13 43.18 54.35 57.14 66.67 54.05 43.55 52.63 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2395659 chrX_2388671_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2393243;chrX_2393712_2394269;chrX_2394396_2395151;chrX_2395275_2395659 chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664;chrX_2393244_2393711;chrX_2394270_2394395;chrX_2395152_2395274 chrX_2388641_2388670;chrX_2395660_2395759 25.00 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor Ucp4A chrX + chrX_17739458_17739522;chrX_17739394_17739522;chrX_17739454_17739522 chrX_17739432_17739522 chrX_17739523_17739558;chrX_17739094_17739393 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA N multi_cassette Caki chr3R - chr3R_17613003_17615170 chr3R_17613003_17613507;chr3R_17613631_17613704;chr3R_17613825_17614595;chr3R_17614650_17615170 chr3R_17613508_17613630;chr3R_17613705_17613824;chr3R_17614596_17614649 chr3R_17612895_17613002;chr3R_17615171_17615309 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG4287,CG32856,mor chr3R - chr3R_11789264_11789320 chr3R_11789268_11789320 chr3R_11789321_11789576;chr3R_11787906_11789263 95.48 91.80 94.92 93.75 92.31 88.57 93.51 94.03 93.14 96.88 97.14 95.40 93.10 100.00 90.91 100.00 95.00 96.55 95.56 97.73 96.88 100.00 97.06 98.21 97.30 97.14 90.24 100.00 88.46 100.00 94.83 96.77 100.00 95.77 96.43 91.43 90.00 94.87 94.55 100.00 NA 93.59 96.00 88.37 91.67 96.55 100.00 NA 94.62 89.19 100.00 97.44 100.00 100.00 94.74 91.43 91.30 NA K intron_retention CG30349,lin chr2R + chr2R_4796917_4797991 chr2R_4796916_4796917;chr2R_4797991_4797992 chr2R_4796767_4796916;chr2R_4797992_4798089 0.00 0.00 0.00 0.72 0.00 0.00 1.68 0.00 1.02 0.00 0.00 0.00 0.00 2.27 0.00 1.80 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 2.53 1.72 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 1.11 1.35 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 K alternative_acceptor CG17271,I_chr3R_16645217_16645392,RI_chr3R_16647104_16647149 chr3R - chr3R_16645217_16646371 chr3R_16646166_16646371 chr3R_16646372_16646520;chr3R_16645117_16645216 100.00 100.00 100.00 87.50 100.00 83.33 100.00 100.00 90.91 100.00 100.00 100.00 100.00 75.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 78.57 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 80.00 100.00 100.00 100.00 100.00 80.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 85.71 100.00 100.00 100.00 100.00 100.00 K intron_retention CE_chrX_19156179_19164138,CG8010,CG32536 chrX - chrX_19162074_19162537 chrX_19162073_19162074;chrX_19162537_19162538 chrX_19161351_19162073;chrX_19162538_19162631 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 6.67 5.26 0.00 10.53 0.00 5.00 0.00 0.00 2.38 2.90 0.00 0.00 1.89 0.00 0.00 2.27 6.90 0.00 0.00 0.00 0.00 7.41 2.78 0.00 0.00 0.00 0.00 2.99 0.00 0.00 0.00 0.00 0.00 0.00 4.17 5.17 3.92 0.00 0.00 0.00 2.94 2.13 2.08 2.08 K intron_retention CG5325,Mt2,I_chr2L_12099367_12099435 chr2L + chr2L_12093911_12093993 chr2L_12093910_12093911;chr2L_12093993_12093994 chr2L_12093788_12093910;chr2L_12093994_12094111 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 7.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD RpL27,I_chr3R_21510239_21510298,RI_chr3R_21510239_21510441,I_chr3R_21510239_21510464,I_chr3R_21510239_21510656,I_chr3R_21510239_21510726 chr3R - chr3R_21510239_21510464;chr3R_21510239_21510656;chr3R_21510239_21510739;chr3R_21510239_21510680;chr3R_21510239_21510746 chr3R_21510239_21510298 chr3R_21510139_21510238;chr3R_21510747_21510756 2.22 6.90 1.67 1.20 4.08 2.08 9.26 0.81 7.87 7.27 2.08 0.00 7.14 4.17 0.96 2.44 2.13 2.22 0.00 4.21 0.00 11.25 6.52 4.35 4.88 1.27 0.00 2.94 10.94 3.70 1.90 2.99 1.05 1.83 3.33 2.86 4.23 11.11 5.36 1.80 0.00 0.94 0.00 1.59 3.11 1.41 2.00 2.15 1.89 9.09 23.08 11.63 1.83 0.00 1.42 5.77 9.00 1.64 K alternative_donor CG8311 chr2R - chr2R_12475017_12475116 chr2R_12475017_12475108 chr2R_12474550_12475016;chr2R_12475117_12475760 100.00 97.30 94.29 97.56 96.77 96.30 97.73 97.73 100.00 100.00 100.00 98.63 96.15 96.00 97.30 96.67 100.00 100.00 100.00 98.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 95.24 97.62 97.22 95.31 100.00 100.00 98.25 100.00 100.00 100.00 96.30 100.00 92.86 98.33 100.00 95.24 96.00 95.00 100.00 100.00 100.00 97.06 100.00 K cassette l(1)G0156 chrX - chrX_19414861_19415705 chrX_19414861_19415360;chrX_19415430_19415705 chrX_19415361_19415429 chrX_19414693_19414860;chrX_19415706_19415867 3.95 5.06 2.74 5.56 1.92 2.63 1.22 3.19 2.94 3.57 3.92 3.12 4.44 5.08 1.19 7.46 1.69 2.04 1.41 4.67 4.08 0.99 4.12 3.39 2.94 3.23 3.03 3.28 3.92 2.50 2.63 7.27 10.45 6.52 8.57 12.16 4.08 6.35 6.67 3.83 7.69 3.97 2.17 2.36 6.38 8.79 3.95 5.26 3.70 5.26 5.32 2.38 5.06 5.88 5.41 2.27 5.48 4.50 K jcn_only_AD RpL32,I_chr3R_25871509_25871807 chr3R - chr3R_25871509_25871771;chr3R_25871509_25871611;chr3R_25871509_25871583;chr3R_25871509_25871855 chr3R_25871509_25871851 chr3R_25871409_25871508;chr3R_25871856_25871862 2.83 2.10 2.73 2.84 2.59 2.44 2.44 2.13 2.43 4.67 3.15 2.37 1.83 1.41 1.83 1.78 1.94 2.43 2.05 2.42 2.92 4.53 4.13 3.17 3.65 2.43 3.61 3.59 6.04 7.45 2.49 3.94 7.51 2.73 5.99 5.13 2.44 3.02 2.40 2.96 5.86 2.30 2.83 4.39 4.29 6.53 2.92 6.81 1.70 2.64 2.65 4.35 2.35 3.18 2.33 4.09 2.46 6.65 N alternative_acceptor Droj2,RI_chr3R_9207981_9208471,RI_chr3R_9208529_9209185 chr3R + chr3R_9207981_9209185;chr3R_9207981_9208471 chr3R_9207981_9209956 chr3R_9207926_9207980;chr3R_9209957_9210301 0.85 0.00 0.00 9.84 0.00 0.00 1.45 3.51 1.07 0.00 0.00 1.44 1.77 1.70 0.00 0.91 0.00 0.00 1.37 0.00 0.00 1.32 0.85 0.00 2.20 3.92 1.87 1.85 0.90 0.97 0.00 1.72 0.00 1.52 0.00 0.82 0.78 0.85 0.76 0.99 1.80 0.68 0.00 2.45 1.22 1.47 0.00 0.87 1.12 0.00 0.81 0.00 0.67 0.00 1.05 1.04 1.32 0.71 K alternative_acceptor Kmn1,I_chrX_11466174_11466223 chrX - chrX_11466166_11466223 chrX_11466174_11466223 chrX_11466224_11466323;chrX_11466074_11466165 0.00 0.00 1.35 2.56 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 2.00 0.00 0.00 1.92 0.00 1.54 0.00 0.80 0.00 6.25 1.14 0.00 1.59 0.00 1.12 0.00 2.00 0.00 0.00 1.56 0.00 2.06 0.00 0.00 0.79 0.00 0.88 0.00 0.00 0.79 0.00 0.00 1.47 1.15 0.00 2.33 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette EI_chr2R_13107609_13162914,mbl,CEI_chr2R_13153717_13238598,I_chr2R_13163569_13203579 chr2R + chr2R_13153717_13238598 chr2R_13153717_13162914;chr2R_13163569_13238598 chr2R_13162915_13163568 chr2R_13153617_13153716;chr2R_13238599_13238698 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention eIF-3p66,CE_chr3R_19507058_19507181,CG16710,CG18754 chr3R + chr3R_19507232_19507307 chr3R_19507231_19507232;chr3R_19507307_19507308 chr3R_19507182_19507231;chr3R_19507308_19508049 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.34 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32441 chr3L + chr3L_21568012_21568326 chr3L_21568011_21568012;chr3L_21568326_21568327 chr3L_21567844_21568011;chr3L_21568327_21568710 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 4.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 K intron_retention slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,RI_chr2R_20289332_20289739,I_chr2R_20289332_20289846,I_chr2R_20289332_20290093 chr2R - chr2R_20289332_20290083 chr2R_20289331_20289332;chr2R_20290083_20290084 chr2R_20289232_20289331;chr2R_20290084_20290204 40.27 47.83 47.83 57.50 36.84 22.73 48.08 54.55 45.83 50.00 45.00 41.94 42.42 40.54 42.86 42.47 36.11 44.00 42.11 50.00 30.43 48.48 28.26 29.17 40.00 33.33 46.67 27.27 52.63 28.57 32.56 NA 57.58 45.90 31.03 35.90 28.57 38.46 41.67 31.82 44.44 44.23 32.00 28.57 NA 23.08 44.00 15.38 38.33 35.71 35.71 21.43 26.32 30.77 45.95 NA 42.86 31.03 K intron_retention CTCF,I_chr3L_7352698_7352777 chr3L - chr3L_7349106_7349166 chr3L_7349105_7349106;chr3L_7349166_7349167 chr3L_7347142_7349105;chr3L_7349167_7349559 3.92 6.45 2.94 7.69 0.00 6.45 0.00 3.57 8.06 0.00 3.85 6.78 4.65 3.45 5.26 2.86 0.00 12.50 10.71 4.48 0.00 0.00 5.00 4.76 6.45 2.78 25.00 15.79 22.73 3.70 0.00 7.32 0.91 3.92 2.56 0.00 6.12 0.00 6.82 5.41 3.39 5.56 7.41 6.67 0.00 2.33 0.00 6.74 6.45 4.35 7.69 4.00 3.33 0.00 0.00 3.45 0.00 0.00 K intron_retention CG17292 chr2L + chr2L_8373915_8373983 chr2L_8373914_8373915;chr2L_8373983_8373984 chr2L_8373540_8373914;chr2L_8373984_8374257 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 1.89 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 1.25 0.00 K intron_retention Crag,I_chrX_8494280_8494352 chrX + chrX_8491748_8493063 chrX_8491747_8491748;chrX_8493063_8493064 chrX_8491445_8491747;chrX_8493064_8493496 1.11 2.48 1.75 0.00 0.00 0.00 0.00 1.80 0.85 0.00 0.00 2.05 3.12 1.10 0.00 0.00 0.00 1.19 0.00 1.26 1.14 1.11 1.40 2.40 3.09 0.00 1.38 2.38 1.65 0.75 0.96 2.38 1.11 0.00 0.00 2.21 1.12 1.40 2.02 2.30 0.00 1.79 0.00 0.00 0.00 0.53 1.69 1.54 1.14 0.00 2.15 2.44 2.20 0.00 0.87 0.00 0.83 0.00 K alternative_acceptor pgant5,I_chr2L_5078418_5078461,I_chr2L_5079575_5093241 chr2L - chr2L_5078401_5078461 chr2L_5078418_5078461 chr2L_5078462_5078561;chr2L_5078318_5078400 0.00 0.00 0.00 2.33 0.00 0.00 1.47 0.00 0.69 0.00 0.00 0.78 1.47 1.41 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 1.20 3.64 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.82 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG34123,I_chr2R_11159045_11159622,RI_chr2R_11160894_11162043,I_chr2R_11167854_11168411 chr2R - chr2R_11154968_11155346 chr2R_11154967_11154968;chr2R_11155346_11155347 chr2R_11154735_11154967;chr2R_11155347_11155470 10.46 10.71 0.00 11.11 21.05 0.00 10.81 7.50 6.85 21.05 0.00 22.86 26.32 15.38 10.00 9.09 0.00 6.25 9.09 10.20 10.00 38.89 11.63 12.20 11.11 7.41 13.64 14.29 15.38 0.00 3.03 7.69 8.33 10.00 8.70 36.36 7.14 14.71 13.04 10.00 NA 9.09 14.29 15.62 15.79 15.62 0.00 16.67 8.62 12.50 9.52 16.00 14.81 13.33 6.52 19.05 7.14 6.90 K intron_retention Csk,I_chr3R_7463337_7463512,I_chr3R_7468928_7472509 chr3R - chr3R_7460311_7460380 chr3R_7460310_7460311;chr3R_7460380_7460381 chr3R_7459017_7460310;chr3R_7460381_7460718 100.00 98.48 100.00 100.00 100.00 97.37 99.12 100.00 100.00 100.00 96.97 99.18 100.00 100.00 100.00 100.00 100.00 97.56 98.57 100.00 97.06 98.28 100.00 100.00 97.67 97.78 98.15 100.00 100.00 100.00 100.00 100.00 97.87 100.00 97.83 100.00 100.00 97.22 96.67 100.00 97.96 100.00 98.44 100.00 100.00 97.18 98.00 100.00 100.00 100.00 98.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention bbx chrX + chrX_21241750_21241819 chrX_21241749_21241750;chrX_21241819_21241820 chrX_21240719_21241749;chrX_21241820_21241901 0.00 0.00 2.38 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 4.65 4.26 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 1.92 0.00 0.00 0.00 K alternative_donor l(2)s5379,RI_chr2L_2228057_2229265,I_chr2L_2229012_2229265,I_chr2L_2229179_2229265 chr2L + chr2L_2227282_2229265;chr2L_2229012_2229265 chr2L_2228057_2229265 chr2L_2229266_2229365;chr2L_2227182_2227281 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Cap-H2 chr3R + chr3R_6590301_6590357 chr3R_6590300_6590301;chr3R_6590357_6590358 chr3R_6590165_6590300;chr3R_6590358_6590920 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG12012,CG12014 chr3L + chr3L_3376948_3376998 chr3L_3376952_3376998 chr3L_3376999_3377656;chr3L_3376786_3376947 0.48 0.00 1.44 0.00 0.00 0.69 1.13 1.05 0.94 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.90 0.00 0.65 0.81 0.00 0.00 0.56 0.48 0.00 0.65 0.70 0.00 0.60 0.83 0.60 0.00 0.71 0.46 1.09 0.00 0.78 0.53 0.00 0.55 1.52 0.00 0.00 0.00 0.65 0.00 1.40 0.00 0.48 0.72 0.00 0.00 0.00 0.81 0.57 1.44 0.47 0.56 N alternative_donor 4EHP,RI_chr3R_19927769_19928262,Syx1A chr3R - chr3R_19927769_19929293;chr3R_19927769_19928262 chr3R_19927769_19932546 chr3R_19927676_19927768;chr3R_19932547_19933006 0.62 0.00 0.00 0.67 1.37 0.00 0.00 0.62 0.48 0.00 0.00 0.68 0.00 1.23 1.06 0.80 1.32 1.35 1.18 1.09 1.59 0.76 0.82 0.00 0.00 0.00 0.00 1.59 1.19 1.28 0.00 0.00 0.76 0.00 0.00 1.25 0.00 1.43 1.03 0.78 0.00 0.59 0.00 1.10 1.92 0.00 0.00 0.84 0.00 2.33 1.01 1.72 0.00 0.00 0.00 0.00 1.79 0.00 K alternative_acceptor RpS18,CG8908,EI_chr2R_16151918_16151997,I_chr2R_16151918_16152036,I_chr2R_16151938_16152065,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151938_16152065;chr2R_16151938_16152036;chr2R_16151938_16151997 chr2R_16151938_16152006 chr2R_16151852_16151937;chr2R_16152066_16152066 0.02 0.00 0.00 0.03 0.00 0.07 0.02 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.02 0.05 0.03 0.02 0.03 0.01 0.00 0.00 0.02 0.02 0.03 0.03 0.02 0.41 0.03 0.03 0.02 0.00 0.03 0.02 0.00 0.03 0.00 0.00 0.00 0.04 0.03 0.01 0.03 0.00 0.02 0.00 0.02 0.04 0.02 0.00 0.02 0.04 0.00 0.00 0.02 0.02 0.01 0.02 K jcn_only_AD G-salpha60A chr2R + chr2R_19830349_19831752;chr2R_19830125_19831752 chr2R_19830338_19831752 chr2R_19831753_19832263;chr2R_19830091_19830124 8.82 33.33 5.26 4.94 7.89 12.50 7.32 5.08 4.80 NA 13.33 10.14 6.06 0.00 2.04 8.22 5.36 16.00 9.26 6.42 10.53 NA 3.92 10.53 NA 11.76 30.77 NA 33.33 NA 7.32 NA NA 6.67 NA NA 3.49 12.50 13.51 34.29 NA 6.02 9.38 16.22 NA 27.27 8.82 NA 7.79 4.55 8.33 16.67 15.00 NA 13.21 20.00 4.26 NA K alternative_acceptor blow,RI_chr2R_3470434_3470776 chr2R - chr2R_3472844_3474436 chr2R_3472863_3474436 chr2R_3474437_3474581;chr2R_3472561_3472843 97.73 96.15 100.00 100.00 92.31 95.65 96.55 97.67 100.00 100.00 95.45 97.83 88.24 95.83 100.00 100.00 95.00 100.00 96.15 96.67 100.00 97.44 97.67 97.14 95.24 100.00 100.00 100.00 97.30 96.97 91.11 95.45 98.28 97.73 100.00 100.00 100.00 96.43 97.50 98.15 91.43 97.92 94.74 100.00 100.00 96.36 100.00 95.74 97.96 96.88 97.44 100.00 100.00 100.00 100.00 100.00 97.50 97.83 K intron_retention CG11739,RI_chr3R_205772_205830,I_chr3R_207254_207600 chr3R + chr3R_206354_206424 chr3R_206353_206354;chr3R_206424_206425 chr3R_206226_206353;chr3R_206425_206932 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 5.71 0.00 0.00 0.00 0.00 0.00 1.54 0.00 4.00 0.00 0.00 0.00 0.00 4.44 2.04 0.00 0.00 0.00 0.00 1.82 0.00 1.44 0.00 0.00 0.00 0.00 0.00 1.09 2.75 1.57 0.00 K multi_cassette Nipped-B,I_chr2R_580301_580515,I_chr2R_580453_580515,I_chr2R_580989_582555,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_580301_582623 chr2R_580301_580367;chr2R_580453_580515;chr2R_580674_580752;chr2R_580989_582623 chr2R_580368_580452;chr2R_580516_580673;chr2R_580753_580988 chr2R_580236_580300;chr2R_582624_582655 100.00 100.00 100.00 96.15 90.00 92.86 98.04 97.50 97.87 100.00 100.00 97.30 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 95.24 100.00 85.71 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 95.83 91.67 91.67 86.67 100.00 100.00 100.00 100.00 K jcn_only_AA SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_16982134_16983336;chr3R_16982134_16982890;chr3R_16982134_16983164;chr3R_16982134_16983218 chr3R_16982134_16983159 chr3R_16982126_16982133;chr3R_16983337_16983376 63.64 NA 35.48 62.86 NA NA 64.71 59.62 68.00 NA NA 63.64 63.64 57.58 68.18 64.86 NA 52.38 63.33 64.29 NA NA NA NA NA NA NA NA NA NA 74.19 NA NA 65.31 NA NA NA NA NA NA NA 58.49 NA NA NA NA NA NA 54.55 NA NA NA NA NA 60.87 NA NA 75.00 K jcn_only_AA CG10880,CG15386_CG42371 chr2L - chr2L_2215457_2215514;chr2L_2215454_2215514 chr2L_2215460_2215514 chr2L_2215515_2216288;chr2L_2215021_2215453 97.56 NA NA 100.00 NA NA NA 95.45 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 96.30 NA NA NA NA NA 96.30 100.00 NA NA NA NA NA NA 95.45 100.00 NA NA NA 94.12 97.56 NA 93.75 NA NA NA NA NA NA NA NA NA 100.00 K intron_retention unc-104,I_chr2R_12643956_12644069,I_chr2R_12643956_12644305,RI_chr2R_12650846_12659758 chr2R - chr2R_12643956_12644069 chr2R_12643955_12643956;chr2R_12644069_12644070 chr2R_12643856_12643955;chr2R_12644070_12644158 47.83 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 47.83 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Rheb,CRMP chr3R + chr3R_1395694_1395749 chr3R_1395693_1395694;chr3R_1395749_1395750 chr3R_1395564_1395693;chr3R_1395750_1395813 10.00 11.90 13.04 15.79 11.11 8.54 12.41 7.80 5.92 6.98 15.07 10.96 10.00 9.46 8.33 12.84 9.52 9.59 11.36 10.58 10.00 14.29 14.44 7.78 21.43 28.57 11.39 11.43 37.68 8.33 12.12 8.00 5.67 11.21 10.61 19.30 10.20 9.72 9.00 12.38 18.07 10.39 11.76 8.41 7.84 5.31 9.48 11.39 9.88 8.42 9.76 6.56 3.12 7.79 9.91 10.26 7.00 6.42 K intron_retention CG42327,CG14715,I_chr3R_7498847_7498975,I_chr3R_7506312_7506381 chr3R + chr3R_7498847_7498949 chr3R_7498846_7498847;chr3R_7498949_7498950 chr3R_7498747_7498846;chr3R_7498950_7499696 0.00 0.00 1.69 2.99 1.11 0.83 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.00 0.00 1.17 4.10 0.00 0.00 0.86 1.43 0.00 0.55 0.00 0.00 0.00 0.00 0.97 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.53 0.00 2.40 0.00 0.00 0.00 0.00 0.00 0.89 0.00 K cassette CG32772,CG6903 chrX + chrX_4803831_4806775 chrX_4803831_4804884;chrX_4805212_4806775 chrX_4804885_4805211 chrX_4803485_4803830;chrX_4806776_4806908 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_last_exon CG6340,I_chrX_15402291_15403750 chrX + chrX_15377454_15379154 chrX_15377454_15378562 chrX_15379155_15379301 chrX_15378563_15379150 chrX_15377232_15377453 17.24 13.33 21.43 12.77 15.38 21.43 27.78 22.22 20.00 25.00 25.00 18.75 30.00 33.33 18.75 26.92 15.38 13.33 14.29 18.18 7.14 11.11 22.86 16.67 25.00 13.33 30.77 30.00 6.06 15.38 22.73 17.39 13.04 21.05 15.79 16.67 9.62 17.65 8.70 17.02 15.00 15.79 25.00 10.53 9.68 25.00 11.11 12.82 25.93 18.52 18.75 14.29 11.76 12.00 23.53 17.24 15.79 17.50 K intron_retention SWAP,RI_chrX_936466_936762,I_chrX_936466_936835,RI_chrX_936919_937245,RI_chrX_938935_938985,I_chrX_941459_982652 chrX + chrX_936466_936966 chrX_936465_936466;chrX_936966_936967 chrX_936366_936465;chrX_936967_937018 75.00 80.00 NA 58.82 NA 60.00 60.00 86.67 73.08 NA NA 69.23 NA NA 81.82 100.00 NA NA 88.89 63.16 NA NA 71.43 NA NA NA NA NA NA 88.89 56.52 NA 72.73 92.31 NA NA 90.91 NA NA 65.00 88.89 77.27 NA NA NA NA 75.00 75.00 80.95 63.64 50.00 NA NA NA 90.00 NA NA NA K jcn_only_AD osa,I_chr3R_13542657_13542834,I_chr3R_13542657_13543500,I_chr3R_13542657_13543662,I_chr3R_13542657_13543668,I_chr3R_13543730_13543786 chr3R - chr3R_13542657_13543968;chr3R_13542657_13543500;chr3R_13542657_13543662;chr3R_13542657_13542834;chr3R_13542657_13543668 chr3R_13542657_13543677 chr3R_13542557_13542656;chr3R_13543969_13544017 81.82 78.48 87.06 71.01 85.92 72.88 80.28 77.78 81.82 72.06 92.39 78.49 77.50 83.84 82.02 82.08 77.87 83.95 83.00 80.00 79.52 79.46 76.97 76.19 79.10 73.97 67.37 83.12 81.36 77.17 83.82 83.33 87.92 83.61 83.10 75.65 70.64 82.50 71.11 84.05 81.58 82.63 87.69 85.04 82.05 87.76 81.82 81.90 81.31 79.07 77.62 83.56 94.83 62.96 85.19 84.21 90.00 86.05 N jcn_only_AD Syb chr2R - chr2R_6137333_6138451;chr2R_6137333_6138021 chr2R_6137333_6137873 chr2R_6137005_6137332;chr2R_6138452_6138649 100.00 100.00 NA 86.76 NA NA NA 85.51 100.00 NA 100.00 100.00 NA NA NA 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA NA NA NA 40.91 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA K intron_retention yellow-f,yellow-f2 chr3R - chr3R_8817405_8817465 chr3R_8817404_8817405;chr3R_8817465_8817466 chr3R_8817157_8817404;chr3R_8817466_8818121 0.00 0.00 1.01 0.95 0.00 0.57 0.69 0.00 0.55 1.68 0.00 0.90 0.00 0.00 0.00 0.38 0.00 0.00 0.23 0.66 0.00 0.00 0.00 1.37 0.00 0.00 1.30 0.79 2.08 0.00 0.87 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.29 0.00 0.49 0.00 0.00 0.00 0.22 0.00 0.49 0.00 K multi_cassette p120ctn,I_chr2R_482968_494268,I_chr2R_487593_493262 chr2R + chr2R_482968_494268 chr2R_482968_486413;chr2R_486654_486773;chr2R_487426_487488;chr2R_487593_494268 chr2R_486414_486653;chr2R_486774_487425;chr2R_487489_487592 chr2R_482868_482967;chr2R_494269_494368 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 83.33 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 60.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 K intron_retention Gap1 chr3L - chr3L_9833437_9833611 chr3L_9833436_9833437;chr3L_9833611_9833612 chr3L_9832217_9833436;chr3L_9833612_9834663 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG8116,CG11760,I_chr3R_4545118_4545525 chr3R + chr3R_4544094_4545525 chr3R_4544093_4544094;chr3R_4545525_4545526 chr3R_4543571_4544093;chr3R_4545526_4545625 0.00 0.00 0.00 2.38 0.00 0.00 4.17 0.00 0.00 0.00 NA 0.00 0.00 5.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 4.17 0.00 0.00 0.00 2.08 4.35 2.86 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Eph,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_640676_640879;chr4_640734_640879 chr4_640804_640879 chr4_640880_640963;chr4_640576_640675 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 96.67 NA 98.72 NA 92.31 96.88 98.00 95.24 NA 100.00 100.00 NA 100.00 96.00 NA NA NA 94.44 NA NA 100.00 NA NA NA NA NA 100.00 100.00 97.73 100.00 100.00 95.83 100.00 NA 95.65 95.59 NA 94.12 NA NA NA 100.00 100.00 NA NA K multi_cassette CG7777,I_chr2R_7323928_7328572 chr2R + chr2R_7323928_7328572 chr2R_7323928_7327302;chr2R_7327374_7327474;chr2R_7327631_7327691;chr2R_7327836_7328572 chr2R_7327303_7327373;chr2R_7327475_7327630;chr2R_7327692_7327835 chr2R_7323828_7323927;chr2R_7328573_7328672 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N jcn_only_AA MAPk-Ak2,RI_chrX_5655618_5656137,I_chrX_5656715_5657427,I_chrX_5656715_5657893,I_chrX_5656715_5657974 chrX - chrX_5656678_5658126 chrX_5656715_5658126 chrX_5658127_5658138;chrX_5656615_5656677 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG3689 chr3L + chr3L_9404522_9404578 chr3L_9404522_9404560 chr3L_9404148_9404521;chr3L_9404579_9404843 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention hppy,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15105700_15110744 chr2R_15105699_15105700;chr2R_15110744_15110745 chr2R_15105636_15105699;chr2R_15110745_15110784 48.69 35.71 NA NA NA NA 76.47 25.00 41.38 NA NA 71.43 88.89 NA 50.00 36.84 NA 43.75 NA 55.00 NA 60.56 50.00 42.86 63.64 46.15 37.50 NA 22.22 50.00 45.45 NA 42.86 52.94 NA 23.81 42.11 46.15 50.00 64.71 53.33 62.50 NA 47.37 26.67 50.00 35.71 84.62 61.54 NA 57.14 NA 30.77 NA 50.00 NA 30.77 NA K intron_retention CG2924,I_chrX_2168373_2168893 chrX - chrX_2159850_2159909 chrX_2159849_2159850;chrX_2159909_2159910 chrX_2159581_2159849;chrX_2159910_2159988 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.78 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ps,I_chr3R_5243723_5265067,I_chr3R_5243723_5270765,noncoding_15575,I_chr3R_5245770_5265067,I_chr3R_5245770_5269732,I_chr3R_5258562_5264836,I_chr3R_5262841_5265067,RI_chr3R_5262841_5266402,I_chr3R_5265428_5266402,I_chr3R_5265428_5269732,I_chr3R_5265428_5270765,CG16777,I_chr3R_5269733_5270765 chr3R + chr3R_5243723_5245504 chr3R_5243722_5243723;chr3R_5245504_5245505 chr3R_5243705_5243722;chr3R_5245505_5245526 25.55 35.71 31.25 23.68 25.00 NA 33.33 28.57 24.32 NA 16.67 20.83 28.00 42.86 13.79 46.88 16.67 16.67 25.00 29.63 22.22 41.67 60.00 NA NA 23.81 NA NA 25.00 46.67 18.75 NA 40.00 23.08 NA NA 20.00 NA NA 30.00 NA 22.22 26.09 40.00 NA NA NA 38.10 28.26 NA 41.67 NA NA NA 22.22 NA NA 25.00 K alternative_acceptor Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629527_2629921 chr3L_2629585_2629921 chr3L_2629922_2630021;chr3L_2629427_2629526 84.05 96.97 82.22 88.10 84.09 77.78 89.06 82.95 90.08 92.31 100.00 84.44 94.68 90.24 74.19 80.00 91.11 85.00 84.21 76.42 97.83 NA 81.58 82.50 89.47 81.36 91.49 100.00 57.89 80.95 72.73 76.47 92.86 86.96 61.11 83.33 89.47 85.19 91.18 86.96 75.00 84.62 92.68 78.38 66.67 70.00 71.43 66.00 80.70 83.33 82.05 86.21 71.43 81.82 84.00 90.48 84.62 56.52 K intron_retention CG6512 chr3L - chr3L_17234159_17234316 chr3L_17234158_17234159;chr3L_17234316_17234317 chr3L_17233763_17234158;chr3L_17234317_17234566 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention spin,I_chr2R_12013288_12013847 chr2R + chr2R_12024072_12024709 chr2R_12024071_12024072;chr2R_12024709_12024710 chr2R_12023930_12024071;chr2R_12024710_12025743 0.00 0.00 0.00 2.02 0.00 0.00 0.00 0.78 1.56 0.00 0.00 0.43 0.00 0.00 0.00 0.64 0.00 0.00 0.62 0.00 0.90 2.74 0.00 0.00 1.40 0.00 2.15 0.85 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.75 0.00 0.00 0.49 0.34 0.00 0.64 0.00 0.47 0.00 0.49 0.55 0.00 0.79 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Ephrin,I_chr4_595055_597604,RI_chr4_596272_596341 chr4 + chr4_595055_597604 chr4_595055_596327;chr4_596952_597604 chr4_596328_596951 chr4_594955_595054;chr4_597605_597704 98.36 98.41 98.89 74.05 98.39 98.63 98.69 98.76 97.56 100.00 100.00 97.24 96.51 98.67 100.00 97.67 98.82 98.72 97.27 97.33 98.51 98.59 97.75 100.00 96.00 94.59 98.82 95.65 87.04 98.46 98.06 97.50 94.94 96.32 100.00 98.36 98.36 100.00 95.00 98.10 100.00 98.12 94.67 97.80 97.06 100.00 97.96 97.65 99.35 100.00 100.00 98.11 97.30 100.00 99.04 97.56 97.96 100.00 K cassette CaMKII,I_chr4_1059085_1060638,I_chr4_1059085_1065781,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1058367_1065781 chr4_1058367_1058984;chr4_1059085_1065781 chr4_1058985_1059084 chr4_1058272_1058366;chr4_1065782_1065874 91.10 90.91 100.00 88.89 83.33 89.47 83.72 90.48 88.89 NA 100.00 86.11 61.90 100.00 78.26 96.67 95.45 100.00 93.10 100.00 90.00 85.71 91.67 90.91 77.78 92.31 80.00 83.33 50.00 100.00 96.43 90.00 83.33 94.87 90.00 91.67 100.00 NA NA 93.33 85.71 82.35 95.24 91.67 100.00 91.67 90.91 76.92 91.30 93.33 92.86 77.78 85.71 83.33 92.31 100.00 93.75 100.00 K intron_retention Hr78,I_chr3L_21490089_21490390,CG33214 chr3L - chr3L_21489978_21490390 chr3L_21489977_21489978;chr3L_21490390_21490391 chr3L_21489920_21489977;chr3L_21490391_21490490 80.00 NA NA 80.00 NA NA 90.00 78.57 71.43 NA NA 84.62 100.00 NA 80.00 69.23 NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA 88.89 NA NA 83.33 NA NA NA NA NA NA NA 86.67 NA NA NA NA NA NA 80.00 NA NA NA NA NA 80.00 NA NA NA K intron_retention CG42348,I_chr3L_20149990_20151579 chr3L - chr3L_20148379_20148637 chr3L_20148378_20148379;chr3L_20148637_20148638 chr3L_20148001_20148378;chr3L_20148638_20148759 0.00 0.00 4.55 16.67 0.00 0.00 0.00 6.25 1.25 0.00 0.00 0.00 11.76 0.00 0.00 0.00 0.00 16.67 9.09 1.79 0.00 5.88 3.92 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 3.03 4.35 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_715043_716322 chr4_715042_715043;chr4_716322_716323 chr4_714007_715042;chr4_716323_716675 15.38 NA NA 36.00 NA NA 25.00 13.79 30.30 NA NA NA NA NA NA 8.70 NA NA NA 9.09 NA NA NA NA NA NA NA NA NA NA NA NA NA 15.15 NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA 15.38 NA NA NA NA NA NA NA NA NA N jcn_only_AA Moe,I_chrX_8774434_8775874,I_chrX_8774434_8791759 chrX - chrX_8785657_8792216;chrX_8791324_8792216 chrX_8774434_8792216 chrX_8792217_8792259 100.00 NA 100.00 100.00 100.00 NA 100.00 97.30 100.00 NA NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 80.49 100.00 100.00 NA NA NA NA 100.00 NA 95.45 NA NA NA 100.00 NA NA NA K alternative_acceptor bigmax,E_chr3R_23113334_23113889 chr3R - chr3R_23113436_23113506 chr3R_23113442_23113506 chr3R_23113507_23113569;chr3R_23113087_23113435 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 97.87 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 K intron_retention CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907784_9908405 chr2L_9907783_9907784;chr2L_9908405_9908406 chr2L_9907756_9907783;chr2L_9908406_9908422 87.50 100.00 90.91 83.87 87.50 NA 95.00 86.36 88.57 NA NA 76.19 78.57 90.00 92.31 87.50 92.86 66.67 76.47 73.68 NA 93.75 82.35 88.89 NA NA 85.71 88.89 88.89 94.44 90.00 NA 93.33 84.00 87.50 87.50 84.62 NA 66.67 81.25 NA 84.00 78.57 68.75 NA 70.00 NA NA 80.95 88.89 75.00 NA NA NA 92.31 NA NA NA K cassette alpha-Spec,I_chr3L_1780038_1781094 chr3L - chr3L_1779986_1781094 chr3L_1779986_1780886;chr3L_1780917_1781094 chr3L_1780887_1780916 chr3L_1779938_1779985;chr3L_1781095_1781194 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention jet chr2L - chr2L_4948560_4948897 chr2L_4948559_4948560;chr2L_4948897_4948898 chr2L_4948202_4948559;chr2L_4948898_4949817 12.50 12.50 NA NA NA NA NA NA 11.76 NA NA 13.33 NA NA NA NA NA NA NA 0.00 NA 36.36 9.09 7.69 NA NA 20.00 22.22 NA NA NA 16.67 NA NA NA NA 14.81 10.53 12.00 13.04 NA 11.76 NA 13.33 13.64 17.65 15.00 NA 10.53 10.53 10.53 NA NA 5.26 NA 15.38 8.33 NA K intron_retention Khc-73 chr2R - chr2R_11409634_11410378 chr2R_11409633_11409634;chr2R_11410378_11410379 chr2R_11409616_11409633;chr2R_11410379_11410524 12.41 NA NA 10.53 NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA 21.43 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 4.35 15.79 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG9740,RI_chr3R_5083859_5083977,I_chr3R_5083907_5083977 chr3R - chr3R_5083907_5083977;chr3R_5083859_5083977 chr3R_5083911_5083977 chr3R_5083978_5084077;chr3R_5083807_5083858 95.83 100.00 94.12 100.00 90.00 91.67 85.00 100.00 97.06 100.00 92.86 97.14 100.00 100.00 95.00 100.00 100.00 92.86 100.00 94.59 100.00 94.74 95.00 100.00 85.71 100.00 100.00 100.00 100.00 92.86 92.86 80.00 94.44 100.00 100.00 94.12 95.00 94.74 96.55 95.65 100.00 100.00 91.67 100.00 94.74 95.83 95.45 100.00 100.00 96.55 95.83 91.67 94.44 94.74 100.00 95.45 95.45 96.55 K intron_retention Aef1 chr3L + chr3L_21428231_21428292 chr3L_21428230_21428231;chr3L_21428292_21428293 chr3L_21428125_21428230;chr3L_21428293_21429109 98.39 97.06 97.37 100.00 96.43 100.00 100.00 98.39 100.00 100.00 96.88 98.31 100.00 100.00 97.78 96.83 97.06 100.00 97.44 98.78 100.00 95.74 96.55 100.00 100.00 96.55 100.00 100.00 100.00 98.18 97.50 96.30 97.96 96.67 97.14 100.00 97.78 96.55 100.00 93.02 100.00 98.55 100.00 100.00 100.00 100.00 95.45 100.00 97.30 96.77 97.50 100.00 97.78 100.00 97.96 96.67 100.00 100.00 N alternative_last_exon CG9099 chrX - chrX_16779835_16780350 chrX_16780262_16780350 chrX_16778097_16779834 chrX_16779904_16780261 chrX_16780351_16780489 100.00 100.00 100.00 96.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 100.00 K intron_retention CG8298 chr2R + chr2R_7876833_7876886 chr2R_7876832_7876833;chr2R_7876886_7876887 chr2R_7876633_7876832;chr2R_7876887_7877015 0.00 0.00 NA 5.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 4.76 NA NA 0.00 0.00 0.00 NA 8.33 NA NA 0.00 NA NA NA NA NA NA 4.55 0.00 10.53 0.00 NA 2.70 NA 0.00 NA NA NA NA 0.00 NA 10.00 7.14 NA NA NA 0.00 0.00 NA K intron_retention CG4199,I_chrX_1962457_1964222 chrX - chrX_1965614_1965872 chrX_1965613_1965614;chrX_1965872_1965873 chrX_1965393_1965613;chrX_1965873_1966087 5.88 3.03 6.12 11.43 2.48 6.67 11.93 5.63 5.09 7.41 4.60 8.57 6.52 3.70 4.76 4.95 3.19 6.73 8.05 5.49 4.12 38.20 4.81 5.96 7.55 8.05 6.67 6.17 8.72 3.57 6.86 9.09 7.45 6.85 6.60 11.21 3.24 5.30 3.55 5.32 8.26 5.29 9.46 2.88 5.88 5.92 3.94 5.46 5.88 4.20 7.32 5.45 6.98 6.32 5.79 3.88 4.57 5.80 K alternative_donor Osi19 chr3R + chr3R_2161894_2162001 chr3R_2161921_2162001 chr3R_2162002_2162010;chr3R_2161644_2161893 65.04 80.00 66.67 89.47 66.67 55.56 46.15 65.38 60.00 NA 60.00 65.52 80.00 80.00 58.33 63.64 54.55 NA 66.67 57.14 NA 84.62 76.47 85.71 75.00 NA 57.14 75.00 53.33 45.45 72.73 NA 58.33 64.71 77.78 75.00 69.23 NA 61.11 40.00 55.56 70.37 72.73 61.11 47.83 46.15 73.33 55.56 72.22 66.67 88.89 NA 50.00 50.00 57.14 53.33 66.67 30.77 K intron_retention opa1-like,I_chr2R_10119470_10120234,I_chr2R_10121848_10121900,I_chr2R_10122128_10122197,I_chr2R_10122334_10122393 chr2R - chr2R_10121848_10121947 chr2R_10121847_10121848;chr2R_10121947_10121948 chr2R_10121778_10121847;chr2R_10121948_10122000 0.00 0.00 6.06 4.76 10.00 0.00 5.26 5.26 1.33 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 2.38 9.52 0.00 2.70 0.00 16.67 5.26 13.89 0.00 2.82 0.00 2.94 0.00 0.00 0.00 0.00 0.00 6.25 5.88 5.56 3.85 0.00 10.00 0.00 4.62 1.56 3.45 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 N cassette mth chr3L - chr3L_345886_346814 chr3L_345886_346098;chr3L_346339_346814 chr3L_346099_346338 chr3L_345375_345885;chr3L_346815_346822 85.71 NA 88.89 88.89 NA 85.71 95.00 64.71 69.57 NA 100.00 83.33 66.67 80.00 75.00 93.75 66.67 87.50 81.82 93.33 83.33 100.00 73.33 85.71 80.00 87.50 87.50 NA NA 87.50 85.71 100.00 100.00 80.95 83.33 83.33 NA 83.33 100.00 86.67 85.71 92.86 66.67 62.50 NA 90.00 NA 92.86 78.95 100.00 66.67 87.50 NA 80.00 76.92 83.33 NA 87.50 K jcn_only_AD CG8839,I_chr2R_8229288_8229488,I_chr2R_8229288_8231538 chr2R - chr2R_8229288_8231968;chr2R_8229288_8232025;chr2R_8229288_8231964 chr2R_8229288_8231966 chr2R_8229188_8229287;chr2R_8232026_8232112 6.92 5.94 8.37 4.82 7.03 5.96 7.87 5.31 6.68 10.11 4.42 5.04 9.38 7.18 6.44 5.28 10.00 5.45 3.85 8.05 5.95 8.16 7.55 6.78 6.36 6.97 3.66 11.11 6.11 3.70 4.33 4.20 7.81 7.51 9.80 3.75 7.69 5.06 7.75 6.67 10.81 6.93 10.55 9.62 8.67 6.88 10.23 11.17 6.92 0.00 8.26 6.36 6.86 3.70 4.76 8.70 11.28 9.70 K cassette Mtl,I_chr3R_23462559_23463794 chr3R + chr3R_23462559_23463794 chr3R_23462559_23463559;chr3R_23463726_23463794 chr3R_23463560_23463725 chr3R_23462459_23462558;chr3R_23463795_23463894 98.99 98.59 100.00 96.75 98.59 98.78 98.15 99.11 100.00 98.00 98.44 99.29 98.18 100.00 99.02 99.00 100.00 100.00 100.00 100.00 100.00 95.05 100.00 100.00 98.46 97.70 98.96 100.00 98.78 98.51 98.85 97.83 100.00 100.00 98.33 98.55 99.16 98.81 99.18 99.30 100.00 99.27 100.00 100.00 97.50 100.00 97.37 100.00 98.63 98.11 98.86 98.28 100.00 98.31 98.99 98.44 98.65 100.00 K jcn_only_AA RpII15 chr3R + chr3R_10134845_10134906 chr3R_10134845_10134899 chr3R_10134776_10134844;chr3R_10134907_10135970 71.74 NA 76.32 67.92 64.71 76.00 77.42 70.73 70.77 NA 88.24 76.47 NA 79.17 71.74 68.00 63.33 80.77 62.86 77.78 57.69 65.00 NA NA NA 78.12 NA NA NA NA 64.86 NA NA 67.24 NA NA 65.85 NA NA 80.00 NA 71.43 74.07 75.00 74.42 NA NA NA 67.69 82.61 NA 77.27 76.00 NA 65.79 73.91 59.46 68.18 K jcn_only_AA CG8043,CG11755 chr3R + chr3R_4502770_4502817;chr3R_4502770_4502843;chr3R_4502770_4502810 chr3R_4502770_4502834 chr3R_4502645_4502769;chr3R_4502844_4503955 93.72 NA 95.45 89.66 NA 95.45 93.33 88.00 89.66 NA NA 94.12 NA NA 96.77 92.31 NA 90.00 90.00 86.49 NA 96.00 80.00 100.00 NA 100.00 NA NA NA NA 94.29 NA NA 88.89 NA 86.96 85.71 96.30 95.24 90.00 NA 100.00 NA 95.24 NA 90.48 NA NA 91.89 NA 90.00 NA NA NA 95.45 100.00 95.00 96.00 K intron_retention CG3714,I_chr2L_4190825_4191774,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4192969_4193309 chr2L_4192968_4192969;chr2L_4193309_4193310 chr2L_4192958_4192968;chr2L_4193310_4193481 12.25 NA 5.88 6.25 NA NA 8.57 17.65 15.38 NA NA 31.58 NA NA 0.00 NA NA NA NA 9.52 NA 17.02 17.65 21.74 NA NA 20.00 33.33 5.88 14.29 3.12 5.88 24.14 NA 5.56 0.00 21.43 10.53 12.00 12.82 9.52 9.52 NA 16.67 0.00 3.45 NA 8.89 13.33 14.29 24.14 27.78 NA NA NA 4.35 NA 12.50 K intron_retention CG4511,RI_chr3R_6680759_6681015 chr3R + chr3R_6680319_6680517 chr3R_6680318_6680319;chr3R_6680517_6680518 chr3R_6680218_6680318;chr3R_6680518_6680754 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 1.18 0.00 0.00 0.00 1.89 0.50 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 K alternative_donor exba,RI_chr3R_1425087_1425302,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1425087_1426209;chr3R_1425087_1425759;chr3R_1425087_1426125 chr3R_1425087_1426009 chr3R_1424987_1425086;chr3R_1426210_1426225 10.53 6.67 12.50 9.52 0.00 16.67 19.05 8.00 16.22 20.00 0.00 7.14 18.18 12.50 18.75 5.71 0.00 18.75 10.00 6.06 0.00 0.00 8.00 13.33 0.00 0.00 15.38 7.14 0.00 7.69 10.53 14.29 0.00 9.38 0.00 0.00 20.00 11.11 11.11 10.71 9.09 10.00 13.33 16.67 25.00 15.38 10.00 4.35 15.00 21.05 22.22 16.67 12.50 10.00 12.50 7.69 30.00 16.67 K alternative_acceptor Ide,I_chr3L_20366301_20366354,I_chr3L_20368434_20368519,I_chr3L_20368443_20368519 chr3L - chr3L_20368434_20368519;chr3L_20368443_20368519 chr3L_20368462_20368519 chr3L_20368520_20368619;chr3L_20368343_20368433 97.62 100.00 100.00 100.00 100.00 90.00 97.06 100.00 100.00 92.31 94.74 91.89 100.00 85.71 100.00 100.00 100.00 100.00 95.00 97.62 94.12 95.00 87.18 100.00 91.30 100.00 100.00 87.50 91.67 100.00 85.71 100.00 93.10 100.00 100.00 100.00 94.59 100.00 100.00 97.30 92.31 95.12 100.00 93.75 100.00 100.00 93.75 100.00 94.74 88.89 95.00 94.44 100.00 91.67 96.00 88.24 100.00 100.00 K alternative_acceptor Cp1,Aats-phe chr2R + chr2R_9848382_9849731 chr2R_9848382_9849724 chr2R_9848168_9848381;chr2R_9849732_9849841 100.00 100.00 99.94 99.92 100.00 100.00 100.00 99.96 100.00 100.00 100.00 99.96 99.93 99.92 99.94 99.96 99.89 100.00 99.94 99.93 99.92 100.00 100.00 99.88 100.00 100.00 99.88 96.59 99.81 100.00 100.00 99.88 99.88 99.96 100.00 100.00 100.00 100.00 99.90 100.00 100.00 99.96 99.92 100.00 99.89 100.00 99.90 99.87 99.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.90 100.00 K mutually_exclusive Mhc,I_chr2L_16771142_16774449,I_chr2L_16784330_16785409 chr2L + chr2L_16768885_16769458,chr2L_16769603_16770456 chr2L_16768885_16769146,chr2L_16769291_16770456 chr2L_16769459_16769602 chr2L_16769147_16769290 chr2L_16768607_16768884;chr2L_16770457_16770837 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG10981 chr3R + chr3R_1650698_1650754;chr3R_1650698_1650778 chr3R_1650698_1650757 chr3R_1650443_1650697;chr3R_1650779_1651166 50.00 34.48 62.07 50.00 NA 50.00 54.05 53.45 45.61 NA NA 50.91 33.33 37.50 36.67 55.00 65.22 35.00 36.00 45.65 NA 41.67 52.38 51.28 37.04 37.93 49.06 NA NA 39.13 51.85 25.00 40.00 55.71 48.39 44.83 NA 44.44 52.94 54.29 NA 50.00 NA NA NA 50.00 51.61 16.67 44.12 62.16 52.63 NA 64.86 40.62 51.52 54.55 64.29 46.67 K cassette Nrx-IV chr3L + chr3L_12144508_12145276;chr3L_12142009_12145276 chr3L_12144508_12144919,chr3L_12142009_12144919;chr3L_12145117_12145276 chr3L_12144920_12145116 chr3L_12141892_12142008;chr3L_12145277_12145418 92.98 97.14 89.74 71.43 91.43 97.37 95.00 92.59 91.46 83.87 90.00 97.96 94.74 93.10 93.18 93.33 96.67 93.55 91.43 92.31 85.29 90.32 92.13 92.31 90.70 93.94 92.98 96.30 97.37 97.67 91.67 92.86 96.77 98.15 92.50 88.24 94.94 92.73 91.67 92.86 94.12 94.03 96.43 93.22 92.86 95.24 100.00 87.10 90.00 94.44 94.29 97.06 95.65 88.24 91.49 94.44 92.31 92.31 K multi_cassette lap,I_chr3R_3017854_3019314 chr3R + chr3R_3019411_3024049 chr3R_3019411_3021337;chr3R_3021618_3022015;chr3R_3022116_3023291;chr3R_3023382_3024049 chr3R_3021338_3021617;chr3R_3022016_3022115;chr3R_3023292_3023381 chr3R_3019315_3019410;chr3R_3024050_3024362 100.00 NA NA NA NA NA NA NA 66.67 NA NA NA 50.00 NA NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K cassette pr-set7 chr3R + chr3R_10141926_10142198 chr3R_10141926_10142032;chr3R_10142132_10142198 chr3R_10142033_10142131 chr3R_10141765_10141925;chr3R_10142199_10142589 6.67 5.56 5.88 7.41 NA 10.53 10.00 3.03 15.00 NA NA 7.32 5.56 6.25 6.67 6.90 NA 20.00 7.14 9.38 NA NA 5.88 NA 8.33 15.00 NA NA NA NA 4.76 NA NA 13.79 4.55 0.00 NA NA NA NA NA 6.25 5.26 NA NA NA NA 6.67 0.00 NA 6.25 NA NA NA 9.52 NA NA NA K jcn_only_AA qkr58E-2,I_chr2R_18305142_18305207 chr2R + chr2R_18305142_18305207 chr2R_18305142_18305197 chr2R_18305042_18305141;chr2R_18305208_18305307 94.59 NA NA NA NA NA 96.67 92.50 96.77 95.83 NA 97.22 NA NA NA 87.88 NA NA 85.19 98.00 NA 94.59 NA NA NA NA NA NA NA 90.00 NA NA 100.00 NA NA NA NA NA NA 94.29 NA 95.65 NA NA NA 97.06 NA 90.00 90.91 NA NA NA NA NA NA NA NA 82.86 K intron_retention RpL27A,E_chr2L_4457411_4457977,I_chr2L_4458058_4458120 chr2L - chr2L_4457275_4457374 chr2L_4457274_4457275;chr2L_4457374_4457375 chr2L_4457188_4457274;chr2L_4457375_4457410 100.00 100.00 100.00 96.77 93.75 100.00 97.96 100.00 97.87 100.00 100.00 98.28 96.97 100.00 100.00 97.14 100.00 95.83 96.67 98.31 100.00 100.00 100.00 97.67 100.00 100.00 100.00 45.95 99.75 100.00 96.88 97.37 96.55 97.92 100.00 100.00 100.00 100.00 95.45 97.83 99.38 95.92 100.00 94.44 100.00 100.00 100.00 100.00 97.62 98.51 100.00 100.00 100.00 100.00 96.88 100.00 98.51 100.00 K jcn_only_AA CG31431 chr3R + chr3R_17696730_17697680;chr3R_17696730_17697703 chr3R_17696730_17697693 chr3R_17696406_17696729;chr3R_17697704_17697862 7.21 4.90 4.22 8.30 8.15 8.55 9.56 5.17 6.10 5.56 8.97 5.86 3.60 6.74 5.35 6.03 9.16 7.95 7.07 6.65 3.91 3.28 9.52 7.41 9.65 0.88 9.03 11.90 9.30 12.50 8.84 10.81 6.25 6.95 5.88 3.57 8.94 5.56 9.22 4.94 10.20 7.48 6.42 7.41 2.47 7.91 6.67 9.91 5.36 8.60 7.45 5.84 17.74 4.29 8.25 7.21 6.80 11.63 K intron_retention Arf51F,I_chr2R_11210733_11210953 chr2R + chr2R_11210647_11210953 chr2R_11210646_11210647;chr2R_11210953_11210954 chr2R_11210633_11210646;chr2R_11210954_11211053 16.98 12.00 7.41 13.64 21.43 19.05 38.30 16.98 18.97 25.00 15.79 28.75 16.67 18.52 13.33 11.43 13.79 19.05 15.15 11.86 25.00 45.45 17.86 15.38 45.00 30.77 24.24 0.00 42.86 0.00 25.00 19.05 14.81 18.75 13.33 43.75 12.50 25.00 20.00 15.52 18.18 15.00 25.00 20.00 15.38 10.81 14.29 20.59 9.80 35.71 15.00 29.17 NA NA 10.20 11.54 0.00 5.71 K intron_retention Dscam,F_chr2R_3219886_3228832,F_chr2R_3226043_3235353,F_chr2R_3227948_3235353,F_chr2R_3228738_3235353,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3232075_3235353 chr2R_3232074_3232075;chr2R_3235353_3235354 chr2R_3232018_3232074;chr2R_3235354_3235453 41.67 NA NA NA NA NA NA NA 46.67 NA NA 50.00 NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA 38.46 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 39.13 NA NA NA NA NA NA NA NA NA K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2814327_2817753 chr2R_2814327_2816013;chr2R_2816342_2816577;chr2R_2816779_2817459;chr2R_2817604_2817753 chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817460_2817603 chr2R_2814227_2814326;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.04 100.00 98.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 100.00 K intron_retention Spase18-21,I_chr3R_2483820_2484724 chr3R + chr3R_2483820_2483889 chr3R_2483819_2483820;chr3R_2483889_2483890 chr3R_2483720_2483819;chr3R_2483890_2484149 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 1.83 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.93 0.00 0.00 N jcn_only_AA CG8444,Vps16A chr3R + chr3R_5087066_5087342 chr3R_5087066_5087327 chr3R_5086713_5087065;chr3R_5087343_5088417 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.32 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Anxb11,I_chrX_16314152_16315813 chrX - chrX_16312623_16312700 chrX_16312623_16312696 chrX_16312393_16312622;chrX_16312701_16313082 1.75 2.08 1.10 3.77 0.00 1.35 2.80 0.00 0.54 1.85 2.59 2.12 0.00 1.59 0.00 1.32 3.17 4.23 2.08 2.34 1.18 2.88 1.68 1.50 0.00 0.00 1.77 5.00 2.30 3.17 5.63 1.75 1.37 2.08 1.69 1.39 1.68 1.68 3.01 0.70 3.64 1.25 0.00 2.06 0.87 2.06 1.56 0.00 0.57 3.03 2.63 2.60 1.96 2.30 0.84 3.23 0.71 2.41 K jcn_only_AD Myd88 chr2R - chr2R_5191841_5192478 chr2R_5191841_5192444 chr2R_5191090_5191840;chr2R_5192479_5192665 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.73 0.00 0.00 1.16 4.35 0.00 1.54 0.00 0.00 0.00 0.00 2.05 0.00 0.00 0.68 0.00 0.00 0.00 0.83 0.00 5.63 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.80 1.26 0.00 1.06 0.00 0.00 0.00 1.61 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.99 K jcn_only_AA CG31368,F_chr3R_7709658_7714233 chr3R + chr3R_7708710_7708770 chr3R_7708710_7708749 chr3R_7708517_7708709;chr3R_7708771_7709251 0.00 0.00 2.50 1.82 0.00 4.55 2.44 1.89 4.11 NA 0.00 0.00 0.00 5.26 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 4.08 4.00 0.00 2.94 0.00 4.00 2.86 6.90 4.17 NA 0.00 1.85 0.00 0.00 1.64 3.70 0.00 5.13 NA 0.00 0.00 0.00 NA 0.00 0.00 3.12 0.00 0.00 3.92 0.00 NA NA 6.67 NA NA NA K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27707594_27759175 chr3R_27707594_27747354;chr3R_27747397_27757793;chr3R_27758337_27759175 chr3R_27747355_27747396;chr3R_27757794_27758336 chr3R_27707494_27707593;chr3R_27759176_27759203 10.00 NA NA NA NA NA NA NA 10.00 NA NA 11.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor Lasp,I_chr3L_16671761_16673911,R_chr3L_16672970_16673911,RI_chr3L_16674471_16704042 chr3L - chr3L_16673033_16673911;chr3L_16672574_16673911 chr3L_16672970_16673911 chr3L_16673912_16674011;chr3L_16671908_16672573 5.16 5.60 5.14 14.29 2.51 4.65 8.68 5.16 4.99 3.50 11.06 9.66 0.00 4.35 4.33 5.41 2.52 8.79 1.03 5.49 10.11 14.24 6.24 3.70 4.82 6.52 4.71 4.61 10.55 5.99 4.24 3.70 5.04 5.87 5.19 1.52 6.11 6.54 3.71 6.06 6.03 4.93 3.79 4.85 14.41 3.09 7.77 4.37 4.56 5.75 5.76 6.13 3.25 6.82 5.67 3.60 9.06 3.11 K jcn_only_AA Aut1,I_chr3L_18742839_18742896,RI_chr3L_18742839_18742911 chr3L + chr3L_18742839_18742896;chr3L_18742839_18742892 chr3L_18742839_18742911 chr3L_18742770_18742838;chr3L_18742912_18742977 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 1.12 0.99 0.00 0.00 0.00 1.37 6.90 0.87 1.45 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.65 0.00 0.00 0.00 0.00 0.79 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 1.32 0.68 0.87 K mutually_exclusive Rm62 chr3R - chr3R_1830849_1831671,chr3R_1831825_1833758 chr3R_1830849_1830927,chr3R_1831020_1833758 chr3R_1831672_1831824 chr3R_1830928_1831019 chr3R_1829739_1830848;chr3R_1833759_1834028 93.33 93.55 82.61 98.04 94.12 100.00 95.00 97.22 91.84 96.23 100.00 93.94 96.97 95.24 95.00 94.74 90.00 83.33 92.86 95.56 90.91 66.67 88.24 92.45 87.10 90.91 93.88 97.18 85.71 93.55 100.00 97.06 96.30 92.86 88.57 86.67 92.41 97.87 93.88 92.59 93.33 86.67 94.44 91.23 100.00 97.37 92.50 91.38 86.11 95.35 91.49 93.33 88.89 88.46 92.00 92.11 95.24 97.06 K intron_retention CG17265,CG3542,CG17219,RFI_chr2L_3030576_3030666,GABPI chr2L + chr2L_3025770_3025831 chr2L_3025769_3025770;chr2L_3025831_3025832 chr2L_3025689_3025769;chr2L_3025832_3026439 6.25 14.81 0.00 2.70 4.55 0.00 16.22 10.42 3.28 NA 0.00 10.81 0.00 6.25 9.52 4.88 0.00 0.00 4.35 6.25 10.53 16.00 15.15 8.57 36.36 31.03 18.52 NA 47.62 10.81 13.33 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 12.12 33.33 8.70 13.64 4.17 3.45 3.12 6.25 0.00 9.62 5.71 7.50 5.56 10.00 10.81 9.09 13.79 0.00 0.00 K alternative_donor mld,atl chr3R + chr3R_20451535_20457504 chr3R_20451677_20457504 chr3R_20457505_20457813;chr3R_20451524_20451534 6.25 9.09 4.55 7.41 NA 0.00 7.32 10.53 4.44 NA 10.53 6.25 10.00 4.35 10.53 4.76 0.00 7.69 4.76 8.00 0.00 8.33 5.26 5.56 7.69 5.00 10.00 7.14 20.00 3.12 3.12 6.67 8.33 3.23 5.56 8.33 8.70 10.00 NA 4.17 5.00 12.50 NA 8.00 4.55 4.00 0.00 2.86 4.44 6.67 9.38 10.53 6.25 5.56 7.14 5.26 6.67 0.00 K intron_retention RnpS1,I_chr3R_5377907_5378412,I_chr3R_5378314_5378412 chr3R + chr3R_5378145_5378412 chr3R_5378144_5378145;chr3R_5378412_5378413 chr3R_5377995_5378144;chr3R_5378413_5378512 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 1.08 2.86 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 5.56 NA 2.08 2.33 0.00 0.00 0.00 1.03 0.00 1.74 1.27 0.00 0.00 0.00 0.00 0.97 1.09 0.00 0.00 1.87 0.00 0.00 1.82 0.00 4.55 0.00 0.00 0.00 K intron_retention Sema-1b,RI_chr2R_13565425_13565874 chr2R - chr2R_13566288_13570897 chr2R_13566287_13566288;chr2R_13570897_13570898 chr2R_13565777_13566287;chr2R_13570898_13570979 0.00 NA NA 8.33 NA 0.00 6.25 4.35 4.55 NA NA 0.00 0.00 0.00 NA 3.45 0.00 NA 0.00 NA NA 0.00 12.50 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA 0.00 NA 4.35 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 7.14 NA NA NA K alternative_donor skd chr3L - chr3L_21018649_21020395;chr3L_21018649_21020285;chr3L_21018649_21019229 chr3L_21018649_21020239 chr3L_21018052_21018648;chr3L_21020396_21020501 8.71 NA NA 25.00 NA NA 9.09 16.67 18.18 NA NA 0.00 11.11 14.29 NA 11.76 NA NA NA 16.67 NA 0.00 0.00 NA NA NA 0.00 NA 20.00 0.00 NA NA 28.57 8.33 NA 0.00 NA NA NA 0.00 NA 8.33 0.00 25.00 NA NA NA 14.29 0.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention Spt6 chrX + chrX_6161979_6162139 chrX_6161978_6161979;chrX_6162139_6162140 chrX_6161820_6161978;chrX_6162140_6162224 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 5.88 0.00 0.00 NA 0.00 1.85 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 N jcn_only_AA CG18228 chr3R - chr3R_4087273_4087522;chr3R_4087322_4087522 chr3R_4087428_4087522 chr3R_4087523_4087669;chr3R_4087045_4087272 0.00 0.00 0.00 0.00 0.00 0.00 25.97 11.24 13.27 NA NA 19.12 0.00 0.00 0.00 13.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA 36.11 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 26.32 NA 0.00 0.00 0.00 0.00 0.00 K alternative_donor D1,RI_chr3R_5065631_5065691,I_chr3R_5065631_5065695,I_chr3R_5065631_5065697 chr3R - chr3R_5065631_5065767;chr3R_5065631_5065691;chr3R_5065631_5065695 chr3R_5065631_5065697 chr3R_5065531_5065630;chr3R_5065768_5065790 9.73 24.39 7.69 5.88 7.50 10.91 6.90 10.39 12.66 8.70 13.79 7.78 11.11 6.12 3.70 9.73 3.70 7.14 10.71 9.76 15.00 6.90 15.91 15.79 7.69 5.26 17.24 10.00 12.50 16.67 6.25 6.45 3.45 12.20 18.60 13.51 3.70 21.74 6.06 4.63 4.84 9.20 4.76 15.15 4.94 6.54 11.11 4.31 6.19 17.14 16.67 15.38 16.28 23.81 9.86 10.87 8.11 7.69 K intron_retention rok,RI_chrX_16526333_16526477 chrX - chrX_16521528_16521628 chrX_16521527_16521528;chrX_16521628_16521629 chrX_16521506_16521527;chrX_16521629_16521903 0.00 0.00 0.00 4.76 0.00 0.00 2.27 6.12 3.23 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 6.25 0.00 5.41 5.26 0.00 5.00 0.00 14.81 13.04 15.15 8.33 0.00 17.65 0.00 0.00 0.00 0.00 3.12 0.00 5.71 0.00 0.00 3.57 0.00 5.26 NA 3.70 0.00 0.00 5.26 0.00 3.85 0.00 0.00 0.00 0.00 4.35 0.00 7.69 K alternative_acceptor CG32813 chrX + chrX_1284091_1284308 chrX_1284091_1284281 chrX_1283634_1284090;chrX_1284309_1286331 2.70 NA NA 6.25 NA 5.88 7.14 NA 3.85 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA 0.00 NA 11.76 NA 2.70 4.35 NA 0.00 5.36 5.26 0.00 25.00 2.86 4.76 7.69 0.00 5.56 3.85 NA 4.76 0.00 0.00 6.67 2.63 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 5.26 3.23 K alternative_acceptor JhI-26,I_chr2R_12177114_12177266 chr2R + chr2R_12177114_12177456 chr2R_12177114_12177266 chr2R_12177014_12177113;chr2R_12177457_12178256 0.00 0.00 3.12 0.00 0.00 0.00 1.64 1.30 0.00 0.00 0.00 0.00 2.86 0.00 0.00 1.82 0.00 6.67 0.00 1.85 0.00 1.75 0.00 0.00 0.00 0.00 1.64 0.00 1.85 0.00 0.00 0.00 0.00 3.51 0.00 0.00 0.00 0.00 0.00 2.60 1.89 0.00 0.00 0.00 0.00 1.67 0.00 1.79 1.85 2.94 2.44 0.00 NA 0.00 2.70 0.00 0.00 0.00 K intron_retention SrpRbeta chr3L - chr3L_8713053_8713137 chr3L_8713052_8713053;chr3L_8713137_8713138 chr3L_8712746_8713052;chr3L_8713138_8713264 1.89 0.00 1.41 1.43 0.00 0.00 0.00 1.03 3.26 0.00 2.27 2.50 0.00 3.51 3.49 5.71 3.92 3.77 2.82 1.52 0.00 0.00 3.80 0.00 6.52 2.70 0.00 2.08 0.00 2.33 4.08 0.00 3.57 3.16 0.00 1.92 1.96 1.79 0.00 1.98 0.00 2.42 2.17 0.00 0.00 4.00 1.61 1.27 2.94 3.64 3.06 3.33 0.00 0.00 5.26 0.00 1.22 1.89 K intron_retention CG32803,I_chrX_1795648_1795700,RI_chrX_1795648_1795745,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1795648_1795832 chrX_1795647_1795648;chrX_1795832_1795833 chrX_1795548_1795647;chrX_1795833_1795845 5.13 8.00 1.64 7.14 3.85 4.65 5.71 6.35 3.92 6.25 4.00 7.00 2.33 4.44 3.85 6.67 2.94 7.69 5.26 4.17 3.92 8.00 5.06 7.25 8.89 6.98 7.14 20.83 20.00 4.65 2.35 2.70 0.00 2.63 5.88 5.13 9.52 8.77 4.81 5.48 2.56 6.98 0.00 6.56 5.08 4.71 5.08 7.89 4.65 7.27 8.97 4.55 6.25 6.33 3.23 4.76 7.59 0.00 K intron_retention CG14322 chr3R + chr3R_13494718_13494777 chr3R_13494717_13494718;chr3R_13494777_13494778 chr3R_13494526_13494717;chr3R_13494778_13494834 0.00 0.00 NA 9.09 NA NA NA NA 0.00 NA NA NA NA NA NA 11.76 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 4.55 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 K intron_retention Magi,I_chr2R_17020420_17029043,I_chr2R_17026738_17029359 chr2R - chr2R_17018096_17018153 chr2R_17018095_17018096;chr2R_17018153_17018154 chr2R_17017870_17018095;chr2R_17018154_17020167 0.00 0.00 0.00 4.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 5.45 6.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 K intron_retention chinmo chr2L + chr2L_1695377_1695438 chr2L_1695376_1695377;chr2L_1695438_1695439 chr2L_1694547_1695376;chr2L_1695439_1695586 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.68 0.00 0.00 0.90 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N cassette ire-1,FI_chr3R_15689914_15690042 chr3R - chr3R_15683407_15686607 chr3R_15683407_15686212;chr3R_15686484_15686607 chr3R_15686213_15686483 chr3R_15682963_15683406;chr3R_15686608_15687013 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 84.09 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor osa,R_chr3R_13525411_13533475,I_chr3R_13525426_13525859 chr3R - chr3R_13525426_13525859;chr3R_13525426_13533492 chr3R_13525426_13525849 chr3R_13525326_13525425;chr3R_13533493_13533575 1.53 0.81 1.67 2.99 1.30 1.61 2.38 3.03 1.63 0.85 1.64 1.08 2.33 1.72 1.25 2.44 1.54 1.69 1.75 1.53 1.52 0.85 0.51 0.62 0.88 1.67 1.04 2.02 1.90 0.45 1.54 2.27 0.55 2.15 0.91 0.79 0.30 0.49 0.56 1.40 3.03 1.09 1.96 1.41 1.25 1.89 1.54 1.64 1.31 1.08 0.86 1.33 1.59 0.00 1.39 2.13 4.76 4.17 K intron_retention CG1513,I_chr2R_5778649_5778739 chr2R - chr2R_5771712_5772126 chr2R_5771711_5771712;chr2R_5772126_5772127 chr2R_5771590_5771711;chr2R_5772127_5772213 0.00 0.00 0.00 2.11 0.00 0.00 7.37 0.00 1.22 0.00 0.00 3.03 0.00 0.00 0.00 0.00 1.47 3.51 0.00 0.00 0.00 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.52 1.83 2.00 10.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 K jcn_only_AD Hairless chr3R + chr3R_16447945_16448305;chr3R_16448221_16448305 chr3R_16447850_16448305 chr3R_16448306_16449020;chr3R_16447843_16447849 14.29 21.74 19.05 11.32 NA NA 14.29 17.65 19.12 16.13 18.52 10.00 22.58 14.29 6.25 10.34 19.44 NA 5.88 13.73 23.08 13.46 29.41 20.00 10.00 27.27 13.04 21.43 10.00 8.33 NA NA 10.71 19.64 NA NA 13.16 NA 18.92 10.71 NA 16.36 NA 31.43 NA NA NA 7.69 4.65 NA 22.22 8.00 NA NA 25.93 NA NA 5.00 K intron_retention CG12703 chrX + chrX_19645202_19645380 chrX_19645201_19645202;chrX_19645380_19645381 chrX_19644833_19645201;chrX_19645381_19645579 100.00 100.00 100.00 96.43 90.00 100.00 100.00 96.00 96.67 100.00 NA 96.43 100.00 100.00 100.00 95.00 100.00 100.00 NA 100.00 100.00 100.00 94.12 87.50 100.00 NA 92.86 100.00 100.00 100.00 100.00 94.44 100.00 94.44 100.00 NA 100.00 91.67 100.00 96.67 100.00 96.97 NA 100.00 100.00 100.00 92.31 97.44 96.55 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814894;chr2R_2815657_2816013;chr2R_2816342_2816577;chr2R_2816779_2817753 chr2R_2814895_2815656;chr2R_2816014_2816341;chr2R_2816578_2816778 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention orb2,I_chr3L_8942860_8947477 chr3L - chr3L_8940990_8941982 chr3L_8940989_8940990;chr3L_8941982_8941983 chr3L_8940928_8940989;chr3L_8941983_8942380 2.94 4.26 5.08 6.52 0.00 2.70 2.86 5.00 4.44 0.00 0.00 4.59 0.00 4.55 1.82 2.13 0.00 4.76 6.12 3.88 2.70 5.71 2.15 4.82 5.77 0.00 1.94 6.58 5.63 2.63 8.00 6.90 5.97 3.12 5.00 1.22 0.00 0.00 1.94 2.44 1.75 6.02 0.00 0.00 2.13 2.94 3.17 3.92 6.85 2.06 6.45 0.00 2.50 1.72 6.45 0.00 6.25 11.54 N mutually_exclusive CG17273,I_chr3R_16652066_16655997,REI_chr3R_16652421_16653701,I_chr3R_16653805_16654088 chr3R - chr3R_16651716_16653701,chr3R_16653805_16655997 chr3R_16651716_16651785,chr3R_16652066_16655997 chr3R_16653702_16653804 chr3R_16651786_16652065 chr3R_16651355_16651715;chr3R_16655998_16656097 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA 29.41 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 K alternative_donor Lerp chr3R - chr3R_22688433_22688824;chr3R_22688433_22688796;chr3R_22688433_22688494 chr3R_22688433_22688772 chr3R_22688359_22688432;chr3R_22688825_22688828 0.00 NA 0.00 28.57 NA NA 25.00 0.00 0.00 NA NA 0.00 NA 33.33 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 0.00 NA NA NA NA NA 20.00 NA NA NA NA NA NA NA 33.33 0.00 NA NA NA NA NA 42.86 NA NA NA K jcn_only_AA mRpS30,I_chrX_15680663_15680821 chrX + chrX_15680663_15680826 chrX_15680663_15680821 chrX_15680563_15680662;chrX_15680827_15680921 0.00 0.86 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 1.30 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 1.00 0.93 0.00 0.00 5.68 0.00 0.75 0.00 0.00 0.91 0.53 0.00 0.00 1.31 0.00 0.60 0.00 1.40 0.00 0.78 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 K alternative_donor CG14980,Ubi-p63E chr3L - chr3L_3898798_3898870 chr3L_3898798_3898861 chr3L_3898004_3898797;chr3L_3898871_3898939 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 87.50 NA NA NA 100.00 NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 90.00 NA 100.00 NA NA NA 100.00 NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA K intron_retention CG18213 chr3R - chr3R_12865407_12865459 chr3R_12865406_12865407;chr3R_12865459_12865460 chr3R_12865340_12865406;chr3R_12865460_12865528 15.53 NA 10.53 26.32 NA NA 26.09 16.67 15.00 10.53 19.05 14.29 10.00 9.09 15.00 17.24 11.76 5.88 12.50 15.91 NA 13.04 22.58 19.35 43.75 36.84 15.15 31.03 41.18 11.76 23.08 NA NA 18.92 NA 29.41 8.33 0.00 22.22 16.00 NA 9.38 6.67 24.14 NA NA NA NA 19.44 12.50 23.81 0.00 NA NA 0.00 NA NA NA K intron_retention Rab7,CG33108,LSm3 chr3R + chr3R_19822261_19822313 chr3R_19822260_19822261;chr3R_19822313_19822314 chr3R_19822061_19822260;chr3R_19822314_19822427 0.00 0.00 0.00 2.86 0.00 0.00 1.61 0.00 2.11 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 3.23 0.00 1.47 0.00 11.11 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 3.23 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9044 chr2L + chr2L_5952628_5952988 chr2L_5952627_5952628;chr2L_5952988_5952989 chr2L_5952445_5952627;chr2L_5952989_5953057 0.00 0.00 0.00 10.71 0.00 NA NA 8.89 2.70 NA 0.00 0.00 7.41 NA 9.52 0.00 9.09 NA 8.70 0.00 NA NA 0.00 NA 0.00 NA NA 6.67 NA NA 0.00 0.00 0.00 6.25 10.53 0.00 0.00 NA 0.00 6.67 NA 0.00 NA NA NA 0.00 13.33 9.38 7.41 0.00 NA NA 13.33 6.67 0.00 0.00 NA 0.00 K intron_retention Marf,I_chrX_6263726_6263783 chrX + chrX_6263726_6263825 chrX_6263725_6263726;chrX_6263825_6263826 chrX_6263626_6263725;chrX_6263826_6263883 1.89 0.00 5.13 5.77 0.00 0.00 5.56 5.26 0.00 0.00 0.00 5.80 6.25 0.00 5.26 13.64 8.00 0.00 10.81 4.10 8.33 1.05 3.90 2.41 0.00 4.00 4.65 6.00 0.00 0.00 0.00 2.22 0.00 0.00 3.33 0.00 3.50 11.76 1.54 1.23 0.00 4.05 0.00 0.00 2.78 2.00 2.04 0.00 4.65 0.00 4.29 0.00 1.89 0.00 2.27 0.00 0.00 0.00 K alternative_donor CG32809,I_chrX_1585391_1585462,RI_chrX_1585391_1586329,F_chrX_1585391_1586404,RI_chrX_1585391_1586471,I_chrX_1589508_1589564 chrX - chrX_1585391_1586408 chrX_1585391_1585462 chrX_1585291_1585390;chrX_1586409_1586429 75.00 57.14 75.00 50.00 100.00 100.00 83.33 100.00 90.91 80.00 50.00 76.92 83.33 100.00 57.14 88.89 100.00 75.00 71.43 72.73 50.00 100.00 50.00 66.67 80.00 100.00 85.71 66.67 80.00 50.00 88.89 66.67 83.33 66.67 55.56 62.50 50.00 55.56 85.71 90.91 75.00 72.73 100.00 100.00 50.00 80.00 66.67 100.00 66.67 80.00 71.43 75.00 66.67 NA 85.71 66.67 66.67 66.67 K alternative_acceptor I_chr3L_834336_834491,CG13887,Gr61a chr3L + chr3L_837946_838012;chr3L_837946_838021 chr3L_837946_838048 chr3L_837877_837945;chr3L_838049_838624 81.08 81.82 79.17 81.13 88.10 80.85 80.61 84.30 86.57 85.71 80.95 78.65 81.08 75.00 64.71 86.52 80.00 83.33 85.71 84.03 77.78 85.07 69.23 73.91 51.11 50.94 39.47 76.92 87.50 88.89 74.60 92.06 90.77 85.34 69.57 58.54 87.88 75.00 70.83 85.98 84.62 86.49 84.62 82.61 95.97 89.81 59.26 93.86 88.89 69.05 57.89 78.69 64.29 45.45 80.49 75.00 87.04 91.82 K intron_retention CG1516,I_chr2R_5743716_5743899,I_chr2R_5746990_5747874,RI_chr2R_5752988_5757801 chr2R - chr2R_5740711_5741187 chr2R_5740710_5740711;chr2R_5741187_5741188 chr2R_5740053_5740710;chr2R_5741188_5741235 4.63 NA 9.09 0.00 0.00 NA NA 25.00 0.00 0.00 NA 9.09 NA 5.56 7.69 7.14 0.00 0.00 0.00 9.09 NA NA NA NA NA 10.00 NA NA NA NA 9.52 NA 0.00 3.70 NA NA NA 0.00 NA NA NA 10.00 11.76 NA NA 0.00 0.00 NA 9.09 NA 0.00 NA NA NA 6.67 NA NA NA K jcn_only_AD Tom20,I_chr3L_19994387_19994460,RI_chr3L_19994894_19994949,RI_chr3L_19995983_19996407 chr3L + chr3L_19994391_19994460 chr3L_19994397_19994460 chr3L_19994461_19994529;chr3L_19994328_19994390 99.60 99.14 99.22 99.46 98.19 100.00 100.00 99.76 100.00 100.00 100.00 99.60 99.00 100.00 100.00 99.31 100.00 98.90 100.00 99.57 100.00 100.00 99.09 98.90 98.63 100.00 100.00 98.01 100.00 98.70 99.56 100.00 100.00 99.47 100.00 99.40 99.50 99.11 99.21 98.88 99.27 99.80 100.00 99.54 100.00 99.35 100.00 98.74 99.22 99.69 99.65 100.00 100.00 99.60 100.00 100.00 98.92 98.94 K intron_retention Hr39,I_chr2L_21256047_21256260 chr2L + chr2L_21257049_21257102 chr2L_21257048_21257049;chr2L_21257102_21257103 chr2L_21256946_21257048;chr2L_21257103_21257250 6.67 0.00 6.67 16.98 0.00 6.90 15.38 10.00 14.55 0.00 NA 8.16 0.00 12.50 7.14 3.23 4.55 0.00 12.00 8.45 NA NA 10.81 7.69 0.00 0.00 20.69 40.00 20.00 10.53 7.69 NA 4.76 11.90 5.88 33.33 0.00 0.00 0.00 11.43 NA 15.52 0.00 4.00 NA 0.00 5.56 6.67 9.62 0.00 2.78 0.00 0.00 6.67 11.11 4.55 NA 0.00 N alternative_donor CG10353,I_chrX_11775936_11778830,I_chrX_11778617_11778830,RI_chrX_11780885_11780988 chrX - chrX_11775936_11777234;chrX_11775936_11777220;chrX_11775936_11777133;chrX_11775936_11776142 chrX_11775936_11776058 chrX_11775836_11775935;chrX_11777235_11777654 3.23 3.33 2.94 2.50 0.00 3.23 4.00 2.33 1.09 33.33 0.00 1.67 4.35 3.57 2.50 2.04 3.45 5.71 0.00 2.70 0.00 2.63 2.44 3.33 4.00 0.00 5.41 5.88 3.70 0.00 14.29 5.56 2.27 1.79 0.00 2.70 12.24 3.33 3.03 11.54 0.00 3.28 0.00 15.15 4.35 2.86 5.56 10.34 1.52 4.76 8.33 0.00 5.26 0.00 3.23 4.35 8.70 2.38 K intron_retention CG32529 chrX + chrX_19795522_19795900 chrX_19795521_19795522;chrX_19795900_19795901 chrX_19794649_19795521;chrX_19795901_19798251 1.87 2.48 2.19 1.05 1.20 1.97 3.35 2.07 1.87 1.08 4.52 2.01 3.11 1.92 2.47 3.41 0.79 2.00 2.17 2.07 4.20 16.44 2.94 2.96 1.18 1.25 2.52 2.55 2.92 2.16 1.06 0.00 1.85 1.33 2.50 2.29 1.14 0.41 1.80 0.81 2.44 1.60 0.00 0.95 1.72 0.00 1.83 1.35 1.47 0.79 2.88 0.64 0.00 2.50 1.10 1.52 2.91 0.00 K cassette B4,REI_chr2L_13509793_13534906,EI_chr2L_13513471_13534906,I_chr2L_13513474_13549131,I_chr2L_13547304_13549131 chr2L - chr2L_13509793_13534906 chr2L_13509793_13512959;chr2L_13513474_13534906 chr2L_13512960_13513473 chr2L_13509741_13509792;chr2L_13534907_13535006 99.03 98.70 98.74 97.47 99.29 98.57 98.51 95.51 98.41 100.00 99.24 100.00 98.68 99.09 97.44 99.17 99.03 99.28 99.15 98.93 100.00 99.27 97.82 98.68 97.40 99.10 98.35 98.71 99.40 99.69 100.00 98.84 100.00 98.58 99.51 99.53 99.06 98.99 99.70 98.87 99.56 99.70 99.04 98.21 99.28 98.97 98.95 99.72 98.80 98.86 98.93 97.30 99.55 99.21 99.30 97.45 98.23 99.73 K intron_retention l(2)08717 chr2R - chr2R_14685161_14685220 chr2R_14685160_14685161;chr2R_14685220_14685221 chr2R_14684483_14685160;chr2R_14685221_14686297 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.02 0.00 2.04 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11255 chr3L - chr3L_13014658_13015537 chr3L_13014657_13014658;chr3L_13015537_13015538 chr3L_13014174_13014657;chr3L_13015538_13015903 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24347423_24347536 chr3R_24347422_24347423;chr3R_24347536_24347537 chr3R_24347264_24347422;chr3R_24347537_24347953 1.71 1.85 2.27 7.78 0.00 0.00 1.35 2.13 1.71 3.85 4.00 0.00 7.41 4.44 0.00 0.00 0.00 0.00 1.72 2.03 0.00 1.39 5.41 4.23 4.00 2.50 3.77 NA 0.00 2.38 6.25 3.12 0.00 5.80 0.00 2.83 0.00 0.00 3.95 1.64 3.92 0.00 0.00 0.00 0.00 1.08 1.96 0.00 1.94 0.00 7.35 0.00 3.23 3.45 0.00 0.00 3.08 0.00 K jcn_only_AA CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20824494_20825664;chr2L_20824494_20826632;chr2L_20824494_20825470 chr2L_20824494_20825271 chr2L_20824482_20824493 65.00 NA NA 59.09 NA NA NA 52.00 NA NA NA NA NA NA NA 72.73 NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.77 NA NA 88.00 NA NA NA 65.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG2219,I_chr4_199813_199889,RI_chr4_202143_202194 chr4 - chr4_199463_199562 chr4_199507_199562 chr4_199563_199629;chr4_199407_199462 91.51 86.49 92.54 91.51 87.18 97.56 97.67 92.73 93.25 100.00 89.47 86.40 93.15 93.02 90.00 86.32 91.94 86.05 89.23 93.10 100.00 94.44 84.62 92.96 91.67 89.74 97.10 97.30 100.00 90.16 84.13 93.18 89.06 89.69 95.74 86.27 86.49 92.98 87.27 98.67 93.62 88.29 84.31 90.18 92.11 87.65 91.03 94.64 87.50 92.31 91.84 91.07 89.36 87.50 94.52 94.12 85.37 89.29 K jcn_only_AD CG7222 chr2R + chr2R_6701242_6701535;chr2R_6700970_6701535 chr2R_6701240_6701535 chr2R_6701536_6701719;chr2R_6700958_6700969 3.85 6.67 5.33 2.26 10.00 1.96 7.62 2.76 5.93 6.45 2.50 3.15 1.72 7.46 11.11 7.55 1.79 4.69 5.49 2.11 1.89 0.00 4.65 5.97 1.82 4.94 2.94 0.00 4.88 4.17 4.29 0.00 6.67 3.40 5.88 0.00 2.78 6.12 1.59 4.05 3.12 6.92 1.64 0.00 3.23 2.56 5.08 0.00 4.79 5.26 2.90 3.77 9.09 6.25 3.85 1.92 3.08 6.35 K alternative_donor Mct1 chrX + chrX_2089096_2092664;chrX_2089073_2092664 chrX_2088826_2092664 chrX_2092665_2092972;chrX_2088634_2088825 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 12.50 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 10.00 0.00 0.00 2.94 0.00 K alternative_acceptor RpLP1,I_chr2L_420147_420282,I_chr2L_420147_420300,E_chr2L_420151_420297,I_chr2L_420231_420291,E_chr2L_422193_422242 chr2L + chr2L_420147_420300 chr2L_420147_420291 chr2L_420131_420146;chr2L_420301_420382 100.00 100.00 100.00 99.99 100.00 99.97 100.00 99.98 100.00 100.00 100.00 99.96 100.00 99.97 99.98 100.00 100.00 99.97 100.00 100.00 99.97 100.00 99.99 100.00 99.98 99.97 99.99 100.00 99.98 99.98 100.00 100.00 100.00 100.00 99.97 100.00 100.00 100.00 99.99 99.98 100.00 100.00 99.97 99.98 100.00 99.98 99.99 100.00 100.00 100.00 100.00 100.00 99.99 99.99 99.98 100.00 99.99 99.98 K cassette CaMKII,I_chr4_1059085_1060638,I_chr4_1059085_1065781,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1059085_1064093;chr4_1059061_1064093;chr4_1059064_1065781;chr4_1059085_1065781;chr4_1059064_1064093;chr4_1059061_1065781 chr4_1059085_1060638,chr4_1059061_1060638,chr4_1059064_1060638;chr4_1060705_1064093,chr4_1060705_1065781 chr4_1060639_1060704 chr4_1059054_1059060;chr4_1065782_1065874 24.24 32.00 21.95 42.67 33.33 22.58 22.67 20.78 39.19 NA 21.05 25.68 17.39 20.93 19.51 17.86 39.39 11.11 27.12 17.48 11.76 66.67 35.29 42.11 NA 21.88 40.00 28.57 5.26 26.92 19.44 17.95 18.52 21.74 31.03 32.00 50.00 21.43 36.84 31.82 20.00 27.12 17.78 27.59 20.69 30.00 33.33 24.32 26.04 32.00 32.35 23.08 21.74 23.08 24.00 26.67 24.24 20.00 K alternative_acceptor Aef1 chr3L + chr3L_21428231_21428454 chr3L_21428231_21428292 chr3L_21428125_21428230;chr3L_21428455_21429109 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor BtbVII,I_chr3L_3150858_3150927,I_chr3L_3151185_3151263 chr3L + chr3L_3148688_3149627;chr3L_3148738_3149627 chr3L_3148748_3149627 chr3L_3149628_3150153;chr3L_3148679_3148687 7.14 NA NA 27.27 NA NA 18.18 7.69 NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA 5.56 6.25 NA NA NA NA NA NA NA NA 0.00 K jcn_only_AD CG10445 chr3R - chr3R_3745524_3745586 chr3R_3745524_3745583 chr3R_3745126_3745523;chr3R_3745587_3745843 95.12 NA NA NA NA NA 93.94 100.00 75.00 NA NA 86.36 NA NA NA NA NA NA NA 95.65 NA 96.00 91.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.24 NA 95.24 NA NA NA NA NA NA NA NA 95.00 NA NA NA NA NA NA NA K intron_retention CG9855,RI_chr3R_222522_222581,RI_chr3R_222525_222604,I_chr3R_223384_223429 chr3R - chr3R_222522_222581 chr3R_222521_222522;chr3R_222581_222582 chr3R_222457_222521;chr3R_222582_222650 90.45 NA NA 90.91 NA 100.00 NA NA 92.31 NA NA NA NA 100.00 81.82 NA NA NA NA 90.91 NA 80.00 NA 88.89 NA NA 100.00 NA 90.00 NA 100.00 NA NA NA NA NA NA NA NA 69.23 90.00 NA NA NA 86.67 92.86 NA 72.22 90.91 80.00 NA NA NA NA NA NA 100.00 75.00 K intron_retention CG31169,I_chr3R_18209085_18209133 chr3R + chr3R_18209081_18209133 chr3R_18209080_18209081;chr3R_18209133_18209134 chr3R_18209073_18209080;chr3R_18209134_18209201 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor Gs2 chrX + chrX_11317106_11318314 chrX_11317106_11318302 chrX_11317037_11317105;chrX_11318315_11318487 76.39 NA NA 77.78 NA NA 77.78 NA NA NA NA 75.00 NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 55.56 NA NA NA NA NA NA NA 77.78 NA NA NA NA NA NA NA NA K jcn_only_AA Ucrh,CREFI_chr3LHet_606442_607073 chr3LHet + chr3LHet_606442_607073 chr3LHet_606442_606499 chr3LHet_606350_606441;chr3LHet_607074_607088 99.16 99.63 99.47 99.18 100.00 98.37 98.33 98.82 99.08 100.00 100.00 96.06 100.00 97.20 98.53 98.97 100.00 100.00 100.00 99.76 100.00 90.00 97.62 99.54 96.03 92.22 99.18 98.48 95.00 100.00 99.40 96.92 98.31 98.65 98.75 99.47 100.00 100.00 98.30 100.00 97.78 98.18 98.01 98.41 98.94 99.23 99.39 98.72 98.23 99.62 99.07 99.52 99.24 99.40 98.66 99.16 99.63 99.23 K intron_retention CG2950,I_chr2L_4844647_4845086,I_chr2L_4844952_4845086 chr2L - chr2L_4845576_4845641 chr2L_4845575_4845576;chr2L_4845641_4845642 chr2L_4845254_4845575;chr2L_4845642_4846216 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 3.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG6689,RI_chr3R_7044164_7044221 chr3R - chr3R_7044164_7044234 chr3R_7044164_7044221 chr3R_7044064_7044163;chr3R_7044235_7044321 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 2.63 NA 0.00 3.12 0.00 0.00 0.00 NA 0.00 NA 5.00 2.94 NA 2.94 0.00 0.00 0.00 0.00 6.90 0.00 0.00 0.00 4.55 0.00 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 3.45 0.00 11.76 0.00 0.00 0.00 NA 0.00 0.00 5.56 0.00 0.00 4.17 K alternative_acceptor CG6701,RI_chr2R_9866395_9866446,RI_chr2R_9866896_9867532 chr2R - chr2R_9866395_9866446;chr2R_9865355_9866446 chr2R_9865335_9866446 chr2R_9866447_9866546;chr2R_9865150_9865334 0.00 1.75 0.00 0.87 0.00 0.00 0.83 0.76 0.00 2.78 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 1.23 0.00 1.85 0.00 0.00 0.00 2.44 0.00 1.49 0.00 0.00 1.79 4.82 0.00 1.75 0.91 2.44 0.00 1.45 1.92 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 1.79 0.00 0.00 0.00 1.14 4.35 0.00 0.00 K intron_retention l(2)37Cc,l(2)37Cb chr2L - chr2L_19122818_19123120 chr2L_19122817_19122818;chr2L_19123120_19123121 chr2L_19122040_19122817;chr2L_19123121_19123556 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.32 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.15 0.69 K intron_retention Bzd chrX - chrX_2501230_2501294 chrX_2501229_2501230;chrX_2501294_2501295 chrX_2500709_2501229;chrX_2501295_2501757 0.00 0.00 0.00 0.00 0.00 0.00 4.17 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789751_9789790 chr2L_9789750_9789751;chr2L_9789790_9789791 chr2L_9789741_9789750;chr2L_9789791_9789832 14.29 NA NA 20.00 NA NA 12.50 30.77 35.29 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD woc,I_chr3R_23089174_23089688,I_chr3R_23089174_23089695,I_chr3R_23096096_23096561 chr3R - chr3R_23089174_23089688;chr3R_23089174_23089695 chr3R_23089174_23089498 chr3R_23089074_23089173;chr3R_23089696_23089772 93.10 90.48 81.82 85.37 91.30 92.59 89.47 92.16 91.18 NA 95.24 95.12 86.21 100.00 96.77 93.10 96.67 85.19 86.67 84.00 NA 67.86 91.43 95.65 100.00 90.91 100.00 100.00 NA NA 97.44 NA 97.14 94.12 NA 100.00 96.77 88.46 NA 91.43 NA 92.86 100.00 95.83 NA 95.45 NA 82.76 96.00 NA 100.00 100.00 NA NA 86.84 NA NA NA K intron_retention CG16817 chr3R + chr3R_5504371_5504441 chr3R_5504370_5504371;chr3R_5504441_5504442 chr3R_5504284_5504370;chr3R_5504442_5504698 1.27 1.02 1.05 1.23 1.23 1.17 1.16 1.05 1.27 0.47 0.77 1.57 1.08 1.18 1.44 1.26 0.97 0.66 1.17 1.09 1.10 2.54 1.83 1.00 1.30 0.91 1.72 2.15 2.54 1.74 1.19 1.90 1.40 1.19 2.10 1.78 1.83 1.21 1.29 1.68 1.38 0.83 1.44 1.32 2.12 1.52 1.09 1.69 1.48 1.12 1.45 1.82 1.20 1.63 0.61 1.50 0.97 1.95 K jcn_only_AA kel,I_chr2L_18134827_18137476,I_chr2L_18135502_18135573 chr2L - chr2L_18134827_18135573 chr2L_18135502_18135573 chr2L_18135574_18135673;chr2L_18134727_18134826 0.00 4.55 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 6.45 0.00 0.00 0.00 NA 0.00 2.78 0.00 0.00 NA 0.00 NA 3.12 0.00 0.00 0.00 0.00 0.00 0.00 4.17 NA 0.00 3.33 0.00 NA NA NA NA 0.00 NA 0.00 4.76 NA NA 0.00 NA NA NA K intron_retention RluA-2,I_chr2L_10480906_10481097 chr2L + chr2L_10481571_10481621 chr2L_10481570_10481571;chr2L_10481621_10481622 chr2L_10481509_10481570;chr2L_10481622_10481707 13.04 NA NA 13.04 NA NA 23.81 14.29 5.56 NA NA 9.09 NA NA NA 0.00 NA NA 25.00 7.41 NA 30.77 NA NA NA NA 13.33 NA 31.25 NA 19.05 NA NA 20.00 NA NA NA NA NA 11.76 14.29 8.70 NA NA 7.69 10.53 22.22 10.53 5.56 NA 0.00 NA 23.53 NA 0.00 NA NA 17.39 K intron_retention C1GalTA,I_chr2L_8945896_8950977 chr2L - chr2L_8945535_8950977 chr2L_8945534_8945535;chr2L_8950977_8950978 chr2L_8945358_8945534;chr2L_8950978_8951077 11.25 16.28 14.71 9.18 20.00 13.04 13.16 13.01 19.08 15.00 10.34 8.24 8.22 9.23 16.92 11.25 10.20 14.29 15.07 10.84 18.18 8.33 3.12 11.11 4.00 11.69 17.50 16.67 NA 6.06 4.00 NA 4.44 13.73 5.71 15.38 22.22 9.09 23.53 8.93 4.88 16.00 11.27 19.23 0.00 4.17 0.00 5.56 12.28 13.64 11.11 22.22 3.45 9.09 14.63 11.76 10.71 0.00 K intron_retention CG32138 chr3L + chr3L_14058259_14058715 chr3L_14058258_14058259;chr3L_14058715_14058716 chr3L_14058172_14058258;chr3L_14058716_14060368 2.65 1.99 2.90 3.44 2.25 1.18 3.74 1.01 2.09 3.31 1.72 3.66 5.00 3.36 2.27 3.11 2.16 2.03 2.99 2.65 1.66 6.81 3.69 1.93 3.78 3.05 3.83 4.71 3.62 3.43 2.55 2.44 4.27 1.15 3.82 8.28 2.64 1.98 1.94 3.12 5.19 2.00 1.50 3.05 2.41 3.48 2.08 4.22 2.29 3.48 1.47 4.67 2.15 3.96 2.38 2.61 0.00 1.72 K alternative_acceptor TMS1 chr3L + chr3L_16407594_16407905;chr3L_16407594_16407914;chr3L_16407594_16407893;chr3L_16407594_16407902 chr3L_16407594_16407920 chr3L_16407384_16407593;chr3L_16407921_16408056 2.37 0.00 3.15 1.46 3.96 2.70 1.96 3.18 1.82 2.73 2.83 3.08 1.98 1.20 0.83 0.97 2.27 2.04 4.12 2.99 1.96 1.71 1.12 2.45 1.87 2.06 2.47 4.40 1.79 2.74 0.85 1.92 1.69 2.89 2.86 4.35 3.86 2.60 2.04 2.06 2.62 2.12 3.49 2.37 3.00 1.41 1.97 4.69 1.97 2.53 2.86 1.22 1.03 0.96 3.92 2.50 2.58 4.63 K jcn_only_AD larp,F_chr3R_24151542_24153876,I_chr3R_24160430_24160932,I_chr3R_24160430_24160971,RI_chr3R_24160430_24161527 chr3R - chr3R_24160430_24161729;chr3R_24160430_24160932;chr3R_24160430_24160971;chr3R_24160430_24160979;chr3R_24160430_24161939;chr3R_24160430_24161527 chr3R_24160430_24160975 chr3R_24160330_24160429;chr3R_24161940_24162125 12.61 3.51 10.07 7.08 10.48 10.89 7.44 8.07 10.77 12.36 9.20 12.92 7.26 7.20 9.09 8.47 12.50 12.40 10.43 12.79 9.26 13.97 13.79 13.77 16.09 11.43 10.19 6.12 21.43 15.97 11.19 21.74 11.48 12.61 12.39 18.49 15.49 13.21 15.67 17.41 12.35 13.36 14.39 21.32 13.64 18.18 8.89 17.54 15.38 17.31 15.98 14.43 18.18 17.31 13.07 9.52 7.41 18.79 K alternative_acceptor Smc5,I_chr3L_21566234_21566275 chr3L + chr3L_21566234_21566289 chr3L_21566234_21566275 chr3L_21566134_21566233;chr3L_21566290_21566375 4.17 3.92 2.00 2.90 5.41 2.86 9.09 2.90 5.68 11.11 5.71 4.17 5.41 0.00 2.44 5.08 2.86 2.13 1.89 5.38 7.14 0.00 4.17 3.51 14.29 10.81 1.61 0.00 8.33 7.14 5.66 0.00 5.00 3.28 10.00 7.14 2.94 2.13 2.78 5.36 25.00 5.13 3.57 2.38 6.25 2.04 4.88 6.25 6.25 5.00 3.70 7.32 2.38 2.94 6.67 5.36 3.49 0.00 K intron_retention BtbVII,I_chr3L_3150858_3150927,I_chr3L_3151185_3151263 chr3L + chr3L_3151173_3151263 chr3L_3151172_3151173;chr3L_3151263_3151264 chr3L_3151085_3151172;chr3L_3151264_3151363 0.00 0.00 1.75 0.83 1.27 0.93 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.98 0.00 0.00 0.00 1.21 0.00 0.75 1.61 1.13 0.00 2.82 2.33 3.64 1.76 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.83 1.13 0.00 0.00 0.00 0.47 0.00 0.00 0.00 1.28 0.00 0.36 0.99 0.85 0.50 0.00 0.72 0.00 0.00 0.00 0.00 0.00 K intron_retention l(2)NC136,I_chr2R_1545723_1546024 chr2R - chr2R_1545723_1548105 chr2R_1545722_1545723;chr2R_1548105_1548106 chr2R_1545623_1545722;chr2R_1548106_1548252 0.00 0.00 0.00 0.39 0.00 0.00 0.45 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N cassette CG18659,E_chr2R_5011363_5019110,I_chr2R_5016147_5016997 chr2R - chr2R_5016147_5018987 chr2R_5016147_5018668;chr2R_5018864_5018987 chr2R_5018669_5018863 chr2R_5016047_5016146;chr2R_5018988_5019370 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG8920 chr2R + chr2R_16212627_16212683 chr2R_16212626_16212627;chr2R_16212683_16212684 chr2R_16212353_16212626;chr2R_16212684_16212835 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 7.89 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 K alternative_donor CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_239517_240531;chr4_239517_239863 chr4_239517_240516 chr4_239079_239516;chr4_240532_240654 97.96 97.87 100.00 97.18 100.00 100.00 98.18 100.00 96.80 100.00 97.22 97.62 97.62 100.00 100.00 100.00 97.62 74.19 98.00 98.40 97.44 100.00 94.44 95.35 96.30 100.00 97.06 94.74 89.47 97.06 98.46 90.91 95.35 98.59 96.67 85.71 97.96 96.67 100.00 98.00 92.31 98.88 100.00 100.00 100.00 96.97 97.30 95.00 98.89 97.73 98.00 100.00 100.00 96.15 100.00 96.88 100.00 100.00 K alternative_donor lark,noncoding_11093,REI_chr3L_7332718_7333975,RI_chr3L_7334219_7334452 chr3L + chr3L_7332718_7333975 chr3L_7333871_7333975 chr3L_7333976_7334075;chr3L_7332618_7332717 57.14 73.33 66.67 35.71 55.56 71.43 83.33 66.67 66.67 29.41 60.00 69.57 66.67 60.00 72.73 71.43 80.00 83.33 85.71 66.67 50.00 51.61 45.71 66.67 52.94 83.33 41.67 40.00 41.18 52.94 41.18 36.36 43.75 62.50 36.00 27.59 45.16 66.67 57.14 38.89 36.36 72.00 55.56 33.33 66.67 55.17 46.15 34.29 66.67 65.00 42.11 46.15 69.23 44.83 66.67 59.09 61.11 55.56 K intron_retention CG7971,I_chr3L_1659363_1659845,I_chr3L_1667736_1667806 chr3L - chr3L_1655152_1655253 chr3L_1655151_1655152;chr3L_1655253_1655254 chr3L_1654844_1655151;chr3L_1655254_1655460 5.65 3.25 8.00 9.80 7.55 7.32 59.18 12.28 8.20 4.65 11.63 8.93 6.67 10.00 10.42 20.00 8.16 9.43 13.33 9.24 19.51 2.91 4.02 4.44 3.33 0.00 6.17 6.59 4.26 19.23 10.71 11.43 4.11 5.80 0.00 0.00 3.91 1.69 3.74 2.60 4.17 5.74 NA 4.76 0.00 1.64 0.00 6.45 8.89 2.17 3.97 2.30 0.85 2.10 5.56 2.61 2.40 10.87 K intron_retention CG5021 chr3L + chr3L_8960311_8960381 chr3L_8960310_8960311;chr3L_8960381_8960382 chr3L_8960228_8960310;chr3L_8960382_8960616 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 1.35 4.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 2.91 0.85 0.00 4.11 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 1.90 K jcn_only_AD I_chr2L_8029734_8029787,Cka,CG7429 chr2L + chr2L_8031338_8032059;chr2L_8031163_8032059;chr2L_8031036_8032059;chr2L_8031309_8032059 chr2L_8030840_8032059 chr2L_8032060_8032641;chr2L_8030749_8030839 81.68 60.38 76.52 80.23 92.38 89.61 84.94 79.78 84.57 77.50 87.41 81.41 78.74 80.61 76.36 81.87 80.19 80.65 82.14 86.98 81.68 83.45 87.81 77.07 78.64 79.05 79.86 80.67 90.29 87.66 80.36 82.67 74.71 80.42 82.02 78.69 86.09 33.33 87.01 82.05 78.72 81.22 74.07 85.21 88.54 87.06 91.57 91.18 83.97 83.81 85.38 77.78 85.71 77.06 79.29 82.54 75.42 96.36 K alternative_donor CG3829,I_chr2R_20874677_20875710,I_chr2R_20874711_20875717,I_chr2R_20875172_20875710,I_chr2R_20875497_20875710 chr2R + chr2R_20875172_20875710;chr2R_20875350_20875710;chr2R_20874711_20875710 chr2R_20875497_20875710 chr2R_20875711_20875810;chr2R_20874611_20874710 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K intron_retention CG17754 chrX + chrX_9147605_9147683 chrX_9147604_9147605;chrX_9147683_9147684 chrX_9146561_9147604;chrX_9147684_9147891 14.29 15.38 15.38 24.32 15.00 26.92 25.93 18.92 11.76 0.00 9.09 7.14 12.50 20.00 25.00 22.22 9.09 26.32 13.04 22.22 NA 12.28 0.00 9.68 18.75 16.67 14.29 0.00 22.50 13.89 18.52 16.67 20.83 13.95 9.68 0.00 11.11 9.38 16.07 19.30 25.00 15.56 19.05 6.67 24.39 9.09 7.89 18.75 12.50 4.76 12.90 NA 8.70 10.00 22.22 10.53 12.50 38.89 K intron_retention Pcf11,RI_chr2R_10753287_10754988 chr2R - chr2R_10753239_10754988 chr2R_10753238_10753239;chr2R_10754988_10754989 chr2R_10753187_10753238;chr2R_10754989_10755088 28.57 28.57 10.53 36.00 17.65 17.39 30.00 34.78 29.41 NA 20.00 27.59 50.00 25.00 28.57 38.46 29.41 NA 10.53 25.00 33.33 37.04 23.53 22.73 NA 30.77 26.92 28.57 27.78 40.00 30.00 NA 22.22 33.33 NA 53.33 20.51 17.39 22.73 29.63 NA 27.27 33.33 25.93 NA 30.77 28.57 25.00 24.14 36.84 30.77 NA NA 26.67 27.78 NA NA NA K jcn_only_AA CG31431 chr3R + chr3R_17696730_17697680;chr3R_17696730_17697693 chr3R_17696730_17697703 chr3R_17696406_17696729;chr3R_17697704_17697862 90.29 94.41 93.37 90.19 88.15 88.82 90.04 93.10 91.78 92.59 90.38 93.04 94.24 93.26 91.98 89.66 87.02 90.34 90.22 89.66 92.97 91.80 88.10 87.41 90.35 97.37 88.39 88.10 88.37 84.38 85.71 86.49 89.06 90.73 90.59 94.64 90.24 94.44 89.36 92.59 87.76 89.75 90.83 91.98 96.30 88.49 90.48 87.39 92.11 88.17 90.06 92.70 82.26 92.86 90.21 91.89 90.29 84.88 N jcn_only_AA LanA,I_chr3L_6208090_6208194 chr3L - chr3L_6204579_6204825 chr3L_6204769_6204825 chr3L_6204826_6205054;chr3L_6204298_6204578 100.00 100.00 100.00 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG6361 chrX - chrX_18374762_18374826 chrX_18374761_18374762;chrX_18374826_18374827 chrX_18374747_18374761;chrX_18374827_18375098 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA 87.50 NA NA NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 100.00 K intron_retention Adar,RI_chrX_1668256_1669682,I_chrX_1668256_1682696,I_chrX_1674594_1674717 chrX + chrX_1669772_1672644 chrX_1669771_1669772;chrX_1672644_1672645 chrX_1669733_1669771;chrX_1672645_1672732 45.45 41.67 45.00 22.58 NA NA 65.00 51.72 48.48 NA 100.00 20.00 53.85 40.00 33.33 66.67 46.67 NA 42.11 38.46 88.89 NA 69.23 45.45 NA NA 58.82 NA NA NA 35.71 NA NA 52.00 NA 40.00 NA NA NA 43.75 NA 20.00 50.00 NA NA NA NA 55.56 44.44 NA 61.54 NA NA NA 30.77 NA NA NA K jcn_only_AD Zyx102EF,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1081261_1081364;chr4_1081261_1081366 chr4_1081261_1081398 chr4_1081180_1081260;chr4_1081399_1081402 11.35 NA NA NA NA NA 15.00 NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N jcn_only_AA exba,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1426370_1426736;chr3R_1423660_1426736;chr3R_1425087_1426736 chr3R_1426031_1426736 chr3R_1426737_1426835 1.07 1.06 0.70 0.00 0.68 1.84 0.75 2.31 0.54 0.00 2.12 1.80 3.48 0.27 0.65 2.77 1.24 1.52 2.13 3.38 1.64 1.56 0.75 0.96 0.39 1.49 0.00 0.00 2.58 0.00 1.07 3.23 2.46 0.73 0.41 4.51 0.00 0.00 1.63 0.49 1.32 1.56 1.10 1.13 1.55 0.65 0.29 1.88 0.87 0.24 1.29 1.31 0.51 1.77 1.93 0.26 0.25 0.00 K intron_retention hfw chrX + chrX_1566331_1566396 chrX_1566330_1566331;chrX_1566396_1566397 chrX_1565820_1566330;chrX_1566397_1568768 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG33170,RI_chr3L_22859073_22860499,I_chr3L_22859135_22860499 chr3L + chr3L_22859073_22860499;chr3L_22859061_22860499;chr3L_22859135_22860499 chr3L_22860419_22860499 chr3L_22860500_22860559 1.77 2.41 2.50 2.04 0.00 1.14 3.30 1.36 1.81 8.00 0.00 0.68 7.14 0.00 1.03 1.26 0.00 0.00 2.30 1.34 0.00 5.56 0.98 1.79 2.04 2.78 2.63 0.00 0.00 1.18 4.26 1.67 1.77 1.43 4.69 8.82 1.43 3.51 0.00 2.91 0.00 2.22 5.80 2.13 2.34 3.26 6.06 4.23 0.61 2.59 1.18 1.09 0.00 1.23 0.96 2.14 4.55 0.56 K jcn_only_AA SelD,I_chr2R_10157899_10158045 chr2R - chr2R_10157680_10158045 chr2R_10157899_10158045 chr2R_10158046_10158145;chr2R_10157642_10157679 0.00 0.92 0.00 0.00 0.00 0.00 0.89 0.00 0.45 0.00 0.00 1.18 1.11 0.85 0.00 0.00 0.00 0.00 0.00 0.70 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.51 0.00 0.54 2.22 0.00 0.00 0.00 0.81 0.00 0.00 0.77 2.44 1.54 0.00 0.00 0.00 0.00 1.14 1.03 0.00 0.00 1.03 0.78 0.71 0.00 0.00 0.00 K intron_retention PhKgamma,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11592631_11597322 chrX_11592630_11592631;chrX_11597322_11597323 chrX_11592533_11592630;chrX_11597323_11597422 23.53 NA NA NA NA NA 88.89 NA 23.08 NA NA NA 12.50 NA NA NA NA NA NA 23.53 NA 22.22 NA NA NA NA 23.08 14.29 NA 25.00 NA NA NA NA NA NA NA NA NA 29.41 NA 14.29 NA NA NA NA NA 31.25 46.15 NA 25.00 NA NA NA NA NA NA NA K intron_retention CG1103 chr3R + chr3R_164971_165034 chr3R_164970_164971;chr3R_165034_165035 chr3R_164766_164970;chr3R_165035_165640 98.75 98.82 98.86 100.00 98.80 98.88 97.39 99.28 98.96 100.00 98.63 99.37 100.00 100.00 97.75 100.00 100.00 97.44 98.68 98.54 100.00 96.43 100.00 98.94 98.11 96.74 100.00 100.00 95.38 98.36 97.87 98.51 100.00 98.56 98.25 100.00 97.03 100.00 99.09 99.30 98.51 97.75 98.55 97.75 98.00 97.27 98.41 100.00 100.00 98.86 98.75 97.87 98.53 98.48 99.13 98.67 97.83 99.24 K intron_retention I_chr2L_19388570_19389922,CG17544 chr2L - chr2L_19393657_19398350 chr2L_19393656_19393657;chr2L_19398350_19398351 chr2L_19393497_19393656;chr2L_19398351_19398401 8.33 7.14 4.76 6.82 10.26 9.33 11.48 11.11 9.84 9.68 8.33 7.38 13.16 5.63 7.69 11.83 10.00 3.39 3.51 8.97 6.98 19.67 10.61 7.94 17.65 4.84 17.50 15.00 17.39 5.71 5.71 5.77 9.09 8.14 7.58 6.35 14.29 15.62 14.29 7.10 7.35 12.80 3.77 9.72 4.41 4.95 10.26 3.60 7.09 15.15 13.56 16.67 10.53 0.00 8.05 5.56 12.20 4.92 K alternative_acceptor CG14341,I_chr2L_1166923_1166992 chr2L + chr2L_1166923_1166992 chr2L_1166923_1166982 chr2L_1166823_1166922;chr2L_1166993_1167092 100.00 96.88 95.45 100.00 100.00 100.00 96.77 97.37 98.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 93.75 100.00 100.00 100.00 96.15 100.00 94.74 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 97.50 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 97.14 96.77 95.83 95.35 100.00 97.73 K cassette CaMKII,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1058217_1058984 chr4_1058217_1058271;chr4_1058367_1058984 chr4_1058272_1058366 chr4_1058137_1058216;chr4_1058985_1059060 97.30 95.65 100.00 91.25 100.00 100.00 98.57 94.81 98.68 100.00 95.00 98.28 96.43 100.00 91.67 96.61 100.00 100.00 100.00 97.22 94.74 100.00 95.45 96.15 87.50 96.00 95.83 100.00 92.86 100.00 96.36 100.00 95.65 98.51 100.00 100.00 100.00 92.86 90.91 89.66 94.12 95.31 97.30 100.00 100.00 96.67 100.00 95.83 97.33 96.43 96.88 94.74 100.00 100.00 97.87 100.00 97.14 100.00 K alternative_acceptor RpS18,CG8908,EI_chr2R_16151918_16151997,I_chr2R_16151918_16152036,I_chr2R_16151938_16152065,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151938_16152036;chr2R_16151938_16151997;chr2R_16151938_16152006 chr2R_16151938_16152065 chr2R_16151852_16151937;chr2R_16152066_16152066 0.02 0.04 0.02 0.01 0.02 0.02 0.02 0.02 0.02 0.00 0.00 0.01 0.03 0.03 0.02 0.02 0.03 0.02 0.00 0.01 0.00 0.20 0.02 0.04 0.03 0.03 0.04 0.04 0.05 0.00 0.02 0.03 0.03 0.02 0.04 0.03 0.01 0.02 0.04 0.07 0.03 0.03 0.00 0.03 0.00 0.02 0.00 0.00 0.02 0.02 0.05 0.00 0.00 0.02 0.02 0.08 0.00 0.02 K intron_retention CG8176,I_chr3R_5348614_5348964 chr3R + chr3R_5351867_5351935 chr3R_5351866_5351867;chr3R_5351935_5351936 chr3R_5351531_5351866;chr3R_5351936_5352165 0.00 0.00 0.00 0.59 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.67 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 1.52 4.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention CG15547,I_chr3R_26712627_26714606,RI_chr3R_26713323_26714382 chr3R - chr3R_26708650_26708849 chr3R_26708649_26708650;chr3R_26708849_26708850 chr3R_26707547_26708649;chr3R_26708850_26709639 81.25 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 11.11 NA NA 62.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette rols,I_chr3L_12048809_12049314 chr3L - chr3L_12005332_12006030 chr3L_12005332_12005527;chr3L_12005831_12006030 chr3L_12005528_12005830 chr3L_12004171_12005331;chr3L_12006031_12006147 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA 30.00 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG7177 chr3L - chr3L_21547281_21547480;chr3L_21547281_21547665 chr3L_21547281_21547653 chr3L_21547125_21547280;chr3L_21547666_21547994 82.61 NA NA 89.29 NA 95.00 89.47 82.61 87.76 NA NA 92.31 83.33 NA NA 75.00 NA NA NA 82.35 NA 88.00 77.27 NA NA NA NA NA NA NA 77.27 NA NA 93.94 NA NA 65.22 NA NA 71.43 NA 80.56 NA NA NA NA NA 93.75 78.12 NA 76.00 NA NA NA 82.61 NA NA NA K intron_retention CG14235,noncoding_24847,CG18809,noncoding_24848 chrX - chrX_19637740_19638294 chrX_19637739_19637740;chrX_19638294_19638295 chrX_19637477_19637739;chrX_19638295_19638317 13.04 12.00 20.00 19.57 8.33 13.04 14.71 17.39 10.71 NA 15.00 20.41 13.79 17.86 17.65 11.11 10.34 15.79 16.28 8.11 13.33 10.87 14.71 14.29 14.29 12.50 41.67 NA 5.56 5.88 13.51 12.50 23.81 13.33 7.69 NA 10.00 3.85 13.33 12.50 NA 16.95 13.04 16.67 12.50 18.18 3.45 60.00 8.47 8.33 0.00 8.33 7.41 0.00 13.79 8.33 7.69 NA K alternative_acceptor Nos,I_chr2L_10826086_10826539 chr2L - chr2L_10812569_10813300 chr2L_10812884_10813300 chr2L_10813301_10813441;chr2L_10812493_10812568 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG11006,F_chr3L_12799159_12799339 chr3L + chr3L_12804987_12805049 chr3L_12804986_12804987;chr3L_12805049_12805050 chr3L_12804778_12804986;chr3L_12805050_12805320 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 N cassette Dif,I_chr2L_17414333_17414528,I_chr2L_17414576_17415280,I_chr2L_17418395_17418487 chr2L - chr2L_17414333_17417570 chr2L_17414333_17415280;chr2L_17415389_17417570 chr2L_17415281_17415388 chr2L_17414233_17414332;chr2L_17417571_17417646 100.00 100.00 100.00 82.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor lig,CI_chr2R_3962006_3962916,I_chr2R_3962357_3962977,RI_chr2R_3962875_3962977 chr2R + chr2R_3962006_3962980 chr2R_3962006_3962977 chr2R_3961906_3962005;chr2R_3962981_3963016 99.11 96.67 99.10 99.38 100.00 100.00 100.00 99.41 98.53 100.00 100.00 99.44 95.06 98.84 100.00 100.00 98.02 97.25 98.26 100.00 99.08 99.46 100.00 99.24 97.50 99.11 100.00 98.21 98.88 99.23 99.07 98.85 99.13 100.00 98.96 99.10 99.36 96.21 99.44 99.32 100.00 99.55 98.65 99.01 100.00 100.00 97.71 99.06 98.86 98.55 99.38 98.53 98.61 100.00 99.25 99.10 98.98 99.11 K intron_retention RanBPM chr2R + chr2R_6322291_6322422 chr2R_6322290_6322291;chr2R_6322422_6322423 chr2R_6322157_6322290;chr2R_6322423_6322534 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.87 1.79 0.00 0.00 0.00 0.00 0.00 0.00 2.68 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Prp8,I_chr2R_8050245_8050389 chr2R - chr2R_8050217_8050389 chr2R_8050245_8050389 chr2R_8050390_8050489;chr2R_8050145_8050216 0.00 0.00 0.00 0.88 0.00 0.00 1.56 1.04 0.88 0.00 0.00 1.49 0.00 0.00 1.49 0.00 0.00 0.00 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 1.59 0.00 0.62 0.91 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.85 NA 1.49 0.00 4.76 NA 0.00 0.00 NA 0.00 K intron_retention Gga chrX + chrX_9496709_9496777 chrX_9496708_9496709;chrX_9496777_9496778 chrX_9496114_9496708;chrX_9496778_9497496 0.00 0.00 0.00 11.11 0.00 2.78 0.00 2.00 0.00 0.00 0.00 1.61 4.76 0.00 2.44 0.00 0.00 0.00 0.00 1.39 0.00 32.00 2.70 0.00 0.00 4.17 0.00 0.00 3.45 0.00 11.76 0.00 0.00 0.00 0.00 0.00 2.80 0.00 2.44 4.65 4.35 5.26 NA 0.00 2.27 0.00 4.76 5.56 1.59 2.38 0.00 0.00 2.86 0.00 0.00 0.00 2.00 0.00 K jcn_only_AA Zyx102EF,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1081280_1081366;chr4_1081286_1081366 chr4_1081261_1081366 chr4_1081367_1081379;chr4_1081180_1081260 50.00 NA NA NA NA NA 56.67 50.00 50.00 NA NA 55.00 NA NA NA 47.22 NA NA NA 52.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA 47.62 NA NA NA NA NA NA 52.00 NA NA NA NA NA NA NA NA NA K intron_retention dre4,I_chr3L_1875590_1875651,F_chr3L_1877432_1877517 chr3L - chr3L_1871918_1872353 chr3L_1871917_1871918;chr3L_1872353_1872354 chr3L_1871528_1871917;chr3L_1872354_1872470 4.44 6.85 4.76 5.19 15.00 0.00 5.81 0.00 7.53 3.57 8.16 1.74 12.50 15.00 2.56 5.71 2.56 14.29 11.90 1.49 7.14 0.00 3.20 2.04 3.57 0.00 7.69 5.71 5.00 4.44 9.76 3.33 4.08 5.63 4.84 1.32 4.10 5.97 2.11 4.81 6.15 7.14 0.00 3.51 0.00 3.03 1.33 8.00 6.45 4.90 2.70 3.23 1.72 3.49 12.24 1.80 3.55 4.48 K alternative_donor osa chr3R - chr3R_13522309_13523386 chr3R_13522309_13523377 chr3R_13522092_13522308;chr3R_13523387_13523635 11.84 9.28 7.89 16.25 13.24 9.86 14.29 12.23 8.93 12.86 11.54 12.97 13.51 6.25 11.65 7.76 12.36 13.25 12.16 12.94 14.04 10.95 12.60 9.47 6.12 11.84 11.43 18.18 23.15 9.16 12.00 11.32 12.05 10.40 8.79 12.04 11.30 8.82 13.95 3.63 11.43 12.57 11.76 11.36 11.67 12.36 14.58 18.54 8.77 10.00 12.50 10.00 18.64 8.33 12.00 13.64 14.71 9.90 K cassette eIF5,noncoding_24049,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15883984_15885854 chrX_15883984_15885115;chrX_15885416_15885854 chrX_15885116_15885415 chrX_15883938_15883983;chrX_15885855_15885912 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 98.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG32016,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_978516_978612;chr4_978516_978631 chr4_978516_978914 chr4_978478_978515;chr4_978915_978920 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K cassette Sec16,I_chrX_12501913_12502010,I_chrX_12502899_12502973 chrX + chrX_12494475_12497042 chrX_12494475_12495615;chrX_12495931_12497042 chrX_12495616_12495930 chrX_12491379_12494474;chrX_12497043_12497499 1.75 0.00 0.00 3.12 0.00 0.00 6.45 0.00 2.00 4.17 5.88 14.29 0.00 0.00 4.35 15.79 0.00 NA NA 13.04 NA 0.00 2.38 3.45 0.00 NA 3.45 0.00 0.00 0.00 0.00 NA 5.26 3.12 0.00 5.88 1.75 0.00 2.63 4.65 NA 4.44 NA 0.00 NA 0.00 NA 0.00 3.03 0.00 8.33 5.88 NA NA 0.00 0.00 NA 6.25 K jcn_only_AA CG12112,CG12111 chrX - chrX_8453877_8453953 chrX_8453892_8453953 chrX_8453954_8454022;chrX_8453812_8453876 98.81 97.54 100.00 98.15 99.09 98.69 99.59 100.00 98.40 95.89 100.00 99.56 99.03 100.00 99.29 99.49 100.00 97.20 100.00 98.87 98.43 98.55 97.44 98.06 100.00 98.40 99.24 98.67 97.67 96.84 98.84 100.00 100.00 99.19 97.00 89.66 96.88 99.20 98.56 98.08 90.70 99.27 100.00 99.26 100.00 97.95 98.28 100.00 98.85 98.69 97.92 97.62 98.18 98.18 98.81 99.08 100.00 97.78 K cassette Slip1,RI_chr4_684967_689045,I_chr4_685717_686576,RI_chr4_685717_689045,RI_chr4_687548_689045 chr4 + chr4_684967_686576 chr4_684967_685613;chr4_685717_686576 chr4_685614_685716 chr4_684914_684966;chr4_686577_686676 87.50 88.24 94.29 98.68 88.46 85.19 85.19 89.29 82.93 100.00 100.00 87.93 88.24 87.50 88.89 81.25 82.50 100.00 83.33 87.06 96.67 86.36 90.00 85.19 90.48 80.49 97.30 100.00 81.25 77.42 92.11 78.57 93.10 81.82 85.71 96.15 96.55 90.00 90.32 86.11 83.33 83.33 87.10 87.50 87.50 84.00 94.44 94.74 84.13 90.91 88.37 90.00 69.23 77.78 86.54 85.71 88.00 67.86 N cassette CG31531,noncoding_14584,I_chr3R_486122_506500,I_chr3R_496573_505950,I_chr3R_523978_526879 chr3R + chr3R_486122_522912 chr3R_486122_496518;chr3R_496573_522912 chr3R_496519_496572 chr3R_486022_486121;chr3R_522913_523263 100.00 NA NA 100.00 NA 100.00 28.57 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 60.00 100.00 100.00 NA 100.00 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA NA 68.18 NA NA NA NA NA 63.16 NA NA NA N jcn_only_AA I_chr3L_212783_212843,Kaz1-ORFA,Kaz1-ORFB,Kaz1-ORFA_Kaz1-ORFB chr3L + chr3L_217443_217496 chr3L_217443_217490 chr3L_217400_217442;chr3L_217497_217775 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette CG32017,RI_chr4_1161994_1164252 chr4 - chr4_1161994_1164252 chr4_1161994_1164074;chr4_1164192_1164252 chr4_1164075_1164191 chr4_1161988_1161993;chr4_1164253_1164352 96.15 90.48 96.67 92.00 100.00 96.15 96.15 98.28 97.62 38.46 95.65 91.30 100.00 96.43 97.37 94.59 96.30 100.00 94.59 90.24 95.65 95.00 95.24 100.00 91.67 75.00 86.96 NA 90.91 93.75 94.34 100.00 100.00 100.00 94.12 93.75 93.75 100.00 100.00 100.00 100.00 100.00 96.15 100.00 NA 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 85.71 100.00 87.50 93.33 94.12 K intron_retention CG12753,Pak3 chr3R - chr3R_12263722_12263786 chr3R_12263721_12263722;chr3R_12263786_12263787 chr3R_12263702_12263721;chr3R_12263787_12264365 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 2.70 NA 2.38 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.41 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20824602_20825271;chr2L_20824494_20825271;chr2L_20824631_20825271 chr2L_20824725_20825271 chr2L_20825272_20825366;chr2L_20824482_20824493 3.85 NA NA NA NA NA 12.90 6.90 4.00 NA 3.85 NA NA NA NA 3.85 NA 4.17 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA 4.76 3.57 9.09 NA NA NA NA NA NA 0.00 NA 3.70 NA NA 2.63 5.41 NA 3.17 0.00 NA NA NA NA NA 9.52 NA NA 1.85 K alternative_donor hd chr3R - chr3R_1200113_1200171 chr3R_1200113_1200167 chr3R_1199955_1200112;chr3R_1200172_1200353 5.50 NA 0.00 NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA 4.76 NA NA NA 0.00 NA NA NA NA NA NA 35.71 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 6.67 NA 6.25 NA NA 7.69 NA NA NA 6.67 NA NA NA 12.00 K alternative_donor gw,RI_chr4_679135_679703,I_chr4_679135_680299,RI_chr4_679135_680693,I_chr4_679135_681047,I_chr4_679135_681671 chr4 - chr4_679135_681128;chr4_679135_681206 chr4_679135_681054 chr4_679035_679134;chr4_681207_681208 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 K intron_retention DNApol-alpha180 chr3R - chr3R_17492533_17492861 chr3R_17492532_17492533;chr3R_17492861_17492862 chr3R_17492275_17492532;chr3R_17492862_17493340 0.00 0.00 1.52 9.09 0.00 1.69 3.61 2.11 2.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 2.21 0.00 0.00 0.00 1.15 0.00 0.00 2.35 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.78 0.00 0.00 0.00 4.65 1.33 0.00 0.00 0.00 0.00 0.00 0.00 2.48 0.00 0.00 0.00 0.00 1.23 1.23 2.50 0.00 2.82 K intron_retention brp chr2R + chr2R_5420034_5420168 chr2R_5420033_5420034;chr2R_5420168_5420169 chr2R_5419929_5420033;chr2R_5420169_5420285 5.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.33 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 5.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_last_exon CG11107 chr2R + chr2R_3277016_3277582 chr2R_3277016_3277473 chr2R_3277583_3278126 chr2R_3277474_3277542 chr2R_3276752_3277015 0.49 0.82 0.00 0.68 0.00 1.06 0.00 0.65 0.49 0.00 0.00 0.55 1.41 1.16 0.00 0.00 0.00 0.00 0.00 0.94 0.00 2.11 0.55 1.28 0.00 0.00 2.07 0.00 0.00 0.00 0.00 0.00 0.00 0.68 1.28 0.00 0.00 0.80 0.00 0.74 2.99 1.55 0.00 1.71 1.16 1.74 0.75 0.00 0.00 2.86 0.65 0.00 0.95 1.60 0.00 2.10 0.00 2.13 K cassette CG3209,I_chr2R_19957751_19959513,RI_chr2R_19957766_19960227,I_chr2R_19959163_19959513 chr2R + chr2R_19957766_19959513;chr2R_19957766_19960227 chr2R_19957766_19958290;chr2R_19958528_19959513,chr2R_19958528_19960227 chr2R_19958291_19958527 chr2R_19957666_19957765;chr2R_19960228_19960327 2.86 1.97 2.86 3.82 1.54 2.80 3.77 3.60 2.11 2.22 2.22 5.78 3.81 4.67 1.82 3.45 3.54 1.23 3.12 5.88 1.79 2.84 3.24 2.86 3.48 1.91 3.28 2.67 1.97 2.61 3.97 1.77 1.56 3.61 3.81 4.04 0.98 2.55 1.55 2.62 3.85 2.55 3.26 3.31 1.26 2.65 2.55 2.61 3.14 2.88 3.39 4.12 1.61 3.54 2.94 2.00 3.05 3.23 K jcn_only_AD CG3045,RI_chr2R_18061765_18061839,RI_chr2R_18066002_18070327 chr2R - chr2R_18061765_18061839 chr2R_18061765_18061820 chr2R_18061696_18061764;chr2R_18061840_18061884 93.78 NA 100.00 94.23 NA 100.00 88.00 96.55 97.96 NA NA 94.74 95.65 90.48 91.89 95.35 NA 96.15 93.33 97.14 NA 90.91 87.50 95.45 NA 93.33 NA NA 84.62 91.67 72.34 92.59 87.72 96.08 100.00 81.48 NA NA 94.74 94.83 90.32 91.11 95.65 NA 93.33 96.67 NA 90.00 100.00 95.45 90.00 NA NA NA 100.00 NA 91.30 92.31 N jcn_only_AA Kr-h1 chr2L + chr2L_6083741_6091609;chr2L_6083741_6092994 chr2L_6083741_6084867 chr2L_6083642_6083740 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 81.67 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention Adar,I_chrX_1668256_1682696,I_chrX_1674594_1674717 chrX + chrX_1673292_1674094 chrX_1673291_1673292;chrX_1674094_1674095 chrX_1673123_1673291;chrX_1674095_1674277 91.67 90.00 94.44 70.83 91.67 78.57 94.44 100.00 87.50 66.67 87.50 96.88 100.00 90.00 92.31 100.00 94.74 90.91 92.86 94.12 100.00 87.50 88.46 100.00 92.31 91.67 90.48 NA 66.67 90.00 89.47 NA 80.00 93.10 92.31 86.36 78.57 100.00 84.62 76.67 100.00 86.67 81.25 100.00 NA 95.00 100.00 90.48 88.46 93.75 94.74 100.00 90.91 90.00 82.61 91.67 91.67 NA K intron_retention F_chr2L_5045484_5046146,His3_3A chr2L + chr2L_5055541_5055630 chr2L_5055540_5055541;chr2L_5055630_5055631 chr2L_5055252_5055540;chr2L_5055631_5055677 0.57 0.34 0.57 1.57 0.00 0.58 1.09 0.87 0.64 0.23 0.36 0.29 0.78 0.76 0.78 0.00 0.89 0.30 0.00 0.38 0.70 1.83 0.48 0.56 0.84 0.63 0.76 2.58 0.80 0.44 0.34 0.60 0.53 0.44 0.84 0.26 1.62 0.62 0.50 0.69 0.52 1.04 0.86 0.96 0.56 0.38 0.42 0.00 0.96 0.36 1.08 0.87 0.18 0.38 0.00 0.62 0.27 0.19 K alternative_acceptor eIF-4a,I_chr2L_5985221_5985289 chr2L + chr2L_5985221_5985289;chr2L_5985221_5985338 chr2L_5985221_5985342 chr2L_5985121_5985220;chr2L_5985343_5985389 1.49 1.88 1.46 1.49 1.31 1.68 2.08 1.33 1.66 1.37 1.41 1.63 1.25 0.93 1.79 1.61 1.55 2.28 1.85 1.28 1.40 0.87 1.43 1.74 1.04 1.42 1.68 1.42 1.42 0.82 1.70 1.72 1.08 1.72 1.48 1.17 2.08 1.36 1.70 0.86 1.22 1.52 1.94 1.70 1.63 1.18 1.39 1.76 1.40 1.45 1.43 1.82 1.65 2.05 1.74 1.55 1.77 1.30 K alternative_donor AnnIX chr3R + chr3R_16891008_16893167;chr3R_16891137_16893167;chr3R_16891033_16893167 chr3R_16891124_16893167 chr3R_16893168_16893221;chr3R_16890951_16891007 12.50 10.77 6.74 7.06 13.56 9.03 22.00 5.73 11.70 21.74 21.43 9.31 19.30 9.01 4.37 9.77 9.00 6.25 7.10 7.72 17.60 17.39 20.41 18.92 14.29 7.32 15.22 15.79 20.83 26.92 8.49 7.14 3.03 5.76 19.51 24.24 26.92 19.23 12.50 11.59 7.14 7.67 7.75 23.33 5.71 15.28 21.74 9.76 6.44 30.56 20.34 17.50 17.39 17.65 6.71 25.64 20.00 4.65 K intron_retention CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_244354_244443 chr4_244353_244354;chr4_244443_244444 chr4_244183_244353;chr4_244444_244512 100.00 97.83 100.00 98.55 100.00 100.00 100.00 99.06 99.07 100.00 100.00 98.94 100.00 98.00 100.00 100.00 100.00 100.00 98.55 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 98.61 100.00 100.00 98.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.03 100.00 97.22 91.67 100.00 96.30 100.00 99.19 100.00 100.00 100.00 100.00 100.00 98.59 100.00 100.00 97.73 K jcn_only_AD RI_chrX_7172561_7252693,CG1677,I_chrX_7178792_7252693,unc-119 chrX - chrX_7184711_7184825 chrX_7184711_7184821 chrX_7184704_7184710;chrX_7184826_7185302 98.21 97.78 97.92 96.05 100.00 90.32 100.00 98.36 97.75 100.00 96.67 97.53 96.15 94.74 100.00 93.33 100.00 95.24 100.00 98.88 100.00 98.25 100.00 100.00 94.74 97.87 100.00 94.29 97.22 94.03 100.00 97.14 97.32 98.08 100.00 98.36 96.23 100.00 97.92 98.80 98.55 96.15 100.00 97.22 100.00 98.21 96.23 100.00 95.29 97.73 100.00 100.00 94.59 96.55 100.00 100.00 100.00 98.33 K jcn_only_AD CG4199,I_chrX_1962457_1964222 chrX - chrX_1965614_1965872;chrX_1965614_1967409;chrX_1965614_1967149 chrX_1965614_1966582 chrX_1965393_1965613;chrX_1967410_1967460 0.00 0.56 0.00 0.00 0.00 1.03 0.74 0.53 0.00 0.00 0.00 0.56 0.82 0.00 0.00 2.22 0.00 0.00 0.90 0.95 0.00 0.00 0.40 0.51 0.00 0.89 0.93 0.94 0.53 0.00 0.74 0.90 0.96 0.00 0.00 0.00 0.24 0.00 0.00 0.85 1.28 0.00 0.00 0.30 0.00 0.50 0.00 0.42 1.33 0.00 0.62 0.00 1.78 0.00 0.00 0.00 0.00 1.10 K alternative_acceptor CG6664 chr3L - chr3L_17008359_17008772 chr3L_17008367_17008772 chr3L_17008773_17008830;chr3L_17008241_17008358 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG1663,CG1665,RI_chr2R_5731409_5731653,I_chr2R_5732410_5732504 chr2R + chr2R_5724937_5724994 chr2R_5724936_5724937;chr2R_5724994_5724995 chr2R_5724481_5724936;chr2R_5724995_5725931 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA 0.00 NA NA 0.00 NA NA 8.70 NA NA NA NA NA NA NA NA NA 0.00 K jcn_only_AD Pten,I_chr2L_10256507_10256803,F_chr2L_10259663_10260253 chr2L - chr2L_10259691_10260853 chr2L_10259691_10260253 chr2L_10259476_10259690;chr2L_10260854_10260860 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 96.77 NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 96.77 NA NA NA NA NA NA NA NA NA K intron_retention CG6623,I_chr3R_11040813_11040964,I_chr3R_11042070_11042139 chr3R - chr3R_11041404_11041465 chr3R_11041403_11041404;chr3R_11041465_11041466 chr3R_11041061_11041403;chr3R_11041466_11042069 0.00 2.94 0.00 5.56 0.00 0.00 3.23 0.00 2.56 0.00 0.00 0.00 0.00 NA 0.00 3.33 0.00 0.00 0.00 2.00 0.00 0.00 5.56 0.00 0.00 0.00 5.71 NA 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG9948 chr3L + chr3L_6949263_6949314;chr3L_6949263_6949332 chr3L_6949263_6949310 chr3L_6949194_6949262;chr3L_6949333_6949497 52.94 53.85 61.54 42.11 53.85 57.89 58.82 45.83 51.28 NA 50.00 70.97 58.82 75.00 52.00 72.73 62.50 58.82 55.17 56.41 60.00 52.63 NA 41.18 66.67 59.09 NA NA NA 42.86 50.00 NA NA 47.22 50.00 60.00 50.00 45.45 NA 72.00 54.55 42.86 57.14 37.50 60.00 41.67 52.94 47.06 72.73 52.63 45.83 37.50 52.38 50.00 60.00 34.78 67.86 36.67 K intron_retention ERp60,RI_chr2R_7790917_7791377 chr2R - chr2R_7776194_7776453 chr2R_7776193_7776194;chr2R_7776453_7776454 chr2R_7776080_7776193;chr2R_7776454_7776894 0.11 0.24 0.00 0.27 0.00 0.10 0.34 0.19 0.23 0.00 0.11 0.00 0.27 0.28 0.32 0.00 0.00 0.10 0.16 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.20 0.13 0.31 0.00 0.00 0.17 0.11 0.12 0.17 0.00 0.00 0.00 0.00 0.00 0.12 0.19 0.00 0.00 0.11 0.20 0.12 0.13 0.18 0.42 0.13 0.00 0.41 0.18 0.00 0.00 0.00 0.16 K intron_retention Hr39,I_chr2L_21256047_21256260 chr2L + chr2L_21237421_21238280 chr2L_21237420_21237421;chr2L_21238280_21238281 chr2L_21237406_21237420;chr2L_21238281_21238529 25.66 NA NA 31.82 NA NA NA 25.00 33.33 NA NA 14.29 NA NA NA NA NA NA NA 35.29 NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 26.32 NA NA NA NA NA 23.08 NA NA NA K alternative_donor CG6700 chr2L - chr2L_10842274_10842384 chr2L_10842274_10842380 chr2L_10840867_10842273;chr2L_10842385_10842626 84.50 76.47 71.43 78.43 87.50 85.71 75.68 82.61 81.97 NA 85.00 78.12 94.12 72.73 85.71 100.00 85.71 95.24 87.10 84.38 66.67 93.33 81.82 75.00 90.00 82.61 70.00 90.00 88.89 90.00 84.62 NA 100.00 80.56 86.67 80.00 92.31 NA 77.78 95.65 NA 79.55 75.00 88.89 NA 88.89 80.00 71.43 75.00 NA 76.00 71.43 NA NA 86.36 91.67 100.00 NA K intron_retention Pfrx,I_chrX_19390217_19400515,RI_chrX_19390217_19403850,RI_chrX_19392914_19400518,RI_chrX_19399882_19400518,I_chrX_19400112_19400515,RI_chrX_19400112_19400518,I_chrX_19400271_19400518 chrX + chrX_19400271_19400515 chrX_19400270_19400271;chrX_19400515_19400516 chrX_19400171_19400270;chrX_19400516_19400615 67.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 65.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 70.00 NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA 60.00 N jcn_only_AD Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2604280_2607692;chr3L_2604280_2629140 chr3L_2604280_2604540 chr3L_2602428_2604279 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chrX_1796525_1796585,mip130,CG3573,I_chrX_1820956_1821011,CG11596 chrX + chrX_1820666_1820726 chrX_1820665_1820666;chrX_1820726_1820727 chrX_1820479_1820665;chrX_1820727_1820951 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD MAPk-Ak2,RI_chrX_5655618_5656137,I_chrX_5656715_5657427,I_chrX_5656715_5657893,I_chrX_5656715_5657974 chrX - chrX_5656715_5658141;chrX_5656715_5658101 chrX_5656715_5658126 chrX_5656615_5656714;chrX_5658142_5658214 81.99 85.09 83.33 79.89 87.70 79.12 82.35 82.87 80.21 92.00 77.23 79.65 96.74 81.63 84.30 84.53 80.77 82.05 76.42 78.52 75.00 80.39 83.33 79.14 84.35 79.83 69.28 79.12 55.88 74.23 77.25 69.39 75.00 79.07 84.78 76.38 89.16 84.50 81.48 85.71 80.00 80.34 84.00 81.99 79.71 76.52 84.03 83.95 78.07 83.81 82.24 86.67 84.47 82.46 83.06 84.89 83.87 83.78 K intron_retention Vha100-2 chr3R - chr3R_14219132_14224713 chr3R_14219131_14219132;chr3R_14224713_14224714 chr3R_14218994_14219131;chr3R_14224714_14225201 0.00 2.70 0.00 2.94 0.00 0.00 2.67 1.16 1.88 0.00 0.00 0.00 0.00 0.00 4.00 1.26 1.39 0.99 1.43 1.46 0.00 2.50 3.61 2.38 0.00 1.85 1.94 0.00 0.00 0.00 0.83 0.00 0.00 2.19 0.00 1.56 1.00 2.90 1.61 1.26 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 1.82 1.33 0.00 1.08 0.00 K intron_retention CG14671 chr3R - chr3R_1390063_1390127 chr3R_1390062_1390063;chr3R_1390127_1390128 chr3R_1389847_1390062;chr3R_1390128_1390464 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 1.92 10.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 K intron_retention I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,I_chr3R_17183927_17184513,I_chr3R_17183927_17185306,RI_chr3R_17184319_17184513,I_chr3R_17184319_17185084,I_chr3R_17184319_17185284,noncoding_18168,RI_chr3R_17184792_17185306,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,RI_chr3R_17189607_17189988,I_chr3R_17190098_17190207,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17183927_17184513 chr3R_17183926_17183927;chr3R_17184513_17184514 chr3R_17183827_17183926;chr3R_17184514_17184613 93.75 100.00 92.86 91.30 92.31 93.75 92.86 96.30 96.15 100.00 100.00 81.82 100.00 82.35 93.75 95.00 100.00 100.00 100.00 100.00 100.00 65.00 94.12 93.33 88.89 100.00 87.50 NA 80.00 84.62 90.24 80.00 92.31 95.65 90.91 90.91 100.00 93.33 86.67 96.00 75.00 96.15 100.00 100.00 93.33 92.86 77.78 94.44 100.00 100.00 95.83 92.86 NA 100.00 93.75 100.00 90.91 100.00 N cassette CG7956,CE_chr3R_17350242_17350304 chr3R + chr3R_17350238_17351248 chr3R_17350238_17350300;chr3R_17350372_17351248 chr3R_17350301_17350371 chr3R_17350142_17350237;chr3R_17351249_17351485 66.90 70.00 82.50 60.87 75.44 100.00 66.39 68.97 67.52 64.52 74.36 70.00 47.50 69.70 72.15 74.12 69.70 57.58 77.46 86.92 74.60 56.74 56.07 58.82 49.09 61.02 60.00 48.98 53.33 62.71 59.70 64.71 62.90 71.54 64.15 65.71 67.21 71.74 56.92 60.40 67.39 69.18 71.19 61.29 52.50 67.16 68.63 68.97 66.90 47.89 62.75 59.52 100.00 67.86 69.44 59.65 59.68 82.69 K intron_retention REI_chr3R_10392729_10393060,CG8066,RI_chr3R_10394291_10394385,I_chr3R_10394322_10394381,RI_chr3R_10400799_10401492 chr3R - chr3R_10394322_10394385 chr3R_10394321_10394322;chr3R_10394385_10394386 chr3R_10394222_10394321;chr3R_10394386_10394481 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 K intron_retention CG31342,I_chr3R_8813079_8814327,I_chr3R_8822346_8822403 chr3R + chr3R_8812153_8812210 chr3R_8812152_8812153;chr3R_8812210_8812211 chr3R_8811777_8812152;chr3R_8812211_8812431 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 11.59 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.67 0.00 0.00 0.00 0.00 0.00 3.85 0.00 5.41 0.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9779,RI_chr3R_136377_136528 chr3R - chr3R_136377_136508 chr3R_136376_136377;chr3R_136508_136509 chr3R_136277_136376;chr3R_136509_136669 0.00 0.00 0.00 0.00 0.00 0.00 1.54 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Eip71CD chr3L + chr3L_15505466_15505575 chr3L_15505465_15505466;chr3L_15505575_15505576 chr3L_15505274_15505465;chr3L_15505576_15505836 11.76 7.41 9.09 21.15 0.00 15.79 16.67 14.71 22.22 1.79 30.00 21.88 NA 11.76 9.68 18.92 9.09 21.05 19.05 18.52 8.33 26.32 12.50 6.90 12.50 25.00 21.88 11.11 NA 0.00 14.29 11.11 NA 11.76 3.45 7.41 16.00 7.50 15.15 15.52 17.39 13.95 15.38 3.92 6.25 4.08 6.38 16.00 18.75 15.15 9.52 11.43 9.68 5.88 7.14 1.79 1.67 9.52 K intron_retention CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4990451_4990505 chr2L_4990450_4990451;chr2L_4990505_4990506 chr2L_4990308_4990450;chr2L_4990506_4990629 1.91 2.50 0.00 2.58 2.11 2.02 3.05 1.33 3.15 0.00 0.00 1.91 3.54 2.20 0.00 3.12 3.28 0.88 3.94 2.42 2.47 1.58 1.60 2.40 1.29 3.05 5.50 1.30 2.29 2.36 3.09 0.00 0.00 2.40 3.70 1.54 1.18 1.90 0.00 1.83 0.00 2.04 0.00 2.14 0.00 0.83 1.82 2.27 2.20 0.00 3.57 3.88 1.39 0.00 1.92 0.00 1.68 0.00 K alternative_acceptor CG10126 chr3R - chr3R_8682298_8683211 chr3R_8682328_8683211 chr3R_8683212_8683280;chr3R_8682179_8682297 96.97 100.00 100.00 96.77 90.00 100.00 100.00 94.12 97.37 NA 92.86 100.00 100.00 100.00 94.74 94.12 100.00 100.00 93.75 96.67 100.00 100.00 100.00 100.00 100.00 94.44 100.00 NA 100.00 92.31 95.83 100.00 NA 100.00 100.00 81.25 92.86 90.91 92.31 100.00 100.00 96.97 100.00 88.89 90.91 95.00 100.00 88.89 96.43 94.12 100.00 NA NA 93.33 93.75 90.91 91.67 NA K jcn_only_AA Cyp28a5 chr2L + chr2L_13977548_13977695 chr2L_13977548_13977691 chr2L_13977303_13977547;chr2L_13977696_13977938 97.67 97.30 100.00 94.32 97.06 94.12 96.81 94.95 98.35 NA 97.44 98.81 100.00 100.00 95.56 98.28 97.67 100.00 97.92 96.95 97.22 100.00 100.00 100.00 100.00 97.78 100.00 100.00 98.18 96.55 94.12 94.44 96.36 94.44 94.59 97.67 97.73 100.00 95.45 100.00 95.89 98.68 100.00 98.90 89.19 94.59 95.65 95.18 100.00 100.00 100.00 100.00 NA NA 95.35 91.67 NA 95.65 K intron_retention MP1 chr3R + chr3R_133779_133985 chr3R_133778_133779;chr3R_133985_133986 chr3R_133630_133778;chr3R_133986_134149 0.00 0.00 0.70 3.75 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.87 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Ras85D,I_chr3R_5338160_5338509,EI_chr3R_5338175_5338279,I_chr3R_5338175_5338299 chr3R - chr3R_5338160_5338509 chr3R_5338175_5338509 chr3R_5338510_5338609;chr3R_5338075_5338159 99.54 98.85 100.00 99.28 100.00 99.54 100.00 99.73 99.78 97.08 99.19 99.74 100.00 100.00 99.63 99.29 99.49 99.54 99.56 99.66 99.17 99.45 100.00 99.47 100.00 98.57 99.47 100.00 98.96 99.59 99.27 100.00 99.30 99.71 99.35 99.45 98.66 98.67 100.00 98.81 99.63 99.55 100.00 98.81 99.38 99.67 100.00 99.52 99.53 99.25 99.32 99.17 98.79 100.00 99.65 100.00 98.97 99.59 K jcn_only_AD CG17385,I_chr2R_10298790_10298843 chr2R - chr2R_10298790_10298843;chr2R_10298790_10298847 chr2R_10298790_10298841 chr2R_10298690_10298789;chr2R_10298848_10298916 0.23 0.41 0.39 0.94 0.00 0.00 0.00 0.32 0.00 0.00 0.51 0.23 0.00 0.55 0.41 0.92 0.00 0.00 0.45 0.15 0.00 0.00 0.67 0.00 0.00 0.84 0.00 0.35 0.23 0.32 0.00 0.00 0.00 0.32 0.47 0.40 0.28 0.00 0.30 0.00 0.26 0.88 0.00 0.00 0.20 0.00 0.00 0.15 0.50 0.39 0.00 0.54 0.00 0.42 0.00 0.36 0.65 0.60 K alternative_donor gro chr3R + chr3R_21867907_21868716 chr3R_21867987_21868716 chr3R_21868717_21869101;chr3R_21867852_21867906 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA K alternative_donor CG15309,RI_chrX_10102328_10103556,RI_chrX_10102328_10104750 chrX - chrX_10102328_10106185 chrX_10102328_10104040 chrX_10102228_10102327;chrX_10106186_10106379 13.39 NA NA 20.00 NA NA 0.00 16.67 16.67 NA NA 16.67 NA NA NA 12.50 NA 0.00 NA 11.11 NA 50.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA 20.00 NA NA NA NA NA 0.00 NA 14.29 NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA 0.00 K jcn_only_AA CG7220,RI_chr2R_6619302_6620085,RI_chr2R_6619302_6623271,RI_chr2R_6619302_6623324,chr2R_6619302_6619942.0,I_chr2R_6620302_6623271,I_chr2R_6622606_6624161,RI_chr2R_6624080_6624161 chr2R + chr2R_6619302_6623324;chr2R_6619302_6620085 chr2R_6619302_6624161 chr2R_6619202_6619301 95.45 98.08 94.92 97.17 97.44 100.00 93.67 95.60 93.40 100.00 95.45 96.67 93.10 98.53 97.14 94.19 92.00 95.83 98.21 96.53 92.50 86.30 91.95 94.55 95.74 90.20 96.70 95.95 95.58 96.63 92.00 92.31 97.09 96.39 92.86 84.76 98.08 97.73 95.08 95.62 95.92 98.37 90.70 93.88 90.91 92.81 95.00 91.40 91.73 92.75 94.29 100.00 96.43 96.88 96.55 90.16 91.76 93.53 K intron_retention RhoGEF3,I_chr3L_298140_298220 chr3L + chr3L_293186_298958 chr3L_293185_293186;chr3L_298958_298959 chr3L_292371_293185;chr3L_298959_299016 2.08 0.00 4.00 2.27 0.00 2.38 0.00 3.85 4.00 0.00 0.00 2.04 2.50 2.44 1.92 4.76 0.00 3.23 3.92 6.25 0.00 8.33 1.06 0.00 0.00 2.44 2.70 7.41 0.00 2.44 2.08 NA 6.67 3.08 2.86 5.00 0.00 4.44 0.00 0.00 NA 2.22 2.78 0.00 0.00 0.00 0.00 3.03 3.12 0.00 3.33 0.00 0.00 0.00 3.95 0.00 0.00 0.00 K cassette drongo,I_chr2L_837379_847733 chr2L - chr2L_835548_836545 chr2L_835548_835703;chr2L_836172_836545 chr2L_835704_836171 chr2L_835353_835547;chr2L_836546_837378 1.61 0.90 1.50 1.75 0.87 0.79 2.88 1.13 1.25 2.56 1.63 3.59 2.68 1.06 1.23 4.13 1.98 1.57 1.65 4.60 1.68 0.56 1.26 1.17 2.70 0.92 2.21 1.57 3.68 1.06 1.61 1.85 2.20 2.14 1.11 2.14 0.92 0.42 0.96 2.51 3.49 1.49 2.04 3.20 1.64 2.01 0.43 2.94 2.22 0.78 1.22 1.54 0.72 1.30 2.33 1.57 0.46 2.20 K cassette Ipk1 chr2R + chr2R_16760198_16762742 chr2R_16760198_16761155;chr2R_16761257_16762742 chr2R_16761156_16761256 chr2R_16760190_16760197;chr2R_16762743_16762750 90.00 100.00 100.00 77.78 NA 87.50 NA 87.50 92.31 NA NA 100.00 100.00 100.00 91.67 88.89 NA NA 85.71 94.44 100.00 NA 92.86 92.86 88.89 NA 88.89 NA NA 100.00 82.35 100.00 90.91 90.00 100.00 100.00 81.82 NA 83.33 76.47 88.89 87.50 85.71 77.78 72.73 83.33 100.00 94.12 90.00 80.00 100.00 NA 62.50 NA 90.00 88.89 100.00 88.89 K intron_retention MRP,F_chr2L_12727117_12736035 chr2L + chr2L_12739189_12743979 chr2L_12739188_12739189;chr2L_12743979_12743980 chr2L_12738807_12739188;chr2L_12743980_12744708 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention sda,I_chr3R_22742285_22742350,RI_chr3R_22750984_22752737 chr3R + chr3R_22769717_22769778 chr3R_22769716_22769717;chr3R_22769778_22769779 chr3R_22769549_22769716;chr3R_22769779_22769922 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 6.81 0.69 0.00 4.00 0.00 2.80 3.31 14.63 2.20 0.00 1.35 1.02 0.00 2.30 2.70 2.44 1.03 1.32 2.47 5.49 0.00 0.00 0.69 2.86 0.84 0.00 0.00 0.00 0.00 3.10 0.00 0.00 0.00 1.82 1.89 0.00 0.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2813977;chr2R_2814097_2814174;chr2R_2814327_2814894;chr2R_2815657_2816013;chr2R_2816342_2817327;chr2R_2817604_2817753 chr2R_2813978_2814096;chr2R_2814175_2814326;chr2R_2814895_2815656;chr2R_2816014_2816341;chr2R_2817328_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Atg18,I_chr3L_8182683_8182941 chr3L + chr3L_8181681_8182386 chr3L_8181680_8181681;chr3L_8182386_8182387 chr3L_8180913_8181680;chr3L_8182387_8182393 15.38 5.71 21.88 14.00 NA NA 15.62 18.60 22.92 NA NA 13.16 19.23 18.75 25.00 20.51 21.74 11.11 15.38 16.67 25.00 15.85 12.00 17.50 10.53 5.00 12.50 27.27 14.71 19.44 29.17 30.00 13.95 26.83 7.41 14.89 10.42 0.00 8.22 20.69 23.08 15.09 13.04 10.81 5.71 12.50 4.76 28.00 17.50 10.81 13.04 19.23 22.22 10.00 20.69 9.68 5.71 29.17 K alternative_donor CG17471,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1217104_1217333;chr4_1217104_1217302;chr4_1217104_1217383 chr4_1217104_1217473 chr4_1217009_1217103;chr4_1217474_1217480 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention Irc,I_chr3R_12830023_12830084,CG8907 chr3R + chr3R_12831999_12832055 chr3R_12831998_12831999;chr3R_12832055_12832056 chr3R_12831827_12831998;chr3R_12832056_12832223 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.34 0.00 0.00 0.18 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 K intron_retention CG17834 chr2L + chr2L_8537072_8537230 chr2L_8537071_8537072;chr2L_8537230_8537231 chr2L_8536894_8537071;chr2L_8537231_8537463 0.00 0.00 0.00 2.56 0.00 4.17 4.55 8.00 7.55 0.00 NA 2.86 NA 0.00 7.41 0.00 0.00 0.00 0.00 8.16 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 11.76 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention par-1,EFI_chr2R_15361473_15362032,RI_chr2R_15361473_15362035,I_chr2R_15361473_15366246,I_chr2R_15362147_15365120,F_chr2R_15362147_15365138,I_chr2R_15362147_15365165,RI_chr2R_15363358_15365120,I_chr2R_15363358_15366246,I_chr2R_15365210_15370456 chr2R + chr2R_15361473_15365138 chr2R_15361472_15361473;chr2R_15365138_15365139 chr2R_15361373_15361472;chr2R_15365139_15365146 1.48 0.00 4.41 1.89 0.00 1.47 0.95 0.63 2.16 6.52 0.00 1.40 1.79 0.00 0.00 1.63 1.96 0.00 2.60 1.54 0.00 2.44 4.00 0.00 1.47 0.00 1.49 8.57 2.44 0.00 0.00 0.00 3.08 1.48 0.00 0.00 2.13 1.59 2.01 1.38 0.00 2.34 0.00 0.00 0.00 0.00 1.61 3.39 2.22 2.25 2.59 3.12 4.44 4.00 0.00 0.00 0.00 2.86 K jcn_only_AA CG11155,I_chr4_1151213_1151903,I_chr4_1152220_1152710,I_chr4_1152585_1152687 chr4 + chr4_1154699_1155719 chr4_1154699_1154777 chr4_1154501_1154698;chr4_1155720_1155720 4.17 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.17 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG5674 chr2L + chr2L_17972004_17972262 chr2L_17972003_17972004;chr2L_17972262_17972263 chr2L_17971890_17972003;chr2L_17972263_17974832 44.95 53.33 41.67 NA 66.67 33.33 73.33 50.00 50.00 NA NA 43.48 NA 50.00 50.00 60.00 NA 54.55 61.54 43.48 72.73 36.36 34.62 30.00 NA NA 70.00 47.37 61.54 36.36 41.67 NA 40.00 39.13 29.41 NA 57.14 40.00 43.75 58.62 NA 40.00 NA 41.67 50.00 58.33 NA 35.00 46.15 40.00 54.55 41.67 33.33 NA 50.00 50.00 40.00 33.33 K alternative_acceptor gce chrX + chrX_15211516_15211645 chrX_15211516_15211580 chrX_15211376_15211515;chrX_15211646_15212206 4.55 4.00 4.65 3.19 3.33 3.92 25.61 4.44 4.65 5.56 12.50 7.79 12.50 6.52 4.17 4.55 6.45 4.55 4.76 4.41 4.35 8.16 5.06 4.29 7.55 13.73 4.88 1.64 7.77 4.10 2.13 3.23 4.80 2.82 5.26 1.94 2.60 4.17 4.29 4.64 7.50 5.68 0.00 4.44 4.76 4.95 1.92 6.29 7.41 4.84 5.80 2.86 3.64 0.00 3.17 3.28 4.35 3.68 K alternative_acceptor frtz chr2L - chr2L_1714427_1715138;chr2L_1714406_1715138 chr2L_1714474_1715138 chr2L_1715139_1715811;chr2L_1714173_1714405 100.00 92.86 90.00 76.92 90.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 75.00 100.00 100.00 95.65 100.00 100.00 95.45 93.75 100.00 100.00 100.00 100.00 92.86 100.00 87.50 100.00 100.00 100.00 90.00 91.67 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 94.44 90.91 100.00 81.82 100.00 90.00 91.67 85.71 K jcn_only_AA CG14814,I_chrX_1757739_1757803,I_chrX_1757755_1757801 chrX - chrX_1757739_1757801 chrX_1757755_1757801 chrX_1757802_1757901;chrX_1757655_1757738 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 7.69 NA NA 2.08 NA 0.00 3.33 0.00 NA 0.00 4.00 0.00 NA 3.12 0.00 4.00 NA NA 0.00 NA NA 0.00 4.35 NA 0.00 2.63 4.17 0.00 4.88 0.00 0.00 2.13 0.00 0.00 NA NA 0.00 3.45 NA 2.04 0.00 0.00 0.00 0.00 NA 3.23 0.00 NA NA 0.00 N cassette Dif,dorsal,RI_chr2L_17438018_17439189,I_chr2L_17442335_17442399,FI_chr2L_17449369_17450215,RI_chr2L_17450002_17450219 chr2L - chr2L_17438213_17441800 chr2L_17438213_17439189;chr2L_17439298_17441800 chr2L_17439190_17439297 chr2L_17438150_17438212;chr2L_17441801_17441879 100.00 90.14 100.00 36.92 100.00 100.00 70.21 85.00 100.00 100.00 100.00 80.00 41.94 100.00 100.00 100.00 82.35 100.00 100.00 92.24 100.00 91.67 91.45 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 92.93 100.00 100.00 100.00 91.51 91.25 91.75 81.42 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.36 100.00 83.91 91.89 87.04 100.00 100.00 100.00 100.00 100.00 100.00 K cassette CG32230,RI_chr3L_23332577_23334556,I_chr3L_23332781_23334557,RI_chr3L_23332781_23338942 chr3L + chr3L_23332577_23334556 chr3L_23332577_23332633;chr3L_23332781_23334556 chr3L_23332634_23332780 chr3L_23332530_23332576;chr3L_23334557_23334656 100.00 99.62 100.00 98.80 100.00 100.00 100.00 100.00 99.82 99.21 100.00 99.58 100.00 99.34 99.64 99.85 99.53 100.00 99.70 99.84 100.00 100.00 100.00 100.00 100.00 99.50 100.00 100.00 99.18 100.00 100.00 100.00 99.34 99.78 99.49 100.00 100.00 100.00 100.00 100.00 99.53 100.00 99.59 100.00 100.00 100.00 100.00 100.00 99.79 99.63 100.00 100.00 100.00 100.00 100.00 99.72 100.00 100.00 K alternative_acceptor nct,I_chr3R_20679262_20679308 chr3R + chr3R_20679262_20679308;chr3R_20679262_20679333 chr3R_20679262_20679324 chr3R_20679193_20679261;chr3R_20679334_20679393 95.95 96.51 95.65 97.27 98.21 94.44 95.88 97.92 95.92 100.00 95.52 95.69 94.34 97.83 96.88 95.95 100.00 92.31 98.18 95.08 100.00 94.67 95.31 93.97 96.67 98.18 95.41 92.86 93.06 95.52 89.47 98.00 94.29 96.63 98.11 93.10 93.81 94.05 97.32 94.38 96.55 97.48 98.00 96.63 90.16 100.00 95.65 97.56 96.55 94.95 96.00 92.98 96.30 96.77 97.06 95.38 95.35 97.44 K intron_retention CG8080,REI_chr2R_4979159_4979234,I_chr2R_4979276_4979936 chr2R - chr2R_4978255_4978315 chr2R_4978254_4978255;chr2R_4978315_4978316 chr2R_4978048_4978254;chr2R_4978316_4978541 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 9.09 0.00 NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3420 chr2R - chr2R_2643987_2644047 chr2R_2643986_2643987;chr2R_2644047_2644048 chr2R_2643765_2643986;chr2R_2644048_2644141 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 NA 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pak3 chr3R - chr3R_12272857_12276688 chr3R_12272856_12272857;chr3R_12276688_12276689 chr3R_12272468_12272856;chr3R_12276689_12277858 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.88 0.00 1.27 0.00 0.00 0.00 1.20 1.15 1.67 0.00 0.00 0.00 8.24 0.95 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 K intron_retention I_chr3L_212783_212843,Kaz1-ORFA,Kaz1-ORFB,Kaz1-ORFA_Kaz1-ORFB chr3L + chr3L_217776_217854 chr3L_217775_217776;chr3L_217854_217855 chr3L_217497_217775;chr3L_217855_218053 6.21 4.17 0.00 16.33 6.67 0.00 5.13 6.49 6.12 7.41 5.00 9.33 5.36 8.00 8.33 10.00 8.00 6.12 0.00 6.21 4.88 22.22 10.71 4.26 9.09 12.50 9.09 NA 13.04 2.94 2.90 2.70 8.45 8.60 10.00 NA 4.88 3.57 5.26 4.62 4.65 8.08 9.76 11.76 5.45 9.46 3.92 16.67 6.25 3.77 11.63 0.00 0.00 4.26 8.57 6.38 6.10 4.35 K intron_retention rogdi chr3L + chr3L_17045979_17046054 chr3L_17045978_17045979;chr3L_17046054_17046055 chr3L_17045821_17045978;chr3L_17046055_17046385 0.00 2.17 0.00 6.52 0.00 0.00 1.92 3.57 1.11 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 6.25 0.00 3.49 0.00 0.00 3.57 0.00 0.00 0.00 3.77 0.00 14.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.82 0.00 1.82 0.00 0.00 0.00 0.00 4.26 3.12 3.12 0.00 NA 1.67 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG14194 chrX + chrX_19088052_19088456;chrX_19088052_19088528 chrX_19088052_19088400 chrX_19087981_19088051;chrX_19088529_19089031 0.88 1.05 1.11 2.63 2.44 0.00 0.81 0.78 0.00 0.00 1.45 0.62 0.00 0.00 2.70 0.00 0.00 1.22 0.00 1.42 2.22 0.99 0.80 3.60 0.00 2.33 0.00 0.00 1.19 0.00 0.00 0.00 1.03 0.75 2.99 0.00 1.15 0.00 2.16 1.96 0.00 1.16 0.00 1.05 0.00 0.00 1.12 4.35 0.00 1.18 0.88 2.94 1.45 3.49 2.22 0.00 4.44 0.00 K intron_retention CG10053,RI_chr3R_3075676_3075741 chr3R + chr3R_3073019_3073087 chr3R_3073018_3073019;chr3R_3073087_3073088 chr3R_3072969_3073018;chr3R_3073088_3073903 17.65 NA NA NA NA NA 12.50 NA 25.00 NA NA 14.29 NA NA 26.67 33.33 NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA 60.00 NA 12.50 NA NA NA NA NA NA 17.65 NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA 6.67 K intron_retention CG9253,snoRNA:Me18S-A469 chr2L + chr2L_21143823_21144011 chr2L_21143822_21143823;chr2L_21144011_21144012 chr2L_21143564_21143822;chr2L_21144012_21145146 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention E2f,CG6353 chr3R - chr3R_17452347_17452413 chr3R_17452346_17452347;chr3R_17452413_17452414 chr3R_17451746_17452346;chr3R_17452414_17452572 78.79 81.58 80.00 92.05 84.44 78.79 80.17 87.42 76.53 76.00 64.91 87.32 78.95 75.31 79.27 84.82 79.41 75.00 79.27 78.52 75.00 64.58 76.38 78.75 88.71 87.84 83.72 85.96 82.19 77.78 83.52 78.43 78.42 80.28 81.97 94.62 76.85 73.02 68.89 76.77 78.75 84.03 78.79 76.04 65.52 79.38 71.43 83.33 85.21 69.23 70.07 74.68 68.00 69.64 77.55 80.60 74.07 78.95 K intron_retention PR2 chr2R - chr2R_9030823_9030879 chr2R_9030822_9030823;chr2R_9030879_9030880 chr2R_9030337_9030822;chr2R_9030880_9032193 0.00 0.00 0.00 1.61 0.00 0.00 0.00 1.41 0.85 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Khc-73 chr2R - chr2R_11407842_11409346 chr2R_11407842_11407921 chr2R_11407431_11407841 0.00 0.00 0.00 3.45 0.00 0.00 1.52 2.41 1.60 0.00 0.00 0.00 1.92 1.85 2.08 0.00 0.00 1.75 2.08 0.94 0.00 8.62 0.00 0.00 2.44 0.00 0.00 5.88 3.33 3.85 0.00 3.57 0.00 1.35 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 5.71 0.00 0.00 2.27 2.56 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette Nc73EF,F_chr3L_16952838_16955936,CE_chr3L_16952842_16955936,I_chr3L_16952985_16955434,I_chr3L_16953768_16954599 chr3L + chr3L_16953768_16955434 chr3L_16953768_16954599;chr3L_16954703_16954907;chr3L_16954914_16955434 chr3L_16954600_16954702;chr3L_16954908_16954913 chr3L_16953746_16953767;chr3L_16955435_16955513 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Xrp1,I_chr3R_14741648_14750799,I_chr3R_14750298_14750799 chr3R + chr3R_14744348_14750799 chr3R_14744347_14744348;chr3R_14750799_14750800 chr3R_14744211_14744347;chr3R_14750800_14750899 80.00 NA NA 87.50 NA NA 80.00 NA 63.64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 93.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG32103,I_chr3L_12398261_12403200 chr3L - chr3L_12407187_12407805 chr3L_12407187_12407801 chr3L_12407030_12407186;chr3L_12407806_12407901 22.05 15.38 NA 22.22 NA 12.50 36.36 30.00 13.51 NA 21.43 18.75 NA 18.75 25.00 26.92 23.08 6.25 23.08 25.00 14.29 20.00 24.00 25.00 NA 25.00 17.65 NA NA 15.38 16.67 NA NA 27.27 15.79 14.29 21.43 NA 25.00 15.38 NA 29.03 NA 26.67 NA 30.77 36.36 21.05 21.88 NA 28.57 33.33 13.33 NA 25.00 NA NA 20.00 K alternative_donor CG6904,I_chr3R_10970962_10971422,I_chr3R_10970962_10972151,I_chr3R_10970962_10972185,I_chr3R_10970962_10972512,I_chr3R_10970962_10972522 chr3R - chr3R_10970962_10972786 chr3R_10970962_10972422 chr3R_10970862_10970961;chr3R_10972787_10973150 84.52 NA 100.00 87.50 NA NA 66.67 100.00 88.89 NA 75.00 100.00 NA NA NA 33.33 NA 80.00 75.00 100.00 NA 100.00 83.33 NA NA NA 83.33 100.00 66.67 NA 75.00 NA 83.33 100.00 75.00 NA NA NA NA 100.00 100.00 85.71 NA NA NA NA NA 80.00 75.00 100.00 NA NA NA NA 50.00 NA NA 100.00 K intron_retention CG12084,I_chr3L_1494947_1496080,RI_chr3L_1499880_1501350 chr3L - chr3L_1494269_1494589 chr3L_1494268_1494269;chr3L_1494589_1494590 chr3L_1493329_1494268;chr3L_1494590_1494946 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 4.00 1.67 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 K jcn_only_AD rin,I_chr3R_9476825_9476895 chr3R + chr3R_9472992_9473104;chr3R_9472923_9473104 chr3R_9473004_9473104 chr3R_9473105_9473268;chr3R_9472709_9472922 0.00 2.17 0.00 0.86 0.00 0.00 0.44 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 3.57 2.63 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.98 0.65 0.00 0.00 NA 0.00 0.00 1.14 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.22 K intron_retention CG3918 chrX + chrX_6418828_6418898 chrX_6418827_6418828;chrX_6418898_6418899 chrX_6418505_6418827;chrX_6418899_6419672 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive ens,I_chr3L_4130719_4131120 chr3L - chr3L_4127163_4128613,chr3L_4128974_4131120;chr3L_4127163_4130388,chr3L_4130644_4131120 chr3L_4127163_4129650,chr3L_4129789_4131120 chr3L_4128614_4128973;chr3L_4130389_4130643 chr3L_4129651_4129788 chr3L_4126989_4127162;chr3L_4131121_4131220 97.30 96.77 95.83 98.68 97.87 97.96 98.21 98.55 98.21 97.62 98.15 97.67 100.00 97.67 96.15 93.55 97.92 97.30 100.00 98.90 97.73 98.17 97.96 95.83 98.33 100.00 97.22 96.30 93.44 96.92 96.83 94.29 96.34 96.20 94.74 95.89 98.26 96.34 96.51 98.21 87.80 97.30 95.12 97.59 94.83 94.44 95.35 97.67 97.65 100.00 97.73 96.67 97.62 96.67 98.11 96.30 96.43 95.56 K intron_retention Hsc70Cb chr3L + chr3L_14033695_14034526 chr3L_14033694_14033695;chr3L_14034526_14034527 chr3L_14033164_14033694;chr3L_14034527_14034622 0.00 NA NA NA NA NA NA 0.00 4.55 NA 13.33 0.00 NA NA NA 6.67 NA 0.00 NA 0.00 NA NA 0.00 NA NA NA NA 14.29 NA NA NA NA NA 14.29 NA 0.00 6.67 NA 0.00 0.00 NA 9.09 NA NA NA 0.00 0.00 NA 4.17 NA 0.00 NA NA NA NA NA NA NA K intron_retention eIF-5A,I_chr2R_19945430_19946454,I_chr2R_19945576_19946006,I_chr2R_19945723_19946006,I_chr2R_19945783_19946006,I_chr2R_19945852_19946006,I_chr2R_19945875_19946006,I_chr2R_19945921_19946006,I_chr2R_19946299_19946454,I_chr2R_19946657_19946733,I_chr2R_19948517_19948682 chr2R + chr2R_19945426_19946006 chr2R_19945425_19945426;chr2R_19946006_19946007 chr2R_19945343_19945425;chr2R_19946007_19946106 0.56 0.00 0.00 4.31 2.94 0.00 2.15 2.26 1.90 0.00 0.00 0.90 0.00 2.35 0.00 2.44 0.00 0.00 2.13 1.03 3.23 7.27 0.00 10.34 0.00 1.72 6.67 0.00 3.39 0.00 0.00 0.00 0.00 0.00 2.27 0.00 4.76 5.88 0.00 1.72 0.00 3.28 1.47 5.13 0.81 0.00 0.00 0.00 0.56 12.50 8.33 0.00 4.44 0.00 0.00 0.00 2.04 0.00 K intron_retention CG6340,I_chrX_15402291_15403750 chrX + chrX_15378926_15379154 chrX_15378925_15378926;chrX_15379154_15379155 chrX_15378907_15378925;chrX_15379155_15379301 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 63.64 NA NA NA NA NA NA NA NA NA 58.33 NA NA NA NA NA NA 60.00 NA 60.00 NA NA NA 50.00 NA 46.15 NA NA 63.64 NA NA NA NA 66.67 50.00 41.18 K intron_retention CG8042,I_chr3L_7967277_7967400,I_chr3L_7968788_7968857 chr3L - chr3L_7967863_7967919 chr3L_7967862_7967863;chr3L_7967919_7967920 chr3L_7967733_7967862;chr3L_7967920_7968092 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 3.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8680 chr2L - chr2L_5099914_5100009 chr2L_5099913_5099914;chr2L_5100009_5100010 chr2L_5099737_5099913;chr2L_5100010_5100214 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 K intron_retention CG14232,meso18E chrX - chrX_19597864_19597921 chrX_19597863_19597864;chrX_19597921_19597922 chrX_19597436_19597863;chrX_19597922_19598095 0.00 2.33 0.00 2.13 5.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 3.23 0.00 0.00 3.70 0.00 3.77 0.00 0.00 2.50 1.52 0.00 0.00 0.00 5.13 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 4.29 0.00 1.43 1.28 0.00 0.00 0.00 0.00 0.00 3.39 2.56 0.00 1.96 0.00 3.28 0.00 0.00 0.00 0.00 0.00 4.17 0.00 K alternative_donor Tango5,noncoding_22970,I_chrX_10659836_10661185 chrX - chrX_10656468_10658202;chrX_10656468_10658389 chrX_10656468_10658117 chrX_10656442_10656467;chrX_10658390_10658400 9.09 23.08 4.76 4.55 11.76 16.67 26.09 12.00 9.09 9.09 12.50 8.11 7.69 6.25 3.57 9.09 6.25 6.25 4.76 8.00 5.88 8.33 9.52 4.55 7.14 15.00 20.00 16.67 17.65 13.33 12.00 0.00 0.00 6.90 0.00 10.00 9.09 5.56 10.00 11.11 0.00 9.76 6.67 12.50 0.00 20.00 17.65 7.14 11.43 9.09 18.75 7.14 0.00 16.67 8.33 9.09 10.00 11.11 K alternative_donor CG42507,Trl,I_chr3L_14745733_14745798,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14744876_14746433;chr3L_14744876_14746310 chr3L_14744876_14745798 chr3L_14744367_14744875;chr3L_14746434_14746571 47.14 53.57 42.06 39.13 39.77 40.00 43.18 41.38 46.80 48.86 38.64 43.75 52.88 47.37 40.52 47.96 42.86 42.06 45.12 39.02 34.57 54.46 38.46 60.51 54.20 45.00 45.89 46.96 55.00 51.69 40.43 53.78 58.39 43.75 51.45 52.49 49.48 48.82 47.15 40.63 56.25 47.06 47.14 43.78 58.86 47.81 48.81 55.60 40.10 56.99 50.30 45.83 50.30 54.07 36.00 48.90 45.71 54.85 K jcn_only_AD GstS1,I_chr2R_12981955_12982033,I_chr2R_12981964_12982021 chr2R - chr2R_12981964_12982033 chr2R_12981964_12982021 chr2R_12981864_12981963;chr2R_12982034_12982121 3.33 3.85 NA 10.71 NA NA 4.55 NA 2.86 0.00 4.17 3.45 NA NA 8.70 4.76 NA NA 4.55 2.50 NA 0.00 0.00 6.90 NA 0.00 NA 0.00 8.00 0.00 NA NA 0.00 NA NA NA 4.55 5.00 3.33 3.85 13.04 5.13 NA 0.00 2.86 7.14 0.00 NA 3.03 0.00 0.00 NA 0.00 4.55 12.00 0.00 NA 0.00 K alternative_donor CG32803,I_chrX_1795648_1795700,RI_chrX_1795648_1795745,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1795648_1795832 chrX_1795648_1795745 chrX_1795548_1795647;chrX_1795833_1795845 7.69 9.80 4.76 9.30 7.41 8.89 10.81 6.35 4.85 6.25 4.00 7.00 4.55 6.52 9.09 6.67 5.71 17.24 7.69 6.40 5.77 6.12 6.25 9.86 8.89 14.89 9.72 13.64 28.57 12.77 3.49 7.69 6.67 5.13 5.88 9.76 9.52 8.77 5.71 8.00 9.52 9.09 6.45 6.56 6.67 5.81 7.44 14.63 7.87 10.53 10.13 4.55 8.16 8.64 7.69 5.88 8.75 7.69 K intron_retention CG34348 chrX + chrX_11237946_11238008 chrX_11237945_11237946;chrX_11238008_11238009 chrX_11237283_11237945;chrX_11238009_11238769 0.00 3.23 0.00 15.38 0.00 0.00 0.00 3.70 0.00 NA 0.00 0.00 0.00 0.00 4.76 10.00 NA 8.33 0.00 1.61 0.00 5.88 3.39 4.65 0.00 NA 7.50 12.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 6.25 0.00 0.00 4.35 0.00 0.00 0.00 NA 0.00 0.00 3.03 2.38 0.00 0.00 0.00 4.88 0.00 0.00 0.00 0.00 0.00 1.92 4.44 K intron_retention CG12304 chr3L + chr3L_15577196_15577386 chr3L_15577195_15577196;chr3L_15577386_15577387 chr3L_15577127_15577195;chr3L_15577387_15577539 0.00 0.00 0.00 6.25 0.00 NA 6.67 0.00 2.44 NA NA 0.00 NA 0.00 0.00 2.38 0.00 0.00 NA 0.00 0.00 NA 7.41 0.00 NA 0.00 0.00 22.58 0.00 4.17 0.00 0.00 8.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.70 0.00 0.00 0.00 8.33 0.00 0.00 0.00 K intron_retention CG17665 chr2R - chr2R_125229_125523 chr2R_125228_125229;chr2R_125523_125524 chr2R_125223_125228;chr2R_125524_125714 0.00 0.00 0.00 7.14 NA 4.76 4.17 3.08 0.00 NA 0.00 5.77 0.00 0.00 8.70 3.28 0.00 0.00 5.26 0.00 NA NA 0.00 0.00 5.00 0.00 0.00 NA 0.00 5.88 0.00 0.00 NA 3.08 0.00 0.00 NA NA NA 8.33 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 3.08 NA 0.00 NA NA NA 0.00 0.00 0.00 6.90 K intron_retention CG14438 chrX + chrX_6650734_6654020 chrX_6650733_6650734;chrX_6654020_6654021 chrX_6650619_6650733;chrX_6654021_6654243 21.43 NA NA 29.41 NA NA 25.00 NA NA NA NA 26.32 NA NA NA 33.33 NA NA NA 14.29 NA 25.00 21.05 NA NA NA NA NA 23.08 NA 21.43 NA NA NA NA 21.43 NA NA NA 6.67 NA 18.75 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA K intron_retention mei-41 chrX + chrX_16288292_16288348 chrX_16288291_16288292;chrX_16288348_16288349 chrX_16286100_16288291;chrX_16288349_16288642 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA 5.56 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.56 NA 12.50 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention CG31716,I_chr2L_10397648_10398034 chr2L + chr2L_10398393_10398443 chr2L_10398392_10398393;chr2L_10398443_10398444 chr2L_10398279_10398392;chr2L_10398444_10398593 3.27 4.21 0.00 2.40 4.88 2.94 6.90 4.32 6.21 0.00 1.23 4.85 1.02 3.23 4.35 3.31 2.60 6.90 5.06 5.42 6.25 2.15 2.31 0.00 0.00 2.67 2.75 9.68 2.56 3.57 6.45 3.45 5.62 4.41 4.05 4.60 4.72 0.00 1.03 2.86 4.00 2.86 2.70 1.30 0.00 3.57 NA 3.51 3.85 5.00 0.69 2.94 8.89 0.00 3.81 1.47 1.59 2.38 K alternative_donor Tis11,CR33963 chrX + chrX_12553470_12554566 chrX_12553582_12554566 chrX_12554567_12554665;chrX_12553442_12553469 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 NA 97.56 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K intron_retention Vap-33-1 chrX + chrX_3843406_3843513 chrX_3843405_3843406;chrX_3843513_3843514 chrX_3843337_3843405;chrX_3843514_3843746 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 2.60 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 N intron_retention CG17273,I_chr3R_16652066_16655997,REI_chr3R_16652421_16653701 chr3R - chr3R_16651716_16653701 chr3R_16651715_16651716;chr3R_16653701_16653702 chr3R_16651355_16651715;chr3R_16653702_16653801 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA 50.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA 100.00 K alternative_acceptor CG42595,I_chr2RHet_3155517_3174709,RI_chr2RHet_3175044_3179353,RI_chr2RHet_3179300_3179586,I_chr2RHet_3179481_3179586 chr2RHet - chr2RHet_3179297_3179353 chr2RHet_3179300_3179353 chr2RHet_3179354_3179453;chr2RHet_3179200_3179296 60.00 75.00 55.56 59.26 NA 60.00 60.00 57.14 65.85 NA NA 64.29 58.82 63.64 NA 63.16 NA NA 66.67 55.00 NA NA 60.00 50.00 NA NA NA NA NA NA 71.43 NA NA 51.72 NA NA NA NA NA 46.15 NA 54.17 66.67 73.33 NA NA NA 60.00 61.11 NA 50.00 NA NA NA NA NA NA NA K intron_retention CG11695,RI_chrX_11473566_11473702,I_chrX_11475074_11475402 chrX + chrX_11471112_11471177 chrX_11471111_11471112;chrX_11471177_11471178 chrX_11470906_11471111;chrX_11471178_11471851 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Syx4,I_chrX_2635555_2635621,I_chrX_2636831_2636971 chrX - chrX_2635530_2635621 chrX_2635555_2635621 chrX_2635622_2635721;chrX_2635456_2635529 5.71 6.45 7.69 0.00 3.12 0.00 9.09 7.69 9.46 NA 12.50 5.71 0.00 7.50 5.56 6.00 5.71 3.45 8.70 4.00 4.76 15.38 4.35 10.00 NA 12.00 4.17 NA NA 4.17 14.00 9.68 4.35 5.66 8.70 NA 10.00 4.76 5.56 3.33 5.56 5.71 6.98 4.76 2.38 5.56 5.56 5.13 7.25 6.82 6.67 4.55 NA 6.67 4.65 3.23 8.33 8.33 K alternative_acceptor CG5850,I_chr2L_9963013_9963451 chr2L - chr2L_9961615_9961728 chr2L_9961618_9961728 chr2L_9961729_9961775;chr2L_9961359_9961614 60.76 61.54 53.03 56.72 65.38 65.85 59.68 62.07 62.50 68.00 59.09 56.44 58.82 60.47 65.31 64.58 62.07 63.27 59.46 62.00 62.26 61.11 59.02 63.33 57.14 67.74 62.96 52.38 67.35 62.26 51.92 51.92 46.74 68.12 61.54 47.37 58.33 54.55 70.00 60.76 60.98 59.80 61.29 65.12 57.29 53.33 56.52 55.10 58.62 50.00 62.30 54.55 53.70 61.40 68.18 61.76 59.02 58.57 K jcn_only_AA CG32344,RI_chr3L_321550_321914,I_chr3L_326540_326703,RI_chr3L_326725_326866 chr3L - chr3L_321364_321914;chr3L_321550_321914 chr3L_321361_321914 chr3L_321915_322014;chr3L_321242_321360 3.54 0.00 6.67 4.00 NA 7.69 0.00 4.00 1.96 NA 0.00 4.84 3.12 2.94 3.70 6.90 NA 8.00 5.00 2.00 0.00 4.55 7.41 2.56 NA 3.23 2.78 NA NA 4.76 5.41 3.23 2.22 5.88 10.00 NA NA 0.00 16.00 2.63 3.70 5.56 0.00 NA 2.70 2.63 2.94 4.76 3.39 0.00 5.00 5.00 2.56 0.00 4.65 6.38 2.67 4.26 K jcn_only_AA rin,I_chr3R_9476825_9476895 chr3R + chr3R_9472923_9473104;chr3R_9472923_9473143 chr3R_9472923_9474639 chr3R_9472709_9472922 44.91 42.77 43.00 75.30 59.87 47.34 36.00 33.54 42.00 45.28 47.57 30.00 32.31 37.39 43.88 38.13 43.73 60.92 36.27 40.94 44.44 39.25 52.49 64.66 55.00 44.00 78.12 69.60 76.79 58.46 36.24 43.48 40.24 37.01 58.06 66.35 65.85 60.83 64.29 37.04 47.06 39.44 31.86 53.03 54.69 NA 57.61 44.55 40.95 52.70 54.65 48.42 60.00 62.79 34.50 36.92 52.78 33.33 K alternative_last_exon fau,I_chr3R_6597190_6602898,I_chr3R_6599728_6602898,RI_chr3R_6601017_6602898 chr3R - chr3R_6598884_6602898 chr3R_6599741_6602898,chr3R_6600788_6602898 chr3R_6597839_6598883 chr3R_6598919_6599740 chr3R_6602899_6602998 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 50.00 K intron_retention Nhe3,I_chr2L_6680525_6680670 chr2L - chr2L_6678757_6679985 chr2L_6678756_6678757;chr2L_6679985_6679986 chr2L_6677873_6678756;chr2L_6679986_6680114 66.67 66.67 NA 46.15 NA NA 46.67 37.50 50.00 63.64 NA 70.59 NA NA 45.45 29.41 25.00 NA 40.00 70.83 NA 84.85 58.82 78.26 73.33 NA 81.82 92.86 83.33 80.00 NA 76.47 61.90 25.00 66.67 71.43 61.54 66.67 62.50 75.00 73.33 47.62 NA 81.82 94.74 75.00 52.17 81.82 52.00 75.00 72.00 78.57 50.00 94.12 NA 60.87 57.14 78.95 K intron_retention CG18619,I_chr2L_10264634_10264770,RI_chr2L_10265562_10265628 chr2L + chr2L_10264890_10264946 chr2L_10264889_10264890;chr2L_10264946_10264947 chr2L_10264822_10264889;chr2L_10264947_10265012 0.00 0.00 2.08 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 1.79 2.44 0.00 0.00 0.00 1.64 0.00 4.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.46 0.00 0.00 2.00 0.00 0.00 2.20 1.90 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 K alternative_donor lig,CI_chr2R_3962006_3962916,I_chr2R_3962357_3962977,RI_chr2R_3962875_3962977 chr2R + chr2R_3961910_3962977;chr2R_3962006_3962977 chr2R_3961577_3962977 chr2R_3962978_3963016;chr2R_3961479_3961576 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.18 0.23 0.00 0.00 0.32 0.00 0.29 0.24 0.00 0.35 0.17 0.00 0.34 0.29 0.14 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.38 0.00 K intron_retention CG3164,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_124921_125076 chr2L_124920_124921;chr2L_125076_125077 chr2L_124087_124920;chr2L_125077_125257 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.67 0.00 0.00 0.00 0.00 0.92 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Zn72D,RF_chr3L_16100887_16102721,I_chr3L_16105199_16105253 chr3L - chr3L_16105199_16105299;chr3L_16105199_16105253;chr3L_16105199_16105431 chr3L_16105199_16105318 chr3L_16105099_16105198;chr3L_16105432_16105487 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 1.92 10.00 0.00 0.00 0.00 5.56 6.25 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 NA NA 2.78 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 4.44 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 K alternative_acceptor Pak,RI_chr3R_2181143_2181934 chr3R + chr3R_2181143_2182154 chr3R_2181143_2181934 chr3R_2181043_2181142;chr3R_2182155_2182320 0.00 0.00 0.00 1.18 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 3.60 0.70 0.75 0.00 0.00 0.74 5.56 1.03 0.00 0.00 0.00 1.01 0.00 1.09 0.00 0.00 0.00 0.00 1.60 0.00 0.61 0.00 0.81 0.00 0.00 0.00 2.02 0.00 0.00 0.83 0.00 0.00 0.00 0.00 1.52 0.00 0.00 K jcn_only_AD CG7033,I_chrX_8985376_8985442 chrX + chrX_8985211_8985442 chrX_8985376_8985442 chrX_8985443_8985542;chrX_8984521_8985210 0.70 0.11 1.13 2.24 0.70 0.36 3.59 0.71 1.48 0.46 1.69 1.44 1.21 1.26 0.94 1.22 1.83 1.33 3.03 1.25 0.69 0.42 0.38 0.23 0.25 1.91 0.11 0.21 0.28 0.74 0.90 0.64 0.24 1.68 0.25 0.10 0.41 0.35 0.51 0.79 0.52 1.06 1.06 0.22 1.01 0.53 0.78 0.99 1.53 0.25 0.08 0.77 0.50 0.19 1.24 0.70 0.38 0.62 K alternative_donor Df31,RE_chr2L_21628206_21629662,I_chr2L_21628206_21629666,I_chr2L_21628210_21628515,I_chr2L_21628210_21628944,I_chr2L_21628210_21629216,EI_chr2L_21628210_21629715,REI_chr2L_21628210_21629884,I_chr2L_21628224_21629666,I_chr2L_21628734_21629666 chr2L - chr2L_21628210_21629216;chr2L_21628210_21629666;chr2L_21628210_21628515;chr2L_21628210_21628944;chr2L_21628210_21629715 chr2L_21628210_21629884 chr2L_21628124_21628209;chr2L_21629885_21629918 0.35 0.30 0.34 0.17 1.15 0.41 0.10 0.45 0.38 0.40 0.19 0.65 0.65 0.30 0.30 0.08 0.16 0.38 0.12 0.28 0.20 1.94 0.10 0.14 0.00 0.33 0.15 0.43 3.62 0.77 0.16 1.71 1.94 0.50 0.20 0.00 0.59 0.18 0.41 2.48 1.78 0.58 0.61 0.82 1.35 0.61 0.31 2.05 0.35 0.27 0.00 0.15 0.40 0.19 0.93 0.15 0.16 0.94 K jcn_only_AA CG7029,I_chr3R_18617723_18618108 chr3R + chr3R_18617723_18617982 chr3R_18617723_18617979 chr3R_18617623_18617722;chr3R_18617983_18618028 98.00 98.53 96.00 100.00 97.78 100.00 98.11 98.67 99.17 94.74 96.77 93.41 93.94 100.00 96.30 97.62 100.00 98.00 100.00 95.60 97.67 96.12 98.13 96.43 96.26 100.00 95.74 97.73 98.46 100.00 98.11 100.00 100.00 96.25 100.00 97.09 97.17 96.20 96.30 98.86 97.44 97.03 100.00 96.67 96.67 100.00 100.00 98.36 93.94 96.30 95.96 98.00 100.00 96.88 98.18 100.00 100.00 98.63 K jcn_only_AD Synd chr3R + chr3R_16658596_16660946 chr3R_16658617_16660946 chr3R_16660947_16661053;chr3R_16658589_16658595 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 1.75 0.86 0.00 0.00 0.00 0.00 0.00 2.90 2.50 0.00 6.98 0.00 0.00 0.00 0.00 1.12 2.33 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 K alternative_last_exon E_chr2RHet_2881760_2912543,eIF-4B,I_chr2RHet_2903246_2912532,I_chr2RHet_2912605_2917250 chr2RHet + chr2RHet_2901839_2902098,chr2RHet_2901839_2902093 chr2RHet_2901839_2901902 chr2RHet_2902099_2903245 chr2RHet_2901903_2902033 chr2RHet_2901816_2901838 0.38 0.84 0.76 0.71 0.00 0.00 0.38 0.64 0.90 2.27 0.00 0.39 0.51 0.00 0.00 0.41 0.78 0.00 0.00 0.38 0.00 0.00 0.00 0.85 0.00 0.83 0.74 0.00 2.35 1.05 1.67 0.99 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.63 0.74 0.37 0.00 1.50 0.00 0.57 0.71 1.77 0.32 1.50 0.68 1.00 0.00 0.00 0.00 0.81 0.00 0.35 K multi_cassette Rpb4 chr3R - chr3R_14079178_14081038 chr3R_14079178_14079247;chr3R_14079515_14079574;chr3R_14080039_14080096;chr3R_14080914_14081038 chr3R_14079248_14079514;chr3R_14079575_14080038;chr3R_14080097_14080913 chr3R_14078997_14079177;chr3R_14081039_14081173 40.00 44.44 35.71 40.00 50.00 50.00 77.78 35.29 42.86 42.86 50.00 38.10 40.00 44.44 36.36 43.75 36.36 41.67 80.00 56.52 36.36 63.64 30.43 33.33 36.36 36.36 33.33 57.14 60.00 41.67 65.00 30.43 40.00 47.06 35.71 33.33 70.00 55.56 52.94 42.86 46.15 33.33 30.00 55.56 69.23 26.92 37.50 56.25 34.62 25.00 36.36 45.45 26.67 33.33 45.45 25.00 33.33 34.48 K intron_retention CG31673,RI_chr2L_20830210_20830280 chr2L + chr2L_20830613_20830670 chr2L_20830612_20830613;chr2L_20830670_20830671 chr2L_20830281_20830612;chr2L_20830671_20830793 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 1.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 1.32 5.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 K alternative_donor Art3,I_chr3R_11054902_11054955 chr3R - chr3R_11054902_11054955;chr3R_11054902_11054972 chr3R_11054902_11054965 chr3R_11054802_11054901;chr3R_11054973_11055055 94.74 100.00 100.00 94.12 100.00 100.00 95.00 96.00 97.22 100.00 100.00 93.10 88.89 92.31 93.33 91.67 NA 100.00 100.00 93.75 92.86 100.00 90.91 100.00 92.31 NA 86.36 100.00 100.00 90.00 72.41 90.91 91.67 91.30 92.86 90.91 96.00 100.00 95.83 96.67 77.78 93.55 100.00 96.15 100.00 90.91 95.65 90.91 92.86 90.91 96.55 100.00 94.44 95.45 92.31 90.00 97.73 94.74 K intron_retention ens,I_chr3L_4130719_4131120 chr3L - chr3L_4127163_4129650 chr3L_4127162_4127163;chr3L_4129650_4129651 chr3L_4126989_4127162;chr3L_4129651_4129788 0.00 0.00 1.72 5.75 0.00 0.00 3.17 2.70 1.55 0.00 0.00 5.71 0.00 3.92 0.00 0.00 0.00 0.00 0.00 1.75 0.00 1.27 0.00 3.53 1.33 0.00 0.00 0.00 3.08 2.56 2.90 0.00 0.95 3.90 2.78 0.00 0.00 0.90 0.00 3.17 0.00 0.82 0.00 1.25 0.00 0.00 0.00 7.53 4.04 2.56 2.88 0.00 0.00 0.00 0.00 1.33 0.00 0.00 K intron_retention RI_chr2R_12650846_12659758,Sod2 chr2R - chr2R_12661315_12661368 chr2R_12661314_12661315;chr2R_12661368_12661369 chr2R_12661260_12661314;chr2R_12661369_12661392 99.46 98.88 100.00 99.35 98.84 100.00 99.19 98.70 99.55 100.00 100.00 98.38 98.89 98.90 99.00 100.00 100.00 100.00 100.00 99.42 98.92 100.00 98.28 100.00 100.00 98.88 100.00 100.00 97.56 100.00 100.00 100.00 98.48 100.00 97.44 100.00 98.89 100.00 97.67 98.59 97.37 99.46 98.53 100.00 100.00 98.72 98.80 98.00 99.32 100.00 100.00 98.00 100.00 100.00 100.00 100.00 99.10 97.94 K cassette Chro,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22871119_22871733 chr3L_22871119_22871250;chr3L_22871326_22871733 chr3L_22871251_22871325 chr3L_22871037_22871118;chr3L_22871734_22871779 20.00 15.38 16.67 16.67 NA 16.67 6.67 16.67 26.32 NA NA 15.38 17.65 21.05 29.41 25.71 NA NA 27.78 20.00 NA NA 22.22 27.27 NA 18.75 NA NA 7.69 NA 12.00 23.08 40.00 22.73 20.00 7.69 36.36 NA 36.36 31.25 14.29 16.00 36.36 18.18 NA 15.00 NA 12.50 23.33 35.71 9.52 20.00 NA 35.71 26.09 21.43 NA 18.18 K cassette CG11665,I_chr2R_1530001_1531096,RI_chr2R_1535330_1540011 chr2R - chr2R_1531547_1540003 chr2R_1531547_1535226;chr2R_1535330_1540003 chr2R_1535227_1535329 chr2R_1531322_1531546;chr2R_1540004_1540300 100.00 96.15 96.88 100.00 100.00 100.00 96.97 98.86 98.99 88.89 100.00 100.00 100.00 100.00 96.43 98.78 97.37 100.00 98.15 100.00 100.00 100.00 100.00 100.00 92.31 100.00 95.45 100.00 66.67 100.00 97.06 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 96.97 100.00 98.25 100.00 96.88 100.00 100.00 100.00 100.00 96.20 100.00 100.00 95.00 NA 100.00 100.00 100.00 100.00 95.00 K jcn_only_AD Atet,chr2L_4334987_4335394.0,chr2L_4335788_4336447.0 chr2L + chr2L_4334440_4336449;chr2L_4334105_4336449;chr2L_4334031_4336449 chr2L_4334111_4336449 chr2L_4336450_4336957;chr2L_4333936_4334030 3.79 NA NA 4.17 NA NA 10.00 0.00 0.00 NA NA 3.45 5.00 NA NA 8.70 NA NA 8.70 0.00 NA 3.39 4.55 NA NA NA NA NA 7.69 3.45 NA NA 0.00 6.67 4.17 0.00 NA NA NA 4.17 3.57 9.52 NA 0.00 NA 0.00 NA 4.00 4.00 NA 0.00 NA NA NA NA NA NA 0.00 K intron_retention CG3909,mtTFB2 chr3R + chr3R_5869972_5870025 chr3R_5869971_5869972;chr3R_5870025_5870026 chr3R_5869784_5869971;chr3R_5870026_5870329 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 3.57 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor unk,I_chr3R_18980963_18981530 chr3R - chr3R_18980690_18980853 chr3R_18980693_18980853 chr3R_18980854_18980896;chr3R_18980567_18980689 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Hr39,I_chr2L_21256047_21256260 chr2L + chr2L_21256047_21256945 chr2L_21256046_21256047;chr2L_21256945_21256946 chr2L_21255947_21256046;chr2L_21256946_21257048 0.00 3.45 0.00 16.36 0.00 0.00 0.00 8.89 3.57 11.76 10.53 9.09 25.00 NA 7.41 3.03 0.00 5.56 4.55 5.26 0.00 0.00 5.26 0.00 7.14 13.04 0.00 0.00 0.00 0.00 3.33 NA 0.00 1.92 0.00 16.00 0.00 0.00 0.00 0.00 NA 5.88 12.00 0.00 NA 0.00 0.00 0.00 7.55 0.00 0.00 0.00 0.00 NA 9.09 0.00 6.67 0.00 K intron_retention mRNA-capping-enzyme chrX - chrX_14134818_14134884 chrX_14134817_14134818;chrX_14134884_14134885 chrX_14134621_14134817;chrX_14134885_14135158 0.00 1.87 0.00 1.03 0.00 3.12 2.15 0.00 1.50 0.00 0.00 2.75 0.00 1.69 3.49 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 2.56 0.00 1.25 6.15 6.52 8.20 0.00 0.00 0.00 1.05 0.00 1.10 0.00 1.09 0.00 0.00 0.00 0.95 1.26 0.00 0.00 3.45 1.83 3.54 0.00 1.85 0.83 0.00 0.00 0.00 0.00 1.18 0.00 0.59 3.01 K intron_retention noncoding_18164,F_chr3R_17192061_17200781 chr3R + chr3R_17192061_17192171 chr3R_17192060_17192061;chr3R_17192171_17192172 chr3R_17191961_17192060;chr3R_17192172_17192272 20.52 6.25 NA 19.35 NA NA 20.00 35.00 21.05 18.75 NA 31.58 NA 30.77 36.36 33.33 38.46 25.00 25.00 24.14 36.36 14.29 11.54 20.00 NA 20.00 25.93 41.67 22.22 15.79 3.85 NA 5.88 14.29 NA NA 16.28 8.33 30.00 27.59 NA 21.05 NA 16.67 16.67 40.00 4.76 20.00 23.08 8.33 8.70 NA NA NA 15.79 22.22 23.53 NA K intron_retention CG3003,CG3099 chrX + chrX_9514565_9514625 chrX_9514564_9514565;chrX_9514625_9514626 chrX_9514376_9514564;chrX_9514626_9515700 0.00 0.00 0.00 2.60 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG4272 chr2L + chr2L_2365729_2366274;chr2L_2365902_2366274 chr2L_2365391_2366274 chr2L_2366275_2368213;chr2L_2365332_2365390 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 2.78 4.35 0.00 0.00 0.00 0.00 5.56 4.35 0.00 6.67 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 5.26 0.00 6.67 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 3.03 7.14 3.85 0.00 0.00 0.00 4.35 7.14 0.00 5.26 K intron_retention DNApol-iota chr3R + chr3R_4059369_4059972 chr3R_4059368_4059369;chr3R_4059972_4059973 chr3R_4059361_4059368;chr3R_4059973_4060944 7.69 NA NA 0.00 NA NA NA 12.50 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA N alternative_donor Moe,I_chrX_8774434_8775874,I_chrX_8774434_8791759 chrX - chrX_8774434_8785766 chrX_8774434_8785594 chrX_8774334_8774433;chrX_8785767_8785791 100.00 99.15 100.00 100.00 100.00 100.00 100.00 100.00 99.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N intron_retention CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806725_22807254 chr3R_22806724_22806725;chr3R_22807254_22807255 chr3R_22806674_22806724;chr3R_22807255_22807473 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 89.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K mutually_exclusive CG33523,RI_chr3L_5920177_5921323 chr3L + chr3L_5918725_5921323,chr3L_5921397_5921636 chr3L_5918725_5919836,chr3L_5920167_5921636 chr3L_5921324_5921396 chr3L_5919837_5920166 chr3L_5918696_5918724;chr3L_5921637_5921740 100.00 NA NA 60.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention CG40451 chr3RHet - chr3RHet_1814046_1823434 chr3RHet_1814045_1814046;chr3RHet_1823434_1823435 chr3RHet_1813560_1814045;chr3RHet_1823435_1823612 0.00 0.00 0.00 1.42 0.00 0.00 1.08 0.90 0.44 0.00 0.00 0.00 0.00 0.00 0.79 0.65 0.00 0.93 0.00 0.78 0.00 0.00 0.00 0.57 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.88 0.00 1.47 1.03 0.00 0.00 0.00 0.00 2.34 0.00 0.78 0.00 0.00 1.35 0.87 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.66 1.26 1.07 K jcn_only_AD Keap1 chr3R - chr3R_12902616_12905144;chr3R_12902616_12905148 chr3R_12902616_12905594 chr3R_12902299_12902615;chr3R_12905595_12905636 87.50 NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_927771_929704,CG32021,RI_chr4_928180_928245,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_928193_928245 chr4_928192_928193;chr4_928245_928246 chr4_928093_928192;chr4_928246_928314 90.57 95.65 96.15 95.24 90.48 96.15 78.57 93.33 91.04 91.67 88.00 90.00 96.67 87.10 97.62 97.14 96.00 90.48 95.83 89.83 95.65 95.17 81.82 85.00 89.29 96.43 93.83 97.37 92.59 89.47 81.82 84.00 88.57 89.80 92.86 89.74 86.49 82.86 82.50 80.39 86.67 95.92 88.00 90.57 93.75 96.67 80.95 92.45 92.86 96.77 90.00 88.46 94.44 92.86 97.06 86.96 88.00 85.71 K alternative_acceptor loqs chr2L + chr2L_13384023_13384656 chr2L_13384023_13384526 chr2L_13383737_13384022;chr2L_13384657_13384662 50.00 NA NA NA NA NA NA 50.00 80.00 NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA 57.14 NA NA NA NA NA NA NA 36.36 NA NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD dia chr2L + chr2L_20758386_20760524 chr2L_20758664_20760524 chr2L_20760525_20760841;chr2L_20758126_20758385 71.10 72.41 88.00 86.67 59.26 88.00 67.74 71.15 77.03 27.27 75.86 63.83 78.79 70.37 64.71 69.70 76.92 70.97 80.00 75.38 70.00 86.67 46.34 NA NA 87.50 NA 73.08 42.31 68.18 89.29 NA 62.50 82.22 NA NA 56.76 62.07 79.17 64.44 NA 73.58 50.00 63.64 NA NA NA 72.00 66.07 50.00 71.43 NA NA NA 71.05 NA NA 77.27 K alternative_acceptor Exp6,I_chrX_368653_368730,I_chrX_368673_368730,I_chrX_369347_369797 chrX - chrX_368540_368730 chrX_368673_368730 chrX_368731_368830;chrX_368343_368539 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 K intron_retention cul-2,I_chr2L_21658962_21659119,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21658962_21659094 chr2L_21658961_21658962;chr2L_21659094_21659095 chr2L_21658862_21658961;chr2L_21659095_21659272 91.53 92.68 86.54 90.91 87.88 83.33 89.94 91.53 88.00 86.11 87.88 87.23 96.30 94.29 85.94 92.86 83.33 87.50 93.18 94.59 97.06 94.66 94.74 90.38 97.06 87.88 95.04 95.61 90.67 98.63 93.24 90.62 90.79 88.52 92.45 94.52 92.00 92.86 92.86 90.91 94.20 84.21 87.10 91.67 93.33 91.84 95.65 87.50 84.00 95.12 93.75 87.18 88.89 96.55 88.68 86.67 95.00 85.71 K intron_retention Slip1,RI_chr4_684967_689045,I_chr4_685717_686576,RI_chr4_685717_689045,RI_chr4_687548_689045 chr4 + chr4_689201_689755 chr4_689200_689201;chr4_689755_689756 chr4_689046_689200;chr4_689756_690313 7.69 3.57 6.25 42.86 0.00 4.55 7.14 8.96 3.95 NA 5.56 12.20 12.12 8.82 6.45 10.14 7.89 15.00 4.65 6.06 7.41 0.00 5.13 7.69 NA 0.00 14.29 15.38 NA 8.33 6.06 0.00 11.11 8.82 0.00 30.00 0.00 7.69 0.00 10.34 NA 9.26 12.50 6.67 NA 7.69 8.33 14.29 8.22 0.00 14.29 0.00 NA 0.00 5.88 13.04 10.91 4.35 K alternative_donor rho-7,noncoding_6143 chr2R - chr2R_7876069_7876127 chr2R_7876069_7876123 chr2R_7876008_7876068;chr2R_7876128_7876254 2.56 3.03 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 4.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 21.43 3.39 2.38 19.05 0.00 13.04 4.44 12.50 3.23 15.69 0.00 3.03 0.00 9.38 9.09 0.00 2.63 2.50 4.55 7.69 4.17 NA 2.70 2.38 2.13 1.41 8.33 0.00 10.00 3.23 4.76 1.96 2.63 4.00 7.41 3.92 2.27 N cassette Aps,I_chr3L_10889978_10890059,I_chr3L_10889978_10890180,I_chr3L_10889978_10890782,I_chr3L_10889978_10890997,I_chr3L_10889978_10891195 chr3L - chr3L_10889725_10891077 chr3L_10889725_10889878;chr3L_10889978_10891077 chr3L_10889879_10889977 chr3L_10889569_10889724;chr3L_10891078_10891097 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG10990,noncoding_23570 chrX - chrX_13646056_13648862 chrX_13646061_13648862 chrX_13648863_13649094;chrX_13644619_13646055 99.24 98.00 97.30 99.22 100.00 98.08 98.85 98.04 99.31 98.39 96.61 94.90 98.73 98.44 98.61 99.24 100.00 98.46 98.85 99.43 100.00 98.96 97.92 100.00 100.00 100.00 100.00 100.00 98.98 98.96 98.94 98.65 99.43 99.28 96.00 100.00 100.00 100.00 96.97 100.00 100.00 96.69 98.44 98.65 100.00 100.00 100.00 99.37 97.92 100.00 100.00 100.00 100.00 100.00 98.92 100.00 95.83 100.00 K jcn_only_AA CG10960,I_chr3L_12819402_12819475,I_chr3L_12820683_12835879 chr3L - chr3L_12819402_12819475 chr3L_12819406_12819475 chr3L_12819476_12819536;chr3L_12819337_12819401 100.00 100.00 99.74 99.68 100.00 100.00 99.35 99.74 99.78 99.32 100.00 100.00 99.58 100.00 99.76 99.74 100.00 99.73 100.00 100.00 99.69 100.00 100.00 98.91 100.00 100.00 100.00 100.00 100.00 100.00 99.50 100.00 100.00 100.00 100.00 100.00 99.63 100.00 100.00 99.65 100.00 99.73 100.00 100.00 100.00 99.67 100.00 100.00 100.00 100.00 99.44 99.44 100.00 99.44 99.78 100.00 100.00 100.00 K jcn_only_AD CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4984610_4984712 chr2L_4984636_4984712 chr2L_4984713_4984812;chr2L_4984536_4984609 4.26 1.39 1.33 5.36 0.00 4.55 7.87 4.27 2.92 12.50 9.26 1.53 6.12 6.45 4.94 4.26 4.17 3.77 5.88 1.48 4.17 16.18 4.00 0.00 9.84 14.93 6.32 5.26 16.25 5.13 10.00 11.11 5.41 2.75 3.64 1.27 3.68 2.63 3.54 2.44 2.27 3.62 2.94 3.53 5.00 7.84 4.17 12.16 4.35 8.82 4.05 2.04 2.86 6.45 4.21 5.88 0.00 12.50 K jcn_only_AA CG12753,Pak3 chr3R - chr3R_12264366_12264433 chr3R_12264373_12264433 chr3R_12264434_12264895;chr3R_12263787_12264365 100.00 98.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.28 100.00 100.00 100.00 100.00 100.00 100.00 99.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 98.10 100.00 100.00 100.00 100.00 100.00 97.98 98.59 100.00 100.00 100.00 100.00 100.00 100.00 98.10 98.67 100.00 98.67 100.00 100.00 98.08 100.00 100.00 100.00 100.00 K jcn_only_AD CG1599,I_chr2R_5729274_5729347,I_chr2R_5729744_5729805 chr2R - chr2R_5729274_5729351 chr2R_5729274_5729347 chr2R_5729174_5729273;chr2R_5729352_5729447 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.52 0.00 0.70 0.00 0.00 0.00 0.45 0.51 0.00 1.12 0.62 0.25 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.85 0.00 0.58 0.00 0.00 0.66 0.40 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.51 0.52 0.00 0.95 0.64 0.00 0.00 0.00 0.58 K intron_retention Moe,I_chrX_8774434_8791759 chrX - chrX_8785657_8785727 chrX_8785656_8785657;chrX_8785727_8785728 chrX_8785595_8785656;chrX_8785728_8785766 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.85 100.00 100.00 100.00 99.85 100.00 100.00 100.00 99.34 100.00 100.00 99.80 100.00 100.00 100.00 99.70 99.83 100.00 100.00 99.84 100.00 100.00 100.00 99.78 100.00 100.00 100.00 99.75 100.00 100.00 100.00 100.00 99.84 100.00 100.00 100.00 100.00 100.00 99.81 100.00 100.00 100.00 100.00 100.00 99.81 K jcn_only_AA CG7408 chr3L + chr3L_17872349_17873076;chr3L_17872349_17873049 chr3L_17872349_17872977 chr3L_17872262_17872348;chr3L_17873077_17873164 51.72 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 51.72 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention crol,I_chr2L_11799403_11802904 chr2L - chr2L_11799406_11800154 chr2L_11799405_11799406;chr2L_11800154_11800155 chr2L_11799235_11799405;chr2L_11800155_11800322 7.55 6.02 9.23 8.70 5.80 7.02 14.00 7.14 9.83 4.35 12.70 17.58 23.44 9.23 7.37 5.41 5.26 6.76 10.67 7.58 11.84 7.55 3.40 4.63 8.11 8.64 8.26 15.79 13.64 7.89 11.43 16.67 2.13 9.09 6.41 7.69 6.71 4.55 5.84 9.48 16.67 7.43 10.77 8.00 5.56 10.87 4.84 14.04 6.98 6.02 6.40 5.71 5.26 4.88 10.11 1.96 3.45 0.00 K alternative_donor RI_chr3L_17480321_17481164,Oatp74D,chr3L_17480319_17480976.0,I_chr3L_17480594_17481164,I_chr3L_17500359_17500724 chr3L + chr3L_17480321_17481164;chr3L_17480594_17481164;chr3L_17480301_17481164 chr3L_17480290_17481164 chr3L_17481165_17481264;chr3L_17480274_17480289 28.57 NA NA 33.33 NA NA 53.85 20.00 52.17 NA NA 41.67 NA NA NA 40.00 NA 40.00 NA 30.00 NA 18.18 57.14 NA 20.00 NA 40.00 16.67 20.00 NA NA NA 10.00 33.33 NA NA 22.22 NA 25.00 22.22 NA 28.57 NA 50.00 NA 0.00 NA 9.09 38.46 NA NA NA NA NA 33.33 25.00 NA 20.00 K jcn_only_AA noncoding_22888,I_chrX_10152994_10153223 chrX - chrX_10152994_10153223 chrX_10152998_10153223 chrX_10153224_10153323;chrX_10152911_10152993 88.48 NA NA NA NA NA 86.96 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG16833,I_chr2L_10994022_10994325,I_chr2L_10994919_10997334 chr2L + chr2L_10993674_10993742 chr2L_10993673_10993674;chr2L_10993742_10993743 chr2L_10993503_10993673;chr2L_10993743_10994021 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8389,Rrp42,RI_chr2R_11902769_11902844 chr2R + chr2R_11899344_11899459 chr2R_11899343_11899344;chr2R_11899459_11899460 chr2R_11899266_11899343;chr2R_11899460_11899575 0.00 NA NA 4.76 NA NA NA NA 6.67 NA NA 9.09 NA 5.88 7.69 NA NA NA NA 0.00 NA 21.43 7.41 0.00 0.00 0.00 NA NA 20.00 NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 15.00 NA NA NA 4.76 NA NA 9.52 NA 0.00 NA NA 0.00 0.00 NA NA NA K alternative_donor CG7702 chr3R + chr3R_14495273_14496859;chr3R_14495421_14496859 chr3R_14495285_14496859 chr3R_14496860_14497096;chr3R_14495114_14495272 22.22 NA 40.00 NA NA NA 20.00 NA NA NA NA 25.00 NA NA NA NA NA NA NA 18.18 NA NA 11.11 28.57 20.00 NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA 33.33 25.00 NA 14.29 NA 28.57 NA 44.44 22.22 NA 11.11 NA NA NA NA NA NA NA K intron_retention kal-1 chr3R + chr3R_19972590_19972917 chr3R_19972589_19972590;chr3R_19972917_19972918 chr3R_19972523_19972589;chr3R_19972918_19973212 3.92 2.78 6.82 10.64 4.84 4.17 5.56 2.70 1.69 12.00 0.00 2.90 0.00 4.08 5.56 5.00 9.09 10.64 3.61 6.67 6.67 21.95 2.35 2.11 6.67 2.86 12.77 15.15 4.26 2.38 3.77 4.26 1.56 2.60 5.88 15.56 1.56 3.39 5.00 5.21 4.00 1.87 0.00 3.92 4.40 0.00 0.00 2.90 0.00 4.22 4.84 0.00 2.35 7.55 1.64 2.70 2.86 2.67 K jcn_only_AA gro chr3R + chr3R_21870349_21871196;chr3R_21870349_21870725 chr3R_21870349_21871190 chr3R_21870166_21870348 88.57 81.43 90.64 90.49 89.92 91.73 89.93 92.14 91.24 90.82 86.93 89.75 89.71 84.47 88.57 91.87 92.04 92.22 87.01 88.09 90.91 87.10 87.40 89.67 85.93 93.62 86.87 80.68 88.61 90.95 85.84 85.62 87.77 89.39 85.80 89.17 90.97 88.02 88.02 86.10 85.09 88.30 87.61 88.28 85.85 88.82 94.05 85.78 91.00 89.77 85.60 94.06 88.73 87.84 90.29 87.92 86.89 85.54 K alternative_acceptor Acf1,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27620212_27620703 chr3R_27620212_27620267 chr3R_27620112_27620211;chr3R_27620704_27621934 0.00 0.00 2.00 8.16 0.00 1.72 0.00 1.37 0.95 0.00 4.00 1.90 0.00 1.82 1.69 0.00 3.23 2.17 1.69 0.85 0.00 0.00 0.00 0.00 0.00 2.27 1.92 4.76 0.00 0.00 0.00 0.00 2.00 1.16 0.00 0.00 0.00 0.00 1.37 0.91 0.00 1.05 0.00 0.00 3.57 0.00 0.00 0.00 0.94 0.00 0.00 3.70 0.00 4.76 0.00 0.00 5.88 2.94 K intron_retention CG10741,CG17689 chr3L + chr3L_13490626_13493999 chr3L_13490625_13490626;chr3L_13493999_13494000 chr3L_13490557_13490625;chr3L_13494000_13494314 93.33 NA NA 85.71 NA 90.00 90.00 95.24 93.33 NA NA 94.74 NA 100.00 90.00 100.00 NA 81.82 100.00 94.12 NA 88.24 94.74 92.31 NA NA 87.50 96.88 90.32 93.33 NA NA 89.47 90.91 100.00 NA 90.00 NA 81.25 91.67 87.50 94.12 100.00 NA 75.00 100.00 91.67 96.77 100.00 NA 95.00 100.00 90.00 90.00 100.00 90.91 100.00 100.00 K jcn_only_AD CG2126,RI_chr3R_27602105_27602266,REI_chr3R_27602105_27602291,RI_chr3R_27602105_27602308 chr3R - chr3R_27602105_27602266 chr3R_27602105_27602166 chr3R_27602005_27602104;chr3R_27602267_27602326 95.00 NA NA 86.67 NA 88.00 73.08 NA 93.33 NA NA 100.00 NA 92.00 88.46 95.65 NA NA NA 95.45 80.95 NA 100.00 100.00 100.00 91.30 NA NA 100.00 NA 87.50 NA 95.00 83.78 NA NA NA NA 100.00 100.00 NA 82.50 NA 100.00 100.00 100.00 100.00 NA 92.31 NA 96.43 NA NA 100.00 92.59 91.30 NA 91.30 K intron_retention dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21309084_21309579 chr2L_21309083_21309084;chr2L_21309579_21309580 chr2L_21308992_21309083;chr2L_21309580_21309679 100.00 91.67 100.00 100.00 100.00 100.00 94.74 100.00 100.00 90.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 95.24 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 96.15 NA 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 K alternative_last_exon CG6043,I_chr2L_13267973_13268086 chr2L + chr2L_13274377_13276246 chr2L_13274377_13274690,chr2L_13274377_13274651,chr2L_13274377_13274642 chr2L_13276247_13276512 chr2L_13274691_13274850 chr2L_13274310_13274376 88.89 83.33 NA NA NA NA 75.00 NA 90.00 71.43 NA NA NA NA 75.00 NA NA NA NA 88.89 NA 93.33 88.89 80.00 NA NA NA NA 90.00 75.00 75.00 83.33 92.31 77.78 NA NA 80.00 85.71 90.00 91.67 NA 90.91 NA 100.00 NA 88.89 90.00 88.89 100.00 93.75 90.00 NA 100.00 NA 100.00 100.00 87.50 87.50 K alternative_acceptor CG33087,EI_chr2R_4062337_4074409 chr2R + chr2R_4102730_4102804 chr2R_4102730_4102789 chr2R_4101973_4102729;chr2R_4102805_4103085 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 96.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 87.50 NA NA 100.00 NA NA NA K jcn_only_AA betaInt-nu chr2L + chr2L_21053362_21053457 chr2L_21053362_21053426 chr2L_21053285_21053361;chr2L_21053458_21053644 2.37 0.00 7.89 3.33 2.33 9.09 5.56 5.00 4.35 3.57 4.55 0.00 3.70 0.00 0.00 1.20 2.27 2.44 0.00 2.41 0.00 NA 0.00 2.94 2.94 11.11 4.76 NA NA 0.00 5.13 0.00 0.00 0.00 NA 5.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.70 4.55 8.64 NA 0.00 3.57 3.45 NA 6.25 0.00 2.27 5.13 K jcn_only_AD Nipped-B,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_616057_617208;chr2R_616057_616283;chr2R_616057_616318 chr2R_616057_616311 chr2R_615957_616056;chr2R_617209_617308 45.45 48.39 53.70 46.59 46.15 34.21 41.67 37.86 45.24 NA 46.43 49.12 43.86 34.38 59.46 35.78 51.72 35.48 40.35 43.33 50.00 57.69 42.86 63.41 45.45 47.50 46.75 37.84 44.44 48.28 50.88 NA 44.00 44.34 53.49 28.85 52.27 45.16 41.18 41.67 NA 48.42 60.61 38.98 NA NA NA 51.43 51.11 NA 39.13 41.03 NA NA 48.39 NA NA NA K jcn_only_AA PyK,CG7069,CG18596,I_chr3R_18203637_18203690,I_chr3R_18209085_18209133 chr3R + chr3R_18193391_18196509;chr3R_18193391_18194501;chr3R_18193391_18196485 chr3R_18193391_18194506 chr3R_18193322_18193390 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG18749,noncoding_15296,CG33722 chr3R + chr3R_4069864_4069923 chr3R_4069864_4069918 chr3R_4069831_4069863;chr3R_4069924_4070163 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 94.12 95.00 100.00 NA 95.45 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 95.65 NA 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 NA K intron_retention I_chr3L_15996923_15996998,mib1 chr3L - chr3L_15999974_16000032 chr3L_15999973_15999974;chr3L_16000032_16000033 chr3L_15999652_15999973;chr3L_16000033_16001970 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8468 chr2R + chr2R_10107548_10108112 chr2R_10107547_10107548;chr2R_10108112_10108113 chr2R_10107405_10107547;chr2R_10108113_10108270 21.57 19.08 23.03 26.96 25.77 20.29 33.33 19.06 27.96 21.57 32.56 25.25 30.71 24.07 24.49 28.63 23.94 23.29 30.26 27.68 25.95 20.83 18.27 19.70 26.09 29.63 23.21 19.10 20.34 10.91 25.39 20.25 12.61 24.44 18.37 35.20 25.89 16.38 18.02 18.87 26.95 20.83 27.34 21.36 14.79 13.70 19.18 17.39 23.36 19.74 15.79 27.03 15.83 18.82 26.18 16.79 18.09 14.47 K jcn_only_AA Pka-R1,CG3288 chr3L + chr3L_20826758_20826832 chr3L_20826758_20826829 chr3L_20826383_20826757;chr3L_20826833_20826969 74.00 71.93 74.00 53.33 82.50 86.67 77.78 82.00 69.12 68.18 77.78 79.10 60.00 72.73 65.79 70.83 76.92 74.36 58.62 81.82 67.74 82.95 77.61 70.45 75.00 71.88 68.97 80.85 75.71 75.00 80.65 67.50 76.83 69.23 72.50 64.15 74.39 85.48 73.33 70.24 72.55 74.70 58.82 76.19 77.97 73.68 75.81 77.08 68.42 74.47 77.55 53.85 77.08 66.67 72.73 72.34 73.33 88.61 K intron_retention cul-5 chr3R - chr3R_24886862_24886923 chr3R_24886861_24886862;chr3R_24886923_24886924 chr3R_24886741_24886861;chr3R_24886924_24888527 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.42 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585739_2586402;chr3L_2585716_2586402 chr3L_2585733_2586402 chr3L_2586403_2586502;chr3L_2585639_2585715 3.23 4.08 5.09 1.48 5.98 6.15 2.52 3.45 2.03 0.00 3.75 1.87 2.40 1.79 1.35 2.82 3.68 3.59 1.97 3.28 4.23 4.52 4.02 3.28 0.00 1.95 2.75 4.35 3.80 2.84 2.20 6.49 5.67 2.91 1.86 4.19 5.08 2.96 2.63 3.16 3.03 2.70 5.62 1.15 4.50 1.81 6.06 4.27 3.23 3.92 3.79 1.64 6.76 5.88 2.49 2.75 2.08 3.33 K intron_retention CG6422,RI_chr3R_20863994_20864142 chr3R - chr3R_20864239_20864374 chr3R_20864238_20864239;chr3R_20864374_20864375 chr3R_20864143_20864238;chr3R_20864375_20864395 43.02 47.83 45.45 22.45 40.00 54.55 51.11 43.18 48.39 7.14 46.67 43.59 30.77 44.00 48.48 33.33 64.00 47.06 37.04 27.27 50.00 18.92 63.64 57.89 69.23 80.00 65.00 42.86 28.57 10.26 40.74 2.86 8.47 42.31 47.62 42.11 66.67 75.00 52.63 22.64 18.92 41.18 45.45 38.89 11.11 10.71 45.45 8.99 43.18 42.86 68.42 60.00 NA NA 40.62 NA 29.41 8.85 K intron_retention sbr,RI_chrX_10731248_10731484 chrX - chrX_10728434_10728500 chrX_10728433_10728434;chrX_10728500_10728501 chrX_10728262_10728433;chrX_10728501_10728730 3.45 2.63 0.00 9.26 10.00 5.41 11.67 8.00 2.78 0.00 6.25 7.46 5.00 3.12 7.69 8.70 0.00 3.45 7.14 6.45 0.00 8.47 3.49 2.70 0.00 4.76 5.80 9.52 13.46 4.76 1.49 0.00 4.76 9.43 0.00 0.00 1.32 2.13 0.00 1.49 0.00 5.26 0.00 0.00 10.34 7.14 3.33 0.00 5.80 4.00 1.39 0.00 0.00 0.00 2.56 3.92 0.00 22.22 K intron_retention Dap160,I_chr2L_21139943_21140007 chr2L - chr2L_21140157_21140216 chr2L_21140156_21140157;chr2L_21140216_21140217 chr2L_21140009_21140156;chr2L_21140217_21140490 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 4.17 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 N multi_cassette CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525393_1529105 chr3L_1525393_1526659;chr3L_1526732_1527189;chr3L_1527382_1527438;chr3L_1527614_1527673;chr3L_1528077_1529105 chr3L_1526660_1526731;chr3L_1527190_1527381;chr3L_1527439_1527613;chr3L_1527674_1528076 chr3L_1525293_1525392;chr3L_1529106_1529206 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 38.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG16812,E_chr2L_13223243_13223344 chr2L + chr2L_13222748_13222871 chr2L_13222798_13222871 chr2L_13222872_13223288;chr2L_13222734_13222747 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.85 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Asator chr4 - chr4_495395_497917 chr4_495395_495585;chr4_495731_497917 chr4_495586_495730 chr4_495385_495394;chr4_497918_497940 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA K alternative_donor Sin3A,RI_chr2R_8473578_8475687,RI_chr2R_8473578_8476220,I_chr2R_8473578_8480185,RI_chr2R_8479951_8480233 chr2R - chr2R_8473578_8480233 chr2R_8473578_8479833 chr2R_8473478_8473577;chr2R_8480234_8480285 91.67 86.67 88.89 93.33 100.00 80.95 93.55 86.49 84.21 76.92 100.00 94.29 83.33 94.12 93.33 90.00 100.00 88.24 83.33 90.91 93.33 91.67 95.24 76.47 100.00 93.75 73.68 100.00 90.91 93.75 79.17 100.00 100.00 89.58 93.33 90.91 93.33 83.33 72.73 96.30 75.00 88.24 95.00 93.33 75.00 90.91 80.00 96.00 86.84 100.00 90.00 100.00 100.00 66.67 94.74 87.50 100.00 92.86 K intron_retention CG6091,E_chr3L_11600447_11600553 chr3L - chr3L_11599572_11599635 chr3L_11599571_11599572;chr3L_11599635_11599636 chr3L_11599357_11599571;chr3L_11599636_11600183 27.03 28.00 24.32 51.43 19.23 36.00 36.36 14.58 32.14 23.08 35.71 22.81 26.09 27.59 29.73 22.86 25.00 21.43 29.63 20.69 16.67 44.19 31.03 27.78 35.29 48.39 41.46 25.00 33.33 23.33 39.02 33.33 24.44 32.50 24.24 36.00 32.00 32.00 25.00 29.17 29.41 24.19 24.00 13.64 14.63 26.67 17.65 28.12 25.00 40.00 27.03 29.17 6.67 27.59 22.86 23.53 12.50 11.63 K intron_retention simj,I_chr3L_10680263_10680313 chr3L + chr3L_10679362_10680337 chr3L_10679361_10679362;chr3L_10680337_10680338 chr3L_10679064_10679361;chr3L_10680338_10680413 22.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 22.22 NA NA NA NA 50.00 NA 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA RpS18,CG8908,EI_chr2R_16151918_16151997,I_chr2R_16151918_16152036,I_chr2R_16151938_16152065,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151938_16152036;chr2R_16151938_16151997;chr2R_16151938_16152006 chr2R_16151938_16152065 chr2R_16151852_16151937;chr2R_16152066_16152066 0.01 0.03 0.01 0.01 0.02 0.01 0.01 0.01 0.02 0.00 0.00 0.01 0.02 0.02 0.01 0.02 0.03 0.01 0.00 0.01 0.00 0.10 0.01 0.03 0.01 0.01 0.02 0.03 0.04 0.00 0.03 0.02 0.02 0.02 0.04 0.01 0.01 0.01 0.02 0.04 0.02 0.02 0.00 0.02 0.00 0.01 0.00 0.00 0.01 0.02 0.03 0.00 0.00 0.01 0.02 0.04 0.00 0.02 K intron_retention CG31522,I_chr3R_273677_273730,RI_chr3R_273677_273734,I_chr3R_273677_273755,I_chr3R_273677_278367,I_chr3R_273677_278654,I_chr3R_273677_278828,RI_chr3R_273677_279264 chr3R - chr3R_273677_278913 chr3R_273676_273677;chr3R_278913_278914 chr3R_273577_273676;chr3R_278914_278928 21.24 25.00 18.18 7.69 14.29 33.33 33.33 16.28 14.81 NA NA 27.27 NA 22.73 19.05 16.67 14.29 NA 25.00 9.43 29.41 33.33 17.50 30.00 NA 20.00 25.00 NA NA 15.79 20.00 NA 35.71 15.38 45.45 18.75 26.67 27.78 23.08 32.14 NA 20.00 20.00 13.04 41.67 20.00 21.43 29.17 14.63 21.43 16.00 21.05 NA NA 13.79 30.77 27.78 26.67 N jcn_only_AA Kr-h1,chr2L_6088263_6088504.0 chr2L + chr2L_6083741_6092994;chr2L_6083741_6084867 chr2L_6083741_6091609 chr2L_6083642_6083740 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 0.00 3.70 0.00 0.00 0.00 NA 1.03 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention SdhB chr2R + chr2R_2696032_2696087 chr2R_2696031_2696032;chr2R_2696087_2696088 chr2R_2695595_2696031;chr2R_2696088_2696678 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.41 1.67 0.28 0.56 0.00 1.46 0.85 1.50 1.59 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.30 0.00 0.61 0.80 1.38 0.00 0.59 0.30 0.00 0.30 0.54 0.00 0.00 0.35 0.68 0.66 0.35 0.00 0.00 0.00 0.00 0.00 K alternative_donor bowl,RI_chr2L_3772695_3773616 chr2L + chr2L_3771785_3772460;chr2L_3771874_3772460 chr2L_3771755_3772460 chr2L_3772461_3772694;chr2L_3771707_3771754 12.50 NA 0.00 11.11 NA NA 9.09 11.11 22.22 NA NA NA NA 14.29 NA 14.29 NA NA NA 18.18 NA 12.50 12.50 NA 0.00 NA NA 14.29 NA 14.29 NA NA 0.00 18.18 NA NA 16.67 NA NA 10.00 NA 12.50 NA NA NA NA NA NA 9.09 NA NA NA NA NA 8.33 NA NA 14.29 K intron_retention Pvr,I_chr2L_8226604_8228082,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8227827_8228493 chr2L_8227826_8227827;chr2L_8228493_8228494 chr2L_8227758_8227826;chr2L_8228494_8229011 15.38 11.59 11.54 84.21 20.00 11.32 11.11 24.24 14.86 6.06 76.92 12.66 15.87 24.00 20.31 20.69 19.23 26.09 13.25 4.52 33.33 16.67 11.11 13.75 14.04 8.06 25.49 25.00 15.00 24.44 17.39 15.00 12.96 15.84 23.53 20.00 14.00 8.22 13.58 14.85 12.50 17.21 20.00 15.38 12.50 8.11 12.77 16.67 20.17 16.67 14.15 18.00 13.33 17.65 15.79 22.22 13.33 10.71 K intron_retention Myo31DF,I_chr2L_10506249_10506683,I_chr2L_10506446_10506542 chr2L - chr2L_10506107_10506542 chr2L_10506106_10506107;chr2L_10506542_10506543 chr2L_10505926_10506106;chr2L_10506543_10506598 64.50 50.00 66.67 60.00 70.00 56.25 71.43 40.91 58.62 42.86 52.94 53.33 56.25 81.82 57.89 73.33 71.43 53.33 62.50 66.67 55.56 76.47 71.43 52.63 73.33 78.95 80.77 66.67 79.31 63.64 64.71 75.00 41.18 59.09 63.64 83.33 56.25 46.15 77.78 60.61 71.43 66.67 66.67 71.43 NA 53.85 NA 70.83 61.54 53.85 77.78 64.29 NA NA 65.00 NA NA NA K intron_retention flw chrX + chrX_10301334_10301398 chrX_10301333_10301334;chrX_10301398_10301399 chrX_10301199_10301333;chrX_10301399_10302137 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.68 0.00 0.00 0.00 0.00 2.82 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.78 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Moe,I_chrX_8774434_8791759 chrX - chrX_8785657_8785766 chrX_8785657_8785727 chrX_8785595_8785656;chrX_8785767_8785791 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA 5.00 NA 0.00 NA 5.36 0.00 NA NA NA NA NA NA NA NA NA 8.70 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 0.00 NA 5.00 NA NA 0.00 NA 0.00 NA K intron_retention Taf8,C_chrX_17996920_17996981 chrX + chrX_17996241_17996300 chrX_17996240_17996241;chrX_17996300_17996301 chrX_17996040_17996240;chrX_17996301_17996735 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 14.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG3689 chr3L + chr3L_9405083_9406302 chr3L_9405083_9405254 chr3L_9404917_9405082;chr3L_9406303_9406402 13.86 14.29 13.27 10.29 8.41 14.81 21.43 12.00 12.95 10.00 16.67 10.71 19.57 10.31 12.90 11.76 16.85 17.70 8.06 20.72 26.23 11.71 24.63 15.00 19.10 16.67 15.09 16.51 12.28 16.87 16.06 8.00 19.53 10.11 15.52 24.68 16.28 12.90 11.24 21.09 16.50 13.86 14.29 18.10 13.47 13.51 9.88 11.55 15.50 13.29 11.63 12.77 22.83 14.88 13.67 13.33 7.87 10.41 K alternative_acceptor Nmnat chr3R + chr3R_20772018_20772675;chr3R_20772018_20772197 chr3R_20772018_20772605 chr3R_20771916_20772017;chr3R_20772676_20772744 61.29 50.00 55.56 62.50 46.15 46.15 56.25 69.23 65.85 56.25 53.33 51.72 60.00 53.33 60.00 52.38 42.86 62.50 50.00 63.89 46.67 61.36 67.65 58.62 61.11 70.59 65.62 50.00 70.00 61.54 53.85 57.69 57.58 62.07 66.67 76.00 77.50 70.00 74.19 58.82 58.62 50.00 64.29 61.29 67.86 69.57 61.54 65.71 60.00 66.67 62.50 63.16 61.54 64.00 57.14 70.00 59.46 52.63 N alternative_acceptor JhI-26,I_chr2R_12177114_12177266 chr2R + chr2R_12178257_12178348;chr2R_12178257_12178308 chr2R_12178257_12178432 chr2R_12177457_12178256;chr2R_12178433_12178520 99.12 100.00 100.00 97.70 98.68 96.97 98.40 98.52 98.97 98.08 100.00 98.60 98.28 96.97 98.88 97.78 100.00 100.00 98.86 99.38 100.00 89.58 100.00 99.17 98.97 100.00 97.89 99.38 99.42 97.70 99.31 99.10 100.00 100.00 97.26 99.12 99.21 100.00 98.72 99.38 99.38 99.29 100.00 98.90 100.00 98.60 99.19 99.25 100.00 98.64 98.48 98.80 100.00 98.94 98.85 98.10 99.47 100.00 N cassette CG31619,I_chr2L_21725446_21728027 chr2L + chr2L_21719644_21727005;chr2L_21719644_21728027 chr2L_21719644_21725067;chr2L_21725446_21727005,chr2L_21725446_21728027 chr2L_21725068_21725445 chr2L_21719514_21719643;chr2L_21728028_21728127 100.00 100.00 100.00 94.69 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 78.57 100.00 100.00 100.00 74.47 93.38 100.00 100.00 100.00 90.82 100.00 100.00 90.00 100.00 89.33 88.80 100.00 100.00 100.00 92.57 100.00 100.00 94.83 100.00 95.14 100.00 100.00 89.66 100.00 100.00 90.00 100.00 100.00 95.07 100.00 100.00 100.00 100.00 100.00 100.00 92.67 K intron_retention Cchl,I_chr3R_17852113_17852282 chr3R - chr3R_17852113_17852169 chr3R_17852112_17852113;chr3R_17852169_17852170 chr3R_17852013_17852112;chr3R_17852170_17852761 0.00 1.05 0.00 0.00 0.00 0.00 1.67 0.00 0.80 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.72 0.00 0.00 0.81 0.00 1.37 0.00 1.94 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.83 1.96 0.00 K intron_retention lkb1 chr3R + chr3R_9504789_9504872 chr3R_9504788_9504789;chr3R_9504872_9504873 chr3R_9504472_9504788;chr3R_9504873_9505152 96.67 95.00 94.44 96.77 92.31 100.00 96.15 96.77 95.56 88.89 90.00 100.00 95.24 93.33 95.45 93.75 100.00 78.95 90.48 96.88 100.00 95.00 100.00 100.00 100.00 100.00 95.45 94.44 94.74 100.00 95.24 94.12 100.00 95.45 94.74 100.00 94.44 100.00 100.00 96.67 100.00 96.88 100.00 100.00 95.65 100.00 90.48 94.44 97.37 100.00 95.83 100.00 100.00 96.15 100.00 96.00 96.88 100.00 K intron_retention eIF-4a,I_chr2L_5985221_5985289 chr2L + chr2L_5985221_5985289 chr2L_5985220_5985221;chr2L_5985289_5985290 chr2L_5985121_5985220;chr2L_5985290_5985316 99.26 99.69 99.47 99.09 99.59 100.00 99.16 99.43 98.92 99.06 99.00 99.34 99.71 99.15 99.50 99.10 98.96 99.08 99.34 98.92 99.44 99.11 99.20 99.63 98.59 98.53 98.85 99.58 100.00 99.39 100.00 100.00 98.48 99.33 99.48 99.43 98.58 99.38 99.03 99.67 98.40 98.75 98.88 99.74 98.38 99.74 99.23 99.66 99.44 99.26 98.76 98.69 98.57 99.55 99.10 99.13 99.58 99.65 K alternative_last_exon Not1,I_chr2R_5463624_5463682 chr2R - chr2R_5455592_5456067 chr2R_5455881_5456067 chr2R_5455002_5455591 chr2R_5455668_5455880 chr2R_5456068_5456427 7.52 5.51 8.06 12.86 10.78 9.62 9.90 8.20 7.52 10.00 12.79 10.10 21.40 8.64 7.79 6.22 8.96 15.74 11.11 10.38 7.87 15.87 4.98 6.13 4.07 7.58 10.93 7.59 5.68 5.39 10.50 5.38 4.30 7.51 6.72 5.54 5.12 5.05 4.35 5.11 5.07 5.98 8.87 7.14 9.56 6.23 7.02 5.41 7.17 8.82 9.52 8.43 4.09 7.35 9.52 7.48 5.08 3.31 K alternative_donor sbb,I_chr2R_14193641_14243004,noncoding_7736,RI_chr2R_14243561_14244282,I_chr2R_14243561_14244715 chr2R - chr2R_14243561_14244715;chr2R_14243561_14244596 chr2R_14243561_14244642 chr2R_14243461_14243560;chr2R_14244716_14244766 63.97 NA 50.00 64.29 NA NA 54.55 66.67 62.07 NA NA 58.82 76.92 70.00 NA 63.64 33.33 71.43 70.00 60.00 NA 66.67 64.29 NA NA 66.67 NA NA NA NA 80.00 NA NA 58.82 NA NA NA NA NA NA NA 50.00 75.00 NA NA NA NA NA 52.94 NA NA 57.14 NA NA 60.00 NA 80.00 NA K intron_retention ttv,I_chr2R_10450891_10470424 chr2R + chr2R_10470529_10470600 chr2R_10470528_10470529;chr2R_10470600_10470601 chr2R_10470425_10470528;chr2R_10470601_10470751 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 3.92 2.06 0.00 0.00 0.00 0.00 5.13 0.00 0.00 0.93 0.00 4.44 0.00 1.35 1.82 11.54 0.00 6.00 16.67 0.00 0.00 0.00 0.00 0.00 5.26 4.08 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention borr chr2L - chr2L_9252339_9252634 chr2L_9252338_9252339;chr2L_9252634_9252635 chr2L_9251942_9252338;chr2L_9252635_9253116 32.29 31.25 NA NA NA NA NA NA 54.55 NA NA NA NA NA NA NA NA NA NA 50.00 NA NA 28.57 27.78 41.67 NA NA NA NA NA NA NA NA NA NA NA 35.29 28.57 33.33 29.41 NA 33.33 NA NA 15.38 41.67 27.27 NA NA 63.64 33.33 NA 30.77 38.46 NA 25.00 28.57 NA K jcn_only_AA sra,RI_chr3R_12013022_12018544 chr3R + chr3R_12013022_12021756 chr3R_12013022_12021752 chr3R_12012922_12013021;chr3R_12021757_12023310 98.91 97.64 98.36 97.55 99.09 100.00 98.64 97.58 98.79 100.00 99.29 98.77 99.03 98.88 94.57 99.01 99.02 96.94 98.13 98.39 100.00 99.33 99.43 98.03 100.00 100.00 99.14 99.38 98.82 98.91 100.00 99.05 99.65 97.18 99.10 100.00 98.51 97.39 98.86 99.54 98.80 97.36 97.14 100.00 98.99 98.22 99.09 98.38 97.09 98.57 97.84 99.17 98.57 95.79 98.95 99.30 99.33 99.34 K alternative_donor Mtch,RI_chr3L_184729_185366,I_chr3L_185367_185925 chr3L + chr3L_184682_184777;chr3L_184670_184777 chr3L_184663_184777 chr3L_184778_184854;chr3L_184654_184662 10.00 NA 11.11 10.00 NA 28.57 0.00 8.33 9.09 NA NA 12.50 NA 20.00 NA 0.00 0.00 14.29 12.50 8.33 NA NA NA NA NA NA NA NA NA NA 16.67 NA NA 16.67 NA NA NA NA NA 11.11 NA 0.00 NA NA NA NA NA 11.11 9.09 NA NA NA NA NA 9.09 NA NA 0.00 K jcn_only_AD Rpb11,I_chr2L_17410178_17410250,I_chr2L_17410178_17410317 chr2L - chr2L_17410178_17410317 chr2L_17410178_17410251 chr2L_17410088_17410177;chr2L_17410318_17410350 100.00 99.38 99.09 100.00 100.00 100.00 100.00 100.00 99.08 98.39 100.00 98.51 100.00 100.00 100.00 99.59 98.96 100.00 99.40 100.00 100.00 100.00 100.00 98.73 96.15 98.54 99.29 99.10 100.00 100.00 100.00 99.21 100.00 99.55 100.00 99.19 99.16 98.96 100.00 98.93 98.96 100.00 97.25 100.00 99.18 99.12 100.00 99.24 100.00 100.00 100.00 98.92 100.00 100.00 100.00 99.10 99.04 99.55 N cassette l(1)G0196,I_chrX_21890195_21895316,I_chrX_21900456_21904601 chrX + chrX_21896112_21897326;chrX_21896112_21897314 chrX_21896112_21897011;chrX_21897231_21897326,chrX_21897231_21897314 chrX_21897012_21897230 chrX_21895869_21896111;chrX_21897327_21897813 4.17 3.64 1.41 3.61 3.70 3.28 25.32 3.19 3.73 5.26 5.41 8.05 59.18 4.84 4.00 1.94 4.26 7.55 8.33 7.86 1.79 16.22 4.62 7.84 14.29 20.00 5.17 2.86 8.33 1.41 6.49 2.78 0.93 3.61 5.36 6.25 4.17 5.71 6.06 5.13 5.56 3.76 1.92 4.76 2.38 2.60 3.23 0.60 5.21 10.00 4.62 2.63 0.00 3.45 4.00 2.56 3.23 1.27 N jcn_only_AD CG17841,I_chrX_10264610_10275691 chrX + chrX_10262793_10275691 chrX_10275483_10275691 chrX_10275692_10275791;chrX_10262023_10262792 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG8090,I_chr2R_11087088_11087162 chr2R - chr2R_11087809_11087894 chr2R_11087809_11087875 chr2R_11087624_11087808;chr2R_11087895_11088101 100.00 100.00 100.00 100.00 87.50 100.00 94.74 100.00 100.00 NA 90.00 95.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 91.67 100.00 94.12 93.75 NA 100.00 75.00 85.71 87.50 91.67 90.00 NA 90.00 100.00 NA NA 81.82 100.00 100.00 100.00 NA 100.00 100.00 88.89 100.00 100.00 100.00 100.00 94.44 100.00 92.86 88.89 NA 88.89 92.31 92.86 100.00 NA K intron_retention CG9339,I_chr2L_20877473_20877552,I_chr2L_20877678_20903015,I_chr2L_20882465_20889794,RE_chr2L_20903555_20916904,I_chr2L_20903560_20918638,I_chr2L_20922613_20922685 chr2L - chr2L_20877478_20877552 chr2L_20877477_20877478;chr2L_20877552_20877553 chr2L_20877411_20877477;chr2L_20877553_20877652 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD br,I_chrX_1517022_1518170 chrX + chrX_1506837_1518170 chrX_1517022_1518170 chrX_1518171_1518270;chrX_1506737_1506836 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA NA 97.67 K intron_retention sdt,I_chrX_8131684_8131842 chrX + chrX_8120117_8121903 chrX_8120116_8120117;chrX_8121903_8121904 chrX_8119818_8120116;chrX_8121904_8122131 0.00 0.00 NA NA NA NA NA NA 0.00 0.00 NA 4.35 NA NA NA NA NA NA NA 3.23 NA NA 0.00 0.00 NA NA 0.00 NA 18.75 NA NA NA 0.00 NA NA NA 2.27 6.67 8.57 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 2.17 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 K alternative_acceptor ph-d chrX - chrX_2015655_2017014 chrX_2015658_2017014 chrX_2017015_2017061;chrX_2015189_2015654 97.22 NA NA 92.86 NA NA 100.00 100.00 93.75 NA NA NA NA 100.00 NA 88.89 NA NA 100.00 78.57 NA 100.00 88.89 NA NA NA NA NA NA 90.91 NA NA 100.00 90.91 NA NA 100.00 NA 87.50 100.00 NA 91.67 NA 100.00 NA NA NA 94.44 91.67 NA 100.00 NA NA NA NA NA NA 100.00 K intron_retention CG1360,I_chr2R_3485171_3489936 chr2R - chr2R_3477040_3477099 chr2R_3477039_3477040;chr2R_3477099_3477100 chr2R_3476772_3477039;chr2R_3477100_3477208 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 6.67 0.00 NA NA NA NA 21.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA K intron_retention didum,I_chr2R_3393005_3393348 chr2R + chr2R_3390243_3390306 chr2R_3390242_3390243;chr2R_3390306_3390307 chr2R_3390149_3390242;chr2R_3390307_3390533 0.00 11.11 0.00 6.25 0.00 0.00 0.00 0.00 3.64 0.00 0.00 0.00 NA 0.00 NA 10.81 0.00 0.00 3.12 0.00 0.00 0.00 3.33 0.00 NA 4.35 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K jcn_only_AA CG31635,I_chr2L_6639349_6639396,I_chr2L_6646948_6648945 chr2L - chr2L_6640204_6640356 chr2L_6640216_6640356 chr2L_6640357_6640675;chr2L_6639397_6640203 37.98 NA NA NA NA NA NA 25.00 40.91 NA NA 15.00 NA NA NA NA NA NA NA NA NA NA 30.00 37.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.62 NA 41.67 NA NA NA 38.46 NA NA NA NA NA NA NA NA NA NA K alternative_acceptor JTBR chr3L - chr3L_1802744_1802803 chr3L_1802754_1802803 chr3L_1802804_1802835;chr3L_1802008_1802743 47.88 50.00 32.43 48.78 31.03 47.62 42.59 37.50 46.48 76.47 41.67 61.11 36.84 45.45 45.83 47.37 27.78 54.17 44.12 43.40 45.45 50.00 100.00 92.31 75.00 63.16 88.00 76.47 81.82 47.06 50.00 60.00 40.00 47.50 60.00 100.00 90.24 95.24 90.00 35.59 56.25 48.15 43.75 46.88 35.56 41.18 90.91 40.00 40.74 75.00 64.71 78.57 46.15 NA 33.33 92.31 80.95 31.82 K cassette rut,I_chrX_14718760_14718821 chrX - chrX_14684912_14687158 chrX_14684912_14685280;chrX_14686462_14687158 chrX_14685281_14686461 chrX_14684214_14684911;chrX_14687159_14687497 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG10737 chr2R + chr2R_15062592_15063692;chr2R_15062754_15063692 chr2R_15062814_15063692 chr2R_15063693_15063852;chr2R_15062387_15062591 70.36 69.42 73.83 63.18 74.10 76.70 70.56 65.72 69.51 60.78 67.82 77.75 77.27 69.64 66.83 82.86 70.12 75.77 73.84 78.81 77.55 63.56 64.80 69.36 69.18 75.14 60.71 40.15 59.24 73.42 83.56 70.16 75.64 75.37 72.78 76.17 64.71 62.04 61.67 80.25 70.78 76.88 82.19 69.41 72.77 73.53 70.36 68.73 72.73 61.31 68.85 65.19 70.59 73.98 75.45 70.18 66.85 67.68 K alternative_acceptor CG31635,I_chr2L_6639349_6639396,I_chr2L_6646948_6648945 chr2L - chr2L_6640204_6640356 chr2L_6640216_6640356 chr2L_6640357_6640675;chr2L_6639397_6640203 22.25 NA NA NA NA NA NA 15.38 30.77 NA NA 14.29 NA NA NA NA NA NA NA NA NA NA 16.67 21.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 26.32 NA 23.08 NA NA NA 29.41 NA NA NA NA NA NA NA NA NA NA K intron_retention CG8243,CG8232 chr2R + chr2R_4810621_4810772 chr2R_4810620_4810621;chr2R_4810772_4810773 chr2R_4810331_4810620;chr2R_4810773_4812991 0.00 0.00 0.00 2.17 0.00 0.00 2.70 0.00 0.00 0.00 0.00 1.09 0.00 1.69 0.87 0.00 0.00 0.00 0.00 0.00 0.00 6.25 1.50 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 K intron_retention CG40263,F_chr2RHet_1265687_1293040,F_chr2RHet_1298459_1298703,F_chr2RHet_1298459_1311408,F_chr2RHet_1298885_1299622,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1286572_1324445 chr2RHet_1286571_1286572;chr2RHet_1324445_1324446 chr2RHet_1286565_1286571;chr2RHet_1324446_1324530 45.45 NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 46.15 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG5537,I_chr3L_5804425_5804485 chr3L + chr3L_5805019_5805164 chr3L_5805080_5805164 chr3L_5805165_5805330;chr3L_5804976_5805018 91.07 95.52 89.55 87.10 100.00 91.89 80.95 91.57 89.58 NA 95.00 87.07 88.24 100.00 93.55 91.57 84.09 95.65 95.31 91.60 94.83 74.42 89.06 95.06 NA 90.62 91.07 92.16 96.30 85.29 98.80 91.38 80.95 89.77 88.00 90.91 97.22 96.77 86.67 89.16 77.78 87.10 90.70 100.00 82.56 93.10 93.06 93.88 94.50 89.38 89.01 95.35 90.67 90.22 89.29 96.55 92.98 86.44 K cassette I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17180812_17181479,RI_chr3R_17181280_17181474,I_chr3R_17181974_17182126 chr3R - chr3R_17180812_17200781;chr3R_17181280_17200781 chr3R_17180812_17181479,chr3R_17181280_17181479;chr3R_17181974_17200781 chr3R_17181480_17181973 chr3R_17180712_17180811;chr3R_17200782_17200881 60.00 72.22 47.73 59.42 45.95 60.00 64.44 55.41 51.69 50.00 59.26 54.43 54.84 65.52 52.63 53.49 56.67 48.72 59.52 52.27 68.97 81.82 66.04 58.93 78.79 57.50 73.81 73.33 78.12 53.19 70.45 48.21 62.07 62.26 74.19 76.92 60.00 50.00 66.67 43.75 62.71 56.52 50.00 60.00 60.78 54.55 56.36 58.06 53.09 65.52 70.18 60.00 64.86 66.67 64.86 62.00 60.00 57.30 K intron_retention Ravus chr3R - chr3R_9089629_9089688 chr3R_9089628_9089629;chr3R_9089688_9089689 chr3R_9088126_9089628;chr3R_9089689_9089842 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG8184,I_chrX_15620707_15620769 chrX + chrX_15617113_15617265;chrX_15617158_15617265 chrX_15617191_15617265 chrX_15617266_15618411;chrX_15615597_15617112 34.78 42.86 22.22 43.90 34.78 29.63 33.33 33.33 34.78 36.59 40.00 28.33 29.41 22.22 30.00 34.48 23.81 31.58 32.00 27.84 26.92 45.45 39.44 36.73 50.00 31.58 36.36 27.59 34.78 34.72 40.00 40.00 32.67 38.60 36.17 51.35 39.74 50.00 39.68 31.00 53.85 33.77 23.81 30.88 28.57 33.33 35.00 41.03 30.00 41.18 36.36 37.04 42.31 33.33 31.03 40.00 38.46 40.68 K intron_retention GlcAT-P,I_chr3L_11172482_11172633 chr3L - chr3L_11171632_11171747 chr3L_11171631_11171632;chr3L_11171747_11171748 chr3L_11170083_11171631;chr3L_11171748_11172038 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 K cassette Haspin chr2RHet + chr2RHet_3200480_3215266 chr2RHet_3200480_3215005;chr2RHet_3215210_3215266 chr2RHet_3215006_3215209 chr2RHet_3200469_3200479;chr2RHet_3215267_3215283 100.00 100.00 88.89 100.00 NA 100.00 100.00 100.00 96.55 NA 100.00 95.45 93.33 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 83.33 100.00 100.00 85.71 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG3348,RI_chr3R_23117734_23117847 chr3R - chr3R_23117716_23117847 chr3R_23117734_23117847 chr3R_23117848_23117947;chr3R_23117634_23117715 3.07 7.32 4.31 1.29 1.16 0.00 3.46 6.67 2.31 5.00 2.52 1.01 2.53 1.00 0.00 2.15 1.41 4.88 2.70 0.00 3.39 0.00 NA NA NA 7.37 NA NA 7.14 NA 2.24 6.02 8.51 2.74 NA NA NA NA NA 6.25 5.77 2.30 6.25 NA 1.11 4.76 NA 4.08 3.85 11.11 NA NA 8.00 NA 1.14 NA 9.09 1.39 K jcn_only_AD Aats-ile chr3L + chr3L_22281816_22281894 chr3L_22281841_22281894 chr3L_22281895_22282039;chr3L_22281762_22281815 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 99.19 100.00 100.00 100.00 100.00 100.00 97.67 98.11 97.30 97.30 100.00 97.98 100.00 100.00 100.00 100.00 96.15 NA 100.00 98.73 NA 100.00 100.00 NA 100.00 98.15 100.00 100.00 98.46 100.00 94.12 100.00 NA 96.49 100.00 100.00 NA NA 100.00 NA 98.67 100.00 100.00 100.00 NA 100.00 98.31 100.00 NA NA K alternative_donor CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1666219_1670203;chr2R_1666219_1669803;chr2R_1666219_1670325;chr2R_1666219_1670281 chr2R_1666219_1670219 chr2R_1666119_1666218;chr2R_1670326_1670328 22.50 37.50 25.00 14.63 25.00 16.00 18.75 18.75 26.92 17.65 16.67 31.75 22.50 25.00 23.08 11.48 17.95 21.88 12.82 20.00 29.73 25.00 26.67 15.79 26.32 17.86 22.73 12.50 28.00 26.67 32.65 11.76 34.78 25.00 24.00 37.50 30.77 22.22 21.05 16.33 38.10 16.46 17.65 15.62 35.29 25.00 40.00 26.67 21.74 0.00 4.35 19.05 20.00 30.00 25.49 18.18 18.75 26.79 K alternative_donor CG14235,noncoding_24847,CG18809,noncoding_24848 chrX - chrX_19635199_19638032 chrX_19635199_19637988 chrX_19634765_19635198;chrX_19638033_19638057 42.86 NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 18.18 NA 75.00 NA NA NA NA NA NA 42.86 NA NA NA 27.27 35.71 55.56 NA 55.56 NA NA NA NA NA NA NA NA NA 33.33 K intron_retention CoRest,I_chrX_19418197_19418377,CE_chrX_19418197_19419948,F_chrX_19418197_19421609,RF_chrX_19418197_19422673,F_chrX_19421697_19421747,F_chrX_19421868_19422673 chrX + chrX_19418197_19422667 chrX_19418196_19418197;chrX_19422667_19422668 chrX_19418097_19418196;chrX_19422668_19422856 1.33 3.12 3.70 6.98 3.23 0.00 0.00 2.11 1.60 1.16 0.00 1.40 0.00 1.79 1.27 1.00 0.00 0.00 1.33 1.15 0.00 2.04 1.22 5.66 0.00 0.00 1.75 16.67 3.00 0.00 0.00 1.64 2.05 1.69 5.17 4.41 4.49 1.79 1.15 0.93 0.00 2.48 0.00 0.00 1.42 2.21 4.65 1.25 3.31 1.82 0.00 0.00 0.00 0.00 2.35 3.57 0.00 0.40 K intron_retention CG13602,I_chr3R_19753657_19753715 chr3R - chr3R_19753657_19753717 chr3R_19753656_19753657;chr3R_19753717_19753718 chr3R_19753602_19753656;chr3R_19753718_19753815 17.05 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_120081_120420 chr2L_120081_120167;chr2L_120266_120420 chr2L_120168_120265 chr2L_119981_120080;chr2L_120421_120430 31.71 37.50 30.91 33.70 25.81 32.43 37.14 33.01 32.43 44.44 26.47 23.71 60.47 35.29 27.14 42.71 32.08 23.91 38.57 24.21 33.33 60.61 17.19 37.78 29.27 20.00 30.77 42.86 25.81 28.30 27.42 41.38 36.36 31.31 36.36 31.71 24.24 32.35 28.89 28.00 32.26 26.53 40.43 33.33 29.41 23.33 19.51 26.56 36.94 42.50 35.71 45.00 17.39 36.84 26.67 31.43 28.57 18.87 K intron_retention mor chr3R - chr3R_11797046_11797095 chr3R_11797045_11797046;chr3R_11797095_11797096 chr3R_11796715_11797045;chr3R_11797096_11798020 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.10 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 K alternative_donor RpL32,I_chr3R_25871509_25871807 chr3R - chr3R_25871509_25871851;chr3R_25871509_25871771;chr3R_25871509_25871611;chr3R_25871509_25871583 chr3R_25871509_25871855 chr3R_25871409_25871508;chr3R_25871856_25871862 97.56 98.03 98.33 98.27 98.36 98.65 98.06 98.53 98.42 94.96 98.11 98.26 98.77 98.96 98.78 98.16 98.76 98.29 98.74 98.55 98.19 93.65 92.91 95.74 96.08 98.33 94.33 94.23 91.37 92.69 97.76 96.52 93.86 98.17 93.24 92.65 97.56 96.52 96.28 96.74 93.59 98.61 98.28 95.83 96.55 93.86 97.16 94.01 98.57 96.48 92.25 95.40 98.00 93.75 98.55 95.01 97.93 95.37 K intron_retention Tis11,CR33963 chrX + chrX_12553582_12554566 chrX_12553581_12553582;chrX_12554566_12554567 chrX_12553495_12553581;chrX_12554567_12554665 5.56 0.00 9.09 10.00 NA 0.00 8.33 12.20 6.10 4.17 NA 4.08 0.00 0.00 10.53 6.85 0.00 NA 8.70 6.12 NA 20.00 0.00 0.00 3.85 10.00 25.00 21.05 8.16 19.23 7.14 NA 4.00 13.64 11.54 8.33 NA NA NA 5.26 5.56 8.70 0.00 4.26 NA 0.00 0.00 3.70 8.62 NA 0.00 6.67 NA NA 0.00 5.56 0.00 0.00 K intron_retention Ets97D chr3R - chr3R_22738041_22738095 chr3R_22738040_22738041;chr3R_22738095_22738096 chr3R_22737326_22738040;chr3R_22738096_22738165 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 11.11 0.00 4.76 8.33 0.00 6.45 2.78 20.51 0.00 0.00 0.00 3.39 1.37 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 2.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7889 chrX + chrX_19138691_19138751 chrX_19138690_19138691;chrX_19138751_19138752 chrX_19138623_19138690;chrX_19138752_19138817 1.13 0.00 2.94 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.38 0.00 0.00 0.00 0.00 1.23 0.00 3.08 2.94 2.90 2.33 0.00 6.35 4.65 29.63 1.64 0.00 0.00 1.03 2.17 1.72 8.51 1.41 0.00 0.00 2.35 2.44 1.85 0.00 1.59 0.96 2.00 0.00 2.80 0.00 3.17 1.32 0.00 1.67 2.06 0.00 0.00 3.70 1.82 K jcn_only_AD mia chr3R - chr3R_1374911_1375314 chr3R_1374911_1375297 chr3R_1374048_1374910;chr3R_1375315_1375484 16.00 NA NA NA NA NA NA NA 18.18 NA NA 33.33 NA NA NA NA NA NA NA 16.00 NA NA 20.00 10.53 NA NA 19.05 NA NA NA 70.00 NA NA NA NA NA 22.73 12.90 6.67 0.00 NA 30.43 NA NA NA NA NA NA 11.11 30.00 9.38 NA NA 13.33 NA 9.52 NA NA K intron_retention LanA,I_chr3L_6208090_6208194 chr3L - chr3L_6207843_6207901 chr3L_6207842_6207843;chr3L_6207901_6207902 chr3L_6207429_6207842;chr3L_6207902_6208089 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.32 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.13 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Crk,RI_chr4_231302_233315,I_chr4_231307_232253 chr4 + chr4_232421_232479 chr4_232420_232421;chr4_232479_232480 chr4_232279_232420;chr4_232480_232608 0.96 0.00 0.00 9.38 NA NA 7.69 1.92 2.33 NA 7.14 7.32 0.00 4.35 0.00 20.00 0.00 0.00 3.57 4.55 0.00 NA NA 0.00 0.00 NA 0.00 NA NA 0.00 10.53 NA NA 5.13 0.00 NA NA NA NA 0.00 0.00 6.38 8.70 0.00 NA 5.00 0.00 NA 9.68 0.00 4.76 0.00 0.00 NA 0.00 3.85 4.76 8.33 K alternative_donor Vrp1,I_chr2R_17997529_17997692 chr2R - chr2R_18000094_18003669 chr2R_18000094_18003655 chr2R_17999715_18000093;chr2R_18003670_18003673 85.71 NA NA 100.00 NA NA NA 72.73 73.33 NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 87.50 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA 72.73 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG42270,I_chrX_17615384_17615455,I_chrX_17639729_17640603 chrX + chrX_17644882_17645062 chrX_17644882_17645041 chrX_17644587_17644881;chrX_17645063_17645343 12.68 11.11 11.48 18.64 12.50 16.33 9.16 16.36 9.91 9.47 11.88 16.67 16.07 14.46 12.40 16.30 12.68 12.70 16.35 13.92 9.82 13.13 10.56 12.60 15.92 23.75 11.28 9.89 13.41 10.30 16.67 17.35 13.10 17.09 13.00 9.96 10.94 14.09 12.60 12.13 23.26 9.85 7.50 19.74 12.37 13.81 10.12 13.86 13.69 12.27 11.02 16.81 9.61 9.70 11.19 15.33 12.12 19.75 K jcn_only_AD Zyx102EF,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1081261_1081398;chr4_1081261_1081366 chr4_1081261_1081364 chr4_1081180_1081260;chr4_1081399_1081402 1.93 NA NA NA NA NA 0.00 NA 3.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CycG,RE_chr3R_27427953_27436598 chr3R - chr3R_27426326_27426395 chr3R_27426325_27426326;chr3R_27426395_27426396 chr3R_27426111_27426325;chr3R_27426396_27426770 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.44 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.12 0.00 0.22 0.00 0.00 1.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.36 0.18 0.25 0.00 0.24 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.28 0.00 0.00 0.00 0.00 0.00 K intron_retention Lk6 chr3R - chr3R_7581110_7581170 chr3R_7581109_7581110;chr3R_7581170_7581171 chr3R_7580899_7581109;chr3R_7581171_7581393 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon app,I_chr3L_12257837_12259754,I_chr3L_12257984_12259754,RI_chr3L_12258006_12259754,noncoding_12207,I_chr3L_12259361_12259754 chr3L - chr3L_12258006_12259754,chr3L_12258011_12259754,chr3L_12258047_12259754 chr3L_12259580_12259754 chr3L_12257721_12258005 chr3L_12259099_12259579 chr3L_12259755_12259854 10.00 10.00 13.33 11.76 14.29 10.00 11.54 9.52 9.38 20.00 11.11 14.29 7.14 5.00 8.33 9.09 8.33 10.00 13.33 10.53 12.50 0.00 10.00 0.00 10.00 22.22 25.00 NA 12.50 12.50 9.09 0.00 11.11 10.53 25.00 25.00 0.00 NA 0.00 8.33 20.00 8.33 9.09 12.50 NA 11.11 NA 8.33 13.04 NA 9.09 14.29 NA NA 13.33 NA 0.00 7.69 K jcn_only_AA simj,I_chr3L_10680263_10680313 chr3L + chr3L_10681698_10681790 chr3L_10681698_10681778 chr3L_10680765_10681697;chr3L_10681791_10681880 100.00 NA 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Dek chr2R + chr2R_12746755_12746820 chr2R_12746755_12746817 chr2R_12746566_12746754;chr2R_12746821_12746854 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.78 99.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.52 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.69 100.00 100.00 100.00 100.00 100.00 99.51 100.00 100.00 100.00 99.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.55 100.00 100.00 100.00 K jcn_only_AD RpL30,I_chr2L_19008540_19008948,REI_chr2L_19008544_19008723,I_chr2L_19008544_19008918,snoRNA:Me28S-A2113 chr2L - chr2L_19008544_19008723;chr2L_19008544_19008948 chr2L_19008544_19008918 chr2L_19008444_19008543;chr2L_19008949_19009018 0.03 0.00 0.00 0.02 0.00 0.00 0.03 0.03 0.01 0.05 0.04 0.03 0.04 0.00 0.02 0.00 0.00 0.02 0.00 0.02 0.09 0.21 0.03 0.05 0.00 0.06 0.02 0.07 0.18 0.02 0.21 0.04 0.05 0.01 0.02 0.02 0.05 0.05 0.03 0.10 0.04 0.03 0.00 0.05 0.03 0.02 0.05 0.05 0.09 0.07 0.06 0.02 0.05 0.03 0.02 0.04 0.02 0.01 K alternative_donor Shawn_Tyler,CG14216,Zw chrX + chrX_19558903_19558967 chrX_19558906_19558967 chrX_19558968_19559226;chrX_19558618_19558902 96.15 90.00 96.15 97.06 96.88 95.24 96.77 100.00 95.08 95.65 84.62 97.83 100.00 100.00 96.88 96.55 95.65 96.00 100.00 95.08 88.46 86.96 97.73 97.14 94.12 100.00 90.00 89.47 96.67 100.00 97.87 92.86 94.44 96.88 100.00 95.45 93.18 97.14 97.44 97.50 94.74 95.92 95.45 92.86 90.00 96.97 94.12 96.43 97.62 100.00 89.47 95.24 100.00 89.29 95.83 96.77 91.89 100.00 K jcn_only_AA Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911803_5913333;chr2R_5911708_5913333 chr2R_5911755_5913333 chr2R_5913334_5913352;chr2R_5911703_5911707 0.00 NA NA NA NA NA NA 12.50 13.16 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 3.33 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K cassette Rph,I_chrX_10646283_10647245,I_chrX_10647710_10648325,RI_chrX_10649048_10651427 chrX - chrX_10646283_10647245 chrX_10646283_10646360;chrX_10646529_10647245 chrX_10646361_10646528 chrX_10646250_10646282;chrX_10647246_10647345 74.67 NA NA NA NA NA NA 63.64 NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG18815 chr3L + chr3L_11621237_11621442 chr3L_11621236_11621237;chr3L_11621442_11621443 chr3L_11621124_11621236;chr3L_11621443_11621601 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.26 0.00 0.00 0.68 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1832,I_chr2L_22168644_22168740 chr2L - chr2L_22168644_22168887 chr2L_22168643_22168644;chr2L_22168887_22168888 chr2L_22168544_22168643;chr2L_22168888_22169038 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 1.11 0.00 0.00 1.43 1.90 0.00 0.00 3.39 0.00 0.00 0.00 2.04 9.09 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 4.65 1.82 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 1.04 K jcn_only_AD Lerp chr3R - chr3R_22688433_22688824;chr3R_22688433_22688796;chr3R_22688433_22688494 chr3R_22688433_22688772 chr3R_22688359_22688432;chr3R_22688825_22688828 38.10 NA NA 38.10 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG42533,F_chr2L_7476906_7476978 chr2L - chr2L_7474506_7476978 chr2L_7476906_7476978 chr2L_7476979_7477078;chr2L_7474406_7474505 1.72 2.63 0.00 1.33 3.03 3.33 9.38 0.00 1.30 NA 11.11 1.32 3.23 1.72 0.00 0.00 1.82 6.98 0.00 8.41 8.00 0.00 0.00 0.00 NA 0.00 3.70 NA 4.00 0.00 5.88 5.00 0.00 0.00 0.00 0.00 NA NA 0.00 1.79 0.00 2.22 0.00 0.00 NA 3.70 NA 2.86 3.88 7.41 6.25 NA NA 0.00 1.79 NA 0.00 8.11 K jcn_only_AD CG15715,RI_chr3L_15829349_15830356,I_chr3L_15830026_15830356,RI_chr3L_15830030_15830191,RI_chr3L_15830229_15830356 chr3L - chr3L_15830030_15830356 chr3L_15830030_15830191 chr3L_15830007_15830029;chr3L_15830357_15830456 5.50 9.33 2.25 4.27 5.00 1.92 11.24 0.86 4.20 5.26 0.00 3.45 7.84 2.82 2.11 3.88 6.78 7.69 3.66 6.38 4.35 17.46 5.50 5.61 4.76 8.82 3.16 11.67 2.78 13.73 0.88 10.77 4.55 0.74 5.00 1.47 11.29 6.17 8.45 9.38 2.04 2.84 5.88 11.27 17.74 6.80 8.82 11.63 5.18 6.17 8.00 7.41 9.52 4.71 1.08 2.94 5.74 7.62 K intron_retention CG14619,RI_chrX_21860097_21868647,I_chrX_21865109_21865522,I_chrX_21869837_21869915 chrX + chrX_21867359_21868000 chrX_21867358_21867359;chrX_21868000_21868001 chrX_21867326_21867358;chrX_21868001_21868211 9.30 9.09 12.50 21.74 7.41 5.00 14.89 17.39 10.10 13.21 13.16 14.15 NA 13.04 8.57 19.44 NA 8.57 13.79 15.18 2.63 11.11 8.79 6.94 8.45 0.00 8.33 8.33 3.45 11.48 10.34 9.09 9.57 11.11 10.71 6.15 5.70 4.41 7.37 10.53 23.08 10.75 9.52 9.30 15.22 7.32 5.88 11.76 9.78 12.82 15.62 8.57 2.22 3.92 4.76 9.09 6.15 8.00 K intron_retention cnc,I_chr3R_19014852_19016738,I_chr3R_19046366_19046507,I_chr3R_19046619_19047567 chr3R - chr3R_19035143_19035329 chr3R_19035142_19035143;chr3R_19035329_19035330 chr3R_19035064_19035142;chr3R_19035330_19035605 0.00 0.00 NA 0.00 NA 0.00 0.00 6.25 0.00 NA NA 9.09 23.08 10.53 0.00 5.26 0.00 7.14 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 3.45 0.00 0.00 NA 0.00 NA 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 NA 0.00 NA 0.00 NA 0.00 6.25 NA 0.00 0.00 NA NA 0.00 NA NA NA K alternative_donor lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3963608_3963797 chr2R_3963614_3963797 chr2R_3963798_3963953;chr2R_3963365_3963607 60.18 59.88 55.33 52.61 59.69 59.15 55.78 49.79 63.18 56.15 61.98 61.92 60.71 60.00 62.57 67.42 59.38 65.79 56.13 61.17 60.53 71.95 60.00 60.18 62.93 53.76 60.30 68.87 63.40 59.77 56.36 63.23 60.27 61.43 59.48 59.12 57.26 51.76 59.15 60.12 62.57 63.78 61.72 60.11 62.40 60.00 56.25 61.54 57.34 67.12 62.23 62.93 53.85 56.89 63.74 61.06 60.25 53.91 K alternative_acceptor I_chr2L_114992_156735,RI_chr2L_114992_155545,RI_chr2L_114992_155566,I_chr2L_114992_155637,I_chr2L_114992_156175,RI_chr2L_155430_155637,CG11455,CG3436 chr2L + chr2L_155430_155493;chr2L_155430_155637 chr2L_155430_155566 chr2L_155424_155429;chr2L_155638_155645 91.25 89.39 91.80 83.33 83.64 87.93 89.16 91.40 91.34 91.89 89.80 91.96 92.59 93.10 89.33 92.78 88.89 86.96 93.94 88.81 86.36 89.47 91.25 89.77 90.70 86.21 85.07 87.88 87.18 93.18 94.52 91.49 90.70 91.40 93.48 84.21 92.59 91.07 95.70 94.62 81.82 88.99 88.10 91.14 90.62 91.30 90.32 91.49 92.78 93.06 91.67 95.08 95.24 92.13 90.12 93.75 92.16 93.75 K cassette CG17549,I_chr2L_19387937_19387993,I_chr2L_19388570_19389922 chr2L - chr2L_19387770_19388039 chr2L_19387770_19387861;chr2L_19387937_19388039 chr2L_19387862_19387936 chr2L_19387538_19387769;chr2L_19388040_19388093 76.19 65.00 75.00 80.95 90.91 70.59 82.61 64.71 70.27 80.65 66.67 79.31 81.82 83.33 80.00 70.00 66.67 100.00 75.00 76.19 88.89 88.57 72.73 91.18 66.67 60.00 88.24 97.83 50.00 56.76 52.63 63.33 62.50 83.33 61.29 30.00 78.57 61.90 83.33 70.00 72.73 74.19 60.00 77.78 77.78 67.50 82.19 53.57 82.61 94.64 79.41 80.00 72.50 82.76 81.25 87.50 82.35 61.40 K jcn_only_AA Gel,I_chr3R_63540_64006,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_63540_64024;chr3R_63540_63897 chr3R_63540_64006 chr3R_63440_63539;chr3R_64025_64099 0.00 0.16 0.00 0.00 0.19 0.00 0.00 0.10 0.08 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.61 0.00 0.11 0.38 0.69 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.21 0.00 K alternative_acceptor Ssadh,RI_chr3R_21451890_21451963,I_chr3R_21452371_21452464,I_chr3R_21452407_21452453 chr3R - chr3R_21452368_21452453;chr3R_21452371_21452453 chr3R_21452386_21452453 chr3R_21452454_21452553;chr3R_21452307_21452367 5.00 0.00 12.50 6.67 NA NA 0.00 5.56 4.35 NA 0.00 4.55 8.33 7.14 9.09 5.88 NA 7.69 NA 4.00 NA 4.35 0.00 5.88 NA NA 4.76 10.00 NA 5.00 7.69 9.09 NA 0.00 0.00 5.26 8.70 5.00 0.00 5.26 NA 5.26 NA 0.00 12.50 9.52 5.00 0.00 5.00 7.69 3.85 NA 0.00 0.00 5.88 NA 4.00 0.00 K intron_retention CG1832,I_chr2L_22167179_22167302,I_chr2L_22168644_22168740 chr2L - chr2L_22167239_22167302 chr2L_22167238_22167239;chr2L_22167302_22167303 chr2L_22167050_22167238;chr2L_22167303_22167402 7.19 8.24 4.39 12.34 6.86 12.20 5.48 7.19 6.70 1.85 7.14 8.45 4.27 7.95 5.50 9.30 5.95 9.64 8.18 8.44 10.00 1.96 8.18 6.80 8.77 3.81 9.01 19.23 8.57 7.89 10.00 10.91 6.31 7.19 3.28 6.45 5.95 3.53 7.23 6.30 6.73 7.65 4.76 5.88 12.07 8.75 4.05 10.67 10.38 3.33 6.86 2.99 6.25 9.23 5.79 8.86 7.87 11.02 N jcn_only_AA I_chr3L_9481026_9484943,noncoding_11665 chr3L + chr3L_9481349_9481457;chr3L_9481349_9481415 chr3L_9481349_9484943 chr3L_9481282_9481348;chr3L_9484944_9485043 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG31108,RI_chr3R_20940642_20940700,CG31510 chr3R - chr3R_20940642_20940700 chr3R_20940646_20940700 chr3R_20940701_20940800;chr3R_20940542_20940641 95.59 NA NA 96.88 NA NA 100.00 NA 94.74 NA NA 92.86 NA NA NA NA NA NA NA 91.67 NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 96.43 NA NA NA NA NA NA NA NA NA N jcn_only_AD Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824086_11824186;chr2R_11824086_11824525 chr2R_11824086_11825790 chr2R_11823989_11824085 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 37.50 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 K jcn_only_AA CG14425,Sxl,CG14425_Sxl,CEFI_chrX_6981717_6984166,CEF_chrX_6984538_6992033 chrX - chrX_6982783_6985706 chrX_6982801_6985706 chrX_6985707_6985745;chrX_6982611_6982782 70.76 NA 68.75 80.00 NA NA 74.55 73.17 71.43 NA NA 70.83 64.00 NA 70.00 71.88 NA 55.00 NA 69.35 NA NA 64.00 71.43 76.00 NA 64.52 NA NA NA 65.38 NA NA 70.69 63.64 NA NA NA NA 63.64 NA 58.97 82.61 77.36 NA NA NA 62.50 73.91 NA 71.43 76.67 NA NA 80.00 52.00 NA NA K intron_retention CG11337,I_chr3R_27230306_27230374,RI_chr3R_27230320_27230374 chr3R - chr3R_27230306_27230374 chr3R_27230305_27230306;chr3R_27230374_27230375 chr3R_27230220_27230305;chr3R_27230375_27230410 30.07 NA NA NA NA NA 41.67 28.57 31.58 NA NA 17.65 NA NA 36.36 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG11790,CG11791 chr3R + chr3R_20875669_20876344;chr3R_20875669_20876354 chr3R_20875669_20876902 chr3R_20875600_20875668;chr3R_20876903_20877278 95.55 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 95.00 NA NA 95.00 95.65 NA NA 93.33 NA 91.67 NA NA 95.45 NA NA NA 100.00 96.30 K intron_retention I_chr3L_1494947_1496080,pUf68,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1500389_1501798 chr3L_1500388_1500389;chr3L_1501798_1501799 chr3L_1500289_1500388;chr3L_1501799_1501892 72.22 NA NA 30.00 NA NA NA 58.82 72.22 NA NA 56.25 78.57 NA NA 50.00 NA NA 57.14 76.92 NA NA 90.00 50.00 NA NA NA NA NA NA 30.00 NA NA 60.00 NA NA NA NA NA NA 87.50 61.54 NA 100.00 NA 90.91 NA 90.00 81.82 NA NA NA NA NA NA NA NA 77.78 K intron_retention CG34449,I_chrX_9222628_9227416,RI_chrX_9232665_9233022,RI_chrX_9249209_9250033,RI_chrX_9249212_9250033,RI_chrX_9249212_9250244 chrX - chrX_9227656_9231026 chrX_9227655_9227656;chrX_9231026_9231027 chrX_9227417_9227655;chrX_9231027_9231270 82.93 82.93 93.55 92.86 84.00 86.21 89.66 90.24 87.50 71.79 66.67 90.20 85.71 96.00 90.00 92.31 85.71 96.15 85.00 87.32 95.65 53.42 78.00 75.86 81.08 90.62 77.27 71.88 67.35 76.32 96.00 82.61 79.25 82.22 77.78 82.61 79.31 72.09 81.40 69.44 79.41 87.32 90.91 73.33 83.33 72.73 80.95 71.19 83.93 89.74 76.92 84.00 89.66 78.57 79.41 81.08 96.00 88.89 K cassette th,I_chr3L_16036172_16039584,I_chr3L_16036172_16043557 chr3L - chr3L_16033166_16039584 chr3L_16033166_16037613;chr3L_16037791_16039584 chr3L_16037614_16037790 chr3L_16033066_16033165;chr3L_16039585_16039684 3.91 3.73 3.98 1.73 3.01 3.43 2.38 1.89 3.41 5.00 5.13 5.64 3.62 3.37 2.77 4.16 3.16 4.48 2.29 13.83 7.81 1.96 6.43 4.57 4.03 2.61 3.37 6.02 14.00 4.00 6.15 5.66 2.67 2.39 3.76 2.41 9.41 6.38 7.44 7.58 3.05 3.85 2.68 4.00 4.94 5.10 5.47 8.33 2.70 3.17 3.91 4.81 3.70 3.95 3.24 3.54 2.69 4.02 K alternative_acceptor U26,fu12 chr2L - chr2L_8448354_8448424 chr2L_8448365_8448424 chr2L_8448425_8448706;chr2L_8447920_8448353 14.29 25.00 NA 14.29 NA NA 5.56 4.55 23.33 NA NA 13.64 NA NA 11.76 20.00 NA 7.14 NA 16.67 NA 21.05 13.33 20.00 NA NA 12.00 NA NA NA 25.00 NA NA 16.67 14.29 7.14 12.00 27.27 5.88 10.71 NA 15.38 NA 16.67 NA NA NA 19.05 10.00 NA 15.79 NA NA NA 12.50 NA NA NA K intron_retention Prestin chr3L - chr3L_17893192_17893257 chr3L_17893191_17893192;chr3L_17893257_17893258 chr3L_17893043_17893191;chr3L_17893258_17894001 0.00 0.00 0.00 2.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 1.82 0.59 0.00 0.00 0.00 1.32 3.15 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention lqf,I_chr3L_7522287_7522807 chr3L + chr3L_7528745_7529810 chr3L_7528744_7528745;chr3L_7529810_7529811 chr3L_7528643_7528744;chr3L_7529811_7529842 9.69 NA NA 15.79 NA NA NA 13.64 23.53 NA NA 15.79 14.29 NA 5.26 7.14 10.00 10.00 NA 15.91 NA 0.00 6.90 8.00 14.29 NA 0.00 NA NA 12.50 5.71 NA 0.00 9.09 NA NA 0.00 NA 0.00 NA NA 13.04 NA 12.00 NA 4.35 0.00 NA 26.92 NA 9.38 NA NA NA 14.29 0.00 14.29 NA K intron_retention tou,I_chr2R_7468394_7468453,RI_chr2R_7474644_7475275,I_chr2R_7479681_7491857,I_chr2R_7504956_7505020 chr2R - chr2R_7468368_7468453 chr2R_7468367_7468368;chr2R_7468453_7468454 chr2R_7468294_7468367;chr2R_7468454_7468553 47.50 46.15 51.92 68.75 56.82 58.49 42.42 40.00 49.48 60.82 50.00 48.96 50.00 47.50 40.38 40.54 36.96 70.37 46.15 50.51 43.90 48.08 37.67 38.89 49.38 45.28 50.00 53.39 83.01 52.66 57.50 65.71 40.64 40.28 50.00 45.31 39.80 44.44 44.70 57.58 63.33 47.79 42.86 36.79 56.11 76.30 45.00 81.39 44.79 41.84 47.32 45.61 42.05 47.44 52.54 38.64 31.25 63.53 K intron_retention CG4901 chr2L + chr2L_10212082_10212141 chr2L_10212081_10212082;chr2L_10212141_10212142 chr2L_10211451_10212081;chr2L_10212142_10212263 97.83 96.00 100.00 98.08 100.00 95.83 97.56 100.00 100.00 94.44 96.30 98.11 100.00 100.00 94.44 97.87 100.00 100.00 96.77 100.00 96.30 95.83 97.22 96.77 100.00 96.43 97.67 95.00 100.00 95.24 100.00 100.00 96.77 95.92 100.00 100.00 97.22 92.86 100.00 97.83 100.00 100.00 95.45 100.00 85.19 96.00 100.00 100.00 98.28 96.88 97.62 96.30 95.00 100.00 100.00 96.30 100.00 97.67 K jcn_only_AA CG18004 chr2R + chr2R_6773038_6773112 chr2R_6773038_6773094 chr2R_6772971_6773037;chr2R_6773113_6773178 100.00 100.00 100.00 98.25 97.78 96.77 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 96.88 100.00 99.00 100.00 100.00 100.00 100.00 NA 97.56 100.00 93.48 100.00 100.00 100.00 97.30 100.00 98.44 100.00 100.00 100.00 98.04 100.00 100.00 100.00 95.31 100.00 96.55 98.36 100.00 100.00 92.31 100.00 100.00 100.00 100.00 97.30 100.00 100.00 96.97 97.50 100.00 N jcn_only_AA noncoding_14363 chr3LHet - chr3LHet_709113_709194;chr3LHet_709103_709194 chr3LHet_709127_709194 chr3LHet_709195_709261;chr3LHet_709044_709102 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 6.51 0.00 8.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette TppII,GLaz chr2R - chr2R_9044136_9044391 chr2R_9044136_9044272;chr2R_9044336_9044391 chr2R_9044273_9044335 chr2R_9043581_9044135;chr2R_9044392_9044941 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 1.25 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Flo-2 chrX + chrX_14818447_14820768;chrX_14818447_14824779;chrX_14818447_14819678 chrX_14818447_14820798 chrX_14818259_14818446 86.18 84.09 94.03 41.56 95.35 94.12 91.67 81.40 85.39 90.00 93.55 84.31 90.00 97.30 86.15 77.46 79.49 91.89 77.78 81.25 90.24 85.96 89.58 77.78 72.00 94.34 86.21 NA 80.56 76.92 85.71 84.21 74.16 80.26 89.74 88.89 91.67 83.33 85.71 94.92 82.50 84.55 87.50 93.33 83.33 77.97 88.89 74.12 82.47 86.67 91.38 95.45 89.66 90.00 87.67 90.48 83.33 88.46 K jcn_only_AA cno,I_chr3R_999718_999986,I_chr3R_999737_999777,RI_chr3R_1002318_1003015 chr3R - chr3R_1002013_1003015 chr3R_1002318_1003015 chr3R_1003016_1003115;chr3R_999987_1002012 0.00 5.17 0.00 9.59 2.44 0.00 6.49 2.82 2.80 0.00 0.00 1.08 0.00 0.00 7.14 5.71 2.63 0.00 0.00 0.00 0.00 1.18 2.11 0.00 0.00 0.00 6.85 5.45 0.00 0.00 0.00 0.00 0.00 2.38 2.25 0.00 0.00 0.00 0.91 0.00 0.00 3.36 0.00 1.54 0.00 0.00 1.56 0.69 2.13 2.30 1.82 0.00 0.00 0.00 0.00 2.17 0.00 0.00 K intron_retention CG8709,I_chr2R_4026143_4026205,I_chr2R_4027128_4027182,I_chr2R_4027682_4027747,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4026098_4026442 chr2R_4026097_4026098;chr2R_4026442_4026443 chr2R_4026043_4026097;chr2R_4026443_4026546 50.00 NA NA NA NA NA 60.00 NA 50.00 NA NA 50.00 NA NA 54.55 33.33 NA NA NA 55.56 NA 46.15 45.45 NA NA NA 80.00 61.54 30.43 NA NA NA NA 50.00 NA NA 41.67 NA 42.11 25.00 NA 30.77 NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA 28.57 60.00 K jcn_only_AA dorsal,RI_chr2L_17438018_17439189,FI_chr2L_17449369_17450215,noncoding_3500,RI_chr2L_17450002_17450219 chr2L - chr2L_17449369_17450219 chr2L_17450002_17450219 chr2L_17450220_17450306 2.30 2.56 2.94 0.00 3.85 0.00 6.67 0.00 0.93 7.89 0.00 0.00 0.00 0.00 3.90 2.19 2.94 3.92 3.57 1.90 1.85 2.53 1.22 2.33 0.00 2.63 0.00 NA 2.27 5.43 2.44 3.41 4.63 0.89 1.06 0.00 8.70 0.00 0.00 1.75 4.08 1.77 2.63 1.82 10.53 7.09 4.55 6.75 1.60 2.08 6.25 4.84 2.86 0.00 0.00 4.76 0.00 4.73 K intron_retention CG8635 chr2R - chr2R_4519012_4519137 chr2R_4519011_4519012;chr2R_4519137_4519138 chr2R_4518577_4519011;chr2R_4519138_4519178 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 1.82 0.00 0.00 6.82 6.38 0.00 3.57 1.37 0.00 0.00 0.00 2.50 3.57 0.00 0.00 0.00 3.12 0.00 1.80 0.00 0.00 0.00 0.00 3.03 1.19 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 K intron_retention CG1868,CG12929,RI_chr2R_5474101_5474150 chr2R - chr2R_5469956_5470009 chr2R_5469955_5469956;chr2R_5470009_5470010 chr2R_5469634_5469955;chr2R_5470010_5471030 16.52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.38 NA K alternative_acceptor CG7081,I_chr3L_8332291_8332360,DNApol-alpha50 chr3L + chr3L_8332291_8332360 chr3L_8332291_8332356 chr3L_8332275_8332290;chr3L_8332361_8332424 95.09 NA 100.00 92.86 NA NA 94.12 92.86 100.00 NA NA 91.67 NA 87.50 90.91 94.74 NA NA 93.33 95.45 NA 87.50 NA NA NA 100.00 NA NA NA NA 87.50 NA 100.00 100.00 NA NA NA NA 100.00 100.00 100.00 100.00 NA 100.00 NA 90.00 NA 91.67 100.00 NA 100.00 NA NA NA 100.00 NA 93.33 93.75 K intron_retention RpS16,RI_chr2R_18493796_18494013,I_chr2R_18494146_18494441,snoRNA:Me28S-G2173 chr2R + chr2R_18494146_18494438 chr2R_18494145_18494146;chr2R_18494438_18494439 chr2R_18494046_18494145;chr2R_18494439_18494553 0.00 0.00 0.02 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.04 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette PhKgamma,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11592631_11597322 chrX_11592631_11593355;chrX_11593440_11594653;chrX_11595161_11597322 chrX_11593356_11593439;chrX_11594654_11595160 chrX_11592533_11592630;chrX_11597323_11597422 10.00 NA NA 9.09 NA NA NA 10.00 9.09 NA NA 60.00 0.00 NA NA NA NA NA NA 13.33 NA 4.55 18.18 NA 28.57 NA 9.09 0.00 NA 10.00 NA NA NA NA 10.00 NA 16.67 NA 10.00 14.29 NA 7.69 NA 12.50 NA 15.38 NA 8.33 12.50 10.00 14.29 NA NA 11.11 20.00 NA NA NA K jcn_only_AD CG9705,I_chr3L_16773492_16773604,I_chr3L_16773517_16773604,I_chr3L_16774043_16774562 chr3L + chr3L_16773492_16773604;chr3L_16773517_16773604 chr3L_16773521_16773604 chr3L_16773605_16773704;chr3L_16773417_16773491 99.07 98.21 98.40 100.00 99.04 98.20 98.25 97.28 98.46 98.48 97.35 100.00 99.02 100.00 100.00 98.12 100.00 96.55 100.00 99.68 100.00 100.00 100.00 98.23 98.77 98.36 98.84 97.10 100.00 100.00 98.31 99.21 98.12 98.22 100.00 98.89 100.00 98.80 100.00 98.74 99.30 99.49 100.00 100.00 99.39 100.00 100.00 98.97 98.60 100.00 99.07 100.00 100.00 100.00 98.37 100.00 98.99 98.47 K alternative_acceptor Ncc69,I_chr3L_12364701_12364860 chr3L - chr3L_12364701_12364860 chr3L_12364704_12364860 chr3L_12364861_12364960;chr3L_12364644_12364700 100.00 95.83 100.00 95.65 93.33 94.74 93.75 100.00 97.50 100.00 100.00 98.04 93.33 100.00 95.83 97.14 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 95.00 96.00 100.00 96.67 100.00 100.00 96.15 100.00 95.45 100.00 100.00 100.00 95.45 100.00 97.37 100.00 93.75 100.00 100.00 93.33 96.67 100.00 96.00 100.00 100.00 100.00 100.00 98.95 K jcn_only_AD CG6812 chr3L + chr3L_19056810_19057426 chr3L_19056817_19057426 chr3L_19057427_19057695;chr3L_19056268_19056809 100.00 100.00 95.65 100.00 NA NA NA NA 97.06 NA NA 97.14 NA NA 100.00 100.00 NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 96.43 NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA 92.68 NA NA NA NA NA NA NA NA NA N alternative_acceptor CG1416,I_chr2L_21758100_21758179,I_chr2L_21758143_21758183,I_chr2L_21758143_21758209 chr2L + chr2L_21758143_21758209;chr2L_21758143_21758205;chr2L_21758143_21758183 chr2L_21758143_21758201 chr2L_21758116_21758142;chr2L_21758210_21758279 70.81 73.55 75.00 70.93 74.03 74.17 71.93 65.45 66.94 57.83 71.74 69.97 71.96 63.69 60.19 63.60 75.00 67.18 73.24 69.03 72.82 75.82 70.29 68.45 70.59 70.67 70.00 70.81 69.23 71.21 65.48 72.87 72.66 66.51 71.52 62.50 73.58 73.96 65.69 68.21 70.62 65.10 72.92 74.31 75.00 72.90 65.85 71.86 66.27 74.23 73.41 64.35 73.33 72.00 69.19 73.68 66.52 67.21 K jcn_only_AD AGO2 chr3L + chr3L_15550996_15551349 chr3L_15551218_15551349 chr3L_15551350_15551438;chr3L_15550832_15550995 99.84 99.69 100.00 99.73 100.00 100.00 99.82 99.82 99.84 99.50 98.86 99.84 99.60 99.65 99.33 100.00 99.59 100.00 99.37 100.00 99.65 100.00 100.00 99.74 100.00 100.00 99.57 100.00 100.00 99.42 100.00 100.00 100.00 99.61 100.00 98.21 99.70 99.68 100.00 99.80 100.00 100.00 100.00 100.00 100.00 99.71 100.00 99.77 99.82 98.92 99.42 100.00 99.45 100.00 100.00 100.00 100.00 99.55 K intron_retention CG14803,CG14805 chrX + chrX_1763912_1763976 chrX_1763911_1763912;chrX_1763976_1763977 chrX_1763335_1763911;chrX_1763977_1766384 0.00 3.85 0.00 10.00 0.00 0.00 0.00 2.56 0.00 NA 0.00 6.25 4.35 0.00 0.00 10.81 0.00 13.79 0.00 5.77 5.56 NA 2.94 9.09 NA 9.52 17.39 17.65 NA 0.00 6.25 NA NA 0.00 0.00 NA 5.56 0.00 5.41 0.00 NA 0.00 5.88 14.29 NA 0.00 0.00 NA 4.44 0.00 0.00 0.00 NA 6.67 0.00 0.00 4.17 NA K intron_retention Pk61C,CE_chr3L_129889_141769 chr3L + chr3L_135843_135966 chr3L_135842_135843;chr3L_135966_135967 chr3L_135458_135842;chr3L_135967_136335 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.06 8.93 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG9636,RI_chr3R_4068335_4068401 chr3R - chr3R_4068299_4068401 chr3R_4068335_4068401 chr3R_4068402_4068501;chr3R_4068235_4068298 1.92 0.00 1.89 2.04 4.55 0.00 1.59 5.88 3.19 4.76 0.00 5.63 0.00 2.50 0.00 2.78 0.00 1.82 5.00 1.16 0.00 0.00 5.41 1.75 0.00 1.92 1.82 0.00 2.08 0.00 0.00 2.86 5.08 3.95 2.94 1.85 1.59 0.00 0.00 4.55 5.56 2.60 2.50 4.35 2.94 0.00 2.27 2.27 4.11 3.77 0.00 0.00 0.00 0.00 1.92 2.50 0.00 7.02 K intron_retention RI_chr2R_3817895_3817951,RI_chr2R_3819348_3819403,CG8728 chr2R - chr2R_3825881_3825941 chr2R_3825880_3825881;chr2R_3825941_3825942 chr2R_3825464_3825880;chr2R_3825942_3826320 0.00 0.00 0.00 1.27 1.28 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.92 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG1603 chr2R - chr2R_3403403_3403472 chr2R_3403412_3403472 chr2R_3403473_3403878;chr2R_3403148_3403402 100.00 NA NA 100.00 NA NA NA 95.45 94.29 NA NA 96.30 NA NA NA 96.15 NA NA NA 100.00 NA 100.00 NA NA NA NA 100.00 NA 100.00 100.00 NA 100.00 92.86 100.00 NA NA NA NA 100.00 100.00 100.00 96.15 NA 100.00 NA 96.15 NA 98.46 100.00 NA NA NA NA NA NA NA NA 100.00 K alternative_donor CycD,I_chrX_15803256_15803313 chrX - chrX_15803256_15803563 chrX_15803256_15803452 chrX_15803156_15803255;chrX_15803564_15803677 17.27 23.08 25.00 28.12 NA 16.67 35.14 16.36 28.57 NA NA 14.89 26.67 23.81 15.79 11.32 25.00 11.76 29.41 15.09 NA 35.71 17.86 16.67 41.67 NA 21.05 NA 33.33 12.50 12.50 20.00 33.33 20.00 10.53 22.22 NA 14.29 13.33 18.75 36.84 15.79 30.77 21.74 5.88 3.85 10.00 15.15 14.89 12.50 14.81 14.29 0.00 11.76 19.05 9.09 21.05 21.05 K jcn_only_AA Tre1,I_chrX_5569518_5570588 chrX - chrX_5568186_5568254 chrX_5568207_5568254 chrX_5568255_5568742;chrX_5567863_5568185 0.40 0.00 0.00 0.77 1.95 0.00 1.11 0.00 1.21 1.40 0.00 0.00 0.81 0.60 0.37 0.43 0.59 0.94 0.00 0.89 0.00 0.74 0.00 0.24 0.00 2.27 0.00 0.00 1.00 0.28 0.44 0.00 0.00 0.36 0.00 0.78 0.59 0.52 0.43 0.49 0.44 0.22 0.64 0.28 0.00 0.40 0.76 0.83 0.00 0.00 0.46 1.14 0.29 0.64 0.35 0.00 0.20 0.52 K intron_retention CG4644 chr2L - chr2L_1107950_1108015 chr2L_1107949_1107950;chr2L_1108015_1108016 chr2L_1107812_1107949;chr2L_1108016_1108360 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL28,RI_chr3L_3221710_3221877,snoRNA:Me28S-C3351 chr3L - chr3L_3221710_3221881 chr3L_3221709_3221710;chr3L_3221881_3221882 chr3L_3221610_3221709;chr3L_3221882_3221977 0.01 0.01 0.03 0.00 0.00 0.00 0.00 0.03 0.01 0.04 0.00 0.03 0.05 0.02 0.00 0.04 0.00 0.00 0.00 0.03 0.00 0.03 0.01 0.04 0.00 0.00 0.13 0.17 0.00 0.02 0.00 0.00 0.00 0.03 0.00 0.02 0.03 0.03 0.01 0.00 0.00 0.03 0.03 0.00 0.01 0.02 0.02 0.00 0.01 0.01 0.00 0.05 0.00 0.02 0.00 0.00 0.03 0.04 K alternative_last_exon yuri chr2L - chr2L_15257587_15257798 chr2L_15257704_15257798 chr2L_15257267_15257586 chr2L_15257635_15257703 chr2L_15257799_15257976 0.00 0.00 NA 0.00 14.29 NA 0.00 NA 0.00 20.00 NA 0.00 NA NA NA 12.50 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA NA NA NA 20.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Spred,I_chr2R_10655876_10656041,I_chr2R_10655876_10656193,I_chr2R_10655876_10656868 chr2R - chr2R_10655876_10656848;chr2R_10655876_10656878;chr2R_10655876_10656526;chr2R_10655876_10656871 chr2R_10655876_10656782 chr2R_10655776_10655875;chr2R_10656879_10656886 96.36 100.00 89.47 95.00 96.30 90.62 100.00 96.83 93.06 NA 95.65 97.83 96.88 94.74 98.00 95.31 100.00 89.29 96.97 95.83 97.30 NA 100.00 95.00 NA 92.86 95.83 100.00 NA 100.00 97.44 NA NA 95.24 91.89 95.35 NA NA NA 96.36 NA 90.00 96.15 93.88 NA 100.00 93.33 100.00 94.12 100.00 98.08 100.00 96.30 100.00 97.62 100.00 100.00 NA K jcn_only_AD cno,I_chr3R_999718_999986,I_chr3R_999737_999777,I_chr3R_1011213_1011336 chr3R - chr3R_1011213_1013029 chr3R_1011213_1011336 chr3R_1011113_1011212;chr3R_1013030_1013382 12.39 14.52 7.69 2.17 12.50 19.05 17.24 7.94 10.87 6.35 16.67 9.09 12.90 10.81 4.65 15.62 14.29 4.65 28.57 9.52 8.11 17.17 9.48 12.77 8.96 6.90 12.40 29.81 34.29 13.92 10.81 NA 11.01 11.48 7.27 7.41 12.84 7.69 6.76 15.38 13.64 19.05 11.43 13.04 14.29 16.33 8.70 27.69 9.38 27.42 12.38 17.02 0.00 8.57 16.33 19.57 11.11 18.18 K jcn_only_AA gro chr3R + chr3R_21871550_21872260 chr3R_21871550_21872257 chr3R_21871451_21871549;chr3R_21872261_21872314 99.59 100.00 100.00 100.00 100.00 98.95 100.00 98.85 99.59 100.00 98.97 99.56 100.00 99.12 99.20 99.44 98.85 99.32 100.00 100.00 99.03 99.29 100.00 99.42 98.72 100.00 99.42 100.00 100.00 100.00 99.24 100.00 98.92 98.99 100.00 100.00 99.44 99.41 100.00 99.48 99.03 98.30 99.01 98.13 100.00 100.00 99.17 100.00 99.24 98.84 100.00 100.00 100.00 99.29 100.00 100.00 100.00 100.00 K jcn_only_AA Acon,I_chr2L_21168805_21168878,I_chr2L_21168805_21170166 chr2L + chr2L_21168805_21170190;chr2L_21168805_21170166 chr2L_21168805_21168878 chr2L_21168705_21168804;chr2L_21170191_21170266 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.35 0.00 0.37 0.30 0.73 0.00 0.00 0.42 0.36 0.00 0.00 0.19 0.31 0.00 0.47 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.44 0.00 0.35 0.26 0.92 0.00 0.20 0.00 0.00 0.33 0.37 0.00 0.28 0.17 0.00 0.68 0.47 0.00 0.00 0.34 0.00 0.00 0.00 K intron_retention gpp,I_chr3R_2271795_2272181 chr3R + chr3R_2232800_2233199 chr3R_2232799_2232800;chr3R_2233199_2233200 chr3R_2232745_2232799;chr3R_2233200_2233496 90.00 NA 86.67 83.33 NA 90.00 92.86 94.74 84.38 NA NA 88.89 NA NA 88.89 87.50 72.73 66.67 93.75 94.12 NA 92.86 91.67 NA 100.00 90.00 75.00 90.00 100.00 88.89 100.00 NA 85.71 94.44 87.50 93.33 NA NA NA 90.00 NA 88.24 75.00 100.00 NA 100.00 NA 96.15 84.21 100.00 92.31 NA NA NA 92.86 NA NA 90.91 K intron_retention I_chr3R_19753657_19753715,Pros26_4,RI_chr3R_19759126_19759198 chr3R - chr3R_19756985_19757045 chr3R_19756984_19756985;chr3R_19757045_19757046 chr3R_19755549_19756984;chr3R_19757046_19757263 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605,CG17258 chr2L - chr2L_3029007_3029063 chr2L_3029006_3029007;chr2L_3029063_3029064 chr2L_3028366_3029006;chr2L_3029064_3029139 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 2.00 10.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1622,REI_chrX_13191277_13191339,I_chrX_13191916_13192167,I_chrX_13192409_13192738,EI_chrX_13192857_13192928 chrX + chrX_13191926_13192738 chrX_13191925_13191926;chrX_13192738_13192739 chrX_13191916_13191925;chrX_13192739_13192838 28.34 42.86 37.50 26.32 23.08 22.22 50.00 40.00 35.00 33.33 31.25 51.61 25.00 NA 35.29 23.08 25.00 45.45 28.57 29.17 30.00 74.19 27.50 44.00 30.43 22.22 20.69 26.32 40.43 18.75 14.58 33.33 21.88 19.05 30.00 51.72 26.09 28.12 27.27 35.29 37.50 27.27 25.00 29.41 26.32 26.47 36.36 31.25 36.67 26.47 26.32 38.10 26.09 13.89 20.00 22.22 26.67 36.36 K intron_retention MRP,F_chr2L_12727117_12736035 chr2L + chr2L_12722485_12722558 chr2L_12722484_12722485;chr2L_12722558_12722559 chr2L_12722355_12722484;chr2L_12722559_12724070 2.23 2.53 1.11 9.55 2.80 2.36 1.91 3.08 1.75 1.35 2.97 1.90 2.55 2.03 2.96 2.49 1.40 0.64 3.36 2.23 1.52 27.06 2.02 1.96 4.10 3.73 3.60 8.20 4.98 3.03 1.85 0.99 1.36 1.64 3.64 3.23 2.13 2.96 3.14 1.49 2.76 2.52 0.71 1.37 0.00 2.53 0.00 4.10 2.26 2.40 3.32 0.00 0.00 0.00 0.50 1.80 0.00 1.03 K jcn_only_AD Iswi chr2R + chr2R_8524243_8524348 chr2R_8524287_8524348 chr2R_8524349_8524495;chr2R_8524226_8524242 6.98 12.50 10.71 5.45 4.41 10.00 12.12 13.40 7.32 9.52 9.26 6.98 19.64 2.33 5.36 5.08 9.23 9.30 7.89 5.94 10.53 13.04 5.88 8.11 NA 2.50 11.11 NA NA 4.17 10.00 NA NA 9.57 3.85 NA 3.77 0.00 4.35 6.67 NA 11.65 14.63 2.04 NA 4.76 3.45 4.55 5.49 8.70 9.30 1.82 NA NA 9.09 4.35 3.70 4.55 K intron_retention Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5007337_5007415 chr2R_5007336_5007337;chr2R_5007415_5007416 chr2R_5007258_5007336;chr2R_5007416_5007503 100.00 88.89 95.45 100.00 100.00 100.00 100.00 100.00 97.44 100.00 93.33 100.00 100.00 94.12 100.00 100.00 100.00 100.00 93.10 100.00 100.00 NA 95.24 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 96.43 100.00 100.00 100.00 94.44 90.91 100.00 100.00 100.00 97.56 96.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 K intron_retention lid,I_chr2L_5996532_5997682,I_chr2L_5996532_5998072,I_chr2L_5996532_5999224 chr2L - chr2L_5996532_5999297 chr2L_5996531_5996532;chr2L_5999297_5999298 chr2L_5996432_5996531;chr2L_5999298_5999324 2.68 0.00 0.00 2.50 0.00 0.00 4.55 0.00 4.08 0.00 0.00 6.90 4.35 4.88 0.00 2.00 3.70 6.25 5.00 4.17 0.00 12.00 2.86 2.50 0.00 5.00 11.63 3.12 NA 0.00 0.00 NA 4.35 3.33 0.00 6.90 0.00 6.67 3.33 6.82 NA 1.56 6.67 0.00 NA NA NA 0.00 1.41 NA 6.06 0.00 NA NA 0.00 6.67 NA NA K jcn_only_AA CG13384 chr2L + chr2L_8386386_8386483;chr2L_8386386_8386486 chr2L_8386386_8386474 chr2L_8386217_8386385;chr2L_8386487_8387378 35.70 37.31 34.32 35.45 36.00 36.25 33.62 34.99 40.34 41.67 35.41 36.76 34.99 34.07 33.13 38.64 32.61 33.96 34.35 40.29 34.49 36.31 38.98 36.68 37.02 35.04 33.87 32.14 34.70 32.84 35.45 36.10 35.91 36.85 35.91 35.19 39.67 39.46 40.90 31.14 35.70 36.63 39.08 35.72 36.36 34.57 33.15 37.28 35.68 39.00 40.19 36.80 31.26 34.88 35.28 35.95 34.09 34.42 K jcn_only_AD skpA chrX + chrX_550433_551131;chrX_550498_551131;chrX_550818_551131;chrX_550774_551131;chrX_550523_551131;chrX_550654_551131 chrX_550638_551131 chrX_551132_551937;chrX_550426_550432 10.27 14.21 9.87 20.08 9.21 9.35 18.75 19.15 5.87 12.20 13.10 15.08 8.74 11.64 9.55 9.71 8.76 26.78 14.20 10.64 15.11 7.63 10.78 13.30 14.68 15.59 13.64 8.38 14.86 8.90 7.65 6.56 6.18 8.64 15.56 7.32 8.29 6.84 11.00 7.52 14.17 9.89 10.17 7.00 10.37 10.20 5.92 7.81 10.27 11.41 13.30 9.09 8.82 11.50 12.94 8.60 14.65 10.57 K alternative_acceptor janA,RI_chr3R_25864678_25864966,I_chr3R_25864692_25864783,I_chr3R_25871509_25871807 chr3R - chr3R_25864678_25864783 chr3R_25864692_25864783 chr3R_25864784_25864883;chr3R_25864592_25864677 0.00 0.00 1.01 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Mbs,I_chr3L_16045251_16046108,I_chr3L_16057100_16057329 chr3L + chr3L_16059210_16059712 chr3L_16059209_16059210;chr3L_16059712_16059713 chr3L_16059161_16059209;chr3L_16059713_16059929 0.00 0.00 0.80 1.24 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.85 1.23 0.00 0.00 0.00 0.00 0.87 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8320 chr2R + chr2R_11880635_11880691 chr2R_11880634_11880635;chr2R_11880691_11880692 chr2R_11880498_11880634;chr2R_11880692_11881212 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 2.38 0.00 0.00 0.00 0.00 1.92 0.00 0.00 4.08 1.61 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 4.00 3.39 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 K intron_retention I_chr2R_5171635_5172166,CG2063,TXBP181-like chr2R - chr2R_5173854_5173919 chr2R_5173853_5173854;chr2R_5173919_5173920 chr2R_5173108_5173853;chr2R_5173920_5174094 0.00 3.23 0.00 2.78 6.67 4.35 0.00 0.00 0.00 0.00 0.00 3.51 0.00 3.33 0.00 0.00 4.17 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 5.56 0.00 4.00 0.00 3.70 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 4.44 2.17 0.00 2.08 0.00 0.00 0.00 4.88 5.26 0.00 7.55 3.45 4.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette CG11537,I_chr3L_3133339_3133648,RI_chr3L_3133339_3133976,I_chr3L_3133339_3134058,I_chr3L_3133339_3139807,I_chr3L_3133339_3142827,I_chr3L_3133419_3133948 chr3L - chr3L_3131205_3142827 chr3L_3131205_3132308;chr3L_3132558_3132632;chr3L_3133339_3142827 chr3L_3132309_3132557;chr3L_3132633_3133338 chr3L_3131109_3131204;chr3L_3142828_3142927 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.94 4.44 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 3.17 1.12 3.70 2.56 1.89 1.45 5.00 1.32 1.67 0.00 0.00 1.09 0.00 1.72 1.67 1.02 1.54 1.54 0.84 1.64 0.72 0.00 1.59 1.49 0.00 2.13 0.00 1.68 2.27 1.54 0.00 3.33 3.23 0.00 0.00 2.38 1.27 K jcn_only_AA Mkrn1 chr3L - chr3L_21526279_21526666 chr3L_21526287_21526666 chr3L_21526667_21526778;chr3L_21525439_21526278 100.00 100.00 100.00 100.00 92.00 100.00 98.21 98.48 97.44 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 NA 97.22 98.51 NA 100.00 95.65 100.00 97.67 85.71 96.34 92.00 91.89 96.30 100.00 NA 96.00 100.00 100.00 100.00 98.70 98.41 100.00 98.31 96.15 100.00 100.00 98.91 100.00 97.62 100.00 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 100.00 100.00 94.12 K alternative_last_exon CG10512,noncoding_13930,EF_chr3L_21197939_21198776 chr3L + chr3L_21196423_21200535 chr3L_21196423_21198776 chr3L_21200536_21201198 chr3L_21198777_21199726 chr3L_21196220_21196422 97.78 100.00 100.00 96.67 100.00 94.12 91.30 96.30 97.78 100.00 93.75 95.45 95.65 95.24 95.00 95.45 96.00 96.67 94.12 97.44 83.33 100.00 96.55 100.00 100.00 100.00 97.14 100.00 95.45 100.00 100.00 92.31 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 97.44 94.74 100.00 100.00 94.12 100.00 95.83 98.08 100.00 100.00 95.83 100.00 100.00 96.30 100.00 100.00 95.45 K intron_retention CG6359,I_chr3R_8454231_8454610 chr3R + chr3R_8454231_8454610 chr3R_8454230_8454231;chr3R_8454610_8454611 chr3R_8454210_8454230;chr3R_8454611_8454706 100.00 100.00 100.00 100.00 91.67 95.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 95.45 95.45 100.00 100.00 100.00 100.00 94.74 96.97 98.39 100.00 100.00 100.00 97.37 95.83 100.00 100.00 100.00 100.00 96.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 94.74 100.00 96.00 100.00 100.00 95.83 100.00 97.73 97.62 100.00 97.56 97.44 95.65 100.00 98.31 100.00 K cassette Nipped-B,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_615459_615937 chr2R_615459_615513;chr2R_615630_615937 chr2R_615514_615629 chr2R_615299_615458;chr2R_615938_615993 86.67 73.91 74.29 76.00 84.21 94.74 85.56 79.41 92.54 83.33 95.00 86.96 97.06 84.85 85.19 88.33 82.61 68.75 90.00 88.89 95.00 95.65 88.10 94.74 82.61 39.29 86.67 90.48 48.15 68.18 85.71 NA 63.33 89.86 95.45 78.12 87.50 68.42 91.67 90.00 88.89 87.50 88.24 88.89 NA 90.00 85.71 73.33 88.71 90.91 84.21 88.89 71.43 NA 78.12 NA 83.33 72.73 K intron_retention CG3714,I_chr2L_4190825_4191774,I_chr2L_4191897_4192115,I_chr2L_4191897_4192632,I_chr2L_4192178_4192632,I_chr2L_4195905_4196470,RI_chr2L_4196780_4197951 chr2L - chr2L_4191897_4192632 chr2L_4191896_4191897;chr2L_4192632_4192633 chr2L_4191797_4191896;chr2L_4192633_4192688 12.50 NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG12004 chr3L + chr3L_1573621_1573679 chr3L_1573620_1573621;chr3L_1573679_1573680 chr3L_1573546_1573620;chr3L_1573680_1573764 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 0.00 0.00 0.81 1.38 2.20 2.33 19.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_donor CG31216 chr3R + chr3R_15522379_15523033 chr3R_15522974_15523033 chr3R_15523034_15523168;chr3R_15522274_15522378 8.33 7.27 6.00 3.66 5.66 8.33 8.22 6.59 7.21 12.00 4.26 4.39 5.26 5.17 8.47 3.75 4.26 11.63 4.82 8.00 8.33 41.89 11.29 18.75 17.39 7.55 9.09 12.50 16.92 6.90 9.64 10.71 13.24 6.98 14.71 13.21 10.87 10.64 18.92 12.26 11.49 6.90 5.36 7.84 16.33 5.60 16.67 9.21 7.29 11.76 14.04 8.82 10.00 11.76 5.41 7.84 5.88 4.05 K intron_retention CG17698 chr3L + chr3L_23741161_23741239 chr3L_23741160_23741161;chr3L_23741239_23741240 chr3L_23741051_23741160;chr3L_23741240_23741392 0.00 0.00 0.00 11.32 0.00 0.00 7.69 4.69 5.63 NA 0.00 2.90 9.52 6.00 2.63 6.78 0.00 0.00 5.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 8.11 NA NA 0.00 0.00 0.00 NA 4.00 0.00 NA 0.00 0.00 0.00 0.00 NA 1.27 2.50 0.00 NA 0.00 0.00 5.56 2.70 0.00 0.00 0.00 0.00 NA 4.08 0.00 0.00 0.00 K alternative_donor CaMKII,I_chr4_1069766_1069812,I_chr4_1071236_1071307,RI_chr4_1071236_1071315,I_chr4_1071489_1071884,RI_chr4_1071489_1071968,I_chr4_1071569_1071884,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1071236_1071884;chr4_1071236_1071813;chr4_1071236_1072054;chr4_1071236_1071319 chr4_1071236_1071968 chr4_1071136_1071235;chr4_1072055_1072059 0.00 0.00 0.00 8.11 11.11 0.00 0.00 5.88 2.50 0.00 0.00 3.33 0.00 0.00 0.00 2.50 0.00 0.00 5.00 3.70 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 11.11 0.00 4.17 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 6.67 0.00 0.00 0.00 0.00 4.76 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG42533,F_chr2L_7476906_7476978 chr2L - chr2L_7478784_7478850 chr2L_7478793_7478850 chr2L_7478851_7480323;chr2L_7477242_7478783 85.71 83.33 71.43 73.91 88.89 88.89 84.00 80.00 84.00 90.00 NA 80.00 90.91 80.00 90.91 68.75 100.00 85.71 87.50 86.49 87.50 93.75 80.95 86.67 87.50 87.50 86.67 72.73 85.71 73.33 93.75 NA 90.91 68.42 87.50 76.47 84.21 100.00 81.25 74.07 NA 83.87 90.00 81.25 NA 88.89 NA 81.82 86.21 100.00 81.25 72.73 NA NA 77.78 88.89 NA 92.31 K jcn_only_AA Txl chr3L + chr3L_5759476_5759562 chr3L_5759476_5759532 chr3L_5759407_5759475;chr3L_5759563_5759627 100.00 100.00 100.00 100.00 100.00 99.42 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.37 99.21 99.13 100.00 99.53 100.00 100.00 99.46 99.42 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.43 100.00 99.51 99.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG12825 chr2R + chr2R_3676864_3676925 chr2R_3676863_3676864;chr2R_3676925_3676926 chr2R_3676734_3676863;chr2R_3676926_3677005 20.00 NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor tral,I_chr3L_12511355_12511540,I_chr3L_12512171_12512251 chr3L + chr3L_12511325_12511537 chr3L_12511355_12511537 chr3L_12511538_12511767;chr3L_12511255_12511324 73.79 73.38 80.92 67.01 78.76 79.51 72.44 75.47 78.37 62.18 78.57 81.32 78.45 86.08 73.79 86.07 81.18 76.67 81.65 80.56 80.99 61.76 72.93 71.26 79.23 81.98 73.24 69.72 79.58 67.74 74.55 75.61 75.51 72.37 72.27 66.89 69.37 66.44 70.97 48.72 74.16 79.84 72.09 64.67 68.06 64.20 69.59 74.05 79.48 62.79 71.71 72.73 74.71 71.94 80.14 72.66 72.78 76.19 K alternative_donor CG2698,I_chr3R_3828169_3828941,I_chr3R_3828880_3828941,I_chr3R_3829483_3829715,I_chr3R_3830586_3830981 chr3R + chr3R_3828880_3828941 chr3R_3828882_3828941 chr3R_3828942_3829007;chr3R_3828813_3828879 94.87 92.31 85.71 95.65 90.91 100.00 95.45 94.12 100.00 NA 100.00 94.44 87.50 88.89 88.89 100.00 NA 100.00 90.00 93.10 100.00 89.47 95.83 92.31 90.91 100.00 100.00 NA 93.75 100.00 87.50 NA NA 86.36 100.00 94.12 93.33 100.00 92.86 96.15 90.91 100.00 87.50 96.43 100.00 100.00 90.91 100.00 95.00 94.74 86.67 100.00 NA NA 100.00 100.00 90.00 100.00 K intron_retention unc-104,I_chr2R_12643956_12644069,I_chr2R_12643956_12644305,RI_chr2R_12650846_12659758 chr2R - chr2R_12643956_12644060 chr2R_12643955_12643956;chr2R_12644060_12644061 chr2R_12643856_12643955;chr2R_12644061_12644158 0.00 NA 0.00 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 0.00 NA 34.62 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K jcn_only_AA CG11337,I_chr3R_27230306_27230374,RI_chr3R_27230320_27230374 chr3R - chr3R_27230320_27230374;chr3R_27230327_27230374 chr3R_27230306_27230374 chr3R_27230375_27230410;chr3R_27230220_27230305 56.00 NA NA 41.67 NA NA NA 56.00 62.07 NA NA 73.08 NA NA NA 56.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 47.62 NA NA NA NA NA NA NA 53.12 NA NA NA NA NA NA 45.00 NA NA NA NA NA 65.00 NA NA NA K intron_retention Nedd4,I_chr3L_17532828_17532882,I_chr3L_17532828_17533787,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17532837_17533790 chr3L_17532836_17532837;chr3L_17533790_17533791 chr3L_17532667_17532836;chr3L_17533791_17533887 2.54 3.23 2.08 10.53 1.32 2.17 10.00 0.00 2.29 3.61 3.85 4.08 0.00 4.48 2.80 2.78 3.28 1.82 1.47 2.44 6.06 15.29 1.12 2.54 1.94 1.16 3.25 3.28 4.49 5.32 1.92 2.00 2.06 2.16 2.56 0.00 3.27 2.21 2.12 4.05 4.35 2.44 0.00 1.82 4.11 3.03 3.51 4.23 0.00 2.63 0.00 2.38 1.92 2.56 2.00 0.00 3.64 3.12 K jcn_only_AD RpL28,RI_chr3L_3221710_3221877,snoRNA:Me28S-C3351 chr3L - chr3L_3221710_3221881 chr3L_3221710_3221877 chr3L_3221610_3221709;chr3L_3221882_3221977 0.04 0.04 0.00 0.05 0.08 0.04 0.04 0.02 0.01 0.03 0.00 0.05 0.00 0.02 0.01 0.04 0.09 0.01 0.03 0.02 0.03 0.08 0.05 0.04 0.09 0.02 0.11 0.09 0.12 0.10 0.48 0.11 0.04 0.07 0.03 0.10 0.02 0.07 0.06 0.06 0.03 0.04 0.02 0.09 0.02 0.06 0.02 0.06 0.10 0.03 0.04 0.10 0.02 0.07 0.03 0.06 0.09 0.05 K intron_retention CG6569,RI_chr3R_17693077_17693126,I_chr3R_17694702_17694760 chr3R - chr3R_17692987_17693126 chr3R_17692986_17692987;chr3R_17693126_17693127 chr3R_17692977_17692986;chr3R_17693127_17693226 5.88 0.00 NA NA NA NA 13.79 0.00 6.25 NA NA NA NA NA NA 5.88 NA 0.00 NA 7.41 NA 16.67 6.67 NA NA NA NA 9.38 23.08 NA 2.00 NA NA NA NA NA 0.00 NA 11.76 NA NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention CG32702,C_chrX_9453782_9453856,I_chrX_9468866_9473514 chrX - chrX_9463424_9463488 chrX_9463423_9463424;chrX_9463488_9463489 chrX_9463268_9463423;chrX_9463489_9463534 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention scu,RhoGAP16F chrX + chrX_17990655_17990723 chrX_17990654_17990655;chrX_17990723_17990724 chrX_17990549_17990654;chrX_17990724_17990906 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.93 0.00 0.00 1.03 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 2.15 0.00 0.00 0.00 1.24 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 2.41 0.00 0.00 0.00 1.11 1.43 1.99 0.00 0.85 1.35 0.00 0.00 0.00 1.25 0.00 0.00 K jcn_only_AA lwr,RI_chr2L_542347_542429 chr2L - chr2L_542347_542429;chr2L_542380_542429 chr2L_542351_542429 chr2L_542430_542529;chr2L_542247_542346 96.50 96.36 96.72 96.10 96.12 97.62 94.94 96.31 96.65 96.93 97.37 95.69 93.79 96.91 96.12 93.95 96.69 97.93 98.40 95.95 98.06 95.85 94.94 97.75 100.00 95.69 98.48 97.25 96.25 98.01 97.87 95.77 96.48 96.58 96.84 93.98 97.05 97.00 95.80 95.64 97.11 95.83 96.50 98.60 95.17 94.86 97.84 97.71 95.77 95.73 95.24 97.53 98.62 97.99 94.37 96.93 94.85 94.17 K intron_retention RpL17,I_chrX_6637182_6638207,RI_chrX_6637182_6637528,I_chrX_6637182_6637973,snoRNA:Psi28S-1232 chrX - chrX_6637182_6638141 chrX_6637181_6637182;chrX_6638141_6638142 chrX_6637093_6637181;chrX_6638142_6638154 0.44 0.00 0.00 3.17 0.00 3.70 2.67 3.23 1.98 NA 3.28 0.00 0.00 2.13 3.64 4.35 0.00 0.00 0.00 0.00 4.26 4.44 4.35 4.17 4.65 2.60 10.00 15.79 3.61 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 1.52 0.00 9.09 0.88 1.85 5.13 0.00 0.00 0.00 4.35 5.36 0.00 0.00 0.00 0.00 0.00 3.39 1.89 0.00 0.00 K intron_retention Adar,I_chrX_1668256_1682696,I_chrX_1674594_1674717 chrX + chrX_1673403_1674094 chrX_1673402_1673403;chrX_1674094_1674095 chrX_1673123_1673402;chrX_1674095_1674277 13.33 20.59 15.15 12.50 13.64 10.53 14.63 15.69 19.05 NA 4.35 15.56 15.38 23.08 7.41 22.64 13.33 5.26 4.76 12.24 11.11 5.88 9.68 8.00 10.53 3.85 15.15 NA NA NA 8.11 NA NA 14.29 21.05 46.67 7.41 NA 0.00 41.94 NA 11.29 12.50 20.00 NA 22.22 0.00 NA 14.29 19.05 0.00 6.67 NA 13.33 13.79 11.11 13.64 14.29 K jcn_only_AD l(1)G0196,I_chrX_21900456_21904601 chrX + chrX_21907939_21908943 chrX_21908018_21908943 chrX_21908944_21909468;chrX_21907441_21907938 100.00 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA K intron_retention CG7082,RI_chr2L_2224527_2224586,I_chr2L_2229179_2229265 chr2L + chr2L_2224686_2224743 chr2L_2224685_2224686;chr2L_2224743_2224744 chr2L_2224587_2224685;chr2L_2224744_2225357 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.82 0.00 8.57 7.14 11.11 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD mys,I_chrX_7958795_7961094 chrX + chrX_7955904_7957872;chrX_7955908_7957872;chrX_7955914_7957872;chrX_7955759_7957872;chrX_7955901_7957872;chrX_7956125_7957872;chrX_7955967_7957872 chrX_7956114_7957872 chrX_7957873_7958492;chrX_7955741_7955758 4.28 6.12 2.26 7.78 1.10 2.94 2.90 2.61 2.25 2.74 3.08 3.76 6.15 4.12 3.66 4.75 1.40 12.95 2.50 2.78 2.69 7.39 6.28 3.72 6.72 4.08 7.78 7.59 7.47 4.57 2.52 6.25 4.42 2.33 5.71 11.32 3.77 3.79 6.31 4.95 13.56 2.12 2.63 6.12 4.02 5.39 2.46 6.62 3.58 7.59 4.49 6.98 5.22 8.62 4.13 10.23 4.28 4.22 K cassette itp chr2R + chr2R_20443095_20445552 chr2R_20443095_20443806;chr2R_20445223_20445552 chr2R_20443807_20445222 chr2R_20442877_20443094;chr2R_20445553_20446461 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG13344 chr2R + chr2R_9749741_9749802 chr2R_9749741_9749799 chr2R_9749738_9749740;chr2R_9749803_9750933 0.00 NA 5.00 NA NA NA 0.00 NA 0.00 NA NA 0.00 NA 5.00 NA 0.00 NA NA NA 0.00 4.76 NA 0.00 NA NA NA NA NA NA 3.85 NA 0.00 4.35 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 3.03 NA NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention CG42588 chr3L + chr3L_12811626_12811681 chr3L_12811625_12811626;chr3L_12811681_12811682 chr3L_12810479_12811625;chr3L_12811682_12812337 35.71 NA NA 47.37 NA NA 25.00 40.00 22.22 NA NA 54.55 NA NA NA 46.15 NA NA NA 36.84 NA NA NA NA NA NA 38.46 NA NA NA 60.00 NA 21.43 33.33 NA NA NA NA NA 28.57 NA 28.57 NA NA NA NA NA 35.71 NA NA NA NA NA NA 30.77 NA NA NA K intron_retention CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806425_22807258 chr3R_22806424_22806425;chr3R_22807258_22807259 chr3R_22806325_22806424;chr3R_22807259_22807358 93.10 94.59 94.03 95.04 96.55 92.86 93.94 90.23 90.65 91.67 91.67 94.44 88.89 88.71 92.94 89.93 93.10 91.67 91.95 84.11 90.91 89.66 90.48 97.06 96.55 83.58 100.00 100.00 94.44 73.91 89.39 90.62 93.33 93.85 95.24 91.67 92.86 91.67 96.15 95.24 96.30 91.79 89.83 93.33 95.24 95.83 96.67 96.55 94.59 96.00 94.44 92.59 88.89 89.29 85.71 94.29 96.15 97.73 K cassette SF1 chr3R + chr3R_13367524_13369221 chr3R_13367524_13368136;chr3R_13368213_13369221 chr3R_13368137_13368212 chr3R_13367424_13367523;chr3R_13369222_13369374 88.89 89.13 85.71 91.11 93.94 97.14 87.50 96.15 95.52 100.00 90.91 90.91 80.00 94.29 89.13 88.57 96.43 96.88 100.00 85.94 93.33 76.27 89.86 73.68 88.57 96.77 82.76 90.91 88.89 80.39 81.25 73.17 75.38 92.31 90.00 80.39 80.85 76.92 86.27 83.56 79.31 96.00 90.62 86.27 100.00 86.67 82.35 86.67 98.82 78.87 78.75 82.50 92.00 80.39 95.83 86.54 93.18 89.47 K alternative_acceptor Synd chr3R + chr3R_16664346_16664400 chr3R_16664346_16664397 chr3R_16664235_16664345;chr3R_16664401_16664609 38.37 45.57 35.11 38.53 34.29 33.87 42.47 39.08 36.60 29.27 39.06 40.16 36.36 43.40 38.57 44.30 34.38 39.02 47.69 34.32 49.09 41.94 33.85 34.78 36.73 41.94 36.56 43.84 36.07 40.62 39.34 38.89 34.78 38.46 36.51 35.38 35.34 38.37 34.82 38.79 35.29 38.35 38.78 34.15 43.24 41.98 35.35 33.73 40.65 40.00 36.79 36.73 35.37 49.23 35.71 33.77 41.94 45.24 K jcn_only_AA Dsor1,chrX_9141950_9142262.0,chrX_9142356_9142574.0 chrX + chrX_9141942_9142583 chrX_9141942_9142574 chrX_9141376_9141941;chrX_9142584_9143214 86.11 85.29 NA NA NA 86.36 NA 93.10 86.11 75.00 NA 88.00 NA NA NA NA NA NA NA 75.61 NA 85.37 82.00 92.59 NA NA 83.33 NA 95.45 80.00 NA NA NA NA NA NA 84.78 84.00 96.15 NA NA 88.24 NA 83.33 NA NA 96.43 NA 88.57 82.50 90.91 85.00 86.96 90.48 80.00 86.21 NA NA K alternative_acceptor CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_155591_155927,I_chr4_157794_157864 chr4 + chr4_155591_157504 chr4_155591_155927 chr4_155499_155590;chr4_157505_157604 8.83 11.76 8.33 13.16 11.11 5.26 8.77 9.38 14.89 NA 11.11 7.55 20.00 12.00 4.17 10.29 9.09 5.56 6.98 11.63 6.67 16.67 5.56 8.33 8.33 3.45 14.29 20.00 16.67 12.50 5.13 NA 12.50 8.47 7.69 10.00 7.69 0.00 NA 7.14 NA 8.89 9.52 4.35 NA 14.29 NA 5.56 7.35 20.00 14.29 8.33 10.00 NA 7.41 NA NA 6.67 K intron_retention shep,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5155732_5156066 chr3L_5155731_5155732;chr3L_5156066_5156067 chr3L_5155725_5155731;chr3L_5156067_5156229 15.38 NA NA 9.30 NA 21.43 15.79 15.79 19.35 NA NA 23.81 33.33 NA NA 11.76 NA NA 14.29 19.35 NA NA NA NA NA NA NA NA 12.00 0.00 NA NA 23.81 14.29 NA 15.00 NA NA NA 26.32 0.00 15.00 NA NA 6.67 NA NA NA 16.67 NA 20.00 NA NA NA 15.38 NA NA 5.88 K alternative_acceptor CG7519 chr3L + chr3L_21486456_21486546 chr3L_21486456_21486519 chr3L_21486348_21486455;chr3L_21486547_21487010 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 95.83 100.00 100.00 97.56 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 95.00 96.43 100.00 96.97 97.83 100.00 100.00 100.00 100.00 97.37 100.00 97.22 100.00 96.15 100.00 97.87 100.00 95.83 100.00 98.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.36 99.06 K intron_retention CG9147,I_chr2L_6066313_6066378 chr2L + chr2L_6066313_6066368 chr2L_6066312_6066313;chr2L_6066368_6066369 chr2L_6066270_6066312;chr2L_6066369_6067235 0.00 NA NA 0.00 NA 0.00 NA 0.00 5.00 NA NA 0.00 NA NA NA NA NA NA NA 3.85 NA 0.00 4.55 0.00 NA NA 22.22 NA NA NA 0.00 NA NA 0.00 NA 5.56 NA NA 0.00 4.76 NA 0.00 NA NA NA 7.69 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA K intron_retention CG12582 chr3R + chr3R_23024_23136 chr3R_23023_23024;chr3R_23136_23137 chr3R_22977_23023;chr3R_23137_23284 77.05 73.33 70.00 76.06 74.19 72.73 75.76 68.00 68.42 66.67 70.97 79.57 73.33 77.05 77.78 78.49 77.50 73.47 67.74 79.23 62.16 67.31 77.63 80.39 60.00 82.69 88.00 83.33 85.19 74.19 78.82 77.78 82.61 74.19 81.40 90.57 54.55 75.00 70.27 75.76 92.00 81.52 88.24 81.08 73.91 87.50 76.32 90.00 79.84 76.00 80.30 77.50 77.50 81.82 76.25 71.43 72.50 83.33 K intron_retention MED24 chr3L + chr3L_8187933_8187989 chr3L_8187932_8187933;chr3L_8187989_8187990 chr3L_8187572_8187932;chr3L_8187990_8188793 0.00 NA 8.33 3.57 NA NA 0.00 0.00 2.94 NA NA 0.00 0.00 NA NA 6.90 NA NA 0.00 2.38 NA 0.00 0.00 0.00 0.00 NA 12.00 28.57 NA NA 5.88 NA NA 6.90 0.00 4.35 0.00 0.00 0.00 4.35 NA 0.00 NA 0.00 0.00 0.00 0.00 20.00 0.00 0.00 0.00 0.00 0.00 NA 3.85 0.00 5.26 5.88 N multi_cassette Hr78,I_chr3L_21490089_21490390,CG33214 chr3L - chr3L_21488969_21490390 chr3L_21488969_21489520;chr3L_21489842_21489919;chr3L_21489978_21490390 chr3L_21489521_21489841;chr3L_21489920_21489977 chr3L_21488699_21488968;chr3L_21490391_21490490 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N intron_retention cno,I_chr3R_999718_999986,I_chr3R_999737_999777,RI_chr3R_1002318_1003015 chr3R - chr3R_1002013_1002087 chr3R_1002012_1002013;chr3R_1002087_1002088 chr3R_999987_1002012;chr3R_1002088_1002104 5.26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K mutually_exclusive PhKgamma,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11592631_11594653,chrX_11595165_11597322 chrX_11592631_11593355,chrX_11593440_11597322 chrX_11594654_11595164 chrX_11593356_11593439 chrX_11592533_11592630;chrX_11597323_11597422 0.00 0.00 4.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 2.22 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 1.89 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 K cassette S6k,I_chr3L_5800361_5803389,RI_chr3L_5801924_5803389 chr3L - chr3L_5800361_5803389 chr3L_5800361_5801047;chr3L_5801089_5803389 chr3L_5801048_5801088 chr3L_5800311_5800360;chr3L_5803390_5803489 99.10 100.00 99.16 97.01 99.14 98.29 97.32 100.00 99.66 98.51 98.96 98.77 98.72 99.16 99.19 99.37 99.07 100.00 100.00 98.60 99.02 93.33 97.14 100.00 98.57 99.07 98.97 98.55 100.00 100.00 99.32 98.46 99.15 98.92 98.57 93.83 99.44 99.10 98.78 100.00 98.48 99.62 100.00 100.00 98.88 100.00 100.00 99.31 98.68 98.28 99.23 98.63 100.00 100.00 99.41 100.00 98.75 99.09 K jcn_only_AD Qm,E_chr3L_23087825_23087922,RI_chr3L_23087947_23088093 chr3L - chr3L_23087947_23088093 chr3L_23087947_23088005 chr3L_23087923_23087946;chr3L_23088094_23088193 99.79 99.82 99.81 99.92 99.55 99.70 99.81 99.79 99.78 99.56 99.72 99.83 99.78 99.80 99.86 99.79 99.76 99.81 99.88 99.79 99.69 99.77 99.71 99.88 99.65 99.74 99.86 99.67 99.34 99.91 99.75 99.61 99.78 99.78 99.91 99.86 99.78 99.84 99.84 99.86 99.44 99.75 99.70 99.89 99.50 99.84 99.87 99.83 99.89 99.74 99.92 99.87 99.86 99.73 99.87 99.80 99.81 99.75 K intron_retention wfs1 chr3R - chr3R_18515740_18515796 chr3R_18515739_18515740;chr3R_18515796_18515797 chr3R_18514175_18515739;chr3R_18515797_18515895 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 K intron_retention ATPCL,RFI_chr2R_11883823_11884399,I_chr2R_11887476_11888411 chr2R - chr2R_11885758_11887309 chr2R_11885757_11885758;chr2R_11887309_11887310 chr2R_11885572_11885757;chr2R_11887310_11887475 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Ant2,sesB chrX - chrX_10676714_10678383;chrX_10676714_10680838 chrX_10676714_10676809;chrX_10676923_10680838,chrX_10676923_10678383 chrX_10676810_10676922 chrX_10676413_10676713;chrX_10680839_10680913 1.31 1.45 1.27 1.81 1.03 1.49 1.06 2.22 1.71 2.21 1.10 1.21 2.42 2.07 1.22 1.13 1.03 6.67 1.65 1.93 1.12 2.97 0.60 0.84 0.87 1.38 1.44 2.65 1.06 1.83 1.49 2.22 0.56 2.68 1.31 2.76 1.58 1.52 1.29 1.72 1.01 1.26 1.10 1.50 5.88 0.82 1.29 3.57 1.21 0.35 0.82 0.47 0.39 1.12 3.04 0.97 0.21 1.71 K jcn_only_AD I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10065652_10065776;chr2R_10065709_10065776 chr2R_10065706_10065776 chr2R_10065777_10066101;chr2R_10065603_10065651 69.40 73.91 69.52 69.42 69.59 70.63 66.16 66.35 70.03 74.63 73.29 67.18 74.44 68.66 68.75 67.24 71.43 66.93 68.92 70.33 64.90 75.00 70.65 68.70 60.81 73.25 69.57 64.29 69.75 70.59 66.67 78.10 67.86 70.97 75.32 68.93 70.10 75.80 66.76 65.06 73.64 66.87 66.22 69.35 67.52 69.40 67.11 72.92 63.64 66.49 68.77 71.51 71.43 57.14 75.42 63.25 68.47 76.28 K intron_retention None chrU + chrU_1183510_1184060 chrU_1183509_1183510;chrU_1184060_1184061 90.48 91.30 92.31 91.67 90.91 92.86 91.67 89.74 98.08 92.86 90.48 91.84 88.00 95.00 95.45 86.49 84.21 88.24 100.00 91.49 94.44 100.00 86.67 80.77 78.95 81.82 88.24 93.33 100.00 82.61 57.58 95.00 94.74 94.12 77.78 73.68 77.27 93.33 94.12 90.62 90.48 92.11 88.24 88.46 93.33 73.53 77.42 91.18 89.47 74.29 87.88 79.17 93.33 85.00 87.10 88.00 90.00 96.97 K intron_retention CG5181 chr2L - chr2L_7409510_7409572 chr2L_7409509_7409510;chr2L_7409572_7409573 chr2L_7408517_7409509;chr2L_7409573_7409812 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG9795,EI_chr3R_145575_147566,RI_chr3R_145613_145675 chr3R + chr3R_145579_147566 chr3R_145613_147566 chr3R_147567_147666;chr3R_145513_145578 89.83 91.18 87.50 87.18 NA 96.77 86.49 88.10 91.04 NA NA 92.73 82.76 82.61 93.18 85.37 92.59 NA 85.29 89.13 NA NA 86.44 88.00 88.89 86.21 80.70 NA NA NA 93.75 92.31 82.61 93.88 91.30 NA 96.67 88.89 86.21 91.67 NA 90.00 89.66 96.67 71.43 93.33 87.88 95.24 88.89 90.38 86.15 92.86 95.65 NA 92.50 92.00 100.00 NA K intron_retention Ranbp21,I_chrX_19545347_19545435,CG14223 chrX - chrX_19545351_19545435 chrX_19545350_19545351;chrX_19545435_19545436 chrX_19540612_19545350;chrX_19545436_19545535 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.80 0.00 0.00 0.00 0.00 0.00 2.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 K intron_retention CG6364,I_chr3R_20116610_20116825 chr3R + chr3R_20118453_20118559 chr3R_20118452_20118453;chr3R_20118559_20118560 chr3R_20118322_20118452;chr3R_20118560_20118691 0.00 NA NA 6.67 NA NA NA NA 5.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 0.00 NA 0.00 NA NA 0.00 8.33 0.00 NA 0.00 0.00 NA NA NA NA NA NA 6.67 10.53 K jcn_only_AA I_chrX_1757755_1757801,CG14817,I_chrX_1770939_1771001,RI_chrX_1770945_1771037,RI_chrX_1773382_1773444,trr,I_chrX_1793073_1794406,RI_chrX_1795648_1795745 chrX - chrX_1770939_1771001 chrX_1770945_1771001 chrX_1771002_1771101;chrX_1770845_1770938 100.00 99.24 99.57 99.59 100.00 100.00 100.00 99.62 100.00 100.00 100.00 100.00 99.45 100.00 100.00 100.00 100.00 100.00 100.00 99.66 99.57 100.00 99.70 99.54 100.00 100.00 99.74 99.38 99.51 100.00 100.00 100.00 100.00 100.00 98.98 100.00 100.00 100.00 99.82 99.72 99.57 99.76 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.40 99.76 100.00 100.00 100.00 99.48 99.65 N alternative_donor Lag1,RI_chrX_6153758_6153930,I_chrX_6153758_6155077,RI_chrX_6153758_6161036,I_chrX_6160907_6161036 chrX - chrX_6153758_6155077;chrX_6153758_6154631;chrX_6153758_6153930;chrX_6153758_6161036;chrX_6153758_6154193;chrX_6153758_6160439 chrX_6153758_6154358 chrX_6153658_6153757;chrX_6161037_6161136 0.46 0.82 0.42 0.29 0.56 0.52 0.30 0.27 0.19 0.64 0.49 0.25 0.46 0.48 0.42 1.67 0.51 0.46 0.42 0.19 0.46 0.37 0.29 0.32 1.04 0.52 2.21 0.50 0.53 0.37 2.76 1.05 0.27 2.12 0.47 0.46 0.32 0.88 0.36 1.73 0.43 0.22 0.51 0.39 0.49 0.34 0.41 0.31 1.63 0.42 0.32 0.59 3.57 0.56 0.40 0.96 0.74 0.61 K multi_cassette bip2,RI_chr4_481674_482028,RI_chr4_481674_487126,RI_chr4_482358_482702,RI_chr4_483128_487126,RI_chr4_483144_483680,RI_chr4_486609_487126 chr4 - chr4_481674_487126 chr4_481674_482130;chr4_482955_483013;chr4_483128_483680;chr4_485355_485422;chr4_485942_487126 chr4_482131_482954;chr4_483014_483127;chr4_483681_485354;chr4_485423_485941 chr4_481574_481673;chr4_487127_487226 100.00 87.50 100.00 92.31 83.33 100.00 100.00 100.00 96.00 100.00 100.00 88.89 100.00 100.00 90.00 86.36 90.91 80.00 92.86 88.24 100.00 100.00 100.00 87.50 100.00 100.00 87.50 100.00 80.00 100.00 75.00 100.00 80.00 95.45 100.00 100.00 100.00 100.00 100.00 81.82 80.00 100.00 90.91 100.00 100.00 100.00 85.71 100.00 100.00 100.00 91.67 83.33 80.00 100.00 100.00 100.00 75.00 100.00 K alternative_acceptor CG9422,I_chr2R_2584435_2585553 chr2R + chr2R_2579331_2579393 chr2R_2579331_2579386 chr2R_2579262_2579330;chr2R_2579394_2579436 88.24 87.50 100.00 NA 87.50 100.00 100.00 92.86 86.67 NA NA 90.00 NA NA NA 93.75 NA NA NA 92.86 NA NA 81.82 90.91 NA 88.89 83.33 NA NA NA 78.57 81.82 85.71 92.31 NA 77.78 88.89 88.89 90.91 86.67 87.50 93.33 NA NA 100.00 88.24 73.33 75.00 88.24 88.24 76.47 88.89 92.86 81.82 100.00 87.50 91.30 86.36 K alternative_donor CaMKI,I_chr4_466377_467256,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_466912_467256;chr4_466816_467256;chr4_466858_467256;chr4_466798_467256;chr4_466896_467256 chr4_467113_467256 chr4_467257_467272;chr4_466792_466797 50.00 66.67 33.33 30.00 NA 50.00 46.15 40.00 35.71 NA NA 37.50 66.67 50.00 66.67 50.00 33.33 66.67 50.00 60.00 NA NA 66.67 NA 50.00 NA NA NA NA NA 40.00 NA NA 50.00 NA NA NA NA NA NA NA 37.50 33.33 NA NA NA NA NA 36.36 NA NA 60.00 NA NA 66.67 NA NA NA K intron_retention CG32626 chrX - chrX_13725312_13725372 chrX_13725311_13725312;chrX_13725372_13725373 chrX_13725201_13725311;chrX_13725373_13725667 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 K jcn_only_AD Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3295176;chr2R_3294566_3295244;chr2R_3294566_3294634;chr2R_3294566_3294638;chr2R_3294566_3295280;chr2R_3294566_3294642;chr2R_3294566_3294714 chr2R_3294566_3294636 chr2R_3294491_3294565;chr2R_3295281_3295302 5.97 0.00 6.25 0.00 NA 0.00 5.71 5.88 6.10 NA 6.06 1.85 4.00 0.00 12.82 6.90 9.52 15.00 3.85 1.49 6.67 12.00 5.00 0.00 3.12 7.41 0.00 6.45 9.38 6.25 11.43 0.00 7.58 7.50 NA NA 0.00 4.55 4.88 9.09 30.77 11.32 4.55 6.25 12.50 19.05 0.00 11.90 7.46 4.55 3.70 0.00 8.57 NA 0.00 4.17 8.70 3.57 K intron_retention CG42533,F_chr2L_7476906_7476978 chr2L - chr2L_7480324_7480560 chr2L_7480323_7480324;chr2L_7480560_7480561 chr2L_7478851_7480323;chr2L_7480561_7480896 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA dom,I_chr2R_17217595_17218598,I_chr2R_17228865_17228924 chr2R + chr2R_17228126_17228198 chr2R_17228126_17228188 chr2R_17225030_17228125;chr2R_17228199_17228581 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.84 100.00 100.00 98.75 100.00 100.00 99.11 100.00 100.00 100.00 100.00 100.00 K mutually_exclusive CG10103,noncoding_10997 chr3L - chr3L_6747594_6748172,chr3L_6748224_6748519 chr3L_6747594_6747844,chr3L_6747908_6748519 chr3L_6748173_6748223 chr3L_6747845_6747907 chr3L_6747493_6747593;chr3L_6748520_6749258 48.96 50.00 36.96 50.00 57.14 50.00 16.67 54.05 49.12 18.75 43.33 43.24 55.00 45.00 40.00 45.95 44.00 51.52 50.00 47.76 56.00 61.62 48.65 59.46 40.74 40.00 53.66 21.21 50.00 46.51 56.82 47.69 46.53 46.34 48.28 69.23 52.00 50.00 52.00 50.49 42.86 56.94 45.45 41.67 37.35 48.96 50.00 41.67 52.63 47.14 56.82 47.83 48.15 53.49 47.37 61.90 54.55 52.00 N alternative_acceptor CG1416,I_chr2L_21758100_21758179,I_chr2L_21758143_21758183,I_chr2L_21758143_21758209 chr2L + chr2L_21758143_21758201;chr2L_21758143_21758209;chr2L_21758143_21758205 chr2L_21758143_21758183 chr2L_21758116_21758142;chr2L_21758210_21758279 25.22 24.79 23.57 27.33 23.38 25.00 26.90 24.39 23.39 24.10 26.09 24.42 26.17 24.40 24.76 25.37 22.62 22.14 25.35 24.52 25.24 24.18 28.00 23.81 27.45 26.67 28.75 27.95 28.67 27.27 24.37 25.58 26.62 23.85 27.15 33.33 24.53 23.96 22.63 20.51 27.68 25.49 26.39 25.00 22.83 25.70 23.78 27.64 24.40 23.93 26.01 25.22 25.93 26.67 22.67 25.26 24.78 25.41 K intron_retention CG9008 chr2L - chr2L_13775048_13775254 chr2L_13775047_13775048;chr2L_13775254_13775255 chr2L_13774837_13775047;chr2L_13775255_13775406 43.33 42.86 31.25 50.00 NA 29.41 NA 43.75 47.83 36.36 NA 46.15 NA NA 33.33 NA 46.15 NA 64.71 52.00 NA 68.75 56.25 NA NA NA NA NA 45.45 NA 35.71 NA 43.75 36.84 35.71 NA 41.18 NA 47.06 44.00 NA 47.06 NA 43.33 39.13 52.63 28.57 73.33 23.08 41.67 30.00 NA 30.77 NA 28.57 53.85 NA 28.57 K intron_retention eIF-3p66,CG16710,CG18754 chr3R + chr3R_19506112_19506233 chr3R_19506111_19506112;chr3R_19506233_19506234 chr3R_19505783_19506111;chr3R_19506234_19506869 0.62 0.00 0.95 0.78 0.00 0.00 1.14 0.00 0.97 0.00 0.00 0.77 0.00 0.00 1.35 0.72 0.61 1.16 0.00 1.02 0.56 1.42 0.66 0.00 0.00 0.00 1.01 0.00 1.00 0.00 1.26 0.00 1.05 0.38 0.65 0.00 0.00 0.00 0.00 1.39 1.18 1.34 0.00 0.75 1.47 0.53 0.00 1.84 0.62 1.13 1.08 0.00 1.21 2.22 0.00 1.32 0.80 0.62 K alternative_acceptor Gs2 chrX + chrX_11318137_11318314;chrX_11318137_11318302 chrX_11318137_11318297 chrX_11318068_11318136;chrX_11318315_11318487 0.00 0.00 0.00 0.00 NA 0.00 8.33 10.00 0.00 7.14 NA 4.00 0.00 NA 0.00 0.00 NA NA 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 4.35 0.00 0.00 0.00 8.33 0.00 0.00 5.26 0.00 0.00 3.85 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 11.11 0.00 NA N cassette TER94 chr2R + chr2R_5878079_5880267 chr2R_5878079_5878164;chr2R_5880202_5880267 chr2R_5878165_5880201 chr2R_5877976_5878078;chr2R_5880268_5880422 100.00 100.00 100.00 98.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette p130CAS chr3L + chr3L_167620_172060 chr3L_167620_168580;chr3L_168851_172060 chr3L_168581_168850 chr3L_167476_167619;chr3L_172061_174510 94.12 98.28 91.84 78.08 97.06 92.86 93.94 98.28 90.32 93.75 80.56 96.88 95.12 94.12 94.44 93.33 100.00 96.88 97.30 100.00 89.19 77.19 95.56 94.94 98.36 97.67 87.67 68.89 85.00 89.86 96.00 92.31 91.57 96.67 90.48 91.18 95.00 96.77 97.96 92.04 89.47 97.73 96.30 92.06 86.15 98.31 92.59 98.70 95.89 92.86 93.33 97.50 94.87 97.96 94.00 94.55 88.24 88.33 K intron_retention CG32795,I_chrX_2677459_2682526,I_chrX_2677729_2677799,I_chrX_2679163_2681784 chrX - chrX_2678180_2678302 chrX_2678179_2678180;chrX_2678302_2678303 chrX_2677800_2678179;chrX_2678303_2678520 0.00 0.00 0.00 0.00 5.56 0.00 5.56 0.00 4.76 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 7.69 0.00 NA 0.00 3.12 NA 0.00 5.56 NA NA 0.00 4.55 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention klett chrX - chrX_21497280_21497339 chrX_21497279_21497280;chrX_21497339_21497340 chrX_21497037_21497279;chrX_21497340_21497917 1.71 2.03 0.00 2.34 0.00 0.88 2.88 2.76 1.36 1.06 1.23 3.55 0.00 0.00 1.45 2.35 0.00 1.71 0.00 1.44 0.94 6.41 2.30 1.27 8.24 5.41 3.97 6.40 4.61 1.55 0.47 4.30 2.45 2.92 1.89 15.83 2.30 1.61 2.12 2.53 7.69 2.20 0.00 1.68 0.92 2.45 1.31 4.21 1.43 1.23 2.07 1.52 1.59 2.34 0.00 0.00 1.20 2.31 K jcn_only_AD CG14117,F_chr3L_13001961_13002035,RI_chr3L_13001978_13002035 chr3L + chr3L_13001974_13002035 chr3L_13001978_13002035 chr3L_13002036_13002127;chr3L_13001878_13001973 10.00 25.00 NA 4.17 NA NA 14.29 NA 21.74 NA NA 4.17 NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA 14.29 NA NA NA NA NA 25.00 10.00 NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA 16.13 10.00 NA NA NA NA NA 0.00 NA NA K intron_retention CG16953,Sep2,I_chr3R_16413180_16413591,RI_chr3R_16413718_16413845 chr3R - chr3R_16413180_16413845 chr3R_16413179_16413180;chr3R_16413845_16413846 chr3R_16413080_16413179;chr3R_16413846_16413945 0.97 0.71 0.94 1.31 0.00 1.04 2.11 0.00 1.26 0.87 0.50 0.97 1.24 0.55 0.00 0.38 0.54 0.00 0.95 1.30 0.53 7.53 1.45 1.31 1.20 0.00 1.79 2.86 1.63 0.87 2.87 0.93 1.18 0.00 1.87 0.71 0.97 1.02 0.77 2.36 1.26 0.55 0.00 0.68 1.49 1.45 1.28 1.18 1.12 1.12 1.03 1.67 0.67 0.67 0.96 0.84 0.18 0.77 K intron_retention Crc,Scm chr3R - chr3R_5455903_5456170 chr3R_5455902_5455903;chr3R_5456170_5456171 chr3R_5455460_5455902;chr3R_5456171_5456199 0.22 0.52 0.00 0.00 0.00 0.27 0.34 0.30 0.11 0.67 0.08 0.20 0.15 0.19 0.13 0.13 0.31 0.18 0.21 0.30 0.18 0.80 0.15 0.06 0.00 0.15 0.24 0.70 0.32 0.31 0.32 0.22 0.23 0.11 0.27 0.23 0.33 0.00 0.16 0.28 0.18 0.27 0.19 0.28 0.42 0.15 0.27 0.52 0.14 0.31 0.28 0.00 0.42 0.21 0.15 0.33 0.08 0.31 K jcn_only_AD CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516706_21517821;chr3L_21516330_21517821;chr3L_21516399_21517821;chr3L_21517168_21517821;chr3L_21516722_21517821;chr3L_21516501_21517821;chr3L_21516918_21517821;chr3L_21516728_21517821 chr3L_21516343_21517821 chr3L_21517822_21517920;chr3L_21516311_21516329 0.00 0.00 8.00 0.00 0.00 0.00 0.00 2.38 0.00 NA NA 2.38 NA 0.00 0.00 0.00 0.00 0.00 NA 1.67 NA 4.00 0.00 4.55 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 2.04 NA 0.00 0.00 0.00 NA 0.00 NA 3.39 4.35 0.00 NA 0.00 4.76 2.38 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K cassette Myo61F,mtacp1,I_chr3L_1330291_1330865,I_chr3L_1330291_1331279,RI_chr3L_1330929_1331041,l(3)02640 chr3L + chr3L_1330291_1331041 chr3L_1330291_1330862;chr3L_1330929_1331041 chr3L_1330863_1330928 chr3L_1330191_1330290;chr3L_1331042_1331054 29.52 28.07 31.99 48.89 29.52 33.44 42.19 34.40 28.57 29.92 34.97 31.46 39.80 31.85 28.35 30.63 31.64 29.38 31.63 30.34 30.95 15.33 29.94 30.08 29.08 33.99 27.20 31.86 43.87 28.90 29.76 23.41 27.12 29.71 31.44 29.80 26.97 26.54 25.40 26.71 40.76 29.34 31.30 19.41 25.34 29.34 24.66 28.31 27.26 28.18 28.19 33.70 21.02 25.93 31.37 25.83 24.35 22.70 K intron_retention CG6199 chr3L - chr3L_11198970_11199055 chr3L_11198969_11198970;chr3L_11199055_11199056 chr3L_11198834_11198969;chr3L_11199056_11199135 92.31 93.33 77.78 96.55 92.31 NA 92.31 87.88 94.74 NA 88.89 100.00 100.00 100.00 100.00 97.37 93.33 91.67 93.33 86.67 71.43 NA 100.00 70.00 NA 87.50 100.00 NA 93.33 100.00 92.31 90.91 65.00 91.67 NA 100.00 100.00 NA 100.00 77.78 90.00 90.32 100.00 87.10 92.31 86.36 NA 90.57 90.32 90.91 100.00 NA 88.89 NA 94.44 90.00 NA 89.19 K intron_retention CG9646 chr2R + chr2R_12938670_12939326 chr2R_12938669_12938670;chr2R_12939326_12939327 chr2R_12938230_12938669;chr2R_12939327_12940649 6.67 0.00 0.00 13.04 0.00 6.25 11.11 13.04 16.67 5.56 NA 0.00 NA 11.11 6.67 8.70 0.00 NA 0.00 12.82 17.65 9.41 2.44 4.76 9.09 25.00 6.52 21.43 9.86 7.32 10.71 7.50 7.94 17.86 0.00 9.09 5.56 3.57 4.55 11.67 7.14 6.45 6.67 3.77 6.67 12.20 7.69 6.25 20.00 8.82 4.17 8.33 0.00 NA 0.00 6.25 0.00 0.00 K jcn_only_AD Galpha49B,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500357_8501071 chr2R_8500390_8501071 chr2R_8501072_8501850;chr2R_8500333_8500356 43.05 NA NA 63.64 NA NA 40.74 35.90 25.00 NA NA 41.18 26.67 33.33 NA 52.08 43.48 NA 47.62 42.86 NA NA 51.52 NA NA NA NA NA NA NA 50.00 NA NA 43.24 NA NA NA NA NA 58.33 NA 54.55 NA 52.00 NA NA NA NA 40.00 NA NA 30.77 NA NA 42.86 NA NA NA N mutually_exclusive RpL3,E_chr3R_7047964_7050565,I_chr3R_7048451_7049116,I_chr3R_7048452_7048540,I_chr3R_7048452_7049579,snoRNA:Me18S-A425,snoRNA:Psi28S-291,E_chr3R_7049697_7049750,I_chr3R_7049970_7050189,snoRNA:Me28S-G2017 chr3R + chr3R_7048452_7049579,chr3R_7049970_7050212 chr3R_7048452_7049116,chr3R_7049253_7050212 chr3R_7049580_7049969 chr3R_7049117_7049252 chr3R_7048352_7048451;chr3R_7050213_7050289 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 60.87 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention crol,I_chr2L_11799403_11802904 chr2L - chr2L_11799403_11800154 chr2L_11799402_11799403;chr2L_11800154_11800155 chr2L_11799303_11799402;chr2L_11800155_11800322 7.44 7.23 7.14 12.04 5.41 7.27 13.00 7.69 10.32 1.92 12.90 19.44 18.99 8.93 7.14 5.13 5.00 6.94 15.00 7.44 15.25 7.69 3.62 4.67 6.38 8.79 9.68 11.90 13.24 10.94 12.31 9.68 0.00 12.15 6.58 7.41 5.88 4.81 5.80 10.28 16.67 8.27 14.29 7.53 4.65 10.42 5.56 11.48 7.63 6.49 6.67 5.41 4.17 4.88 11.11 3.12 6.67 0.00 K intron_retention CG7852,Cct1,Cct2 chr3L + chr3L_1540958_1541655 chr3L_1540957_1540958;chr3L_1541655_1541656 chr3L_1540752_1540957;chr3L_1541656_1541677 90.62 88.46 94.12 94.74 93.75 80.00 77.78 87.50 88.89 77.78 90.91 96.30 100.00 93.33 93.75 100.00 90.00 75.00 80.00 87.50 91.67 97.06 80.00 90.62 95.24 92.31 95.83 96.15 86.67 90.91 92.31 80.95 95.45 100.00 86.36 95.83 90.00 88.89 85.71 85.71 90.91 94.29 81.82 71.43 81.82 88.24 84.00 92.86 95.00 89.47 88.89 85.71 94.44 85.19 94.12 82.14 96.43 92.31 K jcn_only_AD CG5973,I_chr2L_7441485_7443583,I_chr2L_7443388_7443583 chr2L + chr2L_7440963_7443583;chr2L_7440852_7443583;chr2L_7440959_7443583 chr2L_7441757_7443583 chr2L_7443584_7443683;chr2L_7440710_7440851 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Cyp311a1 chrX - chrX_11925229_11925308 chrX_11925250_11925308 chrX_11925309_11925479;chrX_11924872_11925228 88.89 NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention zfh1 chr3R + chr3R_26611664_26611731 chr3R_26611663_26611664;chr3R_26611731_26611732 chr3R_26609665_26611663;chr3R_26611732_26614729 0.70 0.00 0.00 1.50 0.00 0.36 1.22 1.27 0.76 0.00 0.00 1.17 1.56 0.75 1.18 0.33 0.00 0.00 0.00 0.84 0.75 0.72 0.43 0.00 0.00 0.94 2.49 5.66 1.65 0.87 0.00 0.00 0.53 1.47 0.66 1.10 1.04 0.00 0.76 0.72 0.00 0.64 1.53 0.46 0.00 0.00 0.00 0.70 0.84 1.11 2.16 0.90 0.36 0.00 1.02 0.00 0.98 0.28 K intron_retention Pi4KIIalpha chr3R - chr3R_1383812_1383871 chr3R_1383811_1383812;chr3R_1383871_1383872 chr3R_1383699_1383811;chr3R_1383872_1384023 100.00 100.00 100.00 100.00 NA 100.00 100.00 97.44 100.00 100.00 NA 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 96.43 100.00 100.00 100.00 90.91 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 95.83 100.00 100.00 92.31 100.00 100.00 100.00 100.00 K intron_retention Dystrophin chr3R + chr3R_15308374_15309625 chr3R_15308373_15308374;chr3R_15309625_15309626 chr3R_15308286_15308373;chr3R_15309626_15310083 0.00 0.00 4.35 4.76 NA 0.00 0.00 3.12 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.50 NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 K intron_retention TepIV,EI_chr2L_19548696_19549582 chr2L + chr2L_19553294_19553361 chr2L_19553293_19553294;chr2L_19553361_19553362 chr2L_19552956_19553293;chr2L_19553362_19553915 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 2.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9330,RI_chr3L_19580216_19580275 chr3L + chr3L_19581872_19581930 chr3L_19581871_19581872;chr3L_19581930_19581931 chr3L_19581780_19581871;chr3L_19581931_19582173 0.00 1.33 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 2.33 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 1.08 0.00 3.12 0.00 0.00 0.00 13.24 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 K intron_retention CG17724,Kdm4B,seq chr2R - chr2R_9066519_9067092 chr2R_9066518_9066519;chr2R_9067092_9067093 chr2R_9063672_9066518;chr2R_9067093_9067615 23.41 NA NA NA NA NA NA NA 27.78 NA NA NA NA NA NA 19.05 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG15609,I_chr2R_12897700_12897767,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12897679_12897767 chr2R_12897700_12897767 chr2R_12897768_12897834;chr2R_12897600_12897678 1.85 3.30 1.28 2.47 1.56 3.03 1.11 1.09 2.31 1.02 0.00 1.68 1.85 1.75 2.30 5.88 1.54 4.29 0.00 1.24 1.41 1.10 2.82 0.70 2.86 3.23 2.88 2.78 1.14 2.41 1.23 1.52 1.96 2.04 1.47 4.76 2.38 1.94 1.54 3.54 2.63 2.16 1.92 3.09 1.15 1.90 0.92 1.01 1.63 1.39 3.28 1.67 2.53 2.30 0.00 1.04 0.00 3.85 K cassette ps,I_chr3R_5243723_5265067,I_chr3R_5243723_5270765,noncoding_15575,I_chr3R_5245770_5265067,I_chr3R_5245770_5269732,I_chr3R_5258562_5264836,I_chr3R_5269733_5270765 chr3R + chr3R_5245770_5269732;chr3R_5245770_5270765;chr3R_5243723_5270765 chr3R_5245770_5257753,chr3R_5243723_5257753;chr3R_5258562_5269732,chr3R_5258562_5270765 chr3R_5257754_5258561 chr3R_5243705_5243722;chr3R_5270766_5270860 100.00 100.00 100.00 99.65 100.00 99.24 98.72 100.00 100.00 98.86 100.00 100.00 100.00 100.00 99.40 100.00 99.31 99.33 100.00 99.70 100.00 99.41 100.00 100.00 99.20 100.00 99.44 100.00 99.28 99.35 100.00 100.00 100.00 99.64 99.19 100.00 100.00 100.00 99.31 100.00 100.00 99.30 99.34 100.00 97.50 100.00 100.00 99.42 99.67 100.00 100.00 100.00 98.48 97.73 99.45 98.28 98.48 98.89 K alternative_donor RI_chrX_502548_513324,CG13366,I_chrX_508729_508806,I_chrX_509497_513324,I_chrX_509727_511407,I_chrX_509727_511477,noncoding_21186,I_chrX_509834_511407,CRE_chrX_509851_511307,I_chrX_510004_511307,I_chrX_510004_511407,I_chrX_513176_513324,I_chrX_513519_513631 chrX - chrX_509834_511307;chrX_509834_511477;chrX_509834_511407 chrX_509834_511413 chrX_509751_509833;chrX_511478_511507 12.50 NA NA 11.11 NA 25.00 9.09 9.09 20.00 0.00 NA 11.11 NA NA NA 17.65 33.33 25.00 9.09 7.14 NA 20.00 20.00 12.50 20.00 12.50 12.50 NA NA NA 0.00 NA NA 25.00 NA NA 14.29 NA NA NA NA 7.69 0.00 14.29 NA NA NA 20.00 9.09 NA 16.67 NA NA NA 16.67 0.00 NA NA K alternative_acceptor CG3651,I_chr2L_22124217_22124661,I_chr2L_22124698_22124781 chr2L + chr2L_22124217_22124786;chr2L_22124217_22124781 chr2L_22124217_22124661 chr2L_22124117_22124216;chr2L_22124787_22124881 1.16 1.54 3.39 0.00 0.00 0.00 2.27 3.75 0.78 0.00 0.00 1.92 0.00 1.82 0.00 3.30 0.00 0.00 0.00 0.91 2.33 4.76 0.00 0.00 0.00 0.00 1.16 2.22 0.00 0.00 1.52 2.60 0.00 1.11 1.96 0.00 0.00 1.69 0.00 1.57 1.23 0.88 2.56 0.00 2.33 0.88 1.45 1.64 3.16 3.53 1.22 0.00 3.12 0.00 1.37 2.63 2.90 6.12 K intron_retention CG9154 chr2L - chr2L_6070179_6070232 chr2L_6070178_6070179;chr2L_6070232_6070233 chr2L_6069790_6070178;chr2L_6070233_6070392 0.00 0.00 0.00 0.00 NA 0.00 7.41 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.56 0.00 12.50 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention d4 chr2R + chr2R_1182566_1182620 chr2R_1182565_1182566;chr2R_1182620_1182621 chr2R_1182302_1182565;chr2R_1182621_1183461 67.95 NA NA 76.92 NA NA NA 61.54 40.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 88.89 60.00 NA NA NA NA 80.00 NA NA NA NA NA NA 77.78 NA 69.23 NA NA NA NA NA NA 63.64 NA NA NA NA NA NA NA 60.00 66.67 K alternative_donor Edem2 chr2L + chr2L_13195378_13195580 chr2L_13195405_13195580 chr2L_13195581_13195679;chr2L_13195133_13195377 85.19 82.76 86.67 81.08 85.71 81.82 83.33 83.33 83.56 100.00 74.19 88.10 91.30 88.00 80.56 90.00 96.77 82.76 84.38 86.89 88.00 88.89 82.05 91.43 84.00 90.62 87.50 91.67 73.08 81.48 75.68 88.89 75.00 86.00 75.00 82.61 86.67 87.50 84.38 94.12 90.00 81.43 85.19 88.57 77.78 82.35 78.12 75.00 90.38 94.12 81.82 83.33 77.78 91.30 80.00 86.67 86.67 86.36 K cassette Best1,I_chr3R_5991957_5995913,RI_chr3R_5993184_5995905 chr3R - chr3R_5991957_5995913 chr3R_5991957_5992970;chr3R_5993184_5995913 chr3R_5992971_5993183 chr3R_5991857_5991956;chr3R_5995914_5996005 98.00 97.92 97.87 97.73 97.50 100.00 98.70 99.06 98.52 100.00 100.00 99.05 97.78 100.00 98.08 96.00 94.12 100.00 95.95 92.79 100.00 89.71 98.41 97.83 100.00 97.56 100.00 96.55 83.72 98.31 98.75 97.44 98.15 99.12 100.00 98.00 97.37 100.00 100.00 97.98 98.11 96.61 100.00 97.18 97.30 95.60 100.00 96.33 98.35 96.30 96.61 100.00 95.83 100.00 97.26 97.37 97.30 98.67 K alternative_donor Ptp99A,I_chr3R_25302126_25302175 chr3R + chr3R_25302126_25307188 chr3R_25305548_25307188 chr3R_25307189_25307478;chr3R_25302026_25302125 40.00 33.33 37.50 57.14 66.67 66.67 37.50 80.00 62.50 28.57 66.67 62.50 50.00 66.67 66.67 42.86 40.00 50.00 33.33 50.00 100.00 22.22 30.77 42.86 50.00 50.00 42.86 20.00 40.00 22.22 40.00 20.00 33.33 66.67 50.00 33.33 26.67 33.33 30.77 36.36 33.33 50.00 40.00 33.33 25.00 33.33 50.00 20.00 50.00 22.22 25.00 33.33 22.22 100.00 50.00 50.00 25.00 40.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2393243 chrX_2388671_2389073;chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2393243 chrX_2389074_2389271;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2388641_2388670;chrX_2393244_2393291 40.00 NA NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA PRL-1,RI_chr2L_16249092_16250080,I_chr2L_16250028_16250080 chr2L - chr2L_16249722_16250080;chr2L_16249707_16250080;chr2L_16249092_16250080 chr2L_16250028_16250080 chr2L_16250081_16250158;chr2L_16248992_16249091 0.00 0.00 0.00 0.20 0.00 0.00 0.37 0.00 0.00 0.00 0.34 0.36 0.34 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 1.33 0.00 0.35 0.21 0.00 0.72 0.47 0.00 0.18 0.00 0.80 0.00 0.00 0.00 0.55 0.00 0.00 0.74 K multi_cassette cora,I_chr2R_15125277_15130573,I_chr2R_15125940_15130208,I_chr2R_15129291_15129988 chr2R + chr2R_15125940_15130208 chr2R_15125940_15128720;chr2R_15129291_15129678;chr2R_15129901_15130208 chr2R_15128721_15129290;chr2R_15129679_15129900 chr2R_15125887_15125939;chr2R_15130209_15130308 100.00 100.00 100.00 99.79 100.00 100.00 100.00 100.00 100.00 99.64 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.81 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention shrb,I_chr2R_5030742_5030897 chr2R - chr2R_5030742_5031124 chr2R_5030741_5030742;chr2R_5031124_5031125 chr2R_5030642_5030741;chr2R_5031125_5031437 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.74 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG10550 chr3R - chr3R_21133632_21134032;chr3R_21133632_21134036 chr3R_21133632_21133902 chr3R_21133411_21133631;chr3R_21134037_21134116 4.35 NA NA 3.33 NA NA 4.55 0.00 4.35 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.00 NA K intron_retention milt,I_chr2L_7051093_7051366 chr2L + chr2L_7051646_7051759 chr2L_7051645_7051646;chr2L_7051759_7051760 chr2L_7051367_7051645;chr2L_7051760_7053365 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.93 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 1.29 2.12 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG6695 chr3R + chr3R_20483291_20484042;chr3R_20483332_20484042 chr3R_20483336_20484042 chr3R_20484043_20484133;chr3R_20483238_20483290 14.49 15.79 7.41 4.88 12.50 18.18 4.35 16.13 11.94 14.81 NA 17.95 NA 17.39 NA NA 13.04 12.00 NA 6.56 NA 22.09 7.41 23.33 23.08 NA 16.07 16.13 14.29 12.82 30.00 12.82 10.71 5.88 10.81 7.89 9.20 6.38 20.00 17.81 19.30 15.52 NA 21.13 21.21 20.63 14.29 22.81 13.04 14.49 17.24 16.67 9.23 17.91 6.67 14.06 13.79 16.95 K alternative_donor Ptp61F,RI_chr3L_1345162_1345493 chr3L - chr3L_1345162_1345497 chr3L_1345162_1345493 chr3L_1345062_1345161;chr3L_1345498_1345593 0.00 0.00 0.81 0.59 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.57 0.00 0.60 0.00 0.87 0.86 0.00 0.67 0.00 0.00 0.56 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.44 0.55 0.00 0.71 0.00 1.27 0.00 0.00 0.00 0.00 0.00 K alternative_donor Ank,RI_chr4_144049_144406,I_chr4_144066_144410,I_chr4_150069_150423 chr4 - chr4_144049_144410 chr4_144049_144406 chr4_143966_144048;chr4_144411_144506 4.43 5.56 2.70 4.63 4.82 3.64 4.69 3.05 2.81 7.69 2.97 5.35 1.63 4.69 6.96 3.91 3.33 4.04 2.81 3.47 5.56 4.44 3.88 2.13 7.14 6.50 9.78 5.00 11.76 4.41 8.76 6.25 9.09 3.68 7.32 5.00 3.03 4.55 1.67 1.03 9.52 4.48 4.10 0.00 NA 7.50 4.35 3.12 4.20 NA 3.80 1.54 0.00 NA 4.08 4.76 6.45 5.71 K intron_retention Neu3,I_chr3R_10493378_10493462,I_chr3R_10493378_10494080 chr3R - chr3R_10493378_10493462 chr3R_10493377_10493378;chr3R_10493462_10493463 chr3R_10493278_10493377;chr3R_10493463_10493505 58.82 45.45 NA 53.33 NA NA NA 80.00 61.11 NA NA NA NA NA NA 69.23 NA NA NA 46.67 NA 34.48 76.47 53.33 NA NA NA NA NA 71.43 NA NA 33.33 69.23 NA 46.15 33.33 NA NA 58.82 NA 64.29 NA 84.62 NA 53.33 NA 46.67 64.29 53.85 66.67 NA NA NA NA NA NA 75.00 K intron_retention Rrp6,I_chr3R_10711208_10711300 chr3R - chr3R_10709546_10709783 chr3R_10709545_10709546;chr3R_10709783_10709784 chr3R_10708619_10709545;chr3R_10709784_10711188 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 3.85 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 3.23 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 6.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 K intron_retention Nnf1b,I_chr2L_810759_810816,KH1 chr2L + chr2L_811204_811258 chr2L_811203_811204;chr2L_811258_811259 chr2L_811089_811203;chr2L_811259_811421 0.00 0.00 0.00 1.59 0.00 0.00 2.38 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Dpck,EI_chr3R_2912813_2912955 chr3R + chr3R_2908488_2908558 chr3R_2908487_2908488;chr3R_2908558_2908559 chr3R_2908196_2908487;chr3R_2908559_2908984 0.00 5.26 0.00 0.00 0.00 0.00 8.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 20.00 0.00 0.00 0.00 3.70 0.00 15.00 0.00 0.00 0.00 0.00 2.86 4.76 9.09 7.14 10.71 6.06 0.00 2.13 0.00 6.25 2.00 0.00 3.33 5.00 0.00 0.00 0.00 3.45 0.00 6.06 3.92 0.00 0.00 6.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.26 K cassette Tm1,I_chr3R_11126545_11128874 chr3R + chr3R_11126545_11128874 chr3R_11126545_11127345;chr3R_11127409_11128874 chr3R_11127346_11127408 chr3R_11126470_11126544;chr3R_11128875_11128944 100.00 100.00 100.00 99.42 100.00 100.00 100.00 99.50 100.00 100.00 100.00 99.40 98.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 100.00 100.00 99.02 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.88 100.00 K alternative_donor CG7224 chr2L + chr2L_7999176_7999248;chr2L_7999168_7999248;chr2L_7999170_7999248 chr2L_7999174_7999248 chr2L_7999249_7999714;chr2L_7998934_7999167 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Anxb11,I_chrX_16314152_16314405,I_chrX_16314152_16315813 chrX - chrX_16313083_16313236 chrX_16313082_16313083;chrX_16313236_16313237 chrX_16312701_16313082;chrX_16313237_16313351 12.50 13.64 7.41 17.24 13.04 10.00 18.75 13.73 16.39 10.87 2.94 11.36 33.33 13.79 15.15 25.00 11.76 28.26 19.23 19.12 8.70 10.90 15.52 12.50 14.29 6.25 25.00 40.62 17.14 11.11 9.30 8.96 11.34 15.22 18.92 15.79 11.84 10.61 15.52 13.95 10.34 13.11 13.04 12.33 8.94 9.23 10.42 7.37 15.00 10.39 11.11 6.25 10.91 13.04 9.30 12.90 11.54 7.14 K intron_retention CG31689,I_chr2L_2730373_2736310,I_chr2L_2730470_2736310,RI_chr2L_2736137_2736310,I_chr2L_2736230_2736310,I_chr2L_2736431_2737036 chr2L + chr2L_2730893_2736173 chr2L_2730892_2730893;chr2L_2736173_2736174 chr2L_2730838_2730892;chr2L_2736174_2736229 100.00 NA 100.00 100.00 100.00 100.00 93.33 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 92.31 NA NA 100.00 NA NA NA K intron_retention Xrp1,I_chr3R_14741648_14750799,I_chr3R_14750298_14750799 chr3R + chr3R_14741648_14750799 chr3R_14741647_14741648;chr3R_14750799_14750800 chr3R_14741548_14741647;chr3R_14750800_14750899 66.67 NA NA 66.67 NA NA 29.63 NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA 66.67 66.67 16.00 NA NA NA NA NA NA NA NA NA NA NA NA 70.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654157,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15652351_15654499 chrX_15652350_15652351;chrX_15654499_15654500 chrX_15652263_15652350;chrX_15654500_15654599 70.00 88.89 66.67 60.00 NA 69.23 80.00 68.97 74.07 NA NA 70.00 NA 60.00 92.86 67.57 NA 90.00 71.43 69.23 77.78 87.50 83.33 NA NA 76.92 77.78 NA NA NA 61.90 NA 63.64 78.12 70.00 61.11 NA NA 77.78 71.43 NA 85.71 56.25 NA NA 60.00 NA 61.54 77.42 NA 50.00 NA NA NA 81.25 NA 55.56 52.63 K cassette Nedd4,I_chr3L_17534504_17535990,I_chr3L_17535485_17536604,I_chr3L_17536813_17536863 chr3L + chr3L_17535485_17536604 chr3L_17535485_17535650;chr3L_17535913_17536604 chr3L_17535651_17535912 chr3L_17535417_17535484;chr3L_17536605_17536704 80.00 85.71 80.00 80.00 NA NA 85.71 NA 88.89 75.00 83.33 94.44 NA NA NA NA NA NA NA 100.00 NA 60.00 69.23 83.33 83.33 NA 70.00 80.00 66.67 76.92 100.00 62.50 81.25 100.00 71.43 NA 92.31 88.89 90.91 65.22 57.14 77.78 NA 58.82 73.33 66.67 NA 76.92 83.33 66.67 66.67 80.00 80.00 75.00 NA 100.00 NA 80.00 K intron_retention Nplp2,I_chr3L_13349726_13349896 chr3L + chr3L_13349744_13349826 chr3L_13349743_13349744;chr3L_13349826_13349827 chr3L_13349632_13349743;chr3L_13349827_13349946 0.19 0.10 0.19 0.18 0.18 0.23 0.18 0.20 0.14 0.06 0.16 0.20 0.18 0.23 0.24 0.20 0.18 0.20 0.17 0.18 0.19 0.19 0.08 0.12 0.15 0.20 0.25 0.30 0.20 0.10 0.13 0.17 0.31 0.23 0.26 0.25 0.05 0.08 0.11 0.17 0.21 0.25 0.19 0.05 0.28 0.30 0.23 0.15 0.23 0.12 0.13 0.08 0.31 0.30 0.17 0.17 0.26 0.29 K jcn_only_AD Nipped-B,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_616057_616283;chr2R_616057_616318;chr2R_616057_616311 chr2R_616057_617208 chr2R_615957_616056;chr2R_617209_617308 7.89 19.35 12.96 4.55 3.85 7.89 8.33 5.83 8.73 NA 10.71 18.42 7.02 18.75 5.41 10.09 6.90 12.90 5.26 10.00 9.38 3.85 4.29 0.00 1.82 12.50 5.19 2.70 8.89 3.45 7.02 NA 4.00 5.66 2.33 9.62 6.82 3.23 5.88 8.33 NA 15.79 12.12 8.47 NA NA NA 0.00 10.00 NA 13.04 12.82 NA NA 16.13 NA NA NA K alternative_donor CG40191,I_chr2RHet_391475_391828,I_chr2RHet_392279_392824 chr2RHet + chr2RHet_391475_391803 chr2RHet_391479_391803 chr2RHet_391804_391926;chr2RHet_391375_391474 0.76 0.00 0.64 0.45 0.78 0.78 0.51 0.46 0.57 0.00 0.76 1.57 0.93 0.77 1.11 1.20 0.00 0.73 0.65 1.15 2.34 0.00 0.60 1.28 0.80 1.90 0.63 5.38 0.93 0.00 0.66 0.00 0.00 1.42 0.00 0.73 0.70 0.00 0.00 2.09 0.93 0.71 0.00 2.36 1.45 0.69 1.55 0.00 0.72 2.40 1.20 0.85 1.09 0.87 0.59 0.78 2.12 0.83 K intron_retention Hmt-1 chr3R - chr3R_11682676_11683051 chr3R_11682675_11682676;chr3R_11683051_11683052 chr3R_11682360_11682675;chr3R_11683052_11683209 7.58 13.33 5.10 6.74 5.56 7.48 20.00 7.89 8.08 6.19 6.82 6.79 6.82 8.33 5.56 4.92 10.34 8.86 9.52 5.98 7.55 29.20 4.04 8.25 9.72 15.94 20.51 12.28 19.46 9.09 8.40 6.06 13.29 4.71 9.82 10.14 9.38 7.78 7.58 3.18 13.68 5.65 4.65 6.44 5.22 7.19 5.00 6.43 6.67 10.00 8.59 8.51 2.04 9.23 6.06 4.71 11.43 5.59 K alternative_acceptor sxc,I_chr2R_1203985_1205289,I_chr2R_1208121_1213310,I_chr2R_1213177_1213308 chr2R + chr2R_1194785_1194977 chr2R_1194785_1194918 chr2R_1194775_1194784;chr2R_1194978_1195157 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 96.88 100.00 100.00 100.00 NA NA 92.86 100.00 100.00 100.00 K jcn_only_AD CG9135,I_chr2L_6050922_6051505 chr2L + chr2L_6050922_6051616 chr2L_6051068_6051616 chr2L_6051617_6052022;chr2L_6050822_6050921 2.17 NA NA 2.17 0.00 3.45 6.45 0.00 3.12 0.00 5.00 0.00 0.00 NA 2.33 0.00 5.00 0.00 0.00 2.27 NA NA NA NA NA 0.00 NA NA NA NA 3.57 NA 0.00 6.25 NA NA NA NA NA 7.14 NA 1.64 4.76 NA 0.00 NA NA 3.57 0.00 NA NA NA NA NA 3.03 NA NA NA K cassette CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21275807_21281131;chr2L_21275807_21279883 chr2L_21275807_21277277;chr2L_21278430_21281131,chr2L_21278430_21279883 chr2L_21277278_21278429 chr2L_21275724_21275806;chr2L_21281132_21281337 62.07 47.19 56.52 64.08 64.81 61.02 67.57 58.72 63.03 78.26 35.71 57.80 42.55 61.33 61.54 43.56 69.49 54.84 58.23 52.63 46.81 63.46 71.33 72.73 68.67 44.44 63.39 64.86 63.49 61.62 68.67 51.52 67.21 61.60 67.44 85.57 78.70 79.52 74.53 43.00 57.14 60.99 65.62 56.31 63.08 65.26 53.52 62.04 63.83 57.76 63.49 68.75 61.90 68.12 62.07 60.24 64.29 56.25 K intron_retention RhoGAP18B chrX - chrX_19037802_19038037 chrX_19037801_19037802;chrX_19038037_19038038 chrX_19037511_19037801;chrX_19038038_19038528 1.01 0.00 2.13 3.92 0.00 0.00 1.52 2.94 1.61 0.00 0.00 3.33 0.00 0.00 0.00 1.89 0.00 0.00 2.22 2.00 2.00 4.62 1.01 0.00 0.00 5.71 3.03 0.00 3.12 0.00 3.77 0.00 7.14 2.94 2.00 0.00 0.72 1.23 1.68 0.00 2.33 0.98 5.71 0.00 0.00 0.00 1.59 0.00 4.00 0.81 1.75 0.00 0.00 3.23 3.57 0.00 2.70 0.00 K alternative_donor Spt-I,I_chr2R_9057761_9058039 chr2R + chr2R_9056076_9056319 chr2R_9056106_9056319 chr2R_9056320_9056393;chr2R_9056013_9056075 0.00 0.00 0.00 1.27 1.61 0.00 1.47 1.03 0.74 2.56 0.00 0.00 0.00 1.64 1.85 0.00 0.00 0.00 1.47 0.99 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 3.39 0.00 0.00 1.23 0.00 NA 0.00 0.00 0.00 2.44 NA 2.42 2.38 0.00 3.70 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 NA 1.54 0.00 0.00 0.00 K intron_retention Dystrophin chr3R + chr3R_15418846_15420221 chr3R_15418845_15418846;chr3R_15420221_15420222 chr3R_15418545_15418845;chr3R_15420222_15420680 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.82 0.83 0.00 0.00 2.17 0.00 4.35 0.00 2.17 0.00 0.00 0.00 3.45 0.00 0.00 0.94 0.00 0.00 0.00 1.37 0.00 3.85 0.00 0.00 0.00 2.13 1.02 0.00 0.00 0.00 0.00 0.00 1.89 0.00 1.15 0.00 1.32 0.00 0.00 0.00 0.00 1.80 0.00 0.00 0.00 0.00 0.00 1.47 1.19 0.00 0.00 K jcn_only_AD ade2 chr2L - chr2L_6045527_6045920 chr2L_6045527_6045893 chr2L_6044428_6045526;chr2L_6045921_6046003 27.89 22.50 25.93 37.10 24.14 20.93 28.00 29.03 24.35 45.28 20.00 21.46 24.69 24.00 19.23 25.47 23.61 36.45 27.78 26.36 25.93 40.62 46.67 51.16 34.78 20.59 36.84 46.43 48.08 15.91 29.90 35.29 25.25 27.69 27.50 41.67 40.74 35.29 28.26 20.55 28.57 21.19 21.43 31.82 26.47 41.46 47.06 32.39 23.50 54.05 39.58 38.24 25.53 33.33 26.17 NA 28.12 27.78 K cassette CG11138 chrX - chrX_12467443_12475604 chrX_12467443_12467757;chrX_12467848_12475604 chrX_12467758_12467847 chrX_12466805_12467442;chrX_12475605_12477211 61.11 62.16 61.29 60.00 66.67 57.14 32.00 58.62 67.27 47.37 51.52 50.88 36.00 70.00 69.70 65.22 57.69 51.43 48.48 56.14 59.09 60.00 71.64 66.10 48.72 52.00 61.11 72.97 54.29 64.10 70.59 75.00 66.67 56.00 58.82 48.57 54.64 61.40 53.23 49.28 50.00 62.16 80.00 55.56 63.89 69.23 60.00 65.79 70.69 65.71 58.82 53.33 70.97 69.57 75.00 61.29 70.59 74.07 K alternative_acceptor CG6006 chr3R + chr3R_11984036_11984642 chr3R_11984036_11984579 chr3R_11984029_11984035;chr3R_11984643_11984889 84.52 NA NA 75.00 NA NA NA 88.89 90.00 NA NA 87.50 NA NA 71.43 88.89 100.00 NA 71.43 NA NA NA 85.71 NA NA NA 100.00 NA NA NA NA NA NA 77.78 NA NA 83.33 NA NA NA NA 81.82 NA NA NA NA NA NA 81.82 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG10082,E_chr2R_17533874_17544072,RI_chr2R_17537544_17537615,I_chr2R_17543813_17543881 chr2R + chr2R_17540069_17541147;chr2R_17540069_17540417;chr2R_17540069_17542279 chr2R_17540069_17540723 chr2R_17539942_17540068 1.92 0.00 3.85 0.00 0.00 1.89 0.00 5.08 3.36 0.00 2.70 5.56 0.00 2.63 1.59 1.92 1.85 0.00 2.22 1.80 5.00 7.94 2.63 1.16 0.00 0.00 5.13 1.75 2.17 3.33 8.33 0.00 1.43 0.00 3.33 2.00 1.12 2.90 2.22 1.83 4.17 0.88 0.00 3.57 2.04 3.33 4.44 0.00 0.95 1.56 1.75 2.22 4.44 1.49 0.00 2.86 4.55 3.70 K intron_retention sd,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15708329_15713628 chrX_15708328_15708329;chrX_15713628_15713629 chrX_15708059_15708328;chrX_15713629_15713756 0.00 0.00 0.00 4.29 0.00 0.00 2.38 6.25 1.03 0.00 0.00 0.00 0.00 3.85 0.00 2.04 0.00 0.00 2.94 2.88 9.52 3.57 0.00 0.00 2.00 0.00 0.00 2.50 0.00 2.70 6.67 0.00 2.70 0.00 0.00 1.25 0.00 0.00 0.00 2.11 3.45 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr2R_7778750_7781059,I_chr2R_7778971_7781059,Ef1alpha48D,I_chr2R_7779690_7780997,I_chr2R_7779690_7781065,I_chr2R_7779690_7783075,I_chr2R_7779719_7781059,I_chr2R_7779813_7781059,I_chr2R_7779892_7781059,EF_chr2R_7779896_7781065,I_chr2R_7780542_7781059,I_chr2R_7780580_7781059,snoRNA:Me28S-A1322,I_chr2R_7780840_7781059,I_chr2R_7780877_7781059,RI_chr2R_7781135_7783075 chr2R + chr2R_7779690_7781059 chr2R_7779689_7779690;chr2R_7781059_7781060 chr2R_7779622_7779689;chr2R_7781060_7781097 0.12 0.13 0.07 0.09 0.04 0.08 0.11 0.07 0.08 0.22 0.07 0.09 0.04 0.10 0.06 0.12 0.08 0.05 0.07 0.17 0.08 0.12 0.20 0.11 0.08 0.04 0.32 1.06 0.23 0.21 0.05 0.21 0.12 0.08 0.13 0.19 0.19 0.16 0.11 0.14 0.19 0.09 0.09 0.17 0.27 0.27 0.15 0.31 0.12 0.26 0.14 0.11 0.23 0.17 0.08 0.15 0.13 0.39 K alternative_last_exon noncoding_23420,hep chrX - chrX_12977132_12978277 chrX_12977602_12978277 chrX_12976619_12977131 chrX_12977444_12977601 chrX_12978278_12978344 0.90 0.00 0.00 0.64 2.63 1.33 2.42 2.19 1.53 0.00 3.57 1.83 2.86 0.00 1.59 1.85 0.00 1.54 1.20 0.43 0.00 0.96 1.44 0.66 1.19 0.00 1.47 6.25 0.00 0.93 0.88 0.00 0.00 0.65 0.00 0.94 0.00 0.00 0.00 2.03 0.68 2.47 1.22 0.90 0.00 1.07 0.00 0.42 0.65 1.72 0.77 1.28 0.00 0.00 1.20 0.95 0.94 0.37 K jcn_only_AD CG16940,I_chr3L_212740_212843,I_chr3L_212783_212843,noncoding_9585,Kaz1-ORFA_Kaz1-ORFB chr3L + chr3L_212785_212843;chr3L_212788_212843 chr3L_212308_212843 chr3L_212844_212943;chr3L_212275_212307 0.00 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention alpha-Spec chr3L - chr3L_1783683_1784906 chr3L_1783682_1783683;chr3L_1784906_1784907 chr3L_1781759_1783682;chr3L_1784907_1788957 0.00 0.66 0.00 1.16 0.00 0.00 0.74 0.64 0.35 0.00 0.00 1.51 1.20 0.85 0.00 0.82 0.00 0.00 0.00 0.78 0.00 0.47 0.78 0.00 0.00 0.00 0.65 0.00 0.55 0.00 0.00 0.00 0.58 0.00 0.72 1.00 0.00 0.00 0.40 0.59 0.00 0.53 0.00 1.91 0.00 1.18 0.00 0.51 0.60 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.40 1.28 K intron_retention lva,CG6428 chrX - chrX_3850461_3850545 chrX_3850460_3850461;chrX_3850545_3850546 chrX_3850340_3850460;chrX_3850546_3854443 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.69 0.00 0.00 1.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 K alternative_acceptor chic,I_chr2L_5976783_5978547,RI_chr2L_5976783_5980950,I_chr2L_5978244_5979411,RI_chr2L_5979705_5980734 chr2L - chr2L_5976783_5979411 chr2L_5978244_5979411 chr2L_5979412_5979511;chr2L_5976683_5976782 0.09 0.04 0.05 0.17 0.05 0.05 0.14 0.12 0.09 0.14 0.06 0.11 0.08 0.12 0.08 0.15 0.11 0.05 0.11 0.12 0.06 0.19 0.07 0.07 0.07 0.05 0.17 1.26 0.34 0.11 0.09 0.07 0.16 0.07 0.12 0.14 0.06 0.04 0.03 0.09 0.12 0.09 0.13 0.13 0.08 0.08 0.11 0.16 0.08 0.08 0.13 0.06 0.11 0.05 0.08 0.04 0.06 0.12 K intron_retention TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748984_19749783 chr2R_19748983_19748984;chr2R_19749783_19749784 chr2R_19748884_19748983;chr2R_19749784_19750104 50.00 46.15 41.18 55.56 45.45 26.32 43.75 48.28 42.86 NA NA 48.15 50.00 30.77 61.54 47.83 NA 50.00 33.33 56.25 35.71 60.00 63.64 42.86 76.47 46.15 52.63 NA 77.78 56.25 33.33 88.89 81.25 46.15 60.00 68.75 61.54 38.46 68.75 47.37 85.71 36.67 NA 64.29 45.45 80.00 NA 66.67 56.25 58.33 69.23 NA 41.67 NA 34.78 40.00 NA 62.50 K jcn_only_AA CG32581,I_chrX_15692783_15693086 chrX - chrX_15692305_15693086 chrX_15692783_15693086 chrX_15693087_15693155;chrX_15692244_15692304 0.00 5.26 0.00 0.00 NA 0.00 0.00 0.00 1.18 0.00 0.00 0.00 2.86 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention l(1)G0232 chrX - chrX_9523025_9523085 chrX_9523024_9523025;chrX_9523085_9523086 chrX_9522870_9523024;chrX_9523086_9523365 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 97.14 100.00 100.00 97.14 100.00 100.00 97.78 100.00 100.00 97.14 100.00 96.97 100.00 98.28 K intron_retention vir-1,I_chr2L_12404131_12404435,RI_chr2L_12404178_12404435,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,I_chr2L_12421830_12423260 chr2L - chr2L_12404178_12407184 chr2L_12404177_12404178;chr2L_12407184_12407185 chr2L_12404124_12404177;chr2L_12407185_12407466 94.27 92.69 94.66 93.09 96.48 95.26 97.54 94.69 92.15 96.41 97.42 95.07 98.71 93.93 94.41 94.27 94.90 95.98 93.06 93.73 96.70 89.00 88.86 96.74 95.80 95.33 95.21 98.41 89.40 87.91 91.74 93.75 93.55 92.57 96.72 86.33 92.39 98.41 93.36 93.18 95.83 90.62 93.03 90.00 89.78 90.21 95.56 88.37 92.70 97.79 95.75 94.20 94.75 94.54 93.89 94.67 95.65 91.08 K intron_retention CG6038,I_chr3L_11704048_11704107 chr3L - chr3L_11704052_11704107 chr3L_11704051_11704052;chr3L_11704107_11704108 chr3L_11703536_11704051;chr3L_11704108_11704207 0.00 0.00 0.00 15.00 0.00 0.00 0.00 0.00 8.33 0.00 NA 6.67 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 6.12 0.00 0.00 9.09 0.00 0.00 10.00 14.29 0.00 NA 0.00 0.00 0.00 0.00 5.00 0.00 0.00 2.17 3.77 16.28 8.82 NA 2.22 3.33 2.82 2.86 2.50 0.00 0.00 5.71 0.00 NA 0.00 0.00 4.17 9.38 0.00 K jcn_only_AD par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,I_chr2R_15350149_15350210,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350157_15351846;chr2R_15350285_15351846;chr2R_15350437_15351846 chr2R_15350149_15351846 chr2R_15351847_15351914;chr2R_15350068_15350148 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA NA NA K intron_retention CG7081,I_chr3L_8332291_8332360,DNApol-alpha50 chr3L + chr3L_8332435_8332489 chr3L_8332434_8332435;chr3L_8332489_8332490 chr3L_8332361_8332434;chr3L_8332490_8332921 0.00 0.00 6.67 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 5.56 4.76 0.00 NA NA 0.00 3.45 0.00 NA 0.00 0.00 0.00 0.00 18.18 NA NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 8.33 NA 6.06 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2392054;chrX_2392149_2392515;chrX_2392665_2393243 chrX_2392055_2392148;chrX_2392516_2392664 chrX_2387149_2387248;chrX_2393244_2393291 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Mlh1,I_chr2R_4058619_4058671 chr2R + chr2R_4058615_4058671 chr2R_4058619_4058671 chr2R_4058672_4058771;chr2R_4058519_4058614 6.56 14.29 17.65 7.50 4.55 7.14 11.43 7.02 3.90 0.00 3.45 6.06 5.00 8.11 4.26 2.78 0.00 16.67 0.00 5.95 4.35 0.00 5.00 0.00 NA 13.16 5.56 0.00 12.82 6.45 21.15 4.65 4.55 7.25 7.14 5.00 0.00 5.88 0.00 8.47 14.29 5.56 11.11 6.67 5.56 9.30 6.06 8.47 14.29 10.71 5.41 11.43 9.09 7.41 13.33 10.34 12.20 9.23 K alternative_last_exon CG40045,noncoding_14308,I_chr3L_24025959_24028531 chr3L + chr3L_24021824_24028531;chr3L_24021824_24021910 chr3L_24021824_24023854 chr3L_24028532_24029494;chr3L_24021911_24022205 chr3L_24023855_24024038 chr3L_24021648_24021823 92.59 94.81 93.06 89.17 93.75 92.45 96.76 92.59 95.60 93.10 95.45 94.33 89.11 93.94 93.88 94.44 93.44 92.31 93.33 92.73 95.35 90.24 92.94 92.86 92.59 92.45 91.46 87.27 91.89 92.31 95.77 94.74 89.29 93.25 92.59 89.29 83.72 86.96 88.89 93.15 91.11 92.41 94.67 94.51 91.67 91.67 91.25 88.46 94.03 91.43 92.16 92.21 90.16 91.30 92.54 91.14 93.71 92.96 K intron_retention par-1,RI_chr2R_15348122_15356294,I_chr2R_15355073_15356294,RI_chr2R_15355419_15356294,I_chr2R_15359251_15360944,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15355147_15356294 chr2R_15355146_15355147;chr2R_15356294_15356295 chr2R_15354975_15355146;chr2R_15356295_15356318 33.33 25.00 NA 40.91 NA NA 28.57 36.36 35.48 NA NA 34.62 45.45 35.71 15.00 27.59 30.77 7.69 38.10 34.29 NA 46.15 22.73 NA NA 33.33 NA NA 40.00 35.29 20.83 NA 23.81 18.92 35.71 35.71 NA NA NA 29.41 20.00 28.57 37.50 33.33 NA NA NA 45.00 22.58 NA 22.22 NA NA NA 27.78 NA NA 35.71 K intron_retention CG14741 chr3R - chr3R_7899339_7899925 chr3R_7899338_7899339;chr3R_7899925_7899926 chr3R_7899048_7899338;chr3R_7899926_7900017 22.43 23.86 22.43 30.05 30.30 26.53 33.33 22.96 23.04 27.27 31.82 23.30 53.85 17.12 22.66 20.07 18.18 18.92 21.55 24.06 18.45 13.25 19.11 23.47 21.95 12.93 29.82 50.00 17.50 18.63 14.29 28.57 13.29 21.69 23.81 25.35 15.87 22.09 15.79 48.44 34.78 19.92 24.44 12.66 21.43 10.08 16.90 14.15 21.79 61.54 26.27 20.00 20.19 25.00 25.45 24.19 25.77 16.67 K intron_retention CG12811,RI_chr3R_5873666_5874292 chr3R - chr3R_5873666_5874138 chr3R_5873665_5873666;chr3R_5874138_5874139 chr3R_5873566_5873665;chr3R_5874139_5874511 9.50 6.52 10.91 37.50 7.14 9.09 10.64 13.24 7.87 8.70 10.00 1.35 17.14 14.29 10.94 9.52 5.56 9.30 9.52 13.98 21.43 38.46 8.51 10.53 20.00 17.86 16.67 10.00 NA 4.35 13.04 6.06 15.00 10.00 11.11 36.84 0.00 4.08 8.89 11.11 12.50 9.47 6.90 10.26 7.32 6.67 5.00 15.38 8.22 6.82 7.69 2.78 3.57 5.00 9.80 3.70 7.07 6.94 K intron_retention CG10602,mRpL13 chr2L - chr2L_18858463_18858951 chr2L_18858462_18858463;chr2L_18858951_18858952 chr2L_18858023_18858462;chr2L_18858952_18859075 0.00 2.63 2.56 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 3.77 0.00 2.56 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 6.38 5.88 1.54 0.00 0.00 5.71 3.92 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 4.44 6.00 0.00 0.00 K jcn_only_AD tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5960163;chr3R_5959310_5960101;chr3R_5959310_5960041;chr3R_5959310_5959789;chr3R_5959310_5960049;chr3R_5959310_5960182;chr3R_5959310_5960158;chr3R_5959310_5959679 chr3R_5959310_5960026 chr3R_5958937_5959309;chr3R_5960183_5960224 51.72 58.33 43.75 60.71 65.22 65.71 41.90 47.22 38.02 33.33 50.00 53.25 29.31 42.59 53.19 48.62 56.52 51.72 47.69 58.24 58.06 30.00 36.36 44.83 59.26 61.36 44.83 50.00 61.29 57.58 55.56 NA 84.85 48.42 48.48 48.48 NA NA NA 62.00 68.18 56.04 50.91 42.00 70.00 52.94 NA 73.08 41.94 42.31 35.00 39.13 NA NA 56.10 66.67 NA 77.78 K alternative_donor skpA chrX + chrX_550433_551131;chrX_550498_551131;chrX_550818_551131;chrX_550638_551131;chrX_550774_551131;chrX_550523_551131 chrX_550654_551131 chrX_551132_551937;chrX_550426_550432 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 4.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 2.04 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 1.14 K intron_retention Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19565683_19565740 chr2R_19565682_19565683;chr2R_19565740_19565741 chr2R_19565525_19565682;chr2R_19565741_19566011 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Incenp,I_chr2R_3167836_3167975 chr2R + chr2R_3167832_3167975 chr2R_3167836_3167975 chr2R_3167976_3168075;chr2R_3167736_3167831 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon CG1646,I_chr3R_24640561_24640869,I_chr3R_24641816_24641874 chr3R + chr3R_24641449_24641874 chr3R_24641449_24641521,chr3R_24641449_24641497 chr3R_24641875_24642520 chr3R_24641522_24641815 chr3R_24641204_24641448 81.58 68.38 84.35 72.22 77.78 83.02 78.64 77.16 83.59 58.21 85.53 84.04 65.17 85.54 83.82 74.55 73.81 90.20 89.36 79.27 85.19 73.48 81.67 80.14 84.47 80.15 84.81 76.32 54.30 84.55 93.85 62.58 65.37 88.72 84.21 75.00 78.68 80.17 83.93 71.28 81.25 81.58 73.81 88.46 74.62 83.56 88.03 82.58 85.15 83.33 82.94 85.88 79.81 83.33 81.15 75.61 80.92 89.02 K alternative_acceptor CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2815768_2816013;chr2R_2815654_2816013 chr2R_2815657_2816013 chr2R_2816014_2816113;chr2R_2815599_2815653 44.44 50.00 NA 40.00 NA NA 42.86 NA 42.86 NA NA 44.44 NA NA NA NA NA NA NA 38.89 NA 36.36 64.29 62.50 NA NA 66.67 NA 33.33 50.00 NA NA 50.00 42.86 NA 42.86 50.00 66.67 45.45 60.00 33.33 40.00 NA NA 33.33 41.67 28.57 55.56 33.33 54.55 60.00 NA NA NA NA 50.00 NA NA K cassette fon,I_chr2L_19385355_19385669,E_chr2L_19385377_19386086,CE_chr2L_19385715_19386086,I_chr2L_19388570_19389922 chr2L - chr2L_19385364_19385779;chr2L_19385355_19385779 chr2L_19385355_19385669,chr2L_19385364_19385669;chr2L_19385706_19385779 chr2L_19385670_19385705 chr2L_19385277_19385354;chr2L_19385780_19385792 36.84 41.18 39.39 42.86 NA 36.84 25.81 28.57 43.48 33.33 NA 34.88 NA 36.36 30.00 24.00 NA 50.00 25.00 35.00 50.00 65.00 32.00 40.91 30.77 20.00 33.33 35.48 64.00 25.00 42.86 43.33 55.00 31.11 52.38 52.38 45.00 44.44 25.81 21.74 21.43 32.73 29.41 38.46 46.43 32.50 36.36 37.14 25.33 46.67 37.50 35.71 56.25 53.33 38.89 63.64 40.74 25.93 K intron_retention CG14964 chr3L - chr3L_3175338_3175431 chr3L_3175337_3175338;chr3L_3175431_3175432 chr3L_3173106_3175337;chr3L_3175432_3176845 6.25 NA NA NA NA NA NA NA 7.69 NA NA 6.25 NA NA NA NA NA NA NA 5.88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG17124,E_chr2L_10745700_10745781,RI_chr2L_10746079_10753316,I_chr2L_10753685_10755903 chr2L - chr2L_10745572_10745634 chr2L_10745571_10745572;chr2L_10745634_10745635 chr2L_10744283_10745571;chr2L_10745635_10745699 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 10.53 NA NA NA 6.67 NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG2698,I_chr3R_3828169_3828941,I_chr3R_3828880_3828941,I_chr3R_3829483_3829715,I_chr3R_3830586_3830981 chr3R + chr3R_3829483_3829697;chr3R_3829483_3829555;chr3R_3829483_3829709 chr3R_3829483_3829721 chr3R_3829383_3829482;chr3R_3829722_3829815 24.24 35.29 23.81 32.79 29.41 20.69 23.21 35.19 22.41 NA 16.22 16.67 10.34 32.35 26.53 31.91 22.73 NA 26.19 35.29 21.21 27.59 32.69 32.26 20.41 16.33 18.18 19.44 22.95 21.43 29.85 24.24 19.05 44.44 20.93 17.95 27.27 22.22 16.92 28.38 15.62 31.25 26.47 25.40 36.67 13.24 26.92 22.00 12.70 28.57 30.43 24.24 42.31 22.22 27.78 23.08 45.28 8.82 K jcn_only_AA cic,RI_chr3R_16122222_16123529 chr3R + chr3R_16122222_16123529;chr3R_16122222_16124105 chr3R_16122222_16122818 chr3R_16122122_16122221;chr3R_16124106_16124254 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.99 0.00 0.34 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor MSBP,I_chrX_15783766_15784027,RI_chrX_15783766_15784064,I_chrX_15783766_15785978 chrX - chrX_15783766_15783941 chrX_15783782_15783941 chrX_15783942_15783997;chrX_15783666_15783765 6.67 5.26 8.33 10.00 5.38 6.14 7.88 7.17 6.99 7.25 6.56 6.40 8.46 5.16 7.33 6.14 3.70 5.47 9.89 8.03 4.22 6.12 5.04 8.96 10.42 12.50 4.76 5.00 5.22 6.16 7.74 7.69 1.63 7.52 6.98 9.25 6.52 11.96 7.35 6.29 9.52 8.53 5.83 6.94 3.45 4.78 3.45 5.45 5.23 6.96 6.67 4.67 6.67 7.14 7.56 8.57 4.22 8.40 K intron_retention CG5004,E_chrX_17024712_17024996 chrX + chrX_17022951_17023182 chrX_17022950_17022951;chrX_17023182_17023183 chrX_17022271_17022950;chrX_17023183_17023318 1.35 2.02 1.25 0.00 1.79 0.00 3.85 0.85 3.17 0.00 0.00 1.36 0.00 0.00 2.25 1.04 0.00 3.00 0.00 1.57 0.00 0.00 1.60 2.30 1.69 1.37 2.13 1.27 1.30 1.82 4.48 0.00 0.00 0.00 0.00 1.94 1.61 0.00 0.00 2.01 0.00 0.66 1.54 4.11 3.19 1.98 2.60 1.35 1.24 1.89 2.73 1.54 0.00 0.00 0.00 2.41 1.47 0.00 K alternative_donor CG6353 chr3R - chr3R_17488466_17488533 chr3R_17488466_17488531 chr3R_17488441_17488465;chr3R_17488534_17488585 100.00 NA 92.86 100.00 100.00 100.00 100.00 100.00 100.00 88.89 92.31 100.00 90.00 88.89 100.00 100.00 NA 100.00 100.00 97.44 100.00 85.71 100.00 NA NA 88.89 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 NA 92.31 87.50 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 90.00 100.00 92.31 100.00 100.00 100.00 93.75 100.00 100.00 92.86 100.00 96.30 N alternative_donor TepIV,EI_chr2L_19548696_19549582 chr2L + chr2L_19553294_19553361 chr2L_19553303_19553361 chr2L_19553362_19553915;chr2L_19552956_19553293 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention AT25722,CG3376 chr2R + chr2R_20151869_20152304 chr2R_20151868_20151869;chr2R_20152304_20152305 chr2R_20151683_20151868;chr2R_20152305_20152726 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.48 100.00 97.78 100.00 99.39 100.00 100.00 99.00 100.00 100.00 100.00 100.00 99.45 100.00 100.00 100.00 98.28 100.00 96.88 98.57 100.00 97.56 100.00 99.15 100.00 98.08 100.00 97.73 95.16 100.00 100.00 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.63 K jcn_only_AD sec23,I_chr3R_1474873_1475080,I_chr3R_1474899_1475080,I_chr3R_1474960_1475051,I_chr3R_1477727_1478102 chr3R + chr3R_1474960_1475080;chr3R_1474899_1475080 chr3R_1474873_1475080 chr3R_1475081_1475151;chr3R_1474860_1474872 0.00 1.02 1.02 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.55 0.00 1.19 0.00 0.61 1.43 0.00 0.00 0.00 0.00 0.00 0.00 1.43 1.30 1.02 0.00 0.90 0.00 0.00 1.04 0.00 0.00 0.72 0.00 1.05 0.00 0.00 0.00 0.91 0.00 0.56 0.00 0.00 3.33 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 K intron_retention Vrp1,I_chr2R_17996482_17997091,I_chr2R_17996511_17997091,I_chr2R_17997529_17997692 chr2R - chr2R_17996286_17996355 chr2R_17996285_17996286;chr2R_17996355_17996356 chr2R_17995991_17996285;chr2R_17996356_17996416 28.89 46.15 33.33 NA NA NA 43.75 42.86 30.00 NA 30.00 20.00 NA NA NA NA NA 23.68 58.33 NA NA 9.82 NA 22.22 27.78 41.67 30.43 39.29 7.69 36.36 NA 30.00 34.48 50.00 30.77 NA 22.22 NA 26.09 8.70 25.00 27.27 NA 18.18 11.11 5.56 25.00 23.26 58.33 0.00 16.67 NA NA NA 36.36 NA NA 43.75 K jcn_only_AD E2f2 chr2L - chr2L_21155682_21155746 chr2L_21155682_21155743 chr2L_21155572_21155681;chr2L_21155747_21156245 100.00 100.00 100.00 99.24 100.00 100.00 99.15 100.00 99.49 100.00 100.00 99.37 100.00 100.00 100.00 99.21 100.00 98.95 100.00 98.83 98.96 100.00 99.19 100.00 100.00 100.00 99.14 98.53 98.08 100.00 97.56 98.59 100.00 100.00 100.00 100.00 100.00 99.03 100.00 99.06 100.00 99.41 100.00 100.00 97.01 98.85 100.00 100.00 98.86 98.91 99.25 100.00 100.00 98.78 100.00 100.00 100.00 95.45 K intron_retention aPKC,I_chr2R_10833552_10833654,RI_chr2R_10849347_10850391 chr2R - chr2R_10834325_10835146 chr2R_10834324_10834325;chr2R_10835146_10835147 chr2R_10834209_10834324;chr2R_10835147_10835341 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor thoc5 chr2R + chr2R_19841762_19841821 chr2R_19841762_19841818 chr2R_19841616_19841761;chr2R_19841822_19842616 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 1.32 0.00 0.00 0.00 0.00 0.00 3.45 1.59 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 K alternative_donor Gprk1,RI_chr2R_357455_358274 chr2R - chr2R_345603_345658 chr2R_345603_345654 chr2R_345558_345602;chr2R_345659_345760 11.43 NA NA 6.67 NA NA 14.29 9.52 14.29 NA NA NA NA NA NA 19.05 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.88 NA NA NA NA NA 7.69 NA 0.00 NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA 21.43 K multi_cassette cora,I_chr2R_15125277_15130573,I_chr2R_15125940_15130208,I_chr2R_15129291_15129988 chr2R + chr2R_15125940_15130208 chr2R_15125940_15126293;chr2R_15128442_15128462;chr2R_15129291_15130208 chr2R_15126294_15128441;chr2R_15128463_15129290 chr2R_15125887_15125939;chr2R_15130209_15130308 100.00 100.00 100.00 99.82 100.00 100.00 100.00 100.00 100.00 99.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Vps13,I_chr2R_3464510_3464571 chr2R + chr2R_3467465_3467535 chr2R_3467464_3467465;chr2R_3467535_3467536 chr2R_3467181_3467464;chr2R_3467536_3467674 0.00 3.45 0.00 8.57 0.00 0.00 0.00 0.00 0.00 13.79 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 K jcn_only_AA ct chrX + chrX_7554924_7554995 chrX_7554924_7554992 chrX_7554439_7554923;chrX_7554996_7555171 94.34 97.78 97.14 94.34 95.56 100.00 90.48 95.65 92.86 96.43 84.78 94.67 93.94 94.87 95.00 93.48 86.05 97.92 95.24 88.61 92.86 95.24 86.30 91.30 95.83 97.44 95.24 88.00 NA 78.26 96.15 NA 100.00 93.83 91.30 91.43 95.71 97.78 90.00 95.38 NA 88.76 100.00 96.36 NA NA NA 82.86 93.65 NA 90.00 91.30 NA NA 85.37 91.30 100.00 NA K alternative_last_exon NFAT,RI_chrX_13543535_13546911,I_chrX_13544101_13544542 chrX + chrX_13550068_13554772 chrX_13550068_13552140 chrX_13554773_13556719 chrX_13552141_13552678 chrX_13549884_13550067 1.59 1.33 1.67 5.33 1.92 0.00 8.06 3.30 3.31 3.96 0.00 3.25 2.00 4.17 3.12 5.36 6.67 2.13 4.44 2.33 0.00 1.30 0.92 2.35 0.00 2.44 1.35 1.45 0.00 1.75 2.17 0.00 0.00 5.49 0.00 1.59 0.68 0.00 0.00 1.68 0.00 2.31 2.33 0.91 0.00 1.69 0.00 0.94 3.64 0.00 1.12 0.00 2.08 0.00 1.59 0.00 0.00 0.00 K cassette mu2,I_chr3L_1945373_1945436,I_chr3L_1945382_1945647 chr3L - chr3L_1945382_1945647 chr3L_1945382_1945436;chr3L_1945574_1945647 chr3L_1945437_1945573 chr3L_1945282_1945381;chr3L_1945648_1945655 100.00 100.00 100.00 96.15 100.00 100.00 93.75 100.00 100.00 100.00 90.91 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 96.30 91.67 100.00 100.00 100.00 100.00 100.00 100.00 87.50 92.86 100.00 93.75 100.00 100.00 95.00 100.00 92.86 92.31 100.00 100.00 95.83 92.86 95.45 100.00 100.00 100.00 93.33 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 93.33 100.00 92.86 95.83 K intron_retention CG13568,I_chr2R_19941242_19941302 chr2R - chr2R_19941242_19941302 chr2R_19941241_19941242;chr2R_19941302_19941303 chr2R_19941202_19941241;chr2R_19941303_19941402 87.50 NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette Mical,I_chr3R_5863613_5868513 chr3R - chr3R_5863613_5868513 chr3R_5863613_5867693;chr3R_5867721_5868513 chr3R_5867694_5867720 chr3R_5863538_5863612;chr3R_5868514_5868584 55.00 NA NA NA NA NA NA NA 70.00 NA NA NA NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG4877 chr3L + chr3L_16382721_16382785 chr3L_16382721_16382778 chr3L_16382505_16382720;chr3L_16382786_16382977 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 90.91 100.00 100.00 92.31 100.00 100.00 95.45 NA 100.00 90.91 100.00 NA 93.33 100.00 100.00 100.00 100.00 100.00 100.00 91.67 93.75 100.00 94.12 K intron_retention arr,I_chr2R_9343426_9343486,I_chr2R_9347031_9370659 chr2R - chr2R_9369590_9370659 chr2R_9369589_9369590;chr2R_9370659_9370660 chr2R_9369281_9369589;chr2R_9370660_9370692 6.25 NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG32708,RI_chrX_8980352_8980400 chrX + chrX_8980352_8980429 chrX_8980352_8980400 chrX_8980252_8980351;chrX_8980430_8980500 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 4.76 0.00 NA 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 4.00 0.00 NA 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 5.88 0.00 0.00 3.85 2.70 0.00 3.23 K jcn_only_AA CG11006,F_chr3L_12799159_12799339 chr3L + chr3L_12804689_12804777;chr3L_12804689_12804774 chr3L_12804689_12804747 chr3L_12803828_12804688;chr3L_12804778_12804986 72.22 58.70 74.47 86.89 60.00 59.38 60.53 72.22 76.00 62.50 71.88 70.67 84.78 72.50 76.32 77.78 75.86 72.00 73.68 65.75 70.00 80.28 71.11 77.14 78.12 83.33 76.00 75.00 67.35 67.80 64.86 69.81 76.67 86.00 92.31 77.78 55.00 67.65 63.24 69.74 76.09 73.53 75.76 54.00 79.69 62.22 65.22 72.73 89.19 63.33 64.71 90.91 65.62 57.58 70.83 70.21 77.36 76.04 K intron_retention sno chrX - chrX_13091210_13091279 chrX_13091209_13091210;chrX_13091279_13091280 chrX_13091071_13091209;chrX_13091280_13091766 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.81 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor lt,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22832029_22832085 chr2L_22832038_22832085 chr2L_22832086_22832154;chr2L_22831938_22832028 91.87 86.67 89.47 90.00 90.00 100.00 89.86 95.00 90.54 90.91 94.74 95.08 92.11 94.12 84.21 96.36 94.59 92.59 91.84 91.67 86.96 97.06 90.91 93.33 95.00 96.43 88.24 100.00 NA 90.48 95.74 88.24 88.24 94.44 89.66 96.30 100.00 100.00 100.00 88.24 100.00 92.86 83.78 88.24 91.67 91.89 100.00 96.00 91.46 82.14 97.50 91.30 100.00 87.10 89.47 87.88 90.48 96.43 K alternative_last_exon MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17399683_17403481,chr2R_17399683_17403392,chr2R_17399683_17401733,chr2R_17399683_17401713;chr2R_17399683_17399897 chr2R_17399683_17401021 chr2R_17399898_17400225 chr2R_17401022_17401310 chr2R_17399598_17399682 0.00 0.00 0.00 0.00 0.00 0.00 1.37 1.39 1.04 0.00 0.00 1.32 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.69 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 1.18 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 1.18 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG14621,tilB chrX + chrX_21848011_21848366 chrX_21848015_21848366 chrX_21848367_21848914;chrX_21847885_21848010 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 K cassette CG12360,I_chr3R_8854607_8856135,I_chr3R_8855803_8856135,I_chr3R_8855877_8855932,I_chr3R_8855877_8855991 chr3R - chr3R_8854607_8856135 chr3R_8854607_8855640;chr3R_8855803_8856135 chr3R_8855641_8855802 chr3R_8854507_8854606;chr3R_8856136_8856235 100.00 100.00 97.44 91.67 100.00 100.00 97.78 100.00 98.44 100.00 96.43 100.00 100.00 100.00 100.00 97.56 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 94.74 100.00 100.00 100.00 98.00 97.96 100.00 96.77 100.00 100.00 97.83 100.00 100.00 96.83 100.00 100.00 100.00 96.88 100.00 98.04 100.00 100.00 100.00 96.00 100.00 95.83 100.00 100.00 100.00 100.00 K jcn_only_AD Patj,CG12022 chr3L + chr3L_1798924_1799009 chr3L_1798954_1799009 chr3L_1799010_1800699;chr3L_1798831_1798923 81.69 NA 84.00 66.67 NA NA NA 77.78 80.00 79.17 58.33 93.48 NA 90.00 78.26 NA 82.61 80.95 69.57 84.44 NA 91.89 75.00 80.95 NA NA 85.71 92.86 NA 85.71 66.67 80.00 87.23 72.41 NA NA 81.69 83.33 71.88 82.35 NA 78.95 NA 85.71 81.82 66.67 NA 76.32 92.59 NA 92.59 NA 95.45 NA 75.00 90.48 80.00 89.19 K alternative_donor CG9795,I_chr3R_150391_150451 chr3R + chr3R_150391_150451 chr3R_150395_150451 chr3R_150452_150533;chr3R_150310_150390 100.00 100.00 100.00 100.00 90.91 100.00 94.74 96.30 100.00 100.00 NA 95.65 100.00 100.00 100.00 100.00 100.00 NA 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 95.24 100.00 100.00 100.00 100.00 94.12 95.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 96.67 96.55 100.00 100.00 100.00 100.00 100.00 95.00 100.00 97.62 K alternative_donor Rox8,I_chr3R_19872211_19872659,I_chr3R_19872214_19872630,I_chr3R_19872214_19872636,I_chr3R_19872214_19872838,I_chr3R_19876189_19876240 chr3R - chr3R_19872214_19873834;chr3R_19872214_19873682;chr3R_19872214_19873550 chr3R_19872214_19873540 chr3R_19872114_19872213;chr3R_19873835_19873903 72.08 80.00 61.54 64.71 50.00 66.67 92.86 46.67 60.87 66.67 80.00 66.67 50.00 72.73 64.29 68.75 54.55 62.50 69.23 59.09 66.67 100.00 90.91 75.00 62.50 66.67 85.71 NA 85.71 85.71 64.29 75.00 60.00 60.87 75.00 90.91 75.00 75.00 80.00 100.00 80.00 73.68 62.50 66.67 75.00 54.55 75.00 75.00 60.00 75.00 71.43 80.00 83.33 80.00 61.54 100.00 80.00 71.43 K intron_retention Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24357302_24365640 chr3R_24357301_24357302;chr3R_24365640_24365641 chr3R_24357241_24357301;chr3R_24365641_24366053 39.59 NA NA 26.32 NA NA 41.67 37.50 31.25 NA NA 42.86 100.00 NA NA NA NA NA NA 42.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA K intron_retention CG13865,I_chrX_22415456_22415654,RI_chrX_22415518_22416288 chrX + chrX_22415518_22415654 chrX_22415517_22415518;chrX_22415654_22415655 chrX_22415418_22415517;chrX_22415655_22415754 0.00 3.92 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 6.82 0.00 4.08 0.00 1.72 0.00 0.00 8.82 0.00 0.00 0.00 2.56 0.00 0.00 0.00 4.65 0.00 0.00 2.63 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.06 K intron_retention CHKov2 chr3R - chr3R_21156095_21156144 chr3R_21156094_21156095;chr3R_21156144_21156145 chr3R_21155920_21156094;chr3R_21156145_21156634 11.52 NA NA 6.67 NA NA 13.04 21.05 30.00 NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA 6.98 NA NA NA NA NA NA 8.00 10.00 22.22 NA 23.08 40.00 NA NA NA NA NA 0.00 16.67 21.05 NA NA NA 4.35 7.14 0.00 21.43 27.78 NA NA NA NA NA NA 33.33 7.69 K multi_cassette gish,I_chr3R_12125412_12126290 chr3R + chr3R_12123068_12126966 chr3R_12123068_12123766;chr3R_12123845_12124191;chr3R_12124273_12126966 chr3R_12123767_12123844;chr3R_12124192_12124272 chr3R_12122897_12123067;chr3R_12126967_12127073 100.00 95.83 100.00 100.00 100.00 100.00 97.87 100.00 100.00 94.74 100.00 98.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 97.30 100.00 95.00 100.00 100.00 100.00 73.91 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.63 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 96.67 95.45 100.00 100.00 100.00 100.00 K intron_retention pnt,I_chr3R_19118404_19119566,I_chr3R_19139278_19163617,I_chr3R_19181524_19181702 chr3R - chr3R_19137929_19138608 chr3R_19137928_19137929;chr3R_19138608_19138609 chr3R_19137704_19137928;chr3R_19138609_19138812 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention Moca-cyp chr3R + chr3R_24167182_24167249 chr3R_24167181_24167182;chr3R_24167249_24167250 chr3R_24167094_24167181;chr3R_24167250_24167936 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 55.56 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 70.97 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 65.00 K jcn_only_AA mRpL20,RI_chr3L_13010445_13010503,RI_chr3L_13010729_13010775 chr3L - chr3L_13010445_13010503 chr3L_13010450_13010503 chr3L_13010504_13010570;chr3L_13010382_13010444 98.67 100.00 100.00 100.00 100.00 100.00 97.50 98.59 98.92 100.00 94.59 97.37 100.00 100.00 97.18 96.15 100.00 97.96 96.00 97.70 100.00 NA 94.74 100.00 100.00 97.96 97.44 100.00 97.56 94.44 100.00 100.00 98.18 96.88 100.00 95.35 97.62 97.87 98.08 96.61 98.75 98.13 100.00 100.00 100.00 95.08 98.33 100.00 100.00 100.00 100.00 95.12 100.00 100.00 98.15 100.00 96.43 98.60 K alternative_donor CG8839,I_chr2R_8229288_8229488,I_chr2R_8229288_8231538 chr2R - chr2R_8229288_8232025;chr2R_8229288_8231964;chr2R_8229288_8231966 chr2R_8229288_8231968 chr2R_8229188_8229287;chr2R_8232026_8232112 3.55 3.64 4.27 3.54 2.78 3.53 2.75 1.12 2.03 2.22 1.89 3.93 4.00 3.92 3.33 5.10 2.78 3.31 1.94 3.78 4.30 1.15 3.45 2.90 5.08 2.08 6.52 2.99 6.94 4.44 3.55 4.41 4.41 3.55 8.00 4.44 7.94 4.55 3.85 3.29 3.64 3.01 5.45 5.48 4.88 2.17 2.22 2.83 3.54 5.00 5.45 5.08 1.82 0.00 2.42 1.92 2.82 5.52 K intron_retention CG34293 chr3R - chr3R_22991093_22991153 chr3R_22991092_22991093;chr3R_22991153_22991154 chr3R_22990831_22991092;chr3R_22991154_22991268 0.00 NA NA 5.00 NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 33.33 NA 0.00 7.14 0.00 0.00 NA NA NA NA NA 0.00 5.56 7.41 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 0.00 K intron_retention Psn,RI_chr3L_20430213_20430358 chr3L + chr3L_20427445_20427647 chr3L_20427444_20427445;chr3L_20427647_20427648 chr3L_20427187_20427444;chr3L_20427648_20427812 0.00 0.00 5.00 18.18 0.00 NA 12.50 0.00 0.00 NA 0.00 2.86 8.33 10.53 0.00 12.50 0.00 NA 0.00 2.86 NA 0.00 0.00 0.00 NA 0.00 4.00 13.33 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 7.69 0.00 NA 0.00 NA 10.53 0.00 NA 0.00 0.00 0.00 NA NA 0.00 4.76 0.00 0.00 NA K intron_retention Cip4,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4324448_4324861 chr3L_4324447_4324448;chr3L_4324861_4324862 chr3L_4324284_4324447;chr3L_4324862_4324996 7.69 6.90 9.09 16.67 7.14 16.67 19.70 16.36 13.24 2.94 0.00 12.28 6.25 7.41 13.16 11.63 11.76 3.28 14.81 6.35 5.26 0.00 5.00 10.71 8.33 10.00 7.69 15.79 0.00 0.00 8.57 13.79 2.70 13.89 11.76 10.00 6.90 4.55 16.00 13.79 8.11 9.84 6.67 8.00 2.13 7.32 9.52 0.00 16.42 0.00 2.94 14.29 4.76 5.88 6.25 4.76 4.00 1.37 K intron_retention CG7565 chr3L - chr3L_8081537_8081595 chr3L_8081536_8081537;chr3L_8081595_8081596 chr3L_8081369_8081536;chr3L_8081596_8082112 0.00 0.00 0.00 0.00 NA NA NA 10.53 0.00 NA NA 0.00 NA NA NA 9.52 NA NA NA 0.00 NA NA 5.56 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA 14.29 0.00 NA 4.76 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA N multi_cassette CG3635,I_chr2L_22179420_22179486 chr2L + chr2L_22175603_22182737 chr2L_22175603_22179486;chr2L_22179567_22179631;chr2L_22182055_22182737 chr2L_22179487_22179566;chr2L_22179632_22182054 chr2L_22175591_22175602;chr2L_22182738_22183329 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 NA 100.00 100.00 100.00 100.00 100.00 K intron_retention CG34413,RI_chr2R_20769295_20770153,I_chr2R_20771136_20772048,I_chr2R_20773500_20774745 chr2R + chr2R_20769150_20770158 chr2R_20769149_20769150;chr2R_20770158_20770159 chr2R_20769141_20769149;chr2R_20770159_20770253 55.56 58.33 72.73 43.75 29.41 NA 68.75 50.00 48.39 NA NA 55.00 NA 63.64 60.00 66.67 54.55 54.55 53.33 57.14 NA 92.31 64.29 50.00 NA 63.64 78.57 87.50 76.47 NA 54.55 NA 83.33 55.56 NA NA 53.33 NA 36.36 57.69 NA 45.83 NA 55.56 NA NA NA NA 47.83 NA 53.85 NA NA NA 41.18 NA NA NA K intron_retention Hr96 chr3R + chr3R_20852947_20853969 chr3R_20852946_20852947;chr3R_20853969_20853970 chr3R_20852123_20852946;chr3R_20853970_20854179 0.00 NA NA 0.00 NA NA 17.65 NA 2.56 NA NA 10.53 NA NA NA 0.00 NA 0.00 NA 4.55 NA 11.76 0.00 0.00 NA NA 0.00 12.50 0.00 0.00 NA 10.53 NA 3.85 NA NA 0.00 0.00 0.00 3.03 10.53 0.00 NA 0.00 5.00 NA NA 15.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 25.00 N cassette I_chr3R_16141663_16144698,CG5077,I_chr3R_16147605_16147670 chr3R + chr3R_16145723_16147197 chr3R_16145723_16145936;chr3R_16146174_16147197 chr3R_16145937_16146173 chr3R_16145491_16145722;chr3R_16147198_16147358 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.76 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention noncoding_9708 chr3L - chr3L_637690_637747 chr3L_637689_637690;chr3L_637747_637748 chr3L_637486_637689;chr3L_637748_637813 92.86 NA NA 100.00 NA NA 100.00 90.00 92.86 83.33 NA 100.00 90.91 100.00 NA 93.33 NA NA 90.00 90.00 NA 100.00 100.00 NA NA NA 100.00 NA 90.00 90.00 95.24 100.00 90.00 91.67 NA NA 100.00 NA 90.91 94.74 90.00 92.86 NA 88.89 93.33 93.33 84.62 100.00 94.44 NA 91.67 100.00 NA NA 90.00 90.00 NA 90.91 K jcn_only_AD Lam chr2L + chr2L_5543273_5543324;chr2L_5542864_5543324;chr2L_5542661_5543324 chr2L_5542656_5543324 chr2L_5543325_5543794;chr2L_5542527_5542655 0.00 1.05 0.00 0.79 0.00 0.00 0.00 0.81 0.00 0.70 0.00 0.00 1.45 0.00 2.50 0.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.87 0.00 0.00 2.06 0.63 0.81 0.82 0.00 0.00 1.60 0.29 0.00 0.43 2.15 0.63 1.14 0.00 0.00 0.60 0.89 0.00 0.68 0.00 0.92 1.14 1.03 0.00 1.43 1.12 K intron_retention mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818607_7818853 chr3R_7818606_7818607;chr3R_7818853_7818854 chr3R_7818507_7818606;chr3R_7818854_7818892 96.88 96.55 89.66 89.19 100.00 96.30 95.60 98.67 93.02 100.00 100.00 98.59 98.18 100.00 98.00 96.30 88.10 93.10 95.65 97.85 100.00 90.91 96.55 100.00 100.00 96.30 97.83 88.89 100.00 93.75 96.88 100.00 96.67 98.68 100.00 100.00 95.45 95.83 96.00 100.00 94.12 94.87 93.02 96.43 94.12 96.97 100.00 95.24 98.80 96.67 97.50 100.00 100.00 100.00 97.83 100.00 96.30 96.88 K alternative_donor Syn1,I_chr3L_21753613_21754057 chr3L - chr3L_21740398_21740607 chr3L_21740398_21740601 chr3L_21740203_21740397;chr3L_21740608_21740900 42.12 21.43 35.71 NA NA 30.77 NA NA 40.91 36.36 NA NA NA NA NA NA NA NA NA 47.06 NA NA 35.29 40.91 NA NA NA NA 55.56 NA NA 50.00 NA 33.33 28.57 44.00 29.41 41.38 41.38 56.52 46.15 40.00 NA 56.25 33.33 37.50 47.06 42.86 43.75 NA 50.00 45.45 47.83 50.00 NA 47.62 25.00 42.86 K intron_retention proPO-A1 chr2R - chr2R_13775116_13775174 chr2R_13775115_13775116;chr2R_13775174_13775175 chr2R_13774616_13775115;chr2R_13775175_13775427 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.45 0.00 0.00 0.74 0.00 0.00 1.03 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention alt chr3R - chr3R_13500526_13500610 chr3R_13500525_13500526;chr3R_13500610_13500611 chr3R_13499903_13500525;chr3R_13500611_13500733 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 35.29 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD ph-p,I_chrX_2025760_2030488,I_chrX_2025760_2030587 chrX - chrX_2025760_2030498 chrX_2025760_2030049 chrX_2025660_2025759;chrX_2030499_2030588 82.61 NA NA NA NA NA NA NA 82.61 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG2225 chr2L - chr2L_21673273_21677498 chr2L_21673272_21673273;chr2L_21677498_21677499 chr2L_21672857_21673272;chr2L_21677499_21677530 20.00 NA NA 14.29 NA NA 35.00 14.29 17.39 NA NA 27.78 14.29 NA NA 20.00 7.14 NA 20.00 26.92 NA NA NA NA NA 50.00 NA NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA 44.44 15.38 NA NA NA NA NA 20.00 NA NA NA NA NA 30.77 NA NA NA K intron_retention CG17737,I_chr3L_3223527_3224313,I_chr3L_3223650_3223769,I_chr3L_3223943_3224313 chr3L + chr3L_3223527_3223769 chr3L_3223526_3223527;chr3L_3223769_3223770 chr3L_3223475_3223526;chr3L_3223770_3223869 0.51 1.06 0.60 0.00 0.00 0.80 0.00 0.00 0.45 1.06 0.00 0.39 0.00 0.68 1.03 0.61 1.52 0.00 0.00 0.69 0.00 0.72 0.47 0.45 0.00 0.00 0.27 3.17 2.03 0.00 0.73 0.00 0.93 0.61 0.00 0.49 0.75 0.61 0.00 0.61 3.01 0.41 0.00 1.45 1.25 0.62 0.58 1.65 0.51 0.71 0.57 0.00 0.34 0.00 0.64 0.44 0.32 0.90 K intron_retention CG31243,CG42457 chr3R + chr3R_13836297_13837817 chr3R_13836296_13836297;chr3R_13837817_13837818 chr3R_13836063_13836296;chr3R_13837818_13837854 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG11880,I_chr3R_24949827_24951052,CE_chr3R_24962426_24962797 chr3R + chr3R_24949827_24951129;chr3R_24949827_24951052 chr3R_24949827_24951126 chr3R_24949727_24949826;chr3R_24951130_24951152 88.89 94.87 82.22 89.74 88.64 92.50 85.94 88.41 92.77 89.80 85.71 88.06 93.94 79.17 90.57 87.88 89.74 85.00 90.70 89.66 88.57 92.11 84.31 83.33 78.79 84.13 88.89 84.62 89.90 92.16 87.95 91.07 84.30 91.94 90.62 81.13 93.15 89.13 93.33 89.22 88.71 89.53 100.00 89.04 85.71 93.94 86.84 88.37 89.16 91.30 82.61 82.86 94.74 95.00 87.30 85.19 87.10 83.58 K alternative_acceptor CG1265,I_chr3L_4255296_4255550 chr3L + chr3L_4255296_4255609;chr3L_4255296_4255550;chr3L_4255296_4255457 chr3L_4255296_4255353 chr3L_4255196_4255295;chr3L_4255610_4255650 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 1.96 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 1.30 0.00 2.13 K intron_retention Pvf2 chr2L - chr2L_7083729_7084481 chr2L_7083728_7083729;chr2L_7084481_7084482 chr2L_7083186_7083728;chr2L_7084482_7084625 15.75 NA 8.70 19.30 NA 10.71 41.18 16.95 16.13 NA NA 11.48 NA 18.60 4.00 19.23 12.50 25.00 16.22 16.67 NA 26.09 26.09 29.41 NA 15.00 11.11 NA 26.67 NA 6.90 0.00 11.76 12.16 13.79 38.89 NA NA NA 13.33 18.75 18.37 6.67 12.00 17.65 5.00 NA 28.57 11.94 23.08 15.38 17.65 NA NA 9.68 NA NA 5.88 N intron_retention CG16971,CG33229,I_chr3L_225856_225909,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_224886_224972 chr3L_224885_224886;chr3L_224972_224973 chr3L_224824_224885;chr3L_224973_225140 100.00 73.33 100.00 100.00 100.00 100.00 75.44 100.00 78.75 75.00 62.07 80.39 100.00 79.49 100.00 85.37 100.00 100.00 83.72 76.81 100.00 64.41 100.00 100.00 70.00 75.00 82.26 75.00 67.57 100.00 100.00 100.00 77.55 87.69 100.00 100.00 68.97 100.00 100.00 52.27 77.42 75.00 82.93 100.00 100.00 100.00 100.00 68.42 82.61 100.00 82.86 100.00 100.00 100.00 100.00 100.00 100.00 76.00 K alternative_donor R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8088517_8089184;chr2L_8088454_8089184 chr2L_8088371_8089184 chr2L_8089185_8089284;chr2L_8088362_8088370 4.17 NA 9.09 22.22 NA NA 7.69 7.69 7.14 NA NA 0.00 9.09 10.00 0.00 3.57 NA 0.00 8.33 4.17 0.00 NA 0.00 NA 16.67 0.00 NA NA NA NA 0.00 NA 28.57 10.00 0.00 7.14 NA NA NA 0.00 0.00 6.25 22.22 16.67 NA 0.00 NA NA 3.85 NA 0.00 NA 0.00 NA 12.50 0.00 NA NA K intron_retention Mdh,I_chr3R_22982950_22983067 chr3R + chr3R_22982028_22982865 chr3R_22982027_22982028;chr3R_22982865_22982866 chr3R_22981863_22982027;chr3R_22982866_22982949 92.93 91.25 86.57 96.51 93.62 92.73 99.17 93.71 94.57 81.08 98.21 95.17 98.57 91.36 89.19 89.29 100.00 93.10 89.81 97.20 96.49 83.33 87.50 92.42 97.92 98.18 96.77 97.37 89.71 93.33 86.76 94.57 89.04 90.23 91.38 81.72 88.46 97.14 87.76 97.00 94.68 89.93 94.29 91.03 94.52 88.74 87.74 93.07 94.20 98.61 89.06 94.23 80.95 96.97 88.24 86.67 92.93 91.55 K intron_retention CG6852,CG34255 chr3L + chr3L_18863661_18863713 chr3L_18863660_18863661;chr3L_18863713_18863714 chr3L_18863528_18863660;chr3L_18863714_18864023 0.00 0.00 0.00 4.44 NA 0.00 3.45 2.13 2.38 0.00 0.00 0.00 0.00 13.64 0.00 0.00 0.00 0.00 0.00 8.33 0.00 NA 0.00 0.00 NA 3.33 9.09 NA 4.17 NA 5.56 0.00 0.00 0.00 NA NA 0.00 0.00 8.33 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Nedd4,I_chr3L_17534504_17535990,I_chr3L_17535485_17536604,I_chr3L_17536186_17536604,I_chr3L_17536813_17536863 chr3L + chr3L_17535485_17535650 chr3L_17535484_17535485;chr3L_17535650_17535651 chr3L_17535417_17535484;chr3L_17535651_17535912 26.32 NA NA NA NA NA NA NA NA NA NA 23.53 NA NA NA NA NA NA NA 26.32 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA NA K intron_retention CG8397 chr2R - chr2R_11903965_11904029 chr2R_11903964_11903965;chr2R_11904029_11904030 chr2R_11903836_11903964;chr2R_11904030_11904176 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette mbl,I_chr2R_13163569_13203579 chr2R + chr2R_13239811_13249484 chr2R_13239811_13248617;chr2R_13248660_13249484 chr2R_13248618_13248659 chr2R_13239634_13239810;chr2R_13249485_13249602 0.00 NA NA NA NA 0.00 NA 5.00 3.57 NA NA 0.00 NA NA NA NA NA NA 0.00 0.00 NA 4.35 6.67 NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA 4.35 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor l(1)G0196,I_chrX_21900456_21904601 chrX + chrX_21905577_21906869 chrX_21905577_21906064 chrX_21905205_21905576;chrX_21906870_21906886 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG7692 chr3L + chr3L_17349381_17349441 chr3L_17349381_17349438 chr3L_17348767_17349380;chr3L_17349442_17351141 69.70 NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 72.73 NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG7987,RI_chr3R_10400799_10401492 chr3R - chr3R_10400608_10401492;chr3R_10400799_10401492 chr3R_10400782_10401492 chr3R_10401493_10401559;chr3R_10400270_10400607 56.67 37.50 52.63 43.14 50.00 50.00 68.85 55.77 57.14 62.50 45.45 51.28 89.66 58.54 50.00 42.42 64.29 38.71 64.10 56.10 52.00 48.89 49.25 44.00 55.88 63.64 43.48 51.22 56.67 57.89 43.84 57.69 62.96 58.33 64.71 58.97 61.22 51.43 46.38 66.23 72.73 58.73 57.58 57.14 46.15 63.89 60.00 60.00 54.02 68.97 60.61 65.62 59.09 58.62 50.00 42.42 48.39 56.67 K jcn_only_AD CSN5 chr3R + chr3R_12296792_12296850;chr3R_12296683_12296850 chr3R_12296786_12296850 chr3R_12296851_12297070;chr3R_12296215_12296682 26.19 17.65 20.27 23.44 24.53 23.46 21.80 18.75 26.62 19.51 25.00 26.38 22.86 26.92 31.91 25.00 29.69 26.60 32.50 29.22 28.30 24.44 25.62 31.67 28.12 37.11 20.18 16.00 29.63 35.85 30.85 24.66 26.87 24.65 26.25 31.43 26.19 28.57 27.36 23.08 29.35 24.29 20.00 15.12 22.73 30.60 27.20 21.70 22.29 24.39 21.14 15.85 27.38 29.13 28.42 28.83 28.16 23.53 K jcn_only_AD RhoGAP68F,RI_chr3L_12133229_12134100 chr3L + chr3L_12132052_12133062 chr3L_12132202_12133062 chr3L_12133063_12133228;chr3L_12131974_12132051 4.32 7.02 0.00 9.43 4.23 3.12 7.36 5.33 2.36 5.41 5.95 6.84 4.88 3.70 7.22 4.88 6.10 1.56 5.93 5.33 7.32 2.00 3.70 1.33 5.56 3.17 5.88 0.00 8.33 0.00 2.56 11.43 1.89 3.17 9.52 11.76 4.72 3.92 3.12 1.32 0.00 4.32 1.37 4.69 2.17 8.93 9.80 3.33 5.66 0.00 8.33 0.00 3.57 4.76 1.10 0.00 5.08 0.00 K intron_retention CG10737 chr2R + chr2R_15062814_15063752 chr2R_15062813_15062814;chr2R_15063752_15063753 chr2R_15062592_15062813;chr2R_15063753_15063852 92.31 91.25 90.00 93.91 93.75 92.00 70.87 92.31 92.63 87.50 94.37 93.79 95.35 90.91 91.36 95.74 94.94 95.88 95.18 90.50 90.32 87.84 94.25 95.24 96.36 98.86 98.67 91.49 91.49 93.15 91.59 89.09 87.63 94.21 95.00 93.48 97.96 90.79 94.12 91.57 90.20 92.98 91.43 94.25 75.90 93.14 92.77 86.44 91.72 98.59 92.22 90.16 88.89 92.19 95.00 92.31 93.10 88.42 K jcn_only_AD msb1l chr2L + chr2L_19577826_19578039 chr2L_19577975_19578039 chr2L_19578040_19579131;chr2L_19577735_19577825 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.52 98.89 97.78 99.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.18 100.00 100.00 100.00 100.00 98.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Rala chrX - chrX_3601525_3602776 chrX_3601524_3601525;chrX_3602776_3602777 chrX_3601401_3601524;chrX_3602777_3602951 18.18 16.67 17.50 28.57 0.00 8.33 31.43 12.07 12.50 17.65 14.29 17.86 10.53 5.56 10.00 19.61 18.18 12.90 17.07 12.50 34.48 33.33 28.21 19.05 19.05 14.71 20.00 66.67 48.15 18.18 17.50 22.50 21.43 12.86 16.67 38.10 9.52 16.67 32.00 26.00 31.25 9.33 9.68 30.95 33.33 20.41 20.00 23.21 17.74 28.00 21.62 15.38 22.22 24.00 9.80 20.00 18.92 18.18 K jcn_only_AD CG11309,I_chr3L_21297192_21297708 chr3L - chr3L_21297192_21297542;chr3L_21297192_21297487 chr3L_21297192_21297389 chr3L_21297092_21297191;chr3L_21297543_21297554 90.48 NA 90.00 96.30 NA 86.96 93.75 89.66 86.00 NA NA 70.59 NA NA NA 93.75 NA NA 74.19 96.30 NA NA NA 76.19 NA NA NA NA 90.48 NA 84.85 91.30 92.59 90.62 NA NA NA NA NA NA NA 92.31 NA NA NA 90.48 NA 100.00 88.89 NA NA NA NA NA 88.00 NA 95.83 87.18 K intron_retention CG13900,snoRNA:Me28S-A771,I_chr3L_830745_830907 chr3L - chr3L_830342_830621 chr3L_830341_830342;chr3L_830621_830622 chr3L_830034_830341;chr3L_830622_830714 4.62 0.00 3.03 5.93 1.41 0.00 8.70 4.72 6.00 4.00 1.47 7.00 4.92 6.35 3.90 7.62 4.62 0.00 4.88 5.68 0.00 6.35 8.14 4.00 0.00 0.00 6.98 15.79 11.11 11.54 0.83 7.14 5.00 6.14 5.66 7.41 5.61 3.03 3.81 6.19 0.00 4.27 4.62 6.67 0.00 10.20 0.00 0.00 3.09 3.77 5.04 4.29 5.56 0.00 2.44 4.35 4.05 6.78 K intron_retention CG31619,I_chr2L_21725446_21728027 chr2L + chr2L_21725446_21726000 chr2L_21725445_21725446;chr2L_21726000_21726001 chr2L_21725346_21725445;chr2L_21726001_21726019 14.29 NA NA 8.33 NA NA 6.25 41.67 29.41 0.00 NA 20.00 NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA 25.00 NA NA NA NA NA 0.00 NA NA NA NA NA 25.00 NA NA 17.65 NA NA 0.00 NA NA 14.29 22.22 NA NA NA NA NA NA NA NA 0.00 K alternative_donor CG2126,RI_chr3R_27602105_27602266,REI_chr3R_27602105_27602291,RI_chr3R_27602105_27602308 chr3R - chr3R_27602105_27602266 chr3R_27602105_27602166 chr3R_27602005_27602104;chr3R_27602267_27602326 93.33 100.00 100.00 83.33 91.67 84.62 70.59 94.12 95.24 100.00 91.67 100.00 100.00 90.91 87.50 93.75 90.00 87.50 92.86 95.65 83.33 88.89 100.00 100.00 100.00 93.33 88.89 NA 100.00 100.00 87.50 88.89 91.67 83.33 100.00 NA 91.67 100.00 100.00 100.00 83.33 79.17 90.00 100.00 100.00 100.00 100.00 100.00 90.91 88.89 93.33 100.00 100.00 100.00 94.12 92.31 91.67 93.33 N cassette wun,I_chr2R_5297151_5300729,I_chr2R_5297159_5300813 chr2R - chr2R_5288654_5289913 chr2R_5288654_5289280;chr2R_5289740_5289913 chr2R_5289281_5289739 chr2R_5288031_5288653;chr2R_5289914_5290090 23.81 15.15 33.33 13.79 16.67 19.05 16.67 27.59 15.00 15.38 78.95 20.51 20.00 26.32 33.33 36.84 21.74 72.22 28.57 25.45 54.55 17.65 20.00 21.74 16.67 22.22 25.00 37.04 29.17 9.09 17.95 29.41 31.58 25.71 28.00 11.76 21.15 13.51 16.67 22.92 25.00 28.57 18.18 25.00 29.63 24.24 23.08 15.38 23.91 25.71 23.81 36.84 20.83 22.86 26.47 19.51 28.26 24.14 K alternative_acceptor JhI-21,I_chr2L_12055360_12055714 chr2L - chr2L_12055334_12055901 chr2L_12055360_12055901 chr2L_12055902_12055978;chr2L_12055328_12055333 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.13 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.25 100.00 100.00 100.00 K jcn_only_AD CG42389,I_chr2L_16622842_16634725,chr2L_16628843_16629150.0 chr2L + chr2L_16559945_16652742 chr2L_16622842_16652742 chr2L_16652743_16652912 99.55 100.00 98.88 98.33 99.23 100.00 99.46 100.00 100.00 100.00 100.00 99.72 100.00 99.39 99.55 100.00 99.27 100.00 99.22 99.46 100.00 97.18 99.19 99.08 100.00 99.43 99.15 100.00 99.44 100.00 97.50 98.67 99.74 99.22 98.58 99.46 99.25 100.00 100.00 99.79 100.00 99.45 99.21 99.54 100.00 100.00 100.00 100.00 99.36 97.59 99.11 100.00 100.00 100.00 100.00 98.78 98.85 100.00 K cassette slgA,I_chrX_21247694_21251677,I_chrX_21253735_21253820 chrX + chrX_21247694_21251677;chrX_21247694_21250999 chrX_21247694_21250614;chrX_21250737_21251677,chrX_21250737_21250999 chrX_21250615_21250736 chrX_21247594_21247693;chrX_21251678_21251759 66.67 73.33 70.00 65.00 80.00 50.00 100.00 66.67 66.67 100.00 87.50 41.38 87.50 66.67 58.82 68.42 20.00 41.67 100.00 65.22 66.67 NA 52.00 82.35 60.00 37.50 72.73 NA 44.44 66.67 63.64 100.00 80.00 68.18 66.67 NA 44.00 61.11 61.11 50.00 NA 60.00 90.00 58.82 NA 75.00 75.00 85.71 64.00 71.43 71.43 70.00 83.33 75.00 61.11 78.57 NA NA K jcn_only_AA tral,I_chr3L_12512171_12512251 chr3L + chr3L_12510160_12510527 chr3L_12510160_12510515 chr3L_12509677_12510159;chr3L_12510528_12511057 13.79 13.04 10.50 30.28 12.32 13.48 12.82 14.88 11.97 18.99 9.32 10.20 11.97 12.12 11.30 13.79 11.81 13.57 14.29 14.07 14.86 24.70 20.32 13.53 27.27 24.48 14.34 26.22 22.18 15.38 11.50 19.23 17.84 9.52 16.60 66.67 20.27 13.58 16.15 15.35 13.89 9.19 12.00 14.61 20.40 12.60 12.71 12.87 9.41 15.85 12.72 15.27 12.03 13.07 14.14 15.68 9.85 10.87 K intron_retention CG33129,I_chr2L_10966410_10967142,noncoding_2515,I_chr2L_10966622_10967108 chr2L - chr2L_10966410_10968437 chr2L_10966409_10966410;chr2L_10968437_10968438 chr2L_10966389_10966409;chr2L_10968438_10968583 0.00 0.00 0.00 2.22 2.70 2.70 0.00 0.00 1.02 0.00 2.50 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 1.22 2.78 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Hsf,I_chr2R_14018415_14018474,RI_chr2R_14021578_14021911,RI_chr2R_14021614_14021911 chr2R - chr2R_14021601_14021911 chr2R_14021614_14021911 chr2R_14021912_14022011;chr2R_14021514_14021600 19.35 18.75 18.18 8.33 16.67 15.00 19.35 7.69 19.35 NA NA 13.89 14.29 29.41 40.00 16.67 22.22 25.00 17.86 20.00 NA NA 15.00 27.78 16.67 9.09 17.65 NA NA 12.50 18.75 7.69 38.46 22.73 23.08 NA 27.27 NA 15.38 27.78 NA 24.32 25.00 16.67 NA 30.77 NA 30.77 20.45 5.88 25.00 20.00 NA NA 23.08 30.00 NA 30.77 K alternative_acceptor Sur-8 chr3R - chr3R_13225319_13227032 chr3R_13225324_13227032 chr3R_13227033_13227098;chr3R_13225253_13225318 100.00 100.00 100.00 100.00 97.40 100.00 100.00 99.29 100.00 98.81 98.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.42 98.61 99.09 99.18 98.18 100.00 100.00 99.00 96.15 98.81 100.00 98.99 98.00 98.85 99.20 100.00 100.00 100.00 98.31 100.00 99.19 98.33 97.95 100.00 99.20 100.00 100.00 100.00 98.16 100.00 100.00 100.00 98.98 96.97 100.00 100.00 98.55 100.00 100.00 K alternative_acceptor CG5455,I_chr3R_22287369_22288750 chr3R + chr3R_22292793_22292853;chr3R_22292793_22292855 chr3R_22292793_22292859 chr3R_22292336_22292792;chr3R_22292860_22293068 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.11 0.00 NA 0.00 0.00 0.00 0.00 5.00 6.67 0.00 0.00 16.67 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention shi,RI_chrX_15786633_15786860,RE_chrX_15793108_15795563 chrX + chrX_15790338_15790398 chrX_15790337_15790338;chrX_15790398_15790399 chrX_15790180_15790337;chrX_15790399_15790505 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Caki chr3R - chr3R_17617322_17617450 chr3R_17617321_17617322;chr3R_17617450_17617451 chr3R_17617253_17617321;chr3R_17617451_17617615 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3566 chrX - chrX_6169424_6170260 chrX_6169423_6169424;chrX_6170260_6170261 chrX_6169263_6169423;chrX_6170261_6170329 100.00 100.00 NA NA NA NA 100.00 100.00 100.00 87.50 NA 80.00 NA 91.67 90.00 100.00 NA NA 87.50 92.86 NA 100.00 100.00 100.00 NA NA 100.00 NA 93.75 100.00 100.00 90.91 100.00 100.00 NA NA NA NA 100.00 93.33 100.00 94.12 87.50 100.00 92.31 82.61 100.00 95.24 91.67 90.91 92.31 NA NA 100.00 100.00 100.00 100.00 94.74 K jcn_only_AD lap,I_chr3R_3017854_3019314 chr3R + chr3R_3018693_3019314 chr3R_3018735_3019314 chr3R_3019315_3019410;chr3R_3018443_3018692 100.00 100.00 100.00 98.44 NA 100.00 100.00 100.00 98.80 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 97.62 100.00 100.00 96.77 97.73 97.44 100.00 100.00 97.78 NA NA 96.97 97.37 100.00 96.15 100.00 100.00 96.67 95.45 97.14 93.75 89.09 95.83 97.40 100.00 100.00 100.00 97.83 100.00 96.88 98.39 91.67 100.00 95.45 100.00 100.00 98.08 100.00 96.88 100.00 K intron_retention dmt,psnoRNA:dmt-a chr3R + chr3R_5539304_5539588 chr3R_5539303_5539304;chr3R_5539588_5539589 chr3R_5537472_5539303;chr3R_5539589_5540397 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 1.09 0.00 0.00 0.00 2.53 0.00 0.00 0.00 1.04 0.00 2.56 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD AIF chr2L + chr2L_2152466_2152662;chr2L_2152463_2152662 chr2L_2152271_2152662 chr2L_2152663_2152944;chr2L_2152233_2152270 97.29 100.00 96.43 93.10 91.67 100.00 94.12 100.00 98.51 96.43 100.00 92.86 95.00 100.00 100.00 96.77 NA 97.44 95.65 100.00 100.00 85.71 100.00 98.21 93.33 96.15 91.11 94.74 96.30 95.92 100.00 100.00 97.92 97.44 100.00 100.00 94.67 95.83 96.55 96.00 89.29 98.41 96.00 85.19 95.24 100.00 95.45 NA 95.56 NA 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 K intron_retention CG3566 chrX - chrX_6170330_6170402 chrX_6170329_6170330;chrX_6170402_6170403 chrX_6170261_6170329;chrX_6170403_6170491 1.14 0.00 1.19 0.00 0.00 0.00 2.56 0.76 0.97 1.45 0.00 0.98 1.41 0.00 2.29 0.00 0.00 0.00 0.00 1.41 0.00 6.90 0.00 1.23 2.00 0.00 1.63 3.33 5.33 0.75 2.63 0.00 0.59 1.91 0.00 3.23 0.83 1.32 1.14 3.29 2.44 1.59 0.00 0.00 1.34 2.73 0.00 1.90 2.21 0.00 2.70 1.75 1.67 2.80 0.00 1.46 0.00 0.00 N intron_retention PNGase,I_chr2R_1906759_1906817,I_chr2R_1906899_1906977 chr2R + chr2R_1907055_1907113 chr2R_1907054_1907055;chr2R_1907113_1907114 chr2R_1906978_1907054;chr2R_1907114_1907168 100.00 NA 100.00 100.00 NA NA 100.00 72.41 75.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA NA 100.00 NA 100.00 100.00 K alternative_acceptor Sap-r,E_chr3R_26711286_26714646,I_chr3R_26712627_26713553,I_chr3R_26712627_26714606,RI_chr3R_26713323_26714382 chr3R - chr3R_26712627_26714382 chr3R_26713323_26714382 chr3R_26714383_26714461;chr3R_26712527_26712626 0.09 0.10 0.08 0.06 0.10 0.09 0.07 0.12 0.14 0.00 0.11 0.10 0.10 0.11 0.08 0.08 0.13 0.20 0.10 0.14 0.11 0.16 0.07 0.07 0.00 0.09 0.16 0.19 0.08 0.00 0.09 0.00 0.00 0.06 0.12 0.10 0.08 0.00 0.08 0.13 0.00 0.10 0.13 0.09 0.00 0.10 0.00 0.09 0.11 0.13 0.09 0.00 0.00 0.00 0.07 0.15 0.09 0.06 K alternative_acceptor CG14235,noncoding_24847,CG18809,noncoding_24848 chrX - chrX_19637712_19638294 chrX_19637740_19638294 chrX_19638295_19638317;chrX_19637634_19637711 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 98.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 96.77 100.00 100.00 97.62 100.00 100.00 100.00 96.55 100.00 100.00 100.00 97.92 100.00 97.14 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 96.30 100.00 100.00 K intron_retention CG17181 chr3L - chr3L_585466_588962 chr3L_585465_585466;chr3L_588962_588963 chr3L_585017_585465;chr3L_588963_589655 8.57 NA 0.00 9.52 7.14 NA NA 11.11 9.68 NA NA 12.50 NA NA NA NA NA NA NA 0.00 0.00 21.43 9.52 0.00 33.33 NA 6.25 NA 11.11 8.33 15.38 0.00 5.00 13.64 0.00 5.88 23.53 NA 5.26 0.00 11.76 8.57 NA 0.00 NA 11.76 NA 12.50 NA NA NA NA NA NA NA NA NA NA K intron_retention betaTub97EF chr3R - chr3R_23795550_23798642 chr3R_23795549_23795550;chr3R_23798642_23798643 chr3R_23795382_23795549;chr3R_23798643_23798872 0.00 0.00 0.00 0.00 0.78 0.72 0.00 0.66 0.87 0.00 0.81 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 1.05 0.00 1.13 2.22 0.00 0.00 0.57 0.00 0.00 0.84 0.65 0.00 0.00 0.00 0.73 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.70 0.00 0.96 0.00 0.00 0.00 0.66 0.00 K intron_retention Tango5,noncoding_22970,I_chrX_10659836_10661185 chrX - chrX_10656468_10657748 chrX_10656467_10656468;chrX_10657748_10657749 chrX_10656442_10656467;chrX_10657749_10657812 97.91 100.00 100.00 88.89 NA NA 95.83 100.00 100.00 NA NA 93.33 NA 100.00 90.00 100.00 NA NA 100.00 94.44 NA 100.00 NA 90.00 NA NA 100.00 100.00 NA NA NA NA NA 93.33 NA 88.89 100.00 NA NA NA NA 90.91 NA NA NA 88.89 NA NA 92.31 NA 100.00 NA NA NA NA NA 87.50 NA K intron_retention Caf1,mRpS10 chr3R + chr3R_11051637_11051687 chr3R_11051636_11051637;chr3R_11051687_11051688 chr3R_11051568_11051636;chr3R_11051688_11051756 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 2.92 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Eph,I_chr4_631523_634240,I_chr4_631555_631910,I_chr4_631643_631910,I_chr4_639690_640473,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_631555_631910;chr4_631643_631910 chr4_631523_631910 chr4_631911_632010;chr4_631455_631522 97.75 NA 95.65 100.00 NA 100.00 100.00 97.73 95.59 NA NA 98.21 90.62 100.00 100.00 98.78 100.00 100.00 96.15 96.15 NA NA 100.00 100.00 NA NA 92.59 NA NA NA 96.77 NA NA 96.67 100.00 NA NA NA NA 97.14 NA 97.78 96.15 NA NA NA NA 88.89 96.43 NA 96.00 NA NA NA 100.00 NA NA NA K alternative_acceptor tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563503_565232;chr3R_563461_565232 chr3R_563485_565232 chr3R_565233_565290;chr3R_563195_563460 14.29 10.00 5.88 2.56 5.26 23.53 18.18 6.67 6.56 23.08 6.25 4.76 10.00 13.64 5.00 14.29 6.25 10.53 8.00 4.44 16.67 10.53 36.84 33.33 18.18 9.52 NA 11.11 28.57 33.33 3.57 20.00 20.00 11.43 NA 27.27 10.71 28.57 14.29 14.29 25.00 8.70 14.29 14.29 18.18 25.00 NA 20.00 4.65 16.67 26.92 5.56 36.36 NA 3.57 22.22 25.00 18.75 K intron_retention MB8.chr3R.pasa.66,CG1104,I_chr3R_2904452_2904543 chr3R - chr3R_2897584_2897637 chr3R_2897583_2897584;chr3R_2897637_2897638 chr3R_2897343_2897583;chr3R_2897638_2898296 0.00 0.00 0.00 0.00 NA 4.17 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RhoGAP68F,RI_chr3L_12133229_12134100 chr3L + chr3L_12134478_12134540 chr3L_12134477_12134478;chr3L_12134540_12134541 chr3L_12134352_12134477;chr3L_12134541_12134576 0.00 0.00 NA NA NA NA 4.76 10.53 5.88 NA NA 9.52 NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA 10.53 NA NA 11.76 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA NA 0.00 NA 0.00 NA 0.00 NA NA NA NA 0.00 NA NA K cassette kst,I_chr3L_3365752_3365816,I_chr3L_3367008_3367514 chr3L + chr3L_3366311_3367514 chr3L_3366311_3366443;chr3L_3366774_3367514 chr3L_3366444_3366773 chr3L_3366200_3366310;chr3L_3367515_3367614 66.45 66.67 68.44 94.97 69.05 72.46 46.29 50.61 62.98 67.18 51.63 67.00 36.73 56.63 57.38 94.00 56.85 46.83 58.24 57.60 62.62 81.45 74.69 69.49 70.55 52.17 67.12 77.92 75.00 84.91 61.01 69.77 68.06 57.46 65.10 66.42 75.37 73.29 68.68 68.88 60.58 61.01 56.36 60.99 60.37 66.93 64.96 65.26 53.87 72.65 66.48 74.54 64.48 66.45 50.63 67.76 66.67 65.81 K jcn_only_AD cul-2,RI_chr2L_21657668_21657832,noncoding_4226,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21657777_21657832;chr2L_21657668_21657832 chr2L_21657742_21657832 chr2L_21657833_21657932;chr2L_21657659_21657667 23.18 24.00 27.59 44.44 37.14 23.68 11.57 30.99 32.74 18.87 23.81 23.58 35.00 39.53 29.51 31.91 30.77 33.33 28.07 35.21 35.42 2.91 8.20 13.04 8.86 37.50 10.32 2.42 6.67 6.61 39.24 32.99 9.70 37.14 12.20 23.18 15.00 12.50 12.00 9.24 3.38 27.96 47.50 3.17 9.28 14.69 19.05 14.16 29.09 16.53 15.29 12.90 25.49 17.58 37.80 22.83 18.00 30.38 K alternative_donor SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_16982134_16983159 chr3R_16982199_16983159 chr3R_16983160_16983379;chr3R_16982126_16982133 0.00 NA NA 0.00 NA NA 5.88 4.35 3.85 NA NA 0.00 0.00 12.50 NA 5.56 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 5.56 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K jcn_only_AA CG4078,I_chrX_5645012_5645067,F_chrX_5650884_5651894 chrX + chrX_5645012_5645096 chrX_5645012_5645067 chrX_5644912_5645011;chrX_5645097_5645167 4.76 NA NA NA NA NA NA NA 10.71 NA NA 9.52 NA NA NA NA NA NA NA NA NA NA 7.41 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 4.17 NA 4.55 NA 0.00 NA 4.76 NA NA NA NA 5.00 NA NA NA NA NA NA 16.67 N intron_retention CG18228 chr3R - chr3R_4087428_4087522 chr3R_4087427_4087428;chr3R_4087522_4087523 chr3R_4085496_4087427;chr3R_4087523_4087669 31.82 NA NA NA NA NA 22.22 50.00 31.25 NA NA 43.75 NA NA NA 31.82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG7530,I_chr3R_10553050_10555615,eff chr3R - chr3R_10553050_10556232 chr3R_10553049_10553050;chr3R_10556232_10556233 chr3R_10552950_10553049;chr3R_10556233_10556351 0.00 0.00 0.00 0.00 0.00 0.00 2.99 1.59 1.77 0.00 0.00 0.00 0.00 0.00 0.00 4.08 2.20 1.61 1.09 1.73 0.00 NA 1.32 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.60 2.11 0.00 0.00 2.35 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 K alternative_acceptor stai,I_chr2L_6100550_6101701,I_chr2L_6110225_6121773 chr2L + chr2L_6100550_6101701 chr2L_6100550_6101693 chr2L_6100450_6100549;chr2L_6101702_6101798 100.00 100.00 100.00 99.16 85.71 100.00 100.00 100.00 98.51 100.00 95.24 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 98.95 100.00 100.00 100.00 100.00 100.00 97.83 100.00 87.50 100.00 100.00 100.00 100.00 100.00 98.68 100.00 100.00 100.00 NA 96.77 100.00 93.33 98.46 100.00 100.00 100.00 100.00 98.04 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 K alternative_donor CG2990 chrX + chrX_9905147_9905206 chrX_9905150_9905206 chrX_9905207_9906244;chrX_9904536_9905146 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K multi_cassette CG11266,RI_chr2L_7033019_7033182,RI_chr2L_7033019_7034180,RI_chr2L_7033019_7034764,I_chr2L_7034274_7034764,I_chr2L_7034274_7035406,RI_chr2L_7034911_7035074,I_chr2L_7051093_7051366 chr2L + chr2L_7033019_7035406 chr2L_7033019_7034198;chr2L_7034274_7034483;chr2L_7034694_7034764;chr2L_7034911_7035406 chr2L_7034199_7034273;chr2L_7034484_7034693;chr2L_7034765_7034910 chr2L_7032919_7033018;chr2L_7035407_7035506 7.28 4.88 11.54 2.38 4.35 10.53 6.25 21.05 11.27 4.44 10.53 15.25 25.00 15.38 10.00 20.00 16.67 6.90 13.64 8.11 5.56 2.90 9.76 8.89 2.22 0.00 5.56 3.33 3.90 5.13 27.27 6.12 2.99 17.95 7.32 NA 3.92 6.25 8.89 7.00 3.61 7.69 21.05 10.81 1.98 7.23 4.65 7.63 17.31 5.56 8.33 8.57 2.22 6.25 23.81 8.11 2.94 5.97 K intron_retention CG12213 chr3R - chr3R_7792009_7792176 chr3R_7792008_7792009;chr3R_7792176_7792177 chr3R_7791324_7792008;chr3R_7792177_7792208 0.00 0.00 0.00 10.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 9.09 2.94 0.00 0.00 0.00 0.00 0.00 2.78 2.94 0.00 0.00 6.45 0.00 0.00 6.45 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.76 K jcn_only_AA CG8289 chrX - chrX_17529008_17529374 chrX_17529011_17529374 chrX_17529375_17530118;chrX_17528607_17529007 98.66 100.00 98.39 96.43 100.00 100.00 98.59 100.00 98.06 NA 100.00 96.97 100.00 97.96 98.33 98.85 98.25 100.00 98.67 97.81 100.00 94.44 98.28 98.41 96.08 98.80 98.44 100.00 100.00 100.00 100.00 100.00 100.00 99.13 100.00 100.00 98.65 100.00 100.00 98.55 96.97 98.59 100.00 100.00 100.00 95.83 100.00 97.78 97.39 98.55 96.92 96.15 97.50 100.00 98.92 98.53 95.35 97.56 K multi_cassette CG33558,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,I_chr2R_2820149_2820628,EI_chr2R_2820947_2821570,CREI_chr2R_2832933_2850384 chr2R - chr2R_2817876_2821570 chr2R_2817876_2818978;chr2R_2820203_2820628;chr2R_2821433_2821570 chr2R_2818979_2820202;chr2R_2820629_2821432 chr2R_2817851_2817875;chr2R_2821571_2821639 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 K intron_retention CG18445,I_chr2R_5927355_5927472 chr2R - chr2R_5927078_5927130 chr2R_5927077_5927078;chr2R_5927130_5927131 chr2R_5926909_5927077;chr2R_5927131_5927354 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.64 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N mutually_exclusive Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16107821_16109131,chr3L_16109342_16110644 chr3L_16107821_16108768,chr3L_16108931_16110644 chr3L_16109132_16109341 chr3L_16108769_16108930 chr3L_16107721_16107820;chr3L_16110645_16111208 87.50 87.50 NA 88.89 100.00 88.89 90.00 83.33 85.71 75.00 100.00 87.50 75.00 NA NA NA 100.00 NA NA 94.44 100.00 80.00 90.91 92.31 88.89 NA 88.89 83.33 12.50 85.71 NA 75.00 85.71 85.71 80.00 93.75 95.83 90.91 91.67 85.71 85.71 88.89 100.00 88.89 85.71 83.33 NA 85.71 100.00 83.33 85.71 80.00 NA NA NA 88.89 NA 87.50 K intron_retention ps,I_chr3R_5269733_5270765 chr3R + chr3R_5270910_5270976 chr3R_5270909_5270910;chr3R_5270976_5270977 chr3R_5270766_5270909;chr3R_5270977_5271617 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.93 2.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Obp44a chr2R - chr2R_4022402_4022471 chr2R_4022401_4022402;chr2R_4022471_4022472 chr2R_4021870_4022401;chr2R_4022472_4022572 0.00 NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA 10.53 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 14.29 NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 3.85 K intron_retention CG14438 chrX + chrX_6662372_6662439 chrX_6662371_6662372;chrX_6662439_6662440 chrX_6661217_6662371;chrX_6662440_6663086 0.00 0.00 0.00 2.99 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 3.92 11.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 K intron_retention cwo,noncoding_15870,chr3R_6215619_6216520.0,chr3R_6216827_6217291.0,chr3R_6217556_6219555.0,chr3R_6219984_6221958.0 chr3R + chr3R_6215160_6221958 chr3R_6215159_6215160;chr3R_6221958_6221959 chr3R_6214846_6215159;chr3R_6221959_6222030 50.00 NA NA NA NA NA 58.33 53.33 43.75 NA NA NA NA NA NA 54.55 NA NA NA NA NA 47.37 47.62 72.73 58.33 NA 58.33 NA 25.00 62.50 NA NA 52.17 46.15 66.67 NA 63.64 NA 70.00 59.09 32.00 50.00 NA 33.33 10.53 26.67 37.50 58.82 50.00 40.00 80.00 NA 25.00 NA NA NA NA 37.04 K intron_retention Smr,I_chrX_12625852_12636351,REI_chrX_12635675_12636351 chrX - chrX_12626434_12635481 chrX_12626433_12626434;chrX_12635481_12635482 chrX_12624963_12626433;chrX_12635482_12635489 19.09 14.29 17.65 15.91 NA NA 23.08 16.67 23.68 NA NA 24.14 9.52 27.78 25.00 30.00 NA NA 17.65 15.00 12.50 NA 21.05 10.53 NA NA NA NA NA NA NA NA NA 26.09 18.18 NA NA NA NA NA NA 15.15 33.33 NA NA 30.77 NA NA 20.00 NA 21.43 NA NA NA 0.00 NA NA NA K intron_retention CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20824494_20825658 chr2L_20824493_20824494;chr2L_20825658_20825659 chr2L_20824482_20824493;chr2L_20825659_20825758 70.18 86.05 47.27 55.06 46.15 66.67 55.56 38.22 51.32 90.62 70.18 60.75 40.45 51.61 44.35 57.41 33.33 60.53 43.00 53.18 58.06 93.69 97.22 96.55 97.78 69.51 96.80 97.32 89.90 85.25 64.36 70.42 51.32 36.07 91.03 96.63 92.78 98.86 92.04 82.61 78.33 43.98 37.33 86.42 50.86 83.02 91.18 63.64 54.60 95.16 96.00 96.43 91.03 99.12 45.53 86.00 87.76 49.43 K intron_retention Fps85D,I_chr3R_5194729_5194776,I_chr3R_5216796_5218450 chr3R - chr3R_5199390_5199500 chr3R_5199389_5199390;chr3R_5199500_5199501 chr3R_5199053_5199389;chr3R_5199501_5199597 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.26 0.00 2.13 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 K intron_retention Dif,dorsal,RI_chr2L_17438018_17439189,I_chr2L_17442335_17442399,FI_chr2L_17449369_17450215,RI_chr2L_17450002_17450219 chr2L - chr2L_17438213_17439189 chr2L_17438212_17438213;chr2L_17439189_17439190 chr2L_17438150_17438212;chr2L_17439190_17439224 8.51 8.11 8.82 26.32 7.41 11.94 38.24 16.87 9.80 21.43 23.68 8.51 37.04 3.77 6.35 14.29 8.51 12.50 10.94 11.38 21.95 3.60 8.11 11.49 8.51 10.34 14.77 22.22 11.90 7.04 14.10 6.67 3.74 10.34 4.76 26.32 6.31 5.56 5.15 6.90 7.41 11.02 9.80 4.12 8.00 4.04 9.41 5.13 8.18 10.00 7.76 11.29 4.08 3.03 12.90 7.95 7.35 4.88 N mutually_exclusive crol,I_chr2L_11799403_11802904 chr2L - chr2L_11799403_11802286,chr2L_11803675_11803784 chr2L_11799403_11800154,chr2L_11800323_11803784 chr2L_11802287_11803674 chr2L_11800155_11800322 chr2L_11799303_11799402;chr2L_11803785_11803898 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA 95.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG30193,CG30190 chr2R + chr2R_18812899_18813071 chr2R_18813008_18813071 chr2R_18813072_18813135;chr2R_18812672_18812898 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 85.71 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K multi_cassette CG32685,CREI_chrX_9967445_9972518 chrX - chrX_9967445_9972518 chrX_9967445_9967909;chrX_9968099_9968170;chrX_9968360_9968426;chrX_9968929_9969008;chrX_9969104_9969176;chrX_9969661_9972518 chrX_9967910_9968098;chrX_9968171_9968359;chrX_9968427_9968928;chrX_9969009_9969103;chrX_9969177_9969660 chrX_9967345_9967444;chrX_9972519_9972618 90.91 95.24 86.36 90.32 93.33 94.74 100.00 90.24 100.00 100.00 100.00 89.19 87.50 100.00 100.00 81.08 85.71 90.48 95.83 91.23 94.44 67.86 93.94 89.29 94.12 100.00 88.89 81.25 91.67 90.00 78.79 64.00 35.00 89.47 77.78 100.00 88.57 100.00 93.94 85.11 82.61 90.00 94.12 88.57 89.29 79.07 91.67 85.37 90.91 83.78 91.18 94.44 95.24 91.30 96.55 100.00 93.94 73.91 K intron_retention CG17124,E_chr2L_10745700_10745781,RI_chr2L_10746079_10753316,I_chr2L_10753685_10755903 chr2L - chr2L_10745710_10745781 chr2L_10745709_10745710;chr2L_10745781_10745782 chr2L_10745635_10745709;chr2L_10745782_10745881 0.00 0.00 NA NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA 7.14 NA 0.00 0.00 0.00 0.00 NA 0.00 2.17 0.00 0.00 NA 0.00 0.00 NA NA 6.67 NA NA 0.00 9.52 0.00 11.76 NA 5.56 0.00 0.00 0.00 0.00 0.00 4.76 0.00 NA NA NA NA 0.00 0.00 0.00 K jcn_only_AA Anxb11,I_chrX_16314152_16314405,I_chrX_16314152_16315813 chrX - chrX_16313083_16316199 chrX_16314152_16316199 chrX_16316200_16316269 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15766648_15766724 chrX_15766647_15766648;chrX_15766724_15766725 chrX_15766069_15766647;chrX_15766725_15769238 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 3.03 3.45 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 2.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754284_15755409 chrX_15754283_15754284;chrX_15755409_15755410 chrX_15754256_15754283;chrX_15755410_15755509 18.06 12.50 12.79 15.34 18.06 12.33 14.37 19.23 20.77 21.43 20.69 31.58 37.89 25.22 18.75 14.87 17.07 19.40 23.33 16.29 15.00 11.88 14.91 23.19 13.85 22.67 19.19 19.51 20.75 24.24 17.21 15.79 30.51 17.71 18.42 36.76 20.29 12.50 11.67 17.53 22.45 22.89 27.08 12.39 12.00 24.39 16.90 18.84 15.00 15.38 19.23 12.12 12.50 18.03 18.18 11.48 7.59 20.00 K cassette mld chr3R + chr3R_20445827_20446100 chr3R_20445827_20445891;chr3R_20445958_20446100 chr3R_20445892_20445957 chr3R_20441773_20445826;chr3R_20446101_20446835 90.70 80.95 100.00 94.74 100.00 84.62 77.78 74.29 79.55 78.57 100.00 88.46 87.50 100.00 94.44 94.44 94.12 78.95 94.74 75.51 91.67 92.86 65.71 77.42 75.00 60.00 93.75 100.00 66.67 78.57 100.00 83.33 100.00 86.21 75.00 100.00 90.70 95.45 90.91 96.00 87.50 82.86 93.75 95.65 92.86 94.44 90.00 88.24 87.50 93.55 82.76 85.71 100.00 82.35 100.00 87.50 90.91 100.00 K intron_retention CG11807 chr2R + chr2R_11089337_11089398 chr2R_11089336_11089337;chr2R_11089398_11089399 chr2R_11089003_11089336;chr2R_11089399_11089632 0.00 NA NA 3.85 NA NA 0.00 4.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 4.35 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K cassette CG17737,I_chr3L_3223527_3224313,I_chr3L_3223650_3223769,I_chr3L_3223943_3224313 chr3L + chr3L_3223527_3224313 chr3L_3223527_3223769;chr3L_3223928_3224313 chr3L_3223770_3223927 chr3L_3223475_3223526;chr3L_3224314_3224413 99.88 100.00 99.84 97.02 100.00 100.00 99.88 99.88 99.91 99.71 100.00 99.89 100.00 99.78 99.84 100.00 100.00 100.00 100.00 99.85 100.00 99.60 99.87 99.88 99.76 99.24 100.00 99.76 100.00 99.77 100.00 100.00 100.00 99.88 100.00 98.34 99.88 99.84 100.00 99.84 99.74 99.90 100.00 100.00 100.00 100.00 99.86 100.00 99.90 99.87 99.84 100.00 99.85 99.87 100.00 99.87 99.83 99.86 K intron_retention Atpalpha,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16792336_16798894 chr3R_16792335_16792336;chr3R_16798894_16798895 chr3R_16792236_16792335;chr3R_16798895_16798994 88.56 100.00 NA 55.00 88.89 NA 90.91 84.62 85.00 NA 86.67 88.24 92.31 NA NA NA NA 90.00 NA 81.25 NA 83.33 90.91 90.00 90.91 100.00 93.33 69.23 NA NA NA NA NA 85.71 NA NA 81.82 NA 66.67 88.89 NA 82.35 100.00 NA NA NA NA NA 92.86 NA 70.00 NA NA NA 91.67 70.00 NA NA K intron_retention I_chrX_8971691_8972369,CG7246 chrX - chrX_8974832_8974888 chrX_8974831_8974832;chrX_8974888_8974889 chrX_8974528_8974831;chrX_8974889_8975062 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 NA 0.00 0.00 K jcn_only_AA CG6673,CG6662 chr3L - chr3L_8515419_8516500 chr3L_8516322_8516500 chr3L_8516501_8516593;chr3L_8514832_8515418 94.90 95.24 97.30 92.70 95.31 95.31 82.14 90.16 94.01 92.00 94.74 95.31 100.00 96.10 96.23 100.00 94.12 98.18 95.60 92.64 94.64 94.32 92.59 94.90 79.31 87.95 92.71 100.00 98.39 93.44 92.31 96.88 100.00 93.44 95.45 92.00 97.18 93.02 92.50 92.98 83.93 91.85 100.00 87.25 97.44 95.96 98.39 96.88 93.46 96.19 93.75 95.29 95.45 92.86 95.24 97.03 93.81 96.90 K intron_retention CG32594,noncoding_23729 chrX + chrX_14918494_14918582 chrX_14918493_14918494;chrX_14918582_14918583 chrX_14918488_14918493;chrX_14918583_14918773 92.86 NA NA 100.00 NA NA 92.86 90.91 92.86 NA NA 92.31 NA 90.91 NA 100.00 NA NA 100.00 100.00 NA 90.91 NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 91.67 NA 100.00 NA NA NA NA 92.31 NA NA 87.50 NA NA NA NA NA NA K alternative_donor coro,I_chr2R_2752880_2760038,I_chr2R_2754447_2754986,I_chr2R_2754447_2755071 chr2R - chr2R_2754447_2760059 chr2R_2754447_2760038 chr2R_2754347_2754446;chr2R_2760060_2760138 90.00 92.11 87.76 86.76 91.11 84.21 93.22 88.89 89.92 89.74 92.31 87.78 89.19 95.35 90.48 93.55 91.89 88.68 94.44 89.91 90.91 91.84 85.71 89.71 88.64 87.93 93.55 89.66 83.93 94.67 91.67 92.86 88.50 89.66 87.10 85.37 89.41 89.39 86.36 93.68 97.37 89.34 92.50 88.54 85.25 96.30 93.88 95.83 91.18 90.00 90.14 84.09 92.50 92.50 91.55 90.20 90.00 92.00 K intron_retention botv chr2R + chr2R_15020355_15020408 chr2R_15020354_15020355;chr2R_15020408_15020409 chr2R_15018059_15020354;chr2R_15020409_15021223 97.37 96.67 95.83 97.83 100.00 100.00 94.87 96.00 96.61 95.24 95.00 100.00 100.00 94.74 100.00 100.00 100.00 95.45 96.43 97.01 94.44 87.10 100.00 97.62 100.00 96.15 94.59 100.00 100.00 100.00 95.65 96.30 96.97 100.00 100.00 96.67 97.44 100.00 92.86 100.00 100.00 100.00 100.00 97.22 100.00 100.00 96.00 100.00 100.00 97.37 97.37 96.88 100.00 96.55 97.22 96.67 97.44 97.06 K jcn_only_AD Cf2 chr2L - chr2L_4879197_4880377 chr2L_4879197_4880293 chr2L_4878850_4879196;chr2L_4880378_4880472 14.08 5.41 26.32 5.17 11.43 9.76 22.92 13.79 10.98 NA 20.51 6.06 44.00 12.50 8.33 18.92 12.00 0.00 44.74 11.58 20.83 16.22 10.00 19.05 31.25 21.74 23.40 6.06 18.18 8.82 21.43 NA 16.07 15.56 13.33 18.52 21.43 20.00 13.56 5.88 NA 14.08 6.90 8.33 11.76 NA 25.00 25.00 17.28 7.14 11.90 19.23 NA NA 9.30 13.89 23.33 25.93 N alternative_donor Tsp39D chr2L + chr2L_21356513_21356739 chr2L_21356683_21356739 chr2L_21356740_21358273;chr2L_21356104_21356512 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG18094,swm chr2L + chr2L_19494499_19494559 chr2L_19494499_19494556 chr2L_19494033_19494498;chr2L_19494560_19495735 7.81 4.00 9.80 3.28 8.57 11.11 5.77 11.43 8.33 3.70 6.25 7.37 10.20 10.81 6.45 8.62 5.71 9.62 6.82 5.66 7.50 4.62 9.52 10.87 9.09 4.92 9.09 10.00 2.56 9.80 7.27 9.52 6.82 4.94 8.33 6.06 12.77 6.98 11.48 7.78 15.38 6.52 13.04 8.51 3.57 5.13 10.81 8.51 8.08 10.42 13.79 9.38 2.94 4.00 7.81 5.26 6.25 2.50 K jcn_only_AA CG8963,I_chr2R_12906431_12906583,I_chr2R_12906930_12906989 chr2R - chr2R_12906827_12906937;chr2R_12906855_12906937 chr2R_12906431_12906937 chr2R_12906938_12907019 0.00 0.00 4.00 0.00 NA 0.00 4.17 0.00 0.00 NA NA 0.00 0.00 0.00 4.76 0.00 3.45 NA 5.41 0.00 NA 11.43 0.00 0.00 NA NA NA 2.63 NA 0.00 0.00 NA 0.00 2.27 NA 4.55 4.17 0.00 NA 0.00 NA 2.38 0.00 0.00 NA 0.00 0.00 4.55 0.00 0.00 2.70 0.00 NA NA 4.17 NA 4.17 0.00 K intron_retention CG31150,Hmt-1 chr3R - chr3R_11678650_11678999 chr3R_11678649_11678650;chr3R_11678999_11679000 chr3R_11678450_11678649;chr3R_11679000_11679262 0.51 0.00 0.00 2.11 1.11 0.00 1.72 1.43 0.36 3.12 0.00 1.13 0.64 1.18 0.00 1.88 0.00 0.00 0.00 0.88 0.00 1.59 2.59 0.68 1.75 1.36 0.00 0.00 1.22 2.68 0.00 0.00 0.00 0.90 2.40 4.81 2.41 0.00 0.99 1.89 2.17 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.96 0.00 0.93 0.00 0.00 0.00 0.49 1.20 0.00 0.51 K alternative_donor shep,I_chr3L_5157070_5160067,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5160160_5161349 chr3L_5160160_5161343 chr3L_5160068_5160159;chr3L_5161350_5161402 92.10 96.00 92.45 83.56 96.55 85.00 87.14 86.84 89.01 92.86 94.74 94.37 88.24 95.35 92.45 98.61 91.67 88.89 91.89 88.89 90.62 82.76 80.56 95.45 95.24 89.47 96.30 91.67 94.74 91.67 90.24 90.91 86.84 87.50 88.00 96.30 95.83 95.00 95.83 100.00 76.47 91.67 93.02 95.00 94.44 94.12 84.00 NA 86.49 94.12 93.94 90.91 94.74 80.00 94.23 92.31 92.31 81.82 K alternative_donor myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_716153_716322;chr4_716153_716627 chr4_716153_716613 chr4_716072_716152;chr4_716628_716661 20.00 25.00 11.11 35.29 NA 25.00 20.00 16.67 15.79 NA 20.00 19.35 36.84 25.00 14.29 18.97 33.33 14.29 33.33 18.75 25.00 NA 25.00 25.00 25.00 28.57 NA NA NA NA 18.18 NA NA 23.53 NA NA NA NA NA 0.00 NA 21.74 23.08 20.00 NA NA 0.00 0.00 10.81 NA 11.11 16.67 NA NA 22.22 NA NA NA K alternative_donor CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8163458_8173015 chr2L_8163519_8173015 chr2L_8173016_8173209;chr2L_8163297_8163457 100.00 97.56 100.00 98.92 94.87 100.00 97.92 99.24 100.00 100.00 98.04 99.13 100.00 100.00 98.44 99.06 100.00 100.00 98.90 98.73 98.04 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.23 97.44 100.00 97.44 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 98.35 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 K intron_retention CG30152 chr2R + chr2R_16559775_16559844 chr2R_16559774_16559775;chr2R_16559844_16559845 chr2R_16559624_16559774;chr2R_16559845_16560057 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 1.39 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG13923,CG12022 chr3L + chr3L_1805459_1805530 chr3L_1805458_1805459;chr3L_1805530_1805531 chr3L_1805010_1805458;chr3L_1805531_1805708 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 4.35 NA NA 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.85 15.15 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 3.12 0.00 K cassette kuz,E_chr2L_13550294_13551106,CE_chr2L_13558833_13594255,F_chr2L_13635998_13637287,RI_chr2L_13636519_13636577,I_chr2L_13636762_13637287 chr2L + chr2L_13636214_13637287 chr2L_13636214_13636383;chr2L_13636762_13637287 chr2L_13636384_13636761 chr2L_13636100_13636213;chr2L_13637288_13637387 82.43 76.32 91.11 93.08 52.63 47.83 82.43 83.33 79.73 85.25 70.49 98.28 84.21 91.43 74.36 97.80 70.59 92.54 78.38 97.46 78.69 72.17 71.01 66.67 81.82 90.48 84.78 85.71 91.14 97.40 95.12 89.47 93.30 81.67 80.00 96.08 64.29 69.77 71.15 95.45 98.25 75.64 100.00 90.20 95.00 95.45 70.00 97.48 70.67 76.67 68.89 80.00 74.47 77.27 84.85 61.29 77.14 96.10 K cassette Crk,RI_chr4_231302_233315,RI_chr4_231307_232217,I_chr4_231307_232253 chr4 + chr4_231307_233253 chr4_231307_232264;chr4_232449_233253 chr4_232265_232448 chr4_231208_231306;chr4_233254_233355 86.52 92.86 83.33 76.19 83.33 76.92 86.84 88.89 90.91 83.33 91.67 82.05 90.91 90.48 83.33 88.57 86.36 100.00 86.67 87.10 100.00 94.12 78.57 93.33 66.67 63.16 88.89 NA 34.78 81.25 93.33 90.00 94.44 86.96 73.68 90.91 NA NA 85.71 89.47 68.97 85.71 81.82 72.22 51.72 75.76 100.00 79.41 80.85 88.24 100.00 83.33 85.71 77.78 94.44 86.67 91.67 68.85 K multi_cassette Pten,I_chr2L_10256507_10256803,F_chr2L_10259663_10260253 chr2L - chr2L_10256507_10257777 chr2L_10256507_10256909;chr2L_10257123_10257394;chr2L_10257717_10257777 chr2L_10256910_10257122;chr2L_10257395_10257716 chr2L_10256469_10256506;chr2L_10257778_10257993 83.33 83.33 100.00 62.50 NA 83.33 88.89 88.24 90.00 66.67 100.00 90.00 100.00 85.71 80.00 80.00 83.33 80.00 77.78 91.67 75.00 NA 87.50 80.00 75.00 100.00 85.71 66.67 NA 100.00 87.50 83.33 100.00 80.00 77.78 42.86 100.00 NA 71.43 87.50 75.00 92.31 87.50 83.33 75.00 78.57 55.56 75.00 86.67 88.89 81.82 80.00 75.00 83.33 85.71 100.00 66.67 63.64 K intron_retention CG6903 chrX + chrX_4814303_4814362 chrX_4814302_4814303;chrX_4814362_4814363 chrX_4814128_4814302;chrX_4814363_4815024 3.64 1.39 3.23 5.71 0.00 3.23 9.68 2.22 3.64 0.00 0.00 4.48 4.17 0.00 8.57 9.09 5.00 3.57 0.00 5.45 4.17 5.21 5.49 4.35 0.00 9.09 13.56 10.34 7.89 3.92 4.35 0.00 2.00 4.65 0.00 6.82 1.89 5.48 3.70 4.82 0.00 3.39 3.85 0.00 5.56 3.57 0.00 6.67 5.26 1.28 3.37 0.00 0.00 2.94 0.00 2.53 0.00 4.35 K jcn_only_AA cic,RI_chr3R_16122222_16123529 chr3R + chr3R_16122222_16123529;chr3R_16122222_16122818 chr3R_16122222_16124105 chr3R_16122122_16122221;chr3R_16124106_16124254 100.00 100.00 100.00 100.00 100.00 99.12 98.03 100.00 100.00 100.00 100.00 99.65 100.00 99.03 100.00 100.00 100.00 99.41 100.00 100.00 100.00 99.11 99.20 99.41 100.00 99.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.10 99.35 99.62 100.00 100.00 98.52 100.00 99.66 100.00 97.14 97.78 99.13 100.00 99.46 100.00 100.00 100.00 98.94 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention ana1 chr3R + chr3R_20358324_20358400 chr3R_20358323_20358324;chr3R_20358400_20358401 chr3R_20357591_20358323;chr3R_20358401_20358524 2.27 NA 0.00 17.39 NA NA 7.41 0.00 0.00 NA 0.00 0.00 NA NA 7.69 0.00 NA 0.00 NA 5.88 NA 0.00 6.25 NA NA NA 12.50 NA NA NA 12.50 NA 0.00 9.09 NA NA 4.55 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA NA 6.67 NA 25.00 NA NA NA 6.67 NA NA NA K intron_retention CG6664 chr3L - chr3L_17008367_17008842 chr3L_17008366_17008367;chr3L_17008842_17008843 chr3L_17008241_17008366;chr3L_17008843_17008976 3.03 4.26 4.76 3.08 4.35 4.76 5.88 3.39 2.78 0.00 0.00 1.43 2.78 6.25 1.89 5.56 14.29 6.25 0.00 5.06 5.41 6.82 4.92 1.89 3.03 4.35 6.67 13.16 5.77 3.64 5.88 0.00 1.05 1.72 5.41 5.00 0.00 0.00 0.00 2.50 2.70 2.78 0.00 0.00 2.38 0.00 0.00 2.35 4.11 2.44 5.77 4.44 0.00 0.00 3.77 0.00 2.44 4.41 K multi_cassette dlg1,I_chrX_11290137_11290410,I_chrX_11298230_11299306 chrX + chrX_11290137_11299306 chrX_11290137_11291857;chrX_11291946_11292002;chrX_11292217_11292278;chrX_11292693_11292752;chrX_11292856_11299306 chrX_11291858_11291945;chrX_11292003_11292216;chrX_11292279_11292692;chrX_11292753_11292855 chrX_11290037_11290136;chrX_11299307_11299406 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention kay,noncoding_19957,R_chr3R_25614823_25615439,E_chr3R_25616137_25617114 chr3R + chr3R_25593310_25617114 chr3R_25593309_25593310;chr3R_25617114_25617115 chr3R_25593214_25593309;chr3R_25617115_25617214 11.84 9.26 14.29 14.04 7.69 5.13 15.15 15.09 11.84 24.14 23.08 18.75 18.52 18.52 12.00 15.79 26.47 19.51 14.71 16.90 27.78 12.04 9.09 9.41 4.76 8.33 10.00 14.55 16.39 9.52 9.09 13.33 11.32 12.96 13.95 13.16 6.77 6.94 9.47 6.25 7.69 14.08 7.14 5.26 8.89 5.88 5.26 10.64 12.12 7.94 7.45 7.50 0.00 5.26 12.20 6.00 15.15 15.79 K alternative_acceptor egr,I_chr2R_5970832_5970930,I_chr2R_5970999_5971058 chr2R + chr2R_5970999_5971078 chr2R_5970999_5971058 chr2R_5970931_5970998;chr2R_5971079_5971158 0.00 0.00 0.66 0.49 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.43 0.79 0.00 0.00 0.54 0.00 0.00 0.62 0.00 0.00 0.46 0.40 0.00 0.00 K intron_retention Aats-gly,CG6854 chr3L + chr3L_15088286_15088373 chr3L_15088285_15088286;chr3L_15088373_15088374 chr3L_15088282_15088285;chr3L_15088374_15090790 2.71 6.06 2.90 2.05 1.92 1.96 2.94 2.76 2.34 0.00 3.09 1.18 6.45 2.67 1.72 4.27 2.56 1.87 2.50 1.59 2.25 4.26 10.53 9.09 13.89 3.09 25.64 12.36 2.69 3.54 3.39 1.27 1.77 1.44 3.39 6.67 2.70 6.12 4.29 1.61 2.29 2.71 1.41 2.42 0.00 1.67 0.00 0.57 1.99 7.27 6.67 3.92 3.28 8.00 3.01 7.69 8.82 0.84 K alternative_donor CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516706_21517821;chr3L_21516330_21517821;chr3L_21516399_21517821;chr3L_21516722_21517821;chr3L_21516501_21517821;chr3L_21516918_21517821;chr3L_21516343_21517821;chr3L_21516728_21517821 chr3L_21517168_21517821 chr3L_21517822_21517920;chr3L_21516311_21516329 12.50 12.50 9.09 17.65 10.00 7.14 13.04 4.55 15.00 33.33 42.86 17.65 16.67 9.09 0.00 15.38 16.67 14.29 11.11 8.33 27.27 16.67 8.33 12.50 0.00 0.00 12.50 11.11 7.69 33.33 5.00 33.33 7.69 11.11 0.00 25.00 10.00 0.00 14.29 19.05 0.00 14.81 12.50 15.38 25.00 0.00 20.00 22.22 18.18 25.00 20.00 0.00 0.00 0.00 18.18 0.00 0.00 0.00 K cassette CG17471,RI_chr4_1213397_1214333,RI_chr4_1213397_1216053,RI_chr4_1214248_1214333,I_chr4_1214293_1214333,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1213397_1214333 chr4_1213397_1214185;chr4_1214281_1214333 chr4_1214186_1214280 chr4_1213332_1213396;chr4_1214334_1214402 90.91 89.74 93.62 80.65 100.00 94.59 89.23 89.19 91.59 90.00 94.74 90.91 100.00 94.44 95.00 92.65 90.24 84.21 91.11 87.80 96.15 95.65 100.00 97.14 88.89 88.24 90.32 90.91 92.31 78.57 82.69 87.18 89.74 90.54 90.62 85.00 96.43 84.62 89.66 92.16 90.00 94.03 96.88 90.00 94.74 89.71 97.87 88.37 93.90 96.08 97.44 90.62 90.91 87.10 91.84 97.78 83.67 83.82 K cassette CG32138 chr3L + chr3L_14062028_14063021;chr3L_14062028_14062991 chr3L_14062028_14062185;chr3L_14062497_14063021,chr3L_14062497_14062991 chr3L_14062186_14062496 chr3L_14061908_14062027;chr3L_14063022_14063741 26.13 21.86 29.32 9.97 17.37 25.32 28.84 30.15 25.32 42.03 16.08 58.87 33.15 21.14 25.56 36.41 26.13 50.00 28.50 29.41 24.37 23.88 23.24 21.48 36.48 33.85 25.76 23.23 19.26 22.96 45.89 31.30 34.62 30.38 31.54 32.73 17.97 19.23 26.94 24.37 42.34 29.00 29.48 23.75 37.70 29.07 20.77 46.30 27.12 25.22 24.83 22.84 21.08 24.57 29.34 18.59 25.16 38.41 K intron_retention CG40228,noncoding_14406,RI_chr3LHet_2190419_2190470 chr3LHet - chr3LHet_2190419_2190556 chr3LHet_2190418_2190419;chr3LHet_2190556_2190557 chr3LHet_2190319_2190418;chr3LHet_2190557_2190570 84.00 NA NA 78.26 NA 88.89 95.65 90.91 88.89 NA NA 86.67 91.67 84.62 NA 80.65 NA NA 60.00 94.12 NA NA 77.78 NA NA NA NA NA NA NA 60.00 NA NA 84.00 75.00 75.00 NA NA NA 100.00 86.67 76.92 NA 80.00 NA 61.11 90.91 NA 80.00 83.33 90.91 NA NA NA 70.00 88.89 78.57 84.21 K intron_retention CG3651,I_chr2L_22124217_22124661 chr2L + chr2L_22123682_22123740 chr2L_22123681_22123682;chr2L_22123740_22123741 chr2L_22122251_22123681;chr2L_22123741_22124028 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.96 0.00 1.27 0.00 0.00 0.00 1.00 0.00 1.33 0.00 0.00 1.42 1.16 0.00 0.74 0.00 0.00 0.00 6.40 2.90 2.44 0.00 0.00 0.00 0.00 0.69 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.58 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3635,I_chr2L_22179420_22179486 chr2L + chr2L_22179420_22179486 chr2L_22179419_22179420;chr2L_22179486_22179487 chr2L_22179368_22179419;chr2L_22179487_22179566 68.18 63.16 68.00 57.14 56.25 66.67 76.79 71.70 65.08 90.91 62.86 70.45 75.00 64.00 78.26 78.72 63.16 70.97 68.75 65.22 69.57 76.47 50.00 68.42 69.23 71.43 69.57 66.67 94.74 81.82 63.46 69.23 68.75 59.62 60.00 90.91 50.00 53.33 75.00 58.33 77.78 77.50 60.00 68.18 64.71 67.44 76.47 57.14 70.45 65.31 68.18 87.50 84.62 50.00 64.29 65.38 62.96 69.57 K jcn_only_AA Arc-p34 chr2L + chr2L_20420413_20420494 chr2L_20420413_20420489 chr2L_20420319_20420412;chr2L_20420495_20420589 99.80 99.76 100.00 99.75 99.67 99.75 100.00 99.76 100.00 99.54 100.00 100.00 99.71 99.75 99.80 100.00 100.00 100.00 100.00 99.91 100.00 99.70 99.70 99.46 100.00 99.59 99.65 99.71 100.00 99.69 99.49 99.69 99.40 100.00 100.00 99.48 100.00 100.00 99.77 99.72 99.69 100.00 99.73 99.76 100.00 99.60 100.00 99.46 99.90 100.00 100.00 99.72 100.00 100.00 100.00 99.81 99.75 99.84 K intron_retention CREI_chr2L_9938511_9938564,CG5853,RI_chr2L_9942818_9944294,I_chr2L_9944682_9947179 chr2L - chr2L_9942408_9942474 chr2L_9942407_9942408;chr2L_9942474_9942475 chr2L_9942169_9942407;chr2L_9942475_9942596 0.00 0.00 0.00 0.00 0.00 3.23 3.03 0.00 1.54 7.69 0.00 4.44 0.00 0.00 0.00 15.22 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 7.41 0.00 2.33 3.70 0.00 0.00 4.26 0.00 5.88 0.00 0.00 2.33 0.00 0.00 0.00 5.71 0.00 0.00 0.00 7.69 0.00 0.00 2.27 0.00 0.00 7.14 0.00 0.00 0.00 0.00 3.85 0.00 1.45 5.00 K intron_retention Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4848658_4849003 chrX_4848657_4848658;chrX_4849003_4849004 chrX_4848168_4848657;chrX_4849004_4849551 2.17 0.00 0.00 5.17 0.00 2.38 6.38 2.78 4.17 0.00 0.00 6.45 0.00 0.00 0.00 3.92 6.67 0.00 5.26 5.45 0.00 13.04 0.00 0.00 0.00 2.56 4.76 0.00 0.00 7.69 4.17 4.55 0.00 8.43 4.55 0.00 0.00 0.00 0.00 6.00 7.69 5.88 0.00 0.00 0.00 3.92 0.00 5.26 0.00 2.44 1.96 4.35 NA 6.67 6.56 0.00 0.00 5.13 K intron_retention CG3829,I_chr2R_20875497_20875710 chr2R + chr2R_20876758_20876814 chr2R_20876757_20876758;chr2R_20876814_20876815 chr2R_20876485_20876757;chr2R_20876815_20877406 0.00 NA NA 0.00 NA 0.00 NA 0.00 4.35 5.56 NA NA 0.00 0.00 NA NA NA 0.00 0.00 0.00 NA 8.47 5.88 NA NA NA 25.00 0.00 12.00 0.00 0.00 3.70 3.12 NA 0.00 15.79 NA NA 0.00 7.41 4.35 0.00 NA 9.09 0.00 0.00 NA 1.72 NA NA 0.00 7.69 NA 6.67 NA NA NA 0.00 K jcn_only_AD drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9390195;chr2R_9389597_9389907;chr2R_9389597_9389940;chr2R_9389597_9390293;chr2R_9389597_9389751;chr2R_9389597_9390264;chr2R_9389597_9389753;chr2R_9389597_9389757 chr2R_9389597_9390151 chr2R_9389497_9389596;chr2R_9390294_9390295 0.83 6.45 1.16 0.98 4.35 1.75 1.69 0.00 1.25 0.00 0.00 1.75 0.00 0.00 1.20 0.00 0.00 0.00 1.06 0.44 0.00 1.82 0.00 1.37 0.00 0.00 0.00 1.82 3.70 1.47 1.18 0.00 4.65 0.83 0.00 1.03 1.67 5.41 0.00 0.00 0.00 0.72 4.88 1.56 0.00 1.64 0.00 5.88 1.49 0.00 0.00 0.00 1.49 0.00 1.19 3.33 0.00 0.00 K intron_retention Rcd4 chr2L + chr2L_8383271_8383334 chr2L_8383270_8383271;chr2L_8383334_8383335 chr2L_8382761_8383270;chr2L_8383335_8383657 0.00 0.00 0.00 4.35 0.00 0.00 0.00 2.00 1.45 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 10.81 20.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 5.88 NA 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 K intron_retention Aldh-III,I_chr2R_3358388_3361226,I_chr2R_3360750_3360792,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3360852_3361226 chr2R_3360851_3360852;chr2R_3361226_3361227 chr2R_3360793_3360851;chr2R_3361227_3361326 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor su(f),I_chrXHet_77570_78035 chrXHet + chrXHet_77736_78035;chrXHet_77570_78035 chrXHet_77832_78035 chrXHet_78036_78135;chrXHet_77470_77569 2.53 2.25 1.00 4.27 1.41 2.47 1.83 4.14 2.53 3.64 2.82 2.41 4.41 4.23 1.89 3.09 1.61 2.82 3.45 3.97 1.43 5.56 2.65 2.68 2.74 1.05 2.70 3.92 3.17 2.44 2.73 2.60 1.08 2.31 3.03 2.53 1.87 1.19 2.90 2.17 1.32 2.31 5.56 1.16 2.27 2.02 2.35 0.83 2.60 2.22 1.83 1.69 4.62 2.82 2.65 3.49 1.00 0.93 K alternative_donor None chrU - chrU_5771599_5771833;chrU_5771599_5771684 chrU_5771599_5771693 34.67 34.68 30.30 35.37 35.64 30.83 33.59 40.59 32.89 37.30 35.00 35.47 25.45 36.27 28.77 35.71 32.97 33.96 28.97 32.80 38.46 36.87 26.03 35.91 35.54 35.42 35.94 36.62 37.78 38.24 32.28 40.38 41.13 33.52 34.96 43.62 32.37 34.97 32.39 33.47 34.43 32.80 33.33 35.50 33.20 34.67 35.75 33.64 33.93 31.31 33.16 35.85 36.45 36.36 34.51 33.50 32.98 33.88 K intron_retention e,I_chr3R_17055860_17056144 chr3R - chr3R_17056321_17056381 chr3R_17056320_17056321;chr3R_17056381_17056382 chr3R_17056145_17056320;chr3R_17056382_17056472 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA 0.00 NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA K alternative_donor cnc,I_chr3R_19014852_19016738,I_chr3R_19046366_19046507,I_chr3R_19046619_19047567 chr3R - chr3R_19046366_19047563;chr3R_19046366_19047567 chr3R_19046366_19046507 chr3R_19046266_19046365;chr3R_19047568_19047667 22.22 20.00 12.50 18.18 33.33 20.00 30.00 18.75 44.44 16.67 50.00 21.43 16.67 12.50 12.50 22.22 20.00 50.00 25.00 33.33 NA 45.45 18.18 20.00 50.00 12.50 50.00 100.00 42.86 40.00 13.33 25.00 27.27 36.36 12.50 22.22 NA NA 25.00 23.53 16.67 21.05 14.29 20.00 NA 25.00 NA 25.00 14.29 NA 14.29 20.00 NA NA 25.00 33.33 NA 25.00 K jcn_only_AD NijA chr3L - chr3L_10688516_10688728 chr3L_10688516_10688577 chr3L_10688432_10688515;chr3L_10688729_10688804 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 8.70 0.00 0.00 3.70 4.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 6.52 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 1.64 0.00 1.75 NA 3.70 1.54 0.00 3.85 0.00 1.35 3.70 2.50 2.94 0.00 2.17 0.00 0.00 3.92 0.00 K alternative_acceptor CG30015,I_chr2R_6743814_6744285 chr2R - chr2R_6730353_6730422 chr2R_6730356_6730422 chr2R_6730423_6730486;chr2R_6726619_6730352 100.00 96.67 100.00 97.14 100.00 95.45 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 96.55 95.00 93.75 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 96.97 100.00 100.00 96.55 96.00 95.45 100.00 97.56 100.00 100.00 100.00 100.00 97.44 98.00 97.14 98.15 95.45 100.00 100.00 97.73 100.00 100.00 98.00 100.00 97.56 100.00 92.31 100.00 96.97 100.00 100.00 96.15 K jcn_only_AD E(bx),I_chr3L_236428_236553,RI_chr3L_236428_236858,RI_chr3L_236451_239054,RI_chr3L_236508_236862,I_chr3L_239186_239264,I_chr3L_246324_246699 chr3L - chr3L_236428_236858;chr3L_236428_239054;chr3L_236428_236862 chr3L_236428_236553 chr3L_236408_236427 2.12 0.00 2.22 0.00 0.00 0.00 2.04 2.44 0.99 12.50 7.41 3.57 12.50 2.50 0.00 1.89 6.25 2.63 2.04 4.42 13.64 7.41 6.58 0.00 3.45 0.00 0.00 6.45 0.00 5.26 5.13 0.00 0.00 3.49 0.00 0.00 1.89 4.35 0.00 0.00 NA 1.45 0.00 8.89 4.17 6.25 0.00 3.64 2.20 0.00 3.28 0.00 0.00 0.00 2.38 5.56 0.00 7.69 K intron_retention Galpha49B,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8504706_8505299 chr2R_8504705_8504706;chr2R_8505299_8505300 chr2R_8504606_8504705;chr2R_8505300_8505429 0.00 0.00 0.00 10.71 0.00 0.00 2.17 1.23 2.86 NA 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 3.16 0.00 0.00 0.00 0.00 0.00 2.56 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA K alternative_acceptor shf,I_chrX_6667375_6667947,I_chrX_6668147_6668215 chrX - chrX_6667283_6667947 chrX_6667295_6667947 chrX_6667948_6667953;chrX_6667275_6667282 67.17 NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor I_chr2L_822032_822857,dock chr2L + chr2L_826508_829304 chr2L_826512_829304 chr2L_829305_829468;chr2L_826008_826507 0.00 0.00 0.00 1.28 0.00 0.00 0.00 1.41 0.98 2.00 2.63 1.15 2.70 0.00 0.00 0.00 2.94 0.00 2.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 2.13 0.00 1.61 0.00 2.44 0.00 0.00 4.35 0.00 1.69 0.00 0.00 0.00 K intron_retention CG7430,CG7441 chr3L + chr3L_17842117_17842179 chr3L_17842116_17842117;chr3L_17842179_17842180 chr3L_17841238_17842116;chr3L_17842180_17842596 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.69 0.23 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 K jcn_only_AA CG32075,CG6310 chr3L - chr3L_11056207_11056286 chr3L_11056224_11056286 chr3L_11056287_11056501;chr3L_11056003_11056206 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA 95.83 NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 97.78 NA NA NA NA NA NA 94.59 100.00 NA NA NA NA NA 100.00 100.00 100.00 K intron_retention CG2076 chrX + chrX_10984832_10984898 chrX_10984831_10984832;chrX_10984898_10984899 chrX_10984402_10984831;chrX_10984899_10985010 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CoRest,I_chrX_19416977_19417035 chrX + chrX_19416603_19417035;chrX_19416977_19417035;chrX_19416669_19417035;chrX_19416423_19417035 chrX_19416431_19417035 chrX_19417036_19417135;chrX_19416201_19416422 16.15 19.83 27.78 16.87 13.85 17.86 15.00 17.58 17.02 18.92 16.13 17.91 15.25 10.34 12.33 9.59 22.86 9.23 8.62 15.28 15.69 15.52 18.18 17.24 12.33 16.67 19.20 12.00 13.08 16.67 12.86 10.13 20.72 12.37 20.18 13.60 13.60 18.47 16.15 14.65 16.00 12.67 23.53 18.18 20.00 20.65 15.84 16.53 22.56 22.22 14.29 16.67 18.18 10.23 15.48 18.75 10.23 18.60 K jcn_only_AA CG10089,I_chr3L_13460276_13460443 chr3L - chr3L_13460240_13460443 chr3L_13460276_13460443 chr3L_13460444_13460543;chr3L_13460176_13460239 4.17 NA NA 11.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.00 NA NA NA NA NA NA NA NA NA NA NA NA 7.14 3.57 NA 0.00 4.17 NA 10.00 NA NA NA 4.76 NA 0.00 5.00 NA NA NA NA NA NA NA NA 3.85 K jcn_only_AA psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6501632_6502058;chr2R_6501632_6502052 chr2R_6501632_6502037 chr2R_6501448_6501631;chr2R_6502059_6503753 94.32 95.88 93.14 90.55 93.94 97.56 84.91 94.12 90.28 92.38 95.40 92.98 92.47 95.15 91.97 96.59 94.32 98.00 95.89 91.45 95.40 94.19 94.82 92.97 92.74 85.71 95.38 93.14 97.04 95.95 94.12 95.71 90.80 96.30 93.91 94.22 95.26 94.88 97.15 95.44 92.19 93.94 93.18 95.89 91.30 97.09 99.12 98.04 94.92 93.46 93.24 96.55 96.20 94.68 94.96 95.69 92.19 90.35 K cassette CG1674,I_chr4_253475_257020,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_252604_254890 chr4_252604_252904;chr4_253475_254890 chr4_252905_253474 chr4_252584_252603;chr4_254891_254971 14.29 18.18 7.14 5.26 NA 18.18 26.67 4.88 10.87 NA 28.57 10.71 6.67 10.00 7.14 20.00 4.76 10.00 10.53 15.79 12.50 22.22 12.50 22.22 NA NA 33.33 NA NA 12.50 11.11 14.29 50.00 10.00 NA 83.33 NA NA NA 33.33 NA 7.14 15.38 11.11 NA 33.33 NA 40.00 17.65 NA 18.18 40.00 NA NA 7.69 12.50 66.67 33.33 K alternative_acceptor mnb chrX - chrX_17762200_17763014;chrX_17762203_17763014 chrX_17762403_17763014 chrX_17763015_17763849;chrX_17762180_17762199 86.67 100.00 100.00 NA 80.00 75.00 100.00 NA 92.86 100.00 100.00 90.00 83.33 100.00 83.33 100.00 100.00 NA 100.00 88.89 100.00 88.89 83.33 92.31 71.43 NA 68.75 70.00 73.33 90.91 100.00 NA 85.71 100.00 90.00 NA 92.86 72.73 80.00 100.00 NA 90.91 80.00 86.67 80.00 83.33 77.78 83.33 100.00 80.00 91.67 71.43 83.33 85.71 NA 83.33 75.00 75.00 K jcn_only_AD CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516706_21517821;chr3L_21516330_21517821;chr3L_21516399_21517821;chr3L_21516722_21517821;chr3L_21516501_21517821;chr3L_21516918_21517821;chr3L_21516343_21517821;chr3L_21516728_21517821 chr3L_21517168_21517821 chr3L_21517822_21517920;chr3L_21516311_21516329 13.64 9.09 8.00 15.79 10.00 14.29 15.25 4.76 14.00 NA NA 16.67 NA 13.04 4.00 3.85 20.00 16.67 NA 13.33 NA 8.00 6.06 13.64 NA 5.00 14.29 NA 13.64 NA 5.13 NA 11.11 16.33 NA 20.00 14.29 4.17 NA 25.00 NA 18.64 13.04 15.15 NA 12.50 14.29 21.43 22.95 NA NA NA NA NA 25.93 NA NA 5.00 K intron_retention CG11486,I_chr3L_3082041_3082115,RE_chr3L_3084894_3085203 chr3L + chr3L_3073479_3083732 chr3L_3073478_3073479;chr3L_3083732_3083733 chr3L_3073278_3073478;chr3L_3083733_3083809 0.00 NA 0.00 6.25 NA 4.76 5.00 0.00 4.17 NA NA 0.00 NA 0.00 6.67 3.85 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 10.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 2.44 0.00 9.09 0.00 NA NA 0.00 NA 0.00 3.57 NA 0.00 NA NA NA 0.00 NA NA 3.85 K alternative_acceptor EDTP chr2R - chr2R_13320840_13320924;chr2R_13320873_13320924 chr2R_13320861_13320924 chr2R_13320925_13321563;chr2R_13320696_13320839 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 4.17 NA NA 2.56 0.00 NA 6.25 5.56 NA 0.00 0.00 0.00 NA 4.17 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 2.86 0.00 5.56 NA NA 0.00 0.00 0.00 0.00 K cassette eIF-4E,RI_chr3L_9394054_9394756,I_chr3L_9394308_9394756,RI_chr3L_9394468_9394631,I_chr3L_9394468_9394659,I_chr3L_9394468_9395155,I_chr3L_9394468_9395240,I_chr3L_9394468_9395446,I_chr3L_9394685_9394756,RI_chr3L_9394707_9395016,RI_chr3L_9394707_9395198,I_chr3L_9394707_9395309,I_chr3L_9394819_9395198,I_chr3L_9394819_9395379 chr3L - chr3L_9394468_9395016;chr3L_9394468_9395198;chr3L_9394468_9395379 chr3L_9394468_9394631;chr3L_9394707_9395198,chr3L_9394707_9395379,chr3L_9394707_9395016 chr3L_9394632_9394706 chr3L_9394368_9394467;chr3L_9395380_9395409 29.73 28.57 31.82 48.86 34.62 29.73 40.00 27.56 25.00 41.67 21.74 45.97 13.58 23.68 33.33 32.03 32.08 33.33 28.00 36.00 24.00 34.88 25.56 33.85 31.03 28.00 43.75 28.21 34.88 40.43 30.30 26.42 34.15 34.96 26.67 26.67 27.91 26.53 36.73 30.68 25.86 33.33 27.87 26.19 21.05 19.80 24.21 32.00 29.09 33.33 32.53 28.00 29.33 22.62 33.33 28.17 30.61 23.01 K intron_retention eIF2B-delta chr2R + chr2R_19274146_19274312 chr2R_19274145_19274146;chr2R_19274312_19274313 chr2R_19274016_19274145;chr2R_19274313_19274350 50.00 NA NA 30.77 NA NA 45.45 50.00 50.00 NA NA 70.59 18.75 NA NA 60.00 NA NA 41.67 NA NA NA NA NA NA NA 53.85 NA NA NA 60.00 NA NA 43.75 NA NA NA NA NA NA NA 72.73 NA NA NA NA NA NA 31.58 NA NA 60.00 NA NA 38.46 NA NA NA K intron_retention CG10139 chr2R + chr2R_10532815_10532878 chr2R_10532814_10532815;chr2R_10532878_10532879 chr2R_10532740_10532814;chr2R_10532879_10533061 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 90.91 100.00 100.00 92.86 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 95.24 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 95.45 97.30 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 95.65 K jcn_only_AD CG11367,CG32454,I_chr3L_22724590_22725116 chr3L + chr3L_22722194_22725116 chr3L_22724590_22725116 chr3L_22725117_22725134;chr3L_22721249_22722193 3.63 NA NA NA NA NA NA NA NA NA NA 6.90 NA NA NA NA NA NA NA 3.70 NA 6.45 NA 3.57 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA 3.85 NA NA NA NA NA NA NA NA 7.69 NA NA 0.00 NA NA NA NA K jcn_only_AD gw,RI_chr4_679135_679703,I_chr4_679135_680299,RI_chr4_679135_680693,I_chr4_679135_681047,I_chr4_679135_681671 chr4 - chr4_679135_681128;chr4_679135_681054 chr4_679135_681206 chr4_679035_679134;chr4_681207_681208 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 2.33 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 K intron_retention Ac3,I_chr2L_21635211_21637957,I_chr2L_21643253_21646594 chr2L + chr2L_21638369_21639240 chr2L_21638368_21638369;chr2L_21639240_21639241 chr2L_21638230_21638368;chr2L_21639241_21639503 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA NA NA NA NA NA 12.50 NA NA NA 0.00 NA 0.00 6.67 NA NA NA NA NA 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 K intron_retention CG7766,I_chrX_8993495_8994545,I_chrX_8991338_8991387 chrX - chrX_8989367_8989427 chrX_8989366_8989367;chrX_8989427_8989428 chrX_8989109_8989366;chrX_8989428_8989684 1.60 3.23 2.50 3.33 3.57 2.91 1.60 3.31 2.65 1.10 0.00 3.74 1.09 4.94 0.98 1.98 2.70 2.67 4.60 4.31 6.06 2.60 1.52 1.84 1.42 2.94 0.84 5.08 0.84 3.02 1.83 1.57 3.40 0.69 0.89 0.00 1.16 1.39 0.00 2.31 1.24 3.72 3.12 1.44 0.61 0.48 0.65 1.03 3.23 1.21 2.00 0.95 0.00 0.63 1.80 0.60 1.53 0.00 K intron_retention CG5104,I_chr3L_20514878_20515263 chr3L + chr3L_20514878_20515254 chr3L_20514877_20514878;chr3L_20515254_20515255 chr3L_20514778_20514877;chr3L_20515255_20515781 2.17 2.82 1.12 14.56 1.59 1.14 2.59 2.40 2.17 2.13 6.25 1.66 3.49 2.22 2.11 1.47 0.00 0.00 2.11 3.03 2.67 0.00 6.67 2.11 4.35 0.00 3.85 8.00 3.57 2.04 2.02 1.28 3.17 1.55 2.70 10.26 0.85 4.05 3.70 2.70 2.90 1.45 0.00 4.35 1.32 1.98 2.25 5.00 3.82 1.71 3.90 0.00 0.00 1.61 1.75 0.00 2.40 5.21 K cassette crol,I_chr2L_11799403_11802904 chr2L - chr2L_11803899_11809125;chr2L_11803899_11808013 chr2L_11803899_11806047;chr2L_11806158_11809125,chr2L_11806158_11808013 chr2L_11806048_11806157 chr2L_11803785_11803898;chr2L_11809126_11809399 78.55 81.74 80.14 48.91 77.67 76.15 61.99 80.83 80.53 75.00 54.00 78.57 71.43 76.52 80.00 71.53 83.00 64.35 80.33 90.58 68.42 74.82 79.39 83.97 66.00 77.17 73.94 63.80 46.88 77.25 84.96 75.00 78.55 83.51 79.10 61.90 83.17 84.09 79.67 83.14 70.80 79.03 75.25 81.25 68.13 78.20 76.40 79.66 72.65 79.05 80.59 83.49 82.61 81.25 79.63 74.67 75.86 81.70 K intron_retention Klc,I_chr3L_12741779_12743062,I_chr3L_12741783_12742943,I_chr3L_12741838_12743062 chr3L - chr3L_12741779_12743062 chr3L_12741778_12741779;chr3L_12743062_12743063 chr3L_12741738_12741778;chr3L_12743063_12743083 61.82 NA NA 63.64 NA NA 60.00 NA 56.25 NA NA 66.67 NA NA NA 46.15 NA NA NA 64.71 NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 58.33 NA NA NA NA NA NA NA NA NA K intron_retention br,I_chrX_1517022_1518170 chrX + chrX_1518741_1529864 chrX_1518740_1518741;chrX_1529864_1529865 chrX_1518171_1518740;chrX_1529865_1530053 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG31278,noncoding_15893,RI_chr3R_6533509_6533568 chr3R - chr3R_6533509_6533568;chr3R_6533509_6533960 chr3R_6533509_6533579 chr3R_6533409_6533508;chr3R_6533961_6534040 86.96 NA NA 96.15 NA NA NA 84.00 84.62 NA NA NA NA NA NA NA NA NA NA 86.96 NA NA NA NA NA NA 64.00 NA NA NA 61.54 NA 93.55 87.50 NA NA 76.19 NA 86.21 NA 96.15 90.00 NA NA NA NA NA NA 90.00 NA 85.00 NA NA NA NA 85.71 93.02 97.78 K jcn_only_AD Psn,RI_chr3L_20430213_20430358 chr3L + chr3L_20427346_20427647;chr3L_20427403_20427647 chr3L_20427445_20427647 chr3L_20427648_20427812;chr3L_20427187_20427345 11.53 10.98 12.32 10.64 16.11 7.69 9.17 18.88 11.68 9.09 15.38 13.66 23.31 15.13 15.05 12.50 22.46 12.59 18.75 10.83 12.41 10.05 9.80 11.31 7.53 15.87 13.15 16.51 36.42 11.59 19.87 16.44 13.55 13.03 18.24 12.42 8.01 9.50 9.30 4.90 10.62 10.65 7.09 10.04 8.44 9.66 10.98 4.59 13.26 9.96 11.53 6.57 9.36 10.66 14.52 11.20 11.58 9.76 K intron_retention CG40351,CREFI_chr3LHet_606442_607073 chr3LHet + chr3LHet_599028_599489 chr3LHet_599027_599028;chr3LHet_599489_599490 chr3LHet_595420_599027;chr3LHet_599490_600123 10.53 5.56 6.25 28.21 NA 5.56 2.86 3.92 9.76 NA NA 11.11 0.00 0.00 NA 20.00 14.29 NA 0.00 11.76 NA NA 10.53 NA NA 21.43 19.05 NA NA NA NA NA 14.29 3.85 NA NA NA NA NA NA NA 6.25 10.53 21.43 NA 30.77 NA NA 11.43 12.50 0.00 NA NA NA 0.00 NA NA NA K intron_retention uzip,I_chr2R_20916008_20916468 chr2R + chr2R_20899685_20900155 chr2R_20899684_20899685;chr2R_20900155_20900156 chr2R_20899603_20899684;chr2R_20900156_20900229 92.31 NA NA 92.31 NA NA 93.75 92.31 92.86 NA NA NA 88.89 NA NA 88.89 NA NA 87.50 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 92.31 NA 100.00 NA NA NA NA NA 86.67 NA NA NA NA NA NA 92.31 NA NA NA NA NA 87.50 NA NA NA K intron_retention RpL12,E_chr2R_19948229_19948395,I_chr2R_19948517_19948682 chr2R + chr2R_19948098_19948198 chr2R_19948097_19948098;chr2R_19948198_19948199 chr2R_19948036_19948097;chr2R_19948199_19948228 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.02 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.07 0.10 0.08 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.01 0.00 0.02 0.02 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.02 K alternative_donor klett chrX - chrX_21499737_21501093 chrX_21499737_21501000 chrX_21499389_21499736;chrX_21501094_21501123 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 92.86 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K jcn_only_AA polo,I_chr3L_20303509_20305486,I_chr3L_20306985_20307177 chr3L + chr3L_20305712_20305791 chr3L_20305712_20305778 chr3L_20305283_20305711;chr3L_20305792_20306566 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.80 100.00 100.00 100.00 100.00 100.00 99.45 100.00 98.84 99.00 100.00 100.00 100.00 99.28 100.00 100.00 100.00 100.00 99.44 100.00 100.00 100.00 100.00 100.00 100.00 99.48 100.00 100.00 100.00 99.69 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention wmd,I_chr2R_19433515_19434850 chr2R - chr2R_19433515_19435012 chr2R_19433514_19433515;chr2R_19435012_19435013 chr2R_19433415_19433514;chr2R_19435013_19435398 0.00 0.00 0.00 3.23 0.00 5.26 0.00 0.00 0.00 5.88 0.00 2.41 0.00 0.00 5.41 0.00 0.00 0.00 NA 5.06 0.00 6.25 2.60 0.00 5.88 0.00 4.65 3.92 0.00 0.00 0.00 0.00 0.00 8.33 2.38 3.45 2.25 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 1.25 1.85 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 K alternative_acceptor CG15032,I_chrX_15200613_15200682 chrX + chrX_15200613_15204410 chrX_15200613_15200682 chrX_15200513_15200612;chrX_15204411_15205252 0.00 0.00 0.00 1.69 0.00 0.00 2.33 1.89 0.00 0.00 0.00 2.38 0.00 0.00 0.00 2.63 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 K alternative_donor Mkrn1 chr3L - chr3L_21526287_21526740 chr3L_21526287_21526666 chr3L_21525439_21526286;chr3L_21526741_21526778 100.00 100.00 96.00 96.36 100.00 95.00 97.78 97.92 95.83 100.00 95.24 100.00 100.00 100.00 100.00 98.53 100.00 95.24 100.00 98.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 97.06 100.00 100.00 100.00 100.00 93.33 100.00 100.00 96.55 94.44 90.91 98.11 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Mbs,I_chr3L_16045251_16046108,I_chr3L_16057100_16057329 chr3L + chr3L_16059930_16061212 chr3L_16059929_16059930;chr3L_16061212_16061213 chr3L_16059713_16059929;chr3L_16061213_16061280 6.32 7.32 5.49 7.83 2.86 8.64 11.32 12.09 8.17 0.00 13.33 8.09 13.64 10.14 6.32 6.15 8.97 4.65 6.19 8.33 10.42 4.59 7.09 5.38 9.86 8.89 8.14 6.45 3.57 3.64 6.54 2.56 3.31 5.92 10.14 10.75 5.43 4.72 7.25 5.46 4.71 5.32 6.78 9.46 0.00 3.42 5.13 4.08 4.61 7.69 5.62 8.70 4.17 2.56 8.14 8.62 1.47 0.43 K jcn_only_AA neur,Nmdmc chr3R - chr3R_4847764_4847825 chr3R_4847767_4847825 chr3R_4847826_4849567;chr3R_4846119_4847763 16.00 27.27 NA 7.32 32.00 NA NA 5.88 17.65 20.51 NA 17.50 NA NA 12.00 NA NA 13.64 16.67 16.36 NA 18.75 17.50 14.71 16.00 NA 17.86 16.00 16.00 18.18 NA NA 15.38 18.18 11.11 32.35 8.93 4.35 17.02 9.80 10.00 11.90 NA 8.82 13.51 NA 6.67 15.00 17.50 16.67 15.62 13.33 NA NA 21.43 20.00 NA 8.00 K jcn_only_AD CG9386,RI_chr3R_5380786_5380850 chr3R - chr3R_5380786_5380850 chr3R_5380786_5380846 chr3R_5380686_5380785;chr3R_5380851_5380950 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.55 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 95.24 NA NA NA NA NA NA NA NA NA K intron_retention GM130,CG34205 chr2R - chr2R_18014710_18014810 chr2R_18014709_18014710;chr2R_18014810_18014811 chr2R_18014650_18014709;chr2R_18014811_18014999 2.70 3.33 8.11 4.92 2.94 0.00 4.65 3.23 0.00 0.00 0.00 0.00 0.00 5.88 3.64 5.00 2.78 2.70 0.00 3.26 0.00 5.26 3.61 2.27 5.71 0.00 5.63 7.14 5.08 0.00 17.50 3.33 6.90 1.79 2.63 2.17 1.01 0.00 2.90 1.03 0.00 4.76 0.00 0.00 3.33 5.26 0.00 5.45 2.74 1.92 4.05 2.56 0.00 0.00 0.00 1.59 0.00 3.45 K intron_retention ade5,I_chrX_12653069_12653157 chrX - chrX_12653949_12654381 chrX_12653948_12653949;chrX_12654381_12654382 chrX_12653745_12653948;chrX_12654382_12654426 0.00 0.00 0.71 0.29 0.00 0.47 0.33 0.49 0.52 0.00 0.00 0.21 0.00 0.00 0.00 1.42 0.71 0.00 0.00 0.00 0.00 0.00 0.28 0.68 0.53 0.00 0.46 0.98 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.42 0.00 0.00 0.00 0.49 0.48 0.62 1.05 0.41 0.00 0.00 0.00 0.60 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Rab35 chrX - chrX_20052303_20052928 chrX_20052303_20052371 chrX_20052003_20052302;chrX_20052929_20053057 2.68 1.54 1.79 1.16 2.44 1.80 4.00 1.42 2.31 2.38 1.25 2.96 4.76 4.44 2.75 0.82 1.10 3.49 1.03 2.34 0.00 7.41 2.15 3.31 3.17 0.81 3.18 3.33 5.83 3.15 2.70 3.64 4.83 1.76 1.79 1.71 4.14 2.56 3.33 3.83 4.92 2.42 1.00 4.72 3.60 3.85 4.72 2.73 2.30 3.60 3.43 3.49 1.60 2.29 2.65 2.68 1.67 2.42 K alternative_donor dNAT1,CG13319,RI_chr2R_8812301_8816468 chr2R + chr2R_8805260_8805499;chr2R_8805206_8805499 chr2R_8805410_8805499 chr2R_8805500_8808364;chr2R_8805191_8805205 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 81.82 100.00 75.00 NA NA 100.00 100.00 100.00 100.00 80.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 75.00 NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA 100.00 K intron_retention msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585739_2586413 chr3L_2585738_2585739;chr3L_2586413_2586414 chr3L_2585639_2585738;chr3L_2586414_2586502 98.48 100.00 100.00 92.31 NA 100.00 100.00 93.33 96.00 NA 88.89 100.00 100.00 90.91 94.12 95.24 NA 92.31 92.31 100.00 NA 96.97 94.44 91.67 100.00 91.67 100.00 100.00 95.24 100.00 92.86 NA 100.00 100.00 100.00 100.00 92.31 100.00 100.00 89.66 92.86 95.24 90.91 100.00 NA 100.00 91.67 95.65 89.29 NA 100.00 100.00 NA NA 100.00 100.00 NA NA K cassette didum,I_chr2R_3393005_3393348 chr2R + chr2R_3393005_3393343 chr2R_3393005_3393153;chr2R_3393252_3393343 chr2R_3393154_3393251 chr2R_3392905_3393004;chr2R_3393344_3393524 100.00 100.00 100.00 100.00 100.00 96.67 100.00 97.67 100.00 100.00 100.00 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.63 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG31075 chr3R - chr3R_22812092_22812154 chr3R_22812091_22812092;chr3R_22812154_22812155 chr3R_22811344_22812091;chr3R_22812155_22812726 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG34360,I_chr3R_5769617_5812369,CG12419 chr3R + chr3R_5769617_5808000 chr3R_5769616_5769617;chr3R_5808000_5808001 chr3R_5769517_5769616;chr3R_5808001_5808092 6.67 NA NA 6.67 NA NA 0.00 0.00 6.67 46.15 NA 0.00 NA NA NA 15.00 NA NA NA 0.00 NA 10.00 NA 13.33 NA NA 0.00 NA NA NA 20.00 NA 10.53 11.11 NA 15.38 0.00 NA 0.00 0.00 NA 9.09 NA NA NA NA NA NA 0.00 NA 16.67 NA NA NA NA NA NA NA K jcn_only_AA CG7741,I_chr2R_7192031_7192092 chr2R + chr2R_7192031_7192092 chr2R_7192031_7192088 chr2R_7191931_7192030;chr2R_7192093_7192192 96.88 96.15 96.30 100.00 NA NA 100.00 95.00 97.67 NA NA 100.00 NA NA NA 100.00 NA 100.00 95.45 100.00 95.24 96.67 100.00 95.65 100.00 NA 100.00 97.30 NA NA 95.56 NA 100.00 100.00 96.15 100.00 100.00 93.75 94.44 100.00 96.30 96.23 NA 96.97 NA NA 94.29 90.91 96.36 94.29 100.00 100.00 96.77 89.66 NA 96.88 100.00 93.10 K jcn_only_AD CG40228,noncoding_14406,RI_chr3LHet_2190419_2190470 chr3LHet - chr3LHet_2190419_2190556;chr3LHet_2190419_2190563;chr3LHet_2190419_2190548;chr3LHet_2190419_2190561 chr3LHet_2190419_2190470 chr3LHet_2190319_2190418;chr3LHet_2190564_2190570 4.60 7.22 5.05 8.45 8.82 3.49 30.73 7.85 7.38 NA 0.00 5.32 8.33 0.88 2.50 1.89 6.98 1.15 4.17 4.47 1.85 9.52 4.84 4.17 11.76 1.75 2.25 0.00 1.61 2.56 0.68 5.80 6.82 2.88 3.76 4.60 NA 2.22 6.15 9.01 7.21 4.67 2.61 6.25 4.72 2.51 4.62 5.65 3.39 3.41 5.17 18.00 3.90 4.35 1.80 7.83 7.32 3.12 K intron_retention Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16111209_16111271 chr3L_16111208_16111209;chr3L_16111271_16111272 chr3L_16110645_16111208;chr3L_16111272_16111499 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.80 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL32,I_chr3R_25871509_25871807 chr3R - chr3R_25871347_25871408 chr3R_25871346_25871347;chr3R_25871408_25871409 chr3R_25870981_25871346;chr3R_25871409_25871508 0.03 0.03 0.00 0.02 0.05 0.03 0.03 0.04 0.04 0.04 0.03 0.03 0.00 0.03 0.06 0.01 0.02 0.02 0.02 0.02 0.07 0.17 0.02 0.04 0.03 0.07 0.13 0.29 0.39 0.04 0.04 0.03 0.01 0.02 0.04 0.05 0.01 0.03 0.03 0.04 0.07 0.04 0.03 0.03 0.02 0.03 0.02 0.01 0.07 0.05 0.04 0.03 0.03 0.03 0.04 0.01 0.04 0.03 K jcn_only_AD Hsc70-3,I_chrX_11699076_11699138,I_chrX_11699076_11699158,I_chrX_11699076_11699260,EI_chrX_11699076_11699573,I_chrX_11699076_11700062 chrX - chrX_11699076_11699923;chrX_11699076_11699335 chrX_11699076_11699321 chrX_11698976_11699075;chrX_11699924_11699938 97.17 97.50 94.64 97.28 98.25 94.74 94.67 96.58 99.07 96.83 96.55 96.83 98.88 97.18 93.65 99.22 100.00 92.00 97.70 94.17 98.11 98.75 97.65 97.17 98.00 97.14 98.77 95.45 97.92 98.28 97.37 96.00 97.94 96.43 100.00 100.00 98.72 96.30 96.00 98.25 98.51 96.99 98.39 97.01 92.75 99.21 97.06 98.09 99.41 95.88 96.20 95.59 98.08 91.30 95.12 94.00 95.60 96.32 K jcn_only_AA CG8798,I_chr3L_19602800_19602865 chr3L - chr3L_19604308_19604424 chr3L_19604362_19604424 chr3L_19604425_19604680;chr3L_19603902_19604307 11.11 10.26 5.13 18.57 11.43 6.45 15.09 13.33 15.73 4.17 17.24 16.44 25.00 9.09 2.56 18.64 5.56 15.56 15.15 20.27 19.05 6.56 10.45 4.00 0.00 9.09 18.00 8.22 9.86 14.93 14.29 14.29 9.41 11.11 12.20 4.35 1.69 4.65 6.00 6.61 3.77 11.69 8.70 16.18 6.06 8.77 17.24 6.25 20.00 18.52 12.96 12.50 10.00 9.52 16.67 18.75 23.81 9.09 K intron_retention CG9523 chr2L + chr2L_6425670_6425728 chr2L_6425669_6425670;chr2L_6425728_6425729 chr2L_6425601_6425669;chr2L_6425729_6425795 0.00 0.00 0.00 0.00 NA 3.33 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.70 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 2.70 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 K intron_retention F_chr2R_18805721_18805778,Nup214,I_chr2R_18820842_18820922 chr2R - chr2R_18806595_18806687 chr2R_18806594_18806595;chr2R_18806687_18806688 chr2R_18806476_18806594;chr2R_18806688_18808170 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA 8.33 NA 0.00 7.41 0.00 NA NA 15.38 7.69 0.00 NA 4.76 0.00 NA 0.00 0.00 4.76 NA NA 0.00 5.88 0.00 0.00 NA 0.00 0.00 4.44 3.45 NA 9.52 1.82 3.45 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention Cp190,I_chr3R_11100788_11100846,F_chr3R_11104164_11104239 chr3R - chr3R_11097713_11097772 chr3R_11097712_11097713;chr3R_11097772_11097773 chr3R_11096146_11097712;chr3R_11097773_11098713 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 K alternative_donor CG32442,Mkrn1 chr3L - chr3L_21522009_21522065 chr3L_21522009_21522057 chr3L_21521990_21522008;chr3L_21522066_21522185 17.07 NA NA NA NA NA 14.29 NA 15.38 NA NA NA NA NA NA 21.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 18.75 NA K jcn_only_AA Vap-33-1 chrX + chrX_3843406_3843520;chrX_3843406_3845447 chrX_3843406_3843513 chrX_3843337_3843405 100.00 100.00 100.00 98.90 100.00 100.00 99.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.07 100.00 100.00 99.38 100.00 100.00 100.00 100.00 100.00 100.00 98.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.57 100.00 100.00 98.78 100.00 100.00 100.00 97.26 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.10 99.19 K intron_retention Scamp,I_chrX_15342614_15342891,I_chrX_15343542_15343655 chrX - chrX_15343542_15343737 chrX_15343541_15343542;chrX_15343737_15343738 chrX_15343442_15343541;chrX_15343738_15343755 2.35 2.04 3.45 3.51 4.17 3.48 4.00 1.54 4.10 2.99 1.39 2.84 0.00 1.33 2.13 4.08 0.00 0.00 0.00 3.59 0.00 8.84 1.32 2.13 3.03 2.91 1.80 2.94 6.25 2.86 3.70 0.00 4.03 1.91 1.16 3.03 3.08 1.80 3.03 1.32 2.50 3.59 0.00 0.00 4.44 0.93 2.33 1.61 3.37 2.35 2.34 3.03 2.13 0.00 0.00 3.57 2.15 2.63 K alternative_donor CG3714,I_chr2L_4190825_4191774,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4192969_4193324 chr2L_4192969_4193309 chr2L_4192958_4192968;chr2L_4193325_4193424 100.00 94.12 100.00 97.14 100.00 100.00 100.00 96.15 100.00 100.00 100.00 96.15 100.00 100.00 100.00 90.48 100.00 100.00 100.00 100.00 94.44 98.04 97.56 96.30 100.00 96.15 97.22 96.43 98.67 95.12 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 96.43 98.15 98.04 97.56 100.00 97.96 98.04 100.00 100.00 95.12 100.00 100.00 96.97 100.00 100.00 100.00 100.00 96.00 100.00 98.18 K intron_retention CG7777,I_chr2R_7323928_7328572 chr2R + chr2R_7328996_7329439 chr2R_7328995_7328996;chr2R_7329439_7329440 chr2R_7328790_7328995;chr2R_7329440_7329695 1.02 1.72 2.21 1.32 0.00 0.85 0.63 1.38 1.67 0.00 0.73 1.01 0.84 1.83 2.67 1.96 4.40 0.00 2.47 1.76 0.85 9.80 1.11 0.00 0.00 0.75 3.66 0.00 0.00 2.94 1.03 2.56 3.39 1.02 0.00 0.00 1.40 0.00 0.87 0.79 2.08 1.68 1.06 0.00 1.57 1.40 0.00 2.15 0.78 0.00 2.04 0.00 0.96 0.00 1.30 0.00 1.32 0.55 K alternative_acceptor CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042891_5042983;chr2L_5042935_5042983 chr2L_5042888_5042983 chr2L_5042984_5043016;chr2L_5042835_5042887 22.22 NA NA 36.36 NA NA 36.36 25.00 21.43 NA NA 41.18 NA NA 37.50 10.00 NA NA 12.50 20.00 NA NA NA NA NA 12.50 NA 22.22 11.11 NA 22.22 12.50 20.00 27.27 NA 12.50 NA NA NA 27.78 30.00 25.00 NA NA NA 10.00 NA 45.45 28.57 NA 11.11 NA NA NA 36.36 NA NA 20.00 K intron_retention HP1c chr3R + chr3R_18571748_18571837 chr3R_18571747_18571748;chr3R_18571837_18571838 chr3R_18571350_18571747;chr3R_18571838_18572327 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD glo,I_chr3R_7644679_7644739,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7644683_7644880;chr3R_7644683_7644932;chr3R_7644683_7644739;chr3R_7644683_7644908 chr3R_7644683_7644743 chr3R_7644583_7644682;chr3R_7644933_7644980 6.23 5.94 5.10 8.89 9.09 5.26 17.52 8.97 6.71 2.56 18.37 6.47 5.63 2.33 7.77 6.03 7.50 NA 8.16 5.61 4.00 6.53 7.18 5.88 13.25 13.10 5.70 3.17 7.50 5.19 6.30 3.36 4.65 6.21 4.21 1.77 4.60 7.89 11.21 8.87 10.11 7.65 8.06 3.57 8.24 6.25 6.19 4.07 7.91 4.60 6.03 15.71 0.81 6.59 10.00 4.80 3.70 2.84 K intron_retention fw chrX - chrX_11888961_11889026 chrX_11888960_11888961;chrX_11889026_11889027 chrX_11888848_11888960;chrX_11889027_11889077 56.25 NA NA NA NA NA 36.36 NA 38.89 NA NA 38.89 NA NA 33.33 50.00 NA NA NA 44.44 NA 26.32 63.64 63.64 NA NA NA NA NA NA 76.19 NA NA NA NA NA 46.15 NA 54.55 56.25 NA 45.00 NA 81.82 NA 69.23 NA NA 73.33 NA 50.00 90.00 75.00 NA 63.64 NA 73.33 85.71 K alternative_donor fs(1)h,I_chrX_7950171_7952371,RI_chrX_7954192_7954783,I_chrX_7954192_7955240 chrX - chrX_7954192_7955408 chrX_7954192_7955296 chrX_7954092_7954191;chrX_7955409_7955445 96.15 100.00 NA 100.00 NA NA 92.86 92.86 95.65 NA NA 93.75 100.00 85.71 83.33 96.15 88.89 NA 100.00 100.00 NA NA 100.00 77.78 NA NA 100.00 NA NA NA 100.00 NA NA 93.75 NA NA 100.00 NA NA 100.00 NA 91.67 100.00 NA NA NA NA NA 88.89 NA 100.00 85.71 NA NA NA NA NA NA K alternative_acceptor RpL30,I_chr2L_19008540_19008948,REI_chr2L_19008544_19008723,I_chr2L_19008544_19008918,snoRNA:Me28S-A2113 chr2L - chr2L_19008540_19008948 chr2L_19008544_19008948 chr2L_19008949_19009018;chr2L_19008444_19008539 99.97 99.97 99.95 99.97 100.00 99.95 99.96 99.89 99.95 100.00 100.00 99.97 99.94 100.00 100.00 100.00 99.94 99.94 100.00 99.97 99.94 100.00 100.00 99.94 99.94 99.94 99.94 99.95 99.95 99.95 100.00 100.00 99.93 100.00 100.00 99.95 99.98 99.97 100.00 99.96 99.90 99.98 99.93 99.96 99.96 100.00 99.97 99.93 99.91 99.97 99.93 99.95 99.95 99.97 100.00 100.00 99.98 99.97 K cassette PMCA,RI_chr4_370306_371228,I_chr4_370428_370481,I_chr4_371836_372509,I_chr4_373671_374568,I_chr4_376108_379519 chr4 - chr4_370306_371228 chr4_370306_370355;chr4_370670_371228 chr4_370356_370669 chr4_370206_370305;chr4_371229_371316 97.83 98.86 99.05 85.16 95.59 96.43 97.13 96.59 98.39 100.00 98.68 93.09 99.17 97.20 95.41 98.91 98.26 100.00 97.83 95.32 100.00 98.48 95.88 98.68 98.21 89.89 98.88 97.62 97.30 100.00 93.83 94.87 91.49 98.59 96.49 84.48 100.00 100.00 98.18 98.10 97.22 97.52 99.04 99.09 93.33 98.55 100.00 98.48 96.85 98.04 98.02 94.03 89.74 100.00 97.76 94.23 95.52 96.88 K jcn_only_AD Ca-P60A,RI_chr2R_19820338_19820541,I_chr2R_19820338_19821424,CEI_chr2R_19820338_19821830,I_chr2R_19820338_19823289 chr2R - chr2R_19820338_19820817;chr2R_19820338_19820781;chr2R_19820338_19820765 chr2R_19820338_19820955 chr2R_19820238_19820337;chr2R_19820956_19820969 0.00 0.00 0.00 0.52 0.00 0.49 0.00 0.69 0.19 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.55 0.52 0.38 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.50 0.71 0.53 0.43 0.00 0.00 0.54 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.56 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32594 chrX + chrX_14925102_14925210 chrX_14925101_14925102;chrX_14925210_14925211 chrX_14924944_14925101;chrX_14925211_14925500 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.82 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.87 0.00 0.00 0.00 0.00 0.00 2.01 3.03 0.93 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 K intron_retention Syx6,I_chr2R_7108127_7108430 chr2R + chr2R_7108127_7108432 chr2R_7108126_7108127;chr2R_7108432_7108433 chr2R_7108027_7108126;chr2R_7108433_7108526 0.00 0.00 0.00 5.00 0.00 NA 0.00 5.56 8.33 0.00 NA 7.41 NA NA 0.00 0.00 NA NA 5.56 3.33 NA 0.00 4.55 0.00 0.00 0.00 11.11 0.00 0.00 0.00 10.00 0.00 0.00 11.11 0.00 4.17 0.00 0.00 0.00 0.00 0.00 8.70 NA 0.00 0.00 5.88 4.35 0.00 0.00 7.41 6.45 NA 0.00 0.00 NA 4.35 5.26 0.00 K jcn_only_AA Not1,I_chr2R_5463624_5463682 chr2R - chr2R_5463621_5463682 chr2R_5463624_5463682 chr2R_5463683_5463782;chr2R_5463524_5463620 7.86 7.25 4.55 9.01 7.73 9.20 6.06 7.86 8.29 7.76 9.64 8.25 10.00 10.32 7.76 6.06 8.16 9.09 7.77 8.35 7.89 6.57 9.07 13.11 10.43 7.26 9.96 13.74 8.33 10.08 6.43 5.71 7.23 7.07 12.05 4.29 7.82 5.16 8.47 4.56 15.38 9.49 7.69 6.61 2.78 5.26 7.02 6.36 11.97 3.17 7.87 11.02 8.97 3.03 7.83 9.52 12.12 7.69 K intron_retention CG16742 chr2R + chr2R_16511475_16511534 chr2R_16511474_16511475;chr2R_16511534_16511535 chr2R_16511280_16511474;chr2R_16511535_16511674 21.43 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 38.46 NA 8.33 21.43 NA NA NA NA NA 21.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Dyrk3,I_chr4_1231226_1233305,I_chr4_1233845_1234170 chr4 - chr4_1230573_1230624 chr4_1230572_1230573;chr4_1230624_1230625 chr4_1230231_1230572;chr4_1230625_1231068 10.71 8.33 11.76 13.04 4.00 10.71 14.04 18.00 13.43 NA 9.68 11.86 18.18 4.55 4.00 8.62 11.11 8.00 18.92 14.29 0.00 0.00 7.32 8.33 0.00 14.81 13.16 22.73 8.33 0.00 13.16 0.00 10.53 13.64 5.26 10.00 4.76 17.65 9.52 13.04 6.25 14.04 13.79 10.71 4.17 9.09 0.00 13.79 12.31 16.00 16.67 0.00 15.79 17.65 11.36 18.75 3.70 0.00 K alternative_acceptor CG13298,RI_chr3L_6186012_6186064 chr3L - chr3L_6185995_6186064 chr3L_6186012_6186064 chr3L_6186065_6186164;chr3L_6185912_6185994 0.79 0.00 1.37 0.95 0.00 1.61 1.12 0.95 0.00 2.27 0.00 1.50 2.44 2.17 1.59 2.27 3.23 0.00 0.00 0.47 0.00 0.00 0.00 0.75 1.28 0.00 0.84 2.56 1.19 0.00 0.00 0.00 0.86 0.91 1.09 0.00 0.00 1.03 0.68 0.71 0.00 1.97 0.00 0.93 0.79 0.79 0.81 1.01 0.83 0.92 0.72 0.00 0.69 0.00 4.17 1.04 0.68 0.63 K jcn_only_AD CG5850,I_chr2L_9963013_9963451 chr2L - chr2L_9961618_9961794 chr2L_9961618_9961728 chr2L_9961359_9961617;chr2L_9961795_9962059 100.00 100.00 100.00 98.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.86 98.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.12 100.00 100.00 100.00 100.00 100.00 99.30 100.00 100.00 100.00 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD nct,I_chr3R_20679262_20679308 chr3R + chr3R_20679809_20680083 chr3R_20680025_20680083 chr3R_20680084_20680151 100.00 NA NA 100.00 NA NA NA NA 96.30 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.00 NA K jcn_only_AD CG1354,I_chrX_9672972_9673084,I_chrX_9673026_9673084 chrX + chrX_9673026_9673084;chrX_9672947_9673084;chrX_9672972_9673084 chrX_9672967_9673084 chrX_9673085_9673184;chrX_9672926_9672946 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.85 0.00 0.00 1.28 2.04 0.00 0.00 2.02 0.00 1.79 0.00 1.49 0.00 1.61 0.00 0.00 1.09 2.94 0.00 0.00 1.89 3.45 1.08 0.00 1.12 0.00 0.00 0.00 2.22 1.22 1.64 2.22 8.33 1.25 1.10 3.77 1.43 0.00 0.00 N alternative_donor CG15908_CG9410,CG15908,CG9410 chr2R + chr2R_2556730_2556834 chr2R_2556738_2556834 chr2R_2556835_2556939;chr2R_2556598_2556729 30.00 16.67 NA 20.00 40.00 NA 20.00 37.50 37.50 NA 27.27 29.03 NA NA 0.00 26.09 33.33 26.67 NA 24.32 NA 31.25 46.67 31.58 NA NA 14.29 5.00 43.75 36.36 58.06 31.25 40.00 33.33 40.00 23.08 29.41 NA 33.33 27.59 28.57 41.94 NA 25.00 37.50 40.00 38.46 22.73 30.00 29.41 30.00 33.33 42.86 NA 16.67 31.82 23.53 19.05 K alternative_donor I_chrX_2066779_2066838,Cyp4d2,E_chrX_2071218_2072285,Cyp4ae1,pn chrX + chrX_2068074_2071183 chrX_2071097_2071183 chrX_2071184_2071199;chrX_2068005_2068073 50.00 NA NA 66.67 NA NA 100.00 0.00 100.00 NA NA 50.00 50.00 NA NA 50.00 NA NA NA 100.00 NA 33.33 20.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA 0.00 0.00 0.00 50.00 0.00 25.00 50.00 NA 100.00 NA 100.00 NA 0.00 NA NA NA 0.00 50.00 50.00 NA NA NA 0.00 NA NA K intron_retention sda,I_chr3R_22742285_22742350,RI_chr3R_22750984_22752737 chr3R + chr3R_22741631_22742224 chr3R_22741630_22741631;chr3R_22742224_22742225 chr3R_22741498_22741630;chr3R_22742225_22742284 0.00 NA NA NA NA NA NA NA 14.29 0.00 NA 6.25 NA NA NA NA NA NA 7.14 0.00 NA 6.25 0.00 NA NA NA NA NA NA 0.00 0.00 NA 0.00 NA 0.00 0.00 10.53 NA NA 0.00 0.00 10.53 NA 0.00 NA 0.00 0.00 4.00 9.09 NA 0.00 NA NA NA NA 0.00 NA NA N intron_retention Akap200,I_chr2L_8415846_8426873,I_chr2L_8417052_8426873,I_chr2L_8420065_8426872,I_chr2L_8426446_8426873 chr2L + chr2L_8420065_8421966 chr2L_8420064_8420065;chr2L_8421966_8421967 chr2L_8419965_8420064;chr2L_8421967_8422015 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K jcn_only_AA Dscam,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3251271_3255892;chr2R_3253610_3255892;chr2R_3250700_3255892;chr2R_3252685_3255892;chr2R_3251854_3255892;chr2R_3252399_3255892;chr2R_3250996_3255892;chr2R_3254133_3255892;chr2R_3252123_3255892;chr2R_3252988_3255892 chr2R_3254472_3255892 chr2R_3255893_3255920 13.89 18.18 15.38 16.67 12.50 11.90 11.11 19.51 21.43 NA NA 7.79 NA 8.33 23.26 13.33 9.52 NA 27.27 6.67 25.00 22.67 11.54 15.38 15.79 33.33 8.16 4.17 16.28 11.63 13.89 NA 21.82 15.22 20.51 26.92 18.18 16.13 12.31 10.45 NA 31.37 0.00 12.82 NA 13.04 29.63 8.82 3.70 10.00 15.91 13.04 NA NA 8.00 13.04 30.43 NA K intron_retention Keap1 chr3R - chr3R_12902225_12902298 chr3R_12902224_12902225;chr3R_12902298_12902299 chr3R_12901967_12902224;chr3R_12902299_12902615 8.33 NA NA 13.04 NA 0.00 NA 0.00 13.64 2.63 NA 8.00 NA NA 0.00 0.00 NA NA NA 6.25 NA 12.31 6.45 0.00 10.53 NA 10.81 11.76 10.26 8.33 NA 11.11 9.68 0.00 0.00 9.52 12.50 16.67 12.50 8.33 4.35 15.38 NA 13.64 5.88 11.11 0.00 7.27 15.00 0.00 11.11 11.76 NA NA 0.00 NA NA 6.67 K jcn_only_AA Fak56D,F_chr2R_15323055_15323097 chr2R - chr2R_15319746_15319807 chr2R_15319752_15319807 chr2R_15319808_15319897;chr2R_15319297_15319745 100.00 NA 100.00 100.00 100.00 91.30 100.00 98.21 100.00 NA 100.00 100.00 100.00 93.94 100.00 100.00 100.00 100.00 96.00 97.73 NA NA NA NA NA 96.88 100.00 NA NA 95.45 100.00 100.00 96.00 96.72 NA NA NA NA 100.00 96.61 NA 100.00 95.65 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 NA NA NA 91.43 NA NA 97.44 K cassette CG8709,I_chr2R_4027128_4027182,I_chr2R_4027682_4027747,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4027655_4028018 chr2R_4027655_4027747;chr2R_4027877_4028018 chr2R_4027748_4027876 chr2R_4027582_4027654;chr2R_4028019_4028118 100.00 98.65 100.00 98.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.17 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.78 100.00 98.08 100.00 100.00 100.00 100.00 97.83 97.70 98.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.12 100.00 100.00 99.22 100.00 100.00 100.00 100.00 100.00 100.00 99.02 98.04 99.07 100.00 98.28 100.00 100.00 98.53 100.00 98.61 K jcn_only_AD shep,I_chr3L_5157070_5160067,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5160160_5161349 chr3L_5160160_5161343 chr3L_5160068_5160159;chr3L_5161350_5161402 96.12 98.57 95.80 91.53 97.56 92.31 92.93 93.03 94.09 97.37 97.14 96.92 94.03 97.46 96.53 99.01 95.92 94.79 96.04 94.19 95.40 90.79 90.11 98.36 96.55 95.05 97.30 96.88 96.15 95.38 94.55 96.43 93.00 93.16 93.94 97.33 97.06 98.18 98.48 100.00 88.10 96.04 96.58 96.36 96.08 95.65 92.31 NA 92.78 97.78 96.67 96.67 96.23 89.47 97.16 97.14 97.22 90.36 K intron_retention Nup154,I_chr2L_11009331_11009442,I_chr2L_11011380_11011453 chr2L + chr2L_11009378_11009442 chr2L_11009377_11009378;chr2L_11009442_11009443 chr2L_11008911_11009377;chr2L_11009443_11009542 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.26 0.00 0.00 3.12 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_donor Ser,I_chr3R_23013597_23017227 chr3R - chr3R_23017847_23019665 chr3R_23017847_23018224 chr3R_23017228_23017846;chr3R_23019666_23019964 18.18 12.50 42.86 31.25 20.00 11.76 16.67 18.42 15.69 20.00 26.67 16.22 22.73 18.75 14.29 21.43 20.00 80.00 20.00 23.08 14.29 36.36 8.00 26.67 22.22 18.18 29.41 20.00 22.22 9.52 13.33 42.86 20.83 17.14 33.33 23.53 9.38 14.29 13.04 16.67 13.33 17.65 25.00 13.04 18.18 14.29 28.57 11.54 20.00 28.57 17.65 14.29 12.50 14.29 10.71 12.50 22.22 15.38 K intron_retention lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6389735_6389862 chr2R_6389734_6389735;chr2R_6389862_6389863 chr2R_6389602_6389734;chr2R_6389863_6389967 36.84 NA NA NA NA NA 36.84 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG15618 chrX - chrX_19758692_19758760 chrX_19758696_19758760 chrX_19758761_19759042;chrX_19757859_19758691 29.03 22.22 33.33 34.48 25.00 36.67 17.65 25.00 33.82 53.57 NA 22.58 28.57 21.62 25.00 29.03 36.00 29.41 NA 31.08 25.00 NA 31.15 23.91 48.28 27.27 27.59 32.00 NA 47.73 52.31 NA 22.86 25.53 31.82 42.31 33.73 46.94 26.03 34.29 NA 17.81 19.05 27.27 NA 33.33 23.08 38.10 23.91 NA 24.44 24.00 30.30 NA 35.14 NA 24.32 31.82 K alternative_donor Nedd4,RI_chr3L_17523407_17523908,I_chr3L_17523717_17523908,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17523407_17523908 chr3L_17523523_17523908 chr3L_17523909_17524008;chr3L_17523307_17523406 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 97.37 96.77 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 98.28 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 K cassette Jupiter,I_chr3R_7417030_7419354,I_chr3R_7418347_7445425,RI_chr3R_7442793_7445425 chr3R - chr3R_7417030_7419354 chr3R_7417030_7418088;chr3R_7418347_7419354 chr3R_7418089_7418346 chr3R_7416930_7417029;chr3R_7419355_7419454 99.36 99.35 99.58 81.83 99.75 99.47 98.22 99.83 99.06 99.36 99.03 99.66 99.25 98.82 99.26 99.52 98.86 99.75 99.73 99.36 99.11 92.93 99.14 99.49 98.50 98.81 99.38 99.35 96.98 99.83 99.42 99.33 98.98 99.44 99.66 99.83 99.22 98.86 99.41 99.55 98.94 99.26 99.43 99.08 99.16 99.36 99.71 98.85 99.02 99.88 99.53 99.48 99.22 99.48 99.40 99.41 99.86 99.43 K intron_retention MCPH1,RI_chr2R_7790917_7791377 chr2R - chr2R_7790917_7791085 chr2R_7790916_7790917;chr2R_7791085_7791086 chr2R_7790817_7790916;chr2R_7791086_7791309 15.38 15.00 30.00 9.09 28.57 12.50 25.00 15.79 18.42 NA NA 35.71 46.15 20.00 26.67 30.77 20.00 NA 40.00 12.90 14.29 21.05 11.32 12.00 14.29 14.29 0.00 21.88 13.33 13.64 0.00 25.00 22.22 29.17 9.09 16.67 11.86 2.38 14.29 29.41 23.08 19.51 NA 17.24 15.00 21.05 15.38 23.33 10.00 13.04 16.67 10.00 8.70 11.76 26.32 8.33 0.00 11.11 K alternative_acceptor CG17683,I_chr2R_18774_18869 chr2R + chr2R_18774_18851;chr2R_18774_18869 chr2R_18774_18826 chr2R_18768_18773;chr2R_18870_18969 85.00 80.00 66.67 85.00 85.71 83.33 85.00 88.00 90.91 100.00 100.00 94.44 85.71 100.00 90.91 81.25 81.82 100.00 90.91 81.25 80.00 81.82 72.73 66.67 100.00 66.67 91.67 NA 100.00 90.00 78.95 100.00 80.00 88.24 72.73 45.45 100.00 83.33 83.33 83.33 78.57 82.35 91.67 100.00 85.71 72.73 75.00 88.89 93.75 87.50 77.78 75.00 100.00 83.33 93.33 88.89 81.82 84.62 K intron_retention CRMP,I_chr3R_1401648_1403314 chr3R + chr3R_1402982_1403314 chr3R_1402981_1402982;chr3R_1403314_1403315 chr3R_1402913_1402981;chr3R_1403315_1403414 28.57 31.58 35.71 24.14 NA 29.41 20.00 38.10 30.77 NA NA 26.47 NA NA 14.29 36.36 NA 12.50 45.45 29.03 30.77 NA 25.00 11.76 NA 25.00 NA NA NA NA 13.04 NA NA 35.71 NA NA 23.08 25.00 32.14 13.64 36.36 42.11 NA NA 7.69 25.00 25.00 NA 28.57 29.41 23.81 NA NA 30.77 20.00 42.86 30.77 NA K intron_retention brat,I_chr2L_19134277_19143634,EI_chr2L_19145845_19145958,RI_chr2L_19145845_19146761,RI_chr2L_19146877_19146941 chr2L + chr2L_19145845_19166084 chr2L_19145844_19145845;chr2L_19166084_19166085 chr2L_19145819_19145844;chr2L_19166085_19166125 10.53 NA NA 8.00 NA NA NA 19.05 5.00 NA NA NA NA NA NA NA NA NA 10.53 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 6.25 NA NA NA NA NA 11.76 NA 10.53 NA NA NA NA NA NA 12.50 NA NA NA NA NA 13.33 NA NA NA K intron_retention RpS30 chr3R + chr3R_16676666_16676752 chr3R_16676665_16676666;chr3R_16676752_16676753 chr3R_16676577_16676665;chr3R_16676753_16677156 0.03 0.00 0.03 0.12 0.00 0.04 0.03 0.03 0.06 0.00 0.00 0.04 0.00 0.08 0.03 0.03 0.05 0.00 0.08 0.00 0.00 0.03 0.04 0.04 0.04 0.00 0.17 0.28 0.31 0.08 0.00 0.07 0.00 0.05 0.00 0.00 0.03 0.00 0.04 0.03 0.00 0.06 0.00 0.00 0.05 0.05 0.05 0.00 0.09 0.02 0.05 0.03 0.04 0.06 0.00 0.00 0.08 0.02 K intron_retention RI_chr3L_7551797_7643024,CG7506 chr3L - chr3L_7634128_7634185 chr3L_7634127_7634128;chr3L_7634185_7634186 chr3L_7633726_7634127;chr3L_7634186_7634893 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG40228,noncoding_14406,RI_chr3LHet_2190419_2190470 chr3LHet - chr3LHet_2190419_2190556;chr3LHet_2190419_2190563;chr3LHet_2190419_2190470;chr3LHet_2190419_2190561 chr3LHet_2190419_2190548 chr3LHet_2190319_2190418;chr3LHet_2190564_2190570 56.48 52.78 54.55 47.37 70.00 64.29 46.27 51.76 60.42 NA 72.73 53.97 65.62 55.56 64.29 54.62 71.43 50.00 60.87 52.94 66.67 75.00 62.50 57.14 55.56 58.82 57.14 64.29 50.00 60.00 63.64 53.85 50.00 60.49 55.81 52.94 61.54 66.67 66.67 62.79 50.00 58.82 58.82 50.00 54.29 54.22 60.00 51.16 52.38 45.24 55.32 55.56 61.54 60.00 55.26 48.78 60.42 51.56 N jcn_only_AD Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19562143_19562326 chr2R_19562175_19562326 chr2R_19562327_19562386;chr2R_19561937_19562142 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6500437_6500490 chr2R_6500436_6500437;chr2R_6500490_6500491 chr2R_6500242_6500436;chr2R_6500491_6500880 85.71 91.11 83.64 93.85 87.88 85.37 88.89 88.75 88.46 86.27 97.62 83.81 75.68 91.67 85.00 84.48 86.36 85.71 85.71 83.72 97.06 95.65 88.14 83.67 96.55 95.56 89.36 85.19 93.65 78.79 83.93 80.00 86.17 87.06 83.33 97.37 88.73 87.80 80.00 78.99 92.45 85.59 87.80 82.46 73.68 78.57 89.47 80.99 87.00 91.49 84.48 77.14 78.00 82.61 82.35 85.37 77.78 72.22 K intron_retention exba,RI_chr3R_1425087_1425302,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1425087_1426736 chr3R_1425086_1425087;chr3R_1426736_1426737 chr3R_1424987_1425086;chr3R_1426737_1426835 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 2.22 K jcn_only_AD CG9184 chr3L - chr3L_1322703_1322757 chr3L_1322703_1322751 chr3L_1322541_1322702;chr3L_1322758_1322826 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD MSBP,I_chrX_15783766_15784027,RI_chrX_15783766_15784064,I_chrX_15783766_15785978 chrX - chrX_15783766_15784064;chrX_15783766_15783941 chrX_15783766_15784027 chrX_15783666_15783765;chrX_15784065_15784071 0.50 0.00 0.50 0.35 0.00 0.00 0.70 0.55 0.41 0.00 1.25 0.77 0.00 0.49 0.00 0.51 1.82 1.16 0.00 0.21 0.00 0.51 0.32 1.18 1.64 0.00 0.80 0.00 1.96 2.06 0.47 2.48 6.59 0.25 0.00 0.00 1.10 1.75 0.56 0.88 2.78 0.59 1.22 0.36 0.00 1.30 0.73 1.36 0.78 0.67 0.36 0.00 0.00 0.55 0.00 0.00 0.45 0.00 K intron_retention CycK,RI_chr2L_22126776_22130098,I_chr2L_22129837_22129893 chr2L - chr2L_22129899_22130098 chr2L_22129898_22129899;chr2L_22130098_22130099 chr2L_22129894_22129898;chr2L_22130099_22130142 92.86 90.91 92.31 100.00 NA 91.67 94.12 93.10 97.30 NA 100.00 91.18 94.12 93.75 92.86 84.62 91.67 80.00 96.43 94.12 70.00 NA 92.31 100.00 NA 91.67 100.00 100.00 NA 88.89 88.24 84.62 90.91 88.89 100.00 100.00 87.50 NA NA 95.83 92.31 93.10 100.00 92.31 86.67 100.00 100.00 94.74 95.65 92.86 100.00 71.43 88.89 NA 83.33 100.00 91.67 89.47 N intron_retention crol,I_chr2L_11799403_11802904 chr2L - chr2L_11800323_11803784 chr2L_11800322_11800323;chr2L_11803784_11803785 chr2L_11800155_11800322;chr2L_11803785_11803898 100.00 100.00 100.00 69.23 100.00 100.00 100.00 88.31 90.59 100.00 100.00 100.00 100.00 100.00 83.64 100.00 100.00 100.00 100.00 87.50 100.00 81.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 79.31 86.05 85.19 100.00 100.00 85.48 100.00 100.00 100.00 100.00 100.00 78.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Pabp2,I_chr2R_4020297_4020426 chr2R + chr2R_4020297_4020446 chr2R_4020297_4020426 chr2R_4020197_4020296;chr2R_4020447_4020526 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.58 0.00 1.25 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 1.15 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.91 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 K jcn_only_AD CG40228,noncoding_14406,RI_chr3LHet_2190419_2190470 chr3LHet - chr3LHet_2190419_2190556;chr3LHet_2190419_2190548;chr3LHet_2190419_2190470;chr3LHet_2190419_2190561 chr3LHet_2190419_2190563 chr3LHet_2190319_2190418;chr3LHet_2190564_2190570 7.25 12.37 10.10 8.92 2.94 3.49 6.70 7.85 5.74 NA 0.00 7.98 5.56 14.04 10.00 8.92 6.98 11.49 2.78 5.59 5.56 0.00 8.06 8.33 3.92 7.02 8.99 8.82 14.52 2.56 4.73 7.25 13.64 5.77 6.02 5.75 NA 4.44 4.62 5.41 6.31 8.67 4.35 6.25 7.55 8.37 12.31 8.06 8.81 10.23 12.07 2.00 9.09 4.35 8.11 11.30 6.50 8.12 K alternative_acceptor CG6762,I_chrX_17751392_17751499,I_chrX_17751392_17751520 chrX + chrX_17751392_17751524;chrX_17751392_17751535 chrX_17751392_17751505 chrX_17751292_17751391;chrX_17751536_17751560 59.26 75.00 62.50 68.75 57.14 56.25 61.54 75.00 63.33 75.00 66.67 69.23 62.50 50.00 53.85 50.00 80.00 60.00 42.86 67.86 81.82 61.11 72.73 56.25 55.56 90.91 50.00 56.25 68.75 50.00 58.82 64.29 59.09 56.25 55.56 85.71 69.23 45.45 52.94 59.26 57.14 71.43 62.50 63.64 46.67 44.00 46.15 50.00 62.96 53.33 46.15 33.33 58.82 80.00 69.23 76.92 57.89 50.00 K alternative_acceptor Hcs,I_chr3R_1303481_1304607 chr3R + chr3R_1303481_1304625 chr3R_1303481_1304607 chr3R_1303381_1303480;chr3R_1304626_1304707 46.15 NA NA 88.89 NA NA 63.64 55.56 41.67 50.00 50.00 40.00 36.36 NA NA NA NA 46.15 36.36 41.67 NA 55.56 41.38 50.00 NA NA 40.00 NA NA 46.15 41.67 NA 66.67 38.46 NA 55.56 52.94 44.44 35.00 60.00 NA 35.71 NA 41.67 54.55 NA 60.00 NA 62.50 46.15 50.00 46.15 25.00 29.41 23.08 NA 40.00 NA K alternative_acceptor Vha100-1,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24962422_24962803 chr3R_24962422_24962797 chr3R_24962326_24962421;chr3R_24962804_24962897 100.00 98.36 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 98.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.12 100.00 98.41 100.00 98.80 100.00 100.00 100.00 96.67 98.00 96.30 98.04 100.00 100.00 100.00 100.00 100.00 98.33 98.33 100.00 100.00 100.00 98.91 96.67 100.00 98.44 98.57 100.00 100.00 100.00 100.00 100.00 100.00 98.48 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA MEP-1,CG42245,CG1143 chr3L + chr3L_2631917_2633537 chr3L_2631917_2631976 chr3L_2631720_2631916 100.00 100.00 100.00 90.91 100.00 100.00 97.06 100.00 100.00 NA NA 98.81 100.00 100.00 96.36 100.00 100.00 100.00 98.41 98.25 100.00 100.00 100.00 97.50 100.00 100.00 97.44 NA NA NA 98.33 NA 100.00 98.65 100.00 100.00 NA NA 100.00 100.00 NA 98.88 96.97 NA NA NA 100.00 NA 100.00 96.43 97.56 100.00 100.00 NA 96.23 100.00 100.00 NA K intron_retention bmm,I_chr3L_14772123_14772190 chr3L - chr3L_14772123_14772933 chr3L_14772122_14772123;chr3L_14772933_14772934 chr3L_14772023_14772122;chr3L_14772934_14772998 54.55 NA NA 50.00 58.33 NA 50.00 64.29 50.00 NA NA 58.82 66.67 NA 54.55 66.67 NA NA 46.15 54.55 NA NA NA NA NA NA NA NA NA NA NA NA NA 52.63 NA NA NA NA NA 45.45 NA 72.22 NA 60.00 NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA K intron_retention eas,REI_chrX_16172581_16177702 chrX + chrX_16178795_16179054 chrX_16178794_16178795;chrX_16179054_16179055 chrX_16178345_16178794;chrX_16179055_16179436 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 6.67 0.00 2.08 0.00 1.82 3.17 0.00 0.00 0.00 3.12 0.65 0.00 0.00 3.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 3.57 0.00 3.70 0.00 2.44 2.35 2.63 0.92 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 0.00 0.00 0.00 2.78 0.00 2.44 0.00 K intron_retention dlg1,I_chrX_11298230_11299306 chrX + chrX_11293850_11299306 chrX_11293849_11293850;chrX_11299306_11299307 chrX_11293775_11293849;chrX_11299307_11299406 0.00 0.00 0.00 0.00 0.00 0.00 3.38 0.00 5.74 0.00 0.00 0.00 0.00 1.72 2.78 1.80 0.00 0.00 0.00 3.60 1.06 0.00 1.67 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 1.77 0.00 0.00 0.79 0.00 0.00 1.04 1.96 1.85 0.00 1.56 0.00 0.00 0.00 0.67 1.94 0.00 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG3662,I_chr2L_822032_822857 chr2L + chr2L_824138_824218 chr2L_824138_824190 chr2L_823637_824137;chr2L_824219_824354 76.09 76.19 63.83 91.40 73.53 63.16 75.73 73.08 80.68 93.75 76.00 78.85 73.53 73.77 72.00 77.14 76.09 73.81 67.74 73.50 68.75 61.45 86.54 70.00 85.71 80.95 66.10 40.62 80.00 76.32 66.67 77.01 88.68 73.26 72.00 93.88 68.00 67.86 46.67 73.17 84.62 77.32 82.50 69.64 79.73 83.33 80.00 85.00 81.31 67.74 76.92 81.58 78.57 77.78 71.64 73.58 83.67 83.87 N intron_retention vir-1,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,I_chr2L_12421830_12423260 chr2L - chr2L_12421902_12423322 chr2L_12421901_12421902;chr2L_12423322_12423323 chr2L_12421641_12421901;chr2L_12423323_12423328 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 56.00 NA NA 100.00 100.00 35.71 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA 100.00 100.00 58.82 NA NA NA NA NA NA NA K jcn_only_AD CG8202 chr3R + chr3R_4558029_4558091 chr3R_4558033_4558091 chr3R_4558092_4558205;chr3R_4557938_4558028 3.20 0.00 7.69 2.06 2.00 1.32 1.75 1.59 0.95 2.44 3.45 3.15 4.00 0.00 3.66 3.03 0.00 1.79 1.82 2.68 1.79 5.63 7.77 5.56 1.82 4.23 2.13 4.17 1.30 4.65 6.25 4.00 0.81 2.74 7.04 4.23 3.17 2.17 3.20 5.36 5.00 3.29 2.33 5.13 1.69 6.35 3.70 7.96 1.59 3.64 4.26 3.57 5.00 6.38 2.47 5.80 1.82 5.77 K cassette Ect4,I_chr3L_8075556_8086158,I_chr3L_8089973_8090123,I_chr3L_8089977_8091445,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8089977_8091445;chr3L_8089973_8091445 chr3L_8089973_8090070,chr3L_8089977_8090070;chr3L_8090273_8091445 chr3L_8090071_8090272 chr3L_8089959_8089972;chr3L_8091446_8091545 73.33 70.00 68.97 71.19 50.00 60.87 77.78 76.92 68.75 NA 56.25 68.63 64.71 69.23 62.50 85.11 83.33 73.08 62.16 67.24 66.67 40.00 78.26 73.08 84.62 65.00 75.00 85.71 71.43 91.67 61.90 66.67 88.89 77.36 89.47 85.19 72.00 73.33 90.91 79.41 85.71 79.07 68.18 88.24 62.50 80.00 72.73 78.95 73.33 75.00 79.49 92.31 90.91 88.89 80.00 90.00 71.43 71.43 K alternative_donor lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3955586_3957375;chr2R_3955788_3957375;chr2R_3955517_3957375 chr2R_3955872_3957375 chr2R_3957376_3957784;chr2R_3955509_3955516 1.66 0.00 1.72 1.23 1.75 0.00 4.00 0.00 1.38 12.50 0.00 2.17 0.00 0.00 1.30 2.04 0.00 1.82 3.85 1.02 0.00 0.00 12.50 0.00 12.50 3.57 37.50 28.57 13.04 5.56 4.48 0.00 3.70 1.11 0.00 14.29 0.00 0.00 10.00 10.42 6.25 1.60 2.00 7.14 0.00 0.00 NA 7.41 1.23 NA 50.00 0.00 0.00 NA 1.23 NA NA 3.70 K intron_retention CG14709,F_chr3R_7396835_7396923,F_chr3R_7405343_7405539 chr3R + chr3R_7399585_7399651 chr3R_7399584_7399585;chr3R_7399651_7399652 chr3R_7397990_7399584;chr3R_7399652_7401293 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.47 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.93 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention spz chr3R - chr3R_22891754_22891820 chr3R_22891753_22891754;chr3R_22891820_22891821 chr3R_22891685_22891753;chr3R_22891821_22891889 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.10 0.00 0.00 0.30 0.00 0.00 0.00 0.18 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 1.53 2.88 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.39 0.31 0.00 0.22 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.13 K intron_retention I_chrX_1962457_1964222,CG4045 chrX - chrX_1969173_1969239 chrX_1969172_1969173;chrX_1969239_1969240 chrX_1969071_1969172;chrX_1969240_1969651 4.72 4.32 1.19 7.78 0.00 5.97 3.20 3.31 4.95 2.70 1.98 6.06 8.45 2.60 6.02 5.88 0.00 11.24 5.13 2.93 3.49 37.50 5.48 5.04 0.00 3.66 7.77 11.63 8.47 4.44 7.95 4.41 13.21 4.72 5.00 4.00 1.88 4.08 4.55 5.32 9.09 4.29 4.35 3.03 4.94 5.26 6.25 7.69 2.14 3.21 5.11 5.62 7.06 4.76 4.08 3.64 2.16 2.50 K intron_retention CG15618 chrX - chrX_19755470_19755539 chrX_19755469_19755470;chrX_19755539_19755540 chrX_19755305_19755469;chrX_19755540_19757791 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor RpS12,I_chr3L_13016626_13017469 chr3L + chr3L_13016494_13016587 chr3L_13016494_13016582 chr3L_13016470_13016493;chr3L_13016588_13016625 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG5455,I_chr3R_22287369_22288750 chr3R + chr3R_22292793_22292859;chr3R_22292793_22292853 chr3R_22292793_22292855 chr3R_22292336_22292792;chr3R_22292860_22293068 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG12404,I_chr2L_12994238_12995342,I_chr2L_12995561_12997461 chr2L - chr2L_12994238_12997461 chr2L_12994237_12994238;chr2L_12997461_12997462 chr2L_12994138_12994237;chr2L_12997462_12997561 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 1.03 0.50 0.00 0.00 0.00 0.91 0.00 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.82 0.00 0.40 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor gw,I_chr4_679135_681671,noncoding_20755 chr4 - chr4_682607_683578;chr4_682607_683702 chr4_682607_683596 chr4_682360_682606;chr4_683703_683710 6.25 NA NA 12.50 NA NA NA 0.00 16.67 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K cassette CG17646,RI_chr2L_1747861_1749517,E_chr2L_1749256_1749517 chr2L + chr2L_1747861_1749517 chr2L_1747861_1748773;chr2L_1748875_1749517 chr2L_1748774_1748874 chr2L_1747853_1747860;chr2L_1749518_1749531 93.33 100.00 NA 75.00 NA NA 100.00 100.00 86.67 NA NA 100.00 NA NA NA 100.00 NA NA 100.00 90.00 NA 100.00 92.31 100.00 88.89 NA 100.00 NA NA 100.00 83.33 NA 87.50 100.00 NA NA 100.00 100.00 90.91 92.31 NA 90.00 NA 100.00 100.00 88.89 87.50 90.00 92.86 93.33 100.00 100.00 NA NA NA 88.89 90.91 85.71 K jcn_only_AD CG4877 chr3L + chr3L_16379595_16379731 chr3L_16379671_16379731 chr3L_16379732_16380052;chr3L_16379486_16379594 72.73 NA NA NA NA NA NA NA NA NA NA 72.73 NA NA NA NA NA NA NA 75.00 NA NA 72.73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.65 NA NA NA NA 70.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG33298 chr2L + chr2L_9496256_9503595 chr2L_9496256_9503592 chr2L_9496148_9496255;chr2L_9503596_9504813 92.75 95.45 96.43 90.48 95.00 NA 85.71 93.42 90.32 NA 100.00 94.00 83.78 97.22 90.91 94.87 95.00 92.59 87.23 81.08 90.00 NA NA NA NA NA NA NA NA NA 88.10 NA NA 87.84 100.00 NA NA NA NA NA NA 98.31 92.31 NA NA NA NA NA 92.75 NA NA NA NA NA 97.22 NA NA NA K jcn_only_AD Taz,I_chr2R_8641602_8641912,I_chr2R_8641633_8641971,I_chr2R_8648027_8648303 chr2R - chr2R_8641633_8641971 chr2R_8641633_8641912 chr2R_8641533_8641632;chr2R_8641972_8642012 100.00 100.00 100.00 96.83 100.00 100.00 97.83 100.00 100.00 100.00 100.00 98.59 100.00 96.88 96.88 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 81.08 97.44 100.00 100.00 97.62 100.00 100.00 100.00 98.55 98.31 98.81 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 95.24 98.84 95.08 98.15 100.00 100.00 96.15 100.00 98.31 97.96 100.00 K jcn_only_AA CG30007 chr2R + chr2R_5782197_5782254 chr2R_5782197_5782251 chr2R_5781860_5782196;chr2R_5782255_5782701 56.60 NA NA 52.94 NA NA 52.17 66.67 60.00 NA NA 51.43 NA NA 52.38 63.89 62.50 NA 65.00 56.60 NA NA 64.00 68.18 NA 47.62 44.44 57.14 NA NA 59.38 NA NA 66.67 NA NA 54.55 NA NA 36.00 NA 59.09 NA 52.38 NA NA NA NA 55.17 NA NA NA NA NA 53.33 NA NA NA K mutually_exclusive I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499338_1500244,chr3L_1500389_1501798;chr3L_1499338_1501345,chr3L_1501398_1501798 chr3L_1499338_1499771,chr3L_1499880_1501798 chr3L_1500245_1500388;chr3L_1501346_1501397 chr3L_1499772_1499879 chr3L_1499043_1499337;chr3L_1501799_1501892 9.09 NA 20.00 30.00 NA NA NA 18.18 8.33 0.00 0.00 15.38 NA NA 0.00 18.18 NA NA 14.29 8.33 NA 0.00 22.22 0.00 14.29 28.57 0.00 25.00 NA 0.00 0.00 NA 20.00 11.11 0.00 0.00 NA NA 40.00 22.22 0.00 8.33 NA 0.00 0.00 0.00 NA 11.11 9.09 28.57 22.22 0.00 NA 0.00 12.50 16.67 25.00 0.00 K mutually_exclusive CG15279,F_chr2L_14847018_14848004,F_chr2L_14848345_14848673,I_chr2L_14849367_14851281 chr2L - chr2L_14846495_14848004,chr2L_14848255_14848673 chr2L_14846495_14846789,chr2L_14847058_14848673 chr2L_14848005_14848254 chr2L_14846790_14847057 chr2L_14845753_14846494;chr2L_14848674_14848687 100.00 NA NA 83.33 NA NA NA 100.00 100.00 NA NA 80.00 NA 100.00 NA 100.00 NA NA NA 83.33 100.00 81.82 100.00 75.00 NA 100.00 100.00 85.71 85.71 83.33 100.00 100.00 80.00 100.00 NA 80.00 100.00 NA NA 87.50 100.00 100.00 NA 83.33 NA 100.00 NA 100.00 85.71 100.00 100.00 NA NA NA NA NA 100.00 100.00 K intron_retention CG9293,RI_chr2L_13386386_13386487,I_chr2L_13394941_13395015 chr2L - chr2L_13386258_13386487 chr2L_13386257_13386258;chr2L_13386487_13386488 chr2L_13386099_13386257;chr2L_13386488_13386508 40.27 NA NA 70.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.53 K jcn_only_AA CG3091,I_chrX_2147635_2147990 chrX - chrX_2147635_2147990 chrX_2147644_2147990 chrX_2147991_2148090;chrX_2147535_2147634 100.00 100.00 98.89 100.00 100.00 100.00 100.00 99.39 100.00 100.00 100.00 100.00 100.00 100.00 99.22 99.27 100.00 100.00 100.00 99.52 100.00 100.00 98.99 100.00 100.00 98.59 98.96 96.88 100.00 98.65 99.48 100.00 100.00 99.30 100.00 100.00 98.95 100.00 100.00 98.63 100.00 100.00 97.83 100.00 100.00 99.39 100.00 100.00 98.87 98.08 100.00 100.00 98.08 100.00 100.00 99.12 100.00 100.00 K jcn_only_AA LIMK1,CG1824,I_chrX_12488942_12489000 chrX - chrX_12488926_12489000 chrX_12488942_12489000 chrX_12489001_12489100;chrX_12488842_12488925 6.38 1.69 12.50 3.08 7.02 0.00 0.00 5.08 5.45 10.34 2.38 4.60 8.11 0.00 0.00 7.14 14.29 7.32 4.76 5.95 2.38 11.76 4.71 8.86 17.39 8.57 4.17 10.34 10.99 8.57 6.25 8.54 8.45 1.52 11.90 11.00 10.08 1.39 7.14 4.82 9.33 6.90 3.85 7.00 4.88 3.03 2.94 5.18 4.48 14.71 7.29 6.38 3.77 11.76 3.23 6.90 6.67 5.60 K intron_retention I_chr3R_17177101_17200781,mod(mdg4),RI_chr3R_17183087_17183245,RI_chr3R_17183087_17183726,I_chr3R_17183481_17200781,I_chr3R_17183927_17184513,I_chr3R_17183927_17185306,RI_chr3R_17184319_17184513,I_chr3R_17184319_17185084,I_chr3R_17184319_17185284,noncoding_18168,RI_chr3R_17184792_17185306,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,RI_chr3R_17189607_17189988,I_chr3R_17190098_17190207,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17183087_17183197 chr3R_17183086_17183087;chr3R_17183197_17183198 chr3R_17183072_17183086;chr3R_17183198_17183473 10.53 NA NA 22.22 NA NA 0.00 12.50 11.76 NA NA 17.65 NA NA NA NA NA NA NA 25.00 NA NA 7.14 NA NA NA 0.00 NA NA 6.67 3.45 NA NA NA NA NA NA NA NA NA NA 23.53 NA NA NA NA NA NA 10.53 0.00 NA NA NA NA NA NA NA NA K cassette cora,I_chr2R_15125277_15130573,I_chr2R_15125940_15130208,I_chr2R_15129291_15129988 chr2R + chr2R_15129901_15130208 chr2R_15129901_15129994;chr2R_15130091_15130208 chr2R_15129995_15130090 chr2R_15129679_15129900;chr2R_15130209_15130308 99.08 98.91 98.05 98.67 98.37 98.84 88.89 100.00 98.53 99.26 98.69 97.21 94.34 99.39 99.55 99.40 99.48 99.55 99.44 99.24 99.08 99.79 99.12 99.70 99.48 93.64 99.61 97.33 97.63 98.81 99.43 98.63 98.87 98.95 99.11 96.75 98.91 99.16 99.51 98.58 98.23 99.04 99.35 99.62 98.04 99.70 100.00 99.02 98.79 98.36 98.84 99.34 99.56 99.64 99.40 99.67 99.32 98.61 K intron_retention gry,I_chr3L_3202203_3209859 chr3L + chr3L_3201908_3202008 chr3L_3201907_3201908;chr3L_3202008_3202009 chr3L_3201473_3201907;chr3L_3202009_3202202 0.00 0.00 0.00 4.62 0.00 0.00 0.72 1.20 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 1.27 1.48 1.08 2.38 2.16 0.00 5.19 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.95 1.35 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG34417,I_chrX_6471146_6471201,I_chrX_6477377_6479725,I_chrX_6481112_6482099,RI_chrX_6482284_6482336 chrX + chrX_6479984_6482099 chrX_6479984_6480989;chrX_6481138_6482099 chrX_6480990_6481137 chrX_6479881_6479983;chrX_6482100_6482199 5.79 6.25 0.00 0.00 0.00 6.67 5.00 7.14 6.06 NA NA 9.38 NA 10.53 0.00 0.00 0.00 NA 4.17 7.41 0.00 9.52 7.41 5.00 NA 0.00 4.00 NA NA 14.29 4.76 NA 7.69 4.76 7.69 NA 5.71 0.00 6.67 2.86 NA 10.81 NA 6.67 10.53 9.09 4.76 15.00 8.70 11.11 3.45 NA NA 7.69 0.00 4.00 5.88 0.00 K mutually_exclusive Nmda1,R_chr2R_8766216_8766562,I_chr2R_8766652_8766956,I_chr2R_8766728_8766791,I_chr2R_8766728_8767623 chr2R - chr2R_8766216_8766701,chr2R_8766728_8767193 chr2R_8766216_8766556,chr2R_8766652_8767193 chr2R_8766702_8766727 chr2R_8766557_8766651 chr2R_8766116_8766215;chr2R_8767194_8767290 36.36 36.36 43.75 21.05 33.33 36.36 31.25 30.43 27.27 50.00 36.36 47.62 44.44 22.22 50.00 53.85 14.29 60.00 28.57 34.15 36.36 60.00 42.86 55.56 33.33 36.36 44.44 42.86 33.33 66.67 33.33 NA 37.50 41.18 50.00 NA 56.25 53.85 41.18 15.00 NA 45.16 28.57 26.32 42.86 36.36 18.18 40.00 33.33 36.36 29.41 36.36 28.57 14.29 25.00 45.45 45.45 NA K intron_retention Aats-ala chr2L - chr2L_8381453_8381679 chr2L_8381452_8381453;chr2L_8381679_8381680 chr2L_8380448_8381452;chr2L_8381680_8381706 1.20 1.23 1.42 1.20 0.00 0.60 4.00 1.32 1.20 0.00 0.94 1.57 1.55 2.17 0.49 0.70 2.08 0.00 1.01 1.28 0.82 3.79 1.92 7.69 2.20 1.40 4.29 1.69 3.04 1.60 0.95 0.00 2.14 1.78 6.67 9.00 0.83 5.00 2.80 0.78 1.20 0.67 0.00 1.80 0.56 0.00 2.08 0.62 1.04 0.00 0.00 1.19 0.00 0.00 0.50 0.00 0.00 0.93 N alternative_donor Tsp42Ed chr2R - chr2R_2898360_2899096 chr2R_2898360_2898498 chr2R_2898168_2898359;chr2R_2899097_2899359 2.38 2.63 1.43 5.30 2.38 3.74 4.41 3.70 2.78 1.54 3.90 1.43 3.61 2.61 2.96 2.70 2.50 4.35 2.61 2.15 1.94 2.22 3.87 2.44 2.88 1.79 2.92 6.56 3.21 2.38 3.04 2.50 1.94 3.09 1.32 1.47 1.83 1.92 1.91 3.88 1.94 1.85 1.89 3.23 1.90 1.59 1.73 1.88 1.94 1.95 2.50 2.88 1.57 1.54 2.13 2.82 1.05 1.20 K alternative_donor S2P,I_chr2R_7731333_7731381 chr2R - chr2R_7731333_7731383 chr2R_7731333_7731381 chr2R_7731233_7731332;chr2R_7731384_7731481 2.33 4.44 3.28 1.27 3.12 0.00 1.37 2.22 3.09 0.00 0.00 0.00 3.45 0.00 2.38 2.74 0.00 0.00 2.00 2.89 2.33 3.51 3.23 2.00 0.00 3.92 5.13 15.38 2.67 0.00 3.64 0.00 1.61 4.00 5.00 0.00 5.00 0.00 2.00 1.45 0.00 3.61 5.71 0.00 1.92 2.70 0.00 3.30 2.53 5.71 3.51 0.00 0.00 3.03 3.39 0.00 2.63 1.61 K intron_retention Atx-1_CG4542,Smg1 chrX + chrX_6719453_6719522 chrX_6719452_6719453;chrX_6719522_6719523 chrX_6719089_6719452;chrX_6719523_6721782 0.00 0.00 0.00 5.00 0.00 0.00 0.00 3.92 2.50 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 5.13 0.00 0.00 0.00 0.00 6.67 14.29 0.00 0.00 3.51 NA 0.00 0.00 4.76 0.00 0.00 0.00 2.94 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 K alternative_acceptor CG5872,RI_chr3L_20430213_20430346,RI_chr3L_20430213_20430358 chr3L + chr3L_20430213_20430346;chr3L_20430213_20430358 chr3L_20430213_20430353 chr3L_20430113_20430212;chr3L_20430359_20430446 71.43 NA NA NA NA NA NA NA 71.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA NA NA 71.43 NA NA NA NA NA NA NA NA 75.00 NA NA NA 71.43 NA 68.75 77.78 NA NA NA NA NA NA NA NA 64.71 K jcn_only_AD CG11880,I_chr3R_24949827_24951052,CE_chr3R_24962426_24962797 chr3R + chr3R_24949202_24949522;chr3R_24949212_24949522 chr3R_24949222_24949522 chr3R_24949523_24949826;chr3R_24949179_24949201 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.70 0.44 0.00 0.00 0.00 1.12 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 NA 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 K intron_retention 4EHP,RI_chr3R_19927769_19928262,Syx1A chr3R - chr3R_19927769_19928262 chr3R_19927768_19927769;chr3R_19928262_19928263 chr3R_19927676_19927768;chr3R_19928263_19928283 96.67 100.00 90.00 96.67 NA 90.00 96.55 97.62 96.55 NA 100.00 100.00 NA 100.00 NA 97.73 NA 87.50 92.31 94.44 88.89 88.89 100.00 NA NA 100.00 90.91 NA NA NA 92.86 NA NA 95.65 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 96.77 NA 100.00 NA NA NA NA NA 100.00 NA K intron_retention CG33097,I_chr3R_2191538_2191675,I_chr3R_2199103_2199426 chr3R - chr3R_2193554_2193619 chr3R_2193553_2193554;chr3R_2193619_2193620 chr3R_2192070_2193553;chr3R_2193620_2194010 21.05 21.43 28.57 12.90 26.67 16.67 21.74 19.35 17.95 19.44 24.00 18.33 24.14 20.59 21.43 21.43 13.16 23.26 21.05 13.16 25.00 21.82 20.29 22.03 16.28 19.05 25.00 24.24 11.84 12.70 9.59 8.33 10.98 20.69 18.92 35.29 19.40 18.37 21.05 22.97 24.44 20.51 25.81 20.37 20.00 23.08 35.48 8.60 25.35 32.65 20.83 29.41 35.48 36.84 16.28 25.58 36.96 26.56 K alternative_acceptor CG14903,RI_chr3R_12399116_12399254 chr3R - chr3R_12399116_12399254 chr3R_12399123_12399254 chr3R_12399255_12399354;chr3R_12399016_12399115 98.04 97.44 100.00 100.00 100.00 96.15 97.30 97.83 98.39 94.44 100.00 98.04 95.45 100.00 94.87 96.97 95.00 97.06 96.43 97.40 96.77 100.00 100.00 97.96 100.00 92.31 100.00 100.00 96.67 94.44 96.97 97.06 100.00 100.00 100.00 100.00 97.06 100.00 100.00 98.15 96.00 96.77 100.00 100.00 100.00 95.65 98.28 100.00 100.00 98.11 97.67 96.30 100.00 97.78 97.14 100.00 98.46 98.04 K alternative_donor Dcp2,F_chr3L_15815909_15816023,F_chr3L_15817090_15817547 chr3L - chr3L_15817090_15819385;chr3L_15817090_15817547 chr3L_15817090_15818570 chr3L_15816990_15817089;chr3L_15819386_15819487 93.06 96.67 93.06 86.47 86.27 91.53 92.48 92.12 95.61 66.67 86.79 86.96 88.89 89.16 94.94 93.10 96.05 90.91 96.84 88.82 89.66 76.39 93.26 95.92 86.96 86.25 91.67 95.00 81.25 93.44 86.90 95.45 91.76 94.23 96.00 89.55 93.75 95.56 93.62 95.65 76.92 91.72 90.24 95.83 94.12 97.37 93.75 92.71 94.16 90.48 94.20 95.92 94.12 84.21 93.75 91.67 94.44 94.59 K intron_retention His3_3B,I_chrX_9048270_9048412,I_chrX_9048719_9050368,RI_chrX_9050411_9050612 chrX - chrX_9048274_9048412 chrX_9048273_9048274;chrX_9048412_9048413 chrX_9047271_9048273;chrX_9048413_9048512 0.00 0.00 0.11 0.25 0.00 0.00 0.08 0.00 0.04 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.13 0.07 0.07 0.00 0.00 0.14 0.34 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.09 0.00 0.11 0.00 0.17 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Top2,I_chr2L_19452310_19453250,I_chr2L_19452794_19453250 chr2L - chr2L_19452316_19453250 chr2L_19452794_19453250 chr2L_19453251_19453350;chr2L_19452216_19452315 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.85 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.72 0.00 0.47 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3198,I_chrX_6566369_6566452 chrX - chrX_6563571_6565606 chrX_6563570_6563571;chrX_6565606_6565607 chrX_6563516_6563570;chrX_6565607_6565659 36.36 NA NA 41.18 NA NA 31.58 NA 30.77 NA NA 66.67 35.71 NA NA 23.81 NA NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA 33.33 NA NA NA NA NA 36.36 NA NA NA K intron_retention CG15011 chr3L - chr3L_4257521_4257583 chr3L_4257520_4257521;chr3L_4257583_4257584 chr3L_4257312_4257520;chr3L_4257584_4257715 4.76 NA 6.67 12.50 NA 0.00 12.00 0.00 0.00 NA 16.67 3.85 NA 14.29 0.00 14.81 15.38 13.33 0.00 7.69 NA 0.00 6.45 NA 0.00 NA 6.67 NA NA NA 22.22 NA NA 8.00 NA NA 0.00 0.00 4.76 4.76 NA 15.62 NA 0.00 NA NA 0.00 NA 5.26 0.00 0.00 NA NA 0.00 NA NA 10.53 NA K intron_retention Ptp99A,I_chr3R_25302126_25302175 chr3R + chr3R_25309466_25309678 chr3R_25309465_25309466;chr3R_25309678_25309679 chr3R_25309191_25309465;chr3R_25309679_25310173 94.12 94.44 94.74 96.15 93.33 100.00 96.15 87.88 92.45 88.89 95.00 79.31 100.00 95.00 95.83 77.27 100.00 88.89 94.12 98.28 100.00 75.96 86.67 92.68 87.50 100.00 92.86 94.74 97.44 91.30 90.48 85.19 96.30 96.30 96.55 95.24 92.21 100.00 90.91 94.92 74.07 79.55 94.12 86.27 78.05 93.75 94.12 89.09 97.44 92.86 95.35 93.75 96.77 95.45 96.55 100.00 91.89 93.10 K intron_retention vimar,CG30156 chr2R - chr2R_2869415_2869473 chr2R_2869414_2869415;chr2R_2869473_2869474 chr2R_2869362_2869414;chr2R_2869474_2869533 14.72 23.81 12.50 NA NA NA 21.43 NA 15.15 NA 20.00 26.09 NA NA 0.00 NA NA NA NA 19.35 NA 35.71 22.22 13.04 NA NA 17.65 26.67 NA NA NA NA 14.29 15.79 18.18 NA 4.55 6.25 0.00 9.09 NA 35.29 NA NA NA 9.09 10.53 NA 9.52 22.22 13.64 NA NA 14.29 6.25 16.67 6.67 NA N alternative_acceptor Hrb98DE,RI_chr3R_24429041_24431183,RI_chr3R_24430202_24430258 chr3R + chr3R_24429421_24429573;chr3R_24429421_24429782 chr3R_24429421_24431183 chr3R_24429330_24429420;chr3R_24431184_24431283 2.04 1.44 1.23 0.97 2.29 2.36 1.16 1.35 1.75 0.85 0.00 4.76 3.61 2.63 1.48 1.22 0.72 3.04 0.29 1.20 0.00 0.29 3.17 2.98 0.55 0.38 1.28 0.44 2.14 4.12 3.48 2.76 1.72 1.28 3.08 2.06 2.98 2.17 2.78 4.40 0.35 1.72 0.38 2.57 6.29 2.68 3.65 2.04 1.90 1.06 2.30 1.41 7.57 2.24 1.17 2.42 4.57 5.63 K alternative_acceptor CG15747 chrX + chrX_13234461_13234550 chrX_13234461_13234519 chrX_13234198_13234460;chrX_13234551_13235028 88.89 NA NA 90.91 NA NA 100.00 83.33 100.00 NA NA 100.00 87.50 NA NA 84.21 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 88.89 NA NA 100.00 NA NA NA NA NA NA NA 87.50 100.00 NA NA NA NA 87.50 88.89 87.50 NA NA NA NA NA NA NA NA K intron_retention CG32685,CREI_chrX_9967445_9972518 chrX - chrX_9966834_9967333 chrX_9966833_9966834;chrX_9967333_9967334 chrX_9966782_9966833;chrX_9967334_9967444 0.00 1.89 4.17 0.00 0.00 0.00 4.55 3.57 3.66 0.00 0.00 2.04 0.00 0.00 7.14 0.00 0.00 0.00 0.00 5.71 12.50 0.00 1.12 2.86 10.00 0.00 4.17 0.00 0.00 3.92 6.25 0.00 1.10 0.00 2.22 0.00 1.85 0.00 2.44 1.12 0.00 2.90 0.00 0.00 0.00 2.35 1.85 0.00 6.45 1.83 2.30 0.00 0.00 0.00 0.00 2.50 0.00 1.10 K intron_retention sno chrX - chrX_13093979_13094037 chrX_13093978_13093979;chrX_13094037_13094038 chrX_13093572_13093978;chrX_13094038_13094423 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention Bmcp,RI_chr3L_11714462_11715104 chr3L + chr3L_11715633_11715688 chr3L_11715632_11715633;chr3L_11715688_11715689 chr3L_11715572_11715632;chr3L_11715689_11716239 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.94 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 K alternative_donor CG31689,I_chr2L_2730373_2736310,I_chr2L_2730470_2736310,RI_chr2L_2736137_2736310,I_chr2L_2736230_2736310,I_chr2L_2736431_2737036 chr2L + chr2L_2730373_2736173 chr2L_2730470_2736173 chr2L_2736174_2736229;chr2L_2730370_2730372 33.33 21.05 52.94 29.17 54.55 28.57 33.33 25.81 36.36 NA 36.36 30.00 39.13 47.83 41.18 42.86 26.09 46.15 41.38 48.28 36.36 NA 32.43 31.58 35.71 36.84 23.08 41.67 14.29 35.00 42.11 NA 50.00 26.83 36.84 35.00 30.77 25.00 33.33 21.43 30.00 35.48 28.57 30.00 NA 20.00 NA 41.18 42.86 15.00 22.73 33.33 18.18 NA 28.57 25.00 25.00 36.36 K intron_retention CG9170 chrX - chrX_15876723_15876794 chrX_15876722_15876723;chrX_15876794_15876795 chrX_15876397_15876722;chrX_15876795_15876950 88.89 90.91 88.89 75.00 NA NA 90.91 85.71 81.48 NA NA 78.95 NA 90.00 76.92 92.31 88.89 NA 90.91 89.47 90.91 93.75 94.44 91.67 93.75 NA 87.50 75.00 91.67 76.92 88.24 NA 91.30 93.33 90.00 77.78 94.74 81.25 89.47 88.00 NA 84.00 88.89 94.12 NA 88.89 90.91 NA 92.86 90.91 73.08 63.64 88.89 77.78 64.29 90.91 78.57 88.89 K mutually_exclusive CG8079,I_chr2R_11109323_11109403 chr2R + chr2R_11109329_11109548,chr2R_11109931_11110001 chr2R_11109329_11109403,chr2R_11109486_11110001 chr2R_11109549_11109930 chr2R_11109404_11109485 chr2R_11109233_11109328;chr2R_11110002_11110367 7.69 0.00 9.09 5.00 0.00 0.00 18.18 15.79 4.35 14.29 11.11 5.00 25.00 20.00 8.33 0.00 12.50 15.38 0.00 6.25 7.69 6.25 0.00 14.29 12.50 7.69 10.53 0.00 5.88 6.25 13.33 0.00 0.00 10.53 0.00 50.00 15.79 13.33 5.26 8.00 11.11 10.00 0.00 9.09 0.00 12.50 0.00 4.55 11.11 5.88 11.76 7.69 13.33 27.27 5.00 0.00 7.14 0.00 K intron_retention CG15098,I_chr2R_14721290_14721355 chr2R - chr2R_14721290_14721469 chr2R_14721289_14721290;chr2R_14721469_14721470 chr2R_14721190_14721289;chr2R_14721470_14721623 0.83 0.75 0.91 0.81 0.53 0.75 1.66 0.93 0.89 1.21 0.98 0.50 0.65 0.77 1.13 1.16 0.92 0.79 0.51 0.60 1.09 0.86 0.83 0.91 1.08 0.95 1.62 2.13 2.13 0.57 1.02 0.72 0.75 0.70 0.95 1.35 0.94 0.35 0.74 1.11 1.07 0.53 0.72 1.02 0.92 0.81 0.61 1.37 0.90 0.80 0.99 0.17 0.40 0.74 0.75 0.52 0.42 0.50 K cassette gish,I_chr3R_12125412_12126290 chr3R + chr3R_12124273_12126966 chr3R_12124273_12125312;chr3R_12125412_12126966 chr3R_12125313_12125411 chr3R_12124192_12124272;chr3R_12126967_12127073 12.33 12.22 22.35 9.52 13.73 9.09 14.29 10.53 15.82 8.33 6.00 17.37 0.00 14.29 12.20 10.57 9.23 12.90 12.33 50.00 11.32 10.26 12.03 16.08 6.80 11.94 9.35 8.42 17.90 17.89 9.09 9.84 16.13 12.70 11.61 32.74 16.16 18.37 14.29 12.62 7.88 13.48 14.06 10.74 14.69 8.73 11.36 8.97 12.93 10.46 9.74 10.43 23.26 14.95 13.46 12.41 16.81 14.36 K intron_retention I_chr3L_12398261_12403200,Gap69C chr3L - chr3L_12409580_12409639 chr3L_12409579_12409580;chr3L_12409639_12409640 chr3L_12409375_12409579;chr3L_12409640_12410187 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 9.30 3.77 0.00 0.00 0.00 4.44 0.00 4.17 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.00 0.00 1.16 0.00 0.00 1.27 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Sox102F chr4 - chr4_823954_848484 chr4_823954_844126;chr4_844245_848484 chr4_844127_844244 chr4_823024_823953;chr4_848485_848493 88.89 NA NA 83.33 100.00 100.00 NA 84.62 100.00 NA NA 88.89 NA 80.00 87.50 92.86 NA NA 88.89 90.00 NA NA NA NA NA NA NA NA NA NA 87.50 NA NA 94.12 NA NA NA NA NA 66.67 NA 90.91 NA 83.33 NA 100.00 NA NA 80.00 NA NA NA NA NA 75.00 NA NA 88.89 K alternative_donor CG42258,I_chrX_12359522_12362282 chrX + chrX_12365942_12369672 chrX_12365968_12369672 chrX_12369673_12369873;chrX_12365863_12365941 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention crq,I_chr2L_452737_452797 chr2L - chr2L_452737_452797 chr2L_452736_452737;chr2L_452797_452798 chr2L_452637_452736;chr2L_452798_452897 97.96 98.04 95.12 98.98 100.00 97.67 98.15 98.11 97.08 100.00 96.97 98.99 98.15 96.43 96.67 98.10 95.65 97.83 98.48 95.95 100.00 97.22 98.25 100.00 96.43 98.18 98.28 96.97 100.00 96.55 96.88 100.00 100.00 96.43 97.30 96.77 100.00 100.00 100.00 93.75 100.00 95.92 98.08 100.00 88.89 94.87 97.50 100.00 94.17 96.88 97.96 100.00 92.86 96.00 98.44 90.91 95.12 100.00 K mutually_exclusive CG3114,RI_chrX_168562_168685 chrX - chrX_165647_166454,chrX_166917_167215 chrX_165647_165834,chrX_165909_167215 chrX_166455_166916 chrX_165835_165908 chrX_165521_165646;chrX_167216_167420 29.29 0.00 40.00 NA NA 25.00 NA NA 33.33 50.00 NA 33.33 NA NA 0.00 16.67 NA NA NA 11.11 NA 25.00 30.00 NA NA NA 50.00 NA 33.33 0.00 50.00 NA 25.00 0.00 NA NA 16.67 66.67 28.57 NA NA 25.00 NA NA NA NA NA NA 25.00 NA 40.00 NA 40.00 NA NA 50.00 NA 40.00 K alternative_donor Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11838972_11839376;chr2R_11838972_11839411 chr2R_11838972_11839458 chr2R_11838888_11838971;chr2R_11839459_11839486 0.00 0.00 11.11 0.00 0.00 0.00 11.11 9.09 6.25 14.29 0.00 11.11 14.29 0.00 0.00 0.00 0.00 0.00 14.29 5.88 0.00 5.26 5.26 0.00 16.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 16.67 0.00 0.00 0.00 0.00 0.00 NA 0.00 7.69 0.00 NA 0.00 K intron_retention Atpalpha,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16792622_16798894 chr3R_16792621_16792622;chr3R_16798894_16798895 chr3R_16792527_16792621;chr3R_16798895_16798994 100.00 88.89 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 K intron_retention CG6597 chr3L + chr3L_20301717_20301846 chr3L_20301716_20301717;chr3L_20301846_20301847 chr3L_20301509_20301716;chr3L_20301847_20302257 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG8116,I_chr3R_4542126_4542214,RI_chr3R_4542291_4542625,RI_chr3R_4542291_4542652,I_chr3R_4542561_4542617,I_chr3R_4545118_4545525 chr3R + chr3R_4542291_4542617;chr3R_4542291_4542622 chr3R_4542291_4542625 chr3R_4542215_4542290;chr3R_4542626_4542717 0.00 NA 0.00 10.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 11.11 0.00 5.88 0.00 0.00 0.00 0.00 NA NA 14.29 5.26 4.55 8.33 0.00 7.14 0.00 0.00 16.67 12.50 0.00 NA 12.50 8.00 0.00 7.14 NA 0.00 0.00 0.00 20.00 3.57 0.00 0.00 11.11 NA 0.00 NA 0.00 NA NA 15.00 K intron_retention wapl,Cyp4d1 chrX - chrX_2046793_2047146 chrX_2046792_2046793;chrX_2047146_2047147 chrX_2045950_2046792;chrX_2047147_2049759 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG13085,REI_chr2L_19426699_19427208,I_chr2L_19426780_19427208,CG16771,I_chr2L_19426895_19427208,I_chr2L_19427121_19427208 chr2L + chr2L_19426895_19427208 chr2L_19426894_19426895;chr2L_19427208_19427209 chr2L_19426795_19426894;chr2L_19427209_19427308 41.67 60.00 33.33 67.74 41.67 53.85 52.63 53.12 41.94 NA 25.00 45.16 54.55 46.67 25.00 43.75 33.33 50.00 47.06 34.29 23.53 NA 39.13 42.11 50.00 26.67 37.50 NA NA NA 38.46 NA NA 40.00 NA 35.29 NA NA NA NA NA 29.03 50.00 NA NA 35.71 31.25 NA 45.45 NA 27.78 41.67 50.00 NA 40.00 50.00 37.50 NA K intron_retention CG14235,noncoding_24847,CG18809,noncoding_24848 chrX - chrX_19635202_19637988 chrX_19635201_19635202;chrX_19637988_19637989 chrX_19634765_19635201;chrX_19637989_19638057 100.00 100.00 NA 100.00 NA NA NA 88.89 100.00 NA NA 100.00 NA NA 100.00 NA NA 100.00 NA 93.33 NA 100.00 NA NA NA NA NA NA 90.00 100.00 NA 91.67 88.24 100.00 NA NA 100.00 NA 100.00 100.00 NA 90.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA NA NA NA 93.33 K alternative_donor chic,RI_chr2L_5976783_5980950,I_chr2L_5979705_5979818,I_chr2L_5979705_5979941,RI_chr2L_5979705_5979951,I_chr2L_5979705_5979953,I_chr2L_5979705_5980025,I_chr2L_5979705_5980213,I_chr2L_5979705_5980370,I_chr2L_5979705_5980558,I_chr2L_5979705_5980632,I_chr2L_5979705_5980639,RI_chr2L_5979705_5980734 chr2L - chr2L_5979705_5980208;chr2L_5979705_5979939 chr2L_5979705_5979959 chr2L_5979605_5979704;chr2L_5980209_5980475 0.90 1.18 0.90 0.63 1.45 1.01 0.79 0.83 1.01 1.05 0.35 0.93 0.65 0.67 1.78 1.20 1.01 0.97 1.12 1.01 1.22 0.87 0.73 1.06 0.00 0.53 0.62 0.88 2.02 0.39 0.95 0.35 0.98 0.84 0.78 1.37 0.97 0.71 1.48 0.43 0.91 1.01 1.20 1.08 0.78 0.62 0.80 0.70 0.81 0.75 0.61 1.10 0.91 0.85 1.13 1.18 0.75 0.75 K alternative_donor CG32016,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_975490_975549 chr4_975490_975546 chr4_975436_975489;chr4_975550_975646 89.33 86.67 94.12 80.00 83.33 78.57 93.10 83.72 84.62 NA 91.67 89.19 82.61 89.47 89.47 76.19 77.78 100.00 92.31 87.10 90.91 NA 93.75 90.91 100.00 93.75 78.95 NA 100.00 NA 72.00 90.91 100.00 82.05 81.25 90.00 NA 90.00 81.82 95.24 NA 79.41 81.82 93.33 NA 83.33 88.89 91.67 79.17 91.67 94.12 78.57 88.89 87.50 92.00 90.91 76.47 90.00 K intron_retention frtz chr2L - chr2L_1714474_1715138 chr2L_1714473_1714474;chr2L_1715138_1715139 chr2L_1714173_1714473;chr2L_1715139_1715811 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 6.45 NA NA NA 0.00 NA NA NA 0.00 NA 18.18 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 6.67 13.33 NA 0.00 6.67 0.00 0.00 4.35 NA 0.00 NA 9.09 0.00 NA NA 6.67 0.00 0.00 0.00 0.00 NA NA 0.00 13.33 0.00 NA K intron_retention Hydr2,RI_chr2L_3164075_3164159 chr2L + chr2L_3167974_3168034 chr2L_3167973_3167974;chr2L_3168034_3168035 chr2L_3167624_3167973;chr2L_3168035_3168699 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 1.09 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.27 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 K intron_retention CG30372,coilin,I_chr2R_4012973_4013037,RI_chr2R_4012976_4013037 chr2R - chr2R_4012979_4013037 chr2R_4012978_4012979;chr2R_4013037_4013038 chr2R_4012772_4012978;chr2R_4013038_4013137 0.00 0.00 6.67 11.11 NA NA 0.00 0.00 2.63 NA NA 16.67 NA NA NA 0.00 NA NA 0.00 7.41 NA NA 5.88 0.00 7.14 NA 0.00 NA 41.67 0.00 0.00 NA 5.56 0.00 NA NA 6.67 NA NA 0.00 NA 15.15 NA 0.00 6.67 0.00 0.00 NA 3.45 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 K jcn_only_AD Asph,I_chr2R_12002559_12002858,I_chr2R_12003256_12003315,I_chr2R_12003264_12003322,I_chr2R_12003264_12003325,RI_chr2R_12003268_12003322,RI_chr2R_12003268_12003325 chr2R + chr2R_12003264_12003315 chr2R_12003268_12003315 chr2R_12003316_12003415;chr2R_12003181_12003263 28.00 NA NA NA NA NA NA NA 28.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention csw,I_chrX_2002576_2003165 chrX + chrX_2005657_2005720 chrX_2005656_2005657;chrX_2005720_2005721 chrX_2005238_2005656;chrX_2005721_2005899 100.00 100.00 NA 100.00 NA NA NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 NA NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 K intron_retention Eb1,I_chr2R_2640494_2642206,I_chr2R_2642491_2642549 chr2R + chr2R_2636895_2640136 chr2R_2636894_2636895;chr2R_2640136_2640137 chr2R_2636790_2636894;chr2R_2640137_2640289 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.74 0.29 0.51 0.00 0.00 0.00 0.58 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.84 0.00 0.00 0.10 0.00 0.45 0.00 1.09 0.00 0.00 0.69 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CaMKII,I_chr4_1069766_1069812,I_chr4_1071236_1071307,RI_chr4_1071236_1071315,I_chr4_1071489_1071884,RI_chr4_1071489_1071968,I_chr4_1071569_1071884,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1071236_1071968;chr4_1071236_1071884;chr4_1071236_1072054;chr4_1071236_1071319 chr4_1071236_1071813 chr4_1071136_1071235;chr4_1072055_1072059 1.73 NA 0.00 4.49 NA NA 2.00 3.30 0.00 NA NA 2.94 0.00 0.00 0.00 1.71 4.35 NA 1.89 0.00 3.57 0.00 8.70 NA NA NA NA NA 0.00 0.00 3.28 3.85 0.00 1.22 NA 0.00 NA NA NA 0.00 0.00 3.33 2.56 0.00 4.00 2.04 NA 1.75 6.10 NA NA NA NA NA 2.86 NA NA 0.99 K alternative_acceptor CG16710,CG18754 chr3R + chr3R_19509105_19509242 chr3R_19509105_19509176 chr3R_19508492_19509104;chr3R_19509243_19509606 98.51 97.92 96.00 100.00 100.00 100.00 98.25 98.48 100.00 100.00 100.00 100.00 100.00 97.50 97.44 97.96 100.00 100.00 100.00 96.67 97.96 100.00 100.00 97.22 100.00 97.44 94.74 92.31 90.00 96.88 100.00 100.00 100.00 97.14 96.15 90.91 97.50 100.00 100.00 94.74 100.00 98.68 100.00 96.67 93.33 100.00 96.97 92.31 98.51 94.74 97.78 100.00 100.00 95.83 100.00 96.43 100.00 100.00 K intron_retention Mipp2 chrX - chrX_5984876_5985149 chrX_5984875_5984876;chrX_5985149_5985150 chrX_5984442_5984875;chrX_5985150_5985581 4.35 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.70 K intron_retention ppk28 chrX + chrX_16700534_16700666 chrX_16700533_16700534;chrX_16700666_16700667 chrX_16700340_16700533;chrX_16700667_16701333 35.89 NA NA NA NA NA NA NA 38.46 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA 54.55 NA NA NA 42.86 NA NA NA NA NA NA NA NA 40.00 NA 25.00 NA NA NA NA NA NA 18.75 NA 25.00 NA NA NA NA NA NA NA K jcn_only_AA R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8088454_8089184;chr2L_8088454_8088609;chr2L_8088454_8089057;chr2L_8088454_8089490;chr2L_8088454_8088664 chr2L_8088454_8089356 chr2L_8088448_8088453 10.16 NA 15.22 21.62 NA NA 22.64 16.07 18.75 NA NA 18.18 19.05 13.89 0.00 5.41 NA 10.00 6.82 7.22 8.70 NA 3.33 15.00 9.52 11.11 NA NA NA NA 5.56 NA 4.35 15.79 2.94 4.44 NA NA NA 11.63 0.00 5.17 9.68 6.67 NA 13.79 NA NA 10.31 NA 11.11 NA 13.04 NA 3.70 12.50 NA NA K intron_retention CG15609,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12896448_12897557 chr2R_12896447_12896448;chr2R_12897557_12897558 chr2R_12896351_12896447;chr2R_12897558_12897678 8.70 9.41 8.82 9.46 7.27 3.64 10.11 10.64 11.27 10.34 8.47 4.41 12.07 11.54 5.13 10.81 12.90 9.23 4.48 6.49 4.84 14.74 6.67 6.92 11.43 4.17 10.98 5.71 7.50 7.95 5.33 6.49 8.43 5.45 7.81 13.89 7.04 9.57 13.33 10.81 10.17 8.15 10.87 10.34 8.24 6.90 8.33 10.00 12.03 5.33 10.09 8.70 10.53 6.02 11.27 10.71 8.43 7.14 K mutually_exclusive Mtl,I_chr3R_23462559_23463794 chr3R + chr3R_23462298_23463559,chr3R_23463726_23463794 chr3R_23462298_23462381,chr3R_23462559_23463794 chr3R_23463560_23463725 chr3R_23462382_23462558 chr3R_23462291_23462297;chr3R_23463795_23463894 20.00 0.00 NA 50.00 25.00 20.00 33.33 NA 0.00 NA NA 12.50 NA 0.00 12.50 20.00 NA NA 0.00 0.00 0.00 75.00 NA NA NA 33.33 NA NA NA NA 22.22 NA 0.00 0.00 20.00 20.00 25.00 20.00 33.33 33.33 NA 22.22 NA NA 33.33 NA 40.00 NA 28.57 22.22 NA 20.00 NA NA NA NA NA NA K intron_retention RpS15Aa chrX - chrX_13231573_13231643 chrX_13231572_13231573;chrX_13231643_13231644 chrX_13231538_13231572;chrX_13231644_13231706 78.57 78.57 76.47 73.53 69.23 44.00 95.56 63.33 78.85 81.82 54.55 67.86 75.00 66.67 66.67 79.41 82.35 68.75 75.00 80.77 76.92 NA 92.86 82.35 94.74 86.27 98.36 97.22 100.00 NA 57.14 NA NA 54.55 81.82 NA 80.95 88.89 93.75 NA 75.00 58.82 61.11 NA NA 91.67 70.00 NA 62.86 86.67 87.50 85.71 90.00 NA 60.87 84.62 65.85 43.75 K alternative_donor Trx-2,I_chr2L_9613459_9615301,I_chr2L_9613592_9615301,E_chr2L_9615344_9615833,I_chr2L_9615252_9615301 chr2L + chr2L_9613376_9615301;chr2L_9615252_9615301 chr2L_9613541_9615301 chr2L_9615302_9615343;chr2L_9613359_9613375 98.20 99.41 97.80 97.71 97.26 98.58 96.97 97.41 97.38 98.70 98.45 98.15 97.06 97.63 98.12 98.14 98.20 97.16 97.52 98.07 98.65 97.09 99.10 98.89 98.75 97.78 98.88 96.68 98.32 98.95 97.93 98.03 96.95 97.72 98.08 98.73 99.50 99.57 99.27 98.97 98.38 97.86 97.58 99.52 98.06 98.70 99.16 98.13 97.95 99.02 98.63 98.67 99.32 99.39 98.40 99.49 99.36 97.51 K intron_retention hts,I_chr2R_15286599_15294119,I_chr2R_15311185_15312327,I_chr2R_15311303_15312026 chr2R - chr2R_15286305_15286530 chr2R_15286304_15286305;chr2R_15286530_15286531 chr2R_15286061_15286304;chr2R_15286531_15286598 5.71 11.54 6.25 9.09 8.00 0.00 0.00 4.88 6.41 NA 0.00 4.94 15.15 7.69 9.52 15.38 6.67 9.09 0.00 8.11 10.00 9.09 6.06 12.12 14.29 4.44 0.00 0.00 25.00 0.00 5.71 0.00 0.00 9.26 12.50 0.00 2.94 0.00 6.06 4.17 NA 7.50 0.00 0.00 5.56 0.00 10.34 0.00 5.88 0.00 7.69 0.00 7.69 11.76 2.50 0.00 0.00 0.00 K intron_retention CG42307 chr3L + chr3L_7322464_7322528 chr3L_7322463_7322464;chr3L_7322528_7322529 chr3L_7322251_7322463;chr3L_7322529_7322737 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 3.28 0.00 1.40 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.67 1.36 0.00 0.00 0.93 0.00 0.00 0.00 1.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention shn chr2R + chr2R_7101705_7101767 chr2R_7101704_7101705;chr2R_7101767_7101768 chr2R_7101478_7101704;chr2R_7101768_7104849 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG30193,CG30190 chr2R + chr2R_18815153_18816610 chr2R_18815152_18815153;chr2R_18816610_18816611 chr2R_18815039_18815152;chr2R_18816611_18816814 5.17 4.11 5.88 6.06 3.64 9.09 9.86 6.25 5.44 4.44 3.77 8.55 4.08 4.35 6.35 6.38 3.12 5.17 3.03 7.74 3.75 7.45 3.85 5.05 4.11 7.27 3.28 12.77 14.93 4.55 4.05 7.89 5.26 3.12 0.00 12.82 3.92 3.45 5.43 9.68 13.33 4.73 4.44 5.00 14.29 7.25 2.90 6.38 2.54 4.94 5.49 0.00 6.00 3.57 5.81 5.06 6.15 8.33 N cassette Cg25C chr2L + chr2L_5030238_5030854 chr2L_5030238_5030741;chr2L_5030791_5030854 chr2L_5030742_5030790 chr2L_5030137_5030237;chr2L_5030855_5031802 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG7639 chr2R - chr2R_10875589_10875647 chr2R_10875588_10875589;chr2R_10875647_10875648 chr2R_10875063_10875588;chr2R_10875648_10876206 0.00 9.09 NA NA NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 10.00 0.00 NA NA NA 8.89 0.00 NA 0.00 0.00 NA NA 3.45 4.55 5.56 0.00 NA 0.00 10.53 6.67 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention Ca-P60A,I_chr2R_19817636_19817680,I_chr2R_19820338_19823289 chr2R - chr2R_19817141_19817204 chr2R_19817140_19817141;chr2R_19817204_19817205 chr2R_19817023_19817140;chr2R_19817205_19817441 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10065344,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10064983_10065389 chr2R_10064983_10065365 chr2R_10064680_10064982;chr2R_10065390_10065444 97.47 97.67 100.00 94.12 95.24 NA NA 100.00 93.24 100.00 NA 97.73 96.97 100.00 96.77 95.65 100.00 100.00 100.00 97.67 100.00 89.66 97.67 96.83 86.84 100.00 98.18 88.89 97.50 100.00 92.59 96.77 85.71 100.00 97.56 100.00 96.84 100.00 98.86 98.70 91.67 94.67 96.67 96.72 84.38 100.00 91.11 97.44 95.08 100.00 98.25 97.67 93.94 100.00 95.24 93.10 96.67 95.12 K jcn_only_AD ZnT63C chr3L + chr3L_3303853_3304601;chr3L_3303837_3304601 chr3L_3304022_3304601 chr3L_3304602_3304665;chr3L_3303742_3303836 0.83 0.83 1.53 0.75 0.00 0.83 0.68 1.73 1.63 0.84 0.00 5.46 0.00 0.00 2.54 0.00 0.00 1.72 0.85 1.55 2.06 0.00 0.00 1.01 0.88 2.11 1.36 0.96 0.83 5.15 0.00 3.08 9.43 1.04 0.00 2.04 0.53 0.76 0.85 0.00 4.04 0.00 0.00 0.52 0.00 0.00 0.65 0.00 1.49 0.74 0.00 0.00 2.17 0.00 1.85 0.00 0.00 2.50 K jcn_only_AD CG13923,CG12022 chr3L + chr3L_1803568_1803794 chr3L_1803734_1803794 chr3L_1803795_1804355;chr3L_1803433_1803567 7.37 10.53 3.70 2.22 0.00 20.83 16.67 4.44 13.95 NA NA 6.25 10.00 NA 3.23 8.70 4.17 NA NA 13.21 NA NA 3.08 16.22 7.41 0.00 NA NA 9.68 9.52 32.00 NA 3.70 0.00 4.00 4.55 4.44 3.57 5.71 10.81 10.00 8.16 NA 10.00 10.34 9.30 10.81 10.00 9.09 7.32 11.54 4.55 4.65 2.78 7.41 2.63 2.86 4.35 K intron_retention CG3164,I_chr2L_125267_126140,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_125267_126109 chr2L_125266_125267;chr2L_126109_126110 chr2L_125167_125266;chr2L_126110_126227 1.26 0.00 1.57 0.82 1.45 0.00 0.26 1.34 0.40 1.05 1.38 0.77 1.44 0.85 0.72 1.49 1.66 1.57 1.67 1.23 0.00 1.35 0.90 0.73 2.39 0.44 1.81 2.14 2.79 1.26 0.84 0.00 1.32 0.56 1.83 2.30 0.95 0.42 1.36 1.94 1.52 1.10 0.00 0.96 2.33 3.50 1.95 0.71 0.50 0.97 1.78 1.12 3.74 2.17 1.62 0.00 2.27 1.11 K intron_retention CG1572 chrX - chrX_11449829_11449958 chrX_11449828_11449829;chrX_11449958_11449959 chrX_11449318_11449828;chrX_11449959_11450144 0.65 0.66 0.47 0.99 0.55 0.64 0.79 0.86 0.64 0.78 0.67 0.45 0.64 0.65 0.75 0.78 0.61 0.46 0.40 0.56 0.36 0.58 0.56 0.65 0.70 0.75 0.77 0.93 0.71 0.39 0.57 0.00 0.36 0.78 0.99 1.24 0.46 0.69 0.47 1.03 1.19 0.62 0.68 0.57 0.21 0.43 0.62 0.30 0.77 0.68 1.17 0.30 0.23 0.75 0.66 0.77 0.62 1.03 K intron_retention Su(dx),RE_chr2L_2038009_2039919,CG31672 chr2L + chr2L_2040360_2040421 chr2L_2040359_2040360;chr2L_2040421_2040422 chr2L_2040217_2040359;chr2L_2040422_2041573 0.00 0.00 0.00 4.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RpS3A,I_chr4_87364_87465,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87549_87769 chr4_87549_87717 chr4_87466_87548;chr4_87770_87817 99.98 99.89 99.96 100.00 99.87 100.00 100.00 99.97 100.00 100.00 100.00 99.95 100.00 99.95 100.00 99.97 99.90 100.00 99.95 99.98 99.94 100.00 100.00 100.00 100.00 99.95 99.83 100.00 99.90 99.89 99.84 100.00 99.94 99.97 100.00 100.00 99.77 100.00 99.90 99.91 99.93 100.00 100.00 100.00 100.00 100.00 100.00 99.90 99.95 100.00 99.83 100.00 99.90 99.58 99.96 100.00 100.00 99.97 K jcn_only_AD Sin3A,RI_chr2R_8473578_8475687,RI_chr2R_8473578_8476220,I_chr2R_8473578_8480185,RI_chr2R_8479951_8480233 chr2R - chr2R_8473578_8480233 chr2R_8473578_8479833 chr2R_8473478_8473577;chr2R_8480234_8480285 90.35 86.96 88.89 91.89 NA 78.26 92.86 85.71 84.81 83.33 100.00 93.88 80.65 95.83 NA 87.80 NA 85.71 84.85 90.70 NA NA 95.45 81.48 NA NA 77.42 100.00 91.30 95.83 80.00 NA NA 86.79 95.00 NA 94.87 85.71 80.00 93.10 NA 89.36 96.55 92.59 NA NA NA 97.30 84.09 NA 90.00 100.00 NA NA 96.77 NA NA 95.65 K intron_retention Vps16A chr3R + chr3R_5094407_5094458 chr3R_5094406_5094407;chr3R_5094458_5094459 chr3R_5094279_5094406;chr3R_5094459_5094607 0.00 0.00 0.00 0.00 1.47 0.00 1.61 0.00 1.18 0.00 0.00 2.38 3.28 0.00 3.75 4.41 0.00 0.00 0.00 0.67 0.00 0.00 3.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 2.30 0.00 1.72 0.00 0.91 0.00 0.00 0.00 K cassette CG1607 chr3R + chr3R_27210222_27212797 chr3R_27210222_27210889;chr3R_27211341_27212797 chr3R_27210890_27211340 chr3R_27210165_27210221;chr3R_27212798_27213120 5.00 9.09 5.00 0.00 6.67 5.88 13.04 6.25 1.89 5.56 4.76 7.69 14.29 6.67 3.85 4.23 NA 11.54 7.69 8.89 3.45 1.75 3.70 4.76 NA 4.76 5.00 0.00 4.76 2.70 7.89 5.88 0.00 5.71 2.63 0.00 0.00 NA 10.00 8.57 0.00 4.65 10.00 2.00 0.00 5.00 6.25 2.04 6.67 NA 6.90 5.56 0.00 0.00 10.00 6.67 4.76 0.00 K intron_retention CG8207 chr2R - chr2R_11565259_11565316 chr2R_11565258_11565259;chr2R_11565316_11565317 chr2R_11565190_11565258;chr2R_11565317_11565385 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.67 0.00 0.00 8.33 0.00 1.59 0.00 5.66 2.27 0.00 0.00 6.25 0.00 0.00 5.26 0.00 0.00 0.00 0.00 7.55 0.00 0.00 0.00 1.41 1.16 0.00 0.00 0.00 1.41 0.00 2.33 0.00 0.00 0.00 2.22 0.00 0.00 K intron_retention CG16863,sec71 chr2L + chr2L_13792257_13792358 chr2L_13792256_13792257;chr2L_13792358_13792359 chr2L_13791665_13792256;chr2L_13792359_13793226 100.00 90.00 NA 100.00 NA NA 100.00 90.91 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 90.00 100.00 100.00 NA NA 100.00 NA 100.00 NA 94.44 NA NA 100.00 NA NA NA NA 100.00 92.31 NA 100.00 NA NA 90.00 NA 90.91 NA 90.00 87.50 100.00 NA NA NA NA NA 90.00 90.91 K intron_retention mRpL33,I_chrX_4216068_4216134 chrX - chrX_4215901_4215963 chrX_4215900_4215901;chrX_4215963_4215964 chrX_4215782_4215900;chrX_4215964_4216067 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 3.03 0.00 2.44 0.00 1.72 2.60 0.00 0.00 0.00 2.90 0.00 0.00 NA 0.00 0.00 3.77 6.06 2.30 0.00 18.92 0.00 0.00 0.00 0.00 0.00 2.17 2.94 0.00 0.00 0.00 0.00 10.81 2.73 0.00 0.00 0.00 0.00 1.00 0.00 2.47 0.00 2.94 0.00 0.00 0.00 1.39 0.00 4.11 3.23 K jcn_only_AA east,CR_chrX_1912038_1912737 chrX + chrX_1912972_1913090 chrX_1912972_1913072 chrX_1912738_1912971;chrX_1913091_1913539 2.75 2.13 3.85 8.96 2.08 5.41 0.00 1.35 2.80 2.70 0.00 2.27 0.00 2.63 3.08 5.26 0.00 2.27 3.92 1.27 3.23 7.55 4.92 4.55 5.13 2.44 2.70 22.73 9.52 2.63 3.51 NA 2.63 3.61 5.00 8.51 0.00 2.08 1.67 1.12 10.00 3.06 5.66 1.61 3.70 5.88 0.00 2.33 4.67 4.55 1.39 2.50 0.00 3.03 4.69 0.00 0.00 4.35 K intron_retention Ddip2,I_chr3L_252776_253313 chr3L - chr3L_256594_256648 chr3L_256593_256594;chr3L_256648_256649 chr3L_256214_256593;chr3L_256649_256793 0.00 4.17 8.57 6.52 0.00 0.00 0.00 4.08 6.90 0.00 0.00 4.65 8.57 0.00 0.00 7.27 0.00 0.00 0.00 5.33 0.00 0.00 0.00 0.00 0.00 0.00 3.33 5.88 13.04 0.00 7.32 NA 0.00 8.89 0.00 0.00 0.00 0.00 2.86 6.25 0.00 3.03 0.00 0.00 NA 6.25 0.00 9.68 5.77 NA 0.00 NA NA NA 5.71 NA NA NA K jcn_only_AD cnn,I_chr2R_9333096_9336723,I_chr2R_9333096_9336812,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9334834_9336723;chr2R_9334834_9336812;chr2R_9334834_9336501 chr2R_9334834_9336719 chr2R_9334744_9334833;chr2R_9336813_9336819 9.71 NA NA 16.13 NA NA 7.69 8.11 7.41 NA NA 17.24 4.35 NA NA 5.71 NA NA NA 15.38 NA 10.53 3.33 NA NA NA 10.34 11.54 NA 10.71 NA NA 10.34 NA NA 22.22 3.85 NA NA 11.54 NA 15.00 NA 6.67 NA 13.04 NA 8.00 9.09 4.76 0.00 NA NA NA NA NA NA NA K jcn_only_AD Rcd1 chr2R - chr2R_10039432_10040098 chr2R_10039432_10039568 chr2R_10039112_10039431;chr2R_10040099_10040144 100.00 90.48 NA 93.18 100.00 NA 100.00 95.00 97.30 NA NA 100.00 NA NA 96.00 NA 100.00 100.00 NA 97.96 NA 94.44 100.00 100.00 95.65 100.00 100.00 100.00 100.00 NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 97.22 100.00 96.00 100.00 NA 95.45 100.00 96.55 NA 93.55 NA 100.00 NA 100.00 NA NA 100.00 K intron_retention CG1764 chrX - chrX_13189416_13189559 chrX_13189415_13189416;chrX_13189559_13189560 chrX_13189191_13189415;chrX_13189560_13189657 0.00 0.66 0.00 4.35 0.00 0.00 0.00 2.70 2.34 0.00 0.00 2.56 1.72 0.00 0.00 0.00 0.00 0.00 5.56 1.12 1.45 1.10 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.43 1.52 0.00 2.07 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.79 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG31998,I_chr4_225419_226294 chr4 - chr4_225419_226474;chr4_225419_226284 chr4_225419_226366 chr4_225319_225418;chr4_226475_226518 88.89 88.89 88.89 89.19 83.33 100.00 89.19 84.85 89.13 NA 87.50 80.77 70.59 100.00 75.00 88.24 85.71 100.00 69.23 87.50 88.89 80.00 90.91 NA 71.43 100.00 66.67 60.00 NA NA 100.00 NA 100.00 88.89 100.00 100.00 83.33 NA NA 100.00 NA 89.47 90.00 83.33 NA NA NA 83.33 84.62 NA 100.00 85.71 NA NA 90.00 NA NA NA K intron_retention Psn,RI_chr3L_20430213_20430358 chr3L + chr3L_20427403_20427647 chr3L_20427402_20427403;chr3L_20427647_20427648 chr3L_20427187_20427402;chr3L_20427648_20427812 5.30 5.81 4.76 8.78 6.48 4.50 6.80 5.30 5.22 3.39 4.35 3.83 10.67 7.53 4.63 7.48 4.11 5.38 4.76 4.91 7.37 3.01 7.07 7.30 5.62 6.96 10.06 7.69 16.28 5.71 6.98 5.88 2.17 4.23 4.76 6.73 4.26 5.19 4.05 1.43 3.03 3.83 6.38 3.85 5.00 4.83 6.41 2.86 6.06 6.01 6.63 4.44 10.26 3.29 6.09 6.25 5.20 3.88 K intron_retention CG18766,I_chr3R_23069667_23070256,I_chr3R_23069667_23070318,RI_chr3R_23069667_23070361,I_chr3R_23069667_23070365 chr3R - chr3R_23069667_23070738 chr3R_23069666_23069667;chr3R_23070738_23070739 chr3R_23069567_23069666;chr3R_23070739_23070822 0.00 0.00 0.00 0.00 0.00 6.45 0.00 2.82 1.03 0.00 0.00 0.00 0.00 3.85 7.32 5.41 4.44 0.00 0.00 4.95 0.00 0.00 7.02 0.00 0.00 0.00 4.00 0.00 0.00 0.00 1.72 7.41 0.00 0.00 5.26 0.00 0.00 0.00 5.71 0.00 0.00 2.78 0.00 0.00 0.00 1.37 4.55 0.00 3.49 3.85 3.70 0.00 0.00 0.00 1.92 0.00 0.00 3.28 K intron_retention step,I_chr2L_21743972_21757163,RI_chr2L_21747333_21756553,EI_chr2L_21753427_21753664 chr2L - chr2L_21753427_21753687 chr2L_21753426_21753427;chr2L_21753687_21753688 chr2L_21753370_21753426;chr2L_21753688_21753747 100.00 NA 100.00 100.00 NA NA 100.00 94.74 100.00 NA NA 92.31 100.00 91.67 NA 95.00 100.00 NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 94.44 NA NA NA NA NA 100.00 NA 92.86 NA NA NA NA NA NA 88.89 NA NA 100.00 NA NA 100.00 NA NA NA K intron_retention scaf6,EI_chr3L_17037760_17037808 chr3L - chr3L_17032294_17032356 chr3L_17032293_17032294;chr3L_17032356_17032357 chr3L_17032225_17032293;chr3L_17032357_17032433 0.00 0.00 3.70 0.00 0.00 0.00 5.26 2.38 5.33 NA 0.00 0.00 NA 0.00 0.00 0.00 12.50 0.00 0.00 2.86 NA 5.88 4.65 0.00 0.00 NA 2.94 NA 0.00 0.00 0.00 0.00 2.70 0.00 8.33 0.00 3.85 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 4.17 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG31720,F_chr2L_10234951_10235484 chr2L - chr2L_10236257_10236374;chr2L_10236292_10236374 chr2L_10236287_10236374 chr2L_10236375_10236547;chr2L_10236031_10236256 77.72 NA NA NA NA NA NA NA 95.45 NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_donor CG8229,CG33199 chr2R - chr2R_4836447_4838210;chr2R_4836447_4836515 chr2R_4836447_4837350 chr2R_4835619_4836446;chr2R_4838211_4838296 40.52 37.14 29.15 48.51 30.87 36.41 55.87 41.55 50.12 36.48 51.16 48.64 30.90 46.59 46.15 45.26 31.03 38.89 45.96 49.00 50.91 44.10 40.34 36.82 40.52 41.90 48.06 33.55 60.00 32.12 47.87 32.68 54.02 29.97 39.41 36.36 42.18 36.31 41.30 40.06 57.92 46.17 39.46 41.74 5.26 31.23 39.08 48.36 29.05 44.83 43.94 30.13 43.00 27.27 33.84 33.88 52.92 17.71 K mutually_exclusive cp309,I_chr3L_15074145_15074432 chr3L - chr3L_15066295_15067424,chr3L_15067593_15067783 chr3L_15066295_15066406,chr3L_15066431_15067783 chr3L_15067425_15067592 chr3L_15066407_15066430 chr3L_15066244_15066294;chr3L_15067784_15068947 83.33 71.43 80.00 91.67 NA NA 77.78 90.91 78.57 60.00 83.33 83.33 NA 88.89 85.71 83.33 83.33 NA 100.00 92.31 NA NA 80.00 100.00 NA NA 88.89 NA NA 75.00 83.33 NA 85.71 70.00 87.50 NA 77.78 NA NA 90.00 NA 100.00 NA NA NA NA NA NA 91.67 NA 77.78 NA NA NA 91.67 NA NA NA K intron_retention bbc,I_chr2R_9376554_9377246,REI_chr2R_9379401_9381986 chr2R - chr2R_9375638_9378244 chr2R_9375637_9375638;chr2R_9378244_9378245 chr2R_9375479_9375637;chr2R_9378245_9378376 16.57 13.95 25.16 25.74 17.27 18.18 21.05 30.06 18.52 8.48 21.37 20.52 26.42 21.55 21.05 36.72 17.32 26.96 28.57 23.61 24.39 21.43 20.00 14.74 14.91 21.32 15.75 16.07 13.31 12.33 18.34 14.81 15.87 16.39 14.50 24.20 18.04 12.40 15.06 9.40 5.88 19.40 21.95 7.58 5.44 8.42 13.19 12.81 18.14 16.57 13.55 13.11 10.12 15.82 20.24 14.55 13.24 5.87 K intron_retention MRP,I_chr2L_12727117_12729243,F_chr2L_12727117_12736035 chr2L + chr2L_12727117_12730842 chr2L_12727116_12727117;chr2L_12730842_12730843 chr2L_12727017_12727116;chr2L_12730843_12731066 62.50 NA 60.00 65.00 NA NA 93.75 52.00 63.16 NA NA 42.55 NA NA NA 62.50 NA NA 53.85 29.03 35.71 NA 70.37 57.14 NA NA 50.00 NA NA 66.67 NA NA NA 47.06 NA 71.43 42.86 62.50 63.64 64.29 NA 75.00 87.50 NA NA NA NA NA 76.47 NA 56.00 NA NA NA 72.73 NA NA NA K intron_retention mys,I_chrX_7958795_7961094 chrX + chrX_7958795_7960130 chrX_7958794_7958795;chrX_7960130_7960131 chrX_7958695_7958794;chrX_7960131_7960143 11.54 12.77 15.91 17.02 11.36 22.58 33.33 11.63 16.67 6.67 19.05 25.00 23.81 10.77 8.93 23.40 6.38 9.52 12.05 7.25 18.18 13.04 14.81 8.00 12.50 9.59 11.54 21.05 15.38 11.11 5.38 11.76 9.68 12.24 4.44 15.62 7.27 3.12 7.04 9.43 NA 9.57 11.90 4.88 0.00 6.82 6.45 12.12 19.32 NA 14.93 11.63 NA 0.00 11.25 0.00 4.35 NA K intron_retention Clic chrX - chrX_13707839_13707907 chrX_13707838_13707839;chrX_13707907_13707908 chrX_13707363_13707838;chrX_13707908_13708018 0.73 0.52 0.94 1.31 0.47 0.92 0.67 1.02 0.80 0.60 0.59 1.08 0.80 1.17 1.16 0.77 0.82 0.71 0.84 0.86 0.86 1.46 0.26 0.77 0.59 1.16 2.09 2.62 8.63 0.47 0.76 0.16 0.33 0.54 0.68 0.85 0.53 0.73 0.47 0.65 0.83 0.88 0.85 0.25 0.89 0.95 0.66 0.00 0.81 0.65 0.58 0.37 0.54 0.71 0.71 0.73 0.40 0.49 K jcn_only_AD CG4589,I_chr2R_20402394_20402462,I_chr2R_20402394_20402706 chr2R - chr2R_20402394_20402753;chr2R_20402394_20402785 chr2R_20402394_20402809 chr2R_20402294_20402393;chr2R_20402810_20402813 1.67 NA 2.70 5.00 NA 0.00 1.96 0.00 3.77 NA 0.00 0.00 0.00 0.00 3.03 1.67 4.55 5.00 5.00 3.51 0.00 NA NA NA NA 0.00 NA NA 9.09 NA 0.00 NA 0.00 0.00 NA NA NA NA NA 4.76 NA 1.92 3.23 NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 6.45 NA NA 4.17 K intron_retention CG12304 chr3L + chr3L_15577969_15578022 chr3L_15577968_15577969;chr3L_15578022_15578023 chr3L_15577740_15577968;chr3L_15578023_15578521 1.89 0.97 2.94 3.14 0.00 1.98 0.00 1.23 2.69 0.00 0.00 2.91 1.67 3.61 3.10 1.75 2.70 0.85 1.89 0.81 1.14 0.81 2.61 4.59 0.00 3.37 6.36 13.10 1.98 1.12 0.81 3.77 1.61 0.63 2.70 3.30 1.68 0.00 2.48 1.38 1.68 2.04 2.35 2.30 0.00 3.41 1.92 1.69 2.08 2.04 2.50 0.00 3.23 2.26 1.48 1.71 0.00 0.61 K intron_retention CG2906 chr2R + chr2R_3845221_3845273 chr2R_3845220_3845221;chr2R_3845273_3845274 chr2R_3844411_3845220;chr2R_3845274_3845464 0.00 NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA 0.00 NA 6.25 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA NA 0.00 0.00 K intron_retention Ide,I_chr3L_20366301_20366354,I_chr3L_20367491_20367545,I_chr3L_20368443_20368519 chr3L - chr3L_20367373_20367461 chr3L_20367372_20367373;chr3L_20367461_20367462 chr3L_20367287_20367372;chr3L_20367462_20367490 0.00 5.26 0.00 0.00 0.00 0.00 3.28 3.39 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 12.50 3.92 0.00 8.82 0.00 4.82 0.00 8.33 0.00 2.94 0.00 0.00 0.00 2.56 6.67 0.00 2.44 0.00 1.49 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 K intron_retention CG32250,RI_chr3L_4319452_4320137 chr3L + chr3L_4319123_4319198 chr3L_4319122_4319123;chr3L_4319198_4319199 chr3L_4318915_4319122;chr3L_4319199_4319259 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 6.25 NA NA NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 8.33 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 K jcn_only_AD CG6597 chr3L + chr3L_20295603_20296166;chr3L_20295972_20296166 chr3L_20295938_20296166 chr3L_20296167_20296215;chr3L_20295573_20295602 5.06 NA NA 5.13 5.00 NA 5.26 7.14 5.26 NA NA 6.25 5.00 NA 3.23 3.03 0.00 NA 0.00 4.44 9.52 8.33 15.00 0.00 NA 5.00 NA NA NA NA 11.11 NA 4.76 11.11 NA NA 15.15 NA NA 8.33 NA 3.03 0.00 10.00 12.00 NA NA 4.76 10.42 NA NA NA NA NA 4.35 NA NA 2.44 K alternative_donor Sep4,I_chrX_16588453_16588650,I_chrX_16588453_16588983 chrX - chrX_16588405_16589150;chrX_16588405_16588983 chrX_16588405_16588650 chrX_16588353_16588404;chrX_16589151_16589177 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Dredd,RI_chrX_529342_529426 chrX - chrX_528521_528596 chrX_528521_528578 chrX_528452_528520;chrX_528597_528617 95.45 NA NA NA NA NA 95.24 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 K intron_retention Sp212 chr3R - chr3R_10049531_10049603 chr3R_10049530_10049531;chr3R_10049603_10049604 chr3R_10049365_10049530;chr3R_10049604_10049747 0.00 0.00 0.00 0.00 0.00 0.00 13.79 2.13 2.44 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 4.35 5.71 0.00 0.00 0.00 0.00 6.25 NA 2.50 0.00 7.69 0.00 5.19 6.00 4.26 14.29 4.44 0.00 2.38 0.00 4.35 1.39 0.00 2.13 2.90 0.00 0.00 4.84 1.37 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 1.96 K intron_retention HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13170581_13176198 chrX_13170580_13170581;chrX_13176198_13176199 chrX_13170481_13170580;chrX_13176199_13176262 0.00 0.00 0.00 0.00 3.57 1.22 0.00 0.00 1.73 0.00 3.08 0.73 0.00 0.00 0.00 1.09 0.00 1.92 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 1.57 4.17 0.00 0.00 0.00 0.00 1.03 2.78 0.00 0.00 0.00 0.00 1.05 0.00 1.96 1.12 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 2.63 0.00 K intron_retention Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045275_16046111 chr3L_16045274_16045275;chr3L_16046111_16046112 chr3L_16045255_16045274;chr3L_16046112_16046204 85.48 90.00 66.67 73.68 NA NA 82.61 92.86 77.78 NA 87.50 76.47 93.33 90.91 71.43 88.89 81.82 69.23 94.12 72.73 NA 96.30 92.31 90.00 NA 72.22 91.67 87.50 90.00 90.91 76.92 NA 90.00 77.78 77.78 86.96 60.00 NA NA 93.33 NA 84.00 75.00 73.33 NA NA NA 75.00 92.31 NA 83.33 NA NA NA 87.50 NA NA NA K alternative_donor CG10737 chr2R + chr2R_15062754_15063692;chr2R_15062814_15063692 chr2R_15062592_15063692 chr2R_15063693_15063852;chr2R_15062387_15062591 0.88 1.53 2.40 2.48 4.00 0.91 0.74 2.29 0.81 1.54 1.94 0.00 0.00 1.01 0.00 0.00 3.85 1.69 0.88 0.37 1.12 1.29 0.56 0.67 0.00 0.00 1.63 14.61 2.83 0.79 0.68 0.81 0.00 0.56 0.99 0.85 0.67 1.64 3.12 2.71 1.53 0.80 1.11 0.00 0.64 1.75 1.90 0.50 0.42 0.97 1.13 1.15 0.82 0.85 0.72 0.00 0.95 0.37 K intron_retention CG32626 chrX - chrX_13726707_13726778 chrX_13726706_13726707;chrX_13726778_13726779 chrX_13726250_13726706;chrX_13726779_13726873 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Kdm4A chr2R - chr2R_3811118_3811173 chr2R_3811117_3811118;chr2R_3811173_3811174 chr2R_3810414_3811117;chr2R_3811174_3812037 0.00 NA NA 0.00 NA NA NA 23.08 0.00 NA NA 0.00 NA NA NA NA NA NA NA 6.25 NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA 0.00 7.14 NA NA 0.00 0.00 NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 K intron_retention I_chr3L_22859135_22860499,Ssl1,slif chr3L + chr3L_22872531_22872583 chr3L_22872530_22872531;chr3L_22872583_22872584 chr3L_22872448_22872530;chr3L_22872584_22872925 32.91 26.32 26.09 68.00 22.73 21.05 36.36 29.41 25.58 61.54 22.22 25.00 31.25 30.00 45.45 31.25 25.00 NA 41.18 26.83 40.00 42.86 35.29 28.12 64.29 66.67 33.33 50.00 55.56 27.59 71.01 29.03 23.40 27.27 42.86 52.17 22.73 35.48 32.50 32.31 52.94 21.82 33.33 34.38 24.24 35.90 23.08 31.37 35.90 45.45 28.95 34.48 19.35 37.50 37.04 34.29 27.03 39.02 K alternative_acceptor osa chr3R - chr3R_13521834_13522091 chr3R_13521873_13522091 chr3R_13522092_13522308;chr3R_13521645_13521833 79.51 78.89 81.82 79.59 76.06 83.08 79.27 77.42 77.51 78.02 80.30 76.38 78.46 82.26 86.21 74.03 69.01 80.00 75.76 77.14 74.63 82.27 80.54 83.33 77.05 78.48 81.65 79.27 83.48 81.25 80.00 86.27 79.51 77.98 78.35 75.73 78.89 76.86 80.82 84.21 85.51 79.49 76.67 79.63 80.77 83.54 80.77 83.60 78.26 76.83 79.84 77.14 77.14 78.05 80.90 81.03 82.93 81.18 K alternative_donor Chro,I_chr3L_22870968_22871036,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22871119_22871250 chr3L_22871119_22871225 chr3L_22871037_22871118;chr3L_22871251_22871262 30.38 NA NA 30.00 NA NA NA 36.36 33.33 NA NA NA NA NA NA 25.00 NA NA 30.00 33.33 NA NA 30.77 NA NA NA 50.00 NA NA NA NA NA NA 35.71 NA NA 16.67 NA 23.08 33.33 NA 25.00 NA NA NA NA NA NA 30.77 18.18 NA NA NA NA 25.00 NA NA NA K intron_retention rtGEF,I_chr2L_20359184_20360012,I_chr2L_20359856_20360012 chr2L + chr2L_20356802_20356875 chr2L_20356801_20356802;chr2L_20356875_20356876 chr2L_20356590_20356801;chr2L_20356876_20359233 3.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.14 NA NA NA NA NA 36.84 NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Su(H) chr2L + chr2L_15040321_15041094 chr2L_15040320_15040321;chr2L_15041094_15041095 chr2L_15039371_15040320;chr2L_15041095_15041975 0.00 0.00 0.00 6.67 0.00 0.00 10.00 10.53 2.56 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 5.26 11.76 0.00 0.00 NA NA 0.00 0.00 6.25 NA 0.00 0.00 5.26 3.57 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 2.63 NA 0.00 0.00 0.00 NA 0.00 2.94 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 NA K intron_retention Rcd1 chr2R - chr2R_10039432_10039568 chr2R_10039431_10039432;chr2R_10039568_10039569 chr2R_10039112_10039431;chr2R_10039569_10039844 16.52 26.32 NA 18.92 0.00 NA 0.00 6.67 18.75 NA 6.67 23.53 NA 30.77 0.00 30.77 0.00 0.00 31.58 12.50 NA 13.79 19.23 8.70 11.11 0.00 0.00 17.65 25.00 23.53 NA 21.43 15.38 22.73 5.56 0.00 21.43 4.17 13.33 5.26 25.00 19.35 21.05 26.09 0.00 NA 0.00 20.00 20.00 NA 19.23 NA 0.00 NA 19.05 20.00 NA 8.70 K jcn_only_AA mRpL20,I_chr3L_13010705_13010775,RI_chr3L_13010729_13010775 chr3L - chr3L_13010705_13010775;chr3L_13010713_13010775 chr3L_13010729_13010775 chr3L_13010776_13010875;chr3L_13010629_13010704 3.51 1.64 0.00 10.64 0.00 4.84 1.96 4.84 4.71 0.00 7.14 4.72 5.26 2.04 1.54 5.66 3.45 0.00 3.92 2.42 1.72 NA 4.23 8.06 8.57 3.28 0.00 4.17 2.94 2.56 13.43 3.45 6.00 4.00 5.71 3.03 6.12 3.92 3.12 1.28 0.00 3.57 3.39 6.25 4.41 4.94 4.17 2.38 2.75 8.57 4.23 5.71 4.48 0.00 1.52 1.52 1.43 2.50 K intron_retention heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27801288_27801517,I_chr3R_27801288_27801596 chr3R - chr3R_27801288_27801517 chr3R_27801287_27801288;chr3R_27801517_27801518 chr3R_27801282_27801287;chr3R_27801518_27801617 93.33 NA NA 75.00 NA NA 91.67 100.00 95.24 NA NA 93.33 NA 75.00 NA 90.91 NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention Ets21C,rempA chr2L - chr2L_547901_547977 chr2L_547900_547901;chr2L_547977_547978 chr2L_547288_547900;chr2L_547978_548218 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 4.17 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA K alternative_last_exon CG31140,F_chr3R_19799277_19802225 chr3R + chr3R_19805345_19807447 chr3R_19805345_19806249 chr3R_19807448_19812437 chr3R_19806250_19806709 chr3R_19805237_19805344 5.41 5.26 5.00 3.23 0.00 6.25 8.57 6.45 7.50 15.38 6.67 2.63 0.00 5.88 5.00 3.85 6.25 0.00 4.55 2.44 0.00 12.00 10.71 8.00 5.88 5.00 8.33 5.56 8.70 11.11 4.55 5.88 5.56 6.25 6.25 9.52 4.76 5.88 4.17 3.57 8.70 5.41 0.00 4.76 4.55 3.45 7.69 7.14 8.33 4.35 4.17 6.67 5.88 4.76 0.00 4.55 3.85 4.76 K alternative_donor CG17549,R_chr2L_19388305_19388473,RI_chr2L_19388570_19389427,I_chr2L_19388570_19389922 chr2L - chr2L_19388570_19389427;chr2L_19388570_19389926;chr2L_19388570_19389935 chr2L_19388570_19389764 chr2L_19388474_19388569;chr2L_19389936_19390022 33.33 NA NA 33.33 NA NA 0.00 20.00 50.00 0.00 NA 75.00 33.33 NA NA 66.67 NA NA NA 40.00 NA 20.00 NA NA NA NA NA NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA 20.00 NA NA NA NA 50.00 33.33 50.00 NA NA NA NA NA NA NA 60.00 NA K intron_retention sle chr3R + chr3R_6159036_6159218 chr3R_6159035_6159036;chr3R_6159218_6159219 chr3R_6158812_6159035;chr3R_6159219_6159305 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 1.57 0.00 0.00 0.00 0.14 0.00 0.00 1.52 0.00 0.00 0.00 0.83 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG31689,I_chr2L_2730373_2736310,I_chr2L_2730470_2736310,RI_chr2L_2736137_2736310,I_chr2L_2736431_2737036 chr2L + chr2L_2730470_2736173 chr2L_2730470_2736129 chr2L_2730383_2730469;chr2L_2736174_2736229 66.67 NA NA 62.50 NA NA NA NA 78.57 NA NA 60.00 NA NA 71.43 46.15 NA NA NA 88.89 NA NA 60.00 NA NA NA 57.14 NA NA NA NA NA NA 69.23 NA NA NA NA NA NA NA 66.67 NA 87.50 NA NA NA NA 54.55 NA 87.50 NA NA NA NA NA NA NA K jcn_only_AD eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341925_20342041;chr3L_20341636_20342041;chr3L_20341509_20342041;chr3L_20341865_20342041;chr3L_20341522_20342041;chr3L_20341751_20342041;chr3L_20341530_20342041;chr3L_20341629_20342041;chr3L_20341598_20342041;chr3L_20341759_20342041 chr3L_20341486_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 43.33 51.52 38.33 53.21 41.67 46.51 24.69 66.39 33.80 47.83 48.84 45.33 28.57 47.37 57.14 26.92 47.69 45.10 38.10 36.22 44.64 47.83 36.84 36.73 48.78 37.14 32.26 25.93 45.16 40.74 43.68 31.82 34.15 45.04 NA 37.93 32.65 25.00 37.93 20.34 54.55 51.61 33.33 44.90 51.35 46.67 41.03 27.50 45.45 27.66 32.26 50.00 43.33 NA 45.92 50.00 43.08 50.62 K jcn_only_AD CG3760,CG3770,CG12851 chr2R + chr2R_20826741_20826793 chr2R_20826745_20826793 chr2R_20826794_20826860;chr2R_20826672_20826740 0.65 1.26 0.77 0.77 0.00 1.82 0.00 0.00 1.37 0.91 0.00 0.45 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.45 1.06 0.58 2.11 2.40 2.05 2.13 1.27 0.00 0.93 0.00 1.25 0.62 0.48 0.00 0.65 0.00 0.00 0.71 1.15 0.76 0.53 1.58 0.00 1.56 0.93 0.67 0.00 0.47 0.49 0.65 0.42 0.00 1.04 0.94 0.93 2.27 1.85 0.70 K alternative_acceptor CG31531,I_chr3R_485548_485960,I_chr3R_485608_485960,noncoding_14584,I_chr3R_486122_506500,I_chr3R_496573_505950,I_chr3R_523978_526879 chr3R + chr3R_485399_485960 chr3R_485399_485957 chr3R_485382_485398;chr3R_485961_486060 85.71 NA NA 91.67 NA NA 66.67 66.67 90.48 88.89 NA 72.22 NA 90.00 NA 72.22 87.50 100.00 93.33 93.75 NA 81.82 68.75 66.67 NA 87.50 NA NA 91.67 87.50 70.00 NA 83.33 92.86 75.00 NA 66.67 60.00 NA 85.71 100.00 84.21 NA 91.67 NA 88.89 NA 94.74 76.92 NA 70.00 77.78 NA NA 90.00 NA NA 83.33 K intron_retention RecQ5 chr3L - chr3L_14623545_14623619 chr3L_14623544_14623545;chr3L_14623619_14623620 chr3L_14623526_14623544;chr3L_14623620_14624918 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Prx5037 chr3R - chr3R_13371576_13371631 chr3R_13371575_13371576;chr3R_13371631_13371632 chr3R_13370960_13371575;chr3R_13371632_13371773 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA I_chr3L_3223943_3224313,CG11505 chr3L + chr3L_3232240_3232300 chr3L_3232240_3232297 chr3L_3231909_3232239;chr3L_3232301_3232406 87.88 90.91 94.19 88.81 85.71 89.47 95.31 86.96 91.19 86.49 85.96 84.68 88.37 83.72 91.92 90.24 86.96 91.67 86.90 79.39 87.93 90.00 89.80 91.89 98.04 86.52 88.76 92.86 88.10 85.71 87.76 77.78 85.29 85.99 80.00 93.85 92.54 92.50 88.73 86.73 85.71 83.71 90.00 91.49 84.00 81.82 84.78 76.32 88.74 87.88 90.59 86.89 83.33 86.96 92.08 86.67 88.24 79.17 K jcn_only_AA Pdp1,RI_chr3L_7809841_7810536,I_chr3L_7813130_7818683,I_chr3L_7831960_7846282 chr3L - chr3L_7809712_7810536;chr3L_7809826_7810536 chr3L_7809841_7810536 chr3L_7810537_7810636;chr3L_7809584_7809711 1.56 2.56 0.00 2.04 1.92 1.61 4.55 1.47 0.66 1.35 1.85 0.00 0.00 2.17 3.57 0.00 0.00 1.61 1.79 0.00 0.00 3.03 0.00 2.02 0.00 4.00 2.65 1.04 1.49 0.00 0.00 2.78 6.67 1.19 1.56 2.70 0.75 0.99 1.56 3.45 2.50 0.68 2.44 1.79 2.99 1.54 3.17 3.09 0.93 1.05 1.59 1.64 0.00 0.00 0.00 1.27 0.00 4.55 K intron_retention CG14782,mei-38 chrX + chrX_1371322_1371408 chrX_1371321_1371322;chrX_1371408_1371409 chrX_1371127_1371321;chrX_1371409_1372262 0.00 0.00 0.00 6.67 0.00 0.00 0.00 2.70 4.08 0.00 0.00 4.08 0.00 3.85 0.00 0.00 NA 0.00 0.00 0.00 0.00 3.45 2.27 0.00 0.00 0.00 6.98 20.00 31.25 0.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 0.00 4.08 1.27 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 5.88 0.00 0.00 0.00 3.45 0.00 0.00 0.00 K alternative_acceptor Sema-1a,R_chr2L_8564297_8610230,E_chr2L_8622170_8631026 chr2L + chr2L_8661488_8662456 chr2L_8661488_8662438 chr2L_8661359_8661487;chr2L_8662457_8662646 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 41.18 NA NA NA NA NA NA 50.00 NA NA NA NA NA NA 55.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG34376 chr3R + chr3R_18284953_18285563 chr3R_18284952_18284953;chr3R_18285563_18285564 chr3R_18284831_18284952;chr3R_18285564_18286449 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA 90.00 100.00 NA 100.00 100.00 100.00 100.00 94.12 100.00 100.00 NA NA 90.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 94.74 100.00 94.12 94.12 NA 93.33 NA NA 93.33 100.00 93.75 100.00 94.12 100.00 100.00 NA 91.67 90.00 100.00 100.00 100.00 100.00 K multi_cassette CRMP,I_chr3R_1401648_1403314 chr3R + chr3R_1401648_1403314 chr3R_1401648_1401896;chr3R_1402136_1402757;chr3R_1402982_1403314 chr3R_1401897_1402135;chr3R_1402758_1402981 chr3R_1401548_1401647;chr3R_1403315_1403414 100.00 100.00 100.00 77.78 100.00 100.00 100.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 90.00 93.33 100.00 80.00 100.00 75.00 71.43 88.89 100.00 87.50 100.00 100.00 85.71 77.78 95.00 81.25 91.67 100.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 90.00 100.00 90.00 100.00 100.00 100.00 100.00 92.86 K intron_retention CG2135 chr3R - chr3R_27595885_27595939 chr3R_27595884_27595885;chr3R_27595939_27595940 chr3R_27595878_27595884;chr3R_27595940_27596067 6.67 12.00 6.45 25.64 3.12 4.76 3.12 6.74 6.98 NA 0.00 NA 2.22 0.00 9.09 11.90 3.70 0.00 5.41 5.17 3.45 4.17 19.23 11.54 15.38 0.00 5.00 NA 7.69 10.53 21.95 NA 0.00 8.33 21.05 NA 0.00 6.67 18.52 10.53 10.53 7.14 0.00 12.50 NA 9.52 6.67 NA 9.64 0.00 9.68 4.76 0.00 6.67 6.52 13.64 6.12 5.88 K jcn_only_AD CG17471,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1217104_1217473;chr4_1217104_1217333;chr4_1217104_1217302 chr4_1217104_1217383 chr4_1217009_1217103;chr4_1217474_1217480 67.57 NA NA NA NA NA 69.70 72.97 69.57 NA NA 66.67 75.00 NA NA 57.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 48.15 NA NA NA NA NA NA NA 64.52 NA NA NA NA NA NA 67.57 NA NA NA NA NA NA NA NA NA K jcn_only_AA Ard1,noncoding_11800 chr3L + chr3L_9965498_9965994;chr3L_9965498_9966021 chr3L_9965498_9965980 chr3L_9965419_9965497;chr3L_9966022_9966054 88.44 NA NA 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.88 K intron_retention Yeti chr2RHet - chr2RHet_471015_471083 chr2RHet_471014_471015;chr2RHet_471083_471084 chr2RHet_470036_471014;chr2RHet_471084_471815 0.93 1.23 1.01 0.52 1.27 1.66 0.69 1.34 1.38 0.00 1.60 1.83 1.18 1.42 0.00 1.08 1.44 0.00 1.13 0.78 0.00 0.00 0.00 0.00 0.00 0.83 1.49 1.06 4.17 2.30 0.68 0.00 0.00 1.57 0.00 0.00 0.93 0.00 0.00 0.00 0.68 0.83 1.32 1.71 2.50 1.46 0.49 1.48 1.81 1.12 0.00 1.45 0.00 0.00 0.36 0.00 1.49 1.86 K alternative_acceptor Cip4,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4363128_4363987 chr3L_4363386_4363987 chr3L_4363988_4364067;chr3L_4363028_4363127 3.31 2.86 0.93 2.99 5.00 3.53 23.74 2.82 3.32 1.65 4.35 3.40 2.90 4.40 2.94 4.37 2.90 2.15 1.92 1.77 2.50 4.13 3.02 3.82 6.48 4.29 6.67 3.85 5.84 3.37 1.88 5.32 3.53 1.85 3.10 1.15 2.79 2.22 1.48 4.12 4.96 2.51 4.62 2.10 3.70 3.50 2.37 2.94 2.31 3.39 2.69 1.46 3.39 4.24 3.31 2.34 4.23 4.98 K alternative_acceptor Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754356_15755184;chrX_15754356_15755256;chrX_15754356_15755172;chrX_15754356_15755409 chrX_15754356_15755268 chrX_15754256_15754355;chrX_15755410_15755509 20.00 14.29 18.75 26.67 18.75 NA 15.15 24.00 35.37 NA NA 16.42 21.74 25.00 16.67 33.96 18.18 20.00 25.81 16.00 NA 11.11 24.00 20.00 13.33 NA 25.00 NA 18.18 17.65 22.73 NA 19.35 18.37 12.50 NA 21.74 NA NA 17.86 21.43 27.08 30.30 17.39 28.57 16.00 NA 21.05 20.00 NA 15.79 25.00 NA 16.67 36.00 NA 20.00 12.50 N jcn_only_AA stc chr2L + chr2L_15114214_15114448;chr2L_15114214_15114311 chr2L_15114214_15114299 chr2L_15114049_15114213;chr2L_15114449_15115753 96.95 97.14 95.83 97.60 96.77 96.92 94.95 97.00 96.35 97.06 98.11 97.52 96.67 95.95 91.89 98.21 100.00 96.77 98.15 97.13 94.44 97.74 95.08 98.02 98.88 95.83 98.33 96.12 96.80 96.95 94.57 97.71 81.61 96.19 95.88 97.62 97.98 98.04 99.13 97.02 96.23 94.81 98.31 96.77 97.56 94.76 97.83 97.13 95.86 96.49 97.93 91.38 100.00 97.18 93.10 98.57 90.48 96.87 K intron_retention CG7857 chr3L - chr3L_15497258_15497318 chr3L_15497257_15497258;chr3L_15497318_15497319 chr3L_15496700_15497257;chr3L_15497319_15498012 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Rab10,I_chrX_20122832_20123581 chrX + chrX_20122832_20123311 chrX_20123028_20123311 chrX_20123312_20123511;chrX_20122732_20122831 3.70 4.26 3.23 3.53 5.10 2.97 3.75 3.33 3.38 6.67 6.45 4.60 3.85 3.45 3.15 3.55 2.02 2.06 1.74 3.32 4.00 3.95 3.68 3.45 4.72 1.85 4.58 8.57 13.51 4.76 6.56 4.62 4.00 4.70 3.26 5.62 5.70 2.73 3.68 5.98 5.08 3.32 3.70 2.08 5.36 6.32 4.20 10.91 3.69 1.96 3.57 4.35 3.70 3.49 3.55 1.68 2.12 3.85 K intron_retention CG16833,I_chr2L_10994022_10994325,I_chr2L_10994919_10997334 chr2L + chr2L_10989871_10991058 chr2L_10989870_10989871;chr2L_10991058_10991059 chr2L_10989656_10989870;chr2L_10991059_10991885 6.06 20.00 0.00 0.00 NA 0.00 NA 10.71 6.25 NA NA 2.94 NA NA NA 14.81 NA NA NA 7.14 NA NA 13.33 NA 11.76 NA 10.53 NA NA NA 0.00 NA 6.25 11.76 NA NA 0.00 15.00 12.50 10.71 NA 4.88 NA 5.88 NA 0.00 NA 0.00 5.00 NA 19.23 NA 0.00 NA 0.00 NA NA 0.00 K alternative_acceptor osa,I_chr3R_13523609_13523702 chr3R - chr3R_13523636_13523702 chr3R_13523639_13523702 chr3R_13523703_13523802;chr3R_13523387_13523635 91.49 88.33 97.01 90.54 91.89 90.14 92.98 91.67 93.68 93.98 85.00 89.06 87.27 91.30 94.44 92.06 90.48 90.00 91.11 91.11 95.12 93.27 87.77 91.49 90.00 96.15 88.24 87.32 88.97 93.38 89.71 92.54 92.11 95.45 88.46 92.86 87.02 92.77 93.80 93.60 91.80 93.18 95.24 88.31 91.78 93.51 91.49 91.70 91.96 87.04 88.46 84.78 96.77 84.62 90.28 95.00 91.43 90.77 K intron_retention MB8.chr3R.pasa.66,CG1091,I_chr3R_2909301_2909411,I_chr3R_2910029_2910096,RI_chr3R_2910490_2910686,RI_chr3R_2911041_2911135,RI_chr3R_2946518_2946663 chr3R - chr3R_2909309_2909411 chr3R_2909308_2909309;chr3R_2909411_2909412 chr3R_2908851_2909308;chr3R_2909412_2909511 2.44 3.17 3.92 15.62 0.00 0.00 4.60 4.11 3.85 0.00 0.00 5.41 0.00 9.09 0.00 5.77 2.22 0.00 3.57 4.42 1.92 9.09 2.44 0.00 2.38 0.00 4.29 10.00 0.00 0.00 1.39 2.44 4.08 4.48 0.00 5.71 2.27 1.61 0.00 0.00 7.41 2.38 4.55 0.00 6.82 3.90 1.68 NA 5.62 1.75 4.76 3.57 4.29 0.00 3.57 2.27 2.29 8.82 K alternative_acceptor ald chr3R + chr3R_13499199_13499298 chr3R_13499199_13499270 chr3R_13498643_13499198;chr3R_13499299_13499550 3.92 2.44 3.85 11.54 8.70 5.26 0.00 0.00 7.50 NA 7.69 3.03 0.00 0.00 7.41 5.00 0.00 5.56 4.55 6.35 8.33 0.00 4.44 10.26 0.00 4.76 6.25 0.00 3.85 11.11 0.00 6.67 6.25 2.70 0.00 0.00 0.00 0.00 2.44 4.55 0.00 2.04 7.14 7.69 5.26 7.32 7.41 4.00 2.94 3.77 2.17 5.00 0.00 7.89 4.76 2.00 2.27 2.86 K jcn_only_AA drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9385395_9389317 chr2R_9389255_9389317 chr2R_9389318_9389399;chr2R_9385297_9385394 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 1.47 0.61 0.00 0.00 0.00 0.00 0.00 4.17 0.76 0.68 1.23 0.00 0.58 0.00 0.00 0.00 0.00 1.12 0.96 0.00 1.08 1.67 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.68 0.00 0.00 0.00 0.79 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.00 K alternative_acceptor Nplp2,I_chr3L_13349726_13349896 chr3L + chr3L_13349953_13350119 chr3L_13349953_13350107 chr3L_13349897_13349952;chr3L_13350120_13350349 99.98 99.99 100.00 99.98 99.98 100.00 99.99 99.98 99.98 100.00 99.97 99.97 99.98 99.99 99.99 99.98 99.96 99.99 99.99 99.99 99.94 100.00 100.00 99.96 99.97 99.98 99.97 99.42 100.00 100.00 99.99 100.00 100.00 99.98 100.00 100.00 99.97 99.97 100.00 99.99 99.98 99.98 99.97 99.97 100.00 99.96 99.98 99.97 99.98 100.00 100.00 99.98 99.96 99.97 99.98 99.98 99.98 100.00 K intron_retention CG6340,I_chrX_15402291_15403750 chrX + chrX_15379302_15379364 chrX_15379301_15379302;chrX_15379364_15379365 chrX_15379155_15379301;chrX_15379365_15380635 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 K intron_retention CaBP1 chr2L - chr2L_16356471_16356539 chr2L_16356470_16356471;chr2L_16356539_16356540 chr2L_16354796_16356470;chr2L_16356540_16356723 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.22 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 1.18 5.02 3.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG4673,I_chr3R_21449128_21449210,I_chr3R_21452371_21452464,I_chr3R_21452407_21452453 chr3R - chr3R_21437172_21437302 chr3R_21437172_21437243 chr3R_21436770_21437171;chr3R_21437303_21437656 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 98.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CtBP chr3R + chr3R_8846837_8846897 chr3R_8846836_8846837;chr3R_8846897_8846898 chr3R_8846576_8846836;chr3R_8846898_8847029 0.00 0.00 0.00 0.78 1.49 0.00 0.84 1.61 2.02 0.00 1.04 3.28 3.61 3.03 0.00 2.78 0.00 0.00 0.00 1.69 2.60 2.25 0.00 0.00 0.00 1.45 2.63 1.04 0.00 0.00 1.64 0.00 0.00 1.71 0.00 0.00 4.24 0.00 0.00 0.00 0.00 1.29 0.00 1.14 0.00 0.00 0.00 0.00 1.20 0.00 0.83 2.78 0.00 0.00 2.17 0.00 0.00 0.00 K intron_retention RI_chr3R_5165997_5180143,CG33936,I_chr3R_5167726_5180143,R_chr3R_5168211_5180143,RI_chr3R_5168214_5168297,I_chr3R_5168617_5180143,snoRNA:Me18S-G1358a,RI_chr3R_5183458_5183705 chr3R + chr3R_5168214_5180143 chr3R_5168213_5168214;chr3R_5180143_5180144 chr3R_5168114_5168213;chr3R_5180144_5180232 3.08 2.91 3.64 8.54 4.11 3.12 3.35 3.29 3.10 6.98 2.35 3.54 2.22 3.18 3.96 4.46 4.20 2.20 3.08 1.80 3.33 2.27 4.20 4.12 6.98 2.20 4.50 9.09 2.13 3.53 2.27 0.00 6.67 2.53 6.25 5.33 3.80 2.35 0.00 2.70 0.00 1.92 1.80 3.03 0.00 0.00 1.33 5.26 3.42 0.00 3.54 3.77 0.00 0.00 2.80 0.00 0.00 0.00 K mutually_exclusive Pfk,I_chr2R_5999081_6000140,E_chr2R_6001157_6001630 chr2R + chr2R_6000676_6001630,chr2R_6001740_6002421 chr2R_6000676_6001047,chr2R_6001157_6002421 chr2R_6001631_6001739 chr2R_6001048_6001156 chr2R_6000521_6000675;chr2R_6002422_6002610 66.67 68.25 64.71 75.00 51.85 55.17 67.31 55.81 60.00 66.67 56.00 66.67 28.57 75.00 68.00 45.45 77.78 85.71 47.06 54.95 70.00 89.19 68.00 75.00 63.16 76.19 73.81 73.53 82.81 60.38 65.22 65.22 63.83 58.14 67.50 88.10 65.67 70.97 69.72 72.46 68.75 66.67 76.19 69.12 73.08 65.38 66.07 66.67 63.64 63.77 65.38 61.22 67.86 67.92 60.00 68.75 66.67 80.95 K jcn_only_AA msn,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2564696_2565600 chr3L_2564756_2565600 chr3L_2565601_2565613;chr3L_2564397_2564695 63.06 56.52 71.43 81.13 NA 46.88 82.50 79.63 67.61 48.65 NA 94.87 70.59 NA 69.70 91.18 56.52 85.19 74.07 55.68 66.67 17.31 35.77 42.16 27.45 84.85 50.00 30.77 73.77 82.54 81.63 65.22 51.67 54.55 50.00 83.10 43.70 44.44 36.90 58.93 71.43 67.03 77.27 62.96 63.16 60.98 36.96 80.22 63.46 26.09 36.73 51.52 65.79 36.73 73.53 54.76 50.00 75.00 K alternative_acceptor DppIII,CG7352 chr3R + chr3R_4170206_4170530 chr3R_4170206_4170512 chr3R_4170198_4170205;chr3R_4170531_4170745 0.00 NA NA 0.00 NA NA 4.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 5.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG11063 chrX - chrX_13721139_13721372 chrX_13721154_13721372 chrX_13721373_13721542;chrX_13721076_13721138 17.31 18.87 20.37 20.21 18.87 17.65 19.15 20.45 25.00 9.30 28.21 19.51 19.51 14.89 10.91 23.64 22.86 17.31 20.83 19.38 19.15 17.42 15.00 16.07 9.76 21.82 16.39 10.81 13.59 18.18 17.65 15.00 18.89 14.10 16.18 18.06 24.59 16.00 17.86 10.17 20.34 14.41 24.24 12.00 15.54 16.88 7.81 18.23 18.56 16.22 14.29 8.82 15.28 10.00 14.67 11.43 14.67 16.06 K alternative_donor CG10365,I_chr3R_19549381_19554106,I_chr3R_19554176_19554388 chr3R + chr3R_19549425_19554388;chr3R_19549452_19554388 chr3R_19549381_19554388 chr3R_19554389_19554488;chr3R_19549281_19549380 92.45 90.91 96.00 93.55 93.75 100.00 90.91 91.30 90.70 100.00 87.50 86.54 80.00 94.44 88.89 87.50 89.47 94.12 89.66 82.50 100.00 NA 94.29 96.43 94.44 96.15 90.91 NA 87.50 96.67 95.65 87.50 93.33 81.48 93.75 NA 95.65 86.96 92.86 91.11 93.33 87.50 88.89 91.67 92.59 92.11 100.00 92.31 86.05 89.47 96.43 100.00 NA 100.00 89.29 100.00 NA 94.12 K jcn_only_AA CLIP-190,I_chr2L_17385896_17394432,RI_chr2L_17386394_17394432,I_chr2L_17394493_17404060,I_chr2L_17401291_17404060,I_chr2L_17401582_17402303 chr2L + chr2L_17385896_17394432 chr2L_17385896_17394429 chr2L_17385796_17385895;chr2L_17394433_17394492 96.06 96.30 91.43 94.34 NA 100.00 100.00 94.23 93.98 NA NA 100.00 100.00 100.00 93.94 94.59 93.10 100.00 100.00 98.46 NA NA 94.74 90.91 100.00 100.00 95.65 NA 85.00 NA 100.00 NA 100.00 95.83 95.24 95.65 97.50 100.00 94.12 93.94 NA 94.23 NA NA NA 100.00 NA 95.24 100.00 87.50 98.00 NA NA NA 100.00 NA NA NA K cassette Map205,I_chr3R_27884868_27890856,I_chr3R_27891135_27892050 chr3R - chr3R_27884868_27892050 chr3R_27884868_27887167;chr3R_27887234_27892050 chr3R_27887168_27887233 chr3R_27884768_27884867;chr3R_27892051_27892150 1.55 2.47 1.05 1.55 2.25 1.04 0.00 1.40 1.77 2.08 0.00 2.42 0.00 2.02 0.86 0.55 1.75 1.83 2.38 2.61 0.00 2.04 0.81 1.27 0.00 1.68 0.71 1.27 1.69 1.25 3.12 2.63 1.18 1.36 1.61 1.45 0.00 1.32 1.45 3.85 2.56 0.87 0.96 1.69 3.57 1.92 3.57 1.41 0.99 2.70 2.56 3.03 0.00 0.00 0.88 1.72 1.89 2.27 K jcn_only_AD Gp150,I_chr2R_18205316_18205386,I_chr2R_18213233_18213308 chr2R + chr2R_18205243_18205386;chr2R_18205316_18205386;chr2R_18205282_18205386 chr2R_18205274_18205386 chr2R_18205387_18205459;chr2R_18205216_18205242 0.91 1.93 0.50 1.26 0.00 0.00 0.69 0.32 0.51 2.70 0.91 0.53 0.00 0.54 0.43 0.71 0.22 0.59 0.22 0.78 0.53 2.30 3.14 2.00 1.89 0.57 1.15 8.16 5.80 3.33 0.57 6.78 0.00 0.81 1.96 2.86 2.10 2.78 1.60 2.78 0.00 0.71 1.17 0.00 2.02 2.13 1.41 0.00 0.76 4.48 0.48 0.66 2.56 2.94 0.40 2.99 3.85 1.90 K intron_retention Vps13,I_chr2R_3464510_3464571 chr2R + chr2R_3467120_3467180 chr2R_3467119_3467120;chr2R_3467180_3467181 chr2R_3466981_3467119;chr2R_3467181_3467464 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpS30 chr3R + chr3R_16676350_16676576 chr3R_16676349_16676350;chr3R_16676576_16676577 chr3R_16676349_16676349;chr3R_16676577_16676665 0.14 0.00 0.14 0.00 0.00 0.20 0.38 0.10 0.10 0.54 0.00 0.17 0.00 0.00 0.00 0.00 0.16 0.09 0.06 0.00 0.00 0.38 4.00 2.56 5.26 0.29 4.65 2.05 1.30 0.00 0.37 0.00 0.00 0.07 0.00 1.65 0.00 3.03 0.00 0.40 0.43 0.07 0.17 0.00 0.17 0.66 1.32 0.22 0.12 1.55 1.68 0.00 0.31 0.00 0.00 1.57 0.66 0.14 K intron_retention Snx6,RI_chr2L_8218680_8218853,I_chr2L_8230332_8238998 chr2L - chr2L_8219299_8219361 chr2L_8219298_8219299;chr2L_8219361_8219362 chr2L_8219116_8219298;chr2L_8219362_8219806 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.32 0.00 0.00 0.70 1.67 0.00 0.00 0.44 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG30387,I_chr2R_17184688_17191389 chr2R + chr2R_17196054_17197133 chr2R_17196053_17196054;chr2R_17197133_17197134 chr2R_17195957_17196053;chr2R_17197134_17197202 63.48 57.14 46.15 44.44 NA 60.00 84.62 58.82 56.67 87.50 NA 60.71 63.64 63.64 52.63 73.33 70.00 68.75 58.33 68.75 50.00 19.35 47.83 73.33 78.57 66.67 68.75 NA 81.82 60.00 55.56 66.67 66.67 78.57 57.14 69.23 53.33 45.00 68.00 64.00 72.22 44.44 60.00 50.00 60.00 66.67 45.00 63.64 66.67 54.55 66.67 70.00 45.83 63.64 53.33 75.00 58.82 63.33 K intron_retention hipk,RI_chr3L_548068_552227 chr3L + chr3L_571972_572077 chr3L_571971_571972;chr3L_572077_572078 chr3L_571742_571971;chr3L_572078_572545 0.00 0.00 0.00 0.45 0.38 0.32 0.00 0.22 0.26 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.31 0.70 0.00 0.13 0.00 0.94 0.10 0.00 0.00 0.30 0.09 0.16 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.50 0.00 K intron_retention tral,I_chr3L_12512171_12512251 chr3L + chr3L_12508391_12508463 chr3L_12508390_12508391;chr3L_12508463_12508464 chr3L_12508166_12508390;chr3L_12508464_12508670 100.00 100.00 100.00 100.00 97.73 100.00 99.12 99.17 99.29 100.00 100.00 99.03 100.00 98.36 100.00 100.00 100.00 100.00 98.73 98.94 100.00 98.41 100.00 100.00 100.00 100.00 98.61 100.00 100.00 100.00 100.00 96.00 98.25 100.00 100.00 100.00 96.72 100.00 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 99.12 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 K multi_cassette Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24348983_24351592 chr3R_24348983_24349248;chr3R_24349420_24349501;chr3R_24349697_24349755;chr3R_24349940_24349995;chr3R_24351030_24351138;chr3R_24351310_24351592 chr3R_24349249_24349419;chr3R_24349502_24349696;chr3R_24349756_24349939;chr3R_24349996_24351029;chr3R_24351139_24351309 chr3R_24348417_24348982;chr3R_24351593_24351772 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 85.71 90.91 100.00 96.88 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585716_2586402 chr3L_2585715_2585716;chr3L_2586402_2586403 chr3L_2585639_2585715;chr3L_2586403_2586502 100.00 97.06 98.18 100.00 100.00 97.78 98.89 99.02 100.00 100.00 100.00 100.00 98.33 100.00 100.00 100.00 100.00 97.78 98.41 98.67 97.22 100.00 100.00 100.00 100.00 100.00 100.00 93.33 97.44 100.00 100.00 100.00 97.67 100.00 97.50 100.00 100.00 100.00 100.00 98.21 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 99.10 100.00 100.00 96.30 100.00 100.00 98.18 100.00 100.00 94.74 K jcn_only_AD for chr2L - chr2L_3626217_3634238 chr2L_3626217_3626336 chr2L_3625997_3626216 20.19 14.29 0.00 10.00 NA 27.27 20.00 6.25 23.44 NA 3.57 10.71 NA 30.43 13.33 12.00 NA 24.14 20.00 9.52 12.50 62.07 23.33 25.81 8.70 8.70 NA NA NA NA 33.33 NA 25.58 14.29 NA NA 38.46 30.43 31.11 18.75 NA 20.37 NA 33.33 36.36 28.00 NA 20.83 16.67 NA NA NA NA NA NA 30.00 NA 13.64 K intron_retention Dcp-1 chr2R + chr2R_19439398_19439823 chr2R_19439397_19439398;chr2R_19439823_19439824 chr2R_19438818_19439397;chr2R_19439824_19440386 0.00 NA NA NA NA NA 7.69 NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 10.53 NA 0.00 NA NA NA NA NA 6.67 14.29 NA NA NA 12.50 0.00 NA 0.00 NA NA 15.38 4.35 NA 0.00 NA NA 9.52 0.00 NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 K intron_retention M(2)21AB,I_chr2L_110878_111037,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_111118_112689 chr2L_111117_111118;chr2L_112689_112690 chr2L_111104_111117;chr2L_112690_112789 33.33 NA NA NA NA NA 38.10 66.67 33.33 NA NA NA NA NA NA 29.41 NA 21.43 NA 33.33 NA 5.00 NA NA NA NA 33.33 NA NA NA NA NA NA 36.84 NA NA 30.77 NA NA NA NA NA NA NA NA NA NA NA 61.54 NA 50.00 NA NA NA NA NA NA NA K intron_retention RI_chr3R_5165997_5180143,CG33936,noncoding_15544,I_chr3R_5167726_5180143,R_chr3R_5168211_5180143,RI_chr3R_5168214_5168297,I_chr3R_5168617_5180143,snoRNA:Me18S-G1358a,RI_chr3R_5183458_5183705 chr3R + chr3R_5167726_5167941 chr3R_5167725_5167726;chr3R_5167941_5167942 chr3R_5167626_5167725;chr3R_5167942_5167998 98.70 98.68 100.00 99.28 100.00 98.31 100.00 98.41 98.21 93.62 98.63 99.25 98.68 98.20 99.36 98.47 98.92 99.17 99.32 98.70 100.00 100.00 96.75 98.94 98.61 99.31 100.00 100.00 94.37 97.22 98.38 100.00 97.50 99.11 95.65 98.82 100.00 100.00 98.41 98.78 95.89 99.55 95.92 97.30 98.08 96.36 100.00 96.08 98.61 98.70 96.95 98.96 98.68 98.36 99.38 98.68 100.00 98.89 K jcn_only_AA CG7903,I_chr3R_25820462_25820871,I_chr3R_25820814_25820871 chr3R - chr3R_25820456_25820514 chr3R_25820462_25820514 chr3R_25820515_25820800;chr3R_25820362_25820455 95.40 76.92 96.30 95.65 NA NA 86.96 88.24 97.73 93.10 NA 91.11 NA NA 94.87 92.00 96.55 95.45 75.00 95.56 100.00 100.00 98.21 95.83 100.00 90.00 95.35 95.24 90.91 94.29 95.45 96.00 92.00 87.50 97.50 96.67 98.39 100.00 91.07 90.00 94.12 97.26 88.89 96.77 88.24 93.88 88.89 92.68 97.87 93.02 95.74 96.55 98.00 84.85 97.44 100.00 98.00 88.41 K multi_cassette mthl10 chr3L - chr3L_333717_334974 chr3L_333717_333941;chr3L_334120_334237;chr3L_334395_334974 chr3L_333942_334119;chr3L_334238_334394 chr3L_333679_333716;chr3L_334975_335169 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA K intron_retention mav,RI_chr4_645290_646129 chr4 - chr4_645568_646129 chr4_645567_645568;chr4_646129_646130 chr4_645398_645567;chr4_646130_646229 97.43 92.86 93.75 100.00 90.00 100.00 96.67 97.22 97.30 NA NA 95.24 100.00 94.74 93.33 97.56 95.45 100.00 96.15 96.55 83.33 100.00 100.00 100.00 100.00 90.91 100.00 100.00 NA 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 NA 96.43 95.00 100.00 NA 94.44 100.00 92.31 97.30 NA 94.74 NA NA NA 100.00 90.00 90.91 100.00 K alternative_donor gus,I_chr2R_1009158_1009345,RI_chr2R_1009158_1011540,I_chr2R_1009346_1015730 chr2R - chr2R_1009158_1015801;chr2R_1009158_1015735 chr2R_1009158_1015651 chr2R_1009058_1009157;chr2R_1015802_1015818 20.00 NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG6133 chrX - chrX_4005618_4005675 chrX_4005617_4005618;chrX_4005675_4005676 chrX_4005126_4005617;chrX_4005676_4007500 0.00 0.00 0.00 2.94 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.38 0.00 3.92 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 0.00 0.00 0.00 K jcn_only_AD Ras85D,I_chr3R_5338160_5338509,EI_chr3R_5338175_5338279,I_chr3R_5338175_5338299 chr3R - chr3R_5338175_5338509;chr3R_5338175_5338279 chr3R_5338175_5338299 chr3R_5338075_5338174;chr3R_5338510_5338609 0.69 0.56 1.21 1.40 0.00 0.90 0.71 0.53 0.84 0.73 0.40 0.77 0.61 1.14 0.00 0.00 0.98 0.87 0.43 0.65 0.41 0.53 1.52 1.52 0.00 0.94 2.55 2.16 1.36 1.21 0.35 1.04 0.00 0.85 0.63 1.60 0.00 1.91 0.00 0.58 0.37 0.00 0.51 0.00 0.31 1.29 0.48 0.46 0.93 0.00 2.56 0.81 0.58 1.50 0.69 2.11 0.49 1.18 K jcn_only_AD CG3508 chr3R + chr3R_10486021_10486096 chr3R_10486033_10486096 chr3R_10486097_10486164;chr3R_10485968_10486020 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.48 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 96.15 100.00 NA 100.00 100.00 100.00 100.00 94.44 100.00 NA 100.00 100.00 100.00 100.00 98.11 100.00 100.00 NA 100.00 97.44 97.92 95.00 96.00 100.00 100.00 96.55 100.00 100.00 97.22 96.15 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 96.77 97.30 K intron_retention jog,I_chrX_19730788_19739571 chrX - chrX_19730788_19742099 chrX_19730787_19730788;chrX_19742099_19742100 chrX_19730688_19730787;chrX_19742100_19742225 32.29 NA NA NA NA NA NA 36.36 33.33 NA NA NA NA NA 45.45 50.00 NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA 0.00 NA 31.25 NA 0.00 NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor gem,I_chr2R_6015083_6015660 chr2R + chr2R_6016198_6016327 chr2R_6016198_6016288 chr2R_6016086_6016197;chr2R_6016328_6016534 18.49 19.59 15.31 23.08 27.16 18.42 12.17 18.49 18.69 25.00 19.72 16.57 20.88 22.62 15.96 17.12 20.41 19.18 17.50 17.14 18.29 34.74 12.75 16.67 17.89 37.50 9.93 19.35 36.36 22.11 24.19 17.86 21.92 18.01 21.33 13.33 21.09 21.13 17.61 20.47 21.95 19.21 16.85 15.91 18.18 20.00 9.90 21.54 15.35 17.05 17.65 24.36 17.50 14.44 19.44 14.29 15.75 20.00 K jcn_only_AA CG11006,F_chr3L_12799159_12799339 chr3L + chr3L_12799438_12799952;chr3L_12799438_12800192;chr3L_12799438_12799955;chr3L_12799438_12799967 chr3L_12799438_12800078 chr3L_12799340_12799437;chr3L_12800193_12800930 2.27 NA NA 3.85 NA 0.00 NA 3.33 2.22 0.00 NA 0.00 NA NA NA NA NA NA NA 2.27 NA 9.26 5.00 3.33 0.00 NA NA 5.26 1.96 3.70 NA NA 2.47 NA 0.00 0.00 4.17 0.00 5.56 2.99 0.00 0.00 NA 4.00 4.65 4.17 NA 1.28 2.86 0.00 0.00 NA 0.00 NA NA 0.00 NA 2.27 K intron_retention Su(var)205,RI_chr2L_8212717_8212766 chr2L - chr2L_8210862_8210978 chr2L_8210861_8210862;chr2L_8210978_8210979 chr2L_8210730_8210861;chr2L_8210979_8211205 8.74 7.48 9.09 6.04 8.08 7.76 23.00 9.92 7.87 9.80 10.34 8.43 5.62 9.14 12.73 5.75 8.46 8.74 9.38 8.00 6.42 10.23 8.00 9.84 19.28 33.57 32.10 19.23 47.95 2.27 7.95 8.93 9.52 9.52 16.87 2.56 7.23 5.19 16.28 8.28 15.28 8.98 11.72 8.74 7.89 6.07 5.83 5.62 7.69 8.61 6.85 9.17 8.89 9.71 8.12 9.93 7.03 5.52 K alternative_donor mys,I_chrX_7958795_7961094 chrX + chrX_7955908_7957872;chrX_7955914_7957872;chrX_7955759_7957872;chrX_7956114_7957872;chrX_7955901_7957872;chrX_7956125_7957872;chrX_7955967_7957872 chrX_7955904_7957872 chrX_7957873_7958492;chrX_7955741_7955758 6.38 10.45 8.40 5.32 4.63 5.45 7.30 3.98 6.27 6.10 6.67 5.75 2.63 6.38 5.16 8.62 5.60 4.72 6.37 4.01 5.69 6.59 11.96 15.38 14.29 4.94 14.29 8.11 4.07 12.77 5.78 5.08 5.68 7.14 11.86 14.81 8.89 8.62 10.59 6.28 5.77 5.03 8.25 6.12 4.40 10.31 16.67 4.23 5.77 15.15 14.00 10.17 10.71 18.75 5.08 16.67 12.66 6.15 K intron_retention Arf84F,CG18193 chr3R + chr3R_4167380_4167437 chr3R_4167379_4167380;chr3R_4167437_4167438 chr3R_4167025_4167379;chr3R_4167438_4167608 2.53 0.00 0.00 4.84 0.00 5.56 5.41 9.62 6.82 NA 0.00 4.84 4.00 5.26 0.00 6.56 9.09 0.00 2.94 2.04 0.00 0.00 0.00 7.41 0.00 5.00 0.00 NA 0.00 0.00 4.44 4.44 10.87 9.52 6.25 4.65 5.56 0.00 0.00 2.00 7.32 3.12 0.00 0.00 0.00 2.53 0.00 2.27 4.65 9.09 0.00 0.00 0.00 2.94 5.00 2.56 1.79 0.00 N jcn_only_AA Aats-val,I_chr2R_9088330_9088393,I_chr2R_9088412_9088502 chr2R + chr2R_9088330_9088517;chr2R_9088330_9088502 chr2R_9088330_9088393 chr2R_9088312_9088329;chr2R_9088518_9088602 0.00 0.00 0.67 1.17 0.69 0.00 0.36 0.52 0.38 0.64 0.00 0.00 0.00 0.00 0.00 0.75 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.32 0.31 3.17 0.00 1.18 0.73 0.00 0.00 0.00 0.00 0.56 0.00 0.78 1.15 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.67 0.00 0.00 0.36 0.00 0.00 0.53 0.63 0.48 0.00 0.98 K alternative_acceptor I_chr3R_22696095_22697413,Rb97D chr3R - chr3R_22699721_22699792 chr3R_22699739_22699792 chr3R_22699793_22700512;chr3R_22699582_22699720 45.45 47.37 23.81 46.88 50.00 37.50 37.93 40.00 45.45 48.15 NA 39.39 50.00 NA 31.58 53.33 55.56 23.53 53.33 44.90 29.41 47.83 45.95 42.42 38.10 40.00 53.85 76.47 60.00 44.44 NA 50.00 50.00 34.38 46.67 15.38 35.71 53.85 44.12 43.24 NA 39.47 36.36 66.67 54.17 38.89 35.48 62.50 57.58 47.83 51.72 56.25 50.00 45.45 45.00 42.86 60.87 41.18 K intron_retention I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_927233_927699,RI_chr4_927771_929704,CG32021,RI_chr4_928180_928245,RI_chr4_928193_928245,I_chr4_928482_929704,noncoding_20815,I_chr4_929811_932812 chr4 - chr4_927771_929704 chr4_927770_927771;chr4_929704_929705 chr4_927741_927770;chr4_929705_929804 98.18 98.18 97.14 98.31 92.11 100.00 100.00 90.20 94.55 96.00 100.00 96.70 97.14 97.30 97.83 95.59 94.12 96.88 100.00 97.22 96.88 98.02 98.98 98.84 100.00 97.37 98.28 97.09 100.00 100.00 98.84 100.00 97.18 97.53 96.36 100.00 100.00 96.61 98.85 99.29 100.00 96.59 100.00 99.31 100.00 96.92 100.00 100.00 95.83 96.04 98.95 98.25 100.00 91.30 100.00 98.08 98.18 97.14 K alternative_donor sgg,I_chrX_2528059_2528637,I_chrX_2528131_2535622,RI_chrX_2528212_2535830,I_chrX_2528367_2535622,I_chrX_2528472_2535622,I_chrX_2529065_2563945,I_chrX_2536127_2563666,I_chrX_2563342_2563666,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2528288_2535622;chrX_2528059_2535622 chrX_2528212_2535622 chrX_2535623_2535722;chrX_2528052_2528058 36.03 33.33 35.48 40.48 25.00 40.00 43.24 30.65 29.23 NA 50.00 43.33 18.18 41.38 31.82 33.33 53.33 50.00 36.36 33.33 54.55 14.29 31.82 35.71 71.43 29.41 40.00 NA NA 9.09 36.67 57.14 NA 41.30 36.36 44.44 18.18 33.33 30.00 37.50 NA 41.86 25.00 40.00 NA 45.45 35.71 NA 32.14 NA 38.89 25.00 NA NA 31.25 54.55 27.27 NA K alternative_donor lin chr2R + chr2R_4802509_4802569;chr2R_4802505_4802569 chr2R_4802513_4802569 chr2R_4802570_4805741;chr2R_4802033_4802504 77.78 82.35 84.62 80.00 77.78 100.00 90.91 75.00 75.86 77.78 81.82 77.78 91.67 83.33 70.59 91.67 77.78 77.78 88.89 76.47 64.29 75.00 77.42 80.00 75.00 84.62 64.29 78.95 77.78 80.95 100.00 77.78 70.37 65.22 88.24 81.25 75.00 69.57 78.95 83.87 81.25 80.00 88.89 73.68 86.67 59.09 69.23 75.00 76.19 73.33 80.77 91.67 92.31 69.23 73.68 86.67 80.00 77.78 K intron_retention CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20827158_20827496 chr2L_20827157_20827158;chr2L_20827496_20827497 chr2L_20827119_20827157;chr2L_20827497_20827676 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.18 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2814894 chr2R_2813804_2813977;chr2R_2814097_2814174;chr2R_2814327_2814894 chr2R_2813978_2814096;chr2R_2814175_2814326 chr2R_2813704_2813803;chr2R_2814895_2814994 100.00 100.00 100.00 84.62 100.00 100.00 87.50 100.00 94.12 100.00 100.00 94.74 100.00 100.00 100.00 81.82 100.00 100.00 100.00 94.12 83.33 100.00 100.00 89.47 100.00 100.00 100.00 83.33 88.89 92.86 100.00 90.91 90.91 100.00 100.00 100.00 93.33 100.00 93.75 95.65 100.00 100.00 85.71 100.00 100.00 93.75 91.67 100.00 82.35 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 91.67 K alternative_acceptor ens,I_chr3L_4130719_4131120 chr3L - chr3L_4125061_4125135 chr3L_4125080_4125135 chr3L_4125136_4125500;chr3L_4124919_4125060 87.50 88.14 86.96 86.05 86.67 82.57 84.62 88.30 86.21 90.54 82.29 86.36 90.32 89.89 86.61 84.81 88.17 91.23 89.38 86.19 86.87 88.96 88.38 85.07 83.45 90.48 90.44 87.62 82.61 88.89 87.22 82.00 87.75 87.50 87.18 90.62 90.24 83.74 90.16 83.88 85.19 90.09 87.78 82.19 92.55 86.45 90.40 84.42 86.04 93.94 87.56 88.89 92.86 88.89 86.71 88.07 84.95 83.54 K intron_retention CG9934 chr2L - chr2L_13015039_13015103 chr2L_13015038_13015039;chr2L_13015103_13015104 chr2L_13014926_13015038;chr2L_13015104_13015498 0.00 0.00 0.00 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32486 chr3L - chr3L_3057583_3057640 chr3L_3057582_3057583;chr3L_3057640_3057641 chr3L_3057430_3057582;chr3L_3057641_3057764 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.11 3.70 0.00 0.00 0.00 0.00 0.00 0.00 3.77 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14408 chrX - chrX_14724381_14724465 chrX_14724380_14724381;chrX_14724465_14724466 chrX_14723169_14724380;chrX_14724466_14724533 1.89 NA 6.25 8.33 NA 0.00 6.67 0.00 6.98 6.67 NA 6.67 NA NA 0.00 4.00 NA 0.00 0.00 3.77 0.00 25.00 8.33 0.00 NA 0.00 15.79 NA 0.00 NA 0.00 NA 0.00 3.85 NA 10.00 10.00 NA NA 0.00 6.67 0.00 NA 0.00 10.53 11.76 NA 4.35 0.00 NA 0.00 0.00 NA NA 0.00 5.00 NA 0.00 K intron_retention CG1965,I_chr3R_2902064_2902611 chr3R + chr3R_2894911_2895006 chr3R_2894910_2894911;chr3R_2895006_2895007 chr3R_2894728_2894910;chr3R_2895007_2895660 16.67 25.00 19.05 12.50 21.05 6.67 21.43 20.59 15.38 NA 5.26 23.33 23.53 17.65 13.79 25.00 15.79 5.88 8.33 14.29 20.00 25.00 29.17 10.53 11.11 0.00 8.70 14.29 20.00 8.00 16.13 16.67 26.67 31.82 25.00 11.76 14.29 19.05 23.08 20.51 0.00 18.18 25.00 6.67 NA 0.00 NA 15.79 19.35 12.50 21.74 26.32 NA NA 15.38 12.50 NA 33.33 K alternative_acceptor Vha100-1,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24963246_24963318 chr3R_24963246_24963305 chr3R_24963074_24963245;chr3R_24963319_24963676 100.00 98.72 100.00 100.00 100.00 100.00 98.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.98 100.00 100.00 98.89 97.62 100.00 99.12 100.00 100.00 99.35 100.00 98.67 100.00 100.00 100.00 100.00 100.00 99.31 100.00 100.00 100.00 100.00 99.40 100.00 99.15 100.00 100.00 100.00 100.00 99.02 100.00 100.00 99.11 100.00 100.00 K cassette RhoGAP100F,F_chr3R_27658626_27659118,F_chr3R_27660019_27660096,F_chr3R_27662909_27663491 chr3R + chr3R_27662904_27665601 chr3R_27662904_27663491;chr3R_27663750_27665601 chr3R_27663492_27663749 chr3R_27662888_27662903;chr3R_27665602_27665718 84.52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA 75.00 NA 75.00 83.33 NA NA NA 100.00 NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA 80.00 K intron_retention Ate1 chr2R - chr2R_16143315_16143587 chr2R_16143314_16143315;chr2R_16143587_16143588 chr2R_16143133_16143314;chr2R_16143588_16143613 26.67 23.53 42.86 53.33 46.15 30.77 NA 26.09 20.69 NA NA 26.09 20.00 38.46 33.33 52.63 NA 16.67 23.81 22.73 13.33 55.56 17.50 24.14 43.75 26.32 47.62 23.53 NA NA 46.15 25.00 NA 18.52 26.67 NA 36.36 22.73 26.32 18.52 NA 29.41 NA 36.00 30.77 22.73 33.33 NA 33.33 39.13 17.24 45.45 NA 36.84 20.00 33.33 22.22 45.45 K intron_retention CG9821,I_chr3R_4644986_4645248,I_chr3R_4644986_4645577,I_chr3R_4644986_4645648,I_chr3R_4644986_4646263,RI_chr3R_4644986_4646264,RI_chr3R_4645903_4646033 chr3R - chr3R_4644986_4646033 chr3R_4644985_4644986;chr3R_4646033_4646034 chr3R_4644886_4644985;chr3R_4646034_4646133 35.14 32.65 40.58 42.31 28.57 36.11 45.59 44.65 40.36 27.59 32.14 45.95 37.72 37.25 42.11 45.45 38.64 41.07 43.48 31.90 35.14 30.00 35.19 52.78 38.46 46.75 32.65 26.53 6.67 20.45 38.61 12.50 21.95 44.02 28.21 28.95 36.36 22.73 26.09 28.36 18.52 40.97 55.00 36.84 14.29 33.33 28.57 19.30 43.98 26.09 32.31 29.41 NA NA 42.39 36.84 33.33 31.03 K intron_retention Nedd4,I_chr3L_17532828_17532882,I_chr3L_17532828_17533787,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17532837_17533787 chr3L_17532836_17532837;chr3L_17533787_17533788 chr3L_17532667_17532836;chr3L_17533788_17533887 22.73 NA NA 50.00 NA NA 69.23 NA 21.05 NA NA 22.73 NA NA 20.00 NA NA NA NA 30.77 NA 52.00 8.70 20.00 NA NA 26.67 NA 25.00 27.78 NA NA NA NA 15.38 NA 25.00 NA 19.05 30.00 NA 15.38 NA 17.65 NA NA NA 24.00 0.00 NA NA 13.33 NA NA NA NA NA NA K alternative_acceptor CG5741,I_chr3L_8928033_8928095 chr3L - chr3L_8928033_8928095 chr3L_8928039_8928095 chr3L_8928096_8928195;chr3L_8927933_8928032 93.75 100.00 92.31 95.45 90.91 100.00 95.83 92.86 100.00 100.00 NA 93.33 91.67 92.31 100.00 100.00 90.91 92.86 94.12 100.00 100.00 90.91 85.71 92.86 100.00 85.71 100.00 87.50 96.15 93.33 85.71 NA 95.24 100.00 100.00 100.00 84.21 NA 100.00 100.00 100.00 89.66 90.00 85.71 93.75 92.86 100.00 85.71 96.00 NA 100.00 NA NA NA 88.89 NA 90.91 88.89 K intron_retention eIF4G,I_chr4_948813_950447 chr4 - chr4_950650_950705 chr4_950649_950650;chr4_950705_950706 chr4_950448_950649;chr4_950706_950727 0.00 0.00 0.00 0.97 0.00 0.00 4.67 4.95 2.67 0.00 3.33 7.95 2.70 1.75 0.00 2.06 0.00 0.00 4.44 2.53 8.00 0.00 0.00 7.89 6.06 20.00 15.69 21.15 25.00 0.00 5.13 NA 3.57 0.00 0.00 8.93 0.00 0.00 0.00 0.00 NA 1.12 4.44 0.00 NA 0.00 0.00 0.00 6.12 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 5.00 K intron_retention CG32795,I_chrX_2677459_2682526,I_chrX_2677729_2677799,I_chrX_2679163_2681784 chrX - chrX_2678721_2679032 chrX_2678720_2678721;chrX_2679032_2679033 chrX_2678710_2678720;chrX_2679033_2679162 0.00 NA 0.00 0.00 NA NA NA 0.00 3.23 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA 0.00 NA 2.94 NA 0.00 NA NA NA 5.26 NA 5.56 0.00 K alternative_donor Klp68D chr3L + chr3L_11788772_11788957 chr3L_11788799_11788957 chr3L_11788958_11789721;chr3L_11788723_11788771 92.31 NA NA NA NA NA 90.91 100.00 93.33 NA NA 90.91 NA 87.50 NA 100.00 NA 100.00 NA 90.91 NA 100.00 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 87.50 NA 92.31 NA 87.50 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention CG11837 chr3R + chr3R_24876155_24876218 chr3R_24876154_24876155;chr3R_24876218_24876219 chr3R_24875442_24876154;chr3R_24876219_24876583 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 2.94 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8182451_8183188 chr2L_8182451_8182626;chr2L_8182876_8183188 chr2L_8182627_8182875 chr2L_8182351_8182450;chr2L_8183189_8183563 1.80 1.39 1.32 0.00 1.55 0.67 1.82 0.71 0.68 2.82 0.00 2.25 0.90 0.75 1.10 1.63 1.26 0.78 1.95 2.03 0.88 4.76 1.79 3.08 3.12 2.38 1.64 6.32 5.38 2.97 0.63 3.41 3.53 0.45 1.53 9.09 2.26 1.64 2.96 2.49 3.45 0.71 0.82 1.71 4.00 1.95 2.25 1.88 1.24 1.83 1.90 1.08 4.76 1.14 0.56 2.13 1.80 2.74 K intron_retention hyx,RI_chr3R_4867356_4867447 chr3R + chr3R_4867034_4867192 chr3R_4867033_4867034;chr3R_4867192_4867193 chr3R_4865890_4867033;chr3R_4867193_4867355 0.00 0.00 0.00 1.15 0.00 0.00 0.00 1.12 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 1.75 0.00 1.12 2.04 0.00 0.98 0.00 3.03 0.00 0.00 1.92 0.00 0.00 1.43 0.00 K alternative_acceptor CG5524,I_chr3R_20017846_20017911,I_chr3R_20018643_20018703 chr3R - chr3R_20018643_20018703 chr3R_20018647_20018703 chr3R_20018704_20018803;chr3R_20018543_20018642 100.00 88.89 100.00 100.00 NA 100.00 90.91 93.75 93.75 75.00 NA 100.00 100.00 90.00 100.00 100.00 NA 100.00 100.00 94.74 NA 100.00 92.31 90.00 NA NA 90.91 NA 92.31 90.00 90.00 100.00 92.86 100.00 NA NA 100.00 100.00 100.00 100.00 NA 94.44 100.00 100.00 NA 90.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 92.86 NA NA 100.00 K jcn_only_AD Ucp4A chrX + chrX_17739432_17739522;chrX_17739458_17739522;chrX_17739454_17739522 chrX_17739394_17739522 chrX_17739523_17739558;chrX_17739094_17739393 15.89 19.44 27.59 NA NA NA 10.00 30.43 13.33 NA NA 16.67 NA NA 26.92 47.62 NA 28.57 23.81 9.09 NA NA 10.14 18.60 30.77 NA 13.89 22.22 NA 16.00 37.50 9.68 15.38 13.89 17.02 37.21 15.79 25.00 12.50 15.69 8.00 20.45 4.76 3.85 12.90 11.63 14.29 12.82 16.67 20.69 13.79 21.74 11.11 10.81 19.35 22.92 13.51 NA K alternative_donor CG32000,RI_chr4_153025_153811,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_152914_153811;chr4_152998_153811 chr4_153025_153811 chr4_153812_153855;chr4_152891_152913 9.09 NA 12.50 19.44 NA 8.33 9.30 15.00 4.55 NA NA 7.89 28.57 9.09 NA 12.24 NA NA 9.09 8.11 NA NA NA NA NA NA NA NA 9.09 9.09 NA 0.00 3.70 11.90 NA NA NA NA NA 6.67 NA 8.70 7.14 NA 16.67 NA NA 7.14 10.71 NA NA NA NA NA NA NA NA 4.55 K intron_retention cno,I_chr3R_999718_999986,I_chr3R_999737_999777,I_chr3R_1003608_1005580,noncoding_14652,F_chr3R_1006551_1006778,I_chr3R_1006714_1006778 chr3R - chr3R_1003608_1005580 chr3R_1003607_1003608;chr3R_1005580_1005581 chr3R_1003508_1003607;chr3R_1005581_1005680 100.00 NA NA NA NA NA NA NA 100.00 NA NA 90.00 NA NA NA NA NA NA NA 100.00 NA 78.57 NA NA NA NA NA 100.00 92.31 NA NA NA 100.00 NA NA NA NA NA 100.00 91.67 NA NA NA 88.89 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA K intron_retention Nopp140,I_chr3L_21828330_21828566,I_chr3L_21828986_21829082 chr3L + chr3L_21827321_21827368 chr3L_21827320_21827321;chr3L_21827368_21827369 chr3L_21827273_21827320;chr3L_21827369_21827458 96.49 95.24 94.12 80.00 100.00 86.67 96.43 82.14 90.32 90.91 NA 96.55 92.31 81.25 93.75 86.36 100.00 100.00 85.71 80.95 93.75 100.00 100.00 96.30 100.00 76.92 100.00 100.00 NA NA 94.74 NA 100.00 86.36 100.00 93.75 100.00 100.00 100.00 100.00 NA 94.59 92.31 100.00 100.00 100.00 100.00 NA 89.66 95.45 100.00 100.00 100.00 100.00 85.19 100.00 100.00 NA K alternative_acceptor Sdc,I_chr2R_17286819_17367595,I_chr2R_17324594_17367595 chr2R - chr2R_17367884_17368518;chr2R_17368045_17368518 chr2R_17367862_17368518 chr2R_17368519_17368632;chr2R_17367596_17367861 93.02 NA NA 90.32 NA 100.00 80.95 91.89 90.91 NA NA 92.31 100.00 86.96 NA 93.18 100.00 92.31 95.24 91.30 NA NA NA NA NA 88.24 NA NA 93.33 NA 96.88 NA NA 92.68 NA NA NA NA NA NA 92.86 96.55 100.00 NA NA 100.00 NA 100.00 89.58 NA 83.33 NA NA NA 94.44 NA NA 97.06 K intron_retention LIMK1,CG1824,I_chrX_12488942_12489000 chrX - chrX_12486982_12487039 chrX_12486981_12486982;chrX_12487039_12487040 chrX_12486580_12486981;chrX_12487040_12487645 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 1.54 0.00 0.00 1.64 0.00 3.57 0.00 0.00 0.00 0.00 1.61 2.21 0.00 0.00 1.97 0.00 2.53 0.00 1.08 0.00 1.10 0.00 3.66 2.60 0.00 0.00 0.00 0.00 1.35 1.54 1.08 0.00 0.00 1.68 4.44 0.00 1.90 0.00 0.00 0.00 0.81 1.75 0.96 0.00 0.00 0.00 0.00 1.52 1.80 0.00 K jcn_only_AA CG1240,I_chr3L_2767143_2767236 chr3L + chr3L_2767143_2767236 chr3L_2767143_2767216 chr3L_2767043_2767142;chr3L_2767237_2767336 100.00 99.66 100.00 99.71 99.48 100.00 99.64 99.69 100.00 100.00 99.48 99.57 100.00 100.00 100.00 100.00 99.46 100.00 100.00 99.81 99.60 100.00 100.00 100.00 100.00 99.63 100.00 100.00 99.44 100.00 100.00 100.00 100.00 99.70 100.00 100.00 100.00 99.56 99.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.75 100.00 99.60 99.51 100.00 99.68 99.63 100.00 100.00 100.00 K alternative_donor Nc73EF,I_chr3L_16950628_16951334,I_chr3L_16950952_16952198,I_chr3L_16951588_16952198,I_chr3L_16951626_16952198,I_chr3L_16952138_16952198,I_chr3L_16952985_16955434,I_chr3L_16953768_16954599 chr3L + chr3L_16948643_16952198 chr3L_16948692_16952198 chr3L_16952199_16952207;chr3L_16948635_16948642 8.61 12.50 7.69 10.81 NA 0.00 11.11 14.71 9.52 NA NA 3.39 9.52 12.50 7.41 7.41 7.69 NA 10.00 3.57 14.29 NA NA NA NA NA 40.00 NA NA NA 7.41 NA NA 6.52 NA NA 11.76 NA NA NA NA 5.77 5.56 NA NA NA NA NA 5.56 NA NA 15.38 NA NA 10.00 NA NA 7.14 K intron_retention CG1970,I_chr4_590803_590943,I_chr4_590970_591026,I_chr4_590970_591030 chr4 - chr4_590803_590859 chr4_590802_590803;chr4_590859_590860 chr4_590703_590802;chr4_590860_590969 5.33 5.92 4.17 15.87 5.08 4.14 10.45 5.05 5.41 4.44 7.34 5.98 6.09 5.88 6.29 5.33 5.26 5.63 4.62 4.64 4.17 24.66 5.08 5.63 10.75 11.11 8.76 8.54 10.62 6.82 15.72 3.92 7.01 5.88 6.45 27.08 3.85 4.76 5.31 4.10 12.79 4.53 3.60 5.19 5.00 4.43 2.38 6.86 5.00 6.45 6.28 4.26 3.45 4.27 4.30 5.52 4.22 2.65 K intron_retention RhoGAP71E,I_chr3L_15583097_15589765 chr3L + chr3L_15582377_15582436 chr3L_15582376_15582377;chr3L_15582436_15582437 chr3L_15581999_15582376;chr3L_15582437_15583096 100.00 100.00 95.24 97.06 100.00 100.00 97.44 97.22 98.21 NA 88.89 100.00 94.12 100.00 94.44 100.00 100.00 100.00 100.00 95.83 92.31 95.00 100.00 93.33 100.00 100.00 100.00 92.31 90.91 100.00 95.00 NA 94.12 100.00 100.00 100.00 100.00 100.00 100.00 95.00 90.91 100.00 100.00 100.00 NA 100.00 100.00 93.75 97.14 92.31 100.00 92.31 100.00 100.00 100.00 100.00 NA 100.00 K jcn_only_AD ran,I_chrX_11040449_11042518,I_chrX_11040462_11041873,I_chrX_11040462_11042000 chrX - chrX_11040462_11042000;chrX_11040462_11041873 chrX_11040462_11042518 chrX_11040362_11040461;chrX_11042519_11042618 99.62 99.50 99.91 99.67 99.85 99.87 99.70 99.81 99.71 99.55 100.00 99.88 100.00 99.77 99.91 100.00 99.59 99.67 99.90 99.69 99.89 99.48 99.56 99.68 99.49 99.71 99.62 99.18 98.80 99.39 99.35 98.84 98.96 99.52 99.87 99.02 98.51 99.63 98.97 99.32 99.06 99.73 99.62 99.64 98.82 99.56 99.73 98.32 99.75 99.44 99.53 99.22 99.62 99.67 99.47 99.08 99.61 99.07 K jcn_only_AD CG1578,RI_chrX_11709573_11709680,I_chrX_11709573_11710263,RI_chrX_11709573_11710335,I_chrX_11710380_11710454 chrX - chrX_11709573_11710458;chrX_11709573_11710335;chrX_11709573_11710454;chrX_11709573_11710263 chrX_11709573_11709680 chrX_11709473_11709572;chrX_11710459_11710479 0.00 NA NA NA NA NA NA NA 0.00 NA NA 7.14 NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA 4.76 NA NA NA NA NA 0.00 NA 0.00 3.33 NA 0.00 NA 0.00 NA NA NA 8.33 0.00 NA NA NA NA NA 6.45 NA 0.00 NA K intron_retention Jhebp29,RI_chr2R_20857941_20857992,RI_chr2R_20857941_20858127 chr2R + chr2R_20858072_20858127 chr2R_20858071_20858072;chr2R_20858127_20858128 chr2R_20857995_20858071;chr2R_20858128_20858227 1.64 1.09 0.00 1.67 2.17 0.00 0.00 0.74 1.66 0.00 1.20 4.44 2.86 4.41 2.11 0.00 3.12 2.78 0.00 1.38 0.00 9.76 0.00 3.12 0.00 6.67 3.85 1.33 8.16 0.00 0.00 1.20 4.76 3.42 0.00 3.08 3.70 2.06 1.75 1.23 0.00 2.53 0.00 0.00 1.18 0.00 1.80 2.70 2.88 1.64 1.52 0.00 0.00 6.35 3.03 1.69 0.00 2.00 K alternative_acceptor Irbp chr3R + chr3R_7236841_7236963 chr3R_7236841_7236941 chr3R_7236778_7236840;chr3R_7236964_7238112 100.00 95.24 100.00 100.00 90.91 100.00 100.00 95.45 97.30 95.00 94.74 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 94.12 96.77 100.00 100.00 100.00 100.00 96.15 100.00 96.55 94.44 100.00 97.22 100.00 100.00 98.33 96.97 100.00 100.00 97.56 100.00 100.00 100.00 100.00 97.06 97.30 97.14 95.24 100.00 96.55 100.00 96.00 93.18 96.88 K alternative_acceptor Ca-P60A,I_chr2R_19817636_19817680,I_chr2R_19820338_19823289 chr2R - chr2R_19814705_19816836 chr2R_19815266_19816836 chr2R_19816837_19816954;chr2R_19814681_19814704 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD sax,CG1882 chr2R + chr2R_3700498_3700785;chr2R_3700197_3700785 chr2R_3700238_3700785 chr2R_3700786_3702250;chr2R_3700011_3700196 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.79 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 1.00 0.00 0.00 0.00 2.41 0.97 1.59 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG8468 chr2R + chr2R_10107616_10108112;chr2R_10107651_10108112;chr2R_10107548_10108112 chr2R_10107621_10108112 chr2R_10108113_10108270;chr2R_10107405_10107547 5.41 4.08 7.64 6.28 2.25 7.97 10.96 5.11 7.89 2.08 4.35 10.60 11.57 5.19 4.32 7.36 4.51 6.47 8.29 5.85 8.26 4.48 7.00 6.30 8.22 6.35 5.41 2.41 7.14 1.56 5.35 2.78 3.33 7.84 4.70 7.21 5.83 5.26 2.73 4.90 12.69 5.02 4.72 6.67 2.22 1.37 7.04 5.45 7.37 11.84 3.36 4.23 2.27 4.94 7.61 3.82 5.68 0.68 K intron_retention CdGAPr chr2L - chr2L_19791342_19791763 chr2L_19791341_19791342;chr2L_19791763_19791764 chr2L_19791270_19791341;chr2L_19791764_19791863 42.93 NA NA NA NA NA 77.78 NA 41.67 NA NA 31.03 NA NA NA 45.45 NA NA NA 35.00 NA 43.75 50.00 NA NA 72.73 41.67 NA 58.33 NA NA NA NA NA NA 33.33 NA NA NA 42.11 NA 46.15 NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Pi3K21B,I_chr2L_301774_302025,I_chr2L_301945_302025 chr2L + chr2L_301945_302025;chr2L_301774_302025 chr2L_299919_302025 chr2L_302026_302125;chr2L_299033_299918 96.30 98.00 95.65 96.12 97.62 98.08 96.55 97.17 98.20 95.31 98.15 96.09 98.75 100.00 98.08 95.83 93.18 97.18 96.30 99.30 95.00 91.86 98.18 96.67 92.86 93.44 91.76 91.76 94.83 96.30 97.22 94.29 98.28 99.06 88.37 93.88 97.00 91.55 90.91 98.41 96.55 99.24 100.00 96.39 NA 97.37 95.83 100.00 100.00 95.00 93.24 94.44 95.65 100.00 94.25 96.30 NA 95.83 K intron_retention scrib,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22416440_22420497 chr3R_22416439_22416440;chr3R_22420497_22420498 chr3R_22416340_22416439;chr3R_22420498_22420566 4.17 2.78 5.88 3.92 0.00 5.71 11.76 6.35 6.48 0.00 11.90 4.69 7.32 4.00 5.56 4.92 4.55 5.13 10.53 5.13 6.06 3.39 2.06 2.25 5.00 5.00 2.11 3.70 4.88 4.17 4.55 4.65 6.56 3.95 7.55 7.41 3.19 2.94 5.26 3.42 2.86 6.03 0.00 3.95 0.00 3.85 1.67 7.61 5.88 2.44 2.22 3.77 0.00 0.00 1.72 3.28 0.00 6.94 K alternative_donor CG3760,CG3770,CG12851 chr2R + chr2R_20826197_20826282 chr2R_20826218_20826282 chr2R_20826283_20826365;chr2R_20825910_20826196 0.47 0.65 1.02 1.48 0.00 0.79 0.00 0.69 0.47 0.00 0.00 0.53 0.00 0.00 1.94 0.00 0.00 0.00 0.00 1.72 0.00 4.60 1.35 0.63 0.00 1.83 2.80 0.00 3.85 0.00 2.73 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.62 1.54 2.42 0.43 0.00 0.00 0.53 1.09 0.00 0.00 0.86 0.47 0.00 0.00 1.25 1.32 0.00 0.68 0.56 0.97 K intron_retention MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17399683_17399897 chr2R_17399682_17399683;chr2R_17399897_17399898 chr2R_17399598_17399682;chr2R_17399898_17400098 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG6762,I_chrX_17751392_17751520 chrX + chrX_17751684_17752084 chrX_17751683_17751684;chrX_17752084_17752085 chrX_17751536_17751683;chrX_17752085_17752451 2.22 0.00 5.00 14.81 0.00 12.50 0.00 8.00 0.00 NA 5.26 12.90 NA NA 0.00 0.00 0.00 0.00 NA 6.67 0.00 10.00 0.00 0.00 7.41 0.00 10.53 10.26 0.00 0.00 12.50 0.00 6.67 8.00 0.00 8.00 6.67 9.38 0.00 2.78 0.00 14.81 NA 0.00 0.00 2.50 0.00 7.14 9.38 2.22 2.44 0.00 0.00 0.00 5.00 0.00 5.26 NA N alternative_donor CG8051,I_chrX_19198128_19201351 chrX - chrX_19198128_19199330;chrX_19198128_19199326 chrX_19198128_19201671 chrX_19198028_19198127;chrX_19201672_19201734 66.67 80.00 66.67 66.67 80.00 50.00 73.33 55.56 66.67 50.00 90.00 70.59 60.00 75.00 40.00 75.00 85.71 80.00 70.00 66.67 50.00 50.00 70.00 50.00 71.43 66.67 20.00 75.00 57.14 75.00 83.33 50.00 55.56 61.54 66.67 66.67 62.50 66.67 71.43 68.75 80.00 33.33 87.50 33.33 50.00 70.00 80.00 50.00 66.67 33.33 66.67 50.00 88.89 80.00 75.00 66.67 50.00 82.35 K jcn_only_AD Btk29A,I_chr2L_8262681_8277370,I_chr2L_8298341_8298782,I_chr2L_8298341_8300884 chr2L - chr2L_8298341_8300714;chr2L_8298341_8300505 chr2L_8298341_8300817 chr2L_8298241_8298340;chr2L_8300818_8301040 11.32 5.56 10.26 13.13 2.78 13.89 13.95 19.74 9.92 8.08 19.30 18.03 16.36 11.76 22.03 23.29 10.87 8.57 9.62 8.20 11.36 7.41 9.89 10.34 11.32 15.56 10.39 19.61 10.32 10.99 9.09 10.42 6.06 11.94 9.76 7.69 7.20 10.53 13.79 10.57 11.67 20.69 18.75 7.94 5.88 11.11 13.21 9.09 17.78 13.56 16.88 25.00 12.50 29.03 25.37 12.50 20.83 9.41 N intron_retention SmG chrX - chrX_16534047_16534125 chrX_16534046_16534047;chrX_16534125_16534126 chrX_16533995_16534046;chrX_16534126_16534194 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 73.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG16965,CG34163,escl chr2L + chr2L_11988330_11988386 chr2L_11988330_11988383 chr2L_11988313_11988329;chr2L_11988387_11988801 100.00 NA 90.00 100.00 100.00 NA 88.89 100.00 100.00 NA 100.00 88.89 92.86 92.86 100.00 90.91 100.00 90.00 94.12 100.00 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 95.00 100.00 NA NA NA NA NA 96.30 NA NA NA NA NA 100.00 NA NA 100.00 K intron_retention CG6498,EI_chr3L_15559245_15561305,chr3L_15559614_15559828.0,I_chr3L_15561224_15561305 chr3L + chr3L_15559254_15561305 chr3L_15559253_15559254;chr3L_15561305_15561306 chr3L_15559179_15559253;chr3L_15561306_15561405 9.52 11.11 0.00 0.00 0.00 18.75 0.00 11.76 9.52 NA 0.00 10.00 0.00 NA NA 7.69 5.56 NA 7.14 5.26 0.00 11.76 13.64 8.33 25.00 NA 18.52 18.18 36.84 15.38 0.00 NA 15.00 12.50 NA 3.85 19.35 7.41 0.00 13.79 NA 15.38 15.38 30.77 NA NA NA 26.32 4.17 NA 4.55 NA NA NA 6.25 NA NA NA K jcn_only_AA rap,I_chrX_4570139_4570286 chrX - chrX_4568653_4570286 chrX_4570139_4570286 chrX_4570287_4570386;chrX_4568400_4568652 1.06 0.00 4.00 0.00 5.00 0.00 0.00 0.00 0.00 3.23 NA 0.00 3.85 0.00 0.00 2.13 2.94 0.00 9.09 3.57 7.14 0.00 0.00 8.11 0.00 0.00 5.88 NA NA 0.00 0.00 4.00 3.12 0.00 0.00 3.12 2.99 0.00 0.00 3.85 3.57 0.00 0.00 2.50 3.57 5.56 0.00 3.12 3.12 0.00 0.00 3.85 0.00 0.00 4.17 2.33 4.00 2.38 K alternative_donor Ca-P60A,RI_chr2R_19820338_19820541,I_chr2R_19820338_19821424,CEI_chr2R_19820338_19821830,I_chr2R_19820338_19823289 chr2R - chr2R_19820338_19820817;chr2R_19820338_19820955;chr2R_19820338_19820781 chr2R_19820338_19820765 chr2R_19820238_19820337;chr2R_19820956_19820969 10.28 10.64 10.07 10.19 7.87 12.12 12.26 10.62 8.01 12.09 8.16 9.52 15.49 9.16 7.38 12.50 7.00 8.26 9.66 8.89 10.19 11.43 14.37 8.11 7.23 10.78 18.42 13.16 15.46 9.52 7.04 12.28 10.58 11.11 14.46 10.34 8.26 14.06 9.43 10.18 7.89 10.28 7.62 8.59 10.77 11.22 10.26 12.21 12.11 11.48 12.90 16.67 10.14 8.33 10.49 10.94 9.59 7.56 K jcn_only_AA CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042888_5042983;chr2L_5042935_5042983 chr2L_5042891_5042983 chr2L_5042984_5043016;chr2L_5042835_5042887 82.77 NA NA 72.73 NA NA 69.57 NA 87.10 NA NA 67.65 NA NA NA 84.00 NA NA 90.91 88.46 NA NA NA NA NA NA NA NA 75.00 NA NA NA 86.36 81.82 NA NA NA NA NA 83.72 NA NA NA NA NA 89.29 NA 59.09 74.29 NA NA NA NA NA 71.43 NA NA 86.96 K alternative_acceptor 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5987603_5991760,I_chr2R_5988662_5991760,I_chr2R_5988666_5991760,I_chr2R_5988919_5991760,I_chr2R_5988931_5991760,I_chr2R_5990647_5991760,I_chr2R_5991249_5991760,I_chr2R_5991689_5991760,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5987244_5991764 chr2R_5987244_5991760 chr2R_5987238_5987243;chr2R_5991765_5991860 100.00 100.00 100.00 99.17 100.00 98.04 98.59 99.26 100.00 100.00 97.67 99.19 100.00 100.00 100.00 100.00 100.00 98.57 98.86 99.40 98.39 100.00 100.00 100.00 100.00 100.00 100.00 NA 93.33 100.00 100.00 100.00 100.00 99.21 NA NA 100.00 100.00 100.00 100.00 100.00 99.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K jcn_only_AD Pak,RI_chr3R_2181143_2181934 chr3R + chr3R_2176677_2180635 chr3R_2177074_2180635 chr3R_2180636_2180902;chr3R_2176656_2176676 66.67 59.38 64.10 28.21 51.52 50.00 74.42 67.92 43.33 58.82 53.19 46.97 66.67 64.29 59.09 66.67 52.00 72.22 56.25 50.70 68.42 NA 71.67 63.64 68.57 68.63 69.44 NA 59.46 82.61 65.52 NA 69.23 57.35 87.10 80.00 62.07 69.81 70.21 72.15 79.31 48.08 67.74 70.45 46.34 89.47 71.43 75.44 49.41 53.57 85.11 52.78 76.92 86.36 66.00 67.74 54.29 71.43 K intron_retention Fas1,I_chr3R_12460976_12461267 chr3R + chr3R_12451065_12451690 chr3R_12451064_12451065;chr3R_12451690_12451691 chr3R_12451036_12451064;chr3R_12451691_12451938 14.29 NA NA NA NA NA NA NA 17.65 NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA K intron_retention CG30020,I_chr2R_6778098_6778140 chr2R + chr2R_6778765_6778915 chr2R_6778764_6778765;chr2R_6778915_6778916 chr2R_6778492_6778764;chr2R_6778916_6779822 94.44 96.00 95.00 95.74 90.48 100.00 100.00 97.56 91.07 85.71 92.31 100.00 93.75 100.00 88.00 96.67 100.00 94.44 90.91 94.55 89.47 96.30 93.75 93.75 92.00 96.43 93.10 93.33 80.95 90.91 100.00 94.74 69.57 97.56 90.00 100.00 97.14 100.00 87.50 86.11 100.00 97.62 92.86 100.00 84.62 89.47 100.00 75.00 97.37 96.67 93.94 94.12 88.89 100.00 100.00 88.89 95.00 76.47 K jcn_only_AA l(3)82Fd,I_chr3R_1147660_1148709 chr3R - chr3R_1120578_1121362 chr3R_1120602_1121362 chr3R_1121363_1121517;chr3R_1120028_1120577 78.12 77.50 73.81 91.03 66.67 75.00 58.75 84.47 82.89 76.32 72.73 84.62 86.89 88.46 70.41 78.12 78.79 79.10 81.36 79.83 73.44 84.47 76.98 75.53 89.47 80.26 80.52 97.62 76.09 75.00 80.56 84.21 76.19 76.77 70.21 91.30 79.23 72.46 77.88 87.30 80.56 81.65 65.96 88.75 69.57 83.67 70.67 82.22 76.32 68.42 86.60 76.06 72.22 73.91 80.53 82.35 60.61 60.47 K intron_retention l(3)02640 chr3L + chr3L_1337541_1337602 chr3L_1337540_1337541;chr3L_1337602_1337603 chr3L_1337271_1337540;chr3L_1337603_1339450 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1416,I_chr2L_21758100_21758179,I_chr2L_21758143_21758183,I_chr2L_21758143_21758209 chr2L + chr2L_21758100_21758201 chr2L_21758099_21758100;chr2L_21758201_21758202 chr2L_21758043_21758099;chr2L_21758202_21758279 100.00 100.00 99.16 100.00 98.55 100.00 100.00 100.00 100.00 100.00 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.96 98.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.01 99.33 100.00 99.12 100.00 99.11 99.07 100.00 100.00 100.00 99.31 100.00 99.57 99.17 100.00 100.00 99.36 100.00 99.25 100.00 99.15 100.00 100.00 98.25 100.00 100.00 100.00 99.44 99.41 K intron_retention squ,grp,CG33552,E_chr2L_16685727_16690952,I_chr2L_16690153_16690901,I_chr2L_16690752_16690901,I_chr2L_16690809_16690901,I_chr2L_16697644_16698961,R_chr2L_16698072_16698138 chr2L + chr2L_16680277_16680449 chr2L_16680276_16680277;chr2L_16680449_16680450 chr2L_16680076_16680276;chr2L_16680450_16680650 43.66 NA NA NA NA NA 41.18 NA 46.15 NA 37.50 NA NA NA NA NA NA NA NA 53.85 35.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 55.56 NA 53.85 NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA K jcn_only_AA CG7158 chr3L - chr3L_21668049_21668121;chr3L_21668076_21668121 chr3L_21668063_21668121 chr3L_21668122_21668273;chr3L_21667494_21668048 100.00 97.73 95.35 97.83 100.00 100.00 100.00 97.62 98.53 NA 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 94.34 97.87 97.62 97.22 98.15 100.00 100.00 96.15 97.92 96.55 100.00 100.00 100.00 100.00 98.51 100.00 96.36 100.00 100.00 100.00 96.43 100.00 100.00 97.62 97.30 100.00 98.39 92.59 100.00 100.00 100.00 100.00 100.00 100.00 98.44 100.00 K multi_cassette DCAP,E_chr2R_6159586_6174578,I_chr2R_6162362_6166803,I_chr2R_6163353_6166716,I_chr2R_6163353_6166727,I_chr2R_6164310_6172914,I_chr2R_6172307_6179999,I_chr2R_6178643_6181126,RI_chr2R_6183553_6192101,I_chr2R_6188094_6192101 chr2R + chr2R_6159586_6182116 chr2R_6159586_6179999;chr2R_6180378_6180845;chr2R_6180945_6181126;chr2R_6181267_6181365;chr2R_6181439_6182116 chr2R_6180000_6180377;chr2R_6180846_6180944;chr2R_6181127_6181266;chr2R_6181366_6181438 chr2R_6159486_6159585;chr2R_6182117_6182270 100.00 85.71 100.00 NA 100.00 75.00 66.67 83.33 100.00 100.00 100.00 100.00 75.00 100.00 71.43 100.00 100.00 75.00 85.71 100.00 100.00 100.00 100.00 87.50 100.00 100.00 75.00 33.33 100.00 80.00 100.00 100.00 66.67 87.50 100.00 100.00 85.71 100.00 85.71 90.00 100.00 90.91 50.00 100.00 100.00 100.00 100.00 100.00 87.50 80.00 100.00 75.00 100.00 75.00 85.71 100.00 100.00 100.00 K alternative_donor rin,I_chr3R_9476825_9476895 chr3R + chr3R_9472992_9473104;chr3R_9472923_9473104 chr3R_9473004_9473104 chr3R_9473105_9473268;chr3R_9472709_9472922 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.38 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.46 0.00 2.17 0.00 NA 0.00 0.00 0.53 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG17683,I_chr2R_18774_18869,I_chr2R_19002_19060 chr2R + chr2R_18998_19060 chr2R_18997_18998;chr2R_19060_19061 chr2R_18902_18997;chr2R_19061_19124 100.00 97.44 96.43 100.00 100.00 100.00 98.18 97.96 98.61 100.00 100.00 100.00 93.94 96.97 100.00 100.00 96.88 96.30 96.97 100.00 100.00 100.00 97.96 100.00 100.00 100.00 98.41 96.67 100.00 100.00 96.43 100.00 94.44 100.00 100.00 100.00 97.62 100.00 100.00 97.92 100.00 98.00 96.55 96.97 100.00 96.43 97.06 100.00 98.48 100.00 97.62 100.00 100.00 100.00 100.00 96.67 100.00 100.00 K intron_retention Bzd chrX - chrX_2502137_2502203 chrX_2502136_2502137;chrX_2502203_2502204 chrX_2502003_2502136;chrX_2502204_2502445 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 2.63 4.76 6.67 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 N multi_cassette Ect4,I_chr3L_8075556_8086158,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8092637_8099115 chr3L_8092637_8095992;chr3L_8097919_8097979;chr3L_8098160_8098226;chr3L_8098397_8098539;chr3L_8098758_8099115 chr3L_8095993_8097918;chr3L_8097980_8098159;chr3L_8098227_8098396;chr3L_8098540_8098757 chr3L_8092246_8092636;chr3L_8099116_8100029 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention rin,I_chr3R_9476825_9476895 chr3R + chr3R_9476782_9476895 chr3R_9476781_9476782;chr3R_9476895_9476896 chr3R_9476725_9476781;chr3R_9476896_9476995 0.57 0.00 0.56 1.05 0.00 1.40 0.00 0.00 0.65 0.00 0.00 0.57 0.00 0.68 0.00 2.20 0.00 0.56 0.61 1.19 0.00 0.58 0.00 0.45 1.40 0.00 2.53 0.00 0.00 0.47 2.01 0.00 0.73 1.43 0.00 0.70 0.62 1.59 0.41 1.29 2.11 1.18 3.79 1.03 0.00 3.12 0.00 2.29 1.26 0.00 0.83 0.75 0.00 1.48 0.51 0.68 0.00 0.00 K intron_retention CG17446,c11_1 chrX - chrX_9165888_9165948 chrX_9165887_9165888;chrX_9165948_9165949 chrX_9164651_9165887;chrX_9165949_9166636 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Treh,I_chr2R_16972565_16972702,I_chr2R_16975359_16975442,RI_chr2R_16975359_16975842,I_chr2R_16975364_16975842 chr2R + chr2R_16974918_16975285 chr2R_16974917_16974918;chr2R_16975285_16975286 chr2R_16974615_16974917;chr2R_16975286_16975358 4.82 0.00 2.70 5.06 0.00 5.13 3.61 5.88 7.87 4.17 0.00 5.97 0.00 2.56 5.77 10.00 2.70 0.00 5.00 0.99 0.00 0.00 12.12 6.06 5.56 0.00 12.82 3.85 0.00 0.00 0.00 7.69 8.00 10.00 0.00 0.00 6.12 8.33 6.25 6.67 0.00 4.82 0.00 0.00 0.00 12.12 7.69 13.64 5.06 8.89 9.38 0.00 0.00 8.00 6.12 0.00 16.67 0.00 K intron_retention lbm chr2R + chr2R_2937471_2937538 chr2R_2937470_2937471;chr2R_2937538_2937539 chr2R_2937275_2937470;chr2R_2937539_2937608 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 1.72 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 14.29 5.88 0.00 NA 0.00 0.00 0.00 0.00 0.00 4.08 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 K intron_retention CG9153,Myo61F chr3L + chr3L_1313909_1313974 chr3L_1313908_1313909;chr3L_1313974_1313975 chr3L_1313840_1313908;chr3L_1313975_1314090 76.92 68.85 78.33 88.89 76.74 81.58 77.01 76.64 79.26 57.14 86.54 79.27 80.77 81.63 75.81 77.32 83.33 75.51 83.64 77.23 83.72 36.49 81.25 75.44 84.62 91.11 80.00 82.35 90.20 64.52 76.39 69.57 43.40 78.72 70.73 97.50 66.67 73.17 68.18 68.42 76.92 75.00 74.47 73.42 70.00 67.27 75.56 73.85 77.00 80.00 77.59 75.61 71.05 84.62 77.03 78.26 75.76 57.89 K intron_retention Ser,I_chr3R_23013597_23017227 chr3R - chr3R_23014187_23017227 chr3R_23014186_23014187;chr3R_23017227_23017228 chr3R_23014069_23014186;chr3R_23017228_23017327 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA 4.76 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 4.55 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA K jcn_only_AA CG8184,I_chrX_15620707_15620769 chrX + chrX_15609611_15609693 chrX_15609611_15609690 chrX_15609339_15609610;chrX_15609694_15610187 43.97 46.55 44.44 31.48 51.43 69.57 40.91 46.48 46.30 38.30 30.56 45.26 46.15 42.86 34.92 37.84 42.22 42.11 42.11 31.67 41.67 41.67 44.00 44.16 48.65 50.94 46.43 41.67 42.50 39.71 47.37 NA 39.66 37.33 46.43 36.84 45.22 37.50 45.16 50.00 NA 50.57 46.15 43.94 NA 45.45 NA 46.77 50.00 NA 43.16 39.47 55.56 NA 40.68 NA NA NA K intron_retention CG6838,I_chr3L_22709306_22709668 chr3L - chr3L_22709515_22709668 chr3L_22709514_22709515;chr3L_22709668_22709669 chr3L_22709407_22709514;chr3L_22709669_22709768 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 3.12 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 2.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CycT,I_chr3L_17548631_17550687 chr3L - chr3L_17547979_17548034 chr3L_17547978_17547979;chr3L_17548034_17548035 chr3L_17546389_17547978;chr3L_17548035_17548630 0.00 0.00 0.00 1.61 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 5.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261460_265805 chr4_261460_263113;chr4_263306_263891;chr4_264212_264259;chr4_264375_265805 chr4_263114_263305;chr4_263892_264211;chr4_264260_264374 chr4_261360_261459;chr4_265806_265905 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette yrt chr3R - chr3R_9255492_9256644 chr3R_9255492_9255819;chr3R_9256473_9256644 chr3R_9255820_9256472 chr3R_9254589_9255491;chr3R_9256645_9256811 95.24 97.06 96.55 97.83 100.00 96.15 90.00 90.91 93.75 96.43 95.24 94.55 91.30 94.74 96.43 96.77 100.00 91.67 92.00 98.53 95.45 97.83 98.31 90.74 96.88 96.30 90.91 96.43 91.67 97.44 91.30 93.75 94.83 92.00 92.86 100.00 94.92 100.00 94.92 91.04 91.43 97.06 95.65 97.56 89.09 92.00 100.00 93.88 88.14 95.74 95.56 96.00 96.77 89.74 93.75 97.22 94.44 89.47 K jcn_only_AA CG4996,E_chr2R_13627553_13627643,I_chr2R_13629549_13629609 chr2R + chr2R_13629549_13629609 chr2R_13629549_13629605 chr2R_13629449_13629548;chr2R_13629610_13629709 96.88 95.24 92.59 100.00 95.00 NA 95.12 92.86 98.04 NA 95.83 96.88 NA NA 100.00 97.62 NA 96.15 100.00 98.63 NA 97.06 96.67 87.50 NA 100.00 96.30 100.00 100.00 91.30 87.50 96.15 96.88 94.44 NA 100.00 100.00 NA 94.59 100.00 100.00 96.08 88.46 95.83 NA 100.00 NA 100.00 97.67 100.00 100.00 NA NA NA 89.66 NA NA NA K intron_retention bol,I_chr3L_9095908_9105733,RI_chr3L_9117011_9118271 chr3L - chr3L_9105888_9106145 chr3L_9105887_9105888;chr3L_9106145_9106146 chr3L_9105734_9105887;chr3L_9106146_9106358 48.48 37.50 41.67 30.77 46.15 50.00 30.77 59.09 44.74 NA 42.86 42.42 66.67 71.43 52.38 57.14 37.50 66.67 76.47 61.76 53.33 NA 35.29 25.00 NA 70.00 NA NA NA NA 71.43 NA NA 48.48 15.38 NA 26.32 NA 31.58 20.00 NA 58.06 46.15 29.41 NA NA 66.67 16.67 52.00 57.14 NA NA NA NA 70.59 54.55 NA NA K jcn_only_AD klett chrX - chrX_21497918_21501000 chrX_21497918_21499387 chrX_21497340_21497917;chrX_21501001_21501058 98.67 100.00 100.00 96.83 100.00 98.67 100.00 98.37 100.00 100.00 100.00 98.09 98.73 100.00 100.00 97.94 100.00 96.00 100.00 99.38 100.00 94.94 97.98 100.00 100.00 100.00 100.00 96.77 94.23 98.72 95.65 95.56 96.10 99.27 97.80 99.01 99.05 98.33 97.92 97.60 98.18 98.36 98.18 96.91 97.40 100.00 97.92 94.87 100.00 97.53 98.36 100.00 100.00 94.12 97.50 100.00 100.00 97.65 K jcn_only_AA I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545686_17545855 chr2R_17545686_17545850 chr2R_17545628_17545685;chr2R_17545856_17545985 95.24 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.48 100.00 NA K intron_retention mub,RI_chr3L_21901021_21901163,I_chr3L_21908756_21909179 chr3L + chr3L_21914088_21914153 chr3L_21914087_21914088;chr3L_21914153_21914154 chr3L_21914067_21914087;chr3L_21914154_21914427 95.45 93.33 100.00 96.15 95.45 95.65 100.00 95.24 96.55 93.75 100.00 100.00 100.00 93.33 95.45 94.44 92.86 100.00 NA 95.65 100.00 95.00 95.35 94.44 96.30 95.65 96.15 91.67 100.00 91.30 93.33 90.00 93.33 96.30 95.00 100.00 95.74 96.55 89.47 94.59 92.86 100.00 100.00 94.44 94.12 95.00 95.24 90.00 97.14 100.00 96.30 95.45 90.91 95.00 95.83 95.00 94.44 100.00 K intron_retention CG1542 chr3R + chr3R_27039332_27039393 chr3R_27039331_27039332;chr3R_27039393_27039394 chr3R_27039132_27039331;chr3R_27039394_27039477 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 4.40 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RhoGAP15B chrX + chrX_16837932_16842886 chrX_16837931_16837932;chrX_16842886_16842887 chrX_16837390_16837931;chrX_16842887_16843484 0.00 0.00 0.00 0.00 0.00 0.00 7.41 8.70 11.48 0.00 0.00 3.85 0.00 6.67 6.06 0.00 7.69 0.00 4.65 0.00 4.00 0.00 2.56 0.00 0.00 0.00 0.00 NA 0.00 8.00 0.00 NA 0.00 5.26 0.00 0.00 0.00 0.00 0.00 8.33 NA 4.55 3.45 0.00 NA 0.00 NA 0.00 8.00 NA 3.23 0.00 NA NA 8.33 NA 0.00 0.00 K cassette Nf1 chr3R + chr3R_21817568_21818529 chr3R_21817568_21818121;chr3R_21818212_21818529 chr3R_21818122_21818211 chr3R_21817472_21817567;chr3R_21818530_21818535 100.00 93.75 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 95.65 100.00 90.00 92.31 100.00 100.00 100.00 100.00 92.31 100.00 100.00 91.67 100.00 100.00 NA 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 88.89 N cassette ire-1,FI_chr3R_15689914_15690042 chr3R - chr3R_15683407_15686607 chr3R_15683407_15686368;chr3R_15686484_15686607 chr3R_15686369_15686483 chr3R_15682963_15683406;chr3R_15686608_15687013 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention RpL22,noncoding_21234,snoRNA:Psi18S-531,snoRNA:Psi28S-2179 chrX - chrX_657025_658334 chrX_657024_657025;chrX_658334_658335 chrX_656593_657024;chrX_658335_658556 0.34 0.41 0.34 0.47 0.47 0.37 0.78 0.26 0.26 0.49 0.42 0.30 0.47 0.43 0.38 0.25 0.32 0.33 0.40 0.43 0.52 0.55 0.24 0.41 0.37 0.58 0.30 2.33 0.11 0.16 0.38 0.26 0.34 0.34 0.28 0.30 0.30 0.45 0.30 0.45 0.28 0.42 0.36 0.30 0.40 0.27 0.22 0.13 0.47 0.51 0.33 0.27 0.38 0.29 0.34 0.32 0.43 0.27 K alternative_acceptor spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20336405_20336469;chr2L_20336405_20336463 chr2L_20336405_20336466 chr2L_20336338_20336404;chr2L_20336470_20336529 73.68 62.86 77.27 64.44 75.00 78.79 79.63 73.68 68.83 80.77 75.86 71.93 73.08 76.00 72.97 75.00 74.19 72.22 69.23 75.81 72.00 68.50 67.27 80.85 79.17 76.47 76.74 64.91 70.69 79.17 71.21 71.43 67.24 70.00 64.86 78.38 76.00 64.52 70.00 73.91 70.00 74.07 75.86 76.79 78.85 80.39 72.97 71.88 71.43 71.70 77.27 62.96 85.19 78.79 68.75 72.97 75.00 75.86 K jcn_only_AA CG13784,I_chr2L_7209439_7209522,I_chr2L_7219131_7219918 chr2L - chr2L_7209439_7209522 chr2L_7209463_7209522 chr2L_7209523_7209622;chr2L_7209373_7209438 100.00 97.44 100.00 97.62 100.00 100.00 98.44 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 97.14 100.00 100.00 100.00 100.00 96.30 100.00 97.37 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 97.22 100.00 100.00 98.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA PyK,CG7069,CG18596,I_chr3R_18203637_18203690,I_chr3R_18209085_18209133 chr3R + chr3R_18193391_18194506;chr3R_18193391_18194501;chr3R_18193391_18196485 chr3R_18193391_18196509 chr3R_18193322_18193390 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG2943 chr3R - chr3R_3730719_3730772 chr3R_3730718_3730719;chr3R_3730772_3730773 chr3R_3730557_3730718;chr3R_3730773_3731107 1.71 2.80 2.44 2.86 0.00 1.96 2.99 1.22 1.69 0.00 0.83 0.99 0.00 3.09 0.00 0.57 0.00 4.13 0.00 2.66 4.72 0.00 2.16 1.77 2.35 2.84 2.61 0.00 0.00 0.00 1.71 0.00 2.35 2.42 3.64 5.13 3.45 0.00 0.91 0.86 0.00 1.42 0.00 2.11 0.00 3.85 2.70 0.00 2.28 3.85 0.00 3.09 2.22 1.54 0.72 4.35 2.92 0.00 K alternative_acceptor Hyperkinetic,I_chrX_10148341_10149525,I_chrX_10152994_10153223 chrX - chrX_10135052_10135146 chrX_10135055_10135146 chrX_10135147_10135201;chrX_10134987_10135051 73.13 92.31 88.89 80.00 66.67 NA 79.07 69.57 75.00 86.96 NA 57.14 NA NA 54.55 70.00 NA NA NA 81.82 NA 79.17 71.43 70.59 86.67 66.67 75.00 90.91 60.00 66.67 78.57 NA 71.43 75.00 54.55 66.67 73.53 68.75 84.62 81.82 71.43 81.25 NA 75.00 75.00 57.14 75.00 55.56 66.67 69.23 64.00 77.78 NA 72.73 91.67 53.33 63.64 75.00 K jcn_only_AD I_chr2R_17169674_17170491,CG10069,I_chr2R_17169897_17170495,I_chr2R_17170432_17170491,I_chr2R_17171765_17171886 chr2R + chr2R_17170432_17170491;chr2R_17169885_17170491;chr2R_17170070_17170491;chr2R_17169897_17170491 chr2R_17170336_17170491 chr2R_17170492_17170591;chr2R_17169869_17169884 9.09 11.48 9.52 15.89 17.19 8.43 13.16 10.31 12.40 4.88 10.00 6.34 10.77 6.25 10.34 14.43 7.69 7.02 18.64 11.31 19.44 11.03 12.38 8.25 6.25 10.53 6.02 7.55 13.64 4.17 11.76 7.94 9.01 9.09 6.06 7.69 6.20 2.35 3.33 10.58 10.61 8.89 9.43 12.00 16.42 5.63 3.23 6.16 13.04 9.43 3.92 3.85 7.81 8.82 12.66 5.66 8.62 12.26 K alternative_donor MSBP,I_chrX_15783766_15784027,RI_chrX_15783766_15784064,I_chrX_15783766_15785978 chrX - chrX_15783766_15784027;chrX_15783766_15783941 chrX_15783766_15784064 chrX_15783666_15783765;chrX_15784065_15784071 1.75 0.00 0.00 1.11 4.35 2.08 1.37 2.50 2.86 3.03 0.00 0.83 1.92 1.56 5.80 4.84 1.37 5.56 4.11 4.46 1.54 6.25 2.25 0.00 2.44 1.75 1.41 0.00 0.00 1.69 0.00 2.63 3.85 0.85 0.00 0.00 1.69 0.00 2.22 0.00 0.00 5.98 6.90 0.00 2.63 1.27 1.41 1.92 3.20 2.50 2.78 2.33 2.33 0.00 3.90 7.41 0.00 0.00 K intron_retention ens,I_chr3L_4130719_4131120 chr3L - chr3L_4129792_4130388 chr3L_4129791_4129792;chr3L_4130388_4130389 chr3L_4129651_4129791;chr3L_4130389_4130643 90.00 NA NA 91.67 NA NA NA NA NA NA NA 67.86 NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 87.50 NA NA NA NA NA 92.86 88.89 NA NA NA NA NA NA NA NA NA K alternative_donor CG34408,I_chrX_10120689_10121004 chrX + chrX_10120689_10121435 chrX_10121023_10121435 chrX_10121436_10121990;chrX_10120589_10120688 0.00 0.00 0.00 0.00 0.00 0.00 3.45 3.70 2.78 0.00 0.00 2.94 6.67 0.00 0.00 6.67 NA 0.00 10.00 0.00 0.00 0.00 2.94 0.00 8.33 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention chb,noncoding_13909 chr3L + chr3L_21175380_21176170 chr3L_21175379_21175380;chr3L_21176170_21176171 chr3L_21174779_21175379;chr3L_21176171_21176324 100.00 98.59 100.00 98.68 100.00 100.00 100.00 100.00 99.16 100.00 100.00 98.90 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.91 100.00 100.00 100.00 100.00 98.31 98.73 100.00 K intron_retention RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817 chr2R + chr2R_15329995_15330122 chr2R_15329994_15329995;chr2R_15330122_15330123 chr2R_15329948_15329994;chr2R_15330123_15330245 0.41 0.41 0.48 0.24 0.00 0.24 1.55 0.22 0.25 0.30 0.69 0.23 1.01 0.56 0.61 0.41 1.31 0.68 1.01 0.18 0.61 0.48 0.29 0.41 0.64 1.53 0.90 0.39 1.13 0.51 2.86 0.53 0.27 0.29 0.20 0.51 0.18 0.44 0.29 0.31 1.22 0.23 0.00 0.40 0.24 0.40 0.28 0.47 0.46 0.54 0.47 0.38 0.20 0.24 0.64 0.37 0.29 0.31 K multi_cassette pyd,I_chr3R_4654041_4664113,I_chr3R_4749124_4756437 chr3R - chr3R_4654041_4664113 chr3R_4654041_4657863;chr3R_4657997_4658075;chr3R_4658368_4658425;chr3R_4658667_4659696;chr3R_4659797_4659860;chr3R_4660010_4660078;chr3R_4660672_4660998;chr3R_4661233_4664113 chr3R_4657864_4657996;chr3R_4658076_4658367;chr3R_4658426_4658666;chr3R_4659697_4659796;chr3R_4659861_4660009;chr3R_4660079_4660671;chr3R_4660999_4661232 chr3R_4653941_4654040;chr3R_4664114_4664213 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention vap,RI_chrX_15897976_15899352,I_chrX_15897976_15899654,I_chrX_15898011_15899654,I_chrX_15898427_15899017,RI_chrX_15898427_15899654,RI_chrX_15899237_15899352,I_chrX_15899237_15899654 chrX - chrX_15898478_15899654 chrX_15898477_15898478;chrX_15899654_15899655 chrX_15898466_15898477;chrX_15899655_15899705 59.41 NA NA NA NA NA 56.25 55.56 76.92 NA NA 29.41 NA 60.00 NA 64.00 NA NA 66.67 69.23 NA NA NA NA NA NA NA NA NA NA 53.33 NA 88.89 58.82 NA 100.00 NA NA NA NA NA 54.17 NA NA NA NA NA NA 52.38 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG12576,RI_chrX_21878289_21882347,I_chrX_21882735_21882809,I_chrX_21882735_21883407,I_chrX_21882735_21883467,I_chrX_21882735_21883620,I_chrX_21882735_21883714 chrX - chrX_21882735_21882809;chrX_21882735_21883714;chrX_21882735_21883750 chrX_21882735_21883467 chrX_21882635_21882734;chrX_21883751_21883814 0.00 1.14 0.00 0.66 0.00 0.00 0.00 0.55 0.45 0.00 0.00 3.08 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.42 0.00 0.78 0.00 0.00 0.00 1.39 0.00 0.00 0.96 0.97 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 2.86 0.72 1.41 1.68 0.00 0.86 1.23 0.00 0.57 1.85 1.12 1.56 0.00 0.00 0.00 0.00 1.49 1.11 K intron_retention pcx,fs(1)K10 chrX + chrX_2130038_2130100 chrX_2130037_2130038;chrX_2130100_2130101 chrX_2129612_2130037;chrX_2130101_2131465 100.00 100.00 100.00 98.81 100.00 97.92 100.00 100.00 99.21 100.00 97.83 100.00 97.96 100.00 100.00 100.00 100.00 97.92 100.00 99.04 95.56 98.72 98.80 100.00 98.41 100.00 98.73 94.55 100.00 97.83 100.00 97.14 98.31 98.82 98.18 98.04 100.00 100.00 100.00 100.00 100.00 98.99 97.37 100.00 100.00 100.00 100.00 100.00 100.00 97.73 98.82 98.00 96.67 100.00 98.63 100.00 95.45 97.22 K alternative_acceptor CG40351 chr3LHet + chr3LHet_594526_594779;chr3LHet_594526_594756 chr3LHet_594526_594765 chr3LHet_594511_594525;chr3LHet_594780_595060 52.27 NA NA 50.00 NA NA NA NA 54.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention tou,I_chr2R_7468394_7468453,RI_chr2R_7474644_7475275,I_chr2R_7479681_7491857,I_chr2R_7504956_7505020 chr2R - chr2R_7468904_7470519 chr2R_7468903_7468904;chr2R_7470519_7470520 chr2R_7468454_7468903;chr2R_7470520_7474530 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 7.41 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5664,RI_chr3L_21432841_21432888 chr3L - chr3L_21433555_21433612 chr3L_21433554_21433555;chr3L_21433612_21433613 chr3L_21432889_21433554;chr3L_21433613_21434472 16.59 NA NA 14.29 NA NA 8.33 NA 17.39 7.14 NA 0.00 NA NA NA 28.57 NA NA NA 18.75 NA 17.39 15.79 0.00 NA NA 17.65 20.00 9.52 18.75 25.00 30.77 28.57 0.00 NA NA 7.14 0.00 0.00 14.29 NA 9.52 NA 5.26 27.27 25.00 NA NA 23.53 NA 22.73 NA NA NA NA NA NA NA K intron_retention RpS7,E_chr3R_26032339_26034298,I_chr3R_26034115_26034211,I_chr3R_26034118_26034211 chr3R - chr3R_26034148_26034211 chr3R_26034147_26034148;chr3R_26034211_26034212 chr3R_26033815_26034147;chr3R_26034212_26034311 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.07 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 K jcn_only_AA cwo,noncoding_15870,chr3R_6215619_6216520.0,chr3R_6216827_6217291.0,chr3R_6217556_6219555.0,chr3R_6219984_6221958.0 chr3R + chr3R_6215160_6222418;chr3R_6215160_6222423 chr3R_6215160_6222426 chr3R_6214846_6215159;chr3R_6222427_6222542 0.00 4.35 NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA 10.00 NA NA NA 7.14 NA 1.92 2.04 0.00 NA NA 3.70 NA 0.00 0.00 NA NA 0.00 3.45 0.00 0.00 0.00 4.00 4.35 4.88 7.69 3.85 NA 4.55 NA NA NA 0.00 0.00 2.70 0.00 0.00 NA NA 0.00 NA NA 1.92 K jcn_only_AD RpL3,I_chr3R_7047694_7047896,I_chr3R_7047774_7047896,E_chr3R_7047964_7050565,I_chr3R_7049970_7050189 chr3R + chr3R_7047774_7047896;chr3R_7047655_7047896 chr3R_7047694_7047896 chr3R_7047897_7047963;chr3R_7047619_7047654 0.00 0.00 0.02 0.00 0.00 0.03 0.03 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.14 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 K jcn_only_AD CG1970,I_chr4_590803_590943,I_chr4_590970_591026,I_chr4_590970_591030 chr4 - chr4_590970_591026;chr4_590970_591034 chr4_590970_591030 chr4_590944_590969;chr4_591035_591043 0.61 0.00 0.00 0.65 1.51 0.00 0.41 0.27 0.40 0.00 0.00 0.48 1.08 1.03 1.12 0.35 0.00 0.42 1.83 0.00 0.00 0.00 0.95 0.86 0.72 0.58 1.54 0.57 1.62 0.00 2.36 0.85 0.91 0.30 0.66 2.20 0.45 0.93 0.61 1.00 0.47 0.51 0.00 0.51 0.86 0.79 1.19 1.76 0.24 1.39 0.61 0.99 0.00 1.26 0.97 0.36 0.36 0.65 K intron_retention CG3529 chr3L + chr3L_9442925_9443117 chr3L_9442924_9442925;chr3L_9443117_9443118 chr3L_9442789_9442924;chr3L_9443118_9443168 0.00 0.00 0.00 5.56 NA 6.67 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA NA NA 2.86 NA 0.00 1.89 2.04 0.00 NA 0.00 3.12 0.00 NA NA NA 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 NA 0.00 0.00 0.00 5.41 0.00 0.00 0.00 5.26 0.00 0.00 0.00 NA 0.00 0.00 NA K intron_retention sgg,I_chrX_2529065_2563945,I_chrX_2536127_2563666,I_chrX_2555127_2563666,I_chrX_2561695_2562135,I_chrX_2563342_2563666,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2555127_2563945 chrX_2555126_2555127;chrX_2563945_2563946 chrX_2555119_2555126;chrX_2563946_2564045 0.00 0.00 0.00 4.44 NA 4.00 7.41 0.00 0.00 NA 0.00 4.17 NA 0.00 0.00 0.00 0.00 9.52 6.25 5.13 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 4.17 3.70 0.00 10.53 0.00 0.00 0.00 3.23 0.00 0.00 2.94 3.92 0.00 4.08 0.00 0.00 0.00 3.85 0.00 0.00 2.13 0.00 0.00 0.00 NA 0.00 6.25 0.00 0.00 0.00 K jcn_only_AA ATPsyn-Cf6,I_chr3R_19181508_19181563,I_chr3R_19181524_19181702 chr3R - chr3R_19181508_19181702 chr3R_19181524_19181702 chr3R_19181703_19181733;chr3R_19181424_19181507 0.00 0.00 0.16 0.00 0.00 0.00 0.16 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.13 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.53 0.00 0.00 0.00 0.34 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 K jcn_only_AA Doa,I_chr3R_24715823_24718923,I_chr3R_24747391_24747896 chr3R + chr3R_24713971_24714030 chr3R_24713971_24714027 chr3R_24713819_24713970;chr3R_24714031_24714256 4.45 8.70 8.00 7.69 NA NA NA 3.85 6.25 NA NA 0.00 NA NA 0.00 2.38 NA NA 13.04 9.76 NA 18.18 5.00 4.35 NA NA NA NA NA NA 4.35 NA NA NA NA NA 10.00 0.00 3.85 4.35 NA 6.67 NA 0.00 NA 0.00 3.70 4.55 7.69 NA 3.12 NA 6.90 NA 3.23 9.52 NA NA K cassette CG13384 chr2L + chr2L_8384896_8386216 chr2L_8384896_8385002;chr2L_8385098_8386216 chr2L_8385003_8385097 chr2L_8384754_8384895;chr2L_8386217_8386384 99.45 98.64 100.00 99.45 99.31 97.81 99.59 99.63 100.00 96.25 99.31 99.58 99.24 99.27 100.00 99.46 100.00 99.25 99.41 100.00 100.00 100.00 99.54 99.45 100.00 99.25 98.40 98.92 94.94 98.53 99.38 100.00 96.97 100.00 99.20 99.16 99.45 99.29 98.77 99.35 100.00 99.67 98.57 100.00 100.00 99.26 100.00 97.98 99.61 97.67 99.50 100.00 100.00 98.95 99.46 100.00 99.28 100.00 K intron_retention CG5844 chr3R + chr3R_8260068_8260138 chr3R_8260067_8260068;chr3R_8260138_8260139 chr3R_8259962_8260067;chr3R_8260139_8260924 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 4.65 0.00 0.00 2.08 4.55 0.00 0.00 2.70 2.13 0.00 0.00 0.00 6.56 0.00 0.00 0.00 6.15 0.00 2.44 0.00 0.00 3.45 2.90 0.00 0.00 6.12 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 3.16 3.57 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 K intron_retention CG18659,E_chr2R_5011363_5019110,RI_chr2R_5013572_5014531,I_chr2R_5016147_5016997 chr2R - chr2R_5011645_5012248 chr2R_5011644_5011645;chr2R_5012248_5012249 chr2R_5011194_5011644;chr2R_5012249_5012725 90.91 88.89 87.50 82.61 85.71 91.67 95.83 100.00 87.50 92.86 91.67 80.65 78.57 64.29 76.47 NA 100.00 100.00 90.00 86.11 84.62 93.88 82.93 89.29 90.91 90.91 96.15 94.74 92.86 86.36 92.31 94.74 85.19 85.19 95.24 93.33 93.94 93.75 94.74 86.84 88.46 90.62 NA 100.00 85.00 96.00 95.45 100.00 88.24 86.36 81.25 90.91 78.57 84.21 91.67 95.45 84.21 92.31 K intron_retention CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2439831_2442435 chr3L_2439830_2439831;chr3L_2442435_2442436 chr3L_2439731_2439830;chr3L_2442436_2442689 0.00 0.00 0.00 2.63 0.00 0.00 6.67 4.17 3.08 0.00 0.00 0.00 0.00 0.00 0.00 4.76 4.55 0.00 0.00 3.57 0.00 1.41 0.00 4.44 0.00 0.00 9.30 6.52 0.00 1.96 11.76 0.00 2.94 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 4.55 4.17 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 K jcn_only_AA lap,I_chr3R_3017854_3019314 chr3R + chr3R_3017854_3018261 chr3R_3017854_3018213 chr3R_3017754_3017853;chr3R_3018262_3018376 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Hrb98DE,RI_chr3R_24429041_24431183,snoRNA:Psi28S-3305c,RI_chr3R_24430202_24430258 chr3R + chr3R_24429041_24429782 chr3R_24429040_24429041;chr3R_24429782_24429783 chr3R_24428941_24429040;chr3R_24429783_24429985 90.45 NA NA 100.00 NA NA 90.00 100.00 93.75 NA NA 95.00 56.25 NA NA 100.00 NA NA NA 91.67 NA 90.00 70.00 NA NA NA NA 90.91 14.55 NA NA NA 66.67 90.91 NA 100.00 90.91 NA NA 63.64 41.67 90.00 NA NA NA 90.91 NA 63.16 94.12 NA NA NA 77.78 NA NA NA NA 75.00 K jcn_only_AD Rab35 chrX - chrX_20052303_20052928 chrX_20052303_20052371 chrX_20052003_20052302;chrX_20052929_20053057 5.00 4.86 2.56 2.49 3.51 6.25 8.29 2.54 3.00 6.61 2.68 2.99 5.93 4.03 5.81 2.34 3.12 5.00 2.21 2.95 2.88 14.43 3.46 5.86 8.20 1.74 6.67 5.51 13.55 4.49 6.88 7.01 9.52 4.15 2.56 1.85 4.95 10.73 10.11 8.85 8.57 4.45 2.86 10.32 9.31 5.05 10.70 6.37 2.99 8.42 9.69 5.00 1.16 5.35 3.80 5.21 3.94 2.63 K alternative_acceptor Fur2,RI_chrX_16267905_16268958,I_chrX_16270205_16270272,I_chrX_16274795_16274867 chrX + chrX_16274795_16274867 chrX_16274795_16274859 chrX_16274695_16274794;chrX_16274868_16274967 98.70 100.00 98.08 98.70 100.00 97.62 100.00 98.90 99.35 100.00 100.00 95.12 97.92 100.00 98.25 97.01 100.00 96.15 100.00 99.37 100.00 98.18 98.48 98.18 100.00 98.04 100.00 100.00 100.00 98.04 97.83 97.56 98.57 100.00 100.00 97.83 98.80 97.73 100.00 98.18 96.97 97.27 100.00 98.15 98.04 97.78 100.00 100.00 98.98 98.04 100.00 100.00 97.37 100.00 97.18 98.39 98.51 100.00 K intron_retention CaMKII,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,I_chr4_1071489_1071884,RI_chr4_1071489_1071968,I_chr4_1071569_1071884,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1071489_1071884 chr4_1071488_1071489;chr4_1071884_1071885 chr4_1071469_1071488;chr4_1071885_1071899 100.00 95.24 100.00 100.00 NA 100.00 97.22 97.56 100.00 NA NA 97.56 100.00 95.24 100.00 97.56 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 95.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 95.24 100.00 100.00 100.00 K alternative_donor RpL17,I_chrX_6637182_6638207,RI_chrX_6637182_6637528,I_chrX_6637182_6637973,snoRNA:Psi28S-1232 chrX - chrX_6637182_6638178;chrX_6637182_6638228;chrX_6637182_6638141 chrX_6637182_6637982 chrX_6637093_6637181;chrX_6638229_6638235 3.77 5.71 5.00 7.41 4.08 2.56 6.67 3.77 4.29 2.27 8.82 3.28 5.41 6.25 6.67 6.06 0.00 4.35 2.56 4.55 8.33 0.86 5.56 7.32 8.82 6.38 4.65 3.70 2.15 1.14 4.17 1.83 0.00 2.22 3.92 3.77 3.12 3.57 1.85 1.26 1.94 4.44 7.69 1.85 1.15 1.32 1.85 1.75 7.55 2.04 3.33 4.76 0.67 2.70 6.00 5.56 2.30 0.58 K intron_retention Aats-pro chr3L - chr3L_2651281_2651341 chr3L_2651280_2651281;chr3L_2651341_2651342 chr3L_2651213_2651280;chr3L_2651342_2651593 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 2.38 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 3.70 10.00 0.00 NA 0.00 3.70 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 16.67 0.00 0.00 2.86 NA 0.00 NA 0.00 NA NA 0.00 0.00 5.56 K jcn_only_AD CG12753,CG14894,RI_chr3R_12268071_12268135,RI_chr3R_12268071_12268141,RI_chr3R_12268071_12268661,Pak3 chr3R - chr3R_12268071_12268661;chr3R_12268071_12268124;chr3R_12268071_12268141;chr3R_12268071_12268135 chr3R_12268071_12268145 chr3R_12267971_12268070;chr3R_12268662_12268688 1.57 2.50 1.35 1.33 0.00 1.67 0.00 0.00 1.56 0.00 6.38 1.85 0.00 0.00 5.19 1.64 1.85 1.59 1.59 1.77 3.70 0.00 1.33 2.75 0.00 0.00 6.06 7.14 1.64 1.79 2.22 0.00 3.30 1.02 1.64 10.42 1.43 1.32 0.00 0.81 1.15 1.57 2.27 2.86 0.00 1.69 0.95 0.00 2.24 0.00 3.53 1.47 0.00 3.57 1.23 2.02 2.66 0.74 K intron_retention Dlic chrX + chrX_11056046_11056118 chrX_11056045_11056046;chrX_11056118_11056119 chrX_11055816_11056045;chrX_11056119_11056230 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA RpL13A,I_chr3R_1450243_1451235,EI_chr3R_1450853_1451054,snoRNA:Me28S-U2134b chr3R + chr3R_1450853_1451235;chr3R_1450853_1451134 chr3R_1450853_1451054 chr3R_1450753_1450852;chr3R_1451236_1451335 0.07 0.07 0.05 0.05 0.12 0.10 0.17 0.04 0.04 0.13 0.09 0.05 0.09 0.13 0.07 0.08 0.09 0.02 0.07 0.07 0.03 0.02 0.08 0.08 0.11 0.07 0.13 0.24 0.15 0.04 0.09 0.06 0.07 0.06 0.09 0.18 0.06 0.04 0.04 0.07 0.22 0.07 0.06 0.10 0.04 0.12 0.07 0.09 0.14 0.12 0.14 0.05 0.05 0.12 0.09 0.06 0.07 0.09 K jcn_only_AA I_chr3R_17191403_17191730,noncoding_18164 chr3R + chr3R_17191403_17191730 chr3R_17191403_17191725 chr3R_17191372_17191402;chr3R_17191731_17191830 90.00 NA NA NA NA NA 93.33 NA 86.96 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N jcn_only_AA JhI-26,I_chr2R_12177114_12177266 chr2R + chr2R_12178257_12178432;chr2R_12178257_12178348 chr2R_12178257_12178308 chr2R_12177457_12178256;chr2R_12178433_12178520 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mus205 chr2R + chr2R_3682228_3682285 chr2R_3682227_3682228;chr2R_3682285_3682286 chr2R_3681980_3682227;chr2R_3682286_3682730 13.33 NA NA NA NA NA 22.73 NA 10.00 NA NA 16.67 NA NA NA NA NA NA NA 3.57 NA 56.67 13.33 NA 13.33 30.77 22.73 8.70 25.93 14.29 13.33 NA 11.76 0.00 NA 31.58 15.38 NA 26.67 12.00 11.76 12.50 NA 12.50 NA 7.69 NA 27.78 5.00 NA 13.04 NA NA NA 13.33 NA NA NA K alternative_acceptor CG4699 chr3R + chr3R_11624127_11624445 chr3R_11624127_11624442 chr3R_11623809_11624126;chr3R_11624446_11624758 68.16 57.14 61.54 72.73 60.00 87.50 81.82 81.25 72.00 69.23 75.00 62.50 NA 80.00 61.11 76.92 NA 88.89 63.64 67.57 70.00 71.43 78.79 62.96 68.75 50.00 73.08 65.71 51.72 65.62 71.43 76.47 57.14 73.68 66.67 50.00 72.73 64.71 79.31 78.95 71.43 56.25 NA 72.00 44.00 52.63 66.67 57.14 81.82 66.67 75.00 87.50 60.87 61.54 54.55 66.67 69.23 46.88 K intron_retention Hrb98DE,RI_chr3R_24429041_24431183,snoRNA:Psi28S-3305c,RI_chr3R_24430202_24430258 chr3R + chr3R_24429041_24431183 chr3R_24429040_24429041;chr3R_24431183_24431184 chr3R_24428941_24429040;chr3R_24431184_24431283 100.00 NA NA 100.00 NA NA NA 90.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 NA 90.91 90.91 100.00 NA NA 100.00 100.00 83.33 100.00 NA NA 100.00 NA 90.91 100.00 100.00 NA NA 100.00 100.00 100.00 NA 88.89 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA NA 100.00 97.06 K jcn_only_AA CG8485,I_chr2R_10126696_10126750 chr2R - chr2R_10126690_10126955 chr2R_10126696_10126955 chr2R_10126956_10127190;chr2R_10126596_10126689 98.46 100.00 96.88 98.46 97.37 100.00 97.10 98.46 97.65 97.22 100.00 98.95 100.00 97.14 97.83 98.39 92.31 100.00 100.00 99.16 94.92 98.61 99.06 98.65 97.10 100.00 96.23 100.00 100.00 100.00 100.00 96.15 98.06 98.44 98.77 98.68 98.73 96.72 97.62 97.33 100.00 97.89 97.62 100.00 100.00 100.00 97.56 98.55 98.78 100.00 96.81 97.14 96.97 97.92 92.31 100.00 92.68 100.00 K intron_retention CG6191 chr2R - chr2R_9469372_9470303 chr2R_9469371_9469372;chr2R_9470303_9470304 chr2R_9469254_9469371;chr2R_9470304_9470452 0.00 0.00 3.57 0.00 0.00 2.33 1.43 2.74 1.00 0.00 3.57 1.32 5.26 0.00 2.22 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 1.92 0.00 0.00 6.52 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention cryptocephal,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21312044_21318126 chr2L_21312043_21312044;chr2L_21318126_21318127 chr2L_21311984_21312043;chr2L_21318127_21318416 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 24.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Nopp140,I_chr3L_21828330_21828566,I_chr3L_21828986_21829082 chr3L + chr3L_21828330_21829082 chr3L_21828329_21828330;chr3L_21829082_21829083 chr3L_21828248_21828329;chr3L_21829083_21829182 54.95 47.06 51.22 58.33 61.29 59.18 56.00 63.93 58.82 56.90 60.53 56.03 67.50 51.06 57.14 65.57 60.98 60.00 63.27 56.41 65.85 64.44 44.79 48.68 38.89 63.04 48.65 42.57 54.55 53.19 59.26 55.36 57.73 52.78 48.15 39.71 53.97 51.52 44.59 54.95 45.35 56.60 60.47 59.32 38.57 49.41 44.16 54.84 56.73 56.79 50.00 40.43 35.71 47.62 57.63 48.68 46.96 48.09 K jcn_only_AD I_chr2R_17169674_17170491,CG10069,I_chr2R_17169897_17170495,I_chr2R_17170432_17170491,I_chr2R_17171765_17171886 chr2R + chr2R_17170432_17170491;chr2R_17170336_17170491;chr2R_17169885_17170491;chr2R_17170070_17170491 chr2R_17169897_17170491 chr2R_17170492_17170591;chr2R_17169869_17169884 76.79 70.49 77.38 75.70 71.88 79.52 56.58 62.89 75.21 89.02 65.00 78.87 72.31 75.00 67.82 73.20 72.31 75.44 69.49 76.79 62.50 76.47 73.33 83.51 82.81 73.68 81.93 81.13 80.91 87.50 74.12 84.13 78.38 76.86 80.30 67.69 82.17 82.35 85.00 80.95 75.76 79.26 71.70 76.00 70.15 87.32 87.10 85.62 72.46 73.58 79.41 83.33 79.69 82.35 72.15 77.36 81.03 76.42 K intron_retention Tak1 chrX - chrX_20393848_20394085 chrX_20393847_20393848;chrX_20394085_20394086 chrX_20393532_20393847;chrX_20394086_20394385 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 2.74 3.33 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 1.61 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 1.35 5.80 1.27 0.00 0.00 2.38 0.00 0.00 5.33 0.00 K intron_retention CG3635 chr2L + chr2L_22183467_22183599 chr2L_22183466_22183467;chr2L_22183599_22183600 chr2L_22183394_22183466;chr2L_22183600_22183915 82.69 83.33 68.42 71.88 70.97 77.42 86.59 72.55 80.65 94.74 75.00 75.47 80.00 84.21 79.49 87.50 72.22 62.50 85.71 79.21 75.76 63.01 80.00 89.23 90.24 78.26 84.62 86.49 75.68 85.71 76.72 87.72 78.21 70.18 77.78 95.24 83.56 85.25 86.36 83.74 84.31 70.24 85.71 84.27 78.46 83.17 82.72 90.24 83.78 82.69 86.96 88.57 78.18 84.78 81.82 76.67 81.82 85.96 K intron_retention Tao-1 chrX - chrX_19466647_19466710 chrX_19466646_19466647;chrX_19466710_19466711 chrX_19466530_19466646;chrX_19466711_19466833 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 2.61 0.00 5.08 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD KdelR,CG5188 chr2L + chr2L_10427004_10427075 chr2L_10427009_10427075 chr2L_10427076_10428159;chr2L_10426867_10427003 10.79 11.92 10.14 11.59 11.30 11.11 10.67 12.52 10.98 8.68 11.05 12.62 11.14 13.43 7.28 10.21 11.71 9.38 9.86 10.37 10.74 10.18 13.39 10.09 13.25 10.49 10.46 10.40 8.77 11.11 9.59 9.22 13.59 8.55 10.90 9.97 9.80 8.18 10.09 13.67 13.48 10.93 9.25 13.53 10.79 10.44 11.33 12.06 10.96 11.29 10.96 8.85 15.42 11.65 9.63 10.39 9.26 12.17 K alternative_donor CG5608 chr3R - chr3R_8288525_8288579 chr3R_8288525_8288577 chr3R_8288136_8288524;chr3R_8288580_8288820 94.87 100.00 100.00 93.75 87.50 100.00 91.67 94.74 95.00 NA NA 100.00 NA NA 90.91 94.12 100.00 100.00 100.00 94.74 88.89 100.00 100.00 100.00 87.50 100.00 94.74 NA NA NA 100.00 100.00 NA 94.12 90.00 100.00 NA 100.00 100.00 100.00 NA 94.44 100.00 100.00 100.00 91.67 94.12 NA 93.33 93.75 94.12 90.91 NA 94.74 93.75 94.74 100.00 NA K jcn_only_AD tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5960163;chr3R_5959310_5960101;chr3R_5959310_5960041;chr3R_5959310_5959789;chr3R_5959310_5960049;chr3R_5959310_5960182;chr3R_5959310_5960026;chr3R_5959310_5960158 chr3R_5959310_5959679 chr3R_5958937_5959309;chr3R_5960183_5960224 6.42 8.33 9.38 4.76 4.35 2.86 7.62 10.19 14.88 14.29 4.17 5.19 15.52 5.56 4.26 6.42 2.17 3.45 9.23 5.49 6.45 5.00 9.09 6.90 11.11 6.82 3.45 4.17 6.45 6.06 9.26 NA 6.06 11.58 6.06 9.09 NA NA NA 6.00 4.55 5.49 9.09 8.00 0.00 5.88 NA 3.85 9.68 15.38 5.00 8.70 NA NA 2.44 13.33 NA 8.33 K alternative_acceptor hppy,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15108288_15111557 chr2R_15108288_15110744 chr2R_15108271_15108287;chr2R_15111558_15111891 84.85 84.78 74.07 72.13 68.42 94.12 97.44 74.29 84.27 88.10 92.86 82.61 70.59 81.82 81.25 75.86 76.19 84.62 81.82 75.29 69.57 99.30 95.24 82.86 84.85 77.14 87.27 91.89 85.71 93.75 63.64 88.24 92.92 75.51 85.96 94.57 91.96 87.14 91.18 84.85 86.05 80.00 84.21 90.54 87.50 88.89 83.02 90.24 73.85 89.47 77.46 81.58 88.57 83.33 82.76 91.89 88.57 86.05 K jcn_only_AD CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27044867;chr3R_27044771_27045257;chr3R_27044771_27045132;chr3R_27044771_27045027;chr3R_27044771_27045110;chr3R_27044771_27044831;chr3R_27044771_27044990;chr3R_27044771_27044895 chr3R_27044771_27045188 chr3R_27044671_27044770;chr3R_27045258_27045273 0.18 0.32 0.17 0.19 0.00 0.18 0.00 0.08 0.18 0.00 0.00 0.27 0.24 0.00 0.00 0.00 0.00 0.15 0.27 0.18 0.00 0.00 2.00 3.64 0.00 0.13 0.00 1.19 1.97 1.36 0.13 0.21 0.54 0.00 0.00 1.18 3.95 0.00 3.23 0.00 0.35 0.07 0.00 1.27 0.34 0.00 4.55 0.00 0.15 4.26 0.00 2.08 0.62 3.12 0.00 5.36 1.05 0.24 N alternative_acceptor Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629579_2629913;chr3L_2629613_2629913;chr3L_2629585_2629913;chr3L_2629684_2629913;chr3L_2629527_2629913 chr3L_2629597_2629913 chr3L_2629914_2629921;chr3L_2629427_2629526 6.50 6.50 8.59 11.68 6.94 6.74 11.79 7.82 11.36 8.70 23.42 8.63 12.44 7.83 5.73 8.04 7.01 5.03 6.81 5.53 14.16 0.00 5.48 5.81 7.22 7.16 7.32 7.69 4.17 3.93 6.27 5.79 5.78 9.83 4.96 6.50 4.26 4.83 3.40 4.90 6.98 6.74 7.67 5.10 2.99 3.33 3.23 3.68 6.67 7.41 6.31 6.52 1.90 4.72 7.32 5.77 4.62 2.37 K intron_retention lolal,I_chr2R_14043671_14043736,I_chr2R_14043671_14043740,I_chr2R_14043671_14043901,RI_chr2R_14043671_14044082,I_chr2R_14043671_14044191,I_chr2R_14043671_14044461,I_chr2R_14043671_14045289,I_chr2R_14043671_14045344 chr2R - chr2R_14043671_14043772 chr2R_14043670_14043671;chr2R_14043772_14043773 chr2R_14043571_14043670;chr2R_14043773_14043836 90.00 90.00 NA 100.00 NA NA NA 90.00 91.67 NA NA 92.31 NA 88.89 NA 91.67 90.91 NA 87.50 86.36 70.00 81.82 100.00 NA NA NA NA NA 90.00 NA NA NA 70.00 92.86 NA 87.50 90.91 NA NA 92.31 NA 88.89 87.50 NA NA NA 100.00 NA 92.31 87.50 NA NA NA NA NA 88.89 63.64 NA K cassette AGO3,R_chr3L_23576458_23611569,RE_chr3L_23577095_23611573,R_chr3L_23611740_23627354,RI_chr3L_23673522_23682584 chr3L + chr3L_23576465_23627349 chr3L_23576465_23611573;chr3L_23611740_23627349 chr3L_23611574_23611739 chr3L_23576333_23576464;chr3L_23627350_23627482 96.59 85.71 100.00 95.35 100.00 100.00 95.45 100.00 96.88 NA NA 100.00 NA 88.89 90.00 100.00 88.89 92.86 100.00 100.00 NA NA NA 100.00 NA 81.82 100.00 100.00 NA NA 83.33 NA 100.00 100.00 NA NA NA 80.00 NA 100.00 NA 93.75 100.00 95.00 72.73 100.00 88.89 100.00 96.30 NA 100.00 100.00 92.86 NA 87.50 83.33 95.65 91.67 K intron_retention CG11357,I_chr3L_4542781_4542858,C_chr3L_4563905_4578759 chr3L + chr3L_4542908_4551001 chr3L_4542907_4542908;chr3L_4551001_4551002 chr3L_4542859_4542907;chr3L_4551002_4551938 2.08 1.58 1.32 6.47 1.04 2.08 3.07 2.60 2.47 1.68 3.72 3.62 2.33 1.03 2.01 2.25 1.83 6.36 1.58 1.63 4.31 1.42 1.26 2.86 1.83 1.24 2.90 6.94 7.94 2.52 2.36 2.53 0.00 1.89 1.80 2.15 2.36 2.30 2.99 2.39 0.00 1.62 2.16 1.69 1.19 1.65 2.21 2.86 1.59 1.40 2.08 1.80 1.64 2.04 2.93 2.76 0.96 0.00 K intron_retention slmo,CG34179 chr2L - chr2L_6047781_6047899 chr2L_6047780_6047781;chr2L_6047899_6047900 chr2L_6046654_6047780;chr2L_6047900_6047941 54.17 54.17 43.14 42.50 28.00 48.98 69.23 36.49 36.76 66.67 44.12 48.39 36.36 40.00 45.76 54.05 21.88 35.71 40.91 41.25 45.71 52.50 79.41 65.38 79.17 66.67 90.32 83.72 85.00 76.19 38.75 39.53 52.17 32.47 74.07 80.65 70.00 70.83 78.57 62.90 70.00 31.19 35.29 72.00 31.51 81.58 81.48 67.57 44.94 60.87 63.16 72.22 68.57 84.00 47.37 65.38 82.14 48.21 K intron_retention Src42A chr2R + chr2R_1898843_1898907 chr2R_1898842_1898843;chr2R_1898907_1898908 chr2R_1898676_1898842;chr2R_1898908_1899865 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14164,CG6707 chr3L - chr3L_9887383_9887443 chr3L_9887382_9887383;chr3L_9887443_9887444 chr3L_9886809_9887382;chr3L_9887444_9887632 0.00 NA NA 0.00 NA NA 0.00 9.09 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA 1.30 NA 0.00 NA NA NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 0.00 K alternative_acceptor mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818575_7818853;chr3R_7818597_7818853 chr3R_7818607_7818853 chr3R_7818854_7818892;chr3R_7818507_7818574 43.14 37.50 36.11 36.84 34.38 41.94 62.32 33.82 58.82 52.94 37.50 38.36 43.48 28.21 52.38 43.14 53.33 54.17 38.10 45.33 29.55 53.33 53.12 47.83 40.00 34.48 43.75 54.84 52.94 38.46 39.39 50.00 22.58 35.29 42.11 33.33 72.73 74.07 50.00 35.56 46.15 50.00 47.50 44.83 47.06 31.71 43.48 44.44 34.15 63.64 37.78 50.00 35.71 33.33 39.02 39.29 53.12 25.71 K intron_retention CG15356 chr2L - chr2L_1980181_1980252 chr2L_1980180_1980181;chr2L_1980252_1980253 chr2L_1979910_1980180;chr2L_1980253_1980427 0.00 0.00 0.00 12.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 23.33 0.00 0.00 0.00 8.70 0.00 10.53 3.85 0.00 0.00 NA 5.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 2.63 0.00 NA 0.00 NA NA 0.00 0.00 NA NA 0.00 K intron_retention Psa,I_chr3L_1518053_1518213 chr3L + chr3L_1520764_1521133 chr3L_1520763_1520764;chr3L_1521133_1521134 chr3L_1519947_1520763;chr3L_1521134_1522458 0.00 0.00 0.61 2.50 0.00 0.00 1.10 0.52 0.86 0.00 0.00 0.76 0.00 1.60 0.00 1.49 0.00 1.52 0.00 0.70 0.00 0.00 0.00 0.00 1.80 0.00 0.00 1.95 0.00 1.90 0.00 0.00 0.00 0.52 1.22 0.00 0.43 0.68 0.87 0.60 0.00 0.72 0.91 0.54 0.00 0.00 0.00 0.00 0.39 0.76 1.05 0.00 0.00 0.00 1.64 0.00 0.00 0.00 K intron_retention cnn,I_chr2R_9333096_9336723,I_chr2R_9333096_9336812,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9334834_9336812 chr2R_9334833_9334834;chr2R_9336812_9336813 chr2R_9334744_9334833;chr2R_9336813_9336819 82.72 100.00 NA 82.35 NA 87.50 84.62 76.19 82.50 80.00 60.00 77.27 41.67 85.71 77.78 84.00 NA NA 87.50 74.07 NA 77.50 85.71 78.95 85.71 NA 73.91 87.10 86.21 88.00 77.78 88.89 73.91 76.47 75.00 72.73 84.62 77.78 80.00 93.33 NA 86.67 90.00 82.93 NA 69.57 87.50 86.21 95.00 61.54 93.33 88.24 NA NA 80.00 92.31 NA 77.78 K alternative_acceptor CG31873 chr2L + chr2L_10270395_10270448 chr2L_10270395_10270440 chr2L_10270274_10270394;chr2L_10270449_10271235 0.00 0.00 0.00 4.17 NA 5.00 4.00 0.00 2.38 NA NA 2.22 NA 0.00 0.00 2.86 NA 0.00 0.00 2.70 NA NA 15.00 0.00 NA NA 5.26 0.00 NA 5.00 11.11 5.88 0.00 0.00 NA NA 5.88 0.00 0.00 0.00 4.00 0.00 0.00 0.00 NA 0.00 5.88 4.55 0.00 NA 0.00 NA 0.00 NA 0.00 NA 0.00 2.70 K intron_retention Sec16,I_chrX_12501913_12502010,I_chrX_12502899_12502973 chrX + chrX_12502899_12502970 chrX_12502898_12502899;chrX_12502970_12502971 chrX_12502799_12502898;chrX_12502971_12503669 63.64 NA 58.82 42.86 NA 63.64 66.67 58.82 66.67 53.85 NA 70.59 75.00 75.00 73.33 72.22 NA NA 50.00 50.00 NA NA 66.67 NA NA 92.31 68.18 66.67 65.00 66.67 50.00 64.29 52.38 50.00 53.85 NA NA NA NA 52.00 76.92 66.67 NA 53.33 NA 63.64 NA 56.67 69.57 50.00 60.00 NA NA NA 50.00 46.15 NA 69.57 K alternative_donor CG4572,FI_chr3R_15689914_15690042 chr3R - chr3R_15689914_15689997;chr3R_15689914_15690046 chr3R_15689914_15690042 chr3R_15689814_15689913;chr3R_15690047_15690114 0.00 0.00 0.00 3.00 1.92 1.82 2.54 0.87 1.09 0.00 3.33 3.16 0.00 3.64 1.15 5.00 0.00 0.00 5.13 1.50 0.00 0.00 2.90 1.82 2.33 3.70 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.08 0.00 0.00 0.00 NA 1.50 1.82 0.00 0.00 0.00 0.00 0.00 1.50 0.00 0.00 0.00 3.70 0.00 2.47 2.70 3.75 0.00 K jcn_only_AD SD23414,CG9132,I_chrX_16693612_16694097,I_chrX_16693612_16694529,CG9125,I_chrX_16696492_16696589 chrX - chrX_16693612_16694097;chrX_16693612_16694558 chrX_16693612_16696171 chrX_16693512_16693611;chrX_16696172_16696233 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr2R_2754447_2755071,Spn4,CG9454 chr2R - chr2R_2764032_2764100 chr2R_2764031_2764032;chr2R_2764100_2764101 chr2R_2763778_2764031;chr2R_2764101_2764238 53.57 41.67 50.00 56.41 63.16 72.22 85.19 53.70 55.77 58.82 71.43 54.05 57.14 40.00 53.85 61.76 44.12 56.25 51.72 52.50 56.25 44.00 78.26 50.00 64.29 70.59 41.38 66.67 42.86 60.87 51.22 53.12 46.88 65.91 54.17 84.21 40.91 46.67 52.63 43.48 63.64 56.86 53.57 46.88 36.84 53.06 51.72 60.87 49.12 43.18 43.59 42.11 37.50 41.38 54.84 54.84 55.26 48.61 K alternative_donor RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817 chr2R + chr2R_15329995_15330122 chr2R_15330062_15330122 chr2R_15330123_15330245;chr2R_15329948_15329994 0.30 0.14 0.48 0.24 0.00 0.24 0.63 0.22 0.11 0.30 0.23 0.20 0.34 0.56 0.30 0.21 0.66 1.02 0.51 0.16 0.61 0.42 0.32 0.32 0.45 1.03 0.45 0.08 0.89 0.13 8.42 0.38 0.14 0.17 0.33 0.13 0.12 0.34 0.22 0.27 0.82 0.20 1.21 0.25 0.24 0.49 0.25 0.47 0.38 0.39 0.47 0.24 0.15 0.30 0.32 0.26 0.20 0.44 K jcn_only_AD CG30492,C_chr2R_3522706_3523025,RI_chr2R_3536203_3536977,I_chr2R_3543397_3543455 chr2R + chr2R_3514678_3521720 chr2R_3517834_3521720 chr2R_3521721_3521802 38.71 40.00 53.85 26.09 42.31 54.55 NA 25.58 31.25 NA NA 46.51 41.67 44.44 40.62 13.04 33.33 48.39 23.08 30.65 NA 9.30 40.00 45.95 17.39 42.86 42.42 NA NA 31.82 40.74 25.00 25.00 51.06 NA NA 33.33 NA 50.00 34.62 NA 44.83 NA 27.78 38.71 45.00 48.00 26.67 37.78 NA 26.83 NA NA NA 29.63 45.45 NA 33.33 K intron_retention I_chr2R_19265701_19270570,CG3530,CG3520 chr2R - chr2R_19277772_19277827 chr2R_19277771_19277772;chr2R_19277827_19277828 chr2R_19277529_19277771;chr2R_19277828_19278340 0.00 1.12 0.00 0.00 0.00 0.00 2.35 0.00 1.45 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.26 0.00 4.95 0.00 0.00 0.00 0.00 3.70 4.44 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7192,RI_chrX_17993756_17994097 chrX - chrX_17993256_17993319 chrX_17993255_17993256;chrX_17993319_17993320 chrX_17992901_17993255;chrX_17993320_17993475 0.00 1.92 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 1.27 3.57 0.00 6.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 1.19 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21309092_21309994 chr2L_21309091_21309092;chr2L_21309994_21309995 chr2L_21308992_21309091;chr2L_21309995_21309997 100.00 100.00 100.00 100.00 100.00 NA 92.31 94.74 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 90.00 100.00 90.91 100.00 100.00 100.00 95.83 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA NA 100.00 K intron_retention CG42630,mtTFB1,F_chr3L_11702436_11702598 chr3L + chr3L_11702536_11702598 chr3L_11702535_11702536;chr3L_11702598_11702599 chr3L_11702030_11702535;chr3L_11702599_11702698 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Tsp42Ea,CG30159 chr2R + chr2R_2880561_2880625 chr2R_2880566_2880625 chr2R_2880626_2881652;chr2R_2880504_2880560 22.50 26.53 20.00 27.59 21.74 18.18 25.00 20.00 21.05 26.47 7.14 21.15 41.38 26.92 15.38 26.09 33.33 14.81 11.54 23.61 26.92 12.50 19.57 17.31 NA NA 24.14 19.44 51.85 17.86 20.75 13.64 29.17 25.00 44.83 NA 21.33 32.81 27.66 13.33 NA 27.59 29.17 23.21 24.24 26.32 20.00 34.15 25.93 15.38 17.39 13.89 16.13 33.33 22.50 8.89 18.18 30.95 K intron_retention Rs1,I_chr2R_4056946_4057022 chr2R + chr2R_4054958_4055018 chr2R_4054957_4054958;chr2R_4055018_4055019 chr2R_4054414_4054957;chr2R_4055019_4055317 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG4420,I_chrX_16335942_16337525 chrX + chrX_16335942_16337525 chrX_16336054_16337525 chrX_16337526_16337625;chrX_16335842_16335941 100.00 100.00 99.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.44 100.00 99.38 100.00 100.00 100.00 100.00 100.00 100.00 98.81 100.00 100.00 100.00 100.00 100.00 99.49 99.26 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.51 100.00 98.98 99.33 100.00 100.00 99.03 100.00 100.00 99.08 100.00 K jcn_only_AA CG1815,I_chr3R_27501104_27501167,I_chr3R_27501104_27501176 chr3R + chr3R_27501104_27501179;chr3R_27501104_27501167 chr3R_27501104_27501176 chr3R_27501004_27501103;chr3R_27501180_27501267 49.70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 37.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 61.90 NA NA NA NA NA NA NA NA NA NA N jcn_only_AD None chrU - chrU_7543786_7544888 chrU_7543786_7543849 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.90 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG5001,I_chr2L_1191535_1191648 chr2L + chr2L_1192199_1192267 chr2L_1192199_1192255 chr2L_1191970_1192198;chr2L_1192268_1192625 35.71 40.00 38.10 31.58 35.00 33.33 30.77 47.37 41.46 NA 50.00 33.33 NA 42.86 28.57 35.71 32.00 38.10 40.00 41.94 50.00 50.00 37.50 28.57 NA 33.33 46.67 NA 36.36 30.00 16.67 NA 25.00 26.09 17.65 NA 28.57 23.53 30.00 21.74 36.36 39.13 28.57 42.86 58.33 47.06 30.00 29.41 32.35 35.71 29.17 35.71 28.57 40.00 47.62 44.00 40.00 NA K alternative_donor I_chr3R_19825840_19825904,Miro chr3R - chr3R_19860752_19861009 chr3R_19860752_19860985 chr3R_19860087_19860751;chr3R_19861010_19861048 58.33 64.00 66.67 45.45 57.14 50.00 29.41 52.94 44.83 NA 29.41 61.11 60.00 45.45 66.67 40.00 33.33 66.67 46.15 61.54 75.00 62.50 70.00 51.85 30.00 26.67 58.82 66.67 83.33 56.25 41.67 66.67 42.86 71.43 61.11 60.00 70.83 57.14 59.26 42.42 45.45 54.55 NA 68.75 41.67 59.26 70.00 60.00 68.18 56.25 63.64 52.63 66.67 50.00 58.33 60.00 41.18 35.71 K intron_retention RI_chr3L_4364586_4364659,mRpS6,CG33514 chr3L + chr3L_4364746_4364811 chr3L_4364745_4364746;chr3L_4364811_4364812 chr3L_4364679_4364745;chr3L_4364812_4365272 4.87 NA NA NA NA NA 6.25 NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 6.67 3.45 7.69 0.00 NA 5.56 14.29 55.56 NA NA NA NA NA NA NA 13.04 0.00 0.00 8.70 NA 0.00 NA 0.00 7.69 4.17 0.00 NA NA 9.52 8.33 0.00 18.52 9.09 NA 0.00 10.00 0.00 K jcn_only_AA Trf2,I_chrX_8318346_8318408 chrX + chrX_8303398_8304314 chrX_8303398_8304309 chrX_8303319_8303397;chrX_8304315_8304722 95.24 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.24 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21309092_21309938 chr2L_21309091_21309092;chr2L_21309938_21309939 chr2L_21308992_21309091;chr2L_21309939_21309974 100.00 100.00 100.00 100.00 88.89 100.00 93.75 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 94.12 97.22 100.00 96.15 NA 100.00 NA 95.24 100.00 98.08 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 NA 100.00 K alternative_acceptor eIF-4a,I_chr2L_5985221_5985289 chr2L + chr2L_5985221_5985289;chr2L_5985221_5985342 chr2L_5985221_5985338 chr2L_5985121_5985220;chr2L_5985343_5985389 91.74 91.39 93.64 89.04 92.22 92.38 91.74 91.85 91.10 90.93 93.29 91.48 92.57 90.90 90.10 90.64 91.32 92.56 91.41 93.77 92.99 94.28 91.44 92.39 92.57 91.88 90.13 92.77 83.26 94.64 91.20 91.15 91.55 92.18 92.19 93.64 90.91 92.59 93.61 93.21 91.22 92.27 91.14 91.48 89.52 91.22 93.36 89.66 91.52 92.24 92.01 91.67 91.19 93.07 91.48 92.50 92.84 88.80 K intron_retention wun2,I_chr2R_5304606_5304660 chr2R + chr2R_5304841_5304899 chr2R_5304840_5304841;chr2R_5304899_5304900 chr2R_5304772_5304840;chr2R_5304900_5305073 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 3.26 4.30 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 1.03 0.00 0.00 0.64 0.62 0.00 0.81 0.60 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention TfIIFalpha,I_chr3R_2211939_2212057 chr3R + chr3R_2206342_2206407 chr3R_2206341_2206342;chr3R_2206407_2206408 chr3R_2206080_2206341;chr3R_2206408_2207327 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 10.26 15.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Atg18,I_chr3L_8182683_8182941 chr3L + chr3L_8180294_8180578 chr3L_8180293_8180294;chr3L_8180578_8180579 chr3L_8180118_8180293;chr3L_8180579_8180676 11.02 10.53 12.90 18.52 10.64 14.00 25.40 16.00 11.02 10.71 7.32 13.27 8.33 12.00 12.33 12.12 13.79 18.00 8.33 15.24 5.00 17.70 10.53 9.46 17.86 14.93 14.08 17.50 12.20 7.35 11.39 3.23 5.56 8.43 10.00 34.48 8.89 4.94 11.43 10.87 14.81 9.40 14.29 6.76 6.90 8.51 4.69 7.81 9.17 13.46 13.89 11.76 11.90 9.62 11.76 9.43 8.86 4.48 K cassette CG33523,RI_chr3L_5920177_5921323 chr3L + chr3L_5920167_5921636 chr3L_5920167_5921323;chr3L_5921397_5921636 chr3L_5921324_5921396 chr3L_5920077_5920166;chr3L_5921637_5921740 96.97 92.86 100.00 93.67 100.00 97.44 83.78 97.09 96.75 96.30 97.06 96.55 100.00 95.56 94.74 98.61 94.34 97.73 98.36 98.91 97.44 88.00 96.88 93.33 97.06 92.50 98.53 96.97 88.89 96.97 91.89 96.15 100.00 98.63 97.14 96.55 98.31 98.25 98.41 96.67 90.91 96.12 97.50 98.08 100.00 97.56 97.67 96.00 95.29 97.92 95.08 94.87 96.97 96.88 98.18 93.62 98.36 96.88 N multi_cassette CG1674,I_chr4_253475_257020,F_chr4_258186_259747,F_chr4_259865_260939,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_254972_260939 chr4_254972_257020;chr4_257102_257894;chr4_258186_260939 chr4_257021_257101;chr4_257895_258185 chr4_254893_254971;chr4_260940_261024 100.00 100.00 100.00 58.82 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention th,I_chr3L_16033166_16034018,I_chr3L_16033166_16035885,I_chr3L_16036172_16039584,I_chr3L_16036172_16043557,RI_chr3L_16038514_16039584,RI_chr3L_16038543_16039584,RI_chr3L_16039065_16039584 chr3L - chr3L_16033166_16037613 chr3L_16033165_16033166;chr3L_16037613_16037614 chr3L_16033066_16033165;chr3L_16037614_16037682 45.05 33.33 60.00 62.50 50.00 46.15 38.71 51.52 59.57 NA 42.86 45.10 42.86 45.83 60.71 54.72 52.94 44.00 52.00 41.00 41.18 64.29 37.50 43.75 54.55 44.44 70.83 87.50 52.63 56.25 28.57 NA 66.67 56.52 45.00 NA 35.29 30.77 31.58 46.43 38.46 52.38 45.45 50.00 NA 30.77 22.22 50.00 47.62 28.57 43.33 31.25 NA 33.33 41.67 29.41 40.00 33.33 K alternative_acceptor Ddip2,I_chr3L_252498_252538,I_chr3L_252776_253313 chr3L - chr3L_252464_252538 chr3L_252482_252538 chr3L_252539_252638;chr3L_252398_252463 100.00 95.00 100.00 97.62 100.00 94.74 100.00 97.92 97.62 95.45 94.74 97.14 100.00 95.65 100.00 96.77 100.00 94.74 96.77 97.30 100.00 100.00 95.83 100.00 100.00 100.00 100.00 90.00 96.97 92.86 97.22 94.44 100.00 97.73 100.00 100.00 100.00 90.91 100.00 97.67 100.00 97.44 100.00 95.83 100.00 100.00 93.75 100.00 97.44 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 K alternative_donor msk,I_chr3L_8109906_8110404 chr3L + chr3L_8109630_8110404 chr3L_8109906_8110404 chr3L_8110405_8110504;chr3L_8109278_8109629 0.00 0.00 0.00 0.29 0.00 0.53 0.00 0.31 0.00 0.00 0.00 0.28 0.00 0.00 0.40 0.39 0.00 0.00 0.58 0.26 0.00 0.39 0.27 0.00 0.00 0.50 0.39 0.00 0.00 0.38 0.48 0.00 0.53 0.30 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.32 0.00 0.36 0.00 0.00 0.00 0.00 0.27 0.00 0.53 0.00 0.00 0.00 0.36 0.00 0.00 0.00 K jcn_only_AA Fas1,I_chr3R_12460976_12461267 chr3R + chr3R_12451939_12457330 chr3R_12451939_12455281 chr3R_12451691_12451938 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention fry,I_chr3L_9636648_9656042 chr3L - chr3L_9636227_9636307 chr3L_9636226_9636227;chr3L_9636307_9636308 chr3L_9636128_9636226;chr3L_9636308_9636441 6.75 4.44 0.00 10.81 6.67 4.65 11.11 1.61 5.66 0.00 9.68 4.48 8.11 7.89 11.11 10.81 2.94 6.82 7.89 3.39 6.67 10.91 11.86 5.26 13.95 8.11 7.27 9.09 26.32 4.08 16.33 3.85 0.00 5.17 7.14 5.71 6.25 6.52 5.80 7.41 11.11 6.25 7.41 5.13 0.00 6.25 9.68 8.51 3.45 0.00 11.94 6.90 NA 6.67 5.77 12.00 8.70 9.52 K intron_retention l(1)G0334,I_chrX_4596624_4596856,I_chrX_4596625_4596762 chrX + chrX_4596625_4596724 chrX_4596624_4596625;chrX_4596724_4596725 chrX_4596525_4596624;chrX_4596725_4596925 13.64 18.18 20.69 16.36 25.00 19.23 5.10 16.95 15.52 7.69 10.00 11.76 18.18 13.04 10.71 14.89 15.62 8.33 13.95 11.90 14.81 NA 20.83 12.00 8.33 15.56 29.41 NA NA NA 15.15 10.00 11.76 18.64 18.75 5.26 9.52 0.00 9.68 18.92 6.45 11.43 22.73 26.92 17.65 8.33 13.33 0.00 14.81 NA 14.29 12.50 NA 3.85 16.28 NA 8.33 7.14 K alternative_donor lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6394546_6419543,I_chr2R_6397642_6398119,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6397642_6419543 chr2R_6397642_6398119 chr2R_6397549_6397641;chr2R_6419544_6419624 6.12 6.38 6.56 11.25 5.41 6.38 11.94 12.00 13.54 5.00 5.71 10.47 9.52 13.64 7.55 13.92 10.53 6.12 10.87 7.83 5.00 2.44 6.10 5.26 5.56 4.65 6.90 4.76 4.17 4.48 7.35 4.00 2.44 12.82 4.62 4.48 4.00 3.85 2.20 4.27 3.77 9.78 10.00 7.27 4.55 4.29 4.26 3.51 12.50 5.56 6.67 7.32 7.14 6.45 5.97 6.45 8.00 4.05 N cassette CG6912 chr3R - chr3R_10962115_10962431 chr3R_10962115_10962193;chr3R_10962254_10962431 chr3R_10962194_10962253 chr3R_10962052_10962114;chr3R_10962432_10962439 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,I_chr2R_15350149_15350210,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350157_15351846;chr2R_15350149_15351846;chr2R_15350437_15351846 chr2R_15350285_15351846 chr2R_15351847_15351914;chr2R_15350068_15350148 9.52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.52 NA NA NA NA NA NA NA NA NA K intron_retention Vha44,I_chr2R_12220926_12223455 chr2R - chr2R_12214666_12220538 chr2R_12214665_12214666;chr2R_12220538_12220539 chr2R_12214479_12214665;chr2R_12220539_12220692 1.80 2.33 1.96 4.76 1.30 1.28 3.09 1.43 0.51 1.79 2.44 1.80 0.00 3.03 3.16 0.00 1.75 1.37 0.00 3.08 1.19 0.87 4.07 0.97 0.00 1.05 1.89 3.85 1.94 2.78 4.30 4.00 1.61 1.72 2.78 5.19 1.64 2.02 3.85 2.17 0.00 2.37 2.90 0.00 0.00 1.80 0.00 1.49 1.28 2.94 3.23 0.00 0.00 1.56 1.87 5.88 2.82 1.72 K intron_retention msl-3 chr3L - chr3L_7117443_7117500 chr3L_7117442_7117443;chr3L_7117500_7117501 chr3L_7116946_7117442;chr3L_7117501_7118058 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention Fpps chr2R - chr2R_7194465_7194535 chr2R_7194464_7194465;chr2R_7194535_7194536 chr2R_7194370_7194464;chr2R_7194536_7194587 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA Hr78,I_chr3L_21490089_21490390,CG33214 chr3L - chr3L_21490008_21490390;chr3L_21490089_21490390;chr3L_21490023_21490390 chr3L_21489978_21490390 chr3L_21490391_21490490;chr3L_21489920_21489977 11.76 NA NA 14.71 NA NA 8.00 11.76 20.00 NA NA NA 0.00 NA NA 15.15 NA NA NA 13.04 NA NA NA NA NA NA NA NA NA NA NA NA NA 11.11 NA NA NA NA NA NA NA 11.11 NA NA NA NA NA NA 11.54 NA NA NA NA NA 13.64 NA NA NA N alternative_acceptor Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629579_2629913;chr3L_2629613_2629913;chr3L_2629585_2629913;chr3L_2629684_2629913;chr3L_2629597_2629913 chr3L_2629527_2629913 chr3L_2629914_2629921;chr3L_2629427_2629526 82.82 80.50 80.41 72.34 78.03 82.40 69.92 83.13 71.49 73.91 57.59 79.87 70.24 81.33 83.49 80.90 74.30 86.59 82.83 84.21 74.25 100.00 85.96 81.40 82.47 82.82 74.15 82.05 88.89 87.64 84.31 83.47 85.33 77.65 86.52 80.49 80.85 86.21 84.26 86.76 86.63 80.59 80.84 84.18 92.54 92.31 89.52 89.15 82.74 79.63 86.05 81.16 92.41 90.57 81.80 85.26 88.46 94.07 K alternative_donor exba,RI_chr3R_1425087_1425302,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1425087_1425759;chr3R_1425087_1426125;chr3R_1425087_1426009 chr3R_1425087_1426209 chr3R_1424987_1425086;chr3R_1426210_1426225 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 5.26 0.00 7.14 0.00 6.67 0.00 0.00 0.00 0.00 0.00 6.67 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 6.25 0.00 0.00 8.33 K alternative_donor CG17082,I_chr2R_632143_635290,R_chr2R_642176_644740,I_chr2R_644094_644145,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_632192_632274;chr2R_631984_632274;chr2R_632196_632274;chr2R_632085_632274 chr2R_632143_632274 chr2R_632275_632399;chr2R_631970_631983 66.67 NA NA 83.33 NA NA 50.00 50.00 50.00 NA NA 25.00 NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA K intron_retention I_chrX_516392_517480,CG13369,CG17829 chrX + chrX_518378_518439 chrX_518377_518378;chrX_518439_518440 chrX_517829_518377;chrX_518440_518805 1.31 0.00 5.71 4.00 0.00 0.00 0.00 0.00 3.92 0.00 0.00 4.17 7.14 0.00 0.00 0.00 0.00 0.00 0.00 4.84 0.00 15.56 4.00 1.61 0.00 NA 5.26 0.00 5.71 0.00 16.67 12.00 2.08 2.78 0.00 6.06 8.47 0.00 3.64 3.77 5.41 3.57 0.00 4.44 6.45 3.57 4.76 0.00 0.00 0.00 8.93 0.00 0.00 1.79 9.52 0.00 1.00 0.00 K cassette unk,I_chr3R_18980963_18981530 chr3R - chr3R_18980497_18981530 chr3R_18980497_18980566;chr3R_18980693_18981530 chr3R_18980567_18980692 chr3R_18979916_18980496;chr3R_18981531_18981630 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD AIF chr2L + chr2L_2152466_2152662;chr2L_2152271_2152662 chr2L_2152463_2152662 chr2L_2152663_2152944;chr2L_2152233_2152270 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Anxb11,I_chrX_16314152_16314405,I_chrX_16314152_16315813 chrX - chrX_16314152_16315813 chrX_16314151_16314152;chrX_16315813_16315814 chrX_16314083_16314151;chrX_16315814_16315913 58.33 46.67 NA 63.16 NA 75.00 65.00 84.21 67.86 NA 72.73 37.84 NA 76.92 41.67 75.00 58.33 66.67 84.62 59.09 NA 50.00 80.00 50.00 50.00 70.00 58.33 NA 40.00 57.14 45.45 NA 50.00 75.00 40.00 43.75 42.86 50.00 33.33 43.48 NA 64.00 75.00 51.85 44.44 66.67 47.06 64.29 75.00 42.31 65.00 NA NA NA 66.67 NA 50.00 53.33 K jcn_only_AA TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748981_19749783 chr2R_19748984_19749783 chr2R_19749784_19750104;chr2R_19748884_19748980 27.77 23.26 35.00 26.15 27.59 46.34 37.88 27.27 33.33 NA 25.93 25.32 28.12 30.23 19.44 30.19 18.75 38.24 20.75 26.39 30.95 34.38 13.33 32.35 20.83 21.74 27.27 30.43 NA 37.04 33.33 NA NA 32.79 NA 25.93 20.00 34.38 17.07 28.57 14.29 32.10 41.38 19.44 34.78 12.50 36.36 23.68 27.94 21.21 10.87 22.86 45.00 14.29 42.00 34.21 18.92 28.89 K intron_retention CG5018,PDCD-5 chr3L - chr3L_16219459_16219686 chr3L_16219458_16219459;chr3L_16219686_16219687 chr3L_16219222_16219458;chr3L_16219687_16221520 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor mop chr3L - chr3L_14763292_14763354 chr3L_14763300_14763354 chr3L_14763355_14763536;chr3L_14763112_14763291 100.00 100.00 95.65 97.96 100.00 100.00 97.62 97.73 100.00 100.00 100.00 100.00 100.00 95.65 100.00 97.22 100.00 96.43 100.00 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 97.44 96.97 100.00 97.83 96.30 100.00 97.83 100.00 98.21 100.00 100.00 96.77 100.00 100.00 95.65 98.08 100.00 100.00 100.00 95.00 100.00 100.00 100.00 97.67 96.97 K mutually_exclusive MESR3 chr2L + chr2L_18617725_18649597,chr2L_18649628_18660208 chr2L_18617725_18631742,chr2L_18631775_18660208 chr2L_18649598_18649627 chr2L_18631743_18631774 chr2L_18617279_18617724;chr2L_18660209_18661757 36.67 18.52 43.33 57.14 36.84 37.93 47.46 53.33 52.38 40.00 38.46 41.10 46.43 33.33 31.25 53.70 35.71 28.57 28.57 44.93 37.04 33.33 28.57 28.57 30.00 42.86 33.33 26.09 43.75 22.22 38.10 21.05 29.63 37.04 39.39 37.93 32.69 23.33 52.78 33.33 44.44 44.30 50.00 27.27 34.62 38.24 32.14 47.83 50.00 34.09 18.42 35.29 36.67 18.18 33.33 39.02 35.71 36.67 K intron_retention Abl,I_chr3L_16622304_16639909,RI_chr3L_16652567_16654512 chr3L - chr3L_16619964_16620021 chr3L_16619963_16619964;chr3L_16620021_16620022 chr3L_16619843_16619963;chr3L_16620022_16620292 1.04 3.54 2.20 6.19 0.00 2.63 1.96 0.00 0.00 0.00 1.22 2.45 0.00 1.59 1.98 2.35 0.00 0.00 2.86 2.78 2.90 2.08 2.27 0.70 0.00 0.00 5.47 6.54 1.52 1.97 1.77 0.00 2.72 0.00 1.04 0.00 0.52 0.00 0.00 2.17 0.00 1.94 1.54 0.00 1.03 0.00 2.99 2.34 1.68 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 K cassette ssp4,RI_chr2R_13409412_13411004,I_chr2R_13409412_13411328,I_chr2R_13409412_13411588,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13408434_13411328;chr2R_13410466_13411328;chr2R_13408434_13411588;chr2R_13410466_13411588;chr2R_13409406_13411328;chr2R_13409406_13411588 chr2R_13410466_13411004,chr2R_13408434_13411004,chr2R_13409406_13411004;chr2R_13411077_13411588,chr2R_13411077_13411328 chr2R_13411005_13411076 chr2R_13408151_13408433;chr2R_13411589_13411688 2.70 0.00 5.00 1.59 2.86 0.00 1.32 2.22 2.86 4.55 0.00 1.61 0.00 0.00 2.70 3.45 0.00 5.00 3.23 6.06 0.00 8.33 1.92 0.00 0.00 0.00 5.13 2.94 0.00 3.33 3.85 4.35 0.00 2.22 0.00 0.00 2.22 8.70 0.00 1.23 3.23 2.86 2.70 5.00 2.78 3.77 3.70 4.55 4.08 4.26 2.08 7.41 0.00 0.00 2.27 2.94 0.00 3.23 K intron_retention Amph,I_chr2R_8498227_8498492 chr2R + chr2R_8497142_8498083 chr2R_8497141_8497142;chr2R_8498083_8498084 chr2R_8496734_8497141;chr2R_8498084_8498226 6.25 0.00 0.00 14.29 4.17 0.00 10.71 16.28 6.78 NA 44.44 6.25 17.14 10.00 0.00 0.00 11.11 0.00 4.65 8.82 35.71 14.29 4.35 0.00 NA 0.00 0.00 NA 9.09 0.00 8.00 NA 18.75 8.11 NA 12.50 0.00 0.00 3.33 4.55 NA 9.43 10.81 5.71 NA NA 4.35 9.52 6.45 5.56 0.00 NA NA NA 6.25 11.76 NA 0.00 K intron_retention CG8709,I_chr2R_4027128_4027182,I_chr2R_4027682_4027747,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4026547_4026626 chr2R_4026546_4026547;chr2R_4026626_4026627 chr2R_4026443_4026546;chr2R_4026627_4027127 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG2924,I_chrX_2163288_2163676,I_chrX_2163738_2163863,I_chrX_2163738_2164440,I_chrX_2163738_2164560,I_chrX_2168373_2168893 chrX - chrX_2163738_2164731;chrX_2163738_2164670 chrX_2163738_2164440 chrX_2163677_2163737;chrX_2164732_2164736 11.11 NA NA 9.09 NA NA 10.00 0.00 11.11 NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 11.11 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA K intron_retention RpL5,I_chr2L_22428750_22428846 chr2L - chr2L_22427471_22427525 chr2L_22427470_22427471;chr2L_22427525_22427526 chr2L_22427402_22427470;chr2L_22427526_22427795 96.75 98.55 91.67 98.38 95.45 94.92 95.16 97.54 96.45 92.31 95.12 97.28 86.67 93.83 93.33 98.13 92.16 88.76 94.79 94.41 90.24 93.64 99.22 93.75 98.48 97.30 97.27 96.88 100.00 97.83 95.71 98.75 97.70 96.48 95.74 100.00 96.08 100.00 97.62 96.75 98.37 96.46 94.29 98.91 92.22 94.20 96.30 95.60 98.62 98.82 97.67 98.61 97.37 96.34 98.73 98.00 99.08 97.55 K intron_retention sd,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15717261_15717340 chrX_15717260_15717261;chrX_15717340_15717341 chrX_15717220_15717260;chrX_15717341_15717515 1.93 0.00 0.00 3.85 0.00 NA 11.11 0.00 5.71 NA NA 12.50 12.50 0.00 5.56 5.26 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA 20.00 NA NA 0.00 NA NA 0.00 NA NA NA NA 6.25 NA NA 7.41 0.00 7.69 NA NA NA 6.67 0.00 NA 0.00 NA NA NA 9.52 NA NA NA K alternative_donor CG32016,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_978750_978914;chr4_978750_978939;chr4_978750_978910 chr4_978750_978816 chr4_978632_978749;chr4_978940_978943 27.27 NA NA NA NA NA 42.86 27.27 20.00 NA NA 25.00 NA 40.00 NA 35.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA 44.44 NA NA NA NA NA NA NA NA NA K intron_retention gw,RI_chr4_679135_679703,I_chr4_679135_680299,RI_chr4_679135_680693,I_chr4_679135_681047,I_chr4_679135_681671,noncoding_20755 chr4 - chr4_679135_681054 chr4_679134_679135;chr4_681054_681055 chr4_679035_679134;chr4_681055_681117 0.00 NA 0.00 3.17 NA NA 0.00 4.17 4.84 NA NA 0.00 0.00 11.43 0.00 4.84 0.00 NA 5.71 6.90 NA NA 0.00 NA NA 0.00 12.50 NA NA 6.67 0.00 NA 12.50 3.92 0.00 8.33 NA NA NA 0.00 NA 0.00 10.53 0.00 NA NA NA NA 3.70 NA 0.00 NA NA NA 0.00 NA NA 0.00 K alternative_acceptor Rbf chrX - chrX_691717_691794 chrX_691726_691794 chrX_691795_692175;chrX_691252_691716 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 94.74 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 90.91 93.33 93.75 100.00 100.00 100.00 93.33 100.00 93.75 100.00 100.00 95.35 96.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 NA 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 92.86 K jcn_only_AD CG17600,RI_chrX_21942934_21943180 chrX + chrX_21942905_21943180 chrX_21942934_21943180 chrX_21943181_21943280;chrX_21942834_21942904 2.22 2.04 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 19.23 5.45 4.17 NA 12.50 4.35 0.00 NA 16.67 3.64 10.00 0.00 3.57 3.77 2.50 3.23 5.56 0.00 12.00 3.57 7.14 0.00 0.00 2.50 0.00 0.00 0.00 0.00 3.23 0.00 0.00 2.22 0.00 0.00 1.49 4.92 4.00 0.00 2.63 3.77 4.65 0.00 2.56 4.35 NA 2.94 0.00 0.00 K cassette CG34408,I_chrX_10120689_10121004 chrX + chrX_10116620_10118951;chrX_10117489_10118951 chrX_10117489_10118346,chrX_10116620_10118346;chrX_10118539_10118951 chrX_10118347_10118538 chrX_10116359_10116619;chrX_10118952_10119092 92.86 96.30 83.33 88.00 93.75 84.62 100.00 84.62 91.67 81.25 78.57 95.12 66.67 93.33 94.44 93.75 86.67 87.50 100.00 95.56 84.62 75.00 91.84 95.24 90.91 92.86 97.37 92.00 82.61 82.61 92.86 91.67 92.00 93.75 94.44 96.30 98.11 84.78 92.86 92.50 92.31 95.92 91.67 96.15 95.24 88.00 94.74 92.86 97.44 94.12 89.74 94.12 95.00 100.00 94.74 84.62 92.59 93.33 K intron_retention CG2691,noncoding_23539 chrX - chrX_13518140_13518196 chrX_13518139_13518140;chrX_13518196_13518197 chrX_13517580_13518139;chrX_13518197_13518439 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_137345_137445 chr4_137344_137345;chr4_137445_137446 chr4_137321_137344;chr4_137446_139127 99.04 100.00 97.56 95.70 100.00 96.43 96.83 98.45 98.69 100.00 100.00 99.10 97.56 100.00 96.88 99.29 100.00 96.88 98.18 97.70 100.00 100.00 100.00 96.77 100.00 95.45 100.00 87.50 94.74 100.00 100.00 100.00 97.56 99.04 97.30 96.30 100.00 94.74 100.00 100.00 97.92 99.05 97.83 97.44 100.00 97.33 100.00 100.00 99.26 98.00 97.67 100.00 96.43 100.00 100.00 100.00 96.92 98.88 K jcn_only_AA pds5,RI_chr2R_7915738_7915799,I_chr2R_7922306_7922992 chr2R + chr2R_7915738_7916057 chr2R_7915738_7915799 chr2R_7915638_7915737;chr2R_7916058_7916160 9.62 6.25 13.51 3.57 16.67 NA 21.05 5.88 12.50 9.68 NA 18.33 36.00 5.00 5.56 11.11 NA NA 20.83 7.45 13.79 12.96 5.88 3.70 5.41 22.22 9.76 6.90 8.00 13.16 4.55 NA 11.25 8.77 13.33 13.64 7.02 2.17 10.29 7.04 NA 7.59 NA 5.36 NA 3.23 4.76 9.62 8.47 NA 11.11 5.26 12.50 NA 15.00 NA NA 9.68 K intron_retention CG3632,RI_chrX_16195880_16196242 chrX + chrX_16190941_16191693 chrX_16190940_16190941;chrX_16191693_16191694 chrX_16190893_16190940;chrX_16191694_16191751 68.34 NA NA 80.00 NA NA 66.67 85.00 66.67 NA NA 72.22 66.67 NA NA 75.00 NA NA 75.00 65.22 NA NA 60.00 63.64 NA 41.67 76.92 NA 45.45 NA 77.78 NA NA 56.52 53.85 NA 70.00 NA 75.00 66.67 NA 59.09 NA 70.00 90.00 76.47 NA 83.33 60.00 NA 66.67 NA NA NA NA NA NA 75.00 K intron_retention bl,I_chr2R_16481586_16483061 chr2R + chr2R_16486031_16486103 chr2R_16486030_16486031;chr2R_16486103_16486104 chr2R_16485958_16486030;chr2R_16486104_16486199 0.00 1.32 0.00 1.52 0.00 0.00 2.61 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CaMKII,I_chr4_1059085_1060638,I_chr4_1059085_1065781,RI_chr4_1061742_1064093,RI_chr4_1061742_1065781,I_chr4_1061989_1065781,RI_chr4_1063745_1065781,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1060705_1065781 chr4_1060704_1060705;chr4_1065781_1065782 chr4_1060696_1060704;chr4_1065782_1065874 9.17 NA NA 8.70 NA NA 23.08 16.67 8.82 NA NA 0.00 NA NA NA 38.46 NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.52 NA NA NA NA NA NA NA NA 0.00 K jcn_only_AA spen,I_chr2L_187184_187481,I_chr2L_200676_200752 chr2L + chr2L_199744_200119 chr2L_199744_199902 chr2L_199637_199743 3.03 4.76 1.82 1.79 3.77 8.96 0.93 0.79 2.74 2.56 0.00 2.00 2.00 1.56 3.30 2.94 3.77 2.90 1.45 1.55 0.00 8.24 4.84 8.57 0.00 1.18 5.74 7.30 8.11 6.90 1.39 6.00 6.45 1.85 3.75 8.33 3.60 3.12 4.59 3.91 1.92 1.97 4.00 5.41 3.57 2.82 3.03 1.32 1.35 4.29 2.17 0.00 6.67 3.33 3.09 9.09 2.78 0.00 K jcn_only_AA Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4833234_4834454 chrX_4833234_4834343 chrX_4833206_4833233;chrX_4834455_4834880 2.86 NA NA 3.12 NA NA 0.00 5.71 0.00 NA NA 0.00 NA 4.35 NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA 4.35 NA NA 0.00 3.23 NA NA NA NA NA NA NA 2.86 NA NA NA NA NA 4.17 3.45 NA NA NA NA NA NA NA NA NA N jcn_only_AA CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789733_9789790;chr2L_9789740_9789790;chr2L_9789694_9789790;chr2L_9789718_9789790;chr2L_9789751_9789790 chr2L_9789598_9789790 chr2L_9789791_9789832;chr2L_9789594_9789597 1.20 0.91 1.85 1.15 1.92 0.87 0.42 0.00 1.28 0.00 1.28 0.00 0.00 2.03 2.67 1.44 1.69 0.87 1.14 1.33 1.30 1.69 1.25 2.94 1.43 1.11 1.27 0.00 1.01 0.00 0.39 1.27 1.36 0.39 3.90 2.08 0.00 0.00 0.00 1.84 0.00 0.81 0.85 0.75 1.20 1.52 5.97 2.58 1.03 3.23 1.82 1.11 3.85 1.85 1.05 0.00 1.75 0.78 K cassette CG1308,CG1295 chr3L + chr3L_4195388_4195840 chr3L_4195388_4195589;chr3L_4195716_4195840 chr3L_4195590_4195715 chr3L_4195360_4195387;chr3L_4195841_4195990 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 90.48 NA 87.50 100.00 88.89 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 94.74 87.50 100.00 85.71 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 87.50 92.31 100.00 90.91 93.75 NA 95.24 83.33 90.91 NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA K cassette CG6854,E_chr3L_15091621_15103920,RI_chr3L_15102059_15102345 chr3L + chr3L_15102059_15102643 chr3L_15102059_15102437;chr3L_15102588_15102643 chr3L_15102438_15102587 chr3L_15102027_15102058;chr3L_15102644_15103437 100.00 100.00 100.00 100.00 100.00 100.00 95.83 95.00 100.00 94.74 90.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 94.74 96.00 100.00 100.00 100.00 100.00 95.24 95.45 100.00 100.00 100.00 95.45 100.00 93.75 100.00 100.00 100.00 100.00 97.22 96.43 100.00 100.00 100.00 100.00 100.00 100.00 96.55 96.43 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 95.83 K jcn_only_AA Dbp80 chr3LHet + chr3LHet_2543829_2543938;chr3LHet_2543829_2543917 chr3LHet_2543829_2543887 chr3LHet_2543765_2543828;chr3LHet_2543939_2543944 94.44 92.59 NA 93.94 95.00 91.67 100.00 93.02 100.00 NA NA 94.12 90.48 100.00 90.48 97.67 95.45 85.19 96.30 NA NA NA NA NA NA NA 100.00 NA NA NA 86.21 NA NA 96.88 NA NA NA NA NA 92.31 NA 96.67 NA 97.37 NA NA 93.22 NA 95.56 NA 93.94 NA NA NA 94.44 92.59 100.00 NA K intron_retention CG7536,I_chrX_17976413_17979287,I_chrX_17976413_17979359,CG7206 chrX - chrX_17976413_17979226 chrX_17976412_17976413;chrX_17979226_17979227 chrX_17976313_17976412;chrX_17979227_17979526 9.52 11.76 10.53 16.67 9.52 12.50 15.38 14.29 12.90 0.00 0.00 10.00 NA 12.00 31.25 15.00 NA NA 13.33 12.12 8.33 10.00 0.00 12.50 0.00 22.22 0.00 9.52 0.00 0.00 14.29 NA 4.44 6.90 0.00 0.00 6.67 9.09 11.43 8.33 0.00 15.79 14.29 3.70 NA 4.55 0.00 6.45 9.76 0.00 7.41 NA NA 11.76 13.04 5.88 NA NA N alternative_acceptor CG33967 chr3R - chr3R_10528292_10528612 chr3R_10528308_10528612 chr3R_10528613_10528911;chr3R_10526678_10528291 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 37.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG7272 chr3L + chr3L_15496343_15496413 chr3L_15496343_15496407 chr3L_15496274_15496342;chr3L_15496414_15496474 100.00 100.00 100.00 99.25 100.00 100.00 97.20 100.00 99.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.82 100.00 100.00 97.44 99.24 100.00 100.00 100.00 100.00 98.70 100.00 100.00 100.00 98.78 98.63 100.00 100.00 98.15 100.00 100.00 100.00 100.00 100.00 100.00 98.68 98.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.99 100.00 99.13 99.05 100.00 98.86 100.00 K jcn_only_AD CG40160 chr3LHet + chr3LHet_1562418_1566509 chr3LHet_1562441_1566509 chr3LHet_1566510_1566570;chr3LHet_1562399_1562417 90.28 NA NA NA NA NA 90.32 94.29 88.89 NA NA 85.71 NA 87.50 NA 100.00 NA NA NA 85.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 90.24 NA NA NA NA NA NA NA 95.83 NA NA NA NA NA NA 96.97 NA NA NA NA NA NA NA NA NA K alternative_donor RpL10Ab chr3L + chr3L_11816456_11816757;chr3L_11816530_11816757 chr3L_11816666_11816757 chr3L_11816758_11817314;chr3L_11816300_11816455 1.33 1.48 0.89 1.08 1.18 0.98 1.38 1.16 1.19 2.58 1.25 1.20 1.23 1.26 1.02 0.92 1.26 0.97 1.21 0.94 0.98 2.75 2.10 1.83 2.02 0.93 1.87 4.42 1.62 2.14 4.33 1.41 1.97 1.15 1.45 1.39 2.33 2.03 1.40 1.23 1.77 1.14 1.03 2.52 1.33 1.30 1.62 1.07 2.07 2.20 2.47 2.84 1.07 1.26 0.97 2.02 1.39 0.77 K intron_retention CG14222,e(y)3 chrX - chrX_19516505_19516569 chrX_19516504_19516505;chrX_19516569_19516570 chrX_19516368_19516504;chrX_19516570_19516699 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.94 K jcn_only_AD Dref chr2L - chr2L_9965316_9965378 chr2L_9965316_9965375 chr2L_9964928_9965315;chr2L_9965379_9965668 100.00 100.00 100.00 100.00 100.00 100.00 99.19 100.00 100.00 100.00 100.00 99.42 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.65 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD LSm7 chr2L - chr2L_16742443_16742625;chr2L_16742443_16742634 chr2L_16742443_16742662 chr2L_16742326_16742442;chr2L_16742663_16742986 1.85 2.27 5.19 5.07 1.61 5.97 2.34 3.88 0.00 0.00 1.69 1.29 0.61 1.89 2.60 1.98 4.08 0.00 1.01 1.42 6.45 2.04 1.35 1.14 0.00 1.52 2.47 3.90 6.25 4.08 1.28 0.00 5.17 3.65 1.82 NA 3.96 1.25 1.68 2.47 6.35 1.45 0.00 1.47 2.00 5.32 0.82 0.00 0.62 2.11 1.02 0.00 5.13 1.64 5.41 0.96 2.19 4.48 K intron_retention lkb1 chr3R + chr3R_9504789_9504847 chr3R_9504788_9504789;chr3R_9504847_9504848 chr3R_9504472_9504788;chr3R_9504848_9505152 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 96.88 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 94.74 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 K jcn_only_AD CG15609,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12902708_12903184;chr2R_12902708_12903163;chr2R_12902708_12903198 chr2R_12902708_12903167 chr2R_12902608_12902707;chr2R_12903199_12903284 48.08 61.29 42.86 44.32 48.15 43.59 35.59 36.73 46.55 48.57 48.00 45.00 47.62 35.71 53.12 52.13 45.65 50.00 48.94 53.42 42.42 37.04 57.14 40.54 31.25 57.14 78.38 NA 48.00 57.69 46.38 50.00 61.29 52.69 46.34 77.78 47.62 20.00 NA 60.56 62.86 55.70 57.14 36.17 NA 37.74 NA 49.15 50.63 33.33 40.43 37.04 NA NA 57.41 50.00 NA 61.76 K alternative_donor Rab23,I_chr3R_1508710_1508882 chr3R - chr3R_1508710_1508882;chr3R_1508710_1511119 chr3R_1508710_1510597 chr3R_1508610_1508709;chr3R_1511120_1511186 16.67 0.00 20.00 16.67 16.67 0.00 20.00 10.00 8.33 0.00 18.18 0.00 20.00 33.33 33.33 14.29 25.00 12.50 25.00 15.79 16.67 0.00 33.33 33.33 50.00 16.67 0.00 25.00 25.00 33.33 11.11 0.00 33.33 12.50 0.00 25.00 33.33 50.00 33.33 6.67 0.00 9.09 25.00 25.00 NA 20.00 0.00 25.00 6.67 0.00 0.00 0.00 0.00 NA 0.00 0.00 33.33 0.00 K cassette Pkn,CI_chr2R_5143544_5146344,E_chr2R_5159680_5162493,I_chr2R_5159680_5171332,I_chr2R_5171635_5172166 chr2R - chr2R_5155482_5171332 chr2R_5155482_5159489;chr2R_5159680_5171332 chr2R_5159490_5159679 chr2R_5155160_5155481;chr2R_5171333_5171432 5.00 7.14 4.76 2.20 2.44 4.17 5.56 3.57 6.76 8.33 2.70 3.33 6.82 2.78 2.27 9.80 5.71 7.69 2.38 5.81 8.57 12.24 11.76 7.50 7.14 3.77 10.00 50.00 11.43 4.65 2.00 0.00 10.81 5.33 14.29 2.86 2.94 3.12 6.25 5.00 5.00 3.95 7.50 9.52 NA 0.00 0.00 4.08 2.60 3.85 3.92 2.78 NA NA 6.52 7.69 NA 0.00 N alternative_acceptor Dhap-at,CG33494 chr3R - chr3R_21320135_21320838 chr3R_21320143_21320838 chr3R_21320839_21320926;chr3R_21319958_21320134 100.00 100.00 100.00 100.00 100.00 100.00 96.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD F_chr2L_15260838_15261717,cul-3 chr2L - chr2L_15271144_15271322;chr2L_15271144_15271202 chr2L_15271144_15271833 chr2L_15270905_15271143;chr2L_15271834_15271894 82.76 76.36 86.67 86.71 84.62 78.85 87.31 85.83 85.31 NA 86.05 81.56 86.76 86.89 86.84 88.46 82.61 85.00 87.50 88.99 82.54 55.74 77.01 83.12 71.74 87.36 80.00 63.64 58.14 77.42 80.00 73.91 67.50 87.02 81.36 83.72 72.22 83.33 93.88 79.73 NA 86.26 91.23 81.08 88.00 79.41 85.29 75.00 93.33 80.00 78.87 90.38 69.23 82.76 82.35 88.89 75.68 71.88 N multi_cassette CG6643,I_chr3R_20370792_20375406 chr3R + chr3R_20378379_20380423 chr3R_20378379_20379716;chr3R_20379803_20380077;chr3R_20380127_20380186;chr3R_20380364_20380423 chr3R_20379717_20379802;chr3R_20380078_20380126;chr3R_20380187_20380363 chr3R_20378208_20378378;chr3R_20380424_20380855 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 73.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG9149,CG2469,Myo61F chr3L + chr3L_1304224_1304279 chr3L_1304223_1304224;chr3L_1304279_1304280 chr3L_1304038_1304223;chr3L_1304280_1304821 0.00 0.00 0.00 1.32 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette PHGPx chr3L + chr3L_3326368_3327859 chr3L_3326368_3327342;chr3L_3327554_3327859 chr3L_3327343_3327553 chr3L_3326358_3326367;chr3L_3327860_3328183 6.99 11.32 6.18 1.14 4.23 5.00 4.33 2.25 4.07 9.29 4.45 11.04 2.38 3.63 4.60 3.42 2.80 4.81 3.41 5.86 3.53 7.07 27.97 20.97 22.00 4.10 27.06 13.10 5.82 10.65 6.21 10.86 5.28 4.12 11.72 25.77 17.49 19.19 22.13 5.46 10.09 4.89 6.06 15.38 7.40 12.71 23.77 5.53 4.93 18.05 19.77 14.29 13.56 37.04 4.14 17.50 13.65 6.99 K intron_retention CG34349,I_chr3R_20889373_20889414 chr3R + chr3R_20889600_20889656 chr3R_20889599_20889600;chr3R_20889656_20889657 chr3R_20889430_20889599;chr3R_20889657_20889838 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA 4.76 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 5.88 NA NA NA 0.00 0.00 0.00 NA K intron_retention RpI1,REFI_chr2R_10491644_10491701 chr2R - chr2R_10485830_10485884 chr2R_10485829_10485830;chr2R_10485884_10485885 chr2R_10485544_10485829;chr2R_10485885_10486378 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K cassette shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9754481_9757364 chr2R_9754481_9754629;chr2R_9754809_9757364 chr2R_9754630_9754808 chr2R_9754381_9754480;chr2R_9757365_9757464 100.00 NA NA NA NA NA 83.33 NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA 77.78 100.00 NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 80.00 NA NA NA 100.00 NA 87.50 NA NA NA NA NA NA NA K jcn_only_AA CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20824494_20825664;chr2L_20824494_20825470;chr2L_20824494_20825271 chr2L_20824494_20826632 chr2L_20824482_20824493 20.00 NA NA 40.91 NA NA NA 32.00 NA NA NA NA NA NA NA 18.18 NA NA NA 46.15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA 4.00 NA NA NA 20.00 NA NA NA NA NA NA NA NA NA K intron_retention CG34200 chr2R + chr2R_1645331_1645415 chr2R_1645330_1645331;chr2R_1645415_1645416 chr2R_1645180_1645330;chr2R_1645416_1645620 0.00 0.00 0.00 1.61 NA 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.38 0.00 0.00 0.95 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 7.14 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 K alternative_donor Hil chr2R - chr2R_16502439_16505634 chr2R_16502439_16505571 chr2R_16502011_16502438;chr2R_16505635_16505711 77.78 53.33 58.82 75.00 63.64 92.31 92.86 84.21 60.00 77.78 43.75 83.33 88.89 66.67 83.33 68.18 45.45 71.43 69.23 84.48 85.71 75.00 79.41 80.00 81.25 72.73 82.61 80.00 80.77 60.87 73.33 72.22 95.83 64.00 85.71 95.00 67.44 62.50 87.10 64.29 90.91 73.33 62.50 64.52 92.86 86.67 60.00 88.00 79.17 75.00 73.91 75.00 90.91 90.91 78.57 73.33 100.00 94.44 K intron_retention CG8188,I_chrX_17595810_17596592 chrX - chrX_17594911_17594995 chrX_17594910_17594911;chrX_17594995_17594996 chrX_17593833_17594910;chrX_17594996_17595198 100.00 100.00 100.00 100.00 100.00 98.51 100.00 99.44 99.44 100.00 100.00 100.00 100.00 100.00 98.98 100.00 98.55 100.00 100.00 100.00 98.44 98.67 100.00 100.00 100.00 100.00 100.00 98.11 99.18 98.98 99.30 100.00 99.32 99.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.52 99.09 100.00 99.47 100.00 100.00 98.15 100.00 100.00 99.15 100.00 98.77 100.00 K alternative_donor CG1407,RI_chr2R_5918919_5919093,I_chr2R_5918925_5919213,RI_chr2R_5918952_5919084,RI_chr2R_5918952_5919093 chr2R - chr2R_5918952_5919093 chr2R_5918952_5919084 chr2R_5918927_5918951;chr2R_5919094_5919184 24.19 24.19 22.22 22.73 26.39 32.08 22.09 26.52 25.15 21.28 18.31 23.78 30.00 25.00 29.73 25.49 33.78 22.67 22.22 26.25 27.03 18.29 27.14 22.86 34.21 22.62 33.71 33.33 24.00 19.44 24.10 33.33 30.00 20.16 25.64 22.73 21.98 23.88 26.51 10.87 31.82 23.75 24.14 26.47 25.00 19.15 26.98 20.00 24.68 18.75 26.98 20.97 25.81 30.95 24.76 18.00 20.00 11.11 K intron_retention I_chr2L_20738976_20749527,I_chr2L_20740064_20749299,noncoding_4030 chr2L + chr2L_20749389_20749527 chr2L_20749388_20749389;chr2L_20749527_20749528 chr2L_20749300_20749388;chr2L_20749528_20749627 5.99 7.59 6.14 20.00 6.02 2.63 11.98 8.93 5.99 8.00 12.70 11.43 6.59 6.96 3.82 5.79 7.26 5.75 7.53 7.14 11.84 6.52 7.22 5.84 13.04 11.83 9.30 4.55 7.00 2.27 5.24 3.60 0.00 5.06 6.38 11.67 4.65 6.86 4.83 5.14 3.82 9.22 12.62 3.14 1.53 5.45 5.26 3.28 8.50 5.15 8.44 5.00 3.10 2.96 5.76 4.35 3.11 1.38 K cassette Nipped-B,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_588767_607274 chr2R_588767_599318;chr2R_599551_607274 chr2R_599319_599550 chr2R_588445_588766;chr2R_607275_607374 98.65 100.00 100.00 94.74 100.00 97.06 100.00 98.96 99.17 100.00 100.00 97.73 100.00 97.92 100.00 95.74 100.00 97.06 100.00 97.62 100.00 96.67 96.36 96.97 97.06 100.00 97.50 96.88 92.59 96.97 98.65 100.00 100.00 97.89 96.88 96.88 96.00 100.00 94.74 98.08 95.00 97.62 100.00 98.11 100.00 100.00 100.00 97.92 98.94 100.00 100.00 100.00 100.00 90.91 97.92 100.00 100.00 95.65 K intron_retention LamC chr2R - chr2R_10458817_10458881 chr2R_10458816_10458817;chr2R_10458881_10458882 chr2R_10458387_10458816;chr2R_10458882_10458936 92.31 NA 100.00 94.74 91.67 93.75 82.35 91.67 93.02 NA NA 86.21 90.00 92.86 92.86 100.00 78.57 100.00 92.31 92.31 100.00 60.00 95.65 85.71 NA 93.75 95.00 87.50 63.64 92.31 83.33 NA 90.00 95.24 93.75 NA 86.96 63.64 94.44 82.35 NA 96.67 88.89 60.00 NA NA NA 86.67 95.83 NA 81.82 NA NA NA 93.33 NA NA NA K intron_retention Rbm13 chrX + chrX_8795846_8795912 chrX_8795845_8795846;chrX_8795912_8795913 chrX_8795702_8795845;chrX_8795913_8795959 2.67 2.50 4.17 3.45 1.72 0.00 5.45 4.07 3.72 1.02 0.00 2.65 4.00 9.33 6.02 2.75 3.12 6.06 6.58 3.23 2.67 0.00 4.17 2.22 3.28 0.00 3.37 1.27 2.47 0.00 5.88 1.47 3.23 4.21 3.08 2.70 0.61 2.04 2.26 5.10 0.00 5.04 0.00 0.00 0.00 3.70 0.93 5.26 4.90 1.75 4.05 0.00 0.80 7.27 0.00 2.25 2.21 2.45 K intron_retention CG14619,I_chrX_21860097_21860199,RI_chrX_21860097_21868647,I_chrX_21865109_21865522,I_chrX_21869837_21869915 chrX + chrX_21860097_21867984 chrX_21860096_21860097;chrX_21867984_21867985 chrX_21859997_21860096;chrX_21867985_21867995 52.00 NA 50.00 66.67 NA NA 58.33 53.33 52.63 NA NA 50.00 NA NA NA 81.82 NA NA NA 52.00 NA 37.50 53.85 NA NA NA 30.77 4.00 NA 70.59 50.00 NA NA 60.00 NA NA 29.41 NA 36.36 NA NA 53.33 NA 45.45 NA NA NA NA 36.84 NA NA NA NA NA 63.64 NA NA NA K jcn_only_AD CG3632,RI_chrX_16195880_16196242 chrX + chrX_16195880_16196242 chrX_16195951_16196242 chrX_16196243_16196325;chrX_16195846_16195879 98.11 100.00 96.49 90.16 96.97 96.00 100.00 96.15 98.11 96.43 96.55 97.50 100.00 100.00 100.00 94.52 97.96 95.24 96.00 99.09 100.00 100.00 97.83 100.00 100.00 97.62 100.00 97.37 96.36 100.00 97.10 94.87 90.70 97.62 100.00 100.00 98.81 98.25 100.00 95.65 100.00 98.18 94.59 98.51 98.28 97.67 100.00 100.00 97.80 98.84 96.34 97.30 87.88 100.00 96.97 98.41 98.88 98.46 K intron_retention Pvr,I_chr2L_8226604_8228082,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8226394_8226457 chr2L_8226393_8226394;chr2L_8226457_8226458 chr2L_8226210_8226393;chr2L_8226458_8226603 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.36 0.31 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.82 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.33 0.00 0.00 0.28 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG6597 chr3L + chr3L_20295938_20296166;chr3L_20295603_20296166 chr3L_20295972_20296166 chr3L_20296167_20296215;chr3L_20295573_20295602 0.00 11.11 6.25 0.00 0.00 NA 3.45 0.00 2.50 NA 0.00 7.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 5.88 0.00 6.25 9.09 0.00 11.11 NA 6.25 0.00 0.00 0.00 11.11 0.00 0.00 33.33 0.00 NA 10.00 3.70 20.00 4.17 4.76 6.67 0.00 10.00 0.00 6.25 2.94 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K alternative_donor tud,I_chr2R_17086183_17086333 chr2R + chr2R_17072524_17072579 chr2R_17072527_17072579 chr2R_17072580_17073413;chr2R_17072023_17072523 97.22 100.00 93.51 97.18 98.39 98.28 94.26 96.43 96.74 97.22 98.15 97.22 98.28 98.44 98.67 96.34 95.31 94.67 98.18 95.97 98.36 98.96 94.07 98.33 98.31 96.05 95.95 92.16 98.51 97.14 98.53 93.33 100.00 96.43 98.11 98.67 100.00 97.67 97.01 97.83 100.00 93.67 98.00 95.60 100.00 96.55 94.44 98.65 99.15 94.12 98.67 100.00 95.24 94.74 96.70 94.74 93.33 100.00 K alternative_donor CG1718 chrX - chrX_21163958_21164368;chrX_21163958_21164390 chrX_21163958_21164182 chrX_21163741_21163957;chrX_21164391_21164557 40.00 40.00 33.33 47.06 38.46 50.00 50.00 43.24 42.11 35.71 62.50 46.43 42.11 35.29 40.91 40.00 30.00 42.86 50.00 48.28 31.25 52.78 33.33 34.78 50.00 43.75 35.00 58.33 40.74 33.33 37.50 42.86 35.90 44.83 42.11 38.46 35.29 46.67 44.44 41.67 34.78 41.86 45.45 37.50 30.43 38.24 30.43 45.16 38.24 53.85 34.38 38.89 28.57 40.00 40.00 30.00 26.09 36.36 K intron_retention Spt6 chrX + chrX_6163278_6163346 chrX_6163277_6163278;chrX_6163346_6163347 chrX_6163158_6163277;chrX_6163347_6163498 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.19 0.00 0.00 4.08 0.00 2.82 0.00 8.79 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 1.32 1.36 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD mtSSB,I_chr3R_12030259_12030507 chr3R - chr3R_12030259_12030615 chr3R_12030259_12030507 chr3R_12030159_12030258;chr3R_12030616_12030724 0.00 0.24 0.00 0.33 0.00 0.46 0.44 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.78 1.16 0.00 0.19 0.00 0.00 0.30 0.34 0.00 0.00 0.54 0.00 0.00 0.31 0.00 0.38 0.19 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.19 0.00 0.00 K cassette CG41099,I_chr3RHet_1688505_1705884,RI_chr3RHet_1703294_1705884 chr3RHet - chr3RHet_1703294_1705884 chr3RHet_1703294_1705736;chr3RHet_1705816_1705884 chr3RHet_1705737_1705815 chr3RHet_1703194_1703293;chr3RHet_1705885_1705984 86.19 NA NA 100.00 NA NA NA NA NA NA NA 86.67 100.00 85.71 NA 80.00 NA NA 100.00 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA 81.82 NA NA NA NA NA NA 83.33 NA 93.33 K intron_retention CG9323 chr2L - chr2L_20755266_20755319 chr2L_20755265_20755266;chr2L_20755319_20755320 chr2L_20754993_20755265;chr2L_20755320_20755433 0.00 0.00 0.00 7.89 0.00 0.00 4.88 0.00 4.26 16.67 0.00 6.82 0.00 0.00 0.00 3.85 0.00 0.00 0.00 5.77 0.00 0.00 10.81 0.00 0.00 3.85 0.00 15.38 12.00 0.00 0.00 0.00 8.33 2.17 9.52 10.00 0.00 0.00 2.44 4.76 4.76 0.00 0.00 0.00 0.00 5.00 0.00 6.25 6.12 0.00 4.76 3.85 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG34413,I_chr2R_20770882_20770948,F_chr2R_20770891_20770943,I_chr2R_20771136_20772048,I_chr2R_20773500_20774745 chr2R + chr2R_20770882_20770943 chr2R_20770881_20770882;chr2R_20770943_20770944 chr2R_20770801_20770881;chr2R_20770944_20771043 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention UbcD6,RI_chr3R_776749_776832 chr3R - chr3R_776475_778174 chr3R_776474_776475;chr3R_778174_778175 chr3R_776189_776474;chr3R_778175_778538 0.00 0.00 0.00 1.70 0.00 0.00 1.57 1.39 1.43 0.00 2.90 2.54 1.61 1.55 0.00 1.09 0.00 0.00 2.08 0.61 1.37 2.44 1.39 0.00 0.00 0.76 3.09 7.46 1.10 0.00 1.63 0.00 0.00 0.93 0.00 0.00 0.00 0.00 2.38 1.85 1.12 1.45 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 K intron_retention ScpX chr2L + chr2L_18832047_18832105 chr2L_18832046_18832047;chr2L_18832105_18832106 chr2L_18831723_18832046;chr2L_18832106_18832278 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32795,I_chrX_2677459_2682526,I_chrX_2677729_2677799,I_chrX_2679163_2681784 chrX - chrX_2683412_2683778 chrX_2683411_2683412;chrX_2683778_2683779 chrX_2683271_2683411;chrX_2683779_2683818 0.00 NA NA NA NA NA NA NA 7.69 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 11.76 NA NA NA NA NA NA NA NA NA K mutually_exclusive Fis1,I_chr2R_1491917_1491981,I_chr2R_1491917_1492087,I_chr2R_1492154_1492214 chr2R - chr2R_1491917_1492087,chr2R_1492156_1492214 chr2R_1491917_1491972,chr2R_1492022_1492214 chr2R_1492088_1492155 chr2R_1491973_1492021 chr2R_1491817_1491916;chr2R_1492215_1492311 77.78 NA 75.00 77.78 NA NA 50.00 83.33 80.00 NA NA 100.00 NA NA NA 77.78 80.00 NA 75.00 83.33 NA NA NA NA NA 71.43 NA NA NA 66.67 81.82 NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA NA 66.67 NA NA 75.00 88.89 77.78 NA K intron_retention Cirl,R_chr2R_4502755_4503407 chr2R + chr2R_4503509_4503831 chr2R_4503508_4503509;chr2R_4503831_4503832 chr2R_4503408_4503508;chr2R_4503832_4504021 90.00 80.00 84.62 84.85 90.00 63.64 95.83 100.00 88.57 NA 80.00 96.15 92.86 92.31 84.62 95.00 90.00 100.00 94.12 88.46 92.31 88.57 80.00 84.62 90.91 82.35 82.35 73.33 88.89 91.67 80.95 NA 96.55 88.89 77.78 93.75 73.68 75.00 85.71 100.00 93.75 87.10 90.91 95.24 NA 100.00 NA 95.83 92.00 NA 90.00 90.91 NA NA 84.21 NA NA 91.67 K intron_retention RhoGAPp190,I_chrX_17544272_17544863,I_chrX_17546225_17546531 chrX - chrX_17537281_17537713 chrX_17537280_17537281;chrX_17537713_17537714 chrX_17537059_17537280;chrX_17537714_17537827 0.00 0.00 0.00 9.52 0.00 0.00 8.70 0.00 2.50 0.00 NA 5.88 12.50 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 4.76 NA 0.00 3.12 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor shi,RI_chrX_15786633_15786860,RE_chrX_15793108_15795563 chrX + chrX_15786474_15786860;chrX_15786603_15786860;chrX_15786615_15786860;chrX_15786200_15786860;chrX_15786394_15786860 chrX_15786285_15786860 chrX_15786861_15786960;chrX_15786192_15786199 12.20 7.14 15.79 13.79 37.50 18.18 5.71 9.52 18.37 0.00 30.00 9.38 20.00 9.09 10.00 5.00 20.00 14.29 19.35 17.95 38.46 20.00 0.00 0.00 0.00 11.11 0.00 0.00 16.67 13.33 6.67 14.29 21.05 11.54 0.00 8.33 0.00 0.00 0.00 13.79 22.22 17.50 11.11 15.79 28.57 16.67 14.29 27.27 12.20 0.00 6.67 0.00 33.33 0.00 14.29 0.00 0.00 40.00 K intron_retention CG33087,EI_chr2R_4062337_4074409 chr2R + chr2R_4112633_4112767 chr2R_4112632_4112633;chr2R_4112767_4112768 chr2R_4112506_4112632;chr2R_4112768_4113243 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.71 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13165623_13170467 chrX_13165622_13165623;chrX_13170467_13170468 chrX_13165515_13165622;chrX_13170468_13170580 0.68 0.00 0.00 3.09 0.00 0.00 1.82 1.11 1.04 0.00 2.67 0.00 1.32 2.67 0.93 1.75 0.00 1.41 1.22 0.00 0.00 3.48 1.66 0.00 3.75 0.00 0.00 10.00 8.45 0.68 1.00 0.00 0.00 2.26 1.00 3.19 0.00 0.00 0.79 0.00 0.00 1.78 0.00 1.89 0.00 1.94 0.00 0.00 1.76 1.04 0.62 2.30 0.00 0.00 1.68 0.00 0.00 0.00 K intron_retention I_chr2R_5857058_5857250,I_chr2R_5857078_5857245,CG12134 chr2R + chr2R_5858927_5858981 chr2R_5858926_5858927;chr2R_5858981_5858982 chr2R_5858680_5858926;chr2R_5858982_5859948 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.29 NA 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 11.76 4.76 8.70 NA 0.00 NA 0.00 0.00 0.00 NA 2.27 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 K alternative_donor RhoBTB,RI_chr3L_20370940_20371530,I_chr3L_20374844_20374891 chr3L + chr3L_20369702_20371530 chr3L_20370940_20371530 chr3L_20371531_20371630;chr3L_20369433_20369701 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA K jcn_only_AA CG10424,RI_chr3L_19090338_19090405 chr3L - chr3L_19090328_19090405 chr3L_19090338_19090405 chr3L_19090406_19090505;chr3L_19090238_19090327 8.70 5.15 7.14 4.50 1.79 3.51 8.00 8.86 8.05 10.42 10.00 4.31 10.87 2.13 1.18 6.35 1.96 7.81 1.82 5.85 7.35 13.83 13.40 7.07 1.89 3.23 5.74 8.25 13.95 10.61 31.40 10.61 8.24 9.41 10.53 14.71 14.86 10.40 11.90 8.70 14.55 5.11 3.64 8.75 11.46 17.78 10.23 16.18 6.19 7.79 7.45 12.12 9.52 10.34 3.16 13.92 11.86 13.75 K alternative_donor Snr1,I_chr3R_1297469_1297546 chr3R + chr3R_1297053_1297546 chr3R_1297469_1297546 chr3R_1297547_1297646;chr3R_1296531_1297052 0.00 0.00 1.12 0.98 0.00 0.00 1.18 1.20 0.00 0.00 0.00 0.61 3.39 1.67 0.00 1.54 0.00 0.00 0.00 0.44 0.00 1.56 0.00 0.00 0.00 0.00 0.87 1.06 0.00 0.00 1.49 0.00 0.45 0.00 0.98 0.00 0.00 0.73 0.54 1.10 0.00 0.58 0.00 0.86 0.87 0.56 0.64 0.00 0.85 1.20 0.73 1.19 0.00 0.00 0.00 0.79 0.00 0.00 K intron_retention CG5989 chr3L - chr3L_8595954_8596014 chr3L_8595953_8595954;chr3L_8596014_8596015 chr3L_8595878_8595953;chr3L_8596015_8596083 6.06 0.00 1.72 7.46 0.00 0.00 3.57 6.94 5.88 0.00 5.71 6.12 2.38 2.17 7.69 11.11 10.71 2.56 5.26 7.78 4.88 15.00 0.00 7.69 0.00 5.66 12.12 6.67 13.89 5.26 12.28 4.88 3.39 6.76 7.14 6.52 5.41 7.27 8.33 8.82 11.76 3.92 0.00 0.00 7.46 4.11 8.89 1.82 8.11 7.89 0.00 6.06 4.35 9.30 10.20 7.55 5.41 8.62 K jcn_only_AA CG7082,RI_chr2L_2224527_2224586,I_chr2L_2229179_2229265 chr2L + chr2L_2220952_2223265 chr2L_2220952_2223242 chr2L_2220812_2220951;chr2L_2223266_2223633 100.00 95.00 100.00 97.96 NA 100.00 100.00 100.00 100.00 NA NA 100.00 96.30 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA NA NA 100.00 97.67 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 NA 100.00 100.00 K alternative_donor Bmcp,RI_chr3L_11714462_11715104 chr3L + chr3L_11714211_11714416 chr3L_11714292_11714416 chr3L_11714417_11714461;chr3L_11714027_11714210 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 96.30 97.92 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 96.77 96.67 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 98.28 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG6439,I_chr3R_17843815_17844345,I_chr3R_17843819_17843879 chr3R - chr3R_17843819_17844345 chr3R_17843819_17843879 chr3R_17843719_17843818;chr3R_17844346_17844438 0.00 0.00 0.00 1.45 0.00 0.00 1.30 0.00 1.64 0.00 1.61 0.90 13.33 1.59 0.00 0.00 0.00 0.00 0.00 0.00 1.12 11.67 0.00 3.90 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 1.01 0.93 0.00 0.00 0.00 0.00 0.00 2.74 2.22 0.00 1.67 0.00 0.00 5.56 1.61 0.00 0.75 1.89 1.89 1.64 0.00 0.00 1.56 1.49 1.56 0.00 K intron_retention CREF_chr3R_5589662_5589762,CG8481 chr3R + chr3R_5593863_5594644 chr3R_5593862_5593863;chr3R_5594644_5594645 chr3R_5593583_5593862;chr3R_5594645_5594706 6.90 6.25 6.52 7.69 7.69 5.88 6.90 6.82 8.05 6.90 24.24 5.63 9.68 0.00 10.87 10.00 4.55 0.00 5.56 7.00 0.00 24.14 8.51 3.77 6.67 0.00 9.52 12.50 7.69 10.53 5.26 5.88 6.52 8.93 0.00 5.88 3.90 6.98 7.55 11.24 4.55 2.90 10.53 14.63 4.88 10.53 9.38 6.90 8.77 6.25 7.84 10.87 6.45 0.00 6.67 2.78 2.22 7.27 N cassette PMCA,I_chr4_371836_372509,I_chr4_373671_374568,I_chr4_376108_379519 chr4 - chr4_371317_372509 chr4_371317_371390;chr4_371836_372509 chr4_371391_371835 chr4_371229_371316;chr4_372510_372609 100.00 100.00 100.00 89.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor MED18,CG14803,CG14805 chrX + chrX_1760172_1760241 chrX_1760172_1760218 chrX_1759942_1760171;chrX_1760242_1760528 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 1.59 0.00 0.88 3.80 4.29 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.72 0.81 0.67 1.41 0.00 0.00 0.00 0.00 0.92 0.00 0.00 1.25 0.00 0.00 0.73 0.00 0.00 1.54 0.00 0.00 0.00 0.00 K alternative_donor Fak56D,F_chr2R_15323055_15323097 chr2R - chr2R_15319898_15321006 chr2R_15319898_15320100 chr2R_15319808_15319897;chr2R_15321007_15321146 15.38 11.11 22.73 17.50 9.52 12.50 8.33 11.11 8.62 60.00 31.82 13.16 10.53 11.76 14.29 29.03 13.33 7.69 12.50 10.42 23.53 26.67 20.83 31.25 30.77 8.33 17.24 20.00 30.77 26.67 13.79 25.00 50.00 17.86 22.22 29.41 14.29 12.50 14.29 15.38 18.75 11.90 8.70 9.52 16.67 14.29 14.29 15.79 9.09 16.67 36.36 17.65 30.00 10.00 8.33 15.38 18.18 15.00 K alternative_donor TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748981_19749882;chr2R_19748981_19749899;chr2R_19748981_19749783 chr2R_19748981_19750012 chr2R_19748884_19748980;chr2R_19750013_19750013 9.38 9.09 11.43 9.23 13.79 11.11 6.06 14.46 5.43 11.11 6.25 10.71 8.57 10.53 15.91 12.00 10.26 9.52 12.00 12.50 7.32 8.82 4.35 9.76 6.06 11.63 2.56 3.85 14.71 6.06 25.00 23.33 9.38 10.61 0.00 2.70 3.70 7.14 20.93 5.63 6.12 9.64 12.12 2.56 4.17 9.76 16.00 6.00 8.75 11.43 13.64 16.13 4.00 3.57 7.27 24.14 9.30 9.09 K alternative_donor CG31038,I_chr3R_25702915_25703648,I_chr3R_25705533_25722419,I_chr3R_25727788_25727905 chr3R + chr3R_25702915_25703648;chr3R_25702989_25703648;chr3R_25702895_25703648;chr3R_25702897_25703648;chr3R_25702901_25703648;chr3R_25702838_25703648 chr3R_25702970_25703648 chr3R_25703649_25703748;chr3R_25702831_25702837 16.67 14.29 36.36 16.67 NA 25.00 33.33 16.67 8.33 33.33 NA 16.67 20.00 28.57 28.57 15.38 NA 25.00 0.00 10.34 0.00 15.79 12.50 15.38 18.18 14.29 10.00 14.29 20.00 0.00 12.50 25.00 23.08 7.69 6.25 9.09 13.33 11.11 14.29 25.00 0.00 20.00 NA 0.00 33.33 25.00 20.00 25.00 15.38 11.11 18.18 11.11 20.00 28.57 22.22 22.22 0.00 25.00 K alternative_acceptor CG15715,RI_chr3L_15829349_15830356,I_chr3L_15830026_15830356,RI_chr3L_15830030_15830191,RI_chr3L_15830229_15830356 chr3L - chr3L_15830026_15830356;chr3L_15830030_15830356 chr3L_15830229_15830356 chr3L_15830357_15830456;chr3L_15830007_15830025 0.00 0.00 0.00 2.44 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 5.56 0.00 2.94 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 1.49 0.00 0.00 0.00 3.45 3.23 0.00 0.00 0.00 0.00 K alternative_acceptor CG32016,I_chr4_972691_972763,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_972691_972763;chr4_972719_972763 chr4_972704_972763 chr4_972764_972863;chr4_972619_972690 95.74 95.83 96.43 88.10 100.00 88.24 92.68 95.83 95.16 100.00 90.48 95.74 96.77 92.59 92.00 91.67 96.30 95.65 93.94 94.92 100.00 100.00 94.59 97.22 100.00 88.24 94.44 78.57 100.00 94.74 96.67 100.00 90.91 92.98 94.74 100.00 100.00 95.65 96.30 96.88 92.31 96.00 88.89 96.15 100.00 91.30 95.45 92.86 96.23 94.74 93.75 100.00 100.00 100.00 96.88 100.00 97.30 95.45 K intron_retention blow,RI_chr2R_3470434_3470776 chr2R - chr2R_3470434_3472560 chr2R_3470433_3470434;chr2R_3472560_3472561 chr2R_3470334_3470433;chr2R_3472561_3472843 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 3.15 0.00 0.00 0.00 0.00 0.00 1.59 1.41 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention RpS27A chr2L + chr2L_10410169_10410240 chr2L_10410168_10410169;chr2L_10410240_10410241 chr2L_10408388_10410168;chr2L_10410241_10410467 100.00 100.00 100.00 100.00 100.00 100.00 82.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 80.56 100.00 100.00 100.00 70.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.48 88.24 100.00 100.00 87.04 82.50 100.00 80.00 81.32 100.00 K alternative_acceptor eIF-4a,I_chr2L_5985221_5985289 chr2L + chr2L_5985221_5985338;chr2L_5985221_5985342 chr2L_5985221_5985289 chr2L_5985121_5985220;chr2L_5985343_5985389 6.71 6.73 4.90 9.47 6.47 5.93 6.18 6.82 7.23 7.69 5.30 6.90 6.18 8.16 8.11 7.76 7.12 5.16 6.74 4.95 5.61 4.85 7.13 5.86 6.39 6.71 8.19 5.81 15.32 4.55 7.10 7.13 7.37 6.10 6.33 5.19 7.01 6.05 4.69 5.93 7.56 6.22 6.93 6.81 8.85 7.60 5.25 8.58 7.09 6.31 6.57 6.52 7.16 4.88 6.78 5.96 5.39 9.89 K intron_retention Hyperkinetic,I_chrX_10148341_10149525,I_chrX_10152994_10153223 chrX - chrX_10135770_10136866 chrX_10135769_10135770;chrX_10136866_10136867 chrX_10135451_10135769;chrX_10136867_10136901 93.54 NA NA NA NA NA 90.00 100.00 100.00 92.86 NA 83.33 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 92.31 100.00 NA 87.50 NA NA NA NA NA NA 100.00 NA 88.89 100.00 90.00 92.86 93.33 NA 90.00 NA 90.00 NA NA NA NA NA 100.00 93.75 100.00 NA NA NA NA NA NA K jcn_only_AD CG9674,I_chr3L_16793055_16793171,I_chr3L_16793055_16793190,I_chr3L_16793055_16800660 chr3L - chr3L_16793055_16793200;chr3L_16793055_16793196 chr3L_16793055_16793173 chr3L_16792955_16793054;chr3L_16793201_16793268 0.00 NA NA 0.00 NA NA 0.00 3.12 0.00 NA 0.00 NA NA NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA K alternative_donor CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27044867;chr3R_27044771_27045188;chr3R_27044771_27045257;chr3R_27044771_27045132;chr3R_27044771_27045027;chr3R_27044771_27045110;chr3R_27044771_27044831;chr3R_27044771_27044895 chr3R_27044771_27044990 chr3R_27044671_27044770;chr3R_27045258_27045273 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Nopp140,I_chr3L_21828330_21828566,I_chr3L_21828986_21829082 chr3L + chr3L_21828986_21829082 chr3L_21828985_21828986;chr3L_21829082_21829083 chr3L_21828886_21828985;chr3L_21829083_21829182 98.46 98.57 98.31 98.98 98.04 98.44 98.41 98.85 100.00 98.72 98.04 99.24 100.00 100.00 100.00 97.47 100.00 98.46 98.65 96.92 100.00 99.02 98.96 97.56 95.74 98.36 96.39 98.82 99.02 99.03 100.00 97.85 99.18 98.98 98.55 98.63 98.86 98.46 100.00 97.12 97.06 99.30 96.55 100.00 95.31 97.99 97.37 98.27 96.32 96.94 98.72 98.08 96.97 98.21 97.65 97.75 96.33 98.69 K intron_retention Aph-4 chr3R + chr3R_26876616_26876682 chr3R_26876615_26876616;chr3R_26876682_26876683 chr3R_26876374_26876615;chr3R_26876683_26876829 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.90 4.35 0.00 NA NA 0.00 0.00 0.00 NA NA NA 0.00 NA NA 0.00 7.14 NA 10.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Rap2l chr2R + chr2R_19952395_19952515 chr2R_19952394_19952395;chr2R_19952515_19952516 chr2R_19952257_19952394;chr2R_19952516_19952633 4.35 0.00 3.77 2.97 0.00 2.04 5.13 4.35 5.15 4.76 5.41 1.09 2.56 1.56 4.76 4.17 4.26 2.22 3.39 4.49 0.00 14.29 3.92 8.51 6.45 2.08 4.69 8.33 0.00 9.68 5.26 8.70 0.00 5.32 4.44 0.00 6.67 0.00 0.00 4.05 1.72 5.77 4.65 7.84 0.00 2.22 8.00 1.85 3.03 4.41 11.11 6.38 7.32 7.14 1.79 5.88 2.70 5.06 K alternative_acceptor Hph,I_chr3R_1092755_1092819 chr3R + chr3R_1092755_1092842 chr3R_1092755_1092819 chr3R_1092655_1092754;chr3R_1092843_1092919 0.00 1.15 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.56 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG12795,noncoding_704,sec5,Pdsw chr2L + chr2L_3452672_3452739 chr2L_3452672_3452723 chr2L_3452541_3452671;chr2L_3452740_3453039 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 2.70 0.00 0.00 0.00 1.22 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RecQ5 chr3L - chr3L_14623293_14623619 chr3L_14623292_14623293;chr3L_14623619_14623620 chr3L_14622841_14623292;chr3L_14623620_14624918 2.63 0.00 3.57 0.00 0.00 0.00 16.67 5.26 2.44 NA 0.00 3.70 4.00 0.00 0.00 6.06 3.70 0.00 3.45 0.00 0.00 8.70 3.57 0.00 3.23 6.45 0.00 0.00 4.35 0.00 0.00 NA 9.68 6.67 2.63 9.52 5.88 7.14 0.00 6.90 NA 3.77 0.00 5.71 NA 10.00 0.00 13.33 3.33 3.33 0.00 0.00 0.00 0.00 2.38 4.76 0.00 0.00 K intron_retention CG7766,I_chrX_8993495_8994545,I_chrX_8991338_8991387 chrX - chrX_8990859_8991387 chrX_8990858_8990859;chrX_8991387_8991388 chrX_8990799_8990858;chrX_8991388_8991487 9.09 13.33 NA 35.29 NA NA 20.00 NA 9.09 NA NA 4.35 NA NA 20.00 NA NA 12.50 NA 15.22 NA 0.00 12.12 19.23 10.00 NA 17.39 NA NA 6.25 9.09 NA 2.86 12.50 11.76 16.13 0.00 0.00 5.26 13.33 10.81 4.35 NA 11.76 0.00 8.33 3.03 0.00 21.74 0.00 12.50 NA 8.33 0.00 7.14 8.33 9.09 0.00 K intron_retention I_chr2R_4783150_4783708,Ggamma1,noncoding_5300 chr2R + chr2R_4789028_4789799 chr2R_4789027_4789028;chr2R_4789799_4789800 chr2R_4789007_4789027;chr2R_4789800_4789805 100.00 100.00 100.00 99.22 100.00 98.73 100.00 99.38 99.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.80 100.00 100.00 100.00 100.00 98.68 100.00 100.00 100.00 100.00 99.29 100.00 98.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG1354,I_chrX_9672972_9673084,I_chrX_9673026_9673084 chrX + chrX_9672947_9673084;chrX_9672972_9673084;chrX_9672967_9673084 chrX_9673026_9673084 chrX_9673085_9673184;chrX_9672926_9672946 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 1.25 0.00 0.00 1.52 0.00 0.00 0.00 1.89 0.85 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 1.49 2.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 1.43 1.00 0.00 0.00 1.22 1.64 0.00 0.00 1.25 0.00 0.00 0.00 1.41 1.98 K intron_retention 14-3-3epsilon,I_chr3R_14068632_14073155,RI_chr3R_14074062_14074138,I_chr3R_14074016_14074138 chr3R + chr3R_14073874_14073942 chr3R_14073873_14073874;chr3R_14073942_14073943 chr3R_14073693_14073873;chr3R_14073943_14074015 4.53 2.80 5.33 4.15 5.38 4.57 3.31 5.24 4.98 0.00 4.69 4.22 4.62 6.67 5.49 4.76 5.08 5.93 6.87 3.15 4.42 4.72 3.58 2.86 3.21 2.82 4.90 7.65 7.64 4.79 4.57 6.57 3.92 5.60 3.64 6.76 2.54 4.42 2.44 4.17 5.11 4.46 3.94 4.76 4.79 4.47 3.19 7.92 4.53 3.46 3.91 4.04 1.16 3.68 7.77 3.08 2.45 6.34 K alternative_donor CG14401,RI_chr2L_20870192_20870512 chr2L + chr2L_20870761_20870831 chr2L_20870773_20870831 chr2L_20870832_20870900;chr2L_20870700_20870760 5.88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.88 NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention rl,I_chr2RHet_199154_207044,RI_chr2RHet_203476_203577,RI_chr2RHet_203592_207044,I_chr2RHet_232696_247338,RI_chr2RHet_240197_247338 chr2RHet + chr2RHet_198817_198964 chr2RHet_198816_198817;chr2RHet_198964_198965 chr2RHet_198804_198816;chr2RHet_198965_199153 98.15 100.00 92.31 94.29 NA NA 98.15 97.22 95.35 NA NA 100.00 92.86 93.33 NA 97.14 NA NA 93.75 95.65 NA NA 94.74 NA 100.00 88.89 100.00 NA 100.00 NA 100.00 NA NA 100.00 87.50 100.00 NA NA NA 100.00 NA 96.30 100.00 100.00 NA 100.00 NA NA 96.15 100.00 93.33 92.31 NA NA 100.00 100.00 100.00 NA K alternative_acceptor Pcf11,RI_chr2R_10753287_10754988 chr2R - chr2R_10753272_10754988;chr2R_10753287_10754988;chr2R_10753581_10754988;chr2R_10753239_10754988 chr2R_10753557_10754988 chr2R_10754989_10755088;chr2R_10753187_10753238 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 2.38 0.00 12.90 2.78 5.00 10.00 0.00 0.00 0.00 10.00 6.67 0.00 0.00 4.76 6.67 10.00 12.50 4.88 4.17 4.00 2.94 0.00 0.00 0.00 3.57 9.09 0.00 0.00 5.88 3.23 0.00 3.70 0.00 12.50 0.00 0.00 0.00 NA 12.50 K intron_retention l(2)k01209,RI_chr2R_13310877_13311160 chr2R + chr2R_13312011_13312077 chr2R_13312010_13312011;chr2R_13312077_13312078 chr2R_13311703_13312010;chr2R_13312078_13312264 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention BtbVII,I_chr3L_3150858_3150927,I_chr3L_3151185_3151263 chr3L + chr3L_3151373_3152454 chr3L_3151372_3151373;chr3L_3152454_3152455 chr3L_3151264_3151372;chr3L_3152455_3153479 0.00 0.00 0.00 1.23 0.00 1.59 2.90 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.53 1.06 0.62 0.00 0.00 1.61 6.25 3.54 0.00 0.00 0.00 0.00 1.68 0.00 2.41 0.00 0.00 0.48 1.59 0.00 0.00 4.84 0.00 0.00 0.00 0.00 1.00 2.21 0.00 0.00 0.00 0.00 0.00 1.16 0.00 1.00 0.00 K alternative_donor mys,I_chrX_7958795_7961094 chrX + chrX_7955904_7957872;chrX_7955908_7957872;chrX_7955914_7957872;chrX_7955759_7957872;chrX_7956114_7957872;chrX_7955901_7957872;chrX_7956125_7957872 chrX_7955967_7957872 chrX_7957873_7958492;chrX_7955741_7955758 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor oho23B,I_chr2L_2856176_2856244,I_chr2L_2856573_2856630,RI_chr2L_2856673_2856772 chr2L + chr2L_2856176_2856218;chr2L_2856176_2856222 chr2L_2856176_2856246 chr2L_2856076_2856175;chr2L_2856247_2856287 99.94 99.95 99.92 99.91 100.00 100.00 99.96 99.92 99.95 100.00 99.97 99.97 99.91 99.97 99.93 99.96 99.96 99.97 99.97 99.95 99.94 99.83 99.92 99.90 99.94 99.97 99.75 98.77 99.90 100.00 99.95 100.00 100.00 99.92 99.67 99.89 99.91 99.91 99.96 100.00 100.00 99.95 99.93 99.93 99.98 99.89 99.84 99.96 99.93 99.91 99.89 99.96 99.82 99.90 99.95 99.90 99.88 99.97 K alternative_donor CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25318474_25319136;chr3R_25318474_25319163;chr3R_25318474_25319142;chr3R_25318474_25319093;chr3R_25318474_25318971;chr3R_25318474_25319004;chr3R_25318474_25319167 chr3R_25318474_25318925 chr3R_25318374_25318473;chr3R_25319168_25319224 0.57 0.55 0.59 1.04 1.20 0.69 0.83 0.57 0.62 0.79 0.89 0.66 0.00 0.82 0.56 0.72 0.77 0.70 0.69 0.73 0.00 0.00 0.67 0.29 0.50 0.65 0.44 1.19 0.00 0.00 0.81 0.69 0.00 0.98 0.60 0.75 0.61 0.56 0.47 0.29 0.00 0.26 0.74 0.53 0.46 0.43 0.47 0.94 0.34 0.00 0.41 0.57 0.51 0.42 0.56 0.85 0.39 1.06 K jcn_only_AD Gel,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_66437_66599 chr3R_66533_66599 chr3R_66600_66699;chr3R_66433_66436 1.23 1.73 2.01 1.25 2.99 1.03 1.23 0.70 1.21 1.54 1.95 1.66 2.84 0.82 0.62 0.46 1.30 0.94 0.97 0.70 1.84 2.35 0.57 1.80 1.50 0.64 2.02 0.76 5.02 0.95 1.08 1.75 0.59 2.28 1.70 0.00 3.16 1.33 1.19 1.03 0.90 1.41 1.35 1.04 0.44 0.31 1.73 0.81 1.47 0.95 1.42 0.72 1.58 0.69 0.67 1.29 1.71 0.56 N alternative_acceptor CG13900,I_chr3L_830745_830907 chr3L - chr3L_830745_830907;chr3L_830715_830907;chr3L_830729_830907 chr3L_830814_830907 chr3L_830908_831007;chr3L_830702_830714 1.52 3.03 0.00 4.41 0.00 2.33 4.76 1.14 1.05 13.64 0.00 1.28 2.44 2.22 1.75 1.45 0.00 0.00 0.00 1.96 2.27 5.77 1.89 4.08 0.00 0.00 1.54 2.86 4.35 3.23 0.34 2.86 3.92 2.30 7.41 0.00 1.43 0.00 1.49 3.45 0.00 2.15 0.00 0.00 3.03 3.70 0.00 5.41 1.39 0.00 1.52 0.00 0.00 0.00 1.79 0.00 0.00 4.88 K intron_retention Rtnl1,I_chr2L_4994995_5006383,RE_chr2L_4994997_5008180,I_chr2L_4999386_5000201,I_chr2L_5004757_5006383,I_chr2L_5004775_5006231,I_chr2L_5004775_5006381,I_chr2L_5004775_5006392,I_chr2L_5027222_5028118 chr2L - chr2L_5004208_5008180 chr2L_5004207_5004208;chr2L_5008180_5008181 chr2L_5004180_5004207;chr2L_5008181_5008280 21.05 15.38 NA 42.86 13.33 15.00 50.00 41.67 33.33 NA NA 23.08 26.67 NA 14.29 30.77 NA 16.67 NA 24.24 NA 10.00 35.29 25.00 NA NA 22.73 9.09 13.79 14.29 28.57 NA 14.29 27.78 NA NA 15.00 10.53 21.05 21.05 NA 22.58 25.00 27.27 NA 15.38 4.76 NA 19.05 6.67 30.00 NA NA NA NA NA NA NA K intron_retention Lis-1 chr2R + chr2R_12071043_12071107 chr2R_12071042_12071043;chr2R_12071107_12071108 chr2R_12070691_12071042;chr2R_12071108_12072178 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Su(var)2-HP2 chr2R - chr2R_10504863_10504932 chr2R_10504866_10504932 chr2R_10504933_10505250;chr2R_10504551_10504862 100.00 100.00 100.00 94.74 100.00 100.00 100.00 91.67 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 95.24 100.00 95.00 94.44 NA 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K alternative_acceptor Ptpmeg,I_chr3L_353688_353782,I_chr3L_355125_355175 chr3L + chr3L_355125_355198 chr3L_355125_355175 chr3L_355057_355124;chr3L_355199_355275 0.00 0.00 0.00 2.05 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 1.02 1.09 0.00 0.00 0.00 0.80 1.02 0.51 0.00 0.00 0.84 0.00 0.71 1.61 0.61 0.00 0.00 0.66 0.00 0.64 0.00 0.00 0.00 0.00 0.77 0.47 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.56 0.00 0.81 0.00 2.00 0.76 0.00 0.58 K intron_retention CG7945,RI_chr3L_15515681_15516932,RI_chr3L_15516824_15516932 chr3L - chr3L_15516565_15516932 chr3L_15516564_15516565;chr3L_15516932_15516933 chr3L_15516070_15516564;chr3L_15516933_15517032 9.52 5.77 12.50 3.70 14.29 9.09 8.22 11.54 5.26 0.00 13.16 17.46 22.86 7.55 14.58 2.56 10.42 5.56 10.61 11.94 11.11 7.69 9.43 10.61 6.25 12.20 11.11 0.00 19.23 0.00 9.52 13.33 9.26 12.00 10.00 9.68 0.00 9.52 6.67 12.99 16.22 11.96 9.26 7.55 0.00 6.35 10.53 17.65 12.36 4.17 12.24 4.00 20.00 7.14 8.06 9.76 4.17 8.05 K jcn_only_AD su(f),I_chrXHet_77570_78035 chrXHet + chrXHet_76913_77097 chrXHet_76934_77097 chrXHet_77098_77373;chrXHet_76611_76912 96.95 95.08 96.67 97.44 97.62 93.02 93.18 95.54 96.95 96.77 96.08 96.39 95.52 93.33 100.00 96.74 96.55 94.87 98.63 98.95 96.72 89.19 100.00 98.25 100.00 92.65 97.44 90.00 97.06 100.00 96.88 100.00 100.00 98.98 90.32 96.97 98.00 92.86 97.14 91.23 84.62 98.33 97.92 100.00 95.24 95.35 100.00 96.30 98.52 100.00 96.67 97.96 95.45 100.00 98.65 97.44 100.00 92.59 K alternative_donor Scamp,I_chrX_15342614_15342891,I_chrX_15343542_15343655 chrX - chrX_15343542_15343737 chrX_15343542_15343655 chrX_15343442_15343541;chrX_15343738_15343755 0.00 0.00 1.75 0.90 0.00 0.89 1.37 0.00 0.85 1.52 0.00 0.58 0.00 0.00 0.72 1.05 0.00 0.00 0.00 1.23 1.06 4.29 0.00 0.00 0.00 0.99 0.00 1.49 3.23 0.97 0.95 0.00 1.65 1.28 0.00 2.04 0.79 0.00 0.00 1.32 0.00 0.62 0.00 0.00 2.27 0.00 2.33 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 1.22 1.09 0.00 K alternative_acceptor CG34408,I_chrX_10120689_10121004 chrX + chrX_10120689_10121435;chrX_10120689_10121381 chrX_10120689_10121444 chrX_10120589_10120688;chrX_10121445_10121990 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 NA 4.35 0.00 0.00 4.76 5.00 0.00 0.00 7.14 0.00 5.56 0.00 0.00 0.00 4.55 0.00 0.00 0.00 3.70 0.00 5.00 3.33 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Mgat2,I_chr3R_25845406_25845472,I_chr3R_25845406_25846373 chr3R - chr3R_25845406_25845472;chr3R_25845406_25847371;chr3R_25845406_25847670 chr3R_25845406_25846373 chr3R_25845317_25845405;chr3R_25847671_25847898 0.00 0.00 0.00 4.35 0.00 6.67 5.56 5.88 0.00 0.00 0.00 8.33 0.00 7.69 0.00 5.88 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 7.69 7.14 6.25 6.67 0.00 0.00 5.26 0.00 3.57 0.00 0.00 4.76 0.00 0.00 0.00 0.00 5.56 0.00 0.00 4.76 0.00 0.00 0.00 0.00 3.85 0.00 4.35 0.00 0.00 0.00 5.26 0.00 0.00 0.00 N alternative_donor noncoding_14363 chr3LHet - chr3LHet_709742_709797 chr3LHet_709742_709795 chr3LHet_709691_709741;chr3LHet_709798_709832 53.13 NA NA NA NA NA 30.77 NA 47.83 NA NA 40.00 NA NA NA NA NA NA NA 100.00 NA 40.00 NA 100.00 NA NA NA NA NA NA 47.06 NA NA 25.00 NA NA NA 100.00 100.00 44.83 NA 100.00 NA 53.33 NA NA NA 52.94 100.00 NA 45.45 100.00 NA NA NA NA NA 100.00 K jcn_only_AD sli,RI_chr2R_11794739_11809143 chr2R - chr2R_11761183_11761827 chr2R_11761183_11761794 chr2R_11761040_11761182;chr2R_11761828_11761954 12.37 11.11 9.52 7.55 19.48 11.76 9.38 13.83 13.00 8.06 14.29 10.31 10.29 13.46 9.62 6.82 12.24 13.16 7.81 15.87 19.35 26.15 12.99 14.81 12.37 16.67 12.36 17.95 12.84 15.22 16.07 12.50 15.54 12.50 11.36 15.57 8.94 14.40 11.27 7.65 9.72 8.99 8.77 12.98 16.54 12.50 10.71 19.35 6.50 29.35 11.76 5.80 11.18 17.07 11.76 10.59 8.16 12.61 K alternative_acceptor asrij,MED23 chr2R + chr2R_18774772_18774832 chr2R_18774772_18774829 chr2R_18774708_18774771;chr2R_18774833_18774897 35.71 42.11 40.74 45.00 34.62 57.14 42.11 29.41 33.82 32.53 34.78 48.94 50.00 26.67 40.00 53.33 50.00 33.33 33.33 35.71 36.36 37.93 33.54 34.38 34.72 35.71 43.27 36.36 34.62 34.83 44.83 35.62 35.90 26.67 42.11 38.00 38.86 35.14 40.38 37.19 42.06 38.60 42.86 31.37 31.75 35.61 32.17 30.56 32.35 37.39 34.96 31.75 42.25 33.90 45.45 41.35 31.62 23.21 K jcn_only_AD MB8.chr3R.pasa.66,Alh,I_chr3R_2927820_2933442,RI_chr3R_2946518_2946663 chr3R - chr3R_2944771_2945183 chr3R_2944771_2945156 chr3R_2944680_2944770;chr3R_2945184_2946604 23.81 NA NA NA NA NA NA NA 20.83 NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG5033 chr2R + chr2R_13679646_13679708 chr2R_13679645_13679646;chr2R_13679708_13679709 chr2R_13679350_13679645;chr2R_13679709_13679936 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG13384 chr2L + chr2L_8384896_8386216 chr2L_8384895_8384896;chr2L_8386216_8386217 chr2L_8384754_8384895;chr2L_8386217_8386384 98.86 97.06 100.00 98.44 98.63 95.16 99.16 99.07 100.00 95.65 98.59 98.85 98.48 98.21 100.00 98.94 100.00 98.11 98.59 100.00 100.00 100.00 99.07 99.08 100.00 98.18 96.20 99.08 90.91 97.14 98.41 100.00 97.90 100.00 98.44 98.39 99.22 98.36 97.80 98.88 100.00 99.29 95.45 100.00 100.00 98.86 100.00 98.20 98.97 97.33 98.59 100.00 100.00 96.88 98.55 100.00 98.15 100.00 K alternative_donor l(2)05714,RI_chr2L_4970785_4971075,CRE_chr2L_4970785_4971082,I_chr2L_4970785_4973718,RI_chr2L_4971343_4973718,CG8892 chr2L - chr2L_4970785_4971086;chr2L_4970785_4971053 chr2L_4970785_4973718 chr2L_4970685_4970784;chr2L_4973719_4973787 0.00 0.00 0.00 16.67 25.00 20.00 0.00 16.67 0.00 0.00 25.00 0.00 20.00 0.00 0.00 0.00 0.00 20.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 16.67 0.00 0.00 16.67 0.00 0.00 0.00 0.00 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.11 0.00 K intron_retention CG40191,I_chr2RHet_391475_391828,I_chr2RHet_392279_392824 chr2RHet + chr2RHet_391927_391975 chr2RHet_391926_391927;chr2RHet_391975_391976 chr2RHet_391829_391926;chr2RHet_391976_392278 7.78 2.15 8.89 14.88 8.24 10.26 9.63 9.57 10.19 7.69 2.80 10.78 6.25 9.28 7.78 11.49 9.43 7.41 10.17 7.78 6.58 5.80 6.36 3.57 12.73 29.49 8.66 5.36 13.21 8.33 10.62 5.13 4.05 7.69 4.41 22.86 6.60 3.41 5.38 5.08 17.74 8.54 8.54 5.77 3.17 6.19 4.82 9.26 13.56 5.88 4.32 7.78 6.12 4.84 8.11 5.83 10.75 17.02 K alternative_donor CG5114 chr3L + chr3L_14976891_14977012 chr3L_14976951_14977012 chr3L_14977013_14977220;chr3L_14975948_14976890 1.06 0.00 2.74 1.10 2.04 0.00 2.86 1.09 1.06 0.00 0.00 0.00 0.00 0.00 0.00 1.28 2.00 0.00 0.00 0.79 0.00 7.46 1.67 1.27 1.96 1.69 1.37 1.47 1.28 1.59 0.00 0.00 0.75 2.22 0.00 2.27 1.23 0.00 0.00 1.83 1.12 1.80 2.22 0.00 0.00 0.00 0.00 1.09 0.91 1.22 1.33 0.00 0.00 1.59 0.00 1.23 0.00 0.00 K intron_retention par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,I_chr2R_15350149_15350210,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,I_chr2R_15355073_15356294,RI_chr2R_15355419_15356294,I_chr2R_15359251_15360944,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15348122_15358101 chr2R_15348121_15348122;chr2R_15358101_15358102 chr2R_15348022_15348121;chr2R_15358102_15358317 1.15 1.15 2.13 0.00 1.52 3.53 2.15 3.51 0.00 3.77 0.00 1.18 0.00 1.37 1.87 1.89 1.37 0.00 2.70 1.08 1.37 0.91 2.41 0.00 0.00 8.47 2.04 1.43 3.23 2.88 1.94 0.00 4.44 2.83 2.60 4.11 0.00 1.68 0.00 1.60 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 2.05 0.00 0.83 0.00 0.00 0.00 1.12 0.00 0.00 0.00 N jcn_only_AA CG34394,I_chr2L_3365674_3365965,RI_chr2L_3365677_3365965 chr2L - chr2L_3365674_3367244;chr2L_3365677_3367244 chr2L_3365976_3367244 chr2L_3367245_3367719;chr2L_3365601_3365673 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention CG9705,I_chr3L_16773492_16773604,I_chr3L_16773517_16773604,I_chr3L_16774043_16774562 chr3L + chr3L_16773517_16773604 chr3L_16773516_16773517;chr3L_16773604_16773605 chr3L_16773417_16773516;chr3L_16773605_16773704 100.00 97.06 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 95.83 100.00 96.67 100.00 100.00 97.22 100.00 97.50 100.00 99.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 97.44 98.88 100.00 100.00 97.73 100.00 100.00 100.00 97.26 97.96 100.00 100.00 100.00 100.00 100.00 100.00 98.68 98.44 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 K intron_retention CG31619 chr2L + chr2L_21717673_21719513 chr2L_21717672_21717673;chr2L_21719513_21719514 chr2L_21717561_21717672;chr2L_21719514_21719643 1.96 3.53 3.39 1.35 0.00 1.79 9.68 2.63 3.39 5.41 NA 3.18 0.00 1.67 3.23 2.25 0.00 0.00 4.44 2.92 NA 5.77 2.40 1.98 2.82 1.69 5.80 0.00 0.00 0.00 1.94 0.00 0.69 4.27 5.41 3.51 1.02 0.00 2.38 1.28 1.71 2.41 1.96 0.70 0.00 1.26 1.75 2.27 1.86 3.92 2.65 1.37 0.00 2.00 4.82 4.35 0.00 0.87 K alternative_last_exon Dbp80,E_chr3LHet_2513829_2513928 chr3LHet + chr3LHet_2455332_2473204 chr3LHet_2455332_2471057 chr3LHet_2473205_2473306 chr3LHet_2471058_2471126 chr3LHet_2455154_2455331 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 6.67 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Mnt chrX + chrX_3587966_3592777;chrX_3587966_3592372;chrX_3587966_3592774 chrX_3587966_3592150 chrX_3587244_3587965;chrX_3592778_3593060 92.21 95.83 85.29 91.67 86.67 71.43 78.79 96.30 91.43 92.11 90.62 100.00 96.88 80.77 90.70 100.00 100.00 NA 100.00 96.08 91.67 92.31 88.24 95.65 96.30 96.00 96.00 NA 96.67 91.53 89.66 NA 95.59 93.75 92.86 94.74 88.10 92.00 81.25 90.00 NA 93.06 NA 95.35 NA 90.48 NA 96.97 87.93 NA 91.30 NA NA NA 93.02 NA NA 86.67 K alternative_acceptor Atf6,noncoding_4459 chr2R + chr2R_1032364_1035705 chr2R_1032364_1035679 chr2R_1032236_1032363;chr2R_1035706_1035939 0.00 NA NA 0.00 NA NA 3.23 0.00 4.55 NA NA 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 7.14 NA NA 0.00 NA NA NA NA NA 0.00 NA 5.88 NA NA NA NA NA 0.00 2.63 NA 0.00 NA NA NA NA NA NA 0.00 K alternative_acceptor Papss chr3L + chr3L_19838529_19838634;chr3L_19838529_19838611 chr3L_19838529_19838596 chr3L_19838397_19838528;chr3L_19838635_19838730 30.38 50.00 40.00 50.00 16.67 NA 44.44 27.78 38.10 57.14 71.43 36.84 37.50 33.33 22.22 47.06 28.57 30.00 18.18 32.14 NA 16.67 23.81 38.46 36.36 50.00 50.00 57.14 25.00 20.00 30.77 NA 15.38 42.86 44.44 37.50 28.57 25.00 25.00 25.00 12.50 37.04 22.22 28.57 14.29 25.00 33.33 16.67 27.78 45.45 30.77 30.00 33.33 25.00 35.71 22.22 28.57 21.05 K jcn_only_AD d4 chr2R + chr2R_1182563_1182620;chr2R_1182573_1182620;chr2R_1182566_1182620 chr2R_1182569_1182620 chr2R_1182621_1183461;chr2R_1182302_1182562 61.68 66.67 53.61 58.87 63.33 50.68 61.54 55.05 58.11 81.25 60.24 73.44 68.57 56.06 57.33 61.68 61.11 70.00 67.19 56.63 64.94 54.37 64.08 69.72 69.01 53.12 67.23 56.96 50.54 60.00 67.21 51.43 56.36 60.19 69.35 61.64 68.12 63.83 68.33 68.49 62.35 60.54 59.26 52.13 62.61 67.01 59.09 71.43 60.94 61.90 65.74 65.00 57.80 68.75 54.55 62.38 58.89 66.22 K alternative_donor NaCP60E,I_chr2R_20805053_20805170 chr2R + chr2R_20805005_20805170;chr2R_20805053_20805170 chr2R_20805101_20805170 chr2R_20805171_20805270;chr2R_20804953_20805004 100.00 80.00 NA 100.00 NA NA NA 100.00 72.73 NA NA 81.82 NA NA NA NA 80.00 100.00 100.00 100.00 NA 100.00 83.33 83.33 NA NA NA NA NA NA 85.71 80.00 62.50 83.33 100.00 85.71 75.00 NA 100.00 100.00 NA 100.00 NA NA 75.00 100.00 NA 100.00 100.00 NA 100.00 NA 71.43 NA NA NA NA 100.00 K alternative_donor CG7369 chr3L + chr3L_22735652_22738488;chr3L_22735045_22738488 chr3L_22735120_22738488 chr3L_22738489_22739986;chr3L_22734976_22735044 7.42 NA 0.00 7.69 12.50 18.18 15.38 21.43 9.52 NA 11.11 6.67 12.50 11.11 10.00 14.29 12.50 10.00 7.69 5.00 0.00 0.00 5.56 7.69 10.00 9.09 6.25 0.00 0.00 7.14 7.69 NA 6.25 6.67 8.33 8.33 0.00 0.00 6.67 4.35 0.00 4.76 12.50 0.00 0.00 9.09 10.00 5.88 22.22 0.00 6.25 0.00 0.00 12.50 8.33 0.00 14.29 0.00 K intron_retention HP5 chrX + chrX_11351798_11352262 chrX_11351797_11351798;chrX_11352262_11352263 chrX_11350688_11351797;chrX_11352263_11352661 19.12 17.39 18.75 41.67 17.50 23.08 43.59 18.75 19.12 33.33 6.67 26.53 23.08 25.00 21.05 33.33 18.52 33.33 23.08 17.39 11.43 15.15 17.71 20.00 18.42 29.17 25.49 11.76 17.65 7.69 23.08 13.64 19.61 22.73 25.00 37.04 17.95 11.11 15.79 22.54 21.88 22.03 23.81 14.04 21.15 16.67 13.33 16.00 26.42 13.43 17.39 22.58 13.16 16.67 25.00 10.81 17.65 21.28 K alternative_donor RpS18,CG8908,EI_chr2R_16151918_16151997,I_chr2R_16151918_16152036,I_chr2R_16151938_16152065,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151918_16152036 chr2R_16151938_16152036 chr2R_16152037_16152066;chr2R_16151852_16151917 99.89 99.88 99.68 100.00 99.93 100.00 100.00 99.96 99.97 99.76 99.92 99.93 99.92 99.81 99.82 99.54 99.79 100.00 99.78 99.95 99.93 99.93 99.83 99.90 99.91 99.94 99.96 99.90 99.94 99.92 99.91 99.72 99.60 99.90 99.89 99.81 99.93 99.79 99.87 99.61 99.70 99.88 100.00 99.91 99.93 99.80 99.95 99.84 99.95 99.89 99.89 99.89 99.82 99.88 99.89 99.82 99.86 99.62 N alternative_donor CG1494 chrX + chrX_21158242_21159147;chrX_21159059_21159147 chrX_21159081_21159147 chrX_21159148_21159527;chrX_21157788_21158241 98.53 98.15 98.53 98.77 98.15 98.15 99.01 99.04 99.33 97.96 98.00 99.11 98.36 98.41 98.68 98.89 98.36 98.33 98.65 100.00 98.25 86.89 98.98 98.57 98.11 98.59 98.72 97.56 97.67 100.00 98.98 100.00 93.06 99.07 97.87 98.04 98.85 98.25 98.68 98.84 100.00 99.25 98.04 98.41 100.00 97.92 97.50 100.00 99.19 97.30 98.81 98.04 97.14 96.00 98.81 97.22 97.22 100.00 K intron_retention G9a,I_chrX_145325_145634,I_chrX_145570_145634 chrX + chrX_145325_145383 chrX_145324_145325;chrX_145383_145384 chrX_145225_145324;chrX_145384_145569 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 7.69 NA NA 0.00 NA NA 0.00 NA 0.00 NA NA NA NA NA 8.33 3.85 NA NA NA NA NA 6.67 NA NA NA K intron_retention Dyb,I_chr2R_8337305_8339173,I_chr2R_8337742_8339173,I_chr2R_8338101_8339173,I_chr2R_8348603_8351844 chr2R + chr2R_8337288_8339479 chr2R_8337287_8337288;chr2R_8339479_8339480 chr2R_8337205_8337287;chr2R_8339480_8339530 0.00 0.00 NA 6.25 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 5.00 NA NA NA 3.57 NA NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA NA NA 0.00 NA 0.00 4.00 0.00 0.00 0.00 NA 8.33 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 6.90 0.00 0.00 0.00 NA 0.00 0.00 NA N mutually_exclusive RpS5a,I_chrX_17037805_17038646,I_chrX_17037805_17039048,I_chrX_17037805_17040830,snoRNA:Psi28S-1192d,snoRNA:Psi28S-1192c,snoRNA:Psi28S-1192b,snoRNA:Psi28S-1192a,I_chrX_17038786_17039048,snoRNA:Psi28S-2876,snoRNA:Psi18S-1854c,snoRNA:Psi28S-1135f,snoRNA:Psi18S-1854b,snoRNA:Psi28S-1135e,snoRNA:Psi18S-1854a,snoRNA:Psi28S-1135d,snoRNA:Psi28S-1135c,snoRNA:Psi28S-1135b,snoRNA:Psi28S-1135a,I_chrX_17041053_17041104,I_chrX_17041234_17041901,I_chrX_17041234_17041720,RI_chrX_17041234_17041750,RI_chrX_17041234_17041760,I_chrX_17041234_17041832,I_chrX_17041234_17041844,I_chrX_17041976_17042236 chrX - chrX_17037805_17040830,chrX_17041234_17042236 chrX_17037805_17039048,chrX_17039166_17042236 chrX_17040831_17041233 chrX_17039049_17039165 chrX_17037705_17037804;chrX_17042237_17042336 25.00 NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA NA NA 12.50 NA 95.83 14.29 NA 33.33 NA NA 20.00 NA NA NA NA 33.33 NA NA 25.00 NA NA NA NA NA NA NA 33.33 NA NA NA NA NA 20.00 NA NA 25.00 NA NA NA NA NA K intron_retention CG8830 chr2R - chr2R_8320427_8320483 chr2R_8320426_8320427;chr2R_8320483_8320484 chr2R_8318941_8320426;chr2R_8320484_8321321 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 3.23 0.00 1.67 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654157,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15652351_15654272 chrX_15652350_15652351;chrX_15654272_15654273 chrX_15652263_15652350;chrX_15654273_15654284 17.65 NA NA NA NA NA 13.33 13.33 17.65 NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA K alternative_acceptor plexA,I_chr4_1035473_1035591,RI_chr4_1036247_1047588,RI_chr4_1040642_1047395,RF_chr4_1044307_1047399 chr4 - chr4_1035473_1035591 chr4_1035535_1035591 chr4_1035592_1035691;chr4_1035404_1035472 100.00 100.00 100.00 98.78 100.00 100.00 99.15 100.00 99.26 100.00 100.00 98.85 100.00 98.04 100.00 99.00 95.65 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 94.44 100.00 98.25 100.00 100.00 97.96 100.00 96.43 95.45 100.00 100.00 97.78 100.00 98.89 97.92 100.00 90.00 100.00 100.00 100.00 98.98 97.62 100.00 96.43 100.00 100.00 98.04 96.43 97.44 100.00 K alternative_acceptor Dph5,RI_chr3R_18408634_18408707,CG33107 chr3R - chr3R_18408634_18408707 chr3R_18408638_18408707 chr3R_18408708_18408807;chr3R_18408534_18408633 100.00 98.88 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.75 98.88 100.00 100.00 100.00 98.53 99.13 100.00 98.46 98.33 99.28 100.00 100.00 98.97 100.00 100.00 96.77 100.00 100.00 100.00 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.96 100.00 100.00 K alternative_donor CaMKI,I_chr4_466377_467256,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,RI_chr4_467374_467424,RI_chr4_467482_467543,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_467378_467446;chr4_467374_467446 chr4_467273_467446 chr4_467447_467481;chr4_467266_467272 0.00 0.00 0.00 14.29 NA 0.00 0.00 0.00 10.53 NA 0.00 0.00 0.00 10.00 0.00 6.25 NA 20.00 0.00 5.26 20.00 0.00 20.00 0.00 20.00 0.00 0.00 NA NA NA 0.00 NA NA 6.25 NA NA NA NA NA 11.11 NA 7.14 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA NA 11.11 0.00 14.29 NA K alternative_acceptor CG1902,CG30000,I_chr2R_5495525_5495581 chr2R + chr2R_5491271_5491373 chr2R_5491271_5491351 chr2R_5491228_5491270;chr2R_5491374_5491685 93.75 88.89 94.12 100.00 81.82 80.00 93.33 95.00 93.75 81.25 91.30 88.89 88.89 93.75 85.71 100.00 91.67 93.75 90.91 91.11 100.00 97.22 90.91 96.88 96.00 93.75 96.88 93.75 96.67 96.15 97.78 100.00 92.00 95.00 94.74 100.00 100.00 95.83 86.49 96.55 92.31 86.67 91.67 87.50 90.00 91.18 95.65 100.00 84.00 100.00 96.67 100.00 92.86 100.00 93.75 100.00 90.91 88.89 K alternative_acceptor CG5021 chr3L + chr3L_8960617_8960680 chr3L_8960617_8960665 chr3L_8960382_8960616;chr3L_8960681_8960835 36.00 36.23 32.89 42.11 31.71 43.75 38.54 38.89 39.56 34.69 38.57 38.52 34.25 28.12 34.04 37.93 34.78 38.33 40.66 37.87 37.33 32.95 37.04 36.67 36.00 47.13 34.21 42.19 37.70 32.00 34.57 31.03 40.62 36.94 34.69 34.00 37.50 32.43 33.33 29.60 29.11 39.42 42.37 35.80 32.89 35.44 34.21 36.21 35.11 44.93 35.94 40.00 31.58 28.33 37.78 35.80 37.29 30.59 K intron_retention CG4065,RI_chr2R_20024231_20024292,I_chr2R_20024873_20024921 chr2R - chr2R_20024231_20024290 chr2R_20024230_20024231;chr2R_20024290_20024291 chr2R_20024131_20024230;chr2R_20024291_20024858 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.86 NA 0.00 3.23 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.78 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention eff chr3R - chr3R_10559357_10559421 chr3R_10559356_10559357;chr3R_10559421_10559422 chr3R_10559157_10559356;chr3R_10559422_10559605 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.89 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD l(1)G0193 chrX - chrX_7837261_7839928;chrX_7837261_7837716 chrX_7837261_7837749 chrX_7836542_7837260 0.00 0.28 0.00 0.16 0.00 0.00 0.00 0.33 0.13 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.32 0.00 0.38 0.55 0.00 0.00 0.00 0.69 0.00 0.26 0.00 0.21 0.52 0.00 0.00 0.38 0.35 0.00 0.25 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Vha100-1,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24963246_24963318 chr3R_24963246_24963305 chr3R_24963074_24963245;chr3R_24963319_24963676 100.00 99.48 100.00 100.00 100.00 100.00 99.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.58 100.00 100.00 99.56 99.02 100.00 99.62 100.00 100.00 99.68 100.00 99.45 100.00 100.00 100.00 100.00 100.00 99.70 100.00 100.00 100.00 100.00 99.77 100.00 99.66 100.00 100.00 100.00 100.00 99.60 100.00 100.00 99.63 100.00 100.00 K alternative_donor sd,noncoding_23930,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15706568_15707633;chrX_15706472_15707633 chrX_15706564_15707633 chrX_15707634_15707635;chrX_15706468_15706471 62.50 NA 100.00 44.44 62.50 70.00 50.00 57.14 53.85 72.73 57.14 73.91 NA 62.50 60.00 40.00 57.14 20.00 62.50 60.00 75.00 61.54 64.29 57.14 66.67 42.86 46.15 68.42 57.89 54.55 66.67 84.62 73.91 66.67 66.67 62.50 66.67 57.14 50.00 47.62 80.00 68.75 62.50 55.56 66.67 72.73 71.43 54.84 73.33 NA 36.36 71.43 85.71 NA 63.64 57.14 NA 70.59 K multi_cassette CG3209,I_chr2R_19957751_19959513,RI_chr2R_19957766_19960227,I_chr2R_19959163_19959513 chr2R + chr2R_19957766_19960227 chr2R_19957766_19958290;chr2R_19958528_19959513;chr2R_19959748_19960227 chr2R_19958291_19958527;chr2R_19959514_19959747 chr2R_19957666_19957765;chr2R_19960228_19960327 2.31 2.27 3.70 1.77 1.72 3.45 1.08 1.61 1.26 2.53 2.94 1.19 1.00 2.27 1.40 4.82 3.49 10.39 2.88 6.11 5.06 1.49 2.56 3.68 2.06 2.42 1.31 1.52 1.48 1.98 5.68 3.19 2.47 1.88 2.17 4.11 1.18 1.48 1.21 3.38 2.88 2.65 2.56 2.50 1.63 2.42 2.31 3.30 1.97 0.80 1.32 2.47 1.02 3.09 2.14 2.46 1.49 4.76 K intron_retention CG5934,RI_chr3R_23101686_23102014 chr3R + chr3R_23099608_23099684 chr3R_23099607_23099608;chr3R_23099684_23099685 chr3R_23099364_23099607;chr3R_23099685_23100290 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 3.92 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 5.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 2.35 1.83 5.36 K intron_retention CG7185 chr3L - chr3L_8305851_8307056 chr3L_8305850_8305851;chr3L_8307056_8307057 chr3L_8305384_8305850;chr3L_8307057_8307776 1.11 0.00 0.00 3.39 0.00 0.00 0.00 3.45 1.11 0.00 0.00 1.79 4.44 0.00 0.00 15.00 0.00 0.00 2.27 3.60 0.00 0.00 2.44 1.74 0.00 0.00 0.00 3.12 4.65 2.74 2.38 0.00 2.60 0.00 3.70 2.00 0.97 2.35 0.81 3.37 1.49 2.46 0.00 0.00 1.94 2.60 0.00 5.26 3.09 0.00 1.98 0.00 2.82 1.15 1.47 0.00 0.00 0.00 K jcn_only_AD MB8.chr3R.pasa.66,CG1091,RI_chr3R_2910204_2910255,RI_chr3R_2910490_2910686,RI_chr3R_2911041_2911135,RI_chr3R_2946518_2946663 chr3R - chr3R_2910204_2910264 chr3R_2910204_2910255 chr3R_2910104_2910203;chr3R_2910265_2910355 4.96 7.69 5.41 7.81 4.08 6.06 6.90 4.21 5.13 4.65 3.12 5.74 5.88 5.77 13.51 3.23 10.53 7.41 10.94 5.48 4.76 2.38 3.81 3.23 7.27 7.50 4.76 12.82 3.85 3.33 8.62 1.61 1.02 6.33 3.16 3.33 3.64 4.50 5.26 4.96 1.47 4.12 6.38 4.04 3.49 4.31 5.47 5.83 3.48 6.00 0.68 7.25 0.99 5.17 5.26 4.95 6.12 4.21 K jcn_only_AA CG17698 chr3L + chr3L_23739645_23740858;chr3L_23739645_23741523;chr3L_23739645_23740972 chr3L_23739645_23741050 chr3L_23739290_23739644 0.00 0.00 NA 0.00 4.55 0.00 2.60 1.47 0.00 NA NA 0.00 3.12 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 1.56 0.00 0.00 4.17 4.76 NA 0.00 0.00 3.57 NA K intron_retention RhoGAP5A,C_chrX_5514320_5515557 chrX - chrX_5512514_5512598 chrX_5512513_5512514;chrX_5512598_5512599 chrX_5511891_5512513;chrX_5512599_5512817 0.00 0.00 0.00 NA NA 0.00 0.00 NA 3.23 0.00 NA 0.00 NA 0.00 NA 0.00 NA 0.00 NA 6.25 0.00 5.88 3.85 2.70 0.00 0.00 7.41 4.35 0.00 5.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.23 3.12 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 NA 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention X11L,chrX_17493783_17494244.0,RE_chrX_17497873_17498103 chrX + chrX_17493713_17494805 chrX_17493712_17493713;chrX_17494805_17494806 chrX_17493665_17493712;chrX_17494806_17495337 0.00 0.00 0.00 6.67 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.70 NA 0.00 0.00 0.00 0.00 3.92 7.32 0.00 0.00 4.55 0.00 8.70 11.54 0.00 0.00 0.00 0.00 6.25 0.00 9.68 0.00 0.00 0.00 0.00 NA 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K jcn_only_AD RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522912_523360;chrX_522912_523215;chrX_522912_523194;chrX_522912_523323;chrX_522912_523389 chrX_522912_523414 chrX_522849_522911;chrX_523415_523436 20.88 23.81 20.00 47.28 26.79 21.66 11.19 38.88 22.85 13.03 26.78 21.80 14.68 20.35 16.79 14.31 17.46 22.07 23.77 26.62 18.50 32.65 5.73 9.43 8.84 9.82 12.40 36.96 13.52 18.51 21.43 39.14 21.88 34.58 17.12 13.23 5.17 7.07 8.46 49.55 21.41 43.90 20.88 39.72 32.36 23.85 11.19 27.18 33.04 11.04 7.89 8.60 26.38 14.85 20.00 13.97 21.01 30.44 K alternative_donor CG6954,I_chr3R_18492755_18493701,I_chr3R_18492801_18502630,I_chr3R_18493099_18493701 chr3R + chr3R_18492761_18493701;chr3R_18492755_18493701;chr3R_18492801_18493701 chr3R_18492765_18493701 chr3R_18493702_18493764;chr3R_18492703_18492754 16.67 NA 0.00 NA NA NA NA 25.00 25.00 NA NA NA NA 16.67 NA 0.00 NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 14.29 NA NA NA 16.67 NA NA NA K jcn_only_AA CG9171,I_chr2L_5770886_5770950,I_chr2L_5771210_5773014,RI_chr2L_5792418_5799117,I_chr2L_5799412_5800043 chr2L - chr2L_5770886_5770950 chr2L_5770889_5770950 chr2L_5770951_5771050;chr2L_5770786_5770885 88.33 87.50 88.57 100.00 NA 77.42 91.11 85.45 90.48 93.10 91.18 89.74 96.88 94.59 82.69 87.50 89.66 80.00 75.00 91.35 82.76 81.25 87.06 93.33 83.87 88.57 85.42 85.00 85.71 84.91 86.11 76.00 88.10 79.66 81.58 88.00 92.68 86.21 91.89 92.71 NA 91.55 100.00 89.13 NA 90.00 90.00 88.07 81.82 90.91 94.12 92.50 94.12 81.82 92.86 96.77 85.71 82.69 K alternative_acceptor Iswi chr2R + chr2R_8524243_8524328;chr2R_8524243_8524348 chr2R_8524243_8524316 chr2R_8524226_8524242;chr2R_8524349_8524495 6.45 0.00 2.63 5.95 4.00 0.00 8.22 3.03 3.42 11.76 0.00 6.35 5.26 10.81 6.98 7.69 4.35 6.45 3.64 6.41 3.70 15.79 7.50 0.00 16.67 16.22 9.52 18.18 33.33 0.00 9.09 8.33 18.75 4.55 9.52 26.67 4.88 9.52 0.00 8.70 NA 6.85 7.14 5.13 NA 0.00 0.00 15.79 8.22 11.11 0.00 8.70 NA NA 6.25 5.56 0.00 11.11 K intron_retention Cp190,I_chr3R_11100788_11100846,F_chr3R_11104164_11104239 chr3R - chr3R_11098714_11098778 chr3R_11098713_11098714;chr3R_11098778_11098779 chr3R_11097773_11098713;chr3R_11098779_11099778 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.90 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor ced-6,I_chr2R_5324717_5324924,I_chr2R_5328640_5328696 chr2R - chr2R_5324304_5324924 chr2R_5324717_5324924 chr2R_5324925_5325024;chr2R_5323867_5324303 0.12 0.26 0.21 0.65 0.00 0.26 0.57 0.33 0.44 0.00 0.00 0.12 0.22 0.00 0.20 0.23 0.36 0.23 0.27 0.11 0.00 0.00 0.00 0.00 0.32 0.21 0.24 0.00 0.00 0.00 0.00 0.38 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.34 0.55 0.12 0.36 0.00 0.00 0.00 0.00 0.00 0.13 0.28 0.19 0.00 0.00 0.00 0.19 0.28 0.28 0.00 K intron_retention RI_chr3R_5088705_5088796,Aats-trp,RI_chr3R_5090799_5091007 chr3R - chr3R_5092252_5092317 chr3R_5092251_5092252;chr3R_5092317_5092318 chr3R_5091840_5092251;chr3R_5092318_5092612 0.00 2.00 0.00 0.00 0.00 3.61 0.00 1.40 1.45 0.00 0.00 1.40 0.00 0.00 3.70 1.32 1.59 3.28 2.90 3.45 0.00 0.00 0.00 0.00 0.00 1.09 1.01 1.05 2.45 0.00 2.63 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 1.15 0.00 3.05 3.23 0.00 0.00 1.44 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4896,REI_chr2L_1179197_1179859,I_chr2L_1191535_1191648 chr2L + chr2L_1179526_1179859 chr2L_1179525_1179526;chr2L_1179859_1179860 chr2L_1179512_1179525;chr2L_1179860_1179937 13.48 6.67 5.56 NA 12.50 23.08 NA 30.43 20.00 NA NA 21.43 NA 36.36 10.53 12.50 NA NA 14.29 17.24 NA NA 8.70 13.33 NA NA 8.00 0.00 NA NA 10.34 NA NA 20.83 NA NA 8.33 9.52 10.53 9.09 NA 16.67 NA 15.00 NA NA NA 14.29 14.81 NA 13.64 NA NA NA 25.00 NA NA NA K jcn_only_AD CG32809,RI_chrX_1585391_1586471,a6,I_chrX_1589508_1589564 chrX - chrX_1589508_1589572 chrX_1589508_1589564 chrX_1589408_1589507;chrX_1589573_1589664 0.00 0.00 0.00 2.33 NA 4.00 4.76 0.00 2.13 0.00 5.00 0.00 0.00 NA 8.82 NA NA 0.00 4.76 4.69 NA 0.00 4.35 3.23 0.00 0.00 5.88 NA 2.33 2.50 0.00 NA 6.98 0.00 0.00 0.00 6.45 0.00 0.00 3.28 0.00 2.13 NA 0.00 0.00 0.00 0.00 1.89 7.32 2.94 0.00 NA 0.00 0.00 0.00 4.17 8.70 3.12 K alternative_donor CG33558,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2816779_2817459;chr2R_2816779_2817327 chr2R_2816779_2817354 chr2R_2816679_2816778;chr2R_2817460_2817510 5.41 6.82 3.23 2.63 18.75 0.00 4.76 18.52 6.15 5.41 0.00 6.67 15.38 13.04 8.57 13.64 0.00 5.88 4.00 4.76 4.35 1.92 1.35 6.35 2.63 7.14 12.50 0.00 2.86 7.04 4.35 6.45 6.25 2.17 2.33 6.67 4.50 1.85 4.26 12.35 10.81 0.00 10.00 4.35 4.41 6.06 2.70 7.55 8.70 4.30 2.00 7.69 7.50 6.90 12.90 1.61 2.86 6.67 K intron_retention Ark,I_chr2R_12909344_12909416,RI_chr2R_12912984_12913058 chr2R + chr2R_12912797_12912863 chr2R_12912796_12912797;chr2R_12912863_12912864 chr2R_12911203_12912796;chr2R_12912864_12912957 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor I_chr3L_212783_212843,Kaz1-ORFA,Kaz1-ORFB,Kaz1-ORFA_Kaz1-ORFB chr3L + chr3L_217443_217496 chr3L_217443_217490 chr3L_217400_217442;chr3L_217497_217775 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 82.35 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG1600,I_chr2R_3415482_3418090 chr2R - chr2R_3415482_3416695 chr2R_3415482_3416532 chr2R_3415382_3415481;chr2R_3416696_3416766 98.46 92.86 98.04 98.80 100.00 95.45 100.00 97.92 99.24 100.00 100.00 96.84 97.83 98.08 100.00 100.00 100.00 93.88 98.11 99.07 100.00 94.19 98.57 97.62 100.00 97.06 95.45 100.00 96.77 97.62 96.20 100.00 98.15 100.00 97.87 100.00 96.83 100.00 97.67 100.00 95.65 98.77 97.62 98.68 97.22 100.00 97.40 98.46 98.97 98.25 100.00 97.62 98.21 100.00 100.00 97.83 98.51 99.07 K intron_retention CG5059,I_chr3L_20508909_20508960,I_chr3L_20509233_20511440 chr3L - chr3L_20508721_20508824 chr3L_20508720_20508721;chr3L_20508824_20508825 chr3L_20508544_20508720;chr3L_20508825_20508886 25.00 20.00 NA 33.33 NA 14.29 NA 26.09 26.32 NA NA 23.08 42.86 NA 20.00 NA NA NA 28.57 16.67 NA 16.67 20.00 41.67 NA NA 25.00 NA 25.00 NA NA NA NA 25.00 NA NA 13.33 NA NA 36.36 NA 23.81 NA 21.05 NA NA NA 22.73 36.84 NA 30.77 NA NA NA NA NA NA 35.71 K intron_retention Psi,I_chr2R_12751549_12752073,I_chr2R_12753387_12753659 chr2R - chr2R_12751609_12752073 chr2R_12751608_12751609;chr2R_12752073_12752074 chr2R_12750179_12751608;chr2R_12752074_12752173 13.33 5.26 15.15 8.70 15.38 23.08 15.62 15.58 15.07 14.29 14.81 16.92 17.65 14.71 11.90 11.54 19.35 7.41 10.42 18.03 7.69 0.00 15.00 31.25 29.41 5.41 16.67 NA 11.43 8.47 17.24 13.79 5.56 18.18 11.11 58.33 10.71 12.50 12.90 13.21 4.65 11.27 25.93 15.38 0.00 7.55 10.53 12.68 15.71 8.33 25.00 NA NA NA 15.00 8.33 13.33 8.64 K alternative_last_exon CG7341,noncoding_13313,CG32195 chr3L + chr3L_18106282_18112890,chr3L_18106282_18112871;chr3L_18106282_18106718 chr3L_18106282_18107468 chr3L_18112891_18114107;chr3L_18106719_18107164 chr3L_18107469_18107857 chr3L_18106149_18106281 36.84 46.67 40.00 36.00 41.67 41.67 31.82 30.43 36.67 50.00 54.55 35.00 30.00 33.33 52.94 23.08 36.36 40.00 30.77 39.29 45.45 50.00 36.84 36.84 40.00 26.67 37.50 66.67 50.00 47.37 26.67 28.57 32.00 34.78 54.55 50.00 43.75 30.77 27.78 43.48 45.45 37.04 27.27 42.86 50.00 40.00 30.77 62.50 33.33 26.32 31.58 25.00 38.46 27.27 29.41 29.41 23.81 45.00 K intron_retention CG5482 chr2R - chr2R_14518584_14518637 chr2R_14518583_14518584;chr2R_14518637_14518638 chr2R_14518501_14518583;chr2R_14518638_14519135 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.76 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG7091,I_chr3R_8805200_8805246,RI_chr3R_8805541_8805680,I_chr3R_8809774_8809832 chr3R + chr3R_8805200_8805257 chr3R_8805200_8805246 chr3R_8805100_8805199;chr3R_8805258_8805346 2.01 0.00 3.08 1.61 0.00 0.00 2.38 0.00 1.30 NA 3.23 1.98 2.22 2.13 0.00 0.00 3.03 2.17 8.11 3.31 0.00 5.06 5.97 2.13 11.54 0.00 4.17 0.00 0.00 1.69 6.06 0.00 1.20 0.00 4.44 0.00 3.77 2.50 3.08 1.52 2.50 0.00 0.00 0.00 4.55 1.39 NA 2.15 2.90 2.22 2.04 NA 2.63 0.00 0.00 1.92 0.00 4.50 K alternative_donor sar1,I_chr3R_18185148_18185246 chr3R + chr3R_18182472_18183252;chr3R_18182490_18183252;chr3R_18182467_18183252 chr3R_18182521_18183252 chr3R_18183253_18183393;chr3R_18182460_18182466 3.31 2.99 3.10 5.39 3.49 3.19 2.07 2.06 3.57 3.85 2.63 3.16 2.20 1.16 3.05 3.16 3.61 2.08 4.61 3.01 3.33 9.68 3.45 9.09 5.13 2.83 5.13 8.00 6.06 3.03 4.62 5.66 4.17 3.31 0.00 5.71 5.45 2.94 3.12 3.92 3.03 2.06 1.09 7.04 4.55 2.82 5.80 6.38 2.13 2.27 4.84 2.22 3.57 2.86 2.61 2.44 3.61 5.41 K jcn_only_AA bip2,RI_chr4_481674_487126,RI_chr4_483128_487126,RI_chr4_486609_487126 chr4 - chr4_486609_487126;chr4_485855_487126 chr4_485942_487126 chr4_487127_487226;chr4_485750_485854 92.96 91.67 86.84 76.19 82.61 NA 92.96 90.00 92.68 NA 96.30 88.16 100.00 93.75 83.78 94.83 88.89 60.53 93.55 87.67 93.75 NA 97.14 100.00 NA 90.00 96.30 NA NA NA 90.91 NA NA 90.48 NA NA 97.62 96.67 94.29 97.62 NA 95.24 96.67 100.00 NA 91.30 86.96 NA 89.23 NA 93.94 89.66 NA NA 95.56 NA NA NA K jcn_only_AD I_chr2R_13460029_13460240,Dcr-2,I_chr2R_13466001_13466061,I_chr2R_13466001_13466072 chr2R - chr2R_13466001_13466072;chr2R_13466001_13466061 chr2R_13466001_13466058 chr2R_13465901_13466000;chr2R_13466073_13466161 93.86 98.08 91.55 90.32 93.88 92.45 91.51 94.07 94.97 89.19 96.08 97.78 95.65 94.34 95.52 88.76 95.00 91.30 92.59 93.64 100.00 95.65 100.00 93.85 90.70 82.35 90.53 89.47 93.62 91.07 89.53 90.48 92.86 96.08 95.24 100.00 96.55 96.08 98.15 91.67 NA 94.07 90.00 95.71 90.48 90.91 95.24 95.65 93.60 92.00 100.00 96.77 100.00 92.00 91.57 84.62 100.00 95.12 K jcn_only_AD Traf-like,I_chrX_16309163_16309641,I_chrX_16309212_16309689,I_chrX_16309561_16309641,I_chrX_16309561_16309689,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16309619_16309689;chrX_16309163_16309689 chrX_16309561_16309689 chrX_16309690_16309741;chrX_16309112_16309162 3.70 3.33 1.72 3.70 1.85 1.67 4.76 4.08 3.68 3.23 7.69 2.30 11.11 2.56 3.23 0.00 4.35 3.28 3.12 8.60 4.92 2.56 9.62 1.49 6.25 6.00 1.92 NA 0.00 2.78 13.10 3.70 3.85 1.27 14.63 17.50 3.91 1.72 2.08 6.78 12.50 8.00 4.35 0.00 NA 7.14 8.33 4.17 3.85 1.79 5.13 3.28 3.23 4.44 3.23 5.45 2.63 NA K intron_retention CG1572,RI_chrX_11450380_11450442,I_chrX_11450380_11452520 chrX - chrX_11450380_11452565 chrX_11450379_11450380;chrX_11452565_11452566 chrX_11450280_11450379;chrX_11452566_11452620 1.39 8.33 0.00 3.23 0.00 0.00 5.26 3.33 6.06 0.00 9.52 1.39 0.00 3.03 0.00 0.00 3.85 0.00 2.38 5.45 0.00 0.00 0.00 9.52 4.76 4.35 5.56 11.76 7.69 0.00 0.00 5.56 0.00 2.13 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.41 0.00 6.67 2.63 0.00 2.70 5.13 10.00 0.00 0.00 5.71 0.00 2.70 3.12 0.00 K jcn_only_AD CG4699 chr3R + chr3R_11624133_11624442;chr3R_11624190_11624442;chr3R_11624127_11624442 chr3R_11624200_11624442 chr3R_11624443_11624758;chr3R_11623809_11624126 55.14 55.14 46.77 26.67 22.81 40.98 60.34 52.44 48.91 57.27 53.57 53.28 62.50 50.98 51.90 52.11 50.98 50.00 41.51 54.14 37.84 60.84 53.98 62.96 61.95 57.38 56.99 53.49 57.92 64.29 53.03 52.04 44.09 53.19 58.62 51.30 57.64 63.80 60.27 73.52 56.78 48.39 72.92 60.14 50.41 55.37 72.06 45.87 54.13 56.90 66.67 64.04 59.86 60.53 55.71 57.86 64.77 50.37 K intron_retention vlc chr2R + chr2R_1590910_1590975 chr2R_1590909_1590910;chr2R_1590975_1590976 chr2R_1590556_1590909;chr2R_1590976_1591721 98.51 98.55 99.02 100.00 98.21 98.51 97.89 100.00 98.08 97.56 98.36 97.44 96.97 98.48 100.00 100.00 98.36 100.00 97.47 98.77 98.25 96.55 97.96 98.80 100.00 100.00 98.95 91.49 98.28 96.92 100.00 97.78 98.65 99.19 96.30 98.48 98.68 98.68 100.00 99.12 100.00 100.00 98.25 98.77 98.25 100.00 94.92 98.67 99.35 97.33 100.00 95.08 96.97 97.78 100.00 98.41 100.00 96.81 K jcn_only_AA Atf6,noncoding_4459 chr2R + chr2R_1032364_1035705 chr2R_1032364_1035679 chr2R_1032236_1032363;chr2R_1035706_1035939 2.22 NA NA 0.00 NA NA 4.65 0.00 3.33 NA NA 2.22 4.76 4.35 NA 2.17 NA NA NA 2.94 NA NA NA NA NA NA NA NA NA NA 10.00 NA NA 3.12 NA NA NA NA NA 3.70 NA 0.00 NA NA NA NA NA 0.00 1.92 NA 0.00 NA NA NA NA NA NA 0.00 K jcn_only_AA I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_927771_929704,CG32021,RI_chr4_928180_928245,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_928177_928245;chr4_928180_928245 chr4_928193_928245 chr4_928246_928314;chr4_928109_928176 7.32 3.57 4.44 11.11 7.32 2.08 7.45 10.20 8.89 5.08 9.76 9.41 3.45 19.35 1.82 3.28 5.88 6.12 2.44 10.53 4.17 8.06 13.86 9.30 6.15 6.06 9.33 5.45 8.11 6.59 9.48 13.64 22.45 8.05 4.55 8.00 7.45 12.12 8.74 8.59 11.54 3.26 8.00 4.79 5.66 2.44 11.76 5.77 6.49 2.27 4.44 6.15 7.69 5.00 2.08 7.27 8.51 15.22 K cassette AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9003790_9005114 chrX_9003790_9004650;chrX_9005039_9005114 chrX_9004651_9005038 chrX_9003721_9003789;chrX_9005115_9005176 100.00 100.00 100.00 88.57 100.00 94.12 93.94 95.83 97.22 92.86 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 96.15 100.00 100.00 100.00 91.67 100.00 100.00 95.45 92.86 100.00 96.55 96.15 100.00 100.00 100.00 96.88 95.24 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 91.67 100.00 94.87 100.00 95.24 100.00 100.00 100.00 94.74 100.00 100.00 100.00 K intron_retention foi,I_chr3L_8524905_8524976 chr3L + chr3L_8524905_8524966 chr3L_8524904_8524905;chr3L_8524966_8524967 chr3L_8524805_8524904;chr3L_8524967_8525974 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.40 2.54 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr2R_13334737_13336615,I_chr2R_13334737_13336769,mthl3 chr2R - chr2R_13336708_13336769 chr2R_13336707_13336708;chr2R_13336769_13336770 chr2R_13336661_13336707;chr2R_13336770_13336869 47.06 NA NA 60.00 NA NA NA NA 60.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 29.41 NA NA NA NA NA NA NA 47.06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG11873,I_chr3R_24900749_24922953,GM04590 chr3R + chr3R_24890335_24922953 chr3R_24890334_24890335;chr3R_24922953_24922954 chr3R_24889554_24890334;chr3R_24922954_24923053 0.00 0.00 0.00 0.00 0.00 NA 2.38 7.69 4.35 0.00 NA 0.00 0.00 8.00 0.00 0.00 0.00 6.25 0.00 3.85 NA 8.82 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K intron_retention CG31755 chr2L - chr2L_10001434_10002187 chr2L_10001433_10001434;chr2L_10002187_10002188 chr2L_10000750_10001433;chr2L_10002188_10002237 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA N alternative_donor CG10353,I_chrX_11775936_11778830,I_chrX_11778617_11778830,RI_chrX_11780885_11780988 chrX - chrX_11775936_11777234;chrX_11775936_11776058;chrX_11775936_11777133;chrX_11775936_11776142 chrX_11775936_11777220 chrX_11775836_11775935;chrX_11777235_11777654 29.55 23.33 38.24 40.00 38.24 25.81 26.00 16.28 23.91 13.33 16.00 20.00 13.04 14.29 45.00 26.53 31.03 25.71 35.71 29.73 23.08 28.95 29.27 30.00 36.00 45.71 29.73 47.06 37.04 30.00 30.95 33.33 29.55 30.36 28.57 37.84 24.49 26.67 27.27 21.15 40.91 31.15 35.29 33.33 39.13 31.43 16.67 22.41 27.27 38.10 22.22 31.58 21.05 35.29 32.26 26.09 21.74 23.81 K jcn_only_AD Dscam,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3249373_3251682;chr2R_3249373_3254309;chr2R_3249373_3253447;chr2R_3249373_3252522;chr2R_3249373_3252236;chr2R_3249373_3252816;chr2R_3249373_3253970;chr2R_3249373_3250836;chr2R_3249373_3251960;chr2R_3249373_3251099 chr2R_3249373_3250528 chr2R_3249273_3249372 12.36 17.86 12.77 14.06 8.00 16.13 12.50 20.69 21.95 13.64 NA 5.88 13.51 5.88 12.20 20.75 13.89 6.45 2.86 13.33 4.00 10.00 11.43 5.56 4.26 20.00 0.00 3.23 17.86 18.82 19.61 21.43 11.25 10.91 6.45 9.52 9.09 7.89 9.76 12.36 13.79 7.69 18.75 10.34 0.00 15.79 4.17 22.09 8.96 NA 8.89 15.00 12.90 NA 21.15 20.00 NA 17.39 K jcn_only_AA Pitslre,I_chr3L_20764965_20765781,I_chr3L_20764965_20766192,I_chr3L_20764965_20766212 chr3L + chr3L_20764965_20766893;chr3L_20764965_20766215 chr3L_20764965_20765704 chr3L_20764896_20764964;chr3L_20766894_20766993 31.34 28.12 NA NA NA NA NA 9.09 45.45 17.86 NA 41.18 NA NA NA 26.09 NA NA NA 23.53 NA 48.65 45.45 27.12 40.48 NA 36.17 23.08 38.64 30.77 70.97 48.15 38.00 NA 23.53 21.21 28.05 31.34 35.29 32.05 36.36 23.81 NA 51.06 21.88 25.00 23.53 16.67 21.88 25.64 38.03 48.65 28.12 37.04 50.00 42.86 28.57 36.36 K jcn_only_AD EI_chr3R_11090999_11091648,Oscp,I_chr3R_11091413_11092154 chr3R + chr3R_11090999_11091648 chr3R_11091413_11091648 chr3R_11091649_11091748;chr3R_11090899_11090998 99.60 99.42 100.00 99.78 100.00 99.32 100.00 100.00 100.00 99.33 99.77 99.45 100.00 99.70 100.00 100.00 100.00 100.00 99.73 99.87 99.20 99.30 98.62 99.48 99.53 99.69 98.92 100.00 99.24 97.39 98.03 99.64 99.64 100.00 100.00 98.56 99.86 99.39 99.16 100.00 99.10 99.75 99.64 98.67 98.99 96.47 99.15 99.60 99.50 99.44 97.95 98.82 99.25 99.51 100.00 99.73 99.88 98.93 K alternative_acceptor robl chr2R + chr2R_13344079_13344147 chr2R_13344079_13344141 chr2R_13344010_13344078;chr2R_13344148_13344210 100.00 99.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.24 99.49 100.00 100.00 100.00 99.50 100.00 100.00 100.00 99.39 100.00 100.00 99.31 99.09 98.28 98.92 99.08 98.91 98.94 100.00 100.00 98.68 100.00 100.00 100.00 100.00 99.46 99.16 100.00 100.00 96.83 99.47 100.00 100.00 100.00 100.00 98.36 100.00 99.31 100.00 100.00 100.00 100.00 100.00 99.12 100.00 100.00 99.04 K intron_retention CG30118,I_chr2R_14320281_14325712,I_chr2R_14325118_14325712 chr2R - chr2R_14320087_14320151 chr2R_14320086_14320087;chr2R_14320151_14320152 chr2R_14319950_14320086;chr2R_14320152_14320279 0.00 0.00 0.00 2.17 0.00 0.00 6.52 3.45 1.54 0.00 0.00 1.82 0.00 2.94 0.00 4.84 0.00 0.00 0.00 2.99 0.00 0.00 3.92 0.00 0.00 0.00 2.78 3.92 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 2.94 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 5.26 2.17 7.14 0.00 0.00 2.08 0.00 3.45 0.00 N cassette RhoGAP18B chrX - chrX_19040176_19047060 chrX_19040176_19044843;chrX_19045993_19047060 chrX_19044844_19045992 chrX_19040076_19040175;chrX_19047061_19047301 100.00 100.00 93.97 91.55 100.00 94.39 92.98 88.30 96.20 100.00 100.00 95.45 91.14 100.00 93.75 90.24 100.00 100.00 100.00 87.28 100.00 100.00 94.63 94.92 92.13 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 93.41 100.00 90.18 86.83 100.00 95.78 100.00 100.00 94.05 100.00 91.08 100.00 100.00 100.00 100.00 93.33 100.00 92.03 100.00 100.00 91.04 100.00 100.00 83.10 100.00 K intron_retention CG32068 chr3L + chr3L_10656669_10656749 chr3L_10656668_10656669;chr3L_10656749_10656750 chr3L_10656457_10656668;chr3L_10656750_10656827 0.00 0.00 0.00 1.62 1.11 1.43 0.00 0.78 0.71 0.00 0.00 0.76 1.50 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.90 0.00 0.00 0.00 0.58 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.38 1.06 0.93 0.00 0.00 1.33 1.16 0.39 1.23 0.77 0.00 0.00 0.00 0.63 0.00 0.00 0.63 0.00 1.58 N jcn_only_AD RpL6 chr3R - chr3R_27421324_27421603;chr3R_27421324_27421398 chr3R_27421324_27421769 chr3R_27421243_27421323;chr3R_27421770_27422070 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.34 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette CG32982,I_chr2L_9127467_9148754,EF_chr2L_9135385_9148841,F_chr2L_9149162_9154658 chr2L + chr2L_9127467_9156497 chr2L_9127467_9154658;chr2L_9154766_9156497 chr2L_9154659_9154765 chr2L_9127456_9127466;chr2L_9156498_9156594 98.21 96.30 100.00 95.45 94.44 100.00 95.65 100.00 97.44 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 90.59 96.43 96.92 92.31 100.00 98.00 100.00 89.19 100.00 100.00 96.77 98.21 100.00 100.00 95.12 98.55 97.50 98.25 94.52 88.57 100.00 92.86 98.36 91.43 95.56 97.30 92.59 100.00 97.14 94.74 96.00 100.00 97.30 100.00 100.00 100.00 96.00 N alternative_donor unc-5,E_chr2R_11238100_11240757,I_chr2R_11252444_11252570 chr2R + chr2R_11238100_11244325 chr2R_11243996_11244325 chr2R_11244326_11244514;chr2R_11238000_11238099 25.93 19.23 25.93 14.29 23.08 23.08 51.85 25.00 23.81 20.00 30.00 40.43 50.00 36.84 30.77 27.59 25.93 46.67 35.00 35.90 29.17 31.11 12.07 14.58 16.67 36.84 19.51 22.22 35.48 16.22 39.13 35.71 20.59 35.29 20.00 22.73 15.56 15.15 15.38 17.65 57.14 24.00 33.33 20.93 33.33 31.82 20.00 30.43 34.29 21.43 17.50 21.74 20.00 23.08 27.59 26.67 29.17 26.32 K intron_retention sli,RI_chr2R_11794739_11809143 chr2R - chr2R_11767585_11768871 chr2R_11767584_11767585;chr2R_11768871_11768872 chr2R_11767427_11767584;chr2R_11768872_11769078 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Tis11,CR33963 chrX + chrX_12553582_12554640 chrX_12553582_12554566 chrX_12553495_12553581;chrX_12554641_12554665 100.00 100.00 100.00 92.50 NA 100.00 100.00 100.00 99.07 100.00 NA 98.48 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 NA 94.29 100.00 100.00 100.00 96.15 NA 100.00 98.41 96.67 98.18 NA 100.00 98.11 96.97 100.00 NA NA NA 100.00 95.83 98.31 100.00 100.00 NA 100.00 100.00 98.18 100.00 NA 97.62 100.00 NA NA 100.00 100.00 100.00 100.00 N intron_retention RPA2,RI_chr2L_20925851_20925909 chr2L - chr2L_20925824_20925913 chr2L_20925823_20925824;chr2L_20925913_20925914 chr2L_20925751_20925823;chr2L_20925914_20925975 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 60.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG3609,I_chr2L_2372744_2372829,RI_chr2L_2373723_2374295 chr2L - chr2L_2372744_2372829 chr2L_2372771_2372829 chr2L_2372830_2372898;chr2L_2372644_2372743 99.58 99.50 99.28 100.00 99.35 99.25 99.26 99.41 100.00 99.04 98.11 99.64 100.00 98.29 100.00 100.00 98.91 99.11 100.00 99.67 100.00 100.00 100.00 99.58 98.36 100.00 99.51 99.50 100.00 100.00 100.00 99.19 99.25 99.43 100.00 100.00 100.00 99.52 99.71 99.50 100.00 99.23 100.00 100.00 97.24 100.00 99.57 98.31 100.00 99.20 100.00 98.98 100.00 100.00 99.35 99.59 99.25 98.73 K jcn_only_AD CG10999 chr3R + chr3R_1639660_1640660 chr3R_1640572_1640660 chr3R_1640661_1641005;chr3R_1639417_1639659 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 2.94 NA K intron_retention m-cup chr3R - chr3R_12973074_12973136 chr3R_12973073_12973074;chr3R_12973136_12973137 chr3R_12972443_12973073;chr3R_12973137_12973459 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 1.72 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 3.51 5.26 2.50 1.85 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 6.35 0.00 0.00 0.00 0.00 0.00 0.00 5.08 0.00 3.23 0.00 0.00 0.00 5.71 4.55 0.00 0.00 K jcn_only_AD CG4589,I_chr2R_20402394_20402462,I_chr2R_20402394_20402706 chr2R - chr2R_20402394_20402809;chr2R_20402394_20402753 chr2R_20402394_20402785 chr2R_20402294_20402393;chr2R_20402810_20402813 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 1.82 0.00 0.00 0.00 0.00 4.55 0.00 2.50 0.00 0.00 NA NA NA NA 0.00 NA NA 0.00 NA 0.00 NA 7.14 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 3.23 NA NA 0.00 K intron_retention CG9646 chr2R + chr2R_12936933_12937513 chr2R_12936932_12936933;chr2R_12937513_12937514 chr2R_12936779_12936932;chr2R_12937514_12937680 2.13 4.17 0.00 8.57 14.29 0.00 4.26 5.00 3.77 0.00 20.00 7.14 NA 7.14 0.00 0.00 NA 0.00 0.00 5.56 9.09 9.38 3.85 5.77 3.85 0.00 0.00 2.86 11.54 0.00 0.00 0.00 7.55 0.00 0.00 0.00 1.64 4.76 1.67 5.00 0.00 2.13 7.14 0.00 0.00 13.04 3.23 0.00 0.00 0.00 3.39 0.00 NA 0.00 4.35 3.23 0.00 NA K intron_retention PRL-1,I_chr2L_16250028_16250080 chr2L - chr2L_16247765_16248601 chr2L_16247764_16247765;chr2L_16248601_16248602 chr2L_16247711_16247764;chr2L_16248602_16248768 25.66 13.33 NA 47.06 NA NA 50.00 26.92 32.35 NA 21.05 33.33 40.00 28.57 33.33 23.08 15.38 14.29 NA 26.32 8.82 14.29 24.32 31.82 25.00 7.69 31.82 NA 14.29 28.57 40.00 NA 30.00 25.00 20.00 20.00 9.09 19.05 11.11 29.63 NA 24.24 36.36 9.52 NA NA 26.67 NA 33.33 33.33 27.27 NA 15.38 NA 35.71 NA 16.67 NA K alternative_donor CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8178392_8178458 chr2L_8178398_8178458 chr2L_8178459_8178951;chr2L_8177779_8178391 99.15 100.00 98.95 99.22 98.90 100.00 98.59 98.61 99.61 100.00 99.11 99.42 98.85 98.73 100.00 100.00 98.80 100.00 98.82 99.09 100.00 99.15 99.07 97.90 100.00 98.63 99.32 98.86 98.65 100.00 100.00 100.00 98.61 99.28 100.00 98.95 100.00 98.23 99.38 100.00 97.22 100.00 100.00 99.46 100.00 100.00 97.44 97.50 99.29 98.82 98.77 98.59 98.18 96.43 98.84 100.00 98.55 100.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2393243;chrX_2393712_2395659 chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664;chrX_2393244_2393711 chrX_2387149_2387248;chrX_2395660_2395759 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 1.12 0.00 0.00 0.00 0.00 0.00 0.00 1.39 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention l(3)82Fd,I_chr3R_1125296_1161435,I_chr3R_1125296_1175189,I_chr3R_1129905_1148709,I_chr3R_1129905_1160126,I_chr3R_1131576_1133656,I_chr3R_1131693_1133665,I_chr3R_1147660_1148709 chr3R - chr3R_1131570_1131625 chr3R_1131569_1131570;chr3R_1131625_1131626 chr3R_1131476_1131569;chr3R_1131626_1131650 90.00 NA 100.00 84.62 NA NA 92.86 87.50 92.31 NA 90.91 90.00 92.31 88.89 75.00 94.12 83.33 NA 93.33 78.57 NA NA NA NA NA 81.82 90.00 NA NA NA 92.86 NA NA 94.12 NA 100.00 NA NA NA 81.25 NA 86.36 NA 88.89 NA NA NA 91.67 92.31 88.89 87.50 NA NA NA 75.00 NA NA NA K intron_retention CG5973,I_chr2L_7441485_7443583,I_chr2L_7443388_7443583 chr2L + chr2L_7440963_7443583 chr2L_7440962_7440963;chr2L_7443583_7443584 chr2L_7440862_7440962;chr2L_7443584_7443683 10.00 33.33 NA 10.53 NA NA 0.00 8.00 10.00 NA 15.15 13.33 11.76 0.00 8.00 26.47 NA 33.33 12.50 13.64 7.69 NA 8.70 NA NA NA NA NA NA NA 7.14 NA NA 14.29 NA 0.00 8.00 NA NA NA NA 11.63 14.29 NA NA NA NA NA 7.69 0.00 NA NA NA NA 0.00 NA NA NA K jcn_only_AD I_chr2R_7165832_7165906,CG9067,CG9062,I_chr2R_7171366_7171418 chr2R - chr2R_7166631_7166695 chr2R_7166631_7166691 chr2R_7166551_7166630;chr2R_7166696_7166783 0.00 NA 0.00 0.00 NA 2.86 1.96 2.82 3.23 NA 0.00 3.92 0.00 2.94 0.00 0.00 0.00 0.00 0.00 2.33 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 3.70 0.00 NA NA 0.00 0.00 2.50 2.70 0.00 0.00 0.00 1.92 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 N intron_retention Dif,dorsal,RI_chr2L_17438018_17439189,I_chr2L_17442335_17442399,FI_chr2L_17449369_17450215,RI_chr2L_17450002_17450219 chr2L - chr2L_17438213_17441800 chr2L_17438212_17438213;chr2L_17441800_17441801 chr2L_17438150_17438212;chr2L_17441801_17441879 100.00 58.82 100.00 18.00 NA 100.00 63.16 64.00 100.00 100.00 100.00 41.38 28.00 NA 100.00 100.00 50.00 NA 100.00 70.97 100.00 62.50 66.67 100.00 100.00 NA 100.00 100.00 24.00 100.00 100.00 NA 74.07 100.00 100.00 100.00 67.86 65.00 63.64 50.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 56.25 100.00 44.00 66.67 56.25 NA NA 100.00 100.00 100.00 100.00 K cassette RhoGAP71E,I_chr3L_15583097_15589765 chr3L + chr3L_15594396_15599758;chr3L_15595616_15599758 chr3L_15595616_15597935,chr3L_15594396_15597935;chr3L_15598381_15599758 chr3L_15597936_15598380 chr3L_15594333_15594395;chr3L_15599759_15600439 26.32 27.17 24.75 46.36 19.70 13.98 30.53 30.43 26.88 6.94 28.12 21.00 30.43 26.32 29.59 21.69 24.62 25.88 31.43 22.82 33.87 31.46 33.09 36.84 33.77 14.93 28.57 33.85 23.94 15.02 25.61 21.93 24.05 27.50 22.83 27.78 28.06 27.83 41.67 15.94 12.99 24.73 21.13 25.69 24.36 22.36 36.11 16.38 25.73 26.79 31.93 24.00 27.17 26.47 21.21 40.62 45.83 21.88 K intron_retention CG9705,I_chr3L_16773492_16773604,I_chr3L_16773517_16773604,I_chr3L_16774043_16774562 chr3L + chr3L_16773492_16773604 chr3L_16773491_16773492;chr3L_16773604_16773605 chr3L_16773417_16773491;chr3L_16773605_16773704 100.00 97.62 98.11 100.00 97.44 97.78 94.59 96.94 97.22 97.92 97.06 100.00 100.00 100.00 100.00 98.33 100.00 97.96 100.00 100.00 100.00 100.00 100.00 97.73 96.67 98.39 98.11 98.00 100.00 100.00 98.15 100.00 99.36 97.30 100.00 100.00 100.00 96.88 100.00 100.00 100.00 98.94 100.00 100.00 98.78 100.00 100.00 99.21 98.84 100.00 98.15 100.00 100.00 100.00 98.15 100.00 96.77 97.17 K multi_cassette tou,I_chr2R_7468394_7468453,RI_chr2R_7474644_7475275,I_chr2R_7479681_7491857,I_chr2R_7504956_7505020 chr2R - chr2R_7474644_7475275 chr2R_7474644_7475042;chr2R_7475088_7475150;chr2R_7475217_7475275 chr2R_7475043_7475087;chr2R_7475151_7475216 chr2R_7474602_7474643;chr2R_7475276_7475375 94.29 93.33 93.75 96.67 88.89 93.33 86.36 94.29 97.14 86.67 100.00 92.59 92.31 92.86 94.44 95.65 100.00 100.00 95.65 87.23 100.00 94.74 96.43 100.00 91.67 91.67 93.75 100.00 43.24 95.45 93.33 90.00 83.33 100.00 94.74 81.82 96.00 92.31 94.74 96.77 91.67 93.33 91.67 95.83 91.67 92.31 100.00 97.50 97.14 100.00 96.30 91.67 88.89 100.00 100.00 90.00 85.71 100.00 K intron_retention Ric chr2R - chr2R_11996934_11997131 chr2R_11996933_11996934;chr2R_11997131_11997132 chr2R_11996877_11996933;chr2R_11997132_11997472 2.22 2.63 0.00 8.16 3.23 0.00 5.56 4.26 2.67 0.00 0.00 5.08 0.00 0.00 3.45 0.00 0.00 0.00 0.00 1.19 3.70 5.77 3.77 0.00 0.00 0.00 10.91 13.21 15.56 5.77 6.25 9.09 5.00 1.82 0.00 2.22 1.23 0.00 0.00 3.49 8.70 3.33 6.25 5.56 6.90 4.65 0.00 8.47 1.85 0.00 0.00 0.00 10.53 0.00 0.00 0.00 4.35 0.00 K alternative_donor Lar,I_chr2L_19644636_19644695,REI_chr2L_19702035_19702145 chr2L + chr2L_19702026_19714888 chr2L_19702035_19714888 chr2L_19714889_19714989;chr2L_19701935_19702025 100.00 100.00 NA 91.67 88.89 100.00 92.31 100.00 96.00 93.75 100.00 94.44 NA NA 87.50 100.00 NA NA NA 100.00 NA 100.00 94.74 90.91 93.33 100.00 100.00 100.00 100.00 92.31 88.89 NA 100.00 100.00 NA 90.91 100.00 100.00 100.00 100.00 NA 88.24 NA 100.00 NA NA NA 80.00 100.00 NA 92.31 100.00 NA NA 90.00 NA NA NA K cassette RI_chrX_11473566_11473702,roX2,noncoding_23149,I_chrX_11475074_11475402 chrX + chrX_11473158_11473702 chrX_11473158_11473381;chrX_11473433_11473702 chrX_11473382_11473432 chrX_11473148_11473157;chrX_11473703_11473726 13.42 NA NA 10.53 NA NA NA 9.09 15.00 NA NA 10.71 NA NA 13.33 10.00 NA NA 16.67 13.51 NA NA NA NA NA NA NA NA NA NA 14.29 NA NA 14.81 NA NA NA NA NA 10.34 NA 26.32 20.00 NA NA 23.08 NA 6.67 12.90 NA NA NA NA NA 15.00 NA NA 11.11 K intron_retention Pak,RI_chr3R_2181143_2181934 chr3R + chr3R_2183063_2183596 chr3R_2183062_2183063;chr3R_2183596_2183597 chr3R_2182472_2183062;chr3R_2183597_2183750 33.34 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention wol chr2L - chr2L_8302333_8302523 chr2L_8302332_8302333;chr2L_8302523_8302524 chr2L_8301936_8302332;chr2L_8302524_8302698 0.00 0.00 0.00 0.00 0.00 0.00 1.33 1.49 2.31 0.00 0.00 1.05 1.19 0.00 0.00 1.20 0.00 0.00 0.00 2.48 0.00 0.00 0.00 0.00 2.94 0.79 0.00 2.08 2.94 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 4.39 1.75 0.52 0.00 0.00 1.54 0.92 0.00 2.13 1.00 1.43 0.00 0.00 1.00 0.00 0.00 0.00 1.11 3.09 K jcn_only_AA Ect4,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8100050_8101738 chr3L_8100050_8101385 chr3L_8099116_8100049;chr3L_8101739_8101745 82.61 NA NA NA NA NA NA NA 95.24 NA NA 100.00 NA NA NA NA NA NA NA 80.95 NA 100.00 NA NA NA NA NA NA 82.14 NA NA NA 82.61 NA NA NA NA NA NA NA NA NA NA NA 71.43 96.43 NA NA NA NA NA NA NA NA NA NA NA 70.73 K alternative_acceptor CG31720,F_chr2L_10234951_10235484 chr2L - chr2L_10236257_10236374;chr2L_10236292_10236374 chr2L_10236287_10236374 chr2L_10236375_10236547;chr2L_10236031_10236256 81.82 NA NA NA NA NA NA 80.00 90.00 NA NA 85.71 NA NA NA NA NA NA 85.71 75.00 NA 85.71 71.43 NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA 71.43 NA 57.14 NA NA NA NA NA NA 81.82 81.82 NA NA NA NA NA NA NA NA K intron_retention Hrb98DE,RI_chr3R_24429041_24431183,RI_chr3R_24430202_24430258 chr3R + chr3R_24429421_24431183 chr3R_24429420_24429421;chr3R_24431183_24431184 chr3R_24429330_24429420;chr3R_24431184_24431283 70.00 76.47 66.67 88.24 66.67 66.67 73.68 77.42 70.73 90.91 NA 54.35 64.00 65.00 76.47 75.00 77.78 61.11 94.12 79.41 NA 92.86 61.29 59.09 90.91 NA 75.00 93.75 76.19 58.62 45.00 63.64 79.31 69.57 60.00 78.26 73.08 66.67 66.67 59.62 93.75 71.43 90.91 56.25 51.35 65.71 57.14 81.40 65.62 75.00 70.00 75.00 53.33 70.00 76.47 66.67 48.48 67.11 K intron_retention Rbcn-3A chrX - chrX_6135698_6135760 chrX_6135697_6135698;chrX_6135760_6135761 chrX_6135308_6135697;chrX_6135761_6135844 0.00 0.00 0.00 2.33 0.00 0.00 1.37 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 3.45 0.00 0.00 0.00 0.00 1.43 1.52 4.17 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 K alternative_donor Aats-val,I_chr2R_9088330_9088393,I_chr2R_9088412_9088502 chr2R + chr2R_9088330_9088502 chr2R_9088412_9088502 chr2R_9088503_9088602;chr2R_9088312_9088329 0.00 0.81 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.29 0.41 0.00 0.00 0.00 0.44 0.88 1.49 0.00 0.00 1.00 0.63 0.00 0.00 0.71 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 1.35 K jcn_only_AA CG42555,CEI_chr2L_16889126_16889216,I_chr2L_16889126_16889955,F_chr2L_16889126_16890182 chr2L + chr2L_16889126_16891457 chr2L_16889126_16889216 chr2L_16889026_16889125;chr2L_16891458_16891557 10.00 3.45 NA 0.00 8.82 2.78 6.78 10.53 6.33 NA 6.06 7.27 20.93 15.00 9.76 15.79 11.43 18.18 11.90 11.11 20.69 10.00 8.82 21.43 NA 16.67 3.33 NA NA 5.56 10.26 NA 25.71 10.34 9.52 10.34 7.02 12.00 7.14 9.09 NA 12.70 18.18 12.50 NA NA NA 7.41 16.00 NA 0.00 9.52 NA NA 7.27 NA NA NA N alternative_donor Hcf,I_chr4_391984_392875 chr4 + chr4_380985_381212;chr4_380602_381212;chr4_380911_381212;chr4_380646_381212 chr4_380607_381212 chr4_381213_381632;chr4_380600_380601 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 20.00 NA NA NA 0.00 4.76 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 K jcn_only_AD lgs,RI_chr4_463390_463489 chr4 - chr4_459792_460088 chr4_459792_460073 chr4_459601_459791;chr4_460089_462077 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 97.96 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 97.22 NA 98.90 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 96.30 NA K jcn_only_AD CG31063 chr3R - chr3R_23053664_23053789 chr3R_23053664_23053781 chr3R_23053160_23053663;chr3R_23053790_23054194 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.62 0.00 0.71 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.86 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.97 0.29 0.17 0.00 0.00 0.37 0.27 0.00 0.57 0.26 0.70 0.00 0.00 0.00 0.35 0.00 0.00 0.56 0.00 0.00 0.62 0.00 0.68 0.00 0.00 0.00 0.00 0.00 K intron_retention Rab9 chr2L + chr2L_19434862_19434922 chr2L_19434861_19434862;chr2L_19434922_19434923 chr2L_19434667_19434861;chr2L_19434923_19435842 0.00 0.00 0.00 1.92 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention enc chr3L + chr3L_3839524_3839632 chr3L_3839523_3839524;chr3L_3839632_3839633 chr3L_3839424_3839523;chr3L_3839633_3840770 0.00 0.00 2.94 6.82 2.70 3.57 0.00 0.00 0.00 0.00 5.41 2.74 6.67 3.23 3.12 0.00 0.00 0.00 0.00 6.25 0.00 1.11 0.00 0.00 2.38 8.00 0.00 5.41 12.00 0.00 6.45 NA 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 9.09 0.00 5.00 0.00 0.00 3.85 1.82 2.13 0.00 0.00 4.17 0.00 4.65 0.00 5.71 6.67 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2391522_2395659 chrX - chrX_2387249_2389073 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2389073 chrX_2387584_2387709;chrX_2388437_2388670 chrX_2387149_2387248;chrX_2389074_2389127 75.00 NA NA NA NA NA NA 75.00 57.14 NA NA 50.00 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 75.00 NA 42.86 NA 100.00 NA NA NA 80.00 60.00 NA NA NA NA NA 75.00 NA NA NA K mutually_exclusive CG11247,I_chr3L_21718596_21718659 chr3L - chr3L_21719051_21721386,chr3L_21721474_21721550 chr3L_21719051_21719262,chr3L_21720038_21721550 chr3L_21721387_21721473 chr3L_21719263_21720037 chr3L_21718941_21719050;chr3L_21721551_21721574 100.00 83.33 50.00 66.67 75.00 100.00 100.00 83.33 100.00 NA 66.67 90.00 60.00 100.00 100.00 100.00 100.00 NA 100.00 90.91 80.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 66.67 100.00 85.71 100.00 85.71 100.00 100.00 75.00 83.33 100.00 100.00 71.43 75.00 85.71 66.67 66.67 100.00 100.00 100.00 85.71 100.00 87.50 83.33 100.00 100.00 100.00 83.33 NA 100.00 87.50 K jcn_only_AD CG13602,I_chr3R_19753657_19753715 chr3R - chr3R_19753657_19753717;chr3R_19753657_19753869 chr3R_19753657_19753715 chr3R_19753602_19753656;chr3R_19753870_19754006 9.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette stai,I_chr2L_6101799_6113029,I_chr2L_6110225_6121773 chr2L + chr2L_6101799_6121773;chr2L_6110225_6121773 chr2L_6110225_6113029,chr2L_6101799_6113029;chr2L_6113114_6121773 chr2L_6113030_6113113 chr2L_6101702_6101798;chr2L_6121774_6121873 1.63 3.08 1.25 1.28 1.67 1.72 1.04 0.73 1.73 4.88 1.79 2.17 2.44 1.54 1.09 1.80 1.69 1.18 1.19 1.31 1.67 0.00 2.44 2.04 0.00 1.47 1.32 5.26 2.17 2.08 1.39 0.00 1.92 1.63 7.50 3.33 0.00 1.92 3.92 0.00 0.00 1.45 0.00 1.67 2.38 1.82 0.95 0.00 1.67 0.00 4.71 1.23 0.00 1.54 1.19 1.82 2.38 0.00 K jcn_only_AD CG33090,CEI_chr2L_14342636_14342777 chr2L + chr2L_14341577_14342777 chr2L_14342636_14342777 chr2L_14342778_14342877;chr2L_14341307_14341576 3.57 0.00 7.69 3.85 5.00 8.70 0.00 8.00 8.51 8.70 5.00 12.50 NA NA 10.53 16.67 NA 0.00 4.76 8.16 4.76 0.00 0.00 6.45 4.35 3.57 2.63 0.00 3.23 2.86 0.00 3.70 2.90 3.85 0.00 0.00 2.33 0.00 6.25 2.44 NA 4.00 NA 3.57 0.00 0.00 4.00 0.00 5.88 NA 4.65 NA NA 0.00 5.00 0.00 0.00 2.94 K intron_retention CG42593,F_chrX_7841357_7841447 chrX + chrX_7834458_7834527 chrX_7834457_7834458;chrX_7834527_7834528 chrX_7833721_7834457;chrX_7834528_7834756 6.62 0.00 5.00 13.89 10.71 0.00 4.65 3.70 8.97 0.00 7.69 3.51 17.24 0.00 7.14 21.74 8.33 0.00 4.76 6.56 12.50 11.36 7.02 0.00 0.00 3.85 6.52 0.00 8.33 0.00 6.67 NA 4.76 4.44 7.14 0.00 5.00 12.00 4.65 7.32 NA 5.97 6.67 6.25 23.08 10.00 16.00 4.65 7.46 23.08 0.00 12.50 11.11 NA 5.41 17.65 22.22 15.79 K alternative_donor CG15098,I_chr2R_14721883_14721980 chr2R - chr2R_14721902_14721983 chr2R_14721902_14721980 chr2R_14721834_14721901;chr2R_14721984_14722049 99.69 99.76 99.16 99.32 99.77 100.00 99.73 99.62 99.63 99.24 99.22 99.89 99.61 99.30 99.82 99.66 99.77 99.74 99.81 99.69 99.31 99.59 100.00 100.00 100.00 99.51 99.49 99.55 99.71 99.54 99.79 99.13 99.60 99.39 100.00 99.23 99.61 100.00 99.73 99.76 99.70 99.65 99.72 100.00 99.65 99.20 99.78 99.59 99.45 99.71 99.73 99.50 99.68 99.72 99.78 99.67 99.75 99.75 K intron_retention dlg1,I_chrX_11298230_11299306 chrX + chrX_11284574_11288255 chrX_11284573_11284574;chrX_11288255_11288256 chrX_11284551_11284573;chrX_11288256_11288279 9.79 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention how chr3R + chr3R_17868078_17868628 chr3R_17868077_17868078;chr3R_17868628_17868629 chr3R_17867960_17868077;chr3R_17868629_17869101 5.56 NA NA 7.69 NA 0.00 0.00 8.33 6.67 NA NA 9.09 NA 0.00 11.76 7.81 14.29 NA 12.12 5.56 14.29 0.00 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA 3.70 NA NA NA NA NA 0.00 0.00 11.76 10.53 NA NA 0.00 NA 0.00 11.36 NA NA NA NA NA 11.76 NA NA 0.00 K intron_retention Wwox,I_chr2L_8000434_8000497,Spn28D chr2L - chr2L_8004035_8004096 chr2L_8004034_8004035;chr2L_8004096_8004097 chr2L_8003525_8004034;chr2L_8004097_8004292 11.11 9.09 13.33 7.69 36.36 15.38 24.32 10.34 17.65 NA 0.00 27.27 14.29 16.67 14.29 28.00 18.18 33.33 25.00 14.04 5.00 0.00 7.69 8.89 11.76 16.67 12.50 0.00 6.45 11.76 12.50 0.00 0.00 18.75 4.00 0.00 15.15 0.00 11.36 10.87 0.00 19.51 15.79 29.17 14.29 10.71 0.00 9.09 18.75 9.09 10.53 5.56 0.00 0.00 13.89 6.45 1.96 0.00 N cassette Dscam,F_chr2R_3219886_3225754,I_chr2R_3219886_3226532,FI_chr2R_3219886_3227659,F_chr2R_3219886_3228449,F_chr2R_3219886_3228832,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3219886_3235353 chr2R_3219886_3221892;chr2R_3222172_3235353 chr2R_3221893_3222171 chr2R_3219786_3219885;chr2R_3235354_3235453 100.00 36.36 41.67 30.00 100.00 100.00 38.46 27.78 100.00 NA NA 100.00 9.09 100.00 100.00 100.00 NA NA NA 100.00 100.00 25.00 100.00 NA 100.00 NA 100.00 NA 47.06 100.00 100.00 NA 33.33 100.00 100.00 NA 100.00 NA 100.00 40.00 NA 100.00 NA 100.00 NA NA NA 100.00 52.94 NA 36.84 NA NA NA 42.86 22.22 100.00 NA N alternative_donor Inos,I_chr2R_3344353_3345211,noncoding_4874 chr2R - chr2R_3344353_3346113;chr2R_3344353_3345211;chr2R_3344353_3344799 chr2R_3344353_3346212 chr2R_3344253_3344352;chr2R_3346213_3346215 0.52 0.65 0.00 0.45 0.00 0.00 0.67 0.00 0.71 0.00 1.02 1.18 0.00 0.00 0.92 0.90 0.00 1.04 0.00 0.72 0.98 3.65 0.56 0.77 0.00 0.00 0.00 0.69 1.48 1.15 0.59 0.85 3.13 0.52 0.00 0.00 0.00 0.50 0.59 0.86 0.00 0.46 1.35 0.00 0.66 0.91 0.00 0.00 0.71 0.00 0.64 0.00 0.00 0.78 0.74 0.52 0.00 0.00 K intron_retention CG1598 chr2R - chr2R_3426718_3426801 chr2R_3426717_3426718;chr2R_3426801_3426802 chr2R_3426277_3426717;chr2R_3426802_3426919 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 1.06 0.00 0.00 1.79 0.00 0.00 2.47 0.00 0.00 0.00 1.00 2.78 0.83 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 2.04 1.43 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor RpL13A,I_chr3R_1450243_1451235,EI_chr3R_1450853_1451054,snoRNA:Me28S-U2134b,snoRNA:Me28S-U2134a chr3R + chr3R_1450853_1451134;chr3R_1450853_1451054 chr3R_1450853_1451235 chr3R_1450753_1450852;chr3R_1451236_1451335 99.92 99.93 99.95 99.93 99.93 99.94 99.65 99.93 99.94 99.92 99.94 99.94 99.92 99.91 99.94 99.88 99.94 99.96 99.94 99.93 99.89 99.84 99.90 99.91 99.83 99.81 99.89 99.58 99.87 99.95 99.90 99.95 99.93 99.94 99.92 99.83 99.94 99.94 99.95 99.91 99.69 99.94 99.95 99.92 99.97 99.92 99.94 99.88 99.89 99.91 99.90 99.89 99.91 99.91 99.95 99.93 99.92 99.93 K intron_retention armi,I_chr3L_3466623_3467559 chr3L + chr3L_3465853_3465908 chr3L_3465852_3465853;chr3L_3465908_3465909 chr3L_3465049_3465852;chr3L_3465909_3466241 1.59 1.33 0.00 1.47 0.00 4.44 0.78 1.85 2.14 0.00 0.00 3.33 1.16 0.00 2.78 0.76 0.00 0.00 3.23 1.59 0.00 1.92 1.45 0.00 4.41 4.88 6.52 5.63 4.26 2.44 0.00 4.40 0.00 0.00 0.00 0.00 2.80 0.00 1.50 2.70 1.82 0.96 1.06 0.00 1.67 4.97 2.11 2.88 0.61 2.15 3.48 0.00 0.00 2.53 1.68 2.20 1.90 1.90 K intron_retention Hrb87F chr3R - chr3R_9484287_9484358 chr3R_9484286_9484287;chr3R_9484358_9484359 chr3R_9484184_9484286;chr3R_9484359_9484529 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.53 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 K intron_retention AGO1,I_chr2R_9844856_9845327 chr2R - chr2R_9842355_9844677 chr2R_9842354_9842355;chr2R_9844677_9844678 chr2R_9842192_9842354;chr2R_9844678_9844855 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 5.71 NA NA 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 7.14 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K cassette CG17002 chr2R + chr2R_2874439_2875285;chr2R_2874454_2875285;chr2R_2874439_2875291 chr2R_2874439_2875142,chr2R_2874454_2875142;chr2R_2875194_2875285,chr2R_2875194_2875291 chr2R_2875143_2875193 chr2R_2874339_2874438;chr2R_2875292_2875770 12.50 10.42 6.25 11.54 7.14 13.04 20.69 12.50 8.33 10.00 12.50 13.33 18.18 14.29 7.41 17.65 4.17 12.00 15.00 9.52 12.50 31.43 12.96 10.77 16.67 18.52 12.77 18.18 13.64 15.38 10.34 11.36 22.73 9.52 12.50 9.52 12.50 14.58 15.52 11.94 18.18 8.16 12.50 10.00 15.31 14.47 8.16 12.50 10.00 10.14 11.63 10.00 7.41 13.04 10.00 6.90 8.22 5.61 K jcn_only_AA mub,RI_chr3L_21901021_21901163,I_chr3L_21908756_21909179 chr3L + chr3L_21914088_21914192;chr3L_21914088_21914153;chr3L_21914088_21914156 chr3L_21914088_21914141 chr3L_21914067_21914087;chr3L_21914193_21914427 57.89 NA NA NA NA NA NA NA 65.52 NA NA NA NA NA NA NA NA NA NA 42.31 NA 73.08 67.57 59.09 NA NA NA NA NA 50.00 NA NA 54.17 NA NA NA 57.89 55.56 65.38 56.00 NA 66.67 NA 54.55 NA NA NA 28.57 NA NA 58.33 NA NA NA NA NA NA NA K intron_retention Psn,RI_chr3L_20430213_20430358 chr3L + chr3L_20426107_20426171 chr3L_20426106_20426107;chr3L_20426171_20426172 chr3L_20425897_20426106;chr3L_20426172_20426410 0.00 0.00 0.00 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 2.66 1.10 1.10 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 K alternative_acceptor CG10527 chr2R - chr2R_16959306_16960229 chr2R_16959309_16960229 chr2R_16960230_16960298;chr2R_16958907_16959305 100.00 100.00 100.00 99.38 100.00 100.00 100.00 100.00 99.26 100.00 100.00 100.00 100.00 100.00 100.00 99.32 98.82 98.77 100.00 99.34 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.12 100.00 100.00 99.34 100.00 100.00 97.62 100.00 100.00 100.00 96.97 99.46 100.00 100.00 100.00 100.00 100.00 100.00 98.96 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 K intron_retention I_chr2L_114992_156735,RI_chr2L_114992_155545,RI_chr2L_114992_155566,I_chr2L_114992_155637,I_chr2L_114992_156175,RI_chr2L_155430_155637,CG11455,CG3436 chr2L + chr2L_155430_155566 chr2L_155429_155430;chr2L_155566_155567 chr2L_155424_155429;chr2L_155567_155645 39.44 43.84 31.33 80.72 57.58 36.11 64.17 34.53 43.86 40.62 51.67 29.71 44.93 36.36 32.65 31.08 51.28 43.06 35.16 41.06 55.77 40.91 35.71 43.75 59.52 58.46 59.65 32.14 52.63 33.33 36.47 38.78 40.00 38.40 42.42 68.00 33.77 39.53 29.55 25.86 78.12 40.76 39.34 28.36 36.21 39.44 36.76 40.82 27.78 36.36 46.81 36.00 22.41 47.92 36.84 41.33 36.19 31.76 K intron_retention az2 chr2R - chr2R_3399709_3399774 chr2R_3399708_3399709;chr2R_3399774_3399775 chr2R_3399346_3399708;chr2R_3399775_3400345 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 7.14 NA 0.00 NA NA NA 4.17 NA 0.00 0.00 0.00 NA NA 0.00 6.25 25.00 NA NA NA 0.00 0.00 NA 0.00 NA NA 0.00 10.53 NA 0.00 NA 0.00 NA 0.00 NA 12.50 0.00 0.00 NA NA NA NA NA NA 0.00 0.00 K intron_retention CG11148,I_chr4_886499_886547,RI_chr4_886921_887162 chr4 - chr4_886478_886556 chr4_886477_886478;chr4_886556_886557 chr4_886399_886477;chr4_886557_886647 53.33 60.00 81.82 88.89 42.86 41.18 73.33 53.33 51.35 NA 50.00 53.33 55.56 54.55 40.00 30.00 87.50 41.18 45.45 50.00 54.55 63.16 46.43 50.00 NA 66.67 63.16 68.00 70.00 53.33 52.94 NA 54.55 54.55 50.00 90.00 52.00 43.75 50.00 50.00 NA 53.85 41.67 38.10 NA NA NA NA 44.74 45.45 62.50 NA 75.00 NA 55.00 NA NA NA K intron_retention Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24349697_24349755 chr3R_24349696_24349697;chr3R_24349755_24349756 chr3R_24349634_24349696;chr3R_24349756_24349939 25.93 20.83 46.15 22.22 33.33 12.50 27.78 31.71 18.87 0.00 NA 26.32 25.00 30.77 37.50 27.27 NA 29.41 33.33 22.97 6.67 5.56 20.00 12.50 30.00 14.29 26.09 NA 41.67 NA NA 41.67 NA 25.93 NA 34.48 15.69 21.43 14.29 23.81 36.84 30.23 38.46 14.29 33.33 13.79 20.00 28.00 26.32 NA 17.24 30.77 18.18 13.33 23.81 21.43 26.47 70.00 K intron_retention Tango5,noncoding_22970,I_chrX_10659836_10661185 chrX - chrX_10655543_10655610 chrX_10655542_10655543;chrX_10655610_10655611 chrX_10655236_10655542;chrX_10655611_10655892 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.81 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22817556_22817713;chr2L_22817653_22817713 chr2L_22817658_22817713 chr2L_22817714_22817839;chr2L_22817553_22817555 99.00 97.50 100.00 100.00 100.00 96.77 97.65 97.44 98.13 100.00 96.15 98.99 95.71 98.21 90.74 99.14 100.00 100.00 100.00 98.63 100.00 100.00 98.41 100.00 100.00 97.50 98.39 100.00 96.97 100.00 97.62 NA NA 100.00 100.00 100.00 98.31 100.00 100.00 98.15 NA 98.92 97.83 100.00 NA 100.00 100.00 97.96 99.00 92.11 98.46 100.00 96.30 NA 96.67 100.00 100.00 94.74 K alternative_donor CG8399 chr2R + chr2R_11905307_11909393 chr2R_11905363_11909393 chr2R_11909394_11909881;chr2R_11905260_11905306 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA K intron_retention CG2701,RI_chrX_2612780_2612845,ttm50 chrX - chrX_2613125_2613197 chrX_2613124_2613125;chrX_2613197_2613198 chrX_2612846_2613124;chrX_2613198_2613800 2.56 0.00 0.00 9.52 0.00 0.00 3.92 0.00 5.00 0.00 0.00 1.92 4.00 0.00 2.63 0.00 3.45 5.71 2.70 2.70 0.00 0.00 4.11 0.00 12.90 0.00 8.00 7.27 8.51 3.33 8.47 0.00 0.00 1.92 0.00 4.35 3.49 5.77 4.05 2.99 9.52 2.78 0.00 0.00 1.39 3.77 1.69 5.26 1.89 2.70 7.55 3.33 0.00 0.00 0.00 2.13 2.56 1.72 K intron_retention asrij,MED23 chr2R + chr2R_18774772_18774829 chr2R_18774771_18774772;chr2R_18774829_18774830 chr2R_18774708_18774771;chr2R_18774830_18774897 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.93 2.22 0.00 NA 3.26 13.33 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 2.92 0.00 0.79 0.00 0.00 0.00 NA 0.00 4.65 0.00 0.00 0.00 9.09 3.37 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 K intron_retention srp,I_chr3R_11825782_11827473,I_chr3R_11826508_11826910 chr3R + chr3R_11827129_11827473 chr3R_11827128_11827129;chr3R_11827473_11827474 chr3R_11826911_11827128;chr3R_11827474_11827573 5.88 6.54 4.65 7.14 5.88 3.17 14.63 10.20 6.90 3.54 7.89 6.60 11.94 6.15 6.67 7.41 1.72 4.41 11.94 6.22 4.29 11.92 5.22 5.66 6.12 8.64 7.59 6.85 9.68 4.88 7.69 5.83 6.67 4.80 5.81 5.82 4.29 5.29 3.02 4.60 8.00 5.43 1.82 8.15 2.38 7.14 5.48 5.31 5.71 6.28 5.77 6.25 3.05 3.45 9.30 6.12 3.57 3.21 K alternative_acceptor msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585739_2586402;chr3L_2585733_2586402 chr3L_2585716_2586402 chr3L_2586403_2586502;chr3L_2585639_2585715 0.00 2.27 1.16 0.00 0.00 1.33 0.91 0.66 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 1.49 1.15 0.71 1.85 0.00 0.00 0.00 0.00 0.00 0.00 3.70 1.45 0.00 0.00 0.00 1.39 0.00 1.64 0.00 0.00 0.00 0.00 0.95 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 2.08 0.00 0.00 0.99 0.00 0.00 2.08 K intron_retention CG2938 chrX - chrX_3829390_3829762 chrX_3829389_3829390;chrX_3829762_3829763 chrX_3829293_3829389;chrX_3829763_3830184 0.00 6.25 NA 0.00 NA 0.00 3.33 0.00 2.70 0.00 NA 0.00 NA NA NA 0.00 NA NA NA 3.92 NA 0.00 1.54 0.00 0.00 NA 1.52 3.33 5.56 3.45 NA 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 6.25 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 5.88 NA NA K intron_retention CG4884 chr3R - chr3R_23783342_23783393 chr3R_23783341_23783342;chr3R_23783393_23783394 chr3R_23783106_23783341;chr3R_23783394_23783466 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 4.26 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA pAbp,I_chr2R_14027838_14028996 chr2R + chr2R_14028922_14028996 chr2R_14028922_14028992 chr2R_14028916_14028921;chr2R_14028997_14029096 94.44 96.24 96.00 93.57 97.26 93.62 95.33 92.73 96.34 99.10 94.44 94.48 94.32 94.81 96.47 95.42 97.56 88.14 95.29 96.71 86.49 93.57 94.08 93.80 90.59 95.52 94.41 92.97 92.36 94.29 96.34 84.00 95.45 94.67 95.83 94.44 91.85 96.08 95.34 94.59 90.00 95.32 95.65 95.61 94.87 89.29 92.73 93.33 97.18 93.41 90.00 89.74 91.67 97.06 92.13 99.04 89.21 84.78 K jcn_only_AD Art3,I_chr3R_11054902_11054955 chr3R - chr3R_11054902_11054955;chr3R_11054902_11054965 chr3R_11054902_11054972 chr3R_11054802_11054901;chr3R_11054973_11055055 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 NA 0.00 2.50 3.70 NA 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 NA 5.66 0.00 0.00 5.77 6.67 0.00 0.00 1.82 2.63 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 1.69 1.72 0.00 1.56 3.45 2.41 0.00 2.00 1.79 5.56 0.00 0.00 2.33 K intron_retention betaggt-II,RI_chr2L_2879966_2880043 chr2L + chr2L_2879880_2880043 chr2L_2879879_2879880;chr2L_2880043_2880044 chr2L_2879866_2879879;chr2L_2880044_2880143 0.00 0.00 0.00 6.82 0.00 6.06 2.56 7.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 8.33 0.00 0.00 0.00 0.00 1.85 10.00 4.44 0.00 0.00 0.00 0.00 2.00 0.00 0.00 2.38 0.00 0.00 4.23 0.00 0.00 0.00 0.00 0.00 1.61 2.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention pds5,I_chr2R_7922306_7922992 chr2R + chr2R_7918239_7918295 chr2R_7918238_7918239;chr2R_7918295_7918296 chr2R_7917975_7918238;chr2R_7918296_7918389 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG13937,RI_chr3L_1877663_1877719 chr3L - chr3L_1878040_1881128 chr3L_1878040_1878355;chr3L_1878560_1881128 chr3L_1878356_1878559 chr3L_1877909_1878039;chr3L_1881129_1881280 28.99 NA NA NA NA NA NA NA 41.67 NA 44.44 27.27 28.57 NA NA 26.67 NA 15.38 NA 19.05 NA NA 33.33 NA NA NA NA NA NA NA 22.22 NA NA 33.33 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA 29.41 NA NA NA 31.82 NA 22.22 NA 56.25 21.88 K cassette Hrb27C,I_chr2L_6924401_6924743 chr2L + chr2L_6921441_6923783;chr2L_6920862_6923783 chr2L_6920862_6922734,chr2L_6921441_6922734;chr2L_6922827_6923783 chr2L_6922735_6922826 chr2L_6920793_6920861;chr2L_6923784_6924400 67.93 76.47 61.38 68.68 64.65 60.47 59.73 69.93 73.86 NA 63.73 54.47 62.86 72.92 62.66 57.38 67.79 61.90 68.33 94.02 61.32 56.00 69.88 74.07 70.37 59.29 79.26 77.53 53.12 65.71 68.28 63.64 61.73 67.52 72.73 67.86 66.67 69.77 74.14 68.50 64.29 61.63 65.64 69.91 68.00 68.57 70.69 56.18 70.42 76.79 72.52 69.47 56.90 68.42 61.50 73.58 71.21 56.47 K intron_retention trio,I_chr3L_999683_1009321 chr3L - chr3L_999014_999078 chr3L_999013_999014;chr3L_999078_999079 chr3L_998824_999013;chr3L_999079_999195 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 4.35 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Patj,CG12022 chr3L + chr3L_1798924_1799009 chr3L_1798923_1798924;chr3L_1799009_1799010 chr3L_1798831_1798923;chr3L_1799010_1800699 79.17 84.62 82.35 79.17 62.50 83.33 93.33 81.82 72.00 63.64 50.00 89.47 NA 88.89 78.95 90.91 78.57 70.00 64.29 83.87 90.00 88.89 69.57 80.00 84.21 76.47 89.47 95.24 95.24 75.00 72.22 76.47 75.00 68.42 88.24 76.47 65.38 76.92 61.11 73.08 66.67 75.00 69.23 80.00 80.00 64.71 77.78 66.67 95.00 90.00 92.86 85.71 91.67 NA 78.95 88.89 81.25 84.21 K multi_cassette shot,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9753001_9753953 chr2R_9753001_9753261;chr2R_9753411_9753565;chr2R_9753632_9753953 chr2R_9753262_9753410;chr2R_9753566_9753631 chr2R_9752056_9753000;chr2R_9753954_9754137 98.51 97.30 100.00 95.59 100.00 100.00 93.33 100.00 98.20 53.33 94.29 100.00 100.00 100.00 97.30 100.00 93.02 100.00 97.06 94.32 96.00 100.00 95.08 95.83 96.77 96.55 100.00 100.00 97.06 100.00 97.56 100.00 96.88 100.00 100.00 96.15 98.53 96.55 97.50 97.67 100.00 96.04 100.00 100.00 96.77 100.00 97.87 100.00 98.51 97.37 100.00 100.00 100.00 100.00 100.00 97.73 97.87 100.00 K intron_retention CG16972 chr2L - chr2L_13198544_13198602 chr2L_13198543_13198544;chr2L_13198602_13198603 chr2L_13198345_13198543;chr2L_13198603_13200654 0.00 NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA 9.52 0.00 0.00 NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA 0.00 13.33 NA NA NA NA NA NA NA 7.14 0.00 NA NA NA NA NA NA NA NA K alternative_last_exon PGRP-LC,E_chr3L_9335847_9338977 chr3L + chr3L_9338168_9339690;chr3L_9338168_9340739 chr3L_9338168_9338708 chr3L_9339691_9339845;chr3L_9340740_9341541 chr3L_9338709_9338860 chr3L_9338000_9338167 87.50 86.67 83.33 75.00 90.00 75.00 90.91 85.71 92.86 88.89 83.33 93.33 85.71 90.91 90.91 92.86 83.33 92.86 83.33 88.46 100.00 87.50 94.74 86.67 85.71 70.00 80.00 91.67 77.78 85.71 100.00 90.00 87.50 85.71 90.00 62.50 88.24 84.62 85.71 81.25 87.50 88.89 88.89 83.33 93.75 87.50 83.33 94.12 78.95 95.45 94.44 77.78 91.67 85.71 80.00 72.73 88.00 91.67 K intron_retention osa,R_chr3R_13525411_13533475,I_chr3R_13525426_13525859 chr3R - chr3R_13525426_13525849 chr3R_13525425_13525426;chr3R_13525849_13525850 chr3R_13525326_13525425;chr3R_13525850_13525859 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911803_5913333 chr2R_5911802_5911803;chr2R_5913333_5913334 chr2R_5911703_5911802;chr2R_5913334_5913352 29.82 NA NA NA NA NA NA NA 26.32 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD GXIVsPLA2,I_chr3L_15948429_15948487,I_chr3L_15950680_15950738 chr3L + chr3L_15948410_15948487;chr3L_15948429_15948487 chr3L_15948415_15948487 chr3L_15948488_15948587;chr3L_15948329_15948409 32.50 NA NA 30.00 NA NA NA NA NA NA NA 35.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 24.14 NA NA NA NA NA NA NA NA NA K jcn_only_AA Pink1,F_chrX_6578108_6578160,F_chrX_6578108_6578165,F_chrX_6578108_6578251,I_chrX_6578115_6578251 chrX + chrX_6578104_6578160;chrX_6578104_6578165 chrX_6578104_6578251 chrX_6578015_6578103;chrX_6578252_6578260 4.76 NA NA NA NA NA NA NA 3.85 NA NA 15.00 NA NA NA 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention None chrU + chrU_1178980_1183262 chrU_1178979_1178980;chrU_1183262_1183263 96.00 98.04 97.87 95.83 97.73 89.58 96.15 100.00 97.10 96.77 97.44 96.97 98.31 95.45 94.55 96.00 93.22 97.22 94.74 94.00 97.22 94.44 93.62 90.70 100.00 95.00 100.00 100.00 96.77 96.00 98.73 89.29 52.38 91.67 77.27 92.86 98.00 96.77 97.44 98.08 90.48 94.06 100.00 98.80 95.83 100.00 97.06 96.15 95.35 88.89 92.11 92.59 91.67 82.35 98.41 91.89 93.55 85.71 N alternative_donor RpL17,I_chrX_6637182_6638207,snoRNA:Psi28S-3436b chrX - chrX_6636290_6637090 chrX_6636290_6636382 chrX_6636192_6636289;chrX_6637091_6637181 0.07 0.03 0.08 0.06 0.06 0.06 0.14 0.08 0.11 0.08 0.05 0.12 0.12 0.06 0.05 0.18 0.09 0.04 0.06 0.09 0.08 0.08 0.08 0.07 0.06 0.07 0.11 0.23 0.10 0.07 0.14 0.05 0.07 0.08 0.11 0.09 0.04 0.03 0.04 0.05 0.11 0.09 0.10 0.07 0.05 0.08 0.05 0.07 0.17 0.07 0.10 0.09 0.05 0.04 0.05 0.03 0.06 0.06 K intron_retention CG7033 chrX + chrX_8986071_8986142 chrX_8986070_8986071;chrX_8986142_8986143 chrX_8985443_8986070;chrX_8986143_8986859 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.93 0.00 0.00 0.00 0.00 0.00 0.50 0.35 0.58 0.21 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.21 0.00 0.19 0.00 0.36 0.30 0.18 0.00 0.24 0.23 0.00 0.35 0.00 0.46 K intron_retention Cyt-c-p,CG31812 chr2L + chr2L_16719977_16722008 chr2L_16719976_16719977;chr2L_16722008_16722009 chr2L_16719889_16719976;chr2L_16722009_16722728 0.27 0.00 0.10 0.31 0.00 0.13 0.32 0.84 0.59 0.00 0.25 0.53 0.18 0.40 0.11 0.45 0.28 0.00 0.11 0.30 0.27 0.26 0.77 0.55 0.00 0.24 0.88 0.00 0.00 0.00 0.49 0.39 0.00 0.53 0.85 0.42 0.00 0.00 0.52 0.49 0.00 0.31 0.32 0.00 0.00 0.73 0.00 0.82 0.33 0.47 0.65 0.00 0.00 0.00 0.48 0.20 0.19 0.65 K alternative_last_exon CG14764,noncoding_5059 chr2R - chr2R_3836026_3841406 chr2R_3839547_3841406 chr2R_3835110_3836025 chr2R_3839234_3839546 chr2R_3841407_3841816 2.04 1.54 1.59 0.00 2.04 1.61 2.94 2.22 0.78 2.50 0.00 0.83 4.76 1.85 2.67 1.33 2.22 0.00 0.00 3.88 2.13 2.82 2.83 2.30 1.92 1.72 1.18 2.04 3.85 0.00 2.86 2.78 1.33 1.10 1.64 1.59 1.14 1.37 1.03 2.70 2.22 1.55 3.92 2.53 3.45 2.53 3.28 1.49 2.54 3.17 2.15 3.57 0.00 3.64 1.30 4.55 1.64 3.33 K intron_retention Eb1,RI_chr2R_2640290_2642206,I_chr2R_2640494_2642206,I_chr2R_2641187_2642206,RI_chr2R_2641944_2642025,I_chr2R_2641954_2642206,I_chr2R_2642491_2642549 chr2R + chr2R_2640494_2640731 chr2R_2640493_2640494;chr2R_2640731_2640732 chr2R_2640394_2640493;chr2R_2640732_2641008 85.00 88.89 NA 50.00 NA NA 81.25 92.31 88.89 NA NA 92.31 NA NA 100.00 80.00 NA NA 88.89 100.00 NA 89.47 87.50 60.00 NA 80.00 85.00 88.89 NA NA 93.33 66.67 64.71 NA NA 61.54 88.89 88.89 83.33 63.64 75.00 80.00 NA 90.00 70.00 70.00 NA 88.89 78.57 66.67 76.47 90.91 NA NA 85.71 NA NA NA K cassette CG6043,I_chr2L_13267973_13268086 chr2L + chr2L_13274377_13275587 chr2L_13274377_13274651;chr2L_13274851_13275587 chr2L_13274652_13274850 chr2L_13274310_13274376;chr2L_13275588_13275628 100.00 NA NA NA NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA NA 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 90.00 NA NA 100.00 NA NA 100.00 NA NA K jcn_only_AA MED18,CG14803,CG14805 chrX + chrX_1760172_1760241 chrX_1760172_1760218 chrX_1759942_1760171;chrX_1760242_1760528 0.00 0.65 1.14 0.00 1.08 1.03 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 2.50 0.00 0.44 1.16 0.00 0.00 0.94 0.00 0.67 1.98 0.85 0.73 0.00 0.90 0.00 1.55 0.00 0.00 1.53 0.00 0.52 0.00 0.00 1.97 0.00 0.53 3.54 0.67 0.00 1.06 0.98 0.67 1.68 0.00 0.50 0.00 0.00 K alternative_donor RpL21,I_chr2L_22247722_22247782 chr2L - chr2L_22247722_22247795 chr2L_22247722_22247782 chr2L_22247622_22247721;chr2L_22247796_22247854 0.00 1.25 1.36 0.09 0.00 0.00 0.67 0.10 0.65 0.00 0.00 0.65 1.11 1.27 1.11 0.81 0.00 0.00 0.28 0.45 0.00 0.00 0.00 0.00 0.00 0.32 1.41 0.00 0.23 0.00 0.00 0.14 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 1.37 0.00 0.00 0.00 0.48 0.00 0.95 0.12 K intron_retention I_chr3R_8822346_8822403,CG7518 chr3R + chr3R_8827602_8827670 chr3R_8827601_8827602;chr3R_8827670_8827671 chr3R_8826801_8827601;chr3R_8827671_8827697 0.00 NA NA NA NA NA NA 0.00 6.67 NA NA 14.29 NA NA NA 14.29 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA K intron_retention Gli chr2L - chr2L_15760343_15760401 chr2L_15760342_15760343;chr2L_15760401_15760402 chr2L_15760210_15760342;chr2L_15760402_15760492 0.00 4.76 NA 0.00 NA NA 0.00 NA 2.94 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 3.33 NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA K cassette RnpS1,I_chr3R_5377907_5378412 chr3R + chr3R_5377907_5378412 chr3R_5377907_5377982;chr3R_5378145_5378412 chr3R_5377983_5378144 chr3R_5377807_5377906;chr3R_5378413_5378512 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.28 100.00 100.00 100.00 NA 100.00 98.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.94 100.00 98.72 100.00 98.86 100.00 100.00 100.00 100.00 100.00 100.00 98.86 100.00 K intron_retention CG2478,I_chr2L_20653491_20653552 chr2L - chr2L_20651561_20651625 chr2L_20651560_20651561;chr2L_20651625_20651626 chr2L_20650751_20651560;chr2L_20651626_20651833 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rlip,RI_chr3R_16843597_16843851,I_chr3R_16845111_16845166 chr3R + chr3R_16843797_16843851 chr3R_16843796_16843797;chr3R_16843851_16843852 chr3R_16843664_16843796;chr3R_16843852_16843951 4.67 NA NA 33.33 NA NA NA 0.00 4.35 NA NA 11.76 NA NA NA NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA 0.00 0.00 5.56 30.77 NA NA NA NA NA 6.25 0.00 0.00 NA NA NA 0.00 0.00 0.00 5.00 NA 7.69 NA NA NA NA NA NA 10.53 K intron_retention Tcp-1eta,CG8359 chr3R + chr3R_4627842_4627907 chr3R_4627841_4627842;chr3R_4627907_4627908 chr3R_4627581_4627841;chr3R_4627908_4628727 0.00 0.22 0.23 0.00 0.00 0.00 0.27 0.45 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.34 0.74 0.14 0.00 1.50 0.00 0.18 0.00 0.00 0.77 0.98 0.73 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3295176;chr2R_3294566_3295244;chr2R_3294566_3294634;chr2R_3294566_3294636;chr2R_3294566_3294638;chr2R_3294566_3295280;chr2R_3294566_3294642 chr2R_3294566_3294714 chr2R_3294491_3294565;chr2R_3295281_3295302 5.26 0.00 5.26 6.25 9.09 7.14 8.70 8.70 2.70 0.00 6.25 6.06 7.69 7.14 0.00 12.50 8.33 10.00 5.56 4.88 6.25 0.00 4.76 5.26 0.00 14.29 5.56 0.00 5.88 5.88 0.00 7.14 0.00 4.00 7.69 5.26 0.00 16.67 4.55 3.57 0.00 0.00 14.29 6.67 0.00 6.25 7.69 4.35 3.23 7.69 5.00 0.00 0.00 0.00 4.55 0.00 0.00 3.85 K intron_retention MBD-R2 chr3R - chr3R_8180568_8180640 chr3R_8180567_8180568;chr3R_8180640_8180641 chr3R_8179917_8180567;chr3R_8180641_8181777 0.00 0.00 0.00 5.48 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG9267,noncoding_2949,RI_chr2L_13445398_13445475 chr2L - chr2L_13445398_13445479 chr2L_13445398_13445455 chr2L_13445298_13445397;chr2L_13445480_13445575 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.57 0.00 NA NA 3.57 NA NA 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 K intron_retention Chd64,ens,I_chr3L_4130719_4131120 chr3L - chr3L_4115647_4122155 chr3L_4115646_4115647;chr3L_4122155_4122156 chr3L_4115305_4115646;chr3L_4122156_4122586 1.77 1.21 2.89 1.78 1.48 2.41 2.03 0.97 2.28 1.77 0.89 2.17 1.08 1.80 1.64 2.33 2.29 1.94 1.74 1.81 1.17 1.98 2.33 2.03 1.98 1.68 1.66 1.61 2.10 1.90 2.49 0.71 1.12 2.35 3.05 2.00 2.25 1.47 2.00 1.66 1.21 1.60 2.71 1.38 0.31 1.14 0.90 5.50 1.57 1.44 2.26 2.79 0.54 0.00 2.43 0.48 0.63 0.80 K intron_retention CG31716,I_chr2L_10397648_10398034 chr2L + chr2L_10399689_10399767 chr2L_10399688_10399689;chr2L_10399767_10399768 chr2L_10399595_10399688;chr2L_10399768_10400679 10.62 8.33 8.77 8.49 11.36 6.12 13.43 9.18 10.08 11.43 5.45 8.00 10.00 12.96 12.73 13.89 14.89 12.28 7.58 10.94 11.54 6.78 16.42 13.64 5.13 11.29 16.95 12.00 19.35 9.62 10.77 6.45 14.29 7.41 7.69 4.35 8.11 17.14 7.58 7.69 4.88 12.96 11.36 10.53 8.00 7.84 NA 8.47 11.11 12.24 12.90 19.51 10.71 6.67 7.94 8.89 12.77 13.04 N alternative_donor CG42231,chif,CaBP1 chr2L - chr2L_16349473_16351926 chr2L_16349473_16349986 chr2L_16347464_16349472;chr2L_16351927_16352093 5.26 8.33 5.56 8.33 5.56 4.55 12.00 7.89 6.25 6.67 5.88 5.41 4.76 5.26 5.56 7.32 4.00 3.57 7.14 4.26 4.76 2.56 3.23 4.55 4.76 3.85 7.41 21.43 4.35 3.23 6.90 7.69 3.12 6.00 2.94 5.00 4.35 5.56 3.85 4.65 4.76 4.88 4.35 4.55 11.11 4.35 10.00 3.12 7.50 12.50 2.86 4.17 9.09 20.00 3.23 12.50 22.22 6.06 K intron_retention CG4041 chrX - chrX_4810248_4810317 chrX_4810247_4810248;chrX_4810317_4810318 chrX_4809976_4810247;chrX_4810318_4810524 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 6.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 K intron_retention CG30349,lin chr2R + chr2R_4795985_4796039 chr2R_4795984_4795985;chr2R_4796039_4796040 chr2R_4795455_4795984;chr2R_4796040_4796525 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 2.17 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG32767,C_chrX_4971728_4974895,RI_chrX_4978019_4978605 chrX - chrX_4972060_4972153 chrX_4972060_4972150 chrX_4970568_4972059;chrX_4972154_4972741 96.78 100.00 100.00 95.45 96.67 90.91 92.86 98.15 98.15 95.45 96.88 98.25 96.97 100.00 97.62 92.00 97.14 77.78 100.00 98.91 NA 98.11 95.83 89.19 100.00 100.00 97.96 100.00 96.88 92.59 93.10 NA 97.33 95.24 96.43 92.59 98.36 91.67 95.83 92.59 95.24 95.06 100.00 94.74 NA 96.00 95.00 97.67 94.34 NA 100.00 100.00 NA NA 93.55 NA 100.00 96.43 K intron_retention CG32112 chr3L + chr3L_12737078_12737136 chr3L_12737077_12737078;chr3L_12737136_12737137 chr3L_12736988_12737077;chr3L_12737137_12737145 14.29 NA NA NA NA NA NA NA 14.29 NA NA 20.00 NA NA NA NA NA NA NA 17.86 NA NA 22.22 NA NA NA NA NA NA NA 23.53 NA NA NA NA NA 0.00 NA NA NA NA 5.88 NA NA NA NA NA NA 7.14 NA NA NA NA 23.53 NA 14.29 14.29 NA K intron_retention RI_chr3L_19787260_19787323,Ir76a,RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19795215_19795265 chr3L_19795214_19795215;chr3L_19795265_19795266 chr3L_19795121_19795214;chr3L_19795266_19795374 4.20 NA NA 35.71 NA NA NA 0.00 3.85 NA NA 0.00 NA NA NA 14.29 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 18.75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.55 NA NA NA NA NA NA NA NA NA K jcn_only_AA Ard1,noncoding_11800 chr3L + chr3L_9965498_9965994;chr3L_9965498_9965980 chr3L_9965498_9966021 chr3L_9965419_9965497;chr3L_9966022_9966054 9.06 NA NA 15.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.12 K intron_retention slmo,CG34179 chr2L - chr2L_6047781_6048133 chr2L_6047780_6047781;chr2L_6048133_6048134 chr2L_6046654_6047780;chr2L_6048134_6048418 97.50 100.00 100.00 100.00 92.86 95.83 95.83 95.24 96.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 89.47 100.00 97.14 96.00 100.00 100.00 97.06 100.00 97.50 95.24 96.77 95.24 96.55 100.00 96.15 96.88 100.00 100.00 96.43 97.78 94.44 100.00 93.33 100.00 96.43 92.50 96.30 94.59 100.00 95.24 100.00 95.00 96.30 100.00 100.00 95.24 100.00 100.00 K intron_retention RpS19a chrX + chrX_16531961_16532265 chrX_16531960_16531961;chrX_16532265_16532266 chrX_16531912_16531960;chrX_16532266_16532336 3.39 3.39 1.34 0.59 1.59 1.58 25.50 1.05 2.12 6.47 1.77 2.18 4.36 4.17 1.41 2.51 1.65 2.11 1.33 1.32 1.31 5.44 22.09 17.02 47.62 5.51 36.78 16.86 13.82 3.05 3.33 1.92 1.16 1.18 4.56 10.97 14.29 13.33 10.00 2.56 19.76 1.17 1.77 3.65 1.50 6.26 12.07 4.69 1.81 18.00 27.71 14.86 0.95 19.18 1.65 21.62 7.43 1.61 K alternative_donor Akt1 chr3R + chr3R_11926502_11926621;chr3R_11924988_11926621;chr3R_11925318_11926621;chr3R_11925383_11926621 chr3R_11925014_11926621 chr3R_11926622_11926719;chr3R_11924974_11924987 1.89 0.00 1.72 4.63 2.38 2.63 1.09 4.95 3.03 0.00 2.50 0.98 3.03 3.77 3.57 4.60 1.89 2.08 3.12 2.36 2.86 4.44 0.00 1.61 0.00 4.88 0.00 0.00 0.00 0.00 1.67 0.00 4.05 5.88 1.96 0.00 0.00 0.00 0.00 0.00 0.00 3.60 2.50 0.00 0.00 2.00 1.89 3.64 0.88 2.00 1.43 4.08 0.00 3.03 4.69 0.00 0.00 0.00 K intron_retention Moca-cyp chr3R + chr3R_24167182_24167906 chr3R_24167181_24167182;chr3R_24167906_24167907 chr3R_24167094_24167181;chr3R_24167907_24167936 41.67 47.62 50.00 55.56 57.14 42.31 68.75 60.00 46.88 25.00 NA 48.48 NA 53.33 54.17 28.57 56.25 41.67 52.63 35.42 53.85 15.15 40.62 41.67 38.46 NA 46.15 46.67 31.58 33.33 80.00 9.09 7.84 46.88 29.17 20.00 33.33 39.13 46.88 39.47 37.93 56.25 53.85 33.33 25.81 36.36 29.17 29.17 45.16 25.00 42.31 42.86 37.50 47.06 54.55 41.67 37.50 20.41 K intron_retention Aldolase,I_chr3R_22083764_22086684 chr3R - chr3R_22082030_22082195 chr3R_22082029_22082030;chr3R_22082195_22082196 chr3R_22081992_22082029;chr3R_22082196_22082345 88.89 86.67 83.33 94.74 93.33 92.31 88.14 85.71 89.47 89.66 100.00 89.13 92.31 100.00 83.33 93.10 90.91 76.47 74.07 86.21 75.00 96.15 92.86 84.00 90.00 80.00 88.89 98.63 93.65 77.78 76.00 94.12 73.08 88.89 93.75 69.23 69.57 77.78 88.89 97.14 88.89 93.75 92.31 65.79 84.21 75.00 76.92 91.18 83.33 93.10 76.92 84.62 NA 92.86 95.00 73.91 81.82 92.86 K jcn_only_AA foxo,I_chr3R_9907161_9907218 chr3R + chr3R_9906910_9907055 chr3R_9906910_9907028 chr3R_9906726_9906909;chr3R_9907056_9907153 72.26 70.83 NA 70.37 NA NA NA NA 67.65 NA NA 90.00 NA NA NA NA NA NA NA 65.12 NA 92.59 71.15 67.65 64.29 NA 64.71 72.73 75.00 85.19 NA 68.00 80.56 69.57 71.43 92.86 73.47 71.79 58.33 78.79 NA 77.08 NA 86.96 NA NA 80.00 65.38 73.91 77.27 80.00 NA NA NA NA 61.54 75.00 69.44 K jcn_only_AD psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6493640_6498054;chr2R_6449696_6498054;chr2R_6493563_6498054 chr2R_6457648_6498054 chr2R_6498055_6499020 60.55 70.00 64.71 59.42 63.33 63.83 55.56 58.75 63.04 55.17 57.69 61.96 50.98 66.67 68.63 66.67 61.11 64.10 72.73 54.65 63.04 51.11 63.89 50.00 55.17 60.00 53.06 33.33 NA 40.00 64.29 NA 32.35 72.73 68.42 40.00 58.14 44.90 58.93 58.23 NA 67.92 83.33 65.96 NA 52.17 69.57 50.00 59.22 80.56 53.45 67.44 44.83 NA 66.67 60.00 80.00 76.00 K jcn_only_AD hppy,I_chr2R_15066378_15066915,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15066304_15067003;chr2R_15066243_15067003;chr2R_15066358_15067003 chr2R_15066378_15067003 chr2R_15067004_15067015;chr2R_15066237_15066242 93.32 NA NA NA NA NA NA NA 90.62 NA NA 90.91 NA NA NA 100.00 NA NA 90.91 100.00 NA 97.83 96.43 NA NA NA NA 86.96 93.10 NA NA NA NA NA NA NA NA 90.48 NA 95.45 NA NA NA 96.97 NA NA NA 97.14 85.00 NA 93.55 NA NA NA 76.19 NA NA NA K jcn_only_AD Atet,chr2L_4334987_4335394.0,chr2L_4335788_4336447.0 chr2L + chr2L_4334440_4336449;chr2L_4334105_4336449;chr2L_4334111_4336449 chr2L_4334031_4336449 chr2L_4336450_4336957;chr2L_4333936_4334030 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 4.35 NA NA 4.35 0.00 NA 11.86 0.00 NA NA NA NA NA 0.00 6.90 NA NA 7.41 0.00 0.00 0.00 NA NA NA 12.50 0.00 0.00 NA 12.50 NA 0.00 NA 6.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 K alternative_donor CG5694,RI_chr2L_10229956_10231366 chr2L - chr2L_10229956_10231538;chr2L_10229956_10231394 chr2L_10229956_10231282 chr2L_10229856_10229955;chr2L_10231539_10231648 60.00 60.00 64.29 73.08 75.00 46.15 62.96 46.88 55.56 60.00 90.00 57.69 35.00 57.14 70.00 64.10 76.92 64.71 37.04 68.75 83.33 62.50 53.85 47.37 60.00 66.67 90.91 100.00 33.33 75.00 46.67 45.45 28.57 59.38 69.23 57.14 63.64 75.00 58.33 63.64 53.85 57.58 88.89 42.86 50.00 61.54 50.00 50.00 53.66 46.67 77.78 66.67 60.00 42.86 76.92 57.14 77.78 60.00 K intron_retention CG12090,I_chr3L_1525393_1526659,Ir62a chr3L - chr3L_1529229_1531390 chr3L_1529228_1529229;chr3L_1531390_1531391 chr3L_1529106_1529228;chr3L_1531391_1531522 38.71 36.84 45.83 41.67 48.00 44.00 57.89 28.12 53.85 33.33 40.91 30.00 63.64 45.45 38.71 70.97 52.17 56.52 61.11 42.11 47.83 9.52 31.71 32.50 51.72 65.22 40.00 NA 38.10 32.00 43.24 25.00 37.04 46.15 24.00 10.71 25.00 33.33 37.04 50.00 31.25 46.77 57.14 26.09 23.08 23.08 33.33 25.81 50.98 46.67 38.71 40.00 18.52 25.00 48.57 37.50 33.33 20.00 K intron_retention spri,I_chrX_10404621_10469422,I_chrX_10413811_10440661,I_chrX_10417598_10440661,CG15296 chrX - chrX_10417598_10438418 chrX_10417597_10417598;chrX_10438418_10438419 chrX_10417498_10417597;chrX_10438419_10438429 0.00 NA NA NA NA NA 6.25 0.00 0.00 0.00 NA 6.25 NA NA 0.00 0.00 NA NA NA 6.67 NA 7.14 0.00 0.00 0.00 0.00 7.69 4.35 0.00 6.25 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 8.70 NA NA NA 7.14 0.00 NA 0.00 NA NA NA NA NA NA NA K alternative_donor lig,CI_chr2R_3962006_3962916,I_chr2R_3962357_3962977,RI_chr2R_3962875_3962977 chr2R + chr2R_3961910_3962980 chr2R_3962006_3962980 chr2R_3962981_3963016;chr2R_3961906_3961909 100.00 99.13 100.00 100.00 100.00 100.00 100.00 100.00 99.58 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.90 100.00 100.00 100.00 100.00 100.00 95.71 100.00 100.00 100.00 100.00 99.55 100.00 100.00 100.00 100.00 98.72 99.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.08 100.00 100.00 K intron_retention alt chr3R - chr3R_13500734_13500796 chr3R_13500733_13500734;chr3R_13500796_13500797 chr3R_13500611_13500733;chr3R_13500797_13501255 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.36 0.00 0.00 0.00 K intron_retention Mcr chr2L - chr2L_8075360_8075427 chr2L_8075359_8075360;chr2L_8075427_8075428 chr2L_8075254_8075359;chr2L_8075428_8075602 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD exba,RI_chr3R_1425087_1425302,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1425087_1425759;chr3R_1425087_1426125;chr3R_1425087_1426009 chr3R_1425087_1426209 chr3R_1424987_1425086;chr3R_1426210_1426225 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 1.23 0.00 2.33 0.00 1.64 0.00 0.00 0.00 0.00 0.00 2.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 1.96 0.00 0.00 2.70 K intron_retention crol,I_chr2L_11799403_11802904 chr2L - chr2L_11799151_11799234 chr2L_11799150_11799151;chr2L_11799234_11799235 chr2L_11799095_11799150;chr2L_11799235_11799402 84.68 86.09 89.31 92.78 89.89 89.07 81.91 83.29 87.89 75.60 84.74 82.32 82.63 88.73 89.84 91.07 85.47 84.03 87.40 85.62 85.49 92.26 84.22 83.29 83.85 84.98 91.93 84.49 85.56 84.68 84.55 78.42 87.50 84.18 84.17 91.16 87.41 83.91 86.14 81.73 87.63 84.68 83.96 80.86 78.66 81.56 83.42 85.20 84.87 83.03 86.23 81.00 77.78 81.82 85.62 81.50 85.71 83.05 K intron_retention Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654157,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15648833_15649136 chrX_15648832_15648833;chrX_15649136_15649137 chrX_15648519_15648832;chrX_15649137_15649180 0.00 NA NA 0.00 NA NA 8.33 0.00 9.09 NA NA 0.00 9.09 0.00 NA 5.88 NA NA 0.00 15.38 NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 6.25 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 4.76 NA NA NA NA NA NA NA NA 0.00 K intron_retention Mes-4,I_chr3R_23761704_23761783 chr3R - chr3R_23761716_23761783 chr3R_23761715_23761716;chr3R_23761783_23761784 chr3R_23759285_23761715;chr3R_23761784_23761883 0.00 1.64 0.00 0.00 0.00 0.00 0.00 1.87 1.97 0.00 0.00 2.54 0.00 0.00 0.00 0.00 1.92 1.67 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.08 2.44 1.19 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 1.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Bem46,RI_chr2L_2995071_2997790 chr2L + chr2L_2988384_2988436 chr2L_2988383_2988384;chr2L_2988436_2988437 chr2L_2988129_2988383;chr2L_2988437_2988678 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.87 0.00 1.52 0.00 3.03 0.00 0.00 1.23 2.63 13.79 0.00 0.00 0.00 0.96 4.55 0.00 0.00 0.00 1.45 0.00 1.13 2.67 5.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG8043,CG11755 chr3R + chr3R_4502770_4502817;chr3R_4502770_4502834;chr3R_4502770_4502843 chr3R_4502770_4502810 chr3R_4502645_4502769;chr3R_4502844_4503955 0.00 NA 0.00 7.69 NA 0.00 7.14 0.00 8.33 NA NA 6.25 NA 11.11 0.00 0.00 NA 0.00 0.00 0.00 14.29 0.00 0.00 0.00 11.11 11.11 10.00 28.57 NA NA 7.14 0.00 NA 0.00 NA 10.00 0.00 0.00 0.00 0.00 NA 0.00 NA 11.11 NA 0.00 0.00 NA 5.88 NA 9.09 NA NA 11.11 0.00 0.00 0.00 0.00 K intron_retention CG7852,Cct1,Cct2 chr3L + chr3L_1540958_1541435 chr3L_1540957_1540958;chr3L_1541435_1541436 chr3L_1540752_1540957;chr3L_1541436_1541650 66.67 80.95 100.00 63.64 73.33 75.00 92.86 66.67 53.12 46.67 90.00 66.67 92.86 81.82 78.57 77.78 66.67 75.00 58.82 77.78 81.82 43.18 57.78 64.52 75.00 71.43 76.19 73.91 61.29 50.00 87.50 68.18 51.85 68.75 65.00 35.48 47.37 53.85 61.36 58.62 68.18 70.59 88.89 50.00 54.84 61.76 65.22 34.62 59.09 69.23 63.33 68.42 63.16 80.95 57.89 69.57 74.07 46.67 K cassette Zyx102EF,I_chr4_1078380_1078835,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1078380_1078835 chr4_1078380_1078432;chr4_1078666_1078835 chr4_1078433_1078665 chr4_1078280_1078379;chr4_1078836_1078848 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 100.00 92.31 97.67 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 92.31 95.00 94.44 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 K multi_cassette CG40263,F_chr2RHet_1265687_1293040,F_chr2RHet_1298459_1298703,F_chr2RHet_1298459_1311408,F_chr2RHet_1298885_1299622,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1286572_1324445 chr2RHet_1286572_1292103;chr2RHet_1292187_1293055;chr2RHet_1293175_1293235;chr2RHet_1293394_1324445 chr2RHet_1292104_1292186;chr2RHet_1293056_1293174;chr2RHet_1293236_1293393 chr2RHet_1286565_1286571;chr2RHet_1324446_1324530 70.59 72.73 78.57 83.33 54.55 71.43 66.67 85.37 84.62 66.67 NA 90.48 71.43 70.59 76.47 77.27 70.59 87.50 81.82 66.67 100.00 33.33 60.00 70.00 60.00 62.50 50.00 NA 66.67 80.00 70.83 66.67 75.00 80.00 66.67 66.67 42.86 83.33 63.64 66.67 42.86 95.45 69.23 75.00 37.50 69.23 70.00 80.00 75.00 50.00 76.47 57.14 80.00 80.00 85.00 54.55 57.14 75.00 K jcn_only_AA RhoGAP92B chr3R + chr3R_15731083_15734155 chr3R_15731083_15731352 chr3R_15730878_15731082 99.19 98.60 100.00 98.65 97.94 100.00 98.01 98.58 98.94 100.00 95.60 99.11 99.31 100.00 100.00 100.00 97.87 100.00 100.00 98.73 98.25 91.55 99.20 99.42 99.29 97.50 97.52 100.00 98.58 99.27 98.10 100.00 96.84 100.00 98.00 98.40 98.94 97.30 98.38 99.48 97.96 98.63 100.00 97.86 99.22 97.69 100.00 100.00 99.67 99.39 100.00 97.25 100.00 99.19 99.32 99.15 99.44 100.00 K intron_retention gish,I_chr3R_12125412_12126290 chr3R + chr3R_12123068_12124191 chr3R_12123067_12123068;chr3R_12124191_12124192 chr3R_12122897_12123067;chr3R_12124192_12124272 0.00 0.00 0.00 2.08 0.00 1.94 2.59 0.51 1.02 0.00 0.00 0.00 0.00 1.77 0.78 1.26 0.00 0.93 0.00 0.00 0.88 1.06 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.95 1.57 1.28 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 1.22 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 K intron_retention Khc-73 chr2R - chr2R_11412407_11412519 chr2R_11412406_11412407;chr2R_11412519_11412520 chr2R_11412365_11412406;chr2R_11412520_11412834 13.33 NA NA 13.33 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA K cassette DNApol-iota chr3R + chr3R_4059369_4059972 chr3R_4059369_4059860;chr3R_4059865_4059972 chr3R_4059861_4059864 chr3R_4059361_4059368;chr3R_4059973_4060944 0.00 NA NA 0.00 NA NA 6.67 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor Arf51F chr2R + chr2R_11210218_11210628 chr2R_11210247_11210628 chr2R_11210629_11210646;chr2R_11209979_11210217 85.11 84.38 97.30 84.78 85.19 83.78 81.63 83.93 83.82 83.87 79.31 80.00 76.67 90.62 91.49 92.11 87.88 95.35 88.24 86.08 90.48 92.86 87.27 88.89 81.58 85.11 85.71 95.83 85.29 82.22 91.43 81.08 81.63 82.69 91.89 81.25 91.30 86.67 84.44 76.92 80.65 88.57 91.30 79.41 77.19 83.72 76.92 84.09 95.08 87.88 83.33 86.67 80.00 87.10 93.33 82.93 83.33 87.72 K alternative_donor CG7222 chr2R + chr2R_6701240_6701535;chr2R_6700970_6701535 chr2R_6701242_6701535 chr2R_6701536_6701719;chr2R_6700958_6700969 92.86 84.62 90.00 92.50 83.33 92.86 90.62 92.86 91.30 100.00 100.00 94.29 94.74 89.47 88.24 92.31 100.00 88.89 92.86 92.50 83.33 100.00 91.30 92.86 100.00 90.48 95.24 100.00 100.00 100.00 90.91 100.00 91.67 92.68 90.00 100.00 100.00 83.33 100.00 90.91 100.00 86.11 100.00 100.00 100.00 100.00 92.31 100.00 95.00 82.35 94.74 100.00 77.78 87.50 91.30 92.31 100.00 88.89 K intron_retention CG7920,I_chr3R_25837330_25837394 chr3R - chr3R_25837330_25837390 chr3R_25837329_25837330;chr3R_25837390_25837391 chr3R_25837261_25837329;chr3R_25837391_25837459 0.00 0.00 0.00 0.34 0.00 0.00 0.80 0.00 0.38 2.10 0.00 0.25 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.20 0.47 0.00 0.90 0.29 0.00 0.00 1.51 3.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.44 0.00 0.00 0.00 0.43 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.49 0.00 K intron_retention spi,I_chr2L_19569183_19577185,I_chr2L_19569227_19572142,I_chr2L_19569227_19577173 chr2L - chr2L_19571768_19572499 chr2L_19571767_19571768;chr2L_19572499_19572500 chr2L_19571572_19571767;chr2L_19572500_19572711 6.09 3.28 7.41 22.73 NA 12.50 7.41 23.81 15.15 NA NA 12.24 NA 18.75 10.00 12.50 NA 0.00 23.33 9.68 7.69 0.00 0.00 3.37 6.06 26.32 8.33 NA 11.76 4.17 13.16 0.00 0.00 3.12 4.29 9.30 4.35 3.33 5.66 4.23 5.71 6.67 10.53 7.32 6.06 2.35 0.95 7.55 12.96 6.12 5.45 0.00 NA 4.00 6.90 0.00 0.00 3.03 K jcn_only_AA I_chrX_3345099_3416710,CG10803,I_chrX_3380218_3380345 chrX + chrX_3380055_3380115;chrX_3380055_3380351 chrX_3380055_3380345 chrX_3379703_3380054 90.69 NA 88.46 86.36 NA NA 92.31 90.24 87.88 NA 95.24 90.48 NA NA NA 83.87 NA NA NA 95.83 NA NA 93.10 NA NA NA 95.65 NA NA NA NA NA 87.80 96.55 87.50 NA NA 90.00 NA 79.41 NA 93.75 NA 90.91 NA NA NA 91.43 96.00 NA NA NA NA NA NA NA NA NA K intron_retention Pcmt,I_chr3R_1379398_1379947 chr3R - chr3R_1379790_1379850 chr3R_1379789_1379790;chr3R_1379850_1379851 chr3R_1379653_1379789;chr3R_1379851_1380033 5.88 2.72 2.50 20.00 2.70 7.95 4.40 5.93 5.14 6.60 5.88 5.66 0.00 8.06 7.53 1.57 6.94 2.50 6.10 6.63 4.35 7.63 7.10 5.78 13.75 17.57 9.17 9.01 26.39 8.15 18.82 6.21 6.05 6.06 2.24 9.77 2.92 4.94 4.76 5.26 17.62 6.71 4.48 3.80 3.97 7.31 4.44 8.33 7.14 4.62 7.87 5.00 4.46 5.70 4.00 4.22 4.35 5.08 N alternative_donor CG16971,CG33229,I_chr3L_225856_225909,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_224779_224972;chr3L_224886_224972 chr3L_224184_224972 chr3L_224973_225140;chr3L_224174_224183 74.50 74.50 74.02 27.83 82.23 77.68 86.71 87.30 87.65 74.11 88.46 86.57 88.74 87.22 82.06 73.33 87.54 87.15 86.29 90.35 87.28 80.66 44.68 50.65 62.28 65.38 29.20 36.76 54.31 73.55 85.31 76.82 74.62 85.05 64.08 21.30 68.77 47.24 62.16 77.50 66.18 84.50 84.80 75.00 70.27 72.34 60.87 82.58 82.38 49.54 42.55 70.78 67.46 32.43 88.03 57.95 51.19 79.93 K alternative_acceptor Lasp,I_chr3L_16671761_16673911,I_chr3L_16671780_16671907,RI_chr3L_16674471_16704042 chr3L - chr3L_16671761_16671907 chr3L_16671780_16671907 chr3L_16671908_16672007;chr3L_16671680_16671760 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.78 0.40 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 K jcn_only_AA I_chr3R_27554202_27554334,CG11563 chr3R + chr3R_27563323_27563390 chr3R_27563323_27563380 chr3R_27563254_27563322;chr3R_27563391_27563456 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 98.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.81 98.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.02 100.00 K jcn_only_AD CG9932,I_chr2L_13025498_13027193,I_chr2L_13031395_13035824 chr2L - chr2L_13025498_13027065;chr2L_13025498_13027344 chr2L_13025498_13026528 chr2L_13025398_13025497;chr2L_13027345_13027744 74.19 81.67 63.16 68.18 82.61 58.18 69.35 53.66 76.19 84.38 53.66 62.38 40.48 73.68 72.88 69.70 60.00 72.09 55.32 67.05 65.71 81.82 78.30 79.41 82.54 76.74 75.00 77.03 69.70 70.18 68.42 70.83 76.92 71.43 74.19 80.36 79.82 90.48 81.19 96.20 76.74 67.77 85.71 74.68 68.00 72.92 77.27 72.22 69.85 77.03 79.71 83.33 80.43 76.19 64.52 77.97 83.33 61.29 K intron_retention CG42518,F_chr2R_14055227_14055470 chr2R + chr2R_14055227_14055277 chr2R_14055226_14055227;chr2R_14055277_14055278 chr2R_14055163_14055226;chr2R_14055278_14055643 3.17 1.85 5.63 6.38 6.82 0.00 2.25 3.67 1.56 9.26 6.12 3.81 0.00 4.44 2.60 2.27 0.00 3.03 3.28 2.68 0.00 6.67 4.49 3.09 2.94 0.00 2.63 4.62 26.92 6.67 0.86 3.17 2.06 3.41 3.92 7.69 3.23 0.00 4.44 6.14 4.88 5.32 7.69 1.19 0.00 3.75 3.12 6.56 4.44 3.33 3.70 3.12 0.00 0.00 3.03 1.39 0.00 0.94 K intron_retention TER94 chr2R + chr2R_5878079_5878164 chr2R_5878078_5878079;chr2R_5878164_5878165 chr2R_5877976_5878078;chr2R_5878165_5880201 0.00 0.00 0.00 0.49 0.49 0.00 0.31 0.00 0.00 0.00 0.00 0.20 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.48 1.63 0.00 0.00 0.00 0.00 0.19 0.14 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.47 0.00 0.00 0.00 0.22 0.00 0.00 0.00 K jcn_only_AA RanBPM chr2R + chr2R_6322096_6322156;chr2R_6322096_6322150 chr2R_6322096_6322141 chr2R_6321932_6322095;chr2R_6322157_6322290 0.00 0.86 0.00 0.00 0.00 0.00 1.95 0.69 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 1.12 1.12 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.70 0.00 0.00 0.81 0.00 0.70 0.00 0.00 1.54 2.74 0.00 0.00 0.00 0.00 3.85 0.00 0.74 0.74 0.00 0.00 0.00 0.00 0.00 0.00 1.23 K intron_retention Hsf,I_chr2R_14018415_14018474 chr2R - chr2R_14018893_14018964 chr2R_14018892_14018893;chr2R_14018964_14018965 chr2R_14018787_14018892;chr2R_14018965_14019033 19.44 13.56 12.86 29.79 16.33 20.34 40.30 9.64 18.90 25.00 40.91 22.00 27.08 21.57 17.33 13.98 21.15 16.67 14.93 15.50 26.67 21.05 17.05 21.54 39.47 60.71 25.00 18.06 50.94 17.86 16.90 25.00 23.53 11.96 19.51 31.71 18.18 17.74 16.47 15.83 33.33 17.36 17.78 13.41 16.05 22.06 21.54 23.91 19.78 11.69 22.67 23.68 16.07 19.44 19.12 11.86 21.69 18.68 K jcn_only_AD CG6695 chr3R + chr3R_20483336_20484042;chr3R_20483332_20484042 chr3R_20483291_20484042 chr3R_20484043_20484133;chr3R_20483238_20483290 4.88 3.51 3.70 4.88 8.33 0.00 4.35 0.00 5.97 0.00 NA 2.56 NA 0.00 NA NA 4.35 8.00 NA 3.28 NA 4.65 4.94 8.33 11.54 NA 0.00 9.68 0.00 5.13 25.00 12.82 9.52 8.82 2.70 5.26 5.75 6.38 8.00 2.74 1.75 6.90 NA 9.86 3.03 6.35 7.14 0.00 0.00 4.35 3.45 4.76 6.15 8.96 6.67 9.38 3.45 3.39 K intron_retention CG33228,F_chr2R_20556700_20557023,I_chr2R_20569965_20572193 chr2R - chr2R_20556620_20556674 chr2R_20556619_20556620;chr2R_20556674_20556675 chr2R_20556600_20556619;chr2R_20556675_20556699 2.78 NA NA NA NA NA NA NA NA NA NA 5.56 NA NA NA 7.14 NA NA NA 6.67 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 6.67 NA NA NA 0.00 0.00 NA NA NA NA K jcn_only_AA Sbp2,RI_chr3L_8297501_8297847 chr3L + chr3L_8298069_8298130 chr3L_8298069_8298121 chr3L_8297848_8298068;chr3L_8298131_8298433 100.00 100.00 95.24 98.33 100.00 100.00 98.04 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 98.25 100.00 100.00 97.44 100.00 100.00 100.00 100.00 98.77 96.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 97.78 100.00 98.08 100.00 100.00 K jcn_only_AD CG9821,I_chr3R_4644986_4645248,I_chr3R_4644986_4645577,I_chr3R_4644986_4645648,I_chr3R_4644986_4646263,RI_chr3R_4644986_4646264,RI_chr3R_4645903_4646033 chr3R - chr3R_4644986_4645248;chr3R_4644986_4645577;chr3R_4644986_4645649 chr3R_4644986_4646033 chr3R_4644886_4644985;chr3R_4646034_4646133 22.67 19.57 24.68 23.06 24.42 24.52 22.17 27.06 22.93 25.66 24.64 20.71 28.24 25.07 21.18 24.95 27.31 18.75 24.32 19.75 18.54 24.37 14.50 11.79 15.60 22.89 19.91 26.78 47.83 31.17 24.64 25.33 33.08 27.90 18.57 20.79 12.42 19.17 14.46 23.66 41.10 22.24 19.60 13.47 39.02 22.76 15.91 37.28 22.67 19.20 21.18 21.85 12.70 14.00 19.11 17.17 18.67 26.47 K alternative_donor RpL30,I_chr2L_19008540_19008948,REI_chr2L_19008544_19008723,I_chr2L_19008544_19008918,snoRNA:Me28S-A2113 chr2L - chr2L_19008544_19008948;chr2L_19008544_19008918 chr2L_19008544_19008723 chr2L_19008444_19008543;chr2L_19008949_19009018 1.34 0.88 1.20 1.15 1.27 1.13 1.16 1.17 1.20 1.42 1.23 1.35 1.19 1.28 1.03 1.72 0.92 1.19 1.45 1.44 1.30 7.19 1.50 1.38 1.74 1.13 1.27 1.74 1.53 1.35 6.97 1.64 1.88 1.34 1.52 1.28 1.15 1.30 1.28 1.68 1.53 1.19 1.35 1.26 1.30 1.33 1.36 1.93 2.52 1.82 2.09 1.39 1.06 1.23 1.43 1.42 1.09 1.58 K intron_retention capu,I_chr2L_3884519_3902594,I_chr2L_3887800_3888648,I_chr2L_3887896_3888648 chr2L - chr2L_3887557_3893261 chr2L_3887556_3887557;chr2L_3893261_3893262 chr2L_3886984_3887556;chr2L_3893262_3893604 2.47 2.13 0.00 0.00 2.38 3.12 0.00 3.90 3.23 0.00 1.96 2.47 0.00 4.08 3.28 1.92 0.00 0.00 2.08 3.23 0.00 6.19 5.80 1.67 0.00 8.33 3.57 6.25 2.33 1.19 3.85 0.00 4.00 5.19 9.52 14.29 4.60 7.69 2.78 2.70 0.00 3.45 0.00 2.90 3.64 2.63 2.08 3.60 1.92 0.00 0.00 3.03 0.00 4.00 1.45 4.44 0.00 0.97 K alternative_acceptor CG7028,I_chr3L_207277_208117 chr3L - chr3L_209711_209783 chr3L_209714_209783 chr3L_209784_210399;chr3L_209450_209710 92.86 90.91 88.89 89.19 100.00 92.31 94.74 88.89 93.10 NA 90.91 93.75 100.00 76.92 80.95 93.33 90.91 92.31 92.86 96.67 100.00 100.00 92.86 93.75 90.00 100.00 90.00 88.24 94.74 82.35 96.30 85.00 96.97 85.71 92.86 76.92 94.44 91.67 92.86 89.47 93.75 96.67 92.31 100.00 94.12 96.15 92.31 91.89 91.67 91.67 94.12 100.00 92.86 100.00 94.12 90.91 NA 97.06 K alternative_acceptor Rpn1 chr3L + chr3L_19910214_19910288 chr3L_19910214_19910282 chr3L_19908156_19910213;chr3L_19910289_19911265 100.00 100.00 100.00 100.00 97.50 97.50 98.11 100.00 98.97 100.00 100.00 98.51 100.00 100.00 98.08 100.00 100.00 100.00 98.08 98.82 100.00 100.00 94.74 97.62 100.00 100.00 100.00 100.00 100.00 100.00 98.04 100.00 100.00 98.41 100.00 100.00 97.78 100.00 100.00 100.00 100.00 98.80 97.56 97.50 98.18 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 97.44 98.28 K mutually_exclusive CG9795,I_chr3R_149612_149686,RI_chr3R_149612_150058,I_chr3R_150391_150451 chr3R + chr3R_149612_150058,chr3R_150233_150309 chr3R_149612_149674,chr3R_149887_150309 chr3R_150059_150232 chr3R_149675_149886 chr3R_149512_149611;chr3R_150310_150390 41.66 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 22.22 NA 50.00 NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA 50.00 28.57 NA NA NA 50.00 20.00 NA NA NA NA NA NA 50.00 NA NA NA 66.67 14.29 K jcn_only_AD Rcp chrX + chrX_16778756_16778896 chrX_16778834_16778896 chrX_16778897_16778939;chrX_16778719_16778755 100.00 100.00 100.00 100.00 NA 100.00 95.83 100.00 100.00 NA NA 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 96.00 100.00 97.30 100.00 97.92 100.00 100.00 96.67 100.00 100.00 100.00 100.00 NA 100.00 NA 96.77 100.00 100.00 100.00 100.00 98.75 K alternative_acceptor Ac78C,F_chr3L_21141024_21153737 chr3L - chr3L_21140529_21140594 chr3L_21140532_21140594 chr3L_21140595_21141033;chr3L_21140234_21140528 70.97 88.89 65.38 70.97 56.25 72.73 65.38 68.57 81.82 76.92 66.67 61.76 66.67 75.00 82.35 71.43 72.73 60.00 70.00 65.12 66.67 72.55 70.00 80.77 77.78 NA 73.68 64.71 66.67 66.67 69.23 76.19 76.79 70.97 68.97 80.95 73.91 66.67 69.23 68.42 89.29 73.33 60.00 67.44 75.00 74.07 71.43 72.90 74.29 61.54 73.33 69.23 76.92 NA 83.33 61.11 61.54 67.44 K jcn_only_AA CG42542,I_chr3R_11024452_11024586 chr3R + chr3R_11025433_11027745 chr3R_11025433_11026407 chr3R_11025292_11025432 5.77 3.77 3.70 5.75 4.65 4.00 13.10 1.41 3.33 14.81 3.77 7.92 0.00 3.70 9.46 10.00 7.14 5.19 1.72 5.65 6.12 7.61 11.11 10.34 8.97 5.56 9.68 5.77 14.29 11.32 10.91 5.26 1.72 8.33 1.92 28.77 12.79 10.14 7.00 7.29 12.24 6.38 5.41 4.11 5.75 1.16 10.00 4.76 9.09 3.77 3.33 2.13 5.13 13.04 3.39 5.88 17.50 4.84 K jcn_only_AD Mpcp chr3L + chr3L_14530803_14531103;chr3L_14530935_14531103 chr3L_14530949_14531103 chr3L_14531104_14531521;chr3L_14530797_14530802 0.11 0.42 0.00 0.35 0.00 0.00 0.54 0.25 0.22 0.00 0.16 0.18 0.00 0.00 0.11 0.16 0.00 0.15 0.47 0.31 0.00 0.00 0.16 0.11 0.22 0.31 0.00 0.24 0.70 0.44 0.00 0.00 0.00 0.11 0.00 1.07 0.06 0.00 0.39 0.11 0.00 0.00 0.18 0.28 0.00 0.00 0.19 0.00 0.07 0.00 0.75 0.20 0.00 0.00 0.13 0.24 0.17 0.90 N intron_retention sta,E_chrX_1376435_1376729,snoRNA:M,snoRNA:Me28S-G980 chrX - chrX_1376514_1377290 chrX_1376513_1376514;chrX_1377290_1377291 chrX_1375828_1376513;chrX_1377291_1377379 100.00 NA NA NA NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA 100.00 NA 9.76 NA NA NA NA 100.00 100.00 100.00 NA 100.00 48.00 37.50 NA NA 100.00 100.00 NA NA 40.35 100.00 100.00 NA 41.67 45.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA 100.00 100.00 K alternative_donor Eph,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_640676_640879;chr4_640734_640879 chr4_640804_640879 chr4_640880_640963;chr4_640576_640675 94.44 95.65 95.24 97.22 92.86 95.00 97.37 97.78 98.08 90.00 93.75 97.50 96.30 96.43 90.48 98.00 95.00 92.31 93.10 95.74 94.12 85.71 96.67 95.83 94.12 95.00 95.65 75.00 88.89 88.24 92.86 84.62 83.33 97.67 88.89 94.12 94.12 85.71 95.00 96.00 100.00 95.45 95.65 95.45 94.12 96.30 88.24 92.86 94.74 93.75 92.59 86.67 81.82 87.50 96.55 95.83 94.44 92.31 K intron_retention cnn,I_chr2R_9330634_9331165,I_chr2R_9331192_9331257,I_chr2R_9333096_9336812,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9330634_9331932 chr2R_9330633_9330634;chr2R_9331932_9331933 chr2R_9330534_9330633;chr2R_9331933_9332199 0.00 0.00 0.00 0.00 0.00 0.00 2.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention woc,I_chr3R_23083923_23083994,I_chr3R_23089174_23089695,I_chr3R_23096096_23096561 chr3R - chr3R_23083931_23083994 chr3R_23083930_23083931;chr3R_23083994_23083995 chr3R_23083805_23083930;chr3R_23083995_23084094 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 1.12 0.00 0.00 0.75 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.95 0.99 1.35 0.56 0.00 0.00 0.00 0.00 1.53 0.00 0.00 K intron_retention Arp14D,RE_chrX_16445264_16446372,E_chrX_16447426_16447500 chrX - chrX_16446484_16447376 chrX_16446483_16446484;chrX_16447376_16447377 chrX_16446373_16446483;chrX_16447377_16447425 0.00 2.11 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 2.22 0.93 1.63 0.00 0.00 0.00 0.00 0.87 0.00 2.17 0.51 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.56 1.71 0.00 1.41 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.68 0.84 0.00 0.00 0.91 0.00 0.00 0.00 1.82 0.00 0.00 K jcn_only_AA CG14881 chr3R + chr3R_12260796_12260857 chr3R_12260796_12260855 chr3R_12260742_12260795;chr3R_12260858_12260924 96.88 97.73 95.12 98.31 95.65 97.06 95.24 100.00 98.61 100.00 100.00 97.26 97.22 100.00 100.00 97.92 94.29 94.44 96.88 92.78 95.24 100.00 93.18 100.00 97.87 97.44 100.00 88.89 96.08 97.37 94.74 100.00 98.81 90.20 97.67 93.75 93.18 100.00 93.75 93.86 97.87 95.95 100.00 95.74 97.78 100.00 93.10 93.22 94.74 96.97 92.31 96.30 95.24 96.00 93.02 95.24 93.22 97.78 N alternative_donor mfrn,I_chr3R_23770737_23770817,I_chr3R_23771063_23771153,I_chr3R_23771063_23772599 chr3R - chr3R_23771063_23771137;chr3R_23771063_23772915 chr3R_23771063_23771153 chr3R_23770974_23771062;chr3R_23772916_23773724 6.98 6.35 8.06 11.54 6.67 7.69 9.52 13.04 7.69 7.69 4.62 10.78 8.70 8.51 5.88 7.84 6.12 6.25 9.84 11.51 5.45 11.54 8.47 7.48 12.00 6.52 14.58 8.42 6.77 6.74 8.47 6.15 3.82 12.36 8.77 7.50 4.88 4.94 3.15 6.74 3.00 8.47 6.98 5.00 1.87 5.00 5.33 7.41 10.00 6.98 9.62 6.06 3.17 2.94 5.56 4.29 2.22 2.52 K intron_retention Lag1,I_chrX_6152540_6152929,RI_chrX_6153758_6161036,I_chrX_6160907_6161036 chrX - chrX_6152828_6152929 chrX_6152827_6152828;chrX_6152929_6152930 chrX_6152683_6152827;chrX_6152930_6153029 2.16 2.11 2.70 2.62 2.58 2.16 2.24 1.17 2.35 1.89 2.60 2.85 1.72 2.13 2.55 1.68 2.52 2.36 1.68 1.70 2.73 14.71 2.37 2.21 3.59 2.60 2.33 5.28 17.86 1.10 1.55 1.58 1.48 1.21 2.38 2.24 1.73 1.39 2.40 1.72 2.53 2.52 2.01 1.61 1.30 2.10 1.81 1.32 1.67 3.68 2.44 3.09 1.36 3.00 2.06 1.96 1.89 0.00 K jcn_only_AA CG5060,RI_chr3R_16115918_16116080 chr3R + chr3R_16115918_16116092 chr3R_16115918_16116080 chr3R_16115818_16115917;chr3R_16116093_16116180 22.69 22.22 25.00 25.82 20.24 15.15 17.20 17.89 21.88 21.65 19.05 22.55 33.80 36.25 13.82 26.00 20.00 23.96 23.17 22.00 17.91 25.79 22.44 16.99 23.08 31.43 22.69 41.18 20.42 29.73 21.37 26.09 23.73 23.03 37.66 31.33 24.47 25.81 16.58 14.38 26.19 20.37 18.48 26.39 24.59 29.11 25.76 18.81 24.18 18.75 20.15 26.32 26.74 18.42 18.33 22.73 8.82 22.12 K jcn_only_AD ctp,I_chrX_4582382_4585669,I_chrX_4582627_4585669,RI_chrX_4582706_4585629,RI_chrX_4582706_4592329 chrX + chrX_4582325_4585669;chrX_4582351_4585669 chrX_4582706_4585669 chrX_4585670_4585729;chrX_4582282_4582324 0.98 0.85 1.49 0.81 1.57 1.99 1.94 1.48 1.05 1.61 1.54 0.63 2.79 1.15 0.45 0.74 0.46 1.29 1.15 0.44 0.81 0.55 0.97 0.41 1.41 0.28 0.92 4.37 0.31 1.50 0.61 1.02 1.06 1.02 1.42 0.33 0.78 0.94 0.66 1.05 0.85 1.05 1.82 0.65 2.05 0.56 1.27 0.81 1.77 0.71 0.69 0.77 1.03 0.69 0.98 1.60 0.70 1.75 K cassette R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8088454_8105691 chr2L_8088454_8089393;chr2L_8089737_8105691 chr2L_8089394_8089736 chr2L_8088448_8088453;chr2L_8105692_8105782 100.00 100.00 100.00 99.50 100.00 100.00 100.00 100.00 99.63 100.00 100.00 99.48 99.18 100.00 99.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.04 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 98.31 98.68 99.54 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 N alternative_donor RpL31,CG1827 chr2R + chr2R_5475162_5475281 chr2R_5475212_5475281 chr2R_5475282_5475378;chr2R_5475113_5475161 100.00 99.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.93 100.00 100.00 100.00 100.00 99.84 100.00 100.00 100.00 100.00 100.00 99.89 100.00 100.00 100.00 100.00 100.00 K cassette Pax,RI_chr2L_19401373_19409403,I_chr2L_19404678_19404749,RI_chr2L_19404683_19426205,RI_chr2L_19404823_19409403 chr2L - chr2L_19401373_19409403 chr2L_19401373_19403998;chr2L_19404683_19409403 chr2L_19403999_19404682 chr2L_19401273_19401372;chr2L_19409404_19409503 100.00 100.00 100.00 99.84 100.00 100.00 100.00 100.00 100.00 99.62 99.39 99.83 99.45 100.00 100.00 99.68 100.00 99.62 100.00 99.86 99.01 99.54 100.00 100.00 99.74 99.63 99.77 99.68 100.00 99.75 100.00 100.00 99.78 100.00 100.00 100.00 99.86 99.80 99.85 100.00 99.62 100.00 99.56 100.00 100.00 100.00 100.00 99.69 100.00 99.72 99.83 99.64 99.78 99.50 100.00 100.00 100.00 100.00 K alternative_acceptor stv chr3L + chr3L_13471583_13474135 chr3L_13471583_13474132 chr3L_13470717_13471582;chr3L_13474136_13474235 21.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 21.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N intron_retention CG31431 chr3R + chr3R_17697863_17697938 chr3R_17697862_17697863;chr3R_17697938_17697939 chr3R_17697704_17697862;chr3R_17697939_17700603 100.00 NA NA NA NA NA 48.48 100.00 100.00 NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 100.00 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention CG31689,I_chr2L_2730373_2736310,I_chr2L_2736431_2737036 chr2L + chr2L_2738616_2738682 chr2L_2738615_2738616;chr2L_2738682_2738683 chr2L_2738447_2738615;chr2L_2738683_2738783 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 1.92 3.12 3.17 0.00 0.00 0.00 0.00 0.00 0.00 13.11 0.00 0.00 0.00 1.75 4.08 0.00 0.00 0.00 0.00 2.78 1.72 1.69 1.37 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17737,I_chr3L_3223527_3224313,I_chr3L_3223943_3224313 chr3L + chr3L_3223422_3223474 chr3L_3223421_3223422;chr3L_3223474_3223475 chr3L_3223400_3223421;chr3L_3223475_3223526 100.00 100.00 100.00 100.00 98.84 100.00 100.00 99.74 99.73 100.00 100.00 99.58 100.00 99.43 100.00 100.00 99.28 99.01 99.48 100.00 98.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.41 100.00 100.00 97.67 100.00 100.00 98.31 100.00 100.00 99.37 100.00 98.00 98.53 100.00 100.00 99.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.33 98.75 K intron_retention CG8839,I_chr2R_8229288_8229488,I_chr2R_8229288_8231538 chr2R - chr2R_8229288_8232025 chr2R_8229287_8229288;chr2R_8232025_8232026 chr2R_8229188_8229287;chr2R_8232026_8232112 1.15 0.00 0.00 1.95 1.54 1.30 1.26 1.20 0.00 5.41 1.02 2.38 1.16 2.17 1.48 2.16 2.06 0.93 2.07 1.90 0.00 0.00 0.00 0.00 0.00 2.27 2.50 0.00 3.28 4.88 1.92 1.67 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 2.17 2.48 2.11 0.00 0.00 0.00 0.00 2.27 0.89 0.00 0.00 1.92 0.00 NA 1.31 0.00 1.59 3.33 K intron_retention CG32767,RI_chrX_4978019_4978605 chrX - chrX_4976273_4978605 chrX_4976272_4976273;chrX_4978605_4978606 chrX_4975519_4976272;chrX_4978606_4978705 30.00 NA NA NA NA NA NA 21.43 26.67 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N intron_retention Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629579_2629913 chr3L_2629578_2629579;chr3L_2629913_2629914 chr3L_2629141_2629578;chr3L_2629914_2629921 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 88.46 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K intron_retention CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25318474_25319093 chr3R_25318473_25318474;chr3R_25319093_25319094 chr3R_25318374_25318473;chr3R_25319094_25319100 32.00 46.15 25.00 38.89 32.00 30.00 47.62 86.21 38.60 43.75 34.88 32.65 30.00 23.81 37.78 40.00 47.22 30.56 44.74 35.44 25.81 26.42 34.78 32.50 30.56 30.77 48.39 28.57 28.57 37.93 37.50 25.00 32.50 33.96 24.32 33.33 40.00 32.00 28.07 20.00 23.40 31.33 29.27 25.00 19.10 26.03 33.33 24.29 43.75 29.03 41.03 35.48 19.35 26.09 35.42 32.35 30.23 25.00 K intron_retention CG1970,I_chr4_590803_590943,I_chr4_590970_591026,I_chr4_590970_591030 chr4 - chr4_590970_591034 chr4_590969_590970;chr4_591034_591035 chr4_590944_590969;chr4_591035_591043 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.55 0.61 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 K alternative_donor CG9485,I_chr2R_17217595_17218598,I_chr2R_17228865_17228924 chr2R + chr2R_17200086_17201928;chr2R_17200246_17201928 chr2R_17200289_17201928 chr2R_17201929_17202269;chr2R_17200084_17200085 60.00 NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette Eb1,RI_chr2R_2640290_2642206,I_chr2R_2640494_2642206,I_chr2R_2642491_2642549 chr2R + chr2R_2640494_2642206 chr2R_2640494_2640731;chr2R_2641009_2642206 chr2R_2640732_2641008 chr2R_2640394_2640493;chr2R_2642207_2642306 85.71 92.31 63.64 62.07 63.64 63.64 80.95 69.23 91.30 87.50 100.00 88.24 66.67 85.71 88.89 81.82 60.00 87.50 88.89 73.68 83.33 47.73 85.71 89.47 93.75 87.50 85.00 66.67 93.75 87.50 76.47 90.91 67.86 69.23 85.71 82.14 86.96 85.71 90.91 77.42 91.67 81.48 85.71 66.67 90.48 100.00 100.00 77.78 83.33 86.67 85.00 81.82 100.00 88.89 81.82 90.91 90.91 90.00 K intron_retention trbd,hyd chr3R - chr3R_5541177_5541242 chr3R_5541176_5541177;chr3R_5541242_5541243 chr3R_5540946_5541176;chr3R_5541243_5541390 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6500881_6501272 chr2R_6500880_6500881;chr2R_6501272_6501273 chr2R_6500491_6500880;chr2R_6501273_6501375 0.00 1.39 3.28 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 2.43 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG5741,I_chr3L_8928033_8928095 chr3L - chr3L_8927241_8927504 chr3L_8927241_8927330;chr3L_8927409_8927504 chr3L_8927331_8927408 chr3L_8926666_8927240;chr3L_8927505_8927696 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention step chr2L - chr2L_21742009_21742074 chr2L_21742008_21742009;chr2L_21742074_21742075 chr2L_21741795_21742008;chr2L_21742075_21742280 3.28 0.00 2.00 5.56 4.44 4.08 3.03 5.00 5.49 0.00 0.00 3.28 0.00 5.13 6.35 0.00 6.67 2.33 3.70 2.11 0.00 0.00 0.00 1.92 6.25 3.45 5.71 10.26 5.41 9.30 6.90 2.50 5.26 4.88 8.89 0.00 0.00 0.00 2.00 4.76 7.69 3.74 5.71 1.82 2.50 2.22 0.00 8.33 5.88 4.17 1.82 1.92 0.00 3.45 8.00 0.00 0.00 2.78 K alternative_last_exon fru chr3R - chr3R_14256687_14258285 chr3R_14257757_14258285 chr3R_14256430_14256686 chr3R_14256949_14257756 chr3R_14258286_14258540 18.18 18.46 17.14 20.00 15.25 15.94 22.08 17.89 17.56 19.35 19.05 14.29 15.71 16.98 15.00 18.57 15.52 14.61 16.42 17.49 18.18 16.00 19.81 22.62 23.88 16.67 27.06 32.26 18.39 16.18 14.55 25.58 13.83 18.75 19.35 18.46 17.29 16.44 19.85 18.10 26.00 16.06 14.29 15.94 26.56 29.17 26.76 12.26 15.38 44.00 23.23 23.26 23.64 31.82 12.20 31.37 38.30 17.14 K jcn_only_AA B52,F_chr3R_9488762_9491174,E_chr3R_9488770_9491174,RI_chr3R_9489655_9489713 chr3R + chr3R_9489655_9489733 chr3R_9489655_9489713 chr3R_9489631_9489654;chr3R_9489734_9489796 9.60 NA 4.35 NA NA NA NA NA 8.00 19.05 10.00 2.70 NA NA NA 0.00 NA NA NA 0.00 NA 23.81 11.76 9.38 4.35 NA 0.00 NA 4.76 13.04 10.53 5.00 6.67 15.38 NA 4.76 8.51 9.68 13.79 16.33 NA 16.13 NA 9.80 NA 14.71 NA NA 10.71 11.11 2.33 13.64 NA NA 9.52 7.14 NA NA K cassette CG32809,I_chrX_1576304_1577129,I_chrX_1576463_1577129,I_chrX_1576815_1577129,I_chrX_1577031_1577129,CEI_chrX_1579569_1579679,RI_chrX_1585391_1586471,I_chrX_1589508_1589564 chrX - chrX_1576463_1577129 chrX_1576463_1576730;chrX_1576815_1577129 chrX_1576731_1576814 chrX_1576400_1576462;chrX_1577130_1577229 61.54 NA NA NA NA 70.00 NA 77.78 66.67 66.67 NA 85.71 NA 83.33 NA 83.33 NA NA 71.43 56.25 NA 55.56 36.36 NA NA 50.00 NA NA 30.00 40.00 38.89 NA NA 61.54 54.55 NA 40.00 50.00 66.67 52.94 NA 61.54 70.00 NA NA NA NA 38.89 53.85 NA NA 62.50 NA NA 63.64 NA NA NA K jcn_only_AD RpL27,I_chr3R_21510239_21510298,RI_chr3R_21510239_21510441,I_chr3R_21510239_21510464,I_chr3R_21510239_21510656,I_chr3R_21510239_21510726 chr3R - chr3R_21510239_21510464;chr3R_21510239_21510656;chr3R_21510239_21510739;chr3R_21510239_21510680;chr3R_21510239_21510298 chr3R_21510239_21510746 chr3R_21510139_21510238;chr3R_21510747_21510756 54.55 58.62 55.00 73.49 79.59 62.50 38.89 72.58 52.81 50.91 68.75 60.00 46.43 50.00 75.00 43.90 74.47 68.89 80.22 48.42 63.64 56.25 19.57 56.52 51.22 79.75 34.78 35.29 20.31 38.89 81.90 49.25 51.58 68.81 46.67 34.29 50.70 50.00 48.21 61.26 40.85 79.72 79.17 50.79 59.63 45.07 52.00 55.91 72.64 54.55 19.23 41.86 77.98 33.33 81.56 51.92 61.00 54.64 K intron_retention nmd,CG5390 chr2L - chr2L_10303599_10303654 chr2L_10303598_10303599;chr2L_10303654_10303655 chr2L_10302457_10303598;chr2L_10303655_10303997 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 3.53 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 1.27 2.17 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 1.74 0.00 0.00 0.00 K intron_retention Lsd-1,CG10375 chr3R + chr3R_19590407_19590470 chr3R_19590406_19590407;chr3R_19590470_19590471 chr3R_19590108_19590406;chr3R_19590471_19590681 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG3793 chr2L + chr2L_15765578_15765674 chr2L_15765590_15765674 chr2L_15765675_15766128;chr2L_15765273_15765577 3.85 6.52 2.70 0.00 0.00 10.71 4.65 5.00 4.41 4.35 0.00 2.74 3.57 7.14 9.76 1.96 2.56 5.56 2.44 1.37 3.85 7.41 2.74 3.12 6.25 3.12 4.84 NA 4.35 7.32 0.00 8.70 10.00 3.57 0.00 2.38 3.51 2.27 3.85 3.92 4.65 4.41 6.90 2.78 8.51 5.71 5.17 3.85 3.03 3.85 5.63 2.50 2.86 3.85 2.70 3.39 1.54 0.00 K cassette l(3)82Fd,I_chr3R_1147660_1148709 chr3R - chr3R_1100810_1118361 chr3R_1100810_1117711;chr3R_1117802_1118361 chr3R_1117712_1117801 chr3R_1100710_1100809;chr3R_1118362_1118563 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.68 0.00 1.30 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 1.47 1.54 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA noncoding_16269,I_chr3R_8192634_8193249,GstD1 chr3R - chr3R_8194298_8194924 chr3R_8194316_8194924 chr3R_8194925_8194962;chr3R_8193539_8194297 0.51 1.49 0.35 0.62 0.00 1.22 0.29 0.27 1.06 0.51 1.06 1.17 0.00 0.83 0.90 0.00 0.57 0.48 0.35 0.94 0.92 0.88 1.18 0.00 0.00 0.71 1.05 0.77 0.00 0.00 0.00 1.56 1.01 1.20 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.21 0.53 0.53 1.60 0.47 0.00 0.49 1.12 0.58 0.00 0.64 1.36 0.93 0.40 0.48 0.00 0.53 K intron_retention CG14964,RE_chr3L_3177668_3178196 chr3L - chr3L_3177670_3178200 chr3L_3177669_3177670;chr3L_3178200_3178201 chr3L_3176906_3177669;chr3L_3178201_3178296 6.67 NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG12030 chr3L + chr3L_649771_650232 chr3L_649770_649771;chr3L_650232_650233 chr3L_649702_649770;chr3L_650233_650523 81.82 88.89 66.67 80.00 NA 100.00 95.00 76.92 76.92 87.50 NA 100.00 80.00 NA 92.31 71.43 NA 69.23 61.54 67.65 NA NA 88.89 72.73 NA NA 83.33 NA 88.89 NA 86.96 NA NA 81.25 NA NA 92.31 70.00 66.67 NA NA 81.82 NA 87.50 NA NA 87.50 NA 78.95 NA 87.50 NA 91.67 NA 88.89 60.00 80.00 NA N jcn_only_AA CG32138 chr3L + chr3L_14058259_14058688;chr3L_14058259_14058715 chr3L_14058259_14059498 chr3L_14058172_14058258;chr3L_14059499_14060368 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.94 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.29 0.00 0.00 0.00 0.00 2.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.26 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.40 4.52 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Myo61F,mtacp1,I_chr3L_1330291_1330865,I_chr3L_1330291_1331279,RI_chr3L_1330929_1331041,l(3)02640 chr3L + chr3L_1330950_1331041 chr3L_1330949_1330950;chr3L_1331041_1331042 chr3L_1330866_1330949;chr3L_1331042_1331054 98.25 98.18 97.06 96.83 97.62 96.88 95.38 98.25 98.95 100.00 97.22 98.67 100.00 96.15 100.00 97.22 96.43 96.67 96.00 97.87 100.00 94.74 98.44 96.97 97.06 96.67 98.57 97.78 97.92 100.00 100.00 100.00 98.11 98.28 97.14 97.50 98.48 100.00 98.72 98.55 100.00 98.65 100.00 100.00 98.21 98.41 96.72 100.00 100.00 98.11 98.46 100.00 97.22 100.00 93.75 98.44 98.31 97.96 K intron_retention RpS4,Syx13,RI_chr3L_13037959_13038017,CG11279 chr3L + chr3L_13035115_13035209 chr3L_13035114_13035115;chr3L_13035209_13035210 chr3L_13035082_13035114;chr3L_13035210_13035468 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.02 0.00 0.00 0.16 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 K intron_retention Atg1,I_chr3L_12790957_12792478 chr3L - chr3L_12778909_12778970 chr3L_12778908_12778909;chr3L_12778970_12778971 chr3L_12778772_12778908;chr3L_12778971_12780128 0.00 0.00 0.00 1.85 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 2.70 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG3164,I_chr2L_125267_126140,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_126228_128799 chr2L_126228_126309 chr2L_126141_126227;chr2L_128800_128899 0.78 0.00 0.84 1.95 1.44 0.93 0.28 0.27 1.00 1.42 0.00 0.78 1.06 0.43 0.34 0.38 0.43 1.44 0.00 1.05 0.00 1.36 0.76 1.04 1.76 0.75 1.03 1.57 0.00 0.90 0.80 0.00 1.51 0.59 1.07 0.82 0.81 0.71 0.31 0.00 0.00 0.60 0.00 0.28 0.00 1.32 0.48 1.12 0.67 2.16 1.30 0.00 0.00 2.78 0.37 1.23 1.11 1.00 K intron_retention noncoding_23420,hep chrX - chrX_12975152_12975545 chrX_12975151_12975152;chrX_12975545_12975546 chrX_12975085_12975151;chrX_12975546_12976097 1.61 0.00 3.45 4.49 0.00 0.00 9.09 1.41 2.11 0.00 6.45 4.30 6.25 0.00 4.65 0.00 0.00 0.00 4.55 1.61 5.88 2.70 4.88 0.00 1.67 0.00 6.35 4.00 2.13 0.00 0.00 0.00 3.39 0.00 0.00 1.39 0.00 0.00 3.09 4.60 4.35 4.10 0.00 3.45 2.13 3.12 0.00 0.00 7.81 0.00 0.00 8.33 0.00 0.00 4.17 0.00 2.13 0.00 K intron_retention rump,RI_chr3R_5335093_5335157,I_chr3R_5338175_5338299 chr3R - chr3R_5333109_5335157 chr3R_5333108_5333109;chr3R_5335157_5335158 chr3R_5331980_5333108;chr3R_5335158_5335257 18.62 25.00 21.43 56.52 27.27 35.71 40.91 37.50 43.33 6.25 41.67 37.04 20.00 45.45 NA 46.15 NA 25.00 NA 90.00 50.00 20.41 14.89 11.90 22.22 NA 34.62 17.65 6.35 13.64 8.77 11.54 16.92 55.00 4.35 20.00 7.55 9.68 6.52 12.00 18.00 29.63 NA 12.96 1.79 6.85 4.35 10.45 34.78 19.23 16.98 20.00 13.04 8.33 27.78 8.33 6.67 13.64 K intron_retention I_chr2R_4783150_4783708,Ggamma1,noncoding_5300 chr2R + chr2R_4789028_4789641 chr2R_4789027_4789028;chr2R_4789641_4789642 chr2R_4789007_4789027;chr2R_4789642_4789782 53.33 53.33 62.50 86.96 NA NA 57.14 78.12 61.11 26.32 37.50 59.52 52.00 68.42 71.43 85.19 77.78 77.78 73.68 67.86 54.55 13.79 42.86 66.67 30.77 53.85 47.06 NA 30.00 45.45 71.43 33.33 45.00 84.00 71.43 56.25 47.62 NA 41.67 45.16 23.08 76.47 53.33 35.71 28.57 48.28 44.44 36.00 76.00 NA 50.00 40.00 NA 54.55 58.82 52.94 33.33 41.38 K alternative_acceptor msps,I_chr3R_11877071_11877796 chr3R + chr3R_11885098_11885185;chr3R_11885098_11885206 chr3R_11885098_11885182 chr3R_11884965_11885097;chr3R_11885207_11885406 52.94 65.00 50.00 57.89 41.67 40.00 61.90 50.00 48.72 71.43 64.29 61.54 50.00 50.00 50.00 53.33 37.50 43.75 54.55 47.22 53.33 60.00 50.00 61.29 66.67 40.00 40.91 54.55 56.25 47.37 50.00 50.00 52.94 48.00 61.54 63.64 54.35 52.17 51.85 58.82 35.71 54.17 50.00 58.62 50.00 61.90 42.86 56.52 53.57 54.17 56.67 61.90 41.18 42.86 66.67 51.85 42.86 57.14 K intron_retention Sp212 chr3R - chr3R_10049255_10049364 chr3R_10049254_10049255;chr3R_10049364_10049365 chr3R_10048474_10049254;chr3R_10049365_10049530 6.67 6.38 0.00 7.94 15.38 8.89 9.52 6.67 9.76 0.00 8.33 5.56 0.00 8.11 5.26 6.38 14.29 6.67 8.51 8.11 8.89 14.52 6.25 4.65 0.00 6.06 5.56 NA 0.00 10.00 9.88 6.67 2.56 8.82 4.55 8.70 9.76 8.11 0.00 17.31 0.00 7.69 6.67 9.68 6.25 6.67 4.35 8.70 7.22 6.00 9.52 19.05 5.56 0.00 6.25 10.81 3.19 7.14 K intron_retention Pez chr2L - chr2L_6333422_6333483 chr2L_6333421_6333422;chr2L_6333483_6333484 chr2L_6332878_6333421;chr2L_6333484_6333807 0.00 0.00 0.00 2.78 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD RpL17,I_chrX_6637182_6638207,RI_chrX_6637182_6637528,I_chrX_6637182_6637973,snoRNA:Psi28S-1232 chrX - chrX_6637182_6638228;chrX_6637182_6638141;chrX_6637182_6637982 chrX_6637182_6638178 chrX_6637093_6637181;chrX_6638229_6638235 2.17 1.98 3.88 3.45 3.60 1.94 3.79 0.76 3.59 4.17 0.00 3.83 0.82 4.44 4.31 4.40 2.56 2.08 2.97 1.64 2.20 0.99 2.17 6.48 1.15 2.26 4.60 4.49 4.33 2.03 3.51 1.15 1.13 4.55 0.98 2.06 7.04 2.50 2.13 0.52 0.41 2.54 1.82 1.10 3.35 0.00 0.78 0.39 3.23 6.80 1.10 5.08 1.43 2.11 2.34 0.75 1.69 1.35 K intron_retention luna,I_chr2R_6918139_6987036,I_chr2R_6940012_6987036,I_chr2R_6973287_6987036 chr2R - chr2R_6878630_6987036 chr2R_6878629_6878630;chr2R_6987036_6987037 chr2R_6878532_6878629;chr2R_6987037_6987136 2.87 5.13 0.00 4.65 0.00 0.00 0.00 7.84 4.76 0.00 0.00 1.85 5.26 19.05 0.00 0.00 10.53 10.53 0.00 5.63 3.45 4.12 5.06 10.94 0.00 0.00 1.54 5.56 0.00 3.03 2.70 8.33 0.00 2.38 0.00 0.00 2.27 4.35 6.67 3.39 NA 4.44 0.00 1.30 0.00 10.26 9.09 5.41 9.76 2.70 3.85 10.53 0.00 6.45 5.71 2.70 2.63 0.00 K intron_retention Uev1A,I_chr3L_5358186_5358359,I_chr3L_5358186_5358415,CREI_chr3L_5358186_5358453,I_chr3L_5358186_5359072,RI_chr3L_5358186_5359074,I_chr3L_5360875_5360954 chr3L - chr3L_5358186_5359228 chr3L_5358185_5358186;chr3L_5359228_5359229 chr3L_5358086_5358185;chr3L_5359229_5359418 0.25 0.00 0.00 0.25 0.00 0.37 1.38 0.24 0.22 1.41 0.00 0.78 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 4.12 0.74 0.56 0.00 0.71 1.68 1.63 0.00 0.00 0.64 0.85 1.80 0.00 4.76 3.85 0.44 0.00 0.00 0.52 2.00 0.29 0.00 0.72 0.00 3.12 0.00 0.00 0.00 1.83 1.43 1.23 0.00 0.00 0.00 0.83 0.42 1.11 K intron_retention Gprk2 chr3R + chr3R_27281178_27281249 chr3R_27281177_27281178;chr3R_27281249_27281250 chr3R_27280929_27281177;chr3R_27281250_27281407 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.93 0.00 0.00 3.45 0.00 2.27 3.12 0.00 0.00 0.00 0.00 1.49 0.00 0.00 1.79 0.00 0.00 0.00 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention chic,RI_chr2L_5976783_5980950,I_chr2L_5979705_5979818,I_chr2L_5979705_5979941,RI_chr2L_5979705_5979951,I_chr2L_5979705_5979953,I_chr2L_5979705_5980025,I_chr2L_5979705_5980213,I_chr2L_5979705_5980370,I_chr2L_5979705_5980558,I_chr2L_5979705_5980632,I_chr2L_5979705_5980639,RI_chr2L_5979705_5980734 chr2L - chr2L_5979705_5979818 chr2L_5979704_5979705;chr2L_5979818_5979819 chr2L_5979605_5979704;chr2L_5979819_5979887 0.00 0.00 0.00 2.45 0.00 NA 0.00 0.00 6.58 NA 0.00 8.11 0.00 0.00 0.00 6.67 0.00 9.68 0.00 2.86 0.00 24.00 0.00 0.00 NA 0.00 8.33 34.78 20.00 0.00 0.00 0.00 3.92 0.00 12.50 0.00 3.45 NA NA 11.90 0.00 4.17 3.23 0.00 0.00 0.00 NA 0.00 4.65 0.00 7.41 0.00 0.00 0.00 0.00 4.00 5.71 0.00 K alternative_donor CG1647 chr3R + chr3R_24646630_24646780 chr3R_24646719_24646780 chr3R_24646781_24650230;chr3R_24646510_24646629 87.50 NA 100.00 92.31 75.00 NA 100.00 78.57 91.67 NA NA 93.33 NA 85.71 NA 87.50 NA NA NA 81.25 NA 100.00 91.67 NA NA 87.50 83.33 100.00 80.00 88.89 100.00 NA 69.23 90.91 NA 85.71 87.50 85.71 NA 71.43 NA 86.67 100.00 NA NA 88.89 NA 92.31 83.33 NA NA 83.33 NA NA 100.00 NA NA 83.33 K intron_retention Cnx99A,I_chr3R_25144335_25145173,I_chr3R_25145243_25145309,I_chr3R_25145256_25145426 chr3R - chr3R_25141602_25141666 chr3R_25141601_25141602;chr3R_25141666_25141667 chr3R_25140982_25141601;chr3R_25141667_25141891 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 K jcn_only_AD sdk,I_chrX_581050_581605,I_chrX_581108_581660,I_chrX_625220_634459,I_chrX_636395_636562 chrX + chrX_581160_581605;chrX_581108_581605;chrX_580974_581605 chrX_581043_581605 chrX_581606_581705;chrX_580950_580973 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor Fak56D,F_chr2R_15323055_15323097 chr2R - chr2R_15324149_15324362;chr2R_15324149_15324555 chr2R_15324149_15324719 chr2R_15324053_15324148;chr2R_15324720_15324721 4.55 0.00 15.00 9.09 10.00 7.69 11.11 5.26 2.56 NA 8.33 3.45 13.33 0.00 21.05 0.00 0.00 6.25 17.65 5.26 0.00 16.67 4.00 0.00 NA 6.25 0.00 9.09 NA 0.00 11.76 0.00 5.00 4.55 0.00 0.00 0.00 0.00 0.00 7.41 0.00 13.33 0.00 20.00 16.67 0.00 0.00 4.35 11.54 14.29 0.00 0.00 14.29 NA NA NA 0.00 10.00 K alternative_donor CG1674,F_chr4_252231_252560,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_251522_252560;chr4_252254_252560 chr4_252227_252560 chr4_252561_252603;chr4_251483_251521 90.00 100.00 100.00 83.33 NA 66.67 100.00 77.78 90.91 NA NA 87.50 83.33 100.00 100.00 88.89 100.00 50.00 100.00 66.67 NA NA 50.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 50.00 NA 50.00 NA NA 90.00 100.00 100.00 33.33 NA NA 75.00 NA 75.00 66.67 K intron_retention CG9205 chr3L + chr3L_1035957_1036031 chr3L_1035956_1035957;chr3L_1036031_1036032 chr3L_1035560_1035956;chr3L_1036032_1036298 0.48 0.45 0.48 0.78 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.27 0.00 1.40 0.00 0.00 0.00 0.00 1.12 0.55 0.00 1.07 0.79 0.39 1.32 0.00 1.40 3.33 0.00 0.70 0.00 0.72 0.43 0.69 0.00 0.00 0.63 0.00 1.04 0.53 1.06 1.09 0.72 0.93 0.61 0.55 0.73 0.00 0.75 0.00 0.00 0.00 1.75 0.00 0.48 0.00 1.09 0.68 K jcn_only_AD slgA,I_chrX_21253735_21253820 chrX + chrX_21245768_21247146;chrX_21245849_21247146 chrX_21245487_21247146 chrX_21247147_21247693;chrX_21245405_21245486 71.07 NA NA NA NA NA NA 85.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 57.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD l(2)k01209,I_chr2R_13308079_13310771,I_chr2R_13309452_13310771,RI_chr2R_13310877_13311160 chr2R + chr2R_13309452_13311160;chr2R_13308486_13311160;chr2R_13308079_13311160 chr2R_13309417_13311160 chr2R_13311161_13311260;chr2R_13307979_13308078 2.09 1.32 0.90 0.78 0.00 3.30 0.53 0.00 1.62 4.55 2.63 2.51 0.00 1.39 2.11 2.09 0.00 2.44 3.16 1.67 2.11 3.94 1.59 2.31 3.03 0.00 1.85 3.77 1.48 2.01 9.73 2.97 3.59 0.69 0.00 2.94 1.59 3.55 3.49 10.06 1.48 4.09 4.17 3.41 2.33 0.78 1.69 1.92 0.59 2.50 1.54 3.16 0.99 2.50 2.04 2.24 2.00 3.03 K jcn_only_AA I_chr2L_10341933_10342155,CG5025 chr2L + chr2L_10343605_10343685 chr2L_10343605_10343658 chr2L_10343538_10343604;chr2L_10343686_10343750 100.00 100.00 100.00 100.00 100.00 95.65 98.68 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.39 100.00 NA NA NA 100.00 NA 100.00 100.00 NA 100.00 95.65 98.95 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 96.55 100.00 NA NA 100.00 100.00 NA 100.00 K intron_retention His4r chr3R + chr3R_10451952_10452015 chr3R_10451951_10451952;chr3R_10452015_10452016 chr3R_10451748_10451951;chr3R_10452016_10452329 0.00 0.00 0.16 0.06 0.09 0.00 0.00 0.08 0.04 0.00 0.00 0.12 0.00 0.00 0.10 0.00 0.18 0.00 0.00 0.16 0.00 0.00 0.05 0.04 0.00 0.06 0.27 0.08 0.15 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.04 0.00 0.06 0.00 0.06 0.00 0.00 0.00 0.07 0.10 0.19 0.00 0.00 0.00 0.08 0.06 0.13 0.00 0.00 K jcn_only_AA CG10898,I_chr3R_7384087_7384155 chr3R + chr3R_7384087_7384155 chr3R_7384087_7384147 chr3R_7384024_7384086;chr3R_7384156_7384215 100.00 NA 95.00 100.00 NA NA 100.00 95.24 100.00 NA NA 96.30 NA NA NA 95.24 NA NA 100.00 92.86 NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA 95.45 NA 100.00 NA NA NA NA NA NA 93.10 NA NA NA NA NA NA NA 95.45 NA K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2813977;chr2R_2814097_2814174;chr2R_2814327_2814894;chr2R_2815657_2816013;chr2R_2816342_2816577;chr2R_2816779_2817327;chr2R_2817604_2817753 chr2R_2813978_2814096;chr2R_2814175_2814326;chr2R_2814895_2815656;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817328_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG42568,RI_chr2R_20046540_20046671,RI_chr2R_20046609_20046675,RI_chr2R_20046743_20046821 chr2R - chr2R_20046609_20046675;chr2R_20046609_20046667 chr2R_20046609_20046671 chr2R_20046509_20046608;chr2R_20046676_20046742 64.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 64.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention growl chr3R + chr3R_231534_231588 chr3R_231533_231534;chr3R_231588_231589 chr3R_231323_231533;chr3R_231589_232914 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG4199,I_chrX_1962457_1964222 chrX - chrX_1965614_1965872;chrX_1965614_1967409;chrX_1965614_1966582 chrX_1965614_1967149 chrX_1965393_1965613;chrX_1967410_1967460 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention trio,I_chr3L_999683_1009321 chr3L - chr3L_999683_1003395 chr3L_999682_999683;chr3L_1003395_1003396 chr3L_999617_999682;chr3L_1003396_1003653 1.73 1.73 1.43 1.83 1.38 2.38 5.88 0.70 1.28 0.00 9.90 0.85 2.78 1.64 2.91 2.50 0.00 8.03 1.89 3.57 5.56 1.22 1.59 1.52 1.27 1.69 2.99 4.42 10.67 2.31 3.10 2.15 1.41 2.22 1.36 2.25 1.29 0.90 1.62 2.97 3.54 1.30 0.00 1.00 1.26 0.74 1.76 1.57 2.02 2.04 2.29 2.65 2.20 1.64 1.10 1.23 1.09 2.50 K cassette CG13124,I_chr2L_9905292_9905551,I_chr2L_9905292_9905677,RI_chr2L_9907784_9908405,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9905084_9905874;chr2L_9905053_9905874 chr2L_9905053_9905137,chr2L_9905084_9905137;chr2L_9905292_9905874 chr2L_9905138_9905291 chr2L_9904827_9905052;chr2L_9905875_9905971 34.78 39.62 33.96 14.14 19.15 27.50 13.64 30.51 33.68 26.47 25.81 67.35 22.58 28.21 32.61 18.52 20.00 34.78 27.27 23.81 19.51 70.25 35.96 34.85 57.50 30.00 43.75 51.28 43.69 39.44 25.86 41.94 43.88 30.86 38.30 25.45 42.11 36.92 39.29 38.62 43.94 31.19 31.43 52.86 46.51 41.30 44.00 43.96 33.72 50.00 33.33 34.78 41.18 37.50 30.36 29.63 28.85 39.22 K cassette CG15279,F_chr2L_14847018_14848004,F_chr2L_14848345_14848673,I_chr2L_14849367_14851281 chr2L - chr2L_14846495_14848004 chr2L_14846495_14846789;chr2L_14847058_14848004 chr2L_14846790_14847057 chr2L_14845753_14846494;chr2L_14848005_14848104 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA 100.00 85.71 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA NA NA NA 100.00 100.00 K intron_retention fl(2)d,I_chr2R_9709063_9711788 chr2R - chr2R_9709631_9711296 chr2R_9709630_9709631;chr2R_9711296_9711297 chr2R_9709566_9709630;chr2R_9711297_9711975 63.97 60.00 NA 84.62 NA NA NA 81.25 65.38 NA NA 85.00 NA NA NA 91.67 NA 50.00 100.00 68.42 NA 77.78 55.00 43.75 63.64 NA 71.43 NA NA NA 46.15 NA 60.00 71.43 NA 46.15 48.15 20.00 46.15 66.67 NA 64.29 NA NA NA NA 72.73 NA 72.73 NA 58.33 54.55 NA NA 50.00 NA NA NA K intron_retention me31B chr2L + chr2L_10241781_10241845 chr2L_10241780_10241781;chr2L_10241845_10241846 chr2L_10241133_10241780;chr2L_10241846_10242154 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.46 0.00 0.00 0.75 1.23 0.00 0.00 0.00 0.78 1.65 0.00 0.00 0.00 0.00 0.00 2.05 0.00 0.00 0.00 0.00 0.00 0.00 1.07 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette tomosyn,I_chrX_12531219_12531470,I_chrX_12534873_12541731,noncoding_23357,I_chrX_12548772_12549203 chrX + chrX_12534873_12545142 chrX_12534873_12542569;chrX_12542817_12545142 chrX_12542570_12542816 chrX_12534773_12534872;chrX_12545143_12545259 93.33 92.86 94.12 100.00 88.89 90.00 76.47 66.67 86.21 100.00 90.91 100.00 88.89 88.89 88.89 93.33 NA 90.00 77.78 94.74 100.00 85.71 95.65 88.00 100.00 77.78 93.33 NA 93.75 93.33 75.00 90.00 95.65 95.45 91.67 93.33 95.74 95.00 96.67 96.00 88.89 96.67 80.00 87.50 93.33 93.75 100.00 95.65 83.33 83.33 95.65 87.50 94.12 88.89 92.31 92.86 95.24 100.00 K jcn_only_AA NUCB1,RI_chr3L_17794900_17794991 chr3L - chr3L_17792653_17794991 chr3L_17794900_17794991 chr3L_17794992_17795091;chr3L_17791160_17792652 0.34 0.60 0.32 7.19 0.82 0.34 0.34 1.10 0.31 0.00 0.32 0.58 0.62 0.88 0.58 0.36 0.45 0.37 0.80 0.24 0.98 0.19 0.24 0.00 1.49 0.00 0.00 0.39 0.53 0.25 0.00 0.36 0.34 0.25 0.00 0.00 0.00 0.36 0.46 0.93 0.50 0.67 0.00 0.00 0.39 0.24 0.78 0.62 0.79 0.32 1.02 0.54 0.00 0.00 0.33 0.31 0.21 0.15 K alternative_donor CG12428,I_chr3R_23531574_23532266 chr3R - chr3R_23531574_23531786;chr3R_23531574_23532276 chr3R_23531574_23531981 chr3R_23531474_23531573;chr3R_23532277_23532366 63.64 50.00 55.56 41.18 80.00 83.33 63.64 63.64 46.15 50.00 NA 46.15 NA 60.00 71.43 87.50 57.14 75.00 85.71 42.86 60.00 68.75 53.33 75.00 71.43 66.67 42.86 41.67 83.33 70.00 91.67 NA 75.00 62.50 36.36 85.71 85.71 42.86 100.00 64.29 100.00 46.15 100.00 55.56 NA 57.14 55.56 75.00 50.00 75.00 63.64 50.00 NA 66.67 42.86 100.00 42.86 30.00 K intron_retention Gyk,I_chr3L_207277_208117 chr3L - chr3L_202430_202488 chr3L_202429_202430;chr3L_202488_202489 chr3L_202094_202429;chr3L_202489_203619 0.00 0.00 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 7.41 2.70 0.00 0.00 0.00 1.49 8.33 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 1.12 0.00 0.00 0.00 1.72 1.23 0.00 0.00 4.11 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG1622,REI_chrX_13191277_13191339,I_chrX_13191916_13192167,I_chrX_13192409_13192738,EI_chrX_13192857_13192928 chrX + chrX_13191273_13191339 chrX_13191277_13191339 chrX_13191340_13191439;chrX_13191177_13191272 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 1.20 0.00 1.85 1.82 2.08 0.00 0.00 0.00 1.09 0.00 2.13 0.00 0.98 1.63 0.00 0.76 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.90 1.89 1.28 1.04 1.32 1.18 0.00 0.00 N jcn_only_AD Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11837971_11838112;chr2R_11837971_11838672 chr2R_11837971_11838662 chr2R_11837919_11837970;chr2R_11838673_11838762 100.00 100.00 100.00 100.00 100.00 99.27 99.02 100.00 99.52 100.00 99.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.48 100.00 100.00 100.00 100.00 99.12 100.00 100.00 100.00 99.45 100.00 100.00 100.00 99.29 100.00 100.00 100.00 100.00 99.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.66 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG4630,RI_chr2R_9103472_9103634,I_chr2R_9103765_9103852,I_chr2R_9103956_9104108,RI_chr2R_9104206_9104265 chr2R - chr2R_9103472_9103527 chr2R_9103471_9103472;chr2R_9103527_9103528 chr2R_9103372_9103471;chr2R_9103528_9103600 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon jar,F_chr3R_20084972_20096616 chr3R - chr3R_20079847_20080715 chr3R_20080401_20080715 chr3R_20079726_20079846 chr3R_20080244_20080400 chr3R_20080716_20080946 95.65 100.00 93.33 100.00 100.00 100.00 92.31 100.00 95.00 100.00 87.50 94.44 100.00 87.50 100.00 92.31 100.00 100.00 100.00 90.00 92.86 100.00 94.12 92.31 100.00 90.00 93.75 NA 100.00 100.00 100.00 100.00 100.00 95.00 93.33 100.00 100.00 100.00 100.00 95.65 90.00 95.83 85.71 92.86 100.00 92.86 90.91 100.00 95.45 91.67 93.75 90.91 NA 100.00 92.31 100.00 90.00 91.67 K intron_retention CG15609,I_chr2R_12898038_12898391,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12898041_12898391 chr2R_12898040_12898041;chr2R_12898391_12898392 chr2R_12897841_12898040;chr2R_12898392_12898481 3.45 0.00 0.00 0.00 0.00 0.00 6.90 5.41 5.10 0.00 8.82 3.19 6.82 10.00 5.77 4.17 2.22 2.33 0.00 4.00 0.00 0.00 5.17 3.28 6.67 0.00 3.45 9.09 0.00 6.45 0.00 4.65 0.00 2.35 0.00 4.65 3.57 6.52 2.63 7.14 6.25 3.12 0.00 1.72 6.06 5.77 3.57 5.00 3.03 0.00 0.00 3.85 0.00 4.88 12.20 10.34 2.33 6.67 K intron_retention Ctr1A,I_chrX_6558480_6559032 chrX + chrX_6559720_6560882 chrX_6559719_6559720;chrX_6560882_6560883 chrX_6559472_6559719;chrX_6560883_6561458 0.00 0.00 0.00 0.00 3.85 0.00 0.00 1.19 4.35 0.00 0.00 2.56 6.45 6.82 0.00 0.00 0.00 0.00 0.00 0.81 0.00 2.78 0.00 0.00 0.00 0.00 2.44 6.67 5.88 4.17 0.00 0.00 0.00 0.00 0.00 2.94 3.10 2.90 3.15 4.08 0.00 0.00 0.00 1.72 0.00 3.33 0.00 2.13 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 K alternative_donor I_chrX_7993650_7995126,Gclc chrX - chrX_8009614_8010024 chrX_8009614_8009706 chrX_8009450_8009613;chrX_8010025_8010150 4.24 4.94 6.90 9.30 6.98 9.80 4.17 7.14 3.88 2.94 7.32 7.86 5.00 3.70 9.23 6.40 5.71 6.67 5.00 4.55 2.27 3.90 2.63 1.63 2.22 10.00 2.60 3.28 15.44 1.97 4.69 4.92 5.00 5.79 0.93 2.84 0.44 1.41 3.49 2.51 7.06 6.84 3.77 1.00 5.26 4.24 2.47 3.89 6.54 3.37 3.21 5.00 3.85 3.77 7.46 2.78 3.96 4.94 K alternative_donor sec24,I_chr2R_5768722_5769689 chr2R - chr2R_5768722_5769689;chr2R_5768722_5769687 chr2R_5768722_5769384 chr2R_5768622_5768721;chr2R_5769690_5769789 0.00 0.00 3.57 1.72 0.00 3.03 0.00 0.00 3.03 0.00 4.55 1.59 0.00 0.00 2.27 2.04 0.00 3.12 0.00 1.75 4.17 2.04 1.75 0.00 0.00 0.00 1.89 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 1.79 0.00 0.00 1.72 2.63 3.03 0.00 0.00 4.35 0.00 0.00 3.45 1.37 0.00 0.00 0.00 1.96 0.00 0.00 0.00 K alternative_acceptor CG1516,cbx,I_chr2R_5752557_5752628,RI_chr2R_5752988_5757801 chr2R - chr2R_5752557_5752628 chr2R_5752575_5752628 chr2R_5752629_5752728;chr2R_5752457_5752556 100.00 NA 87.50 94.74 NA 88.89 92.86 92.86 100.00 NA NA 91.67 100.00 NA 100.00 100.00 NA 85.71 100.00 100.00 NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 92.86 NA 100.00 NA 90.00 NA NA 100.00 90.00 100.00 NA NA 100.00 100.00 100.00 91.67 91.67 K multi_cassette brp chr2R + chr2R_5417712_5421306 chr2R_5417712_5419850;chr2R_5420034_5420168;chr2R_5420490_5420850;chr2R_5421040_5421306 chr2R_5419851_5420033;chr2R_5420169_5420489;chr2R_5420851_5421039 chr2R_5417595_5417711;chr2R_5421307_5423073 100.00 75.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 50.00 NA 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 80.00 80.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 NA 80.00 100.00 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 100.00 100.00 K intron_retention dah,I_chrX_15223901_15223968,I_chrX_15232958_15233665 chrX + chrX_15222657_15222857 chrX_15222656_15222657;chrX_15222857_15222858 chrX_15222406_15222656;chrX_15222858_15222985 100.00 100.00 100.00 91.67 NA 100.00 100.00 100.00 95.45 NA 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 95.45 100.00 NA 94.44 100.00 100.00 100.00 100.00 NA NA 91.67 100.00 NA 88.89 100.00 100.00 100.00 100.00 93.33 94.74 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 94.12 92.86 100.00 92.86 NA NA 100.00 100.00 100.00 90.00 N cassette CG42574,I_chr3R_618802_618939,I_chr3R_621543_625413,I_chr3R_621546_625413 chr3R - chr3R_620787_622210 chr3R_620787_621458;chr3R_621543_622210 chr3R_621459_621542 chr3R_618940_620786;chr3R_622211_622332 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 68.33 100.00 100.00 100.00 100.00 100.00 76.74 65.22 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA K intron_retention EloA chr3R + chr3R_19079675_19079739 chr3R_19079674_19079675;chr3R_19079739_19079740 chr3R_19079475_19079674;chr3R_19079740_19080027 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor mthl3 chr2R - chr2R_13338538_13338593;chr2R_13338538_13340031;chr2R_13338538_13339957;chr2R_13338538_13340007 chr2R_13338538_13340067 chr2R_13338407_13338537;chr2R_13340068_13340078 0.00 11.11 0.00 9.52 0.00 0.00 0.00 3.45 0.00 0.00 7.69 9.09 0.00 0.00 8.33 0.00 0.00 8.33 14.29 0.00 0.00 0.00 14.29 0.00 0.00 16.67 0.00 NA 0.00 0.00 5.88 NA 16.67 0.00 14.29 0.00 0.00 0.00 NA 12.50 0.00 4.17 7.69 0.00 NA 0.00 0.00 20.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 14.29 N jcn_only_AD CG8531,RI_chr2R_10144869_10144912 chr2R + chr2R_10145224_10145276;chr2R_10145138_10145276 chr2R_10145070_10145276 chr2R_10145277_10145393;chr2R_10144926_10145069 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.96 9.30 7.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA ATPsyn-beta chr4 + chr4_1052580_1053532 chr4_1052580_1053514 chr4_1052474_1052579;chr4_1053533_1053844 0.45 0.45 0.42 0.51 0.60 0.34 0.44 0.42 0.30 0.23 0.49 0.29 0.21 0.47 0.48 0.95 0.60 0.46 0.98 0.54 0.66 1.25 0.43 0.66 0.16 0.47 0.31 0.68 0.25 0.41 0.40 0.20 0.27 0.19 1.13 0.23 0.27 0.00 0.54 0.47 1.86 0.44 0.50 0.56 0.48 0.00 0.72 0.40 0.41 0.72 0.66 0.58 0.92 0.68 0.23 0.41 0.24 0.00 K cassette Glycogenin chr2R + chr2R_17093047_17095974 chr2R_17093047_17093250;chr2R_17093320_17095974 chr2R_17093251_17093319 chr2R_17093039_17093046;chr2R_17095975_17096176 7.69 NA NA NA NA NA 0.00 NA 6.67 NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 7.69 NA NA 3.45 NA NA NA 14.29 5.88 16.67 NA 7.69 NA NA NA NA NA NA NA NA NA 14.29 K intron_retention MB8.chr3R.pasa.66,ref1,RI_chr3R_2904130_2904237,RI_chr3R_2904305_2904543,I_chr3R_2904452_2904543 chr3R - chr3R_2904305_2904543 chr3R_2904304_2904305;chr3R_2904543_2904544 chr3R_2904238_2904304;chr3R_2904544_2904643 61.50 60.00 NA 57.89 NA NA 90.00 NA 69.23 NA 60.00 55.00 58.33 NA NA 90.91 NA NA 58.33 76.47 NA 85.19 64.71 NA 69.23 60.00 61.90 66.67 71.43 NA 60.00 60.00 NA 83.33 NA 66.67 61.11 60.00 45.45 58.82 NA 72.22 NA NA 70.00 NA 58.33 53.85 83.33 53.33 70.00 60.00 NA 80.00 NA NA NA NA K intron_retention ras chrX + chrX_10640017_10640108 chrX_10640016_10640017;chrX_10640108_10640109 chrX_10639995_10640016;chrX_10640109_10640259 1.72 3.51 4.44 2.86 0.00 0.00 0.00 4.29 0.86 0.00 0.00 1.85 9.38 0.00 7.84 1.67 0.00 2.38 2.56 2.06 0.00 4.40 4.72 1.35 0.00 0.00 7.14 11.90 1.72 0.00 0.00 1.92 0.91 0.00 3.64 0.00 0.00 5.26 2.30 1.54 1.32 2.02 3.23 0.00 2.86 1.10 0.00 3.85 5.00 5.63 2.15 0.00 2.56 0.00 3.57 0.00 2.63 1.46 K intron_retention Msp-300,I_chr2L_5197634_5197866,snoRNA:Psi18S-525k,noncoding_1106 chr2L + chr2L_5202303_5203115 chr2L_5202302_5202303;chr2L_5203115_5203116 chr2L_5199343_5202302;chr2L_5203116_5203261 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 2.86 0.00 0.00 0.00 K alternative_last_exon I_chrX_15223901_15223968,HDAC6,I_chrX_15232958_15233665 chrX + chrX_15232738_15233659 chrX_15232738_15232869 chrX_15233660_15234394 chrX_15232870_15233125 chrX_15232706_15232737 70.00 66.67 87.50 37.50 75.00 60.00 75.00 44.44 76.92 75.00 75.00 85.71 50.00 62.50 50.00 83.33 66.67 88.89 85.71 72.22 66.67 76.92 71.43 70.00 66.67 37.50 83.33 50.00 54.55 62.50 85.71 58.82 58.82 66.67 83.33 75.00 76.92 62.50 81.25 66.67 62.50 92.31 66.67 58.33 83.33 60.00 84.62 64.29 75.00 76.92 76.92 80.00 63.64 66.67 77.78 70.00 83.33 63.16 K intron_retention Nmnat chr3R + chr3R_20772877_20772984 chr3R_20772876_20772877;chr3R_20772984_20772985 chr3R_20772676_20772876;chr3R_20772985_20773115 3.33 NA NA NA NA NA NA NA 10.53 NA NA 6.25 NA NA NA 0.00 NA NA NA 9.09 NA 7.41 6.25 6.90 0.00 NA 3.33 0.00 6.25 NA 25.00 0.00 0.00 21.43 NA 0.00 0.00 0.00 8.70 2.94 0.00 5.56 NA 0.00 0.00 5.26 5.56 0.00 14.29 6.06 0.00 NA 0.00 0.00 NA 8.00 9.52 3.33 K alternative_acceptor CG6000 chr3R + chr3R_19880177_19880324 chr3R_19880177_19880320 chr3R_19880138_19880176;chr3R_19880325_19880822 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA 100.00 100.00 NA NA NA 100.00 NA 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 K intron_retention Mtch,E_chr3L_185249_186012,I_chr3L_185367_185925 chr3L + chr3L_185865_185925 chr3L_185864_185865;chr3L_185925_185926 chr3L_185377_185864;chr3L_185926_186025 1.12 0.00 0.00 3.75 0.00 2.27 2.35 2.33 1.94 0.00 0.00 1.83 3.12 3.12 2.04 0.00 0.00 0.00 2.50 1.88 0.00 1.12 1.32 0.00 0.00 3.23 3.00 2.75 0.00 2.47 7.32 0.87 0.96 1.30 1.23 2.15 1.82 0.00 1.29 0.76 0.00 0.00 0.00 0.00 0.00 1.33 0.83 0.00 1.55 0.84 2.00 0.00 1.96 0.68 0.00 0.73 1.16 1.55 K intron_retention Cip4,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4363128_4363747 chr3L_4363127_4363128;chr3L_4363747_4363748 chr3L_4363028_4363127;chr3L_4363748_4363755 90.00 100.00 NA 90.00 NA NA 100.00 88.89 81.25 NA 100.00 92.86 NA 87.50 NA 78.57 NA NA NA 92.31 NA 100.00 81.25 91.67 100.00 NA 86.67 NA 94.44 90.00 NA 90.00 83.33 88.89 100.00 NA 100.00 NA 88.89 100.00 100.00 81.82 NA 90.91 77.78 88.24 88.89 88.24 76.92 NA 85.71 NA NA 87.50 87.50 91.67 93.33 94.12 K alternative_acceptor CG30193,CG30190 chr2R + chr2R_18812899_18813071 chr2R_18812899_18812963 chr2R_18812672_18812898;chr2R_18813072_18813135 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG5346 chr3R - chr3R_18346109_18346225 chr3R_18346108_18346109;chr3R_18346225_18346226 chr3R_18343406_18346108;chr3R_18346226_18346410 0.00 1.37 1.19 0.00 0.00 0.00 1.72 0.00 0.76 0.00 1.52 2.02 0.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 1.32 0.00 0.99 0.00 0.00 0.00 2.53 9.23 0.00 0.00 0.00 1.18 0.00 2.15 2.33 0.00 0.00 0.00 0.00 3.05 0.00 1.85 0.00 0.00 0.00 0.00 0.00 1.54 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 N jcn_only_AD Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824086_11824186;chr2R_11824086_11825790 chr2R_11824086_11824525 chr2R_11823989_11824085 82.81 81.25 NA 86.05 NA NA NA NA 89.09 NA NA 47.83 NA NA NA 55.56 NA NA NA 91.03 NA 16.67 88.00 83.33 68.97 NA 82.76 65.52 57.14 72.00 72.73 90.48 59.26 NA 84.62 80.00 91.43 90.91 94.29 80.77 NA 78.95 NA 64.44 69.57 77.50 81.40 68.75 90.32 92.68 87.88 87.88 93.02 94.59 NA 88.37 96.00 82.86 K alternative_donor Hrs,I_chr2L_2740474_2741107 chr2L + chr2L_2740474_2741107 chr2L_2740785_2741107 chr2L_2741108_2741207;chr2L_2740389_2740473 98.48 100.00 100.00 94.12 98.25 98.39 97.87 96.88 99.21 97.44 100.00 100.00 100.00 96.00 98.77 98.31 100.00 100.00 100.00 100.00 100.00 96.10 97.44 95.92 98.57 97.33 99.05 98.80 98.04 96.72 89.29 95.92 100.00 98.91 100.00 98.88 98.31 98.78 98.48 100.00 97.83 99.21 98.08 98.33 100.00 100.00 100.00 100.00 97.32 97.60 97.98 98.00 97.56 98.53 98.70 98.41 98.48 96.88 K intron_retention CG33967 chr3R - chr3R_10528912_10549032 chr3R_10528911_10528912;chr3R_10549032_10549033 chr3R_10528613_10528911;chr3R_10549033_10549997 2.11 3.85 6.56 5.00 3.85 3.33 5.97 6.76 6.47 0.00 3.57 5.32 2.63 10.53 5.26 7.89 1.92 3.23 5.56 3.01 3.77 3.80 0.00 0.00 0.00 7.27 2.78 2.11 0.00 0.00 4.08 0.00 0.00 3.12 4.17 0.00 0.86 1.79 0.00 0.00 0.00 6.25 6.00 0.00 0.00 0.00 0.00 0.00 4.30 0.00 0.00 0.00 0.00 0.00 3.08 0.00 0.00 0.00 K intron_retention sd,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15718310_15718367 chrX_15718309_15718310;chrX_15718367_15718368 chrX_15718075_15718309;chrX_15718368_15719656 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 1.07 0.00 0.00 1.41 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 1.10 0.00 0.00 0.00 K jcn_only_AD eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341925_20342041;chr3L_20341636_20342041;chr3L_20341509_20342041;chr3L_20341865_20342041;chr3L_20341486_20342041;chr3L_20341522_20342041;chr3L_20341751_20342041;chr3L_20341530_20342041;chr3L_20341629_20342041;chr3L_20341759_20342041 chr3L_20341598_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.53 NA 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG3902,snoRNA:Psi28S-2566 chr3L - chr3L_18887935_18891043 chr3L_18887934_18887935;chr3L_18891043_18891044 chr3L_18887456_18887934;chr3L_18891044_18891149 0.00 1.23 0.00 0.83 0.00 0.00 0.00 1.63 0.68 0.00 1.83 0.62 0.00 0.57 1.44 1.16 1.61 0.00 0.00 1.12 1.98 0.00 1.94 3.31 0.00 0.00 2.00 NA 0.00 0.00 0.00 0.00 0.00 1.32 2.70 0.00 0.00 0.00 2.44 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 1.16 0.00 0.00 0.55 0.00 0.00 0.00 K intron_retention RI_chr3L_201061_201173,CG13876,I_chr3L_212783_212843 chr3L + chr3L_206319_206375 chr3L_206318_206319;chr3L_206375_206376 chr3L_206071_206318;chr3L_206376_206406 20.00 25.00 NA 6.67 13.33 NA 44.44 10.00 18.75 NA NA 20.00 NA NA NA 25.00 NA NA 0.00 20.00 NA NA NA 29.41 0.00 22.22 NA NA NA 36.36 44.44 NA 31.25 18.52 NA NA NA NA NA 16.67 NA 20.00 NA NA NA 28.57 NA NA 33.33 23.53 NA NA NA NA 18.75 NA 11.11 NA K alternative_donor Gp150,I_chr2R_18205316_18205386,I_chr2R_18213233_18213308 chr2R + chr2R_18205274_18205386;chr2R_18205243_18205386;chr2R_18205282_18205386 chr2R_18205316_18205386 chr2R_18205387_18205459;chr2R_18205216_18205242 6.41 5.42 6.43 2.50 2.59 3.41 9.55 5.99 3.44 8.06 2.40 6.31 5.26 4.44 6.27 2.93 3.23 2.73 3.97 6.33 3.05 7.25 13.43 10.32 25.62 7.95 23.96 18.75 16.46 8.82 6.43 2.22 7.03 4.93 9.20 22.67 6.25 8.89 6.41 12.30 21.43 3.69 3.05 18.92 2.56 10.81 8.77 4.17 3.93 7.02 9.77 6.67 14.71 12.00 5.85 5.77 10.13 4.82 K intron_retention CG32486 chr3L - chr3L_3056376_3056485 chr3L_3056375_3056376;chr3L_3056485_3056486 chr3L_3055902_3056375;chr3L_3056486_3056752 96.00 98.00 95.31 98.59 93.10 98.82 99.39 96.79 97.74 94.12 93.65 96.79 98.20 99.01 100.00 94.74 100.00 96.34 96.40 96.23 93.15 93.20 95.45 96.00 98.84 100.00 97.17 88.64 93.22 93.55 95.92 94.37 96.97 97.92 93.85 95.31 94.53 91.67 94.87 92.74 94.34 98.24 98.73 97.39 98.25 92.31 95.42 94.92 97.59 94.06 93.88 97.56 94.23 95.92 98.31 96.04 96.24 94.37 K jcn_only_AA CG11107 chr2R + chr2R_3276687_3276751 chr2R_3276687_3276748 chr2R_3276213_3276686;chr2R_3276752_3277015 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 1.94 0.69 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 1.03 0.62 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 1.33 1.03 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.93 0.00 K intron_retention CG4502,I_chr2L_7196721_7196787,I_chr2L_7196858_7204207 chr2L - chr2L_7196858_7203938 chr2L_7196857_7196858;chr2L_7203938_7203939 chr2L_7196788_7196857;chr2L_7203939_7204239 0.00 NA 0.00 0.00 NA 0.00 0.00 2.94 2.50 NA 0.00 0.00 0.00 0.00 0.00 3.33 0.00 NA 0.00 0.00 NA NA 8.70 NA NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 NA 3.45 NA 3.12 0.00 NA 0.00 6.67 NA NA 0.00 NA NA 0.00 K intron_retention EF_chr2R_8548702_8595112,nemy chr2R - chr2R_8560845_8562495 chr2R_8560844_8560845;chr2R_8562495_8562496 chr2R_8560605_8560844;chr2R_8562496_8562910 32.05 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.33 33.33 NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA N jcn_only_AA CG12207,I_chr3R_10115172_10115963,RE_chr3R_10124392_10124511 chr3R + chr3R_10126741_10126965 chr3R_10126741_10126949 chr3R_10126142_10126740;chr3R_10126966_10127961 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 79.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA bun,I_chr2L_12520177_12536274,I_chr2L_12537393_12537634,RI_chr2L_12540901_12546409 chr2L - chr2L_12537390_12537634 chr2L_12537420_12537634 chr2L_12537635_12537681;chr2L_12537293_12537389 98.84 98.11 100.00 100.00 96.08 100.00 94.29 100.00 100.00 93.10 100.00 98.96 100.00 100.00 98.00 98.08 100.00 100.00 100.00 100.00 94.87 100.00 100.00 100.00 96.88 100.00 100.00 93.10 95.83 93.55 97.44 NA 93.33 98.61 100.00 82.05 95.89 98.63 98.73 98.95 NA 100.00 100.00 97.59 NA 96.15 95.00 100.00 95.08 87.88 94.37 100.00 96.97 96.15 100.00 97.30 100.00 100.00 K intron_retention CG32412 chr3L - chr3L_5894200_5894252 chr3L_5894199_5894200;chr3L_5894252_5894253 chr3L_5894110_5894199;chr3L_5894253_5894321 0.00 0.57 0.00 0.69 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 2.45 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.57 1.01 1.69 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.69 0.72 0.00 1.16 0.56 0.78 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.94 K intron_retention I_chr2L_22707567_22735255,noncoding_4330 chr2L - chr2L_22733848_22733921 chr2L_22733847_22733848;chr2L_22733921_22733922 chr2L_22733621_22733847;chr2L_22733922_22734042 93.33 NA NA 93.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD spi,I_chr2L_19569183_19577185,I_chr2L_19569227_19572142,I_chr2L_19569227_19577173 chr2L - chr2L_19571768_19572503 chr2L_19571768_19572499 chr2L_19571572_19571767;chr2L_19572504_19572512 96.15 96.47 97.14 88.89 NA 100.00 97.22 95.65 95.12 NA NA 89.39 NA 85.71 92.59 97.96 NA 100.00 100.00 93.55 100.00 100.00 97.59 96.72 95.56 95.24 96.83 NA 91.30 92.75 92.00 98.18 98.36 97.73 94.90 94.74 96.88 96.39 95.83 97.92 92.00 93.55 96.00 96.30 95.56 97.46 97.28 98.53 91.55 94.12 95.33 100.00 NA 95.19 97.37 95.65 95.83 97.78 K jcn_only_AD CG8090,I_chr2R_11087088_11087162 chr2R - chr2R_11088433_11088506 chr2R_11088433_11088493 chr2R_11088162_11088432;chr2R_11088507_11088644 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA 100.00 96.55 NA 100.00 NA NA NA 100.00 NA NA NA K cassette trol,I_chrX_2387249_2389980,I_chrX_2391522_2395659 chrX - chrX_2386454_2387020 chrX_2386454_2386687;chrX_2386919_2387020 chrX_2386688_2386918 chrX_2386379_2386453;chrX_2387021_2387248 4.12 4.17 2.56 0.00 2.50 4.44 6.06 6.35 5.22 11.11 0.00 3.49 3.03 5.41 4.17 13.89 0.00 4.35 2.70 0.95 0.00 10.00 3.36 5.17 6.52 9.68 2.86 6.67 0.00 4.08 7.41 0.00 4.60 5.63 2.94 4.26 2.50 2.00 3.95 4.76 0.00 4.44 2.70 7.35 5.56 4.65 5.88 4.03 3.16 0.00 2.38 0.00 2.38 6.67 5.45 4.76 NA 2.90 K alternative_acceptor PP2A-B' chr3R + chr3R_14002771_14004327 chr3R_14002771_14003624 chr3R_14002527_14002770;chr3R_14004328_14004408 90.91 83.33 85.71 80.00 100.00 100.00 100.00 100.00 90.91 80.00 50.00 92.86 NA 100.00 83.33 92.86 100.00 80.00 100.00 100.00 75.00 80.00 91.67 87.50 100.00 75.00 80.00 NA 83.33 100.00 100.00 100.00 87.50 100.00 100.00 100.00 87.50 80.00 80.00 92.31 83.33 88.89 100.00 71.43 88.89 91.67 88.89 88.89 92.31 91.67 83.33 100.00 100.00 83.33 75.00 88.89 100.00 94.44 K cassette HLH106,RI_chr3L_19787260_19787323 chr3L + chr3L_19787260_19788001 chr3L_19787260_19787773;chr3L_19787800_19788001 chr3L_19787774_19787799 chr3L_19787254_19787259;chr3L_19788002_19789492 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG5482,I_chr2R_14519136_14519239 chr2R - chr2R_14519136_14519367;chr2R_14519136_14519254 chr2R_14519136_14519239 chr2R_14519036_14519135;chr2R_14519368_14519403 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Dp1 chr2R + chr2R_14299562_14300509 chr2R_14299562_14300506 chr2R_14299526_14299561;chr2R_14300510_14300582 83.76 NA NA 75.76 NA NA NA 81.82 90.00 NA NA 90.00 NA NA NA 65.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA 95.83 NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA K intron_retention CG9119,I_chr3L_1204287_1204586 chr3L - chr3L_1204287_1204554 chr3L_1204286_1204287;chr3L_1204554_1204555 chr3L_1204187_1204286;chr3L_1204555_1204884 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention LanB1,RI_chr2L_7820401_7820448,RI_chr2L_7820405_7820461 chr2L + chr2L_7820401_7820448 chr2L_7820400_7820401;chr2L_7820448_7820449 chr2L_7820305_7820400;chr2L_7820449_7820548 14.39 NA NA 15.00 NA NA NA 13.64 10.53 NA NA NA NA NA NA 15.79 NA NA NA 13.79 NA NA 27.27 NA NA 72.73 NA NA 84.62 NA NA NA NA NA NA NA NA NA NA NA 36.84 26.32 NA NA NA 6.25 NA NA 20.00 13.33 NA NA NA NA 13.33 NA 6.45 8.33 K intron_retention CG30020,I_chr2R_6778098_6778140 chr2R + chr2R_6778404_6778491 chr2R_6778403_6778404;chr2R_6778491_6778492 chr2R_6778369_6778403;chr2R_6778492_6778764 7.87 NA NA 17.39 0.00 NA NA 15.00 15.15 NA NA 10.53 NA NA 14.29 27.78 NA NA NA 19.23 NA NA 7.41 5.26 22.22 NA 13.33 23.08 NA NA NA NA NA 7.14 0.00 NA 0.00 0.00 10.53 17.65 NA 8.33 NA 5.88 NA NA NA NA 5.88 0.00 4.76 0.00 NA NA NA 0.00 NA NA K intron_retention mRpL52,REI_chr2R_3561489_3561568,I_chr2R_3574133_3574191 chr2R - chr2R_3561698_3561759 chr2R_3561697_3561698;chr2R_3561759_3561760 chr2R_3561569_3561697;chr2R_3561760_3561880 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG4165,I_chrX_5317784_5317881,I_chrX_5321743_5321838 chrX + chrX_5316313_5316612;chrX_5316300_5316612;chrX_5315965_5316612 chrX_5316160_5316612 chrX_5316613_5317050;chrX_5315939_5315964 66.67 77.78 77.78 73.33 50.00 75.00 60.00 64.29 68.75 50.00 66.67 77.78 80.00 57.14 80.00 80.00 80.00 66.67 90.91 68.42 66.67 63.64 76.92 57.14 60.00 55.56 66.67 85.71 50.00 66.67 85.71 NA 30.00 66.67 66.67 60.00 63.64 75.00 50.00 63.64 50.00 82.35 100.00 50.00 25.00 50.00 83.33 37.50 81.25 80.00 61.54 60.00 66.67 NA 66.67 60.00 50.00 50.00 K cassette tomosyn,I_chrX_12531219_12531470,I_chrX_12534873_12541731,noncoding_23357,I_chrX_12548772_12549203 chrX + chrX_12534873_12545142 chrX_12534873_12542569;chrX_12543216_12545142 chrX_12542570_12543215 chrX_12534773_12534872;chrX_12545143_12545259 87.50 88.89 90.00 100.00 83.33 83.33 63.64 50.00 77.78 100.00 85.71 100.00 80.00 80.00 80.00 88.89 NA 83.33 63.64 90.91 100.00 76.92 92.31 80.00 100.00 66.67 87.50 NA 90.00 88.89 60.00 83.33 92.31 92.31 85.71 88.89 92.59 91.67 94.12 92.31 80.00 93.75 75.00 78.57 87.50 88.89 100.00 92.31 73.33 71.43 92.31 80.00 90.00 80.00 85.71 85.71 90.91 100.00 K intron_retention CG5091,I_chr2L_10381111_10381376 chr2L + chr2L_10381111_10381162 chr2L_10381110_10381111;chr2L_10381162_10381163 chr2L_10381011_10381110;chr2L_10381163_10381322 0.00 0.00 1.43 1.83 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 4.84 0.00 0.00 0.00 4.76 0.00 0.00 4.65 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 K intron_retention CG30456 chr2R + chr2R_12993876_12993936 chr2R_12993875_12993876;chr2R_12993936_12993937 chr2R_12993771_12993875;chr2R_12993937_12994071 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.08 0.00 0.00 0.00 0.00 0.00 0.00 2.60 5.00 2.60 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32017,F_chr4_1159883_1161112,RI_chr4_1161994_1164252 chr4 - chr4_1160627_1161112 chr4_1160626_1160627;chr4_1161112_1161113 chr4_1160367_1160626;chr4_1161113_1161212 21.52 14.29 26.32 NA NA 20.00 18.92 15.00 22.22 NA NA 20.69 NA 27.27 19.05 25.81 30.77 NA 30.00 25.00 NA NA NA NA NA 29.41 NA NA NA NA 15.15 NA NA 28.12 NA 16.67 NA NA NA NA NA 16.22 22.22 26.67 NA NA NA NA 20.83 NA 22.22 6.67 NA NA 16.67 NA NA NA K intron_retention Shawn_Tyler,RpS10b chrX + chrX_19492111_19492181 chrX_19492110_19492111;chrX_19492181_19492182 chrX_19492047_19492110;chrX_19492182_19492238 69.23 NA NA 33.33 NA NA 92.65 60.00 87.50 NA 87.50 69.23 NA NA NA 69.23 NA NA NA 45.45 NA 78.95 NA 75.00 100.00 69.23 94.12 91.67 98.18 NA NA NA NA 63.64 NA NA NA NA NA 70.00 63.64 64.71 NA NA NA 75.00 NA 46.15 63.64 50.00 NA 75.00 60.00 NA 60.00 NA 65.00 56.25 K alternative_acceptor CG12753,Pak3 chr3R - chr3R_12264366_12264433 chr3R_12264373_12264433 chr3R_12264434_12264895;chr3R_12263787_12264365 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 97.22 96.55 100.00 100.00 100.00 100.00 100.00 100.00 97.30 98.25 100.00 96.67 100.00 100.00 95.00 100.00 100.00 100.00 100.00 K intron_retention opa1-like,I_chr2R_10119470_10120234,I_chr2R_10121848_10121900,I_chr2R_10122128_10122197,I_chr2R_10122334_10122393 chr2R - chr2R_10120635_10120692 chr2R_10120634_10120635;chr2R_10120692_10120693 chr2R_10120470_10120634;chr2R_10120693_10121066 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.92 1.92 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_120081_120199 chr2L_120080_120081;chr2L_120199_120200 chr2L_119981_120080;chr2L_120200_120265 87.50 88.24 89.47 87.50 90.91 87.50 87.50 92.31 83.33 NA 100.00 90.48 95.00 89.47 73.91 83.02 95.24 92.31 89.66 88.46 92.31 83.33 75.00 93.75 82.35 75.00 80.00 NA NA 60.00 78.57 NA 92.86 86.05 88.24 66.67 72.73 75.00 90.00 65.38 80.00 90.91 94.74 76.47 NA 81.82 80.00 76.47 90.91 94.12 77.78 89.47 NA NA 94.12 80.00 87.50 70.00 K alternative_donor CG5850,I_chr2L_9963013_9963451 chr2L - chr2L_9961618_9961794 chr2L_9961618_9961728 chr2L_9961359_9961617;chr2L_9961795_9962059 100.00 100.00 100.00 98.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.08 99.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.26 100.00 100.00 100.00 100.00 100.00 98.86 100.00 100.00 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG4065,RI_chr2R_20024231_20024292,I_chr2R_20024873_20024921 chr2R - chr2R_20025292_20025383 chr2R_20025295_20025383 chr2R_20025384_20025494;chr2R_20024922_20025291 66.67 53.33 NA NA NA NA NA NA 61.54 NA NA 50.00 NA NA NA NA NA NA NA 73.68 NA 76.47 66.67 75.00 77.78 NA 66.67 66.67 81.82 80.00 NA NA NA NA 60.00 66.67 66.67 58.82 66.67 55.56 NA 73.33 NA 41.67 66.67 56.25 57.14 NA 58.33 73.33 63.64 63.64 64.29 66.67 NA 68.75 66.67 NA K alternative_acceptor Fkbp13,I_chr2R_17382832_17383162,RI_chr2R_17382832_17384137,I_chr2R_17382852_17384568 chr2R - chr2R_17382832_17384568 chr2R_17382852_17384568 chr2R_17384569_17384668;chr2R_17382752_17382831 0.00 0.00 0.00 0.18 0.43 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.23 0.00 0.20 0.00 0.56 0.39 0.38 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.37 0.35 0.00 0.00 0.62 0.30 0.00 0.47 0.47 0.12 0.34 0.53 0.48 0.30 0.00 0.32 0.00 0.19 0.00 0.00 0.14 0.00 0.19 0.21 0.16 0.00 N jcn_only_AA CG13900,I_chr3L_830745_830907 chr3L - chr3L_830745_830907;chr3L_830715_830907;chr3L_830729_830907 chr3L_830814_830907 chr3L_830908_831007;chr3L_830702_830714 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG17082,I_chr2R_632143_635290,R_chr2R_642176_644740,I_chr2R_644094_644145,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_632192_632274;chr2R_631984_632274;chr2R_632085_632274;chr2R_632143_632274 chr2R_632196_632274 chr2R_632275_632399;chr2R_631970_631983 12.50 NA NA 0.00 NA NA 12.50 0.00 25.00 NA NA 0.00 NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA K alternative_donor vlc chr2R + chr2R_1589894_1590371;chr2R_1589799_1590371;chr2R_1589805_1590371;chr2R_1590318_1590371;chr2R_1589807_1590371;chr2R_1590294_1590371;chr2R_1589722_1590371;chr2R_1589693_1590371 chr2R_1589953_1590371 chr2R_1590372_1590451;chr2R_1589612_1589692 4.17 2.94 2.56 4.55 8.70 8.00 7.27 1.52 6.33 0.00 3.85 4.00 2.44 2.33 2.86 4.29 6.45 27.50 4.17 4.41 3.70 0.00 4.55 2.86 4.55 5.26 0.00 7.69 7.14 4.17 2.17 0.00 4.35 5.06 0.00 8.33 3.70 3.57 4.00 7.89 7.69 4.05 2.63 6.67 8.33 4.76 4.55 10.00 3.66 0.00 4.17 7.41 5.88 0.00 3.70 4.35 0.00 5.26 K jcn_only_AA CG3683 chr2R + chr2R_20551980_20552038 chr2R_20551980_20552030 chr2R_20551911_20551979;chr2R_20552039_20552202 77.91 NA NA 95.45 NA NA NA 56.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 85.00 NA NA NA NA NA NA NA 48.65 NA NA NA NA NA NA NA NA 70.83 NA NA NA NA NA NA NA NA 90.00 N cassette Sec22,I_chrX_700593_700676,RI_chrX_700599_700665 chrX + chrX_700593_701001 chrX_700593_700665;chrX_700776_701001 chrX_700666_700775 chrX_700499_700592;chrX_701002_701303 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Pk17E,I_chrX_18683130_18684538,I_chrX_18685493_18699326 chrX + chrX_18683123_18684544 chrX_18683123_18684538 chrX_18683030_18683122;chrX_18684545_18684638 78.57 90.00 54.55 76.19 78.57 66.67 81.25 68.18 82.05 80.00 75.00 82.61 71.43 90.00 93.75 84.62 81.82 88.89 92.31 78.57 60.00 71.88 80.00 70.83 75.00 77.78 73.91 84.62 80.95 80.95 78.57 72.73 72.00 76.92 63.16 76.47 80.56 95.00 77.42 78.38 100.00 75.68 100.00 83.33 76.47 64.00 69.23 82.35 75.86 90.00 86.96 83.33 69.23 75.00 90.91 62.50 90.00 78.26 K alternative_acceptor Dlic chrX + chrX_11048699_11049081 chrX_11048699_11049066 chrX_11048472_11048698;chrX_11049082_11049261 100.00 96.55 100.00 100.00 100.00 96.43 95.56 100.00 98.84 100.00 100.00 98.53 100.00 96.77 100.00 100.00 96.00 100.00 100.00 98.51 100.00 100.00 97.83 100.00 96.55 95.65 100.00 100.00 100.00 97.92 97.37 100.00 100.00 100.00 100.00 100.00 98.11 97.06 100.00 99.03 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 98.36 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 K cassette Bruce chr3R - chr3R_6146553_6147186 chr3R_6146553_6146876;chr3R_6146949_6147186 chr3R_6146877_6146948 chr3R_6145768_6146552;chr3R_6147187_6147304 30.43 30.00 38.10 11.76 30.00 29.63 9.52 28.57 28.89 30.77 30.77 21.33 36.36 28.26 22.92 49.32 34.88 50.00 24.56 22.97 25.00 69.64 28.89 31.25 32.00 28.57 48.15 50.00 30.43 37.84 27.91 60.00 35.00 32.05 30.43 21.88 34.29 43.75 30.77 18.18 NA 27.50 19.15 42.11 NA 27.27 30.77 26.67 22.86 55.56 30.95 32.00 NA NA 19.15 NA NA NA K intron_retention CG30152 chr2R + chr2R_16559184_16559250 chr2R_16559183_16559184;chr2R_16559250_16559251 chr2R_16558547_16559183;chr2R_16559251_16559363 1.52 1.23 1.65 2.44 0.00 0.00 1.92 1.82 2.05 2.25 0.00 0.00 0.00 2.44 0.77 0.70 0.00 0.00 1.12 1.77 0.00 0.49 5.22 1.57 0.00 0.00 1.79 2.60 1.55 0.00 1.64 3.47 2.26 0.00 2.22 2.60 1.43 0.00 3.19 1.52 1.43 1.20 2.60 0.89 2.49 1.38 2.46 2.30 2.58 1.89 1.89 0.00 3.85 0.00 0.00 0.00 1.87 1.19 K jcn_only_AD CG15202,CG15201,I_chrX_11038283_11038356 chrX + chrX_11037224_11037291 chrX_11037228_11037291 chrX_11037292_11037360;chrX_11037165_11037223 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA 100.00 100.00 NA NA NA NA NA NA 100.00 NA K cassette lilli chr2L + chr2L_2890917_2946708;chr2L_2888599_2946708 chr2L_2890917_2945608,chr2L_2888599_2945608;chr2L_2945793_2946708 chr2L_2945609_2945792 chr2L_2888557_2888598;chr2L_2946709_2947435 24.00 26.32 19.05 27.78 7.14 20.00 34.62 31.58 26.42 22.22 21.05 28.57 20.00 16.67 25.00 20.59 28.57 31.58 19.05 16.33 22.22 44.83 15.00 14.81 11.76 42.86 13.33 44.44 66.67 23.08 22.73 NA 55.00 31.25 20.00 32.14 25.00 25.00 20.00 18.18 36.36 29.73 30.77 24.00 NA 25.00 26.67 42.11 22.86 11.11 14.71 19.05 20.00 25.00 26.32 18.18 16.67 36.84 K alternative_last_exon dlg1,I_chrX_11281967_11282030 chrX + chrX_11281967_11282048;chrX_11281967_11289272 chrX_11281967_11282024,chrX_11281967_11282018 chrX_11289273_11289824 chrX_11282025_11283324 chrX_11281957_11281966 50.00 50.00 50.00 66.67 33.33 16.67 50.00 80.00 50.00 33.33 33.33 60.00 66.67 40.00 66.67 75.00 25.00 40.00 60.00 50.00 50.00 50.00 50.00 50.00 50.00 40.00 50.00 50.00 33.33 50.00 33.33 50.00 66.67 60.00 75.00 50.00 28.57 40.00 50.00 75.00 66.67 50.00 50.00 50.00 50.00 75.00 50.00 75.00 62.50 71.43 60.00 40.00 28.57 40.00 40.00 50.00 50.00 80.00 K intron_retention l(1)G0222,FI_chrX_17466478_17466552,I_chrX_17473084_17473137 chrX - chrX_17466493_17466552 chrX_17466492_17466493;chrX_17466552_17466553 chrX_17465887_17466492;chrX_17466553_17466652 0.00 0.00 0.00 0.00 0.00 0.00 2.56 1.23 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 5.41 0.00 0.00 3.64 0.00 0.00 0.00 1.54 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Bruce chr3R - chr3R_6148103_6148168 chr3R_6148106_6148168 chr3R_6148169_6148437;chr3R_6147930_6148102 88.24 76.19 85.19 90.24 78.26 85.00 85.71 83.02 90.48 84.62 96.00 90.74 77.42 86.67 96.00 85.71 93.33 89.29 90.00 90.00 91.67 85.37 87.23 90.00 95.24 86.67 95.24 93.33 85.71 86.67 80.56 NA 80.00 84.62 94.74 100.00 81.25 90.00 87.88 96.67 NA 88.24 83.33 87.10 NA 88.89 90.00 86.36 89.58 87.50 88.24 94.44 85.71 NA 92.50 90.00 NA NA K intron_retention CG7115 chr2L + chr2L_7824352_7824427 chr2L_7824351_7824352;chr2L_7824427_7824428 chr2L_7824088_7824351;chr2L_7824428_7824480 6.67 NA NA 13.64 NA NA NA 0.00 19.05 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 12.50 NA 14.29 0.00 8.70 36.36 36.36 16.67 7.14 25.00 NA NA NA NA 20.00 NA NA 0.00 NA 0.00 0.00 14.29 4.17 NA 0.00 NA 0.00 NA 6.25 27.78 NA 0.00 NA NA NA NA 0.00 6.67 10.00 K alternative_last_exon CG4365 chr3L + chr3L_20791819_20792242 chr3L_20791819_20791876,chr3L_20791819_20791867 chr3L_20792243_20793250 chr3L_20791877_20792088 chr3L_20791802_20791818 22.45 19.44 27.27 17.50 22.73 19.35 22.58 19.57 19.72 21.74 18.52 13.64 17.65 12.50 29.27 29.63 14.29 23.33 15.62 17.86 30.00 15.38 32.43 25.53 37.93 41.67 45.83 30.56 50.00 34.48 32.43 21.74 15.38 20.41 24.24 30.00 19.23 35.48 20.63 18.33 18.92 17.19 26.67 22.58 29.73 18.03 24.64 10.53 23.21 20.41 28.57 25.93 22.45 31.37 21.62 25.00 18.67 15.00 K intron_retention MRP,F_chr2L_12727117_12736035 chr2L + chr2L_12725797_12725858 chr2L_12725796_12725797;chr2L_12725858_12725859 chr2L_12725712_12725796;chr2L_12725859_12726678 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention LanB1,RI_chr2L_7820401_7820448,RI_chr2L_7820405_7820461 chr2L + chr2L_7820401_7820461 chr2L_7820400_7820401;chr2L_7820461_7820462 chr2L_7820305_7820400;chr2L_7820462_7820548 0.37 0.29 0.40 0.46 0.41 0.00 0.44 0.59 0.35 0.00 0.36 0.40 0.27 0.51 0.29 0.49 0.39 0.00 0.29 0.44 0.20 0.32 0.52 0.00 0.61 3.49 0.78 0.34 3.68 0.00 0.42 0.00 0.39 0.21 0.00 0.00 0.00 0.26 0.17 0.43 1.44 0.50 0.20 0.55 0.44 0.40 0.43 0.00 0.49 0.52 0.37 0.49 0.11 0.00 0.29 0.54 0.13 0.34 K cassette CG9044 chr2L + chr2L_5952628_5953415 chr2L_5952628_5952988;chr2L_5953058_5953415 chr2L_5952989_5953057 chr2L_5952445_5952627;chr2L_5953416_5954477 58.82 61.11 51.85 50.00 62.50 59.09 25.71 77.27 62.50 66.67 80.00 44.44 86.96 54.55 48.48 59.38 59.26 46.15 58.82 62.50 55.56 58.33 70.00 50.00 61.11 34.62 58.33 75.00 36.36 72.73 58.62 65.00 56.00 67.57 50.00 55.00 70.83 68.75 73.91 61.11 53.33 56.00 57.14 78.95 44.44 53.85 42.86 73.91 54.05 73.68 68.00 45.00 53.33 80.00 56.25 65.22 57.14 70.00 K intron_retention Msp-300,I_chr2L_5197634_5197866 chr2L + chr2L_5203743_5204462 chr2L_5203742_5203743;chr2L_5204462_5204463 chr2L_5203116_5203742;chr2L_5204463_5204592 9.26 11.63 15.38 13.33 8.33 15.38 8.93 11.63 13.51 0.00 1.54 9.90 11.11 11.43 11.32 9.09 13.33 7.81 14.63 18.75 6.67 9.80 4.76 4.69 0.00 13.79 7.55 12.50 6.06 8.57 9.09 16.00 6.82 13.89 8.33 7.27 2.50 5.88 4.76 9.21 5.88 14.16 12.50 6.82 19.23 12.28 2.50 15.00 9.63 12.50 7.35 7.41 12.07 7.89 17.31 9.26 4.76 14.00 K alternative_donor CG10737 chr2R + chr2R_15062754_15063752;chr2R_15062814_15063752 chr2R_15062592_15063752 chr2R_15063753_15063852;chr2R_15062387_15062591 0.00 0.00 0.00 0.79 1.35 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 0.52 0.00 0.80 0.81 0.00 0.00 0.00 0.00 1.85 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_243585_244182;chr4_243657_244182;chr4_243639_244182 chr4_243673_244182 chr4_244183_244282;chr4_243557_243584 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 NA 0.00 1.32 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 K intron_retention CG4968 chr2L + chr2L_10307494_10307557 chr2L_10307493_10307494;chr2L_10307557_10307558 chr2L_10307194_10307493;chr2L_10307558_10308108 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 1.59 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA stai,I_chr2L_6100550_6101701,I_chr2L_6110225_6121773 chr2L + chr2L_6100550_6101701 chr2L_6100550_6101693 chr2L_6100450_6100549;chr2L_6101702_6101798 100.00 100.00 100.00 99.62 89.66 100.00 100.00 100.00 99.26 NA 95.74 100.00 100.00 97.94 100.00 100.00 100.00 100.00 100.00 99.15 100.00 100.00 100.00 100.00 100.00 99.09 100.00 95.24 100.00 100.00 100.00 100.00 100.00 99.47 100.00 100.00 100.00 NA 98.77 100.00 97.62 99.32 100.00 100.00 100.00 100.00 99.21 100.00 98.29 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 N jcn_only_AA CG31751,RI_chr2L_18677311_18677391,RI_chr2L_18677473_18677932 chr2L + chr2L_18677473_18677932;chr2L_18677473_18678838 chr2L_18677473_18682264 chr2L_18677392_18677472 0.00 NA NA 38.10 NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K alternative_donor unc-13,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_924098_924986 chr4_924098_924258 chr4_923998_924097;chr4_924987_925545 42.86 50.00 28.57 35.71 40.00 22.22 63.16 42.86 56.25 100.00 NA 33.33 33.33 36.36 25.00 53.33 30.00 28.57 50.00 33.33 NA 100.00 42.86 66.67 80.00 18.18 80.00 100.00 100.00 100.00 40.00 NA 80.00 27.78 75.00 75.00 25.00 NA NA 50.00 NA 35.71 22.22 100.00 NA NA NA 42.86 26.32 NA 75.00 66.67 NA NA 14.29 NA NA NA N cassette puc,CG7878,I_chr3R_3952846_3953762 chr3R + chr3R_3931818_3936798 chr3R_3931818_3933961;chr3R_3934101_3936798 chr3R_3933962_3934100 chr3R_3931090_3931817;chr3R_3936799_3937023 100.00 100.00 100.00 70.67 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 92.86 100.00 100.00 100.00 93.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention l(3)02640,I_chr3L_1337063_1337270 chr3L + chr3L_1335289_1335943 chr3L_1335288_1335289;chr3L_1335943_1335944 chr3L_1335041_1335288;chr3L_1335944_1336016 1.03 0.86 0.58 1.37 0.00 0.00 1.22 0.00 0.00 0.00 1.87 1.71 0.00 0.00 0.00 0.56 0.00 0.00 2.05 0.74 0.00 1.53 1.38 0.00 1.01 0.00 2.03 4.15 3.06 1.87 2.23 3.41 2.01 0.82 2.11 0.00 1.47 1.22 0.57 0.00 2.74 0.85 0.00 2.13 1.90 2.99 0.00 2.42 1.52 0.64 0.00 1.48 1.56 6.58 0.00 1.03 2.08 1.40 N alternative_acceptor CG1416,I_chr2L_21758100_21758179,I_chr2L_21758143_21758183,I_chr2L_21758143_21758209 chr2L + chr2L_21758143_21758201;chr2L_21758143_21758205;chr2L_21758143_21758183 chr2L_21758143_21758209 chr2L_21758116_21758142;chr2L_21758210_21758279 0.58 0.83 0.71 0.58 1.30 0.00 0.58 0.00 0.40 1.20 1.09 0.00 0.93 0.60 0.49 0.00 1.19 0.76 0.70 0.32 0.97 0.00 0.57 0.00 0.00 0.67 0.00 0.62 0.70 0.76 0.51 0.78 0.00 0.46 0.66 0.00 0.94 1.04 0.73 1.03 0.00 0.39 0.00 0.00 1.63 0.93 0.00 0.00 0.30 1.23 0.00 0.87 0.00 0.67 0.58 0.53 0.43 0.41 K intron_retention Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19557901_19559498 chr2R_19557900_19557901;chr2R_19559498_19559499 chr2R_19557881_19557900;chr2R_19559499_19559611 34.84 NA NA NA NA NA NA NA 33.33 NA NA 61.54 NA NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA 25.00 NA NA 54.55 36.36 NA NA NA NA 42.86 NA 40.00 NA NA NA 12.50 NA NA 30.77 NA NA NA NA NA NA NA K intron_retention spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20346512_20346577 chr2L_20346511_20346512;chr2L_20346577_20346578 chr2L_20346451_20346511;chr2L_20346578_20346891 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.91 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Mnt chrX + chrX_3587966_3592372;chrX_3587966_3592774;chrX_3587966_3592150 chrX_3587966_3592777 chrX_3587244_3587965;chrX_3592778_3593060 5.57 0.00 8.82 6.25 13.33 21.43 15.15 3.70 8.57 7.89 6.25 0.00 3.12 11.54 6.98 0.00 0.00 NA 0.00 3.92 8.33 5.13 5.88 0.00 3.70 0.00 0.00 NA 3.33 5.08 10.34 NA 2.94 6.25 7.14 5.26 9.52 8.00 12.50 6.00 NA 2.78 NA 4.65 NA 0.00 NA 1.52 10.34 NA 4.35 NA NA NA 6.98 NA NA 10.00 N jcn_only_AD lig3 chr3R - chr3R_8226161_8226248 chr3R_8226161_8226239 chr3R_8224994_8226160;chr3R_8226249_8227041 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.37 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 13.16 0.00 20.69 19.05 0.00 0.00 NA 18.97 0.00 18.42 22.45 36.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 15.25 0.00 33.33 0.00 NA 0.00 0.00 0.00 0.00 19.64 25.53 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG1764 chrX - chrX_13190045_13190545 chrX_13190044_13190045;chrX_13190545_13190546 chrX_13189722_13190044;chrX_13190546_13190745 1.11 1.38 1.32 0.88 0.00 0.83 0.00 1.56 0.45 0.00 2.35 1.43 0.00 0.00 0.65 0.00 0.00 1.68 0.00 0.60 1.54 2.48 1.76 1.27 1.83 0.00 3.31 1.27 7.19 0.66 0.00 0.00 1.14 0.00 0.72 1.33 0.46 0.72 2.30 1.24 2.11 0.87 0.00 0.00 0.47 0.95 0.56 1.32 2.62 1.52 1.18 3.61 1.16 1.11 1.20 0.00 1.85 1.25 K jcn_only_AD CG8788,I_chr2R_5026774_5026825,RI_chr2R_5026774_5026866,RI_chr2R_5026774_5028942,RI_chr2R_5033951_5034150,I_chr2R_5036518_5036570 chr2R + chr2R_5026774_5027484 chr2R_5026778_5027484 chr2R_5027485_5027803;chr2R_5026674_5026773 4.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.55 NA NA NA NA NA NA NA NA NA NA K intron_retention nod,I_chrX_11475074_11475402 chrX + chrX_11478530_11478592 chrX_11478529_11478530;chrX_11478592_11478593 chrX_11478339_11478529;chrX_11478593_11479303 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 4.76 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 13.64 0.00 0.00 NA NA NA NA 0.00 NA NA K jcn_only_AD CG32803,I_chrX_1795047_1795115,RI_chrX_1795648_1795745,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1795047_1795115 chrX_1795047_1795097 chrX_1794947_1795046;chrX_1795116_1795215 98.33 100.00 100.00 100.00 100.00 100.00 94.67 96.46 97.12 100.00 95.45 97.44 100.00 100.00 97.26 100.00 100.00 98.48 96.55 100.00 98.33 93.02 99.01 98.55 97.62 95.71 97.22 100.00 86.96 96.88 100.00 100.00 100.00 99.05 97.83 97.96 95.18 100.00 98.84 96.15 95.24 98.33 90.70 98.77 100.00 95.58 95.37 96.88 97.12 98.70 98.51 97.37 94.34 97.92 98.73 98.88 100.00 97.44 K intron_retention drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9389753 chr2R_9389596_9389597;chr2R_9389753_9389754 chr2R_9389497_9389596;chr2R_9389754_9389851 97.92 95.24 100.00 97.92 100.00 100.00 100.00 100.00 98.41 100.00 100.00 95.92 100.00 100.00 96.77 98.00 90.91 95.45 97.62 90.91 95.65 100.00 94.44 97.37 95.24 96.30 96.88 100.00 94.44 100.00 100.00 100.00 98.00 98.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 97.50 92.31 96.55 88.57 95.24 98.59 96.43 96.88 96.00 95.24 100.00 97.30 95.00 96.88 96.88 N jcn_only_AA Droj2,RI_chr3R_9207981_9208471,RI_chr3R_9208529_9209185 chr3R + chr3R_9207981_9209185;chr3R_9207981_9209956 chr3R_9207981_9208471 chr3R_9207926_9207980;chr3R_9209957_9210301 0.28 0.70 0.62 0.00 0.00 0.28 0.49 0.15 0.43 0.28 0.60 0.00 0.26 0.25 0.78 0.26 0.33 2.92 0.20 0.46 0.00 0.40 0.13 0.22 0.61 0.00 0.36 0.00 1.12 0.00 0.34 0.14 0.72 0.15 0.20 0.00 0.62 0.24 0.00 0.23 0.13 0.15 0.56 0.36 0.74 0.31 0.43 0.47 0.43 0.00 0.43 0.29 0.58 0.46 0.37 0.28 0.26 0.00 K mutually_exclusive I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499338_1500244,chr3L_1500389_1501798;chr3L_1499338_1501350,chr3L_1501398_1501798 chr3L_1499338_1499771,chr3L_1499880_1501798 chr3L_1500245_1500388;chr3L_1501351_1501397 chr3L_1499772_1499879 chr3L_1499043_1499337;chr3L_1501799_1501892 11.11 NA 25.00 30.00 NA NA NA 18.18 10.00 0.00 NA 15.38 NA NA 0.00 20.00 NA NA 12.50 11.11 NA 0.00 20.00 0.00 20.00 28.57 0.00 27.27 NA 0.00 0.00 NA 16.67 11.11 0.00 0.00 NA 20.00 28.57 22.22 0.00 9.09 NA 0.00 0.00 0.00 0.00 12.50 11.11 25.00 25.00 0.00 NA 0.00 14.29 16.67 25.00 0.00 K intron_retention CG34394,I_chr2L_3365674_3365965 chr2L - chr2L_3367720_3367903 chr2L_3367719_3367720;chr2L_3367903_3367904 chr2L_3367245_3367719;chr2L_3367904_3368056 5.26 5.88 4.29 5.77 5.26 10.00 9.52 10.77 2.33 2.33 5.71 5.95 6.25 10.81 1.69 5.45 0.00 4.65 11.36 6.98 0.00 7.89 3.57 4.00 8.57 4.76 11.63 9.26 16.28 4.00 5.00 9.09 7.81 0.00 5.26 2.86 6.90 2.27 5.08 7.25 9.09 4.85 0.00 1.82 7.41 5.88 2.94 0.00 7.06 3.85 8.89 3.33 0.00 0.00 12.24 0.00 8.00 4.88 K intron_retention tef,CG8950 chr2R - chr2R_12943804_12943867 chr2R_12943803_12943804;chr2R_12943867_12943868 chr2R_12942740_12943803;chr2R_12943868_12944362 0.00 NA 0.00 0.00 NA NA 0.00 10.53 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD None chrU + chrU_1182323_1183262;chrU_1179335_1183262 chrU_1178980_1183262 1.82 1.44 0.53 2.63 0.97 4.52 2.43 0.00 1.44 1.33 1.32 1.45 1.40 2.84 2.09 2.16 2.81 1.82 2.75 3.04 1.06 0.92 3.08 4.58 0.00 2.24 0.00 0.00 0.82 0.99 0.85 3.39 11.48 2.97 6.48 1.75 1.18 2.74 1.03 0.67 1.84 2.17 0.00 0.51 1.44 0.00 0.62 0.78 2.30 6.06 2.74 6.00 2.68 3.48 0.82 3.31 3.77 2.54 K intron_retention CG32638,I_chrX_13017877_13022283 chrX - chrX_13017721_13017806 chrX_13017720_13017721;chrX_13017806_13017807 chrX_13017225_13017720;chrX_13017807_13017876 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor MSBP,I_chrX_15783766_15784027,RI_chrX_15783766_15784064,I_chrX_15783766_15785978 chrX - chrX_15783766_15784064;chrX_15783766_15784027 chrX_15783766_15783941 chrX_15783666_15783765;chrX_15784065_15784071 97.50 100.00 100.00 98.89 95.65 97.92 97.95 96.67 96.57 96.97 98.04 98.35 98.08 98.44 94.20 94.35 95.89 92.59 95.89 95.54 98.46 93.75 97.75 97.83 95.12 98.25 97.18 100.00 98.21 96.61 100.00 94.74 88.46 99.15 100.00 100.00 96.61 97.06 97.78 98.31 97.56 93.16 91.38 100.00 97.37 97.47 97.18 96.15 96.00 97.50 97.22 97.67 97.67 100.00 96.10 92.59 100.00 100.00 K intron_retention UGP,CRE_chr3L_9346329_9346828,I_chr3L_9346335_9346837 chr3L - chr3L_9346329_9346837 chr3L_9346328_9346329;chr3L_9346837_9346838 chr3L_9346235_9346328;chr3L_9346838_9346928 0.00 5.56 0.00 2.56 0.00 0.00 4.17 6.12 2.82 0.00 0.00 3.39 0.00 0.00 0.00 10.00 0.00 0.00 6.25 0.00 0.00 11.11 2.86 0.00 0.00 0.00 0.00 0.00 0.00 4.76 8.00 NA 0.00 4.44 NA 9.09 0.00 0.00 0.00 0.00 NA 0.00 0.00 11.76 0.00 4.35 5.88 0.00 0.00 0.00 10.71 0.00 NA NA 0.00 0.00 9.09 6.67 K cassette Lasp,I_chr3L_16671761_16673911,I_chr3L_16671780_16671907,RI_chr3L_16674471_16704042 chr3L - chr3L_16671761_16673911 chr3L_16671761_16671907;chr3L_16672574_16673911 chr3L_16671908_16672573 chr3L_16671680_16671760;chr3L_16673912_16674011 99.35 99.59 99.06 99.62 99.44 98.97 99.63 98.84 99.07 100.00 99.44 99.72 100.00 99.33 99.08 99.45 99.35 97.80 99.36 99.38 100.00 91.50 99.35 99.42 99.62 98.11 98.84 100.00 99.69 97.70 99.42 99.31 98.11 99.66 98.17 99.58 99.25 99.42 98.70 98.38 97.06 99.75 99.26 98.31 97.14 99.52 99.17 97.88 99.71 99.59 98.91 100.00 99.55 100.00 100.00 98.48 99.13 96.94 K jcn_only_AA pyd,I_chr3R_4689473_4690507,I_chr3R_4749124_4756437 chr3R - chr3R_4668562_4690507 chr3R_4689473_4690507 chr3R_4690508_4690607;chr3R_4668392_4668561 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 5.00 0.00 0.00 NA 0.00 0.00 0.00 3.45 4.17 0.00 NA 0.00 0.00 0.00 NA 3.85 0.00 2.33 3.03 0.00 2.86 1.82 0.00 NA 0.00 NA 2.08 NA 0.00 0.00 3.85 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA K jcn_only_AA prel chr2R + chr2R_5311772_5311836 chr2R_5311772_5311833 chr2R_5311616_5311771;chr2R_5311837_5311930 51.18 53.85 52.67 55.78 41.82 50.00 48.48 50.87 47.98 52.63 48.53 50.00 55.42 46.30 50.36 56.42 55.56 48.18 50.82 51.82 48.45 55.29 51.59 50.00 48.08 53.68 49.46 48.96 51.22 50.00 53.52 51.81 49.61 45.16 58.65 56.32 53.33 51.85 51.56 53.33 49.55 54.71 53.26 50.38 50.29 47.50 50.36 50.80 51.89 52.00 51.90 47.30 57.41 51.69 48.30 54.33 51.18 50.35 N intron_retention Xrp1,I_chr3R_14741648_14750799,I_chr3R_14750298_14750799 chr3R + chr3R_14744064_14745144 chr3R_14744063_14744064;chr3R_14745144_14745145 chr3R_14744002_14744063;chr3R_14745145_14745234 100.00 80.00 100.00 81.97 77.42 100.00 91.07 79.20 86.01 100.00 100.00 89.74 84.75 82.69 100.00 88.24 100.00 100.00 100.00 89.23 100.00 75.32 100.00 100.00 100.00 77.27 100.00 100.00 100.00 100.00 81.53 100.00 100.00 88.10 100.00 100.00 100.00 100.00 100.00 89.41 100.00 83.19 80.00 100.00 100.00 100.00 100.00 100.00 86.67 100.00 100.00 100.00 100.00 100.00 85.96 100.00 100.00 100.00 K jcn_only_AA CG5270,I_chr3R_7253146_7253201,F_chr3R_7256294_7256363 chr3R + chr3R_7254775_7254841 chr3R_7254775_7254831 chr3R_7254647_7254774;chr3R_7254842_7255641 100.00 100.00 100.00 100.00 96.55 95.24 94.74 100.00 100.00 NA NA 95.74 NA 95.00 96.30 100.00 100.00 94.44 100.00 100.00 NA 98.21 92.11 100.00 95.65 93.10 100.00 NA 100.00 100.00 97.87 100.00 100.00 95.12 NA NA 100.00 NA 100.00 100.00 96.67 96.36 NA 100.00 NA 100.00 96.00 100.00 98.04 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 K intron_retention CG14235,noncoding_24847,CG18809 chrX - chrX_19636926_19637476 chrX_19636925_19636926;chrX_19637476_19637477 chrX_19636920_19636925;chrX_19637477_19637545 15.27 20.00 NA 26.09 NA NA 29.41 20.00 15.79 NA NA 24.14 NA NA NA 30.77 NA NA NA 20.45 NA 21.43 9.68 11.76 NA NA 25.00 35.71 2.70 NA NA NA 10.34 15.00 20.00 NA 10.81 13.04 7.69 36.36 NA 15.15 NA 5.56 3.85 23.08 0.00 5.56 25.00 12.50 15.38 16.67 0.00 0.00 NA 4.35 8.33 25.00 K intron_retention nudE chr3L + chr3L_9894119_9894442 chr3L_9894118_9894119;chr3L_9894442_9894443 chr3L_9893861_9894118;chr3L_9894443_9894534 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 2.27 2.50 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention SP2637,Gint3 chr2R - chr2R_14529302_14529363 chr2R_14529301_14529302;chr2R_14529363_14529364 chr2R_14529140_14529301;chr2R_14529364_14529572 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG12054 chr3R + chr3R_27046565_27046634 chr3R_27046569_27046634 chr3R_27046635_27046999;chr3R_27046436_27046564 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6051 chr3R - chr3R_22952344_22952415 chr3R_22952343_22952344;chr3R_22952415_22952416 chr3R_22951169_22952343;chr3R_22952416_22953488 0.00 0.00 6.25 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 3.12 0.00 0.00 NA 0.00 3.45 2.70 0.00 0.00 0.00 0.00 2.44 1.41 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_716153_716613;chr4_715043_716613 chr4_716066_716613 chr4_716614_716661 16.67 NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG14235,noncoding_24847,CG18809,noncoding_24848 chrX - chrX_19635199_19637988 chrX_19635202_19637988 chrX_19637989_19638057;chrX_19634765_19635198 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA 100.00 NA 100.00 NA 90.91 NA NA NA NA NA NA NA NA 88.89 NA NA 100.00 NA NA 88.89 NA 100.00 NA NA 100.00 NA NA 90.00 91.67 87.50 NA 100.00 100.00 NA NA 90.91 100.00 NA 100.00 100.00 NA K jcn_only_AD CG7224 chr2L + chr2L_7999176_7999248;chr2L_7999168_7999248;chr2L_7999174_7999248 chr2L_7999170_7999248 chr2L_7999249_7999714;chr2L_7998934_7999167 0.00 0.00 0.00 3.51 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 2.94 0.00 0.00 0.00 1.79 0.75 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG1640,RI_chrX_13265127_13267895,I_chrX_13265553_13267895,I_chrX_13265618_13267895,RI_chrX_13266680_13267895,RI_chrX_13267529_13267895,I_chrX_13271541_13271890 chrX + chrX_13265560_13267895;chrX_13265401_13267895;chrX_13265094_13267895;chrX_13265295_13267895 chrX_13265248_13267895 chrX_13267896_13267973;chrX_13265065_13265093 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 3.23 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3223 chr3R + chr3R_3835352_3835424 chr3R_3835351_3835352;chr3R_3835424_3835425 chr3R_3835192_3835351;chr3R_3835425_3835841 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 3.92 2.74 7.37 2.63 0.00 1.59 3.12 0.00 0.00 0.00 2.56 0.00 1.44 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 K jcn_only_AD lola,I_chr2R_6375932_6376866,RI_chr2R_6376649_6376866,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6375932_6419543 chr2R_6375932_6376866 chr2R_6375832_6375931;chr2R_6419544_6419624 4.08 NA NA NA NA NA 4.35 4.55 4.00 NA NA 9.68 NA NA NA NA NA 5.00 NA 6.45 NA 3.12 NA NA NA NA NA NA 4.17 15.00 NA NA 0.00 0.00 4.35 NA 4.00 NA NA 4.88 NA 4.00 NA 5.00 NA 0.00 NA 2.63 12.00 NA 3.85 NA NA NA 0.00 NA NA 1.92 K alternative_donor hppy,I_chr2R_15066378_15066915,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15066378_15067003;chr2R_15066243_15067003;chr2R_15066358_15067003 chr2R_15066304_15067003 chr2R_15067004_15067015;chr2R_15066237_15066242 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 8.33 0.00 0.00 0.00 K intron_retention CycT,I_chr3L_17548631_17550687 chr3L - chr3L_17545786_17545844 chr3L_17545785_17545786;chr3L_17545844_17545845 chr3L_17545613_17545785;chr3L_17545845_17546322 97.14 97.92 100.00 97.87 100.00 95.24 100.00 98.11 98.80 90.00 94.74 98.41 96.67 97.44 96.77 96.97 93.10 95.24 95.45 100.00 100.00 94.59 95.16 97.14 96.00 100.00 97.73 95.65 96.88 97.67 100.00 97.14 95.35 100.00 100.00 97.14 96.15 95.65 97.30 98.08 97.50 97.18 97.14 96.36 95.45 91.67 97.30 98.31 97.37 91.11 96.49 95.83 95.83 96.55 100.00 96.88 100.00 100.00 K cassette CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1528077_1531390 chr3L_1528077_1529105;chr3L_1529229_1531390 chr3L_1529106_1529228 chr3L_1528061_1528076;chr3L_1531391_1531522 88.89 88.24 82.61 55.17 81.82 89.47 90.91 84.62 91.67 75.00 93.33 90.32 35.71 86.67 95.83 91.67 93.33 93.33 90.91 84.09 87.50 89.66 89.47 92.86 94.12 90.91 79.17 75.00 85.71 84.62 80.95 85.71 81.82 86.21 95.00 100.00 89.74 88.00 92.59 82.86 78.95 89.47 84.62 83.33 94.74 85.19 87.50 92.68 93.10 64.71 92.00 100.00 95.24 81.25 77.27 88.89 90.91 89.47 K jcn_only_AA CG11897 chr3R + chr3R_24984070_24984223 chr3R_24984070_24984220 chr3R_24983872_24984069;chr3R_24984224_24984412 100.00 NA 100.00 NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA K intron_retention CG4250,I_chr2R_18551419_18551493,E_chr2R_18551558_18551756 chr2R + chr2R_18551627_18551679 chr2R_18551626_18551627;chr2R_18551679_18551680 chr2R_18551494_18551626;chr2R_18551680_18551701 7.10 7.56 4.93 8.97 6.72 6.69 7.17 7.82 6.50 15.71 11.88 8.70 5.86 5.80 5.65 4.80 6.87 5.26 6.02 6.59 7.10 17.86 10.81 7.47 13.33 14.29 11.63 11.43 44.34 7.56 11.64 6.45 4.68 5.90 9.50 12.85 7.83 10.00 7.85 8.90 9.63 6.84 6.67 6.11 5.24 4.19 7.42 6.91 6.20 10.70 9.88 8.72 6.38 5.99 5.34 6.45 4.68 2.74 K intron_retention CG7852,Cct1,Cct2 chr3L + chr3L_1537990_1538044 chr3L_1537989_1537990;chr3L_1538044_1538045 chr3L_1537524_1537989;chr3L_1538045_1538154 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 1.64 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG7816,RI_chr3R_25691122_25694436 chr3R - chr3R_25690713_25690778 chr3R_25690719_25690778 chr3R_25690779_25691121;chr3R_25690611_25690712 98.11 97.78 95.00 98.41 97.73 97.78 97.85 96.00 97.56 97.62 100.00 97.62 97.44 100.00 98.36 98.39 100.00 98.41 97.78 97.83 100.00 98.46 98.11 100.00 100.00 97.62 100.00 100.00 97.62 100.00 98.25 100.00 96.88 97.53 100.00 100.00 100.00 100.00 100.00 98.15 100.00 98.92 97.37 92.98 96.43 98.04 97.06 94.87 98.75 97.14 98.04 97.06 96.55 95.24 93.75 100.00 100.00 100.00 K alternative_acceptor PNGase,I_chr2R_1906759_1906817,I_chr2R_1906899_1906977 chr2R + chr2R_1906759_1906817 chr2R_1906759_1906813 chr2R_1906701_1906758;chr2R_1906818_1906898 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 97.14 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.46 96.00 98.48 100.00 100.00 97.14 96.15 100.00 100.00 100.00 100.00 100.00 99.05 K intron_retention sec23,I_chr3R_1474873_1475080,I_chr3R_1474899_1475080,I_chr3R_1474960_1475051,I_chr3R_1477727_1478102 chr3R + chr3R_1474873_1475080 chr3R_1474872_1474873;chr3R_1475080_1475081 chr3R_1474860_1474872;chr3R_1475081_1475151 100.00 96.15 97.06 100.00 100.00 100.00 100.00 98.63 100.00 100.00 100.00 98.44 100.00 96.88 100.00 98.39 97.78 100.00 100.00 100.00 100.00 100.00 100.00 96.15 95.45 97.22 100.00 96.30 100.00 100.00 97.44 100.00 100.00 98.48 100.00 92.86 100.00 100.00 100.00 97.14 100.00 98.77 100.00 100.00 94.12 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 K intron_retention Pk61C,CE_chr3L_129889_141769 chr3L + chr3L_141838_141894 chr3L_141837_141838;chr3L_141894_141895 chr3L_141770_141837;chr3L_141895_141931 100.00 100.00 100.00 99.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.24 100.00 100.00 99.38 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.55 100.00 100.00 100.00 100.00 100.00 100.00 99.02 98.59 99.64 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG14619,RI_chrX_21860097_21868647,I_chrX_21865109_21865522,I_chrX_21869837_21869915 chrX + chrX_21865109_21865374 chrX_21865108_21865109;chrX_21865374_21865375 chrX_21865070_21865108;chrX_21865375_21865439 66.67 50.00 NA 48.00 NA NA 75.00 80.00 68.18 NA NA 76.47 NA NA NA 52.94 NA NA 63.64 63.16 NA NA 58.82 NA NA 36.36 NA NA NA 86.67 58.82 NA 26.09 64.71 80.00 55.00 NA NA NA NA NA 68.75 70.00 NA NA NA NA 66.67 68.18 NA NA NA NA NA 77.78 NA NA 66.67 K alternative_acceptor CG17574,I_chr2R_8737398_8737465 chr2R - chr2R_8737544_8737603 chr2R_8737547_8737603 chr2R_8737604_8737733;chr2R_8737466_8737543 5.32 5.88 3.76 8.09 5.17 3.94 6.21 4.72 4.51 4.55 5.83 5.73 6.35 4.00 6.16 4.71 5.26 5.88 3.85 5.45 5.61 5.44 3.26 4.85 7.26 3.96 6.18 7.37 10.92 6.79 5.88 5.22 3.94 4.05 5.51 7.38 4.63 6.29 5.12 6.07 7.41 4.57 2.50 4.29 7.37 4.19 2.91 5.45 5.26 3.92 5.41 5.32 3.82 5.99 4.11 5.46 4.81 5.66 K intron_retention CG18522,CG18519 chr3R - chr3R_11361241_11361349 chr3R_11361240_11361241;chr3R_11361349_11361350 chr3R_11361007_11361240;chr3R_11361350_11362278 2.22 3.23 2.56 6.67 0.00 0.00 1.46 6.06 1.41 0.00 0.00 2.72 0.00 3.45 7.14 2.53 0.00 0.00 0.00 0.68 0.00 4.44 2.13 2.45 4.46 0.00 6.59 3.40 0.68 2.22 2.91 1.47 0.00 4.29 4.11 3.81 3.25 3.20 2.61 3.54 1.61 1.85 4.26 2.91 0.00 4.76 0.00 0.00 3.12 3.75 2.96 3.80 0.00 0.00 0.00 1.27 0.00 0.00 K alternative_last_exon Pax,RI_chr2L_19401373_19409403,RI_chr2L_19404683_19426205,RI_chr2L_19404823_19409403 chr2L - chr2L_19401373_19403998 chr2L_19403717_19403998 chr2L_19400737_19401372 chr2L_19402994_19403716 chr2L_19403999_19404682 18.01 14.63 19.86 4.09 21.43 18.71 16.60 8.33 16.80 33.91 27.78 24.04 20.83 22.38 23.64 12.27 18.66 23.93 17.33 22.82 22.58 22.22 21.36 18.92 22.99 32.33 16.88 27.56 25.71 18.52 18.42 14.37 22.30 16.73 15.85 17.05 18.49 16.41 16.17 20.87 16.59 17.80 15.15 15.18 18.35 12.87 8.28 30.35 18.01 9.86 16.34 19.73 9.56 7.26 17.88 7.69 4.63 10.56 K intron_retention scu,RhoGAP16F chrX + chrX_17990487_17990548 chrX_17990486_17990487;chrX_17990548_17990549 chrX_17989118_17990486;chrX_17990549_17990654 0.00 0.00 0.00 3.88 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9754481_9754629 chr2R_9754480_9754481;chr2R_9754629_9754630 chr2R_9754381_9754480;chr2R_9754630_9754660 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13163992_13164279 chrX_13163991_13163992;chrX_13164279_13164280 chrX_13163861_13163991;chrX_13164280_13164353 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG10737 chr2R + chr2R_15062592_15063752;chr2R_15062754_15063752 chr2R_15062814_15063752 chr2R_15063753_15063852;chr2R_15062387_15062591 69.23 67.01 73.33 51.59 64.86 90.91 80.77 77.33 66.49 76.74 68.57 70.59 78.08 79.71 86.42 54.64 76.06 62.65 77.11 69.79 71.21 51.20 60.48 72.64 70.77 59.74 50.00 53.70 75.34 63.04 82.83 81.40 35.44 54.86 56.96 75.61 42.24 61.63 69.23 70.93 89.66 69.27 67.14 74.14 71.88 84.91 77.36 57.76 67.22 43.75 68.00 65.62 68.24 68.35 74.51 56.48 71.03 62.09 K intron_retention RI_chrX_2612780_2612845,ttm50,crm chrX - chrX_2624923_2624981 chrX_2624922_2624923;chrX_2624981_2624982 chrX_2624799_2624922;chrX_2624982_2625510 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.28 0.00 0.00 0.44 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.28 0.00 0.00 0.50 0.53 0.00 0.00 0.59 0.31 0.00 0.00 0.00 0.00 K alternative_acceptor CG3589 chr2R + chr2R_20672784_20672850 chr2R_20672784_20672834 chr2R_20672324_20672783;chr2R_20672851_20672935 100.00 100.00 100.00 100.00 NA NA 100.00 94.74 94.44 NA 100.00 94.12 NA 100.00 100.00 93.33 100.00 100.00 NA 100.00 100.00 93.33 100.00 89.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 88.89 100.00 100.00 100.00 100.00 87.50 95.24 NA 90.91 90.91 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 83.33 94.74 95.24 92.31 K intron_retention CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525393_1525641 chr3L_1525392_1525393;chr3L_1525641_1525642 chr3L_1525293_1525392;chr3L_1525642_1525700 39.13 42.31 28.57 25.00 45.00 46.88 45.83 26.92 45.00 54.55 50.00 35.90 33.33 53.85 38.24 39.13 31.82 51.85 80.95 43.10 54.17 45.83 35.90 28.57 40.00 46.67 25.71 NA 43.48 45.45 35.71 38.10 39.13 46.15 35.29 17.65 52.00 29.17 37.04 50.98 39.13 40.62 34.78 52.63 25.00 39.29 36.00 43.24 33.33 27.59 36.84 36.84 34.78 40.00 66.67 44.00 32.35 38.46 K cassette C3G chrX - chrX_6680846_6681383 chrX_6680846_6681128;chrX_6681300_6681383 chrX_6681129_6681299 chrX_6680189_6680845;chrX_6681384_6681553 92.47 97.04 94.00 88.81 91.95 93.68 85.93 86.90 94.21 81.01 90.32 96.28 94.20 97.59 90.82 96.64 91.67 90.11 79.27 91.97 93.85 61.25 87.85 91.97 91.11 89.47 91.81 43.86 93.26 97.60 94.87 95.31 93.46 94.38 93.20 91.87 91.06 91.14 94.71 84.92 91.18 94.98 100.00 90.91 94.94 95.24 94.12 96.13 97.80 88.10 92.00 89.77 94.44 89.09 92.47 97.30 96.51 99.12 K intron_retention scf,CG9149,CG2469 chr3L + chr3L_1299201_1299318 chr3L_1299200_1299201;chr3L_1299318_1299319 chr3L_1298684_1299200;chr3L_1299319_1300430 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.15 0.00 0.00 0.06 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention WDR79,I_chr2L_6127541_6127609 chr2L - chr2L_6127554_6127609 chr2L_6127553_6127554;chr2L_6127609_6127610 chr2L_6126902_6127553;chr2L_6127610_6127709 6.46 NA 0.00 6.25 0.00 0.00 5.41 9.09 4.35 0.00 NA 0.00 9.09 0.00 7.14 0.00 NA NA 15.00 3.08 0.00 NA 14.29 NA NA 8.70 NA NA 17.65 NA 41.18 8.33 22.73 0.00 NA NA 12.50 NA 0.00 10.00 11.11 0.00 NA NA 6.25 16.67 NA 7.41 6.67 NA NA NA NA NA 8.00 12.50 0.00 5.41 K intron_retention par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,I_chr2R_15350149_15350210,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350149_15351846 chr2R_15350148_15350149;chr2R_15351846_15351847 chr2R_15350068_15350148;chr2R_15351847_15351914 92.31 NA NA 73.33 NA NA 100.00 100.00 100.00 NA NA 80.00 77.78 92.31 100.00 95.24 100.00 NA NA 94.74 NA 100.00 66.67 77.78 NA 76.92 NA NA 88.89 NA 90.91 NA NA 100.00 100.00 NA NA NA NA 88.89 NA 92.31 100.00 NA NA NA NA NA 93.75 NA 87.50 90.00 NA NA 88.89 NA NA NA K intron_retention CG14646 chr3R + chr3R_216292_216371 chr3R_216291_216292;chr3R_216371_216372 chr3R_216265_216291;chr3R_216372_216465 98.31 93.75 94.52 95.96 98.28 100.00 100.00 99.04 99.32 98.15 96.83 98.21 96.49 98.25 98.67 98.55 98.04 98.15 98.57 97.92 98.11 100.00 100.00 98.63 100.00 100.00 98.82 96.67 100.00 98.51 98.31 100.00 100.00 96.81 97.78 98.25 98.31 95.65 100.00 98.02 100.00 100.00 100.00 100.00 98.44 97.59 100.00 98.59 97.14 96.83 95.29 97.62 95.31 97.87 98.51 96.55 98.75 96.23 K alternative_donor Pten,I_chr2L_10256507_10256803,F_chr2L_10259663_10260253 chr2L - chr2L_10260585_10260741;chr2L_10260585_10260853 chr2L_10260585_10260729 chr2L_10260254_10260584;chr2L_10260854_10260860 45.30 NA 37.50 53.33 NA NA 41.18 68.42 61.11 NA NA 27.78 62.50 50.00 NA 55.00 NA NA 37.50 40.00 NA 33.33 40.00 16.67 50.00 NA NA NA 42.86 60.00 42.86 NA NA 38.89 33.33 57.14 50.00 33.33 60.00 44.44 66.67 38.46 37.50 46.15 NA 71.43 NA 62.50 47.37 NA 33.33 42.86 NA NA 50.00 NA NA 57.14 K alternative_acceptor CG11006,F_chr3L_12799159_12799339 chr3L + chr3L_12804689_12804747;chr3L_12804689_12804774 chr3L_12804689_12804777 chr3L_12803828_12804688;chr3L_12804778_12804986 36.00 56.00 38.10 24.00 45.45 50.00 34.78 37.04 33.33 46.67 28.57 30.56 21.05 40.00 30.00 27.27 38.46 26.67 26.32 38.46 55.00 27.27 28.00 35.29 25.00 25.00 40.91 33.33 37.50 44.44 30.00 45.45 34.62 16.00 13.33 23.53 32.35 41.18 44.74 37.84 33.33 40.00 38.46 45.16 36.00 40.00 39.13 42.50 16.67 37.84 48.00 11.11 36.36 38.89 28.00 34.62 36.00 39.47 K intron_retention Arpc3B,noncoding_24328 chrX - chrX_16999020_16999360 chrX_16999019_16999020;chrX_16999360_16999361 chrX_16998601_16999019;chrX_16999361_16999422 88.89 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 77.78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG14801 chrX + chrX_1738121_1744652 chrX_1738120_1738121;chrX_1744652_1744653 chrX_1737725_1738120;chrX_1744653_1746506 6.25 8.82 6.25 12.82 6.25 9.09 10.00 8.33 8.51 5.71 9.68 10.77 16.67 13.51 9.30 12.00 6.25 6.82 10.26 4.21 12.90 2.65 10.20 0.00 4.44 15.56 9.52 19.67 8.47 8.00 5.66 0.00 3.95 6.76 5.00 3.70 5.80 7.69 6.82 5.38 0.00 8.08 11.76 4.84 0.00 2.13 0.00 3.64 6.49 0.00 0.00 4.65 0.00 0.00 15.38 0.00 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389272_2395659 chrX_2389272_2389644;chrX_2389762_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2395659 chrX_2389645_2389761;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664 chrX_2389172_2389271;chrX_2395660_2395759 33.33 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Mekk1 chr3R - chr3R_14559087_14559150 chr3R_14559086_14559087;chr3R_14559150_14559151 chr3R_14558739_14559086;chr3R_14559151_14559330 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 1.14 3.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 K intron_retention gish chr3R + chr3R_12098835_12100306 chr3R_12098834_12098835;chr3R_12100306_12100307 chr3R_12098822_12098834;chr3R_12100307_12100597 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.32 100.00 100.00 100.00 100.00 100.00 100.00 99.22 98.11 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 K alternative_acceptor CG14235,noncoding_24847,CG18809,noncoding_24848 chrX - chrX_19635202_19638294;chrX_19635236_19638294 chrX_19635199_19638294 chrX_19638295_19638317;chrX_19634765_19635198 59.31 59.64 60.28 57.47 61.62 63.45 58.89 62.50 60.97 56.30 61.40 58.81 60.83 59.81 64.59 56.61 58.06 62.60 59.51 58.65 63.46 56.36 58.37 60.29 57.93 59.23 63.48 60.74 50.00 60.00 57.23 62.82 43.48 60.06 53.76 53.39 59.31 66.02 60.63 63.73 51.25 62.88 56.32 58.97 55.08 52.31 60.00 52.63 59.06 54.91 59.76 56.42 59.85 58.50 56.63 63.41 60.94 56.57 K intron_retention mbc,I_chr3R_19615584_19615649,I_chr3R_19625220_19625288 chr3R + chr3R_19625220_19625285 chr3R_19625219_19625220;chr3R_19625285_19625286 chr3R_19625120_19625219;chr3R_19625286_19625372 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 1.47 0.82 0.00 0.00 0.00 0.00 0.00 0.00 5.15 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette tmod,I_chr3R_26402545_26402900,I_chr3R_26402561_26402900,I_chr3R_26403024_26403083 chr3R + chr3R_26398795_26403838 chr3R_26398795_26402900;chr3R_26403281_26403838 chr3R_26402901_26403280 chr3R_26398695_26398794;chr3R_26403839_26404436 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.27 100.00 100.00 100.00 99.21 100.00 99.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2814327_2816013;chr2R_2813804_2816013 chr2R_2814327_2814894,chr2R_2813804_2814894;chr2R_2815657_2816013 chr2R_2814895_2815656 chr2R_2813704_2813803;chr2R_2816014_2816113 14.29 16.07 13.16 22.41 13.04 12.90 16.67 8.33 13.95 11.90 16.00 19.44 11.76 15.15 10.26 21.88 13.16 12.00 14.29 15.86 18.18 12.20 17.86 20.88 26.09 14.29 15.62 29.17 17.86 16.67 9.68 15.62 20.00 15.52 13.24 24.07 16.79 15.71 19.27 13.85 11.43 12.94 16.67 8.57 13.21 10.00 10.29 14.42 10.96 11.11 11.84 10.53 11.48 12.50 16.67 11.90 15.56 11.39 K intron_retention I_chrX_1962457_1964222,CG4045 chrX - chrX_1969005_1969070 chrX_1969004_1969005;chrX_1969070_1969071 chrX_1968805_1969004;chrX_1969071_1969172 3.33 0.00 3.96 5.45 0.00 1.22 2.53 0.00 5.50 5.56 0.00 4.29 7.04 2.35 2.38 13.73 0.00 10.14 3.57 3.05 4.44 23.94 4.55 1.96 3.33 1.35 11.54 8.00 13.33 2.70 1.94 3.20 4.82 3.77 3.12 5.33 7.14 5.19 6.42 4.76 3.33 3.36 3.57 1.89 2.10 3.19 7.29 1.66 2.48 2.90 4.30 0.00 2.11 1.89 4.12 3.39 1.72 1.60 K intron_retention MED6,CG9471,CG12946,I_chr3R_5599701_5600032,I_chr3R_5609682_5609889 chr3R - chr3R_5593367_5593424 chr3R_5593366_5593367;chr3R_5593424_5593425 chr3R_5593300_5593366;chr3R_5593425_5593560 100.00 90.91 92.31 100.00 100.00 100.00 96.15 94.12 97.06 100.00 100.00 100.00 100.00 93.33 93.33 96.00 100.00 100.00 100.00 96.88 93.75 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 95.65 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 NA 100.00 90.91 86.36 94.12 100.00 97.22 K alternative_donor CG11284,I_chrX_8581798_8581850,Ogg1 chrX + chrX_8581776_8581850 chrX_8581798_8581850 chrX_8581851_8581950;chrX_8581698_8581775 0.79 1.18 0.00 0.00 1.03 0.00 0.87 0.00 0.52 1.85 1.41 0.68 0.00 1.10 0.88 1.83 0.00 0.00 1.12 0.00 1.33 1.50 1.09 1.00 1.72 1.08 1.11 0.00 0.00 0.00 0.79 0.00 0.78 0.72 1.33 0.00 0.97 0.00 0.00 0.79 1.32 1.24 1.43 0.00 0.95 0.81 0.00 0.95 0.00 0.00 1.04 0.00 0.00 1.09 2.00 0.00 0.00 0.00 K jcn_only_AA Papss chr3L + chr3L_19838731_19851477 chr3L_19838731_19841269 chr3L_19838635_19838730 2.33 7.14 2.86 0.00 3.03 0.00 9.62 7.89 5.95 0.00 0.00 4.35 NA 8.70 2.13 0.00 2.94 0.00 12.12 1.41 0.00 4.44 5.45 0.00 0.00 2.86 5.26 2.00 0.00 8.89 3.45 0.00 1.92 1.85 NA 3.45 0.00 0.00 2.33 4.11 9.52 2.82 0.00 1.96 1.82 6.25 2.17 4.11 3.08 1.96 2.08 3.85 0.00 3.85 6.25 3.85 0.00 0.00 K jcn_only_AD slmb,I_chr3R_16951107_16953048 chr3R - chr3R_16951107_16953115 chr3R_16951107_16952659 chr3R_16951007_16951106;chr3R_16953116_16953148 100.00 98.51 100.00 99.19 100.00 100.00 100.00 100.00 98.98 98.48 100.00 98.53 98.59 100.00 97.73 99.15 100.00 97.14 100.00 99.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.12 100.00 100.00 100.00 95.76 100.00 98.61 98.82 99.09 100.00 100.00 98.99 100.00 98.31 98.41 97.40 100.00 100.00 98.51 100.00 98.92 98.46 99.11 100.00 100.00 100.00 98.21 100.00 100.00 98.39 K intron_retention CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907848_9908531 chr2L_9907847_9907848;chr2L_9908531_9908532 chr2L_9907756_9907847;chr2L_9908532_9908619 98.59 100.00 96.55 100.00 100.00 100.00 100.00 97.56 98.55 100.00 94.44 100.00 95.00 96.15 100.00 98.11 95.83 100.00 96.67 98.94 89.47 95.74 98.61 97.73 97.83 100.00 100.00 95.00 98.04 98.55 100.00 100.00 98.04 97.87 100.00 98.59 98.11 100.00 100.00 98.44 100.00 100.00 96.15 100.00 96.00 98.00 97.92 97.78 100.00 100.00 98.33 96.67 100.00 100.00 100.00 97.22 100.00 100.00 K alternative_donor CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25318474_25319136;chr3R_25318474_25319142;chr3R_25318474_25318925;chr3R_25318474_25319093;chr3R_25318474_25318971;chr3R_25318474_25319004;chr3R_25318474_25319167 chr3R_25318474_25319163 chr3R_25318374_25318473;chr3R_25319168_25319224 1.90 2.19 1.76 1.56 1.81 2.07 1.67 2.30 2.46 3.15 1.79 1.99 3.23 0.00 2.22 0.72 1.54 0.70 2.78 2.18 2.13 1.98 1.01 2.05 1.50 1.95 2.22 2.38 2.88 2.12 3.23 1.39 3.51 1.47 1.80 0.75 2.24 3.91 3.27 0.88 1.72 1.53 0.74 2.65 0.92 1.30 1.90 0.00 1.38 2.49 1.24 1.71 2.04 1.68 1.69 2.54 1.18 2.13 K alternative_acceptor Cp190,I_chr3R_11100788_11100846,F_chr3R_11104164_11104239 chr3R - chr3R_11100321_11100846;chr3R_11100788_11100846 chr3R_11100334_11100846 chr3R_11100847_11100931;chr3R_11099837_11100320 87.10 82.76 88.37 91.38 84.00 82.35 81.13 88.33 86.67 93.33 89.19 89.04 89.19 89.19 83.78 86.89 84.38 92.50 86.84 90.52 84.62 87.50 85.94 81.82 90.91 86.49 80.49 76.60 89.58 84.00 84.21 89.29 87.69 84.62 88.89 94.00 83.33 80.00 82.86 86.73 92.59 86.76 85.19 89.19 94.59 89.58 89.36 92.08 82.54 87.10 83.87 87.50 89.74 87.88 86.96 87.50 83.87 94.87 K intron_retention yuri,F_chr2L_15260838_15261717 chr2L - chr2L_15263129_15263331 chr2L_15263128_15263129;chr2L_15263331_15263332 chr2L_15262970_15263128;chr2L_15263332_15263664 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.95 0.00 0.72 0.00 0.00 0.00 3.23 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 K jcn_only_AD lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6394546_6419543,I_chr2R_6397642_6398119,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6397642_6419543 chr2R_6397642_6398119 chr2R_6397549_6397641;chr2R_6419544_6419624 1.98 0.00 0.00 4.85 2.04 6.15 13.68 0.82 1.72 13.33 0.00 1.85 0.00 3.64 4.23 2.08 0.00 16.00 5.00 6.41 5.45 0.89 0.00 1.33 0.00 8.06 6.33 0.00 1.56 1.11 6.45 1.49 1.19 4.08 2.27 0.00 1.98 0.00 3.15 2.52 1.41 3.36 0.00 2.78 7.94 1.06 6.06 0.65 5.36 0.00 1.02 0.00 2.70 2.44 3.33 0.00 5.88 1.01 K intron_retention CG3191,CG3091,I_chrX_2147635_2147990 chrX - chrX_2144421_2144476 chrX_2144420_2144421;chrX_2144476_2144477 chrX_2144262_2144420;chrX_2144477_2144613 12.50 NA NA 36.36 NA NA NA 6.25 NA NA NA 0.00 NA NA NA NA NA NA NA 23.53 NA NA 0.00 NA NA 16.67 NA 18.75 43.75 NA 5.56 NA NA 23.08 NA 7.69 NA NA NA 0.00 12.50 18.52 NA NA 12.50 19.05 7.69 NA 13.33 0.00 7.69 NA NA NA NA NA NA NA K alternative_acceptor CG17737,I_chr3L_3223527_3224313,I_chr3L_3223943_3224313 chr3L + chr3L_3223415_3223474 chr3L_3223415_3223462 chr3L_3223400_3223414;chr3L_3223475_3223526 95.70 94.00 88.37 93.01 92.86 91.94 95.28 93.85 94.59 100.00 92.73 92.41 86.73 95.70 92.31 95.12 94.29 86.79 93.14 88.33 89.47 100.00 100.00 96.97 100.00 98.70 100.00 96.15 100.00 100.00 91.43 97.78 96.15 93.41 97.87 100.00 100.00 94.74 100.00 97.06 100.00 90.97 90.32 100.00 97.06 98.04 90.70 88.57 89.73 98.15 97.78 96.77 96.77 100.00 92.86 100.00 97.18 93.75 K intron_retention Tango5,noncoding_22970,I_chrX_10659836_10661185 chrX - chrX_10656468_10658117 chrX_10656467_10656468;chrX_10658117_10658118 chrX_10656442_10656467;chrX_10658118_10658283 73.33 75.00 NA NA NA NA 94.74 92.86 94.44 NA NA 76.47 NA NA 100.00 91.67 NA NA 91.67 92.00 NA 66.67 90.91 63.64 NA 66.67 92.86 73.33 46.67 71.43 90.00 NA 88.89 86.67 NA 57.14 66.67 NA 72.73 63.64 90.00 70.00 NA 60.00 NA 56.25 46.15 NA 73.33 NA 72.73 NA NA NA 90.00 NA 53.85 NA K intron_retention ps,I_chr3R_5269733_5270765 chr3R + chr3R_5272220_5273350 chr3R_5272219_5272220;chr3R_5273350_5273351 chr3R_5271691_5272219;chr3R_5273351_5275004 42.98 45.69 41.09 53.09 37.89 33.33 41.72 51.89 43.13 45.12 50.00 48.44 60.91 43.86 50.39 58.75 44.14 42.59 50.00 37.65 36.94 51.32 36.16 36.36 39.58 42.98 37.91 44.27 59.57 50.00 38.94 50.00 55.00 48.47 40.78 42.51 36.88 40.00 44.12 49.74 40.82 41.98 46.73 42.94 34.33 48.67 31.40 70.44 43.90 30.69 38.15 31.63 52.94 32.73 40.71 32.89 37.50 70.00 K alternative_donor smi35A,E_chr2L_14222082_14233578,E_chr2L_14222082_14233893,RI_chr2L_14233579_14233647 chr2L - chr2L_14229537_14233578;chr2L_14229537_14233893 chr2L_14229537_14233647 chr2L_14229532_14229536;chr2L_14233894_14233993 74.19 66.67 83.33 68.00 66.67 63.64 86.11 74.19 85.11 66.67 81.82 71.43 66.67 78.95 80.00 64.29 77.78 57.14 75.00 52.94 77.78 84.21 84.21 85.71 71.43 84.62 68.42 83.33 75.00 NA 86.67 66.67 52.94 64.29 71.43 78.57 60.00 75.00 NA 85.00 NA 82.76 71.43 76.92 NA 70.00 NA 72.22 71.88 84.21 80.00 75.00 NA NA 68.75 NA 70.00 50.00 K intron_retention Sap-r,I_chr3R_26712627_26714606,RI_chr3R_26713323_26714382 chr3R - chr3R_26709840_26709896 chr3R_26709839_26709840;chr3R_26709896_26709897 chr3R_26709698_26709839;chr3R_26709897_26710372 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.03 0.04 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.30 0.12 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32103,I_chr3L_12398261_12403200 chr3L - chr3L_12405557_12406547 chr3L_12405556_12405557;chr3L_12406547_12406548 chr3L_12405430_12405556;chr3L_12406548_12406971 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2389073;chrX_2389272_2389644;chrX_2389762_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2393243 chrX_2389074_2389271;chrX_2389645_2389761;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664 chrX_2387149_2387248;chrX_2393244_2393291 0.00 NA NA NA NA NA NA NA NA NA NA 2.70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor mri,RI_chr3L_201061_201173,I_chr3L_212783_212843 chr3L + chr3L_201061_201173 chr3L_201061_201170 chr3L_200990_201060;chr3L_201174_201273 91.49 84.85 90.91 70.83 94.12 91.67 97.30 93.75 94.44 100.00 94.74 96.97 92.31 85.71 96.43 92.59 87.10 96.00 90.91 90.00 90.91 78.95 90.91 88.89 94.44 92.59 97.78 91.89 96.55 79.17 94.12 89.29 100.00 93.02 91.67 80.00 85.48 87.50 92.00 91.49 81.25 92.45 91.67 88.57 93.33 89.19 90.70 92.31 90.48 92.73 84.62 86.11 84.00 88.00 94.59 89.47 88.37 83.33 K intron_retention CG1116 chr3R + chr3R_1045578_1045640 chr3R_1045577_1045578;chr3R_1045640_1045641 chr3R_1045416_1045577;chr3R_1045641_1045855 14.29 25.00 NA 0.00 NA 0.00 0.00 14.29 6.67 NA NA 17.14 NA NA 21.05 NA NA 7.69 NA 15.91 NA NA 26.92 12.50 23.53 12.50 30.00 NA 41.67 23.81 46.67 0.00 12.50 6.25 NA 8.00 22.22 6.67 12.50 10.34 NA 17.39 NA NA 0.00 16.00 14.29 NA 10.71 7.69 9.52 36.36 14.29 16.00 NA 22.22 18.75 13.33 K intron_retention Unr,DMG4-MB6.chr3L.15.021 chr3L - chr3L_8429790_8429864 chr3L_8429789_8429790;chr3L_8429864_8429865 chr3L_8429346_8429789;chr3L_8429865_8430072 94.81 94.25 96.00 99.38 98.73 95.00 95.31 97.47 96.57 88.89 98.41 95.54 96.05 92.11 95.61 97.12 95.52 97.47 95.06 95.30 97.37 96.23 94.81 91.23 91.21 93.94 94.81 98.68 91.86 91.86 94.25 93.75 99.07 95.36 93.20 94.12 95.15 97.96 94.63 93.85 92.16 96.02 92.21 93.33 91.67 93.44 96.10 94.44 96.09 97.44 94.30 91.36 92.16 90.70 96.19 93.62 89.19 89.74 K intron_retention CG5463 chr3R - chr3R_19955588_19955645 chr3R_19955587_19955588;chr3R_19955645_19955646 chr3R_19955474_19955587;chr3R_19955646_19955790 0.00 NA NA 0.00 NA NA 0.00 3.85 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA 11.11 NA K jcn_only_AA miple2,I_chr3L_274251_274594 chr3L + chr3L_274031_274103 chr3L_274031_274081 chr3L_273550_274030;chr3L_274104_274241 0.00 0.00 1.08 0.72 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.30 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.52 0.00 0.00 0.00 0.00 K jcn_only_AD Eph,I_chr4_631523_634240,I_chr4_631555_631910,I_chr4_631643_631910,I_chr4_639690_640473,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_631555_631910;chr4_631523_631910 chr4_631643_631910 chr4_631911_632010;chr4_631455_631522 0.00 NA 4.35 0.00 NA 0.00 0.00 0.00 4.41 NA NA 1.79 3.12 0.00 0.00 1.22 0.00 0.00 3.85 0.00 NA NA 0.00 0.00 NA NA 3.70 NA NA NA 3.23 NA NA 3.33 0.00 NA NA NA NA 2.86 NA 2.22 0.00 NA NA NA NA 7.41 1.79 NA 0.00 NA NA NA 0.00 NA NA NA K alternative_donor faf,RI_chr3R_27603474_27603893,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27602901_27603893 chr3R_27602905_27603893 chr3R_27603894_27603993;chr3R_27602832_27602900 94.44 92.31 94.44 84.00 90.91 95.00 85.71 92.59 97.56 92.86 100.00 91.67 93.75 89.47 86.36 96.43 100.00 100.00 94.44 91.43 94.12 90.32 97.30 96.30 94.44 95.45 96.55 91.67 100.00 93.75 82.61 NA 88.89 96.97 89.47 95.24 96.00 96.30 92.86 96.97 NA 94.44 93.33 100.00 NA 90.91 90.00 100.00 97.22 100.00 97.14 92.59 90.91 NA 96.30 100.00 100.00 NA K intron_retention I_chr2L_114992_156735,RI_chr2L_114992_155545,RI_chr2L_114992_155566,I_chr2L_114992_155637,I_chr2L_114992_156175,RI_chr2L_155430_155637,CG11455,CG3436 chr2L + chr2L_155411_155465 chr2L_155410_155411;chr2L_155465_155466 chr2L_155406_155410;chr2L_155466_155784 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG14442,RI_chrX_6586052_6586105,I_chrX_6586147_6586435 chrX - chrX_6585388_6586435 chrX_6585387_6585388;chrX_6586435_6586436 chrX_6583705_6585387;chrX_6586436_6586535 0.00 0.00 0.00 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 3.92 4.76 0.00 0.00 0.00 6.25 3.23 10.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 2.08 6.35 0.00 0.00 0.00 0.00 0.00 0.00 3.08 2.08 1.05 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Myb,RI_chrX_15752571_15753225 chrX - chrX_15751695_15751749 chrX_15751694_15751695;chrX_15751749_15751750 chrX_15751683_15751694;chrX_15751750_15751876 100.00 100.00 100.00 100.00 100.00 100.00 98.88 100.00 99.21 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 96.77 96.43 100.00 100.00 96.43 100.00 100.00 K intron_retention CG9934 chr2L - chr2L_13014292_13014350 chr2L_13014291_13014292;chr2L_13014350_13014351 chr2L_13013949_13014291;chr2L_13014351_13014675 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 8.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3638,REI_chrX_1128310_1128786,RI_chrX_1128313_1130468,I_chrX_1132012_1132060 chrX - chrX_1120316_1127835 chrX_1120315_1120316;chrX_1127835_1127836 chrX_1120138_1120315;chrX_1127836_1128309 12.90 4.76 13.33 4.55 NA 14.29 9.52 19.05 12.50 10.53 NA 8.00 NA 10.53 18.18 12.12 20.00 29.41 15.79 15.15 NA 26.67 5.26 8.70 0.00 13.33 0.00 NA NA 13.04 12.50 NA 26.67 12.90 12.50 6.25 16.00 NA 10.81 15.15 NA 19.35 23.08 0.00 NA 17.65 14.29 12.50 15.15 14.81 8.00 5.88 NA NA 20.00 12.50 NA NA K intron_retention fs(1)K10 chrX + chrX_2137638_2138489 chrX_2137637_2137638;chrX_2138489_2138490 chrX_2136854_2137637;chrX_2138490_2140081 6.46 NA 6.25 NA NA NA NA 9.09 8.70 NA 0.00 19.35 NA NA 15.00 17.65 NA 0.00 NA 18.75 12.50 NA 7.14 7.14 NA NA NA NA 6.67 0.00 0.00 0.00 2.94 19.05 NA NA 0.00 NA NA 5.00 0.00 17.39 NA 4.76 5.56 9.09 7.14 5.26 27.78 5.88 NA NA 0.00 NA 10.00 NA NA 3.45 K jcn_only_AD crol,I_chr2L_11799403_11802904 chr2L - chr2L_11800323_11802904;chr2L_11800323_11802370;chr2L_11800323_11802343 chr2L_11800323_11802286 chr2L_11800155_11800322;chr2L_11802905_11803004 48.76 51.65 43.97 29.66 43.85 48.76 47.22 56.33 49.70 63.04 51.48 47.00 53.39 45.70 44.34 55.60 54.82 38.65 46.98 46.44 55.65 29.77 48.74 48.42 47.24 44.49 48.05 30.61 56.47 50.00 46.84 56.14 48.70 53.23 45.79 45.02 48.42 44.99 50.53 56.83 53.09 47.20 52.91 54.36 46.97 48.94 50.00 47.37 48.05 53.88 54.40 49.43 58.18 49.66 44.41 51.72 57.06 55.56 K intron_retention CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20824631_20825667 chr2L_20824630_20824631;chr2L_20825667_20825668 chr2L_20824625_20824630;chr2L_20825668_20825758 89.19 94.23 83.10 92.06 81.48 89.71 90.91 87.64 86.17 95.74 93.02 89.93 77.36 93.10 84.21 90.83 72.00 87.93 82.76 88.83 86.54 90.48 95.88 92.68 97.56 92.00 97.53 90.28 88.16 81.63 83.72 86.21 76.19 76.92 98.51 98.78 92.86 92.00 98.98 81.03 83.33 85.71 89.19 82.09 81.44 87.63 98.57 68.32 85.50 95.74 92.31 92.00 87.14 99.02 88.46 95.59 93.85 62.38 K jcn_only_AD CG7510,I_chr3L_17622707_17622884 chr3L + chr3L_17621448_17621526 chr3L_17621472_17621526 chr3L_17621527_17621595;chr3L_17621379_17621447 54.37 53.09 53.57 45.15 65.43 67.21 55.09 60.11 60.19 50.00 56.52 59.20 67.96 61.90 61.21 60.14 60.98 56.25 62.16 49.76 56.73 61.86 44.33 52.54 43.75 52.17 46.03 53.66 30.77 40.23 54.37 33.33 37.80 52.98 58.82 40.74 51.81 52.08 55.71 48.48 42.86 57.65 61.43 62.35 37.78 50.00 58.00 27.54 56.21 44.44 56.34 64.15 57.14 53.33 54.17 53.97 61.82 56.60 K intron_retention mtSSB,I_chr3R_12030259_12030507 chr3R - chr3R_12030259_12030615 chr3R_12030258_12030259;chr3R_12030615_12030616 chr3R_12030159_12030258;chr3R_12030616_12030724 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.51 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.83 1.85 1.24 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.34 1.01 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.38 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.28 0.00 K intron_retention CG12582 chr3R + chr3R_23285_23458 chr3R_23284_23285;chr3R_23458_23459 chr3R_23137_23284;chr3R_23459_23593 3.31 2.70 3.70 3.41 3.50 4.32 7.58 3.47 4.18 1.71 2.08 3.24 4.12 2.27 2.56 2.82 3.64 3.31 1.96 3.28 3.47 19.74 2.54 4.73 7.41 6.92 5.67 3.54 8.47 1.61 3.00 3.00 3.02 3.06 1.98 5.76 3.87 3.45 5.65 3.15 2.82 4.03 3.55 1.94 1.45 1.25 4.17 2.88 3.04 2.14 3.66 1.67 1.79 3.45 3.80 2.27 3.54 1.66 K alternative_donor CG31712,I_chr2L_9935570_9935951,CREI_chr2L_9938511_9938564,RI_chr2L_9942818_9944294,I_chr2L_9944682_9947179 chr2L - chr2L_9935570_9937237 chr2L_9935570_9935951 chr2L_9935486_9935569;chr2L_9937238_9937510 65.91 51.22 71.88 53.97 68.18 66.67 72.00 65.52 73.44 66.67 75.00 70.00 54.17 65.62 74.29 83.78 73.08 67.74 70.00 56.32 69.57 63.27 70.45 62.16 95.45 42.86 66.67 77.42 40.00 62.00 64.10 50.00 48.61 68.52 68.97 80.95 63.41 60.61 76.47 80.28 48.78 74.60 64.29 66.67 36.54 65.91 59.38 56.00 75.00 57.14 62.22 57.14 54.55 52.00 77.14 66.67 56.25 42.50 K alternative_donor mia chr3R - chr3R_1374911_1375314 chr3R_1374911_1375297 chr3R_1374048_1374910;chr3R_1375315_1375484 9.09 NA NA NA NA NA NA NA 9.09 NA NA 23.53 NA NA NA 14.29 NA NA NA 6.25 NA NA 10.53 7.41 NA NA 14.29 NA NA NA 55.56 NA NA NA NA NA 10.71 4.76 9.09 0.00 NA 25.00 NA NA NA NA NA NA 5.56 16.67 8.70 NA NA 5.00 NA 6.67 15.38 NA K alternative_donor Pif1A,RI_chr3R_4623769_4624181,I_chr3R_4623769_4626415,RI_chr3R_4623769_4626596,I_chr3R_4624232_4625183 chr3R - chr3R_4623769_4625183 chr3R_4623769_4624181 chr3R_4623669_4623768;chr3R_4625184_4625283 8.89 6.25 3.85 9.68 7.14 15.79 13.79 7.69 14.29 NA 12.50 8.57 18.18 6.90 9.52 14.29 8.70 10.00 8.33 12.90 7.14 6.25 10.71 9.09 7.69 5.00 13.04 16.67 4.76 12.50 5.88 0.00 16.67 8.06 5.56 3.85 18.18 7.69 12.50 7.69 6.25 7.14 5.00 11.11 NA 4.55 9.09 9.52 14.29 9.09 4.35 13.33 NA 10.00 7.69 9.09 10.00 5.56 K intron_retention lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6394546_6419543,I_chr2R_6404486_6419543,R_chr2R_6408775_6419537,I_chr2R_6409616_6419543,I_chr2R_6413368_6414281,I_chr2R_6419625_6419686,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6412139_6419543 chr2R_6412138_6412139;chr2R_6419543_6419544 chr2R_6411002_6412138;chr2R_6419544_6419624 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 97.87 NA 100.00 100.00 100.00 100.00 100.00 98.00 100.00 92.86 100.00 97.50 90.91 88.89 96.00 100.00 91.67 100.00 94.12 86.36 91.67 90.91 89.47 100.00 94.74 100.00 100.00 93.75 100.00 92.86 100.00 96.00 100.00 100.00 100.00 100.00 80.00 100.00 NA 95.83 91.89 100.00 94.44 91.67 100.00 90.00 100.00 100.00 88.89 93.75 K intron_retention cora,I_chr2R_15116651_15116928,I_chr2R_15129291_15129988 chr2R + chr2R_15116620_15116928 chr2R_15116619_15116620;chr2R_15116928_15116929 chr2R_15116580_15116619;chr2R_15116929_15117028 0.00 3.77 0.00 1.64 0.00 0.00 1.30 0.42 0.00 NA 1.15 1.13 0.00 0.00 0.00 2.14 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 2.35 NA NA 0.00 0.00 0.00 0.00 0.00 1.29 NA NA 0.00 0.00 0.00 0.00 NA 1.52 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.98 NA 0.00 NA K alternative_donor for,I_chr2L_3627621_3631522 chr2L - chr2L_3627636_3631976;chr2L_3627636_3631522;chr2L_3627636_3631804 chr2L_3627636_3631962 chr2L_3626337_3627635;chr2L_3631977_3632151 0.00 NA NA 25.00 NA NA NA 0.00 20.00 NA NA 25.00 NA NA NA 0.00 0.00 NA 0.00 33.33 NA 20.00 0.00 33.33 NA NA 0.00 NA NA 0.00 0.00 NA 50.00 25.00 20.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA 0.00 33.33 0.00 0.00 0.00 NA NA NA NA NA NA NA K alternative_acceptor CG1116 chr3R + chr3R_1045578_1045640 chr3R_1045578_1045637 chr3R_1045416_1045577;chr3R_1045641_1045855 29.63 36.84 25.00 16.67 NA 16.67 22.22 33.33 30.00 NA NA 32.56 NA 50.00 25.00 NA NA 25.00 NA 30.19 NA 33.33 29.63 30.00 18.75 26.32 36.36 36.36 46.15 27.27 42.86 22.73 39.13 28.57 29.41 30.30 33.33 22.22 28.21 29.73 NA 40.62 25.00 25.00 19.23 27.59 29.41 NA 26.47 25.00 29.63 41.67 28.00 36.36 30.77 36.36 40.91 35.00 K intron_retention CG1646,I_chr3R_24640561_24640869,I_chr3R_24641816_24641874 chr3R + chr3R_24642521_24642578 chr3R_24642520_24642521;chr3R_24642578_24642579 chr3R_24641875_24642520;chr3R_24642579_24643082 0.00 0.00 0.00 2.83 0.00 0.00 0.00 1.32 0.88 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 K intron_retention Gyk,I_chr3L_203620_207231,I_chr3L_207277_208117 chr3L - chr3L_205473_205664 chr3L_205472_205473;chr3L_205664_205665 chr3L_205368_205472;chr3L_205665_205838 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Start1,I_chr2R_20463661_20463716 chr2R + chr2R_20462823_20462884 chr2R_20462822_20462823;chr2R_20462884_20462885 chr2R_20462674_20462822;chr2R_20462885_20463043 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.15 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.88 2.27 0.00 0.00 0.00 NA 0.00 0.00 3.70 1.79 0.00 0.00 0.00 0.00 0.00 4.65 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Rox8,I_chr3R_19872211_19872659,I_chr3R_19872214_19872630,I_chr3R_19872214_19872636,I_chr3R_19872214_19872838,I_chr3R_19876189_19876240 chr3R - chr3R_19872214_19873136;chr3R_19872214_19873214 chr3R_19872214_19873220 chr3R_19872114_19872213;chr3R_19873221_19873284 18.34 NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 25.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD nmdyn-D7 chr3R + chr3R_5505776_5505995 chr3R_5505932_5505995 chr3R_5505996_5506162;chr3R_5505694_5505775 100.00 100.00 95.83 100.00 100.00 100.00 94.74 96.77 97.87 100.00 100.00 95.45 NA 100.00 100.00 96.43 100.00 100.00 100.00 93.62 NA NA 97.44 97.62 100.00 100.00 94.44 NA 90.91 100.00 100.00 100.00 96.77 96.97 100.00 100.00 98.11 100.00 97.83 97.14 87.50 97.67 100.00 100.00 94.59 100.00 96.43 97.14 97.78 100.00 96.55 100.00 NA 100.00 91.18 96.97 100.00 100.00 K alternative_acceptor CG4365 chr3L + chr3L_20791819_20791876 chr3L_20791819_20791867 chr3L_20791802_20791818;chr3L_20791877_20791959 94.44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor Ptp99A,I_chr3R_25302126_25302175 chr3R + chr3R_25305548_25307191 chr3R_25305548_25307188 chr3R_25305229_25305547;chr3R_25307192_25307198 6.67 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.56 NA 14.29 NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA K intron_retention Fmr1,I_chr3R_5934794_5935245,I_chr3R_5934801_5935537 chr3R - chr3R_5929941_5930010 chr3R_5929940_5929941;chr3R_5930010_5930011 chr3R_5929929_5929940;chr3R_5930011_5930518 61.55 NA NA NA NA NA NA NA NA NA NA NA 57.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 65.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_last_exon piwi,noncoding_2526,RI_chr2L_10986838_10987248 chr2L - chr2L_10986129_10987248 chr2L_10986879_10987248 chr2L_10985544_10986128 chr2L_10986383_10986878 chr2L_10987249_10987348 0.00 2.56 0.00 0.00 0.00 2.56 0.00 1.35 1.09 0.00 0.00 1.33 0.00 2.33 0.00 2.13 2.78 0.00 2.04 1.82 0.00 0.00 1.56 0.00 2.86 2.63 0.00 0.00 0.00 0.00 1.96 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 2.78 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 K intron_retention CG32685,CREI_chrX_9967445_9972518 chrX - chrX_9969661_9972518 chrX_9969660_9969661;chrX_9972518_9972519 chrX_9969177_9969660;chrX_9972519_9972618 6.19 0.00 0.00 16.22 8.70 0.00 28.57 13.95 7.14 0.00 0.00 9.26 7.41 13.04 8.33 13.04 8.70 0.00 9.68 6.19 0.00 2.04 8.11 8.33 7.14 13.79 8.33 10.00 0.00 13.33 11.11 0.00 3.03 16.28 0.00 5.00 0.00 0.00 0.00 1.59 6.35 6.33 13.04 4.17 0.00 2.60 9.52 0.00 8.06 5.00 9.09 0.00 3.45 0.00 0.00 0.00 7.41 3.03 K jcn_only_AD CG1347 chr3R + chr3R_1495452_1499211;chr3R_1496295_1499211 chr3R_1495515_1499211 chr3R_1499212_1502282;chr3R_1495435_1495451 0.00 0.00 0.00 1.92 3.57 0.00 1.72 0.00 0.00 NA 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 NA 4.76 2.08 0.00 0.00 2.86 0.00 0.00 0.00 NA 1.61 0.00 2.13 NA 0.00 0.00 2.44 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K alternative_donor CG8709,I_chr2R_4027128_4027182,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030636,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4030580_4033259;chr2R_4030580_4030636 chr2R_4030580_4033256 chr2R_4030480_4030579;chr2R_4033260_4033265 1.54 2.27 0.00 2.35 0.00 0.00 2.33 2.50 1.85 5.88 0.00 0.00 0.00 2.63 2.86 0.00 4.65 0.00 1.54 2.53 3.23 0.00 5.48 1.69 0.00 0.00 3.23 0.00 2.63 2.33 0.00 0.00 2.86 1.28 3.03 2.56 2.08 0.00 0.00 2.04 0.00 2.11 2.44 2.17 5.56 0.00 0.00 2.94 0.00 0.00 1.45 0.00 0.00 5.26 1.85 0.00 0.00 0.00 K jcn_only_AD CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516706_21517821;chr3L_21516330_21517821;chr3L_21517168_21517821;chr3L_21516722_21517821;chr3L_21516501_21517821;chr3L_21516918_21517821;chr3L_21516343_21517821;chr3L_21516728_21517821 chr3L_21516399_21517821 chr3L_21517822_21517920;chr3L_21516311_21516329 16.00 22.73 16.00 26.32 30.00 14.29 11.86 19.05 14.00 NA NA 21.43 NA 8.70 28.00 26.92 15.00 10.00 NA 11.67 NA 48.00 21.21 9.09 NA 10.00 23.81 NA 6.82 NA 15.38 NA 0.00 14.29 NA 5.00 28.57 12.50 NA 18.75 NA 16.95 21.74 24.24 NA 25.00 38.10 4.76 11.48 NA NA NA NA NA 22.22 NA NA 10.00 K jcn_only_AD CSN5 chr3R + chr3R_12296792_12296850;chr3R_12296786_12296850 chr3R_12296683_12296850 chr3R_12296851_12297070;chr3R_12296215_12296682 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention m-cup chr3R - chr3R_12971587_12971648 chr3R_12971586_12971587;chr3R_12971648_12971649 chr3R_12971174_12971586;chr3R_12971649_12971774 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 6.67 NA 5.56 0.00 0.00 5.56 0.00 9.09 7.32 0.00 7.14 2.78 0.00 0.00 0.00 0.00 0.00 NA 0.00 8.00 NA NA 0.00 0.00 0.00 0.00 7.41 0.00 0.00 NA 2.63 NA 8.00 0.00 0.00 0.00 NA 0.00 0.00 3.45 0.00 4.76 0.00 0.00 0.00 0.00 0.00 K intron_retention eas,REI_chrX_16172581_16177702 chrX + chrX_16175307_16177702 chrX_16175306_16175307;chrX_16177702_16177703 chrX_16175011_16175306;chrX_16177703_16177802 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 K intron_retention CG3342 chrX - chrX_6421710_6421783 chrX_6421709_6421710;chrX_6421783_6421784 chrX_6420139_6421709;chrX_6421784_6421931 0.00 0.00 6.25 0.00 NA 0.00 NA NA 10.71 NA NA 3.33 NA NA NA 0.00 NA NA 7.69 0.00 NA 0.00 0.00 3.70 NA NA NA NA NA NA 0.00 NA NA 0.00 NA 5.56 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 K alternative_acceptor Atet,chr2L_4334987_4335394.0,chr2L_4335788_4336447.0 chr2L + chr2L_4334105_4336500 chr2L_4334105_4336449 chr2L_4333926_4334104;chr2L_4336501_4336957 92.86 100.00 90.00 92.86 NA NA 90.91 100.00 94.12 NA NA 100.00 91.67 90.00 100.00 100.00 85.71 87.50 100.00 100.00 NA 96.00 90.00 NA NA 85.71 100.00 87.50 90.00 90.00 85.71 NA 71.43 100.00 100.00 100.00 NA NA NA 90.91 90.91 91.67 NA 100.00 NA 100.00 NA 100.00 100.00 85.71 87.50 100.00 NA NA 100.00 100.00 88.89 91.67 K intron_retention BM-40-SPARC,I_chr3R_22696095_22696231,I_chr3R_22696095_22696291,I_chr3R_22696095_22697413 chr3R - chr3R_22696095_22696291 chr3R_22696094_22696095;chr3R_22696291_22696292 chr3R_22695995_22696094;chr3R_22696292_22696331 96.87 88.89 100.00 100.00 NA 100.00 100.00 100.00 92.00 NA NA 95.00 100.00 100.00 100.00 94.44 100.00 100.00 91.67 97.44 100.00 100.00 88.89 92.31 94.12 100.00 94.12 NA 91.67 NA 100.00 88.89 NA 100.00 100.00 100.00 100.00 NA 81.82 92.86 100.00 91.67 92.86 NA 93.33 93.75 100.00 92.31 96.30 90.00 100.00 90.91 NA NA 100.00 91.67 92.31 NA K intron_retention Eb1,I_chr2R_2642491_2642549 chr2R + chr2R_2642623_2642689 chr2R_2642622_2642623;chr2R_2642689_2642690 chr2R_2642550_2642622;chr2R_2642690_2643135 0.25 0.00 0.00 1.14 0.00 1.05 0.34 0.58 1.03 0.00 0.00 0.60 0.00 0.00 0.40 0.63 0.00 0.00 0.40 0.49 0.00 0.00 0.95 0.00 0.00 0.00 1.83 6.74 0.57 0.00 0.00 0.00 0.44 0.27 0.56 0.59 0.00 0.00 1.04 0.00 0.00 0.50 0.00 0.00 0.46 0.00 0.79 0.25 0.54 0.00 0.38 0.00 0.00 1.09 0.76 0.00 0.62 0.53 K intron_retention RpL12,I_chr2R_19948517_19948682 chr2R + chr2R_19947968_19948035 chr2R_19947967_19947968;chr2R_19948035_19948036 chr2R_19947923_19947967;chr2R_19948036_19948097 18.52 26.92 20.59 6.90 17.50 10.53 30.77 8.00 21.74 23.08 7.69 14.89 14.29 18.52 9.09 16.67 10.00 15.15 9.80 16.00 20.00 27.27 52.63 30.00 60.00 37.31 31.58 11.86 74.24 11.76 36.36 20.00 5.41 11.90 21.05 26.32 55.00 30.77 41.67 4.12 11.76 14.93 8.33 5.88 11.32 17.24 35.00 10.34 29.41 33.33 41.67 27.27 10.96 46.15 7.58 39.13 35.00 12.30 K intron_retention CG9775,I_chr3R_464132_464367,I_chr3R_466059_466296 chr3R - chr3R_465475_465590 chr3R_465474_465475;chr3R_465590_465591 chr3R_465356_465474;chr3R_465591_465733 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 97.78 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.25 100.00 96.00 100.00 100.00 100.00 100.00 96.77 100.00 98.89 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.35 96.00 100.00 94.12 100.00 96.30 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 95.00 94.44 95.24 K intron_retention CG8520,RI_chr2R_8311415_8311865,RI_chr2R_8311474_8311865,I_chr2R_8312580_8312637 chr2R + chr2R_8311614_8311670 chr2R_8311613_8311614;chr2R_8311670_8311671 chr2R_8311088_8311613;chr2R_8311671_8312273 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 4.55 0.00 1.67 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 4.55 0.00 5.13 4.76 4.44 0.00 2.99 0.00 0.00 7.84 0.00 0.00 0.00 2.94 0.00 1.67 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 4.17 K jcn_only_AA tay,I_chrX_15774035_15774320,I_chrX_15779977_15780538,RI_chrX_15780874_15781045,I_chrX_15783766_15785978 chrX - chrX_15774035_15774320 chrX_15774255_15774320 chrX_15774321_15774420;chrX_15773935_15774034 96.67 98.84 98.39 94.29 100.00 97.30 91.38 94.51 96.67 100.00 97.87 97.59 97.83 100.00 97.67 95.45 97.83 96.00 94.12 97.39 95.12 50.68 96.00 95.19 94.52 88.68 93.75 98.55 94.20 98.63 96.36 93.55 95.16 95.24 98.28 100.00 97.22 95.56 100.00 99.27 95.24 96.04 96.88 98.59 100.00 100.00 95.92 97.14 94.19 97.67 98.08 96.36 95.00 93.10 91.07 98.04 100.00 91.49 N jcn_only_AA CG13895,RI_chr3L_707623_707678,RI_chr3L_711692_711744 chr3L - chr3L_707623_707889 chr3L_707810_707889 chr3L_707890_707997;chr3L_707523_707622 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG10249,I_chr2R_10790537_10790639 chr2R - chr2R_10789909_10790015 chr2R_10789909_10790011 chr2R_10789708_10789908;chr2R_10790016_10790228 0.00 0.00 0.00 0.00 8.33 2.56 4.00 2.44 0.00 NA 0.00 1.72 2.08 0.00 0.00 0.00 0.00 0.00 NA 1.28 3.45 0.00 0.00 1.85 0.00 0.00 0.00 0.00 NA NA 0.00 4.17 NA 2.33 NA 3.03 0.00 0.00 0.00 2.86 NA 0.00 NA 0.00 0.00 3.85 0.00 NA 4.23 3.57 2.70 0.00 4.08 2.33 5.00 0.00 0.00 0.00 K intron_retention par-1,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15361060_15361117 chr2R_15361059_15361060;chr2R_15361117_15361118 chr2R_15360945_15361059;chr2R_15361118_15361245 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3L_3223943_3224313,CG11505 chr3L + chr3L_3232240_3232300 chr3L_3232239_3232240;chr3L_3232300_3232301 chr3L_3231909_3232239;chr3L_3232301_3232406 31.25 NA NA 31.25 NA NA NA 19.05 33.33 NA NA 22.22 41.67 16.67 NA NA NA NA NA 20.00 NA 41.67 36.36 NA NA NA 46.15 83.33 NA NA NA NA 31.25 23.81 NA NA NA NA NA 35.71 NA 19.23 NA NA NA NA NA NA 29.41 NA NA NA NA NA 45.45 NA NA NA N jcn_only_AA Trc8 chr3R - chr3R_25326236_25326440;chr3R_25325222_25326440 chr3R_25326221_25326440 chr3R_25326441_25326615 50.00 55.96 49.28 47.00 53.33 43.24 62.90 42.86 50.60 28.75 56.34 53.79 56.82 44.07 61.63 46.03 51.47 60.87 49.21 52.53 60.00 48.11 60.43 47.79 48.75 39.19 46.09 41.49 46.00 56.60 59.30 42.42 50.47 50.88 51.69 24.68 44.51 41.28 46.71 52.00 50.00 52.73 57.41 58.89 42.97 47.79 52.21 48.84 56.03 49.12 54.87 42.50 48.65 51.65 40.00 50.46 56.41 43.24 N alternative_acceptor growl chr3R + chr3R_229003_230190 chr3R_229003_229955 chr3R_228731_229002;chr3R_230191_230361 0.79 0.58 0.77 0.96 0.87 1.19 0.79 1.11 0.66 1.23 1.03 0.97 1.08 1.06 0.51 1.67 0.65 0.87 0.66 1.20 1.00 3.61 0.57 0.49 0.38 0.54 1.00 0.78 0.50 1.02 1.30 1.01 0.78 1.32 0.59 0.56 0.79 0.46 0.52 0.64 0.93 0.65 0.79 0.76 0.76 0.80 1.17 0.70 0.86 0.90 1.07 0.62 0.28 0.55 0.74 1.16 0.73 0.50 K jcn_only_AD I_chr3R_8822346_8822403,CG7518 chr3R + chr3R_8827698_8828350 chr3R_8828286_8828350 chr3R_8828351_8828431;chr3R_8827671_8827697 8.43 7.14 2.94 5.26 14.29 NA 16.67 8.93 4.35 NA NA 10.29 NA 8.00 10.34 8.16 0.00 4.55 6.45 8.70 NA 31.11 7.02 13.89 NA 3.12 6.98 NA NA NA 17.65 9.52 13.04 11.36 NA NA 6.67 NA 10.34 10.53 NA 4.55 7.41 12.73 NA NA 3.85 NA 21.05 3.45 6.52 10.00 NA NA 4.65 11.54 30.00 NA K intron_retention CG11266,RI_chr2L_7033019_7034764,I_chr2L_7034274_7035406,RI_chr2L_7034911_7035074,I_chr2L_7051093_7051366 chr2L + chr2L_7034911_7035406 chr2L_7034910_7034911;chr2L_7035406_7035407 chr2L_7034869_7034910;chr2L_7035407_7035506 90.91 94.44 92.31 100.00 94.44 100.00 100.00 83.33 93.33 78.57 83.33 90.91 94.44 100.00 85.00 90.00 92.31 91.67 92.31 92.86 100.00 76.00 83.87 88.57 91.30 100.00 94.74 100.00 90.91 94.44 85.71 91.67 73.91 89.29 77.78 NA 81.08 77.27 75.00 86.36 90.91 91.18 92.31 85.00 100.00 81.48 80.95 85.19 89.19 83.33 84.38 86.67 94.74 76.92 88.89 82.35 100.00 95.45 K alternative_acceptor CG4389,I_chr2L_9576230_9576665 chr2L - chr2L_9576230_9576517 chr2L_9576381_9576517 chr2L_9576518_9576757;chr2L_9576130_9576229 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.53 0.36 0.00 0.00 0.57 0.00 0.00 0.83 0.82 0.00 0.00 0.00 0.68 0.00 5.56 0.77 0.96 1.18 1.12 0.00 1.14 0.00 0.00 1.01 0.00 1.23 0.00 1.20 0.00 0.83 0.00 0.00 1.26 0.00 0.00 0.00 0.92 1.59 0.00 0.00 1.09 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 K alternative_donor myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_716153_716322;chr4_716153_716613 chr4_716153_716627 chr4_716072_716152;chr4_716628_716661 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 4.35 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K jcn_only_AD nrv2,I_chr2L_6791842_6794492,I_chr2L_6793397_6794492,I_chr2L_6793405_6793916,I_chr2L_6793405_6794499,I_chr2L_6793684_6794492 chr2L - chr2L_6793405_6794328;chr2L_6793405_6794316;chr2L_6793405_6794551 chr2L_6793405_6794492 chr2L_6793305_6793404;chr2L_6794552_6794592 98.57 95.00 97.92 96.88 100.00 100.00 100.00 100.00 96.81 100.00 90.48 98.91 100.00 100.00 92.11 97.80 100.00 100.00 95.24 98.17 100.00 97.73 100.00 100.00 96.55 100.00 97.73 NA 100.00 100.00 97.67 96.43 96.77 92.54 95.92 96.30 98.59 100.00 100.00 98.21 100.00 94.12 100.00 100.00 100.00 97.59 100.00 100.00 98.97 95.12 95.00 98.11 100.00 100.00 98.55 96.43 95.71 95.95 N jcn_only_AA None chrU + chrU_1179335_1184352;chrU_1179335_1184082 chrU_1179335_1183262 96.83 95.04 97.85 74.00 96.23 98.67 97.07 94.46 96.05 97.37 94.94 97.47 95.83 95.14 97.35 98.26 98.27 94.64 96.80 96.95 97.89 94.74 93.94 95.35 96.83 98.50 99.24 94.00 99.17 98.00 86.47 98.26 100.00 98.08 97.92 98.25 94.25 97.18 95.00 98.32 95.76 97.55 96.32 98.98 93.62 97.14 95.18 96.54 98.25 91.18 95.21 96.88 96.43 97.37 96.80 92.13 86.44 97.12 K intron_retention Pfk,I_chr2R_5999081_6000140,E_chr2R_6001157_6001630 chr2R + chr2R_6001740_6002421 chr2R_6001739_6001740;chr2R_6002421_6002422 chr2R_6001718_6001739;chr2R_6002422_6002610 10.27 9.09 14.29 NA 0.00 5.88 27.27 12.50 14.00 0.00 10.00 10.00 NA NA NA NA NA NA 0.00 0.00 11.76 NA 16.67 20.00 NA NA 21.05 14.29 10.00 4.76 0.00 NA 0.00 15.38 NA NA 11.36 NA 6.45 20.00 0.00 16.00 NA 15.00 6.67 5.26 NA 5.56 0.00 12.50 23.81 25.00 NA 14.29 10.53 7.14 NA NA N alternative_donor CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806824_22807254;chr3R_22806425_22807254;chr3R_22806725_22807254 chr3R_22806454_22807254 chr3R_22807255_22807473;chr3R_22806325_22806424 2.38 1.02 1.88 1.02 2.94 2.03 7.75 0.49 0.66 8.70 2.54 1.00 1.18 1.06 2.23 0.51 1.49 1.46 0.97 1.00 1.49 3.03 1.83 2.53 4.84 2.67 3.51 11.76 5.00 4.44 1.95 7.46 5.43 0.88 3.30 4.44 2.78 2.33 6.12 3.74 6.78 0.51 1.12 3.17 6.82 2.38 3.08 3.23 0.87 4.44 1.64 3.17 1.72 4.00 1.46 2.38 1.32 2.75 K alternative_acceptor VhaPPA1-1,I_chr3R_10728645_10728933 chr3R - chr3R_10729610_10729672 chr3R_10729614_10729672 chr3R_10729673_10729699;chr3R_10729545_10729609 95.87 95.93 95.18 93.93 94.41 97.41 95.87 95.58 95.71 95.31 95.83 93.22 95.07 94.29 95.08 96.33 97.04 94.97 96.28 94.27 96.20 97.15 96.65 96.91 95.51 95.67 94.42 95.96 97.65 94.89 94.21 96.19 95.87 97.09 97.55 93.36 95.90 96.63 95.37 95.36 96.22 96.50 96.20 94.12 95.32 96.89 97.91 96.96 94.58 96.20 96.00 98.99 94.78 94.51 96.03 96.79 94.78 96.73 K alternative_donor rdgBbeta,I_chr2R_13584056_13584177,CRE_chr2R_13584378_13585329 chr2R - chr2R_13584056_13584177 chr2R_13584056_13584116 chr2R_13583956_13584055;chr2R_13584178_13584246 100.00 100.00 90.91 94.44 NA 100.00 90.91 95.00 95.83 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 92.31 100.00 NA 85.71 100.00 NA 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 85.71 87.50 92.86 90.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 95.65 100.00 93.33 100.00 100.00 100.00 100.00 93.33 100.00 100.00 K intron_retention I_chr3L_834336_834491,CG13887,Gr61a chr3L + chr3L_837946_838021 chr3L_837945_837946;chr3L_838021_838022 chr3L_837877_837945;chr3L_838022_838624 91.67 87.50 92.86 91.43 NA 93.33 92.16 87.10 85.19 100.00 83.33 86.67 72.73 88.89 95.00 82.61 90.00 90.91 87.50 84.38 91.67 100.00 94.44 100.00 100.00 98.11 100.00 88.24 94.74 NA 100.00 NA 100.00 80.77 100.00 100.00 NA 72.73 100.00 94.44 92.86 82.61 87.50 92.31 78.57 76.47 91.67 60.00 90.48 93.33 100.00 93.33 NA NA 91.67 100.00 90.91 84.62 K alternative_donor CG4293,RI_chrX_423385_423664,I_chrX_423385_423676 chrX - chrX_423564_423676 chrX_423564_423664 chrX_423443_423563;chrX_423677_423764 57.19 64.29 44.44 88.89 NA 87.50 100.00 63.64 78.57 NA NA 61.11 NA 50.00 60.00 66.67 NA NA NA 55.56 NA 29.41 68.75 71.43 66.67 NA 58.82 64.71 46.15 36.36 NA NA 55.56 55.56 61.54 53.33 69.23 44.44 60.87 46.15 NA 47.06 NA 54.55 41.67 55.56 66.67 77.78 58.82 66.67 43.48 NA 40.00 42.86 NA 47.37 55.00 50.00 K cassette CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3083810_3085203 chr3L_3083810_3084807;chr3L_3084901_3085203 chr3L_3084808_3084900 chr3L_3083733_3083809;chr3L_3085204_3085298 8.85 8.33 9.09 4.81 8.51 10.91 3.70 13.33 13.19 3.23 12.50 32.61 11.11 12.00 8.11 12.33 14.58 21.28 10.71 8.73 13.16 20.00 5.45 10.91 4.65 7.41 12.28 6.67 4.69 6.78 9.09 5.00 7.04 12.71 8.11 12.24 9.52 6.82 8.20 7.62 8.33 12.84 12.28 12.50 5.66 4.84 7.89 3.55 8.85 14.71 12.33 10.64 4.65 9.68 10.00 3.23 6.25 5.32 K alternative_acceptor Zyx102EF,I_chr4_1079131_1080044,I_chr4_1079946_1080044,RI_chr4_1079959_1080044,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1079978_1080044;chr4_1079959_1080044 chr4_1079915_1080044 chr4_1080045_1080072;chr4_1079859_1079914 55.56 63.16 66.67 51.02 75.00 56.25 17.50 57.69 56.90 NA 52.94 48.72 50.00 47.62 62.50 65.52 52.00 63.16 50.00 55.81 58.33 50.00 66.67 42.86 46.67 50.00 56.25 70.00 NA 63.64 60.00 63.64 66.67 58.00 58.33 17.65 50.00 30.00 50.00 54.55 66.67 51.11 62.96 64.29 70.00 43.75 50.00 50.00 54.90 18.18 50.00 40.00 55.56 12.50 51.85 61.54 66.67 76.19 K multi_cassette Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CE_chr2R_11826384_11826741,I_chr2R_11826763_11826990,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824089_11827414 chr2R_11824089_11825619;chr2R_11825773_11825951;chr2R_11826484_11826541;chr2R_11826763_11827414 chr2R_11825620_11825772;chr2R_11825952_11826483;chr2R_11826542_11826762 chr2R_11823989_11824088;chr2R_11827415_11827523 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor I_chr2R_13460029_13460240,Dcr-2,I_chr2R_13466001_13466061,I_chr2R_13466001_13466072 chr2R - chr2R_13466001_13466072;chr2R_13466001_13466058 chr2R_13466001_13466061 chr2R_13465901_13466000;chr2R_13466073_13466161 3.33 0.00 7.41 0.00 7.69 6.67 2.78 5.56 6.12 9.09 0.00 0.00 5.00 5.56 4.76 6.45 0.00 6.25 5.26 2.70 0.00 0.00 0.00 0.00 8.33 15.79 3.33 5.26 6.67 6.25 3.12 0.00 6.67 6.25 0.00 0.00 5.56 0.00 0.00 5.00 0.00 0.00 5.56 4.76 20.00 0.00 0.00 0.00 7.89 7.69 0.00 0.00 0.00 0.00 3.70 12.50 0.00 0.00 K intron_retention CG13993 chr2L + chr2L_6069251_6069346 chr2L_6069250_6069251;chr2L_6069346_6069347 chr2L_6069112_6069250;chr2L_6069347_6069489 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.52 0.00 0.00 0.00 0.00 0.81 1.71 0.00 3.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.62 0.00 N jcn_only_AD CG17255,I_chrX_10366177_10366615,RI_chrX_10366177_10367270 chrX - chrX_10366177_10367360;chrX_10366177_10367201;chrX_10366177_10367458;chrX_10366177_10367270;chrX_10366177_10368085 chrX_10366177_10366615 chrX_10366077_10366176;chrX_10368086_10368118 0.84 0.00 0.85 0.54 1.18 0.00 1.36 0.00 1.61 0.00 0.00 0.42 0.00 1.60 1.28 0.58 0.84 0.00 1.96 0.51 0.00 0.56 1.59 2.16 0.00 0.00 0.85 1.08 2.82 0.77 1.54 2.17 0.39 0.53 0.84 2.04 0.00 0.00 1.00 1.54 0.00 0.83 1.00 3.88 1.25 0.00 3.70 0.00 0.93 0.00 2.08 1.41 1.64 2.50 0.60 1.67 3.57 0.00 K intron_retention CG6672,I_chr3R_7041333_7041414,I_chr3R_7041347_7041556,RI_chr3R_7044164_7044221 chr3R - chr3R_7039599_7039669 chr3R_7039598_7039599;chr3R_7039669_7039670 chr3R_7039179_7039598;chr3R_7039670_7039866 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 1.82 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 K intron_retention Jupiter,I_chr3R_7417030_7419354,I_chr3R_7417630_7417716,I_chr3R_7418347_7445425,RI_chr3R_7442793_7445425 chr3R - chr3R_7417030_7418088 chr3R_7417029_7417030;chr3R_7418088_7418089 chr3R_7416930_7417029;chr3R_7418089_7418346 1.05 1.14 0.87 1.10 1.44 0.61 1.30 1.36 1.23 1.43 1.25 1.05 0.63 1.03 1.06 1.83 0.70 1.15 0.67 1.02 1.82 0.75 1.11 1.05 0.88 0.96 1.47 1.36 0.54 0.43 0.63 0.48 0.38 1.39 1.40 0.64 1.23 1.21 0.84 0.97 1.00 0.81 1.45 0.76 0.76 0.90 0.92 1.35 1.18 1.23 2.57 1.46 0.79 0.85 1.27 0.82 1.10 0.71 K alternative_acceptor CG15160 chr2L + chr2L_18593414_18593478 chr2L_18593414_18593457 chr2L_18593290_18593413;chr2L_18593479_18593586 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 4.17 0.00 0.00 4.44 0.00 2.70 2.78 1.89 0.00 0.00 0.00 0.00 0.00 0.00 2.13 7.41 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 2.04 0.00 2.94 K intron_retention CG6498,I_chr3L_15561224_15561305 chr3L + chr3L_15567187_15567255 chr3L_15567186_15567187;chr3L_15567255_15567256 chr3L_15566029_15567186;chr3L_15567256_15567571 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.64 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA yuri,F_chr2L_15260838_15261717 chr2L - chr2L_15262627_15262969 chr2L_15262821_15262969 chr2L_15262970_15263128 0.26 0.00 0.00 1.00 0.00 0.00 0.47 0.35 0.26 0.88 0.85 0.00 3.42 0.63 0.43 0.96 0.00 0.00 0.67 0.26 0.00 2.38 0.00 0.00 0.83 0.00 0.61 0.00 0.00 0.97 1.18 0.00 0.22 0.40 0.56 0.00 0.00 0.70 0.00 0.28 1.63 0.00 0.00 0.00 2.00 0.68 0.59 0.67 0.29 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.35 0.24 K intron_retention RhoGAP102A chr4 + chr4_282351_282402 chr4_282350_282351;chr4_282402_282403 chr4_282299_282350;chr4_282403_282439 66.67 NA NA NA NA NA NA 62.50 NA NA NA 66.67 NA NA NA 90.91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 81.25 NA NA NA NA NA NA NA NA NA K intron_retention CE_chrX_20766225_20927825,CG1518,snoRNA:Me28S-U3344b chrX - chrX_20921853_20922152 chrX_20921852_20921853;chrX_20922152_20922153 chrX_20920991_20921852;chrX_20922153_20922632 0.86 1.12 0.00 0.76 0.00 0.65 0.86 1.32 0.80 0.47 1.19 0.60 0.70 2.07 1.05 2.82 0.00 0.00 2.33 0.86 0.00 1.25 1.07 0.72 0.80 0.00 1.69 2.28 0.00 0.00 1.14 1.56 0.45 1.65 0.96 0.00 0.90 0.00 0.19 1.06 0.00 1.37 0.93 1.01 0.97 0.33 0.53 1.67 1.07 1.02 1.34 1.19 0.55 0.29 1.35 0.00 0.00 1.76 K jcn_only_AA apt chr2R + chr2R_19485154_19485218 chr2R_19485154_19485215 chr2R_19484907_19485153;chr2R_19485219_19487028 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 K intron_retention CG14785,CG14786,ns3 chrX - chrX_1349729_1349782 chrX_1349728_1349729;chrX_1349782_1349783 chrX_1349235_1349728;chrX_1349783_1349982 33.33 NA NA NA NA NA NA NA 41.67 NA NA 11.76 NA NA NA 41.67 NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA 16.67 NA NA 33.33 NA NA NA NA NA NA NA NA NA K intron_retention CG31531,I_chr3R_485548_485960,I_chr3R_485608_485960,noncoding_14584,I_chr3R_486122_506500,I_chr3R_496573_505950,I_chr3R_523978_526879 chr3R + chr3R_485616_485960 chr3R_485615_485616;chr3R_485960_485961 chr3R_485362_485615;chr3R_485961_486060 100.00 100.00 100.00 96.88 92.86 100.00 100.00 100.00 98.11 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 90.91 96.97 100.00 100.00 94.44 100.00 100.00 100.00 100.00 93.75 97.37 100.00 100.00 100.00 94.44 NA 97.30 96.43 100.00 95.24 100.00 100.00 NA 100.00 NA NA 96.00 K intron_retention Jupiter,RI_chr3R_7442793_7445425 chr3R - chr3R_7416736_7416893 chr3R_7416735_7416736;chr3R_7416893_7416894 chr3R_7416108_7416735;chr3R_7416894_7417029 100.00 100.00 100.00 99.87 100.00 100.00 99.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.88 100.00 100.00 100.00 100.00 100.00 99.71 100.00 99.76 100.00 100.00 100.00 100.00 100.00 100.00 99.77 100.00 100.00 100.00 100.00 99.86 99.86 100.00 100.00 100.00 100.00 99.90 100.00 99.79 100.00 100.00 100.00 100.00 100.00 99.84 100.00 99.84 100.00 100.00 N jcn_only_AA Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629613_2629913;chr3L_2629585_2629913;chr3L_2629684_2629913;chr3L_2629527_2629913;chr3L_2629597_2629913 chr3L_2629579_2629913 chr3L_2629914_2629921;chr3L_2629427_2629526 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG11284,I_chrX_8581798_8581850,Ogg1 chrX + chrX_8581988_8582075 chrX_8581988_8582069 chrX_8581919_8581987;chrX_8582076_8582138 100.00 100.00 100.00 99.20 100.00 100.00 100.00 100.00 99.60 100.00 100.00 100.00 100.00 100.00 98.57 99.29 100.00 100.00 100.00 99.64 100.00 99.20 99.60 100.00 100.00 100.00 100.00 99.22 100.00 100.00 100.00 100.00 100.00 100.00 99.16 100.00 100.00 100.00 99.49 100.00 100.00 100.00 100.00 99.44 99.25 100.00 100.00 100.00 100.00 100.00 100.00 99.40 100.00 99.44 100.00 100.00 99.42 100.00 K alternative_donor I_chr3L_834336_834491,Gr61a chr3L + chr3L_842355_842410 chr3L_842359_842410 chr3L_842411_842577;chr3L_842164_842354 55.56 54.55 NA 72.73 NA NA NA 57.14 54.55 NA NA 63.64 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA 77.78 NA NA NA 66.67 NA 50.00 55.56 66.67 NA 57.14 30.77 76.92 46.67 NA 47.06 NA NA NA 60.00 63.64 NA 54.55 66.67 56.25 NA NA 54.55 NA 38.89 46.15 41.67 N jcn_only_AA sax,CG1882 chr2R + chr2R_3700498_3700802 chr2R_3700498_3700785 chr2R_3699932_3700497;chr2R_3700803_3702250 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.60 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG9007,I_chr3L_13995402_13996269,I_chr3L_13995402_13996272,I_chr3L_13995402_13996296,I_chr3L_13995480_13996292,RI_chr3L_14010982_14011111 chr3L + chr3L_13995402_13996296;chr3L_13995402_13996292;chr3L_13995402_13996269 chr3L_13995402_13996272 chr3L_13995380_13995401;chr3L_13996297_13996360 0.00 NA 0.00 0.00 NA NA 0.00 5.26 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA K mutually_exclusive Cda5 chr2L - chr2L_29069_33844,chr2L_34289_34557 chr2L_29069_30393,chr2L_33271_34557 chr2L_33845_34288 chr2L_30394_33270 chr2L_29024_29068;chr2L_34558_34596 0.00 NA 0.00 NA NA NA NA 0.00 0.00 NA NA 100.00 NA NA NA 0.00 NA 0.00 NA 0.00 NA 0.00 NA 0.00 NA 25.00 NA NA 0.00 NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 K intron_retention I_chr2L_1163632_1163759,Plap chr2L - chr2L_1167955_1168011 chr2L_1167954_1167955;chr2L_1168011_1168012 chr2L_1167135_1167954;chr2L_1168012_1168638 0.00 0.00 0.00 3.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG30345,I_chr2R_5036518_5036570,I_chr2R_5037343_5037395 chr2R + chr2R_5036504_5037191 chr2R_5036504_5036570 chr2R_5036418_5036503;chr2R_5037192_5037342 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA 75.00 NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD I_chr3R_23069667_23070365,CG5987 chr3R - chr3R_23074201_23074263 chr3R_23074201_23074259 chr3R_23074073_23074200;chr3R_23074264_23074804 3.98 NA 4.17 4.50 NA NA NA 4.17 4.55 NA NA NA NA NA NA 3.80 NA NA NA 2.70 NA 3.70 0.00 NA NA NA 9.52 NA 3.45 6.06 NA 5.00 1.79 NA 0.00 NA 0.00 NA 11.11 4.26 2.94 5.56 NA NA 5.00 0.00 6.67 2.13 2.33 11.11 NA NA NA 0.00 0.00 2.63 6.67 4.44 K intron_retention CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2461269_2463056 chr3L_2461268_2461269;chr3L_2463056_2463057 chr3L_2461146_2461268;chr3L_2463057_2464583 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 K intron_retention CG6765,CG6776,se chr3L + chr3L_8510359_8510415 chr3L_8510358_8510359;chr3L_8510415_8510416 chr3L_8510311_8510358;chr3L_8510416_8510517 4.00 NA NA NA NA NA NA NA 4.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor Lnk,RI_chr3R_21714780_21715376 chr3R + chr3R_21714788_21715376;chr3R_21714614_21715376 chr3R_21714419_21715376 chr3R_21715377_21715476;chr3R_21714271_21714418 27.27 29.41 23.81 19.23 27.59 24.14 28.12 17.91 27.78 52.94 16.00 22.22 18.75 22.50 31.58 19.40 20.59 35.14 26.09 37.11 16.00 32.14 36.36 27.27 25.00 24.32 44.44 40.00 42.86 33.33 34.78 34.78 18.18 21.13 17.86 22.58 47.62 43.24 50.00 26.98 17.39 22.54 19.44 38.46 38.89 14.63 47.62 24.49 23.46 25.93 33.85 27.27 50.00 37.50 18.37 40.00 36.00 17.95 K intron_retention CG12863 chr2R - chr2R_10508068_10508122 chr2R_10508067_10508068;chr2R_10508122_10508123 chr2R_10507339_10508067;chr2R_10508123_10508311 0.00 NA NA NA NA NA NA NA 4.17 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 12.50 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 K alternative_acceptor CG31150,Hmt-1 chr3R - chr3R_11674738_11674860 chr3R_11674750_11674860 chr3R_11674861_11675363;chr3R_11674622_11674737 1.07 1.21 1.10 1.86 0.68 1.38 0.93 1.72 0.30 2.88 0.85 1.06 0.70 0.78 0.58 0.00 0.85 0.61 1.49 1.04 1.68 0.68 1.34 1.08 1.11 1.12 1.00 0.98 0.75 0.45 0.00 1.31 1.12 0.85 1.18 2.40 0.75 1.18 0.66 1.37 2.17 1.25 1.63 0.72 0.38 2.01 1.67 0.91 1.27 1.07 1.54 2.17 1.41 1.03 1.20 0.48 0.36 1.07 K intron_retention Unr,DMG4-MB6.chr3L.15.021 chr3L - chr3L_8431156_8431292 chr3L_8431155_8431156;chr3L_8431292_8431293 chr3L_8430608_8431155;chr3L_8431293_8431786 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention l(1)G0269,I_chrX_21192541_21192931 chrX - chrX_21192847_21192931 chrX_21192846_21192847;chrX_21192931_21192932 chrX_21192664_21192846;chrX_21192932_21193031 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA CG1673 chrX + chrX_13294195_13294879 chrX_13294195_13294262 chrX_13294040_13294194;chrX_13294880_13295313 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor MB8.chr3R.pasa.66,CG1091,I_chr3R_2910490_2910662,RI_chr3R_2910490_2910686,RI_chr3R_2911041_2911135,RI_chr3R_2946518_2946663 chr3R - chr3R_2910490_2910686;chr3R_2910490_2910646 chr3R_2910490_2910662 chr3R_2910390_2910489;chr3R_2910687_2910762 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 2.86 0.00 0.00 0.00 4.55 6.25 0.00 0.00 3.57 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor par-1,I_chr2R_15359242_15360944,I_chr2R_15359251_15360944,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15360670_15360944 chr2R_15360685_15360944 chr2R_15360945_15360953;chr2R_15360501_15360669 16.76 18.46 14.88 17.26 20.59 13.67 16.00 12.63 16.46 16.78 19.54 16.73 17.31 14.53 12.94 16.41 19.30 15.74 16.16 13.01 14.95 13.64 18.75 18.53 20.23 15.74 16.26 21.09 16.38 15.65 19.13 15.75 13.51 16.81 17.90 14.16 18.90 17.77 16.62 17.34 16.08 15.33 17.09 22.94 10.38 18.97 18.10 9.88 14.75 18.52 17.11 17.05 14.86 16.76 20.15 18.18 20.00 16.97 K alternative_donor Chc,RI_chrX_15728405_15729273,I_chrX_15728405_15729401,I_chrX_15728946_15729357 chrX - chrX_15728405_15729260;chrX_15728405_15729476;chrX_15728405_15729357;chrX_15728405_15729319 chrX_15728405_15729370 chrX_15728305_15728404;chrX_15729477_15729501 0.00 0.00 1.52 2.68 0.00 0.00 2.19 0.62 1.90 0.00 0.00 2.31 0.00 1.30 1.67 2.38 4.55 4.35 1.08 1.57 2.17 2.00 1.54 0.00 0.00 6.56 0.00 0.00 4.17 0.00 1.11 0.00 0.00 1.95 2.22 2.22 0.00 0.00 0.00 1.61 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 3.09 0.00 0.00 0.00 0.00 7.14 4.00 0.00 0.00 0.00 K intron_retention CG42574,RI_chr3R_627714_636393,Hus1-like,RI_chr3R_634997_636393,I_chr3R_636510_637704 chr3R - chr3R_634997_637704 chr3R_634996_634997;chr3R_637704_637705 chr3R_634897_634996;chr3R_637705_637730 9.09 NA 7.69 NA NA 0.00 35.71 16.67 14.29 NA NA 7.32 0.00 0.00 0.00 6.25 18.75 14.29 13.79 6.72 9.09 29.41 20.00 25.00 NA NA 12.50 8.70 26.67 20.00 4.17 NA 35.71 4.35 6.67 10.53 6.67 NA 28.57 9.76 NA 9.09 5.00 9.52 0.00 9.09 0.00 9.68 4.44 NA 11.76 5.26 NA NA 4.35 11.76 NA NA K alternative_donor Msp-300,I_chr2L_5197634_5197866 chr2L + chr2L_5196285_5197866 chr2L_5197634_5197866 chr2L_5197867_5197966;chr2L_5195979_5196284 0.00 0.00 0.00 1.01 0.00 0.00 0.97 0.93 0.38 0.00 1.15 0.60 0.00 0.00 1.19 1.39 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 1.27 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 2.70 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention sxc,I_chr2R_1203985_1205289,I_chr2R_1208121_1213310,I_chr2R_1213177_1213308 chr2R + chr2R_1194919_1194977 chr2R_1194918_1194919;chr2R_1194977_1194978 chr2R_1194912_1194918;chr2R_1194978_1195157 100.00 100.00 100.00 61.29 100.00 100.00 100.00 82.61 80.00 100.00 100.00 75.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 72.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 86.27 100.00 76.32 100.00 NA NA 100.00 100.00 100.00 100.00 K intron_retention ics chr2L - chr2L_13640482_13641109 chr2L_13640481_13640482;chr2L_13641109_13641110 chr2L_13639860_13640481;chr2L_13641110_13641230 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.05 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette DppIII,CG7352 chr3R + chr3R_4170206_4170814 chr3R_4170206_4170512;chr3R_4170746_4170814 chr3R_4170513_4170745 chr3R_4170198_4170205;chr3R_4170815_4171121 42.31 41.94 28.07 38.98 36.84 40.68 49.49 39.05 42.31 41.67 53.85 41.67 60.00 44.44 36.99 32.53 33.33 54.17 29.41 63.04 54.05 41.67 40.26 53.85 28.57 14.67 65.57 55.13 36.84 48.78 39.44 58.06 53.70 37.38 42.00 42.22 46.27 47.17 58.00 50.00 44.44 34.51 30.00 45.28 50.00 48.98 43.90 45.16 28.15 43.18 61.11 38.60 40.74 54.29 38.03 36.67 55.26 48.89 N alternative_acceptor I_chr3L_9481026_9484943,noncoding_11665 chr3L + chr3L_9481349_9481457;chr3L_9481349_9484943 chr3L_9481349_9481415 chr3L_9481282_9481348;chr3L_9484944_9485043 33.33 33.33 NA NA NA 0.00 NA 50.00 NA NA 100.00 NA NA NA NA 0.00 NA 100.00 NA NA 0.00 33.33 NA NA NA NA NA NA NA 33.33 25.00 33.33 NA NA NA NA NA 33.33 NA 50.00 NA NA NA 33.33 NA NA 33.33 33.33 NA 0.00 33.33 NA 33.33 NA NA NA 33.33 NA K intron_retention Ate1 chr2R - chr2R_16144630_16144702 chr2R_16144629_16144630;chr2R_16144702_16144703 chr2R_16144403_16144629;chr2R_16144703_16144867 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 3.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20825513_20825658 chr2L_20825512_20825513;chr2L_20825658_20825659 chr2L_20825471_20825512;chr2L_20825659_20825758 98.21 95.74 98.33 98.15 96.67 98.21 98.57 98.53 97.80 98.55 92.00 100.00 97.56 98.11 95.08 96.94 100.00 98.04 97.92 99.36 97.67 99.31 98.79 99.25 100.00 96.77 97.92 97.71 99.22 98.61 97.33 97.22 97.85 96.08 98.98 99.18 98.23 98.08 98.44 96.88 97.78 98.97 96.97 98.95 98.85 98.32 99.07 99.02 99.03 97.44 98.59 98.44 96.43 97.76 98.44 96.40 96.94 98.51 K alternative_acceptor CG3797,I_chr3L_19054399_19054486 chr3L - chr3L_19054399_19054486 chr3L_19054431_19054486 chr3L_19054487_19054586;chr3L_19054299_19054398 100.00 100.00 100.00 97.73 100.00 100.00 100.00 97.56 97.44 91.67 95.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 95.83 100.00 97.56 100.00 97.62 100.00 96.00 100.00 88.89 96.00 100.00 97.44 95.00 100.00 95.24 100.00 95.00 100.00 95.65 92.86 NA K intron_retention casp,EI_chr2R_11914764_11914841 chr2R - chr2R_11914562_11914639 chr2R_11914561_11914562;chr2R_11914639_11914640 chr2R_11914372_11914561;chr2R_11914640_11914763 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.21 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG16892 chrX + chrX_9168290_9168346 chrX_9168289_9168290;chrX_9168346_9168347 chrX_9168005_9168289;chrX_9168347_9168723 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.89 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 4.00 8.82 0.00 0.00 6.67 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.76 10.26 0.00 6.90 0.00 8.70 0.00 7.69 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Actn chrX - chrX_1921496_1921553 chrX_1921495_1921496;chrX_1921553_1921554 chrX_1921317_1921495;chrX_1921554_1921904 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG13568,I_chr2R_19941242_19941302 chr2R - chr2R_19941242_19941312 chr2R_19941241_19941242;chr2R_19941312_19941313 chr2R_19941202_19941241;chr2R_19941313_19941402 38.46 NA NA NA NA NA NA NA 50.00 NA NA 60.00 NA NA NA NA NA NA NA 52.17 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA 38.46 NA NA NA 36.36 NA 27.27 NA K cassette unk,I_chr3R_18980963_18981530 chr3R - chr3R_18980963_18981530 chr3R_18980963_18981161;chr3R_18981272_18981530 chr3R_18981162_18981271 chr3R_18980935_18980962;chr3R_18981531_18981630 100.00 100.00 NA 33.33 NA 83.33 NA 100.00 100.00 NA NA 90.00 100.00 NA NA 100.00 NA NA 100.00 95.00 NA 94.74 100.00 NA NA NA 100.00 100.00 NA 100.00 85.71 NA 93.75 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA K alternative_acceptor Pak,RI_chr3R_2181143_2181934 chr3R + chr3R_2183063_2184004 chr3R_2183063_2183596 chr3R_2182472_2183062;chr3R_2184005_2184744 5.19 4.49 4.88 9.17 2.99 4.00 10.40 4.55 2.62 8.70 1.23 5.26 3.51 4.55 4.88 6.32 2.94 2.38 4.29 5.20 3.66 11.49 7.43 5.08 13.25 30.77 8.82 9.57 9.68 6.38 2.53 10.00 7.69 4.80 5.19 15.79 5.70 5.00 7.69 6.06 11.11 3.38 4.26 6.98 4.17 7.14 4.88 6.67 3.25 6.52 3.73 5.06 4.72 4.17 5.77 5.88 3.61 6.19 K intron_retention Uhg3,noncoding_4006,E_chr2L_20647810_20648188,R_chr2L_20648002_20648194,snoRNA:Me28S-C2645c chr2L + chr2L_20648249_20648419 chr2L_20648248_20648249;chr2L_20648419_20648420 chr2L_20648195_20648248;chr2L_20648420_20648464 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.92 NA 0.00 0.00 2.94 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.85 NA 0.00 0.00 0.00 3.23 0.00 0.00 8.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 5.26 0.00 K intron_retention dor,hfw chrX + chrX_1561646_1561706 chrX_1561645_1561646;chrX_1561706_1561707 chrX_1560220_1561645;chrX_1561707_1561858 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.82 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 1.59 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6501632_6502058;chr2R_6501632_6502037 chr2R_6501632_6502052 chr2R_6501448_6501631;chr2R_6502059_6503753 5.32 3.53 6.86 8.66 6.06 2.44 13.21 5.88 9.38 7.62 4.60 6.58 7.53 4.85 8.03 3.41 5.68 2.00 4.11 8.55 4.60 5.43 5.18 6.49 7.26 12.50 4.62 5.88 2.96 4.05 5.88 4.29 9.20 3.70 4.35 5.78 4.74 4.65 2.85 4.56 7.81 6.06 6.82 4.11 8.70 2.91 0.88 1.96 4.52 5.88 5.80 3.45 3.80 5.32 5.04 4.31 7.81 7.02 K alternative_donor CG5445,I_chrX_17198393_17198730 chrX + chrX_17198393_17198730 chrX_17198404_17198730 chrX_17198731_17198830;chrX_17198293_17198392 100.00 100.00 100.00 100.00 95.00 100.00 100.00 94.74 97.83 100.00 100.00 96.97 100.00 100.00 100.00 100.00 91.67 100.00 100.00 97.62 90.91 100.00 97.83 97.50 95.65 100.00 97.14 96.97 96.43 100.00 100.00 100.00 92.86 95.24 100.00 100.00 97.92 97.06 100.00 96.00 100.00 97.56 NA 100.00 95.83 100.00 100.00 100.00 96.15 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 93.33 K alternative_acceptor Psi,RI_chr2R_12752536_12752596,I_chr2R_12753387_12753659 chr2R - chr2R_12752539_12752596;chr2R_12752542_12752596 chr2R_12752536_12752596 chr2R_12752597_12752696;chr2R_12752436_12752535 4.35 0.00 8.33 5.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 11.11 0.00 9.09 0.00 0.00 0.00 5.26 8.33 11.76 6.67 20.00 NA 7.14 7.14 0.00 7.14 4.17 0.00 0.00 3.33 5.26 NA 7.14 5.00 0.00 0.00 4.35 8.33 10.34 10.00 5.26 0.00 0.00 7.14 0.00 4.76 0.00 9.09 0.00 18.75 0.00 5.56 9.09 0.00 5.26 K alternative_donor Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3295176;chr2R_3294566_3295244;chr2R_3294566_3294634;chr2R_3294566_3294638;chr2R_3294566_3295280;chr2R_3294566_3294642;chr2R_3294566_3294714 chr2R_3294566_3294636 chr2R_3294491_3294565;chr2R_3295281_3295302 10.00 0.00 10.53 9.38 9.09 0.00 13.04 8.70 5.41 12.50 12.50 6.06 7.69 0.00 11.11 12.50 16.67 20.00 11.11 4.88 12.50 12.50 9.52 0.00 0.00 14.29 5.56 12.50 11.76 11.76 12.50 0.00 8.00 12.00 23.08 10.53 0.00 8.33 9.09 10.71 25.00 11.54 7.14 13.33 11.76 18.75 0.00 17.39 6.45 7.69 10.00 0.00 14.29 0.00 4.55 0.00 12.50 7.69 K intron_retention SC35,I_chr2L_12432061_12432121,I_chr2L_12432222_12432308 chr2L - chr2L_12432205_12432308 chr2L_12432204_12432205;chr2L_12432308_12432309 chr2L_12432122_12432204;chr2L_12432309_12432408 0.00 0.00 0.00 1.50 0.00 0.00 0.00 2.44 0.39 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.78 0.00 0.88 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 1.09 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 K alternative_donor Mlh1,I_chr2R_4058619_4058671 chr2R + chr2R_4058615_4058671 chr2R_4058619_4058671 chr2R_4058672_4058771;chr2R_4058519_4058614 4.35 8.33 9.09 3.57 0.00 5.00 4.35 2.56 3.57 0.00 0.00 2.17 0.00 3.85 2.94 0.00 0.00 6.67 0.00 3.39 0.00 11.11 6.67 0.00 NA 7.69 7.41 0.00 7.41 4.55 11.76 3.23 6.25 4.17 5.00 6.67 0.00 4.17 0.00 4.88 9.09 2.63 5.56 4.76 3.85 3.45 4.35 7.14 9.30 5.26 3.85 4.35 6.67 5.26 5.00 5.00 7.14 4.44 K intron_retention Csp,RI_chr3L_22262215_22262452,I_chr3L_22264863_22266536,I_chr3L_22273037_22275661 chr3L + chr3L_22263021_22264657 chr3L_22263020_22263021;chr3L_22264657_22264658 chr3L_22262889_22263020;chr3L_22264658_22264862 14.29 14.81 11.11 28.57 17.86 10.00 25.00 17.50 17.95 19.15 16.28 22.37 20.00 18.75 17.31 11.11 15.62 14.58 15.15 13.25 8.51 11.11 8.70 11.39 9.09 13.79 13.64 25.49 14.29 10.98 8.89 21.67 14.67 12.96 11.43 4.94 7.78 9.09 13.79 12.09 16.05 13.95 24.24 11.67 18.06 9.46 14.08 10.68 16.88 23.08 10.71 16.22 16.95 14.29 13.64 12.50 19.44 15.38 K alternative_acceptor bves chrX + chrX_20925770_20931521 chrX_20925770_20931518 chrX_20925764_20925769;chrX_20931522_20932584 41.11 36.36 NA 45.45 NA NA NA 50.00 37.50 NA NA NA NA NA NA NA NA NA NA 38.46 NA NA NA NA NA NA NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA 36.36 43.75 NA 66.67 NA NA NA NA 36.36 NA 50.00 NA NA NA 45.45 NA NA NA K intron_retention l(2)03709,I_chr2R_14707617_14707700,I_chr2R_14708048_14708095 chr2R + chr2R_14708344_14708545 chr2R_14708343_14708344;chr2R_14708545_14708546 chr2R_14708110_14708343;chr2R_14708546_14708623 0.00 0.00 0.00 0.00 0.00 1.18 0.56 0.60 1.00 0.00 0.37 0.54 0.00 0.00 0.49 0.97 0.00 0.00 0.75 0.50 0.32 0.00 0.00 0.30 0.00 0.00 2.74 4.15 0.36 0.00 1.12 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.63 0.00 0.57 0.00 0.00 0.58 0.33 0.31 0.00 K jcn_only_AD CG8678,RI_chr2L_21213167_21213218,RI_chr2L_21213167_21213227 chr2L - chr2L_21213167_21213227 chr2L_21213167_21213222 chr2L_21213067_21213166;chr2L_21213228_21213318 96.04 98.73 93.10 97.25 90.20 91.49 98.02 96.40 95.76 95.77 97.73 94.87 95.45 98.04 93.75 97.53 96.72 91.94 97.44 93.46 96.00 94.51 97.83 97.37 95.38 94.74 97.14 93.33 96.04 94.44 95.31 98.15 94.12 92.86 98.44 98.08 93.55 91.25 98.20 97.92 96.43 96.18 90.70 97.14 93.18 95.06 97.06 97.06 93.46 94.12 96.85 100.00 96.30 93.44 97.33 98.81 93.75 100.00 K alternative_acceptor His2Av chr3R + chr3R_22693505_22694146 chr3R_22693505_22694077 chr3R_22693391_22693504;chr3R_22694147_22694408 100.00 100.00 100.00 100.00 100.00 100.00 99.73 100.00 99.89 100.00 100.00 99.88 100.00 100.00 99.76 100.00 100.00 100.00 100.00 99.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.72 99.76 99.69 100.00 99.83 99.82 100.00 100.00 100.00 100.00 100.00 99.85 100.00 99.88 100.00 100.00 100.00 100.00 99.82 100.00 99.73 100.00 100.00 99.64 100.00 100.00 100.00 100.00 100.00 99.82 K jcn_only_AD CG14057,EI_chr3L_17037760_17037808 chr3L - chr3L_17037760_17037812 chr3L_17037760_17037808 chr3L_17037660_17037759;chr3L_17037813_17037908 0.00 0.00 0.00 0.88 0.00 1.35 0.57 0.00 0.99 1.77 2.70 0.00 0.00 1.64 0.00 1.01 0.00 0.00 0.00 0.96 1.05 0.00 0.00 0.67 2.47 0.00 0.75 1.20 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.74 0.00 0.00 0.90 0.00 0.00 0.00 0.64 0.39 0.00 K intron_retention Surf1 chr3L + chr3L_6951927_6951988 chr3L_6951926_6951927;chr3L_6951988_6951989 chr3L_6951805_6951926;chr3L_6951989_6952183 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 2.56 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 3.33 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG32758 chrX - chrX_5615236_5615299 chrX_5615236_5615294 chrX_5613769_5615235;chrX_5615300_5615729 61.36 64.00 76.47 93.33 66.67 85.71 58.82 53.85 61.36 63.16 68.75 66.67 50.00 58.33 48.15 68.75 68.42 26.32 50.00 61.36 63.16 41.67 55.56 56.00 63.16 53.85 63.16 33.33 54.17 61.90 53.33 69.57 75.36 75.86 60.71 60.61 57.14 77.78 53.33 54.05 66.67 63.16 53.85 37.50 85.19 52.17 41.38 63.33 59.38 64.71 62.50 60.00 57.14 52.63 55.00 63.16 64.00 78.12 K cassette CG5594,CG2812 chr2R + chr2R_19810553_19811938 chr2R_19810553_19811524;chr2R_19811618_19811938 chr2R_19811525_19811617 chr2R_19810445_19810552;chr2R_19811939_19812072 98.84 100.00 100.00 100.00 98.08 97.96 96.83 100.00 98.22 95.83 98.39 99.07 88.57 98.51 100.00 99.18 98.41 100.00 98.81 99.34 98.39 95.00 99.05 98.91 94.44 93.33 98.80 96.97 80.95 100.00 100.00 100.00 100.00 99.11 98.21 93.75 98.55 100.00 100.00 95.00 92.31 99.21 100.00 100.00 97.22 100.00 100.00 95.65 99.03 99.13 99.26 98.51 98.15 100.00 98.59 98.84 99.22 96.88 K alternative_donor MED14,CG12030 chr3L + chr3L_594846_594915 chr3L_594852_594915 chr3L_594916_595283;chr3L_594354_594845 0.00 2.56 0.00 2.27 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 4.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 5.71 0.00 0.00 2.63 2.70 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K alternative_donor ZnT63C chr3L + chr3L_3303853_3304601;chr3L_3304022_3304601 chr3L_3303837_3304601 chr3L_3304602_3304665;chr3L_3303742_3303836 8.05 4.92 9.52 3.95 11.29 3.90 8.14 8.65 9.15 5.26 6.06 5.41 8.16 5.80 3.75 3.20 6.67 13.04 2.67 8.76 6.90 15.79 10.09 10.71 5.26 5.00 10.14 10.00 1.19 1.64 9.79 9.30 1.89 9.02 8.05 3.23 13.95 8.06 8.62 4.32 8.20 6.00 8.20 9.18 20.00 7.61 9.23 2.08 6.21 8.62 7.96 6.32 8.70 5.13 4.17 8.70 14.55 2.20 K jcn_only_AD LIMK1,I_chrX_12488942_12489000 chrX - chrX_12484518_12486000;chrX_12484518_12485963 chrX_12484518_12486079 chrX_12483874_12484517;chrX_12486080_12486162 1.79 1.96 0.00 1.19 0.00 6.25 1.47 2.06 5.56 0.00 1.85 1.09 6.25 5.88 1.56 3.23 0.00 1.72 2.00 3.88 6.98 22.78 0.00 0.00 6.45 0.00 1.75 0.00 1.27 0.00 1.28 0.00 3.12 0.98 0.00 1.82 3.95 3.85 1.61 1.92 3.70 8.57 8.11 3.39 0.00 2.78 6.06 3.97 3.06 NA 1.22 0.00 NA NA 1.64 3.33 0.00 0.00 K multi_cassette CG2316,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_210055,I_chr4_209875_210628,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_211303,RI_chr4_210688_211927,I_chr4_210688_213991,I_chr4_210688_214019,I_chr4_210688_214049,RI_chr4_210688_214450 chr4 - chr4_208796_210623 chr4_208796_208855;chr4_208996_209050;chr4_209150_209203;chr4_209369_210623 chr4_208856_208995;chr4_209051_209149;chr4_209204_209368 chr4_208696_208795;chr4_210624_210636 100.00 100.00 100.00 100.00 95.65 100.00 98.08 100.00 100.00 100.00 100.00 98.28 100.00 100.00 100.00 98.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD pAbp,I_chr2R_14027838_14028996 chr2R + chr2R_14028464_14028996;chr2R_14028922_14028996 chr2R_14028460_14028996 chr2R_14028997_14029096;chr2R_14028264_14028459 23.73 NA NA 20.00 NA NA NA 24.39 40.00 NA NA 28.57 NA NA NA 38.46 NA NA NA 37.50 NA 17.65 16.00 NA NA NA 37.93 20.00 23.08 NA NA NA 33.33 17.39 NA NA 8.82 NA NA 15.38 NA 27.27 NA 37.93 NA NA NA NA NA NA NA NA NA NA NA NA 4.76 NA K intron_retention CG30497,I_chr2R_3629384_3665979,I_chr2R_3629426_3629937,I_chr2R_3629426_3632725,I_chr2R_3629426_3641014,I_chr2R_3629426_3669231,I_chr2R_3641074_3645539,I_chr2R_3641074_3665979 chr2R - chr2R_3629426_3665979 chr2R_3629425_3629426;chr2R_3665979_3665980 chr2R_3629326_3629425;chr2R_3665980_3666079 7.69 9.84 15.69 10.94 9.26 7.69 8.93 9.38 9.43 3.39 4.44 10.78 5.71 9.62 9.52 10.87 8.70 4.88 10.26 4.65 6.67 13.25 10.28 13.85 5.00 16.67 9.72 10.14 8.00 9.09 8.00 0.00 6.02 11.84 18.75 6.56 4.49 5.33 6.84 6.49 0.00 7.84 10.53 5.63 0.00 0.00 2.94 5.88 8.14 0.00 8.75 6.52 2.38 7.41 7.55 0.00 2.94 0.00 K intron_retention mura,I_chr3R_5373093_5375309,I_chr3R_5373093_5375380,I_chr3R_5373093_5376618,RI_chr3R_5373093_5377292,CR42549,noncoding_15610,I_chr3R_5375533_5376618,RI_chr3R_5380786_5380850 chr3R - chr3R_5373093_5377487 chr3R_5373092_5373093;chr3R_5377487_5377488 chr3R_5373086_5373092;chr3R_5377488_5377520 12.50 NA NA 12.50 NA NA 35.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor sax,CG1882 chr2R + chr2R_3700197_3700785;chr2R_3700238_3700785 chr2R_3700498_3700785 chr2R_3700786_3702250;chr2R_3700011_3700196 90.48 89.86 92.06 90.91 93.48 82.14 92.48 92.47 88.39 91.67 95.65 92.31 84.62 91.49 86.76 86.11 91.89 84.31 85.96 88.08 92.86 77.84 92.81 87.70 88.57 91.53 87.58 95.40 91.82 93.68 83.17 91.43 93.22 94.87 88.61 92.38 91.94 88.17 88.81 92.86 86.60 88.39 90.24 93.10 88.46 86.89 93.94 91.59 86.24 89.00 88.39 87.32 94.34 89.33 90.77 90.48 89.58 91.14 K alternative_acceptor Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11837971_11838662 chr2R_11838019_11838662 chr2R_11838663_11838663;chr2R_11837919_11837970 3.10 2.54 3.26 6.25 0.00 2.94 9.88 3.23 5.66 2.50 1.23 3.11 1.61 3.90 2.94 2.88 2.82 3.49 4.55 3.30 1.27 32.07 2.37 2.11 3.45 11.76 2.96 1.92 4.43 2.11 2.26 3.77 3.94 4.35 2.88 3.10 2.90 4.00 2.81 2.30 7.44 3.05 5.26 2.52 3.11 4.27 3.73 2.75 2.52 3.45 3.70 5.81 2.78 4.85 4.95 1.94 1.30 1.72 K jcn_only_AA Gnf1,I_chr3R_749200_749265 chr3R + chr3R_733842_733969 chr3R_733842_733903 chr3R_732511_733841;chr3R_733970_734812 1.06 2.41 1.80 1.06 0.00 0.00 4.35 0.00 0.62 2.13 0.00 0.68 4.55 3.66 0.00 2.16 0.00 2.86 2.33 0.73 0.00 1.72 0.83 0.00 1.75 1.25 0.00 0.00 1.23 0.00 1.47 1.20 1.33 0.00 1.33 1.15 0.00 2.47 1.09 0.83 3.48 1.27 2.67 1.61 1.82 0.00 1.08 0.00 0.75 0.00 0.79 2.82 0.00 0.00 0.00 1.19 0.00 0.00 K jcn_only_AD vlc chr2R + chr2R_1589953_1590371;chr2R_1589894_1590371;chr2R_1589799_1590371;chr2R_1589805_1590371;chr2R_1590318_1590371;chr2R_1589807_1590371;chr2R_1590294_1590371;chr2R_1589722_1590371 chr2R_1589693_1590371 chr2R_1590372_1590451;chr2R_1589612_1589692 4.17 5.45 5.80 5.71 0.00 8.16 3.09 3.17 4.24 11.43 2.22 4.92 2.70 4.05 4.17 1.65 6.38 7.14 4.69 0.00 0.00 2.86 4.17 1.52 4.55 6.67 6.67 3.23 3.33 1.89 7.14 0.00 1.69 5.07 0.00 0.00 5.00 7.02 0.00 2.44 10.00 6.06 5.48 8.45 6.45 3.70 0.00 3.70 5.71 1.79 1.96 1.82 5.26 0.00 3.41 5.00 5.80 4.35 K intron_retention Lag1,RI_chrX_6153758_6161036,I_chrX_6160751_6160887,I_chrX_6160907_6161036 chrX - chrX_6160751_6161036 chrX_6160750_6160751;chrX_6161036_6161037 chrX_6160651_6160750;chrX_6161037_6161136 80.20 82.76 85.21 90.23 82.98 86.32 79.91 85.33 87.50 74.24 87.76 81.78 83.11 81.46 85.94 72.08 82.68 78.76 78.70 83.57 83.65 77.11 79.71 80.87 87.14 61.11 84.00 87.18 66.67 73.53 77.56 80.77 87.17 80.43 80.34 79.25 81.82 79.75 76.71 78.77 81.82 79.92 77.40 69.63 72.97 73.18 78.26 69.83 79.26 78.50 86.00 90.00 72.58 78.67 80.89 72.55 80.20 65.56 K intron_retention TMS1 chr3L + chr3L_16407594_16407893 chr3L_16407593_16407594;chr3L_16407893_16407894 chr3L_16407384_16407593;chr3L_16407894_16408056 1.82 1.72 1.74 2.23 1.72 1.98 4.35 1.32 2.30 3.36 0.98 2.48 1.55 2.42 1.92 3.33 1.04 2.14 2.13 1.42 1.06 1.22 3.66 1.77 1.21 0.40 3.46 2.76 1.61 1.04 1.14 1.45 1.08 1.96 2.14 2.14 1.92 1.27 2.56 2.07 1.82 1.07 2.58 2.60 1.22 1.71 3.28 3.60 1.55 2.88 2.98 1.49 1.49 3.21 2.86 1.27 1.08 1.16 K alternative_acceptor Pcf11,RI_chr2R_10753287_10754988 chr2R - chr2R_10753272_10754988;chr2R_10753557_10754988;chr2R_10753581_10754988;chr2R_10753239_10754988 chr2R_10753287_10754988 chr2R_10754989_10755088;chr2R_10753187_10753238 0.00 0.00 0.00 4.17 0.00 0.00 9.09 0.00 2.86 0.00 0.00 3.57 18.18 0.00 6.67 7.14 6.25 0.00 0.00 2.38 0.00 3.23 0.00 0.00 0.00 0.00 0.00 3.57 5.00 0.00 5.26 0.00 0.00 3.33 0.00 12.50 2.44 0.00 0.00 8.82 16.67 2.94 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 NA 0.00 K alternative_donor inaE chrX + chrX_13678262_13679739;chrX_13678310_13679739 chrX_13678223_13679739 chrX_13679740_13679985;chrX_13677782_13678222 0.00 3.70 0.00 0.00 0.00 4.17 0.00 0.00 1.54 0.00 7.14 0.00 0.00 4.00 0.00 0.00 5.56 0.00 0.00 1.37 0.00 0.00 1.72 0.00 0.00 0.00 3.23 0.00 0.00 0.00 4.35 0.00 0.00 1.85 0.00 0.00 0.00 3.57 5.71 0.00 0.00 1.89 0.00 2.86 6.67 3.03 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 5.00 0.00 0.00 0.00 K alternative_acceptor CG11790,CG11791 chr3R + chr3R_20875669_20876344;chr3R_20875669_20876902 chr3R_20875669_20876354 chr3R_20875600_20875668;chr3R_20876903_20877278 40.54 38.24 46.67 39.06 38.71 46.43 53.85 57.89 28.75 33.33 46.15 57.89 35.14 48.28 44.74 29.41 45.16 32.43 41.86 43.08 48.00 45.65 50.00 40.54 45.83 47.06 44.44 38.46 40.00 42.42 43.90 25.00 27.50 44.83 38.71 68.75 36.59 40.00 39.39 36.71 24.49 57.14 56.00 25.93 42.22 39.66 23.81 45.28 23.73 50.00 37.21 53.85 18.75 41.94 40.43 35.90 33.33 33.80 N multi_cassette CG42348,I_chr3L_20149990_20151579 chr3L - chr3L_20148379_20151579 chr3L_20148379_20148637;chr3L_20148760_20148832;chr3L_20148928_20149000;chr3L_20149099_20151579 chr3L_20148638_20148759;chr3L_20148833_20148927;chr3L_20149001_20149098 chr3L_20148001_20148378;chr3L_20151580_20151679 100.00 100.00 100.00 65.62 100.00 100.00 100.00 100.00 87.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 76.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 82.14 100.00 100.00 86.57 100.00 100.00 88.16 100.00 100.00 100.00 100.00 72.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Spc105R chr3L + chr3L_20799475_20799538 chr3L_20799475_20799533 chr3L_20799025_20799474;chr3L_20799539_20799958 100.00 NA 95.24 97.06 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 100.00 NA 100.00 95.65 NA NA NA 100.00 NA NA 100.00 NA NA NA NA 100.00 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 K cassette Hydr1 chr2R + chr2R_5020034_5021103;chr2R_5020273_5021103;chr2R_5020095_5021103;chr2R_5020492_5021103 chr2R_5020492_5020551,chr2R_5020095_5020551,chr2R_5020034_5020551,chr2R_5020273_5020551;chr2R_5020853_5021103 chr2R_5020552_5020852 chr2R_5020013_5020033;chr2R_5021104_5021275 33.33 32.00 30.43 11.54 26.09 31.82 20.00 11.54 23.21 43.75 52.63 57.14 27.27 29.41 29.17 14.81 16.67 25.00 29.17 16.33 42.11 12.50 32.26 30.56 40.00 36.84 33.33 58.33 33.33 33.33 29.17 50.00 33.33 24.24 36.84 18.18 33.33 44.44 46.43 50.00 60.00 30.23 26.67 41.67 46.67 47.83 41.18 62.50 31.25 53.85 44.44 30.00 40.00 42.11 29.17 40.00 35.29 66.67 N alternative_acceptor CG9934 chr2L - chr2L_13013870_13013948 chr2L_13013884_13013948 chr2L_13013949_13014291;chr2L_13013318_13013869 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 82.05 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention E2f2 chr2L - chr2L_21154580_21154645 chr2L_21154579_21154580;chr2L_21154645_21154646 chr2L_21154432_21154579;chr2L_21154646_21154985 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 NA 0.00 2.38 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 11.11 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 K intron_retention CG8405,I_chr2R_11936911_11936991 chr2R + chr2R_11935784_11935841 chr2R_11935783_11935784;chr2R_11935841_11935842 chr2R_11935637_11935783;chr2R_11935842_11935934 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 9.68 0.00 0.00 0.00 1.37 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2392054 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2389073;chrX_2389272_2389644;chrX_2389762_2392054 chrX_2387584_2387709;chrX_2388437_2388670;chrX_2389074_2389271;chrX_2389645_2389761 chrX_2387149_2387248;chrX_2392055_2392148 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA 66.67 NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention TppII,GLaz chr2R - chr2R_9045782_9046271 chr2R_9045781_9045782;chr2R_9046271_9046272 chr2R_9045525_9045781;chr2R_9046272_9046351 96.36 93.85 96.20 97.14 94.55 94.67 98.72 97.66 97.65 97.14 96.67 97.83 95.52 94.29 98.99 94.62 96.36 96.55 98.88 95.52 97.33 84.00 90.62 94.37 98.08 98.53 98.44 96.55 97.62 90.62 99.07 95.92 73.53 93.46 93.48 100.00 93.42 94.34 96.46 90.00 88.00 97.18 91.80 83.05 94.12 97.44 98.82 83.64 94.66 98.21 96.39 95.35 95.24 96.94 97.67 98.73 99.24 94.55 K alternative_acceptor CCS,I_chr2R_6009946_6010014 chr2R - chr2R_6009946_6010014;chr2R_6009951_6010014 chr2R_6009964_6010014 chr2R_6010015_6010040;chr2R_6009884_6009945 90.24 100.00 85.71 76.92 NA 100.00 90.91 100.00 100.00 100.00 NA 80.00 NA 90.00 NA 83.33 100.00 100.00 80.00 90.48 100.00 80.00 83.33 85.71 100.00 100.00 78.57 85.00 57.14 NA 90.91 85.71 100.00 88.89 100.00 75.00 92.86 87.50 76.92 100.00 NA 93.33 NA 75.00 100.00 92.86 88.89 85.71 92.31 83.33 90.91 100.00 85.71 90.00 81.82 100.00 100.00 87.50 K intron_retention CG42542,I_chr3R_11024452_11024586 chr3R + chr3R_11025433_11027745 chr3R_11025432_11025433;chr3R_11027745_11027746 chr3R_11025292_11025432;chr3R_11027746_11027925 0.00 0.00 0.00 4.84 0.00 0.00 7.02 0.00 1.18 0.00 0.00 2.90 0.00 0.00 0.00 3.70 0.00 0.00 0.00 1.16 0.00 1.59 0.00 3.39 0.00 0.00 2.38 0.00 2.27 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 6.06 0.00 3.85 0.00 0.00 0.00 1.89 4.44 3.77 0.00 3.08 0.00 0.00 0.00 0.00 0.00 7.69 0.00 K jcn_only_AD cnc,I_chr3R_19014852_19016738,I_chr3R_19046366_19046507,I_chr3R_19046619_19047567 chr3R - chr3R_19046366_19046507;chr3R_19046366_19047563 chr3R_19046366_19047567 chr3R_19046266_19046365;chr3R_19047568_19047667 42.95 NA NA 35.00 NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.91 NA NA NA NA NA NA NA NA 45.00 NA 40.91 NA NA NA NA NA NA 55.00 NA NA NA NA NA NA NA NA NA K intron_retention CG7834,I_chr3R_25628402_25628511,I_chr3R_25632049_25632125,RI_chr3R_25658089_25658914 chr3R - chr3R_25628382_25628511 chr3R_25628381_25628382;chr3R_25628511_25628512 chr3R_25628302_25628381;chr3R_25628512_25628565 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 2.49 1.15 0.00 0.00 0.00 2.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 1.15 0.49 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.72 0.51 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mus210,RI_chr2R_11200323_11202068,RI_chr2R_11200323_11202128,chr2R_11200326_11200570.0,chr2R_11200670_11201286.0 chr2R + chr2R_11200323_11202068 chr2R_11200322_11200323;chr2R_11202068_11202069 chr2R_11200223_11200322;chr2R_11202069_11202122 77.78 90.00 100.00 87.50 NA 100.00 66.67 75.00 76.92 NA 100.00 80.00 93.75 91.67 86.67 71.43 70.00 NA 100.00 94.12 87.50 26.67 85.00 71.43 56.25 70.59 86.36 96.30 63.64 75.00 90.00 NA 55.88 92.86 69.23 44.12 66.67 76.92 70.83 69.57 67.86 80.95 NA NA NA 69.23 73.33 63.64 77.78 83.33 80.00 NA NA 72.73 90.91 100.00 NA 90.00 K alternative_donor CG32529 chrX + chrX_19781447_19793044 chrX_19781526_19793044 chrX_19793045_19793075;chrX_19781430_19781446 23.13 NA 14.29 23.81 NA 25.00 23.53 33.33 16.28 NA NA 17.24 22.22 21.05 15.38 22.73 NA 14.29 33.33 19.35 NA 22.22 8.33 6.67 NA 18.18 NA NA NA 35.71 18.75 NA 66.67 27.27 NA 26.09 NA NA NA 25.00 NA 31.82 NA 26.67 NA NA NA 72.73 30.00 NA 8.70 12.50 NA NA 30.77 NA NA 71.43 K intron_retention Pmm45A,E_chr2R_4995124_4996987 chr2R - chr2R_4996678_4996738 chr2R_4996677_4996678;chr2R_4996738_4996739 chr2R_4996576_4996677;chr2R_4996739_4997194 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG12030,Rev1 chr3L + chr3L_656833_656897 chr3L_656832_656833;chr3L_656897_656898 chr3L_656779_656832;chr3L_656898_657585 2.17 2.17 5.00 1.69 4.26 5.26 8.08 4.76 4.07 0.00 2.17 5.38 9.76 12.50 4.41 3.60 2.27 3.77 5.88 3.76 4.17 2.56 1.37 0.00 0.00 1.67 8.70 6.45 0.00 0.00 3.03 0.00 0.00 5.71 0.00 0.00 0.00 2.22 0.00 1.49 0.00 3.60 6.67 2.38 0.00 0.00 0.00 0.00 6.19 0.00 3.33 0.00 0.00 0.00 2.60 0.00 0.00 0.00 K intron_retention I_chr2L_11009331_11009442,dUTPase,I_chr2L_11011380_11011453 chr2L + chr2L_11011419_11011479 chr2L_11011418_11011419;chr2L_11011479_11011480 chr2L_11011335_11011418;chr2L_11011480_11011553 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.70 100.00 100.00 100.00 100.00 100.00 100.00 99.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.65 100.00 100.00 100.00 100.00 100.00 98.55 100.00 100.00 100.00 100.00 99.14 100.00 100.00 100.00 99.48 98.73 K alternative_donor Spc25,Cyp304a1 chr3R + chr3R_8787965_8788438 chr3R_8787977_8788438 chr3R_8788439_8788970;chr3R_8787748_8787964 3.30 0.00 4.88 3.26 0.00 6.67 5.88 2.90 3.30 0.00 0.00 4.84 8.16 4.44 2.13 3.03 0.00 2.44 5.36 3.85 0.00 2.27 0.00 3.77 3.45 3.92 4.65 0.00 11.43 4.76 5.26 3.85 0.00 1.45 4.76 5.13 0.00 0.00 0.00 5.26 5.26 3.80 8.33 0.00 0.00 3.03 1.69 0.00 2.99 3.77 3.51 9.09 6.67 3.57 2.27 2.44 0.00 3.77 K intron_retention Rpt3R chr3R - chr3R_5581294_5581341 chr3R_5581293_5581294;chr3R_5581341_5581342 chr3R_5580506_5581293;chr3R_5581342_5581717 13.33 NA NA NA NA NA NA NA 13.33 NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD lin chr2R + chr2R_4802509_4802569;chr2R_4802505_4802569 chr2R_4802513_4802569 chr2R_4802570_4805741;chr2R_4802033_4802504 88.10 92.16 90.70 88.64 88.89 100.00 91.18 86.54 89.13 85.71 88.57 87.64 94.59 89.19 84.31 95.65 80.00 90.62 90.62 87.38 78.26 82.35 88.37 87.67 86.00 91.11 78.67 84.44 86.36 89.39 97.78 85.19 85.56 83.58 92.31 85.29 87.64 84.00 88.14 88.78 88.10 87.78 94.29 83.33 92.00 75.00 86.84 87.63 87.32 83.33 90.41 94.74 95.56 88.10 87.72 94.74 87.88 89.66 K cassette Nipsnap,RI_chrX_15965934_15967435 chrX - chrX_15965934_15967435 chrX_15965934_15967059;chrX_15967134_15967435 chrX_15967060_15967133 chrX_15965834_15965933;chrX_15967436_15967464 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 96.88 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG11790,CG11791 chr3R + chr3R_20876340_20876902;chr3R_20875669_20876902 chr3R_20876091_20876902 chr3R_20876903_20877278;chr3R_20875600_20875668 13.51 20.69 20.37 7.45 17.86 33.33 11.29 13.27 13.04 13.33 11.63 9.57 21.21 18.87 14.63 6.38 20.51 16.00 16.13 11.24 13.64 18.03 12.86 15.15 NA NA 6.38 10.53 5.71 12.77 14.04 12.90 11.76 17.65 2.63 25.00 16.95 11.54 23.91 17.53 17.31 18.82 17.86 13.04 5.80 13.33 19.75 4.84 13.48 4.12 13.11 13.51 12.90 16.33 16.98 13.70 13.73 13.13 K alternative_donor CG10550 chr3R - chr3R_21133632_21134036;chr3R_21133632_21133902 chr3R_21133632_21134032 chr3R_21133411_21133631;chr3R_21134037_21134116 87.50 NA NA 83.33 NA NA 80.00 100.00 87.50 NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 NA K jcn_only_AA CG4747 chr2L + chr2L_10004127_10005423 chr2L_10004127_10004534 chr2L_10003811_10004126 100.00 100.00 100.00 98.86 100.00 100.00 100.00 100.00 100.00 97.67 100.00 98.73 100.00 100.00 100.00 97.94 100.00 100.00 98.57 100.00 97.78 87.10 100.00 100.00 87.50 98.28 98.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 97.56 100.00 99.01 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 98.67 100.00 100.00 100.00 K jcn_only_AA wge chr3R - chr3R_18539117_18539306;chr3R_18539087_18539306 chr3R_18539090_18539306 chr3R_18539307_18539565;chr3R_18538527_18539086 0.65 3.70 1.54 0.93 1.33 0.00 5.21 0.00 0.64 0.00 0.00 0.00 0.00 0.00 1.47 1.75 1.64 1.61 4.35 0.63 0.00 1.61 2.27 3.12 0.00 1.75 7.58 0.00 1.89 0.00 2.50 0.00 0.00 1.02 3.03 0.00 3.49 0.00 2.06 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 3.53 0.00 6.25 0.00 1.47 1.72 1.92 2.17 K intron_retention mfas,I_chr3R_7811954_7812017,RI_chr3R_7818607_7818970 chr3R - chr3R_7815246_7818463 chr3R_7815245_7815246;chr3R_7818463_7818464 chr3R_7814932_7815245;chr3R_7818464_7818574 1.28 1.02 1.85 1.31 1.28 0.00 2.35 1.68 2.20 0.00 1.03 1.26 1.56 1.28 2.34 1.83 3.09 2.13 0.00 1.27 2.83 2.55 0.90 0.00 1.90 0.88 4.55 4.27 1.09 0.00 0.00 0.00 1.04 0.00 1.94 1.64 1.52 0.63 1.90 1.60 0.00 0.69 0.00 1.28 1.61 0.57 1.09 0.00 1.63 1.35 1.95 3.88 0.00 0.00 2.56 2.16 0.57 0.00 K jcn_only_AD scra,EI_chr2R_3480349_3480405 chr2R + chr2R_3480339_3480405 chr2R_3480349_3480405 chr2R_3480406_3480505;chr2R_3480249_3480338 0.40 0.00 0.34 0.67 0.56 0.81 0.47 0.26 0.00 1.43 0.00 0.24 0.49 0.00 1.04 0.00 1.04 0.00 0.44 0.66 0.50 0.36 0.88 0.00 0.00 0.40 0.74 1.46 0.00 0.90 2.17 0.00 0.00 0.24 0.00 0.00 0.00 0.42 0.25 0.59 0.34 0.40 0.00 0.51 0.50 0.31 0.00 0.65 0.44 0.53 0.00 0.66 0.69 0.00 0.66 0.00 0.83 0.56 K alternative_acceptor CG8042,RI_chr3L_7966678_7966749,I_chr3L_7967277_7967400,I_chr3L_7968788_7968857 chr3L - chr3L_7966678_7966749 chr3L_7966684_7966749 chr3L_7966750_7966849;chr3L_7966578_7966677 100.00 100.00 100.00 98.00 100.00 100.00 98.08 100.00 100.00 97.83 96.67 98.46 100.00 100.00 98.04 100.00 100.00 96.88 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 97.73 97.10 99.10 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.41 100.00 100.00 99.07 100.00 100.00 100.00 97.96 98.94 99.00 97.67 99.12 100.00 98.36 97.37 95.83 97.96 100.00 97.78 100.00 100.00 99.45 K jcn_only_AD eIF-3p66,CG16710,CG18754 chr3R + chr3R_19506112_19506233 chr3R_19506173_19506233 chr3R_19506234_19506869;chr3R_19505783_19506111 0.29 0.65 0.00 0.00 0.00 0.40 0.55 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.42 0.00 0.82 1.03 0.00 0.64 0.90 0.00 0.00 0.00 0.36 0.36 0.91 1.27 0.00 0.00 0.47 1.18 0.78 0.31 0.70 0.76 0.43 0.39 0.53 0.27 0.00 0.76 0.00 0.00 0.23 0.82 0.79 0.52 0.44 0.41 0.00 0.00 0.29 0.00 K intron_retention ced-6,I_chr2R_5324717_5324924,I_chr2R_5328640_5328696 chr2R - chr2R_5323798_5323866 chr2R_5323797_5323798;chr2R_5323866_5323867 chr2R_5323556_5323797;chr2R_5323867_5324303 0.00 0.00 0.68 0.18 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.25 0.00 0.00 0.21 0.31 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.20 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 K cassette Trf2,I_chrX_8318346_8318408 chrX + chrX_8304723_8317216 chrX_8304723_8312383;chrX_8312460_8317216 chrX_8312384_8312459 chrX_8304315_8304722;chrX_8317217_8317452 90.00 NA NA 100.00 NA NA 50.00 93.75 100.00 NA NA 88.89 87.50 83.33 NA 92.31 NA 100.00 100.00 90.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA 87.50 91.67 NA NA NA NA NA 85.71 NA 72.73 NA 78.57 NA NA NA 88.89 90.00 NA NA 100.00 NA NA NA NA NA 57.14 K jcn_only_AA Gpo-1,I_chr2R_11747621_11747699,EI_chr2R_11747445_11747699,I_chr2R_11749758_11750187,I_chr2R_11756325_11756380 chr2R - chr2R_11748259_11750187;chr2R_11749758_11750187 chr2R_11748228_11750187 chr2R_11750188_11750219;chr2R_11748106_11748227 1.54 0.00 2.78 0.00 NA 7.69 5.26 0.00 0.00 2.70 0.00 1.32 7.14 3.85 0.00 0.00 0.00 NA 0.00 5.26 0.00 0.00 2.53 4.17 3.12 0.00 1.47 0.00 4.26 0.00 2.44 1.89 3.77 0.00 0.00 0.00 1.41 4.76 2.47 0.00 1.89 4.08 NA 2.15 1.32 1.54 1.28 0.00 0.00 7.14 2.27 1.69 7.41 0.00 6.45 2.38 NA 3.70 K intron_retention CG9855,RI_chr3R_222522_222581,RI_chr3R_222525_222604,I_chr3R_223384_223429 chr3R - chr3R_222525_222581 chr3R_222524_222525;chr3R_222581_222582 chr3R_222457_222524;chr3R_222582_222650 10.00 14.00 5.26 13.33 6.45 22.50 7.27 9.38 14.29 9.30 12.50 9.52 6.67 17.39 16.67 10.91 12.00 5.56 9.52 12.16 12.12 8.05 6.35 13.56 10.00 0.00 14.71 16.22 10.84 6.56 20.41 9.52 7.04 12.07 8.33 6.12 10.53 8.00 6.35 9.28 10.47 5.75 10.81 7.55 18.42 12.90 20.00 9.77 13.75 11.11 7.27 9.52 13.11 10.00 3.77 6.35 13.64 11.72 K jcn_only_AD CG42630,mtTFB1,F_chr3L_11702436_11702598 chr3L + chr3L_11702459_11702598 chr3L_11702536_11702598 chr3L_11702599_11702698;chr3L_11702030_11702458 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.27 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG31224 chr3R - chr3R_14482908_14484481 chr3R_14482908_14482961 chr3R_14481887_14482907;chr3R_14484482_14485019 4.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor Spf45 chr2L - chr2L_22959810_22959876 chr2L_22959816_22959876 chr2L_22959877_22960833;chr2L_22959612_22959809 98.77 98.11 98.00 98.13 96.00 100.00 96.59 99.16 98.86 96.00 100.00 98.88 97.87 98.11 98.21 98.84 100.00 100.00 98.75 98.72 97.06 100.00 100.00 98.21 98.08 100.00 98.84 100.00 98.61 97.78 98.86 98.59 98.59 99.16 98.31 98.21 93.75 97.50 100.00 98.99 99.07 99.02 98.00 100.00 100.00 99.30 98.11 99.20 99.22 98.77 100.00 97.62 100.00 98.00 98.80 98.39 98.78 97.73 K jcn_only_AA SelR,I_chr3R_6692461_6692530,I_chr3R_6694098_6694160 chr3R - chr3R_6692683_6694160;chr3R_6694060_6694160 chr3R_6692717_6694160 chr3R_6694161_6694260 0.00 0.00 0.00 0.00 2.78 0.00 0.00 1.96 0.00 NA 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 1.85 3.45 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.85 NA 0.00 0.00 0.00 NA 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG4572,FI_chr3R_15689914_15690042 chr3R - chr3R_15689914_15690042;chr3R_15689914_15690046 chr3R_15689914_15689997 chr3R_15689814_15689913;chr3R_15690047_15690114 5.66 8.89 7.14 7.00 3.85 5.45 5.93 4.35 5.43 5.56 5.00 8.42 3.03 7.27 9.20 7.50 4.48 8.51 3.85 3.76 5.88 12.00 5.80 0.00 6.98 11.11 12.73 0.00 11.76 5.56 5.26 0.00 4.76 5.88 0.00 NA 6.25 3.85 1.67 5.66 NA 5.26 9.09 4.92 7.69 3.45 8.70 5.26 9.02 5.36 9.38 3.12 14.81 6.67 3.70 2.70 6.25 10.71 K alternative_donor alpha-Man-I,I_chrX_10218352_10219759,I_chrX_10218390_10219759 chrX - chrX_10218352_10219846;chrX_10218352_10219816;chrX_10218352_10219918;chrX_10218352_10219665;chrX_10218352_10219823;chrX_10218352_10219708 chrX_10218352_10219759 chrX_10218290_10218351;chrX_10219919_10219979 14.29 28.57 16.67 15.38 16.67 22.22 20.00 5.88 10.53 0.00 20.00 15.00 NA 11.11 12.50 19.05 16.67 16.67 25.00 7.14 16.67 11.11 0.00 14.29 14.29 14.29 25.00 NA NA 11.11 14.29 NA 14.29 8.33 NA 16.67 16.67 14.29 NA 12.50 16.67 7.69 12.50 16.67 NA 0.00 NA 11.11 6.67 0.00 10.00 12.50 20.00 NA 22.22 50.00 20.00 16.67 K intron_retention CG13602,I_chr3R_19753657_19753715 chr3R - chr3R_19754502_19754558 chr3R_19754501_19754502;chr3R_19754558_19754559 chr3R_19754416_19754501;chr3R_19754559_19754569 43.75 NA NA 90.00 NA NA NA 35.71 NA NA NA NA NA NA NA NA NA NA NA 43.75 NA NA NA NA NA NA 45.45 NA NA NA 39.02 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG8312 chr3R + chr3R_5417908_5447240 chr3R_5417908_5433634;chr3R_5433701_5447240 chr3R_5433635_5433700 chr3R_5417040_5417907;chr3R_5447241_5448139 90.00 NA NA NA NA NA 77.78 75.00 75.00 NA 100.00 100.00 NA NA NA NA NA NA NA 100.00 85.71 NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 90.00 NA NA NA NA NA 87.50 NA 84.62 NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA K intron_retention Ntf-2,RI_chrX_20906749_20906857,I_chrX_20906749_20909772 chrX + chrX_20906749_20906857 chrX_20906748_20906749;chrX_20906857_20906858 chrX_20906649_20906748;chrX_20906858_20906957 66.67 80.00 NA 75.00 NA NA 66.67 69.23 66.67 NA NA 60.00 NA NA 75.00 75.00 NA NA NA 61.11 NA 65.00 NA NA NA NA 69.23 58.82 76.47 NA 65.00 38.10 73.91 58.33 NA 53.85 60.00 63.64 66.67 68.42 54.55 81.25 NA 66.67 57.69 71.43 63.64 75.00 66.67 57.89 35.71 NA NA NA 90.00 50.00 69.23 94.12 K intron_retention Smr,I_chrX_12625852_12636351,REI_chrX_12635675_12636351 chrX - chrX_12625852_12636351 chrX_12625851_12625852;chrX_12636351_12636352 chrX_12625752_12625851;chrX_12636352_12636441 93.33 95.00 100.00 96.67 83.33 94.74 96.55 97.30 95.29 NA 94.44 92.19 100.00 98.00 92.31 93.22 95.65 95.00 92.68 89.13 93.33 66.67 92.31 93.33 92.31 94.12 100.00 NA 70.59 91.67 87.88 90.91 100.00 95.45 100.00 91.67 93.33 100.00 NA 94.44 94.12 91.11 91.89 75.00 NA 93.75 90.91 85.19 91.18 90.00 100.00 88.89 88.89 NA 96.55 84.62 100.00 85.19 K alternative_acceptor CG9372 chr3L + chr3L_19599769_19599932 chr3L_19599769_19599913 chr3L_19599326_19599768;chr3L_19599933_19600081 0.78 0.72 0.00 1.20 0.00 0.78 0.00 0.65 1.71 0.00 0.00 0.39 0.00 0.70 0.58 0.00 0.00 0.00 1.06 0.76 0.87 0.00 1.83 0.00 1.82 1.72 2.22 NA 0.00 1.61 5.16 2.53 2.04 0.41 1.32 1.52 1.25 1.33 1.30 0.68 0.88 0.00 0.74 0.93 1.08 1.06 0.00 0.75 0.00 1.22 1.28 0.98 0.00 1.74 0.64 0.78 0.91 1.72 K alternative_acceptor ct chrX + chrX_7555172_7556678 chrX_7555172_7556144 chrX_7554996_7555171;chrX_7556679_7557587 1.45 0.00 2.04 1.49 0.00 0.00 0.00 1.72 1.41 0.00 0.00 1.35 2.56 0.00 1.92 5.88 2.38 2.00 0.00 1.03 0.00 8.11 1.89 2.04 2.44 0.00 2.22 2.50 5.00 2.94 3.85 0.00 7.14 1.32 0.00 2.38 0.00 2.08 2.50 1.54 4.35 1.00 2.94 3.39 0.00 4.76 0.00 1.37 1.41 0.00 2.22 0.00 0.00 NA 0.00 0.00 0.00 3.45 K intron_retention vap,RI_chrX_15897976_15899352,I_chrX_15897976_15899654,I_chrX_15898011_15899654,I_chrX_15898427_15899017,RI_chrX_15898427_15899654,RI_chrX_15899237_15899352,I_chrX_15899237_15899654 chrX - chrX_15898120_15898360 chrX_15898119_15898120;chrX_15898360_15898361 chrX_15897748_15898119;chrX_15898361_15898368 0.00 NA 3.23 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.00 NA 2.63 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA 4.35 4.00 0.00 0.00 NA NA NA NA NA 7.32 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 K intron_retention APC4,I_chrX_8978433_8978480,RI_chrX_8980352_8980400 chrX + chrX_8977975_8978031 chrX_8977974_8977975;chrX_8978031_8978032 chrX_8977575_8977974;chrX_8978032_8978202 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 N intron_retention Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19547435_19547916 chr2R_19547434_19547435;chr2R_19547916_19547917 chr2R_19547425_19547434;chr2R_19547917_19547942 100.00 100.00 100.00 81.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 82.35 100.00 100.00 NA 100.00 100.00 100.00 100.00 K intron_retention CG32210 chr3L - chr3L_19538621_19540217 chr3L_19538620_19538621;chr3L_19540217_19540218 chr3L_19538409_19538620;chr3L_19540218_19540329 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon wupA,I_chrX_18000066_18000156 chrX - chrX_18000066_18000713 chrX_18000582_18000713 chrX_17999526_18000065 chrX_18000539_18000581 chrX_18000714_18000846 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 K alternative_acceptor CG32068 chr3L + chr3L_10657269_10657338 chr3L_10657269_10657327 chr3L_10657201_10657268;chr3L_10657339_10657404 100.00 100.00 98.00 100.00 100.00 100.00 98.99 99.05 97.71 100.00 100.00 100.00 100.00 97.96 98.25 100.00 100.00 100.00 98.41 99.09 97.87 100.00 97.62 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 97.83 98.88 95.65 100.00 100.00 100.00 100.00 100.00 100.00 98.88 97.62 100.00 98.11 98.57 100.00 100.00 100.00 98.04 100.00 97.14 100.00 100.00 98.59 100.00 100.00 100.00 K intron_retention CG5674 chr2L + chr2L_17972019_17972262 chr2L_17972018_17972019;chr2L_17972262_17972263 chr2L_17972008_17972018;chr2L_17972263_17974832 72.73 60.00 NA NA NA NA 90.91 90.00 92.86 NA NA 84.62 NA 77.78 NA NA NA NA NA 71.43 83.33 58.82 50.00 NA NA NA 63.64 87.50 53.85 72.73 NA NA 85.71 69.23 NA NA 63.64 NA NA 64.00 NA 72.73 NA NA NA 72.73 NA 53.33 81.25 66.67 73.33 NA NA NA NA NA NA 63.64 K alternative_donor tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563461_565293 chr3R_563461_565232 chr3R_563195_563460;chr3R_565294_565301 14.29 NA NA NA NA NA 8.33 30.00 12.50 NA NA 27.27 NA NA NA NA NA NA 7.69 21.05 NA NA NA NA NA NA NA NA NA NA NA NA NA 27.27 NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA 14.29 NA K cassette shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9758844_9759483 chr2R_9758844_9759170;chr2R_9759231_9759483 chr2R_9759171_9759230 chr2R_9758799_9758843;chr2R_9759484_9759658 84.17 89.38 88.03 90.29 66.36 69.72 45.00 83.65 82.23 78.22 54.84 89.37 84.85 83.81 85.93 87.96 96.36 81.36 89.92 83.41 68.27 96.28 83.33 88.04 89.44 91.74 85.99 75.00 73.88 84.17 90.37 81.01 84.21 81.03 85.32 89.38 86.45 86.14 89.81 82.82 86.76 83.96 79.41 92.05 72.55 87.23 86.61 69.57 76.53 71.43 84.74 82.81 79.78 86.96 80.28 91.67 80.18 69.44 K jcn_only_AA gig,I_chr3L_20128721_20128786 chr3L + chr3L_20128721_20128786 chr3L_20128721_20128777 chr3L_20128621_20128720;chr3L_20128787_20128886 100.00 100.00 NA 100.00 NA NA 96.15 96.77 100.00 NA NA 97.37 NA NA NA NA NA NA NA 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 NA NA NA NA NA 100.00 96.00 NA 100.00 100.00 100.00 100.00 100.00 NA 97.37 NA 97.44 NA NA NA NA 97.44 100.00 94.59 100.00 NA NA 100.00 100.00 NA NA K multi_cassette CG2316,REI_chr4_205422_208622,I_chr4_206537_206603,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_213991,RI_chr4_210688_214450 chr4 - chr4_205422_208622 chr4_205422_206452;chr4_206543_206603;chr4_207467_208622 chr4_206453_206542;chr4_206604_207466 chr4_205322_205421;chr4_208623_208722 96.55 95.00 95.45 85.00 100.00 100.00 94.59 95.45 98.18 100.00 100.00 94.44 94.44 100.00 95.65 97.14 96.15 89.47 100.00 94.59 100.00 100.00 100.00 100.00 76.47 88.24 96.55 87.50 83.33 84.62 96.55 100.00 100.00 97.87 100.00 62.50 100.00 93.33 100.00 92.86 90.91 97.67 100.00 100.00 100.00 93.33 94.74 100.00 95.12 95.65 100.00 100.00 87.50 100.00 96.55 95.65 96.43 100.00 K intron_retention Synd chr3R + chr3R_16664346_16664397 chr3R_16664345_16664346;chr3R_16664397_16664398 chr3R_16664235_16664345;chr3R_16664398_16664609 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522912_523360;chrX_522949_523360 chrX_522932_523360 chrX_523361_523436;chrX_522849_522911 0.28 0.00 0.00 0.65 1.19 1.36 0.35 0.00 0.51 0.30 1.39 0.00 0.45 0.00 0.00 0.46 0.00 0.57 0.56 0.00 0.69 0.38 0.00 0.55 0.00 0.00 0.32 0.62 0.15 0.42 0.00 0.28 0.46 0.00 1.06 0.00 0.14 0.00 0.20 0.54 0.40 0.00 0.00 0.29 0.16 0.22 0.00 0.00 0.33 0.35 0.33 0.34 0.00 0.00 0.00 0.00 0.38 0.38 K alternative_acceptor CG6845,I_chr3L_148414_148465,I_chr3L_148414_148475,I_chr3L_148414_148489 chr3L + chr3L_148414_148465;chr3L_148414_148461;chr3L_148414_148489 chr3L_148414_148475 chr3L_148350_148413;chr3L_148490_148555 6.67 5.56 13.33 5.56 0.00 11.76 0.00 2.86 6.98 22.22 9.09 0.00 13.33 7.14 5.26 8.00 0.00 13.33 0.00 6.06 0.00 7.69 18.18 11.76 10.00 13.33 5.88 14.29 0.00 0.00 0.00 9.09 11.11 5.71 25.00 9.09 0.00 25.00 14.29 8.70 10.00 6.25 6.67 0.00 20.00 6.25 10.00 11.76 5.88 0.00 0.00 13.33 0.00 7.69 0.00 0.00 0.00 0.00 K alternative_donor miple2,I_chr3L_271508_273549,I_chr3L_271695_273549,I_chr3L_271922_273549,I_chr3L_274251_274594 chr3L + chr3L_271792_273549;chr3L_271217_273549;chr3L_273391_273549 chr3L_271695_273549 chr3L_273550_273649;chr3L_271209_271216 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_donor I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545799_17545850;chr2R_17545767_17545850;chr2R_17545615_17545850;chr2R_17545686_17545850;chr2R_17545690_17545850 chr2R_17545781_17545850 chr2R_17545851_17545985;chr2R_17545613_17545614 26.92 20.00 11.36 14.04 7.41 7.41 23.08 10.61 12.26 70.00 15.79 11.94 2.86 13.89 8.70 15.38 6.82 16.28 8.33 8.89 12.82 35.00 63.64 63.64 60.00 11.90 46.15 60.00 42.31 50.00 11.11 26.92 32.00 11.76 33.33 36.36 43.48 31.25 42.11 52.17 41.18 9.02 9.52 50.00 18.97 50.00 40.00 55.56 8.45 50.00 42.86 63.64 13.33 77.78 9.23 45.45 30.00 42.86 K jcn_only_AA Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754284_15755172;chrX_15754284_15755148;chrX_15754284_15755184;chrX_15754284_15755409;chrX_15754284_15755256;chrX_15754284_15754777;chrX_15754284_15755416;chrX_15754284_15755268 chrX_15754284_15755021 chrX_15754256_15754283 0.68 0.00 0.76 0.00 1.02 0.00 2.01 1.23 0.89 1.49 2.56 0.40 2.42 0.67 0.00 1.06 0.00 1.08 1.29 1.72 0.00 0.00 0.00 1.80 0.00 5.83 0.00 1.69 1.49 0.00 1.69 0.00 0.00 1.92 0.00 0.00 0.00 0.00 1.09 0.68 2.70 1.39 0.78 0.60 0.00 0.00 0.00 4.55 1.00 1.79 0.00 0.00 1.75 1.19 0.65 0.00 0.00 1.23 K intron_retention kst,I_chr3L_3367008_3367514 chr3L + chr3L_3367011_3367514 chr3L_3367010_3367011;chr3L_3367514_3367515 chr3L_3366444_3367010;chr3L_3367515_3367614 15.25 19.05 14.78 7.98 16.67 21.54 14.17 19.29 16.39 10.87 16.98 13.00 23.61 19.83 18.52 9.00 17.78 8.74 12.50 17.86 9.21 3.12 16.67 15.74 16.67 9.35 16.67 7.32 6.94 8.51 16.67 7.06 5.32 17.61 18.52 16.42 9.87 13.04 13.08 47.50 12.07 15.02 16.48 14.00 5.30 16.24 17.39 8.54 16.26 17.65 21.10 15.25 17.19 16.67 12.69 11.22 12.17 9.68 K intron_retention CG31431 chr3R + chr3R_17696581_17697703 chr3R_17696580_17696581;chr3R_17697703_17697704 chr3R_17696406_17696580;chr3R_17697704_17697862 95.60 95.83 92.68 93.62 93.85 96.04 95.00 93.77 94.87 90.62 93.26 95.22 97.41 93.75 95.86 93.33 95.60 91.04 94.20 93.88 99.03 97.33 89.36 92.41 100.00 97.81 95.88 96.08 95.45 93.85 94.07 98.80 95.92 96.89 93.65 97.92 94.44 95.65 92.31 92.73 95.74 97.18 96.12 98.25 98.78 96.60 94.20 99.40 97.19 90.20 93.58 94.64 100.00 97.56 96.18 95.45 96.05 100.00 K intron_retention skd chr3L - chr3L_20989539_20989601 chr3L_20989538_20989539;chr3L_20989601_20989602 chr3L_20989424_20989538;chr3L_20989602_20994381 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 2.17 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Su(var)2-10,I_chr2R_5005955_5006020,RI_chr2R_5006333_5006392 chr2R + chr2R_5005955_5006020 chr2R_5005955_5006010 chr2R_5005855_5005954;chr2R_5006021_5006120 100.00 100.00 100.00 100.00 98.78 100.00 100.00 100.00 100.00 98.18 97.01 100.00 100.00 100.00 98.23 100.00 100.00 99.03 98.94 100.00 100.00 100.00 98.72 98.77 98.73 100.00 100.00 100.00 100.00 98.65 97.18 100.00 100.00 100.00 97.40 98.68 99.41 100.00 100.00 98.45 100.00 100.00 98.72 100.00 100.00 100.00 99.10 100.00 100.00 100.00 98.64 100.00 100.00 100.00 100.00 100.00 99.17 100.00 K alternative_donor Rox8,I_chr3R_19872211_19872659,I_chr3R_19872214_19872630,I_chr3R_19872214_19872636,I_chr3R_19872214_19872838,I_chr3R_19876189_19876240 chr3R - chr3R_19872214_19873540;chr3R_19872214_19873682;chr3R_19872214_19873550 chr3R_19872214_19873834 chr3R_19872114_19872213;chr3R_19873835_19873903 4.17 0.00 7.69 0.00 0.00 11.11 0.00 13.33 4.35 33.33 0.00 11.11 0.00 0.00 7.14 0.00 0.00 0.00 0.00 9.09 8.33 0.00 9.09 12.50 12.50 11.11 0.00 NA 0.00 0.00 7.14 25.00 30.00 4.35 12.50 0.00 25.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 25.00 27.27 12.50 8.33 4.00 12.50 14.29 0.00 0.00 0.00 7.69 0.00 0.00 14.29 K alternative_donor msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585739_2586402;chr3L_2585739_2586036;chr3L_2585739_2586413 chr3L_2585739_2586265 chr3L_2585639_2585738;chr3L_2586414_2586502 1.06 4.17 2.27 0.00 2.08 0.00 1.69 1.46 0.66 0.00 2.78 1.28 1.47 0.00 0.00 1.30 1.75 2.67 2.22 1.21 0.00 1.14 1.06 1.72 3.03 0.00 1.85 0.00 3.09 2.78 0.00 0.00 1.19 0.00 0.00 0.00 3.33 0.00 1.82 0.00 0.00 1.27 0.00 0.00 0.00 0.00 2.70 0.00 1.71 4.17 2.04 0.00 0.00 0.00 0.00 0.00 0.00 4.76 K jcn_only_AD Tre1,I_chrX_5568743_5568799,I_chrX_5569518_5570588 chrX - chrX_5568743_5568803 chrX_5568743_5568799 chrX_5568643_5568742;chrX_5568804_5568899 0.50 0.44 1.82 1.02 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.39 0.00 0.66 0.00 1.56 0.00 0.72 0.00 0.66 0.71 0.71 1.04 0.36 0.00 0.00 0.88 2.60 0.00 0.50 0.60 0.00 0.54 1.27 2.70 1.63 0.65 1.43 0.40 1.74 0.94 0.54 0.00 1.44 0.40 0.36 0.78 1.20 0.99 1.00 0.00 0.00 0.42 0.00 0.00 0.00 0.96 0.46 K alternative_acceptor CG8786 chr3L - chr3L_19633419_19634164;chr3L_19634085_19634164 chr3L_19633702_19634164 chr3L_19634165_19634318;chr3L_19632984_19633418 9.54 7.14 7.69 10.53 0.00 10.00 10.00 4.55 6.25 0.00 0.00 4.35 20.00 9.09 7.69 10.53 14.29 7.69 16.67 5.71 12.50 16.67 11.11 20.00 0.00 0.00 15.38 9.09 14.29 8.33 15.38 12.50 7.14 22.22 0.00 7.14 10.00 10.00 9.09 4.55 12.50 0.00 9.09 6.67 0.00 15.38 9.09 7.69 20.00 11.11 14.29 12.50 NA 14.29 0.00 20.00 16.67 14.29 K multi_cassette CG2316,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_210055,I_chr4_209875_210628,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_211303,RI_chr4_210688_211927,I_chr4_210688_213991,I_chr4_210688_214019,I_chr4_210688_214049,RI_chr4_210688_214450 chr4 - chr4_208796_210623 chr4_208796_209050;chr4_209150_209203;chr4_209875_210623 chr4_209051_209149;chr4_209204_209874 chr4_208696_208795;chr4_210624_210636 100.00 100.00 100.00 100.00 66.67 100.00 87.50 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG1737 chrX + chrX_11244877_11245026 chrX_11244877_11245023 chrX_11244667_11244876;chrX_11245027_11245310 100.00 92.86 100.00 100.00 90.91 NA 100.00 100.00 96.67 NA 100.00 100.00 94.12 93.75 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 81.82 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG10627,RI_chr3L_12522349_12522442,I_chr3L_12522349_12523038 chr3L - chr3L_12522349_12523034 chr3L_12522349_12522442 chr3L_12522249_12522348;chr3L_12523035_12523548 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 1.00 0.98 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.96 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention fl(2)d,I_chr2R_9709063_9711788 chr2R - chr2R_9709063_9709270 chr2R_9709062_9709063;chr2R_9709270_9709271 chr2R_9708963_9709062;chr2R_9709271_9709345 11.36 23.08 0.00 6.06 15.38 13.33 36.36 13.16 22.22 NA NA 10.00 31.25 25.00 5.88 30.00 14.29 8.33 NA 19.35 NA 30.00 10.00 5.88 0.00 10.53 20.00 16.00 5.26 23.81 9.80 20.00 10.53 18.18 10.00 10.71 5.26 11.76 5.26 8.82 9.09 13.33 14.29 0.00 3.57 0.00 8.33 7.14 22.22 19.05 11.36 15.00 9.09 0.00 0.00 14.71 12.50 17.65 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2389073;chrX_2389272_2392054;chrX_2392149_2392515;chrX_2392665_2393243 chrX_2389074_2389271;chrX_2392055_2392148;chrX_2392516_2392664 chrX_2387149_2387248;chrX_2393244_2393291 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_last_exon CG42611,EF_chrX_9366694_9394117 chrX - chrX_9277399_9366031 chrX_9319497_9366031 chrX_9277240_9277398 chrX_9315766_9319496 chrX_9366032_9366607 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA K intron_retention CG14712,CG10535,I_chr3R_7498847_7498975 chr3R + chr3R_7480249_7480316 chr3R_7480248_7480249;chr3R_7480316_7480317 chr3R_7480017_7480248;chr3R_7480317_7480687 0.86 1.16 3.39 2.63 0.00 0.00 0.95 0.00 0.93 1.59 0.00 0.83 1.96 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 1.85 1.27 1.46 1.02 0.00 1.48 5.47 0.00 1.27 0.00 2.35 3.41 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.94 0.00 1.02 0.94 1.33 0.86 3.09 1.63 0.00 1.14 1.03 0.00 0.00 0.00 2.38 K intron_retention ken chr2R + chr2R_19762618_19762673 chr2R_19762617_19762618;chr2R_19762673_19762674 chr2R_19762448_19762617;chr2R_19762674_19765023 2.70 0.00 0.00 6.25 0.00 5.56 9.09 3.85 1.52 0.00 0.00 4.00 0.00 0.00 6.06 4.44 4.76 0.00 8.11 5.21 6.25 1.98 2.97 3.08 2.33 0.00 6.06 8.00 0.00 0.00 4.00 7.27 4.84 0.00 1.92 7.55 0.00 1.92 0.00 3.45 3.49 6.49 6.67 2.70 0.00 4.00 0.00 4.14 6.56 0.00 6.35 0.00 0.00 0.00 0.00 4.65 2.44 0.00 K intron_retention CG32579,I_chrX_16218930_16219644 chrX + chrX_16217731_16217806 chrX_16217730_16217731;chrX_16217806_16217807 chrX_16217392_16217730;chrX_16217807_16217962 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 K intron_retention mfas,I_chr3R_7811954_7812017,RI_chr3R_7818607_7818970 chr3R - chr3R_7811210_7811270 chr3R_7811209_7811210;chr3R_7811270_7811271 chr3R_7810607_7811209;chr3R_7811271_7811953 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Parp chr3RHet + chr3RHet_1936888_1936946 chr3RHet_1936892_1936946 chr3RHet_1936947_1937280;chr3RHet_1936750_1936887 100.00 NA NA 97.06 95.45 100.00 95.35 95.45 98.70 NA NA 100.00 96.77 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 NA NA NA NA 95.65 NA NA NA NA 95.83 NA NA 98.00 NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA 94.55 NA NA NA NA NA 100.00 NA NA NA K intron_retention Cf2 chr2L - chr2L_4879197_4880293 chr2L_4879196_4879197;chr2L_4880293_4880294 chr2L_4878850_4879196;chr2L_4880294_4880472 40.06 NA NA NA NA NA 60.00 45.45 41.67 NA NA NA NA NA NA NA NA NA NA 42.86 NA NA NA NA NA NA 38.46 NA NA NA NA NA NA NA NA NA 27.78 NA NA NA NA 36.36 NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA NA NA K jcn_only_AD Pen chr2L + chr2L_10057197_10057621 chr2L_10057205_10057621 chr2L_10057622_10057759;chr2L_10057128_10057196 98.62 100.00 98.36 98.73 96.72 100.00 98.86 98.57 97.01 NA 98.39 99.21 98.67 95.83 100.00 100.00 98.67 100.00 97.89 99.03 98.25 NA 96.15 95.65 95.45 100.00 NA NA NA 92.86 100.00 100.00 96.88 98.43 100.00 NA 100.00 NA NA 96.30 100.00 97.74 97.59 91.30 NA 100.00 NA 100.00 96.58 NA 95.83 100.00 NA NA 97.75 NA NA 100.00 K intron_retention CG10600,I_chr2L_18836445_18836522,RI_chr2L_18838793_18838882 chr2L - chr2L_18839456_18839523 chr2L_18839455_18839456;chr2L_18839523_18839524 chr2L_18838901_18839455;chr2L_18839524_18839656 88.89 83.33 88.46 80.77 81.82 76.00 84.21 87.10 88.89 87.50 94.12 84.00 95.00 83.33 92.00 90.48 85.00 93.75 88.89 91.30 94.44 75.00 90.48 91.30 95.65 94.74 89.29 76.19 88.89 83.33 92.86 85.71 87.72 89.74 72.00 100.00 90.91 83.33 83.33 93.02 100.00 90.70 88.89 86.67 80.00 85.19 92.86 91.94 90.32 86.36 90.00 94.44 90.00 91.67 75.86 94.44 92.31 87.88 K intron_retention CG7656,I_chr3L_15580697_15581083 chr3L - chr3L_15579701_15580104 chr3L_15579700_15579701;chr3L_15580104_15580105 chr3L_15578561_15579700;chr3L_15580105_15580380 2.41 0.00 NA 13.04 NA 6.67 0.00 9.09 5.26 NA NA 4.88 NA NA 0.00 0.00 NA NA NA 4.65 NA 2.38 2.56 0.00 8.33 NA 0.00 9.38 0.00 NA NA 0.00 4.55 13.04 0.00 4.55 4.55 0.00 2.13 3.70 0.00 10.00 NA 0.00 0.00 0.00 10.53 0.00 13.33 0.00 12.50 NA 0.00 8.00 20.00 2.44 0.00 0.00 K cassette alt chr3R - chr3R_13501256_13501808 chr3R_13501256_13501363;chr3R_13501460_13501808 chr3R_13501364_13501459 chr3R_13500797_13501255;chr3R_13501809_13502471 25.49 25.81 25.24 20.83 30.65 22.89 17.39 25.00 25.62 21.21 17.19 16.20 20.97 25.00 24.37 36.13 33.93 16.30 29.03 22.14 24.19 32.89 19.35 20.88 25.49 11.54 31.25 31.58 19.35 30.30 44.35 22.06 32.95 25.00 24.19 24.59 26.67 26.67 28.40 21.32 27.12 23.81 25.76 33.72 25.97 27.08 27.78 26.47 21.26 28.75 27.96 26.39 20.93 29.49 25.81 25.64 24.03 20.33 K intron_retention Fibp,RI_chr3L_19810268_19810326 chr3L - chr3L_19809762_19809819 chr3L_19809761_19809762;chr3L_19809819_19809820 chr3L_19809693_19809761;chr3L_19809820_19809920 5.56 0.00 0.00 7.32 0.00 8.70 8.33 4.55 0.00 NA 5.88 9.68 NA 0.00 5.56 7.69 6.25 12.50 17.65 0.00 NA 4.76 9.09 3.57 15.38 0.00 13.33 NA 33.33 NA 21.88 5.26 0.00 0.00 NA 5.56 9.09 0.00 0.00 7.41 18.75 8.11 NA 0.00 0.00 7.89 5.56 6.67 8.33 6.67 8.00 NA NA 5.56 0.00 0.00 0.00 3.85 K alternative_acceptor CG31344,RI_chr3R_11050688_11050804,I_chr3R_11054902_11054955 chr3R - chr3R_11050657_11050804 chr3R_11050688_11050804 chr3R_11050805_11050904;chr3R_11050588_11050656 0.00 0.00 0.00 0.00 0.00 3.85 0.00 3.12 0.00 0.00 0.00 3.12 0.00 0.00 0.00 4.76 0.00 0.00 0.00 2.27 0.00 17.65 2.86 6.06 7.69 NA 2.94 NA 0.00 0.00 2.38 NA NA 3.33 NA 50.00 11.11 3.12 6.67 4.76 NA 0.00 0.00 7.69 NA 4.35 12.90 NA 0.00 6.67 0.00 0.00 NA 6.67 3.70 0.00 0.00 NA K alternative_acceptor Zyx102EF,I_chr4_1078380_1078835,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1078666_1078835;chr4_1078644_1078835;chr4_1078782_1078835 chr4_1078778_1078835 chr4_1078836_1078848;chr4_1078433_1078643 30.77 16.67 37.50 37.78 30.00 26.67 30.23 32.61 26.83 33.33 37.50 17.50 40.00 44.44 41.18 36.17 12.50 8.33 14.81 60.00 14.29 33.33 36.84 35.00 55.56 15.00 35.71 28.57 70.00 22.22 26.67 50.00 28.57 35.00 33.33 36.36 50.00 14.29 38.46 16.67 25.00 21.05 18.18 30.43 37.50 14.29 18.75 15.38 22.22 50.00 35.29 50.00 30.77 29.41 27.78 6.25 55.00 41.38 K alternative_donor CG42507,Trl,EI_chr3L_14750431_14750893,I_chr3L_14750431_14750985,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14750431_14750941;chr3L_14750431_14750762;chr3L_14750431_14750893;chr3L_14750431_14750583 chr3L_14750431_14751007 chr3L_14750331_14750430;chr3L_14751008_14751008 11.76 6.67 16.67 25.81 35.00 26.67 18.18 23.08 14.89 0.00 17.65 20.45 28.00 11.11 20.00 7.32 10.53 25.93 14.29 13.64 39.29 5.00 4.35 4.55 0.00 14.29 5.88 14.29 15.38 5.00 4.76 18.75 9.52 21.05 0.00 5.26 6.25 0.00 0.00 16.67 15.00 17.07 23.81 12.50 14.29 11.43 0.00 10.53 14.89 5.26 3.57 0.00 11.76 0.00 14.81 5.56 0.00 2.44 N jcn_only_AA SmG chrX - chrX_16534047_16534125 chrX_16534064_16534125 chrX_16534126_16534194;chrX_16533995_16534046 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.26 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG6084 chr3L - chr3L_11614204_11614313 chr3L_11614203_11614204;chr3L_11614313_11614314 chr3L_11614104_11614203;chr3L_11614314_11614522 0.00 1.30 0.00 0.00 0.00 0.00 0.00 1.43 1.02 0.00 0.00 1.22 0.00 3.03 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 1.19 0.00 0.00 0.00 0.00 4.05 2.00 2.78 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG10550 chr3R - chr3R_21133632_21134032;chr3R_21133632_21133902 chr3R_21133632_21134036 chr3R_21133411_21133631;chr3R_21134037_21134116 3.33 NA NA 3.33 NA NA 4.55 0.00 8.70 NA NA NA NA NA NA NA NA NA NA 4.35 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA N multi_cassette CG14709,F_chr3R_7396835_7396923,F_chr3R_7405343_7405539 chr3R + chr3R_7395557_7397989 chr3R_7395557_7396774;chr3R_7396835_7396896;chr3R_7397045_7397107;chr3R_7397284_7397336;chr3R_7397528_7397989 chr3R_7396775_7396834;chr3R_7396897_7397044;chr3R_7397108_7397283;chr3R_7397337_7397527 chr3R_7394972_7395556;chr3R_7397990_7399584 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 81.54 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2814327_2817753 chr2R_2814327_2814894;chr2R_2815657_2816013;chr2R_2816342_2816577;chr2R_2816779_2817753 chr2R_2814895_2815656;chr2R_2816014_2816341;chr2R_2816578_2816778 chr2R_2814227_2814326;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 K jcn_only_AD twin,RI_chr3R_20032242_20045321 chr3R - chr3R_20046286_20047530;chr3R_20046286_20047514 chr3R_20046286_20047526 chr3R_20046254_20046285;chr3R_20047531_20047647 0.00 NA NA NA NA NA NA 3.70 NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 3.33 NA NA NA NA NA NA NA NA NA K intron_retention CG2219,noncoding_20558,RI_chr4_202143_202194 chr4 - chr4_202136_202194 chr4_202135_202136;chr4_202194_202195 chr4_202043_202135;chr4_202195_202294 34.69 NA 47.06 57.14 21.43 46.15 43.48 36.67 34.69 NA 31.25 44.83 30.00 NA 35.71 35.48 26.32 36.36 45.83 40.91 50.00 NA NA 20.00 NA NA NA NA NA NA 28.00 NA NA 38.46 0.00 NA NA NA NA 0.00 NA 39.29 46.67 NA NA 9.38 NA 14.29 34.88 NA NA NA 0.00 0.00 30.00 5.56 3.57 12.82 K alternative_acceptor CG3907,I_chr2R_19909065_19909249,I_chr2R_19909692_19909755 chr2R - chr2R_19909635_19909755;chr2R_19909692_19909755 chr2R_19909608_19909755 chr2R_19909756_19909779;chr2R_19909592_19909607 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA NA 0.00 0.00 0.00 9.09 NA NA NA NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 0.00 14.29 N mutually_exclusive unc-13,I_chr4_897821_902468,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_897821_899476,chr4_899619_903586;chr4_897821_902468,chr4_902576_903586 chr4_897821_903242,chr4_903350_903586 chr4_899477_899618;chr4_902469_902575 chr4_903243_903349 chr4_897721_897820;chr4_903587_903686 28.57 28.57 27.27 21.05 33.33 33.33 70.83 22.73 50.00 16.67 NA 37.14 9.09 30.77 25.00 14.29 28.57 30.00 22.73 66.67 28.57 78.57 15.38 20.00 18.18 10.53 33.33 30.00 42.86 18.18 62.07 33.33 12.50 18.18 11.11 6.90 NA 28.57 25.00 28.57 18.18 9.52 13.33 15.38 33.33 20.00 37.50 42.22 18.92 50.00 13.33 33.33 50.00 NA 40.00 NA 42.86 23.08 K intron_retention CG4662,I_chr3R_15676853_15676928 chr3R + chr3R_15676853_15677553 chr3R_15676852_15676853;chr3R_15677553_15677554 chr3R_15676787_15676852;chr3R_15677554_15677640 0.00 0.00 0.00 4.55 0.00 NA 0.00 0.00 0.00 NA 5.56 5.71 NA 0.00 0.00 0.00 0.00 0.00 0.00 4.76 NA 0.00 0.00 5.26 NA 7.14 3.85 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 5.56 4.55 3.57 0.00 0.00 0.00 0.00 3.23 NA 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD MSBP,I_chrX_15783766_15784027,RI_chrX_15783766_15784064,I_chrX_15783766_15785978 chrX - chrX_15783766_15784027;chrX_15783766_15783941 chrX_15783766_15784064 chrX_15783666_15783765;chrX_15784065_15784071 0.82 0.00 0.00 0.69 2.40 0.68 0.70 1.10 1.44 1.11 0.00 0.26 1.20 0.97 2.54 2.05 0.45 2.31 1.73 1.92 0.90 3.05 0.95 0.00 0.82 1.28 0.40 0.00 0.00 0.52 0.00 1.65 1.65 0.51 0.00 0.00 0.55 0.00 1.13 0.00 0.00 2.67 3.66 0.00 0.85 0.65 0.36 1.36 1.30 1.33 1.09 0.70 1.14 0.00 1.79 2.76 0.00 0.00 K jcn_only_AA CG32343,I_chr3L_326540_326703,RI_chr3L_326725_326866 chr3L - chr3L_326540_326866 chr3L_326725_326866 chr3L_326867_326966;chr3L_326440_326539 0.00 0.00 0.00 1.47 4.00 0.00 0.00 0.00 0.00 2.86 3.85 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 2.56 3.12 NA 0.00 0.00 NA 2.78 0.00 0.00 0.00 8.57 3.57 0.00 9.68 0.00 0.00 0.00 3.17 5.13 0.00 0.00 3.23 2.22 0.00 0.00 3.70 0.00 3.57 6.67 4.76 NA 0.00 0.00 4.17 0.00 3.51 K alternative_acceptor CG9302,I_chr2L_13377616_13377699 chr2L - chr2L_13377616_13377699 chr2L_13377651_13377699 chr2L_13377700_13377799;chr2L_13377516_13377615 99.30 98.41 100.00 100.00 100.00 98.57 100.00 99.35 99.39 97.37 100.00 99.35 100.00 98.78 100.00 100.00 100.00 100.00 100.00 99.30 100.00 97.37 100.00 98.53 97.62 99.06 100.00 98.11 98.21 100.00 98.11 98.00 98.61 98.55 98.04 97.92 97.78 97.50 100.00 100.00 96.10 99.36 98.65 100.00 100.00 97.65 98.21 98.00 100.00 100.00 98.65 98.08 96.77 100.00 99.06 100.00 100.00 98.21 K intron_retention hang,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16326733_16327197 chrX_16326732_16326733;chrX_16327197_16327198 chrX_16324959_16326732;chrX_16327198_16328171 18.18 17.54 15.38 12.68 10.87 16.22 18.00 12.68 23.08 45.83 23.53 15.29 28.57 14.89 10.94 20.41 10.20 19.40 18.18 19.38 15.69 16.67 21.43 26.09 18.75 10.87 27.27 33.33 20.41 22.45 18.00 22.73 9.09 9.30 12.50 17.02 26.19 12.77 22.97 23.53 18.18 16.25 19.44 19.67 20.69 17.39 21.88 14.58 18.60 30.77 22.81 20.59 26.09 21.05 14.04 13.04 13.89 0.00 K intron_retention CG1792,pasha chr3R + chr3R_27443182_27443243 chr3R_27443181_27443182;chr3R_27443243_27443244 chr3R_27443071_27443181;chr3R_27443244_27443477 0.00 0.00 10.53 6.90 11.76 10.00 0.00 0.00 0.00 NA NA 9.09 0.00 0.00 12.50 NA 0.00 5.56 0.00 13.79 NA 0.00 0.00 0.00 0.00 0.00 0.00 8.00 0.00 NA 0.00 0.00 0.00 3.45 12.50 0.00 0.00 0.00 0.00 0.00 0.00 8.89 NA 0.00 0.00 0.00 3.57 9.09 7.14 4.76 6.67 0.00 NA 0.00 NA 0.00 0.00 0.00 K cassette CG12207,I_chr3R_10115172_10115963,RE_chr3R_10124392_10124511 chr3R + chr3R_10116543_10126141 chr3R_10116543_10124511;chr3R_10124710_10126141 chr3R_10124512_10124709 chr3R_10116452_10116542;chr3R_10126142_10126740 77.42 77.42 80.95 72.22 68.18 69.57 95.45 68.75 77.55 61.76 73.33 77.27 66.67 88.24 71.43 62.96 86.67 73.68 55.00 79.63 75.00 84.31 87.04 86.67 84.38 78.95 89.19 78.12 73.53 88.00 77.27 85.71 69.77 70.00 80.00 87.10 86.89 84.21 92.31 74.00 72.00 75.86 84.62 75.76 76.47 75.00 84.85 62.50 73.58 96.55 82.61 85.19 86.21 88.00 73.08 77.42 80.65 58.62 K intron_retention Eip71CD chr3L + chr3L_15505454_15505575 chr3L_15505453_15505454;chr3L_15505575_15505576 chr3L_15505274_15505453;chr3L_15505576_15505836 26.67 23.53 25.00 55.56 NA NA 35.71 45.00 39.29 3.70 70.00 39.29 NA NA NA 38.10 NA NA 40.00 30.56 NA 33.33 34.62 25.93 20.00 30.77 45.45 NA NA NA 46.15 30.77 NA 31.25 23.08 26.67 24.14 26.32 26.09 35.48 NA 26.47 NA 17.24 18.75 14.29 14.29 31.25 27.59 50.00 23.08 31.58 26.32 23.81 22.22 24.00 15.38 25.00 K intron_retention shi,RI_chrX_15786633_15786860,RE_chrX_15793108_15795563 chrX + chrX_15793108_15793476 chrX_15793107_15793108;chrX_15793476_15793477 chrX_15793008_15793107;chrX_15793477_15793485 2.78 NA NA 0.00 NA NA NA NA 5.56 NA NA NA NA NA NA 12.50 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD kermit,I_chr2R_4035901_4043493 chr2R - chr2R_4035901_4043918 chr2R_4035901_4043559 chr2R_4035801_4035900;chr2R_4043919_4044128 63.22 65.85 63.79 49.02 54.55 60.00 71.43 40.79 58.90 64.15 33.33 61.43 56.76 62.50 50.00 55.70 45.00 64.00 69.05 53.44 81.82 52.63 60.49 67.21 67.50 68.97 60.42 NA 60.38 73.91 60.78 46.81 54.90 50.79 62.50 65.22 80.70 72.92 59.26 58.46 62.00 63.64 67.86 70.37 73.81 72.28 70.21 61.76 70.59 73.91 64.06 62.79 85.29 63.83 62.79 75.00 75.47 82.76 K intron_retention Uba1,I_chr2R_5579209_5579407 chr2R - chr2R_5577059_5577115 chr2R_5577058_5577059;chr2R_5577115_5577116 chr2R_5575729_5577058;chr2R_5577116_5577424 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.77 2.06 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Klp31E chr2L + chr2L_10416637_10416693 chr2L_10416637_10416690 chr2L_10416559_10416636;chr2L_10416694_10416882 75.00 NA NA 80.00 NA NA 87.50 61.54 66.67 NA NA 54.55 NA NA NA 71.43 NA NA NA 70.00 NA 77.78 NA NA NA NA NA NA NA NA 80.00 NA NA 57.14 NA NA NA NA NA 100.00 NA 80.00 NA 75.00 NA NA NA NA 88.89 NA 75.00 NA NA NA NA NA 55.56 NA K intron_retention CG32373,CG12262 chr3L + chr3L_7712558_7713159 chr3L_7712557_7712558;chr3L_7713159_7713160 chr3L_7712293_7712557;chr3L_7713160_7713516 6.80 5.56 4.62 7.41 4.84 3.57 3.33 3.49 5.32 5.66 3.70 4.59 5.41 4.55 8.82 9.59 4.88 3.64 5.71 10.00 4.17 7.61 6.80 7.59 9.84 0.00 8.82 9.09 11.29 12.96 4.65 18.33 21.05 2.70 9.26 9.23 7.78 8.70 7.32 8.99 18.92 5.68 0.00 2.22 9.26 9.47 5.26 13.64 5.45 12.96 7.14 10.42 6.67 6.58 3.23 8.75 6.32 10.13 K intron_retention CG14619,I_chrX_21869837_21869915 chrX + chrX_21869069_21869131 chrX_21869068_21869069;chrX_21869131_21869132 chrX_21868855_21869068;chrX_21869132_21869454 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 7.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RhoBTB,RI_chr3L_20370940_20371530,I_chr3L_20374844_20374891 chr3L + chr3L_20373754_20373814 chr3L_20373753_20373754;chr3L_20373814_20373815 chr3L_20373670_20373753;chr3L_20373815_20374057 4.17 0.00 3.12 10.42 7.14 0.00 17.07 2.08 12.73 0.00 0.00 0.00 21.05 12.00 4.00 8.33 7.69 6.06 5.41 6.56 4.35 3.45 10.26 3.85 29.17 9.52 17.65 12.50 5.41 3.70 3.77 0.00 3.64 0.00 0.00 27.03 5.26 7.41 3.12 2.82 7.69 10.00 0.00 2.70 0.00 0.00 7.69 2.78 7.81 0.00 5.56 0.00 NA 0.00 11.43 0.00 5.26 1.47 K jcn_only_AA Eps-15,I_chr2R_20660319_20660496 chr2R - chr2R_20657207_20659247 chr2R_20657585_20659247 chr2R_20659248_20659313;chr2R_20656942_20657206 95.08 96.26 89.02 92.91 93.48 90.74 92.31 94.25 94.17 94.05 100.00 100.00 89.80 96.36 98.41 87.50 94.44 93.22 88.68 92.98 93.88 100.00 95.38 94.44 96.83 93.75 99.10 95.83 95.51 96.97 92.50 95.80 96.27 94.62 94.68 97.26 95.54 93.46 95.97 95.15 97.42 93.66 98.33 95.50 94.91 95.85 98.95 95.61 90.08 94.57 96.00 88.89 95.08 98.89 95.60 90.91 96.18 94.66 K alternative_acceptor CG2004,I_chrX_8608130_8608508,RI_chrX_8608147_8608508,I_chrX_8608169_8608438 chrX - chrX_8608169_8608508;chrX_8608147_8608508;chrX_8608150_8608508 chrX_8608130_8608508 chrX_8608509_8608538;chrX_8608069_8608129 0.00 4.76 0.00 0.00 7.14 6.25 4.00 3.57 2.33 0.00 0.00 2.63 0.00 0.00 4.35 0.00 0.00 0.00 5.00 0.00 0.00 5.88 0.00 3.33 0.00 0.00 0.00 2.44 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 2.33 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 3.70 0.00 K intron_retention Uch,CG10880 chr2L - chr2L_2213558_2213615 chr2L_2213557_2213558;chr2L_2213615_2213616 chr2L_2213489_2213557;chr2L_2213616_2213684 0.00 0.00 0.00 1.81 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 1.50 0.00 0.36 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.42 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 K jcn_only_AA CG1815,I_chr3R_27501104_27501167,I_chr3R_27501104_27501176 chr3R + chr3R_27501104_27501176;chr3R_27501104_27501179 chr3R_27501104_27501167 chr3R_27501004_27501103;chr3R_27501180_27501267 6.54 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA NA NA NA K alternative_donor CG6236 chr3R - chr3R_11153785_11153849;chr3R_11153785_11153869 chr3R_11153785_11153876 chr3R_11153649_11153784;chr3R_11153877_11153988 79.66 78.57 84.21 78.72 72.73 76.19 76.32 80.00 74.42 80.00 81.82 75.38 58.33 62.50 89.47 83.33 NA 84.62 84.62 76.00 70.00 65.52 86.67 81.63 76.00 60.00 83.58 81.08 80.00 80.60 75.00 84.13 78.86 78.95 82.05 83.33 79.25 82.81 75.93 80.36 81.13 81.43 69.23 81.40 76.00 80.28 85.37 76.79 76.56 80.85 80.33 75.00 75.00 79.31 78.95 81.63 87.50 69.57 K intron_retention CG18522,CG18519 chr3R - chr3R_11360785_11361006 chr3R_11360784_11360785;chr3R_11361006_11361007 chr3R_11358969_11360784;chr3R_11361007_11361240 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 1.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.68 1.43 2.01 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 K intron_retention AnnIX chr3R + chr3R_16891137_16893167 chr3R_16891136_16891137;chr3R_16893167_16893168 chr3R_16891130_16891136;chr3R_16893168_16893221 0.00 NA 0.00 4.35 NA NA 0.00 0.00 0.00 NA 0.00 2.86 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 2.70 NA 0.00 NA NA NA 0.00 NA NA NA K intron_retention RpL15 chr3LHet + chr3LHet_2397859_2398049 chr3LHet_2397858_2397859;chr3LHet_2398049_2398050 chr3LHet_2397802_2397858;chr3LHet_2398050_2398052 100.00 100.00 100.00 100.00 NA 100.00 98.90 97.96 100.00 100.00 NA 100.00 100.00 100.00 100.00 97.14 100.00 NA 100.00 97.22 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 91.67 100.00 NA 100.00 100.00 NA NA 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 94.44 K alternative_last_exon CG2747,ImpE3 chr3R - chr3R_3850792_3856366 chr3R_3855342_3856366 chr3R_3850375_3850791 chr3R_3853932_3855341 chr3R_3856367_3856455 8.70 10.00 3.12 4.76 6.67 7.69 5.41 4.55 5.56 14.29 5.56 8.89 8.70 7.69 6.90 8.33 4.55 5.00 6.45 6.12 8.70 10.71 10.71 8.33 10.00 6.45 8.33 26.67 27.78 8.70 7.69 28.57 12.50 4.65 6.25 11.11 9.68 11.11 6.25 11.43 27.27 4.55 9.09 10.00 37.50 13.33 13.33 17.65 6.12 42.86 6.98 9.52 20.00 40.00 3.12 25.00 20.00 30.00 K intron_retention Atg2 chr3L + chr3L_2774487_2774567 chr3L_2774486_2774487;chr3L_2774567_2774568 chr3L_2774319_2774486;chr3L_2774568_2780718 0.00 NA NA 16.67 NA NA 4.76 NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 4.00 NA 0.00 0.00 NA NA NA 50.00 58.33 33.33 NA 0.00 NA 0.00 NA NA 0.00 NA 7.14 NA 0.00 NA 13.33 NA 0.00 NA NA NA 0.00 21.05 NA 0.00 NA NA NA 0.00 NA NA NA K jcn_only_AA Trx-2,I_chr2L_9613459_9615301 chr2L + chr2L_9613376_9615301 chr2L_9613376_9613432 chr2L_9613359_9613375 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG6195 chr3R - chr3R_15472854_15472934 chr3R_15472853_15472854;chr3R_15472934_15472935 chr3R_15472596_15472853;chr3R_15472935_15473599 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 2.06 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 1.20 5.45 2.88 6.67 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 14.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.66 0.00 0.00 0.73 1.27 0.00 1.79 0.00 0.00 K intron_retention CG17272 chr3R - chr3R_16649462_16649524 chr3R_16649461_16649462;chr3R_16649524_16649525 chr3R_16649028_16649461;chr3R_16649525_16649589 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 7.14 NA NA 0.00 0.00 NA NA NA NA 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 NA K intron_retention CG18012 chr3R - chr3R_13635522_13635582 chr3R_13635521_13635522;chr3R_13635582_13635583 chr3R_13635117_13635521;chr3R_13635583_13636140 92.31 NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 91.67 NA NA 92.31 NA 100.00 90.91 94.44 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 90.00 90.00 NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA N alternative_donor CG32066 chr3L - chr3L_10652769_10654020 chr3L_10652769_10653882 chr3L_10652465_10652768;chr3L_10654021_10654125 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.16 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG8005,noncoding_11293 chr3L + chr3L_8191584_8191652 chr3L_8191584_8191641 chr3L_8191314_8191583;chr3L_8191653_8191878 80.00 77.78 66.67 72.73 100.00 NA 80.00 50.00 81.25 NA 77.78 78.57 87.50 NA 90.00 81.82 NA NA 88.89 93.33 66.67 NA 61.54 90.91 87.50 87.50 88.24 81.25 66.67 NA 20.00 NA 87.50 76.92 55.56 NA 68.42 90.00 60.00 69.23 NA 75.00 NA 87.50 NA NA 90.00 NA 73.68 80.00 83.33 90.91 70.00 NA 100.00 76.47 83.33 75.00 K cassette Shawn_Tyler,CG14207,RI_chrX_19502515_19504413,CE_chrX_19503187_19504413 chrX + chrX_19499716_19504413 chrX_19499716_19503495;chrX_19503523_19504413 chrX_19503496_19503522 chrX_19499191_19499715;chrX_19504414_19504495 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 K intron_retention CG31782,VhaSFD,RI_chr2L_16731891_16731942 chr2L - chr2L_16723898_16724057 chr2L_16723897_16723898;chr2L_16724057_16724058 chr2L_16723138_16723897;chr2L_16724058_16724171 0.00 0.00 0.00 0.67 1.41 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 K jcn_only_AA Cap-H2 chr3R + chr3R_6589674_6589832;chr3R_6589674_6589871 chr3R_6589674_6589835 chr3R_6588751_6589673;chr3R_6589872_6590095 52.34 NA NA 38.10 NA 55.00 NA 52.17 NA NA NA 41.94 NA NA NA NA NA NA 28.57 72.22 NA NA NA NA NA 70.00 NA NA NA NA NA NA NA 70.83 NA NA NA NA NA NA NA 44.44 NA NA NA NA NA NA 52.50 NA NA NA NA NA NA NA NA NA K intron_retention yu chrX - chrX_5309489_5309560 chrX_5309488_5309489;chrX_5309560_5309561 chrX_5309355_5309488;chrX_5309561_5309951 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.56 6.06 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG31033,RI_chr3R_25658089_25658914 chr3R - chr3R_25658095_25658914;chr3R_25658071_25658914 chr3R_25658089_25658914 chr3R_25658915_25659003;chr3R_25657989_25658070 1.32 1.54 2.13 2.99 0.00 0.00 0.00 1.05 0.00 0.00 0.00 1.63 2.00 0.00 1.14 3.85 3.64 1.79 0.00 2.44 3.70 0.00 2.38 0.00 0.00 1.56 1.32 0.00 1.75 1.56 0.00 0.00 3.45 1.85 0.00 1.82 1.72 0.00 0.00 3.51 4.44 1.41 0.00 0.00 0.00 0.00 5.08 0.90 0.75 1.56 1.96 1.92 0.00 1.79 0.00 3.08 2.70 0.68 K alternative_last_exon BEAF-32,I_chr2R_10658570_10659304,noncoding_6875 chr2R + chr2R_10658335_10659304 chr2R_10658335_10658826 chr2R_10659305_10660149 chr2R_10658827_10659147 chr2R_10657939_10658334 47.22 47.06 47.37 61.26 51.16 45.00 47.73 51.49 54.00 28.30 42.19 50.77 55.77 37.25 50.68 53.85 48.84 52.63 54.39 51.83 50.00 40.74 59.76 51.52 33.96 40.00 47.92 33.33 28.81 46.30 57.81 36.54 47.50 53.85 43.90 52.73 27.88 22.58 42.98 40.79 40.62 49.04 23.53 38.18 50.00 35.00 32.00 60.78 39.55 46.88 47.22 36.59 27.59 26.32 53.85 48.31 42.57 47.56 K alternative_acceptor tow chr3L + chr3L_6941016_6941085 chr3L_6941016_6941070 chr3L_6940922_6941015;chr3L_6941086_6941098 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N jcn_only_AD Tpi chr3R - chr3R_25959817_25960000;chr3R_25959817_25959972 chr3R_25959817_25959887 chr3R_25959232_25959816;chr3R_25960001_25960005 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 11.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG2065 chr2R + chr2R_3551440_3551537 chr2R_3551469_3551537 chr2R_3551538_3551801;chr2R_3551288_3551439 2.08 1.67 0.00 1.64 NA 0.00 2.56 0.00 4.84 4.88 4.35 1.72 5.00 2.63 2.63 2.94 0.00 0.00 0.00 3.37 0.00 0.00 3.91 2.60 2.22 0.00 1.69 3.33 15.15 0.00 7.69 3.57 10.20 1.33 0.00 0.00 1.75 4.41 3.45 1.27 9.30 0.00 6.67 0.00 7.46 0.00 2.17 2.22 6.25 2.00 5.26 0.00 1.82 0.00 3.12 0.00 0.00 4.71 K intron_retention Pten,I_chr2L_10256507_10256803,F_chr2L_10259663_10260253 chr2L - chr2L_10260585_10260729 chr2L_10260584_10260585;chr2L_10260729_10260730 chr2L_10260254_10260584;chr2L_10260730_10260735 100.00 100.00 100.00 100.00 NA NA 96.15 95.65 96.43 NA NA 100.00 93.75 100.00 100.00 96.30 100.00 NA 91.67 100.00 87.50 100.00 100.00 88.89 NA NA 100.00 NA 100.00 92.31 NA NA 100.00 100.00 100.00 88.89 88.89 100.00 87.50 100.00 100.00 100.00 90.00 100.00 NA 90.91 NA 94.12 100.00 NA 100.00 90.91 NA NA 90.91 NA NA 100.00 K intron_retention mfas,I_chr3R_7811954_7812017,RI_chr3R_7818607_7818970 chr3R - chr3R_7811954_7812025 chr3R_7811953_7811954;chr3R_7812025_7812026 chr3R_7811854_7811953;chr3R_7812026_7812117 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention wfs1 chr3R - chr3R_18515737_18515796 chr3R_18515736_18515737;chr3R_18515796_18515797 chr3R_18514175_18515736;chr3R_18515797_18515895 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA 9.09 NA NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 15.38 NA NA NA NA 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 NA NA NA NA NA NA NA NA N jcn_only_AA Aats-val,I_chr2R_9088330_9088393,I_chr2R_9088412_9088502 chr2R + chr2R_9088330_9088393;chr2R_9088330_9088502 chr2R_9088330_9088517 chr2R_9088312_9088329;chr2R_9088518_9088602 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_927771_929704,CG32021,RI_chr4_928193_928245,I_chr4_928482_929704,noncoding_20815,I_chr4_929811_932812 chr4 - chr4_928551_929704 chr4_928550_928551;chr4_929704_929705 chr4_928246_928550;chr4_929705_929804 91.24 96.77 86.21 95.56 95.83 90.48 89.72 87.76 88.89 87.50 100.00 88.14 97.14 93.33 97.62 96.49 96.77 87.10 97.67 96.97 84.00 90.14 92.73 90.24 94.74 88.57 95.45 97.78 94.12 95.24 77.63 100.00 93.94 88.52 87.50 97.50 91.18 93.33 95.65 85.00 86.96 86.15 89.47 91.53 93.75 84.85 86.96 88.10 95.83 88.37 85.96 84.85 NA 91.30 89.47 95.65 90.00 94.12 K alternative_acceptor CG6116,I_chr2L_13291292_13292541 chr2L + chr2L_13287314_13287376 chr2L_13287314_13287373 chr2L_13286871_13287313;chr2L_13287377_13288241 75.00 NA NA 76.47 50.00 80.00 90.91 72.73 75.00 NA NA 60.00 66.67 66.67 90.91 76.92 60.00 87.50 60.00 73.68 NA 85.00 80.00 72.73 58.33 88.89 56.25 92.31 68.18 90.00 NA 87.50 68.75 83.33 66.67 NA 64.71 NA 82.35 74.07 75.00 81.82 NA 75.00 76.19 80.00 85.71 65.96 75.00 72.73 69.23 75.00 NA NA 52.94 NA 75.00 69.70 K intron_retention Hsc70-4,EI_chr3R_11068693_11068772 chr3R + chr3R_11068693_11070081 chr3R_11068692_11068693;chr3R_11070081_11070082 chr3R_11068632_11068692;chr3R_11070082_11072336 54.55 NA NA NA NA NA NA 54.55 NA NA NA 54.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 77.78 NA NA NA NA NA NA NA NA NA NA NA NA 33.33 54.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157014_157316,RI_chr4_157014_157504,I_chr4_157794_157864 chr4 + chr4_156998_157316 chr4_157014_157316 chr4_157317_157403;chr4_156984_156997 83.76 NA NA 54.55 NA NA NA 81.82 73.68 NA NA 100.00 NA NA NA 87.50 NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor spz chr3R - chr3R_22892176_22892329 chr3R_22892203_22892329 chr3R_22892330_22892387;chr3R_22892041_22892175 60.23 55.47 62.84 74.02 61.83 60.00 74.86 60.05 62.65 54.26 63.39 61.52 60.23 60.80 58.30 62.35 62.25 65.99 61.29 61.61 61.98 46.67 49.07 54.45 63.10 72.67 42.22 47.27 71.05 64.00 61.45 61.54 67.74 61.36 57.47 50.83 55.87 56.42 53.41 58.94 69.43 64.27 67.11 57.68 47.41 58.54 50.00 59.71 63.50 48.64 52.16 60.69 50.68 56.32 61.57 57.39 41.94 57.28 K mutually_exclusive HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13170581_13178924,chrX_13178996_13179235 chrX_13170581_13176198,chrX_13176263_13179235 chrX_13178925_13178995 chrX_13176199_13176262 chrX_13170481_13170580;chrX_13179236_13179281 100.00 100.00 100.00 97.87 100.00 100.00 98.15 99.14 98.78 100.00 100.00 100.00 96.77 97.22 97.73 100.00 97.44 100.00 100.00 98.04 100.00 97.37 100.00 100.00 100.00 97.06 97.83 100.00 100.00 100.00 97.96 100.00 100.00 98.46 96.88 96.43 100.00 100.00 100.00 100.00 96.88 98.75 100.00 97.30 94.74 97.83 100.00 100.00 100.00 96.30 98.00 96.77 95.24 100.00 98.15 100.00 100.00 96.00 K alternative_acceptor CG5355,I_chr2L_10413213_10413324 chr2L - chr2L_10411009_10411090 chr2L_10411037_10411090 chr2L_10411091_10411363;chr2L_10410537_10411008 100.00 100.00 98.59 99.12 100.00 100.00 98.85 100.00 99.29 100.00 100.00 100.00 100.00 100.00 100.00 98.68 100.00 100.00 100.00 99.32 100.00 100.00 100.00 98.92 98.08 97.14 100.00 100.00 100.00 100.00 98.00 98.59 100.00 98.97 98.28 94.92 100.00 100.00 100.00 99.13 100.00 100.00 100.00 98.75 98.91 99.03 100.00 100.00 100.00 98.85 100.00 100.00 100.00 98.78 100.00 98.04 100.00 100.00 K intron_retention CG7593 chr3R - chr3R_25550162_25550217 chr3R_25550161_25550162;chr3R_25550217_25550218 chr3R_25549866_25550161;chr3R_25550218_25550663 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG15715,RI_chr3L_15829349_15830356,I_chr3L_15830026_15830356,RI_chr3L_15830030_15830191,RI_chr3L_15830229_15830356 chr3L - chr3L_15830026_15830356;chr3L_15830229_15830356 chr3L_15830030_15830356 chr3L_15830357_15830456;chr3L_15830007_15830025 100.00 100.00 96.88 97.56 100.00 94.74 93.33 100.00 97.62 92.86 92.86 100.00 94.44 100.00 97.06 95.65 100.00 94.44 96.55 100.00 100.00 100.00 100.00 97.30 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 96.00 95.24 93.10 92.00 96.88 94.44 100.00 100.00 100.00 100.00 94.44 100.00 93.33 97.01 100.00 100.00 94.74 93.10 93.55 100.00 94.59 100.00 100.00 K cassette Nedd4,I_chr3L_17534504_17535990,I_chr3L_17535485_17536604,I_chr3L_17536813_17536863 chr3L + chr3L_17534504_17536604 chr3L_17534504_17535299;chr3L_17535485_17536604 chr3L_17535300_17535484 chr3L_17534419_17534503;chr3L_17536605_17536704 5.31 6.67 6.25 2.87 2.78 2.27 8.33 3.57 4.84 4.81 8.75 7.76 2.60 4.76 4.12 7.19 2.78 8.42 3.26 8.77 4.76 15.15 5.03 6.98 6.38 4.44 5.71 7.41 6.34 6.87 10.17 6.25 4.61 3.73 5.31 3.65 5.76 6.67 5.26 8.41 6.98 3.35 4.35 9.70 5.31 5.26 4.55 7.73 4.76 6.25 7.14 4.00 3.49 4.29 4.96 7.14 6.06 6.67 K intron_retention akirin,I_chr3L_7363173_7364806,I_chr3L_7363177_7364806,I_chr3L_7363177_7364831,I_chr3L_7363211_7364831,I_chr3L_7363731_7364806,I_chr3L_7364126_7364806,RI_chr3L_7364737_7364806 chr3L + chr3L_7363169_7364806 chr3L_7363168_7363169;chr3L_7364806_7364807 chr3L_7363111_7363168;chr3L_7364807_7364906 55.17 55.26 60.44 51.52 59.52 60.94 58.77 49.78 59.66 49.15 53.41 49.72 52.31 54.95 56.19 47.50 56.64 58.11 63.46 48.94 67.47 55.56 57.80 54.64 55.17 53.85 50.33 47.11 42.37 45.83 59.00 40.54 43.10 55.29 54.05 63.29 60.80 54.22 54.55 52.59 60.00 58.55 56.63 62.13 60.87 54.43 58.97 50.98 55.17 49.07 55.12 54.17 70.18 61.33 67.23 55.56 61.11 52.83 K jcn_only_AA None chrU + chrU_1352865_1369155 chrU_1352865_1362596 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 K alternative_acceptor noncoding_23420,hep chrX - chrX_12975077_12975545 chrX_12975152_12975545 chrX_12975546_12976097;chrX_12974671_12975076 34.04 34.78 34.86 57.03 32.50 27.08 16.00 48.70 36.02 33.33 32.84 34.04 33.87 43.64 29.29 40.85 47.95 44.59 44.62 32.45 35.82 53.33 33.18 37.65 47.06 63.33 33.76 44.12 27.95 29.01 39.29 26.55 28.09 38.02 38.39 52.00 33.08 36.08 35.20 36.95 43.82 38.77 33.33 38.21 22.00 30.11 27.85 25.56 28.90 32.53 32.14 37.04 24.42 33.60 41.03 32.03 23.16 17.36 K intron_retention mbf1,RI_chr3L_16567888_16567952,RI_chr3L_16568077_16568816 chr3L + chr3L_16567888_16567952 chr3L_16567887_16567888;chr3L_16567952_16567953 chr3L_16567788_16567887;chr3L_16567953_16568052 84.44 88.89 90.91 90.57 NA NA 84.44 86.36 83.33 NA 66.67 66.67 75.00 77.78 88.89 95.00 NA 87.50 90.00 82.14 100.00 65.38 94.74 94.12 75.00 96.30 100.00 97.73 76.67 87.50 77.78 NA 68.42 90.48 64.29 88.89 55.00 87.50 81.25 80.00 75.00 69.57 87.50 77.78 58.33 76.92 70.59 69.23 81.82 95.00 100.00 75.00 90.91 90.00 NA 73.33 95.24 91.67 K alternative_acceptor Zyx102EF,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1081280_1081366;chr4_1081286_1081366 chr4_1081261_1081366 chr4_1081367_1081379;chr4_1081180_1081260 58.33 NA NA 66.67 NA NA 63.16 60.00 62.96 NA NA 57.14 75.00 NA NA 57.14 NA NA 58.33 56.25 NA NA NA NA NA NA NA NA NA NA 69.23 NA NA 52.94 NA NA NA NA NA NA NA 46.67 NA NA NA NA NA NA 56.25 NA NA NA NA NA NA NA NA NA K intron_retention mod chr3R + chr3R_27879278_27879344 chr3R_27879277_27879278;chr3R_27879344_27879345 chr3R_27878968_27879277;chr3R_27879345_27880079 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor vlc chr2R + chr2R_1589953_1590371;chr2R_1589894_1590371;chr2R_1589799_1590371;chr2R_1589805_1590371;chr2R_1590318_1590371;chr2R_1589807_1590371;chr2R_1590294_1590371;chr2R_1589693_1590371 chr2R_1589722_1590371 chr2R_1590372_1590451;chr2R_1589612_1589692 11.76 11.76 12.82 16.67 13.04 12.00 7.27 13.64 10.13 18.75 7.69 10.67 9.76 16.28 20.00 10.00 12.90 17.50 6.25 7.35 7.41 11.76 4.55 14.29 4.55 5.26 7.89 7.69 7.14 4.17 8.70 16.67 8.70 8.86 13.64 0.00 22.22 17.86 12.00 7.89 23.08 12.16 10.53 16.67 25.00 4.76 18.18 10.00 9.76 12.00 14.58 14.81 11.76 9.09 14.81 13.04 11.11 5.26 K intron_retention REG chrX + chrX_13106426_13106496 chrX_13106425_13106426;chrX_13106496_13106497 chrX_13106389_13106425;chrX_13106497_13106991 8.09 8.70 8.09 4.38 10.37 9.01 9.23 5.22 6.48 8.04 6.53 7.11 7.03 7.52 6.15 7.01 8.16 6.25 8.59 5.70 6.73 15.79 7.88 7.28 8.20 8.18 9.38 10.83 27.66 13.24 8.59 8.54 8.96 6.11 8.47 15.69 6.70 7.50 6.42 9.14 15.15 6.40 7.87 7.14 3.85 8.14 7.44 8.51 6.67 6.90 12.06 10.60 7.41 10.29 8.74 9.09 6.18 10.00 K intron_retention CG30193,CG30190 chr2R + chr2R_18812899_18812963 chr2R_18812898_18812899;chr2R_18812963_18812964 chr2R_18812672_18812898;chr2R_18812964_18813007 95.65 94.74 95.45 100.00 100.00 95.24 92.31 94.23 98.48 NA 93.33 97.56 92.00 96.43 95.65 92.59 95.00 100.00 100.00 93.55 93.33 100.00 96.67 94.74 95.00 96.30 100.00 88.89 100.00 100.00 100.00 90.91 92.31 97.67 100.00 100.00 92.31 92.86 100.00 92.59 100.00 95.12 96.43 95.24 100.00 95.65 93.33 95.65 95.74 93.33 96.55 88.89 NA 100.00 96.15 94.12 95.00 100.00 K intron_retention RI_chr3L_20370940_20371530,I_chr3L_20374844_20374891,fbl chr3L + chr3L_20383735_20383789 chr3L_20383734_20383735;chr3L_20383789_20383790 chr3L_20383558_20383734;chr3L_20383790_20383925 20.55 13.13 15.71 32.35 18.87 17.46 35.44 18.18 20.33 14.58 26.42 22.43 20.83 11.54 24.00 19.18 17.02 23.08 23.53 21.31 28.57 33.33 21.31 13.16 26.25 22.92 17.86 32.31 31.15 22.89 36.00 26.87 16.98 18.87 20.55 36.11 16.30 16.67 13.67 18.67 40.58 16.39 26.67 13.33 31.94 28.71 9.30 33.00 18.69 23.77 17.09 16.92 7.41 10.26 22.73 18.87 13.18 35.23 N jcn_only_AD CG32594 chrX + chrX_14927496_14927638;chrX_14927381_14927638;chrX_14926607_14927638 chrX_14927033_14927638 chrX_14927639_14928125;chrX_14925576_14926606 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RpL27,I_chr3R_21510239_21510298,RI_chr3R_21510239_21510441,I_chr3R_21510239_21510464,I_chr3R_21510239_21510656,I_chr3R_21510239_21510726 chr3R - chr3R_21510239_21510464;chr3R_21510239_21510656;chr3R_21510239_21510739;chr3R_21510239_21510298;chr3R_21510239_21510746 chr3R_21510239_21510680 chr3R_21510139_21510238;chr3R_21510747_21510756 7.27 7.14 9.68 3.92 3.23 3.70 14.81 5.26 10.64 7.69 7.41 4.88 7.69 7.14 4.76 13.64 3.45 7.69 1.61 8.51 8.11 0.00 31.25 11.11 15.00 4.00 22.73 18.75 24.49 4.17 2.99 6.06 4.00 6.15 14.29 18.75 11.43 12.50 11.11 3.12 9.09 2.21 3.12 6.25 4.55 8.33 11.11 5.88 2.94 7.14 22.22 15.00 4.35 30.00 3.30 11.54 7.27 5.10 K intron_retention Trp1 chr2L + chr2L_10009419_10009480 chr2L_10009418_10009419;chr2L_10009480_10009481 chr2L_10009393_10009418;chr2L_10009481_10009536 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 K jcn_only_AD RpL31,CG1827 chr2R + chr2R_5474844_5474951;chr2R_5474734_5474951 chr2R_5474789_5474951 chr2R_5474952_5475211;chr2R_5474727_5474733 1.69 2.33 2.39 1.02 1.38 2.50 7.49 2.65 3.49 0.84 3.86 2.23 3.36 7.26 0.46 2.30 1.47 2.20 1.40 1.72 3.27 0.75 2.79 1.48 0.46 1.72 12.24 3.11 1.55 1.77 1.55 1.63 0.36 1.27 2.45 5.70 1.38 1.29 1.63 0.75 0.88 0.91 1.62 3.49 0.85 1.69 3.65 0.85 1.67 1.56 4.55 3.75 1.43 11.59 0.73 3.32 3.33 0.51 N cassette Clic chrX - chrX_13708019_13715957 chrX_13708019_13708409;chrX_13708920_13715957 chrX_13708410_13708919 chrX_13707908_13708018;chrX_13715958_13716374 100.00 100.00 100.00 95.90 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CEI_chrX_17177009_17196871,CG5445,I_chrX_17196752_17196871,RI_chrX_17196772_17196871,I_chrX_17196820_17196875,I_chrX_17198393_17198730 chrX + chrX_17196681_17196871;chrX_17196546_17196871;chrX_17196820_17196871;chrX_17196617_17196871 chrX_17196541_17196871 chrX_17196872_17196971;chrX_17196536_17196540 11.11 8.33 20.00 33.33 11.11 25.00 9.09 23.08 37.50 14.29 27.27 12.50 20.00 12.50 33.33 25.00 33.33 33.33 18.18 44.83 22.22 23.53 0.00 6.25 0.00 11.11 0.00 7.69 6.25 8.33 10.00 20.00 25.00 33.33 10.00 11.11 6.25 0.00 7.14 9.09 10.00 28.00 30.00 10.00 21.43 7.69 6.67 15.00 25.00 6.25 6.25 0.00 8.33 10.00 18.18 0.00 0.00 15.79 K intron_retention CG17082,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_645254_645306 chr2R_645253_645254;chr2R_645306_645307 chr2R_645185_645253;chr2R_645307_645382 1.61 10.00 9.68 4.76 0.00 0.00 5.88 1.61 2.74 NA 0.00 9.84 4.88 0.00 0.00 11.76 0.00 0.00 2.70 4.08 0.00 NA 0.00 0.00 0.00 0.00 8.89 7.14 0.00 0.00 2.63 0.00 0.00 6.94 0.00 5.00 0.00 9.52 0.00 2.00 6.67 4.11 5.71 0.00 0.00 0.00 0.00 0.00 8.64 2.22 3.23 5.00 7.14 0.00 0.00 2.22 5.26 0.00 K alternative_acceptor Gpo-1,I_chr2R_11747621_11747699,EI_chr2R_11747445_11747699,I_chr2R_11749758_11750187,I_chr2R_11756325_11756380 chr2R - chr2R_11748228_11750187;chr2R_11749758_11750187 chr2R_11748259_11750187 chr2R_11750188_11750219;chr2R_11748106_11748227 92.98 93.75 87.50 87.50 NA 92.86 85.71 95.00 88.89 94.44 100.00 92.11 85.71 84.62 100.00 86.36 90.91 100.00 92.31 88.89 93.33 96.88 97.62 92.68 97.14 100.00 94.59 100.00 92.00 92.86 90.48 91.30 91.30 91.30 96.30 100.00 93.33 90.62 97.14 98.11 93.10 91.67 90.00 95.24 96.88 94.74 94.74 97.62 92.86 93.33 94.03 93.55 92.86 100.00 87.50 92.31 91.67 86.67 K intron_retention I_chr3R_22696095_22697413,Rb97D chr3R - chr3R_22700824_22700895 chr3R_22700823_22700824;chr3R_22700895_22700896 chr3R_22700579_22700823;chr3R_22700896_22701125 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 1.68 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.08 3.03 0.00 0.00 0.00 0.00 0.00 10.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention SpdS,I_chr3R_5457577_5457950 chr3R + chr3R_5458023_5458098 chr3R_5458022_5458023;chr3R_5458098_5458099 chr3R_5458006_5458022;chr3R_5458099_5458909 13.63 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 27.27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG31716,I_chr2L_10397648_10398034 chr2L + chr2L_10401595_10401661 chr2L_10401594_10401595;chr2L_10401661_10401662 chr2L_10401334_10401594;chr2L_10401662_10401741 1.71 2.38 0.00 0.00 0.00 0.00 12.73 0.00 0.00 4.76 0.00 3.45 3.57 0.00 3.33 2.22 0.00 0.00 6.67 1.30 4.55 0.00 4.44 2.27 7.41 12.50 2.13 9.09 16.67 0.00 14.71 3.33 0.00 5.36 0.00 12.00 0.00 0.00 0.00 4.00 23.08 3.53 0.00 9.38 5.26 11.11 NA 0.00 3.03 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Uev1A,RI_chr3L_5358186_5359074,I_chr3L_5360875_5360954 chr3L - chr3L_5357310_5358042 chr3L_5357309_5357310;chr3L_5358042_5358043 chr3L_5357184_5357309;chr3L_5358043_5358185 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette faf,RI_chr3R_27603474_27603893,E_chr3R_27613964_27614381,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27613920_27615218 chr3R_27613920_27614381;chr3R_27614567_27615218 chr3R_27614382_27614566 chr3R_27613864_27613919;chr3R_27615219_27615732 5.88 6.02 2.67 9.80 6.45 3.64 8.42 4.50 4.97 8.00 3.77 7.44 6.90 4.35 4.29 2.56 5.88 4.48 6.06 6.29 1.54 8.33 2.99 5.66 10.71 6.35 5.26 8.96 8.26 5.21 3.49 8.43 6.82 4.35 7.25 11.48 4.55 5.95 5.15 3.69 10.87 4.86 3.92 3.33 9.78 9.09 7.32 5.63 6.14 5.81 5.34 5.80 4.62 7.14 5.75 6.38 9.30 6.19 K intron_retention RI_chr3L_20370940_20371530,I_chr3L_20374844_20374891,fbl chr3L + chr3L_20383309_20383373 chr3L_20383308_20383309;chr3L_20383373_20383374 chr3L_20383016_20383308;chr3L_20383374_20383493 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 93.75 NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 92.31 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K intron_retention CG12703 chrX + chrX_19645123_19645380 chrX_19645122_19645123;chrX_19645380_19645381 chrX_19644933_19645122;chrX_19645381_19645579 98.18 100.00 97.78 96.36 96.55 100.00 96.08 100.00 98.80 95.00 97.06 97.26 100.00 95.24 100.00 98.04 96.88 97.87 100.00 98.92 100.00 96.15 95.92 97.37 95.24 94.44 94.29 100.00 96.30 97.37 98.18 100.00 100.00 100.00 97.30 96.15 100.00 97.22 100.00 98.48 96.97 100.00 96.55 100.00 96.97 100.00 100.00 98.21 98.92 96.30 100.00 100.00 100.00 95.65 100.00 100.00 96.55 100.00 K intron_retention HDAC4,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13178996_13179235 chrX_13178995_13178996;chrX_13179235_13179236 chrX_13178925_13178995;chrX_13179236_13179281 96.88 100.00 92.86 77.42 NA 100.00 97.22 100.00 96.67 NA 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 96.15 89.19 90.91 NA 100.00 100.00 90.00 100.00 100.00 NA 100.00 90.91 100.00 NA 90.91 100.00 100.00 77.78 88.89 100.00 NA 90.91 100.00 95.45 95.00 NA NA 93.33 NA 96.30 96.88 NA 91.67 92.31 NA NA 93.33 NA NA 88.89 K jcn_only_AA Cip4,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4324448_4324861 chr3L_4324451_4324861 chr3L_4324862_4324996;chr3L_4324284_4324447 50.00 50.00 32.26 57.58 34.55 50.91 51.33 44.74 52.33 54.00 25.00 48.51 30.51 28.57 30.30 32.05 32.79 27.68 38.46 55.43 32.43 56.00 56.30 56.79 46.55 35.06 44.44 31.25 52.86 47.96 35.29 39.66 37.50 51.69 58.00 40.24 56.98 51.67 64.20 55.84 40.51 47.95 35.00 65.22 39.62 48.00 62.32 51.39 50.64 55.56 57.94 66.67 66.67 60.00 31.15 51.79 62.07 50.25 K intron_retention Fbxl4 chrX - chrX_14129411_14129476 chrX_14129410_14129411;chrX_14129476_14129477 chrX_14129245_14129410;chrX_14129477_14129641 6.67 NA NA NA NA 0.00 NA NA 23.53 NA NA NA NA NA 15.38 NA NA NA NA 8.00 NA NA 14.29 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 6.67 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA Sec16,I_chrX_12501913_12502010,I_chrX_12502899_12502973 chrX + chrX_12502899_12502970;chrX_12502899_12502973 chrX_12502899_12502967 chrX_12502799_12502898;chrX_12502974_12503073 90.00 90.38 84.38 87.62 90.24 83.33 90.54 88.30 92.00 86.15 83.78 93.64 90.57 92.45 88.24 91.75 93.94 90.38 86.59 89.26 100.00 89.33 90.91 95.92 93.18 91.30 84.21 92.16 89.47 94.51 89.81 90.00 87.50 87.96 82.98 94.23 94.55 80.00 89.47 88.27 89.53 89.08 94.74 84.93 93.14 91.89 94.59 89.00 90.00 85.71 90.00 92.00 88.57 95.00 84.88 83.05 86.84 93.63 K intron_retention Nopp140,I_chr3L_21828330_21828566,I_chr3L_21828986_21829082 chr3L + chr3L_21827930_21828566 chr3L_21827929_21827930;chr3L_21828566_21828567 chr3L_21827465_21827929;chr3L_21828567_21828666 0.00 0.00 0.00 0.00 0.00 0.00 1.14 1.77 0.75 0.00 0.00 0.76 0.00 1.69 0.00 0.00 0.00 0.00 0.00 1.46 0.00 0.00 0.87 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 1.00 0.79 0.00 0.00 0.00 0.00 0.87 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.50 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD RpS9,E_chr3L_9503090_9504155,E_chr3L_9503259_9504163,I_chr3L_9504402_9504516 chr3L - chr3L_9503259_9503564 chr3L_9503259_9503381 chr3L_9503159_9503258;chr3L_9503565_9503751 1.00 0.92 0.62 0.80 0.66 0.54 0.88 0.73 0.62 1.17 0.74 0.71 0.77 0.68 0.47 0.50 0.85 0.81 0.55 0.54 0.65 0.95 1.67 1.74 1.50 0.60 1.89 3.69 1.02 1.66 5.03 1.05 0.86 0.63 1.97 1.52 1.25 1.34 1.54 1.39 1.14 0.74 0.59 1.39 1.40 1.37 1.32 1.00 1.45 1.65 2.47 1.80 0.64 1.57 0.80 1.81 2.19 0.19 N intron_retention Rip11,E_chrX_18532733_18533695,RI_chrX_18530353_18530870,RI_chrX_18530742_18530870,RI_chrX_18544139_18544185 chrX - chrX_18530338_18530646 chrX_18530337_18530338;chrX_18530646_18530647 chrX_18530253_18530337;chrX_18530647_18530741 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG14642,CG34305 chr3R - chr3R_67810_67879 chr3R_67809_67810;chr3R_67879_67880 chr3R_67700_67809;chr3R_67880_67958 20.61 14.29 22.22 42.86 NA 35.71 NA 33.33 22.22 20.00 NA 33.33 NA 30.77 33.33 20.00 NA 13.33 46.15 25.00 36.36 31.82 18.75 17.95 3.70 NA 21.21 23.08 15.00 16.00 10.75 7.69 22.22 28.57 23.81 16.67 10.00 18.75 8.89 18.37 25.00 33.33 NA 4.35 17.65 16.67 11.76 17.24 19.35 20.00 23.81 22.22 12.50 23.81 23.53 22.58 0.00 25.00 K intron_retention prominin-like,I_chr3L_3121200_3123087 chr3L - chr3L_3117257_3117833 chr3L_3117256_3117257;chr3L_3117833_3117834 chr3L_3117083_3117256;chr3L_3117834_3117973 22.22 22.22 NA 10.64 33.33 NA 38.89 20.51 25.00 NA 4.76 12.50 NA NA 14.29 NA 19.05 NA 14.29 18.92 10.53 53.85 12.77 22.22 25.00 14.29 24.14 58.33 5.00 38.46 23.53 NA 50.00 33.33 NA 20.00 18.18 22.22 30.00 42.86 20.00 29.63 NA 28.57 NA 13.33 10.53 NA 20.69 NA 21.74 NA 26.32 0.00 30.77 18.75 23.08 50.00 K intron_retention CG5594,CG2812 chr2R + chr2R_19801222_19801280 chr2R_19801221_19801222;chr2R_19801280_19801281 chr2R_19801065_19801221;chr2R_19801281_19801540 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chrX_19573364_19573474,CG14227 chrX - chrX_19582297_19582364 chrX_19582296_19582297;chrX_19582364_19582365 chrX_19581849_19582296;chrX_19582365_19582498 95.00 88.89 100.00 100.00 88.89 83.33 100.00 93.75 95.00 NA NA 94.12 NA 90.91 90.91 97.37 100.00 100.00 90.91 88.89 100.00 100.00 95.24 100.00 100.00 90.91 94.12 100.00 90.91 94.44 100.00 100.00 100.00 100.00 91.67 100.00 95.00 90.91 92.31 95.83 100.00 85.71 100.00 78.95 95.00 90.00 100.00 100.00 95.45 78.95 100.00 100.00 NA 88.89 92.86 91.67 100.00 92.31 K intron_retention RpL22,noncoding_21234,snoRNA:Psi18S-531,snoRNA:Psi28S-2179 chrX - chrX_657025_657473 chrX_657024_657025;chrX_657473_657474 chrX_656593_657024;chrX_657474_657843 30.43 33.33 28.57 40.43 33.33 50.00 65.62 27.78 23.64 42.31 47.37 34.15 46.43 28.57 36.67 20.00 43.75 25.00 53.33 30.16 42.86 28.33 16.13 30.00 33.33 41.38 31.71 53.16 41.67 26.09 37.50 28.57 36.00 26.83 34.62 26.83 16.00 27.27 26.53 30.43 40.00 36.73 29.17 20.00 33.33 25.49 26.53 33.33 30.36 13.71 35.29 20.00 30.43 29.17 31.03 26.32 30.30 42.86 K intron_retention CG11448,I_chrX_1288748_1289115,RI_chrX_1289405_1289590 chrX + chrX_1289405_1289585 chrX_1289404_1289405;chrX_1289585_1289586 chrX_1289305_1289404;chrX_1289586_1289941 90.24 93.75 91.67 90.00 NA NA 100.00 84.00 92.31 100.00 100.00 86.96 90.91 91.67 90.91 86.67 88.89 90.91 88.89 84.00 100.00 80.00 85.19 95.24 76.92 58.33 80.95 91.67 94.74 95.24 93.33 95.45 88.89 86.36 91.30 90.00 90.48 92.31 90.00 82.50 96.30 84.00 NA 81.82 77.27 88.24 92.86 81.58 87.50 72.73 94.12 92.31 61.11 93.75 80.00 93.33 94.44 74.07 K multi_cassette CG14995,I_chr3L_4095875_4097205,I_chr3L_4096047_4096903 chr3L - chr3L_4095875_4097506 chr3L_4095875_4095971;chr3L_4096068_4096903;chr3L_4096979_4097506 chr3L_4095972_4096067;chr3L_4096904_4096978 chr3L_4095775_4095874;chr3L_4097507_4097804 100.00 100.00 100.00 100.00 83.33 100.00 NA 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 92.86 100.00 94.44 90.48 93.75 80.00 100.00 90.91 87.50 100.00 100.00 83.33 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 93.33 NA 92.86 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 91.67 100.00 K intron_retention I_chr2R_8821104_8821171,CG13322,I_chr2R_8823775_8823829 chr2R - chr2R_8823766_8823817 chr2R_8823765_8823766;chr2R_8823817_8823818 chr2R_8823675_8823765;chr2R_8823818_8824025 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 98.15 100.00 94.44 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 95.45 96.15 97.44 100.00 100.00 100.00 100.00 100.00 100.00 96.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 97.62 100.00 92.86 100.00 100.00 100.00 94.44 100.00 K cassette CG17698 chr3L + chr3L_23731285_23739289 chr3L_23731285_23739123;chr3L_23739193_23739289 chr3L_23739124_23739192 chr3L_23731166_23731284;chr3L_23739290_23739644 8.33 NA NA NA NA NA 4.76 15.38 NA NA NA NA NA NA NA 9.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.33 14.29 NA NA NA NA NA NA NA NA NA NA 7.69 NA NA 6.25 16.67 NA NA NA NA NA NA NA NA 6.25 K intron_retention CG9372 chr3L + chr3L_19600082_19600140 chr3L_19600081_19600082;chr3L_19600140_19600141 chr3L_19599933_19600081;chr3L_19600141_19600277 3.03 2.65 1.34 2.62 3.27 3.10 0.67 2.46 2.75 4.55 3.23 2.58 1.88 3.03 1.92 2.02 1.35 3.06 2.02 3.48 0.73 3.85 3.90 2.41 5.93 3.18 4.06 0.00 5.06 2.56 5.36 3.87 4.12 2.29 4.05 5.74 1.42 2.62 2.91 2.48 3.62 2.76 2.67 1.52 2.34 2.69 3.21 3.40 3.22 3.21 4.20 3.07 3.92 3.70 1.94 4.43 4.02 3.02 K intron_retention Rpb4 chr3R - chr3R_14079178_14079247 chr3R_14079177_14079178;chr3R_14079247_14079248 chr3R_14078997_14079177;chr3R_14079248_14079364 5.50 NA NA 15.38 NA NA 10.53 0.00 9.09 NA NA 0.00 NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA NA 0.00 NA 10.00 NA NA NA NA NA NA 15.00 0.00 0.00 NA NA NA 14.29 0.00 NA NA K intron_retention CG7843,I_chr2R_1972736_1972822 chr2R - chr2R_1972525_1972590 chr2R_1972524_1972525;chr2R_1972590_1972591 chr2R_1972352_1972524;chr2R_1972591_1972735 36.03 40.00 NA NA NA NA NA NA 37.50 23.08 NA 56.25 30.77 NA NA NA NA NA NA 50.00 NA 37.50 33.33 42.86 26.67 NA 53.85 50.00 23.81 39.13 NA 50.00 41.67 43.75 38.46 30.00 26.09 11.11 28.00 26.09 38.46 51.72 36.36 NA 36.84 20.00 29.41 31.58 35.29 NA 28.57 NA 33.33 NA 26.67 35.71 NA 52.94 K intron_retention CG8678,RI_chr2L_21213167_21213218,RI_chr2L_21213167_21213227 chr2L - chr2L_21213167_21213222 chr2L_21213166_21213167;chr2L_21213222_21213223 chr2L_21213067_21213166;chr2L_21213223_21213318 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 1.72 0.00 0.00 0.00 9.09 0.00 5.71 1.72 0.00 0.00 0.00 0.00 0.00 3.12 0.00 3.57 0.00 0.00 1.33 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 1.33 0.00 1.75 0.00 0.00 2.70 2.80 1.11 0.00 0.00 0.00 0.00 0.00 2.25 4.76 K jcn_only_AA B4,I_chr2L_13513474_13549131,I_chr2L_13547133_13549131,I_chr2L_13547162_13547692,I_chr2L_13547304_13549131 chr2L - chr2L_13547162_13549131;chr2L_13547133_13549131 chr2L_13547304_13549131 chr2L_13549132_13549231;chr2L_13547062_13547132 24.32 29.03 30.00 17.07 17.39 33.33 30.30 27.50 22.73 20.83 NA 40.00 NA NA 48.15 31.82 48.00 NA 31.25 11.32 20.83 13.51 21.43 10.91 15.15 28.00 23.08 22.50 16.22 15.09 33.33 NA 32.86 33.33 20.00 24.32 18.92 25.71 19.23 13.79 23.26 26.19 31.82 17.78 25.00 16.39 7.89 14.58 31.91 20.00 20.51 26.09 NA 25.81 39.02 36.11 31.25 25.64 K jcn_only_AD CtBP chr3R + chr3R_8847030_8847141 chr3R_8847039_8847141 chr3R_8847142_8847364;chr3R_8846898_8847029 29.95 28.91 31.62 29.68 34.82 24.82 30.16 32.97 29.55 22.92 20.90 24.57 22.48 25.86 30.86 32.89 31.90 28.06 27.64 34.12 25.23 25.07 39.26 24.59 29.31 30.32 21.57 20.41 29.95 26.36 31.86 30.21 26.29 32.47 40.00 21.90 27.63 27.88 31.98 32.00 29.66 33.71 30.89 25.69 25.38 36.47 31.50 32.37 30.58 33.11 33.91 30.85 24.44 30.28 21.85 30.00 31.58 27.78 K jcn_only_AD G-salpha60A chr2R + chr2R_19830338_19831752;chr2R_19830125_19831752 chr2R_19830349_19831752 chr2R_19831753_19832263;chr2R_19830091_19830124 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 NA 1.96 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA K intron_retention BM-40-SPARC,I_chr3R_22696095_22696231,I_chr3R_22696095_22696291,I_chr3R_22696095_22697413 chr3R - chr3R_22696095_22697647 chr3R_22696094_22696095;chr3R_22697647_22697648 chr3R_22695995_22696094;chr3R_22697648_22697767 0.32 0.21 0.32 0.48 0.15 0.40 0.56 0.35 0.23 0.39 0.28 0.34 0.32 0.32 0.35 0.37 0.29 0.25 0.24 0.47 0.35 0.26 0.23 0.28 0.66 0.51 0.31 0.17 0.90 0.18 0.53 0.44 0.18 0.32 0.38 0.57 0.10 0.14 0.17 0.62 0.62 0.33 0.33 0.12 0.57 0.38 0.19 1.64 0.38 0.13 0.40 0.17 0.20 0.22 0.62 0.15 0.11 0.47 K intron_retention CG6191 chr2R - chr2R_9468842_9468998 chr2R_9468841_9468842;chr2R_9468998_9468999 chr2R_9468292_9468841;chr2R_9468999_9469183 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 K jcn_only_AA dre4,I_chr3L_1875590_1875651,F_chr3L_1877432_1877517 chr3L - chr3L_1875587_1875651 chr3L_1875590_1875651 chr3L_1875652_1875751;chr3L_1875490_1875586 0.00 0.00 0.00 0.00 0.00 0.76 0.30 0.00 0.21 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.56 0.00 0.00 0.00 0.40 0.00 0.89 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.50 0.40 0.65 0.00 0.91 0.00 0.00 0.00 0.00 K intron_retention RI_chr3R_205772_205830,Cont,I_chr3R_207254_207600 chr3R + chr3R_211716_211771 chr3R_211715_211716;chr3R_211771_211772 chr3R_210843_211715;chr3R_211772_211940 0.00 2.22 0.00 8.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 5.00 0.00 0.00 4.44 1.06 0.00 0.00 4.29 1.89 10.81 2.38 10.34 9.09 3.23 3.23 0.00 8.00 0.00 0.00 0.00 11.76 1.49 0.00 6.85 0.00 0.00 2.60 2.94 1.54 0.00 3.28 9.30 0.00 3.95 5.45 0.00 6.12 0.00 0.00 0.00 0.00 1.37 0.00 K intron_retention CG9921,RI_chrX_16226156_16227407 chrX - chrX_16225759_16225841 chrX_16225758_16225759;chrX_16225841_16225842 chrX_16225427_16225758;chrX_16225842_16226114 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.26 0.00 0.00 0.00 2.60 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.58 0.00 0.00 1.94 0.00 0.00 2.27 1.28 0.99 0.00 0.00 0.00 0.00 0.00 0.86 0.84 0.00 K alternative_donor CG6509 chr2L - chr2L_11510851_11511178 chr2L_11510851_11511055 chr2L_11510596_11510850;chr2L_11511179_11511544 2.38 1.54 3.77 1.25 2.38 2.70 1.72 1.18 1.65 0.00 5.71 3.19 0.00 1.92 0.00 2.44 0.00 2.44 1.82 2.70 5.00 3.70 2.96 2.11 2.82 2.38 2.04 4.00 9.72 3.23 1.69 2.04 5.80 1.19 7.02 2.38 2.86 2.33 2.63 8.82 2.44 0.93 0.00 2.06 6.67 1.67 1.67 4.35 3.23 3.45 1.22 4.08 1.67 3.57 1.69 1.61 1.43 3.92 K jcn_only_AD skd chr3L - chr3L_21018649_21020285;chr3L_21018649_21019229;chr3L_21018649_21020239 chr3L_21018649_21020395 chr3L_21018052_21018648;chr3L_21020396_21020501 68.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 68.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD ps,I_chr3R_5243723_5265067,I_chr3R_5243723_5270765,noncoding_15575,I_chr3R_5245770_5265067,I_chr3R_5245770_5269732,I_chr3R_5269733_5270765 chr3R + chr3R_5243723_5257753 chr3R_5245770_5257753 chr3R_5257754_5258205;chr3R_5243705_5243722 92.73 90.91 85.00 92.73 NA 90.00 90.00 89.36 92.73 NA 86.96 100.00 95.65 88.00 96.15 90.32 NA 93.10 82.76 82.98 93.55 81.82 97.73 NA 100.00 81.82 100.00 NA NA 100.00 100.00 NA NA 92.68 NA 96.30 93.75 NA 95.00 96.77 NA 83.33 90.91 93.94 NA NA NA NA 91.38 NA 96.88 NA NA NA 92.31 NA NA NA K intron_retention CG4294 chr2R - chr2R_18489321_18489452 chr2R_18489320_18489321;chr2R_18489452_18489453 chr2R_18489035_18489320;chr2R_18489453_18489731 25.00 25.00 20.00 24.14 NA NA 23.08 43.48 37.04 25.00 NA 24.24 35.71 40.00 37.50 30.77 22.22 23.53 26.67 22.00 NA 50.00 30.00 26.09 35.29 50.00 27.27 25.00 30.77 35.00 27.78 13.79 23.08 21.05 30.77 25.00 16.00 14.29 21.74 21.28 23.08 21.88 NA 29.41 29.17 25.93 29.41 23.40 20.00 19.23 20.83 15.00 NA NA 31.58 28.57 25.00 21.74 K alternative_donor CG4774,RI_chr3R_21511706_21511778 chr3R - chr3R_21511706_21512036 chr3R_21511706_21511778 chr3R_21511606_21511705;chr3R_21512037_21512588 0.00 0.00 0.00 1.27 0.00 0.00 0.00 1.23 0.00 0.00 0.00 1.00 2.38 2.38 2.86 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 2.90 2.38 3.57 0.00 0.00 2.04 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 1.01 1.72 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor apt chr2R + chr2R_19485154_19485218 chr2R_19485154_19485215 chr2R_19484907_19485153;chr2R_19485219_19487028 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 K alternative_donor CG11367,CG32454,I_chr3L_22724590_22725116 chr3L + chr3L_22722194_22725116 chr3L_22724590_22725116 chr3L_22725117_22725134;chr3L_22721249_22722193 11.11 7.69 20.00 33.33 12.50 14.29 20.00 8.33 7.69 10.00 10.00 9.09 NA 14.29 7.14 33.33 12.50 33.33 12.50 9.52 NA 8.70 7.69 9.09 16.67 20.00 14.29 33.33 22.22 12.50 22.22 11.11 18.75 10.00 12.50 33.33 8.70 8.33 8.70 11.11 16.67 5.26 14.29 10.00 20.00 13.33 11.11 15.38 25.00 7.69 5.56 7.69 20.00 6.67 8.33 9.09 10.00 10.00 K intron_retention CG1753,noncoding_25029 chrX + chrX_20916377_20918214 chrX_20916376_20916377;chrX_20918214_20918215 chrX_20916291_20916376;chrX_20918215_20918439 0.00 0.00 0.00 1.06 0.88 0.00 0.00 0.00 1.46 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 2.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 3.45 K intron_retention Cyp28d1 chr2L + chr2L_5211062_5211190 chr2L_5211061_5211062;chr2L_5211190_5211191 chr2L_5210954_5211061;chr2L_5211191_5211821 0.00 NA NA 0.00 NA NA 0.00 0.00 3.85 NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA 5.56 NA NA 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA 4.76 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA K intron_retention CG13298 chr3L - chr3L_6185810_6185875 chr3L_6185809_6185810;chr3L_6185875_6185876 chr3L_6185218_6185809;chr3L_6185876_6185994 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 4.72 6.25 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 N jcn_only_AA CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261460_261555;chr4_261460_263086 chr4_261460_263113 chr4_261360_261459;chr4_263114_263305 12.31 NA NA 14.29 NA NA 9.52 4.88 12.31 NA NA 16.13 NA 0.00 NA 25.64 NA NA 11.11 9.52 NA NA NA NA NA NA NA NA NA NA 28.00 NA NA 12.12 NA NA NA NA NA 9.09 NA 17.07 NA NA NA NA NA NA 18.42 NA NA NA NA NA 29.17 NA NA NA K cassette CG33107 chr3R - chr3R_18409246_18409420 chr3R_18409246_18409316;chr3R_18409364_18409420 chr3R_18409317_18409363 chr3R_18409093_18409245;chr3R_18409421_18409651 81.48 84.62 91.67 95.00 87.50 87.50 95.45 84.21 81.48 85.71 73.33 78.95 90.00 77.78 100.00 85.71 87.50 NA 91.67 95.24 77.78 81.25 52.94 55.56 60.00 60.00 69.23 91.67 29.41 75.00 84.62 NA 35.71 94.12 87.50 87.50 90.00 72.73 64.29 61.11 69.23 78.95 77.78 91.67 80.00 73.68 87.50 100.00 81.82 68.18 73.33 66.67 45.45 72.73 75.00 93.33 84.62 93.33 K alternative_acceptor noncoding_4282,RI_chr2L_22131700_22140718 chr2L + chr2L_22131700_22132232 chr2L_22131700_22132117 chr2L_22131600_22131699;chr2L_22132233_22132382 85.71 69.23 91.67 87.10 NA 88.89 88.00 86.67 95.65 NA 81.82 83.33 100.00 91.67 66.67 89.74 90.00 66.67 77.78 88.24 60.00 NA 91.67 69.23 NA 88.89 69.23 85.71 NA NA 71.43 71.43 NA 84.00 81.82 87.50 NA NA NA 85.71 100.00 94.12 92.31 75.00 NA 83.33 60.00 100.00 87.10 68.75 75.00 88.89 NA 58.33 78.57 81.82 66.67 88.89 K intron_retention lilli chr2L + chr2L_2945793_2946708 chr2L_2945792_2945793;chr2L_2946708_2946709 chr2L_2945656_2945792;chr2L_2946709_2947435 33.33 NA NA 45.45 NA NA 33.33 33.33 17.65 NA NA 33.33 NA NA NA NA NA NA NA NA NA 26.32 NA NA NA NA NA NA 15.38 NA NA NA 35.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA NA NA K alternative_acceptor I_chr2R_2539027_2539493,Opbp chr2R + chr2R_2540827_2540888 chr2R_2540827_2540877 chr2R_2540768_2540826;chr2R_2540889_2541565 88.89 NA 88.89 92.86 NA NA 88.89 90.91 92.31 NA NA 75.00 NA NA 88.89 100.00 NA 70.00 NA 85.00 NA 87.50 77.78 90.91 100.00 NA 100.00 NA 90.91 NA 88.89 NA NA 100.00 NA NA 81.25 NA NA 90.91 NA 92.31 NA NA 88.89 NA NA NA 87.50 87.50 NA NA NA NA 100.00 NA 87.50 87.50 K intron_retention Ctr1A,I_chrX_6557804_6559032,I_chrX_6558480_6559032 chrX + chrX_6555835_6556272 chrX_6555834_6555835;chrX_6556272_6556273 chrX_6555724_6555834;chrX_6556273_6556374 21.37 NA 20.00 36.36 NA NA 53.33 33.33 12.00 NA NA NA NA NA 14.29 22.73 NA 42.86 38.46 28.57 NA 0.00 36.36 14.29 NA NA 38.46 NA NA NA 23.08 NA 11.11 20.00 0.00 31.25 NA NA NA 17.65 NA 27.78 NA 37.50 NA 27.78 NA 5.56 20.00 NA 14.29 NA 5.00 NA 25.00 NA 6.67 12.20 K intron_retention CG6841 chr3L + chr3L_18898851_18898917 chr3L_18898850_18898851;chr3L_18898917_18898918 chr3L_18898759_18898850;chr3L_18898918_18900277 96.15 92.86 100.00 97.56 100.00 92.31 96.55 97.30 94.59 100.00 93.33 96.43 100.00 92.31 100.00 100.00 94.12 100.00 90.00 95.74 100.00 100.00 96.15 96.55 94.12 94.74 NA 91.30 96.88 95.83 95.45 100.00 96.55 100.00 100.00 94.12 96.43 95.00 95.24 94.12 100.00 100.00 93.75 100.00 88.24 100.00 94.44 100.00 92.86 94.44 95.45 88.24 80.00 NA 96.30 94.74 83.33 96.30 K intron_retention CG34422,I_chrX_18743191_18743912 chrX + chrX_18749085_18749159 chrX_18749084_18749085;chrX_18749159_18749160 chrX_18743916_18749084;chrX_18749160_18749387 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.57 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 1.92 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA mrj,I_chr2R_12093585_12095708,I_chr2R_12093585_12096954,I_chr2R_12093585_12097211,I_chr2R_12093585_12097256,I_chr2R_12093585_12097522,I_chr2R_12093733_12097526,RI_chr2R_12093733_12108627,tRNA:CR30237,I_chr2R_12108697_12109174 chr2R - chr2R_12093585_12097694 chr2R_12093733_12097694 chr2R_12097695_12097877 14.08 14.00 18.46 26.47 15.91 8.82 17.86 21.05 17.97 NA 8.89 11.93 18.64 18.75 18.75 12.82 16.44 4.26 14.08 15.93 6.12 17.14 8.20 1.96 7.32 23.08 15.87 NA 12.00 16.22 18.52 28.00 NA 20.34 11.76 29.17 7.32 13.64 10.00 9.76 25.00 13.77 22.45 7.50 14.29 13.95 15.94 4.17 22.73 5.00 12.31 7.69 NA 9.52 18.18 6.45 9.30 20.83 K intron_retention vig2 chr3R + chr3R_20949206_20949262 chr3R_20949205_20949206;chr3R_20949262_20949263 chr3R_20949203_20949205;chr3R_20949263_20949281 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.77 100.00 100.00 100.00 98.57 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 100.00 96.88 100.00 100.00 98.31 98.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Hel25E chr2L - chr2L_5541091_5541152 chr2L_5541090_5541091;chr2L_5541152_5541153 chr2L_5540972_5541090;chr2L_5541153_5541336 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention SdhA,I_chr2R_15283283_15283411,I_chr2R_15283319_15283369 chr2R - chr2R_15283283_15283415 chr2R_15283282_15283283;chr2R_15283415_15283416 chr2R_15283219_15283282;chr2R_15283416_15283469 34.48 25.71 31.58 28.00 25.93 42.86 51.22 37.93 20.51 26.32 22.22 30.61 41.18 42.11 30.77 18.42 28.00 35.00 20.00 31.03 37.50 21.05 32.08 31.58 29.17 50.00 38.10 54.55 44.00 36.84 36.84 34.48 37.50 27.59 30.00 58.06 30.19 27.03 39.47 64.71 58.33 22.81 38.10 36.67 17.65 52.38 36.36 28.57 25.49 31.03 38.89 34.62 36.84 33.33 39.13 50.00 29.03 40.00 K intron_retention Smr,C_chrX_12580865_12625568,REI_chrX_12635675_12636351 chrX - chrX_12604753_12604830 chrX_12604752_12604753;chrX_12604830_12604831 chrX_12604524_12604752;chrX_12604831_12605245 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon lola,I_chr2R_6375932_6376866,RI_chr2R_6376649_6376866,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6375932_6376866 chr2R_6376649_6376866 chr2R_6374902_6375931 chr2R_6376160_6376648 chr2R_6376867_6376966 66.67 NA NA NA NA NA NA 60.00 60.00 NA NA 0.00 NA 66.67 NA NA NA NA 66.67 75.00 NA NA 50.00 NA NA NA NA NA 66.67 50.00 NA NA NA NA NA NA NA 66.67 0.00 80.00 NA 66.67 NA 66.67 100.00 NA 66.67 NA 50.00 66.67 75.00 NA 50.00 NA NA NA NA 75.00 K jcn_only_AA Usp7,I_chrX_11919055_11919146,I_chrX_11922059_11922456 chrX - chrX_11919091_11919146;chrX_11919055_11919146 chrX_11919079_11919146 chrX_11919147_11919211;chrX_11918989_11919054 21.01 9.48 20.81 18.53 21.10 23.01 29.41 19.47 18.08 23.53 21.11 23.71 21.01 20.72 18.23 20.95 21.19 23.08 23.43 25.00 18.69 29.23 5.59 23.26 28.43 23.61 13.33 11.25 30.86 17.86 23.08 22.22 19.02 14.50 24.49 31.37 17.21 22.68 16.30 18.59 36.17 20.12 20.33 15.71 21.25 21.17 18.66 30.16 23.05 13.83 19.01 17.95 20.69 21.25 17.74 21.18 18.60 27.97 K alternative_donor RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12914849_12916177;chr2R_12914845_12916177;chr2R_12914941_12916177 chr2R_12914834_12916177 chr2R_12916178_12916526;chr2R_12914830_12914833 20.00 NA 14.29 28.57 NA 14.29 22.22 16.67 28.00 NA NA 27.27 33.33 20.00 33.33 19.05 16.67 NA 25.00 NA NA 11.76 30.00 NA 14.29 NA NA NA 45.45 NA 16.67 NA 33.33 11.11 10.00 33.33 NA NA NA 27.27 NA 7.69 11.11 12.50 NA 44.44 NA 34.78 20.00 NA 11.11 NA NA NA 10.00 NA NA 36.36 K intron_retention CG8594 chr2R + chr2R_8462483_8462546 chr2R_8462482_8462483;chr2R_8462546_8462547 chr2R_8462399_8462482;chr2R_8462547_8462813 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG12030,Rev1 chr3L + chr3L_656231_656292 chr3L_656230_656231;chr3L_656292_656293 chr3L_655948_656230;chr3L_656293_656716 6.35 8.33 3.85 9.46 2.38 5.71 7.89 7.78 12.90 13.16 5.26 7.79 13.33 10.42 13.16 8.24 15.09 5.00 10.91 10.71 5.00 5.26 1.25 6.74 2.44 8.51 5.49 8.89 3.77 6.52 16.98 9.09 6.35 14.29 6.12 5.88 2.63 0.00 7.14 3.17 5.56 9.00 10.64 3.12 0.00 5.08 4.76 4.71 7.45 0.00 2.50 6.90 0.00 0.00 9.09 0.00 6.45 0.00 K jcn_only_AD CG32702,C_chrX_9453782_9453856,I_chrX_9468866_9473514 chrX - chrX_9453782_9453856 chrX_9453782_9453851 chrX_9453682_9453781;chrX_9453857_9453956 85.71 NA NA 80.95 NA NA 85.71 92.31 90.48 NA 85.71 84.00 NA NA NA NA NA 84.62 NA 77.14 NA 91.67 NA NA NA NA NA NA NA NA NA NA NA 96.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD MB8.chr3R.pasa.66,CG1105,I_chr3R_2892020_2892122,RI_chr3R_2892020_2892252,I_chr3R_2892305_2892645 chr3R - chr3R_2892020_2892122;chr3R_2892020_2892252 chr3R_2892020_2892645 chr3R_2891920_2892019;chr3R_2892646_2892745 97.83 97.83 100.00 100.00 100.00 93.62 96.92 100.00 100.00 97.06 100.00 98.59 97.22 100.00 100.00 97.92 97.06 100.00 97.37 100.00 96.77 98.36 95.89 100.00 100.00 100.00 94.12 100.00 97.87 95.56 94.34 92.68 94.44 96.25 93.48 97.96 96.77 96.61 98.08 93.06 100.00 97.89 100.00 96.08 92.50 95.24 100.00 95.83 96.51 95.35 98.75 97.06 93.55 94.12 100.00 95.92 98.46 100.00 K cassette gry,I_chr3L_3202203_3209859,I_chr3L_3202207_3209287 chr3L + chr3L_3202203_3209859 chr3L_3202203_3209287;chr3L_3209797_3209859 chr3L_3209288_3209796 chr3L_3202107_3202202;chr3L_3209860_3209959 99.29 98.82 100.00 93.52 98.55 100.00 99.08 99.21 100.00 100.00 100.00 99.29 100.00 98.65 98.99 99.00 100.00 98.81 100.00 97.91 98.55 99.31 98.46 99.15 100.00 98.72 99.19 100.00 99.00 100.00 100.00 98.72 99.38 99.20 100.00 98.81 100.00 100.00 99.29 98.90 100.00 99.45 100.00 100.00 98.13 97.48 100.00 99.21 99.37 99.02 100.00 100.00 100.00 98.63 100.00 98.89 98.94 99.18 K jcn_only_AD sbb,I_chr2R_14193641_14243004,noncoding_7736,RI_chr2R_14243561_14244282,I_chr2R_14243561_14244715 chr2R - chr2R_14243561_14244715;chr2R_14243561_14244596 chr2R_14243561_14244642 chr2R_14243461_14243560;chr2R_14244716_14244766 57.55 NA NA NA NA NA NA NA 56.00 NA NA NA NA NA NA 72.41 NA NA NA 59.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 54.17 NA NA NA NA NA NA NA NA NA K intron_retention crm,I_chrX_2635555_2635621,I_chrX_2636831_2636971 chrX - chrX_2631447_2631502 chrX_2631446_2631447;chrX_2631502_2631503 chrX_2629870_2631446;chrX_2631503_2631706 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 4.00 0.00 13.16 2.27 5.41 10.00 0.00 19.44 0.00 45.83 0.00 12.50 0.00 0.00 5.00 0.00 0.00 0.00 0.00 1.92 4.26 0.00 2.38 0.00 0.00 0.00 NA 0.00 8.33 3.92 0.00 0.00 0.00 NA 9.09 0.00 0.00 12.50 0.00 K intron_retention CG34183,CG5924 chr2L - chr2L_9890484_9890541 chr2L_9890483_9890484;chr2L_9890541_9890542 chr2L_9890386_9890483;chr2L_9890542_9890622 0.00 NA 0.00 0.00 NA 0.00 19.05 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 5.88 2.86 NA NA 0.00 0.00 NA 20.00 NA NA 41.18 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 7.50 22.22 0.00 25.00 12.50 3.03 0.00 0.00 4.88 0.00 0.00 NA NA 0.00 0.00 4.76 0.00 0.00 1.56 K jcn_only_AA CG3760,CG3770,CG12851 chr2R + chr2R_20826741_20826793;chr2R_20826741_20826799 chr2R_20826741_20826796 chr2R_20826672_20826740;chr2R_20826800_20826860 10.08 5.39 7.80 5.04 14.41 14.18 5.94 13.70 12.15 10.40 11.88 9.39 1.35 9.89 18.11 6.19 19.23 10.64 11.69 10.08 12.73 8.99 12.39 8.89 8.75 10.48 10.61 10.00 12.90 10.43 13.19 10.06 10.55 8.65 13.19 12.00 10.74 5.41 9.03 6.74 8.13 12.67 14.29 7.91 10.58 9.01 9.86 8.58 14.17 8.88 7.98 8.15 7.62 8.15 11.38 10.57 8.75 11.62 K intron_retention dpr3 chr2L - chr2L_2065744_2066519 chr2L_2065743_2065744;chr2L_2066519_2066520 chr2L_2065611_2065743;chr2L_2066520_2066597 0.00 0.00 0.00 5.21 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9821,I_chr3R_4644986_4645248,I_chr3R_4644986_4645577,I_chr3R_4644986_4645648,I_chr3R_4644986_4646263,RI_chr3R_4644986_4646264,RI_chr3R_4645903_4646033 chr3R - chr3R_4644986_4645649 chr3R_4644985_4644986;chr3R_4645649_4645650 chr3R_4644886_4644985;chr3R_4645650_4645677 1.40 1.44 2.34 1.95 2.11 0.00 2.65 2.44 1.77 0.00 0.00 1.92 2.70 1.54 1.20 1.69 1.38 1.40 1.46 1.85 1.89 7.46 2.39 3.10 2.27 4.17 6.43 11.93 1.67 0.00 1.57 0.00 0.00 2.21 0.00 0.97 1.02 0.00 1.92 1.92 0.00 1.00 1.35 0.65 0.00 0.00 0.00 0.00 1.54 0.00 1.80 0.00 0.00 0.00 1.32 0.00 0.00 0.00 K intron_retention CG4820 chr3R + chr3R_7043288_7043345 chr3R_7043287_7043288;chr3R_7043345_7043346 chr3R_7042515_7043287;chr3R_7043346_7043417 0.00 NA NA 23.08 NA NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA 11.11 3.85 0.00 NA 4.76 6.67 NA NA NA NA NA 0.00 0.00 NA 0.00 6.25 0.00 5.26 NA 0.00 NA NA 0.00 0.00 NA NA 0.00 4.76 0.00 NA NA 0.00 NA 0.00 0.00 0.00 K intron_retention par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350437_15351814 chr2R_15350436_15350437;chr2R_15351814_15351815 chr2R_15350337_15350436;chr2R_15351815_15351914 88.89 NA NA NA NA NA 88.89 68.75 86.67 NA NA NA NA NA NA 91.67 NA NA NA 100.00 NA 90.00 NA NA NA 88.89 NA NA NA NA NA NA NA 76.92 NA 100.00 NA NA NA NA NA 90.00 87.50 NA NA NA NA NA 84.62 NA NA NA NA NA NA NA NA NA N jcn_only_AD CG10353,I_chrX_11775936_11778830,I_chrX_11778617_11778830,RI_chrX_11780885_11780988 chrX - chrX_11775936_11776058;chrX_11775936_11777220;chrX_11775936_11777133;chrX_11775936_11776142 chrX_11775936_11777234 chrX_11775836_11775935;chrX_11777235_11777654 0.64 0.00 0.00 0.00 2.17 0.00 1.27 0.00 0.78 0.00 0.00 0.00 2.22 1.61 0.00 2.25 0.00 0.00 0.00 0.62 1.82 4.44 1.20 1.52 1.85 0.00 3.85 0.00 1.41 1.59 1.83 0.00 0.00 1.79 0.00 2.27 4.81 0.00 1.43 1.65 0.00 1.69 1.89 0.00 0.00 0.00 0.00 0.64 0.77 0.00 2.00 0.00 1.96 2.50 1.61 4.76 0.00 0.00 N jcn_only_AA Rpn2,CG11897 chr3R + chr3R_24980396_24980472 chr3R_24980396_24980457 chr3R_24979418_24980395;chr3R_24980473_24981742 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 77.42 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention AcCoAS,I_chr3L_21265768_21265818,I_chr3L_21265768_21265914 chr3L - chr3L_21265768_21265822 chr3L_21265767_21265768;chr3L_21265822_21265823 chr3L_21265668_21265767;chr3L_21265823_21265918 0.00 5.56 0.00 2.41 0.00 0.00 0.00 2.22 0.91 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 4.17 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chrX_15680663_15680821,Rhp chrX + chrX_15687071_15687124 chrX_15687070_15687071;chrX_15687124_15687125 chrX_15686745_15687070;chrX_15687125_15687277 4.10 5.56 NA 0.00 0.00 5.88 0.00 NA 0.00 0.00 NA 6.06 NA NA 10.53 7.69 NA NA NA 16.67 NA 1.67 5.88 0.00 NA 11.76 0.00 10.26 0.00 0.00 13.04 NA NA 0.00 NA NA 3.85 8.00 4.35 0.00 0.00 5.41 NA 0.00 0.00 4.35 0.00 12.50 4.76 8.33 3.23 0.00 NA 0.00 10.00 6.45 12.50 NA K jcn_only_AD mthl3 chr2R - chr2R_13338538_13338593;chr2R_13338538_13340031;chr2R_13338538_13339957;chr2R_13338538_13340007 chr2R_13338538_13340067 chr2R_13338407_13338537;chr2R_13340068_13340078 0.00 4.76 0.00 8.82 NA NA 0.00 4.00 0.00 NA 4.76 6.25 0.00 0.00 5.00 0.00 0.00 4.17 11.11 0.00 0.00 0.00 NA NA NA NA 0.00 NA NA NA 5.88 NA NA 0.00 7.69 NA NA NA NA NA NA 2.56 4.00 NA NA 0.00 NA 4.76 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K multi_cassette CG11266,RI_chr2L_7033019_7034180,RI_chr2L_7033019_7034764,I_chr2L_7034274_7034764,I_chr2L_7034274_7035406,RI_chr2L_7034911_7035074,I_chr2L_7051093_7051366 chr2L + chr2L_7034274_7035406 chr2L_7034274_7034483;chr2L_7034694_7034764;chr2L_7034911_7035406 chr2L_7034484_7034693;chr2L_7034765_7034910 chr2L_7034211_7034273;chr2L_7035407_7035506 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 80.00 100.00 100.00 75.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor PpD3,CG8412,I_chr3R_5583152_5583200 chr3R + chr3R_5573653_5573896 chr3R_5573653_5573799 chr3R_5573643_5573652;chr3R_5573897_5574123 75.00 NA NA NA 83.33 NA 62.50 75.00 90.91 NA NA 66.67 NA 87.50 71.43 69.23 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 75.00 NA NA 69.23 NA NA NA NA NA NA NA 77.78 NA NA NA NA NA NA 78.57 NA NA NA NA NA NA NA NA NA K alternative_donor Mtch,RI_chr3L_184729_185366,I_chr3L_185367_185925 chr3L + chr3L_184682_184777;chr3L_184663_184777 chr3L_184670_184777 chr3L_184778_184854;chr3L_184654_184662 27.27 NA 22.22 20.00 NA 28.57 37.50 41.67 18.18 NA NA 25.00 NA 0.00 NA 42.86 33.33 28.57 37.50 33.33 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA 25.00 NA NA NA NA NA 22.22 NA 38.46 NA NA NA NA NA 11.11 27.27 NA NA NA NA NA 27.27 NA NA 27.27 K cassette noncoding_5243,I_chr2R_4553376_4563976,l(2)44DEa,I_chr2R_4553577_4562151,I_chr2R_4553817_4565934,I_chr2R_4554300_4563976,I_chr2R_4565692_4565934 chr2R + chr2R_4553376_4563976;chr2R_4554300_4563976;chr2R_4553817_4563976 chr2R_4554300_4562151,chr2R_4553817_4562151,chr2R_4553376_4562151;chr2R_4562377_4563976 chr2R_4562152_4562376 chr2R_4553371_4553375;chr2R_4563977_4564076 100.00 100.00 100.00 99.53 100.00 100.00 99.55 100.00 100.00 100.00 98.85 100.00 100.00 99.24 100.00 99.59 100.00 100.00 100.00 100.00 98.95 100.00 100.00 100.00 100.00 100.00 99.19 98.41 94.37 100.00 99.49 100.00 100.00 100.00 100.00 98.78 98.94 100.00 98.90 99.27 100.00 99.60 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 97.37 100.00 98.18 100.00 100.00 K intron_retention psidin,CG4854 chr3R + chr3R_15851648_15851707 chr3R_15851647_15851648;chr3R_15851707_15851708 chr3R_15851449_15851647;chr3R_15851708_15852207 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA nct,I_chr3R_20679262_20679308 chr3R + chr3R_20679262_20679308;chr3R_20679262_20679333 chr3R_20679262_20679324 chr3R_20679193_20679261;chr3R_20679334_20679393 97.27 97.82 97.27 97.54 99.28 95.74 98.04 97.33 98.18 100.00 98.18 97.06 98.41 98.47 98.19 96.45 98.56 95.29 97.26 96.85 99.44 96.39 96.43 95.36 98.10 97.37 96.89 96.00 95.74 97.71 92.09 97.66 95.22 98.70 99.24 94.20 94.46 97.20 97.02 96.00 96.10 98.05 99.23 97.89 95.27 98.83 95.56 98.00 99.10 95.29 96.62 94.85 97.10 98.00 97.77 96.99 97.29 96.36 K intron_retention Hr78,I_chr3L_21490089_21490390,CG33214 chr3L - chr3L_21488969_21489526 chr3L_21488968_21488969;chr3L_21489526_21489527 chr3L_21488699_21488968;chr3L_21489527_21489841 66.67 NA NA NA NA NA 45.45 70.00 68.75 NA NA 69.23 77.78 NA NA NA NA NA NA 57.14 NA NA NA NA NA NA NA NA NA NA NA NA 50.00 88.89 NA NA NA NA 63.64 60.00 NA 66.67 NA NA NA NA NA NA 69.23 NA NA NA NA NA 66.67 NA NA NA K jcn_only_AD I_chr3L_1494947_1496080,pUf68,cue chr3L - chr3L_1504321_1504387 chr3L_1504321_1504383 chr3L_1503987_1504320;chr3L_1504388_1505792 0.00 0.00 0.00 0.00 3.64 2.86 0.00 0.79 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 1.67 0.00 0.90 0.00 0.00 0.00 0.00 1.54 1.47 0.00 0.00 1.19 1.25 1.06 0.00 0.81 0.00 0.00 0.00 0.64 0.00 0.00 1.42 1.35 0.74 3.28 0.00 0.00 1.79 1.22 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3L_9707724_9708265,CG14174 chr3L + chr3L_9712522_9712585 chr3L_9712521_9712522;chr3L_9712585_9712586 chr3L_9712316_9712521;chr3L_9712586_9713641 23.32 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 31.25 NA NA NA 15.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor Npc1a chr2L - chr2L_10218890_10220868;chr2L_10218890_10220796;chr2L_10218890_10220692 chr2L_10218890_10220834 chr2L_10218779_10218889;chr2L_10220869_10220873 7.69 8.00 7.41 9.09 6.25 6.25 6.45 7.69 10.77 7.69 10.00 10.00 5.88 4.76 16.00 6.38 4.17 7.41 10.00 16.67 0.00 3.70 13.33 19.05 0.00 0.00 11.11 25.00 13.64 13.04 10.71 12.50 13.04 6.90 0.00 15.00 11.11 12.50 7.69 0.00 0.00 10.91 8.70 9.09 0.00 0.00 14.29 19.05 10.00 0.00 9.09 6.25 0.00 0.00 7.69 0.00 0.00 8.33 N alternative_donor CG17233,RI_chr3L_20232898_20232962 chr3L - chr3L_20233633_20234944;chr3L_20233633_20234418;chr3L_20233633_20234374 chr3L_20233633_20234218 chr3L_20232963_20233632;chr3L_20234945_20234989 14.29 18.18 20.00 18.75 11.11 12.50 14.29 26.32 10.71 0.00 12.50 19.05 16.67 11.11 15.38 23.53 22.22 10.00 18.18 12.82 22.22 35.71 16.67 8.33 18.18 11.11 7.69 25.00 11.11 6.67 14.29 11.11 18.75 11.11 20.00 9.09 13.33 16.67 15.38 13.04 9.09 17.39 22.22 14.29 18.18 14.29 11.11 15.00 20.83 25.00 14.29 20.00 9.09 0.00 13.33 18.18 20.00 9.52 K intron_retention Rga,Spec2 chr3R - chr3R_1434742_1435371 chr3R_1434741_1434742;chr3R_1435371_1435372 chr3R_1434172_1434741;chr3R_1435372_1435603 32.43 20.59 26.09 55.00 46.15 26.09 36.36 54.17 48.65 24.00 19.05 37.84 62.50 36.84 28.57 33.33 50.00 31.58 35.29 33.33 41.67 25.00 32.43 30.56 29.17 46.67 29.03 47.06 23.08 35.48 40.00 47.37 28.07 48.28 44.44 29.63 29.55 29.03 37.50 18.99 41.03 40.82 28.00 32.00 39.02 31.25 27.27 29.41 45.95 36.67 37.04 25.00 27.59 26.47 37.50 22.86 24.32 30.00 K intron_retention BHD chr3L + chr3L_7233086_7233143 chr3L_7233085_7233086;chr3L_7233143_7233144 chr3L_7232983_7233085;chr3L_7233144_7233353 7.69 6.67 0.00 4.65 NA 0.00 16.13 8.33 0.00 NA 0.00 11.76 NA 4.35 6.45 28.00 NA 14.29 0.00 6.90 NA 51.85 NA 16.67 7.14 3.45 35.00 NA 8.70 NA 20.83 0.00 0.00 5.41 0.00 0.00 NA NA 7.69 2.94 5.26 7.69 NA 10.53 10.81 14.29 15.79 15.15 6.90 25.00 28.57 NA NA NA 15.38 16.67 NA 8.00 K intron_retention CG32016,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_978516_978631 chr4_978515_978516;chr4_978631_978632 chr4_978478_978515;chr4_978632_978685 0.00 NA 0.00 0.00 NA 0.00 0.00 6.25 1.82 NA NA 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA 14.29 NA 0.00 0.00 NA NA NA 0.00 NA 2.33 NA 0.00 NA NA NA 0.00 NA NA NA K jcn_only_AD d4 chr2R + chr2R_1182569_1182620;chr2R_1182573_1182620;chr2R_1182566_1182620 chr2R_1182563_1182620 chr2R_1182621_1183461;chr2R_1182302_1182562 36.05 32.32 43.30 38.30 34.44 43.84 36.15 38.53 34.68 18.75 38.55 22.66 30.00 36.36 41.33 38.32 35.19 27.14 31.25 43.37 32.47 40.78 32.04 26.61 26.76 40.62 31.93 36.71 46.24 36.47 27.87 45.71 40.00 36.89 29.03 36.99 27.54 34.04 30.83 29.45 36.47 36.05 40.74 46.81 36.52 31.96 39.09 25.89 35.16 36.51 31.48 31.67 40.37 29.17 41.56 34.65 38.33 30.41 K intron_retention Psa,I_chr3L_1518053_1518213 chr3L + chr3L_1517957_1518389 chr3L_1517956_1517957;chr3L_1518389_1518390 chr3L_1517953_1517956;chr3L_1518390_1518796 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG11309,I_chr3L_21297192_21297708 chr3L - chr3L_21297192_21297542;chr3L_21297192_21297487 chr3L_21297192_21297389 chr3L_21297092_21297191;chr3L_21297543_21297554 80.00 NA 83.33 100.00 83.33 83.33 90.00 88.89 87.50 NA NA 70.00 66.67 80.00 80.00 84.62 60.00 80.00 75.00 100.00 75.00 60.00 75.00 66.67 NA 80.00 NA NA 75.00 100.00 77.78 80.00 83.33 88.89 NA 80.00 75.00 NA NA 80.00 66.67 88.89 60.00 NA NA 80.00 NA 100.00 83.33 60.00 NA NA NA NA 83.33 80.00 100.00 80.00 K jcn_only_AA CG7408 chr3L + chr3L_17872349_17872977;chr3L_17872349_17873049 chr3L_17872349_17873076 chr3L_17872262_17872348;chr3L_17873077_17873164 24.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 24.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG7371 chr2L - chr2L_5522680_5522734 chr2L_5522679_5522680;chr2L_5522734_5522735 chr2L_5522524_5522679;chr2L_5522735_5522950 0.00 0.00 0.00 3.70 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 0.00 6.67 0.00 3.23 NA 0.00 5.00 0.00 NA 0.00 10.53 NA NA NA 11.11 NA 5.88 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 5.26 7.69 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K alternative_donor RpS3A,I_chr4_87364_87465,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87533_87769;chr4_87533_87717;chr4_87533_87757 chr4_87533_87673 chr4_87466_87532;chr4_87770_87817 42.07 36.71 40.33 36.77 34.22 41.48 36.05 61.33 24.44 41.49 40.41 55.69 40.49 37.90 54.84 51.56 NA 36.43 35.21 41.61 39.02 48.76 61.76 49.91 45.52 43.19 49.06 58.23 47.66 35.20 31.89 36.26 19.62 32.54 47.39 NA NA 58.02 44.18 42.53 32.54 44.70 45.90 NA 24.73 33.46 47.89 49.91 32.86 38.83 62.71 NA 53.64 53.76 43.97 51.00 49.36 36.56 K alternative_donor CG4165,I_chrX_5317784_5317881,I_chrX_5321743_5321838 chrX + chrX_5316160_5316612;chrX_5316313_5316612;chrX_5315965_5316612 chrX_5316300_5316612 chrX_5316613_5317050;chrX_5315939_5315964 30.00 22.22 22.22 26.67 50.00 25.00 30.00 28.57 25.00 50.00 33.33 22.22 20.00 42.86 20.00 20.00 10.00 22.22 9.09 26.32 33.33 36.36 15.38 42.86 40.00 44.44 22.22 14.29 50.00 33.33 14.29 NA 50.00 33.33 33.33 30.00 36.36 25.00 40.00 27.27 0.00 17.65 0.00 50.00 50.00 50.00 16.67 50.00 18.75 0.00 38.46 40.00 22.22 NA 33.33 40.00 37.50 33.33 K jcn_only_AD shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9791078_9791208 chr2R - chr2R_9793007_9804358 chr2R_9793007_9795093 chr2R_9792727_9793006 0.00 0.00 3.08 0.00 2.17 3.12 1.64 0.00 0.00 0.00 0.00 1.30 2.56 2.44 0.00 0.92 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 2.13 1.12 0.00 0.00 8.11 0.00 0.00 NA 1.59 1.42 2.08 1.59 0.00 0.00 0.00 2.00 NA 2.04 2.13 0.00 NA NA NA 2.38 0.00 NA 1.64 NA NA NA 1.04 NA NA NA K cassette CG6206,I_chr2L_10459281_10459879,I_chr2L_10459518_10459620,I_chr2L_10459518_10459661 chr2L + chr2L_10459281_10459879;chr2L_10459518_10459879 chr2L_10459518_10459661,chr2L_10459281_10459661;chr2L_10459796_10459879 chr2L_10459662_10459795 chr2L_10459181_10459280;chr2L_10459880_10459979 3.23 NA 5.88 0.00 0.00 0.00 0.00 4.11 1.41 0.00 0.00 0.00 4.00 0.00 0.00 5.88 8.70 0.00 3.57 2.86 0.00 12.50 4.17 NA NA 0.00 4.35 NA NA 0.00 18.18 NA 0.00 4.88 NA NA 14.29 NA 0.00 4.76 NA 3.33 0.00 4.76 NA 8.33 0.00 4.76 3.39 NA 5.26 NA 0.00 NA 3.33 NA 4.55 3.12 K intron_retention sd,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15717958_15718074 chrX_15717957_15717958;chrX_15718074_15718075 chrX_15717785_15717957;chrX_15718075_15718309 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor osa,I_chr3R_13542657_13542834,I_chr3R_13542657_13543500,I_chr3R_13542657_13543662,I_chr3R_13542657_13543668,I_chr3R_13543730_13543786 chr3R - chr3R_13542657_13543968;chr3R_13542657_13543500;chr3R_13542657_13543662;chr3R_13542657_13542834;chr3R_13542657_13543677 chr3R_13542657_13543668 chr3R_13542557_13542656;chr3R_13543969_13544017 1.82 0.00 1.72 4.67 1.96 3.23 3.03 4.55 3.31 1.89 0.00 0.76 1.43 1.45 1.47 0.99 1.39 1.82 0.00 2.10 0.00 4.44 1.75 1.39 0.00 1.75 1.23 2.13 4.08 3.41 1.69 5.26 4.35 3.25 1.89 3.95 2.20 1.89 1.30 3.03 4.17 0.81 1.67 1.35 4.00 2.50 3.33 1.10 0.70 2.86 4.26 1.85 0.00 0.00 1.23 0.00 0.00 2.63 K jcn_only_AD bwa,I_chr2L_20073310_20073377 chr2L + chr2L_20066899_20069047 chr2L_20066903_20069047 chr2L_20069048_20069304;chr2L_20066389_20066898 1.42 1.06 0.00 2.11 0.00 3.53 0.00 0.88 0.67 3.81 1.96 3.68 0.00 2.53 1.30 1.08 1.54 3.28 0.00 3.01 0.00 0.95 2.68 2.17 1.56 2.60 0.00 3.30 1.10 0.79 6.78 1.02 2.70 0.85 1.05 1.12 1.35 1.25 2.36 0.45 1.42 2.78 0.00 1.79 0.59 2.72 1.12 0.00 1.50 4.00 0.00 1.69 1.82 4.00 2.86 0.00 2.90 3.14 K alternative_acceptor cl chr2L + chr2L_5520236_5520304;chr2L_5520236_5520286 chr2L_5520236_5520301 chr2L_5520216_5520235;chr2L_5520305_5520545 34.62 NA NA 25.64 NA 47.95 47.93 26.13 17.55 NA NA NA 27.27 NA 49.46 NA 27.03 27.12 42.55 NA NA 25.64 NA NA NA 27.38 NA NA NA NA 38.46 34.62 NA NA NA NA NA NA NA 45.83 NA 53.71 NA NA 54.05 29.55 NA 25.71 25.17 64.00 46.15 33.33 NA 50.00 47.25 NA 31.58 44.59 K intron_retention Ptpmeg,I_chr3L_353688_353782,I_chr3L_355125_355175 chr3L + chr3L_347659_351366 chr3L_347658_347659;chr3L_351366_351367 chr3L_347511_347658;chr3L_351367_351663 84.62 86.67 81.25 87.10 NA 78.57 78.12 76.92 86.67 83.33 75.00 90.91 73.33 80.95 85.71 95.65 92.31 82.35 77.78 84.62 90.91 81.25 80.77 72.00 71.43 88.00 80.65 77.78 85.71 92.86 90.48 88.89 86.21 80.00 77.78 85.71 86.67 90.91 73.91 76.74 85.71 87.50 64.71 91.30 81.82 66.67 85.71 83.33 89.74 66.67 71.88 86.67 92.86 NA 87.50 75.00 90.00 91.67 K jcn_only_AD CG1674,F_chr4_252231_252560,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_251522_252560;chr4_252227_252560 chr4_252254_252560 chr4_252561_252603;chr4_251483_251521 13.04 NA NA NA NA NA NA 13.04 0.00 NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention I_chr2R_11456012_11456623,Cdk5,CG8204 chr2R - chr2R_11458576_11458639 chr2R_11458575_11458576;chr2R_11458639_11458640 chr2R_11458388_11458575;chr2R_11458640_11458902 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 2.13 3.17 0.00 0.00 0.00 0.00 0.00 2.17 6.33 0.00 0.00 0.00 1.89 0.00 0.00 6.78 0.00 0.00 1.30 0.00 3.57 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 0.00 0.00 0.78 K intron_retention CG10445 chr3R - chr3R_3743517_3743577 chr3R_3743516_3743517;chr3R_3743577_3743578 chr3R_3742537_3743516;chr3R_3743578_3744999 0.00 NA NA 10.53 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 7.41 0.00 0.00 NA 0.00 16.67 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 K intron_retention CG10737 chr2R + chr2R_15061627_15062081 chr2R_15061626_15061627;chr2R_15062081_15062082 chr2R_15061209_15061626;chr2R_15062082_15062288 66.67 NA NA NA NA NA 18.33 66.67 100.00 NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA 15.38 NA NA NA NA NA NA NA NA NA NA NA NA 91.67 NA NA NA NA NA NA NA NA NA N cassette CG9510 chr2L - chr2L_8942453_8942826 chr2L_8942453_8942508;chr2L_8942656_8942826 chr2L_8942509_8942655 chr2L_8941989_8942452;chr2L_8942827_8943071 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.42 100.00 67.86 100.00 100.00 100.00 100.00 67.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 K intron_retention CG8292,RI_chr2L_8218680_8218853,I_chr2L_8230332_8238998 chr2L - chr2L_8217625_8217686 chr2L_8217624_8217625;chr2L_8217686_8217687 chr2L_8216851_8217624;chr2L_8217687_8218018 0.99 0.99 2.58 2.21 1.14 0.00 0.68 2.24 0.87 0.00 1.58 1.43 0.00 2.34 1.73 1.87 0.94 1.24 0.99 1.75 1.82 3.25 0.58 0.87 1.52 1.36 2.45 0.00 0.00 0.00 2.11 0.00 0.00 2.01 0.00 1.85 0.00 0.00 0.00 0.41 1.77 1.49 1.48 0.99 0.75 0.99 1.26 0.00 2.31 1.89 0.00 1.00 1.47 0.74 1.14 0.90 0.00 0.00 K jcn_only_AA Cirl,R_chr2R_4502755_4503407,E_chr2R_4505783_4507316 chr2R + chr2R_4505967_4506035 chr2R_4505967_4506023 chr2R_4505739_4505966;chr2R_4506036_4506234 75.70 73.91 80.65 77.39 80.00 83.33 65.71 74.12 70.32 71.88 74.47 74.11 73.91 80.00 78.26 81.25 68.09 77.78 69.57 78.95 75.00 86.70 80.20 68.37 69.33 81.82 82.05 77.78 79.17 75.70 85.71 72.73 81.68 80.46 73.33 81.61 70.47 70.93 73.28 81.14 71.15 68.85 78.05 73.68 76.56 78.57 65.57 89.01 83.96 71.74 75.81 77.46 77.08 71.43 71.43 68.75 70.83 70.37 K jcn_only_AA CG7987,RI_chr3R_10400799_10401492 chr3R - chr3R_10400608_10401492;chr3R_10400782_10401492 chr3R_10400799_10401492 chr3R_10401493_10401559;chr3R_10400270_10400607 5.72 8.51 2.33 8.93 14.81 2.63 0.00 10.00 13.41 NA 11.11 9.71 7.69 10.00 10.20 8.64 4.35 17.14 13.21 1.23 0.00 3.39 6.78 8.70 10.00 18.42 12.24 0.00 8.33 0.00 5.05 4.35 4.35 5.36 0.00 5.88 9.09 3.33 2.44 9.76 NA 4.69 11.76 3.23 0.00 3.12 3.03 5.56 8.25 NA 3.23 9.09 4.35 0.00 5.36 6.90 3.33 6.45 K alternative_last_exon olf186-F,CG30323 chr2R + chr2R_13738966_13742644;chr2R_13738966_13745146 chr2R_13738966_13746762 chr2R_13742645_13743293;chr2R_13745147_13745302 chr2R_13746763_13748712 chr2R_13738563_13738965 0.00 0.00 2.86 1.64 0.00 0.00 0.00 0.00 0.90 2.27 0.00 0.00 3.57 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 2.13 0.00 0.00 1.67 1.52 2.44 2.56 1.56 0.00 0.00 0.00 0.00 0.00 0.00 1.27 3.45 0.00 0.00 0.00 0.00 1.56 0.00 1.89 0.00 1.35 0.00 0.00 1.82 0.00 2.04 0.00 0.00 2.17 K intron_retention Mlf,noncoding_7111,CEI_chr2R_11826763_11827279 chr2R - chr2R_11825385_11825619 chr2R_11825384_11825385;chr2R_11825619_11825620 chr2R_11825316_11825384;chr2R_11825620_11825772 95.65 94.12 100.00 68.89 88.89 88.89 92.86 100.00 100.00 100.00 88.24 95.83 93.94 90.91 92.86 91.67 100.00 100.00 100.00 95.45 93.33 100.00 95.00 100.00 90.00 100.00 100.00 89.29 100.00 92.31 100.00 91.67 92.86 100.00 100.00 100.00 95.65 100.00 95.65 96.00 100.00 100.00 100.00 92.31 95.00 80.95 95.24 100.00 95.00 94.74 95.24 100.00 100.00 92.31 100.00 93.33 92.86 100.00 K alternative_donor I_chr2L_6323791_6325172,Gef26,I_chr2L_6330719_6330770 chr2L + chr2L_6323994_6325172 chr2L_6324119_6325172 chr2L_6325173_6325272;chr2L_6323851_6323993 100.00 100.00 100.00 96.30 92.86 93.33 96.97 100.00 97.83 100.00 100.00 95.24 100.00 100.00 94.44 96.43 100.00 100.00 100.00 97.44 100.00 100.00 100.00 96.00 94.74 94.12 95.65 100.00 100.00 100.00 95.45 NA 100.00 97.30 93.75 94.44 100.00 100.00 94.74 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 92.86 87.50 100.00 96.43 100.00 91.67 91.67 K intron_retention Reg-5,I_chr2R_20676374_20676658,RI_chr2R_20676692_20676888 chr2R - chr2R_20676692_20680313 chr2R_20676691_20676692;chr2R_20680313_20680314 chr2R_20676659_20676691;chr2R_20680314_20681209 0.00 0.00 0.00 1.04 0.00 0.00 3.08 0.00 0.00 0.00 0.00 1.80 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.38 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG31064,RI_chr3R_23056388_23064246,I_chr3R_23069667_23070365 chr3R - chr3R_23057831_23058194 chr3R_23057922_23058194 chr3R_23058195_23058597;chr3R_23056610_23057830 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 85.71 NA NA NA 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA 100.00 NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA NA 100.00 K cassette grp,I_chr2L_16697644_16698961,R_chr2L_16698072_16698138 chr2L + chr2L_16680277_16690901 chr2L_16680277_16684497;chr2L_16684608_16690901 chr2L_16684498_16684607 chr2L_16680076_16680276;chr2L_16690902_16691001 1.53 1.82 1.72 0.00 0.00 2.08 1.45 1.94 1.23 0.00 0.00 2.60 0.00 2.44 1.61 0.00 0.00 0.00 1.47 1.10 2.08 1.75 2.70 3.33 0.00 3.28 1.96 0.00 1.59 1.11 2.90 2.86 0.85 0.00 2.56 4.08 2.22 0.00 1.67 1.53 0.00 0.91 0.00 1.27 1.19 2.56 4.00 0.00 1.80 0.00 4.92 2.13 0.00 3.33 3.57 0.00 2.22 0.94 K intron_retention Dystrophin,I_chr3R_15314063_15319686 chr3R + chr3R_15313914_15313980 chr3R_15313913_15313914;chr3R_15313980_15313981 chr3R_15313818_15313913;chr3R_15313981_15314062 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 K cassette spen,I_chr2L_187184_187481,I_chr2L_200676_200752 chr2L + chr2L_163002_183760 chr2L_163002_175360;chr2L_175448_183760 chr2L_175361_175447 chr2L_162988_163001;chr2L_183761_185082 70.72 NA 55.56 58.33 80.00 77.78 77.78 72.22 55.56 NA 50.00 76.47 66.67 43.75 78.57 68.42 63.64 NA 46.15 75.00 NA 93.33 60.00 NA NA 72.73 85.71 NA NA 63.64 71.43 NA NA 61.90 NA 69.23 88.89 NA NA 70.00 NA 77.78 66.67 NA NA NA NA 54.55 71.43 NA 77.78 NA NA NA 88.89 NA NA NA K intron_retention l(3)05822,I_chr3R_14115739_14115801 chr3R - chr3R_14115430_14115487 chr3R_14115429_14115430;chr3R_14115487_14115488 chr3R_14114643_14115429;chr3R_14115488_14115738 0.00 0.00 0.00 1.77 0.00 0.00 1.41 0.78 0.85 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 5.30 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 2.02 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA RI_chr2R_3817895_3817951,rnh1,RI_chr2R_3819348_3819403 chr2R - chr2R_3819348_3819403 chr2R_3819352_3819403 chr2R_3819404_3819460;chr2R_3819248_3819347 98.73 98.86 100.00 98.26 98.33 100.00 98.72 98.15 99.26 98.84 100.00 100.00 100.00 98.36 100.00 100.00 96.15 98.73 98.04 96.64 100.00 98.97 96.77 97.27 100.00 98.88 98.94 94.81 98.33 97.92 96.43 99.17 98.62 98.06 97.75 95.16 96.08 98.89 99.12 98.92 98.54 97.74 98.51 98.89 98.36 98.96 99.04 98.73 100.00 99.01 96.51 100.00 98.21 98.78 97.70 98.17 98.46 99.37 K intron_retention Nup44A chr2R + chr2R_3877326_3877380 chr2R_3877325_3877326;chr2R_3877380_3877381 chr2R_3877055_3877325;chr2R_3877381_3877568 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 91.67 100.00 92.86 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 NA NA 100.00 100.00 90.91 100.00 K intron_retention Aldh-III,RE_chr2R_3355332_3355720,I_chr2R_3356541_3356614,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3355139_3355195 chr2R_3355138_3355139;chr2R_3355195_3355196 chr2R_3354988_3355138;chr2R_3355196_3355331 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 1.06 0.00 0.33 1.09 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Akt1 chr3R + chr3R_11924988_11926621;chr3R_11925318_11926621;chr3R_11925014_11926621;chr3R_11925383_11926621 chr3R_11926502_11926621 chr3R_11926622_11926719;chr3R_11924974_11924987 10.61 10.53 8.62 5.56 9.52 28.95 4.35 4.95 10.61 18.75 22.50 12.75 6.06 11.32 19.64 5.75 7.55 8.33 10.94 12.60 34.29 40.00 6.67 11.29 10.64 21.95 10.81 17.39 26.67 21.43 10.00 13.33 17.57 6.86 11.76 10.61 7.23 6.82 11.11 11.34 8.89 8.11 15.00 11.67 25.00 8.00 7.55 18.18 6.14 6.00 10.00 6.12 6.45 9.09 14.06 8.70 14.29 7.69 K intron_retention hermaphrodite chr2L + chr2L_16678250_16678317 chr2L_16678249_16678250;chr2L_16678317_16678318 chr2L_16677194_16678249;chr2L_16678318_16678581 0.00 0.00 0.00 8.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 5.00 0.00 NA 2.44 4.35 2.13 3.57 0.00 0.00 2.22 0.00 0.00 0.00 6.45 0.00 4.65 0.00 0.00 0.00 NA 0.00 0.00 1.67 3.03 0.00 5.26 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG30344,RI_chr2R_5033951_5034150,I_chr2R_5036518_5036570 chr2R + chr2R_5034552_5034619 chr2R_5034551_5034552;chr2R_5034619_5034620 chr2R_5034368_5034551;chr2R_5034620_5034806 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 1.92 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG12079,CG14964 chr3L - chr3L_3159349_3159408 chr3L_3159349_3159404 chr3L_3159274_3159348;chr3L_3159409_3159555 0.00 0.57 0.60 0.84 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.29 0.00 0.31 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 2.03 1.03 0.00 0.00 0.00 0.64 0.00 1.14 0.59 0.30 1.01 0.39 0.00 2.92 0.00 0.90 0.80 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.67 0.88 0.32 0.00 K cassette CG34123,I_chr2R_11159045_11159622,RI_chr2R_11160894_11162043,I_chr2R_11167854_11168411 chr2R - chr2R_11159045_11162043 chr2R_11159045_11160056;chr2R_11160114_11162043 chr2R_11160057_11160113 chr2R_11158945_11159044;chr2R_11162044_11162143 25.00 23.08 25.00 22.58 50.00 25.00 14.29 25.00 20.83 13.33 18.18 24.24 NA 15.00 23.81 19.05 18.18 25.00 35.71 24.39 36.36 14.81 32.00 37.50 26.67 12.50 29.41 NA 25.00 23.53 35.29 NA 22.73 24.00 35.71 14.29 21.43 25.00 33.33 30.00 33.33 26.09 NA 33.33 NA NA 36.36 14.81 33.33 26.67 27.27 27.78 NA NA 30.77 25.00 33.33 27.78 K jcn_only_AA CG8177,E_chr3L_9756800_9772650,RI_chr3L_9757294_9758708,I_chr3L_9773534_9773635,I_chr3L_9774319_9774602 chr3L + chr3L_9757294_9764754 chr3L_9757294_9758708 chr3L_9757194_9757293;chr3L_9764755_9765019 3.70 2.44 3.70 1.52 NA 8.33 1.67 0.00 1.09 0.00 0.00 25.76 3.85 0.00 9.68 3.64 NA 8.11 0.00 27.14 7.69 2.86 3.23 5.56 12.50 2.50 0.00 NA 3.45 6.25 2.78 4.17 8.11 6.35 2.56 0.00 0.00 3.12 6.67 4.69 NA 7.81 8.57 0.00 NA 4.55 9.52 4.44 9.62 NA 9.43 7.14 NA NA 2.50 NA NA 2.94 K intron_retention ND75 chrX - chrX_8143128_8143186 chrX_8143127_8143128;chrX_8143186_8143187 chrX_8142676_8143127;chrX_8143187_8143675 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 K intron_retention CG6310 chr3L - chr3L_11062407_11062467 chr3L_11062406_11062407;chr3L_11062467_11062468 chr3L_11062129_11062406;chr3L_11062468_11062676 0.00 0.00 0.00 0.81 0.00 0.39 0.55 0.00 0.26 0.00 0.00 0.00 0.00 0.35 0.00 0.44 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.56 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.77 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.29 0.00 0.29 0.00 0.26 0.00 K alternative_acceptor CG7158 chr3L - chr3L_21668049_21668121;chr3L_21668063_21668121 chr3L_21668076_21668121 chr3L_21668122_21668273;chr3L_21667494_21668048 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 15.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG2818 chr2L + chr2L_3714492_3714646;chr2L_3714574_3714646 chr2L_3714584_3714646 chr2L_3714647_3716104;chr2L_3714467_3714491 16.67 23.08 15.38 25.00 NA 20.00 26.67 33.33 20.69 50.00 27.27 15.79 25.00 15.38 26.67 11.76 11.11 36.36 33.33 20.83 12.50 8.33 14.81 11.76 5.88 11.11 15.00 15.38 16.67 26.67 48.57 NA 8.70 17.65 16.67 0.00 15.00 10.00 20.00 25.00 25.00 14.71 7.69 17.65 18.18 25.00 16.67 5.88 20.83 18.18 14.81 12.50 NA 11.11 42.86 25.00 14.29 16.67 K intron_retention RpI1,REFI_chr2R_10491644_10491701 chr2R - chr2R_10484049_10484108 chr2R_10484048_10484049;chr2R_10484108_10484109 chr2R_10483949_10484048;chr2R_10484109_10484226 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG2371 chrX - chrX_11572304_11572435 chrX_11572383_11572435 chrX_11572436_11572509;chrX_11571619_11572303 95.65 93.33 90.00 92.31 91.67 90.91 100.00 92.86 96.97 100.00 87.50 100.00 100.00 100.00 90.91 88.89 88.89 100.00 92.31 95.45 100.00 100.00 88.00 95.00 100.00 90.00 93.33 92.31 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 95.83 94.44 95.83 95.00 100.00 93.33 100.00 90.00 100.00 88.24 94.44 100.00 94.12 100.00 94.44 100.00 94.74 100.00 91.67 95.65 96.55 100.00 K alternative_acceptor Pink1,F_chrX_6578108_6578160,F_chrX_6578108_6578165,F_chrX_6578108_6578251,I_chrX_6578115_6578251 chrX + chrX_6578104_6578160;chrX_6578104_6578251 chrX_6578104_6578165 chrX_6578015_6578103;chrX_6578252_6578260 16.67 0.00 NA 20.00 NA 0.00 12.50 21.43 0.00 NA 40.00 0.00 0.00 33.33 0.00 20.00 NA 0.00 NA 30.00 40.00 28.57 0.00 0.00 0.00 NA 20.00 NA 33.33 NA NA NA 16.67 0.00 20.00 0.00 NA NA 0.00 8.33 0.00 20.00 50.00 NA 20.00 0.00 NA 16.67 23.08 NA 16.67 NA NA NA 16.67 20.00 NA 0.00 K cassette Nipped-B,I_chr2R_580301_580515,I_chr2R_580453_580515,I_chr2R_580989_582555,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_580301_580515 chr2R_580301_580358;chr2R_580453_580515 chr2R_580359_580452 chr2R_580236_580300;chr2R_580516_580582 90.00 100.00 88.89 91.67 NA 85.71 84.38 88.89 94.44 100.00 71.43 94.44 90.00 100.00 90.91 93.75 100.00 NA 77.78 72.22 NA 88.89 NA NA NA NA 88.89 NA 100.00 100.00 94.12 90.48 77.78 91.30 85.71 90.00 NA NA NA 100.00 78.57 95.24 90.91 100.00 70.00 90.00 NA 88.00 83.33 85.71 81.82 NA NA NA 100.00 83.33 75.00 94.44 K intron_retention CG4662,I_chr3R_15676853_15676928 chr3R + chr3R_15676675_15676786 chr3R_15676674_15676675;chr3R_15676786_15676787 chr3R_15676662_15676674;chr3R_15676787_15676852 0.00 0.00 10.53 0.00 0.00 12.50 8.57 3.57 2.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 7.69 NA 0.00 4.44 0.00 NA 0.00 NA 0.00 0.00 0.00 4.44 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20334199_20334620 chr2L_20334198_20334199;chr2L_20334620_20334621 chr2L_20334099_20334198;chr2L_20334621_20334730 0.00 1.32 0.00 3.70 0.00 0.00 1.54 0.00 0.61 0.00 0.00 1.44 0.00 0.00 0.00 0.00 0.00 0.00 1.35 1.03 0.00 0.58 0.79 0.00 0.00 0.00 0.00 1.17 0.66 0.00 0.00 1.94 0.31 1.46 0.00 0.00 0.00 3.37 0.78 0.00 1.14 1.38 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG12582 chr3R + chr3R_24649_24726 chr3R_24648_24649;chr3R_24726_24727 chr3R_24552_24648;chr3R_24727_25015 0.00 0.00 0.53 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 2.19 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Sbf chr3R - chr3R_7622217_7622565 chr3R_7622216_7622217;chr3R_7622565_7622566 chr3R_7622103_7622216;chr3R_7622566_7622650 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA NA 20.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA N alternative_acceptor HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13164646_13165514;chrX_13164727_13165514 chrX_13164676_13165514 chrX_13165515_13165622;chrX_13164424_13164645 86.05 83.56 87.21 70.18 79.71 80.00 67.72 81.82 86.05 89.80 81.33 86.81 85.29 86.76 81.61 84.44 88.06 82.43 85.71 71.60 83.33 87.14 82.93 90.72 85.71 87.32 83.33 89.80 78.48 86.67 86.21 89.80 88.52 87.90 86.76 75.00 85.37 90.22 81.98 89.40 86.27 90.30 80.88 91.49 89.80 83.78 85.19 88.70 84.15 88.41 85.59 87.14 95.45 92.11 87.13 88.89 80.85 85.29 K intron_retention CG2316,REI_chr4_205422_208622,I_chr4_206537_206603,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_213991,RI_chr4_210688_214450 chr4 - chr4_205422_206452 chr4_205421_205422;chr4_206452_206453 chr4_205322_205421;chr4_206453_206536 3.70 7.25 3.30 10.24 3.92 1.25 8.55 3.20 5.05 0.00 2.27 5.44 4.23 6.06 3.70 6.48 1.09 1.33 5.04 5.44 0.00 1.79 4.76 7.69 7.14 8.62 5.62 0.00 0.00 2.00 5.93 0.00 0.00 3.21 3.77 20.00 5.00 0.00 0.00 3.28 3.77 5.03 0.00 5.88 0.00 4.00 0.00 0.00 4.57 5.63 4.29 3.39 0.00 2.50 4.88 1.41 2.35 2.35 K intron_retention Tm1,I_chr3R_11120969_11125831,I_chr3R_11121267_11122312,I_chr3R_11121267_11124998,RI_chr3R_11125070_11125831,I_chr3R_11125070_11126469 chr3R + chr3R_11121267_11122312 chr3R_11121266_11121267;chr3R_11122312_11122313 chr3R_11121167_11121266;chr3R_11122313_11122327 100.00 NA NA 100.00 NA NA 100.00 100.00 92.86 NA 66.67 NA NA NA NA 90.00 NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention eIF5,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15882023_15882100 chrX_15882022_15882023;chrX_15882100_15882101 chrX_15881079_15882022;chrX_15882101_15882577 1.67 0.79 1.66 10.05 0.81 2.11 1.46 1.84 2.23 2.90 1.52 2.92 0.00 2.67 1.25 1.55 1.33 0.73 3.59 1.98 2.79 0.76 2.25 1.23 0.00 2.53 1.88 2.17 4.80 0.81 1.48 1.28 1.49 2.47 0.00 0.00 1.61 1.83 1.67 1.88 1.80 2.35 0.00 1.63 0.67 1.72 1.88 1.20 2.04 2.27 3.55 1.03 1.32 2.82 1.92 3.14 1.36 0.00 K intron_retention CG32795,I_chrX_2677459_2682526,I_chrX_2677729_2677799,I_chrX_2679163_2681784 chrX - chrX_2678521_2678580 chrX_2678520_2678521;chrX_2678580_2678581 chrX_2678303_2678520;chrX_2678581_2678720 0.00 NA NA NA NA NA NA 0.00 4.55 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA 5.26 NA NA NA K cassette RI_chr2R_3817895_3817951,rnh1,RI_chr2R_3819348_3819403 chr2R - chr2R_3819352_3819512 chr2R_3819352_3819403;chr2R_3819461_3819512 chr2R_3819404_3819460 chr2R_3819116_3819351;chr2R_3819513_3819836 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 98.36 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.28 100.00 100.00 K jcn_only_AA CG17683,I_chr2R_18774_18869 chr2R + chr2R_18630_18692 chr2R_18630_18680 chr2R_18552_18629;chr2R_18693_18747 96.30 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA 96.00 NA NA NA NA NA NA 95.45 NA NA NA NA NA NA NA 92.31 NA NA 95.24 NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA 96.30 NA NA NA NA NA NA NA NA NA K cassette CG18659,E_chr2R_5011363_5019110,RI_chr2R_5013572_5014531,I_chr2R_5016147_5016997 chr2R - chr2R_5011651_5014923;chr2R_5013719_5014923;chr2R_5013572_5014923 chr2R_5011651_5014531,chr2R_5013719_5014531,chr2R_5013572_5014531;chr2R_5014668_5014923 chr2R_5014532_5014667 chr2R_5011194_5011650;chr2R_5014924_5015382 6.67 11.11 4.35 13.51 3.85 4.17 10.87 8.57 5.63 15.38 0.00 25.00 21.74 16.67 7.41 15.00 3.85 6.25 6.90 13.51 7.69 5.88 2.27 5.41 8.00 7.41 6.25 4.00 4.35 4.35 17.39 NA 9.68 10.64 13.64 5.88 6.12 3.57 4.88 9.52 10.53 6.25 10.53 13.79 5.26 18.75 5.56 19.05 10.00 2.70 5.45 0.00 0.00 6.67 6.67 3.85 6.67 23.08 K intron_retention ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13414486_13414718 chr2R_13414485_13414486;chr2R_13414718_13414719 chr2R_13414389_13414485;chr2R_13414719_13414817 0.00 0.00 2.50 0.00 2.78 0.00 1.61 0.00 1.03 0.00 0.00 0.63 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.77 0.00 0.72 0.00 0.00 0.00 0.00 1.52 0.00 1.04 0.00 0.00 0.00 0.81 0.00 2.44 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 1.74 0.00 0.00 0.00 0.48 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 K intron_retention Syx13,RI_chr3L_13037959_13038017,CG11279 chr3L + chr3L_13037959_13038017 chr3L_13037958_13037959;chr3L_13038017_13038018 chr3L_13037859_13037958;chr3L_13038018_13038117 78.17 NA 76.92 80.95 NA NA 58.82 75.00 86.96 NA 80.00 63.16 NA 60.00 76.92 66.67 NA NA 78.57 78.95 NA 60.00 92.86 54.55 83.33 50.00 87.50 90.00 77.78 NA 75.00 69.23 54.55 76.92 66.67 93.75 78.57 NA 82.35 72.73 90.91 65.38 NA NA 90.91 88.89 NA 81.82 73.91 NA 88.24 90.00 63.64 NA 90.00 80.00 81.82 71.43 K intron_retention Pcd,RI_chr3R_25549489_25549568 chr3R + chr3R_25549311_25549568 chr3R_25549310_25549311;chr3R_25549568_25549569 chr3R_25549160_25549310;chr3R_25549569_25549668 0.38 0.97 1.60 0.00 0.00 1.35 0.52 0.91 1.44 0.00 0.00 0.74 0.00 0.00 0.00 2.01 0.00 0.72 1.26 0.33 0.00 0.79 0.00 0.00 1.04 0.00 3.05 0.00 0.00 0.71 0.76 0.62 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.38 0.00 1.38 0.00 1.32 0.39 0.27 0.88 0.00 1.31 1.47 1.94 0.00 1.10 0.00 0.49 1.70 0.35 0.42 K jcn_only_AD eIF-2beta,RI_chr3L_12519486_12519541 chr3L - chr3L_12519486_12519596;chr3L_12519486_12519541;chr3L_12519486_12519590 chr3L_12519486_12519688 chr3L_12519386_12519485;chr3L_12519689_12519829 99.46 99.35 99.68 100.00 100.00 97.77 98.92 100.00 99.38 99.03 99.48 99.16 98.92 100.00 99.65 99.31 99.44 99.63 99.63 99.64 99.62 99.66 99.55 99.47 96.38 98.90 98.96 99.54 98.10 99.65 95.92 99.53 99.46 99.45 99.18 100.00 97.98 100.00 97.75 100.00 100.00 100.00 99.52 99.32 98.03 98.68 99.43 99.53 98.81 99.32 99.18 100.00 99.72 99.14 100.00 99.17 100.00 99.31 K alternative_donor CG13923,CG12022 chr3L + chr3L_1803568_1803794 chr3L_1803734_1803794 chr3L_1803795_1804355;chr3L_1803433_1803567 5.88 3.85 0.00 5.88 0.00 6.67 10.00 0.00 12.90 27.27 NA 5.71 0.00 7.14 4.35 0.00 0.00 NA 16.67 10.81 7.69 30.00 0.00 8.33 0.00 5.88 NA NA 9.09 0.00 25.00 NA 0.00 4.17 5.56 6.25 3.12 0.00 0.00 7.69 0.00 8.33 NA 7.14 9.52 6.67 7.69 7.14 8.33 6.67 2.94 6.25 0.00 3.85 0.00 3.57 0.00 5.88 K cassette RhoGAPp190,I_chrX_17544272_17544863,I_chrX_17546225_17546531 chrX - chrX_17537281_17540552 chrX_17537281_17537713;chrX_17538212_17540552 chrX_17537714_17538211 chrX_17537059_17537280;chrX_17540553_17540618 74.07 75.61 65.31 44.07 67.57 74.29 61.70 62.07 69.15 70.73 51.43 60.24 42.11 56.52 62.00 73.91 59.46 77.78 38.24 73.12 52.38 70.45 78.33 73.91 80.77 55.81 58.33 87.50 74.42 75.51 64.81 74.07 83.02 73.02 82.05 79.41 79.63 88.57 79.25 78.67 80.00 67.06 75.76 77.50 76.92 76.19 80.85 76.71 63.41 81.58 82.93 71.43 85.71 83.33 73.08 80.00 80.00 68.42 K alternative_donor RI_chr3R_205772_205830,Cont,I_chr3R_207254_207600 chr3R + chr3R_207252_207600 chr3R_207254_207600 chr3R_207601_207700;chr3R_207189_207251 3.45 4.55 NA 7.89 NA NA 5.26 14.29 1.75 0.00 NA 3.45 NA 8.70 0.00 3.23 3.45 0.00 9.09 9.30 0.00 7.69 8.89 6.67 0.00 4.76 8.82 6.67 3.03 3.70 3.45 NA 4.26 0.00 6.67 8.33 0.00 4.35 0.00 4.35 0.00 1.67 0.00 1.43 0.00 2.94 NA 0.00 0.00 0.00 4.55 0.00 NA NA 9.52 NA 0.00 0.00 K jcn_only_AD CG40263,F_chr2RHet_1265687_1293040,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1265687_1286305;chr2RHet_1265687_1286307 chr2RHet_1265687_1291241 chr2RHet_1265587_1265686 0.00 NA NA NA NA NA NA 0.00 3.70 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA RpL22,noncoding_21234,snoRNA:Psi18S-531,snoRNA:Psi28S-2179 chrX - chrX_657025_658334;chrX_657019_658334 chrX_657022_658334 chrX_658335_658556;chrX_656593_657018 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.03 0.04 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.02 0.00 0.02 0.07 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 K intron_retention Pli,I_chr3R_19691378_19715415 chr3R - chr3R_19714914_19715415 chr3R_19714913_19714914;chr3R_19715415_19715416 chr3R_19714779_19714913;chr3R_19715416_19715515 8.01 NA 0.00 0.00 NA NA 3.70 0.00 25.81 NA NA 10.71 NA NA 0.00 17.39 NA 14.29 NA 8.33 NA 18.75 NA NA NA NA 23.08 NA NA NA 7.14 NA NA 3.23 NA NA NA NA NA NA 7.69 8.33 NA 9.52 NA 17.65 NA 16.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention I_chr2L_822032_822857,dock chr2L + chr2L_830350_830737 chr2L_830349_830350;chr2L_830737_830738 chr2L_830145_830349;chr2L_830738_830750 0.00 0.00 0.00 3.08 0.00 0.00 0.00 3.03 0.00 0.00 0.00 3.61 0.00 0.00 0.00 3.85 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 K intron_retention CG7601,I_chr3R_25561375_25561435 chr3R - chr3R_25561955_25562011 chr3R_25561954_25561955;chr3R_25562011_25562012 chr3R_25561738_25561954;chr3R_25562012_25562155 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 1.37 3.12 1.56 1.15 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.58 0.61 0.00 0.00 1.41 1.67 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.40 0.83 0.00 2.47 0.00 0.00 0.00 0.00 0.00 1.26 K intron_retention CG33097,I_chr3R_2191538_2191675,I_chr3R_2199103_2199426 chr3R - chr3R_2190877_2191675 chr3R_2190876_2190877;chr3R_2191675_2191676 chr3R_2190726_2190876;chr3R_2191676_2191775 1.15 0.00 0.00 0.00 0.00 0.00 4.08 1.67 2.04 7.41 0.00 1.19 0.00 0.00 0.00 0.00 0.00 5.13 2.70 3.26 12.12 2.17 6.33 3.08 0.00 0.00 1.28 0.00 0.00 1.92 0.00 0.00 1.41 1.79 0.00 2.13 5.00 0.00 1.20 2.78 1.54 3.95 3.23 0.00 0.00 0.00 0.00 2.13 1.15 0.00 1.16 0.00 0.00 1.59 2.04 0.00 0.00 1.54 K intron_retention Snap,I_chr3L_20306985_20307177 chr3L + chr3L_20308024_20308082 chr3L_20308023_20308024;chr3L_20308082_20308083 chr3L_20307708_20308023;chr3L_20308083_20308403 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.93 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.58 0.00 1.20 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.69 2.15 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 K intron_retention eIF-4a,I_chr2L_5985221_5985289 chr2L + chr2L_5984943_5985025 chr2L_5984942_5984943;chr2L_5985025_5985026 chr2L_5984750_5984942;chr2L_5985026_5985220 0.05 0.00 0.07 0.06 0.00 0.00 0.04 0.02 0.02 0.00 0.06 0.05 0.03 0.00 0.07 0.05 0.06 0.00 0.08 0.04 0.06 0.00 0.02 0.00 0.07 0.00 0.16 0.59 0.06 0.07 0.03 0.00 0.08 0.02 0.08 0.04 0.08 0.05 0.08 0.04 0.10 0.06 0.03 0.02 0.06 0.06 0.04 0.06 0.11 0.05 0.09 0.00 0.00 0.05 0.04 0.00 0.06 0.04 K intron_retention Ser,I_chr3R_23013597_23017227 chr3R - chr3R_23017847_23019665 chr3R_23017846_23017847;chr3R_23019665_23019666 chr3R_23017228_23017846;chr3R_23019666_23019964 14.29 12.50 NA 26.67 NA 11.76 16.67 16.22 15.69 NA 38.89 16.22 15.00 18.75 10.00 15.38 20.00 63.64 11.11 13.04 14.29 NA 14.81 NA NA NA 14.29 NA NA 17.39 7.14 NA 17.39 12.12 NA 13.33 9.38 20.00 4.76 13.04 NA 12.50 NA 13.04 NA 20.00 NA 0.00 12.50 NA 17.65 7.69 NA NA 3.85 NA NA NA K intron_retention Pabp2,I_chr2R_4020297_4020426 chr2R + chr2R_4019638_4019894 chr2R_4019637_4019638;chr2R_4019894_4019895 chr2R_4019443_4019637;chr2R_4019895_4020296 6.15 4.88 6.02 3.70 5.88 6.98 5.88 6.15 5.12 5.63 5.26 7.05 9.86 7.14 6.25 6.45 2.74 7.78 7.25 7.66 3.70 8.96 12.12 6.03 7.14 6.58 5.71 4.94 4.88 5.26 5.49 8.43 0.00 4.46 13.56 9.68 8.06 1.94 5.65 7.65 4.44 6.21 11.86 5.75 4.35 11.76 5.05 8.87 5.62 7.58 8.55 7.23 7.69 14.61 5.05 8.08 3.12 5.48 K alternative_donor D1,RI_chr3R_5065631_5065691,I_chr3R_5065631_5065695,I_chr3R_5065631_5065697 chr3R - chr3R_5065631_5065767;chr3R_5065631_5065697;chr3R_5065631_5065695 chr3R_5065631_5065691 chr3R_5065531_5065630;chr3R_5065768_5065790 59.77 48.78 71.15 73.53 62.50 52.73 56.90 59.74 64.56 47.83 58.62 66.67 68.89 61.22 70.37 52.21 70.37 69.05 62.50 69.11 67.50 68.97 43.18 68.42 57.69 73.68 62.07 50.00 60.42 50.00 62.50 53.23 59.77 57.32 62.79 56.76 51.85 39.13 66.67 56.48 70.97 56.32 52.38 54.55 62.96 74.77 57.78 65.52 72.57 40.00 47.62 57.69 41.86 40.48 67.61 58.70 64.86 55.24 K intron_retention RpL13,E_chr2L_9967706_9968364,E_chr2L_9967879_9967991 chr2L + chr2L_9967878_9967938 chr2L_9967877_9967878;chr2L_9967938_9967939 chr2L_9967779_9967877;chr2L_9967939_9968247 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Akap200,I_chr2L_8426446_8426873 chr2L + chr2L_8428068_8430728 chr2L_8428067_8428068;chr2L_8430728_8430729 chr2L_8427615_8428067;chr2L_8430729_8430970 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD RpL32,I_chr3R_25871509_25871807 chr3R - chr3R_25871509_25871851;chr3R_25871509_25871771;chr3R_25871509_25871611;chr3R_25871509_25871583 chr3R_25871509_25871855 chr3R_25871409_25871508;chr3R_25871856_25871862 94.82 96.11 96.67 96.70 96.87 97.27 96.28 97.29 96.72 90.06 96.38 97.02 97.56 98.01 97.56 96.32 97.45 96.07 97.48 97.18 96.40 89.09 88.63 91.48 92.54 96.83 90.33 91.99 84.62 85.88 96.07 93.54 89.66 96.58 90.02 89.23 94.59 92.27 92.90 94.52 89.80 97.24 96.49 91.96 93.62 88.96 94.82 89.55 97.51 93.05 87.27 92.42 96.59 89.32 97.18 90.62 96.12 92.34 K jcn_only_AD oaf chr2L + chr2L_2495889_2496398 chr2L_2495927_2496398 chr2L_2496399_2497357;chr2L_2495570_2495888 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 17.86 0.00 NA NA 0.00 0.00 NA 0.00 0.00 2.50 0.00 0.00 NA 0.00 NA 0.00 3.23 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA NA 0.00 K jcn_only_AA I_chr2L_4834257_4835246,CG15626,I_chr2L_4837691_4837844,I_chr2L_4837780_4837844 chr2L - chr2L_4837691_4837844;chr2L_4837780_4837844 chr2L_4837640_4837844 chr2L_4837845_4837944;chr2L_4837602_4837639 94.87 97.56 97.30 94.12 87.50 93.55 89.19 89.80 95.79 92.00 100.00 98.25 91.84 94.44 93.75 97.78 100.00 94.12 97.37 97.09 100.00 87.76 96.72 89.47 NA 100.00 97.30 87.50 100.00 100.00 94.74 96.67 89.29 94.12 100.00 NA 92.98 89.13 91.94 87.18 NA 96.05 92.86 95.56 92.86 96.43 95.00 90.00 97.30 97.06 96.43 92.00 97.67 87.50 97.37 94.44 92.59 100.00 K intron_retention CG17119,noncoding_18500,sav chr3R - chr3R_18882049_18883154 chr3R_18882048_18882049;chr3R_18883154_18883155 chr3R_18881921_18882048;chr3R_18883155_18883278 12.82 15.71 10.87 15.94 9.09 12.50 21.95 11.39 13.41 13.46 25.00 9.32 21.43 8.16 18.92 11.34 12.50 11.36 12.50 9.36 19.23 18.18 10.94 14.46 19.51 9.30 26.67 35.71 10.87 13.79 14.71 13.21 14.61 10.00 11.27 27.27 14.08 14.55 13.24 6.56 18.09 9.28 12.82 9.87 9.30 8.80 12.24 4.84 8.73 16.92 14.55 15.52 11.69 15.15 7.14 13.89 12.63 5.20 K intron_retention CG14442,I_chrX_6586147_6586435 chrX - chrX_6586898_6587125 chrX_6586897_6586898;chrX_6587125_6587126 chrX_6586436_6586897;chrX_6587126_6589034 90.41 94.12 84.62 92.31 82.35 84.62 96.67 72.73 91.84 96.97 75.00 92.50 78.57 83.33 95.83 85.19 93.75 76.47 88.46 93.85 88.24 91.49 94.87 91.30 95.83 88.00 92.86 87.50 79.63 80.00 85.71 88.57 85.07 88.24 84.62 100.00 95.24 90.91 92.00 85.00 86.67 88.89 93.33 95.12 87.80 88.24 94.74 79.10 90.20 95.65 96.30 84.62 93.10 100.00 93.10 97.06 100.00 90.41 K jcn_only_AD nimB5,Cyp28a5 chr2L + chr2L_13970867_13971138 chr2L_13970871_13971138 chr2L_13971139_13971681;chr2L_13970488_13970866 1.84 0.51 2.15 0.85 1.69 0.00 3.70 1.62 1.85 1.82 2.08 2.63 0.49 1.32 2.04 4.13 3.28 1.47 1.46 1.84 3.53 1.43 1.54 2.34 4.00 1.65 1.72 0.00 5.00 2.94 8.51 2.70 2.44 0.51 1.32 0.00 1.06 0.00 1.88 5.00 0.00 2.42 2.36 4.05 5.26 0.92 1.87 0.00 1.52 0.91 2.12 0.00 2.04 1.37 2.15 1.86 3.68 0.98 K intron_retention Axs,RI_chrX_16575870_16575942 chrX - chrX_16577167_16577241 chrX_16577166_16577167;chrX_16577241_16577242 chrX_16577060_16577166;chrX_16577242_16577390 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.36 3.74 0.00 0.00 0.00 0.00 0.00 6.06 5.88 6.25 0.00 0.00 0.00 5.88 1.64 0.00 0.00 0.00 8.57 3.28 0.00 12.90 3.70 0.00 0.00 3.12 1.96 0.00 0.00 0.00 0.00 1.15 0.00 14.29 3.08 0.00 0.00 2.94 7.32 0.00 5.71 6.56 0.00 0.00 1.92 0.00 0.00 0.00 2.63 4.17 0.00 K alternative_donor Rox8,I_chr3R_19872211_19872659,I_chr3R_19872214_19872630,I_chr3R_19872214_19872636,I_chr3R_19872214_19872838,I_chr3R_19876189_19876240 chr3R - chr3R_19872214_19873834;chr3R_19872214_19873540;chr3R_19872214_19873682 chr3R_19872214_19873550 chr3R_19872114_19872213;chr3R_19873835_19873903 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RI_chrX_7172561_7252693,CG1677,I_chrX_7178792_7252693,unc-119 chrX - chrX_7184711_7184825 chrX_7184711_7184821 chrX_7184704_7184710;chrX_7184826_7185302 95.45 94.12 94.44 92.86 100.00 83.33 100.00 95.65 96.88 100.00 92.31 96.55 94.74 92.86 100.00 86.96 100.00 93.33 100.00 96.88 100.00 95.24 100.00 100.00 92.86 94.12 100.00 92.31 92.86 88.46 100.00 92.31 95.12 94.74 100.00 95.45 94.74 100.00 94.44 96.67 96.00 93.10 100.00 92.86 100.00 95.24 94.74 100.00 90.62 93.75 100.00 100.00 92.86 90.91 100.00 100.00 100.00 95.45 K alternative_acceptor E(bx),I_chr3L_240127_240176,I_chr3L_246324_246699 chr3L - chr3L_240111_240176;chr3L_240117_240176;chr3L_240127_240176 chr3L_240114_240176 chr3L_240177_240276;chr3L_240027_240110 17.02 17.86 17.02 11.82 18.52 17.02 19.10 13.93 20.00 20.41 5.77 15.60 16.42 14.29 15.05 17.82 20.97 15.79 20.88 16.22 12.86 15.79 13.64 20.00 20.00 15.58 13.41 11.11 23.81 15.31 12.50 18.97 13.27 18.46 10.67 22.47 21.74 18.18 23.68 20.42 15.71 17.61 18.52 26.09 17.81 12.66 14.00 18.37 11.25 8.70 18.18 14.29 14.89 23.26 17.14 16.07 21.57 17.39 K alternative_acceptor CG14408 chrX - chrX_14724534_14725124 chrX_14724541_14725124 chrX_14725125_14725543;chrX_14724466_14724533 84.62 87.50 NA NA NA NA NA NA 86.67 100.00 NA 75.00 NA 87.50 81.82 NA 88.89 85.71 NA 87.50 NA 76.47 77.78 78.57 NA 70.00 84.62 100.00 90.00 66.67 76.47 NA 92.31 92.31 NA NA 92.86 85.71 75.00 76.47 85.71 73.33 NA 87.50 87.50 83.33 NA 70.59 84.62 87.50 64.71 90.91 NA NA 63.64 NA 77.78 77.78 K intron_retention Tsp42Ef,I_chr2R_2912947_2914327 chr2R + chr2R_2915147_2915206 chr2R_2915146_2915147;chr2R_2915206_2915207 chr2R_2914949_2915146;chr2R_2915207_2915588 0.00 0.00 4.23 3.19 0.00 0.00 2.90 0.00 2.59 NA 0.00 0.00 0.00 0.00 1.41 0.00 3.03 0.00 2.67 0.00 0.00 0.00 1.10 2.70 0.00 0.00 1.12 5.41 7.41 0.00 0.00 2.70 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 3.06 0.00 0.00 2.70 0.00 0.90 2.70 0.00 0.00 0.00 K cassette CG42271,I_chrX_14127244_14127453,RI_chrX_14127297_14127804 chrX - chrX_14127297_14127804 chrX_14127297_14127453;chrX_14127593_14127804 chrX_14127454_14127592 chrX_14127197_14127296;chrX_14127805_14127904 97.14 100.00 95.45 96.67 95.45 95.24 100.00 96.97 97.62 96.00 100.00 97.44 100.00 95.00 96.55 100.00 94.12 100.00 95.65 97.56 100.00 88.24 100.00 97.06 100.00 95.83 100.00 94.44 97.14 96.67 96.15 95.65 100.00 97.06 95.65 100.00 100.00 96.30 97.22 98.28 100.00 97.78 94.44 96.88 96.88 95.12 100.00 97.56 97.50 96.00 100.00 100.00 100.00 96.15 96.43 95.83 100.00 97.30 K intron_retention WASp,I_chr3R_24656400_24656715,I_chr3R_24656400_24656880,I_chr3R_24656400_24657416 chr3R - chr3R_24656400_24656880 chr3R_24656399_24656400;chr3R_24656880_24656881 chr3R_24656300_24656399;chr3R_24656881_24656909 45.80 50.00 NA 60.00 NA 38.46 69.23 NA 39.29 NA 60.00 58.82 NA NA NA 41.67 NA 46.15 NA 45.45 NA 33.33 29.17 33.33 61.54 NA 63.64 NA 42.86 23.08 61.54 NA NA 40.00 NA 78.57 33.33 NA 37.50 38.10 NA 50.00 NA NA 45.45 58.33 15.38 66.67 47.62 40.00 37.50 60.00 NA NA 50.00 NA NA 66.67 K jcn_only_AD Pk61C,CE_chr3L_129889_141769,I_chr3L_132531_133824,I_chr3L_133962_134014 chr3L + chr3L_132056_135457;chr3L_132531_135457;chr3L_131959_135457 chr3L_131934_135457 chr3L_135458_135842;chr3L_131849_131933 0.00 5.00 0.00 0.00 4.55 NA NA 0.00 3.57 NA NA 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA 5.88 NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K jcn_only_AD Atg6,I_chr3R_19876189_19876240 chr3R - chr3R_19876189_19876244 chr3R_19876189_19876240 chr3R_19876089_19876188;chr3R_19876245_19876340 0.00 9.09 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 3.33 7.41 0.00 0.00 4.00 0.00 3.70 NA 0.00 2.08 0.00 NA 0.00 4.55 2.78 0.00 7.14 0.00 0.00 0.00 0.00 0.00 2.70 3.23 0.00 0.00 0.00 0.00 NA 2.70 0.00 0.00 7.41 0.00 0.00 2.78 3.85 4.00 0.00 5.00 3.12 14.81 0.00 1.92 K intron_retention CG14997 chr3L + chr3L_4242091_4242143 chr3L_4242090_4242091;chr3L_4242143_4242144 chr3L_4241904_4242090;chr3L_4242144_4242568 0.00 NA NA 5.88 NA NA NA NA 10.53 NA NA 0.00 NA NA NA NA NA NA NA 8.00 NA NA 0.00 0.00 NA NA NA NA 0.00 0.00 NA 0.00 0.00 12.50 NA 7.14 0.00 4.55 4.76 0.00 NA 5.26 NA NA 4.00 0.00 13.04 NA 5.56 0.00 11.11 0.00 0.00 0.00 NA 0.00 0.00 5.88 K cassette gish,RI_chr3R_12118557_12122383 chr3R + chr3R_12118557_12122383 chr3R_12118557_12121390;chr3R_12121543_12122383 chr3R_12121391_12121542 chr3R_12118496_12118556;chr3R_12122384_12122483 66.67 66.67 63.16 56.41 85.71 66.67 55.56 47.22 70.27 87.50 75.00 86.36 52.63 70.59 81.82 51.22 60.00 50.00 61.11 79.07 80.00 52.63 78.57 66.67 66.67 77.78 61.54 60.00 60.00 90.91 65.00 75.00 81.82 61.29 76.47 84.62 75.00 83.33 53.85 80.00 66.67 71.43 63.64 66.67 66.67 75.00 88.89 71.43 64.86 50.00 60.87 81.82 66.67 63.64 71.43 50.00 75.00 78.57 K alternative_donor ben chrX + chrX_13890789_13892127;chrX_13891016_13892127;chrX_13890793_13892127;chrX_13890762_13892127;chrX_13890795_13892127;chrX_13890990_13892127;chrX_13890831_13892127;chrX_13890768_13892127;chrX_13890648_13892127 chrX_13890791_13892127 chrX_13892128_13892800;chrX_13890644_13890647 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 K alternative_acceptor CG10462 chr2L - chr2L_19732671_19732744 chr2L_19732677_19732744 chr2L_19732745_19733069;chr2L_19732573_19732670 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 97.37 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention mbc,I_chr3R_19615584_19615649,I_chr3R_19625220_19625288 chr3R + chr3R_19625681_19625739 chr3R_19625680_19625681;chr3R_19625739_19625740 chr3R_19625590_19625680;chr3R_19625740_19625910 0.86 0.00 2.50 1.53 0.00 0.00 2.86 1.69 0.00 0.00 0.00 3.55 4.17 0.00 2.50 0.86 0.00 0.00 1.43 0.81 0.00 2.27 1.54 1.72 0.00 0.00 10.00 0.00 4.88 4.26 1.37 0.00 3.92 2.38 2.13 4.44 2.22 0.00 0.00 4.35 3.92 1.39 0.00 5.26 0.00 1.08 0.00 0.00 1.63 0.00 0.00 0.00 0.00 0.00 4.29 0.00 0.00 9.52 K jcn_only_AA Flo-2 chrX + chrX_14733457_14734915 chrX_14733457_14734905 chrX_14733442_14733456;chrX_14734916_14735052 98.94 NA 100.00 100.00 NA NA NA 96.55 100.00 NA NA NA NA NA 95.83 100.00 100.00 NA NA 95.83 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 97.87 NA NA NA NA NA NA 94.12 NA NA NA NA NA 90.48 NA NA NA K intron_retention ALiX,I_chr3R_23531574_23532266 chr3R - chr3R_23525276_23525489 chr3R_23525275_23525276;chr3R_23525489_23525490 chr3R_23525157_23525275;chr3R_23525490_23525863 2.47 0.00 3.28 1.97 2.15 0.00 3.00 1.61 1.57 8.93 1.03 1.45 2.56 0.00 1.39 1.04 0.00 0.80 1.95 1.27 2.04 6.55 4.24 4.13 5.06 1.38 4.83 3.81 2.11 3.88 6.04 2.47 1.55 1.39 2.04 3.03 5.13 4.29 5.00 4.89 3.45 1.91 2.88 4.88 2.82 1.57 2.90 4.13 1.55 3.41 4.00 2.60 0.00 0.00 2.58 2.50 1.83 1.61 K intron_retention bur,I_chr2L_21177679_21178250,I_chr2L_21177960_21179329 chr2L - chr2L_21175225_21175279 chr2L_21175224_21175225;chr2L_21175279_21175280 chr2L_21175033_21175224;chr2L_21175280_21175681 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261460_261555 chr4_261459_261460;chr4_261555_261556 chr4_261360_261459;chr4_261556_261609 100.00 NA NA 46.67 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3295176;chr2R_3294566_3295244;chr2R_3294566_3294636;chr2R_3294566_3294638;chr2R_3294566_3295280;chr2R_3294566_3294642;chr2R_3294566_3294714 chr2R_3294566_3294634 chr2R_3294491_3294565;chr2R_3295281_3295302 7.58 4.17 9.38 0.00 NA 11.11 2.86 5.88 6.10 NA 6.06 5.56 0.00 4.76 7.69 3.45 9.52 10.00 0.00 7.46 16.67 16.00 10.00 3.23 3.12 3.70 4.35 12.90 12.50 9.38 14.29 13.33 13.64 5.00 NA NA 4.65 0.00 12.20 3.64 7.69 9.43 18.18 3.12 2.50 14.29 0.00 16.67 13.43 9.09 11.11 7.14 5.71 NA 3.33 8.33 8.70 8.93 K jcn_only_AA CG9302,I_chr2L_13377616_13377699 chr2L - chr2L_13377616_13377699 chr2L_13377651_13377699 chr2L_13377700_13377799;chr2L_13377516_13377615 99.61 99.33 100.00 100.00 100.00 98.85 100.00 99.74 99.76 98.81 100.00 99.72 100.00 99.49 100.00 100.00 100.00 100.00 100.00 99.72 100.00 98.27 100.00 98.70 98.99 99.61 100.00 98.32 98.65 100.00 98.80 99.16 98.96 99.11 99.17 98.10 99.06 97.87 100.00 100.00 97.88 99.49 99.46 100.00 100.00 98.60 99.20 99.26 100.00 100.00 99.38 99.07 98.44 100.00 99.61 100.00 100.00 99.35 K multi_cassette lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22831575_22832085 chr2L_22831575_22831635;chr2L_22831820_22831885;chr2L_22832029_22832085 chr2L_22831636_22831819;chr2L_22831886_22832028 chr2L_22831506_22831574;chr2L_22832086_22832154 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 95.45 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 K alternative_acceptor Camta,RI_chr2R_5364752_5364878 chr2R + chr2R_5360671_5360742 chr2R_5360671_5360739 chr2R_5359324_5360670;chr2R_5360743_5361705 26.32 30.77 NA 26.32 25.00 NA 25.00 25.00 25.00 NA 36.36 33.33 NA NA NA NA 23.08 NA NA 33.33 NA 12.00 40.00 NA NA NA NA NA NA NA NA NA 17.39 25.00 NA 23.08 30.43 NA NA 31.58 NA 29.41 NA 26.67 NA 33.33 NA 33.33 10.53 NA 25.00 NA NA NA NA NA 28.57 21.43 K intron_retention CSN4 chr2R + chr2R_3860694_3860752 chr2R_3860693_3860694;chr2R_3860752_3860753 chr2R_3860054_3860693;chr2R_3860753_3861609 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.17 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 K intron_retention CG14642,CG34305 chr3R - chr3R_67642_67699 chr3R_67641_67642;chr3R_67699_67700 chr3R_67477_67641;chr3R_67700_67809 26.32 19.44 42.11 NA NA 27.78 30.77 16.00 25.00 23.53 NA 28.12 23.08 NA 26.67 NA 14.29 29.41 33.33 48.15 NA 38.46 25.00 21.15 47.83 46.15 20.00 33.33 39.47 19.44 26.32 23.53 29.79 37.50 21.43 47.83 17.39 19.15 17.39 28.24 28.21 25.00 31.58 16.33 33.33 32.08 17.50 27.87 40.00 22.89 22.92 12.00 12.50 20.00 33.33 21.05 10.34 35.48 K intron_retention cmet chr2L - chr2L_11262005_11262062 chr2L_11262004_11262005;chr2L_11262062_11262063 chr2L_11261511_11262004;chr2L_11262063_11262180 0.00 0.00 0.00 10.17 0.00 0.00 0.00 6.45 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 K alternative_acceptor Pros54 chr3L + chr3L_21530239_21530339 chr3L_21530239_21530310 chr3L_21530106_21530238;chr3L_21530340_21530480 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.43 0.00 1.64 2.27 0.00 0.00 0.76 5.88 0.00 0.00 0.00 1.48 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.71 2.60 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 2.22 0.00 0.00 0.00 4.35 0.00 2.44 0.00 0.00 K alternative_donor CG10992,RI_chrX_13675767_13676018 chrX - chrX_13675767_13675872;chrX_13675767_13675842 chrX_13675767_13676018 chrX_13675699_13675766;chrX_13676019_13676118 0.00 0.00 0.00 0.29 0.00 0.42 0.30 0.00 0.00 0.00 0.00 0.22 0.77 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.34 0.26 0.27 0.51 0.00 0.39 0.00 0.00 0.56 0.45 0.00 0.51 0.00 0.47 0.00 0.00 0.40 0.26 0.32 0.00 0.00 0.00 0.00 0.52 0.00 0.34 0.72 0.00 0.00 0.34 0.49 0.00 0.50 0.32 0.41 0.00 0.69 K jcn_only_AD vig chr2L - chr2L_15067690_15067915;chr2L_15067690_15067952;chr2L_15067690_15067995;chr2L_15067690_15068029;chr2L_15067690_15067999 chr2L_15067690_15067868 chr2L_15066937_15067689;chr2L_15068030_15068031 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 K intron_retention I_chr4_335584_340074,CG32850,noncoding_20650,I_chr4_338996_340074,RI_chr4_340294_340597 chr4 + chr4_337136_340074 chr4_337135_337136;chr4_340074_340075 chr4_337038_337135;chr4_340075_340174 0.00 0.00 0.00 6.38 NA 5.00 8.70 4.08 11.54 NA NA 0.00 NA 4.76 4.55 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 2.82 NA NA NA NA 0.00 2.63 NA 9.09 6.25 0.00 0.00 3.33 0.00 0.00 0.00 5.56 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention B4,I_chr2L_13547304_13549131 chr2L - chr2L_13509105_13509466 chr2L_13509104_13509105;chr2L_13509466_13509467 chr2L_13508621_13509104;chr2L_13509467_13509792 4.44 0.00 NA 5.56 NA NA 16.00 0.00 3.12 0.00 NA 7.14 NA NA NA 20.00 NA NA NA 4.44 NA 0.00 5.71 0.00 0.00 NA 15.00 4.76 8.51 0.00 NA NA 0.00 6.25 0.00 0.00 3.57 0.00 4.00 7.55 13.33 10.71 NA 0.00 12.50 NA NA 5.66 3.33 7.14 5.26 NA 0.00 NA NA NA NA 6.67 K intron_retention CG32037 chr3L - chr3L_9483916_9484573 chr3L_9483915_9483916;chr3L_9484573_9484574 chr3L_9483666_9483915;chr3L_9484574_9484726 3.22 0.00 NA NA 0.00 10.53 13.04 14.29 0.00 0.00 0.00 6.67 NA NA 9.09 NA 14.29 17.65 NA 0.00 0.00 9.52 0.00 3.51 NA NA 9.09 NA 0.00 0.00 11.54 0.00 0.00 0.00 NA 12.50 5.41 0.00 12.12 5.56 0.00 5.00 0.00 0.00 0.00 8.57 7.14 2.94 22.22 0.00 10.00 NA 14.29 0.00 0.00 8.00 5.56 0.00 K alternative_donor CG5694,RI_chr2L_10229956_10231366 chr2L - chr2L_10229956_10231282;chr2L_10229956_10231538 chr2L_10229956_10231394 chr2L_10229856_10229955;chr2L_10231539_10231648 6.25 6.67 0.00 0.00 0.00 15.38 11.11 3.12 6.67 20.00 0.00 0.00 5.00 0.00 0.00 0.00 7.69 0.00 3.70 6.25 0.00 25.00 11.54 10.53 10.00 0.00 0.00 0.00 20.00 8.33 6.67 9.09 42.86 0.00 7.69 14.29 0.00 0.00 8.33 4.55 7.69 6.06 0.00 4.76 0.00 7.69 10.00 15.00 2.44 6.67 16.67 8.33 20.00 14.29 0.00 0.00 0.00 6.67 K jcn_only_AA l(1)G0222,FI_chrX_17466478_17466552,I_chrX_17473084_17473137 chrX - chrX_17466478_17466552 chrX_17466493_17466552 chrX_17466553_17466652;chrX_17466378_17466477 97.10 96.97 97.10 93.90 97.83 95.31 92.11 98.23 93.08 96.97 92.98 96.61 95.77 98.41 94.81 95.92 98.39 98.15 97.26 97.32 96.43 97.04 100.00 99.12 98.21 95.38 95.00 96.00 96.15 96.34 100.00 97.83 96.59 94.83 98.89 98.00 94.74 97.73 94.87 97.27 100.00 97.81 98.15 100.00 100.00 97.85 97.09 100.00 98.36 97.89 95.68 97.22 90.20 96.43 95.45 99.03 97.22 94.52 K intron_retention BicD,I_chr2L_17475843_17475910 chr2L - chr2L_17461844_17462167 chr2L_17461843_17461844;chr2L_17462167_17462168 chr2L_17461437_17461843;chr2L_17462168_17462342 1.18 1.18 4.35 0.00 0.00 3.80 2.56 1.98 0.00 0.00 4.76 2.56 0.00 2.04 1.10 2.13 2.00 0.00 1.56 2.11 0.00 2.73 0.00 0.00 0.00 0.00 3.03 4.71 6.52 1.56 2.50 3.08 0.00 0.95 0.00 1.49 0.00 1.68 0.00 0.84 4.08 1.38 0.00 1.94 1.09 0.00 0.99 0.00 1.44 1.45 1.82 0.00 1.82 0.00 5.26 0.93 0.00 0.00 K jcn_only_AD CG42533,EI_chr2L_7473200_7473297,RI_chr2L_7473200_7473419,F_chr2L_7476906_7476978 chr2L - chr2L_7473200_7473297;chr2L_7473200_7473770;chr2L_7473200_7473419 chr2L_7473200_7473656 chr2L_7473100_7473199;chr2L_7473771_7473889 5.48 0.00 7.89 24.00 NA 0.00 4.08 6.00 6.82 0.00 3.70 5.71 0.00 7.69 7.41 6.38 3.57 16.00 4.65 4.65 4.35 6.38 11.63 6.06 0.00 9.52 11.43 NA 10.20 2.86 6.25 5.00 8.16 7.02 6.25 17.07 5.88 5.00 5.00 5.48 5.45 1.28 0.00 4.44 4.35 5.26 9.38 2.02 14.81 4.08 4.76 12.50 14.29 4.35 10.26 16.13 5.00 4.85 K intron_retention Marf,I_chrX_6263726_6263783 chrX + chrX_6263486_6263554 chrX_6263485_6263486;chrX_6263554_6263555 chrX_6262559_6263485;chrX_6263555_6263725 0.00 2.13 0.00 0.00 0.00 1.45 0.00 3.75 0.94 2.06 0.00 0.91 0.00 0.00 1.54 0.00 0.00 1.56 0.00 0.00 0.00 0.00 1.36 1.33 0.00 0.00 1.83 3.45 0.79 0.00 0.00 2.86 0.00 2.17 0.00 0.00 1.03 0.00 1.04 1.18 0.00 0.00 0.00 0.00 0.00 2.80 0.00 0.89 0.84 1.74 0.00 0.00 1.94 0.93 0.00 0.00 0.00 0.00 K alternative_donor CG9674,I_chr3L_16793055_16793171,I_chr3L_16793055_16793190,I_chr3L_16793055_16800660 chr3L - chr3L_16793055_16793200;chr3L_16793055_16793173 chr3L_16793055_16793196 chr3L_16792955_16793054;chr3L_16793201_16793268 0.00 NA NA 0.00 NA NA 3.70 4.55 5.88 NA 0.00 NA NA NA NA 0.00 NA NA 0.00 4.35 NA 3.23 0.00 NA NA NA 9.09 0.00 0.00 NA 4.55 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA K intron_retention ca,CG7802 chr3R + chr3R_25637911_25637977 chr3R_25637910_25637911;chr3R_25637977_25637978 chr3R_25637829_25637910;chr3R_25637978_25638211 0.00 0.00 0.00 10.17 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 4.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 8.89 20.00 3.23 0.00 0.00 0.00 0.00 2.04 3.33 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 5.77 0.00 3.85 0.00 7.14 0.00 0.00 0.00 K jcn_only_AA CG4747 chr2L + chr2L_10007179_10007254 chr2L_10007179_10007251 chr2L_10006908_10007178;chr2L_10007255_10007341 23.35 18.15 25.79 26.45 25.47 22.22 24.86 20.78 24.86 27.21 22.11 25.62 23.04 25.00 23.05 23.22 20.50 27.64 19.52 21.37 23.83 16.79 24.79 22.11 19.68 26.72 25.00 14.75 21.98 21.76 26.87 22.16 23.16 22.44 25.70 29.91 20.71 25.67 29.25 23.81 23.35 22.81 25.13 24.21 20.35 24.64 19.17 20.40 25.40 25.61 19.68 24.89 31.21 23.84 24.76 21.05 21.46 22.89 K intron_retention CG33298 chr2L + chr2L_9519480_9519719 chr2L_9519479_9519480;chr2L_9519719_9519720 chr2L_9519394_9519479;chr2L_9519720_9520654 0.00 0.00 7.32 0.00 0.00 0.00 3.57 1.12 2.02 0.00 2.70 3.28 2.00 1.92 0.00 0.00 0.00 0.00 0.00 2.82 2.38 3.66 5.00 0.00 0.00 5.26 0.00 0.00 8.33 0.00 0.00 4.55 6.06 3.37 0.00 9.09 5.00 0.00 0.00 3.28 0.00 5.15 0.00 0.00 0.00 8.57 6.25 0.00 1.54 3.77 8.33 0.00 0.00 0.00 0.00 2.94 0.00 0.00 K alternative_acceptor Cp190,I_chr3R_11100788_11100846,F_chr3R_11104164_11104239 chr3R - chr3R_11100321_11100846;chr3R_11100334_11100846 chr3R_11100788_11100846 chr3R_11100847_11100931;chr3R_11099837_11100320 12.50 17.24 11.63 8.62 16.00 17.65 18.87 11.67 13.33 6.67 8.11 9.59 10.81 10.81 16.22 13.11 15.62 7.50 13.16 9.48 15.38 12.50 14.06 18.18 9.09 13.51 19.51 23.40 10.42 14.00 13.16 10.71 12.31 15.38 11.11 6.00 16.67 20.00 14.29 12.24 7.41 13.24 14.81 10.81 5.41 10.42 10.64 6.93 15.87 12.90 16.13 12.50 10.26 12.12 13.04 12.50 16.13 3.85 K alternative_donor CG32809,RI_chrX_1585391_1586471,a6,I_chrX_1589508_1589564 chrX - chrX_1589508_1589572 chrX_1589508_1589564 chrX_1589408_1589507;chrX_1589573_1589664 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.35 NA NA 0.00 0.00 2.22 NA 0.00 3.03 0.00 0.00 0.00 8.00 35.71 3.23 0.00 0.00 NA 3.33 0.00 0.00 7.69 2.33 0.00 3.23 2.27 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 NA 0.00 0.00 0.00 0.00 6.25 0.00 K intron_retention gro chr3R + chr3R_21868266_21868716 chr3R_21868265_21868266;chr3R_21868716_21868717 chr3R_21868197_21868265;chr3R_21868717_21869101 91.99 NA NA 100.00 NA NA 91.67 87.50 94.12 NA NA 100.00 88.89 NA 90.00 93.75 NA 100.00 90.00 90.91 NA NA 88.89 NA NA NA NA NA 90.91 NA 100.00 NA 100.00 100.00 88.89 NA NA 100.00 NA 92.31 NA 92.86 NA NA NA NA NA 91.67 91.67 NA 88.89 NA NA NA 100.00 NA NA NA K intron_retention CG17593 chr2L + chr2L_3516269_3516329 chr2L_3516268_3516269;chr2L_3516329_3516330 chr2L_3515720_3516268;chr2L_3516330_3516677 0.00 1.28 0.00 3.70 0.00 0.00 0.81 0.00 1.16 0.00 0.00 0.61 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 3.12 1.82 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor ND23,I_chr3R_11662529_11662629 chr3R - chr3R_11662529_11662711 chr3R_11662529_11662629 chr3R_11662429_11662528;chr3R_11662712_11662729 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.91 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 K jcn_only_AD RpL27,I_chr3R_21510239_21510298,RI_chr3R_21510239_21510441,I_chr3R_21510239_21510464,I_chr3R_21510239_21510656,I_chr3R_21510239_21510726 chr3R - chr3R_21510239_21510464;chr3R_21510239_21510739;chr3R_21510239_21510680;chr3R_21510239_21510298;chr3R_21510239_21510746 chr3R_21510239_21510656 chr3R_21510139_21510238;chr3R_21510747_21510756 0.00 0.00 5.00 0.00 2.04 2.08 1.85 0.00 2.25 0.00 0.00 1.43 7.14 0.00 0.96 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 1.47 5.47 0.00 0.00 0.00 0.00 1.83 0.00 0.00 2.82 0.00 1.79 0.90 2.82 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 7.69 0.00 0.00 4.76 0.00 1.92 1.00 0.55 K alternative_acceptor CG3829,I_chr2R_20875497_20875710 chr2R + chr2R_20877407_20877470 chr2R_20877407_20877465 chr2R_20876815_20877406;chr2R_20877471_20877967 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 100.00 100.00 100.00 100.00 NA 96.67 100.00 NA NA NA 100.00 100.00 100.00 NA NA NA NA NA NA 87.50 100.00 NA 100.00 100.00 NA 100.00 NA 92.86 100.00 NA 100.00 87.50 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA NA K intron_retention CG17271,I_chr3R_16645217_16645392,RI_chr3R_16647104_16647149 chr3R - chr3R_16647089_16647149 chr3R_16647088_16647089;chr3R_16647149_16647150 chr3R_16647021_16647088;chr3R_16647150_16647218 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG11790,CG11791 chr3R + chr3R_20876091_20876902;chr3R_20876340_20876902 chr3R_20875669_20876902 chr3R_20876903_20877278;chr3R_20875600_20875668 20.69 20.69 7.41 21.28 39.29 11.11 20.97 10.20 14.78 24.44 6.98 9.57 22.73 5.66 12.20 17.02 7.69 32.00 14.52 12.36 2.27 11.48 22.86 16.67 NA NA 10.64 21.05 31.43 17.02 10.53 29.03 14.71 9.41 21.05 25.00 27.12 15.38 21.74 31.96 36.54 15.29 14.29 27.54 31.88 25.33 19.75 45.16 7.87 22.68 24.59 18.92 33.87 10.20 24.53 21.92 23.53 52.53 K jcn_only_AA hkl chr2L + chr2L_19046143_19046214 chr2L_19046143_19046206 chr2L_19045522_19046142;chr2L_19046215_19047047 74.07 NA NA NA NA NA NA NA 74.07 NA NA NA NA NA NA NA NA NA NA 72.00 NA 85.71 NA NA NA NA NA NA NA 86.36 86.36 NA 56.52 NA NA NA NA NA NA 79.17 NA 57.14 NA 70.00 NA NA NA 70.83 NA 76.19 NA 66.67 NA NA NA NA NA 80.65 K jcn_only_AA SC35,I_chr2L_12432222_12432308 chr2L - chr2L_12432205_12432308 chr2L_12432222_12432308 chr2L_12432309_12432408;chr2L_12432122_12432204 0.26 0.00 0.48 1.09 0.00 0.00 0.00 1.79 0.28 0.96 0.64 0.00 0.00 0.00 0.00 0.51 0.81 0.00 0.67 0.26 0.60 0.00 0.30 0.00 1.13 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.43 0.00 0.00 0.53 0.00 0.60 0.31 0.68 0.31 0.79 0.00 0.67 0.00 0.00 1.25 0.30 0.66 0.00 0.00 1.59 1.05 0.00 0.35 0.00 0.00 K jcn_only_AD CG31431 chr3R + chr3R_17696656_17697703;chr3R_17696730_17697703;chr3R_17696702_17697703 chr3R_17696581_17697703 chr3R_17697704_17697862;chr3R_17696406_17696580 4.23 3.40 6.99 5.93 3.79 3.36 4.48 6.18 4.23 7.27 5.00 4.86 2.88 5.24 4.04 7.23 3.91 8.99 5.82 5.71 1.63 4.76 10.37 5.88 0.00 3.23 3.87 3.80 7.14 9.09 7.04 1.37 4.76 3.10 6.82 1.79 3.33 4.00 4.93 6.29 5.10 2.75 5.22 1.91 1.22 4.90 4.81 1.85 3.12 7.00 5.99 2.86 0.00 1.49 4.12 3.67 3.81 0.00 K intron_retention Hil chr2R - chr2R_16495088_16495174 chr2R_16495087_16495088;chr2R_16495174_16495175 chr2R_16494386_16495087;chr2R_16495175_16495338 3.77 6.15 1.75 14.29 2.04 0.00 13.24 2.47 6.03 0.00 8.89 2.63 5.77 0.00 7.41 5.88 3.77 3.57 3.77 3.76 4.88 11.11 1.28 3.03 3.23 6.78 8.47 12.12 12.50 0.00 3.17 4.55 6.12 5.06 2.56 5.71 0.98 0.00 5.32 4.35 9.09 3.81 0.00 0.00 5.63 1.67 1.75 1.75 3.85 3.12 4.62 0.00 5.71 0.00 2.82 3.03 3.77 1.64 K alternative_donor Galpha49B,I_chr2R_8501587_8501648,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500357_8501759 chr2R_8500390_8501759 chr2R_8501760_8501850;chr2R_8500333_8500356 88.89 NA 100.00 84.62 NA NA 87.50 90.00 94.44 NA 88.89 90.91 85.71 NA 88.89 87.50 NA 88.89 85.71 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA 90.00 NA NA 100.00 NA NA NA NA NA NA NA 76.92 NA NA NA NA NA NA 80.00 NA NA NA NA NA 87.50 NA NA NA N cassette Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19553559_19561808 chr2R_19553559_19559498;chr2R_19559612_19561808 chr2R_19559499_19559611 chr2R_19553474_19553558;chr2R_19561809_19561865 100.00 100.00 100.00 94.54 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.31 100.00 100.00 100.00 100.00 100.00 100.00 77.14 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N cassette Nos,I_chr2L_10826086_10826539 chr2L - chr2L_10817145_10822967 chr2L_10817145_10818391;chr2L_10818567_10822967 chr2L_10818392_10818566 chr2L_10816983_10817144;chr2L_10822968_10823002 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 72.09 90.00 75.00 NA NA NA NA 70.00 85.71 NA NA 81.82 NA 83.33 NA 88.89 NA 75.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA K jcn_only_AD Gbeta13F,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,RI_chrX_15755345_15755409 chrX + chrX_15755520_15755598 chrX_15755526_15755598 chrX_15755599_15756919;chrX_15755417_15755519 95.31 95.72 93.59 95.85 95.06 96.40 96.74 94.50 97.24 94.39 95.00 95.31 94.32 94.55 96.86 94.76 98.31 96.58 95.45 95.19 94.57 96.83 95.92 95.38 97.20 97.60 93.81 93.67 90.67 97.67 95.76 92.45 91.57 94.86 93.48 94.74 93.29 95.73 95.57 95.75 88.46 96.10 94.44 94.48 93.62 93.55 95.45 98.65 94.38 97.85 94.55 96.12 95.33 96.08 94.82 94.12 96.13 98.21 K intron_retention CG11198 chr2R - chr2R_3862330_3862390 chr2R_3862329_3862330;chr2R_3862390_3862391 chr2R_3862195_3862329;chr2R_3862391_3862738 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11123,sPLA2 chr2R + chr2R_3328474_3328531 chr2R_3328473_3328474;chr2R_3328531_3328532 chr2R_3328217_3328473;chr2R_3328532_3330502 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 3.85 3.06 8.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention MB6.chr2L.pasa.1473 chr2L - chr2L_14360642_14360707 chr2L_14360641_14360642;chr2L_14360707_14360708 chr2L_14359285_14360641;chr2L_14360708_14361303 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 96.88 100.00 100.00 96.88 100.00 97.73 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 95.83 100.00 100.00 95.65 100.00 100.00 96.15 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG32000,RI_chr4_153025_153811,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_152914_153811 chr4_152913_152914;chr4_153811_153812 chr4_152891_152913;chr4_153812_153855 18.75 NA 0.00 35.29 NA NA 17.78 23.26 18.75 NA NA 18.92 63.64 18.18 NA 25.00 NA NA 18.18 18.42 NA NA NA NA NA NA NA NA NA NA NA NA 7.41 19.05 NA NA NA NA NA 20.00 NA 33.33 25.00 NA NA NA NA 7.69 16.95 NA NA NA NA NA NA NA NA 17.39 K cassette CG9339,I_chr2L_20877678_20903015,I_chr2L_20882465_20889794,I_chr2L_20903560_20918638,I_chr2L_20922613_20922685 chr2L - chr2L_20874433_20876911 chr2L_20874433_20875079;chr2L_20875137_20876911 chr2L_20875080_20875136 chr2L_20874274_20874432;chr2L_20876912_20877083 0.00 0.00 1.23 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.99 1.67 0.00 0.95 2.08 1.04 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RpS3A,I_chr4_87364_87465,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87533_87673;chr4_87533_87769;chr4_87533_87717 chr4_87533_87757 chr4_87466_87532;chr4_87770_87817 19.58 22.97 23.14 29.56 24.51 22.71 33.11 22.13 31.54 16.35 23.20 17.93 23.15 31.83 18.36 26.13 NA 32.56 37.20 38.13 23.74 19.14 13.27 17.28 12.91 22.00 11.64 9.84 9.80 27.47 11.70 15.78 10.35 29.15 12.21 NA NA 19.93 13.22 13.51 10.12 26.62 33.17 NA 18.59 15.85 11.86 12.78 41.21 12.30 8.77 NA 11.24 10.05 21.63 23.57 19.23 32.32 K alternative_donor CG34347 chr3R + chr3R_27186956_27192564 chr3R_27188081_27192564 chr3R_27192565_27192574;chr3R_27186940_27186955 100.00 100.00 NA 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 90.91 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Dip-B chr3R + chr3R_9608174_9608429 chr3R_9608173_9608174;chr3R_9608429_9608430 chr3R_9608012_9608173;chr3R_9608430_9608563 3.51 4.44 5.26 3.20 4.55 2.53 9.38 4.69 3.94 5.56 5.88 2.76 4.17 0.00 3.06 3.76 6.82 4.17 5.06 3.59 3.39 1.12 3.61 2.70 6.82 5.06 8.33 7.81 2.90 3.45 3.03 6.78 2.41 2.50 0.00 3.51 4.17 3.92 5.17 3.38 5.41 3.82 3.17 2.27 2.50 2.61 0.00 3.16 2.21 3.28 2.67 2.70 3.57 3.51 6.19 3.70 2.15 0.00 K intron_retention CG9945,CG16742 chr2R + chr2R_16506726_16506785 chr2R_16506725_16506726;chr2R_16506785_16506786 chr2R_16506461_16506725;chr2R_16506786_16506932 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 4.55 0.00 0.00 0.00 0.00 12.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr2R_9844856_9845327,CG13349,RI_chr2R_9846641_9846709 chr2R - chr2R_9846605_9846709 chr2R_9846604_9846605;chr2R_9846709_9846710 chr2R_9846541_9846604;chr2R_9846710_9846809 33.33 27.33 31.52 41.98 27.18 25.77 33.33 45.26 33.68 33.33 26.14 27.47 30.99 47.62 40.74 36.76 27.27 35.11 38.75 33.48 29.89 48.80 29.56 29.59 43.33 50.46 60.57 49.61 58.65 26.74 35.42 36.72 31.29 26.67 33.88 44.14 26.49 27.05 31.65 35.66 44.39 30.00 37.84 40.52 29.15 37.36 31.41 46.67 37.50 27.81 32.05 32.26 30.97 36.77 28.70 31.52 31.36 38.38 K alternative_donor f-cup,RI_chr3R_9522069_9522165,I_chr3R_9524004_9524059,EI_chr3R_9524613_9524789 chr3R - chr3R_9522069_9522160;chr3R_9522069_9522163;chr3R_9522069_9522158 chr3R_9522069_9522165 chr3R_9521969_9522068;chr3R_9522166_9522265 24.29 NA NA 28.57 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor I_chrX_1757755_1757801,RI_chrX_1770945_1771037,CG14818,RI_chrX_1773382_1773444,trr,I_chrX_1793073_1794406,RI_chrX_1795648_1795745 chrX - chrX_1773382_1773444 chrX_1773384_1773444 chrX_1773445_1773544;chrX_1773282_1773381 98.48 99.02 96.30 98.13 98.46 98.84 98.02 98.02 99.34 98.31 97.14 97.63 97.40 98.59 98.81 98.94 98.18 100.00 98.70 98.14 91.78 100.00 99.12 98.04 98.67 98.86 99.01 97.85 98.85 97.22 100.00 98.31 97.92 100.00 98.53 96.30 97.35 98.99 98.48 99.10 98.70 99.37 98.08 100.00 97.35 99.21 99.12 100.00 98.63 98.10 96.46 96.88 98.75 96.55 100.00 96.85 97.79 97.96 K intron_retention dco,RI_chr3R_26883647_26884261,RI_chr3R_26883651_26886096,I_chr3R_26884350_26884670,I_chr3R_26884350_26886671,I_chr3R_26884350_26886791,RI_chr3R_26884365_26886096,I_chr3R_26884365_26886798 chr3R - chr3R_26884350_26886798 chr3R_26884349_26884350;chr3R_26886798_26886799 chr3R_26884265_26884349;chr3R_26886799_26886891 10.76 10.71 9.09 7.84 13.33 0.00 12.00 11.43 13.21 13.33 0.00 10.00 12.50 9.09 12.50 13.51 12.50 NA 6.25 14.58 7.41 28.57 10.87 21.05 9.52 20.00 21.62 14.29 26.47 4.65 0.00 9.52 9.09 10.81 10.71 6.45 9.38 19.05 17.14 12.77 17.24 10.81 10.53 15.15 9.09 7.14 6.78 11.36 10.42 14.81 10.42 16.67 12.50 0.00 0.00 8.00 8.33 3.33 K alternative_donor Zyx102EF,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1081261_1081398;chr4_1081261_1081366 chr4_1081261_1081364 chr4_1081180_1081260;chr4_1081399_1081402 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_donor I_chr2L_8213024_8213227,CG8360 chr2L + chr2L_8213261_8213336 chr2L_8213283_8213336 chr2L_8213337_8213402;chr2L_8213228_8213260 87.72 84.00 92.86 80.77 92.31 88.89 90.00 83.72 97.78 90.00 93.75 88.10 94.12 95.83 86.67 81.25 91.67 92.31 100.00 88.00 83.33 87.72 80.00 82.93 93.33 100.00 84.62 88.89 89.29 69.57 58.93 80.00 69.70 89.19 84.62 75.86 83.72 82.86 86.21 78.05 83.72 97.37 93.75 85.71 86.21 89.74 92.86 73.91 91.89 86.21 84.00 82.14 90.00 88.24 96.55 88.37 87.30 87.50 N jcn_only_AA CG6664 chr3L - chr3L_17007987_17008086 chr3L_17008005_17008086 chr3L_17008087_17008177;chr3L_17007093_17007986 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 84.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG14613,I_chrX_21882735_21883714 chrX - chrX_21873124_21873184 chrX_21873123_21873124;chrX_21873184_21873185 chrX_21872978_21873123;chrX_21873185_21873823 0.00 0.00 0.00 2.90 0.00 0.00 0.00 4.00 2.11 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 3.30 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11837971_11838662 chr2R_11838019_11838662 chr2R_11838663_11838663;chr2R_11837919_11837970 3.75 4.22 2.38 7.78 0.00 2.86 16.53 6.06 6.76 1.82 1.77 2.71 3.45 5.56 4.90 2.78 4.04 3.36 6.45 2.41 1.83 35.34 2.74 3.03 3.14 13.45 1.74 1.39 6.28 2.54 1.64 4.08 3.45 5.00 2.10 3.91 3.90 2.94 3.75 2.22 8.88 4.76 7.41 2.28 4.44 4.00 4.30 3.95 4.89 3.33 1.65 8.20 1.03 4.93 7.04 4.79 1.87 1.25 K jcn_only_AD CG9932,I_chr2L_13025498_13027193,I_chr2L_13031395_13035824 chr2L - chr2L_13025498_13026528;chr2L_13025498_13027344 chr2L_13025498_13027065 chr2L_13025398_13025497;chr2L_13027345_13027744 25.81 18.33 36.84 30.30 17.39 41.82 30.65 46.34 23.81 15.62 46.34 37.62 59.52 26.32 27.12 30.30 40.00 27.91 44.68 32.95 34.29 18.18 21.70 20.59 17.46 23.26 25.00 22.97 30.30 29.82 31.58 29.17 23.08 28.57 25.81 19.64 20.18 9.52 18.81 3.80 23.26 32.23 14.29 25.32 32.00 27.08 19.70 27.78 30.15 22.97 20.29 16.67 19.57 23.81 35.48 22.03 16.67 38.71 K alternative_donor Hel25E,I_chr2L_5540301_5540396 chr2L - chr2L_5540301_5540971;chr2L_5540301_5540396 chr2L_5540301_5540424 chr2L_5540201_5540300;chr2L_5540972_5541090 5.49 4.07 4.84 4.81 3.15 3.34 5.24 4.29 3.28 9.19 3.31 4.25 4.90 5.30 4.60 6.90 5.93 3.06 4.13 3.17 3.11 8.05 6.22 7.38 6.69 2.69 9.26 10.51 5.49 4.42 17.98 8.40 9.88 5.74 6.09 7.49 5.67 4.32 5.14 7.20 13.17 4.87 4.30 10.49 7.08 6.23 6.02 14.05 4.88 5.19 6.11 5.88 5.62 4.69 2.94 6.36 5.14 10.04 K intron_retention CG13933,I_chr3L_1773911_1773984 chr3L - chr3L_1771961_1772021 chr3L_1771960_1771961;chr3L_1772021_1772022 chr3L_1771853_1771960;chr3L_1772022_1772318 94.72 87.50 100.00 94.44 NA NA 100.00 100.00 100.00 NA NA 93.33 100.00 90.91 100.00 90.91 87.50 100.00 91.67 93.75 77.78 NA 94.44 100.00 100.00 NA 100.00 NA NA 80.00 85.71 NA 100.00 92.86 100.00 100.00 100.00 NA 90.00 93.33 NA 95.24 NA 100.00 90.00 100.00 100.00 NA 95.00 100.00 100.00 91.67 100.00 92.86 90.91 90.91 94.12 91.67 K cassette SpdS,I_chr3R_5457577_5457950 chr3R + chr3R_5457577_5458098 chr3R_5457577_5457828;chr3R_5458023_5458098 chr3R_5457829_5458022 chr3R_5457477_5457576;chr3R_5458099_5458909 11.63 16.67 7.41 2.94 7.69 9.09 11.63 17.14 10.00 13.04 42.86 20.00 16.67 9.52 13.79 8.89 13.04 25.00 22.22 8.06 21.43 9.52 3.23 15.69 11.76 4.55 13.95 11.63 6.25 4.76 43.75 11.54 8.00 12.07 9.68 0.00 7.69 16.00 5.88 20.59 7.14 8.06 9.09 13.04 12.50 10.81 5.88 11.11 13.73 16.33 19.57 19.05 6.82 12.50 14.71 15.62 6.38 11.54 K alternative_donor RpL27A,E_chr2L_4457411_4457977,I_chr2L_4458058_4458120 chr2L - chr2L_4458058_4458288;chr2L_4458058_4458140;chr2L_4458058_4458162 chr2L_4458058_4458274 chr2L_4457978_4458057;chr2L_4458289_4458357 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.64 0.83 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.15 0.41 0.00 0.83 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.70 K alternative_donor ran,I_chrX_11040449_11042518,I_chrX_11040462_11041873,I_chrX_11040462_11042000 chrX - chrX_11040462_11042000;chrX_11040462_11041873 chrX_11040462_11042518 chrX_11040362_11040461;chrX_11042519_11042618 99.84 99.86 99.87 99.77 100.00 99.64 99.90 99.91 99.87 99.69 100.00 99.84 100.00 99.84 99.88 99.81 99.81 100.00 100.00 99.86 100.00 99.76 99.88 99.78 99.82 99.87 99.79 98.87 99.58 99.79 99.87 99.77 99.59 99.81 99.82 100.00 99.36 99.83 99.64 99.53 99.68 99.93 100.00 99.84 100.00 99.75 100.00 99.30 99.93 99.78 99.78 99.78 100.00 99.85 99.88 99.77 99.91 99.63 K intron_retention CG12030,Rev1 chr3L + chr3L_657586_657649 chr3L_657585_657586;chr3L_657649_657650 chr3L_656898_657585;chr3L_657650_657975 6.67 7.48 6.67 10.97 9.26 14.93 10.95 11.31 10.00 3.92 3.70 9.03 7.46 10.71 11.34 8.87 14.10 6.32 10.62 5.56 3.00 6.31 6.99 3.76 6.67 7.00 11.90 12.20 4.05 7.48 11.67 3.38 4.09 9.29 7.14 5.92 4.26 0.00 1.33 2.93 5.05 8.50 11.69 3.79 5.38 4.91 3.73 7.39 9.71 2.84 3.57 3.70 4.44 2.50 7.44 5.07 3.47 7.56 N jcn_only_AA None chrU + chrU_1179335_1184352;chrU_1179335_1183262 chrU_1179335_1184082 3.17 4.96 2.15 10.00 3.77 1.33 2.93 5.54 3.95 2.63 5.06 2.53 4.17 4.86 2.65 1.74 1.73 5.36 3.20 3.05 2.11 5.26 6.06 4.65 3.17 1.50 0.76 6.00 0.83 2.00 13.53 1.74 0.00 1.92 2.08 1.75 5.75 2.82 5.00 1.68 4.24 2.45 3.68 1.02 6.38 2.86 4.82 3.46 1.75 8.82 4.79 3.12 3.57 2.63 3.20 7.87 13.56 2.88 K intron_retention CG15173,RI_chr2L_19044304_19044369 chr2L - chr2L_19044318_19044369 chr2L_19044317_19044318;chr2L_19044369_19044370 chr2L_19044154_19044317;chr2L_19044370_19044469 0.00 NA NA 9.09 NA NA 0.00 NA 0.00 NA NA 11.11 NA NA NA 20.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 K intron_retention Neu3,F_chr3R_10498229_10498337 chr3R - chr3R_10497526_10498144 chr3R_10497525_10497526;chr3R_10498144_10498145 chr3R_10497331_10497525;chr3R_10498145_10498228 3.19 2.27 5.88 4.72 3.09 3.01 6.02 3.10 4.17 0.00 4.11 3.36 7.25 3.76 3.92 4.48 3.19 3.85 5.41 5.04 5.38 3.43 1.71 0.92 0.64 4.12 4.02 4.32 0.00 1.19 4.81 0.00 1.77 4.10 3.05 4.86 1.75 1.23 0.94 3.24 3.49 3.67 4.30 2.05 1.71 2.45 0.00 2.08 4.42 4.12 1.02 0.00 0.00 1.83 3.39 0.00 0.00 2.50 K intron_retention Sap47,I_chr3R_11782899_11785041,I_chr3R_11783642_11784655 chr3R + chr3R_11780928_11781711 chr3R_11780927_11780928;chr3R_11781711_11781712 chr3R_11780809_11780927;chr3R_11781712_11782029 0.00 5.41 0.00 10.00 0.00 0.00 10.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 9.09 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 2.17 0.00 K intron_retention CG40351,CREFI_chr3LHet_606442_607073 chr3LHet + chr3LHet_595061_595115 chr3LHet_595060_595061;chr3LHet_595115_595116 chr3LHet_594780_595060;chr3LHet_595116_595365 4.26 0.00 0.00 4.26 12.50 0.00 4.17 8.33 2.99 6.67 0.00 8.51 0.00 0.00 0.00 4.76 0.00 0.00 0.00 6.06 0.00 15.38 8.33 0.00 4.55 13.33 2.86 32.26 4.76 10.00 0.00 NA 3.23 6.98 6.67 0.00 5.41 4.55 0.00 14.00 18.75 3.39 4.17 8.33 NA 14.29 NA 2.56 8.89 NA 3.12 5.56 NA NA 2.50 NA NA 12.50 K intron_retention CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_120365_120420 chr2L_120364_120365;chr2L_120420_120421 chr2L_120168_120364;chr2L_120421_120430 36.18 39.29 30.00 38.24 42.86 36.36 38.89 40.00 50.85 NA 34.62 47.37 30.00 32.43 33.33 55.10 30.00 47.06 35.90 40.00 30.43 9.09 67.74 31.43 41.38 NA 47.50 53.33 43.75 31.25 30.77 21.43 30.00 33.93 43.75 52.17 30.00 47.83 25.00 25.00 41.67 28.07 37.50 36.84 NA 25.00 31.58 36.00 33.33 33.33 42.11 39.13 NA NA 52.00 31.25 37.50 12.50 K intron_retention CG9323 chr2L - chr2L_20754751_20754808 chr2L_20754750_20754751;chr2L_20754808_20754809 chr2L_20754579_20754750;chr2L_20754809_20754937 11.76 NA NA 28.57 NA NA 23.81 27.27 14.29 NA NA 22.22 NA NA NA NA 12.50 NA NA 19.05 NA NA NA 0.00 NA NA 17.65 NA NA NA NA NA NA 19.05 NA 15.38 NA NA NA 0.00 NA 14.81 NA 0.00 7.69 4.35 0.00 NA 0.00 0.00 0.00 NA NA 6.25 11.76 NA 0.00 NA K intron_retention CG42553,I_chr3L_834336_834491 chr3L + chr3L_834719_834778 chr3L_834718_834719;chr3L_834778_834779 chr3L_834650_834718;chr3L_834779_834846 0.00 0.00 0.00 2.44 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 1.67 0.00 0.00 5.26 5.19 0.78 0.00 0.00 0.00 0.00 1.61 0.00 3.51 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 1.16 0.00 0.00 2.63 2.00 1.23 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 K alternative_donor CG7632 chr3L + chr3L_21298066_21298178 chr3L_21298120_21298178 chr3L_21298179_21299298;chr3L_21297817_21298065 92.59 100.00 93.75 93.33 90.91 76.47 96.30 93.10 81.58 92.86 100.00 94.74 92.86 90.91 94.44 92.00 86.67 84.62 100.00 92.00 100.00 100.00 80.95 100.00 76.92 100.00 94.12 88.00 70.59 100.00 90.91 100.00 90.00 93.10 100.00 91.67 100.00 92.86 100.00 93.33 90.00 90.62 90.91 92.31 NA 88.24 92.31 83.33 89.29 87.50 94.12 81.25 87.50 100.00 92.86 84.21 75.00 100.00 K alternative_acceptor CG13902,I_chr3L_840962_841041 chr3L - chr3L_840962_841041;chr3L_840991_841041 chr3L_840970_841041 chr3L_841042_841141;chr3L_840862_840961 6.67 9.09 0.00 6.25 0.00 0.00 0.00 7.41 4.17 12.50 10.00 6.67 8.33 8.33 6.67 0.00 0.00 0.00 0.00 3.12 15.38 18.18 0.00 11.11 0.00 0.00 0.00 12.50 0.00 6.25 11.76 6.25 5.26 0.00 0.00 15.38 6.67 0.00 6.25 10.53 6.67 6.67 9.09 7.69 7.69 10.53 0.00 5.26 8.33 20.00 6.67 0.00 18.18 23.08 5.88 7.14 8.33 5.26 K jcn_only_AD gish chr3R + chr3R_12100608_12100675;chr3R_12100604_12100675 chr3R_12100598_12100675 chr3R_12100676_12100891;chr3R_12100535_12100597 19.05 NA NA 24.00 NA NA 19.05 20.83 14.29 13.64 NA 16.13 NA NA NA NA NA NA NA 31.25 NA NA NA NA NA NA NA NA NA 16.13 25.93 NA 20.00 23.81 NA NA NA NA NA 20.93 NA 30.00 NA 12.50 NA 14.81 NA 22.50 14.29 NA NA 15.00 NA NA NA NA NA 17.14 K intron_retention I_chr3R_20745983_20746038,CG11120 chr3R + chr3R_20748310_20748373 chr3R_20748309_20748310;chr3R_20748373_20748374 chr3R_20748189_20748309;chr3R_20748374_20749945 0.00 0.00 0.00 3.33 0.00 NA 0.00 3.45 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 29.41 NA NA 0.00 20.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 5.88 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA K jcn_only_AD CG13689 chr2L + chr2L_602950_603073 chr2L_603007_603073 chr2L_603074_603562;chr2L_602813_602949 100.00 NA NA 100.00 NA NA 95.45 96.43 96.00 NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA NA 95.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 92.59 100.00 90.48 NA NA NA NA 100.00 NA 100.00 93.02 K jcn_only_AA mRNA-capping-enzyme,I_chrX_14135349_14135413 chrX - chrX_14135349_14135413 chrX_14135352_14135413 chrX_14135414_14135513;chrX_14135249_14135348 99.69 99.51 100.00 99.54 99.23 100.00 100.00 99.53 99.69 100.00 99.29 100.00 99.20 100.00 100.00 99.39 100.00 100.00 100.00 100.00 100.00 99.50 100.00 100.00 99.47 99.31 99.56 95.89 100.00 99.55 99.29 98.90 99.58 100.00 100.00 99.59 99.62 100.00 100.00 99.67 98.98 99.68 100.00 100.00 99.67 100.00 100.00 99.45 99.63 99.52 100.00 100.00 98.81 100.00 100.00 100.00 99.65 99.45 K jcn_only_AD Psn,RI_chr3L_20430213_20430358 chr3L + chr3L_20427403_20427647;chr3L_20427445_20427647 chr3L_20427346_20427647 chr3L_20427648_20427812;chr3L_20427187_20427345 7.30 7.32 9.48 10.21 6.67 12.09 4.13 6.87 6.31 12.12 6.41 5.52 7.52 6.58 8.60 1.88 7.97 2.10 4.17 8.99 3.45 4.78 10.47 9.50 13.01 6.35 7.97 7.34 2.47 4.88 7.28 8.22 6.45 8.40 6.76 4.35 6.08 10.41 7.89 17.14 6.88 8.31 7.09 6.83 10.22 10.08 9.80 9.17 5.68 5.69 9.49 7.30 5.85 6.15 5.38 8.88 9.12 7.32 K jcn_only_AD I_chr2L_8029734_8029787,Cka,CG7429 chr2L + chr2L_8030840_8032059;chr2L_8031338_8032059;chr2L_8031163_8032059;chr2L_8031309_8032059 chr2L_8031036_8032059 chr2L_8032060_8032641;chr2L_8030749_8030839 0.64 3.77 1.74 0.00 0.00 0.00 0.00 0.00 0.64 0.83 0.00 0.50 0.00 1.02 0.91 1.10 0.94 1.08 0.89 0.47 0.76 0.69 0.72 1.27 0.97 0.95 0.69 0.84 3.88 0.65 0.00 4.00 2.30 0.70 0.00 0.00 0.75 0.00 0.00 0.51 4.26 0.55 0.00 0.00 0.00 0.00 0.60 1.96 0.00 0.00 0.58 0.00 0.00 2.75 0.00 1.59 1.69 0.00 K alternative_donor larp,F_chr3R_24151542_24153876,I_chr3R_24160430_24160932,I_chr3R_24160430_24160971,RI_chr3R_24160430_24161527 chr3R - chr3R_24160430_24161729;chr3R_24160430_24160932;chr3R_24160430_24160975;chr3R_24160430_24160979;chr3R_24160430_24161939;chr3R_24160430_24161527 chr3R_24160430_24160971 chr3R_24160330_24160429;chr3R_24161940_24162125 1.71 1.28 1.09 2.76 1.67 0.00 0.65 1.74 2.30 1.39 3.28 1.14 1.32 1.12 1.14 1.99 1.28 1.19 1.09 1.88 1.47 3.96 2.63 2.02 1.75 0.00 2.06 1.71 5.33 0.00 2.08 3.45 1.32 0.62 1.52 2.63 1.05 4.35 5.00 3.88 1.92 1.65 1.56 2.74 0.00 5.00 0.00 6.61 1.90 0.00 0.98 1.33 1.67 3.03 1.92 2.17 4.26 3.09 K intron_retention mnb chrX - chrX_17762403_17763014 chrX_17762402_17762403;chrX_17763014_17763015 chrX_17762340_17762402;chrX_17763015_17763849 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Fdxh chr3L - chr3L_9363917_9364003 chr3L_9363916_9363917;chr3L_9364003_9364004 chr3L_9363865_9363916;chr3L_9364004_9364282 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 4.17 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K alternative_donor sax,CG1882 chr2R + chr2R_3700498_3700785;chr2R_3700238_3700785 chr2R_3700197_3700785 chr2R_3700786_3702250;chr2R_3700011_3700196 8.47 10.14 7.94 7.95 6.52 16.07 7.52 6.45 10.71 6.94 2.17 6.84 12.82 8.51 13.24 12.50 8.11 13.73 12.28 11.26 7.14 22.16 7.19 12.30 10.48 8.47 12.42 4.60 7.55 6.32 15.84 7.14 6.78 3.85 11.39 7.62 8.06 11.83 10.49 6.43 13.40 10.71 7.32 6.21 10.58 12.30 6.06 7.48 12.84 9.00 10.71 11.27 5.66 10.67 7.69 8.33 9.38 7.59 K intron_retention CG18659,E_chr2R_5011363_5019110,I_chr2R_5016147_5016997 chr2R - chr2R_5018864_5018987 chr2R_5018863_5018864;chr2R_5018987_5018988 chr2R_5018669_5018863;chr2R_5018988_5019370 8.51 8.47 6.67 25.37 8.51 6.52 7.81 2.90 7.34 11.76 7.32 9.64 0.00 0.00 5.77 0.00 0.00 0.00 6.67 6.60 9.09 54.39 9.68 10.13 16.36 7.84 10.00 16.22 39.47 14.10 9.38 6.25 12.00 6.58 10.94 15.07 10.53 14.04 12.05 8.93 12.24 8.49 5.00 10.91 13.33 7.02 12.07 20.29 3.30 14.89 9.09 4.44 4.88 12.50 5.45 6.52 2.38 2.63 K intron_retention CG3493 chr2R - chr2R_19259700_19259765 chr2R_19259699_19259700;chr2R_19259765_19259766 chr2R_19259628_19259699;chr2R_19259766_19263476 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 1.09 0.00 0.00 1.41 2.56 0.00 0.00 0.00 0.00 0.00 1.37 2.47 0.00 0.00 0.00 2.15 6.45 4.65 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 K intron_retention noncoding_22436,RpS6,E_chrX_7795041_7795273,snoRNA:Or-aca2 chrX - chrX_7795041_7795275 chrX_7795040_7795041;chrX_7795275_7795276 chrX_7794941_7795040;chrX_7795276_7795335 0.00 0.00 0.03 0.12 0.03 0.00 0.45 0.00 0.00 0.00 0.00 0.03 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.08 0.28 0.08 0.16 0.11 0.41 0.00 0.03 0.00 0.00 0.00 0.00 0.11 0.07 0.00 0.00 0.00 0.22 0.01 0.00 0.04 0.00 0.00 0.00 0.00 0.01 0.07 0.00 0.00 0.05 0.00 0.01 0.03 0.00 0.00 K jcn_only_AD CG4433,I_chr3R_15845478_15846094 chr3R - chr3R_15845478_15846069;chr3R_15845478_15846006 chr3R_15845478_15846094 chr3R_15845378_15845477;chr3R_15846095_15846194 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.98 0.00 0.00 1.46 1.11 0.00 0.00 0.00 1.56 1.92 0.00 0.00 0.00 0.00 0.00 1.18 0.73 0.00 0.00 0.76 0.00 0.86 0.00 0.00 1.04 0.33 0.49 0.77 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.92 0.91 0.00 0.00 0.00 0.71 0.00 K intron_retention CG7766,I_chrX_8993495_8994545,I_chrX_8991338_8991387 chrX - chrX_8992447_8994545 chrX_8992446_8992447;chrX_8994545_8994546 chrX_8992117_8992446;chrX_8994546_8994553 43.33 41.67 66.67 NA 38.46 56.25 54.55 55.56 43.33 NA NA 45.45 NA NA NA 60.00 57.14 43.75 47.83 53.57 NA 66.67 18.52 29.17 33.33 72.73 23.53 NA 22.73 60.00 64.29 NA NA 58.82 NA NA 30.43 17.65 NA 65.00 NA 48.00 NA 19.35 21.43 20.00 NA 36.36 47.06 36.36 29.17 15.38 11.76 NA 60.00 28.57 16.67 NA K intron_retention Mdh,grass chr3R + chr3R_22984924_22984986 chr3R_22984923_22984924;chr3R_22984986_22984987 chr3R_22984730_22984923;chr3R_22984987_22985505 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.25 0.00 0.66 0.23 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.47 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.99 0.55 0.00 0.46 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.27 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.40 0.00 0.78 0.00 0.29 0.00 0.00 0.40 0.00 0.00 K jcn_only_AA aux chr3R + chr3R_47040_47501 chr3R_47040_47477 chr3R_46840_47039;chr3R_47502_47708 100.00 100.00 99.26 100.00 100.00 100.00 99.20 97.69 100.00 100.00 100.00 99.01 100.00 98.84 100.00 100.00 100.00 100.00 100.00 99.67 100.00 100.00 100.00 98.00 100.00 98.99 98.40 98.15 99.24 99.44 98.37 98.35 100.00 100.00 98.39 100.00 100.00 99.37 98.29 100.00 99.34 99.46 100.00 100.00 100.00 100.00 100.00 98.71 99.15 100.00 100.00 100.00 99.15 100.00 100.00 100.00 98.80 99.62 K jcn_only_AA Ptp99A,I_chr3R_25302126_25302175 chr3R + chr3R_25302126_25307191 chr3R_25302126_25307188 chr3R_25302026_25302125;chr3R_25307192_25307198 90.91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_acceptor CG8080,I_chr2R_4979276_4979936,CG13741 chr2R - chr2R_4979276_4979936;chr2R_4979159_4979936 chr2R_4979377_4979936 chr2R_4979937_4980036;chr2R_4979059_4979158 3.34 4.35 6.67 0.00 0.00 0.00 42.86 2.38 6.38 0.00 9.09 6.67 15.79 8.33 0.00 5.56 0.00 6.25 0.00 5.88 0.00 33.33 8.33 0.00 7.14 8.33 5.88 NA NA 6.67 0.00 NA 0.00 3.45 0.00 NA 3.57 0.00 0.00 3.23 9.09 2.63 0.00 0.00 NA 0.00 6.67 5.88 2.27 0.00 3.45 0.00 0.00 0.00 6.25 5.00 3.70 0.00 K intron_retention mew,I_chrX_13133259_13150649 chrX - chrX_13111234_13111300 chrX_13111233_13111234;chrX_13111300_13111301 chrX_13111094_13111233;chrX_13111301_13112697 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Amun,I_chrX_11607839_11608272,I_chrX_11607842_11608105,I_chrX_11607842_11608125,RI_chrX_11607842_11608272 chrX - chrX_11607718_11607787;chrX_11607631_11607787 chrX_11607722_11607787 chrX_11607788_11607838;chrX_11606802_11607630 100.00 97.30 97.44 98.00 100.00 100.00 100.00 100.00 97.59 95.83 100.00 100.00 96.43 96.88 100.00 97.78 100.00 100.00 97.06 97.62 100.00 100.00 98.08 97.73 97.14 96.77 97.78 100.00 97.50 100.00 100.00 100.00 100.00 100.00 96.77 97.67 97.87 100.00 100.00 97.50 96.77 98.53 100.00 97.67 100.00 100.00 100.00 97.56 100.00 96.88 100.00 96.43 100.00 97.14 100.00 100.00 100.00 100.00 K alternative_donor e(y)3,I_chrX_19530503_19530884,I_chrX_19530503_19531405 chrX - chrX_19530503_19530884;chrX_19530503_19531405;chrX_19530503_19532222 chrX_19530503_19531650 chrX_19530403_19530502;chrX_19532223_19532322 80.77 84.48 85.71 80.77 76.47 84.48 84.62 77.89 81.53 73.44 81.58 79.53 84.91 85.71 82.26 85.37 77.55 82.35 85.71 79.84 90.24 82.22 81.08 81.82 72.88 78.00 81.33 65.00 64.29 73.53 81.36 85.71 70.48 76.29 73.85 79.75 84.62 87.65 80.87 72.55 68.42 77.69 67.39 88.16 71.43 61.70 72.50 67.89 77.88 88.64 78.31 85.96 80.00 84.00 74.63 81.82 87.50 69.23 K cassette PyK,CG7069,CG18596,I_chr3R_18203637_18203690,I_chr3R_18209085_18209133 chr3R + chr3R_18193391_18196499 chr3R_18193391_18194506;chr3R_18194588_18196499 chr3R_18194507_18194587 chr3R_18193322_18193390;chr3R_18196500_18197889 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.08 0.22 0.00 0.49 0.00 0.19 0.00 0.22 0.00 0.00 0.00 0.00 0.29 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.27 0.00 0.00 K jcn_only_AA Eb1,I_chr2R_2640494_2642206,I_chr2R_2642491_2642549 chr2R + chr2R_2636895_2640136 chr2R_2636895_2640115 chr2R_2636790_2636894;chr2R_2640137_2640289 0.15 0.00 0.29 0.37 0.00 0.00 0.00 0.38 0.18 0.00 0.00 0.00 1.29 0.00 0.00 0.79 0.57 0.00 0.37 0.10 0.00 0.00 0.19 0.34 0.74 0.00 0.21 0.28 0.43 0.20 0.22 0.25 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.22 0.00 0.00 0.32 0.67 0.00 0.25 0.31 0.00 0.32 0.21 0.00 0.42 0.00 0.27 0.00 0.64 0.00 K intron_retention pAbp,I_chr2R_14027838_14028996,snoRNA:Psi18S-1347a,snoRNA:Psi18S-1347b,snoRNA:Psi18S-1347c chr2R + chr2R_14029178_14030917 chr2R_14029177_14029178;chr2R_14030917_14030918 chr2R_14028997_14029177;chr2R_14030918_14032402 0.00 0.00 0.06 0.08 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.07 0.00 0.00 0.00 K jcn_only_AA casp,EI_chr2R_11914764_11914841 chr2R - chr2R_11914784_11914841;chr2R_11914764_11914841 chr2R_11914769_11914841 chr2R_11914842_11914941;chr2R_11914664_11914763 18.18 14.75 26.14 21.57 11.29 12.50 27.45 24.04 16.53 22.41 31.25 19.30 15.52 13.51 14.47 17.02 23.33 14.47 11.67 16.67 12.96 13.14 25.96 22.06 22.22 20.59 13.58 6.67 30.14 22.89 13.79 18.18 10.98 21.59 18.64 19.35 19.74 22.97 14.93 18.00 25.00 15.17 17.02 20.83 8.47 14.29 15.87 21.88 21.19 12.12 20.69 21.82 20.59 20.93 17.05 17.24 19.05 16.81 K intron_retention CG5664,RI_chr3L_21432841_21432888 chr3L - chr3L_21432832_21432888 chr3L_21432831_21432832;chr3L_21432888_21432889 chr3L_21432741_21432831;chr3L_21432889_21432988 3.33 NA NA 12.50 NA NA 8.33 0.00 14.29 NA 0.00 11.11 NA NA NA 5.88 NA NA 0.00 3.33 NA 5.00 4.76 5.56 NA NA 15.38 12.50 NA NA 0.00 NA 0.00 5.56 NA 6.67 0.00 0.00 10.53 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 13.04 0.00 0.00 NA NA NA 15.00 0.00 0.00 NA K jcn_only_AD CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907848_9908531 chr2L_9907848_9908424 chr2L_9907756_9907847;chr2L_9908532_9908619 95.00 NA NA NA NA NA NA NA 95.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG18766,RI_chr3R_23069096_23069168,I_chr3R_23069667_23070365 chr3R - chr3R_23069098_23069168 chr3R_23069097_23069098;chr3R_23069168_23069169 chr3R_23068975_23069097;chr3R_23069169_23069268 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083588_8089393 chr2L_8083588_8089184 chr2L_8083530_8083587;chr2L_8089394_8089493 100.00 100.00 100.00 81.25 NA 75.00 89.74 96.67 100.00 100.00 100.00 92.00 94.74 93.33 75.00 95.83 92.86 100.00 93.33 100.00 NA 91.67 100.00 100.00 100.00 92.31 90.00 100.00 88.89 100.00 88.89 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 76.92 100.00 80.00 90.91 83.33 87.50 100.00 100.00 91.67 100.00 NA NA 100.00 80.00 100.00 100.00 K jcn_only_AD Hcf,I_chr4_390281_391716,I_chr4_391783_391844,I_chr4_391787_391885,I_chr4_391984_392875 chr4 + chr4_390281_391716;chr4_390591_391716 chr4_387389_391716 chr4_391717_391782 15.87 17.86 10.45 38.46 26.67 25.00 19.17 10.56 18.84 10.26 13.89 29.55 21.21 16.13 20.29 20.00 15.87 24.56 19.80 21.57 4.17 12.50 13.56 14.29 11.90 26.09 19.61 25.00 23.08 16.67 17.86 12.24 9.09 20.00 7.89 20.93 19.35 11.63 19.40 11.93 14.00 14.09 10.29 5.13 28.57 11.29 6.25 10.34 14.19 8.70 10.20 17.50 29.27 6.90 9.26 19.57 13.04 12.17 K alternative_acceptor simj,I_chr3L_10680263_10680313 chr3L + chr3L_10681698_10681790 chr3L_10681698_10681778 chr3L_10680765_10681697;chr3L_10681791_10681880 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention RpL7,E_chr2L_10201368_10201776 chr2L + chr2L_10201529_10201598 chr2L_10201528_10201529;chr2L_10201598_10201599 chr2L_10201230_10201528;chr2L_10201599_10202262 0.04 0.01 0.04 0.03 0.05 0.02 0.00 0.06 0.05 0.03 0.00 0.05 0.02 0.08 0.05 0.00 0.00 0.00 0.04 0.05 0.05 0.11 0.04 0.05 0.04 0.00 0.20 0.31 0.16 0.00 0.07 0.00 0.07 0.04 0.00 0.02 0.01 0.05 0.04 0.02 0.02 0.04 0.03 0.02 0.05 0.05 0.03 0.06 0.11 0.10 0.03 0.03 0.05 0.02 0.04 0.05 0.09 0.11 K alternative_acceptor CG31720,F_chr2L_10234951_10235484 chr2L - chr2L_10236257_10236374;chr2L_10236287_10236374 chr2L_10236292_10236374 chr2L_10236375_10236547;chr2L_10236031_10236256 18.18 NA NA NA NA NA NA 20.00 10.00 NA NA 14.29 NA NA NA NA NA NA 14.29 25.00 NA 0.00 28.57 NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA 28.57 NA 42.86 NA NA NA NA NA NA 18.18 18.18 NA NA NA NA NA NA NA NA K cassette CG1161 chr3R + chr3R_1181851_1182146 chr3R_1181851_1181899;chr3R_1181959_1182146 chr3R_1181900_1181958 chr3R_1181725_1181850;chr3R_1182147_1182246 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Arpc3B,noncoding_24328 chrX - chrX_16999020_16999515 chrX_16999019_16999020;chrX_16999515_16999516 chrX_16998601_16999019;chrX_16999516_16999689 2.45 1.54 4.88 18.99 0.00 1.11 5.06 3.93 2.87 0.00 6.59 2.27 5.61 3.70 2.14 2.16 2.22 2.29 4.27 2.45 3.00 2.11 3.64 2.40 5.26 5.83 8.06 11.54 8.06 1.09 1.34 0.00 0.00 3.36 2.56 8.64 3.12 1.69 1.70 2.99 3.23 3.10 2.38 6.06 3.01 1.90 0.70 1.77 2.71 2.54 1.47 2.86 0.00 0.00 0.00 0.60 1.30 0.00 K cassette CG8788,RI_chr2R_5026311_5026442,I_chr2R_5026774_5026825,RI_chr2R_5026774_5026866,RI_chr2R_5026774_5028942,RI_chr2R_5033951_5034150,I_chr2R_5036518_5036570 chr2R + chr2R_5026076_5027484 chr2R_5026076_5026442;chr2R_5026774_5027484 chr2R_5026443_5026773 chr2R_5026036_5026075;chr2R_5027485_5027803 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA N alternative_donor CG17255,I_chrX_10366177_10366615,RI_chrX_10366177_10367270 chrX - chrX_10366177_10367360;chrX_10366177_10367458;chrX_10366177_10367270;chrX_10366177_10368085;chrX_10366177_10366615 chrX_10366177_10367201 chrX_10366077_10366176;chrX_10368086_10368118 6.94 7.69 6.49 9.40 7.69 7.81 7.45 14.88 8.57 6.56 8.47 7.28 11.11 7.06 5.05 12.75 9.46 4.92 7.07 10.48 7.41 4.92 8.00 4.71 8.89 6.59 2.74 6.78 2.94 2.38 8.24 3.39 4.32 9.84 8.82 7.81 6.76 7.14 7.94 6.25 4.41 6.71 10.61 6.94 3.64 4.82 6.25 5.00 6.43 4.44 6.10 10.53 2.94 0.00 7.48 5.56 9.09 3.42 K alternative_acceptor Rlip,RI_chr3R_16843597_16843851,I_chr3R_16845111_16845166 chr3R + chr3R_16843797_16843854 chr3R_16843797_16843851 chr3R_16843664_16843796;chr3R_16843855_16843951 100.00 NA NA 100.00 NA NA NA 90.00 100.00 NA NA 91.67 NA NA 87.50 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 90.91 100.00 81.82 100.00 NA NA NA NA NA 90.00 100.00 100.00 NA NA NA 100.00 100.00 100.00 91.67 NA NA NA NA NA NA NA NA 90.91 K jcn_only_AA CG9674,I_chr3L_16785451_16785540,I_chr3L_16785706_16785748,I_chr3L_16793055_16800660 chr3L - chr3L_16785451_16785540;chr3L_16784791_16785540 chr3L_16785436_16785540 chr3L_16785541_16785640 6.91 7.50 1.77 3.78 3.27 7.11 8.41 3.38 5.34 10.21 5.41 7.01 6.29 6.97 6.69 3.55 5.43 12.32 5.00 3.09 5.74 19.94 3.94 8.88 9.27 7.82 7.75 11.25 12.76 8.36 12.54 6.41 8.76 5.48 6.49 3.14 3.84 7.50 5.28 8.44 6.94 7.12 6.91 12.14 4.86 9.50 4.17 9.35 6.22 4.68 8.93 8.47 10.29 4.17 6.91 7.25 2.90 6.83 K intron_retention CG17883,I_chr2R_560147_560511,I_chr2R_560547_560618 chr2R + chr2R_560147_560618 chr2R_560146_560147;chr2R_560618_560619 chr2R_560047_560146;chr2R_560619_560642 88.89 90.32 85.19 83.33 89.47 88.46 98.48 97.01 87.64 69.23 85.19 86.54 93.33 96.77 87.50 95.08 85.00 88.89 89.36 93.65 90.00 94.12 87.10 89.66 85.00 78.57 80.00 90.00 90.00 90.48 81.82 95.00 90.00 87.67 86.36 100.00 87.50 100.00 84.00 96.67 87.50 90.48 87.88 88.00 91.67 91.67 89.29 86.67 86.57 76.67 93.75 83.33 96.00 88.46 87.50 90.00 88.89 84.00 K intron_retention tefu,I_chr3R_11060517_11060585 chr3R - chr3R_11067607_11067664 chr3R_11067606_11067607;chr3R_11067664_11067665 chr3R_11067498_11067606;chr3R_11067665_11067839 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.94 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA 9.52 NA NA 0.00 NA 0.00 13.33 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 3.70 NA NA NA K intron_retention noncoding_11709,UbcD4 chr3L + chr3L_9691856_9692065 chr3L_9691855_9691856;chr3L_9692065_9692066 chr3L_9691410_9691855;chr3L_9692066_9692218 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 1.16 0.00 0.00 0.00 0.74 1.80 0.00 0.68 0.00 0.00 0.63 0.86 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.34 1.54 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.55 K intron_retention phol,CG3437,CG3434 chr3L - chr3L_9448743_9448837 chr3L_9448742_9448743;chr3L_9448837_9448838 chr3L_9445942_9448742;chr3L_9448838_9449373 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 3.45 2.67 0.00 4.65 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 2.78 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 3.03 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CkIalpha,I_chrX_12548371_12549203,I_chrX_12548704_12549203,I_chrX_12548772_12549203 chrX + chrX_12548202_12549203 chrX_12548201_12548202;chrX_12549203_12549204 chrX_12548133_12548201;chrX_12549204_12549210 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 8.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor capu,I_chr2L_3884519_3902594,I_chr2L_3887800_3888648,I_chr2L_3887896_3888648 chr2L - chr2L_3887557_3888648 chr2L_3887800_3888648 chr2L_3888649_3888710;chr2L_3886984_3887556 30.00 20.00 25.00 31.25 NA NA 7.14 27.78 23.33 NA NA 35.00 7.14 30.00 36.36 26.32 30.00 36.36 15.00 42.11 20.00 64.71 27.78 40.00 NA 26.67 21.43 30.00 33.33 30.77 36.36 NA 31.25 22.73 57.14 80.95 35.71 30.00 36.36 35.00 42.86 23.81 NA 17.65 50.00 15.79 37.50 29.17 16.67 NA 20.00 25.00 NA NA 22.22 NA NA 50.00 K intron_retention CkIIalpha,RI_chr3L_23094196_23095221 chr3L + chr3L_23093458_23095221 chr3L_23093457_23093458;chr3L_23095221_23095222 chr3L_23093381_23093457;chr3L_23095222_23095321 0.00 0.00 0.00 0.00 5.26 0.00 5.88 0.00 2.60 NA 0.00 5.26 11.11 0.00 0.00 2.78 3.23 0.00 0.00 7.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.52 0.00 0.00 0.00 0.00 4.76 1.89 0.00 4.17 0.00 0.00 0.00 0.00 8.70 0.00 2.38 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 3.03 K intron_retention Mpcp chr3L + chr3L_14531522_14531828 chr3L_14531521_14531522;chr3L_14531828_14531829 chr3L_14531104_14531521;chr3L_14531829_14532169 0.00 0.00 0.18 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.13 0.13 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.08 0.34 0.14 0.17 0.00 0.00 0.00 0.12 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG31716,I_chr2L_10397648_10398034 chr2L + chr2L_10399689_10399767;chr2L_10399713_10399767 chr2L_10399677_10399767 chr2L_10399768_10400679;chr2L_10399595_10399676 27.03 26.00 19.64 28.30 31.48 28.26 20.90 19.78 24.63 21.88 29.09 30.10 17.54 22.45 39.44 29.21 19.15 20.00 20.00 25.00 28.57 20.00 27.14 26.56 23.68 17.65 31.03 30.43 17.50 24.00 30.26 26.47 44.93 29.89 27.03 43.48 25.68 36.96 32.86 31.40 33.33 28.81 25.53 25.00 25.53 29.31 50.00 27.27 27.52 25.53 26.87 33.33 28.12 27.59 24.14 28.89 15.56 24.49 K jcn_only_AA CG32809,RI_chrX_1585164_1585239,RI_chrX_1585391_1586471,I_chrX_1589508_1589564 chrX - chrX_1585164_1585239 chrX_1585167_1585239 chrX_1585240_1585339;chrX_1585122_1585163 81.82 NA NA NA NA NA NA NA 84.00 NA NA NA NA NA NA NA NA NA NA NA NA 77.78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 81.82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_acceptor PNGase,I_chr2R_1906759_1906817,I_chr2R_1906899_1906977 chr2R + chr2R_1907055_1907113 chr2R_1907055_1907110 chr2R_1906978_1907054;chr2R_1907114_1907168 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.01 93.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3295244;chr2R_3294566_3294634;chr2R_3294566_3294636;chr2R_3294566_3294638;chr2R_3294566_3295280;chr2R_3294566_3294642;chr2R_3294566_3294714 chr2R_3294566_3295176 chr2R_3294491_3294565;chr2R_3295281_3295302 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 4.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 K alternative_acceptor RanBPM chr2R + chr2R_6322096_6322141;chr2R_6322096_6322150 chr2R_6322096_6322156 chr2R_6321932_6322095;chr2R_6322157_6322290 47.62 49.15 45.83 53.95 45.16 50.00 51.95 40.62 46.91 50.00 54.55 48.81 47.62 39.02 53.57 50.00 43.33 37.84 53.85 53.85 47.62 42.86 46.75 48.15 46.51 46.67 38.57 43.75 45.16 50.00 49.25 52.94 42.11 49.25 37.78 37.25 48.28 48.00 49.25 41.67 48.28 46.24 57.14 48.39 44.23 45.65 44.59 45.83 51.14 40.00 49.21 38.46 54.00 49.28 59.02 45.45 48.39 47.37 K alternative_donor CG7484,RI_chr3L_17647825_17647881,RI_chr3L_17647827_17648317 chr3L + chr3L_17647825_17647881 chr3L_17647827_17647881 chr3L_17647882_17647981;chr3L_17647729_17647824 100.00 100.00 96.15 100.00 96.77 100.00 100.00 100.00 98.94 93.75 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 96.67 95.83 100.00 96.72 97.56 100.00 96.67 98.36 100.00 95.83 100.00 100.00 100.00 100.00 92.50 95.45 100.00 97.14 96.88 97.92 97.56 100.00 98.36 95.83 100.00 93.75 97.50 97.37 100.00 100.00 100.00 98.39 97.06 100.00 100.00 100.00 98.21 99.12 95.00 K intron_retention MED31,CG18271,I_chr3R_468381_468483,CE_chr3R_468381_468504 chr3R + chr3R_468381_468472 chr3R_468380_468381;chr3R_468472_468473 chr3R_468291_468380;chr3R_468473_469014 5.80 7.35 2.78 5.68 11.36 10.71 7.14 9.71 5.80 0.00 2.50 3.54 4.84 4.23 5.41 3.75 8.00 9.62 6.67 8.70 5.00 6.52 7.76 3.53 7.41 8.20 13.79 14.52 12.33 3.23 10.61 2.70 7.07 7.14 5.88 7.35 6.94 3.80 1.94 5.97 5.56 6.90 8.89 4.35 4.46 6.15 4.04 2.70 8.93 3.28 3.81 5.36 7.81 5.33 3.85 3.96 5.04 3.53 K alternative_acceptor CG7158 chr3L - chr3L_21668049_21668121;chr3L_21668076_21668121 chr3L_21668063_21668121 chr3L_21668122_21668273;chr3L_21667494_21668048 100.00 94.74 93.33 94.44 100.00 100.00 100.00 94.44 96.55 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 95.83 100.00 94.74 93.75 95.65 91.67 84.21 91.67 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 91.67 100.00 100.00 95.00 100.00 100.00 96.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 K intron_retention CG11006,F_chr3L_12799159_12799339 chr3L + chr3L_12805717_12805779 chr3L_12805716_12805717;chr3L_12805779_12805780 chr3L_12805609_12805716;chr3L_12805780_12806136 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 2.78 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Gprk1,R_chr2R_238724_265876,RI_chr2R_357455_358274 chr2R - chr2R_210221_210280 chr2R_210220_210221;chr2R_210280_210281 chr2R_210047_210220;chr2R_210281_210443 0.00 NA NA 0.00 NA 0.00 5.26 0.00 0.00 NA NA 0.00 17.65 0.00 NA 7.14 NA NA 4.17 0.00 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 5.26 NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 4.76 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 K intron_retention Syx4,I_chrX_2636831_2636971 chrX - chrX_2636831_2637483 chrX_2636830_2636831;chrX_2637483_2637484 chrX_2636731_2636830;chrX_2637484_2637679 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 1.72 NA 0.00 0.00 0.00 0.00 4.08 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CtBP chr3R + chr3R_8844599_8845063 chr3R_8844598_8844599;chr3R_8845063_8845064 chr3R_8844512_8844598;chr3R_8845064_8845536 73.68 82.35 86.67 76.92 68.75 82.61 85.00 84.00 64.71 NA 76.47 80.56 76.47 83.33 65.38 77.42 73.68 55.56 73.08 82.05 69.23 80.95 66.67 73.33 69.23 66.67 88.24 81.82 80.00 63.64 80.95 NA 81.25 58.06 60.00 94.44 72.73 NA 83.33 75.00 63.64 73.68 76.47 60.00 NA 50.00 NA 78.57 71.79 66.67 58.82 60.00 NA NA 78.95 NA 70.00 58.33 K intron_retention CG9240,Pis chrX - chrX_15596219_15596296 chrX_15596218_15596219;chrX_15596296_15596297 chrX_15595478_15596218;chrX_15596297_15596448 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA CG8108,EI_chr3L_9859462_9859590,chr3L_9859594_9859878.0 chr3L + chr3L_9859462_9860413;chr3L_9859462_9859590 chr3L_9859462_9860377 chr3L_9859414_9859461;chr3L_9860414_9860844 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.53 0.00 0.00 0.00 0.00 15.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4078,I_chrX_5645012_5645067,F_chrX_5650884_5651894 chrX + chrX_5644434_5644494 chrX_5644433_5644434;chrX_5644494_5644495 chrX_5643770_5644433;chrX_5644495_5644637 0.00 0.00 0.00 13.33 0.00 0.00 0.00 0.00 2.70 NA NA 3.45 0.00 NA 0.00 3.85 NA 0.00 0.00 2.50 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ac78C,F_chr3L_21141024_21153737 chr3L - chr3L_21133348_21133409 chr3L_21133347_21133348;chr3L_21133409_21133410 chr3L_21133252_21133347;chr3L_21133410_21133955 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K cassette shi,RI_chrX_15786633_15786860,RE_chrX_15793108_15795563 chrX + chrX_15793108_15795576 chrX_15793108_15793476;chrX_15793489_15795576 chrX_15793477_15793488 chrX_15793008_15793107;chrX_15795577_15795663 8.47 9.80 9.86 29.17 3.23 4.41 3.37 10.00 7.81 5.00 5.45 6.98 4.69 9.43 7.35 11.43 10.87 6.35 7.46 13.51 14.29 14.58 7.37 6.45 7.69 12.50 9.43 6.25 6.38 9.80 8.47 7.69 18.33 8.60 14.55 9.68 4.35 6.12 11.48 2.86 11.54 7.14 7.02 11.11 7.55 6.12 10.00 12.07 9.28 11.63 10.14 14.29 3.03 5.41 4.94 6.12 10.64 8.89 N cassette CG6643,I_chr3R_20370792_20375406 chr3R + chr3R_20380127_20380423 chr3R_20380127_20380186;chr3R_20380364_20380423 chr3R_20380187_20380363 chr3R_20380078_20380126;chr3R_20380424_20380855 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention cerv,RI_chrX_15471783_15471843 chrX - chrX_15471799_15471843 chrX_15471798_15471799;chrX_15471843_15471844 chrX_15471018_15471798;chrX_15471844_15471943 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA 5.26 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor Xe7,RI_chr3R_1491850_1491919,CRI_chr3R_1493111_1493414 chr3R - chr3R_1491850_1491919 chr3R_1491868_1491919 chr3R_1491920_1491944;chr3R_1491790_1491849 91.67 88.89 89.47 92.86 100.00 94.44 88.89 95.83 88.57 93.75 88.24 88.89 95.00 85.71 91.30 93.33 93.75 91.67 95.24 84.85 81.25 87.80 97.22 94.12 94.12 91.67 95.83 94.12 87.50 87.50 96.55 88.89 84.78 88.24 80.00 83.33 93.94 95.65 88.57 91.84 89.13 88.57 92.31 85.19 92.86 88.00 90.00 95.74 97.14 93.10 84.62 95.24 96.00 80.95 94.12 91.43 92.11 87.72 K intron_retention dgt6 chr3R - chr3R_24955190_24955250 chr3R_24955189_24955190;chr3R_24955250_24955251 chr3R_24954669_24955189;chr3R_24955251_24955685 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3589 chr2R + chr2R_20671885_20671939 chr2R_20671884_20671885;chr2R_20671939_20671940 chr2R_20671100_20671884;chr2R_20671940_20672103 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 2.56 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.92 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG14023 chr2L - chr2L_5324907_5325951 chr2L_5324910_5325951 chr2L_5325952_5326648;chr2L_5324726_5324906 89.87 95.83 86.21 97.30 82.61 80.00 88.89 87.23 87.32 NA NA 89.74 90.91 96.55 90.00 79.59 92.31 90.00 76.67 82.26 NA NA 94.34 88.46 95.24 92.31 95.00 95.65 NA 92.31 NA NA 85.00 90.57 95.24 95.00 93.94 86.36 86.96 88.89 NA 88.33 80.95 NA NA NA NA 86.67 86.57 NA 97.14 NA NA NA 91.18 NA NA NA K intron_retention CG2225 chr2L - chr2L_21665596_21665917 chr2L_21665595_21665596;chr2L_21665917_21665918 chr2L_21665567_21665595;chr2L_21665918_21666003 0.00 7.69 0.00 0.00 NA NA 9.09 7.14 0.00 NA NA 0.00 NA 0.00 0.00 7.14 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 12.50 0.00 NA NA NA 0.00 NA NA 8.57 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 7.69 NA 0.00 7.14 NA NA 5.26 NA NA NA N alternative_donor 4EHP,RI_chr3R_19927769_19928262 chr3R - chr3R_19927769_19932546;chr3R_19927769_19929293 chr3R_19927769_19928262 chr3R_19927676_19927768;chr3R_19932547_19933006 8.75 8.45 7.87 10.67 9.59 8.43 14.29 13.66 8.61 9.84 11.69 7.43 8.33 8.64 6.38 18.40 3.95 9.46 9.41 9.29 63.49 8.40 6.56 5.88 10.00 9.33 8.33 11.11 5.95 8.97 9.38 18.92 7.58 9.66 9.09 8.75 4.17 5.71 5.15 7.03 11.32 7.06 8.22 5.49 7.69 8.96 9.84 5.88 9.26 16.28 8.08 6.90 8.93 8.33 6.19 8.89 8.93 8.86 K intron_retention cdc23,RI_chr2L_20460391_20460480 chr2L + chr2L_20461051_20461110 chr2L_20461050_20461051;chr2L_20461110_20461111 chr2L_20460481_20461050;chr2L_20461111_20461599 0.00 0.00 6.25 6.67 0.00 0.00 0.00 0.00 0.00 NA 0.00 4.65 0.00 0.00 5.56 3.45 0.00 0.00 7.14 1.12 0.00 0.00 1.96 0.00 0.00 2.78 5.71 4.08 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 7.69 0.00 0.00 0.00 0.00 1.92 3.33 0.00 4.44 3.64 0.00 0.00 0.00 0.00 6.25 4.44 0.00 0.00 K intron_retention CG3523 chr2L + chr2L_3067116_3067183 chr2L_3067115_3067116;chr2L_3067183_3067184 chr2L_3067020_3067115;chr2L_3067184_3067327 0.40 0.00 0.39 0.54 0.39 0.35 0.49 0.57 0.40 0.33 0.00 0.39 0.54 0.42 0.67 0.67 0.13 0.00 0.25 0.25 0.00 0.59 0.49 0.40 0.19 0.53 2.09 2.48 1.42 0.00 0.25 0.00 0.21 0.37 0.00 0.60 0.46 0.00 0.37 0.74 0.68 0.48 0.00 0.63 0.41 0.73 0.40 0.76 0.41 0.24 0.29 0.50 0.72 0.48 0.22 0.25 0.37 0.71 K intron_retention CG9425,I_chr3L_14783173_14784369 chr3L + chr3L_14791860_14791921 chr3L_14791859_14791860;chr3L_14791921_14791922 chr3L_14791665_14791859;chr3L_14791922_14792466 100.00 100.00 98.57 98.59 100.00 100.00 100.00 98.70 100.00 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.57 98.90 100.00 100.00 100.00 100.00 100.00 99.01 100.00 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Nrx-IV chr3L + chr3L_12144508_12144919 chr3L_12144507_12144508;chr3L_12144919_12144920 chr3L_12144452_12144507;chr3L_12144920_12145116 60.87 58.33 60.00 90.48 53.85 58.33 85.19 66.67 59.09 90.00 60.00 60.00 90.00 52.94 60.00 60.87 50.00 36.36 73.33 55.56 70.00 76.92 65.22 56.25 92.31 93.75 56.00 NA NA 62.50 35.29 NA 69.23 70.83 NA 70.59 65.38 40.91 70.00 65.38 NA 57.69 NA 50.00 NA NA NA 50.00 65.71 NA 65.00 50.00 33.33 NA 62.50 NA NA NA K cassette Tm1,I_chr3R_11120969_11125831,I_chr3R_11121267_11124998,RI_chr3R_11125070_11125831,I_chr3R_11125070_11126469 chr3R + chr3R_11122431_11125831 chr3R_11122431_11124998;chr3R_11125070_11125831 chr3R_11124999_11125069 chr3R_11122313_11122430;chr3R_11125832_11125902 33.33 NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG6597,noncoding_13714 chr3L + chr3L_20295938_20296166;chr3L_20295972_20296166 chr3L_20295603_20296166 chr3L_20296167_20296215;chr3L_20295573_20295602 90.24 77.78 87.50 96.43 100.00 NA 89.66 96.55 95.00 NA 90.00 81.48 100.00 100.00 95.65 100.00 100.00 92.31 100.00 93.75 92.86 82.35 92.31 87.50 81.82 93.33 77.78 NA 81.25 77.78 94.44 88.89 77.78 92.00 87.50 44.44 90.91 NA 70.00 88.89 70.00 91.67 90.48 86.67 94.12 80.00 81.82 87.50 88.24 100.00 90.00 100.00 90.00 NA 94.12 87.50 92.86 96.67 K alternative_donor par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,I_chr2R_15350149_15350210,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350157_15351846;chr2R_15350285_15351846;chr2R_15350437_15351846 chr2R_15350149_15351846 chr2R_15351847_15351914;chr2R_15350068_15350148 10.00 12.50 11.11 25.00 14.29 10.00 0.00 0.00 0.00 25.00 0.00 20.00 20.00 12.50 0.00 6.25 0.00 16.67 14.29 5.56 16.67 0.00 38.46 20.00 33.33 30.00 0.00 0.00 12.50 0.00 11.11 NA 12.50 0.00 0.00 0.00 0.00 0.00 40.00 10.00 NA 9.09 0.00 12.50 NA NA 0.00 12.50 5.00 0.00 10.00 14.29 20.00 NA 9.09 NA 12.50 0.00 K cassette CG15609,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12901502_12903167 chr2R_12901502_12902453;chr2R_12902708_12903167 chr2R_12902454_12902707 chr2R_12901294_12901501;chr2R_12903168_12903182 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.36 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.44 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA smid,I_chr3L_7375166_7375310,I_chr3L_7375435_7375508 chr3L + chr3L_7375832_7375887 chr3L_7375832_7375884 chr3L_7375509_7375831;chr3L_7375888_7375935 76.06 78.12 76.47 83.44 77.61 80.00 75.24 80.30 78.83 66.00 70.83 79.34 76.00 78.95 69.47 72.82 79.69 79.66 73.91 79.87 71.05 67.68 74.39 76.62 65.52 78.79 76.67 84.62 74.19 79.05 87.50 73.17 72.35 84.82 79.76 68.92 73.74 72.60 81.08 72.73 80.52 76.06 79.45 67.68 63.93 71.11 71.15 69.47 82.61 72.58 72.73 77.27 71.88 84.85 76.34 82.93 74.07 67.18 K jcn_only_AD CG3719,E_chrX_1273406_1273479,I_chrX_1273406_1273486,RI_chrX_1273406_1273763 chrX - chrX_1273406_1273763;chrX_1273406_1273486 chrX_1273406_1274170 chrX_1273306_1273405;chrX_1274171_1274773 95.71 95.71 97.78 97.30 97.73 92.11 94.92 98.31 95.19 96.77 100.00 98.80 100.00 97.14 96.30 88.37 95.83 100.00 93.48 94.90 100.00 91.49 98.18 98.41 91.67 95.92 92.86 87.88 88.10 97.96 80.85 86.67 85.00 97.22 88.89 97.78 96.00 94.74 95.29 91.01 94.00 93.46 97.37 97.18 87.32 94.37 89.33 84.75 97.65 100.00 94.44 100.00 97.56 98.21 95.56 93.51 97.62 85.94 K intron_retention Pgk chr2L - chr2L_2747253_2747310 chr2L_2747252_2747253;chr2L_2747310_2747311 chr2L_2746847_2747252;chr2L_2747311_2747398 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Fs(2)Ket,I_chr2L_20734991_20735252,I_chr2L_20735091_20735305,I_chr2L_20735170_20735252,I_chr2L_20738976_20749527 chr2L + chr2L_20735091_20735252 chr2L_20735090_20735091;chr2L_20735252_20735253 chr2L_20735070_20735090;chr2L_20735253_20735352 3.50 2.44 3.70 6.06 0.00 0.00 5.41 3.54 4.08 NA 0.00 5.88 0.00 0.00 3.57 2.70 6.56 4.44 3.57 5.33 5.71 6.25 1.69 0.00 5.88 10.00 7.41 4.76 NA 6.45 3.28 NA 3.45 3.12 4.00 0.00 0.00 0.00 0.00 10.87 NA 2.50 0.00 8.57 NA 0.00 12.50 16.67 3.77 0.00 0.00 3.33 0.00 0.00 0.00 5.88 0.00 7.14 K alternative_donor rin,I_chr3R_9476825_9476895 chr3R + chr3R_9472923_9474639 chr3R_9473269_9474639 chr3R_9474640_9476216;chr3R_9472709_9472922 39.55 43.68 37.86 14.29 28.42 40.21 46.78 47.73 38.66 45.16 31.91 49.12 49.06 41.82 34.78 46.04 36.64 20.45 44.85 43.50 39.71 53.12 40.00 32.50 27.27 37.25 27.27 25.00 29.55 34.52 45.45 44.00 31.94 40.87 42.65 32.43 33.71 27.40 27.78 43.96 48.48 36.89 49.02 39.29 32.43 NA 37.70 50.00 38.21 41.67 42.37 43.10 31.43 39.39 42.22 50.00 33.33 48.39 N alternative_acceptor CG34394,I_chr2L_3365674_3365965,RI_chr2L_3365677_3365965,I_chr2L_3365701_3365757 chr2L - chr2L_3365976_3367244;chr2L_3365674_3367244 chr2L_3365677_3367244 chr2L_3367245_3367719;chr2L_3365601_3365673 53.55 52.38 52.38 58.33 60.00 52.17 54.55 54.05 51.79 55.56 71.43 61.54 55.56 63.16 57.14 51.52 56.52 47.83 50.00 53.06 48.15 48.35 51.52 56.00 45.16 52.94 56.25 50.00 70.59 54.84 47.83 NA 56.52 63.33 51.72 51.72 59.18 65.38 54.90 51.85 NA 46.43 57.14 44.44 63.64 46.15 43.75 38.46 46.88 57.89 47.50 42.11 57.14 66.67 44.00 66.67 60.00 NA K jcn_only_AA myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_716153_716322;chr4_716066_716322;chr4_715964_716322 chr4_715043_716322 chr4_716323_716675 66.67 NA NA 68.75 NA NA 68.00 76.09 58.18 NA NA 59.38 NA 60.87 NA 70.73 61.90 NA NA 77.14 NA NA NA NA NA NA NA NA NA NA 66.67 NA NA 79.17 NA NA NA NA NA NA NA 61.54 NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6456758_6457578 chr2R_6456758_6457325 chr2R_6456747_6456757;chr2R_6457579_6457647 100.00 100.00 100.00 93.33 100.00 88.89 100.00 96.30 100.00 NA 100.00 94.74 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 85.71 100.00 NA 100.00 100.00 88.89 NA 100.00 92.59 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 96.43 83.33 100.00 87.50 NA NA 100.00 NA NA 100.00 K intron_retention Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629585_2629921 chr3L_2629584_2629585;chr3L_2629921_2629922 chr3L_2629141_2629584;chr3L_2629922_2630021 97.87 94.74 96.15 98.46 100.00 93.75 93.55 98.55 96.97 100.00 100.00 96.30 93.85 98.04 100.00 99.24 100.00 100.00 97.56 97.73 95.00 NA 100.00 100.00 86.67 97.78 96.00 NA 96.15 100.00 97.06 100.00 100.00 100.00 93.75 100.00 100.00 92.31 100.00 97.22 100.00 98.21 96.55 92.31 91.67 97.37 90.00 97.78 97.96 90.91 100.00 100.00 100.00 NA 96.23 96.15 100.00 100.00 K intron_retention shep,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5161403_5163286 chr3L_5161402_5161403;chr3L_5163286_5163287 chr3L_5161350_5161402;chr3L_5163287_5163355 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8709,I_chr2R_4027128_4027182,I_chr2R_4027682_4027747,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4027128_4027183 chr2R_4027127_4027128;chr2R_4027183_4027184 chr2R_4027028_4027127;chr2R_4027184_4027282 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 1.32 0.00 0.00 1.40 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG15012 chr3L - chr3L_4291817_4291898 chr3L_4291817_4291874 chr3L_4291687_4291816;chr3L_4291899_4291964 100.00 98.82 100.00 99.71 100.00 100.00 100.00 99.69 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.63 100.00 97.84 99.47 100.00 99.49 99.63 100.00 100.00 100.00 100.00 99.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.48 100.00 99.02 100.00 99.41 100.00 K intron_retention CG14814,I_chrX_1757755_1757801 chrX - chrX_1756994_1757059 chrX_1756993_1756994;chrX_1757059_1757060 chrX_1756736_1756993;chrX_1757060_1757738 0.00 0.00 0.00 25.00 0.00 0.00 0.00 3.33 2.04 NA 0.00 2.56 0.00 NA 0.00 4.76 0.00 0.00 0.00 0.00 4.35 3.70 0.00 0.00 0.00 0.00 7.41 NA NA 5.00 0.00 0.00 10.00 2.94 0.00 0.00 2.27 0.00 4.00 2.86 6.67 4.88 0.00 0.00 5.00 11.76 9.68 0.00 4.44 0.00 4.17 0.00 8.33 3.12 0.00 0.00 0.00 7.14 K cassette syd,I_chr3L_7924891_7925400 chr3L - chr3L_7919938_7921016 chr3L_7919938_7920859;chr3L_7920921_7921016 chr3L_7920860_7920920 chr3L_7919673_7919937;chr3L_7921017_7921217 33.33 27.27 42.86 28.21 50.00 33.33 20.83 40.62 32.00 33.33 29.17 44.44 61.54 30.00 32.00 32.14 34.78 24.00 30.00 42.59 35.29 44.44 27.03 36.67 27.78 28.57 28.57 9.68 33.33 25.00 42.42 47.06 30.30 45.16 40.00 33.33 37.84 32.14 30.00 6.35 29.63 32.65 47.06 28.57 39.29 33.33 39.29 52.63 31.11 28.95 44.12 35.00 40.00 26.92 19.05 44.44 36.36 25.86 K alternative_last_exon Vha100-1,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24962422_24962803,chr3R_24962422_24962797 chr3R_24962422_24962626 chr3R_24962804_24963008 chr3R_24962627_24962695 chr3R_24962326_24962421 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention kraken chr2L + chr2L_853279_853544 chr2L_853278_853279;chr2L_853544_853545 chr2L_853192_853278;chr2L_853545_854691 0.00 0.00 3.03 11.11 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 3.37 2.61 1.01 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 2.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 K jcn_only_AA CG11880,I_chr3R_24949827_24951052,CE_chr3R_24962426_24962797 chr3R + chr3R_24949827_24951129;chr3R_24949827_24951126 chr3R_24949827_24951052 chr3R_24949727_24949826;chr3R_24951130_24951152 0.61 0.00 0.00 1.01 0.00 0.00 5.13 0.59 0.47 0.00 0.00 0.61 0.00 0.00 1.46 0.00 2.00 0.97 0.86 0.45 0.00 2.02 0.84 0.00 3.70 1.31 0.76 0.00 2.01 0.72 0.94 0.69 1.30 2.99 2.47 4.00 1.07 0.00 0.00 0.75 1.21 0.00 0.00 0.55 0.00 1.11 1.06 0.45 1.39 0.00 0.90 1.15 0.00 0.00 0.00 2.86 0.00 0.58 K intron_retention CG1308,CG1295 chr3L + chr3L_4195388_4195589 chr3L_4195387_4195388;chr3L_4195589_4195590 chr3L_4195360_4195387;chr3L_4195590_4195715 47.06 54.55 36.36 42.86 NA NA 84.62 42.86 50.00 NA NA 40.00 45.45 NA NA 53.33 63.64 NA 58.33 52.38 NA 50.00 23.08 NA NA 60.00 NA NA NA NA 69.23 NA 73.33 46.15 NA NA 33.33 NA NA 37.50 NA 36.84 NA NA NA NA NA NA 47.06 NA 18.75 NA NA NA NA NA NA NA K intron_retention PMCA,I_chr4_350028_350896,E_chr4_350055_363541,I_chr4_350064_350896,I_chr4_350959_363547,I_chr4_352629_354970,I_chr4_352629_358161,RI_chr4_355160_363547,I_chr4_371836_372509,I_chr4_373671_374568,I_chr4_376108_379519 chr4 - chr4_350966_351287 chr4_350965_350966;chr4_351287_351288 chr4_350897_350965;chr4_351288_351338 53.33 NA 30.77 47.06 NA NA 92.86 73.68 45.16 NA NA 40.00 NA 42.86 NA 70.83 NA NA 53.33 52.94 NA NA NA NA NA NA NA NA NA NA 41.67 NA NA 52.38 NA NA NA NA NA 88.89 NA 36.36 NA 54.55 NA 90.00 NA 87.50 60.87 NA 87.50 NA NA NA NA NA NA NA K intron_retention CaMKII,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,I_chr4_1071489_1071884,RI_chr4_1071489_1071968,I_chr4_1071569_1071884,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1071675_1071813 chr4_1071674_1071675;chr4_1071813_1071814 chr4_1071575_1071674;chr4_1071814_1071860 88.89 88.89 90.91 100.00 NA 88.89 86.11 90.91 94.12 NA NA 95.45 83.33 88.24 90.91 94.12 90.00 NA 87.50 85.71 88.89 NA 91.67 NA 88.89 60.00 90.00 NA NA NA 88.89 NA NA 84.00 92.86 100.00 NA NA NA 88.89 NA 90.00 76.47 NA NA NA NA NA 88.24 NA 100.00 91.67 NA NA 88.89 NA NA 88.89 K intron_retention Mdh chr3R + chr3R_22981992_22982061 chr3R_22981991_22981992;chr3R_22982061_22982062 chr3R_22981863_22981991;chr3R_22982062_22982392 6.25 5.13 6.02 8.16 7.84 5.51 7.33 9.43 8.75 4.26 5.13 5.42 5.93 6.20 6.29 14.39 6.40 6.56 8.93 5.12 7.34 6.76 8.11 6.80 5.63 2.70 5.38 9.86 4.10 3.81 7.27 4.55 4.08 8.46 4.55 9.38 1.82 8.00 2.22 4.97 4.42 4.92 10.20 8.33 1.65 6.33 7.92 3.09 7.30 8.45 5.71 9.09 10.91 2.90 6.25 6.19 8.64 5.70 K jcn_only_AD sd,noncoding_23930,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15706568_15707633;chrX_15706564_15707633 chrX_15706472_15707633 chrX_15707634_15707635;chrX_15706468_15706471 39.02 NA NA NA NA NA NA NA 30.43 NA NA NA NA NA NA NA NA NA NA 47.62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N intron_retention CG17018,R_chr2L_22312023_22363414,CEI_chr2L_22325847_22356902 chr2L + chr2L_22354970_22356902 chr2L_22354969_22354970;chr2L_22356902_22356903 chr2L_22354872_22354969;chr2L_22356903_22357002 21.11 22.58 25.49 41.18 20.00 23.08 37.33 29.85 29.66 29.63 28.21 30.43 58.82 42.11 26.67 33.33 26.32 27.27 21.43 31.11 19.74 17.39 20.51 12.00 24.00 28.12 19.61 25.00 13.33 24.39 21.15 12.50 10.00 29.76 16.22 14.58 13.64 22.50 12.20 15.71 7.69 21.11 19.05 16.88 20.00 11.43 15.15 21.74 27.10 6.06 18.87 14.00 17.65 4.55 25.45 14.63 20.00 12.00 K jcn_only_AA CG2924,I_chrX_2160702_2160852,I_chrX_2160752_2160852,I_chrX_2163738_2164560,I_chrX_2168373_2168893 chrX - chrX_2160705_2160852 chrX_2160752_2160852 chrX_2160853_2160952;chrX_2160652_2160704 1.72 0.00 0.00 0.00 5.71 0.00 5.36 0.00 2.97 2.70 2.63 0.93 2.13 0.00 3.17 1.94 0.00 3.92 4.62 2.51 2.44 3.23 3.45 2.50 4.55 1.52 0.00 0.00 1.11 1.20 5.48 1.20 1.56 3.33 4.88 2.08 2.04 3.70 1.67 2.76 1.77 2.50 5.26 1.59 0.94 1.67 4.88 1.72 0.72 0.00 4.26 0.00 0.00 0.00 1.28 0.00 0.00 1.63 K intron_retention sage,RI_chr3R_5088705_5088796,RI_chr3R_5090799_5091007 chr3R - chr3R_5088736_5088796 chr3R_5088735_5088736;chr3R_5088796_5088797 chr3R_5088467_5088735;chr3R_5088797_5088896 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.70 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 5.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA 0.00 NA NA K jcn_only_AD betaTub56D,I_chr2R_15336252_15336648,I_chr2R_15336252_15337409,I_chr2R_15336252_15338966 chr2R - chr2R_15336252_15338966 chr2R_15336252_15338937 chr2R_15336154_15336251;chr2R_15338967_15339039 100.00 99.89 99.96 99.98 100.00 100.00 100.00 100.00 99.98 99.86 100.00 100.00 100.00 99.94 100.00 100.00 100.00 100.00 100.00 99.98 100.00 99.93 99.97 99.92 100.00 100.00 100.00 100.00 99.72 100.00 99.91 100.00 100.00 100.00 100.00 99.95 99.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.97 99.93 100.00 100.00 99.93 99.92 99.89 100.00 100.00 99.96 99.96 99.96 K intron_retention CG4360 chr3R - chr3R_16151875_16152037 chr3R_16151874_16151875;chr3R_16152037_16152038 chr3R_16150089_16151874;chr3R_16152038_16152520 29.14 29.84 43.18 44.69 50.00 53.72 52.73 38.42 32.55 21.36 47.96 32.38 38.10 41.49 43.18 54.92 45.24 44.44 47.22 33.99 50.51 32.95 31.78 25.95 24.00 45.19 28.70 28.57 40.28 21.31 50.49 18.31 12.50 37.50 27.17 25.00 24.24 25.09 25.34 24.07 13.29 30.91 39.42 22.46 16.54 16.40 28.70 12.81 29.14 28.07 27.02 24.06 20.39 25.91 47.15 26.29 22.18 12.50 K alternative_donor Ku80 chr2L - chr2L_15770993_15771081 chr2L_15770993_15771049 chr2L_15770897_15770992;chr2L_15771082_15771134 100.00 88.89 100.00 94.44 NA 87.50 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 90.00 87.50 100.00 95.83 NA 100.00 100.00 NA NA 100.00 88.89 100.00 91.67 NA 100.00 85.71 100.00 100.00 NA 100.00 100.00 NA 88.89 100.00 90.00 100.00 87.50 100.00 100.00 100.00 100.00 88.89 94.74 100.00 100.00 NA NA NA 88.89 NA 100.00 100.00 K intron_retention CG1340 chr3R + chr3R_26552877_26552936 chr3R_26552876_26552877;chr3R_26552936_26552937 chr3R_26551839_26552876;chr3R_26552937_26553506 0.00 0.00 NA 8.00 0.00 5.26 3.23 0.00 0.00 NA NA 4.08 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 10.53 0.00 3.23 0.00 14.29 9.68 0.00 4.35 NA 0.00 0.00 0.00 NA 8.89 0.00 0.00 0.00 1.35 0.00 0.00 NA 0.00 0.00 0.00 0.00 3.03 0.00 0.00 3.45 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10825 chr3R + chr3R_16956708_16956783 chr3R_16956707_16956708;chr3R_16956783_16956784 chr3R_16956203_16956707;chr3R_16956784_16958369 92.31 NA 100.00 100.00 NA NA 88.89 100.00 86.67 NA NA 100.00 NA NA 100.00 NA NA NA NA 100.00 NA 83.33 91.67 100.00 88.89 NA 90.00 90.00 100.00 100.00 100.00 88.89 92.31 NA 100.00 90.91 92.31 NA 90.91 91.67 83.33 91.67 NA 100.00 100.00 NA NA 81.25 92.86 90.00 81.82 NA NA NA NA NA NA 94.12 K alternative_last_exon mub,RI_chr3L_21901021_21901163,I_chr3L_21908756_21909179,CE_chr3L_21915743_21915791 chr3L + chr3L_21914428_21918279 chr3L_21914428_21915678 chr3L_21918280_21922977 chr3L_21915679_21917258 chr3L_21914193_21914427 72.00 79.31 72.00 61.36 77.78 73.91 58.82 67.39 74.63 72.00 61.54 75.00 72.00 75.00 76.92 63.41 76.19 78.26 72.73 70.00 64.29 69.23 76.74 82.35 76.19 66.67 77.78 85.00 65.22 66.67 69.23 57.14 58.82 69.39 71.43 68.00 81.08 82.14 81.82 67.44 54.55 75.86 73.91 71.88 59.09 55.88 75.00 51.28 71.19 73.08 74.29 75.00 72.22 76.19 74.19 73.91 70.00 45.16 K intron_retention CG32369,noncoding_11198 chr3L - chr3L_7797808_7802096 chr3L_7797807_7797808;chr3L_7802096_7802097 chr3L_7797529_7797807;chr3L_7802097_7802112 0.00 NA NA NA NA NA 14.29 NA 4.17 NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA NA 0.00 0.00 0.00 NA 3.57 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA K alternative_donor CG1516,I_chr2R_5743716_5743899,I_chr2R_5746990_5747874,RI_chr2R_5752988_5757801 chr2R - chr2R_5747958_5748079 chr2R_5747958_5748029 chr2R_5747875_5747957;chr2R_5748080_5748239 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 NA 91.67 NA 100.00 100.00 100.00 100.00 88.89 100.00 93.75 NA 100.00 85.71 NA NA 88.89 100.00 NA NA NA 100.00 NA 100.00 94.12 88.89 NA 88.89 NA 100.00 100.00 NA 95.24 100.00 NA 87.50 100.00 100.00 100.00 100.00 NA 100.00 85.71 NA NA 91.67 NA NA NA K intron_retention Nap1,I_chr2R_19794246_19794473 chr2R - chr2R_19793065_19793127 chr2R_19793064_19793065;chr2R_19793127_19793128 chr2R_19792738_19793064;chr2R_19793128_19793316 0.12 0.00 0.22 0.24 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.14 0.13 0.00 0.22 0.12 0.00 0.26 0.00 0.12 0.00 0.21 0.20 0.22 0.21 0.00 0.72 1.03 1.69 0.00 0.15 0.00 0.00 0.35 0.00 0.00 0.27 0.27 0.20 0.24 0.00 0.40 0.30 0.18 0.33 0.00 0.24 0.56 0.38 0.11 0.23 0.00 0.00 0.12 0.00 0.00 0.11 0.19 K jcn_only_AD HmgZ,RI_chr2R_17586106_17589692,I_chr2R_17586106_17590061,I_chr2R_17586106_17591464 chr2R - chr2R_17586106_17590181 chr2R_17586106_17590177 chr2R_17586006_17586105;chr2R_17590182_17590873 14.17 14.79 14.45 13.50 14.17 16.00 15.98 14.04 15.63 21.28 7.41 16.04 15.58 10.91 15.76 14.34 10.95 9.28 11.48 13.15 16.42 8.20 16.42 15.11 12.12 11.43 18.02 10.13 12.50 12.80 12.09 12.96 10.31 11.65 15.74 14.06 13.33 13.33 16.36 7.96 11.03 10.90 11.92 16.85 14.88 15.92 17.21 15.03 14.04 18.59 15.75 18.29 11.34 16.92 8.62 18.57 20.11 17.47 K intron_retention lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3955517_3957375 chr2R_3955516_3955517;chr2R_3957375_3957376 chr2R_3955509_3955516;chr2R_3957376_3957784 0.00 0.00 0.00 2.50 0.00 0.00 4.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 3.57 NA NA 10.53 0.00 3.12 0.00 0.00 2.22 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 NA NA 0.00 K intron_retention Pdp1,RI_chr3L_7809841_7810536,I_chr3L_7813130_7818683,I_chr3L_7831960_7846282 chr3L - chr3L_7810763_7811177 chr3L_7810762_7810763;chr3L_7811177_7811178 chr3L_7810537_7810762;chr3L_7811178_7811323 31.25 NA NA 55.56 NA 26.67 25.00 41.67 20.00 NA NA 33.33 NA 30.77 NA 41.67 NA NA 41.67 30.00 NA 23.53 40.00 35.71 NA NA NA NA NA NA 17.65 NA 33.33 NA 45.45 33.33 23.53 NA 31.25 29.41 NA 27.78 NA 31.25 NA NA NA NA 25.00 NA 33.33 NA NA NA NA 33.33 NA NA K alternative_donor AIF chr2L + chr2L_2152466_2152662;chr2L_2152463_2152662 chr2L_2152271_2152662 chr2L_2152663_2152944;chr2L_2152233_2152270 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 97.62 100.00 88.24 97.67 100.00 95.24 100.00 93.75 92.86 95.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 96.23 97.06 100.00 92.11 100.00 100.00 100.00 89.47 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor noncoding_22888,I_chrX_10152994_10153223 chrX - chrX_10152994_10153223 chrX_10152998_10153223 chrX_10153224_10153323;chrX_10152911_10152993 81.75 NA NA NA NA NA 77.78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention bys chrX + chrX_7797369_7797430 chrX_7797368_7797369;chrX_7797430_7797431 chrX_7797249_7797368;chrX_7797431_7797770 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 1.67 0.00 1.09 0.00 0.00 1.27 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Ent1 chr2L - chr2L_357749_357815 chr2L_357767_357815 chr2L_357816_357903;chr2L_357423_357748 93.33 91.67 100.00 95.00 88.89 81.82 90.48 95.45 84.62 NA 87.50 94.29 90.91 82.35 91.67 93.75 87.50 91.67 92.31 96.88 85.71 100.00 100.00 85.71 100.00 75.00 92.31 100.00 100.00 90.00 92.86 NA 90.91 95.24 NA 100.00 93.33 NA 84.62 94.44 100.00 95.45 90.00 100.00 NA 100.00 100.00 100.00 93.10 100.00 100.00 91.67 NA 100.00 91.67 100.00 93.33 87.50 N jcn_only_AA Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629579_2629913;chr3L_2629613_2629913;chr3L_2629585_2629913;chr3L_2629527_2629913;chr3L_2629597_2629913 chr3L_2629684_2629913 chr3L_2629914_2629921;chr3L_2629427_2629526 0.00 0.37 0.23 0.20 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.52 0.00 0.00 0.18 0.00 0.00 0.39 0.09 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.40 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD LIMK1,I_chrX_12488942_12489000 chrX - chrX_12484518_12485963;chrX_12484518_12486079 chrX_12484518_12486000 chrX_12483874_12484517;chrX_12486080_12486162 14.69 19.61 12.77 21.43 16.13 16.67 11.76 12.37 18.25 5.41 20.37 13.04 18.75 19.61 10.94 14.52 13.73 17.24 16.00 19.42 11.63 12.66 12.20 14.81 19.35 15.00 7.02 6.52 22.78 23.73 16.67 13.64 28.12 9.80 21.82 21.82 5.26 3.85 16.13 10.58 14.81 19.05 13.51 6.78 12.00 8.33 6.06 18.25 13.27 NA 14.63 18.18 NA NA 14.75 6.67 11.54 15.91 K alternative_donor CG1674,F_chr4_252231_252560,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_251522_252560;chr4_252227_252560 chr4_252254_252560 chr4_252561_252603;chr4_251483_251521 0.00 0.00 0.00 16.67 NA 0.00 0.00 22.22 0.00 NA NA 12.50 0.00 0.00 0.00 11.11 0.00 50.00 0.00 16.67 NA NA 50.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA 50.00 NA NA 10.00 0.00 0.00 33.33 NA NA 0.00 NA 0.00 33.33 K alternative_acceptor CG9526 chr2L + chr2L_6456209_6456364 chr2L_6456209_6456326 chr2L_6456106_6456208;chr2L_6456365_6456682 100.00 100.00 NA 100.00 NA NA 100.00 NA 100.00 NA NA 100.00 NA 87.50 NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA 100.00 100.00 100.00 85.71 NA 85.71 NA 100.00 NA NA NA NA NA 100.00 90.00 NA NA NA NA NA 85.71 NA K jcn_only_AA plexA,RI_chr4_1036247_1047588,RI_chr4_1040642_1047395,RF_chr4_1044307_1047399 chr4 - chr4_1035928_1036050 chr4_1035979_1036050 chr4_1036051_1036244;chr4_1035592_1035927 97.95 100.00 95.24 99.29 100.00 93.55 98.54 97.60 96.59 NA 97.67 99.22 98.82 97.65 98.57 98.48 98.46 96.88 99.13 97.60 100.00 100.00 96.55 100.00 100.00 98.31 98.36 100.00 100.00 98.08 97.37 100.00 100.00 97.12 97.78 95.00 96.43 95.65 95.00 96.77 97.56 98.53 97.30 97.18 91.67 96.25 97.83 98.33 95.68 100.00 94.44 96.67 100.00 100.00 100.00 97.56 100.00 95.08 K jcn_only_AD nes chr3L - chr3L_19253331_19253632;chr3L_19253331_19253636;chr3L_19253331_19253676;chr3L_19253331_19253648;chr3L_19253331_19253745;chr3L_19253331_19253764 chr3L_19253331_19253609 chr3L_19253215_19253330;chr3L_19253765_19253779 0.00 3.57 2.38 2.33 0.00 3.03 3.64 5.77 2.00 3.12 NA 0.00 0.00 0.00 2.38 2.08 NA 4.17 2.27 1.61 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 2.27 0.00 4.65 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 2.67 NA 0.00 0.00 0.00 0.00 0.00 4.17 0.00 3.23 K jcn_only_AD eIF4G,I_chr4_948813_950447 chr4 - chr4_950758_951137 chr4_950758_950907 chr4_950706_950757;chr4_951138_951213 0.00 NA 6.90 2.73 0.00 0.00 4.00 2.94 2.73 NA 0.00 1.18 0.00 2.50 0.00 1.80 0.00 2.94 0.00 0.00 0.00 0.00 4.65 0.00 0.00 NA 3.12 NA NA NA 0.00 NA NA 0.00 3.57 0.00 NA NA NA 0.00 NA 1.16 0.00 2.86 NA NA NA NA 0.00 NA 3.85 4.17 NA NA 0.00 NA NA NA K intron_retention vir-1,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,noncoding_2764,I_chr2L_12421830_12423260 chr2L - chr2L_12421830_12423333 chr2L_12421829_12421830;chr2L_12423333_12423334 chr2L_12421816_12421829;chr2L_12423334_12423360 73.81 67.27 85.19 76.42 84.31 78.95 82.76 76.52 80.00 70.00 75.51 82.99 82.88 72.22 86.96 80.67 71.23 86.27 76.14 79.03 80.36 45.00 41.86 65.71 73.53 82.35 54.84 64.29 72.09 47.83 78.70 78.57 83.33 78.81 73.08 50.00 45.16 61.54 88.24 68.18 75.00 80.00 76.92 55.10 82.05 66.67 58.97 70.97 75.00 51.85 60.00 41.86 60.00 56.52 83.16 45.65 55.38 73.81 K intron_retention CG5919 chr3R + chr3R_17096591_17096686 chr3R_17096590_17096591;chr3R_17096686_17096687 chr3R_17096309_17096590;chr3R_17096687_17097192 100.00 98.08 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.36 98.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG14995,I_chr3L_4095875_4097205,I_chr3L_4096047_4096903 chr3L - chr3L_4095294_4095635 chr3L_4095293_4095294;chr3L_4095635_4095636 chr3L_4095200_4095293;chr3L_4095636_4095874 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 NA 3.39 3.45 0.00 NA 0.00 0.00 NA 0.00 0.00 6.67 0.00 0.00 0.00 3.57 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 5.71 0.00 NA 0.00 0.00 0.00 0.00 NA 4.76 0.00 0.00 0.00 0.00 0.00 K intron_retention Pegarn chr3L + chr3L_12788189_12788262 chr3L_12788188_12788189;chr3L_12788262_12788263 chr3L_12788120_12788188;chr3L_12788263_12788330 18.18 12.82 19.35 26.67 14.29 26.67 24.00 19.35 13.21 17.24 13.04 18.60 NA 31.82 18.52 17.65 NA 10.34 15.00 17.65 15.38 37.50 13.73 13.64 24.00 22.22 18.75 24.24 68.18 28.57 29.41 28.57 50.00 15.15 18.52 9.68 12.73 26.32 16.90 25.64 50.00 12.90 13.33 18.18 20.00 15.79 11.36 31.25 11.67 23.08 12.50 16.13 12.20 11.11 19.51 18.18 9.09 13.33 K intron_retention Trx-2,I_chr2L_9613459_9615301,I_chr2L_9613592_9615301,E_chr2L_9615344_9615833,I_chr2L_9615252_9615301 chr2L + chr2L_9613541_9615301 chr2L_9613540_9613541;chr2L_9615301_9615302 chr2L_9613492_9613540;chr2L_9615302_9615343 0.18 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.35 0.00 0.25 0.20 0.00 0.20 0.00 0.86 0.00 0.00 0.00 0.18 0.22 0.33 0.12 0.00 0.40 0.00 0.24 0.94 0.33 0.00 0.00 0.33 0.53 0.00 0.32 0.55 0.00 0.00 0.12 0.28 0.19 0.47 0.00 0.20 0.33 0.36 0.09 0.64 0.11 0.23 0.18 0.21 0.00 0.10 0.35 0.00 0.07 0.35 K intron_retention lark,noncoding_11093,RI_chr3L_7334219_7334452 chr3L + chr3L_7334215_7334452 chr3L_7334214_7334215;chr3L_7334452_7334453 chr3L_7334119_7334214;chr3L_7334453_7334552 0.00 0.00 1.27 1.54 0.00 0.00 0.00 1.64 0.69 0.00 0.00 1.68 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.63 0.00 0.00 1.50 0.00 0.00 0.00 2.68 3.70 0.00 0.00 1.59 0.00 0.00 0.83 0.00 0.00 0.43 0.00 0.56 1.09 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 2.27 0.00 1.67 0.00 0.00 0.00 0.00 K jcn_only_AA Csl4,I_chr2L_11123252_11123311,RI_chr2L_11130039_11130111 chr2L - chr2L_11123252_11123311 chr2L_11123258_11123311 chr2L_11123312_11123411;chr2L_11123152_11123251 100.00 94.23 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 97.30 96.30 100.00 100.00 94.59 98.59 100.00 98.04 100.00 99.17 100.00 95.24 98.61 100.00 100.00 100.00 98.18 98.41 96.88 97.78 95.35 100.00 100.00 98.11 100.00 100.00 100.00 98.39 100.00 98.46 97.22 98.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 98.57 99.14 96.15 K intron_retention Elp3 chr2L + chr2L_4444837_4444894 chr2L_4444836_4444837;chr2L_4444894_4444895 chr2L_4444732_4444836;chr2L_4444895_4444963 100.00 100.00 100.00 88.89 92.31 100.00 93.33 96.00 100.00 NA 100.00 95.83 92.86 100.00 94.44 100.00 100.00 100.00 100.00 96.30 100.00 NA 92.31 90.91 100.00 100.00 93.33 NA 88.89 NA 96.30 NA 100.00 96.88 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 90.91 100.00 96.97 100.00 94.12 87.50 NA NA 94.44 85.00 100.00 100.00 K intron_retention CG2909 chrX + chrX_10221037_10221098 chrX_10221036_10221037;chrX_10221098_10221099 chrX_10220892_10221036;chrX_10221099_10222105 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 9.09 4.00 10.81 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA NA NA 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 NA N alternative_acceptor RpS20 chr3R + chr3R_16647996_16648154 chr3R_16647996_16648139 chr3R_16647888_16647995;chr3R_16648155_16648294 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.35 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG17490 chr2L + chr2L_22431301_22432684 chr2L_22431301_22431358 chr2L_22431022_22431300;chr2L_22432685_22433056 94.87 89.36 96.15 95.00 96.55 91.11 100.00 90.11 93.65 95.45 80.43 94.87 97.92 92.16 98.04 99.33 97.87 96.08 94.83 92.16 90.48 98.25 91.49 96.00 95.65 86.67 97.14 95.65 97.14 82.50 92.21 97.22 91.53 94.90 97.56 91.67 96.97 88.89 92.50 95.12 95.24 92.08 86.96 90.62 97.44 94.34 98.08 92.59 94.44 97.62 98.39 90.00 97.22 96.77 93.94 91.11 91.94 87.78 K jcn_only_AD nudE chr3L + chr3L_9892498_9892825;chr3L_9892375_9892825 chr3L_9892456_9892825 chr3L_9892826_9893184;chr3L_9892344_9892374 97.96 NA NA 90.91 NA NA 95.65 NA 100.00 NA NA 100.00 NA NA NA 95.92 NA NA NA 93.94 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 95.24 NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention CG6701,RI_chr2R_9866896_9867532 chr2R - chr2R_9866623_9866688 chr2R_9866622_9866623;chr2R_9866688_9866689 chr2R_9866447_9866622;chr2R_9866689_9866895 12.05 12.36 9.57 37.10 10.67 7.41 23.13 11.76 13.21 15.25 17.86 12.76 15.31 13.68 10.49 13.51 17.44 11.61 10.34 10.22 15.38 9.21 16.79 12.35 25.74 20.72 18.10 13.04 12.75 15.69 9.24 2.70 9.38 15.15 9.91 12.82 16.53 12.50 11.02 8.81 22.64 11.65 12.05 9.90 11.90 4.23 5.56 11.01 10.89 15.15 7.83 15.52 9.68 11.76 6.35 16.13 8.33 6.85 K intron_retention Smg5,I_chr2L_13903932_13904208 chr2L - chr2L_13903932_13904397 chr2L_13903931_13903932;chr2L_13904397_13904398 chr2L_13903832_13903931;chr2L_13904398_13904515 1.56 0.00 0.00 8.54 2.78 0.00 5.41 3.12 2.02 0.00 0.00 2.35 4.17 0.00 0.00 2.78 0.00 0.00 0.00 2.44 0.00 1.75 9.52 11.76 NA 2.50 18.18 15.62 9.30 6.06 1.16 0.00 1.37 0.00 0.00 11.11 5.88 NA 0.00 4.65 0.00 2.33 3.45 0.00 0.00 0.00 0.00 4.41 0.00 NA 3.23 NA 0.00 NA 3.57 NA NA 0.00 K intron_retention ZnT63C chr3L + chr3L_3303853_3304601 chr3L_3303852_3303853;chr3L_3304601_3304602 chr3L_3303840_3303852;chr3L_3304602_3304665 1.87 2.33 1.15 1.06 0.00 2.33 1.98 0.87 1.92 0.00 2.38 8.28 5.56 2.44 2.44 1.44 0.00 1.35 2.35 2.31 0.00 1.99 1.82 1.48 8.14 0.00 1.00 4.17 3.41 0.00 0.67 0.00 2.86 3.08 2.63 6.94 3.88 3.23 3.61 2.39 0.00 1.21 0.00 2.29 0.00 1.83 0.95 1.95 2.69 0.00 2.45 3.47 0.00 0.00 1.75 1.87 0.00 0.00 K jcn_only_AA Rcd6,I_chr2R_16518342_16520460,I_chr2R_16518620_16518916,RI_chr2R_16520388_16520855 chr2R - chr2R_16518342_16520294 chr2R_16518620_16520294 chr2R_16520295_16520328;chr2R_16518242_16518341 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention msps,I_chr3R_11877071_11877796 chr3R + chr3R_11885098_11885182 chr3R_11885097_11885098;chr3R_11885182_11885183 chr3R_11884965_11885097;chr3R_11885183_11885406 0.00 0.00 NA NA NA NA 0.00 NA NA NA NA 11.76 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 NA NA NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA K intron_retention CG31777,RI_chr2L_3706792_3706842,cutlet chr2L - chr2L_3706792_3706842 chr2L_3706791_3706792;chr2L_3706842_3706843 chr2L_3706692_3706791;chr2L_3706843_3706942 45.80 NA NA 90.91 NA NA NA 50.00 38.10 NA NA 50.00 NA NA 45.45 56.52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 26.67 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA 46.15 NA NA NA NA NA NA NA 33.33 NA K intron_retention CG1092 chr3R + chr3R_92928_92982 chr3R_92927_92928;chr3R_92982_92983 chr3R_92694_92927;chr3R_92983_94005 0.86 0.54 1.45 1.08 1.22 1.16 1.04 1.10 0.99 0.00 0.67 0.82 0.63 0.66 0.48 0.86 0.82 1.13 0.74 0.74 0.35 1.92 0.54 0.70 1.54 1.29 1.06 1.14 1.56 0.39 2.30 1.32 1.09 0.86 1.21 1.40 0.69 0.96 0.64 0.91 2.01 0.88 0.77 0.64 0.95 0.75 0.77 1.85 0.81 0.39 0.98 0.64 1.03 0.85 0.83 0.99 0.60 0.65 K intron_retention CG2685,CG2701,RI_chrX_2612780_2612845,ttm50 chrX - chrX_2607465_2607528 chrX_2607464_2607465;chrX_2607528_2607529 chrX_2607367_2607464;chrX_2607529_2607654 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 3.45 0.00 0.00 0.00 NA NA 7.69 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 K intron_retention rho-7,noncoding_6143 chr2R - chr2R_7874468_7874531 chr2R_7874467_7874468;chr2R_7874531_7874532 chr2R_7874018_7874467;chr2R_7874532_7874731 3.23 1.75 0.00 10.71 0.00 3.23 7.69 8.33 7.14 0.00 6.25 8.77 0.00 5.00 2.50 4.88 7.14 7.32 11.11 9.57 5.41 2.38 2.94 6.56 0.00 5.26 8.57 7.14 4.17 1.72 6.02 0.00 2.80 1.59 0.00 5.26 3.70 4.65 2.90 4.76 0.00 10.59 0.00 3.08 0.99 2.11 2.60 0.00 3.64 3.23 0.00 0.00 7.46 0.00 10.42 0.00 2.38 0.00 K intron_retention CG30492,C_chr2R_3522706_3523025,I_chr2R_3524699_3524788,RI_chr2R_3536203_3536977,I_chr2R_3543397_3543455 chr2R + chr2R_3522706_3526102 chr2R_3522705_3522706;chr2R_3526102_3526103 chr2R_3522606_3522705;chr2R_3526103_3526410 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 6.82 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 K intron_retention Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21107985_21108036 chr2L_21107984_21107985;chr2L_21108036_21108037 chr2L_21107959_21107984;chr2L_21108037_21108227 90.91 93.33 93.33 84.62 93.75 86.67 86.21 92.50 91.38 NA 76.92 76.67 100.00 85.71 90.48 87.10 94.74 92.31 84.62 83.33 NA 93.33 92.31 80.00 100.00 91.67 92.86 90.91 NA 100.00 85.71 NA 90.91 91.67 90.91 100.00 94.44 100.00 80.00 95.45 NA 92.86 73.33 76.19 NA NA NA 94.12 85.71 NA 87.50 91.67 NA NA 80.00 87.50 90.00 87.50 K multi_cassette put chr3R - chr3R_10448026_10450921 chr3R_10448026_10448964;chr3R_10449142_10449208;chr3R_10449395_10450921 chr3R_10448965_10449141;chr3R_10449209_10449394 chr3R_10447989_10448025;chr3R_10450922_10451371 100.00 100.00 100.00 88.68 97.73 100.00 98.72 98.99 100.00 100.00 97.92 100.00 100.00 100.00 98.73 98.88 100.00 100.00 98.48 100.00 100.00 100.00 100.00 100.00 100.00 98.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.12 100.00 98.39 100.00 100.00 100.00 100.00 98.31 99.23 100.00 100.00 100.00 98.72 100.00 100.00 99.24 100.00 98.72 100.00 100.00 100.00 98.86 100.00 100.00 100.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2392054 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2392054 chrX_2387584_2387709;chrX_2388437_2388670 chrX_2387149_2387248;chrX_2392055_2392148 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA 75.00 NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention CG4424,trem chr3R - chr3R_15852909_15852968 chr3R_15852908_15852909;chr3R_15852968_15852969 chr3R_15852774_15852908;chr3R_15852969_15853471 0.00 NA 0.00 NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 10.53 NA NA 0.00 0.00 NA NA 0.00 NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 K intron_retention CG5021 chr3L + chr3L_8960617_8960680 chr3L_8960616_8960617;chr3L_8960680_8960681 chr3L_8960382_8960616;chr3L_8960681_8960835 10.81 6.38 8.93 14.29 9.68 14.29 11.94 13.16 9.09 5.88 10.42 8.54 11.11 9.80 10.14 14.29 11.76 9.76 14.29 12.50 11.32 10.61 10.53 10.94 11.11 13.21 7.41 9.76 17.39 15.00 14.52 11.11 9.52 10.26 5.88 8.33 9.09 9.09 11.69 4.35 8.20 14.43 12.82 5.45 15.00 12.07 9.09 13.95 11.46 13.64 12.77 10.81 10.34 12.24 9.68 10.34 10.84 7.81 K jcn_only_AD Kr-h2 chr2L + chr2L_6071181_6072413 chr2L_6071188_6072413 chr2L_6072414_6072676;chr2L_6071112_6071180 99.67 99.70 100.00 99.71 100.00 99.10 99.41 99.67 99.41 99.40 100.00 99.79 98.80 100.00 99.61 99.48 100.00 100.00 99.59 100.00 99.47 99.09 99.21 99.69 100.00 98.54 99.47 100.00 100.00 99.27 99.70 99.51 99.24 99.67 98.55 99.39 100.00 100.00 99.76 99.69 100.00 99.76 99.53 99.17 98.65 99.76 99.74 100.00 100.00 99.14 99.66 99.38 100.00 98.91 99.29 99.69 99.04 98.62 K intron_retention ERp60,I_chr2R_7776895_7777652,I_chr2R_7776895_7778171,RI_chr2R_7790917_7791377 chr2R - chr2R_7776895_7778175 chr2R_7776894_7776895;chr2R_7778175_7778176 chr2R_7776795_7776894;chr2R_7778176_7778271 0.06 0.08 0.07 0.05 0.00 0.00 0.08 0.06 0.00 0.11 0.00 0.10 0.00 0.00 0.06 0.00 0.00 0.08 0.00 0.03 0.00 0.28 0.00 0.30 0.00 0.00 0.53 0.43 0.09 0.00 0.15 0.00 0.09 0.00 0.00 0.20 0.12 0.00 0.22 0.00 0.16 0.08 0.21 0.00 0.00 0.15 0.07 0.16 0.09 0.00 0.19 0.25 0.00 0.00 0.14 0.00 0.06 0.10 K intron_retention RpS3A,I_chr4_87364_87465,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87549_87769 chr4_87548_87549;chr4_87769_87770 chr4_87466_87548;chr4_87770_87817 99.99 99.97 99.98 100.00 99.97 100.00 100.00 99.99 100.00 100.00 100.00 99.98 100.00 99.98 100.00 99.99 99.98 100.00 99.98 99.99 99.98 100.00 100.00 100.00 100.00 99.98 99.97 100.00 99.96 99.95 99.94 100.00 99.97 99.99 100.00 100.00 99.95 100.00 99.97 99.95 99.97 100.00 100.00 100.00 100.00 100.00 100.00 99.94 99.98 100.00 99.96 100.00 99.96 99.91 99.98 100.00 100.00 99.98 K alternative_donor Fmr1,I_chr3R_5930712_5930781,I_chr3R_5934794_5935245,I_chr3R_5934801_5935537 chr3R - chr3R_5930712_5930790 chr3R_5930712_5930781 chr3R_5930612_5930711;chr3R_5930791_5930881 58.34 NA NA NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG6006 chr3R + chr3R_11984096_11984579;chr3R_11983962_11984579;chr3R_11984036_11984579;chr3R_11984029_11984579 chr3R_11984018_11984579 chr3R_11984580_11984637;chr3R_11983945_11983961 33.33 12.50 37.50 40.00 NA 30.00 33.33 7.69 38.10 NA 0.00 47.83 50.00 50.00 26.67 38.46 33.33 46.15 18.18 36.36 28.57 42.86 38.10 43.75 33.33 22.22 23.53 20.00 0.00 42.86 27.78 16.67 50.00 31.58 37.50 37.50 14.29 27.27 46.67 31.58 66.67 34.78 33.33 40.00 NA 25.00 55.56 30.00 41.38 33.33 44.44 25.00 42.86 20.00 23.08 25.00 71.43 25.00 K jcn_only_AD S2P,I_chr2R_7731333_7731381 chr2R - chr2R_7731333_7731383 chr2R_7731333_7731381 chr2R_7731233_7731332;chr2R_7731384_7731481 1.45 6.35 2.41 0.00 0.00 0.00 1.96 1.61 0.00 2.17 1.67 0.91 2.56 0.00 0.00 2.97 0.00 0.00 0.00 1.69 0.00 1.30 3.49 4.29 0.00 0.00 5.56 0.00 1.94 1.03 2.67 1.64 1.18 1.96 3.70 1.45 2.50 0.00 1.47 1.05 1.04 0.00 4.26 0.00 2.74 1.96 0.00 1.63 0.93 9.80 6.17 0.00 0.00 0.00 2.50 0.00 3.77 3.45 N jcn_only_AA CG5525,CG5780 chr2L - chr2L_12690542_12690618 chr2L_12690556_12690618 chr2L_12690619_12690687;chr2L_12690476_12690541 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.27 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor vir-1,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,noncoding_2764,I_chr2L_12421830_12423260 chr2L - chr2L_12421830_12423322;chr2L_12421830_12423260;chr2L_12421830_12423278 chr2L_12421830_12423333 chr2L_12421816_12421829;chr2L_12423334_12423360 6.72 9.00 4.44 7.90 6.72 5.88 7.20 9.06 8.61 5.77 11.11 5.41 7.06 9.80 4.86 4.70 11.41 4.49 8.47 5.10 9.82 8.78 7.79 5.17 6.82 5.83 9.03 8.85 6.98 8.63 4.86 5.52 5.26 7.31 4.61 12.84 9.55 6.29 2.53 8.82 6.62 6.89 8.93 6.53 5.15 5.39 5.99 5.88 6.32 7.90 5.67 9.12 6.38 6.49 5.05 8.83 7.57 5.29 K jcn_only_AD CG5021 chr3L + chr3L_8960084_8960227 chr3L_8960093_8960227 chr3L_8960228_8960310;chr3L_8959939_8960083 37.19 40.00 36.90 47.04 41.10 35.68 32.58 41.24 39.74 24.07 42.86 42.16 42.06 36.17 38.60 37.14 31.33 46.09 32.68 33.57 41.59 19.44 29.76 37.99 36.80 40.62 37.19 47.90 40.00 38.36 34.60 37.59 30.32 38.50 39.36 37.66 31.58 35.05 32.14 36.05 40.28 37.34 40.60 25.84 25.23 34.39 28.83 34.95 40.38 38.46 36.26 33.80 41.75 36.63 33.68 35.61 37.93 38.06 K intron_retention CG10737 chr2R + chr2R_15060394_15060936 chr2R_15060393_15060394;chr2R_15060936_15060937 chr2R_15060217_15060393;chr2R_15060937_15061148 1.49 1.72 0.93 3.45 1.00 1.20 2.13 2.26 1.20 2.33 2.34 3.17 2.33 0.00 0.93 0.00 0.00 0.78 2.25 2.99 0.00 1.42 2.07 1.49 2.06 1.68 1.85 2.38 0.00 1.48 2.41 2.50 0.74 1.46 0.78 2.44 2.17 1.85 1.65 3.03 0.00 1.24 0.00 1.54 0.00 0.00 1.72 1.03 2.01 0.98 1.09 2.44 1.38 0.68 1.65 2.92 0.43 0.00 K intron_retention CG15908_CG9410,CG15908,CG9410 chr2R + chr2R_2556940_2556996 chr2R_2556939_2556940;chr2R_2556996_2556997 chr2R_2556835_2556939;chr2R_2556997_2557075 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 3.23 11.11 5.26 0.00 4.88 NA 0.00 2.94 0.00 0.00 0.00 0.00 0.00 5.56 10.53 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 K intron_retention sqd,I_chr3R_9462248_9471474,CR33328,I_chr3R_9468150_9468236,I_chr3R_9470417_9471474 chr3R - chr3R_9462248_9468020 chr3R_9462247_9462248;chr3R_9468020_9468021 chr3R_9462148_9462247;chr3R_9468021_9468149 51.68 56.78 56.99 57.78 44.30 51.06 54.79 65.19 60.39 62.50 58.67 54.97 19.05 57.06 42.44 78.40 51.92 48.00 53.37 50.59 60.61 48.31 64.69 44.13 46.70 43.75 50.83 49.31 54.25 56.91 50.25 39.31 66.11 67.73 65.15 65.22 51.66 47.04 49.40 51.68 48.75 50.23 56.74 66.09 25.97 44.58 41.28 59.71 50.77 47.11 52.50 53.99 54.79 35.48 45.89 41.76 42.24 64.36 K intron_retention pbl chr3L - chr3L_7889953_7890011 chr3L_7889952_7889953;chr3L_7890011_7890012 chr3L_7889233_7889952;chr3L_7890012_7890161 1.85 0.00 0.00 16.90 4.88 1.69 16.07 5.06 4.00 0.00 0.00 3.23 2.13 1.64 0.00 2.50 0.00 0.00 0.00 1.85 0.00 0.00 3.23 0.00 8.62 12.50 3.61 6.25 5.71 0.00 3.77 0.00 0.00 5.48 0.00 6.56 0.00 1.28 2.15 1.00 16.13 4.35 5.26 0.00 0.00 2.35 0.00 3.28 5.88 2.94 3.57 2.00 3.77 0.00 0.00 1.32 0.00 0.00 N cassette RpL3,E_chr3R_7047964_7050565,I_chr3R_7048452_7049579,E_chr3R_7049697_7049750,I_chr3R_7049970_7050189 chr3R + chr3R_7049253_7050212 chr3R_7049253_7049579;chr3R_7049970_7050212 chr3R_7049580_7049969 chr3R_7049117_7049252;chr3R_7050213_7050289 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor shep,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5156232_5156444 chr3L_5156250_5156444 chr3L_5156445_5156803;chr3L_5156067_5156231 89.19 90.48 90.36 85.95 93.24 85.71 87.72 92.04 89.30 85.11 88.54 92.91 90.00 90.67 87.63 90.12 91.80 91.03 94.03 90.17 98.68 91.46 86.54 89.61 87.27 86.67 89.89 83.64 85.71 87.80 93.22 96.67 84.81 89.92 87.27 92.42 83.74 78.48 87.37 86.61 89.19 87.82 87.27 88.24 94.83 84.21 90.00 90.00 92.75 97.96 90.80 89.13 84.91 88.24 89.53 84.78 88.73 86.21 N cassette CG6621 chr3R - chr3R_6716568_6716815 chr3R_6716568_6716721;chr3R_6716734_6716815 chr3R_6716722_6716733 chr3R_6715539_6716567;chr3R_6716816_6717113 5.41 NA NA 10.53 NA NA 6.67 7.41 6.25 NA NA 7.14 NA NA NA 0.00 NA 0.00 NA 17.65 NA NA 4.17 NA NA NA 5.26 NA NA NA NA NA NA 13.33 NA NA 0.00 NA 0.00 0.00 5.88 6.67 NA NA NA 0.00 5.56 0.00 12.50 6.25 NA NA NA NA NA 0.00 0.00 4.76 K intron_retention Pgm,E_chr3L_16119501_16120130 chr3L - chr3L_16119376_16119441 chr3L_16119375_16119376;chr3L_16119441_16119442 chr3L_16119047_16119375;chr3L_16119442_16119500 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.80 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor zip,I_chr2R_20878796_20879147 chr2R - chr2R_20898140_20898992;chr2R_20898140_20898898 chr2R_20898140_20898834 chr2R_20897903_20898139;chr2R_20898993_20898996 33.21 36.67 25.24 25.58 31.43 28.05 32.64 24.75 28.02 33.33 23.68 26.32 28.04 24.24 29.51 29.03 26.67 20.62 23.39 33.33 22.62 54.24 61.36 64.52 59.26 28.05 76.92 39.02 43.88 44.12 22.95 32.89 33.21 27.45 41.18 55.74 44.23 60.00 47.22 39.66 38.96 26.80 23.00 40.74 30.23 32.26 53.85 33.60 25.68 50.00 65.00 51.61 48.00 76.92 26.47 47.83 37.04 29.01 K intron_retention CG7530,I_chr3R_10556352_10557136,eff chr3R - chr3R_10556352_10557198 chr3R_10556351_10556352;chr3R_10557198_10557199 chr3R_10556252_10556351;chr3R_10557199_10557231 100.00 100.00 100.00 100.00 93.75 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 95.83 92.86 NA NA 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 93.33 NA 100.00 NA NA NA 95.65 100.00 100.00 90.00 NA 100.00 100.00 NA 100.00 100.00 NA NA NA 93.75 NA 100.00 NA NA 96.00 K intron_retention CG9330,RI_chr3L_19580216_19580275 chr3L + chr3L_19579570_19579634 chr3L_19579569_19579570;chr3L_19579634_19579635 chr3L_19579359_19579569;chr3L_19579635_19579891 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.56 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Coq2 chr3R - chr3R_4141086_4141143 chr3R_4141085_4141086;chr3R_4141143_4141144 chr3R_4141020_4141085;chr3R_4141144_4141207 25.00 NA NA NA NA NA NA NA 25.00 NA NA 14.29 NA NA NA 71.43 NA NA NA 30.77 NA 43.75 42.86 14.29 NA NA NA NA NA 45.45 NA NA 61.11 14.29 NA 15.38 33.33 NA NA 26.67 NA 30.77 NA 26.67 10.53 20.00 NA 35.71 22.22 25.00 NA NA NA 13.33 25.00 NA 13.33 21.05 K intron_retention Not1,I_chr2R_5463624_5463682 chr2R - chr2R_5455881_5456067 chr2R_5455880_5455881;chr2R_5456067_5456068 chr2R_5455786_5455880;chr2R_5456068_5456427 6.53 NA 0.00 14.29 10.53 0.00 0.00 12.00 9.30 NA 0.00 6.38 10.26 12.50 9.09 14.29 0.00 0.00 12.50 8.16 15.38 0.00 12.50 0.00 NA 0.00 9.09 20.00 NA NA 0.00 NA NA 12.90 NA 6.67 4.35 NA 0.00 5.00 NA 9.09 14.29 0.00 0.00 0.00 0.00 0.00 10.71 4.35 9.38 NA NA NA 15.38 NA 0.00 NA K intron_retention chic,RI_chr2L_5976783_5980950,I_chr2L_5979705_5979818,I_chr2L_5979705_5979941,RI_chr2L_5979705_5979951,I_chr2L_5979705_5979953,I_chr2L_5979705_5980025,I_chr2L_5979705_5980213,I_chr2L_5979705_5980370,I_chr2L_5979705_5980558,I_chr2L_5979705_5980632,I_chr2L_5979705_5980639,RI_chr2L_5979705_5980734 chr2L - chr2L_5979705_5979939 chr2L_5979704_5979705;chr2L_5979939_5979940 chr2L_5979605_5979704;chr2L_5979940_5980475 2.34 2.05 2.87 14.19 2.08 3.25 3.00 3.60 2.01 2.40 3.10 3.39 2.02 2.88 5.91 2.16 2.41 4.65 3.41 3.98 4.35 1.67 2.11 1.91 2.10 3.76 2.10 4.07 3.16 2.30 3.57 1.89 2.56 2.34 1.61 2.76 2.39 1.46 1.85 1.97 2.15 2.77 3.09 2.16 2.59 1.54 1.95 2.09 3.48 1.73 1.85 2.07 1.93 1.45 2.75 2.26 1.89 2.37 K alternative_last_exon vtd,F_chr3LHet_2248642_2276770 chr3LHet + chr3LHet_2255060_2263373 chr3LHet_2255060_2255133 chr3LHet_2263374_2263535 chr3LHet_2255134_2255455 chr3LHet_2254309_2255059 3.23 5.41 2.33 2.08 3.33 0.00 4.94 2.86 3.00 5.56 29.41 3.80 7.50 4.76 2.33 1.39 1.96 3.45 3.23 6.45 12.50 6.67 6.06 2.33 4.55 5.13 2.86 6.67 3.85 7.14 4.23 3.23 7.69 4.55 6.90 0.00 7.14 0.00 5.26 2.78 2.38 2.41 2.17 2.56 2.86 3.23 6.06 3.70 1.08 2.44 6.98 2.78 0.00 3.85 3.23 2.38 2.63 1.69 K alternative_acceptor CG5793,I_chr3R_16953555_16953842 chr3R + chr3R_16953555_16953842 chr3R_16953555_16953676 chr3R_16953466_16953554;chr3R_16953843_16953939 100.00 NA 100.00 100.00 NA 100.00 85.71 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor smi35A,I_chr2L_14197587_14197656,E_chr2L_14222082_14233893,RI_chr2L_14233579_14233647 chr2L - chr2L_14197294_14197656 chr2L_14197294_14197362 chr2L_14196927_14197293;chr2L_14197657_14197756 0.00 0.00 0.00 1.54 0.00 4.35 7.14 2.56 2.60 0.00 6.67 1.96 10.00 3.23 0.00 2.44 3.57 8.70 0.00 3.12 0.00 3.03 1.69 0.00 0.00 0.00 0.00 0.00 4.17 5.00 2.70 0.00 0.00 1.92 0.00 0.00 2.00 0.00 0.00 3.92 0.00 3.70 4.17 3.03 0.00 0.00 0.00 2.86 2.00 4.88 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Pi3K21B,I_chr2L_301774_302025,I_chr2L_301945_302025 chr2L + chr2L_301945_302025;chr2L_299919_302025 chr2L_301774_302025 chr2L_302026_302125;chr2L_299033_299918 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention vkg,I_chr2L_5027222_5028118 chr2L - chr2L_5013612_5013674 chr2L_5013611_5013612;chr2L_5013674_5013675 chr2L_5013497_5013611;chr2L_5013675_5015592 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.29 0.10 0.00 0.25 0.09 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG16971,I_chr3L_225856_225909,I_chr3L_225919_225983,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_225919_226004;chr3L_225919_225983 chr3L_225919_226219 chr3L_225910_225918;chr3L_226220_226256 0.43 0.32 0.84 NA 0.43 0.70 0.25 NA 0.51 0.60 0.00 0.40 1.53 0.65 0.00 0.35 0.71 1.06 0.30 0.44 0.00 0.49 0.57 0.23 0.32 0.63 0.27 0.35 0.77 0.51 0.29 0.00 0.72 1.13 0.00 NA 0.26 0.27 0.17 0.85 0.00 0.27 0.43 0.21 0.65 0.36 0.48 0.48 0.46 0.55 0.00 1.36 0.49 0.78 0.00 NA 0.76 0.42 K intron_retention stmA chr2R - chr2R_4618194_4618253 chr2R_4618193_4618194;chr2R_4618253_4618254 chr2R_4617569_4618193;chr2R_4618254_4619117 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG8552,I_chr2L_8140779_8156516 chr2L - chr2L_8135615_8135673 chr2L_8135618_8135673 chr2L_8135674_8136092;chr2L_8134842_8135614 90.91 95.65 96.43 90.91 93.75 86.36 90.48 98.00 92.73 75.00 86.96 88.24 89.47 95.83 87.50 87.18 95.00 100.00 91.18 94.74 86.36 87.50 100.00 92.00 90.00 91.67 87.10 100.00 100.00 93.94 96.55 92.31 100.00 93.10 84.00 88.00 100.00 88.89 80.95 92.86 87.23 90.74 91.30 90.91 90.91 88.24 85.71 92.16 92.73 89.29 92.50 100.00 88.89 89.47 96.15 79.17 90.32 89.23 K jcn_only_AA CG5704,RI_chr3L_2170709_2170822 chr3L - chr3L_2170693_2170822 chr3L_2170709_2170822 chr3L_2170823_2170922;chr3L_2170609_2170692 2.27 2.17 8.70 1.41 0.00 2.22 0.00 3.39 3.23 NA 0.00 3.57 0.00 0.00 2.27 6.82 3.45 3.45 7.14 2.74 0.00 4.62 4.41 2.04 0.00 5.56 5.71 0.00 7.69 0.00 3.75 0.00 4.76 4.62 1.56 2.17 0.00 0.00 0.00 4.44 7.14 1.61 3.57 1.61 NA 0.00 3.17 3.57 6.41 0.00 4.72 3.77 0.00 1.67 0.00 7.14 2.27 4.76 K intron_retention R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083687_8089184 chr2L_8083686_8083687;chr2L_8089184_8089185 chr2L_8083422_8083686;chr2L_8089185_8089284 100.00 NA NA 100.00 NA NA 91.67 100.00 100.00 NA 90.91 92.31 NA NA NA 93.33 NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA NA 90.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 93.75 100.00 NA NA NA NA NA NA NA NA NA K intron_retention CycA chr3L - chr3L_11821218_11821287 chr3L_11821217_11821218;chr3L_11821287_11821288 chr3L_11820970_11821217;chr3L_11821288_11821492 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 1.62 1.25 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 1.40 0.00 2.13 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CkIalpha,I_chrX_12548371_12549203,I_chrX_12548704_12549203,I_chrX_12548772_12549203 chrX + chrX_12548131_12549203;chrX_12547919_12549203 chrX_12548202_12549203 chrX_12549204_12549210;chrX_12547852_12547918 100.00 100.00 97.56 100.00 96.43 96.77 98.90 98.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 96.15 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 98.08 100.00 100.00 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.73 100.00 100.00 94.44 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA ena chr2R + chr2R_15047541_15047681;chr2R_15047541_15047684;chr2R_15047541_15047753 chr2R_15047541_15047756 chr2R_15047496_15047540;chr2R_15047757_15048407 1.01 0.00 1.25 0.50 1.23 1.70 0.93 1.65 0.33 2.01 1.28 1.57 1.01 0.00 1.35 0.47 1.65 1.21 0.00 1.61 0.83 0.29 1.08 1.01 0.46 0.49 0.71 0.00 0.50 0.55 0.49 0.64 0.60 1.27 0.00 0.39 0.21 0.74 1.18 1.10 0.00 0.63 0.53 1.50 1.66 0.00 0.45 0.00 1.40 1.46 1.53 1.99 2.01 1.18 1.25 1.77 4.55 1.49 N alternative_last_exon CG6701,RI_chr2R_9866896_9867532,noncoding_6685 chr2R - chr2R_9866896_9867532,chr2R_9866924_9867532 chr2R_9867449_9867532 chr2R_9866689_9866895 chr2R_9867114_9867448 chr2R_9867533_9867623 18.07 17.39 18.07 29.03 17.91 26.83 32.28 31.25 26.15 14.29 20.00 26.22 33.71 28.72 24.04 40.13 20.45 23.94 30.48 18.67 20.83 11.58 15.46 11.43 18.33 25.88 20.62 14.49 14.08 10.67 27.52 11.43 13.16 33.14 16.39 16.00 6.42 8.77 6.67 16.67 15.91 22.60 30.00 17.65 6.45 19.23 11.63 14.74 28.65 10.34 17.89 20.41 7.14 17.39 25.20 11.43 20.00 14.81 K intron_retention CG30193,CG30190 chr2R + chr2R_18812899_18813071 chr2R_18812898_18812899;chr2R_18813071_18813072 chr2R_18812672_18812898;chr2R_18813072_18813135 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG1358,I_chr2R_3485171_3489936 chr2R - chr2R_3484895_3484973 chr2R_3484894_3484895;chr2R_3484973_3484974 chr2R_3484770_3484894;chr2R_3484974_3485162 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 2.56 6.45 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 K intron_retention psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6456884_6457578 chr2R_6456883_6456884;chr2R_6457578_6457579 chr2R_6456873_6456883;chr2R_6457579_6457647 100.00 90.00 100.00 93.75 NA 88.89 100.00 92.00 100.00 NA NA 100.00 94.74 100.00 91.67 100.00 100.00 100.00 100.00 100.00 NA NA NA NA NA 90.91 NA NA NA NA 80.00 NA NA 95.65 NA NA NA NA NA NA NA 90.91 100.00 NA NA NA NA NA 96.30 NA 100.00 NA NA NA 100.00 NA NA NA K alternative_donor CG9705,I_chr3L_16773492_16773604,I_chr3L_16773517_16773604,I_chr3L_16774043_16774562 chr3L + chr3L_16773492_16773604;chr3L_16773517_16773604 chr3L_16773521_16773604 chr3L_16773605_16773704;chr3L_16773417_16773491 98.68 97.87 98.36 100.00 97.83 98.08 96.72 96.74 97.58 97.73 93.75 100.00 100.00 100.00 100.00 96.15 100.00 96.00 100.00 100.00 100.00 97.18 100.00 97.92 96.97 96.23 97.87 97.44 97.87 100.00 98.73 100.00 98.31 97.65 100.00 98.04 100.00 96.88 100.00 98.08 98.68 98.94 100.00 100.00 98.75 100.00 100.00 98.33 99.01 100.00 98.08 100.00 100.00 100.00 98.28 100.00 97.50 97.50 K jcn_only_AA CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_245062_246387 chr4_245066_246387 chr4_246388_246398;chr4_244571_245061 96.73 97.30 97.14 98.41 100.00 96.55 95.24 96.05 97.85 NA NA 96.08 100.00 100.00 96.88 98.11 96.15 95.24 100.00 96.59 NA 95.65 97.14 96.43 NA NA 93.10 NA 100.00 100.00 95.45 NA 95.24 98.36 100.00 100.00 100.00 92.00 86.36 93.48 NA 95.89 NA 97.83 NA 96.15 95.83 90.91 98.75 96.15 100.00 95.83 100.00 NA 97.96 NA 96.15 NA K alternative_donor Ca-P60A,RI_chr2R_19820338_19820541,I_chr2R_19820338_19821424,CEI_chr2R_19820338_19821830,I_chr2R_19820338_19823289 chr2R - chr2R_19820338_19820817;chr2R_19820338_19820955;chr2R_19820338_19820765 chr2R_19820338_19820781 chr2R_19820238_19820337;chr2R_19820956_19820969 89.26 89.36 89.93 87.96 92.13 86.87 87.74 88.50 91.35 87.91 91.84 90.04 84.51 90.84 91.95 87.50 91.00 89.91 89.66 90.00 89.81 84.76 85.00 91.89 91.57 89.22 80.70 82.89 83.51 89.68 92.96 85.96 88.46 88.43 85.54 89.66 89.26 85.94 90.57 89.22 92.11 89.33 91.43 91.41 89.23 87.76 89.74 87.79 87.44 88.52 87.10 83.33 89.86 91.67 87.65 89.06 90.41 92.44 K intron_retention Vha26,I_chr3R_1417553_1417709,I_chr3R_1417761_1418260,I_chr3R_1417761_1418275,I_chr3R_1418045_1418289 chr3R + chr3R_1417761_1418289 chr3R_1417760_1417761;chr3R_1418289_1418290 chr3R_1417710_1417760;chr3R_1418290_1418360 0.17 0.41 0.56 0.00 0.00 0.00 0.49 0.16 0.33 0.00 0.46 0.51 0.86 0.00 0.00 0.52 0.00 0.00 0.29 0.24 0.71 1.01 0.88 0.00 1.11 0.61 0.75 1.40 1.61 0.00 0.45 0.61 0.00 0.17 0.00 2.29 0.00 0.00 0.00 0.42 1.30 0.54 0.00 0.00 1.08 0.00 0.00 0.84 0.15 0.00 0.35 1.35 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1646,I_chr3R_24640561_24640869,I_chr3R_24641816_24641874 chr3R + chr3R_24641816_24641874 chr3R_24641815_24641816;chr3R_24641874_24641875 chr3R_24641716_24641815;chr3R_24641875_24641974 93.75 91.11 90.62 99.15 96.15 95.65 93.65 96.70 93.07 100.00 91.11 93.46 97.30 90.24 97.14 98.70 93.18 88.89 91.94 95.76 90.70 98.59 86.21 95.00 93.18 98.48 95.18 93.75 97.06 86.00 89.01 100.00 98.21 94.68 94.12 97.87 94.55 89.47 95.24 93.26 93.75 95.76 97.62 90.16 90.91 95.77 88.71 93.85 93.75 93.44 91.86 91.84 84.78 91.84 96.83 91.07 94.12 89.41 K jcn_only_AD stck,I_chr3R_4184313_4184380,I_chr3R_4184660_4184730 chr3R + chr3R_4184660_4184730 chr3R_4184677_4184730 chr3R_4184731_4184799;chr3R_4184594_4184659 100.00 98.71 100.00 100.00 100.00 99.24 100.00 100.00 99.13 100.00 100.00 99.55 100.00 100.00 100.00 100.00 98.61 100.00 100.00 99.61 100.00 100.00 99.17 99.47 100.00 97.90 99.00 99.05 99.33 100.00 100.00 99.02 100.00 100.00 100.00 99.31 100.00 100.00 100.00 100.00 99.19 100.00 100.00 100.00 99.39 100.00 100.00 100.00 99.55 100.00 100.00 99.17 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG5498,CG33969 chr3L - chr3L_20376601_20376652 chr3L_20376600_20376601;chr3L_20376652_20376653 chr3L_20376381_20376600;chr3L_20376653_20377206 0.00 0.00 0.00 0.00 NA NA 7.41 0.00 5.88 NA NA 0.00 4.76 NA 5.88 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA NA 0.00 0.00 0.00 2.56 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 5.26 NA NA NA 5.26 0.00 0.00 NA K intron_retention cic chr3R + chr3R_16126135_16126356 chr3R_16126134_16126135;chr3R_16126356_16126357 chr3R_16125939_16126134;chr3R_16126357_16126761 53.85 47.37 55.17 62.12 55.17 62.96 52.08 51.92 61.80 65.00 60.00 55.26 69.23 52.78 50.00 61.70 41.38 56.41 56.00 53.28 70.83 37.04 42.86 53.19 51.52 54.55 65.79 55.56 48.44 52.94 47.06 50.00 66.67 50.88 53.85 78.95 48.94 42.86 47.62 50.91 58.82 56.00 62.50 33.87 71.43 48.65 50.00 59.42 46.48 58.62 47.73 48.57 43.75 37.50 61.90 60.87 57.89 78.95 K jcn_only_AD PhKgamma,I_chrX_11589428_11589856,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11589297_11589856;chrX_11589418_11589856;chrX_11589428_11589856 chrX_11589313_11589856 chrX_11589857_11589956;chrX_11589195_11589296 81.82 77.27 80.95 85.19 NA NA NA 71.43 79.31 NA NA 67.74 NA NA 76.00 95.24 NA NA NA 90.32 NA 81.25 85.19 88.00 NA 80.95 NA NA 95.65 NA 81.48 NA NA 66.67 NA NA 65.00 88.46 82.61 84.62 NA 81.82 NA 83.78 85.00 NA NA 85.00 83.33 88.00 78.95 68.18 NA NA 69.57 NA 80.95 86.67 K intron_retention CG9281,I_chrX_15603016_15603802,I_chrX_15603016_15604180 chrX - chrX_15603016_15604338 chrX_15603015_15603016;chrX_15604338_15604339 chrX_15602916_15603015;chrX_15604339_15604821 0.62 0.21 0.86 0.72 0.46 0.56 0.78 0.00 0.61 0.00 0.00 0.50 0.82 0.34 0.23 0.30 0.00 0.53 0.55 0.43 0.00 1.25 0.62 0.60 0.99 0.64 1.37 0.93 5.21 1.26 0.00 1.47 0.66 0.60 1.77 0.80 0.66 0.69 0.35 1.01 0.00 0.41 0.69 0.53 1.03 0.46 0.00 0.00 0.63 0.31 1.04 0.68 0.71 0.73 0.26 0.63 1.12 1.27 K jcn_only_AA CG11006,F_chr3L_12799159_12799339 chr3L + chr3L_12804689_12804777;chr3L_12804689_12804747 chr3L_12804689_12804774 chr3L_12803828_12804688;chr3L_12804778_12804986 2.94 0.00 2.13 0.00 5.00 9.38 10.53 1.85 2.67 0.00 9.38 9.33 2.17 0.00 2.63 4.44 0.00 8.00 7.89 5.48 0.00 2.82 8.89 0.00 3.12 0.00 0.00 2.50 6.12 3.39 13.51 3.77 3.33 2.00 0.00 5.56 7.50 2.94 2.94 3.95 6.52 1.47 3.03 6.00 1.56 6.67 8.70 0.00 1.35 5.00 3.92 0.00 0.00 15.15 10.42 2.13 0.00 2.08 K alternative_donor exba,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1425813_1426009;chr3R_1425813_1426125 chr3R_1425813_1426209 chr3R_1425790_1425812;chr3R_1426210_1426225 0.00 NA 8.33 NA NA NA 0.00 0.00 3.33 0.00 0.00 4.35 0.00 0.00 NA 6.25 NA 0.00 0.00 4.17 14.29 0.00 0.00 0.00 NA 0.00 NA 14.29 9.09 16.67 6.25 7.69 0.00 0.00 0.00 0.00 0.00 0.00 NA 5.26 NA 0.00 0.00 0.00 5.00 4.76 0.00 4.17 0.00 9.09 NA 10.00 20.00 NA NA 0.00 NA 0.00 K alternative_donor sqh,I_chrX_6118043_6119039,I_chrX_6118150_6118725,I_chrX_6118150_6118729,I_chrX_6118150_6118790,I_chrX_6118150_6118800 chrX - chrX_6118150_6119035;chrX_6118150_6118725;chrX_6118150_6119039;chrX_6118150_6118949 chrX_6118150_6118729 chrX_6118050_6118149;chrX_6119040_6119139 0.00 0.00 0.00 0.20 0.00 0.00 0.20 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.40 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 K alternative_acceptor MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17399683_17403392;chr2R_17399683_17403481;chr2R_17399683_17401733 chr2R_17399683_17401713 chr2R_17399598_17399682;chr2R_17403482_17403550 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG3287,I_chr2R_2698891_2699406,I_chr2R_2700203_2700285 chr2R + chr2R_2698681_2699406;chr2R_2698891_2699406;chr2R_2698654_2699406 chr2R_2699349_2699406 chr2R_2699407_2699506;chr2R_2698533_2698653 3.57 4.55 2.50 1.67 3.70 2.22 4.17 1.41 4.17 3.70 0.00 3.33 2.94 2.13 1.69 2.67 0.00 2.70 1.82 2.08 2.78 8.70 3.75 5.17 10.34 2.33 7.55 7.14 8.77 3.64 1.92 5.41 6.15 3.08 1.59 3.51 10.81 2.70 5.88 5.15 5.13 3.95 3.45 6.67 4.76 2.74 4.08 4.27 2.53 4.76 4.62 5.13 2.70 2.56 1.82 2.70 3.57 4.00 K jcn_only_AA nrv1 chr2L - chr2L_6779646_6779711 chr2L_6779652_6779711 chr2L_6779712_6779804;chr2L_6779585_6779645 99.73 99.35 100.00 99.67 99.38 99.68 99.25 100.00 99.70 100.00 100.00 100.00 99.46 100.00 100.00 100.00 100.00 100.00 100.00 99.87 98.80 99.71 99.43 100.00 100.00 99.37 99.29 99.60 99.55 99.41 99.75 99.52 99.83 99.44 100.00 99.68 99.82 98.87 99.73 100.00 99.58 100.00 100.00 99.73 99.21 99.83 99.64 99.73 99.85 99.26 98.91 98.62 99.62 100.00 99.76 100.00 99.68 99.65 K jcn_only_AA CG7203,I_chr2L_7795654_7795717,Herp chr2L - chr2L_7798615_7799308 chr2L_7798624_7799308 chr2L_7799309_7799846;chr2L_7798163_7798614 100.00 100.00 100.00 100.00 97.37 100.00 98.70 100.00 98.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 98.33 100.00 98.70 100.00 97.62 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.81 100.00 97.83 100.00 90.91 98.84 100.00 100.00 100.00 100.00 98.00 100.00 100.00 100.00 97.92 97.14 100.00 100.00 98.18 100.00 100.00 100.00 K intron_retention CG31216 chr3R + chr3R_15514088_15522273 chr3R_15514087_15514088;chr3R_15522273_15522274 chr3R_15513901_15514087;chr3R_15522274_15522378 3.85 2.86 8.33 11.76 8.00 5.56 11.90 7.04 6.38 6.90 2.94 6.49 3.85 5.77 3.39 4.29 0.00 3.45 3.57 4.35 6.25 0.00 8.89 0.00 0.00 5.26 6.45 3.70 5.88 3.70 1.52 0.00 0.00 7.69 10.71 5.13 0.00 0.00 0.00 3.17 1.61 9.30 0.00 5.17 6.25 2.68 0.00 2.80 5.49 0.00 0.00 8.33 3.85 0.00 4.76 0.00 12.77 0.62 K multi_cassette Nipped-B,I_chr2R_580301_580515,I_chr2R_580453_580515,I_chr2R_580989_582555,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_580301_582623 chr2R_580301_580515;chr2R_580674_580752;chr2R_580989_582623 chr2R_580516_580673;chr2R_580753_580988 chr2R_580236_580300;chr2R_582624_582655 100.00 100.00 100.00 94.12 87.50 90.00 97.44 96.55 97.37 100.00 100.00 96.43 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 95.24 100.00 75.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 95.45 92.31 90.91 85.71 100.00 100.00 100.00 100.00 K jcn_only_AA CG5703 chrX + chrX_17526494_17526622 chrX_17526494_17526601 chrX_17526344_17526493;chrX_17526623_17527141 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD VhaPPA1-1,I_chr3R_10728476_10728933,RI_chr3R_10728613_10728929,I_chr3R_10728645_10728933 chr3R - chr3R_10728613_10728933 chr3R_10728613_10728929 chr3R_10728545_10728612;chr3R_10728934_10729029 0.34 0.84 0.00 0.44 0.25 0.21 0.17 0.13 0.48 0.00 0.22 0.42 0.27 0.52 4.78 0.18 0.00 0.39 0.00 0.29 0.21 0.34 0.50 0.65 0.48 0.00 0.72 0.50 0.79 0.91 0.43 0.00 0.63 0.27 0.76 0.27 0.31 0.00 0.36 0.13 0.16 0.10 0.25 0.00 0.23 0.32 0.61 0.41 0.58 0.50 0.00 0.34 0.43 0.86 0.53 0.36 0.64 0.00 K intron_retention CG32425,I_chr3L_20490581_20505036,I_chr3L_20502617_20503129,I_chr3L_20504930_20505036 chr3L + chr3L_20503061_20503129 chr3L_20503060_20503061;chr3L_20503129_20503130 chr3L_20503041_20503060;chr3L_20503130_20503229 19.64 NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA 0.00 K intron_retention CG3632,RI_chrX_16195880_16196242 chrX + chrX_16195951_16196242 chrX_16195950_16195951;chrX_16196242_16196243 chrX_16195846_16195950;chrX_16196243_16196325 4.00 2.63 0.00 11.11 8.00 2.78 7.02 6.90 5.06 16.67 0.00 3.39 2.56 14.29 2.78 10.71 0.00 6.45 7.89 4.82 4.00 4.17 5.80 4.17 0.00 9.09 1.56 0.00 5.00 3.45 3.92 12.90 3.45 6.35 7.32 3.57 1.64 4.65 0.00 4.48 9.68 3.70 13.79 0.00 4.65 1.61 0.00 8.82 8.57 1.59 1.72 0.00 0.00 3.85 8.00 0.00 0.00 4.17 K intron_retention bin3,EI_chr2R_2108782_2120760,tomboy40 chr2R + chr2R_2108782_2120770 chr2R_2108781_2108782;chr2R_2120770_2120771 chr2R_2108682_2108781;chr2R_2120771_2120860 0.00 NA NA 2.70 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 2.38 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K alternative_donor CG31313,REI_chr3R_10392729_10393060,I_chr3R_10394322_10394381,RI_chr3R_10400799_10401492 chr3R - chr3R_10392729_10392886 chr3R_10392729_10392875 chr3R_10392629_10392728;chr3R_10392887_10392898 5.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.56 NA K intron_retention Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_150069_150205 chr4_150068_150069;chr4_150205_150206 chr4_149969_150068;chr4_150206_150232 71.43 NA NA NA NA NA 71.43 NA 71.43 NA NA 87.50 NA NA NA 70.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG1646,RI_chr3R_24638209_24638280,I_chr3R_24640561_24640869,I_chr3R_24641816_24641874 chr3R + chr3R_24639729_24640869 chr3R_24639728_24639729;chr3R_24640869_24640870 chr3R_24639603_24639728;chr3R_24640870_24640969 8.11 8.97 7.14 9.29 4.63 4.12 10.77 13.29 10.55 8.54 4.72 8.79 11.84 9.57 10.08 10.79 5.49 6.73 9.26 8.06 6.45 7.00 19.61 6.49 11.40 3.70 6.69 3.92 7.52 5.04 8.22 9.71 5.56 10.06 5.88 5.88 5.26 6.86 5.26 12.50 9.09 8.20 11.39 7.11 7.87 9.70 2.65 7.69 10.75 8.40 7.39 6.96 7.62 12.12 11.36 8.11 9.40 11.11 K jcn_only_AA LIMK1,I_chrX_12488942_12489000 chrX - chrX_12483201_12483873 chrX_12483355_12483873 chrX_12483874_12484517 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1444,CG1514,Ykt6 chrX + chrX_7803958_7804741 chrX_7803957_7803958;chrX_7804741_7804742 chrX_7803911_7803957;chrX_7804742_7804817 0.00 0.00 0.57 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.56 0.37 0.00 0.64 1.11 0.00 0.00 0.00 0.00 0.43 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 2.68 1.06 0.55 0.00 0.40 0.00 0.00 0.00 0.73 0.00 0.38 0.76 0.61 0.00 2.10 0.00 0.00 0.40 0.61 1.09 0.34 1.54 0.51 0.00 0.62 0.00 0.52 0.58 0.00 0.71 K intron_retention ETH,Orc4 chr2R - chr2R_20682738_20682795 chr2R_20682737_20682738;chr2R_20682795_20682796 chr2R_20682318_20682737;chr2R_20682796_20683197 50.00 60.00 NA 18.18 NA NA 88.89 61.54 52.63 NA 80.00 33.33 NA NA 50.00 36.00 NA NA NA 50.00 NA 36.84 NA NA NA NA NA NA NA NA 75.00 NA NA 52.63 NA NA 60.00 NA NA NA NA 43.75 NA NA NA 50.00 NA NA 61.54 36.84 46.15 NA 28.57 60.00 NA 45.45 NA 25.00 K intron_retention CkIIbeta,I_chrX_11689220_11690898 chrX + chrX_11689220_11689764 chrX_11689219_11689220;chrX_11689764_11689765 chrX_11689138_11689219;chrX_11689765_11689768 90.24 84.85 80.00 90.38 76.47 95.65 91.84 90.14 84.81 86.36 85.71 83.33 89.47 90.24 82.14 94.79 96.15 93.33 88.37 81.93 94.44 95.65 93.33 91.30 83.33 92.00 81.48 78.95 98.28 95.24 84.21 93.75 94.55 93.75 87.80 95.83 75.00 90.00 77.78 95.79 98.04 86.67 88.24 86.21 95.16 95.14 95.12 97.91 91.11 73.91 86.49 80.00 92.31 90.70 82.35 82.14 90.91 96.37 K jcn_only_AA CG15609,I_chr2R_12897700_12897767,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12897679_12897767 chr2R_12897700_12897767 chr2R_12897768_12897834;chr2R_12897600_12897678 2.82 4.72 1.85 4.39 3.33 5.32 1.60 2.33 1.69 1.47 1.09 3.57 1.35 2.53 2.50 7.37 2.20 3.12 1.18 1.79 3.03 2.36 4.04 2.00 4.08 3.49 4.11 5.88 2.44 2.61 2.65 0.00 2.82 3.65 2.11 3.51 5.56 4.14 2.75 6.21 3.77 3.11 2.74 1.52 1.65 3.40 2.61 2.88 4.02 2.00 5.23 3.57 5.36 4.88 0.90 2.24 0.85 7.21 K alternative_donor CG3321,RI_chr3R_10154615_10155360 chr3R + chr3R_10152850_10152974;chr3R_10152811_10152974;chr3R_10152906_10152974 chr3R_10152911_10152974 chr3R_10152975_10153473;chr3R_10152803_10152810 0.00 0.00 0.00 2.29 0.00 0.00 2.08 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 5.26 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 1.37 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 K jcn_only_AA Lsd-1,CG10375 chr3R + chr3R_19590407_19590470 chr3R_19590407_19590449 chr3R_19590108_19590406;chr3R_19590471_19590681 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N intron_retention Aldolase,I_chr3R_22083764_22086684 chr3R - chr3R_22082030_22082575 chr3R_22082029_22082030;chr3R_22082575_22082576 chr3R_22081992_22082029 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 70.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 K jcn_only_AA I_chr3L_834336_834491,CG13887,Gr61a chr3L + chr3L_838625_839249 chr3L_838625_839102 chr3L_838049_838624;chr3L_839250_839740 0.64 0.92 0.52 0.40 0.36 0.33 0.54 1.12 0.23 0.44 0.64 0.67 1.10 0.21 0.64 0.54 0.40 0.00 1.39 0.26 0.52 3.35 0.93 0.67 0.58 0.41 0.30 0.47 2.14 0.88 0.51 0.83 0.85 0.36 0.95 2.05 0.42 0.00 0.68 0.95 0.33 0.30 0.66 0.94 0.71 0.67 0.13 0.50 0.90 0.64 0.85 1.39 0.34 1.29 1.01 0.75 0.09 0.08 K intron_retention CG3402 chr3L - chr3L_652573_652710 chr3L_652572_652573;chr3L_652710_652711 chr3L_652444_652572;chr3L_652711_652916 4.55 2.92 3.85 6.00 6.67 5.97 7.89 7.48 8.19 6.06 8.57 4.90 9.64 7.78 6.38 10.27 9.23 5.00 5.71 5.98 3.49 4.61 3.20 3.51 3.12 6.56 5.20 7.87 2.23 2.76 5.80 2.06 2.17 6.71 2.96 3.91 2.03 1.07 2.49 1.98 5.62 6.83 7.41 3.39 1.57 1.89 4.11 2.73 6.10 3.95 3.27 4.55 2.70 0.00 5.52 3.69 1.52 0.81 N mutually_exclusive lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,RI_chr2L_22823579_22823640,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22818652_22831505,chr2L_22831547_22831603 chr2L_22818652_22820169,chr2L_22820498_22831603 chr2L_22831506_22831546 chr2L_22820170_22820497 chr2L_22818298_22818651;chr2L_22831604_22831632 94.41 NA NA NA NA NA 97.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 91.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor klett chrX - chrX_21497918_21501000 chrX_21497918_21499387 chrX_21497340_21497917;chrX_21501001_21501058 96.77 100.00 100.00 89.29 100.00 94.44 100.00 96.30 100.00 100.00 100.00 95.00 94.74 100.00 100.00 95.24 100.00 88.24 100.00 97.83 100.00 88.89 97.50 100.00 100.00 100.00 100.00 95.83 90.91 96.88 85.71 92.31 90.48 96.77 95.45 96.30 97.56 95.83 97.06 95.00 93.33 95.24 93.33 94.44 95.65 100.00 96.77 86.36 100.00 96.67 97.30 100.00 100.00 87.50 95.24 100.00 100.00 94.74 K cassette l(1)G0196,I_chrX_21900456_21904601 chrX + chrX_21900456_21905204 chrX_21900456_21904471;chrX_21904706_21905204 chrX_21904472_21904705 chrX_21900356_21900455;chrX_21905205_21905576 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA X11L,I_chrX_17497609_17497728,RE_chrX_17497873_17498103 chrX + chrX_17497505_17497746 chrX_17497505_17497728 chrX_17497189_17497504;chrX_17497747_17497828 97.96 98.18 98.18 87.64 100.00 100.00 96.34 96.74 96.69 96.15 100.00 96.43 97.96 100.00 96.30 95.95 96.55 98.08 98.33 98.86 96.55 88.24 100.00 100.00 94.44 100.00 100.00 100.00 72.41 97.44 95.31 100.00 95.12 96.34 90.91 89.74 96.15 98.36 100.00 98.75 91.67 98.36 100.00 100.00 95.00 97.44 94.44 NA 98.84 95.38 97.67 95.92 100.00 100.00 100.00 100.00 100.00 NA K alternative_donor Fur2,RI_chrX_16267905_16268958,I_chrX_16270205_16270272,I_chrX_16274795_16274867 chrX + chrX_16270374_16270685 chrX_16270383_16270685 chrX_16270686_16270820;chrX_16270273_16270373 13.58 13.11 18.37 14.71 15.52 7.84 12.28 13.79 13.99 20.00 20.83 12.79 8.00 15.38 18.33 13.56 18.00 12.24 19.57 11.76 20.00 8.33 12.90 17.11 15.15 19.23 18.09 12.24 7.69 12.90 21.43 22.73 15.09 14.94 11.43 12.50 13.58 11.11 12.31 8.11 20.00 12.00 13.95 11.90 22.22 21.88 7.89 8.00 13.08 15.00 13.89 8.57 11.11 18.18 7.69 12.12 18.42 11.54 K alternative_acceptor F_chr3RHet_1879085_1900358,Alg-2 chr3RHet - chr3RHet_1898930_1898983;chr3RHet_1898895_1898983;chr3RHet_1898919_1898983 chr3RHet_1898928_1898983 chr3RHet_1898984_1899090;chr3RHet_1898558_1898894 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Zyx102EF,I_chr4_1079131_1079731,I_chr4_1079131_1080044,I_chr4_1079946_1080044,RI_chr4_1079959_1080044,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1079131_1080044 chr4_1079131_1079726;chr4_1079978_1080044 chr4_1079727_1079977 chr4_1079031_1079130;chr4_1080045_1080072 100.00 96.88 93.94 93.94 100.00 100.00 98.63 96.77 95.71 100.00 95.24 94.83 84.38 100.00 100.00 100.00 96.77 96.30 100.00 96.55 95.24 100.00 96.00 100.00 100.00 100.00 96.67 100.00 93.33 100.00 100.00 92.86 100.00 98.25 100.00 96.00 100.00 100.00 100.00 100.00 100.00 96.61 96.88 100.00 93.75 96.15 100.00 100.00 100.00 100.00 96.97 95.24 100.00 100.00 94.29 95.24 100.00 96.00 K alternative_donor Cht2,I_chr3L_1754361_1754605,I_chr3L_1754361_1754860 chr3L - chr3L_1754361_1755586;chr3L_1754361_1754605 chr3L_1754361_1754860 chr3L_1754261_1754360;chr3L_1755587_1755934 11.11 28.57 12.50 0.00 11.11 20.00 33.33 0.00 9.52 0.00 0.00 5.88 0.00 10.00 6.25 22.22 0.00 0.00 10.00 14.29 20.00 NA NA NA NA 9.09 NA NA 0.00 NA 20.00 NA NA 14.29 NA NA NA NA 25.00 28.57 NA 10.00 20.00 NA 14.29 NA 50.00 0.00 9.09 NA 20.00 NA NA NA 20.00 NA 12.50 NA K intron_retention CG7757 chr3L + chr3L_19903533_19903601 chr3L_19903532_19903533;chr3L_19903601_19903602 chr3L_19903403_19903532;chr3L_19903602_19904619 94.72 77.78 100.00 96.55 100.00 100.00 100.00 100.00 100.00 NA 90.91 97.50 86.67 100.00 100.00 97.37 100.00 94.44 100.00 96.67 90.00 71.43 95.45 95.24 100.00 100.00 100.00 100.00 83.33 90.91 80.00 77.78 92.86 96.88 92.86 90.00 92.86 90.91 91.67 91.30 NA 96.15 100.00 91.67 NA 93.33 88.89 100.00 95.45 91.67 86.67 84.62 90.91 85.71 95.00 82.35 94.12 100.00 K alternative_acceptor CG4630,RI_chr2R_9103472_9103634,I_chr2R_9103765_9103852,I_chr2R_9103910_9104108,I_chr2R_9103956_9104108,RI_chr2R_9104206_9104265 chr2R - chr2R_9104203_9104265 chr2R_9104206_9104265 chr2R_9104266_9104365;chr2R_9104109_9104202 11.17 NA NA NA NA NA 12.00 7.14 9.68 12.50 NA 8.33 NA NA NA NA NA NA NA 2.86 NA 11.76 13.89 7.32 17.65 NA 10.71 NA 10.53 10.00 30.77 NA 16.67 30.77 16.67 12.00 11.63 NA 6.82 13.33 NA 3.45 NA 14.29 4.17 8.33 7.14 NA NA 16.00 NA 25.00 NA 10.53 NA NA 10.53 NA K intron_retention Ac78C,F_chr3L_21141024_21153737 chr3L - chr3L_21130604_21130665 chr3L_21130603_21130604;chr3L_21130665_21130666 chr3L_21130458_21130603;chr3L_21130666_21130894 1.92 1.72 0.00 10.61 10.00 2.44 7.02 4.69 6.03 0.00 0.00 4.60 0.00 2.70 6.52 4.65 0.00 0.00 2.94 1.12 0.00 9.43 0.00 2.74 0.00 0.00 6.78 3.03 12.50 1.59 1.92 4.44 1.89 6.45 4.17 5.41 4.48 6.00 0.00 1.90 1.79 4.69 0.00 0.00 3.28 0.00 0.00 4.11 5.62 0.00 8.75 0.00 0.00 1.85 4.17 1.54 0.00 0.00 K intron_retention meso18E,I_chrX_19601491_19601568 chrX - chrX_19601638_19602184 chrX_19601637_19601638;chrX_19602184_19602185 chrX_19601569_19601637;chrX_19602185_19603182 2.11 1.27 0.00 2.78 0.00 0.00 8.18 0.00 3.29 0.00 3.57 0.00 0.00 0.00 0.00 1.30 1.82 1.59 0.00 2.01 0.00 8.38 3.52 3.70 8.57 0.00 5.08 5.38 5.21 1.89 1.22 1.47 2.78 0.91 2.27 5.63 5.88 3.61 3.81 1.09 4.48 1.49 0.00 2.59 2.15 1.64 2.30 0.00 2.27 3.96 7.75 3.12 0.00 3.80 0.00 4.76 2.11 2.15 K intron_retention CG15438,CG15439,CG15440 chr2L - chr2L_4447852_4447905 chr2L_4447851_4447852;chr2L_4447905_4447906 chr2L_4446662_4447851;chr2L_4447906_4448293 0.00 3.51 0.00 3.85 0.00 0.00 1.47 0.00 1.83 0.00 0.00 0.00 2.56 0.00 3.12 15.91 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 4.88 2.13 3.12 3.85 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 1.67 0.00 2.08 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 1.52 2.27 0.00 3.33 0.00 0.00 0.00 0.00 K jcn_only_AD MEP-1,CG42245,noncoding_10195,CG1143 chr3L + chr3L_2631917_2633537 chr3L_2632122_2633537 chr3L_2633538_2633809;chr3L_2631720_2631916 100.00 100.00 100.00 89.66 100.00 100.00 97.01 100.00 100.00 100.00 100.00 98.21 100.00 100.00 95.56 100.00 100.00 100.00 97.67 98.68 100.00 100.00 100.00 97.22 NA 100.00 96.30 100.00 97.56 100.00 97.62 NA 100.00 98.04 100.00 100.00 97.96 100.00 100.00 100.00 100.00 98.36 97.14 100.00 100.00 100.00 100.00 98.77 100.00 96.88 97.73 100.00 100.00 100.00 95.65 100.00 100.00 100.00 K jcn_only_AA cni,RI_chr2L_16309575_16309999,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16310624_16310690;chr2L_16310637_16310690 chr2L_16310641_16310690 chr2L_16310691_16310700;chr2L_16310441_16310623 16.00 20.00 17.65 19.23 12.50 15.79 7.94 14.74 15.85 NA 12.12 20.31 20.00 22.22 20.37 15.07 18.18 10.81 17.74 11.76 19.23 NA 14.29 13.51 26.92 4.55 20.00 NA NA NA 9.76 NA NA 14.12 NA NA 17.86 NA 19.44 NA NA 28.57 10.87 NA NA 9.52 15.00 NA 16.00 29.03 29.03 26.09 NA NA 18.64 14.71 12.12 NA N jcn_only_AA CG13900,I_chr3L_830745_830907 chr3L - chr3L_830745_830907;chr3L_830715_830907;chr3L_830814_830907 chr3L_830729_830907 chr3L_830908_831007;chr3L_830702_830714 98.85 98.68 97.08 96.97 98.86 100.00 98.95 99.53 99.21 75.76 97.09 98.05 98.97 99.03 99.29 98.85 96.30 98.06 99.29 98.81 98.10 98.08 99.21 98.18 97.56 95.92 100.00 75.00 100.00 100.00 98.40 98.77 100.00 98.62 100.00 100.00 98.87 99.09 99.43 99.26 100.00 98.70 100.00 98.67 97.67 95.16 100.00 98.85 99.44 97.94 99.31 98.44 100.00 94.74 98.66 97.80 98.81 98.89 K intron_retention row chr2R - chr2R_11095305_11097316 chr2R_11095304_11095305;chr2R_11097316_11097317 chr2R_11094023_11095304;chr2R_11097317_11097684 0.00 1.47 0.00 1.11 0.00 0.00 4.35 0.00 0.00 0.00 0.00 2.25 4.65 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 2.27 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 2.33 2.00 0.00 1.04 0.00 0.00 1.94 0.00 1.52 0.00 0.00 0.00 0.00 1.56 0.00 1.69 0.00 1.87 4.44 0.00 2.08 1.56 1.52 0.00 0.00 K cassette dos,I_chr3L_2589746_2592161 chr3L + chr3L_2589553_2592161 chr3L_2589553_2590201;chr3L_2591614_2592161 chr3L_2590202_2591613 chr3L_2589415_2589552;chr3L_2592162_2592261 1.45 1.23 1.52 4.00 2.27 1.05 1.64 2.22 3.16 0.00 1.72 1.54 2.13 1.72 1.32 3.61 2.27 1.41 2.00 1.57 1.75 3.05 1.11 0.72 2.47 1.85 2.16 4.26 1.22 0.92 2.35 0.00 0.98 2.04 1.72 0.83 1.01 0.62 0.60 2.04 1.15 2.26 2.63 0.74 1.01 0.72 1.09 0.61 2.13 1.32 1.19 1.02 0.00 0.00 2.53 0.93 1.45 0.69 K intron_retention CG14408,I_chrX_14725709_14725773 chrX - chrX_14725544_14725636 chrX_14725543_14725544;chrX_14725636_14725637 chrX_14725125_14725543;chrX_14725637_14725699 0.00 0.00 0.00 0.00 0.00 NA 4.76 0.00 2.56 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA 2.63 0.00 3.12 2.78 0.00 NA 0.00 2.94 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 K jcn_only_AA shep,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5156232_5156444 chr3L_5156250_5156444 chr3L_5156445_5156803;chr3L_5156067_5156231 92.99 94.48 93.45 91.24 95.48 89.39 91.52 95.22 92.98 90.65 92.57 95.32 93.88 93.71 92.04 92.99 94.35 94.51 96.03 93.02 98.82 94.65 90.99 93.21 91.60 91.19 93.41 90.00 91.24 92.55 95.20 97.44 91.16 93.08 91.67 95.27 89.67 86.71 91.41 91.76 93.02 92.28 91.67 93.21 97.12 89.83 93.96 96.15 95.12 98.23 93.82 92.71 90.43 92.45 93.30 89.13 92.81 92.09 K alternative_acceptor Ssrp,I_chr2R_19695638_19696332,RI_chr2R_19699261_19699317 chr2R - chr2R_19694621_19694683 chr2R_19694624_19694683 chr2R_19694684_19696255;chr2R_19693854_19694620 92.96 87.50 96.55 90.77 90.62 95.65 96.92 90.14 90.41 95.24 97.14 93.65 96.55 96.67 95.12 91.67 87.50 88.89 90.91 92.21 90.32 92.96 97.67 95.24 100.00 91.67 94.12 90.41 96.74 95.35 90.91 96.43 86.54 93.33 100.00 92.50 92.73 96.30 96.15 91.86 94.85 91.03 97.22 92.86 95.60 90.52 97.44 94.44 91.18 91.67 97.06 92.86 92.11 93.75 97.73 91.84 92.16 92.78 K intron_retention CG17683,I_chr2R_18774_18869 chr2R + chr2R_18748_18826 chr2R_18747_18748;chr2R_18826_18827 chr2R_18711_18747;chr2R_18827_18997 58.36 NA NA 45.45 NA NA 41.67 57.89 56.25 NA NA 58.82 NA 66.67 NA 53.85 NA NA 76.92 60.00 NA NA NA NA NA NA 93.33 NA NA NA 66.67 NA NA 57.89 NA NA NA NA NA NA NA 54.55 81.82 NA NA NA NA NA 52.63 NA NA NA NA NA 70.00 NA NA NA K alternative_acceptor CG17370,RI_chr3R_21707998_21710705,RI_chr3R_21714780_21715376 chr3R + chr3R_21711552_21711616 chr3R_21711552_21711601 chr3R_21711104_21711551;chr3R_21711617_21711742 6.62 4.17 5.56 8.00 6.06 0.00 6.12 10.42 9.80 7.41 8.33 12.50 3.57 11.11 2.38 8.51 6.06 5.88 6.25 4.65 8.33 10.71 7.50 5.13 9.52 5.26 5.71 9.09 4.55 0.00 7.41 15.38 4.17 8.89 7.41 4.76 6.25 10.34 5.00 8.57 7.69 10.42 4.35 7.41 6.25 0.00 NA 14.29 6.98 3.85 7.41 9.09 NA NA 5.71 3.70 5.00 11.11 K cassette Pdp1,RI_chr3L_7809841_7810536,I_chr3L_7813130_7818683,I_chr3L_7831960_7846282 chr3L - chr3L_7811324_7818683;chr3L_7811324_7860340;chr3L_7811324_7846282;chr3L_7811324_7823486 chr3L_7811324_7813087;chr3L_7813130_7823486,chr3L_7813130_7818683,chr3L_7813130_7846282,chr3L_7813130_7860340 chr3L_7813088_7813129 chr3L_7811178_7811323;chr3L_7860341_7860347 2.08 4.88 1.89 3.28 0.00 2.08 0.00 3.45 1.79 0.00 2.33 2.94 2.00 2.04 1.96 1.47 4.65 3.92 3.92 10.00 0.00 1.11 1.85 2.94 0.00 2.33 0.00 0.00 3.12 3.03 3.85 0.00 2.47 1.15 0.00 2.33 0.00 3.12 2.44 0.00 0.00 0.97 2.13 4.35 0.00 2.33 3.23 2.78 3.81 0.00 2.17 0.00 0.00 4.35 1.64 2.78 3.12 0.00 N jcn_only_AD CG33936,snoRNA:Me18S-G1358b,CG33937,RI_chr3R_5183458_5183705 chr3R + chr3R_5183178_5183705;chr3R_5182946_5183705 chr3R_5180806_5183705 chr3R_5183706_5183805 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.81 97.55 100.00 100.00 100.00 97.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.29 100.00 100.00 98.20 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.55 K alternative_donor CG10353,I_chrX_11773365_11773426,I_chrX_11775936_11778830,I_chrX_11778617_11778830,RI_chrX_11780885_11780988 chrX - chrX_11773365_11773430 chrX_11773365_11773426 chrX_11773265_11773364;chrX_11773431_11773524 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.87 0.00 0.00 2.33 2.17 1.69 0.00 0.81 0.00 1.45 0.90 0.00 0.00 0.65 0.00 0.00 0.53 0.00 0.72 0.00 0.00 1.00 0.00 1.30 0.00 0.81 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.91 K jcn_only_AD cyc,RI_chr3L_19810268_19810326 chr3L - chr3L_19807351_19807406 chr3L_19807351_19807402 chr3L_19806916_19807350;chr3L_19807407_19807836 0.00 0.00 0.00 0.00 2.70 NA 0.00 0.00 3.23 NA 0.00 1.89 NA 0.00 0.00 NA 5.00 0.00 0.00 1.47 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 4.00 0.00 0.00 2.00 3.45 NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 1.82 0.00 0.00 0.00 0.00 0.00 K intron_retention Ssdp,RI_chr3R_14022843_14025255 chr3R - chr3R_14025097_14025261 chr3R_14025096_14025097;chr3R_14025261_14025262 chr3R_14024929_14025096;chr3R_14025262_14025317 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA NA K cassette Mgat2,I_chr3R_25845406_25846373 chr3R - chr3R_25842597_25843987 chr3R_25842597_25843346;chr3R_25843707_25843987 chr3R_25843347_25843706 chr3R_25842497_25842596;chr3R_25843988_25844128 19.44 14.29 12.50 14.29 11.54 6.90 8.57 9.52 15.38 40.00 18.52 38.78 15.38 26.32 21.43 22.86 13.64 10.71 9.09 19.44 12.50 20.29 21.43 24.00 24.00 20.00 14.58 25.00 28.57 25.00 16.22 23.08 32.35 21.05 16.67 30.30 21.31 21.21 19.61 22.00 41.67 17.65 18.75 24.14 27.27 21.21 17.07 28.57 14.81 15.15 14.71 17.65 21.05 16.67 8.33 14.81 19.23 20.83 K jcn_only_AD CG31673,RI_chr2L_20830210_20830280 chr2L + chr2L_20830074_20830280 chr2L_20830210_20830280 chr2L_20830281_20830380;chr2L_20829608_20830073 2.23 2.25 2.48 3.20 2.41 2.19 2.73 5.52 1.60 4.81 0.58 1.87 0.00 3.23 2.23 2.22 2.78 4.11 4.05 2.12 4.40 2.70 0.72 3.25 1.53 1.76 0.36 1.69 3.31 1.41 7.73 2.00 1.89 6.25 2.21 2.13 2.02 1.42 1.28 3.30 0.00 2.64 2.24 0.00 1.82 1.67 2.26 1.23 3.90 2.55 1.55 3.94 2.21 3.76 2.54 1.62 3.59 3.48 K intron_retention CG9717,I_chr3R_26410943_26411009 chr3R - chr3R_26410943_26411010 chr3R_26410942_26410943;chr3R_26411010_26411011 chr3R_26410843_26410942;chr3R_26411011_26411109 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 25.00 14.29 NA 0.00 0.00 NA NA 4.00 NA NA NA 0.00 0.00 0.00 NA 2.70 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 5.56 NA NA NA 0.00 NA NA NA K intron_retention CaMKII,I_chr4_1058044_1058101,I_chr4_1058049_1058113,I_chr4_1058049_1058127,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1058049_1058101 chr4_1058048_1058049;chr4_1058101_1058102 chr4_1057949_1058048;chr4_1058102_1058195 0.00 0.00 2.90 1.35 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 1.26 0.00 NA 0.00 1.22 0.00 0.00 3.70 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.61 2.67 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Dscam,I_chr2R_3236481_3238462,CEF_chr2R_3236481_3238678,F_chr2R_3236481_3241070,FI_chr2R_3236481_3242386,I_chr2R_3237222_3249222,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3236481_3249222 chr2R_3236481_3238085;chr2R_3238210_3249222 chr2R_3238086_3238209 chr2R_3236381_3236480;chr2R_3249223_3249322 44.44 NA NA 44.44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention PhKgamma,I_chrX_11590179_11590249,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11589973_11590435 chrX_11589972_11589973;chrX_11590435_11590436 chrX_11589857_11589972;chrX_11590436_11590535 25.00 14.29 NA NA NA NA NA NA 19.05 NA NA NA NA NA NA NA NA NA NA NA NA 41.67 12.50 13.64 NA NA 25.00 31.25 30.77 NA NA NA NA NA NA 46.15 23.53 15.79 25.00 NA NA 20.69 NA 45.45 NA 30.77 NA 40.00 33.33 10.53 14.29 NA NA NA NA NA NA NA K intron_retention Tango4 chrX + chrX_11915312_11915370 chrX_11915311_11915312;chrX_11915370_11915371 chrX_11915136_11915311;chrX_11915371_11916894 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.37 0.00 0.00 0.00 0.00 0.00 3.49 0.00 0.00 0.00 0.00 2.15 1.06 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 1.68 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG9821,I_chr3R_4644986_4645248,I_chr3R_4644986_4645577,I_chr3R_4644986_4645648,I_chr3R_4644986_4646263,RI_chr3R_4644986_4646264,RI_chr3R_4645903_4646033 chr3R - chr3R_4644986_4645577;chr3R_4644986_4646033;chr3R_4644986_4645649 chr3R_4644986_4645248 chr3R_4644886_4644985;chr3R_4646034_4646133 1.45 1.46 1.71 1.60 2.80 1.23 1.47 1.45 1.07 1.49 0.74 1.55 1.20 0.78 1.56 0.68 2.06 0.64 0.76 1.91 0.00 3.88 1.54 0.97 2.30 1.17 3.52 9.80 2.68 2.50 1.27 2.08 0.90 1.22 0.78 1.61 2.17 1.49 1.15 1.95 1.75 1.69 1.04 0.64 0.00 1.10 1.27 1.37 1.22 1.39 1.06 1.08 2.44 2.78 0.85 1.72 1.92 1.39 K intron_retention Tif-IA,RI_chr2L_22250854_22257652 chr2L + chr2L_22253333_22253424 chr2L_22253332_22253333;chr2L_22253424_22253425 chr2L_22253256_22253332;chr2L_22253425_22253685 99.01 98.99 95.56 99.19 96.61 97.14 95.95 97.96 99.50 96.77 100.00 99.43 99.01 96.12 99.05 99.51 99.04 100.00 100.00 99.31 96.61 98.04 98.68 99.12 98.53 98.78 98.85 98.78 96.97 98.41 97.67 100.00 100.00 99.49 100.00 98.81 100.00 100.00 96.74 99.14 100.00 98.83 98.95 100.00 97.30 99.03 98.78 98.15 98.91 98.89 99.36 100.00 100.00 100.00 98.41 100.00 99.15 100.00 K intron_retention Drp1 chr2L - chr2L_2581839_2581897 chr2L_2581838_2581839;chr2L_2581897_2581898 chr2L_2581281_2581838;chr2L_2581898_2582109 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 4.17 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention l(1)1Bi chrX + chrX_524678_524735 chrX_524677_524678;chrX_524735_524736 chrX_524306_524677;chrX_524736_526016 0.00 NA 0.00 NA NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 12.50 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 4.17 NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 0.00 K alternative_acceptor shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9770053_9771599 chr2R_9771216_9771599 chr2R_9771600_9771660;chr2R_9769906_9770052 4.48 3.51 2.82 7.44 3.45 4.48 5.79 7.92 5.69 2.56 4.17 3.74 4.21 6.02 3.75 6.32 7.81 4.29 3.95 5.07 0.00 5.95 4.55 3.17 8.11 1.45 2.63 0.00 7.89 6.52 6.67 NA 3.39 6.56 4.26 1.67 0.70 3.03 1.79 7.58 9.09 5.26 4.48 9.38 12.50 8.33 3.57 5.26 6.84 NA 3.57 5.26 0.00 0.00 4.72 9.09 10.00 0.00 K intron_retention Mob4 chr2R - chr2R_2583771_2583844 chr2R_2583770_2583771;chr2R_2583844_2583845 chr2R_2583397_2583770;chr2R_2583845_2584125 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.47 0.00 0.67 0.00 0.00 0.00 10.00 2.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Nedd4,I_chr3L_17534504_17535990,I_chr3L_17535485_17536604,I_chr3L_17536813_17536863 chr3L + chr3L_17535913_17536604;chr3L_17534504_17536604 chr3L_17535913_17535990,chr3L_17534504_17535990;chr3L_17536063_17536604 chr3L_17535991_17536062 chr3L_17534419_17534503;chr3L_17536605_17536704 2.40 2.30 2.78 0.49 0.00 2.27 3.94 1.20 2.47 6.60 1.33 3.33 0.00 1.22 1.06 3.38 2.78 2.25 0.00 5.11 1.23 5.88 1.56 3.23 1.12 1.15 2.94 3.85 2.21 2.40 1.85 5.06 2.80 1.27 1.83 0.75 2.69 2.59 2.41 4.15 3.57 1.28 2.94 3.97 4.42 2.33 2.33 4.93 0.99 3.23 2.72 3.00 0.00 1.47 0.74 4.41 1.56 4.27 K intron_retention CG6686 chr2L - chr2L_11987388_11987695 chr2L_11987387_11987388;chr2L_11987695_11987696 chr2L_11986438_11987387;chr2L_11987696_11988035 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.94 0.00 6.00 0.00 1.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 1.85 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 2.04 0.00 2.08 3.33 3.03 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 K alternative_acceptor CG9007,I_chr3L_13995402_13996269,I_chr3L_13995402_13996272,I_chr3L_13995402_13996296,I_chr3L_13995480_13996292,RI_chr3L_14010982_14011111 chr3L + chr3L_13995402_13996272;chr3L_13995402_13996296;chr3L_13995402_13996292 chr3L_13995402_13996269 chr3L_13995380_13995401;chr3L_13996297_13996360 0.00 NA 0.00 0.00 NA NA 0.00 0.00 6.67 NA NA 7.14 NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 14.29 NA NA NA NA NA NA 0.00 NA NA 9.09 0.00 NA NA NA NA NA NA 8.33 0.00 NA NA NA NA 0.00 5.88 NA NA NA NA NA 0.00 NA NA NA K alternative_donor CG18766,I_chr3R_23069667_23070256,I_chr3R_23069667_23070318,RI_chr3R_23069667_23070361,I_chr3R_23069667_23070365 chr3R - chr3R_23069667_23070738;chr3R_23069667_23070911 chr3R_23069667_23070732 chr3R_23069567_23069666;chr3R_23070912_23070951 5.88 5.56 4.65 1.33 10.34 9.38 7.81 8.11 5.38 6.67 0.00 3.80 0.00 7.14 12.50 9.09 5.26 5.71 7.50 7.45 0.00 3.45 3.77 5.88 0.00 0.00 8.82 0.00 9.09 3.33 4.35 10.34 8.11 7.58 10.00 6.45 5.41 6.90 9.09 2.94 5.56 5.41 5.41 8.82 9.09 5.56 7.89 7.14 5.00 7.69 8.51 3.23 4.00 7.41 6.00 4.88 4.88 7.32 K intron_retention CG6767,I_chr3L_9679564_9680329,CREI_chr3L_9679564_9687332,I_chr3L_9680354_9682364,I_chr3L_9682549_9689638,I_chr3L_9682607_9687332,RE_chr3L_9679576_9682364,RI_chr3L_9679579_9682364 chr3L - chr3L_9679564_9682364 chr3L_9679563_9679564;chr3L_9682364_9682365 chr3L_9679479_9679563;chr3L_9682365_9682463 4.55 NA 9.68 5.41 0.00 9.09 12.50 2.94 8.82 NA NA 11.36 6.67 7.41 4.00 0.00 9.52 0.00 3.23 5.56 3.70 20.00 8.70 11.11 NA 0.00 8.70 12.50 0.00 0.00 4.76 0.00 6.06 4.44 10.53 12.50 13.79 0.00 0.00 5.00 0.00 4.55 0.00 0.00 2.70 0.00 6.67 4.44 8.47 0.00 7.69 5.56 0.00 0.00 11.43 4.35 0.00 2.56 K intron_retention ire-1,FI_chr3R_15689914_15690042 chr3R - chr3R_15686484_15686607 chr3R_15686483_15686484;chr3R_15686607_15686608 chr3R_15686369_15686483;chr3R_15686608_15687013 0.00 1.39 0.00 1.06 0.00 0.00 0.00 0.00 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 1.23 4.69 2.67 0.00 0.00 0.00 1.77 6.96 1.92 0.00 1.72 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.56 1.28 0.67 0.00 1.28 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Pink1,F_chrX_6578108_6578160,F_chrX_6578108_6578165,F_chrX_6578108_6578251,I_chrX_6578115_6578251 chrX + chrX_6578104_6578160;chrX_6578104_6578165 chrX_6578104_6578251 chrX_6578015_6578103;chrX_6578252_6578260 8.33 0.00 NA 10.00 NA 0.00 0.00 7.14 8.33 NA 0.00 20.00 14.29 16.67 0.00 10.00 NA 25.00 NA 0.00 20.00 14.29 20.00 0.00 0.00 NA 0.00 NA 16.67 NA NA NA 16.67 11.11 20.00 0.00 NA NA 16.67 0.00 20.00 6.67 0.00 NA 0.00 14.29 NA 8.33 7.69 NA 16.67 NA NA NA 0.00 0.00 NA 20.00 K intron_retention CG5196,pps chr3R + chr3R_8234195_8234976 chr3R_8234194_8234195;chr3R_8234976_8234977 chr3R_8234070_8234194;chr3R_8234977_8235161 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 3.03 0.00 0.00 0.00 7.41 NA 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 3.70 2.70 4.08 3.45 0.00 0.00 6.25 2.33 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 K alternative_acceptor ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13413919_13414338;chr2R_13413823_13414338 chr2R_13413922_13414338 chr2R_13414339_13414406;chr2R_13412209_13413822 76.47 75.00 78.12 77.23 73.85 74.60 73.68 77.53 72.61 89.74 70.00 78.83 67.92 76.00 77.22 72.73 71.43 82.09 74.63 80.49 72.58 77.86 81.38 80.65 79.03 75.41 76.77 76.47 80.00 77.00 75.00 75.56 76.23 79.05 82.86 75.64 79.66 72.04 79.51 74.58 68.18 80.88 80.70 72.63 71.83 73.68 79.63 83.49 78.26 72.58 82.14 75.44 70.00 85.11 72.84 75.44 85.71 80.00 K jcn_only_AA R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8088454_8089184;chr2L_8088454_8088609;chr2L_8088454_8089057;chr2L_8088454_8089356;chr2L_8088454_8088664 chr2L_8088454_8089490 chr2L_8088448_8088453 6.05 NA 10.87 18.92 NA NA 5.66 8.93 14.06 NA NA 11.69 2.38 2.78 11.11 10.81 NA 5.00 13.64 8.25 13.04 NA 13.33 0.00 0.00 0.00 NA NA NA NA 2.78 NA 8.70 5.26 0.00 2.22 NA NA NA 9.30 5.00 6.90 6.45 23.33 NA 0.00 NA NA 0.00 NA 0.00 NA 8.70 NA 0.00 4.17 NA NA K jcn_only_AD CG3621,noncoding_21543,I_chrX_2066779_2066838 chrX + chrX_2066737_2066838;chrX_2066739_2066838 chrX_2066779_2066838 chrX_2066839_2066938;chrX_2066679_2066736 0.00 0.60 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.58 0.00 0.68 0.00 0.00 0.58 0.84 0.00 0.35 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.29 0.72 K jcn_only_AD CG4699 chr3R + chr3R_11624133_11624445;chr3R_11624190_11624445;chr3R_11624127_11624445 chr3R_11624200_11624445 chr3R_11624446_11624758;chr3R_11623809_11624126 41.51 40.00 35.00 23.08 19.05 NA 66.67 NA 51.28 37.84 NA 31.43 NA NA NA NA NA NA NA 45.24 NA 45.71 52.38 46.88 44.12 40.91 44.44 40.35 37.50 55.56 30.00 55.26 29.69 47.62 50.00 31.03 37.14 41.51 50.94 51.11 40.48 39.22 NA 59.52 20.59 37.50 43.90 31.58 34.78 42.00 54.76 60.00 53.33 48.28 36.36 53.12 34.78 22.92 K jcn_only_AD arm,I_chrX_1790787_1794076,I_chrX_1793073_1793336,I_chrX_1793073_1793350,I_chrX_1793073_1793389,I_chrX_1793073_1793734,I_chrX_1793073_1794406,RI_chrX_1795648_1795745,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1793073_1793413;chrX_1793073_1793431 chrX_1793073_1793794 chrX_1793013_1793072;chrX_1793795_1793834 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 2.63 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA 0.00 NA 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K cassette spz chr3R - chr3R_22892388_22894865;chr3R_22892388_22892843 chr3R_22892388_22892450;chr3R_22892607_22892843,chr3R_22892607_22894865 chr3R_22892451_22892606 chr3R_22892330_22892387;chr3R_22894866_22895053 22.62 24.58 22.89 17.38 20.83 22.16 36.97 18.32 27.47 20.47 26.92 38.50 27.16 26.82 30.70 21.18 18.50 21.13 30.96 16.46 19.70 33.55 19.55 18.49 21.92 44.44 16.82 15.73 28.19 23.78 28.18 21.47 20.00 23.22 22.62 34.45 22.97 20.13 22.66 27.46 18.57 24.65 24.71 39.41 21.86 20.91 20.30 23.49 23.12 14.76 19.12 29.93 28.02 19.14 26.64 21.23 15.66 16.63 K intron_retention hoip,I_chr2L_9708081_9708144 chr2L + chr2L_9699938_9699999 chr2L_9699937_9699938;chr2L_9699999_9700000 chr2L_9699782_9699937;chr2L_9700000_9700560 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 K jcn_only_AA CG11006,F_chr3L_12799159_12799339 chr3L + chr3L_12799438_12800192;chr3L_12799438_12799955;chr3L_12799438_12800078;chr3L_12799438_12799967 chr3L_12799438_12799952 chr3L_12799340_12799437;chr3L_12800193_12800930 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 NA 1.85 0.00 0.00 0.00 NA NA 0.00 0.00 3.70 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 4.17 NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 K intron_retention E(bx),I_chr3L_246324_246699 chr3L - chr3L_246324_246427 chr3L_246323_246324;chr3L_246427_246428 chr3L_246224_246323;chr3L_246428_246438 48.98 42.86 47.37 68.18 64.29 43.75 48.98 59.38 60.47 NA 53.33 52.94 60.87 33.33 50.00 46.43 52.94 47.06 50.00 65.62 45.00 26.32 47.37 NA 36.36 35.29 36.36 NA NA 30.77 52.94 NA 63.64 51.43 42.86 20.00 58.82 NA 33.33 50.00 NA 57.58 42.86 63.64 NA NA NA 56.52 58.82 NA 38.89 41.67 NA NA 47.83 NA NA NA K intron_retention CG13384 chr2L + chr2L_8386386_8386474 chr2L_8386385_8386386;chr2L_8386474_8386475 chr2L_8386217_8386385;chr2L_8386475_8387378 4.33 2.51 4.92 5.61 6.88 4.00 5.49 5.11 3.97 1.75 4.32 6.05 3.24 7.73 5.60 5.02 4.05 6.08 5.53 3.51 3.61 3.15 4.17 3.56 3.45 5.92 4.30 5.19 2.08 4.33 5.13 5.62 4.48 4.29 4.45 5.17 2.91 2.49 2.64 3.14 4.37 4.40 6.52 2.49 3.17 4.84 2.79 5.47 6.36 5.12 2.15 3.47 6.40 2.47 5.50 4.19 3.63 4.52 K intron_retention didum,I_chr2R_3393005_3393348 chr2R + chr2R_3389534_3389606 chr2R_3389533_3389534;chr2R_3389606_3389607 chr2R_3389295_3389533;chr2R_3389607_3390095 0.00 NA 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K alternative_acceptor woc,I_chr3R_23089174_23089695,I_chr3R_23096096_23096561 chr3R - chr3R_23087663_23087837 chr3R_23087666_23087837 chr3R_23087838_23087882;chr3R_23086219_23087662 41.67 42.11 41.67 60.00 NA 55.56 NA 50.00 47.06 NA NA 37.50 NA NA NA NA NA NA NA 47.06 NA 36.36 54.17 50.00 NA NA 41.67 NA NA 42.86 NA 30.77 50.00 33.33 46.15 NA 38.89 32.00 43.75 39.29 NA 41.18 NA 44.00 NA 40.00 35.71 46.15 61.54 45.45 36.36 NA NA 36.36 40.00 35.71 NA 28.57 K jcn_only_AA key,I_chr2R_20674567_20674813,I_chr2R_20674654_20674897,RI_chr2R_20676692_20676888 chr2R - chr2R_20674567_20674813 chr2R_20674654_20674813 chr2R_20674814_20674879;chr2R_20674554_20674566 96.27 95.77 98.18 94.90 94.87 97.62 97.78 95.96 97.09 NA 100.00 97.27 100.00 100.00 95.24 96.00 100.00 97.30 94.83 96.72 95.74 98.02 100.00 95.38 96.08 94.87 98.17 97.87 86.36 96.61 96.15 97.78 92.11 95.06 93.55 95.12 92.19 93.55 95.71 97.50 100.00 97.89 93.33 98.88 91.67 98.84 96.39 87.10 94.17 96.63 98.00 96.67 95.52 95.65 100.00 94.87 95.08 97.22 K intron_retention RpS18,CG8908,EI_chr2R_16151918_16151997,I_chr2R_16151918_16152036,I_chr2R_16151938_16152065,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151938_16152065 chr2R_16151937_16151938;chr2R_16152065_16152066 chr2R_16151852_16151937;chr2R_16152066_16152066 99.97 99.94 99.97 99.98 99.97 99.97 99.97 99.98 99.97 100.00 100.00 99.99 99.96 99.96 99.97 99.97 99.96 99.97 100.00 99.99 100.00 99.65 99.97 99.95 99.96 99.97 99.95 99.95 99.93 100.00 99.97 99.96 99.96 99.98 99.95 99.96 99.98 99.97 99.95 99.92 99.96 99.97 100.00 99.97 100.00 99.97 100.00 100.00 99.98 99.97 99.94 100.00 100.00 99.97 99.97 99.90 100.00 99.98 K intron_retention CG3608 chr2R + chr2R_20499346_20499689 chr2R_20499345_20499346;chr2R_20499689_20499690 chr2R_20499279_20499345;chr2R_20499690_20500810 0.00 0.00 0.00 0.00 4.35 0.00 9.52 0.00 4.65 0.00 0.00 5.00 NA 0.00 5.56 NA 0.00 NA NA 2.17 NA 4.35 0.00 3.92 0.00 0.00 0.00 0.00 3.03 4.00 22.22 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 6.06 NA 0.00 0.00 0.00 0.00 NA 5.00 0.00 0.00 0.00 0.00 7.41 0.00 5.56 0.00 NA K intron_retention Rala chrX - chrX_3602952_3603868 chrX_3602951_3602952;chrX_3603868_3603869 chrX_3602777_3602951;chrX_3603869_3604029 2.11 1.54 0.00 0.00 0.00 0.00 4.92 2.11 1.72 0.00 6.90 0.00 0.00 0.00 0.00 2.44 0.00 3.03 1.72 1.54 8.57 6.90 3.85 1.67 7.41 0.00 8.51 16.00 9.76 3.12 0.00 0.00 0.00 1.16 0.00 6.98 6.17 7.14 6.12 2.78 0.00 2.63 0.00 6.41 0.00 2.70 1.92 0.00 2.91 4.44 8.06 6.98 2.53 5.88 1.27 6.35 6.49 0.00 K jcn_only_AA SelR,I_chr3R_6691367_6692250,I_chr3R_6692461_6692530,I_chr3R_6694098_6694160 chr3R - chr3R_6689548_6692250 chr3R_6689581_6692250 chr3R_6692251_6692350;chr3R_6689071_6689547 15.25 13.11 16.46 34.29 7.81 11.11 7.14 15.05 12.24 22.37 10.34 9.24 18.75 15.00 9.57 21.67 1.54 21.74 9.62 10.67 15.56 13.21 24.55 19.81 18.64 21.28 29.59 15.25 18.31 15.38 22.41 11.86 20.18 15.15 19.05 41.27 22.22 24.10 10.71 20.99 10.53 14.88 15.25 15.52 17.39 11.72 10.00 19.27 10.43 13.18 12.26 22.64 7.24 19.82 9.72 22.03 12.93 16.49 K intron_retention Lag1,RI_chrX_6153758_6161036,I_chrX_6160751_6160887,I_chrX_6160907_6161036 chrX - chrX_6160907_6161036 chrX_6160906_6160907;chrX_6161036_6161037 chrX_6160888_6160906;chrX_6161037_6161136 95.92 97.73 96.67 98.88 97.22 96.08 93.14 99.14 96.75 96.43 95.00 92.00 98.41 97.10 98.41 90.83 92.73 95.92 97.40 94.62 93.33 98.15 96.67 96.08 90.00 92.31 97.18 97.22 96.55 94.87 94.03 91.67 92.00 96.55 92.73 97.67 96.55 93.55 91.67 90.11 94.87 94.74 96.61 97.50 84.00 97.47 95.83 92.86 94.69 93.10 98.77 92.50 85.71 97.06 96.10 91.43 91.30 98.08 K intron_retention myoglianin,RI_chr4_712986_714006,RI_chr4_716066_716482,RI_chr4_716153_716613 chr4 - chr4_712986_714006 chr4_712985_712986;chr4_714006_714007 chr4_712886_712985;chr4_714007_714106 0.00 NA NA 0.00 NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG2889 chrX + chrX_10370159_10370215 chrX_10370158_10370159;chrX_10370215_10370216 chrX_10369714_10370158;chrX_10370216_10370428 0.00 8.70 0.00 13.64 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 3.45 NA 0.00 0.00 3.45 NA 0.00 0.00 0.00 NA 0.00 3.23 NA 0.00 0.00 5.88 NA 0.00 0.00 11.76 0.00 3.85 4.76 0.00 2.94 NA 0.00 0.00 0.00 5.56 6.67 0.00 NA 0.00 4.35 0.00 0.00 NA 0.00 4.35 0.00 0.00 NA K cassette Nc73EF,F_chr3L_16952838_16955936,CE_chr3L_16952842_16955936,I_chr3L_16952985_16955434,I_chr3L_16953768_16954599 chr3L + chr3L_16953768_16955434;chr3L_16952985_16955434 chr3L_16953768_16954599,chr3L_16952985_16954599;chr3L_16954703_16955434 chr3L_16954600_16954702 chr3L_16952885_16952984;chr3L_16955435_16955513 59.13 64.06 50.00 85.37 33.87 43.40 61.73 62.96 60.47 71.43 71.15 86.73 81.82 52.83 62.12 37.80 55.56 50.98 74.55 57.01 62.16 58.33 55.38 64.13 67.19 58.49 60.82 72.86 54.55 66.67 50.79 56.00 53.06 46.99 60.00 81.25 70.27 56.25 72.50 67.74 68.18 50.86 54.55 60.00 59.26 45.00 58.49 39.02 45.76 62.03 59.13 67.21 54.29 59.09 56.25 69.35 55.56 37.04 K jcn_only_AA msps,I_chr3R_11877071_11877796 chr3R + chr3R_11885098_11885206;chr3R_11885098_11885182 chr3R_11885098_11885185 chr3R_11884965_11885097;chr3R_11885207_11885406 0.00 0.00 NA 0.00 NA NA 0.00 3.85 2.27 0.00 NA 0.00 NA NA 0.00 4.76 NA NA NA 0.00 0.00 2.63 0.00 0.00 0.00 NA 0.00 NA 0.00 3.85 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 NA 0.00 NA 0.00 0.00 0.00 0.00 5.00 0.00 2.44 1.79 0.00 0.00 0.00 0.00 2.38 0.00 NA K alternative_acceptor tou,I_chr2R_7468394_7468453,RI_chr2R_7474644_7475275,I_chr2R_7479681_7491857,I_chr2R_7504956_7505020 chr2R - chr2R_7468368_7468453 chr2R_7468394_7468453 chr2R_7468454_7468553;chr2R_7468294_7468367 32.88 28.81 37.50 50.00 38.71 47.62 29.63 29.41 32.88 50.00 28.00 39.51 30.00 34.38 26.19 31.25 23.68 58.97 40.00 40.96 28.12 35.71 20.18 17.76 31.67 30.95 31.25 39.56 78.33 42.45 50.00 60.00 29.38 28.33 35.14 36.36 20.81 23.61 24.74 49.40 57.28 33.71 33.33 29.47 48.70 70.50 23.61 78.66 35.37 22.97 24.36 31.11 27.14 28.07 39.13 26.03 16.67 58.94 K jcn_only_AA Iswi chr2R + chr2R_8524243_8524328;chr2R_8524243_8524348 chr2R_8524243_8524316 chr2R_8524226_8524242;chr2R_8524349_8524495 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 NA 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 1.08 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K alternative_last_exon CG7927,I_chr3L_8109906_8110404 chr3L + chr3L_8105815_8106114,chr3L_8105815_8106111 chr3L_8105815_8105881 chr3L_8106115_8109629 chr3L_8105882_8106111 chr3L_8105594_8105814 1.18 0.00 0.00 3.28 0.00 0.00 7.94 3.23 1.18 6.25 0.00 1.72 7.14 3.03 0.00 1.52 3.70 4.00 0.00 1.45 0.00 8.00 2.04 2.63 0.00 0.00 5.56 4.55 4.35 4.00 0.00 0.00 0.00 3.33 0.00 6.67 0.00 0.00 0.00 2.13 3.33 1.61 0.00 0.00 0.00 0.00 0.00 3.70 1.52 2.50 2.22 0.00 0.00 0.00 0.00 2.50 0.00 0.00 K jcn_only_AA DCAP,RI_chr2R_6183553_6192101,I_chr2R_6188094_6192101 chr2R + chr2R_6188094_6192128 chr2R_6188094_6192101 chr2R_6188087_6188093;chr2R_6192129_6192201 16.00 NA NA NA NA NA NA 13.04 10.00 NA NA 9.52 NA NA NA NA NA NA 20.83 17.39 NA NA NA NA NA NA NA NA NA NA NA NA 25.00 16.00 NA NA 17.39 NA NA 17.24 NA 23.08 NA NA NA 15.00 14.29 20.83 9.09 NA NA NA 9.09 NA NA NA 19.05 12.24 K jcn_only_AD RpL15 chr3LHet + chr3LHet_2397992_2398049;chr3LHet_2397859_2398049 chr3LHet_2397820_2398049 chr3LHet_2398050_2398052;chr3LHet_2397802_2397819 8.39 0.00 0.00 20.37 NA NA 0.61 12.86 1.54 NA NA 5.26 0.00 3.12 NA 8.45 8.00 5.00 12.90 4.08 NA 12.77 4.17 0.00 0.00 8.33 NA 60.00 27.50 NA 35.59 35.90 25.00 15.79 4.76 NA NA NA NA 55.07 32.61 21.43 9.09 32.00 27.27 20.00 3.45 47.50 15.94 0.00 0.00 NA NA 4.35 NA 2.70 0.00 50.00 K alternative_acceptor CG3262 chr2L + chr2L_22240104_22240169 chr2L_22240104_22240153 chr2L_22239906_22240103;chr2L_22240170_22240402 29.21 33.72 24.00 32.76 30.77 25.81 30.41 24.30 34.91 23.81 27.27 28.06 37.31 26.57 25.17 28.08 27.50 26.32 26.35 22.76 25.22 34.62 25.60 29.68 33.33 30.26 31.40 29.41 31.36 35.23 12.02 27.67 31.58 25.12 33.94 20.66 29.41 34.48 30.08 26.61 40.52 26.89 21.70 32.08 38.85 29.84 28.26 27.42 24.65 29.46 37.58 31.11 27.83 33.04 25.14 28.65 29.21 31.56 K alternative_donor myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_716066_716482;chr4_716066_716613 chr4_716066_716322 chr4_716053_716065;chr4_716614_716661 80.00 100.00 87.50 82.61 NA 71.43 81.82 92.59 82.86 NA 100.00 84.62 75.00 84.21 66.67 80.43 77.78 40.00 57.14 78.57 62.50 NA 71.43 75.00 60.00 75.00 NA NA NA 100.00 80.00 NA NA 79.17 80.00 NA 100.00 NA NA 71.43 NA 78.95 61.54 100.00 NA NA 100.00 100.00 77.78 NA 80.00 83.33 NA NA 71.43 NA NA NA K intron_retention Kap-alpha3,RE_chr3R_5403032_5403325,I_chr3R_5403032_5403329,E_chr3R_5403032_5403405 chr3R - chr3R_5403032_5403369 chr3R_5403031_5403032;chr3R_5403369_5403370 chr3R_5402932_5403031;chr3R_5403370_5403425 100.00 97.44 100.00 99.11 96.43 100.00 98.92 100.00 98.10 100.00 100.00 100.00 95.92 100.00 100.00 99.28 100.00 100.00 100.00 98.70 100.00 92.68 98.21 100.00 95.83 100.00 100.00 100.00 100.00 100.00 98.08 95.65 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 98.91 97.92 97.30 100.00 100.00 96.67 100.00 96.80 100.00 100.00 100.00 100.00 100.00 97.78 100.00 97.87 100.00 K alternative_donor CG5018,PDCD-5 chr3L - chr3L_16219459_16219686 chr3L_16219459_16219677 chr3L_16219222_16219458;chr3L_16219687_16221520 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG32795,I_chrX_2677459_2682526,I_chrX_2677729_2677799,I_chrX_2679163_2681784 chrX - chrX_2683412_2683778 chrX_2683473_2683778 chrX_2683779_2683818;chrX_2683271_2683411 6.06 NA NA NA NA NA NA NA 7.69 NA NA 6.25 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 5.88 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 11.76 NA NA NA NA NA NA NA NA NA N cassette shep,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5154702_5156066 chr3L_5154702_5155555;chr3L_5155711_5156066 chr3L_5155556_5155710 chr3L_5153808_5154701;chr3L_5156067_5156229 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG11710 chrX - chrX_20299200_20299259 chrX_20299199_20299200;chrX_20299259_20299260 chrX_20299091_20299199;chrX_20299260_20299726 0.00 9.09 0.00 11.76 0.00 0.00 2.63 0.00 0.00 0.00 0.00 2.63 NA 0.00 0.00 9.09 14.29 0.00 0.00 2.04 NA 5.56 0.00 0.00 0.00 12.50 4.35 3.12 2.94 0.00 0.00 0.00 0.00 3.12 0.00 3.45 2.08 0.00 0.00 1.64 7.69 0.00 0.00 3.03 2.86 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 K intron_retention CG9779 chr3R - chr3R_136081_136135 chr3R_136080_136081;chr3R_136135_136136 chr3R_135364_136080;chr3R_136136_136370 0.87 0.00 1.23 5.32 0.00 1.72 0.00 2.83 3.97 0.00 1.23 3.55 1.59 0.00 1.02 0.00 1.72 0.00 0.00 0.54 0.00 3.03 0.87 0.00 3.28 2.60 0.95 9.09 4.76 0.00 3.12 0.00 0.00 2.08 0.00 0.00 2.17 1.41 2.78 2.74 0.00 1.68 0.00 3.49 0.00 2.02 0.87 0.00 1.48 2.86 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 K intron_retention Akap200,I_chr2L_8415846_8426873,I_chr2L_8417052_8426873,I_chr2L_8420065_8426872,I_chr2L_8426446_8426873 chr2L + chr2L_8415887_8426873 chr2L_8415886_8415887;chr2L_8426873_8426874 chr2L_8415729_8415886;chr2L_8426874_8426972 1.28 1.32 2.10 1.27 1.32 2.44 5.02 1.94 3.26 1.59 0.00 1.98 0.00 3.64 1.66 2.93 3.47 0.84 1.35 1.09 0.90 2.52 2.33 0.97 1.59 1.24 1.04 2.29 0.69 1.22 1.66 0.00 1.23 3.06 2.77 0.97 0.70 0.76 0.88 1.09 0.00 1.81 1.94 1.28 0.00 0.17 0.00 2.36 2.31 0.00 1.83 2.52 0.00 0.00 1.74 0.00 0.00 0.43 K alternative_donor dorsal,RI_chr2L_17438018_17439189,FI_chr2L_17449369_17450215,noncoding_3500,RI_chr2L_17450002_17450219 chr2L - chr2L_17449369_17450325;chr2L_17449369_17449875;chr2L_17449369_17450310;chr2L_17449369_17450215 chr2L_17449369_17450219 chr2L_17449296_17449368;chr2L_17450326_17450359 80.00 80.95 78.95 75.81 75.00 90.62 69.49 80.00 74.65 73.33 82.76 84.62 77.42 72.97 86.36 75.00 73.33 80.00 72.09 85.71 81.25 75.68 70.97 72.00 83.33 74.29 80.00 75.00 75.56 81.58 84.29 89.29 77.36 78.05 90.62 75.00 81.82 81.82 81.25 79.10 77.55 85.71 70.59 75.86 80.65 81.94 80.00 84.11 79.55 80.00 77.78 80.95 84.62 88.24 85.42 91.30 70.00 82.54 K intron_retention Pp2A-29B,I_chr2L_8366082_8366148,I_chr2L_8367210_8367311,I_chr2L_8369561_8369715 chr2L + chr2L_8366082_8366137 chr2L_8366081_8366082;chr2L_8366137_8366138 chr2L_8366075_8366081;chr2L_8366138_8366394 99.60 97.80 99.24 100.00 99.10 100.00 98.55 98.85 98.97 100.00 99.13 99.53 99.35 99.17 100.00 99.66 99.32 100.00 99.34 99.23 99.15 98.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.44 100.00 100.00 98.43 100.00 98.46 98.67 100.00 100.00 97.93 98.39 99.60 99.15 99.07 100.00 100.00 100.00 100.00 98.30 98.59 100.00 100.00 100.00 100.00 99.42 97.96 98.63 100.00 K intron_retention CG8613 chr2R + chr2R_10240039_10240099 chr2R_10240038_10240039;chr2R_10240099_10240100 chr2R_10239901_10240038;chr2R_10240100_10240237 15.38 NA NA NA NA NA NA NA 17.39 NA NA 13.33 NA NA NA NA NA NA NA 17.65 NA NA 11.76 NA NA NA 15.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.09 NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA NA NA K intron_retention Mlh1,I_chr2R_4058619_4058671 chr2R + chr2R_4058615_4058671 chr2R_4058614_4058615;chr2R_4058671_4058672 chr2R_4058519_4058614;chr2R_4058672_4058771 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.79 3.45 0.00 NA 0.00 7.41 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 22.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.88 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8165,CG8176,I_chr3R_5348614_5348964 chr3R + chr3R_5341890_5343982 chr3R_5341889_5341890;chr3R_5343982_5343983 chr3R_5341790_5341889;chr3R_5343983_5346631 19.54 NA NA NA NA NA NA 15.79 33.33 NA NA 25.00 NA NA NA 26.32 NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA 23.08 NA NA 13.33 NA NA NA NA NA NA NA 15.79 NA NA NA NA NA NA 16.00 NA NA NA NA NA 30.77 NA NA NA K jcn_only_AA vap,RI_chrX_15897976_15899352,I_chrX_15897976_15899654,I_chrX_15898011_15899654,I_chrX_15898427_15899017,RI_chrX_15898427_15899654,RI_chrX_15899237_15899352,I_chrX_15899237_15899654 chrX - chrX_15898115_15898360 chrX_15898120_15898360 chrX_15898361_15898368;chrX_15897748_15898114 97.62 NA 97.62 100.00 NA 92.31 97.87 92.55 95.71 NA 96.97 98.18 96.00 97.06 NA 100.00 100.00 NA 95.92 98.31 96.00 97.06 97.06 NA NA 100.00 NA NA NA 93.33 96.30 NA 100.00 98.51 100.00 91.67 NA NA NA NA NA 98.11 94.12 95.65 NA 100.00 NA 100.00 98.61 NA 100.00 NA NA NA 91.89 NA NA 100.00 K multi_cassette srp,I_chr3R_11825782_11827473,I_chr3R_11826508_11826910 chr3R + chr3R_11825782_11827473 chr3R_11825782_11826334;chr3R_11826508_11826910;chr3R_11827129_11827473 chr3R_11826335_11826507;chr3R_11826911_11827128 chr3R_11825682_11825781;chr3R_11827474_11827573 30.00 NA NA 3.70 NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA 50.00 NA 0.00 NA 7.69 NA NA NA NA 0.00 33.33 75.00 NA NA 75.00 NA NA NA 33.33 30.00 20.00 16.67 NA NA 75.00 NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA K cassette CG34408,I_chrX_10120689_10121004 chrX + chrX_10120055_10120547 chrX_10120055_10120212;chrX_10120405_10120547 chrX_10120213_10120404 chrX_10119840_10120054;chrX_10120548_10120688 100.00 100.00 100.00 100.00 100.00 100.00 74.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 98.31 100.00 97.06 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 96.43 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette CG7381,F_chr3R_8796163_8799298,I_chr3R_8796541_8802728 chr3R - chr3R_8796541_8802728 chr3R_8796541_8799298;chr3R_8799449_8802728 chr3R_8799299_8799448 chr3R_8796441_8796540;chr3R_8802729_8802828 66.67 50.00 66.67 50.00 NA 66.67 62.50 63.16 68.18 NA NA 80.00 55.56 88.89 66.67 63.64 80.00 NA 60.00 61.54 55.56 69.23 NA NA NA NA NA NA NA NA 70.83 NA NA 75.00 85.71 NA NA NA NA 55.56 NA 50.00 60.00 NA NA 83.33 NA 75.00 64.71 NA 58.33 NA NA NA 66.67 66.67 NA NA K alternative_donor CG5484 chr3R + chr3R_22543722_22544049;chr3R_22543734_22544049 chr3R_22543749_22544049 chr3R_22544050_22544588;chr3R_22543570_22543721 2.90 1.10 4.62 3.03 1.49 1.69 2.06 0.87 1.27 0.00 0.00 3.60 2.82 3.77 2.27 7.79 1.45 0.00 1.56 2.11 0.00 10.45 4.67 2.22 3.51 3.39 6.90 3.85 6.35 1.69 8.57 2.70 6.67 1.00 4.26 1.75 1.34 2.27 3.95 5.68 7.14 3.68 3.28 3.49 5.17 3.70 2.38 3.45 3.51 2.90 5.62 2.86 2.94 2.22 2.99 2.17 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2393243 chrX_2388671_2389073;chrX_2389272_2389644;chrX_2389762_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2393243 chrX_2389074_2389271;chrX_2389645_2389761;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2388641_2388670;chrX_2393244_2393291 25.00 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RnpS1,I_chr3R_5377907_5378412,I_chr3R_5378314_5378412 chr3R + chr3R_5377907_5377982 chr3R_5377906_5377907;chr3R_5377982_5377983 chr3R_5377807_5377906;chr3R_5377983_5378144 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.51 6.82 0.00 2.33 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.00 1.14 2.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 K intron_retention I_chr3L_3223943_3224313,CG11505 chr3L + chr3L_3225289_3226876 chr3L_3225288_3225289;chr3L_3226876_3226877 chr3L_3224966_3225288;chr3L_3226877_3227705 4.35 0.00 0.00 4.88 4.35 0.00 10.87 5.77 4.92 0.00 0.00 8.06 10.00 4.00 2.56 4.88 4.00 0.00 0.00 1.69 0.00 16.36 7.69 5.41 6.67 14.29 6.25 17.24 8.33 2.63 0.00 NA 8.33 7.14 9.09 9.09 4.35 8.00 0.00 6.67 14.29 6.56 0.00 0.00 NA 0.00 NA 2.50 0.00 NA 2.13 0.00 NA NA 7.69 NA NA 0.00 K cassette CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,RI_chr3L_20348088_20348382,I_chr3L_20348230_20348404 chr3L + chr3L_20347506_20348404 chr3L_20347506_20347899;chr3L_20348088_20348404 chr3L_20347900_20348087 chr3L_20347207_20347505;chr3L_20348405_20348482 93.54 91.67 100.00 100.00 100.00 100.00 91.67 87.50 93.75 NA 100.00 91.67 90.91 100.00 100.00 90.00 90.00 100.00 100.00 90.00 100.00 92.31 93.75 100.00 100.00 NA 100.00 83.33 87.50 83.33 92.86 93.75 100.00 92.31 83.33 NA 100.00 100.00 83.33 95.00 83.33 100.00 100.00 88.89 91.67 91.67 90.00 87.50 93.33 88.89 100.00 100.00 85.71 88.89 100.00 100.00 88.89 100.00 K intron_retention Cam,I_chr2R_8152423_8161270,R_chr2R_8156928_8161261,noncoding_6216,I_chr2R_8161049_8161270 chr2R + chr2R_8152423_8156697 chr2R_8152422_8152423;chr2R_8156697_8156698 chr2R_8152323_8152422;chr2R_8156698_8156940 0.00 0.00 0.00 0.11 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.24 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette trx chr3R - chr3R_10101091_10104814;chr3R_10101091_10111930 chr3R_10101091_10102027;chr3R_10103265_10104814,chr3R_10103265_10111930 chr3R_10102028_10103264 chr3R_10099914_10101090;chr3R_10111931_10112601 97.22 100.00 100.00 97.56 94.74 95.00 87.80 95.24 98.18 100.00 94.44 96.00 100.00 100.00 100.00 97.22 100.00 94.74 95.83 100.00 94.12 82.98 97.50 95.65 95.45 96.00 96.67 85.19 100.00 93.10 100.00 100.00 96.88 97.73 95.65 96.30 89.47 100.00 96.30 97.22 100.00 100.00 92.00 96.15 100.00 100.00 100.00 96.43 97.62 80.00 87.10 93.75 100.00 100.00 96.55 100.00 100.00 100.00 K jcn_only_AA vsg,I_chr3L_9707724_9708265 chr3L + chr3L_9707724_9708846 chr3L_9707724_9708843 chr3L_9707624_9707723;chr3L_9708847_9710788 40.53 39.74 38.82 38.05 37.38 39.26 36.11 37.59 40.55 42.86 38.07 39.74 38.15 42.08 38.76 40.86 39.37 39.07 42.50 39.16 40.29 40.53 43.78 42.51 37.44 38.11 42.39 42.20 42.11 39.54 41.29 41.12 42.76 38.17 42.86 38.48 43.70 42.97 43.05 37.71 42.52 39.63 37.94 41.13 42.20 40.73 38.66 39.53 38.93 40.75 42.25 38.42 41.34 42.16 40.58 43.10 38.36 43.27 K jcn_only_AD RpL28,RI_chr3L_3221710_3221877,I_chr3L_3221982_3222744,snoRNA:Or-CD11c,snoRNA:Or-CD11b,snoRNA:Or-CD11a,I_chr3L_3222575_3222787 chr3L - chr3L_3221982_3222787;chr3L_3221982_3222152;chr3L_3221982_3222574;chr3L_3221982_3222926;chr3L_3221982_3222365 chr3L_3221982_3222847 chr3L_3221882_3221981;chr3L_3222927_3222958 2.97 5.26 1.46 0.65 1.89 0.87 4.05 1.40 5.11 5.06 2.97 4.01 2.90 3.52 1.06 4.33 2.15 2.13 0.90 1.81 1.68 8.72 8.33 11.66 8.33 1.33 12.40 5.41 5.68 1.45 1.73 0.76 0.30 0.98 8.90 4.95 14.52 14.85 6.35 1.49 2.01 1.04 0.24 5.26 0.63 1.85 9.92 0.37 1.00 10.16 9.76 4.46 3.73 11.01 1.29 9.20 8.70 0.35 K alternative_acceptor R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083458_8089393;chr2L_8083458_8089356 chr2L_8083458_8089184 chr2L_8083444_8083457;chr2L_8089394_8089493 89.73 NA NA NA NA NA NA 88.46 NA 85.71 NA 89.47 NA 84.62 NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA 100.00 70.00 NA NA NA NA NA NA 81.25 NA 94.44 NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA 90.91 NA NA NA K intron_retention Smg5 chr2L - chr2L_13900064_13900142 chr2L_13900063_13900064;chr2L_13900142_13900143 chr2L_13899369_13900063;chr2L_13900143_13900301 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8908,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16153230_16153281 chr2R_16153229_16153230;chr2R_16153281_16153282 chr2R_16152728_16153229;chr2R_16153282_16153862 27.15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.53 NA NA NA 20.00 NA 33.33 30.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention REI_chr3L_1545423_1545473,I_chr3L_1545606_1545652,CG12099,CG7879 chr3L - chr3L_1558215_1558322 chr3L_1558214_1558215;chr3L_1558322_1558323 chr3L_1557789_1558214;chr3L_1558323_1558468 100.00 100.00 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 K jcn_only_AD CG1970,I_chr4_590970_591030,I_chr4_591160_591222 chr4 - chr4_591160_591229 chr4_591160_591222 chr4_591060_591159;chr4_591230_591322 1.89 1.09 0.60 3.18 2.06 3.51 1.72 0.42 0.37 2.17 2.63 1.51 1.53 0.70 2.04 1.04 0.74 2.55 2.68 3.09 2.42 1.02 2.40 1.22 4.39 0.00 1.48 4.65 0.00 7.26 9.27 2.22 3.23 2.79 0.97 1.89 1.22 1.40 4.21 3.30 2.33 1.13 1.44 4.65 4.10 1.46 2.25 0.00 1.18 0.72 2.41 5.69 1.56 0.82 1.08 2.30 2.19 1.23 K intron_retention CG7082,RI_chr2L_2224527_2224586,I_chr2L_2229179_2229265 chr2L + chr2L_2224527_2224578 chr2L_2224526_2224527;chr2L_2224578_2224579 chr2L_2224427_2224526;chr2L_2224579_2224685 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27044867;chr3R_27044771_27045188;chr3R_27044771_27045257;chr3R_27044771_27045132;chr3R_27044771_27045027;chr3R_27044771_27044831;chr3R_27044771_27044990;chr3R_27044771_27044895 chr3R_27044771_27045110 chr3R_27044671_27044770;chr3R_27045258_27045273 0.00 0.00 0.17 0.19 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.27 0.24 0.00 0.12 0.20 0.13 0.00 0.13 0.09 0.23 0.00 0.00 0.00 0.00 0.00 2.50 0.00 1.48 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.70 0.07 0.17 0.63 0.00 0.00 0.00 0.19 0.07 0.00 0.00 0.00 0.00 0.00 0.12 0.00 3.16 0.12 K alternative_donor chico,I_chr2L_10246534_10246899 chr2L - chr2L_10246040_10246184;chr2L_10246040_10247024;chr2L_10246040_10246755;chr2L_10246040_10246899 chr2L_10246040_10246867 chr2L_10245878_10246039;chr2L_10247025_10247051 11.32 16.67 15.38 9.68 0.00 16.67 10.34 13.89 8.70 0.00 15.38 13.16 4.55 13.04 12.50 13.95 15.79 17.65 11.54 11.32 16.67 0.00 8.33 12.50 14.29 15.79 10.53 15.00 22.22 0.00 10.71 5.88 14.29 11.43 0.00 11.76 3.70 7.14 9.09 6.67 33.33 13.51 17.65 10.34 7.14 0.00 0.00 12.00 7.32 0.00 5.56 0.00 15.38 0.00 12.90 0.00 0.00 12.50 K intron_retention CG10069,I_chr2R_17169897_17170495,I_chr2R_17170432_17170491,I_chr2R_17171765_17171886 chr2R + chr2R_17171617_17171886 chr2R_17171616_17171617;chr2R_17171886_17171887 chr2R_17171048_17171616;chr2R_17171887_17171986 2.99 5.00 3.28 1.75 1.85 1.82 3.12 5.48 2.94 0.00 0.00 3.51 4.35 6.90 2.82 4.35 0.00 3.45 7.94 2.88 0.00 3.77 6.45 0.00 0.00 1.64 6.52 4.17 0.00 3.12 2.99 4.35 3.23 3.37 0.00 5.26 0.00 7.32 3.28 2.25 0.00 5.75 3.92 3.08 2.60 2.90 5.71 4.88 1.09 0.00 0.00 0.00 0.00 4.17 1.15 0.00 4.26 1.04 N cassette Nos,I_chr2L_10826086_10826539 chr2L - chr2L_10807128_10812286 chr2L_10807128_10807290;chr2L_10807625_10812286 chr2L_10807291_10807624 chr2L_10806775_10807127;chr2L_10812287_10812302 100.00 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA 24.32 100.00 100.00 NA NA NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA K jcn_only_AD nudE chr3L + chr3L_9893987_9894442 chr3L_9894119_9894442 chr3L_9894443_9894534;chr3L_9893861_9893986 100.00 100.00 98.86 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.21 100.00 K jcn_only_AA CG42541,F_chrX_3804144_3804471,F_chrX_3805550_3805649 chrX - chrX_3799931_3800237 chrX_3799934_3800237 chrX_3800238_3800291;chrX_3799825_3799930 90.91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette p120ctn,I_chr2R_482968_494268,I_chr2R_487593_493262 chr2R + chr2R_482968_486773 chr2R_482968_486373;chr2R_486654_486773 chr2R_486374_486653 chr2R_482868_482967;chr2R_486774_487425 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 2.86 NA NA 0.00 0.00 0.00 0.00 0.98 5.00 0.00 2.56 1.61 7.14 0.00 3.57 5.00 NA 4.35 6.67 12.50 0.00 4.76 2.13 NA 0.00 1.59 0.00 3.45 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 1.28 NA 0.00 3.85 NA NA 2.70 NA NA 0.00 K cassette gus,I_chr2R_1009158_1009345,RI_chr2R_1009158_1011540,I_chr2R_1009346_1015730 chr2R - chr2R_1009158_1015730;chr2R_1009158_1009487 chr2R_1009158_1009273;chr2R_1009346_1015730,chr2R_1009346_1009487 chr2R_1009274_1009345 chr2R_1009058_1009157;chr2R_1015731_1015742 7.69 9.68 11.11 16.67 5.00 4.17 2.08 7.46 11.76 NA 5.00 12.77 12.50 6.45 3.33 7.35 3.45 10.53 11.90 5.77 6.67 NA 10.34 12.00 17.65 3.45 9.52 7.69 0.00 12.50 5.56 8.33 NA 8.00 4.55 NA 5.26 13.33 NA 3.70 6.67 10.00 10.71 5.56 6.67 15.79 10.71 11.11 6.25 9.09 3.45 7.69 5.56 5.56 4.65 11.54 9.09 13.64 K alternative_donor CaMKI,I_chr4_466377_467256,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,RI_chr4_467374_467424,RI_chr4_467482_467543,I_chr4_467862_471815,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_466275_467726;chr4_466377_467726;chr4_467662_467726;chr4_466798_467726;chr4_467273_467726 chr4_466592_467726 chr4_467727_467826;chr4_466269_466274 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 K multi_cassette DCAP,I_chr2R_6178643_6181126,RI_chr2R_6183553_6192101,I_chr2R_6188094_6192101 chr2R + chr2R_6180945_6182116 chr2R_6180945_6181126;chr2R_6181267_6181365;chr2R_6181439_6181654;chr2R_6181688_6182116 chr2R_6181127_6181266;chr2R_6181366_6181438;chr2R_6181655_6181687 chr2R_6180937_6180944;chr2R_6182117_6182270 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Lerp chr3R - chr3R_22688433_22688796;chr3R_22688433_22688772;chr3R_22688433_22688494 chr3R_22688433_22688824 chr3R_22688359_22688432;chr3R_22688825_22688828 9.52 NA NA 9.52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA Sp7 chr3R + chr3R_3588116_3588182 chr3R_3588116_3588178 chr3R_3587729_3588115;chr3R_3588183_3588287 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.03 100.00 100.00 100.00 K intron_retention klar,I_chr3L_462559_472609,CG34267,RI_chr3L_517594_539898 chr3L - chr3L_462559_505886 chr3L_462558_462559;chr3L_505886_505887 chr3L_462459_462558;chr3L_505887_506048 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.42 6.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA kuz,E_chr2L_13550294_13551106,CE_chr2L_13558833_13594255,I_chr2L_13636762_13637287 chr2L + chr2L_13558833_13609790 chr2L_13558833_13578200 chr2L_13558800_13558832 0.00 0.00 1.61 0.00 NA 2.38 0.00 0.78 0.00 NA 0.00 0.00 1.45 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 6.90 NA 0.00 1.47 NA 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA 2.78 NA 0.00 3.33 0.00 NA 0.00 NA 0.00 NA K jcn_only_AD CG4908 chr2L + chr2L_10222703_10223140 chr2L_10223060_10223140 chr2L_10223141_10224406;chr2L_10222658_10222702 29.55 NA NA NA NA NA NA NA 27.27 NA NA NA NA NA NA NA NA NA NA 31.82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG2656,noncoding_15110,I_chr3R_2978972_2979025 chr3R + chr3R_2971304_2976772 chr3R_2976717_2976772 chr3R_2976773_2976907 7.14 7.50 4.55 7.32 3.70 7.69 6.25 8.00 9.26 NA NA 7.35 3.70 10.26 2.04 0.00 11.11 6.45 16.00 12.64 4.55 4.08 11.76 8.06 5.00 3.33 3.23 8.33 11.76 0.00 2.50 13.04 7.14 15.09 4.00 3.70 6.52 16.67 12.50 7.46 4.55 14.06 14.71 6.06 8.89 2.78 12.50 10.42 6.12 7.14 3.23 6.06 5.66 10.64 6.25 6.67 10.99 4.92 K jcn_only_AA stau,I_chr2R_14010368_14010685 chr2R - chr2R_14007906_14007971 chr2R_14007909_14007971 chr2R_14007972_14008169;chr2R_14007529_14007905 79.55 85.71 79.55 81.43 76.32 76.00 77.59 80.95 83.84 NA 82.35 76.92 90.62 87.50 80.36 78.26 85.71 92.31 78.26 73.68 82.05 78.79 83.82 77.27 84.38 78.18 78.18 83.33 80.00 74.47 88.71 81.48 76.56 75.86 81.82 79.41 80.43 76.67 84.44 74.04 72.00 87.50 82.14 78.95 78.05 73.91 76.32 79.01 80.00 83.78 76.47 87.50 68.18 87.50 81.69 77.78 NA 71.05 K alternative_donor tlk chrX + chrX_3670471_3675687 chrX_3671394_3675687 chrX_3675688_3677592;chrX_3670092_3670470 100.00 94.12 100.00 97.14 100.00 93.75 97.22 97.06 100.00 100.00 100.00 96.88 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 89.66 96.88 95.00 94.74 94.12 95.24 100.00 100.00 100.00 95.00 100.00 100.00 97.56 94.44 100.00 100.00 100.00 100.00 95.83 100.00 100.00 94.74 92.59 100.00 100.00 100.00 96.88 97.78 100.00 96.55 95.00 100.00 100.00 95.65 100.00 100.00 100.00 K intron_retention F_chr3RHet_1879085_1900358,Alg-2 chr3RHet - chr3RHet_1895350_1898553 chr3RHet_1895349_1895350;chr3RHet_1898553_1898554 chr3RHet_1894737_1895349;chr3RHet_1898554_1898894 0.00 0.00 0.00 1.47 0.00 0.87 0.00 0.00 0.58 0.00 0.00 0.72 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.49 0.00 1.56 0.00 0.00 1.54 0.00 0.00 5.77 0.00 1.52 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Aats-ala,CG13392 chr2L - chr2L_8382524_8382588 chr2L_8382523_8382524;chr2L_8382588_8382589 chr2L_8381934_8382523;chr2L_8382589_8382787 0.00 0.00 0.00 NA NA 0.00 0.00 3.85 0.00 NA NA 10.00 NA NA 9.09 0.00 NA 0.00 NA 4.17 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA 0.00 0.00 0.00 7.69 5.56 NA 0.00 NA 0.00 0.00 NA 9.09 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA K alternative_acceptor CG6043,I_chr2L_13267973_13268086 chr2L + chr2L_13274377_13274690;chr2L_13274377_13274651 chr2L_13274377_13274642 chr2L_13274310_13274376;chr2L_13274691_13274770 37.50 NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.38 37.50 NA NA NA NA NA 33.33 NA NA NA 45.45 NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA 40.00 NA 30.77 33.33 NA NA NA NA NA NA NA K intron_retention CG8878 chr2R - chr2R_8034702_8034839 chr2R_8034701_8034702;chr2R_8034839_8034840 chr2R_8033798_8034701;chr2R_8034840_8036815 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG42596 chr2RHet + chr2RHet_1862145_1905052 chr2RHet_1862145_1862272 chr2RHet_1862028_1862144;chr2RHet_1905053_1905102 0.00 NA 0.00 0.00 NA NA 0.00 0.00 50.00 NA NA 50.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA 50.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 0.00 K intron_retention Clc,CG6951 chr3L + chr3L_20235768_20235884 chr3L_20235767_20235768;chr3L_20235884_20235885 chr3L_20235590_20235767;chr3L_20235885_20236816 1.99 3.51 1.83 6.77 2.15 2.92 4.49 1.00 1.92 2.11 2.25 1.89 0.88 1.42 1.67 0.82 2.33 1.33 1.32 2.03 1.03 1.74 4.00 2.26 4.76 1.52 6.00 8.57 18.60 1.38 2.42 2.16 1.69 2.13 1.05 4.07 2.54 4.03 0.00 0.82 6.67 1.88 3.03 1.99 0.49 1.43 0.79 1.54 1.39 3.89 2.96 3.53 0.00 0.74 2.02 2.06 1.63 1.71 K intron_retention cryptocephal,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21318417_21318484 chr2L_21318416_21318417;chr2L_21318484_21318485 chr2L_21318351_21318416;chr2L_21318485_21318548 5.26 0.00 0.00 14.29 11.43 5.00 5.08 8.86 1.19 15.62 0.00 11.34 0.00 0.00 9.80 2.50 8.89 6.38 7.32 2.60 3.12 0.00 18.75 15.69 20.00 3.92 21.43 14.77 0.00 16.28 2.08 0.00 8.51 14.04 0.00 0.00 19.61 0.00 18.03 14.08 12.82 3.03 8.89 2.33 0.00 20.37 27.03 4.17 0.00 26.32 5.26 0.00 20.00 0.00 7.55 4.35 16.67 0.00 K intron_retention bip2,RI_chr4_481674_482028,RI_chr4_481674_487126,RI_chr4_482358_482702,RI_chr4_483128_487126,RI_chr4_483144_483680,RI_chr4_486609_487126 chr4 - chr4_481674_482130 chr4_481673_481674;chr4_482130_482131 chr4_481574_481673;chr4_482131_482954 8.70 NA NA 29.41 NA NA NA 9.09 7.14 NA NA 7.14 NA 7.14 NA 12.00 NA NA NA 10.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 15.38 NA NA NA NA NA NA NA 8.70 NA NA NA NA NA 0.00 10.71 NA NA NA NA NA NA NA NA 0.00 N alternative_last_exon noncoding_22436,RpS6 chrX - chrX_7792960_7794835 chrX_7794323_7794835 chrX_7792310_7792959 chrX_7793498_7794322 chrX_7794836_7795040 100.00 100.00 100.00 99.98 100.00 100.00 100.00 100.00 99.99 100.00 100.00 100.00 99.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG11148,RI_chr4_886921_887162 chr4 - chr4_886921_887162;chr4_886921_887595;chr4_886921_887591 chr4_886921_887601 chr4_886821_886920;chr4_887602_887637 51.52 70.00 50.00 58.82 42.11 30.00 50.00 59.46 51.52 NA 71.43 51.85 50.00 38.89 70.83 47.62 47.37 66.67 63.64 54.29 69.23 NA 45.45 63.64 37.50 40.00 50.00 55.56 42.86 50.00 54.17 NA 47.62 62.50 NA 45.45 NA NA NA 47.83 NA 62.86 73.68 61.54 NA NA NA 57.69 44.44 14.29 63.64 NA NA NA 47.37 NA NA 57.14 K intron_retention CG1240,I_chr3L_2767143_2767236 chr3L + chr3L_2767143_2767216 chr3L_2767142_2767143;chr3L_2767216_2767217 chr3L_2767043_2767142;chr3L_2767217_2768437 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.60 0.68 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 2.45 4.48 0.69 0.00 0.00 0.00 0.00 3.03 0.00 0.40 0.00 0.00 0.83 0.93 0.67 0.00 0.00 0.00 0.00 0.50 0.00 0.35 0.00 0.00 0.00 0.76 0.00 0.00 0.39 0.00 1.22 K intron_retention CG4078,I_chrX_5645012_5645067,F_chrX_5650884_5651894 chrX + chrX_5645012_5645096 chrX_5645011_5645012;chrX_5645096_5645097 chrX_5644912_5645011;chrX_5645097_5645167 9.21 NA NA NA NA NA NA NA 14.29 NA NA 12.50 NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA 38.46 NA NA 12.50 NA NA 0.00 NA 11.76 NA 0.00 NA 0.00 NA NA NA 14.29 NA NA NA NA NA NA NA 6.67 K intron_retention tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_560576_560883 chr3R_560575_560576;chr3R_560883_560884 chr3R_560204_560575;chr3R_560884_561068 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.19 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor loco,I_chr3R_18448629_18449211,I_chr3R_18456329_18462522 chr3R - chr3R_18446578_18446672 chr3R_18446578_18446644 chr3R_18446509_18446577;chr3R_18446673_18446737 91.30 94.44 90.62 97.73 96.30 81.58 86.54 93.75 91.94 93.10 93.75 94.92 95.00 92.00 97.06 91.18 85.71 93.75 85.29 93.33 88.46 92.25 86.57 89.23 89.47 91.43 85.25 91.89 87.10 89.80 89.19 89.80 87.50 93.33 94.59 91.30 90.91 86.79 92.75 94.25 93.88 92.98 87.10 89.47 93.59 92.86 97.96 92.31 90.91 83.02 88.10 89.74 86.11 91.49 91.30 84.78 86.21 98.08 K jcn_only_AA smi35A,I_chr2L_14197568_14197656,I_chr2L_14197587_14197656,E_chr2L_14222082_14233893,RI_chr2L_14233579_14233647 chr2L - chr2L_14197568_14197656;chr2L_14197587_14197656 chr2L_14197294_14197656 chr2L_14197657_14197756;chr2L_14196927_14197293 98.33 97.87 100.00 93.62 94.29 93.94 90.00 96.30 100.00 100.00 90.48 98.57 94.23 100.00 100.00 98.21 94.87 87.88 97.30 94.44 100.00 95.65 100.00 98.21 100.00 100.00 98.46 94.59 100.00 100.00 100.00 100.00 98.59 100.00 100.00 100.00 98.53 96.61 98.33 98.55 95.00 98.63 100.00 97.78 95.65 100.00 96.67 90.38 97.14 100.00 96.55 90.24 100.00 96.30 94.64 100.00 95.83 100.00 K jcn_only_AA Dlic chrX + chrX_11048699_11049081 chrX_11048699_11049066 chrX_11048472_11048698;chrX_11049082_11049261 100.00 98.33 100.00 100.00 100.00 98.48 96.88 100.00 99.50 100.00 100.00 99.33 100.00 98.55 100.00 100.00 98.25 100.00 100.00 99.32 100.00 100.00 97.94 100.00 98.18 98.28 100.00 100.00 100.00 99.18 98.81 100.00 100.00 100.00 100.00 100.00 98.11 98.63 100.00 99.62 100.00 100.00 100.00 100.00 100.00 99.08 100.00 100.00 99.33 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 K intron_retention ctp,I_chrX_4582351_4582483,I_chrX_4582382_4585669,I_chrX_4582627_4585669,RI_chrX_4582706_4585629,RI_chrX_4582706_4592329 chrX + chrX_4582351_4585669 chrX_4582350_4582351;chrX_4585669_4585670 chrX_4582343_4582350;chrX_4585670_4585729 0.79 0.29 0.69 0.92 0.37 1.58 1.23 1.49 0.66 0.00 0.43 0.87 1.42 1.27 0.62 1.02 0.95 1.07 1.06 0.76 0.38 0.38 0.45 1.13 0.49 0.39 0.32 3.64 1.68 0.00 1.25 0.00 0.00 0.88 0.79 0.00 0.81 0.00 0.91 0.42 1.94 0.49 1.08 0.45 0.82 0.52 0.00 0.56 1.31 1.45 1.18 1.05 0.95 0.95 1.34 0.28 0.72 0.55 K alternative_acceptor CG3907,I_chr2R_19909065_19909249,I_chr2R_19909692_19909755 chr2R - chr2R_19909608_19909755;chr2R_19909635_19909755 chr2R_19909692_19909755 chr2R_19909756_19909779;chr2R_19909592_19909607 50.00 NA NA 40.00 NA NA 45.45 42.86 50.00 NA NA 54.55 80.00 NA 50.00 38.46 NA NA 75.00 84.62 NA 62.50 NA NA NA 71.43 NA NA NA NA 57.14 33.33 40.00 45.45 NA NA NA NA NA 33.33 50.00 55.56 50.00 NA 42.86 NA NA NA 58.33 NA NA NA NA NA 42.86 75.00 50.00 28.57 K cassette Map205,I_chr3R_27884868_27890856,I_chr3R_27891135_27892050 chr3R - chr3R_27884868_27892050 chr3R_27884868_27887161;chr3R_27887234_27892050 chr3R_27887162_27887233 chr3R_27884768_27884867;chr3R_27892051_27892150 0.91 1.25 1.05 1.04 1.14 1.04 0.00 0.47 1.33 2.08 0.00 1.23 1.27 1.02 0.86 0.55 0.88 0.93 0.81 1.97 0.00 2.04 0.81 0.00 0.00 0.85 0.00 1.27 1.69 1.25 1.06 0.00 0.00 0.91 1.61 1.45 0.00 1.32 0.00 0.99 0.00 0.44 0.96 0.85 0.00 1.92 1.82 1.41 0.50 2.70 0.87 1.03 0.00 0.00 0.88 0.00 0.00 2.27 K jcn_only_AD CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042891_5042960;chr2L_5042891_5043077 chr2L_5042891_5042983 chr2L_5042835_5042890;chr2L_5043078_5043083 10.53 10.28 10.81 13.22 11.94 16.48 9.04 8.97 11.16 13.25 10.00 11.56 6.67 6.80 10.99 9.91 15.85 11.25 16.26 9.09 18.57 7.69 6.82 8.40 8.91 12.50 6.74 16.49 13.76 12.61 12.00 10.00 15.70 10.84 7.14 13.40 5.49 10.67 5.22 15.52 8.59 6.51 12.50 7.48 8.57 12.50 6.48 6.81 12.81 9.52 10.29 12.94 11.29 10.53 15.62 8.41 3.36 10.47 K alternative_donor CG7324,I_chr3L_21335553_21335702,I_chr3L_21340055_21342206 chr3L - chr3L_21335553_21336030 chr3L_21335553_21335702 chr3L_21335453_21335552;chr3L_21336031_21336197 1.64 0.00 3.12 4.26 0.00 0.00 2.16 3.03 2.50 0.00 1.89 1.44 3.39 1.64 0.00 5.71 3.23 1.82 1.59 1.60 2.22 11.90 1.30 1.37 0.00 1.59 0.00 3.33 2.00 2.56 2.90 0.00 2.78 0.94 2.13 2.00 1.37 2.04 1.85 1.30 4.35 0.81 2.00 1.32 7.69 0.00 0.00 2.70 0.83 2.04 1.45 1.75 4.00 0.00 1.18 0.00 0.00 0.00 K intron_retention CG7630,RI_chr3L_17418607_17418678,noncoding_13185,I_chr3L_17418741_17418811 chr3L + chr3L_17418741_17419009 chr3L_17418740_17418741;chr3L_17419009_17419010 chr3L_17418679_17418740;chr3L_17419010_17419135 0.00 0.00 0.00 0.30 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG33969,I_chr3L_20390576_20390678 chr3L - chr3L_20386317_20386378 chr3L_20386316_20386317;chr3L_20386378_20386379 chr3L_20386251_20386316;chr3L_20386379_20386446 51.19 NA NA 62.50 30.77 NA 35.29 36.84 23.53 NA NA 61.54 72.73 NA NA 58.82 NA NA 41.67 57.14 36.36 55.56 54.55 NA NA NA 35.71 55.56 47.06 46.67 40.00 61.54 59.09 42.86 NA NA 50.00 NA 42.86 50.00 52.63 53.33 NA 60.00 54.55 54.55 NA 52.38 40.00 NA NA 45.45 NA NA 60.00 NA NA 50.00 N alternative_acceptor CG13900,I_chr3L_830745_830907 chr3L - chr3L_830745_830907;chr3L_830715_830907;chr3L_830814_830907 chr3L_830729_830907 chr3L_830908_831007;chr3L_830702_830714 96.97 93.94 96.08 89.71 100.00 95.35 90.48 97.73 98.95 86.36 97.30 96.15 97.56 95.56 96.49 97.10 97.56 100.00 100.00 95.10 95.45 90.38 96.23 91.84 100.00 100.00 96.92 65.71 95.65 96.77 97.95 94.29 94.12 94.25 88.89 100.00 98.57 100.00 98.51 94.83 100.00 94.62 100.00 100.00 96.97 92.59 100.00 91.89 97.22 100.00 96.97 100.00 100.00 100.00 98.21 100.00 100.00 90.24 K intron_retention CG9249,CG9247 chr2L - chr2L_21157648_21157710 chr2L_21157647_21157648;chr2L_21157710_21157711 chr2L_21157365_21157647;chr2L_21157711_21158243 4.92 6.90 7.69 5.26 8.33 0.00 2.27 5.00 6.78 7.69 0.00 16.22 0.00 9.09 0.00 10.71 NA 4.00 5.26 4.84 10.53 NA 0.00 0.00 8.33 7.69 10.00 0.00 5.00 0.00 14.81 0.00 NA 13.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 15.79 0.00 0.00 0.00 4.65 NA 8.82 5.71 0.00 NA 3.70 0.00 6.67 5.71 5.88 25.00 K intron_retention par-1,I_chr2R_15359242_15360944,I_chr2R_15359251_15360944,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15360685_15360944 chr2R_15360684_15360685;chr2R_15360944_15360945 chr2R_15360674_15360684;chr2R_15360945_15360953 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 1.41 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754284_15754777 chrX_15754283_15754284;chrX_15754777_15754778 chrX_15754256_15754283;chrX_15754778_15755186 17.65 NA 17.65 38.46 NA 25.00 11.11 18.18 28.12 NA NA 11.48 17.24 33.33 19.05 15.38 NA NA 11.11 11.54 NA NA 11.11 21.74 NA 16.67 46.67 NA NA 17.65 9.09 NA 12.50 9.09 19.05 13.79 27.78 NA 30.77 22.22 NA 20.00 11.76 NA NA 22.22 35.71 5.56 9.52 NA 25.00 22.22 NA NA 10.53 NA NA NA K jcn_only_AA CG32138 chr3L + chr3L_14062497_14063021 chr3L_14062497_14062991 chr3L_14062186_14062496;chr3L_14063022_14063741 93.55 93.10 87.50 NA NA 95.00 94.12 95.00 95.77 85.71 NA 98.23 96.88 NA 90.32 93.55 100.00 83.64 96.67 93.85 95.24 97.30 97.56 85.71 89.29 94.59 96.00 NA NA NA 94.23 95.45 90.91 95.65 NA 100.00 93.75 90.91 97.14 82.14 82.05 87.30 85.71 93.94 77.42 93.10 88.00 88.57 95.45 91.11 87.50 NA 96.00 NA 90.48 93.55 87.50 87.10 K jcn_only_AA CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20824494_20826632;chr2L_20824494_20825470;chr2L_20824494_20825271 chr2L_20824494_20825664 chr2L_20824482_20824493 8.00 NA NA 0.00 NA NA NA 16.00 NA NA NA NA NA NA NA 9.09 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA 8.00 NA NA NA 10.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG9086,CEI_chrX_16859981_16861527,I_chrX_16861895_16862053 chrX - chrX_16861753_16862542 chrX_16861895_16862542 chrX_16862543_16862684;chrX_16861528_16861752 82.93 87.10 82.93 49.21 71.43 70.97 88.68 82.26 84.62 87.50 85.71 84.21 77.27 81.82 75.00 85.90 76.47 77.78 81.40 85.00 83.33 100.00 75.51 83.33 NA 79.17 83.33 NA NA 70.00 83.61 NA NA 81.43 96.67 94.44 78.57 NA 90.48 80.49 NA 86.54 80.56 96.00 NA 95.00 70.00 87.18 85.15 NA 69.23 72.73 NA NA 82.93 NA NA NA K jcn_only_AD CG2064 chr2R + chr2R_3553522_3553650 chr2R_3553532_3553650 chr2R_3553651_3553914;chr2R_3553444_3553521 0.59 0.92 0.00 1.20 0.99 0.48 0.55 0.54 0.32 0.00 2.11 0.44 0.00 0.00 0.45 1.75 0.00 1.22 0.00 0.59 1.30 0.77 0.90 1.70 0.44 0.38 1.14 0.24 0.59 1.46 1.22 0.95 0.49 1.12 0.87 0.35 0.00 0.42 0.70 0.66 0.43 0.49 2.16 0.45 1.83 0.59 0.36 0.58 0.48 0.32 1.82 0.56 1.55 1.27 0.83 1.30 0.68 1.21 K intron_retention Syx4,I_chrX_2635555_2635621,I_chrX_2636831_2636971 chrX - chrX_2635865_2635930 chrX_2635864_2635865;chrX_2635930_2635931 chrX_2635622_2635864;chrX_2635931_2636024 0.00 0.00 3.03 0.00 0.00 1.72 1.79 0.00 2.44 NA 0.00 3.61 0.00 0.00 0.00 3.28 3.92 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 5.56 0.00 2.50 0.00 0.00 3.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 4.27 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 K jcn_only_AD milt,I_chr2L_7038283_7040472,I_chr2L_7038944_7040472,I_chr2L_7051093_7051366 chr2L + chr2L_7038279_7040472 chr2L_7038944_7040472 chr2L_7040473_7040572;chr2L_7038273_7038278 0.00 0.00 9.52 0.00 4.55 4.55 8.33 0.00 0.00 NA 0.00 2.13 0.00 0.00 0.00 0.00 NA 0.00 3.03 0.00 NA 9.38 2.56 3.23 0.00 NA 3.70 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 2.38 0.00 0.00 NA 0.00 NA 1.69 0.00 NA 0.00 NA NA NA 0.00 NA NA 2.56 K intron_retention l(1)G0196,I_chrX_21900456_21904601 chrX + chrX_21898150_21898212 chrX_21898149_21898150;chrX_21898212_21898213 chrX_21897878_21898149;chrX_21898213_21898384 25.00 41.67 14.29 62.50 25.00 16.67 33.33 28.57 25.81 NA NA 16.67 NA 12.50 12.50 35.00 13.33 NA 37.50 10.53 NA 47.06 44.00 31.25 NA 35.71 61.90 NA NA NA 22.22 NA NA 25.00 NA NA 22.22 NA NA 29.41 NA 21.74 NA 25.00 NA NA NA NA 25.00 NA 60.00 NA NA NA 13.04 NA NA NA K jcn_only_AD vib,RI_chr3R_15051793_15051920,RI_chr3R_15051793_15052186 chr3R - chr3R_15051793_15052186;chr3R_15051793_15052202 chr3R_15051793_15051920 chr3R_15051737_15051792;chr3R_15052203_15052286 3.90 3.45 5.62 6.74 6.76 7.33 8.06 8.25 7.85 11.11 4.63 3.55 4.40 8.47 2.29 6.76 7.50 1.92 6.71 3.90 5.47 6.59 5.21 2.62 3.77 2.63 2.43 6.67 2.30 3.52 1.35 7.89 8.64 9.81 4.62 1.92 1.57 1.77 2.21 3.49 3.85 6.79 6.32 3.82 2.42 5.61 2.14 3.33 5.69 1.25 2.65 2.86 1.86 2.10 4.09 2.52 2.68 4.96 K jcn_only_AA Axs,RI_chrX_16575605_16575790,RI_chrX_16575870_16575942 chrX - chrX_16575605_16575942 chrX_16575870_16575942 chrX_16575943_16576042;chrX_16575505_16575604 3.39 3.45 0.00 7.69 0.00 0.00 5.45 0.00 1.41 NA 0.00 4.65 15.38 NA 3.23 0.00 3.70 0.00 2.86 0.00 0.00 1.79 0.00 10.53 NA 0.00 22.58 NA 3.33 4.17 2.50 NA NA 3.92 NA 12.50 5.41 10.00 0.00 2.50 NA 1.82 NA 6.82 4.00 16.22 5.26 NA 5.56 2.86 4.44 0.00 0.00 20.00 6.25 3.85 10.71 NA K jcn_only_AD Pp4-19C,I_chrX_20293932_20294672,RI_chrX_20293980_20294069,REI_chrX_20294004_20294672 chrX - chrX_20293980_20294672 chrX_20293980_20294069 chrX_20293904_20293979;chrX_20294673_20294772 0.81 0.64 1.52 0.00 0.00 2.96 1.15 0.81 0.52 0.00 1.33 0.47 1.49 1.08 0.00 0.81 1.37 4.76 0.86 0.73 0.00 1.31 0.43 1.84 0.00 0.84 0.62 0.75 3.45 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.17 0.00 1.43 0.00 2.31 1.30 4.55 2.52 1.45 0.00 1.39 2.08 0.94 0.00 1.08 2.88 0.79 0.70 0.00 1.16 0.00 K intron_retention RI_chr2L_6471715_6473716,CG9536 chr2L - chr2L_6474652_6474707 chr2L_6474651_6474652;chr2L_6474707_6474708 chr2L_6474349_6474651;chr2L_6474708_6475270 71.88 64.91 75.00 82.50 54.55 77.78 78.95 79.10 73.68 70.00 72.41 55.00 64.71 66.67 77.50 63.24 88.00 77.14 76.19 72.63 71.88 29.51 80.56 72.00 84.78 85.71 69.64 51.61 78.12 61.54 68.18 66.67 67.35 68.24 67.50 92.31 66.67 65.00 83.33 63.95 70.59 77.91 73.53 57.58 83.72 77.19 60.71 68.42 73.86 67.21 71.93 70.27 82.00 67.80 77.08 62.16 66.67 74.47 K cassette scro chr3LHet + chr3LHet_207763_211628 chr3LHet_207763_209155;chr3LHet_209625_211628 chr3LHet_209156_209624 chr3LHet_207755_207762;chr3LHet_211629_211806 100.00 NA NA 100.00 NA NA 100.00 NA 83.33 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA 100.00 87.50 NA NA NA NA NA NA NA NA K jcn_only_AD BEAF-32,I_chr2R_10658570_10659304,noncoding_6875 chr2R + chr2R_10658570_10659304 chr2R_10659148_10659304 chr2R_10659305_10659323;chr2R_10658497_10658569 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 100.00 98.75 100.00 100.00 100.00 100.00 98.39 100.00 100.00 K intron_retention CG5174,F_chr2R_14309059_14311473 chr2R + chr2R_14312582_14312844 chr2R_14312581_14312582;chr2R_14312844_14312845 chr2R_14312540_14312581;chr2R_14312845_14312913 6.06 14.29 6.25 0.00 7.69 3.85 6.82 5.77 6.85 0.00 4.76 12.77 0.00 7.41 10.34 6.38 5.26 NA 3.57 5.56 0.00 NA 8.89 0.00 NA 0.00 8.70 22.73 0.00 12.50 0.00 0.00 5.00 4.26 6.25 20.00 13.79 3.45 14.29 14.29 0.00 6.82 0.00 9.09 0.00 4.76 12.00 7.69 7.81 12.00 13.51 5.56 5.88 4.35 5.00 6.25 8.11 0.00 K intron_retention CG5261,I_chr2L_7428611_7428877 chr2L + chr2L_7429516_7429581 chr2L_7429515_7429516;chr2L_7429581_7429582 chr2L_7429167_7429515;chr2L_7429582_7429684 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG5745,I_chr3R_16928870_16929143 chr3R + chr3R_16928641_16929149 chr3R_16928641_16929143 chr3R_16928445_16928640;chr3R_16929150_16929243 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 90.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 94.12 NA 100.00 100.00 100.00 100.00 90.91 100.00 92.86 100.00 100.00 100.00 95.24 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K alternative_donor tkv chr2L - chr2L_5241507_5242385 chr2L_5241507_5242218 chr2L_5241369_5241506;chr2L_5242386_5242606 71.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 71.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG15099 chr2R - chr2R_14725074_14725138 chr2R_14725073_14725074;chr2R_14725138_14725139 chr2R_14724985_14725073;chr2R_14725139_14725207 1.35 1.48 0.00 1.73 3.10 1.45 0.54 0.00 1.79 3.23 3.15 1.65 3.12 1.59 0.58 2.90 0.00 4.91 0.65 4.46 3.28 0.99 3.07 1.30 2.91 0.00 3.94 8.45 0.00 1.80 1.42 0.00 0.00 0.44 0.00 0.00 2.87 1.80 1.12 1.11 0.82 1.68 0.85 1.55 1.87 1.47 0.00 0.49 1.12 0.65 1.12 1.35 0.00 2.13 1.03 2.45 1.06 0.34 K cassette Dscam,I_chr2R_3236481_3237105,I_chr2R_3236481_3238462,CEF_chr2R_3236481_3238678,F_chr2R_3236481_3241070,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3236481_3249222 chr2R_3236481_3236897;chr2R_3237019_3249222 chr2R_3236898_3237018 chr2R_3236381_3236480;chr2R_3249223_3249322 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CycT,I_chr3L_17548631_17550687 chr3L - chr3L_17546323_17546388 chr3L_17546322_17546323;chr3L_17546388_17546389 chr3L_17545845_17546322;chr3L_17546389_17547978 94.20 97.56 89.74 100.00 100.00 96.88 98.08 98.53 93.67 94.74 96.55 90.91 95.24 97.30 97.96 97.87 95.00 90.62 94.44 97.37 93.94 96.20 90.14 88.33 100.00 97.62 92.54 96.72 93.83 94.20 95.65 89.47 91.30 94.20 97.62 92.45 89.71 90.00 94.64 94.57 87.93 92.55 94.29 95.65 88.33 98.33 90.00 89.61 95.51 91.07 94.83 94.12 83.87 90.32 89.66 83.33 87.10 81.61 K alternative_acceptor rl,I_chr2RHet_199154_207044,RI_chr2RHet_203476_203577,RI_chr2RHet_203592_207044,I_chr2RHet_232696_247338,RI_chr2RHet_240197_247338 chr2RHet + chr2RHet_198817_198964;chr2RHet_198817_198973 chr2RHet_198817_198981 chr2RHet_198804_198816;chr2RHet_198982_199153 7.69 NA 11.11 3.12 20.00 11.11 11.36 2.78 7.14 NA NA 3.85 10.00 7.69 NA 3.23 14.29 11.11 5.88 4.35 16.67 NA 0.00 12.50 14.29 0.00 6.67 NA NA 11.11 0.00 NA NA 10.34 0.00 7.14 11.11 NA 9.09 NA NA 0.00 NA NA NA 11.11 0.00 NA 3.45 14.29 0.00 8.33 NA NA 0.00 NA NA 14.29 N multi_cassette Hr78,I_chr3L_21490089_21490390,CG33214 chr3L - chr3L_21488969_21490390 chr3L_21488969_21489526;chr3L_21489842_21489919;chr3L_21489978_21490390 chr3L_21489527_21489841;chr3L_21489920_21489977 chr3L_21488699_21488968;chr3L_21490391_21490490 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 74.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG34123,I_chr2R_11159045_11159622,RI_chr2R_11160894_11162043,I_chr2R_11167854_11168411 chr2R - chr2R_11155710_11155789 chr2R_11155709_11155710;chr2R_11155789_11155790 chr2R_11155588_11155709;chr2R_11155790_11155889 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG1646,I_chr3R_24640561_24640869,I_chr3R_24641816_24641874 chr3R + chr3R_24641449_24641497 chr3R_24641448_24641449;chr3R_24641497_24641498 chr3R_24641204_24641448;chr3R_24641498_24641682 98.55 100.00 100.00 100.00 97.67 95.52 98.59 100.00 97.81 96.08 98.33 99.22 97.62 98.55 100.00 98.86 100.00 100.00 98.61 98.18 100.00 99.21 97.22 100.00 98.25 98.63 98.28 98.21 85.71 96.69 98.44 98.68 98.94 99.11 98.81 92.50 97.89 98.51 98.94 93.84 100.00 99.33 100.00 96.26 96.36 98.50 100.00 94.71 98.68 100.00 97.50 98.00 98.48 97.92 100.00 97.53 98.67 96.79 K intron_retention caz,noncoding_24110,RI_chrX_16183147_16183258,RI_chrX_16183356_16185973 chrX + chrX_16183147_16183258 chrX_16183146_16183147;chrX_16183258_16183259 chrX_16183060_16183146;chrX_16183259_16183355 97.83 94.44 92.98 91.07 97.96 100.00 97.83 96.05 96.23 98.15 92.31 97.06 97.44 97.96 94.20 100.00 100.00 98.33 100.00 97.41 95.56 100.00 99.19 96.85 96.97 97.78 94.44 90.14 91.89 97.50 99.07 98.18 97.98 97.98 100.00 95.38 97.62 99.02 96.74 98.20 100.00 97.89 98.00 98.44 97.26 97.12 98.94 100.00 99.19 96.43 96.77 95.77 98.57 98.59 98.78 95.56 96.15 99.04 K jcn_only_AD F_chr2L_5045484_5046146,CG14040,His3_3A chr2L + chr2L_5052994_5053238 chr2L_5053169_5053238 chr2L_5053239_5053356;chr2L_5052846_5052993 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 97.67 100.00 100.00 K alternative_acceptor msps,I_chr3R_11877071_11877796 chr3R + chr3R_11885098_11885206;chr3R_11885098_11885182 chr3R_11885098_11885185 chr3R_11884965_11885097;chr3R_11885207_11885406 4.17 0.00 20.00 5.26 8.33 10.00 0.00 9.09 5.13 0.00 7.14 3.85 16.67 10.00 0.00 6.67 12.50 12.50 0.00 2.78 0.00 4.00 0.00 3.23 0.00 10.00 4.55 0.00 6.25 5.26 0.00 7.14 5.88 4.00 0.00 4.55 2.17 0.00 0.00 5.88 21.43 4.17 10.00 0.00 4.55 4.76 3.57 13.04 3.57 4.17 3.33 4.76 5.88 0.00 0.00 3.70 0.00 9.52 K alternative_donor I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17198803_17199052;chr3R_17198803_17200781 chr3R_17198803_17199019 chr3R_17198703_17198802;chr3R_17200782_17200881 0.00 0.00 0.00 3.57 0.00 0.00 4.55 4.55 2.63 0.00 0.00 3.85 0.00 6.25 0.00 8.70 0.00 0.00 0.00 2.13 0.00 0.00 0.00 4.35 0.00 3.70 5.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 6.45 0.00 4.17 0.00 5.56 0.00 4.17 0.00 0.00 0.00 K intron_retention l(1)G0255,CG4095 chrX + chrX_6572650_6573858 chrX_6572649_6572650;chrX_6573858_6573859 chrX_6572590_6572649;chrX_6573859_6573990 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 5.41 0.98 2.94 0.00 0.00 0.00 6.67 0.00 0.00 2.61 0.00 4.44 3.19 1.90 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 1.39 0.00 0.00 2.78 0.00 0.00 1.08 0.00 0.00 2.76 0.00 3.64 3.17 2.60 0.91 0.00 5.21 0.00 0.00 1.54 0.00 0.00 0.00 0.00 2.50 2.22 K jcn_only_AA CG17494 chr2L + chr2L_22471985_22472552;chr2L_22471985_22472618 chr2L_22471985_22472623 chr2L_22471978_22471984;chr2L_22472624_22473865 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 2.33 0.00 0.46 0.00 2.38 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.49 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.47 0.98 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Qm,RI_chr3L_23084218_23087783,REI_chr3L_23086979_23087779,RE_chr3L_23086979_23087782,I_chr3L_23087712_23087783,E_chr3L_23087825_23087922,RI_chr3L_23087947_23088093 chr3L - chr3L_23086979_23087783 chr3L_23086979_23087779 chr3L_23086879_23086978;chr3L_23087784_23087824 0.04 0.00 0.06 0.09 0.00 0.03 0.04 0.06 0.06 0.11 0.08 0.05 0.09 0.09 0.02 0.05 0.00 0.00 0.02 0.02 0.00 0.05 0.03 0.00 0.00 0.00 0.08 0.24 0.23 0.04 0.03 0.03 0.10 0.04 0.04 0.17 0.00 0.00 0.03 0.04 0.06 0.03 0.00 0.00 0.06 0.06 0.00 0.04 0.04 0.13 0.05 0.00 0.06 0.02 0.05 0.02 0.08 0.03 K alternative_donor sav chr3R - chr3R_18885706_18886108 chr3R_18885706_18886093 chr3R_18884752_18885705;chr3R_18886109_18886988 81.66 83.33 NA NA NA NA NA NA 76.47 90.00 NA 76.92 NA NA 87.50 NA NA NA NA 73.68 NA 73.33 93.33 78.26 88.89 NA 85.71 77.78 75.00 71.43 NA NA 100.00 NA 90.00 100.00 86.67 78.95 86.21 69.23 NA 71.43 NA 90.00 71.43 100.00 87.50 NA 80.00 90.91 66.67 85.71 85.71 76.92 NA 80.00 77.78 NA K jcn_only_AD sar1,I_chr3R_18184656_18185246,I_chr3R_18185015_18185246,I_chr3R_18185148_18185246 chr3R + chr3R_18184656_18185246;chr3R_18184351_18185246;chr3R_18185148_18185246 chr3R_18185015_18185246 chr3R_18185247_18185346;chr3R_18184285_18184350 0.33 0.27 0.23 0.00 0.70 0.28 0.62 0.38 0.58 1.08 1.16 0.80 0.64 0.00 0.22 0.49 0.00 0.00 0.00 0.70 0.62 0.60 0.43 0.40 1.65 0.31 0.24 0.86 1.15 0.00 0.24 0.34 0.17 0.58 0.00 0.00 0.48 0.75 0.33 0.00 0.26 0.59 0.37 0.00 0.45 0.17 0.00 0.36 0.47 1.01 0.20 0.80 0.00 0.22 0.25 0.23 0.19 0.23 K intron_retention key,I_chr2R_20674567_20674813,I_chr2R_20674654_20674897,RI_chr2R_20676692_20676888 chr2R - chr2R_20674654_20674813 chr2R_20674653_20674654;chr2R_20674813_20674814 chr2R_20674554_20674653;chr2R_20674814_20674879 2.75 3.92 9.30 2.90 6.90 6.25 3.03 5.48 6.49 NA 3.33 4.88 7.69 5.13 4.44 3.70 0.00 0.00 0.00 4.44 0.00 0.00 2.60 0.00 0.00 0.00 3.70 5.71 6.67 0.00 12.20 0.00 0.00 8.20 0.00 6.67 2.27 4.55 0.00 3.39 0.00 4.29 6.25 1.54 0.00 0.00 0.00 0.00 5.41 7.46 0.00 2.33 0.00 0.00 4.88 1.82 2.33 0.00 K jcn_only_AA CG3156 chrX + chrX_383110_383175 chrX_383110_383161 chrX_382907_383109;chrX_383176_383449 3.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 4.00 3.85 NA NA NA NA NA NA NA NA NA N alternative_donor Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11837971_11838672;chr2R_11837971_11838662 chr2R_11837971_11838112 chr2R_11837919_11837970;chr2R_11838673_11838762 2.56 4.17 3.33 3.90 2.13 1.64 4.35 3.45 4.04 1.45 2.08 3.12 2.63 4.35 3.39 3.45 4.76 2.00 2.50 3.16 4.26 5.62 1.75 2.50 1.56 4.17 2.08 3.23 2.44 2.38 2.60 1.79 2.67 2.74 1.72 2.82 1.37 1.47 2.14 2.86 3.17 2.02 2.78 2.33 1.10 2.30 1.37 2.56 2.11 2.08 2.67 2.22 2.63 1.96 3.23 1.72 2.33 3.12 K alternative_last_exon CG6608,I_chr3R_6706829_6707624 chr3R - chr3R_6706829_6707624 chr3R_6707526_6707624 chr3R_6705287_6706828 chr3R_6707285_6707525 chr3R_6707625_6707724 97.14 95.35 97.50 97.50 96.43 91.30 97.18 97.78 98.57 98.46 93.10 93.75 93.33 96.67 94.29 100.00 95.65 97.30 93.33 97.40 100.00 98.17 97.80 95.89 97.37 96.67 93.94 97.50 98.46 100.00 97.14 97.62 98.86 97.92 97.44 97.96 94.12 94.64 91.80 98.72 100.00 96.67 95.45 97.67 98.00 96.72 95.00 100.00 96.43 93.10 94.83 96.23 96.77 94.44 97.30 93.62 91.67 100.00 K cassette Mrtf,CEI_chr3L_2724578_2724676 chr3L - chr3L_2724059_2728419 chr3L_2724059_2724676;chr3L_2724743_2728419 chr3L_2724677_2724742 chr3L_2723463_2724058;chr3L_2728420_2728560 100.00 100.00 100.00 90.00 100.00 100.00 88.89 100.00 100.00 NA 100.00 92.31 100.00 NA 90.00 100.00 100.00 100.00 100.00 93.75 NA 88.89 93.33 90.00 NA 87.50 100.00 100.00 NA 100.00 100.00 NA 90.91 100.00 100.00 100.00 93.75 100.00 92.86 100.00 NA 87.50 NA NA NA NA NA 87.50 90.00 NA 100.00 100.00 NA NA 100.00 NA NA NA K intron_retention CG1702 chrX + chrX_20339721_20340062 chrX_20339720_20339721;chrX_20340062_20340063 chrX_20339574_20339720;chrX_20340063_20340485 0.00 0.00 0.00 8.33 0.00 4.17 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 4.44 0.00 0.00 0.00 21.74 0.00 0.00 0.00 2.63 5.26 6.25 3.85 0.00 0.00 0.00 2.56 0.00 2.04 5.56 3.66 0.00 0.00 0.00 0.00 2.74 3.45 0.00 0.00 1.47 0.00 0.00 0.00 1.39 3.28 0.00 0.00 2.47 0.00 1.72 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389272_2395659 chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2395659 chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664 chrX_2389172_2389271;chrX_2395660_2395759 33.33 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention wun2,I_chr2R_5304606_5304660 chr2R + chr2R_5304588_5304660 chr2R_5304587_5304588;chr2R_5304660_5304661 chr2R_5304506_5304587;chr2R_5304661_5304760 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.70 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.47 0.00 0.52 0.00 0.00 1.31 0.00 0.00 0.00 0.69 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.41 1.20 0.00 0.00 0.91 0.00 0.00 0.85 0.51 0.00 0.70 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Gel,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_64488_64540 chr3R_64487_64488;chr3R_64540_64541 chr3R_64292_64487;chr3R_64541_65687 0.56 0.73 0.54 0.88 0.53 0.21 0.66 0.79 1.11 0.78 0.92 1.06 0.80 1.00 0.31 0.85 0.97 0.71 0.37 0.40 0.66 2.00 0.72 0.50 0.60 0.88 1.38 0.00 0.40 0.53 1.54 0.00 0.35 0.42 1.10 1.26 0.73 0.89 0.78 0.75 0.51 0.49 0.00 0.56 0.25 0.18 0.25 0.31 0.38 0.52 0.32 2.01 0.00 0.55 0.30 0.63 0.42 0.30 K intron_retention CG14741 chr3R - chr3R_7900593_7900895 chr3R_7900592_7900593;chr3R_7900895_7900896 chr3R_7900525_7900592;chr3R_7900896_7901144 81.25 81.25 87.50 92.17 86.96 82.86 88.46 91.74 90.70 73.33 96.77 81.90 70.00 86.00 87.27 86.07 88.89 91.23 90.62 82.88 86.79 76.92 76.27 65.00 86.21 84.21 83.33 53.85 83.10 68.52 78.69 80.95 55.88 80.46 66.67 71.67 61.19 76.09 82.35 76.92 66.67 88.52 89.80 77.46 59.57 75.76 69.23 64.77 85.94 80.00 85.42 85.19 67.44 69.23 85.48 76.92 69.44 51.28 K intron_retention Dystrophin chr3R + chr3R_15418846_15419517 chr3R_15418845_15418846;chr3R_15419517_15419518 chr3R_15418545_15418845;chr3R_15419518_15419569 22.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette MBD-like chr3R + chr3R_5385754_5386644 chr3R_5385754_5385996;chr3R_5386336_5386644 chr3R_5385997_5386335 chr3R_5385501_5385753;chr3R_5386645_5387357 11.43 15.69 13.33 14.93 5.71 7.32 6.00 9.09 7.76 17.39 2.50 10.71 12.00 11.11 6.00 12.20 6.67 5.13 2.17 6.02 5.88 28.33 12.79 13.58 15.56 15.15 11.43 35.94 19.05 10.94 8.82 11.94 17.58 7.04 15.38 23.26 9.09 11.63 15.12 16.30 15.71 9.78 8.33 20.00 22.00 10.53 11.76 17.28 5.50 13.79 10.94 9.62 9.52 14.55 10.81 11.11 7.77 11.65 K alternative_acceptor RpL35,I_chrX_5566913_5567030,I_chrX_5567168_5567220 chrX + chrX_5566909_5567036 chrX_5566909_5567030 chrX_5566840_5566908;chrX_5567037_5567130 99.89 99.91 99.84 99.94 99.86 99.90 99.86 99.84 99.89 100.00 99.88 99.87 99.90 100.00 100.00 99.96 100.00 99.92 100.00 99.80 99.67 99.82 99.70 99.77 100.00 99.92 99.89 99.58 99.82 99.89 99.78 99.91 99.91 100.00 99.88 99.91 100.00 100.00 99.73 99.93 100.00 99.95 99.89 99.92 99.94 99.85 99.92 99.78 99.74 99.91 99.92 100.00 99.76 99.87 99.87 99.73 99.83 99.79 K jcn_only_AD shi,RI_chrX_15786633_15786860,RE_chrX_15793108_15795563 chrX + chrX_15786474_15786860;chrX_15786603_15786860;chrX_15786285_15786860;chrX_15786615_15786860;chrX_15786394_15786860 chrX_15786200_15786860 chrX_15786861_15786960;chrX_15786192_15786199 3.70 6.67 3.12 8.62 0.00 0.00 2.02 7.79 7.27 NA 8.33 1.85 3.92 4.44 5.41 2.90 4.00 NA 7.69 4.17 2.70 NA 2.27 3.33 0.00 10.71 0.00 NA NA 2.44 5.88 NA 2.38 10.23 0.00 0.00 4.35 0.00 NA 5.88 3.70 7.46 2.78 7.32 NA 5.71 NA 5.77 5.71 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K intron_retention CG6325 chr3R - chr3R_6230044_6230107 chr3R_6230043_6230044;chr3R_6230107_6230108 chr3R_6228636_6230043;chr3R_6230108_6230807 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RN-tre chr2R - chr2R_9873601_9875877 chr2R_9873600_9873601;chr2R_9875877_9875878 chr2R_9873495_9873600;chr2R_9875878_9875942 6.25 2.44 6.25 7.91 3.33 7.58 11.22 5.69 6.57 3.28 4.44 9.23 4.00 11.48 9.30 16.18 11.76 6.17 6.49 3.87 12.00 4.35 5.10 4.65 8.16 5.80 2.50 11.67 14.08 5.97 7.53 6.41 3.75 5.88 3.33 4.23 5.62 2.70 4.50 7.02 5.38 6.94 8.47 8.51 1.27 7.14 6.25 8.42 7.56 11.48 4.59 1.89 8.33 3.57 6.45 3.70 6.56 7.69 K intron_retention aru,I_chr2L_864795_867505 chr2L - chr2L_862499_862562 chr2L_862498_862499;chr2L_862562_862563 chr2L_862319_862498;chr2L_862563_864134 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10171 chr3L - chr3L_13380699_13380765 chr3L_13380698_13380699;chr3L_13380765_13380766 chr3L_13379701_13380698;chr3L_13380766_13380916 0.00 0.00 0.00 8.33 NA 0.00 0.00 3.12 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 NA 3.77 5.26 0.00 0.00 0.00 6.06 5.00 5.26 2.78 3.23 0.00 0.00 0.00 0.00 3.70 4.76 3.85 2.22 3.64 3.70 3.77 0.00 0.00 0.00 0.00 5.00 4.08 4.00 0.00 0.00 NA 0.00 0.00 5.00 5.56 0.00 10.00 K alternative_donor I_chr2R_8821104_8821171,CG13322,I_chr2R_8823775_8823829 chr2R - chr2R_8823766_8823817;chr2R_8823766_8823829 chr2R_8823766_8823815 chr2R_8823675_8823765;chr2R_8823830_8823929 60.00 72.22 NA 69.57 54.55 NA 57.14 41.38 50.00 NA 43.75 60.00 66.67 78.57 58.33 38.89 NA 56.25 61.11 57.14 53.33 58.82 65.62 60.87 NA 72.73 61.90 60.00 60.00 50.00 52.63 66.67 64.00 58.33 55.56 60.00 65.22 NA 53.12 63.64 NA 63.33 46.15 61.11 61.54 54.55 66.67 75.00 65.38 NA 68.75 68.75 53.85 64.71 70.59 57.14 50.00 55.56 K alternative_donor CaMKII,I_chr4_1069766_1069812,I_chr4_1071236_1071307,RI_chr4_1071236_1071315,I_chr4_1071489_1071884,RI_chr4_1071489_1071968,I_chr4_1071569_1071884,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1071236_1071968;chr4_1071236_1071884;chr4_1071236_1072054;chr4_1071236_1071319 chr4_1071236_1071813 chr4_1071136_1071235;chr4_1072055_1072059 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9775,I_chr3R_464132_464367,I_chr3R_466059_466296 chr3R - chr3R_465475_465734 chr3R_465474_465475;chr3R_465734_465735 chr3R_465356_465474;chr3R_465735_466058 25.00 20.00 26.32 27.50 27.94 21.67 37.31 29.49 21.47 15.94 23.21 22.73 25.00 30.00 28.17 35.29 19.30 29.51 30.16 19.73 17.46 33.53 26.05 19.47 28.33 23.53 39.47 25.93 42.55 11.11 63.33 22.58 25.40 27.27 32.61 51.11 16.36 16.67 22.30 25.76 35.00 22.76 21.43 35.09 20.93 32.43 16.19 24.14 24.41 23.75 34.83 30.30 19.30 21.79 22.89 21.59 15.00 25.86 K intron_retention RI_chrX_2622435_2622577,CG2712,RI_chrX_2627170_2627263,RI_chrX_2627204_2627246 chrX + chrX_2627170_2627263 chrX_2627169_2627170;chrX_2627263_2627264 chrX_2627104_2627169;chrX_2627264_2627326 58.58 NA NA 50.00 NA NA NA 50.00 66.67 NA NA 58.82 NA NA 60.00 NA NA NA NA 63.64 NA NA 60.00 NA NA NA 69.23 NA 35.29 NA 22.22 42.11 69.23 69.23 NA NA NA NA 69.23 NA 47.37 58.33 NA NA NA 36.84 NA 40.00 50.00 69.23 69.23 NA NA NA NA NA NA 40.00 K intron_retention rdgB,noncoding_23582 chrX + chrX_13668012_13668718 chrX_13668011_13668012;chrX_13668718_13668719 chrX_13667839_13668011;chrX_13668719_13668873 83.33 80.77 88.24 82.35 88.89 90.48 82.61 86.36 87.72 90.91 92.86 65.71 100.00 89.47 77.78 89.47 77.78 83.33 77.78 75.00 88.24 38.89 86.21 85.29 90.00 76.92 88.24 92.86 81.82 66.67 84.00 85.71 77.78 82.14 85.71 72.00 85.71 73.53 71.43 92.50 81.82 88.89 85.71 80.00 75.00 84.38 82.05 70.00 81.08 81.25 82.50 89.47 76.67 70.83 95.45 88.24 89.66 72.73 K cassette CG33558,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,I_chr2R_2820149_2820628,EI_chr2R_2820947_2821570,CREI_chr2R_2832933_2850384 chr2R - chr2R_2817876_2820628 chr2R_2817876_2818978;chr2R_2820203_2820628 chr2R_2818979_2820202 chr2R_2817851_2817875;chr2R_2820629_2820728 66.67 55.56 78.57 93.33 54.55 38.89 41.67 52.94 65.71 58.82 72.73 75.00 62.50 91.67 73.68 84.62 85.71 66.67 66.67 84.38 76.92 34.29 52.54 68.42 56.00 77.78 57.69 50.00 83.33 66.67 77.78 68.18 80.00 60.87 55.17 88.00 72.73 53.33 66.67 68.09 60.00 62.50 81.82 67.86 59.38 65.96 51.72 69.23 72.41 36.67 56.25 75.00 57.69 48.72 63.16 70.97 70.00 75.86 K intron_retention cic chr3R + chr3R_16125516_16125674 chr3R_16125515_16125516;chr3R_16125674_16125675 chr3R_16125423_16125515;chr3R_16125675_16125874 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Lap1 chr2R + chr2R_10823524_10823596;chr2R_10823524_10823599 chr2R_10823524_10823631 chr2R_10823191_10823523;chr2R_10823632_10823803 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 NA 7.69 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 K jcn_only_AD msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585739_2586265;chr3L_2585739_2586036;chr3L_2585739_2586413 chr3L_2585739_2586402 chr3L_2585639_2585738;chr3L_2586414_2586502 94.81 91.09 95.33 95.02 95.65 94.76 89.15 96.25 94.15 91.18 95.06 95.57 97.59 94.83 96.07 95.57 92.91 92.49 95.65 97.44 93.10 95.48 92.72 92.91 94.81 93.93 92.98 92.75 89.34 94.48 97.09 96.00 96.28 93.56 94.55 96.39 88.89 94.93 97.37 90.16 93.43 96.52 95.54 83.50 95.50 94.22 93.94 93.07 95.33 87.50 96.67 95.16 92.00 96.00 95.10 95.50 90.38 94.12 K alternative_acceptor CG4119 chrX + chrX_5560502_5560598 chrX_5560502_5560589 chrX_5560410_5560501;chrX_5560599_5560831 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 88.89 100.00 NA NA 100.00 90.00 92.31 100.00 100.00 100.00 100.00 96.15 96.55 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 96.43 96.00 100.00 100.00 100.00 96.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 90.91 100.00 100.00 100.00 K intron_retention CG12016 chr3L + chr3L_3319906_3320514 chr3L_3319905_3319906;chr3L_3320514_3320515 chr3L_3319560_3319905;chr3L_3320515_3322489 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 4.76 2.94 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 NA 3.70 0.00 11.11 8.33 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 2.70 0.00 2.33 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 K jcn_only_AA WRNexo chr3R - chr3R_14191699_14191757 chr3R_14191702_14191757 chr3R_14191758_14191788;chr3R_14191633_14191698 97.78 97.78 96.97 97.67 92.86 100.00 98.21 98.04 99.09 100.00 93.88 98.36 97.37 97.37 100.00 98.73 100.00 100.00 96.97 98.06 96.88 97.37 98.46 93.10 NA NA 96.67 NA NA 96.97 100.00 98.44 97.46 98.28 93.33 96.43 98.44 100.00 NA 96.77 97.78 91.49 97.06 97.37 100.00 94.44 94.19 97.83 98.77 100.00 98.08 95.74 95.59 97.22 97.78 98.25 100.00 99.39 K intron_retention CG17600 chrX + chrX_21942714_21942775 chrX_21942713_21942714;chrX_21942775_21942776 chrX_21942596_21942713;chrX_21942776_21942904 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 1.92 NA 0.00 0.00 0.00 0.00 NA 0.00 11.76 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 NA NA 0.00 4.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Taf6 chr3L + chr3L_19594248_19594309 chr3L_19594250_19594309 chr3L_19594310_19594484;chr3L_19594013_19594247 75.86 60.87 78.57 85.00 88.89 80.00 86.67 78.95 70.83 88.89 88.89 70.83 90.00 88.89 82.35 76.47 63.64 NA 63.64 74.29 75.00 52.78 78.38 75.86 82.61 88.89 66.67 72.22 80.00 78.95 NA 69.57 81.08 75.00 65.00 100.00 75.86 69.57 75.00 75.86 87.10 70.97 70.00 69.23 55.00 74.19 63.89 92.86 75.00 75.61 70.27 88.89 61.90 78.38 90.91 67.86 64.52 82.61 K intron_retention I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10065706_10065776 chr2R_10065705_10065706;chr2R_10065776_10065777 chr2R_10065603_10065705;chr2R_10065777_10066101 1.39 1.98 0.00 1.89 0.00 0.00 0.00 3.81 2.67 0.00 2.50 3.82 1.37 1.47 0.00 2.30 0.00 0.00 2.63 0.71 1.39 3.33 2.60 3.17 1.52 2.35 6.45 1.67 4.65 4.24 0.00 0.00 0.00 0.00 2.27 5.38 2.55 0.00 1.16 1.88 3.28 2.47 2.74 0.00 0.00 1.08 0.00 2.01 0.00 0.00 2.07 0.00 0.00 0.00 2.00 0.00 0.00 0.00 K intron_retention mor chr3R - chr3R_11795815_11795876 chr3R_11795814_11795815;chr3R_11795876_11795877 chr3R_11795604_11795814;chr3R_11795877_11796651 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Syx7,I_chr3L_21439901_21439962 chr3L + chr3L_21439124_21439297 chr3L_21439123_21439124;chr3L_21439297_21439298 chr3L_21439033_21439123;chr3L_21439298_21439475 1.82 2.27 2.41 0.75 0.00 2.56 11.61 1.57 3.38 0.00 0.00 2.53 5.41 0.00 0.00 1.23 0.00 0.00 1.03 2.24 0.00 8.33 2.56 2.88 8.47 7.78 0.88 2.22 8.33 1.67 2.00 1.27 2.90 0.68 2.47 16.92 0.00 0.00 3.57 1.87 15.22 2.90 0.00 0.00 1.79 2.50 0.00 6.06 3.08 1.18 3.12 0.00 0.00 0.00 1.94 0.00 0.00 1.82 K alternative_acceptor CG15347,I_chrX_8353371_8353552,I_chrX_8353371_8354203,I_chrX_8353497_8353552 chrX - chrX_8353371_8354798 chrX_8353416_8354798 chrX_8354799_8354949;chrX_8353271_8353370 7.17 5.39 5.31 8.19 7.48 4.84 26.51 7.54 7.82 7.96 6.96 7.23 7.92 9.70 7.29 5.00 9.17 5.88 8.05 7.96 9.21 7.26 5.01 6.55 8.64 9.73 6.12 7.45 10.92 3.41 6.07 7.35 5.44 6.45 7.39 19.55 5.68 5.91 6.16 9.00 13.41 7.17 7.32 7.09 10.46 5.83 5.07 7.43 6.86 7.04 5.76 6.95 4.83 4.25 6.55 4.52 6.15 7.82 K alternative_last_exon CG18812,I_chr2R_3617214_3622585,noncoding_4991 chr2R - chr2R_3617214_3622881 chr2R_3618311_3622881 chr2R_3617147_3617213 chr2R_3618085_3618310 chr2R_3622882_3623125 0.00 0.00 0.00 1.67 3.70 0.00 0.00 1.30 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 5.00 2.38 2.63 0.00 1.19 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 K jcn_only_AD RpS14a,I_chrX_7827880_7828041,F_chrX_7841357_7841447 chrX + chrX_7827808_7828041 chrX_7827880_7828041 chrX_7828042_7828141;chrX_7827780_7827807 0.02 0.07 0.02 0.02 0.04 0.05 0.05 0.04 0.01 0.00 0.08 0.07 0.06 0.03 0.05 0.05 0.03 0.02 0.00 0.01 0.00 0.00 0.52 0.00 0.40 0.00 0.51 0.22 0.00 0.00 0.05 0.09 0.00 0.03 0.27 0.00 0.21 0.00 0.18 0.00 0.00 0.01 0.00 0.00 0.00 0.46 0.00 0.00 0.02 0.00 1.50 0.20 0.00 0.88 0.02 0.13 0.78 0.00 K jcn_only_AD Scamp,I_chrX_15342614_15342891,I_chrX_15343542_15343655 chrX - chrX_15342614_15343313 chrX_15342614_15342891 chrX_15342514_15342613;chrX_15343314_15343541 0.00 0.00 1.10 0.00 1.59 3.23 0.00 0.00 0.61 0.93 0.00 0.65 4.17 0.00 0.00 0.00 2.17 1.19 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.86 0.85 0.00 0.00 1.37 0.00 0.00 0.00 1.87 0.79 0.00 0.00 0.00 0.80 1.43 0.00 0.00 2.15 0.00 0.74 0.00 0.00 0.00 0.00 0.00 2.35 1.60 0.90 0.00 2.00 0.85 0.00 K alternative_donor mri,RI_chr3L_201061_201173,I_chr3L_212783_212843 chr3L + chr3L_201759_201816 chr3L_201763_201816 chr3L_201817_202165;chr3L_201441_201758 6.00 6.82 5.66 29.73 6.00 3.39 9.46 6.10 7.35 2.94 6.78 9.68 4.84 1.69 3.90 6.17 9.43 10.42 6.35 4.08 6.67 10.81 7.34 5.00 15.56 6.90 5.45 7.04 4.08 4.76 12.90 5.26 6.12 5.81 5.06 30.30 5.61 6.58 5.65 4.42 20.00 6.45 1.96 4.44 1.85 4.51 6.50 0.00 6.19 6.72 4.04 8.51 2.27 5.50 6.90 5.69 2.00 4.11 K jcn_only_AD CG10359,CG10357 chr3L + chr3L_3613883_3614069 chr3L_3613961_3614069 chr3L_3614070_3614253;chr3L_3613749_3613882 0.00 0.00 0.00 3.66 10.34 0.00 0.00 6.25 0.00 9.09 19.05 2.50 4.55 0.00 0.00 4.08 2.00 6.90 0.00 6.38 7.69 0.00 0.00 0.00 NA 3.57 0.00 NA 6.25 NA 2.86 0.00 0.00 0.00 5.00 NA 3.45 0.00 0.00 0.00 0.00 4.62 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 1.82 0.00 K alternative_donor F_chrX_15764251_15765393,CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15764432_15765393;chrX_15764522_15765393;chrX_15764247_15765393;chrX_15764620_15765393 chrX_15764599_15765393 chrX_15765394_15765493;chrX_15764236_15764246 15.69 0.00 7.14 24.00 28.57 10.00 14.29 17.14 13.16 0.00 33.33 20.00 12.50 11.11 7.14 10.81 20.00 16.67 21.05 16.00 10.00 66.67 50.00 0.00 28.57 20.00 8.33 NA 40.00 60.00 5.56 40.00 33.33 18.75 45.45 25.00 25.00 33.33 0.00 13.33 33.33 10.34 13.33 40.00 0.00 22.22 16.67 15.38 20.51 0.00 15.38 14.29 NA 0.00 14.29 NA 0.00 12.50 K intron_retention RpL35A chr3R - chr3R_1291454_1291521 chr3R_1291453_1291454;chr3R_1291521_1291522 chr3R_1291233_1291453;chr3R_1291522_1291749 0.04 0.05 0.04 0.05 0.10 0.00 0.06 0.00 0.12 0.04 0.00 0.03 0.00 0.08 0.00 0.06 0.00 0.00 0.04 0.10 0.00 0.00 0.04 0.00 0.05 0.08 0.19 0.48 0.09 0.04 0.03 0.04 0.07 0.08 0.03 0.00 0.06 0.00 0.03 0.12 0.00 0.09 0.00 0.03 0.10 0.06 0.03 0.10 0.14 0.04 0.09 0.00 0.01 0.00 0.06 0.06 0.07 0.10 K alternative_last_exon CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_264375_264441;chr4_264375_265043 chr4_264375_265805 chr4_264442_264510;chr4_265044_265460 chr4_265806_266712 chr4_264260_264374 97.73 97.56 97.87 97.92 94.12 97.44 91.53 98.00 98.28 84.62 84.85 97.59 97.83 97.73 98.11 95.00 100.00 81.63 97.06 95.88 85.29 96.00 93.10 97.30 93.75 100.00 93.75 100.00 100.00 95.24 97.37 96.67 92.59 96.77 95.65 100.00 100.00 100.00 100.00 97.92 100.00 97.92 100.00 100.00 100.00 97.92 100.00 92.31 95.88 97.78 97.67 100.00 96.15 100.00 98.51 100.00 100.00 96.36 K jcn_only_AA mei-P26 chrX + chrX_9063296_9063549 chrX_9063296_9063498 chrX_9061191_9063295;chrX_9063550_9064018 95.24 100.00 100.00 100.00 100.00 86.36 87.50 100.00 95.38 NA NA 97.56 100.00 91.67 91.43 100.00 95.65 90.91 100.00 93.48 95.24 94.23 93.75 NA NA 96.15 81.82 NA 100.00 91.18 100.00 NA 90.91 97.83 88.00 100.00 100.00 92.31 NA 91.43 NA 92.73 96.88 93.10 NA NA NA 93.62 94.74 NA 90.00 95.24 NA NA 95.83 NA NA NA K intron_retention Ptp10D,CEF_chrX_11516219_11517862,I_chrX_11516225_11516345 chrX + chrX_11561278_11562271 chrX_11561277_11561278;chrX_11562271_11562272 chrX_11561230_11561277;chrX_11562272_11562944 7.14 NA NA 7.14 NA NA NA 0.00 14.29 NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA 13.33 NA NA 0.00 NA NA 5.88 NA NA NA NA 11.11 NA NA NA NA NA NA 7.14 NA NA NA NA NA NA NA NA NA K intron_retention CG4674 chr3R + chr3R_6720841_6720897 chr3R_6720840_6720841;chr3R_6720897_6720898 chr3R_6719452_6720840;chr3R_6720898_6722140 0.00 0.00 NA NA 0.00 NA NA 10.53 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA NA 4.76 NA 0.00 2.50 0.00 0.00 NA 3.33 10.53 0.00 NA NA 0.00 0.00 NA 0.00 0.00 7.55 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 5.00 NA 4.17 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA K jcn_only_AD CG14767,RI_chr2R_4610372_4610761 chr2R - chr2R_4607290_4607359 chr2R_4607290_4607347 chr2R_4607151_4607289;chr2R_4607360_4607537 63.56 65.00 62.71 63.53 59.71 56.30 66.28 64.87 62.29 67.37 63.66 62.78 65.77 58.50 64.24 60.61 62.37 68.06 68.23 62.27 63.85 61.42 66.96 64.11 63.64 65.83 59.42 54.89 59.68 63.56 66.24 62.96 66.46 67.25 67.61 56.93 61.78 66.18 68.53 65.70 61.32 61.26 62.73 69.80 61.98 60.93 70.95 61.92 61.80 64.51 65.85 59.88 65.01 61.42 63.07 60.94 65.56 67.26 K intron_retention vir-1,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,noncoding_2764,I_chr2L_12421830_12423260 chr2L - chr2L_12409624_12421640 chr2L_12409623_12409624;chr2L_12421640_12421641 chr2L_12409456_12409623;chr2L_12421641_12421740 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.08 0.00 0.07 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.24 0.13 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention vimar,CG30156 chr2R - chr2R_2866103_2872916 chr2R_2866102_2866103;chr2R_2872916_2872917 chr2R_2865197_2866102;chr2R_2872917_2873214 2.70 10.53 7.41 3.70 0.00 0.00 2.13 6.56 4.62 0.00 0.00 4.44 3.57 0.00 7.41 4.65 12.50 3.23 7.69 5.77 9.09 0.00 3.23 0.00 NA 0.00 3.45 5.88 0.00 0.00 0.00 0.00 0.00 3.77 12.50 0.00 0.00 0.00 12.50 2.70 0.00 1.92 0.00 0.00 0.00 6.67 0.00 3.39 8.33 NA 0.00 8.00 NA NA 4.44 5.26 0.00 0.00 K jcn_only_AD CREF_chr3R_5589662_5589762,CG8481 chr3R + chr3R_5594297_5594466;chr3R_5593863_5594466 chr3R_5594185_5594466 chr3R_5594467_5594493;chr3R_5593583_5593862 8.34 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG1572,RI_chrX_11450380_11450442,I_chrX_11450380_11452520 chrX - chrX_11450380_11450442;chrX_11450380_11452565 chrX_11450380_11452571 chrX_11450280_11450379;chrX_11452572_11452620 97.49 97.66 97.58 97.27 98.15 98.00 97.95 97.20 97.95 96.63 97.96 97.49 98.15 97.57 95.29 97.51 98.39 97.98 97.71 97.09 97.82 97.43 97.09 97.84 97.24 97.81 96.53 95.08 96.05 96.74 98.00 96.87 97.15 97.97 97.51 97.41 97.85 98.14 98.49 96.44 97.43 97.80 98.22 97.52 96.63 96.99 97.09 97.07 97.12 97.39 96.82 98.14 96.87 96.36 97.54 97.45 97.54 97.13 K intron_retention NTPase chr2L - chr2L_2881321_2881381 chr2L_2881320_2881321;chr2L_2881381_2881382 chr2L_2881215_2881320;chr2L_2881382_2882511 0.33 0.00 0.00 2.68 0.75 0.00 0.60 0.00 0.31 0.00 0.78 0.60 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.33 1.56 1.05 1.48 1.13 1.93 0.58 2.16 2.93 7.20 0.00 0.00 0.00 0.00 0.70 0.00 1.43 1.08 0.00 0.36 0.77 0.68 0.00 0.00 0.66 0.00 0.60 0.00 0.65 0.00 0.79 1.36 0.00 0.00 0.67 0.00 0.00 0.58 0.00 N intron_retention R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083522_8089356 chr2L_8083521_8083522;chr2L_8089356_8089357 chr2L_8083444_8083521;chr2L_8089357_8089736 100.00 100.00 100.00 74.47 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K intron_retention CG10026 chr2L + chr2L_19456569_19456629 chr2L_19456568_19456569;chr2L_19456629_19456630 chr2L_19456417_19456568;chr2L_19456630_19456724 5.00 NA 0.00 26.92 NA 0.00 NA 5.00 13.16 NA 20.00 0.00 4.76 0.00 4.76 6.25 0.00 NA 11.11 21.43 NA NA NA 0.00 NA 35.29 17.65 NA NA 0.00 7.14 NA NA 0.00 NA NA NA NA NA 3.23 NA 13.16 6.25 6.67 NA NA NA 9.52 6.25 0.00 4.76 NA NA NA 0.00 NA 6.67 0.00 K jcn_only_AD CG11033,I_chr3R_4879198_4879257,I_chr3R_4882567_4883651 chr3R + chr3R_4878298_4879257 chr3R_4878350_4879257 chr3R_4879258_4879357;chr3R_4878279_4878297 76.73 NA NA NA NA NA 71.43 65.38 69.05 NA NA 86.49 NA NA 90.48 85.37 70.00 72.73 79.17 86.96 NA 76.19 78.38 NA NA NA 72.73 NA 80.00 77.27 NA NA NA 75.00 63.64 NA 68.00 NA NA 85.71 NA 75.00 NA 84.00 NA NA NA 82.61 62.50 NA 91.18 NA NA NA NA NA NA NA K alternative_donor CG15072,RI_chr2R_14576128_14579545,I_chr2R_14589693_14590032 chr2R + chr2R_14575874_14579545;chr2R_14576017_14579545;chr2R_14576049_14579545;chr2R_14576247_14579545;chr2R_14576056_14579545 chr2R_14576154_14579545 chr2R_14579546_14579571;chr2R_14575805_14575873 4.00 0.00 0.00 7.69 0.00 16.67 5.88 11.11 4.00 0.00 11.11 6.67 5.88 8.33 12.50 5.56 0.00 0.00 6.67 5.00 0.00 14.29 0.00 0.00 0.00 12.50 0.00 0.00 0.00 14.29 0.00 0.00 9.09 6.67 8.33 12.50 12.50 0.00 0.00 5.88 0.00 7.14 11.11 9.09 0.00 0.00 0.00 11.11 6.25 0.00 0.00 0.00 0.00 0.00 25.00 0.00 0.00 11.11 K intron_retention CG40045,noncoding_14308,RI_chr3L_24023955_24028531,RI_chr3L_24023958_24028536,I_chr3L_24024771_24028531,I_chr3L_24025959_24028531,I_chr3L_24028601_24028670 chr3L + chr3L_24023958_24027977 chr3L_24023957_24023958;chr3L_24027977_24027978 chr3L_24023858_24023957;chr3L_24027978_24028118 82.78 NA NA 92.31 NA NA 93.33 100.00 95.45 NA NA 75.00 NA 72.73 NA 68.75 NA NA 87.50 NA NA NA NA NA NA NA 70.00 88.89 NA NA 60.00 NA NA 77.78 NA NA NA NA NA 78.05 NA 90.00 NA NA NA NA NA 88.89 92.31 NA 77.78 NA NA NA NA NA NA 45.45 K alternative_donor MB8.chr3R.pasa.66,CG1105,I_chr3R_2892020_2892122,RI_chr3R_2892020_2892252 chr3R - chr3R_2892020_2892252;chr3R_2892020_2892645 chr3R_2892020_2892122 chr3R_2891920_2892019;chr3R_2892646_2892745 2.94 2.94 3.70 0.00 0.00 2.94 4.08 1.67 2.99 0.00 4.17 3.64 10.34 3.12 2.22 7.89 3.85 3.57 0.00 1.85 0.00 0.00 1.89 2.08 3.70 0.00 2.70 3.70 2.86 3.12 5.00 3.45 0.00 3.33 3.03 0.00 2.27 2.33 2.63 5.56 3.03 2.86 3.85 2.70 3.57 2.22 2.08 2.86 4.69 3.12 3.33 7.14 0.00 4.17 2.33 0.00 2.13 4.65 K cassette mib2 chr2L + chr2L_19035866_19038084 chr2L_19035866_19037803;chr2L_19037972_19038084 chr2L_19037804_19037971 chr2L_19035761_19035865;chr2L_19038085_19038754 98.89 100.00 97.30 79.44 100.00 98.44 98.88 98.98 99.37 100.00 91.53 99.29 98.15 100.00 100.00 100.00 100.00 100.00 98.39 99.32 95.00 98.39 98.37 98.98 100.00 98.55 98.18 100.00 95.83 97.62 98.77 97.44 100.00 99.15 98.59 98.53 99.07 98.89 99.17 100.00 98.36 99.26 98.04 100.00 100.00 98.55 100.00 98.61 99.26 98.36 99.15 100.00 97.67 97.78 98.73 98.44 98.61 100.00 K jcn_only_AD CG33156 chr2R - chr2R_9437422_9439612 chr2R_9437422_9439456 chr2R_9437104_9437421;chr2R_9439613_9439932 91.67 NA NA NA NA NA NA NA 96.30 43.48 NA 93.55 NA NA NA NA NA NA NA 94.59 NA 100.00 95.00 89.66 NA NA NA NA NA NA 100.00 NA NA 90.00 NA 95.24 88.00 80.00 86.49 53.49 NA 83.87 NA NA NA 92.59 84.62 94.44 NA 95.45 91.67 NA NA NA NA NA NA 78.57 K cassette CG2852,noncoding_8670 chr2R - chr2R_18533040_18533686 chr2R_18533040_18533425;chr2R_18533551_18533686 chr2R_18533426_18533550 chr2R_18532940_18533039;chr2R_18533687_18533826 100.00 100.00 99.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.88 100.00 99.89 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG5037 chr2L + chr2L_10331931_10331987 chr2L_10331931_10331971 chr2L_10331854_10331930;chr2L_10331988_10332345 0.00 0.00 1.43 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 1.18 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 N jcn_only_AA CG34394,I_chr2L_3365674_3365965,RI_chr2L_3365677_3365965,I_chr2L_3365701_3365757 chr2L - chr2L_3365976_3367244;chr2L_3365674_3367244 chr2L_3365677_3367244 chr2L_3367245_3367719;chr2L_3365601_3365673 70.62 69.44 67.50 80.00 76.92 69.23 73.21 70.49 68.63 74.29 85.37 77.23 71.43 80.56 74.29 71.93 72.50 61.11 69.70 70.65 62.22 56.56 67.24 71.15 59.62 70.59 71.67 68.18 83.33 71.93 64.29 NA 73.47 77.97 70.18 67.80 74.49 75.93 71.28 68.00 NA 63.00 74.07 61.54 76.00 65.38 59.38 56.00 67.27 67.74 62.86 58.33 74.19 80.77 60.98 80.00 71.43 NA K alternative_donor sar1,I_chr3R_18184656_18185246,I_chr3R_18185015_18185246,I_chr3R_18185148_18185246 chr3R + chr3R_18184351_18185246;chr3R_18185148_18185246;chr3R_18185015_18185246 chr3R_18184656_18185246 chr3R_18185247_18185346;chr3R_18184285_18184350 0.00 0.00 0.00 0.26 0.00 0.00 0.29 0.00 0.20 0.00 0.53 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.37 0.19 0.00 0.41 0.00 0.27 0.57 0.44 0.33 0.59 0.54 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.46 0.49 0.00 0.00 0.00 0.44 0.32 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Mocs1 chr3L + chr3L_11065511_11065569;chr3L_11065511_11065661 chr3L_11065511_11065549 chr3L_11064659_11065510;chr3L_11065662_11066454 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 1.92 0.00 0.00 1.43 2.78 2.70 0.00 2.27 0.00 0.00 2.94 0.00 0.00 0.00 NA 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K jcn_only_AD chico,I_chr2L_10246534_10246899 chr2L - chr2L_10246040_10246184;chr2L_10246040_10246755;chr2L_10246040_10246867;chr2L_10246040_10246899 chr2L_10246040_10247024 chr2L_10245878_10246039;chr2L_10247025_10247051 0.00 0.00 0.00 1.67 0.00 0.00 2.08 1.59 3.37 NA 0.00 1.30 5.13 0.00 0.00 3.85 6.25 5.00 3.85 3.37 6.45 4.65 0.00 0.00 0.00 2.50 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 1.75 0.00 NA 3.08 2.78 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 4.35 0.00 3.45 0.00 K intron_retention CG42257,F_chr2R_17955634_17955931 chr2R + chr2R_17954788_17955931 chr2R_17954787_17954788;chr2R_17955931_17955932 chr2R_17954418_17954787;chr2R_17955932_17956031 13.04 14.29 10.00 25.00 0.00 20.00 9.09 10.00 8.89 19.05 NA 7.14 0.00 NA 15.00 NA NA 14.29 NA 10.00 33.33 16.67 12.50 15.38 25.00 NA 13.04 30.77 13.64 12.50 18.75 21.43 17.14 15.00 10.00 21.74 7.41 7.14 13.51 10.26 19.05 12.12 NA 8.70 16.67 16.00 13.33 8.70 5.56 7.41 13.79 10.53 7.69 13.04 8.70 10.53 14.29 11.76 K jcn_only_AA CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907784_9908531 chr2L_9907848_9908531 chr2L_9908532_9908619;chr2L_9907756_9907783 5.00 NA NA NA NA NA NA NA 3.03 NA NA NA NA NA NA NA NA NA NA 3.85 NA 12.20 NA NA NA NA NA NA NA NA NA NA NA NA NA 9.09 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17177609_17178113 chr3R - chr3R_17177609_17200781 chr3R_17177609_17178113 chr3R_17177509_17177608;chr3R_17200782_17200881 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2362869;chr2L_2361586_2362590 chr2L_2361586_2362674 chr2L_2361486_2361585;chr2L_2362870_2362919 100.00 100.00 80.00 72.73 83.33 100.00 88.89 71.43 71.43 NA NA 92.86 100.00 66.67 85.71 83.33 100.00 50.00 100.00 100.00 100.00 100.00 88.89 100.00 NA 100.00 83.33 100.00 NA 100.00 100.00 NA 100.00 92.31 100.00 75.00 100.00 100.00 100.00 100.00 NA 93.33 83.33 83.33 NA 100.00 100.00 NA 92.31 100.00 100.00 83.33 NA 75.00 100.00 100.00 100.00 83.33 K jcn_only_AA CG10990,noncoding_23570 chrX - chrX_13646056_13648862 chrX_13646061_13648862 chrX_13648863_13649094;chrX_13644619_13646055 99.71 99.24 98.47 99.43 100.00 99.28 99.59 99.02 99.74 99.41 98.05 97.33 99.53 99.40 98.96 99.71 100.00 98.88 99.16 99.79 100.00 99.62 99.21 100.00 100.00 100.00 100.00 100.00 99.27 99.63 99.60 99.03 99.79 99.74 97.84 100.00 100.00 100.00 97.85 100.00 100.00 98.48 99.41 99.03 100.00 100.00 100.00 99.77 98.96 100.00 100.00 100.00 100.00 100.00 99.60 100.00 98.51 100.00 K jcn_only_AD mys,I_chrX_7958795_7961094 chrX + chrX_7955904_7957872;chrX_7955908_7957872;chrX_7955914_7957872;chrX_7955759_7957872;chrX_7956114_7957872;chrX_7955901_7957872;chrX_7956125_7957872 chrX_7955967_7957872 chrX_7957873_7958492;chrX_7955741_7955758 0.00 0.00 0.38 0.60 0.55 0.49 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.93 0.00 0.00 0.16 0.00 1.70 0.45 0.00 0.84 0.00 1.80 0.00 1.24 0.91 0.25 0.00 0.29 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.49 0.82 0.25 0.63 0.00 0.41 0.78 0.00 0.00 0.00 0.00 0.53 0.00 K alternative_donor Gs1l,I_chr2L_4456517_4456723,I_chr2L_4458058_4458120 chr2L - chr2L_4456521_4456723;chr2L_4456521_4456725 chr2L_4456521_4456719 chr2L_4456386_4456520;chr2L_4456726_4456801 11.11 12.50 0.00 11.11 0.00 0.00 5.00 5.88 5.41 NA 6.67 10.53 16.67 0.00 7.14 13.33 0.00 26.67 5.56 9.38 0.00 NA 22.22 12.50 42.86 16.67 40.00 NA 20.00 NA 5.26 11.11 18.75 8.00 NA 20.00 11.11 NA 38.46 21.05 11.76 8.00 10.00 18.75 16.67 17.65 NA 6.67 22.22 NA NA 25.00 NA 20.00 7.69 14.29 15.38 6.25 K cassette TepII,I_chr2L_7696207_7698724,I_chr2L_7697158_7697976 chr2L - chr2L_7696207_7698724 chr2L_7696207_7698373;chr2L_7698531_7698724 chr2L_7698374_7698530 chr2L_7696107_7696206;chr2L_7698725_7698824 66.67 75.00 100.00 66.67 83.33 80.00 83.33 61.54 63.16 NA NA NA 80.00 55.56 66.67 80.00 NA NA 75.00 75.00 NA 25.00 66.67 54.55 44.44 NA 77.78 20.00 NA 44.44 60.00 NA 30.00 80.00 50.00 53.85 66.67 NA 75.00 68.18 NA 72.22 NA 70.59 NA 63.64 66.67 55.56 92.31 NA 53.33 44.44 100.00 NA 80.00 85.71 66.67 55.56 K jcn_only_AD CG15738,RI_chrX_11786544_11786762 chrX + chrX_11786437_11786762 chrX_11786544_11786762 chrX_11786763_11786862;chrX_11786322_11786436 0.00 0.00 0.00 2.86 NA 0.00 5.00 0.00 0.00 13.04 0.00 1.67 0.00 0.00 0.00 0.00 NA 4.00 0.00 1.43 0.00 1.64 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 1.41 0.00 0.00 0.00 2.08 0.00 NA 2.50 0.00 2.90 0.00 0.00 0.00 1.35 4.44 0.00 0.00 3.85 0.00 0.00 0.00 0.00 K jcn_only_AD Aats-ala chr2L - chr2L_8381453_8381679 chr2L_8381453_8381510 chr2L_8380448_8381452;chr2L_8381680_8381706 2.78 1.77 2.05 4.76 4.64 2.15 7.99 3.96 2.58 0.74 2.68 4.63 2.78 3.63 0.71 1.52 3.70 6.67 1.81 2.73 3.47 2.23 12.35 7.78 3.15 3.48 2.11 2.44 2.22 1.16 4.33 1.64 1.56 2.56 6.45 2.34 1.80 5.36 6.54 2.49 0.44 3.33 1.65 6.21 1.22 2.09 5.80 1.57 3.13 6.85 6.56 2.54 4.00 5.13 3.15 6.60 5.95 1.34 K multi_cassette lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22831575_22832085 chr2L_22831575_22831635;chr2L_22831820_22831885;chr2L_22832038_22832085 chr2L_22831636_22831819;chr2L_22831886_22832037 chr2L_22831506_22831574;chr2L_22832086_22832154 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 96.77 100.00 98.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 K intron_retention RI_chr3R_21301568_21301702,MED28,I_chr3R_21310025_21310086 chr3R + chr3R_21301568_21302812 chr3R_21301567_21301568;chr3R_21302812_21302813 chr3R_21301499_21301567;chr3R_21302813_21303467 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG12842,Tsp42Ej,Tsp42Ek chr2R + chr2R_2929236_2929289 chr2R_2929235_2929236;chr2R_2929289_2929290 chr2R_2929074_2929235;chr2R_2929290_2929652 17.65 NA NA NA NA NA NA NA 5.88 NA NA 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG31064,RI_chr3R_23056388_23064246,RI_chr3R_23059404_23062725,I_chr3R_23069667_23070365 chr3R - chr3R_23059404_23064246 chr3R_23059403_23059404;chr3R_23064246_23064247 chr3R_23059304_23059403;chr3R_23064247_23064346 2.94 4.35 0.00 12.50 0.00 4.17 5.26 0.00 4.17 NA 0.00 4.17 7.41 0.00 0.00 4.35 0.00 0.00 0.00 5.77 0.00 21.74 0.00 2.94 NA 6.67 11.11 0.00 13.04 9.09 6.45 20.00 22.22 0.00 0.00 15.79 5.71 0.00 0.00 6.90 12.50 5.26 0.00 0.00 0.00 0.00 0.00 15.79 3.92 0.00 5.56 0.00 0.00 0.00 0.00 0.00 3.12 8.00 K intron_retention CG9836,I_chr3R_4654041_4664113,I_chr3R_4749124_4756437 chr3R - chr3R_4648792_4648982 chr3R_4648791_4648792;chr3R_4648982_4648983 chr3R_4648564_4648791;chr3R_4648983_4649023 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.35 0.00 1.83 0.00 0.00 0.00 0.90 0.00 2.56 0.00 0.00 0.00 0.76 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.43 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.63 0.75 0.00 1.52 0.00 K intron_retention Cip4,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4363128_4363987 chr3L_4363127_4363128;chr3L_4363987_4363988 chr3L_4363028_4363127;chr3L_4363988_4364067 6.72 6.85 3.60 6.36 8.06 4.65 26.39 2.82 4.90 3.25 7.37 5.69 2.90 5.43 4.81 5.41 2.90 5.21 3.77 4.79 3.70 8.66 6.88 9.04 11.40 6.94 10.40 8.54 11.04 8.51 5.42 10.10 8.38 3.05 6.72 3.37 6.45 5.71 5.67 7.17 10.67 5.37 6.06 4.90 7.14 8.53 8.33 8.65 4.09 7.32 8.59 4.93 8.80 7.38 5.65 7.22 9.93 10.33 K intron_retention CG2224 chr3R - chr3R_26284545_26284647 chr3R_26284544_26284545;chr3R_26284647_26284648 chr3R_26283993_26284544;chr3R_26284648_26284877 0.00 2.94 0.00 6.25 0.00 0.00 4.26 0.00 1.52 0.00 0.00 1.30 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.70 0.00 4.55 3.85 0.00 6.15 2.70 3.90 0.00 0.00 0.00 0.00 0.00 0.00 2.00 3.70 4.26 4.44 1.19 2.70 0.00 0.00 1.72 0.00 0.00 0.00 2.75 0.00 0.00 1.52 0.00 0.00 4.08 0.00 2.13 0.00 0.00 K jcn_only_AD CG1347 chr3R + chr3R_1495515_1499211;chr3R_1496295_1499211 chr3R_1495452_1499211 chr3R_1499212_1502282;chr3R_1495435_1495451 0.00 0.00 0.00 7.69 7.14 4.55 1.72 4.55 0.00 NA 0.00 18.64 7.69 3.12 0.00 1.96 0.00 4.76 2.50 4.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.90 2.63 3.12 NA 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.33 2.13 NA 0.00 4.17 0.00 4.41 NA 4.88 NA NA NA 3.70 NA NA NA K alternative_donor Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2364640;chr2L_2361586_2364836;chr2L_2361586_2365060;chr2L_2361586_2364302;chr2L_2361586_2364594;chr2L_2361586_2364312;chr2L_2361586_2364889 chr2L_2361586_2364480 chr2L_2361486_2361585;chr2L_2365061_2365065 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor eIF-5A,I_chr2R_19945430_19946454,I_chr2R_19945576_19946006,I_chr2R_19945723_19946006,I_chr2R_19945783_19946006,I_chr2R_19945852_19946006,I_chr2R_19945875_19946006,I_chr2R_19945921_19946006,I_chr2R_19946299_19946454,I_chr2R_19946657_19946733,I_chr2R_19948517_19948682 chr2R + chr2R_19945576_19946006;chr2R_19945921_19946006;chr2R_19945426_19946006;chr2R_19945875_19946006 chr2R_19945430_19946006 chr2R_19946007_19946106;chr2R_19945343_19945425 92.72 92.54 92.63 91.50 93.79 93.34 93.87 92.27 94.08 91.49 94.86 92.66 93.53 92.50 92.78 94.31 93.92 92.71 93.09 92.47 92.72 88.10 93.97 94.71 94.21 91.61 91.07 91.75 89.27 87.22 92.24 91.52 88.47 92.94 91.09 90.64 94.33 94.64 93.72 93.86 91.56 93.36 93.48 94.05 91.86 92.24 93.58 90.91 93.31 93.78 91.63 95.41 92.12 92.31 93.55 94.43 94.07 89.94 K intron_retention CG33523,RI_chr3L_5920177_5921323 chr3L + chr3L_5921008_5921323 chr3L_5921007_5921008;chr3L_5921323_5921324 chr3L_5920946_5921007;chr3L_5921324_5921396 24.16 NA NA 12.50 NA NA 33.33 NA 20.00 NA NA 25.00 NA NA NA 29.41 NA NA NA 20.00 NA 20.69 NA NA 53.85 33.33 25.00 33.33 23.33 12.50 10.53 30.77 8.33 13.33 23.08 66.67 28.57 NA NA 26.09 41.18 21.05 NA NA 19.05 35.71 NA 31.82 18.75 NA NA NA NA NA NA NA NA 15.00 K jcn_only_AA CG6838,I_chr3L_22709306_22709668 chr3L - chr3L_22709303_22709397 chr3L_22709306_22709397 chr3L_22709398_22709514;chr3L_22709206_22709302 14.29 16.82 10.32 23.27 13.41 22.35 12.38 14.39 12.29 22.41 17.72 18.60 12.05 8.97 13.64 11.54 14.46 17.72 6.45 10.58 10.81 20.78 15.75 15.22 17.39 14.29 13.49 17.54 15.85 14.84 11.93 9.30 20.27 15.29 20.25 9.88 9.84 11.30 14.92 18.75 19.44 11.41 11.39 14.48 13.56 20.78 13.73 11.39 13.97 16.54 13.22 10.59 20.83 18.48 14.78 13.18 14.12 10.29 K intron_retention Acyp2,CG4699 chr3R + chr3R_11618696_11618763 chr3R_11618695_11618696;chr3R_11618763_11618764 chr3R_11618679_11618695;chr3R_11618764_11618873 0.00 0.00 0.00 3.85 NA NA 4.65 0.00 7.32 0.00 NA 8.82 NA NA 5.56 2.94 23.08 0.00 NA 2.56 NA NA 10.53 0.00 NA 0.00 0.00 NA NA NA 0.00 4.17 NA 9.09 NA NA 0.00 0.00 0.00 10.00 0.00 7.41 11.76 NA 0.00 0.00 0.00 11.11 0.00 NA 9.52 0.00 NA 0.00 16.67 3.85 0.00 0.00 K intron_retention mRNA-capping-enzyme chrX - chrX_14135159_14135212 chrX_14135158_14135159;chrX_14135212_14135213 chrX_14134885_14135158;chrX_14135213_14135351 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 1.94 0.00 0.00 1.39 2.53 2.78 0.00 0.93 0.00 0.00 0.00 6.32 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 2.80 0.00 0.00 0.00 0.00 2.25 0.00 1.58 K jcn_only_AD CG11686 chr3R + chr3R_9086141_9087326 chr3R_9086209_9087326 chr3R_9087327_9087492;chr3R_9086072_9086140 25.00 NA 12.50 43.75 NA 25.00 NA 25.64 NA NA NA 25.00 NA NA 21.74 28.21 NA NA NA 39.53 NA NA NA NA NA NA NA NA NA NA 32.26 NA NA 40.91 NA NA NA NA NA 27.59 NA 33.33 NA 21.74 22.58 19.44 NA 40.54 17.54 20.00 NA NA NA NA 20.69 NA NA 24.32 K jcn_only_AD gd,I_chrX_11881464_11881506 chrX - chrX_11881004_11881082 chrX_11881004_11881064 chrX_11880452_11881003;chrX_11881083_11881239 77.27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 77.27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N intron_retention Dif,dorsal,RI_chr2L_17438018_17439189,I_chr2L_17442335_17442399,FI_chr2L_17449369_17450215,noncoding_3500,RI_chr2L_17450002_17450219 chr2L - chr2L_17439298_17450310 chr2L_17439297_17439298;chr2L_17450310_17450311 chr2L_17439190_17439297;chr2L_17450311_17450315 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 50.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K intron_retention Pten,I_chr2L_10256507_10256803,F_chr2L_10259663_10260253 chr2L - chr2L_10257123_10257394 chr2L_10257122_10257123;chr2L_10257394_10257395 chr2L_10257003_10257122;chr2L_10257395_10257716 5.88 NA NA NA NA NA NA 15.00 NA NA NA NA NA NA NA 0.00 NA NA NA 5.88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 6.67 NA NA NA NA NA NA NA NA NA K alternative_donor Taz,I_chr2R_8641602_8641912,I_chr2R_8641633_8641971,I_chr2R_8648027_8648303 chr2R - chr2R_8641633_8641971 chr2R_8641633_8641912 chr2R_8641533_8641632;chr2R_8641972_8642012 100.00 100.00 100.00 95.83 100.00 100.00 94.74 100.00 100.00 100.00 100.00 96.67 100.00 93.75 92.86 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 72.22 95.24 100.00 100.00 94.74 100.00 100.00 100.00 96.88 96.55 97.22 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 90.00 97.37 92.86 96.30 100.00 100.00 96.67 100.00 96.55 96.43 100.00 K intron_retention CG8199,MBD-like chr3R + chr3R_5381666_5381725 chr3R_5381665_5381666;chr3R_5381725_5381726 chr3R_5381531_5381665;chr3R_5381726_5382260 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA NA 9.68 NA NA 0.00 0.00 NA NA 13.33 NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA N jcn_only_AD CG41320 chr3LHet + chr3LHet_1532849_1545754 chr3LHet_1545188_1545754 chr3LHet_1545755_1545890;chr3LHet_1532736_1532848 55.00 NA NA NA NA NA NA NA 55.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Mef2,I_chr2R_5806354_5806933,CREFI_chr2R_5809509_5845628,I_chr2R_5814375_5816404,RI_chr2R_5846889_5846948 chr2R - chr2R_5806354_5806951 chr2R_5806353_5806354;chr2R_5806951_5806952 chr2R_5806254_5806353;chr2R_5806952_5807033 62.07 75.00 66.67 52.78 72.22 65.00 57.89 59.26 71.05 53.85 50.00 61.11 33.33 68.75 70.97 58.82 77.27 80.00 64.00 46.88 60.00 82.61 65.22 50.00 81.25 75.00 51.72 90.91 30.00 56.25 50.00 64.29 47.83 70.00 63.16 52.94 53.85 62.50 70.00 50.00 69.23 58.97 55.56 59.09 53.85 72.00 62.07 47.37 59.38 67.57 65.79 70.59 46.15 70.37 65.38 50.00 66.67 55.00 K jcn_only_AA ced-6,I_chr2R_5328640_5328696 chr2R - chr2R_5325238_5328696 chr2R_5328640_5328696 chr2R_5328697_5328796;chr2R_5324931_5325237 1.19 2.91 0.81 2.04 0.85 0.89 2.99 0.49 2.41 0.00 1.59 2.80 0.00 1.69 1.71 2.04 0.79 2.70 2.99 5.67 0.83 0.97 1.57 0.00 1.41 0.00 0.74 1.20 1.33 1.01 2.94 0.00 0.00 1.49 1.12 0.00 1.65 0.88 0.70 0.76 1.54 0.83 1.89 1.35 0.00 2.91 1.89 3.23 1.17 0.00 1.52 0.00 0.00 1.43 1.19 0.00 1.89 0.00 K mutually_exclusive pgant5,I_chr2L_5074530_5077534,I_chr2L_5075830_5077076,I_chr2L_5079575_5093241 chr2L - chr2L_5074530_5077076,chr2L_5077258_5077534 chr2L_5074530_5075648,chr2L_5075830_5077534 chr2L_5077077_5077257 chr2L_5075649_5075829 chr2L_5074430_5074529;chr2L_5077535_5077634 1.27 0.00 1.45 0.00 0.00 0.00 1.59 1.09 0.74 1.41 0.00 5.26 0.00 1.52 1.35 1.49 0.00 0.00 1.52 2.14 0.00 1.16 0.00 1.33 2.08 1.61 1.25 4.55 1.47 2.22 0.00 2.13 0.83 2.02 1.45 0.00 0.00 0.00 2.20 2.29 1.39 0.68 0.00 1.27 2.27 1.94 0.00 1.37 1.69 0.00 1.30 0.00 1.89 0.00 1.15 1.54 0.00 0.96 K intron_retention HSPC300,I_chr2R_19915648_19915744,I_chr2R_19915648_19915903,I_chr2R_19915648_19916060 chr2R - chr2R_19915648_19916136 chr2R_19915647_19915648;chr2R_19916136_19916137 chr2R_19915548_19915647;chr2R_19916137_19916160 0.00 0.00 0.00 1.20 0.00 1.59 2.00 1.00 0.87 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.45 0.00 0.00 0.00 0.34 1.90 0.95 0.00 0.00 0.00 0.00 0.74 0.98 0.00 0.00 1.40 0.53 K intron_retention gro chr3R + chr3R_21867624_21868716 chr3R_21867623_21867624;chr3R_21868716_21868717 chr3R_21867477_21867623;chr3R_21868717_21869101 16.67 19.15 10.71 20.83 34.78 16.28 18.87 17.39 20.00 16.67 26.09 13.89 20.00 18.18 16.36 16.05 17.24 19.35 16.00 13.79 13.51 29.03 15.96 20.00 16.28 9.09 23.08 35.00 20.00 24.44 10.91 12.82 28.33 13.92 16.95 16.36 38.89 31.25 16.33 12.50 14.29 14.00 17.07 25.53 6.25 9.80 7.27 14.56 13.27 18.37 17.24 22.73 13.33 9.52 16.67 18.18 18.18 7.58 K cassette cac chrX - chrX_11830877_11833727 chrX_11830877_11832953;chrX_11833155_11833727 chrX_11832954_11833154 chrX_11830725_11830876;chrX_11833728_11833752 50.00 NA NA 20.00 NA NA NA 57.14 50.00 50.00 NA 50.00 NA NA 37.50 NA NA NA NA 50.00 NA 38.46 50.00 NA NA NA NA NA NA NA NA NA NA NA NA 50.00 83.33 NA 42.86 50.00 NA 80.00 NA 66.67 NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA K intron_retention Prx6005 chr2L - chr2L_2877804_2877863 chr2L_2877803_2877804;chr2L_2877863_2877864 chr2L_2877611_2877803;chr2L_2877864_2878125 1.27 1.85 0.00 4.55 0.00 0.00 0.00 1.32 1.09 0.00 2.70 1.23 0.00 0.00 1.96 1.67 2.63 0.00 0.00 0.00 0.00 NA 1.79 2.82 6.25 3.57 5.00 0.00 8.57 9.52 6.67 0.00 0.00 0.00 0.00 9.09 0.00 2.33 0.00 3.45 6.38 0.00 0.00 0.00 4.35 3.85 3.17 3.45 1.61 3.77 3.39 0.00 0.00 0.00 3.03 2.08 0.00 0.00 K alternative_acceptor CG33090,CEI_chr2L_14342636_14342777 chr2L + chr2L_14341577_14342783 chr2L_14341577_14342777 chr2L_14341307_14341576;chr2L_14342784_14342877 42.86 33.33 39.29 58.33 42.86 42.86 36.67 33.33 44.44 36.36 43.75 39.13 22.22 40.00 59.09 46.15 40.00 40.00 38.10 42.86 47.37 34.21 51.22 31.58 47.06 57.14 62.50 47.83 54.17 42.42 43.48 42.86 40.62 37.93 39.13 46.15 42.86 52.00 46.51 41.86 36.84 46.34 33.33 40.00 32.00 45.83 45.45 42.86 46.81 33.33 45.95 39.13 47.06 58.82 39.13 46.43 57.14 54.55 K alternative_acceptor RhoGDI chr3L + chr3L_19922009_19923920 chr3L_19922009_19923914 chr3L_19921868_19922008;chr3L_19923921_19924114 98.31 98.48 98.51 97.73 98.11 98.33 98.92 97.54 99.40 97.67 98.59 98.67 100.00 98.72 98.92 98.31 96.30 100.00 95.71 97.35 95.77 96.97 98.85 100.00 100.00 100.00 98.59 98.28 97.73 98.28 96.43 100.00 95.65 99.15 97.92 94.92 98.91 98.28 98.31 96.59 96.67 98.44 100.00 100.00 96.97 95.83 98.51 97.14 96.25 98.21 98.68 98.18 100.00 98.00 98.75 100.00 95.92 100.00 K jcn_only_AD jim,I_chr3L_22791582_22791898 chr3L - chr3L_22792549_22793124 chr3L_22792549_22793040 chr3L_22792351_22792548;chr3L_22793125_22793884 86.21 77.55 86.21 71.43 88.00 86.21 NA 85.71 87.67 NA NA 88.64 95.24 75.00 76.92 88.46 84.00 78.95 88.00 83.02 86.96 85.53 71.93 88.68 78.26 86.67 82.61 NA 86.84 72.00 86.21 NA 90.91 80.43 NA 85.71 77.42 75.00 85.42 88.71 NA 90.32 89.66 92.59 NA 75.00 93.33 88.89 91.84 83.33 83.33 75.00 92.59 82.14 90.62 89.66 90.91 NA K jcn_only_AD CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3018082_3018278 chr2L_3018082_3018163 chr2L_3018075_3018081;chr2L_3018279_3018287 97.37 NA NA 96.15 NA 85.00 94.29 100.00 100.00 NA NA 94.44 NA 95.00 NA 97.96 NA NA 95.00 100.00 NA 93.55 NA NA NA NA NA NA NA NA 88.24 100.00 NA 95.83 NA NA NA NA NA 97.62 100.00 96.15 NA 97.06 100.00 100.00 NA 97.37 97.62 NA NA NA NA NA NA NA NA 100.00 N alternative_acceptor CG13185 chr2R - chr2R_7757210_7757323 chr2R_7757263_7757323 chr2R_7757324_7757450;chr2R_7756791_7757209 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 84.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046104;chr3L_16045251_16046129;chr3L_16045251_16045854;chr3L_16045251_16046111 chr3L_16045251_16046108 chr3L_16045216_16045250;chr3L_16046130_16046204 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 4.88 0.00 0.00 0.00 K intron_retention kay,R_chr3R_25614823_25615439,E_chr3R_25616137_25617114 chr3R + chr3R_25608870_25617114 chr3R_25608869_25608870;chr3R_25617114_25617115 chr3R_25608652_25608869;chr3R_25617115_25617214 3.16 2.08 3.28 6.25 3.79 4.52 4.62 4.76 3.00 3.25 3.16 4.94 4.94 4.94 4.14 3.90 6.22 4.05 5.00 4.37 3.73 4.07 2.08 1.97 2.16 3.61 2.62 5.22 3.44 2.75 4.33 2.17 2.36 4.15 2.79 2.19 1.74 1.23 1.64 1.90 2.23 4.29 4.22 1.03 1.93 0.75 1.27 4.67 3.65 1.03 2.04 2.11 0.00 0.75 4.62 0.94 1.30 2.40 K jcn_only_AD Tango11,RI_chr2R_17605192_17606585,RI_chr2R_17605202_17605260 chr2R - chr2R_17605202_17606585 chr2R_17605202_17605260 chr2R_17605102_17605201;chr2R_17606586_17606685 0.65 1.74 2.38 0.00 0.00 0.00 0.96 0.99 1.52 1.05 0.00 0.00 0.00 1.72 0.00 0.00 2.04 6.94 0.00 0.00 0.88 2.17 0.00 0.00 1.69 0.00 0.78 0.65 2.48 0.66 1.33 1.03 0.00 0.00 1.39 1.08 0.85 0.00 0.00 0.00 1.12 2.34 0.00 2.31 2.29 0.93 0.00 0.94 0.60 0.69 0.00 0.00 0.00 0.00 0.00 0.00 1.29 0.00 K intron_retention CG12702,I_chrX_19654440_19654520 chrX - chrX_19655232_19655288 chrX_19655231_19655232;chrX_19655288_19655289 chrX_19654521_19655231;chrX_19655289_19656306 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.67 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG34413,I_chr2R_20770543_20770586,I_chr2R_20771136_20772048,I_chr2R_20773500_20774745 chr2R + chr2R_20770543_20770599 chr2R_20770543_20770586 chr2R_20770443_20770542;chr2R_20770600_20770686 0.61 1.61 1.07 0.32 0.00 0.57 0.85 0.65 1.38 0.98 0.00 0.38 0.81 0.00 1.52 0.00 1.53 0.76 0.54 0.36 4.14 0.27 2.45 0.60 1.02 0.52 0.61 1.33 1.69 0.62 1.21 0.73 0.00 1.12 1.44 1.32 0.00 2.00 0.00 0.31 0.55 0.54 0.69 0.00 0.53 0.36 0.00 1.24 0.26 0.00 0.57 0.75 0.00 0.00 0.40 0.85 1.47 1.09 K alternative_acceptor Elongin-B,RI_chr3R_16404530_16404635 chr3R - chr3R_16404515_16404635 chr3R_16404530_16404635 chr3R_16404636_16404735;chr3R_16404430_16404514 1.09 0.95 1.09 1.98 1.57 0.65 1.72 1.43 1.31 1.52 1.49 0.67 0.92 1.01 0.00 1.42 0.75 0.71 0.75 1.31 0.00 0.71 0.80 0.81 2.10 0.62 1.66 2.17 1.43 0.48 1.95 0.93 0.70 0.98 1.15 2.13 0.34 2.01 0.34 0.40 2.30 0.57 1.92 1.61 1.24 1.27 1.45 0.76 1.33 1.17 0.00 1.25 0.00 1.45 0.65 0.84 0.88 1.42 K jcn_only_AA bwa,I_chr2L_20073310_20073377 chr2L + chr2L_20066899_20069052 chr2L_20066899_20069047 chr2L_20066389_20066898;chr2L_20069053_20069304 99.23 100.00 98.53 98.58 98.77 100.00 99.07 100.00 98.01 99.02 100.00 99.24 100.00 100.00 97.44 100.00 100.00 100.00 100.00 99.23 98.46 99.05 99.09 100.00 100.00 100.00 100.00 98.88 99.45 98.43 98.21 98.98 100.00 99.15 100.00 98.88 99.32 98.75 99.20 99.55 98.58 99.29 100.00 99.10 99.41 98.62 98.88 99.40 97.04 100.00 97.73 100.00 98.18 97.96 100.00 100.00 97.10 98.72 K intron_retention CG4699 chr3R + chr3R_11623517_11623808 chr3R_11623516_11623517;chr3R_11623808_11623809 chr3R_11623020_11623516;chr3R_11623809_11624126 2.30 1.85 1.30 2.20 2.33 3.39 4.72 0.00 2.22 1.41 1.37 5.03 3.33 0.00 2.53 3.77 0.00 4.48 4.44 3.28 4.55 1.80 3.85 2.40 1.06 3.70 2.26 0.00 2.30 1.00 4.35 3.92 2.02 5.88 4.05 2.22 0.71 0.00 2.30 1.72 2.63 2.38 3.77 1.37 5.75 5.56 2.02 0.00 2.76 1.64 2.34 2.90 1.54 1.33 0.00 3.88 2.78 0.00 K cassette B4,I_chr2L_13513474_13549131,I_chr2L_13547133_13549131,I_chr2L_13547162_13547692,I_chr2L_13547304_13549131 chr2L - chr2L_13535027_13549131 chr2L_13535027_13546910;chr2L_13547162_13549131 chr2L_13546911_13547161 chr2L_13534907_13535026;chr2L_13549132_13549231 82.14 81.25 85.71 75.00 77.78 81.25 92.31 67.65 84.44 87.50 85.71 93.10 76.47 91.67 80.95 76.92 80.00 100.00 90.48 90.70 88.24 87.10 88.24 82.14 90.00 73.68 91.67 72.41 80.00 88.89 95.65 86.67 62.16 76.67 85.00 84.00 85.71 78.95 70.97 88.89 95.83 89.19 86.67 85.29 81.48 76.92 73.91 82.93 75.00 67.86 73.33 78.95 66.67 75.00 82.61 71.43 62.50 80.65 K intron_retention mus308 chr3R - chr3R_8531704_8531769 chr3R_8531703_8531704;chr3R_8531769_8531770 chr3R_8531633_8531703;chr3R_8531770_8532684 0.00 NA NA 0.00 NA NA 10.53 10.71 0.00 NA NA 14.81 NA NA NA 7.14 NA NA 0.00 12.82 NA 0.00 4.76 0.00 0.00 NA 18.18 NA 0.00 6.67 23.53 6.67 0.00 4.00 NA NA 9.52 0.00 0.00 3.57 6.67 0.00 NA 0.00 10.00 0.00 16.67 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6422,RI_chr3R_20863994_20864142 chr3R - chr3R_20864041_20864142 chr3R_20864040_20864041;chr3R_20864142_20864143 chr3R_20863933_20864040;chr3R_20864143_20864238 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 8.33 7.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG7028,I_chr3L_207277_208117 chr3L - chr3L_209375_209449 chr3L_209375_209434 chr3L_209142_209374;chr3L_209450_209710 2.63 5.26 0.00 1.83 2.94 2.70 6.06 2.22 3.03 0.00 0.00 2.90 2.38 2.33 11.90 1.59 0.00 1.92 7.14 3.26 5.41 0.00 2.00 2.44 2.63 2.63 5.00 2.70 2.70 4.17 1.85 4.35 2.38 2.67 3.70 0.00 3.03 0.00 3.92 4.76 0.00 3.03 2.50 2.08 0.00 2.33 2.94 2.38 2.27 2.08 4.17 3.23 0.00 3.70 3.57 0.00 5.26 0.00 K alternative_acceptor Spred,I_chr2R_10655876_10656868 chr2R - chr2R_10650514_10651335 chr2R_10650580_10651335 chr2R_10651336_10651504;chr2R_10650450_10650513 89.13 88.14 96.88 84.31 94.44 94.12 97.62 90.20 87.91 92.31 91.43 87.88 93.10 92.59 97.87 88.37 82.61 91.43 87.88 88.31 96.67 86.00 87.50 93.88 87.50 89.19 89.66 62.50 87.10 95.74 90.24 88.24 89.13 96.15 86.00 69.81 91.30 84.09 93.75 85.14 80.49 95.77 96.43 87.72 77.50 92.98 84.91 86.67 98.41 71.11 92.19 75.61 89.74 85.42 91.84 95.65 88.57 88.57 K alternative_acceptor bdg,I_chr2R_11824086_11824186,CEI_chr2R_11826763_11827279 chr2R - chr2R_11812934_11812999 chr2R_11812937_11812999 chr2R_11813000_11814186;chr2R_11812769_11812933 38.89 39.62 40.82 42.03 22.45 36.00 32.14 31.96 39.78 30.43 30.43 36.96 30.56 37.50 37.74 31.88 41.03 36.54 55.10 42.57 34.78 40.30 37.18 34.00 36.36 40.00 49.23 48.72 40.32 35.59 41.27 43.24 51.92 43.68 34.69 47.62 36.25 38.89 46.25 36.36 33.33 39.00 45.00 46.03 38.78 44.64 39.29 31.88 30.00 31.48 53.85 34.78 34.62 40.00 36.51 40.54 41.30 46.81 K intron_retention Ilk chr3L + chr3L_21210253_21210666 chr3L_21210252_21210253;chr3L_21210666_21210667 chr3L_21209980_21210252;chr3L_21210667_21210832 10.75 9.80 11.76 22.89 7.69 7.69 9.86 28.99 18.10 13.79 10.42 10.78 15.38 10.42 14.81 10.45 13.21 14.00 11.48 14.43 6.12 1.61 6.35 8.00 13.33 9.52 14.58 19.35 30.23 8.33 14.29 14.29 19.35 17.33 7.32 11.11 5.13 9.52 4.76 5.06 20.00 10.75 15.00 4.55 12.50 12.50 7.50 9.76 9.09 8.33 5.66 9.52 10.20 5.26 9.52 11.63 12.68 12.24 K alternative_donor Hsc70-3,I_chrX_11699076_11699138,I_chrX_11699076_11699158,I_chrX_11699076_11699260,EI_chrX_11699076_11699573,I_chrX_11699076_11700062 chrX - chrX_11699076_11699923;chrX_11699076_11699335 chrX_11699076_11699321 chrX_11698976_11699075;chrX_11699924_11699938 90.91 83.33 85.71 89.47 87.50 100.00 89.47 93.75 100.00 100.00 87.50 93.33 90.91 88.89 88.89 100.00 100.00 85.71 90.00 82.35 85.71 92.31 90.00 91.67 87.50 88.89 100.00 100.00 100.00 88.89 100.00 85.71 100.00 86.67 100.00 100.00 90.00 85.71 100.00 88.89 100.00 94.74 100.00 100.00 87.50 100.00 100.00 100.00 100.00 91.67 88.89 100.00 100.00 66.67 90.00 85.71 90.91 88.89 K multi_cassette Amph,I_chr2R_8495684_8495920,I_chr2R_8495684_8495960,I_chr2R_8498227_8498492 chr2R + chr2R_8495684_8498083 chr2R_8495684_8496733;chr2R_8497142_8497246;chr2R_8497382_8498083 chr2R_8496734_8497141;chr2R_8497247_8497381 chr2R_8495584_8495683;chr2R_8498084_8498226 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA ena chr2R + chr2R_15047541_15047756;chr2R_15047541_15047684;chr2R_15047541_15047753 chr2R_15047541_15047681 chr2R_15047496_15047540;chr2R_15047757_15048407 43.25 40.56 40.00 46.23 45.27 44.26 43.52 37.47 44.07 34.90 49.57 43.72 45.73 40.51 42.09 48.34 42.56 41.94 43.20 42.60 43.39 51.32 41.99 45.97 43.12 42.36 43.97 35.71 43.56 43.80 39.71 43.31 46.57 42.72 40.82 46.46 40.37 49.44 44.55 41.50 42.28 44.12 37.77 44.19 49.17 49.30 46.82 44.85 41.16 45.15 43.25 43.05 40.27 41.42 39.06 42.48 43.51 38.06 K jcn_only_AA PP2A-B',I_chr3R_13997426_13997884 chr3R + chr3R_13997426_13997884;chr3R_13997426_14001054 chr3R_13997426_13998847 chr3R_13997326_13997425 1.12 0.00 2.27 0.00 0.00 2.13 0.00 0.00 0.00 1.37 0.00 0.93 6.38 2.22 0.00 2.38 0.00 2.04 4.55 4.92 3.64 1.27 1.38 0.00 0.00 6.00 3.49 0.00 1.19 0.00 19.44 2.22 3.57 3.19 0.99 0.00 1.52 0.78 0.71 1.03 0.00 0.00 4.88 2.50 1.35 1.35 0.75 0.00 0.00 1.10 1.10 0.00 1.54 1.35 1.89 1.14 1.12 0.00 K alternative_donor LSm7 chr2L - chr2L_16742443_16742625;chr2L_16742443_16742634 chr2L_16742443_16742662 chr2L_16742326_16742442;chr2L_16742663_16742986 1.32 1.20 3.95 4.59 1.79 4.76 2.33 2.78 0.00 0.00 2.17 0.83 1.49 1.64 1.28 1.04 2.38 0.00 1.39 1.14 5.77 2.38 1.09 1.03 0.00 1.37 1.03 2.44 1.56 2.17 1.32 0.00 3.23 3.88 1.92 0.00 2.97 1.12 0.84 1.22 2.83 0.87 0.00 1.32 1.72 3.88 0.88 0.00 0.83 1.16 1.03 0.00 2.83 0.85 4.30 0.97 1.45 2.02 K intron_retention CG5003 chr3R - chr3R_23741280_23741332 chr3R_23741279_23741280;chr3R_23741332_23741333 chr3R_23741118_23741279;chr3R_23741333_23741455 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 15.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N multi_cassette CG11873,I_chr3R_24900749_24922953,GM04590 chr3R + chr3R_24890335_24922953 chr3R_24890335_24900684;chr3R_24900749_24911575;chr3R_24911642_24922953 chr3R_24900685_24900748;chr3R_24911576_24911641 chr3R_24889554_24890334;chr3R_24922954_24923053 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K alternative_donor jing,I_chr2R_2505678_2506068 chr2R + chr2R_2501376_2501609;chr2R_2501545_2501609;chr2R_2501482_2501609;chr2R_2501388_2501609 chr2R_2501514_2501609 chr2R_2501610_2503238;chr2R_2501342_2501375 0.00 NA NA NA NA NA NA NA 0.00 NA NA 16.67 NA NA 0.00 14.29 NA NA NA 0.00 NA 9.09 0.00 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 16.67 NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 33.33 NA K jcn_only_AA CG10353,I_chrX_11775936_11778830,RI_chrX_11780885_11780988 chrX - chrX_11779138_11780988;chrX_11779315_11780988 chrX_11780885_11780988 chrX_11780989_11781085;chrX_11778831_11779137 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor sd,noncoding_23930,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15706305_15707881;chrX_15706564_15707881 chrX_15706472_15707881 chrX_15707882_15708324;chrX_15706259_15706304 22.22 57.14 14.29 50.00 16.67 30.00 42.86 54.55 36.84 NA 25.00 4.76 NA 61.54 22.22 NA 14.29 22.22 37.50 51.61 11.11 11.11 9.09 20.00 NA 20.00 40.00 11.11 14.29 33.33 42.86 12.50 18.75 57.14 16.67 NA 50.00 25.00 25.00 25.00 28.57 40.00 33.33 22.22 0.00 14.29 20.00 22.22 40.00 33.33 12.50 20.00 NA 0.00 41.67 20.00 60.00 10.00 K jcn_only_AA I_chrX_3345099_3416710,CG10803,I_chrX_3380218_3380345 chrX + chrX_3380055_3380345;chrX_3380055_3380351 chrX_3380055_3380115 chrX_3379703_3380054 5.88 NA 7.69 9.09 NA NA 3.85 4.88 6.06 NA 0.00 7.14 NA NA NA 6.45 NA NA NA 4.17 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA 9.76 0.00 8.33 NA NA 10.00 NA 14.71 NA 6.25 NA 0.00 NA NA NA 5.71 0.00 NA NA NA NA NA NA NA NA NA K alternative_donor CG7956 chr3R + chr3R_17351023_17351248 chr3R_17351141_17351248 chr3R_17351249_17351485;chr3R_17350986_17351022 100.00 100.00 NA NA NA NA 88.89 88.89 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA 90.91 100.00 NA NA NA 83.33 NA NA 94.74 NA 85.71 100.00 NA NA 100.00 85.71 NA 70.00 NA 100.00 NA 100.00 100.00 90.00 NA 100.00 100.00 87.50 100.00 NA NA NA 85.71 NA NA NA K cassette par-1,I_chr2R_15361473_15366246,I_chr2R_15363358_15366246,I_chr2R_15365210_15370456 chr2R + chr2R_15365210_15370456 chr2R_15365210_15366246;chr2R_15366371_15370456 chr2R_15366247_15366370 chr2R_15365166_15365209;chr2R_15370457_15370556 98.84 98.59 98.75 100.00 98.67 100.00 97.04 100.00 99.51 100.00 100.00 99.22 97.10 100.00 98.81 100.00 100.00 100.00 98.81 99.38 98.59 89.72 99.12 98.97 94.83 98.77 97.78 96.61 93.88 98.48 98.95 100.00 97.87 99.28 96.49 98.15 98.84 98.53 98.96 98.94 97.50 99.37 100.00 98.84 97.96 98.51 98.57 95.24 99.35 98.90 99.04 100.00 95.74 97.96 99.06 98.44 98.67 100.00 K intron_retention PGRP-LA chr3L + chr3L_9330322_9330553 chr3L_9330321_9330322;chr3L_9330553_9330554 chr3L_9330098_9330321;chr3L_9330554_9330760 0.00 0.00 NA 12.50 NA NA NA NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 6.67 K alternative_acceptor CG10981 chr3R + chr3R_1650698_1650754;chr3R_1650698_1650757 chr3R_1650698_1650778 chr3R_1650443_1650697;chr3R_1650779_1651166 27.27 33.33 38.46 20.00 NA 36.36 18.75 29.17 24.00 NA NA 30.43 42.86 44.44 9.09 25.00 27.27 33.33 50.00 28.21 16.67 30.00 23.81 29.41 16.67 35.71 23.81 37.50 0.00 20.00 11.11 50.00 44.44 26.67 30.77 33.33 NA 35.71 35.71 35.71 NA 30.77 NA 12.50 NA 25.00 15.38 16.67 23.08 21.05 33.33 NA 23.53 50.00 25.00 23.08 20.00 0.00 K alternative_acceptor tko,I_chrX_2363445_2363896 chrX - chrX_2336766_2337766 chrX_2337699_2337766 chrX_2337767_2337981;chrX_2336347_2336765 2.59 1.59 2.00 6.06 2.56 2.38 7.41 4.17 2.59 3.85 5.00 4.11 3.33 5.71 3.77 2.13 2.63 2.00 2.70 2.97 2.56 4.26 1.27 3.03 2.50 2.56 1.33 4.65 6.45 2.56 3.85 2.38 2.56 2.86 2.78 2.56 1.33 1.92 1.45 2.99 2.94 2.80 2.94 1.89 3.28 1.37 1.41 6.25 1.19 1.72 2.99 3.33 1.28 1.23 3.45 1.47 1.32 1.37 K intron_retention l(3)05822,I_chr3R_14115739_14115801 chr3R - chr3R_14115743_14115801 chr3R_14115742_14115743;chr3R_14115801_14115802 chr3R_14115488_14115742;chr3R_14115802_14115901 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 1.34 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.75 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Sirt4,RI_chrX_5565547_5565601 chrX - chrX_5559520_5559720 chrX_5559661_5559720 chrX_5559721_5560000;chrX_5558891_5559519 0.00 NA NA NA NA NA NA NA 3.33 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 9.52 NA NA NA NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA 9.52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG14646 chr3R + chr3R_216292_216399 chr3R_216291_216292;chr3R_216399_216400 chr3R_216265_216291;chr3R_216400_216431 100.00 98.28 98.41 98.86 98.11 100.00 98.65 98.96 99.27 100.00 98.21 100.00 98.08 100.00 98.51 100.00 100.00 100.00 98.46 100.00 97.96 100.00 97.18 98.53 100.00 100.00 98.70 100.00 100.00 100.00 98.04 97.78 100.00 98.75 97.56 100.00 100.00 100.00 100.00 100.00 100.00 97.41 98.21 98.57 100.00 100.00 100.00 100.00 98.96 100.00 100.00 100.00 98.21 100.00 100.00 100.00 98.65 100.00 K jcn_only_AA R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8088454_8089184;chr2L_8088454_8088609;chr2L_8088454_8089057;chr2L_8088454_8089356;chr2L_8088454_8089490 chr2L_8088454_8088664 chr2L_8088448_8088453 0.00 NA 2.17 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 2.78 0.00 0.00 NA 0.00 0.00 1.03 0.00 NA 3.33 0.00 0.00 0.00 NA NA NA NA 2.78 NA 4.35 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 3.33 NA 0.00 NA NA 1.03 NA 0.00 NA 0.00 NA 0.00 0.00 NA NA K intron_retention Anxb11,I_chrX_16314152_16314405,I_chrX_16314152_16315813 chrX - chrX_16314152_16316199 chrX_16314151_16314152;chrX_16316199_16316200 chrX_16314083_16314151;chrX_16316200_16316269 50.00 45.45 NA 76.47 NA NA 65.00 56.00 48.15 NA 33.33 66.67 43.75 88.89 60.00 50.00 60.00 50.00 60.00 57.14 NA 38.46 45.45 36.36 NA NA NA NA NA NA 29.41 NA 60.00 50.00 NA NA 15.38 NA NA 50.00 NA 50.00 66.67 58.82 NA 30.77 NA 66.67 45.16 NA 58.82 NA NA NA 53.33 NA 33.33 NA K alternative_last_exon ttk,I_chr3R_27554202_27554334,I_chr3R_27554601_27555353 chr3R + chr3R_27554202_27558641 chr3R_27554202_27555353 chr3R_27558642_27562961 chr3R_27555354_27558585 chr3R_27554114_27554201 67.65 66.22 67.65 70.41 66.07 68.42 73.26 74.07 72.55 66.67 67.31 67.23 75.44 73.85 67.12 73.40 72.22 67.80 71.83 66.20 67.27 70.24 69.57 64.13 67.19 67.21 68.60 60.32 67.16 71.23 69.84 59.65 64.52 73.64 69.84 69.44 65.71 63.89 63.37 69.53 64.41 70.68 71.19 71.83 56.72 61.45 59.46 70.83 72.52 65.38 68.32 68.42 57.14 57.81 68.35 58.90 56.32 64.58 K multi_cassette gp210,I_chr2R_1653709_1654789,I_chr2R_1655359_1655422 chr2R + chr2R_1653709_1654789 chr2R_1653709_1653957;chr2R_1654084_1654195;chr2R_1654302_1654789 chr2R_1653958_1654083;chr2R_1654196_1654301 chr2R_1653609_1653708;chr2R_1654790_1654889 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 97.50 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 98.00 100.00 K intron_retention CG11110 chr2R + chr2R_16529436_16529500 chr2R_16529435_16529436;chr2R_16529500_16529501 chr2R_16529215_16529435;chr2R_16529501_16530040 0.00 0.00 0.00 2.08 0.00 0.00 0.00 2.99 6.06 0.00 0.00 2.50 0.00 0.00 0.00 2.38 0.00 0.00 0.00 2.84 0.00 6.45 0.00 0.00 0.00 1.92 0.00 0.00 0.00 4.48 0.00 1.16 1.49 0.00 4.08 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 1.23 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 1.45 0.00 K intron_retention CG2017 chr3R - chr3R_1686127_1687510 chr3R_1686126_1686127;chr3R_1687510_1687511 chr3R_1685454_1686126;chr3R_1687511_1687544 43.74 50.00 41.67 71.43 NA 41.67 47.37 61.11 60.00 NA 54.55 50.00 NA 70.00 NA 46.15 NA 42.86 50.00 40.91 26.67 26.47 29.17 53.85 42.86 66.67 52.63 53.33 60.00 44.00 45.45 36.36 34.48 42.86 33.33 52.63 39.13 29.41 35.29 36.36 34.78 52.00 NA 43.48 40.00 37.04 27.78 34.29 50.00 47.37 33.33 63.64 NA 47.37 NA 53.33 NA 38.46 K jcn_only_AD CG14401,RI_chr2L_20870192_20870512 chr2L + chr2L_20870761_20870831 chr2L_20870773_20870831 chr2L_20870832_20870900;chr2L_20870700_20870760 12.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.00 NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG18445,I_chr2R_5927355_5927472,CG34220 chr2R - chr2R_5927355_5935755 chr2R_5927354_5927355;chr2R_5935755_5935756 chr2R_5927255_5927354;chr2R_5935756_5935798 0.00 0.00 2.35 0.00 0.00 0.00 0.00 1.68 1.67 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 1.42 2.31 2.00 2.47 0.00 0.62 1.91 10.08 0.00 0.00 0.00 4.85 0.97 3.39 2.15 0.77 0.00 0.00 1.31 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor inaE chrX + chrX_13678310_13679739;chrX_13678223_13679739 chrX_13678262_13679739 chrX_13679740_13679985;chrX_13677782_13678222 3.03 3.70 0.00 0.00 0.00 8.33 0.00 4.88 1.54 0.00 0.00 2.27 0.00 0.00 0.00 3.85 0.00 0.00 0.00 1.37 0.00 11.76 5.17 5.71 3.03 0.00 3.23 4.76 4.76 7.14 8.70 0.00 3.12 1.85 7.32 8.11 2.50 0.00 2.86 2.56 7.41 3.77 0.00 2.86 6.67 9.09 0.00 8.57 3.12 0.00 5.08 9.09 5.26 4.17 0.00 7.69 4.76 5.00 K intron_retention Arp87C chr3R + chr3R_8518667_8518725 chr3R_8518666_8518667;chr3R_8518725_8518726 chr3R_8518492_8518666;chr3R_8518726_8518877 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 1.84 0.00 0.38 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.62 0.00 0.00 0.52 0.52 0.00 0.00 0.74 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Su(var)3-7 chr3R + chr3R_9091023_9091462 chr3R_9091023_9091456 chr3R_9090118_9091022;chr3R_9091463_9092041 100.00 100.00 96.67 97.73 NA 100.00 100.00 97.83 100.00 NA 96.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 97.73 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 93.33 NA NA 100.00 100.00 NA 91.67 100.00 100.00 100.00 NA 100.00 100.00 95.24 100.00 NA NA 94.59 97.96 100.00 100.00 100.00 NA NA 100.00 100.00 NA 95.45 K intron_retention Sp212 chr3R - chr3R_10049251_10049364 chr3R_10049250_10049251;chr3R_10049364_10049365 chr3R_10048474_10049250;chr3R_10049365_10049530 75.53 NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA 69.23 NA NA NA NA NA NA NA NA 53.33 NA NA NA NA NA NA NA NA 81.82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG13933,I_chr3L_1773911_1773984 chr3L - chr3L_1773911_1773984 chr3L_1773911_1773980 chr3L_1773811_1773910;chr3L_1773985_1774084 100.00 100.00 100.00 97.06 100.00 97.06 94.34 96.83 97.80 NA 96.67 100.00 95.00 97.67 94.87 98.11 100.00 100.00 97.73 97.87 100.00 100.00 100.00 100.00 100.00 97.44 100.00 96.15 97.06 100.00 96.30 100.00 100.00 98.31 NA 100.00 100.00 100.00 97.73 100.00 NA 100.00 95.65 97.06 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA 97.78 100.00 100.00 NA N jcn_only_AD CG17184 chr3R - chr3R_7059293_7059643 chr3R_7059293_7059355 chr3R_7059124_7059292;chr3R_7059644_7060166 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.47 9.60 0.00 0.00 0.00 0.00 0.00 10.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG15094 chr2R - chr2R_14683672_14683774 chr2R_14683671_14683672;chr2R_14683774_14683775 chr2R_14682574_14683671;chr2R_14683775_14683911 0.00 1.01 0.00 0.00 0.00 0.00 2.70 0.81 1.01 0.00 0.00 0.00 0.00 0.00 0.00 1.57 0.00 0.00 1.20 0.00 0.00 0.00 1.80 0.80 0.00 0.00 0.91 2.13 0.00 0.00 2.94 0.00 0.00 2.38 0.00 0.00 0.69 0.00 0.73 0.00 0.00 2.10 0.00 0.85 0.00 0.00 0.00 0.00 0.00 1.09 1.61 0.00 0.00 0.00 2.35 0.00 0.00 0.00 K alternative_acceptor CG30460,F_chr2R_12957263_12957403 chr2R - chr2R_12954957_12955030 chr2R_12954960_12955030 chr2R_12955031_12955720;chr2R_12954321_12954956 87.50 85.71 NA NA NA NA 92.31 NA 92.86 100.00 NA 78.57 NA NA NA NA NA NA NA 71.43 NA 88.24 78.95 75.00 87.50 NA 92.86 84.21 90.00 92.31 90.00 NA 90.91 87.50 NA NA 93.33 87.50 94.12 87.50 75.00 83.33 NA 83.33 77.78 73.33 88.89 92.86 81.82 78.57 90.91 NA NA 80.00 NA 92.86 87.50 66.67 K intron_retention CG5642,I_chr3L_12138351_12138781 chr3L - chr3L_12138351_12139055 chr3L_12138350_12138351;chr3L_12139055_12139056 chr3L_12138251_12138350;chr3L_12139056_12139333 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Lnk,RI_chr3R_21714780_21715376 chr3R + chr3R_21714419_21715376;chr3R_21714788_21715376 chr3R_21714614_21715376 chr3R_21715377_21715476;chr3R_21714271_21714418 71.43 73.58 70.83 76.67 76.09 74.36 67.53 78.21 71.54 45.83 87.50 75.82 80.49 71.74 63.64 73.61 79.59 64.71 69.23 59.02 85.29 62.86 60.00 77.03 71.43 72.73 52.86 56.82 52.94 70.59 57.14 65.62 76.47 70.42 78.79 79.55 53.45 54.17 49.02 70.73 85.37 75.82 75.00 56.00 64.00 84.91 48.15 77.78 77.19 72.73 60.76 73.33 52.78 57.14 77.59 54.55 59.38 83.02 K alternative_donor RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522912_523360;chrX_522912_523215;chrX_522912_523414;chrX_522912_523194;chrX_522912_523389 chrX_522912_523323 chrX_522849_522911;chrX_523415_523436 1.25 0.87 1.74 0.72 0.00 1.06 2.45 1.14 1.14 1.82 0.00 1.92 2.47 1.25 2.25 1.94 0.00 1.32 2.47 0.80 0.00 0.00 1.72 2.63 1.11 3.64 2.75 0.91 1.69 1.10 2.06 1.22 0.54 1.63 1.39 2.08 1.61 2.11 1.42 0.57 1.44 0.90 0.00 0.82 0.56 1.40 2.46 0.39 1.11 3.06 4.12 0.00 1.20 0.88 0.97 2.50 1.33 0.86 K alternative_donor CG7816,R_chr3R_25691122_25691551,RI_chr3R_25691122_25692883,RI_chr3R_25691122_25694436 chr3R - chr3R_25691122_25694365 chr3R_25691122_25694254 chr3R_25691022_25691121;chr3R_25694366_25694618 81.03 83.33 86.57 82.47 92.00 84.62 84.17 72.13 87.97 73.08 79.66 87.50 71.62 81.03 81.25 83.13 83.02 88.24 88.00 76.74 72.73 85.25 81.48 84.75 78.85 86.54 81.08 72.73 60.87 73.91 94.52 68.75 71.05 77.78 84.44 77.19 76.79 86.05 69.09 89.09 80.00 85.22 84.00 83.12 72.50 76.47 79.17 79.07 80.20 73.44 79.27 86.05 80.49 76.32 86.57 80.00 81.58 74.51 K alternative_acceptor gish chr3R + chr3R_12100604_12100684;chr3R_12100604_12100709 chr3R_12100604_12100675 chr3R_12100535_12100603;chr3R_12100710_12100891 93.42 93.42 94.20 94.57 86.05 90.00 95.15 95.50 95.00 96.55 89.09 93.33 94.83 95.00 91.38 92.77 91.38 90.74 94.55 96.52 90.91 89.77 91.47 93.62 87.80 78.33 92.59 90.74 90.12 95.83 95.24 87.50 96.82 94.68 94.74 92.41 92.24 92.31 93.69 97.48 93.83 93.65 90.48 96.15 95.74 96.15 87.72 97.14 95.40 87.50 92.37 95.08 94.74 88.89 91.04 93.33 92.73 97.22 K alternative_donor CG6650,I_chr3L_14026788_14026844 chr3L + chr3L_14026784_14026844 chr3L_14026788_14026844 chr3L_14026845_14026944;chr3L_14026688_14026783 0.00 0.00 0.00 1.56 0.00 0.00 0.00 1.56 1.03 0.00 0.00 0.70 0.00 1.67 1.23 0.00 0.00 0.00 0.00 1.51 0.00 1.67 1.37 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 5.26 1.85 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.98 2.04 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG17698 chr3L + chr3L_23741393_23741523;chr3L_23739645_23741523 chr3L_23741474_23741523 chr3L_23741524_23741816 100.00 NA 100.00 91.07 NA 95.83 95.74 98.68 96.70 NA NA 100.00 100.00 96.97 100.00 94.74 100.00 100.00 100.00 94.12 NA NA NA NA NA 80.95 NA NA NA NA 96.92 100.00 NA 98.65 100.00 NA NA NA NA 100.00 NA 89.47 97.14 NA NA 100.00 95.24 100.00 98.88 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 K intron_retention bigmax,E_chr3R_23113334_23113889 chr3R - chr3R_23113908_23114049 chr3R_23113907_23113908;chr3R_23114049_23114050 chr3R_23113890_23113907;chr3R_23114050_23114217 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 1.92 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rgl chr3L - chr3L_13902284_13902355 chr3L_13902283_13902284;chr3L_13902355_13902356 chr3L_13902131_13902283;chr3L_13902356_13902868 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 2.17 0.00 0.00 NA 0.00 0.00 5.88 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 K alternative_donor ced-6,I_chr2R_5324717_5324924,I_chr2R_5328640_5328696 chr2R - chr2R_5325238_5328696;chr2R_5325238_5329037 chr2R_5325238_5329011 chr2R_5324931_5325237;chr2R_5329038_5329082 0.96 0.00 1.02 0.70 1.61 1.27 0.67 1.65 0.87 2.90 0.00 1.60 0.00 0.00 3.74 0.00 0.00 1.09 0.00 0.80 0.00 4.41 0.78 1.94 0.00 1.08 1.32 1.41 1.20 1.27 0.98 1.82 2.79 0.58 0.00 0.00 1.09 1.49 0.00 2.28 0.00 1.52 0.00 1.04 1.10 0.00 0.00 1.00 0.96 2.11 0.92 1.33 0.00 0.00 0.76 1.16 0.00 0.82 K jcn_only_AA CG8067 chr2R + chr2R_9871329_9871394 chr2R_9871329_9871389 chr2R_9871150_9871328;chr2R_9871395_9871645 100.00 100.00 100.00 96.88 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 100.00 96.15 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 97.22 NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 K cassette TepII,I_chr2L_7696207_7698724,I_chr2L_7696808_7697006,I_chr2L_7697158_7697976 chr2L - chr2L_7696207_7698724;chr2L_7696808_7698724;chr2L_7696207_7697976 chr2L_7696207_7697006,chr2L_7696808_7697006;chr2L_7697158_7697976,chr2L_7697158_7698724 chr2L_7697007_7697157 chr2L_7696107_7696206;chr2L_7698725_7698824 73.68 65.00 84.62 50.00 72.73 82.35 87.10 77.27 73.68 70.00 90.00 87.50 83.33 78.26 82.61 82.86 94.29 50.00 72.00 69.70 73.33 77.78 69.44 61.29 63.16 81.25 79.17 47.83 83.33 57.89 81.82 78.57 66.67 90.70 73.68 31.58 68.18 88.24 82.35 60.00 91.67 78.00 68.00 72.00 71.43 69.57 66.67 71.43 87.50 66.67 66.67 65.22 88.89 90.00 85.71 78.57 80.00 61.11 K jcn_only_AD CG41378,I_chr2RHet_1545717_1621473,I_chr2RHet_1545717_1621569,I_chr2RHet_1606049_1607768,RI_chr2RHet_1606049_1621284,noncoding_9480 chr2RHet - chr2RHet_1606049_1621473;chr2RHet_1606049_1621569 chr2RHet_1606049_1621636 chr2RHet_1605949_1606048;chr2RHet_1621637_1621662 0.00 1.92 0.00 NA NA 0.00 0.00 2.20 1.08 NA NA 0.00 0.00 0.00 2.04 0.00 0.00 0.00 1.82 3.51 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.63 0.00 2.13 8.00 1.09 0.00 0.00 0.00 0.00 2.33 3.45 3.12 0.00 0.00 1.52 4.17 1.64 0.00 2.44 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 1.56 6.10 K intron_retention Incenp chr2R + chr2R_3168643_3168798 chr2R_3168642_3168643;chr2R_3168798_3168799 chr2R_3167979_3168642;chr2R_3168799_3169337 0.00 0.00 0.00 0.97 0.00 0.00 2.70 3.16 1.05 0.00 1.23 0.00 2.60 0.00 2.33 0.00 2.90 0.00 0.00 1.18 0.00 0.00 0.50 0.78 0.00 0.00 2.22 0.00 2.04 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.45 0.55 0.39 0.88 0.00 2.05 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 2.17 0.00 0.00 0.00 1.00 0.53 1.57 K intron_retention POSH,RI_chr2R_13458667_13458738,Rab4,I_chr2R_13461027_13461136 chr2R + chr2R_13459272_13459332 chr2R_13459271_13459272;chr2R_13459332_13459333 chr2R_13458978_13459271;chr2R_13459333_13459827 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 4.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention hpo chr2R - chr2R_15382909_15382965 chr2R_15382908_15382909;chr2R_15382965_15382966 chr2R_15382187_15382908;chr2R_15382966_15384370 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 8.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention e(r) chrX - chrX_8799418_8799537 chrX_8799417_8799418;chrX_8799537_8799538 chrX_8798761_8799417;chrX_8799538_8799621 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 2.27 0.00 0.37 0.00 0.00 1.45 0.60 0.00 0.00 0.00 0.00 0.00 0.00 1.44 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.80 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD rtGEF,I_chr2L_20359184_20360012,I_chr2L_20359856_20360012 chr2L + chr2L_20356802_20360012 chr2L_20359856_20360012 chr2L_20360013_20360112;chr2L_20356590_20356801 1.49 1.41 0.79 0.00 0.00 1.10 0.83 2.74 0.87 1.59 0.00 0.00 3.85 0.00 1.46 4.44 1.92 0.00 1.09 0.46 0.00 7.52 2.29 0.86 5.85 1.75 2.17 4.70 1.56 3.23 0.00 2.42 3.61 0.71 1.11 4.63 2.64 2.70 3.70 3.19 0.00 0.92 0.00 1.61 0.47 2.19 1.43 1.52 0.00 2.48 3.59 5.88 0.94 1.49 0.00 2.78 2.58 1.20 K intron_retention sec8 chr3R - chr3R_1581057_1581124 chr3R_1581056_1581057;chr3R_1581124_1581125 chr3R_1580650_1581056;chr3R_1581125_1581331 0.00 0.00 0.00 7.41 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 1.72 0.00 0.00 1.47 0.00 0.00 0.00 0.00 8.51 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 K alternative_acceptor CG12582 chr3R + chr3R_29885_29987;chr3R_29885_29940 chr3R_29885_29934 chr3R_29816_29884;chr3R_29988_30053 80.94 82.43 83.46 83.15 81.82 74.81 82.61 78.60 80.42 83.02 80.65 79.75 85.00 81.15 83.63 81.25 79.55 81.88 81.62 82.86 79.70 82.95 81.78 77.69 80.17 77.24 84.19 88.34 77.62 78.17 79.72 79.70 80.94 80.88 78.79 46.60 81.87 80.61 78.97 81.36 82.76 79.87 78.18 84.44 85.29 82.91 80.72 82.96 81.96 78.79 78.48 78.23 81.41 79.75 79.53 78.91 82.64 82.24 K intron_retention CG13771,I_chr2L_6663380_6663435 chr2L - chr2L_6663375_6663435 chr2L_6663374_6663375;chr2L_6663435_6663436 chr2L_6663280_6663374;chr2L_6663436_6663500 62.15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 73.33 NA NA NA NA NA NA NA NA 64.29 NA NA NA NA NA 60.00 NA 50.00 NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG3638,REI_chrX_1128310_1128786,RI_chrX_1128313_1128642,I_chrX_1128313_1129783,EI_chrX_1128313_1130453,I_chrX_1128313_1130466,RI_chrX_1128313_1130468,I_chrX_1132012_1132060 chrX - chrX_1128310_1128786 chrX_1128313_1128786 chrX_1128787_1128886;chrX_1128213_1128309 95.34 NA NA 100.00 NA NA NA NA 92.31 91.43 NA 96.00 NA NA 95.45 NA NA NA NA 100.00 NA NA 95.83 NA NA NA 92.59 NA 97.06 94.74 NA 100.00 96.36 NA 93.10 91.30 95.24 85.00 96.88 95.45 84.44 100.00 NA 91.84 95.65 87.10 NA 87.65 NA NA 95.45 NA NA NA NA NA NA 88.89 K intron_retention oho23B,I_chr2L_2856176_2856244,I_chr2L_2856573_2856630,E_chr2L_2856577_2856641,RI_chr2L_2856673_2856772 chr2L + chr2L_2856673_2856768 chr2L_2856672_2856673;chr2L_2856768_2856769 chr2L_2856652_2856672;chr2L_2856769_2857028 100.00 100.00 100.00 100.00 96.43 96.43 100.00 98.91 98.75 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 98.67 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 95.65 100.00 100.00 96.77 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 K alternative_acceptor CG7029,I_chr3R_18617723_18618108 chr3R + chr3R_18617723_18617982 chr3R_18617723_18617979 chr3R_18617623_18617722;chr3R_18617983_18618028 95.35 96.30 95.00 100.00 94.44 100.00 95.65 96.67 97.73 93.33 91.67 88.24 91.67 100.00 95.24 94.12 100.00 94.74 100.00 91.67 93.75 92.86 97.44 93.48 92.50 100.00 94.44 94.74 95.83 100.00 95.00 100.00 100.00 94.12 100.00 94.74 95.35 93.10 93.94 97.14 93.33 94.87 100.00 95.83 95.45 100.00 100.00 95.65 89.19 93.55 91.89 94.74 100.00 96.00 95.00 100.00 100.00 96.30 K jcn_only_AA CG14299 chr3R - chr3R_14584412_14584462 chr3R_14584415_14584462 chr3R_14584463_14584568;chr3R_14583690_14584411 93.60 NA 92.86 92.31 91.30 NA 95.52 97.62 89.23 NA NA 97.18 84.09 93.94 87.50 83.08 86.96 90.00 96.67 91.57 90.00 97.30 94.92 95.24 95.00 87.50 94.59 NA 93.88 88.24 91.84 NA 91.67 93.33 86.96 76.67 95.00 95.65 96.43 97.06 NA 96.15 86.96 96.67 NA 96.55 92.31 95.88 83.02 NA 95.45 NA NA NA 97.62 NA NA NA K alternative_donor Nrg,I_chrX_8411470_8425729,RI_chrX_8411636_8425729,RI_chrX_8412432_8425557 chrX + chrX_8411668_8425729;chrX_8411454_8425729 chrX_8411543_8425729 chrX_8425730_8425829;chrX_8411428_8411453 0.00 0.00 NA 0.00 NA NA 0.00 0.00 2.70 NA NA 0.00 0.00 0.00 NA 0.00 10.00 NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA 3.70 0.00 NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K cassette jing,I_chr2R_2505678_2506068 chr2R + chr2R_2505678_2506068 chr2R_2505678_2505745;chr2R_2505894_2506068 chr2R_2505746_2505893 chr2R_2505578_2505677;chr2R_2506069_2506168 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Fmr1,I_chr3R_5934794_5935245,I_chr3R_5934801_5935537 chr3R - chr3R_5933202_5934416 chr3R_5933201_5933202;chr3R_5934416_5934417 chr3R_5933153_5933201;chr3R_5934417_5934633 0.74 1.03 0.00 0.00 0.00 0.00 2.25 1.83 1.85 1.23 3.92 1.33 0.00 0.00 0.00 1.23 0.00 1.64 0.00 1.25 1.82 1.97 0.66 0.00 2.35 0.00 1.65 3.81 0.93 1.20 0.00 0.00 0.95 0.00 0.00 1.75 1.88 0.00 0.72 1.79 0.00 0.00 0.00 2.50 3.64 0.00 2.90 0.00 0.76 4.55 0.00 2.78 0.00 0.00 0.00 NA 0.00 0.83 K jcn_only_AD dom,snoRNA:Psi28S-3316a,snoRNA:Psi28S-3316b,snoRNA:Psi18S-841a,I_chr2R_17217595_17218598,I_chr2R_17228865_17228924 chr2R + chr2R_17213153_17214923 chr2R_17213800_17214923 chr2R_17214924_17215724 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.85 K cassette CG2943 chr3R - chr3R_3731108_3731506 chr3R_3731108_3731412;chr3R_3731434_3731506 chr3R_3731413_3731433 chr3R_3730773_3731107;chr3R_3731507_3731819 0.48 0.00 0.65 0.92 0.85 0.86 1.09 0.48 0.35 0.00 0.00 0.00 0.94 0.00 0.61 0.47 0.00 0.00 0.65 0.00 0.77 0.82 0.00 0.59 0.00 0.00 1.69 0.97 1.45 0.97 1.32 0.00 0.00 0.00 0.00 2.11 0.00 0.74 0.00 0.50 0.00 0.84 0.00 0.00 1.25 0.83 0.00 2.50 0.00 1.15 0.00 1.03 0.84 0.00 0.57 0.00 0.79 0.00 K alternative_donor Sec22,I_chrX_700593_700676,RI_chrX_700599_700665 chrX + chrX_700593_700665 chrX_700599_700665 chrX_700666_700765;chrX_700499_700592 3.03 0.00 2.33 9.80 2.56 0.00 3.23 3.92 3.03 0.00 5.00 1.89 0.00 10.53 2.08 3.23 0.00 6.25 3.85 4.29 2.94 3.77 3.45 0.00 0.00 7.69 5.45 9.09 6.82 2.38 4.76 0.00 6.52 4.88 3.23 0.00 3.12 0.00 2.50 4.48 0.00 5.45 3.85 2.86 5.71 4.08 0.00 0.00 1.72 4.08 6.12 0.00 2.22 3.23 0.00 0.00 0.00 0.00 K alternative_acceptor CG15107,I_chr2R_14859289_14859333 chr2R - chr2R_14859269_14859333;chr2R_14859281_14859333 chr2R_14859289_14859333 chr2R_14859334_14859398;chr2R_14859203_14859268 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499338_1501798 chr3L_1499338_1499771;chr3L_1499880_1500244;chr3L_1500389_1501345;chr3L_1501407_1501798 chr3L_1499772_1499879;chr3L_1500245_1500388;chr3L_1501346_1501406 chr3L_1499043_1499337;chr3L_1501799_1501892 4.76 3.03 2.00 6.45 2.08 1.92 0.00 9.09 4.55 5.00 11.11 10.11 25.71 5.56 4.17 3.17 4.00 2.27 2.94 5.81 9.09 7.55 8.62 5.66 7.89 1.37 5.36 6.52 2.27 6.98 10.14 2.08 8.33 3.33 6.12 11.43 3.23 3.57 4.76 2.11 2.56 4.00 3.92 7.69 5.45 7.25 6.00 2.27 3.92 6.35 8.22 6.12 0.00 3.23 4.62 9.09 4.00 2.94 K jcn_only_AA CG32016,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_975677_978631 chr4_978516_978631 chr4_978632_978685 98.15 NA 97.30 95.24 NA 96.43 98.11 95.38 100.00 NA NA 98.51 92.11 100.00 100.00 100.00 95.83 92.86 95.24 100.00 NA NA 92.86 NA 95.45 96.00 100.00 NA NA 100.00 100.00 NA 96.15 95.59 100.00 100.00 NA NA NA NA NA 98.15 100.00 NA NA NA 100.00 NA 98.31 NA 100.00 NA NA NA 97.73 NA NA NA K alternative_donor Hsc70Cb chr3L + chr3L_14030522_14030577;chr3L_14030503_14030577 chr3L_14030513_14030577 chr3L_14030578_14030850;chr3L_14030355_14030502 33.33 NA NA 30.00 NA NA 50.00 33.33 37.50 NA NA 37.50 NA NA NA NA NA NA 25.00 41.67 NA NA NA NA NA NA NA NA 20.00 NA 33.33 NA NA 20.00 NA NA NA NA NA 33.33 NA 25.00 NA NA NA NA NA NA 50.00 NA NA NA NA NA 28.57 NA NA NA K jcn_only_AA Doa,I_chr3R_24715823_24718923,I_chr3R_24747391_24747896 chr3R + chr3R_24714257_24715487 chr3R_24714257_24714710 chr3R_24714171_24714256 1.84 2.27 8.89 6.56 0.00 0.00 NA 5.88 4.42 0.00 12.90 1.11 8.33 0.00 8.06 0.00 1.92 2.38 2.56 6.67 1.89 1.79 1.71 3.51 5.56 10.64 4.55 0.00 1.47 2.00 0.00 0.00 0.72 2.82 0.00 2.94 0.00 0.00 1.00 1.59 0.00 0.80 7.14 1.67 0.00 1.72 1.79 0.85 2.38 1.45 2.63 4.62 1.56 2.17 9.30 0.00 4.35 2.08 K alternative_donor slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,RI_chr2R_20289332_20289739,I_chr2R_20289332_20289846,I_chr2R_20289332_20290093 chr2R - chr2R_20289332_20289739;chr2R_20289332_20290093;chr2R_20289332_20289846 chr2R_20289332_20290083 chr2R_20289232_20289331;chr2R_20290094_20290193 51.06 50.00 42.11 37.93 50.00 53.33 47.37 41.86 49.09 30.00 43.75 53.33 50.00 50.00 43.48 51.06 52.00 50.00 45.83 48.89 57.89 43.48 66.67 47.06 46.67 57.89 56.00 52.63 42.86 66.67 62.96 37.50 42.11 53.66 66.67 63.64 56.25 44.44 41.67 58.82 60.00 43.90 57.89 57.14 60.00 68.75 75.00 61.54 56.10 50.00 64.00 63.16 70.00 66.67 48.00 37.50 44.44 57.89 K intron_retention BicD,Aac11,I_chr2L_17475843_17475910 chr2L - chr2L_17475355_17475407 chr2L_17475354_17475355;chr2L_17475407_17475408 chr2L_17474918_17475354;chr2L_17475408_17475522 100.00 96.77 100.00 99.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 98.53 100.00 100.00 100.00 99.12 100.00 100.00 98.48 100.00 100.00 96.00 100.00 97.37 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 99.00 97.73 100.00 100.00 NA 100.00 100.00 100.00 98.73 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor l(1)G0334,I_chrX_4596624_4596856,I_chrX_4596625_4596762 chrX + chrX_4596625_4596856 chrX_4596625_4596724 chrX_4596525_4596624;chrX_4596857_4596862 20.25 18.95 18.25 23.03 11.76 15.15 48.70 19.00 23.35 19.44 21.98 27.27 25.84 17.53 14.38 18.87 19.13 20.37 27.19 22.98 23.71 31.71 14.74 20.00 33.33 35.48 13.25 11.11 21.88 19.30 17.53 22.41 16.88 21.36 20.63 68.18 24.36 19.48 22.34 19.26 43.14 21.40 20.00 18.31 19.12 21.62 22.83 21.92 18.54 21.57 21.21 18.31 14.29 26.67 20.25 16.28 16.85 13.10 K intron_retention CREI_chr2L_9938511_9938564,CG5853,RI_chr2L_9942818_9944294,I_chr2L_9944682_9947179 chr2L - chr2L_9941059_9941118 chr2L_9941058_9941059;chr2L_9941118_9941119 chr2L_9940769_9941058;chr2L_9941119_9941119 4.26 5.26 2.44 5.17 3.45 2.94 5.56 4.29 5.31 3.85 0.00 5.26 0.00 3.12 6.82 19.57 8.11 0.00 4.35 2.86 0.00 1.14 9.86 5.06 6.25 2.00 6.35 4.55 0.00 7.32 10.26 0.00 6.67 5.88 4.76 2.38 5.77 0.00 1.96 12.82 0.00 4.26 2.50 5.88 0.00 0.00 2.47 0.00 2.50 2.86 6.12 6.25 0.00 4.76 2.08 4.92 1.06 4.35 K intron_retention I_chr3L_18892015_18892405,RpL26,I_chr3L_18892244_18892405,I_chr3L_18892340_18892405,I_chr3L_18892434_18892499 chr3L + chr3L_18892240_18892405 chr3L_18892239_18892240;chr3L_18892405_18892406 chr3L_18892172_18892239;chr3L_18892406_18892433 0.62 0.00 0.48 0.20 0.00 0.24 0.75 0.12 0.49 1.33 0.00 0.45 0.00 0.00 0.67 0.43 0.61 0.00 0.32 0.70 0.56 0.00 3.53 2.10 2.63 0.18 7.69 7.25 3.57 0.00 0.47 0.00 0.66 0.50 2.40 1.95 1.31 0.00 2.52 1.33 1.99 0.30 0.48 1.23 0.69 1.42 0.00 0.46 0.62 1.72 4.84 2.90 0.94 1.67 0.00 1.57 1.84 0.88 K intron_retention CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_155591_155927,I_chr4_157794_157864 chr4 + chr4_154551_155461 chr4_154550_154551;chr4_155461_155462 chr4_154513_154550;chr4_155462_155561 100.00 100.00 95.45 100.00 100.00 100.00 92.59 100.00 98.51 NA 93.33 100.00 100.00 96.97 100.00 98.00 94.44 100.00 96.55 100.00 100.00 NA 95.00 100.00 NA 100.00 100.00 NA 100.00 100.00 95.24 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 97.22 96.30 95.45 NA 100.00 100.00 100.00 96.30 NA 91.67 100.00 NA NA 100.00 100.00 100.00 100.00 K jcn_only_AD Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2364640;chr2L_2361586_2364480;chr2L_2361586_2364836;chr2L_2361586_2364302;chr2L_2361586_2364594;chr2L_2361586_2364312;chr2L_2361586_2364889 chr2L_2361586_2365060 chr2L_2361486_2361585;chr2L_2365061_2365065 3.44 2.67 4.12 2.73 2.94 5.96 2.22 5.18 5.20 3.06 2.86 4.55 1.58 2.69 2.25 3.44 3.23 3.39 4.46 2.96 3.11 0.93 6.18 5.56 5.22 3.94 6.25 4.49 1.99 3.89 7.25 2.37 0.26 5.31 8.40 5.88 3.63 5.00 2.69 2.74 3.01 4.51 4.11 0.00 3.70 4.51 0.00 1.74 5.95 1.48 7.63 5.00 3.96 1.96 3.20 3.97 2.90 1.00 K cassette Nup153,I_chrX_16495232_16495296 chrX + chrX_16501033_16503037 chrX_16501033_16501965;chrX_16502034_16503037 chrX_16501966_16502033 chrX_16500895_16501032;chrX_16503038_16504371 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.90 100.00 100.00 98.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.10 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22817840_22817943 chr2L_22817839_22817840;chr2L_22817943_22817944 chr2L_22817740_22817839;chr2L_22817944_22817982 98.36 97.06 97.67 98.81 96.30 96.88 98.68 97.75 99.00 92.86 96.43 98.63 97.56 100.00 100.00 98.36 93.33 100.00 97.87 96.55 95.65 97.37 97.62 100.00 100.00 100.00 96.88 100.00 100.00 95.45 98.36 100.00 100.00 98.70 100.00 96.88 92.59 100.00 100.00 97.37 100.00 97.75 97.14 100.00 100.00 100.00 95.65 96.55 98.86 95.24 100.00 100.00 100.00 93.75 100.00 95.83 96.43 100.00 K intron_retention I_chr2L_8140779_8156516,CG8498 chr2L - chr2L_8162238_8162310 chr2L_8162237_8162238;chr2L_8162310_8162311 chr2L_8162123_8162237;chr2L_8162311_8162416 0.00 0.00 3.33 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5080,I_chr2L_1163632_1163759 chr2L - chr2L_1161220_1161289 chr2L_1161219_1161220;chr2L_1161289_1161290 chr2L_1160290_1161219;chr2L_1161290_1161869 0.00 0.00 0.00 0.00 0.00 0.00 5.48 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 1.49 1.82 0.00 0.00 4.35 0.00 1.61 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 K alternative_donor RpL34a chr3R - chr3R_21884777_21884956 chr3R_21884777_21884941 chr3R_21884702_21884776;chr3R_21884957_21884989 4.26 NA 7.69 2.44 5.56 16.67 NA 2.38 8.33 NA 6.67 12.00 14.29 NA 4.35 NA 4.55 NA 8.33 3.33 6.25 0.00 NA 0.00 NA 4.17 NA 0.00 NA 0.00 10.00 NA 0.00 6.52 NA NA 6.67 NA NA 2.78 NA 3.49 4.55 0.00 2.33 NA NA 0.00 3.70 NA NA NA 3.12 NA 5.41 NA 6.25 3.03 K intron_retention CG17768 chr2L - chr2L_10403829_10403890 chr2L_10403828_10403829;chr2L_10403890_10403891 chr2L_10403730_10403828;chr2L_10403891_10403932 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 1.37 0.00 0.00 1.65 0.00 0.00 0.00 2.35 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor l(2)k14505,I_chr2L_21261891_21262012,I_chr2L_21275807_21277205 chr2L + chr2L_21261891_21262012 chr2L_21261958_21262012 chr2L_21262013_21262112;chr2L_21261791_21261890 98.33 98.51 98.59 97.35 98.41 95.65 100.00 99.03 98.21 96.97 93.44 96.49 100.00 98.25 97.50 97.85 100.00 100.00 98.61 95.00 98.48 100.00 97.78 97.62 100.00 100.00 95.74 97.14 98.25 97.50 94.05 96.43 98.33 99.03 98.41 93.10 96.77 96.72 95.18 98.85 98.04 99.21 98.33 100.00 100.00 98.95 97.37 93.75 99.13 95.60 99.00 98.00 98.51 95.95 98.85 98.75 98.59 98.88 K alternative_acceptor CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3017869_3017958 chr2L_3017904_3017958 chr2L_3017959_3018017;chr2L_3017812_3017868 100.00 100.00 100.00 98.00 100.00 100.00 94.20 100.00 99.02 100.00 100.00 98.68 95.65 100.00 100.00 100.00 100.00 100.00 98.18 98.53 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 99.09 100.00 96.77 100.00 100.00 93.75 100.00 100.00 96.67 97.92 100.00 100.00 100.00 100.00 100.00 100.00 96.67 96.15 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention RhoGAP92B,chr3R_15735640_15736030.0 chr3R + chr3R_15734332_15736614 chr3R_15734331_15734332;chr3R_15736614_15736615 chr3R_15734156_15734331;chr3R_15736615_15737580 0.00 0.00 0.00 3.00 0.00 1.77 1.83 0.00 0.88 0.00 0.00 1.03 1.94 0.00 0.00 2.11 0.00 2.30 0.00 0.82 1.96 1.28 0.00 1.35 0.96 1.06 1.61 3.85 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.45 0.00 1.06 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 1.02 1.01 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rbsn-5 chr2L + chr2L_8160759_8160816 chr2L_8160758_8160759;chr2L_8160816_8160817 chr2L_8160690_8160758;chr2L_8160817_8160891 0.00 0.00 1.11 2.30 5.26 0.00 1.12 1.71 0.00 0.00 0.00 0.00 2.90 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 3.81 0.00 0.00 1.52 0.00 1.49 1.75 0.00 2.63 0.00 0.68 0.84 0.00 0.00 0.00 0.00 0.00 0.61 3.60 0.69 0.00 0.00 0.00 0.00 0.00 0.00 1.80 0.90 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.76 K alternative_donor TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748981_19749882;chr2R_19748981_19750012;chr2R_19748981_19749783 chr2R_19748981_19749899 chr2R_19748884_19748980;chr2R_19750013_19750013 3.03 0.00 0.00 1.54 10.34 5.56 3.03 1.20 1.09 11.11 3.12 2.38 2.86 7.89 6.82 5.33 7.69 4.76 2.00 4.17 2.44 5.88 4.35 4.88 12.12 2.33 7.69 0.00 2.94 3.03 0.00 0.00 4.69 1.52 3.57 2.70 0.00 10.71 2.33 4.23 4.08 2.41 3.03 7.69 0.00 2.44 8.00 0.00 2.50 8.57 0.00 6.45 4.00 0.00 3.64 0.00 2.33 0.00 K intron_retention scrib,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22416440_22424298 chr3R_22416439_22416440;chr3R_22424298_22424299 chr3R_22416340_22416439;chr3R_22424299_22424434 25.00 NA NA NA NA NA NA 31.25 40.00 NA 66.67 35.71 NA NA NA NA NA NA NA 23.08 NA 7.41 NA NA NA NA NA NA 25.00 NA NA 15.38 22.22 NA NA NA 22.73 20.00 35.71 25.00 NA 53.85 NA 25.00 0.00 23.08 NA 26.92 NA NA NA NA NA NA NA NA NA 15.38 K cassette Thd1,I_chr4_572026_572616,I_chr4_573081_573191,RI_chr4_574364_578068 chr4 - chr4_572007_578068 chr4_572007_572616;chr4_574368_578068 chr4_572617_574367 chr4_571926_572006;chr4_578069_578121 100.00 100.00 100.00 99.17 98.15 100.00 99.07 99.38 99.44 97.06 98.11 99.15 97.53 98.65 98.68 100.00 98.65 100.00 100.00 99.26 98.00 94.92 98.41 97.56 100.00 98.39 100.00 96.97 96.00 100.00 100.00 100.00 100.00 99.31 100.00 97.78 100.00 100.00 100.00 100.00 100.00 98.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 94.74 100.00 98.85 94.74 100.00 100.00 K intron_retention CG5346 chr3R - chr3R_18352806_18354117 chr3R_18352805_18352806;chr3R_18354117_18354118 chr3R_18352510_18352805;chr3R_18354118_18354404 0.00 0.00 0.00 5.68 0.00 0.00 1.11 1.01 0.76 0.00 0.00 2.17 0.00 0.00 3.39 0.00 0.00 4.35 1.56 2.70 0.00 13.33 0.00 2.20 0.00 0.00 1.72 5.26 0.00 0.00 0.00 0.00 0.00 2.60 0.00 1.72 0.00 0.00 0.00 1.89 0.94 1.79 1.92 0.00 0.00 0.00 1.59 2.15 2.68 0.00 0.00 2.44 0.00 0.00 0.00 0.00 1.41 0.00 K alternative_donor betaTub56D,I_chr2R_15336252_15336648,I_chr2R_15336252_15337409,I_chr2R_15336252_15338966 chr2R - chr2R_15336252_15338966 chr2R_15336252_15338937 chr2R_15336154_15336251;chr2R_15338967_15339039 100.00 99.83 99.89 99.94 100.00 100.00 100.00 100.00 99.94 99.82 100.00 100.00 100.00 99.85 100.00 100.00 100.00 100.00 100.00 99.95 100.00 99.93 99.94 99.91 100.00 100.00 100.00 100.00 99.41 100.00 99.88 100.00 100.00 100.00 100.00 99.88 99.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.92 99.91 100.00 100.00 99.92 99.81 99.87 100.00 100.00 99.91 99.90 99.89 K intron_retention hrg chr2R - chr2R_15555984_15556751 chr2R_15555983_15555984;chr2R_15556751_15556752 chr2R_15555859_15555983;chr2R_15556752_15557317 5.11 4.65 5.26 10.59 4.26 9.52 6.67 6.09 5.05 5.41 7.55 7.14 3.08 3.39 6.78 5.45 5.00 10.00 5.88 9.00 5.56 4.65 3.51 4.65 8.89 5.17 7.14 0.00 12.86 3.77 4.49 5.26 3.12 4.58 5.88 5.00 4.62 2.86 9.52 4.48 5.26 6.25 9.62 1.59 10.71 5.00 6.90 4.00 4.55 0.00 7.55 3.33 0.00 NA 4.60 6.06 0.00 2.52 K alternative_donor CG31716,I_chr2L_10397163_10398034,RI_chr2L_10397195_10398034,I_chr2L_10397648_10398034 chr2L + chr2L_10396850_10398034;chr2L_10396983_10398034 chr2L_10396922_10398034 chr2L_10398035_10398134;chr2L_10396810_10396849 0.00 10.00 4.76 3.57 0.00 0.00 0.00 1.75 3.08 0.00 8.33 2.04 0.00 6.67 0.00 3.39 4.35 0.00 3.57 2.50 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 5.13 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11306 chr3L + chr3L_21619479_21619531 chr3L_21619478_21619479;chr3L_21619531_21619532 chr3L_21619348_21619478;chr3L_21619532_21619724 0.00 0.00 0.00 7.32 0.00 0.00 1.82 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 4.76 1.67 0.00 NA 0.00 0.00 2.56 2.94 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention Crag,I_chrX_8494280_8494352 chrX + chrX_8489216_8489280 chrX_8489215_8489216;chrX_8489280_8489281 chrX_8488944_8489215;chrX_8489281_8489494 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1516,I_chr2R_5743716_5743899,I_chr2R_5746990_5747874,RI_chr2R_5752988_5757801 chr2R - chr2R_5747958_5748029 chr2R_5747957_5747958;chr2R_5748029_5748030 chr2R_5747875_5747957;chr2R_5748030_5748063 52.05 56.76 35.90 45.45 48.15 60.00 65.00 44.44 45.45 51.06 55.00 56.52 47.37 42.11 51.43 55.17 42.31 50.00 53.33 49.09 52.38 35.48 48.15 51.72 76.47 79.07 56.41 NA 62.50 52.38 43.48 61.11 29.55 44.83 43.33 76.92 50.00 58.82 57.14 57.50 62.50 53.95 35.29 45.45 40.00 47.06 45.16 58.73 45.28 70.00 51.06 52.63 54.55 45.45 58.54 57.89 56.25 61.54 K intron_retention CREI_chr2L_9938511_9938564,CG5853,RI_chr2L_9942818_9944294,I_chr2L_9944682_9947179 chr2L - chr2L_9942111_9942168 chr2L_9942110_9942111;chr2L_9942168_9942169 chr2L_9941700_9942110;chr2L_9942169_9942407 3.36 0.00 0.00 1.47 2.27 0.00 2.22 4.17 3.76 0.00 4.35 1.20 8.00 2.94 4.17 14.58 6.45 3.64 0.00 3.42 4.76 0.00 10.10 4.65 5.00 0.00 0.00 6.12 4.08 5.26 2.94 12.00 0.00 2.00 5.66 1.37 3.53 11.54 6.74 10.26 8.70 3.30 0.00 3.92 0.00 7.27 3.45 NA 6.35 11.36 3.12 0.00 0.00 0.00 0.00 2.94 0.78 0.00 K alternative_acceptor CG9302,I_chr2L_13377616_13377699 chr2L - chr2L_13376976_13377038 chr2L_13376991_13377038 chr2L_13377039_13377615;chr2L_13376485_13376975 0.00 0.00 0.56 0.00 0.00 0.65 0.41 0.40 0.29 0.00 0.72 0.30 0.00 0.00 0.43 0.00 0.00 0.00 0.53 0.47 0.00 0.69 0.00 0.46 0.70 0.52 0.00 0.00 0.50 0.85 0.00 0.00 0.93 0.37 0.00 0.00 0.00 0.00 0.47 0.00 0.88 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.51 0.75 0.00 0.00 0.00 0.00 0.46 0.50 K intron_retention CG11092 chrX + chrX_13718248_13718320 chrX_13718247_13718248;chrX_13718320_13718321 chrX_13717444_13718247;chrX_13718321_13718949 0.00 0.00 1.18 0.39 1.64 0.64 0.00 0.79 0.80 0.00 0.00 0.61 1.56 0.00 0.65 2.03 0.00 0.00 1.80 0.00 0.00 1.23 0.65 0.00 0.00 0.00 0.84 2.78 0.00 0.00 0.00 0.00 0.45 1.59 0.00 0.00 0.32 0.42 0.49 0.44 0.00 1.14 0.75 0.00 0.64 0.55 0.00 0.00 0.85 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042891_5043077;chr2L_5042891_5042983 chr2L_5042891_5042960 chr2L_5042835_5042890;chr2L_5043078_5043083 65.85 67.27 63.79 58.33 64.86 61.90 72.09 62.20 61.42 55.17 63.64 62.96 51.28 56.90 60.00 60.53 50.00 71.05 61.02 63.50 51.11 69.77 67.24 64.15 65.85 72.34 78.26 61.11 74.29 73.81 61.02 74.36 72.50 63.74 67.44 65.85 73.47 69.44 77.55 72.73 77.50 60.64 56.25 81.25 74.47 66.67 68.63 86.54 66.67 48.98 66.10 48.94 58.82 76.47 55.22 66.67 65.45 76.79 K intron_retention Cip4,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4324221_4324283 chr3L_4324220_4324221;chr3L_4324283_4324284 chr3L_4324144_4324220;chr3L_4324284_4324447 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.83 0.85 0.00 0.00 0.78 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.41 3.85 0.00 0.00 0.00 0.00 0.00 0.48 0.90 1.88 0.00 0.00 0.00 0.00 0.00 0.32 0.80 0.00 0.00 1.48 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 K alternative_acceptor CG2862 chr2L + chr2L_2770192_2770272 chr2L_2770192_2770258 chr2L_2770181_2770191;chr2L_2770273_2770400 99.39 98.97 99.04 99.17 98.90 100.00 99.32 99.24 99.56 100.00 99.11 100.00 100.00 100.00 99.17 98.47 100.00 100.00 100.00 100.00 98.99 100.00 100.00 99.23 100.00 98.97 100.00 100.00 100.00 100.00 99.02 99.18 99.49 99.24 98.80 100.00 100.00 100.00 100.00 98.96 100.00 99.50 98.67 98.86 99.49 99.39 99.19 99.27 99.14 99.11 99.00 99.05 99.35 100.00 99.17 100.00 100.00 98.17 K intron_retention Shawn_Tyler,CG14213 chrX + chrX_19534124_19534180 chrX_19534123_19534124;chrX_19534180_19534181 chrX_19533929_19534123;chrX_19534181_19534272 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 3.28 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention dlg1,I_chrX_11298230_11299306 chrX + chrX_11283815_11284208 chrX_11283814_11283815;chrX_11284208_11284209 chrX_11283738_11283814;chrX_11284209_11284573 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 98.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.44 100.00 100.00 100.00 98.25 100.00 100.00 100.00 100.00 98.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor l(2)37Ce,RI_chr2L_19132432_19132483,I_chr2L_19134277_19143634,RI_chr2L_19145845_19146761 chr2L + chr2L_19132417_19132483 chr2L_19132432_19132483 chr2L_19132484_19132583;chr2L_19132357_19132416 0.00 0.00 0.00 3.70 0.00 0.00 0.91 0.00 1.26 0.00 1.92 0.00 0.00 1.72 1.61 0.00 0.00 0.00 1.85 1.32 0.00 4.35 2.38 1.75 0.00 0.00 6.06 14.29 3.23 0.00 6.90 0.00 0.00 0.00 0.00 NA 1.33 0.00 2.50 2.63 NA 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 2.00 3.57 2.53 0.00 K intron_retention I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,I_chr3R_17183927_17185306,I_chr3R_17184319_17185084,I_chr3R_17184319_17185284,noncoding_18168,RI_chr3R_17184792_17185306,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,RI_chr3R_17189607_17189988,I_chr3R_17190098_17190207,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17184792_17185084 chr3R_17184791_17184792;chr3R_17185084_17185085 chr3R_17184692_17184791;chr3R_17185085_17185148 35.71 NA NA 22.22 NA NA 45.45 40.00 38.10 NA NA 36.84 35.71 NA NA 46.15 NA NA 36.36 28.57 NA NA NA NA NA NA NA NA NA NA 14.71 NA NA 25.00 NA NA NA NA NA 46.15 NA 31.25 NA NA NA 35.71 NA NA 26.67 NA NA NA NA NA NA 27.27 NA 7.14 K alternative_donor lola,I_chr2R_6375932_6376866,RI_chr2R_6376649_6376866,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6376649_6419543 chr2R_6376649_6376866 chr2R_6376621_6376648;chr2R_6419544_6419624 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Glycogenin,noncoding_8326 chr2R + chr2R_17088164_17092117 chr2R_17088163_17088164;chr2R_17092117_17092118 chr2R_17088158_17088163;chr2R_17092118_17092428 0.00 0.00 0.00 4.35 0.00 0.00 10.81 0.00 7.69 NA NA 0.00 10.00 NA 0.00 7.41 0.00 NA 11.11 10.00 NA NA 0.00 0.00 NA 3.12 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA 0.00 NA NA 6.25 NA 5.00 0.00 0.00 0.00 NA 4.76 NA 5.56 0.00 0.00 NA NA NA 7.41 NA NA NA K jcn_only_AD Fas1,E_chr3R_12458491_12460799,I_chr3R_12458491_12460807,I_chr3R_12460976_12461267 chr3R + chr3R_12460105_12461267;chr3R_12458491_12461267 chr3R_12460817_12461267 chr3R_12461268_12461367 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 2.70 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K jcn_only_AD CG40191,I_chr2RHet_391475_391828,I_chr2RHet_392279_392824 chr2RHet + chr2RHet_391004_391180;chr2RHet_391127_391180 chr2RHet_390972_391180 chr2RHet_391181_391278;chr2RHet_390957_390971 0.00 0.00 1.85 0.00 1.92 0.00 0.00 0.00 0.88 NA 0.00 0.00 0.00 0.00 1.69 0.00 0.00 2.33 0.00 0.96 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 K intron_retention CG8051 chrX - chrX_19197126_19197445 chrX_19197125_19197126;chrX_19197445_19197446 chrX_19195833_19197125;chrX_19197446_19197568 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 2.67 0.00 0.00 0.00 0.00 0.00 1.19 0.00 1.92 0.00 0.00 2.04 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 K intron_retention TepII,I_chr2L_7696207_7698724,I_chr2L_7697158_7697976,I_chr2L_7697582_7697976 chr2L - chr2L_7697158_7698724 chr2L_7697157_7697158;chr2L_7698724_7698725 chr2L_7697058_7697157;chr2L_7698725_7698824 4.01 0.00 2.78 NA 0.00 11.11 7.89 5.88 6.06 NA NA 6.67 NA 3.85 6.25 5.56 0.00 4.76 11.54 5.13 5.00 2.04 0.00 0.00 0.00 NA 2.94 15.38 NA 10.53 2.27 NA 4.17 6.00 0.00 NA 9.09 0.00 9.09 9.09 0.00 6.00 5.56 0.00 0.00 0.00 0.00 6.67 5.26 0.00 7.41 0.00 NA NA 0.00 NA 0.00 0.00 K multi_cassette sxc,RI_chr2R_1203985_1204044,I_chr2R_1203985_1205289,I_chr2R_1208121_1213310,I_chr2R_1213177_1213308 chr2R + chr2R_1203985_1213308 chr2R_1203985_1207752;chr2R_1207822_1207923;chr2R_1208121_1213308 chr2R_1207753_1207821;chr2R_1207924_1208120 chr2R_1203885_1203984;chr2R_1213309_1213408 100.00 95.00 100.00 96.88 100.00 95.45 100.00 97.67 100.00 100.00 100.00 97.92 100.00 100.00 96.15 98.21 100.00 100.00 100.00 100.00 91.67 100.00 90.32 100.00 100.00 100.00 100.00 90.00 92.31 100.00 100.00 100.00 91.67 98.04 100.00 95.00 100.00 94.12 92.86 100.00 88.89 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 90.00 85.71 97.14 100.00 100.00 94.74 K intron_retention Rheb,I_chr3R_1395050_1395121,RI_chr3R_1395455_1395563,CRMP chr3R + chr3R_1395194_1395296 chr3R_1395193_1395194;chr3R_1395296_1395297 chr3R_1395122_1395193;chr3R_1395297_1395504 0.00 0.00 0.00 1.49 0.00 0.00 0.00 1.45 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.75 0.00 3.39 0.00 1.83 11.43 4.08 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 N alternative_donor CG16971,CG33229,I_chr3L_225856_225909,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_224184_224972;chr3L_224886_224972 chr3L_224779_224972 chr3L_224973_225140;chr3L_224174_224183 10.30 2.00 12.20 34.35 8.68 10.30 0.54 10.10 5.37 15.25 0.55 5.83 5.50 0.85 8.85 11.92 6.23 6.15 6.29 5.57 10.71 6.08 45.74 24.03 2.40 1.71 4.38 5.15 27.72 12.32 11.89 10.60 15.57 8.27 16.90 36.69 18.05 27.56 33.20 7.56 2.21 5.83 1.35 12.30 14.19 21.81 18.48 8.23 7.57 43.12 33.33 14.29 16.67 32.43 5.68 20.45 23.81 1.86 K cassette Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21124522_21127849 chr2L_21124522_21125346;chr2L_21125440_21127849 chr2L_21125347_21125439 chr2L_21124443_21124521;chr2L_21127850_21128062 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 K intron_retention CG34408,I_chrX_10120689_10121004 chrX + chrX_10118539_10118951 chrX_10118538_10118539;chrX_10118951_10118952 chrX_10118382_10118538;chrX_10118952_10119092 4.45 5.71 6.67 14.29 NA 0.00 11.11 NA 12.50 6.25 NA 0.00 NA NA 0.00 NA NA 0.00 NA 12.20 NA 6.90 4.08 5.00 8.82 NA 2.70 7.41 0.00 4.55 NA 25.00 8.00 4.76 0.00 3.33 2.86 0.00 3.57 0.00 6.67 3.23 NA 3.33 0.00 10.71 12.50 NA 4.35 10.00 0.00 NA 0.00 9.09 4.35 5.56 3.23 NA K jcn_only_AA CG32582,I_chrX_15730402_15730457 chrX + chrX_15730242_15730457 chrX_15730242_15730314 chrX_15730223_15730241;chrX_15730458_15730474 90.00 NA NA NA NA NA NA NA 76.00 NA NA 71.43 NA NA NA 95.83 NA NA NA NA NA NA 90.91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 91.30 NA 85.19 NA NA NA 92.31 NA 90.00 100.00 NA 80.77 NA 86.11 NA 94.59 93.33 NA 88.46 86.49 NA K alternative_acceptor Tsp42Ef,I_chr2R_2912947_2914327 chr2R + chr2R_2912947_2914488 chr2R_2912947_2914327 chr2R_2912847_2912946;chr2R_2914489_2914662 0.48 0.00 0.00 0.58 0.00 0.00 0.00 1.31 0.85 0.00 0.00 0.41 1.30 0.00 0.00 0.72 0.00 0.00 0.00 0.67 0.00 1.66 0.89 0.58 0.81 1.11 0.52 1.18 0.00 0.00 0.00 0.92 0.00 0.77 0.79 0.76 0.41 0.00 0.00 0.00 0.00 1.28 2.50 0.57 0.00 0.45 0.52 0.00 0.53 0.69 0.48 0.00 0.93 0.54 0.00 0.53 0.74 1.37 K alternative_acceptor Dip1 chrX + chrX_9053110_9053172 chrX_9053110_9053169 chrX_9052653_9053109;chrX_9053173_9053405 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RpL27A,E_chr2L_4457411_4457977,I_chr2L_4458058_4458120 chr2L - chr2L_4457319_4457374 chr2L_4457318_4457319;chr2L_4457374_4457375 chr2L_4457311_4457318;chr2L_4457375_4457410 96.82 95.83 94.74 97.62 90.00 96.00 100.00 95.83 93.55 95.83 96.15 90.24 94.44 NA 100.00 94.74 100.00 94.12 94.44 98.18 90.00 97.22 100.00 96.15 97.56 98.39 100.00 95.24 99.75 93.75 100.00 95.65 100.00 100.00 94.74 100.00 95.00 95.00 95.24 97.06 98.66 92.11 94.44 100.00 96.43 97.44 94.44 100.00 96.88 97.50 96.77 100.00 96.97 96.88 100.00 90.00 100.00 97.78 K intron_retention sba,I_chr3R_19721149_19722571 chr3R - chr3R_19721220_19722784 chr3R_19721219_19721220;chr3R_19722784_19722785 chr3R_19720204_19721219;chr3R_19722785_19722913 75.00 NA NA 47.83 NA NA 88.89 69.23 90.91 NA 60.00 75.00 NA NA 70.00 NA NA NA NA 76.47 NA 71.70 NA NA NA NA 77.78 91.67 50.00 77.78 NA NA 83.33 NA NA 92.31 50.00 NA 87.50 69.23 NA 66.67 NA 77.78 75.00 NA NA 75.00 70.00 NA 66.67 NA NA NA 90.91 NA NA NA K alternative_acceptor Tob,RI_chrX_15977009_15983293 chrX - chrX_15974736_15974836 chrX_15974739_15974836 chrX_15974837_15974990;chrX_15973052_15974735 87.50 91.67 83.33 NA 70.00 77.78 90.00 NA 82.61 NA NA 91.30 NA 90.91 NA 88.89 NA NA NA 90.00 NA 87.50 90.91 81.82 87.50 NA 88.89 NA NA NA 75.00 NA NA 66.67 NA 80.00 86.96 90.00 82.35 92.86 NA 80.00 NA 85.71 NA NA NA 100.00 85.71 90.91 90.00 100.00 NA NA 80.00 NA NA NA K intron_retention osa chr3R - chr3R_13521834_13522091 chr3R_13521833_13521834;chr3R_13522091_13522092 chr3R_13521645_13521833;chr3R_13522092_13522308 64.29 57.78 66.67 64.29 62.22 72.50 63.83 64.41 64.49 65.52 66.67 62.96 68.18 71.05 78.18 56.52 53.19 65.79 58.97 60.98 63.04 73.96 62.34 66.04 56.25 63.04 62.26 66.00 74.67 70.37 66.67 78.79 71.03 64.18 61.82 59.68 44.93 49.09 62.16 77.24 76.19 65.96 63.16 60.00 73.68 72.92 64.29 77.54 62.96 54.76 59.02 48.39 62.79 59.09 69.64 63.33 66.67 76.12 K intron_retention sol chrX + chrX_21224966_21225120 chrX_21224965_21224966;chrX_21225120_21225121 chrX_21224924_21224965;chrX_21225121_21225440 41.42 NA NA 55.56 NA NA NA 53.33 40.91 NA NA 36.36 NA NA NA 33.33 NA NA NA 30.77 NA 60.00 57.14 36.36 NA NA 54.55 NA NA NA NA NA NA 63.64 NA NA 46.15 NA 33.33 53.33 NA 41.18 NA 30.77 NA NA NA 27.27 41.67 NA NA NA NA NA NA NA NA NA K jcn_only_AD RpL15 chr3LHet + chr3LHet_2398018_2398127;chr3LHet_2397859_2398127;chr3LHet_2397925_2398127;chr3LHet_2398060_2398127;chr3LHet_2397841_2398127;chr3LHet_2398002_2398127;chr3LHet_2397820_2398127;chr3LHet_2398053_2398127 chr3LHet_2397992_2398127 chr3LHet_2398128_2398454;chr3LHet_2397802_2397819 5.85 13.51 12.50 1.88 18.75 13.04 20.88 2.15 25.35 12.50 2.86 21.05 21.43 12.50 3.08 29.41 4.39 5.45 2.21 18.89 17.95 0.58 14.29 34.78 4.55 1.06 14.81 0.86 4.61 6.25 3.12 2.17 0.34 3.14 2.13 8.14 24.00 NA 30.43 0.42 2.20 4.44 7.87 0.81 1.04 2.84 40.91 0.64 4.90 40.74 34.62 13.04 0.24 21.74 0.85 21.88 23.81 0.24 K alternative_donor S chr2L - chr2L_1062214_1077651 chr2L_1062214_1076834 chr2L_1061234_1062213;chr2L_1077652_1077815 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.63 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD egl chr2R - chr2R_19632138_19633722 chr2R_19632138_19632620 chr2R_19631860_19632137;chr2R_19633723_19634466 1.75 2.13 3.33 1.28 0.00 2.70 1.43 2.22 0.93 3.33 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.07 0.00 1.59 6.25 2.78 0.00 0.00 0.00 0.00 3.92 1.67 0.00 2.78 2.20 2.06 0.00 0.00 5.66 2.78 2.44 2.83 5.41 2.35 0.00 2.08 0.00 2.17 5.41 1.22 1.10 0.00 4.35 4.00 4.76 0.00 1.75 12.00 3.85 2.38 K intron_retention wdb,I_chr3R_23394314_23406731,I_chr3R_23394314_23406794,I_chr3R_23394314_23407159,RI_chr3R_23394314_23407186,I_chr3R_23394314_23407412,I_chr3R_23394314_23407715,I_chr3R_23394314_23407721,RI_chr3R_23406048_23406731,RI_chr3R_23406048_23406794,I_chr3R_23406048_23406928,RI_chr3R_23406048_23407402 chr3R - chr3R_23406048_23407402 chr3R_23406047_23406048;chr3R_23407402_23407403 chr3R_23405948_23406047;chr3R_23407403_23407467 90.91 NA NA NA NA NA 90.00 90.00 90.00 NA 88.89 100.00 NA NA NA NA NA 90.91 NA 87.50 87.50 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 90.91 NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG3321,RI_chr3R_10154615_10155360 chr3R + chr3R_10152850_10152974;chr3R_10152811_10152974;chr3R_10152906_10152974 chr3R_10152911_10152974 chr3R_10152975_10153473;chr3R_10152803_10152810 0.40 1.04 0.34 1.47 0.00 0.00 1.31 0.22 0.62 0.00 0.00 0.24 0.40 0.88 0.27 0.35 0.39 0.00 0.00 0.41 0.00 3.33 0.67 0.00 0.00 0.00 0.00 1.37 1.10 0.00 0.75 0.00 1.49 0.00 0.00 2.33 0.77 1.20 0.52 0.99 3.17 0.14 0.00 1.16 0.00 0.88 0.00 0.00 0.00 0.64 1.71 0.64 1.29 1.37 1.11 1.25 0.68 0.00 K intron_retention CG32425,I_chr3L_20490581_20505036,CG18281,CG17637,CG5078,I_chr3L_20502617_20503129,I_chr3L_20504930_20505036 chr3L + chr3L_20491565_20503129 chr3L_20491564_20491565;chr3L_20503129_20503130 chr3L_20490761_20491564;chr3L_20503130_20503229 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA 7.69 NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA 6.67 6.67 NA NA NA NA NA NA NA NA 0.00 0.00 0.00 0.00 NA 6.90 NA NA 0.00 NA NA 0.00 4.35 NA 0.00 NA NA NA NA NA NA NA K cassette par-1,I_chr2R_15361473_15366246,I_chr2R_15362147_15365120,F_chr2R_15362147_15365138,I_chr2R_15362147_15365165,RI_chr2R_15363358_15365120,I_chr2R_15363358_15366246,I_chr2R_15365210_15370456 chr2R + chr2R_15361473_15366246 chr2R_15361473_15365138;chr2R_15365210_15366246 chr2R_15365139_15365209 chr2R_15361373_15361472;chr2R_15366247_15366346 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Dip1 chrX + chrX_9053110_9053172 chrX_9053110_9053169 chrX_9052653_9053109;chrX_9053173_9053405 23.81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG7177 chr3L - chr3L_21547281_21547480;chr3L_21547281_21547653 chr3L_21547281_21547665 chr3L_21547125_21547280;chr3L_21547666_21547994 4.88 NA NA 0.00 NA 5.00 2.63 4.35 4.08 NA NA 2.56 8.33 NA NA 10.00 NA NA NA 8.82 NA 4.00 0.00 NA NA NA NA NA NA NA 9.09 NA NA 0.00 NA NA 8.70 NA NA 4.76 NA 5.56 NA NA NA NA NA 6.25 9.38 NA 0.00 NA NA NA 13.04 NA NA NA K intron_retention CG11155,I_chr4_1152220_1152710,I_chr4_1152585_1152687 chr4 + chr4_1155928_1155984 chr4_1155927_1155928;chr4_1155984_1155985 chr4_1155829_1155927;chr4_1155985_1156110 100.00 NA 100.00 100.00 NA NA 100.00 91.67 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 100.00 NA K intron_retention cana,cana_CG33695 chr2L + chr2L_11276549_11276604 chr2L_11276548_11276549;chr2L_11276604_11276605 chr2L_11276399_11276548;chr2L_11276605_11276856 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA 6.25 NA 0.00 0.00 12.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA K alternative_acceptor CG31715,I_chr2L_10341933_10342151,I_chr2L_10341933_10342155 chr2L + chr2L_10341933_10342155;chr2L_10341933_10342149 chr2L_10341933_10342151 chr2L_10341833_10341932;chr2L_10342156_10342233 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14642,CG34305 chr3R - chr3R_67421_67476 chr3R_67420_67421;chr3R_67476_67477 chr3R_67357_67420;chr3R_67477_67641 95.00 97.06 100.00 100.00 92.31 95.45 96.97 87.27 94.03 95.65 95.00 94.00 95.24 84.00 93.33 90.62 88.46 92.31 97.06 97.96 85.00 95.24 100.00 92.00 100.00 95.24 97.14 96.30 89.13 96.23 98.11 98.33 97.06 91.30 96.97 100.00 95.74 100.00 93.10 91.67 97.78 96.83 92.31 94.74 90.12 95.00 92.68 97.22 94.12 92.86 90.48 96.30 93.33 88.57 89.74 94.12 89.47 85.71 K intron_retention klett chrX - chrX_21499737_21501093 chrX_21499736_21499737;chrX_21501093_21501094 chrX_21499389_21499736;chrX_21501094_21501123 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 97.06 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 98.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG9319,CG9323 chr2L - chr2L_20752016_20752088 chr2L_20752015_20752016;chr2L_20752088_20752089 chr2L_20749528_20752015;chr2L_20752089_20752385 10.27 NA 7.69 22.73 NA NA 14.29 5.26 4.35 41.67 NA 12.50 NA NA NA 20.00 NA 0.00 NA 7.41 NA 23.08 13.33 6.67 10.53 NA 0.00 16.67 12.50 20.00 14.29 NA 8.51 16.67 0.00 14.29 15.38 NA 10.53 10.00 15.38 0.00 NA NA 6.67 12.00 3.45 NA 0.00 3.03 11.76 NA 0.00 9.09 NA NA 0.00 2.94 K alternative_donor e(y)3,I_chrX_19530503_19530884,I_chrX_19530503_19531405 chrX - chrX_19530503_19531650;chrX_19530503_19530884;chrX_19530503_19532222 chrX_19530503_19531405 chrX_19530403_19530502;chrX_19532223_19532322 5.56 1.72 5.36 7.69 5.88 1.72 7.69 8.42 3.82 4.69 2.63 10.24 7.55 5.36 1.61 3.66 4.08 3.92 3.17 10.08 2.44 5.56 4.50 6.49 6.78 12.00 4.00 7.50 16.07 10.29 1.69 7.14 17.14 3.09 13.85 12.66 2.56 1.23 5.22 9.80 15.79 10.77 8.70 3.95 2.86 12.77 10.00 14.68 8.85 4.55 4.82 1.75 10.00 4.00 4.48 6.06 3.12 17.31 K multi_cassette pho,RI_chr4_1193657_1194431,I_chr4_1193830_1194784,EI_chr4_1193830_1195360,RI_chr4_1193830_1195384,I_chr4_1193830_1201673 chr4 - chr4_1193830_1201673 chr4_1193830_1194784;chr4_1195555_1195607;chr4_1195750_1201673 chr4_1194785_1195554;chr4_1195608_1195749 chr4_1193730_1193829;chr4_1201674_1201773 100.00 100.00 100.00 100.00 66.67 83.33 93.33 100.00 93.75 NA 100.00 85.71 85.71 100.00 100.00 86.67 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 66.67 100.00 K intron_retention CG7033 chrX + chrX_8983632_8984520 chrX_8983631_8983632;chrX_8984520_8984521 chrX_8983417_8983631;chrX_8984521_8985210 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.08 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.40 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 K jcn_only_AD RpL27A,E_chr2L_4457411_4457977,I_chr2L_4458058_4458120 chr2L - chr2L_4458058_4458288;chr2L_4458058_4458274;chr2L_4458058_4458162 chr2L_4458058_4458140 chr2L_4457978_4458057;chr2L_4458289_4458357 1.72 1.10 0.40 0.49 0.25 0.99 0.00 0.23 0.57 1.52 0.59 0.00 1.22 4.67 1.15 0.32 0.40 0.32 0.00 0.42 0.30 3.93 4.44 6.02 2.99 1.50 2.62 4.80 3.81 4.82 3.32 1.19 1.26 0.18 4.35 7.18 3.24 2.15 3.61 5.83 3.85 0.53 0.22 3.54 0.70 3.81 1.81 3.57 0.94 3.40 2.76 2.35 2.36 6.20 0.28 3.62 2.83 1.72 K intron_retention wech,I_chr2R_3373673_3377000,I_chr2R_3373673_3377045,I_chr2R_3373673_3377324,I_chr2R_3376705_3376837 chr2R - chr2R_3373673_3376837 chr2R_3373672_3373673;chr2R_3376837_3376838 chr2R_3373573_3373672;chr2R_3376838_3376937 0.00 0.00 0.00 5.71 10.00 0.00 0.00 1.82 0.00 NA 0.00 0.00 0.00 8.33 0.00 5.00 0.00 0.00 7.69 0.00 7.69 17.65 NA NA NA 0.00 NA NA NA 0.00 3.85 NA 6.06 2.04 NA NA 0.00 NA NA 3.03 NA 0.00 6.90 0.00 NA NA NA 4.17 3.57 NA 0.00 NA NA NA 0.00 NA NA 5.56 K jcn_only_AA WRNexo chr3R - chr3R_14191333_14191393 chr3R_14191336_14191393 chr3R_14191394_14191498;chr3R_14191130_14191332 78.79 80.95 59.09 72.22 NA NA 82.14 80.39 78.05 NA NA 78.79 71.43 68.00 75.76 83.33 70.83 NA 85.00 82.22 NA NA 90.00 78.57 NA NA 75.00 NA NA NA NA NA NA 76.47 NA NA 80.00 NA 81.82 66.67 NA 80.49 82.61 NA NA NA 73.91 79.41 79.17 80.00 74.07 78.57 73.33 69.57 90.32 95.00 71.43 92.31 K alternative_donor I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17198803_17199019;chr3R_17198803_17200781 chr3R_17198803_17199052 chr3R_17198703_17198802;chr3R_17200782_17200881 4.35 4.76 5.56 3.57 5.56 10.00 4.55 4.55 5.26 0.00 8.33 3.85 6.25 6.25 7.14 4.35 6.67 5.56 5.56 4.26 0.00 0.00 10.53 4.35 0.00 3.70 5.00 0.00 0.00 0.00 16.67 0.00 0.00 6.06 0.00 0.00 3.70 5.56 5.00 2.56 0.00 6.25 6.67 0.00 0.00 0.00 0.00 2.56 6.45 0.00 4.17 5.88 0.00 8.33 4.17 5.56 6.67 0.00 K jcn_only_AD CG34413,RI_chr2R_20769295_20770153,I_chr2R_20771136_20772048,I_chr2R_20773500_20774745 chr2R + chr2R_20769471_20770153;chr2R_20769150_20770153;chr2R_20769295_20770153 chr2R_20769206_20770153 chr2R_20770154_20770253;chr2R_20769141_20769149 1.69 0.00 1.04 0.88 0.81 0.00 2.88 0.93 1.55 0.00 0.00 2.52 2.70 2.17 5.93 0.00 1.82 0.00 1.23 0.00 4.60 2.50 3.61 3.17 2.74 0.00 8.43 3.92 9.38 2.44 2.70 NA 0.00 0.73 5.13 11.54 3.80 3.49 2.65 0.65 NA 2.59 0.00 0.00 2.63 0.00 0.00 4.88 1.54 3.12 1.33 4.17 5.77 0.00 0.69 0.00 0.00 NA K intron_retention Mtl,I_chr3R_23462559_23463794 chr3R + chr3R_23464262_23464344 chr3R_23464261_23464262;chr3R_23464344_23464345 chr3R_23464101_23464261;chr3R_23464345_23465005 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 4.55 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7816,RI_chr3R_25691122_25694436 chr3R - chr3R_25689859_25689916 chr3R_25689858_25689859;chr3R_25689916_25689917 chr3R_25689421_25689858;chr3R_25689917_25690072 0.63 0.37 1.15 0.00 0.00 1.32 0.52 1.38 0.85 1.04 2.61 1.63 0.00 1.82 0.63 1.98 0.00 0.00 0.00 0.00 1.65 1.38 1.10 0.54 0.00 1.19 3.20 2.90 0.82 0.00 0.61 0.00 1.13 1.59 0.93 0.63 0.59 0.00 0.54 0.89 0.53 1.06 0.00 0.36 0.43 1.08 0.66 1.34 1.20 0.00 0.97 0.00 0.00 0.00 0.65 0.68 0.57 0.52 K alternative_donor msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585733_2586036;chr3L_2585733_2586413 chr3L_2585733_2586402 chr3L_2585639_2585732;chr3L_2586414_2586502 44.00 53.33 47.62 31.82 50.00 55.00 28.21 44.00 35.29 NA 42.11 43.33 28.57 35.29 45.45 36.11 38.46 44.44 35.00 50.00 50.00 43.24 40.00 37.50 NA 35.00 38.89 45.45 28.95 40.91 45.83 50.00 40.74 45.16 38.10 52.17 47.62 44.44 47.06 51.22 36.36 45.45 47.06 48.48 44.44 40.00 50.00 39.02 50.00 42.86 46.67 35.71 58.33 60.00 41.18 46.15 33.33 30.77 K intron_retention dco,RI_chr3R_26883651_26886096,I_chr3R_26884350_26886671,I_chr3R_26884350_26886791,RI_chr3R_26884365_26886096,I_chr3R_26884365_26886798 chr3R - chr3R_26886187_26886791 chr3R_26886186_26886187;chr3R_26886791_26886792 chr3R_26886097_26886186;chr3R_26886792_26886798 38.46 31.25 NA 47.83 54.55 NA 42.86 54.55 35.48 NA NA 37.50 33.33 58.33 35.00 38.71 35.71 22.22 33.33 25.00 NA 41.18 27.27 40.00 NA 60.00 66.67 44.44 48.00 20.00 37.50 NA 36.67 54.55 35.71 37.50 22.73 NA 50.00 44.00 53.85 54.17 45.45 36.84 38.89 36.84 14.29 36.67 50.00 26.67 47.06 38.46 41.18 NA 54.55 NA 20.00 16.67 K jcn_only_AD CG3719,E_chrX_1273406_1273479,I_chrX_1273406_1273486,RI_chrX_1273406_1273763 chrX - chrX_1273406_1274170;chrX_1273406_1273763 chrX_1273406_1273486 chrX_1273306_1273405;chrX_1274171_1274773 2.82 1.43 2.22 0.00 2.27 5.26 1.69 1.69 3.85 3.23 0.00 1.20 0.00 2.86 1.85 9.30 4.17 0.00 4.35 5.10 0.00 4.26 1.82 1.59 8.33 4.08 4.29 6.06 7.14 2.04 14.89 11.11 11.67 1.39 7.41 0.00 0.00 1.75 2.35 6.74 6.00 6.54 2.63 2.82 9.86 2.82 9.33 15.25 2.35 0.00 3.70 0.00 2.44 1.79 2.22 6.49 0.00 14.06 K alternative_donor CG5757,E_chr2R_13981576_13981669,RI_chr2R_13982037_13982093,RI_chr2R_13982244_13982295 chr2R - chr2R_13982037_13982093 chr2R_13982037_13982088 chr2R_13981970_13982036;chr2R_13982094_13982153 96.49 100.00 94.12 88.00 NA 100.00 95.65 94.12 95.56 100.00 93.75 100.00 100.00 94.44 95.00 97.14 90.00 93.33 92.86 98.21 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 81.82 92.86 96.88 90.00 100.00 95.45 100.00 91.67 91.30 94.74 100.00 96.55 100.00 93.75 96.43 94.23 93.75 93.33 88.89 95.45 100.00 100.00 100.00 100.00 94.12 95.24 96.77 96.97 K alternative_acceptor CG18605 chr2R + chr2R_14865147_14865327 chr2R_14865147_14865248 chr2R_14865024_14865146;chr2R_14865328_14865445 88.19 NA 75.00 88.89 NA NA 90.00 71.43 81.25 NA NA 84.21 NA 81.82 87.50 92.86 NA NA 90.00 60.00 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA 90.00 NA NA NA NA NA NA NA 70.59 100.00 NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA 85.71 NA 85.71 85.71 K intron_retention CG11266,RI_chr2L_7033019_7033182,RI_chr2L_7033019_7034180,RI_chr2L_7033019_7034764,I_chr2L_7034274_7034764,I_chr2L_7034274_7035406,RI_chr2L_7034911_7035074,I_chr2L_7051093_7051366 chr2L + chr2L_7033019_7034198 chr2L_7033018_7033019;chr2L_7034198_7034199 chr2L_7032919_7033018;chr2L_7034199_7034273 33.24 NA NA NA NA NA NA 42.11 50.00 NA NA 56.25 30.77 NA NA 35.71 NA NA NA 35.71 NA NA NA NA NA NA NA NA NA 12.50 NA 10.53 14.29 46.67 NA NA NA NA NA 17.86 NA 44.44 NA NA NA 8.33 NA 10.64 37.50 NA NA NA NA NA NA NA NA 0.00 K alternative_acceptor CG6051 chr3R - chr3R_22952341_22952415 chr3R_22952344_22952415 chr3R_22952416_22953488;chr3R_22951169_22952340 100.00 100.00 100.00 100.00 87.50 NA 100.00 100.00 100.00 100.00 90.00 100.00 NA NA 100.00 NA 100.00 NA NA 95.65 100.00 100.00 100.00 96.43 95.24 100.00 95.83 100.00 100.00 100.00 NA 92.86 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 95.00 100.00 86.67 100.00 96.77 100.00 90.91 100.00 100.00 95.24 100.00 93.33 K intron_retention CG17018,R_chr2L_22312023_22363414,CEI_chr2L_22325847_22356902 chr2L + chr2L_22354970_22363429 chr2L_22354969_22354970;chr2L_22363429_22363430 chr2L_22354872_22354969;chr2L_22363430_22363514 4.26 3.57 9.23 3.93 1.54 6.06 9.63 7.10 5.81 7.69 9.68 2.59 6.67 10.11 5.63 10.97 3.66 9.09 4.95 1.62 10.53 0.00 3.23 0.00 1.64 4.29 3.37 5.56 0.00 3.64 5.26 0.00 2.22 7.56 6.98 3.39 0.00 4.26 1.72 2.44 0.00 5.10 6.45 5.88 10.53 5.56 2.50 10.00 8.43 0.00 2.60 3.23 1.52 0.00 5.10 4.76 3.17 3.28 K alternative_acceptor CG9740,RI_chr3R_5083859_5083977,I_chr3R_5083907_5083977 chr3R - chr3R_5083907_5083977;chr3R_5083911_5083977 chr3R_5083859_5083977 chr3R_5083978_5084077;chr3R_5083807_5083858 2.70 0.00 5.88 0.00 0.00 0.00 5.00 0.00 2.94 0.00 7.14 2.86 0.00 0.00 5.00 0.00 0.00 0.00 0.00 2.70 0.00 5.26 5.00 0.00 7.14 0.00 0.00 0.00 0.00 7.14 0.00 6.67 5.56 0.00 0.00 5.88 5.00 5.26 3.45 4.35 0.00 0.00 8.33 0.00 5.26 0.00 4.55 0.00 0.00 3.45 4.17 8.33 5.56 5.26 0.00 4.55 4.55 3.45 K intron_retention CG15210 chrX + chrX_10733489_10733545 chrX_10733488_10733489;chrX_10733545_10733546 chrX_10733068_10733488;chrX_10733546_10734011 8.83 NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA 10.53 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 7.14 NA NA NA NA 0.00 NA NA 25.00 NA NA NA NA NA NA NA NA NA 0.00 K intron_retention CG3731,E_chr3R_10717341_10717506 chr3R + chr3R_10716149_10716417 chr3R_10716148_10716149;chr3R_10716417_10716418 chr3R_10716056_10716148;chr3R_10716418_10716624 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon CG31064,RI_chr3R_23056388_23064246,I_chr3R_23069667_23070365 chr3R - chr3R_23056388_23058194 chr3R_23057831_23058194,chr3R_23057922_23058194 chr3R_23056290_23056387 chr3R_23056483_23057830 chr3R_23058195_23058597 15.38 18.75 13.89 33.33 12.00 9.68 37.14 14.29 13.51 27.78 12.90 11.11 19.05 14.29 16.22 19.51 10.00 15.15 15.62 11.96 15.38 28.57 16.33 18.18 14.29 14.29 21.05 30.00 25.00 22.22 7.69 16.22 16.07 11.32 17.86 35.48 20.51 20.69 12.96 17.91 14.58 12.50 12.50 10.64 21.95 15.38 8.33 18.60 13.43 21.88 12.77 20.00 10.26 16.22 11.63 13.64 8.47 11.59 K intron_retention Dad,I_chr3R_12893363_12894192,I_chr3R_12898717_12898778 chr3R + chr3R_12880085_12880773 chr3R_12880084_12880085;chr3R_12880773_12880774 chr3R_12879745_12880084;chr3R_12880774_12880896 35.00 NA NA 33.33 NA NA NA 30.77 36.36 NA NA NA NA NA NA 43.75 NA NA NA 23.08 NA NA NA NA NA NA NA NA NA NA NA NA NA 35.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 37.50 NA NA NA NA NA NA NA NA NA K intron_retention I_chrX_11910759_11910811,CG15735 chrX + chrX_11913975_11914039 chrX_11913974_11913975;chrX_11914039_11914040 chrX_11913858_11913974;chrX_11914040_11914171 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 4.76 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 5.13 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.40 K alternative_acceptor CG17838,I_chr3R_16625404_16631668 chr3R + chr3R_16628274_16631671 chr3R_16628274_16631668 chr3R_16628255_16628273;chr3R_16631672_16631768 94.12 100.00 90.91 95.24 NA NA 100.00 100.00 94.12 88.89 NA 90.00 NA NA NA 88.89 NA 88.89 NA 93.33 NA NA 92.31 85.71 NA 87.50 81.82 100.00 100.00 100.00 NA NA 93.33 81.25 87.50 100.00 75.00 NA 100.00 100.00 NA 100.00 NA 80.00 NA NA NA 95.45 100.00 NA 100.00 77.78 NA NA 100.00 NA NA 100.00 K alternative_donor woc,I_chr3R_23089174_23089688,I_chr3R_23089174_23089695,I_chr3R_23096096_23096561 chr3R - chr3R_23089174_23089498;chr3R_23089174_23089695 chr3R_23089174_23089688 chr3R_23089074_23089173;chr3R_23089696_23089772 3.12 3.57 10.81 6.54 3.23 2.04 2.11 5.31 1.18 5.26 3.45 2.04 10.29 2.99 2.38 4.63 1.75 3.17 5.06 3.45 4.84 4.65 2.44 3.12 2.17 3.03 2.00 2.56 5.13 3.08 1.08 3.33 3.26 1.69 4.55 2.27 1.64 2.13 4.62 5.88 2.63 2.86 1.64 3.12 9.76 2.63 6.25 2.91 2.74 7.41 1.45 2.33 3.23 5.56 2.17 3.12 9.38 5.77 K intron_retention MED18,CG14803,CG14805 chrX + chrX_1760172_1760241 chrX_1760171_1760172;chrX_1760241_1760242 chrX_1759942_1760171;chrX_1760242_1760528 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.56 0.00 1.22 3.12 0.00 3.45 6.17 6.94 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 1.61 0.67 1.41 0.00 0.72 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.73 0.00 0.00 1.54 0.00 0.00 0.00 0.00 K intron_retention Rbf chrX - chrX_694551_694629 chrX_694550_694551;chrX_694629_694630 chrX_694411_694550;chrX_694630_695087 0.00 0.00 0.00 15.15 0.00 6.67 6.67 0.00 4.65 0.00 NA 0.00 NA NA 0.00 6.25 0.00 NA NA 3.92 NA 0.00 5.00 3.57 5.56 NA 0.00 10.00 9.09 0.00 14.29 0.00 5.88 0.00 0.00 0.00 3.77 0.00 6.38 5.00 6.90 5.13 0.00 0.00 0.00 8.00 9.09 1.85 2.94 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 K multi_cassette CG32795,RI_chrX_2677454_2677799,I_chrX_2677459_2682526,I_chrX_2677729_2677799,I_chrX_2679163_2681784 chrX - chrX_2677459_2682526 chrX_2677459_2677799;chrX_2678180_2678302;chrX_2678521_2678580;chrX_2678721_2679032;chrX_2679163_2682526 chrX_2677800_2678179;chrX_2678303_2678520;chrX_2678581_2678720;chrX_2679033_2679162 chrX_2677453_2677458;chrX_2682527_2682626 100.00 100.00 100.00 86.67 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 92.31 100.00 100.00 100.00 96.15 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 95.65 100.00 100.00 95.24 100.00 100.00 K jcn_only_AA Dredd,RI_chrX_529342_529426 chrX - chrX_528085_528157 chrX_528090_528157 chrX_528158_528520;chrX_527935_528084 100.00 100.00 NA NA NA NA 100.00 100.00 94.87 NA NA 96.55 NA NA NA NA NA NA NA 96.30 NA NA 95.00 100.00 NA NA NA NA NA NA 96.97 NA NA NA NA NA 100.00 NA 100.00 NA NA 97.37 NA NA 100.00 NA NA NA 100.00 100.00 100.00 NA NA NA NA 95.00 100.00 NA K alternative_acceptor Sec16,I_chrX_12501913_12502010,I_chrX_12502899_12502973 chrX + chrX_12502899_12502970;chrX_12502899_12502973 chrX_12502899_12502967 chrX_12502799_12502898;chrX_12502974_12503073 86.21 88.24 80.00 83.33 91.67 83.33 87.50 81.25 90.62 80.95 80.00 91.18 88.89 94.12 85.71 86.21 91.67 86.67 82.61 83.78 100.00 82.61 85.71 93.33 93.75 90.91 81.48 93.75 85.00 92.31 86.21 82.14 83.33 82.86 77.78 88.89 92.86 75.00 86.67 84.62 86.49 83.33 92.31 79.31 90.00 87.50 90.00 85.07 84.62 82.61 88.89 87.50 77.78 100.00 79.31 77.27 85.71 90.20 K jcn_only_AA lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22817840_22817891;chr2L_22817840_22817943 chr2L_22817840_22817968 chr2L_22817740_22817839;chr2L_22817969_22817982 0.00 0.00 1.85 8.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 2.13 0.00 1.61 0.00 0.00 1.14 0.00 1.19 0.00 0.00 NA 2.44 2.78 1.45 0.00 1.89 0.00 2.13 0.00 0.00 1.82 0.00 0.00 0.00 K cassette capricious,RI_chr3L_13222241_13229504 chr3L + chr3L_13244312_13268661 chr3L_13244312_13258279;chr3L_13258493_13268661 chr3L_13258280_13258492 chr3L_13244297_13244311;chr3L_13268662_13269555 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24357181_24357240 chr3R_24357180_24357181;chr3R_24357240_24357241 chr3R_24357002_24357180;chr3R_24357241_24357282 0.00 NA NA 0.00 NA 0.00 0.00 0.00 4.17 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA NA 2.56 NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA K alternative_acceptor CG2811,I_chr2R_20828961_20829772 chr2R - chr2R_20827527_20827594 chr2R_20827537_20827594 chr2R_20827595_20827646;chr2R_20827429_20827526 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 94.12 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 K intron_retention CG11006,F_chr3L_12799159_12799339 chr3L + chr3L_12805321_12805379 chr3L_12805320_12805321;chr3L_12805379_12805380 chr3L_12805050_12805320;chr3L_12805380_12805550 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 K intron_retention tai,I_chr2L_9191814_9206231 chr2L + chr2L_9243546_9243647 chr2L_9243545_9243546;chr2L_9243647_9243648 chr2L_9243235_9243545;chr2L_9243648_9243900 90.48 90.48 85.19 96.15 85.71 85.71 90.00 94.59 90.74 91.67 79.17 86.44 85.71 95.45 96.88 95.45 85.00 93.18 100.00 93.06 88.46 95.35 91.89 92.73 90.00 94.74 88.14 84.15 86.90 89.47 85.19 85.19 90.14 90.48 92.31 94.52 86.27 93.33 91.86 83.13 78.95 96.72 96.15 85.71 84.62 86.11 90.48 74.00 90.57 91.67 93.06 80.00 92.31 90.00 91.43 96.30 96.77 66.67 K alternative_acceptor MESR6,RI_chr3L_19086421_19086498 chr3L + chr3L_19086421_19086762 chr3L_19086421_19086498 chr3L_19086321_19086420;chr3L_19086763_19087328 0.00 4.35 0.00 4.84 0.00 0.00 5.26 4.44 2.99 0.00 0.00 1.82 5.26 0.00 0.00 3.03 0.00 4.35 0.00 1.54 0.00 0.00 4.55 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 2.70 4.35 0.00 0.00 0.00 0.00 2.38 0.00 3.39 0.00 0.00 0.00 0.00 0.00 NA 0.00 5.00 0.00 4.76 NA 0.00 0.00 0.00 4.35 0.00 K jcn_only_AA Msp-300,I_chr2L_5197634_5197866 chr2L + chr2L_5203743_5204462 chr2L_5203743_5204450 chr2L_5203116_5203742;chr2L_5204463_5204592 61.45 64.38 68.06 49.72 69.18 72.12 61.54 56.97 66.16 48.55 28.46 62.69 65.26 74.25 63.48 64.06 68.24 51.48 60.66 68.83 25.58 58.55 60.36 60.56 62.73 70.34 59.88 82.24 53.76 64.80 52.94 68.48 57.89 67.05 65.91 42.74 62.32 70.27 69.03 60.91 54.64 64.17 68.80 60.96 72.38 61.45 59.70 61.11 58.10 72.06 59.15 60.00 54.19 60.98 71.77 57.23 55.28 53.49 K jcn_only_AA Lap1 chr2R + chr2R_10823524_10823631;chr2R_10823524_10823596 chr2R_10823524_10823599 chr2R_10823191_10823523;chr2R_10823632_10823803 8.35 NA 8.70 8.00 NA NA 14.29 10.64 5.88 NA NA 12.90 NA NA NA 6.25 NA NA 3.85 4.44 NA 9.68 6.90 NA NA NA 3.12 NA NA 12.00 NA NA 5.00 9.76 NA 10.00 NA NA 10.00 6.45 NA 13.79 9.09 12.00 NA NA NA 5.26 13.16 NA 6.25 NA NA NA 0.00 NA NA 7.14 K intron_retention Rbp1-like,R_chrX_13277657_13278332 chrX - chrX_13277657_13278332 chrX_13277656_13277657;chrX_13278332_13278333 chrX_13277557_13277656;chrX_13278333_13278432 23.08 NA NA 0.00 NA NA NA NA 20.00 NA NA 43.75 NA NA NA NA NA NA NA 30.77 NA 7.14 NA NA NA NA NA NA 18.75 25.00 NA NA 15.38 35.71 NA NA NA NA NA 30.00 NA 23.08 NA 26.67 15.38 14.29 NA 20.51 25.00 NA NA NA NA NA NA NA NA 26.32 K jcn_only_AD Cdk4,RI_chr2R_12471503_12471656 chr2R + chr2R_12467202_12468346;chr2R_12467432_12468346;chr2R_12467241_12468346;chr2R_12467275_12468346;chr2R_12467474_12468346;chr2R_12467227_12468346;chr2R_12467261_12468346;chr2R_12467039_12468346 chr2R_12467225_12468346 chr2R_12468347_12468520;chr2R_12467030_12467038 0.00 0.00 0.00 0.00 NA 0.00 3.23 0.00 0.00 NA 3.33 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K intron_retention HmgZ chr2R - chr2R_17585810_17585892 chr2R_17585809_17585810;chr2R_17585892_17585893 chr2R_17584971_17585809;chr2R_17585893_17586105 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG11241,noncoding_14208,l(3)04053 chr3L - chr3L_22727837_22728454 chr3L_22727837_22728008 chr3L_22727770_22727836;chr3L_22728455_22728479 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 100.00 100.00 NA NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA K jcn_only_AD Hph chr3R + chr3R_1090925_1092474 chr3R_1091360_1092474 chr3R_1092475_1092754;chr3R_1090787_1090924 90.00 94.59 89.58 69.49 79.55 94.87 92.00 86.89 88.46 67.86 96.77 97.26 NA 90.91 89.58 95.12 88.46 87.88 93.02 89.06 91.43 89.19 90.91 84.85 NA 88.57 88.00 NA NA 100.00 92.50 NA 86.36 92.86 NA 81.82 90.00 96.30 89.74 91.18 73.08 92.05 95.65 94.29 90.00 96.15 77.42 84.85 94.67 92.00 89.58 87.50 NA 100.00 92.16 86.36 NA NA K jcn_only_AD Ku80 chr2L - chr2L_15770993_15771081 chr2L_15770993_15771049 chr2L_15770897_15770992;chr2L_15771082_15771134 100.00 96.00 100.00 95.74 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 96.30 95.45 100.00 98.51 NA 100.00 100.00 NA NA 100.00 96.30 100.00 93.55 NA 100.00 NA NA 100.00 NA NA 100.00 NA 96.00 100.00 96.30 100.00 95.24 100.00 NA 100.00 100.00 95.83 95.92 100.00 100.00 NA NA NA 95.65 NA 100.00 100.00 K alternative_acceptor Prosalpha7 chr2R - chr2R_5734400_5734577 chr2R_5734411_5734577 chr2R_5734578_5734697;chr2R_5734141_5734399 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.19 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG6982,CG17618,CG17618_CG6982 chr3R + chr3R_18554856_18554930 chr3R_18554855_18554856;chr3R_18554930_18554931 chr3R_18554751_18554855;chr3R_18554931_18555006 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD slgA,I_chrX_21253735_21253820 chrX + chrX_21245768_21247146;chrX_21245487_21247146 chrX_21245849_21247146 chrX_21247147_21247693;chrX_21245405_21245486 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD BM-40-SPARC,I_chr3R_22696095_22696231,I_chr3R_22696095_22696291,I_chr3R_22696095_22697413 chr3R - chr3R_22696095_22697647;chr3R_22696095_22697413;chr3R_22696095_22696231 chr3R_22696095_22696291 chr3R_22695995_22696094;chr3R_22697648_22697767 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.06 0.02 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.03 0.01 0.00 0.00 0.02 0.04 0.04 0.00 0.03 0.00 0.04 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.03 0.05 0.05 0.00 0.02 0.02 0.00 0.08 0.02 0.00 0.11 0.01 0.03 0.00 0.02 0.00 0.00 0.00 0.03 0.01 0.06 K jcn_only_AA CG1021,I_chr3R_2217711_2231099,I_chr3R_2217711_2231390,RI_chr3R_2217711_2231463,I_chr3R_2217742_2218601,I_chr3R_2217742_2219453,I_chr3R_2218465_2231390,RI_chr3R_2218465_2231463,I_chr3R_2218682_2231463,I_chr3R_2219634_2231390,I_chr3R_2231383_2231463 chr3R - chr3R_2218465_2218601;chr3R_2217742_2218601 chr3R_2217711_2218601 chr3R_2218602_2218681;chr3R_2217642_2217710 84.62 85.71 78.26 77.42 NA NA NA 81.48 84.21 NA NA 82.05 76.00 NA 92.86 90.48 NA NA NA 95.12 92.59 87.18 92.68 88.00 79.41 72.73 74.07 68.57 NA NA NA NA 86.11 78.72 NA 74.07 81.82 85.71 84.62 83.64 NA 84.38 NA 81.08 NA NA 87.88 NA 77.78 87.04 86.84 87.50 97.62 NA 84.62 80.95 98.31 86.96 N jcn_only_AD CG17255,I_chrX_10366177_10366615,RI_chrX_10366177_10367270 chrX - chrX_10366177_10367360;chrX_10366177_10367458;chrX_10366177_10367270;chrX_10366177_10368085;chrX_10366177_10366615 chrX_10366177_10367201 chrX_10366077_10366176;chrX_10368086_10368118 10.33 12.96 7.69 12.90 11.76 12.37 9.52 21.58 14.52 9.89 10.71 11.67 15.18 8.80 7.05 20.23 14.29 7.45 9.80 17.17 11.24 7.30 11.90 6.47 15.49 8.76 5.08 16.13 3.52 3.85 9.23 7.61 5.12 12.63 16.81 12.24 13.14 13.48 10.00 11.28 5.21 10.33 16.00 10.85 7.50 4.42 11.11 4.27 8.88 9.86 9.72 18.31 9.84 10.00 12.57 10.00 14.29 4.32 K intron_retention Hrb87F chr3R - chr3R_9482848_9484183 chr3R_9482847_9482848;chr3R_9484183_9484184 chr3R_9482571_9482847;chr3R_9484184_9484235 75.00 NA NA 96.67 NA NA NA 81.82 NA NA NA 83.33 NA NA NA NA NA NA NA 90.91 NA NA NA 66.67 NA NA NA 88.89 NA NA NA NA 90.00 NA NA 70.00 NA NA 70.00 62.50 NA 75.00 NA NA NA 60.00 NA 77.78 NA NA NA NA 46.15 54.55 NA NA 77.78 41.38 K intron_retention Spargel,RI_chr3R_252723_254271,noncoding_14534 chr3R - chr3R_252348_252444 chr3R_252347_252348;chr3R_252444_252445 chr3R_252282_252347;chr3R_252445_252550 53.85 60.00 40.00 32.00 43.75 53.85 52.63 52.00 51.43 60.00 66.67 60.87 50.00 40.00 50.00 50.00 40.00 41.67 53.33 48.94 NA 57.14 57.14 56.25 81.82 70.00 55.56 62.50 50.00 36.84 60.00 NA 44.44 47.83 52.63 76.47 55.56 58.82 62.50 66.67 57.14 52.00 53.85 62.50 NA 50.00 75.00 28.12 50.00 77.78 70.00 60.00 NA 66.67 41.67 72.73 NA 26.32 K jcn_only_AD Cdc42,I_chrX_19591186_19591967,I_chrX_19591567_19591967,I_chrX_19591671_19591967 chrX + chrX_19591186_19591967;chrX_19591259_19591967 chrX_19591567_19591967 chrX_19591968_19592067;chrX_19591086_19591185 0.00 0.13 0.11 0.00 0.37 0.00 0.17 0.00 0.20 0.22 0.00 0.16 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.11 0.21 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.17 0.00 0.00 0.23 0.14 0.24 0.10 0.00 0.07 0.16 0.11 0.22 0.00 0.34 0.19 0.00 0.30 0.25 0.00 0.00 0.23 0.10 0.41 0.00 0.00 K intron_retention CG15100 chr2R - chr2R_14735339_14735398 chr2R_14735338_14735339;chr2R_14735398_14735399 chr2R_14735196_14735338;chr2R_14735399_14736550 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor pds5,RI_chr2R_7915738_7915799,I_chr2R_7922306_7922992 chr2R + chr2R_7915738_7916057 chr2R_7915738_7915799 chr2R_7915638_7915737;chr2R_7916058_7916160 21.54 21.43 20.69 30.36 33.33 28.57 34.00 8.00 20.00 20.00 25.00 23.40 45.45 26.32 16.67 20.69 25.00 36.84 33.33 11.27 18.18 19.05 13.43 17.39 26.47 25.93 30.77 31.03 32.00 25.00 21.05 18.18 21.54 19.15 22.22 28.21 22.45 15.38 16.98 18.64 44.44 15.87 28.57 17.39 25.00 12.00 12.50 22.73 18.75 33.33 18.60 18.75 13.04 14.29 21.88 25.00 20.00 23.08 K intron_retention CG11141,p47,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3350202_3350290 chr2R_3350201_3350202;chr2R_3350290_3350291 chr2R_3349917_3350201;chr2R_3350291_3350753 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.97 0.00 2.74 1.80 0.00 0.00 0.00 3.33 11.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 K intron_retention Arp14D,RI_chrX_16444583_16446372,I_chrX_16444630_16446372,RE_chrX_16445264_16446372 chrX - chrX_16444499_16446372 chrX_16444498_16444499;chrX_16446372_16446373 chrX_16444483_16444498;chrX_16446373_16446472 2.73 2.94 4.20 3.85 1.68 2.02 9.79 2.70 2.66 1.77 1.48 4.78 9.00 2.94 1.57 4.12 0.00 2.73 4.40 2.14 0.00 3.77 3.38 2.04 7.14 3.61 3.23 3.30 3.50 2.15 3.45 1.15 1.23 2.42 1.53 8.16 2.50 2.78 2.80 3.76 6.80 1.69 3.90 2.33 0.00 0.58 2.02 0.75 3.63 2.76 2.83 1.85 0.00 3.08 3.42 1.27 1.56 0.53 K cassette CG10353,I_chrX_11775936_11778830,I_chrX_11778617_11778830,RI_chrX_11780885_11780988 chrX - chrX_11777655_11780988;chrX_11775936_11780988 chrX_11777655_11778830,chrX_11775936_11778830;chrX_11779138_11780988 chrX_11778831_11779137 chrX_11775836_11775935;chrX_11780989_11781085 15.00 13.64 19.44 14.29 14.29 22.22 22.64 16.28 14.04 17.78 13.79 15.71 6.67 20.00 15.00 20.37 18.92 32.35 13.16 32.50 9.52 26.53 10.10 17.11 16.67 14.29 11.11 9.76 9.71 12.33 14.81 12.28 12.31 13.79 15.91 15.62 12.06 13.51 12.94 11.11 13.89 18.28 18.92 6.98 20.34 15.73 22.92 15.00 19.67 17.31 13.70 11.54 21.54 14.29 14.29 17.31 26.39 27.06 K alternative_donor CG3621,noncoding_21543,I_chrX_2066779_2066838 chrX + chrX_2066737_2066838;chrX_2066739_2066838 chrX_2066779_2066838 chrX_2066839_2066938;chrX_2066679_2066736 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpS16,RI_chr2R_18493796_18494013,I_chr2R_18494146_18494441 chr2R + chr2R_18493675_18493751 chr2R_18493674_18493675;chr2R_18493751_18493752 chr2R_18493560_18493674;chr2R_18493752_18493793 26.95 26.32 16.67 22.22 NA 17.65 55.00 21.43 27.91 26.32 NA 22.50 46.15 18.18 39.13 31.03 15.38 NA 15.38 32.50 46.15 37.14 40.00 34.78 56.25 55.56 75.00 29.41 52.78 33.33 61.54 12.50 22.22 20.00 31.25 38.89 28.12 NA 50.00 6.59 37.93 23.81 NA 15.25 27.59 18.18 18.52 21.88 24.44 11.11 47.83 17.65 4.71 29.41 16.67 32.00 18.18 11.84 K jcn_only_AA Prp8,I_chr2R_8050245_8050389 chr2R - chr2R_8050217_8050389 chr2R_8050245_8050389 chr2R_8050390_8050489;chr2R_8050145_8050216 0.00 0.00 0.95 0.00 2.38 1.19 0.00 0.76 1.27 4.35 0.00 0.55 1.12 0.00 0.00 0.76 0.00 0.00 0.00 1.15 0.00 0.00 1.00 2.33 3.45 0.00 0.00 NA 0.00 0.00 2.30 0.00 0.45 0.66 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 1.39 0.00 0.00 0.00 0.00 1.23 NA 1.09 0.00 6.67 NA 1.04 0.00 NA 0.00 K intron_retention AGO2 chr3L + chr3L_15553679_15553740 chr3L_15553678_15553679;chr3L_15553740_15553741 chr3L_15553308_15553678;chr3L_15553741_15553871 0.72 0.37 1.32 1.54 0.00 0.00 0.72 0.82 1.49 0.00 0.00 0.72 1.48 0.69 0.00 2.66 0.00 0.56 1.26 1.67 1.31 0.75 0.85 0.00 1.77 0.00 1.75 4.76 3.20 0.57 0.48 0.00 0.00 2.43 1.26 0.00 0.54 0.94 0.00 1.15 0.00 1.43 0.00 1.43 0.78 1.17 0.00 1.32 0.47 0.00 0.56 0.00 0.00 0.31 1.22 1.52 0.00 2.60 K jcn_only_AA Mtch,RI_chr3L_184729_185366,I_chr3L_185367_185925 chr3L + chr3L_184670_184777 chr3L_184670_184774 chr3L_184665_184669;chr3L_184778_184854 73.91 NA NA NA NA NA NA 70.37 NA NA NA NA NA NA NA NA NA NA NA 73.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 81.48 NA 65.62 NA NA NA NA NA 85.00 75.00 NA NA NA NA NA NA NA NA 73.91 K jcn_only_AA CG10737 chr2R + chr2R_15062814_15063752;chr2R_15062814_15063770 chr2R_15062814_15063692 chr2R_15062592_15062813;chr2R_15063771_15063852 94.90 93.46 92.40 94.38 94.62 94.41 77.22 94.31 93.01 91.18 95.16 95.73 95.97 92.86 93.01 97.13 95.83 97.18 95.49 94.54 90.48 91.67 96.74 96.45 97.12 98.58 98.55 90.16 94.90 95.88 95.31 94.37 91.71 95.28 96.64 97.60 98.09 93.06 95.16 96.55 95.68 94.57 93.75 96.79 83.52 96.49 96.10 94.50 93.95 99.04 95.45 91.67 93.41 96.30 96.02 94.67 94.66 94.23 K intron_retention CG1578,I_chrX_11705375_11705673,I_chrX_11705375_11707320,RI_chrX_11709573_11710335,I_chrX_11710380_11710454 chrX - chrX_11705375_11705684 chrX_11705374_11705375;chrX_11705684_11705685 chrX_11705275_11705374;chrX_11705685_11705773 5.21 8.33 5.26 0.00 0.00 2.78 10.34 11.54 5.26 NA 0.00 5.88 10.53 8.70 4.65 0.00 0.00 5.71 6.67 2.50 7.14 2.00 4.92 6.00 6.25 6.25 13.51 0.00 2.04 0.00 5.56 4.76 2.75 5.80 4.35 5.17 5.33 11.63 5.63 4.35 0.00 8.20 7.41 0.00 2.99 3.77 7.27 6.45 6.33 3.23 8.51 0.00 0.00 0.00 5.26 3.12 6.45 4.48 K intron_retention Rip11,E_chrX_18532733_18533695,RI_chrX_18530353_18530870,RI_chrX_18544139_18544185 chrX - chrX_18531820_18532278 chrX_18531819_18531820;chrX_18532278_18532279 chrX_18531668_18531819;chrX_18532279_18533496 1.62 1.16 0.86 1.28 1.75 0.71 2.44 1.73 1.70 2.61 1.74 2.40 1.18 3.18 1.41 1.82 1.81 1.41 2.48 1.37 0.29 5.66 1.49 0.47 2.04 1.77 1.66 2.43 5.88 2.05 1.20 2.23 1.10 1.60 1.51 1.58 2.04 1.66 1.55 2.42 1.91 1.96 0.88 2.81 1.55 2.05 0.57 3.07 1.62 0.96 1.36 1.95 1.02 1.02 1.54 0.88 0.60 1.45 K intron_retention CG3548 chr2R + chr2R_20487909_20487983 chr2R_20487908_20487909;chr2R_20487983_20487984 chr2R_20487430_20487908;chr2R_20487984_20488503 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Iswi chr2R + chr2R_8524243_8524328;chr2R_8524243_8524316 chr2R_8524243_8524348 chr2R_8524226_8524242;chr2R_8524349_8524495 89.01 89.29 94.74 89.29 94.00 96.30 86.30 92.42 94.02 82.35 100.00 92.06 86.84 81.08 88.37 89.01 93.48 90.32 92.73 88.46 92.59 73.68 87.50 92.59 66.67 75.68 80.95 81.82 46.67 94.44 78.79 83.33 75.00 93.94 85.71 60.00 90.24 80.95 94.12 86.96 NA 90.41 89.29 89.74 NA 93.33 95.24 78.95 84.93 83.33 96.55 84.78 NA NA 89.58 88.89 95.00 83.33 K intron_retention CG15611,I_chr2R_12996782_13000822 chr2R + chr2R_12998006_13000822 chr2R_12998005_12998006;chr2R_13000822_13000823 chr2R_12997672_12998005;chr2R_13000823_13000909 5.98 13.33 0.00 6.25 0.00 0.00 9.52 2.00 6.98 NA 0.00 7.41 0.00 6.67 10.34 8.70 18.75 21.43 8.70 12.24 14.29 NA 0.00 0.00 NA 8.70 NA NA NA NA 8.33 NA NA 5.71 0.00 NA NA NA NA 11.11 0.00 8.89 9.52 12.50 0.00 0.00 0.00 0.00 12.50 0.00 0.00 NA NA NA 2.94 NA 0.00 0.00 K alternative_donor cul-2,RI_chr2L_21657668_21657832,noncoding_4226,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21657777_21657832;chr2L_21657742_21657832 chr2L_21657668_21657832 chr2L_21657833_21657932;chr2L_21657659_21657667 68.00 66.67 60.61 35.56 46.67 54.17 52.17 50.00 48.39 75.76 68.00 50.00 36.84 48.00 60.61 50.67 45.00 68.00 52.94 59.46 62.96 84.73 85.71 67.44 81.03 60.00 80.00 81.00 78.49 83.53 47.06 71.93 87.91 59.02 85.71 83.84 70.83 75.00 80.85 85.53 87.50 61.82 36.84 85.88 84.38 80.65 77.08 72.94 55.93 78.38 76.92 63.89 64.00 79.63 55.56 74.00 73.58 59.09 K alternative_acceptor gro chr3R + chr3R_21871550_21872260 chr3R_21871550_21872257 chr3R_21871451_21871549;chr3R_21872261_21872314 98.95 100.00 100.00 100.00 100.00 97.14 100.00 98.41 98.86 100.00 97.14 98.78 100.00 97.62 97.78 98.44 96.88 98.15 100.00 100.00 97.37 98.04 100.00 98.41 96.55 100.00 98.41 100.00 100.00 100.00 97.92 100.00 97.06 98.61 100.00 100.00 98.46 98.39 100.00 98.55 97.37 96.51 97.30 97.44 100.00 100.00 97.73 100.00 98.95 98.39 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 K intron_retention CG12734,I_chr3L_3183812_3183932,I_chr3L_3184645_3185360 chr3L + chr3L_3184038_3184248 chr3L_3184037_3184038;chr3L_3184248_3184249 chr3L_3183933_3184037;chr3L_3184249_3185272 7.41 10.00 NA 26.32 NA NA 5.56 9.09 10.00 0.00 NA 13.33 NA NA 5.56 12.50 NA NA 14.29 0.00 12.50 7.41 6.00 13.79 14.29 NA 10.00 0.00 9.09 4.35 0.00 0.00 13.04 0.00 NA 10.00 4.44 4.00 3.64 25.71 0.00 3.45 NA 0.00 0.00 7.69 0.00 NA 20.00 12.50 8.11 7.69 NA 4.00 17.65 5.41 0.00 NA K alternative_acceptor CG16953,Sep2,RI_chr3R_16413718_16413845 chr3R - chr3R_16413180_16413845 chr3R_16413718_16413845 chr3R_16413846_16413945;chr3R_16413080_16413179 0.87 0.71 0.94 1.63 0.47 1.04 1.07 1.08 0.90 1.29 0.50 0.73 1.85 0.55 0.42 0.38 0.54 0.57 0.95 0.65 0.53 8.51 0.97 1.05 0.81 0.45 0.90 3.55 0.98 0.87 1.93 1.40 0.88 0.68 1.13 0.36 0.78 0.68 0.58 1.49 1.26 0.82 0.57 0.68 1.12 1.09 0.65 1.18 0.85 1.12 1.03 1.26 0.34 0.34 1.43 0.56 0.36 0.77 K intron_retention CG7546 chr3L + chr3L_7507455_7508147 chr3L_7507454_7507455;chr3L_7508147_7508148 chr3L_7506918_7507454;chr3L_7508148_7508681 2.34 1.67 0.00 0.00 0.00 3.77 1.10 7.04 1.91 0.00 0.00 9.00 1.92 4.65 9.09 0.00 0.00 3.92 0.00 2.34 0.00 2.92 1.95 1.67 2.73 5.00 2.72 0.00 1.80 2.96 0.00 2.60 5.69 2.17 2.78 3.49 1.60 1.43 1.93 2.86 2.38 3.03 5.41 1.52 0.00 3.03 1.60 4.85 2.97 3.10 0.00 2.44 5.49 2.67 5.26 0.00 0.00 5.33 K intron_retention ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13414821_13414880 chr2R_13414820_13414821;chr2R_13414880_13414881 chr2R_13414719_13414820;chr2R_13414881_13414944 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 K intron_retention Cg25C chr2L + chr2L_5034982_5035063 chr2L_5034981_5034982;chr2L_5035063_5035064 chr2L_5034013_5034981;chr2L_5035064_5036208 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Ncc69,I_chr3L_12364701_12364860 chr3L - chr3L_12369216_12369549 chr3L_12369216_12369536 chr3L_12369101_12369215;chr3L_12369550_12369716 94.12 100.00 93.33 100.00 100.00 94.12 88.89 96.00 93.02 NA 100.00 96.55 100.00 100.00 100.00 100.00 100.00 92.31 93.33 96.97 100.00 NA 90.00 93.33 NA 90.91 91.67 NA NA 91.67 75.00 80.00 95.00 96.00 90.91 87.50 100.00 93.75 86.96 94.74 NA 96.00 92.86 94.44 100.00 87.50 87.50 90.48 88.89 90.91 95.45 100.00 78.57 NA 90.48 100.00 100.00 94.12 K alternative_donor Aats-gly,CG6854 chr3L + chr3L_15088286_15088373 chr3L_15088312_15088373 chr3L_15088374_15090790;chr3L_15088282_15088285 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.74 0.00 0.00 0.00 0.00 0.00 4.88 0.46 0.91 0.00 0.00 0.36 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.78 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 K alternative_acceptor CG10880,CG15386_CG42371 chr2L - chr2L_2215460_2215514;chr2L_2215454_2215514 chr2L_2215457_2215514 chr2L_2215515_2216288;chr2L_2215021_2215453 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA NA 11.11 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 K intron_retention cul-4,RI_chr2R_3993482_3993536 chr2R - chr2R_3993445_3993521 chr2R_3993444_3993445;chr2R_3993521_3993522 chr2R_3993382_3993444;chr2R_3993522_3993839 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 2.35 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.38 0.00 0.00 3.23 3.77 0.00 0.00 8.33 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG9253,snoRNA:Me18S-A469 chr2L + chr2L_21143823_21144011 chr2L_21143823_21143996 chr2L_21143564_21143822;chr2L_21144012_21145146 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.81 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.47 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 1.05 K alternative_donor CG15173,RI_chr2L_19044304_19044369 chr2L - chr2L_19043884_19043945;chr2L_19043884_19043935 chr2L_19043884_19043931 chr2L_19043535_19043883;chr2L_19043946_19044083 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA 14.29 NA NA NA 0.00 NA NA NA 0.00 NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 0.00 NA K alternative_donor TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748984_19749899;chr2R_19748984_19749783 chr2R_19748984_19750012 chr2R_19748884_19748983;chr2R_19750013_19750013 8.57 10.00 11.11 11.11 8.70 11.43 6.45 13.51 7.87 6.67 6.90 11.39 11.76 9.09 20.00 7.35 11.11 2.78 9.09 8.14 13.16 10.00 7.32 3.03 6.67 12.50 11.76 4.55 6.67 3.33 28.57 8.00 7.14 10.77 7.41 6.25 24.14 8.33 12.12 6.90 4.88 10.67 9.38 3.33 14.81 8.57 21.74 2.22 7.89 13.79 8.57 8.70 8.00 0.00 7.84 4.55 5.71 9.62 K intron_retention CG3011,I_chrX_5808514_5808613 chrX - chrX_5808437_5808613 chrX_5808436_5808437;chrX_5808613_5808614 chrX_5808420_5808436;chrX_5808614_5808683 2.86 3.47 3.62 2.88 2.04 3.57 6.74 2.21 3.07 1.95 0.98 2.49 11.48 2.08 1.23 4.08 2.06 1.67 3.81 4.01 0.00 6.48 3.32 3.55 4.46 4.35 3.78 1.67 3.31 3.88 3.62 4.80 4.43 2.67 4.90 11.34 2.43 1.32 2.95 3.72 3.39 2.34 0.00 0.85 4.52 2.66 2.42 5.03 2.28 2.67 2.17 2.42 1.61 2.61 1.97 2.86 1.49 2.43 K intron_retention Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045316_16046104 chr3L_16045315_16045316;chr3L_16046104_16046105 chr3L_16045216_16045315;chr3L_16046105_16046204 100.00 100.00 100.00 100.00 NA 100.00 100.00 90.91 96.00 NA 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 93.33 100.00 NA 100.00 100.00 NA NA 91.67 100.00 93.75 88.89 100.00 91.67 NA 100.00 100.00 100.00 100.00 90.00 NA NA 100.00 NA 100.00 90.00 92.31 NA NA 100.00 100.00 95.45 NA 91.67 100.00 100.00 NA 100.00 NA NA NA K alternative_donor Vap-33-1 chrX + chrX_3843206_3843513;chrX_3843099_3843513;chrX_3843406_3843513;chrX_3843214_3843513 chrX_3843210_3843513 chrX_3843514_3843746;chrX_3843030_3843098 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mbf1,RI_chr3L_16567888_16567952,RI_chr3L_16568077_16568816 chr3L + chr3L_16567853_16567952 chr3L_16567852_16567853;chr3L_16567952_16567953 chr3L_16567829_16567852;chr3L_16567953_16568052 7.51 5.93 8.11 25.24 5.26 8.25 12.54 11.58 4.85 4.71 5.48 7.51 6.67 5.88 12.84 9.84 6.02 6.72 8.94 7.69 8.27 8.43 8.43 11.40 15.22 23.53 28.28 17.51 14.29 5.71 7.59 3.50 7.24 10.48 8.54 8.16 2.24 7.38 6.32 5.84 16.67 6.04 7.41 5.12 3.73 5.19 7.58 9.38 7.17 8.65 11.54 7.30 6.67 9.64 6.76 5.31 7.17 6.49 K jcn_only_AD CG8026,I_chr2R_5074640_5074701 chr2R - chr2R_5074640_5075624;chr2R_5074640_5074701 chr2R_5074640_5074800 chr2R_5074540_5074639 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 K jcn_only_AD CG31716,I_chr2L_10397163_10398034,RI_chr2L_10397195_10398034,I_chr2L_10397648_10398034 chr2L + chr2L_10396850_10398034;chr2L_10396983_10398034 chr2L_10396922_10398034 chr2L_10398035_10398134;chr2L_10396810_10396849 2.17 7.14 5.56 3.57 0.00 0.00 1.02 2.33 2.17 NA 6.90 2.59 1.52 4.23 2.17 2.36 5.17 3.85 4.69 3.03 3.03 3.45 3.33 2.78 0.00 0.00 1.85 NA NA 0.00 2.13 NA 0.00 0.82 3.45 5.41 0.00 3.85 3.23 0.00 NA 3.45 0.00 0.00 NA 0.00 NA 3.03 0.00 0.00 1.30 0.00 NA NA 1.82 0.00 3.57 NA K intron_retention CG17385,I_chr2R_10298790_10298843 chr2R - chr2R_10298790_10298847 chr2R_10298789_10298790;chr2R_10298847_10298848 chr2R_10298690_10298789;chr2R_10298848_10298916 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 1.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 K intron_retention CG7830 chr2L - chr2L_8306841_8306905 chr2L_8306840_8306841;chr2L_8306905_8306906 chr2L_8306630_8306840;chr2L_8306906_8307068 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.96 0.00 0.00 0.00 1.04 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG10277,I_chr3R_2208983_2210253,I_chr3R_2211939_2212057 chr3R + chr3R_2209240_2210702;chr3R_2208983_2210702 chr3R_2209244_2210702 chr3R_2210703_2210980;chr3R_2208883_2208982 0.77 0.00 0.98 0.00 0.00 0.00 0.00 0.00 1.21 0.00 0.00 0.51 0.00 3.16 0.99 0.60 1.64 1.47 0.00 1.36 0.00 0.91 2.10 0.68 0.00 0.90 0.00 6.38 1.62 1.25 0.77 0.00 0.47 1.46 1.45 1.78 0.47 NA 0.00 0.85 0.62 2.17 0.00 1.47 0.76 1.07 2.14 0.44 1.16 0.00 2.04 1.69 1.04 0.00 0.96 0.00 1.08 0.00 K alternative_donor milt,I_chr2L_7038283_7040472,I_chr2L_7038944_7040472,I_chr2L_7051093_7051366 chr2L + chr2L_7038279_7040472 chr2L_7038944_7040472 chr2L_7040473_7040572;chr2L_7038273_7038278 3.45 5.56 6.67 0.00 0.00 0.00 3.03 3.23 2.44 6.67 0.00 2.94 5.88 0.00 3.85 2.50 NA 5.56 4.17 4.26 6.67 8.70 3.45 4.35 0.00 7.69 9.52 21.05 3.45 0.00 5.00 0.00 3.23 4.65 6.67 5.56 0.00 0.00 8.33 5.13 0.00 3.23 0.00 4.76 NA 0.00 NA 0.00 4.65 NA 0.00 NA NA NA 7.14 NA NA 0.00 K alternative_acceptor Sap47,I_chr3R_11761076_11761674,I_chr3R_11761436_11761674,F_chr3R_11761635_11761698,E_chr3R_11761635_11761703 chr3R + chr3R_11761307_11761561;chr3R_11761307_11761674;chr3R_11761307_11761698 chr3R_11761307_11761703 chr3R_11761299_11761306;chr3R_11761704_11761774 0.00 0.00 4.17 0.00 5.00 0.00 2.94 0.00 1.49 10.00 0.00 2.00 0.00 0.00 3.33 0.00 0.00 0.00 2.94 0.00 8.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 4.17 0.00 0.00 0.00 3.85 2.17 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 3.33 2.08 K intron_retention hang,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16328892_16329177 chrX_16328891_16328892;chrX_16329177_16329178 chrX_16328792_16328891;chrX_16329178_16329187 96.67 95.24 100.00 93.75 91.67 93.75 100.00 100.00 98.00 95.83 93.33 93.33 95.24 100.00 94.44 100.00 100.00 100.00 93.75 94.74 88.24 95.35 100.00 96.67 100.00 92.86 89.74 100.00 96.97 100.00 100.00 94.12 95.83 100.00 94.12 91.30 97.73 94.74 97.73 95.12 90.00 100.00 100.00 97.22 100.00 96.00 100.00 94.12 100.00 88.24 93.55 91.67 100.00 100.00 100.00 95.00 100.00 100.00 K alternative_acceptor CaMKII,RI_chr4_1067398_1067889,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1065875_1067889 chr4_1067398_1067889 chr4_1067890_1067989;chr4_1065782_1065874 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Prosap,I_chr2R_9956417_9957219,I_chr2R_9963748_9979497 chr2R - chr2R_9957983_9979497 chr2R_9957982_9957983;chr2R_9979497_9979498 chr2R_9957857_9957982;chr2R_9979498_9979597 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 K alternative_donor CG7394,I_chr3L_11556335_11556402 chr3L + chr3L_11556201_11556402 chr3L_11556335_11556402 chr3L_11556403_11556502;chr3L_11555961_11556200 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.58 0.00 0.00 0.00 0.00 1.37 1.06 0.71 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Tsp42Ea,CG30159 chr2R + chr2R_2880283_2881883 chr2R_2880283_2881877 chr2R_2880260_2880282;chr2R_2881884_2881989 97.92 95.24 100.00 97.62 100.00 94.12 95.89 100.00 98.63 93.75 100.00 100.00 92.86 100.00 96.55 100.00 96.77 100.00 95.83 100.00 100.00 93.55 97.44 100.00 100.00 100.00 96.67 97.67 100.00 96.00 98.00 100.00 100.00 97.44 96.00 100.00 93.55 100.00 91.67 97.92 100.00 97.92 95.83 97.30 100.00 96.88 97.22 95.24 100.00 97.06 100.00 100.00 95.24 100.00 97.30 100.00 96.88 96.88 K intron_retention Hsc70-4,EI_chr3R_11068693_11068772 chr3R + chr3R_11068450_11070081 chr3R_11068449_11068450;chr3R_11070081_11070082 chr3R_11068381_11068449;chr3R_11070082_11072336 99.71 99.71 99.61 99.90 99.51 99.87 99.88 99.75 99.66 99.25 99.80 99.52 99.71 100.00 99.92 99.70 99.62 99.91 99.76 99.74 99.84 99.70 99.84 99.86 99.85 99.82 99.87 99.85 99.43 99.32 99.57 98.46 99.60 99.77 99.89 99.59 98.93 98.91 99.50 99.13 99.60 99.75 99.78 99.36 99.32 99.33 99.66 98.93 99.60 99.75 99.55 99.71 99.81 100.00 99.73 99.76 99.78 99.26 K intron_retention C1GalTA,I_chr2L_8945896_8950977 chr2L - chr2L_8945535_8946462 chr2L_8945534_8945535;chr2L_8946462_8946463 chr2L_8945358_8945534;chr2L_8946463_8946478 40.00 53.33 40.00 25.93 NA 25.00 53.85 35.29 60.00 NA NA 19.23 47.37 42.86 40.91 23.08 36.36 28.57 48.15 29.73 NA 16.67 NA NA NA 33.33 77.78 41.67 NA NA 11.76 NA NA 44.44 NA 46.15 NA NA NA 46.15 14.29 46.15 42.86 NA NA 13.64 NA 6.90 47.73 30.00 66.67 NA NA NA 33.33 NA 40.00 8.33 K intron_retention RfC4 chr3L - chr3L_4135767_4135818 chr3L_4135766_4135767;chr3L_4135818_4135819 chr3L_4134853_4135766;chr3L_4135819_4136096 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 7.50 3.64 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.79 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention sll chr3R + chr3R_13432052_13432106 chr3R_13432051_13432052;chr3R_13432106_13432107 chr3R_13431835_13432051;chr3R_13432107_13432287 0.00 0.00 5.56 3.45 NA 0.00 0.00 0.00 0.00 NA NA 4.00 0.00 NA 0.00 0.00 NA 0.00 NA 2.33 NA 7.14 10.71 0.00 0.00 14.29 8.33 0.00 20.00 0.00 0.00 NA 0.00 0.00 NA 16.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 K intron_retention CG5746 chr3R - chr3R_20173785_20173868 chr3R_20173784_20173785;chr3R_20173868_20173869 chr3R_20173386_20173784;chr3R_20173869_20174282 61.29 NA 87.50 73.33 63.64 90.00 NA 90.00 52.63 NA 87.50 66.67 NA NA 61.54 NA NA 60.00 63.64 54.29 NA 75.00 56.25 42.86 50.00 70.00 42.11 33.33 70.00 77.78 NA 90.91 72.22 83.33 46.67 57.14 44.44 35.29 60.87 66.67 50.00 53.57 NA 44.44 52.38 43.75 63.64 66.67 73.68 NA 66.67 NA 46.15 38.46 87.50 42.86 60.00 61.29 K alternative_donor Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3295176;chr2R_3294566_3295244;chr2R_3294566_3294634;chr2R_3294566_3294636;chr2R_3294566_3295280;chr2R_3294566_3294642;chr2R_3294566_3294714 chr2R_3294566_3294638 chr2R_3294491_3294565;chr2R_3295281_3295302 8.00 15.38 5.26 21.88 18.18 0.00 8.70 8.70 10.81 12.50 12.50 6.06 15.38 14.29 5.56 4.17 8.33 0.00 0.00 4.88 12.50 6.25 9.52 10.53 13.33 0.00 11.11 6.25 11.76 11.76 0.00 14.29 8.00 8.00 7.69 15.79 5.26 0.00 0.00 7.14 8.33 11.54 7.14 0.00 11.76 6.25 0.00 8.70 6.45 7.69 15.00 14.29 0.00 0.00 9.09 16.67 0.00 3.85 N cassette CG17018 chr2L + chr2L_22365325_22367235 chr2L_22365325_22365376;chr2L_22367174_22367235 chr2L_22365377_22367173 chr2L_22365205_22365324;chr2L_22367236_22367497 100.00 100.00 100.00 88.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 73.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor tra2,I_chr2R_10491279_10491488,REFI_chr2R_10491644_10491701 chr2R - chr2R_10491007_10491488 chr2R_10491431_10491488 chr2R_10491489_10491563;chr2R_10490853_10491006 11.11 15.38 19.35 3.92 5.26 9.52 21.43 18.18 18.33 8.33 16.67 19.72 42.86 22.22 17.39 19.35 11.11 15.00 26.92 9.46 13.64 18.37 8.62 17.07 10.81 26.32 8.11 9.68 12.24 9.26 16.67 7.69 6.09 33.33 7.14 5.77 7.81 6.67 9.09 9.28 9.23 11.11 17.65 18.92 11.11 11.84 8.33 9.09 8.22 10.20 12.77 21.43 7.14 7.27 26.09 10.20 8.70 4.81 N jcn_only_AD CG8229,CG33199 chr2R - chr2R_4836447_4838210;chr2R_4836447_4836515 chr2R_4836447_4837350 chr2R_4835619_4836446;chr2R_4838211_4838296 1.30 0.88 0.00 4.24 0.00 1.61 2.53 1.27 2.60 1.08 2.04 4.60 0.00 3.45 2.44 1.05 0.00 0.00 2.08 2.28 3.23 0.00 1.54 0.76 2.41 1.19 2.83 0.00 6.25 0.00 2.22 0.00 3.37 0.00 2.06 0.00 2.11 0.98 2.87 1.04 2.63 1.98 1.30 1.68 0.00 0.00 0.79 0.93 0.00 3.19 1.54 0.00 2.15 0.00 0.00 0.69 3.60 1.63 K alternative_donor regucalcin,I_chrX_11910759_11910811 chrX + chrX_11906562_11910035 chrX_11906584_11910035 chrX_11910036_11910754;chrX_11906467_11906561 4.00 NA 0.00 4.55 NA NA NA 6.67 4.35 NA NA 4.00 NA NA 0.00 0.00 NA NA NA 11.76 NA NA NA NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA NA NA 12.50 NA 0.00 NA NA NA NA NA NA 5.26 NA NA NA 0.00 NA NA 0.00 0.00 NA K intron_retention CG12128 chr2R + chr2R_5914381_5914455 chr2R_5914380_5914381;chr2R_5914455_5914456 chr2R_5914358_5914380;chr2R_5914456_5915148 79.80 72.73 83.33 60.00 72.73 66.67 NA 77.78 72.22 NA 75.00 68.97 66.67 66.67 64.29 87.50 87.50 66.67 53.85 64.10 88.89 92.86 100.00 100.00 90.91 72.73 100.00 84.62 84.62 NA 57.89 NA 85.71 81.82 NA NA 86.96 76.92 82.61 73.08 63.64 60.87 NA 91.67 70.59 76.47 95.24 91.67 60.00 91.67 93.75 87.50 84.00 100.00 69.23 86.67 92.31 59.09 K alternative_acceptor I_chr2L_6323791_6325172,Gef26,I_chr2L_6330719_6330770,I_chr2L_6330891_6331043 chr2L + chr2L_6330887_6331046 chr2L_6330887_6331043 chr2L_6330791_6330886;chr2L_6331047_6331143 76.92 85.71 NA NA NA NA 78.57 81.82 77.78 NA NA NA NA 77.78 NA NA NA NA NA 75.00 NA 69.23 90.00 NA NA NA 71.43 NA NA NA NA NA NA 75.00 NA 72.73 NA NA NA 72.73 NA 69.23 NA 76.92 NA 76.92 NA NA 92.86 NA 60.00 NA NA NA 75.00 NA 81.82 NA K alternative_donor Pen chr2L + chr2L_10057197_10057621 chr2L_10057205_10057621 chr2L_10057622_10057759;chr2L_10057128_10057196 97.22 100.00 95.65 98.28 95.45 100.00 97.14 98.08 93.94 NA 95.45 97.92 96.67 92.31 100.00 100.00 96.30 100.00 97.30 97.30 95.24 NA 90.91 88.89 90.00 100.00 100.00 NA NA 90.00 100.00 100.00 91.67 97.78 100.00 NA 100.00 NA NA 90.00 100.00 96.00 96.77 87.50 NA 100.00 88.89 100.00 93.62 NA 91.67 100.00 NA NA 96.88 NA NA 100.00 K intron_retention CG6045,I_chr3R_11373181_11373245 chr3R - chr3R_11372392_11372450 chr3R_11372391_11372392;chr3R_11372450_11372451 chr3R_11371657_11372391;chr3R_11372451_11372605 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.50 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.73 1.52 2.44 6.06 6.82 1.77 2.16 3.31 0.83 0.00 0.00 0.87 1.94 0.00 3.03 0.00 0.00 0.00 0.86 6.67 0.54 0.00 0.00 2.80 1.98 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Eb1,I_chr2R_2642491_2642549 chr2R + chr2R_2642623_2642689 chr2R_2642632_2642689 chr2R_2642690_2643135;chr2R_2642550_2642622 3.12 1.78 0.35 2.25 6.48 2.97 4.01 2.86 2.21 0.66 2.83 3.56 2.49 2.32 4.51 3.12 5.46 2.26 2.27 2.45 1.18 4.80 3.78 2.14 3.97 2.99 5.43 8.80 10.07 4.25 4.44 4.06 4.31 3.02 5.04 2.11 2.11 5.33 3.68 2.43 1.32 3.35 1.83 3.55 3.23 3.71 4.17 3.99 2.48 2.26 2.69 4.43 4.74 3.47 1.64 3.11 2.43 3.57 K cassette I_chr3R_19825840_19825904,Miro chr3R - chr3R_19860752_19861335 chr3R_19860752_19860985;chr3R_19861049_19861335 chr3R_19860986_19861048 chr3R_19860087_19860751;chr3R_19861336_19862540 100.00 100.00 94.12 100.00 100.00 100.00 100.00 95.24 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 96.97 100.00 86.96 100.00 100.00 100.00 100.00 100.00 100.00 95.24 95.83 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 95.65 K intron_retention CG10082,E_chr2R_17533874_17544072,I_chr2R_17541516_17542279,I_chr2R_17541573_17542279,I_chr2R_17543813_17543881 chr2R + chr2R_17541569_17542279 chr2R_17541568_17541569;chr2R_17542279_17542280 chr2R_17541473_17541568;chr2R_17542280_17542379 33.33 NA NA NA NA NA 75.00 41.67 62.50 NA NA 29.17 NA NA 50.00 NA NA NA NA 43.48 NA 6.67 31.25 23.53 NA NA 33.33 NA NA NA NA NA NA 58.82 NA NA 22.22 15.79 19.05 41.67 NA 68.42 NA 25.00 14.29 NA 28.57 NA 52.38 NA 38.46 NA NA NA 42.86 20.00 NA NA K intron_retention CG9776 chr3R - chr3R_158200_158293 chr3R_158199_158200;chr3R_158293_158294 chr3R_158012_158199;chr3R_158294_158316 23.08 NA NA NA NA NA NA NA 42.86 NA NA 43.75 NA 53.85 NA 41.67 NA NA NA 35.00 NA 6.67 20.00 NA NA NA 14.29 NA NA NA 10.71 NA 23.08 NA NA 0.00 NA NA NA 22.73 NA 40.00 NA NA NA NA NA NA 41.67 23.08 5.26 NA NA NA NA NA NA NA N jcn_only_AA spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20336550_20339244 chr2L_20336550_20336621 chr2L_20336470_20336549;chr2L_20339245_20339375 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21278430_21281131 chr2L_21278429_21278430;chr2L_21281131_21281132 chr2L_21277782_21278429;chr2L_21281132_21281337 2.86 0.00 NA 33.33 0.00 0.00 10.34 11.11 11.54 5.71 NA 3.45 NA 0.00 5.88 11.76 4.00 NA 4.17 6.06 NA 0.00 6.45 5.08 3.33 NA 5.26 0.00 11.76 2.86 8.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 2.08 3.85 0.00 6.67 0.00 0.00 0.00 0.00 0.00 7.41 7.14 5.13 3.77 5.88 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG2924,I_chrX_2161327_2161790,REI_chrX_2161327_2162919,I_chrX_2163738_2164560,I_chrX_2168373_2168893 chrX - chrX_2161327_2162970 chrX_2161327_2161790 chrX_2161227_2161326;chrX_2162971_2163019 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.99 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 5.13 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 1.59 1.89 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814174;chr2R_2814327_2814894;chr2R_2815654_2816013;chr2R_2816342_2816577;chr2R_2816779_2817327;chr2R_2817604_2817753 chr2R_2814175_2814326;chr2R_2814895_2815653;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817328_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG12946,I_chr3R_5599701_5600032,I_chr3R_5609682_5609889 chr3R - chr3R_5598872_5598922 chr3R_5598871_5598872;chr3R_5598922_5598923 chr3R_5598795_5598871;chr3R_5598923_5598990 21.95 20.00 NA 33.33 30.77 NA 19.05 33.33 25.00 NA NA 29.17 NA 20.83 25.00 30.00 NA NA 25.00 25.00 NA 23.08 0.00 13.33 NA NA 30.00 6.25 3.70 28.57 12.00 12.50 41.67 30.77 14.29 14.29 NA NA NA 19.23 25.00 26.09 14.29 NA NA 15.00 NA 14.81 33.33 6.67 19.05 35.71 NA NA 11.76 NA NA NA K alternative_donor I_chr3R_16141663_16144698,CG5077,I_chr3R_16147605_16147670 chr3R + chr3R_16146174_16147197 chr3R_16146597_16147197 chr3R_16147198_16147358;chr3R_16145951_16146173 12.66 17.03 6.59 6.48 10.42 11.75 12.10 7.43 11.95 15.17 11.64 15.18 15.60 11.88 12.74 18.69 13.55 9.03 10.75 9.36 12.50 11.07 18.03 20.34 22.67 17.23 17.46 20.00 20.82 7.31 10.05 11.64 10.21 12.89 13.87 11.41 21.28 19.38 20.15 9.98 10.48 10.20 12.66 20.00 8.61 11.78 17.80 6.97 12.90 10.76 15.97 19.43 13.86 15.88 10.62 15.18 19.82 5.88 K alternative_donor norpA,I_chrX_4217835_4219380,I_chrX_4219265_4219380 chrX + chrX_4217189_4219380 chrX_4219265_4219380 chrX_4219381_4219480;chrX_4217177_4217188 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA 100.00 K intron_retention CG15118,I_chr2R_15024324_15024455 chr2R - chr2R_15021937_15022387 chr2R_15021936_15021937;chr2R_15022387_15022388 chr2R_15021232_15021936;chr2R_15022388_15023130 2.11 0.00 0.00 6.45 0.00 0.00 14.58 3.57 4.12 0.00 4.44 8.96 2.33 0.00 4.35 0.00 5.56 0.00 0.00 4.21 2.38 4.76 0.00 0.00 0.00 3.23 0.00 4.17 0.00 0.00 0.00 0.00 1.90 4.17 4.08 1.72 2.11 2.50 2.25 2.50 2.47 1.19 0.00 1.79 2.35 0.00 0.00 3.28 3.12 0.00 2.11 0.00 0.00 0.00 3.92 2.78 4.04 4.00 K alternative_acceptor RI_chr2L_8218680_8218853,Pvr,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8223345_8223824 chr2L_8223450_8223824 chr2L_8223825_8223937;chr2L_8223254_8223344 100.00 100.00 100.00 99.67 100.00 100.00 99.59 99.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.19 99.78 100.00 100.00 99.56 100.00 100.00 99.63 100.00 99.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.59 K cassette CG11198,I_chr2R_3873270_3874570,I_chr2R_3873284_3874453,I_chr2R_3873287_3874570 chr2R - chr2R_3872957_3874570 chr2R_3872957_3873106;chr2R_3873284_3874570 chr2R_3873107_3873283 chr2R_3872571_3872956;chr2R_3874571_3874670 66.67 NA 66.67 83.33 NA NA NA 66.67 73.33 83.33 NA 63.64 NA NA NA 50.00 NA NA 66.67 100.00 NA 90.91 NA NA NA NA 71.43 NA 87.50 NA NA NA 83.33 77.78 66.67 80.00 NA NA 55.56 55.56 NA 66.67 NA 42.86 NA NA NA 50.00 62.50 NA NA NA NA NA NA NA NA NA K jcn_only_AD CtBP chr3R + chr3R_8850752_8851110 chr3R_8850767_8851110 chr3R_8851111_8851987;chr3R_8850711_8850751 82.61 89.29 NA NA NA NA NA NA 77.42 NA NA 75.61 NA NA 85.00 NA NA NA NA 86.21 NA 79.31 NA 80.95 NA NA NA NA NA 82.61 NA NA 66.67 NA NA NA 93.55 NA NA 88.46 NA 87.50 NA 80.77 95.45 NA 82.61 NA 82.61 77.50 NA NA NA NA NA NA 86.36 NA K jcn_only_AA CG12404,I_chr2L_12995561_12997461 chr2L - chr2L_12994238_12997461 chr2L_12995561_12997461 chr2L_12997462_12997561;chr2L_12994138_12994237 0.00 0.00 0.56 0.00 0.60 1.18 0.43 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.68 0.37 0.36 0.36 0.00 0.62 0.33 0.00 0.00 0.63 0.57 0.00 1.08 0.00 1.38 0.00 0.00 0.00 0.29 0.32 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 K intron_retention Acf1,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27620212_27620703 chr3R_27620211_27620212;chr3R_27620703_27620704 chr3R_27620112_27620211;chr3R_27620704_27621934 0.00 0.00 0.00 11.76 5.88 0.00 1.92 0.00 0.00 0.00 4.00 0.96 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 2.94 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 5.71 K intron_retention CG10425 chr3R - chr3R_21087836_21087905 chr3R_21087835_21087836;chr3R_21087905_21087906 chr3R_21087267_21087835;chr3R_21087906_21088225 0.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 1.37 0.00 K intron_retention quemao,I_chr3L_7341776_7344368 chr3L + chr3L_7344998_7345070 chr3L_7344997_7344998;chr3L_7345070_7345071 chr3L_7344895_7344997;chr3L_7345071_7345198 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.16 5.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG13085,REI_chr2L_19426699_19427208,I_chr2L_19426780_19427208,CG16771,I_chr2L_19426895_19427208,I_chr2L_19427121_19427208 chr2L + chr2L_19427121_19427208 chr2L_19427120_19427121;chr2L_19427208_19427209 chr2L_19427021_19427120;chr2L_19427209_19427308 41.67 40.00 NA 57.69 45.45 NA 45.00 66.67 40.00 NA NA 42.86 45.45 NA NA 26.09 18.18 30.77 NA 33.33 36.36 NA 50.00 42.86 NA NA 63.64 NA NA NA 50.00 NA NA 35.29 NA 30.77 NA NA NA NA NA 35.71 NA NA NA NA NA NA 39.13 NA 50.00 41.67 NA NA 30.77 NA 46.15 NA K cassette Eb1,RI_chr2R_2640290_2642206,I_chr2R_2640494_2642206,I_chr2R_2641187_2642206,RI_chr2R_2641944_2642025,I_chr2R_2641954_2642206,I_chr2R_2642491_2642549 chr2R + chr2R_2640494_2642206;chr2R_2641187_2642206 chr2R_2641187_2641684,chr2R_2640494_2641684;chr2R_2641944_2642206 chr2R_2641685_2641943 chr2R_2640394_2640493;chr2R_2642207_2642306 99.29 99.71 98.12 95.99 98.03 98.02 98.13 98.41 99.64 99.53 100.00 99.55 98.39 99.39 99.60 98.90 97.91 99.52 99.47 98.98 99.51 94.24 99.23 99.53 99.67 99.44 98.80 97.40 99.66 99.28 98.37 99.56 98.09 98.72 99.27 97.83 99.39 99.53 99.30 98.51 99.60 99.02 99.41 97.85 99.52 100.00 100.00 99.16 99.28 99.29 99.23 99.12 100.00 99.69 99.18 99.70 99.73 99.71 K alternative_donor spi,I_chr2L_19569183_19577185,I_chr2L_19569227_19572142,I_chr2L_19569227_19577173 chr2L - chr2L_19571768_19577185 chr2L_19571768_19577173 chr2L_19571572_19571767;chr2L_19577186_19577273 1.74 1.92 1.49 0.68 1.92 0.98 2.00 2.63 1.79 0.00 2.22 2.68 1.17 1.64 1.80 2.22 0.88 2.15 1.80 1.93 3.20 0.00 2.04 2.69 0.79 0.71 3.03 3.12 4.17 2.19 2.30 1.14 2.04 2.67 0.93 1.22 0.89 1.35 1.66 1.09 1.59 0.99 1.74 1.43 1.54 2.30 1.59 1.89 0.89 2.23 1.25 1.67 0.83 0.99 0.65 2.49 2.89 2.44 K jcn_only_AD I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,I_chr3R_17183927_17184513,I_chr3R_17183927_17185306,RI_chr3R_17184319_17184513,I_chr3R_17184319_17185084,I_chr3R_17184319_17185284,noncoding_18168,RI_chr3R_17184792_17185306,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,RI_chr3R_17189607_17189988,I_chr3R_17190098_17190207,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17183927_17184513;chr3R_17183927_17184082;chr3R_17183927_17185306 chr3R_17183927_17200781 chr3R_17183827_17183926 47.37 58.97 52.00 50.00 60.98 36.73 48.33 46.03 48.33 39.47 55.00 48.96 50.00 57.89 55.56 46.67 34.38 62.79 46.81 60.32 40.43 44.26 42.22 47.89 30.99 37.25 41.27 38.10 41.54 40.54 12.70 65.67 67.59 50.68 46.94 44.78 52.53 43.48 50.94 54.31 46.88 52.89 42.31 38.46 75.61 60.58 47.25 67.92 48.89 39.13 45.71 47.37 36.99 44.57 48.15 47.87 27.08 64.86 K intron_retention sec10,I_chr3R_19964058_19965500 chr3R + chr3R_19962539_19962607 chr3R_19962538_19962539;chr3R_19962607_19962608 chr3R_19962349_19962538;chr3R_19962608_19962925 0.00 NA NA 17.65 NA NA 0.00 0.00 0.00 NA NA NA NA NA NA NA 7.14 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 4.00 NA 0.00 NA NA NA 6.25 12.50 NA NA NA NA NA NA NA 0.00 0.00 K alternative_donor Rox8,I_chr3R_19872211_19872659,I_chr3R_19872214_19872630,I_chr3R_19872214_19872636,I_chr3R_19872214_19872838,I_chr3R_19876189_19876240 chr3R - chr3R_19872214_19873136;chr3R_19872214_19873220 chr3R_19872214_19873214 chr3R_19872114_19872213;chr3R_19873221_19873284 20.00 NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA 20.00 NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 25.00 NA NA NA NA NA NA NA NA NA N alternative_acceptor CkIIbeta,I_chrX_11686847_11687475,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11687552_11687884 chrX_11687552_11687830 chrX_11687476_11687551;chrX_11687885_11687933 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 73.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Su(var)2-HP2 chr2R - chr2R_10495339_10495402 chr2R_10495338_10495339;chr2R_10495402_10495403 chr2R_10494778_10495338;chr2R_10495403_10498989 0.00 0.00 0.00 0.00 0.00 0.00 3.03 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG17715,RI_chr2L_22742106_22742215,I_chr2L_22742106_22746918 chr2L + chr2L_22742106_22746918 chr2L_22742106_22742215;chr2L_22742365_22746918 chr2L_22742216_22742364 chr2L_22742093_22742105;chr2L_22746919_22746924 100.00 97.73 100.00 98.55 100.00 100.00 100.00 100.00 100.00 96.67 100.00 98.65 100.00 97.22 100.00 100.00 100.00 100.00 100.00 98.78 100.00 96.67 100.00 98.21 96.88 89.47 100.00 100.00 95.83 97.14 98.55 97.06 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 86.67 98.68 96.97 96.08 100.00 98.21 100.00 98.36 100.00 98.61 100.00 98.08 96.55 97.30 100.00 97.87 100.00 100.00 K intron_retention crol,snoRNA:Me18S-A934,I_chr2L_11799403_11802904 chr2L - chr2L_11797742_11797828 chr2L_11797741_11797742;chr2L_11797828_11797829 chr2L_11797682_11797741;chr2L_11797829_11798041 2.00 1.83 2.63 2.99 3.70 2.73 1.63 2.72 1.93 0.73 5.13 1.79 0.00 0.00 2.46 3.26 2.78 2.38 2.35 1.63 1.35 16.22 1.97 2.42 4.03 4.60 3.83 7.00 2.33 0.77 4.17 1.08 1.18 1.71 1.29 4.02 1.77 2.26 3.73 1.71 0.00 3.12 1.27 0.96 1.67 0.93 2.33 0.96 2.00 1.44 3.95 2.17 0.74 2.15 0.00 2.11 0.00 0.00 N intron_retention dpr3 chr2L - chr2L_2059984_2061974 chr2L_2059983_2059984;chr2L_2061974_2061975 chr2L_2058819_2059983;chr2L_2061975_2062299 62.50 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 59.09 NA NA NA 52.94 62.50 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG2264 chr2R + chr2R_5948870_5949604 chr2R_5948870_5949122;chr2R_5949402_5949604 chr2R_5949123_5949401 chr2R_5948849_5948869;chr2R_5949605_5949696 100.00 NA NA NA NA NA NA 100.00 80.00 100.00 NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA 75.00 NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 NA 83.33 NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 K intron_retention myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_715964_716322 chr4_715963_715964;chr4_716322_716323 chr4_715936_715963;chr4_716323_716675 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.33 NA 90.00 94.74 100.00 94.74 100.00 96.15 100.00 100.00 100.00 100.00 91.67 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 97.06 92.31 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 86.67 NA 100.00 NA 88.89 95.83 100.00 100.00 94.12 NA NA 95.24 100.00 NA NA K alternative_acceptor fra chr2R + chr2R_8445281_8445949;chr2R_8445281_8446375 chr2R_8445281_8445922 chr2R_8445263_8445280;chr2R_8446376_8446583 60.55 20.00 63.64 66.67 75.00 58.33 60.00 50.00 66.67 70.00 66.67 66.67 85.71 85.71 88.89 80.00 50.00 75.00 88.89 61.11 60.00 66.67 50.00 61.54 33.33 80.00 33.33 75.00 50.00 54.55 75.00 40.00 50.00 85.71 60.00 50.00 60.00 62.50 54.55 47.06 20.00 76.47 71.43 45.45 20.00 33.33 75.00 80.95 76.47 40.00 35.29 60.00 75.00 33.33 70.00 28.57 NA 27.27 K intron_retention I_chr2R_13460029_13460240,Dcr-2,I_chr2R_13466001_13466061,I_chr2R_13466001_13466072 chr2R - chr2R_13466001_13466058 chr2R_13466000_13466001;chr2R_13466058_13466059 chr2R_13465901_13466000;chr2R_13466059_13466233 2.37 5.13 6.00 14.58 2.94 5.26 4.11 2.44 3.54 0.00 0.00 3.03 0.00 0.00 4.17 6.56 0.00 0.00 2.70 2.60 0.00 0.00 3.77 4.35 3.45 0.00 7.46 9.76 15.79 0.00 13.85 NA 7.32 2.74 0.00 17.24 6.82 0.00 0.00 3.03 NA 1.08 0.00 3.92 NA 0.00 0.00 0.00 2.30 0.00 5.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1902,CG30000,I_chr2R_5495525_5495581 chr2R + chr2R_5491271_5491373 chr2R_5491270_5491271;chr2R_5491373_5491374 chr2R_5491228_5491270;chr2R_5491374_5491685 97.30 94.12 97.37 100.00 92.59 90.91 97.10 98.04 97.50 88.89 95.83 94.74 95.00 96.77 92.86 100.00 96.55 97.30 96.67 95.40 100.00 98.61 94.64 98.21 97.56 97.44 98.00 95.45 97.96 98.04 99.02 100.00 96.61 97.87 96.77 100.00 100.00 97.73 91.67 98.00 96.55 94.03 96.00 93.10 96.67 95.16 97.44 100.00 93.44 100.00 98.18 100.00 96.43 100.00 97.73 100.00 94.59 96.30 K alternative_donor His4r chr3R + chr3R_10451538_10451747;chr3R_10451564_10451747 chr3R_10451640_10451747 chr3R_10451748_10451951;chr3R_10451469_10451537 2.33 1.76 1.81 1.68 1.73 1.10 2.99 2.12 2.33 3.23 1.40 1.66 1.81 2.91 1.48 3.65 2.24 1.41 1.23 1.74 1.79 4.26 4.92 2.88 4.55 1.36 6.76 2.00 3.36 4.11 2.08 2.07 0.93 1.67 8.33 3.92 2.46 1.10 2.38 2.50 4.00 1.47 1.61 5.30 1.37 5.20 3.57 3.33 1.51 4.88 6.25 2.44 3.09 5.71 1.71 2.91 4.29 1.87 K cassette CG6767,CREI_chr3L_9679564_9687332,I_chr3L_9680354_9682364,I_chr3L_9682549_9689638,I_chr3L_9682607_9687332,RE_chr3L_9679576_9682364,RI_chr3L_9679579_9682364 chr3L - chr3L_9679564_9682364 chr3L_9679564_9681630;chr3L_9681700_9682364 chr3L_9681631_9681699 chr3L_9679479_9679563;chr3L_9682365_9682463 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Tequila chr3L + chr3L_9084921_9084981 chr3L_9084920_9084921;chr3L_9084981_9084982 chr3L_9084837_9084920;chr3L_9084982_9085228 17.71 4.17 16.28 16.39 15.38 21.05 21.62 11.39 13.98 24.00 26.67 15.62 17.78 13.79 17.50 11.76 14.29 18.92 15.38 9.84 5.26 16.00 19.23 23.88 27.27 9.09 14.29 42.11 22.58 22.22 27.27 18.60 9.76 16.07 23.81 12.20 12.20 NA 20.29 21.54 11.11 13.48 15.62 17.65 17.39 16.13 20.93 16.67 18.99 22.81 19.64 33.33 26.15 28.00 21.05 19.51 38.78 28.95 K intron_retention CG7048,I_chr3R_18313003_18313231,R_chr3R_18313119_18313234,I_chr3R_18313402_18313502 chr3R + chr3R_18313003_18313231 chr3R_18313002_18313003;chr3R_18313231_18313232 chr3R_18312937_18313002;chr3R_18313232_18313331 98.04 97.73 97.50 96.97 100.00 100.00 97.06 98.57 96.92 95.83 97.92 100.00 100.00 96.67 98.33 98.36 97.73 100.00 97.44 99.19 97.83 67.39 96.43 100.00 96.55 100.00 100.00 97.06 97.87 97.78 95.56 96.55 98.48 98.55 96.67 100.00 98.15 98.04 98.48 93.90 100.00 97.89 100.00 100.00 97.37 100.00 97.62 95.83 98.65 98.21 97.37 97.56 100.00 100.00 98.18 100.00 97.92 99.07 K multi_cassette mud chrX + chrX_14148322_14150517 chrX_14148322_14149491;chrX_14149968_14150033;chrX_14150332_14150517 chrX_14149492_14149967;chrX_14150034_14150331 chrX_14147213_14148321;chrX_14150518_14150790 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 86.21 100.00 100.00 100.00 100.00 100.00 100.00 97.44 95.45 100.00 95.83 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 K intron_retention vari,I_chr2L_20792267_20794059 chr2L - chr2L_20792267_20794118 chr2L_20792266_20792267;chr2L_20794118_20794119 chr2L_20792167_20792266;chr2L_20794119_20794159 34.62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 34.62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG6608,I_chr3R_6706829_6707624 chr3R - chr3R_6706829_6707624 chr3R_6706829_6707284 chr3R_6706729_6706828;chr3R_6707625_6707724 98.89 97.62 100.00 100.00 100.00 96.30 98.95 100.00 98.81 100.00 94.44 95.89 96.88 100.00 97.50 100.00 100.00 100.00 97.22 98.95 100.00 99.21 98.97 98.61 100.00 97.62 98.61 98.80 99.03 100.00 100.00 98.25 99.21 100.00 97.87 100.00 98.65 98.18 97.06 100.00 100.00 98.63 100.00 98.89 100.00 98.65 97.83 100.00 98.31 98.25 98.44 98.15 100.00 97.56 97.83 97.92 97.22 100.00 K intron_retention lqf,I_chr3L_7522287_7522807 chr3L + chr3L_7528745_7530075 chr3L_7528744_7528745;chr3L_7530075_7530076 chr3L_7528643_7528744;chr3L_7530076_7530479 0.00 0.00 3.23 2.70 0.00 3.64 0.00 1.19 5.00 0.00 2.70 2.94 4.44 2.00 1.67 0.00 4.44 4.08 0.00 6.36 0.00 0.00 3.12 2.50 7.14 0.00 0.00 0.00 1.45 0.00 3.70 0.00 0.00 4.88 0.00 3.85 0.00 0.00 0.00 0.00 0.00 3.17 0.00 3.19 0.00 1.52 0.00 1.69 4.42 0.00 3.53 0.00 0.00 0.00 0.00 0.00 2.53 1.75 K jcn_only_AD CG32000,RI_chr4_153025_153811,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_152914_153811;chr4_152998_153811 chr4_153025_153811 chr4_153812_153855;chr4_152891_152913 2.17 NA 4.76 0.00 NA NA 1.89 6.12 3.39 NA NA 2.00 NA 6.90 NA 0.00 NA NA 0.00 2.17 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 5.66 NA NA NA NA NA 9.09 NA 3.45 NA NA NA NA NA 0.00 4.23 NA NA NA NA NA NA NA NA 0.00 N jcn_only_AD Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11837971_11838112;chr2R_11837971_11838662 chr2R_11837971_11838672 chr2R_11837919_11837970;chr2R_11838673_11838762 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Eph,I_chr4_631523_634240,I_chr4_632065_634240,I_chr4_632433_632707,I_chr4_632433_632988,I_chr4_639690_640473,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_632282_632352 chr4_632281_632282;chr4_632352_632353 chr4_632139_632281;chr4_632353_632432 0.00 0.00 0.00 8.00 NA 0.00 0.00 0.00 1.75 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA K alternative_acceptor Pgi,I_chr2R_4801076_4801329 chr2R - chr2R_4801072_4801214;chr2R_4801076_4801214 chr2R_4801134_4801214 chr2R_4801215_4801631;chr2R_4800976_4801071 50.00 54.29 52.17 NA 42.50 55.56 NA 46.88 49.57 50.00 NA NA NA 50.00 55.56 53.85 NA 49.06 NA 46.59 NA 43.94 50.00 49.48 49.28 NA 55.17 46.97 75.86 NA NA 55.56 45.90 49.18 49.21 41.10 49.48 55.07 NA 44.90 46.67 45.13 NA 48.48 45.95 50.79 65.00 48.48 55.22 50.56 54.88 55.77 55.00 54.39 NA 55.56 NA NA K alternative_donor CG16953,I_chr3R_16411011_16411267 chr3R - chr3R_16411011_16411267 chr3R_16411011_16411124 chr3R_16410911_16411010;chr3R_16411268_16411367 99.33 100.00 100.00 99.21 100.00 100.00 99.14 99.17 99.33 100.00 95.52 99.28 98.68 98.33 98.98 96.55 100.00 100.00 98.67 99.48 100.00 98.70 98.96 98.95 98.28 100.00 98.92 98.75 99.39 100.00 96.77 100.00 99.51 99.15 98.68 99.15 100.00 98.21 100.00 99.53 100.00 99.40 94.44 100.00 100.00 99.45 100.00 100.00 99.13 100.00 98.94 97.87 98.21 100.00 97.75 100.00 98.00 99.48 K alternative_donor Sema-5c chr3L - chr3L_12074059_12074660 chr3L_12074059_12074446 chr3L_12073895_12074058;chr3L_12074661_12074895 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA NA NA 100.00 100.00 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K cassette Rm62 chr3R - chr3R_1830849_1833758 chr3R_1830849_1831671;chr3R_1831837_1833758 chr3R_1831672_1831836 chr3R_1829739_1830848;chr3R_1833759_1834028 0.42 0.41 0.79 0.17 0.42 0.29 0.50 0.18 0.50 0.39 0.00 0.36 0.42 0.57 0.22 0.22 0.74 0.56 0.52 0.35 0.33 12.00 0.52 0.61 0.77 0.48 0.37 0.51 0.38 0.43 0.00 0.26 0.25 0.34 0.81 0.84 0.73 0.15 0.40 0.35 0.24 0.55 0.30 0.83 0.00 0.36 0.81 0.41 0.49 0.45 0.42 0.46 0.56 0.78 0.66 0.66 0.00 0.18 K intron_retention MESR6,RI_chr3L_19086421_19086498 chr3L + chr3L_19086421_19086762 chr3L_19086420_19086421;chr3L_19086762_19086763 chr3L_19086321_19086420;chr3L_19086763_19087328 0.00 8.33 0.00 3.28 0.00 0.00 5.26 2.27 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 8.82 0.00 0.00 0.00 0.00 5.88 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 NA 0.00 0.00 NA 0.00 13.64 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention l(1)G0222,I_chrX_17473084_17473137 chrX - chrX_17466877_17466941 chrX_17466876_17466877;chrX_17466941_17466942 chrX_17466743_17466876;chrX_17466942_17467508 0.00 0.00 0.00 1.27 0.00 1.61 2.86 1.08 2.06 0.00 0.00 1.83 0.00 0.00 1.67 1.41 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.93 0.00 0.00 4.85 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 1.72 0.76 0.00 0.88 0.00 0.00 0.00 1.80 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 2.41 0.00 0.00 0.00 K intron_retention Atet,chr2L_4334987_4335394.0,chr2L_4335788_4336447.0 chr2L + chr2L_4334105_4336500 chr2L_4334104_4334105;chr2L_4336500_4336501 chr2L_4333926_4334104;chr2L_4336501_4336957 98.37 100.00 96.15 98.00 100.00 95.00 96.97 100.00 97.96 100.00 100.00 100.00 96.67 96.67 100.00 100.00 94.44 95.45 100.00 100.00 94.12 97.06 95.24 100.00 94.12 96.43 100.00 95.00 98.25 97.14 96.00 96.15 88.89 100.00 100.00 100.00 100.00 91.67 96.15 98.25 97.14 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 96.15 100.00 100.00 NA 100.00 100.00 96.55 98.48 K jcn_only_AD kay,E_chr3R_25616137_25617114 chr3R + chr3R_25616577_25617114;chr3R_25615618_25617114 chr3R_25616533_25617114 chr3R_25617115_25617214;chr3R_25615520_25615617 0.00 4.17 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 1.14 0.00 4.08 2.04 1.67 2.13 1.22 2.82 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 2.94 0.00 0.00 2.22 0.00 0.00 0.00 K intron_retention CG10417,E_chr2R_1248333_1249215,RI_chr2R_1248452_1248523 chr2R - chr2R_1248471_1248523 chr2R_1248470_1248471;chr2R_1248523_1248524 chr2R_1247865_1248470;chr2R_1248524_1248623 0.00 0.00 0.00 5.48 0.00 0.00 0.00 1.53 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 2.38 0.00 2.70 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Cyp28a5 chr2L + chr2L_13977548_13977695 chr2L_13977548_13977691 chr2L_13977303_13977547;chr2L_13977696_13977938 94.29 92.86 100.00 88.24 92.31 91.67 94.29 89.47 97.73 NA 93.33 96.77 100.00 100.00 93.75 95.24 93.75 100.00 94.44 93.75 92.86 100.00 100.00 100.00 100.00 94.12 100.00 100.00 95.00 95.24 87.88 90.00 95.00 88.89 92.86 93.75 93.75 100.00 93.75 100.00 92.59 96.43 100.00 96.97 80.00 89.29 88.89 90.32 100.00 100.00 100.00 100.00 NA NA 93.75 88.89 NA 94.12 K cassette CG6454,I_chr3R_20175958_20178905 chr3R + chr3R_20175958_20178905 chr3R_20175958_20176448;chr3R_20178074_20178905 chr3R_20176449_20178073 chr3R_20175858_20175957;chr3R_20178906_20179005 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 96.00 72.73 100.00 96.67 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 92.86 90.00 94.74 88.24 84.62 100.00 84.62 88.89 100.00 100.00 84.62 100.00 95.83 100.00 100.00 95.65 88.89 96.00 100.00 100.00 100.00 92.31 100.00 91.67 95.65 90.91 95.00 90.91 100.00 100.00 100.00 100.00 90.91 100.00 K intron_retention Adam,I_chr2R_5856741_5856974,I_chr2R_5856741_5857245,I_chr2R_5857058_5857250,I_chr2R_5857078_5857245 chr2R + chr2R_5856741_5856965 chr2R_5856740_5856741;chr2R_5856965_5856966 chr2R_5856641_5856740;chr2R_5856966_5857057 4.85 4.85 3.90 6.10 2.29 4.08 9.47 3.27 4.52 7.02 6.21 4.49 2.34 5.56 4.43 3.56 7.96 8.38 6.08 3.82 5.00 9.60 4.79 4.09 5.73 7.14 9.01 6.42 9.14 4.46 9.54 4.19 6.75 6.41 4.98 4.38 5.41 4.85 5.28 3.39 8.59 4.36 5.88 6.64 4.70 3.85 3.46 4.15 3.07 5.22 6.21 5.06 2.40 2.72 2.55 3.81 3.43 5.07 K intron_retention CG2076 chrX + chrX_10985661_10985757 chrX_10985660_10985661;chrX_10985757_10985758 chrX_10985324_10985660;chrX_10985758_10985890 0.00 0.00 0.00 1.83 0.00 0.00 1.61 0.00 0.68 0.00 0.00 1.86 1.54 0.00 0.00 0.00 0.00 2.35 0.00 0.45 0.00 3.18 0.00 0.80 0.66 0.00 2.25 2.79 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.41 1.49 2.67 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 K intron_retention CG1746,I_chr3R_27043646_27044664,I_chr3R_27043667_27043890,I_chr3R_27043667_27044393,RI_chr3R_27044771_27045268 chr3R - chr3R_27043646_27044664 chr3R_27043645_27043646;chr3R_27044664_27044665 chr3R_27043567_27043645;chr3R_27044665_27044764 99.53 100.00 100.00 98.10 98.99 100.00 99.29 99.15 99.64 100.00 99.04 99.44 100.00 99.33 99.53 100.00 100.00 100.00 99.37 99.70 99.21 100.00 100.00 100.00 99.34 100.00 99.61 76.09 99.16 99.50 99.43 98.59 99.48 100.00 99.47 96.35 100.00 99.62 99.70 99.34 95.74 99.38 99.28 100.00 100.00 100.00 99.63 99.34 99.66 99.40 99.64 99.28 98.94 100.00 98.97 99.67 99.72 99.49 K intron_retention CycG,I_chr3R_27427946_27436602,I_chr3R_27427953_27429034,I_chr3R_27427953_27431334,RE_chr3R_27427953_27436598 chr3R - chr3R_27427953_27436602 chr3R_27427952_27427953;chr3R_27436602_27436603 chr3R_27427853_27427952;chr3R_27436603_27436698 15.79 15.47 13.77 18.37 14.04 13.77 13.47 20.39 14.84 10.15 10.83 20.57 22.92 19.75 18.03 20.88 18.07 14.53 18.22 14.80 10.74 17.83 15.48 15.79 32.04 12.27 26.55 9.70 10.42 13.92 16.04 8.42 11.06 18.90 21.31 48.31 8.15 20.47 11.98 22.82 11.94 15.83 14.05 10.32 4.03 18.10 15.91 12.21 17.59 13.33 31.03 16.77 20.19 27.50 17.80 14.66 20.54 11.44 K alternative_acceptor CG1418,RI_chr2R_5852050_5852138 chr2R - chr2R_5852050_5852138 chr2R_5852087_5852138 chr2R_5852139_5852207;chr2R_5852030_5852049 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 98.59 100.00 100.00 97.62 100.00 96.67 100.00 100.00 100.00 100.00 97.37 96.88 100.00 100.00 100.00 97.62 100.00 100.00 96.67 100.00 99.06 98.77 100.00 100.00 100.00 100.00 99.16 100.00 100.00 98.04 100.00 98.04 100.00 100.00 97.73 100.00 100.00 100.00 99.33 K cassette pod1 chrX + chrX_6703171_6703517 chrX_6703171_6703406;chrX_6703440_6703517 chrX_6703407_6703439 chrX_6703097_6703170;chrX_6703518_6703690 33.33 35.71 20.34 35.00 16.33 17.02 36.49 31.18 34.85 11.54 31.58 36.36 37.50 42.86 26.53 15.71 100.00 44.19 31.71 39.53 25.86 68.75 16.92 33.33 37.04 28.57 19.35 44.00 48.78 19.57 30.00 33.33 40.00 37.14 41.18 33.33 31.75 32.61 36.36 36.21 34.62 32.73 34.88 42.31 38.89 35.14 28.57 34.62 25.78 14.81 25.76 21.88 20.00 26.32 34.62 23.53 44.00 18.92 K jcn_only_AD scrib,RI_chr3R_22402364_22402676,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22401171_22404442 chr3R_22402364_22404442 chr3R_22404443_22404553 19.23 27.27 15.22 16.98 10.71 12.20 7.69 15.38 11.76 17.02 6.45 33.33 0.00 21.05 13.16 21.21 2.70 7.32 30.56 14.12 19.23 3.61 24.24 23.96 15.79 28.57 29.63 23.40 17.24 14.06 23.53 25.71 32.50 22.06 29.69 41.98 20.74 25.29 23.23 19.05 27.59 16.46 17.14 21.18 16.67 23.21 21.82 23.21 10.26 35.56 21.50 9.26 17.50 28.21 10.26 17.07 26.79 12.50 K jcn_only_AA CG10737 chr2R + chr2R_15064029_15064095 chr2R_15064029_15064092 chr2R_15063921_15064028;chr2R_15064096_15064248 99.59 99.32 100.00 99.70 99.57 100.00 99.64 99.50 99.43 98.91 100.00 99.54 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.81 100.00 99.59 99.65 99.62 99.53 100.00 99.56 100.00 99.12 99.42 99.66 100.00 99.28 100.00 98.80 99.39 99.16 99.60 99.75 99.13 100.00 99.04 100.00 99.57 99.04 99.24 100.00 97.20 99.52 100.00 99.38 99.37 99.11 99.63 99.31 98.82 99.54 99.37 K jcn_only_AD woc,I_chr3R_23089174_23089688,I_chr3R_23089174_23089695,I_chr3R_23096096_23096561 chr3R - chr3R_23089174_23089688;chr3R_23089174_23089498 chr3R_23089174_23089695 chr3R_23089074_23089173;chr3R_23089696_23089772 4.55 9.52 9.09 9.76 8.70 7.41 10.53 3.92 8.82 NA 4.76 4.88 3.45 0.00 3.23 3.45 3.33 14.81 10.00 14.00 NA 28.57 8.57 4.35 0.00 9.09 0.00 0.00 NA NA 2.56 NA 0.00 5.88 NA 0.00 3.23 11.54 NA 2.86 NA 5.36 0.00 4.17 NA 4.55 NA 13.79 2.00 NA 0.00 0.00 NA NA 13.16 NA NA NA N alternative_acceptor CG13602,I_chr3R_19753657_19753715 chr3R - chr3R_19754473_19754558 chr3R_19754502_19754558 chr3R_19754559_19754569;chr3R_19754464_19754472 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 78.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention DNApol-epsilon,sec13,I_chr3R_19184824_19184875 chr3R + chr3R_19180443_19180506 chr3R_19180442_19180443;chr3R_19180506_19180507 chr3R_19174234_19180442;chr3R_19180507_19180890 2.94 4.88 3.23 34.48 0.00 3.57 3.26 9.43 5.88 0.00 4.55 5.21 0.00 5.17 10.34 10.00 4.26 4.00 4.41 4.43 1.23 10.64 2.35 1.41 2.33 10.34 8.70 5.41 0.00 3.08 2.13 0.00 0.00 7.14 0.00 9.80 4.39 1.45 0.87 2.94 0.00 2.99 4.35 5.26 0.91 1.59 0.00 0.00 9.35 0.00 0.00 2.13 0.00 0.00 2.78 0.00 0.00 0.00 K intron_retention CaMKI,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,RI_chr4_467374_467424,RI_chr4_467482_467543,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_467374_467446 chr4_467373_467374;chr4_467446_467447 chr4_467365_467373;chr4_467447_467481 66.67 NA NA 90.91 NA NA 81.82 54.55 56.25 NA NA 83.33 58.33 NA NA 53.85 NA NA 90.00 75.00 NA NA NA NA NA NA NA NA NA NA 61.54 NA NA 66.67 NA NA NA NA NA NA NA 63.64 NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA K alternative_donor CG4699 chr3R + chr3R_11619772_11620550;chr3R_11619570_11620550;chr3R_11619776_11620550;chr3R_11619676_11620550 chr3R_11619752_11620550 chr3R_11620551_11621301;chr3R_11619539_11619569 0.00 0.00 0.00 2.38 0.00 5.56 3.12 2.38 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 5.56 3.03 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 3.85 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 K alternative_donor pnt,I_chr3R_19139278_19163617,noncoding_18559,I_chr3R_19181524_19181702 chr3R - chr3R_19166250_19171119 chr3R_19166250_19171110 chr3R_19166218_19166249;chr3R_19171120_19171533 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Dscam,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3251271_3255892;chr2R_3254472_3255892;chr2R_3253610_3255892;chr2R_3250700_3255892;chr2R_3252685_3255892;chr2R_3251854_3255892;chr2R_3252399_3255892;chr2R_3250996_3255892;chr2R_3252123_3255892;chr2R_3252988_3255892 chr2R_3254133_3255892 chr2R_3255893_3255920 6.98 6.06 2.56 4.76 0.00 7.14 7.41 9.76 1.43 NA NA 2.60 NA 0.00 6.98 3.33 9.52 NA 31.82 8.89 3.12 18.67 5.77 12.82 10.53 0.00 10.20 4.17 6.98 6.98 5.56 NA 10.91 8.70 0.00 11.54 1.52 3.23 4.62 11.94 NA 3.92 10.00 7.69 NA 4.35 3.70 8.82 9.26 0.00 11.36 8.70 NA NA 12.00 13.04 4.35 NA K alternative_donor CG12734,I_chr3L_3183812_3183932,I_chr3L_3184645_3185360 chr3L + chr3L_3183800_3183932 chr3L_3183812_3183932 chr3L_3183933_3183997;chr3L_3183712_3183799 2.00 2.38 0.00 0.00 0.00 0.00 2.78 3.85 2.90 0.00 0.00 2.27 0.00 0.00 3.33 0.00 0.00 0.00 0.00 1.89 0.00 2.04 0.00 3.28 3.45 0.00 4.17 4.26 0.00 2.86 0.00 3.45 2.86 2.78 0.00 2.94 2.27 2.27 1.11 2.17 4.17 1.72 0.00 0.00 3.45 2.70 2.13 3.45 3.77 2.00 0.00 4.55 3.33 0.00 0.00 2.00 0.00 0.00 K intron_retention Cct1,Cct2 chr3L + chr3L_1554011_1554077 chr3L_1554010_1554011;chr3L_1554077_1554078 chr3L_1553493_1554010;chr3L_1554078_1554401 81.82 NA NA NA NA NA NA NA 70.00 NA NA 72.73 NA NA NA 82.61 NA NA NA NA NA NA 75.00 83.33 NA NA 88.89 NA NA NA 81.82 NA NA NA NA NA 80.00 NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG14741 chr3R - chr3R_7896131_7896221 chr3R_7896130_7896131;chr3R_7896221_7896222 chr3R_7895882_7896130;chr3R_7896222_7896551 0.00 0.00 0.00 0.64 0.00 0.00 0.38 0.00 0.36 0.00 0.00 0.21 0.00 0.36 0.00 0.52 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_155392_155450 chr4_155391_155392;chr4_155450_155451 chr4_155323_155391;chr4_155451_155590 100.00 92.31 100.00 100.00 100.00 100.00 92.31 100.00 100.00 NA 92.31 100.00 93.33 95.65 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA 100.00 NA 100.00 96.77 NA NA NA NA NA 100.00 NA 100.00 100.00 94.12 NA NA NA 92.86 96.97 NA 100.00 NA NA NA 100.00 NA NA 100.00 K multi_cassette ens,I_chr3L_4130719_4131120 chr3L - chr3L_4132213_4134453 chr3L_4132213_4133548;chr3L_4133657_4133768;chr3L_4133823_4134453 chr3L_4133549_4133656;chr3L_4133769_4133822 chr3L_4131956_4132212;chr3L_4134454_4134502 85.71 100.00 71.43 82.35 85.71 55.56 55.56 70.59 80.00 90.00 56.25 86.67 66.67 90.00 85.71 78.57 85.71 85.71 76.92 92.59 86.36 78.26 97.87 89.47 69.23 90.00 93.75 93.10 72.73 97.37 93.33 85.71 81.82 82.61 88.89 86.21 90.24 87.10 94.12 74.29 81.82 82.35 90.00 80.00 80.00 90.00 90.00 92.86 84.62 100.00 90.70 75.00 100.00 92.31 78.95 100.00 92.31 81.82 K intron_retention RhoGAP18B chrX - chrX_19038530_19038596 chrX_19038529_19038530;chrX_19038596_19038597 chrX_19038485_19038529;chrX_19038597_19038609 0.00 NA NA 6.67 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA NA NA NA NA K cassette CG31782,VhaSFD,RI_chr2L_16731891_16731942 chr2L - chr2L_16724994_16727009 chr2L_16724994_16725891;chr2L_16726114_16727009 chr2L_16725892_16726113 chr2L_16724859_16724993;chr2L_16727010_16727488 2.24 0.95 2.24 1.16 2.17 1.00 2.37 2.06 2.28 1.92 4.95 2.90 0.93 1.09 1.55 3.31 4.21 1.03 2.20 2.63 2.04 4.85 2.67 2.08 2.56 2.94 1.94 2.19 2.97 2.27 2.94 3.45 2.00 1.73 3.45 3.61 2.07 1.69 2.67 2.55 4.08 1.92 2.41 2.86 1.06 4.35 3.49 1.85 1.89 6.74 2.13 1.39 2.44 1.12 1.57 2.04 3.16 2.99 K jcn_only_AA Rpb4 chr3R - chr3R_14080914_14081038;chr3R_14080959_14081038 chr3R_14080814_14081038 chr3R_14081039_14081173;chr3R_14080097_14080813 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention eIF4G,I_chr4_948813_950447 chr4 - chr4_936180_936242 chr4_936179_936180;chr4_936242_936243 chr4_935950_936179;chr4_936243_936344 0.00 0.00 0.00 0.00 0.00 0.00 0.93 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 1.54 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7203,Rack1,RI_chr2L_7826337_7826533 chr2L - chr2L_7826337_7826533 chr2L_7826336_7826337;chr2L_7826533_7826534 chr2L_7826237_7826336;chr2L_7826534_7826633 16.36 16.36 28.57 25.93 31.82 33.33 21.82 33.33 20.83 9.09 25.00 20.00 29.63 24.00 34.62 40.00 45.45 29.41 26.92 23.64 40.00 6.28 8.64 11.11 13.21 21.43 10.31 10.34 1.54 13.46 9.64 10.53 14.63 53.33 9.09 10.53 9.91 13.56 10.75 11.11 11.63 24.14 41.67 11.11 15.69 17.39 12.20 20.59 28.00 13.58 9.00 14.00 20.31 11.27 33.33 9.68 12.28 37.14 K alternative_donor CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1666133_1670281 chr2R_1666133_1670219 chr2R_1666119_1666132;chr2R_1670282_1670304 92.31 94.44 95.65 89.09 92.31 93.75 90.62 92.73 87.76 100.00 88.24 94.59 85.00 89.47 85.19 90.32 84.00 95.65 96.15 95.00 96.30 96.00 95.24 100.00 100.00 94.44 95.00 NA 90.48 83.87 96.15 90.00 97.83 93.88 90.48 100.00 88.89 87.50 95.65 92.86 100.00 100.00 100.00 94.12 81.25 90.00 83.33 83.72 92.06 85.71 92.31 83.33 92.31 87.50 90.91 92.31 86.67 85.42 K intron_retention RanBPM chr2R + chr2R_6320709_6320779 chr2R_6320708_6320709;chr2R_6320779_6320780 chr2R_6320544_6320708;chr2R_6320780_6320970 2.44 0.81 3.61 1.48 0.00 0.00 1.72 2.56 2.05 2.70 0.00 2.26 1.23 0.00 2.53 0.00 1.82 0.00 2.90 1.18 0.00 14.07 5.16 3.82 7.48 7.94 5.71 1.94 10.53 4.63 5.88 0.00 4.95 0.00 5.06 9.52 3.76 1.64 3.23 4.49 7.69 2.11 0.00 1.46 3.30 3.12 1.83 4.39 0.66 4.39 4.03 3.41 0.00 2.44 1.03 3.95 0.90 1.43 K intron_retention CG12316 chr3L - chr3L_15129405_15129573 chr3L_15129404_15129405;chr3L_15129573_15129574 chr3L_15129213_15129404;chr3L_15129574_15129777 11.11 NA NA NA NA NA 11.76 NA NA NA NA 0.00 NA NA NA 14.29 NA NA NA NA NA NA 5.88 NA NA NA NA 5.26 25.00 NA NA NA NA 13.33 NA NA NA NA 11.11 NA NA 6.25 NA NA NA NA NA NA 0.00 NA NA NA NA NA 14.29 NA NA NA K jcn_only_AD CG12162,I_chr3R_1293876_1293924,I_chr3R_1294319_1294410 chr3R + chr3R_1293872_1293924 chr3R_1293876_1293924 chr3R_1293925_1294024;chr3R_1293776_1293871 0.00 0.00 2.50 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 1.33 1.06 0.00 0.00 1.65 0.00 0.00 0.00 0.00 1.83 0.00 0.70 0.00 0.00 NA 0.96 0.84 0.00 0.00 0.00 1.23 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention wb chr2L + chr2L_14327244_14327300 chr2L_14327243_14327244;chr2L_14327300_14327301 chr2L_14327110_14327243;chr2L_14327301_14327529 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA 5.26 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 NA 0.00 K intron_retention eIF-2beta,RI_chr3L_12519486_12519541 chr3L - chr3L_12519486_12519688 chr3L_12519485_12519486;chr3L_12519688_12519689 chr3L_12519386_12519485;chr3L_12519689_12519829 0.64 0.89 0.89 0.35 0.00 0.62 1.85 0.00 1.14 0.00 0.00 1.99 0.75 0.00 0.97 0.64 0.00 2.00 1.01 0.25 0.00 0.95 0.93 2.14 0.00 0.00 2.54 1.26 1.32 0.48 1.16 0.00 1.48 0.38 0.00 0.00 1.40 1.41 0.79 0.46 0.00 1.29 0.00 0.63 0.00 0.74 0.39 0.00 0.33 1.40 0.75 0.00 0.00 0.80 1.40 0.77 1.01 0.00 K intron_retention CG8378 chr2R + chr2R_8030202_8030267 chr2R_8030201_8030202;chr2R_8030267_8030268 chr2R_8030012_8030201;chr2R_8030268_8030778 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.98 100.00 K jcn_only_AA RhoGAP92B chr3R + chr3R_15737582_15738036 chr3R_15737582_15738033 chr3R_15736615_15737581;chr3R_15738037_15739398 100.00 96.92 100.00 99.55 100.00 100.00 99.02 100.00 99.63 100.00 99.21 99.55 100.00 99.22 100.00 99.14 99.14 100.00 98.68 98.97 100.00 99.36 98.98 99.32 100.00 99.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 99.44 100.00 100.00 99.62 100.00 100.00 100.00 98.28 100.00 100.00 98.35 99.38 99.40 100.00 99.00 100.00 100.00 99.25 99.40 100.00 K intron_retention Cct1,Cct2 chr3L + chr3L_1551802_1551864 chr3L_1551801_1551802;chr3L_1551864_1551865 chr3L_1551478_1551801;chr3L_1551865_1553235 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.17 0.27 0.00 0.00 0.00 1.24 1.97 0.48 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.40 0.71 0.00 0.00 0.00 0.00 0.26 0.29 0.29 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA RhoGAP68F,RI_chr3L_12133229_12134100 chr3L + chr3L_12133229_12134351;chr3L_12133229_12134239 chr3L_12133229_12134100 chr3L_12133129_12133228 1.79 1.85 0.00 0.00 0.00 0.00 6.67 3.61 2.14 0.00 1.64 5.32 3.85 1.75 0.00 0.00 0.00 2.08 0.00 1.56 0.00 16.07 1.22 10.29 2.94 0.00 5.06 0.00 4.92 1.08 2.94 5.71 1.80 5.06 2.56 3.77 0.97 3.77 2.33 1.25 0.00 3.51 2.17 0.00 4.94 0.00 5.17 1.79 3.26 0.00 1.49 3.12 0.00 0.00 2.00 0.00 2.13 1.47 K jcn_only_AD CG17078 chr2L - chr2L_276904_276973 chr2L_276904_276958 chr2L_276739_276903;chr2L_276974_277212 92.41 96.67 89.66 94.12 90.62 92.86 91.18 90.00 93.33 NA 91.18 95.83 95.83 90.48 92.86 95.83 93.10 92.31 93.55 87.50 92.31 90.74 85.00 84.00 NA 93.33 92.31 84.62 97.22 97.14 100.00 90.48 89.71 92.50 86.21 88.00 92.31 NA 89.66 89.83 93.10 96.08 100.00 94.59 97.56 96.67 NA 97.14 90.91 NA 82.86 NA 88.00 NA 100.00 88.24 100.00 97.01 N jcn_only_AD scro chr3LHet + chr3LHet_211841_224236;chr3LHet_217520_224236 chr3LHet_223864_224236 chr3LHet_224237_224245 87.23 NA NA 81.82 NA NA NA 87.50 NA NA NA NA NA NA NA 86.96 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.77 NA NA NA NA NA NA NA NA NA K intron_retention Uba2 chr3L - chr3L_8120399_8120451 chr3L_8120398_8120399;chr3L_8120451_8120452 chr3L_8120111_8120398;chr3L_8120452_8120606 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 K alternative_acceptor mask,I_chr3R_20073365_20073461 chr3R + chr3R_20066767_20066839 chr3R_20066767_20066836 chr3R_20065551_20066766;chr3R_20066840_20066876 96.97 97.37 100.00 97.26 100.00 100.00 95.38 94.44 96.15 88.00 100.00 95.79 96.67 97.30 98.21 98.04 93.88 95.45 100.00 97.50 97.22 100.00 93.65 97.73 95.24 98.00 96.30 96.30 93.33 97.96 93.62 90.00 97.92 97.73 88.57 97.06 93.33 97.37 96.92 97.01 100.00 96.40 94.87 98.21 88.89 100.00 95.83 97.56 95.56 NA 91.55 100.00 93.10 90.00 98.36 100.00 90.00 95.00 K intron_retention E2f2 chr2L - chr2L_21154986_21155106 chr2L_21154985_21154986;chr2L_21155106_21155107 chr2L_21154646_21154985;chr2L_21155107_21155365 0.00 0.00 0.00 2.38 0.00 0.00 2.27 1.72 1.05 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 1.08 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.75 0.00 0.80 0.97 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.63 0.00 K intron_retention key,I_chr2R_20674247_20674291,I_chr2R_20674567_20674813,I_chr2R_20674654_20674897,RI_chr2R_20676692_20676888 chr2R - chr2R_20674067_20674124 chr2R_20674066_20674067;chr2R_20674124_20674125 chr2R_20673762_20674066;chr2R_20674125_20674222 0.00 0.00 0.00 1.63 0.00 0.98 0.58 0.52 0.33 0.00 0.00 1.32 0.00 0.00 0.70 0.00 0.81 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.93 3.55 2.44 0.00 1.72 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.00 0.00 0.00 0.81 0.00 0.00 0.87 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor cnn,I_chr2R_9333096_9336723,I_chr2R_9333096_9336812,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9334834_9336723;chr2R_9334834_9336501;chr2R_9334834_9336719 chr2R_9334834_9336812 chr2R_9334744_9334833;chr2R_9336813_9336819 12.12 0.00 6.67 10.71 11.11 9.09 9.76 16.13 14.58 15.79 26.67 13.16 33.33 11.76 15.38 12.12 25.00 0.00 5.56 15.56 8.33 24.32 11.76 22.22 10.53 10.00 17.65 11.43 10.26 9.09 17.39 9.09 15.79 12.50 23.08 22.22 14.81 18.18 15.38 6.52 19.05 8.00 7.69 15.91 0.00 26.92 12.50 8.89 3.12 27.78 4.35 11.76 12.50 11.11 15.79 8.33 30.00 10.53 K jcn_only_AA cryptocephal,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21312209_21318320 chr2L_21312209_21318126 chr2L_21312125_21312208;chr2L_21318321_21318416 100.00 100.00 100.00 99.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.85 100.00 99.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention shu,usnp chr2R - chr2R_19731833_19731901 chr2R_19731832_19731833;chr2R_19731901_19731902 chr2R_19730956_19731832;chr2R_19731902_19732256 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 1.16 1.25 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA aux chr3R + chr3R_48913_50392 chr3R_48913_50320 chr3R_47980_48912;chr3R_50393_50730 100.00 100.00 100.00 98.99 98.18 100.00 100.00 100.00 99.19 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.28 100.00 100.00 100.00 98.61 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.41 100.00 98.88 98.48 96.88 100.00 100.00 98.46 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 97.87 97.62 100.00 100.00 100.00 100.00 K alternative_acceptor CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20824631_20825283 chr2L_20824631_20825271 chr2L_20824625_20824630;chr2L_20825284_20825366 93.54 100.00 91.67 100.00 NA NA 83.33 92.86 89.47 87.50 100.00 92.86 85.71 NA 100.00 92.31 88.89 100.00 100.00 96.00 NA 93.33 90.00 100.00 100.00 NA 100.00 88.89 90.91 100.00 88.89 91.67 92.31 100.00 100.00 100.00 100.00 100.00 100.00 86.49 100.00 92.31 NA 91.67 91.67 95.45 100.00 84.62 93.75 92.86 100.00 NA 100.00 100.00 90.91 100.00 92.86 85.19 K intron_retention CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3083810_3085203 chr3L_3083809_3083810;chr3L_3085203_3085204 chr3L_3083733_3083809;chr3L_3085204_3085298 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Imp,I_chrX_10699490_10700695,RI_chrX_10699665_10700501,RI_chrX_10699665_10700695 chrX - chrX_10699665_10700501;chrX_10699503_10700501 chrX_10699547_10700501 chrX_10700502_10700547;chrX_10699299_10699502 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG14711,CG18764,CG14712 chr3R + chr3R_7449268_7449322 chr3R_7449267_7449268;chr3R_7449322_7449323 chr3R_7449114_7449267;chr3R_7449323_7449448 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Mnt chrX + chrX_3593821_3593965 chrX_3593821_3593962 chrX_3593720_3593820;chrX_3593966_3594497 13.95 16.67 12.50 20.83 8.70 21.43 13.95 12.82 13.92 4.76 14.71 14.52 10.00 7.69 12.12 20.83 7.69 13.33 8.82 10.99 23.33 27.27 14.52 21.88 24.00 17.65 15.79 NA NA 13.33 4.76 NA 3.70 12.77 20.00 NA 14.75 23.08 23.26 6.90 NA 11.90 11.11 26.09 NA NA 19.23 14.29 28.30 8.00 22.86 10.00 NA NA 3.85 NA NA NA K jcn_only_AD CG11266,RI_chr2L_7033019_7034764,I_chr2L_7034274_7035406,I_chr2L_7051093_7051366 chr2L + chr2L_7032836_7032903 chr2L_7032840_7032903 chr2L_7032904_7033018;chr2L_7032797_7032835 91.40 NA NA NA NA NA NA NA NA NA NA 90.48 NA NA NA 92.31 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K multi_cassette CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21275807_21281131 chr2L_21275807_21277229;chr2L_21278430_21279883;chr2L_21280448_21281131 chr2L_21277230_21278429;chr2L_21279884_21280447 chr2L_21275724_21275806;chr2L_21281132_21281337 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Hel25E,I_chr2L_5540301_5540396 chr2L - chr2L_5539645_5539706 chr2L_5539644_5539645;chr2L_5539706_5539707 chr2L_5539334_5539644;chr2L_5539707_5540109 0.20 0.00 0.76 0.31 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.35 0.00 0.76 0.30 0.20 0.00 0.00 0.30 0.00 0.00 0.00 0.21 0.25 0.00 0.00 0.45 2.07 0.00 0.00 0.00 0.48 0.74 0.41 0.77 0.84 0.00 0.00 0.23 0.25 0.92 0.51 0.40 0.00 0.39 0.52 0.00 1.18 0.66 0.45 0.00 0.00 0.37 0.00 0.00 0.40 0.19 0.00 K intron_retention Dsor1,chrX_9141950_9142262.0,chrX_9142356_9142574.0 chrX + chrX_9141942_9142574 chrX_9141941_9141942;chrX_9142574_9142575 chrX_9141376_9141941;chrX_9142575_9143214 14.29 16.00 NA 46.15 NA NA NA 23.08 4.35 NA NA 15.79 NA NA NA NA NA NA NA 15.38 NA 24.24 9.09 10.00 NA NA 12.50 46.15 0.00 25.00 29.41 26.67 NA 25.00 14.29 15.38 6.67 0.00 10.00 28.57 NA 12.00 NA 6.67 NA 21.43 4.76 NA 8.33 0.00 26.32 14.29 0.00 12.50 NA 18.18 NA NA K intron_retention CG2162,EI_chr3L_3035365_3037783,I_chr3L_3039516_3039562 chr3L + chr3L_3036902_3037783 chr3L_3036901_3036902;chr3L_3037783_3037784 chr3L_3036729_3036901;chr3L_3037784_3037883 3.55 3.51 2.86 2.68 5.17 0.00 10.14 4.46 5.13 8.70 3.77 5.77 9.09 4.17 3.12 3.16 0.00 4.29 4.23 5.10 3.45 2.44 2.25 5.63 2.70 3.85 7.84 0.00 15.79 0.00 3.85 4.44 0.91 3.19 0.00 11.48 4.29 0.00 3.23 3.19 5.13 2.34 3.77 0.00 6.45 3.70 7.27 2.22 3.55 2.22 6.58 1.79 0.00 3.33 0.00 4.35 5.77 2.25 K intron_retention CG31216 chr3R + chr3R_15522379_15523033 chr3R_15522378_15522379;chr3R_15523033_15523034 chr3R_15522274_15522378;chr3R_15523034_15523168 1.82 5.56 0.00 1.25 0.00 0.00 5.63 1.16 1.90 0.00 0.00 2.68 0.00 3.51 6.90 1.28 0.00 2.56 0.00 2.54 0.00 31.75 6.78 0.00 5.00 5.77 7.41 5.41 6.90 1.82 2.60 0.00 0.00 2.44 3.33 4.17 6.82 0.00 0.00 2.11 1.28 3.57 5.36 2.08 2.38 1.67 0.00 2.13 3.26 0.00 5.77 0.00 0.00 0.00 0.00 0.00 0.00 1.39 K alternative_donor CG3337,I_chr3R_17048917_17048974 chr3R - chr3R_17048917_17048978 chr3R_17048917_17048974 chr3R_17048817_17048916;chr3R_17048979_17049074 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention Grip71 chr2L + chr2L_18709482_18709543 chr2L_18709481_18709482;chr2L_18709543_18709544 chr2L_18709187_18709481;chr2L_18709544_18710385 2.08 0.00 4.35 13.33 0.00 4.35 0.00 6.82 1.64 NA 5.56 2.08 4.35 0.00 0.00 0.00 0.00 3.57 3.33 5.00 0.00 11.11 12.90 9.09 NA 9.68 19.05 NA 6.67 0.00 20.00 0.00 0.00 4.00 6.25 0.00 13.04 6.67 13.04 4.17 0.00 9.09 0.00 NA 0.00 6.06 0.00 0.00 5.26 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mr,I_chr2R_19861985_19862040 chr2R + chr2R_19861985_19862035 chr2R_19861984_19861985;chr2R_19862035_19862036 chr2R_19861885_19861984;chr2R_19862036_19862299 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 4.44 NA 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 3.23 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 13.33 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention l(2)k14505,I_chr2L_21275807_21277205 chr2L + chr2L_21261720_21261776 chr2L_21261719_21261720;chr2L_21261776_21261777 chr2L_21261412_21261719;chr2L_21261777_21261890 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.71 1.32 0.00 0.00 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.80 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.46 0.00 K jcn_only_AA RanBPM chr2R + chr2R_6322096_6322156;chr2R_6322096_6322141 chr2R_6322096_6322150 chr2R_6321932_6322095;chr2R_6322157_6322290 68.24 64.66 71.15 61.38 71.01 65.88 62.34 74.48 69.23 63.16 63.24 67.80 69.66 76.09 63.48 65.32 73.13 76.54 63.89 62.50 68.54 70.95 68.90 68.14 68.24 68.48 74.48 72.22 64.29 67.86 67.39 63.38 74.12 66.90 76.70 77.19 68.29 68.87 67.13 71.33 68.85 67.69 58.90 66.39 68.32 69.15 70.97 67.31 64.97 75.00 67.41 76.67 62.63 67.59 58.68 70.53 68.42 67.90 K jcn_only_AA RI_chrX_7172561_7252693,CG1677 chrX - chrX_7175780_7175855 chrX_7175783_7175855 chrX_7175856_7175993;chrX_7175138_7175779 82.14 84.93 81.93 82.42 80.33 84.62 80.49 79.21 80.12 85.11 70.83 78.29 87.23 87.50 82.89 77.59 86.79 83.33 79.03 76.15 83.05 88.16 77.88 85.29 72.09 83.05 82.14 90.48 78.79 89.66 85.92 89.47 80.41 85.96 86.96 78.43 79.63 81.52 76.00 85.87 81.08 86.75 77.59 85.14 88.16 80.00 87.50 82.61 81.48 84.75 78.89 78.12 79.41 78.72 81.61 82.30 82.68 82.08 K alternative_donor fws,CG6453 chr2L - chr2L_17480920_17480968;chr2L_17480920_17480972;chr2L_17480920_17480983 chr2L_17480920_17481149 chr2L_17480825_17480919;chr2L_17481150_17481199 0.00 0.00 0.00 0.00 0.00 16.67 0.00 0.00 0.00 NA 0.00 0.00 0.00 20.00 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 NA NA 20.00 0.00 25.00 NA NA NA NA 0.00 NA 20.00 0.00 K intron_retention CG9175 chr2L - chr2L_6097474_6097543 chr2L_6097473_6097474;chr2L_6097543_6097544 chr2L_6097311_6097473;chr2L_6097544_6098489 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.80 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor KrT95D,I_chr3R_19825840_19825904 chr3R - chr3R_19856581_19857433 chr3R_19856754_19857433 chr3R_19857434_19857527;chr3R_19856216_19856580 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042888_5042960;chr2L_5042888_5042983 chr2L_5042888_5043077 chr2L_5042835_5042887;chr2L_5043078_5043083 12.02 NA NA 11.54 NA NA 8.00 25.93 21.05 NA NA 18.42 NA NA 12.50 18.18 NA NA 13.64 19.05 NA NA 22.73 3.57 NA NA NA NA 19.05 4.76 NA NA 0.00 9.38 NA NA NA NA NA 5.41 0.00 6.06 NA NA NA 10.00 18.18 3.57 12.90 NA 0.00 NA NA NA 25.00 NA 15.38 0.00 K intron_retention CG17737,I_chr3L_3223527_3224313,I_chr3L_3223650_3223769,I_chr3L_3223943_3224313 chr3L + chr3L_3223527_3224313 chr3L_3223526_3223527;chr3L_3224313_3224314 chr3L_3223475_3223526;chr3L_3224314_3224413 8.70 NA NA 8.70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814174;chr2R_2814327_2816013;chr2R_2816342_2816577;chr2R_2816779_2817459;chr2R_2817604_2817753 chr2R_2814175_2814326;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817460_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD ttk,I_chr3R_27554202_27554334,I_chr3R_27554601_27555353 chr3R + chr3R_27550933_27552853 chr3R_27551054_27552853 chr3R_27552854_27553156;chr3R_27550864_27550932 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 96.97 NA NA NA NA NA 100.00 NA NA NA K intron_retention ssp4,I_chr2R_13409412_13410357,RI_chr2R_13409412_13411004,I_chr2R_13409412_13411328,I_chr2R_13409412_13411588,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13408434_13411588 chr2R_13408433_13408434;chr2R_13411588_13411589 chr2R_13408151_13408433;chr2R_13411589_13411688 42.48 42.86 69.23 33.33 33.33 40.00 25.00 66.67 48.84 13.33 12.50 60.00 33.33 46.67 45.45 61.90 57.14 42.86 55.00 82.35 31.25 7.14 42.11 45.45 NA 19.05 43.75 42.86 9.09 30.77 54.55 NA 50.00 50.00 53.85 NA 40.00 40.00 25.00 24.32 14.29 45.95 45.45 29.41 NA 38.46 NA 63.64 64.00 20.00 26.67 50.00 NA NA 40.91 35.71 NA NA K intron_retention Cg25C chr2L + chr2L_5036209_5036476 chr2L_5036208_5036209;chr2L_5036476_5036477 chr2L_5035064_5036208;chr2L_5036477_5037243 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.12 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.05 0.00 K intron_retention Mdh,grass chr3R + chr3R_22984567_22984624 chr3R_22984566_22984567;chr3R_22984624_22984625 chr3R_22984353_22984566;chr3R_22984625_22984673 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Rpn5 chr3R + chr3R_1615416_1615491;chr3R_1615433_1615491 chr3R_1615437_1615491 chr3R_1615492_1616546;chr3R_1615400_1615415 0.00 1.14 0.00 0.54 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 1.10 1.80 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 1.33 0.00 0.00 1.41 0.00 0.00 0.00 0.84 0.51 0.64 0.00 0.00 1.16 1.92 0.00 0.65 0.78 1.73 0.00 0.00 0.85 0.58 0.00 0.00 0.00 0.00 0.00 1.85 0.00 2.17 1.71 2.13 0.00 0.00 K intron_retention CG3209,I_chr2R_19957751_19959513,RI_chr2R_19957766_19960227,I_chr2R_19959163_19959513 chr2R + chr2R_19958528_19960227 chr2R_19958527_19958528;chr2R_19960227_19960228 chr2R_19958291_19958527;chr2R_19960228_19960327 90.91 NA NA NA NA NA 92.86 NA 90.91 NA NA 70.00 NA NA NA NA NA NA NA 80.00 NA NA 100.00 NA NA NA 88.89 NA NA NA NA NA NA 87.50 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA 100.00 90.91 77.78 90.00 NA NA NA NA NA NA NA K intron_retention CG11178,CG11177 chrX + chrX_13502118_13502184 chrX_13502117_13502118;chrX_13502184_13502185 chrX_13501716_13502117;chrX_13502185_13502365 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Fis1,I_chr2R_1491917_1491981,I_chr2R_1491917_1492087,I_chr2R_1492154_1492214 chr2R - chr2R_1492022_1492087 chr2R_1492021_1492022;chr2R_1492087_1492088 chr2R_1491982_1492021;chr2R_1492088_1492153 7.50 11.43 9.33 20.95 5.08 8.47 4.44 6.79 6.72 8.00 6.12 6.36 7.48 11.76 9.84 8.84 8.24 9.23 6.31 7.00 7.25 0.00 9.89 5.75 8.00 20.83 13.75 9.09 14.71 6.98 5.56 3.57 7.50 7.47 6.56 17.14 3.85 1.61 1.39 8.24 14.29 6.01 5.19 7.94 9.68 8.16 4.44 16.67 11.39 10.11 6.25 11.32 3.12 4.44 6.19 9.59 3.82 12.12 K alternative_donor Drp1 chr2L - chr2L_2582403_2582469 chr2L_2582403_2582465 chr2L_2582174_2582402;chr2L_2582470_2582811 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Rga,Spec2 chr3R - chr3R_1434742_1435353 chr3R_1434741_1434742;chr3R_1435353_1435354 chr3R_1434172_1434741;chr3R_1435354_1435603 2.50 2.50 0.00 0.00 4.17 0.00 5.36 2.86 2.02 8.89 5.41 3.16 11.90 5.13 3.92 3.28 0.00 0.00 0.00 2.02 0.00 2.96 2.91 3.30 4.88 0.00 3.80 6.06 0.00 0.00 3.08 1.92 2.15 5.48 4.11 0.00 4.17 2.35 1.89 7.53 4.21 4.21 0.00 7.14 2.63 2.11 1.72 0.00 5.05 3.57 3.30 2.33 0.00 2.15 1.54 2.20 0.00 0.00 K alternative_acceptor wge,Irp-1A,I_chr3R_18549791_18549839 chr3R - chr3R_18549774_18549839 chr3R_18549791_18549839 chr3R_18549840_18549939;chr3R_18549691_18549773 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG30033 chr2R + chr2R_7180156_7180214 chr2R_7180155_7180156;chr2R_7180214_7180215 chr2R_7180033_7180155;chr2R_7180215_7180243 100.00 100.00 NA 100.00 NA NA 100.00 NA 100.00 NA NA 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 100.00 100.00 NA 100.00 95.00 NA 100.00 NA 100.00 100.00 100.00 90.91 100.00 100.00 K jcn_only_AA Gs1l,I_chr2L_4456517_4456723,I_chr2L_4458058_4458120 chr2L - chr2L_4456517_4456725 chr2L_4456521_4456725 chr2L_4456726_4456801;chr2L_4456417_4456516 97.83 NA NA NA NA NA NA NA 95.65 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG1021,I_chr3R_2217711_2231099,I_chr3R_2217711_2231390,RI_chr3R_2217711_2231463,I_chr3R_2217742_2218601,I_chr3R_2217742_2219453,I_chr3R_2218465_2231390,RI_chr3R_2218465_2231463,I_chr3R_2218682_2231463,I_chr3R_2219634_2231390,I_chr3R_2231383_2231463 chr3R - chr3R_2218465_2231463;chr3R_2217711_2219453;chr3R_2217711_2231463;chr3R_2218465_2219453 chr3R_2218465_2218601,chr3R_2217711_2218601;chr3R_2218682_2219453,chr3R_2218682_2231463 chr3R_2218602_2218681 chr3R_2217642_2217710;chr3R_2231464_2231490 65.22 66.67 64.71 82.61 75.00 73.33 30.00 81.82 62.50 58.82 85.71 66.67 65.22 58.33 75.00 57.69 77.78 71.43 72.22 75.00 75.00 56.86 71.43 85.19 68.18 61.11 63.64 47.37 25.00 55.56 47.06 61.54 61.11 75.00 65.22 70.83 60.47 69.23 65.79 70.21 50.00 64.10 72.73 57.58 37.50 52.00 66.67 48.57 58.82 61.36 62.86 83.33 65.00 68.42 62.50 72.73 67.35 57.14 K intron_retention I_chrX_4000307_4003527,CG4857 chrX + chrX_4011929_4011996 chrX_4011928_4011929;chrX_4011996_4011997 chrX_4011804_4011928;chrX_4011997_4012308 8.00 NA 5.56 23.81 0.00 10.53 13.04 0.00 3.03 NA NA 14.29 NA NA 11.76 0.00 6.67 0.00 13.33 5.00 NA 25.00 8.33 14.29 0.00 0.00 20.83 13.04 6.25 3.23 2.53 NA 13.64 12.00 9.09 8.70 0.00 0.00 13.79 10.91 0.00 11.43 NA 3.23 0.00 13.64 0.00 10.34 6.67 11.76 0.00 NA NA 9.52 8.00 12.50 0.00 0.00 K intron_retention CG10433 chr2R - chr2R_17494123_17494185 chr2R_17494122_17494123;chr2R_17494185_17494186 chr2R_17494054_17494122;chr2R_17494186_17494254 0.54 0.26 0.32 1.52 0.00 0.59 0.59 0.84 0.67 0.45 0.44 0.51 0.23 0.25 0.21 0.29 0.00 0.44 0.97 0.39 0.48 3.58 0.60 0.64 0.98 1.83 0.71 1.01 3.87 0.57 0.44 0.96 0.91 0.40 0.32 0.94 0.61 0.27 0.43 0.52 0.94 0.66 0.60 0.41 0.53 0.81 0.43 2.19 0.76 0.54 0.78 0.17 0.39 0.33 0.00 0.71 0.37 0.98 K intron_retention CtBP chr3R + chr3R_8837471_8845063 chr3R_8837470_8837471;chr3R_8845063_8845064 chr3R_8837339_8837470;chr3R_8845064_8845536 65.41 68.42 61.29 56.45 70.37 61.36 84.31 58.54 68.00 80.00 66.67 63.64 59.18 70.00 57.81 68.75 66.67 62.96 62.00 77.42 61.11 82.14 76.19 44.00 70.00 73.68 65.00 88.24 75.00 73.33 65.31 50.00 65.52 64.56 72.22 78.26 62.50 53.85 83.33 75.61 35.29 54.12 65.79 80.00 30.77 27.78 NA 73.81 61.96 53.85 72.22 53.57 66.67 NA 62.50 33.33 NA 50.00 K alternative_last_exon hts,I_chr2R_15286599_15294119,CG34197,I_chr2R_15293594_15294119,RI_chr2R_15294446_15295345,I_chr2R_15294825_15295345,I_chr2R_15295410_15295479,I_chr2R_15311185_15312327,I_chr2R_15311303_15312026 chr2R - chr2R_15294825_15295345;chr2R_15293594_15295345;chr2R_15294662_15295345;chr2R_15286599_15295345 chr2R_15288861_15295345 chr2R_15293525_15293593;chr2R_15294405_15294661;chr2R_15286527_15286598 chr2R_15287023_15288860 chr2R_15295346_15295409 15.75 20.83 17.98 17.12 22.22 15.73 23.29 17.56 19.00 25.93 29.79 13.08 15.62 16.25 20.93 16.30 15.25 17.11 15.79 16.53 21.31 8.77 16.33 16.25 15.25 11.39 16.48 27.50 15.22 22.81 12.00 10.34 18.18 17.83 12.07 12.99 22.97 16.13 19.13 11.64 11.86 16.07 17.91 13.89 8.96 8.55 9.59 10.45 14.92 8.45 14.53 12.90 8.45 8.20 15.75 10.26 10.71 6.09 K intron_retention CG1265,I_chr3L_4255296_4255550 chr3L + chr3L_4254969_4255035 chr3L_4254968_4254969;chr3L_4255035_4255036 chr3L_4254787_4254968;chr3L_4255036_4255292 0.00 0.00 0.00 0.00 0.00 0.00 1.04 1.15 0.00 0.00 1.59 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 5.26 1.47 0.00 0.00 0.00 3.28 7.69 13.79 0.00 0.00 2.17 0.00 1.52 0.00 0.00 1.43 1.82 0.00 0.00 0.00 1.70 0.00 1.59 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 2.13 1.23 0.00 0.00 0.00 0.00 K jcn_only_AA I_chr3R_22696095_22697413,Rb97D chr3R - chr3R_22699278_22699581 chr3R_22699401_22699581 chr3R_22699582_22699720;chr3R_22698253_22699277 39.08 35.29 15.00 73.47 40.00 41.67 53.33 48.65 31.34 57.35 NA 35.56 30.00 NA 39.13 40.74 59.09 NA 28.57 34.69 37.50 4.65 55.17 50.00 51.61 45.45 51.11 NA 40.00 42.11 NA NA 30.77 30.56 31.82 44.12 30.19 38.00 41.54 37.50 NA 23.68 37.50 38.24 19.23 25.71 50.00 NA 48.94 43.14 31.11 33.33 41.67 39.39 47.83 39.02 27.03 NA K alternative_acceptor Cnx99A,I_chr3R_25142581_25142644,I_chr3R_25144335_25145173,I_chr3R_25145243_25145309,I_chr3R_25145256_25145426 chr3R - chr3R_25142581_25142644 chr3R_25142583_25142644 chr3R_25142645_25142744;chr3R_25142481_25142580 100.00 100.00 100.00 99.65 100.00 99.46 100.00 100.00 99.74 100.00 100.00 100.00 100.00 100.00 100.00 99.56 99.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.46 100.00 99.34 100.00 99.56 100.00 100.00 99.67 100.00 98.92 99.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.98 100.00 99.36 100.00 99.49 100.00 100.00 99.16 100.00 100.00 99.38 99.38 99.28 K mutually_exclusive slgA,I_chrX_21247694_21251677,I_chrX_21251760_21251908,I_chrX_21253735_21253820 chrX + chrX_21247694_21250999,chrX_21251122_21251677 chrX_21247694_21250614,chrX_21250737_21251677 chrX_21251000_21251121 chrX_21250615_21250736 chrX_21247594_21247693;chrX_21251678_21251759 70.00 66.67 72.22 68.42 60.00 60.00 100.00 76.47 69.23 83.33 100.00 45.83 100.00 76.92 72.73 75.00 25.00 44.44 85.71 70.00 57.14 40.00 60.00 76.47 55.56 42.86 61.54 NA 57.14 80.00 72.22 83.33 80.00 76.47 57.14 NA 47.62 64.71 58.82 66.67 NA 65.22 70.00 53.33 NA 72.73 72.73 78.57 72.73 75.00 70.00 76.47 62.50 57.14 64.29 76.92 NA NA K alternative_acceptor CG33969,I_chr3L_20390576_20390678 chr3L - chr3L_20386317_20386378 chr3L_20386326_20386378 chr3L_20386379_20386446;chr3L_20386251_20386316 76.47 87.50 64.71 76.00 62.50 76.47 76.09 70.00 72.92 85.71 75.00 83.33 85.00 66.67 80.00 74.07 77.78 76.19 74.07 84.62 70.83 72.41 84.85 78.57 64.71 73.68 70.00 81.82 75.00 74.19 79.07 79.17 78.05 74.19 87.50 85.71 78.12 75.00 69.23 79.55 77.50 80.00 86.67 84.62 80.77 76.74 75.00 76.19 74.29 76.19 75.00 73.91 90.00 81.25 83.33 66.67 94.44 78.12 K intron_retention CG7145,I_chr3L_21832928_21833150,I_chr3L_21832932_21833106 chr3L - chr3L_21831535_21831591 chr3L_21831534_21831535;chr3L_21831591_21831592 chr3L_21831312_21831534;chr3L_21831592_21831779 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 4.76 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 5.88 0.00 0.00 0.00 0.00 NA NA 2.56 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 12.50 K mutually_exclusive CG14425,Sxl,CG14425_Sxl,CEFI_chrX_6981717_6984166,CEF_chrX_6984538_6992033 chrX - chrX_6981693_6985706,chrX_6986204_6992033 chrX_6981693_6982610,chrX_6982783_6992033 chrX_6985707_6986203 chrX_6982611_6982782 chrX_6981647_6981692;chrX_6992034_6992068 66.67 NA NA 80.00 NA 66.67 NA 66.67 75.00 NA NA 50.00 NA NA 75.00 NA 50.00 NA 60.00 NA 50.00 60.00 80.00 80.00 NA 60.00 66.67 NA NA 66.67 NA NA 50.00 66.67 NA 66.67 NA NA 40.00 85.71 NA 42.86 NA NA NA 66.67 NA NA 50.00 71.43 40.00 NA NA 50.00 75.00 NA NA 75.00 K intron_retention R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083458_8089356 chr2L_8083457_8083458;chr2L_8089356_8089357 chr2L_8083444_8083457;chr2L_8089357_8089736 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA 95.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA 100.00 K intron_retention vib,RI_chr3R_15051793_15051920,RI_chr3R_15051793_15052186 chr3R - chr3R_15051793_15051920 chr3R_15051792_15051793;chr3R_15051920_15051921 chr3R_15051737_15051792;chr3R_15051921_15052020 25.00 NA NA NA NA NA 46.15 25.00 22.22 NA NA 46.15 NA NA NA 15.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA NA 27.78 NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA K cassette CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8180030_8182304 chr2L_8180030_8181983;chr2L_8182050_8182304 chr2L_8181984_8182049 chr2L_8179872_8180029;chr2L_8182305_8182450 94.23 96.37 96.96 94.02 93.16 94.02 65.35 95.74 95.47 95.40 84.70 94.23 98.04 96.60 93.75 97.97 96.12 92.27 93.03 96.27 93.62 96.41 96.90 95.91 89.86 92.27 90.73 83.33 73.91 94.35 98.33 94.74 87.84 96.40 96.58 46.50 94.64 92.76 93.03 87.73 87.06 95.91 92.78 95.65 74.19 95.14 96.62 89.02 94.59 93.60 93.83 93.98 94.67 98.04 95.56 96.69 93.25 92.73 K jcn_only_AD I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,I_chr3R_17183927_17184513,I_chr3R_17183927_17185306 chr3R - chr3R_17183927_17184513;chr3R_17183927_17185306;chr3R_17183927_17200781 chr3R_17183927_17184082 chr3R_17183827_17183926 49.17 38.46 46.00 45.95 36.59 57.14 45.00 49.21 49.17 60.53 45.00 45.83 47.50 31.58 41.67 50.00 65.62 37.21 51.06 38.89 59.57 36.07 53.33 50.70 64.79 62.75 55.56 61.90 53.85 55.41 82.54 28.36 28.70 46.58 44.90 52.24 47.47 53.62 43.40 44.83 45.31 45.45 55.77 61.54 23.58 36.54 49.45 29.25 50.00 57.97 52.38 47.37 63.01 54.35 48.15 50.00 71.88 35.14 K jcn_only_AD CG4699 chr3R + chr3R_11624200_11624442;chr3R_11624190_11624442;chr3R_11624127_11624442 chr3R_11624133_11624442 chr3R_11624443_11624758;chr3R_11623809_11624126 9.55 7.48 12.90 15.56 26.32 18.03 6.90 12.20 15.33 4.55 10.71 11.68 10.00 15.69 13.92 9.86 9.80 4.76 15.09 9.55 21.62 7.69 4.87 3.70 4.42 8.20 10.22 8.72 13.11 8.79 12.12 6.12 15.00 9.57 10.34 6.49 9.17 6.75 6.25 1.83 5.93 10.48 8.33 5.59 14.88 12.40 5.15 11.47 11.01 9.20 4.60 3.37 7.48 6.14 17.14 3.57 3.41 13.33 K jcn_only_AA CG16971,I_chr3L_225856_225909,RI_chr3L_225919_226004,noncoding_9600,RI_chr3L_229245_229590,I_chr3L_229245_229599,I_chr3L_229245_230186,I_chr3L_229653_229708 chr3L + chr3L_229245_229599 chr3L_229245_229588 chr3L_229145_229244;chr3L_229600_229652 97.14 NA NA NA NA NA 97.67 NA 97.73 98.25 96.67 NA 95.83 NA NA NA NA NA NA 100.00 97.67 95.38 97.06 96.30 92.31 92.86 90.00 97.14 98.91 NA NA NA 97.60 100.00 96.30 92.86 100.00 100.00 100.00 100.00 100.00 100.00 NA 96.23 95.92 93.48 100.00 90.00 95.45 96.97 95.45 100.00 NA NA NA 97.22 100.00 96.55 K intron_retention Nipped-B,I_chr2R_580989_582555,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_579516_579583 chr2R_579515_579516;chr2R_579583_579584 chr2R_579318_579515;chr2R_579584_579751 0.00 0.00 0.00 4.17 0.00 0.00 1.15 0.00 1.71 0.00 0.00 0.81 0.00 0.00 1.54 1.72 1.47 0.00 0.00 2.42 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 1.67 1.83 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 1.30 K cassette Tsp42Ee,RI_chr2R_2904593_2904783 chr2R + chr2R_2899841_2904517 chr2R_2899841_2900537;chr2R_2901155_2904517 chr2R_2900538_2901154 chr2R_2899753_2899840;chr2R_2904518_2904592 98.28 97.47 98.38 98.74 98.54 97.14 92.92 98.35 98.81 90.32 95.83 99.31 99.53 99.54 96.74 98.28 98.44 99.02 97.79 99.65 98.14 93.55 98.77 97.87 97.08 97.33 94.34 90.60 86.47 97.78 98.41 97.73 98.56 99.20 97.45 95.97 99.08 98.64 98.28 98.18 95.10 99.07 99.50 97.70 94.89 97.77 98.91 98.31 98.30 98.21 99.49 99.30 98.46 99.12 99.01 99.42 98.17 97.70 K intron_retention Acyp2,CG4699 chr3R + chr3R_11618624_11618678 chr3R_11618623_11618624;chr3R_11618678_11618679 chr3R_11618415_11618623;chr3R_11618679_11618695 21.43 NA NA NA NA NA 45.45 NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.38 NA 30.77 NA NA NA 21.43 NA 14.29 11.76 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25318474_25319136;chr3R_25318474_25319142;chr3R_25318474_25318925;chr3R_25318474_25319093;chr3R_25318474_25318971;chr3R_25318474_25319004;chr3R_25318474_25319167 chr3R_25318474_25319163 chr3R_25318374_25318473;chr3R_25319168_25319224 2.17 2.02 2.17 1.54 2.34 2.09 2.12 2.66 2.78 4.08 2.30 2.42 4.08 0.49 3.04 1.72 1.97 1.30 3.52 2.47 2.16 2.65 1.10 2.24 1.72 2.09 2.67 2.17 2.90 2.53 4.11 1.70 4.10 1.85 2.17 1.83 2.63 4.80 4.14 0.88 2.31 1.62 0.91 3.44 1.22 1.29 2.65 0.00 1.58 2.99 1.67 2.26 2.40 2.17 2.06 2.68 1.26 2.99 K jcn_only_AD eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341925_20342041;chr3L_20341636_20342041;chr3L_20341509_20342041;chr3L_20341865_20342041;chr3L_20341486_20342041;chr3L_20341522_20342041;chr3L_20341751_20342041;chr3L_20341530_20342041;chr3L_20341598_20342041;chr3L_20341759_20342041 chr3L_20341629_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG42557,noncoding_20025,RI_chr3R_25759681_25759960 chr3R + chr3R_25759085_25759188 chr3R_25759084_25759085;chr3R_25759188_25759189 chr3R_25759078_25759084;chr3R_25759189_25759219 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 90.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention I_chrX_5794457_5796722,Act5C,I_chrX_5796187_5796722,I_chrX_5796328_5796722,I_chrX_5796578_5796722 chrX + chrX_5795047_5796722 chrX_5795046_5795047;chrX_5796722_5796723 chrX_5794917_5795046;chrX_5796723_5796822 0.24 0.25 0.19 0.21 0.46 0.23 0.35 0.39 0.19 0.00 0.36 0.41 0.32 0.21 0.18 0.15 0.34 0.33 0.25 0.14 0.25 0.33 0.25 0.00 0.46 0.25 0.93 1.82 0.84 0.00 0.20 0.00 0.00 0.23 0.28 0.23 0.24 0.39 0.00 0.00 0.00 0.28 0.09 0.00 0.00 0.30 0.42 0.00 0.24 0.24 0.15 0.31 0.47 0.00 0.16 0.30 0.53 0.49 K cassette CG6854,E_chr3L_15091621_15103920,RI_chr3L_15102059_15102345 chr3L + chr3L_15091617_15103915;chr3L_15091617_15102643 chr3L_15091617_15101715;chr3L_15102059_15102643,chr3L_15102059_15103915 chr3L_15101716_15102058 chr3L_15091548_15091616;chr3L_15103916_15104086 17.50 18.92 12.20 18.75 12.12 20.00 19.05 13.43 14.47 17.24 7.14 15.07 12.00 10.00 18.00 10.91 14.29 9.43 17.65 12.36 7.14 21.88 14.29 25.53 25.00 15.38 22.22 27.78 27.27 15.15 12.50 28.00 21.43 15.00 16.67 16.67 24.24 17.65 23.53 29.55 25.64 12.50 14.63 14.29 29.03 18.00 17.65 17.74 14.43 25.58 21.82 15.00 8.89 20.00 18.37 17.50 20.37 7.77 K jcn_only_AA CG7956 chr3R + chr3R_17352625_17352984 chr3R_17352625_17352877 chr3R_17351551_17352624;chr3R_17352985_17353123 1.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.70 NA NA NA NA NA NA NA NA NA 0.00 K intron_retention AGO1,I_chr2R_9844856_9845327 chr2R - chr2R_9837293_9837354 chr2R_9837292_9837293;chr2R_9837354_9837355 chr2R_9835682_9837292;chr2R_9837355_9837577 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12916527_12918637 chr2R_12916527_12918629 chr2R_12916364_12916526;chr2R_12918638_12919153 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 NA 100.00 98.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 K intron_retention zip,I_chr2R_20878796_20879147 chr2R - chr2R_20885825_20887561 chr2R_20885824_20885825;chr2R_20887561_20887562 chr2R_20885811_20885824;chr2R_20887562_20887683 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 1.67 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 3.39 0.00 8.00 0.00 K jcn_only_AA Smc5,I_chr3L_21566234_21566275 chr3L + chr3L_21566011_21566102 chr3L_21566011_21566075 chr3L_21565786_21566010;chr3L_21566103_21566233 96.61 97.37 97.44 92.21 87.10 96.88 100.00 94.68 94.57 NA 92.86 98.46 100.00 93.33 95.00 100.00 100.00 96.30 94.34 97.47 93.55 97.73 96.55 90.32 NA 100.00 100.00 NA 93.33 90.48 97.67 95.12 95.08 100.00 100.00 88.00 95.24 95.65 97.14 95.08 95.74 97.50 96.15 100.00 100.00 100.00 100.00 96.61 96.74 97.22 96.43 100.00 94.12 NA 91.11 94.44 97.62 97.83 K alternative_acceptor Papss chr3L + chr3L_19838529_19838611;chr3L_19838529_19838596 chr3L_19838529_19838634 chr3L_19838397_19838528;chr3L_19838635_19838730 1.85 8.33 10.00 5.56 0.00 NA 5.56 0.00 0.00 0.00 0.00 5.26 12.50 0.00 0.00 0.00 14.29 0.00 9.09 7.14 NA 0.00 9.52 0.00 0.00 0.00 0.00 0.00 0.00 10.00 7.69 NA 0.00 0.00 0.00 12.50 7.14 0.00 0.00 0.00 12.50 3.70 11.11 28.57 0.00 0.00 8.33 0.00 0.00 9.09 0.00 10.00 16.67 12.50 7.14 11.11 7.14 5.26 K intron_retention ps,I_chr3R_5243723_5265067,I_chr3R_5243723_5270765,noncoding_15575,I_chr3R_5245770_5265067,I_chr3R_5245770_5269732,I_chr3R_5258562_5264836,I_chr3R_5262841_5265067,RI_chr3R_5262841_5266402,I_chr3R_5265428_5266402,I_chr3R_5265428_5269732,I_chr3R_5265428_5270765,CG16777,I_chr3R_5269733_5270765 chr3R + chr3R_5245770_5257753 chr3R_5245769_5245770;chr3R_5257753_5257754 chr3R_5245740_5245769;chr3R_5257754_5258205 8.33 12.50 NA 13.95 NA NA 13.33 11.76 11.90 NA 0.00 3.33 11.11 15.79 0.00 10.87 NA 4.76 10.53 6.56 0.00 23.53 6.06 14.29 0.00 NA 8.33 NA NA 14.29 0.00 NA NA 15.15 NA 5.00 8.33 NA NA 18.52 NA 8.33 22.22 15.38 NA NA NA NA 2.56 NA 0.00 7.69 NA NA 5.56 NA NA NA K jcn_only_AD CG13585,I_chr2R_20419710_20419962,E_chr2R_20420167_20420418 chr2R + chr2R_20419160_20419962 chr2R_20419258_20419962 chr2R_20419963_20420062;chr2R_20419149_20419159 73.17 90.62 72.22 81.08 40.91 50.00 76.32 68.00 54.55 NA 60.71 60.94 51.35 76.00 66.67 74.36 48.00 68.00 70.21 76.71 73.08 87.50 78.12 74.29 75.00 61.29 80.65 NA NA 92.59 65.45 76.92 NA 66.67 NA 91.67 77.55 66.67 73.17 87.23 NA 60.27 68.97 89.19 69.23 87.04 60.61 85.00 58.90 68.97 95.00 87.50 82.93 76.92 51.22 73.17 83.33 86.67 K alternative_donor CG2818 chr2L + chr2L_3714584_3714646;chr2L_3714574_3714646 chr2L_3714492_3714646 chr2L_3714647_3716104;chr2L_3714467_3714491 66.67 76.92 69.23 62.50 NA 60.00 60.00 33.33 62.07 50.00 63.64 73.68 50.00 69.23 60.00 64.71 66.67 45.45 50.00 62.50 50.00 88.89 77.78 70.59 76.47 77.78 65.00 69.23 75.00 73.33 25.71 NA 73.91 64.71 66.67 100.00 75.00 80.00 66.67 60.00 50.00 67.65 76.92 58.82 81.82 66.67 83.33 58.82 54.17 81.82 74.07 75.00 NA 77.78 57.14 50.00 71.43 77.78 N alternative_acceptor C3G chrX - chrX_6676710_6676802 chrX_6676726_6676802 chrX_6676803_6676928;chrX_6676644_6676709 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157014_157316,RI_chr4_157014_157504,I_chr4_157794_157864 chr4 + chr4_157014_157504 chr4_157014_157316 chr4_156914_157013 50.98 NA NA NA NA NA NA NA 59.09 NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25318474_25319163;chr3R_25318474_25319142;chr3R_25318474_25318925;chr3R_25318474_25319093;chr3R_25318474_25318971;chr3R_25318474_25319004;chr3R_25318474_25319167 chr3R_25318474_25319136 chr3R_25318374_25318473;chr3R_25319168_25319224 7.74 10.89 5.43 5.25 7.81 9.62 6.35 5.32 6.15 9.69 4.60 6.46 5.44 8.25 7.43 3.43 5.42 7.36 8.37 8.31 3.02 6.90 7.71 6.72 10.00 5.02 10.68 10.14 11.62 7.58 6.39 7.23 13.11 4.01 7.61 8.72 8.73 10.80 10.21 9.51 13.08 6.16 5.00 6.87 10.76 7.71 9.44 9.64 8.13 9.24 10.58 9.81 7.19 9.51 7.90 7.74 5.81 9.58 K intron_retention Chd1,I_chr2L_2986815_2987511 chr2L - chr2L_2985586_2985640 chr2L_2985585_2985586;chr2L_2985640_2985641 chr2L_2985476_2985585;chr2L_2985641_2986150 0.00 0.00 0.00 5.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 K intron_retention CG9775,I_chr3R_464132_464367,I_chr3R_466059_466296 chr3R - chr3R_465280_465355 chr3R_465279_465280;chr3R_465355_465356 chr3R_464740_465279;chr3R_465356_465474 14.81 13.56 13.41 20.17 9.78 10.47 17.02 17.27 13.51 11.90 13.89 11.36 16.67 14.75 15.46 16.28 19.05 17.74 14.81 12.79 16.13 26.26 15.23 13.22 31.33 23.08 25.60 23.26 31.43 8.94 28.57 14.89 11.43 14.41 15.38 15.79 12.68 14.29 13.84 14.19 25.58 13.33 19.30 18.42 16.53 13.19 9.62 21.74 13.07 14.84 13.51 19.32 10.11 10.61 16.19 12.30 8.96 13.46 K intron_retention I_chrX_15223901_15223968,HDAC6,I_chrX_15232958_15233665 chrX + chrX_15232699_15232869 chrX_15232698_15232699;chrX_15232869_15232870 chrX_15232108_15232698;chrX_15232870_15232877 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 90.91 NA NA 100.00 NA 100.00 NA 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 93.33 100.00 90.00 NA 95.45 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 NA 100.00 94.74 90.00 100.00 100.00 92.86 K intron_retention Gprk2 chr3R + chr3R_27231679_27236075 chr3R_27231678_27231679;chr3R_27236075_27236076 chr3R_27230999_27231678;chr3R_27236076_27236123 9.88 7.14 8.70 13.79 11.76 10.00 16.28 15.91 14.55 NA NA 18.18 15.38 11.11 12.00 12.77 0.00 7.14 9.76 11.76 14.29 0.00 0.00 0.00 NA 5.56 NA NA 14.29 NA 10.81 NA NA 7.14 NA NA 0.00 NA NA 0.00 0.00 13.33 15.38 0.00 NA 0.00 NA 0.00 12.07 NA 0.00 NA NA NA 8.33 NA NA NA K intron_retention Roc1a chrX + chrX_541671_541735 chrX_541670_541671;chrX_541735_541736 chrX_541643_541670;chrX_541736_542644 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 1.52 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA ct chrX + chrX_7555172_7556678 chrX_7555172_7556144 chrX_7554996_7555171;chrX_7556679_7557587 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.52 0.00 0.00 0.98 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 1.79 0.00 1.61 0.00 1.85 0.00 0.00 0.00 1.82 0.95 0.00 0.00 1.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 NA 0.00 0.00 5.00 0.00 K jcn_only_AD Crk,RI_chr4_231302_233315,RI_chr4_231307_231369,RI_chr4_231307_232217,I_chr4_231307_232253 chr4 + chr4_231302_232264 chr4_231307_232264 chr4_232265_232317;chr4_231208_231301 18.75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA NA NA NA 9.09 NA 35.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 22.50 K jcn_only_AD Fps85D,I_chr3R_5194729_5194776,I_chr3R_5216796_5218450 chr3R - chr3R_5216796_5218462 chr3R_5216796_5218450 chr3R_5216696_5216795;chr3R_5218463_5218550 1.85 2.56 1.22 5.94 1.54 1.28 0.00 2.78 1.00 1.79 1.18 0.79 1.54 1.32 2.80 2.47 1.30 1.33 1.19 3.35 3.12 0.88 1.97 3.54 5.33 2.90 4.49 3.33 5.10 2.53 0.00 2.17 4.94 0.69 1.61 5.88 1.37 0.99 2.54 3.45 3.77 0.69 3.03 2.05 0.00 4.84 0.00 3.08 1.32 0.00 1.71 1.15 1.92 1.85 1.08 0.00 3.80 1.85 K alternative_last_exon mRpS5 chr3L + chr3L_24530716_24535509 chr3L_24530716_24531009 chr3L_24535510_24536967 chr3L_24531010_24531353 chr3L_24530497_24530715 28.26 30.43 26.09 19.23 21.43 23.81 13.21 25.93 25.86 25.00 31.25 35.42 46.43 30.00 21.74 29.63 33.33 20.00 29.41 25.00 28.57 17.65 29.63 37.50 23.53 16.00 21.74 34.78 18.18 26.09 32.26 29.41 20.00 33.33 33.33 13.64 30.00 43.75 33.33 33.33 21.74 28.26 34.62 20.83 15.38 24.14 30.00 17.86 29.82 47.62 31.03 30.00 14.29 46.15 25.00 42.11 16.00 9.76 K intron_retention caz,noncoding_24110,RI_chrX_16183147_16183258,RI_chrX_16183356_16185973 chrX + chrX_16182991_16183059 chrX_16182990_16182991;chrX_16183059_16183060 chrX_16182887_16182990;chrX_16183060_16183146 0.00 0.00 NA 1.79 NA NA 0.00 0.00 3.12 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 1.33 NA 2.15 0.00 0.00 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 1.30 0.00 0.00 1.57 1.52 0.00 0.00 0.00 1.80 NA 0.00 0.00 0.00 1.98 0.00 0.00 0.95 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon fru chr3R - chr3R_14252889_14256553;chr3R_14248905_14256553 chr3R_14243023_14256553 chr3R_14251658_14252888;chr3R_14245340_14248904 chr3R_14241177_14243022 chr3R_14256554_14256686 59.42 62.50 56.63 44.53 53.73 55.71 52.63 54.19 54.63 69.64 58.73 57.40 53.40 56.58 55.56 55.28 57.53 59.34 57.61 57.73 59.02 49.18 61.29 67.02 60.00 58.67 62.92 53.97 63.86 62.37 59.42 72.00 64.46 56.74 63.89 54.84 59.31 66.23 60.75 63.31 71.43 58.38 55.88 65.56 77.05 70.00 69.57 63.43 58.70 73.58 65.45 66.00 72.41 73.81 55.95 71.70 75.51 76.29 K alternative_donor Pp4-19C,I_chrX_20293932_20294672,RI_chrX_20293980_20294069,REI_chrX_20294004_20294672 chrX - chrX_20293980_20294672 chrX_20293980_20294069 chrX_20293904_20293979;chrX_20294673_20294772 4.44 4.27 4.08 4.85 3.45 4.04 13.89 6.38 6.71 3.39 5.26 4.40 5.88 6.94 3.67 8.25 7.14 13.25 4.60 3.43 2.70 1.79 3.98 4.13 4.44 4.44 4.92 6.80 6.90 3.12 5.38 6.00 7.04 4.88 4.35 2.94 2.96 2.40 2.40 3.86 8.93 4.38 5.17 6.87 4.55 4.81 3.57 8.04 6.08 3.80 4.17 4.29 2.67 2.15 6.42 3.33 3.12 9.26 K alternative_donor kis,RI_chr2L_231035_231947,RI_chr2L_242745_242800,I_chr2L_242926_250756 chr2L - chr2L_231035_231962 chr2L_231035_231947 chr2L_230935_231034;chr2L_231963_232047 10.53 21.15 4.41 13.01 12.96 8.47 8.79 12.96 11.36 11.94 8.47 9.09 13.43 15.38 11.70 10.20 7.25 16.67 11.29 11.76 6.35 0.72 11.86 5.88 10.53 10.77 8.96 13.21 30.14 9.88 13.04 3.23 12.57 8.45 12.28 6.67 10.62 10.81 11.11 11.86 4.00 12.42 6.25 14.29 6.45 13.89 5.71 7.38 10.62 6.25 8.82 8.57 7.50 0.00 15.38 4.35 4.35 4.48 K jcn_only_AA CG7185 chr3L - chr3L_8304813_8304873 chr3L_8304816_8304873 chr3L_8304874_8305173;chr3L_8304747_8304812 99.00 98.41 99.10 99.40 98.51 98.32 100.00 98.42 100.00 100.00 99.15 99.03 100.00 97.97 98.94 98.66 98.36 99.00 98.80 98.46 98.88 99.13 98.74 100.00 99.50 100.00 98.29 99.11 98.02 99.31 98.55 98.76 99.06 98.62 99.55 98.28 98.46 99.00 99.28 97.87 99.17 99.29 99.29 98.89 98.52 98.86 99.64 99.18 99.19 98.49 98.84 99.32 99.10 98.56 99.48 99.19 97.52 98.94 K jcn_only_AA CG18094,swm chr2L + chr2L_19494499_19494559 chr2L_19494499_19494556 chr2L_19494033_19494498;chr2L_19494560_19495735 14.29 8.33 17.11 6.82 15.38 18.52 11.69 19.81 15.87 7.69 12.77 13.57 17.57 17.86 13.04 15.12 11.76 16.67 13.85 10.97 15.00 9.47 16.84 18.57 14.29 8.05 16.87 18.03 7.14 19.23 14.63 18.75 11.11 10.17 13.21 12.24 21.92 12.70 21.05 14.18 25.00 12.59 22.22 14.29 9.76 8.93 20.69 14.29 14.97 18.06 25.00 14.89 8.16 10.81 15.62 10.71 10.64 6.90 K alternative_acceptor Eno,I_chr2L_1726650_1727645,I_chr2L_1726656_1727485,EI_chr2L_1727403_1727645,I_chr2L_1728229_1728302 chr2L - chr2L_1726656_1727645;chr2L_1726650_1727645;chr2L_1727403_1727645 chr2L_1727559_1727645 chr2L_1727646_1727735;chr2L_1726556_1726649 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor alpha-Man-I,I_chrX_10218352_10219759,I_chrX_10218390_10219759 chrX - chrX_10218390_10219823;chrX_10218390_10219708;chrX_10218390_10219846;chrX_10218390_10219759 chrX_10218390_10219816 chrX_10218290_10218389;chrX_10219847_10219859 18.34 20.00 NA 16.67 NA 28.57 16.67 16.67 15.38 NA 16.67 26.67 22.22 14.29 22.22 25.00 16.67 14.29 16.67 10.00 NA 20.00 20.00 33.33 NA 14.29 28.57 NA NA 16.67 10.00 NA 40.00 9.09 20.00 0.00 NA NA 16.67 12.50 NA 22.22 28.57 NA NA 16.67 NA 20.00 23.08 NA 16.67 20.00 20.00 NA 22.22 NA 25.00 16.67 K intron_retention wek chr2L - chr2L_15767080_15767139 chr2L_15767079_15767080;chr2L_15767139_15767140 chr2L_15766733_15767079;chr2L_15767140_15768045 0.00 5.56 2.50 5.08 0.00 0.00 2.27 3.70 0.00 NA 0.00 6.90 0.00 0.00 0.00 4.65 0.00 5.13 0.00 3.49 0.00 0.00 0.00 6.82 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 2.22 3.85 0.00 2.38 0.00 1.89 4.17 5.00 1.41 0.00 0.00 3.92 6.52 2.44 6.98 4.69 0.00 0.00 0.00 0.00 0.00 6.56 0.00 0.00 0.00 K intron_retention MED31,CG18271,I_chr3R_468381_468483,CE_chr3R_468381_468504 chr3R + chr3R_468381_468483 chr3R_468380_468381;chr3R_468483_468484 chr3R_468291_468380;chr3R_468484_468514 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 87.50 NA 93.75 91.67 NA 100.00 100.00 100.00 92.86 100.00 90.00 87.50 92.31 94.74 91.67 NA 100.00 95.45 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 93.75 84.62 100.00 100.00 95.45 100.00 100.00 91.67 80.00 100.00 96.55 92.31 95.24 95.83 100.00 84.62 100.00 94.44 100.00 90.91 100.00 94.74 96.15 K alternative_donor mRpL33,I_chrX_4216068_4216134 chrX - chrX_4216068_4216134 chrX_4216068_4216123 chrX_4215999_4216067;chrX_4216135_4216200 97.44 97.62 97.14 98.46 100.00 97.06 96.61 97.44 98.88 94.74 100.00 100.00 100.00 97.37 97.44 97.50 97.06 97.06 98.08 97.56 100.00 NA 97.83 98.55 97.44 96.15 98.21 94.44 96.43 95.00 96.08 95.45 100.00 95.52 100.00 95.00 97.06 95.65 98.33 100.00 100.00 98.51 97.30 97.78 95.45 97.96 100.00 100.00 95.83 96.23 97.73 90.48 95.45 95.83 95.74 98.44 96.43 92.31 N cassette spri,I_chrX_10404621_10469422,I_chrX_10413811_10440661,I_chrX_10417598_10440661 chrX - chrX_10417598_10440661;chrX_10413811_10440661 chrX_10413811_10438418,chrX_10417598_10438418;chrX_10438626_10440661 chrX_10438419_10438625 chrX_10413711_10413810;chrX_10440662_10440749 93.33 100.00 100.00 94.44 88.89 100.00 95.24 94.74 100.00 100.00 91.67 93.33 90.00 88.89 94.12 80.00 100.00 100.00 93.33 96.00 90.00 87.50 91.67 100.00 100.00 100.00 100.00 89.47 77.78 100.00 100.00 83.33 78.26 96.15 92.86 94.12 100.00 100.00 83.33 95.83 91.67 95.45 91.67 90.48 100.00 92.86 88.89 93.33 95.65 90.00 89.47 92.86 87.50 85.71 100.00 88.89 100.00 90.91 K jcn_only_AA Ssadh,RI_chr3R_21451890_21451963,I_chr3R_21452371_21452464,I_chr3R_21452407_21452453 chr3R - chr3R_21452368_21452453;chr3R_21452386_21452453 chr3R_21452371_21452453 chr3R_21452454_21452553;chr3R_21452307_21452367 22.73 4.76 40.62 30.00 NA NA 27.59 23.33 28.57 NA 19.05 27.50 19.05 16.67 20.00 31.25 NA 22.73 NA 26.19 NA 22.50 24.24 18.52 NA NA 18.92 14.71 NA 22.86 22.73 NA NA 22.50 15.00 26.67 28.57 27.78 18.75 31.43 NA 31.58 NA 30.43 NA 13.51 15.15 14.29 14.71 32.00 23.26 NA 16.00 17.86 16.00 NA 25.00 19.23 K cassette CG12065,CE_chrX_8469528_8477573 chrX + chrX_8480279_8481290 chrX_8480279_8480584;chrX_8480642_8481290 chrX_8480585_8480641 chrX_8480019_8480278;chrX_8481291_8481558 3.04 2.49 1.53 14.92 2.83 1.75 1.47 4.39 1.77 3.78 2.13 19.64 3.36 2.75 0.76 0.94 5.21 2.48 2.92 10.12 1.12 6.94 3.09 4.10 6.49 2.78 3.05 11.74 3.65 2.40 1.76 3.60 5.20 2.21 2.95 9.35 3.04 3.96 2.36 3.90 4.82 2.39 2.63 5.65 7.82 2.67 2.51 4.93 1.61 3.58 3.39 5.47 1.13 2.83 3.59 3.15 1.57 1.38 K mutually_exclusive CG7766,I_chrX_8993495_8994545,I_chrX_8991338_8991387 chrX - chrX_8992447_8994545,chrX_8994691_8995128 chrX_8992447_8993346,chrX_8993495_8995128 chrX_8994546_8994690 chrX_8993347_8993494 chrX_8992117_8992446;chrX_8995129_8995452 85.15 82.69 84.48 92.00 84.62 86.96 87.50 87.67 88.24 83.78 87.10 83.52 98.21 84.00 85.48 90.67 80.43 82.46 80.00 85.00 83.78 95.40 77.23 80.23 87.50 89.80 82.05 97.14 79.37 92.31 89.86 89.47 90.09 85.06 83.64 91.36 82.80 75.86 94.59 93.00 96.61 85.15 89.74 77.53 84.48 83.33 78.85 92.22 78.26 88.73 81.40 86.54 75.00 78.26 87.67 85.71 73.44 85.53 K intron_retention CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25318474_25319163 chr3R_25318473_25318474;chr3R_25319163_25319164 chr3R_25318374_25318473;chr3R_25319164_25319224 78.95 84.62 85.71 83.33 78.95 80.95 86.96 68.75 72.22 66.67 87.50 78.57 63.64 90.91 72.00 80.00 83.33 84.62 68.42 81.82 85.19 63.33 87.50 78.38 85.19 86.67 75.00 80.00 77.27 75.00 58.82 82.35 69.23 82.61 75.00 75.00 69.57 66.67 58.33 86.67 80.00 83.33 92.86 65.00 81.82 82.61 65.00 100.00 83.87 70.37 84.62 76.47 77.27 75.00 78.95 76.67 76.47 69.23 K alternative_donor EI_chr3R_11090999_11091648,Oscp,I_chr3R_11091413_11092154 chr3R + chr3R_11090999_11091648 chr3R_11091413_11091648 chr3R_11091649_11091748;chr3R_11090899_11090998 97.96 98.08 100.00 98.57 100.00 97.78 100.00 100.00 100.00 97.83 98.51 97.62 100.00 98.04 100.00 100.00 100.00 100.00 98.25 99.12 96.49 95.24 93.33 98.25 96.88 97.92 95.24 100.00 97.50 88.46 91.67 97.73 97.67 100.00 100.00 95.45 99.07 97.96 95.51 100.00 97.14 99.19 97.67 93.33 95.24 85.11 96.30 97.56 98.48 98.15 89.74 94.74 97.44 96.77 100.00 98.21 99.21 95.65 K jcn_only_AD CG1640,RI_chrX_13265127_13267895,I_chrX_13265553_13267895,I_chrX_13265618_13267895,RI_chrX_13266680_13267895,RI_chrX_13267529_13267895,I_chrX_13271541_13271890 chrX + chrX_13265560_13267895;chrX_13265401_13267895;chrX_13265094_13267895;chrX_13265295_13267895 chrX_13265248_13267895 chrX_13267896_13267973;chrX_13265065_13265093 2.08 7.41 3.08 1.33 1.75 2.22 3.64 2.74 0.00 2.86 4.44 1.32 0.00 6.67 5.66 2.22 2.27 2.94 3.70 3.26 4.76 0.00 1.32 3.64 0.00 4.88 1.59 3.23 4.84 4.92 1.67 0.00 1.11 1.43 0.00 0.00 5.81 1.49 4.00 1.01 0.00 1.20 0.00 2.08 0.00 2.94 0.00 3.08 1.11 0.00 3.03 2.27 0.00 0.00 0.00 4.88 2.70 1.83 K alternative_acceptor CG12945,I_chr3R_5615604_5615859,I_chr3R_5615807_5615858,RI_chr3R_5616467_5616560 chr3R - chr3R_5616467_5616560 chr3R_5616494_5616560 chr3R_5616561_5616629;chr3R_5616402_5616466 87.88 85.11 82.50 88.06 87.10 96.30 90.62 86.57 87.50 82.05 85.29 91.43 92.59 79.17 92.11 86.00 86.96 88.24 87.88 80.20 88.89 87.23 90.67 96.30 100.00 85.71 91.76 86.79 88.00 86.00 85.71 95.65 82.81 83.33 83.33 60.71 86.57 86.54 92.65 89.55 84.85 90.36 84.62 92.98 96.15 83.67 92.11 87.10 93.33 90.62 91.23 91.67 97.06 88.57 87.88 89.74 90.24 87.50 K jcn_only_AA VhaPPA1-1,I_chr3R_10728645_10728933 chr3R - chr3R_10729610_10729672 chr3R_10729614_10729672 chr3R_10729673_10729699;chr3R_10729545_10729609 97.78 97.64 97.52 96.77 97.07 98.64 97.74 97.64 97.67 97.71 97.96 96.26 97.33 96.96 97.52 97.96 98.39 97.44 98.19 96.97 97.94 98.39 98.08 98.32 97.51 97.62 96.61 97.92 98.62 97.18 96.89 98.08 97.90 98.43 98.73 96.17 97.78 98.11 97.35 97.62 98.06 98.17 98.11 96.81 97.49 98.36 98.80 98.43 97.08 97.91 97.85 99.27 97.12 96.38 97.91 98.22 97.23 98.35 K intron_retention CG4630,RI_chr2R_9103472_9103634,I_chr2R_9103765_9103852,I_chr2R_9103956_9104108,RI_chr2R_9104206_9104265 chr2R - chr2R_9103609_9103663 chr2R_9103608_9103609;chr2R_9103663_9103664 chr2R_9103549_9103608;chr2R_9103664_9103734 9.76 14.29 0.00 12.50 NA NA 26.32 0.00 0.00 0.00 NA 4.76 NA NA NA NA NA NA NA 14.29 NA 9.09 21.05 6.06 22.22 NA 14.29 10.53 19.05 0.00 10.53 21.43 0.00 5.56 9.52 15.38 10.00 0.00 5.56 3.45 35.71 5.26 NA 10.81 0.00 15.00 0.00 12.50 5.56 12.00 NA 16.67 NA 4.35 NA 4.76 14.29 NA K intron_retention CG1418,RI_chr2R_5852050_5852138 chr2R - chr2R_5852087_5852138 chr2R_5852086_5852087;chr2R_5852138_5852139 chr2R_5852030_5852086;chr2R_5852139_5852207 0.00 0.00 1.67 4.48 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 2.13 0.00 1.41 0.00 4.44 0.00 2.34 0.00 0.00 3.12 0.00 0.00 0.00 7.46 1.79 0.00 0.00 1.82 0.85 0.00 0.00 0.00 0.00 0.00 0.00 1.43 1.18 0.00 0.00 0.00 2.60 0.00 2.14 0.00 0.59 1.19 0.00 4.05 0.00 0.00 0.00 2.38 0.00 2.44 0.00 K cassette CG7956 chr3R + chr3R_17350372_17351248 chr3R_17350372_17350806;chr3R_17351141_17351248 chr3R_17350807_17351140 chr3R_17350312_17350371;chr3R_17351249_17351485 11.96 12.33 6.25 5.10 7.94 7.89 8.49 7.81 10.76 11.36 12.96 11.93 10.34 8.22 9.18 11.96 12.12 12.12 11.49 9.25 10.00 3.17 13.48 13.25 17.95 11.54 10.91 16.28 25.71 8.82 21.54 16.33 14.77 10.71 15.09 15.56 15.79 12.50 15.62 10.08 12.07 10.97 12.12 15.38 16.00 14.94 8.93 16.49 9.38 16.67 14.94 14.29 19.23 11.76 7.69 12.00 11.86 11.11 K intron_retention slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,I_chr2R_20289332_20290093 chr2R - chr2R_20282799_20283565 chr2R_20282798_20282799;chr2R_20283565_20283566 chr2R_20281818_20282798;chr2R_20283566_20283698 7.55 9.76 8.93 23.40 18.60 13.11 18.57 15.00 10.28 5.97 10.00 10.16 13.16 12.70 10.45 15.38 7.94 10.20 13.43 10.66 11.36 7.55 7.14 3.41 8.00 8.00 6.49 7.04 4.81 4.81 7.27 8.86 1.11 14.77 6.67 1.92 1.43 0.00 5.61 9.92 4.44 10.37 10.53 5.97 0.00 3.39 6.15 3.95 16.67 5.17 6.98 4.35 3.61 3.51 12.35 5.26 4.41 4.19 K alternative_acceptor CG32549,I_chrX_18286136_18286367,I_chrX_18286289_18286367,RI_chrX_18301919_18303082 chrX - chrX_18286136_18286367;chrX_18286194_18286367 chrX_18286289_18286367 chrX_18286368_18286467;chrX_18286073_18286135 0.41 0.00 0.00 0.65 0.00 0.00 0.64 0.59 0.45 1.30 1.28 0.59 0.00 1.10 0.00 0.00 0.00 0.00 0.90 0.89 0.00 0.34 0.47 0.00 0.00 0.00 1.16 0.48 2.34 0.83 1.77 1.25 0.53 0.00 0.00 2.80 0.00 0.00 0.00 1.90 0.00 0.00 1.12 0.77 0.93 0.00 0.00 0.00 0.53 0.41 0.00 0.00 1.03 0.78 0.88 0.79 0.00 0.00 K intron_retention CG15814,I_chrX_17743744_17743940 chrX - chrX_17743844_17743940 chrX_17743843_17743844;chrX_17743940_17743941 chrX_17743809_17743843;chrX_17743941_17744040 1.04 0.00 2.17 2.13 0.00 3.30 0.00 1.40 0.75 0.00 0.00 3.05 0.00 1.15 1.06 3.31 0.00 0.00 0.00 1.57 0.00 0.85 0.00 1.06 0.00 2.90 3.77 9.52 2.27 2.22 3.81 1.74 2.98 2.82 0.93 1.61 0.29 0.59 0.86 0.66 2.70 1.38 3.77 0.00 1.04 0.93 1.42 1.37 2.35 0.00 1.11 1.83 0.00 0.00 0.89 0.61 0.00 0.66 K intron_retention CG17333 chrX + chrX_10741672_10741802 chrX_10741671_10741672;chrX_10741802_10741803 chrX_10741478_10741671;chrX_10741803_10742278 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG14476,I_chrX_21474758_21476200,I_chrX_21475620_21475965 chrX - chrX_21475620_21476200;chrX_21475620_21476178 chrX_21475620_21476104 chrX_21475520_21475619;chrX_21476201_21476209 2.00 0.00 2.00 2.08 0.00 0.00 4.40 0.81 2.68 0.00 2.38 0.82 2.06 1.59 3.12 2.41 3.03 2.56 2.60 2.41 1.96 8.57 1.85 0.00 3.57 3.12 0.00 4.17 5.00 NA 1.49 NA NA 1.22 4.55 4.55 0.00 3.70 0.00 2.70 NA 1.48 2.00 3.03 NA 0.00 0.00 NA 2.50 0.00 3.92 0.00 0.00 0.00 1.14 0.00 3.85 0.00 K jcn_only_AA CG7630,I_chr3L_17418741_17418811,I_chr3L_17419180_17419283 chr3L + chr3L_17419180_17419283 chr3L_17419180_17419238 chr3L_17419111_17419179;chr3L_17419284_17419348 100.00 99.86 99.83 100.00 100.00 99.84 100.00 99.89 100.00 100.00 100.00 99.82 100.00 100.00 100.00 100.00 100.00 100.00 99.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.84 100.00 99.67 100.00 100.00 99.75 100.00 100.00 100.00 100.00 99.57 100.00 99.78 99.86 100.00 100.00 99.81 99.82 100.00 99.73 99.76 100.00 99.87 100.00 99.70 100.00 99.79 99.87 100.00 99.57 100.00 100.00 K intron_retention ERR,I_chr3L_8178143_8178448 chr3L - chr3L_8178143_8179278 chr3L_8178142_8178143;chr3L_8179278_8179279 chr3L_8178043_8178142;chr3L_8179279_8179763 0.00 0.00 0.00 0.00 0.00 0.00 5.26 3.92 7.02 0.00 0.00 2.00 0.00 0.00 0.00 6.25 0.00 3.70 0.00 7.69 0.00 5.26 0.00 0.00 0.00 3.12 3.92 9.09 0.00 0.00 6.90 0.00 3.33 2.04 0.00 0.00 0.00 0.00 5.13 3.85 12.00 8.00 0.00 0.00 7.69 6.67 4.76 0.00 3.51 0.00 0.00 0.00 7.14 12.50 0.00 0.00 0.00 0.00 K cassette Nc73EF,F_chr3L_16952838_16955936,CE_chr3L_16952842_16955936,I_chr3L_16952985_16955434,I_chr3L_16953768_16954599 chr3L + chr3L_16954703_16955434 chr3L_16954703_16954907;chr3L_16954914_16955434 chr3L_16954908_16954913 chr3L_16954600_16954702;chr3L_16955435_16955513 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K alternative_donor tlk chrX + chrX_3614138_3615408 chrX_3614356_3615408 chrX_3615409_3615543;chrX_3614125_3614137 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 87.50 NA 100.00 NA 100.00 NA 85.71 100.00 NA 100.00 100.00 NA NA NA NA NA NA K intron_retention Trn-SR chr2L + chr2L_2762394_2762462 chr2L_2762393_2762394;chr2L_2762462_2762463 chr2L_2761724_2762393;chr2L_2762463_2763088 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 93.33 100.00 100.00 100.00 94.12 94.74 100.00 100.00 100.00 94.74 100.00 100.00 92.86 100.00 100.00 94.44 100.00 100.00 100.00 95.24 100.00 97.22 100.00 100.00 96.30 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 97.30 100.00 100.00 92.86 100.00 100.00 95.65 95.24 100.00 95.83 K jcn_only_AD CG1399,I_chr2R_3574133_3574191 chr2R - chr2R_3565240_3565502;chr2R_3565240_3565323;chr2R_3565240_3566074;chr2R_3565240_3565403;chr2R_3565240_3565374 chr2R_3565240_3565310 chr2R_3564840_3565239 16.13 9.09 15.38 20.00 32.26 21.88 29.23 4.35 31.82 24.49 18.87 19.51 28.57 16.13 16.22 0.00 30.00 8.33 20.51 16.67 15.09 33.33 20.00 2.00 14.81 26.92 13.33 14.29 7.14 11.86 8.77 11.11 20.29 25.00 15.79 11.54 15.09 27.27 13.04 31.25 25.42 27.27 18.52 8.89 7.69 15.25 23.81 5.88 10.91 26.09 14.75 10.26 18.52 7.32 20.45 12.50 19.05 5.41 K intron_retention spin,I_chr2R_12013288_12013847 chr2R + chr2R_12020141_12020333 chr2R_12020140_12020141;chr2R_12020333_12020334 chr2R_12020064_12020140;chr2R_12020334_12020372 22.58 20.00 32.14 43.06 24.14 32.00 19.44 21.92 28.81 15.38 22.22 39.53 16.67 27.27 16.28 35.29 31.03 23.81 29.63 18.92 22.58 51.43 25.00 28.57 31.03 20.00 20.69 20.00 17.14 24.24 29.03 31.82 37.50 30.00 30.43 27.27 17.81 19.44 19.23 22.92 29.03 20.69 45.83 20.83 18.52 16.67 13.79 37.14 22.45 23.26 22.45 16.67 12.12 12.90 29.73 11.76 15.69 8.33 K alternative_acceptor Idh,I_chr3L_8351006_8351949,I_chr3L_8351036_8351655 chr3L - chr3L_8351006_8351655 chr3L_8351036_8351655 chr3L_8351656_8351715;chr3L_8350936_8351005 4.82 6.98 4.55 6.90 4.76 4.17 13.33 4.76 6.15 19.05 0.00 5.71 5.00 5.88 3.33 4.35 NA 4.76 0.00 5.80 0.00 17.39 4.55 4.88 7.50 3.85 6.98 15.15 4.55 0.00 7.69 4.76 5.26 2.78 5.26 13.16 0.00 0.00 2.17 6.67 5.56 5.26 0.00 0.00 0.00 14.29 0.00 4.17 9.30 4.76 6.98 0.00 9.68 5.13 3.45 9.68 0.00 6.25 K alternative_donor par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350149_15351814;chr2R_15350285_15351814;chr2R_15350437_15351814 chr2R_15350905_15351814 chr2R_15351815_15351914;chr2R_15350068_15350148 33.33 57.14 50.00 25.00 33.33 40.00 33.33 19.05 45.45 33.33 40.00 35.71 50.00 40.00 33.33 40.00 44.44 16.67 40.00 47.62 14.29 40.00 33.33 27.27 20.00 54.55 28.57 40.00 40.00 45.45 21.43 50.00 57.14 27.27 28.57 42.86 20.00 33.33 40.00 35.71 33.33 35.29 30.00 33.33 NA 50.00 20.00 25.00 25.93 33.33 28.57 16.67 40.00 25.00 35.71 33.33 14.29 40.00 K jcn_only_AA CG6043,I_chr2L_13267973_13268086 chr2L + chr2L_13274377_13274651;chr2L_13274377_13274642 chr2L_13274377_13274690 chr2L_13274310_13274376;chr2L_13274691_13274770 48.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 48.00 NA NA NA NA NA NA NA NA K intron_retention dwg,RI_chrX_2622297_2622355,RI_chrX_2622297_2622430,RI_chrX_2622435_2622577,RI_chrX_2627170_2627263 chrX + chrX_2622297_2622577 chrX_2622296_2622297;chrX_2622577_2622578 chrX_2622197_2622296;chrX_2622578_2622677 20.83 5.88 11.76 28.57 15.00 18.18 47.83 20.83 22.64 16.67 10.71 12.90 27.27 12.50 21.05 23.26 26.09 23.81 20.00 21.05 22.73 68.18 18.37 29.73 19.35 25.93 26.67 16.67 17.50 15.15 43.55 17.24 28.26 31.25 28.57 35.71 17.39 12.00 23.08 20.69 22.86 18.97 14.81 16.67 18.18 20.00 31.71 14.81 17.86 21.05 26.92 35.29 13.16 23.08 21.21 21.62 14.29 8.93 K alternative_acceptor REG chrX + chrX_13106426_13106496 chrX_13106426_13106482 chrX_13106389_13106425;chrX_13106497_13106991 8.59 9.48 9.14 5.88 11.03 9.01 9.23 6.27 7.44 9.65 6.53 8.20 7.75 8.21 7.18 7.87 9.40 6.90 8.59 6.29 7.14 15.79 9.22 7.28 8.94 9.32 9.38 10.08 26.09 14.49 10.00 8.54 10.29 6.46 6.90 17.31 7.52 7.50 7.41 9.14 15.15 7.53 7.87 7.69 3.85 9.20 8.20 10.42 7.55 7.53 12.06 10.60 8.09 10.29 9.73 9.77 7.19 10.00 K alternative_acceptor CG2004,I_chrX_8608130_8608508,RI_chrX_8608147_8608508,I_chrX_8608169_8608438 chrX - chrX_8608130_8608508;chrX_8608147_8608508;chrX_8608150_8608508 chrX_8608169_8608508 chrX_8608509_8608538;chrX_8608069_8608129 95.00 90.48 100.00 100.00 85.71 93.75 72.00 92.86 93.02 84.21 100.00 92.11 100.00 85.71 86.96 91.18 100.00 100.00 95.00 97.56 100.00 94.12 93.10 90.00 100.00 100.00 93.33 87.80 86.96 92.31 95.00 100.00 90.91 90.32 95.45 100.00 100.00 86.96 96.55 100.00 100.00 90.70 100.00 100.00 95.65 93.55 100.00 90.91 95.45 97.14 92.86 93.33 93.33 100.00 92.00 100.00 96.30 100.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2389073;chrX_2389272_2389644;chrX_2389762_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2393243 chrX_2389074_2389271;chrX_2389645_2389761;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2393244_2393291 0.00 NA NA NA NA NA NA NA NA NA NA 2.70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention gry,I_chr3L_3202203_3209859 chr3L + chr3L_3200174_3200227 chr3L_3200173_3200174;chr3L_3200227_3200228 chr3L_3199254_3200173;chr3L_3200228_3200458 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 9.30 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.68 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG41099,I_chr3RHet_1688173_1688235,I_chr3RHet_1688505_1705884,RI_chr3RHet_1703294_1705884 chr3RHet - chr3RHet_1688331_1688378 chr3RHet_1688330_1688331;chr3RHet_1688378_1688379 chr3RHet_1688236_1688330;chr3RHet_1688379_1688500 16.63 NA NA 26.09 NA NA 15.62 31.03 22.58 NA NA 17.65 NA NA NA 12.00 NA NA 12.50 NA NA NA NA NA NA NA 29.41 NA NA NA 11.11 NA NA 12.50 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 21.21 NA NA NA NA NA NA NA NA NA K intron_retention CG30492,C_chr2R_3522706_3523025,CG30494,RI_chr2R_3536203_3536977,I_chr2R_3543397_3543455 chr2R + chr2R_3528123_3528336 chr2R_3528122_3528123;chr2R_3528336_3528337 chr2R_3527622_3528122;chr2R_3528337_3528398 66.67 NA NA NA NA NA NA NA 64.29 NA NA 75.00 NA NA NA NA NA NA NA 66.67 NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 63.64 NA NA NA NA NA NA NA NA NA K multi_cassette Vha100-1,I_chr3R_24958227_24960770,RI_chr3R_24959152_24959582,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24958227_24960770 chr3R_24958227_24958993;chr3R_24959152_24959582;chr3R_24959684_24960770 chr3R_24958994_24959151;chr3R_24959583_24959683 chr3R_24958127_24958226;chr3R_24960771_24960870 13.25 NA NA NA NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA 11.11 NA NA NA NA NA NA 20.00 NA 9.52 NA NA NA NA NA 15.38 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG7837 chr3R - chr3R_25624724_25624829 chr3R_25624723_25624724;chr3R_25624829_25624830 chr3R_25624631_25624723;chr3R_25624830_25625071 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 7.89 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA NA 0.00 2.56 0.00 0.00 0.00 NA NA NA NA 0.00 NA N alternative_donor Pvf2 chr2L - chr2L_7083729_7084481 chr2L_7083729_7083829 chr2L_7083186_7083728;chr2L_7084482_7084625 31.82 33.33 25.00 28.12 22.22 13.79 54.55 24.62 31.58 38.46 37.50 20.59 54.55 25.53 20.00 28.41 30.00 35.71 24.39 21.05 25.00 50.00 45.16 45.45 50.00 22.73 46.67 56.52 50.00 42.86 28.95 31.82 28.57 18.75 32.43 54.17 41.67 46.15 28.57 29.73 35.00 23.08 20.00 37.14 30.00 19.15 37.50 37.50 20.27 47.37 31.25 41.67 33.33 41.67 15.15 40.00 37.50 27.27 K jcn_only_AA CG18213 chr3R - chr3R_12865006_12865068 chr3R_12865009_12865068 chr3R_12865069_12865228;chr3R_12864982_12865005 95.12 NA NA 100.00 NA NA NA 94.12 90.91 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 95.24 NA NA NA NA NA NA 95.00 NA NA NA NA NA NA NA 95.24 NA 92.31 NA NA NA 95.45 89.29 NA NA NA NA NA NA NA NA NA K intron_retention NTPase,I_chr2L_2882834_2884796 chr2L - chr2L_2882834_2884992 chr2L_2882833_2882834;chr2L_2884992_2884993 chr2L_2882734_2882833;chr2L_2884993_2885199 1.47 0.00 0.00 1.95 0.00 1.49 1.63 2.39 1.09 0.00 3.25 2.15 2.41 2.73 0.73 0.00 1.71 1.92 1.48 1.89 1.72 2.50 0.00 1.56 1.89 2.74 1.35 2.70 6.67 1.01 3.02 0.00 0.62 0.99 1.83 0.00 0.00 2.02 0.74 1.04 2.56 1.25 1.03 1.76 1.43 1.22 0.00 1.56 1.49 1.50 0.00 0.00 0.00 1.47 0.65 2.35 0.00 0.00 K alternative_donor for,I_chr2L_3627621_3631522 chr2L - chr2L_3627636_3631976;chr2L_3627636_3631804;chr2L_3627636_3631962 chr2L_3627636_3631522 chr2L_3626337_3627635;chr2L_3631977_3632151 83.34 NA NA 50.00 NA NA NA 100.00 60.00 NA NA 50.00 NA NA NA 100.00 100.00 NA 100.00 33.33 NA 60.00 100.00 66.67 NA NA 100.00 NA NA 66.67 50.00 NA 50.00 50.00 60.00 NA NA NA NA 100.00 NA 100.00 NA NA NA NA 100.00 66.67 100.00 100.00 100.00 NA NA NA NA NA NA NA K intron_retention CG14868,CG6136 chr3R - chr3R_11196289_11196339 chr3R_11196288_11196289;chr3R_11196339_11196340 chr3R_11196041_11196288;chr3R_11196340_11197898 100.00 90.91 NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA 100.00 NA 88.89 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA NA 90.00 NA 94.74 NA 93.33 100.00 NA NA 100.00 NA NA NA K intron_retention CG18088 chr2L + chr2L_8968010_8968078 chr2L_8968009_8968010;chr2L_8968078_8968079 chr2L_8967524_8968009;chr2L_8968079_8968376 25.00 NA NA 20.83 NA NA 17.65 15.38 24.24 NA NA 18.18 25.00 NA NA 29.41 NA NA 27.27 32.00 NA NA NA NA NA NA 41.67 NA NA NA NA NA NA 41.18 NA NA NA NA NA NA NA 15.00 NA 53.85 NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor l(1)G0269,I_chrX_21192541_21192931 chrX - chrX_21193181_21194157 chrX_21193190_21194157 chrX_21194158_21194468;chrX_21192932_21193180 71.79 65.62 61.11 58.46 74.29 75.00 54.39 68.57 78.75 73.68 74.07 72.31 73.81 62.79 79.07 67.21 82.50 65.12 61.54 74.36 82.35 66.67 67.92 81.40 52.38 48.84 75.00 91.67 58.82 70.37 76.92 62.50 94.12 70.27 62.07 46.43 67.86 73.91 76.47 62.50 43.75 74.12 71.79 75.00 80.95 75.76 94.74 63.33 71.95 80.95 68.75 68.18 76.47 76.92 59.38 70.00 76.00 60.00 K jcn_only_AA CG5521 chr3R + chr3R_22795518_22796349;chr3R_22795518_22796373 chr3R_22795518_22796048 chr3R_22795407_22795517 0.00 NA 5.41 5.71 0.00 NA 0.00 5.71 3.39 0.00 NA 9.76 8.33 3.03 2.50 0.00 0.00 0.00 2.56 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 5.41 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 3.03 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K alternative_donor RpL5,I_chr2L_22428750_22428846 chr2L - chr2L_22429111_22429352 chr2L_22429111_22429268 chr2L_22428847_22429110;chr2L_22429353_22429396 98.29 98.40 98.72 98.49 98.45 98.96 99.46 96.34 99.35 96.99 98.75 99.26 99.39 99.13 95.82 99.52 96.96 98.40 97.17 98.78 98.29 94.32 99.45 99.62 99.49 95.69 99.06 65.06 63.32 88.84 92.86 73.38 69.15 96.99 94.66 90.16 99.87 99.91 99.83 35.42 50.26 94.57 97.80 74.16 79.97 74.83 99.41 57.73 95.93 99.75 99.73 99.76 86.74 98.83 96.47 99.08 99.80 86.92 K jcn_only_AD Nacalpha,I_chr2R_8648027_8648303 chr2R - chr2R_8648027_8648305;chr2R_8648027_8648309 chr2R_8648027_8648231 chr2R_8647927_8648026;chr2R_8648310_8648314 72.73 89.13 70.27 73.33 41.86 65.38 79.49 59.46 80.90 NA 72.41 83.61 83.72 92.86 76.27 87.14 75.00 58.33 77.27 76.32 72.73 65.52 84.21 65.00 NA 72.73 80.00 16.48 78.38 71.43 81.36 75.00 52.94 73.02 72.00 NA 82.76 88.00 72.73 15.87 58.62 75.32 69.44 16.13 60.47 71.93 77.50 72.22 68.67 63.16 87.18 86.05 22.22 79.07 69.23 75.47 59.42 49.30 K jcn_only_AA TepIV,EI_chr2L_19548696_19549582 chr2L + chr2L_19553916_19553978;chr2L_19553916_19553975 chr2L_19553916_19553969 chr2L_19553362_19553915;chr2L_19553979_19556092 3.88 3.56 6.70 4.78 0.00 4.58 4.44 2.94 5.53 4.41 4.35 3.18 4.48 2.62 4.41 2.77 6.11 4.43 3.18 4.49 5.46 3.60 2.05 6.15 2.31 6.10 2.59 5.40 2.79 3.08 3.83 4.04 3.08 4.65 3.95 3.05 5.79 0.68 2.95 3.88 4.45 3.39 2.37 3.77 4.11 3.68 2.86 3.89 4.30 3.45 4.31 5.39 2.55 3.68 2.74 5.85 2.65 4.55 K intron_retention CG33051,CG33052 chr3L - chr3L_17419957_17420025 chr3L_17419956_17419957;chr3L_17420025_17420026 chr3L_17419828_17419956;chr3L_17420026_17420282 0.00 0.00 NA 7.14 NA NA 7.69 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 4.76 NA 0.00 0.00 3.23 0.00 0.00 4.76 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention GATAd chr2L + chr2L_10336884_10336944 chr2L_10336883_10336884;chr2L_10336944_10336945 chr2L_10336022_10336883;chr2L_10336945_10337072 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 0.00 13.04 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.13 0.00 0.00 NA 0.00 0.00 NA 5.56 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA K alternative_donor CG1103 chr3R + chr3R_164971_165034 chr3R_164975_165034 chr3R_165035_165640;chr3R_164766_164970 97.37 97.73 97.50 100.00 97.56 97.73 95.31 98.57 97.85 100.00 97.06 98.59 100.00 100.00 95.12 100.00 100.00 95.24 97.22 96.55 100.00 93.62 100.00 97.87 95.83 93.18 100.00 100.00 90.62 96.67 94.74 97.14 100.00 96.72 96.15 100.00 94.12 100.00 98.33 98.18 96.55 95.51 96.55 95.45 95.56 94.12 96.77 100.00 100.00 97.78 97.37 96.55 96.55 96.55 97.96 97.14 96.08 98.41 K alternative_donor wdp,I_chr2R_18188515_18198588 chr2R - chr2R_18195762_18198647 chr2R_18195762_18198588 chr2R_18195713_18195761;chr2R_18198648_18198688 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG15173,RI_chr2L_19044304_19044369 chr2L - chr2L_19043884_19043931;chr2L_19043884_19043935 chr2L_19043884_19043945 chr2L_19043535_19043883;chr2L_19043946_19044083 0.00 NA NA 5.00 NA NA NA NA NA NA NA 4.55 NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA 0.00 NA NA NA NA 3.33 NA NA NA NA NA NA NA NA NA NA 3.70 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 0.00 NA K jcn_only_AA cnn,I_chr2R_9333096_9336812,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9330664_9331932;chr2R_9330634_9331932 chr2R_9331848_9331932 chr2R_9331933_9332199 0.00 0.00 1.49 0.00 0.00 1.41 2.11 1.16 0.00 0.00 0.00 0.00 0.00 0.00 1.37 3.23 0.00 2.27 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.91 0.00 0.00 0.00 0.00 0.82 0.00 0.00 1.79 0.00 0.00 0.00 0.00 1.85 0.00 1.82 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_155591_155927,I_chr4_157014_157316,RI_chr4_157014_157504,I_chr4_157794_157864 chr4 + chr4_154340_155296 chr4_154339_154340;chr4_155296_155297 chr4_154254_154339;chr4_155297_155320 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 96.97 NA 88.89 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 91.67 NA NA NA NA 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA K intron_retention wdn chr3R - chr3R_24635732_24635791 chr3R_24635731_24635732;chr3R_24635791_24635792 chr3R_24634527_24635731;chr3R_24635792_24637060 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG16791 chr3R - chr3R_17160491_17163398 chr3R_17160490_17160491;chr3R_17163398_17163399 chr3R_17160426_17160490;chr3R_17163399_17163498 0.00 0.00 0.00 3.77 0.00 0.00 4.55 0.00 6.00 0.00 0.00 0.00 9.09 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 7.41 0.00 0.00 NA 0.00 4.76 NA 12.50 0.00 0.00 0.00 0.00 1.82 0.00 2.94 0.00 0.00 0.00 2.63 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 K intron_retention Adar,I_chrX_1668256_1682696,I_chrX_1674594_1674717 chrX + chrX_1672594_1672644 chrX_1672593_1672594;chrX_1672644_1672645 chrX_1672476_1672593;chrX_1672645_1672732 76.47 80.00 92.31 90.91 NA 87.50 78.26 74.07 77.42 NA 100.00 87.50 40.00 66.67 76.92 81.82 71.43 NA 76.47 60.00 90.91 NA 64.71 56.25 63.64 77.78 92.31 60.00 NA 46.15 71.43 NA NA 77.78 NA NA NA NA NA 50.00 NA 65.00 81.82 50.00 NA 66.67 NA 78.95 57.14 NA 81.25 60.00 NA NA NA NA NA NA K intron_retention Myo31DF,I_chr2L_10506249_10506683,I_chr2L_10506446_10506542 chr2L - chr2L_10506249_10506683 chr2L_10506248_10506249;chr2L_10506683_10506684 chr2L_10506149_10506248;chr2L_10506684_10506780 91.67 78.57 94.12 100.00 NA 88.89 80.00 92.31 88.46 89.47 92.86 100.00 94.74 76.47 91.67 95.45 88.89 90.00 94.12 83.33 92.31 73.68 92.00 75.00 94.44 66.67 84.62 93.33 83.33 91.67 90.91 91.67 73.68 90.00 95.24 100.00 94.12 90.00 90.91 82.50 80.00 95.65 85.71 91.30 100.00 89.47 100.00 94.12 95.45 94.12 90.32 100.00 NA NA 93.75 83.33 91.67 92.86 K alternative_donor ligatin,Slbp chr3R - chr3R_24976954_24977016 chr3R_24976954_24977011 chr3R_24975609_24976953;chr3R_24977017_24977494 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 94.74 100.00 96.55 100.00 98.59 100.00 96.30 97.22 98.18 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 98.55 100.00 100.00 96.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 K intron_retention CG12384,I_chr2R_7245925_7246462,RI_chr2R_7245930_7246231,RI_chr2R_7245930_7246259 chr2R - chr2R_7245930_7246462 chr2R_7245929_7245930;chr2R_7246462_7246463 chr2R_7245841_7245929;chr2R_7246463_7246526 2.11 1.07 3.21 4.42 2.00 1.80 4.67 2.08 3.33 0.00 3.77 2.45 3.88 1.64 1.78 3.31 3.96 2.30 3.91 2.26 1.75 7.25 2.37 1.99 1.91 3.38 4.17 3.31 2.89 0.94 14.86 0.99 0.50 3.59 2.41 4.19 0.83 0.00 1.71 1.52 2.74 2.75 1.75 1.75 1.11 2.11 1.48 1.35 2.49 2.41 2.11 2.26 1.53 2.02 1.53 1.50 2.16 0.70 K intron_retention CG8920 chr2R + chr2R_16211917_16212002 chr2R_16211916_16211917;chr2R_16212002_16212003 chr2R_16211798_16211916;chr2R_16212003_16212038 19.64 NA NA NA NA NA 25.00 NA 25.00 NA NA NA NA NA NA NA NA NA NA 25.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Atg8a,I_chrX_10659836_10659921,RI_chrX_10659836_10660127,I_chrX_10659836_10660362,I_chrX_10659836_10660406,I_chrX_10659836_10661133,E_chrX_10659836_10661147,I_chrX_10659836_10661185,noncoding_22965 chrX - chrX_10659836_10662013 chrX_10659835_10659836;chrX_10662013_10662014 chrX_10659736_10659835;chrX_10662014_10662111 0.00 0.00 0.00 0.15 0.00 0.00 0.24 0.42 0.39 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.21 0.28 0.00 0.66 0.30 0.00 0.27 0.00 0.54 0.43 0.00 0.28 0.22 0.39 0.59 0.00 0.00 0.00 0.15 0.00 0.25 0.00 0.00 0.12 0.00 0.00 0.33 0.00 0.00 0.00 0.30 0.33 0.19 0.27 0.00 0.52 0.00 0.00 0.22 0.00 K alternative_acceptor lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22817840_22817891;chr2L_22817840_22817943 chr2L_22817840_22817968 chr2L_22817740_22817839;chr2L_22817969_22817982 0.00 0.00 1.85 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 2.56 0.00 2.17 0.00 0.00 1.59 0.00 0.93 0.00 0.00 5.56 2.70 2.94 2.38 0.00 2.86 0.00 2.50 0.00 0.00 1.49 0.00 0.00 0.00 K jcn_only_AD CG10188 chr2L - chr2L_19508266_19508416;chr2L_19508266_19508351 chr2L_19508266_19508325 chr2L_19507490_19508265;chr2L_19508417_19508726 96.15 NA NA NA NA NA NA 95.45 92.86 NA NA 100.00 NA NA NA 100.00 NA NA NA 96.15 NA 96.55 85.00 NA NA NA NA NA 100.00 NA NA NA NA 100.00 95.00 NA NA NA NA 95.00 NA 100.00 NA NA NA NA NA 100.00 92.31 NA 96.15 NA NA NA NA NA NA NA K jcn_only_AD Tango5,noncoding_22970,I_chrX_10659836_10661185 chrX - chrX_10656468_10658202;chrX_10656468_10658389 chrX_10656468_10658117 chrX_10656442_10656467;chrX_10658390_10658400 3.07 8.51 1.15 0.00 1.43 5.41 1.22 0.96 0.55 2.17 4.35 3.07 1.79 1.43 0.00 2.25 2.78 1.39 2.20 1.42 0.00 6.42 2.22 4.95 0.00 7.32 5.41 12.00 14.29 9.84 2.06 8.82 2.90 2.54 3.85 16.67 4.20 0.00 4.55 6.25 5.88 4.68 1.67 7.14 4.92 21.74 12.50 1.75 3.62 0.00 6.06 1.59 3.23 11.11 0.98 2.22 16.00 9.52 K jcn_only_AD cals,I_chr4_1136706_1136765,I_chr4_1136706_1138476,I_chr4_1139644_1142084,RI_chr4_1141233_1142084 chr4 - chr4_1136706_1136951 chr4_1136706_1136765 chr4_1136606_1136705;chr4_1136952_1137051 0.00 0.00 0.00 0.00 0.00 0.00 1.80 1.54 2.72 0.00 0.00 2.47 0.00 0.00 2.70 0.93 2.08 1.96 0.00 1.14 0.00 0.00 0.00 2.44 NA NA 0.00 NA NA 0.00 0.00 3.57 NA 0.85 2.78 0.00 0.00 0.00 0.00 3.12 0.00 0.00 1.75 1.56 0.00 0.00 0.00 0.00 0.00 0.00 2.67 0.00 0.00 0.00 0.00 0.00 2.08 NA K jcn_only_AD CG4552,I_chr2L_1129503_1129818 chr2L + chr2L_1129503_1129818 chr2L_1129506_1129818 chr2L_1129819_1129918;chr2L_1129403_1129502 99.40 99.28 100.00 100.00 98.68 100.00 99.39 100.00 99.14 100.00 98.97 99.52 98.73 100.00 99.25 99.40 100.00 100.00 99.28 100.00 100.00 99.28 99.38 99.12 98.88 100.00 98.06 99.07 100.00 100.00 98.17 98.97 100.00 98.87 100.00 100.00 99.08 99.07 98.51 99.51 100.00 100.00 96.74 100.00 99.07 100.00 98.95 100.00 98.71 100.00 100.00 100.00 98.95 100.00 100.00 99.00 99.35 98.59 K jcn_only_AD Tango1,I_chr2L_6652445_6652752,I_chr2L_6652699_6652752 chr2L + chr2L_6652427_6652496 chr2L_6652445_6652496 chr2L_6652497_6652569;chr2L_6652345_6652426 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 99.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention aub chr2L - chr2L_10998833_10998896 chr2L_10998832_10998833;chr2L_10998896_10998897 chr2L_10997819_10998832;chr2L_10998897_10999007 0.00 3.85 0.00 5.13 0.00 0.00 4.11 0.00 3.31 9.09 0.00 1.06 0.00 2.27 0.00 0.00 0.00 0.00 0.00 3.70 0.00 15.15 4.29 3.12 3.85 4.65 3.39 5.17 11.11 0.00 5.00 0.00 0.00 0.00 0.00 6.52 2.90 0.00 0.00 0.00 6.67 4.35 0.00 2.00 0.00 0.00 0.00 2.94 1.10 5.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention simj,I_chr3L_10680263_10680313 chr3L + chr3L_10679362_10680151 chr3L_10679361_10679362;chr3L_10680151_10680152 chr3L_10679064_10679361;chr3L_10680152_10680174 17.65 NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA 9.52 25.00 NA 14.29 NA 36.84 33.33 7.69 25.00 NA NA NA 46.15 NA 14.71 23.08 NA 17.65 14.29 NA NA NA 15.38 0.00 NA NA 30.77 NA NA 13.04 NA NA NA NA NA NA NA K intron_retention CG1513,I_chr2R_5778649_5778739 chr2R - chr2R_5771000_5771049 chr2R_5770999_5771000;chr2R_5771049_5771050 chr2R_5770102_5770999;chr2R_5771050_5771348 100.00 100.00 100.00 98.25 100.00 100.00 98.65 100.00 98.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 95.24 95.00 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 97.44 96.88 100.00 100.00 K jcn_only_AD PGRP-LC,E_chr3L_9335847_9338977 chr3L + chr3L_9338168_9338708 chr3L_9338225_9338708 chr3L_9338709_9338771;chr3L_9338000_9338167 1.47 0.00 NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA 8.33 NA 4.88 NA 4.55 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 4.76 NA NA NA NA 3.70 NA NA NA NA NA NA 6.67 3.33 4.00 NA NA NA NA NA 2.94 0.00 K intron_retention Xe7,RI_chr3R_1493064_1493414,CRI_chr3R_1493111_1493414 chr3R - chr3R_1493028_1493414 chr3R_1493027_1493028;chr3R_1493414_1493415 chr3R_1493011_1493027;chr3R_1493415_1493514 28.57 25.00 25.00 47.22 17.65 38.46 35.29 42.86 34.00 33.33 30.00 42.11 55.00 50.00 33.33 23.68 27.27 35.29 30.00 37.25 40.91 12.50 21.88 28.57 NA 26.92 20.00 29.41 15.00 28.57 34.62 12.50 19.05 33.33 33.33 37.50 18.52 15.79 20.00 27.91 14.29 38.89 30.00 35.00 11.76 19.23 23.08 20.69 28.57 22.73 24.14 40.00 13.64 27.27 33.33 24.24 32.00 13.89 K alternative_donor grp,REI_chr2L_16696770_16697500,I_chr2L_16697644_16698961,R_chr2L_16698072_16698138 chr2L + chr2L_16696763_16697500 chr2L_16696770_16697500 chr2L_16697501_16697600;chr2L_16696670_16696762 1.59 0.99 1.43 0.93 0.00 0.00 0.00 2.22 1.71 0.00 0.00 0.00 4.44 0.00 3.28 2.90 0.00 2.00 0.00 4.23 0.00 1.41 1.53 1.87 1.72 1.56 3.00 1.89 3.28 2.04 9.09 1.59 0.86 1.09 1.69 1.12 1.48 3.37 2.00 3.31 1.72 1.83 2.33 1.27 1.27 0.98 2.67 1.23 3.36 1.35 2.00 1.75 2.94 3.30 1.41 0.98 3.61 1.39 K intron_retention l(3)mbt,I_chr3R_23096096_23096561 chr3R - chr3R_23097919_23098562 chr3R_23097918_23097919;chr3R_23098562_23098563 chr3R_23096865_23097918;chr3R_23098563_23098663 6.28 NA NA 0.00 NA NA NA 6.67 11.11 NA NA 6.67 NA NA NA 14.29 NA NA NA 5.88 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD CDase chr3R + chr3R_26286512_26288536;chr3R_26286617_26288536;chr3R_26286613_26288536;chr3R_26286631_26288536 chr3R_26286611_26288536 chr3R_26288537_26288691;chr3R_26286221_26286511 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 4.17 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2436229_2439498 chr3L_2436228_2436229;chr3L_2439498_2439499 chr3L_2436209_2436228;chr3L_2439499_2439583 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Unc-76,RI_chrX_1983640_1985001,I_chrX_2002576_2003165 chrX + chrX_1975693_1985001 chrX_1983640_1985001 chrX_1985002_1985100;chrX_1974778_1975692 1.06 1.80 0.46 0.35 1.20 0.53 0.93 1.06 0.75 1.18 1.40 1.87 2.26 1.17 1.94 0.47 0.69 1.36 1.53 1.06 1.62 1.18 1.79 1.94 2.30 2.41 1.50 2.03 2.25 0.33 1.01 0.51 1.04 1.38 0.93 1.06 0.43 1.13 1.00 0.73 0.78 0.59 0.65 0.76 2.13 1.08 2.82 0.50 0.63 1.03 1.88 0.00 0.64 0.74 0.00 0.00 3.49 0.00 K alternative_acceptor CG11980 chr3R + chr3R_4829798_4829863 chr3R_4829798_4829860 chr3R_4829756_4829797;chr3R_4829864_4830173 16.67 NA NA 12.50 NA NA NA 23.81 18.52 NA NA 14.81 NA NA 16.67 21.43 21.43 NA 25.00 5.56 NA NA NA NA NA 26.32 NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA 15.15 11.76 NA NA NA NA NA 13.79 NA NA NA NA NA 15.38 NA NA NA K intron_retention Pgi,I_chr2R_4801076_4801329 chr2R - chr2R_4801072_4801214 chr2R_4801071_4801072;chr2R_4801214_4801215 chr2R_4800976_4801071;chr2R_4801215_4801631 100.00 100.00 98.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.96 100.00 100.00 100.00 100.00 K intron_retention CG5168 chr2L + chr2L_10423681_10423750 chr2L_10423680_10423681;chr2L_10423750_10423751 chr2L_10423429_10423680;chr2L_10423751_10424098 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.59 0.29 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 N jcn_only_AA zetaCOP chr3L - chr3L_16664943_16665553 chr3L_16665251_16665553 chr3L_16665554_16665644;chr3L_16664764_16664942 0.00 0.00 0.00 5.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette PRL-1,I_chr2L_16247385_16247503,I_chr2L_16250028_16250080 chr2L - chr2L_16247385_16248601 chr2L_16247385_16247503;chr2L_16247765_16248601 chr2L_16247504_16247764 chr2L_16247285_16247384;chr2L_16248602_16248768 11.21 10.30 7.11 8.65 4.35 5.43 4.59 7.43 10.91 18.06 31.85 6.05 11.25 8.13 9.65 20.67 10.76 6.70 7.02 8.26 26.83 33.85 13.55 12.33 8.73 9.33 11.06 5.71 15.38 15.57 11.21 13.98 17.14 12.42 11.72 17.28 16.67 10.78 10.80 15.74 11.11 10.05 9.41 16.91 21.69 14.56 12.86 19.51 8.66 15.00 9.64 8.64 15.71 11.72 6.72 11.26 17.84 15.58 N cassette CG33558,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2816779_2817753;chr2R_2816342_2817753 chr2R_2816342_2817327,chr2R_2816779_2817327;chr2R_2817604_2817753 chr2R_2817328_2817603 chr2R_2816242_2816341;chr2R_2817754_2817762 85.00 80.85 95.65 92.59 44.00 61.54 80.95 58.06 83.87 100.00 93.75 92.45 58.82 80.95 77.42 100.00 80.00 66.67 70.83 77.05 76.19 92.31 89.02 85.92 71.43 73.33 88.89 71.43 89.47 83.12 95.00 88.89 90.16 93.02 81.82 89.80 85.00 80.95 88.17 96.04 78.72 88.14 80.00 96.00 79.01 83.33 90.24 77.03 76.47 92.39 82.14 86.21 91.11 85.25 86.96 90.48 83.33 85.25 K alternative_acceptor mmd chrX - chrX_15843011_15843552 chrX_15843028_15843552 chrX_15843553_15843849;chrX_15842400_15843010 50.00 47.06 40.00 87.50 50.00 66.67 50.00 61.90 56.41 NA NA 88.89 69.23 50.00 48.00 NA 50.00 43.75 61.54 53.49 NA 44.44 NA 33.33 NA 55.56 40.00 NA NA NA 43.75 NA NA 32.00 NA NA 47.06 NA 43.75 60.00 NA 48.48 50.00 NA NA NA 46.15 NA 50.00 NA 52.63 NA NA NA 61.11 NA 57.89 NA K alternative_donor Hel25E,I_chr2L_5540301_5540396 chr2L - chr2L_5540301_5540424;chr2L_5540301_5540971 chr2L_5540301_5540396 chr2L_5540201_5540300;chr2L_5540972_5541090 2.25 0.92 2.76 1.08 1.13 1.54 4.01 2.08 2.25 5.95 1.78 0.87 3.61 1.20 1.10 2.57 1.29 2.40 2.27 1.71 2.87 3.45 1.98 2.03 4.07 2.69 2.32 3.05 6.33 2.34 7.27 5.60 7.11 1.72 2.24 3.59 2.74 1.65 1.43 5.51 8.98 1.10 2.69 1.40 1.77 3.99 1.69 8.11 1.51 3.32 1.98 1.60 2.07 2.35 2.25 1.64 1.00 5.79 K jcn_only_AA MB8.chr3R.pasa.66,CG1091,RI_chr3R_2910490_2910686,RI_chr3R_2911041_2911135,RI_chr3R_2946518_2946663 chr3R - chr3R_2911041_2911135 chr3R_2911080_2911135 chr3R_2911136_2911234;chr3R_2910975_2911040 98.13 100.00 100.00 98.18 98.48 97.06 96.55 98.28 99.13 100.00 96.23 98.90 98.33 94.64 94.74 98.57 94.00 95.65 98.28 97.20 95.45 100.00 97.62 100.00 100.00 100.00 96.23 97.56 100.00 97.18 98.13 97.37 100.00 98.92 97.96 100.00 96.15 98.04 96.08 99.19 98.18 97.14 100.00 100.00 96.43 98.86 91.18 99.15 97.39 97.73 96.15 95.56 95.65 100.00 93.94 100.00 100.00 96.94 K intron_retention poe chr2L - chr2L_8054594_8054656 chr2L_8054593_8054594;chr2L_8054656_8054657 chr2L_8054380_8054593;chr2L_8054657_8056253 0.00 0.00 0.61 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.22 0.00 2.06 1.09 0.00 0.00 0.60 0.83 2.62 18.29 0.00 0.00 0.00 0.00 0.00 0.00 1.04 1.55 0.74 0.38 0.62 0.00 1.16 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 1.45 0.88 0.00 0.17 0.00 K jcn_only_AD fs(1)h,I_chrX_7938425_7938871,I_chrX_7938425_7938878,I_chrX_7938449_7944184,I_chrX_7950171_7952371,I_chrX_7954192_7955240 chrX - chrX_7938425_7944184;chrX_7938425_7938871 chrX_7938425_7938878 chrX_7938366_7938424;chrX_7944185_7944284 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.99 0.00 0.00 0.00 0.00 0.00 3.33 0.00 1.08 0.00 2.74 0.00 1.08 0.00 0.00 0.00 0.00 0.00 1.25 2.27 3.03 0.85 1.45 0.00 0.00 1.27 0.00 1.12 0.00 1.67 0.93 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD miple2,I_chr3L_271508_273549,I_chr3L_271695_273549,I_chr3L_271922_273549,I_chr3L_274251_274594 chr3L + chr3L_271217_273549;chr3L_273391_273549;chr3L_271695_273549 chr3L_271792_273549 chr3L_273550_273649;chr3L_271209_271216 97.37 94.23 93.33 97.98 97.06 100.00 100.00 91.30 98.25 96.55 NA 100.00 NA 93.94 100.00 100.00 100.00 NA 93.18 97.44 NA 97.83 93.41 100.00 97.83 100.00 100.00 93.75 94.87 97.50 94.44 100.00 94.87 95.88 97.87 94.44 93.75 97.37 98.41 96.34 95.92 97.26 93.33 95.70 100.00 98.04 93.07 96.15 96.64 96.09 95.29 100.00 98.48 100.00 100.00 98.57 93.24 100.00 K alternative_donor bbc,REI_chr2R_9379401_9381986 chr2R - chr2R_9379401_9382398 chr2R_9379401_9381755 chr2R_9379301_9379400;chr2R_9382399_9382462 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K multi_cassette DCAP,E_chr2R_6159586_6174578,I_chr2R_6164310_6172914,I_chr2R_6172307_6179999,I_chr2R_6178643_6181126,RI_chr2R_6183553_6192101,I_chr2R_6188094_6192101 chr2R + chr2R_6172307_6182116 chr2R_6172307_6179999;chr2R_6180378_6180845;chr2R_6180945_6181126;chr2R_6181267_6181365;chr2R_6181439_6181654;chr2R_6181688_6182116 chr2R_6180000_6180377;chr2R_6180846_6180944;chr2R_6181127_6181266;chr2R_6181366_6181438;chr2R_6181655_6181687 chr2R_6172207_6172306;chr2R_6182117_6182270 100.00 83.33 100.00 50.00 80.00 83.33 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 85.71 83.33 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 66.67 100.00 NA 75.00 100.00 83.33 100.00 85.71 100.00 100.00 100.00 88.89 80.00 88.89 85.71 75.00 75.00 66.67 80.00 100.00 100.00 100.00 80.00 100.00 100.00 83.33 100.00 100.00 80.00 100.00 83.33 83.33 75.00 K intron_retention RpS18,CG8908,EI_chr2R_16151918_16151997,I_chr2R_16151918_16152036,I_chr2R_16151938_16152065,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151918_16151997 chr2R_16151917_16151918;chr2R_16151997_16151998 chr2R_16151852_16151917;chr2R_16151998_16152066 99.72 99.61 99.65 99.73 99.79 99.63 99.76 99.65 99.75 99.77 99.51 99.67 99.63 99.73 99.83 99.26 99.55 99.67 99.79 99.62 99.62 99.60 99.68 99.69 99.67 99.68 99.86 99.73 99.79 99.84 99.42 99.91 99.72 99.68 99.70 99.56 99.72 99.75 99.75 99.71 99.72 99.83 99.62 99.75 99.94 99.63 99.86 99.85 99.70 99.90 99.79 99.79 99.70 99.78 99.64 99.66 99.90 99.86 K cassette katanin-60 chr3R - chr3R_1056348_1057778 chr3R_1056348_1056714;chr3R_1056937_1057778 chr3R_1056715_1056936 chr3R_1055744_1056347;chr3R_1057779_1057940 97.92 98.11 97.87 75.71 97.50 92.50 98.28 89.71 99.04 100.00 94.87 91.36 89.47 97.14 100.00 98.21 100.00 97.92 91.11 96.12 90.00 84.29 98.77 98.48 97.73 97.50 98.15 97.37 93.22 95.24 98.08 100.00 94.37 98.51 97.92 98.04 98.61 98.18 98.55 95.74 97.30 98.82 92.86 96.36 98.33 96.77 98.18 98.65 96.05 98.70 94.12 97.83 100.00 97.44 98.28 100.00 100.00 100.00 K intron_retention CG5641,Aos1 chr3R - chr3R_8254697_8254758 chr3R_8254696_8254697;chr3R_8254758_8254759 chr3R_8254568_8254696;chr3R_8254759_8255049 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 NA 0.00 0.00 0.00 0.00 8.70 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 8.00 7.27 0.00 0.00 6.67 7.69 1.85 0.00 0.00 0.00 0.00 0.00 7.69 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5098,I_chr2R_13982729_13983185 chr2R + chr2R_13982729_13983786 chr2R_13982728_13982729;chr2R_13983786_13983787 chr2R_13982629_13982728;chr2R_13983787_13983983 25.00 NA NA NA NA NA NA NA 25.00 NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_donor JhI-26,I_chr2R_12177114_12177266 chr2R + chr2R_12178257_12178432 chr2R_12178379_12178432 chr2R_12178433_12178520;chr2R_12177457_12178256 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.75 0.52 0.00 0.00 0.00 0.00 1.54 1.12 0.00 0.00 0.00 0.00 0.00 0.00 3.73 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.79 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention skpA chrX + chrX_550638_551131 chrX_550637_550638;chrX_551131_551132 chrX_550585_550637;chrX_551132_551937 13.33 9.52 NA 10.00 NA NA 9.76 13.33 23.08 NA 0.00 12.50 14.29 NA 15.38 16.67 NA 7.69 10.00 16.67 0.00 NA 18.18 8.70 NA 16.00 20.00 NA 17.39 NA 23.08 NA NA 30.00 NA NA 8.33 NA 10.53 22.22 NA 13.04 NA NA NA 17.65 NA NA 16.67 11.76 9.09 14.29 NA NA 17.39 NA 8.70 0.00 K alternative_acceptor eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20344831_20346544 chr3L_20344831_20345906 chr3L_20344683_20344830;chr3L_20346545_20346686 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.13 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG42331 chr3R + chr3R_20605978_20606070 chr3R_20605978_20606046 chr3R_20605889_20605977;chr3R_20606071_20606166 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Pino,I_chr2L_1115944_1117443,I_chr2L_1117517_1117866,I_chr2L_1117918_1118565,I_chr2L_1118700_1128128,RI_chr2L_1123440_1128128,RI_chr2L_1128073_1128128 chr2L - chr2L_1117517_1128128 chr2L_1117516_1117517;chr2L_1128128_1128129 chr2L_1117444_1117516;chr2L_1128129_1128228 2.71 2.99 0.00 0.00 0.00 0.00 0.00 0.00 4.04 0.00 NA 7.27 0.00 0.00 6.90 4.44 0.00 5.56 0.00 2.50 4.76 5.33 1.65 2.56 0.00 0.00 3.16 4.29 6.25 3.39 0.00 5.13 4.69 4.65 3.57 4.35 1.29 2.00 1.89 2.91 6.67 3.03 0.00 2.86 9.76 0.00 0.00 4.08 3.77 4.82 0.00 3.33 0.00 2.13 0.00 4.11 4.41 0.00 K intron_retention CG13868 chr2R - chr2R_16197252_16197317 chr2R_16197251_16197252;chr2R_16197317_16197318 chr2R_16196514_16197251;chr2R_16197318_16197688 0.69 0.00 0.59 0.60 0.00 0.69 1.56 1.30 1.40 1.53 1.03 1.48 0.00 0.85 0.52 0.00 0.00 0.00 1.40 0.33 0.69 1.00 0.83 0.40 2.55 0.00 3.20 5.00 4.61 0.00 0.00 0.00 0.00 0.85 1.40 2.28 1.13 0.00 0.00 1.41 0.00 1.15 1.00 1.13 0.71 2.04 0.41 0.75 0.67 0.00 1.03 0.00 0.00 0.58 0.61 0.00 1.76 1.37 K intron_retention CG7339 chr3L + chr3L_11642052_11642108 chr3L_11642051_11642052;chr3L_11642108_11642109 chr3L_11641765_11642051;chr3L_11642109_11642591 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 K intron_retention Hcf,I_chr4_384272_384649,I_chr4_391984_392875 chr4 + chr4_384266_384649 chr4_384265_384266;chr4_384649_384650 chr4_384172_384265;chr4_384650_384651 90.91 85.71 95.45 90.32 90.91 86.67 96.55 89.19 86.67 NA 90.00 80.95 86.67 94.44 94.44 84.62 93.33 100.00 94.44 87.88 90.00 90.91 95.24 94.12 100.00 92.86 90.00 90.91 NA 92.86 94.12 NA 100.00 78.12 90.91 90.91 92.31 88.89 100.00 90.00 NA 95.65 100.00 100.00 NA 88.89 NA 100.00 89.29 88.89 94.44 NA NA NA 90.91 NA 100.00 NA K intron_retention CG7834,I_chr3R_25628402_25628511,I_chr3R_25632049_25632125,RI_chr3R_25658089_25658914 chr3R - chr3R_25627589_25627649 chr3R_25627588_25627589;chr3R_25627649_25627650 chr3R_25627357_25627588;chr3R_25627650_25628381 85.09 79.88 84.25 96.79 89.80 87.62 83.25 88.93 86.33 84.72 90.53 86.84 79.71 90.65 85.80 88.79 89.17 88.57 86.75 85.66 85.09 33.85 84.85 81.36 87.37 94.41 87.10 76.09 84.52 78.76 87.32 83.46 75.32 88.55 78.99 82.50 85.25 81.42 82.80 78.07 85.87 86.86 86.96 89.34 84.44 82.67 73.20 87.25 89.00 83.11 76.37 82.86 83.74 79.49 87.58 78.76 78.24 86.31 K jcn_only_AA CG8726 chr2R - chr2R_3857956_3858036 chr2R_3857980_3858036 chr2R_3858037_3858218;chr2R_3857740_3857955 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 98.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.33 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 K intron_retention CG18812,I_chr2R_3617214_3622585 chr2R - chr2R_3606812_3606880 chr2R_3606811_3606812;chr2R_3606880_3606881 chr2R_3606058_3606811;chr2R_3606881_3607079 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 1.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG5646,I_chr3R_23386250_23386484,I_chr3R_23386287_23386484 chr3R - chr3R_23386250_23386484;chr3R_23386220_23386484;chr3R_23386287_23386484 chr3R_23386237_23386484 chr3R_23386485_23386584;chr3R_23386187_23386219 68.18 58.82 81.82 87.50 100.00 62.50 74.07 90.48 69.44 62.50 88.89 68.18 87.50 68.75 55.00 53.33 44.44 54.55 75.00 86.21 80.00 52.94 77.42 70.83 72.73 100.00 60.00 59.26 72.73 60.87 69.44 54.55 61.54 75.00 60.87 61.11 80.65 73.68 48.72 50.00 73.33 73.08 72.73 68.75 64.71 66.67 72.22 50.00 61.54 48.00 56.25 64.29 45.45 66.67 59.09 65.00 75.00 73.33 K intron_retention CG32069,CG32075,CG6310 chr3L - chr3L_11055329_11055390 chr3L_11055328_11055329;chr3L_11055390_11055391 chr3L_11055212_11055328;chr3L_11055391_11055489 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.00 0.00 0.00 4.88 0.00 0.00 0.00 4.65 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA tud,I_chr2R_17086183_17086333 chr2R + chr2R_17074553_17074616 chr2R_17074553_17074607 chr2R_17073474_17074552;chr2R_17074617_17075437 98.31 96.83 97.66 98.39 99.26 98.52 99.65 99.27 97.51 96.36 99.24 98.82 99.44 97.19 97.54 99.55 98.55 97.63 96.34 97.54 98.11 98.59 97.92 98.99 96.08 98.42 98.32 98.31 98.31 97.25 99.42 100.00 100.00 99.63 96.55 92.31 98.80 98.61 97.12 98.10 98.25 97.99 97.20 96.73 97.44 97.56 100.00 99.43 98.88 96.00 97.28 100.00 98.21 100.00 97.82 100.00 95.92 98.55 K intron_retention trsn,I_chr2R_6421904_6422354 chr2R - chr2R_6367416_6367468 chr2R_6367415_6367416;chr2R_6367468_6367469 chr2R_6367328_6367415;chr2R_6367469_6367633 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD RpL5,I_chr2L_22427822_22428348,I_chr2L_22428750_22428846 chr2L - chr2L_22427796_22428348 chr2L_22427796_22428143 chr2L_22427722_22427795;chr2L_22428349_22428391 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CSN5 chr3R + chr3R_12296786_12296850;chr3R_12296683_12296850 chr3R_12296792_12296850 chr3R_12296851_12297070;chr3R_12296215_12296682 73.81 82.35 79.73 76.56 75.47 76.54 78.20 81.25 73.38 78.05 75.00 73.62 77.14 73.08 68.09 75.00 70.31 73.40 67.50 70.32 71.70 75.56 74.38 68.33 71.88 62.89 79.82 84.00 70.37 64.15 69.15 75.34 73.13 75.35 73.75 68.57 73.81 71.43 72.64 76.92 70.65 75.71 80.00 84.88 77.27 69.40 72.80 78.30 77.71 75.61 78.86 84.15 72.62 70.87 71.58 71.17 71.84 76.47 K cassette CG17508 chr2R + chr2R_1496995_1498696 chr2R_1496995_1497568;chr2R_1497762_1498696 chr2R_1497569_1497761 chr2R_1496895_1496994;chr2R_1498697_1499080 90.08 84.00 90.12 89.58 89.83 84.48 93.33 91.49 89.81 95.65 100.00 91.89 92.73 93.94 92.11 90.08 94.74 91.30 90.32 90.44 96.72 72.22 89.71 91.25 87.50 80.56 88.89 96.15 75.00 91.49 91.03 87.80 82.69 92.00 85.71 73.53 88.52 84.21 86.79 90.91 88.24 87.23 90.28 89.39 76.60 92.19 90.28 96.15 90.34 88.57 88.46 91.38 82.22 93.33 87.88 92.42 86.41 88.41 K intron_retention yuri,F_chr2L_15260838_15261717 chr2L - chr2L_15264096_15264150 chr2L_15264095_15264096;chr2L_15264150_15264151 chr2L_15263770_15264095;chr2L_15264151_15264227 84.42 86.96 84.71 91.30 84.85 76.06 88.24 81.40 86.74 87.72 89.80 83.06 80.82 84.42 79.79 83.87 86.49 80.90 80.49 86.93 84.15 76.67 98.29 83.65 92.06 90.48 92.63 72.22 88.00 86.42 88.57 79.66 71.31 84.09 86.15 98.04 86.11 85.23 88.35 85.27 78.00 85.00 85.00 83.33 71.83 84.52 81.25 83.51 81.08 85.71 86.27 75.00 80.00 80.95 82.80 82.05 80.73 80.36 K alternative_acceptor CG5850,I_chr2L_9963013_9963451 chr2L - chr2L_9961615_9961794 chr2L_9961618_9961794 chr2L_9961795_9962059;chr2L_9961359_9961614 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention opa1-like,I_chr2R_10119470_10120234,I_chr2R_10121848_10121900,I_chr2R_10122128_10122197,I_chr2R_10122334_10122393 chr2R - chr2R_10118750_10118812 chr2R_10118749_10118750;chr2R_10118812_10118813 chr2R_10118665_10118749;chr2R_10118813_10118931 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.86 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5360 chr2R + chr2R_19411471_19411871 chr2R_19411470_19411471;chr2R_19411871_19411872 chr2R_19411452_19411470;chr2R_19411872_19411935 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 92.86 91.67 NA NA 100.00 100.00 NA 100.00 90.00 NA NA 88.89 88.89 NA NA NA NA NA 87.50 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 100.00 NA 88.89 NA NA NA 100.00 NA NA NA K alternative_donor RpL35,I_chrX_5566913_5567030,I_chrX_5567168_5567220 chrX + chrX_5566913_5567030;chrX_5566556_5567030 chrX_5566909_5567030 chrX_5567031_5567130;chrX_5566554_5566555 87.83 90.93 87.44 88.25 84.28 84.20 90.99 88.27 87.56 86.27 85.00 86.04 88.48 88.61 84.64 92.44 87.24 87.70 89.42 87.83 87.06 86.61 91.51 91.07 89.73 87.28 94.16 79.23 91.91 82.72 91.66 83.15 63.83 89.79 85.24 91.21 87.89 87.87 84.21 56.11 90.30 85.35 89.06 76.69 82.39 91.77 90.15 87.52 87.78 92.37 94.33 88.98 70.99 93.66 87.69 91.45 91.20 82.31 K intron_retention MSBP,RI_chrX_15783766_15784064,I_chrX_15783766_15785978 chrX - chrX_15782302_15782376 chrX_15782301_15782302;chrX_15782376_15782377 chrX_15781610_15782301;chrX_15782377_15782529 0.00 0.00 0.00 0.76 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 K intron_retention bcn92,E_chrX_2042753_2043276,wapl,Cyp4d1 chrX - chrX_2043375_2043434 chrX_2043374_2043375;chrX_2043434_2043435 chrX_2043277_2043374;chrX_2043435_2043669 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 1.40 0.74 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.60 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31713,CREI_chr2L_9938511_9938564,RI_chr2L_9942818_9944294,I_chr2L_9944682_9947179 chr2L - chr2L_9938511_9938568 chr2L_9938510_9938511;chr2L_9938568_9938569 chr2L_9938411_9938510;chr2L_9938569_9938664 6.67 6.67 7.69 10.00 NA NA 11.54 0.00 12.12 NA 6.25 0.00 0.00 5.26 0.00 13.79 11.11 9.09 3.85 7.32 NA NA 5.26 13.33 NA 0.00 10.53 NA NA 7.41 7.69 0.00 9.09 9.38 NA NA NA NA 0.00 4.76 6.67 8.89 0.00 0.00 6.06 8.33 0.00 11.43 16.67 28.57 5.88 NA 4.76 7.69 6.67 9.09 4.65 5.80 K jcn_only_AD ND42,RI_chr3R_17861471_17861539 chr3R + chr3R_17853503_17853741 chr3R_17853547_17853741 chr3R_17853742_17854870;chr3R_17853498_17853502 0.00 0.00 1.41 0.81 2.99 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.85 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 1.69 0.00 0.00 0.00 2.56 1.69 0.00 3.23 0.00 0.00 0.00 0.00 1.59 NA 0.00 0.00 0.00 1.39 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention dnk chr3R + chr3R_14807626_14807701 chr3R_14807625_14807626;chr3R_14807701_14807702 chr3R_14807274_14807625;chr3R_14807702_14807972 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8444,Vps16A chr3R + chr3R_5086490_5086712 chr3R_5086489_5086490;chr3R_5086712_5086713 chr3R_5086372_5086489;chr3R_5086713_5087065 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 1.74 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045275_16046104;chr3L_16045275_16046111 chr3L_16045275_16045854 chr3L_16045255_16045274;chr3L_16046112_16046204 48.39 45.45 43.48 34.29 33.33 45.45 36.36 48.48 42.42 63.16 50.00 46.67 50.00 40.74 46.15 50.00 41.67 42.31 42.42 50.00 45.83 57.14 48.39 45.00 50.00 35.48 52.38 72.00 43.48 55.56 48.15 50.00 58.33 38.00 45.83 57.78 48.00 69.23 56.25 53.66 50.00 44.00 46.15 46.43 57.14 47.62 50.00 54.35 35.42 42.86 50.00 57.14 50.00 57.14 40.00 55.56 62.50 56.52 K alternative_donor Pcmt chr3R - chr3R_1378768_1378992 chr3R_1378768_1378947 chr3R_1378542_1378767;chr3R_1378993_1379397 4.21 2.80 4.44 5.41 8.00 3.12 5.81 4.88 8.18 4.55 6.25 4.05 5.97 3.64 3.49 3.74 6.38 4.84 5.36 4.95 3.28 13.48 0.87 2.22 1.49 14.29 2.94 4.23 11.94 4.05 3.49 7.92 6.38 4.21 2.90 3.12 2.38 3.49 1.94 2.98 6.38 5.97 4.88 3.81 5.81 4.38 1.48 5.00 6.03 2.01 3.19 1.41 4.27 0.00 3.80 0.71 2.73 9.33 K intron_retention CG31619,I_chr2L_21725446_21728027 chr2L + chr2L_21725446_21727005 chr2L_21725445_21725446;chr2L_21727005_21727006 chr2L_21725346_21725445;chr2L_21727006_21727362 3.37 5.17 0.00 20.59 0.00 0.00 20.00 17.78 6.98 5.71 NA 9.23 NA 3.70 7.69 5.26 4.35 0.00 0.00 6.90 NA 8.33 2.50 2.90 3.45 6.25 8.89 0.00 4.00 2.90 5.00 2.27 8.00 0.00 3.70 0.00 4.60 0.00 2.70 4.12 0.00 4.40 8.33 0.00 4.62 0.00 0.00 2.74 4.48 0.00 0.00 0.00 0.00 0.00 2.78 3.28 6.67 1.64 K alternative_donor CG4199,I_chrX_1962457_1964222 chrX - chrX_1965614_1965872;chrX_1965614_1967149;chrX_1965614_1966582 chrX_1965614_1967409 chrX_1965393_1965613;chrX_1967410_1967460 0.00 2.94 3.33 0.00 0.00 0.00 6.06 0.00 0.00 4.55 0.00 1.92 7.14 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 10.00 1.96 0.00 0.00 0.00 0.00 2.94 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 1.82 0.00 1.92 2.90 4.00 1.54 4.76 2.44 0.00 0.00 0.00 0.00 1.64 0.00 0.00 3.23 2.78 0.00 0.00 2.94 0.00 2.56 N jcn_only_AA Smr,I_chrX_12625852_12636351,REI_chrX_12635675_12636351 chrX - chrX_12625938_12636351;chrX_12635675_12636351;chrX_12635693_12636351 chrX_12625852_12636351 chrX_12636352_12636441 5.97 5.56 0.00 2.94 11.54 2.08 13.04 3.37 8.47 0.00 4.35 9.46 0.00 3.45 3.45 12.79 3.57 3.70 7.41 9.59 4.17 NA 8.33 NA NA 8.33 NA 0.00 NA 7.69 9.26 NA 0.00 5.97 0.00 NA NA NA NA 2.13 NA 7.94 11.11 18.18 NA 8.00 NA 11.11 10.26 NA 0.00 12.50 NA NA 5.41 NA NA 13.89 K intron_retention CG11696,CG11695 chrX + chrX_11469228_11469286 chrX_11469227_11469228;chrX_11469286_11469287 chrX_11468086_11469227;chrX_11469287_11469671 11.69 13.64 12.77 12.50 10.00 10.26 14.63 15.38 15.07 20.00 6.45 10.61 6.25 14.29 14.29 13.64 13.79 19.51 21.05 13.24 18.75 18.87 10.00 7.69 8.11 18.18 23.33 12.82 5.41 10.81 19.35 6.25 20.00 17.39 6.25 12.12 10.34 19.51 11.69 9.80 9.52 14.63 10.34 14.29 6.12 0.00 5.26 10.00 20.00 4.55 8.00 11.11 5.71 11.36 16.22 6.12 9.80 5.88 K intron_retention Med,CG1792 chr3R + chr3R_27438831_27438981 chr3R_27438830_27438831;chr3R_27438981_27438982 chr3R_27438609_27438830;chr3R_27438982_27439596 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG42595,I_chr2RHet_3137161_3169314,I_chr2RHet_3137489_3169314,I_chr2RHet_3155517_3174709,I_chr2RHet_3169357_3169432,RI_chr2RHet_3175044_3179353,I_chr2RHet_3179481_3179586 chr2RHet - chr2RHet_3169357_3169432 chr2RHet_3169385_3169432 chr2RHet_3169433_3169532;chr2RHet_3169315_3169356 95.22 96.43 96.77 90.54 96.97 96.77 93.33 97.44 92.73 100.00 94.74 95.08 100.00 97.14 100.00 92.00 94.00 95.45 98.39 94.00 92.31 90.91 97.06 96.43 94.74 91.11 96.67 100.00 92.86 100.00 93.02 90.91 100.00 95.35 95.65 78.57 94.12 86.67 100.00 96.43 100.00 90.91 95.83 90.70 NA 100.00 92.31 100.00 98.82 90.00 96.77 90.62 100.00 91.67 91.23 94.12 90.48 94.12 N cassette CG42490,noncoding_3620,I_chr2L_18665287_18666474,RI_chr2L_18666413_18666474,CREI_chr2L_18666629_18666680 chr2L + chr2L_18665287_18666474 chr2L_18665287_18665675;chr2L_18665915_18666474 chr2L_18665676_18665914 chr2L_18665274_18665286;chr2L_18666475_18666511 87.50 93.75 90.48 80.00 81.82 90.91 84.00 65.22 85.71 85.71 90.91 86.21 91.67 100.00 85.71 81.82 76.47 100.00 78.57 94.59 91.67 88.89 90.91 84.62 90.00 81.82 94.12 83.33 77.78 91.67 88.24 85.71 80.00 88.46 92.86 88.89 95.24 100.00 95.65 84.21 78.57 88.24 80.00 76.92 90.91 77.42 95.00 82.35 87.10 94.12 94.74 94.74 87.50 92.31 82.61 80.00 75.00 69.23 N intron_retention CG17760 chr2R + chr2R_8513482_8514257 chr2R_8513481_8513482;chr2R_8514257_8514258 chr2R_8513465_8513481;chr2R_8514258_8514421 100.00 100.00 100.00 82.86 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Bsg25D,I_chr2L_5277665_5277933 chr2L - chr2L_5277181_5277933 chr2L_5277665_5277933 chr2L_5277934_5278033;chr2L_5276936_5277180 0.00 3.45 0.00 0.00 NA NA 2.50 0.00 2.27 NA NA 0.00 NA 0.00 4.55 0.00 4.17 NA NA 0.00 NA 4.88 0.00 4.35 NA NA 0.00 9.52 0.00 3.57 13.04 NA 0.00 0.00 8.70 0.00 5.56 4.35 0.00 7.32 0.00 0.00 NA 0.00 NA 0.00 0.00 8.00 0.00 NA 0.00 4.17 NA NA 0.00 NA NA NA N mutually_exclusive Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16107821_16109131,chr3L_16109720_16110644 chr3L_16107821_16108768,chr3L_16108931_16110644 chr3L_16109132_16109719 chr3L_16108769_16108930 chr3L_16107721_16107820;chr3L_16110645_16111208 100.00 100.00 NA 88.89 100.00 100.00 90.00 100.00 100.00 75.00 100.00 100.00 100.00 NA NA NA 100.00 NA NA 100.00 100.00 80.00 100.00 100.00 100.00 75.00 100.00 83.33 18.75 85.71 NA 75.00 85.71 100.00 80.00 93.75 95.83 100.00 91.67 85.71 85.71 100.00 100.00 88.89 85.71 83.33 NA 85.71 100.00 100.00 85.71 100.00 NA NA NA 100.00 NA 87.50 K intron_retention CG10616,RI_chr3L_12465584_12465646 chr3L + chr3L_12465030_12465121 chr3L_12465029_12465030;chr3L_12465121_12465122 chr3L_12464993_12465029;chr3L_12465122_12465296 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 0.00 2.44 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 1.61 7.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Dif,I_chr2L_17414333_17414528,I_chr2L_17418395_17418487 chr2L - chr2L_17415389_17417570 chr2L_17415388_17415389;chr2L_17417570_17417571 chr2L_17415348_17415388;chr2L_17417571_17417646 16.67 14.71 11.11 17.95 13.33 17.39 28.12 14.89 21.11 13.33 16.67 14.00 18.18 26.09 20.00 20.83 29.17 26.92 24.24 18.42 3.85 28.57 21.15 18.18 9.09 25.00 16.67 11.63 7.14 18.18 12.12 21.43 18.92 17.31 25.81 48.28 17.95 13.33 18.92 13.85 10.00 23.53 25.93 13.16 2.86 10.00 8.57 15.69 19.51 13.64 8.00 12.50 14.29 12.00 21.88 13.16 12.82 7.81 K jcn_only_AD vir-1,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,noncoding_2764,I_chr2L_12421830_12423260 chr2L - chr2L_12421830_12423322;chr2L_12421830_12423333;chr2L_12421830_12423278 chr2L_12421830_12423260 chr2L_12421816_12421829;chr2L_12423334_12423360 1.34 0.86 2.30 0.90 1.87 3.35 2.23 3.98 1.34 1.18 0.45 1.29 3.11 3.24 4.06 1.81 2.36 2.46 2.83 0.88 2.82 0.91 0.83 0.67 2.37 2.38 0.77 0.99 1.94 0.55 1.22 1.24 2.51 2.68 1.03 2.45 0.86 0.49 2.08 1.82 2.39 1.95 1.60 1.46 3.06 0.16 0.29 0.52 1.58 0.82 0.79 0.84 0.62 1.01 2.37 0.95 0.31 1.15 K intron_retention CG33129,I_chr2L_10966410_10967142,noncoding_2515,I_chr2L_10966622_10967108 chr2L - chr2L_10966622_10968133 chr2L_10966621_10966622;chr2L_10968133_10968134 chr2L_10966522_10966621;chr2L_10968134_10968152 3.68 6.25 11.36 5.88 0.00 8.00 7.69 6.25 3.20 NA 0.00 4.60 7.89 4.17 3.28 3.80 4.88 0.00 3.45 2.54 3.03 17.65 NA NA NA 6.25 NA NA 0.00 NA 0.00 8.70 0.00 4.94 NA NA NA NA NA NA 0.00 2.86 7.69 NA 0.00 0.00 NA 8.33 3.57 NA NA NA NA NA 5.77 NA 0.00 1.67 K alternative_donor I_chr3R_17177101_17200781,mod(mdg4),RI_chr3R_17178960_17179018 chr3R - chr3R_17178960_17200781 chr3R_17178960_17179018 chr3R_17178860_17178959;chr3R_17200782_17200881 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 K intron_retention CG6084 chr3L - chr3L_11613766_11614022 chr3L_11613765_11613766;chr3L_11614022_11614023 chr3L_11613759_11613765;chr3L_11614023_11614203 0.00 0.00 0.00 NA NA 0.00 6.06 2.80 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor PhKgamma,I_chrX_11589428_11589856,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11589297_11589856;chrX_11589418_11589856;chrX_11589428_11589856 chrX_11589313_11589856 chrX_11589857_11589956;chrX_11589195_11589296 80.62 70.00 87.50 76.92 NA 100.00 85.71 66.67 75.00 80.00 NA 69.23 NA 71.43 80.00 90.00 NA 83.33 100.00 92.86 NA 78.57 69.23 90.00 87.50 85.71 75.00 87.50 88.89 62.50 84.62 NA 55.56 75.00 85.71 57.14 63.64 80.00 66.67 75.00 NA 85.71 NA 76.47 72.73 75.00 NA 81.25 82.35 84.62 80.00 75.00 100.00 100.00 83.33 100.00 81.82 90.91 K intron_retention Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24348983_24349755 chr3R_24348982_24348983;chr3R_24349755_24349756 chr3R_24348417_24348982;chr3R_24349756_24349939 18.18 24.14 22.86 14.29 16.67 17.39 16.33 22.39 15.79 15.79 26.32 12.31 7.55 14.81 27.50 33.33 16.00 30.77 28.00 21.95 4.55 4.35 21.88 16.67 19.35 6.67 18.18 NA 16.00 NA 6.67 NA NA 27.50 NA 22.22 16.22 29.41 25.93 15.38 14.29 20.00 19.35 12.50 14.29 20.00 30.77 18.18 19.67 NA 17.39 NA 23.08 NA 17.24 30.00 37.04 21.43 K alternative_acceptor Zyx102EF,I_chr4_1078380_1078835,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1078666_1078835;chr4_1078778_1078835;chr4_1078782_1078835 chr4_1078644_1078835 chr4_1078836_1078848;chr4_1078433_1078643 0.00 0.00 0.00 2.22 0.00 0.00 0.00 2.17 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 1.85 0.00 5.88 0.00 0.00 5.88 0.00 0.00 0.00 0.00 K multi_cassette CG31522,I_chr3R_270285_272146,I_chr3R_270285_272461,I_chr3R_271138_271887,I_chr3R_272255_272359,RI_chr3R_273677_279264 chr3R - chr3R_270285_272461 chr3R_270285_271887;chr3R_271969_272146;chr3R_272255_272461 chr3R_271888_271968;chr3R_272147_272254 chr3R_270228_270284;chr3R_272462_272544 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 83.33 NA NA 100.00 100.00 NA 85.71 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA NA 100.00 100.00 80.00 100.00 100.00 100.00 100.00 NA 90.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA NA K intron_retention CaMKI,I_chr4_466377_467256,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,RI_chr4_467374_467424,RI_chr4_467482_467543,I_chr4_467862_471815,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_467273_467446 chr4_467272_467273;chr4_467446_467447 chr4_467266_467272;chr4_467447_467481 96.88 NA NA 90.00 NA NA 100.00 100.00 85.71 NA NA 100.00 NA 88.89 NA 90.00 NA NA 100.00 93.75 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 92.86 NA NA NA NA NA NA NA 90.91 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention CG9743,I_chr3R_26023404_26023481,RI_chr3R_26025392_26028528 chr3R - chr3R_26023404_26024215 chr3R_26023403_26023404;chr3R_26024215_26024216 chr3R_26023304_26023403;chr3R_26024216_26024616 15.75 20.65 16.98 14.95 22.95 19.05 12.75 14.84 20.53 10.71 32.35 18.75 9.09 20.51 20.65 19.17 21.67 17.33 30.65 11.64 28.12 9.29 14.02 14.40 10.00 11.11 18.52 20.14 11.32 12.84 20.43 10.69 8.37 15.75 17.44 14.13 16.67 18.48 14.47 11.49 8.61 19.74 16.95 10.40 4.73 10.42 17.20 11.56 16.67 16.84 15.62 15.29 13.33 15.79 19.54 15.05 15.79 10.00 K intron_retention CG1161,I_chr3R_1182079_1182146 chr3R + chr3R_1181665_1181724 chr3R_1181664_1181665;chr3R_1181724_1181725 chr3R_1181556_1181664;chr3R_1181725_1181850 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG5953,snoRNA:Me28S-C1237 chr2L - chr2L_16528440_16532720;chr2L_16528440_16532458 chr2L_16528440_16532707 chr2L_16527390_16528439;chr2L_16532721_16532862 11.11 NA 9.09 NA NA NA 14.29 10.53 12.00 NA 13.33 0.00 NA NA 0.00 6.67 NA NA 14.29 11.11 4.35 NA 20.00 NA NA NA 11.11 25.00 NA 0.00 0.00 NA NA 14.29 10.53 NA NA NA 7.69 23.08 NA 7.41 11.11 16.67 NA 8.33 21.43 16.00 10.00 NA 18.18 NA NA 12.50 NA 0.00 NA 12.50 K alternative_donor I_chr2R_7171366_7171418,fbl6,dare chr2R - chr2R_7176066_7176897;chr2R_7176066_7176572 chr2R_7176066_7177174 chr2R_7175150_7176065;chr2R_7177175_7177253 0.00 0.00 5.26 2.94 0.00 5.88 0.00 0.00 2.63 9.09 0.00 0.00 0.00 7.14 5.00 7.41 0.00 0.00 8.70 2.27 0.00 0.00 0.00 0.00 7.69 7.14 4.35 0.00 0.00 0.00 5.26 0.00 0.00 3.45 0.00 0.00 0.00 6.67 0.00 0.00 11.11 0.00 7.14 5.88 0.00 0.00 0.00 0.00 2.56 0.00 4.35 0.00 0.00 0.00 3.70 0.00 0.00 8.33 K cassette sqd,I_chr3R_9462248_9471474,I_chr3R_9468150_9468236,I_chr3R_9470417_9471474 chr3R - chr3R_9468932_9471474 chr3R_9468932_9470080;chr3R_9470293_9471474 chr3R_9470081_9470292 chr3R_9468891_9468931;chr3R_9471475_9471574 9.47 3.76 12.24 12.36 10.42 9.52 12.63 16.67 8.72 5.11 8.00 12.67 NA 10.53 15.87 20.00 14.29 16.95 20.00 13.60 10.91 3.91 5.25 5.59 3.23 20.41 7.80 11.52 8.82 8.02 45.05 10.20 12.85 14.43 4.67 7.04 3.90 6.21 4.55 8.11 9.18 9.62 15.91 7.22 12.07 9.43 4.58 13.21 15.54 4.60 4.93 3.73 9.17 4.12 14.29 4.90 4.81 24.24 K intron_retention CG7110,CR_chr2L_13405706_13410507 chr2L + chr2L_13399652_13403223 chr2L_13399651_13399652;chr2L_13403223_13403224 chr2L_13399561_13399651;chr2L_13403224_13403355 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.04 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K cassette CG8949,RI_chrX_16967645_16970957,I_chrX_16971501_16971713 chrX - chrX_16967645_16970957 chrX_16967645_16969985;chrX_16970023_16970957 chrX_16969986_16970022 chrX_16967545_16967644;chrX_16970958_16971057 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 93.33 100.00 100.00 93.33 100.00 100.00 95.24 93.33 100.00 100.00 100.00 100.00 93.75 93.33 95.83 94.44 100.00 100.00 100.00 89.29 100.00 95.24 100.00 96.55 100.00 100.00 95.65 96.88 100.00 97.37 100.00 87.50 97.37 93.75 100.00 100.00 95.00 93.75 100.00 97.56 88.00 96.97 100.00 95.24 100.00 96.43 100.00 94.12 100.00 K intron_retention elav chrX - chrX_413276_415472 chrX_413275_413276;chrX_415472_415473 chrX_409684_413275;chrX_415473_415702 10.53 NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA NA NA NA 20.00 14.29 NA NA NA NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG3967,RI_chr3L_9408567_9410728,RI_chr3L_9412100_9412179 chr3L - chr3L_9407866_9408507 chr3L_9408397_9408507 chr3L_9408508_9408566;chr3L_9407481_9407865 97.87 NA NA 97.56 NA NA 96.00 97.14 97.87 NA NA 100.00 NA 100.00 100.00 NA NA NA NA 96.88 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 95.83 NA NA NA NA NA 100.00 NA 96.88 100.00 NA NA NA NA 95.00 96.43 NA 100.00 NA NA NA 100.00 NA 95.24 100.00 K jcn_only_AA aPKC,I_chr2R_10833552_10833654,RI_chr2R_10849347_10850391 chr2R - chr2R_10833552_10833654;chr2R_10832733_10833654 chr2R_10833596_10833654 chr2R_10833655_10833754;chr2R_10832714_10832732 100.00 100.00 100.00 96.23 NA NA 100.00 100.00 95.74 NA NA 97.22 100.00 100.00 NA 96.67 NA 95.00 NA 98.25 100.00 98.51 97.96 95.45 100.00 NA 97.14 NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 95.65 97.62 NA 96.88 NA 100.00 100.00 96.30 100.00 100.00 98.31 100.00 96.77 100.00 NA 100.00 100.00 100.00 K intron_retention cno,I_chr3R_999718_999986,I_chr3R_999737_999777,RI_chr3R_1009937_1010000 chr3R - chr3R_1008608_1009498 chr3R_1008607_1008608;chr3R_1009498_1009499 chr3R_1008441_1008607;chr3R_1009499_1009705 5.56 9.80 8.16 10.20 8.82 6.06 5.48 8.62 4.46 2.56 11.54 7.78 6.82 10.26 5.56 10.00 0.00 7.69 12.20 4.81 0.00 1.83 3.12 4.30 2.86 6.82 5.38 4.88 2.70 4.17 11.76 8.00 1.64 5.19 6.12 3.70 4.21 7.81 3.96 2.08 3.03 4.76 10.00 4.88 5.71 11.11 7.84 3.53 5.88 2.82 3.81 0.00 9.68 11.54 7.69 12.50 14.29 4.55 K multi_cassette Rpb4 chr3R - chr3R_14079178_14081038 chr3R_14079178_14079247;chr3R_14079515_14079574;chr3R_14080039_14080096;chr3R_14080814_14081038 chr3R_14079248_14079514;chr3R_14079575_14080038;chr3R_14080097_14080813 chr3R_14078997_14079177;chr3R_14081039_14081173 40.00 44.44 35.71 40.00 50.00 50.00 77.78 38.89 42.86 42.86 50.00 38.10 40.00 44.44 41.67 43.75 36.36 41.67 80.00 54.55 36.36 63.64 27.27 33.33 30.00 36.36 30.00 62.50 63.64 41.67 63.16 30.43 40.00 47.06 35.71 33.33 70.00 55.56 50.00 42.86 46.15 30.77 30.00 60.00 69.23 26.92 37.50 56.25 34.62 28.57 36.36 40.00 26.67 33.33 45.45 21.74 33.33 36.67 K cassette CG9646 chr2R + chr2R_12938670_12940773 chr2R_12938670_12939326;chr2R_12940650_12940773 chr2R_12939327_12940649 chr2R_12938230_12938669;chr2R_12940774_12940923 85.00 81.54 86.21 75.95 83.33 81.25 84.16 89.19 87.39 82.05 84.09 85.56 78.38 90.48 87.10 85.29 76.60 88.00 86.27 89.92 89.13 87.65 81.32 86.00 85.00 85.42 86.00 88.10 83.97 85.57 85.00 74.49 90.07 86.75 86.57 71.76 83.18 81.33 82.18 78.91 72.64 82.41 86.84 84.26 77.68 78.10 89.87 79.63 85.26 76.64 79.83 86.44 90.91 87.30 81.54 82.72 89.41 81.11 N cassette Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16107821_16110644;chr3L_16107821_16109131 chr3L_16107821_16108768;chr3L_16108931_16109131,chr3L_16108931_16110644 chr3L_16108769_16108930 chr3L_16107721_16107820;chr3L_16110645_16111208 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.41 100.00 100.00 100.00 100.00 100.00 100.00 89.52 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention M(2)21AB,I_chr2L_110878_111037,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_111118_111906 chr2L_111117_111118;chr2L_111906_111907 chr2L_111104_111117;chr2L_111907_112019 86.06 NA NA NA NA NA 88.24 84.62 83.33 NA NA 83.33 88.89 NA NA 90.91 NA 63.64 NA 92.31 NA NA 63.64 69.23 100.00 NA 83.33 NA NA NA 54.55 NA NA 76.92 NA NA 88.89 NA 88.89 90.00 NA 90.91 NA 80.00 NA NA NA NA 88.89 70.00 87.50 NA NA NA 80.00 88.89 NA NA K jcn_only_AD kuz,F_chr2L_13635998_13637287,I_chr2L_13636762_13637287 chr2L + chr2L_13636844_13637287;chr2L_13636002_13637287 chr2L_13636762_13637287 chr2L_13637288_13637387 8.45 4.63 14.14 6.99 0.00 6.94 7.53 3.66 7.10 6.17 19.12 16.45 5.08 9.09 7.89 10.62 3.17 14.44 7.14 10.44 18.28 5.88 8.47 5.69 11.96 14.29 11.34 9.59 13.86 8.33 12.68 10.17 25.44 3.88 2.20 15.45 8.47 9.91 3.07 7.62 16.88 5.18 8.70 4.20 9.68 11.27 8.45 18.00 3.64 10.71 6.86 2.78 9.20 3.08 1.49 3.70 3.60 14.29 K jcn_only_AD I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,I_chr3R_17190098_17190207 chr3R - chr3R_17190098_17200781 chr3R_17190098_17190172 chr3R_17189998_17190097 29.59 NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA 26.92 NA NA NA NA NA NA NA NA NA NA NA NA 23.81 NA NA NA 23.81 NA 19.05 32.26 NA 50.00 NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG8128,I_chrX_15591697_15591816 chrX + chrX_15591697_15591816;chrX_15591697_15592065 chrX_15591697_15592355 chrX_15591597_15591696;chrX_15592356_15592720 84.16 83.33 89.47 77.78 NA 87.50 65.22 86.67 81.48 88.89 57.14 75.86 62.50 83.33 90.48 81.25 87.50 80.95 82.35 81.25 94.44 75.00 86.21 86.11 70.00 75.00 83.33 87.50 85.71 88.89 80.95 82.61 87.10 85.19 85.71 81.82 76.00 80.77 87.18 88.89 72.22 81.08 87.50 80.95 77.78 85.00 85.71 86.96 82.35 77.27 90.24 90.91 86.67 86.67 80.95 85.19 87.50 93.55 K alternative_donor CG4699 chr3R + chr3R_11619752_11620550;chr3R_11619772_11620550;chr3R_11619570_11620550;chr3R_11619776_11620550 chr3R_11619676_11620550 chr3R_11620551_11621301;chr3R_11619539_11619569 74.07 55.56 80.00 78.57 66.67 72.22 68.75 85.71 71.11 30.00 63.16 84.44 77.27 72.73 75.86 87.76 78.95 84.62 74.07 69.39 77.78 78.26 72.73 71.43 60.00 77.42 78.57 62.50 78.57 61.11 81.82 100.00 64.29 70.00 84.21 81.25 63.16 85.71 81.25 72.00 66.67 71.79 76.92 70.59 77.78 64.29 85.71 62.96 82.35 53.85 77.78 78.95 90.00 57.14 82.61 72.73 66.67 58.33 K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27761114_27762991,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27707594_27784756 chr3R_27707594_27747354;chr3R_27747397_27757793;chr3R_27758337_27784756 chr3R_27747355_27747396;chr3R_27757794_27758336 chr3R_27707494_27707593;chr3R_27784757_27784846 0.00 NA NA 4.55 0.00 NA 0.00 0.00 2.50 NA 0.00 2.78 0.00 4.17 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 10.00 4.00 0.00 NA 0.00 0.00 NA 0.00 5.56 0.00 0.00 3.45 NA 0.00 0.00 3.23 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 7.69 0.00 4.35 K intron_retention CG8578 chrX + chrX_15738565_15739359 chrX_15738564_15738565;chrX_15739359_15739360 chrX_15738549_15738564;chrX_15739360_15739501 0.00 NA NA NA NA NA 0.00 NA 8.57 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA 7.14 NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention CG8408 chrX - chrX_17519692_17520972 chrX_17519691_17519692;chrX_17520972_17520973 chrX_17519563_17519691;chrX_17520973_17521273 1.52 1.54 0.65 1.91 1.68 0.78 2.11 1.35 1.39 0.00 3.74 1.83 2.13 4.08 1.76 1.89 3.54 1.67 0.61 1.95 1.45 2.96 0.00 1.63 3.41 0.69 5.10 5.32 1.85 1.65 0.00 0.00 1.45 1.84 2.35 3.96 1.67 1.52 1.17 1.31 0.96 2.20 0.00 0.00 0.00 1.35 0.00 0.00 1.67 0.81 2.17 1.00 1.04 0.00 2.89 0.00 1.25 0.00 K alternative_donor CG33298 chr2L + chr2L_9495712_9503592;chr2L_9496256_9503592 chr2L_9495657_9503592 chr2L_9503593_9504813;chr2L_9495488_9495656 8.33 12.50 18.18 4.76 25.00 20.00 4.35 7.69 3.33 NA 16.67 0.00 12.50 7.14 10.00 10.34 8.33 0.00 11.11 6.25 27.27 10.00 14.29 0.00 0.00 0.00 0.00 0.00 25.00 20.00 0.00 NA 0.00 21.43 0.00 0.00 0.00 0.00 25.00 10.00 25.00 15.38 9.09 0.00 NA 0.00 NA 16.67 8.33 0.00 14.29 20.00 NA NA 15.38 NA 0.00 0.00 K alternative_donor PhKgamma,I_chrX_11589428_11589856,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11589418_11589856;chrX_11589428_11589856;chrX_11589313_11589856 chrX_11589297_11589856 chrX_11589857_11589956;chrX_11589195_11589296 0.00 10.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 10.00 10.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 14.29 0.00 0.00 0.00 0.00 5.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG16833,I_chr2L_10994022_10994325,I_chr2L_10994919_10997334 chr2L + chr2L_10989875_10991058 chr2L_10989874_10989875;chr2L_10991058_10991059 chr2L_10989656_10989874;chr2L_10991059_10991885 13.33 NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD dorsal,RI_chr2L_17438018_17439189,FI_chr2L_17449369_17450215,noncoding_3500,RI_chr2L_17450002_17450219 chr2L - chr2L_17449369_17450325;chr2L_17449369_17450219;chr2L_17449369_17450310;chr2L_17449369_17450215 chr2L_17449369_17449875 chr2L_17449296_17449368;chr2L_17450326_17450359 11.27 20.00 14.63 14.56 17.14 6.58 21.28 11.30 12.41 13.64 16.67 5.48 5.36 10.77 2.50 13.94 20.45 9.09 22.08 5.68 12.50 11.11 13.00 18.52 2.78 10.00 10.42 22.73 13.39 9.90 5.97 8.33 5.83 13.33 4.00 12.16 24.14 22.58 9.09 13.14 14.05 8.66 10.87 9.68 9.52 11.11 8.57 11.27 13.42 15.79 13.33 8.45 7.89 1.72 5.21 7.46 21.43 11.46 K intron_retention CG7816,RI_chr3R_25691122_25694436 chr3R - chr3R_25690549_25690610 chr3R_25690548_25690549;chr3R_25690610_25690611 chr3R_25690135_25690548;chr3R_25690611_25690712 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.56 3.17 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.29 0.00 0.00 0.00 0.00 0.93 1.23 1.85 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 1.12 0.56 0.69 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 2.15 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.52 K multi_cassette Rcd1 chr2R - chr2R_10037324_10037730 chr2R_10037324_10037392;chr2R_10037459_10037540;chr2R_10037601_10037730 chr2R_10037393_10037458;chr2R_10037541_10037600 chr2R_10036739_10037323;chr2R_10037731_10037959 0.00 3.23 0.00 0.00 0.00 4.00 0.00 0.00 0.00 NA 0.00 6.25 2.63 0.00 2.86 0.00 3.70 0.00 0.00 1.30 0.00 6.67 0.00 2.86 0.00 0.00 2.70 6.67 0.00 0.00 0.00 0.00 5.26 2.13 0.00 0.00 2.70 3.85 3.12 2.63 7.14 3.17 0.00 3.33 6.67 0.00 0.00 5.88 1.82 2.22 3.23 0.00 0.00 0.00 2.38 4.35 0.00 0.00 N multi_cassette Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16107821_16109131 chr3L_16107821_16107893;chr3L_16107944_16108768;chr3L_16108931_16109131 chr3L_16107894_16107943;chr3L_16108769_16108930 chr3L_16107721_16107820;chr3L_16109132_16109341 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 76.09 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2395659 chrX_2388671_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2393243;chrX_2393712_2395659 chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664;chrX_2393244_2393711 chrX_2388641_2388670;chrX_2395660_2395759 25.00 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD pAbp,I_chr2R_14027838_14028996 chr2R + chr2R_14028922_14028996;chr2R_14028460_14028996 chr2R_14028464_14028996 chr2R_14028997_14029096;chr2R_14028264_14028459 36.52 NA NA 54.29 NA NA NA 56.10 30.00 NA NA 33.33 NA NA NA 34.62 NA NA NA 41.67 NA 35.29 44.00 NA NA NA 31.03 36.67 34.62 NA NA NA 59.26 47.83 NA NA 26.47 NA NA 64.10 NA 36.36 NA 44.83 NA NA NA NA NA NA NA NA NA NA NA NA 23.81 NA K cassette CG8079 chr2R + chr2R_11109486_11110001 chr2R_11109486_11109548;chr2R_11109931_11110001 chr2R_11109549_11109930 chr2R_11109446_11109485;chr2R_11110002_11110367 96.00 93.33 92.86 100.00 100.00 100.00 80.95 89.29 97.06 100.00 100.00 96.97 93.33 93.33 94.74 95.65 91.67 94.12 100.00 97.62 100.00 95.83 100.00 95.83 91.67 93.33 95.65 100.00 95.24 94.12 96.00 100.00 100.00 96.30 100.00 81.82 95.00 94.44 95.45 94.12 95.24 93.75 100.00 100.00 100.00 89.66 100.00 96.97 96.43 100.00 96.30 94.12 93.75 86.67 100.00 100.00 100.00 100.00 K intron_retention CG17180,RI_chr3L_548068_552227 chr3L + chr3L_541960_542016 chr3L_541959_541960;chr3L_542016_542017 chr3L_541485_541959;chr3L_542017_542147 6.67 0.00 6.67 13.04 NA 0.00 8.33 16.67 19.05 NA NA 20.00 NA NA NA 13.79 NA NA 15.00 16.67 NA 5.26 4.35 6.45 0.00 6.67 15.62 12.50 0.00 NA 5.88 3.33 9.09 20.00 0.00 0.00 0.00 0.00 5.13 7.41 0.00 13.79 NA 8.00 7.41 6.67 10.71 NA 16.67 5.26 9.68 0.00 4.35 0.00 4.55 6.45 6.67 7.69 K alternative_acceptor Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8461584_8461646 chr3L_8461584_8461643 chr3L_8461439_8461583;chr3L_8461647_8461804 55.56 72.73 45.45 51.85 NA 55.56 NA 63.64 55.56 NA NA 55.00 NA 55.56 66.67 NA NA 50.00 66.67 53.12 NA 61.54 54.55 69.23 61.54 NA NA NA 52.63 64.71 NA 66.67 50.00 52.63 75.00 57.89 43.48 50.00 46.15 60.87 NA 55.56 NA 47.06 58.82 68.75 NA 69.57 52.94 NA 56.25 40.00 NA NA 46.15 NA NA 68.42 K intron_retention I_chr3R_25875159_25875219,CG7946,CG15526 chr3R + chr3R_25880202_25880265 chr3R_25880201_25880202;chr3R_25880265_25880266 chr3R_25880132_25880201;chr3R_25880266_25880420 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 98.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 93.33 100.00 97.56 95.83 100.00 98.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.89 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 K intron_retention CG3714,I_chr2L_4190825_4191774,I_chr2L_4192178_4192632,I_chr2L_4195905_4196470,RI_chr2L_4196780_4197951 chr2L - chr2L_4190493_4190558 chr2L_4190492_4190493;chr2L_4190558_4190559 chr2L_4190083_4190492;chr2L_4190559_4190824 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.75 1.46 0.28 0.00 0.00 0.56 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 K jcn_only_AD CG42507,Trl,EI_chr3L_14750431_14750893,I_chr3L_14750431_14750985,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14750431_14750941;chr3L_14750431_14751007;chr3L_14750431_14750893;chr3L_14750431_14750583 chr3L_14750431_14750762 chr3L_14750331_14750430;chr3L_14751008_14751008 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 K intron_retention Nplp2,I_chr3L_13349726_13349896 chr3L + chr3L_13349953_13350119 chr3L_13349952_13349953;chr3L_13350119_13350120 chr3L_13349897_13349952;chr3L_13350120_13350349 99.82 99.83 100.00 99.79 99.75 100.00 99.89 99.81 99.64 100.00 99.73 99.70 99.72 99.87 99.89 99.76 99.54 99.87 99.91 99.87 99.13 100.00 100.00 99.44 99.53 99.80 99.58 94.31 100.00 100.00 99.89 100.00 100.00 99.79 100.00 100.00 99.22 99.38 100.00 99.90 99.79 99.82 99.73 99.63 100.00 99.72 99.71 99.85 99.84 100.00 100.00 99.49 99.54 99.67 99.83 99.73 99.79 100.00 K intron_retention cno,I_chr3R_999718_999986,I_chr3R_999737_999777,RI_chr3R_1009937_1010000 chr3R - chr3R_1009937_1010000 chr3R_1009936_1009937;chr3R_1010000_1010001 chr3R_1009837_1009936;chr3R_1010001_1010100 9.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA NA K cassette didum,I_chr2R_3393005_3393348 chr2R + chr2R_3390534_3391153 chr2R_3390534_3390676;chr2R_3390701_3391153 chr2R_3390677_3390700 chr2R_3390307_3390533;chr2R_3391154_3391267 36.36 30.00 38.10 56.25 29.63 31.82 28.57 52.17 37.25 37.50 13.64 28.00 72.73 43.75 33.33 52.17 44.44 27.27 47.83 45.00 47.06 52.94 35.48 31.03 53.33 33.33 29.17 NA 16.67 35.00 19.23 NA 36.36 48.28 40.00 46.15 48.48 39.13 39.13 13.33 NA 38.46 35.71 46.67 36.36 NA 36.36 29.41 50.00 25.00 31.03 66.67 28.57 36.36 60.00 36.36 38.46 35.71 K jcn_only_AA CG14222,I_chrX_19515684_19515800,I_chrX_19515698_19515809,e(y)3 chrX - chrX_19515684_19515809 chrX_19515698_19515809 chrX_19515810_19515900;chrX_19515598_19515683 0.98 1.33 1.16 1.90 2.27 0.00 0.87 1.25 1.09 0.00 0.00 2.90 1.56 0.00 3.26 0.00 0.00 2.44 0.98 0.00 4.76 0.00 1.12 0.00 0.00 0.00 1.23 7.32 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 1.54 1.82 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 2.08 1.16 4.03 1.43 2.17 1.18 1.08 0.98 1.90 1.38 1.82 K intron_retention CG9674,E_chr3L_16781559_16783017,I_chr3L_16785706_16785748,I_chr3L_16793055_16800660 chr3L - chr3L_16782421_16782558 chr3L_16782420_16782421;chr3L_16782558_16782559 chr3L_16781762_16782420;chr3L_16782559_16784043 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.75 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor hppy,I_chr2R_15066378_15066915,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15066304_15067003;chr2R_15066378_15067003;chr2R_15066243_15067003 chr2R_15066358_15067003 chr2R_15067004_15067015;chr2R_15066237_15066242 0.00 16.67 0.00 9.09 25.00 0.00 5.88 8.33 0.00 20.00 20.00 0.00 14.29 9.09 0.00 0.00 0.00 0.00 0.00 0.00 20.00 0.00 0.00 16.67 0.00 0.00 0.00 16.67 9.09 0.00 7.14 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.67 0.00 0.00 11.11 0.00 NA 16.67 20.00 0.00 0.00 K intron_retention CG18228,RpA-70 chr3R - chr3R_4088396_4088474 chr3R_4088395_4088396;chr3R_4088474_4088475 chr3R_4087696_4088395;chr3R_4088475_4089693 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rab-RP4,RI_chrX_5565547_5565601 chrX - chrX_5565050_5565113 chrX_5565049_5565050;chrX_5565113_5565114 chrX_5564637_5565049;chrX_5565114_5565546 0.00 0.00 0.00 0.61 0.00 0.00 0.00 1.16 0.55 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 2.67 1.77 0.00 0.00 0.00 0.00 1.95 0.00 0.00 1.35 1.49 0.00 1.32 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CkIalpha,I_chrX_12548371_12549203,I_chrX_12548704_12549203,I_chrX_12548772_12549203 chrX + chrX_12548202_12549203;chrX_12547919_12549203 chrX_12548131_12549203 chrX_12549204_12549210;chrX_12547852_12547918 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG2199,RI_chr3L_1345162_1345493 chr3L - chr3L_1341862_1341927 chr3L_1341861_1341862;chr3L_1341927_1341928 chr3L_1339457_1341861;chr3L_1341928_1342069 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 1.41 0.00 0.00 0.00 5.56 0.00 0.00 0.00 6.45 13.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.67 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG10747,RI_chr2L_20090945_20090997 chr2L - chr2L_20090940_20090997 chr2L_20090945_20090997 chr2L_20090998_20091097;chr2L_20090845_20090939 10.53 15.00 NA 4.35 NA NA NA 3.57 20.00 NA NA 7.69 NA NA NA 7.14 NA NA NA 9.38 NA NA 5.00 NA NA NA NA NA NA NA 30.77 NA NA 10.71 NA NA NA NA NA NA NA 10.34 NA NA NA NA NA NA 19.44 20.00 NA NA NA NA 18.18 NA NA NA K intron_retention CE_chrX_20766225_20927825,CG1518 chrX - chrX_20924254_20924637 chrX_20924253_20924254;chrX_20924637_20924638 chrX_20923925_20924253;chrX_20924638_20925143 1.59 0.00 2.17 1.22 1.19 0.89 2.13 1.23 2.15 1.45 0.00 1.84 2.30 1.68 1.38 1.05 2.70 1.12 2.65 0.88 1.15 3.20 2.24 3.74 5.68 0.00 3.03 1.57 1.41 0.00 2.58 0.00 1.28 1.59 0.00 2.25 2.17 2.44 1.63 3.72 1.54 1.40 1.94 4.76 1.03 2.46 0.00 0.53 2.29 3.12 1.96 3.03 3.28 0.00 1.32 0.00 1.82 1.48 K intron_retention AP-1sigma,I_chr3R_19786283_19787772 chr3R + chr3R_19785316_19785614 chr3R_19785315_19785316;chr3R_19785614_19785615 chr3R_19785178_19785315;chr3R_19785615_19785954 100.00 100.00 96.55 98.67 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG9578 chrX + chrX_20064792_20064878 chrX_20064791_20064792;chrX_20064878_20064879 chrX_20064457_20064791;chrX_20064879_20065098 0.00 6.67 0.00 NA NA NA NA NA 0.00 NA NA 7.14 NA NA 0.00 NA NA NA NA 13.64 NA NA 0.00 0.00 NA 7.14 NA 7.69 6.67 NA NA 17.65 0.00 0.00 NA NA 9.52 NA 0.00 6.25 0.00 3.45 NA 0.00 0.00 0.00 NA 10.71 NA NA NA NA NA NA NA NA 0.00 0.00 K intron_retention CG3499,I_chr2R_18772777_18772819 chr2R - chr2R_18771349_18771423 chr2R_18771348_18771349;chr2R_18771423_18771424 chr2R_18770341_18771348;chr2R_18771424_18771814 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 K jcn_only_AD CG14614,RI_chrX_21856027_21856279,REI_chrX_21856047_21856229,RI_chrX_21856896_21857109 chrX - chrX_21856027_21856279 chrX_21856027_21856229 chrX_21855947_21856026;chrX_21856280_21856329 98.63 97.30 99.42 97.45 98.97 97.33 97.58 99.09 98.16 100.00 100.00 98.88 100.00 98.48 99.39 98.61 98.25 100.00 98.70 100.00 96.09 99.25 99.41 100.00 98.21 99.30 98.33 96.33 97.44 97.89 98.40 98.63 98.95 100.00 98.29 97.40 99.28 98.20 98.10 98.75 100.00 98.11 97.62 99.32 98.15 98.56 98.31 99.49 98.93 96.55 98.54 100.00 100.00 100.00 99.43 97.85 98.36 98.82 K alternative_acceptor I_chr2L_4834257_4835246,CG15626,I_chr2L_4837691_4837844,I_chr2L_4837780_4837844 chr2L - chr2L_4837691_4837844;chr2L_4837780_4837844 chr2L_4837640_4837844 chr2L_4837845_4837944;chr2L_4837602_4837639 78.12 80.56 83.87 73.02 74.07 80.77 64.86 76.19 83.54 77.27 87.10 75.93 82.50 89.29 80.49 88.89 73.08 92.11 81.82 85.71 80.56 72.09 76.79 73.53 60.00 73.53 65.00 60.61 72.00 85.71 78.79 80.77 75.00 71.43 79.17 60.00 82.61 81.08 83.67 69.44 50.00 80.30 73.08 83.78 65.52 76.92 84.85 72.22 78.79 77.42 66.67 70.83 85.71 65.22 79.41 78.12 83.72 80.95 K intron_retention Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11823830_11823896 chr2R_11823829_11823830;chr2R_11823896_11823897 chr2R_11823822_11823829;chr2R_11823897_11824085 99.42 100.00 98.44 99.15 100.00 97.62 99.25 98.54 99.42 100.00 97.92 98.32 98.77 100.00 98.57 99.24 100.00 100.00 98.80 99.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.39 100.00 98.48 97.53 98.25 98.25 99.25 100.00 97.83 100.00 100.00 97.83 98.78 100.00 99.15 98.57 100.00 98.00 98.15 100.00 98.85 99.26 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 K alternative_donor CG9350 chr2R + chr2R_16912652_16912845 chr2R_16912666_16912845 chr2R_16912846_16913108;chr2R_16912583_16912651 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.48 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K jcn_only_AA CG6115 chr2L - chr2L_16887672_16887792 chr2L_16887678_16887792 chr2L_16887793_16887941;chr2L_16887122_16887671 99.59 99.36 99.46 99.50 99.49 99.40 98.62 99.53 99.22 100.00 99.47 99.41 98.94 100.00 99.72 99.76 100.00 99.32 100.00 99.16 99.62 99.52 99.40 100.00 100.00 99.37 99.72 98.28 98.39 100.00 99.79 100.00 100.00 99.78 100.00 100.00 99.21 99.70 100.00 100.00 100.00 99.62 99.58 98.99 99.61 99.51 99.33 99.31 99.49 99.70 99.59 99.24 99.72 99.81 100.00 100.00 99.57 99.16 K jcn_only_AD CG3114,RI_chrX_168562_168685 chrX - chrX_167426_167502 chrX_167426_167493 chrX_167216_167425;chrX_167503_168561 9.45 NA 9.52 28.12 NA 7.69 NA 9.38 15.22 NA NA 4.76 NA NA NA 26.67 NA 29.63 4.35 9.26 NA 0.00 6.25 NA NA NA 19.23 NA 11.11 0.00 0.00 24.00 17.78 6.45 4.35 10.34 6.90 NA 19.35 15.52 NA 2.86 NA NA 25.00 8.00 NA 10.53 3.45 NA 10.00 NA NA NA 8.33 NA NA 17.39 K alternative_acceptor Rpp30,I_chr2L_258887_271628 chr2L - chr2L_251442_251526 chr2L_251465_251526 chr2L_251527_251593;chr2L_251376_251441 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA 91.67 NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA 100.00 90.00 NA NA NA NA NA NA 94.12 100.00 N intron_retention CG13551,I_chr2R_19265701_19270570 chr2R - chr2R_19270504_19270570 chr2R_19270503_19270504;chr2R_19270570_19270571 chr2R_19269032_19270503;chr2R_19270571_19270645 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 65.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA K jcn_only_AA CG12375 chr2L - chr2L_8126693_8126756 chr2L_8126699_8126756 chr2L_8126757_8126897;chr2L_8125668_8126692 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor ZnT63C chr3L + chr3L_3303853_3304601;chr3L_3303837_3304601 chr3L_3304022_3304601 chr3L_3304602_3304665;chr3L_3303742_3303836 4.80 6.56 4.76 5.26 1.61 3.90 3.49 7.69 3.92 3.51 4.55 15.54 12.24 7.25 7.50 4.80 1.67 4.35 4.00 7.30 3.45 2.63 4.59 4.76 10.53 6.67 8.70 8.33 8.33 8.20 4.90 6.98 16.98 4.51 5.75 8.06 5.81 6.45 5.17 5.56 8.20 5.33 3.28 4.08 2.00 4.35 3.08 4.17 5.08 3.45 4.42 3.16 2.17 2.56 5.21 4.35 3.64 6.59 K intron_retention CG12655,I_chrX_19852934_19853195 chrX - chrX_19852934_19853333 chrX_19852933_19852934;chrX_19853333_19853334 chrX_19852834_19852933;chrX_19853334_19853626 0.56 0.37 0.00 1.62 0.00 0.00 0.97 0.44 0.69 1.24 0.00 1.31 2.41 0.56 0.49 1.15 2.16 0.00 0.00 0.54 0.00 2.75 0.62 0.00 1.34 0.00 2.01 0.00 2.14 0.00 0.92 1.41 1.06 1.93 0.00 1.53 0.55 0.96 0.25 1.93 0.00 0.27 0.00 0.48 0.00 0.80 1.02 1.13 0.30 0.62 0.97 0.78 0.00 0.00 1.50 0.28 0.00 1.48 K intron_retention mura,RI_chr3R_5373093_5377292,I_chr3R_5375533_5376618,RI_chr3R_5380786_5380850 chr3R - chr3R_5365198_5365540 chr3R_5365197_5365198;chr3R_5365540_5365541 chr3R_5365085_5365197;chr3R_5365541_5365725 0.00 NA 0.00 2.13 7.14 0.00 0.00 0.00 3.23 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 3.33 0.00 NA 0.00 0.00 NA 2.94 0.00 0.00 NA 10.53 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 K cassette kuz,E_chr2L_13550294_13551106,CE_chr2L_13558833_13594255,F_chr2L_13635998_13637287,RI_chr2L_13636519_13636577,I_chr2L_13636762_13637287 chr2L + chr2L_13636214_13637287 chr2L_13636214_13636383;chr2L_13636844_13637287 chr2L_13636384_13636843 chr2L_13636100_13636213;chr2L_13637288_13637387 85.39 79.55 92.45 94.61 57.14 53.85 85.39 86.49 83.33 87.14 74.65 98.53 86.96 92.68 78.26 98.23 75.61 93.67 80.95 97.71 81.43 74.60 71.43 69.23 82.61 92.11 85.71 86.79 91.95 97.53 96.08 90.70 93.48 83.82 82.22 96.26 66.67 69.77 73.21 95.89 98.39 78.41 100.00 91.23 95.65 96.08 70.97 97.78 74.12 77.42 69.57 81.82 75.51 78.26 87.18 62.50 80.00 96.39 K jcn_only_AD CG4165,I_chrX_5317784_5317881,I_chrX_5321743_5321838 chrX + chrX_5316313_5316612;chrX_5316300_5316612;chrX_5315965_5316612 chrX_5316160_5316612 chrX_5316613_5317050;chrX_5315939_5315964 65.22 73.91 NA 71.43 NA NA NA 62.50 69.57 NA NA 70.59 NA NA 80.95 NA NA 69.23 86.36 62.96 NA 52.94 81.82 NA NA NA 65.22 NA NA 54.17 NA NA 36.67 60.00 54.55 70.00 58.06 NA 51.85 62.96 NA 79.31 NA NA NA NA NA NA 73.17 NA 59.38 NA NA NA NA NA NA NA K intron_retention noncoding_4261 chr2L + chr2L_21930695_21930816 chr2L_21930694_21930695;chr2L_21930816_21930817 chr2L_21930327_21930694;chr2L_21930817_21930947 8.22 8.22 8.60 23.15 16.67 14.52 9.95 11.63 10.95 8.22 8.00 12.77 11.36 11.11 11.43 7.41 10.94 9.38 6.32 7.04 9.38 7.89 4.24 5.36 4.35 6.45 8.06 19.42 10.56 4.81 7.87 8.49 8.05 6.29 6.52 11.54 9.00 6.52 7.63 9.52 9.78 9.86 5.77 3.94 11.02 6.55 8.86 10.05 6.99 4.23 6.67 7.92 6.90 5.49 7.48 6.03 11.73 14.29 K intron_retention CG30339,I_chr2R_5496948_5497550,F_chr2R_5549824_5554869 chr2R - chr2R_5487948_5488006 chr2R_5487947_5487948;chr2R_5488006_5488007 chr2R_5487416_5487947;chr2R_5488007_5488636 0.00 NA NA NA NA NA 2.44 5.56 16.00 NA NA 4.76 NA NA 0.00 0.00 NA 0.00 NA 6.06 NA 7.89 0.00 0.00 NA NA 0.00 NA NA 0.00 1.96 NA NA 8.00 NA NA 0.00 NA 0.00 0.00 NA 10.00 NA 0.00 0.00 0.00 NA 0.00 5.00 NA 0.00 NA NA NA 6.67 4.76 NA 0.00 N multi_cassette unc-13,I_chr4_904268_904671,CRE_chr4_904268_906381,I_chr4_904268_919018,I_chr4_904747_906385,REI_chr4_906314_906385,I_chr4_906518_906708,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_904268_919018 chr4_904268_906079;chr4_906089_906385;chr4_906518_907590;chr4_913467_919018 chr4_906080_906088;chr4_906386_906517;chr4_907591_913466 chr4_904196_904267;chr4_919019_919102 42.86 100.00 33.33 17.65 50.00 50.00 50.00 66.67 42.86 33.33 0.00 37.50 14.29 50.00 100.00 66.67 50.00 50.00 50.00 42.86 50.00 17.24 33.33 50.00 14.29 50.00 18.18 16.67 9.09 50.00 50.00 50.00 50.00 33.33 25.00 14.29 20.00 50.00 50.00 20.00 20.00 75.00 50.00 28.57 0.00 16.67 50.00 37.50 40.00 20.00 16.67 25.00 50.00 100.00 100.00 50.00 20.00 50.00 K intron_retention Mitf,I_chr4_1225890_1225947 chr4 + chr4_1226294_1226372 chr4_1226293_1226294;chr4_1226372_1226373 chr4_1225948_1226293;chr4_1226373_1226697 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.85 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 100.00 98.92 97.62 97.06 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 98.46 100.00 100.00 100.00 K intron_retention I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499338_1501798 chr3L_1499337_1499338;chr3L_1501798_1501799 chr3L_1499043_1499337;chr3L_1501799_1501892 18.42 9.86 16.95 26.58 9.62 17.74 2.73 26.83 18.45 13.64 31.43 27.93 48.00 20.31 18.82 21.79 14.29 17.31 19.51 21.36 18.92 19.67 23.19 28.57 18.60 7.69 15.87 18.87 18.87 13.04 19.48 12.96 13.16 17.92 19.30 18.42 22.08 15.62 18.92 19.83 29.63 15.79 15.52 18.64 10.34 20.99 16.07 13.13 18.33 13.24 16.25 17.86 10.64 18.92 15.07 15.25 12.73 18.52 K intron_retention Mmp1,E_chr2R_20560380_20562585,I_chr2R_20564123_20565214,I_chr2R_20569965_20572193 chr2R - chr2R_20560375_20562585 chr2R_20560374_20560375;chr2R_20562585_20562586 chr2R_20560344_20560374;chr2R_20562586_20562664 97.83 98.23 98.89 98.46 97.83 99.03 99.07 98.80 99.53 92.80 97.96 95.39 100.00 98.41 97.80 95.83 98.53 98.77 100.00 98.71 100.00 99.70 96.97 99.31 97.44 96.97 97.78 99.07 98.54 96.55 97.66 98.46 96.75 98.44 97.32 92.80 96.74 97.39 99.10 98.80 96.04 98.34 96.00 96.65 99.42 96.93 97.79 92.71 99.37 99.43 95.86 94.94 95.10 96.99 100.00 95.58 95.20 89.53 K intron_retention D1,RI_chr3R_5065631_5065691,I_chr3R_5065631_5065695,I_chr3R_5065631_5065697 chr3R - chr3R_5065631_5065691 chr3R_5065630_5065631;chr3R_5065691_5065692 chr3R_5065531_5065630;chr3R_5065692_5065705 98.92 98.73 96.15 99.35 100.00 100.00 98.00 100.00 98.73 100.00 98.25 99.40 99.01 98.92 99.17 100.00 98.39 98.78 99.09 97.38 97.40 92.31 100.00 98.20 98.21 98.32 98.77 100.00 100.00 98.88 99.02 99.13 99.47 99.29 97.56 100.00 98.46 100.00 96.34 98.98 99.32 99.44 100.00 98.57 95.49 98.00 97.87 98.22 99.10 100.00 98.80 100.00 98.65 100.00 99.25 98.92 96.20 98.41 K intron_retention CG13551,I_chr2R_19265696_19270137,I_chr2R_19265701_19270570 chr2R - chr2R_19265701_19270570 chr2R_19265700_19265701;chr2R_19270570_19270571 chr2R_19265601_19265700;chr2R_19270571_19270645 72.73 NA 53.85 31.25 NA NA 94.12 72.22 42.86 NA 75.00 82.61 88.89 88.89 66.67 72.73 NA NA 90.91 68.97 87.50 83.33 50.00 60.00 87.50 93.33 73.33 100.00 44.44 63.64 66.67 90.91 NA 66.67 NA 73.33 41.67 63.64 66.67 78.95 77.78 63.16 NA 73.33 77.78 92.86 53.85 90.00 92.86 53.33 66.67 NA NA NA 63.64 70.00 44.44 84.62 K intron_retention CG2789 chr2L + chr2L_560311_560369 chr2L_560310_560311;chr2L_560369_560370 chr2L_560097_560310;chr2L_560370_560522 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.62 99.62 100.00 99.52 100.00 100.00 100.00 99.21 100.00 100.00 100.00 99.65 100.00 100.00 100.00 99.38 99.58 100.00 100.00 100.00 99.23 100.00 99.60 100.00 100.00 100.00 99.67 99.66 100.00 100.00 99.34 100.00 100.00 100.00 98.90 99.66 K jcn_only_AA CG30428,RI_chr2R_21141343_21141399 chr2R + chr2R_21141285_21141342 chr2R_21141285_21141327 chr2R_21141243_21141284;chr2R_21141343_21141407 4.88 NA NA 5.56 NA NA 0.00 3.70 5.00 NA NA 16.67 NA NA NA NA 17.39 NA NA 11.11 NA NA 2.22 3.85 NA NA 4.76 NA NA NA NA NA 12.50 0.00 NA NA 20.00 8.70 NA 11.11 NA 2.56 NA 4.17 NA NA NA 13.04 2.86 NA NA NA NA NA 4.35 NA NA NA K intron_retention tefu,I_chr3R_11060517_11060585 chr3R - chr3R_11060892_11060956 chr3R_11060891_11060892;chr3R_11060956_11060957 chr3R_11060586_11060891;chr3R_11060957_11061469 0.00 0.00 0.00 1.72 9.09 0.00 3.77 1.41 2.63 NA 0.00 3.57 2.78 0.00 0.00 0.00 0.00 10.71 0.00 2.90 0.00 0.00 0.00 0.00 12.50 0.00 0.00 NA NA 0.00 3.33 0.00 0.00 5.97 0.00 10.53 5.26 0.00 0.00 3.92 0.00 2.60 10.71 0.00 0.00 0.00 0.00 5.26 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 K intron_retention CG9184 chr3L - chr3L_1322451_1322540 chr3L_1322450_1322451;chr3L_1322540_1322541 chr3L_1321782_1322450;chr3L_1322541_1322702 100.00 NA NA NA NA 88.89 NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 93.75 NA NA NA NA NA 100.00 100.00 100.00 100.00 NA 92.31 88.89 NA NA 100.00 NA 100.00 90.91 NA 100.00 NA NA 92.31 100.00 NA 100.00 88.89 90.91 100.00 NA 100.00 NA 100.00 NA 88.24 95.24 K cassette Pten,I_chr2L_10256507_10256803,F_chr2L_10259663_10260253 chr2L - chr2L_10256507_10257777 chr2L_10256507_10257394;chr2L_10257717_10257777 chr2L_10257395_10257716 chr2L_10256469_10256506;chr2L_10257778_10257993 90.91 90.91 100.00 88.46 83.33 90.91 96.43 92.86 96.88 NA 100.00 95.65 100.00 94.12 88.89 88.89 90.91 90.91 90.48 95.65 85.71 100.00 92.31 92.86 90.00 100.00 90.91 80.00 55.56 100.00 90.00 91.67 100.00 89.29 84.62 69.23 100.00 100.00 80.00 94.12 88.89 96.15 91.67 91.67 88.89 83.33 69.23 92.31 93.55 93.33 89.47 90.00 87.50 90.00 92.31 100.00 76.92 76.47 K intron_retention CG4896,REI_chr2L_1179197_1179859,I_chr2L_1191535_1191648 chr2L + chr2L_1179197_1179451 chr2L_1179196_1179197;chr2L_1179451_1179452 chr2L_1179127_1179196;chr2L_1179452_1179525 12.13 16.67 11.76 NA NA 14.29 NA 25.00 15.15 NA NA 18.18 NA 21.43 NA 6.90 NA 0.00 31.25 9.09 0.00 8.33 16.00 9.52 NA NA 4.35 0.00 0.00 7.69 8.00 NA NA 8.70 NA NA 11.11 NA 11.54 12.50 NA 12.50 NA 0.00 NA NA 20.00 15.00 19.35 NA 20.00 14.29 NA NA 17.65 NA NA NA K cassette scaf6,EI_chr3L_17037760_17037808 chr3L - chr3L_17032434_17033538 chr3L_17032434_17032655;chr3L_17032731_17033538 chr3L_17032656_17032730 chr3L_17032357_17032433;chr3L_17033539_17033701 92.31 93.75 87.50 100.00 87.50 100.00 92.31 93.75 88.00 100.00 100.00 78.57 90.00 90.91 100.00 100.00 100.00 NA 100.00 100.00 100.00 87.50 94.74 91.67 100.00 NA 91.67 NA 87.50 100.00 97.62 NA 88.24 91.67 87.50 80.00 91.67 88.89 NA 94.12 85.71 91.67 NA 93.33 NA 83.33 100.00 100.00 94.44 100.00 76.47 88.89 87.50 100.00 100.00 90.91 92.31 90.00 K multi_cassette capu,I_chr2L_3884519_3902594,I_chr2L_3887800_3888648,I_chr2L_3887896_3888648 chr2L - chr2L_3879068_3893261 chr2L_3879068_3884035;chr2L_3884519_3886983;chr2L_3887557_3893261 chr2L_3884036_3884518;chr2L_3886984_3887556 chr2L_3878895_3879067;chr2L_3893262_3893604 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 K cassette I_chr3R_17177101_17200781,mod(mdg4),RI_chr3R_17183087_17183726,I_chr3R_17183481_17200781,I_chr3R_17183927_17184513,I_chr3R_17183927_17185306 chr3R - chr3R_17183087_17200781;chr3R_17183481_17200781 chr3R_17183087_17183726,chr3R_17183481_17183726;chr3R_17183927_17200781 chr3R_17183727_17183926 chr3R_17183072_17183086;chr3R_17200782_17200881 81.48 87.64 81.82 80.00 77.78 78.57 85.07 77.27 77.12 91.11 75.41 80.00 83.67 73.21 78.38 74.63 79.59 75.00 89.58 82.05 78.85 91.14 80.37 81.08 84.51 77.36 83.67 81.63 89.02 91.21 87.93 78.00 83.05 82.14 76.39 82.19 83.56 81.73 89.03 82.67 74.03 81.48 75.00 82.50 83.94 81.48 82.91 79.39 77.98 74.07 89.72 81.82 85.92 80.00 79.41 78.63 85.57 75.37 K intron_retention CG9947,eIF-2alpha chrX - chrX_16333102_16333263 chrX_16333101_16333102;chrX_16333263_16333264 chrX_16333033_16333101;chrX_16333264_16333319 98.81 99.49 99.41 100.00 100.00 99.25 99.67 99.69 99.35 98.41 100.00 97.54 97.12 100.00 98.98 99.51 99.61 100.00 98.13 97.66 98.84 99.45 99.03 96.92 94.12 99.35 95.27 96.49 99.07 99.17 98.17 98.02 99.06 98.95 98.98 98.81 98.39 99.33 98.36 98.01 93.46 99.72 99.35 96.90 96.64 97.14 99.54 97.70 99.68 97.35 97.45 97.78 96.32 98.00 98.62 98.11 98.68 96.61 K intron_retention CG4699 chr3R + chr3R_11624200_11624442 chr3R_11624199_11624200;chr3R_11624442_11624443 chr3R_11623809_11624199;chr3R_11624443_11624758 20.25 15.69 22.22 39.29 43.75 30.77 39.02 29.55 28.99 9.80 29.03 22.06 28.00 32.14 26.83 30.77 26.92 28.57 23.81 26.19 37.50 20.25 18.52 12.94 16.39 13.79 18.95 22.99 13.48 18.27 26.47 21.28 17.65 25.00 10.91 8.06 15.04 8.54 10.09 16.43 19.67 25.86 26.47 17.33 15.38 18.33 11.25 23.40 28.33 12.20 16.00 16.33 15.79 9.09 31.71 16.90 14.58 20.97 K intron_retention Spn,I_chr3L_2511764_2512148 chr3L - chr3L_2508908_2509363 chr3L_2508907_2508908;chr3L_2509363_2509364 chr3L_2508896_2508907;chr3L_2509364_2509500 6.25 NA NA 0.00 NA NA NA NA 18.75 NA NA 14.29 NA NA NA NA NA NA NA NA NA 6.25 6.67 0.00 NA NA NA 11.11 0.00 6.67 NA NA 6.25 NA NA NA 0.00 NA 0.00 10.26 NA 12.50 NA 6.67 0.00 0.00 NA 2.94 NA NA NA NA NA NA NA NA NA 0.00 K alternative_donor Cyp1,RI_chrX_16212641_16213159,RI_chrX_16212641_16213308,I_chrX_16212641_16213680,I_chrX_16212641_16213960 chrX - chrX_16212641_16213308;chrX_16212641_16214111 chrX_16212641_16213960 chrX_16212541_16212640;chrX_16214112_16214235 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Rgl chr3L - chr3L_13903686_13912290 chr3L_13903686_13907061;chr3L_13907626_13912290 chr3L_13907062_13907625 chr3L_13903584_13903685;chr3L_13912291_13912342 96.97 95.45 100.00 89.74 100.00 94.44 92.86 91.89 100.00 95.45 93.33 96.88 94.74 100.00 100.00 96.30 100.00 92.86 94.44 97.50 100.00 97.83 96.43 100.00 92.31 94.74 97.56 100.00 92.31 100.00 100.00 100.00 97.14 93.55 92.59 96.97 95.92 93.33 100.00 97.87 93.75 97.44 93.33 94.00 100.00 95.24 93.75 97.50 97.14 100.00 97.56 96.30 92.31 100.00 100.00 94.12 100.00 100.00 K intron_retention CG8034 chrX - chrX_19178852_19191148 chrX_19178851_19178852;chrX_19191148_19191149 chrX_19177390_19178851;chrX_19191149_19191753 0.00 0.00 0.00 0.47 0.68 0.00 0.00 0.96 1.55 0.31 0.00 0.45 0.54 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.59 0.77 0.00 1.01 0.00 0.40 0.80 0.30 0.00 0.00 0.00 0.14 1.15 0.00 0.35 0.35 0.00 0.33 0.20 0.00 0.98 0.00 0.00 0.00 0.63 0.00 0.30 0.29 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.29 K intron_retention RI_chr3R_205772_205830,Cont,I_chr3R_207254_207600 chr3R + chr3R_210780_210842 chr3R_210779_210780;chr3R_210842_210843 chr3R_210613_210779;chr3R_210843_211715 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 4.41 0.00 0.00 4.26 5.56 3.33 3.45 8.00 0.00 4.35 4.00 3.03 0.00 1.80 3.61 1.43 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 9.09 1.45 4.17 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 1.67 0.00 K intron_retention Ca-P60A,RI_chr2R_19820338_19820541,I_chr2R_19820338_19821424,CEI_chr2R_19820338_19821830,I_chr2R_19820338_19823289 chr2R - chr2R_19820338_19820955 chr2R_19820337_19820338;chr2R_19820955_19820956 chr2R_19820238_19820337;chr2R_19820956_19820969 100.00 100.00 100.00 99.34 100.00 97.78 100.00 98.41 99.58 100.00 100.00 100.00 100.00 100.00 99.05 100.00 98.75 98.61 98.88 100.00 100.00 98.70 100.00 100.00 100.00 100.00 97.14 97.14 97.83 98.41 100.00 100.00 99.34 99.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.37 98.55 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention spz chr3R - chr3R_22893218_22894865 chr3R_22893217_22893218;chr3R_22894865_22894866 chr3R_22893194_22893217;chr3R_22894866_22895053 9.43 3.77 6.76 28.21 0.00 6.82 26.47 15.87 12.30 5.56 4.65 13.16 12.90 8.47 7.02 10.75 7.14 11.63 7.27 7.22 7.32 8.00 6.06 14.55 11.36 9.52 13.95 7.14 29.41 10.53 10.00 11.43 14.71 13.89 6.12 25.00 11.63 8.16 10.64 7.41 18.33 11.65 9.26 12.50 8.57 12.90 9.43 15.71 8.13 6.25 8.06 5.00 9.68 4.35 6.76 9.43 5.97 11.11 K intron_retention cic chr3R + chr3R_16126135_16126329 chr3R_16126134_16126135;chr3R_16126329_16126330 chr3R_16125939_16126134;chr3R_16126330_16126761 0.00 0.00 2.53 1.24 0.00 0.00 1.83 3.51 2.14 0.00 2.04 1.59 1.52 1.39 0.00 0.00 0.00 0.00 0.00 2.54 0.00 0.00 0.00 0.00 0.00 0.98 0.00 2.20 0.00 0.00 0.00 0.00 0.00 1.48 1.37 0.00 0.00 0.00 0.00 0.00 0.00 1.15 1.41 0.00 0.00 0.00 0.00 0.00 2.21 1.41 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 K intron_retention l(1)G0136 chrX + chrX_15628640_15629131 chrX_15628639_15628640;chrX_15629131_15629132 chrX_15628614_15628639;chrX_15629132_15629207 7.14 2.33 6.45 7.32 0.00 10.71 21.62 10.71 9.26 3.28 17.65 10.53 11.11 5.88 5.00 12.00 0.00 7.41 0.00 9.52 22.22 6.67 3.12 8.06 5.00 10.00 8.89 7.59 28.26 9.68 6.25 9.30 7.55 0.00 6.45 17.39 5.66 4.17 8.11 4.84 11.11 7.14 0.00 7.14 8.33 3.61 4.17 8.00 6.35 6.85 2.27 4.55 9.80 5.71 6.45 7.55 4.35 8.47 K jcn_only_AD CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25318474_25319136;chr3R_25318474_25319163;chr3R_25318474_25319142;chr3R_25318474_25318925;chr3R_25318474_25319093;chr3R_25318474_25318971;chr3R_25318474_25319167 chr3R_25318474_25319004 chr3R_25318374_25318473;chr3R_25319168_25319224 2.16 1.61 2.17 3.09 0.78 2.51 4.76 3.42 2.58 3.06 2.30 2.02 2.04 0.97 2.36 3.43 0.99 2.16 2.20 2.02 3.45 4.25 3.30 1.83 1.03 1.26 1.78 5.80 6.22 0.72 3.65 3.40 3.28 1.23 1.09 3.67 1.52 0.80 2.07 1.06 3.85 1.62 3.18 1.72 1.22 3.60 3.24 5.08 1.81 1.90 3.06 1.89 1.37 1.63 2.41 0.89 1.26 3.59 K intron_retention CG1785 chrX + chrX_8609429_8609484 chrX_8609428_8609429;chrX_8609484_8609485 chrX_8609255_8609428;chrX_8609485_8609805 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention msn,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2564696_2566201 chr3L_2564695_2564696;chr3L_2566201_2566202 chr3L_2564397_2564695;chr3L_2566202_2566375 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K intron_retention stj chr2R + chr2R_9704485_9704571 chr2R_9704484_9704485;chr2R_9704571_9704572 chr2R_9704260_9704484;chr2R_9704572_9705114 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 5.97 1.16 0.00 1.79 0.00 0.00 0.00 0.00 7.41 0.00 0.00 2.17 0.00 10.62 3.12 0.00 0.00 0.00 3.53 4.00 0.00 2.22 0.00 3.39 2.50 1.35 4.65 2.74 2.59 0.00 0.00 1.03 4.88 0.00 NA 0.00 1.72 1.32 0.00 1.63 0.00 0.00 0.00 0.00 0.49 5.00 3.51 0.00 0.00 1.43 K intron_retention Spf45 chr2L - chr2L_22960877_22960931 chr2L_22960876_22960877;chr2L_22960931_22960932 chr2L_22959877_22960876;chr2L_22960932_22961115 4.29 1.72 10.00 1.44 6.25 3.64 6.78 3.60 5.51 11.76 0.00 3.50 7.50 7.02 1.67 5.00 5.88 4.88 5.80 5.04 0.00 0.00 7.79 0.00 7.32 3.39 14.29 21.74 11.43 1.75 6.35 3.85 0.00 8.20 4.17 0.00 3.12 4.76 4.17 5.41 8.33 4.39 0.00 1.39 12.20 2.78 3.28 12.24 3.38 3.64 4.21 0.00 6.00 8.51 4.29 0.00 2.78 5.56 K alternative_last_exon l(2)05714,I_chr2L_4970785_4973718,RI_chr2L_4971343_4973718,CG8892 chr2L - chr2L_4970785_4973718 chr2L_4971323_4973718,chr2L_4971454_4973718 chr2L_4968432_4970784 chr2L_4971054_4971322 chr2L_4973719_4973787 100.00 100.00 100.00 97.44 95.00 95.24 100.00 96.97 100.00 93.33 95.00 100.00 96.00 100.00 100.00 100.00 100.00 95.65 100.00 98.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 96.67 100.00 100.00 97.83 100.00 100.00 100.00 96.77 100.00 100.00 97.14 98.18 100.00 100.00 100.00 100.00 98.08 97.78 100.00 98.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 98.97 K alternative_donor CG14478 chr2R + chr2R_13345960_13349498;chr2R_13345529_13349498 chr2R_13345952_13349498 chr2R_13349499_13349990;chr2R_13345525_13345528 33.33 NA 50.00 NA 33.33 NA NA 28.57 30.00 NA 50.00 25.00 50.00 NA NA NA NA NA NA 33.33 NA NA 25.00 25.00 33.33 25.00 33.33 NA NA NA 25.00 NA NA 25.00 33.33 NA 25.00 NA NA 20.00 NA 62.50 100.00 33.33 NA 33.33 NA NA 57.14 NA 33.33 NA NA NA NA NA 50.00 NA K alternative_donor osa,R_chr3R_13525411_13533475,I_chr3R_13525426_13525859 chr3R - chr3R_13525426_13525849;chr3R_13525426_13525859 chr3R_13525426_13533492 chr3R_13525326_13525425;chr3R_13533493_13533575 98.46 99.19 98.33 97.01 98.70 98.39 97.62 96.97 97.83 99.15 98.36 98.39 97.67 98.28 98.75 95.12 98.46 96.61 98.25 98.47 98.48 99.15 99.49 99.38 99.12 98.33 98.96 97.98 98.10 99.55 96.92 97.73 99.45 97.85 99.09 99.21 99.70 99.03 99.44 98.60 96.97 98.91 98.04 98.59 97.50 98.11 98.46 98.36 98.69 98.92 99.14 98.67 98.41 100.00 98.61 97.87 95.24 95.83 N multi_cassette CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525393_1529105 chr3L_1525393_1525641;chr3L_1525701_1527189;chr3L_1527382_1527438;chr3L_1527614_1527673;chr3L_1528077_1529105 chr3L_1525642_1525700;chr3L_1527190_1527381;chr3L_1527439_1527613;chr3L_1527674_1528076 chr3L_1525293_1525392;chr3L_1529106_1529206 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 42.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Asx chr2R + chr2R_10394855_10394920 chr2R_10394855_10394917 chr2R_10394762_10394854;chr2R_10394921_10394986 0.00 NA NA 3.45 NA NA NA 4.35 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA 11.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention Syn1,I_chr3L_21753613_21754057 chr3L - chr3L_21739717_21739768 chr3L_21739716_21739717;chr3L_21739768_21739769 chr3L_21738492_21739716;chr3L_21739769_21740137 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 3.12 0.00 NA 0.00 0.00 0.00 0.00 6.25 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 2.00 NA 0.00 NA 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 5.71 0.00 0.00 0.00 K intron_retention CG10166,CG10165 chr2L - chr2L_19525885_19525952 chr2L_19525884_19525885;chr2L_19525952_19525953 chr2L_19525349_19525884;chr2L_19525953_19526163 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention unc-13,I_chr4_897821_902468,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_899619_903586 chr4_899618_899619;chr4_903586_903587 chr4_899519_899618;chr4_903587_903686 92.16 91.67 100.00 87.10 93.33 100.00 93.94 96.55 93.02 90.91 100.00 86.67 95.65 95.00 94.44 96.30 95.00 100.00 95.65 100.00 100.00 78.57 83.33 73.33 84.62 73.91 92.00 91.67 85.71 92.31 94.12 NA 94.44 97.06 73.33 40.91 100.00 NA 90.91 100.00 90.91 90.00 89.47 75.00 NA 88.89 88.89 82.35 89.74 100.00 86.67 90.91 NA NA 100.00 100.00 100.00 91.67 K intron_retention CG1832,I_chr2L_22168644_22168740 chr2L - chr2L_22166988_22167049 chr2L_22166987_22166988;chr2L_22167049_22167050 chr2L_22166007_22166987;chr2L_22167050_22167238 0.00 0.00 0.98 0.00 0.00 0.00 1.22 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 1.79 0.00 0.47 0.00 1.01 1.49 0.00 0.00 0.00 1.12 4.35 0.00 0.00 1.71 0.00 0.00 1.14 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention S6k,I_chr3L_5800361_5803389,RI_chr3L_5801924_5803389 chr3L - chr3L_5799981_5800044 chr3L_5799980_5799981;chr3L_5800044_5800045 chr3L_5799847_5799980;chr3L_5800045_5800176 1.20 0.00 1.68 2.92 0.00 1.87 5.20 2.22 1.70 0.00 2.20 1.86 0.87 0.00 4.39 3.09 0.91 1.12 1.68 3.37 0.00 1.28 0.00 0.00 3.30 1.03 5.00 11.11 2.44 0.00 0.00 0.00 1.89 2.55 2.94 3.30 0.00 1.69 0.00 1.83 5.00 2.51 1.20 0.00 0.00 0.00 0.00 1.48 1.20 1.16 1.01 0.00 0.00 0.00 1.81 0.92 0.00 1.38 K intron_retention CG11178,CG11177 chrX + chrX_13501508_13501715 chrX_13501507_13501508;chrX_13501715_13501716 chrX_13500121_13501507;chrX_13501716_13502117 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 2.35 0.00 4.65 0.00 0.00 2.94 0.00 5.00 2.70 0.00 0.00 0.87 0.00 1.42 1.02 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 2.91 0.00 2.83 0.00 4.08 0.00 2.56 0.00 0.00 2.94 0.00 2.47 3.45 0.00 0.00 0.00 0.00 0.00 0.00 K cassette pr-set7 chr3R + chr3R_10141926_10142198 chr3R_10141926_10142032;chr3R_10142103_10142198 chr3R_10142033_10142102 chr3R_10141765_10141925;chr3R_10142199_10142589 10.81 10.53 11.11 10.71 NA 15.00 10.00 3.03 15.00 NA NA 9.52 5.56 11.76 6.67 10.00 16.67 29.41 13.33 9.38 NA NA 5.88 7.69 15.38 10.53 NA NA NA NA 4.76 NA NA 13.79 12.50 12.50 NA NA NA 8.33 NA 11.76 10.00 NA NA 8.33 NA 26.32 10.81 NA 16.67 NA NA NA 13.64 NA NA 23.08 K intron_retention RpL36A,I_chr2L_8042614_8042691 chr2L - chr2L_8042614_8042822 chr2L_8042613_8042614;chr2L_8042822_8042823 chr2L_8042514_8042613;chr2L_8042823_8042836 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.05 0.00 0.03 0.00 0.00 0.04 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.15 0.00 0.53 3.60 0.44 0.00 0.22 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.03 0.00 0.96 0.06 0.45 0.34 0.33 0.00 0.30 0.86 0.00 0.13 0.00 0.02 0.11 0.00 0.18 N cassette Wwox,I_chr2L_8000434_8000497,Spn28D chr2L - chr2L_8000237_8003283 chr2L_8000237_8000303;chr2L_8000434_8003283 chr2L_8000304_8000433 chr2L_8000108_8000236;chr2L_8003284_8003463 50.00 50.00 57.58 34.38 50.00 60.87 55.26 52.50 53.19 46.15 26.32 47.06 13.64 100.00 46.15 45.95 52.63 20.83 50.00 43.86 44.00 59.52 41.67 41.67 50.00 68.18 33.33 43.75 58.62 100.00 56.25 62.50 53.33 50.00 60.87 40.48 44.44 40.00 43.14 55.26 55.17 50.94 52.63 41.38 56.41 42.86 39.13 100.00 59.52 31.82 45.45 34.62 44.44 43.18 53.85 44.44 35.82 55.56 N jcn_only_AA yki chr2R - chr2R_19954778_19954987 chr2R_19954887_19954987 chr2R_19954988_19955750;chr2R_19954686_19954777 0.00 0.00 0.00 0.00 0.00 0.00 4.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor trio,I_chr3L_999683_1009321 chr3L - chr3L_1034066_1034762 chr3L_1034066_1034753 chr3L_1033650_1034065;chr3L_1034763_1034875 7.02 6.25 7.14 6.25 NA NA 6.67 10.53 15.15 NA NA 12.00 NA 14.29 11.11 26.09 NA NA 12.50 9.09 NA NA 8.20 4.76 0.00 NA 4.76 NA NA 6.90 6.67 NA NA 4.76 12.50 9.52 9.09 0.00 NA 3.85 NA 17.65 6.67 4.00 NA NA 6.67 NA 7.69 NA 6.67 0.00 NA NA 8.33 NA NA NA N multi_cassette CG34408,I_chrX_10120689_10121004 chrX + chrX_10116620_10119223 chrX_10116620_10118346;chrX_10118539_10118951;chrX_10119093_10119223 chrX_10118347_10118538;chrX_10118952_10119092 chrX_10116359_10116619;chrX_10119224_10119749 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 81.58 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG11984,I_chr3R_4837327_4837383,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4837327_4837395 chr3R_4837326_4837327;chr3R_4837395_4837396 chr3R_4837227_4837326;chr3R_4837396_4837483 4.98 3.87 3.12 7.76 9.52 5.00 4.35 6.25 3.65 5.10 3.39 5.45 10.64 1.72 6.25 7.69 3.70 3.95 7.81 4.12 0.00 12.66 7.17 4.14 3.23 13.89 6.90 1.67 5.17 5.17 3.70 3.92 3.40 6.11 5.30 4.00 4.31 4.24 5.23 6.85 5.88 4.98 9.68 6.56 4.26 5.83 3.59 6.54 5.97 2.51 6.84 1.27 3.23 4.61 7.61 4.66 3.04 3.76 K alternative_donor ScpX chr2L + chr2L_18831359_18831722 chr2L_18831387_18831722 chr2L_18831723_18832046;chr2L_18831240_18831358 100.00 100.00 95.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 93.33 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 96.43 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 97.62 100.00 K jcn_only_AD His4r chr3R + chr3R_10451640_10451747;chr3R_10451564_10451747 chr3R_10451538_10451747 chr3R_10451748_10451951;chr3R_10451469_10451537 91.16 92.73 92.52 94.43 91.72 93.40 89.46 92.68 91.54 87.94 92.36 93.60 91.58 89.25 91.22 87.80 90.63 94.33 94.83 93.03 94.04 84.93 81.63 89.74 83.65 94.31 75.81 88.00 85.53 84.07 92.11 93.39 94.84 94.16 72.62 87.18 89.56 96.48 92.39 86.83 88.39 94.25 92.27 83.50 94.08 82.22 88.17 88.44 94.53 81.12 79.41 91.16 85.91 80.53 94.37 89.00 83.94 91.94 K intron_retention CG14130 chr3L + chr3L_11808923_11808990 chr3L_11808922_11808923;chr3L_11808990_11808991 chr3L_11808765_11808922;chr3L_11808991_11809158 33.33 NA 47.06 57.14 16.67 46.67 33.33 19.05 26.09 NA 41.67 38.10 50.00 33.33 37.50 40.00 NA 16.67 30.77 26.67 NA 54.55 29.41 33.33 NA NA 23.53 NA 60.00 NA 47.83 NA 28.57 31.25 NA NA 23.53 46.15 43.75 42.86 41.67 29.41 NA NA 23.53 28.57 30.00 41.67 30.00 41.18 33.33 NA 40.00 NA NA 25.00 14.29 27.27 K alternative_donor CG13602,I_chr3R_19753657_19753715 chr3R - chr3R_19753657_19753715;chr3R_19753657_19753869 chr3R_19753657_19753717 chr3R_19753602_19753656;chr3R_19753870_19754006 80.00 75.00 66.67 NA NA NA 100.00 83.33 88.89 NA NA 71.43 NA NA NA 83.33 NA NA NA 88.89 80.00 NA 83.33 75.00 NA NA NA NA NA 66.67 83.33 100.00 NA NA NA 75.00 NA 71.43 80.00 88.89 83.33 60.00 NA NA 50.00 88.89 80.00 80.00 62.50 NA 75.00 NA NA 85.71 100.00 100.00 75.00 66.67 K jcn_only_AA Sap47,I_chr3R_11761076_11761674,I_chr3R_11761436_11761674,F_chr3R_11761635_11761698,E_chr3R_11761635_11761703 chr3R + chr3R_11761307_11761561;chr3R_11761307_11761698;chr3R_11761307_11761703 chr3R_11761307_11761674 chr3R_11761299_11761306;chr3R_11761704_11761774 95.83 NA NA NA NA NA 95.65 NA 95.83 NA 100.00 NA NA NA NA NA NA NA NA 100.00 86.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 95.24 NA NA NA NA NA NA NA NA NA K intron_retention alpha-Cat,I_chr3L_23319861_23321813,I_chr3L_23327841_23328002 chr3L - chr3L_23322021_23322078 chr3L_23322020_23322021;chr3L_23322078_23322079 chr3L_23321814_23322020;chr3L_23322079_23322498 100.00 100.00 100.00 100.00 98.44 98.57 100.00 99.45 99.05 96.88 100.00 99.38 100.00 100.00 100.00 99.47 98.98 98.39 99.28 99.40 100.00 100.00 100.00 100.00 100.00 100.00 98.80 97.37 100.00 98.82 100.00 100.00 99.13 99.48 98.39 98.48 100.00 97.73 98.31 99.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.82 99.51 98.57 98.75 100.00 100.00 100.00 99.18 98.44 100.00 100.00 K intron_retention CG12084,I_chr3L_1494947_1496080,RI_chr3L_1499880_1501350 chr3L - chr3L_1492464_1492645 chr3L_1492463_1492464;chr3L_1492645_1492646 chr3L_1492314_1492463;chr3L_1492646_1492807 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.14 0.00 0.00 1.59 0.00 0.00 6.90 1.03 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1812,noncoding_24986 chrX + chrX_20385218_20385380 chrX_20385217_20385218;chrX_20385380_20385381 chrX_20384858_20385217;chrX_20385381_20386855 0.00 0.00 NA 0.00 0.00 NA 17.65 0.00 2.78 NA 0.00 0.00 NA 6.67 0.00 NA NA NA NA 5.56 NA 8.00 0.00 0.00 0.00 0.00 11.11 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 11.76 0.00 NA 0.00 NA 4.76 0.00 NA NA K jcn_only_AD CG33232,I_chr3L_2484838_2495010,CG1146,noncoding_10153 chr3L + chr3L_2488891_2490979 chr3L_2489010_2490979 chr3L_2490980_2492250;chr3L_2488838_2488890 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA 95.83 100.00 NA NA NA NA NA NA NA NA 100.00 K alternative_donor CG31998,I_chr4_225419_226294 chr4 - chr4_225419_226284;chr4_225419_226366 chr4_225419_226474 chr4_225319_225418;chr4_226475_226518 10.55 11.11 11.11 5.41 16.67 0.00 5.41 9.09 6.52 NA 12.50 15.38 29.41 0.00 25.00 5.88 14.29 0.00 30.77 12.50 11.11 20.00 9.09 NA 28.57 0.00 16.67 20.00 NA NA 0.00 NA 0.00 7.41 0.00 0.00 16.67 NA NA 0.00 NA 5.26 10.00 16.67 NA NA NA 16.67 11.54 NA 0.00 14.29 NA NA 10.00 NA NA NA K alternative_donor Ras85D,I_chr3R_5338160_5338509,EI_chr3R_5338175_5338279,I_chr3R_5338175_5338299 chr3R - chr3R_5338175_5338299;chr3R_5338175_5338279 chr3R_5338175_5338509 chr3R_5338075_5338174;chr3R_5338510_5338609 97.67 97.66 96.63 97.71 100.00 98.12 97.09 96.73 97.37 100.00 98.88 97.86 97.50 97.64 97.99 96.68 97.26 97.53 97.62 98.15 100.00 98.13 96.43 96.48 98.65 97.40 95.74 95.88 97.64 98.31 97.54 97.61 99.04 97.67 97.39 98.50 98.77 98.17 99.34 97.56 98.48 97.57 96.50 97.56 98.73 97.79 97.99 98.06 97.76 98.97 95.45 100.00 98.33 96.81 97.14 95.15 98.59 98.61 K intron_retention CG3493 chr2R - chr2R_19263477_19263555 chr2R_19263476_19263477;chr2R_19263555_19263556 chr2R_19259766_19263476;chr2R_19263556_19263759 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CSN5 chr3R + chr3R_12296792_12296850;chr3R_12296683_12296850 chr3R_12296786_12296850 chr3R_12296851_12297070;chr3R_12296215_12296682 31.71 22.22 26.19 27.69 28.57 29.27 27.54 21.88 31.71 25.93 32.35 31.25 27.03 33.33 38.78 29.41 34.15 32.65 38.30 35.96 34.29 30.00 29.73 36.36 33.33 41.18 25.76 17.86 35.42 39.47 36.73 30.77 34.09 30.88 31.71 37.50 31.75 33.33 32.81 28.95 36.59 29.27 25.81 18.37 28.00 36.62 32.91 26.19 26.03 29.33 26.39 20.45 33.93 34.92 33.96 35.29 33.33 28.81 K jcn_only_AA phtf,I_chr2R_2629598_2630209 chr2R + chr2R_2632045_2632107 chr2R_2632045_2632103 chr2R_2631158_2632044;chr2R_2632108_2632282 97.96 100.00 97.37 92.31 95.00 100.00 85.19 95.31 98.21 NA 95.83 97.96 NA 95.83 100.00 94.29 NA 100.00 97.44 96.30 95.24 100.00 98.08 100.00 NA 100.00 100.00 NA NA NA 93.94 NA 96.97 92.86 100.00 96.97 100.00 100.00 100.00 100.00 NA 100.00 95.45 97.30 96.43 96.88 100.00 100.00 97.87 81.82 100.00 NA 100.00 94.12 100.00 97.14 100.00 100.00 K intron_retention Fak56D,F_chr2R_15323055_15323097 chr2R - chr2R_15324149_15324555 chr2R_15324148_15324149;chr2R_15324555_15324556 chr2R_15324053_15324148;chr2R_15324556_15324680 93.75 90.91 85.00 95.24 100.00 94.44 95.65 96.55 96.67 100.00 92.31 88.46 92.31 92.86 93.75 96.55 90.91 100.00 94.12 87.50 94.12 92.31 94.74 88.89 100.00 94.44 95.83 100.00 100.00 93.33 100.00 NA 95.24 88.89 94.12 95.83 91.67 90.91 90.48 87.10 90.91 96.00 84.62 92.31 NA 91.67 90.91 88.89 88.46 NA 82.35 100.00 NA NA 100.00 100.00 NA 90.00 K intron_retention CG5191,E_chr3R_16391739_16398166,CG5412 chr3R + chr3R_16396372_16396811 chr3R_16396371_16396372;chr3R_16396811_16396812 chr3R_16396324_16396371;chr3R_16396812_16398636 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 10.53 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Cp1,Aats-phe chr2R + chr2R_9848382_9849731 chr2R_9848382_9849724 chr2R_9848168_9848381;chr2R_9849732_9849841 100.00 100.00 99.98 99.96 100.00 100.00 100.00 99.99 100.00 100.00 100.00 99.99 99.98 99.97 99.98 99.97 99.96 100.00 99.96 99.96 99.97 100.00 100.00 99.96 100.00 100.00 99.96 98.25 99.90 100.00 100.00 99.96 99.91 99.99 100.00 100.00 100.00 100.00 99.96 100.00 100.00 99.99 99.97 100.00 99.96 100.00 99.96 99.95 99.99 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.96 100.00 N alternative_last_exon lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6394546_6419543,I_chr2R_6403557_6406705,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6398510_6403339 chr2R_6403164_6403339 chr2R_6398030_6398509 chr2R_6402519_6403163 chr2R_6403340_6403556 80.85 82.86 93.02 66.39 84.62 79.31 67.80 84.13 80.92 75.00 70.00 94.19 79.03 89.09 68.75 91.84 88.64 64.29 92.59 66.99 86.21 74.29 85.45 58.70 52.63 44.90 85.00 88.24 60.53 66.67 92.50 81.25 96.15 88.78 90.62 90.91 70.83 88.00 51.28 71.23 57.14 89.66 87.18 77.78 37.04 68.57 85.71 80.85 77.97 87.50 91.67 90.00 76.47 80.00 66.67 75.00 48.48 88.00 K intron_retention CG31342,I_chr3R_8813079_8814327,I_chr3R_8822346_8822403 chr3R + chr3R_8813079_8813154 chr3R_8813078_8813079;chr3R_8813154_8813155 chr3R_8812979_8813078;chr3R_8813155_8813206 1.85 8.16 1.85 2.35 6.90 0.00 5.33 0.00 4.59 0.00 0.00 1.10 0.00 4.44 0.00 3.51 0.00 0.00 4.88 4.20 0.00 2.11 0.00 2.27 5.26 2.86 3.39 0.00 6.38 1.67 0.00 0.00 0.00 3.61 0.00 2.04 0.00 0.00 0.00 2.17 0.00 1.90 5.71 2.86 0.00 0.00 3.92 0.00 0.00 6.25 0.00 9.09 0.00 3.23 1.72 7.14 4.76 5.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2814327_2817753 chr2R_2814327_2814894;chr2R_2815654_2816013;chr2R_2816342_2816577;chr2R_2816779_2817327;chr2R_2817604_2817753 chr2R_2814895_2815653;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817328_2817603 chr2R_2814227_2814326;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 K intron_retention CG7816,R_chr3R_25691122_25691551,RI_chr3R_25691122_25692883,RI_chr3R_25691122_25694436 chr3R - chr3R_25691122_25694365 chr3R_25691121_25691122;chr3R_25694365_25694366 chr3R_25691022_25691121;chr3R_25694366_25694618 65.71 65.22 76.32 72.58 85.71 72.41 73.81 60.47 79.35 50.00 63.64 76.36 55.32 69.44 65.71 73.08 70.97 76.00 80.00 53.12 54.55 67.86 61.54 75.68 54.17 75.00 70.21 53.12 41.30 52.00 87.88 56.52 54.17 63.64 69.57 56.67 53.57 75.00 43.33 83.78 70.00 74.63 72.41 68.29 47.62 61.54 48.28 72.73 62.96 54.05 63.04 71.43 65.22 52.63 74.29 61.54 62.16 69.77 K jcn_only_AA Mvl,E_chr3R_16880765_16881066 chr3R - chr3R_16878968_16881066 chr3R_16879341_16881066 chr3R_16881067_16881137;chr3R_16878926_16878967 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG16912,I_chr2R_20674247_20674291,I_chr2R_20674654_20674897,RI_chr2R_20676692_20676888 chr2R - chr2R_20670364_20670415 chr2R_20670363_20670364;chr2R_20670415_20670416 chr2R_20669789_20670363;chr2R_20670416_20670748 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 9.09 2.86 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 3.45 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 3.33 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1440 chrX + chrX_8334328_8334393 chrX_8334327_8334328;chrX_8334393_8334394 chrX_8333852_8334327;chrX_8334394_8334514 0.45 0.54 0.66 2.35 0.00 0.00 1.93 0.45 0.53 0.00 0.00 0.81 0.00 0.00 0.63 0.72 0.00 0.00 0.00 0.72 0.00 1.47 1.16 0.54 0.93 0.00 1.61 2.88 0.98 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.68 0.00 0.91 0.96 1.92 0.89 0.91 0.58 0.00 0.00 0.00 0.00 0.78 0.00 1.10 0.00 0.00 0.95 1.30 0.00 0.00 0.00 K intron_retention exba,snoRNA:Psi28S-3385b,snoRNA:Psi28S-3385a,snoRNA:Psi28S-3091b,snoRNA:Psi28S-3091a,I_chr3R_1425087_1425925,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1421845_1422582 chr3R_1421844_1421845;chr3R_1422582_1422583 chr3R_1421532_1421844;chr3R_1422583_1422925 0.26 0.19 0.39 0.38 0.31 0.00 0.65 0.48 0.50 0.00 0.00 0.47 0.48 1.06 0.00 0.39 0.51 0.21 0.69 0.19 0.48 0.00 0.31 0.33 0.00 0.00 0.78 1.83 0.00 0.00 0.00 0.41 0.00 0.12 0.38 0.00 0.00 0.00 0.00 0.58 0.00 0.56 0.48 0.00 0.23 0.22 0.26 0.39 0.37 0.00 0.55 0.49 0.00 0.14 0.32 0.00 0.14 0.36 K cassette Mef2,I_chr2R_5804418_5804961,I_chr2R_5806354_5806933,CREFI_chr2R_5809509_5845628,I_chr2R_5814375_5816404,RI_chr2R_5846889_5846948 chr2R - chr2R_5804418_5805442;chr2R_5804397_5805442 chr2R_5804397_5804961,chr2R_5804418_5804961;chr2R_5805037_5805442 chr2R_5804962_5805036 chr2R_5804318_5804396;chr2R_5805443_5805858 44.22 32.00 36.36 44.44 46.67 71.43 36.36 66.67 52.00 47.83 56.25 50.00 56.25 NA 38.89 54.55 40.00 53.33 40.00 44.44 75.00 18.00 54.05 41.38 27.27 NA 45.45 14.29 20.83 41.18 NA 35.00 34.38 45.00 29.41 43.33 36.67 40.91 28.00 47.50 37.50 36.67 66.67 53.57 28.57 57.69 45.45 57.89 39.13 47.83 46.15 41.67 44.00 36.36 44.44 48.00 42.86 68.42 K cassette EI_chr2L_13164741_13164824,Sfmbt chr2L - chr2L_13173942_13175666 chr2L_13173942_13174438;chr2L_13175277_13175666 chr2L_13174439_13175276 chr2L_13172643_13173941;chr2L_13175667_13175952 88.37 89.33 82.72 72.34 80.70 81.67 78.75 84.44 89.71 96.43 90.20 89.47 84.91 82.14 86.49 94.44 88.24 93.33 86.21 83.11 90.38 88.78 87.20 91.86 80.88 91.07 86.05 88.06 93.75 92.63 83.02 90.70 94.12 87.63 90.91 94.87 88.11 87.91 93.10 90.35 95.24 88.37 86.27 89.19 86.79 92.45 86.00 92.00 90.35 81.54 86.32 86.67 92.16 87.18 89.71 92.86 86.79 96.47 K jcn_only_AD CG7627 chr2L - chr2L_8361199_8362283 chr2L_8361199_8362038 chr2L_8361101_8361198;chr2L_8362284_8362421 4.55 0.00 2.63 0.00 NA 13.79 5.88 7.55 6.90 NA NA 8.20 NA 6.06 3.57 2.78 NA NA 2.78 5.41 NA 0.00 6.06 5.71 3.45 NA 0.00 4.55 4.17 0.00 2.86 NA 0.00 13.85 6.67 0.00 5.00 8.00 4.55 0.00 NA 3.77 11.11 10.34 NA 3.85 NA 2.17 8.77 5.00 5.08 7.69 NA NA NA NA 0.00 0.00 K intron_retention Arc-p20 chr2L + chr2L_6125756_6125823 chr2L_6125755_6125756;chr2L_6125823_6125824 chr2L_6125018_6125755;chr2L_6125824_6125931 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention cv,RI_chrX_5584191_5585924,I_chrX_5584351_5585924,I_chrX_5584353_5585924,I_chrX_5584357_5585924,I_chrX_5584683_5585924 chrX + chrX_5584191_5584350 chrX_5584190_5584191;chrX_5584350_5584351 chrX_5584091_5584190;chrX_5584351_5584352 95.35 92.31 93.94 100.00 100.00 93.94 95.35 100.00 97.14 100.00 96.67 92.73 96.97 91.18 90.00 92.86 96.67 88.00 100.00 96.55 91.89 95.24 97.83 95.92 91.67 91.11 97.62 100.00 97.06 97.62 90.00 100.00 98.00 98.08 90.32 100.00 98.15 97.14 94.12 95.16 100.00 97.53 96.55 90.24 92.86 92.68 92.86 97.22 95.18 87.88 91.11 89.66 89.47 95.83 92.68 89.74 95.00 98.33 K cassette Galpha49B,I_chr2R_8501587_8501648,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500357_8503411;chr2R_8500390_8503411 chr2R_8500390_8501648,chr2R_8500357_8501648;chr2R_8501851_8503411 chr2R_8501649_8501850 chr2R_8500333_8500356;chr2R_8503412_8503586 45.83 45.00 50.00 32.95 29.73 40.54 51.35 51.58 43.85 45.83 40.48 81.08 50.00 43.40 41.30 56.32 72.97 51.85 52.63 38.64 43.75 61.29 34.92 45.45 41.18 51.28 45.00 28.95 48.65 30.19 44.44 62.50 46.94 51.16 58.06 65.71 32.14 40.54 43.24 54.55 70.83 54.67 58.14 26.92 50.00 56.52 45.83 61.02 50.56 37.04 41.82 51.43 38.46 40.00 32.79 36.00 44.00 73.08 K intron_retention htt,I_chr3R_24527763_24528033,I_chr3R_24542203_24543363 chr3R + chr3R_24534973_24535980 chr3R_24534972_24534973;chr3R_24535980_24535981 chr3R_24534202_24534972;chr3R_24535981_24536524 7.76 4.55 4.55 12.50 NA 4.76 7.41 14.29 8.11 23.08 0.00 2.00 0.00 0.00 0.00 0.00 0.00 6.67 NA 5.26 0.00 39.13 11.54 5.88 19.05 19.05 8.33 NA 20.83 6.67 7.14 28.57 8.93 5.00 11.11 11.11 11.54 0.00 5.41 8.82 20.00 6.00 0.00 13.04 40.00 0.00 NA 9.80 2.04 30.77 10.34 11.76 10.53 6.67 3.23 14.29 NA 13.33 K alternative_acceptor Strn-Mlck,RFI_chr2R_11847382_11847749,F_chr2R_11850333_11850541 chr2R - chr2R_11847382_11847749 chr2R_11847585_11847749 chr2R_11847750_11847802;chr2R_11847313_11847381 15.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG10462 chr2L - chr2L_19732465_19732572 chr2L_19732469_19732572 chr2L_19732573_19732670;chr2L_19732184_19732464 97.44 95.83 94.44 100.00 90.91 100.00 100.00 97.50 100.00 87.50 91.67 100.00 100.00 100.00 95.45 97.22 93.33 100.00 95.65 97.44 100.00 94.44 96.67 100.00 100.00 93.33 100.00 91.67 95.45 94.44 96.30 100.00 100.00 97.73 100.00 100.00 100.00 91.67 93.75 95.24 96.30 100.00 100.00 96.30 100.00 97.37 96.77 96.15 97.50 96.88 96.88 100.00 100.00 95.45 95.83 100.00 100.00 98.08 K multi_cassette CG40263,F_chr2RHet_1265687_1293040,F_chr2RHet_1298459_1298703,F_chr2RHet_1298459_1311408,F_chr2RHet_1298885_1299622,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1265687_1324445 chr2RHet_1265687_1286305;chr2RHet_1286572_1292103;chr2RHet_1292187_1293055;chr2RHet_1293175_1293235;chr2RHet_1293394_1324445 chr2RHet_1286306_1286571;chr2RHet_1292104_1292186;chr2RHet_1293056_1293174;chr2RHet_1293236_1293393 chr2RHet_1265587_1265686;chr2RHet_1324446_1324530 51.31 52.63 52.63 46.15 60.00 47.62 40.00 49.25 54.55 50.00 NA 48.72 55.56 61.11 61.11 48.57 71.43 60.00 50.00 87.50 40.00 33.33 53.33 47.37 25.00 42.86 71.43 20.00 22.22 75.00 72.00 50.00 37.50 56.41 40.00 22.22 66.67 55.56 53.85 65.00 8.70 59.46 61.11 56.25 20.00 40.00 52.94 80.00 54.29 18.18 68.42 55.56 30.00 50.00 75.00 43.75 33.33 13.79 K intron_retention Fur2,RI_chrX_16267905_16268958,I_chrX_16270205_16270272,I_chrX_16274795_16274867 chrX + chrX_16273881_16273954 chrX_16273880_16273881;chrX_16273954_16273955 chrX_16273595_16273880;chrX_16273955_16274154 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.54 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.54 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754356_15755184;chrX_15754356_15755256;chrX_15754356_15755268;chrX_15754356_15755409 chrX_15754356_15755172 chrX_15754256_15754355;chrX_15755410_15755509 24.00 23.81 25.00 16.67 18.75 NA 24.24 24.00 14.63 NA NA 25.37 26.09 18.75 22.22 22.64 18.18 25.00 22.58 22.00 NA 33.33 24.00 13.33 20.00 NA 25.00 NA 18.18 29.41 27.27 NA 19.35 22.45 25.00 NA 26.09 NA NA 32.14 28.57 18.75 24.24 30.43 28.57 24.00 NA 42.11 40.00 NA 21.05 25.00 NA 16.67 20.00 NA 20.00 25.00 N cassette CG42574,I_chr3R_618802_618939,I_chr3R_621543_625413,I_chr3R_621546_625413 chr3R - chr3R_620787_625413;chr3R_621546_625413 chr3R_621546_622210,chr3R_620787_622210;chr3R_623420_625413 chr3R_622211_623419 chr3R_618940_620786;chr3R_625414_625513 40.98 47.37 32.73 67.57 33.33 34.88 28.57 39.47 40.98 40.98 29.73 62.50 15.22 42.42 46.51 42.55 40.54 39.29 35.14 67.65 28.95 56.64 41.03 50.75 50.00 23.64 41.38 47.86 34.74 41.30 35.94 31.82 31.40 38.55 33.85 52.69 47.47 41.89 44.35 40.86 24.24 39.81 38.46 29.91 52.17 41.38 40.62 32.89 41.67 41.18 36.78 33.33 48.15 41.18 38.78 43.48 47.37 45.83 K cassette Zasp52,I_chr2R_11661472_11663280,I_chr2R_11690993_11701987 chr2R - chr2R_11661472_11664682 chr2R_11661472_11661932;chr2R_11662263_11664682 chr2R_11661933_11662262 chr2R_11661372_11661471;chr2R_11664683_11664791 99.35 100.00 100.00 100.00 100.00 100.00 99.04 99.01 100.00 98.51 100.00 100.00 97.87 98.28 100.00 98.59 98.33 100.00 98.39 99.49 100.00 90.88 99.48 99.35 99.14 100.00 99.17 100.00 99.09 100.00 98.80 98.70 100.00 100.00 98.90 100.00 99.56 98.61 100.00 99.42 98.55 98.95 100.00 99.28 99.19 99.17 99.19 99.09 100.00 99.05 99.38 100.00 98.72 97.67 98.73 100.00 99.24 100.00 K cassette CG7427,I_chr3L_15557029_15557361,RI_chr3L_15557186_15557361 chr3L + chr3L_15556830_15557361 chr3L_15556830_15557115;chr3L_15557186_15557361 chr3L_15557116_15557185 chr3L_15556708_15556829;chr3L_15557362_15557461 0.00 0.00 1.08 0.00 0.00 0.00 1.01 0.00 0.68 3.03 0.00 0.89 1.61 0.00 0.00 0.00 0.00 1.39 1.45 0.38 0.00 4.29 0.81 0.00 0.00 1.61 1.06 0.00 0.00 2.04 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 1.09 0.77 2.94 0.00 0.00 0.00 1.61 1.18 0.70 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 K intron_retention rictor chrX - chrX_19149555_19149623 chrX_19149554_19149555;chrX_19149623_19149624 chrX_19148636_19149554;chrX_19149624_19149748 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.44 NA 0.00 7.41 3.45 0.00 12.50 1.96 0.00 0.00 0.00 0.00 NA 3.45 0.00 K intron_retention tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_560576_560886 chr3R_560575_560576;chr3R_560886_560887 chr3R_560204_560575;chr3R_560887_561068 97.98 98.45 97.30 99.17 98.98 96.83 98.75 95.82 97.89 98.48 94.23 97.88 92.91 99.31 95.95 96.17 98.51 99.13 97.66 97.80 91.74 100.00 98.84 98.64 98.85 98.65 96.91 98.98 99.02 95.96 97.80 98.90 99.02 97.64 98.02 100.00 99.21 99.03 98.46 99.46 98.29 97.71 96.03 99.33 97.94 97.42 97.67 96.64 97.28 99.25 97.25 97.17 98.92 97.98 97.16 99.25 97.73 95.60 K intron_retention Hexo2,CG1785 chrX + chrX_8606146_8606215 chrX_8606145_8606146;chrX_8606215_8606216 chrX_8604804_8606145;chrX_8606216_8606515 0.26 0.24 0.19 0.84 0.36 0.00 0.19 0.60 0.15 0.00 0.00 0.38 0.00 0.22 0.32 0.97 0.00 0.55 0.43 0.39 0.38 0.13 0.25 0.26 0.23 0.41 0.60 0.87 0.87 0.00 0.00 0.49 0.23 0.72 0.00 0.00 0.00 0.16 0.00 0.62 0.69 0.33 0.00 0.12 0.55 0.73 0.57 0.00 0.42 0.32 0.00 0.25 0.24 0.75 0.35 0.45 0.21 0.49 K jcn_only_AD chinmo chr2L + chr2L_1651412_1652774;chr2L_1651430_1652774 chr2L_1651713_1652774 chr2L_1652775_1653511;chr2L_1651300_1651411 81.82 NA 90.91 81.25 NA 75.86 87.10 85.71 90.62 NA NA 74.29 85.71 90.32 68.00 76.67 NA 81.82 92.86 67.92 NA NA 74.07 NA NA NA NA NA NA NA 88.00 NA 81.82 78.18 NA NA NA NA NA 85.71 NA 77.05 NA 94.44 NA 86.96 NA 78.95 84.62 NA 73.91 NA NA NA 66.67 NA NA NA K intron_retention Prosbeta2 chr3L + chr3L_14993480_14993744 chr3L_14993479_14993480;chr3L_14993744_14993745 chr3L_14993300_14993479;chr3L_14993745_14994421 0.00 0.00 0.00 0.74 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 K intron_retention fru chr3R - chr3R_14248905_14256553 chr3R_14248904_14248905;chr3R_14256553_14256554 chr3R_14248842_14248904;chr3R_14256554_14256686 39.01 26.32 44.00 42.86 35.29 28.00 55.17 44.44 47.37 46.15 53.85 41.18 40.62 47.37 48.39 51.43 53.33 69.57 52.00 47.37 40.00 23.40 26.47 33.33 28.57 47.06 31.82 41.67 31.25 16.67 39.13 NA 23.08 55.56 25.00 13.89 16.22 16.67 22.50 20.00 NA 38.89 50.00 19.05 23.08 NA NA 22.22 40.74 NA 33.33 NA 15.38 NA 63.64 NA NA 22.22 K alternative_acceptor AGO2 chr3L + chr3L_15553679_15553749 chr3L_15553679_15553740 chr3L_15553308_15553678;chr3L_15553750_15553871 99.17 99.31 95.83 100.00 100.00 100.00 98.88 99.35 99.60 98.21 98.98 99.40 100.00 97.70 98.84 99.17 100.00 98.21 98.04 99.50 98.86 98.62 99.45 100.00 100.00 98.72 99.19 98.91 98.55 98.91 100.00 98.53 98.67 99.22 98.80 98.67 99.47 96.40 99.17 98.46 100.00 99.39 98.61 99.33 98.65 100.00 97.56 97.78 100.00 97.75 98.92 100.00 97.14 99.38 99.00 99.29 99.54 100.00 K alternative_acceptor Mitf,REI_chr4_1223922_1223965,I_chr4_1225890_1225947 chr4 + chr4_1223922_1223985;chr4_1223922_1224042 chr4_1223922_1223965 chr4_1223822_1223921;chr4_1224043_1224065 0.00 0.00 0.00 0.00 13.33 0.00 0.00 5.56 2.44 11.11 0.00 0.00 5.56 0.00 0.00 6.06 0.00 0.00 3.85 0.00 0.00 0.00 0.00 11.11 14.29 0.00 0.00 NA 0.00 NA 4.55 0.00 0.00 2.56 14.29 16.67 NA NA 0.00 0.00 11.11 3.12 7.14 0.00 NA 20.00 10.00 0.00 3.33 0.00 0.00 0.00 NA NA 4.00 0.00 0.00 0.00 K jcn_only_AA CG3635 chr2L + chr2L_22183467_22183607;chr2L_22183467_22183527 chr2L_22183467_22183599 chr2L_22183394_22183466;chr2L_22183608_22183915 7.05 6.63 9.47 8.33 14.13 8.41 6.88 8.48 8.31 3.70 8.73 10.11 6.67 6.56 6.29 4.91 10.77 11.51 4.70 8.19 7.75 10.60 7.65 4.25 4.80 6.60 7.11 7.07 12.50 5.42 6.40 3.79 5.99 10.53 7.05 2.38 11.26 8.11 5.97 6.14 5.16 10.66 4.21 8.58 6.51 5.99 7.31 2.89 5.70 7.26 6.10 4.76 9.30 5.73 7.14 10.44 9.01 3.96 K jcn_only_AD CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2439416_2439498;chr3L_2435133_2439498 chr3L_2436229_2439498 chr3L_2439499_2439583;chr3L_2434626_2435132 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 99.34 100.00 97.87 98.39 98.21 100.00 100.00 98.48 100.00 98.57 98.67 98.74 100.00 100.00 99.50 100.00 99.23 98.65 99.39 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 99.54 100.00 100.00 99.67 100.00 100.00 100.00 100.00 100.00 99.20 100.00 99.04 100.00 100.00 98.78 98.78 100.00 100.00 99.04 100.00 100.00 100.00 K intron_retention CG31601 chr2L - chr2L_22043043_22043101 chr2L_22043042_22043043;chr2L_22043101_22043102 chr2L_22042402_22043042;chr2L_22043102_22043193 0.00 0.00 0.00 6.48 0.00 0.00 4.55 4.24 2.30 7.14 0.00 0.00 4.00 3.92 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 2.94 4.35 3.85 2.27 11.63 10.53 4.35 0.00 4.84 0.00 0.00 3.49 2.63 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 1.04 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor l(2)gl,I_chr2L_17213_21135,RI_chr2L_20021_20830,I_chr2L_20974_21065 chr2L - chr2L_20021_20830;chr2L_20021_21135 chr2L_20021_21065 chr2L_19921_20020;chr2L_21136_21145 48.34 NA NA 37.50 NA NA 37.50 55.56 46.67 NA NA 80.00 NA NA NA 41.67 NA NA 37.50 NA NA NA NA NA NA NA NA NA NA NA 71.43 NA NA 46.15 NA NA NA NA NA NA NA 50.00 71.43 71.43 NA NA NA 57.14 46.15 NA NA NA NA NA NA NA NA NA N intron_retention Tsp42Ed chr2R - chr2R_2897806_2899096 chr2R_2897805_2897806;chr2R_2899096_2899097 chr2R_2897608_2897805;chr2R_2899097_2899359 100.00 NA NA NA NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 36.84 100.00 100.00 NA NA 100.00 100.00 NA 100.00 NA 100.00 100.00 NA NA NA 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA K alternative_last_exon RpL22,noncoding_21234,snoRNA:Psi18S-531 chrX - chrX_657025_657473 chrX_657267_657473 chrX_656466_657024 chrX_657027_657266 chrX_657474_657843 35.00 32.35 24.00 41.18 30.77 43.75 69.23 24.32 33.33 50.00 44.44 43.90 38.46 20.83 35.71 26.83 41.18 22.58 57.89 29.31 47.83 34.15 30.30 24.39 38.46 45.16 42.86 63.77 69.23 35.00 38.10 41.67 45.83 31.82 30.43 22.86 24.32 23.08 29.27 31.71 50.00 36.96 22.73 35.00 45.45 39.13 26.53 64.29 28.00 17.39 39.47 29.27 34.78 28.26 38.71 30.19 31.34 58.06 K jcn_only_AA Cp190,I_chr3R_11100788_11100846,F_chr3R_11104164_11104239 chr3R - chr3R_11100321_11100846;chr3R_11100334_11100846 chr3R_11100788_11100846 chr3R_11100847_11100931;chr3R_11099837_11100320 1.49 3.70 3.09 0.00 0.00 1.52 5.61 0.77 1.08 2.67 2.27 1.91 1.16 1.30 0.00 0.80 0.00 1.03 3.41 0.40 0.00 4.49 0.00 0.00 1.35 0.00 1.56 1.59 0.00 1.03 1.33 3.12 2.16 3.77 2.02 0.89 3.41 3.92 1.49 1.52 4.48 0.70 5.88 4.17 0.00 0.00 2.94 0.85 1.55 0.00 2.61 0.00 1.35 0.00 2.11 4.76 3.77 1.56 K alternative_donor Ras85D,I_chr3R_5338160_5338509,EI_chr3R_5338175_5338279,I_chr3R_5338175_5338299 chr3R - chr3R_5338175_5338509;chr3R_5338175_5338279 chr3R_5338175_5338299 chr3R_5338075_5338174;chr3R_5338510_5338609 0.56 0.00 1.12 0.98 0.00 0.62 0.97 0.73 0.58 0.00 0.00 0.71 0.83 0.79 0.00 0.00 0.68 0.62 0.60 0.46 0.00 0.00 1.43 1.41 0.00 0.65 2.13 1.03 0.94 0.56 0.00 0.96 0.00 1.17 0.87 0.75 0.00 0.92 0.00 0.41 0.51 0.00 0.70 0.00 0.42 1.33 0.00 0.32 0.96 0.00 1.82 0.00 0.00 0.00 0.48 1.94 0.00 0.55 K intron_retention CG10158 chr2L - chr2L_6945070_6945133 chr2L_6945069_6945070;chr2L_6945133_6945134 chr2L_6943508_6945069;chr2L_6945134_6945341 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 24.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG6454,I_chr3R_20175958_20178905 chr3R + chr3R_20175958_20178905 chr3R_20175958_20177774;chr3R_20178074_20178905 chr3R_20177775_20178073 chr3R_20175858_20175957;chr3R_20178906_20179005 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 98.75 85.71 100.00 98.57 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 97.50 96.88 98.18 95.12 94.12 100.00 94.12 96.15 100.00 100.00 95.00 100.00 98.67 100.00 100.00 98.53 96.00 98.61 100.00 100.00 100.00 97.30 100.00 97.30 98.46 97.14 98.44 96.97 100.00 100.00 100.00 100.00 96.88 100.00 K alternative_acceptor PRL-1,RI_chr2L_16249092_16250080,I_chr2L_16250028_16250080 chr2L - chr2L_16250028_16250080;chr2L_16249707_16250080;chr2L_16249092_16250080 chr2L_16249722_16250080 chr2L_16250081_16250158;chr2L_16248992_16249091 0.00 0.00 0.00 0.37 0.00 0.79 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.62 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 1.03 0.00 0.00 1.37 0.77 0.70 0.00 0.81 0.00 0.00 0.00 0.00 1.18 0.34 0.74 0.00 1.27 0.75 0.00 1.55 0.31 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.57 K intron_retention Ipk1 chr2R + chr2R_16759511_16760044 chr2R_16759510_16759511;chr2R_16760044_16760045 chr2R_16758847_16759510;chr2R_16760045_16760197 43.56 NA NA NA NA NA 25.00 46.15 38.46 NA NA NA NA NA NA 45.45 NA NA NA 35.71 NA NA NA NA NA NA NA NA NA NA 50.00 NA NA 45.45 NA NA 41.67 NA NA 66.67 NA 40.00 NA NA NA NA NA NA 33.33 NA NA NA NA NA 46.15 NA NA NA N intron_retention par-1,I_chr2R_15365210_15370456 chr2R + chr2R_15366895_15368655 chr2R_15366894_15366895;chr2R_15368655_15368656 chr2R_15366674_15366894;chr2R_15368656_15368976 12.50 NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RI_chr2R_3421858_3422836,Corin,I_chr2R_3464510_3464571 chr2R + chr2R_3448177_3448238 chr2R_3448176_3448177;chr2R_3448238_3448239 chr2R_3448050_3448176;chr2R_3448239_3448384 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA 15.79 NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 NA 0.00 NA K jcn_only_AD CG13602,I_chr3R_19753657_19753715 chr3R - chr3R_19753657_19753715;chr3R_19753657_19753717 chr3R_19753657_19753869 chr3R_19753602_19753656;chr3R_19753870_19754006 9.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2389073;chrX_2389272_2390808;chrX_2390959_2391350;chrX_2391522_2395659 chrX_2387584_2387709;chrX_2388437_2388670;chrX_2389074_2389271;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2395660_2395759 0.73 1.92 1.47 0.00 0.00 0.00 0.00 0.75 1.17 0.00 0.00 3.26 0.00 1.72 1.11 0.00 1.54 0.00 1.22 0.99 0.00 0.00 1.12 0.00 2.94 0.00 1.45 0.00 0.00 1.67 1.79 0.00 1.01 0.76 0.00 3.23 1.12 0.00 1.25 0.99 0.00 0.73 1.61 2.74 0.00 0.00 NA 1.54 0.56 0.00 2.04 0.00 0.00 NA 1.02 0.00 0.00 2.04 K alternative_acceptor CG32982,I_chr2L_9127467_9148754,EF_chr2L_9135385_9148841,F_chr2L_9149162_9154658 chr2L + chr2L_9162709_9163294;chr2L_9162709_9163143 chr2L_9162709_9163140 chr2L_9162363_9162708;chr2L_9163295_9163398 92.11 95.24 93.33 90.48 100.00 89.47 88.00 86.67 87.50 87.50 100.00 100.00 91.67 100.00 86.36 100.00 100.00 100.00 100.00 94.74 100.00 92.45 93.75 89.13 95.00 91.67 91.89 89.19 93.75 100.00 96.15 90.62 90.62 89.29 100.00 88.46 89.58 95.65 92.11 90.91 91.89 92.50 86.67 94.12 94.44 92.86 87.80 88.10 90.62 91.89 93.18 100.00 85.00 100.00 91.67 94.29 91.18 91.43 K intron_retention CG3631 chr3R + chr3R_10705483_10705553 chr3R_10705482_10705483;chr3R_10705553_10705554 chr3R_10705178_10705482;chr3R_10705554_10705765 33.24 NA NA 40.00 NA NA 41.67 18.75 35.71 NA NA 15.00 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA 20.00 NA NA 46.67 NA NA NA NA NA NA NA 43.75 NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA K multi_cassette Cda5 chr2L - chr2L_29069_34557 chr2L_29069_30393;chr2L_33271_33844;chr2L_34289_34557 chr2L_30394_33270;chr2L_33845_34288 chr2L_29024_29068;chr2L_34558_34596 100.00 NA NA NA NA NA NA NA 0.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG31523,I_chr3R_294322_294479,RI_chr3R_294322_296218,I_chr3R_294322_297157,I_chr3R_294322_298014,I_chr3R_294322_300973,RI_chr3R_294322_300982,I_chr3R_294322_304799,RI_chr3R_298911_304354 chr3R - chr3R_294322_304674 chr3R_294322_304354 chr3R_294222_294321;chr3R_304675_304743 100.00 100.00 100.00 100.00 100.00 NA 100.00 98.39 100.00 97.96 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 97.92 96.67 99.23 98.84 NA 96.67 100.00 100.00 100.00 97.83 100.00 100.00 100.00 K intron_retention TppII,GLaz chr2R - chr2R_9042716_9042773 chr2R_9042715_9042716;chr2R_9042773_9042774 chr2R_9042552_9042715;chr2R_9042774_9042979 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 7.14 4.65 3.51 0.00 0.00 3.51 0.00 1.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG18619,I_chr2L_10264634_10264770,RI_chr2L_10265562_10265628 chr2L + chr2L_10264886_10264946 chr2L_10264890_10264946 chr2L_10264947_10265012;chr2L_10264822_10264885 40.43 37.70 44.44 32.76 35.48 40.38 43.84 39.85 36.17 45.65 39.02 40.50 53.62 38.10 40.58 41.58 35.71 48.08 34.57 47.97 37.84 54.05 45.76 41.03 38.46 36.05 39.56 45.24 47.37 33.33 40.28 44.57 36.84 41.35 40.35 51.11 50.00 41.18 40.96 37.91 37.25 38.68 40.43 42.11 37.84 40.51 39.64 50.00 40.44 43.48 37.31 42.59 40.43 37.70 43.48 35.96 34.57 49.04 K intron_retention CG12065,CE_chrX_8469528_8477573 chrX + chrX_8480279_8480584 chrX_8480278_8480279;chrX_8480584_8480585 chrX_8480019_8480278;chrX_8480585_8480590 20.00 21.05 43.75 6.60 18.75 25.00 28.57 20.00 28.57 NA 7.14 8.09 15.79 31.25 NA 35.71 19.05 NA 35.29 9.42 NA 11.48 33.33 10.71 8.00 6.67 41.38 8.00 15.00 NA 20.00 0.00 10.71 20.00 38.46 9.52 16.67 14.81 32.35 30.30 12.50 24.24 25.00 16.22 0.00 20.00 20.00 12.50 31.03 29.17 35.71 19.05 NA 25.00 20.69 13.64 16.67 20.00 K intron_retention CG18596,I_chr3R_18203637_18203690,I_chr3R_18209085_18209133 chr3R + chr3R_18205327_18205387 chr3R_18205326_18205327;chr3R_18205387_18205388 chr3R_18205156_18205326;chr3R_18205388_18205499 0.00 5.56 0.00 0.00 NA 0.00 9.33 4.35 2.08 0.00 0.00 4.65 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 6.90 3.85 0.00 5.26 0.00 7.89 3.57 20.00 0.00 13.79 8.00 0.00 0.00 0.00 12.12 0.00 0.00 0.00 0.00 5.77 0.00 0.00 2.63 4.17 4.35 0.00 2.63 5.13 2.67 3.33 0.00 0.00 0.00 5.88 2.22 0.00 0.00 N jcn_only_AD Uhg3,noncoding_4006,E_chr2L_20647810_20648188,R_chr2L_20648002_20648194,snoRNA:Me28S-C2645b chr2L + chr2L_20647789_20648188 chr2L_20648014_20648188 chr2L_20648189_20648248;chr2L_20647710_20647788 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 63.22 79.03 100.00 100.00 100.00 100.00 100.00 100.00 81.94 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 60.98 100.00 100.00 K intron_retention unc-13,I_chr4_897821_902468,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_897821_903586 chr4_897820_897821;chr4_903586_903587 chr4_897721_897820;chr4_903587_903686 36.84 41.67 NA 32.81 25.00 42.86 29.41 33.33 50.00 NA NA 35.71 83.33 43.75 36.84 52.17 57.14 71.43 44.44 28.57 NA 14.29 30.43 31.25 20.00 40.00 29.55 36.84 36.00 31.25 21.43 NA 37.50 44.12 35.71 13.79 35.29 NA NA 41.18 36.84 37.93 53.33 28.57 NA 40.00 NA 35.71 42.11 76.92 22.22 45.45 NA NA 52.63 36.36 41.67 66.67 K alternative_acceptor LanA,I_chr3L_6208090_6208194 chr3L - chr3L_6208090_6208194 chr3L_6208112_6208194 chr3L_6208195_6208294;chr3L_6207990_6208089 99.78 99.72 99.78 100.00 99.78 99.76 99.71 99.88 99.93 100.00 99.78 99.70 99.84 100.00 99.82 100.00 99.60 99.78 100.00 99.90 99.78 99.77 99.57 99.75 98.95 100.00 99.81 100.00 99.52 99.79 97.75 100.00 99.63 99.88 100.00 99.73 99.65 99.70 100.00 99.78 100.00 99.69 100.00 100.00 98.55 99.12 100.00 99.58 99.89 100.00 99.77 99.56 99.63 100.00 99.84 100.00 100.00 99.52 K intron_retention tmod,I_chr3R_26398795_26402319,I_chr3R_26402545_26402900,I_chr3R_26402561_26402900,I_chr3R_26403024_26403083 chr3R + chr3R_26398795_26402900 chr3R_26398794_26398795;chr3R_26402900_26402901 chr3R_26398695_26398794;chr3R_26402901_26403000 3.37 1.41 5.56 1.43 3.12 0.00 4.84 5.36 3.92 3.33 15.15 8.00 0.00 2.00 4.00 3.70 6.98 4.88 2.04 5.08 10.53 3.00 3.97 3.74 4.55 0.00 5.10 5.56 0.00 4.44 0.00 4.23 2.22 5.41 2.86 0.00 2.26 2.70 3.12 2.22 0.00 3.85 8.57 3.03 2.70 3.70 2.83 3.37 3.49 1.75 4.35 3.77 3.12 2.44 3.39 4.88 1.84 2.13 K intron_retention TfIIA-L chr3R + chr3R_23079348_23080249 chr3R_23079347_23079348;chr3R_23080249_23080250 chr3R_23079199_23079347;chr3R_23080250_23080450 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.37 0.26 0.00 1.20 1.06 0.00 0.60 0.82 1.05 0.00 0.00 0.00 0.37 0.00 5.13 0.98 0.00 1.40 0.00 0.39 0.00 0.00 0.54 0.00 0.00 0.00 0.66 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.83 1.40 0.00 0.48 1.57 0.00 0.00 1.03 0.38 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.71 K alternative_donor PPP4R2r chrX + chrX_10374058_10374116 chrX_10374062_10374116 chrX_10374117_10375969;chrX_10373869_10374057 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 1.90 0.00 0.00 0.00 0.00 0.00 1.92 1.49 0.00 0.00 0.00 1.37 0.00 0.00 2.90 3.03 2.94 0.00 2.27 0.00 4.76 0.00 6.06 NA 0.00 1.47 2.78 2.94 2.17 0.00 1.92 0.00 3.57 1.23 2.70 0.00 0.00 0.00 2.38 NA 1.27 0.00 1.67 0.00 0.00 2.38 1.67 0.00 2.63 0.00 K alternative_donor CoRest,I_chrX_19416977_19417035 chrX + chrX_19416603_19417035;chrX_19416431_19417035;chrX_19416669_19417035;chrX_19416423_19417035 chrX_19416977_19417035 chrX_19417036_19417135;chrX_19416201_19416422 4.12 1.56 2.78 5.77 5.00 7.32 10.53 5.77 4.94 2.94 2.94 6.25 2.94 2.94 4.44 6.38 8.33 7.14 5.56 4.12 3.03 8.82 2.20 2.53 2.27 5.66 1.56 3.85 2.04 4.00 9.30 4.88 5.45 5.00 3.64 1.54 1.87 1.12 3.57 3.92 8.70 4.49 7.14 4.00 8.33 5.88 1.92 5.17 4.94 2.04 2.13 2.27 5.26 2.08 5.66 0.00 2.44 4.35 K intron_retention CG11168,I_chr3R_20745770_20745849,I_chr3R_20745983_20746038 chr3R + chr3R_20745770_20746038 chr3R_20745769_20745770;chr3R_20746038_20746039 chr3R_20745670_20745769;chr3R_20746039_20746053 52.86 NA NA 30.77 NA NA NA 36.84 66.67 NA NA 66.67 NA NA NA NA NA NA NA 50.00 NA 76.19 NA 41.67 NA NA 54.55 NA NA NA 75.00 NA 64.71 54.55 NA NA 50.00 NA 53.33 60.87 NA 40.00 NA NA NA NA NA 52.38 50.00 NA NA 41.67 NA NA 66.67 NA NA 35.29 K jcn_only_AA fra chr2R + chr2R_8445281_8445922;chr2R_8445281_8446375 chr2R_8445281_8445949 chr2R_8445263_8445280;chr2R_8446376_8446583 20.24 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA 16.67 NA 50.00 NA NA NA NA NA NA NA K intron_retention CG34349,I_chr3R_20889373_20889414 chr3R + chr3R_20882905_20883346 chr3R_20882904_20882905;chr3R_20883346_20883347 chr3R_20882812_20882904;chr3R_20883347_20883626 0.00 NA NA 3.03 NA NA 0.00 16.67 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA 5.56 NA 0.00 NA NA NA NA NA NA NA N cassette spri,I_chrX_10404621_10469422,I_chrX_10413811_10440661,I_chrX_10417598_10440661 chrX - chrX_10413811_10438418 chrX_10413811_10416835;chrX_10417595_10438418 chrX_10416836_10417594 chrX_10413711_10413810;chrX_10438419_10438429 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 89.16 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Src42A,I_chr2R_1873786_1874076,I_chr2R_1874172_1885268,RI_chr2R_1880883_1885268,CG14471,I_chr2R_1895337_1896567 chr2R + chr2R_1874172_1896567 chr2R_1874171_1874172;chr2R_1896567_1896568 chr2R_1874077_1874171;chr2R_1896568_1896667 0.00 0.00 0.00 0.70 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA sgg,I_chrX_2529065_2563945,I_chrX_2536127_2563666,I_chrX_2555127_2563666,I_chrX_2561695_2562135,I_chrX_2563342_2563666,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2555127_2563945;chrX_2555127_2555372 chrX_2555127_2563666 chrX_2555119_2555126 1.93 0.00 0.00 0.00 NA 2.94 0.00 8.06 2.99 NA 0.00 0.00 NA 3.45 3.23 0.00 2.78 7.14 2.33 0.00 NA 1.85 3.28 0.00 NA 2.56 0.00 NA 0.00 2.70 0.00 0.00 2.00 5.08 4.55 0.00 4.55 0.00 0.00 0.00 0.00 1.52 3.45 3.28 3.57 0.00 6.06 0.00 2.63 6.25 5.41 0.00 NA 0.00 2.33 3.33 4.55 0.00 K intron_retention CG7987,RI_chr3R_10400799_10401492 chr3R - chr3R_10398860_10398931 chr3R_10398859_10398860;chr3R_10398931_10398932 chr3R_10398145_10398859;chr3R_10398932_10399356 0.00 0.00 0.00 4.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 11.11 2.38 2.99 4.35 4.29 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 1.75 0.00 0.00 6.45 0.00 2.70 0.00 2.88 3.28 1.25 0.00 0.00 2.63 0.00 0.00 0.00 0.00 K jcn_only_AA Acon,I_chr2L_21168805_21168878,I_chr2L_21168805_21170166 chr2L + chr2L_21168805_21170166;chr2L_21168805_21168878 chr2L_21168805_21170190 chr2L_21168705_21168804;chr2L_21170191_21170266 99.80 100.00 99.72 100.00 100.00 100.00 100.00 100.00 99.79 99.67 100.00 99.65 100.00 99.26 99.70 99.03 100.00 100.00 99.58 99.64 100.00 99.60 99.81 99.69 100.00 98.60 100.00 99.69 100.00 100.00 99.44 99.31 100.00 100.00 99.50 99.56 100.00 99.30 99.23 98.62 100.00 99.80 100.00 100.00 99.67 99.63 99.51 99.72 99.83 100.00 98.98 99.53 100.00 100.00 99.66 99.21 100.00 100.00 N alternative_donor myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_715043_716322;chr4_715043_716708;chr4_715043_716482;chr4_715043_715839 chr4_715043_716613 chr4_714007_715042;chr4_716709_716712 0.00 11.11 0.00 0.00 0.00 0.00 7.69 3.45 9.76 0.00 0.00 8.33 20.00 5.56 12.50 2.63 8.33 11.11 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 NA 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 8.33 11.11 NA 0.00 0.00 0.00 3.70 33.33 9.09 11.11 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD mfrn,I_chr3R_23770737_23770817,I_chr3R_23771063_23771153,I_chr3R_23771063_23772599 chr3R - chr3R_23771063_23772915;chr3R_23771063_23771153 chr3R_23771063_23771137 chr3R_23770974_23771062;chr3R_23772916_23773724 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Myo61F chr3L + chr3L_1324630_1325994 chr3L_1324629_1324630;chr3L_1325994_1325995 chr3L_1324566_1324629;chr3L_1325995_1326139 0.00 0.00 0.00 0.00 0.00 0.00 3.19 1.27 2.74 0.00 0.00 0.00 1.67 0.00 0.00 1.90 5.45 3.92 0.00 1.60 0.00 2.47 1.79 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 2.40 0.00 0.00 0.00 0.00 1.69 1.85 0.00 1.49 1.67 0.00 0.00 0.00 0.00 4.92 1.31 0.00 0.81 0.00 0.00 2.86 0.00 1.59 0.00 0.00 K intron_retention Aats-ala-m chr3L + chr3L_5139699_5139757 chr3L_5139698_5139699;chr3L_5139757_5139758 chr3L_5139525_5139698;chr3L_5139758_5139903 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 6.90 0.00 9.09 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA 0.00 K intron_retention CG5414,F_chr3L_16093561_16093627 chr3L + chr3L_16095831_16095885 chr3L_16095830_16095831;chr3L_16095885_16095886 chr3L_16095494_16095830;chr3L_16095886_16096582 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 15.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention I_chr2R_8821104_8821171,CG13322,I_chr2R_8823775_8823829 chr2R - chr2R_8823766_8823815 chr2R_8823765_8823766;chr2R_8823815_8823816 chr2R_8823675_8823765;chr2R_8823816_8824025 100.00 95.24 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 95.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 96.15 97.50 96.15 100.00 96.88 100.00 94.12 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 95.45 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 94.74 95.83 97.44 100.00 97.67 94.44 100.00 100.00 95.83 100.00 100.00 100.00 K intron_retention CG2943 chr3R - chr3R_3730067_3730125 chr3R_3730066_3730067;chr3R_3730125_3730126 chr3R_3729914_3730066;chr3R_3730126_3730316 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6707 chr3L - chr3L_9889223_9889278 chr3L_9889222_9889223;chr3L_9889278_9889279 chr3L_9889058_9889222;chr3L_9889279_9889488 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG13344 chr2R + chr2R_9749741_9749802 chr2R_9749741_9749799 chr2R_9749738_9749740;chr2R_9749803_9750933 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA N cassette twin,RI_chr3R_20032242_20045321 chr3R - chr3R_20046066_20046836;chr3R_20046066_20047514 chr3R_20046066_20046253;chr3R_20046286_20046836,chr3R_20046286_20047514 chr3R_20046254_20046285 chr3R_20045937_20046065;chr3R_20047515_20047647 100.00 NA 100.00 100.00 NA NA 43.75 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 92.86 100.00 NA 100.00 100.00 85.71 NA NA NA NA 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 85.71 NA NA 100.00 NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA K intron_retention nimB1 chr2L + chr2L_13964457_13964534 chr2L_13964456_13964457;chr2L_13964534_13964535 chr2L_13964370_13964456;chr2L_13964535_13964602 4.44 5.56 5.13 9.09 4.44 3.57 4.76 8.99 4.76 0.00 0.00 5.56 9.09 7.55 5.00 12.90 9.30 3.12 12.77 6.21 5.00 0.00 4.44 0.00 0.00 0.00 3.85 NA 0.00 0.00 1.35 5.26 2.38 3.57 4.17 0.00 3.08 5.41 2.78 6.90 5.13 5.21 0.00 0.00 0.00 3.85 5.00 5.88 7.62 6.90 4.88 8.33 0.00 3.64 4.84 3.12 4.44 1.94 K intron_retention dikar,I_chr3L_6735150_6735653 chr3L - chr3L_6735150_6736125 chr3L_6735149_6735150;chr3L_6736125_6736126 chr3L_6735050_6735149;chr3L_6736126_6736231 0.00 NA NA NA NA NA NA 5.88 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 9.52 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention RI_chr3R_75576_75628,CG14644 chr3R - chr3R_77965_78019 chr3R_77964_77965;chr3R_78019_78020 chr3R_77625_77964;chr3R_78020_78436 9.09 NA NA 12.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 9.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG10082,E_chr2R_17533874_17544072,RI_chr2R_17537544_17537615,I_chr2R_17543813_17543881 chr2R + chr2R_17540069_17541147;chr2R_17540069_17540723;chr2R_17540069_17542279 chr2R_17540069_17540417 chr2R_17539942_17540068 0.00 0.00 0.00 5.88 0.00 1.89 0.00 0.00 0.84 0.00 0.00 1.11 0.00 0.00 0.00 3.85 1.85 2.17 0.00 0.90 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 1.12 1.45 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.88 0.00 2.22 0.00 0.00 0.00 1.52 0.00 K alternative_donor fs(1)h,I_chrX_7938425_7938871,I_chrX_7938425_7938878,I_chrX_7938449_7944184,I_chrX_7950171_7952371,I_chrX_7954192_7955240 chrX - chrX_7938425_7944184;chrX_7938425_7938871 chrX_7938425_7938878 chrX_7938366_7938424;chrX_7944185_7944284 14.71 17.74 15.09 19.32 18.75 20.45 18.07 27.88 15.83 2.13 19.44 26.27 18.37 15.09 15.79 10.31 26.09 15.79 30.00 21.24 13.51 12.50 11.76 14.12 7.69 23.26 10.29 5.80 13.24 6.58 18.52 19.44 9.26 21.15 9.72 8.24 10.00 10.53 6.67 9.01 20.97 19.01 28.26 11.11 8.62 10.77 9.38 20.83 14.71 9.84 13.76 8.16 5.66 11.43 17.65 16.33 10.81 20.00 K intron_retention CG4557 chrX + chrX_6741431_6741489 chrX_6741430_6741431;chrX_6741489_6741490 chrX_6741203_6741430;chrX_6741490_6741946 3.33 3.77 0.00 9.76 3.45 0.00 0.00 4.55 2.99 0.00 0.00 4.00 7.69 0.00 9.52 2.50 4.17 3.03 6.25 5.21 10.34 6.06 4.11 4.08 6.45 3.45 6.00 0.00 14.29 0.00 0.00 4.76 0.00 3.85 5.56 0.00 3.08 0.00 1.35 0.00 2.56 0.00 3.45 4.65 8.77 4.41 0.00 0.00 6.45 1.79 0.00 0.00 3.33 3.57 2.70 3.77 3.28 2.04 K alternative_acceptor CG9586 chr2L - chr2L_9165843_9165942 chr2L_9165873_9165942 chr2L_9165943_9166164;chr2L_9165830_9165842 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.70 0.44 1.16 0.00 0.97 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.76 1.14 0.00 0.00 0.48 0.00 0.00 0.56 0.68 1.31 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.49 0.50 0.00 0.00 0.61 1.18 0.00 0.50 0.60 0.90 0.00 0.00 0.53 K intron_retention CG30005,I_chr2R_5495525_5495581 chr2R + chr2R_5494990_5495040 chr2R_5494989_5494990;chr2R_5495040_5495041 chr2R_5494720_5494989;chr2R_5495041_5495143 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.64 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Arp14D,RE_chrX_16445264_16446372,E_chrX_16447426_16447500 chrX - chrX_16447592_16447813 chrX_16447591_16447592;chrX_16447813_16447814 chrX_16447501_16447591;chrX_16447814_16447979 97.67 95.56 98.51 91.46 96.55 96.23 98.55 95.74 98.17 97.22 97.78 97.27 97.67 98.21 100.00 96.00 100.00 93.44 95.24 95.27 98.00 98.61 95.65 97.92 97.22 98.53 95.74 96.30 98.72 96.10 100.00 100.00 99.19 97.20 100.00 96.10 97.62 100.00 100.00 99.10 98.97 99.17 98.21 98.04 96.10 97.16 95.38 96.97 96.80 98.04 97.06 97.73 97.67 94.29 100.00 96.36 97.73 98.21 K intron_retention nct,I_chr3R_20679262_20679308 chr3R + chr3R_20679809_20679946 chr3R_20679808_20679809;chr3R_20679946_20679947 chr3R_20679598_20679808;chr3R_20679947_20680024 4.02 1.12 4.62 5.06 6.06 0.00 3.62 9.33 4.71 2.70 6.52 3.01 0.00 5.56 7.25 5.31 5.26 6.06 5.00 3.66 4.35 6.85 3.55 2.99 4.60 5.80 3.25 0.00 11.48 3.12 5.63 5.77 1.92 4.20 3.28 8.45 5.26 2.00 3.87 2.75 5.56 4.02 6.06 3.70 5.41 0.00 4.26 5.26 4.35 3.57 2.13 2.60 3.39 2.50 1.37 1.94 2.13 0.00 K alternative_donor Cap-H2 chr3R + chr3R_6591282_6591749 chr3R_6591616_6591749 chr3R_6591750_6591850;chr3R_6591236_6591281 95.00 100.00 89.47 100.00 100.00 92.31 94.44 100.00 92.00 100.00 100.00 92.00 87.50 100.00 100.00 100.00 100.00 93.75 95.00 91.67 100.00 83.33 95.24 85.71 100.00 100.00 80.95 80.00 100.00 90.91 100.00 88.89 100.00 96.00 92.86 100.00 100.00 100.00 94.12 95.65 100.00 96.30 93.33 93.33 75.00 93.33 81.82 92.31 80.65 93.33 89.47 91.67 100.00 100.00 95.24 80.00 100.00 94.44 K cassette cta,R_chr2L_22875331_22883490,I_chr2L_22882756_22883485 chr2L + chr2L_22875326_22883485 chr2L_22875326_22879528;chr2L_22879657_22883485 chr2L_22879529_22879656 chr2L_22875231_22875325;chr2L_22883486_22883551 0.80 0.00 0.00 1.00 0.00 1.61 0.58 1.24 0.80 0.00 0.00 0.93 0.00 1.30 1.41 2.21 0.00 0.00 0.92 1.10 0.00 2.13 2.15 1.47 2.56 2.13 2.15 2.78 0.00 0.00 1.47 0.00 0.00 0.75 2.08 4.35 0.00 0.00 2.33 1.54 3.85 0.74 1.67 0.00 0.00 0.00 0.00 3.23 1.37 0.00 1.32 0.00 0.00 5.26 0.00 2.38 0.00 0.00 K cassette wdb,I_chr3R_23394314_23406731,I_chr3R_23394314_23406794,I_chr3R_23394314_23407159,RI_chr3R_23394314_23407186,I_chr3R_23394314_23407412,I_chr3R_23394314_23407715,I_chr3R_23394314_23407721,RI_chr3R_23406048_23406731,RI_chr3R_23406048_23406794,I_chr3R_23406048_23406928,RI_chr3R_23406048_23407402 chr3R - chr3R_23394314_23406865;chr3R_23394314_23407402;chr3R_23394314_23406928;chr3R_23394314_23407723 chr3R_23394314_23405878;chr3R_23406048_23407402,chr3R_23406048_23406928,chr3R_23406048_23407723,chr3R_23406048_23406865 chr3R_23405879_23406047 chr3R_23394214_23394313;chr3R_23407724_23407815 13.81 11.33 18.92 12.54 11.40 12.98 16.96 13.06 14.14 7.94 17.31 18.39 4.70 14.77 11.49 14.12 14.47 9.22 10.00 8.35 15.22 47.06 21.30 13.81 14.17 22.16 12.68 11.11 17.65 10.66 14.97 9.66 7.04 15.71 15.54 19.70 13.17 14.94 10.95 12.53 11.11 14.73 13.97 16.17 11.72 11.00 14.40 8.11 16.29 18.85 16.50 13.18 11.22 18.57 12.33 12.61 13.91 5.77 K alternative_acceptor CaMKI,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,RI_chr4_467374_467424,RI_chr4_467482_467543,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_467374_467446 chr4_467374_467424 chr4_467365_467373;chr4_467447_467481 75.00 NA NA 87.50 NA NA 77.78 NA 46.15 NA NA 75.00 NA NA NA NA NA NA 87.50 64.29 NA NA NA NA NA NA NA NA NA NA NA NA NA 64.29 NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA 81.82 NA NA NA NA NA NA NA NA NA K intron_retention Rfx,I_chr3R_6198928_6200931 chr3R - chr3R_6191392_6191457 chr3R_6191391_6191392;chr3R_6191457_6191458 chr3R_6191227_6191391;chr3R_6191458_6191695 52.63 38.46 NA 73.08 NA 60.00 NA 53.33 45.45 50.00 NA 66.67 NA NA 69.23 NA NA NA NA 48.48 NA 88.24 37.04 47.83 58.82 90.00 57.14 NA 50.00 38.10 NA NA 40.00 53.33 47.37 68.42 45.24 37.50 61.29 60.00 NA 63.64 NA 29.17 NA 35.71 39.29 56.25 57.14 52.63 45.16 50.00 25.00 57.14 66.67 54.55 36.84 NA K jcn_only_AA CG1637,I_chrX_10767807_10771447,I_chrX_10769621_10769824 chrX - chrX_10766073_10771447;chrX_10770030_10771447;chrX_10770033_10771447 chrX_10767742_10771447 chrX_10771448_10771547 4.91 3.28 5.95 6.15 4.69 10.32 3.90 6.03 4.38 2.74 2.65 4.21 1.56 6.71 7.45 8.93 4.27 4.24 6.88 5.29 0.87 8.28 9.47 7.93 2.36 1.22 7.54 2.52 4.07 5.26 6.20 3.70 3.48 8.09 3.50 4.91 10.26 7.04 4.98 3.86 5.66 5.92 1.89 4.57 5.80 5.73 4.61 3.64 3.51 5.10 7.94 7.14 2.86 5.20 5.53 4.39 3.14 2.91 K intron_retention CG18273,I_chrX_377079_377135 chrX - chrX_377079_377300 chrX_377078_377079;chrX_377300_377301 chrX_376979_377078;chrX_377301_377861 0.00 0.00 NA 11.11 0.00 0.00 0.00 0.00 0.00 NA NA 3.12 7.14 0.00 0.00 0.00 0.00 0.00 0.00 4.88 0.00 0.00 11.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 N alternative_donor RhoGAP18B chrX - chrX_19038625_19040000 chrX_19038625_19038713 chrX_19038597_19038624;chrX_19040001_19040175 8.00 15.00 9.09 7.41 5.00 6.67 12.50 13.16 11.11 12.50 5.26 7.69 8.70 7.69 4.55 13.04 5.26 8.70 11.11 11.11 6.67 10.53 6.67 8.00 8.70 5.88 8.00 22.22 4.35 4.55 13.04 9.09 5.88 10.00 15.00 7.41 11.11 5.26 7.32 5.88 11.11 8.82 10.53 8.33 3.45 4.55 5.00 8.70 7.69 27.78 5.00 7.14 3.85 4.76 10.00 4.76 4.35 9.09 K intron_retention RpII215,I_chrX_11466174_11466223 chrX - chrX_11458639_11458766 chrX_11458638_11458639;chrX_11458766_11458767 chrX_11456752_11458638;chrX_11458767_11461011 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.81 0.00 0.89 2.27 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.96 0.00 0.00 0.00 0.00 0.00 0.00 K cassette pan chr4 + chr4_115242_118447;chr4_115242_120031 chr4_115242_115462;chr4_115629_120031,chr4_115629_118447 chr4_115463_115628 chr4_115049_115241;chr4_120032_120101 97.22 100.00 100.00 94.03 95.83 100.00 95.65 92.96 98.61 94.44 93.55 97.96 95.83 96.55 97.30 98.04 96.67 100.00 97.22 98.53 96.43 90.62 96.55 94.74 100.00 87.10 94.74 92.86 93.75 92.31 97.22 100.00 100.00 97.10 94.44 100.00 95.83 100.00 100.00 86.67 100.00 96.49 96.30 90.91 100.00 91.67 100.00 96.97 98.21 100.00 100.00 100.00 100.00 100.00 91.18 100.00 100.00 100.00 N intron_retention SMSr chr3L - chr3L_7369009_7370035 chr3L_7369008_7369009;chr3L_7370035_7370036 chr3L_7368505_7369008;chr3L_7370036_7370266 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 64.52 NA NA 100.00 100.00 47.06 NA 100.00 100.00 NA 66.67 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 60.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 100.00 NA 63.16 NA 100.00 100.00 100.00 K intron_retention sba,I_chr3R_19721149_19722571 chr3R - chr3R_19721220_19721930 chr3R_19721219_19721220;chr3R_19721930_19721931 chr3R_19720204_19721219;chr3R_19721931_19722276 9.68 NA NA 35.71 NA NA NA 12.50 9.09 0.00 NA NA NA NA 14.29 NA NA 0.00 NA 17.65 NA 10.26 0.00 4.76 NA NA 12.50 3.33 0.00 NA NA NA 0.00 NA NA 12.50 8.00 NA 4.76 7.41 NA 16.67 NA 5.00 NA NA 20.00 NA 11.76 NA 13.33 NA NA NA 14.29 NA NA NA K cassette Taf1 chr3R + chr3R_2479013_2480191 chr3R_2479013_2479744;chr3R_2479844_2480191 chr3R_2479745_2479843 chr3R_2478682_2479012;chr3R_2480192_2480386 20.41 13.79 21.88 19.05 18.52 23.08 12.12 26.47 21.15 26.09 12.00 23.68 16.67 19.05 13.79 24.14 18.75 23.08 25.00 20.41 15.00 17.39 20.00 23.91 12.00 22.22 23.40 15.38 12.82 18.18 38.89 37.93 32.08 15.79 16.67 7.69 18.46 16.67 19.05 27.08 21.21 19.67 35.71 25.00 28.57 29.55 23.26 29.41 25.00 18.92 16.67 23.08 16.67 23.08 28.57 18.00 17.78 21.95 N jcn_only_AD Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11835112_11835624;chr2R_11835112_11835668 chr2R_11835112_11835509 chr2R_11834432_11835111;chr2R_11835669_11836215 91.30 91.07 87.39 91.36 91.82 91.03 96.70 94.23 95.04 92.52 90.00 90.10 82.26 89.74 92.86 88.17 95.18 91.95 93.62 89.60 91.46 85.17 90.73 90.55 96.43 98.86 87.91 91.86 94.17 89.17 94.19 91.11 88.52 91.30 87.31 92.54 90.48 92.43 91.78 91.43 95.28 90.39 94.12 94.69 89.11 86.44 93.00 90.62 95.21 86.29 91.67 89.34 86.44 90.79 95.61 89.72 94.62 91.30 K intron_retention CG1233 chr3L + chr3L_361700_361752 chr3L_361699_361700;chr3L_361752_361753 chr3L_361518_361699;chr3L_361753_362341 52.63 43.48 46.15 78.12 64.29 48.15 56.25 52.78 52.27 26.67 58.33 48.89 52.63 59.09 48.15 67.86 71.43 63.64 62.50 46.81 53.33 58.33 69.05 45.16 60.87 72.00 58.33 76.67 57.69 61.11 67.57 50.00 45.07 57.89 44.00 86.11 48.48 50.00 44.68 54.55 72.73 56.00 71.43 47.92 35.29 45.16 44.00 50.54 47.22 55.00 55.26 52.63 25.81 13.33 44.44 35.00 46.15 40.38 K intron_retention CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789694_9789790 chr2L_9789693_9789694;chr2L_9789790_9789791 chr2L_9789681_9789693;chr2L_9789791_9789832 32.66 NA NA 22.73 NA NA 36.36 35.71 44.44 NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA 32.00 25.00 NA NA NA NA NA 12.50 NA 6.67 NA NA NA 26.32 NA NA NA NA NA NA NA NA 33.33 NA 40.00 NA NA NA NA NA NA NA K alternative_acceptor Cap-D3,I_chr2L_5534987_5535054 chr2L + chr2L_5534987_5535054 chr2L_5534987_5535049 chr2L_5534887_5534986;chr2L_5535055_5535154 100.00 100.00 90.91 100.00 92.86 90.91 100.00 95.65 100.00 NA 100.00 100.00 NA 90.91 100.00 92.86 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 NA 92.31 100.00 90.91 100.00 100.00 92.86 100.00 100.00 94.44 NA 100.00 92.31 NA 94.74 94.12 88.89 96.88 100.00 100.00 100.00 100.00 100.00 100.00 94.74 92.86 93.75 88.89 NA NA 91.67 100.00 100.00 95.00 K cassette CG33558,I_chr2R_2816779_2817354,EI_chr2R_2820947_2821570,CREI_chr2R_2832933_2850384 chr2R - chr2R_2822614_2822927 chr2R_2822614_2822719;chr2R_2822801_2822927 chr2R_2822720_2822800 chr2R_2822311_2822613;chr2R_2822928_2823185 96.55 96.30 94.74 100.00 100.00 88.89 66.67 96.15 97.83 100.00 90.91 97.50 100.00 100.00 100.00 100.00 100.00 100.00 93.33 96.88 100.00 100.00 95.45 97.44 95.45 100.00 97.30 100.00 92.86 92.68 93.33 94.44 96.55 96.30 94.29 82.14 97.73 92.31 97.37 92.45 94.12 94.59 94.74 90.62 95.00 97.62 100.00 96.77 96.88 97.78 97.30 95.24 94.74 100.00 100.00 96.55 93.75 91.30 K intron_retention Aats-asp chr2R + chr2R_8770038_8770246 chr2R_8770037_8770038;chr2R_8770246_8770247 chr2R_8770015_8770037;chr2R_8770247_8770658 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.22 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive CG34413,I_chr2R_20771136_20772048,I_chr2R_20772104_20773774,RI_chr2R_20772104_20774745,C_chr2R_20772691_20773500,I_chr2R_20773500_20774745 chr2R + chr2R_20771136_20772048,chr2R_20774668_20774745 chr2R_20771136_20771196,chr2R_20771258_20774745 chr2R_20772049_20774667 chr2R_20771197_20771257 chr2R_20771036_20771135;chr2R_20774746_20774845 87.80 94.12 94.74 72.00 93.33 91.30 76.00 90.00 87.50 57.14 68.75 88.24 78.57 90.00 90.00 87.50 85.71 77.78 90.91 94.44 88.89 97.62 87.80 92.11 82.61 58.62 95.24 66.67 70.83 85.19 91.67 76.19 93.55 79.31 93.75 61.29 83.33 90.00 84.38 97.67 81.82 92.31 81.25 94.29 91.30 90.32 93.33 86.36 92.00 86.67 83.87 84.62 91.30 85.00 83.33 95.83 80.95 96.88 K intron_retention CG17273,I_chr3R_16652066_16655997,REI_chr3R_16652421_16653701,I_chr3R_16653805_16654088 chr3R - chr3R_16652066_16655997 chr3R_16652065_16652066;chr3R_16655997_16655998 chr3R_16651966_16652065;chr3R_16655998_16656097 44.13 NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 87.50 NA 68.75 35.71 NA 28.57 NA 42.11 57.14 36.00 NA NA NA NA NA NA NA 50.00 NA 29.41 46.15 NA NA NA NA 41.67 NA NA 63.64 NA 36.36 NA NA NA NA NA NA NA NA K intron_retention None chrU + chrU_1184446_1184504 chrU_1184445_1184446;chrU_1184504_1184505 0.00 0.00 0.00 1.27 0.00 0.00 0.40 0.28 0.52 0.00 0.00 0.00 0.00 0.68 0.48 0.75 1.10 1.32 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 2.08 4.65 2.60 0.00 0.37 0.00 0.00 0.28 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 1.10 1.93 K intron_retention CtBP chr3R + chr3R_8840915_8845063 chr3R_8840914_8840915;chr3R_8845063_8845064 chr3R_8840830_8840914;chr3R_8845064_8845536 100.00 NA 91.67 100.00 NA 100.00 100.00 97.22 100.00 NA 100.00 100.00 93.75 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 NA NA NA 92.31 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K jcn_only_AD CG6049 chr3L - chr3L_21418646_21425954 chr3L_21418646_21425939 chr3L_21417818_21418645;chr3L_21425955_21426213 34.88 35.90 36.96 44.87 33.33 46.88 29.76 38.46 44.79 NA 28.21 32.18 43.59 32.50 44.74 32.26 28.57 40.00 25.00 30.11 25.00 53.85 33.33 25.93 31.43 36.67 34.88 44.12 66.67 18.52 32.08 56.52 30.00 35.53 27.50 28.57 37.50 35.00 38.89 26.47 NA 33.71 41.67 30.43 44.83 38.46 21.62 55.88 38.20 25.00 39.62 29.17 57.14 34.62 40.82 20.00 32.50 44.44 K intron_retention MRP,I_chr2L_12727117_12729243,F_chr2L_12727117_12736035 chr2L + chr2L_12727117_12737958 chr2L_12727116_12727117;chr2L_12737958_12737959 chr2L_12727017_12727116;chr2L_12737959_12738176 10.00 10.00 16.67 23.26 10.00 12.50 18.97 29.17 24.56 5.71 18.18 30.95 25.00 22.22 16.67 20.00 17.86 8.33 23.33 38.89 26.92 2.72 10.71 7.37 7.81 17.24 9.30 3.45 1.83 5.26 7.55 0.00 5.43 17.39 6.00 9.68 7.95 2.60 5.21 11.11 5.71 17.02 19.23 5.79 6.67 9.52 4.88 7.94 26.19 3.19 8.57 13.95 11.43 9.26 31.03 5.88 9.52 12.50 K alternative_donor CG7627 chr2L - chr2L_8361199_8362283 chr2L_8361199_8362038 chr2L_8361101_8361198;chr2L_8362284_8362421 6.82 8.33 6.90 11.11 NA 14.29 14.81 7.69 9.30 7.14 NA 6.82 NA 8.33 4.76 5.56 NA 14.29 3.85 10.71 8.33 0.00 8.16 4.00 9.09 NA 2.94 11.76 0.00 4.17 3.85 NA 8.33 12.77 4.76 6.67 0.00 0.00 0.00 5.56 NA 2.63 10.53 7.32 NA 5.26 NA 0.00 9.52 0.00 4.65 10.34 NA NA 18.18 NA 0.00 5.26 K intron_retention ca,CG7802 chr3R + chr3R_25636890_25636948 chr3R_25636889_25636890;chr3R_25636948_25636949 chr3R_25636586_25636889;chr3R_25636949_25637176 0.00 0.00 0.00 4.62 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 K jcn_only_AD tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563461_565293 chr3R_563461_565232 chr3R_563195_563460;chr3R_565294_565301 20.41 NA NA NA NA NA 21.05 NA 13.33 NA NA NA NA NA NA NA NA NA 20.00 22.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.83 NA NA NA NA NA NA 19.05 NA NA NA NA NA NA NA NA NA K intron_retention CHES-1-like,I_chrX_7584030_7588818 chrX - chrX_7584030_7598810 chrX_7584029_7584030;chrX_7598810_7598811 chrX_7583930_7584029;chrX_7598811_7598961 30.77 NA NA NA NA NA NA 15.15 31.25 NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.81 NA NA NA NA NA NA NA 35.71 NA NA NA NA NA 0.00 30.77 NA NA NA NA NA NA NA NA NA K alternative_donor Pld,I_chr2R_2130639_2136916,RI_chr2R_2138358_2141112 chr2R + chr2R_2130225_2136916 chr2R_2130258_2136916 chr2R_2136917_2137016;chr2R_2130127_2130224 6.67 NA NA 14.29 NA NA NA 0.00 6.67 NA NA NA NA NA NA NA NA NA NA 5.26 NA NA NA NA NA NA NA NA NA NA NA NA NA 7.14 NA NA 0.00 NA 7.69 NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention D1,RI_chr3R_5065631_5065691,I_chr3R_5065631_5065695,I_chr3R_5065631_5065697 chr3R - chr3R_5065631_5065695 chr3R_5065630_5065631;chr3R_5065695_5065696 chr3R_5065531_5065630;chr3R_5065696_5065704 99.13 100.00 99.01 100.00 100.00 98.99 97.96 100.00 99.35 97.56 98.25 99.41 100.00 98.91 99.16 99.34 98.36 98.75 99.07 98.93 100.00 100.00 100.00 100.00 98.21 99.13 100.00 100.00 100.00 98.82 99.04 99.10 99.45 99.28 100.00 100.00 98.41 98.33 98.72 98.48 100.00 99.43 98.78 98.59 97.66 99.48 98.91 98.63 99.53 98.82 98.75 100.00 97.40 100.00 100.00 100.00 98.70 97.62 K jcn_only_AD eIF3-S10,I_chr3R_259324_259488 chr3R - chr3R_259324_259488 chr3R_259324_259420 chr3R_259224_259323;chr3R_259489_259577 100.00 99.61 99.71 99.81 100.00 100.00 100.00 100.00 99.84 99.22 99.56 99.81 100.00 100.00 99.73 100.00 100.00 100.00 100.00 99.80 99.65 99.35 99.70 99.69 100.00 100.00 100.00 99.70 99.42 100.00 99.64 99.19 100.00 100.00 100.00 99.58 99.49 100.00 100.00 100.00 100.00 99.84 100.00 100.00 99.40 98.52 100.00 100.00 99.86 100.00 99.29 100.00 99.01 100.00 100.00 99.52 100.00 99.06 K intron_retention hkl,CG10470 chr2L + chr2L_19049236_19049286 chr2L_19049235_19049236;chr2L_19049286_19049287 chr2L_19049077_19049235;chr2L_19049287_19049364 0.00 0.00 0.00 2.56 0.00 0.00 1.67 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG11357,C_chr3L_4563905_4578759 chr3L + chr3L_4542105_4542642 chr3L_4542249_4542642 chr3L_4542643_4542907;chr3L_4542085_4542104 100.00 100.00 100.00 100.00 100.00 95.83 100.00 98.89 98.84 100.00 100.00 100.00 100.00 97.92 97.44 97.92 97.62 96.77 95.74 97.83 92.86 100.00 100.00 100.00 100.00 96.77 100.00 NA NA 100.00 97.22 NA NA 98.70 100.00 100.00 100.00 100.00 88.89 94.44 NA 98.48 97.22 100.00 100.00 90.00 100.00 100.00 98.94 100.00 100.00 100.00 100.00 NA 97.14 100.00 94.12 100.00 K intron_retention R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083588_8089393 chr2L_8083587_8083588;chr2L_8089393_8089394 chr2L_8083530_8083587;chr2L_8089394_8089493 100.00 100.00 100.00 85.71 87.50 83.33 86.21 96.15 100.00 NA NA 93.55 90.00 93.75 84.62 94.44 92.86 100.00 92.31 100.00 100.00 92.86 100.00 100.00 100.00 88.89 90.00 100.00 91.67 100.00 93.33 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 91.67 100.00 78.57 100.00 NA NA NA 90.00 100.00 NA 93.33 NA NA NA 100.00 NA 100.00 100.00 K intron_retention SWAP,I_chrX_936466_936835,RI_chrX_936919_937245,RI_chrX_938935_938985,I_chrX_941459_982652 chrX + chrX_936919_937245 chrX_936918_936919;chrX_937245_937246 chrX_936836_936918;chrX_937246_937345 87.50 81.82 90.00 78.95 NA 88.89 93.75 87.50 80.95 NA NA 76.47 NA 70.00 80.00 91.67 NA 90.91 68.75 92.31 NA 87.50 81.25 76.92 88.89 NA 90.00 NA NA 90.91 83.33 NA 60.00 80.00 91.67 NA 100.00 NA 72.73 73.33 NA 90.00 NA 92.31 NA 90.91 66.67 88.89 90.00 66.67 80.00 87.50 90.91 87.50 86.67 66.67 75.00 100.00 K jcn_only_AD rudimentary,I_chrX_16561903_16561969 chrX + chrX_16561893_16561969 chrX_16561903_16561969 chrX_16561970_16562069;chrX_16561803_16561892 0.53 0.47 0.91 1.03 0.00 3.85 1.10 0.00 0.00 0.59 1.16 0.00 0.00 1.08 1.02 1.33 1.80 2.35 0.00 0.45 0.00 0.00 1.02 0.35 0.00 0.00 1.84 1.63 0.65 0.81 2.17 1.24 0.89 0.00 0.00 0.00 0.53 0.00 0.62 0.48 0.00 1.46 0.00 0.58 0.47 0.43 1.16 0.00 0.00 1.62 0.00 0.73 1.23 0.00 0.00 1.12 0.00 1.02 K intron_retention CG8108,EI_chr3L_9859462_9859590,chr3L_9859594_9859878.0 chr3L + chr3L_9859462_9859590 chr3L_9859461_9859462;chr3L_9859590_9859591 chr3L_9859414_9859461;chr3L_9859591_9859690 55.56 69.23 57.14 55.00 NA NA 50.00 78.95 50.00 NA NA 55.56 61.54 75.00 53.85 60.00 77.78 NA 91.67 40.74 35.71 66.67 52.94 47.37 46.15 NA 60.00 35.71 NA 61.11 23.81 NA 42.86 65.00 46.15 53.33 45.83 43.75 30.77 56.52 NA 70.00 66.67 42.86 NA 66.67 40.00 NA 55.56 66.67 39.13 NA NA NA 64.29 63.64 NA NA K alternative_donor d4 chr2R + chr2R_1182569_1182620;chr2R_1182563_1182620;chr2R_1182573_1182620 chr2R_1182566_1182620 chr2R_1182621_1183461;chr2R_1182302_1182562 2.17 0.00 2.17 1.49 2.44 2.63 1.64 7.41 6.80 0.00 0.00 3.92 0.00 3.12 0.00 0.00 4.17 3.45 0.00 0.00 2.94 4.08 2.13 2.38 3.12 3.45 0.00 5.13 3.85 2.50 3.45 4.55 3.33 2.00 0.00 0.00 3.57 0.00 0.00 1.54 0.00 2.86 0.00 0.00 0.00 0.00 0.00 1.96 3.33 1.75 2.17 3.57 1.82 2.56 2.50 2.22 2.35 4.05 K cassette CaMKII,I_chr4_1059085_1060638,I_chr4_1059085_1065781,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1058367_1065781 chr4_1058367_1058984;chr4_1059061_1065781 chr4_1058985_1059060 chr4_1058272_1058366;chr4_1065782_1065874 91.67 90.91 100.00 89.47 84.62 90.00 85.42 91.30 89.74 NA 100.00 87.18 61.90 100.00 80.77 97.14 95.83 100.00 93.75 100.00 90.91 85.71 91.67 91.67 75.00 92.86 82.35 83.33 55.56 100.00 96.55 90.91 87.50 95.24 90.00 93.33 100.00 NA NA 93.75 87.50 84.21 95.65 92.86 100.00 91.67 91.67 80.00 92.00 93.75 92.86 77.78 87.50 85.71 92.86 100.00 94.44 100.00 K intron_retention I_chr2R_19695638_19696332,Nxt1,RI_chr2R_19699261_19699317,CG4797 chr2R - chr2R_19699248_19699317 chr2R_19699247_19699248;chr2R_19699317_19699318 chr2R_19699179_19699247;chr2R_19699318_19699386 1.57 0.00 2.50 2.27 0.00 1.10 3.61 2.50 2.06 0.00 0.00 1.46 0.00 3.28 2.13 0.00 0.00 0.00 1.39 0.00 0.00 1.05 2.34 2.31 2.35 4.23 2.96 2.63 1.64 2.13 4.49 0.00 0.00 0.00 1.80 1.74 0.00 0.89 3.39 0.92 0.00 2.54 2.27 0.00 0.83 2.05 2.21 0.00 1.57 1.47 1.32 2.44 2.33 3.35 2.30 1.85 1.53 1.34 K intron_retention CG3714,I_chr2L_4190825_4191774,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,I_chr2L_4196780_4197306,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4196780_4197872 chr2L_4196779_4196780;chr2L_4197872_4197873 chr2L_4196715_4196779;chr2L_4197873_4197927 30.77 NA NA 30.77 NA NA 44.00 25.00 NA NA NA 17.65 NA NA NA 26.32 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 26.67 NA 75.00 NA NA NA NA NA 31.25 NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA K intron_retention Sodh-2 chr3R + chr3R_6703546_6703603 chr3R_6703545_6703546;chr3R_6703603_6703604 chr3R_6703424_6703545;chr3R_6703604_6703988 75.00 42.86 77.78 80.00 54.55 63.16 77.78 73.08 64.52 86.67 55.56 70.59 57.14 61.54 76.47 93.33 84.62 57.14 75.00 70.00 75.00 91.67 70.67 82.00 82.50 69.23 81.25 90.20 87.50 82.05 93.75 80.43 79.25 66.67 75.00 86.05 65.57 75.61 65.08 76.25 82.35 70.59 75.00 78.12 77.36 79.10 68.29 82.35 74.07 70.97 80.00 77.78 53.12 73.33 65.22 68.89 52.00 76.47 K alternative_donor mle chr2R - chr2R_1867143_1867547 chr2R_1867143_1867205 chr2R_1866824_1867142;chr2R_1867548_1867556 63.64 62.50 47.37 70.37 46.15 63.64 47.62 66.67 55.56 70.00 41.18 57.14 50.00 56.25 50.00 40.00 63.64 36.84 66.67 64.29 53.85 81.25 56.67 65.22 52.63 61.11 53.85 50.00 66.67 76.00 87.50 40.00 66.67 69.23 58.82 64.00 70.00 71.43 65.00 63.64 91.67 50.00 63.64 62.50 60.00 76.92 71.43 79.17 60.00 87.50 68.18 76.92 88.89 55.56 52.38 60.00 50.00 84.62 K jcn_only_AD scrib,I_chr3R_22362324_22363015,I_chr3R_22381374_22399575,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22362244_22363092;chr3R_22362120_22363092;chr3R_22362315_22363092;chr3R_22362224_22363092;chr3R_22362324_22363092;chr3R_22362142_22363092 chr3R_22362254_22363092 chr3R_22363093_22363115;chr3R_22362112_22362119 45.45 34.62 40.95 58.33 50.00 48.48 49.17 56.79 40.89 22.64 39.02 53.21 40.00 51.69 53.06 48.62 45.45 53.33 47.47 52.21 39.53 50.42 37.10 42.42 26.56 53.75 44.87 40.54 42.45 53.55 52.08 59.46 56.91 50.00 59.54 40.82 22.62 28.36 35.96 42.14 54.55 50.00 53.66 38.24 40.30 45.37 36.54 43.20 49.37 43.75 49.18 27.14 44.19 48.15 52.07 40.82 42.22 49.03 K jcn_only_AD CG41378,I_chr2RHet_1545717_1621473,I_chr2RHet_1545717_1621569,I_chr2RHet_1606049_1607768,RI_chr2RHet_1606049_1621284,noncoding_9480 chr2RHet - chr2RHet_1606049_1621636;chr2RHet_1606049_1621569 chr2RHet_1606049_1621473 chr2RHet_1605949_1606048;chr2RHet_1621637_1621662 97.87 98.08 97.87 NA NA 98.08 92.59 97.80 96.77 NA NA 98.50 95.74 94.64 97.96 100.00 97.14 91.89 94.55 92.98 NA 100.00 100.00 100.00 100.00 95.92 100.00 NA 100.00 94.74 98.28 93.62 92.00 95.65 100.00 100.00 100.00 100.00 97.67 96.55 96.88 95.45 97.44 98.48 87.50 98.36 100.00 97.56 97.46 100.00 100.00 100.00 100.00 97.37 94.92 100.00 98.44 92.68 K alternative_acceptor CG16838,I_chr3L_16125390_16125510 chr3L + chr3L_16125390_16125588;chr3L_16125390_16125639 chr3L_16125390_16125485 chr3L_16125290_16125389;chr3L_16125640_16126338 50.00 63.64 60.00 48.00 38.46 50.00 61.90 62.50 57.58 36.36 40.00 50.00 69.23 58.33 52.63 50.00 60.00 52.94 50.00 55.56 46.15 41.18 44.44 55.56 62.50 61.54 50.00 50.00 30.77 47.06 53.33 41.67 41.67 51.85 30.77 50.00 40.00 36.36 50.00 37.84 50.00 51.72 40.00 53.33 41.67 35.00 50.00 33.33 58.82 71.43 60.00 37.50 36.36 44.44 50.00 60.00 30.00 29.73 N jcn_only_AA Nos,I_chr2L_10826086_10826539 chr2L - chr2L_10812355_10812463 chr2L_10812415_10812463 chr2L_10812464_10812494;chr2L_10812311_10812354 47.62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 47.62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor Hsc70-4,EI_chr3R_11068693_11068772 chr3R + chr3R_11068693_11070081 chr3R_11068736_11070081 chr3R_11070082_11072336;chr3R_11068632_11068692 54.04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 63.64 NA NA NA NA NA NA NA NA NA NA NA NA NA 44.44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA RI_chr3L_3803455_3805820,CG10855,I_chr3L_3804765_3804877 chr3L - chr3L_3804751_3805820 chr3L_3804765_3805820 chr3L_3805821_3805920;chr3L_3804665_3804750 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA K intron_retention CG31716,I_chr2L_10397648_10398034 chr2L + chr2L_10399677_10399767 chr2L_10399676_10399677;chr2L_10399767_10399768 chr2L_10399595_10399676;chr2L_10399768_10400679 40.00 43.48 54.17 36.17 37.04 27.78 46.15 51.35 45.00 41.67 30.43 36.73 47.37 47.62 30.00 42.22 59.09 52.17 42.86 45.16 40.74 45.45 44.12 43.33 35.71 50.00 41.94 46.15 58.82 36.84 36.11 35.71 26.19 35.00 28.57 23.08 36.67 32.00 25.81 28.95 26.32 39.29 42.86 44.44 33.33 29.17 NA 33.33 44.44 40.00 40.00 36.00 35.71 NA 36.36 35.00 61.11 42.86 N cassette CG13900,I_chr3L_830745_830907 chr3L - chr3L_830342_830907 chr3L_830342_830621;chr3L_830715_830907 chr3L_830622_830714 chr3L_830034_830341;chr3L_830908_831007 8.13 7.73 6.99 7.14 8.94 6.67 3.15 9.50 6.37 7.03 8.73 5.85 7.61 8.13 7.10 10.75 7.82 5.37 8.58 5.49 5.98 10.18 7.95 8.86 3.04 2.41 10.43 18.06 6.34 9.12 20.24 10.24 8.00 6.78 11.16 3.02 6.38 7.73 6.94 10.22 6.87 5.75 7.20 10.20 8.59 11.61 11.24 14.04 8.96 12.02 11.89 12.01 10.17 9.55 7.55 13.87 12.12 15.26 K intron_retention Fkbp13,I_chr2R_17382832_17383162,RI_chr2R_17382832_17384137,I_chr2R_17382852_17384568 chr2R - chr2R_17382832_17384568 chr2R_17382831_17382832;chr2R_17384568_17384569 chr2R_17382752_17382831;chr2R_17384569_17384668 1.50 1.04 1.38 1.28 0.86 1.72 3.26 1.76 1.70 1.63 1.42 1.28 1.43 0.95 1.72 1.21 1.72 0.45 0.55 1.45 1.38 3.81 1.54 1.85 1.88 1.06 1.83 4.29 3.59 2.20 1.12 1.56 2.18 1.75 1.57 1.72 1.54 1.50 1.15 1.23 1.16 1.17 1.66 2.59 1.59 1.62 1.25 2.18 1.30 0.92 1.68 1.43 0.54 1.39 1.35 2.07 1.42 0.67 K alternative_donor RI_chr3R_7061265_7061322,CG31441,CG31388 chr3R + chr3R_7062211_7062271;chr3R_7062207_7062271 chr3R_7062215_7062271 chr3R_7062272_7063062;chr3R_7062165_7062206 0.00 NA NA 0.00 NA NA 0.00 0.00 4.55 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA K intron_retention Atpalpha,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16792336_16792526 chr3R_16792335_16792336;chr3R_16792526_16792527 chr3R_16792236_16792335;chr3R_16792527_16792621 100.00 NA 100.00 100.00 100.00 88.89 100.00 100.00 93.75 NA 84.62 100.00 NA NA NA 100.00 NA NA NA 92.31 NA 100.00 93.75 80.00 88.89 NA 90.91 100.00 NA 100.00 NA NA NA 100.00 NA 100.00 91.67 100.00 90.91 90.00 NA 100.00 NA NA NA 100.00 NA 90.91 93.33 NA 91.67 NA NA NA NA NA NA NA K alternative_acceptor F_chr3RHet_1879085_1900358,Alg-2 chr3RHet - chr3RHet_1898928_1898983;chr3RHet_1898930_1898983;chr3RHet_1898919_1898983 chr3RHet_1898895_1898983 chr3RHet_1898984_1899090;chr3RHet_1898558_1898894 6.25 4.35 11.90 6.56 6.25 0.00 5.17 6.85 11.29 0.00 5.56 13.24 12.12 5.71 12.50 10.39 10.00 3.85 8.70 3.57 4.55 0.00 13.64 20.00 17.65 13.89 0.00 6.25 10.00 7.69 10.61 0.00 0.00 10.94 11.11 5.88 21.43 10.00 5.00 7.41 11.76 6.25 4.35 5.88 29.41 3.57 3.85 5.88 12.50 4.17 4.35 20.83 5.88 5.00 12.96 3.57 5.88 3.23 K alternative_acceptor CG31431 chr3R + chr3R_17696730_17697693;chr3R_17696730_17697703 chr3R_17696730_17697680 chr3R_17696406_17696729;chr3R_17697704_17697862 3.42 3.67 4.10 2.59 4.17 2.78 3.21 2.37 2.93 0.00 1.79 2.97 2.94 1.56 3.65 4.73 4.30 3.15 3.03 3.46 2.20 4.55 4.35 5.21 3.49 9.68 5.22 3.28 6.06 2.33 4.85 1.96 3.30 3.21 4.76 4.76 2.25 5.45 2.02 4.17 1.49 3.80 6.10 3.31 0.00 4.04 5.19 2.63 3.83 4.48 3.42 2.97 2.33 3.92 4.20 2.47 5.33 1.72 K intron_retention cyp33,RI_chr2R_13433439_13433498,I_chr2R_13433672_13433749 chr2R + chr2R_13433672_13433744 chr2R_13433671_13433672;chr2R_13433744_13433745 chr2R_13433572_13433671;chr2R_13433745_13433946 7.14 17.65 15.00 0.00 NA 8.70 10.34 13.04 0.00 NA NA 10.26 NA 0.00 7.14 21.43 NA 0.00 9.09 6.67 NA NA 0.00 18.75 NA 0.00 20.00 NA 20.00 NA 5.26 10.53 NA 10.34 0.00 NA NA NA 0.00 0.00 5.00 6.06 11.76 NA 5.00 5.71 4.76 7.14 8.70 19.05 0.00 NA NA 7.14 8.70 0.00 0.00 10.00 K alternative_donor ben chrX + chrX_13890789_13892127;chrX_13890791_13892127;chrX_13891016_13892127;chrX_13890793_13892127;chrX_13890762_13892127;chrX_13890795_13892127;chrX_13890990_13892127;chrX_13890831_13892127;chrX_13890768_13892127 chrX_13890648_13892127 chrX_13892128_13892800;chrX_13890644_13890647 0.00 NA NA 0.00 NA NA 40.00 50.00 0.00 NA NA 50.00 0.00 100.00 0.00 20.00 NA NA 0.00 0.00 NA 50.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA 25.00 NA 33.33 0.00 K alternative_donor CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4839655;chr3R_4839215_4839561;chr3R_4839215_4839728;chr3R_4839215_4839889;chr3R_4839215_4839799 chr3R_4839215_4839851 chr3R_4839038_4839214;chr3R_4839890_4839901 17.65 33.33 33.33 27.27 20.00 11.11 25.00 9.09 19.05 33.33 25.00 18.18 42.86 0.00 22.22 16.67 0.00 0.00 14.29 40.00 0.00 16.67 12.50 16.67 0.00 14.29 20.00 0.00 25.00 33.33 30.00 0.00 16.67 30.00 0.00 0.00 0.00 0.00 0.00 37.50 0.00 17.65 18.18 20.00 0.00 11.11 40.00 33.33 33.33 33.33 0.00 33.33 0.00 0.00 22.22 25.00 42.86 0.00 K alternative_donor Asph,I_chr2R_12002559_12002858,I_chr2R_12003256_12003315,I_chr2R_12003264_12003322,I_chr2R_12003264_12003325,RI_chr2R_12003268_12003322,RI_chr2R_12003268_12003325 chr2R + chr2R_12003264_12003315 chr2R_12003268_12003315 chr2R_12003316_12003415;chr2R_12003181_12003263 18.75 NA NA NA NA NA NA NA 18.75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA Mical,I_chr3R_5834577_5835458,I_chr3R_5843939_5844218,I_chr3R_5847106_5863537,I_chr3R_5863483_5863537,I_chr3R_5863613_5868513 chr3R - chr3R_5834577_5840711 chr3R_5840549_5840711 chr3R_5840712_5840820 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.76 NA 2.44 0.00 10.00 0.00 0.00 NA NA NA 0.00 NA 3.57 3.23 0.00 0.00 3.85 3.23 NA 2.78 3.03 4.35 NA 0.00 0.00 3.45 3.23 2.63 0.00 0.00 4.65 NA 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 4.17 0.00 NA 0.00 NA NA 0.00 K intron_retention CG6084 chr3L - chr3L_11615276_11616647 chr3L_11615275_11615276;chr3L_11616647_11616648 chr3L_11615133_11615275;chr3L_11616648_11616794 0.00 0.00 1.57 0.83 0.00 0.00 0.00 1.00 1.04 0.00 0.00 0.77 0.00 0.00 2.13 0.00 2.53 0.00 0.00 0.50 1.98 0.00 0.00 1.32 0.00 0.00 1.31 0.00 0.00 0.00 0.76 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 1.26 0.00 0.93 0.00 0.00 0.00 1.15 1.32 2.35 1.20 0.00 1.01 0.00 1.01 1.22 0.83 0.71 0.00 0.45 K alternative_acceptor CG7376 chr3L + chr3L_6167546_6167602 chr3L_6167546_6167597 chr3L_6167350_6167545;chr3L_6167603_6168754 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_243225_243279 chr4_243224_243225;chr4_243279_243280 chr4_243167_243224;chr4_243280_243362 3.28 4.26 0.00 3.88 5.71 4.08 4.05 3.03 3.39 NA 12.90 2.75 4.48 1.85 0.00 2.15 3.92 3.23 1.59 3.77 5.41 0.00 8.33 3.23 13.04 0.00 11.76 7.14 5.26 0.00 5.79 0.00 0.00 3.31 0.00 6.67 0.00 9.09 0.00 0.00 NA 3.28 0.00 5.77 0.00 0.00 8.11 0.00 3.40 0.00 4.44 0.00 6.67 3.85 0.00 0.00 0.00 4.00 K cassette Fur1,I_chr3R_21179590_21179870,CEI_chr3R_21210600_21222433,RI_chr3R_21257704_21264109,I_chr3R_21257704_21287086 chr3R - chr3R_21243687_21298203 chr3R_21243687_21257638;chr3R_21257704_21298203 chr3R_21257639_21257703 chr3R_21243660_21243686;chr3R_21298204_21298210 100.00 92.31 100.00 61.11 100.00 100.00 86.67 100.00 100.00 NA NA 95.24 100.00 100.00 100.00 94.44 93.75 90.91 100.00 100.00 100.00 90.91 92.86 100.00 87.50 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 90.00 100.00 87.50 90.91 100.00 100.00 100.00 91.67 95.45 85.71 NA 87.50 100.00 100.00 71.43 92.31 100.00 NA NA 100.00 100.00 88.89 100.00 K intron_retention kis,RI_chr2L_218886_227371,RI_chr2L_231035_231947,RI_chr2L_242745_242800,I_chr2L_242926_250756 chr2L - chr2L_221801_221868 chr2L_221800_221801;chr2L_221868_221869 chr2L_221764_221800;chr2L_221869_221918 99.18 100.00 100.00 100.00 100.00 100.00 100.00 96.77 98.36 94.74 100.00 100.00 100.00 100.00 93.75 97.44 100.00 100.00 100.00 100.00 100.00 94.83 96.15 90.91 100.00 95.65 93.75 90.48 100.00 95.65 100.00 100.00 98.08 100.00 100.00 94.12 95.65 NA 100.00 97.22 100.00 97.56 93.75 95.83 91.67 100.00 NA 95.52 97.30 100.00 94.44 93.33 NA NA 96.00 92.31 NA 100.00 K jcn_only_AA CG7546 chr3L + chr3L_7508878_7508970;chr3L_7508878_7508925 chr3L_7508878_7508967 chr3L_7508741_7508877;chr3L_7508971_7509150 62.50 56.41 60.81 45.45 59.65 51.52 59.74 53.75 66.67 64.18 67.92 64.66 66.00 63.46 64.47 54.24 75.47 65.08 71.43 60.36 52.38 64.00 69.72 61.49 63.41 74.55 60.74 61.96 68.18 53.01 63.64 58.46 51.61 52.63 65.85 68.04 69.23 58.97 63.33 63.78 67.19 57.81 62.50 68.46 56.10 62.14 64.75 58.93 52.50 58.59 67.22 51.85 61.17 57.02 63.49 64.29 69.29 52.46 K intron_retention CG17574 chr2R - chr2R_8756589_8756654 chr2R_8756588_8756589;chr2R_8756654_8756655 chr2R_8756448_8756588;chr2R_8756655_8757124 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG7945,RI_chr3L_15515681_15516932,RI_chr3L_15516824_15516932 chr3L - chr3L_15515681_15516932 chr3L_15515681_15516067;chr3L_15516565_15516932 chr3L_15516068_15516564 chr3L_15515660_15515680;chr3L_15516933_15517032 98.81 98.06 99.15 97.71 98.75 95.83 99.36 96.32 98.24 100.00 97.53 95.76 89.33 98.98 99.10 99.41 98.81 100.00 99.13 99.54 100.00 96.55 98.47 98.45 94.37 92.59 98.13 98.63 96.92 96.81 99.04 98.99 99.19 96.45 100.00 97.14 99.24 100.00 99.06 97.85 97.37 96.48 98.84 95.87 100.00 99.39 99.00 99.21 97.86 98.37 99.19 96.63 98.81 100.00 98.52 99.15 100.00 99.45 K intron_retention spn-D chr3R + chr3R_22992203_22992357 chr3R_22992202_22992203;chr3R_22992357_22992358 chr3R_22992045_22992202;chr3R_22992358_22992486 0.00 NA NA NA NA NA 0.00 NA NA NA NA 5.88 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG11309,I_chr3L_21297192_21297708 chr3L - chr3L_21297192_21297389;chr3L_21297192_21297542 chr3L_21297192_21297487 chr3L_21297092_21297191;chr3L_21297543_21297554 20.00 NA 16.67 0.00 16.67 16.67 10.00 11.11 12.50 NA NA 30.00 33.33 20.00 20.00 7.69 40.00 20.00 25.00 0.00 25.00 40.00 25.00 16.67 NA 20.00 NA NA 25.00 0.00 11.11 20.00 16.67 11.11 NA 20.00 25.00 NA NA 20.00 33.33 11.11 20.00 NA NA 20.00 NA 0.00 8.33 20.00 NA NA NA NA 16.67 20.00 0.00 20.00 K intron_retention Rpb7,RI_chr3R_11050688_11050804,I_chr3R_11054902_11054955 chr3R - chr3R_11048173_11048229 chr3R_11048172_11048173;chr3R_11048229_11048230 chr3R_11047945_11048172;chr3R_11048230_11048367 0.00 0.00 0.00 2.94 0.00 0.00 7.41 0.93 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 3.92 0.00 0.00 0.00 0.00 1.67 3.77 0.00 24.14 0.00 0.00 0.00 0.00 3.26 0.00 7.41 0.00 0.00 0.00 0.00 12.20 1.02 0.00 0.00 0.00 2.90 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 N alternative_acceptor I_chrX_16309561_16309689,hang,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16323441_16323548;chrX_16323441_16324653 chrX_16323441_16323563 chrX_16323093_16323440;chrX_16324654_16324797 7.79 8.45 3.95 7.62 4.92 5.77 7.27 3.15 8.07 9.62 4.08 7.50 9.23 8.06 7.79 8.82 6.00 7.04 6.49 8.79 2.90 23.36 7.45 9.89 9.46 4.69 7.34 8.45 14.63 10.10 4.48 7.89 12.30 5.63 10.91 12.20 10.45 8.42 8.70 9.65 4.26 7.24 4.84 10.83 13.51 6.00 6.67 14.29 6.20 6.98 7.20 8.33 8.70 10.00 6.17 6.45 6.67 12.90 K jcn_only_AA Pabp2,I_chr2R_4020297_4020426 chr2R + chr2R_4020581_4020645 chr2R_4020581_4020642 chr2R_4020447_4020580;chr2R_4020646_4020713 11.11 11.67 14.29 11.90 15.58 11.11 17.19 17.48 8.75 6.06 20.00 9.04 8.82 11.76 9.26 10.98 17.50 12.31 16.28 10.47 16.67 14.29 18.87 2.33 16.00 14.29 0.00 11.43 14.29 5.56 7.14 12.50 8.06 10.31 10.00 19.05 9.76 10.71 21.05 8.05 25.00 11.92 14.63 9.76 11.76 7.02 5.17 9.38 9.74 13.51 10.53 8.57 9.68 2.00 7.07 2.22 12.31 20.48 K alternative_acceptor CG12582 chr3R + chr3R_23594_23930;chr3R_23594_23980 chr3R_23594_23942 chr3R_23459_23593;chr3R_23981_24494 3.25 2.20 3.32 3.98 3.85 1.71 9.43 1.92 2.58 4.08 2.15 2.91 2.31 1.85 2.13 3.17 2.79 2.84 1.57 2.57 3.26 4.32 2.66 4.00 6.32 3.09 3.30 3.10 10.08 4.55 9.01 3.92 4.93 2.57 3.51 2.82 4.82 3.25 3.62 4.15 4.17 2.11 2.34 4.08 5.00 3.93 2.98 6.48 2.42 4.24 2.62 4.35 2.56 4.02 2.24 3.74 3.20 2.40 K intron_retention Droj2,RI_chr3R_9207981_9208471,RI_chr3R_9208529_9209185 chr3R + chr3R_9207867_9207913 chr3R_9207866_9207867;chr3R_9207913_9207914 chr3R_9207840_9207866;chr3R_9207914_9207980 99.32 98.90 100.00 99.56 99.26 100.00 99.58 99.57 99.54 100.00 99.07 99.52 100.00 99.12 99.25 98.60 99.29 99.12 100.00 98.42 98.08 97.89 98.35 99.18 98.85 100.00 98.84 100.00 99.42 100.00 97.90 99.06 99.44 99.50 100.00 100.00 99.32 98.61 99.10 99.14 100.00 99.28 99.15 99.40 99.52 100.00 99.05 100.00 99.25 99.33 100.00 99.07 98.89 100.00 97.55 98.89 99.44 100.00 K intron_retention CG30456 chr2R + chr2R_12993709_12993770 chr2R_12993708_12993709;chr2R_12993770_12993771 chr2R_12993622_12993708;chr2R_12993771_12993875 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 5.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10638 chr3L - chr3L_12493655_12493730 chr3L_12493654_12493655;chr3L_12493730_12493731 chr3L_12493637_12493654;chr3L_12493731_12493791 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Zasp52,I_chr2R_11661472_11663280,F_chr2R_11662587_11662811,I_chr2R_11690993_11701987 chr2R - chr2R_11661472_11664682 chr2R_11661471_11661472;chr2R_11664682_11664683 chr2R_11661372_11661471;chr2R_11664683_11664791 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 27.91 88.89 NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 77.78 NA 87.50 NA NA NA 90.91 NA NA NA NA NA NA NA NA NA NA K jcn_only_AA Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8089737_8105696;chr2L_8089737_8102299 chr2L_8089737_8105691 chr2L_8089558_8089736 99.73 99.79 99.47 99.73 98.39 100.00 99.82 99.77 99.86 98.12 100.00 99.91 100.00 99.83 99.84 99.83 99.86 99.43 100.00 99.55 99.59 99.81 99.29 99.59 99.71 99.50 99.50 100.00 99.71 99.59 100.00 99.53 100.00 99.69 99.76 99.53 99.21 99.01 99.45 99.56 99.65 100.00 99.66 100.00 99.49 99.77 100.00 99.75 99.84 100.00 99.50 100.00 100.00 99.55 99.54 99.35 99.47 99.75 K jcn_only_AD achi,I_chr2R_8401767_8401934 chr2R - chr2R_8401767_8401848;chr2R_8401767_8401934 chr2R_8401767_8402280 chr2R_8401667_8401766;chr2R_8402281_8402519 90.48 96.00 NA 86.21 86.36 NA 90.48 88.89 81.08 NA NA 86.84 NA NA 76.92 84.09 78.26 NA 90.48 89.80 82.61 NA 89.19 90.62 79.17 91.67 NA NA 90.48 82.61 80.00 100.00 94.12 90.00 NA 100.00 87.88 NA 93.55 96.77 NA 86.84 95.00 NA 100.00 94.59 79.17 96.00 82.76 96.49 85.29 NA NA 100.00 95.45 100.00 95.83 92.31 N alternative_acceptor CG32138 chr3L + chr3L_14058259_14058688;chr3L_14058259_14058715 chr3L_14058259_14059498 chr3L_14058172_14058258;chr3L_14059499_14060368 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.26 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.63 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 2.02 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD wech,I_chr2R_3373673_3377000,I_chr2R_3373673_3377045,I_chr2R_3373673_3377324,I_chr2R_3376705_3376837 chr2R - chr2R_3377076_3377324 chr2R_3377076_3377150 chr2R_3377046_3377075;chr2R_3377325_3377372 90.59 90.91 92.00 NA 86.36 93.94 NA 85.19 87.93 80.00 88.46 90.48 100.00 100.00 95.24 96.55 NA 86.67 90.48 80.77 81.48 NA 88.89 100.00 NA NA NA NA NA 93.75 100.00 NA 78.79 90.00 83.33 NA NA 87.50 95.65 96.83 NA 94.64 90.00 89.74 NA 96.15 96.00 84.71 95.74 NA 96.43 NA 100.00 NA 80.95 NA NA 90.70 K jcn_only_AA RpL29,I_chr2R_17184688_17191389 chr2R + chr2R_17181380_17181558 chr2R_17181380_17181555 chr2R_17181355_17181379;chr2R_17181559_17181664 0.34 0.45 0.34 0.30 0.31 0.40 0.41 0.36 0.34 0.41 0.48 0.29 0.22 0.27 0.27 0.28 0.41 0.25 0.27 0.33 0.40 0.32 0.65 0.64 0.37 0.34 1.32 0.18 0.88 0.35 0.45 0.52 0.25 0.28 0.00 1.11 1.02 0.48 0.61 0.26 0.22 0.20 0.37 0.51 0.14 0.80 0.64 0.00 0.27 0.34 0.70 0.34 0.13 0.88 0.23 0.25 0.59 0.58 K cassette Jupiter,I_chr3R_7418347_7445425,RE_chr3R_7419487_7429863,I_chr3R_7429934_7430307,I_chr3R_7429962_7445425,I_chr3R_7430006_7445425,RI_chr3R_7442793_7445425 chr3R - chr3R_7419489_7445425 chr3R_7419489_7429863;chr3R_7429962_7445425 chr3R_7429864_7429961 chr3R_7419355_7419488;chr3R_7445426_7445525 0.17 0.12 0.18 0.26 0.00 0.18 0.31 0.33 0.07 0.25 0.00 0.20 0.26 0.20 0.00 0.18 0.18 0.00 0.17 0.16 0.17 0.84 0.24 0.19 0.34 0.31 0.12 1.02 0.17 0.11 0.00 0.22 0.00 0.23 0.18 0.16 0.09 0.09 0.24 0.19 0.18 0.14 0.22 0.09 0.10 0.00 0.12 0.00 0.27 0.18 0.10 0.00 0.16 0.17 0.14 0.12 0.27 0.15 K intron_retention nrv2,I_chr2L_6791842_6791904,I_chr2L_6791842_6792033,I_chr2L_6791842_6794492,I_chr2L_6793397_6794492,I_chr2L_6793405_6793916,I_chr2L_6793405_6794499,I_chr2L_6793684_6794492 chr2L - chr2L_6791842_6791904 chr2L_6791841_6791842;chr2L_6791904_6791905 chr2L_6791742_6791841;chr2L_6791905_6791938 88.89 96.00 90.91 90.70 92.31 94.74 83.33 92.86 88.89 81.82 78.57 97.14 92.31 82.35 95.65 88.00 80.00 87.50 95.24 88.57 94.74 92.86 86.21 80.65 94.44 94.74 90.24 88.89 100.00 68.42 90.91 89.47 87.10 86.67 93.75 95.24 81.25 82.61 96.55 83.78 83.33 88.89 72.22 90.00 83.33 93.75 100.00 86.49 87.18 95.65 80.77 90.00 86.67 66.67 86.67 83.33 87.50 75.86 K intron_retention CG17646,RI_chr2L_1747861_1749517,E_chr2L_1749256_1749517 chr2L + chr2L_1747861_1748773 chr2L_1747860_1747861;chr2L_1748773_1748774 chr2L_1747853_1747860;chr2L_1748774_1748874 10.51 NA NA NA NA NA NA NA 17.65 NA NA 13.33 NA NA NA NA NA NA NA 21.43 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.25 26.32 NA 25.00 NA 6.67 NA NA 7.69 NA 16.00 0.00 0.00 NA NA NA NA NA NA NA K alternative_donor CaMKI,I_chr4_466377_467726,I_chr4_467862_471815,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_466592_467726;chr4_466275_467726;chr4_466377_467726;chr4_466798_467726;chr4_467273_467726 chr4_467662_467726 chr4_467727_467826;chr4_466269_466274 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 K intron_retention CG42542,I_chr3R_11022467_11024586,I_chr3R_11022501_11024586,RI_chr3R_11023231_11024586,I_chr3R_11024452_11024586 chr3R + chr3R_11022360_11024586 chr3R_11022359_11022360;chr3R_11024586_11024587 chr3R_11022352_11022359;chr3R_11024587_11024686 20.00 NA NA 0.00 21.43 NA NA 20.00 33.33 NA 15.38 25.00 NA 14.29 NA 31.25 30.77 NA 16.67 9.52 NA NA NA NA NA 26.32 NA NA NA NA 13.33 NA NA 16.67 NA NA NA NA NA NA NA 22.73 NA NA NA NA NA NA 20.83 NA NA NA NA NA 17.65 NA NA NA N jcn_only_AD bchs,I_chr2L_5907926_5908312 chr2L + chr2L_5907288_5908312;chr2L_5907644_5908312 chr2L_5907926_5908312 chr2L_5908313_5908412;chr2L_5907175_5907287 6.25 2.27 4.92 2.47 6.67 3.39 5.33 6.06 14.69 3.33 9.52 9.09 8.33 1.89 10.99 9.43 16.67 19.15 2.13 8.00 8.33 3.95 8.65 5.88 6.45 4.00 6.90 3.23 3.17 6.82 5.19 10.26 2.52 6.06 3.51 0.00 11.59 4.00 11.11 9.52 2.33 8.33 6.25 4.62 8.20 2.63 6.78 1.90 11.70 14.29 8.86 5.56 11.11 6.25 5.36 10.71 9.52 4.23 K alternative_acceptor dre4,I_chr3L_1875215_1875286,I_chr3L_1875590_1875651,F_chr3L_1877432_1877517 chr3L - chr3L_1875215_1875286 chr3L_1875219_1875286 chr3L_1875287_1875386;chr3L_1875115_1875214 100.00 98.51 100.00 99.24 100.00 100.00 100.00 99.38 100.00 100.00 98.00 100.00 100.00 98.73 100.00 99.29 100.00 100.00 100.00 100.00 100.00 100.00 99.15 98.96 100.00 98.97 99.11 100.00 98.81 98.48 99.00 98.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.36 100.00 100.00 100.00 100.00 98.39 100.00 99.39 100.00 100.00 100.00 100.00 100.00 100.00 98.61 98.68 100.00 K intron_retention CG14408,RI_chrX_14722065_14722693 chrX - chrX_14722065_14723168 chrX_14722064_14722065;chrX_14723168_14723169 chrX_14721965_14722064;chrX_14723169_14724380 11.76 NA NA 41.18 NA NA NA NA 11.76 NA NA 7.69 NA NA 7.69 NA NA NA NA 22.22 NA 13.04 5.88 12.50 NA NA NA NA NA 6.67 NA NA 7.41 9.09 NA 33.33 10.00 NA NA 12.50 NA 4.00 NA NA 17.65 NA NA NA 0.00 NA 14.29 NA NA NA NA 12.50 14.29 0.00 K cassette Rab7 chr3R + chr3R_19818863_19819667 chr3R_19818863_19818929;chr3R_19819052_19819667 chr3R_19818930_19819051 chr3R_19818796_19818862;chr3R_19819668_19819903 1.02 1.38 0.62 1.02 2.22 0.70 1.30 0.59 1.20 0.82 0.81 1.12 0.61 1.33 1.76 1.54 0.70 0.70 1.55 1.31 1.30 0.39 1.72 0.96 1.23 0.64 1.80 1.89 1.57 0.90 1.02 0.52 0.24 0.73 0.65 1.18 1.82 1.20 1.09 1.02 0.47 1.66 0.79 1.95 0.90 0.71 0.46 0.63 0.99 1.96 2.92 1.85 0.81 0.79 0.93 2.40 0.99 0.24 K intron_retention RpS15Aa,I_chrX_13230413_13230955,I_chrX_13230413_13230960 chrX - chrX_13230413_13231128 chrX_13230412_13230413;chrX_13231128_13231129 chrX_13230313_13230412;chrX_13231129_13231197 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA 91.67 NA NA 100.00 91.67 NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA 100.00 100.00 K intron_retention DNApol-iota chr3R + chr3R_4060945_4061008 chr3R_4060944_4060945;chr3R_4061008_4061009 chr3R_4059973_4060944;chr3R_4061009_4062528 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_last_exon CG12576,RI_chrX_21878289_21882347,I_chrX_21882735_21883714 chrX - chrX_21880638_21882347;chrX_21878289_21882347 chrX_21879320_21882347 chrX_21873185_21878288 chrX_21879015_21879319 chrX_21882348_21882447 84.91 85.63 88.59 96.57 88.98 91.34 75.94 84.04 84.80 87.00 84.87 85.00 82.41 78.51 85.42 79.03 84.55 88.32 91.18 89.19 88.50 85.91 86.12 85.71 88.12 84.91 82.63 89.62 77.39 88.15 85.59 94.12 76.47 86.01 83.19 80.56 93.97 90.45 87.12 83.00 74.58 82.44 84.54 84.16 80.77 77.04 83.33 79.67 88.74 82.58 87.34 83.70 82.71 87.18 84.29 77.34 87.42 83.81 N intron_retention CG13602,I_chr3R_19753657_19753715 chr3R - chr3R_19754473_19754558 chr3R_19754472_19754473;chr3R_19754558_19754559 chr3R_19754464_19754472;chr3R_19754559_19754569 88.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 76.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention TBPH,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19747351_19747409 chr2R_19747350_19747351;chr2R_19747409_19747410 chr2R_19747213_19747350;chr2R_19747410_19747865 1.12 0.00 3.77 4.55 6.45 5.41 4.26 6.82 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 2.44 6.90 0.00 3.33 2.27 2.22 6.67 10.00 0.00 0.00 0.00 0.00 4.35 0.00 5.26 2.86 0.00 2.70 2.04 0.00 1.12 3.45 0.00 2.22 0.00 0.00 5.41 4.11 6.15 2.00 0.00 0.00 1.72 0.00 0.00 1.23 0.00 K alternative_acceptor X11L,RE_chrX_17497873_17498103 chrX + chrX_17495953_17496017 chrX_17495953_17496014 chrX_17495413_17495952;chrX_17496018_17496128 34.21 36.36 35.14 29.17 40.74 33.33 27.45 38.78 27.27 20.59 27.27 30.30 42.31 33.33 30.30 34.21 27.59 38.46 24.24 35.44 35.29 33.33 36.67 34.21 41.67 35.71 38.24 43.75 25.93 40.74 30.23 47.37 29.63 31.58 33.33 31.03 25.00 40.74 40.54 45.00 41.67 40.74 32.00 28.57 34.48 29.17 31.03 39.02 35.71 31.25 38.46 28.57 40.00 33.33 36.84 40.74 36.36 25.00 K alternative_acceptor CG7692 chr3L + chr3L_17346838_17346895 chr3L_17346838_17346892 chr3L_17346411_17346837;chr3L_17346896_17347143 87.50 NA NA NA NA NA 87.50 NA 83.33 NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG2004,I_chrX_8608130_8608508,RI_chrX_8608147_8608508,I_chrX_8608169_8608438 chrX - chrX_8608169_8608508;chrX_8608130_8608508;chrX_8608147_8608508 chrX_8608150_8608508 chrX_8608509_8608538;chrX_8608069_8608129 1.89 0.00 2.86 0.00 3.70 1.96 11.39 1.10 1.52 4.17 0.00 3.91 0.00 6.15 7.35 3.48 2.27 1.64 2.74 1.75 3.17 3.28 4.94 2.25 0.00 1.32 2.02 3.66 1.89 7.84 1.28 2.63 1.56 3.03 1.30 0.00 0.00 4.00 0.00 0.94 0.00 1.61 3.57 0.00 1.47 0.00 1.47 1.85 0.83 0.00 3.30 4.55 1.96 1.89 4.40 1.52 2.25 1.52 K intron_retention cdc2c,RI_chr3R_16562395_16562445 chr3R + chr3R_16562907_16562981 chr3R_16562906_16562907;chr3R_16562981_16562982 chr3R_16562707_16562906;chr3R_16562982_16563379 39.56 75.00 45.45 70.59 43.75 NA 31.25 62.50 45.16 NA 14.29 36.00 NA NA 63.64 NA NA NA 63.64 29.03 50.00 NA 26.67 29.41 25.00 NA 50.00 NA NA NA NA 40.00 27.27 55.56 NA 30.77 27.50 NA 18.92 36.36 NA 33.33 41.67 NA 21.43 44.44 39.13 41.67 44.44 37.04 46.15 26.67 33.33 44.44 35.71 40.00 30.43 47.06 K alternative_acceptor Surf4,I_chr3R_11171570_11171630,I_chr3R_11171728_11171801 chr3R - chr3R_11170875_11171630 chr3R_11171570_11171630 chr3R_11171631_11171727;chr3R_11170775_11170874 0.68 0.56 0.72 0.47 0.81 0.00 0.61 0.49 0.40 0.84 1.14 0.89 1.23 0.84 0.73 0.63 1.00 0.85 0.00 0.58 0.00 2.80 0.40 0.48 0.77 1.00 0.93 1.75 1.14 0.64 0.82 0.00 0.68 0.53 0.93 0.85 0.32 0.51 0.68 1.32 1.15 0.81 1.05 0.50 0.67 0.53 0.69 0.61 0.43 0.73 0.96 0.89 0.00 0.81 0.00 0.61 0.61 0.53 K mutually_exclusive I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499338_1499771,chr3L_1499880_1501798;chr3L_1499338_1501345,chr3L_1501398_1501798 chr3L_1499338_1500244,chr3L_1500389_1501798 chr3L_1499772_1499879;chr3L_1501346_1501397 chr3L_1500245_1500388 chr3L_1499043_1499337;chr3L_1501799_1501892 70.00 NA 60.00 70.00 NA NA NA 81.82 75.00 83.33 40.00 76.92 NA NA 66.67 72.73 NA NA 85.71 58.33 NA 100.00 55.56 80.00 57.14 71.43 85.71 58.33 NA 40.00 81.82 NA 40.00 88.89 66.67 100.00 NA NA 40.00 44.44 66.67 75.00 NA 75.00 100.00 66.67 NA 44.44 63.64 57.14 44.44 80.00 NA 80.00 62.50 50.00 75.00 80.00 K intron_retention gammaCop,rod chr3R + chr3R_27400709_27400766 chr3R_27400708_27400709;chr3R_27400766_27400767 chr3R_27400523_27400708;chr3R_27400767_27400919 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.91 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Syx16,RI_chrX_20264515_20264584 chrX - chrX_20264515_20264588 chrX_20264514_20264515;chrX_20264588_20264589 chrX_20264415_20264514;chrX_20264589_20264684 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 2.99 0.00 0.00 0.00 0.00 0.00 0.00 13.51 0.00 3.23 0.00 0.00 0.00 2.13 1.14 5.13 0.00 0.00 4.11 13.64 0.00 0.00 0.00 0.00 4.65 0.00 0.00 6.25 2.70 0.00 1.77 2.53 0.00 0.00 8.00 0.00 4.62 0.00 2.60 0.00 0.00 5.26 0.00 0.00 0.00 0.00 2.13 5.56 2.67 4.44 K intron_retention CG16941 chr3R - chr3R_12827529_12827585 chr3R_12827528_12827529;chr3R_12827585_12827586 chr3R_12827357_12827528;chr3R_12827586_12827750 1.47 1.45 0.00 6.17 1.92 0.00 0.00 5.33 5.00 0.00 5.00 2.04 0.00 7.27 5.26 8.89 0.00 0.00 0.00 3.42 0.00 0.00 4.08 0.00 0.00 0.00 5.19 0.00 2.67 0.00 6.52 3.39 2.56 3.03 0.00 0.00 0.00 0.00 0.94 3.03 0.00 1.89 0.00 3.45 1.54 4.60 2.94 4.31 3.75 1.47 2.11 0.00 0.00 0.00 1.92 0.00 0.00 2.13 K alternative_donor CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3018082_3018278 chr2L_3018082_3018163 chr2L_3018075_3018081;chr2L_3018279_3018287 95.64 100.00 85.71 94.44 NA 77.78 95.45 100.00 100.00 NA 100.00 95.24 100.00 91.67 83.33 95.83 100.00 NA 91.67 100.00 83.33 90.91 85.71 88.89 NA 100.00 100.00 NA 100.00 83.33 82.61 100.00 100.00 95.00 NA NA 100.00 NA NA 94.74 100.00 93.33 87.50 94.44 100.00 100.00 NA 95.24 95.83 87.50 83.33 100.00 NA NA 100.00 100.00 NA 100.00 K intron_retention I_chr3R_23749027_23749091,CG5508,E_chr3R_23755071_23758533 chr3R + chr3R_23758122_23758183 chr3R_23758121_23758122;chr3R_23758183_23758184 chr3R_23757812_23758121;chr3R_23758184_23758590 1.59 3.57 0.00 0.00 0.00 0.00 0.00 2.82 3.85 0.00 0.00 3.33 2.94 2.70 0.00 5.26 0.00 6.82 0.00 4.21 0.00 1.27 3.17 0.00 7.41 9.30 7.27 11.90 3.12 2.22 0.00 3.03 0.00 4.48 7.41 0.00 2.02 4.88 2.67 1.12 2.13 7.37 0.00 0.00 0.00 0.00 2.78 0.00 5.63 0.00 1.56 0.00 0.00 4.65 1.92 1.59 1.59 0.00 K alternative_acceptor CG1308,CG1295 chr3L + chr3L_4195388_4195595 chr3L_4195388_4195589 chr3L_4195360_4195387;chr3L_4195596_4195715 90.91 NA NA 100.00 NA NA 100.00 92.31 83.33 NA NA 90.91 NA NA NA 88.89 88.89 NA NA 100.00 NA 90.00 88.89 NA NA NA NA NA NA NA 87.50 NA 100.00 NA NA NA NA NA NA 91.67 NA 90.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG32062,I_chr3L_10573430_10580726,F_chr3L_10582617_10583219 chr3L + chr3L_10582617_10583426 chr3L_10582617_10583219 chr3L_10582565_10582616;chr3L_10583427_10583490 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 0.00 0.00 NA NA NA NA NA NA NA 0.00 NA 3.70 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA K alternative_donor Trf4-1,I_chrX_8455293_8457185,RI_chrX_8455791_8457185,R_chrX_8455801_8457185,I_chrX_8455902_8457185,I_chrX_8459198_8459266 chrX + chrX_8455100_8457185;chrX_8454847_8457185 chrX_8454992_8457185 chrX_8457186_8457285;chrX_8454674_8454846 0.00 0.00 0.00 0.00 0.00 0.00 3.03 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 9.52 0.00 0.00 0.00 0.00 4.35 3.12 0.00 5.56 3.12 0.00 0.00 0.00 0.00 15.38 0.00 2.38 0.00 0.00 0.00 0.00 4.17 5.26 23.08 1.92 0.00 0.00 22.22 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 9.09 0.00 0.00 25.00 0.00 K jcn_only_AA sxc,I_chr2R_1203985_1205289,I_chr2R_1208121_1213310,I_chr2R_1213177_1213308 chr2R + chr2R_1194858_1194977 chr2R_1194858_1194918 chr2R_1194848_1194857;chr2R_1194978_1195157 96.30 NA NA 100.00 NA NA 100.00 91.30 93.33 NA NA NA 96.88 NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.30 NA NA NA NA NA NA NA NA NA K intron_retention Mvl,E_chr3R_16880765_16881066 chr3R - chr3R_16878968_16881066 chr3R_16878967_16878968;chr3R_16881066_16881067 chr3R_16878926_16878967;chr3R_16881067_16881137 33.33 NA NA 33.33 NA NA NA 21.43 50.00 NA NA NA NA NA NA 44.44 NA NA NA 20.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_acceptor CG8080,REI_chr2R_4979159_4979234,I_chr2R_4979276_4979936,CG13741 chr2R - chr2R_4979377_4979936;chr2R_4979276_4979936 chr2R_4979159_4979936 chr2R_4979937_4980036;chr2R_4979059_4979158 87.17 91.30 86.67 100.00 87.50 100.00 50.00 90.48 89.36 92.31 63.64 86.67 68.42 83.33 91.30 91.67 94.12 81.25 95.00 88.24 70.00 44.44 83.33 96.55 85.71 75.00 82.35 NA NA 80.00 85.00 NA 95.24 93.10 85.71 NA 92.86 85.71 93.33 90.32 72.73 86.84 85.00 88.89 NA 93.10 86.67 82.35 93.18 94.44 86.21 95.00 100.00 80.00 84.38 85.00 92.59 100.00 N alternative_donor e(r) chrX - chrX_8799622_8799801;chrX_8799622_8800141 chrX_8799622_8799982 chrX_8799538_8799621;chrX_8800142_8800333 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG31038,I_chr3R_25702915_25703648,I_chr3R_25705533_25722419,I_chr3R_25727788_25727905 chr3R + chr3R_25702915_25703648;chr3R_25702895_25703648;chr3R_25702897_25703648;chr3R_25702901_25703648;chr3R_25702838_25703648;chr3R_25702970_25703648 chr3R_25702989_25703648 chr3R_25703649_25703748;chr3R_25702831_25702837 9.52 NA NA NA NA NA NA NA 19.05 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.09 NA NA NA NA 9.52 NA NA NA NA NA NA NA NA NA K intron_retention Lip4 chr2L + chr2L_10530676_10530855 chr2L_10530675_10530676;chr2L_10530855_10530856 chr2L_10530670_10530675;chr2L_10530856_10531517 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Hairless chr3R + chr3R_16447945_16448305;chr3R_16448221_16448305 chr3R_16447850_16448305 chr3R_16448306_16449020;chr3R_16447843_16447849 13.04 22.22 14.29 12.12 20.00 7.14 13.04 12.90 19.15 19.05 23.53 7.14 23.81 13.33 4.76 8.00 25.00 10.00 4.76 12.50 21.05 21.74 23.33 18.18 7.14 21.05 8.00 22.22 9.09 10.53 5.26 0.00 9.52 22.86 17.65 10.00 17.39 15.38 20.00 7.14 0.00 19.44 0.00 29.63 11.11 25.00 35.29 9.52 3.23 0.00 17.39 5.88 23.08 12.50 17.86 18.18 10.00 10.00 K jcn_only_AD mri,RI_chr3L_201061_201173,I_chr3L_212783_212843 chr3L + chr3L_201759_201816 chr3L_201763_201816 chr3L_201817_202165;chr3L_201441_201758 1.19 2.59 0.00 2.70 1.52 1.25 1.08 1.85 1.14 4.17 3.80 1.90 0.00 3.61 0.00 0.00 2.94 0.00 1.22 1.52 0.00 2.13 1.42 1.50 0.00 0.00 2.72 0.00 0.00 1.19 5.06 1.00 0.00 0.88 0.00 0.00 2.11 1.01 0.61 1.97 1.96 0.00 1.43 0.84 1.35 0.00 1.24 0.00 1.35 1.14 0.76 3.23 0.83 0.70 0.00 1.23 1.46 2.04 K multi_cassette Tif-IA,RI_chr2L_22250854_22257652 chr2L + chr2L_22250854_22257652 chr2L_22250854_22253193;chr2L_22253333_22253421;chr2L_22253686_22253745;chr2L_22253922_22257652 chr2L_22253194_22253332;chr2L_22253422_22253685;chr2L_22253746_22253921 chr2L_22250754_22250853;chr2L_22257653_22257752 93.75 90.91 89.80 58.88 97.37 90.70 92.86 98.92 91.87 100.00 100.00 93.75 82.00 93.02 92.31 92.05 92.73 83.72 91.55 98.84 100.00 96.88 97.96 91.67 82.76 63.64 96.23 100.00 57.14 94.87 93.22 97.30 90.24 96.00 97.06 94.74 97.06 93.75 96.88 94.12 90.24 96.84 88.46 85.48 97.22 96.72 100.00 90.57 93.00 97.56 97.83 92.68 96.30 96.43 95.45 100.00 92.59 92.31 K jcn_only_AD sec24,I_chr2R_5768722_5769689 chr2R - chr2R_5768722_5769689;chr2R_5768722_5769687 chr2R_5768722_5769384 chr2R_5768622_5768721;chr2R_5769690_5769789 0.00 0.00 0.00 0.64 0.00 0.00 1.46 0.74 0.00 0.00 1.92 0.00 0.00 0.99 0.00 0.77 0.00 0.00 0.00 0.00 3.12 0.75 0.00 0.76 0.00 0.00 0.71 0.00 2.99 0.00 0.00 0.00 0.00 0.00 0.96 0.96 1.79 0.00 0.67 0.00 0.00 0.64 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 1.69 0.00 0.00 K intron_retention CG3309 chrX - chrX_5222143_5222201 chrX_5222142_5222143;chrX_5222201_5222202 chrX_5220670_5222142;chrX_5222202_5223396 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 14.29 NA NA NA NA 5.88 NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention I_chr3R_1303481_1304607,CG31550 chr3R + chr3R_1312607_1312772 chr3R_1312606_1312607;chr3R_1312772_1312773 chr3R_1312598_1312606;chr3R_1312773_1312781 7.69 0.00 0.00 0.00 5.26 14.29 4.35 15.62 13.79 NA NA 9.52 NA NA 12.50 8.70 12.50 0.00 12.50 11.11 NA NA 0.00 0.00 NA 7.69 13.33 NA NA NA 0.00 7.69 9.09 22.73 NA NA 0.00 NA 0.00 8.33 NA 13.79 NA 11.11 0.00 5.26 0.00 12.50 9.09 4.76 0.00 NA NA NA 0.00 0.00 0.00 12.50 N jcn_only_AA Adgf-A,Msi,F_chr3L_17749926_17757161 chr3L - chr3L_17749920_17757161;chr3L_17747522_17757161;chr3L_17747526_17757161 chr3L_17756677_17757161 chr3L_17757162_17757241 0.00 0.00 0.00 3.48 0.00 0.00 1.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 1.10 0.00 0.00 3.49 0.00 0.00 0.00 8.13 6.33 2.59 2.54 2.25 2.26 3.88 2.52 3.56 0.00 0.00 0.00 0.00 0.00 1.62 0.00 0.00 0.00 2.17 1.27 0.00 1.06 1.47 0.00 2.94 0.00 2.53 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG32016,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_978750_978816;chr4_978750_978914;chr4_978750_978939 chr4_978750_978910 chr4_978632_978749;chr4_978940_978943 14.29 NA NA NA NA NA 14.29 9.09 10.00 NA NA 16.67 NA 20.00 NA 21.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA NA NA K cassette sd,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15714587_15717219 chrX_15714587_15715041;chrX_15715807_15717219 chrX_15715042_15715806 chrX_15714456_15714586;chrX_15717220_15717260 19.40 19.64 25.64 32.00 12.50 6.25 17.74 14.63 26.80 25.00 13.33 29.09 9.68 12.50 16.28 13.21 12.50 10.26 20.83 16.90 13.33 56.52 18.89 18.75 23.53 14.29 10.71 26.56 27.45 20.34 15.91 18.52 39.22 19.40 9.80 25.00 37.21 19.70 20.45 18.18 20.00 25.32 9.76 20.37 46.15 22.45 20.00 33.33 18.18 19.05 10.75 10.42 30.77 13.04 16.67 20.00 27.78 39.47 K jcn_only_AD R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8088371_8089184;chr2L_8088454_8089184 chr2L_8088517_8089184 chr2L_8089185_8089284;chr2L_8088362_8088370 11.11 NA 11.11 16.67 NA NA 20.41 14.29 13.73 NA NA 7.02 20.00 9.38 7.69 17.76 NA 19.05 13.95 4.82 18.18 NA 14.81 NA 9.09 23.33 NA NA NA NA 11.43 NA 4.55 16.44 0.00 6.52 NA NA NA 3.03 17.39 11.67 6.67 9.09 NA 3.85 NA NA 8.51 NA 7.69 NA 10.00 NA 3.57 13.04 NA NA K alternative_acceptor CG17883,I_chr2R_560547_560618 chr2R + chr2R_560729_560784 chr2R_560729_560781 chr2R_560619_560728;chr2R_560785_561111 100.00 NA 100.00 NA NA NA 92.00 95.00 95.00 NA 87.50 100.00 93.33 100.00 NA 94.12 90.00 NA 92.31 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 90.00 NA NA 100.00 NA NA 95.65 NA NA NA NA NA 100.00 NA 100.00 100.00 K intron_retention capu,I_chr2L_3884519_3902594,I_chr2L_3887800_3888648,I_chr2L_3887896_3888648 chr2L - chr2L_3887800_3893261 chr2L_3887799_3887800;chr2L_3893261_3893262 chr2L_3887796_3887799;chr2L_3893262_3893604 10.53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention shi,RI_chrX_15786633_15786860,RE_chrX_15793108_15795563 chrX + chrX_15786285_15786860 chrX_15786284_15786285;chrX_15786860_15786861 chrX_15786276_15786284;chrX_15786861_15786960 60.71 NA 63.64 66.67 58.82 57.14 78.57 74.42 54.90 NA 53.33 70.97 59.09 70.59 69.57 75.86 60.71 75.00 51.52 56.82 40.91 68.75 NA NA NA 76.47 NA NA 71.43 45.45 82.76 60.00 57.14 68.89 NA NA NA NA NA 55.56 60.00 64.58 72.00 43.75 50.00 56.25 NA 48.48 75.00 NA NA NA NA NA 64.00 NA NA 40.74 K alternative_donor Cdc42,I_chrX_19591186_19591967,I_chrX_19591567_19591967,I_chrX_19591671_19591967 chrX + chrX_19591186_19591967;chrX_19591259_19591967 chrX_19591567_19591967 chrX_19591968_19592067;chrX_19591086_19591185 0.37 0.66 0.24 0.36 0.28 0.30 0.37 0.34 0.43 0.56 0.28 0.34 0.29 0.30 0.24 0.52 0.29 0.28 0.25 0.26 0.00 1.34 0.24 0.59 0.53 0.25 0.65 0.81 1.26 0.40 0.45 0.65 0.74 0.37 0.54 1.51 0.21 0.37 0.32 0.27 0.61 0.28 0.33 0.30 0.47 0.80 0.00 1.28 0.59 0.40 0.34 0.00 0.51 0.69 0.42 0.38 0.00 0.75 K jcn_only_AD tlk chrX + chrX_3674212_3675687 chrX_3674723_3675687 chrX_3675688_3677592;chrX_3674198_3674211 100.00 NA NA 100.00 NA NA NA NA 96.43 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA K jcn_only_AD Vps4,I_chrX_17802079_17802606 chrX + chrX_17801885_17802606 chrX_17802079_17802606 chrX_17802607_17802706;chrX_17801716_17801884 0.91 0.75 0.40 0.38 0.75 0.49 0.35 0.91 0.81 0.83 0.00 1.33 0.00 2.22 2.28 0.70 0.62 0.00 1.09 0.59 0.00 2.18 1.54 1.23 0.93 0.97 0.77 1.03 2.17 2.33 7.04 1.65 1.44 0.93 0.49 0.41 0.99 2.02 1.61 2.03 0.00 0.78 2.03 6.56 2.22 0.75 1.23 0.90 0.50 4.94 2.63 0.61 1.59 0.35 0.00 1.20 0.86 0.43 K cassette p120ctn,I_chr2R_482968_494268,I_chr2R_487593_493262 chr2R + chr2R_487593_495863 chr2R_487593_494268;chr2R_494826_495863 chr2R_494269_494825 chr2R_487493_487592;chr2R_495864_496579 100.00 100.00 100.00 97.79 100.00 100.00 100.00 99.32 100.00 100.00 100.00 100.00 98.33 100.00 100.00 99.32 100.00 100.00 100.00 100.00 100.00 100.00 98.55 100.00 100.00 100.00 100.00 97.44 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 98.31 100.00 100.00 100.00 100.00 100.00 99.34 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 K alternative_donor CG1814,Updo chr2R + chr2R_5467293_5467467 chr2R_5467342_5467467 chr2R_5467468_5467871;chr2R_5467024_5467292 57.58 50.00 60.00 85.71 63.64 62.50 68.75 94.44 66.67 45.45 85.71 44.44 70.00 66.67 76.19 86.67 75.00 68.75 66.67 54.05 50.00 60.87 38.71 57.69 41.67 66.67 52.38 64.29 77.27 57.14 38.10 58.82 52.94 65.00 61.11 44.44 46.67 37.04 43.33 48.48 52.63 58.06 75.00 52.00 47.06 45.45 61.90 39.13 53.33 53.85 57.58 40.00 47.62 36.36 72.22 31.82 62.50 53.33 K alternative_donor RpS9,E_chr3L_9503090_9504155,E_chr3L_9503259_9504163,I_chr3L_9504402_9504516 chr3L - chr3L_9503259_9503564 chr3L_9503259_9503381 chr3L_9503159_9503258;chr3L_9503565_9503751 1.15 1.07 0.60 0.86 0.64 0.62 0.93 0.79 0.66 1.38 0.71 0.74 0.83 0.72 0.52 0.69 0.66 0.70 0.65 0.66 0.65 2.86 2.01 1.79 1.94 0.68 2.37 4.33 1.19 1.69 5.03 1.45 1.12 0.70 2.04 1.73 1.41 1.57 1.70 1.39 1.11 0.75 0.69 1.95 1.18 1.46 1.58 1.15 1.51 1.77 3.01 1.94 0.82 1.85 0.77 1.96 2.27 0.41 K cassette Kap-alpha3,RE_chr3R_5403032_5403325,I_chr3R_5403032_5403329,E_chr3R_5403032_5403405 chr3R - chr3R_5403032_5403329 chr3R_5403032_5403083;chr3R_5403089_5403329 chr3R_5403084_5403088 chr3R_5402932_5403031;chr3R_5403330_5403367 100.00 100.00 100.00 100.00 100.00 100.00 97.10 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 96.15 100.00 100.00 100.00 98.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD nes chr3L - chr3L_19253331_19253632;chr3L_19253331_19253636;chr3L_19253331_19253609;chr3L_19253331_19253648;chr3L_19253331_19253745;chr3L_19253331_19253764 chr3L_19253331_19253676 chr3L_19253215_19253330;chr3L_19253765_19253779 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor fl(2)d,I_chr2R_9709063_9711788 chr2R - chr2R_9709631_9711975 chr2R_9709631_9711296 chr2R_9709566_9709630;chr2R_9711976_9711987 98.88 100.00 100.00 97.65 98.00 96.36 98.80 95.35 98.68 100.00 98.08 98.55 100.00 98.21 100.00 95.24 98.15 98.18 100.00 100.00 97.96 99.25 97.32 98.88 98.59 98.15 98.78 98.84 100.00 100.00 92.94 98.97 99.54 99.03 98.86 98.97 100.00 100.00 100.00 99.44 100.00 99.27 97.96 97.67 100.00 99.15 100.00 99.57 99.17 100.00 99.04 98.33 100.00 98.48 98.72 98.63 98.36 98.10 K cassette I_chr3R_19825840_19825904,Miro chr3R - chr3R_19860752_19861335 chr3R_19860752_19861009;chr3R_19861049_19861335 chr3R_19861010_19861048 chr3R_19860087_19860751;chr3R_19861336_19862540 100.00 100.00 91.67 100.00 100.00 100.00 100.00 94.12 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 95.65 100.00 81.25 100.00 100.00 100.00 100.00 100.00 100.00 93.75 93.33 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 96.00 K intron_retention AnnIX,I_chr3R_16895383_16895999 chr3R + chr3R_16893222_16893790 chr3R_16893221_16893222;chr3R_16893790_16893791 chr3R_16893168_16893221;chr3R_16893791_16894499 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.60 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.48 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette par-1,I_chr2R_15359242_15360944,I_chr2R_15359251_15359544,I_chr2R_15359251_15360944,I_chr2R_15359658_15359771,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15359251_15360944 chr2R_15359251_15360323;chr2R_15360437_15360500;chr2R_15360685_15360944 chr2R_15360324_15360436;chr2R_15360501_15360684 chr2R_15359244_15359250;chr2R_15360945_15360953 100.00 98.15 100.00 95.31 100.00 100.00 100.00 98.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 97.56 98.90 100.00 100.00 100.00 98.63 97.50 100.00 98.15 100.00 100.00 98.36 100.00 100.00 100.00 100.00 98.55 98.90 98.68 96.77 98.78 97.06 100.00 97.14 100.00 100.00 100.00 100.00 100.00 98.78 97.44 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Gp93,E_chr3R_23774640_23777523 chr3R + chr3R_23774624_23774705 chr3R_23774623_23774624;chr3R_23774705_23774706 chr3R_23774540_23774623;chr3R_23774706_23774795 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.40 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Sas-4,I_chr3R_2978972_2979025 chr3R + chr3R_2978972_2979025 chr3R_2978975_2979025 chr3R_2979026_2979125;chr3R_2978872_2978971 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 89.66 NA NA NA 100.00 NA NA 100.00 97.78 100.00 NA 95.65 NA NA NA NA 100.00 100.00 100.00 90.00 100.00 97.37 100.00 100.00 93.62 NA 96.77 NA 100.00 93.55 95.45 96.30 95.83 97.14 96.55 95.45 NA 96.67 100.00 95.45 100.00 96.97 95.83 K intron_retention CG5746 chr3R - chr3R_20174283_20174383 chr3R_20174282_20174283;chr3R_20174383_20174384 chr3R_20173869_20174282;chr3R_20174384_20174495 98.48 95.45 100.00 100.00 98.11 98.33 100.00 99.00 98.18 97.62 100.00 99.03 98.48 100.00 96.88 97.94 100.00 93.94 98.44 98.64 97.92 95.95 100.00 100.00 97.67 98.53 100.00 98.04 98.31 97.26 98.36 100.00 97.89 97.89 97.30 98.51 98.55 98.15 98.81 99.17 93.62 99.15 97.87 98.51 92.73 98.44 100.00 97.96 99.14 95.45 97.62 100.00 100.00 100.00 100.00 100.00 100.00 95.00 K mutually_exclusive Actn,I_chrX_1922061_1924247,I_chrX_1922784_1923807,I_chrX_1922784_1923873 chrX - chrX_1922061_1923873,chrX_1923960_1924247 chrX_1922061_1922697,chrX_1922784_1924247 chrX_1923874_1923959 chrX_1922698_1922783 chrX_1921968_1922060;chrX_1924248_1924347 93.75 93.94 93.55 88.89 95.24 95.45 53.85 92.11 92.00 95.24 90.00 97.44 93.33 94.44 96.55 87.50 95.00 93.75 100.00 91.80 93.33 86.54 93.62 97.37 96.00 90.62 96.77 90.91 90.91 95.00 95.83 93.33 92.59 93.55 100.00 95.83 91.84 94.74 87.80 97.62 88.24 93.33 93.75 97.50 91.67 94.74 92.68 92.86 97.50 94.87 98.04 96.15 95.83 95.45 90.91 96.77 93.55 96.30 K intron_retention CG5525,E_chr2L_12690983_12691912,CG5780 chr2L - chr2L_12691503_12691564 chr2L_12691502_12691503;chr2L_12691564_12691565 chr2L_12691363_12691502;chr2L_12691565_12692217 0.00 1.00 0.44 0.16 0.53 0.56 0.47 0.31 0.62 0.00 0.27 0.13 0.00 0.62 0.44 0.73 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.63 0.36 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.38 0.56 0.32 0.53 0.00 0.00 0.40 0.26 0.56 0.00 0.00 0.00 0.65 0.42 0.00 0.00 0.00 K intron_retention CG10289,I_chr3L_6163043_6163216 chr3L - chr3L_6165201_6165255 chr3L_6165200_6165201;chr3L_6165255_6165256 chr3L_6165082_6165200;chr3L_6165256_6165394 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 NA 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.45 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K jcn_only_AD chic,RI_chr2L_5976783_5980950,I_chr2L_5979705_5979818,I_chr2L_5979705_5979941,RI_chr2L_5979705_5979951,I_chr2L_5979705_5979953,I_chr2L_5979705_5980025,I_chr2L_5979705_5980213,I_chr2L_5979705_5980370,I_chr2L_5979705_5980558,I_chr2L_5979705_5980632,I_chr2L_5979705_5980639,RI_chr2L_5979705_5980734 chr2L - chr2L_5979705_5979939;chr2L_5979705_5979959 chr2L_5979705_5980208 chr2L_5979605_5979704;chr2L_5980209_5980475 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.07 0.07 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.11 0.08 0.09 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.08 0.00 0.00 0.00 0.04 0.00 0.00 0.09 0.00 0.00 0.07 0.00 0.06 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.07 0.00 0.04 K alternative_acceptor CG11148,I_chr4_876247_876311,I_chr4_882005_882418,RI_chr4_886921_887162 chr4 - chr4_876195_876311 chr4_876262_876311 chr4_876312_876411;chr4_876147_876194 95.65 93.94 93.94 88.31 100.00 93.10 98.21 98.57 97.33 90.91 91.67 97.01 100.00 97.56 90.48 96.72 100.00 93.10 95.24 96.72 94.44 90.48 90.24 97.14 90.48 96.77 96.67 83.33 100.00 100.00 97.50 100.00 92.00 93.06 92.86 84.62 90.91 96.00 95.45 100.00 91.67 96.88 97.44 96.55 95.65 97.06 93.75 95.45 94.44 98.36 92.59 100.00 93.94 96.00 97.22 85.11 94.23 97.50 K alternative_acceptor dnc,I_chrX_3150245_3150319,I_chrX_3150351_3152643 chrX + chrX_3150245_3152643;chrX_3150245_3150319 chrX_3150245_3152646 chrX_3150235_3150244;chrX_3152647_3152733 22.22 0.00 23.08 25.00 0.00 36.36 12.50 25.00 20.00 NA 25.00 29.17 40.00 10.00 25.00 23.08 0.00 10.00 6.25 31.43 0.00 NA 0.00 33.33 NA 22.22 0.00 NA NA 33.33 17.65 NA 0.00 13.04 33.33 33.33 NA NA NA NA NA 8.70 11.11 NA NA 33.33 0.00 NA 22.58 NA 25.00 NA NA 0.00 18.18 33.33 40.00 NA K intron_retention S6k,I_chr3L_5800361_5803389,RI_chr3L_5801924_5803389 chr3L - chr3L_5800177_5800233 chr3L_5800176_5800177;chr3L_5800233_5800234 chr3L_5800045_5800176;chr3L_5800234_5800311 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA CG10462 chr2L - chr2L_19735222_19735511 chr2L_19735241_19735511 chr2L_19735512_19735633;chr2L_19735000_19735221 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11699,CG11696,CG11695 chrX + chrX_11464810_11464899 chrX_11464809_11464810;chrX_11464899_11464900 chrX_11464741_11464809;chrX_11464900_11464968 0.85 0.48 0.00 0.85 1.27 0.00 0.00 0.00 1.34 0.00 1.12 1.95 0.00 1.27 0.61 5.41 0.00 0.00 1.12 1.79 0.00 4.35 1.26 0.00 0.46 0.00 1.85 1.34 1.70 1.23 2.88 1.31 0.71 0.80 1.35 1.02 0.40 0.78 0.92 3.33 0.80 0.78 0.00 0.00 1.60 0.66 0.76 2.17 1.15 0.95 1.02 0.00 0.42 0.68 0.85 0.00 0.97 1.50 K jcn_only_AA mub,RI_chr3L_21901021_21901163,I_chr3L_21908756_21909179 chr3L + chr3L_21908110_21908213 chr3L_21908110_21908201 chr3L_21907993_21908109;chr3L_21908214_21908295 74.53 71.74 75.00 81.08 68.89 81.08 73.85 68.89 74.76 85.71 72.73 82.54 68.57 73.91 65.22 71.95 67.57 77.55 99.48 82.61 63.89 82.00 66.67 78.95 80.95 83.78 81.08 NA 81.82 58.62 81.16 NA 65.71 76.00 87.23 82.50 72.22 80.00 79.07 73.58 NA 63.51 71.43 91.18 NA 74.29 74.07 64.86 75.90 63.64 65.22 83.33 NA 75.00 75.00 64.52 50.00 70.00 K intron_retention Grip71,CRE_chr2L_18710390_18710442 chr2L + chr2L_18710386_18710440 chr2L_18710385_18710386;chr2L_18710440_18710441 chr2L_18710290_18710385;chr2L_18710441_18711297 0.00 0.00 3.23 0.00 NA 0.00 0.00 0.00 4.65 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.23 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention BtbVII,I_chr3L_3150858_3150927,I_chr3L_3151185_3151263 chr3L + chr3L_3148688_3149627 chr3L_3148687_3148688;chr3L_3149627_3149628 chr3L_3148679_3148687;chr3L_3149628_3150153 18.25 NA NA 53.33 NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA 14.29 NA 22.22 13.33 NA NA NA NA NA NA NA 23.08 NA NA NA NA NA 22.73 11.76 NA NA NA NA NA NA NA NA 10.53 K alternative_donor Vps13,I_chr2R_3464510_3464571 chr2R + chr2R_3454389_3454650 chr2R_3454505_3454650 chr2R_3454651_3454869;chr2R_3454371_3454388 11.76 18.75 14.29 15.00 NA NA 16.67 12.00 13.79 23.08 NA 18.52 NA NA 5.56 5.26 NA 11.76 3.45 10.00 7.14 4.76 5.56 NA NA 18.75 NA NA 11.76 12.50 16.67 NA 23.81 12.00 NA NA 9.68 NA NA 2.56 NA 3.85 NA 10.71 NA NA NA 11.63 5.71 NA NA NA NA NA 3.85 NA NA 15.38 K cassette Camta,RI_chr2R_5364752_5364878 chr2R + chr2R_5362710_5363605 chr2R_5362710_5362813;chr2R_5362931_5363605 chr2R_5362814_5362930 chr2R_5362600_5362709;chr2R_5363606_5363673 77.78 88.89 NA 45.45 62.50 90.00 73.33 77.78 80.95 83.33 70.00 62.50 40.00 63.64 84.62 92.31 60.00 55.56 90.00 84.62 100.00 90.00 70.83 86.67 73.33 77.78 92.31 71.43 90.91 90.91 84.62 NA 64.29 88.89 88.89 73.33 80.95 78.57 65.38 77.78 85.71 76.19 63.64 86.67 88.89 71.43 60.00 75.00 75.00 90.00 77.78 83.33 100.00 64.71 61.54 69.23 73.33 92.31 K jcn_only_AA E(bx),I_chr3L_240127_240176,I_chr3L_246324_246699 chr3L - chr3L_240114_240176;chr3L_240111_240176;chr3L_240127_240176 chr3L_240117_240176 chr3L_240177_240276;chr3L_240027_240110 57.14 54.41 51.49 61.54 55.93 66.04 54.36 66.42 52.67 61.11 70.83 59.88 54.79 50.75 59.72 53.00 57.50 62.64 51.76 57.92 55.56 59.05 61.05 48.68 50.00 54.76 58.82 62.50 58.00 59.72 63.54 52.73 59.82 51.97 58.46 57.14 54.55 46.15 54.74 53.98 59.02 56.52 58.33 50.00 54.76 63.33 61.43 51.80 61.97 61.22 56.14 56.86 60.34 49.15 57.29 58.33 44.23 54.81 K intron_retention cora,I_chr2R_15125277_15130573,I_chr2R_15125940_15130208,I_chr2R_15129291_15129988 chr2R + chr2R_15125940_15126293 chr2R_15125939_15125940;chr2R_15126293_15126294 chr2R_15125887_15125939;chr2R_15126294_15128441 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9099 chrX - chrX_16779835_16779999 chrX_16779834_16779835;chrX_16779999_16780000 chrX_16779579_16779834;chrX_16780000_16780261 3.70 2.74 5.97 4.17 3.85 8.06 4.76 8.51 5.88 4.17 5.77 4.81 5.17 9.80 4.35 3.03 0.00 3.39 6.06 7.50 3.39 0.00 2.60 0.00 5.00 2.82 2.99 4.08 4.11 3.70 4.84 2.78 0.00 9.78 0.00 3.03 1.94 0.00 0.00 5.88 2.80 5.11 6.56 2.78 1.83 1.53 4.84 1.19 6.19 5.05 0.00 0.00 0.00 0.00 5.41 1.75 4.44 2.04 K intron_retention Zasp52,I_chr2R_11661472_11663280,F_chr2R_11662587_11662811,I_chr2R_11690993_11701987 chr2R - chr2R_11661472_11661932 chr2R_11661471_11661472;chr2R_11661932_11661933 chr2R_11661372_11661471;chr2R_11661933_11662085 3.41 3.41 5.77 2.63 1.72 6.82 5.66 5.26 3.70 3.17 3.70 4.00 10.81 4.55 7.46 3.23 2.13 5.08 0.00 2.26 2.38 4.60 4.14 3.38 4.17 0.00 5.88 3.55 0.00 0.91 6.35 0.00 1.89 4.55 2.30 0.00 3.05 1.48 1.61 3.75 0.00 3.01 0.00 4.20 2.19 3.23 0.00 8.55 5.22 5.21 3.68 4.62 0.00 1.20 5.00 4.60 1.64 4.48 K intron_retention Dek chr2R + chr2R_12747080_12747137 chr2R_12747079_12747080;chr2R_12747137_12747138 chr2R_12746958_12747079;chr2R_12747138_12747290 0.00 0.78 0.00 0.00 0.00 0.00 0.42 0.00 0.76 0.00 0.00 0.34 0.50 1.20 0.65 0.00 0.00 0.62 0.00 0.80 0.00 0.00 0.00 0.00 0.00 1.18 2.44 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.49 1.39 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG5973,I_chr2L_7441485_7443583,I_chr2L_7443388_7443583 chr2L + chr2L_7440963_7443583;chr2L_7441757_7443583;chr2L_7440959_7443583 chr2L_7440852_7443583 chr2L_7443584_7443683;chr2L_7440710_7440851 5.91 7.32 6.52 7.53 7.27 10.26 10.59 10.40 5.61 15.38 2.08 9.09 13.83 12.70 11.84 3.97 9.09 9.23 1.39 5.44 2.73 3.57 2.44 6.45 0.00 10.00 1.75 NA NA 0.00 15.22 4.00 0.00 8.86 3.85 2.04 2.38 NA 0.00 3.57 NA 8.07 7.14 NA 0.00 3.92 9.38 10.53 6.21 4.00 2.86 0.00 6.67 0.00 11.54 0.00 1.92 11.43 K cassette CG31158,CI_chr3R_18432763_18433113,CG31159 chr3R + chr3R_18431293_18432918 chr3R_18431293_18432549;chr3R_18432763_18432918 chr3R_18432550_18432762 chr3R_18431075_18431292;chr3R_18432919_18433030 4.55 0.00 4.35 0.00 0.00 4.17 2.78 4.65 1.49 NA NA 18.92 0.00 3.70 5.26 2.70 4.55 6.25 5.26 9.09 0.00 42.86 3.85 8.33 5.88 3.70 8.33 11.11 4.35 5.00 3.12 10.53 10.53 4.65 6.67 4.55 10.53 11.76 15.38 4.76 5.71 7.69 5.26 3.57 4.76 4.17 6.25 3.03 2.04 9.09 2.86 0.00 0.00 0.00 3.33 5.56 0.00 2.50 K intron_retention CG7265 chr3R - chr3R_10719377_10719429 chr3R_10719376_10719377;chr3R_10719429_10719430 chr3R_10718112_10719376;chr3R_10719430_10719670 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 2.80 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette inaE chrX + chrX_13698455_13700564 chrX_13698455_13699484;chrX_13699509_13700564 chrX_13699485_13699508 chrX_13698327_13698454;chrX_13700565_13700697 0.00 1.69 0.00 0.00 0.00 0.00 2.33 2.08 1.39 3.85 0.00 0.00 0.00 0.00 2.70 0.00 0.00 2.94 0.00 1.19 0.00 0.00 1.14 1.54 0.00 0.00 1.72 0.00 0.00 1.92 0.00 0.00 1.75 1.49 2.17 0.00 2.74 0.00 1.72 0.00 0.00 1.23 0.00 1.37 2.38 0.00 0.00 0.00 1.39 0.00 1.69 2.78 0.00 0.00 2.38 0.00 0.00 0.00 K intron_retention Trf4-1,I_chrX_8455293_8457185,RI_chrX_8455791_8457185,R_chrX_8455801_8457185,I_chrX_8455902_8457185,I_chrX_8459198_8459266 chrX + chrX_8454847_8457185 chrX_8454846_8454847;chrX_8457185_8457186 chrX_8454674_8454846;chrX_8457186_8457285 15.56 9.52 15.38 4.65 21.05 12.00 12.12 16.00 19.23 NA 45.45 10.87 11.11 8.33 12.50 20.00 15.00 10.53 20.00 18.52 6.25 NA 24.00 15.15 15.00 31.58 12.50 NA NA NA 11.11 NA NA 15.56 13.33 23.53 26.67 14.29 25.93 21.05 NA 20.37 15.38 35.71 NA 23.08 7.14 NA 14.81 35.71 5.71 18.18 NA 25.00 17.86 21.43 50.00 NA K cassette CG6579,I_chr2L_12175771_12177543,I_chr2L_12176693_12176803 chr2L - chr2L_12175771_12177543 chr2L_12175771_12176803;chr2L_12176975_12177543 chr2L_12176804_12176974 chr2L_12175671_12175770;chr2L_12177544_12177643 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 90.91 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 K intron_retention CG30122,I_chr2R_14526123_14526189 chr2R - chr2R_14520630_14520696 chr2R_14520629_14520630;chr2R_14520696_14520697 chr2R_14520624_14520629;chr2R_14520697_14520868 0.00 0.00 0.00 9.09 8.00 0.00 3.23 14.29 0.00 5.88 0.00 2.82 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.02 0.00 0.00 7.41 3.57 0.00 0.00 10.87 14.58 5.13 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 3.92 2.00 1.79 0.00 0.00 3.51 0.00 0.00 1.47 0.00 K alternative_donor I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545799_17545855;chr2R_17545686_17545855;chr2R_17545615_17545855 chr2R_17545781_17545855 chr2R_17545856_17545985;chr2R_17545613_17545614 38.10 40.00 30.77 25.93 20.00 14.29 50.00 25.00 31.82 83.33 33.33 26.09 28.57 23.08 20.00 29.41 18.18 26.09 25.00 18.52 15.38 75.00 85.71 83.33 40.00 15.38 60.00 25.00 88.89 80.00 28.57 50.00 33.33 21.74 NA NA 87.50 50.00 71.43 53.85 62.50 21.43 7.14 80.00 38.10 81.82 80.00 27.27 25.00 50.00 66.67 50.00 50.00 80.00 4.17 60.00 77.78 50.00 K alternative_donor Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19546851_19547916;chr2R_19547223_19547916 chr2R_19546876_19547916 chr2R_19547917_19547942;chr2R_19546810_19546850 6.90 12.00 6.90 4.17 4.76 NA NA 8.70 2.74 NA 10.71 7.27 6.25 3.33 5.71 8.70 4.00 5.00 6.90 11.43 5.88 6.67 12.20 13.33 9.09 4.17 25.93 7.14 NA 14.29 3.23 0.00 3.45 6.52 8.00 5.56 5.41 9.09 3.12 18.18 NA 5.45 NA 6.90 8.33 6.25 9.52 12.00 8.16 8.33 4.55 10.00 22.22 NA 6.06 14.29 4.76 16.67 K intron_retention CG6796 chr2R + chr2R_12889896_12889958 chr2R_12889895_12889896;chr2R_12889958_12889959 chr2R_12889688_12889895;chr2R_12889959_12891107 0.00 NA NA NA NA NA NA 7.14 NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention noncoding_21514 chrX + chrX_1959778_1959849 chrX_1959777_1959778;chrX_1959849_1959850 chrX_1959741_1959777;chrX_1959850_1959924 40.03 NA NA 85.71 NA NA 38.46 NA 41.18 NA NA 30.00 NA NA 54.55 31.58 NA 25.00 NA 25.00 NA 91.67 53.85 41.67 NA 88.89 80.00 NA 66.67 50.00 29.41 NA 38.89 NA NA 60.00 NA NA 30.77 29.41 NA 36.36 NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA K multi_cassette Asph,C_chr2R_12000224_12000293,RI_chr2R_12000764_12001150,I_chr2R_12001184_12001280,I_chr2R_12002559_12002858,I_chr2R_12003264_12003325 chr2R + chr2R_12000475_12002276 chr2R_12000475_12001280;chr2R_12001389_12001539;chr2R_12002139_12002276 chr2R_12001281_12001388;chr2R_12001540_12002138 chr2R_12000452_12000474;chr2R_12002277_12002371 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG42595,I_chr2RHet_3155517_3174709,RI_chr2RHet_3175044_3179353,RI_chr2RHet_3179300_3179586,I_chr2RHet_3179481_3179586 chr2RHet - chr2RHet_3179297_3179353 chr2RHet_3179300_3179353 chr2RHet_3179354_3179453;chr2RHet_3179200_3179296 66.07 NA NA 68.75 NA NA 63.64 63.16 66.07 NA NA 66.67 66.67 NA NA 64.29 NA NA 71.43 57.14 NA NA NA NA NA NA NA NA NA NA 79.17 NA NA 56.52 NA NA NA NA NA NA NA 58.33 70.00 70.00 NA NA NA NA 57.45 NA NA NA NA NA NA NA NA NA K intron_retention Psi,I_chr2R_12751549_12752073,I_chr2R_12753387_12753659 chr2R - chr2R_12751549_12752073 chr2R_12751548_12751549;chr2R_12752073_12752074 chr2R_12751449_12751548;chr2R_12752074_12752173 96.29 NA 93.75 95.65 100.00 100.00 100.00 93.10 100.00 NA NA 96.43 100.00 100.00 94.12 96.55 90.91 90.00 100.00 97.14 87.50 100.00 92.31 91.67 100.00 92.86 100.00 100.00 94.12 94.12 95.00 91.67 94.74 96.15 92.31 NA 90.00 NA 88.89 100.00 100.00 95.65 100.00 100.00 100.00 100.00 91.67 96.97 94.29 NA 100.00 NA 100.00 100.00 93.33 92.31 100.00 92.86 K cassette Pi4KIIalpha,I_chr3R_1385525_1386498 chr3R - chr3R_1385525_1387988 chr3R_1385525_1385796;chr3R_1385916_1387988 chr3R_1385797_1385915 chr3R_1385425_1385524;chr3R_1387989_1388057 100.00 100.00 100.00 98.21 100.00 100.00 100.00 96.55 98.67 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.90 100.00 100.00 97.78 98.89 100.00 97.83 95.45 100.00 97.96 98.41 97.46 100.00 98.88 97.22 98.44 98.33 100.00 100.00 98.88 100.00 100.00 100.00 100.00 97.96 96.77 100.00 100.00 100.00 98.98 K intron_retention CG8607,CG8605 chr3L + chr3L_7313309_7313381 chr3L_7313308_7313309;chr3L_7313381_7313382 chr3L_7313183_7313308;chr3L_7313382_7313464 17.71 NA NA 9.52 NA NA NA 18.75 5.56 NA NA NA NA NA NA 43.75 NA NA NA 26.32 NA NA 63.64 NA NA NA NA NA NA NA 58.82 NA NA NA NA NA 13.33 NA NA NA NA 23.53 NA NA NA NA NA NA 14.29 NA NA NA NA NA NA 16.67 9.09 NA K intron_retention CG14977 chr3L + chr3L_3897092_3897147 chr3L_3897091_3897092;chr3L_3897147_3897148 chr3L_3896939_3897091;chr3L_3897148_3897529 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention hook,CG31800 chr2L - chr2L_19031242_19031292 chr2L_19031241_19031242;chr2L_19031292_19031293 chr2L_19031164_19031241;chr2L_19031293_19031361 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 1.79 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention didum,I_chr2R_3393005_3393348 chr2R + chr2R_3393525_3393581 chr2R_3393524_3393525;chr2R_3393581_3393582 chr2R_3393344_3393524;chr2R_3393582_3394094 0.00 0.00 0.00 3.57 0.00 0.00 4.17 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 1.75 0.00 0.00 1.96 2.56 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.74 0.00 6.90 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG15747 chrX + chrX_13234461_13234519 chrX_13234460_13234461;chrX_13234519_13234520 chrX_13234198_13234460;chrX_13234520_13235036 50.00 NA NA 92.31 NA NA 84.62 53.85 31.25 NA NA 64.29 NA NA 63.64 35.48 NA NA NA NA NA NA 63.64 NA NA NA NA NA NA NA 40.00 NA NA 53.33 NA NA NA NA NA NA NA 50.00 41.67 NA NA NA NA NA 43.75 30.77 NA NA NA NA 50.00 NA NA NA K jcn_only_AD X11L,I_chrX_17497609_17497728,RE_chrX_17497873_17498103 chrX + chrX_17497505_17497728 chrX_17497609_17497728 chrX_17497729_17497739;chrX_17497189_17497504 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.68 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 1.52 2.86 1.89 2.74 0.00 16.00 0.00 3.17 3.57 0.00 2.47 0.00 0.00 0.00 0.00 0.00 1.25 4.35 0.00 0.00 0.00 2.56 2.56 0.00 NA 1.16 0.00 1.18 0.00 0.00 0.00 1.75 2.50 2.99 NA K intron_retention drpr,I_chr3L_1718154_1723579,I_chr3L_1720385_1723579 chr3L - chr3L_1719746_1719922 chr3L_1719745_1719746;chr3L_1719922_1719923 chr3L_1718706_1719745;chr3L_1719923_1720169 4.17 4.84 3.60 6.76 2.76 5.19 3.52 5.48 4.30 3.90 2.30 5.03 4.17 2.44 4.94 4.30 2.88 5.23 4.44 3.27 4.21 10.07 4.74 5.03 8.54 7.75 6.14 5.48 2.91 2.01 2.69 5.21 2.34 4.28 4.95 10.11 1.37 3.01 3.66 4.12 6.59 3.02 1.01 5.30 2.65 4.96 2.21 4.85 2.63 3.60 3.23 4.76 2.06 0.00 3.78 0.89 0.64 4.21 K intron_retention 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5993331_5993445 chr2R_5993330_5993331;chr2R_5993445_5993446 chr2R_5993231_5993330;chr2R_5993446_5993532 2.22 1.41 1.25 3.45 1.65 2.27 2.13 2.41 2.05 2.39 2.51 2.78 2.14 2.00 1.84 2.87 2.34 0.88 1.98 2.36 1.60 2.81 3.13 2.46 2.19 0.88 3.20 3.10 2.86 3.55 3.10 3.87 4.55 1.99 3.45 1.94 2.39 3.12 2.14 1.93 2.43 1.94 2.23 1.74 2.22 2.95 1.50 3.46 2.08 2.10 1.89 3.26 1.91 1.37 1.65 2.08 1.48 2.28 K intron_retention CG4896,REI_chr2L_1179197_1179859,I_chr2L_1191535_1191648 chr2L + chr2L_1182105_1182169 chr2L_1182104_1182105;chr2L_1182169_1182170 chr2L_1181855_1182104;chr2L_1182170_1182454 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 3.23 0.00 0.00 0.00 17.95 0.00 2.44 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CtBP chr3R + chr3R_8847365_8851110 chr3R_8847364_8847365;chr3R_8851110_8851111 chr3R_8847142_8847364;chr3R_8851111_8851987 41.67 36.11 42.86 51.11 41.38 52.17 41.38 55.88 51.61 41.67 75.00 37.74 43.33 42.86 48.15 52.00 57.14 44.00 57.14 38.30 60.00 48.10 38.89 30.91 29.03 50.00 39.39 39.13 37.78 41.67 48.28 39.13 58.82 42.86 36.36 37.04 28.33 38.10 39.13 40.00 41.38 34.38 52.38 43.59 21.74 35.29 41.03 60.87 47.92 36.17 45.00 42.86 28.57 32.00 53.33 36.00 26.19 41.67 K alternative_donor CG32767,C_chrX_4971728_4974895,RI_chrX_4978019_4978605 chrX - chrX_4972060_4972153 chrX_4972060_4972150 chrX_4970568_4972059;chrX_4972154_4972741 93.31 100.00 100.00 93.75 90.91 87.50 90.00 95.00 95.00 93.75 91.67 95.24 91.67 100.00 93.75 88.89 92.31 66.67 100.00 97.06 NA 95.00 94.12 80.00 100.00 100.00 94.44 100.00 91.67 90.00 90.91 NA 96.30 91.67 90.91 90.00 95.65 88.89 94.12 85.71 87.50 90.32 100.00 92.86 NA 90.00 87.50 93.75 90.00 NA 100.00 100.00 NA NA 90.91 NA 100.00 90.91 K alternative_acceptor CG5872,RI_chr3L_20430213_20430346,RI_chr3L_20430213_20430358 chr3L + chr3L_20430213_20430353;chr3L_20430213_20430358 chr3L_20430213_20430346 chr3L_20430113_20430212;chr3L_20430359_20430446 13.39 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA 14.29 NA NA NA NA NA NA NA NA 12.50 NA NA NA 14.29 NA 6.25 11.11 NA NA NA NA NA NA NA NA 0.00 K intron_retention CG6860,RFI_chr2L_17371821_17372564 chr2L - chr2L_17371821_17372564 chr2L_17371820_17371821;chr2L_17372564_17372565 chr2L_17371752_17371820;chr2L_17372565_17372642 0.00 0.00 0.00 6.25 4.35 NA 10.53 11.54 4.84 0.00 0.00 5.71 0.00 4.76 0.00 8.82 NA 3.45 10.53 10.53 0.00 0.00 0.00 0.00 0.00 NA 3.57 13.64 6.67 0.00 4.76 NA 0.00 12.50 0.00 9.52 0.00 0.00 0.00 1.75 NA 8.20 5.56 0.00 0.00 0.00 0.00 0.00 8.57 0.00 2.00 0.00 0.00 0.00 4.76 5.26 NA 0.00 K intron_retention Rip11,E_chrX_18532733_18533695,RI_chrX_18530353_18530870,RI_chrX_18530742_18530870,RI_chrX_18544139_18544185 chrX - chrX_18530353_18530646 chrX_18530352_18530353;chrX_18530646_18530647 chrX_18530253_18530352;chrX_18530647_18530741 5.75 5.41 5.11 4.71 9.40 9.33 10.75 6.33 5.56 3.70 8.76 13.64 8.08 6.93 7.69 6.03 12.87 7.89 13.41 5.31 5.22 12.16 6.28 5.48 10.05 16.85 5.37 10.25 10.78 3.95 4.88 4.83 4.83 6.41 6.60 7.53 5.40 5.13 6.61 5.00 7.67 5.21 5.65 6.35 4.74 6.16 4.80 5.33 5.75 4.76 6.30 5.43 2.79 4.41 8.17 4.27 2.93 4.08 K alternative_donor Sdc,RI_chr2R_17286086_17286391,I_chr2R_17286089_17286391,I_chr2R_17286819_17367595,I_chr2R_17324594_17367595 chr2R - chr2R_17286086_17286679 chr2R_17286086_17286391 chr2R_17286037_17286085;chr2R_17286680_17286818 10.17 9.26 9.76 15.24 2.56 4.44 18.52 16.25 10.17 15.62 56.10 6.52 25.81 5.77 6.25 12.90 12.82 8.33 12.77 10.34 31.11 11.34 10.94 4.17 7.55 10.81 7.02 9.52 16.92 10.45 6.12 10.81 17.07 11.11 9.09 24.53 14.29 11.32 9.52 18.57 13.64 12.94 7.69 13.04 3.28 8.22 8.51 12.24 9.30 9.09 8.62 9.76 4.84 8.11 11.11 5.88 2.50 4.27 K intron_retention CG17746,I_chr3L_3238983_3250343 chr3L - chr3L_3238983_3239421 chr3L_3238982_3238983;chr3L_3239421_3239422 chr3L_3238883_3238982;chr3L_3239422_3240119 1.65 0.00 3.03 1.09 1.47 0.00 4.49 0.00 1.97 0.00 0.00 1.90 0.00 0.00 2.50 0.00 3.57 3.17 0.00 1.50 1.96 7.41 0.91 2.20 3.64 0.00 4.76 7.69 5.00 1.64 0.00 7.89 5.71 0.96 4.35 0.00 0.61 0.00 0.00 4.81 6.90 1.80 0.00 2.41 4.17 5.00 0.00 2.04 1.65 2.60 2.67 1.54 1.92 0.00 0.00 0.00 1.14 1.82 K alternative_donor CG16940,I_chr3L_212740_212843,I_chr3L_212783_212843,noncoding_9585,Kaz1-ORFA_Kaz1-ORFB chr3L + chr3L_212785_212843;chr3L_212308_212843 chr3L_212788_212843 chr3L_212844_212943;chr3L_212275_212307 15.91 11.76 21.05 16.00 20.00 14.29 10.71 14.29 15.91 11.11 11.11 14.29 7.14 18.75 13.64 23.08 23.08 19.05 16.67 12.77 9.52 21.74 19.23 22.22 15.38 20.00 21.74 15.79 31.58 10.00 22.22 33.33 11.11 19.23 12.50 35.00 15.38 12.50 21.74 16.67 22.22 14.29 12.50 13.33 13.64 13.79 12.50 12.00 15.15 19.23 25.00 16.67 16.67 17.65 22.73 17.39 11.54 8.82 K cassette CG13384 chr2L + chr2L_8384896_8386216 chr2L_8384896_8384996;chr2L_8385098_8386216 chr2L_8384997_8385097 chr2L_8384754_8384895;chr2L_8386217_8386384 99.64 99.10 100.00 99.67 99.55 98.51 99.75 99.77 100.00 97.83 99.55 99.72 99.52 99.55 100.00 99.68 100.00 99.51 99.64 100.00 100.00 100.00 99.68 99.63 100.00 99.52 98.95 99.30 96.69 99.03 99.62 100.00 98.09 100.00 99.45 99.44 99.64 99.50 99.13 99.61 100.00 99.78 99.10 100.00 100.00 99.55 100.00 98.79 99.76 98.52 99.64 100.00 100.00 99.26 99.64 100.00 99.54 100.00 K intron_retention RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817 chr2R + chr2R_15330062_15330122 chr2R_15330061_15330062;chr2R_15330122_15330123 chr2R_15329948_15330061;chr2R_15330123_15330245 45.45 NA NA 36.36 NA NA 74.07 NA 70.00 NA NA 38.89 NA NA NA 63.64 NA NA NA 42.86 NA 30.77 29.41 45.45 58.33 NA 80.00 NA 46.15 NA 20.00 NA NA NA NA 92.31 NA NA NA 25.00 47.06 47.06 NA NA NA 31.58 27.27 NA 50.00 41.67 40.00 NA 46.67 25.00 NA 45.45 63.64 26.32 N alternative_donor 4EHP,RI_chr3R_19927769_19928262,Syx1A chr3R - chr3R_19927769_19932546;chr3R_19927769_19928262 chr3R_19927769_19929293 chr3R_19927676_19927768;chr3R_19932547_19933006 90.91 91.55 92.13 88.67 89.04 91.57 85.71 85.71 90.91 90.16 88.31 91.89 91.67 90.12 92.55 80.80 94.74 89.19 89.41 89.62 34.92 90.84 92.62 94.12 90.00 90.67 91.67 87.30 92.86 89.74 90.62 81.08 91.67 90.34 90.91 90.00 95.83 92.86 93.81 92.19 88.68 92.35 91.78 93.41 90.38 91.04 90.16 93.28 90.74 81.40 90.91 91.38 91.07 91.67 93.81 91.11 89.29 91.14 K alternative_donor HmgZ,RI_chr2R_17586106_17589692,I_chr2R_17586106_17590061,I_chr2R_17586106_17591464 chr2R - chr2R_17586106_17590181 chr2R_17586106_17590177 chr2R_17586006_17586105;chr2R_17590182_17590873 8.43 8.33 9.32 9.15 8.14 8.43 8.53 9.32 9.61 11.48 4.00 9.94 8.74 6.96 9.49 8.95 7.37 5.88 6.94 8.04 10.99 4.71 11.96 8.51 10.64 6.25 13.16 5.56 9.43 7.06 6.16 6.85 5.23 7.48 8.33 8.05 7.61 8.06 10.67 4.43 6.06 6.94 6.80 10.00 7.96 8.97 9.88 8.33 8.44 12.03 10.34 10.91 6.06 9.30 6.10 10.75 10.83 9.41 K intron_retention Cdk4,I_chr2R_12470829_12471656,RI_chr2R_12471503_12471656 chr2R + chr2R_12470542_12471656 chr2R_12470541_12470542;chr2R_12471656_12471657 chr2R_12470376_12470541;chr2R_12471657_12471756 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.53 9.09 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.08 0.00 0.00 0.00 6.38 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 4.65 0.00 3.57 2.82 2.38 0.00 0.00 6.25 0.00 5.00 0.00 7.32 4.88 K intron_retention Arf102F,RI_chr4_1144958_1145393,I_chr4_1152220_1152710,I_chr4_1152585_1152687 chr4 + chr4_1145520_1145575 chr4_1145519_1145520;chr4_1145575_1145576 chr4_1145453_1145519;chr4_1145576_1145637 0.00 0.00 0.79 2.00 0.00 0.00 2.47 0.47 1.13 0.00 0.00 2.07 0.00 1.01 0.00 1.08 0.00 0.00 1.89 1.84 0.00 2.22 0.00 0.00 5.88 2.11 1.43 0.00 0.00 0.00 0.74 0.00 2.13 1.65 0.00 2.08 0.00 3.92 0.00 0.00 15.69 1.92 2.02 0.00 0.00 0.98 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 K alternative_acceptor CG4877 chr3L + chr3L_16379595_16379731;chr3L_16379595_16379772 chr3L_16379595_16379725 chr3L_16379486_16379594;chr3L_16379773_16380052 28.57 NA NA 25.00 NA NA 50.00 25.00 50.00 NA NA 41.67 NA NA NA 20.00 NA 60.00 NA 36.36 NA NA 11.11 NA 20.00 NA NA 50.00 NA NA NA NA NA 25.00 NA NA NA NA 40.00 60.00 NA 27.27 NA NA NA NA NA NA 33.33 NA 28.57 NA 16.67 NA 25.00 NA NA NA K alternative_acceptor CG8455 chr2L + chr2L_8200281_8200350 chr2L_8200281_8200345 chr2L_8200102_8200280;chr2L_8200351_8200652 93.33 91.67 NA 94.74 100.00 NA 85.71 95.45 93.10 100.00 87.50 100.00 91.67 92.31 93.75 90.00 92.31 100.00 100.00 86.21 91.67 75.00 100.00 93.33 90.91 100.00 100.00 83.33 100.00 88.89 100.00 100.00 NA 96.43 90.91 88.89 86.67 92.31 100.00 92.86 100.00 94.74 100.00 91.67 100.00 100.00 85.71 100.00 86.36 93.33 94.12 84.62 100.00 90.91 94.12 93.33 95.45 92.31 K intron_retention CG7843,I_chr2R_1972736_1972822 chr2R - chr2R_1971896_1972012 chr2R_1971895_1971896;chr2R_1972012_1972013 chr2R_1971674_1971895;chr2R_1972013_1972292 33.24 NA NA 26.67 NA NA NA 30.77 NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.90 NA NA 45.45 NA NA NA NA NA NA NA 21.43 NA NA NA NA NA NA 35.71 NA 46.15 NA NA NA NA NA NA NA K alternative_acceptor mnb chrX - chrX_17762200_17763014;chrX_17762403_17763014 chrX_17762203_17763014 chrX_17763015_17763849;chrX_17762180_17762199 0.00 0.00 0.00 NA 20.00 25.00 0.00 NA 7.14 0.00 0.00 0.00 0.00 0.00 16.67 0.00 0.00 NA 0.00 0.00 0.00 0.00 8.33 0.00 0.00 NA 6.25 10.00 0.00 9.09 0.00 NA 0.00 0.00 0.00 NA 0.00 9.09 6.67 0.00 NA 0.00 20.00 0.00 0.00 16.67 0.00 0.00 0.00 10.00 0.00 14.29 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention Ect4,I_chr3L_8075556_8086158,I_chr3L_8089973_8090123,I_chr3L_8089977_8091445,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8089977_8090070 chr3L_8089976_8089977;chr3L_8090070_8090071 chr3L_8089959_8089976;chr3L_8090071_8090087 75.00 80.00 81.82 86.96 88.89 80.00 81.82 82.98 77.42 NA 63.64 80.49 78.57 76.92 70.59 76.47 60.87 75.00 74.19 78.57 64.29 NA 75.00 63.64 NA 72.73 77.78 NA 100.00 72.73 69.23 NA NA 74.51 92.86 41.67 63.64 80.00 NA 75.00 NA 74.29 73.91 76.92 NA 69.23 NA 80.00 80.95 NA 72.73 90.91 60.00 NA 72.22 NA NA 75.00 K jcn_only_AA CG12340,I_chr2R_6688558_6688738,I_chr2R_6688672_6688738 chr2R - chr2R_6688672_6688738 chr2R_6688677_6688738 chr2R_6688739_6688838;chr2R_6688572_6688671 97.59 96.43 100.00 97.83 100.00 100.00 96.55 100.00 96.23 NA NA 100.00 NA 100.00 96.88 96.67 NA 93.55 96.77 98.39 96.97 100.00 100.00 97.62 90.32 96.43 100.00 100.00 94.00 97.56 NA 97.96 98.28 92.31 96.97 100.00 100.00 96.15 100.00 99.00 100.00 100.00 95.00 100.00 94.67 96.05 100.00 97.00 96.08 96.49 96.43 95.45 96.67 100.00 95.24 100.00 100.00 96.00 K alternative_acceptor CG34408,I_chrX_10120689_10121004 chrX + chrX_10120689_10121435;chrX_10120689_10121444 chrX_10120689_10121381 chrX_10120589_10120688;chrX_10121445_10121990 4.76 5.56 0.00 8.33 0.00 0.00 0.00 0.00 4.35 20.00 0.00 4.76 0.00 0.00 8.33 0.00 16.67 0.00 NA 8.70 7.14 14.63 4.76 10.00 0.00 0.00 7.14 25.00 11.11 5.26 0.00 0.00 9.09 5.56 8.33 0.00 7.41 7.69 5.00 10.00 0.00 4.00 0.00 13.64 0.00 5.26 0.00 11.11 0.00 0.00 9.52 0.00 0.00 8.33 6.25 14.29 0.00 0.00 K intron_retention CG41099,I_chr3RHet_1688173_1688235,I_chr3RHet_1688505_1705884,RI_chr3RHet_1703294_1705884 chr3RHet - chr3RHet_1688184_1688235 chr3RHet_1688183_1688184;chr3RHet_1688235_1688236 chr3RHet_1687336_1688183;chr3RHet_1688236_1688330 0.00 NA NA 0.00 NA NA 0.00 0.00 10.00 NA NA 4.76 NA 0.00 NA 18.18 13.33 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 5.71 0.00 NA NA NA NA NA 2.56 NA NA NA NA NA 0.00 NA NA NA K cassette CG11284,I_chrX_8581798_8581850,Ogg1 chrX + chrX_8575862_8581264 chrX_8575862_8580727;chrX_8581088_8581264 chrX_8580728_8581087 chrX_8575793_8575861;chrX_8581265_8581775 100.00 100.00 100.00 98.15 98.77 98.86 100.00 100.00 100.00 99.13 100.00 100.00 100.00 98.73 99.07 100.00 100.00 100.00 100.00 99.49 100.00 100.00 98.31 100.00 100.00 100.00 99.15 100.00 99.18 99.24 98.99 100.00 98.44 100.00 99.07 97.56 99.44 100.00 100.00 99.49 99.35 99.47 100.00 99.08 98.76 99.46 99.06 99.52 99.37 100.00 100.00 98.97 100.00 100.00 100.00 100.00 100.00 99.48 K alternative_donor GlcAT-S chr2L + chr2L_9617610_9621144 chr2L_9617841_9621144 chr2L_9621145_9621417;chr2L_9616838_9617609 10.00 NA NA 6.67 NA NA NA 10.00 9.09 5.56 NA 20.00 NA NA NA NA NA NA NA 12.50 NA 30.77 6.67 20.00 NA 30.00 NA NA 14.29 7.14 NA NA 11.11 NA NA 18.18 NA NA 5.56 4.76 NA 16.67 NA 11.11 NA 5.88 NA 6.25 NA NA NA NA NA NA NA NA NA 0.00 K alternative_donor CG17385,I_chr2R_10298790_10298843 chr2R - chr2R_10298790_10298841;chr2R_10298790_10298847 chr2R_10298790_10298843 chr2R_10298690_10298789;chr2R_10298848_10298916 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2389073;chrX_2389272_2389644;chrX_2389762_2395659 chrX_2389074_2389271;chrX_2389645_2389761 chrX_2387149_2387248;chrX_2395660_2395759 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 2.04 K intron_retention CG5073 chr3R + chr3R_11198295_11198352 chr3R_11198294_11198295;chr3R_11198352_11198353 chr3R_11198273_11198294;chr3R_11198353_11198485 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG10979,RI_chr3R_1621781_1621856 chr3R + chr3R_1621781_1622150 chr3R_1621781_1621856 chr3R_1621681_1621780;chr3R_1622151_1625521 3.64 2.63 2.94 2.38 2.38 0.00 4.23 9.76 4.30 3.70 7.32 1.30 10.00 6.90 2.50 2.33 7.69 17.65 0.00 4.35 7.69 9.76 1.39 2.04 5.36 5.26 0.00 5.56 4.35 5.26 2.50 0.00 3.57 4.48 9.76 0.00 3.12 2.50 0.00 1.28 3.33 1.30 12.00 8.16 13.64 13.33 12.20 0.00 0.00 0.00 3.64 2.04 4.00 12.00 9.52 0.00 3.33 4.00 K intron_retention CG15609,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12902708_12903163 chr2R_12902707_12902708;chr2R_12903163_12903164 chr2R_12902608_12902707;chr2R_12903164_12903395 0.00 NA 0.00 5.56 NA 6.67 16.67 0.00 8.33 NA NA 4.35 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 7.69 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 6.25 0.00 NA NA NA NA 9.52 NA 0.00 NA 4.76 NA 0.00 NA 0.00 6.67 NA 0.00 NA NA NA 0.00 NA NA NA K alternative_acceptor eIF-1A chr3R + chr3R_14100479_14100588;chr3R_14100479_14100566 chr3R_14100479_14100547 chr3R_14100417_14100478;chr3R_14100589_14100702 0.99 1.10 0.67 0.80 1.24 0.99 0.74 0.93 0.62 1.85 0.96 0.87 1.22 0.00 0.55 0.67 0.72 0.85 0.74 0.65 0.99 2.26 1.36 1.40 1.67 2.60 1.09 2.21 3.87 2.22 0.47 0.96 0.00 1.25 0.00 0.49 2.06 1.26 0.55 1.57 1.45 0.80 1.17 3.62 0.60 2.02 0.70 3.51 0.71 1.11 1.01 1.66 1.00 1.31 0.84 0.74 0.80 5.05 K intron_retention CG3305,CREI_chr2L_21573959_21574786 chr2L + chr2L_21575114_21575964 chr2L_21575113_21575114;chr2L_21575964_21575965 chr2L_21574787_21575113;chr2L_21575965_21576186 0.55 0.62 0.24 1.63 0.69 0.65 0.60 0.70 0.54 0.00 0.67 0.77 1.07 0.28 0.61 0.96 0.66 0.00 0.78 0.53 0.65 0.48 0.55 0.44 0.26 0.79 0.34 0.50 1.70 0.50 0.40 0.66 0.29 0.68 0.94 0.96 0.00 0.40 0.38 0.29 0.73 0.75 0.89 0.00 0.00 0.31 0.32 0.57 0.42 0.47 0.58 0.00 0.00 0.00 0.68 0.57 0.00 0.73 K jcn_only_AD RpS16,RI_chr2R_18493796_18494013,I_chr2R_18494146_18494441 chr2R + chr2R_18493794_18494013 chr2R_18493796_18494013 chr2R_18494014_18494064;chr2R_18493752_18493793 0.03 0.00 0.00 0.02 0.00 0.04 0.02 0.00 0.03 0.04 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.01 0.00 0.04 0.03 0.04 0.07 0.12 0.00 0.09 0.05 0.02 0.00 0.03 0.02 0.00 0.03 0.02 0.06 0.07 0.09 0.04 0.00 0.03 0.00 0.03 0.00 0.02 0.05 0.00 0.08 0.06 0.08 0.19 0.02 0.06 0.03 0.06 0.05 0.02 K intron_retention CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2815657_2816013 chr2R_2815656_2815657;chr2R_2816013_2816014 chr2R_2815599_2815656;chr2R_2816014_2816113 63.64 NA NA NA NA NA 88.89 NA 60.00 NA NA 76.92 NA NA NA NA NA NA NA 57.14 NA 93.75 55.00 46.15 NA NA 63.64 NA NA 71.43 NA NA 47.06 NA NA 61.54 57.14 NA 71.43 63.16 70.00 77.78 NA NA 60.00 71.43 NA 75.00 NA 58.33 NA NA NA NA NA 87.50 NA NA K alternative_acceptor CG4699 chr3R + chr3R_11624200_11624445 chr3R_11624200_11624442 chr3R_11623809_11624199;chr3R_11624446_11624758 73.68 69.23 72.22 76.47 70.00 78.57 65.52 78.57 70.83 71.43 78.95 80.95 63.16 72.22 83.33 77.27 84.62 73.33 71.43 75.00 64.29 76.92 70.73 67.16 73.81 68.18 75.00 73.02 74.14 75.34 81.82 59.46 74.07 76.67 73.68 70.45 75.64 71.43 73.68 80.68 70.00 68.89 88.24 68.97 82.14 68.29 75.47 75.93 71.43 73.21 75.36 67.65 69.64 74.36 70.00 74.47 80.00 77.14 K intron_retention nvy,I_chr2R_20177146_20177208 chr2R + chr2R_20172598_20175547 chr2R_20172597_20172598;chr2R_20175547_20175548 chr2R_20172351_20172597;chr2R_20175548_20175871 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 7.69 0.00 0.00 0.00 NA 0.00 0.00 8.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 4.17 NA NA 0.00 NA NA NA NA 0.00 0.00 NA K jcn_only_AD tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5960101;chr3R_5959310_5960041;chr3R_5959310_5959789;chr3R_5959310_5960049;chr3R_5959310_5960182;chr3R_5959310_5960026;chr3R_5959310_5960158;chr3R_5959310_5959679 chr3R_5959310_5960163 chr3R_5958937_5959309;chr3R_5960183_5960224 0.00 0.00 0.00 2.38 0.00 0.00 2.86 1.85 0.83 4.76 0.00 1.30 5.17 1.85 2.13 0.00 0.00 0.00 4.62 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.03 1.05 0.00 0.00 NA NA NA 2.00 0.00 5.49 0.00 0.00 0.00 0.00 NA 0.00 2.15 0.00 2.50 0.00 NA NA 2.44 0.00 NA 0.00 K intron_retention CG6144 chr2L + chr2L_10488989_10489051 chr2L_10488988_10488989;chr2L_10489051_10489052 chr2L_10488679_10488988;chr2L_10489052_10490463 14.81 10.53 NA 25.00 NA 13.33 18.75 8.70 14.81 NA 30.77 13.04 NA NA 22.22 11.76 NA NA NA 15.38 12.50 17.65 19.05 0.00 NA 20.00 30.00 30.00 22.73 NA 8.33 NA NA 17.65 15.38 40.00 4.00 NA 12.50 14.29 NA 16.67 NA NA NA 14.29 16.67 NA 10.00 0.00 15.00 NA NA NA 0.00 5.88 0.00 NA K intron_retention CG30389,I_chr2R_17044803_17047935 chr2R - chr2R_17037451_17037513 chr2R_17037450_17037451;chr2R_17037513_17037514 chr2R_17037238_17037450;chr2R_17037514_17037706 0.00 0.00 0.00 0.00 0.00 0.00 0.41 1.32 0.40 0.72 0.00 0.00 0.91 0.00 0.00 2.48 0.00 0.00 0.00 1.20 0.00 0.00 0.31 0.83 0.00 0.00 1.44 4.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 N alternative_acceptor Iap2,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11821304_11821703 chr2R_11821325_11821703 chr2R_11821704_11822085;chr2R_11820289_11821303 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 72.82 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_last_exon CoRest,I_chrX_19418197_19418377,CE_chrX_19418197_19419948,F_chrX_19418197_19421609,RF_chrX_19418197_19422673 chrX + chrX_19418197_19422667 chrX_19418197_19419211 chrX_19422668_19422856 chrX_19419212_19419889 chrX_19418097_19418196 1.64 2.78 2.35 4.44 1.47 1.19 2.22 2.86 2.11 0.00 1.82 2.17 1.85 3.33 2.47 5.43 1.96 1.52 2.99 0.94 1.75 0.93 2.06 1.27 1.64 0.00 1.49 17.24 1.09 2.15 1.27 1.01 1.14 2.44 1.45 2.67 0.93 1.41 1.54 0.55 1.85 1.11 1.64 1.72 0.76 1.65 2.00 0.38 1.94 5.56 1.16 0.00 1.45 1.61 1.15 1.61 3.23 0.49 K intron_retention CG34430 chr2R + chr2R_3831109_3831168 chr2R_3831108_3831109;chr2R_3831168_3831169 chr2R_3830947_3831108;chr2R_3831169_3831402 19.57 16.67 22.73 39.39 28.57 NA 20.00 24.24 19.57 NA 47.06 31.25 20.83 37.50 40.00 45.45 22.22 5.88 45.45 18.92 30.00 9.68 24.32 16.67 6.25 22.22 21.62 40.00 13.89 25.81 19.05 18.75 11.76 35.48 16.67 15.00 18.18 25.93 18.42 16.13 7.41 18.42 22.22 20.00 10.00 6.25 12.50 4.35 28.57 11.36 12.77 8.70 NA 0.00 33.33 8.33 33.33 NA K alternative_donor spd-2,noncoding_13013,I_chr3L_16587921_16587973 chr3L - chr3L_16587921_16587981 chr3L_16587921_16587973 chr3L_16587821_16587920;chr3L_16587982_16588073 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 2.56 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.27 0.00 0.00 2.50 3.03 4.76 0.00 3.23 0.00 0.00 0.00 5.00 0.00 0.00 0.00 3.33 0.00 0.00 2.94 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor SmG chrX - chrX_16534047_16534125 chrX_16534064_16534125 chrX_16534126_16534194;chrX_16533995_16534046 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG2003 chr3R + chr3R_27812850_27814973;chr3R_27812907_27814973 chr3R_27812832_27814973 chr3R_27814974_27815051;chr3R_27812763_27812831 5.56 4.55 7.69 0.00 7.14 8.33 4.76 7.41 4.23 0.00 0.00 4.35 5.00 6.67 3.70 3.57 4.00 7.69 3.33 10.00 6.67 12.50 0.00 6.25 11.11 4.76 9.52 NA 9.09 5.56 5.00 5.26 18.42 7.55 4.55 6.25 9.09 0.00 0.00 3.85 14.81 7.27 4.17 5.88 5.56 5.56 11.11 8.33 5.56 6.25 4.55 9.09 0.00 14.29 10.00 0.00 7.69 2.17 K jcn_only_AD D1,RI_chr3R_5065631_5065691,I_chr3R_5065631_5065695,I_chr3R_5065631_5065697 chr3R - chr3R_5065631_5065767;chr3R_5065631_5065691;chr3R_5065631_5065695 chr3R_5065631_5065697 chr3R_5065531_5065630;chr3R_5065768_5065790 23.81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.14 NA NA 23.81 NA NA NA NA NA NA NA NA NA 31.25 K jcn_only_AD noncoding_13497,I_chr3L_19480207_19480774,RE_chr3L_19480325_19480756,I_chr3L_19480345_19480774 chr3L - chr3L_19480207_19480774 chr3L_19480207_19480261 chr3L_19480107_19480206 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA 100.00 100.00 95.00 NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 100.00 K intron_retention flw chrX + chrX_10280070_10280230 chrX_10280069_10280070;chrX_10280230_10280231 chrX_10280035_10280069;chrX_10280231_10280596 100.00 100.00 100.00 100.00 NA NA 100.00 90.91 96.00 NA NA 93.75 NA 100.00 NA 94.74 90.91 NA 100.00 NA NA 90.91 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA 92.31 NA NA NA K intron_retention uri,I_chr2R_20461194_20461274,I_chr2R_20463661_20463716 chr2R + chr2R_20454963_20455014 chr2R_20454962_20454963;chr2R_20455014_20455015 chr2R_20453564_20454962;chr2R_20455015_20455605 0.00 NA NA NA NA NA 0.00 5.00 0.00 NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 NA NA 0.00 14.29 NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 0.00 0.00 0.00 K intron_retention Ptp10D,CEF_chrX_11516219_11517862,I_chrX_11516225_11516345 chrX + chrX_11561013_11561229 chrX_11561012_11561013;chrX_11561229_11561230 chrX_11560731_11561012;chrX_11561230_11561277 2.78 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 30.77 NA NA NA 29.41 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 7.14 NA NA 5.56 0.00 NA 5.56 NA 0.00 NA NA NA NA NA NA 16.67 NA 0.00 NA NA NA NA NA NA NA K intron_retention su(f),I_chrXHet_77570_78035 chrXHet + chrXHet_77570_78035 chrXHet_77569_77570;chrXHet_78035_78036 chrXHet_77470_77569;chrXHet_78036_78135 97.14 100.00 98.08 93.75 93.75 97.44 100.00 97.44 97.89 96.15 96.97 100.00 100.00 95.00 98.44 95.74 97.14 97.14 96.30 94.44 96.55 77.78 98.11 94.23 96.15 98.18 100.00 95.83 97.30 95.00 91.04 92.50 98.00 98.65 96.43 97.14 100.00 92.31 96.61 88.61 97.37 95.65 97.44 100.00 97.78 96.23 97.14 95.06 98.80 92.50 98.08 96.67 96.00 93.33 98.25 97.44 97.73 95.59 K intron_retention didum,I_chr2R_3393005_3393348 chr2R + chr2R_3390534_3390676 chr2R_3390533_3390534;chr2R_3390676_3390677 chr2R_3390307_3390533;chr2R_3390677_3390700 15.38 NA NA 15.38 NA NA NA 23.53 11.76 NA NA 23.53 NA NA NA 15.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor gw,I_chr4_679135_681671,noncoding_20755 chr4 - chr4_682607_683596;chr4_682607_683702 chr4_682607_683578 chr4_682360_682606;chr4_683703_683710 31.66 NA NA 50.00 NA NA NA 22.22 33.33 NA NA NA NA NA NA 30.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 37.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA NA NA K jcn_only_AA B52,F_chr3R_9488762_9491174,E_chr3R_9488770_9491174 chr3R + chr3R_9488127_9488691 chr3R_9488127_9488676 chr3R_9488019_9488126;chr3R_9488692_9488761 0.53 0.64 0.40 0.00 0.38 0.83 0.00 0.36 0.54 0.58 0.00 0.41 1.00 0.00 0.32 0.44 0.00 0.67 0.45 0.30 1.78 0.47 0.29 0.00 1.52 1.22 0.39 0.71 0.76 0.87 1.42 0.00 0.56 0.82 0.81 1.08 0.35 0.49 0.60 0.67 0.68 0.55 0.51 0.39 0.53 0.89 0.34 0.50 0.18 0.58 0.37 0.95 0.00 1.48 0.99 0.88 0.34 0.72 K intron_retention SP2637,Gint3 chr2R - chr2R_14529573_14529636 chr2R_14529572_14529573;chr2R_14529636_14529637 chr2R_14529364_14529572;chr2R_14529637_14529819 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive CG9171,I_chr2L_5771210_5773014,RI_chr2L_5792418_5799117,I_chr2L_5799412_5800043 chr2L - chr2L_5771210_5799117,chr2L_5799273_5800043 chr2L_5771210_5787964,chr2L_5787985_5800043 chr2L_5799118_5799272 chr2L_5787965_5787984 chr2L_5771110_5771209;chr2L_5800044_5800143 7.14 NA NA NA NA NA 0.00 NA 36.36 NA NA NA NA NA NA NA NA 0.00 NA 16.67 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 40.00 NA 14.29 0.00 NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA K intron_retention nej,RI_chrX_9578185_9581011 chrX - chrX_9564637_9564874 chrX_9564636_9564637;chrX_9564874_9564875 chrX_9563143_9564636;chrX_9564875_9566354 0.00 0.00 0.00 12.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 2.17 0.00 3.57 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD BM-40-SPARC,I_chr3R_22696095_22696231,I_chr3R_22696095_22696291,I_chr3R_22696095_22697413 chr3R - chr3R_22696095_22696291;chr3R_22696095_22697413;chr3R_22696095_22696231 chr3R_22696095_22697647 chr3R_22695995_22696094;chr3R_22697648_22697767 99.69 99.61 99.76 99.70 99.69 99.73 99.66 99.77 99.72 99.66 99.82 99.53 99.81 99.74 99.66 99.76 99.60 99.78 99.76 99.68 99.81 99.88 99.48 99.65 99.52 99.77 99.83 99.83 99.30 99.58 99.70 99.36 99.87 99.59 99.62 99.55 99.83 99.73 99.77 99.64 99.40 99.65 99.69 99.81 99.70 99.78 99.68 99.45 99.79 99.74 99.50 99.59 99.83 99.63 99.69 99.62 99.84 99.54 K intron_retention bip2,RI_chr4_481674_487126,RI_chr4_483144_483680,RI_chr4_486609_487126 chr4 - chr4_481147_481199 chr4_481146_481147;chr4_481199_481200 chr4_480829_481146;chr4_481200_481282 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 98.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor smi35A,E_chr2L_14222082_14233578,E_chr2L_14222082_14233893,RI_chr2L_14233579_14233647 chr2L - chr2L_14229537_14233893;chr2L_14229537_14233647 chr2L_14229537_14233578 chr2L_14229532_14229536;chr2L_14233894_14233993 25.00 25.00 16.67 32.00 33.33 27.27 11.11 22.58 12.77 33.33 18.18 28.57 29.63 15.79 20.00 35.71 22.22 42.86 25.00 47.06 22.22 15.79 15.79 14.29 28.57 15.38 31.58 16.67 25.00 NA 13.33 33.33 41.18 35.71 28.57 21.43 40.00 25.00 NA 15.00 NA 17.24 28.57 23.08 NA 30.00 NA 27.78 25.00 10.53 20.00 25.00 NA NA 31.25 NA 20.00 50.00 K alternative_acceptor CG17233,RI_chr3L_20232898_20232962 chr3L - chr3L_20228778_20229533 chr3L_20229429_20229533 chr3L_20229534_20231010;chr3L_20228602_20228777 50.00 40.00 37.50 50.00 35.71 31.58 52.63 50.00 43.40 60.00 25.00 36.96 63.64 50.00 26.92 92.31 60.00 26.32 31.82 36.67 35.71 88.89 40.48 48.48 54.55 40.00 44.00 45.16 57.14 46.67 50.00 68.75 57.14 38.89 58.82 48.15 43.18 41.67 46.34 54.17 76.47 39.02 58.33 52.00 64.52 50.00 50.00 58.62 44.74 61.54 48.48 47.06 50.00 53.33 44.44 51.85 59.09 57.14 K alternative_last_exon mbl,CEI_chr2R_13153717_13238598,I_chr2R_13163569_13203579 chr2R + chr2R_13163569_13183339;chr2R_13163569_13193491 chr2R_13163569_13238598 chr2R_13183340_13186065;chr2R_13193492_13193737 chr2R_13238599_13238769 chr2R_13163469_13163568 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor tna chr3L + chr3L_10866677_10866756 chr3L_10866677_10866744 chr3L_10866574_10866676;chr3L_10866757_10866874 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Aats-ile chr3L + chr3L_22282040_22282103 chr3L_22282039_22282040;chr3L_22282103_22282104 chr3L_22281895_22282039;chr3L_22282104_22283355 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.34 0.00 0.00 0.34 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.35 0.76 0.00 0.00 0.67 0.00 0.00 0.40 0.43 1.14 0.00 1.18 0.00 0.00 1.40 0.00 0.78 0.00 0.00 0.87 0.80 0.00 0.76 0.00 0.00 0.00 0.91 0.00 0.67 1.48 0.00 0.63 0.00 0.00 1.85 0.58 0.00 0.00 0.00 K intron_retention CG4674 chr3R + chr3R_6711810_6719451 chr3R_6711809_6711810;chr3R_6719451_6719452 chr3R_6711349_6711809;chr3R_6719452_6720840 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 6.25 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 K intron_retention bur,I_chr2L_21177679_21178250,I_chr2L_21177960_21179329 chr2L - chr2L_21174976_21175032 chr2L_21174975_21174976;chr2L_21175032_21175033 chr2L_21174191_21174975;chr2L_21175033_21175211 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 4.17 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1599,RI_chr2R_5728855_5728907,I_chr2R_5728977_5729044,I_chr2R_5729744_5729805 chr2R - chr2R_5728855_5728912 chr2R_5728854_5728855;chr2R_5728912_5728913 chr2R_5728755_5728854;chr2R_5728913_5728976 0.00 0.00 0.00 1.40 0.00 0.00 1.24 1.15 0.46 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.21 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG11539 chr3R - chr3R_27440907_27441093 chr3R_27440907_27440963 chr3R_27440838_27440906;chr3R_27441094_27441478 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 90.91 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor ena chr2R + chr2R_15048921_15048980 chr2R_15048921_15048977 chr2R_15048699_15048920;chr2R_15048981_15049098 14.38 11.33 12.50 16.73 14.65 12.50 11.11 11.39 11.63 15.91 13.61 15.01 12.40 14.84 13.79 14.93 14.73 11.32 13.94 12.50 11.05 12.20 15.03 15.86 16.34 13.67 18.22 19.48 13.86 15.51 14.37 15.38 15.84 11.88 16.04 15.05 13.40 14.29 15.27 15.19 14.38 11.94 12.16 16.48 16.36 15.90 12.67 21.58 14.93 16.08 15.42 16.92 14.75 12.35 11.50 13.37 11.71 13.90 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2388436;chrX_2388671_2389073;chrX_2389272_2390808;chrX_2390959_2391350;chrX_2391522_2395659 chrX_2388437_2388670;chrX_2389074_2389271;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2395660_2395759 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.75 0.59 0.00 0.00 4.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 1.12 0.00 1.25 1.96 0.00 0.73 0.00 2.74 0.00 0.00 NA 0.78 0.56 0.00 0.00 0.00 0.00 NA 1.02 0.00 0.00 0.00 K jcn_only_AD Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654157,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15652363_15654272;chrX_15652363_15654157 chrX_15652363_15654499 chrX_15652357_15652362;chrX_15654500_15654599 20.00 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Rho1,I_chr2R_11990455_11992537,RI_chr2R_11991687_11992537 chr2R + chr2R_11990455_11991115 chr2R_11990454_11990455;chr2R_11991115_11991116 chr2R_11990435_11990454;chr2R_11991116_11991279 35.23 30.18 39.93 29.45 31.71 41.42 26.85 29.99 22.83 29.55 29.98 37.51 24.60 36.15 37.50 38.88 25.25 41.63 31.18 49.15 37.63 28.19 37.41 42.52 33.01 43.28 32.50 18.33 28.17 26.55 41.50 35.38 32.35 34.07 39.35 33.95 31.53 35.23 42.41 30.94 36.96 32.93 31.25 42.43 35.80 39.07 43.19 31.64 36.75 31.58 42.67 36.24 36.39 47.12 39.25 35.30 24.74 24.42 K intron_retention Hpr1 chr3R - chr3R_1646069_1646225 chr3R_1646068_1646069;chr3R_1646225_1646226 chr3R_1645782_1646068;chr3R_1646226_1646909 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA gp210,I_chr2R_1653709_1654789,I_chr2R_1655359_1655422 chr2R + chr2R_1655566_1656853 chr2R_1655566_1656847 chr2R_1655423_1655565;chr2R_1656854_1657000 100.00 100.00 98.39 99.28 100.00 97.01 100.00 99.17 99.44 100.00 100.00 100.00 98.97 99.07 99.11 99.54 98.91 100.00 100.00 100.00 100.00 98.53 100.00 98.70 100.00 100.00 100.00 97.06 100.00 98.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.39 100.00 100.00 99.07 100.00 98.86 100.00 98.51 100.00 99.57 100.00 100.00 98.53 100.00 100.00 98.73 100.00 99.04 99.65 K alternative_acceptor CG14290,RI_chr3R_14754008_14754110 chr3R - chr3R_14754008_14754110 chr3R_14754037_14754110 chr3R_14754111_14754179;chr3R_14753942_14754007 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 93.75 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 94.74 100.00 95.45 100.00 100.00 K alternative_acceptor CG2064 chr2R + chr2R_3553522_3553619;chr2R_3553522_3553650 chr2R_3553522_3553627 chr2R_3553444_3553521;chr2R_3553651_3553914 0.61 0.00 0.60 0.99 1.37 0.00 1.12 0.37 0.43 1.18 0.00 0.61 0.00 0.76 0.62 0.81 1.12 0.84 0.00 0.54 0.00 1.75 0.62 0.40 2.37 0.00 0.78 1.27 1.58 0.68 1.25 1.31 0.00 0.00 1.19 0.96 1.99 0.57 0.49 0.90 1.16 0.34 0.00 0.61 1.24 0.80 1.00 1.56 0.33 0.44 0.36 0.00 0.00 0.59 0.00 0.90 0.31 0.00 K alternative_donor RpL36A,I_chr2L_8042614_8042691 chr2L - chr2L_8042614_8042822 chr2L_8042614_8042691 chr2L_8042514_8042613;chr2L_8042823_8042836 0.19 0.09 0.05 0.04 0.04 0.04 0.09 0.03 0.03 0.25 0.03 0.06 0.04 0.04 0.02 0.07 0.04 0.02 0.03 0.03 0.03 1.08 0.68 0.38 0.44 0.03 0.53 1.83 1.52 1.21 0.38 0.30 0.19 0.04 1.38 1.88 0.23 0.29 0.49 0.68 0.67 0.02 0.08 0.96 0.14 1.56 1.00 0.50 0.07 0.15 2.53 0.19 0.62 3.31 0.02 0.22 0.13 0.36 K jcn_only_AD Edem2 chr2L + chr2L_13195378_13195580 chr2L_13195405_13195580 chr2L_13195581_13195679;chr2L_13195133_13195377 90.67 89.23 91.04 88.10 91.53 88.00 89.89 90.11 90.06 100.00 83.08 92.13 94.34 93.10 89.29 94.52 98.59 89.55 90.14 92.03 92.86 93.22 88.89 94.59 89.13 94.59 93.42 93.88 80.77 88.71 84.81 93.33 78.12 91.67 83.64 89.36 91.80 91.89 90.67 96.15 93.18 88.54 92.19 93.90 86.44 88.89 85.71 85.25 94.74 95.83 87.88 88.89 84.91 93.62 87.65 90.62 92.31 92.16 K intron_retention CG11247,I_chr3L_21718596_21718659 chr3L - chr3L_21721474_21721550 chr3L_21721473_21721474;chr3L_21721550_21721551 chr3L_21721387_21721473;chr3L_21721551_21721574 100.00 100.00 95.24 96.30 100.00 100.00 96.77 100.00 97.62 90.00 94.12 100.00 100.00 100.00 96.15 96.77 100.00 95.24 96.15 97.44 100.00 100.00 100.00 100.00 95.24 100.00 100.00 95.00 100.00 100.00 96.97 100.00 100.00 100.00 94.74 100.00 100.00 100.00 96.67 100.00 100.00 97.22 100.00 94.74 100.00 100.00 100.00 94.12 97.50 100.00 100.00 100.00 93.75 92.31 100.00 92.31 100.00 93.33 K jcn_only_AA Zyx102EF,I_chr4_1078380_1078835,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1078666_1078835;chr4_1078644_1078835;chr4_1078782_1078835 chr4_1078778_1078835 chr4_1078836_1078848;chr4_1078433_1078643 20.00 NA NA 25.00 NA NA 20.00 21.05 16.00 NA NA 9.52 NA NA NA 22.73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 18.18 NA NA 24.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG5938,EI_chr3R_23100734_23100898,RI_chr3R_23101686_23102014 chr3R + chr3R_23100734_23101112 chr3R_23100734_23100898 chr3R_23100634_23100733;chr3R_23101113_23101275 0.00 0.00 0.00 0.00 2.70 0.00 1.16 1.03 0.00 NA 3.12 1.54 0.00 0.00 0.00 0.00 2.44 0.00 1.85 1.18 0.00 4.76 0.00 0.00 2.17 0.00 0.00 0.00 3.39 0.00 0.00 0.00 2.33 0.00 0.00 0.00 1.89 0.00 1.33 3.51 0.00 0.00 4.88 2.17 2.56 0.00 1.92 2.38 0.00 2.08 2.90 3.03 0.00 0.00 2.67 1.56 0.00 0.00 K alternative_last_exon Gmap,I_chrX_15400854_15401194,I_chrX_15402291_15403750 chrX + chrX_15401627_15403750 chrX_15401627_15401744 chrX_15403751_15404026 chrX_15401745_15401813 chrX_15401423_15401626 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 1.28 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.89 0.00 0.00 0.00 1.04 0.00 0.00 0.93 0.00 1.89 0.00 0.99 0.00 0.00 0.00 0.00 0.00 K intron_retention CG40263,F_chr2RHet_1265687_1293040,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1324541_1335781 chr2RHet_1324540_1324541;chr2RHet_1335781_1335782 chr2RHet_1324446_1324540;chr2RHet_1335782_1335833 0.00 0.00 0.00 6.67 0.00 NA 2.38 0.00 1.25 NA NA 0.00 NA 0.00 0.00 2.70 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 3.64 NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA K intron_retention Tm1,I_chr3R_11120969_11125831,I_chr3R_11121267_11122312,I_chr3R_11121267_11124998,RI_chr3R_11125070_11125831,I_chr3R_11125070_11126469 chr3R + chr3R_11121267_11125831 chr3R_11121266_11121267;chr3R_11125831_11125832 chr3R_11121167_11121266;chr3R_11125832_11125902 2.94 2.20 0.00 8.39 3.28 1.47 6.19 4.67 2.88 0.00 5.26 4.03 3.61 5.41 4.88 4.27 4.55 4.76 1.80 2.48 1.33 0.00 3.17 0.99 5.77 6.38 9.64 16.67 3.12 2.56 2.73 5.77 3.26 5.52 1.96 2.94 1.49 2.27 5.56 2.73 4.62 4.85 2.60 2.41 2.63 1.89 2.08 1.80 5.03 4.65 3.39 0.00 0.00 2.78 0.76 1.43 4.60 1.98 K jcn_only_AD CREF_chr3R_5589662_5589762,CG8481 chr3R + chr3R_5594185_5594466;chr3R_5594297_5594466 chr3R_5593863_5594466 chr3R_5594467_5594493;chr3R_5593583_5593862 47.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor Treh,I_chr2R_16972565_16972702,I_chr2R_16975359_16975442,RI_chr2R_16975359_16975842,I_chr2R_16975364_16975842 chr2R + chr2R_16975359_16975442 chr2R_16975364_16975442 chr2R_16975443_16975450;chr2R_16975286_16975358 100.00 100.00 100.00 98.44 100.00 100.00 97.37 100.00 100.00 96.67 100.00 98.04 100.00 100.00 100.00 97.14 100.00 96.55 100.00 100.00 96.55 100.00 100.00 100.00 95.83 96.43 100.00 100.00 100.00 96.30 100.00 100.00 96.97 97.96 100.00 96.43 100.00 96.55 100.00 98.48 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 97.06 97.96 100.00 100.00 100.00 100.00 100.00 97.44 100.00 N jcn_only_AD CG9339,RE_chr2L_20903555_20916904,I_chr2L_20903560_20918638,I_chr2L_20922613_20922685 chr2L - chr2L_20917121_20918798;chr2L_20917121_20918638 chr2L_20917121_20918093 chr2L_20916905_20917120;chr2L_20918799_20918888 26.53 NA NA 0.00 NA NA NA NA 28.89 NA NA 28.57 NA NA NA 0.00 NA NA 0.00 26.53 NA NA NA NA NA NA NA NA NA 38.46 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 K jcn_only_AD Myo95E,F_chr3R_19985049_19985112,F_chr3R_19985127_19985197 chr3R - chr3R_19985049_19985197 chr3R_19985049_19985112 chr3R_19985027_19985048;chr3R_19985198_19985212 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor cv-c,RI_chr3R_10258928_10265129,RI_chr3R_10301040_10306363,RI_chr3R_10306635_10307255 chr3R - chr3R_10236210_10242155 chr3R_10236231_10242155 chr3R_10242156_10242755;chr3R_10235539_10236209 0.00 2.04 0.00 1.92 0.00 0.00 0.00 1.82 1.11 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 1.06 0.00 2.38 3.70 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.15 2.38 2.13 0.00 0.00 1.22 0.00 NA 1.15 2.78 0.00 NA 0.00 0.00 0.00 1.19 5.88 0.00 0.00 0.00 0.00 1.82 3.85 0.00 NA K intron_retention zfh1 chr3R + chr3R_26595505_26599294 chr3R_26595504_26595505;chr3R_26599294_26599295 chr3R_26595436_26595504;chr3R_26599295_26599458 41.67 NA NA 56.25 NA NA NA 63.64 35.00 NA NA 41.67 NA NA 46.15 NA NA NA NA 24.14 NA 50.57 NA NA NA NA NA 77.78 NA NA NA NA 40.00 33.33 NA NA NA NA NA 33.33 NA 40.00 NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA NA K intron_retention SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_17001356_17003999 chr3R_17001355_17001356;chr3R_17003999_17004000 chr3R_17001253_17001355;chr3R_17004000_17004121 4.17 0.00 8.33 10.53 4.35 0.00 17.24 6.25 8.77 10.26 0.00 10.34 0.00 4.00 6.67 0.00 11.76 7.14 11.76 9.09 11.11 3.45 3.03 2.86 6.25 15.00 4.55 0.00 5.88 0.00 5.13 0.00 2.78 10.71 3.57 5.26 3.37 3.39 2.35 3.03 0.00 6.00 6.67 0.00 0.00 2.70 5.71 0.00 6.82 4.17 3.39 5.26 4.44 0.00 7.41 0.00 0.00 0.00 K jcn_only_AD kar,I_chr3R_8510245_8510617,I_chr3R_8510258_8513437,I_chr3R_8514177_8514930 chr3R - chr3R_8510245_8513437;chr3R_8510245_8510655 chr3R_8510245_8510617 chr3R_8510234_8510244;chr3R_8513438_8513461 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG4858,I_chr3L_20520381_20520577,EI_chr3L_20520642_20520692 chr3L + chr3L_20520642_20520692;chr3L_20520381_20520692 chr3L_20520377_20520692 chr3L_20520693_20520792;chr3L_20520281_20520376 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 1.49 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 K jcn_only_AD Scamp,I_chrX_15342614_15342891,I_chrX_15343542_15343655 chrX - chrX_15343542_15343737 chrX_15343542_15343655 chrX_15343442_15343541;chrX_15343738_15343755 0.00 0.00 1.91 0.65 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.72 0.66 0.00 0.00 0.70 0.00 0.00 0.61 1.39 0.85 0.00 0.00 0.00 0.75 0.00 0.92 0.00 0.78 0.00 1.67 0.00 0.85 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 K alternative_acceptor CG15609,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12900214_12900789 chr2R_12900280_12900789 chr2R_12900790_12900889;chr2R_12899457_12900213 100.00 100.00 100.00 96.15 100.00 100.00 75.00 98.36 98.81 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 98.61 97.06 96.00 98.18 100.00 100.00 96.43 100.00 100.00 94.74 100.00 100.00 100.00 95.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 98.46 96.77 100.00 100.00 100.00 100.00 100.00 98.04 95.45 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette CG11009,I_chr3L_12844823_12845526,I_chr3L_12845441_12845526 chr3L + chr3L_12845378_12845715;chr3L_12844823_12845715 chr3L_12845378_12845526,chr3L_12844823_12845526;chr3L_12845622_12845715 chr3L_12845527_12845621 chr3L_12844723_12844822;chr3L_12845716_12845816 33.60 29.76 41.67 62.75 29.41 31.94 9.01 31.01 30.11 20.00 36.99 47.92 53.57 26.25 22.64 39.18 42.86 30.14 40.58 32.95 43.08 60.59 26.19 34.55 24.72 16.35 38.46 45.28 16.81 37.27 47.58 47.01 58.71 37.60 38.75 48.57 25.96 19.51 27.72 34.10 42.07 33.33 32.26 31.25 46.58 40.98 41.79 42.24 30.61 43.35 33.60 24.73 19.18 38.71 32.69 31.25 25.42 30.95 K alternative_acceptor Adf1,CG15908_CG9410 chr2R + chr2R_2549942_2550129 chr2R_2549942_2550073 chr2R_2549797_2549941;chr2R_2550130_2550262 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 96.97 94.12 100.00 100.00 93.33 100.00 100.00 100.00 94.12 100.00 97.30 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 96.43 100.00 100.00 95.45 100.00 100.00 100.00 100.00 95.00 94.74 100.00 100.00 100.00 100.00 100.00 K intron_retention ced-6,I_chr2R_5324717_5324924,I_chr2R_5328640_5328696,I_chr2R_5331785_5332177 chr2R - chr2R_5325238_5328696 chr2R_5325237_5325238;chr2R_5328696_5328697 chr2R_5324931_5325237;chr2R_5328697_5328796 2.15 0.00 2.20 4.59 1.18 0.00 4.88 2.63 2.84 0.00 0.00 3.83 3.85 5.62 2.34 5.45 2.15 2.50 2.08 2.92 0.00 8.64 4.21 0.00 1.92 4.08 3.96 3.28 1.82 0.00 3.03 4.44 3.33 1.38 0.00 1.67 0.00 1.20 0.00 5.05 2.13 2.81 2.60 1.85 2.94 0.00 2.60 0.00 1.08 1.83 1.05 0.00 0.00 0.00 4.00 0.00 2.60 3.77 K jcn_only_AD CG1516,I_chr2R_5743716_5743899,I_chr2R_5746990_5747874,RI_chr2R_5752988_5757801 chr2R - chr2R_5747958_5748079 chr2R_5747958_5748029 chr2R_5747875_5747957;chr2R_5748080_5748239 100.00 100.00 100.00 100.00 NA NA NA 97.62 100.00 100.00 NA 93.33 NA 100.00 100.00 100.00 100.00 92.00 100.00 97.44 NA 100.00 95.00 NA NA NA 100.00 NA NA NA 100.00 NA 100.00 97.78 96.00 NA NA NA NA 100.00 NA 97.96 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA 92.31 NA NA NA K alternative_acceptor d4 chr2R + chr2R_1182569_1182634 chr2R_1182569_1182620 chr2R_1182302_1182568;chr2R_1182635_1183461 100.00 96.67 100.00 97.92 100.00 95.00 97.30 100.00 98.28 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 98.36 96.00 100.00 97.06 97.37 100.00 100.00 95.12 100.00 96.30 96.55 95.24 96.67 97.92 100.00 95.45 100.00 94.87 96.15 97.37 100.00 96.67 100.00 100.00 95.83 100.00 100.00 100.00 100.00 97.73 100.00 96.88 100.00 100.00 100.00 100.00 100.00 97.87 100.00 K jcn_only_AD Gpo-1,I_chr2R_11747621_11747699,EI_chr2R_11747445_11747699,I_chr2R_11749758_11750187,I_chr2R_11756325_11756380 chr2R - chr2R_11748259_11749386 chr2R_11748259_11749143 chr2R_11748106_11748258;chr2R_11749387_11749428 47.81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 38.10 NA NA NA 55.00 NA NA NA 48.00 NA NA 40.91 47.62 NA NA 70.00 NA NA NA NA NA NA NA K intron_retention I_chr2R_7778750_7781059,I_chr2R_7778971_7781059,Ef1alpha48D,I_chr2R_7779690_7780997,I_chr2R_7779690_7781065,I_chr2R_7779690_7783075,I_chr2R_7779719_7781059,I_chr2R_7779813_7781059,I_chr2R_7779892_7781059,EF_chr2R_7779896_7781065,I_chr2R_7780542_7781059,I_chr2R_7780580_7781059,snoRNA:Me28S-A1322,I_chr2R_7780840_7781059,I_chr2R_7780877_7781059,RI_chr2R_7781135_7783075 chr2R + chr2R_7779690_7781065 chr2R_7779689_7779690;chr2R_7781065_7781066 chr2R_7779622_7779689;chr2R_7781066_7781097 98.04 97.33 98.21 95.00 97.22 97.78 97.32 96.15 95.42 100.00 97.78 97.50 94.83 95.59 97.18 96.80 97.50 92.19 85.94 99.00 98.08 99.71 99.54 98.81 94.29 93.75 98.28 99.67 98.36 100.00 95.83 98.11 98.53 94.74 98.99 98.91 96.04 98.04 97.35 99.16 100.00 96.80 100.00 99.36 97.73 99.50 99.10 100.00 95.39 100.00 98.37 95.52 99.13 98.93 98.72 97.28 98.53 98.00 K alternative_acceptor CG14997 chr3L + chr3L_4240892_4240985 chr3L_4240892_4240951 chr3L_4240786_4240891;chr3L_4240986_4241176 100.00 100.00 87.50 93.33 NA 100.00 88.89 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 94.44 100.00 100.00 87.50 100.00 NA 87.50 85.71 75.00 100.00 100.00 100.00 NA 90.00 94.44 100.00 93.33 100.00 88.89 91.67 NA 100.00 100.00 100.00 94.74 100.00 94.44 92.86 100.00 87.50 100.00 100.00 100.00 100.00 95.00 100.00 K alternative_donor SmG chrX - chrX_16534064_16534128 chrX_16534064_16534125 chrX_16533995_16534063;chrX_16534129_16534194 99.27 98.82 99.47 99.51 98.77 99.39 99.34 98.76 99.23 98.65 98.70 99.00 100.00 99.17 99.40 100.00 98.68 99.15 99.19 99.25 98.95 100.00 99.48 98.87 99.12 99.27 100.00 98.63 100.00 98.39 99.31 98.85 99.66 99.61 99.26 99.44 99.13 99.15 98.87 99.42 99.61 99.71 100.00 99.08 99.77 98.99 99.14 98.28 99.70 98.05 100.00 98.92 99.51 99.68 99.38 99.54 99.45 99.66 K intron_retention CG16718,EI_chr3R_15465136_15466705 chr3R - chr3R_15465136_15467799 chr3R_15465135_15465136;chr3R_15467799_15467800 chr3R_15465036_15465135;chr3R_15467800_15468408 0.00 0.00 0.00 0.00 NA NA 0.00 6.67 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.03 0.00 6.25 10.00 0.00 NA NA 9.09 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.59 0.00 NA 0.00 5.88 0.00 NA 0.00 NA NA 0.00 N multi_cassette Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16107821_16110644 chr3L_16107821_16108768;chr3L_16108931_16109131;chr3L_16109342_16110644 chr3L_16108769_16108930;chr3L_16109132_16109341 chr3L_16107721_16107820;chr3L_16110645_16111208 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD EloA chr3R + chr3R_19080028_19080090 chr3R_19080032_19080090 chr3R_19080091_19080790;chr3R_19079740_19080027 100.00 98.68 100.00 100.00 100.00 100.00 100.00 98.73 99.08 100.00 100.00 100.00 100.00 100.00 98.68 100.00 97.56 100.00 100.00 100.00 100.00 97.47 100.00 100.00 99.00 100.00 100.00 98.94 100.00 100.00 100.00 100.00 98.63 100.00 100.00 98.70 100.00 100.00 100.00 100.00 100.00 99.24 100.00 98.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 K alternative_acceptor CG5991 chr3R + chr3R_19876703_19877411;chr3R_19876703_19877421 chr3R_19876703_19877425 chr3R_19876688_19876702;chr3R_19877426_19877477 0.00 NA NA 0.00 NA NA 10.00 6.25 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 14.29 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 10.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Rab1,I_chr3R_17093463_17094644,I_chr3R_17094214_17094492,I_chr3R_17099005_17099062 chr3R - chr3R_17093463_17094492 chr3R_17094214_17094492 chr3R_17094493_17094592;chr3R_17093363_17093462 3.44 2.82 2.20 1.79 1.57 2.95 3.26 2.96 2.35 5.49 2.12 4.06 1.47 2.15 1.99 3.28 1.72 2.67 1.80 3.36 1.96 9.80 6.01 4.42 4.88 2.01 3.44 5.97 6.15 4.41 2.14 4.62 6.47 2.23 3.82 3.08 5.08 3.28 4.79 4.10 4.65 2.85 2.46 3.69 6.12 5.52 4.00 8.40 3.11 4.62 3.85 4.48 4.55 3.70 2.14 3.47 3.27 4.26 K jcn_only_AA CG1161,RI_chr3R_1181273_1181459 chr3R + chr3R_1181273_1181555;chr3R_1181273_1181459 chr3R_1181273_1181515 chr3R_1181173_1181272;chr3R_1181556_1181559 0.00 0.31 0.45 0.68 0.00 0.00 2.44 0.33 0.20 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.70 0.00 0.00 0.83 2.86 0.38 0.46 1.39 0.00 0.56 0.00 0.00 1.17 0.65 0.60 0.95 0.00 0.00 0.80 1.20 0.49 0.89 0.00 1.65 0.42 0.32 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 1.11 0.00 0.00 K intron_retention dlg1,I_chrX_11298230_11299306 chrX + chrX_11283815_11284263 chrX_11283814_11283815;chrX_11284263_11284264 chrX_11283738_11283814;chrX_11284264_11284573 80.00 82.05 86.11 88.52 87.50 93.75 75.86 81.16 79.45 68.18 84.62 78.82 82.35 82.93 81.40 80.95 84.21 81.25 83.72 82.11 95.45 70.21 81.43 74.55 68.09 64.52 89.09 65.91 65.91 80.00 79.25 65.00 82.67 83.56 69.23 71.43 80.00 72.22 82.05 69.37 68.97 81.01 82.35 73.91 60.00 69.23 63.16 64.10 83.53 80.00 80.88 69.57 76.19 76.92 84.44 73.08 77.27 78.38 K intron_retention CG5924 chr2L - chr2L_9893070_9893127 chr2L_9893069_9893070;chr2L_9893127_9893128 chr2L_9892632_9893069;chr2L_9893128_9893424 0.00 NA 0.00 NA NA NA 0.00 0.00 3.45 NA NA 0.00 NA NA 0.00 NA NA NA NA 10.53 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K intron_retention RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12928330_12928400 chr2R_12928329_12928330;chr2R_12928400_12928401 chr2R_12927893_12928329;chr2R_12928401_12928992 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.92 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3R_22696095_22697413,Rb97D chr3R - chr3R_22701126_22701265 chr3R_22701125_22701126;chr3R_22701265_22701266 chr3R_22700896_22701125;chr3R_22701266_22701426 2.47 0.00 0.00 2.90 2.70 0.00 2.00 4.23 4.60 1.79 14.29 1.94 2.38 3.64 0.00 0.00 6.67 6.98 4.17 4.88 0.00 3.85 5.13 3.57 0.00 0.00 14.29 16.13 0.00 4.76 4.35 0.00 0.00 3.39 0.00 0.00 5.36 5.00 5.63 1.33 NA 2.13 0.00 2.56 0.00 0.00 0.00 0.00 5.06 2.70 4.62 3.85 0.00 0.00 3.12 5.26 0.00 0.00 K alternative_donor exba,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1425813_1426009;chr3R_1425813_1426209 chr3R_1425813_1426125 chr3R_1425790_1425812;chr3R_1426210_1426225 43.75 NA 41.67 NA NA NA 41.18 50.00 46.67 66.67 33.33 39.13 37.50 30.77 NA 43.75 NA 40.00 26.67 50.00 28.57 71.43 35.71 61.54 NA 37.50 NA 42.86 45.45 33.33 50.00 46.15 53.85 48.28 33.33 42.86 16.67 50.00 NA 52.63 NA 54.17 50.00 40.00 65.00 47.62 66.67 54.17 43.33 36.36 NA 30.00 20.00 NA NA 62.50 NA 63.64 K intron_retention CG1021,RI_chr3R_2217711_2231463,I_chr3R_2218682_2231463,I_chr3R_2219634_2231390,I_chr3R_2231383_2231463 chr3R - chr3R_2216029_2216110 chr3R_2216028_2216029;chr3R_2216110_2216111 chr3R_2215924_2216028;chr3R_2216111_2216231 0.00 0.00 0.00 1.72 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 0.00 0.00 0.00 13.79 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 1.61 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17272 chr3R - chr3R_16649590_16649656 chr3R_16649589_16649590;chr3R_16649656_16649657 chr3R_16649525_16649589;chr3R_16649657_16649687 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 11.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N cassette Cnx99A,I_chr3R_25142581_25142644,I_chr3R_25144335_25145173,I_chr3R_25145243_25145309,I_chr3R_25145256_25145426 chr3R - chr3R_25141892_25142225;chr3R_25141892_25142441 chr3R_25141892_25141958;chr3R_25142088_25142225,chr3R_25142088_25142441 chr3R_25141959_25142087 chr3R_25141667_25141891;chr3R_25142442_25142582 100.00 100.00 100.00 99.79 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.63 100.00 100.00 99.79 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG10433 chr2R - chr2R_17493699_17493972 chr2R_17493866_17493972 chr2R_17493973_17494122;chr2R_17493181_17493698 3.70 2.48 3.02 4.75 2.05 1.84 6.64 3.75 3.97 3.95 3.91 2.91 4.53 3.03 3.14 3.46 3.17 4.23 13.03 2.06 2.06 5.24 4.02 4.20 3.97 3.70 5.06 13.94 6.39 2.97 2.33 3.15 1.91 2.68 4.26 5.66 4.39 3.89 4.02 4.45 4.21 3.23 3.60 5.12 2.40 2.92 3.26 3.89 2.83 7.75 4.52 4.75 1.61 3.45 2.54 3.26 2.57 1.73 K intron_retention exba,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1425813_1426125 chr3R_1425812_1425813;chr3R_1426125_1426126 chr3R_1425790_1425812;chr3R_1426126_1426166 97.56 100.00 90.91 100.00 100.00 100.00 96.88 97.56 98.04 92.86 95.65 98.15 95.00 96.67 100.00 95.38 100.00 96.77 100.00 97.06 100.00 95.65 96.88 96.15 100.00 96.15 100.00 100.00 100.00 95.00 97.22 96.55 96.88 98.11 95.24 96.55 100.00 91.67 100.00 98.31 100.00 97.96 87.50 97.56 91.67 95.45 95.00 97.96 93.55 96.30 100.00 100.00 100.00 100.00 100.00 92.00 100.00 94.44 N mutually_exclusive CG17724,Kdm4B,seq chr2R - chr2R_9066519_9068494,chr2R_9070740_9072281 chr2R_9066519_9067092,chr2R_9067616_9072281 chr2R_9068495_9070739 chr2R_9067093_9067615 chr2R_9063672_9066518;chr2R_9072282_9072680 50.00 50.00 63.64 77.78 25.00 57.14 60.00 42.86 36.84 40.00 25.00 35.14 86.67 57.14 71.43 55.56 60.00 50.00 71.43 75.00 18.75 4.88 63.64 55.56 55.56 50.00 60.00 28.57 5.56 50.00 76.92 0.00 20.00 34.62 57.14 66.67 30.77 44.44 40.00 15.79 33.33 32.50 60.00 50.00 25.00 50.00 40.00 20.00 25.93 66.67 60.00 45.45 33.33 60.00 75.00 40.00 50.00 27.27 K intron_retention Tpi chr3R - chr3R_25959817_25959972 chr3R_25959816_25959817;chr3R_25959972_25959973 chr3R_25959232_25959816;chr3R_25959973_25960005 20.49 11.86 10.20 7.74 4.69 10.92 19.64 8.94 8.46 25.00 5.11 10.08 12.50 7.69 13.64 9.77 4.10 7.89 8.33 9.80 7.35 43.50 43.94 64.29 76.74 16.20 68.32 50.32 71.30 26.76 8.11 20.49 43.85 11.69 29.41 36.36 21.54 31.82 28.57 27.87 62.50 8.71 5.33 20.59 25.00 32.12 19.40 36.13 12.26 25.33 33.33 33.33 21.62 21.21 7.91 27.69 20.29 33.60 N intron_retention CG3523 chr2L + chr2L_3059325_3059604 chr2L_3059324_3059325;chr2L_3059604_3059605 chr2L_3059307_3059324;chr2L_3059605_3060142 100.00 NA NA NA NA NA NA NA 53.85 NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 53.33 NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA K alternative_donor CG5594,CG2812 chr2R + chr2R_19810102_19810163 chr2R_19810105_19810163 chr2R_19810164_19810379;chr2R_19809915_19810101 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6523,Tap42,CG31855 chr2L + chr2L_13367068_13367130 chr2L_13367067_13367068;chr2L_13367130_13367131 chr2L_13366805_13367067;chr2L_13367131_13367503 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.31 0.00 1.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.65 0.00 0.46 2.50 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 K alternative_donor glob1,I_chr3R_11723738_11727000 chr3R - chr3R_11723738_11726929 chr3R_11723738_11726731 chr3R_11723638_11723737;chr3R_11726930_11727083 91.67 85.71 88.89 66.67 92.31 91.67 91.30 84.62 84.44 91.67 84.62 93.10 100.00 85.71 87.50 89.47 94.12 85.71 92.00 90.32 100.00 61.54 94.74 90.00 100.00 94.74 75.00 NA 100.00 91.67 96.00 80.00 94.12 93.33 93.75 90.00 91.67 91.67 91.67 95.83 91.67 87.80 80.95 78.95 85.71 95.83 92.00 86.36 97.56 83.33 90.00 93.33 92.86 88.24 92.31 100.00 95.45 93.10 K intron_retention Rho1,RI_chr2R_11991687_11992537 chr2R + chr2R_11992688_11993221 chr2R_11992687_11992688;chr2R_11993221_11993222 chr2R_11992538_11992687;chr2R_11993222_11993302 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.17 0.00 0.00 0.11 0.00 0.00 0.19 0.10 0.00 0.00 0.00 0.17 0.00 0.61 0.00 0.00 0.00 0.00 0.48 2.06 1.33 0.31 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG33298 chr2L + chr2L_9519077_9519146 chr2L_9519076_9519077;chr2L_9519146_9519147 chr2L_9518876_9519076;chr2L_9519147_9519334 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 1.23 0.00 0.00 2.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 K intron_retention spz chr3R - chr3R_22892176_22892329 chr3R_22892175_22892176;chr3R_22892329_22892330 chr3R_22892041_22892175;chr3R_22892330_22892387 35.90 33.73 40.87 48.62 41.86 37.01 50.56 33.48 39.93 28.05 44.59 38.65 41.38 39.53 37.97 40.74 38.04 48.45 41.46 35.90 43.90 21.95 23.72 29.67 36.73 50.00 23.98 22.67 37.14 36.36 40.00 30.56 36.78 34.48 28.85 28.23 26.85 34.45 28.07 30.89 43.55 37.14 46.74 27.91 18.91 32.67 30.63 28.43 39.02 27.56 29.89 33.72 27.72 37.59 42.59 32.41 22.19 25.68 K intron_retention CG30035 chr2R + chr2R_7557707_7558534 chr2R_7557706_7557707;chr2R_7558534_7558535 chr2R_7556772_7557706;chr2R_7558535_7558685 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 1.45 2.53 0.00 0.00 1.39 0.00 0.00 2.82 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD Sr-CIV,F_chr2L_3528916_3528977 chr2L - chr2L_3523673_3523752 chr2L_3523673_3523748 chr2L_3523144_3523672;chr2L_3523753_3524105 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 8.62 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA K jcn_only_AA CG11299,noncoding_8970,I_chr2R_19619053_19619186 chr2R + chr2R_19601598_19602203 chr2R_19601598_19602188 chr2R_19601444_19601597;chr2R_19602204_19602422 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD cyp33,RI_chr2R_13433439_13433498,I_chr2R_13433672_13433749 chr2R + chr2R_13433439_13433498 chr2R_13433443_13433498 chr2R_13433499_13433598;chr2R_13433339_13433438 99.03 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.92 88.89 94.59 100.00 100.00 100.00 98.33 100.00 94.12 100.00 100.00 96.34 97.30 97.14 95.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 96.88 98.51 100.00 100.00 97.73 97.87 96.15 98.46 100.00 100.00 100.00 97.37 100.00 98.90 100.00 98.44 99.02 98.59 98.25 100.00 96.97 96.36 93.02 98.25 98.68 98.84 99.03 K intron_retention CG11376,I_chr2L_100704_100835 chr2L + chr2L_100704_100761 chr2L_100703_100704;chr2L_100761_100762 chr2L_100604_100703;chr2L_100762_100942 0.00 NA NA 8.70 NA NA 0.00 3.85 6.90 NA NA 0.00 0.00 NA 0.00 9.68 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA 11.11 NA NA 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K cassette Nhe3,I_chr2L_6680525_6680670 chr2L - chr2L_6680543_6680946;chr2L_6680525_6680946 chr2L_6680543_6680670,chr2L_6680525_6680670;chr2L_6680707_6680946 chr2L_6680671_6680706 chr2L_6680425_6680524;chr2L_6680947_6680998 0.00 0.00 0.00 7.50 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 2.70 0.00 0.00 0.00 0.00 1.52 0.00 1.98 0.00 2.38 0.00 0.00 2.50 5.56 2.13 0.00 0.00 0.00 1.79 1.92 3.33 5.00 2.08 2.56 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 4.44 2.13 3.45 0.00 0.00 0.00 3.23 0.00 0.00 K intron_retention CG5080,I_chr2L_1162147_1162200,I_chr2L_1162147_1163759,I_chr2L_1162839_1162999,I_chr2L_1162951_1162999,I_chr2L_1163280_1163759,I_chr2L_1163629_1163759,I_chr2L_1163632_1163759 chr2L - chr2L_1162147_1162999 chr2L_1162146_1162147;chr2L_1162999_1163000 chr2L_1162047_1162146;chr2L_1163000_1163099 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 1.69 6.12 2.13 5.26 0.00 0.00 2.78 0.00 0.00 5.48 0.00 0.59 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 2.53 0.00 0.00 3.45 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 K intron_retention CG3091,I_chrX_2147635_2147990 chrX - chrX_2147644_2147990 chrX_2147643_2147644;chrX_2147990_2147991 chrX_2147484_2147643;chrX_2147991_2148090 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 2.92 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention shot,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9753001_9753953 chr2R_9753000_9753001;chr2R_9753953_9753954 chr2R_9752056_9753000;chr2R_9753954_9754137 29.55 NA NA NA NA NA NA NA NA 4.55 NA NA NA NA NA NA NA NA NA 54.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG31278,noncoding_15893,RI_chr3R_6533509_6533568 chr3R - chr3R_6533509_6533568 chr3R_6533508_6533509;chr3R_6533568_6533569 chr3R_6533409_6533508;chr3R_6533569_6533668 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RpL39,I_chr2R_19949515_19949720 chr2R - chr2R_19949516_19949720 chr2R_19949515_19949516;chr2R_19949720_19949721 chr2R_19949185_19949515;chr2R_19949721_19949820 0.00 0.03 0.02 0.03 0.00 0.00 0.01 0.02 0.03 0.00 0.03 0.01 0.00 0.03 0.00 0.02 0.06 0.00 0.02 0.01 0.01 0.00 0.02 0.00 0.00 0.00 0.13 0.39 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.23 0.00 0.00 0.02 0.00 0.03 0.00 0.00 0.00 0.05 0.00 0.00 0.03 0.05 0.04 0.00 0.00 0.00 0.01 0.02 0.03 0.00 K alternative_donor TSG101 chr3L + chr3L_16836026_16836202 chr3L_16836133_16836202 chr3L_16836203_16836333;chr3L_16835892_16836025 90.48 92.86 91.49 92.31 85.71 88.89 94.74 88.17 93.20 75.00 89.19 97.33 86.96 91.67 93.33 91.55 92.86 90.48 88.89 90.74 87.18 89.47 84.78 97.37 85.71 83.67 87.76 89.66 80.00 81.48 66.13 86.21 95.12 96.77 81.25 65.00 91.30 92.59 84.78 93.10 88.89 92.11 96.67 88.37 89.66 97.14 100.00 82.76 98.53 91.11 90.00 100.00 91.18 96.00 92.00 90.48 82.61 89.36 K intron_retention CG14619,RI_chrX_21860097_21868647,I_chrX_21865109_21865522,I_chrX_21869837_21869915 chrX + chrX_21867359_21867984 chrX_21867358_21867359;chrX_21867984_21867985 chrX_21867326_21867358;chrX_21867985_21867995 68.34 NA NA 75.00 NA NA NA 88.89 58.82 NA NA 77.78 NA NA NA NA NA NA NA 78.26 NA NA NA NA NA NA NA NA NA 70.00 NA NA 47.06 NA NA NA 46.67 NA 63.64 NA NA 66.67 NA NA NA NA NA NA 63.64 NA 75.00 NA NA NA NA NA NA NA K alternative_acceptor CG8777,RI_chr2R_4989921_4989993,Vang chr2R + chr2R_4989921_4989993 chr2R_4989921_4989980 chr2R_4989821_4989920;chr2R_4989994_4990093 100.00 90.00 100.00 93.33 NA 87.50 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 88.89 92.31 100.00 96.88 100.00 100.00 100.00 90.00 100.00 NA 100.00 NA NA 100.00 92.86 NA NA 95.24 NA 100.00 100.00 100.00 91.67 100.00 NA 100.00 NA 91.67 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor smi35A,I_chr2L_14197568_14197656,I_chr2L_14197587_14197656,E_chr2L_14222082_14233893,RI_chr2L_14233579_14233647 chr2L - chr2L_14197587_14197656;chr2L_14197294_14197656 chr2L_14197568_14197656 chr2L_14197657_14197756;chr2L_14196927_14197293 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 1.30 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14414,I_chrX_14474880_14474927 chrX + chrX_14474711_14474772 chrX_14474710_14474711;chrX_14474772_14474773 chrX_14474630_14474710;chrX_14474773_14474879 58.12 63.64 NA NA NA NA NA NA NA NA NA 88.89 NA NA 45.45 NA NA NA NA 63.64 NA 59.09 43.75 47.06 68.75 81.82 NA NA 83.33 NA 76.92 77.78 NA NA NA NA 47.06 57.14 61.54 33.33 77.78 55.00 NA NA 29.41 NA NA NA 69.23 53.33 53.85 NA 60.00 50.00 NA 46.15 40.00 NA K cassette nonA,I_chrX_16256088_16259237,I_chrX_16265109_16265346 chrX + chrX_16256088_16259237 chrX_16256088_16257390;chrX_16258664_16259237 chrX_16257391_16258663 chrX_16255988_16256087;chrX_16259238_16259337 100.00 100.00 100.00 98.89 100.00 100.00 98.78 100.00 99.42 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 99.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.17 99.21 100.00 99.34 100.00 98.46 98.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG15118,I_chr2R_15024324_15024455 chr2R - chr2R_15021937_15022387 chr2R_15022232_15022387 chr2R_15022388_15023130;chr2R_15021232_15021936 2.83 1.92 4.88 3.33 0.00 2.70 12.77 3.57 3.12 3.33 2.27 10.29 0.00 2.56 4.35 2.08 0.00 0.00 2.56 3.19 0.00 5.88 4.00 3.66 2.44 3.23 3.77 8.00 2.50 1.89 1.92 0.00 2.83 4.17 4.08 1.72 3.12 2.50 3.33 2.50 3.66 3.49 0.00 3.51 1.19 2.94 1.64 1.67 1.59 2.82 2.11 2.50 5.66 3.33 3.92 2.78 4.04 5.26 K intron_retention CG9855,RI_chr3R_222522_222581,RI_chr3R_222525_222604,I_chr3R_223384_223429 chr3R - chr3R_222528_222581 chr3R_222527_222528;chr3R_222581_222582 chr3R_221705_222527;chr3R_222582_222650 73.03 NA NA 73.33 NA 90.00 NA NA 80.00 NA NA 46.15 NA 88.89 81.82 NA NA NA NA 69.23 NA 77.78 NA 72.73 NA NA 90.91 NA 64.29 NA 100.00 55.56 NA NA NA NA NA NA NA 52.94 64.29 NA NA NA 76.47 75.00 80.00 65.00 64.71 60.00 NA NA 66.67 NA NA NA 81.82 60.87 K intron_retention CG14883 chr3R + chr3R_12282442_12282517 chr3R_12282441_12282442;chr3R_12282517_12282518 chr3R_12282122_12282441;chr3R_12282518_12282666 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 4.76 0.00 NA 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 6.67 0.00 12.50 0.00 0.00 0.00 NA 0.00 9.52 0.00 0.00 0.00 0.00 3.33 NA 4.55 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention CG31531,I_chr3R_485548_485960,I_chr3R_485608_485960,noncoding_14584,I_chr3R_486122_506500,I_chr3R_496573_505950,I_chr3R_523978_526879 chr3R + chr3R_485399_485957 chr3R_485398_485399;chr3R_485957_485958 chr3R_485382_485398;chr3R_485958_486121 100.00 100.00 100.00 95.45 91.67 100.00 100.00 95.65 97.73 100.00 100.00 100.00 92.86 100.00 100.00 95.83 100.00 100.00 95.83 97.06 91.67 96.67 96.55 95.00 100.00 100.00 100.00 100.00 95.83 94.44 100.00 90.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 96.88 100.00 97.06 100.00 100.00 100.00 92.86 87.50 100.00 96.00 100.00 100.00 100.00 100.00 NA 95.00 92.86 100.00 93.33 K alternative_acceptor Imp,I_chrX_10699490_10700695,RI_chrX_10699665_10700501,RI_chrX_10699665_10700695 chrX - chrX_10699665_10700501;chrX_10699547_10700501 chrX_10699503_10700501 chrX_10700502_10700547;chrX_10699299_10699502 28.57 40.00 25.00 46.67 NA 40.00 13.04 39.29 19.23 NA 46.67 38.46 33.33 28.57 41.67 36.36 50.00 33.33 41.18 35.00 14.29 18.75 53.85 NA NA 20.00 16.67 28.57 NA 12.50 25.00 NA 6.25 41.38 16.67 14.29 NA NA NA 44.44 NA 46.67 23.08 0.00 NA 20.00 NA 5.00 37.50 NA NA NA NA NA 27.27 NA NA 8.33 K alternative_donor PGRP-LC,E_chr3L_9335847_9338977 chr3L + chr3L_9338168_9338708 chr3L_9338225_9338708 chr3L_9338709_9338771;chr3L_9338000_9338167 15.15 11.11 25.00 10.53 21.43 23.08 25.00 30.00 10.53 NA NA 15.00 NA NA 29.41 16.67 NA 15.79 7.14 15.15 16.67 11.76 5.56 17.65 NA NA 16.67 13.33 NA 5.88 20.00 NA 18.18 25.00 NA NA 12.50 NA 14.29 18.18 NA 20.83 23.08 14.29 14.29 14.29 NA 14.29 23.08 8.70 10.53 NA NA NA 18.18 NA 11.11 15.00 N alternative_donor Lag1,RI_chrX_6153758_6153930,I_chrX_6153758_6155077,RI_chrX_6153758_6161036,I_chrX_6160907_6161036 chrX - chrX_6153758_6155077;chrX_6153758_6154631;chrX_6153758_6161036;chrX_6153758_6154193;chrX_6153758_6154358;chrX_6153758_6160439 chrX_6153758_6153930 chrX_6153658_6153757;chrX_6161037_6161136 0.88 1.22 0.42 0.87 0.56 1.04 0.91 0.27 0.75 2.56 0.97 0.50 0.91 1.45 1.27 0.67 1.53 0.91 0.42 0.38 0.91 0.37 0.87 0.95 1.04 0.52 2.21 0.99 1.07 1.12 0.46 2.09 1.10 0.27 1.40 0.46 0.65 0.88 0.36 0.74 1.72 1.33 0.51 0.77 0.98 1.02 1.23 0.94 0.47 0.42 0.32 0.59 3.06 0.56 0.40 2.39 0.74 0.61 K intron_retention Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16109342_16110644 chr3L_16109341_16109342;chr3L_16110644_16110645 chr3L_16109132_16109341;chr3L_16110645_16111208 11.57 9.02 13.79 14.29 0.00 2.38 13.13 6.15 4.49 8.06 8.00 9.79 13.16 9.86 7.14 11.57 3.57 8.97 13.24 6.23 4.94 44.60 9.25 9.38 20.18 25.00 12.10 9.86 18.92 14.55 7.25 20.99 18.11 6.67 12.30 26.15 9.41 9.15 14.42 11.91 16.67 6.76 5.36 15.92 18.55 16.67 16.13 15.84 6.98 10.42 11.70 9.18 15.79 16.67 8.33 10.10 12.20 15.24 K multi_cassette tmod,I_chr3R_26398795_26402319,I_chr3R_26402545_26402900,I_chr3R_26402561_26402900,I_chr3R_26403024_26403083 chr3R + chr3R_26398795_26403838 chr3R_26398795_26402319;chr3R_26402541_26402900;chr3R_26403281_26403838 chr3R_26402320_26402540;chr3R_26402901_26403280 chr3R_26398695_26398794;chr3R_26403839_26404436 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 94.74 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention EcR,noncoding_4593,I_chr2R_2005385_2010386,RI_chr2R_2018630_2018702,tRNA:K2:42Ae chr2R - chr2R_1982577_2010386 chr2R_1982576_1982577;chr2R_2010386_2010387 chr2R_1982062_1982576;chr2R_2010387_2010486 8.82 0.00 NA 0.00 NA 12.50 15.00 12.00 9.38 0.00 25.00 2.44 10.00 NA 0.00 11.11 NA 0.00 0.00 12.20 14.29 0.00 9.09 7.14 0.00 NA 7.14 0.00 9.38 8.82 0.00 41.18 3.64 10.00 12.00 9.68 0.00 0.00 5.71 0.00 12.90 8.11 NA 5.26 25.00 16.67 NA 11.76 10.81 35.71 0.00 NA NA NA 0.00 NA NA 11.76 K intron_retention deltaCOP,I_chrX_1754047_1754089,I_chrX_1755132_1755191,E_chrX_1755139_1755188,I_chrX_1757755_1757801 chrX - chrX_1754404_1754459 chrX_1754403_1754404;chrX_1754459_1754460 chrX_1754090_1754403;chrX_1754460_1754654 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.69 0.36 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.27 0.28 K alternative_donor Sox14 chr2R + chr2R_19868269_19871066 chr2R_19868315_19871066 chr2R_19871067_19871533;chr2R_19867418_19868268 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.35 0.00 4.76 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG5741,I_chr3L_8928033_8928095 chr3L - chr3L_8927409_8927504 chr3L_8927412_8927504 chr3L_8927505_8927696;chr3L_8927331_8927408 95.92 100.00 100.00 90.24 97.30 95.00 94.37 100.00 95.92 92.59 100.00 97.37 92.50 91.89 100.00 98.08 95.00 95.56 97.67 91.14 97.73 96.30 98.28 98.44 94.83 95.16 98.08 97.73 98.59 92.31 97.62 95.65 96.55 95.45 96.23 92.59 97.06 95.65 100.00 95.16 93.02 93.24 96.15 95.92 93.18 100.00 92.50 95.00 93.06 97.30 95.16 97.56 96.43 95.12 100.00 93.02 93.33 92.16 K jcn_only_AA tra2,REFI_chr2R_10491644_10491701 chr2R - chr2R_10491629_10491701 chr2R_10491634_10491701 chr2R_10491702_10491801;chr2R_10491620_10491628 42.87 45.45 51.72 34.21 NA 44.12 52.46 40.91 50.00 NA 48.15 47.54 46.43 38.10 45.45 56.72 48.00 40.62 53.57 40.74 36.67 41.18 41.18 40.00 NA 29.41 30.43 NA NA 53.85 25.00 41.94 40.00 NA 41.94 44.12 66.67 69.70 41.94 44.74 38.46 32.50 36.36 45.00 25.00 43.75 43.24 43.33 50.79 48.00 42.50 NA 44.00 30.00 40.74 41.86 54.55 35.29 K intron_retention MP1 chr3R + chr3R_134556_134616 chr3R_134555_134556;chr3R_134616_134617 chr3R_134342_134555;chr3R_134617_135559 0.00 0.00 0.00 3.05 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.38 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 K intron_retention pygo,noncoding_20344 chr3R - chr3R_27405608_27405674 chr3R_27405607_27405608;chr3R_27405674_27405675 chr3R_27403028_27405607;chr3R_27405675_27406426 74.07 72.22 78.57 79.31 73.33 80.00 70.00 84.00 74.29 75.00 83.33 76.67 56.25 82.35 65.00 68.97 83.33 71.43 66.67 82.86 87.50 100.00 67.86 61.29 87.50 93.33 74.07 80.95 94.74 74.07 92.31 75.00 67.44 61.29 82.61 65.22 77.42 66.67 80.77 72.50 68.75 73.53 81.82 58.62 71.43 81.48 71.43 67.65 76.47 65.00 71.43 50.00 58.33 81.82 85.71 73.33 66.67 66.67 K cassette CG40263,F_chr2RHet_1265687_1293040,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1324541_1335781;chr2RHet_1333469_1335781 chr2RHet_1324541_1335106,chr2RHet_1333469_1335106;chr2RHet_1335333_1335781 chr2RHet_1335107_1335332 chr2RHet_1324446_1324540;chr2RHet_1335782_1335833 14.29 7.69 15.00 17.65 10.00 6.67 6.67 7.89 6.98 NA 50.00 14.29 14.29 10.81 11.11 11.90 12.00 27.78 9.68 11.11 18.18 NA 27.78 16.67 10.00 15.00 6.67 NA NA 16.67 14.29 NA NA 6.90 18.18 33.33 NA 10.00 NA 18.18 NA 7.84 13.04 19.05 NA 30.00 15.38 NA 12.50 NA 15.00 12.50 42.86 16.67 17.24 10.53 30.00 NA K cassette Dscam,FI_chr2R_3236481_3242386,I_chr2R_3237222_3249222,I_chr2R_3238411_3249222,I_chr2R_3238587_3249222,CEF_chr2R_3238803_3249222,I_chr2R_3239090_3249222,FI_chr2R_3239545_3249222,F_chr2R_3240528_3249222,FI_chr2R_3241198_3249222,FI_chr2R_3242511_3249222,FI_chr2R_3242716_3249222,F_chr2R_3244156_3249222,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3236481_3249222 chr2R_3236481_3247586;chr2R_3247711_3249222 chr2R_3247587_3247710 chr2R_3236381_3236480;chr2R_3249223_3249322 57.14 NA NA NA NA NA NA NA 57.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG1622,I_chrX_13192409_13192738,EI_chrX_13192857_13192928 chrX + chrX_13192846_13192928 chrX_13192857_13192928 chrX_13192929_13192997;chrX_13192807_13192845 6.47 4.38 6.59 5.91 9.65 2.56 16.81 4.52 5.54 6.09 8.26 5.06 3.45 10.42 18.00 3.42 5.26 9.63 7.24 6.90 3.42 7.24 3.64 2.42 6.80 9.15 12.78 15.79 10.45 7.22 21.02 7.55 7.08 5.73 4.22 4.97 6.47 6.36 6.05 6.55 7.49 7.50 7.14 5.38 6.15 5.91 0.68 7.94 7.96 5.93 4.93 8.24 6.08 9.22 5.98 8.05 2.55 5.98 K intron_retention CG1572,RI_chrX_11450380_11450442,I_chrX_11450380_11452520 chrX - chrX_11450380_11452571 chrX_11450379_11450380;chrX_11452571_11452572 chrX_11450280_11450379;chrX_11452572_11452620 0.35 0.45 0.00 0.36 0.33 0.00 0.50 0.50 0.46 0.63 0.65 0.24 0.35 0.43 0.59 0.46 0.31 0.24 0.19 0.69 0.23 0.00 0.00 0.48 0.40 0.42 0.49 0.85 0.90 0.21 0.32 0.61 0.36 0.21 0.51 0.20 0.47 0.00 0.24 0.31 0.00 0.26 0.24 0.36 0.00 0.53 0.27 0.32 0.38 0.24 0.74 0.00 0.00 0.38 0.40 0.12 0.15 0.38 K jcn_only_AD I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545799_17545855;chr2R_17545781_17545855;chr2R_17545615_17545855 chr2R_17545686_17545855 chr2R_17545856_17545985;chr2R_17545613_17545614 4.45 NA NA 3.03 9.52 9.38 4.55 3.85 3.57 NA 9.09 3.12 NA NA 0.00 4.35 NA 0.00 NA 7.32 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA NA 1.92 NA NA 9.09 NA NA NA 5.88 NA NA NA NA NA 13.51 NA NA NA K cassette CG31522,I_chr3R_270285_272146,I_chr3R_270285_272461,I_chr3R_271138_271887,I_chr3R_272255_272359,RI_chr3R_273677_279264 chr3R - chr3R_270285_272146;chr3R_271138_272146 chr3R_270285_271887,chr3R_271138_271887;chr3R_271969_272146 chr3R_271888_271968 chr3R_270228_270284;chr3R_272147_272246 5.13 0.00 5.26 9.09 5.88 5.56 0.00 4.17 8.89 NA NA 6.90 NA 5.56 12.50 5.26 6.25 18.18 5.00 6.38 NA 13.04 9.38 3.70 6.25 6.25 3.23 NA NA 0.00 NA NA 6.67 2.56 NA 5.26 3.85 3.70 6.25 2.38 7.69 7.14 0.00 2.56 NA 0.00 4.76 0.00 3.85 4.76 2.63 NA 0.00 3.85 7.69 5.00 3.70 7.14 N cassette CG32521,CREF_chrX_21082827_21152068,EF_chrX_21094675_21152068 chrX - chrX_21094675_21152072;chrX_21082827_21152072 chrX_21082827_21150208,chrX_21094675_21150208;chrX_21150214_21152072 chrX_21150209_21150213 chrX_21082727_21082826;chrX_21152073_21152168 71.37 NA NA 64.29 NA NA NA 75.00 83.33 NA NA NA 100.00 NA NA 72.73 NA NA NA 83.33 NA 32.00 NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA 70.00 25.00 50.00 NA NA NA NA NA NA NA K intron_retention cup,I_chr2L_6668135_6668341,CG34310 chr2L + chr2L_6674229_6674300 chr2L_6674228_6674229;chr2L_6674300_6674301 chr2L_6674003_6674228;chr2L_6674301_6674741 0.00 0.00 0.00 4.76 0.00 0.00 2.63 4.76 4.00 NA 4.35 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.13 NA NA 0.00 0.00 0.00 0.00 4.00 2.27 0.00 0.00 0.00 9.09 0.00 0.00 0.00 3.57 0.00 0.00 5.56 NA 0.00 3.33 0.00 0.00 K intron_retention CG13568,I_chr2R_19941242_19941302 chr2R - chr2R_19941667_19941721 chr2R_19941666_19941667;chr2R_19941721_19941722 chr2R_19941579_19941666;chr2R_19941722_19941824 8.60 NA NA NA NA NA NA NA 10.53 NA NA 0.00 NA NA NA NA NA NA NA 11.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA 6.67 K intron_retention Git chr2R - chr2R_6529720_6529781 chr2R_6529719_6529720;chr2R_6529781_6529782 chr2R_6529340_6529719;chr2R_6529782_6529929 0.00 0.00 0.00 2.08 0.00 0.00 0.00 5.13 0.00 4.55 0.00 1.69 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 1.72 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.17 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 K intron_retention I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17181974_17182126,RI_chr3R_17182422_17182532,RI_chr3R_17183087_17183245,RI_chr3R_17183087_17183726,I_chr3R_17183481_17200781,I_chr3R_17183927_17184513,I_chr3R_17183927_17185306,RI_chr3R_17184319_17184513,I_chr3R_17184319_17185084,I_chr3R_17184319_17185284,noncoding_18168,RI_chr3R_17184792_17185306,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,RI_chr3R_17189607_17189988,I_chr3R_17190098_17190207,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17181974_17182039 chr3R_17181973_17181974;chr3R_17182039_17182040 chr3R_17181929_17181973 18.25 NA NA NA NA NA 14.29 NA 14.29 NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA NA NA K alternative_acceptor sec24,RI_chr2R_5764938_5764997,I_chr2R_5768722_5769689 chr2R - chr2R_5764938_5764997 chr2R_5764945_5764997 chr2R_5764998_5765095;chr2R_5764838_5764937 100.00 100.00 97.30 98.21 100.00 100.00 100.00 100.00 98.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 98.08 100.00 100.00 100.00 100.00 97.87 97.06 96.97 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 98.77 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.04 100.00 K alternative_acceptor larp,I_chr3R_24150390_24150531,F_chr3R_24151542_24153876,RI_chr3R_24160430_24161527 chr3R - chr3R_24150372_24150531 chr3R_24150390_24150531 chr3R_24150532_24150599;chr3R_24150290_24150371 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 1.09 0.00 0.00 0.00 0.37 0.00 0.00 0.93 0.00 0.00 0.56 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.85 0.40 0.00 0.00 0.00 0.00 0.43 0.00 0.00 1.67 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rip11,E_chrX_18532733_18533695,RI_chrX_18530353_18530870,RI_chrX_18530742_18530870,RI_chrX_18544139_18544185 chrX - chrX_18530907_18531363 chrX_18530906_18530907;chrX_18531363_18531364 chrX_18530871_18530906;chrX_18531364_18531426 27.16 30.77 NA 23.53 NA NA 45.45 26.09 52.38 NA 20.00 47.62 NA NA NA 14.29 NA NA NA 36.84 NA 23.81 24.14 42.86 NA NA 21.05 31.25 NA 20.00 20.00 NA 28.57 54.55 NA 26.32 22.22 NA 25.00 NA 15.00 50.00 NA NA 46.15 31.25 NA 14.29 28.00 NA 37.50 NA 33.33 NA NA 30.77 22.22 12.90 K alternative_donor Shawn_Tyler,RpS10b chrX + chrX_19492107_19492181 chrX_19492111_19492181 chrX_19492182_19492238;chrX_19492047_19492106 2.13 2.94 1.59 4.35 4.44 1.47 6.35 2.14 1.15 2.56 2.70 2.06 0.00 2.27 1.25 2.33 0.00 1.79 2.13 3.00 1.89 2.20 0.00 1.82 0.00 4.00 2.78 5.26 4.62 2.78 1.89 1.59 2.19 1.75 2.78 2.00 5.00 0.00 0.00 1.67 2.94 1.70 3.92 3.23 1.82 0.95 2.04 3.17 1.52 6.00 3.33 3.03 3.45 0.00 1.82 1.75 2.53 1.82 K intron_retention gw,I_chr4_679135_681671 chr4 - chr4_673460_673526 chr4_673459_673460;chr4_673526_673527 chr4_673272_673459;chr4_673527_673677 6.45 0.00 12.24 9.00 0.00 7.69 5.49 7.14 7.63 9.09 5.56 6.06 10.00 9.26 11.76 12.99 7.69 5.88 7.81 7.76 0.00 12.50 11.54 8.11 0.00 8.82 8.70 7.69 0.00 6.45 8.97 0.00 0.00 7.41 6.25 6.52 6.06 0.00 3.57 1.27 0.00 10.78 8.00 0.00 0.00 2.70 5.56 5.00 5.31 4.65 8.82 0.00 3.45 7.41 7.14 5.26 9.43 2.44 K jcn_only_AA Hr78,I_chr3L_21490089_21490390,CG33214 chr3L - chr3L_21490089_21490390;chr3L_21489978_21490390;chr3L_21490023_21490390 chr3L_21490008_21490390 chr3L_21490391_21490490;chr3L_21489920_21489977 62.96 NA NA 50.00 NA NA 76.00 64.71 46.67 NA NA NA 80.00 NA NA 66.67 NA NA NA 52.17 NA NA NA NA NA NA NA NA NA NA NA NA NA 59.26 NA NA NA NA NA NA NA 62.96 NA NA NA NA NA NA 69.23 NA NA NA NA NA 54.55 NA NA NA K jcn_only_AA CG2004,I_chrX_8608130_8608508,RI_chrX_8608147_8608508,I_chrX_8608169_8608438 chrX - chrX_8608169_8608508;chrX_8608147_8608508;chrX_8608150_8608508 chrX_8608130_8608508 chrX_8608509_8608538;chrX_8608069_8608129 0.00 1.52 0.00 0.00 1.85 1.96 1.27 1.10 1.52 0.00 0.00 0.78 0.00 0.00 1.47 0.00 0.00 0.00 1.37 0.00 0.00 1.64 0.00 1.12 0.00 0.00 0.00 1.22 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 0.00 0.00 0.81 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 1.12 0.00 K intron_retention RI_chrX_1954878_1955077,CG4281,CG14054,I_chrX_1962457_1964222 chrX - chrX_1957396_1957449 chrX_1957395_1957396;chrX_1957449_1957450 chrX_1956980_1957395;chrX_1957450_1958521 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 98.51 96.30 100.00 100.00 98.33 100.00 100.00 100.00 96.97 100.00 97.73 100.00 100.00 98.65 100.00 100.00 100.00 97.78 100.00 97.87 98.78 98.28 100.00 95.83 100.00 100.00 100.00 97.37 98.67 98.75 98.31 100.00 100.00 97.44 100.00 100.00 97.78 100.00 100.00 K alternative_donor Myb,RI_chrX_15752571_15753225 chrX - chrX_15751579_15751682;chrX_15751579_15751709;chrX_15751579_15751749 chrX_15751579_15751673 chrX_15749823_15751578;chrX_15751750_15751876 84.31 88.46 89.19 84.48 80.00 85.71 78.33 85.53 83.72 75.00 76.92 88.73 87.18 85.00 91.43 87.91 78.95 89.66 91.67 80.90 71.43 90.62 82.93 85.00 86.67 83.87 82.76 76.47 82.61 81.48 84.91 72.73 69.77 88.61 81.82 94.44 76.67 86.67 90.00 76.79 78.95 79.49 81.08 86.84 82.61 89.19 84.21 84.31 84.44 86.67 85.19 73.08 85.71 71.43 87.76 80.95 75.00 84.48 K cassette l(3)neo38 chr3R - chr3R_7595826_7603195 chr3R_7595826_7596875;chr3R_7597023_7603195 chr3R_7596876_7597022 chr3R_7595591_7595825;chr3R_7603196_7603262 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.15 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA 100.00 K intron_retention Csk,I_chr3R_7463337_7463512,I_chr3R_7468928_7472509 chr3R - chr3R_7462728_7462791 chr3R_7462727_7462728;chr3R_7462791_7462792 chr3R_7462051_7462727;chr3R_7462792_7463336 0.00 0.00 0.00 0.00 0.00 0.00 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 1.21 0.43 0.00 0.00 0.00 0.79 0.55 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.53 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention CG17119,sav chr3R - chr3R_18880054_18880450 chr3R_18880053_18880054;chr3R_18880450_18880451 chr3R_18880008_18880053;chr3R_18880451_18880553 25.00 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA 25.00 NA NA NA NA NA NA 18.75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 36.36 NA NA NA NA NA 11.76 28.00 25.00 K jcn_only_AA Mnf,RI_chr3L_11108913_11109028 chr3L - chr3L_11109459_11109527 chr3L_11109462_11109527 chr3L_11109528_11109566;chr3L_11109241_11109458 95.24 97.62 95.00 94.95 93.18 97.92 98.61 91.57 93.97 89.09 88.46 94.37 94.34 97.87 85.19 97.33 100.00 90.62 97.96 96.95 96.67 95.05 95.16 94.34 93.55 97.78 95.24 90.74 90.91 98.36 95.35 92.50 96.25 94.68 92.11 95.35 95.59 92.11 91.89 97.85 95.45 97.32 96.67 94.87 97.92 94.92 92.31 95.35 95.60 96.72 98.08 96.88 96.00 92.31 100.00 94.59 95.45 94.57 K intron_retention Axn,I_chr3R_25849563_25849626 chr3R + chr3R_25859466_25859544 chr3R_25859465_25859466;chr3R_25859544_25859545 chr3R_25859321_25859465;chr3R_25859545_25859847 8.51 6.06 6.25 0.00 8.33 0.00 8.33 3.23 9.80 11.11 15.00 5.66 0.00 13.04 3.85 3.23 20.00 0.00 0.00 8.20 0.00 11.48 6.90 10.00 8.51 3.23 13.51 20.83 16.67 12.50 4.88 8.33 10.53 0.00 14.29 15.38 10.00 14.29 5.77 6.49 0.00 12.77 11.11 13.95 0.00 11.76 7.14 9.09 13.04 10.81 10.81 16.67 10.34 7.69 5.26 11.54 8.70 5.56 K mutually_exclusive par-1,EFI_chr2R_15361473_15362032,RI_chr2R_15361473_15362035,I_chr2R_15361473_15366246,I_chr2R_15362147_15365120,F_chr2R_15362147_15365138,I_chr2R_15362147_15365165,RI_chr2R_15363358_15365120,I_chr2R_15363358_15366246,I_chr2R_15365210_15370456 chr2R + chr2R_15361473_15366246,chr2R_15366371_15370456 chr2R_15361473_15365138,chr2R_15365210_15370456 chr2R_15366247_15366370 chr2R_15365139_15365209 chr2R_15361373_15361472;chr2R_15370457_15370556 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Syx5,fzy chr2L + chr2L_16307527_16307575 chr2L_16307526_16307527;chr2L_16307575_16307576 chr2L_16307510_16307526;chr2L_16307576_16308329 100.00 100.00 100.00 100.00 97.62 100.00 99.28 98.13 99.39 100.00 100.00 99.12 100.00 100.00 100.00 100.00 100.00 100.00 97.80 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention plx,noncoding_14842 chr3R + chr3R_1511993_1512510 chr3R_1511992_1511993;chr3R_1512510_1512511 chr3R_1511864_1511992;chr3R_1512511_1512761 91.67 NA NA 87.50 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 92.86 88.89 NA NA NA NA NA 69.23 NA 91.67 NA NA NA NA NA 90.00 100.00 NA NA NA NA NA 90.00 NA NA NA K intron_retention didum,I_chr2R_3393005_3393348 chr2R + chr2R_3392807_3392868 chr2R_3392806_3392807;chr2R_3392868_3392869 chr2R_3392280_3392806;chr2R_3392869_3393004 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 2.13 0.00 0.00 0.00 5.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG30122,I_chr2R_14526123_14526189 chr2R - chr2R_14520492_14520558 chr2R_14520491_14520492;chr2R_14520558_14520559 chr2R_14519851_14520491;chr2R_14520559_14520629 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 1.24 0.65 0.00 0.00 0.00 0.99 1.42 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 1.55 K jcn_only_AA CG9674,I_chr3L_16785451_16785540,I_chr3L_16785706_16785748,I_chr3L_16793055_16800660 chr3L - chr3L_16785436_16785540;chr3L_16784791_16785540 chr3L_16785451_16785540 chr3L_16785541_16785640 0.90 1.07 0.35 0.20 0.00 0.44 0.45 0.38 0.89 1.28 0.90 1.62 1.14 1.00 0.42 0.30 1.09 0.00 0.38 0.69 0.96 1.79 1.05 0.39 0.66 2.23 0.27 0.96 1.48 1.11 0.36 2.56 1.08 0.71 0.87 2.35 0.61 1.67 1.76 1.53 2.78 0.73 0.00 0.87 1.62 1.81 1.14 1.29 1.00 0.85 0.60 0.00 0.00 1.67 0.66 1.55 0.41 1.20 K intron_retention CG10365,I_chr3R_19549381_19554106,I_chr3R_19554176_19554388 chr3R + chr3R_19549381_19554388 chr3R_19549380_19549381;chr3R_19554388_19554389 chr3R_19549281_19549380;chr3R_19554389_19554488 12.51 13.04 7.69 12.12 16.67 17.39 18.92 19.23 11.36 0.00 17.65 16.67 14.29 19.05 14.29 6.67 10.53 20.00 16.13 17.50 0.00 NA 8.33 12.90 19.05 3.85 9.09 NA 6.67 9.38 12.00 22.22 15.15 24.14 11.76 NA 8.33 9.09 16.13 14.58 6.67 20.75 11.11 12.00 10.71 10.26 10.71 9.43 17.78 22.73 12.90 12.00 NA 3.70 21.88 4.35 NA 15.79 K alternative_donor Karybeta3,I_chr3R_475924_476306,I_chr3R_476219_476306 chr3R + chr3R_475490_476306 chr3R_476219_476306 chr3R_476307_476406;chr3R_475064_475489 0.73 0.80 0.56 0.43 0.57 0.34 0.62 0.42 0.60 1.02 0.54 0.71 0.82 0.40 0.54 1.41 0.47 0.37 0.71 0.73 0.43 2.38 1.12 0.95 0.97 0.33 1.53 1.66 2.14 0.72 1.07 0.93 0.70 0.39 1.06 0.97 1.23 1.15 0.82 0.64 0.99 0.74 0.40 0.65 1.02 0.55 0.73 1.26 0.79 0.68 0.96 0.92 0.78 0.48 0.37 0.82 0.31 0.67 K jcn_only_AD CG1623,I_chr2R_5717365_5717896 chr2R - chr2R_5717365_5721013 chr2R_5717365_5720983 chr2R_5717265_5717364;chr2R_5721014_5721052 59.62 54.88 66.67 53.49 61.39 54.02 50.00 45.53 56.60 47.62 60.71 63.11 59.57 70.59 43.62 52.43 39.44 48.57 54.69 54.45 60.00 44.22 80.43 70.00 73.33 59.21 69.70 78.79 76.74 76.67 43.59 61.46 52.87 44.17 57.58 69.05 64.71 67.35 77.36 52.75 64.81 54.14 37.50 57.69 46.48 70.33 72.62 59.62 47.78 62.16 71.64 58.14 75.00 74.47 47.13 68.85 67.68 60.16 K alternative_donor hang,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16326733_16327197 chrX_16326745_16327197 chrX_16327198_16328171;chrX_16324959_16326732 50.00 44.71 50.00 36.08 43.06 49.18 52.87 39.22 49.72 77.59 49.02 44.62 56.52 42.86 40.00 49.35 39.73 41.94 50.68 45.83 41.10 51.30 52.99 55.84 55.17 40.58 53.49 66.15 46.58 56.32 46.05 50.00 43.93 36.59 53.33 46.58 51.81 48.10 52.89 61.00 48.57 50.74 50.85 52.88 51.06 54.76 54.55 48.10 47.76 62.50 52.17 53.45 58.54 55.88 48.42 50.00 38.00 51.35 N alternative_donor CG30152 chr2R + chr2R_16558842_16559250 chr2R_16559184_16559250 chr2R_16559251_16559363;chr2R_16558698_16558841 100.00 100.00 100.00 92.11 100.00 100.00 100.00 100.00 100.00 93.26 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.81 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 N alternative_acceptor yki chr2R - chr2R_19954778_19954987 chr2R_19954887_19954987 chr2R_19954988_19955750;chr2R_19954686_19954777 0.00 0.00 0.00 0.00 0.00 0.00 3.47 0.00 0.33 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.52 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 K jcn_only_AA fra chr2R + chr2R_8445281_8445922;chr2R_8445281_8445949 chr2R_8445281_8446375 chr2R_8445263_8445280;chr2R_8446376_8446583 7.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA 0.00 NA 13.64 NA NA NA NA NA NA NA K intron_retention CkIIalpha,I_chr3L_23092989_23093344,RI_chr3L_23094196_23095221 chr3L + chr3L_23092824_23095221 chr3L_23092823_23092824;chr3L_23095221_23095222 chr3L_23092680_23092823;chr3L_23095222_23095321 0.00 0.00 0.00 0.00 4.00 0.00 0.00 4.26 2.60 NA 0.00 0.00 0.00 0.00 0.00 0.00 3.85 NA 0.00 3.45 NA NA 0.00 6.67 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 4.88 NA NA 0.00 NA NA 5.56 NA 6.25 NA 0.00 NA NA 10.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA K intron_retention ref(2)P,RI_chr2L_19545002_19545062,I_chr2L_19545002_19545156,EI_chr2L_19548696_19549582 chr2L + chr2L_19545102_19545156 chr2L_19545101_19545102;chr2L_19545156_19545157 chr2L_19545063_19545101;chr2L_19545157_19545162 1.42 0.00 0.00 2.32 0.97 1.82 1.42 1.85 2.15 2.20 0.74 1.80 0.00 3.03 2.54 0.00 2.50 2.11 2.08 1.12 1.36 2.15 1.19 1.25 0.81 3.10 2.81 3.05 2.93 1.02 1.55 1.12 1.12 0.42 0.00 0.47 2.20 0.93 0.92 1.43 0.64 1.86 1.57 1.76 0.00 2.66 1.04 1.96 2.00 1.29 0.00 3.05 0.00 0.77 2.27 1.84 1.13 0.00 K alternative_donor Mpcp chr3L + chr3L_14530803_14531103;chr3L_14530949_14531103 chr3L_14530935_14531103 chr3L_14531104_14531521;chr3L_14530797_14530802 1.23 1.17 1.13 1.97 0.98 0.94 1.48 2.33 0.79 0.28 0.44 1.47 2.00 2.36 1.25 2.85 0.86 1.42 1.30 1.07 0.93 0.69 1.32 0.78 0.91 1.28 2.24 0.98 1.30 2.47 1.44 1.75 0.81 1.76 2.07 3.08 0.35 0.92 0.36 0.80 4.17 0.75 1.54 1.15 0.86 0.62 1.04 1.28 1.23 1.63 1.33 1.09 0.88 2.22 1.42 0.68 0.94 1.25 K alternative_acceptor ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13414818_13414880 chr2R_13414821_13414880 chr2R_13414881_13414944;chr2R_13414719_13414817 98.63 98.25 97.62 98.61 100.00 96.97 98.41 98.55 100.00 96.97 100.00 100.00 100.00 100.00 100.00 98.44 100.00 100.00 94.74 97.73 100.00 100.00 96.59 100.00 100.00 97.87 98.21 100.00 97.96 98.33 100.00 100.00 98.86 98.36 98.11 98.08 97.87 100.00 98.57 100.00 97.22 98.97 100.00 100.00 100.00 100.00 96.55 98.63 98.84 95.45 98.53 97.96 96.15 100.00 100.00 100.00 96.00 97.87 K intron_retention noncoding_5362,snoRNA:Or-CD2,CG8777,RI_chr2R_4989921_4989993,Vang chr2R + chr2R_4984497_4984746 chr2R_4984496_4984497;chr2R_4984746_4984747 chr2R_4984431_4984496;chr2R_4984747_4984817 6.67 NA 0.00 6.25 NA 10.34 7.14 14.63 8.33 NA NA 10.81 12.50 6.45 6.67 15.38 6.67 NA 12.90 8.33 NA NA NA NA NA 6.45 NA NA NA NA 0.61 NA NA 4.55 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 12.31 0.00 NA NA NA NA 13.04 4.76 5.00 15.00 K jcn_only_AA CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_244354_244443 chr4_244368_244443 chr4_244444_244512;chr4_244183_244353 96.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG31531,I_chr3R_523978_525892,I_chr3R_523978_526879 chr3R + chr3R_523978_525892 chr3R_523978_525438;chr3R_525582_525892 chr3R_525439_525581 chr3R_523878_523977;chr3R_525893_525992 100.00 100.00 96.67 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.28 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG13742,I_chr2R_4979276_4979936 chr2R - chr2R_4973326_4973449;chr2R_4973359_4973449 chr2R_4973398_4973449 chr2R_4973450_4973534;chr2R_4973308_4973325 75.00 NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6449696_6498054;chr2R_6493563_6498054;chr2R_6457648_6498054 chr2R_6493640_6498054 chr2R_6498055_6499020 4.35 6.00 0.00 0.00 13.33 2.13 2.22 6.25 4.35 0.00 0.00 4.35 1.96 2.38 1.96 5.88 11.11 0.00 3.03 5.81 2.17 6.67 2.78 8.33 0.00 8.57 10.20 14.29 NA 2.50 3.57 NA 11.76 4.04 10.53 4.44 5.81 8.16 3.57 2.53 NA 6.60 0.00 4.26 NA 4.35 8.70 5.88 7.77 2.78 5.17 6.98 17.24 NA 5.88 5.00 4.00 0.00 K cassette RpL40 chr2L + chr2L_4227750_4228011 chr2L_4227750_4227827;chr2L_4227957_4228011 chr2L_4227828_4227956 chr2L_4227642_4227749;chr2L_4228012_4228065 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.02 0.03 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.29 0.56 0.21 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.06 0.00 0.01 0.00 0.16 0.04 0.19 0.18 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 K intron_retention ics chr2L - chr2L_13639797_13639859 chr2L_13639796_13639797;chr2L_13639859_13639860 chr2L_13639497_13639796;chr2L_13639860_13640481 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 2.94 1.10 0.00 0.00 0.00 0.00 0.00 0.00 1.67 7.69 3.23 0.00 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.51 0.00 2.50 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG33558,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2816779_2817354;chr2R_2816779_2817459 chr2R_2816779_2817327 chr2R_2816679_2816778;chr2R_2817460_2817510 96.43 94.64 100.00 98.21 NA 96.43 97.96 82.98 95.54 96.36 100.00 95.10 92.59 94.12 94.92 93.02 100.00 100.00 97.67 95.60 97.37 98.72 100.00 96.88 100.00 96.00 87.80 NA 97.30 94.68 98.00 94.23 95.96 98.68 96.88 95.31 93.92 100.00 97.58 90.00 91.49 99.06 94.74 96.61 97.87 95.10 96.00 96.20 94.12 96.77 100.00 96.77 96.00 94.67 94.59 100.00 100.00 97.47 K intron_retention Ide,I_chr3L_20366301_20366354,I_chr3L_20368434_20368519,I_chr3L_20368443_20368519 chr3L - chr3L_20368462_20368519 chr3L_20368461_20368462;chr3L_20368519_20368520 chr3L_20368327_20368461;chr3L_20368520_20368619 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 2.00 6.78 0.00 6.90 0.00 0.00 2.78 4.17 0.00 0.00 0.00 0.00 0.00 0.00 10.81 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7611,I_chr3L_21518817_21520283 chr3L + chr3L_21518817_21519083 chr3L_21518816_21518817;chr3L_21519083_21519084 chr3L_21518717_21518816;chr3L_21519084_21520036 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 6.06 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG11360,noncoding_20761,I_chr4_701221_705206,I_chr4_705000_705206 chr4 + chr4_692243_701065;chr4_692014_701065 chr4_691793_701065 chr4_701066_701220;chr4_691790_691792 0.00 0.00 8.33 0.00 0.00 0.00 0.00 5.88 0.00 25.00 20.00 4.55 0.00 9.09 0.00 5.56 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 NA 11.11 0.00 0.00 0.00 0.00 7.69 NA 0.00 6.67 0.00 0.00 0.00 0.00 NA 0.00 NA 7.14 10.00 0.00 NA 0.00 0.00 0.00 4.76 NA 9.09 0.00 0.00 0.00 8.33 0.00 NA NA K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2813977;chr2R_2814097_2814174;chr2R_2814327_2814894;chr2R_2815657_2816013;chr2R_2816342_2816577;chr2R_2816779_2817354;chr2R_2817604_2817753 chr2R_2813978_2814096;chr2R_2814175_2814326;chr2R_2814895_2815656;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817355_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention kst,I_chr3L_3365752_3365816,I_chr3L_3367008_3367514 chr3L + chr3L_3366311_3366443 chr3L_3366310_3366311;chr3L_3366443_3366444 chr3L_3366200_3366310;chr3L_3366444_3366532 8.00 7.29 8.48 4.18 9.66 7.55 7.88 12.66 9.80 4.14 7.10 6.43 12.18 9.88 12.29 6.04 11.23 11.00 10.67 9.28 7.61 5.17 10.32 8.00 8.26 4.46 11.18 8.49 4.17 7.65 10.34 4.55 6.60 8.95 9.89 9.23 8.67 8.85 7.30 8.00 8.36 8.50 9.09 11.32 3.37 6.69 7.47 7.38 10.61 4.56 8.00 7.69 5.67 7.78 11.04 6.85 6.57 6.99 K cassette CG14869 chr3R - chr3R_11272581_11272945 chr3R_11272581_11272703;chr3R_11272875_11272945 chr3R_11272704_11272874 chr3R_11272496_11272580;chr3R_11272946_11272957 100.00 NA 100.00 83.33 100.00 100.00 NA 87.50 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 92.31 NA 90.00 100.00 87.50 NA NA NA NA NA NA NA NA 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA K jcn_only_AD nes chr3L - chr3L_19253331_19253636;chr3L_19253331_19253609;chr3L_19253331_19253676;chr3L_19253331_19253648;chr3L_19253331_19253745;chr3L_19253331_19253764 chr3L_19253331_19253632 chr3L_19253215_19253330;chr3L_19253765_19253779 71.43 71.43 69.05 72.09 71.43 51.52 56.36 53.85 66.00 65.62 NA 70.00 60.87 70.59 59.52 72.92 NA 62.50 75.00 62.90 54.55 55.00 77.55 84.21 58.62 76.00 61.29 66.67 75.00 90.48 65.12 75.00 81.25 56.67 81.25 80.95 45.16 60.00 78.26 74.14 66.67 71.43 76.67 84.62 77.78 79.07 72.00 93.75 73.33 NA 73.68 67.65 88.89 90.48 67.19 41.67 50.00 87.10 K intron_retention CG11839 chr3R + chr3R_20895773_20895924 chr3R_20895772_20895773;chr3R_20895924_20895925 chr3R_20895529_20895772;chr3R_20895925_20896603 5.50 12.50 NA 17.65 NA 6.67 10.00 6.25 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA 14.29 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA 17.65 0.00 NA 4.76 NA 0.00 NA NA NA NA 8.33 12.50 NA K cassette Fis1,I_chr2R_1491917_1492087,I_chr2R_1492154_1492214 chr2R - chr2R_1491518_1491748 chr2R_1491518_1491574;chr2R_1491676_1491748 chr2R_1491575_1491675 chr2R_1491405_1491517;chr2R_1491749_1491916 0.85 1.12 1.27 1.15 1.72 1.12 0.00 1.10 0.90 0.00 0.00 1.18 2.83 1.90 0.00 1.16 0.00 1.52 0.85 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 3.45 1.69 0.00 1.82 1.54 1.94 1.37 0.00 0.00 0.00 0.00 1.83 1.52 1.17 0.00 0.00 1.82 0.73 0.00 2.44 0.53 0.93 0.00 0.00 0.00 0.00 0.00 0.90 0.70 0.98 K intron_retention Ipk1 chr2R + chr2R_16761257_16762742 chr2R_16761256_16761257;chr2R_16762742_16762743 chr2R_16761156_16761256;chr2R_16762743_16762750 9.09 NA NA 36.36 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 4.55 NA NA 0.00 NA NA NA NA NA NA NA 13.33 NA NA NA NA 25.00 NA NA NA 13.64 NA 13.33 NA NA NA 6.67 NA 0.00 NA NA NA NA NA NA NA NA NA 9.09 K jcn_only_AA CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516330_21517792;chr3L_21516330_21517821 chr3L_21516330_21517073 chr3L_21516311_21516329 5.00 NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Pp2A-29B,I_chr2L_8367210_8367311,I_chr2L_8369561_8369715 chr2L + chr2L_8367210_8367311 chr2L_8367250_8367311 chr2L_8367312_8367379;chr2L_8367110_8367209 99.86 100.00 100.00 99.63 99.68 100.00 100.00 99.80 100.00 99.62 100.00 100.00 99.67 100.00 99.50 100.00 100.00 100.00 99.68 99.89 100.00 100.00 99.78 100.00 99.59 100.00 99.84 100.00 99.69 100.00 99.73 100.00 99.63 99.80 100.00 99.74 99.72 99.23 99.86 100.00 100.00 99.84 100.00 99.24 100.00 99.72 100.00 98.88 99.83 99.78 99.85 99.74 99.02 99.72 100.00 100.00 99.73 100.00 K intron_retention lace chr2L + chr2L_15503227_15503290 chr2L_15503226_15503227;chr2L_15503290_15503291 chr2L_15502117_15503226;chr2L_15503291_15503553 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.45 0.51 0.00 0.00 0.23 0.00 0.00 0.48 0.00 0.00 0.53 0.49 0.00 0.00 0.23 0.45 0.00 0.00 0.00 2.41 2.54 0.70 0.00 0.00 0.00 0.56 0.00 0.00 0.63 0.00 0.00 0.00 0.46 0.00 0.00 0.53 0.00 0.00 0.20 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9785143,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9770053_9771599 chr2R_9770052_9770053;chr2R_9771599_9771600 chr2R_9769906_9770052;chr2R_9771600_9771660 2.22 3.51 0.00 5.88 0.00 3.03 1.72 4.12 2.93 5.00 0.00 0.96 2.15 4.88 2.53 2.20 6.35 0.00 2.67 2.24 0.00 3.66 4.55 3.17 5.56 0.00 0.00 0.00 5.41 4.44 5.41 NA 0.00 2.56 0.00 0.00 1.40 0.00 0.00 0.00 NA 4.00 1.54 3.33 NA NA 0.00 10.00 6.84 NA 0.00 0.00 0.00 NA 3.81 NA NA NA K jcn_only_AD CG4365 chr3L + chr3L_20791960_20792242;chr3L_20791819_20792242;chr3L_20792100_20792242;chr3L_20792077_20792242 chr3L_20792089_20792242 chr3L_20792243_20793181;chr3L_20791802_20791818 27.27 38.46 21.43 11.11 NA NA 14.81 16.67 14.93 NA 19.51 17.39 NA 19.05 28.12 35.48 16.67 28.57 7.69 18.18 26.47 31.82 37.04 30.77 NA 44.83 60.71 34.78 NA NA 23.08 NA 41.38 13.89 NA NA 37.04 46.43 26.09 7.14 NA 23.64 12.90 38.10 54.55 37.04 27.27 32.00 33.33 23.33 33.33 NA 31.71 30.43 23.33 40.00 24.14 21.88 K alternative_donor eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341925_20342041;chr3L_20341636_20342041;chr3L_20341509_20342041;chr3L_20341865_20342041;chr3L_20341486_20342041;chr3L_20341522_20342041;chr3L_20341530_20342041;chr3L_20341629_20342041;chr3L_20341598_20342041;chr3L_20341759_20342041 chr3L_20341751_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 8.62 5.88 3.70 1.82 0.00 5.00 9.09 2.82 7.58 9.09 0.00 16.67 15.79 5.56 2.78 8.33 0.00 4.17 2.70 8.62 3.85 8.33 22.22 13.64 10.53 15.15 15.38 10.00 12.50 8.33 5.13 12.50 13.33 3.23 16.67 21.43 14.29 0.00 21.43 11.11 15.38 2.47 4.17 4.55 5.26 18.18 11.11 31.58 8.00 12.50 23.08 8.70 21.43 25.00 8.33 6.67 7.14 14.29 K intron_retention yki chr2R - chr2R_19953837_19954685 chr2R_19953836_19953837;chr2R_19954685_19954686 chr2R_19953784_19953836;chr2R_19954686_19954777 7.69 8.70 11.76 2.44 NA 0.00 21.05 10.64 11.76 NA NA 9.30 7.69 0.00 0.00 7.50 20.00 NA 4.35 8.47 NA 7.14 4.00 7.69 15.38 0.00 13.51 7.14 8.11 5.56 5.00 15.38 11.54 15.38 0.00 7.69 NA 8.33 12.82 10.34 6.82 13.04 NA 6.25 2.70 10.00 20.00 13.79 6.38 5.00 12.00 11.11 0.00 0.00 6.90 0.00 0.00 7.14 K jcn_only_AD plexA,RI_chr4_1036247_1047588,RI_chr4_1040642_1047395,RI_chr4_1044307_1046841,RF_chr4_1044307_1047399 chr4 - chr4_1044307_1047395;chr4_1044307_1047399 chr4_1044307_1047588 chr4_1044207_1044306;chr4_1047589_1047625 42.05 NA NA 45.24 NA NA 32.00 44.12 32.14 NA NA 59.46 43.48 33.33 NA 50.77 NA NA 32.00 40.62 NA 86.36 28.00 NA NA NA NA NA NA NA NA NA NA 21.43 NA NA NA NA NA NA NA 17.24 NA NA NA NA NA NA 50.00 NA 54.55 NA NA NA NA NA NA NA K intron_retention CG32594,CG5541 chrX + chrX_14938317_14942911 chrX_14938316_14938317;chrX_14942911_14942912 chrX_14938098_14938316;chrX_14942912_14943298 3.33 10.53 8.70 13.04 NA 0.00 17.65 9.09 2.78 NA NA 5.71 0.00 0.00 0.00 10.00 NA 11.11 0.00 8.51 6.25 NA 11.76 0.00 NA 9.09 0.00 0.00 NA 8.00 0.00 0.00 15.38 3.23 0.00 NA 6.67 0.00 11.76 0.00 NA 5.88 NA 9.09 NA 9.68 0.00 0.00 5.00 0.00 3.33 15.38 NA 0.00 6.25 0.00 0.00 0.00 K jcn_only_AD Trx-2,I_chr2L_9613459_9615301,I_chr2L_9613592_9615301,E_chr2L_9615344_9615833,I_chr2L_9615252_9615301 chr2L + chr2L_9613376_9615301;chr2L_9613541_9615301 chr2L_9615252_9615301 chr2L_9615302_9615343;chr2L_9613359_9613375 0.10 0.00 0.13 0.00 0.16 0.17 0.12 0.11 0.19 0.20 0.18 0.00 0.00 0.14 0.15 0.18 0.22 0.17 0.00 0.13 0.16 0.60 0.00 0.00 0.00 0.36 0.04 0.20 0.16 0.00 0.00 0.24 0.19 0.22 0.00 0.10 0.00 0.10 0.04 0.04 0.28 0.09 0.20 0.07 0.36 0.11 0.00 0.35 0.00 0.06 0.07 0.08 0.00 0.07 0.00 0.04 0.05 0.00 N alternative_acceptor eIF-1A chr3R + chr3R_14100864_14107415 chr3R_14100864_14101131 chr3R_14100759_14100863;chr3R_14107416_14107515 1.68 1.44 1.29 1.12 1.04 0.97 1.41 0.80 1.07 2.19 0.99 1.15 0.91 0.99 1.16 1.05 1.22 1.79 0.78 1.52 0.99 4.72 2.04 2.87 2.72 1.08 2.56 10.89 1.93 3.25 0.74 2.10 2.68 0.99 2.57 1.68 2.01 2.43 1.79 1.70 3.99 1.05 1.05 3.30 2.66 2.07 3.65 1.66 0.99 2.89 1.87 2.06 1.18 1.76 1.04 2.39 2.06 0.95 K jcn_only_AA Trn chr3L + chr3L_6186723_6187147 chr3L_6186723_6187144 chr3L_6186710_6186722;chr3L_6187148_6187250 87.72 86.67 92.50 89.41 NA 85.19 94.05 85.92 87.50 NA 93.33 82.80 87.50 81.40 86.89 86.44 90.00 84.21 83.93 95.56 95.12 92.45 94.74 86.36 83.33 88.46 87.50 94.64 90.91 90.74 84.38 NA 85.71 90.79 85.71 79.59 95.65 NA 84.85 95.08 NA 89.86 84.85 90.91 NA NA NA 94.29 87.95 NA 86.96 NA NA NA 93.88 NA NA NA K intron_retention CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2814174 chr2R_2813803_2813804;chr2R_2814174_2814175 chr2R_2813704_2813803;chr2R_2814175_2814326 3.92 5.26 6.67 4.08 0.00 0.00 7.69 4.65 7.46 0.00 0.00 5.00 14.29 0.00 9.30 9.09 0.00 0.00 0.00 0.00 0.00 0.00 7.41 4.29 0.00 0.00 0.00 NA 4.17 5.56 0.00 0.00 10.81 6.90 4.26 5.26 3.92 0.00 5.66 6.52 0.00 4.08 7.41 0.00 5.45 0.00 0.00 9.30 6.45 2.44 3.77 0.00 0.00 3.92 0.00 0.00 4.65 3.92 K intron_retention dpr17 chr3R + chr3R_7922739_7932860 chr3R_7922738_7922739;chr3R_7932860_7932861 chr3R_7922156_7922738;chr3R_7932861_7933804 0.00 0.00 NA 5.71 0.00 0.00 NA 0.00 4.55 NA NA 5.71 NA 0.00 0.00 0.00 0.00 0.00 0.00 3.28 NA 0.00 5.26 2.94 14.29 0.00 0.00 NA 0.00 9.52 0.00 0.00 0.00 6.06 0.00 14.29 5.71 8.00 0.00 0.00 NA 0.00 NA 3.28 0.00 0.00 0.00 6.25 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17985,Rpt1 chr2R - chr2R_3539859_3541982 chr2R_3539858_3539859;chr2R_3541982_3541983 chr2R_3539133_3539858;chr2R_3541983_3542542 0.00 0.00 0.00 NA 0.00 0.00 0.00 6.90 2.50 NA 0.00 0.00 0.00 0.00 5.71 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 10.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 8.33 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG8079 chr2R + chr2R_11109071_11109232 chr2R_11109071_11109132 chr2R_11108939_11109070;chr2R_11109233_11109322 4.08 14.81 NA 0.00 NA 0.00 7.69 5.71 7.41 NA NA 2.94 5.00 NA 4.35 2.94 NA 4.00 NA 0.00 NA NA 2.56 0.00 0.00 NA 0.00 NA NA NA 5.00 NA NA 5.71 4.55 0.00 0.00 4.55 8.00 10.64 NA 4.00 NA NA NA NA NA NA 2.33 NA 6.06 9.09 NA 4.17 0.00 NA NA NA K intron_retention CG4455 chr2L + chr2L_16353135_16353212 chr2L_16353134_16353135;chr2L_16353212_16353213 chr2L_16352814_16353134;chr2L_16353213_16354588 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 1.96 0.00 0.00 0.00 2.17 2.38 0.00 0.00 0.00 0.00 0.00 0.87 1.05 0.00 5.97 4.88 10.53 9.09 3.39 0.00 0.00 0.00 1.23 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.21 0.00 5.88 1.85 0.00 0.00 0.00 0.00 1.59 0.00 2.44 0.00 0.00 K cassette eff,I_chr3R_10559606_10563141,REI_chr3R_10560141_10566101,RE_chr3R_10563206_10565464,I_chr3R_10563206_10566728 chr3R - chr3R_10560141_10566101 chr3R_10560141_10563141;chr3R_10563206_10566101 chr3R_10563142_10563205 chr3R_10560109_10560140;chr3R_10566102_10566201 100.00 100.00 100.00 100.00 100.00 100.00 99.69 100.00 99.76 100.00 100.00 100.00 99.50 100.00 100.00 100.00 100.00 100.00 100.00 99.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.54 100.00 99.51 100.00 100.00 100.00 100.00 99.56 99.76 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention TMS1 chr3L + chr3L_16407594_16407902 chr3L_16407593_16407594;chr3L_16407902_16407903 chr3L_16407384_16407593;chr3L_16407903_16408056 10.67 19.01 14.61 7.78 10.67 10.34 10.42 6.04 11.23 9.30 12.50 11.69 17.74 16.95 10.71 11.54 18.97 8.75 10.39 7.76 14.93 10.00 14.93 9.09 15.79 8.93 17.27 28.99 8.61 7.03 8.18 7.25 4.52 9.86 13.89 6.25 11.05 12.00 13.51 9.21 8.12 8.47 15.94 9.22 5.49 6.82 13.39 11.88 9.09 13.08 13.76 16.13 5.88 13.75 13.51 16.38 9.40 2.93 K intron_retention bbc,I_chr2R_9376554_9377246,REI_chr2R_9379401_9381986 chr2R - chr2R_9375638_9376421 chr2R_9375637_9375638;chr2R_9376421_9376422 chr2R_9375479_9375637;chr2R_9376422_9376553 96.77 94.37 98.08 98.41 95.24 97.22 96.25 98.70 98.31 100.00 97.62 97.73 98.28 97.67 96.08 98.67 97.56 97.62 96.72 98.21 96.23 96.52 93.64 94.20 95.24 97.96 98.80 98.55 100.00 95.83 92.31 96.77 90.48 96.97 96.88 86.89 93.75 92.31 93.85 98.65 89.47 95.40 96.43 94.55 87.88 90.48 93.22 100.00 93.33 98.18 94.59 97.14 100.00 100.00 96.43 98.00 98.11 88.00 K intron_retention CG10565 chr3L - chr3L_21128006_21128463 chr3L_21128005_21128006;chr3L_21128463_21128464 chr3L_21126298_21128005;chr3L_21128464_21128609 0.00 0.00 1.16 1.35 0.00 0.00 1.28 1.28 0.71 0.00 1.15 0.95 0.00 0.00 1.04 0.99 0.00 0.00 0.00 0.65 0.00 0.60 0.00 0.00 0.72 1.60 0.84 2.39 0.00 0.00 0.57 0.00 0.00 0.42 0.00 0.00 0.00 1.29 0.69 0.00 0.90 0.35 0.00 0.00 0.00 0.00 0.00 0.00 1.26 0.00 0.95 0.00 0.00 0.00 1.08 0.88 0.00 1.01 N alternative_acceptor Moca-cyp chr3R + chr3R_24167182_24167348;chr3R_24167182_24167249;chr3R_24167182_24167906;chr3R_24167182_24167243 chr3R_24167182_24167260 chr3R_24167094_24167181;chr3R_24167907_24167936 4.76 4.76 8.82 9.62 13.04 5.41 7.69 6.56 4.17 3.85 5.88 4.84 7.14 3.45 5.26 5.26 6.90 4.17 5.56 4.21 4.55 5.88 2.82 5.77 3.23 5.00 3.45 3.12 4.35 5.56 6.92 2.08 1.65 6.35 2.13 2.13 3.08 2.33 3.23 3.41 1.96 5.56 5.00 4.84 1.92 3.45 4.35 0.98 5.80 4.88 3.17 5.71 6.06 3.03 7.69 2.13 6.82 1.35 K intron_retention Gel,RI_chr3R_62662_62721,RI_chr3R_62666_63346,I_chr3R_62933_63346,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_61047_63346 chr3R_61046_61047;chr3R_63346_63347 chr3R_61015_61046;chr3R_63347_63446 20.19 NA NA NA NA NA NA 25.00 14.29 NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA 15.38 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG8026,I_chr2R_5074640_5074701 chr2R - chr2R_5074640_5074800;chr2R_5074640_5075624 chr2R_5074640_5074701 chr2R_5074540_5074639 4.07 7.78 1.72 3.28 1.89 3.64 10.87 7.14 8.41 12.70 6.98 14.95 3.45 0.00 2.86 11.32 5.26 3.92 2.50 9.84 4.08 16.13 5.26 6.56 3.41 3.33 4.96 1.82 6.25 1.14 3.70 8.77 2.27 3.90 1.56 5.71 4.40 4.14 2.30 4.85 7.32 5.56 2.94 9.18 7.14 4.07 2.70 7.32 3.57 5.56 2.58 2.86 2.63 3.12 1.28 3.42 1.72 8.33 K alternative_acceptor RpL8,I_chr3L_2587513_2587750,I_chr3L_2587600_2587750,RI_chr3L_2587690_2587750,I_chr3L_2589746_2592161 chr3L + chr3L_2587514_2587750;chr3L_2587514_2587575 chr3L_2587514_2587717 chr3L_2587500_2587513;chr3L_2587751_2587850 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.05 0.00 0.00 0.00 0.06 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.10 0.02 0.04 0.04 0.00 0.06 0.01 0.04 0.04 0.00 0.00 0.04 0.00 0.00 0.04 0.13 0.04 0.04 0.10 0.00 0.04 0.03 0.00 K intron_retention CG18616,E_chr3R_8456526_8456606 chr3R + chr3R_8456526_8456599 chr3R_8456525_8456526;chr3R_8456599_8456600 chr3R_8456426_8456525;chr3R_8456600_8457355 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 5.26 0.00 2.27 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Su(var)3-7 chr3R + chr3R_9091023_9091462 chr3R_9091023_9091456 chr3R_9090118_9091022;chr3R_9091463_9092041 100.00 100.00 90.91 93.75 NA 100.00 100.00 94.12 100.00 NA 90.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 93.75 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 90.91 NA NA 100.00 100.00 NA 85.71 100.00 100.00 100.00 NA 100.00 100.00 93.33 100.00 NA NA 92.31 94.74 100.00 100.00 100.00 NA NA 100.00 100.00 NA 87.50 K intron_retention CG9323 chr2L - chr2L_20754938_20754992 chr2L_20754937_20754938;chr2L_20754992_20754993 chr2L_20754809_20754937;chr2L_20754993_20755265 8.42 9.09 5.00 24.32 NA 0.00 25.81 21.21 13.95 NA 0.00 11.36 4.00 0.00 17.65 5.88 NA 0.00 16.67 11.11 0.00 5.56 14.29 6.25 29.41 46.15 21.43 17.24 31.82 10.53 4.55 9.09 0.00 6.52 0.00 0.00 6.90 0.00 8.33 2.27 8.51 11.54 9.09 3.85 2.63 10.00 0.00 6.67 10.81 5.00 12.90 4.17 13.33 8.70 9.68 5.26 12.50 2.56 K cassette mfas,I_chr3R_7811954_7812017,RI_chr3R_7818607_7818970 chr3R - chr3R_7815048_7818463;chr3R_7815051_7818463;chr3R_7815246_7818463 chr3R_7815051_7817793,chr3R_7815048_7817793,chr3R_7815246_7817793;chr3R_7817866_7818463 chr3R_7817794_7817865 chr3R_7814932_7815047;chr3R_7818464_7818574 0.85 0.47 1.68 0.00 1.20 0.00 2.27 0.53 0.59 0.00 0.94 2.39 0.00 1.19 1.50 0.85 1.00 1.04 0.00 1.12 0.86 2.40 0.40 0.68 0.88 0.00 0.80 0.00 0.97 0.87 1.32 2.11 0.84 0.58 0.85 0.79 0.00 0.58 0.84 1.45 1.37 0.64 1.11 1.16 1.40 0.50 0.96 1.29 0.72 0.00 0.87 0.91 1.12 0.00 0.00 0.65 0.52 1.24 K alternative_donor CG12012,CG12014 chr3L + chr3L_3376948_3376998 chr3L_3376952_3376998 chr3L_3376999_3377656;chr3L_3376786_3376947 1.42 1.94 1.00 1.42 1.30 1.89 2.31 3.52 3.18 0.00 0.00 3.35 2.53 5.33 1.52 0.00 2.44 1.19 0.89 1.66 1.23 0.00 2.27 1.95 0.00 0.90 3.74 2.56 0.82 0.00 0.82 1.15 0.98 0.63 1.49 1.03 0.54 0.73 0.00 2.26 1.05 1.64 1.19 0.00 2.63 2.26 2.86 2.22 1.97 0.00 2.52 2.78 2.27 1.12 2.33 1.98 0.65 0.76 K intron_retention CG15118,I_chr2R_15024324_15024455 chr2R - chr2R_15024582_15024628 chr2R_15024581_15024582;chr2R_15024628_15024629 chr2R_15024456_15024581;chr2R_15024629_15024653 100.00 100.00 95.83 100.00 94.74 100.00 96.30 100.00 100.00 NA 100.00 100.00 94.44 100.00 100.00 95.83 100.00 100.00 100.00 98.11 100.00 100.00 100.00 93.33 100.00 96.15 100.00 NA 100.00 100.00 100.00 92.86 100.00 95.45 NA NA 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 96.30 100.00 100.00 100.00 K alternative_donor RpL15 chr3LHet + chr3LHet_2397859_2398049;chr3LHet_2397820_2398049 chr3LHet_2397992_2398049 chr3LHet_2398050_2398052;chr3LHet_2397802_2397819 88.89 100.00 100.00 71.93 75.00 91.67 97.67 82.05 97.14 69.23 83.33 91.67 100.00 95.24 87.50 89.36 90.00 87.50 82.35 91.30 85.71 80.85 90.91 100.00 100.00 91.67 100.00 60.87 75.00 88.89 68.09 52.38 69.23 80.00 90.91 90.00 88.89 80.00 100.00 52.54 61.29 68.97 90.91 60.00 76.47 78.79 90.00 62.16 82.61 100.00 100.00 100.00 36.36 88.89 90.91 93.33 100.00 53.33 K alternative_donor CG15625 chr2L + chr2L_4890368_4890428 chr2L_4890372_4890428 chr2L_4890429_4891378;chr2L_4889995_4890367 0.91 0.00 NA 5.56 NA 5.88 0.00 3.03 0.00 NA NA 0.00 NA NA NA 0.00 NA 0.00 NA 0.00 NA 10.00 0.00 6.06 0.00 NA 5.71 19.23 10.00 0.00 5.71 0.00 0.00 4.35 0.00 7.14 2.70 0.00 1.82 0.00 6.25 0.00 NA 3.85 3.70 3.45 5.26 4.55 4.00 0.00 2.94 NA 4.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7206 chrX - chrX_17983958_17984015 chrX_17983957_17983958;chrX_17984015_17984016 chrX_17983328_17983957;chrX_17984016_17984270 57.14 57.14 61.54 75.00 53.33 57.14 58.62 62.16 52.17 62.50 52.63 63.16 88.89 70.00 61.29 55.17 46.67 63.64 71.43 53.85 76.47 39.39 63.89 50.00 63.64 66.67 63.64 66.67 45.00 44.00 34.15 44.00 60.53 65.52 59.09 51.72 52.00 52.63 52.38 61.36 61.11 71.05 57.14 56.52 55.56 48.72 40.00 57.14 58.97 63.64 53.85 68.75 52.94 52.00 66.67 47.06 65.00 44.00 K intron_retention lig3 chr3R - chr3R_8226161_8226248 chr3R_8226160_8226161;chr3R_8226248_8226249 chr3R_8224994_8226160;chr3R_8226249_8227041 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 4.26 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 4.00 0.00 5.71 0.00 0.00 0.00 NA 0.00 3.77 0.00 0.00 0.00 NA 0.00 4.35 8.33 8.33 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.44 0.00 0.00 0.00 0.00 3.85 3.12 2.56 NA 0.00 NA 0.00 4.55 0.00 0.00 K intron_retention CG5757,E_chr2R_13981576_13981669,RI_chr2R_13982037_13982093,RI_chr2R_13982244_13982295 chr2R - chr2R_13982037_13982088 chr2R_13982036_13982037;chr2R_13982088_13982089 chr2R_13981970_13982036;chr2R_13982089_13982153 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 5.26 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 K alternative_donor Mvl,I_chr3R_16884191_16886355 chr3R - chr3R_16884191_16886003 chr3R_16884191_16885988 chr3R_16884091_16884190;chr3R_16886004_16886210 3.58 0.00 0.00 6.06 4.35 0.00 4.00 0.00 2.33 0.00 4.76 5.26 4.76 0.00 4.76 4.35 NA 4.76 0.00 7.69 3.70 6.25 5.56 0.00 0.00 5.26 4.35 9.09 7.69 4.35 0.00 0.00 0.00 5.41 0.00 3.70 0.00 0.00 4.76 4.65 0.00 0.00 0.00 0.00 0.00 7.69 5.56 7.14 3.45 0.00 0.00 0.00 0.00 NA 0.00 NA 5.56 3.85 K jcn_only_AD simj,I_chr3L_10680263_10680313 chr3L + chr3L_10681881_10682025 chr3L_10681944_10682025 chr3L_10682026_10682480;chr3L_10681791_10681880 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Imp,I_chrX_10699490_10700695,RI_chrX_10699665_10700501,RI_chrX_10699665_10700695 chrX - chrX_10699665_10700474;chrX_10699665_10700695 chrX_10699665_10700501 chrX_10699565_10699664;chrX_10700696_10700795 62.50 40.00 57.14 64.29 NA 66.67 64.00 76.92 75.86 NA 62.50 57.89 46.67 81.82 77.78 79.17 78.57 66.67 42.86 45.45 40.00 NA 40.00 NA NA 14.29 71.43 NA NA NA 88.89 NA NA 56.52 NA NA NA NA NA NA NA 72.73 70.00 NA NA NA NA 40.00 60.87 NA 60.00 NA NA NA 42.86 NA NA NA K intron_retention Vha100-1,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24963009_24963073 chr3R_24963008_24963009;chr3R_24963073_24963074 chr3R_24962804_24963008;chr3R_24963074_24963245 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA RpL5,I_chr2L_22427822_22428348,psnoRNA:RpL5-a,F_chr2L_22428392_22428525,I_chr2L_22428750_22428846 chr2L - chr2L_22427796_22428348 chr2L_22427822_22428348 chr2L_22428349_22428391;chr2L_22427722_22427795 0.01 0.02 0.01 0.01 0.00 0.01 0.00 0.01 0.02 0.03 0.00 0.01 0.01 0.03 0.00 0.01 0.01 0.02 0.01 0.01 0.00 0.01 0.02 0.01 0.02 0.02 0.01 0.21 0.04 0.02 0.01 0.01 0.02 0.01 0.01 0.01 0.00 0.00 0.01 0.02 0.01 0.01 0.02 0.02 0.01 0.02 0.01 0.01 0.01 0.02 0.01 0.00 0.01 0.01 0.01 0.01 0.02 0.01 K intron_retention I_chr2R_17497464_17498249,clt chr2R - chr2R_17505896_17505958 chr2R_17505895_17505896;chr2R_17505958_17505959 chr2R_17504529_17505895;chr2R_17505959_17506182 0.00 0.00 NA 5.26 NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA 5.56 NA NA NA 0.00 NA 4.35 0.00 NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 2.70 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA 0.00 12.00 K intron_retention Cyp6v1 chrX + chrX_20531671_20532004 chrX_20531670_20531671;chrX_20532004_20532005 chrX_20530852_20531670;chrX_20532005_20532410 63.16 NA NA 83.33 NA NA NA NA 57.89 NA NA 66.67 53.85 NA NA NA NA NA NA 63.16 NA 71.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA Amun,I_chrX_11607839_11608272,I_chrX_11607842_11608105,I_chrX_11607842_11608125,RI_chrX_11607842_11608272 chrX - chrX_11607839_11608507 chrX_11607842_11608507 chrX_11608508_11608588;chrX_11607788_11607838 70.19 90.91 54.55 74.36 76.19 NA 75.00 84.09 66.67 NA 65.00 79.07 NA NA 74.29 87.50 68.18 NA NA 73.81 NA 80.00 60.00 78.26 NA 65.52 70.00 NA 63.89 65.52 65.22 NA 69.77 68.89 NA 64.29 59.26 78.26 70.00 73.08 44.83 65.22 78.26 71.43 67.74 63.41 83.33 79.03 67.21 73.08 NA 68.18 NA 70.37 78.79 67.65 77.78 79.63 K intron_retention blue,I_chr3L_14040891_14040953 chr3L - chr3L_14038500_14038555 chr3L_14038499_14038500;chr3L_14038555_14038556 chr3L_14038389_14038499;chr3L_14038556_14038856 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA 23.53 0.00 NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA NA 4.35 K intron_retention tlk chrX + chrX_3674723_3675687 chrX_3674722_3674723;chrX_3675687_3675688 chrX_3674705_3674722;chrX_3675688_3677592 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA K cassette SWAP,RI_chrX_936466_936762,I_chrX_936466_936835,RI_chrX_936919_937245,RI_chrX_938935_938985,I_chrX_941459_982652 chrX + chrX_936466_937245 chrX_936466_936835;chrX_936919_937245 chrX_936836_936918 chrX_936366_936465;chrX_937246_937345 10.71 10.53 12.50 18.75 14.29 5.88 NA 18.75 15.38 NA NA 10.71 NA NA NA NA NA NA NA 10.53 NA NA 18.75 5.26 NA NA 7.69 NA 17.65 4.76 20.00 16.67 9.76 17.39 NA 7.14 0.00 6.67 6.25 10.71 29.41 11.11 NA NA NA 5.56 5.88 11.76 8.33 10.53 15.79 NA NA NA 18.18 14.29 NA 7.14 K intron_retention key,I_chr2R_20674247_20674291,I_chr2R_20674567_20674813,I_chr2R_20674654_20674897,RI_chr2R_20676692_20676888 chr2R - chr2R_20673207_20673264 chr2R_20673206_20673207;chr2R_20673264_20673265 chr2R_20673138_20673206;chr2R_20673265_20673618 3.23 3.23 2.86 5.50 3.85 1.32 5.26 2.50 5.51 3.33 0.00 3.95 0.00 0.00 2.88 5.93 5.45 3.49 3.61 3.02 1.47 1.90 5.08 10.14 5.00 3.92 21.05 2.56 4.44 2.83 3.70 2.08 3.23 5.65 3.19 3.09 2.56 0.00 7.53 2.44 2.99 5.70 0.00 0.00 2.75 2.84 8.05 1.67 3.87 3.90 6.25 0.00 2.04 2.17 7.34 4.08 5.31 1.70 K intron_retention RpL35,I_chrX_5566913_5567030,I_chrX_5567168_5567220 chrX + chrX_5566556_5567030 chrX_5566555_5566556;chrX_5567030_5567031 chrX_5566554_5566555;chrX_5567031_5567130 2.23 6.17 1.57 1.03 2.56 2.22 6.85 1.88 2.23 2.56 2.29 2.60 1.52 1.72 2.23 1.25 1.80 2.34 2.19 1.57 0.00 2.29 5.33 3.61 5.36 2.86 14.00 5.22 9.30 1.44 5.03 1.80 0.93 1.75 2.04 3.12 3.12 0.00 3.23 0.51 1.55 3.04 2.15 1.37 1.19 1.79 3.06 1.51 4.32 7.50 12.00 3.80 1.03 6.90 2.73 1.90 3.70 0.89 K intron_retention CG15100 chr2R - chr2R_14736712_14736769 chr2R_14736711_14736712;chr2R_14736769_14736770 chr2R_14736607_14736711;chr2R_14736770_14737605 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RhoGEF3,I_chr3L_298140_298220 chr3L + chr3L_302302_302359 chr3L_302301_302302;chr3L_302359_302360 chr3L_301758_302301;chr3L_302360_302522 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 6.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA Moca-cyp chr3R + chr3R_24167182_24167348;chr3R_24167182_24167906;chr3R_24167182_24167243;chr3R_24167182_24167260 chr3R_24167182_24167249 chr3R_24167094_24167181;chr3R_24167907_24167936 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 8.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 10.48 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 12.05 K jcn_only_AA PP2A-B',I_chr3R_13997426_13997884 chr3R + chr3R_13997426_13997884;chr3R_13997426_13998847 chr3R_13997426_14001054 chr3R_13997326_13997425 98.48 100.00 97.73 100.00 100.00 97.87 98.44 98.95 100.00 98.63 98.25 99.07 93.62 97.78 100.00 97.62 100.00 97.96 95.45 94.26 96.36 96.20 98.62 100.00 100.00 94.00 96.51 100.00 97.62 100.00 80.56 97.78 95.24 96.81 99.01 100.00 98.48 99.22 99.29 97.94 98.46 100.00 95.12 97.50 98.65 98.65 99.25 100.00 99.26 97.80 96.70 100.00 98.46 98.65 96.23 98.86 97.75 100.00 K alternative_acceptor nAcRbeta-21C chr2L + chr2L_545307_545370 chr2L_545307_545348 chr2L_545131_545306;chr2L_545371_545564 1.29 0.81 0.61 0.00 0.00 0.00 1.35 0.00 1.23 5.21 0.68 0.71 1.04 0.00 0.72 1.38 0.79 0.89 0.68 0.38 1.76 7.35 2.12 2.65 0.72 0.00 2.84 6.12 4.48 3.67 2.61 1.36 2.00 0.65 1.71 1.45 2.30 1.86 1.30 3.12 2.05 0.59 0.56 4.55 2.05 1.65 1.29 1.28 0.44 3.80 1.81 0.95 1.51 1.04 1.33 1.10 0.59 0.83 K intron_retention bin3,EI_chr2R_2108782_2120760 chr2R + chr2R_2121813_2122273 chr2R_2121812_2121813;chr2R_2122273_2122274 chr2R_2121035_2121812;chr2R_2122274_2123564 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.81 0.00 4.76 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 1.32 0.00 4.41 1.98 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.46 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.80 1.54 0.00 1.82 0.00 0.00 0.00 0.00 2.63 2.35 K jcn_only_AA Lasp,I_chr3L_16671761_16673911,R_chr3L_16672970_16673911,RI_chr3L_16674471_16704042 chr3L - chr3L_16673033_16673911;chr3L_16672970_16673911 chr3L_16672574_16673911 chr3L_16673912_16674011;chr3L_16671908_16672573 0.00 0.00 0.00 0.00 0.38 0.83 0.00 0.00 0.14 0.23 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.15 0.40 0.00 0.07 0.00 0.28 0.00 0.12 0.26 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.20 0.33 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 N cassette Cip4,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4327918_4338066 chr3L_4327918_4336268;chr3L_4336320_4338066 chr3L_4336269_4336319 chr3L_4327773_4327917;chr3L_4338067_4338182 100.00 100.00 100.00 100.00 100.00 100.00 68.10 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 82.05 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD sdk,I_chrX_581050_581605,I_chrX_581108_581660,I_chrX_625220_634459,I_chrX_636395_636562 chrX + chrX_581160_581605;chrX_581043_581605;chrX_581108_581605 chrX_580974_581605 chrX_581606_581705;chrX_580950_580973 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N cassette CG32529 chrX + chrX_19781526_19794648 chrX_19781526_19793044;chrX_19794006_19794648 chrX_19793045_19794005 chrX_19781512_19781525;chrX_19794649_19795521 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.66 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 89.69 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Notum chr3L + chr3L_16017020_16022370 chr3L_16017019_16017020;chr3L_16022370_16022371 chr3L_16016544_16017019;chr3L_16022371_16022764 8.39 NA NA 9.09 NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA 0.00 NA NA 5.56 28.57 NA NA NA NA NA 10.53 NA 10.00 NA NA NA NA NA 4.35 NA NA NA NA NA NA NA NA NA 0.00 K alternative_donor I_chr2R_8821104_8821171,CG13322,I_chr2R_8823775_8823829 chr2R - chr2R_8823766_8823829;chr2R_8823766_8823815 chr2R_8823766_8823817 chr2R_8823675_8823765;chr2R_8823830_8823929 28.57 22.22 NA 26.09 27.27 NA 28.57 48.28 38.64 NA 37.50 30.00 19.05 14.29 33.33 38.89 NA 18.75 27.78 28.57 40.00 23.53 31.25 21.74 NA 22.73 33.33 13.33 33.33 38.89 42.11 22.22 32.00 29.17 27.78 35.00 21.74 NA 43.75 18.18 NA 33.33 23.08 33.33 30.77 36.36 16.67 18.75 19.23 NA 25.00 25.00 38.46 29.41 17.65 28.57 38.89 33.33 K intron_retention mrj,I_chr2R_12093585_12095708,I_chr2R_12093585_12096954,I_chr2R_12093585_12097211,I_chr2R_12093585_12097256,I_chr2R_12093585_12097522,I_chr2R_12093733_12097526,RI_chr2R_12093733_12108627,tRNA:CR30237,tRNA:CR30238,I_chr2R_12108655_12109044,I_chr2R_12108697_12109174 chr2R - chr2R_12093585_12097694 chr2R_12093584_12093585;chr2R_12097694_12097695 chr2R_12093485_12093584;chr2R_12097695_12097877 6.90 6.06 5.00 6.90 10.00 6.25 15.19 7.32 9.52 NA 6.25 5.41 10.26 9.52 4.08 6.33 13.73 5.71 8.33 5.48 8.33 0.00 14.58 12.20 9.68 8.33 11.63 40.00 0.00 12.00 5.88 NA NA 6.85 0.00 20.00 6.67 NA 0.00 6.90 NA 6.52 9.68 12.90 0.00 0.00 2.33 0.00 7.46 0.00 10.87 7.14 NA 6.67 9.80 8.70 6.67 NA K intron_retention Klc,I_chr3L_12741779_12743062,I_chr3L_12741783_12742943,I_chr3L_12741838_12743062 chr3L - chr3L_12741783_12743062 chr3L_12741782_12741783;chr3L_12743062_12743063 chr3L_12741738_12741782;chr3L_12743063_12743083 1.19 3.12 1.65 3.08 0.00 0.00 2.95 1.61 2.19 2.50 0.00 3.01 1.57 1.96 2.86 2.11 1.94 0.00 1.56 2.41 0.00 0.82 0.00 2.74 0.00 8.79 1.59 0.00 5.00 0.00 2.75 0.00 0.00 2.59 0.00 0.00 0.00 1.54 1.19 0.00 5.71 1.93 0.00 0.00 0.00 0.92 0.00 3.12 3.33 0.00 0.00 0.00 0.00 0.00 1.61 1.00 0.00 1.59 K intron_retention Msp-300,I_chr2L_5197634_5197866,noncoding_1106 chr2L + chr2L_5202804_5203115 chr2L_5202803_5202804;chr2L_5203115_5203116 chr2L_5202765_5202803;chr2L_5203116_5203261 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 2.80 0.00 0.00 0.78 0.00 1.67 0.00 0.00 3.12 0.00 2.22 1.35 5.00 0.00 1.14 0.00 0.00 0.00 0.00 2.70 0.00 4.65 0.00 0.00 0.00 1.87 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 1.20 0.00 0.00 0.00 K cassette ZnT63C chr3L + chr3L_3303853_3310519 chr3L_3303853_3304601;chr3L_3304666_3310519 chr3L_3304602_3304665 chr3L_3303840_3303852;chr3L_3310520_3310706 98.53 97.53 99.19 100.00 94.29 99.08 99.10 99.35 97.44 98.00 98.51 99.38 94.20 99.03 99.07 97.31 98.61 98.82 99.15 99.35 98.72 96.30 97.10 97.32 97.26 98.98 95.37 92.98 85.29 98.53 99.48 97.92 98.28 99.42 96.26 100.00 98.73 98.59 98.75 98.11 100.00 99.46 98.85 97.80 100.00 98.97 95.29 98.18 97.42 96.30 99.32 96.33 98.11 94.55 99.26 96.43 96.51 98.88 K cassette CG3209,I_chr2R_19957751_19959513,RI_chr2R_19957766_19960227,I_chr2R_19959163_19959513 chr2R + chr2R_19958528_19960227;chr2R_19957766_19960227 chr2R_19958528_19959513,chr2R_19957766_19959513;chr2R_19959748_19960227 chr2R_19959514_19959747 chr2R_19957666_19957765;chr2R_19960228_19960327 22.68 20.37 27.78 17.04 16.18 19.23 14.29 15.67 18.34 18.09 25.37 27.16 6.60 19.63 17.54 29.46 26.55 54.90 20.47 32.09 40.48 7.04 26.92 31.05 24.60 23.27 20.42 19.25 17.39 20.16 33.06 24.17 19.80 21.89 19.64 37.50 25.00 20.83 25.45 28.14 23.48 18.22 18.95 27.78 27.38 28.40 22.42 26.05 22.68 17.65 21.47 18.56 27.94 27.69 19.88 23.08 28.49 36.00 K jcn_only_AD CG16936,RI_chr2R_20655101_20655166,I_chr2R_20660319_20660496 chr2R - chr2R_20655101_20655161;chr2R_20655101_20655620;chr2R_20655101_20655166 chr2R_20655101_20655476 chr2R_20655001_20655100;chr2R_20655621_20655665 4.92 7.07 2.74 3.57 3.17 2.82 7.14 4.68 3.14 0.00 1.96 5.70 2.90 4.48 8.45 1.30 6.17 0.00 1.47 2.60 8.11 4.35 8.08 4.93 2.38 6.67 10.14 15.00 11.43 19.51 14.77 7.58 8.70 1.52 5.00 NA 2.34 1.08 5.61 2.55 1.79 3.74 6.98 10.42 9.73 17.39 9.38 8.22 4.93 4.46 4.92 1.16 0.00 6.58 2.44 4.76 5.26 5.48 K jcn_only_AA I_chr3L_834336_834491,CG13887,Gr61a chr3L + chr3L_837946_838048;chr3L_837946_838012 chr3L_837946_838021 chr3L_837877_837945;chr3L_838049_838624 2.38 1.96 3.70 3.25 3.70 1.85 3.11 3.36 3.61 0.00 6.00 4.85 8.89 5.66 4.17 2.82 2.50 2.00 4.84 4.00 3.33 0.00 1.96 0.00 0.00 2.56 0.00 5.00 1.54 0.00 0.00 1.23 0.00 4.86 0.00 0.00 0.00 9.76 0.00 0.78 2.13 3.60 2.08 2.47 2.38 4.29 8.33 3.27 1.91 4.76 0.00 1.49 NA NA 4.26 0.00 1.52 2.10 K cassette osa chr3R - chr3R_13520018_13521644 chr3R_13520018_13520555;chr3R_13521036_13521644 chr3R_13520556_13521035 chr3R_13519858_13520017;chr3R_13521645_13521833 12.39 13.40 7.69 8.43 11.36 5.26 4.62 5.41 16.94 20.63 3.17 11.11 7.27 7.81 10.14 6.25 6.52 15.15 9.26 7.39 6.98 51.20 16.75 19.44 22.92 13.33 12.39 19.72 13.25 14.37 5.41 13.89 21.89 10.53 15.73 17.02 23.11 21.71 20.90 7.09 14.71 13.16 6.52 16.43 28.74 13.00 13.58 10.73 10.53 7.84 12.14 14.47 12.17 15.15 12.20 14.49 9.46 9.23 K alternative_donor nudE chr3L + chr3L_9892456_9892825;chr3L_9892498_9892825 chr3L_9892375_9892825 chr3L_9892826_9893184;chr3L_9892344_9892374 0.00 14.29 0.00 6.25 NA NA 6.25 7.14 0.00 NA NA 0.00 0.00 12.50 NA 4.00 12.50 0.00 0.00 5.26 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 9.09 16.67 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA 14.29 NA NA NA 0.00 NA NA NA K alternative_donor CG15173,RI_chr2L_19044304_19044369 chr2L - chr2L_19043884_19043931;chr2L_19043884_19043935 chr2L_19043884_19043945 chr2L_19043535_19043883;chr2L_19043946_19044083 0.00 NA NA 11.11 NA NA NA NA NA NA NA 12.50 NA NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 0.00 NA NA NA NA 8.33 NA NA NA NA NA NA NA NA NA NA 9.09 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 0.00 NA K intron_retention Dscam,F_chr2R_3219886_3228832,F_chr2R_3226043_3235353,F_chr2R_3227948_3235353,F_chr2R_3228738_3235353,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3230387_3235353 chr2R_3230386_3230387;chr2R_3235353_3235354 chr2R_3230173_3230386;chr2R_3235354_3235453 90.00 NA NA NA NA NA NA 90.00 93.33 NA NA 100.00 NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA 92.86 NA NA NA NA NA NA NA NA NA K alternative_last_exon mbl,CEI_chr2R_13153717_13238598,I_chr2R_13163569_13203579 chr2R + chr2R_13163569_13183339;chr2R_13163569_13238598 chr2R_13163569_13193491 chr2R_13183340_13186065;chr2R_13238599_13238769 chr2R_13193492_13193737 chr2R_13163469_13163568 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.67 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11266,RI_chr2L_7033019_7034764,I_chr2L_7034274_7035406,I_chr2L_7051093_7051366 chr2L + chr2L_7032840_7032903 chr2L_7032839_7032840;chr2L_7032903_7032904 chr2L_7032779_7032839;chr2L_7032904_7033018 73.99 68.18 77.78 95.00 70.00 64.00 83.33 75.56 74.47 83.33 94.44 72.00 69.70 75.86 75.61 67.31 82.61 62.50 79.41 74.29 68.00 71.43 75.86 55.17 89.47 96.43 85.71 78.57 77.78 64.00 80.43 58.33 50.00 75.00 67.86 NA 60.00 70.00 77.78 56.67 93.75 78.72 76.92 65.38 69.23 60.87 58.33 73.68 75.47 54.17 74.29 56.00 66.67 58.33 82.50 64.00 60.71 78.57 K jcn_only_AA CG3744,I_chr3R_20701248_20701968 chr3R - chr3R_20701248_20701968 chr3R_20701722_20701968 chr3R_20701969_20702068;chr3R_20701148_20701247 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA 82.61 NA 100.00 97.92 NA NA NA NA NA NA NA 95.83 100.00 NA NA NA NA NA NA NA NA 100.00 K intron_retention tna chr3L + chr3L_10863694_10863817 chr3L_10863693_10863694;chr3L_10863817_10863818 chr3L_10863141_10863693;chr3L_10863818_10863979 0.00 0.00 0.00 0.00 0.00 11.11 0.00 4.55 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 6.45 0.00 0.00 0.00 0.00 0.00 3.23 0.00 3.03 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 5.56 NA 0.00 0.00 0.00 K jcn_only_AD RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522912_523360;chrX_522912_523215;chrX_522912_523414;chrX_522912_523194;chrX_522912_523389 chrX_522912_523323 chrX_522849_522911;chrX_523415_523436 0.94 2.08 1.13 0.51 0.00 1.08 1.26 0.49 0.53 1.33 0.00 0.67 1.19 0.43 1.79 1.37 0.00 0.94 1.79 0.65 0.58 0.00 1.76 1.74 0.91 0.61 1.65 1.17 1.61 0.71 1.43 0.86 0.54 0.68 0.45 1.85 1.59 1.36 1.10 0.72 0.98 0.69 0.00 1.04 0.54 0.99 2.97 0.29 0.67 3.28 2.92 0.32 0.87 2.39 0.66 3.43 1.92 0.39 N alternative_acceptor I_chr3R_16141663_16144698,CG5077,I_chr3R_16147605_16147670 chr3R + chr3R_16146174_16147197 chr3R_16146174_16147059 chr3R_16145951_16146173;chr3R_16147198_16147358 2.02 2.90 1.73 1.07 1.69 1.77 4.39 2.02 3.03 1.95 2.09 3.20 4.09 3.77 2.72 6.94 3.67 2.01 2.84 1.54 1.37 0.77 3.58 3.81 1.69 3.06 2.98 2.27 1.80 0.89 1.78 1.22 0.41 2.83 1.48 1.11 1.19 1.87 2.49 1.44 0.89 2.04 3.38 4.00 0.23 1.08 2.02 0.48 3.39 1.53 2.60 4.08 1.51 2.05 2.16 3.06 3.26 0.49 K intron_retention Atpalpha,I_chr3R_16788018_16789830,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16788018_16789446 chr3R_16788017_16788018;chr3R_16789446_16789447 chr3R_16787937_16788017;chr3R_16789447_16789578 0.00 0.00 0.00 1.16 0.00 0.00 2.33 1.58 0.00 0.00 0.00 1.26 0.00 0.96 0.00 0.61 0.00 0.00 0.00 0.66 0.00 0.41 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 1.17 0.00 0.00 0.82 0.00 0.00 0.38 0.00 1.49 0.00 0.58 0.00 0.00 0.00 0.94 2.05 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 K intron_retention CG42490,RI_chr2L_18666413_18666474,CREI_chr2L_18666629_18666680 chr2L + chr2L_18666629_18666680 chr2L_18666628_18666629;chr2L_18666680_18666681 chr2L_18666560_18666628;chr2L_18666681_18666780 35.29 41.67 42.86 NA NA NA NA 38.46 45.45 NA NA 35.00 NA 26.67 NA 50.00 NA NA 37.50 46.15 NA NA 50.00 35.29 NA NA 46.15 NA NA NA 28.57 NA NA 30.77 NA NA 25.00 NA 28.57 23.53 NA 57.89 NA NA 25.00 26.09 41.18 50.00 47.83 NA 30.77 NA 25.00 21.43 31.25 35.29 46.15 28.57 K cassette CG3680,Pka-R1 chr3L + chr3L_20805568_20805825 chr3L_20805568_20805623;chr3L_20805771_20805825 chr3L_20805624_20805770 chr3L_20805357_20805567;chr3L_20805826_20806432 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 96.30 97.73 100.00 95.45 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.21 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 97.37 100.00 100.00 100.00 K alternative_donor I_chr2R_9844856_9845327,CG13349,RI_chr2R_9846641_9846709 chr2R - chr2R_9847615_9847732;chr2R_9847615_9847823 chr2R_9847615_9847752 chr2R_9847073_9847614;chr2R_9847824_9847834 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 1.79 0.00 0.00 0.00 4.76 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 3.85 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 K intron_retention CG15514 chr3R - chr3R_25686337_25686428 chr3R_25686336_25686337;chr3R_25686428_25686429 chr3R_25685755_25686336;chr3R_25686429_25687281 19.35 28.00 12.50 18.33 21.74 19.05 25.00 15.07 19.39 24.39 15.56 25.00 12.77 17.65 14.89 18.33 19.35 10.87 24.39 18.68 13.16 21.88 22.06 16.18 23.81 22.50 23.19 21.43 22.45 26.83 16.07 16.67 8.62 20.00 22.22 25.64 23.91 28.26 15.79 30.43 17.50 18.99 14.63 20.83 18.18 19.12 20.97 20.45 15.22 17.82 23.44 19.44 23.08 19.30 16.33 16.92 18.06 21.05 K intron_retention B52,F_chr3R_9488762_9491174,E_chr3R_9488770_9491174 chr3R + chr3R_9490657_9491174 chr3R_9490656_9490657;chr3R_9491174_9491175 chr3R_9490509_9490656;chr3R_9491175_9491248 11.59 12.24 12.77 NA 17.14 20.00 15.69 19.61 14.42 7.94 13.04 6.54 14.00 14.63 20.93 12.28 7.69 11.54 21.95 15.29 9.76 8.89 10.87 14.29 11.54 3.77 12.07 17.65 6.85 9.09 3.70 8.33 10.00 12.94 13.04 7.27 11.02 14.52 11.65 12.90 8.16 11.34 20.00 10.78 10.53 10.11 10.91 10.47 12.79 10.45 10.13 18.60 7.14 13.33 10.53 6.67 22.73 12.86 K jcn_only_AA CG16718,E_chr3R_15462172_15464824,I_chr3R_15463336_15463401,RI_chr3R_15464150_15464400,EI_chr3R_15465136_15466705 chr3R - chr3R_15463336_15463401 chr3R_15463341_15463401 chr3R_15463402_15463501;chr3R_15463236_15463335 97.87 90.32 97.87 100.00 95.12 97.30 98.39 97.40 100.00 95.65 100.00 100.00 93.55 97.67 100.00 98.70 95.35 100.00 98.08 97.53 100.00 100.00 97.62 97.14 96.55 100.00 97.44 100.00 100.00 95.12 94.44 96.00 100.00 95.89 100.00 97.30 97.83 NA 100.00 98.55 97.37 99.06 97.78 97.83 96.55 98.15 100.00 96.70 96.70 NA 97.06 100.00 100.00 NA 97.92 100.00 NA 98.28 K intron_retention CG10898,I_chr3R_7384087_7384155 chr3R + chr3R_7384087_7384147 chr3R_7384086_7384087;chr3R_7384147_7384148 chr3R_7384024_7384086;chr3R_7384148_7384215 0.00 NA NA 6.25 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA K intron_retention Bmcp,RI_chr3L_11714462_11715104 chr3L + chr3L_11714565_11715104 chr3L_11714564_11714565;chr3L_11715104_11715105 chr3L_11714417_11714564;chr3L_11715105_11715204 0.00 0.00 0.00 0.00 0.00 3.23 2.50 4.65 0.00 0.00 6.25 4.17 0.00 0.00 0.00 0.00 0.00 6.67 0.00 3.57 0.00 0.00 0.00 1.79 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 1.85 0.00 0.00 0.00 0.00 2.94 0.00 6.06 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 2.94 0.00 0.00 NA K intron_retention Tcp-1eta,CG8359 chr3R + chr3R_4628728_4628800 chr3R_4628727_4628728;chr3R_4628800_4628801 chr3R_4627908_4628727;chr3R_4628801_4629124 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.33 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.21 0.00 0.00 K cassette Ect4,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8098758_8101385 chr3L_8098758_8099115;chr3L_8100050_8101385 chr3L_8099116_8100049 chr3L_8098658_8098757;chr3L_8101386_8101485 99.49 98.51 99.55 100.00 100.00 100.00 100.00 99.64 99.71 93.23 99.26 99.38 100.00 99.29 100.00 100.00 99.37 100.00 99.47 99.24 100.00 99.59 99.74 99.64 99.49 99.38 99.61 98.62 97.85 97.81 100.00 97.42 98.82 99.63 99.49 100.00 99.39 99.47 99.32 98.33 97.04 99.72 100.00 98.56 99.65 98.43 99.42 98.17 100.00 99.51 99.29 98.63 99.47 99.49 100.00 98.77 99.49 99.01 K intron_retention JhI-26,I_chr2R_12177114_12177266 chr2R + chr2R_12178257_12178432 chr2R_12178256_12178257;chr2R_12178432_12178433 chr2R_12177457_12178256;chr2R_12178433_12178520 1.16 0.00 0.00 2.30 2.60 3.03 0.40 1.48 1.53 1.92 0.00 2.08 3.39 3.03 2.22 3.30 0.00 0.00 1.14 0.00 0.00 2.27 0.00 1.64 1.03 0.00 2.80 0.62 1.16 2.30 0.69 1.79 0.00 0.00 1.39 1.75 0.00 0.00 1.28 0.62 0.62 1.42 0.00 1.10 0.00 1.40 1.60 0.00 0.00 2.03 3.70 1.20 0.00 2.11 2.27 1.90 0.53 0.00 K intron_retention jumu,chr3R_6177148_6177654.0 chr3R + chr3R_6176310_6183820 chr3R_6176309_6176310;chr3R_6183820_6183821 chr3R_6175849_6176309;chr3R_6183821_6185620 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 3.12 0.00 0.00 NA 0.00 0.00 NA 0.00 K mutually_exclusive fog,I_chrX_22231114_22234174,I_chrX_22231114_22237956,I_chrX_22231114_22238023,I_chrX_22246738_22255641,RE_chrX_22256169_22256990 chrX - chrX_22231114_22255642,chrX_22256169_22256878 chrX_22231114_22246594,chrX_22246738_22256878 chrX_22255643_22256168 chrX_22246595_22246737 chrX_22231014_22231113;chrX_22256879_22256918 66.67 50.00 NA 80.00 NA NA 40.00 83.33 75.00 NA NA 75.00 60.00 62.50 NA 77.78 66.67 NA 75.00 54.55 50.00 75.00 NA NA 0.00 NA NA NA 0.00 50.00 66.67 66.67 66.67 33.33 NA NA NA NA NA 60.00 NA 50.00 75.00 NA NA 75.00 NA 80.00 66.67 66.67 NA NA NA NA 66.67 NA NA 60.00 K jcn_only_AD sdt,CRE_chrX_8126944_8129624,I_chrX_8131684_8131842 chrX + chrX_8122132_8129621 chrX_8126940_8129621 chrX_8129622_8129853 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 1.09 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 3.33 0.00 2.86 0.00 0.00 0.00 2.63 2.78 0.00 0.00 NA 0.00 0.00 0.00 14.29 0.00 0.00 0.00 3.33 0.00 0.00 2.53 0.00 0.00 2.86 0.00 0.00 5.56 0.00 4.17 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.88 K alternative_last_exon Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_137345_137445;chr4_137257_137445 chr4_136631_137445 chr4_137276_137344;chr4_136944_137256 chr4_136213_136630 chr4_137446_139127 100.00 100.00 100.00 70.00 100.00 100.00 84.21 92.00 95.00 100.00 100.00 100.00 NA 100.00 100.00 91.67 100.00 100.00 100.00 91.67 NA 100.00 100.00 85.71 100.00 90.91 100.00 NA 90.91 100.00 100.00 100.00 85.71 91.67 100.00 90.00 100.00 100.00 100.00 100.00 100.00 93.75 90.00 100.00 100.00 90.91 100.00 100.00 88.24 100.00 100.00 100.00 100.00 NA 100.00 100.00 88.89 100.00 K intron_retention CG1890,CG1896,I_chr3R_27573809_27574675 chr3R + chr3R_27569560_27569614 chr3R_27569559_27569560;chr3R_27569614_27569615 chr3R_27569187_27569559;chr3R_27569615_27569990 0.00 0.00 0.32 0.51 0.00 0.00 0.00 0.50 0.40 0.00 0.00 0.72 0.00 0.71 0.00 0.00 0.96 0.00 0.42 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.48 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.47 0.00 0.35 0.28 0.00 0.00 0.80 0.47 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 K alternative_donor CG12753,CG14894,RI_chr3R_12268071_12268135,RI_chr3R_12268071_12268141,RI_chr3R_12268071_12268661,Pak3 chr3R - chr3R_12268071_12268661;chr3R_12268071_12268145;chr3R_12268071_12268124;chr3R_12268071_12268135 chr3R_12268071_12268141 chr3R_12267971_12268070;chr3R_12268662_12268688 2.60 1.67 3.51 2.63 2.17 1.96 1.64 1.41 1.82 3.45 4.35 2.22 2.78 2.22 1.47 3.08 2.50 3.51 1.96 3.28 4.26 4.55 1.33 1.25 4.65 1.75 3.45 3.23 6.35 1.89 2.78 2.41 2.52 4.00 1.92 8.62 2.56 1.72 2.82 2.94 2.60 4.42 4.55 3.77 2.80 2.70 4.35 1.09 1.05 4.17 1.39 2.38 4.05 2.94 1.56 2.53 2.14 0.63 K alternative_donor CEI_chrX_17177009_17196871,CG5445,I_chrX_17196752_17196871,RI_chrX_17196772_17196871,I_chrX_17196820_17196875,I_chrX_17198393_17198730 chrX + chrX_17196681_17196871;chrX_17196546_17196871;chrX_17196541_17196871;chrX_17196617_17196871 chrX_17196820_17196871 chrX_17196872_17196971;chrX_17196536_17196540 84.21 91.67 80.00 66.67 77.78 75.00 90.91 61.54 62.50 85.71 54.55 81.25 80.00 75.00 66.67 75.00 66.67 66.67 81.82 55.17 66.67 76.47 93.33 87.50 100.00 77.78 92.31 84.62 93.75 83.33 90.00 80.00 75.00 66.67 90.00 88.89 93.75 100.00 92.86 90.91 90.00 68.00 70.00 90.00 78.57 92.31 93.33 85.00 70.00 87.50 87.50 100.00 91.67 90.00 81.82 92.31 100.00 84.21 K intron_retention Cnx99A,I_chr3R_25142581_25142644,I_chr3R_25144335_25145173,I_chr3R_25145243_25145309,I_chr3R_25145256_25145426 chr3R - chr3R_25142583_25142644 chr3R_25142582_25142583;chr3R_25142644_25142645 chr3R_25142442_25142582;chr3R_25142645_25142744 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.22 0.00 0.00 0.00 K intron_retention CG3074,I_chr2R_18079355_18080538,I_chr2R_18079355_18089994,snoRNA:Or-CD1,I_chr2R_18088824_18089994 chr2R - chr2R_18079361_18080538 chr2R_18079360_18079361;chr2R_18080538_18080539 chr2R_18079167_18079360;chr2R_18080539_18080638 0.00 NA 0.00 5.00 0.00 0.00 4.76 0.00 6.38 NA 14.29 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 6.25 NA 17.86 0.00 0.00 NA NA 8.33 0.00 0.00 0.00 2.13 0.00 3.85 0.00 7.14 NA 0.00 7.14 0.00 0.00 0.00 4.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 NA NA NA 4.35 0.00 6.25 NA K alternative_donor CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042888_5042960;chr2L_5042888_5042983 chr2L_5042888_5043077 chr2L_5042835_5042887;chr2L_5043078_5043083 5.00 0.00 0.00 4.76 5.26 5.00 2.00 10.87 8.96 0.00 17.39 7.94 25.00 7.14 6.25 5.45 4.35 4.76 6.45 8.00 4.00 0.00 12.90 3.85 5.56 3.70 3.33 6.25 16.67 4.76 3.57 7.14 0.00 3.92 5.26 5.56 3.23 5.26 0.00 3.03 0.00 2.08 8.70 0.00 0.00 6.90 11.11 5.26 5.45 5.56 0.00 4.76 5.00 5.26 10.81 4.35 10.34 0.00 K alternative_acceptor ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13418952_13419022 chr2R_13418967_13419022 chr2R_13419023_13419122;chr2R_13418852_13418951 98.00 97.22 100.00 98.08 96.30 97.06 97.67 100.00 98.67 94.44 96.55 98.28 100.00 96.30 100.00 97.30 100.00 97.22 96.15 96.61 100.00 97.67 100.00 100.00 96.30 100.00 97.14 84.62 95.65 96.97 96.55 94.44 95.65 100.00 100.00 96.97 98.00 96.55 98.04 97.83 100.00 98.44 100.00 96.30 95.65 100.00 100.00 94.12 100.00 95.65 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 K cassette babo chr2R + chr2R_4842357_4846611 chr2R_4842357_4844533;chr2R_4844662_4846611 chr2R_4844534_4844661 chr2R_4842239_4842356;chr2R_4846612_4846839 39.45 27.27 57.14 33.33 23.08 35.00 65.85 44.83 47.22 33.33 40.00 88.24 20.00 58.33 63.64 63.16 73.33 46.15 50.00 82.76 61.54 20.00 46.15 37.04 44.44 33.33 34.62 12.50 23.08 23.81 25.00 NA 33.33 52.63 45.45 35.71 26.92 40.00 27.59 38.89 NA 38.89 47.06 34.48 50.00 45.45 30.00 29.41 48.65 29.41 32.14 21.05 NA NA 42.11 55.56 77.78 NA K intron_retention CG11357,C_chr3L_4563905_4578759 chr3L + chr3L_4545362_4551001 chr3L_4545361_4545362;chr3L_4551001_4551002 chr3L_4545293_4545361;chr3L_4551002_4551938 78.23 NA NA 81.82 NA NA 90.00 45.00 68.18 NA 75.00 92.31 88.89 NA NA 76.47 72.73 100.00 NA 60.00 66.67 NA NA NA NA NA 80.00 81.82 88.89 NA NA NA NA 64.29 NA NA 90.00 NA 70.00 87.50 NA 83.33 NA NA NA NA NA NA 52.94 NA NA NA NA NA 60.00 NA NA NA K intron_retention CG32428 chr3L - chr3L_20463085_20464053 chr3L_20463084_20463085;chr3L_20464053_20464054 chr3L_20462772_20463084;chr3L_20464054_20464246 94.00 97.50 97.14 97.92 95.83 96.55 100.00 96.23 98.11 84.00 95.45 97.83 95.45 96.43 97.44 94.00 96.00 96.77 97.30 98.81 100.00 93.10 93.33 90.48 100.00 92.86 87.50 87.50 91.67 86.21 88.24 79.31 83.72 92.00 90.91 100.00 94.87 92.31 95.12 92.98 86.21 88.89 95.24 80.56 87.50 91.43 96.67 86.67 100.00 78.12 87.80 100.00 96.67 87.50 89.47 94.74 92.50 86.36 K intron_retention CG18490,I_chr3L_11209088_11209685,CG34240 chr3L + chr3L_11221189_11222212 chr3L_11221188_11221189;chr3L_11222212_11222213 chr3L_11220916_11221188;chr3L_11222213_11222655 3.17 2.86 2.44 9.26 0.00 16.67 10.00 1.72 6.67 NA 2.70 6.78 NA 0.00 6.45 4.65 9.09 2.94 3.12 3.70 6.90 9.09 6.98 0.00 0.00 0.00 10.53 NA 0.00 6.90 0.00 0.00 0.00 1.92 NA 0.00 6.67 12.50 0.00 12.24 0.00 3.39 NA 2.38 2.17 3.85 4.00 9.38 5.77 3.23 5.41 0.00 0.00 4.76 0.00 0.00 3.45 0.00 K alternative_acceptor I_chr3R_8822346_8822403,CG7518 chr3R + chr3R_8825247_8825316 chr3R_8825247_8825304 chr3R_8825163_8825246;chr3R_8825317_8825382 49.06 51.11 54.35 46.48 42.50 45.16 52.05 47.31 52.14 39.13 42.86 48.35 50.00 43.18 41.18 51.95 59.18 48.84 38.78 48.75 58.82 50.00 62.32 47.69 71.43 56.52 40.00 46.67 73.91 50.00 56.25 36.84 53.19 48.65 41.03 52.63 58.82 50.00 45.68 49.06 52.94 51.28 45.00 52.83 50.00 52.00 46.88 52.00 53.66 48.48 47.62 48.57 46.15 40.00 53.06 44.00 55.00 35.29 K alternative_donor Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4833364_4834454;chrX_4833203_4834454;chrX_4833308_4834454;chrX_4833338_4834454 chrX_4833234_4834454 chrX_4834455_4834880;chrX_4833197_4833202 73.87 83.33 57.14 80.00 80.00 NA 77.78 81.25 67.65 62.50 NA 60.00 63.64 77.78 71.43 50.00 72.73 100.00 64.29 75.00 NA 55.56 NA NA NA NA NA NA NA 77.78 54.55 NA 83.33 63.16 NA NA 100.00 NA NA 100.00 50.00 82.35 71.43 NA NA NA NA 75.00 61.11 NA NA NA NA NA 75.00 NA NA NA K alternative_donor CG4699 chr3R + chr3R_11624200_11624445;chr3R_11624133_11624445;chr3R_11624127_11624445 chr3R_11624190_11624445 chr3R_11624446_11624758;chr3R_11623809_11624126 32.50 32.50 40.00 42.19 29.27 33.33 23.64 8.62 15.00 48.08 25.00 36.62 36.11 27.03 9.43 34.21 29.73 25.00 35.56 17.24 35.29 35.54 35.71 27.42 33.33 21.95 38.18 35.71 27.27 9.41 38.64 20.69 27.54 16.39 30.51 40.35 42.03 36.17 35.82 44.44 48.57 25.00 47.50 15.09 44.68 36.36 43.24 19.87 45.74 36.00 30.61 31.25 23.26 21.88 23.08 18.92 38.24 19.01 N alternative_acceptor noncoding_14363 chr3LHet - chr3LHet_709127_709194;chr3LHet_709103_709194 chr3LHet_709113_709194 chr3LHet_709195_709261;chr3LHet_709044_709102 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 93.33 100.00 100.00 100.00 NA 100.00 100.00 95.89 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 K alternative_donor CG11652,I_chr3L_11688679_11688728 chr3L - chr3L_11688679_11689514 chr3L_11688679_11689450 chr3L_11688579_11688678;chr3L_11689515_11689841 36.60 33.33 36.84 63.64 29.41 NA 46.88 50.00 45.45 NA NA 41.18 40.00 41.67 36.36 38.71 30.77 35.71 30.00 39.29 30.00 30.00 NA 40.00 NA 28.57 30.00 NA NA NA 30.77 NA NA 42.86 NA NA 40.00 55.56 25.00 28.57 NA 35.48 38.89 26.67 NA NA NA NA 44.00 NA 38.46 35.71 NA NA 29.41 NA NA NA K intron_retention CG5199,RI_chr3L_20445700_20445776 chr3L - chr3L_20445700_20445772 chr3L_20445699_20445700;chr3L_20445772_20445773 chr3L_20445600_20445699;chr3L_20445773_20445946 18.35 NA NA 33.33 NA NA 38.46 25.00 19.05 NA NA 10.53 NA NA 12.50 14.29 NA NA NA 25.00 NA 58.82 23.53 0.00 NA NA 33.33 35.71 50.00 NA NA 27.78 33.33 15.38 13.33 4.76 25.00 NA 25.00 15.56 25.00 20.00 NA NA NA 10.00 NA 17.65 13.04 15.38 0.00 NA 13.33 6.67 NA NA NA 10.53 K alternative_donor Aldolase,I_chr3R_22083764_22086684,I_chr3R_22086804_22086875 chr3R - chr3R_22083764_22087057;chr3R_22083764_22086875 chr3R_22083764_22086879 chr3R_22083664_22083763;chr3R_22087058_22087313 0.30 0.31 0.00 0.45 0.00 0.37 0.51 0.69 0.13 0.21 0.58 0.74 0.48 0.00 0.30 0.53 0.00 0.30 0.31 0.51 0.33 0.00 0.21 0.43 0.00 0.00 0.00 0.00 0.24 0.29 0.24 0.47 0.00 0.00 0.49 0.43 0.18 0.21 0.25 0.23 0.46 0.50 0.00 0.27 0.00 0.35 0.00 0.58 1.00 0.37 0.00 0.00 0.51 1.03 0.47 0.65 0.52 0.60 K alternative_acceptor Edem1,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1798310_1798525 chrX_1798315_1798525 chrX_1798526_1798625;chrX_1798215_1798309 97.14 100.00 100.00 96.55 94.12 100.00 100.00 96.88 97.73 90.91 94.44 97.62 95.00 100.00 100.00 100.00 95.45 100.00 95.65 97.96 95.45 92.86 97.14 96.30 100.00 95.24 93.33 92.31 100.00 95.24 100.00 100.00 100.00 96.55 92.31 95.45 96.77 100.00 96.43 97.50 100.00 97.14 100.00 100.00 100.00 100.00 97.73 87.50 97.06 100.00 96.55 100.00 100.00 96.88 96.15 96.67 97.06 93.75 K intron_retention CG7638,RI_chr3L_11104220_11104524 chr3L + chr3L_11104463_11104524 chr3L_11104462_11104463;chr3L_11104524_11104525 chr3L_11104288_11104462;chr3L_11104525_11104624 0.00 0.00 0.00 0.00 2.38 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 K intron_retention CG1832,I_chr2L_22168644_22168740 chr2L - chr2L_22167577_22167636 chr2L_22167576_22167577;chr2L_22167636_22167637 chr2L_22167303_22167576;chr2L_22167637_22168066 0.00 0.00 0.00 0.39 0.00 0.00 0.00 1.15 0.23 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.12 5.23 1.16 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 N cassette betaTub97EF chr3R - chr3R_23794914_23798642;chr3R_23794914_23795381 chr3R_23794914_23795104;chr3R_23795273_23798642,chr3R_23795273_23795381 chr3R_23795105_23795272 chr3R_23794649_23794913;chr3R_23798643_23798872 0.52 0.47 0.00 0.78 0.00 0.81 0.47 0.00 0.73 0.00 0.70 0.75 0.85 0.73 0.59 0.52 0.77 0.00 1.57 0.33 0.00 1.04 0.40 0.35 0.00 0.78 0.87 1.60 0.00 0.00 0.00 1.23 3.03 0.44 0.00 0.72 0.00 0.00 0.29 0.96 1.32 0.00 0.83 0.00 0.69 0.63 0.00 1.47 0.82 0.76 0.35 0.00 1.17 0.97 1.64 0.43 0.32 0.00 K intron_retention cana,cana_CG33695 chr2L + chr2L_11270645_11270697 chr2L_11270644_11270645;chr2L_11270697_11270698 chr2L_11270468_11270644;chr2L_11270698_11271533 0.00 NA 0.00 8.00 NA NA 0.00 5.56 0.00 NA NA 0.00 NA NA 0.00 6.67 NA NA NA 3.85 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 9.09 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 10.71 NA 11.76 NA NA NA 0.00 NA NA NA K jcn_only_AA CG9422,I_chr2R_2584435_2585553 chr2R + chr2R_2579331_2579393 chr2R_2579331_2579386 chr2R_2579262_2579330;chr2R_2579394_2579436 93.36 NA 100.00 NA 90.91 100.00 100.00 95.00 92.11 NA NA 93.62 NA NA NA 97.44 NA NA NA 97.37 NA NA 89.29 93.10 NA 95.45 90.00 NA NA NA 88.57 88.00 NA 96.77 NA 86.96 95.83 96.00 95.65 90.91 NA 94.59 NA NA 100.00 93.02 84.85 82.61 93.02 92.11 85.00 95.65 93.94 88.89 100.00 91.67 94.64 92.00 K alternative_acceptor Fibp,RI_chr3L_19810268_19810326 chr3L - chr3L_19809762_19809819;chr3L_19809780_19809819 chr3L_19809775_19809819 chr3L_19809820_19809920;chr3L_19809693_19809761 3.45 0.00 5.56 4.88 0.00 4.35 4.17 0.00 3.12 NA 5.88 3.33 NA 0.00 10.00 0.00 0.00 6.67 3.23 3.45 NA 0.00 9.09 0.00 14.29 0.00 3.57 NA 8.33 NA 9.38 5.26 0.00 0.00 NA 5.26 4.55 0.00 3.23 7.41 11.76 5.41 7.69 6.67 0.00 2.70 5.56 3.45 2.78 3.45 8.00 0.00 NA 5.56 0.00 3.45 2.63 3.70 K alternative_donor CG6707 chr3L - chr3L_9891303_9891622 chr3L_9891303_9891543 chr3L_9891029_9891302;chr3L_9891623_9891693 0.68 0.00 0.00 4.05 1.82 3.12 4.17 0.00 2.92 0.00 2.13 3.70 2.94 0.00 2.17 4.65 2.08 5.71 0.00 2.86 1.89 0.00 0.00 2.27 0.00 9.38 3.23 0.00 2.86 0.00 2.70 4.35 5.26 2.99 0.00 0.00 2.56 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 NA 2.13 0.00 2.00 2.50 K intron_retention kappaB-Ras,CG30503 chr2R - chr2R_3333023_3333086 chr2R_3333022_3333023;chr2R_3333086_3333087 chr2R_3331854_3333022;chr2R_3333087_3333248 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette ssp4,I_chr2R_13409412_13410357,RI_chr2R_13409412_13411004,I_chr2R_13409412_13411328,I_chr2R_13409412_13411588,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13408434_13411588 chr2R_13408434_13410357;chr2R_13410466_13411004;chr2R_13411077_13411588 chr2R_13410358_13410465;chr2R_13411005_13411076 chr2R_13408151_13408433;chr2R_13411589_13411688 6.28 NA NA 6.67 7.69 NA 1.72 NA 4.35 7.14 0.00 NA 0.00 NA 7.69 NA NA 14.29 NA NA NA 7.14 8.33 NA NA 0.00 NA NA 0.00 NA NA NA NA 7.69 NA NA 0.00 NA 0.00 0.00 NA 13.04 0.00 7.69 NA NA NA NA NA 5.88 NA NA NA NA 7.14 NA NA NA K intron_retention CG3731,E_chr3R_10716521_10717949,E_chr3R_10717341_10717506 chr3R + chr3R_10717446_10717506 chr3R_10717445_10717446;chr3R_10717506_10717507 chr3R_10717075_10717445;chr3R_10717507_10717598 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.19 0.23 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette arr,I_chr2R_9343426_9343486,I_chr2R_9347031_9370659 chr2R - chr2R_9347031_9370659 chr2R_9347031_9369280;chr2R_9369720_9370659 chr2R_9369281_9369719 chr2R_9346931_9347030;chr2R_9370660_9370692 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 93.33 NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 K cassette CG7611,I_chr3L_21518817_21520283 chr3L + chr3L_21518817_21520283 chr3L_21518817_21519083;chr3L_21520037_21520283 chr3L_21519084_21520036 chr3L_21518717_21518816;chr3L_21520284_21520383 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG42574,I_chr3R_618802_618939,I_chr3R_621546_625413 chr3R - chr3R_618785_618939 chr3R_618802_618939 chr3R_618940_619039;chr3R_618702_618784 0.00 0.00 0.00 0.00 2.70 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Su(z)2 chr2R + chr2R_8891889_8893269 chr2R_8891888_8891889;chr2R_8893269_8893270 chr2R_8888432_8891888;chr2R_8893270_8895425 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K alternative_acceptor CG11006,F_chr3L_12799159_12799339 chr3L + chr3L_12799438_12799952;chr3L_12799438_12800192;chr3L_12799438_12799955;chr3L_12799438_12800078 chr3L_12799438_12799967 chr3L_12799340_12799437;chr3L_12800193_12800930 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 NA 2.08 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 K intron_retention MB8.chr3R.pasa.66,ref1,RI_chr3R_2904130_2904237,I_chr3R_2904452_2904543 chr3R - chr3R_2905178_2905685 chr3R_2905177_2905178;chr3R_2905685_2905686 chr3R_2904976_2905177;chr3R_2905686_2906095 33.15 34.59 22.09 15.08 27.93 18.24 43.53 30.18 34.59 21.09 26.02 28.03 46.32 35.40 28.57 36.43 37.36 25.62 29.84 26.75 32.32 52.04 51.63 36.41 55.56 29.81 53.02 22.22 44.49 78.72 41.97 22.15 34.87 31.32 31.58 50.00 43.45 35.82 34.33 27.06 32.98 29.05 30.09 45.78 20.82 22.18 33.15 16.96 28.89 41.14 41.72 37.11 43.07 34.76 31.74 34.05 43.70 23.70 K jcn_only_AA vap,RI_chrX_15897976_15899352,I_chrX_15897976_15899654,I_chrX_15898011_15899654,I_chrX_15898427_15899017,RI_chrX_15898427_15899654,RI_chrX_15899237_15899352,I_chrX_15899237_15899654 chrX - chrX_15897976_15899654;chrX_15898427_15899654;chrX_15898011_15899654;chrX_15899510_15899654 chrX_15898478_15899654 chrX_15899655_15899705 18.88 NA NA NA NA NA 26.47 NA 11.11 NA NA 48.48 NA NA NA 35.29 NA NA NA 12.77 NA 14.71 18.52 NA 13.64 NA NA NA NA 20.00 31.03 NA NA 32.14 NA NA 5.00 NA 18.18 16.13 NA 40.54 NA 17.39 NA NA NA NA 40.00 NA NA 19.23 NA NA NA NA NA NA K jcn_only_AD pps chr3R + chr3R_8242305_8242369 chr3R_8242311_8242369 chr3R_8242370_8242851;chr3R_8240593_8242304 98.72 97.62 100.00 98.67 98.11 100.00 98.61 97.87 98.39 98.72 97.87 97.50 100.00 98.28 100.00 98.63 96.08 98.33 100.00 98.14 96.36 99.04 98.65 99.09 100.00 95.92 100.00 96.52 100.00 99.17 100.00 97.73 98.88 100.00 98.75 100.00 98.56 99.06 100.00 98.35 100.00 99.11 100.00 98.10 98.15 99.24 97.22 99.18 99.09 100.00 100.00 98.28 100.00 97.26 100.00 97.14 96.55 98.04 K alternative_donor Fak56D,F_chr2R_15323055_15323097 chr2R - chr2R_15324149_15324555;chr2R_15324149_15324719 chr2R_15324149_15324362 chr2R_15324053_15324148;chr2R_15324720_15324721 52.94 58.33 45.00 50.00 60.00 69.23 51.85 68.42 53.85 NA 50.00 44.83 53.33 58.33 47.37 53.85 66.67 62.50 52.94 39.47 64.29 41.67 48.00 55.56 NA 62.50 45.83 54.55 NA 50.00 58.82 50.00 45.00 50.00 57.14 54.55 57.14 53.85 50.00 40.74 50.00 56.67 58.33 46.67 50.00 55.56 60.00 34.78 46.15 57.14 45.00 75.00 42.86 NA NA NA 50.00 40.00 N alternative_donor CG2003 chr3R + chr3R_27815249_27815312;chr3R_27815253_27815312 chr3R_27815189_27815312 chr3R_27815313_27816636;chr3R_27815109_27815188 4.00 7.69 2.27 4.00 6.90 4.35 4.17 2.94 3.03 6.67 4.76 3.95 7.69 0.00 3.92 8.00 8.11 5.26 3.57 4.00 4.35 0.00 5.08 1.72 3.12 3.23 4.55 11.11 0.00 9.62 1.75 4.76 12.28 5.00 2.94 7.50 3.70 2.08 3.28 8.11 3.45 5.62 3.12 0.00 1.92 4.84 4.88 6.56 2.33 4.55 5.97 5.71 3.57 2.56 3.92 1.85 5.33 1.18 K intron_retention gro chr3R + chr3R_21871386_21871450 chr3R_21871385_21871386;chr3R_21871450_21871451 chr3R_21871197_21871385;chr3R_21871451_21871549 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31619,I_chr2L_21725446_21728027 chr2L + chr2L_21719644_21720358 chr2L_21719643_21719644;chr2L_21720358_21720359 chr2L_21719514_21719643;chr2L_21720359_21720387 36.36 NA NA 76.47 NA NA NA 52.94 40.00 NA NA 33.33 NA NA NA NA NA NA 50.00 27.59 NA NA NA NA NA NA NA NA NA NA 36.36 NA NA 46.15 NA NA 36.36 NA 38.89 13.33 NA 42.86 NA 7.14 6.67 NA NA 15.79 40.00 NA 35.29 NA NA NA NA NA NA NA K alternative_last_exon Csp,RI_chr3L_22262215_22262452,I_chr3L_22264863_22266536,I_chr3L_22273037_22275661 chr3L + chr3L_22263021_22264657 chr3L_22263021_22264013 chr3L_22264658_22266938 chr3L_22264014_22264076 chr3L_22262889_22263020 57.89 61.33 62.50 55.32 50.00 48.08 38.89 52.46 55.75 61.82 57.89 62.28 44.68 46.43 52.50 27.91 51.85 50.75 42.86 60.67 59.09 67.15 62.07 67.68 55.56 48.15 65.12 70.31 65.91 63.83 40.51 53.12 66.29 47.24 62.82 57.61 72.36 71.62 73.11 59.40 53.76 58.22 44.00 58.89 55.56 53.27 61.63 50.93 47.69 62.90 60.20 50.94 65.28 64.41 41.46 58.67 59.77 45.80 K cassette Klp98A,I_chr3R_23386287_23386484 chr3R - chr3R_23376204_23376594 chr3R_23376204_23376306;chr3R_23376430_23376594 chr3R_23376307_23376429 chr3R_23376090_23376203;chr3R_23376595_23376768 100.00 100.00 97.56 100.00 100.00 100.00 94.74 98.73 98.82 100.00 97.14 100.00 100.00 100.00 97.62 100.00 96.97 100.00 100.00 100.00 100.00 98.00 100.00 100.00 100.00 97.06 97.92 100.00 92.68 100.00 100.00 100.00 100.00 100.00 100.00 96.00 97.56 100.00 100.00 98.08 100.00 98.70 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 K jcn_only_AA Zyx102EF,I_chr4_1079131_1080044,I_chr4_1079946_1080044,RI_chr4_1079959_1080044,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1079915_1080044;chr4_1079959_1080044 chr4_1079978_1080044 chr4_1080045_1080072;chr4_1079859_1079914 50.00 46.67 24.14 52.33 NA 50.00 81.11 52.63 47.78 NA 57.58 38.78 48.57 59.46 25.81 37.78 58.14 33.33 60.71 40.98 50.00 NA 39.13 NA 61.54 46.88 48.00 NA NA NA 45.00 NA NA 50.57 56.52 76.00 59.09 NA NA 60.00 NA 48.57 40.48 51.85 NA 58.33 61.54 NA 48.65 88.00 59.09 NA NA NA 47.62 NA 35.71 38.89 K intron_retention Hydr1 chr2R + chr2R_5020273_5020551 chr2R_5020272_5020273;chr2R_5020551_5020552 chr2R_5020204_5020272;chr2R_5020552_5020852 65.87 NA NA 91.67 NA NA NA NA 53.85 NA 58.33 62.50 NA NA 60.00 70.00 NA NA NA 72.73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA 69.23 NA NA NA K alternative_donor rhea,E_chr3L_8554660_8564426,I_chr3L_8556289_8556981,I_chr3L_8563622_8564067 chr3L + chr3L_8556735_8557078 chr3L_8557008_8557078 chr3L_8557079_8557081;chr3L_8556646_8556734 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA NA K cassette mu2,I_chr3L_1945373_1945436,I_chr3L_1945382_1945647 chr3L - chr3L_1945382_1945647 chr3L_1945382_1945436;chr3L_1945592_1945647 chr3L_1945437_1945591 chr3L_1945282_1945381;chr3L_1945648_1945655 100.00 100.00 100.00 96.77 100.00 100.00 95.83 100.00 100.00 100.00 92.86 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 97.22 92.31 100.00 100.00 100.00 100.00 100.00 100.00 88.89 93.33 100.00 94.44 100.00 100.00 96.43 100.00 94.12 92.86 100.00 100.00 96.43 93.75 96.43 100.00 100.00 100.00 94.12 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 94.44 100.00 94.44 96.00 K intron_retention I_chr3R_5338175_5338299,Rlc1 chr3R - chr3R_5341407_5341484 chr3R_5341406_5341407;chr3R_5341484_5341485 chr3R_5341124_5341406;chr3R_5341485_5341829 1.75 0.00 5.00 0.00 NA 0.00 2.13 1.67 5.00 0.00 0.00 1.03 0.00 0.00 8.11 2.70 NA 9.09 0.00 3.70 11.76 0.00 2.11 0.00 0.00 5.26 5.45 2.70 6.45 0.00 5.41 0.00 1.15 4.35 0.00 1.75 4.44 4.11 2.44 3.95 1.19 1.27 0.00 0.00 0.00 2.22 2.04 2.38 1.22 8.77 0.99 4.26 1.32 1.27 5.26 2.50 3.03 0.00 K jcn_only_AD deltaCOP,I_chrX_1754047_1754089,I_chrX_1755132_1755191,E_chrX_1755139_1755188,I_chrX_1757755_1757801 chrX - chrX_1755132_1755191 chrX_1755132_1755188 chrX_1755039_1755131;chrX_1755192_1755288 99.70 98.93 99.71 99.79 99.63 100.00 99.51 99.45 99.39 100.00 100.00 99.62 99.32 99.60 100.00 100.00 100.00 99.66 99.32 99.58 99.67 100.00 99.09 100.00 100.00 100.00 99.70 99.54 99.56 99.55 100.00 100.00 100.00 99.79 99.58 100.00 99.37 99.04 99.75 99.41 98.70 99.86 100.00 100.00 99.57 100.00 100.00 100.00 99.50 99.50 99.34 99.17 100.00 99.53 100.00 99.03 100.00 100.00 K intron_retention CG3651,I_chr2L_22124217_22124661 chr2L + chr2L_22124029_22124089 chr2L_22124028_22124029;chr2L_22124089_22124090 chr2L_22123741_22124028;chr2L_22124090_22124216 0.00 0.00 0.00 1.19 0.00 0.00 0.76 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.91 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor rdgA chrX + chrX_8910362_8911891;chrX_8910362_8911876 chrX_8910362_8911894 chrX_8910158_8910361;chrX_8911895_8912021 100.00 NA NA NA NA 100.00 NA NA 97.06 NA NA 93.33 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA 95.65 NA NA 87.50 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention CG13957,RI_chrX_16210869_16210936 chrX + chrX_16207852_16207912 chrX_16207851_16207852;chrX_16207912_16207913 chrX_16207820_16207851;chrX_16207913_16208430 0.00 NA NA 6.67 NA NA 4.76 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention Rcd1 chr2R - chr2R_10037459_10037730 chr2R_10037458_10037459;chr2R_10037730_10037731 chr2R_10037393_10037458;chr2R_10037731_10037959 14.64 NA NA NA NA NA NA 7.69 15.00 NA NA 13.16 NA NA NA NA NA NA NA 15.38 NA NA 35.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 54.55 NA 12.50 NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA K intron_retention CG16941 chr3R - chr3R_12825777_12825832 chr3R_12825776_12825777;chr3R_12825832_12825833 chr3R_12825604_12825776;chr3R_12825833_12827295 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1399,I_chr2R_3574133_3574191 chr2R - chr2R_3565910_3566074 chr2R_3565909_3565910;chr2R_3566074_3566075 chr2R_3565503_3565909;chr2R_3566075_3566131 0.00 0.00 0.00 0.00 0.00 0.00 4.92 2.53 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 3.77 2.86 1.64 2.44 0.00 2.90 0.00 0.00 0.00 0.00 1.67 0.00 1.92 0.00 5.26 0.00 0.00 0.00 1.65 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG34140,CG34140_Mkp,noncoding_9561 chr3L - chr3L_184073_184131 chr3L_184072_184073;chr3L_184131_184132 chr3L_184008_184072;chr3L_184132_184197 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.99 0.00 0.00 0.00 0.00 2.86 2.70 0.00 4.08 9.09 0.00 0.00 0.00 0.00 0.00 0.00 4.44 1.96 2.27 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 2.56 0.00 0.00 K intron_retention CG31731,I_chr2L_13786850_13786922 chr2L + chr2L_13788721_13788787 chr2L_13788720_13788721;chr2L_13788787_13788788 chr2L_13788097_13788720;chr2L_13788788_13789790 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr2L_10341933_10342155,CG5025 chr2L + chr2L_10343763_10343815 chr2L_10343762_10343763;chr2L_10343815_10343816 chr2L_10343686_10343762;chr2L_10343816_10343877 100.00 94.44 95.24 100.00 100.00 100.00 100.00 97.87 97.37 NA 100.00 100.00 100.00 100.00 95.45 100.00 95.45 100.00 100.00 100.00 100.00 NA 100.00 95.24 100.00 100.00 95.24 94.12 100.00 100.00 96.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 95.45 89.47 90.00 100.00 100.00 100.00 97.06 94.44 100.00 100.00 100.00 93.75 97.14 100.00 100.00 100.00 K jcn_only_AA CG9855,I_chr3R_223384_223429 chr3R - chr3R_223363_223429 chr3R_223384_223429 chr3R_223430_223529;chr3R_223284_223362 1.22 1.96 0.00 2.00 0.00 3.70 0.00 3.17 0.00 0.00 0.00 0.79 2.27 0.00 0.00 3.03 2.17 1.69 0.00 0.00 0.00 1.47 0.00 0.00 2.08 1.69 0.00 0.00 1.39 3.39 2.13 0.00 1.79 1.19 2.22 1.49 0.96 0.00 0.00 0.00 0.00 2.34 2.22 2.00 2.50 1.64 2.13 1.69 0.96 2.63 0.00 0.00 5.13 0.00 1.61 1.64 0.00 1.22 N jcn_only_AA CG1416,I_chr2L_21758100_21758179,I_chr2L_21758143_21758183,I_chr2L_21758143_21758209 chr2L + chr2L_21758143_21758201;chr2L_21758143_21758205;chr2L_21758143_21758183 chr2L_21758143_21758209 chr2L_21758116_21758142;chr2L_21758210_21758279 1.85 3.57 2.56 4.08 1.85 0.00 3.23 0.00 1.39 6.25 5.00 0.00 4.35 1.49 3.39 0.00 3.33 1.08 2.00 0.53 2.13 0.00 4.17 0.00 0.00 3.23 0.00 1.85 3.57 2.38 2.63 2.60 0.00 0.96 3.92 NA 1.41 2.99 2.25 1.69 0.00 0.96 0.00 0.00 3.88 4.41 0.00 0.00 1.42 3.19 0.00 3.17 0.00 3.45 1.00 2.11 1.82 2.02 K intron_retention CG9220 chrX - chrX_15481040_15481142 chrX_15481039_15481040;chrX_15481142_15481143 chrX_15479662_15481039;chrX_15481143_15481556 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K cassette Abl,I_chr3L_16622304_16639909,RI_chr3L_16652567_16654512 chr3L - chr3L_16622307_16639909 chr3L_16622307_16624476;chr3L_16624531_16639909 chr3L_16624477_16624530 chr3L_16621763_16622306;chr3L_16639910_16640009 19.77 14.58 21.57 26.67 18.92 20.37 4.44 34.48 16.33 8.93 20.00 29.63 12.00 20.45 21.88 25.93 21.43 25.00 22.22 27.83 29.79 30.00 19.54 15.00 8.70 9.43 11.86 8.00 13.91 25.29 25.00 20.93 23.89 21.95 16.42 6.94 19.77 17.78 12.50 21.34 14.04 22.22 37.50 17.72 14.71 18.42 23.08 20.93 26.42 20.00 16.48 15.00 19.15 15.79 21.74 12.50 15.00 17.74 K alternative_acceptor drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9385395_9389317 chr2R_9389255_9389317 chr2R_9389318_9389399;chr2R_9385297_9385394 0.00 0.00 0.00 0.81 0.00 0.00 0.75 0.68 0.48 0.00 0.00 0.83 0.00 0.00 0.00 0.72 0.00 1.47 0.00 0.93 0.00 1.06 0.00 1.30 0.00 0.00 0.90 1.54 1.32 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention noncoding_22267 chrX - chrX_6581336_6581395 chrX_6581335_6581336;chrX_6581395_6581396 chrX_6581126_6581335;chrX_6581396_6581415 54.92 73.33 41.38 27.50 46.15 46.67 41.94 50.00 52.17 33.33 57.14 40.48 59.09 36.84 55.00 50.00 55.56 29.17 61.90 50.85 47.37 65.00 80.00 71.43 90.00 16.67 76.47 37.50 36.84 69.23 41.67 45.16 46.43 54.84 100.00 42.86 52.63 NA 58.33 66.67 51.85 61.76 55.00 75.00 60.00 67.74 77.78 68.97 42.86 70.83 90.00 66.67 20.00 66.67 57.69 65.00 36.36 34.62 K intron_retention CG4848 chr3R - chr3R_8041676_8042602 chr3R_8041675_8041676;chr3R_8042602_8042603 chr3R_8041331_8041675;chr3R_8042603_8043268 0.00 0.00 0.00 11.76 NA 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 9.09 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pde11,I_chr2L_18539674_18540627 chr2L - chr2L_18537688_18538029 chr2L_18537687_18537688;chr2L_18538029_18538030 chr2L_18537166_18537687;chr2L_18538030_18538185 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K cassette Asx chr2R + chr2R_10394855_10395044 chr2R_10394855_10394917;chr2R_10394987_10395044 chr2R_10394918_10394986 chr2R_10394762_10394854;chr2R_10395045_10395817 23.08 29.41 20.00 38.10 12.50 NA 26.32 25.93 23.26 31.58 14.29 20.00 NA 28.57 20.00 10.00 17.65 20.00 15.79 28.89 NA 43.75 16.67 18.75 20.00 10.00 26.32 NA 14.29 25.00 25.00 NA 29.41 18.18 20.00 40.00 23.08 NA 29.41 29.03 NA 21.05 26.32 20.00 NA 30.77 NA 40.00 23.08 NA 27.78 15.38 NA NA 26.09 NA NA 14.29 K intron_retention CG8108,EI_chr3L_9859462_9859590,chr3L_9859594_9859878.0 chr3L + chr3L_9859462_9860413 chr3L_9859461_9859462;chr3L_9860413_9860414 chr3L_9859414_9859461;chr3L_9860414_9860844 18.00 15.46 17.54 29.23 15.52 15.79 30.30 26.19 16.09 21.74 16.39 13.71 27.08 19.30 14.94 29.79 19.30 7.50 25.81 23.15 16.39 20.55 19.01 16.67 17.14 18.00 23.96 20.37 19.35 20.00 51.92 13.89 11.27 19.51 18.57 24.64 16.67 14.00 9.49 22.22 18.75 17.97 17.86 21.67 8.16 19.48 19.15 15.56 20.72 19.72 14.05 16.00 7.41 8.75 23.29 12.79 9.43 6.35 K intron_retention CG31782,VhaSFD,RI_chr2L_16731891_16731942 chr2L - chr2L_16724994_16727009 chr2L_16724993_16724994;chr2L_16727009_16727010 chr2L_16724859_16724993;chr2L_16727010_16727488 5.49 1.89 7.09 6.59 9.09 7.48 5.17 5.00 7.22 3.77 6.80 7.80 2.75 6.19 7.97 6.40 5.21 9.43 10.10 5.82 7.69 3.92 6.41 4.08 6.17 7.48 3.18 3.60 2.97 5.49 5.71 6.67 4.85 8.11 6.67 4.76 4.70 3.33 4.58 1.29 9.62 5.12 7.95 3.55 3.12 4.35 4.60 8.62 4.59 4.60 6.12 5.33 2.44 3.30 4.58 5.88 7.07 5.80 K cassette CG15335 chrX - chrX_8016548_8020722 chrX_8016548_8017224;chrX_8017402_8020722 chrX_8017225_8017401 chrX_8016524_8016547;chrX_8020723_8020743 77.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 66.67 NA NA NA NA 80.00 83.33 71.43 NA NA NA NA NA NA 80.00 NA NA NA 62.50 K jcn_only_AA CG8765,RI_chr3L_19679741_19679894 chr3L - chr3L_19679741_19679894 chr3L_19679747_19679894 chr3L_19679895_19679994;chr3L_19679641_19679740 97.87 NA NA 95.45 NA NA NA 95.45 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 96.43 NA NA NA 96.15 NA 96.00 95.00 95.24 NA 100.00 100.00 NA NA 100.00 100.00 NA 97.22 100.00 100.00 NA NA NA 95.65 NA 97.87 96.55 NA NA NA NA NA NA NA NA NA K intron_retention CG8334,I_chr3L_19870731_19870822 chr3L + chr3L_19873055_19873110 chr3L_19873054_19873055;chr3L_19873110_19873111 chr3L_19872867_19873054;chr3L_19873111_19873296 0.00 0.00 0.00 10.00 0.00 0.00 7.69 0.00 2.50 0.00 11.76 0.00 0.00 0.00 0.00 10.34 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 3.51 0.00 14.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 4.35 0.00 0.00 0.00 1.33 2.70 0.00 7.41 2.70 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor I_chr3R_27554202_27554334,CG11563 chr3R + chr3R_27563323_27563390 chr3R_27563323_27563380 chr3R_27563254_27563322;chr3R_27563391_27563456 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 K alternative_acceptor Caki,I_chr3R_17645303_17645375 chr3R - chr3R_17644846_17645375 chr3R_17645303_17645375 chr3R_17645376_17645475;chr3R_17644740_17644845 19.70 17.24 21.82 1.37 21.92 23.68 14.79 13.61 15.09 22.22 6.25 19.88 18.57 20.62 15.89 38.93 17.65 13.86 17.71 13.92 13.92 46.00 12.20 18.37 11.43 10.00 11.34 24.14 52.75 23.91 16.43 30.77 50.00 16.67 20.69 13.43 17.61 16.87 19.30 39.39 25.71 19.13 19.70 23.08 21.15 27.78 22.22 46.15 18.07 20.00 20.39 25.00 25.49 17.31 22.32 21.67 15.28 39.22 N alternative_donor alc,I_chr2R_5023501_5023700 chr2R - chr2R_5023501_5025265 chr2R_5023501_5024456 chr2R_5023401_5023500;chr2R_5025266_5025455 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG16936,RI_chr2R_20655101_20655166,I_chr2R_20660319_20660496 chr2R - chr2R_20655101_20655161;chr2R_20655101_20655476;chr2R_20655101_20655166 chr2R_20655101_20655620 chr2R_20655001_20655100;chr2R_20655621_20655665 91.40 88.89 94.52 92.86 92.06 95.77 90.00 95.32 94.76 93.51 92.16 93.04 95.65 91.04 88.73 92.21 91.36 11.11 97.06 93.51 89.19 91.30 90.91 90.85 95.24 93.33 84.06 85.00 85.71 78.05 76.14 84.85 86.96 96.97 95.00 NA 93.75 94.62 90.65 94.27 91.07 95.72 90.70 87.50 84.96 75.36 84.38 80.82 93.10 94.64 92.62 96.51 98.96 89.47 90.24 91.43 93.57 85.62 K intron_retention Ucrh,CREFI_chr3LHet_606442_607073 chr3LHet + chr3LHet_606442_606499 chr3LHet_606441_606442;chr3LHet_606499_606500 chr3LHet_606350_606441;chr3LHet_606500_606827 0.00 0.52 0.00 1.13 0.00 0.00 1.64 0.82 0.63 0.00 0.00 0.43 0.00 2.58 0.00 0.71 0.00 0.00 0.00 0.33 0.00 0.00 0.56 0.00 0.00 0.00 4.37 4.08 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 1.38 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 K alternative_donor exd chrX + chrX_15886650_15887504 chrX_15886695_15887504 chrX_15887505_15887806;chrX_15886529_15886649 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 98.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette tou,RI_chr2R_7474644_7475275,I_chr2R_7479681_7491857,I_chr2R_7504956_7505020 chr2R - chr2R_7474644_7475150 chr2R_7474644_7475042;chr2R_7475088_7475150 chr2R_7475043_7475087 chr2R_7474602_7474643;chr2R_7475151_7475216 20.83 23.08 20.69 30.00 19.05 20.83 15.00 35.56 21.31 31.58 60.00 18.87 27.27 17.39 23.08 14.89 27.27 25.93 28.57 28.36 60.00 23.81 17.39 36.84 20.83 13.64 27.78 14.29 10.53 16.67 27.27 14.29 14.12 20.69 20.51 3.45 17.78 23.81 30.43 14.71 12.50 18.64 19.05 25.00 27.78 18.52 18.75 17.95 21.31 NA 24.00 13.64 10.53 30.00 28.57 23.08 NA 20.51 K intron_retention lt,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22832746_22832804 chr2L_22832745_22832746;chr2L_22832804_22832805 chr2L_22832624_22832745;chr2L_22832805_22832867 6.25 14.00 0.00 10.67 8.33 13.51 6.56 6.03 12.71 0.00 0.00 7.81 8.96 6.90 8.00 15.00 7.25 4.00 6.25 4.00 2.94 2.60 16.36 8.89 12.50 8.51 22.92 28.57 0.00 11.36 5.49 4.00 5.00 6.56 4.44 13.33 2.56 0.00 5.26 7.69 8.51 5.10 12.07 4.17 3.51 2.78 2.27 7.14 8.33 6.98 3.39 5.41 9.68 0.00 2.86 3.28 2.50 2.70 K intron_retention KCNQ,I_chr2R_6034329_6034563,I_chr2R_6039928_6040408 chr2R - chr2R_6033667_6033733 chr2R_6033666_6033667;chr2R_6033733_6033734 chr2R_6033645_6033666;chr2R_6033734_6033893 58.82 NA NA 47.06 NA NA NA 76.92 61.11 NA NA 63.64 NA 88.89 NA 72.73 NA NA NA 58.82 NA NA 80.00 NA NA NA NA NA NA NA 81.82 NA NA 69.23 NA NA NA NA NA 38.89 NA 58.82 NA 46.15 46.15 73.33 46.15 NA 54.55 50.00 44.44 NA NA NA NA 72.73 33.33 30.00 K jcn_only_AA l(2)NC136,I_chr2R_1545723_1546024 chr2R - chr2R_1545003_1545147;chr2R_1545087_1545147 chr2R_1545081_1545147 chr2R_1545148_1545722;chr2R_1544877_1545002 2.12 1.92 1.05 0.97 2.48 2.06 2.70 1.79 1.85 2.22 0.00 1.46 0.95 3.85 1.45 2.23 2.33 1.77 1.45 1.97 1.00 2.13 4.84 2.84 1.90 4.29 4.11 12.70 4.62 4.76 0.59 2.17 5.26 2.12 1.12 0.00 1.23 3.33 1.50 2.52 2.50 0.85 0.00 5.31 2.74 1.71 1.75 2.70 1.76 1.37 0.00 3.92 2.27 1.37 2.80 2.65 2.25 2.17 K intron_retention RI_chrX_1405134_1408515,CG32810 chrX + chrX_1409075_1409410 chrX_1409074_1409075;chrX_1409410_1409411 chrX_1408890_1409074;chrX_1409411_1409718 2.11 3.57 0.00 2.75 0.00 3.28 5.06 1.57 3.76 9.09 5.56 0.00 0.00 3.23 5.81 0.00 0.00 2.00 0.00 3.36 0.00 3.30 4.35 5.80 8.33 0.00 5.06 8.00 5.48 2.50 1.39 0.00 1.46 1.00 0.00 0.00 4.41 4.44 4.48 7.14 1.52 2.11 0.00 6.56 0.00 0.00 0.00 1.85 2.14 0.00 4.55 3.23 0.00 0.00 2.15 5.26 0.00 1.52 K intron_retention mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818575_7818970 chr3R_7818574_7818575;chr3R_7818970_7818971 chr3R_7818507_7818574;chr3R_7818971_7818995 29.31 22.97 25.32 19.08 24.66 24.07 56.82 26.45 28.18 28.57 39.13 34.56 31.37 29.27 32.56 27.52 28.87 18.06 22.77 31.69 37.93 13.08 31.82 31.11 32.14 18.52 46.55 38.00 34.38 33.33 31.51 20.59 14.93 29.92 17.65 51.72 25.86 38.00 21.62 25.00 30.00 26.67 34.72 29.31 19.23 33.85 34.09 21.28 31.45 36.21 33.33 29.63 32.00 22.22 28.74 31.82 23.88 13.92 K jcn_only_AD CG17928 chr2L + chr2L_16792145_16792369 chr2L_16792274_16792369 chr2L_16792370_16792752;chr2L_16791943_16792144 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA 100.00 NA 100.00 100.00 NA 100.00 NA NA NA 100.00 100.00 97.87 NA 100.00 NA 97.22 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA K intron_retention Dscam,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3249373_3254309 chr2R_3249372_3249373;chr2R_3254309_3254310 chr2R_3249273_3249372;chr2R_3254310_3254387 30.77 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA 58.82 NA NA 47.06 NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA 5.88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RpLP1,I_chr2L_420147_420282,I_chr2L_420147_420300,E_chr2L_420151_420297,I_chr2L_420231_420291,E_chr2L_422193_422242 chr2L + chr2L_420147_420300 chr2L_420146_420147;chr2L_420300_420301 chr2L_420131_420146;chr2L_420301_420382 100.00 100.00 100.00 99.62 100.00 99.28 100.00 99.48 100.00 100.00 100.00 99.01 100.00 98.99 99.51 100.00 100.00 99.33 100.00 100.00 99.26 100.00 99.60 100.00 99.53 99.29 99.60 100.00 99.58 99.32 100.00 100.00 100.00 100.00 99.23 100.00 100.00 100.00 99.74 99.60 100.00 100.00 99.11 99.46 100.00 99.52 99.67 100.00 100.00 100.00 100.00 100.00 99.65 99.46 99.43 100.00 99.78 99.65 K alternative_donor cact,RI_chr2L_16314859_16315116,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16325055_16325577;chr2L_16325055_16325587 chr2L_16325055_16325493 chr2L_16324333_16325054;chr2L_16325588_16325598 100.00 100.00 100.00 95.38 97.50 100.00 97.56 100.00 98.78 100.00 96.97 96.88 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 97.14 100.00 97.56 96.61 100.00 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.90 97.06 100.00 100.00 100.00 100.00 98.51 98.82 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention unc-5,I_chr2R_11252444_11252570 chr2R + chr2R_11252444_11253215 chr2R_11252443_11252444;chr2R_11253215_11253216 chr2R_11252344_11252443;chr2R_11253216_11253289 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 N intron_retention I_chrX_16309561_16309689,hang,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16323441_16323563 chrX_16323440_16323441;chrX_16323563_16323564 chrX_16323093_16323440;chrX_16323564_16323610 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 86.76 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 K alternative_donor CG12393,CG9135 chr2L + chr2L_6048126_6048511 chr2L_6048419_6048511 chr2L_6048512_6048626;chr2L_6048106_6048125 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor tlk chrX + chrX_3674212_3675687 chrX_3674723_3675687 chrX_3675688_3677592;chrX_3674198_3674211 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 93.75 NA 100.00 100.00 100.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 90.00 100.00 85.71 NA 66.67 100.00 100.00 100.00 NA 100.00 80.00 NA NA 100.00 100.00 100.00 100.00 K alternative_acceptor CG31999,I_chr4_238453_238873,I_chr4_238809_238873,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_238121_238873;chr4_238809_238873 chr4_238453_238873 chr4_238874_238973;chr4_238032_238120 0.00 0.00 1.96 0.00 2.38 0.00 0.00 0.99 1.44 0.00 4.76 0.75 0.00 1.43 0.00 0.99 1.69 0.00 1.14 0.60 5.13 0.00 2.86 0.00 0.00 3.12 0.00 NA 0.00 2.86 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.76 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 K intron_retention l(3)82Fd,I_chr3R_1122358_1125191,I_chr3R_1131693_1133665,I_chr3R_1147660_1148709 chr3R - chr3R_1122358_1123034 chr3R_1122357_1122358;chr3R_1123034_1123035 chr3R_1122258_1122357;chr3R_1123035_1123143 9.60 8.33 0.00 5.88 NA 0.00 8.00 16.67 11.43 10.00 10.00 5.56 0.00 12.50 8.57 9.52 NA 0.00 20.00 11.76 10.00 24.32 14.58 9.76 6.06 11.54 14.29 13.33 8.51 9.68 16.67 6.25 5.71 5.71 0.00 3.23 6.06 10.00 6.06 35.71 11.76 14.29 NA 3.23 0.00 15.15 8.33 6.06 6.52 23.08 10.71 20.00 0.00 15.00 12.00 0.00 15.00 7.69 K jcn_only_AA CG34408,I_chrX_10120689_10121004 chrX + chrX_10120689_10121444;chrX_10120689_10121381 chrX_10120689_10121435 chrX_10120589_10120688;chrX_10121445_10121990 95.78 92.31 100.00 87.88 100.00 100.00 97.50 100.00 97.96 82.61 100.00 100.00 100.00 96.00 91.30 100.00 NA 96.30 NA 90.74 100.00 84.85 93.88 93.02 NA NA 90.32 78.26 96.97 100.00 94.29 96.97 88.46 95.00 96.43 97.22 91.94 92.11 95.56 89.86 96.88 95.00 NA 93.33 91.18 97.83 94.29 84.62 98.00 96.77 94.34 92.59 97.67 100.00 94.29 88.89 97.67 100.00 K intron_retention RpL9 chr2L - chr2L_11004056_11004128 chr2L_11004055_11004056;chr2L_11004128_11004129 chr2L_11004006_11004055;chr2L_11004129_11004217 47.06 61.54 30.77 47.06 42.86 NA 42.86 63.16 56.25 NA NA 38.46 NA 36.36 41.67 38.10 53.85 NA 46.15 47.06 NA 43.75 90.00 46.15 NA 60.00 92.86 88.89 98.21 NA 26.67 NA 12.50 42.86 NA NA 100.00 NA NA 50.00 NA 29.03 NA NA NA 52.94 NA 33.33 40.91 66.67 75.00 NA 63.64 NA 28.57 80.00 56.52 12.00 K jcn_only_AA pcx,fs(1)K10 chrX + chrX_2119897_2119950 chrX_2119897_2119938 chrX_2119744_2119896;chrX_2119951_2120260 0.61 0.00 0.00 0.00 0.00 0.00 2.70 0.00 3.42 0.00 4.76 3.19 4.88 0.00 4.35 0.00 0.00 0.00 1.96 1.94 0.00 1.33 1.35 1.89 0.00 3.51 3.45 2.56 0.00 0.00 0.00 NA 0.00 1.23 5.26 0.00 3.91 0.00 0.00 4.41 NA 1.96 0.00 0.00 NA NA NA 2.17 2.22 NA 3.03 0.00 NA NA 3.23 NA NA NA K alternative_donor CG33129,I_chr2L_10966410_10967142,noncoding_2515,I_chr2L_10966622_10967108 chr2L - chr2L_10966622_10968104;chr2L_10966622_10968083;chr2L_10966622_10967855 chr2L_10966622_10968133 chr2L_10966522_10966621;chr2L_10968134_10968152 93.50 93.75 88.64 93.02 100.00 92.00 90.00 93.75 92.37 90.91 95.56 96.51 89.74 95.83 95.16 95.00 95.12 95.65 91.80 93.50 94.12 87.50 90.00 76.92 NA 96.77 83.33 NA 100.00 NA 95.56 100.00 94.74 89.53 NA 83.33 81.82 NA NA 90.91 88.89 95.33 92.31 NA 100.00 89.47 NA 95.65 93.10 NA 62.50 100.00 NA NA 94.23 NA 93.33 98.33 K jcn_only_AD CG4199,I_chrX_1962457_1964222 chrX - chrX_1965614_1967409;chrX_1965614_1967149;chrX_1965614_1966582 chrX_1965614_1965872 chrX_1965393_1965613;chrX_1967410_1967460 99.10 98.88 99.22 100.00 100.00 98.97 97.06 98.93 99.45 99.04 100.00 97.78 96.72 100.00 100.00 97.78 100.00 100.00 99.10 97.78 100.00 95.00 98.80 98.99 100.00 98.21 99.07 98.59 99.47 100.00 96.32 99.10 99.04 100.00 99.27 100.00 99.28 99.50 98.94 97.73 98.08 99.63 98.94 98.48 100.00 99.50 100.00 99.58 97.79 99.37 98.75 99.31 97.63 100.00 100.00 98.84 100.00 98.35 K intron_retention pyd,I_chr3R_4654041_4664113,I_chr3R_4749124_4756437 chr3R - chr3R_4657997_4658075 chr3R_4657996_4657997;chr3R_4658075_4658076 chr3R_4657864_4657996;chr3R_4658076_4658367 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.08 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32809,I_chrX_1576304_1577129,I_chrX_1576463_1577129,I_chrX_1576815_1577129,I_chrX_1577031_1577129,CEI_chrX_1579569_1579679,RI_chrX_1585391_1586471,I_chrX_1589508_1589564 chrX - chrX_1576962_1577129 chrX_1576961_1576962;chrX_1577129_1577130 chrX_1576949_1576961;chrX_1577130_1577229 25.00 13.33 NA NA NA NA 54.55 NA 16.00 NA NA 50.00 NA NA NA 33.33 30.77 NA NA 16.00 NA 66.67 NA 25.00 NA NA NA NA NA NA 22.22 NA 16.67 NA NA NA 23.81 NA 33.33 25.00 NA 0.00 NA NA NA 16.67 NA NA 12.50 33.33 41.67 NA NA NA 30.77 NA NA NA K intron_retention CG9674,I_chr3L_16785706_16785748,I_chr3L_16793055_16800660 chr3L - chr3L_16786307_16786373 chr3L_16786306_16786307;chr3L_16786373_16786374 chr3L_16786176_16786306;chr3L_16786374_16787537 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17765 chr2R + chr2R_6368796_6368867 chr2R_6368795_6368796;chr2R_6368867_6368868 chr2R_6368732_6368795;chr2R_6368868_6369676 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.44 0.58 0.52 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 K jcn_only_AD Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046111 chr3L_16045275_16046111 chr3L_16046112_16046204;chr3L_16045216_16045250 20.00 NA NA 25.93 NA NA NA 9.09 29.63 NA NA NA NA NA 23.81 NA 15.00 NA NA 26.67 NA 4.00 NA NA NA NA NA NA NA 5.00 20.00 NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 10.71 NA NA NA NA NA NA NA NA 4.17 K intron_retention Not1,I_chr2R_5463624_5463682 chr2R - chr2R_5457662_5457724 chr2R_5457661_5457662;chr2R_5457724_5457725 chr2R_5456490_5457661;chr2R_5457725_5460288 4.55 0.00 13.79 3.80 0.00 6.25 0.00 4.00 4.42 0.00 0.00 5.56 5.71 8.33 7.89 4.55 5.56 0.00 0.00 4.12 6.25 5.49 4.35 2.50 4.35 3.85 6.94 9.52 8.33 6.25 0.00 8.70 11.63 0.00 12.82 5.26 4.60 0.00 8.96 0.00 10.00 3.26 0.00 2.78 13.64 13.79 5.13 0.00 7.81 5.00 4.29 4.26 11.11 6.90 7.14 0.00 0.00 0.00 K intron_retention Hsc70Cb chr3L + chr3L_14030212_14030577 chr3L_14030211_14030212;chr3L_14030577_14030578 chr3L_14030158_14030211;chr3L_14030578_14030850 73.20 72.73 73.68 75.00 46.15 NA 95.83 83.78 68.29 NA 62.50 83.33 73.33 64.71 62.50 82.86 55.56 53.33 65.38 73.53 60.00 73.68 69.23 88.89 100.00 92.31 100.00 80.00 89.66 53.33 55.00 60.00 76.92 73.08 90.00 90.91 NA NA NA 95.24 90.00 68.75 68.75 76.47 60.00 64.29 50.00 75.76 77.42 72.73 62.50 NA NA NA 65.00 NA 63.64 76.47 K intron_retention Xe7,CRI_chr3R_1493111_1493414 chr3R - chr3R_1494535_1494874 chr3R_1494534_1494535;chr3R_1494874_1494875 chr3R_1494349_1494534;chr3R_1494875_1494886 94.12 91.67 93.33 96.55 86.67 94.74 92.00 97.14 96.88 100.00 90.91 94.74 95.00 93.33 100.00 89.74 93.75 100.00 100.00 96.67 92.31 100.00 85.71 94.44 81.25 100.00 94.12 90.91 100.00 94.12 74.19 100.00 100.00 93.33 100.00 94.44 90.00 84.62 90.00 96.30 90.00 90.32 100.00 78.57 88.89 88.24 90.91 94.12 90.00 100.00 100.00 100.00 100.00 NA 94.44 72.73 90.91 100.00 N alternative_acceptor CG42238,RI_chr2L_20967747_21051705,RI_chr2L_21028682_21051773 chr2L - chr2L_20966081_20966303 chr2L_20966157_20966303 chr2L_20966304_20966330;chr2L_20965545_20966080 66.67 NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Xpd chr2R + chr2R_17059550_17059608 chr2R_17059549_17059550;chr2R_17059608_17059609 chr2R_17059329_17059549;chr2R_17059609_17059990 0.00 0.00 2.00 4.92 2.94 0.00 0.00 3.57 0.00 0.00 0.00 2.30 0.00 0.00 0.00 3.08 3.33 0.00 1.85 1.94 0.00 4.44 3.39 0.00 4.55 0.00 1.49 0.00 5.45 2.27 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 2.27 2.63 1.82 0.00 0.00 2.08 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 3.45 K cassette l(2)k09913 chr2R + chr2R_18954831_18955469 chr2R_18954831_18955154;chr2R_18955362_18955469 chr2R_18955155_18955361 chr2R_18954762_18954830;chr2R_18955470_18955651 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.85 100.00 98.28 100.00 100.00 97.44 100.00 100.00 96.43 100.00 100.00 98.51 98.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 100.00 100.00 98.77 100.00 98.78 100.00 100.00 100.00 100.00 97.78 97.44 100.00 100.00 98.36 99.06 K alternative_acceptor Atg18,I_chr3L_8182683_8182941 chr3L + chr3L_8180294_8180578;chr3L_8180294_8180540 chr3L_8180294_8180586 chr3L_8180118_8180293;chr3L_8180587_8180676 2.50 2.86 2.50 6.90 0.00 0.00 4.88 1.89 1.43 5.88 3.70 1.72 3.45 3.33 0.00 0.00 3.12 3.33 2.86 1.59 2.86 1.32 1.72 0.00 2.70 0.00 2.13 0.00 3.70 5.00 2.00 0.00 5.08 0.00 6.67 0.00 1.67 2.13 0.00 6.90 0.00 2.94 4.00 2.38 2.56 6.06 0.00 2.63 1.59 0.00 6.12 4.35 9.68 3.03 1.96 3.03 2.17 2.78 N intron_retention RpS20 chr3R + chr3R_16647996_16648154 chr3R_16647995_16647996;chr3R_16648154_16648155 chr3R_16647888_16647995;chr3R_16648155_16648294 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 39.90 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Rab11,I_chr3R_16937578_16940474,I_chr3R_16937759_16939667,RE_chr3R_16939259_16939667 chr3R + chr3R_16937578_16939667 chr3R_16937577_16937578;chr3R_16939667_16939668 chr3R_16937478_16937577;chr3R_16939668_16939767 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.33 0.00 0.50 0.00 0.14 0.00 0.34 0.00 0.00 0.51 0.00 0.53 1.04 0.86 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Myb,RI_chrX_15752571_15753225 chrX - chrX_15751579_15751673;chrX_15751579_15751709;chrX_15751579_15751749 chrX_15751579_15751682 chrX_15749823_15751578;chrX_15751750_15751876 8.11 3.85 8.11 6.90 4.00 7.14 11.67 7.89 9.30 6.25 15.38 5.63 7.69 10.00 2.86 7.69 13.16 3.45 4.17 8.99 14.29 3.12 12.20 5.00 6.67 6.45 10.34 5.88 8.70 11.11 11.32 18.18 23.26 7.59 9.09 0.00 10.00 6.67 5.00 8.93 10.53 11.54 13.51 2.63 13.04 8.11 10.53 7.84 5.56 6.67 11.11 15.38 4.76 21.43 6.12 14.29 15.00 8.62 K intron_retention CG3638,REI_chrX_1128310_1128786,RI_chrX_1128313_1128642,I_chrX_1128313_1129783,EI_chrX_1128313_1130453,I_chrX_1128313_1130466,RI_chrX_1128313_1130468,I_chrX_1132012_1132060 chrX - chrX_1128313_1128786 chrX_1128312_1128313;chrX_1128786_1128787 chrX_1128213_1128312;chrX_1128787_1128886 6.46 NA NA 12.50 NA NA NA 20.00 10.53 0.00 NA 10.53 NA NA 6.25 NA NA NA NA 4.35 NA NA 0.00 NA NA NA 5.26 NA 11.11 0.00 NA 6.25 1.28 14.29 9.09 6.25 0.00 NA 0.00 14.29 9.68 6.67 NA 10.81 11.11 13.04 NA 5.56 NA NA 6.25 NA 14.29 NA NA NA NA 4.65 K alternative_acceptor CG10321,I_chr2R_17522487_17522896 chr2R + chr2R_17522487_17522896 chr2R_17522487_17522885 chr2R_17522387_17522486;chr2R_17522897_17522996 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 93.33 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 92.86 95.00 90.91 100.00 93.33 90.91 100.00 94.74 93.75 100.00 100.00 96.67 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 91.67 100.00 90.91 100.00 100.00 100.00 100.00 91.67 100.00 92.31 94.12 100.00 NA K intron_retention CG6656,CG33092 chr3R + chr3R_17704031_17704090 chr3R_17704030_17704031;chr3R_17704090_17704091 chr3R_17703968_17704030;chr3R_17704091_17704102 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Adf1,CG15908_CG9410 chr2R + chr2R_2549942_2550073 chr2R_2549941_2549942;chr2R_2550073_2550074 chr2R_2549797_2549941;chr2R_2550074_2550262 46.41 42.86 38.10 52.17 30.77 50.00 55.56 41.38 40.62 NA 69.23 34.29 29.41 44.44 48.15 47.62 35.71 33.33 33.33 42.55 56.25 77.78 52.00 37.50 70.59 68.00 70.83 NA 77.78 46.15 38.46 33.33 47.06 40.00 43.75 72.22 42.11 42.11 54.55 51.61 73.33 46.15 44.44 57.14 66.67 66.67 55.56 52.63 41.86 36.84 50.00 NA 45.45 46.67 47.37 44.44 16.67 64.29 K alternative_acceptor CG9098 chr2L - chr2L_6011925_6011985 chr2L_6011936_6011985 chr2L_6011986_6012033;chr2L_6011861_6011924 78.57 NA NA 66.67 NA NA NA NA 76.92 NA NA 78.57 NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 91.67 NA NA 54.55 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 55.56 NA NA NA NA NA NA NA K intron_retention Arc-p34 chr2L + chr2L_20422237_20422301 chr2L_20422236_20422237;chr2L_20422301_20422302 chr2L_20422145_20422236;chr2L_20422302_20422411 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.72 0.35 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 1.50 3.78 0.00 0.00 0.00 0.00 0.18 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.33 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 N alternative_acceptor CG1092 chr3R + chr3R_92928_93014 chr3R_92928_92982 chr3R_92694_92927;chr3R_93015_94005 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG32687,I_chrX_10377592_10378408 chrX - chrX_10377592_10379743 chrX_10377592_10378408 chrX_10377492_10377591;chrX_10379744_10380660 0.00 0.00 0.00 5.00 0.00 0.00 0.00 4.76 3.12 NA NA 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 2.94 0.00 1.32 3.85 0.00 NA NA 0.00 4.35 0.00 0.00 0.00 0.00 4.55 0.00 11.11 5.88 0.00 0.00 0.00 4.17 6.67 3.12 0.00 4.76 4.76 3.85 0.00 5.26 3.70 4.76 4.76 0.00 4.17 0.00 0.00 0.00 2.33 3.85 N intron_retention CG9153,Myo61F chr3L + chr3L_1314321_1314885 chr3L_1314320_1314321;chr3L_1314885_1314886 chr3L_1314158_1314320;chr3L_1314886_1315612 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 75.76 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 42.86 40.00 100.00 NA NA 57.14 53.33 100.00 NA 73.91 NA 100.00 100.00 50.00 NA 100.00 100.00 68.42 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 K intron_retention Rtnl1,I_chr2L_4994995_4995154,I_chr2L_4994995_5006383,RE_chr2L_4994997_5008180,I_chr2L_4999312_5000248,I_chr2L_4999386_4999670,I_chr2L_4999386_5000201,I_chr2L_5004757_5006383,I_chr2L_5004775_5006231,I_chr2L_5004775_5006381,I_chr2L_5004775_5006392,I_chr2L_5027222_5028118 chr2L - chr2L_4994995_4997113 chr2L_4994994_4994995;chr2L_4997113_4997114 chr2L_4994897_4994994;chr2L_4997114_4997389 13.33 12.12 3.23 17.65 6.90 20.00 20.69 10.00 11.59 NA 5.41 17.50 24.14 9.09 9.52 13.95 16.67 13.79 17.07 21.74 3.33 NA 5.00 0.00 NA 20.00 19.05 NA NA 20.00 14.29 NA NA 14.29 4.00 NA 3.70 0.00 13.33 10.71 NA 14.29 15.38 15.00 25.00 6.67 9.68 25.00 10.71 11.11 16.67 4.76 3.85 NA 13.89 11.11 7.14 15.38 K alternative_acceptor CG7824 chr3R - chr3R_25684373_25684496 chr3R_25684441_25684496 chr3R_25684497_25684659;chr3R_25683370_25684372 95.45 95.24 90.91 82.35 100.00 90.00 97.37 100.00 97.78 92.86 94.12 95.24 87.50 91.30 96.30 100.00 94.44 96.00 100.00 89.47 95.45 96.43 90.48 100.00 100.00 100.00 95.24 100.00 95.65 95.24 95.65 95.24 95.24 97.50 100.00 100.00 92.31 95.65 96.00 95.83 95.45 95.45 95.24 95.65 90.00 91.67 95.24 92.31 97.67 100.00 93.75 100.00 90.32 89.29 92.31 91.30 93.33 97.44 K intron_retention yata chr3R + chr3R_25578454_25578551 chr3R_25578453_25578454;chr3R_25578551_25578552 chr3R_25578051_25578453;chr3R_25578552_25580252 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.90 0.00 0.00 1.41 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 K intron_retention Gel,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_66533_66599 chr3R_66532_66533;chr3R_66599_66600 chr3R_66433_66532;chr3R_66600_66699 56.25 52.94 38.46 77.78 NA NA 66.67 56.25 62.07 NA NA 33.33 35.71 NA NA 85.00 54.55 NA 61.54 66.67 NA NA 83.33 46.15 NA NA 50.00 NA 30.77 NA NA 41.67 63.64 45.16 61.54 NA NA NA NA 50.00 NA 45.45 62.50 61.54 NA 80.00 NA NA 44.00 73.33 58.33 NA 33.33 66.67 NA 50.00 45.00 58.82 K cassette CtBP chr3R + chr3R_8847365_8851110 chr3R_8847365_8850545;chr3R_8850752_8851110 chr3R_8850546_8850751 chr3R_8847142_8847364;chr3R_8851111_8851987 30.56 32.35 20.00 15.38 19.05 31.25 22.73 31.82 23.08 26.32 37.50 31.25 15.00 20.00 22.22 14.29 33.33 22.22 25.00 29.27 33.33 35.94 34.00 35.59 31.25 23.53 25.93 30.00 31.71 25.00 21.05 26.32 39.13 23.08 33.33 41.38 27.12 38.10 31.71 36.84 19.05 20.75 23.08 35.29 35.71 29.03 39.47 47.06 30.56 36.17 40.54 30.43 34.78 39.29 22.22 33.33 26.19 36.36 K alternative_donor eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341925_20342041;chr3L_20341636_20342041;chr3L_20341509_20342041;chr3L_20341865_20342041;chr3L_20341486_20342041;chr3L_20341751_20342041;chr3L_20341530_20342041;chr3L_20341629_20342041;chr3L_20341598_20342041;chr3L_20341759_20342041 chr3L_20341522_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 21.33 17.65 25.93 18.18 24.00 20.00 42.42 9.86 27.27 18.18 20.00 21.43 31.58 16.67 16.67 30.56 20.69 20.83 29.73 24.14 26.92 8.33 16.67 22.73 15.79 24.24 23.08 30.00 18.75 16.67 23.08 25.00 20.00 20.97 16.67 21.43 23.81 33.33 21.43 42.22 15.38 19.75 33.33 22.73 15.79 13.64 22.22 21.05 21.33 31.25 23.08 17.39 14.29 25.00 20.83 20.00 21.43 11.90 K jcn_only_AD Rga,I_chr3R_1436346_1436552,I_chr3R_1436346_1437602,I_chr3R_1436346_1437897,I_chr3R_1437726_1437791,Spec2 chr3R - chr3R_1436346_1436552;chr3R_1436346_1437897 chr3R_1436346_1437791 chr3R_1436246_1436345;chr3R_1437898_1437963 100.00 100.00 100.00 100.00 100.00 98.78 96.12 100.00 100.00 100.00 100.00 99.35 100.00 100.00 98.59 100.00 100.00 100.00 99.00 99.14 100.00 100.00 99.08 98.18 100.00 98.95 100.00 100.00 98.05 100.00 98.67 98.99 98.55 100.00 100.00 98.51 97.17 100.00 98.89 98.92 99.07 99.33 100.00 97.67 100.00 99.29 98.61 100.00 99.36 100.00 98.90 100.00 97.44 100.00 100.00 100.00 98.70 99.46 K alternative_acceptor cwo,noncoding_15870,chr3R_6215619_6216520.0,chr3R_6216827_6217291.0,chr3R_6217556_6219555.0,chr3R_6219984_6221958.0 chr3R + chr3R_6215160_6222426;chr3R_6215160_6222418 chr3R_6215160_6222423 chr3R_6214846_6215159;chr3R_6222427_6222542 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 20.00 NA 0.00 20.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 K alternative_acceptor Amun,I_chrX_11607839_11608272,I_chrX_11607842_11608105,I_chrX_11607842_11608125,RI_chrX_11607842_11608272 chrX - chrX_11607722_11607787;chrX_11607718_11607787 chrX_11607631_11607787 chrX_11607788_11607838;chrX_11606802_11607630 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261460_265805 chr4_261460_263113;chr4_263306_263801;chr4_264212_264259;chr4_264375_265805 chr4_263114_263305;chr4_263802_264211;chr4_264260_264374 chr4_261360_261459;chr4_265806_265905 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K multi_cassette CG11266,RI_chr2L_7033019_7033182,RI_chr2L_7033019_7034180,RI_chr2L_7033019_7034764,I_chr2L_7034274_7034764,I_chr2L_7034274_7035406,RI_chr2L_7034911_7035074,I_chr2L_7051093_7051366 chr2L + chr2L_7033019_7035074 chr2L_7033019_7034483;chr2L_7034694_7034764;chr2L_7034911_7035074 chr2L_7034484_7034693;chr2L_7034765_7034910 chr2L_7032919_7033018;chr2L_7035075_7035123 80.00 NA 100.00 66.67 NA NA 83.33 83.33 80.00 NA NA 90.00 80.00 75.00 NA 77.78 60.00 NA 83.33 80.00 NA 75.00 NA NA NA NA 100.00 NA NA NA 75.00 NA NA 60.00 80.00 NA NA NA NA 66.67 NA 87.50 66.67 100.00 NA NA NA 50.00 83.33 NA 100.00 NA NA NA 60.00 80.00 NA 42.86 K jcn_only_AD CG7324,I_chr3L_21335553_21335702,I_chr3L_21340055_21342206 chr3L - chr3L_21335553_21336030 chr3L_21335553_21335702 chr3L_21335453_21335552;chr3L_21336031_21336197 0.94 0.00 1.16 0.80 2.06 1.19 2.60 2.92 0.46 0.00 0.00 0.53 2.50 1.19 0.00 2.15 1.19 1.33 0.00 0.00 3.17 5.56 0.94 1.98 0.00 0.00 0.94 2.44 0.00 0.00 2.11 0.00 2.04 0.68 1.54 0.00 1.98 0.00 2.67 0.00 0.00 1.16 0.00 1.90 0.00 2.38 1.82 1.96 0.00 0.00 1.05 0.00 2.94 0.00 0.00 0.00 1.92 2.17 K cassette dre4,I_chr3L_1875590_1875651,F_chr3L_1877432_1877517 chr3L - chr3L_1871918_1872581 chr3L_1871918_1872353;chr3L_1872471_1872581 chr3L_1872354_1872470 chr3L_1871528_1871917;chr3L_1872582_1872735 22.59 22.59 9.61 48.43 17.93 17.05 28.52 24.03 18.69 30.72 27.53 28.57 22.62 11.30 25.00 11.94 31.29 21.59 21.00 25.61 25.90 18.38 24.30 29.06 25.21 18.54 21.20 15.21 12.81 14.78 23.58 19.78 15.80 21.97 25.45 32.56 22.55 22.43 22.38 19.22 23.58 18.26 24.53 29.10 26.45 24.08 22.73 21.11 21.92 19.77 23.98 23.98 20.00 18.98 25.79 22.04 27.73 22.97 K intron_retention Gint3,CG42306 chr2R - chr2R_14547630_14547699 chr2R_14547629_14547630;chr2R_14547699_14547700 chr2R_14547491_14547629;chr2R_14547700_14547709 0.00 0.00 0.00 1.03 0.00 0.00 1.20 0.00 0.00 1.30 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.54 0.00 0.54 0.00 0.00 0.94 1.09 3.62 0.00 1.71 0.00 1.68 0.71 0.00 2.65 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389714_9390195;chr2R_9389597_9390195;chr2R_9389430_9390195 chr2R_9389400_9390195 chr2R_9390196_9390251;chr2R_9389318_9389399 0.00 1.79 0.00 1.23 0.00 0.00 2.02 1.37 0.00 0.00 2.08 0.00 0.00 2.38 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 1.61 3.12 3.03 1.11 0.00 1.06 1.75 0.00 0.00 1.06 NA 0.00 2.78 0.00 0.00 0.00 2.56 0.00 0.00 0.00 1.49 0.00 0.00 1.39 0.00 0.00 2.00 0.00 K intron_retention tun,RI_chr2R_11736435_11739892 chr2R + chr2R_11737185_11739892 chr2R_11737184_11737185;chr2R_11739892_11739893 chr2R_11736113_11737184;chr2R_11739893_11739992 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 1.14 0.00 0.00 2.15 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 4.88 0.00 2.44 0.00 0.00 0.00 6.00 7.27 0.00 0.00 4.44 2.35 0.00 0.00 0.00 0.98 0.00 0.00 1.05 3.92 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 1.14 0.00 K intron_retention Rtc1,I_chrX_13652113_13652182,I_chrX_13653840_13653902 chrX + chrX_13652340_13652392 chrX_13652339_13652340;chrX_13652392_13652393 chrX_13652183_13652339;chrX_13652393_13652797 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 2.94 0.00 0.00 1.82 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 1.52 N jcn_only_AD I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545799_17545850;chr2R_17545615_17545850;chr2R_17545781_17545850;chr2R_17545686_17545850;chr2R_17545690_17545850 chr2R_17545767_17545850 chr2R_17545851_17545985;chr2R_17545613_17545614 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 17.57 0.00 0.00 0.00 0.00 0.00 0.00 25.00 0.00 18.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chrX_1954878_1955077,CG4281,CG14054,I_chrX_1962457_1964222 chrX - chrX_1956626_1956692 chrX_1956625_1956626;chrX_1956692_1956693 chrX_1956347_1956625;chrX_1956693_1956924 98.33 96.61 98.51 96.51 100.00 97.92 98.78 100.00 98.47 97.67 97.78 99.12 97.26 98.31 98.55 97.22 98.25 100.00 98.78 97.69 100.00 97.73 98.67 98.61 100.00 100.00 98.53 95.74 98.21 98.21 98.13 96.49 97.92 97.48 98.41 98.11 98.61 94.00 98.51 99.12 100.00 100.00 98.44 98.61 96.67 99.12 98.55 97.89 97.93 96.26 97.65 100.00 96.08 98.33 98.91 100.00 97.89 96.77 K alternative_donor Cyp1,RI_chrX_16212641_16213159,RI_chrX_16212641_16213308,I_chrX_16212641_16213680,I_chrX_16212641_16213960 chrX - chrX_16212641_16213960;chrX_16212641_16213308 chrX_16212641_16214111 chrX_16212541_16212640;chrX_16214112_16214235 99.79 99.86 99.65 99.58 99.71 99.73 99.61 99.75 99.70 99.87 99.69 99.74 99.59 99.50 99.67 99.28 99.52 99.70 99.50 99.64 99.86 99.86 99.84 99.87 99.79 99.74 99.65 98.47 99.70 99.86 99.57 99.90 99.85 99.54 99.84 99.79 99.79 99.83 99.84 99.79 99.90 99.79 99.86 99.80 99.87 99.87 99.82 99.93 99.74 99.87 99.82 99.91 99.87 99.83 99.64 99.84 99.89 99.90 K intron_retention I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499338_1499771 chr3L_1499337_1499338;chr3L_1499771_1499772 chr3L_1499043_1499337;chr3L_1499772_1499871 87.50 NA 88.89 75.86 NA 84.62 NA 95.24 94.44 70.00 91.67 88.89 78.12 93.33 92.86 93.75 90.00 72.73 93.75 84.62 NA 91.67 87.50 76.92 87.50 NA 83.33 75.00 90.00 88.89 86.67 70.00 87.50 94.44 75.00 NA 100.00 90.91 71.43 95.45 93.33 95.00 100.00 90.00 66.67 83.33 75.00 76.92 88.00 78.57 82.35 78.57 NA 88.89 78.57 69.23 87.50 87.50 K jcn_only_AD ATPsyn-d chr3R + chr3R_14920744_14921118 chr3R_14920797_14921118 chr3R_14921119_14921792;chr3R_14920714_14920743 86.99 88.70 84.05 91.07 85.52 79.83 89.66 79.78 86.29 86.67 84.67 82.92 89.15 92.17 85.12 84.00 88.14 82.03 86.93 83.51 80.72 94.64 85.53 86.99 91.43 89.09 87.50 82.00 92.31 88.46 84.43 84.89 89.44 88.03 88.89 95.65 90.66 81.75 81.29 76.04 89.74 80.88 86.09 87.10 84.62 91.67 91.79 91.28 82.38 94.81 83.33 94.17 80.17 93.62 84.95 87.02 90.04 88.03 K intron_retention mew,I_chrX_13133259_13150649 chrX - chrX_13111020_13111093 chrX_13111019_13111020;chrX_13111093_13111094 chrX_13109952_13111019;chrX_13111094_13111233 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.42 0.82 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 1.00 0.00 0.00 0.00 3.17 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 2.04 1.38 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Akap200,I_chr2L_8426446_8426873 chr2L + chr2L_8428068_8430280 chr2L_8428067_8428068;chr2L_8430280_8430281 chr2L_8427615_8428067;chr2L_8430281_8431026 6.25 5.28 9.91 14.47 5.88 5.43 12.35 6.64 9.46 2.80 12.55 6.91 2.92 6.25 5.46 12.85 11.25 4.06 9.04 14.04 12.32 10.66 5.63 4.15 4.46 3.95 5.92 6.51 4.30 9.94 8.39 9.93 15.73 7.88 5.14 10.48 8.16 3.61 4.42 4.57 6.72 8.13 10.81 9.94 4.60 5.08 4.70 15.71 7.87 2.79 5.02 3.61 5.56 3.48 5.34 4.58 6.12 15.68 K intron_retention CG32549,I_chrX_18286136_18286367,I_chrX_18286289_18286367,RI_chrX_18301919_18303082 chrX - chrX_18286194_18286367 chrX_18286193_18286194;chrX_18286367_18286368 chrX_18286189_18286193;chrX_18286368_18286467 0.58 0.00 0.00 1.27 0.00 0.00 1.51 1.52 1.87 0.91 2.04 1.92 0.00 1.64 1.32 0.00 0.00 0.00 0.78 0.77 0.00 0.63 0.40 0.00 0.00 0.00 2.04 0.83 2.52 0.00 0.78 1.23 1.35 1.05 0.00 1.97 0.00 0.00 0.00 1.16 0.00 0.00 1.79 0.58 0.00 0.00 0.60 0.00 0.91 0.64 0.00 0.00 2.27 2.05 1.42 0.00 0.00 0.00 K intron_retention par-1,RI_chr2R_15348122_15356294,I_chr2R_15355073_15356294,RI_chr2R_15355419_15356294,I_chr2R_15359251_15360944,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15355419_15356294 chr2R_15355418_15355419;chr2R_15356294_15356295 chr2R_15355319_15355418;chr2R_15356295_15356318 46.26 NA NA NA NA NA NA NA 47.06 NA NA NA NA NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG16791 chr3R - chr3R_17149949_17160425 chr3R_17149949_17160248 chr3R_17149943_17149948;chr3R_17160426_17160490 96.55 96.55 93.10 85.29 NA NA 100.00 93.33 95.74 NA NA 95.92 100.00 100.00 NA NA NA NA 100.00 94.29 NA NA NA 85.00 NA 100.00 NA NA NA NA NA NA 100.00 97.73 NA NA NA 95.24 100.00 82.14 NA 88.10 95.45 100.00 NA 100.00 NA 100.00 93.75 NA 93.75 100.00 NA NA 96.55 95.83 NA 100.00 K jcn_only_AA R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8088517_8089393 chr2L_8088517_8089184 chr2L_8088459_8088516;chr2L_8089394_8089493 65.28 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 76.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 54.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor Vha16,I_chr2R_2519645_2520499,RI_chr2R_2519646_2519840,I_chr2R_2519646_2520292,I_chr2R_2519646_2520298,I_chr2R_2519775_2520499 chr2R - chr2R_2519646_2519828 chr2R_2519646_2519810 chr2R_2519546_2519645;chr2R_2519829_2519868 22.70 19.77 18.68 23.66 20.34 20.36 39.86 31.83 22.55 23.02 19.49 26.77 27.03 23.53 22.09 31.11 22.17 21.52 21.78 27.95 21.79 20.90 24.57 22.02 30.43 34.67 29.27 25.88 34.34 18.84 24.68 25.81 27.45 26.72 23.16 37.88 23.66 20.30 18.22 35.51 28.85 19.09 20.76 23.35 18.40 24.56 14.49 22.70 20.44 18.52 24.63 25.00 16.92 19.57 22.51 19.10 14.36 14.29 K alternative_acceptor CG16700,I_chrX_16989598_16989917 chrX + chrX_16989598_16990317 chrX_16989598_16989917 chrX_16989498_16989597;chrX_16990318_16990678 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA mRpS18B chr2L - chr2L_20096791_20096865 chr2L_20096804_20096865 chr2L_20096866_20097174;chr2L_20096431_20096790 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.01 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 98.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9003918_9004854 chrX_9003917_9003918;chrX_9004854_9004855 chrX_9003588_9003917;chrX_9004855_9004862 100.00 NA NA 100.00 NA NA 90.00 NA 90.91 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 100.00 100.00 NA NA NA NA 100.00 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA K intron_retention CG6656,RI_chr3R_17701533_17702073,RI_chr3R_17702199_17702274,CG33092 chr3R + chr3R_17701353_17701436 chr3R_17701352_17701353;chr3R_17701436_17701437 chr3R_17701088_17701352;chr3R_17701437_17701532 6.86 5.68 5.56 23.40 6.45 9.41 16.22 4.49 7.73 10.71 12.24 6.21 15.69 7.69 6.60 8.16 6.67 5.43 8.14 7.66 9.86 5.49 6.93 6.25 13.16 9.76 13.89 17.74 23.33 6.98 11.36 3.39 6.50 5.84 11.48 16.67 3.41 11.94 7.26 6.40 10.81 6.11 6.33 5.06 5.48 6.67 8.24 3.61 6.17 5.26 8.27 5.71 4.44 2.50 6.86 9.21 6.25 3.12 K intron_retention CG8928 chrX + chrX_15839362_15839429 chrX_15839361_15839362;chrX_15839429_15839430 chrX_15839086_15839361;chrX_15839430_15839922 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.83 0.00 0.00 1.82 0.00 0.00 0.00 0.00 2.33 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 1.52 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention zf30C chr2L + chr2L_9761500_9761564 chr2L_9761499_9761500;chr2L_9761564_9761565 chr2L_9760121_9761499;chr2L_9761565_9762377 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 1.54 0.00 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 5.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 K intron_retention CG7337,I_chr2L_1910010_1910066,I_chr2L_1938620_1938887,I_chr2L_1942183_1942233 chr2L + chr2L_1937584_1937865 chr2L_1937583_1937584;chr2L_1937865_1937866 chr2L_1937441_1937583;chr2L_1937866_1937910 0.00 0.00 0.00 12.12 0.00 0.00 21.43 0.00 2.70 0.00 NA 1.89 3.57 0.00 0.00 4.44 0.00 0.00 0.00 3.28 0.00 0.00 4.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 4.84 5.00 0.00 0.00 11.76 0.00 0.00 0.00 3.08 8.00 0.00 0.00 NA NA 5.00 3.45 NA 7.14 NA NA NA 0.00 NA NA NA K intron_retention Uba1,I_chr2R_5579209_5579407 chr2R - chr2R_5579209_5579786 chr2R_5579208_5579209;chr2R_5579786_5579787 chr2R_5579109_5579208;chr2R_5579787_5580879 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG33967 chr3R - chr3R_10525521_10525582 chr3R_10525520_10525521;chr3R_10525582_10525583 chr3R_10525400_10525520;chr3R_10525583_10525894 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CtBP chr3R + chr3R_8837419_8845063 chr3R_8837418_8837419;chr3R_8845063_8845064 chr3R_8837339_8837418;chr3R_8845064_8845536 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 NA NA NA K alternative_donor RpS18,CG8908,EI_chr2R_16151918_16151997,I_chr2R_16151918_16152036,I_chr2R_16151938_16152065,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151918_16151997;chr2R_16151942_16151997 chr2R_16151938_16151997 chr2R_16151998_16152066;chr2R_16151852_16151917 99.87 99.85 99.79 99.88 99.93 99.85 99.87 99.83 99.87 99.92 99.83 99.84 99.83 99.90 99.93 99.75 99.78 99.87 99.92 99.84 99.80 99.73 99.87 99.88 99.80 99.81 99.88 99.75 99.69 99.94 99.73 99.93 99.89 99.88 99.86 99.85 99.88 99.89 99.87 99.89 99.91 99.90 99.82 99.90 99.98 99.80 99.92 99.95 99.83 99.96 99.89 99.86 99.86 99.93 99.82 99.88 99.97 99.93 K intron_retention Rm62 chr3R - chr3R_1831020_1833758 chr3R_1831019_1831020;chr3R_1833758_1833759 chr3R_1830928_1831019;chr3R_1833759_1834028 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 5.00 0.00 0.00 0.00 0.00 0.00 NA 2.70 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG2186 chrX + chrX_10751969_10752320 chrX_10751976_10752320 chrX_10752321_10752412;chrX_10751743_10751968 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 1.47 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 NA K jcn_only_AA mus210,RI_chr2R_11200323_11202068,RI_chr2R_11200323_11202128,chr2R_11200326_11200570.0,chr2R_11200670_11201286.0 chr2R + chr2R_11200323_11202122 chr2R_11200323_11202068 chr2R_11200223_11200322;chr2R_11202123_11202168 3.17 2.00 0.00 3.74 0.00 0.00 9.24 3.47 2.88 6.38 0.00 2.81 2.08 1.43 2.17 6.38 6.45 1.28 0.00 1.27 3.08 15.96 2.11 3.85 8.18 7.29 2.23 2.22 12.09 3.73 1.98 4.08 7.92 0.73 4.07 23.42 3.31 3.17 4.59 6.16 14.63 3.14 4.29 0.88 0.00 6.82 7.04 6.00 3.05 4.69 3.18 1.49 3.33 7.27 0.73 0.00 0.00 2.63 K intron_retention CG12393,CG9135 chr2L + chr2L_6049633_6050073 chr2L_6049632_6049633;chr2L_6050073_6050074 chr2L_6049414_6049632;chr2L_6050074_6050424 2.00 5.71 0.00 3.23 0.00 0.00 0.00 4.76 4.35 0.00 0.00 2.13 0.00 0.00 2.38 0.00 4.35 0.00 0.00 7.32 0.00 4.44 0.00 4.35 19.05 7.69 10.81 3.12 2.70 0.00 5.71 5.41 0.00 6.67 0.00 6.25 0.00 0.00 1.89 1.28 0.00 0.00 0.00 6.06 0.00 4.92 5.00 2.00 2.56 1.92 6.82 0.00 6.25 4.65 0.00 2.44 7.27 0.00 K intron_retention Cctgamma chr3R + chr3R_12473652_12473709 chr3R_12473651_12473652;chr3R_12473709_12473710 chr3R_12473558_12473651;chr3R_12473710_12473771 2.87 2.51 3.06 1.78 2.33 2.63 3.49 3.76 1.66 4.58 2.95 2.09 3.40 1.73 2.91 1.26 2.60 2.40 2.73 2.45 4.76 4.11 2.12 2.91 9.23 7.04 7.81 3.69 20.81 1.82 6.47 1.35 1.17 1.66 4.09 9.77 1.71 3.72 3.12 1.80 7.10 2.65 3.59 2.21 2.93 2.72 1.15 3.35 2.39 3.64 2.99 3.32 1.90 2.03 3.17 1.82 1.58 2.87 K intron_retention I_chrX_4354139_4456637,rb chrX - chrX_4431465_4431518 chrX_4431464_4431465;chrX_4431518_4431519 chrX_4430565_4431464;chrX_4431519_4432742 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG15609,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12902708_12903163;chr2R_12902708_12903198;chr2R_12902708_12903167 chr2R_12902708_12903184 chr2R_12902608_12902707;chr2R_12903199_12903284 0.00 0.00 0.00 0.00 0.00 0.00 3.33 5.41 0.00 0.00 0.00 7.41 0.00 5.56 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 3.70 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 6.67 7.69 0.00 0.00 2.86 0.00 0.00 16.67 0.00 0.00 0.00 0.00 0.00 3.33 0.00 11.11 9.09 0.00 8.33 0.00 0.00 K intron_retention A16 chr2L - chr2L_13019730_13019797 chr2L_13019729_13019730;chr2L_13019797_13019798 chr2L_13019569_13019729;chr2L_13019798_13019926 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG8232 chr2R + chr2R_4818153_4818214 chr2R_4818156_4818214 chr2R_4818215_4818510;chr2R_4818096_4818152 95.65 93.75 94.23 96.81 92.11 96.00 97.06 98.00 94.79 91.30 100.00 98.72 94.44 100.00 97.73 97.01 98.28 97.67 93.65 95.60 96.43 93.75 95.38 100.00 97.06 96.00 88.64 NA 100.00 100.00 95.65 92.31 96.00 97.62 100.00 94.74 93.65 97.56 94.74 93.75 96.43 94.00 90.91 98.15 96.00 90.48 94.59 97.50 97.96 94.87 95.65 95.45 95.24 92.31 95.12 91.89 94.59 96.97 K jcn_only_AA CG5001,I_chr2L_1191535_1191648 chr2L + chr2L_1192199_1192267 chr2L_1192199_1192255 chr2L_1191970_1192198;chr2L_1192268_1192625 50.00 52.78 51.35 45.45 50.00 48.65 50.00 65.00 56.00 NA 65.38 50.00 NA 56.00 40.00 55.56 42.50 41.94 55.56 55.36 66.67 62.86 56.25 44.00 NA 46.67 59.26 NA 54.55 47.37 27.59 NA 40.74 41.46 34.48 NA 44.74 30.77 31.03 37.50 NA 52.44 36.36 59.26 65.00 56.67 45.95 44.83 44.83 52.00 41.03 50.00 46.15 60.00 61.54 63.46 60.00 NA K alternative_acceptor gish chr3R + chr3R_12100598_12100709 chr3R_12100598_12100675 chr3R_12100535_12100597;chr3R_12100710_12100891 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.82 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.04 100.00 96.30 100.00 100.00 100.00 98.00 K alternative_donor nmd,CG5390 chr2L - chr2L_10303599_10303782 chr2L_10303599_10303654 chr2L_10302457_10303598;chr2L_10303783_10303945 98.68 98.53 100.00 98.28 100.00 98.68 99.18 99.28 99.35 92.98 98.33 99.32 98.84 98.72 99.00 99.13 100.00 98.75 98.97 99.50 98.48 98.63 96.04 98.92 95.24 98.00 98.90 98.70 97.67 98.70 97.09 96.63 97.62 99.26 98.31 91.67 98.81 98.28 97.87 96.64 96.74 98.84 100.00 98.80 95.45 98.18 98.78 97.09 99.39 98.46 95.96 98.53 98.67 96.72 99.08 100.00 99.00 97.83 K jcn_only_AA I_chr2L_476332_525391,ush chr2L + chr2L_491359_536022 chr2L_491359_525391 chr2L_490856_491358 97.01 96.36 95.83 94.20 98.00 97.62 98.08 96.12 96.33 97.56 94.74 96.15 97.78 96.08 94.00 98.57 100.00 95.92 100.00 95.10 98.04 98.28 98.89 94.32 96.08 95.16 97.22 97.22 89.13 95.45 100.00 100.00 98.29 98.78 96.43 98.63 92.65 100.00 97.92 96.70 95.92 100.00 93.88 94.44 95.24 98.44 98.36 98.77 100.00 88.52 94.81 95.65 98.08 95.45 97.01 98.31 96.15 98.44 K intron_retention Dpck,EI_chr3R_2912813_2912955 chr3R + chr3R_2908111_2908195 chr3R_2908110_2908111;chr3R_2908195_2908196 chr3R_2907953_2908110;chr3R_2908196_2908487 0.00 0.00 0.00 4.08 NA 0.00 9.09 2.22 2.27 NA 0.00 3.23 7.69 0.00 0.00 16.67 0.00 0.00 3.33 1.72 0.00 6.25 7.32 0.00 0.00 0.00 3.23 NA 7.41 0.00 0.00 6.67 0.00 0.00 0.00 0.00 8.00 0.00 0.00 3.17 3.70 5.00 0.00 0.00 0.00 3.33 0.00 0.00 1.92 4.00 7.32 0.00 4.17 0.00 0.00 4.65 8.51 1.37 K intron_retention tral,I_chr3L_12511355_12511540,I_chr3L_12512171_12512251 chr3L + chr3L_12511355_12511537 chr3L_12511354_12511355;chr3L_12511537_12511538 chr3L_12511255_12511354;chr3L_12511538_12511767 0.62 0.00 1.10 3.64 0.00 0.00 2.04 1.42 1.65 1.60 0.00 0.53 1.34 0.00 1.06 0.00 0.83 0.62 1.26 1.01 0.00 1.06 1.20 0.50 0.00 0.64 0.00 0.00 0.00 1.43 2.86 0.00 0.00 1.00 0.00 0.00 0.64 0.00 1.08 3.95 0.00 1.50 3.45 0.00 1.27 0.61 0.00 2.44 1.33 0.00 1.14 1.48 0.00 0.00 0.00 0.00 0.58 1.24 K intron_retention CG31211 chr3R + chr3R_7778778_7778834 chr3R_7778777_7778778;chr3R_7778834_7778835 chr3R_7778549_7778777;chr3R_7778835_7779756 47.56 41.67 51.16 64.29 59.09 57.89 54.39 62.07 56.57 51.52 57.58 51.14 47.06 51.43 52.94 61.54 67.74 62.16 54.55 61.17 53.66 47.83 40.00 40.00 50.00 75.00 61.11 48.84 45.61 37.33 58.70 27.94 37.50 56.45 38.89 63.89 30.56 44.00 36.92 29.70 46.03 47.56 57.58 28.21 34.09 34.62 31.51 28.57 44.94 48.15 41.94 37.50 27.03 37.50 41.67 40.00 35.53 30.34 K intron_retention CG6448 chr2L + chr2L_22144281_22145670 chr2L_22144280_22144281;chr2L_22145670_22145671 chr2L_22141834_22144280;chr2L_22145671_22146996 0.00 NA NA NA NA NA 0.00 0.00 3.57 11.76 NA 5.56 NA NA NA NA NA NA NA 6.45 NA 0.00 10.00 0.00 NA NA NA 0.00 4.76 6.67 0.00 0.00 2.86 0.00 NA 0.00 9.52 0.00 NA 0.00 0.00 3.70 NA 0.00 NA 8.33 NA 0.00 5.88 0.00 0.00 NA NA NA 0.00 NA 7.14 0.00 K intron_retention RI_chr3R_1426370_1426736,asl chr3R - chr3R_1431996_1432051 chr3R_1431995_1431996;chr3R_1432051_1432052 chr3R_1430163_1431995;chr3R_1432052_1432225 0.64 0.00 1.45 4.35 0.00 0.00 0.00 1.14 2.38 0.00 0.00 1.98 0.00 4.65 1.33 0.00 0.00 0.00 0.00 1.52 0.00 1.47 3.92 0.00 7.41 5.63 3.51 1.82 6.25 5.62 1.49 0.00 2.79 1.03 0.00 0.00 1.67 0.00 6.35 0.64 5.06 0.82 0.00 1.27 0.00 0.00 3.45 1.44 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 1.06 K alternative_acceptor Tfb1 chr2R + chr2R_10250584_10250756 chr2R_10250584_10250749 chr2R_10250565_10250583;chr2R_10250757_10251018 95.53 85.71 92.86 100.00 93.75 93.33 90.00 95.83 100.00 90.91 100.00 95.24 NA 100.00 94.12 100.00 100.00 100.00 92.31 95.83 100.00 100.00 93.75 100.00 88.89 93.75 100.00 100.00 100.00 90.91 95.00 90.00 95.83 95.00 NA 92.86 100.00 100.00 100.00 81.82 100.00 96.67 100.00 55.56 95.83 92.31 100.00 92.86 89.29 100.00 100.00 87.50 81.82 NA 94.12 100.00 87.50 92.86 K jcn_only_AD mav,RI_chr4_645290_646129 chr4 - chr4_645290_646129 chr4_645290_645397 chr4_645190_645289;chr4_646130_646229 97.34 NA 100.00 98.31 NA 95.00 92.68 100.00 98.44 NA NA 100.00 87.50 100.00 NA 96.67 NA NA 97.62 96.30 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 95.65 NA NA NA NA 91.67 NA 91.53 100.00 NA NA 96.97 NA 97.06 98.36 NA 96.30 NA NA NA 100.00 NA NA 92.86 K intron_retention CG8372,RI_chr2L_8212717_8212766,RI_chr2L_8212802_8212867 chr2L - chr2L_8212717_8212766 chr2L_8212716_8212717;chr2L_8212766_8212767 chr2L_8212702_8212716;chr2L_8212767_8212801 100.00 100.00 100.00 100.00 NA 100.00 100.00 95.45 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 92.86 92.31 95.45 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 94.44 100.00 100.00 94.12 96.15 100.00 100.00 92.86 100.00 95.83 100.00 100.00 95.65 100.00 100.00 95.45 100.00 100.00 N alternative_acceptor CG6199 chr3L - chr3L_11192493_11195314 chr3L_11195174_11195314 chr3L_11195315_11195440;chr3L_11192366_11192492 1.54 1.43 1.43 1.75 1.67 2.00 2.35 1.49 1.10 4.76 2.70 0.88 1.52 1.61 2.70 1.06 1.45 1.54 1.35 1.64 1.52 2.22 1.59 1.37 2.78 1.41 1.67 3.12 1.67 1.89 2.63 1.72 0.96 0.78 2.13 2.27 1.49 2.44 1.37 0.61 2.13 1.53 1.47 0.63 1.39 1.37 2.13 0.85 1.68 1.37 1.41 2.38 1.47 2.94 1.19 1.67 1.79 0.81 K jcn_only_AA TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748981_19750012 chr2R_19748984_19750012 chr2R_19750013_19750013;chr2R_19748884_19748980 48.00 NA NA NA NA NA NA 45.16 NA NA NA 48.00 NA NA 55.00 35.00 NA NA NA 37.04 NA NA NA NA NA NA NA NA NA NA 52.78 NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG17838 chr3R + chr3R_16618278_16622865 chr3R_16618278_16619437;chr3R_16619574_16622865 chr3R_16619438_16619573 chr3R_16618036_16618277;chr3R_16622866_16622999 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 93.75 100.00 100.00 100.00 87.50 96.15 100.00 88.89 94.12 92.31 85.71 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 97.67 100.00 94.74 NA 100.00 NA 100.00 97.44 100.00 94.12 100.00 NA NA 100.00 100.00 NA 100.00 K jcn_only_AA Rbp1,Mcm5 chr3R + chr3R_6610646_6611879 chr3R_6610646_6611124 chr3R_6610279_6610645;chr3R_6611880_6612229 24.70 15.95 21.05 46.36 NA 17.39 22.81 40.15 26.34 23.77 50.72 26.84 39.06 31.33 22.47 37.18 42.47 25.30 35.82 26.19 32.08 25.00 16.81 18.00 16.67 26.03 26.97 23.40 22.14 33.06 39.13 23.68 24.83 31.11 22.43 19.33 24.58 12.78 16.67 23.15 19.51 27.80 27.78 31.63 26.39 28.00 17.51 31.58 29.38 14.93 22.16 18.02 15.93 7.87 24.47 16.32 18.07 29.89 K alternative_donor CG32230,RI_chr3L_23332465_23332529,RI_chr3L_23332577_23334556,RI_chr3L_23332781_23338942 chr3L + chr3L_23332465_23332529 chr3L_23332470_23332529 chr3L_23332530_23332576;chr3L_23332425_23332464 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 NA 100.00 100.00 90.91 100.00 93.33 93.33 100.00 100.00 100.00 100.00 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 95.83 90.91 NA NA NA NA NA 100.00 NA NA NA NA NA 88.24 NA NA NA K intron_retention lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3963954_3965235 chr2R_3963953_3963954;chr2R_3965235_3965236 chr2R_3963798_3963953;chr2R_3965236_3966123 7.17 5.65 7.63 5.13 7.44 7.69 6.79 5.96 6.62 8.33 8.80 7.57 25.93 7.14 5.26 10.68 6.54 9.35 7.96 7.19 6.73 6.72 7.43 5.17 7.65 3.68 7.81 26.04 7.04 7.89 5.13 9.77 7.55 7.39 7.43 3.52 7.09 6.28 6.19 7.17 10.10 7.77 8.05 9.15 4.08 5.48 4.63 10.42 7.02 6.21 5.61 8.08 6.28 4.15 8.33 6.14 2.71 8.79 K intron_retention Mvl,RI_chr3R_16877854_16877923,E_chr3R_16880765_16881066 chr3R - chr3R_16877965_16881066 chr3R_16877964_16877965;chr3R_16881066_16881067 chr3R_16877924_16877964;chr3R_16881067_16881137 2.90 0.00 4.23 5.21 0.00 1.69 6.02 6.19 4.94 0.00 5.13 0.91 4.29 3.64 2.15 11.76 2.27 7.27 2.99 2.44 4.76 2.08 0.00 3.45 2.50 3.57 3.85 15.56 3.77 0.00 3.45 0.00 6.35 2.27 0.00 3.28 1.23 3.77 3.85 2.70 0.00 3.17 2.17 0.00 2.94 0.00 3.23 3.77 4.20 2.94 2.44 0.00 2.04 0.00 2.53 2.90 2.15 0.00 K intron_retention nmdyn-D7 chr3R + chr3R_5506163_5506220 chr3R_5506162_5506163;chr3R_5506220_5506221 chr3R_5505996_5506162;chr3R_5506221_5506388 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.13 NA 0.00 0.00 5.26 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention puc,CG7878,I_chr3R_3952846_3953762 chr3R + chr3R_3932462_3933953 chr3R_3932461_3932462;chr3R_3933953_3933954 chr3R_3932456_3932461;chr3R_3933954_3934100 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 40.00 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention PNUTS,I_chr2L_870553_871317 chr2L + chr2L_873540_875037 chr2L_873539_873540;chr2L_875037_875038 chr2L_872208_873539;chr2L_875038_877032 22.22 26.32 36.67 16.95 41.94 32.56 33.33 50.00 33.78 10.42 20.00 33.33 30.77 45.71 37.78 35.29 32.43 23.68 47.22 27.40 22.22 11.43 11.59 18.03 12.77 38.89 26.09 19.35 17.44 13.79 48.39 22.22 14.47 49.18 34.21 13.16 12.50 12.24 15.52 25.23 16.67 38.46 39.39 11.11 19.35 32.76 20.00 15.38 39.02 19.67 12.28 16.67 21.43 16.13 43.59 15.56 31.25 21.74 K intron_retention PyK,CG7069,CG18596,I_chr3R_18203637_18203690,I_chr3R_18209085_18209133 chr3R + chr3R_18198105_18198190 chr3R_18198104_18198105;chr3R_18198190_18198191 chr3R_18197948_18198104;chr3R_18198191_18198469 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 K intron_retention Hr39,I_chr2L_21256047_21256260 chr2L + chr2L_21237347_21238280 chr2L_21237346_21237347;chr2L_21238280_21238281 chr2L_21237247_21237346;chr2L_21238281_21238529 43.88 50.00 66.67 57.89 NA NA 64.29 50.00 36.67 60.00 NA 42.86 30.77 53.85 NA 33.33 NA NA NA 50.00 63.64 NA 29.17 36.36 41.67 36.36 33.33 NA NA NA 30.77 NA 81.82 45.00 43.75 50.00 NA NA 38.46 32.14 NA 34.78 NA 27.78 NA NA NA 47.37 44.00 NA 50.00 40.00 NA NA 46.15 NA NA NA K intron_retention CG17331,RI_chr2L_16731891_16731942 chr2L - chr2L_16731578_16731642 chr2L_16731577_16731578;chr2L_16731642_16731643 chr2L_16731103_16731577;chr2L_16731643_16731868 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.72 0.00 0.00 0.00 0.19 0.00 0.43 0.00 0.55 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.43 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.30 0.00 0.00 K alternative_donor Syx16,RI_chrX_20264319_20264376 chrX - chrX_20264319_20264380 chrX_20264319_20264376 chrX_20264219_20264318;chrX_20264381_20264476 1.79 2.17 0.00 1.72 1.92 2.38 1.82 0.00 2.06 0.00 0.00 1.06 0.00 0.00 3.57 14.29 0.00 2.00 0.00 3.12 0.00 2.94 5.71 1.23 2.33 2.13 1.79 1.92 3.30 3.28 1.85 1.54 5.32 1.59 1.79 8.77 1.88 1.54 2.11 2.83 1.27 0.93 0.00 0.00 3.28 2.15 3.39 2.30 1.54 6.41 1.59 0.00 1.72 0.00 0.00 1.37 0.00 2.11 K intron_retention CG12224 chr3R - chr3R_7807273_7807327 chr3R_7807272_7807273;chr3R_7807327_7807328 chr3R_7806734_7807272;chr3R_7807328_7807489 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.96 0.00 0.00 0.00 0.00 0.00 4.48 0.86 0.00 0.00 0.00 1.09 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.75 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.67 0.00 K cassette Cdep,I_chr3R_749200_749265 chr3R + chr3R_749551_751615 chr3R_749551_751267;chr3R_751375_751615 chr3R_751268_751374 chr3R_749476_749550;chr3R_751616_751731 89.25 88.10 96.00 89.25 89.74 91.11 75.56 89.89 89.22 92.59 88.10 89.25 89.47 92.86 87.93 94.74 95.83 92.68 91.67 95.74 92.00 88.64 91.03 93.85 83.33 85.71 86.36 88.46 74.19 93.02 71.05 86.21 85.07 95.35 85.71 78.57 94.12 94.23 86.76 83.87 78.79 88.99 88.37 84.93 81.58 87.72 93.48 83.93 91.09 91.53 94.44 90.70 90.00 88.24 93.33 85.71 97.73 87.10 K cassette Ncc69,I_chr3L_12363433_12363982,I_chr3L_12364701_12364860 chr3L - chr3L_12363433_12364643 chr3L_12363433_12363978;chr3L_12364107_12364643 chr3L_12363979_12364106 chr3L_12363335_12363432;chr3L_12364644_12364700 0.00 0.00 0.00 6.82 0.00 0.00 3.45 0.00 0.00 0.00 5.56 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.19 0.00 0.00 3.28 0.00 4.76 2.94 4.26 0.00 0.00 0.00 0.00 0.00 1.96 0.00 3.12 0.00 0.00 2.56 3.28 2.86 3.03 1.30 0.00 0.00 0.00 4.17 0.00 3.77 1.19 2.44 3.39 3.45 0.00 2.78 2.22 0.00 0.00 2.02 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2813977;chr2R_2814097_2814174;chr2R_2814327_2814894;chr2R_2815657_2816013;chr2R_2816342_2816577;chr2R_2816779_2817459;chr2R_2817604_2817753 chr2R_2813978_2814096;chr2R_2814175_2814326;chr2R_2814895_2815656;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817460_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG8777,RI_chr2R_4989921_4989993,Vang chr2R + chr2R_4989921_4989993 chr2R_4989921_4989980 chr2R_4989821_4989920;chr2R_4989994_4990093 100.00 96.00 100.00 96.67 NA 95.24 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 95.24 96.43 100.00 98.85 100.00 100.00 100.00 95.83 NA NA NA NA NA 100.00 97.44 NA NA 96.15 NA NA 100.00 100.00 96.77 100.00 NA 100.00 NA 96.15 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG12071,RI_chr3R_26705629_26705815,RI_chr3R_26713323_26714382 chr3R - chr3R_26703720_26703868 chr3R_26703719_26703720;chr3R_26703868_26703869 chr3R_26703609_26703719;chr3R_26703869_26703876 88.89 NA NA 86.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.91 88.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG7504 chr3L - chr3L_8130347_8130422 chr3L_8130366_8130422 chr3L_8130423_8130491;chr3L_8130131_8130346 83.06 NA NA 70.00 NA NA 90.00 86.96 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 79.17 NA NA NA NA NA NA NA NA NA K intron_retention CG8451 chr2L - chr2L_8202534_8203086 chr2L_8202533_8202534;chr2L_8203086_8203087 chr2L_8202468_8202533;chr2L_8203087_8203246 3.31 0.00 5.56 1.72 6.25 9.09 10.17 4.41 7.32 0.00 4.76 5.26 0.00 6.45 10.71 6.82 0.00 0.00 3.23 4.35 6.25 0.00 2.53 5.66 0.00 0.00 4.41 0.00 3.70 3.23 2.00 0.00 NA 4.48 0.00 4.26 3.39 0.00 0.00 4.26 NA 1.43 0.00 0.00 NA 5.00 0.00 0.00 7.89 9.68 2.74 5.71 9.52 5.41 2.27 2.13 10.00 0.00 K alternative_donor RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522912_523360;chrX_522912_523215;chrX_522912_523194;chrX_522912_523323;chrX_522912_523389 chrX_522912_523414 chrX_522849_522911;chrX_523415_523436 44.35 50.43 44.35 72.56 51.81 45.74 27.61 65.02 47.53 32.73 52.17 45.67 33.33 42.50 38.20 34.19 38.71 44.74 46.91 53.49 41.82 60.78 16.38 24.56 23.33 21.82 30.28 62.73 33.33 41.76 44.33 66.67 47.83 60.16 38.89 32.29 15.05 20.00 23.40 75.72 45.67 69.67 45.16 68.16 60.85 49.07 29.51 54.33 59.44 27.55 20.62 24.10 52.19 36.28 42.72 34.17 45.78 58.03 K intron_retention CG14767,RI_chr2R_4610372_4610761 chr2R - chr2R_4610958_4611210 chr2R_4610957_4610958;chr2R_4611210_4611211 chr2R_4610762_4610957;chr2R_4611211_4611331 1.09 1.73 1.11 2.07 0.93 0.93 5.99 1.97 1.48 0.00 1.97 1.23 0.00 1.50 1.14 0.98 1.27 1.55 0.45 1.98 0.45 0.80 0.76 0.00 2.03 0.99 2.08 2.95 0.87 0.45 1.70 0.00 1.38 1.74 1.00 0.74 0.00 0.00 0.89 1.23 1.83 2.01 1.18 1.55 1.05 0.00 0.72 0.00 1.63 1.14 0.63 1.29 0.00 0.91 1.09 1.05 1.11 0.00 K cassette Nap1,I_chr2R_19794052_19794730,I_chr2R_19794246_19794473 chr2R - chr2R_19794052_19794730 chr2R_19794052_19794137;chr2R_19794246_19794730 chr2R_19794138_19794245 chr2R_19793952_19794051;chr2R_19794731_19794812 100.00 100.00 100.00 99.85 99.72 100.00 100.00 100.00 99.91 99.70 100.00 99.59 100.00 100.00 100.00 99.80 100.00 100.00 100.00 99.81 100.00 99.42 100.00 100.00 100.00 100.00 100.00 99.59 99.59 100.00 99.77 99.78 99.34 100.00 100.00 99.61 99.89 100.00 99.88 99.84 99.77 99.90 99.68 100.00 99.60 99.84 100.00 99.81 99.78 99.85 100.00 100.00 99.91 100.00 100.00 100.00 100.00 99.78 K alternative_last_exon CG13784,I_chr2L_7209439_7209522,I_chr2L_7219131_7219918 chr2L - chr2L_7208582_7218908;chr2L_7218854_7218908 chr2L_7209654_7218908 chr2L_7208417_7208581;chr2L_7218643_7218853 chr2L_7209349_7209653 chr2L_7218909_7219130 71.43 71.43 58.82 65.00 71.43 57.14 60.87 66.67 53.12 63.16 70.00 75.00 55.56 41.18 66.67 37.50 75.00 66.67 41.18 60.87 72.73 66.67 77.27 70.59 82.35 83.33 85.71 85.71 68.42 78.26 61.54 77.78 84.00 51.72 55.56 88.24 84.62 78.57 79.31 74.19 76.92 67.74 66.67 88.00 81.82 71.43 81.82 72.00 60.71 30.00 76.19 75.00 50.00 70.00 73.33 77.78 71.43 75.00 K alternative_acceptor csw,I_chrX_2002576_2003165 chrX + chrX_2005657_2005736 chrX_2005657_2005720 chrX_2005238_2005656;chrX_2005737_2005899 60.00 NA NA NA NA NA NA 75.00 68.75 NA NA 50.00 NA NA 87.50 NA NA NA NA 40.00 NA 76.92 64.71 58.82 70.00 NA 90.00 NA NA 53.33 NA 55.56 64.71 NA 71.43 90.00 90.00 NA 58.33 56.25 90.91 50.00 NA 60.00 63.64 50.00 NA 56.25 60.00 NA 56.25 NA 50.00 NA NA 55.56 60.00 43.75 K intron_retention coro,I_chr2R_2752880_2760038,I_chr2R_2754447_2754986,I_chr2R_2754447_2755071 chr2R - chr2R_2754447_2760038 chr2R_2754446_2754447;chr2R_2760038_2760039 chr2R_2754347_2754446;chr2R_2760039_2760138 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 1.07 0.00 0.00 0.73 0.00 0.00 2.00 0.00 1.52 0.00 0.00 1.24 0.00 1.23 1.42 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 1.03 1.45 0.00 0.00 0.69 0.00 2.04 0.34 0.00 0.00 1.52 0.00 0.00 0.00 2.70 0.58 1.16 1.61 0.00 1.64 0.00 0.00 1.77 0.00 0.00 1.12 K alternative_acceptor CG7903,I_chr3R_25820462_25820871,I_chr3R_25820814_25820871 chr3R - chr3R_25820456_25820514 chr3R_25820462_25820514 chr3R_25820515_25820800;chr3R_25820362_25820455 90.91 63.64 90.00 90.00 NA NA 80.00 78.57 94.12 90.91 NA 83.33 NA NA 92.86 88.89 90.91 87.50 55.56 94.44 100.00 100.00 95.24 94.12 100.00 85.71 94.12 87.50 82.35 92.31 93.75 90.00 84.21 76.92 93.33 92.31 95.65 100.00 81.82 80.95 92.31 96.30 83.33 91.67 80.95 88.89 77.78 86.67 94.74 87.50 94.12 90.91 94.44 71.43 92.86 100.00 94.44 79.31 K cassette Caki,I_chr3R_17645303_17645375 chr3R - chr3R_17617869_17633320 chr3R_17617869_17629405;chr3R_17630898_17633320 chr3R_17629406_17630897 chr3R_17617683_17617868;chr3R_17633321_17633456 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Hil chr2R - chr2R_16502439_16505571 chr2R_16502478_16505571 chr2R_16505572_16505719;chr2R_16502011_16502438 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 3.57 NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 K intron_retention Nipped-B,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_614591_614662 chr2R_614590_614591;chr2R_614662_614663 chr2R_614353_614590;chr2R_614663_614712 22.22 19.44 15.87 13.58 28.00 18.87 9.79 24.79 22.05 12.50 19.57 15.32 42.11 20.63 29.41 31.03 19.12 22.22 24.62 17.42 15.38 21.28 31.08 34.62 15.56 16.07 21.74 30.43 56.86 15.56 31.37 50.00 51.11 28.15 22.22 9.43 25.00 18.75 29.63 24.56 11.76 21.50 17.39 28.12 NA 21.05 22.22 42.00 24.31 26.09 24.62 24.32 23.53 NA 28.40 NA NA 38.89 K intron_retention CG11306 chr3L + chr3L_21621236_21621292 chr3L_21621235_21621236;chr3L_21621292_21621293 chr3L_21620562_21621235;chr3L_21621293_21621491 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.08 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention C1GalTA,I_chr2L_8945896_8950977 chr2L - chr2L_8944168_8944232 chr2L_8944167_8944168;chr2L_8944232_8944233 chr2L_8943469_8944167;chr2L_8944233_8945122 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.35 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Prp8,I_chr2R_8046315_8046511,I_chr2R_8050245_8050389 chr2R - chr2R_8046289_8046511 chr2R_8046315_8046511 chr2R_8046512_8046611;chr2R_8046215_8046288 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Rpb4 chr3R - chr3R_14080914_14081038;chr3R_14080959_14081038 chr3R_14080814_14081038 chr3R_14081039_14081173;chr3R_14080097_14080813 0.00 0.00 9.09 9.09 0.00 0.00 0.00 11.11 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.00 0.00 0.00 0.00 12.50 0.00 9.09 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 NA 6.25 NA 11.11 11.11 0.00 12.50 0.00 0.00 0.00 13.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA nct,I_chr3R_20679262_20679308 chr3R + chr3R_20679262_20679324;chr3R_20679262_20679308 chr3R_20679262_20679333 chr3R_20679193_20679261;chr3R_20679334_20679393 0.69 1.31 1.09 0.70 0.00 1.42 0.78 0.38 1.30 0.00 1.21 0.98 0.79 0.76 0.00 0.51 0.00 2.94 1.37 1.58 0.00 1.55 0.60 0.99 0.00 0.00 0.35 0.00 1.60 0.57 0.00 0.00 1.47 0.00 0.00 0.72 0.69 1.40 0.33 0.89 1.30 0.65 0.00 0.42 3.38 0.00 1.11 0.00 0.45 0.39 0.31 0.74 0.72 1.33 1.12 0.60 1.36 0.00 K alternative_acceptor Imp,I_chrX_10699490_10700695,RI_chrX_10699665_10700501,RI_chrX_10699665_10700695 chrX - chrX_10699503_10700474 chrX_10699665_10700474 chrX_10700475_10700885;chrX_10699299_10699502 100.00 NA 83.33 100.00 NA NA 100.00 90.91 100.00 NA NA 100.00 100.00 100.00 NA 93.75 NA 100.00 85.71 100.00 NA 100.00 NA NA NA NA NA NA 100.00 85.71 87.50 NA 100.00 100.00 NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA 100.00 90.91 NA NA NA NA NA 100.00 NA NA 100.00 K intron_retention l(3)73Ah chr3L + chr3L_16582273_16582346 chr3L_16582272_16582273;chr3L_16582346_16582347 chr3L_16582120_16582272;chr3L_16582347_16582630 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.98 0.00 2.50 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 2.65 0.00 0.00 0.00 2.90 0.00 0.00 2.04 7.25 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 1.03 0.00 0.00 2.04 0.00 0.00 0.00 1.85 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 K jcn_only_AD CG3635,I_chr2L_22179420_22179486 chr2L + chr2L_22175603_22179486 chr2L_22179420_22179486 chr2L_22179487_22179566;chr2L_22175591_22175602 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA K intron_retention CG31158,CI_chr3R_18432763_18433113,CG31159 chr3R + chr3R_18433031_18433110 chr3R_18433030_18433031;chr3R_18433110_18433111 chr3R_18432919_18433030;chr3R_18433111_18433733 0.00 NA NA 6.67 NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA 4.55 NA NA NA 14.29 NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 5.56 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 0.00 K mutually_exclusive Pvr,I_chr2L_8226604_8228082,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8226604_8228082,chr2L_8228258_8228493 chr2L_8226604_8227669,chr2L_8227827_8228493 chr2L_8228083_8228257 chr2L_8227670_8227826 chr2L_8226504_8226603;chr2L_8228494_8229011 16.67 28.57 14.29 0.00 25.00 20.00 10.00 18.18 13.04 0.00 0.00 10.00 25.00 12.50 12.50 12.50 10.00 NA 25.00 8.33 16.67 NA 37.50 14.29 NA 16.67 42.86 NA NA 20.00 NA NA NA 16.67 NA 0.00 12.50 66.67 33.33 33.33 NA 16.67 NA 16.67 NA 20.00 NA NA 18.18 NA 33.33 20.00 NA NA 14.29 20.00 NA NA K intron_retention CG2246,I_chr3R_26421344_26425985,RI_chr3R_26421349_26425985,I_chr3R_26421349_26427017,noncoding_20201 chr3R - chr3R_26421349_26427138 chr3R_26421348_26421349;chr3R_26427138_26427139 chr3R_26421249_26421348;chr3R_26427139_26427178 15.38 NA 13.33 26.67 NA NA 25.00 25.00 18.18 NA NA 9.52 NA NA 23.08 15.79 NA NA 21.43 19.35 NA 25.00 NA NA 33.33 NA 33.33 NA 26.67 NA NA NA 14.29 36.36 NA 11.76 15.38 NA 11.11 8.70 NA 17.65 NA 10.00 NA 13.64 4.76 9.68 17.24 0.00 4.76 NA 0.00 NA NA 14.29 NA 13.79 K intron_retention CG32267 chr3L - chr3L_3471857_3471926 chr3L_3471856_3471857;chr3L_3471926_3471927 chr3L_3471543_3471856;chr3L_3471927_3472026 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG3294,RI_chr2L_4795584_4795842 chr2L + chr2L_4795572_4795842 chr2L_4795584_4795842 chr2L_4795843_4795942;chr2L_4795484_4795571 2.17 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 4.35 K intron_retention mor chr3R - chr3R_11795125_11795603 chr3R_11795124_11795125;chr3R_11795603_11795604 chr3R_11794297_11795124;chr3R_11795604_11795814 54.12 49.38 61.54 54.12 38.46 21.74 53.12 55.13 57.45 33.96 56.52 50.00 46.43 61.54 40.00 63.83 51.85 55.56 59.52 45.99 50.00 19.35 54.89 55.21 69.23 87.10 41.56 27.16 49.18 44.19 61.11 38.38 36.00 56.00 38.96 83.93 58.89 50.00 59.79 58.56 41.18 56.38 60.98 65.08 24.09 51.35 53.40 26.67 61.33 46.91 51.46 56.60 56.34 65.52 55.77 54.67 57.14 29.06 K jcn_only_AA CG1347 chr3R + chr3R_1503487_1503739 chr3R_1503487_1503735 chr3R_1503387_1503486;chr3R_1503740_1505431 100.00 100.00 96.08 100.00 100.00 100.00 98.08 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 98.61 100.00 99.07 100.00 97.67 97.44 100.00 97.62 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 98.75 100.00 100.00 98.15 NA 99.03 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 95.45 100.00 K alternative_acceptor enc chr3L + chr3L_3832544_3832616 chr3L_3832544_3832601 chr3L_3832451_3832543;chr3L_3832617_3832758 13.16 16.67 9.52 12.90 12.00 16.67 20.37 11.86 12.33 22.22 13.33 11.59 11.43 18.18 11.11 10.53 20.00 13.89 16.67 12.86 10.71 15.69 14.29 15.38 15.38 34.62 8.51 13.16 20.37 15.91 9.52 22.73 15.22 18.87 10.71 12.12 13.11 7.89 8.16 12.50 10.71 11.11 11.11 10.00 12.00 14.29 14.29 15.79 17.14 18.52 20.00 12.50 12.00 4.76 8.06 14.29 17.65 17.65 K intron_retention tho2 chr2L - chr2L_2144626_2144804 chr2L_2144625_2144626;chr2L_2144804_2144805 chr2L_2144457_2144625;chr2L_2144805_2145158 4.55 3.77 5.00 4.35 0.00 0.00 10.81 7.14 3.85 5.00 4.00 3.17 0.00 6.25 0.00 4.44 0.00 0.00 3.12 7.69 6.45 20.37 6.15 4.17 10.34 14.81 8.77 0.00 10.87 5.00 17.78 4.76 5.66 4.41 4.17 25.53 9.80 8.06 5.33 5.56 5.26 2.67 0.00 14.29 0.00 7.41 7.41 4.48 4.55 4.55 4.48 0.00 0.00 0.00 2.08 7.41 0.00 0.00 K cassette Adam,I_chr2R_5856741_5856974,I_chr2R_5856741_5857245,I_chr2R_5857058_5857250,I_chr2R_5857078_5857245 chr2R + chr2R_5856741_5857245 chr2R_5856741_5856965;chr2R_5857058_5857245 chr2R_5856966_5857057 chr2R_5856641_5856740;chr2R_5857246_5857345 99.38 99.44 99.42 99.51 100.00 99.38 99.42 97.16 99.70 98.35 97.81 98.91 98.10 99.22 99.43 98.84 99.02 99.28 100.00 99.55 98.55 98.01 98.32 100.00 100.00 97.66 98.47 99.40 97.83 98.82 98.34 100.00 100.00 100.00 98.28 99.44 98.83 100.00 100.00 99.16 98.18 99.70 99.13 100.00 99.59 99.65 99.60 99.48 98.60 100.00 98.21 99.30 99.62 98.34 98.89 99.15 100.00 100.00 K alternative_acceptor CG2926,I_chr3R_1410841_1410893 chr3R - chr3R_1405758_1405836 chr3R_1405768_1405836 chr3R_1405837_1406027;chr3R_1405390_1405757 98.55 94.44 100.00 97.56 100.00 93.33 97.06 97.14 100.00 95.65 100.00 100.00 95.83 100.00 93.75 100.00 100.00 89.47 100.00 97.78 92.31 94.74 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 97.14 97.56 95.24 100.00 95.00 93.33 100.00 98.04 94.87 100.00 100.00 100.00 97.44 98.00 100.00 98.55 97.22 95.24 100.00 100.00 92.86 94.74 96.30 100.00 95.45 100.00 K alternative_acceptor CG15881,RI_chr3L_19799338_19799394,RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19799338_19799405 chr3L_19799338_19799394 chr3L_19799238_19799337;chr3L_19799406_19799494 2.82 0.00 0.00 11.11 NA NA 5.56 0.00 5.00 NA 0.00 0.00 NA NA NA 7.14 NA 5.00 0.00 5.41 5.88 11.54 NA 0.00 NA NA 9.52 NA NA 0.00 4.76 5.88 0.00 0.00 0.00 NA 4.17 0.00 4.55 2.08 NA 0.00 NA 3.85 7.14 2.70 2.94 0.00 3.33 6.25 3.85 0.00 0.00 0.00 5.56 3.03 1.96 0.00 K intron_retention CG7956 chr3R + chr3R_17351141_17351248 chr3R_17351140_17351141;chr3R_17351248_17351249 chr3R_17351077_17351140;chr3R_17351249_17351485 7.14 NA NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA NA NA NA K cassette mub,RI_chr3L_21901021_21901163,I_chr3L_21908756_21909179 chr3L + chr3L_21873042_21900445 chr3L_21873042_21881733;chr3L_21881793_21900445 chr3L_21881734_21881792 chr3L_21872950_21873041;chr3L_21900446_21901020 5.66 4.55 0.00 14.81 4.76 5.56 6.52 5.66 7.25 0.00 23.53 7.55 4.55 6.45 10.71 4.76 3.85 4.00 NA 8.57 18.18 5.88 8.33 8.00 NA 3.85 11.54 NA 7.14 7.41 6.25 NA 0.00 8.06 4.76 6.67 4.17 6.67 5.26 4.65 NA 6.12 4.35 2.70 NA 4.76 NA 4.35 3.64 6.67 2.78 5.26 NA NA 10.81 NA 6.67 5.56 K intron_retention Cap-G chr2R + chr2R_9021065_9021134 chr2R_9021064_9021065;chr2R_9021134_9021135 chr2R_9020664_9021064;chr2R_9021135_9021311 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 K intron_retention loco,I_chr3R_18448629_18449211,I_chr3R_18456329_18462522 chr3R - chr3R_18448629_18455274 chr3R_18448628_18448629;chr3R_18455274_18455275 chr3R_18448529_18448628;chr3R_18455275_18456255 14.29 NA NA NA NA NA NA NA 18.75 NA NA NA NA NA NA NA NA NA NA 28.57 NA 11.36 14.29 0.00 NA NA 14.29 16.67 NA 6.67 NA NA 14.29 30.77 14.29 NA 10.53 NA 10.53 NA NA 18.75 NA NA NA NA 50.00 NA NA 23.81 11.76 NA NA NA NA NA NA NA N alternative_donor Fpps chr2R - chr2R_7194465_7194765 chr2R_7194465_7194535 chr2R_7194370_7194464;chr2R_7194766_7195007 1.82 2.13 1.79 1.28 0.00 0.00 1.49 3.12 0.83 0.00 0.00 4.29 2.94 2.27 0.00 2.33 2.13 26.09 1.82 1.25 1.96 3.12 0.00 1.82 4.17 1.67 1.92 0.00 2.38 0.00 5.26 3.23 0.00 2.02 3.85 0.00 0.00 2.27 1.82 1.67 5.56 0.98 1.92 0.00 0.00 2.70 0.00 2.94 1.25 0.00 2.78 2.56 4.76 0.00 1.54 2.56 4.00 0.00 K intron_retention mrt,I_chr3R_23105765_23106979,I_chr3R_23105765_23108338 chr3R - chr3R_23105765_23107474 chr3R_23105764_23105765;chr3R_23107474_23107475 chr3R_23105665_23105764;chr3R_23107475_23107541 16.32 NA 18.75 NA NA 14.29 33.33 NA 25.93 NA NA 15.00 14.29 NA NA 10.53 NA NA 20.00 26.09 NA 10.53 NA 25.00 NA 14.29 NA NA NA NA 11.11 NA NA 12.50 NA NA 0.00 NA 14.29 23.08 NA 24.00 NA NA NA NA NA NA 10.00 NA 36.36 20.00 NA NA 17.65 NA NA NA K intron_retention GstS1,I_chr2R_12981955_12982033,I_chr2R_12981964_12982021 chr2R - chr2R_12981964_12982033 chr2R_12981963_12981964;chr2R_12982033_12982034 chr2R_12981864_12981963;chr2R_12982034_12982121 0.00 0.00 NA 10.00 NA NA 6.25 NA 7.41 0.00 0.00 4.76 NA NA 0.00 0.00 NA NA 0.00 6.67 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 7.14 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 5.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 5.56 K alternative_donor plexA,RI_chr4_1036247_1047588,RI_chr4_1040642_1047395,RI_chr4_1044307_1046841,RF_chr4_1044307_1047399 chr4 - chr4_1044307_1047588;chr4_1044307_1047399 chr4_1044307_1047395 chr4_1044207_1044306;chr4_1047589_1047625 38.46 50.00 33.33 26.67 NA 14.29 40.00 34.62 37.93 NA NA 29.63 46.67 35.71 NA 26.83 40.00 NA 38.46 41.18 NA 12.50 41.67 NA 60.00 NA 50.00 NA 25.00 40.00 28.57 NA NA 64.71 60.00 30.00 NA NA NA 37.50 NA 53.33 42.86 30.77 NA NA NA 20.00 45.00 NA 30.77 66.67 NA NA 66.67 NA NA NA K alternative_donor lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22817556_22817713;chr2L_22817653_22817713 chr2L_22817658_22817713 chr2L_22817714_22817839;chr2L_22817553_22817555 100.00 100.00 100.00 100.00 100.00 100.00 95.83 96.15 95.83 100.00 100.00 100.00 94.12 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 96.00 100.00 100.00 NA 100.00 100.00 91.67 100.00 87.50 100.00 100.00 100.00 NA 94.44 100.00 100.00 91.67 K alternative_acceptor l(2)03709,I_chr2R_14707617_14707700,I_chr2R_14708048_14708095 chr2R + chr2R_14707030_14707128 chr2R_14707030_14707125 chr2R_14707024_14707029;chr2R_14707129_14707270 98.04 100.00 98.21 100.00 97.87 97.50 100.00 97.14 96.77 96.55 96.23 98.88 100.00 94.12 97.10 97.73 100.00 97.83 98.04 98.68 97.96 100.00 100.00 100.00 100.00 98.04 100.00 95.83 97.67 100.00 98.67 93.33 96.97 98.55 100.00 100.00 93.10 100.00 94.74 91.49 96.43 96.67 97.73 100.00 98.44 96.88 100.00 97.44 95.73 100.00 96.00 96.00 100.00 100.00 98.53 100.00 95.24 97.83 K jcn_only_AD CG5484 chr3R + chr3R_22543722_22544049;chr3R_22543749_22544049 chr3R_22543734_22544049 chr3R_22544050_22544588;chr3R_22543570_22543721 1.61 1.61 0.00 0.00 1.10 2.53 0.00 0.64 0.93 2.99 0.80 1.42 1.04 1.47 0.84 3.03 1.06 0.00 1.15 0.53 2.47 1.30 1.42 2.42 3.90 2.60 2.67 2.94 1.23 1.25 1.20 1.96 0.00 1.46 1.61 2.63 2.93 3.31 0.00 2.65 2.86 0.56 1.27 1.77 3.90 5.33 2.65 0.00 2.00 3.23 3.54 1.08 2.17 1.64 3.41 1.63 1.64 3.70 K intron_retention R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083637_8089393 chr2L_8083636_8083637;chr2L_8089393_8089394 chr2L_8083592_8083636;chr2L_8089394_8089493 78.95 70.00 81.82 71.43 NA NA 75.00 85.00 82.14 NA NA 79.17 66.67 69.23 77.78 75.00 100.00 66.67 93.33 76.47 NA 90.91 81.25 63.64 92.31 90.00 76.92 100.00 93.33 80.00 71.43 NA 80.95 89.47 NA 92.31 NA NA NA 70.83 90.91 76.47 81.82 75.00 NA 50.00 NA 94.74 78.95 NA 75.00 87.50 NA NA 66.67 77.78 NA 75.00 N intron_retention CG32529 chrX + chrX_19781526_19794648 chrX_19781525_19781526;chrX_19794648_19794649 chrX_19781512_19781525;chrX_19794649_19795521 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA 18.52 NA NA NA NA 100.00 NA NA NA 100.00 NA 28.57 100.00 100.00 NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA 60.00 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K jcn_only_AD ND42,RI_chr3R_17861471_17861539 chr3R + chr3R_17854871_17854937 chr3R_17854875_17854937 chr3R_17854938_17855115;chr3R_17853742_17854870 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.18 0.29 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG33170,RI_chr3L_22859073_22860499,I_chr3L_22859135_22860499 chr3L + chr3L_22859061_22860499 chr3L_22859060_22859061;chr3L_22860499_22860500 chr3L_22859035_22859060;chr3L_22860500_22860559 21.13 21.43 14.75 22.76 17.14 15.15 30.59 21.55 20.61 26.32 28.21 24.00 50.00 22.86 17.72 22.06 16.95 17.31 21.74 23.02 21.43 20.00 18.07 21.05 21.95 19.30 32.35 27.27 21.13 18.31 21.92 16.30 21.98 23.01 28.33 33.33 22.03 23.26 23.08 19.32 14.60 15.71 18.52 16.52 14.06 16.47 27.06 18.18 17.29 21.35 26.09 19.72 19.40 23.53 13.25 20.54 17.31 10.29 K alternative_donor ctp,I_chrX_4582351_4582483,I_chrX_4582382_4585669,I_chrX_4582627_4585669,RI_chrX_4582706_4585629,RI_chrX_4582706_4592329 chrX + chrX_4582706_4585669;chrX_4582351_4585669 chrX_4582325_4585669 chrX_4585670_4585729;chrX_4582282_4582324 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 K alternative_donor CG42348,I_chr3L_20147245_20147306,I_chr3L_20149990_20151579 chr3L - chr3L_20147245_20147306 chr3L_20147245_20147303 chr3L_20147177_20147244;chr3L_20147307_20147366 98.73 100.00 97.96 98.73 100.00 96.55 98.39 98.78 97.64 98.21 96.08 98.32 97.06 100.00 98.25 100.00 97.50 98.18 100.00 99.30 97.83 98.97 98.59 98.57 100.00 100.00 96.88 100.00 98.80 100.00 96.77 99.02 99.25 99.01 97.06 100.00 99.06 98.51 99.12 98.10 99.21 99.15 97.62 98.75 98.14 97.16 98.25 98.73 99.04 98.39 98.59 100.00 100.00 98.18 98.61 100.00 98.39 98.75 K intron_retention HLH106,RI_chr3L_19787260_19787323,mir-33 chr3L + chr3L_19791007_19791232 chr3L_19791006_19791007;chr3L_19791232_19791233 chr3L_19790880_19791006;chr3L_19791233_19791400 0.85 0.75 0.85 0.78 1.19 1.05 1.23 1.31 0.98 0.00 0.34 1.28 1.25 1.48 1.15 0.79 1.78 1.36 1.12 0.70 0.95 0.80 0.47 0.65 0.98 1.11 0.79 2.86 0.17 0.38 0.92 0.46 0.13 1.10 0.42 0.89 0.77 1.16 0.52 0.75 1.04 1.22 1.64 0.59 0.72 0.72 0.63 0.65 1.37 0.95 0.57 1.16 1.06 0.76 0.84 1.28 0.62 0.33 K cassette sw chrX - chrX_20101671_20105848;chrX_20103239_20105848 chrX_20103239_20104496,chrX_20101671_20104496;chrX_20104518_20105848 chrX_20104497_20104517 chrX_20101515_20101670;chrX_20105849_20105976 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 NA 100.00 100.00 NA 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 90.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 NA 100.00 95.24 NA 100.00 100.00 90.91 100.00 100.00 100.00 NA 94.12 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 NA K alternative_donor CaMKI,I_chr4_466377_467256,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,RI_chr4_467374_467424,RI_chr4_467482_467543,I_chr4_467862_471815,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_466592_467726;chr4_466275_467726;chr4_467662_467726;chr4_466798_467726;chr4_467273_467726 chr4_466377_467726 chr4_467727_467826;chr4_466269_466274 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 K jcn_only_AA Rm62,I_chr3R_1828444_1829394,I_chr3R_1828476_1829394 chr3R - chr3R_1827459_1829394 chr3R_1828821_1829394 chr3R_1829395_1829494 1.09 0.81 1.23 1.22 1.08 0.68 0.27 0.65 1.15 1.93 1.81 1.21 0.72 1.34 0.99 2.10 1.06 1.08 0.78 0.88 1.47 0.00 1.09 1.75 1.00 1.17 1.07 1.72 0.96 1.04 3.98 0.48 2.51 0.66 1.37 3.07 0.86 0.81 1.12 0.90 1.73 0.65 1.12 1.32 1.45 1.05 0.64 2.35 1.15 0.97 0.98 1.35 2.33 1.27 0.51 1.12 0.61 1.87 K intron_retention CG9663,I_chr2L_3296691_3296743 chr2L - chr2L_3296995_3297052 chr2L_3296994_3296995;chr2L_3297052_3297053 chr2L_3296756_3296994;chr2L_3297053_3297388 3.36 0.00 0.00 6.06 NA 0.00 2.50 7.14 9.76 5.26 0.00 6.25 NA 0.00 0.00 13.89 NA 5.56 10.71 3.77 0.00 0.00 1.37 3.64 5.77 0.00 4.12 3.42 1.32 3.28 3.85 2.00 2.74 10.34 5.71 0.00 1.15 0.00 0.00 2.27 4.94 4.55 13.33 2.35 6.45 6.25 2.86 3.30 3.23 6.15 3.08 2.70 10.53 4.35 0.00 11.11 5.00 9.09 K intron_retention CG2765,RI_chr2R_20849027_20852094,I_chr2R_20849271_20849626,I_chr2R_20849271_20850005,E_chr2R_20849271_20850693,E_chr2R_20849271_20851166,E_chr2R_20849271_20852090,E_chr2R_20851190_20852094 chr2R - chr2R_20849027_20852094 chr2R_20849026_20849027;chr2R_20852094_20852095 chr2R_20848927_20849026;chr2R_20852095_20852190 90.91 96.00 92.31 64.00 100.00 97.14 73.68 79.17 94.92 100.00 82.35 88.14 94.44 100.00 95.65 93.94 96.55 94.12 93.55 92.45 91.30 67.44 91.43 90.48 92.86 96.88 90.24 90.91 82.50 73.91 91.67 NA 88.89 97.83 96.67 77.27 75.00 88.00 84.62 90.00 82.35 95.00 87.50 84.00 NA 82.35 72.73 81.48 86.84 92.31 84.21 93.75 NA 63.64 96.88 77.78 NA 100.00 K intron_retention CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25317961_25318117 chr3R_25317960_25317961;chr3R_25318117_25318118 chr3R_25317893_25317960;chr3R_25318118_25318457 1.45 1.05 1.83 3.17 1.41 1.85 1.68 3.45 1.53 1.88 0.00 2.80 2.78 0.00 1.61 0.00 0.00 3.81 0.00 2.10 1.83 4.26 1.31 1.30 1.49 0.00 2.90 3.47 1.94 1.29 0.00 1.93 3.02 1.38 2.31 3.61 1.03 1.29 1.42 1.22 2.82 0.65 0.00 0.57 2.31 0.90 1.23 1.44 1.00 1.83 2.46 1.82 0.55 1.02 0.00 1.45 0.43 3.64 K intron_retention dpa,CG12736 chr2R - chr2R_3384915_3384983 chr2R_3384914_3384915;chr2R_3384983_3384984 chr2R_3384462_3384914;chr2R_3384984_3385350 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.79 0.00 1.75 0.00 0.00 0.00 0.00 1.74 4.26 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.89 0.00 1.09 0.00 0.00 K intron_retention mGluRA,I_chr4_959744_963392 chr4 + chr4_963647_963728 chr4_963646_963647;chr4_963728_963729 chr4_963584_963646;chr4_963729_963835 88.89 NA NA 100.00 NA NA NA 88.89 77.78 NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA K alternative_donor RpL31,CG1827 chr2R + chr2R_5474844_5474951;chr2R_5474734_5474951 chr2R_5474789_5474951 chr2R_5474952_5475211;chr2R_5474727_5474733 0.86 1.09 0.98 0.35 0.49 1.16 3.25 1.04 1.38 0.59 1.84 1.05 1.92 3.61 0.32 1.30 0.83 1.23 0.65 0.72 1.32 0.34 1.33 0.69 0.00 0.69 6.45 1.45 0.56 0.99 0.73 0.90 0.16 0.45 0.86 2.75 0.80 0.93 0.59 0.31 0.82 0.38 0.56 1.55 0.34 1.18 1.60 0.30 0.71 0.55 1.67 1.60 0.60 4.88 0.25 1.60 1.59 0.24 K jcn_only_AA Pect,I_chr2L_13207997_13208109,E_chr2L_13208285_13210076 chr2L + chr2L_13208778_13209435;chr2L_13208778_13209492;chr2L_13208778_13209501 chr2L_13208778_13209471 chr2L_13208665_13208777;chr2L_13209502_13209599 73.55 77.46 78.05 52.00 65.00 73.65 86.57 74.41 72.09 75.93 84.00 70.75 22.62 72.21 72.25 77.84 65.16 79.94 72.35 72.69 77.82 64.17 72.97 70.52 68.14 72.53 74.82 61.74 67.47 68.88 72.26 72.57 66.67 77.57 67.25 86.07 75.66 73.66 77.50 77.64 68.90 75.29 73.19 72.95 75.74 73.55 73.85 73.81 76.71 69.68 67.83 71.29 85.02 75.47 74.87 73.85 80.07 78.60 K intron_retention CG1815,I_chr3R_27501104_27501176 chr3R + chr3R_27495663_27496485 chr3R_27495662_27495663;chr3R_27496485_27496486 chr3R_27495539_27495662;chr3R_27496486_27497517 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 2.94 0.00 0.00 0.00 0.00 9.09 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 7.14 K jcn_only_AD CG2003 chr3R + chr3R_27812850_27814973;chr3R_27812907_27814973 chr3R_27812832_27814973 chr3R_27814974_27815051;chr3R_27812763_27812831 3.88 4.00 5.77 0.00 8.00 6.67 3.33 4.35 2.70 NA 0.00 3.26 3.37 5.36 1.79 2.70 2.27 5.45 3.39 7.14 5.56 NA 0.00 2.44 9.09 2.17 6.67 NA NA 8.33 3.90 8.00 18.18 5.66 2.13 3.85 3.85 0.00 0.00 3.70 13.95 4.67 4.55 2.50 3.45 5.08 4.35 9.76 3.47 3.03 3.85 4.55 0.00 NA 6.15 0.00 4.55 4.35 K alternative_donor wech,I_chr2R_3373673_3377000,I_chr2R_3373673_3377045,I_chr2R_3373673_3377324,I_chr2R_3376705_3376837 chr2R - chr2R_3373673_3377324 chr2R_3373673_3376837 chr2R_3373573_3373672;chr2R_3377325_3377372 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 87.50 94.44 100.00 100.00 91.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Chd1,CE_chr2L_2986798_2987386,I_chr2L_2986815_2987511 chr2L - chr2L_2986151_2987511 chr2L_2986815_2987511 chr2L_2987512_2987611 1.52 1.64 1.52 0.99 4.55 4.76 0.00 2.75 2.29 0.00 2.38 4.27 3.17 0.00 0.00 1.04 3.45 0.00 4.55 16.67 0.00 6.12 0.00 3.39 1.33 0.00 1.75 2.22 4.17 1.89 2.63 3.03 0.00 1.03 1.72 0.00 0.00 0.00 0.00 5.00 0.00 1.53 1.79 0.00 0.00 2.08 0.00 2.35 2.29 0.00 1.15 2.78 0.00 0.00 1.23 2.86 0.00 0.00 N multi_cassette Neu3,F_chr3R_10498229_10498337 chr3R - chr3R_10496565_10498144 chr3R_10496565_10497093;chr3R_10497246_10497330;chr3R_10497526_10498144 chr3R_10497094_10497245;chr3R_10497331_10497525 chr3R_10496222_10496564;chr3R_10498145_10498228 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 76.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention RpS3A,I_chr4_87364_87465,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87549_87717 chr4_87548_87549;chr4_87717_87718 chr4_87466_87548;chr4_87718_87817 99.99 99.97 99.97 100.00 100.00 99.97 100.00 100.00 99.99 99.93 100.00 100.00 100.00 100.00 100.00 99.98 100.00 99.96 99.98 99.99 100.00 99.96 99.97 99.94 99.96 99.98 100.00 99.96 99.96 99.94 99.94 100.00 100.00 100.00 99.96 100.00 99.95 99.90 100.00 99.98 100.00 100.00 100.00 100.00 100.00 99.98 100.00 99.96 99.99 99.90 99.94 100.00 99.96 100.00 99.98 100.00 100.00 99.97 K jcn_only_AA CG1707,I_chr2R_3281467_3281526 chr2R - chr2R_3283217_3283299 chr2R_3283232_3283299 chr2R_3283300_3283367;chr2R_3283154_3283216 100.00 100.00 99.63 100.00 98.91 100.00 100.00 99.73 100.00 99.47 100.00 99.24 100.00 100.00 99.33 99.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.65 100.00 99.09 99.53 100.00 100.00 99.69 100.00 100.00 99.53 99.62 99.64 99.72 99.86 100.00 100.00 100.00 99.44 99.80 99.83 100.00 100.00 99.70 100.00 100.00 100.00 100.00 99.67 100.00 99.73 100.00 99.90 K intron_retention TepII,I_chr2L_7696207_7698724,I_chr2L_7696808_7697006,I_chr2L_7697158_7697976,I_chr2L_7697582_7697976 chr2L - chr2L_7696207_7698373 chr2L_7696206_7696207;chr2L_7698373_7698374 chr2L_7696107_7696206;chr2L_7698374_7698442 23.61 NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA 5.26 NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG14749 chr2R + chr2R_4517048_4517115 chr2R_4517048_4517112 chr2R_4515382_4517047;chr2R_4517116_4517691 100.00 100.00 100.00 90.00 100.00 NA 100.00 100.00 92.86 NA 100.00 93.33 87.50 100.00 100.00 100.00 87.50 88.89 100.00 100.00 87.50 100.00 100.00 94.12 NA 100.00 90.91 100.00 87.50 NA NA NA NA 100.00 NA 100.00 92.86 100.00 100.00 94.12 100.00 93.75 NA 90.91 100.00 100.00 93.75 100.00 93.75 95.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K intron_retention Rgk1,I_chr2R_15202259_15205046,I_chr2R_15202844_15203955,I_chr2R_15204004_15205046,F_chr2R_15206006_15206189 chr2R - chr2R_15202259_15202751 chr2R_15202258_15202259;chr2R_15202751_15202752 chr2R_15202245_15202258;chr2R_15202752_15202843 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 10.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA 0.00 0.00 NA 3.45 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 K jcn_only_AA CG17737,I_chr3L_3223527_3224313,I_chr3L_3223943_3224313 chr3L + chr3L_3223415_3223474 chr3L_3223415_3223462 chr3L_3223400_3223414;chr3L_3223475_3223526 5.00 NA NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA 13.64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention Fmo-2 chr2R - chr2R_2532410_2532470 chr2R_2532409_2532410;chr2R_2532470_2532471 chr2R_2532247_2532409;chr2R_2532471_2532663 0.00 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 NA 7.69 NA NA 0.00 NA NA 5.88 6.25 0.00 NA 0.00 0.00 14.29 NA 5.56 3.45 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.70 0.00 0.00 0.00 0.00 4.76 0.00 NA 0.00 0.00 0.00 0.00 0.00 6.67 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Ptpmeg,I_chr3L_353688_353782,I_chr3L_355125_355175 chr3L + chr3L_353688_353782 chr3L_353688_353760 chr3L_353588_353687;chr3L_353783_353882 100.00 97.14 96.30 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 94.12 100.00 97.37 91.89 100.00 100.00 100.00 100.00 97.37 100.00 100.00 98.57 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 96.55 100.00 100.00 100.00 97.73 K cassette msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2579521_2586402 chr3L_2579521_2585604;chr3L_2585716_2586402 chr3L_2585605_2585715 chr3L_2579455_2579520;chr3L_2586403_2586502 97.35 96.38 98.05 94.55 98.56 97.78 98.37 95.51 98.31 96.92 99.31 97.20 97.90 97.35 95.81 97.45 98.52 95.07 95.45 95.33 97.52 93.65 96.92 98.68 99.17 99.19 98.31 94.03 93.67 98.36 93.79 100.00 92.13 98.26 97.14 98.99 98.67 98.69 97.06 97.80 81.08 95.83 96.64 100.00 97.67 92.73 97.30 95.77 95.24 98.08 95.79 99.15 100.00 95.00 94.83 98.39 100.00 94.12 K intron_retention mew,I_chrX_13133259_13150649 chrX - chrX_13114180_13119016 chrX_13114179_13114180;chrX_13119016_13119017 chrX_13114094_13114179;chrX_13119017_13119144 0.00 2.56 1.41 0.00 0.00 1.82 7.69 5.00 2.73 0.00 4.08 0.00 0.00 0.00 1.32 3.23 0.00 0.00 0.00 3.64 4.88 0.00 3.92 0.00 0.00 2.78 0.00 NA 0.00 5.71 4.35 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 2.35 4.08 0.00 0.00 0.00 0.00 0.00 4.04 0.00 0.00 3.23 0.00 0.00 1.45 3.85 NA 3.12 K mutually_exclusive ens,I_chr3L_4130719_4131120 chr3L - chr3L_4127163_4128613,chr3L_4128974_4131120;chr3L_4127163_4129650,chr3L_4129792_4131120 chr3L_4127163_4130388,chr3L_4130644_4131120 chr3L_4128614_4128973;chr3L_4129651_4129791 chr3L_4130389_4130643 chr3L_4126989_4127162;chr3L_4131121_4131220 0.72 0.97 1.11 0.72 0.00 0.00 1.04 0.77 0.55 0.00 1.19 0.67 0.00 1.23 1.08 1.64 1.15 0.00 0.00 0.63 1.39 0.65 0.64 0.81 1.02 0.00 0.83 0.00 0.00 0.87 0.88 1.64 0.75 1.37 0.98 1.60 0.56 0.79 0.00 0.52 0.00 0.51 1.39 0.74 0.00 1.15 0.00 0.69 0.70 0.00 0.65 1.05 0.00 0.00 0.99 1.20 0.00 1.33 K intron_retention Ser,I_chr3R_23013597_23017227 chr3R - chr3R_23013597_23014068 chr3R_23013596_23013597;chr3R_23014068_23014069 chr3R_23013497_23013596;chr3R_23014069_23014170 0.00 0.00 0.00 11.11 NA NA 0.00 0.00 4.00 NA NA 5.26 NA NA 0.00 15.38 0.00 NA NA 2.56 NA 0.00 0.00 0.00 0.00 NA 3.33 NA NA 4.76 NA NA NA 4.88 4.35 0.00 0.00 0.00 0.00 4.00 NA 3.23 NA 6.67 NA 0.00 9.09 NA 4.00 NA 0.00 12.50 17.65 NA 0.00 NA NA NA K alternative_donor cals,I_chr4_1136706_1136765,I_chr4_1136706_1138476,I_chr4_1139644_1142084,RI_chr4_1141233_1142084 chr4 - chr4_1136706_1136951 chr4_1136706_1136765 chr4_1136606_1136705;chr4_1136952_1137051 0.00 0.00 0.00 0.00 5.00 0.00 1.25 1.06 1.89 0.00 0.00 1.72 0.00 2.38 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 7.14 NA 2.86 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention MED6,CG9471,CG12946,I_chr3R_5599701_5600032,I_chr3R_5609682_5609889 chr3R - chr3R_5593601_5593698 chr3R_5593600_5593601;chr3R_5593698_5593699 chr3R_5593583_5593600;chr3R_5593699_5593832 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 93.75 100.00 100.00 100.00 100.00 100.00 94.44 100.00 96.43 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 97.22 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG3632,RI_chrX_16195880_16196242 chrX + chrX_16190917_16191693 chrX_16190917_16191682 chrX_16190893_16190916;chrX_16191694_16191751 20.00 NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD I_chr3L_834336_834491,Gr61a chr3L + chr3L_842355_842410 chr3L_842359_842410 chr3L_842411_842577;chr3L_842164_842354 63.07 65.00 NA NA NA NA NA 63.64 66.67 NA NA NA NA NA NA NA NA NA NA 59.26 NA NA NA NA NA NA NA NA NA NA 80.00 NA 68.00 NA NA NA 72.41 42.86 80.00 60.71 NA 58.62 NA NA NA NA NA NA NA 72.00 58.33 NA NA NA NA 40.00 62.50 58.33 K intron_retention CG31352,I_chr3R_5521360_5522321 chr3R - chr3R_5520946_5521003 chr3R_5520945_5520946;chr3R_5521003_5521004 chr3R_5520655_5520945;chr3R_5521004_5521168 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA RpL22,noncoding_21234,snoRNA:Psi18S-531,snoRNA:Psi28S-2179 chrX - chrX_657019_658334;chrX_657022_658334 chrX_657025_658334 chrX_658335_658556;chrX_656593_657018 99.98 100.00 100.00 99.98 100.00 100.00 100.00 100.00 99.95 100.00 99.96 100.00 99.97 100.00 99.97 99.98 100.00 99.97 100.00 100.00 99.96 99.97 100.00 100.00 99.96 99.97 100.00 99.91 99.97 99.96 100.00 100.00 100.00 99.98 100.00 100.00 99.98 100.00 100.00 99.97 99.97 99.97 99.96 99.98 99.93 100.00 100.00 99.94 100.00 99.92 100.00 99.96 99.93 100.00 99.98 99.98 99.97 99.99 K mutually_exclusive Tm1,I_chr3R_11120969_11125831,I_chr3R_11121267_11122312,I_chr3R_11121267_11124998,RI_chr3R_11125070_11125831,I_chr3R_11125070_11126469 chr3R + chr3R_11120969_11122312,chr3R_11122431_11125831 chr3R_11120969_11121148,chr3R_11121267_11125831 chr3R_11122313_11122430 chr3R_11121149_11121266 chr3R_11120869_11120968;chr3R_11125832_11125902 86.67 89.09 89.91 85.38 93.90 89.66 87.26 83.78 87.10 89.06 84.00 84.48 95.06 83.67 85.45 90.45 86.73 87.00 85.96 89.23 91.30 85.85 88.75 83.22 86.30 85.29 80.16 82.69 80.65 74.58 87.96 88.41 89.10 89.95 87.67 77.01 87.74 86.24 82.08 87.92 82.52 87.79 89.29 90.62 84.62 84.55 86.67 94.29 82.84 77.69 90.44 83.16 84.21 89.29 91.55 83.52 68.21 84.68 K jcn_only_AD CG1970,RI_chr4_589928_590587,I_chr4_590970_591030 chr4 - chr4_589928_590600 chr4_589928_590587 chr4_589828_589927;chr4_590601_590687 0.00 0.00 0.00 0.85 0.78 0.00 0.41 0.27 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 1.27 0.00 0.00 1.68 0.61 0.00 0.00 0.00 0.00 0.66 0.92 0.00 0.00 0.00 0.79 0.00 0.00 0.00 1.18 0.00 0.00 1.33 0.00 0.58 1.02 0.82 0.00 0.00 0.65 0.00 0.89 0.71 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.47 K intron_retention Rcd6,I_chr2R_16518342_16520460,I_chr2R_16518620_16518916,RI_chr2R_16520388_16520855 chr2R - chr2R_16518620_16520294 chr2R_16518619_16518620;chr2R_16520294_16520295 chr2R_16518520_16518619;chr2R_16520295_16520328 16.66 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG42348,I_chr3L_20149990_20151579 chr3L - chr3L_20144991_20146263 chr3L_20144991_20145300;chr3L_20145406_20146263 chr3L_20145301_20145405 chr3L_20144003_20144990;chr3L_20146264_20146435 17.14 17.65 14.29 11.76 NA 16.67 NA 14.29 15.38 15.38 NA 39.13 NA NA NA NA 14.29 NA NA 14.29 NA 38.46 11.54 12.50 14.29 NA 4.76 NA NA 33.33 NA 20.00 22.22 14.29 17.65 33.33 17.14 25.00 19.23 21.43 6.25 18.18 18.18 30.77 17.39 14.71 13.64 25.00 16.00 16.67 16.67 15.38 18.42 26.32 25.00 26.67 9.30 24.14 K jcn_only_AD ps,I_chr3R_5243723_5265067,I_chr3R_5243723_5270765,noncoding_15575,I_chr3R_5245770_5265067,I_chr3R_5245770_5269732,I_chr3R_5269733_5270765 chr3R + chr3R_5243723_5257750 chr3R_5245770_5257750 chr3R_5257751_5258205;chr3R_5243705_5243722 88.89 90.91 90.14 87.36 84.13 84.75 89.58 83.77 85.12 54.55 97.26 88.51 77.78 84.95 89.53 91.30 89.77 83.95 86.17 82.85 88.89 85.71 93.97 86.57 93.59 85.37 97.00 95.74 90.62 89.90 87.32 NA 77.22 85.71 95.24 96.55 92.48 84.78 91.55 95.52 NA 85.81 84.42 90.83 NA 96.88 91.38 85.19 84.97 97.50 95.79 84.44 89.29 82.14 83.70 96.77 100.00 NA N intron_retention CG2681,I_chrX_2609471_2609546,RI_chrX_2622435_2622577 chrX + chrX_2604274_2604352 chrX_2604273_2604274;chrX_2604352_2604353 chrX_2604142_2604273;chrX_2604353_2604934 44.50 100.00 17.65 12.82 38.46 40.00 50.00 54.55 42.11 NA NA 44.00 40.00 45.00 37.50 52.63 52.94 42.11 33.33 43.90 NA 38.89 100.00 36.36 100.00 NA 100.00 NA 100.00 NA 48.00 100.00 28.57 34.62 NA 61.11 39.39 47.06 55.56 48.15 NA 35.48 NA 39.13 36.84 40.91 46.15 47.06 34.48 51.85 57.14 56.25 38.89 55.00 35.71 100.00 47.83 43.75 K intron_retention Pp2A-29B,I_chr2L_8366082_8366148,I_chr2L_8367210_8367311,I_chr2L_8369561_8369715 chr2L + chr2L_8366124_8366192 chr2L_8366123_8366124;chr2L_8366192_8366193 chr2L_8366118_8366123;chr2L_8366193_8366248 98.70 99.24 99.52 99.37 98.33 97.99 97.97 98.88 98.87 96.63 96.71 98.79 99.52 98.05 98.16 98.47 100.00 98.67 97.96 97.95 99.40 97.78 98.96 96.77 97.12 99.50 98.33 96.83 100.00 99.35 99.63 97.83 98.43 98.31 99.07 100.00 96.30 97.53 98.94 95.67 99.20 98.78 99.40 97.53 99.15 99.43 96.52 99.47 98.94 99.13 99.41 98.29 98.11 98.70 97.32 99.01 99.15 97.78 K intron_retention I_chrX_13751182_13777268,mamo,C_chrX_13795677_13808662 chrX - chrX_13764437_13764502 chrX_13764436_13764437;chrX_13764502_13764503 chrX_13764353_13764436;chrX_13764503_13764568 89.47 92.31 95.83 95.45 95.45 100.00 88.24 90.00 87.93 91.67 100.00 82.86 96.30 78.95 96.30 94.74 89.47 90.48 82.61 88.89 94.12 95.83 96.43 94.74 91.67 100.00 83.33 83.33 90.91 90.91 87.50 88.89 88.46 89.47 61.54 80.00 80.00 81.25 88.89 81.48 NA 84.09 93.33 85.00 100.00 78.57 56.25 94.44 85.00 90.91 85.19 NA 70.59 60.00 91.30 80.00 92.31 94.12 K alternative_donor CG10445 chr3R - chr3R_3745524_3745586 chr3R_3745524_3745583 chr3R_3745126_3745523;chr3R_3745587_3745843 88.19 NA NA NA NA NA 91.67 100.00 60.00 NA NA 77.78 NA NA NA NA NA NA NA 88.89 NA 90.00 88.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 87.50 NA 87.50 NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA K alternative_donor dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21309084_21310000 chr2L_21309084_21309579 chr2L_21308992_21309083;chr2L_21310001_21310009 100.00 100.00 94.74 96.30 100.00 100.00 96.30 100.00 98.04 95.24 100.00 97.14 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 95.45 90.91 97.92 95.83 100.00 100.00 100.00 95.65 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 97.73 97.56 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 K intron_retention CG15356 chr2L - chr2L_1980428_1980551 chr2L_1980427_1980428;chr2L_1980551_1980552 chr2L_1980253_1980427;chr2L_1980552_1980747 21.05 26.09 16.67 28.57 NA 23.08 82.61 15.00 14.71 7.14 35.71 22.22 44.44 31.58 20.83 18.52 25.00 10.00 14.29 20.69 29.41 65.38 15.38 18.52 29.03 35.00 21.62 32.14 60.00 11.63 27.78 23.53 24.24 17.86 18.52 31.58 13.79 0.00 9.52 17.02 45.83 20.59 22.22 14.29 15.79 25.00 NA 28.21 17.14 11.11 20.00 NA NA NA 21.74 21.05 NA 13.04 K intron_retention CG2950,I_chr2L_4844647_4845086,I_chr2L_4844952_4845086 chr2L - chr2L_4844112_4844168 chr2L_4844111_4844112;chr2L_4844168_4844169 chr2L_4843718_4844111;chr2L_4844169_4844242 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Gp150,I_chr2R_18205316_18205386,I_chr2R_18213233_18213308 chr2R + chr2R_18205274_18205386 chr2R_18205273_18205274;chr2R_18205386_18205387 chr2R_18205216_18205273;chr2R_18205387_18205459 94.74 87.10 96.30 82.35 100.00 100.00 97.95 98.25 93.85 92.31 91.30 96.15 100.00 97.14 97.14 91.89 96.43 94.74 97.37 94.67 96.00 90.00 92.65 95.00 98.61 98.77 98.70 88.00 93.62 84.62 96.55 NA 100.00 92.31 95.65 97.96 90.48 93.10 94.87 90.62 100.00 92.98 86.36 100.00 NA 92.86 92.31 100.00 92.59 90.91 97.83 95.45 93.33 88.89 97.56 92.31 83.33 90.91 K jcn_only_AD CG3719,E_chrX_1273406_1273479,I_chrX_1273406_1273486,RI_chrX_1273406_1273763 chrX - chrX_1273406_1274170;chrX_1273406_1273486 chrX_1273406_1273763 chrX_1273306_1273405;chrX_1274171_1274773 0.00 2.86 0.00 2.70 0.00 2.63 3.39 0.00 0.96 0.00 0.00 0.00 0.00 0.00 1.85 2.33 0.00 0.00 2.17 0.00 0.00 4.26 0.00 0.00 0.00 0.00 2.86 6.06 4.76 0.00 4.26 2.22 3.33 1.39 3.70 2.22 4.00 3.51 2.35 2.25 0.00 0.00 0.00 0.00 2.82 2.82 1.33 0.00 0.00 0.00 1.85 0.00 0.00 0.00 2.22 0.00 2.38 0.00 K intron_retention mmy,I_chr2L_6471715_6473622,RI_chr2L_6471715_6473716 chr2L - chr2L_6471715_6473630 chr2L_6471714_6471715;chr2L_6473630_6473631 chr2L_6471615_6471714;chr2L_6473631_6473722 0.00 0.00 0.00 0.00 0.00 2.08 0.00 1.55 0.00 0.00 3.64 0.74 0.00 0.00 4.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 1.79 3.39 1.23 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor p53,CG17119,sav chr3R - chr3R_18876847_18878643 chr3R_18876847_18876911 chr3R_18876537_18876846;chr3R_18878644_18878670 53.85 44.44 25.00 33.33 36.36 44.44 65.00 35.00 40.91 46.15 50.00 40.00 36.36 30.00 26.67 31.25 37.50 27.27 42.86 50.00 27.27 94.12 71.43 50.00 71.43 36.36 76.19 93.94 81.08 58.82 57.14 53.85 78.95 27.78 85.71 92.31 66.67 57.14 83.33 58.82 80.00 41.18 75.00 88.24 50.00 60.00 57.14 66.67 36.84 68.75 76.92 70.00 44.44 71.43 29.41 54.55 64.29 26.32 K intron_retention Sin3A,I_chr2R_8465791_8466633,I_chr2R_8473578_8480185,RI_chr2R_8479951_8480233 chr2R - chr2R_8464499_8466633 chr2R_8464498_8464499;chr2R_8466633_8466634 chr2R_8464073_8464498;chr2R_8466634_8466733 2.29 4.31 3.37 4.81 2.70 4.00 3.09 2.04 1.88 0.98 3.03 5.36 3.12 3.03 2.50 3.37 2.53 1.37 4.88 3.98 0.00 2.72 3.85 2.29 6.67 5.00 3.88 5.71 1.12 1.27 0.00 1.32 3.35 2.29 0.00 0.78 3.45 1.92 2.23 1.69 0.00 2.05 5.33 0.00 0.00 0.53 0.00 2.45 3.70 1.49 1.57 0.00 0.79 0.00 3.36 2.15 2.20 0.65 K alternative_acceptor mod(r),I_chrX_515823_515874,RI_chrX_515831_515923,I_chrX_516392_517480 chrX + chrX_515831_515923;chrX_515831_515885 chrX_515831_515874 chrX_515763_515830;chrX_515924_515974 63.64 66.67 61.54 63.16 69.23 50.00 72.22 66.67 62.07 50.00 76.92 66.67 50.00 60.00 71.43 63.64 77.78 83.33 55.00 66.67 78.57 54.55 61.11 52.63 50.00 57.14 60.00 71.43 63.64 55.56 63.64 57.14 71.43 71.43 63.64 50.00 70.59 73.33 68.75 70.83 42.86 68.00 70.00 64.71 54.55 55.56 58.82 62.50 52.17 82.35 52.63 63.64 64.71 72.73 58.82 66.67 66.67 78.57 K intron_retention CG11660 chr3L - chr3L_11641420_11641491 chr3L_11641419_11641420;chr3L_11641491_11641492 chr3L_11641340_11641419;chr3L_11641492_11641511 80.95 NA 88.89 88.24 NA NA 71.43 80.95 75.00 NA NA 75.00 NA 80.00 80.00 72.00 NA NA 100.00 66.67 NA NA 83.33 NA NA NA 87.50 100.00 NA NA NA NA NA 83.33 NA 100.00 NA NA NA NA NA 69.23 NA NA NA NA 88.89 NA 78.57 80.00 100.00 77.78 80.00 NA 87.50 NA 92.86 NA K intron_retention Csat chrX - chrX_2597441_2597537 chrX_2597440_2597441;chrX_2597537_2597538 chrX_2597321_2597440;chrX_2597538_2597885 6.90 8.96 10.53 10.99 3.64 8.33 15.07 5.49 5.93 0.00 8.51 7.00 5.56 6.56 12.12 4.00 5.17 6.67 6.67 5.29 6.12 25.45 5.80 9.43 17.65 13.21 24.07 25.81 8.00 6.41 7.89 3.85 5.66 6.96 8.00 7.27 8.96 4.17 7.81 5.33 14.75 7.08 4.17 4.71 4.17 7.69 0.00 6.36 8.11 10.81 6.90 2.08 0.00 10.20 7.95 4.08 0.00 3.85 K alternative_donor BM-40-SPARC,I_chr3R_22696095_22696231,I_chr3R_22696095_22696291,I_chr3R_22696095_22697413 chr3R - chr3R_22696095_22696291;chr3R_22696095_22697413;chr3R_22696095_22696231 chr3R_22696095_22697647 chr3R_22695995_22696094;chr3R_22697648_22697767 99.31 99.44 99.32 99.21 99.47 99.33 99.01 99.31 99.39 99.29 99.38 99.25 99.31 99.25 99.21 99.19 99.17 99.36 99.41 99.15 99.49 99.82 99.26 99.33 98.84 99.30 99.19 99.60 98.71 99.36 98.67 99.27 99.51 99.15 99.34 98.27 99.65 99.31 99.54 98.40 98.97 99.32 99.20 99.60 99.43 99.08 99.48 97.49 99.17 99.63 99.04 99.34 99.66 99.40 98.96 99.43 99.72 99.45 K jcn_only_AA CG14408 chrX - chrX_14724534_14725124 chrX_14724541_14725124 chrX_14725125_14725543;chrX_14724466_14724533 90.00 91.30 NA NA NA NA NA NA 92.11 100.00 NA 86.67 NA 90.00 86.36 NA 90.91 90.00 NA 92.68 NA 86.05 85.00 88.24 NA 82.61 90.62 100.00 92.86 80.56 85.00 NA 97.22 96.88 NA NA 94.87 92.11 86.67 84.62 90.00 85.29 NA 95.00 95.45 88.46 NA 83.33 91.43 90.48 77.14 96.55 NA NA 79.17 NA 85.00 86.96 N alternative_donor RpL6 chr3R - chr3R_27421324_27421603;chr3R_27421324_27421398 chr3R_27421324_27421769 chr3R_27421243_27421323;chr3R_27421770_27422070 99.96 100.00 99.98 99.97 99.96 99.96 99.94 99.95 99.95 99.89 99.97 99.94 99.97 99.94 99.96 99.98 99.91 99.98 99.97 99.97 100.00 99.36 99.97 99.96 100.00 99.95 99.81 99.59 99.62 99.97 99.94 100.00 99.89 99.93 99.95 99.93 99.96 99.97 99.96 99.95 99.87 99.96 99.93 99.98 99.95 99.97 99.95 99.92 99.95 99.96 99.97 100.00 99.97 99.97 99.94 99.95 99.96 99.89 K alternative_acceptor RpL29,I_chr2R_17184688_17191389 chr2R + chr2R_17181667_17181762 chr2R_17181667_17181735 chr2R_17181559_17181666;chr2R_17181763_17181909 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.95 100.00 100.00 99.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N jcn_only_AD e(r) chrX - chrX_8799622_8799801;chrX_8799622_8800141 chrX_8799622_8799982 chrX_8799538_8799621;chrX_8800142_8800333 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention CG34140,CG34140_Mkp,noncoding_9561 chr3L - chr3L_184068_184131 chr3L_184067_184068;chr3L_184131_184132 chr3L_184008_184067;chr3L_184132_184197 14.29 NA NA 14.29 NA NA NA NA 16.67 NA NA 9.52 16.67 NA NA NA NA NA NA 21.05 NA NA 0.00 13.33 NA 18.75 11.76 22.22 NA NA 11.76 NA NA NA NA 17.65 11.11 15.38 12.50 NA NA 11.76 NA NA NA NA NA NA 14.29 NA 31.58 NA NA NA NA NA NA NA K intron_retention CG1718 chrX - chrX_21163958_21164182 chrX_21163957_21163958;chrX_21164182_21164183 chrX_21163741_21163957;chrX_21164183_21164557 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 86.67 100.00 100.00 88.89 NA 90.91 NA 100.00 100.00 NA 100.00 91.67 94.12 NA 88.89 100.00 NA 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 NA NA 100.00 100.00 91.67 100.00 92.86 K intron_retention rl,I_chr2RHet_199154_201722,I_chr2RHet_199154_207044,RI_chr2RHet_203476_203577,RI_chr2RHet_203592_207044,I_chr2RHet_232696_247338,RI_chr2RHet_240197_247338 chr2RHet + chr2RHet_198760_198984 chr2RHet_198759_198760;chr2RHet_198984_198985 chr2RHet_198753_198759;chr2RHet_198985_199153 95.24 100.00 88.89 96.77 NA 87.50 91.89 84.62 92.31 NA NA 91.67 100.00 85.71 NA 93.10 NA NA 100.00 95.24 NA NA 92.31 NA NA 100.00 91.67 NA NA NA NA NA NA 86.21 NA 100.00 87.50 NA 100.00 100.00 NA 84.62 NA 100.00 NA NA NA NA 87.10 NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA K intron_retention l(2)NC136,I_chr2R_1545723_1546024 chr2R - chr2R_1549674_1549731 chr2R_1549673_1549674;chr2R_1549731_1549732 chr2R_1548864_1549673;chr2R_1549732_1549866 0.00 0.00 0.00 2.08 2.08 0.00 2.78 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 1.08 1.87 0.00 0.00 3.12 0.00 0.00 1.32 4.35 5.71 0.00 0.00 0.00 0.00 0.00 1.65 2.22 0.00 0.00 3.77 0.00 3.57 3.45 0.00 0.00 0.00 0.00 0.00 0.00 2.00 1.29 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 K jcn_only_AD CG34449,I_chrX_9222628_9227416,RI_chrX_9232665_9233022,RI_chrX_9249209_9250033,RI_chrX_9249212_9250033,RI_chrX_9249212_9250244 chrX - chrX_9227656_9231026 chrX_9227656_9230957 chrX_9227417_9227655;chrX_9231027_9231270 87.23 86.15 92.50 93.88 87.23 83.78 90.70 90.32 90.00 85.98 75.51 90.91 89.74 92.31 93.55 89.66 86.05 97.78 90.48 90.40 97.37 80.58 84.38 81.19 75.61 90.24 85.71 88.68 81.03 88.60 96.23 90.16 92.92 84.72 81.03 86.59 85.84 83.65 87.91 75.59 84.75 87.25 90.91 84.96 90.43 82.47 78.43 86.67 85.23 87.23 80.73 90.00 93.44 75.93 86.15 78.57 95.00 94.50 K alternative_donor CG10407,ird5,CG10185 chr3R - chr3R_11870998_11871076 chr3R_11870998_11871064 chr3R_11870943_11870997;chr3R_11871077_11871396 5.56 NA NA NA NA NA 0.00 14.29 5.56 NA NA NA NA NA NA NA NA NA NA NA NA NA 6.90 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 6.67 NA NA NA 0.00 NA NA 15.38 NA NA NA NA 14.29 NA NA 5.56 NA K alternative_acceptor CG40351 chr3LHet + chr3LHet_594695_594756;chr3LHet_594695_594765 chr3LHet_594695_594779 chr3LHet_594687_594694;chr3LHet_594780_595060 0.00 NA NA 9.09 NA NA NA 0.00 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA K intron_retention PMCA,I_chr4_350028_350896,E_chr4_350055_363541,I_chr4_350064_350896,I_chr4_350959_363547,I_chr4_352629_354970,I_chr4_352629_358161,RI_chr4_355160_363547,I_chr4_371836_372509,I_chr4_373671_374568,I_chr4_376108_379519 chr4 - chr4_350966_363547 chr4_350965_350966;chr4_363547_363548 chr4_350897_350965;chr4_363548_363641 40.91 NA 36.36 54.55 NA 26.32 50.00 45.45 53.33 NA NA 46.15 3.85 NA NA 55.56 NA NA 46.67 40.91 NA 0.00 43.75 NA NA NA NA NA NA NA 35.71 NA NA 47.37 NA NA NA NA NA 46.15 NA 44.44 NA 25.00 NA 35.00 33.33 46.15 39.13 NA 29.41 NA NA NA 26.67 NA NA 22.22 K mutually_exclusive lig,I_chr2R_3960977_3961116,I_chr2R_3960977_3961119,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3960284_3960871,chr2R_3960977_3961104 chr2R_3960284_3960631,chr2R_3960740_3961104 chr2R_3960872_3960976 chr2R_3960632_3960739 chr2R_3959868_3960283;chr2R_3961105_3961205 100.00 86.67 100.00 81.82 100.00 100.00 86.67 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 89.47 94.74 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 97.73 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor MP1,RI_chr3R_134150_134311 chr3R + chr3R_134150_134341 chr3R_134150_134311 chr3R_134050_134149;chr3R_134342_134411 6.25 7.35 1.82 23.61 6.52 2.70 14.04 6.96 6.67 2.33 14.29 7.14 14.81 7.69 5.56 9.23 7.69 5.00 7.69 5.29 7.14 3.42 4.29 3.36 7.69 26.67 4.05 3.12 6.25 7.02 5.26 3.57 3.88 6.38 8.93 15.00 1.09 3.95 5.41 3.36 16.36 6.67 6.45 2.46 8.33 5.71 1.47 5.26 4.69 6.41 3.88 5.17 1.64 7.81 6.98 6.52 2.40 2.00 K intron_retention htt,I_chr3R_24527763_24528033,I_chr3R_24542203_24543363 chr3R + chr3R_24539943_24540389 chr3R_24539942_24539943;chr3R_24540389_24540390 chr3R_24539665_24539942;chr3R_24540390_24540800 0.00 NA NA 4.76 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 6.67 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA K jcn_only_AD sar1,I_chr3R_18184656_18185246,I_chr3R_18185015_18185246,I_chr3R_18185148_18185246 chr3R + chr3R_18184656_18185246;chr3R_18185148_18185246;chr3R_18185015_18185246 chr3R_18184351_18185246 chr3R_18185247_18185346;chr3R_18184285_18184350 99.08 99.47 99.55 99.43 99.30 98.60 98.96 99.43 98.69 97.31 98.84 99.04 99.36 99.66 98.68 99.02 99.25 99.70 99.19 98.18 99.07 98.50 98.70 99.20 97.53 98.75 98.80 97.84 96.17 99.71 98.04 99.66 99.50 99.23 99.73 99.19 99.52 98.50 99.01 99.47 99.47 99.26 99.26 99.04 98.86 98.83 99.34 99.64 99.05 97.98 99.01 98.40 100.00 98.49 99.50 99.08 99.61 99.77 K intron_retention CG31919,CG33995,F_chr2L_5045484_5046146 chr2L + chr2L_5045926_5046146 chr2L_5045925_5045926;chr2L_5046146_5046147 chr2L_5045822_5045925;chr2L_5046147_5046246 0.00 0.00 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor I_chr2L_19388570_19389922,CG17544 chr2L - chr2L_19393657_19398346;chr2L_19393657_19398350 chr2L_19393657_19398334 chr2L_19393497_19393656;chr2L_19398351_19398401 27.68 26.39 28.10 26.07 27.59 22.12 27.10 23.87 29.22 32.20 29.76 24.88 30.99 21.67 39.32 25.73 32.88 22.86 31.53 25.20 24.05 34.95 26.79 27.68 36.76 28.04 33.33 36.59 48.11 26.40 27.27 31.31 36.07 29.68 26.89 30.56 29.17 33.82 30.38 25.17 33.57 28.14 25.26 23.58 23.81 26.44 23.88 31.25 24.90 29.82 32.11 29.23 32.86 23.26 24.48 23.66 25.64 25.73 K jcn_only_AD Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911803_5913354 chr2R_5911803_5913333 chr2R_5911703_5911802;chr2R_5913355_5913433 39.64 NA NA NA NA NA NA 34.78 48.72 NA NA 26.92 NA NA NA NA NA NA NA 40.00 23.81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 53.12 NA NA NA NA NA NA 39.29 NA NA NA NA NA 56.00 NA NA NA K jcn_only_AA CG5941,RI_chrX_5932013_5932056 chrX + chrX_5932013_5932073 chrX_5932013_5932056 chrX_5931913_5932012;chrX_5932074_5932120 0.00 0.00 0.00 0.00 0.76 1.11 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.61 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.54 0.00 0.72 0.00 0.70 0.00 0.00 0.69 0.00 0.00 K intron_retention zfh1 chr3R + chr3R_26599127_26599294 chr3R_26599126_26599127;chr3R_26599294_26599295 chr3R_26599058_26599126;chr3R_26599295_26599458 17.65 13.33 NA 18.75 NA NA NA 25.93 17.65 NA NA 17.65 NA NA NA NA 13.33 NA 12.50 26.32 NA 70.97 NA 25.00 NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA 36.36 NA 16.67 NA NA NA NA NA NA 13.64 NA NA NA NA NA 20.00 NA NA NA K alternative_acceptor CG6805 chr2R + chr2R_12894564_12894770 chr2R_12894564_12894637 chr2R_12894294_12894563;chr2R_12894771_12895109 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 98.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 93.75 100.00 100.00 100.00 92.86 100.00 100.00 96.77 100.00 95.45 100.00 K jcn_only_AD sec23,I_chr3R_1474873_1475080,I_chr3R_1474899_1475080,I_chr3R_1474960_1475051,I_chr3R_1477727_1478102 chr3R + chr3R_1474873_1475080;chr3R_1474899_1475080 chr3R_1474960_1475080 chr3R_1475081_1475151;chr3R_1474860_1474872 99.09 97.96 98.98 100.00 100.00 100.00 99.24 98.80 99.44 94.44 100.00 99.45 99.03 97.62 100.00 99.39 97.14 100.00 100.00 98.14 98.44 98.81 99.35 98.57 98.70 98.98 100.00 98.20 98.44 100.00 98.96 100.00 100.00 99.28 100.00 98.95 99.11 99.15 100.00 99.09 96.55 98.31 98.72 99.17 96.67 98.51 100.00 96.77 99.48 99.33 98.80 98.94 100.00 98.28 98.17 100.00 100.00 98.04 K jcn_only_AA Lerp chr3R - chr3R_22688286_22688358 chr3R_22688289_22688358 chr3R_22688359_22688432;chr3R_22688202_22688285 23.81 NA NA NA NA NA 15.15 23.81 28.57 NA NA 18.75 NA NA NA 12.00 NA NA NA 33.33 NA NA 19.05 NA NA NA 27.27 NA NA NA 31.82 NA NA 14.81 NA NA NA NA 23.33 NA NA 29.03 NA NA NA NA NA NA 39.29 NA 31.43 NA NA NA 22.73 NA NA NA K intron_retention CG14812,I_chrX_1754047_1754089,E_chrX_1755139_1755188,I_chrX_1757755_1757801 chrX - chrX_1752831_1752900 chrX_1752830_1752831;chrX_1752900_1752901 chrX_1752769_1752830;chrX_1752901_1753013 12.50 9.09 8.05 22.83 7.87 12.20 35.48 13.68 7.44 8.24 11.76 17.74 17.91 16.67 15.84 15.60 11.59 12.50 12.36 14.41 21.54 7.78 9.09 15.28 38.30 52.11 23.40 22.45 35.71 11.94 16.96 11.94 7.50 15.46 20.00 30.43 6.67 8.54 11.21 11.57 28.57 15.56 14.75 9.28 8.57 9.78 10.28 15.79 19.05 6.45 10.00 7.41 16.07 12.50 16.09 11.11 7.48 15.52 K intron_retention CG42533,F_chr2L_7476906_7476978 chr2L - chr2L_7480327_7480560 chr2L_7480326_7480327;chr2L_7480560_7480561 chr2L_7478851_7480326;chr2L_7480561_7480896 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 1.89 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 6.67 0.00 NA NA 3.45 NA NA NA N jcn_only_AA CkIIalpha,I_chr3L_23092989_23093344,RI_chr3L_23094196_23095221 chr3L + chr3L_23092824_23093344;chr3L_23092824_23093319 chr3L_23092824_23092891 chr3L_23092680_23092823;chr3L_23093345_23093444 0.00 NA NA NA NA NA 48.39 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG1908 chrX + chrX_11043885_11044668 chrX_11043885_11043957;chrX_11044148_11044668 chrX_11043958_11044147 chrX_11043870_11043884;chrX_11044669_11046160 100.00 100.00 90.91 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 94.12 NA 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 83.33 100.00 87.50 K intron_retention Csp,I_chr3L_22260888_22262032,RI_chr3L_22262215_22262452,I_chr3L_22264863_22266536,I_chr3L_22273037_22275661 chr3L + chr3L_22260888_22262452 chr3L_22260887_22260888;chr3L_22262452_22262453 chr3L_22260788_22260887;chr3L_22262453_22262552 0.00 0.00 0.00 0.00 0.00 1.32 1.91 0.00 0.00 0.00 0.00 0.00 0.00 1.27 2.06 0.94 2.27 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CycT,I_chr3L_17548631_17550687 chr3L - chr3L_17545774_17545844 chr3L_17545773_17545774;chr3L_17545844_17545845 chr3L_17545613_17545773;chr3L_17545845_17546322 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 N intron_retention Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16107821_16109131 chr3L_16107820_16107821;chr3L_16109131_16109132 chr3L_16107721_16107820;chr3L_16109132_16109341 100.00 NA NA NA NA NA NA NA 100.00 100.00 100.00 100.00 NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA 62.07 100.00 NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 K jcn_only_AA CG42248,I_chrX_705402_712468 chrX - chrX_713860_714537 chrX_714112_714537 chrX_714538_716002;chrX_713726_713859 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG40485 chrX - chrX_22363289_22363599 chrX_22363297_22363599 chrX_22363600_22364196;chrX_22363005_22363288 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 95.83 NA 100.00 100.00 NA NA 92.31 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 88.89 100.00 92.31 100.00 100.00 100.00 100.00 92.31 NA 95.00 100.00 100.00 95.83 100.00 100.00 NA 94.12 100.00 100.00 100.00 100.00 94.44 92.86 94.44 100.00 100.00 100.00 100.00 88.89 95.65 100.00 K intron_retention yu chrX - chrX_5309952_5310222 chrX_5309951_5309952;chrX_5310222_5310223 chrX_5309561_5309951;chrX_5310223_5311407 2.68 3.20 3.23 4.12 0.83 1.87 0.00 3.43 2.31 2.33 0.00 2.06 2.80 5.17 5.00 3.07 1.74 3.60 0.98 2.33 0.84 15.20 2.35 3.94 2.60 2.38 6.79 9.72 3.23 2.36 2.41 2.13 5.41 2.39 2.15 3.77 3.40 3.92 3.43 3.57 0.00 3.06 4.46 1.45 0.00 1.54 4.82 5.88 7.50 2.82 4.23 6.25 0.00 0.00 2.68 0.00 0.00 0.00 K jcn_only_AA cv-c,RI_chr3R_10258928_10265129,RI_chr3R_10301040_10306363,noncoding_16722,RI_chr3R_10306635_10307255 chr3R - chr3R_10306459_10307301 chr3R_10306635_10307301 chr3R_10307302_10307304;chr3R_10306434_10306458 91.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 91.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CaMKI,I_chr4_466377_467256,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,RI_chr4_467374_467424,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_466592_467446;chr4_466858_467446;chr4_466798_467446 chr4_466798_467301,chr4_466592_467301,chr4_466858_467301;chr4_467374_467446 chr4_467302_467373 chr4_466585_466591;chr4_467447_467481 71.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 71.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG1161,I_chr3R_1182079_1182146 chr3R + chr3R_1181665_1182146 chr3R_1181664_1181665;chr3R_1182146_1182147 chr3R_1181556_1181664;chr3R_1182147_1182246 25.00 NA NA 13.33 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA 23.81 NA 22.22 NA NA NA NA NA 43.75 NA 30.77 NA NA 1.52 NA NA NA NA NA NA 46.15 NA 35.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 K jcn_only_AA CG17082,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_645254_645312;chr2R_645254_645316 chr2R_645254_645306 chr2R_645185_645253;chr2R_645317_645382 96.30 89.29 100.00 96.52 95.45 95.24 97.78 96.55 96.08 NA 97.44 93.83 96.43 84.62 98.15 95.40 96.23 100.00 94.34 95.59 92.11 NA 100.00 97.73 100.00 96.00 100.00 NA 100.00 96.67 94.44 89.29 100.00 96.84 95.24 96.30 96.30 92.86 100.00 97.10 97.44 97.98 95.83 80.56 92.86 96.36 91.84 96.77 97.14 98.39 97.67 89.66 NA 100.00 92.50 95.31 96.08 96.00 K jcn_only_AA CG42533,F_chr2L_7476906_7476978 chr2L - chr2L_7478784_7478850 chr2L_7478793_7478850 chr2L_7478851_7480323;chr2L_7477242_7478783 90.91 90.32 81.25 85.96 92.31 95.65 91.53 88.89 91.38 96.30 NA 90.00 93.10 88.89 93.55 81.08 100.00 91.67 90.91 92.22 90.91 95.35 89.80 90.91 95.45 95.24 90.32 81.82 92.11 86.11 95.56 NA 93.33 82.22 90.00 86.84 89.47 100.00 88.89 84.75 NA 91.25 96.30 89.47 NA 92.31 NA 91.07 93.06 NA 88.89 82.61 NA NA 88.37 NA NA 97.14 K intron_retention Arc-p34,snoRNA:Psi18S-640e,snoRNA:Psi18S-525h,snoRNA:Psi18S-640f,snoRNA:Psi18S-525i,snoRNA:Psi18S-640g,snoRNA:Psi18S-525j chr2L + chr2L_20421118_20422144 chr2L_20421117_20421118;chr2L_20422144_20422145 chr2L_20420897_20421117;chr2L_20422145_20422236 0.00 0.00 0.00 0.15 0.00 0.54 0.00 0.60 0.20 0.00 0.00 0.14 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.64 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.28 0.51 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RPA2,RI_chr2L_20925851_20925909 chr2L - chr2L_20925851_20925913 chr2L_20925851_20925909 chr2L_20925751_20925850;chr2L_20925914_20925975 1.65 1.69 1.15 0.44 1.38 0.75 1.65 0.44 1.10 1.06 0.79 1.15 1.49 0.81 1.11 0.00 0.76 0.00 1.42 1.65 1.99 5.11 4.29 1.04 3.53 4.67 3.68 1.76 12.35 1.50 4.27 1.77 1.57 1.75 3.26 1.83 1.82 2.17 2.91 0.59 6.12 0.71 0.00 2.34 2.00 1.96 2.19 3.53 1.16 2.37 3.83 1.61 1.40 1.11 1.80 1.77 0.88 2.02 K intron_retention CG10948,I_chr3L_12840257_12841136 chr3L - chr3L_12838954_12841469 chr3L_12838953_12838954;chr3L_12841469_12841470 chr3L_12838834_12838953;chr3L_12841470_12842195 22.88 30.77 26.67 23.53 NA 25.00 37.50 25.81 28.21 NA NA 22.22 26.32 27.78 40.00 20.00 26.67 NA 33.33 29.41 33.33 21.43 22.22 18.52 42.86 25.00 30.00 17.65 NA 25.00 6.06 23.53 10.34 36.67 11.11 9.52 20.00 25.00 17.14 10.64 22.22 34.29 37.50 11.11 0.00 10.00 9.09 10.71 32.14 20.00 30.77 30.77 14.29 22.22 20.83 9.09 16.13 8.33 K alternative_acceptor RI_chr3L_19787260_19787323,Ir76a,RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19795941_19796001 chr3L_19795941_19795997 chr3L_19795436_19795940;chr3L_19796002_19796481 90.48 NA 88.89 77.78 NA NA 87.50 72.73 90.00 NA 100.00 93.33 NA NA 100.00 87.50 NA NA NA 90.91 NA NA NA 90.91 NA 80.00 NA NA NA 100.00 77.78 100.00 87.50 100.00 NA NA 75.00 NA 90.91 91.67 90.00 92.86 NA 90.00 91.67 85.71 87.50 92.86 92.86 90.00 100.00 NA 100.00 77.78 NA 77.78 94.12 90.48 K alternative_donor Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754284_15755268 chrX_15754356_15755268 chrX_15755269_15755284;chrX_15754256_15754283 55.56 NA NA NA NA NA NA NA 55.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention qkr58E-2,I_chr2R_18305142_18305207 chr2R + chr2R_18305142_18305197 chr2R_18305141_18305142;chr2R_18305197_18305198 chr2R_18305042_18305141;chr2R_18305198_18305536 83.02 80.77 79.31 96.12 87.18 82.98 80.19 75.68 86.08 54.05 80.85 79.67 87.67 87.93 85.96 82.50 91.23 83.64 77.03 78.18 92.73 68.35 91.94 86.54 88.89 92.59 92.98 82.93 77.78 67.21 83.10 84.48 82.28 91.45 85.45 78.46 82.35 79.49 83.02 72.73 89.47 87.30 83.02 78.85 88.89 75.76 81.82 76.36 88.89 82.76 86.15 75.00 80.85 84.09 90.00 86.44 87.93 79.41 K jcn_only_AA bves chrX + chrX_20925770_20931521 chrX_20925770_20931518 chrX_20925764_20925769;chrX_20931522_20932584 58.88 55.00 NA 65.22 NA NA NA 66.67 53.33 NA NA NA NA NA NA NA NA NA NA 54.17 NA NA NA NA NA NA NA NA NA NA NA NA NA 39.13 NA NA NA NA NA NA 54.55 60.61 NA 80.00 NA NA NA NA 57.14 NA 65.52 NA NA NA 63.64 NA NA NA K intron_retention CG3164,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_124025_124086 chr2L_124024_124025;chr2L_124086_124087 chr2L_123856_124024;chr2L_124087_124920 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG17737,I_chr3L_3223527_3224313,I_chr3L_3223650_3223769,I_chr3L_3223943_3224313 chr3L + chr3L_3223527_3223769 chr3L_3223650_3223769 chr3L_3223770_3223869;chr3L_3223475_3223526 0.30 0.36 0.30 0.00 0.40 0.00 0.38 0.00 0.30 0.53 0.41 0.19 0.00 0.34 0.69 0.15 0.38 0.38 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.27 1.61 0.52 0.00 0.49 1.16 1.85 0.00 0.44 0.00 0.38 0.00 0.31 0.61 0.77 0.21 0.42 0.29 1.25 0.31 0.29 0.83 0.51 0.00 0.00 0.30 0.34 0.00 0.00 0.00 0.16 0.45 K intron_retention CG32343,RI_chr3L_326725_326866 chr3L - chr3L_327489_327545 chr3L_327488_327489;chr3L_327545_327546 chr3L_327135_327488;chr3L_327546_327677 0.00 0.00 0.00 2.70 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 2.13 0.00 7.89 5.88 4.35 2.94 12.50 0.00 4.17 0.00 0.00 0.00 0.00 2.86 3.12 0.00 0.00 2.27 11.11 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 5.71 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL29,I_chr2R_17184688_17191389 chr2R + chr2R_17181384_17181558 chr2R_17181383_17181384;chr2R_17181558_17181559 chr2R_17181311_17181383;chr2R_17181559_17181664 10.62 25.93 2.94 12.96 2.44 5.71 7.84 6.25 7.37 5.88 5.00 7.25 3.64 10.71 5.13 10.53 9.09 6.82 11.36 7.22 6.67 NA 18.52 8.70 0.00 7.14 20.69 33.33 25.00 NA 13.64 25.00 50.00 14.00 NA NA 8.47 10.53 6.67 16.13 NA 10.34 10.71 15.38 16.13 36.84 18.18 46.15 21.05 14.71 25.00 8.89 18.18 25.00 9.52 6.45 12.50 58.97 K jcn_only_AD CG12703 chrX + chrX_19645123_19645380;chrX_19645198_19645380;chrX_19645200_19645380;chrX_19645171_19645380;chrX_19644924_19645380 chrX_19645202_19645380 chrX_19645381_19645579;chrX_19644833_19644923 0.00 0.00 0.00 1.16 1.03 0.00 0.00 0.55 0.76 0.00 0.00 0.43 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.98 0.00 2.41 0.86 0.00 0.00 0.00 0.00 2.20 0.00 0.53 0.00 0.00 0.00 1.08 0.00 0.76 0.00 0.89 0.00 0.00 0.00 0.00 2.04 0.94 0.90 0.00 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG31038,I_chr3R_25702915_25703648,I_chr3R_25705533_25722419,I_chr3R_25727788_25727905 chr3R + chr3R_25702915_25703648;chr3R_25702989_25703648;chr3R_25702895_25703648;chr3R_25702897_25703648;chr3R_25702901_25703648;chr3R_25702838_25703648 chr3R_25702970_25703648 chr3R_25703649_25703748;chr3R_25702831_25702837 14.29 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 19.05 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG11266,RI_chr2L_7033019_7034764,I_chr2L_7034274_7035406,RI_chr2L_7034911_7035074,I_chr2L_7051093_7051366 chr2L + chr2L_7034911_7035406 chr2L_7034911_7035074 chr2L_7034869_7034910;chr2L_7035407_7035506 88.89 93.75 90.91 100.00 92.86 100.00 100.00 83.33 91.89 75.00 80.00 89.29 93.75 100.00 83.33 88.89 93.33 90.91 92.31 91.43 100.00 70.00 79.17 81.82 86.67 100.00 93.33 100.00 90.00 93.75 85.19 92.31 66.67 86.36 77.78 NA 75.00 73.68 68.00 84.21 90.00 88.89 92.31 83.33 100.00 82.14 75.00 83.33 87.50 78.57 80.77 81.82 93.75 70.00 88.24 80.00 100.00 95.24 K alternative_donor Tango5,noncoding_22970,I_chrX_10659836_10661185 chrX - chrX_10656468_10658389;chrX_10656468_10658117 chrX_10656468_10658202 chrX_10656442_10656467;chrX_10658390_10658400 90.91 76.92 95.24 95.45 88.24 83.33 73.91 88.00 90.91 90.91 83.33 91.89 92.31 93.75 96.43 90.91 93.75 93.75 95.24 92.00 94.12 91.67 90.48 95.45 85.71 85.00 80.00 83.33 82.35 86.67 84.00 100.00 100.00 93.10 100.00 90.00 90.91 94.44 90.00 88.89 100.00 90.24 86.67 87.50 100.00 80.00 76.47 92.86 88.57 90.91 81.25 92.86 100.00 83.33 91.67 90.91 90.00 88.89 K intron_retention CG8128 chrX + chrX_15592721_15592792 chrX_15592720_15592721;chrX_15592792_15592793 chrX_15592356_15592720;chrX_15592793_15592914 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA NA 3.23 NA 0.00 NA 0.00 0.00 6.67 NA 0.00 0.00 K alternative_donor drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9390195;chr2R_9389597_9390151;chr2R_9389597_9389907;chr2R_9389597_9390293;chr2R_9389597_9389751;chr2R_9389597_9390264;chr2R_9389597_9389753;chr2R_9389597_9389757 chr2R_9389597_9389940 chr2R_9389497_9389596;chr2R_9390294_9390295 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 2.41 0.00 0.00 3.33 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive Rm62 chr3R - chr3R_1830849_1831671,chr3R_1831837_1833758 chr3R_1830849_1830927,chr3R_1831020_1833758 chr3R_1831672_1831836 chr3R_1830928_1831019 chr3R_1829739_1830848;chr3R_1833759_1834028 93.55 93.55 86.36 98.04 94.12 100.00 90.48 97.22 91.84 96.23 100.00 93.94 96.97 90.91 95.00 94.74 90.00 88.24 92.86 93.48 90.91 66.67 90.00 92.45 87.10 83.33 95.83 97.18 90.00 93.55 100.00 97.06 96.30 92.86 88.57 86.67 93.59 97.87 93.88 94.34 96.55 88.64 94.44 92.86 100.00 94.87 90.24 94.64 88.57 95.35 93.48 93.33 88.89 88.46 92.00 92.11 100.00 97.06 K intron_retention g,I_chrX_13628772_13629563 chrX - chrX_13622648_13622717 chrX_13622647_13622648;chrX_13622717_13622718 chrX_13621935_13622647;chrX_13622718_13622850 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.90 3.23 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Eno,EI_chr2L_1727403_1727645,I_chr2L_1728229_1728302 chr2L - chr2L_1728229_1728302 chr2L_1728233_1728302 chr2L_1728303_1728402;chr2L_1728129_1728228 85.96 95.45 86.96 85.71 NA NA 70.83 92.59 79.41 NA NA 89.55 NA 80.00 80.00 90.24 NA NA 96.55 80.65 NA NA 92.59 83.87 NA NA NA NA 76.19 92.00 83.72 NA 95.65 84.78 NA NA NA NA NA 76.47 NA 82.86 81.82 86.96 90.91 85.19 86.21 78.57 87.23 NA 90.62 NA NA 95.24 91.30 NA NA 76.67 K jcn_only_AA CG15160 chr2L + chr2L_18593414_18593478 chr2L_18593414_18593457 chr2L_18593290_18593413;chr2L_18593479_18593586 0.00 3.45 0.00 0.00 0.00 0.00 0.00 1.96 1.20 NA 0.00 1.52 8.57 0.00 0.00 1.64 0.00 3.92 4.00 0.69 0.00 0.00 1.43 0.00 0.00 2.44 3.03 5.41 0.00 0.00 0.00 5.56 0.00 1.47 0.00 0.00 3.57 2.78 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 6.06 0.00 0.00 0.00 0.00 0.00 4.17 K intron_retention flr chr3L + chr3L_13407701_13407765 chr3L_13407700_13407701;chr3L_13407765_13407766 chr3L_13407437_13407700;chr3L_13407766_13408820 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 4.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention br,I_chrX_1517022_1518170 chrX + chrX_1530946_1531032 chrX_1530945_1530946;chrX_1531032_1531033 chrX_1530672_1530945;chrX_1531033_1531172 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 11.76 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG42533,EI_chr2L_7473200_7473297,RI_chr2L_7473200_7473419,F_chr2L_7476906_7476978 chr2L - chr2L_7473200_7473656 chr2L_7473199_7473200;chr2L_7473656_7473657 chr2L_7473100_7473199;chr2L_7473657_7473889 92.86 100.00 92.00 71.88 100.00 100.00 95.65 94.44 89.47 100.00 92.86 91.43 100.00 89.47 95.00 90.48 92.86 84.21 96.00 94.92 94.12 91.67 85.71 95.65 100.00 94.12 86.36 92.31 80.00 93.75 87.50 94.12 88.46 91.43 93.75 79.17 94.44 90.91 93.33 89.29 91.30 97.06 100.00 95.24 95.45 88.89 88.89 96.15 82.69 94.12 95.65 77.78 84.62 93.75 90.32 80.95 93.75 85.19 K mutually_exclusive par-1,EFI_chr2R_15361473_15362032,RI_chr2R_15361473_15362035,I_chr2R_15361473_15366246,I_chr2R_15362147_15365120,F_chr2R_15362147_15365138,I_chr2R_15362147_15365165,RI_chr2R_15363358_15365120,I_chr2R_15363358_15366246,I_chr2R_15365210_15370456 chr2R + chr2R_15361473_15366246,chr2R_15366371_15370456 chr2R_15361473_15365120,chr2R_15365210_15370456 chr2R_15366247_15366370 chr2R_15365121_15365209 chr2R_15361373_15361472;chr2R_15370457_15370556 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention bor chr3R - chr3R_12087912_12087983 chr3R_12087911_12087912;chr3R_12087983_12087984 chr3R_12087713_12087911;chr3R_12087984_12088808 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 1.56 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG13900,snoRNA:Me28S-C788b,snoRNA:Me28S-C788a,I_chr3L_830745_830907 chr3L - chr3L_827002_827181 chr3L_827001_827002;chr3L_827181_827182 chr3L_826946_827001;chr3L_827182_827236 0.96 0.77 1.29 2.29 0.91 0.00 1.69 1.47 1.52 0.00 0.00 1.39 1.09 0.93 1.32 1.80 1.04 1.24 0.37 1.41 0.00 1.83 0.74 0.86 1.24 0.00 1.88 3.09 0.00 0.53 0.24 1.27 3.12 1.24 0.48 0.79 0.00 0.99 0.00 0.67 0.66 1.06 0.96 0.78 2.04 1.26 0.82 1.52 0.72 0.80 0.61 0.00 1.05 1.43 0.49 0.62 1.21 1.64 K alternative_acceptor TMS1 chr3L + chr3L_16407594_16407920;chr3L_16407594_16407914;chr3L_16407594_16407893;chr3L_16407594_16407902 chr3L_16407594_16407905 chr3L_16407384_16407593;chr3L_16407921_16408056 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA Nca,CG7646 chr3L + chr3L_19986423_19988473;chr3L_19986423_19987267;chr3L_19986423_19986483 chr3L_19986423_19989780 chr3L_19986365_19986422 96.30 NA 96.30 80.28 NA 95.00 76.09 97.96 97.67 NA NA 98.15 94.74 97.44 95.00 96.00 NA NA 93.33 97.06 NA NA 100.00 100.00 NA 96.15 96.30 NA 65.62 NA 96.77 NA NA 92.11 100.00 NA NA NA NA 100.00 100.00 95.35 96.88 100.00 NA 97.96 100.00 92.59 98.46 96.97 96.15 NA NA 95.45 100.00 96.15 93.33 94.59 K intron_retention l(3)02640,I_chr3L_1337063_1337270 chr3L + chr3L_1337063_1337270 chr3L_1337062_1337063;chr3L_1337270_1337271 chr3L_1337032_1337062;chr3L_1337271_1337370 21.37 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA 29.41 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Tif-IA,RI_chr2L_22250854_22257652 chr2L + chr2L_22253333_22253386 chr2L_22253332_22253333;chr2L_22253386_22253387 chr2L_22253256_22253332;chr2L_22253387_22253685 100.00 98.85 98.90 99.19 98.11 98.51 99.36 100.00 99.48 96.55 100.00 99.42 100.00 100.00 100.00 99.52 99.03 100.00 99.35 99.30 98.25 100.00 100.00 100.00 100.00 98.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.80 98.84 100.00 100.00 98.72 100.00 98.70 99.42 100.00 100.00 100.00 100.00 100.00 100.00 99.48 100.00 99.33 100.00 100.00 100.00 99.25 100.00 100.00 98.98 K cassette Tsp42Ee,RI_chr2R_2904593_2904783 chr2R + chr2R_2899841_2904517 chr2R_2899841_2900537;chr2R_2900622_2904517 chr2R_2900538_2900621 chr2R_2899753_2899840;chr2R_2904518_2904592 99.56 99.33 99.64 99.70 99.51 99.37 98.10 99.62 99.67 97.03 98.69 99.85 99.88 99.90 99.21 99.62 99.56 99.75 99.48 99.92 99.51 97.95 99.70 99.49 99.33 99.36 98.60 97.18 96.24 99.42 99.65 99.43 99.63 99.82 99.42 99.09 99.72 99.67 99.59 99.54 98.85 99.78 99.88 99.32 98.66 99.52 99.75 99.58 99.62 99.55 99.89 99.82 99.68 99.82 99.76 99.86 99.54 99.43 K jcn_only_AD None chrU - chrU_4029374_4029432;chrU_4029374_4029489 chrU_4029374_4029436 0.35 2.88 0.00 0.00 1.27 0.00 0.76 0.41 0.79 0.56 0.00 0.82 0.00 0.00 0.00 1.02 1.55 1.60 0.00 1.00 0.90 1.13 0.34 0.00 0.00 0.00 0.55 0.00 1.34 0.00 0.75 1.05 0.00 0.00 0.99 0.72 0.33 0.55 0.49 0.35 1.23 0.00 0.00 0.00 1.10 0.00 0.00 0.70 0.00 0.00 0.00 1.55 0.00 0.00 0.68 0.00 0.66 0.74 K jcn_only_AD CG3760,CG3770,CG12851 chr2R + chr2R_20826197_20826282 chr2R_20826218_20826282 chr2R_20826283_20826365;chr2R_20825910_20826196 0.34 0.00 1.47 0.54 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.39 1.04 0.68 1.87 0.00 0.76 0.00 0.00 1.26 0.00 2.54 0.00 0.92 0.00 0.68 1.38 0.00 2.80 0.00 0.00 0.00 0.35 0.00 0.67 0.83 0.49 0.00 0.90 0.75 0.00 0.62 0.00 0.00 0.39 0.40 0.54 0.00 0.00 0.34 0.00 0.00 0.91 0.96 0.00 0.00 0.41 0.70 K alternative_donor CG9795,I_chr3R_151216_151418 chr3R + chr3R_151184_151418;chr3R_151216_151418;chr3R_151212_151418 chr3R_151180_151418 chr3R_151419_151518;chr3R_151116_151179 5.56 0.00 0.00 4.76 0.00 10.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 8.33 7.69 5.56 9.09 11.11 11.11 5.00 0.00 0.00 5.56 5.56 0.00 12.50 0.00 0.00 14.29 0.00 6.67 11.11 12.50 0.00 0.00 0.00 13.33 10.00 6.67 8.33 0.00 0.00 0.00 7.14 10.00 8.33 6.25 0.00 5.56 16.13 7.69 0.00 0.00 0.00 8.33 7.69 0.00 7.69 K intron_retention Snx6,RI_chr2L_8218680_8218853,I_chr2L_8230332_8238998 chr2L - chr2L_8218505_8218569 chr2L_8218504_8218505;chr2L_8218569_8218570 chr2L_8218009_8218504;chr2L_8218570_8218679 0.00 0.00 0.00 0.62 0.00 0.00 0.32 0.59 0.46 0.00 0.52 0.59 0.00 1.26 0.89 1.36 0.56 0.55 0.00 0.97 0.00 0.58 0.00 0.00 0.00 0.00 2.67 1.88 0.39 0.00 0.45 0.72 0.00 0.66 0.00 0.43 0.00 0.00 0.00 0.49 0.42 0.96 0.00 0.00 0.00 0.67 0.29 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.22 0.00 K intron_retention UbcD6,RI_chr3R_776749_776832 chr3R - chr3R_776749_776832 chr3R_776748_776749;chr3R_776832_776833 chr3R_776649_776748;chr3R_776833_776932 37.50 NA 41.67 33.33 NA 25.00 46.67 35.00 40.74 NA NA 37.50 NA 36.36 NA 62.50 NA 36.36 50.00 50.00 NA 35.29 37.50 36.36 NA 58.33 47.06 57.69 55.00 41.67 30.77 NA 60.00 29.17 28.57 33.33 30.77 28.57 35.29 40.00 NA 25.93 NA 35.71 NA 26.32 33.33 43.75 43.48 26.92 36.36 41.67 NA NA 38.46 40.00 38.10 54.55 K intron_retention Dhc64C chr3L - chr3L_4811670_4812893 chr3L_4811669_4811670;chr3L_4812893_4812894 chr3L_4811552_4811669;chr3L_4812894_4812959 2.78 0.00 10.00 16.33 0.00 0.00 10.00 5.97 2.56 0.00 19.05 5.13 2.78 0.00 5.41 0.00 0.00 7.14 3.45 7.25 5.56 0.00 4.88 0.00 0.00 4.17 3.45 35.71 0.00 0.00 5.26 10.00 14.29 5.26 0.00 6.67 1.59 NA 3.33 11.29 0.00 4.35 0.00 0.00 NA 0.00 0.00 27.27 8.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 5.56 K mutually_exclusive shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9758202_9758798,chr2R_9758844_9759483 chr2R_9758202_9758344,chr2R_9758417_9759483 chr2R_9758799_9758843 chr2R_9758345_9758416 chr2R_9758027_9758201;chr2R_9759484_9759658 14.29 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA 33.33 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA K alternative_acceptor msn,RI_chr3L_2557071_2557135,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2557071_2557135 chr3L_2557077_2557135 chr3L_2557136_2557235;chr3L_2556971_2557070 99.43 98.47 99.03 99.64 99.42 98.11 99.69 99.36 99.79 98.92 99.40 99.64 99.39 99.45 99.01 99.62 99.43 99.46 98.04 99.75 99.37 99.40 99.25 100.00 99.32 99.38 99.63 97.22 100.00 99.38 98.94 100.00 98.35 99.66 100.00 100.00 99.60 99.40 99.20 99.63 100.00 99.72 100.00 99.55 97.67 99.26 99.39 100.00 99.09 100.00 99.66 100.00 98.96 99.21 100.00 100.00 99.47 98.84 N jcn_only_AD CG1115,F_chr3R_1052705_1053045 chr3R + chr3R_1052705_1053045;chr3R_1052701_1053045 chr3R_1052718_1053045 chr3R_1053046_1053145;chr3R_1052605_1052700 25.73 28.36 0.00 27.08 0.00 NA 27.14 24.14 28.75 37.93 NA 31.25 0.00 36.36 0.00 36.84 47.83 0.00 0.00 32.79 0.00 0.00 27.69 22.22 0.00 0.00 29.69 0.00 0.00 0.00 0.00 0.00 0.00 27.59 42.11 0.00 25.71 32.00 24.14 28.57 0.00 26.09 0.00 27.94 0.00 23.53 30.43 NA 36.59 35.00 31.08 30.56 28.81 32.05 0.00 25.76 26.17 0.00 K jcn_only_AD RpL27A,E_chr2L_4457411_4457977,I_chr2L_4458058_4458120 chr2L - chr2L_4458058_4458288;chr2L_4458058_4458274;chr2L_4458058_4458140 chr2L_4458058_4458162 chr2L_4457978_4458057;chr2L_4458289_4458357 16.92 22.06 3.59 1.75 4.33 4.22 10.94 1.55 7.30 23.23 4.73 9.89 4.90 14.95 1.84 6.71 3.04 9.78 2.67 5.37 4.73 14.50 42.34 31.33 32.09 4.28 43.46 29.60 49.83 37.28 26.43 13.54 16.92 3.04 38.41 43.08 37.86 44.21 41.37 37.22 32.87 3.03 3.72 37.61 10.35 30.95 36.82 26.53 7.49 31.06 48.39 22.94 25.00 58.91 3.07 43.09 18.83 16.44 K intron_retention CG10194,RI_chr2L_19489213_19489295 chr2L - chr2L_19489213_19489299 chr2L_19489212_19489213;chr2L_19489299_19489300 chr2L_19489113_19489212;chr2L_19489300_19489395 0.00 NA NA 0.00 NA NA 0.00 NA 7.14 NA NA 0.00 NA NA NA NA NA NA NA 16.67 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 7.14 NA NA NA NA NA 0.00 NA 0.00 0.00 NA 0.00 NA 10.00 NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 7.69 NA K alternative_donor Mef2,CREFI_chr2R_5809509_5845628,I_chr2R_5809697_5816404,I_chr2R_5814375_5816404,I_chr2R_5821883_5821953,RI_chr2R_5846889_5846948 chr2R - chr2R_5809509_5828440 chr2R_5809509_5828249 chr2R_5809499_5809508;chr2R_5828441_5828458 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 87.50 100.00 NA NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 K intron_retention stmA chr2R - chr2R_4620386_4620806 chr2R_4620385_4620386;chr2R_4620806_4620807 chr2R_4620181_4620385;chr2R_4620807_4621000 0.00 3.57 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 5.26 0.00 5.08 NA 6.82 2.78 4.76 4.35 0.00 0.00 0.00 8.70 0.00 5.56 0.00 0.00 0.00 6.67 13.51 3.64 4.65 4.65 4.65 NA 0.00 0.00 4.00 NA 0.00 0.00 0.00 0.00 3.85 6.56 0.00 3.85 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14995,I_chr3L_4095875_4097205,I_chr3L_4096047_4096903 chr3L - chr3L_4097335_4097506 chr3L_4097334_4097335;chr3L_4097506_4097507 chr3L_4097256_4097334;chr3L_4097507_4097804 40.00 NA NA NA NA NA NA NA 54.55 NA NA 40.00 NA NA NA NA NA NA NA 66.67 NA 34.38 NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA 26.67 30.77 50.00 41.67 NA NA NA NA NA NA NA NA NA 38.46 66.67 NA NA NA NA NA NA NA K intron_retention Dgkepsilon chr2R + chr2R_8645409_8645466 chr2R_8645408_8645409;chr2R_8645466_8645467 chr2R_8645143_8645408;chr2R_8645467_8646474 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.51 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention xl6,RI_chr2L_6915398_6919523,I_chr2L_6915401_6919697,nop5,psnoRNA:nop_x16-a chr2L - chr2L_6917163_6917340 chr2L_6917162_6917163;chr2L_6917340_6917341 chr2L_6916882_6917162;chr2L_6917341_6918589 0.00 0.00 0.00 2.16 0.00 0.00 0.00 1.50 0.84 0.00 0.00 0.89 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.71 1.53 0.00 0.91 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.91 1.03 0.00 0.00 0.00 1.16 0.40 0.00 1.56 0.00 0.34 0.00 0.21 0.00 0.85 0.36 0.33 0.91 K intron_retention CG4078,I_chrX_5645012_5645067,F_chrX_5650884_5651894 chrX + chrX_5645307_5645374 chrX_5645306_5645307;chrX_5645374_5645375 chrX_5645097_5645306;chrX_5645375_5646090 0.00 0.00 NA 20.00 NA NA NA 12.50 15.38 NA NA 14.29 NA NA NA 14.29 NA 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA 0.00 NA 4.76 NA NA NA 0.00 0.00 0.00 NA 15.00 NA NA 0.00 0.00 NA 0.00 16.67 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AA hppy,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15108288_15111557 chr2R_15108288_15110744 chr2R_15108271_15108287;chr2R_15111558_15111891 19.62 NA NA 29.41 NA NA NA NA 20.83 NA NA NA NA NA NA NA NA NA NA 3.33 NA NA NA NA NA NA NA NA 17.39 NA NA NA 47.62 20.00 NA NA NA NA NA 8.70 NA 19.23 NA NA NA NA NA NA 20.69 NA 4.35 NA NA NA NA NA NA NA K cassette Magi,I_chr2R_17020420_17029043,I_chr2R_17026738_17027105,I_chr2R_17026738_17029359 chr2R - chr2R_17020420_17029043 chr2R_17020420_17025730;chr2R_17026738_17029043 chr2R_17025731_17026737 chr2R_17020320_17020419;chr2R_17029044_17029143 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.85 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.55 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention unc-13,I_chr4_897821_902468,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_899619_902468 chr4_899618_899619;chr4_902468_902469 chr4_899519_899618;chr4_902469_902478 100.00 90.00 100.00 100.00 100.00 100.00 97.30 100.00 94.59 NA 100.00 95.45 100.00 94.44 93.75 100.00 100.00 100.00 100.00 100.00 100.00 90.91 93.33 90.00 100.00 100.00 95.24 100.00 NA 100.00 94.44 NA 100.00 94.12 100.00 NA 90.91 NA 100.00 100.00 NA 100.00 100.00 86.67 NA 88.89 NA 100.00 97.14 100.00 94.12 88.89 NA NA 100.00 100.00 NA NA K jcn_only_AD Dbp45A chr2R + chr2R_4975487_4975546 chr2R_4975492_4975546 chr2R_4975547_4976088;chr2R_4975391_4975486 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.80 100.00 97.73 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.63 100.00 100.00 100.00 98.55 100.00 100.00 98.55 100.00 100.00 98.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG6439,RI_chr3R_17844601_17844713 chr3R - chr3R_17844550_17844713 chr3R_17844601_17844713 chr3R_17844714_17844813;chr3R_17844502_17844549 1.34 0.00 1.33 2.78 0.00 4.48 5.95 2.70 1.34 1.20 0.00 2.33 2.86 1.59 1.05 1.00 4.08 1.67 1.69 1.03 0.00 12.70 0.96 3.41 0.00 0.00 1.45 0.00 2.41 2.67 3.03 1.14 0.00 1.98 0.00 1.37 0.00 2.47 0.00 0.66 4.30 0.85 1.96 1.15 3.03 0.81 1.92 2.81 1.00 2.38 0.93 4.35 0.00 1.52 1.72 0.00 0.00 0.00 K jcn_only_AA CG5720 chr3R - chr3R_20141243_20141313 chr3R_20141252_20141313 chr3R_20141314_20143563;chr3R_20140982_20141242 100.00 100.00 100.00 98.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.65 98.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG6962 chr3R - chr3R_7705797_7705859 chr3R_7705805_7705859 chr3R_7705860_7706117;chr3R_7705437_7705796 100.00 100.00 100.00 93.75 87.50 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 94.44 87.50 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 NA NA NA NA 100.00 100.00 NA 94.74 NA NA NA 87.50 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA K intron_retention dwg,RI_chrX_2622297_2622355,RI_chrX_2622297_2622430,RI_chrX_2622435_2622577,RI_chrX_2627170_2627263 chrX + chrX_2622297_2622430 chrX_2622296_2622297;chrX_2622430_2622431 chrX_2622197_2622296;chrX_2622431_2622434 61.54 NA NA 63.64 NA NA NA NA 84.62 NA NA NA NA NA NA 66.67 NA NA NA 69.23 NA 40.00 NA NA NA NA 46.15 NA NA NA 32.35 NA 60.00 88.89 NA 43.75 NA NA 64.29 61.54 66.67 60.00 NA NA NA 53.85 88.89 NA 66.67 NA 61.54 NA NA 60.00 NA NA NA NA K alternative_donor Cf2 chr2L - chr2L_4879197_4880377 chr2L_4879197_4880293 chr2L_4878850_4879196;chr2L_4880378_4880472 12.00 13.79 23.08 11.11 8.33 6.90 30.77 10.00 10.17 NA 8.33 6.25 33.33 13.04 4.00 18.52 5.88 7.41 31.82 10.29 22.22 8.16 10.81 25.00 23.81 13.33 16.13 8.33 9.09 12.00 27.27 27.27 10.53 17.65 9.52 20.00 12.73 13.04 11.90 4.17 25.00 12.00 9.09 8.57 8.33 15.38 27.78 11.76 16.95 17.39 12.90 11.76 NA NA 9.68 12.00 26.09 26.32 K intron_retention CG8209 chr3L + chr3L_7969675_7969767 chr3L_7969674_7969675;chr3L_7969767_7969768 chr3L_7969403_7969674;chr3L_7969768_7970370 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RI_chr3R_7061265_7061322,CG31441,CG31388 chr3R + chr3R_7062215_7062271;chr3R_7062207_7062271 chr3R_7062211_7062271 chr3R_7062272_7063062;chr3R_7062165_7062206 66.67 NA NA 71.43 NA NA 62.50 100.00 63.64 NA NA 66.67 NA NA NA 75.00 NA NA NA 83.33 NA NA NA NA NA NA NA NA NA NA 31.25 NA NA 71.43 NA NA NA NA NA NA NA 71.43 NA NA NA NA 55.56 NA 66.67 NA NA NA NA NA 55.56 NA 63.64 NA K cassette F_chrX_15764251_15765393,CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15764432_15765891;chrX_15764522_15765891 chrX_15764432_15765393,chrX_15764522_15765393;chrX_15765557_15765891 chrX_15765394_15765556 chrX_15764292_15764431;chrX_15765892_15766002 100.00 100.00 90.91 100.00 100.00 87.50 95.24 95.45 92.31 NA 100.00 93.33 92.31 92.31 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 87.50 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA 85.71 95.45 100.00 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 96.15 88.89 100.00 100.00 NA NA 100.00 NA 100.00 100.00 K jcn_only_AD RpL15 chr3LHet + chr3LHet_2398018_2398127;chr3LHet_2397859_2398127;chr3LHet_2397925_2398127;chr3LHet_2397992_2398127;chr3LHet_2398060_2398127;chr3LHet_2397841_2398127;chr3LHet_2397820_2398127;chr3LHet_2398053_2398127 chr3LHet_2398002_2398127 chr3LHet_2398128_2398454;chr3LHet_2397802_2397819 0.00 2.70 0.00 0.00 0.00 0.00 1.10 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.78 0.31 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 K intron_retention myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_715964_716581 chr4_715963_715964;chr4_716581_716582 chr4_715936_715963;chr4_716582_716582 100.00 100.00 100.00 97.83 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA K intron_retention CG17082,I_chr2R_632143_635290,R_chr2R_642176_644740,I_chr2R_644094_644145,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_632143_636726 chr2R_632142_632143;chr2R_636726_636727 chr2R_632135_632142;chr2R_636727_636891 16.41 NA NA 0.00 NA NA 21.05 5.56 26.32 NA NA NA NA NA NA 11.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA 23.53 NA NA NA NA NA NA NA NA NA N multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2813977;chr2R_2814097_2814174;chr2R_2814327_2814894;chr2R_2815657_2816013;chr2R_2816342_2816577;chr2R_2816779_2817753 chr2R_2813978_2814096;chr2R_2814175_2814326;chr2R_2814895_2815656;chr2R_2816014_2816341;chr2R_2816578_2816778 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9390151;chr2R_9389597_9389907;chr2R_9389597_9389940;chr2R_9389597_9390293;chr2R_9389597_9389751;chr2R_9389597_9390264;chr2R_9389597_9389753;chr2R_9389597_9389757 chr2R_9389597_9390195 chr2R_9389497_9389596;chr2R_9390294_9390295 77.12 80.65 69.77 70.59 58.70 66.67 77.12 63.06 65.62 90.24 68.18 64.91 73.61 72.55 74.70 79.13 66.67 76.92 71.28 60.26 69.33 78.18 82.08 79.45 77.97 69.86 95.77 96.36 79.63 95.59 69.41 77.50 65.12 73.33 91.67 94.85 86.67 81.08 83.33 81.73 76.00 68.12 75.61 89.06 76.32 83.61 87.06 56.86 70.15 93.44 90.28 76.92 83.58 97.22 60.71 88.33 90.48 84.21 K intron_retention Doa,I_chr3R_24715823_24718923,I_chr3R_24747391_24747896 chr3R + chr3R_24717714_24718923 chr3R_24717713_24717714;chr3R_24718923_24718924 chr3R_24717690_24717713;chr3R_24718924_24718971 20.00 20.00 NA 15.00 14.29 NA 25.00 16.67 21.21 NA NA 25.93 NA 20.00 14.29 37.50 25.00 NA 27.78 29.41 NA 29.41 12.24 7.14 23.08 19.05 20.00 NA NA NA 13.33 NA NA 27.78 25.00 31.03 12.50 10.00 6.25 7.69 15.38 19.23 30.77 20.00 NA 21.05 NA 13.04 28.57 NA 18.18 10.71 NA NA 27.59 NA 20.00 NA K alternative_donor CG7702 chr3R + chr3R_14495285_14496826 chr3R_14495421_14496826 chr3R_14496827_14497096;chr3R_14495114_14495284 100.00 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA NA K alternative_donor CG10602 chr2L - chr2L_18857404_18857587;chr2L_18857404_18857541 chr2L_18857404_18857511 chr2L_18857177_18857403;chr2L_18857588_18857700 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention Syx4,I_chrX_2635555_2635621,I_chrX_2636831_2636971 chrX - chrX_2635530_2635621 chrX_2635529_2635530;chrX_2635621_2635622 chrX_2635456_2635529;chrX_2635622_2635721 0.00 0.00 0.00 0.00 0.00 0.00 4.76 3.23 5.63 NA 4.55 0.00 0.00 5.13 2.86 6.00 2.94 0.00 0.00 4.00 0.00 4.35 0.00 6.90 NA 8.33 0.00 NA NA 0.00 4.44 6.67 0.00 5.66 0.00 NA 6.90 0.00 0.00 0.00 0.00 2.94 4.76 0.00 0.00 1.92 0.00 2.63 3.03 0.00 0.00 8.70 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention deltaCOP,I_chrX_1754047_1754089,I_chrX_1755132_1755191,E_chrX_1755139_1755188,I_chrX_1757755_1757801 chrX - chrX_1753847_1753903 chrX_1753846_1753847;chrX_1753903_1753904 chrX_1753186_1753846;chrX_1753904_1754015 0.00 0.00 0.30 0.25 0.00 0.00 0.28 0.47 0.35 0.00 0.93 0.78 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 1.25 1.19 0.00 0.33 0.00 0.30 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.36 0.00 0.00 0.19 0.20 0.00 0.00 0.00 0.22 0.23 0.00 0.00 0.00 0.00 0.53 0.00 0.00 K alternative_acceptor CG2118,I_chr3R_27618369_27618426,I_chr3R_27619193_27619598 chr3R - chr3R_27618369_27618426 chr3R_27618373_27618426 chr3R_27618427_27618526;chr3R_27618269_27618368 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 NA 87.50 93.75 100.00 100.00 100.00 90.00 100.00 100.00 100.00 95.45 100.00 NA 90.91 100.00 NA 100.00 91.67 NA NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 91.67 NA 100.00 90.91 100.00 87.50 91.67 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 85.71 NA NA K jcn_only_AD vlc chr2R + chr2R_1589953_1590371;chr2R_1589799_1590371;chr2R_1589805_1590371;chr2R_1590318_1590371;chr2R_1589807_1590371;chr2R_1590294_1590371;chr2R_1589722_1590371;chr2R_1589693_1590371 chr2R_1589894_1590371 chr2R_1590372_1590451;chr2R_1589612_1589692 9.62 10.91 10.14 8.57 3.64 4.08 14.43 11.90 4.24 20.00 11.11 8.20 9.46 5.41 15.28 9.92 8.51 4.76 14.06 5.84 15.09 17.14 8.33 7.58 9.09 15.00 14.67 3.23 30.00 5.66 9.52 8.33 16.95 7.97 6.38 9.62 16.67 8.77 5.71 18.29 10.00 11.36 8.22 11.27 19.35 20.37 4.55 25.93 5.00 12.50 5.88 10.91 5.26 8.82 12.50 7.50 10.14 30.43 K alternative_acceptor CG15609,I_chr2R_12898038_12898391,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12898038_12898391 chr2R_12898041_12898391 chr2R_12898392_12898481;chr2R_12897938_12898037 97.96 100.00 100.00 100.00 100.00 96.43 96.77 94.87 96.08 95.24 94.74 97.96 95.45 95.24 100.00 100.00 95.83 95.65 100.00 98.08 100.00 100.00 96.77 96.88 100.00 95.00 96.67 91.67 100.00 100.00 96.55 100.00 100.00 97.73 96.15 100.00 96.67 100.00 97.44 97.30 94.12 97.96 94.44 100.00 94.12 96.30 100.00 100.00 97.14 100.00 100.00 100.00 100.00 91.30 100.00 100.00 95.65 100.00 K intron_retention CG8908,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16156328_16156387 chr2R_16156327_16156328;chr2R_16156387_16156388 chr2R_16156099_16156327;chr2R_16156388_16156573 28.57 NA 15.38 NA NA NA 44.12 NA 14.29 NA NA 35.71 28.00 NA NA 26.00 NA NA NA 28.57 NA 14.29 33.33 30.77 NA NA NA 27.27 NA NA 28.57 NA NA NA NA NA NA NA NA 17.39 NA 36.84 NA NA 50.00 NA NA NA 36.84 NA NA NA NA NA 63.64 NA NA NA N multi_cassette AnnIX,I_chr3R_16895383_16895999 chr3R + chr3R_16893222_16896445 chr3R_16893222_16893790;chr3R_16894500_16894559;chr3R_16894742_16896445 chr3R_16893791_16894499;chr3R_16894560_16894741 chr3R_16893168_16893221;chr3R_16896446_16896495 100.00 100.00 100.00 94.66 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD RpL10Ab chr3L + chr3L_11816456_11816757;chr3L_11816530_11816757 chr3L_11816666_11816757 chr3L_11816758_11817314;chr3L_11816300_11816455 1.29 1.23 0.86 0.90 0.97 0.83 1.37 1.01 1.10 1.79 1.41 1.29 1.25 1.37 1.01 1.04 1.06 1.02 1.16 0.99 1.11 3.86 1.91 1.61 1.78 1.01 1.56 3.80 1.44 1.94 4.72 1.33 1.18 1.05 1.58 1.42 1.63 1.63 1.17 1.15 1.94 1.28 0.97 1.72 1.13 1.22 1.88 1.03 2.04 2.07 2.49 2.34 1.13 1.66 0.92 1.77 1.39 0.68 K alternative_donor sut1,I_chr2R_3970908_3972035,sut2 chr2R + chr2R_3970891_3972035 chr2R_3970908_3972035 chr2R_3972036_3972135;chr2R_3970808_3970890 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 K alternative_acceptor CG5646,I_chr3R_23386250_23386484,I_chr3R_23386287_23386484 chr3R - chr3R_23386250_23386484;chr3R_23386237_23386484;chr3R_23386287_23386484 chr3R_23386220_23386484 chr3R_23386485_23386584;chr3R_23386187_23386219 7.69 23.53 9.09 6.25 0.00 6.25 3.70 0.00 8.33 12.50 11.11 18.18 0.00 6.25 15.00 26.67 44.44 9.09 10.00 10.34 6.67 5.88 3.23 4.17 0.00 0.00 17.14 18.52 4.55 8.70 13.89 4.55 7.69 4.17 17.39 5.56 3.23 0.00 17.95 10.00 0.00 7.69 0.00 6.25 5.88 12.12 5.56 7.14 15.38 16.00 18.75 14.29 18.18 5.56 13.64 5.00 8.33 6.67 K jcn_only_AD scny,I_chr3L_5763034_5768288 chr3L + chr3L_5767947_5768288 chr3L_5768114_5768288 chr3L_5768289_5768388;chr3L_5767514_5767946 60.87 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.87 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17389985_17398371;chr2R_17395228_17398371;chr2R_17389811_17398371 chr2R_17389985_17397622,chr2R_17389811_17397622,chr2R_17395228_17397622;chr2R_17397707_17398371 chr2R_17397623_17397706 chr2R_17389782_17389810;chr2R_17398372_17398565 97.87 96.30 97.67 100.00 94.44 97.37 100.00 100.00 95.35 97.50 100.00 100.00 100.00 100.00 100.00 97.22 100.00 97.78 96.30 97.53 96.67 95.61 98.75 95.06 98.15 96.55 98.51 98.59 88.71 97.87 100.00 96.77 97.92 98.25 97.67 88.14 96.33 93.75 97.00 96.00 96.30 98.70 96.00 98.15 92.50 98.00 100.00 96.97 100.00 100.00 100.00 96.88 97.67 98.15 100.00 98.15 98.73 100.00 K alternative_acceptor I_chr3R_17191403_17191730,noncoding_18164 chr3R + chr3R_17191403_17191730 chr3R_17191403_17191725 chr3R_17191372_17191402;chr3R_17191731_17191830 89.20 NA NA 87.50 NA NA 90.91 NA 81.82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.95 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG33298 chr2L + chr2L_9517462_9517530 chr2L_9517461_9517462;chr2L_9517530_9517531 chr2L_9517130_9517461;chr2L_9517531_9517903 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11198 chr2R - chr2R_3872508_3872570 chr2R_3872507_3872508;chr2R_3872570_3872571 chr2R_3872386_3872507;chr2R_3872571_3872956 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 9.00 0.00 0.00 0.00 1.39 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4984610_4984712 chr2L_4984636_4984712 chr2L_4984713_4984812;chr2L_4984536_4984609 3.57 0.00 3.57 2.53 0.00 2.13 7.81 3.57 3.03 5.26 10.00 3.12 8.33 2.33 1.75 1.52 2.94 2.63 4.17 1.03 2.94 12.77 3.33 0.00 6.98 6.82 4.48 4.88 10.91 3.57 7.14 4.17 3.77 1.28 2.56 0.00 5.00 3.57 1.25 1.69 3.12 2.04 4.00 3.28 6.67 5.56 2.94 6.00 4.76 12.00 3.77 0.00 0.00 4.55 2.94 4.17 0.00 9.09 K alternative_donor CG33558,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2816779_2817354;chr2R_2816779_2817459 chr2R_2816779_2817327 chr2R_2816679_2816778;chr2R_2817460_2817510 93.48 90.91 96.77 97.37 81.25 93.75 95.24 77.78 92.31 91.89 100.00 91.67 84.62 86.96 88.57 86.36 100.00 94.12 96.00 93.65 95.65 98.08 98.65 93.65 97.37 92.86 85.42 91.67 94.29 92.96 95.65 90.32 92.19 97.83 95.35 91.11 93.69 98.15 95.74 87.65 86.49 98.33 90.00 93.48 95.59 92.42 94.59 92.45 91.30 95.70 98.00 92.31 92.50 91.38 87.10 98.39 97.14 93.33 K jcn_only_AD Thor,I_chr2L_3479106_3479184 chr2L + chr2L_3478761_3479184 chr2L_3479106_3479184 chr2L_3479185_3479284;chr2L_3478359_3478760 0.13 0.19 0.20 0.18 0.00 0.41 0.41 0.00 0.27 0.00 0.00 0.00 0.00 0.25 0.39 0.00 0.00 0.25 0.24 0.00 0.00 0.39 0.13 0.00 0.00 0.20 0.00 0.45 0.20 0.00 0.21 0.00 0.00 0.17 0.20 0.23 0.00 0.19 0.14 0.13 0.35 0.12 0.31 0.00 0.00 0.00 0.13 0.00 0.35 0.00 0.00 0.31 0.00 0.00 0.19 0.19 0.00 0.00 K alternative_donor CG9836,I_chr3R_4654041_4664113,I_chr3R_4749124_4756437 chr3R - chr3R_4648792_4648970;chr3R_4648792_4648982 chr3R_4648792_4648989 chr3R_4648564_4648791;chr3R_4648990_4649023 3.33 6.06 1.56 3.64 3.33 1.96 2.87 4.80 5.56 2.38 6.67 3.96 0.00 3.85 1.75 4.04 1.85 3.92 5.48 7.74 2.22 1.72 3.70 4.55 1.85 3.39 6.25 5.88 4.82 2.94 3.48 2.78 0.00 2.52 6.25 4.94 1.39 1.85 1.59 0.00 4.21 3.57 1.96 1.30 3.95 0.83 6.72 1.85 3.51 4.39 4.71 1.72 3.03 1.20 4.17 1.01 0.75 3.09 K alternative_donor CG12050,I_chr2L_21095413_21095474,RI_chr2L_21095413_21095659 chr2L - chr2L_21095413_21099036 chr2L_21095413_21095659 chr2L_21095313_21095412;chr2L_21099037_21099407 2.27 3.28 1.52 3.45 1.56 1.89 2.27 2.70 2.40 2.94 2.33 2.80 1.64 3.64 1.47 3.19 4.08 1.54 2.60 2.54 2.17 2.53 2.30 1.16 2.00 2.08 2.27 6.45 2.27 2.33 2.08 1.96 1.14 3.00 2.38 2.38 1.03 1.43 1.98 2.38 4.08 2.14 4.08 4.48 1.12 3.08 2.99 3.92 4.12 1.94 1.83 2.27 1.37 2.13 1.27 3.03 1.56 2.08 K cassette Tif-IA,RI_chr2L_22250854_22257652 chr2L + chr2L_22250854_22257652 chr2L_22250854_22253745;chr2L_22253922_22257652 chr2L_22253746_22253921 chr2L_22250754_22250853;chr2L_22257653_22257752 96.39 94.44 94.12 71.24 98.41 94.12 94.85 99.40 94.05 100.00 100.00 96.38 88.46 96.39 95.12 95.33 95.40 88.89 94.59 99.28 100.00 98.11 98.61 94.94 88.64 77.53 97.50 100.00 74.47 96.97 96.36 98.55 94.20 97.44 98.28 96.43 97.83 96.00 97.92 96.49 95.00 98.14 92.50 88.75 98.57 98.41 100.00 95.50 96.09 98.55 98.75 95.65 97.50 98.08 97.17 100.00 95.70 95.95 K intron_retention CG1908 chrX + chrX_11043994_11044668 chrX_11043993_11043994;chrX_11044668_11044669 chrX_11043958_11043993;chrX_11044669_11046160 10.26 12.12 14.81 19.35 3.85 0.00 13.51 13.33 16.07 10.00 NA 28.12 5.88 21.05 10.00 13.64 13.04 NA 24.00 17.07 10.53 12.12 9.09 5.71 12.50 0.00 17.86 29.17 12.12 5.00 12.50 0.00 10.71 2.70 10.53 NA 5.88 5.71 5.66 5.41 NA 11.63 7.14 10.26 0.00 0.00 0.00 NA 4.65 8.62 11.11 9.09 5.56 NA 17.24 7.69 11.76 8.33 K alternative_acceptor CG12404,I_chr2L_12995561_12997461 chr2L - chr2L_12994238_12997461 chr2L_12995561_12997461 chr2L_12997462_12997561;chr2L_12994138_12994237 0.60 0.00 0.78 1.05 0.83 0.81 0.60 1.16 0.69 0.97 0.00 0.44 0.85 1.09 0.68 1.69 0.00 0.91 0.78 0.71 0.78 0.52 0.50 0.50 0.72 0.00 0.46 1.49 0.65 0.00 0.79 1.12 0.75 0.57 0.00 0.78 0.00 0.00 0.40 0.88 0.72 0.37 0.00 0.00 0.55 0.50 0.50 0.84 1.04 0.42 0.60 0.00 0.00 0.00 0.76 0.52 0.00 0.61 K intron_retention unc-13,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_923209_923451 chr4_923208_923209;chr4_923451_923452 chr4_919019_923208;chr4_923452_923908 37.04 40.00 33.33 70.59 41.18 35.71 18.60 50.70 38.54 23.53 40.00 47.46 28.12 42.42 36.36 53.49 36.36 42.11 47.62 38.03 36.36 24.31 37.70 34.62 28.57 44.68 38.46 39.02 28.57 17.39 51.11 NA 18.92 42.86 36.36 45.00 37.21 31.58 36.00 20.59 NA 40.62 37.93 36.36 NA NA NA 30.77 37.04 20.00 33.33 37.04 NA NA 34.38 NA NA NA K jcn_only_AA CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3017869_3017958 chr2L_3017904_3017958 chr2L_3017959_3018017;chr2L_3017812_3017868 100.00 100.00 100.00 99.01 100.00 100.00 95.33 100.00 99.45 100.00 100.00 99.22 97.73 100.00 100.00 100.00 100.00 100.00 98.10 99.30 100.00 100.00 100.00 100.00 100.00 100.00 98.31 NA NA 100.00 99.50 100.00 98.57 100.00 100.00 96.88 100.00 100.00 95.92 98.88 100.00 100.00 100.00 100.00 100.00 100.00 98.08 98.15 100.00 97.96 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K alternative_donor Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046104;chr3L_16045277_16046104;chr3L_16045275_16046104 chr3L_16045316_16046104 chr3L_16046105_16046204;chr3L_16045216_16045250 4.45 6.45 7.50 4.05 4.35 2.27 3.85 6.25 4.00 4.55 6.90 2.70 6.67 4.08 4.17 4.69 2.70 7.69 5.17 3.70 3.23 10.53 3.70 5.88 7.14 7.02 8.51 10.00 4.76 1.89 3.77 0.00 5.00 5.56 2.94 10.81 3.85 7.14 9.38 3.12 3.45 5.68 4.65 7.50 0.00 3.03 0.00 2.60 7.89 0.00 5.13 6.25 0.00 NA 5.08 4.17 0.00 0.00 K intron_retention CG15814,I_chrX_17743744_17743940 chrX - chrX_17744102_17744321 chrX_17744101_17744102;chrX_17744321_17744322 chrX_17743941_17744101;chrX_17744322_17744390 50.00 57.14 58.33 57.14 56.14 46.34 77.05 66.10 52.67 47.62 59.65 57.35 57.58 48.72 55.77 61.22 58.00 61.54 63.16 50.81 50.98 48.39 44.12 49.23 48.84 64.10 62.79 47.06 61.76 44.44 58.73 45.95 40.48 65.00 36.00 54.05 42.73 45.90 40.85 44.23 38.89 52.21 62.22 48.57 42.31 45.10 48.98 50.00 51.96 55.88 45.24 45.45 38.46 50.00 46.15 44.44 52.08 33.77 K jcn_only_AA Trap1 chr2R - chr2R_2521454_2521515;chr2R_2521438_2521515 chr2R_2521435_2521515 chr2R_2521516_2521564;chr2R_2521152_2521434 0.00 0.00 0.00 0.00 1.11 1.23 0.00 0.60 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.87 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 1.12 0.88 0.00 0.76 0.00 0.00 0.00 0.70 0.00 0.00 0.00 1.05 0.00 0.00 0.00 K intron_retention LanA,I_chr3L_6208090_6208194 chr3L - chr3L_6204237_6204297 chr3L_6204236_6204237;chr3L_6204297_6204298 chr3L_6202336_6204236;chr3L_6204298_6204578 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor dlp chr3L + chr3L_14663174_14663275 chr3L_14663174_14663272 chr3L_14663084_14663173;chr3L_14663276_14663347 100.00 NA NA 100.00 NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 91.67 100.00 NA 100.00 100.00 100.00 100.00 NA NA 92.86 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 NA 100.00 NA 88.89 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA K alternative_donor exd chrX + chrX_15887147_15887504;chrX_15886884_15887504;chrX_15886821_15887504;chrX_15886888_15887504;chrX_15886827_15887504;chrX_15886802_15887504;chrX_15887006_15887504 chrX_15886958_15887504 chrX_15887505_15887806;chrX_15886739_15886801 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention CG8230 chr2R - chr2R_4834555_4834633 chr2R_4834554_4834555;chr2R_4834633_4834634 chr2R_4833369_4834554;chr2R_4834634_4834847 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.56 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Src42A,RI_chr2R_1897007_1897302,RI_chr2R_1897330_1897883 chr2R + chr2R_1897007_1897883 chr2R_1897006_1897007;chr2R_1897883_1897884 chr2R_1896928_1897006;chr2R_1897884_1897983 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.90 0.00 0.00 1.16 0.00 0.00 0.00 0.70 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpS18,CG8908,EI_chr2R_16151918_16151997,I_chr2R_16151918_16152036,I_chr2R_16151938_16152065,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151938_16152006 chr2R_16151937_16151938;chr2R_16152006_16152007 chr2R_16151852_16151937;chr2R_16152007_16152066 99.88 100.00 100.00 99.82 100.00 99.74 99.86 100.00 99.91 100.00 100.00 100.00 100.00 100.00 99.88 99.87 99.77 99.86 99.83 99.95 100.00 100.00 99.83 99.84 99.80 99.85 99.80 94.32 99.78 99.68 99.86 100.00 99.78 99.89 100.00 99.75 100.00 100.00 100.00 99.66 100.00 99.92 99.81 100.00 99.87 100.00 99.86 99.79 99.89 100.00 99.81 99.74 100.00 100.00 99.88 99.86 99.86 100.00 K alternative_last_exon Paip2,noncoding_16407,I_chr3R_8809774_8809832 chr3R + chr3R_8807110_8809456,chr3R_8807110_8809436 chr3R_8807110_8807189 chr3R_8809457_8809605 chr3R_8807190_8807627 chr3R_8807046_8807109 0.66 0.00 1.82 1.20 0.00 1.79 1.06 0.99 0.66 1.89 0.00 0.98 1.61 3.12 1.72 0.88 2.22 1.79 1.47 0.63 0.00 0.00 1.27 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 2.11 1.82 1.82 0.00 0.00 0.00 0.89 1.85 0.93 0.00 0.00 2.04 1.01 0.00 0.97 0.90 0.00 0.00 0.00 0.00 2.63 1.49 0.00 0.00 0.00 K intron_retention su(f),I_chrXHet_77570_78035 chrXHet + chrXHet_76550_76610 chrXHet_76549_76550;chrXHet_76610_76611 chrXHet_76315_76549;chrXHet_76611_76912 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG1407,RI_chr2R_5918919_5919093,I_chr2R_5918925_5919213,RI_chr2R_5918952_5919084,RI_chr2R_5918952_5919093 chr2R - chr2R_5918925_5919084 chr2R_5918952_5919084 chr2R_5919085_5919090;chr2R_5918852_5918924 81.60 83.33 73.44 74.07 85.48 84.48 70.83 81.03 86.32 85.71 79.49 89.87 96.92 82.05 88.52 79.55 78.48 79.63 74.19 74.83 83.87 85.11 79.31 83.67 77.78 84.62 74.12 70.83 72.00 71.43 75.76 NA 84.00 74.71 77.42 96.15 81.63 85.37 73.53 82.76 NA 81.58 82.61 92.68 88.46 78.12 82.50 82.61 81.30 87.50 75.00 78.79 69.57 86.21 83.15 86.67 78.85 NA K intron_retention RI_chrX_6482284_6482336,Pat1,I_chrX_6489999_6490050,APC7 chrX + chrX_6489505_6489568 chrX_6489504_6489505;chrX_6489568_6489569 chrX_6489347_6489504;chrX_6489569_6489993 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 K jcn_only_AA CG2064 chr2R + chr2R_3553522_3553619;chr2R_3553522_3553650 chr2R_3553522_3553627 chr2R_3553444_3553521;chr2R_3553651_3553914 0.70 0.46 1.69 1.43 0.00 0.47 0.82 0.81 0.32 1.69 0.00 0.66 0.64 1.09 0.90 1.46 2.40 1.22 0.45 0.40 0.00 1.28 0.67 0.57 2.56 0.37 0.85 1.39 0.58 0.49 2.09 1.42 0.49 0.28 0.86 0.70 1.93 0.00 0.00 1.29 0.85 0.24 0.00 0.44 1.80 1.16 1.43 1.71 0.96 0.32 1.05 0.56 0.52 0.84 0.00 1.62 0.23 0.40 K jcn_only_AD osa,I_chr3R_13542657_13542834,I_chr3R_13542657_13543500,I_chr3R_13542657_13543662,I_chr3R_13542657_13543668,I_chr3R_13543730_13543786 chr3R - chr3R_13542657_13543968;chr3R_13542657_13543500;chr3R_13542657_13543662;chr3R_13542657_13542834;chr3R_13542657_13543677 chr3R_13542657_13543668 chr3R_13542557_13542656;chr3R_13543969_13544017 2.35 0.00 2.35 5.80 1.41 3.39 2.82 4.58 3.18 1.47 0.00 1.16 1.67 2.02 2.25 0.94 2.46 1.23 0.00 2.50 0.00 3.57 2.25 2.38 0.00 2.74 0.00 2.60 5.08 3.15 2.94 8.33 4.70 3.83 2.82 5.22 1.83 3.75 2.22 2.59 7.89 0.60 0.00 2.36 7.69 4.08 3.03 1.72 1.52 4.65 5.59 1.37 0.00 0.00 0.93 0.00 0.00 2.33 K intron_retention CG12734,I_chr3L_3183812_3183932,I_chr3L_3184645_3185360 chr3L + chr3L_3183998_3184248 chr3L_3183997_3183998;chr3L_3184248_3184249 chr3L_3183933_3183997;chr3L_3184249_3185272 92.86 100.00 NA 93.33 NA NA 90.91 92.31 93.75 NA NA 89.47 NA 100.00 NA 100.00 NA NA 100.00 100.00 NA 100.00 92.31 92.86 91.67 NA 100.00 90.91 91.67 100.00 NA 88.89 92.86 100.00 88.24 90.91 88.89 90.91 95.24 81.82 NA 100.00 NA 90.00 76.92 92.31 93.75 81.25 93.75 100.00 95.45 100.00 90.00 100.00 NA 88.89 88.89 NA K intron_retention bai chr3R + chr3R_20865352_20865422 chr3R_20865351_20865352;chr3R_20865422_20865423 chr3R_20865115_20865351;chr3R_20865423_20865543 0.35 0.00 0.00 0.27 0.00 0.00 0.35 0.00 0.60 0.00 0.27 0.37 0.00 1.06 0.41 0.67 0.00 0.50 0.46 0.37 0.26 0.27 0.77 0.39 0.61 1.13 0.77 0.49 1.99 0.41 1.20 0.22 0.13 0.17 0.00 0.53 1.15 0.46 0.28 0.17 0.44 0.24 0.00 0.41 0.15 0.35 0.42 0.00 0.00 0.53 0.21 0.65 0.00 1.14 0.00 1.34 0.27 0.00 N jcn_only_AA Nca,CG7646 chr3L + chr3L_19986423_19988473;chr3L_19986423_19986483;chr3L_19986423_19989780 chr3L_19986423_19987267 chr3L_19986365_19986422 0.00 NA 0.00 14.08 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG13771 chr2L - chr2L_6663068_6663123;chr2L_6663068_6663127 chr2L_6663068_6663131 chr2L_6662854_6663067;chr2L_6663132_6663374 72.03 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 70.00 NA NA 61.29 NA NA NA NA NA 74.07 NA 80.00 NA NA NA NA NA NA NA NA NA NA K intron_retention CG33082,CG14630 chrX + chrX_926144_926455 chrX_926143_926144;chrX_926455_926456 chrX_925560_926143;chrX_926456_927151 3.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG17082,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_645254_645312;chr2R_645254_645306 chr2R_645254_645316 chr2R_645185_645253;chr2R_645317_645382 7.14 14.29 0.00 5.56 10.00 8.33 3.12 6.45 8.82 12.50 7.69 12.90 5.88 23.53 5.56 9.09 6.25 0.00 10.53 8.00 15.38 NA 0.00 5.00 0.00 6.25 0.00 11.11 0.00 9.09 10.00 14.29 0.00 5.88 7.69 9.09 10.00 11.11 0.00 4.76 7.14 2.86 5.56 28.57 8.33 5.00 11.11 10.00 5.56 4.17 6.25 18.18 0.00 0.00 13.79 8.33 4.55 7.14 K cassette pgant5,I_chr2L_5079575_5093241 chr2L - chr2L_5079575_5093444 chr2L_5079575_5092874;chr2L_5092899_5093444 chr2L_5092875_5092898 chr2L_5079475_5079574;chr2L_5093445_5093575 37.50 50.00 25.00 36.84 NA 40.00 36.36 36.36 41.86 36.36 27.27 48.00 45.45 39.13 37.50 43.59 25.00 50.00 43.48 37.50 25.00 NA 31.25 50.00 NA NA 40.00 NA NA NA 29.41 NA NA 35.48 NA NA 33.33 36.36 NA 36.36 NA 45.45 50.00 35.71 NA NA NA NA 53.85 NA 30.77 60.00 NA NA 40.00 NA NA NA K intron_retention exd chrX + chrX_15888639_15888717 chrX_15888638_15888639;chrX_15888717_15888718 chrX_15888380_15888638;chrX_15888718_15890040 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 1.68 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 1.19 1.68 2.04 0.00 0.00 0.00 0.00 1.35 0.00 2.17 1.01 0.00 0.00 1.02 0.00 0.00 0.71 0.00 0.91 0.00 K cassette CG7408 chr3L + chr3L_17872349_17873229 chr3L_17872349_17873076;chr3L_17873165_17873229 chr3L_17873077_17873164 chr3L_17872262_17872348;chr3L_17873230_17873397 89.44 NA NA 66.67 NA NA 85.71 90.00 100.00 NA NA 66.67 100.00 85.71 NA 92.31 NA 100.00 NA 88.89 NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA 100.00 NA NA NA NA NA 85.71 NA NA NA K intron_retention CG1965,I_chr3R_2902064_2902611 chr3R + chr3R_2893812_2894429 chr3R_2893811_2893812;chr3R_2894429_2894430 chr3R_2893510_2893811;chr3R_2894430_2894670 0.00 NA NA 3.33 NA NA 0.00 0.00 11.11 NA 0.00 9.52 NA NA 0.00 8.33 NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 5.26 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K cassette spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20343948_20345524 chr2L_20343948_20345172;chr2L_20345260_20345524 chr2L_20345173_20345259 chr2L_20343743_20343947;chr2L_20345525_20345670 41.18 37.50 53.57 20.00 47.06 39.13 41.38 44.00 38.89 31.25 26.09 40.91 41.18 64.71 59.09 87.50 63.16 60.00 40.91 48.72 30.43 42.86 38.24 43.90 46.43 63.64 55.26 15.79 32.14 37.93 64.71 50.00 40.00 60.00 38.24 37.50 41.82 37.50 38.00 45.95 40.00 45.10 35.71 57.69 50.00 30.77 50.00 30.00 53.85 30.43 48.72 38.10 40.00 39.13 50.00 40.91 46.15 30.00 K intron_retention CG6330 chr3R - chr3R_22777621_22778725 chr3R_22777620_22777621;chr3R_22778725_22778726 chr3R_22777497_22777620;chr3R_22778726_22778998 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11710 chrX - chrX_20298767_20298826 chrX_20298766_20298767;chrX_20298826_20298827 chrX_20298453_20298766;chrX_20298827_20299021 15.00 NA 12.50 26.92 NA NA 14.29 15.00 14.29 NA NA 13.04 NA NA NA 23.08 NA NA NA 18.52 NA 18.52 18.18 9.09 10.53 21.43 35.00 7.14 30.43 14.29 9.52 17.65 29.41 12.50 28.57 21.43 12.50 NA 21.05 18.52 30.00 11.76 NA 15.00 17.14 10.00 NA 15.38 21.74 14.29 0.00 16.67 26.67 6.25 14.29 14.29 7.69 4.35 K intron_retention CG34232,RI_chr2R_8057550_8061595 chr2R - chr2R_8052999_8053127 chr2R_8052998_8052999;chr2R_8053127_8053128 chr2R_8052572_8052998;chr2R_8053128_8053207 5.00 0.00 NA NA NA NA NA NA 12.00 0.00 NA 12.50 NA NA NA NA NA NA NA 9.09 NA 25.93 3.45 0.00 NA NA 9.52 NA 15.38 NA NA 15.00 4.76 NA 0.00 0.00 NA NA 5.00 3.03 0.00 14.29 NA 11.11 25.00 9.30 0.00 NA 5.56 NA 9.09 NA 4.00 0.00 NA 9.09 0.00 0.00 N jcn_only_AD Moe,I_chrX_8774434_8775874,I_chrX_8774434_8791759 chrX - chrX_8774434_8785766 chrX_8774434_8785594 chrX_8774334_8774433;chrX_8785767_8785791 100.00 99.14 100.00 100.00 100.00 100.00 100.00 100.00 99.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention mnb chrX - chrX_17758579_17763014 chrX_17758578_17758579;chrX_17763014_17763015 chrX_17756730_17758578;chrX_17763015_17763849 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 1.40 0.00 0.00 1.57 0.00 2.04 0.00 2.94 0.00 0.00 0.00 0.00 2.38 0.00 1.03 0.00 0.00 0.00 3.60 0.75 0.00 0.60 1.92 1.72 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.90 0.00 0.92 0.00 0.00 0.00 0.00 1.02 1.68 0.00 0.00 0.00 0.88 0.00 0.00 1.12 0.00 K intron_retention wdb,RI_chr3R_23406048_23407402 chr3R - chr3R_23391577_23391639 chr3R_23391576_23391577;chr3R_23391639_23391640 chr3R_23390516_23391576;chr3R_23391640_23391869 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.57 0.00 0.00 0.00 5.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17508,RI_chr2R_1496995_1497120,chr2R_1497138_1497448.0 chr2R + chr2R_1496995_1497120 chr2R_1496994_1496995;chr2R_1497120_1497121 chr2R_1496895_1496994;chr2R_1497121_1497127 92.86 90.00 100.00 97.30 NA 91.67 97.22 93.33 94.59 NA 88.89 92.59 93.75 92.86 92.31 95.65 90.91 NA 100.00 93.33 88.89 70.00 100.00 90.00 90.00 100.00 NA NA 90.00 87.50 100.00 NA NA 100.00 NA 100.00 90.00 NA NA 87.50 92.31 95.24 88.89 NA 88.89 88.89 81.25 90.00 95.65 100.00 NA 100.00 NA NA 94.74 84.62 92.86 95.00 K alternative_donor mael chr3L + chr3L_22717525_22717583;chr3L_22717501_22717583 chr3L_22717513_22717583 chr3L_22717584_22717785;chr3L_22717334_22717500 43.17 42.86 29.17 53.49 45.45 43.75 21.88 41.18 53.85 50.00 35.71 48.89 53.33 22.73 46.15 44.12 36.36 25.00 45.83 34.15 41.67 42.86 50.00 47.06 NA 33.33 NA 42.86 43.75 42.86 43.48 47.83 32.14 51.35 40.00 53.33 27.27 41.67 33.33 48.39 47.62 50.00 52.63 NA 40.00 40.00 NA 47.37 50.00 NA 55.00 37.50 40.00 28.57 45.00 44.44 38.46 34.21 K intron_retention CG9663,I_chr2L_3296691_3296743 chr2L - chr2L_3296691_3296755 chr2L_3296690_3296691;chr2L_3296755_3296756 chr2L_3296591_3296690;chr2L_3296756_3296843 2.13 0.00 0.00 7.89 17.39 4.17 3.03 0.00 2.13 1.92 0.00 4.17 NA NA 0.00 3.45 0.00 NA 0.00 0.00 0.00 9.62 9.09 2.90 3.17 0.00 4.11 3.66 10.94 5.88 0.00 0.00 5.49 0.00 1.96 7.79 2.27 0.00 2.44 4.17 6.25 0.00 NA 4.67 0.00 1.61 2.27 2.50 0.00 4.17 7.23 3.77 0.00 0.00 0.00 0.00 1.72 0.00 K intron_retention nimB2,I_chr2L_13965397_13965694,RI_chr2L_13967695_13967746 chr2L - chr2L_13965397_13965474 chr2L_13965396_13965397;chr2L_13965474_13965475 chr2L_13965297_13965396;chr2L_13965475_13966011 4.00 4.29 2.94 5.88 2.78 7.41 4.00 6.67 5.42 0.00 5.00 3.70 6.67 5.08 3.30 7.46 8.51 5.68 4.11 3.74 4.49 1.41 3.77 1.56 0.00 2.70 0.00 0.00 0.00 4.00 25.00 2.56 1.72 6.19 0.00 0.00 4.44 5.56 1.72 8.00 3.77 3.14 8.33 0.00 9.76 2.94 3.77 5.56 6.90 4.23 3.17 9.68 3.85 4.08 7.69 2.60 2.68 12.50 K intron_retention Cp1,Aats-phe chr2R + chr2R_9852992_9853109 chr2R_9852991_9852992;chr2R_9853109_9853110 chr2R_9852694_9852991;chr2R_9853110_9853290 92.86 92.86 84.21 92.86 100.00 95.24 86.67 86.21 96.97 NA 100.00 97.62 90.91 89.47 92.86 95.00 85.71 94.12 95.00 91.49 92.31 89.66 92.86 100.00 100.00 93.75 100.00 90.00 94.74 100.00 84.21 90.91 95.00 88.89 94.12 100.00 100.00 100.00 91.67 88.57 90.00 88.89 93.75 94.12 90.00 84.21 100.00 84.62 94.12 95.24 91.30 100.00 83.33 NA 85.00 88.89 85.71 83.33 K jcn_only_AA Dscam,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3251271_3255892;chr2R_3254472_3255892;chr2R_3253610_3255892;chr2R_3250700_3255892;chr2R_3252685_3255892;chr2R_3251854_3255892;chr2R_3252399_3255892;chr2R_3250996_3255892;chr2R_3254133_3255892;chr2R_3252123_3255892 chr2R_3252988_3255892 chr2R_3255893_3255920 14.81 12.12 23.08 7.14 25.00 11.90 14.81 9.76 20.00 NA NA 3.90 NA 20.83 16.28 20.00 28.57 NA 9.09 15.56 9.38 5.33 25.00 20.51 13.16 20.00 12.24 4.17 23.26 11.63 13.89 NA 9.09 23.91 17.95 15.38 18.18 12.90 29.23 16.42 NA 13.73 15.00 15.38 NA 26.09 11.11 17.65 16.67 10.00 9.09 4.35 NA NA 8.00 8.70 4.35 NA K alternative_acceptor I_chr2L_11009331_11009442,dUTPase,I_chr2L_11011380_11011453 chr2L + chr2L_11011419_11011479;chr2L_11011419_11011471 chr2L_11011419_11011482 chr2L_11011335_11011418;chr2L_11011483_11011553 0.49 0.62 0.00 0.75 1.22 0.00 0.00 0.00 0.97 0.00 1.08 2.04 0.00 0.00 0.81 0.00 1.49 1.90 1.04 1.27 0.00 0.00 0.00 0.58 NA NA 0.51 0.00 0.83 0.00 1.03 1.20 1.72 1.56 0.00 NA 0.47 0.59 0.49 0.00 NA 0.50 1.33 NA 0.00 0.00 0.61 0.00 0.00 0.50 0.49 0.91 0.00 0.00 0.85 0.00 0.00 0.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814894;chr2R_2815654_2816013;chr2R_2816342_2817327;chr2R_2817604_2817753 chr2R_2814895_2815653;chr2R_2816014_2816341;chr2R_2817328_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9385238_9385296 chr2R_9385237_9385238;chr2R_9385296_9385297 chr2R_9385118_9385237;chr2R_9385297_9385394 0.00 2.60 0.00 0.00 0.00 0.00 0.88 0.00 1.79 0.00 0.00 0.00 1.47 0.00 0.00 2.26 0.00 0.00 0.00 2.42 2.74 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.89 0.00 0.00 0.00 1.55 0.00 1.37 1.37 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.81 1.41 0.00 1.97 0.00 0.00 0.00 0.00 0.00 0.00 1.54 1.39 0.00 K jcn_only_AA CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806425_22807258;chr3R_22806425_22809684;chr3R_22806425_22807254 chr3R_22806425_22807235 chr3R_22806325_22806424 32.79 36.84 35.39 34.33 35.96 32.49 22.78 32.13 40.04 37.50 36.25 33.22 32.33 31.16 27.31 29.07 35.33 34.30 31.14 29.66 29.41 35.35 26.92 39.17 36.05 33.47 32.69 NA 28.26 32.50 32.44 27.08 33.58 29.22 32.58 52.13 29.41 23.33 46.05 36.15 34.78 28.60 31.50 32.89 29.03 33.33 41.74 37.50 35.04 43.33 34.22 25.61 28.87 38.27 27.85 41.18 27.10 29.81 N intron_retention CG1115,F_chr3R_1052705_1053045 chr3R + chr3R_1052701_1053094 chr3R_1052700_1052701;chr3R_1053094_1053095 chr3R_1052605_1052700;chr3R_1053095_1053145 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 82.35 100.00 100.00 100.00 100.00 73.53 100.00 100.00 100.00 100.00 K intron_retention CG42348,I_chr3L_20149990_20151579 chr3L - chr3L_20147939_20148000 chr3L_20147938_20147939;chr3L_20148000_20148001 chr3L_20147711_20147938;chr3L_20148001_20148378 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5220,Patr-1 chr3R + chr3R_12867428_12867484 chr3R_12867427_12867428;chr3R_12867484_12867485 chr3R_12866745_12867427;chr3R_12867485_12867688 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 5.26 NA 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 4.00 0.00 0.00 K alternative_acceptor Pka-R2,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5884726_5885208 chr2R_5885057_5885208 chr2R_5885209_5885394;chr2R_5884467_5884725 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RI_chrX_6482284_6482336,Pat1,I_chrX_6489999_6490050,APC7 chrX + chrX_6489994_6490050 chrX_6489993_6489994;chrX_6490050_6490051 chrX_6489899_6489993;chrX_6490051_6490150 66.13 69.23 69.23 64.63 78.12 77.14 62.79 73.15 63.21 56.67 29.03 57.50 66.13 75.00 77.50 62.20 68.00 56.41 69.35 67.19 40.00 32.65 73.08 70.00 83.33 68.09 72.86 62.22 60.00 56.86 58.93 56.92 43.43 65.56 55.81 66.67 75.76 67.86 63.89 46.75 69.41 64.58 62.22 70.69 45.33 60.82 75.00 47.68 67.68 59.57 73.91 70.59 75.00 63.64 70.37 72.50 68.89 53.90 K intron_retention I_chr3L_834336_834491,F_chr3L_835436_835825,CG42554,CG13887,Gr61a chr3L + chr3L_835871_835935 chr3L_835870_835871;chr3L_835935_835936 chr3L_835826_835870;chr3L_835936_836705 0.00 NA NA NA NA NA 6.25 NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention Fs(2)Ket,RI_chr2L_20738976_20739196,RI_chr2L_20738976_20739750,RI_chr2L_20738976_20749270,I_chr2L_20738976_20749527 chr2L + chr2L_20738976_20739191 chr2L_20738975_20738976;chr2L_20739191_20739192 chr2L_20738876_20738975;chr2L_20739192_20740307 8.33 7.14 10.81 9.43 0.00 10.34 12.24 12.90 7.79 NA 25.00 4.05 14.29 5.71 9.09 10.34 9.09 7.41 0.00 15.56 11.76 0.00 7.41 5.41 NA 10.53 9.09 0.00 22.22 10.00 10.81 NA 14.29 5.71 0.00 10.53 9.09 5.26 12.00 9.52 NA 5.00 10.81 4.08 NA 0.00 NA 7.32 12.16 8.33 5.26 12.12 0.00 0.00 5.41 0.00 0.00 2.27 K intron_retention RluA-2,I_chr2L_10480906_10481097 chr2L + chr2L_10482234_10482284 chr2L_10482233_10482234;chr2L_10482284_10482285 chr2L_10482043_10482233;chr2L_10482285_10482574 0.00 NA NA 0.00 NA NA 0.00 3.12 0.00 0.00 NA 14.29 12.50 0.00 10.53 13.33 NA NA 0.00 8.33 NA NA 0.00 0.00 NA 0.00 4.76 NA 0.00 0.00 3.57 9.09 0.00 0.00 0.00 NA NA NA 0.00 0.00 3.85 0.00 0.00 0.00 0.00 5.13 0.00 4.35 7.50 0.00 0.00 0.00 0.00 NA 0.00 5.26 0.00 6.78 K intron_retention Tm1 chr3R + chr3R_11113544_11113974 chr3R_11113543_11113544;chr3R_11113974_11113975 chr3R_11113187_11113543;chr3R_11113975_11115161 8.89 5.00 9.09 26.92 NA 14.29 5.56 22.22 18.87 NA 10.53 12.50 NA 17.65 7.69 9.09 14.29 NA 25.00 8.47 NA 0.00 6.06 0.00 25.00 NA 15.00 NA NA 11.76 20.00 NA 6.67 18.42 8.70 0.00 7.14 9.68 6.90 9.38 NA 10.00 NA 12.50 0.00 NA 0.00 3.23 14.00 5.56 5.71 5.56 5.88 NA 13.04 7.41 2.38 0.00 K intron_retention Caki chr3R - chr3R_17612585_17612651 chr3R_17612584_17612585;chr3R_17612651_17612652 chr3R_17612504_17612584;chr3R_17612652_17612827 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.53 3.03 3.08 0.00 0.00 0.00 0.00 1.19 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 K jcn_only_AD sdk,I_chrX_581050_581605,I_chrX_581108_581660,I_chrX_625220_634459,I_chrX_636395_636562 chrX + chrX_581043_581605;chrX_581108_581605;chrX_580974_581605 chrX_581160_581605 chrX_581606_581705;chrX_580950_580973 8.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG1021,I_chr3R_2217711_2231099,I_chr3R_2217711_2231390,RI_chr3R_2217711_2231463,I_chr3R_2217742_2218601,I_chr3R_2217742_2219453,I_chr3R_2218465_2231390,RI_chr3R_2218465_2231463,I_chr3R_2218682_2231463,I_chr3R_2219634_2231390,RI_chr3R_2231206_2231270,I_chr3R_2231271_2231390,I_chr3R_2231285_2231463,I_chr3R_2231383_2231463 chr3R - chr3R_2218682_2219453 chr3R_2218681_2218682;chr3R_2219453_2219454 chr3R_2218661_2218681;chr3R_2219454_2219553 0.00 0.00 NA 4.76 NA NA 43.75 0.00 10.00 0.00 6.67 15.38 5.88 NA 0.00 15.00 NA NA 0.00 0.00 0.00 5.26 0.00 0.00 0.00 NA 5.71 0.00 NA 0.00 NA NA 0.00 9.68 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.94 NA 0.00 NA 0.00 0.00 9.09 12.00 0.00 0.00 0.00 0.00 NA 0.00 8.33 0.00 0.00 K cassette CG31158,CG31159 chr3R + chr3R_18414141_18424940 chr3R_18414141_18421353;chr3R_18421572_18424940 chr3R_18421354_18421571 chr3R_18413477_18414140;chr3R_18424941_18425007 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA vir-1,I_chr2L_12404131_12404435,RI_chr2L_12404178_12404435,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,I_chr2L_12421830_12423260 chr2L - chr2L_12404120_12404435 chr2L_12404178_12404435 chr2L_12404436_12404479;chr2L_12404078_12404119 100.00 NA 100.00 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 NA 100.00 97.92 100.00 100.00 NA NA NA 100.00 NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA 100.00 100.00 100.00 100.00 NA 100.00 97.14 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA 100.00 K jcn_only_AA psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6500437_6500490 chr2R_6500437_6500484 chr2R_6500242_6500436;chr2R_6500491_6500880 2.00 NA NA NA NA NA NA NA NA NA NA 4.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA NA NA 0.00 NA 4.17 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 K intron_retention msl-2,CG3238 chr2L - chr2L_3465919_3466051 chr2L_3465918_3465919;chr2L_3466051_3466052 chr2L_3463707_3465918;chr2L_3466052_3466111 0.00 0.00 0.00 4.35 NA NA 4.17 3.33 0.00 0.00 0.00 0.00 NA 6.25 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 6.25 0.00 NA 8.70 NA NA NA 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA 4.00 NA NA 0.00 NA 2.27 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA K intron_retention Ada2b,RI_chr3R_4068335_4068401 chr3R - chr3R_4063975_4064452 chr3R_4063974_4063975;chr3R_4064452_4064453 chr3R_4063910_4063974;chr3R_4064453_4065328 0.00 12.50 NA 5.26 NA NA 5.88 4.55 0.00 0.00 NA 4.35 NA NA NA 6.67 0.00 NA NA 0.00 NA 1.67 0.00 4.35 NA NA 6.90 9.52 6.45 NA NA NA 0.00 0.00 NA 5.56 0.00 0.00 0.00 5.41 0.00 0.00 NA 0.00 0.00 0.00 0.00 9.52 0.00 0.00 0.00 0.00 NA NA 5.88 0.00 0.00 0.00 K intron_retention CG31012,I_chr3R_26643930_26646602 chr3R + chr3R_26650609_26650676 chr3R_26650608_26650609;chr3R_26650676_26650677 chr3R_26650115_26650608;chr3R_26650677_26651748 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive crb chr3R + chr3R_20132606_20133075,chr3R_20133397_20133917 chr3R_20132606_20132734,chr3R_20132864_20133917 chr3R_20133076_20133396 chr3R_20132735_20132863 chr3R_20132583_20132605;chr3R_20133918_20134450 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 K jcn_only_AA puc,CG7878,I_chr3R_3952846_3953762 chr3R + chr3R_3931818_3933961 chr3R_3931818_3933953 chr3R_3931090_3931817;chr3R_3933962_3934100 100.00 100.00 100.00 99.54 100.00 99.50 100.00 99.13 100.00 100.00 100.00 100.00 98.66 100.00 100.00 100.00 100.00 99.45 100.00 100.00 100.00 100.00 100.00 100.00 99.46 100.00 100.00 98.92 99.59 100.00 100.00 100.00 99.48 99.42 100.00 100.00 99.69 100.00 99.60 100.00 100.00 100.00 100.00 99.52 100.00 99.02 100.00 99.61 100.00 100.00 99.72 100.00 100.00 100.00 100.00 99.28 100.00 100.00 K intron_retention srp,I_chr3R_11825782_11827473,I_chr3R_11826508_11826910 chr3R + chr3R_11825782_11826334 chr3R_11825781_11825782;chr3R_11826334_11826335 chr3R_11825682_11825781;chr3R_11826335_11826507 9.09 8.89 12.82 25.53 9.09 9.68 12.90 15.15 10.67 9.52 7.41 10.94 9.68 15.38 6.67 27.27 9.09 7.41 15.79 5.71 0.00 5.17 7.78 11.27 4.76 5.00 10.61 17.14 13.79 17.39 10.53 6.25 8.79 13.46 7.50 11.63 4.69 2.38 7.58 16.33 10.53 9.09 3.85 10.00 0.00 7.84 0.00 13.46 12.90 5.48 5.71 10.71 0.00 0.00 11.76 0.00 0.00 8.33 K intron_retention I_chr2L_12099367_12099435,Aats-thr chr2L + chr2L_12104057_12104491 chr2L_12104056_12104057;chr2L_12104491_12104492 chr2L_12103774_12104056;chr2L_12104492_12104552 9.09 11.11 11.63 11.11 NA 13.33 8.96 20.00 10.61 NA 3.70 8.89 9.09 12.50 6.67 9.26 9.38 6.45 12.90 6.02 2.22 21.43 10.71 14.81 25.00 12.20 15.38 28.57 10.20 4.76 5.00 0.00 4.26 12.12 7.69 14.89 9.09 0.00 8.33 6.25 9.09 8.47 8.33 8.00 0.00 10.34 12.50 6.67 3.77 5.88 13.64 14.29 NA NA 12.77 0.00 5.88 3.70 K intron_retention CG42574,I_chr3R_618802_618939,I_chr3R_621546_625413 chr3R - chr3R_616491_616597 chr3R_616490_616491;chr3R_616597_616598 chr3R_614655_616490;chr3R_616598_617586 0.00 0.00 0.00 2.37 0.00 0.00 0.59 2.48 0.87 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.88 0.87 0.00 1.68 0.00 2.14 0.75 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.61 0.00 0.00 0.00 0.00 0.00 0.00 2.94 K mutually_exclusive CG5174,F_chr2R_14309059_14311473 chr2R + chr2R_14311992_14312376,chr2R_14312582_14312844 chr2R_14311992_14312111,chr2R_14312172_14312844 chr2R_14312377_14312581 chr2R_14312112_14312171 chr2R_14311831_14311991;chr2R_14312845_14312913 0.00 0.00 3.85 0.00 0.00 3.64 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.00 1.47 3.08 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 2.27 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 8.33 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 3.70 1.20 0.00 0.00 0.00 K cassette Ef1alpha100E,I_chr3R_27565587_27567348,I_chr3R_27573809_27574675 chr3R + chr3R_27565587_27567348 chr3R_27565587_27566038;chr3R_27566892_27567348 chr3R_27566039_27566891 chr3R_27565573_27565586;chr3R_27567349_27567448 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA 50.00 NA NA NA NA 100.00 NA NA NA NA NA 50.00 NA NA NA NA 100.00 NA NA NA 100.00 100.00 K intron_retention CG6719 chr3R - chr3R_7234871_7234931 chr3R_7234870_7234871;chr3R_7234931_7234932 chr3R_7234450_7234870;chr3R_7234932_7235326 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Tao-1,I_chrX_19471628_19472934 chrX - chrX_19471628_19473780 chrX_19471628_19473430 chrX_19471528_19471627;chrX_19473781_19473835 98.28 95.45 96.81 96.00 100.00 95.12 94.02 93.55 96.94 98.61 100.00 100.00 97.18 98.65 95.45 94.53 98.41 95.35 95.45 94.21 98.78 94.52 100.00 98.99 100.00 96.25 100.00 100.00 98.70 100.00 95.70 93.02 97.89 96.88 98.89 98.86 99.37 98.95 100.00 99.20 100.00 96.05 98.53 98.89 96.49 95.77 98.21 96.40 96.09 98.28 99.06 98.68 100.00 97.83 97.06 100.00 100.00 96.00 K intron_retention Fur2,RI_chrX_16267905_16268958,I_chrX_16270205_16270272,I_chrX_16274795_16274867 chrX + chrX_16271405_16271455 chrX_16271404_16271405;chrX_16271455_16271456 chrX_16271101_16271404;chrX_16271456_16272679 0.00 1.03 2.70 4.81 0.00 0.00 3.80 1.05 0.00 0.00 0.00 1.21 0.00 0.00 1.25 0.00 0.00 3.03 0.00 1.44 0.00 0.00 1.53 0.00 3.85 0.00 10.32 8.33 5.41 1.12 0.00 0.00 2.26 0.74 0.00 2.04 0.00 0.00 1.33 2.33 4.88 0.55 0.00 0.98 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.94 1.20 3.28 3.85 K intron_retention I_chr3R_261173_261244,CG14650,RI_chr3R_265878_265942 chr3R + chr3R_265874_265942 chr3R_265873_265874;chr3R_265942_265943 chr3R_265778_265873;chr3R_265943_266042 1.59 1.15 0.00 3.12 0.00 0.00 3.85 1.23 4.80 0.00 0.00 0.85 0.00 0.00 2.99 1.49 3.57 3.28 3.17 3.23 0.00 1.49 0.93 1.94 3.39 1.56 1.08 3.57 1.43 1.59 0.00 0.00 3.28 4.82 0.00 2.08 3.42 0.00 1.69 3.12 0.00 4.85 0.00 2.44 0.00 1.32 3.49 2.13 3.41 6.12 2.35 0.00 0.00 5.56 2.70 3.33 2.04 0.00 K intron_retention C3G chrX - chrX_6682159_6682235 chrX_6682158_6682159;chrX_6682235_6682236 chrX_6681623_6682158;chrX_6682236_6682426 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Cg25C,I_chr2L_5029811_5029873 chr2L + chr2L_5029811_5030136;chr2L_5029637_5030136 chr2L_5029747_5030136 chr2L_5030137_5030237;chr2L_5029620_5029636 10.17 7.69 12.00 13.79 8.70 4.55 25.00 10.26 11.76 15.38 4.76 8.70 13.16 15.00 10.34 7.41 0.00 10.71 9.38 8.47 3.12 6.25 21.74 9.09 30.00 9.09 14.29 10.00 21.74 33.33 5.71 6.67 13.64 7.69 7.69 28.57 28.57 18.75 7.14 12.82 15.00 7.78 5.56 15.62 7.69 10.00 0.00 10.17 8.97 30.00 5.26 36.36 4.76 20.00 2.08 15.38 16.67 12.24 K intron_retention FK506-bp2 chr2R + chr2R_15177962_15178022 chr2R_15177961_15177962;chr2R_15178022_15178023 chr2R_15177891_15177961;chr2R_15178023_15178549 0.28 0.13 0.14 0.19 0.56 0.16 0.39 0.27 0.36 0.22 0.00 0.20 0.23 0.09 0.13 0.09 0.13 0.17 0.19 0.20 0.10 1.47 0.33 0.33 0.16 0.52 0.38 0.94 3.30 0.49 0.32 0.31 0.27 0.27 0.28 0.20 0.27 0.32 0.28 0.28 0.31 0.20 0.00 0.26 0.39 0.23 0.19 0.28 0.35 0.28 0.46 0.33 0.34 0.32 0.45 0.28 0.20 0.37 K intron_retention CG7843,I_chr2R_1972736_1972822 chr2R - chr2R_1971513_1971673 chr2R_1971512_1971513;chr2R_1971673_1971674 chr2R_1971446_1971512;chr2R_1971674_1971690 7.18 NA NA 0.00 NA NA 0.00 20.00 21.05 NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA 7.69 NA NA NA 0.00 NA NA 21.43 NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA PP2A-B' chr3R + chr3R_14001957_14002031 chr3R_14001957_14002028 chr3R_14001726_14001956;chr3R_14002032_14002421 99.29 98.84 100.00 100.00 100.00 100.00 98.15 98.48 99.39 100.00 96.00 99.29 98.44 98.53 100.00 100.00 100.00 96.88 96.92 98.66 97.73 100.00 99.21 98.99 100.00 100.00 100.00 100.00 97.78 98.59 100.00 98.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.12 100.00 100.00 100.00 99.08 100.00 98.92 99.22 97.83 98.80 97.97 98.54 98.88 96.49 100.00 98.73 97.50 99.33 98.55 K alternative_acceptor CG40351,CREFI_chr3LHet_606442_607073 chr3LHet + chr3LHet_595061_595211 chr3LHet_595061_595115 chr3LHet_594780_595060;chr3LHet_595212_595365 100.00 100.00 100.00 100.00 93.75 92.86 100.00 100.00 100.00 100.00 100.00 97.87 96.15 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 92.59 100.00 100.00 95.65 100.00 100.00 96.55 96.43 100.00 100.00 96.67 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Aats-glupro chr3R - chr3R_19782491_19782547 chr3R_19782490_19782491;chr3R_19782547_19782548 chr3R_19781428_19782490;chr3R_19782548_19782719 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.73 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083458_8089184;chr2L_8083522_8089184;chr2L_8083637_8089184;chr2L_8083687_8089184 chr2L_8083588_8089184 chr2L_8089185_8089284;chr2L_8083444_8083457 3.63 NA 3.85 4.17 NA 12.50 2.41 3.41 1.09 0.00 NA 6.67 2.13 2.38 0.00 4.17 7.14 0.00 1.69 1.82 NA 6.67 11.54 NA NA 3.33 NA NA 6.45 NA 4.44 NA 8.89 0.00 NA 7.14 NA NA NA 6.06 5.26 1.85 4.44 0.00 NA 0.00 NA 0.00 5.06 NA NA NA NA NA 2.08 NA NA 8.89 K intron_retention Syx8 chr3L - chr3L_16579488_16579540 chr3L_16579487_16579488;chr3L_16579540_16579541 chr3L_16579214_16579487;chr3L_16579541_16580220 0.00 0.00 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon CG30338,CG1902,CG30000,I_chr2R_5495525_5495581 chr2R + chr2R_5481665_5491373 chr2R_5481665_5486086 chr2R_5491374_5493709 chr2R_5486087_5487010 chr2R_5481588_5481664 12.50 13.19 11.88 9.30 12.90 12.99 4.65 7.74 9.55 8.96 7.95 10.49 11.84 10.00 13.04 11.76 11.25 13.48 9.68 12.56 7.06 12.78 15.33 11.67 7.41 7.78 6.85 14.10 14.95 11.70 5.92 14.29 18.92 10.97 14.10 9.65 12.50 13.64 13.74 15.60 10.00 10.92 13.51 12.77 24.44 12.41 21.70 13.01 10.44 12.12 14.73 14.63 20.29 15.56 10.09 14.85 20.00 16.81 K jcn_only_AD CG4589,I_chr2R_20402394_20402462,I_chr2R_20402394_20402706 chr2R - chr2R_20402394_20402809;chr2R_20402394_20402785 chr2R_20402394_20402753 chr2R_20402294_20402393;chr2R_20402810_20402813 98.08 NA 97.30 95.00 NA 100.00 98.04 100.00 96.23 NA 100.00 98.18 100.00 100.00 96.97 98.33 90.91 95.00 92.50 96.49 100.00 NA NA NA NA 100.00 NA NA 90.91 NA 100.00 NA 92.86 100.00 NA NA NA NA NA 95.24 NA 98.08 96.77 NA 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA 90.32 NA NA 95.83 K intron_retention CG11168,I_chr3R_20745770_20745849,I_chr3R_20745983_20746038 chr3R + chr3R_20745770_20746080 chr3R_20745769_20745770;chr3R_20746080_20746081 chr3R_20745670_20745769;chr3R_20746081_20746138 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 90.91 NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA 100.00 NA 92.31 100.00 NA NA NA NA 90.00 93.33 NA 100.00 NA NA 100.00 NA NA 100.00 100.00 NA NA NA NA NA 90.00 NA NA 100.00 K cassette granny-smith,I_chr3R_8776241_8784793,I_chr3R_8782481_8782663,I_chr3R_8792471_8792881 chr3R - chr3R_8776241_8784793 chr3R_8776241_8782663;chr3R_8782841_8784793 chr3R_8782664_8782840 chr3R_8776141_8776240;chr3R_8784794_8784893 99.73 100.00 99.32 98.27 100.00 100.00 100.00 100.00 99.64 100.00 100.00 100.00 100.00 99.24 100.00 100.00 100.00 99.27 99.23 100.00 100.00 100.00 100.00 98.99 100.00 100.00 98.44 96.80 94.49 100.00 100.00 100.00 99.47 100.00 99.26 99.30 100.00 100.00 99.51 99.19 98.91 99.62 99.14 99.14 98.03 99.60 100.00 98.53 99.59 99.35 100.00 100.00 99.47 99.33 100.00 99.43 99.64 99.73 K intron_retention CG42490,RI_chr2L_18666413_18666474,CREI_chr2L_18666629_18666680 chr2L + chr2L_18666629_18666691 chr2L_18666628_18666629;chr2L_18666691_18666692 chr2L_18666560_18666628;chr2L_18666692_18666739 19.35 25.00 29.63 NA 17.65 13.04 17.65 19.51 25.00 NA 12.50 20.83 22.73 24.00 16.00 28.57 3.57 20.00 24.14 26.09 25.00 NA 24.24 17.65 16.67 15.38 19.35 NA NA 29.41 21.95 12.50 7.69 15.62 NA NA 14.29 23.53 14.63 13.64 17.65 23.44 31.25 NA 11.11 17.50 24.14 27.27 31.71 13.04 14.81 6.67 16.67 12.00 26.09 21.05 15.91 22.22 K intron_retention I_chr3L_834336_834491,CG13887,Gr61a chr3L + chr3L_838625_839102 chr3L_838624_838625;chr3L_839102_839103 chr3L_838049_838624;chr3L_839103_839740 61.82 NA NA 72.73 NA NA NA 41.67 NA NA NA 66.67 63.64 NA NA NA NA NA NA NA NA 69.89 NA NA NA NA NA 77.78 73.33 NA NA NA 28.57 NA NA 28.57 NA NA NA 40.00 NA 70.00 NA NA 46.67 50.00 NA NA NA 66.67 60.00 NA NA NA 40.00 NA NA NA K alternative_donor CG42533,EI_chr2L_7473200_7473297,RI_chr2L_7473200_7473419,F_chr2L_7476906_7476978 chr2L - chr2L_7473200_7473656;chr2L_7473200_7473297;chr2L_7473200_7473419 chr2L_7473200_7473770 chr2L_7473100_7473199;chr2L_7473771_7473889 1.27 2.70 0.00 3.77 0.00 0.00 1.92 1.49 1.28 0.00 0.00 1.47 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 2.94 0.00 4.00 0.00 0.00 0.00 2.70 2.08 0.00 3.03 2.56 2.08 3.70 2.27 1.61 2.27 1.30 3.03 2.08 0.00 0.00 2.63 0.00 1.27 0.00 0.00 3.85 0.00 3.45 1.92 2.50 2.33 0.00 K jcn_only_AD CG14741 chr3R - chr3R_7899339_7900180 chr3R_7899339_7899925 chr3R_7899048_7899338;chr3R_7900181_7900195 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.54 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.21 99.64 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor Spred,I_chr2R_10655876_10656868 chr2R - chr2R_10650580_10651335 chr2R_10650580_10650923 chr2R_10650424_10650579;chr2R_10651336_10651504 4.76 3.08 5.13 1.92 5.26 4.65 9.62 8.00 4.35 4.76 7.69 10.14 5.41 4.35 4.00 9.38 29.17 4.88 7.14 5.95 5.71 7.55 3.17 3.57 4.17 5.71 3.17 59.09 10.53 4.44 4.26 6.25 12.20 5.00 5.88 4.76 1.72 3.64 3.57 10.29 5.88 2.35 5.71 3.28 5.41 3.33 2.38 11.54 4.62 12.12 3.12 2.56 2.56 4.55 4.17 1.92 2.70 9.38 K intron_retention CG18659,E_chr2R_5011363_5019110,I_chr2R_5016147_5016997 chr2R - chr2R_5015703_5015761 chr2R_5015702_5015703;chr2R_5015761_5015762 chr2R_5015442_5015702;chr2R_5015762_5015815 0.00 3.92 0.00 2.67 0.00 0.00 0.00 2.70 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 1.41 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 1.32 0.00 3.23 0.00 K intron_retention CG4169,CG32163 chr3L + chr3L_16577545_16577688 chr3L_16577544_16577545;chr3L_16577688_16577689 chr3L_16577401_16577544;chr3L_16577689_16577822 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 K cassette CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20824631_20825667;chr2L_20824494_20825658;chr2L_20824494_20825667;chr2L_20824725_20825667;chr2L_20824631_20825658 chr2L_20824631_20825271,chr2L_20824494_20825271,chr2L_20824725_20825271;chr2L_20825513_20825658,chr2L_20825513_20825667 chr2L_20825272_20825512 chr2L_20824482_20824493;chr2L_20825668_20825758 33.33 46.30 17.24 17.82 15.29 16.47 25.33 12.61 22.66 50.00 46.15 17.68 8.27 17.59 15.03 15.62 18.26 22.11 13.33 15.92 27.16 54.17 73.47 64.44 71.43 22.22 75.00 58.97 48.08 46.43 22.22 33.33 25.38 16.06 60.78 67.57 59.18 75.86 64.29 52.42 38.46 15.18 13.33 49.32 20.78 49.00 58.00 30.22 17.65 75.00 64.29 60.71 46.94 76.32 14.63 54.84 45.45 21.81 K jcn_only_AD alt,I_chr3R_13503901_13504925,RI_chr3R_13503901_13505368,I_chr3R_13503901_13507824 chr3R - chr3R_13503901_13507816;chr3R_13503901_13508178;chr3R_13503901_13508180 chr3R_13503901_13508123 chr3R_13503801_13503900;chr3R_13508181_13508234 9.15 12.50 7.95 12.14 4.35 6.85 9.89 12.64 7.57 NA 6.67 8.21 5.26 9.21 7.45 9.65 7.58 2.15 9.41 9.52 7.84 10.00 3.23 11.54 13.64 7.69 19.23 21.74 NA 15.38 8.77 NA 27.59 5.67 NA NA 19.23 8.00 11.54 10.26 NA 10.34 5.41 13.64 0.00 NA NA NA 5.73 13.33 13.04 8.33 10.00 NA 4.26 NA 9.09 0.00 K jcn_only_AD l(3)82Fd,I_chr3R_1121686_1121886,I_chr3R_1147660_1148709 chr3R - chr3R_1121686_1121886 chr3R_1121686_1121868 chr3R_1121586_1121685;chr3R_1121887_1121986 98.28 98.28 92.59 94.67 100.00 96.00 98.61 97.20 98.63 100.00 96.36 97.52 100.00 95.56 98.78 98.65 98.48 94.67 98.25 97.78 97.92 100.00 98.59 97.06 100.00 97.10 98.36 100.00 94.12 100.00 100.00 100.00 96.55 98.99 100.00 97.50 98.70 98.55 97.40 95.18 100.00 99.26 96.43 94.12 92.59 97.67 100.00 97.96 96.03 97.87 98.73 100.00 100.00 96.43 94.74 100.00 97.44 100.00 K intron_retention ImpL2,I_chr3L_4225707_4225972,I_chr3L_4225707_4226245,I_chr3L_4225707_4226564,I_chr3L_4226910_4226993 chr3L - chr3L_4225707_4225883 chr3L_4225706_4225707;chr3L_4225883_4225884 chr3L_4225607_4225706;chr3L_4225884_4225952 32.16 27.27 35.71 55.56 7.69 41.67 25.00 33.33 30.23 35.29 NA 28.57 NA 33.33 46.67 35.71 28.57 66.67 43.75 30.30 41.67 21.79 36.84 21.05 30.43 31.58 31.82 43.18 28.36 35.90 31.25 26.09 39.39 37.04 47.06 44.83 21.74 25.00 16.67 44.00 32.50 25.71 41.67 38.10 31.58 39.47 25.71 34.21 50.00 25.58 26.47 26.32 41.67 22.22 NA 26.09 21.05 35.00 K intron_retention Taf1 chr3R + chr3R_2479013_2480191 chr3R_2479012_2479013;chr3R_2480191_2480192 chr3R_2478682_2479012;chr3R_2480192_2480386 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 2.38 0.00 0.00 3.33 0.00 5.56 7.41 0.00 NA 0.00 NA 0.00 0.00 2.56 0.00 5.41 0.00 0.00 0.00 5.71 5.56 6.90 NA 0.00 2.70 0.00 6.25 0.00 1.85 3.23 3.77 7.89 0.00 3.92 NA 0.00 0.00 6.06 5.71 2.70 0.00 0.00 6.25 9.09 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Vha100-1,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24956994_24957407 chr3R_24957170_24957407 chr3R_24957408_24957547;chr3R_24956989_24956993 0.00 2.78 0.00 0.00 0.00 5.45 0.69 0.00 0.44 1.69 0.00 0.00 1.35 1.37 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 1.25 0.00 0.00 0.78 0.00 0.00 0.80 0.00 0.00 1.77 0.00 0.00 0.00 0.00 1.82 0.00 2.50 0.00 0.74 1.82 0.00 0.00 0.00 3.57 1.18 0.00 1.49 0.00 K jcn_only_AA CG1265,I_chr3L_4255296_4255550 chr3L + chr3L_4255296_4255353;chr3L_4255296_4255609;chr3L_4255296_4255550 chr3L_4255296_4255457 chr3L_4255196_4255295;chr3L_4255610_4255650 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 1.07 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.91 0.00 2.27 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 1.39 1.72 0.00 0.00 0.00 0.00 3.03 K intron_retention mRpS11,I_chr3R_12898717_12898778 chr3R + chr3R_12899290_12899349 chr3R_12899289_12899290;chr3R_12899349_12899350 chr3R_12899224_12899289;chr3R_12899350_12899517 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 2.78 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Snap,I_chr3L_20306985_20307177 chr3L + chr3L_20308404_20308497 chr3L_20308403_20308404;chr3L_20308497_20308498 chr3L_20308083_20308403;chr3L_20308498_20309665 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 1.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.61 0.00 0.55 0.48 0.00 0.00 0.52 0.47 0.00 0.00 0.54 0.43 0.00 0.00 0.00 0.00 K intron_retention aru,I_chr2L_864795_867505,snoRNA:Me28S-U1230 chr2L - chr2L_864795_868031 chr2L_864794_864795;chr2L_868031_868032 chr2L_864695_864794;chr2L_868032_868418 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 1.39 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 3.33 1.27 0.00 0.00 0.00 3.33 1.30 2.08 0.00 1.67 0.00 0.00 1.16 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.93 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Jra,I_chr2R_5987356_5991764,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5984644_5984747 chr2R_5984643_5984644;chr2R_5984747_5984748 chr2R_5984510_5984643;chr2R_5984748_5986061 0.00 0.00 0.00 1.46 0.00 0.00 0.00 1.09 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 2.27 6.67 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG3632,RI_chrX_16195880_16196242 chrX + chrX_16190824_16191693 chrX_16190824_16191682 chrX_16190763_16190823;chrX_16191694_16191751 15.74 NA NA 20.00 NA NA NA 13.04 12.50 NA NA 19.23 NA NA NA 14.81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.00 NA NA NA NA 8.00 NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA K alternative_donor regucalcin,I_chrX_11910759_11910811 chrX + chrX_11910755_11910811 chrX_11910759_11910811 chrX_11910812_11910911;chrX_11910659_11910754 0.18 0.00 0.19 0.34 0.00 0.19 0.32 0.33 0.28 0.00 0.00 0.11 0.00 0.43 0.00 0.29 0.00 0.14 0.20 0.24 0.15 0.62 0.00 0.00 0.25 0.00 0.41 0.00 0.31 0.31 0.00 0.18 0.00 0.38 0.23 0.56 0.17 0.00 0.34 0.40 0.00 0.08 0.22 0.00 0.00 0.36 0.00 0.00 0.22 0.12 0.25 0.19 0.21 0.00 0.18 0.12 0.11 0.20 K intron_retention Df31,RE_chr2L_21628206_21629662,I_chr2L_21628206_21629666,I_chr2L_21628210_21628515,I_chr2L_21628210_21628944,I_chr2L_21628210_21629216,EI_chr2L_21628210_21629715,REI_chr2L_21628210_21629884,I_chr2L_21628224_21629666,I_chr2L_21628734_21629666 chr2L - chr2L_21628210_21628944 chr2L_21628209_21628210;chr2L_21628944_21628945 chr2L_21628124_21628209;chr2L_21628945_21629044 97.06 NA NA 100.00 NA NA 88.89 100.00 91.67 NA NA 92.31 NA NA NA 100.00 NA NA NA 92.86 NA NA 100.00 100.00 NA NA 94.12 NA NA NA NA NA NA 91.67 NA NA 100.00 100.00 NA 91.67 NA 90.00 NA NA NA NA NA NA 90.91 100.00 90.00 100.00 NA 100.00 NA NA NA NA K cassette Fis1,I_chr2R_1491917_1492087,I_chr2R_1492154_1492214 chr2R - chr2R_1492022_1492214 chr2R_1492022_1492093;chr2R_1492156_1492214 chr2R_1492094_1492155 chr2R_1491982_1492021;chr2R_1492215_1492311 87.50 90.91 82.05 82.00 77.78 90.91 94.20 86.59 87.01 90.91 73.68 81.82 89.13 93.55 95.83 81.52 71.43 84.00 86.79 86.36 88.46 100.00 88.89 89.74 94.74 77.78 78.57 84.62 66.67 84.62 80.85 85.71 100.00 91.30 90.62 73.33 76.92 95.24 85.19 96.30 100.00 91.07 87.50 93.48 84.62 98.04 92.59 100.00 88.24 87.88 87.23 87.50 85.29 89.58 83.33 84.31 85.00 96.43 K intron_retention Anxb11,I_chrX_16314152_16314405,I_chrX_16314152_16315813 chrX - chrX_16313083_16314082 chrX_16313082_16313083;chrX_16314082_16314083 chrX_16312701_16313082;chrX_16314083_16314148 5.59 8.00 3.77 4.48 2.63 2.63 4.44 4.00 6.02 4.55 0.00 4.05 6.06 5.41 3.28 12.20 4.76 24.00 5.66 8.22 5.00 35.00 8.62 3.85 7.69 0.00 12.50 10.00 10.53 13.64 3.77 5.56 15.00 3.12 12.50 7.41 5.00 7.69 9.52 5.00 NA 5.63 0.00 5.71 9.38 5.88 8.33 4.35 5.08 6.78 4.76 0.00 5.71 3.33 0.00 4.76 5.88 5.71 K alternative_donor cenB1A chr3R + chr3R_18949110_18949164 chr3R_18949114_18949164 chr3R_18949165_18949936;chr3R_18947955_18949109 0.00 0.00 0.78 1.02 0.00 0.00 0.50 0.42 0.30 0.00 0.00 0.00 1.12 0.00 0.80 0.00 0.00 0.83 0.00 0.36 0.92 0.00 0.00 0.00 0.00 0.00 1.47 0.79 0.00 0.00 1.44 0.00 0.64 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 1.60 0.98 0.00 0.00 0.00 0.00 0.00 0.72 K alternative_donor AnnIX chr3R + chr3R_16891008_16893167;chr3R_16891124_16893167;chr3R_16891033_16893167 chr3R_16891137_16893167 chr3R_16893168_16893221;chr3R_16890951_16891007 6.52 9.23 2.81 3.92 8.47 2.78 10.00 4.46 9.94 4.35 10.71 5.88 8.77 5.41 2.91 8.05 5.00 2.68 4.37 4.07 5.60 11.59 14.29 8.11 14.29 3.66 15.22 21.05 12.50 7.69 3.30 2.38 3.03 4.41 12.20 15.15 19.23 11.54 6.25 2.90 7.14 3.99 5.43 13.33 0.95 5.56 6.52 2.44 3.47 11.11 13.56 20.00 17.39 8.82 4.88 10.26 10.00 2.33 K alternative_acceptor CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3018025_3018163;chr2L_3018018_3018163;chr2L_3018082_3018163 chr2L_3018038_3018163 chr2L_3018164_3018185;chr2L_3017982_3018017 2.94 5.56 4.00 2.94 12.50 7.41 2.70 1.92 1.52 0.00 7.69 2.27 5.00 3.70 5.88 0.00 4.55 4.35 3.33 4.17 5.88 0.00 5.26 6.67 11.11 0.00 4.00 28.57 0.00 8.33 2.44 0.00 0.00 2.56 5.56 0.00 7.69 12.50 28.57 0.00 0.00 2.94 5.26 0.00 0.00 0.00 0.00 0.00 2.08 0.00 4.35 9.09 0.00 0.00 3.70 0.00 6.67 0.00 K intron_retention CG14235,noncoding_24847,CG18809,noncoding_24848 chrX - chrX_19635202_19638294 chrX_19635201_19635202;chrX_19638294_19638295 chrX_19634765_19635201;chrX_19638295_19638317 2.74 2.97 0.93 4.00 0.50 0.60 2.53 2.70 2.39 1.98 1.49 3.24 1.88 3.73 3.02 3.03 2.33 4.32 3.14 3.42 1.64 2.69 3.59 2.87 0.84 1.49 1.53 2.02 5.63 5.38 1.06 4.76 6.94 3.16 5.13 1.98 2.46 2.21 3.39 2.42 4.29 2.14 2.48 1.65 2.82 3.26 3.02 6.38 2.74 3.60 4.27 2.03 1.55 3.38 0.78 3.23 1.57 3.52 K cassette CG8788,RI_chr2R_5026311_5026442,I_chr2R_5026774_5026825,RI_chr2R_5026774_5026866,RI_chr2R_5026774_5028942,RI_chr2R_5033951_5034150,I_chr2R_5036518_5036570 chr2R + chr2R_5026076_5027484 chr2R_5026076_5026416;chr2R_5026774_5027484 chr2R_5026417_5026773 chr2R_5026036_5026075;chr2R_5027485_5027803 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20336405_20336466;chr2L_20336405_20336469 chr2L_20336405_20336463 chr2L_20336338_20336404;chr2L_20336470_20336529 20.73 20.65 21.43 26.19 27.78 19.15 17.76 21.74 25.11 13.89 20.73 26.22 19.72 20.83 15.31 17.50 20.45 15.79 20.95 22.35 19.12 23.58 24.84 16.92 21.74 13.98 17.80 21.05 22.70 18.80 22.47 16.90 19.09 21.82 26.73 16.67 16.79 30.34 23.78 21.13 19.57 19.64 20.00 15.65 20.81 16.55 24.53 20.22 21.71 27.33 19.69 35.00 15.28 23.23 23.31 21.36 19.33 20.00 K jcn_only_AD Dscam,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3249373_3250528;chr2R_3249373_3251682;chr2R_3249373_3254309;chr2R_3249373_3253447;chr2R_3249373_3252522;chr2R_3249373_3252816;chr2R_3249373_3253970;chr2R_3249373_3250836;chr2R_3249373_3251960;chr2R_3249373_3251099 chr2R_3249373_3252236 chr2R_3249273_3249372 12.07 10.71 8.51 20.31 20.00 6.45 12.50 12.07 14.63 18.18 NA 11.76 21.62 11.76 14.63 16.98 8.33 16.13 0.00 6.67 8.00 18.75 15.71 0.00 8.51 12.00 2.70 19.35 12.50 12.94 11.76 17.86 13.75 3.64 19.35 2.38 9.09 5.26 14.63 15.73 24.14 10.77 12.50 6.90 9.09 18.42 8.33 10.47 11.94 NA 15.56 25.00 9.68 NA 13.46 5.00 NA 13.04 K intron_retention Ctr1A,I_chrX_6558480_6559032 chrX + chrX_6559720_6560272 chrX_6559719_6559720;chrX_6560272_6560273 chrX_6559472_6559719;chrX_6560273_6560285 54.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 29.41 NA NA NA NA 60.00 35.71 NA NA NA NA NA NA NA NA 58.33 NA 54.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG33129,I_chr2L_10966410_10967142,noncoding_2515,I_chr2L_10966622_10967108 chr2L - chr2L_10966622_10968083;chr2L_10966622_10968133;chr2L_10966622_10967855 chr2L_10966622_10968104 chr2L_10966522_10966621;chr2L_10968134_10968152 5.77 8.70 5.17 3.48 1.79 17.95 5.77 2.80 7.22 NA 1.67 3.36 5.66 1.56 5.81 6.19 10.00 4.69 6.10 5.85 4.35 13.64 NA NA NA 8.89 NA NA 4.00 NA 6.35 3.23 9.26 4.46 NA NA NA NA NA NA 21.43 2.72 9.26 NA 0.00 17.24 NA 3.03 7.98 NA NA 4.76 NA NA 8.22 NA 8.70 4.60 K intron_retention CG31279,CG17565 chr3R + chr3R_12259217_12259278 chr3R_12259216_12259217;chr3R_12259278_12259279 chr3R_12258966_12259216;chr3R_12259279_12259950 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N multi_cassette CG7956,CE_chr3R_17350242_17350304 chr3R + chr3R_17350238_17351248 chr3R_17350238_17350300;chr3R_17350372_17350806;chr3R_17351023_17351248 chr3R_17350301_17350371;chr3R_17350807_17351022 chr3R_17350142_17350237;chr3R_17351249_17351485 4.55 5.26 12.50 2.70 0.00 NA 2.44 2.70 3.77 NA NA 6.25 0.00 4.76 8.33 8.33 4.76 3.45 5.88 5.56 5.88 0.00 2.08 2.78 3.45 4.17 3.45 0.00 6.67 4.35 10.00 7.69 11.54 5.41 0.00 14.29 0.00 0.00 3.45 4.76 6.25 6.25 5.56 4.00 9.52 8.33 5.88 14.29 5.88 0.00 0.00 0.00 NA NA 4.35 4.17 3.85 25.00 K alternative_donor CG9175 chr2L - chr2L_6098492_6098932 chr2L_6098492_6098555 chr2L_6097544_6098491;chr2L_6098933_6099001 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG5359 chr3R - chr3R_5826088_5826294 chr3R_5826091_5826294 chr3R_5826295_5826603;chr3R_5825900_5826087 22.48 NA NA 22.22 NA NA 36.36 22.73 36.84 NA NA 20.00 NA 16.67 NA NA 36.36 NA 36.36 20.00 15.38 NA 20.00 25.00 NA NA 30.00 NA NA NA 26.09 NA 35.71 25.00 NA NA NA NA 11.76 23.08 NA 45.45 NA NA NA 21.43 17.65 NA 21.74 17.65 NA NA 33.33 15.79 NA 20.00 16.67 25.00 K alternative_donor Hyperkinetic,I_chrX_10148341_10149525,I_chrX_10152994_10153223 chrX - chrX_10135770_10136866 chrX_10135770_10136842 chrX_10135451_10135769;chrX_10136867_10136901 87.30 NA NA NA NA NA 84.62 NA NA 88.89 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 77.78 NA NA NA NA NA NA NA NA NA 100.00 85.71 88.89 NA NA NA NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA K alternative_donor vap,RI_chrX_15897976_15899352,I_chrX_15897976_15899654,I_chrX_15898011_15899654,I_chrX_15898427_15899017,RI_chrX_15898427_15899654,RI_chrX_15899237_15899352,I_chrX_15899237_15899654 chrX - chrX_15897976_15899654 chrX_15897976_15899352 chrX_15897911_15897975;chrX_15899655_15899705 100.00 90.00 95.83 100.00 100.00 93.33 95.83 100.00 92.31 100.00 92.86 90.00 100.00 100.00 100.00 97.22 95.00 91.67 95.00 97.50 100.00 94.44 87.50 100.00 100.00 94.12 100.00 100.00 87.50 100.00 96.00 83.33 93.33 96.77 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 88.89 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 85.71 87.50 100.00 K jcn_only_AD scaf6,EI_chr3L_17037760_17037808 chr3L - chr3L_17032731_17034793;chr3L_17032731_17033237 chr3L_17032731_17033538 chr3L_17032656_17032730 27.75 25.93 35.00 21.15 NA NA 9.09 11.11 21.05 NA 25.93 18.60 NA 39.13 NA 20.45 33.33 NA 18.52 29.41 34.62 NA 32.81 44.44 33.33 14.81 23.68 NA NA NA 50.00 NA 38.10 28.21 9.09 36.00 NA 28.00 17.86 33.33 NA 13.21 4.76 29.17 NA 35.00 NA NA 32.56 26.47 27.50 NA NA NA NA 23.33 35.00 NA K intron_retention fs(1)h,I_chrX_7950171_7952371,RI_chrX_7954192_7954783,I_chrX_7954192_7955240 chrX - chrX_7954192_7954935 chrX_7954191_7954192;chrX_7954935_7954936 chrX_7954092_7954191;chrX_7954936_7954951 3.45 NA 0.00 5.41 NA 0.00 11.11 3.23 3.77 NA 0.00 8.33 0.00 8.33 0.00 0.00 4.76 NA 3.45 6.38 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA 4.44 NA NA NA NA NA 11.11 NA 4.35 0.00 NA NA NA NA NA 5.26 NA NA NA NA NA 0.00 NA NA NA K jcn_only_AD exba,RI_chr3R_1425087_1425302,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1425087_1426209;chr3R_1425087_1425759;chr3R_1425087_1426125 chr3R_1425087_1426009 chr3R_1424987_1425086;chr3R_1426210_1426225 10.94 10.34 9.62 8.62 7.41 10.64 14.29 9.68 13.71 13.51 4.55 6.67 12.50 12.24 15.62 5.88 6.00 16.13 10.94 7.50 1.43 3.57 6.52 12.96 8.82 5.71 16.33 9.43 0.00 12.28 12.00 11.63 3.70 8.65 4.65 3.45 18.03 14.00 10.81 12.15 10.34 10.68 18.00 13.51 16.67 13.19 8.51 3.64 13.82 20.59 16.13 12.50 13.51 11.11 11.76 9.09 22.22 13.51 K intron_retention exba,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1425813_1426209 chr3R_1425812_1425813;chr3R_1426209_1426210 chr3R_1425790_1425812;chr3R_1426210_1426225 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 98.46 100.00 100.00 98.25 100.00 100.00 100.00 96.83 100.00 100.00 100.00 98.77 97.06 100.00 100.00 100.00 100.00 100.00 100.00 96.43 96.97 95.65 97.50 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.59 100.00 100.00 100.00 100.00 97.06 97.62 100.00 98.08 100.00 96.43 100.00 96.00 88.89 100.00 100.00 100.00 100.00 100.00 N multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814174;chr2R_2814327_2814894;chr2R_2815657_2816013;chr2R_2816342_2816577;chr2R_2816779_2817753 chr2R_2814175_2814326;chr2R_2814895_2815656;chr2R_2816014_2816341;chr2R_2816578_2816778 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 66.67 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette CG3209,I_chr2R_19957751_19959513,RI_chr2R_19957766_19960227,I_chr2R_19959163_19959513 chr2R + chr2R_19957766_19960227 chr2R_19957766_19959517;chr2R_19959748_19960227 chr2R_19959518_19959747 chr2R_19957666_19957765;chr2R_19960228_19960327 19.33 17.83 22.96 14.62 13.64 15.15 12.38 12.44 14.80 16.30 20.80 23.50 6.60 16.50 14.55 23.30 21.70 46.51 17.21 25.86 35.34 6.38 24.75 27.22 21.49 19.33 17.49 17.20 15.29 18.18 27.83 20.87 16.40 18.23 17.43 33.33 21.60 18.40 23.11 23.94 19.84 14.40 15.56 24.52 22.93 25.77 19.62 21.43 19.02 16.22 18.58 15.96 24.22 25.40 16.46 19.59 25.84 30.43 K intron_retention CG1399,I_chr2R_3574133_3574191 chr2R - chr2R_3568976_3569045 chr2R_3568975_3568976;chr2R_3569045_3569046 chr2R_3568813_3568975;chr2R_3569046_3569053 0.00 NA NA 14.29 NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 6.25 0.00 0.00 NA 0.00 5.00 0.00 0.00 NA 0.00 2.86 NA 11.11 0.00 0.00 0.00 5.41 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 7.41 NA NA 9.52 NA 0.00 NA NA NA 0.00 0.00 K alternative_acceptor arr,I_chr2R_9343426_9343486,I_chr2R_9347031_9370659 chr2R - chr2R_9369590_9370659 chr2R_9369720_9370659 chr2R_9370660_9370692;chr2R_9369281_9369589 7.69 NA NA NA NA NA 7.14 NA 11.76 NA NA NA NA NA NA 7.69 NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG7148 chr3L - chr3L_21823833_21823889 chr3L_21823832_21823833;chr3L_21823889_21823890 chr3L_21823554_21823832;chr3L_21823890_21824586 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 7.14 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 NA 14.29 NA NA NA NA 0.00 0.00 NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA K jcn_only_AA RanBPM chr2R + chr2R_6322096_6322141;chr2R_6322096_6322150 chr2R_6322096_6322156 chr2R_6321932_6322095;chr2R_6322157_6322290 31.52 34.48 28.85 38.62 28.99 34.12 35.71 24.83 30.77 36.84 36.76 31.64 30.34 23.91 36.52 34.68 26.87 23.46 36.11 37.02 30.34 27.93 30.49 31.86 31.76 31.52 25.52 27.78 35.71 32.14 32.61 35.21 25.88 32.39 23.30 22.81 30.89 31.13 32.17 28.67 31.15 30.77 38.36 33.61 31.68 30.85 29.03 28.85 35.03 24.26 31.85 23.33 37.37 32.41 41.32 29.47 31.58 30.86 K alternative_donor CG8680 chr2L - chr2L_5099674_5099736 chr2L_5099674_5099731 chr2L_5099500_5099673;chr2L_5099737_5099913 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14425,Sxl,CG14425_Sxl,CEFI_chrX_6981717_6984166,CEF_chrX_6984538_6992033 chrX - chrX_6982801_6985706 chrX_6982800_6982801;chrX_6985706_6985707 chrX_6982786_6982800;chrX_6985707_6985745 13.16 NA 11.11 8.00 NA NA 18.92 18.52 13.16 NA NA 25.00 14.29 33.33 NA 22.73 15.38 NA 23.53 11.43 NA NA NA 0.00 12.50 NA 6.67 NA NA NA 0.00 NA NA 16.67 NA NA NA NA NA 13.04 NA 15.00 6.67 6.25 NA NA NA 41.67 13.79 NA NA 5.56 NA NA 10.53 NA NA NA K multi_cassette DCAP,E_chr2R_6159586_6174578,I_chr2R_6162362_6166803,I_chr2R_6163353_6166716,I_chr2R_6163353_6166727,I_chr2R_6164310_6172914,I_chr2R_6172307_6179999,I_chr2R_6178643_6181126,RI_chr2R_6183553_6192101,I_chr2R_6188094_6192101 chr2R + chr2R_6159586_6181126 chr2R_6159586_6179999;chr2R_6180378_6180845;chr2R_6180945_6181126 chr2R_6180000_6180377;chr2R_6180846_6180944 chr2R_6159486_6159585;chr2R_6181127_6181226 78.89 87.50 66.67 NA 83.33 80.00 75.00 83.33 73.33 80.00 66.67 76.47 75.00 83.33 85.71 66.67 71.43 42.86 50.00 40.00 75.00 NA 100.00 88.89 100.00 100.00 100.00 NA 100.00 83.33 80.00 NA 75.00 80.00 66.67 75.00 87.50 100.00 70.00 88.89 NA 69.23 60.00 62.50 100.00 66.67 66.67 100.00 61.54 71.43 75.00 60.00 77.78 80.00 87.50 80.00 85.71 100.00 K jcn_only_AA Vha44,I_chr2R_12220926_12223455 chr2R - chr2R_12214666_12220538 chr2R_12217904_12220538 chr2R_12220539_12220692 0.60 1.69 0.00 0.60 0.00 0.93 0.00 0.52 0.37 1.30 0.00 0.88 0.00 0.00 0.00 0.71 1.28 0.00 0.88 0.76 0.00 0.63 0.61 1.40 0.00 0.00 0.00 0.00 0.71 1.36 0.00 1.00 2.89 0.00 3.03 0.98 0.00 0.74 0.57 0.00 0.00 0.00 1.06 0.60 1.47 0.00 1.72 0.00 0.00 1.09 2.35 0.00 0.00 1.14 0.68 3.26 2.06 0.63 K jcn_only_AA Ate1 chr2R - chr2R_16144114_16144194 chr2R_16144135_16144194 chr2R_16144195_16144252;chr2R_16143941_16144113 6.74 10.45 11.11 18.64 0.00 2.08 7.35 2.94 7.02 1.96 13.33 8.54 12.00 7.89 6.52 3.57 7.50 6.98 1.85 8.18 11.11 8.33 5.37 6.48 4.48 8.00 5.94 8.00 5.81 5.61 4.08 5.13 12.12 5.06 5.00 14.47 6.67 3.92 3.81 9.09 16.39 6.74 10.42 5.94 14.52 7.14 1.67 15.79 4.71 4.17 5.79 7.46 5.88 1.49 4.17 12.82 7.50 8.89 K cassette zip,I_chr2R_20878796_20879147 chr2R - chr2R_20884825_20887561 chr2R_20884825_20885800;chr2R_20885825_20887561 chr2R_20885801_20885824 chr2R_20884732_20884824;chr2R_20887562_20887683 94.62 100.00 94.74 95.92 93.33 88.14 94.03 92.47 95.83 100.00 93.18 98.89 98.00 100.00 94.12 93.33 97.62 93.18 97.67 98.92 87.18 91.18 94.62 98.53 94.44 97.22 93.85 81.13 70.69 95.52 93.62 83.33 93.83 93.27 98.11 94.12 96.97 92.19 98.59 93.10 94.29 98.11 94.23 97.92 80.77 93.02 92.31 98.18 98.99 82.86 96.88 92.86 96.77 100.00 98.36 96.88 97.56 100.00 K intron_retention Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19545152_19547916 chr2R_19545151_19545152;chr2R_19547916_19547917 chr2R_19545126_19545151;chr2R_19547917_19547942 98.41 94.29 100.00 96.58 97.14 97.44 100.00 97.94 98.97 95.65 96.97 98.92 100.00 97.83 100.00 98.41 97.73 100.00 96.88 98.41 100.00 100.00 100.00 96.15 96.55 98.31 100.00 100.00 96.77 100.00 97.65 100.00 97.44 100.00 86.67 100.00 97.62 100.00 100.00 97.85 100.00 96.26 100.00 100.00 100.00 95.24 100.00 97.06 98.29 100.00 96.15 92.00 94.74 NA 96.97 100.00 100.00 100.00 K alternative_donor nudE chr3L + chr3L_9893987_9894442 chr3L_9894119_9894442 chr3L_9894443_9894534;chr3L_9893861_9893986 100.00 100.00 98.61 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.36 100.00 K jcn_only_AD RpS15Aa chrX - chrX_13231573_13231643;chrX_13231573_13231639 chrX_13231573_13231635 chrX_13231538_13231572;chrX_13231644_13231706 0.00 NA 5.00 0.00 NA 0.00 0.00 0.00 1.85 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 1.59 0.00 NA NA NA NA NA 0.00 NA NA 4.76 NA NA 0.00 NA 0.00 0.00 K alternative_acceptor eIF5,I_chrX_15882955_15883078,RI_chrX_15883163_15883424,I_chrX_15883297_15883424,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15883360_15883424;chrX_15883302_15883424;chrX_15883143_15883424 chrX_15883163_15883424 chrX_15883425_15883509;chrX_15883079_15883142 13.57 15.38 10.71 11.90 17.65 17.39 3.64 11.94 8.20 16.67 21.43 10.87 10.00 13.51 23.33 19.75 11.11 9.52 30.23 15.56 17.65 11.11 22.50 33.33 NA 20.83 23.68 17.39 10.53 9.09 13.43 17.65 10.81 5.71 10.34 13.04 17.65 26.67 15.38 6.98 6.90 10.42 11.76 14.71 21.43 4.65 18.52 6.06 12.50 16.00 12.12 38.89 23.08 23.53 13.64 11.11 28.12 6.82 K jcn_only_AA cenB1A chr3R + chr3R_18947355_18947549 chr3R_18947355_18947528 chr3R_18947059_18947354;chr3R_18947550_18947666 74.86 75.45 72.73 55.63 77.00 81.25 81.82 66.67 78.29 82.00 82.43 74.86 85.51 71.64 75.42 75.22 69.90 73.61 71.76 69.75 69.62 88.11 75.14 74.29 79.55 76.25 63.87 64.94 68.92 67.03 71.72 76.47 75.71 64.38 71.83 96.63 83.03 73.87 82.55 78.95 73.77 74.21 60.44 77.24 75.44 80.25 77.78 67.35 74.69 76.47 77.99 80.23 73.44 82.93 74.42 74.70 67.27 69.39 K intron_retention Msp-300,I_chr2L_5154189_5154247,I_chr2L_5174808_5176751,I_chr2L_5185965_5188116,snoRNA:Psi28S-2263,I_chr2L_5197634_5197866 chr2L + chr2L_5155850_5187606 chr2L_5155849_5155850;chr2L_5187606_5187607 chr2L_5155589_5155849;chr2L_5187607_5187640 11.11 NA NA NA NA NA NA NA 11.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD I_chr2L_8029734_8029787,Cka,CG7429 chr2L + chr2L_8030840_8032059;chr2L_8031338_8032059;chr2L_8031163_8032059;chr2L_8031036_8032059 chr2L_8031309_8032059 chr2L_8032060_8032641;chr2L_8030749_8030839 17.02 35.85 21.74 19.19 7.62 10.39 15.06 19.66 14.15 21.67 12.59 18.09 21.26 18.37 20.91 15.38 18.87 17.20 16.96 12.09 16.79 15.17 11.47 21.66 20.39 20.00 19.44 18.49 5.83 11.69 18.75 13.33 22.99 18.88 15.73 21.31 12.78 66.67 12.34 17.44 17.02 17.68 25.93 14.79 11.46 11.76 7.83 5.88 16.03 14.29 14.04 21.11 14.29 20.18 20.71 15.87 22.88 3.64 K intron_retention Pep,I_chr3L_17637180_17637918 chr3L - chr3L_17636827_17637078 chr3L_17636826_17636827;chr3L_17637078_17637079 chr3L_17636463_17636826;chr3L_17637079_17637179 5.88 NA NA 0.00 NA NA NA 10.81 0.00 NA NA 10.00 NA NA NA 5.88 NA NA NA 10.00 NA 6.25 NA 0.00 NA 6.67 11.76 0.00 NA NA NA NA NA NA NA NA 5.88 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 5.00 6.67 9.52 NA NA NA NA NA 0.00 NA NA K cassette Fer1HCH,I_chr3R_26212319_26213496,I_chr3R_26212319_26212460,I_chr3R_26213132_26213185 chr3R - chr3R_26212319_26213185 chr3R_26212319_26212460;chr3R_26212551_26213185 chr3R_26212461_26212550 chr3R_26212219_26212318;chr3R_26213186_26213272 0.06 0.00 0.13 0.10 0.00 0.16 0.08 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.07 0.00 0.19 0.00 0.00 0.00 0.00 0.21 0.16 0.17 0.00 0.00 0.22 0.39 0.09 0.21 0.00 0.00 0.00 0.17 0.12 0.31 0.07 0.18 0.00 0.19 0.17 0.12 0.42 0.07 0.06 0.13 0.00 0.00 0.00 0.12 0.13 0.05 0.00 K alternative_donor Rho1,I_chr2R_11990455_11992537,RI_chr2R_11991687_11992537 chr2R + chr2R_11990362_11991115;chr2R_11990814_11991115;chr2R_11990398_11991115 chr2R_11990326_11991115 chr2R_11991116_11991279;chr2R_11990232_11990325 0.77 0.90 0.81 1.09 1.00 3.39 0.93 0.57 0.67 0.00 0.00 0.36 1.03 0.58 2.50 0.47 0.75 0.00 0.49 1.02 0.00 1.09 1.82 1.05 1.59 0.95 0.77 2.53 5.80 0.00 0.56 0.00 0.00 0.40 0.00 1.75 3.80 2.08 1.19 0.00 0.00 0.35 1.21 1.33 2.00 1.03 0.88 0.00 0.30 1.05 0.00 0.97 0.00 0.00 0.63 0.94 0.58 0.00 K intron_retention Pcaf,RI_chr3L_12519486_12519541 chr3L - chr3L_12515691_12515744 chr3L_12515690_12515691;chr3L_12515744_12515745 chr3L_12515038_12515690;chr3L_12515745_12517120 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG3074,I_chr2R_18079355_18080538,I_chr2R_18079355_18089994 chr2R - chr2R_18079355_18080538 chr2R_18079361_18080538 chr2R_18080539_18080638;chr2R_18079255_18079354 100.00 NA 100.00 90.00 100.00 100.00 91.67 100.00 100.00 NA 87.50 93.75 NA 88.89 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 92.31 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 87.50 100.00 90.91 100.00 95.45 90.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 NA NA NA 100.00 100.00 100.00 NA K multi_cassette CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261460_265805 chr4_261460_263891;chr4_264212_264259;chr4_264375_265805 chr4_263892_264211;chr4_264260_264374 chr4_261360_261459;chr4_265806_265905 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA F_chr3RHet_1879085_1900358,Alg-2 chr3RHet - chr3RHet_1898930_1898983;chr3RHet_1898895_1898983;chr3RHet_1898919_1898983 chr3RHet_1898928_1898983 chr3RHet_1898984_1899090;chr3RHet_1898558_1898894 0.00 0.00 0.74 0.00 0.00 1.02 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 1.30 1.06 0.00 0.00 0.00 0.00 1.49 0.00 0.49 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 1.25 0.00 1.59 0.00 0.00 0.00 0.00 0.00 K intron_retention musashi,C_chr3R_21387506_21389801 chr3R + chr3R_21342072_21344982 chr3R_21342071_21342072;chr3R_21344982_21344983 chr3R_21341861_21342071;chr3R_21344983_21345451 17.16 21.43 NA 14.29 NA NA 12.12 9.68 14.29 NA 18.75 11.11 12.50 19.05 NA 28.57 19.05 NA 17.65 21.43 25.00 NA NA NA NA NA NA NA NA 13.33 NA NA 16.67 18.52 NA NA NA NA NA NA NA 15.38 20.00 NA NA NA NA 0.00 14.29 NA NA NA NA NA 25.00 NA NA NA K alternative_acceptor RecQ5 chr3L - chr3L_14623293_14623619 chr3L_14623545_14623619 chr3L_14623620_14624918;chr3L_14622841_14623292 7.83 7.32 10.00 4.17 3.12 4.00 32.43 11.48 6.98 7.14 0.00 7.14 11.11 9.09 2.50 13.89 10.34 9.68 6.67 5.77 0.00 16.00 3.57 10.81 14.29 9.38 4.08 3.03 12.00 4.17 11.90 14.29 12.50 10.64 5.13 13.64 11.11 7.14 3.57 12.90 NA 10.53 7.14 8.33 0.00 14.29 6.25 7.14 9.38 12.12 5.26 15.38 3.12 4.00 8.89 9.09 2.44 0.00 K intron_retention I_chr3R_23749027_23749091,CG5508,E_chr3R_23755071_23758533 chr3R + chr3R_23757748_23757811 chr3R_23757747_23757748;chr3R_23757811_23757812 chr3R_23757410_23757747;chr3R_23757812_23758121 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4839655;chr3R_4839215_4839561;chr3R_4839215_4839851;chr3R_4839215_4839728;chr3R_4839215_4839799 chr3R_4839215_4839889 chr3R_4839038_4839214;chr3R_4839890_4839901 16.67 0.00 16.67 18.18 20.00 44.44 12.50 36.36 28.57 33.33 0.00 9.09 14.29 50.00 0.00 8.33 16.67 16.67 14.29 20.00 33.33 0.00 12.50 16.67 0.00 28.57 0.00 0.00 25.00 0.00 10.00 50.00 16.67 20.00 25.00 0.00 25.00 25.00 25.00 0.00 25.00 23.53 36.36 20.00 0.00 11.11 20.00 11.11 22.22 0.00 16.67 16.67 0.00 40.00 22.22 0.00 0.00 0.00 N jcn_only_AD CG10353,I_chrX_11775936_11778830,I_chrX_11778617_11778830,RI_chrX_11780885_11780988 chrX - chrX_11775936_11777234;chrX_11775936_11776058;chrX_11775936_11777133;chrX_11775936_11776142 chrX_11775936_11777220 chrX_11775836_11775935;chrX_11777235_11777654 25.33 19.30 35.82 39.51 39.13 22.22 26.58 16.00 21.88 8.00 13.64 16.81 13.33 12.90 40.70 26.97 30.43 27.45 37.84 25.62 18.18 24.44 25.30 24.24 31.48 45.45 26.92 54.55 33.80 25.40 22.94 29.55 28.57 28.57 20.00 31.82 20.19 23.21 22.86 17.36 37.78 27.12 33.96 26.87 40.62 25.33 13.64 19.23 24.62 36.11 17.00 25.00 17.65 27.50 27.42 21.43 23.08 20.41 K alternative_last_exon Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5006553_5009240;chr2R_5006553_5007257 chr2R_5006553_5008598,chr2R_5006553_5008568,chr2R_5006553_5008282,chr2R_5006553_5007804 chr2R_5009241_5009953;chr2R_5007258_5007336 chr2R_5008599_5008637 chr2R_5006405_5006552 32.43 31.03 36.36 10.34 17.65 27.78 36.36 18.18 28.57 41.18 35.71 67.80 15.79 15.79 33.33 19.35 29.41 27.27 24.00 28.57 28.57 41.18 43.59 41.94 56.00 20.00 30.43 56.25 52.63 36.36 25.00 36.36 48.00 28.57 34.62 50.00 43.90 52.94 45.45 36.84 27.78 29.27 21.05 45.83 57.58 22.58 37.93 33.33 23.08 25.00 37.14 34.78 31.58 30.30 24.00 33.33 32.43 17.86 K intron_retention CG9360 chrX - chrX_11657857_11657938 chrX_11657856_11657857;chrX_11657938_11657939 chrX_11657504_11657856;chrX_11657939_11658634 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.74 1.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 K intron_retention CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806824_22807254 chr3R_22806823_22806824;chr3R_22807254_22807255 chr3R_22806674_22806823;chr3R_22807255_22807473 56.25 53.57 56.67 63.08 69.23 55.56 58.33 61.11 57.81 NA 70.00 56.14 60.00 63.16 61.54 47.44 51.43 55.00 56.52 55.56 40.00 38.46 42.86 50.00 NA 66.67 75.00 NA NA NA 60.00 NA 66.67 55.93 56.25 NA NA NA NA 65.00 88.89 49.18 50.00 56.25 NA 47.62 35.71 47.06 61.40 NA 48.15 NA NA NA 51.85 NA 42.86 57.14 K intron_retention CG13893,I_chr3L_600913_601954 chr3L - chr3L_600665_600726 chr3L_600664_600665;chr3L_600726_600727 chr3L_600547_600664;chr3L_600727_600770 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.72 0.00 0.00 1.82 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention CG2052,RI_chr4_407611_409383 chr4 - chr4_407611_407679 chr4_407610_407611;chr4_407679_407680 chr4_407533_407610;chr4_407680_407727 11.90 NA 0.00 NA NA NA NA 9.52 26.32 NA NA 14.29 NA NA 14.29 NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA 18.18 NA NA NA NA NA NA NA NA NA K jcn_only_AD RI_chrX_502548_513324,CG13366,I_chrX_505719_505889,I_chrX_508729_508806,I_chrX_509727_511477,I_chrX_510004_511407,I_chrX_513176_513324,I_chrX_513519_513631 chrX - chrX_505719_505889 chrX_505719_505783 chrX_505619_505718;chrX_505890_505989 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 95.65 100.00 NA 100.00 96.43 NA 100.00 100.00 100.00 100.00 97.73 NA 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 97.67 97.62 100.00 100.00 100.00 100.00 100.00 95.65 100.00 93.10 100.00 97.37 100.00 K alternative_acceptor CG11739,REI_chr3R_205547_205633,RI_chr3R_205772_205830,I_chr3R_207254_207600 chr3R + chr3R_205547_205649 chr3R_205547_205633 chr3R_205447_205546;chr3R_205650_205733 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.91 0.90 0.00 2.33 0.00 0.00 0.00 1.44 0.93 0.69 0.00 1.43 0.00 0.00 0.00 0.56 0.87 0.00 0.00 0.00 0.00 1.75 1.00 0.00 0.00 0.68 K intron_retention CG1623,I_chr2R_5717365_5717896 chr2R - chr2R_5717365_5720983 chr2R_5717364_5717365;chr2R_5720983_5720984 chr2R_5717265_5717364;chr2R_5720984_5721052 3.33 0.00 4.00 0.00 2.17 0.00 4.65 0.00 3.33 6.67 5.13 6.67 4.76 8.51 14.29 7.14 0.00 7.41 3.85 5.06 6.25 4.08 3.57 3.85 0.00 2.94 0.00 0.00 0.00 5.71 0.00 0.00 0.00 9.52 0.00 0.00 3.03 4.00 0.00 5.41 0.00 4.05 16.67 8.33 0.00 8.00 4.35 0.00 3.12 15.00 5.41 0.00 0.00 0.00 9.09 3.23 0.00 1.75 K cassette CG8709,I_chr2R_4027128_4027182,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4029326_4029603 chr2R_4029326_4029395;chr2R_4029534_4029603 chr2R_4029396_4029533 chr2R_4028186_4029325;chr2R_4029604_4029699 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 98.94 100.00 95.45 100.00 98.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.82 100.00 98.44 100.00 100.00 100.00 98.91 100.00 100.00 100.00 100.00 100.00 100.00 98.57 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Atx-1,Atx-1_CG4542,CG4542 chrX + chrX_6715194_6715248 chrX_6715193_6715194;chrX_6715248_6715249 chrX_6715188_6715193;chrX_6715249_6716163 0.00 0.00 4.55 16.67 4.35 0.00 0.00 5.71 5.41 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 5.71 NA NA 0.00 4.76 NA 13.33 0.00 0.00 0.00 NA 9.76 0.00 NA 0.00 0.00 NA 4.08 0.00 2.22 5.88 NA 0.00 10.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 K cassette CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2436229_2459590 chr3L_2436229_2439498;chr3L_2439831_2459590 chr3L_2439499_2439830 chr3L_2436209_2436228;chr3L_2459591_2459690 100.00 100.00 97.96 100.00 100.00 100.00 100.00 98.44 100.00 100.00 100.00 98.80 97.14 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.28 100.00 98.73 100.00 100.00 99.48 100.00 99.02 100.00 100.00 100.00 100.00 98.51 99.06 99.39 98.53 99.25 99.31 98.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.63 98.92 100.00 100.00 100.00 100.00 98.15 100.00 100.00 K alternative_acceptor Rox8,I_chr3R_19872211_19872659,I_chr3R_19872214_19872630,I_chr3R_19872214_19872636,I_chr3R_19872214_19872838,I_chr3R_19876189_19876240 chr3R - chr3R_19872211_19873682 chr3R_19872214_19873682 chr3R_19873683_19873709;chr3R_19872114_19872210 85.71 NA 66.67 90.00 NA NA NA 85.71 83.33 NA NA 88.89 NA NA NA NA NA NA 75.00 70.59 NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA 92.86 NA NA NA NA NA NA NA NA NA K jcn_only_AA msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585733_2586036 chr3L_2585739_2586036 chr3L_2586037_2586103;chr3L_2585639_2585732 95.00 NA NA NA NA NA 89.66 NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA 85.19 NA NA NA NA NA NA NA NA NA NA K intron_retention CG17337 chr2R + chr2R_1587494_1587547 chr2R_1587493_1587494;chr2R_1587547_1587548 chr2R_1587242_1587493;chr2R_1587548_1587815 0.00 0.00 0.00 0.00 0.00 1.49 0.00 1.20 0.69 6.25 0.00 0.00 0.00 0.00 0.00 1.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 2.70 2.50 0.00 0.00 0.00 0.00 1.57 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.98 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.19 0.00 K intron_retention Cp1,Aats-phe chr2R + chr2R_9849842_9854259 chr2R_9849841_9849842;chr2R_9854259_9854260 chr2R_9849732_9849841;chr2R_9854260_9854474 0.35 0.33 0.14 0.32 0.33 0.32 0.44 0.38 0.37 0.11 0.44 0.63 0.63 0.60 0.34 0.46 0.40 0.27 0.31 0.37 0.22 0.62 0.34 0.37 0.63 0.00 0.73 0.47 0.35 0.30 0.52 0.38 0.32 0.38 0.58 0.45 0.38 0.39 0.25 0.40 0.33 0.31 0.36 0.27 0.27 0.30 0.29 0.28 0.46 0.31 0.35 0.41 0.27 0.17 0.35 0.17 0.30 0.31 K alternative_acceptor ena chr2R + chr2R_15047541_15047756;chr2R_15047541_15047684;chr2R_15047541_15047753 chr2R_15047541_15047681 chr2R_15047496_15047540;chr2R_15047757_15048407 37.17 35.04 33.01 40.00 38.53 38.00 37.23 31.93 37.93 28.79 42.73 37.44 39.39 35.37 35.07 42.05 35.35 35.59 37.50 36.16 37.17 45.39 35.40 39.64 37.35 36.90 38.68 32.56 36.99 37.76 32.99 38.46 40.29 36.42 35.37 39.77 34.32 43.00 37.80 35.50 37.74 37.92 31.65 38.02 42.27 43.75 39.24 38.79 34.50 38.27 35.40 36.21 34.33 35.48 33.10 35.71 36.51 32.08 N cassette CG1161,RI_chr3R_1181273_1181459 chr3R + chr3R_1181273_1182146 chr3R_1181273_1181555;chr3R_1181665_1182146 chr3R_1181556_1181664 chr3R_1181173_1181272;chr3R_1182147_1182246 100.00 100.00 100.00 100.00 100.00 100.00 89.61 100.00 95.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.19 100.00 94.21 93.18 93.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 70.93 100.00 100.00 100.00 100.00 100.00 100.00 93.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.39 100.00 100.00 100.00 100.00 100.00 K intron_retention ytr,eIF6,RI_chr2R_19738391_19738783 chr2R - chr2R_19736323_19738093 chr2R_19736322_19736323;chr2R_19738093_19738094 chr2R_19734681_19736322;chr2R_19738094_19738171 2.47 1.60 3.61 6.48 6.25 1.06 6.78 10.53 1.92 2.45 5.88 3.77 9.76 7.84 NA 7.50 4.41 0.00 2.08 3.17 4.88 2.17 2.33 2.35 2.67 4.76 5.00 3.40 0.85 3.11 0.00 2.04 1.62 3.94 2.11 1.85 1.14 1.54 2.25 4.26 1.30 3.57 1.43 3.75 1.59 2.22 2.49 2.91 1.33 2.36 4.69 1.52 2.68 1.40 4.08 0.00 3.17 2.11 K alternative_last_exon CG31619 chr2L + chr2L_21717673_21719513 chr2L_21717673_21717740 chr2L_21719514_21719643 chr2L_21717741_21718083 chr2L_21717561_21717672 4.48 5.83 7.81 4.38 3.57 6.35 17.11 8.80 6.99 6.58 50.00 4.24 36.36 7.14 4.48 8.33 5.66 4.08 7.69 5.84 28.57 3.57 5.74 4.27 5.06 5.33 4.71 3.70 2.00 3.00 5.13 2.13 1.54 7.94 4.41 1.64 2.83 3.70 2.00 2.48 3.09 4.65 5.66 1.54 0.97 2.13 1.71 1.48 5.88 10.61 3.88 4.23 0.66 3.96 5.43 5.26 5.66 2.62 K jcn_only_AD Keap1 chr3R - chr3R_12902616_12905144;chr3R_12902616_12905594 chr3R_12902616_12905148 chr3R_12902299_12902615;chr3R_12905595_12905636 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention mit(1)15 chrX + chrX_2499686_2499746 chrX_2499685_2499686;chrX_2499746_2499747 chrX_2498224_2499685;chrX_2499747_2500860 0.00 0.00 1.92 0.00 2.70 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.41 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor lola,I_chr2R_6375932_6376866,RI_chr2R_6376649_6376866,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6375932_6419543 chr2R_6375932_6376866 chr2R_6375832_6375931;chr2R_6419544_6419624 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chrX_1962457_1964222,CG16903 chrX - chrX_1972808_1972864 chrX_1972807_1972808;chrX_1972864_1972865 chrX_1972324_1972807;chrX_1972865_1973677 0.00 0.00 1.27 0.00 0.00 1.61 0.00 0.00 0.76 0.00 0.00 0.88 0.00 0.00 2.67 0.00 0.00 0.00 1.33 0.00 0.00 0.00 1.15 0.00 0.00 3.66 5.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 1.54 0.61 0.00 0.00 0.95 1.80 0.00 0.00 2.21 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.94 K jcn_only_AD Slh,CR_chr2L_2491440_2491508 chr2L - chr2L_2491443_2491518 chr2L_2491443_2491512 chr2L_2490733_2491442;chr2L_2491519_2491608 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Fer1HCH,I_chr3R_26212319_26213496,I_chr3R_26213132_26213185 chr3R - chr3R_26213273_26213496;chr3R_26213365_26213496 chr3R_26213325_26213496 chr3R_26213497_26213534;chr3R_26213186_26213272 56.77 56.95 52.65 41.43 66.55 55.79 69.63 57.92 64.45 50.69 60.37 50.86 75.15 63.54 51.31 59.38 61.71 51.68 55.70 48.02 59.41 57.78 53.58 59.13 66.58 56.77 61.39 58.05 59.73 56.70 52.62 62.06 37.30 52.69 61.01 37.74 53.23 49.72 57.66 60.29 60.15 54.31 58.41 48.17 54.17 63.69 56.56 62.22 47.60 53.87 64.87 55.73 52.40 54.82 57.49 49.66 64.21 50.75 K jcn_only_AA mael chr3L + chr3L_22717786_22717839 chr3L_22717786_22717830 chr3L_22717584_22717785;chr3L_22717840_22718029 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.67 0.00 0.00 4.76 0.00 3.45 3.45 NA 0.00 0.00 2.13 0.00 1.96 0.00 0.00 4.08 0.00 0.00 0.00 0.00 4.76 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 0.00 2.08 K intron_retention CG10306 chr2R + chr2R_17572952_17573017 chr2R_17572951_17572952;chr2R_17573017_17573018 chr2R_17572780_17572951;chr2R_17573018_17573823 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.22 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD rho-7,noncoding_6143 chr2R - chr2R_7876069_7876127 chr2R_7876069_7876123 chr2R_7876008_7876068;chr2R_7876128_7876254 4.45 4.35 2.27 NA NA 3.33 3.33 2.63 1.79 2.78 0.00 10.00 3.70 2.94 2.27 0.00 4.55 0.00 0.00 6.90 4.00 18.42 3.66 5.08 17.86 0.00 6.67 1.67 15.22 8.89 25.93 1.92 6.38 2.17 13.04 8.70 1.89 7.27 3.57 8.42 13.16 3.03 NA 3.85 6.56 4.55 2.04 15.28 1.61 12.50 4.60 9.68 4.17 7.27 10.81 12.66 6.94 6.25 K cassette Zyx102EF,I_chr4_1078380_1078835,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1078380_1078835 chr4_1078380_1078432;chr4_1078644_1078835 chr4_1078433_1078643 chr4_1078280_1078379;chr4_1078836_1078848 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.78 100.00 NA 92.31 97.30 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 91.67 94.44 94.44 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 K intron_retention I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545686_17545850 chr2R_17545685_17545686;chr2R_17545850_17545851 chr2R_17545628_17545685;chr2R_17545851_17545985 57.14 46.15 NA 57.14 NA NA 65.00 60.00 68.18 69.23 60.00 53.85 33.33 60.00 NA 41.67 NA 88.89 NA 41.67 NA 73.33 43.75 46.67 87.50 50.00 41.18 NA 72.22 40.00 45.45 63.64 75.00 72.73 NA NA 50.00 60.00 41.18 54.55 66.67 57.14 NA 59.09 66.67 70.59 41.67 91.67 37.50 50.00 45.45 60.00 NA NA NA 41.67 34.62 81.25 N alternative_acceptor CG12207,I_chr3R_10115172_10115963,RE_chr3R_10124392_10124511 chr3R + chr3R_10126741_10126965 chr3R_10126741_10126949 chr3R_10126142_10126740;chr3R_10126966_10127961 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 67.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Tsp96F chr3R - chr3R_21701597_21701666 chr3R_21701596_21701597;chr3R_21701666_21701667 chr3R_21701381_21701596;chr3R_21701667_21701846 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 3.23 0.00 NA 0.00 0.00 NA 0.00 0.00 3.23 0.00 20.00 0.00 8.33 NA 0.00 25.93 NA NA 0.00 0.00 NA 0.00 3.03 NA 0.00 0.00 0.00 3.45 6.82 0.00 4.88 NA NA 17.65 12.50 0.00 11.76 0.00 NA 0.00 NA NA NA 0.00 0.00 26.67 25.00 K intron_retention Mtp,I_chr2L_20922609_20922685,I_chr2L_20922613_20922685 chr2L - chr2L_20922776_20922830 chr2L_20922775_20922776;chr2L_20922830_20922831 chr2L_20922686_20922775;chr2L_20922831_20922858 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 90.91 NA 91.67 100.00 NA NA 100.00 91.67 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA 88.89 NA NA 90.00 NA 100.00 NA 93.33 NA 88.89 NA NA 100.00 100.00 NA NA NA NA 100.00 NA NA 100.00 K intron_retention I_chr2R_19932706_19933121,gammaSnap chr2R - chr2R_19934845_19935027 chr2R_19934844_19934845;chr2R_19935027_19935028 chr2R_19934579_19934844;chr2R_19935028_19935071 0.00 0.00 1.32 2.67 3.57 0.00 2.76 0.00 2.29 0.00 0.00 1.65 4.26 0.00 0.00 1.55 0.00 0.00 0.00 1.40 0.00 0.00 0.00 0.00 0.00 1.18 1.22 0.00 2.33 0.00 2.41 0.00 0.00 4.00 4.44 2.56 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 3.03 5.41 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention CG8229,CG33199 chr2R - chr2R_4836447_4836515 chr2R_4836446_4836447;chr2R_4836515_4836516 chr2R_4835619_4836446;chr2R_4836516_4836564 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA 40.00 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA 50.00 K jcn_only_AA CG3663,CG3683 chr2R + chr2R_20549521_20549598 chr2R_20549521_20549577 chr2R_20549454_20549520;chr2R_20549599_20549664 100.00 100.00 100.00 100.00 90.62 100.00 98.15 96.08 100.00 NA 96.97 97.92 95.00 100.00 100.00 96.55 97.14 100.00 100.00 98.88 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 95.00 98.31 100.00 100.00 97.78 100.00 98.18 100.00 100.00 100.00 95.35 96.49 100.00 98.33 100.00 97.73 100.00 100.00 97.22 100.00 97.87 100.00 100.00 K intron_retention CG32685,CREI_chrX_9967445_9972518 chrX - chrX_9968099_9968170 chrX_9968098_9968099;chrX_9968170_9968171 chrX_9967910_9968098;chrX_9968171_9968359 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Kap3 chrX - chrX_11231294_11231361 chrX_11231297_11231361 chrX_11231362_11231367;chrX_11231160_11231293 100.00 NA 100.00 100.00 NA 100.00 100.00 90.00 95.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 93.33 100.00 100.00 100.00 100.00 NA 100.00 100.00 87.50 100.00 100.00 92.31 100.00 100.00 NA 100.00 NA 100.00 NA NA NA NA 100.00 100.00 100.00 100.00 NA NA 94.12 100.00 NA NA K jcn_only_AA I_chr3L_20775431_20775486,CG11396 chr3L - chr3L_20780810_20780890 chr3L_20780814_20780890 chr3L_20780891_20781177;chr3L_20780229_20780809 90.12 NA NA NA NA NA NA NA 91.67 NA NA NA NA NA NA NA NA NA NA 86.67 NA NA 84.62 NA NA NA 96.15 NA 86.96 92.31 NA NA 88.57 NA NA 80.00 80.00 100.00 NA NA 85.19 NA NA NA NA NA NA 93.94 NA NA 92.31 NA NA NA NA NA NA 96.88 N alternative_acceptor Aats-val,I_chr2R_9088330_9088393,I_chr2R_9088412_9088502 chr2R + chr2R_9088330_9088517;chr2R_9088330_9088502 chr2R_9088330_9088393 chr2R_9088312_9088329;chr2R_9088518_9088602 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4853,CG4866 chr2R + chr2R_13401922_13402084 chr2R_13401921_13401922;chr2R_13402084_13402085 chr2R_13401783_13401921;chr2R_13402085_13403034 4.20 0.00 4.26 6.62 0.00 5.83 7.44 4.17 2.69 2.38 2.44 3.79 0.00 4.17 4.35 3.67 3.61 6.17 4.12 5.10 2.60 7.89 4.92 2.63 4.30 4.81 6.57 10.61 6.67 1.95 6.45 1.46 4.41 3.50 6.47 8.13 5.32 3.26 2.17 2.14 5.32 4.49 7.25 2.50 1.05 3.05 3.66 2.84 3.26 10.17 6.21 4.92 8.20 1.37 4.20 5.06 4.69 1.84 K jcn_only_AD Nhe1,I_chr2L_105456_106437,I_chr2L_105916_106437 chr2L - chr2L_105456_106437 chr2L_105456_105511 chr2L_105391_105455;chr2L_106438_106537 100.00 100.00 NA 87.10 NA NA 100.00 100.00 100.00 NA NA 100.00 NA 96.15 96.00 100.00 NA 100.00 100.00 98.48 NA 100.00 96.55 NA NA 100.00 100.00 NA 100.00 94.12 100.00 NA 98.33 100.00 95.83 NA 95.45 NA 95.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 97.50 NA 100.00 NA NA NA 100.00 96.43 96.67 98.15 K jcn_only_AA Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5006553_5008282;chr2R_5006553_5007804;chr2R_5006553_5008598 chr2R_5006553_5008568 chr2R_5006405_5006552;chr2R_5008599_5008637 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA 0.00 0.00 NA K intron_retention RpS27A,Ip259 chr2L + chr2L_10408387_10409710 chr2L_10408386_10408387;chr2L_10409710_10409711 chr2L_10408376_10408386;chr2L_10409711_10410051 0.14 0.00 0.23 0.32 0.11 0.00 0.19 0.18 0.22 0.33 0.13 0.13 0.13 0.16 0.09 0.18 0.00 0.00 0.10 0.14 0.17 0.26 0.54 0.22 0.00 0.00 1.14 2.92 0.82 0.71 0.00 0.00 0.00 0.07 0.65 0.67 0.00 1.20 0.18 0.38 0.00 0.11 0.00 0.00 0.00 0.68 0.23 0.00 0.15 0.13 1.91 0.00 0.36 0.00 0.05 0.00 0.14 0.38 K jcn_only_AD Spred,I_chr2R_10655876_10656868 chr2R - chr2R_10650580_10651335 chr2R_10650580_10650923 chr2R_10650424_10650579;chr2R_10651336_10651504 2.04 0.00 0.00 2.78 3.85 1.72 9.72 7.25 2.42 0.00 2.00 5.56 2.04 3.23 2.94 9.09 23.33 0.00 0.00 3.54 2.17 0.00 1.18 0.00 5.88 4.26 0.00 58.62 0.00 4.84 0.00 2.33 0.00 1.25 5.71 3.51 1.25 1.35 1.32 3.45 0.00 0.00 2.13 3.57 2.04 1.23 3.39 1.56 3.41 13.04 3.37 1.89 1.85 0.00 1.56 2.74 0.00 2.44 K alternative_acceptor l(2)NC136,I_chr2R_1545723_1546024 chr2R - chr2R_1545003_1545147;chr2R_1545087_1545147 chr2R_1545081_1545147 chr2R_1545148_1545722;chr2R_1544877_1545002 4.35 4.88 2.70 2.56 4.88 5.41 2.90 2.56 2.11 5.56 0.00 2.70 0.00 5.13 3.92 3.23 4.35 4.76 4.44 2.41 2.50 6.25 7.55 3.64 5.71 6.00 6.52 15.38 7.41 8.00 1.59 6.45 8.70 2.74 0.00 0.00 2.00 6.06 2.50 3.77 7.41 2.27 0.00 7.14 7.14 4.76 4.65 8.33 2.41 3.64 0.00 5.26 6.45 3.12 3.92 4.88 2.82 6.45 K alternative_acceptor l(1)G0196,I_chrX_21900456_21904601 chrX + chrX_21898150_21898203;chrX_21898150_21898212 chrX_21898150_21898215 chrX_21897878_21898149;chrX_21898216_21898384 29.27 31.03 25.00 29.27 32.00 19.23 38.24 17.95 30.91 40.00 26.67 26.67 40.91 35.71 39.02 27.27 24.00 36.00 36.36 36.84 29.41 14.29 13.89 20.83 31.25 17.39 20.00 30.77 11.11 35.00 28.57 16.67 50.00 21.95 21.05 35.29 32.43 28.57 28.00 29.63 14.29 28.57 23.81 31.03 36.36 39.13 33.33 60.00 27.27 33.33 24.14 36.84 11.11 28.57 28.57 30.77 27.78 41.67 K alternative_donor Traf-like,I_chrX_16309163_16309641,I_chrX_16309212_16309689,I_chrX_16309561_16309641,I_chrX_16309561_16309689,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16309561_16309689;chrX_16309619_16309689 chrX_16309163_16309689 chrX_16309690_16309741;chrX_16309112_16309162 0.00 0.00 0.00 3.70 0.00 0.00 0.00 1.96 1.61 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 3.23 4.35 4.17 6.25 0.00 0.00 0.00 0.00 0.00 1.72 5.88 8.33 0.00 0.00 5.00 3.33 0.00 0.00 3.23 0.00 1.96 0.00 0.00 0.00 0.00 6.25 3.57 0.00 0.00 3.45 5.00 0.00 0.00 0.00 0.00 0.00 3.70 K cassette Su(z)12 chr3L - chr3L_19912391_19913253 chr3L_19912391_19912458;chr3L_19912621_19913253 chr3L_19912459_19912620 chr3L_19911385_19912390;chr3L_19913254_19914086 53.70 58.97 66.67 9.30 46.15 62.07 45.00 55.26 56.47 28.57 55.17 56.92 55.56 86.67 47.37 59.38 58.33 53.33 59.09 44.00 41.94 40.35 52.17 60.00 45.45 50.00 55.56 24.14 51.52 58.82 48.28 53.33 40.00 53.70 39.47 43.75 63.33 56.76 47.69 67.92 36.84 49.35 66.67 65.52 38.18 56.82 65.00 37.84 59.02 56.90 45.45 50.00 62.50 47.92 58.33 51.11 64.10 54.41 K cassette CG15822,F_chr3L_2157814_2158246 chr3L - chr3L_2158997_2160336 chr3L_2158997_2160104;chr3L_2160280_2160336 chr3L_2160105_2160279 chr3L_2158800_2158996;chr3L_2160337_2160371 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention shtd chrX - chrX_15355079_15355136 chrX_15355078_15355079;chrX_15355136_15355137 chrX_15354917_15355078;chrX_15355137_15355260 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.98 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AA CG12895 chr2R - chr2R_6324756_6324824 chr2R_6324769_6324824 chr2R_6324825_6324905;chr2R_6324587_6324755 100.00 NA 95.83 94.87 96.43 93.10 100.00 100.00 98.15 NA 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 95.65 98.25 NA NA NA 100.00 NA 91.67 NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA 100.00 NA NA NA 97.67 NA NA NA 100.00 NA 93.33 NA 100.00 100.00 K intron_retention gbb chr2R + chr2R_19739129_19739205 chr2R_19739128_19739129;chr2R_19739205_19739206 chr2R_19739106_19739128;chr2R_19739206_19740772 98.53 98.90 98.04 98.68 93.62 97.44 90.62 97.30 98.52 100.00 93.75 94.34 100.00 90.91 98.36 100.00 93.88 100.00 96.92 95.54 97.96 97.17 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 98.53 98.33 97.06 91.67 97.56 100.00 100.00 100.00 98.81 98.84 100.00 96.23 94.59 100.00 98.11 98.85 100.00 97.14 96.26 100.00 100.00 100.00 97.78 98.68 96.88 100.00 100.00 97.67 K jcn_only_AD CG31716,I_chr2L_10397163_10398034,RI_chr2L_10397195_10398034,I_chr2L_10397648_10398034 chr2L + chr2L_10396850_10398034;chr2L_10396922_10398034 chr2L_10396983_10398034 chr2L_10398035_10398134;chr2L_10396810_10396849 97.22 90.48 94.44 96.43 100.00 100.00 97.96 96.90 97.83 NA 93.10 97.41 96.97 95.77 97.83 97.64 93.10 96.15 93.75 96.97 96.97 96.55 96.67 97.22 100.00 100.00 96.30 NA NA 100.00 97.87 NA 100.00 98.36 96.55 94.59 97.22 96.15 93.55 100.00 NA 96.55 98.28 100.00 NA 100.00 NA 96.97 100.00 100.00 98.70 100.00 NA NA 98.18 100.00 96.43 NA K alternative_acceptor EI_chr3R_4647896_4648190,CG8379 chr3R + chr3R_4650612_4650676 chr3R_4650612_4650673 chr3R_4650410_4650611;chr3R_4650677_4651130 40.72 41.38 36.84 35.90 52.63 42.11 28.57 47.37 36.67 42.86 36.36 45.45 30.43 52.38 41.18 29.73 NA 38.89 35.00 39.44 46.15 42.31 39.29 40.43 44.44 53.33 34.21 40.54 44.83 53.33 46.67 36.36 33.33 43.33 48.28 33.33 44.68 33.33 37.50 42.86 41.18 36.17 43.75 46.34 46.15 39.39 33.33 40.91 39.29 44.44 37.29 48.39 39.29 52.63 47.62 32.14 34.09 37.14 K alternative_acceptor CG9855,RI_chr3R_222522_222581,RI_chr3R_222525_222604,I_chr3R_223384_223429 chr3R - chr3R_222522_222581;chr3R_222525_222581 chr3R_222528_222581 chr3R_222582_222650;chr3R_222457_222521 8.57 7.14 4.55 9.76 5.88 13.64 6.25 8.33 10.64 4.17 5.26 11.43 5.88 12.00 10.00 3.70 14.29 9.52 8.70 11.63 10.53 9.80 6.06 9.38 4.55 0.00 8.33 14.29 10.42 3.12 11.11 8.57 9.30 6.45 5.26 3.57 9.38 3.70 2.94 8.93 8.70 4.44 5.00 3.45 13.64 9.80 13.64 8.00 13.04 9.38 6.67 4.35 9.38 7.41 3.85 5.71 11.11 11.54 N alternative_acceptor orb2,I_chr3L_8942860_8947477 chr3L - chr3L_8937621_8940927 chr3L_8939541_8940927 chr3L_8940928_8940989;chr3L_8935392_8937620 53.85 75.00 42.86 42.86 50.00 40.00 55.56 50.00 40.00 50.00 75.00 87.50 60.00 75.00 40.00 71.43 60.00 100.00 75.00 58.33 50.00 41.67 54.55 66.67 40.00 40.00 60.00 53.85 46.15 20.00 50.00 75.00 29.41 55.56 50.00 50.00 31.25 28.57 60.00 53.33 87.50 41.67 50.00 45.45 83.33 70.00 55.56 45.45 55.56 90.00 45.45 37.50 50.00 85.71 75.00 83.33 75.00 87.50 K intron_retention CG3812 chrX + chrX_12659546_12661001 chrX_12659545_12659546;chrX_12661001_12661002 chrX_12659301_12659545;chrX_12661002_12661387 90.00 75.00 92.86 94.44 100.00 90.91 88.89 87.10 91.84 NA 77.78 84.62 93.75 87.50 85.71 90.62 95.45 90.91 85.71 95.83 NA NA 60.00 NA NA 93.33 91.67 NA NA 88.89 93.33 NA 88.89 96.55 80.00 77.78 NA NA NA 90.00 NA 90.32 88.24 92.31 NA 63.64 NA NA 92.31 NA 76.92 88.89 NA NA 93.75 NA NA 90.00 K intron_retention gwl chr3R + chr3R_14574012_14574387 chr3R_14574011_14574012;chr3R_14574387_14574388 chr3R_14573853_14574011;chr3R_14574388_14575390 6.35 8.70 NA 7.41 NA NA 0.00 0.00 9.38 NA 0.00 15.00 25.00 NA 9.52 NA NA NA NA 5.26 NA NA 9.52 0.00 6.25 NA 3.57 NA NA 0.00 NA NA 11.76 11.11 7.14 5.56 18.18 0.00 0.00 0.00 NA 8.57 NA NA NA 10.00 NA 17.65 6.45 NA 7.41 0.00 NA 0.00 NA 0.00 NA 0.00 K jcn_only_AA I_chr3R_22696095_22697413,Rb97D chr3R - chr3R_22699721_22699792 chr3R_22699739_22699792 chr3R_22699793_22700512;chr3R_22699582_22699720 59.48 60.00 38.89 58.93 66.67 46.15 50.98 48.98 60.38 61.54 NA 48.15 NA NA 47.06 67.86 NA 28.00 66.67 55.95 48.39 66.00 56.45 51.85 48.57 55.56 62.22 83.33 73.33 62.16 NA 65.52 65.31 44.23 65.62 28.57 46.38 67.31 54.39 57.35 NA 50.00 NA 78.69 68.75 48.28 49.06 77.78 67.74 60.98 66.10 66.67 62.86 58.97 53.12 60.00 72.09 56.25 K intron_retention Rcd1 chr2R - chr2R_10036685_10036738 chr2R_10036684_10036685;chr2R_10036738_10036739 chr2R_10035770_10036684;chr2R_10036739_10037323 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.08 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG9399,I_chr3R_5403032_5403329 chr3R - chr3R_5399318_5399863;chr3R_5399255_5399863 chr3R_5399229_5399863 chr3R_5399864_5399874;chr3R_5399076_5399228 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 5.88 0.00 NA NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 K intron_retention cal1 chr3R + chr3R_12914205_12914261 chr3R_12914204_12914205;chr3R_12914261_12914262 chr3R_12914074_12914204;chr3R_12914262_12917680 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 3.33 NA 8.70 0.00 0.00 NA NA NA NA 8.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 5.56 NA NA NA NA NA NA 0.00 K jcn_only_AD RpS19a chrX + chrX_16531961_16532265 chrX_16531983_16532265 chrX_16532266_16532336;chrX_16531912_16531960 4.71 6.36 5.19 2.91 6.63 5.28 13.37 3.72 7.51 3.93 6.78 7.35 11.77 10.66 4.71 11.52 5.37 7.32 5.60 4.19 7.52 2.76 4.17 4.42 6.15 5.53 7.32 3.55 5.43 2.08 6.06 2.76 2.16 4.33 4.50 2.81 14.21 2.73 3.59 1.41 3.21 3.79 7.41 2.54 2.28 3.19 6.00 2.90 4.55 10.32 3.49 5.43 1.76 4.71 4.03 9.09 9.35 2.58 K intron_retention Rbcn-3A chrX - chrX_6137129_6137186 chrX_6137128_6137129;chrX_6137186_6137187 chrX_6136864_6137128;chrX_6137187_6137543 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8088454_8089393 chr2L_8088454_8088664;chr2L_8088716_8089393 chr2L_8088665_8088715 chr2L_8088448_8088453;chr2L_8089394_8089493 0.00 NA NA 0.00 NA NA 0.00 0.00 4.17 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA 0.00 NA NA NA 3.85 NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA NA NA K multi_cassette CG11266,RI_chr2L_7033019_7033182,RI_chr2L_7033019_7034180,RI_chr2L_7033019_7034764,I_chr2L_7034274_7034764,I_chr2L_7034274_7035406,RI_chr2L_7034911_7035074,I_chr2L_7051093_7051366 chr2L + chr2L_7033019_7035074 chr2L_7033019_7034198;chr2L_7034274_7034483;chr2L_7034694_7034764;chr2L_7034911_7035074 chr2L_7034199_7034273;chr2L_7034484_7034693;chr2L_7034765_7034910 chr2L_7032919_7033018;chr2L_7035075_7035123 75.00 33.33 NA NA NA 66.67 75.00 83.33 85.71 NA 100.00 85.71 83.33 66.67 100.00 66.67 60.00 NA 66.67 83.33 NA NA 66.67 60.00 NA NA NA NA 100.00 80.00 85.71 75.00 50.00 75.00 66.67 NA NA NA 66.67 71.43 100.00 83.33 75.00 100.00 66.67 80.00 NA 81.82 85.71 NA NA 100.00 NA NA 60.00 66.67 NA 63.64 K alternative_last_exon att-ORFA,att-ORFB,noncoding_17915 chr3R - chr3R_16380642_16383128 chr3R_16383024_16383128 chr3R_16380428_16380641 chr3R_16382836_16383023 chr3R_16383129_16383136 3.57 4.17 9.09 8.00 5.56 6.67 6.90 7.69 5.00 0.00 0.00 6.45 13.33 14.29 0.00 10.71 7.14 0.00 13.33 2.38 0.00 1.72 0.00 2.70 0.00 11.76 3.57 0.00 3.23 0.00 4.76 4.17 2.08 7.41 7.41 2.70 3.03 0.00 2.22 4.00 3.23 6.45 8.33 4.55 2.44 4.88 2.50 5.00 9.68 3.03 2.94 5.00 0.00 0.00 8.70 0.00 1.72 3.28 K cassette mys,I_chrX_7958795_7961094 chrX + chrX_7958795_7960130;chrX_7958795_7961094 chrX_7958795_7959480;chrX_7959566_7961094,chrX_7959566_7960130 chrX_7959481_7959565 chrX_7958695_7958794;chrX_7961095_7961194 70.49 69.01 74.86 81.50 59.84 77.04 75.14 77.98 70.62 74.71 83.21 86.14 43.18 67.00 70.20 85.16 51.31 69.75 65.70 62.73 80.86 75.91 77.41 72.29 67.91 50.69 72.15 53.70 80.00 66.40 59.15 68.18 66.04 71.30 69.49 73.85 68.72 73.46 62.24 60.98 74.47 69.58 70.81 70.49 56.90 67.14 74.82 54.65 77.61 69.81 71.38 68.79 88.44 72.28 64.32 69.06 87.60 89.23 K jcn_only_AD spn-A,I_chr3R_25881521_25881590 chr3R - chr3R_25881521_25881590 chr3R_25881521_25881583 chr3R_25881421_25881520;chr3R_25881591_25881690 99.21 97.96 98.94 98.33 97.67 98.92 99.00 100.00 99.13 100.00 97.44 100.00 100.00 98.41 100.00 99.12 100.00 100.00 98.68 99.01 100.00 98.04 100.00 100.00 100.00 99.08 100.00 100.00 100.00 100.00 98.92 99.09 100.00 99.21 100.00 100.00 100.00 97.22 98.84 98.29 97.33 99.41 100.00 97.92 99.07 99.21 100.00 98.68 100.00 100.00 98.53 97.14 97.37 95.24 100.00 100.00 100.00 98.70 K intron_retention CG11943 chrX + chrX_19746603_19746681 chrX_19746602_19746603;chrX_19746681_19746682 chrX_19746457_19746602;chrX_19746682_19747005 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG17508,RI_chr2R_1496995_1497120 chr2R + chr2R_1496288_1496517;chr2R_1496337_1496517;chr2R_1496341_1496517 chr2R_1496303_1496517 chr2R_1496518_1496994;chr2R_1496153_1496287 100.00 100.00 100.00 100.00 100.00 100.00 98.04 97.56 100.00 100.00 100.00 98.86 100.00 100.00 100.00 98.90 96.15 94.12 98.36 98.78 96.67 100.00 100.00 97.30 96.30 97.83 97.44 100.00 93.10 100.00 98.25 100.00 100.00 98.75 100.00 100.00 100.00 100.00 96.00 97.37 100.00 100.00 97.67 100.00 96.43 100.00 100.00 100.00 97.06 100.00 97.92 100.00 100.00 100.00 97.92 100.00 100.00 100.00 K jcn_only_AD qkr54B chr2R + chr2R_13360310_13360591 chr2R_13360315_13360591 chr2R_13360592_13361228;chr2R_13359998_13360309 98.40 97.50 98.81 96.92 100.00 100.00 99.40 99.31 99.11 100.00 98.04 97.06 100.00 94.44 100.00 96.77 100.00 95.24 98.92 98.21 100.00 100.00 98.33 97.22 96.97 100.00 97.50 95.92 96.92 100.00 98.44 98.36 100.00 97.96 95.83 98.21 97.53 98.15 98.81 99.35 100.00 98.19 98.57 97.32 100.00 98.89 99.03 100.00 100.00 97.89 99.20 NA 95.45 97.22 100.00 98.11 98.00 97.10 K alternative_acceptor lap,I_chr3R_3017854_3019314 chr3R + chr3R_3019411_3021337 chr3R_3019411_3019919 chr3R_3019315_3019410;chr3R_3021338_3021402 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 50.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA RI_chr3R_5165997_5180143,CG33936,I_chr3R_5167726_5180143,R_chr3R_5168211_5180143,RI_chr3R_5168214_5168297,RI_chr3R_5183458_5183705 chr3R + chr3R_5168214_5180143 chr3R_5168214_5168297 chr3R_5168114_5168213;chr3R_5180144_5180232 16.11 11.54 9.32 46.07 6.73 7.91 10.03 16.28 6.50 16.67 12.98 27.75 26.02 13.22 18.29 10.03 14.21 16.33 12.12 24.67 15.79 9.23 7.10 16.88 17.91 12.14 7.59 10.28 28.09 5.83 12.75 31.43 34.48 10.79 29.06 22.22 2.78 10.94 27.50 19.76 26.47 9.65 16.11 7.53 42.03 23.24 17.07 27.45 12.94 30.67 17.03 7.24 12.79 25.00 17.24 16.15 12.59 16.96 K intron_retention CG17082,R_chr2R_642176_644740,I_chr2R_644094_644145,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_644094_644159 chr2R_644093_644094;chr2R_644159_644160 chr2R_643994_644093;chr2R_644160_644245 0.00 0.00 1.54 2.00 0.00 0.00 0.00 3.19 0.99 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 3.51 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 K jcn_only_AA smi35A,I_chr2L_14197568_14197656,I_chr2L_14197587_14197656,E_chr2L_14222082_14233893,RI_chr2L_14233579_14233647 chr2L - chr2L_14197587_14197656;chr2L_14197294_14197656 chr2L_14197568_14197656 chr2L_14197657_14197756;chr2L_14196927_14197293 0.00 2.13 0.00 1.06 2.86 0.00 2.50 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 1.69 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 2.44 0.00 0.00 1.79 0.00 0.00 0.00 K intron_retention lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22817658_22817713 chr2L_22817657_22817658;chr2L_22817713_22817714 chr2L_22817643_22817657;chr2L_22817714_22817839 0.00 0.00 0.00 0.00 0.00 0.00 7.69 3.51 1.30 0.00 5.26 0.00 0.00 0.00 0.00 1.19 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 NA NA 2.78 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.90 0.00 0.00 NA 8.00 3.33 2.78 0.00 3.85 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AA CG8005,noncoding_11293 chr3L + chr3L_8191584_8191652 chr3L_8191584_8191641 chr3L_8191314_8191583;chr3L_8191653_8191878 88.24 86.96 NA 82.61 100.00 NA 88.24 70.00 90.48 NA 85.71 87.50 95.24 NA 95.24 87.50 NA NA 90.91 97.22 80.00 NA 77.42 93.33 90.91 90.91 93.18 89.47 82.76 NA 38.46 NA 95.45 86.21 75.00 NA 79.49 92.59 75.00 81.82 NA 85.71 NA 90.48 NA NA 96.43 NA 85.42 88.46 91.67 93.33 83.33 NA 100.00 87.50 90.74 85.71 K jcn_only_AD CG4699 chr3R + chr3R_11624200_11624445;chr3R_11624133_11624445;chr3R_11624127_11624445 chr3R_11624190_11624445 chr3R_11624446_11624758;chr3R_11623809_11624126 25.71 27.50 30.00 30.77 19.05 NA 19.05 NA 10.26 43.24 NA 25.71 NA NA NA NA NA NA NA 9.52 NA 25.71 31.75 23.44 29.41 13.64 33.33 29.82 19.64 4.44 30.00 15.79 15.62 9.52 21.43 34.48 38.57 33.96 30.19 37.78 42.86 15.69 NA 9.52 23.53 29.17 41.46 10.53 41.30 32.00 26.19 28.00 17.78 17.24 15.15 15.62 30.43 8.33 K mutually_exclusive I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499338_1500244,chr3L_1500389_1501798;chr3L_1499338_1501345,chr3L_1501407_1501798 chr3L_1499338_1499771,chr3L_1499880_1501798 chr3L_1500245_1500388;chr3L_1501346_1501406 chr3L_1499772_1499879 chr3L_1499043_1499337;chr3L_1501799_1501892 9.54 NA 20.00 30.00 NA NA NA 16.67 7.14 0.00 0.00 15.38 NA NA 0.00 16.67 NA NA 12.50 8.33 NA 0.00 20.00 0.00 12.50 28.57 0.00 25.00 NA NA 0.00 NA 20.00 10.00 0.00 0.00 NA 20.00 NA 20.00 0.00 7.69 NA 0.00 0.00 0.00 NA 10.00 9.09 28.57 25.00 0.00 NA 0.00 12.50 16.67 25.00 0.00 K jcn_only_AD Cht2,I_chr3L_1754361_1754605,I_chr3L_1754361_1754860 chr3L - chr3L_1754361_1755586;chr3L_1754361_1754860 chr3L_1754361_1754605 chr3L_1754261_1754360;chr3L_1755587_1755934 25.55 NA 41.67 21.21 8.70 21.43 NA 38.46 3.03 NA 26.09 39.13 NA 32.00 27.78 30.43 NA 26.09 15.00 24.14 NA NA NA NA NA 5.00 NA NA NA NA 37.50 NA NA 18.75 NA NA NA NA NA NA NA 24.39 NA NA NA NA NA NA 28.85 NA NA NA NA NA 25.00 NA NA NA K alternative_donor Eb1,I_chr2R_2642491_2642549 chr2R + chr2R_2642487_2642549 chr2R_2642491_2642549 chr2R_2642550_2642622;chr2R_2642404_2642486 0.24 0.56 0.00 0.50 0.00 0.43 0.39 0.44 0.22 0.00 0.64 0.29 0.55 0.00 0.35 0.90 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.57 0.00 0.00 0.46 0.00 0.00 0.81 0.48 0.00 1.62 0.00 0.00 0.00 0.24 0.48 0.41 0.00 0.00 0.67 0.43 0.00 0.36 0.70 0.47 0.00 0.52 0.00 0.65 0.00 0.00 0.73 0.31 K alternative_donor mge,RI_chr3L_3908532_3908778 chr3L - chr3L_3908532_3909003 chr3L_3908532_3908778 chr3L_3908432_3908531;chr3L_3909004_3909039 2.78 0.00 4.55 7.14 4.00 NA 6.67 3.23 6.82 7.69 10.53 2.94 12.50 0.00 3.70 NA 0.00 0.00 0.00 2.94 4.55 2.70 2.33 2.27 0.00 0.00 3.70 2.94 9.09 0.00 3.70 0.00 5.00 6.06 0.00 0.00 1.96 2.86 2.27 0.00 3.85 3.70 6.67 0.00 0.00 2.78 0.00 9.52 2.33 0.00 2.94 0.00 0.00 0.00 3.12 0.00 3.28 2.56 K jcn_only_AD Nplp2,I_chr3L_13349726_13349896 chr3L + chr3L_13349947_13350107 chr3L_13349953_13350107 chr3L_13350108_13350349;chr3L_13349897_13349946 99.89 99.87 99.90 99.85 99.92 99.90 99.87 99.87 99.89 99.89 99.93 99.86 99.92 99.86 99.77 99.91 99.88 99.92 99.90 99.90 99.93 99.93 99.94 99.84 99.90 99.87 99.72 99.71 99.89 99.89 99.90 99.87 99.91 99.91 99.94 99.89 99.87 99.94 99.87 99.95 99.85 99.90 99.87 99.93 99.92 99.90 99.91 99.96 99.87 99.86 99.90 99.85 99.84 99.89 99.85 99.89 99.86 99.91 K alternative_donor MTA1-like,I_chr3R_1472938_1473838 chr3R - chr3R_1472938_1474218 chr3R_1472938_1474012 chr3R_1472838_1472937;chr3R_1474219_1474591 0.00 0.00 0.00 0.00 0.00 0.00 1.28 1.11 0.00 0.00 0.00 0.00 0.00 0.00 2.04 1.18 0.00 0.00 1.54 0.00 2.56 1.52 0.00 0.00 0.00 0.00 1.18 0.00 2.94 0.00 0.00 0.00 0.00 1.00 1.49 0.00 0.00 1.41 0.00 0.00 0.00 0.87 0.00 2.15 0.00 1.82 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 K intron_retention Bzd chrX - chrX_2501758_2502002 chrX_2501757_2501758;chrX_2502002_2502003 chrX_2501295_2501757;chrX_2502003_2502136 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 2.27 0.00 0.00 2.04 0.00 0.00 0.00 2.94 4.35 0.00 0.00 3.77 0.00 5.77 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4365 chr3L + chr3L_20792089_20792242 chr3L_20792088_20792089;chr3L_20792242_20792243 chr3L_20791877_20792088;chr3L_20792243_20793181 33.33 NA NA 60.00 NA NA NA NA 50.00 NA NA NA NA NA NA 33.33 NA NA NA 33.33 NA NA NA NA NA NA 25.00 53.85 45.45 NA NA NA 25.00 NA NA NA NA NA NA NA NA 43.75 NA NA 30.77 36.36 NA NA 17.65 NA NA NA 30.77 NA NA 28.57 33.33 NA K cassette RI_chr2L_1170364_1170429,CG4887,REI_chr2L_1179197_1179859 chr2L + chr2L_1174267_1174909 chr2L_1174267_1174496;chr2L_1174571_1174909 chr2L_1174497_1174570 chr2L_1174197_1174266;chr2L_1174910_1174987 94.12 93.33 95.24 88.24 100.00 100.00 80.95 93.94 95.92 76.92 93.75 93.94 80.00 88.89 94.44 100.00 100.00 93.75 95.24 100.00 91.67 100.00 100.00 89.66 86.67 94.12 95.83 100.00 100.00 95.45 91.84 100.00 96.97 96.67 94.12 90.00 96.55 80.95 86.67 97.50 83.33 90.48 90.00 89.66 100.00 95.45 100.00 97.56 100.00 95.00 92.31 81.25 91.67 92.86 94.74 86.96 100.00 93.75 K jcn_only_AD CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25318474_25319136;chr3R_25318474_25319163;chr3R_25318474_25318925;chr3R_25318474_25319093;chr3R_25318474_25318971;chr3R_25318474_25319004;chr3R_25318474_25319167 chr3R_25318474_25319142 chr3R_25318374_25318473;chr3R_25319168_25319224 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.81 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.42 0.00 0.72 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.35 0.00 0.16 0.00 0.69 0.49 0.26 0.29 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 K intron_retention CG14103 chr3L - chr3L_19797333_19797387 chr3L_19797332_19797333;chr3L_19797387_19797388 chr3L_19796849_19797332;chr3L_19797388_19797509 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5003 chr3R - chr3R_23741065_23741117 chr3R_23741064_23741065;chr3R_23741117_23741118 chr3R_23739503_23741064;chr3R_23741118_23741279 0.00 0.00 0.00 7.69 0.00 0.00 4.35 0.00 1.32 0.00 0.00 0.00 0.00 8.33 2.38 2.00 9.09 0.00 0.00 0.00 0.00 1.69 6.25 0.00 0.00 5.26 2.27 3.03 2.94 0.00 3.70 0.00 3.92 2.13 3.12 4.76 0.00 0.00 0.00 2.86 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 K intron_retention MP1,RI_chr3R_134150_134311 chr3R + chr3R_134150_134341 chr3R_134149_134150;chr3R_134341_134342 chr3R_134050_134149;chr3R_134342_134411 12.05 14.86 11.48 32.10 12.24 10.00 20.97 15.75 17.65 4.55 16.67 15.22 17.86 20.00 20.31 25.32 25.00 17.39 21.74 7.47 17.02 6.61 8.22 7.26 7.69 26.67 8.97 0.00 6.25 8.62 20.00 16.92 8.33 19.27 7.27 19.05 5.21 7.59 9.09 12.21 19.30 13.18 19.44 3.25 9.59 11.61 6.94 8.16 13.48 12.05 8.33 11.29 3.23 13.24 20.00 9.47 8.27 5.16 K alternative_donor CG6006 chr3R + chr3R_11984096_11984579;chr3R_11983962_11984579;chr3R_11984036_11984579;chr3R_11984018_11984579 chr3R_11984029_11984579 chr3R_11984580_11984637;chr3R_11983945_11983961 22.65 37.50 18.75 30.00 NA 20.00 41.67 23.08 19.05 NA 33.33 21.74 12.50 25.00 26.67 30.77 11.11 30.77 27.27 36.36 28.57 14.29 4.76 25.00 11.11 22.22 17.65 20.00 25.00 28.57 16.67 50.00 12.50 26.32 31.25 6.25 14.29 27.27 33.33 21.05 0.00 17.39 16.67 10.00 NA 33.33 11.11 20.00 20.69 16.67 22.22 25.00 28.57 40.00 23.08 37.50 14.29 25.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814894;chr2R_2815654_2816013;chr2R_2816342_2816577;chr2R_2816779_2817459;chr2R_2817604_2817753 chr2R_2814895_2815653;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817460_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor exba,RI_chr3R_1423238_1423301,I_chr3R_1425087_1425925,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1423238_1423493 chr3R_1423238_1423301 chr3R_1423138_1423237;chr3R_1423494_1423659 0.27 0.00 0.26 0.31 0.00 0.00 0.73 0.31 0.30 0.52 0.00 0.33 0.54 0.27 0.25 0.31 0.00 0.00 0.20 0.16 0.00 1.08 0.00 0.22 0.85 0.26 0.64 0.76 0.62 0.41 0.35 0.48 0.45 0.28 0.42 0.00 0.00 0.00 0.29 0.25 0.49 0.26 0.31 0.00 0.00 0.27 0.28 2.40 0.53 0.20 0.22 0.26 0.62 0.00 0.57 0.00 0.22 3.88 K intron_retention I_chrX_15680663_15680821,Rhp chrX + chrX_15686681_15686744 chrX_15686680_15686681;chrX_15686744_15686745 chrX_15686551_15686680;chrX_15686745_15687070 1.28 NA NA 12.50 NA 0.00 2.86 0.00 6.67 NA NA 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA 2.56 NA NA NA NA NA 0.00 12.50 7.69 19.05 NA NA 8.00 0.00 NA 7.14 0.00 5.26 NA NA 0.00 NA NA NA 4.76 0.00 NA 5.00 9.52 0.00 NA NA 12.50 NA 0.00 0.00 NA K intron_retention l(1)G0222,I_chrX_17473084_17473137 chrX - chrX_17469006_17469082 chrX_17469005_17469006;chrX_17469082_17469083 chrX_17468853_17469005;chrX_17469083_17469801 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor RI_chr2R_13458667_13458738,Rab4,I_chr2R_13461027_13461136 chr2R + chr2R_13461027_13461136 chr2R_13461027_13461125 chr2R_13461020_13461026;chr2R_13461137_13461179 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 93.55 100.00 100.00 100.00 96.43 100.00 100.00 100.00 96.30 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 97.96 100.00 96.88 94.74 100.00 93.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 93.33 K jcn_only_AD Oatp74D,I_chr3L_17500359_17500724 chr3L + chr3L_17494579_17500724 chr3L_17500359_17500724 chr3L_17500725_17500824;chr3L_17494545_17494578 13.12 NA 11.54 12.73 NA NA 10.42 13.33 6.49 NA NA 11.63 24.00 0.00 NA 16.00 13.64 26.92 18.92 16.67 NA 8.00 NA NA NA NA NA NA NA NA 8.00 25.00 19.05 3.77 NA 27.27 NA NA NA 13.51 NA 8.93 12.90 4.00 NA NA NA 14.29 6.67 NA 14.29 NA NA NA 4.17 NA NA 42.31 K jcn_only_AA lt,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22832038_22832092 chr2L_22832038_22832085 chr2L_22831938_22832037;chr2L_22832093_22832154 98.91 100.00 100.00 100.00 100.00 97.40 97.13 100.00 97.42 100.00 100.00 98.78 98.94 98.89 100.00 98.66 97.00 100.00 95.49 99.35 100.00 96.74 100.00 97.26 100.00 98.68 100.00 NA NA 100.00 96.90 100.00 97.73 98.96 100.00 98.48 100.00 96.88 100.00 97.59 97.62 98.91 98.84 97.33 100.00 95.70 95.71 97.10 98.57 98.28 96.36 100.00 100.00 100.00 97.96 98.73 100.00 100.00 K alternative_donor I_chrX_1757755_1757801,CG14817,I_chrX_1770939_1771001,RI_chrX_1770945_1771037,RI_chrX_1773382_1773444,trr,I_chrX_1793073_1794406,RI_chrX_1795648_1795745 chrX - chrX_1770945_1771037 chrX_1770945_1771001 chrX_1770845_1770944;chrX_1771038_1771101 99.17 99.40 99.07 99.17 98.95 98.99 99.18 98.44 99.58 100.00 100.00 100.00 98.77 98.72 99.17 100.00 98.70 99.22 98.84 99.22 100.00 100.00 100.00 100.00 97.94 99.07 100.00 100.00 91.51 98.31 100.00 99.19 99.19 98.47 98.85 97.92 98.48 99.38 99.15 98.29 100.00 98.00 100.00 100.00 99.39 99.56 99.07 98.95 99.40 100.00 99.39 98.67 97.77 98.10 98.17 99.00 99.70 98.75 K jcn_only_AD I_chr2R_13460029_13460240,Dcr-2,I_chr2R_13466001_13466061,I_chr2R_13466001_13466072 chr2R - chr2R_13466001_13466072;chr2R_13466001_13466058 chr2R_13466001_13466061 chr2R_13465901_13466000;chr2R_13466073_13466161 3.51 1.92 5.63 1.61 6.12 3.77 1.89 4.24 3.77 8.11 1.96 0.74 2.90 3.77 4.48 4.49 1.25 4.35 3.70 2.73 0.00 0.00 0.00 0.00 6.98 11.76 4.21 5.26 4.26 3.57 2.33 4.76 3.57 3.92 2.38 0.00 3.45 1.96 0.00 4.17 NA 0.74 5.00 2.86 9.52 0.00 0.00 2.17 4.80 4.00 0.00 1.61 0.00 4.00 3.61 11.54 0.00 2.44 K intron_retention CSN3 chr3L - chr3L_20834089_20834147 chr3L_20834088_20834089;chr3L_20834147_20834148 chr3L_20833826_20834088;chr3L_20834148_20834396 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 1.16 0.00 0.00 0.00 2.20 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.00 1.10 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 K intron_retention Hcs,I_chr3R_1303481_1304607 chr3R + chr3R_1305505_1305567 chr3R_1305504_1305505;chr3R_1305567_1305568 chr3R_1305355_1305504;chr3R_1305568_1305711 23.53 15.38 14.29 0.00 NA 6.67 22.22 23.53 20.00 20.00 13.33 18.52 25.00 22.22 35.71 47.37 NA 14.29 20.00 21.62 23.53 41.67 43.33 13.33 15.00 25.00 36.36 NA NA 30.77 22.73 26.32 23.53 20.83 23.53 20.00 26.09 28.00 18.42 30.00 18.75 27.78 NA 23.08 36.84 24.14 30.00 41.18 36.36 24.00 30.30 33.33 NA 31.58 26.32 29.17 0.00 11.11 K jcn_only_AD l(2)gl,I_chr2L_17213_21135,RI_chr2L_20021_20830,I_chr2L_20974_21065 chr2L - chr2L_20021_20830;chr2L_20021_21135 chr2L_20021_21065 chr2L_19921_20020;chr2L_21136_21145 62.52 NA NA 47.62 NA NA 42.86 65.52 57.14 NA NA 80.00 NA NA NA 62.07 NA NA 52.17 NA NA NA NA NA NA NA NA NA NA NA 76.19 NA NA 60.61 NA NA NA NA NA NA NA 62.96 80.95 76.00 NA NA NA 70.00 61.11 NA NA NA NA NA NA NA NA NA K intron_retention RI_chrX_788339_821889,CG3711 chrX - chrX_818652_818771 chrX_818651_818652;chrX_818771_818772 chrX_817997_818651;chrX_818772_818950 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 10.53 NA 0.00 NA NA NA NA NA NA 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2395659 chrX_2388671_2389073;chrX_2389272_2389644;chrX_2389762_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2395659 chrX_2389074_2389271;chrX_2389645_2389761;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2388641_2388670;chrX_2395660_2395759 25.00 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG8635 chr2R - chr2R_4518519_4518576 chr2R_4518518_4518519;chr2R_4518576_4518577 chr2R_4517699_4518518;chr2R_4518577_4519011 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Rab5,I_chr2L_2361586_2364794 chr2L - chr2L_2360394_2360459 chr2L_2360394_2360455 chr2L_2359546_2360393;chr2L_2360460_2360569 98.15 100.00 96.09 96.77 98.63 96.69 98.61 96.79 95.86 100.00 100.00 95.81 97.37 97.79 96.80 97.31 98.99 97.44 99.31 97.33 97.22 96.67 98.57 98.46 97.47 100.00 93.20 93.75 100.00 100.00 98.37 100.00 96.10 97.94 98.61 100.00 98.68 98.68 92.73 98.85 98.31 96.34 95.24 100.00 97.78 98.88 99.01 96.30 97.01 98.90 100.00 96.74 98.15 96.15 97.74 98.53 98.60 98.31 K intron_retention CHKov1 chr3R - chr3R_21149224_21149283 chr3R_21149223_21149224;chr3R_21149283_21149284 chr3R_21149027_21149223;chr3R_21149284_21149562 0.00 0.00 0.00 6.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rab1,I_chr3R_17093463_17094644,I_chr3R_17094214_17094492,I_chr3R_17099005_17099062 chr3R - chr3R_17093463_17094492 chr3R_17093462_17093463;chr3R_17094492_17094493 chr3R_17093363_17093462;chr3R_17094493_17094592 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.95 0.60 0.00 0.00 0.53 0.00 0.00 1.33 0.42 0.00 0.90 0.52 1.06 0.00 0.72 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.58 0.42 0.95 0.00 0.58 0.00 0.91 0.91 0.00 0.44 0.00 0.00 0.00 0.54 0.00 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2389073;chrX_2389272_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2395659 chrX_2389074_2389271;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664 chrX_2387149_2387248;chrX_2395660_2395759 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K alternative_donor CG7671,RI_chr3R_14192652_14192789 chr3R + chr3R_14192652_14192789 chr3R_14192725_14192789 chr3R_14192790_14192889;chr3R_14192552_14192651 100.00 100.00 97.67 100.00 97.14 100.00 98.15 100.00 98.85 100.00 95.65 100.00 100.00 96.77 100.00 100.00 100.00 100.00 96.00 99.21 95.83 100.00 100.00 98.36 97.62 100.00 100.00 100.00 97.87 100.00 96.55 97.83 100.00 100.00 100.00 100.00 98.99 100.00 98.85 98.75 100.00 100.00 100.00 100.00 98.39 100.00 100.00 98.31 100.00 100.00 100.00 96.88 97.50 98.15 100.00 100.00 98.18 100.00 K jcn_only_AA Mnt chrX + chrX_3587966_3592777;chrX_3587966_3592774;chrX_3587966_3592150 chrX_3587966_3592372 chrX_3587244_3587965;chrX_3592778_3593060 1.62 4.17 2.94 2.08 0.00 7.14 6.06 0.00 0.00 0.00 3.12 0.00 0.00 3.85 2.33 0.00 0.00 NA 0.00 0.00 0.00 2.56 5.88 4.35 0.00 4.00 4.00 NA 0.00 3.39 0.00 NA 1.47 0.00 0.00 0.00 2.38 0.00 6.25 2.00 NA 4.17 NA 0.00 NA 9.52 NA 1.52 1.72 NA 4.35 NA NA NA 0.00 NA NA 3.33 K intron_retention Psn,RI_chr3L_20430213_20430358 chr3L + chr3L_20427133_20427186 chr3L_20427132_20427133;chr3L_20427186_20427187 chr3L_20427034_20427132;chr3L_20427187_20427345 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 1.35 0.00 0.00 0.00 2.08 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 K intron_retention CG3740,I_chrX_1576815_1577129,I_chrX_1577031_1577129,CEI_chrX_1579569_1579679,I_chrX_1589508_1589564 chrX - chrX_1562778_1562840 chrX_1562777_1562778;chrX_1562840_1562841 chrX_1562012_1562777;chrX_1562841_1563308 0.72 1.03 1.41 0.00 6.52 0.00 0.00 1.28 0.83 1.03 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 2.11 0.00 2.26 1.00 0.00 0.00 8.70 2.99 0.00 0.00 1.06 0.92 0.00 0.00 0.00 2.41 1.03 1.49 1.71 0.75 0.72 0.00 1.28 0.84 2.37 3.42 3.60 1.98 0.87 0.00 0.00 0.00 0.00 0.00 1.61 1.39 0.00 K intron_retention Adk2,RI_chr2R_19912129_19912422,RI_chr2R_19912148_19912422 chr2R + chr2R_19911944_19912422 chr2R_19911943_19911944;chr2R_19912422_19912423 chr2R_19911721_19911943;chr2R_19912423_19912522 0.00 0.90 0.00 0.00 0.00 0.00 3.25 0.35 0.52 0.00 1.43 0.64 0.00 0.00 0.71 1.08 0.60 0.99 0.00 0.59 1.08 0.00 0.80 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.42 0.35 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.40 0.00 0.00 0.31 0.00 0.41 0.00 0.41 0.00 0.00 0.00 0.53 0.48 K jcn_only_AD E(bx),I_chr3L_239186_239264,I_chr3L_246324_246699 chr3L - chr3L_239186_239264 chr3L_239186_239242 chr3L_239086_239185;chr3L_239265_239329 98.94 100.00 98.74 99.54 99.00 99.15 98.88 99.54 99.63 100.00 98.94 98.54 100.00 99.22 99.34 99.51 97.09 99.29 98.90 98.86 99.14 97.87 97.45 100.00 97.62 100.00 98.62 100.00 98.23 98.99 96.93 97.85 98.03 96.98 97.67 97.60 100.00 98.80 99.31 98.48 98.70 98.79 97.71 99.22 97.25 98.62 98.78 99.44 99.28 100.00 99.34 100.00 98.08 100.00 98.82 99.18 97.62 100.00 K intron_retention CG15739 chrX + chrX_11767537_11767914 chrX_11767536_11767537;chrX_11767914_11767915 chrX_11767352_11767536;chrX_11767915_11768298 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.08 6.67 4.76 0.00 0.00 0.00 5.13 6.25 0.00 10.53 7.89 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 NA 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 NA 3.03 0.00 0.00 NA 0.00 0.00 0.00 3.64 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Lerp chr3R - chr3R_22688433_22688796;chr3R_22688433_22688772;chr3R_22688433_22688494 chr3R_22688433_22688824 chr3R_22688359_22688432;chr3R_22688825_22688828 14.29 NA 20.00 14.29 NA NA 25.00 25.00 0.00 NA NA 25.00 NA 0.00 0.00 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 20.00 NA NA NA NA NA 20.00 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 14.29 NA NA NA K jcn_only_AD Rab30,I_chr2L_7032178_7032236 chr2L - chr2L_7032178_7032236;chr2L_7032178_7032310;chr2L_7032178_7032321 chr2L_7032178_7032244 chr2L_7032078_7032177;chr2L_7032322_7032336 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 NA 3.70 0.00 0.00 0.00 3.03 3.77 0.00 3.45 0.00 3.45 4.55 0.00 3.45 0.00 9.09 0.00 0.00 0.00 0.00 2.63 NA 0.00 8.82 6.67 2.86 1.69 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 3.70 1.96 NA NA 0.00 0.00 0.00 NA 0.00 K jcn_only_AD CkIalpha,I_chrX_12548371_12549203,I_chrX_12548704_12549203,I_chrX_12548772_12549203 chrX + chrX_12548131_12549203;chrX_12547919_12549203 chrX_12548202_12549203 chrX_12549204_12549210;chrX_12547852_12547918 100.00 100.00 98.92 100.00 98.77 98.77 98.98 99.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.11 100.00 100.00 98.25 100.00 100.00 100.00 100.00 98.73 100.00 100.00 100.00 98.10 100.00 100.00 99.50 100.00 100.00 100.00 100.00 98.33 100.00 100.00 99.48 100.00 100.00 97.62 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG2118,I_chr3R_27619193_27619598 chr3R - chr3R_27619193_27619598 chr3R_27619193_27619299 chr3R_27619093_27619192;chr3R_27619599_27619627 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 NA 100.00 NA 100.00 NA NA 93.75 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 95.45 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA K alternative_acceptor exd chrX + chrX_15886650_15887520 chrX_15886650_15887504 chrX_15886529_15886649;chrX_15887521_15887806 81.82 76.92 85.71 84.62 85.71 100.00 87.50 81.82 83.33 NA NA 92.31 NA 87.50 90.00 66.67 NA 80.00 NA 76.47 NA 50.00 78.26 86.67 100.00 NA 92.31 85.71 NA NA 80.00 NA 40.00 62.50 87.50 NA 80.95 76.47 80.00 41.67 NA 81.25 NA 90.91 NA NA 72.73 NA 70.59 90.00 73.33 90.00 NA NA 80.00 NA 88.89 NA K alternative_acceptor CG9674,I_chr3L_16785706_16785748,I_chr3L_16793055_16800660 chr3L - chr3L_16785687_16785748 chr3L_16785706_16785748 chr3L_16785749_16785848;chr3L_16785606_16785686 0.00 0.53 0.00 0.00 0.53 0.00 0.28 0.00 0.00 0.61 0.00 0.35 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.29 0.83 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.62 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N multi_cassette Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16107821_16110644 chr3L_16107821_16108768;chr3L_16108931_16109131;chr3L_16109720_16110644 chr3L_16108769_16108930;chr3L_16109132_16109719 chr3L_16107721_16107820;chr3L_16110645_16111208 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 81.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor und chr2L + chr2L_9763735_9763838 chr2L_9763735_9763835 chr2L_9763520_9763734;chr2L_9763839_9764648 98.82 98.41 98.11 98.48 100.00 100.00 98.75 98.25 99.21 98.36 100.00 97.96 98.36 100.00 100.00 97.78 100.00 100.00 97.30 99.28 97.78 97.73 100.00 98.96 100.00 100.00 98.63 98.96 98.59 100.00 100.00 98.46 98.18 98.55 98.21 98.41 98.88 98.36 100.00 100.00 98.91 99.15 100.00 100.00 98.92 98.84 98.68 99.06 98.99 98.59 98.82 98.08 97.67 98.04 98.46 98.46 98.78 100.00 K alternative_donor CG3719,E_chrX_1273406_1273479,I_chrX_1273406_1273486,RI_chrX_1273406_1273763 chrX - chrX_1273406_1273763;chrX_1273406_1273486 chrX_1273406_1274170 chrX_1273306_1273405;chrX_1274171_1274773 95.74 96.08 96.97 92.86 96.88 92.59 95.35 97.67 96.00 95.65 90.91 95.16 96.67 96.15 95.00 93.33 94.44 90.48 93.94 97.10 97.06 93.94 95.12 95.74 96.00 97.14 94.00 91.30 96.43 97.22 93.33 93.33 92.50 96.23 94.44 94.12 95.89 95.12 96.72 96.72 91.89 96.00 100.00 100.00 95.74 94.23 96.08 92.31 95.24 100.00 97.37 92.59 96.67 97.56 96.88 98.11 96.72 93.02 K jcn_only_AA Khc-73 chr2R - chr2R_11409610_11410378 chr2R_11409634_11410378 chr2R_11410379_11410524;chr2R_11409507_11409609 13.98 7.84 17.86 30.00 18.92 16.67 3.28 9.78 14.29 18.52 15.62 11.70 28.57 7.55 13.33 12.66 9.68 12.82 25.64 14.02 19.44 9.09 11.11 9.43 30.00 30.56 6.33 9.43 15.66 10.91 13.21 14.29 14.55 25.64 10.20 51.67 21.57 12.73 16.67 13.98 26.19 14.74 5.41 11.59 11.90 16.67 2.27 14.29 15.79 12.28 19.44 21.05 12.90 3.45 10.77 10.64 2.94 16.92 K alternative_acceptor RpL36A,I_chr2L_8042126_8042468,snoRNA:Psi28S-2648 chr2L - chr2L_8042120_8042439 chr2L_8042126_8042439 chr2L_8042440_8042613;chr2L_8042026_8042119 100.00 100.00 100.00 100.00 99.96 100.00 100.00 99.98 100.00 100.00 100.00 100.00 100.00 100.00 99.98 100.00 100.00 100.00 100.00 99.99 99.97 100.00 100.00 100.00 100.00 99.97 100.00 99.97 100.00 100.00 100.00 100.00 99.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.97 100.00 100.00 100.00 99.99 99.99 100.00 100.00 99.97 99.97 100.00 99.95 100.00 100.00 100.00 100.00 100.00 99.99 K intron_retention CG9147,I_chr2L_6066313_6066378 chr2L + chr2L_6067236_6067288 chr2L_6067235_6067236;chr2L_6067288_6067289 chr2L_6066369_6067235;chr2L_6067289_6067635 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 4.55 0.00 2.33 0.00 NA 0.00 0.00 0.00 0.00 4.76 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA N cassette CG11063 chrX - chrX_13720986_13721372 chrX_13720986_13721075;chrX_13721139_13721372 chrX_13721076_13721138 chrX_13720820_13720985;chrX_13721373_13721542 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 89.19 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA unc-13,I_chr4_897077_897142,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_897077_897142 chr4_897081_897142 chr4_897143_897242;chr4_896977_897076 100.00 96.88 100.00 100.00 100.00 92.31 97.09 98.48 97.75 NA 100.00 97.40 100.00 96.77 96.67 98.04 100.00 95.24 97.73 100.00 NA 97.09 100.00 100.00 100.00 97.87 100.00 NA NA 96.67 98.28 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 95.59 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 NA NA NA 97.62 NA 95.83 NA K multi_cassette CG8451 chr2L - chr2L_8203247_8204686 chr2L_8203247_8203313;chr2L_8203470_8203526;chr2L_8203637_8204686 chr2L_8203314_8203469;chr2L_8203527_8203636 chr2L_8203087_8203246;chr2L_8204687_8205128 97.50 97.30 100.00 91.11 96.67 100.00 100.00 100.00 98.72 96.00 97.14 96.30 95.24 96.55 97.50 94.59 96.88 100.00 100.00 98.48 96.88 96.00 100.00 97.96 100.00 100.00 97.50 92.86 100.00 97.14 100.00 96.15 97.44 97.87 96.88 84.00 97.83 97.14 100.00 98.00 93.75 98.39 96.00 98.48 92.50 98.21 100.00 95.35 98.25 100.00 97.96 96.88 95.45 96.77 100.00 97.96 96.88 100.00 K intron_retention kst,I_chr3L_3365752_3365816,I_chr3L_3367008_3367514 chr3L + chr3L_3337829_3351495 chr3L_3337828_3337829;chr3L_3351495_3351496 chr3L_3337683_3337828;chr3L_3351496_3351686 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 N cassette Dscam,F_chr2R_3219886_3225754,I_chr2R_3219886_3226532,FI_chr2R_3219886_3227659,F_chr2R_3219886_3228449,F_chr2R_3219886_3228832,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3219886_3235353 chr2R_3219886_3222438;chr2R_3222724_3235353 chr2R_3222439_3222723 chr2R_3219786_3219885;chr2R_3235354_3235453 100.00 46.15 50.00 19.23 100.00 100.00 20.00 35.00 100.00 NA NA 100.00 16.67 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 16.67 100.00 100.00 100.00 100.00 100.00 100.00 47.06 100.00 100.00 NA 30.43 100.00 100.00 100.00 100.00 100.00 100.00 52.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 52.94 100.00 42.86 100.00 100.00 100.00 50.00 30.00 100.00 NA K intron_retention klett chrX - chrX_21500597_21501093 chrX_21500596_21500597;chrX_21501093_21501094 chrX_21500510_21500596;chrX_21501094_21501123 98.75 97.30 100.00 98.15 97.62 100.00 95.79 98.68 97.60 100.00 100.00 100.00 100.00 97.78 97.62 98.57 97.78 97.78 100.00 100.00 96.67 100.00 100.00 100.00 100.00 97.37 98.25 97.30 100.00 98.39 100.00 100.00 100.00 98.68 100.00 100.00 98.11 100.00 98.15 98.48 96.15 98.57 97.30 100.00 96.67 100.00 97.37 97.92 98.75 100.00 100.00 94.29 100.00 100.00 100.00 96.30 100.00 100.00 K alternative_donor Zn72D,RF_chr3L_16100887_16102721,I_chr3L_16105199_16105253 chr3L - chr3L_16105199_16105299;chr3L_16105199_16105253;chr3L_16105199_16105318 chr3L_16105199_16105431 chr3L_16105099_16105198;chr3L_16105432_16105487 100.00 100.00 100.00 100.00 100.00 100.00 98.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 87.50 100.00 98.08 90.00 100.00 100.00 100.00 94.44 93.75 100.00 100.00 100.00 95.00 95.56 100.00 100.00 100.00 NA NA 97.22 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 95.56 100.00 100.00 100.00 NA NA 96.77 NA 100.00 100.00 K alternative_donor VhaPPA1-1,I_chr3R_10728476_10728933,RI_chr3R_10728613_10728929,I_chr3R_10728645_10728933 chr3R - chr3R_10728613_10728933 chr3R_10728613_10728929 chr3R_10728545_10728612;chr3R_10728934_10729029 0.23 0.29 0.00 0.30 0.00 0.00 0.00 0.55 0.27 0.00 0.00 0.15 0.00 0.36 2.33 0.00 0.00 0.27 0.00 0.40 0.00 0.69 0.23 0.45 0.33 0.00 0.74 1.04 0.27 0.32 0.30 0.00 0.29 0.19 0.35 0.00 0.21 0.00 0.33 0.17 0.00 0.00 0.00 0.00 0.16 0.22 0.28 0.28 0.32 0.35 0.54 0.00 0.30 0.40 0.25 0.25 0.22 0.00 N multi_cassette CG31619,I_chr2L_21725446_21728027 chr2L + chr2L_21719644_21727005 chr2L_21719644_21720358;chr2L_21720482_21725067;chr2L_21725446_21727005 chr2L_21720359_21720481;chr2L_21725068_21725445 chr2L_21719514_21719643;chr2L_21727006_21727362 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 25.00 100.00 100.00 NA 20.00 55.00 100.00 100.00 100.00 50.00 100.00 100.00 45.00 100.00 46.67 53.33 100.00 100.00 100.00 50.00 100.00 100.00 65.38 100.00 68.97 100.00 100.00 47.83 100.00 100.00 53.85 100.00 100.00 63.16 100.00 100.00 100.00 100.00 100.00 100.00 57.58 K alternative_donor foxo,I_chr3R_9907161_9907218 chr3R + chr3R_9905361_9905960 chr3R_9905381_9905960 chr3R_9905961_9906185;chr3R_9905068_9905360 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 K alternative_acceptor I_chr2L_18697359_18697402,CG10341 chr2L + chr2L_18698977_18699038 chr2L_18698977_18699035 chr2L_18698833_18698976;chr2L_18699039_18700647 95.34 100.00 93.75 95.45 NA 91.67 96.00 100.00 96.97 NA 100.00 92.59 92.31 89.47 100.00 91.67 100.00 93.33 92.86 96.00 90.91 92.86 95.45 94.74 93.33 90.91 94.74 92.31 100.00 100.00 100.00 92.86 100.00 93.10 93.75 100.00 100.00 92.86 100.00 95.24 NA 89.66 100.00 92.86 90.91 100.00 96.30 100.00 100.00 93.33 100.00 100.00 92.86 100.00 100.00 93.33 96.77 92.00 K intron_retention CG1943,I_chr3R_2900855_2902611,I_chr3R_2901072_2902611,I_chr3R_2901508_2902611,I_chr3R_2902064_2902611 chr3R + chr3R_2900696_2902611 chr3R_2900695_2900696;chr3R_2902611_2902612 chr3R_2900443_2900695;chr3R_2902612_2902711 1.42 0.66 0.77 2.29 1.42 1.15 0.98 1.85 0.84 0.71 1.51 1.81 1.52 1.93 2.28 1.59 1.91 1.83 1.41 2.49 1.18 1.94 0.76 0.96 1.50 1.57 1.79 2.57 3.20 1.25 2.61 1.58 2.73 1.28 0.51 1.57 1.04 0.65 0.87 1.41 3.88 1.79 1.19 0.49 2.56 1.62 0.48 2.74 1.32 0.98 0.88 0.82 0.92 0.94 1.10 1.58 0.98 2.76 K cassette TepII,I_chr2L_7696207_7698724,I_chr2L_7697158_7697976,I_chr2L_7697582_7697976 chr2L - chr2L_7696207_7698724;chr2L_7696207_7697976 chr2L_7696207_7697400;chr2L_7697582_7698724,chr2L_7697582_7697976 chr2L_7697401_7697581 chr2L_7696107_7696206;chr2L_7698725_7698824 78.57 72.00 84.62 88.37 68.42 83.33 91.30 82.14 77.94 78.57 93.75 95.77 93.33 82.14 86.67 83.78 91.30 48.15 82.05 85.92 76.47 71.43 72.73 58.62 69.57 88.00 79.17 47.83 85.71 66.67 78.38 76.92 70.83 91.11 75.00 40.91 72.00 86.67 85.00 77.14 93.33 81.03 65.22 76.67 81.82 75.00 72.73 81.82 88.89 53.33 68.75 61.90 92.86 87.50 86.49 76.92 73.68 70.83 K jcn_only_AD l(2)s5379,RI_chr2L_2228057_2229265,I_chr2L_2229012_2229265,I_chr2L_2229179_2229265 chr2L + chr2L_2227282_2229265;chr2L_2229012_2229265 chr2L_2228057_2229265 chr2L_2229266_2229365;chr2L_2227182_2227281 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.49 0.63 0.00 1.32 0.00 0.62 0.00 0.39 0.00 0.61 0.56 0.00 0.69 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.76 0.28 0.27 0.00 0.00 0.76 0.00 0.00 0.23 0.00 0.00 0.63 1.59 0.00 0.00 0.00 0.00 0.50 0.00 1.27 0.00 0.70 0.00 0.40 0.75 1.23 0.00 K alternative_donor foi,I_chr3L_8520658_8520733,I_chr3L_8524905_8524976 chr3L + chr3L_8518753_8523659;chr3L_8518490_8523659 chr3L_8518805_8523659 chr3L_8523660_8524249;chr3L_8518407_8518489 91.85 96.47 90.91 90.40 94.81 92.31 98.29 93.98 93.91 89.41 92.86 96.69 95.71 91.76 90.48 92.59 92.21 96.70 95.29 93.03 93.42 86.76 88.97 89.38 90.91 94.05 93.33 84.62 79.38 91.80 91.75 91.67 91.85 93.85 94.51 93.16 87.05 91.67 91.72 90.86 90.11 93.49 92.86 90.91 89.19 90.91 81.43 92.68 92.26 89.23 94.44 95.77 93.06 89.36 91.15 90.54 88.89 92.75 K intron_retention MTA1-like chr3R - chr3R_1468087_1468150 chr3R_1468086_1468087;chr3R_1468150_1468151 chr3R_1467836_1468086;chr3R_1468151_1468420 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9390195;chr2R_9389597_9390151;chr2R_9389597_9389907;chr2R_9389597_9389940;chr2R_9389597_9389751;chr2R_9389597_9390264;chr2R_9389597_9389753;chr2R_9389597_9389757 chr2R_9389597_9390293 chr2R_9389497_9389596;chr2R_9390294_9390295 15.79 6.45 20.93 19.61 30.43 26.32 19.49 27.93 29.38 7.32 28.79 25.44 22.22 23.53 14.46 13.91 26.32 18.68 18.09 29.69 26.67 16.36 9.43 9.59 20.34 19.18 2.82 1.82 11.11 1.47 17.65 17.50 20.93 20.00 3.33 3.09 8.33 10.81 11.67 11.54 16.00 24.64 14.63 3.12 15.79 6.56 1.18 33.33 18.66 3.28 2.78 12.31 10.45 1.39 26.19 3.33 5.71 10.53 K mutually_exclusive CG42321,I_chr2R_9326329_9326436,I_chr2R_9326353_9326436 chr2R - chr2R_9303121_9304079,chr2R_9305334_9306491 chr2R_9303121_9303379,chr2R_9303463_9306491 chr2R_9304080_9305333 chr2R_9303380_9303462 chr2R_9302939_9303120;chr2R_9306492_9306590 40.00 50.00 25.00 40.00 0.00 50.00 33.33 40.00 44.44 50.00 50.00 28.57 66.67 33.33 33.33 12.50 33.33 50.00 50.00 40.00 60.00 22.22 50.00 37.50 50.00 66.67 40.00 NA 33.33 60.00 50.00 33.33 25.00 33.33 50.00 0.00 50.00 33.33 40.00 28.57 33.33 50.00 50.00 50.00 50.00 40.00 40.00 14.29 33.33 33.33 16.67 20.00 28.57 50.00 66.67 33.33 37.50 25.00 K intron_retention bor chr3R - chr3R_12087649_12087712 chr3R_12087648_12087649;chr3R_12087712_12087713 chr3R_12087533_12087648;chr3R_12087713_12087911 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.36 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27805342_27811232;chr3R_27805342_27811214 chr3R_27805342_27810955 chr3R_27805247_27805341;chr3R_27811233_27811433 100.00 94.44 100.00 97.50 91.30 93.33 100.00 100.00 98.44 100.00 100.00 100.00 96.30 97.14 100.00 100.00 87.50 100.00 100.00 100.00 95.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 70.59 100.00 97.22 100.00 94.12 100.00 93.33 94.12 100.00 100.00 96.15 97.22 100.00 98.00 96.67 100.00 100.00 94.44 100.00 100.00 100.00 93.75 100.00 100.00 90.00 100.00 94.59 100.00 100.00 100.00 K intron_retention CG10267 chr3R + chr3R_2283832_2283888 chr3R_2283831_2283832;chr3R_2283888_2283889 chr3R_2283215_2283831;chr3R_2283889_2284023 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 1.45 1.38 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.87 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.54 N intron_retention RhoGAP18B chrX - chrX_19038625_19038713 chrX_19038624_19038625;chrX_19038713_19038714 chrX_19038597_19038624;chrX_19038714_19038760 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA K jcn_only_AD dream chr2R - chr2R_1909388_1909452 chr2R_1909388_1909442 chr2R_1908976_1909387;chr2R_1909453_1910748 99.50 100.00 100.00 100.00 95.24 97.73 96.30 96.67 100.00 100.00 100.00 100.00 98.00 100.00 100.00 100.00 100.00 92.50 96.08 100.00 100.00 94.74 100.00 97.37 NA 93.62 97.67 95.45 95.00 100.00 100.00 90.32 97.37 100.00 100.00 NA 100.00 97.30 98.21 100.00 92.31 95.65 98.00 96.43 96.43 100.00 100.00 95.65 99.01 100.00 100.00 100.00 NA 95.00 95.24 100.00 96.97 100.00 K jcn_only_AA Nop60B,I_chr2R_20062491_20062553,I_chr2R_20063248_20063949,F_chr2R_20073291_20073744 chr2R + chr2R_20062491_20062553 chr2R_20062491_20062550 chr2R_20062404_20062490;chr2R_20062554_20062653 100.00 99.66 99.62 100.00 98.76 100.00 100.00 100.00 99.70 100.00 100.00 100.00 99.56 100.00 99.65 100.00 99.52 99.63 99.58 100.00 99.18 100.00 99.66 100.00 100.00 100.00 100.00 100.00 100.00 99.67 100.00 100.00 99.71 99.75 99.64 99.35 100.00 100.00 100.00 100.00 100.00 99.59 99.51 99.11 100.00 100.00 100.00 99.68 99.82 100.00 99.58 99.67 100.00 99.66 100.00 100.00 100.00 99.52 K jcn_only_AA vimar,CG30156 chr2R - chr2R_2866103_2872916 chr2R_2866106_2872916 chr2R_2872917_2873214;chr2R_2865197_2866102 12.50 14.29 12.50 16.28 4.55 9.09 9.86 8.14 14.85 11.36 11.90 16.90 5.13 10.26 17.07 6.56 12.12 10.87 17.50 22.09 12.50 13.64 16.00 15.62 NA 6.98 13.64 18.52 6.45 15.00 12.07 26.83 10.26 13.41 9.09 6.12 3.92 20.00 13.04 11.50 17.65 11.39 8.11 9.84 15.79 13.33 7.14 8.14 12.86 26.09 23.91 13.51 10.00 NA 9.09 3.85 18.52 13.43 K alternative_last_exon CG8112,RI_chr3R_4539493_4539602,I_chr3R_4545118_4545525 chr3R + chr3R_4539493_4539602;chr3R_4539493_4539867 chr3R_4539493_4539553 chr3R_4539868_4542290 chr3R_4539554_4539826 chr3R_4539393_4539492 3.36 3.90 3.33 11.40 1.85 3.39 9.23 6.73 5.00 2.63 4.08 2.73 19.10 5.45 2.78 9.64 4.08 3.23 6.67 3.31 2.04 4.72 3.03 3.49 1.72 1.61 3.41 3.08 7.04 0.00 6.90 3.17 1.28 4.30 3.85 3.51 1.08 1.59 1.72 6.30 1.89 3.88 2.08 1.23 0.00 3.53 2.22 2.78 3.36 4.30 5.26 4.00 1.43 3.03 4.11 2.47 4.63 1.30 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2389073;chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2393243 chrX_2389074_2389271;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2393244_2393291 0.00 NA NA NA NA NA NA NA NA NA NA 5.26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention sun chrX - chrX_15742038_15742918 chrX_15742037_15742038;chrX_15742918_15742919 chrX_15741454_15742037;chrX_15742919_15743049 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.32 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.50 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.11 0.43 K alternative_acceptor frtz chr2L - chr2L_1714474_1715138;chr2L_1714427_1715138 chr2L_1714406_1715138 chr2L_1715139_1715811;chr2L_1714173_1714405 0.00 0.00 0.00 7.69 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 11.11 0.00 0.00 0.00 12.50 0.00 0.00 4.35 0.00 0.00 4.55 6.25 0.00 0.00 0.00 0.00 7.14 0.00 12.50 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 8.33 0.00 K jcn_only_AD Apc chr3R - chr3R_24666548_24670281 chr3R_24666548_24667940 chr3R_24662621_24666547;chr3R_24670282_24670491 1.13 2.13 0.00 1.50 0.00 0.00 4.04 1.27 2.40 1.37 0.00 0.62 0.00 1.82 0.00 2.60 2.30 1.18 0.85 2.55 0.00 6.86 0.88 1.00 1.45 2.20 4.35 2.36 4.08 3.17 3.41 0.00 1.13 0.00 0.00 1.12 0.00 0.00 1.71 0.34 0.00 1.38 1.33 1.69 0.00 0.00 2.56 0.51 1.03 0.00 0.00 1.27 1.64 3.70 1.01 0.00 0.00 1.37 K jcn_only_AA I_chr3R_261173_261244,CG14650,RI_chr3R_265878_265942 chr3R + chr3R_265874_265948 chr3R_265874_265942 chr3R_265778_265873;chr3R_265949_266042 100.00 99.17 100.00 100.00 100.00 98.73 100.00 100.00 100.00 98.91 100.00 100.00 100.00 98.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.75 98.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.01 99.36 100.00 100.00 99.23 100.00 100.00 100.00 100.00 99.24 100.00 99.13 100.00 99.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.28 K intron_retention CG6854,RI_chr3L_15102059_15102345 chr3L + chr3L_15104689_15104752 chr3L_15104688_15104689;chr3L_15104752_15104753 chr3L_15104187_15104688;chr3L_15104753_15106050 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1399,I_chr2R_3574133_3574191 chr2R - chr2R_3565240_3565403 chr2R_3565239_3565240;chr2R_3565403_3565404 chr2R_3564840_3565239;chr2R_3565404_3565909 95.74 97.73 97.92 98.65 92.11 84.62 96.83 92.31 94.17 98.00 96.55 90.91 100.00 92.86 97.67 91.80 95.74 91.11 92.54 96.08 88.24 99.05 97.06 98.28 95.92 95.92 94.74 94.87 89.71 89.06 92.11 87.72 89.90 91.95 92.73 87.93 96.83 97.37 96.83 97.03 93.67 96.74 97.78 98.46 89.39 94.94 98.28 91.46 95.79 96.59 97.06 98.04 90.00 96.00 93.94 88.64 96.43 84.44 K alternative_acceptor Nedd4,I_chr3L_17534504_17535990,I_chr3L_17535485_17536604,I_chr3L_17536813_17536863 chr3L + chr3L_17535485_17535689 chr3L_17535485_17535650 chr3L_17535417_17535484;chr3L_17535690_17535734 83.33 NA NA NA NA NA 60.00 NA 83.33 NA NA 91.67 NA NA NA NA NA NA NA 76.92 NA 87.50 100.00 71.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA K intron_retention CG6006 chr3R + chr3R_11984036_11984642 chr3R_11984035_11984036;chr3R_11984642_11984643 chr3R_11984029_11984035;chr3R_11984643_11984889 90.00 NA NA 83.33 NA NA NA 92.86 92.86 NA NA 92.31 NA NA 80.00 91.67 100.00 NA 81.82 88.89 88.89 NA NA 72.73 NA 100.00 NA NA NA NA 90.00 NA NA 87.50 NA NA NA NA NA 100.00 NA 87.50 NA NA NA NA NA NA 90.00 NA 100.00 NA NA NA NA NA NA NA K intron_retention PH4alphaEFB,I_chr3R_26305150_26309614 chr3R + chr3R_26305150_26305314 chr3R_26305149_26305150;chr3R_26305314_26305315 chr3R_26305050_26305149;chr3R_26305315_26305502 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32528,Alr chrX + chrX_19641116_19641282 chrX_19641115_19641116;chrX_19641282_19641283 chrX_19640844_19641115;chrX_19641283_19642491 0.00 0.00 0.56 0.44 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.07 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.94 0.00 0.00 0.00 0.85 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Surf4,I_chr3R_11171570_11171630,I_chr3R_11171728_11171801 chr3R - chr3R_11170875_11171630 chr3R_11171570_11171630 chr3R_11171631_11171727;chr3R_11170775_11170874 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.49 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 1.00 0.44 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.44 0.00 0.00 K alternative_donor Rab30,I_chr2L_7032178_7032236 chr2L - chr2L_7032178_7032236;chr2L_7032178_7032310;chr2L_7032178_7032321 chr2L_7032178_7032244 chr2L_7032078_7032177;chr2L_7032322_7032336 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 4.55 NA 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 K intron_retention l(3)05822,I_chr3R_14115739_14115801 chr3R - chr3R_14117226_14123845 chr3R_14117225_14117226;chr3R_14123845_14123846 chr3R_14115802_14117225;chr3R_14123846_14124586 5.71 3.57 7.55 6.56 5.88 7.50 6.76 3.28 5.47 6.67 4.48 3.45 8.00 4.65 3.03 5.56 5.45 5.17 3.57 3.60 3.70 6.98 2.70 3.51 9.38 11.11 7.94 8.33 6.82 3.12 10.81 5.26 0.00 7.78 9.52 7.69 6.35 3.51 11.63 6.45 12.50 4.90 5.56 3.45 0.00 5.71 10.42 0.00 5.38 4.44 10.53 10.00 7.69 0.00 6.52 6.67 11.54 0.00 K jcn_only_AD l(2)k05819,I_chr2L_4396173_4396266 chr2L + chr2L_4396128_4396809;chr2L_4396173_4396809 chr2L_4396407_4396809 chr2L_4396810_4396906;chr2L_4396073_4396127 0.00 0.00 0.00 0.00 0.82 0.00 0.00 1.27 0.68 0.00 0.00 0.00 3.12 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.94 2.44 0.00 0.88 0.00 0.00 0.00 0.00 0.00 1.41 0.93 0.00 0.00 0.54 0.00 1.85 0.00 1.90 0.60 2.17 0.00 0.00 0.00 0.00 0.00 3.33 2.78 3.08 1.03 0.00 0.88 0.00 0.00 0.00 0.00 1.92 0.00 3.12 K alternative_acceptor Ard1,noncoding_11800 chr3L + chr3L_9965498_9965994;chr3L_9965498_9966021 chr3L_9965498_9965980 chr3L_9965419_9965497;chr3L_9966022_9966054 92.86 NA NA 75.00 NA NA 100.00 NA 100.00 100.00 NA 87.50 NA NA NA 87.50 NA NA NA 66.67 NA NA NA NA NA NA 100.00 71.43 100.00 NA NA NA NA 100.00 NA NA NA NA NA 100.00 100.00 83.33 NA NA 83.33 81.82 NA 85.71 100.00 NA NA NA NA NA NA NA NA 92.86 K alternative_donor Bin1,I_chr3R_12012377_12012433 chr3R - chr3R_12012361_12012457 chr3R_12012361_12012433 chr3R_12012277_12012360;chr3R_12012458_12012533 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.34 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Pld,I_chr2R_2130639_2136916,RI_chr2R_2138358_2141112 chr2R + chr2R_2130225_2136916 chr2R_2130224_2130225;chr2R_2136916_2136917 chr2R_2130127_2130224;chr2R_2136917_2137016 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 5.26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Ate1 chr2R - chr2R_16143315_16143390 chr2R_16143314_16143315;chr2R_16143390_16143391 chr2R_16143133_16143314;chr2R_16143391_16143540 0.00 6.67 2.38 1.47 0.00 0.00 7.14 3.70 1.49 NA 0.00 0.00 0.00 12.50 0.00 2.27 10.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 4.17 3.45 0.00 0.00 0.00 0.00 0.00 5.88 4.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 8.00 3.23 0.00 3.51 2.13 5.41 0.00 0.00 5.88 0.00 0.00 0.00 0.00 K intron_retention Dscam,I_chr2R_3212234_3216793,I_chr2R_3212243_3212342,F_chr2R_3219886_3228832,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3213870_3216793 chr2R_3213869_3213870;chr2R_3216793_3216794 chr2R_3213657_3213869;chr2R_3216794_3216856 21.43 28.21 33.33 41.03 32.35 32.26 25.93 25.93 23.88 16.28 22.22 25.00 25.00 24.00 29.63 42.86 21.43 19.05 33.33 17.31 22.73 3.92 27.27 14.29 18.18 22.22 22.64 25.45 10.67 12.00 19.35 9.09 5.88 26.47 10.34 7.41 19.23 23.68 18.31 16.07 0.00 25.81 33.33 25.00 5.00 9.26 11.63 0.00 23.08 26.67 19.57 20.00 15.38 11.76 21.43 24.32 16.67 7.41 K alternative_acceptor E(z),RI_chr3L_10629194_10629525,RI_chr3L_10629541_10629723 chr3L - chr3L_10629194_10629723 chr3L_10629541_10629723 chr3L_10629724_10629823;chr3L_10629096_10629193 2.94 1.23 2.27 4.35 3.03 1.92 3.57 3.23 2.20 3.12 0.00 7.53 3.92 7.32 2.17 3.28 2.94 0.00 2.56 2.56 2.17 7.32 1.72 2.25 4.44 2.50 4.11 2.22 4.35 3.92 2.70 2.94 6.67 5.80 2.17 8.00 1.32 3.39 2.17 3.80 6.67 3.19 2.44 4.44 5.26 4.44 3.53 5.00 1.90 1.19 1.94 3.57 0.00 2.50 2.22 1.28 1.12 8.33 N intron_retention CG12054 chr3R + chr3R_27051463_27051534 chr3R_27051462_27051463;chr3R_27051534_27051535 chr3R_27051535_27051798 65.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 65.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG7028,I_chr3L_207277_208117 chr3L - chr3L_209375_209449 chr3L_209375_209434 chr3L_209142_209374;chr3L_209450_209710 4.65 9.26 1.37 3.29 4.26 3.85 8.60 5.47 2.21 3.57 0.00 6.06 6.67 1.69 22.73 2.30 2.08 4.05 8.47 4.65 5.88 0.00 5.63 5.17 0.00 3.77 6.02 7.55 7.55 5.88 4.58 6.06 6.67 4.72 7.69 2.13 6.38 2.94 5.56 8.79 2.50 3.65 3.57 4.41 2.50 6.45 2.13 3.45 5.60 4.41 9.86 6.82 0.00 5.26 7.50 2.08 9.09 1.64 K alternative_acceptor CG32809,RI_chrX_1585164_1585239,RI_chrX_1585391_1586471,I_chrX_1589508_1589564 chrX - chrX_1585164_1585239 chrX_1585167_1585239 chrX_1585240_1585339;chrX_1585122_1585163 66.67 NA NA NA NA NA NA NA 72.73 NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor Amun,I_chrX_11607839_11608272,I_chrX_11607842_11608105,I_chrX_11607842_11608125,RI_chrX_11607842_11608272 chrX - chrX_11607842_11608590 chrX_11607842_11608507 chrX_11607788_11607841;chrX_11608591_11608810 52.17 54.17 45.45 53.12 43.48 52.17 48.15 57.50 36.92 38.46 56.00 54.55 50.00 55.00 55.17 54.84 63.16 63.16 40.91 39.39 47.62 36.00 70.59 56.25 58.82 78.95 68.42 55.56 34.09 28.26 45.16 25.49 32.53 51.16 32.00 48.28 55.56 69.23 72.00 35.82 46.15 50.00 57.14 26.47 26.53 52.38 68.75 28.93 55.56 42.86 57.89 58.33 42.31 66.67 41.18 63.16 57.89 27.21 K jcn_only_AA Xe7,RI_chr3R_1491850_1491919,CRI_chr3R_1493111_1493414 chr3R - chr3R_1491850_1491919 chr3R_1491868_1491919 chr3R_1491920_1491944;chr3R_1491790_1491849 94.44 92.68 92.50 95.59 100.00 95.45 92.59 96.61 93.75 95.00 92.31 93.59 95.83 90.00 93.62 94.29 97.30 94.29 97.87 90.28 89.19 92.71 97.85 96.15 95.24 95.65 98.46 97.62 91.43 93.75 97.18 93.85 91.07 92.00 87.80 90.24 96.30 96.00 93.90 95.00 93.33 93.24 94.44 91.67 96.00 92.98 94.52 97.39 98.75 95.95 90.16 96.23 98.41 85.00 94.74 95.18 95.83 92.91 K intron_retention CG3651,I_chr2L_22124217_22124661 chr2L + chr2L_22122181_22122250 chr2L_22122180_22122181;chr2L_22122250_22122251 chr2L_22121946_22122180;chr2L_22122251_22123681 0.00 0.00 0.00 1.22 0.00 0.91 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.56 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Lis-1 chr2R + chr2R_12066458_12069485 chr2R_12066458_12069070;chr2R_12069171_12069485 chr2R_12069071_12069170 chr2R_12066383_12066457;chr2R_12069486_12069595 1.61 0.00 0.00 2.94 0.00 0.00 3.39 1.85 2.25 0.00 3.57 1.41 3.23 0.00 2.22 0.00 2.63 0.00 2.50 1.41 0.00 0.00 1.67 3.70 0.00 4.55 3.57 5.00 10.00 2.86 0.00 6.67 6.25 0.00 0.00 0.00 1.85 0.00 0.00 2.56 NA 1.56 7.14 0.00 0.00 0.00 0.00 5.88 3.28 0.00 2.04 2.56 0.00 0.00 0.00 2.86 3.12 6.67 K alternative_acceptor CG11006,F_chr3L_12799159_12799339 chr3L + chr3L_12799438_12799952;chr3L_12799438_12800192;chr3L_12799438_12800078;chr3L_12799438_12799967 chr3L_12799438_12799955 chr3L_12799340_12799437;chr3L_12800193_12800930 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 NA 8.33 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 K intron_retention CG7156 chr3R - chr3R_14067362_14067438 chr3R_14067361_14067362;chr3R_14067438_14067439 chr3R_14067122_14067361;chr3R_14067439_14067622 100.00 100.00 NA NA NA NA 100.00 NA 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA 100.00 100.00 NA NA 100.00 NA 90.91 100.00 NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 93.33 NA 100.00 NA 90.00 NA NA NA 91.67 100.00 NA 100.00 100.00 NA NA NA 100.00 NA 100.00 K jcn_only_AD glo,I_chr3R_7644679_7644739,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7644683_7644932;chr3R_7644683_7644739;chr3R_7644683_7644908;chr3R_7644683_7644743 chr3R_7644683_7644880 chr3R_7644583_7644682;chr3R_7644933_7644980 0.00 0.00 0.00 0.00 2.27 0.00 0.73 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.97 1.01 2.50 NA 1.02 0.51 0.00 0.50 0.00 0.00 0.00 1.19 0.63 0.79 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.59 0.00 0.00 0.00 0.78 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 K intron_retention eIF2B-beta chrX + chrX_2599959_2600026 chrX_2599958_2599959;chrX_2600026_2600027 chrX_2599573_2599958;chrX_2600027_2600183 0.00 0.00 0.00 1.41 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention wol chr2L - chr2L_8301880_8301935 chr2L_8301879_8301880;chr2L_8301935_8301936 chr2L_8301345_8301879;chr2L_8301936_8302332 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31279,CG17565 chr3R + chr3R_12258904_12258959 chr3R_12258903_12258904;chr3R_12258959_12258960 chr3R_12258752_12258903;chr3R_12258960_12259216 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 4.17 11.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.17 NA 0.00 0.00 2.70 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 K intron_retention CG15896,CG3815 chrX + chrX_6186702_6186767 chrX_6186701_6186702;chrX_6186767_6186768 chrX_6185428_6186701;chrX_6186768_6187198 0.00 0.00 0.00 5.56 NA 0.00 NA 0.00 4.35 NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 6.25 0.00 0.00 0.00 0.00 NA NA 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 3.23 0.00 0.00 NA 0.00 0.00 0.00 4.35 0.00 0.00 K jcn_only_AA bip2,RI_chr4_481674_487126,RI_chr4_483128_487126,RI_chr4_486609_487126 chr4 - chr4_485355_485422 chr4_485367_485422 chr4_485423_485854;chr4_485008_485354 95.69 NA NA NA NA NA 92.31 100.00 100.00 NA NA 100.00 NA 96.15 90.48 94.59 95.45 NA 100.00 100.00 95.65 NA NA NA NA NA NA NA NA NA 95.24 NA NA 95.74 NA NA NA NA NA NA NA 94.87 NA 91.30 NA NA NA 100.00 97.22 NA NA NA NA NA 95.00 NA NA NA K intron_retention Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19545538_19552816 chr2R_19545537_19545538;chr2R_19552816_19552817 chr2R_19545503_19545537;chr2R_19552817_19553410 25.81 22.50 30.99 52.73 22.03 31.58 35.44 35.35 29.87 16.67 22.37 36.64 16.39 26.87 46.27 40.45 25.81 41.07 27.71 30.28 23.21 40.38 20.00 21.05 26.76 27.27 31.63 34.78 38.78 30.00 25.60 22.22 31.37 29.91 22.81 38.67 17.28 14.29 20.24 21.30 20.00 33.88 37.78 17.71 20.00 19.15 32.14 16.92 25.56 37.14 20.41 22.22 20.83 18.18 31.08 15.56 22.86 16.98 K intron_retention CG34417,I_chrX_6471146_6471201,I_chrX_6477212_6479725,I_chrX_6477377_6479725,F_chrX_6478056_6479733,RI_chrX_6482284_6482336 chrX + chrX_6479819_6479880 chrX_6479818_6479819;chrX_6479880_6479881 chrX_6479734_6479818;chrX_6479881_6479983 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 4.69 NA 0.00 3.77 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.27 0.00 0.00 5.71 NA 0.00 0.00 14.29 0.00 2.33 0.00 0.00 0.00 0.00 0.00 3.77 0.00 1.43 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 1.85 0.00 0.00 K jcn_only_AD CG9795,I_chr3R_151216_151418 chr3R + chr3R_151184_151418;chr3R_151216_151418;chr3R_151212_151418 chr3R_151180_151418 chr3R_151419_151518;chr3R_151116_151179 3.12 NA 0.00 4.17 0.00 9.09 4.35 0.00 0.00 0.00 NA 0.00 NA NA NA 2.94 5.00 4.00 4.76 4.55 NA 0.00 2.33 3.12 NA NA 0.00 NA NA NA 7.41 5.00 NA 0.00 NA 0.00 11.11 4.35 3.33 7.69 NA 0.00 0.00 3.03 4.00 4.00 3.12 NA 2.86 10.00 3.12 0.00 NA NA 4.00 3.85 0.00 4.55 K alternative_donor Rcd1 chr2R - chr2R_10039432_10040098 chr2R_10039432_10039568 chr2R_10039112_10039431;chr2R_10040099_10040144 100.00 93.33 100.00 92.86 100.00 93.33 100.00 95.65 96.77 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 94.74 97.14 100.00 95.83 100.00 100.00 94.12 100.00 100.00 100.00 100.00 94.44 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 94.12 100.00 100.00 91.67 100.00 96.15 92.86 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor p53,CG17119,sav chr3R - chr3R_18878922_18879303 chr3R_18878922_18879078 chr3R_18878845_18878921;chr3R_18879304_18879498 100.00 NA 83.33 87.50 NA 80.00 100.00 100.00 85.71 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 91.67 83.33 NA 90.91 85.71 NA 100.00 100.00 NA NA 100.00 80.00 NA 100.00 100.00 NA 100.00 80.00 NA 85.71 100.00 NA 83.33 100.00 100.00 NA 85.71 100.00 100.00 92.31 NA 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 K cassette gukh,I_chr3R_14846503_14846650 chr3R + chr3R_14839172_14846650 chr3R_14839172_14841512;chr3R_14844206_14846650 chr3R_14841513_14844205 chr3R_14838988_14839171;chr3R_14846651_14846750 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 50.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20336550_20339244 chr2L_20336549_20336550;chr2L_20339244_20339245 chr2L_20336470_20336549;chr2L_20339245_20339375 9.71 9.71 6.59 7.41 8.22 4.62 18.37 14.29 13.10 8.45 9.80 6.43 15.91 10.29 11.63 7.25 8.57 8.22 18.18 10.07 8.20 6.72 9.27 9.92 9.30 7.89 15.00 13.79 7.05 8.40 9.38 13.24 5.75 11.29 14.29 14.95 7.10 6.60 10.22 7.38 14.29 11.11 10.61 10.16 9.32 10.07 12.12 9.33 6.90 16.95 8.21 10.39 8.82 11.76 13.98 8.40 8.63 12.50 K jcn_only_AD hang,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16326733_16327197 chrX_16326745_16327197 chrX_16327198_16328171;chrX_16324959_16326732 62.35 57.24 62.60 48.80 56.92 61.61 65.03 52.22 60.13 84.87 58.62 57.69 66.13 54.55 54.39 60.87 53.79 51.63 63.43 57.52 52.00 64.51 64.65 66.67 67.27 54.47 64.05 76.15 57.48 68.10 57.46 61.02 58.71 51.36 68.03 58.14 60.49 62.50 63.89 73.00 60.94 64.37 63.64 64.95 63.22 67.90 65.00 62.25 60.08 72.53 62.35 66.96 69.33 67.69 61.58 64.10 50.57 69.14 N alternative_acceptor SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_17031773_17033340 chr3R_17031773_17031841 chr3R_17031724_17031772;chr3R_17033341_17033389 34.84 20.00 20.00 60.00 NA 20.00 30.77 37.50 41.67 25.00 66.67 15.38 66.67 50.00 25.00 30.00 33.33 50.00 20.00 20.00 100.00 33.33 38.46 40.00 33.33 NA 40.00 47.06 25.00 42.86 30.00 33.33 50.00 40.00 60.00 44.44 22.22 11.11 42.86 23.08 37.50 37.50 33.33 42.86 33.33 42.86 16.67 60.00 28.57 33.33 36.36 50.00 NA 40.00 25.00 33.33 NA NA K intron_retention cana,CG33695 chr2L + chr2L_11278486_11278574 chr2L_11278485_11278486;chr2L_11278574_11278575 chr2L_11278394_11278485;chr2L_11278575_11278673 3.77 0.00 0.00 3.85 0.00 0.00 5.00 2.44 5.26 7.41 0.00 6.25 0.00 0.00 2.94 2.50 0.00 0.00 12.00 6.67 0.00 25.93 3.85 3.39 22.22 8.33 12.77 9.38 12.07 9.76 11.76 1.54 3.12 7.14 4.76 2.33 7.25 3.77 6.58 3.28 12.73 4.17 0.00 4.65 5.81 5.95 5.08 2.65 9.09 2.78 3.92 0.00 3.28 0.00 0.00 3.33 1.67 1.77 K intron_retention RI_chr3L_17480321_17481164,Oatp74D,chr3L_17480319_17480976.0,I_chr3L_17480594_17481164,I_chr3L_17500359_17500724 chr3L + chr3L_17480290_17481164 chr3L_17480289_17480290;chr3L_17481164_17481165 chr3L_17480274_17480289;chr3L_17481165_17481264 80.00 100.00 88.89 80.95 NA NA 75.00 92.00 68.42 NA NA 75.00 87.50 78.57 NA 91.30 71.43 60.00 81.82 70.00 NA 83.33 60.00 NA NA NA 81.82 NA NA NA NA NA NA 82.61 88.89 NA 80.00 NA NA 80.00 NA 76.47 87.50 63.64 NA NA NA NA 80.00 100.00 63.64 NA NA NA NA NA NA NA K intron_retention Pep,I_chr3L_17637180_17637918 chr3L - chr3L_17637180_17637990 chr3L_17637179_17637180;chr3L_17637990_17637991 chr3L_17637080_17637179;chr3L_17637991_17638018 10.82 NA 15.38 2.90 NA NA NA 17.78 6.45 NA NA 6.48 18.75 12.50 12.50 16.67 14.29 NA 0.00 13.64 NA 16.67 10.53 10.53 NA 0.00 29.41 11.48 11.76 5.88 11.54 4.76 5.63 17.65 11.11 12.50 NA NA 13.33 15.56 5.80 11.76 25.00 8.33 0.00 2.35 12.00 9.21 11.11 3.45 4.55 8.33 NA 10.00 5.00 0.00 NA 6.15 K jcn_only_AD CG9293,RI_chr2L_13386386_13386487,I_chr2L_13394941_13395015 chr2L - chr2L_13386258_13386529 chr2L_13386258_13386487 chr2L_13386099_13386257;chr2L_13386530_13386587 5.88 6.06 4.26 6.56 7.14 3.85 10.64 3.08 4.12 4.17 0.00 8.82 0.00 2.56 10.00 4.00 10.34 19.23 1.64 2.59 10.34 5.80 11.43 2.56 NA 6.82 12.00 3.03 10.94 9.09 3.92 10.47 3.03 4.23 5.88 5.88 3.85 11.11 4.65 5.81 6.67 5.88 3.33 6.98 11.48 1.06 2.94 7.26 2.67 0.00 6.90 NA 15.22 0.00 4.35 7.69 9.30 12.57 K alternative_donor CEI_chr3R_10927927_10937314,CG6934 chr3R - chr3R_10937912_10957329;chr3R_10937912_10957499 chr3R_10937912_10957457 chr3R_10937315_10937911;chr3R_10957500_10957513 3.70 0.00 10.00 6.25 5.88 0.00 3.70 6.25 1.79 0.00 6.25 4.41 0.00 3.23 0.00 3.12 5.88 2.04 0.00 4.84 10.53 8.57 1.64 2.94 3.33 5.88 0.00 0.00 5.36 5.88 0.00 5.88 7.25 2.63 1.92 5.56 4.08 0.00 4.44 3.64 0.00 3.51 0.00 3.70 7.41 3.12 7.69 6.60 5.26 0.00 4.76 4.00 5.56 10.00 3.57 10.53 0.00 2.70 K intron_retention R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083637_8089184 chr2L_8083636_8083637;chr2L_8089184_8089185 chr2L_8083592_8083636;chr2L_8089185_8089284 66.67 NA 46.67 76.92 NA 66.67 50.00 52.63 57.89 NA 63.64 80.95 63.64 71.43 69.23 66.67 70.00 66.67 64.29 77.78 NA NA NA NA NA 87.50 72.73 NA 68.42 75.00 72.73 NA 54.17 70.59 NA 54.55 NA NA NA 63.16 NA 66.67 53.33 NA NA NA NA 63.33 58.82 NA NA NA NA NA 66.67 NA NA 50.00 K intron_retention CG18228,RpA-70 chr3R - chr3R_4089694_4089750 chr3R_4089693_4089694;chr3R_4089750_4089751 chr3R_4088475_4089693;chr3R_4089751_4089995 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA sec8 chr3R - chr3R_1581962_1582042 chr3R_1581990_1582042 chr3R_1582043_1582444;chr3R_1581386_1581961 100.00 100.00 96.00 100.00 NA 100.00 100.00 97.96 98.57 NA 100.00 100.00 97.67 100.00 100.00 100.00 100.00 95.24 100.00 98.04 100.00 100.00 100.00 96.43 NA 100.00 95.00 NA 100.00 NA 97.50 95.83 97.87 98.36 100.00 NA NA 100.00 NA 97.40 100.00 98.39 100.00 100.00 100.00 100.00 NA 96.49 96.43 100.00 94.12 100.00 NA NA 97.92 96.15 100.00 100.00 K intron_retention Sdc,I_chr2R_17286819_17367595,I_chr2R_17324594_17367595 chr2R - chr2R_17367862_17368518 chr2R_17367861_17367862;chr2R_17368518_17368519 chr2R_17367596_17367861;chr2R_17368519_17368632 0.00 NA NA 6.67 NA 0.00 5.56 0.00 0.00 NA NA 5.26 0.00 4.76 NA 0.00 14.29 NA 0.00 4.55 NA NA NA NA NA 6.25 NA NA NA NA 0.00 NA NA 2.56 NA NA NA NA NA NA NA 3.45 NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA 10.53 NA NA 0.00 K intron_retention CG4747 chr2L + chr2L_10004127_10004534 chr2L_10004126_10004127;chr2L_10004534_10004535 chr2L_10003811_10004126;chr2L_10004535_10004571 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817,snoRNA:Psi28S-2444 chr2R + chr2R_15330745_15330817 chr2R_15330744_15330745;chr2R_15330817_15330818 chr2R_15330665_15330744;chr2R_15330818_15330917 10.86 8.70 25.00 25.00 13.04 5.00 7.27 3.33 14.81 0.00 11.76 14.00 18.75 22.22 10.71 12.50 0.00 17.65 NA 10.91 15.79 1.45 20.00 8.33 5.56 0.00 23.68 37.93 1.47 13.04 3.80 3.85 0.00 18.75 8.33 11.76 8.89 0.00 9.09 8.00 12.50 14.00 15.00 0.00 4.17 9.52 17.50 0.00 12.07 9.68 12.20 0.00 10.81 11.63 15.79 14.00 11.76 9.30 K intron_retention Dscam,I_chr2R_3212234_3216793,I_chr2R_3212243_3212342,F_chr2R_3219886_3228832,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3212243_3214121 chr2R_3212242_3212243;chr2R_3214121_3214122 chr2R_3212143_3212242;chr2R_3214122_3214138 32.29 NA NA 33.33 NA NA NA 31.25 47.06 NA NA NA NA NA NA NA NA NA 60.00 36.36 NA 25.00 37.50 16.67 NA NA NA NA NA 26.67 NA NA NA 50.00 NA NA 35.71 NA 36.36 18.52 NA 27.78 NA 20.00 NA 17.65 NA 30.00 29.41 NA 38.89 NA NA NA NA 33.33 NA NA K jcn_only_AD CG4877 chr3L + chr3L_16379595_16379725 chr3L_16379671_16379725 chr3L_16379726_16380052;chr3L_16379486_16379594 91.30 NA NA NA NA NA 91.30 NA 91.43 NA NA 77.42 NA NA NA 91.30 NA NA NA 87.10 NA NA 95.24 NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA 96.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG10990,noncoding_23570 chrX - chrX_13646061_13649285 chrX_13646061_13648862 chrX_13644619_13646060;chrX_13649286_13649418 97.78 99.12 97.30 94.68 98.96 99.23 97.58 97.73 98.17 99.04 97.35 97.84 96.43 97.48 95.78 96.12 97.18 98.46 97.47 96.10 96.64 97.89 97.76 99.18 100.00 95.78 99.11 100.00 93.75 97.18 96.70 97.87 98.72 97.43 96.72 98.92 98.94 98.67 97.70 99.53 99.12 95.85 97.76 99.32 97.75 98.66 98.13 97.40 95.39 98.99 94.70 98.94 97.78 100.00 97.97 98.80 96.83 97.84 K alternative_donor kay,E_chr3R_25616137_25617114 chr3R + chr3R_25615618_25617114;chr3R_25616533_25617114 chr3R_25616577_25617114 chr3R_25617115_25617214;chr3R_25615520_25615617 93.10 88.46 93.94 98.08 88.00 92.00 94.64 83.61 97.10 93.75 89.29 97.22 82.98 92.00 93.10 98.00 92.59 81.48 83.87 97.98 90.48 91.18 97.67 90.91 96.30 93.10 95.56 96.72 93.18 100.00 91.67 92.31 100.00 97.96 95.45 96.30 98.00 96.30 97.73 94.87 92.31 91.80 92.31 92.00 100.00 91.30 96.15 88.89 96.08 93.33 91.67 88.24 100.00 88.24 92.86 100.00 92.11 90.00 K intron_retention Fbxl4 chrX - chrX_14128796_14128857 chrX_14128795_14128796;chrX_14128857_14128858 chrX_14128600_14128795;chrX_14128858_14128927 5.28 NA NA 10.53 NA NA 7.14 NA 0.00 NA NA 9.09 NA NA NA 6.67 NA 0.00 NA 12.50 NA NA 0.00 0.00 NA 7.14 5.56 NA 30.77 NA NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA 6.67 NA 0.00 NA NA NA NA 10.00 0.00 NA NA NA NA NA 5.00 NA NA K jcn_only_AD Roughened,I_chr3L_1861677_1861777,I_chr3L_1861677_1861929,I_chr3L_1861677_1862177 chr3L - chr3L_1861677_1861777;chr3L_1861677_1862060 chr3L_1861677_1862177 chr3L_1861577_1861676;chr3L_1862178_1862277 0.31 0.84 0.44 0.47 0.00 0.54 0.26 0.60 0.51 0.00 0.68 0.40 0.68 0.32 0.00 0.00 0.00 0.31 0.31 0.33 0.00 0.51 0.00 0.00 0.00 0.00 0.33 0.00 0.22 0.00 0.30 0.00 0.00 0.78 0.51 0.19 0.62 0.00 0.42 0.91 0.00 0.75 0.64 0.91 0.36 0.14 0.00 0.00 0.75 0.00 0.51 0.43 0.31 0.37 0.48 0.00 0.00 0.00 K intron_retention Trc8 chr3R - chr3R_25325038_25325093 chr3R_25325037_25325038;chr3R_25325093_25325094 chr3R_25324969_25325037;chr3R_25325094_25325221 79.22 86.21 77.33 92.86 92.50 84.48 82.31 79.63 84.18 72.73 79.37 77.44 82.61 86.15 84.13 81.25 78.12 89.06 77.17 88.02 89.39 33.33 94.44 83.78 80.85 87.80 82.93 84.13 68.24 62.50 76.61 74.07 75.00 78.03 75.00 81.61 78.46 82.76 79.22 68.84 75.82 86.58 84.21 76.53 64.71 71.33 73.20 68.70 82.86 75.79 77.55 60.78 81.54 65.62 82.72 75.00 78.64 73.58 K jcn_only_AD Tis11,CR33963 chrX + chrX_12553470_12554566 chrX_12553582_12554566 chrX_12554567_12554665;chrX_12553442_12553469 100.00 100.00 100.00 100.00 NA 100.00 100.00 98.00 100.00 100.00 NA 98.48 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 98.11 100.00 100.00 NA NA NA 98.67 100.00 100.00 96.30 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 K alternative_acceptor cryptocephal,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21318420_21318515 chr2L_21318420_21318484 chr2L_21318351_21318419;chr2L_21318516_21318548 100.00 100.00 99.82 99.91 100.00 100.00 100.00 100.00 99.90 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.79 100.00 99.87 100.00 100.00 100.00 99.85 100.00 100.00 100.00 99.85 100.00 100.00 99.87 100.00 100.00 99.84 100.00 100.00 100.00 100.00 99.90 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.81 99.84 100.00 100.00 100.00 99.85 100.00 99.81 100.00 K cassette G9a,I_chrX_145325_145634,I_chrX_145570_145634 chrX + chrX_145325_145634 chrX_145325_145383;chrX_145570_145634 chrX_145384_145569 chrX_145225_145324;chrX_145635_145734 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 NA 88.89 100.00 100.00 100.00 100.00 100.00 88.89 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor U2af50,I_chrX_16252240_16252638 chrX - chrX_16252240_16252843 chrX_16252240_16252638 chrX_16252140_16252239;chrX_16252844_16253100 0.00 0.00 0.00 1.75 0.00 0.00 1.92 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 3.12 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 2.50 0.00 0.00 1.49 0.00 K intron_retention I_chrX_15223901_15223968,HDAC6,I_chrX_15232958_15233665 chrX + chrX_15232738_15232869 chrX_15232737_15232738;chrX_15232869_15232870 chrX_15232706_15232737;chrX_15232870_15232877 28.80 26.67 20.00 50.00 NA 45.45 71.43 42.86 23.08 NA 14.29 21.43 NA 35.71 35.71 26.67 NA 22.22 6.25 27.78 NA 32.14 47.06 26.32 50.00 57.14 40.00 45.45 35.71 35.71 42.11 22.22 28.57 20.00 35.71 17.65 27.27 20.00 26.47 31.25 60.00 29.03 28.57 22.22 21.62 29.03 18.18 41.67 26.67 30.77 28.57 30.77 37.50 30.00 30.00 26.32 13.04 21.21 K intron_retention CG17159,CG17162,noncoding_25215 chrXHet - chrXHet_69232_75250 chrXHet_69231_69232;chrXHet_75250_75251 chrXHet_69195_69231;chrXHet_75251_75479 23.45 NA 9.52 23.81 20.00 NA 22.73 24.00 26.09 NA 0.00 29.41 14.29 NA 27.78 28.57 42.86 NA 26.67 29.73 NA NA 25.00 NA NA 9.52 26.67 NA NA NA 17.65 NA 23.08 24.14 30.77 36.36 11.76 20.00 8.70 26.67 NA 29.63 NA 18.75 NA NA NA NA 20.59 NA 12.50 12.50 NA NA 15.00 NA NA NA K alternative_donor Sans,RI_chr2R_8825985_8826072,I_chr2R_8826501_8826591 chr2R + chr2R_8824595_8825904;chr2R_8824493_8825904 chr2R_8824602_8825904 chr2R_8825905_8825980;chr2R_8824445_8824492 50.00 NA NA 42.86 NA NA NA NA 42.86 NA 0.00 60.00 NA NA NA NA NA NA 50.00 44.44 NA NA 60.00 40.00 NA NA NA NA NA NA 40.00 NA 37.50 50.00 40.00 50.00 50.00 50.00 NA NA NA 50.00 NA 60.00 60.00 44.44 50.00 50.00 55.56 NA 28.57 50.00 60.00 NA 40.00 57.14 66.67 46.15 K alternative_donor Btk29A,I_chr2L_8262681_8277370,I_chr2L_8298341_8298782,I_chr2L_8298341_8300884 chr2L - chr2L_8298341_8300714;chr2L_8298341_8300505 chr2L_8298341_8300817 chr2L_8298241_8298340;chr2L_8300818_8301040 20.00 11.76 14.29 24.32 6.67 23.53 25.71 31.43 20.93 18.75 36.36 22.86 29.17 20.00 36.00 33.33 25.00 13.79 19.05 14.00 22.22 9.09 17.50 21.21 17.39 20.83 17.14 31.82 16.67 18.42 13.04 20.00 8.89 18.18 15.00 12.20 16.67 24.00 23.68 19.15 19.23 30.23 20.00 17.95 5.56 16.00 26.32 16.90 28.57 24.00 25.71 43.75 14.29 43.75 35.29 21.05 36.84 14.29 K alternative_donor Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2364640;chr2L_2361586_2364480;chr2L_2361586_2364836;chr2L_2361586_2365060;chr2L_2361586_2364302;chr2L_2361586_2364312;chr2L_2361586_2364889 chr2L_2361586_2364594 chr2L_2361486_2361585;chr2L_2365061_2365065 8.33 7.41 7.69 7.04 5.71 9.09 14.29 7.50 8.93 5.56 8.33 8.45 11.76 5.26 7.32 6.45 8.33 12.50 6.38 14.55 8.11 11.43 7.69 9.38 7.69 7.50 8.70 12.50 12.50 10.71 8.89 4.00 8.16 5.26 7.69 16.67 7.69 4.76 7.89 8.57 8.33 8.64 10.71 18.52 8.33 10.87 8.33 14.71 8.64 12.00 11.11 6.90 16.67 18.75 9.09 11.11 7.69 7.41 K alternative_donor CG1640,RI_chrX_13265127_13267895,I_chrX_13265553_13267895,I_chrX_13265618_13267895,RI_chrX_13266680_13267895,RI_chrX_13267529_13267895,I_chrX_13271541_13271890 chrX + chrX_13265560_13267895;chrX_13265248_13267895;chrX_13265094_13267895;chrX_13265295_13267895 chrX_13265401_13267895 chrX_13267896_13267973;chrX_13265065_13265093 15.00 9.09 14.81 17.14 16.67 5.00 21.74 23.53 20.45 14.29 15.00 23.68 12.50 27.27 16.00 13.79 20.00 11.11 9.52 14.00 13.64 20.69 26.92 16.67 13.33 17.65 13.79 17.65 15.15 9.68 12.50 12.50 6.38 15.15 22.73 21.05 18.92 14.29 8.82 12.96 5.56 17.14 5.88 18.18 4.00 12.50 15.79 8.11 12.20 19.05 16.13 22.22 14.29 27.27 21.05 12.50 16.67 6.56 K jcn_only_AD MED26,I_chr4_807836_808040,I_chr4_807836_808089 chr4 - chr4_807836_808040;chr4_807836_808077 chr4_807836_808006 chr4_807736_807835;chr4_808078_808140 5.36 10.81 4.26 18.56 0.00 10.00 13.73 6.73 7.04 11.54 NA 7.78 8.16 6.38 4.76 0.98 5.71 12.12 7.55 5.00 0.00 0.00 3.92 13.51 8.70 2.94 18.64 12.50 3.95 0.00 0.00 0.00 1.56 7.22 0.00 13.33 NA 13.04 NA 2.13 7.32 8.86 2.70 7.89 NA 0.00 8.70 3.09 4.08 4.00 2.56 2.44 28.57 NA 3.23 NA NA 0.00 K intron_retention I_chrX_3345099_3416710,CG10802,noncoding_21742,CG10803,I_chrX_3380218_3380345 chrX + chrX_3377946_3378002 chrX_3377945_3377946;chrX_3378002_3378003 chrX_3377920_3377945;chrX_3378003_3378653 8.57 5.77 8.00 9.09 14.29 14.29 3.94 9.21 9.64 4.62 10.87 5.10 8.57 9.38 11.76 9.43 9.09 15.38 9.76 14.52 3.33 13.70 9.68 5.41 21.28 6.06 12.94 12.70 14.29 5.66 11.11 5.79 8.75 10.91 7.35 18.18 4.60 2.60 7.14 5.52 11.21 8.24 5.26 5.36 5.21 7.58 6.25 6.00 16.39 3.85 10.61 4.55 9.09 8.51 7.14 8.86 4.17 2.44 K jcn_only_AA MB8.chr3R.pasa.66,CG1091,I_chr3R_2909743_2909904,I_chr3R_2910029_2910096,RI_chr3R_2910490_2910686,RI_chr3R_2911041_2911135,RI_chr3R_2946518_2946663 chr3R - chr3R_2909743_2909904 chr3R_2909847_2909904 chr3R_2909905_2910004;chr3R_2909729_2909742 100.00 97.83 100.00 100.00 100.00 NA 96.92 100.00 98.98 100.00 100.00 100.00 100.00 96.43 100.00 98.25 100.00 100.00 100.00 100.00 100.00 96.30 98.72 98.81 97.67 NA 97.87 95.24 100.00 98.21 100.00 93.48 96.97 98.77 100.00 100.00 100.00 100.00 98.75 98.78 100.00 97.26 97.44 100.00 100.00 97.26 100.00 95.12 100.00 98.84 98.55 100.00 98.63 100.00 100.00 100.00 99.02 100.00 K jcn_only_AD ph-d chrX - chrX_2015658_2017014 chrX_2015658_2015729 chrX_2015184_2015657;chrX_2017015_2017061 0.00 NA NA 0.00 NA NA 0.00 0.00 5.00 NA NA NA NA 4.17 NA 0.00 NA NA 0.00 0.00 NA 13.04 0.00 NA NA NA NA NA NA 3.85 NA NA 0.00 3.33 NA NA 0.00 NA NA 2.94 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 K jcn_only_AD ena chr2R + chr2R_15029352_15029711;chr2R_15029276_15029711 chr2R_15029330_15029711 chr2R_15029712_15029859;chr2R_15029150_15029275 1.59 NA 0.00 6.25 3.70 NA 0.00 NA 1.67 0.00 NA 4.65 4.17 3.12 13.64 1.59 0.00 NA 4.76 4.00 NA NA 0.00 0.00 NA NA 0.00 NA NA 9.38 0.00 NA 4.76 2.44 0.00 0.00 NA 0.00 NA 0.00 NA 5.41 0.00 4.35 NA NA NA NA 0.00 NA 2.38 4.00 NA NA 0.00 NA 0.00 NA K intron_retention Pk17E,I_chrX_18683130_18684538,I_chrX_18685493_18699326 chrX + chrX_18685115_18685178 chrX_18685114_18685115;chrX_18685178_18685179 chrX_18684991_18685114;chrX_18685179_18685277 0.00 NA NA 0.00 NA NA 5.71 4.35 0.00 NA NA 3.85 NA NA NA 0.00 NA NA NA 3.70 NA 0.00 0.00 0.00 NA NA 12.50 NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA 0.00 NA 7.69 NA 0.00 NA 0.00 0.00 0.00 3.85 NA 0.00 11.76 NA NA NA 0.00 NA NA N mutually_exclusive RpL3,E_chr3R_7047964_7050565,I_chr3R_7048451_7049116,I_chr3R_7048452_7048540,I_chr3R_7048452_7049579,snoRNA:Me18S-A425,snoRNA:Psi28S-291,E_chr3R_7049697_7049750,I_chr3R_7049970_7050189,snoRNA:Me28S-G2017 chr3R + chr3R_7048452_7049579,chr3R_7049970_7050212 chr3R_7048452_7048809,chr3R_7049253_7050212 chr3R_7049580_7049969 chr3R_7048810_7049252 chr3R_7048352_7048451;chr3R_7050213_7050289 0.00 NA NA 0.00 NA NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 43.75 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention AT25722,CG3376 chr2R + chr2R_20151621_20151682 chr2R_20151620_20151621;chr2R_20151682_20151683 chr2R_20151326_20151620;chr2R_20151683_20151868 0.00 0.00 1.94 2.50 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.77 0.00 0.00 1.26 0.00 0.00 0.00 0.00 0.44 0.00 0.00 1.64 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 2.04 0.00 1.99 0.00 0.00 0.00 0.00 1.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG14882 chr3R + chr3R_12269100_12269224 chr3R_12269100_12269149 chr3R_12268934_12269099;chr3R_12269225_12270541 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Sec16,I_chrX_12501913_12502010,I_chrX_12502899_12502973 chrX + chrX_12499422_12501730 chrX_12499421_12499422;chrX_12501730_12501731 chrX_12498897_12499421;chrX_12501731_12501912 0.00 0.00 0.00 0.00 0.00 7.14 2.44 0.00 2.53 11.76 8.33 3.17 NA NA 10.00 0.00 0.00 0.00 5.26 3.45 0.00 0.00 2.70 0.00 0.00 NA 3.12 2.70 0.00 0.00 5.26 0.00 2.56 4.76 0.00 0.00 2.02 NA 0.00 1.67 0.00 3.45 NA 5.88 0.00 0.00 0.00 6.25 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 5.26 0.00 K multi_cassette Ten-m,EI_chr3L_22298865_22299141,I_chr3L_22300015_22300646,I_chr3L_22374182_22399991 chr3L - chr3L_22296709_22300646 chr3L_22296709_22296798;chr3L_22297211_22297345;chr3L_22297630_22298066;chr3L_22298865_22299141;chr3L_22300015_22300646 chr3L_22296799_22297210;chr3L_22297346_22297629;chr3L_22298067_22298864;chr3L_22299142_22300014 chr3L_22296163_22296708;chr3L_22300647_22300652 88.89 80.00 80.00 41.67 100.00 100.00 83.33 75.00 76.47 100.00 100.00 91.67 75.00 80.00 100.00 83.33 80.00 100.00 100.00 76.92 75.00 100.00 91.67 71.43 100.00 100.00 63.64 100.00 75.00 88.89 75.00 100.00 85.71 81.82 100.00 87.50 75.00 66.67 88.89 100.00 100.00 73.33 100.00 85.71 100.00 50.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 100.00 87.50 100.00 100.00 66.67 K cassette l(2)gl,I_chr2L_12929_13559,I_chr2L_12929_13682,I_chr2L_15712_16650,I_chr2L_17208_18260,I_chr2L_17213_21135,RI_chr2L_20021_20830,I_chr2L_20974_21065 chr2L - chr2L_12929_13682 chr2L_12929_13559;chr2L_13626_13682 chr2L_13560_13625 chr2L_12829_12928;chr2L_13683_13782 100.00 97.56 100.00 93.55 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 98.96 100.00 97.50 98.48 100.00 100.00 90.00 100.00 96.55 93.55 97.30 98.15 100.00 100.00 100.00 100.00 94.12 98.46 97.56 100.00 100.00 93.33 98.63 100.00 98.28 100.00 95.65 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_715043_715839 chr4_715042_715043;chr4_715839_715840 chr4_714007_715042;chr4_715840_715963 10.71 4.76 14.29 15.00 15.38 10.00 10.00 18.18 10.71 NA 0.00 17.65 20.00 20.00 12.50 13.04 0.00 0.00 11.54 11.43 0.00 NA 5.56 7.69 NA NA 5.00 NA NA 0.00 10.53 NA NA 10.34 NA NA 0.00 NA NA 5.88 NA 15.56 7.41 15.38 NA 14.29 NA 11.11 15.38 NA 13.04 12.50 NA NA 7.14 NA NA 7.14 K intron_retention CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_162754_162825 chr4_162753_162754;chr4_162825_162826 chr4_160896_162753;chr4_162826_163517 0.00 0.00 0.00 4.35 0.00 0.00 0.78 2.70 1.08 0.00 0.00 1.40 0.00 0.00 0.91 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 1.56 2.70 0.00 1.12 0.00 0.00 0.00 K intron_retention CG5793,I_chr3R_16953555_16953842 chr3R + chr3R_16953777_16953842 chr3R_16953776_16953777;chr3R_16953842_16953843 chr3R_16953677_16953776;chr3R_16953843_16953939 15.89 6.67 NA NA NA NA NA 20.00 0.00 NA NA 4.76 NA 5.56 NA 0.00 NA NA NA 18.52 NA 23.53 28.57 8.33 NA NA 31.58 29.41 36.84 20.00 58.33 0.00 0.00 0.00 11.11 NA 23.53 31.25 15.79 18.75 33.33 15.00 NA 12.50 18.52 13.16 15.00 17.65 9.09 36.84 16.00 NA 17.65 NA 7.14 20.00 14.71 9.80 K intron_retention I_chr2R_18485635_18487415,CG4269 chr2R + chr2R_18486956_18487415 chr2R_18486955_18486956;chr2R_18487415_18487416 chr2R_18486704_18486955;chr2R_18487416_18487515 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 3.77 0.00 NA 14.29 NA 0.00 14.81 11.76 0.00 NA 0.00 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA K jcn_only_AA CG17271,I_chr3R_16645217_16645392,RI_chr3R_16647104_16647149 chr3R - chr3R_16647089_16647149 chr3R_16647104_16647149 chr3R_16647150_16647218;chr3R_16647021_16647088 0.56 0.50 0.00 0.58 0.00 0.00 1.50 0.70 0.00 0.55 0.00 0.90 0.00 0.00 1.04 0.00 0.85 1.49 0.00 1.03 0.76 0.00 0.00 0.00 1.28 0.00 0.96 1.62 0.85 0.88 0.00 0.55 1.01 0.74 0.77 0.00 1.01 0.00 1.50 0.63 0.00 0.76 1.08 0.45 1.92 0.41 1.48 1.55 0.00 0.56 0.53 0.00 0.00 1.41 0.61 0.50 0.26 0.78 K intron_retention CG17660 chr2L - chr2L_1709964_1710042 chr2L_1709963_1709964;chr2L_1710042_1710043 chr2L_1709878_1709963;chr2L_1710043_1710103 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Shawn_Tyler,MKP-4 chrX + chrX_19518496_19518560 chrX_19518495_19518496;chrX_19518560_19518561 chrX_19517813_19518495;chrX_19518561_19519803 1.43 5.56 2.27 28.57 0.00 0.00 0.00 2.63 1.43 0.00 0.00 0.00 0.00 7.41 2.70 0.00 0.00 0.00 0.00 8.47 0.00 5.56 4.65 0.00 8.33 8.57 7.69 15.15 16.67 0.00 0.00 0.00 2.70 0.00 0.00 5.56 5.36 0.00 0.00 0.00 22.73 8.00 4.76 2.33 3.70 6.67 4.76 0.00 5.56 4.44 6.06 0.00 0.00 0.00 0.00 2.70 0.00 0.00 K intron_retention CG11299,noncoding_8970,I_chr2R_19619053_19619186 chr2R + chr2R_19601598_19602188 chr2R_19601597_19601598;chr2R_19602188_19602189 chr2R_19601444_19601597;chr2R_19602189_19602201 66.67 NA NA 60.00 NA NA NA 76.47 80.00 NA NA 64.29 63.64 66.67 NA 52.17 NA NA 75.00 61.90 NA NA NA NA NA 70.00 NA NA NA NA NA NA NA 66.67 NA NA NA NA NA 88.89 NA 69.23 58.33 NA NA NA NA 72.73 36.36 NA 70.00 NA NA NA NA NA NA NA K intron_retention eIF-4E,I_chr3L_9394468_9395446,I_chr3L_9394819_9395198,I_chr3L_9394819_9395379 chr3L - chr3L_9393285_9393518 chr3L_9393284_9393285;chr3L_9393518_9393519 chr3L_9393197_9393284;chr3L_9393519_9393618 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA None chrU - chrU_1092478_1092545 chrU_1092492_1092545 83.57 89.34 83.02 81.42 75.00 84.09 84.23 79.30 79.94 78.57 83.13 84.78 79.39 82.76 79.49 85.41 84.25 77.91 82.91 83.57 100.00 100.00 80.70 79.05 100.00 84.26 78.52 100.00 100.00 77.27 80.00 100.00 100.00 79.53 100.00 100.00 100.00 100.00 88.57 77.63 100.00 84.73 85.50 85.81 100.00 77.78 71.64 100.00 83.54 80.77 100.00 88.24 74.63 78.18 79.17 85.19 81.54 78.95 K intron_retention CG5535 chr3L - chr3L_17846200_17846268 chr3L_17846199_17846200;chr3L_17846268_17846269 chr3L_17845610_17846199;chr3L_17846269_17847054 0.32 0.00 0.00 0.35 0.46 0.70 0.22 0.95 0.78 1.10 0.00 0.82 0.00 0.96 0.59 0.52 0.00 0.00 0.00 0.45 0.00 0.34 1.74 0.00 1.26 0.00 0.88 0.91 0.00 0.00 0.00 0.00 0.31 0.42 0.00 0.54 0.00 0.00 0.72 1.05 0.49 0.32 0.84 0.28 0.00 0.65 1.08 0.00 0.17 0.80 0.00 1.85 0.56 0.00 0.00 0.00 0.00 0.71 K intron_retention ras chrX + chrX_10642060_10642130 chrX_10642059_10642060;chrX_10642130_10642131 chrX_10641519_10642059;chrX_10642131_10642839 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD I_chrX_11910759_11910811,CG15735 chrX + chrX_11912974_11913660 chrX_11913359_11913660 chrX_11913661_11913791;chrX_11912677_11912973 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N jcn_only_AA noncoding_4622,CE_chr2R_2237053_2237111 chr2R - chr2R_2237032_2237090 chr2R_2237036_2237090 chr2R_2237091_2237159;chr2R_2236997_2237031 60.64 56.90 60.98 NA 69.23 62.50 61.89 66.30 58.45 100.00 52.14 69.61 61.73 53.06 53.97 58.82 55.22 53.70 62.34 57.32 67.21 62.58 61.76 58.06 46.43 61.43 50.00 66.00 61.31 58.00 65.08 66.67 62.69 68.00 62.50 60.87 55.65 48.94 60.94 68.03 52.38 52.08 70.59 54.76 40.82 64.71 55.70 63.11 56.45 52.17 61.25 52.17 67.86 59.46 55.95 60.42 54.93 55.56 K intron_retention CG31211 chr3R + chr3R_7778488_7778548 chr3R_7778487_7778488;chr3R_7778548_7778549 chr3R_7778391_7778487;chr3R_7778549_7778777 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 4.44 17.86 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 1.30 0.00 0.00 K alternative_donor Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15755345_15755409;chrX_15754284_15755409 chrX_15754356_15755409 chrX_15755410_15755509;chrX_15754256_15754283 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 1.67 0.00 0.00 0.00 0.00 0.00 3.08 1.64 0.00 2.30 0.00 6.38 1.75 0.00 0.00 4.08 0.00 0.00 1.92 0.00 0.00 0.00 1.05 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon Oscillin,I_chr2L_5549082_5549443 chr2L + chr2L_5548710_5549443 chr2L_5548710_5549016 chr2L_5549444_5549704 chr2L_5549017_5549076 chr2L_5548168_5548709 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA Atg18,I_chr3L_8182683_8182941 chr3L + chr3L_8181681_8182401 chr3L_8181681_8182386 chr3L_8180913_8181680;chr3L_8182402_8182545 35.29 41.28 31.19 53.15 22.73 12.64 25.17 35.56 30.91 31.58 16.67 25.00 39.73 25.35 30.00 40.19 35.21 29.73 32.63 29.34 30.88 48.72 42.36 33.09 56.63 60.47 46.85 46.48 42.11 36.36 35.29 22.89 30.54 31.11 39.53 65.48 40.69 48.19 43.60 35.36 40.30 32.12 35.00 52.94 36.89 34.86 37.93 31.25 22.61 36.59 39.29 35.80 21.98 37.00 33.33 37.86 27.61 20.72 K intron_retention LanA,I_chr3L_6208090_6208194 chr3L - chr3L_6198729_6198792 chr3L_6198728_6198729;chr3L_6198792_6198793 chr3L_6196931_6198728;chr3L_6198793_6199007 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.08 0.66 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.06 0.19 0.00 0.04 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention dom,I_chr2R_17217595_17218598,snoRNA:Me28S-G2596,snmRNA:184,I_chr2R_17228865_17228924 chr2R + chr2R_17222098_17224932 chr2R_17222097_17222098;chr2R_17224932_17224933 chr2R_17221879_17222097;chr2R_17224933_17224968 43.78 46.00 42.86 51.00 39.53 39.39 57.38 47.66 50.40 44.90 84.78 42.53 52.17 40.48 42.42 46.88 38.78 66.00 37.70 54.23 51.92 58.16 39.68 39.13 27.27 54.55 28.81 41.07 45.95 46.53 42.00 51.47 40.61 44.66 34.55 49.12 43.08 39.39 35.82 30.33 61.25 43.56 48.98 33.90 34.62 52.63 44.12 40.45 41.18 44.74 33.33 48.48 32.79 39.29 52.38 48.65 45.95 43.78 K jcn_only_AD CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_239517_240531;chr4_239517_239863 chr4_239517_240516 chr4_239079_239516;chr4_240532_240654 98.72 99.11 97.46 99.41 100.00 97.70 99.19 99.49 97.19 100.00 93.90 98.42 100.00 100.00 100.00 100.00 98.96 66.67 99.16 97.57 96.70 98.04 97.78 97.30 94.52 98.72 100.00 97.73 95.83 98.84 98.64 98.33 97.44 98.82 100.00 100.00 96.18 97.47 96.95 97.73 97.14 99.52 98.88 100.00 96.23 100.00 100.00 96.36 99.07 99.10 99.18 98.73 100.00 96.88 98.63 100.00 98.65 97.84 K intron_retention Pk61C,CE_chr3L_129889_141769,I_chr3L_136336_137121,I_chr3L_136336_141563 chr3L + chr3L_136336_137121 chr3L_136335_136336;chr3L_137121_137122 chr3L_136236_136335;chr3L_137122_137133 72.22 82.35 85.71 76.92 71.43 64.71 60.00 100.00 76.32 88.89 69.57 85.19 82.61 86.67 84.21 95.00 91.67 52.17 100.00 37.80 56.52 52.78 66.67 75.00 73.33 81.25 68.75 68.75 35.71 66.67 90.00 NA 56.52 79.17 72.22 69.23 63.16 NA 57.14 66.67 50.00 76.47 83.33 66.67 NA NA NA 50.00 80.00 NA 73.33 69.23 NA NA 80.95 NA NA 50.00 K jcn_only_AA PNGase,I_chr2R_1906759_1906817,I_chr2R_1906899_1906977 chr2R + chr2R_1906899_1906977 chr2R_1906899_1906957 chr2R_1906833_1906898;chr2R_1906978_1907054 99.19 99.20 100.00 98.31 97.83 98.92 98.91 99.47 99.21 98.72 99.19 100.00 98.10 100.00 100.00 99.42 100.00 100.00 98.17 99.57 98.75 99.40 100.00 97.58 99.04 98.08 99.41 98.25 99.19 100.00 98.74 99.49 98.13 98.60 100.00 95.65 100.00 96.97 99.08 99.70 98.90 100.00 100.00 100.00 99.07 98.68 99.26 99.01 98.39 100.00 98.41 99.27 100.00 100.00 97.26 98.20 98.82 99.79 K jcn_only_AD Mnf,RI_chr3L_11108913_11109028 chr3L - chr3L_11111166_11112264;chr3L_11111166_11113709 chr3L_11111166_11113381 chr3L_11110405_11111165;chr3L_11113710_11113829 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 NA 0.00 0.00 2.44 2.86 0.00 2.53 0.00 7.69 0.00 0.00 0.00 0.00 5.71 2.94 2.94 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 4.76 0.00 0.00 0.00 NA 1.59 2.08 NA 0.00 0.00 0.00 0.00 1.23 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG6151,noncoding_12788,I_chr3L_15803949_15804163,RI_chr3L_15803949_15805547,I_chr3L_15804255_15804319 chr3L - chr3L_15803949_15804319 chr3L_15804255_15804319 chr3L_15804320_15804419;chr3L_15803849_15803948 22.22 NA NA NA NA NA NA NA NA NA 22.22 NA NA NA NA 26.32 NA NA NA NA 21.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA 22.22 NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA K alternative_acceptor PNUTS,I_chr2L_870553_871317 chr2L + chr2L_870553_871352 chr2L_870553_871340 chr2L_870478_870552;chr2L_871353_871417 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 96.55 100.00 94.12 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CaMKII,I_chr4_1059085_1060638,I_chr4_1059085_1065781,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1059061_1060638;chr4_1059085_1060638 chr4_1059064_1060638 chr4_1060639_1060704;chr4_1059054_1059060 46.06 NA NA 56.00 NA NA 62.50 30.77 47.37 NA NA 45.45 NA NA NA 38.71 NA NA 45.16 22.22 NA NA 50.00 NA NA NA NA NA NA NA 46.67 NA NA 41.67 NA NA NA NA NA 53.85 NA 38.46 NA NA NA NA NA NA 46.94 NA NA NA NA NA 33.33 NA NA 48.28 K intron_retention RI_chrX_7172561_7252693,CG1677 chrX - chrX_7176210_7176274 chrX_7176209_7176210;chrX_7176274_7176275 chrX_7176057_7176209;chrX_7176275_7177570 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mbf1,RI_chr3L_16567888_16567952,RI_chr3L_16568077_16568816 chr3L + chr3L_16567770_16567952 chr3L_16567769_16567770;chr3L_16567952_16567953 chr3L_16567701_16567769;chr3L_16567953_16568052 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 NA 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 NA 100.00 87.50 100.00 100.00 100.00 100.00 91.67 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 K intron_retention CG2818 chr2L + chr2L_3716105_3716156 chr2L_3716104_3716105;chr2L_3716156_3716157 chr2L_3714647_3716104;chr2L_3716157_3716303 31.11 24.32 18.37 52.00 37.50 34.38 42.11 40.00 27.12 30.00 26.92 38.89 28.57 35.00 41.67 35.29 22.73 29.03 30.00 31.48 28.57 20.51 28.85 33.33 47.83 54.55 28.21 52.94 32.43 20.00 32.79 45.83 29.03 22.86 30.43 66.67 14.89 33.33 23.40 39.02 42.86 38.00 50.00 23.68 20.00 35.29 26.83 33.33 30.61 31.11 27.50 33.33 22.86 32.43 37.04 27.78 24.59 20.37 K intron_retention CG6695 chr3R + chr3R_20484134_20484220 chr3R_20484133_20484134;chr3R_20484220_20484221 chr3R_20484043_20484133;chr3R_20484221_20484326 1.39 0.00 0.00 7.55 0.00 3.33 7.14 4.35 2.50 6.25 8.33 0.00 0.00 4.65 0.00 0.00 0.00 3.12 0.00 3.00 0.00 2.86 2.53 0.00 10.00 12.82 0.00 0.00 4.55 3.39 6.82 0.00 0.00 2.38 0.00 23.68 3.70 6.52 1.54 1.39 9.59 0.00 0.00 5.66 2.35 1.37 0.00 1.19 4.11 2.63 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG11284,I_chrX_8581798_8581850,Ogg1 chrX + chrX_8581776_8581850 chrX_8581798_8581850 chrX_8581851_8581950;chrX_8581698_8581775 1.04 3.33 0.00 0.00 1.49 0.93 1.25 0.48 0.38 2.67 2.04 0.99 0.00 2.36 1.28 1.34 0.00 0.00 1.61 0.40 2.86 1.09 1.57 2.14 3.66 0.78 0.81 1.18 0.00 0.00 1.15 1.04 1.13 1.05 1.92 0.00 2.08 0.86 0.65 1.14 1.89 1.79 1.04 0.00 1.37 1.73 0.00 1.38 0.41 0.82 1.50 0.00 0.00 0.00 1.46 0.00 0.00 0.62 K cassette Actn,I_chrX_1922061_1924247,I_chrX_1922784_1923807,I_chrX_1922784_1923873 chrX - chrX_1922784_1924247;chrX_1922061_1924247 chrX_1922061_1923873,chrX_1922784_1923873;chrX_1923960_1924247 chrX_1923874_1923959 chrX_1921968_1922060;chrX_1924248_1924347 12.24 11.36 12.20 18.18 15.38 9.68 55.56 7.55 11.11 12.50 12.00 8.33 10.53 15.38 13.64 19.35 12.00 4.76 5.71 10.00 8.70 13.89 15.56 13.21 12.90 10.81 11.76 8.33 32.35 10.71 17.65 15.00 8.33 11.11 6.67 2.94 14.00 11.11 18.18 12.07 13.04 14.04 19.05 14.81 16.67 13.73 12.50 14.29 10.17 12.24 10.45 6.45 12.50 18.52 14.29 13.16 10.34 9.38 K jcn_only_AA Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_137255_137311 chr4_137257_137311 chr4_137312_137344;chr4_137167_137254 97.48 100.00 94.87 97.73 NA 97.14 96.40 97.81 95.97 NA 96.67 95.76 98.39 98.77 100.00 95.12 100.00 NA 98.00 97.01 NA NA 96.15 98.08 100.00 NA 92.31 NA NA NA 100.00 93.10 NA 95.83 97.06 NA NA NA 100.00 100.00 NA 95.56 92.50 NA 100.00 100.00 96.43 93.10 95.24 97.67 98.39 100.00 100.00 92.31 100.00 97.96 96.59 97.30 K intron_retention CG9953 chr3L + chr3L_6963720_6963780 chr3L_6963719_6963720;chr3L_6963780_6963781 chr3L_6963651_6963719;chr3L_6963781_6963849 0.00 0.00 0.41 0.00 0.00 0.00 0.60 0.38 0.47 0.79 0.00 0.58 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.35 0.53 1.50 0.00 0.45 0.48 0.00 0.00 0.64 0.00 0.00 0.60 0.00 0.37 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor gro chr3R + chr3R_21868657_21868716;chr3R_21868626_21868716 chr3R_21868622_21868716 chr3R_21868717_21869101;chr3R_21868588_21868621 20.41 20.00 14.29 7.69 0.00 33.33 5.88 10.00 23.33 28.57 NA 20.83 10.00 14.29 11.11 22.22 11.11 25.00 22.22 19.05 22.22 7.69 21.05 28.57 11.11 30.00 27.78 17.65 50.00 38.89 20.00 NA 27.27 28.00 14.29 25.00 29.41 16.67 21.05 26.09 NA 23.81 12.50 16.67 NA 12.50 12.50 28.57 28.57 36.36 12.50 22.22 NA 30.00 15.38 18.18 11.11 11.11 K intron_retention Mical,RI_chr3R_5842549_5844218,I_chr3R_5843939_5844218,I_chr3R_5847106_5863537,I_chr3R_5863483_5863537,I_chr3R_5863613_5868513 chr3R - chr3R_5842549_5844218 chr3R_5842548_5842549;chr3R_5844218_5844219 chr3R_5842449_5842548;chr3R_5844219_5844280 6.25 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA 13.04 NA 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 4.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA 11.76 NA NA NA NA NA 6.67 NA NA NA K intron_retention mmd chrX - chrX_15843910_15845182 chrX_15843909_15843910;chrX_15845182_15845183 chrX_15843553_15843909;chrX_15845183_15845969 11.11 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N jcn_only_AD Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2604280_2604540;chr3L_2604280_2629140 chr3L_2604280_2607692 chr3L_2602428_2604279 100.00 100.00 100.00 94.66 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.60 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CaMKI,I_chr4_466377_467256,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_466816_467256;chr4_467113_467256;chr4_466858_467256;chr4_466798_467256;chr4_466896_467256 chr4_466912_467256 chr4_467257_467272;chr4_466792_466797 8.33 33.33 16.67 10.00 NA 0.00 7.69 10.00 14.29 NA NA 0.00 0.00 0.00 0.00 8.33 0.00 0.00 16.67 20.00 NA NA 0.00 NA 0.00 NA NA NA NA NA 20.00 NA NA 16.67 NA NA NA NA NA NA NA 0.00 16.67 NA NA NA NA NA 9.09 NA NA 20.00 NA NA 0.00 NA NA NA K intron_retention CG31158,I_chr3R_18427389_18429185,CG31159 chr3R + chr3R_18428784_18429185 chr3R_18428783_18428784;chr3R_18429185_18429186 chr3R_18428567_18428783;chr3R_18429186_18429285 53.85 50.00 29.41 43.33 40.00 33.33 52.94 59.09 45.00 65.00 41.67 34.21 60.00 52.38 34.78 66.67 44.44 57.14 52.63 51.11 46.15 77.36 58.06 56.67 64.71 66.67 55.00 63.64 68.18 82.35 61.11 91.67 76.32 53.85 75.00 85.19 44.90 60.00 47.83 80.00 92.31 32.50 46.67 71.88 47.06 78.95 50.00 88.57 46.15 50.00 52.63 53.33 37.50 54.55 44.44 65.00 40.00 78.95 K intron_retention CG17333,CG2202 chrX + chrX_10745675_10745737 chrX_10745674_10745675;chrX_10745737_10745738 chrX_10745094_10745674;chrX_10745738_10746363 3.21 4.76 0.00 5.56 NA 0.00 0.00 4.35 4.17 NA NA 8.82 NA NA 0.00 0.00 NA 0.00 NA 8.51 16.67 3.57 5.41 0.00 0.00 7.69 11.11 9.09 13.04 4.00 NA 0.00 0.00 5.88 8.70 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 6.45 3.85 6.67 5.56 0.00 5.71 2.86 10.53 0.00 6.67 NA 0.00 0.00 0.00 K intron_retention Lk6 chr3R - chr3R_7581394_7581456 chr3R_7581393_7581394;chr3R_7581456_7581457 chr3R_7581171_7581393;chr3R_7581457_7581968 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD fs(1)h,I_chrX_7950171_7952371,RI_chrX_7954192_7954783,I_chrX_7954192_7955240 chrX - chrX_7954192_7954935 chrX_7954192_7954909 chrX_7954092_7954191;chrX_7954936_7954951 62.96 63.41 65.71 62.79 63.64 45.95 78.64 64.10 62.37 63.64 53.33 60.00 69.05 59.21 61.54 68.50 60.87 61.76 58.06 53.08 57.14 52.38 64.44 NA 72.73 49.02 62.96 80.00 NA 76.19 63.27 NA 53.33 51.22 62.96 69.57 65.38 NA 64.00 57.69 NA 68.75 62.50 62.50 NA 57.69 NA 71.79 63.97 NA 63.64 NA NA NA 64.29 NA NA NA K intron_retention p47,Aldh-III,RE_chr2R_3355332_3355720,I_chr2R_3356541_3356614,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3354556_3354725 chr2R_3354555_3354556;chr2R_3354725_3354726 chr2R_3354549_3354555;chr2R_3354726_3354815 88.41 91.43 84.62 93.22 85.71 88.24 97.83 90.28 87.21 84.62 84.21 93.65 87.10 88.37 86.49 95.89 85.71 84.62 81.63 89.89 82.76 90.00 88.46 82.61 90.00 92.31 85.71 NA 100.00 81.25 79.31 96.43 95.45 88.06 76.92 90.91 84.00 73.33 84.38 91.30 92.59 82.28 80.56 77.27 89.47 92.45 91.67 97.73 84.72 92.00 89.66 88.89 94.12 90.00 77.36 81.48 92.59 90.24 K intron_retention itp chr2R + chr2R_20431614_20432949 chr2R_20431613_20431614;chr2R_20432949_20432950 chr2R_20431285_20431613;chr2R_20432950_20432976 32.43 11.76 22.22 40.74 38.46 12.50 28.57 34.78 36.17 NA NA 35.29 52.94 45.45 36.84 39.13 36.36 25.00 33.33 25.00 38.46 NA NA NA NA 36.84 NA NA NA NA 27.78 NA NA 29.17 NA 20.00 13.33 NA NA 9.09 NA 32.43 33.33 NA NA 0.00 NA 0.00 25.93 NA 22.22 NA NA NA 35.48 NA NA NA K intron_retention CG3091,I_chrX_2147635_2147990 chrX - chrX_2146699_2146756 chrX_2146698_2146699;chrX_2146756_2146757 chrX_2146396_2146698;chrX_2146757_2146893 9.78 8.60 10.00 22.95 14.71 10.94 16.39 11.38 10.07 7.14 11.11 12.63 21.05 9.38 10.11 6.76 11.67 11.11 10.17 8.93 7.69 5.33 13.56 11.11 14.29 23.53 15.25 8.70 4.88 1.47 7.08 7.14 5.26 10.87 3.77 16.67 6.52 7.25 8.14 11.67 10.53 9.35 11.76 5.97 6.74 5.13 6.45 10.96 11.34 14.29 4.90 8.57 13.64 9.38 7.41 9.78 6.74 4.17 K jcn_only_AA Dscam,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3251271_3255892;chr2R_3254472_3255892;chr2R_3253610_3255892;chr2R_3250700_3255892;chr2R_3252685_3255892;chr2R_3251854_3255892;chr2R_3252399_3255892;chr2R_3250996_3255892;chr2R_3254133_3255892;chr2R_3252988_3255892 chr2R_3252123_3255892 chr2R_3255893_3255920 4.76 3.03 7.69 4.76 3.12 4.76 0.00 2.44 5.71 NA NA 5.19 NA 12.50 2.33 10.00 0.00 NA 0.00 22.22 0.00 8.00 7.69 0.00 5.26 6.67 4.08 0.00 2.33 0.00 5.56 NA 1.82 6.52 7.69 7.69 4.55 0.00 0.00 4.48 NA 5.88 5.00 5.13 NA 13.04 3.70 8.82 5.56 5.00 6.82 4.35 NA NA 0.00 4.35 0.00 NA K intron_retention eIF-4E,RI_chr3L_9394049_9394139,RI_chr3L_9394054_9394756,I_chr3L_9394308_9394756,RI_chr3L_9394468_9394631,I_chr3L_9394468_9394659,I_chr3L_9394468_9395155,I_chr3L_9394468_9395240,I_chr3L_9394468_9395446,I_chr3L_9394685_9394756,RI_chr3L_9394707_9395016,RI_chr3L_9394707_9395198,I_chr3L_9394707_9395309,I_chr3L_9394819_9394884,I_chr3L_9394819_9395016,I_chr3L_9394819_9395198,I_chr3L_9394819_9395379 chr3L - chr3L_9394054_9395379 chr3L_9394053_9394054;chr3L_9395379_9395380 chr3L_9393954_9394053;chr3L_9395380_9395409 3.51 0.00 3.03 2.73 0.00 3.57 0.00 5.08 3.39 0.00 13.33 8.06 4.55 6.90 4.26 2.94 4.35 11.43 0.00 6.49 0.00 20.00 3.08 3.45 0.00 4.76 6.15 2.60 4.44 0.00 0.00 0.00 6.67 5.88 4.17 1.82 4.44 0.00 6.82 3.51 4.55 7.69 0.00 0.00 5.88 4.17 1.54 5.88 4.11 3.39 5.66 0.00 0.00 0.00 6.06 0.00 0.00 6.78 K jcn_only_AD Pk61C,CE_chr3L_129889_141769,I_chr3L_132531_133824,I_chr3L_133962_134014 chr3L + chr3L_132056_135457;chr3L_131934_135457;chr3L_131959_135457 chr3L_132531_135457 chr3L_135458_135842;chr3L_131849_131933 95.34 90.00 100.00 91.18 90.91 NA NA 90.91 89.29 NA NA 97.73 NA NA 97.44 NA NA NA 100.00 95.24 NA NA 96.00 NA NA 90.62 NA NA NA 95.45 NA NA 92.00 90.00 NA NA 94.12 NA 90.00 100.00 NA 100.00 NA NA NA NA NA NA 96.43 NA NA NA NA NA 100.00 NA NA 100.00 K alternative_acceptor CG7408 chr3L + chr3L_17872349_17872977;chr3L_17872349_17873049 chr3L_17872349_17873076 chr3L_17872262_17872348;chr3L_17873077_17873164 16.67 NA NA 40.00 NA 20.00 18.18 18.18 16.67 NA NA 28.57 14.29 NA 14.29 38.46 NA 16.67 12.50 25.00 NA NA NA NA NA NA NA NA NA NA 14.29 NA NA 12.50 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention CG14414,I_chrX_14474880_14474927 chrX + chrX_14475708_14475781 chrX_14475707_14475708;chrX_14475781_14475782 chrX_14475615_14475707;chrX_14475782_14476207 0.00 0.00 0.00 4.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 K intron_retention Wsck chr3R - chr3R_20454385_20454437 chr3R_20454384_20454385;chr3R_20454437_20454438 chr3R_20452747_20454384;chr3R_20454438_20454794 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 1.59 0.00 0.00 0.00 2.82 1.82 0.00 4.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA tna chr3L + chr3L_10866677_10866756 chr3L_10866677_10866744 chr3L_10866574_10866676;chr3L_10866757_10866874 100.00 100.00 100.00 98.48 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG32685,CREI_chrX_9967445_9972518 chrX - chrX_9969104_9969176 chrX_9969107_9969176 chrX_9969177_9969660;chrX_9969016_9969103 7.37 12.50 7.69 10.42 16.67 9.68 6.52 11.11 7.46 NA 12.50 10.87 11.43 6.25 2.94 8.93 2.86 2.78 4.35 4.11 6.25 3.12 12.50 3.12 3.85 6.38 6.25 15.79 7.32 10.26 6.82 9.09 9.80 12.50 6.25 7.50 7.89 5.00 6.45 5.71 5.88 4.94 7.14 10.87 6.35 7.41 0.00 11.61 6.35 8.89 7.89 12.50 10.71 6.25 10.71 4.65 9.76 6.98 K intron_retention CSN5 chr3R + chr3R_12296786_12296850 chr3R_12296785_12296786;chr3R_12296850_12296851 chr3R_12296215_12296785;chr3R_12296851_12297070 21.05 30.77 NA 31.25 30.77 17.65 16.00 39.29 21.05 NA 23.08 20.51 25.00 21.05 18.52 21.88 22.22 18.18 17.39 13.21 21.43 NA 29.03 20.00 23.53 16.13 22.73 50.00 19.05 17.65 19.23 18.75 23.53 13.79 21.05 23.81 20.00 20.00 22.22 17.24 13.04 21.88 30.77 43.75 10.00 18.92 26.47 10.53 26.47 15.38 32.14 NA 22.73 18.52 20.00 14.81 21.74 23.08 K intron_retention tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_560576_560847 chr3R_560575_560576;chr3R_560847_560848 chr3R_560204_560575;chr3R_560848_561068 100.00 100.00 99.34 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.75 100.00 99.17 99.35 100.00 100.00 99.12 100.00 100.00 100.00 100.00 99.35 100.00 100.00 100.00 100.00 100.00 100.00 99.39 100.00 100.00 100.00 100.00 99.62 100.00 100.00 100.00 98.57 100.00 99.63 99.43 100.00 99.18 99.19 100.00 99.53 100.00 100.00 99.66 100.00 100.00 100.00 100.00 98.94 100.00 100.00 100.00 98.71 K alternative_acceptor chrb,I_chr3L_11481702_11483304 chr3L + chr3L_11488057_11488131 chr3L_11488057_11488116 chr3L_11487979_11488056;chr3L_11488132_11489796 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 92.86 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA K intron_retention Doa,I_chr3R_24715823_24718923,I_chr3R_24747391_24747896 chr3R + chr3R_24714257_24715487 chr3R_24714256_24714257;chr3R_24715487_24715488 chr3R_24714171_24714256;chr3R_24715488_24715606 4.71 1.59 16.67 0.00 6.06 3.33 NA 7.89 3.70 3.57 9.09 9.86 0.00 10.71 8.89 20.69 5.13 0.00 6.67 8.93 0.00 9.09 4.60 4.76 0.00 6.25 6.12 12.50 7.55 0.00 11.76 2.56 1.96 3.85 2.56 4.00 5.56 0.00 8.86 3.23 0.00 5.26 0.00 4.44 5.56 4.65 4.76 1.16 7.81 5.77 8.47 8.16 0.00 0.00 12.50 2.63 0.00 2.86 K intron_retention Dg chr2R - chr2R_11975231_11975809 chr2R_11975230_11975231;chr2R_11975809_11975810 chr2R_11974436_11975230;chr2R_11975810_11975870 9.52 NA 15.79 5.97 NA NA NA 16.67 16.67 0.00 NA NA NA 14.29 5.26 14.81 0.00 0.00 14.29 8.51 NA 7.14 26.67 11.11 NA 12.50 0.00 NA NA NA NA NA 5.00 25.00 6.25 3.64 15.00 NA 0.00 9.52 NA 10.34 NA 16.67 0.00 NA NA 0.00 12.00 NA 20.00 NA NA NA 9.52 NA NA NA K alternative_acceptor shf,I_chrX_6667375_6667947,I_chrX_6668147_6668215 chrX - chrX_6667283_6667998 chrX_6667295_6667998 chrX_6667999_6668047;chrX_6667275_6667282 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG4287,CG32856,mor chr3R - chr3R_11789264_11789320 chr3R_11789268_11789320 chr3R_11789321_11789576;chr3R_11787906_11789263 91.05 83.33 90.91 87.50 90.00 78.57 86.67 88.46 87.18 91.67 92.31 91.18 90.91 100.00 82.35 100.00 93.33 90.91 94.12 96.88 91.67 100.00 96.00 95.45 92.86 92.31 82.35 100.00 80.00 100.00 90.91 91.67 100.00 92.31 90.91 84.62 82.14 93.33 90.48 100.00 NA 86.67 90.00 77.78 88.89 90.91 100.00 NA 88.57 81.25 100.00 93.33 100.00 100.00 92.86 84.62 83.33 NA K alternative_acceptor CAP-D2 chr3R + chr3R_25501579_25501620;chr3R_25501579_25501909 chr3R_25501579_25501655 chr3R_25501398_25501578;chr3R_25501910_25501927 97.73 100.00 100.00 96.36 100.00 100.00 97.14 98.08 100.00 93.33 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 98.70 96.15 96.00 96.55 97.67 96.88 100.00 96.36 96.55 94.29 97.22 88.89 100.00 96.00 98.04 100.00 94.74 93.10 97.50 97.96 96.43 95.00 100.00 96.30 93.55 92.86 100.00 100.00 97.73 100.00 100.00 94.74 96.30 100.00 95.00 100.00 96.43 93.33 94.12 K intron_retention unc-5,I_chr2R_11252444_11252570 chr2R + chr2R_11252147_11252250 chr2R_11252146_11252147;chr2R_11252250_11252251 chr2R_11252018_11252146;chr2R_11252251_11252443 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 1.23 0.00 1.79 2.08 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 2.63 1.22 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_donor Tpi chr3R - chr3R_25959817_25960000;chr3R_25959817_25959887 chr3R_25959817_25959972 chr3R_25959232_25959816;chr3R_25960001_25960005 93.66 97.92 92.31 94.20 96.55 97.96 89.13 92.73 95.58 86.36 93.65 95.10 91.67 92.45 92.42 96.49 96.36 100.00 100.00 96.80 96.61 77.03 94.44 100.00 NA 96.43 93.33 79.55 53.85 92.31 91.18 86.27 66.00 92.54 90.00 95.65 100.00 100.00 95.24 83.33 75.00 95.97 100.00 89.29 83.33 82.26 100.00 74.47 92.39 96.15 95.45 100.00 89.66 97.30 93.67 95.45 89.29 70.37 K cassette trx chr3R - chr3R_10103265_10111930;chr3R_10101091_10111930 chr3R_10101091_10104814,chr3R_10103265_10104814;chr3R_10105264_10111930 chr3R_10104815_10105263 chr3R_10099914_10101090;chr3R_10111931_10112601 100.00 100.00 95.65 98.18 100.00 100.00 92.59 100.00 98.61 100.00 96.00 98.25 100.00 100.00 100.00 98.04 100.00 96.30 96.77 98.18 95.45 98.31 97.83 94.74 94.74 100.00 100.00 93.75 100.00 95.12 100.00 100.00 98.21 100.00 100.00 97.06 97.37 100.00 100.00 100.00 100.00 100.00 95.45 97.56 100.00 100.00 100.00 98.81 98.15 100.00 96.67 95.00 100.00 NA 96.97 100.00 100.00 100.00 K alternative_acceptor CG40439,I_chr2L_22690863_22690905 chr2L - chr2L_22690855_22690905;chr2L_22690836_22690905 chr2L_22690863_22690905 chr2L_22690906_22691005;chr2L_22690763_22690835 0.00 0.00 2.00 1.61 0.00 0.00 0.00 0.85 1.06 0.00 0.00 0.00 0.00 0.00 4.17 1.12 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 3.70 0.00 2.22 0.00 5.88 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 5.88 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 2.02 4.76 3.03 0.00 3.33 NA 0.00 0.00 0.00 0.00 K intron_retention MTF-1 chr3L + chr3L_9429108_9429215 chr3L_9429107_9429108;chr3L_9429215_9429216 chr3L_9428958_9429107;chr3L_9429216_9430461 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 11.11 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 4.65 0.00 0.00 0.00 0.00 NA 0.00 4.76 10.81 18.18 0.00 14.29 12.50 0.00 0.00 0.00 6.45 0.00 NA 0.00 0.00 5.26 2.63 0.00 0.00 0.00 4.76 0.00 3.85 5.56 0.00 2.50 0.00 0.00 0.00 0.00 0.00 3.23 0.00 K alternative_donor I_chr3R_1183570_1183645,CG16708 chr3R - chr3R_1187483_1193642 chr3R_1187483_1193578 chr3R_1185701_1187482;chr3R_1193643_1194012 5.13 1.85 5.77 7.02 6.98 5.77 5.88 11.25 7.14 6.90 9.38 17.11 10.91 10.00 10.17 7.41 12.82 10.87 9.62 7.14 8.57 4.76 4.29 3.39 5.13 6.98 3.33 9.80 17.65 8.51 2.38 2.70 2.17 5.68 5.00 4.08 2.74 2.00 4.00 5.06 0.00 4.72 8.33 1.89 2.70 4.65 2.27 4.55 7.87 1.92 3.33 6.38 2.27 0.00 9.38 2.38 3.61 0.00 K alternative_donor Hairless chr3R + chr3R_16447945_16448305;chr3R_16447850_16448305 chr3R_16448221_16448305 chr3R_16448306_16449020;chr3R_16447843_16447849 85.71 77.78 85.71 87.88 80.00 85.71 86.96 87.10 80.85 80.95 76.47 89.29 76.19 86.67 95.24 88.00 75.00 80.00 95.24 87.50 78.95 78.26 76.67 81.82 92.86 78.95 88.00 77.78 90.91 89.47 89.47 100.00 90.48 77.14 76.47 80.00 82.61 84.62 80.00 89.29 100.00 80.56 94.12 70.37 88.89 68.75 58.82 90.48 96.77 100.00 82.61 94.12 76.92 87.50 78.57 81.82 90.00 90.00 K intron_retention Mmp1,E_chr2R_20560380_20562585,I_chr2R_20564123_20565214,I_chr2R_20569965_20572193 chr2R - chr2R_20560840_20562585 chr2R_20560839_20560840;chr2R_20562585_20562586 chr2R_20560775_20560839;chr2R_20562586_20562664 100.00 100.00 98.88 100.00 100.00 100.00 100.00 100.00 100.00 98.32 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.35 100.00 100.00 99.38 100.00 100.00 100.00 99.45 99.04 99.24 100.00 100.00 98.46 99.22 100.00 100.00 99.17 100.00 100.00 99.55 99.41 99.04 100.00 100.00 98.31 100.00 99.39 100.00 98.94 99.36 100.00 100.00 100.00 100.00 100.00 100.00 99.08 100.00 100.00 K alternative_acceptor CG10462 chr2L - chr2L_19733580_19733638 chr2L_19733591_19733638 chr2L_19733639_19734280;chr2L_19733396_19733579 95.00 95.45 95.65 95.83 100.00 87.50 94.64 92.98 95.38 100.00 80.95 97.73 93.55 96.77 100.00 94.44 96.43 95.83 96.88 94.59 93.75 95.83 93.10 83.87 95.83 95.45 95.00 100.00 100.00 92.86 93.75 91.67 94.74 92.00 95.65 86.36 83.33 100.00 95.65 90.91 97.14 87.93 100.00 100.00 92.31 86.67 95.24 84.62 97.78 90.00 91.89 96.15 100.00 94.12 92.11 100.00 86.84 84.21 K intron_retention CG10144 chr3L - chr3L_6485840_6485896 chr3L_6485839_6485840;chr3L_6485896_6485897 chr3L_6484327_6485839;chr3L_6485897_6486754 0.00 NA 0.00 0.00 0.00 NA 5.26 3.45 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 4.17 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 K intron_retention Aos1 chr3R - chr3R_8258795_8258850 chr3R_8258794_8258795;chr3R_8258850_8258851 chr3R_8258252_8258794;chr3R_8258851_8259279 0.00 0.00 1.89 2.25 0.00 3.12 0.00 0.00 0.85 0.00 0.00 0.81 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.51 0.00 0.00 0.71 0.00 1.41 0.00 0.00 3.28 0.00 0.00 1.23 0.00 0.00 2.02 0.00 1.54 0.00 0.00 0.00 2.61 1.43 0.76 0.00 0.00 0.00 0.00 0.00 2.13 0.00 1.80 1.71 0.00 0.00 1.61 0.00 0.85 0.00 0.00 K intron_retention Hexo2,CG1785 chrX + chrX_8603991_8604607 chrX_8603990_8603991;chrX_8604607_8604608 chrX_8603682_8603990;chrX_8604608_8604760 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.51 0.21 0.11 0.00 K jcn_only_AD CG6838,I_chr3L_22709306_22709668 chr3L - chr3L_22710181_22710325 chr3L_22710181_22710293 chr3L_22710071_22710180;chr3L_22710326_22710385 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 96.00 NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG7956 chr3R + chr3R_17352625_17352984 chr3R_17352625_17352877 chr3R_17351551_17352624;chr3R_17352985_17353123 82.76 78.95 75.00 96.15 73.33 80.00 91.84 96.55 88.33 55.56 90.91 85.19 91.67 86.96 84.00 92.31 91.30 69.57 84.00 93.33 84.21 67.57 78.57 80.56 93.33 90.48 82.76 92.86 52.38 54.55 77.78 92.31 44.44 88.10 85.00 50.00 71.43 73.33 71.43 66.67 52.38 82.98 93.33 77.78 63.16 71.43 63.64 34.48 87.18 82.61 83.78 78.95 50.00 92.86 95.00 88.89 85.19 40.00 K alternative_donor MB8.chr3R.pasa.66,CG1091,I_chr3R_2910490_2910662,RI_chr3R_2910490_2910686,RI_chr3R_2911041_2911135,RI_chr3R_2946518_2946663 chr3R - chr3R_2910490_2910662;chr3R_2910490_2910646 chr3R_2910490_2910686 chr3R_2910390_2910489;chr3R_2910687_2910762 4.17 4.00 3.70 7.69 13.04 3.57 9.38 6.98 6.38 0.00 4.00 0.00 4.35 5.56 3.85 2.70 4.35 4.17 3.33 6.33 4.55 6.25 0.00 5.26 0.00 0.00 6.82 0.00 3.85 3.03 12.50 4.17 6.82 2.86 0.00 4.76 5.00 3.70 6.82 14.00 5.00 1.85 5.56 2.94 3.12 3.85 3.23 2.94 6.98 14.29 7.50 17.39 4.76 3.70 0.00 3.45 2.63 4.65 K intron_retention CG7530,I_chr3R_10556352_10557136,eff chr3R - chr3R_10556352_10557126 chr3R_10556351_10556352;chr3R_10557126_10557127 chr3R_10556252_10556351;chr3R_10557127_10557231 46.89 37.93 42.11 51.72 38.89 50.00 60.00 40.98 39.47 47.83 39.29 36.84 50.00 46.88 38.64 54.55 51.43 69.44 38.46 56.32 41.94 NA 38.89 40.54 63.16 48.28 54.05 53.85 73.08 35.71 65.38 71.43 46.88 43.90 60.00 62.16 42.86 38.24 32.43 33.85 57.58 38.71 43.48 22.58 57.50 47.37 55.00 62.71 54.55 41.67 40.62 56.25 42.11 55.56 53.85 41.67 41.67 46.91 K intron_retention E2f,CG6353 chr3R - chr3R_17487942_17488440 chr3R_17487941_17487942;chr3R_17488440_17488441 chr3R_17486978_17487941;chr3R_17488441_17488464 8.33 0.00 4.76 25.00 12.00 0.00 15.52 8.77 4.84 0.00 4.55 10.17 25.00 3.45 3.03 13.95 4.55 6.25 3.23 8.89 9.68 10.20 9.21 5.00 13.73 9.52 8.93 21.82 13.73 0.00 10.00 0.00 6.82 4.26 2.56 11.43 3.85 0.00 3.92 5.63 17.50 4.41 8.33 2.78 11.54 11.48 9.52 21.43 12.96 15.00 8.20 0.00 6.90 4.84 9.76 10.64 7.00 8.51 K alternative_donor nes chr3L - chr3L_19253331_19253632;chr3L_19253331_19253636;chr3L_19253331_19253609;chr3L_19253331_19253676;chr3L_19253331_19253648;chr3L_19253331_19253764 chr3L_19253331_19253745 chr3L_19253215_19253330;chr3L_19253765_19253779 10.00 10.00 16.67 15.38 9.09 22.22 10.53 15.79 12.50 14.29 33.33 12.50 12.50 9.09 25.00 7.14 14.29 25.00 9.09 25.00 16.67 0.00 7.14 0.00 18.18 10.00 10.00 0.00 0.00 0.00 18.18 20.00 0.00 26.32 0.00 0.00 14.29 16.67 0.00 7.14 14.29 14.29 28.57 0.00 0.00 0.00 11.11 0.00 13.64 0.00 8.33 10.00 0.00 0.00 20.00 25.00 0.00 0.00 K multi_cassette CG8086,EF_chr2L_8244502_8244581 chr2L - chr2L_8246218_8247059 chr2L_8246218_8246418;chr2L_8246485_8246673;chr2L_8246767_8246860;chr2L_8246960_8247059 chr2L_8246419_8246484;chr2L_8246674_8246766;chr2L_8246861_8246959 chr2L_8246070_8246217;chr2L_8247060_8247381 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA K alternative_acceptor Plip chr3R + chr3R_19585018_19585082 chr3R_19585018_19585079 chr3R_19584949_19585017;chr3R_19585083_19585146 100.00 96.43 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 97.44 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 96.43 97.44 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 K intron_retention Mmp1,E_chr2R_20560380_20562585,I_chr2R_20564123_20565214,I_chr2R_20569965_20572193 chr2R - chr2R_20562665_20562732 chr2R_20562664_20562665;chr2R_20562732_20562733 chr2R_20562586_20562664;chr2R_20562733_20563648 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Tm1,I_chr3R_11126545_11128874,I_chr3R_11128245_11128874 chr3R + chr3R_11127409_11128874 chr3R_11127408_11127409;chr3R_11128874_11128875 chr3R_11127346_11127408;chr3R_11128875_11128944 1.72 1.94 2.33 2.96 0.00 3.39 5.93 3.54 5.24 0.00 1.35 0.00 4.35 2.70 3.57 3.32 0.00 1.03 3.01 3.17 5.63 0.81 2.84 0.00 1.49 1.72 2.42 0.00 0.00 1.85 4.38 1.15 0.72 2.70 1.71 1.06 0.00 0.00 1.19 1.82 0.00 2.86 4.65 2.59 0.00 1.41 2.24 1.94 1.59 1.92 3.50 0.96 0.00 0.00 3.31 0.00 1.09 0.00 K alternative_donor Sap47 chr3R + chr3R_11779957_11780304 chr3R_11779978_11780304 chr3R_11780305_11780405;chr3R_11779880_11779956 69.23 79.17 58.06 45.83 72.22 88.89 58.82 63.16 65.91 75.00 61.11 76.32 64.29 78.95 61.11 64.52 65.38 64.00 72.73 71.43 68.42 80.85 60.87 66.67 52.38 73.91 70.00 53.33 83.72 71.88 74.29 84.00 70.18 69.23 68.00 80.00 67.74 61.90 70.97 63.04 83.33 78.26 58.82 63.64 74.07 76.92 64.71 72.41 77.78 52.63 61.29 88.89 76.19 64.71 62.96 66.67 69.57 82.35 K alternative_acceptor CG9399,I_chr3R_5403032_5403329 chr3R - chr3R_5399229_5399863;chr3R_5399255_5399863 chr3R_5399318_5399863 chr3R_5399864_5399874;chr3R_5399076_5399228 80.77 70.00 84.62 93.33 84.62 69.23 75.00 85.00 84.38 NA 85.71 80.77 87.50 93.33 82.61 NA 80.00 81.82 88.24 82.76 NA NA NA 73.91 72.22 NA NA NA 75.00 NA 83.33 61.54 77.78 91.67 NA 71.43 82.35 NA 55.00 80.00 NA 65.91 81.25 NA 85.19 NA 75.00 68.42 90.62 72.73 73.68 68.75 76.92 NA 88.24 NA 84.62 66.67 K intron_retention mib2 chr2L + chr2L_19035866_19037803 chr2L_19035865_19035866;chr2L_19037803_19037804 chr2L_19035761_19035865;chr2L_19037804_19037971 1.82 0.00 5.33 6.58 0.00 0.00 6.85 2.82 0.00 0.00 4.35 1.61 0.00 0.00 0.00 3.12 0.00 22.03 6.25 1.47 4.17 3.81 1.89 2.02 3.57 0.00 6.25 3.23 2.70 1.64 2.53 5.88 8.86 0.99 0.00 2.44 4.49 2.56 1.94 0.00 0.00 1.72 3.92 0.00 3.33 1.41 0.00 3.70 1.68 1.92 0.00 0.00 1.82 0.00 0.00 1.69 0.00 6.67 K intron_retention CG7712 chr2R - chr2R_6785093_6785168 chr2R_6785092_6785093;chr2R_6785168_6785169 chr2R_6784977_6785092;chr2R_6785169_6785359 2.91 2.67 2.06 3.01 5.38 2.41 2.35 1.66 3.59 2.47 1.85 2.83 5.37 4.23 1.47 2.80 3.62 3.39 2.79 2.48 3.23 4.69 3.19 1.52 5.18 5.68 3.35 10.30 3.50 3.79 7.47 1.95 1.92 2.37 2.56 3.14 4.81 3.02 2.45 2.13 2.91 2.70 3.53 3.36 3.17 2.54 1.85 1.65 3.78 3.76 2.54 3.70 1.65 1.67 2.33 3.04 1.17 3.04 K intron_retention cora,I_chr2R_15125277_15130573,I_chr2R_15125940_15130208,I_chr2R_15129291_15129988 chr2R + chr2R_15129901_15129988 chr2R_15129900_15129901;chr2R_15129988_15129989 chr2R_15129679_15129900;chr2R_15129989_15130088 1.47 1.05 1.99 2.13 1.71 1.79 2.57 1.35 1.34 0.43 1.93 1.33 2.07 1.14 1.47 1.82 2.81 1.42 1.39 1.31 2.01 1.13 2.14 1.74 1.67 1.29 4.72 3.68 1.41 1.51 1.81 1.74 1.15 1.46 1.53 1.18 1.57 2.09 1.75 1.01 1.41 1.29 1.81 0.94 0.78 0.85 1.25 0.76 1.57 1.12 2.67 1.02 0.88 0.87 2.41 1.76 1.62 0.35 K intron_retention Sap47,I_chr3R_11761076_11761674,I_chr3R_11761436_11761674,F_chr3R_11761635_11761698,E_chr3R_11761635_11761703 chr3R + chr3R_11761307_11761561 chr3R_11761306_11761307;chr3R_11761561_11761562 chr3R_11761299_11761306;chr3R_11761562_11761634 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 94.44 100.00 100.00 100.00 96.43 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 K intron_retention CG31523,I_chr3R_294322_304799,RI_chr3R_298911_304354 chr3R - chr3R_293491_293565 chr3R_293490_293491;chr3R_293565_293566 chr3R_293354_293490;chr3R_293566_293728 0.00 0.76 0.00 0.26 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.99 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.28 0.99 0.00 0.75 0.93 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.63 0.76 0.37 0.00 0.00 0.00 0.22 0.00 0.00 0.56 0.00 0.00 0.00 0.24 0.56 0.26 0.00 0.00 0.00 0.00 0.95 0.00 0.00 N alternative_donor Tpi chr3R - chr3R_25959817_25960000;chr3R_25959817_25959972 chr3R_25959817_25959887 chr3R_25959232_25959816;chr3R_25960001_25960005 1.81 0.00 1.54 0.00 1.72 0.00 6.52 1.82 0.00 4.55 1.59 2.94 4.17 0.00 6.06 1.75 1.82 0.00 0.00 1.60 0.00 17.57 0.00 0.00 NA 1.79 6.67 15.91 38.46 3.85 2.94 5.88 18.00 4.48 6.67 4.35 0.00 0.00 0.00 8.33 22.22 0.81 0.00 7.14 6.94 8.06 0.00 8.51 3.26 0.00 0.00 0.00 3.45 0.00 2.53 0.00 0.00 9.26 K jcn_only_AD I_chr3R_1183570_1183645,CG16708 chr3R - chr3R_1187483_1193642 chr3R_1187483_1193578 chr3R_1185701_1187482;chr3R_1193643_1194012 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 1.35 0.00 0.00 1.72 1.52 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 1.69 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 1.47 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Lag1,I_chrX_6152540_6152929,RI_chrX_6153758_6161036,I_chrX_6160907_6161036 chrX - chrX_6152540_6152929 chrX_6152540_6152682;chrX_6152828_6152929 chrX_6152683_6152827 chrX_6152440_6152539;chrX_6152930_6153029 100.00 100.00 99.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.75 100.00 100.00 100.00 100.00 99.75 99.63 100.00 100.00 100.00 100.00 100.00 99.80 100.00 99.60 100.00 100.00 100.00 99.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.44 100.00 100.00 100.00 100.00 99.74 100.00 99.54 100.00 100.00 100.00 99.64 100.00 100.00 99.74 100.00 100.00 100.00 K intron_retention CG10418 chr3L + chr3L_12329818_12329878 chr3L_12329817_12329818;chr3L_12329878_12329879 chr3L_12329731_12329817;chr3L_12329879_12329946 0.00 0.00 0.00 0.00 1.56 0.00 3.03 0.88 0.00 7.69 5.36 1.90 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 14.29 9.52 NA NA 6.67 0.00 1.37 0.00 0.00 2.02 6.25 NA 0.00 NA 0.00 0.00 0.00 1.44 1.59 0.00 0.00 0.00 0.00 0.00 2.06 0.00 NA NA 0.00 0.00 0.00 NA 3.57 0.00 K intron_retention gpp,I_chr3R_2271795_2272181,CG33324 chr3R + chr3R_2270033_2271256 chr3R_2270032_2270033;chr3R_2271256_2271257 chr3R_2269544_2270032;chr3R_2271257_2271324 4.71 0.00 0.00 3.39 7.41 6.25 9.09 4.65 7.50 4.76 8.82 3.28 2.94 11.76 5.13 0.00 7.14 0.00 6.67 7.69 12.12 8.33 7.69 3.57 0.00 10.53 3.77 9.09 7.14 24.24 13.79 0.00 7.14 10.00 0.00 0.00 5.75 2.86 3.08 5.56 NA 0.00 15.00 3.23 0.00 5.56 3.70 13.04 10.53 4.08 9.52 4.00 0.00 0.00 0.00 4.00 3.33 0.00 K intron_retention SP2637,Gint3 chr2R - chr2R_14529078_14529139 chr2R_14529077_14529078;chr2R_14529139_14529140 chr2R_14528964_14529077;chr2R_14529140_14529301 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 1.47 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 1.82 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 1.67 1.37 1.61 K jcn_only_AA RpL29,I_chr2R_17184688_17191389 chr2R + chr2R_17181295_17181558 chr2R_17181295_17181354 chr2R_17181294_17181294 2.50 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 K intron_retention RpL10Ab,snoRNA:Psi18S-920 chr3L + chr3L_11815991_11816757 chr3L_11815990_11815991;chr3L_11816757_11816758 chr3L_11815955_11815990;chr3L_11816758_11817314 57.14 NA 50.00 9.76 NA NA NA 56.25 NA NA NA 60.00 NA NA NA NA NA NA NA 38.89 NA 8.77 NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA 46.67 NA 57.14 NA NA NA NA NA NA 66.67 87.50 NA NA NA NA NA NA 100.00 80.00 K jcn_only_AD CG12753,CG14894,RI_chr3R_12268071_12268135,RI_chr3R_12268071_12268141,RI_chr3R_12268071_12268661,Pak3 chr3R - chr3R_12268071_12268661;chr3R_12268071_12268145;chr3R_12268071_12268141;chr3R_12268071_12268135 chr3R_12268071_12268124 chr3R_12267971_12268070;chr3R_12268662_12268688 92.91 92.50 91.89 89.33 97.87 90.00 94.03 97.14 93.75 93.75 91.49 95.37 95.56 100.00 92.21 93.44 92.59 90.48 96.83 91.15 87.04 93.65 93.33 92.66 93.62 97.37 86.36 88.10 88.52 91.07 83.33 91.89 93.41 90.82 93.44 79.17 90.00 90.79 93.75 93.55 94.25 92.91 93.18 92.86 96.55 91.53 91.43 98.57 91.79 93.55 94.12 88.24 92.94 89.29 95.06 93.94 93.09 91.85 K jcn_only_AA CG17219,RFI_chr2L_3030576_3030666,GABPI chr2L + chr2L_3030576_3030669 chr2L_3030576_3030666 chr2L_3030562_3030575;chr2L_3030670_3030766 31.03 NA NA 20.00 NA NA NA 54.55 31.03 NA NA NA NA NA NA NA NA NA 27.27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 28.00 NA NA NA NA NA 48.00 NA NA NA NA NA NA NA NA NA 31.82 K alternative_donor Lmpt,RI_chr3L_16884531_16889334,I_chr3L_16904980_16905228 chr3L + chr3L_16858505_16859765;chr3L_16858527_16859765 chr3L_16858538_16859765 chr3L_16859766_16860046;chr3L_16858440_16858504 14.29 NA NA NA NA NA NA NA 16.67 NA NA 30.00 NA NA NA NA NA NA NA 14.29 NA 20.00 0.00 7.14 NA NA NA NA NA NA 0.00 NA NA 33.33 NA NA NA NA NA NA NA NA NA 33.33 NA 11.11 NA 9.09 28.57 NA 0.00 18.18 NA NA NA 0.00 NA NA N alternative_donor CG30438 chr2R + chr2R_1426935_1435132 chr2R_1435078_1435132 chr2R_1435133_1435429;chr2R_1426917_1426934 16.66 NA NA 0.00 NA NA 50.00 50.00 50.00 NA NA NA NA 0.00 0.00 33.33 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 50.00 0.00 NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG9339,I_chr2L_20877473_20877552,I_chr2L_20877678_20903015,I_chr2L_20882465_20889794,RE_chr2L_20903555_20916904,I_chr2L_20903560_20918638,I_chr2L_20922613_20922685 chr2L - chr2L_20877473_20877552 chr2L_20877478_20877552 chr2L_20877553_20877652;chr2L_20877411_20877472 98.97 100.00 98.95 98.11 97.69 98.70 100.00 99.43 97.98 100.00 100.00 98.80 95.71 98.06 99.16 100.00 99.04 98.90 100.00 100.00 98.18 100.00 97.78 100.00 98.39 98.90 98.26 98.18 99.32 99.07 99.29 100.00 98.17 98.89 98.72 98.97 99.03 98.21 99.20 98.34 96.67 98.97 98.75 98.40 100.00 100.00 100.00 99.65 100.00 100.00 98.95 97.06 96.15 100.00 98.60 98.33 100.00 99.24 K alternative_acceptor AnnIX,I_chr3R_16895383_16895999 chr3R + chr3R_16894742_16896445 chr3R_16894742_16895999 chr3R_16894560_16894741;chr3R_16896446_16896495 16.03 12.58 16.67 5.96 8.90 14.81 11.64 17.18 15.89 17.89 13.12 27.07 26.09 16.03 14.13 28.42 10.77 10.70 14.01 15.96 9.81 43.23 16.77 14.56 15.17 9.23 12.96 21.43 24.86 16.02 19.30 19.78 25.13 15.21 18.63 44.89 13.76 14.34 12.81 22.31 19.25 13.04 16.44 20.00 16.67 22.10 17.26 21.48 17.84 16.77 15.80 19.77 26.47 14.78 12.90 14.37 14.47 29.52 K intron_retention egr,I_chr2R_5970832_5970930,I_chr2R_5970999_5971058 chr2R + chr2R_5970999_5971078 chr2R_5970998_5970999;chr2R_5971078_5971079 chr2R_5970931_5970998;chr2R_5971079_5971158 0.00 0.00 0.66 0.49 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.60 0.00 0.00 0.76 0.00 0.00 0.90 0.00 0.69 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.82 0.54 0.00 0.00 1.24 0.00 0.52 0.46 0.00 0.00 0.00 N intron_retention CG1416,I_chr2L_21758100_21758179,I_chr2L_21758143_21758183,I_chr2L_21758143_21758209 chr2L + chr2L_21758143_21758205 chr2L_21758142_21758143;chr2L_21758205_21758206 chr2L_21758116_21758142;chr2L_21758206_21758279 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.80 95.35 92.31 100.00 97.34 100.00 94.64 94.95 95.53 100.00 93.13 100.00 96.69 100.00 100.00 100.00 95.57 100.00 100.00 100.00 100.00 100.00 100.00 95.88 100.00 100.00 95.48 100.00 100.00 100.00 100.00 93.46 91.33 100.00 96.26 100.00 100.00 100.00 100.00 94.48 100.00 95.80 100.00 100.00 94.62 100.00 100.00 95.81 100.00 96.23 97.14 K intron_retention CG8232 chr2R + chr2R_4820018_4820075 chr2R_4820017_4820018;chr2R_4820075_4820076 chr2R_4819796_4820017;chr2R_4820076_4820185 2.86 4.76 2.78 1.38 0.00 2.00 8.08 2.86 2.76 0.00 2.13 6.12 3.39 0.00 5.26 0.00 0.00 1.82 4.76 2.82 6.45 13.56 3.57 0.00 23.08 13.33 7.79 25.00 16.33 0.00 3.85 3.92 5.81 4.10 0.00 8.70 10.26 2.56 1.54 5.48 10.53 5.67 3.45 0.00 3.70 0.00 0.00 0.00 2.68 2.67 0.00 8.33 0.00 11.90 2.35 3.12 2.67 0.00 K intron_retention bur,I_chr2L_21177679_21177901,I_chr2L_21177679_21178250,I_chr2L_21177960_21179329 chr2L - chr2L_21177679_21179329 chr2L_21177678_21177679;chr2L_21179329_21179330 chr2L_21177579_21177678;chr2L_21179330_21179429 1.75 0.00 1.08 3.47 0.00 1.27 1.54 1.15 1.75 0.00 0.00 3.08 1.52 3.85 2.02 2.40 0.00 1.06 3.03 4.83 0.00 26.25 0.93 2.94 1.27 1.09 5.71 2.33 12.31 2.74 2.25 0.00 3.55 1.46 2.78 7.79 0.00 0.00 2.15 4.60 4.65 1.35 1.37 4.17 2.08 4.82 0.00 1.63 2.52 0.00 3.25 2.50 0.00 0.00 1.01 2.27 3.39 0.81 K jcn_only_AD CG7231 chr2L + chr2L_7985442_7985552;chr2L_7985494_7985552 chr2L_7985434_7985552 chr2L_7985553_7985768;chr2L_7985425_7985433 75.41 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA 70.83 NA K intron_retention CG14290,RI_chr3R_14754008_14754110 chr3R - chr3R_14753381_14753749 chr3R_14753380_14753381;chr3R_14753749_14753750 chr3R_14752669_14753380;chr3R_14753750_14753850 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention m-cup chr3R - chr3R_12972386_12972442 chr3R_12972385_12972386;chr3R_12972442_12972443 chr3R_12971842_12972385;chr3R_12972443_12973073 0.00 0.00 0.00 0.00 7.69 0.00 4.76 0.00 0.00 NA 7.69 0.00 NA NA 5.88 0.00 23.08 7.69 4.00 0.00 NA 5.26 0.00 5.88 NA NA 0.00 NA NA NA 22.22 NA NA 0.00 NA NA 12.50 NA 0.00 7.69 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 5.56 NA 0.00 NA NA NA 8.33 NA NA NA K alternative_donor CG17977,RI_chr2R_3954264_3954689,RI_chr2R_3954799_3955080 chr2R - chr2R_3954799_3954912;chr2R_3954799_3954935 chr2R_3954799_3954847 chr2R_3954775_3954798;chr2R_3954936_3954942 42.86 NA NA NA NA NA 33.33 50.00 37.50 NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA 60.00 NA K intron_retention CG8709,I_chr2R_4027128_4027182,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4029534_4029603 chr2R_4029533_4029534;chr2R_4029603_4029604 chr2R_4029434_4029533;chr2R_4029604_4029699 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 4.76 0.00 0.00 0.00 0.00 2.99 2.22 2.38 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 K alternative_donor arm,I_chrX_1790787_1794076,I_chrX_1793073_1793336,I_chrX_1793073_1793350,I_chrX_1793073_1793389,I_chrX_1793073_1793734,I_chrX_1793073_1794406,RI_chrX_1795648_1795745,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1793073_1793413;chrX_1793073_1793431 chrX_1793073_1793794 chrX_1793013_1793072;chrX_1793795_1793834 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.00 0.00 0.00 NA 0.00 0.00 8.33 0.00 20.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention trem chr3R - chr3R_15855554_15855612 chr3R_15855553_15855554;chr3R_15855612_15855613 chr3R_15855282_15855553;chr3R_15855613_15855723 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 5.26 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Aldh-III,RE_chr2R_3355332_3355720,I_chr2R_3356541_3356614,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3354816_3354978 chr2R_3354815_3354816;chr2R_3354978_3354979 chr2R_3354726_3354815;chr2R_3354979_3354987 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 NA NA 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K intron_retention mthl5 chr3R - chr3R_7710606_7710663 chr3R_7710605_7710606;chr3R_7710663_7710664 chr3R_7710105_7710605;chr3R_7710664_7710845 0.00 NA NA 0.00 NA NA 4.55 0.00 9.68 NA NA NA NA NA 14.29 0.00 NA NA 0.00 0.00 NA 0.00 3.70 0.00 NA NA 6.67 NA NA 0.00 NA NA NA 3.45 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA 3.85 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA K intron_retention CoRest chrX + chrX_19422857_19422926 chrX_19422856_19422857;chrX_19422926_19422927 chrX_19422668_19422856;chrX_19422927_19423634 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ate1 chr2R - chr2R_16143741_16143940 chr2R_16143740_16143741;chr2R_16143940_16143941 chr2R_16143684_16143740;chr2R_16143941_16144113 11.63 9.68 10.81 16.67 7.41 18.18 25.71 12.50 12.24 15.38 8.33 13.33 3.03 6.90 11.11 11.54 17.39 15.79 10.71 16.42 6.45 24.59 14.04 10.00 9.68 13.89 13.73 14.71 21.43 5.00 11.76 12.20 0.00 18.18 19.23 33.33 6.38 10.00 11.54 7.25 14.29 14.29 8.00 9.62 10.26 10.34 12.00 15.56 11.63 12.50 9.80 16.00 9.09 9.68 13.04 8.00 0.00 4.44 K intron_retention I_chrX_19573364_19573474,CG14227 chrX - chrX_19582659_19582726 chrX_19582658_19582659;chrX_19582726_19582727 chrX_19582616_19582658;chrX_19582727_19582995 100.00 NA 100.00 96.00 NA NA 100.00 95.83 95.45 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 91.67 100.00 96.15 100.00 100.00 100.00 92.31 90.91 100.00 93.75 100.00 100.00 100.00 100.00 93.75 100.00 94.44 100.00 100.00 100.00 NA 83.33 100.00 100.00 100.00 100.00 88.89 100.00 91.67 92.31 100.00 93.33 94.74 94.12 84.62 NA 100.00 92.31 NA 90.91 100.00 K intron_retention growl chr3R + chr3R_231142_231201 chr3R_231141_231142;chr3R_231201_231202 chr3R_230423_231141;chr3R_231202_231270 0.00 0.00 0.17 0.14 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.69 0.00 0.38 0.00 0.16 0.00 0.00 0.11 0.15 0.00 0.00 1.03 1.25 0.75 0.19 0.00 0.00 0.30 0.00 0.20 0.29 0.45 0.00 0.21 0.46 0.00 0.20 0.00 0.00 0.35 0.57 0.15 0.00 0.21 0.00 0.00 0.30 0.00 0.00 0.43 0.00 0.00 0.00 K intron_retention CG8188,I_chrX_17595810_17596592 chrX - chrX_17594911_17595002 chrX_17594910_17594911;chrX_17595002_17595003 chrX_17593833_17594910;chrX_17595003_17595198 98.43 98.55 98.75 100.00 98.44 98.39 96.95 95.88 97.75 98.44 96.67 99.32 97.06 98.63 98.96 99.27 98.51 95.18 98.11 99.13 100.00 97.30 98.99 100.00 98.36 99.03 98.75 98.04 98.36 95.00 99.27 99.17 99.28 98.24 98.70 100.00 90.59 98.15 98.81 97.71 98.41 97.58 94.59 98.53 98.43 98.10 99.07 98.77 98.27 98.61 97.70 94.44 100.00 98.88 97.30 97.65 96.39 98.38 K alternative_donor CG3631 chr3R + chr3R_10705805_10705885;chr3R_10705766_10705885 chr3R_10705801_10705885 chr3R_10705886_10706516;chr3R_10705554_10705765 30.77 NA NA NA NA NA 30.77 NA 30.77 NA NA 28.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA 30.00 NA 30.00 NA NA NA NA NA NA 33.33 NA NA NA NA NA 37.50 NA NA NA K alternative_last_exon mura,I_chr3R_5373093_5376618,RI_chr3R_5373093_5377292,CR42549,noncoding_15610,I_chr3R_5375533_5376618,RI_chr3R_5380786_5380850 chr3R - chr3R_5373093_5377037 chr3R_5375533_5377037 chr3R_5372520_5373092 chr3R_5373826_5375532 chr3R_5377038_5377079 66.67 54.55 50.00 40.00 66.67 40.00 83.33 40.00 20.00 22.22 50.00 50.00 75.00 66.67 57.14 75.00 83.33 75.00 83.33 70.37 50.00 46.15 66.67 46.15 50.00 75.00 60.00 57.14 18.18 72.73 100.00 80.00 80.00 87.50 80.00 60.00 22.22 66.67 50.00 75.00 85.71 73.33 66.67 50.00 90.00 55.56 42.86 61.54 66.67 66.67 33.33 83.33 66.67 66.67 66.67 62.50 90.00 83.33 K intron_retention bip2,RI_chr4_481674_487126,RI_chr4_483144_483680,RI_chr4_486609_487126 chr4 - chr4_480768_480828 chr4_480767_480768;chr4_480828_480829 chr4_480682_480767;chr4_480829_481146 10.36 10.53 4.55 25.00 16.67 12.77 13.51 14.29 10.00 NA 10.81 12.90 2.70 14.58 12.20 15.09 7.89 16.13 8.51 11.54 6.25 9.68 10.71 8.00 19.23 34.78 15.38 15.38 20.00 0.00 10.71 2.70 8.00 13.24 0.00 20.69 10.53 12.50 3.85 8.57 9.68 11.84 14.71 3.64 9.09 10.20 7.55 9.09 18.42 5.63 6.67 0.00 0.00 4.26 14.55 8.51 7.41 6.52 K intron_retention Caki,CEF_chr3R_17615483_17615583 chr3R - chr3R_17615310_17615383 chr3R_17615309_17615310;chr3R_17615383_17615384 chr3R_17615171_17615309;chr3R_17615384_17615482 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 8.33 1.82 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_120266_120510 chr2L_120265_120266;chr2L_120510_120511 chr2L_120225_120265;chr2L_120511_120512 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 96.97 100.00 100.00 100.00 K alternative_donor l(2)05714,RI_chr2L_4970785_4971075,CRE_chr2L_4970785_4971082,I_chr2L_4970785_4973718,RI_chr2L_4971343_4973718 chr2L - chr2L_4970785_4973718;chr2L_4970785_4971053 chr2L_4970785_4971086 chr2L_4970685_4970784;chr2L_4973719_4973787 87.50 100.00 80.00 83.33 75.00 60.00 100.00 83.33 87.50 100.00 75.00 87.50 80.00 100.00 100.00 100.00 66.67 60.00 100.00 84.62 100.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 80.00 83.33 100.00 62.50 90.00 83.33 100.00 66.67 100.00 80.00 83.33 75.00 85.71 87.50 100.00 80.00 77.78 85.71 100.00 85.71 85.71 87.50 83.33 100.00 100.00 100.00 75.00 83.33 88.89 92.86 K cassette CG41378,I_chr2RHet_1545717_1605870,I_chr2RHet_1545717_1621473,I_chr2RHet_1545717_1621569,I_chr2RHet_1606049_1607768,RI_chr2RHet_1606049_1621284 chr2RHet - chr2RHet_1545717_1621569;chr2RHet_1545717_1621473 chr2RHet_1545717_1605870;chr2RHet_1606049_1621473,chr2RHet_1606049_1621569 chr2RHet_1605871_1606048 chr2RHet_1545666_1545716;chr2RHet_1621570_1621573 86.67 93.75 85.71 28.57 85.71 82.93 83.12 87.78 82.41 94.12 94.44 92.47 92.50 84.09 88.64 72.86 80.00 96.43 84.44 92.77 93.75 93.75 86.00 83.64 80.56 86.67 60.66 50.00 87.04 90.00 97.78 86.00 82.05 85.33 96.67 76.67 87.50 90.91 90.00 84.85 82.50 86.52 79.07 95.92 89.29 91.46 90.74 92.00 84.69 84.78 90.57 87.88 89.47 94.12 90.20 85.71 82.05 84.54 K alternative_donor CG7530,I_chr3R_10551870_10552281,eff chr3R - chr3R_10551870_10552911 chr3R_10551870_10552281 chr3R_10551770_10551869;chr3R_10552912_10553011 2.22 0.85 1.63 3.85 1.19 2.22 3.88 4.97 2.75 0.00 6.06 1.23 2.56 1.87 2.46 2.99 3.19 6.52 3.16 3.92 8.00 4.76 1.52 1.92 2.27 1.45 3.12 2.44 4.55 1.47 3.64 1.72 1.59 3.82 3.51 2.04 0.78 1.16 0.97 1.04 1.96 2.11 2.38 0.79 1.41 1.75 1.72 1.38 3.95 1.47 2.56 1.47 1.15 3.45 2.59 2.44 2.27 1.45 K intron_retention Mef2,CREFI_chr2R_5809509_5845628,I_chr2R_5814375_5816404,RI_chr2R_5846889_5846948 chr2R - chr2R_5807253_5808023 chr2R_5807252_5807253;chr2R_5808023_5808024 chr2R_5806952_5807252;chr2R_5808024_5808227 0.00 0.00 2.78 2.70 0.00 0.00 0.00 1.23 0.00 0.00 7.14 1.87 13.33 2.22 0.00 0.00 0.00 14.29 1.96 0.00 4.65 3.33 0.00 0.00 0.00 6.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 2.22 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 K jcn_only_AA e(y)3,I_chrX_19526957_19527002 chrX - chrX_19526939_19527002 chrX_19526957_19527002 chrX_19527003_19527102;chrX_19526857_19526938 0.00 0.00 0.00 3.45 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 1.67 1.05 1.18 0.63 0.00 4.29 1.11 1.47 1.61 3.12 0.00 0.00 0.00 0.00 2.15 1.02 0.53 0.00 0.59 1.52 0.00 0.68 0.00 3.96 2.67 1.79 0.00 3.03 1.25 0.00 0.84 0.00 1.10 0.00 1.52 0.00 1.18 0.00 K intron_retention katanin-60 chr3R - chr3R_1056937_1057778 chr3R_1056936_1056937;chr3R_1057778_1057779 chr3R_1056715_1056936;chr3R_1057779_1057940 15.27 16.67 9.09 13.33 25.00 22.73 11.43 16.28 20.45 25.00 16.67 17.86 33.33 14.29 12.50 19.23 0.00 15.38 14.71 21.82 9.52 27.27 14.29 16.67 10.71 29.41 18.18 19.05 15.00 15.00 9.30 20.00 31.58 12.77 14.29 16.67 30.56 20.83 21.21 22.73 NA 10.42 10.71 13.33 10.00 15.15 10.81 16.00 13.21 9.09 17.65 7.41 10.53 8.33 18.92 8.70 16.67 13.04 K intron_retention CG32549,I_chrX_18286289_18286367,RI_chrX_18301919_18303082 chrX - chrX_18286515_18286581 chrX_18286514_18286515;chrX_18286581_18286582 chrX_18286368_18286514;chrX_18286582_18286795 0.00 0.00 0.70 0.00 0.00 0.90 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Atu chr3R + chr3R_1438146_1439149 chr3R_1438145_1438146;chr3R_1439149_1439150 chr3R_1437989_1438145;chr3R_1439150_1439211 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.08 100.00 100.00 100.00 98.68 100.00 100.00 100.00 100.00 100.00 98.46 100.00 98.44 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.81 K intron_retention CG14741 chr3R - chr3R_7898419_7898481 chr3R_7898418_7898419;chr3R_7898481_7898482 chr3R_7898266_7898418;chr3R_7898482_7898758 0.51 0.51 0.00 2.26 0.00 0.00 0.62 0.93 0.57 0.00 0.00 1.10 0.56 0.91 1.46 1.16 0.83 0.51 0.62 0.57 0.00 0.00 0.00 1.26 0.00 0.62 5.85 1.06 0.00 0.97 0.00 0.00 1.07 0.61 1.29 0.65 1.37 0.00 0.00 0.70 0.00 0.53 0.00 0.35 0.00 0.32 0.00 0.17 0.55 0.00 1.13 0.00 0.00 0.00 0.93 0.00 0.65 0.00 K intron_retention CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525393_1527189 chr3L_1525392_1525393;chr3L_1527189_1527190 chr3L_1525293_1525392;chr3L_1527190_1527240 80.47 76.19 94.44 89.47 78.57 80.95 87.10 78.57 86.84 NA 94.12 95.65 94.12 75.00 72.73 95.83 80.00 80.00 80.00 87.50 94.12 75.00 92.00 61.90 68.42 40.00 92.86 NA 60.00 78.57 83.33 NA 83.33 83.87 83.33 88.89 72.73 81.25 80.00 69.44 64.71 71.43 72.73 95.24 66.67 68.42 80.95 94.12 79.49 72.22 83.33 90.00 83.33 68.75 83.33 80.00 75.00 83.33 K alternative_acceptor I_chr3R_25875159_25875219,CG34317,CG7950,noncoding_20085,F_chr3R_25908044_25945850 chr3R + chr3R_25882757_25882861 chr3R_25882757_25882837 chr3R_25882665_25882756;chr3R_25882862_25882884 13.89 7.69 20.69 16.28 17.65 13.21 17.74 15.22 19.67 6.67 22.73 19.70 16.67 15.79 14.29 14.29 12.50 19.15 12.50 10.62 12.50 12.50 12.82 13.16 10.00 11.59 23.68 25.00 12.24 7.69 13.41 12.50 16.39 12.09 20.00 14.29 21.74 18.52 5.71 11.70 16.05 14.94 19.51 7.50 13.89 11.82 18.18 13.16 12.50 14.29 11.32 19.05 14.55 9.38 12.33 15.38 10.00 12.63 K intron_retention CG7192 chrX - chrX_17995240_17995303 chrX_17995239_17995240;chrX_17995303_17995304 chrX_17995126_17995239;chrX_17995304_17995344 100.00 100.00 95.83 100.00 96.15 100.00 100.00 100.00 98.08 100.00 100.00 97.44 100.00 94.12 96.67 95.45 95.45 100.00 94.12 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 K intron_retention prominin-like,I_chr3L_3121200_3123087 chr3L - chr3L_3127026_3127652 chr3L_3127025_3127026;chr3L_3127652_3127653 chr3L_3126867_3127025;chr3L_3127653_3127699 17.11 11.83 16.22 23.56 12.30 11.86 33.71 11.15 11.18 26.09 11.39 11.16 21.97 13.11 14.47 12.86 12.96 22.77 10.34 16.40 13.54 26.79 28.16 26.23 56.45 36.36 32.94 28.57 24.00 10.87 10.24 9.09 24.00 12.38 24.07 49.25 19.63 25.00 21.92 10.66 40.00 13.01 11.71 10.89 17.86 17.78 19.51 19.15 13.57 20.00 22.47 17.11 13.95 30.00 10.47 20.00 11.36 9.68 K intron_retention CG2051 chr3R - chr3R_1613350_1613466 chr3R_1613349_1613350;chr3R_1613466_1613467 chr3R_1613059_1613349;chr3R_1613467_1613839 99.09 99.01 98.75 99.33 100.00 98.84 99.19 98.10 99.40 100.00 100.00 98.61 98.51 100.00 100.00 99.20 98.55 98.75 99.01 98.99 98.72 100.00 100.00 99.07 98.55 100.00 99.09 98.21 97.67 97.56 100.00 99.14 99.15 99.38 96.05 100.00 96.05 100.00 98.95 99.27 98.46 98.89 98.82 100.00 98.29 100.00 99.13 96.09 98.43 99.15 99.15 100.00 98.61 100.00 99.18 99.21 98.50 98.81 K intron_retention CG14741 chr3R - chr3R_7896832_7896889 chr3R_7896831_7896832;chr3R_7896889_7896890 chr3R_7896608_7896831;chr3R_7896890_7897041 0.00 0.00 0.00 0.60 0.00 0.00 0.46 0.00 0.42 0.00 0.00 0.20 0.00 0.00 0.82 0.24 0.00 0.00 0.00 0.51 0.00 0.00 0.25 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.40 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.20 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3073150_3073277 chr3L_3073149_3073150;chr3L_3073277_3073278 chr3L_3073081_3073149;chr3L_3073278_3073478 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K alternative_donor CG40191,I_chr2RHet_391475_391828,I_chr2RHet_392279_392824 chr2RHet + chr2RHet_391004_391180;chr2RHet_390972_391180 chr2RHet_391127_391180 chr2RHet_391181_391278;chr2RHet_390957_390971 100.00 100.00 81.82 100.00 90.91 100.00 96.15 100.00 92.31 NA 100.00 96.15 92.86 100.00 84.62 95.45 100.00 87.50 100.00 95.00 100.00 100.00 90.00 100.00 100.00 86.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 88.89 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 81.82 100.00 K jcn_only_AA CG8116,I_chr3R_4542126_4542214,RI_chr3R_4542291_4542625,RI_chr3R_4542291_4542652,I_chr3R_4542561_4542617,I_chr3R_4545118_4545525 chr3R + chr3R_4542291_4542617;chr3R_4542291_4542622 chr3R_4542291_4542625 chr3R_4542215_4542290;chr3R_4542626_4542717 0.00 NA 0.00 5.88 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.33 0.00 1.64 0.00 0.00 0.00 0.00 NA NA 4.76 1.59 1.25 2.44 0.00 3.92 0.00 0.00 5.00 4.00 0.00 NA 7.69 3.30 0.00 2.22 NA 0.00 0.00 0.00 NA 2.22 0.00 0.00 6.06 NA 0.00 NA 0.00 NA NA 5.97 K intron_retention Rcd1 chr2R - chr2R_10037324_10037392 chr2R_10037323_10037324;chr2R_10037392_10037393 chr2R_10036739_10037323;chr2R_10037393_10037416 100.00 91.67 100.00 NA NA NA 91.67 93.33 100.00 100.00 90.00 97.56 100.00 100.00 100.00 100.00 NA NA 90.00 100.00 NA 90.91 90.91 90.91 100.00 100.00 91.67 90.91 93.75 100.00 100.00 100.00 92.31 92.31 100.00 100.00 92.31 NA 100.00 95.65 100.00 100.00 NA 90.91 100.00 100.00 NA 92.86 92.86 100.00 100.00 NA 100.00 80.00 90.91 100.00 88.89 100.00 K alternative_acceptor RI_chr3R_5165997_5180143,CG33936,I_chr3R_5167726_5180143,R_chr3R_5168211_5180143,RI_chr3R_5168214_5168297,RI_chr3R_5183458_5183705 chr3R + chr3R_5168214_5180143 chr3R_5168214_5168297 chr3R_5168114_5168213;chr3R_5180144_5180232 6.52 6.54 4.50 13.79 5.41 5.10 4.76 6.00 4.18 11.11 4.60 5.91 6.38 4.40 5.83 5.31 5.00 5.32 5.97 8.38 6.45 6.52 11.63 9.71 16.67 5.32 10.92 14.63 14.81 9.89 4.44 10.26 24.32 4.59 11.76 11.25 8.43 6.74 14.29 8.86 12.20 4.67 6.03 6.43 12.12 8.14 8.64 19.40 4.51 7.41 9.92 6.42 5.26 8.89 4.14 7.06 5.49 5.63 K jcn_only_AA exba,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1425890_1426009;chr3R_1425087_1426009 chr3R_1425813_1426009 chr3R_1426010_1426024 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA 0.00 NA NA 3.12 4.55 NA NA NA NA NA NA NA NA K jcn_only_AD CG3714,I_chr2L_4190825_4191774,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4195905_4196474 chr2L_4195905_4196470 chr2L_4195805_4195904;chr2L_4196475_4196570 0.39 1.11 0.00 1.32 0.00 1.23 0.77 0.74 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.83 0.00 0.00 1.80 0.00 0.00 0.59 0.00 0.00 0.75 1.08 1.23 0.00 2.18 0.62 3.23 1.00 0.39 2.53 0.00 0.00 2.38 1.90 0.87 0.46 1.20 0.54 0.00 0.51 0.00 0.54 0.00 0.66 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 K intron_retention pic chr3R + chr3R_8878192_8878344 chr3R_8878191_8878192;chr3R_8878344_8878345 chr3R_8877988_8878191;chr3R_8878345_8878756 0.00 0.00 0.00 1.57 0.00 0.00 2.60 1.27 0.97 0.00 0.00 0.00 2.50 1.47 0.00 1.56 0.00 0.00 0.00 1.10 0.00 2.25 1.64 0.00 2.06 0.00 0.81 2.22 3.48 0.94 3.12 0.00 1.23 0.00 0.00 0.00 1.37 1.89 0.00 1.45 0.00 0.55 0.00 1.98 0.00 0.00 0.00 1.39 0.66 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 K intron_retention I_chr3R_23771063_23772599,CG4951,RI_chr3R_23778808_23778861 chr3R - chr3R_23779064_23779219 chr3R_23779063_23779064;chr3R_23779219_23779220 chr3R_23778879_23779063;chr3R_23779220_23779668 1.04 0.00 1.23 3.19 0.00 0.00 2.63 3.70 3.45 0.00 0.00 2.26 0.00 3.85 1.35 0.00 0.00 1.28 3.57 0.55 0.00 3.08 2.40 0.00 2.38 0.00 0.00 7.27 3.45 0.00 2.53 1.72 2.50 1.61 0.00 3.08 1.75 0.00 2.94 0.85 0.00 2.92 0.00 2.35 2.78 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 3.41 0.00 1.04 0.00 4.21 K intron_retention I_chr3R_19825840_19825904,Miro chr3R - chr3R_19861049_19861335 chr3R_19861048_19861049;chr3R_19861335_19861336 chr3R_19861010_19861048;chr3R_19861336_19862540 5.26 15.00 0.00 5.88 11.76 0.00 11.54 17.14 13.16 NA 0.00 3.03 0.00 0.00 12.00 0.00 0.00 5.56 5.56 11.48 NA 0.00 12.90 0.00 NA 0.00 0.00 9.38 6.90 0.00 0.00 0.00 4.55 5.88 7.14 0.00 10.71 9.09 0.00 10.00 7.14 10.81 0.00 0.00 5.26 6.25 6.90 6.82 6.82 0.00 5.26 NA 0.00 0.00 10.53 7.14 5.00 2.13 K intron_retention ps,I_chr3R_5243723_5265067,I_chr3R_5243723_5270765,I_chr3R_5245770_5265067,I_chr3R_5245770_5269732,I_chr3R_5258562_5264836,I_chr3R_5262841_5265067,RI_chr3R_5262841_5266402,I_chr3R_5265428_5266402,I_chr3R_5265428_5269732,I_chr3R_5265428_5270765,CG16777,I_chr3R_5269733_5270765 chr3R + chr3R_5262841_5270765 chr3R_5262840_5262841;chr3R_5270765_5270766 chr3R_5262741_5262840;chr3R_5270766_5270860 22.22 NA NA 33.33 NA 26.67 27.78 23.53 18.52 NA 6.67 22.86 26.67 NA 20.00 18.75 NA 40.00 NA 14.81 NA NA 20.00 22.22 25.00 NA 30.77 91.67 NA 16.67 NA NA 7.41 26.32 NA 20.00 10.00 NA 0.00 7.41 NA 35.00 NA NA NA NA NA NA 16.67 NA 22.22 NA NA NA 22.22 NA NA NA K intron_retention hang,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16328172_16328293 chrX_16328171_16328172;chrX_16328293_16328294 chrX_16327198_16328171;chrX_16328294_16328891 0.00 0.00 0.00 1.72 0.00 2.13 6.02 0.00 1.35 7.69 0.00 1.83 0.00 3.12 0.00 0.00 1.82 0.00 1.32 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 0.00 2.02 0.00 1.92 0.00 4.26 0.00 0.00 NA 1.03 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention akirin,I_chr3L_7363211_7364831 chr3L + chr3L_7365173_7365262 chr3L_7365172_7365173;chr3L_7365262_7365263 chr3L_7364832_7365172;chr3L_7365263_7365619 0.00 0.00 0.00 0.76 0.00 0.00 0.00 1.36 0.27 0.00 0.00 0.00 0.00 0.00 0.96 0.42 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 1.08 0.40 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 K cassette CG13745,I_chr2R_4825500_4825553,I_chr2R_4825500_4825702 chr2R - chr2R_4825500_4825702 chr2R_4825500_4825557;chr2R_4825647_4825702 chr2R_4825558_4825646 chr2R_4825400_4825499;chr2R_4825703_4825802 100.00 85.71 100.00 100.00 88.89 85.71 93.33 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA NA 100.00 NA NA 88.89 100.00 100.00 93.33 NA 94.44 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA K cassette MTF-1,I_chr3L_9427147_9427217 chr3L + chr3L_9424434_9427495;chr3L_9423937_9427495 chr3L_9423937_9426998,chr3L_9424434_9426998;chr3L_9427147_9427495 chr3L_9426999_9427146 chr3L_9423442_9423936;chr3L_9427496_9427570 18.18 NA 18.18 30.77 20.00 NA 7.69 13.04 12.90 NA NA 10.53 NA NA 7.69 22.22 NA NA NA 23.08 20.00 13.64 10.53 NA NA NA 13.33 20.00 NA 15.00 41.67 NA 33.33 25.00 18.18 20.00 12.50 30.00 15.79 16.67 NA 25.00 NA 5.56 25.00 25.00 NA 30.00 16.67 30.00 5.88 NA 7.69 NA 15.38 20.00 NA 8.33 K jcn_only_AD RpS25,I_chr3R_7041333_7041414,I_chr3R_7041347_7041413,I_chr3R_7041347_7041556,RI_chr3R_7044164_7044221 chr3R - chr3R_7041347_7041556;chr3R_7041347_7041414 chr3R_7041347_7041471 chr3R_7041267_7041346;chr3R_7041557_7041598 0.00 0.01 0.01 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.01 0.00 0.01 0.01 0.00 0.02 0.00 0.00 0.01 0.02 0.00 0.00 0.01 0.02 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.01 K cassette Dg chr2R - chr2R_11973126_11975809;chr2R_11973126_11974435 chr2R_11973126_11973549;chr2R_11973799_11974435,chr2R_11973799_11975809 chr2R_11973550_11973798 chr2R_11973069_11973125;chr2R_11975810_11975870 0.62 0.56 0.53 0.31 0.00 0.54 0.55 0.00 0.57 0.53 0.00 0.95 0.00 0.69 0.45 1.14 0.79 0.79 0.62 0.73 0.70 0.44 1.19 1.08 1.11 0.00 1.08 1.49 0.00 0.44 0.53 1.01 0.24 0.42 1.03 1.06 1.57 1.24 0.59 0.79 0.61 0.30 0.80 1.30 0.53 0.53 1.19 0.62 0.74 0.90 1.26 1.10 0.78 1.35 0.48 1.02 0.00 0.00 N jcn_only_AA wech,I_chr2R_3373673_3377000,I_chr2R_3373673_3377045,I_chr2R_3373673_3377324,I_chr2R_3376705_3376837 chr2R - chr2R_3376324_3376837;chr2R_3376705_3376837 chr2R_3373673_3376837 chr2R_3376838_3376937 90.53 95.83 91.89 100.00 80.65 100.00 83.72 97.37 90.62 80.00 55.56 87.27 97.50 91.18 90.32 100.00 92.31 89.47 97.06 68.00 80.95 82.61 81.82 90.48 NA 92.31 NA NA NA 92.50 97.22 NA 86.00 80.49 82.61 NA 96.88 NA 90.48 74.58 NA 95.59 94.87 96.88 NA NA NA 80.00 97.40 NA 83.33 NA NA NA 90.57 NA NA 88.46 K alternative_acceptor MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17399683_17403392;chr2R_17399683_17401733;chr2R_17399683_17401713 chr2R_17399683_17403481 chr2R_17399598_17399682;chr2R_17403482_17403550 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CkIIbeta,I_chrX_11689220_11690898 chrX + chrX_11689220_11689633 chrX_11689219_11689220;chrX_11689633_11689634 chrX_11689138_11689219;chrX_11689634_11689761 5.56 3.51 3.85 8.33 8.93 10.87 17.86 8.04 8.53 NA 8.16 6.48 19.05 10.96 3.64 6.40 12.68 7.55 8.82 6.67 11.90 0.00 1.54 3.70 5.00 5.00 5.26 7.69 12.12 6.12 0.00 5.56 2.27 9.17 3.03 0.00 3.28 8.33 0.00 5.68 11.63 8.00 4.48 4.62 5.13 3.85 3.92 3.39 8.73 4.44 3.28 7.55 0.00 5.56 5.56 4.00 1.02 0.00 K intron_retention CG33981,fab1 chr2R - chr2R_13663380_13663438 chr2R_13663379_13663380;chr2R_13663438_13663439 chr2R_13663222_13663379;chr2R_13663439_13663601 0.00 0.00 0.00 9.09 3.57 3.85 3.95 3.03 2.94 0.00 0.00 5.63 4.17 0.00 0.00 2.74 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 3.45 0.00 3.45 0.00 3.23 0.00 1.34 0.00 3.12 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8399,E_chr2R_11909562_11911687,E_chr2R_11909562_11911694,E_chr2R_11909564_11911694 chr2R + chr2R_11911365_11911590 chr2R_11911364_11911365;chr2R_11911590_11911591 chr2R_11911262_11911364;chr2R_11911591_11911719 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG16721 chrX + chrX_5776497_5776559 chrX_5776496_5776497;chrX_5776559_5776560 chrX_5776330_5776496;chrX_5776560_5777110 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 2.00 3.12 3.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor wdb,I_chr3R_23394314_23406731,I_chr3R_23394314_23406794,I_chr3R_23394314_23407159,RI_chr3R_23394314_23407186,I_chr3R_23394314_23407412,I_chr3R_23394314_23407715,I_chr3R_23394314_23407721,RI_chr3R_23406048_23406731,RI_chr3R_23406048_23406794,I_chr3R_23406048_23406928,RI_chr3R_23406048_23407402 chr3R - chr3R_23406048_23406928;chr3R_23406048_23406865;chr3R_23406048_23407402 chr3R_23406048_23407723 chr3R_23405948_23406047;chr3R_23407724_23407815 60.00 66.67 62.07 75.68 69.23 50.00 46.67 59.46 51.16 58.33 26.92 64.44 12.50 62.50 65.52 56.00 71.43 4.76 43.75 56.67 34.62 55.56 66.67 58.06 66.67 57.89 58.82 41.67 41.86 50.00 65.22 63.16 26.92 50.00 62.96 58.97 78.57 75.00 60.00 62.50 53.85 60.00 52.94 75.00 63.64 52.17 75.00 42.22 62.79 60.87 68.29 35.29 66.67 80.00 60.71 68.42 61.54 56.25 K intron_retention CG1458,I_chr3R_25048492_25048616 chr3R - chr3R_25048492_25048964 chr3R_25048491_25048492;chr3R_25048964_25048965 chr3R_25048392_25048491;chr3R_25048965_25049121 0.00 0.00 0.00 0.00 0.00 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.88 0.98 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 N cassette gish chr3R + chr3R_12100892_12115352 chr3R_12100892_12107802;chr3R_12108131_12115352 chr3R_12107803_12108130 chr3R_12100886_12100891;chr3R_12115353_12115561 46.43 38.54 70.83 46.67 70.00 78.05 49.21 43.88 36.45 39.51 59.52 45.10 73.81 76.92 72.92 48.96 78.79 64.10 84.44 27.61 71.05 66.67 35.68 42.35 41.07 65.91 45.30 47.73 62.84 61.73 77.78 42.86 42.11 41.10 43.70 46.43 36.51 41.96 38.17 44.15 46.94 41.62 68.89 35.35 34.55 43.80 36.08 46.49 51.37 52.88 51.80 46.00 43.10 42.50 72.41 34.95 46.91 36.59 K jcn_only_AD CG3321,RI_chr3R_10154615_10155360 chr3R + chr3R_10152850_10152974;chr3R_10152906_10152974;chr3R_10152911_10152974 chr3R_10152811_10152974 chr3R_10152975_10153473;chr3R_10152803_10152810 0.00 0.52 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.43 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Indy chr3L - chr3L_18825085_18839135 chr3L_18825084_18825085;chr3L_18839135_18839136 chr3L_18825047_18825084;chr3L_18839136_18839343 0.00 9.09 15.79 15.38 NA 0.00 0.00 5.88 0.00 0.00 0.00 0.00 NA NA 10.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 14.29 7.14 0.00 4.76 4.17 0.00 0.00 0.00 7.14 2.27 10.53 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 2.70 0.00 3.45 0.00 0.00 10.71 0.00 0.00 10.53 NA NA 0.00 NA 0.00 0.00 K intron_retention CG14619,I_chrX_21869837_21869915 chrX + chrX_21869702_21869757 chrX_21869701_21869702;chrX_21869757_21869758 chrX_21869552_21869701;chrX_21869758_21869836 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 3.64 0.00 0.00 0.00 0.00 2.35 0.00 6.67 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG5746 chr3R - chr3R_20173013_20173126 chr3R_20173022_20173126 chr3R_20173127_20173316;chr3R_20172803_20173012 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 99.51 99.12 99.02 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.50 99.55 99.46 100.00 100.00 100.00 98.24 99.34 100.00 100.00 98.78 99.52 99.18 100.00 100.00 99.71 98.83 99.54 100.00 100.00 99.51 98.25 100.00 100.00 99.15 100.00 100.00 99.40 100.00 99.35 98.75 98.48 100.00 100.00 100.00 97.22 100.00 K jcn_only_AA CG42307 chr3L + chr3L_7324332_7324396 chr3L_7324332_7324391 chr3L_7323399_7324331;chr3L_7324397_7324436 90.32 NA NA NA NA NA NA 80.00 90.32 NA NA NA NA NA NA 96.00 NA NA NA 86.36 NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA 96.43 NA NA NA NA NA NA 91.30 NA NA NA NA NA NA NA NA NA K intron_retention Tango11,RI_chr2R_17605192_17606585,RI_chr2R_17605202_17605260 chr2R - chr2R_17605202_17606585 chr2R_17605201_17605202;chr2R_17606585_17606586 chr2R_17605102_17605201;chr2R_17606586_17606685 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 2.17 0.00 0.00 2.00 2.38 0.00 0.00 2.63 0.00 2.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 1.27 0.83 1.67 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 1.27 K jcn_only_AA csul chr2R + chr2R_12152628_12152686;chr2R_12152628_12152671 chr2R_12152628_12152704 chr2R_12152244_12152627;chr2R_12152705_12153131 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG1578,RI_chrX_11709573_11709680,I_chrX_11709573_11710263,RI_chrX_11709573_11710335,noncoding_23225,I_chrX_11710380_11710454 chrX - chrX_11709573_11709680;chrX_11709573_11710458;chrX_11709573_11710454;chrX_11709573_11710263 chrX_11709573_11710335 chrX_11709473_11709572;chrX_11710459_11710479 6.25 22.22 7.14 11.76 12.50 0.00 16.67 10.53 13.33 0.00 0.00 17.65 12.50 20.00 0.00 5.88 10.00 0.00 0.00 4.76 0.00 0.00 22.22 6.67 22.22 12.50 10.00 12.50 0.00 0.00 16.67 0.00 0.00 11.76 0.00 14.29 5.56 10.00 0.00 18.75 0.00 15.00 0.00 6.25 0.00 0.00 0.00 0.00 13.04 0.00 27.27 11.11 0.00 0.00 11.11 14.29 0.00 0.00 K jcn_only_AD Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2364640;chr2L_2361586_2364480;chr2L_2361586_2364836;chr2L_2361586_2365060;chr2L_2361586_2364594;chr2L_2361586_2364312;chr2L_2361586_2364889 chr2L_2361586_2364302 chr2L_2361486_2361585;chr2L_2365061_2365065 0.47 0.67 0.00 0.27 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.30 0.53 1.08 1.35 0.31 2.15 1.13 0.00 0.52 1.55 0.47 0.56 0.69 1.49 0.00 1.79 0.00 1.99 0.00 1.45 0.59 0.26 0.28 0.76 2.94 0.00 1.00 0.54 0.91 0.60 0.25 0.00 1.81 0.46 1.04 0.60 0.43 0.27 0.74 0.00 0.00 0.00 0.00 0.46 1.32 0.00 0.50 K jcn_only_AA eas,REI_chrX_16172581_16177702 chrX + chrX_16175307_16177702 chrX_16175307_16175471 chrX_16175011_16175306 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 2.90 3.03 0.00 1.69 0.00 0.00 2.06 0.99 0.00 0.00 0.00 0.00 1.27 2.15 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.74 0.00 0.00 1.30 4.26 0.00 0.00 1.20 1.47 0.00 1.05 K alternative_last_exon Mvl,E_chr3R_16880765_16881066 chr3R - chr3R_16879657_16881066;chr3R_16880764_16881066;chr3R_16877965_16881066 chr3R_16878968_16881066,chr3R_16879341_16881066 chr3R_16879584_16879656;chr3R_16880370_16880763;chr3R_16877097_16877964 chr3R_16878926_16878967 chr3R_16881067_16881137 4.88 4.00 7.02 6.59 5.13 2.13 4.00 16.19 3.33 2.13 5.71 4.60 1.79 6.00 3.57 10.13 7.14 9.09 10.53 8.65 4.88 6.76 6.56 3.85 2.94 5.26 3.23 0.00 0.00 3.70 6.67 1.69 7.46 5.75 9.09 5.88 3.39 7.32 4.92 7.87 3.12 6.80 2.63 2.86 7.14 2.56 3.39 3.80 4.90 7.02 3.23 2.78 4.44 2.33 6.56 3.85 4.00 6.31 K jcn_only_AD alt,I_chr3R_13503901_13504925,RI_chr3R_13503901_13505368,I_chr3R_13503901_13507824 chr3R - chr3R_13503901_13507816;chr3R_13503901_13508178;chr3R_13503901_13508123 chr3R_13503901_13508180 chr3R_13503801_13503900;chr3R_13508181_13508234 0.00 0.00 1.14 0.58 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 1.06 0.00 0.00 1.08 0.00 1.06 1.96 0.00 0.00 3.85 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 3.45 0.71 NA NA 0.00 0.00 0.00 5.13 NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 NA 1.06 NA 0.00 3.23 K intron_retention mnd chr3L + chr3L_14980950_14981011 chr3L_14980949_14980950;chr3L_14981011_14981012 chr3L_14980682_14980949;chr3L_14981012_14981349 100.00 100.00 100.00 100.00 94.74 96.43 94.00 100.00 100.00 100.00 100.00 98.21 97.14 100.00 100.00 100.00 96.30 100.00 100.00 98.36 100.00 91.67 97.37 100.00 94.12 96.67 100.00 NA 100.00 100.00 100.00 100.00 94.74 98.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 96.97 100.00 97.56 100.00 95.65 100.00 100.00 100.00 100.00 96.00 100.00 100.00 96.77 K jcn_only_AA RpS18,CG8908,EI_chr2R_16151918_16151997,I_chr2R_16151918_16152036,I_chr2R_16151938_16152065,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151938_16152065;chr2R_16151938_16151997;chr2R_16151938_16152006 chr2R_16151938_16152036 chr2R_16151852_16151937;chr2R_16152066_16152066 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.01 0.02 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.01 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.02 0.02 0.00 0.00 0.00 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 K intron_retention E_chr3R_7821802_7831079,Ect3 chr3R + chr3R_7827153_7827208 chr3R_7827152_7827153;chr3R_7827208_7827209 chr3R_7826931_7827152;chr3R_7827209_7827423 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 3.03 3.70 4.92 0.00 3.12 0.00 3.70 0.00 0.00 0.00 1.54 2.33 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 2.86 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Trc8 chr3R - chr3R_25326236_25326440 chr3R_25326235_25326236;chr3R_25326440_25326441 chr3R_25326223_25326235;chr3R_25326441_25326615 7.89 7.89 7.41 11.63 0.00 11.76 5.56 6.82 11.76 0.00 0.00 5.77 12.50 11.11 7.69 0.00 0.00 9.09 4.17 6.90 9.09 8.25 14.89 1.92 6.25 2.94 13.46 14.89 4.88 13.16 7.41 6.67 15.56 4.65 6.06 6.67 8.33 8.00 6.35 11.59 12.90 8.06 10.53 6.90 1.85 8.51 7.14 11.11 6.25 8.70 13.95 10.81 12.50 8.57 2.50 9.30 13.95 2.13 K intron_retention CG7530,I_chr3R_10556352_10557136,eff chr3R - chr3R_10556352_10557130 chr3R_10556351_10556352;chr3R_10557130_10557131 chr3R_10556252_10556351;chr3R_10557131_10557139 25.49 15.79 24.19 29.82 23.08 18.00 52.94 23.36 20.83 29.73 22.45 16.67 28.57 26.79 30.00 32.53 26.87 47.17 26.79 33.56 26.53 40.00 17.07 25.42 34.29 26.32 42.55 26.67 43.18 15.94 27.69 34.88 24.29 18.45 26.67 64.71 18.07 25.49 17.65 22.81 37.74 21.93 17.54 10.96 31.65 28.87 19.64 31.58 27.01 23.26 18.67 20.00 16.22 23.81 26.51 17.86 15.79 22.70 K alternative_donor RpL32,I_chr3R_25871509_25871807 chr3R - chr3R_25871509_25871851;chr3R_25871509_25871611;chr3R_25871509_25871583;chr3R_25871509_25871855 chr3R_25871509_25871771 chr3R_25871409_25871508;chr3R_25871856_25871862 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG4673,I_chr3R_21449128_21449210,I_chr3R_21452371_21452464,I_chr3R_21452407_21452453 chr3R - chr3R_21437172_21437302 chr3R_21437172_21437243 chr3R_21436770_21437171;chr3R_21437303_21437656 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG42360,RI_chr2R_20495045_20495115,RI_chr2R_20497443_20497538 chr2R + chr2R_20497443_20497538 chr2R_20497479_20497538 chr2R_20497539_20497638;chr2R_20497343_20497442 96.15 100.00 NA 93.62 95.24 90.91 95.92 96.15 95.16 NA NA 91.89 100.00 100.00 100.00 97.30 92.11 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA 100.00 NA 93.75 NA NA 94.44 NA NA NA NA NA 96.15 NA 96.15 95.24 NA NA NA NA NA 96.08 100.00 100.00 NA NA NA 96.97 NA 100.00 NA K alternative_last_exon Cam,I_chr2R_8161049_8161270 chr2R + chr2R_8147694_8152247 chr2R_8147694_8147780 chr2R_8152248_8152422 chr2R_8147781_8148319 chr2R_8147545_8147693 1.04 0.93 0.40 0.23 0.39 0.73 0.65 1.11 1.09 1.08 1.30 4.93 2.34 1.22 0.79 0.99 0.85 1.60 1.25 0.81 0.95 2.16 0.51 0.97 0.67 0.92 0.38 1.43 2.46 0.95 1.06 2.85 1.76 1.18 1.04 0.76 0.25 0.37 0.63 1.38 2.53 0.99 1.28 1.02 2.34 2.15 1.14 2.84 0.80 1.05 0.79 1.10 1.01 1.16 0.89 1.08 0.65 2.00 N jcn_only_AD Inos,I_chr2R_3344353_3345211 chr2R - chr2R_3344353_3346113;chr2R_3344353_3345211;chr2R_3344353_3346212 chr2R_3344353_3344799 chr2R_3344253_3344352;chr2R_3346213_3346215 0.06 0.00 0.08 0.05 0.10 0.00 0.14 0.00 0.03 0.00 0.00 0.07 0.00 0.00 0.07 0.19 0.00 0.10 0.00 0.03 0.00 0.37 0.11 0.12 0.31 0.07 0.14 0.06 0.05 0.07 0.37 0.14 0.00 0.24 0.00 0.00 0.10 0.00 0.15 0.07 0.00 0.06 0.00 0.11 0.00 0.04 0.15 0.00 0.05 0.06 0.08 0.19 0.00 0.00 0.15 0.12 0.05 0.00 K intron_retention MED1 chr3L - chr3L_21623009_21624032 chr3L_21623008_21623009;chr3L_21624032_21624033 chr3L_21621425_21623008;chr3L_21624033_21625939 85.65 72.22 86.67 84.62 77.78 80.00 90.91 100.00 84.21 66.67 NA 89.47 75.00 88.89 76.47 NA NA 77.78 87.50 95.83 70.00 84.21 92.31 94.44 82.35 63.64 92.86 96.15 97.37 96.00 53.33 97.44 83.33 65.00 90.00 95.65 81.25 53.57 96.00 89.36 95.56 69.57 87.50 80.95 93.33 92.16 86.96 86.96 80.00 92.00 63.16 87.50 77.78 66.67 81.25 66.67 82.35 89.61 K intron_retention CG6995 chr3R + chr3R_20646490_20646818 chr3R_20646489_20646490;chr3R_20646818_20646819 chr3R_20645451_20646489;chr3R_20646819_20646968 7.25 8.22 6.38 5.41 8.89 11.54 17.14 10.67 10.28 4.26 7.27 11.83 7.84 11.54 6.12 12.24 14.29 7.27 10.00 7.34 8.93 0.00 9.18 7.79 8.93 5.41 6.19 4.55 2.82 3.80 13.79 6.49 3.05 8.86 6.78 3.53 8.06 2.70 5.38 4.00 4.04 14.29 6.00 6.52 1.05 7.32 5.08 6.20 9.47 6.86 7.45 8.51 3.37 3.33 7.25 8.51 4.46 5.71 K intron_retention CG32663 chrX + chrX_11720122_11720188 chrX_11720121_11720122;chrX_11720188_11720189 chrX_11719191_11720121;chrX_11720189_11720495 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 2.33 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 3.33 0.00 NA NA 0.00 NA 0.00 NA K alternative_acceptor sd,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15717261_15717340 chrX_15717261_15717325 chrX_15717220_15717260;chrX_15717341_15717515 27.27 11.76 20.00 28.57 17.65 26.32 27.27 30.56 26.67 NA 36.84 25.53 17.65 20.00 26.09 33.33 23.81 33.33 19.23 21.43 28.57 50.00 37.50 18.75 54.55 29.41 46.15 14.29 NA 50.00 24.14 NA 50.00 19.51 42.86 27.78 NA NA 25.00 42.86 41.67 32.43 20.00 20.00 36.36 21.43 21.43 39.13 28.21 25.00 12.50 NA NA NA 29.63 NA NA 35.71 K intron_retention ald chr3R + chr3R_13498580_13498642 chr3R_13498579_13498580;chr3R_13498642_13498643 chr3R_13497575_13498579;chr3R_13498643_13499198 0.00 0.00 0.00 0.00 6.67 0.00 0.00 2.78 0.00 NA NA 7.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 3.23 0.00 0.00 0.00 14.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.90 6.45 0.00 0.00 0.00 0.00 7.41 0.00 8.11 0.00 3.03 0.00 0.00 3.57 9.09 0.00 0.00 0.00 K multi_cassette I_chr2L_822032_822857,dock chr2L + chr2L_826508_830737 chr2L_826508_829304;chr2L_829972_830144;chr2L_830350_830737 chr2L_829305_829971;chr2L_830145_830349 chr2L_826008_826507;chr2L_830738_830750 100.00 100.00 100.00 100.00 100.00 95.65 96.15 100.00 98.36 100.00 96.30 100.00 94.12 95.65 96.67 96.55 100.00 96.15 100.00 100.00 100.00 96.55 98.00 100.00 100.00 95.00 100.00 100.00 96.15 100.00 96.15 100.00 100.00 100.00 100.00 96.77 100.00 97.14 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 97.37 100.00 100.00 100.00 100.00 96.00 100.00 100.00 N alternative_acceptor CG8108,EI_chr3L_9859462_9859590,chr3L_9859594_9859878.0 chr3L + chr3L_9859462_9860377;chr3L_9859462_9859590 chr3L_9859462_9860413 chr3L_9859414_9859461;chr3L_9860414_9860844 80.33 85.42 75.81 61.33 80.33 81.36 59.74 69.66 79.78 78.26 82.26 81.68 70.00 76.67 84.09 55.00 76.67 87.06 71.88 73.45 82.26 78.38 82.14 84.21 80.56 75.93 76.04 75.44 80.65 77.61 38.76 81.58 85.14 72.53 81.43 65.00 86.96 86.87 91.08 75.27 83.87 78.36 79.31 71.21 88.24 80.52 81.72 77.55 76.52 81.43 81.89 77.78 89.29 90.12 77.78 88.24 88.89 84.29 K jcn_only_AD mle chr2R - chr2R_1867143_1867547 chr2R_1867143_1867205 chr2R_1866824_1867142;chr2R_1867548_1867556 53.13 61.90 39.13 54.17 60.87 NA 44.44 56.00 52.94 NA 48.15 34.38 NA NA 47.83 22.73 NA 29.17 NA 53.33 NA NA 59.09 64.52 47.83 NA 42.86 46.43 65.00 78.38 78.00 NA 33.33 52.17 57.14 55.56 66.67 NA 65.52 45.16 NA 35.71 NA 56.67 NA NA NA NA 44.83 NA 62.96 NA NA NA NA NA NA NA K alternative_donor aru,I_chr2L_862259_862314,I_chr2L_864795_867505 chr2L - chr2L_862259_862318 chr2L_862259_862314 chr2L_862159_862258;chr2L_862319_862414 2.05 1.23 2.45 6.25 0.00 1.29 0.67 1.87 1.26 0.00 1.45 2.28 1.46 0.89 1.27 2.29 2.78 1.24 1.56 2.09 1.69 2.46 3.63 1.60 2.10 4.85 4.17 6.21 6.09 2.45 1.57 3.16 1.13 2.15 1.90 1.36 3.63 2.26 3.25 2.59 2.99 2.01 3.67 2.68 1.74 1.51 1.56 2.15 2.05 2.19 1.64 1.83 3.06 2.74 1.14 0.52 2.22 1.89 K alternative_donor nonA,I_chrX_16265109_16265346 chrX + chrX_16259676_16265346 chrX_16265109_16265346 chrX_16265347_16265446;chrX_16259620_16259675 50.00 45.45 50.00 70.59 100.00 66.67 69.23 66.67 77.78 33.33 60.00 45.45 50.00 50.00 71.43 52.00 55.56 71.43 50.00 65.00 37.50 28.57 40.00 55.56 75.00 22.22 55.56 42.86 28.57 37.50 46.15 30.00 25.00 75.00 100.00 42.86 42.86 50.00 42.86 35.00 9.52 66.67 55.56 36.36 18.18 30.00 36.36 26.09 59.09 62.50 60.00 50.00 40.00 30.00 46.15 40.00 55.56 15.15 K intron_retention CG11456 chr3L + chr3L_20836029_20836080 chr3L_20836028_20836029;chr3L_20836080_20836081 chr3L_20835503_20836028;chr3L_20836081_20836458 29.16 NA NA 33.33 NA NA NA 33.33 NA NA NA 35.29 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA K cassette Nhe3,I_chr2L_6680525_6680670 chr2L - chr2L_6678757_6679985 chr2L_6678757_6678911;chr2L_6679263_6679985 chr2L_6678912_6679262 chr2L_6677873_6678756;chr2L_6679986_6680114 22.65 NA NA 30.00 NA NA 27.27 23.08 23.53 NA NA 28.57 NA 25.00 NA 20.00 NA NA 18.18 12.50 NA NA 12.50 NA NA NA NA NA NA NA NA 42.86 NA 20.00 NA NA 9.09 NA NA 30.00 NA 15.38 22.22 33.33 NA 30.00 15.38 NA 25.00 NA 22.22 NA NA NA 22.22 18.18 NA 33.33 N alternative_acceptor CG34394,I_chr2L_3365674_3365965,RI_chr2L_3365677_3365965 chr2L - chr2L_3365674_3367244;chr2L_3365677_3367244 chr2L_3365976_3367244 chr2L_3367245_3367719;chr2L_3365601_3365673 5.97 9.52 4.76 12.50 13.33 8.70 12.12 10.81 7.14 5.56 9.52 5.77 5.56 10.53 9.52 12.12 8.70 8.70 6.25 6.12 7.41 24.18 6.06 0.00 6.45 5.88 6.25 14.29 5.88 6.45 4.35 NA 4.35 6.67 6.90 0.00 4.08 0.00 5.88 3.70 NA 5.36 7.14 3.70 0.00 0.00 0.00 0.00 12.50 5.26 5.00 0.00 0.00 0.00 8.00 0.00 0.00 NA K jcn_only_AD Lnk,RI_chr3R_21714780_21715376 chr3R + chr3R_21714419_21715376;chr3R_21714614_21715376 chr3R_21714788_21715376 chr3R_21715377_21715476;chr3R_21714271_21714418 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG13531 chr2R - chr2R_18738540_18738591 chr2R_18738539_18738540;chr2R_18738591_18738592 chr2R_18737067_18738539;chr2R_18738592_18740064 23.08 29.41 NA 22.22 NA NA 36.36 14.29 31.58 NA NA 8.00 14.29 NA 26.32 36.36 NA 23.08 14.29 36.36 NA 14.29 41.67 NA 33.33 11.76 43.75 60.00 NA NA NA NA NA 26.09 NA NA NA NA NA 9.09 NA 16.00 NA NA NA NA NA NA 20.00 NA 23.08 NA NA NA NA NA NA 12.50 N alternative_donor CG2052,RI_chr4_407611_409383 chr4 - chr4_407611_411050 chr4_407611_407679 chr4_407533_407610;chr4_411051_411100 50.00 NA 100.00 NA NA NA 100.00 50.00 100.00 NA NA 0.00 NA NA 0.00 0.00 NA 100.00 NA 50.00 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 50.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA K cassette CG4662 chr3R + chr3R_15676853_15677741 chr3R_15676853_15677553;chr3R_15677641_15677741 chr3R_15677554_15677640 chr3R_15676787_15676852;chr3R_15677742_15678147 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG1746,I_chr3R_27043646_27044664,I_chr3R_27043667_27043890,I_chr3R_27043667_27044393,RI_chr3R_27044771_27045268 chr3R - chr3R_27043646_27044664 chr3R_27043667_27044664 chr3R_27044665_27044764;chr3R_27043567_27043645 99.93 100.00 100.00 99.76 99.90 100.00 99.87 99.88 99.92 100.00 99.90 99.93 100.00 99.89 99.96 100.00 100.00 100.00 99.95 99.95 99.85 100.00 100.00 100.00 99.91 100.00 99.93 94.40 99.90 99.92 99.92 99.82 99.93 100.00 99.89 99.36 100.00 99.92 99.95 99.89 99.52 99.91 99.87 100.00 100.00 100.00 99.91 99.89 99.95 99.91 99.96 99.90 99.85 100.00 99.87 99.96 99.93 99.96 K cassette gish,RI_chr3R_12118557_12122383 chr3R + chr3R_12118557_12122383 chr3R_12118557_12121393;chr3R_12121543_12122383 chr3R_12121394_12121542 chr3R_12118496_12118556;chr3R_12122384_12122483 82.14 82.14 77.42 63.04 90.00 77.78 70.00 61.22 81.36 92.86 85.71 94.12 68.97 77.27 90.48 66.67 73.91 63.16 78.79 85.48 91.67 67.86 90.91 84.62 80.00 88.89 82.76 76.47 80.00 95.45 78.12 84.62 89.47 77.78 80.95 92.00 88.24 92.31 70.00 88.89 77.78 84.00 81.82 87.88 80.00 88.00 95.00 84.62 76.79 68.97 75.00 90.48 85.71 75.00 82.61 64.71 83.33 86.96 K intron_retention CG30273 chr2R + chr2R_18555821_18556153 chr2R_18555820_18555821;chr2R_18556153_18556154 chr2R_18555095_18555820;chr2R_18556154_18556353 1.41 3.51 2.08 6.78 0.00 4.55 0.00 4.92 3.64 0.00 4.65 5.41 0.00 0.00 3.57 10.42 5.00 0.00 0.00 4.39 2.00 5.00 1.06 0.00 0.00 0.00 0.00 5.56 0.00 3.77 1.14 0.00 0.00 4.35 4.44 0.00 0.00 0.00 2.73 0.00 0.00 5.48 0.00 0.00 2.63 2.00 1.52 0.00 4.76 0.76 1.41 6.67 0.00 0.00 1.89 2.90 0.53 1.79 K intron_retention gro chr3R + chr3R_21867987_21868716 chr3R_21867986_21867987;chr3R_21868716_21868717 chr3R_21867660_21867986;chr3R_21868717_21869101 60.00 53.33 NA 61.11 NA NA 60.00 52.63 63.64 NA NA 62.50 60.00 38.46 46.15 60.00 NA NA 58.33 60.00 NA NA 87.50 80.00 NA 41.67 63.64 NA 63.64 NA 46.15 NA NA 50.00 NA NA NA NA NA 83.33 NA 47.06 NA NA NA NA NA 58.82 59.09 NA 80.00 NA NA NA 46.15 NA NA NA K intron_retention RhoGAP19D,EI_chrX_20347839_20348139,DMG4-MB6.chrX.37.001,RI_chrX_20380495_20381649 chrX - chrX_20358550_20359356 chrX_20358549_20358550;chrX_20359356_20359357 chrX_20358035_20358549;chrX_20359357_20359369 0.00 0.00 0.00 1.59 0.00 0.00 0.00 1.27 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6891,RI_chrX_18670889_18674713,I_chrX_18673576_18674713,RI_chrX_18674227_18674713 chrX + chrX_18673879_18674713 chrX_18673878_18673879;chrX_18674713_18674714 chrX_18673683_18673878;chrX_18674714_18674813 100.00 NA NA 93.33 NA NA 100.00 100.00 91.67 NA NA 100.00 NA 88.89 NA 100.00 NA NA NA 100.00 NA 95.24 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 88.89 NA 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA NA NA 100.00 100.00 NA K cassette RpS11,I_chr2R_8087545_8087698,I_chr2R_8087747_8088193 chr2R - chr2R_8087747_8088279 chr2R_8087747_8087932;chr2R_8088056_8088279 chr2R_8087933_8088055 chr2R_8087699_8087746;chr2R_8088280_8088293 2.13 3.70 1.53 0.67 1.84 1.69 4.64 0.50 1.89 2.94 1.03 1.81 2.17 1.57 0.67 2.53 0.99 2.70 1.13 2.42 1.80 3.68 8.93 12.16 11.76 0.98 9.52 5.13 3.42 2.23 2.67 0.72 0.78 1.03 3.70 1.68 5.10 8.14 5.68 2.51 1.08 0.90 1.63 2.13 0.69 1.62 3.49 0.75 1.90 7.69 7.27 4.41 2.02 9.80 0.83 6.78 2.62 0.42 K alternative_acceptor CG17218 chr2L + chr2L_12173131_12173213 chr2L_12173131_12173208 chr2L_12172984_12173130;chr2L_12173214_12174090 100.00 100.00 100.00 100.00 NA 88.89 100.00 100.00 100.00 100.00 NA 95.24 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 96.15 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 95.45 100.00 100.00 NA 100.00 94.74 100.00 95.24 100.00 100.00 100.00 100.00 100.00 93.75 100.00 K intron_retention CG2767,RI_chr3R_3832687_3833066 chr3R - chr3R_3832687_3833053 chr3R_3832686_3832687;chr3R_3833053_3833054 chr3R_3832587_3832686;chr3R_3833054_3833234 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pcaf,RI_chr3L_12519486_12519541 chr3L - chr3L_12514976_12515037 chr3L_12514975_12514976;chr3L_12515037_12515038 chr3L_12514139_12514975;chr3L_12515038_12515690 0.00 0.00 0.00 2.97 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 2.38 0.00 2.90 0.00 0.00 2.44 1.41 5.74 10.92 2.19 0.00 0.00 0.00 0.00 0.00 0.00 3.37 0.00 0.00 0.00 0.00 4.30 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.52 1.61 0.00 0.00 0.00 0.00 0.00 0.80 0.00 K jcn_only_AA Dystrophin,noncoding_17759,I_chr3R_15289404_15290179 chr3R + chr3R_15289404_15290221 chr3R_15289404_15290179 chr3R_15289382_15289403;chr3R_15290222_15290279 15.00 NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA NA 35.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG7630,RI_chr3L_17418607_17418678,noncoding_13185,I_chr3L_17418741_17418811 chr3L + chr3L_17418618_17419009 chr3L_17418618_17418678;chr3L_17418741_17419009 chr3L_17418679_17418740 chr3L_17418602_17418617;chr3L_17419010_17419135 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.82 100.00 100.00 100.00 99.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.80 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13411752_13411852 chr2R_13411788_13411852 chr2R_13411853_13412089;chr2R_13411589_13411751 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Zasp52,I_chr2R_11661472_11663280,I_chr2R_11690993_11701987 chr2R - chr2R_11662263_11664682 chr2R_11663013_11664682 chr2R_11664683_11664791;chr2R_11661933_11662262 98.11 97.09 100.00 95.65 100.00 95.74 98.51 96.61 99.06 94.12 96.00 100.00 100.00 94.74 100.00 100.00 100.00 88.00 100.00 96.67 100.00 76.39 97.24 98.73 99.00 96.55 95.69 94.81 97.70 98.71 97.62 100.00 98.70 97.59 100.00 100.00 98.11 98.00 97.65 97.88 97.30 99.19 96.55 98.36 97.14 98.52 100.00 97.30 100.00 94.32 98.48 100.00 100.00 98.81 95.00 96.91 100.00 97.30 K intron_retention Sdc,I_chr2R_17281296_17281705,I_chr2R_17286819_17367595,I_chr2R_17324594_17367595 chr2R - chr2R_17281296_17281369 chr2R_17281295_17281296;chr2R_17281369_17281370 chr2R_17281196_17281295;chr2R_17281370_17282240 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Klp3A,Bzd chrX - chrX_2493752_2493811 chrX_2493751_2493752;chrX_2493811_2493812 chrX_2493225_2493751;chrX_2493812_2494308 2.78 0.00 6.12 1.92 11.43 9.52 4.88 5.26 2.94 8.33 0.00 2.78 8.33 11.11 4.44 3.77 6.90 0.00 0.00 2.60 0.00 0.00 3.61 7.94 0.00 2.38 11.39 8.00 0.00 0.00 2.94 4.65 1.32 5.88 1.92 4.08 0.00 3.64 1.39 4.71 1.72 5.33 6.45 0.00 8.00 4.05 2.08 4.55 4.62 0.00 1.32 1.92 0.00 0.00 2.63 0.00 0.00 0.00 K intron_retention CG3961,I_chr3L_18872561_18872646 chr3L - chr3L_18883382_18883445 chr3L_18883381_18883382;chr3L_18883445_18883446 chr3L_18883290_18883381;chr3L_18883446_18883542 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA NA 92.31 100.00 100.00 100.00 NA NA NA 100.00 100.00 NA NA NA NA 100.00 90.00 93.33 90.91 100.00 100.00 100.00 NA NA NA NA 90.00 92.86 K intron_retention lap,I_chr3R_3017854_3019314 chr3R + chr3R_3018735_3019314 chr3R_3018734_3018735;chr3R_3019314_3019315 chr3R_3018696_3018734;chr3R_3019315_3019410 0.00 5.71 0.00 4.17 NA 0.00 10.71 9.09 9.23 NA 0.00 2.13 8.33 6.25 5.56 6.82 0.00 0.00 6.25 6.82 0.00 0.00 6.06 0.00 0.00 8.33 5.88 NA NA 0.00 3.57 0.00 5.26 3.51 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.05 0.00 0.00 0.00 0.00 4.35 4.35 0.00 0.00 0.00 0.00 0.00 7.50 0.00 0.00 0.00 K alternative_acceptor MB8.chr3R.pasa.66,CG1234,CG1227 chr3R - chr3R_3072539_3072596 chr3R_3072545_3072596 chr3R_3072597_3072717;chr3R_3070932_3072538 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 K intron_retention glu chr2L - chr2L_16734268_16734335 chr2L_16734267_16734268;chr2L_16734335_16734336 chr2L_16733617_16734267;chr2L_16734336_16736019 0.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 1.47 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Zyx102EF,I_chr4_1078380_1078835,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1078380_1078835 chr4_1078380_1078432;chr4_1078782_1078835 chr4_1078433_1078781 chr4_1078280_1078379;chr4_1078836_1078848 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.28 100.00 100.00 95.00 98.11 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 94.12 96.30 95.45 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 K jcn_only_AA Irc,I_chr3R_12830023_12830084 chr3R + chr3R_12830023_12830189 chr3R_12830023_12830084 chr3R_12829926_12830022;chr3R_12830190_12830523 0.20 0.00 0.27 0.00 0.00 0.32 0.55 0.00 0.24 0.00 0.00 0.00 0.46 0.25 0.00 0.00 0.20 0.00 0.36 0.28 0.75 0.00 0.29 0.00 0.49 0.00 0.00 0.00 1.16 0.00 1.11 0.00 0.00 0.34 0.45 0.00 0.80 0.45 0.78 1.09 0.35 0.12 0.25 0.25 0.00 0.00 0.77 0.00 0.13 1.06 0.30 0.76 0.00 0.59 0.00 0.00 0.73 0.00 K intron_retention dwg,RI_chrX_2622297_2622355,RI_chrX_2622297_2622430,RI_chrX_2622435_2622577,RI_chrX_2627170_2627263 chrX + chrX_2622297_2622355 chrX_2622296_2622297;chrX_2622355_2622356 chrX_2622197_2622296;chrX_2622356_2622434 47.06 NA NA NA NA NA NA NA 53.33 NA NA 50.00 NA NA NA 75.00 NA NA NA 62.50 NA 47.06 NA 33.33 NA NA NA NA NA NA 23.33 NA NA NA NA NA NA NA 58.33 41.67 NA 46.15 NA NA NA NA NA NA 46.15 NA 47.06 NA NA NA NA NA NA NA K cassette unc-104,I_chr2R_12643956_12644069,I_chr2R_12643956_12644305,RI_chr2R_12650846_12659758 chr2R - chr2R_12643956_12644305 chr2R_12643956_12644060;chr2R_12644251_12644305 chr2R_12644061_12644250 chr2R_12643856_12643955;chr2R_12644306_12644405 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG5789,I_chr3R_20367314_20369052,I_chr3R_20367337_20369421 chr3R - chr3R_20367314_20369421 chr3R_20367314_20369052 chr3R_20367237_20367313;chr3R_20369422_20369521 1.19 4.00 1.10 1.18 2.90 0.00 3.03 0.60 0.81 1.82 0.00 1.33 0.00 0.00 2.38 1.18 3.30 1.67 2.97 1.20 0.00 0.00 1.16 0.00 0.00 0.00 1.33 2.08 1.37 0.00 2.15 0.00 1.13 1.24 0.00 1.72 0.00 0.00 1.75 1.35 2.17 1.61 0.00 2.53 0.00 2.13 NA 0.00 1.29 0.00 0.00 0.00 8.33 NA 1.85 7.41 NA 3.03 K jcn_only_AD CG5630 chr3R + chr3R_16752700_16754401 chr3R_16753189_16754401 chr3R_16754402_16754407 10.77 NA NA 10.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG1832,I_chr2L_22167179_22167302,I_chr2L_22168644_22168740 chr2L - chr2L_22167239_22167302 chr2L_22167254_22167302 chr2L_22167303_22167402;chr2L_22167050_22167238 22.03 27.21 18.03 19.48 12.08 17.50 24.60 23.02 22.03 21.51 22.41 22.08 19.37 23.81 16.47 20.59 25.34 13.45 17.16 25.38 21.88 25.81 23.63 23.70 31.43 12.58 27.23 44.76 16.19 19.83 21.43 20.93 25.00 21.93 26.13 27.93 30.57 22.60 29.33 22.64 15.19 20.22 22.92 20.96 19.32 17.89 28.99 19.30 23.31 23.81 31.77 20.35 18.63 21.15 17.28 26.67 22.60 20.77 K intron_retention e(y)3 chrX - chrX_19523125_19523182 chrX_19523124_19523125;chrX_19523182_19523183 chrX_19522936_19523124;chrX_19523183_19523393 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 N intron_retention Clic chrX - chrX_13707761_13707907 chrX_13707760_13707761;chrX_13707907_13707908 chrX_13707363_13707760;chrX_13707908_13708018 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.10 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor Mes2,CEF_chr3L_22939285_22939369 chr3L + chr3L_22939041_22939369 chr3L_22939285_22939369 chr3L_22939370_22939469;chr3L_22938759_22939040 20.00 22.22 34.21 36.72 18.31 28.95 45.83 47.06 34.72 7.81 21.67 33.14 43.21 37.21 24.72 50.00 29.27 23.08 40.96 31.22 30.88 12.15 15.00 13.53 15.28 22.99 18.63 7.95 12.17 11.54 28.09 18.57 7.79 40.69 15.83 14.02 10.46 13.13 13.45 12.61 8.64 26.05 32.10 16.41 9.89 12.31 16.22 8.75 38.25 19.23 20.00 19.00 14.67 21.25 23.68 22.50 21.59 11.01 K alternative_acceptor RpL27A,E_chr2L_4457411_4457977,I_chr2L_4458058_4458120 chr2L - chr2L_4457275_4457374;chr2L_4457319_4457374 chr2L_4457290_4457374 chr2L_4457375_4457410;chr2L_4457188_4457274 99.44 99.57 99.37 99.31 99.49 99.34 98.78 99.49 99.45 98.81 98.86 99.35 99.25 99.78 99.71 99.36 99.74 99.48 99.44 99.28 99.17 99.50 99.62 99.52 98.89 98.50 99.57 94.72 86.21 99.25 99.34 98.82 99.62 99.37 99.44 97.34 99.45 99.63 99.63 99.47 97.98 99.51 99.56 99.52 99.64 99.12 99.80 98.96 99.37 99.22 99.68 99.47 99.55 99.60 99.39 99.76 99.55 99.19 K intron_retention CG7146 chr3R - chr3R_14097405_14097467 chr3R_14097404_14097405;chr3R_14097467_14097468 chr3R_14097071_14097404;chr3R_14097468_14097870 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.56 NA 0.00 0.00 3.57 0.00 7.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.12 0.00 0.00 K intron_retention Ptp69D,CG32112 chr3L + chr3L_12733140_12733208 chr3L_12733139_12733140;chr3L_12733208_12733209 chr3L_12733029_12733139;chr3L_12733209_12733388 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor hang,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16328892_16329177 chrX_16328906_16329177 chrX_16329178_16329187;chrX_16328792_16328891 99.03 98.33 100.00 98.46 98.21 98.31 100.00 100.00 99.33 98.53 98.15 98.13 98.59 100.00 98.48 100.00 100.00 100.00 98.67 98.77 96.77 98.59 100.00 98.61 100.00 98.33 95.06 100.00 99.28 100.00 100.00 98.44 99.26 100.00 98.21 97.40 99.02 98.44 99.21 98.47 98.44 100.00 100.00 99.05 100.00 98.95 100.00 99.03 100.00 95.74 97.50 97.30 100.00 100.00 100.00 98.08 100.00 100.00 K jcn_only_AD tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5960163;chr3R_5959310_5960101;chr3R_5959310_5960041;chr3R_5959310_5959789;chr3R_5959310_5960182;chr3R_5959310_5960026;chr3R_5959310_5960158;chr3R_5959310_5959679 chr3R_5959310_5960049 chr3R_5958937_5959309;chr3R_5960183_5960224 3.12 0.00 3.12 5.95 8.70 2.86 2.86 3.70 3.31 4.76 0.00 1.30 0.00 3.70 6.38 1.83 8.70 0.00 3.08 5.49 3.23 5.00 6.82 6.90 0.00 4.55 10.34 4.17 6.45 3.03 3.70 NA 0.00 1.05 3.03 3.03 NA NA NA 2.00 0.00 2.20 1.82 6.00 10.00 2.94 NA 3.85 3.23 0.00 0.00 8.70 NA NA 7.32 0.00 NA 2.78 K intron_retention sprt,CG30022 chr2R - chr2R_7274996_7275049 chr2R_7274995_7274996;chr2R_7275049_7275050 chr2R_7274982_7274995;chr2R_7275050_7275413 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.94 0.00 0.00 0.00 2.17 0.00 0.00 1.82 0.00 0.00 0.00 1.67 0.00 1.82 2.99 0.91 5.15 0.90 0.00 2.67 0.00 2.27 1.45 0.00 0.00 0.78 0.00 2.74 0.00 0.00 0.00 0.00 0.00 0.00 3.25 0.00 0.00 N cassette Nos,I_chr2L_10826086_10826539 chr2L - chr2L_10823110_10825673 chr2L_10823110_10823760;chr2L_10823853_10825673 chr2L_10823761_10823852 chr2L_10823027_10823109;chr2L_10825674_10825685 65.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 31.71 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG3714,I_chr2L_4190825_4191774,I_chr2L_4191897_4192115,I_chr2L_4191897_4192632,I_chr2L_4192178_4192632,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4190825_4191774 chr2L_4190824_4190825;chr2L_4191774_4191775 chr2L_4190725_4190824;chr2L_4191775_4191836 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA 5.88 NA NA 5.26 NA NA NA NA NA NA NA K alternative_donor CG13568,I_chr2R_19941242_19941302 chr2R - chr2R_19940843_19940901 chr2R_19940843_19940896 chr2R_19940721_19940842;chr2R_19940902_19940934 47.06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 47.06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG32581,I_chrX_15692783_15693086 chrX - chrX_15692305_15693086 chrX_15692783_15693086 chrX_15693087_15693155;chrX_15692244_15692304 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor scrib,I_chr3R_22362324_22363015,I_chr3R_22381374_22399575,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22362244_22363092;chr3R_22362120_22363092;chr3R_22362315_22363092;chr3R_22362254_22363092;chr3R_22362224_22363092;chr3R_22362142_22363092 chr3R_22362324_22363092 chr3R_22363093_22363115;chr3R_22362112_22362119 15.87 21.43 11.54 8.11 15.00 14.29 12.31 11.27 18.18 36.84 15.00 12.50 21.62 9.52 9.52 15.87 7.89 10.81 19.05 7.61 11.63 6.03 25.49 22.22 26.67 17.65 28.12 36.84 18.87 11.39 11.90 13.04 11.36 12.68 11.90 16.67 28.95 22.73 30.77 27.78 17.07 13.92 14.71 23.68 13.89 12.20 22.73 16.48 13.04 25.00 21.74 24.14 25.00 22.22 15.69 26.67 25.00 13.43 K cassette loqs chr2L + chr2L_13384023_13384983;chr2L_13384023_13384986 chr2L_13384023_13384656;chr2L_13384795_13384983,chr2L_13384795_13384986 chr2L_13384657_13384794 chr2L_13383737_13384022;chr2L_13384987_13385674 85.71 NA NA NA NA NA NA 75.00 80.00 NA NA 100.00 NA NA NA NA NA NA 83.33 88.89 NA 83.33 75.00 NA NA NA 100.00 NA NA NA 100.00 NA NA 71.43 NA NA 75.00 NA NA 87.50 71.43 90.00 NA 60.00 85.71 87.50 NA NA 85.71 NA NA NA NA NA 88.89 80.00 NA 85.71 K intron_retention Spc25,Cyp304a1 chr3R + chr3R_8787965_8788438 chr3R_8787964_8787965;chr3R_8788438_8788439 chr3R_8787748_8787964;chr3R_8788439_8788970 3.77 0.00 4.88 4.30 0.00 6.67 7.69 2.90 4.35 0.00 0.00 4.84 8.16 4.44 2.13 3.03 0.00 2.44 5.36 3.85 0.00 4.44 0.00 3.77 6.67 5.77 6.82 0.00 11.43 4.76 5.26 7.41 0.00 2.86 6.98 5.13 0.00 0.00 0.00 5.26 5.26 5.00 10.81 0.00 0.00 3.03 1.69 0.00 2.99 3.77 3.51 9.09 6.67 3.57 2.27 4.76 0.00 5.56 K alternative_acceptor G-oalpha47A chr2R + chr2R_6325612_6326879 chr2R_6325612_6326820 chr2R_6325496_6325611;chr2R_6326880_6326950 0.00 NA NA NA NA NA NA NA 0.00 NA NA 7.14 NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA K intron_retention atms chr3R + chr3R_601502_601559 chr3R_601501_601502;chr3R_601559_601560 chr3R_601207_601501;chr3R_601560_602526 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention AP-1sigma chr3R + chr3R_19784521_19784753 chr3R_19784520_19784521;chr3R_19784753_19784754 chr3R_19784387_19784520;chr3R_19784754_19784932 10.14 4.44 8.96 11.76 12.90 9.26 11.11 12.79 11.21 13.04 3.12 10.59 8.51 6.56 0.00 7.37 16.67 5.88 10.77 4.59 5.26 12.50 10.14 8.89 17.86 12.24 10.53 17.50 16.13 10.00 18.18 14.29 25.00 9.28 8.33 11.11 4.17 5.71 4.35 14.52 21.43 13.04 9.43 6.49 12.50 19.57 6.12 30.30 10.26 5.88 8.89 7.69 4.88 8.89 10.61 4.35 6.52 21.95 K intron_retention Ppt1,REI_chrX_8583323_8583467 chrX - chrX_8582936_8582994 chrX_8582935_8582936;chrX_8582994_8582995 chrX_8582660_8582935;chrX_8582995_8583121 0.00 0.00 0.00 5.26 0.00 5.41 1.85 0.00 3.12 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 0.00 10.00 0.00 9.52 8.33 18.52 NA 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.94 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 K jcn_only_AD CG10664,REI_chr2L_19958910_19959266 chr2L + chr2L_19958765_19959266 chr2L_19958769_19959266 chr2L_19959267_19959366;chr2L_19958700_19958764 14.91 9.46 19.05 18.57 13.51 14.29 18.97 12.09 13.44 8.47 11.18 15.44 12.22 16.90 15.25 18.45 16.00 18.39 20.62 14.96 18.75 17.50 10.87 12.09 12.12 18.03 3.57 4.55 26.09 15.38 16.23 13.54 29.49 13.01 4.76 NA 10.08 6.98 16.46 1.40 24.39 13.55 14.91 3.23 15.32 15.09 4.17 19.57 17.78 11.54 4.35 7.81 13.19 NA 16.08 16.28 5.94 20.51 K intron_retention CG16838,I_chr3L_16125390_16125510 chr3L + chr3L_16125390_16125485 chr3L_16125389_16125390;chr3L_16125485_16125486 chr3L_16125290_16125389;chr3L_16125486_16126338 92.86 100.00 94.44 100.00 NA 90.00 94.74 96.30 93.75 NA 90.00 95.00 91.67 80.00 90.00 92.86 100.00 81.82 93.75 90.91 NA 85.71 93.75 100.00 90.91 92.31 100.00 100.00 91.67 71.43 90.00 92.31 93.33 95.83 100.00 92.86 87.50 NA 100.00 95.65 94.74 82.61 100.00 72.73 90.91 94.44 NA 90.00 95.00 NA 86.67 100.00 NA NA 92.31 NA NA 77.78 K multi_cassette CG31619,I_chr2L_21725446_21728027 chr2L + chr2L_21725446_21728027 chr2L_21725446_21727005;chr2L_21727363_21727422;chr2L_21727574_21728027 chr2L_21727006_21727362;chr2L_21727423_21727573 chr2L_21725346_21725445;chr2L_21728028_21728127 93.14 95.31 89.01 90.57 94.87 98.67 92.00 93.27 95.31 85.94 100.00 92.39 82.35 95.83 97.06 91.18 95.00 95.00 90.91 88.02 100.00 97.22 94.26 94.74 94.81 89.02 93.33 90.62 84.78 90.99 92.97 94.03 88.79 90.60 91.14 89.86 93.68 95.20 93.14 95.35 92.11 94.26 90.00 95.60 89.57 94.33 94.62 85.71 92.02 91.25 96.55 90.32 95.10 95.65 94.12 91.30 92.36 87.88 K intron_retention CG7069,CG18596,I_chr3R_18203637_18203690,I_chr3R_18209085_18209133 chr3R + chr3R_18198736_18198787 chr3R_18198735_18198736;chr3R_18198787_18198788 chr3R_18198604_18198735;chr3R_18198788_18201144 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG6418,noncoding_11889 chr3L - chr3L_10870975_10871093 chr3L_10870974_10870975;chr3L_10871093_10871094 chr3L_10870685_10870974;chr3L_10871094_10871492 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention TepIV,EI_chr2L_19548696_19549582 chr2L + chr2L_19552414_19552472 chr2L_19552413_19552414;chr2L_19552472_19552473 chr2L_19551682_19552413;chr2L_19552473_19552899 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3558,RI_chr2L_2995071_2997790 chr2L + chr2L_2993378_2993544 chr2L_2993377_2993378;chr2L_2993544_2993545 chr2L_2993028_2993377;chr2L_2993545_2994408 7.35 10.87 13.21 9.64 11.11 9.52 4.95 8.11 7.50 3.45 9.52 8.14 5.77 10.53 14.00 7.37 6.52 5.26 7.81 8.91 8.33 16.90 6.52 5.00 0.00 7.41 23.08 9.09 18.57 5.71 4.08 9.80 5.81 5.45 0.00 9.52 6.25 12.50 5.88 5.05 6.35 11.34 2.78 10.94 5.13 5.06 0.00 4.62 7.69 6.90 7.32 3.12 8.00 NA 14.52 4.55 0.00 5.74 K intron_retention janA,RI_chr3R_25864678_25864966,I_chr3R_25864692_25864783,I_chr3R_25871509_25871807 chr3R - chr3R_25865129_25865198 chr3R_25865128_25865129;chr3R_25865198_25865199 chr3R_25864967_25865128;chr3R_25865199_25865238 25.71 23.08 19.51 35.82 13.16 22.22 37.50 18.46 21.59 31.25 28.21 20.59 13.04 18.18 16.67 20.29 25.71 24.24 27.27 26.44 32.26 59.09 38.64 29.63 32.26 28.30 43.48 60.71 52.78 36.36 21.31 15.38 27.27 21.15 33.33 44.00 24.44 16.28 14.93 30.30 48.00 25.00 20.00 18.75 18.18 35.48 15.56 40.00 24.56 22.73 34.29 37.50 26.47 36.36 22.22 33.33 15.74 18.92 K jcn_only_AA CG5646,I_chr3R_23386250_23386484,I_chr3R_23386287_23386484 chr3R - chr3R_23386220_23386484;chr3R_23386237_23386484;chr3R_23386287_23386484 chr3R_23386250_23386484 chr3R_23386485_23386584;chr3R_23386187_23386219 5.00 3.70 6.90 5.88 5.00 3.57 6.25 5.00 6.85 NA 0.00 5.00 NA 7.14 12.50 0.00 5.00 0.00 2.86 1.59 3.57 4.00 1.79 4.76 20.00 NA 3.51 8.00 5.26 6.25 4.48 12.00 0.00 2.17 6.98 3.85 2.99 3.45 12.20 6.38 0.00 1.75 0.00 7.02 6.90 3.92 2.70 8.33 9.30 9.09 4.35 10.00 9.52 14.71 16.67 14.71 7.69 NA K cassette I_chr3R_23749027_23749091,CG5508,E_chr3R_23755071_23758533 chr3R + chr3R_23751716_23755702 chr3R_23751716_23754952;chr3R_23755071_23755702 chr3R_23754953_23755070 chr3R_23751412_23751715;chr3R_23755703_23755867 95.65 100.00 93.75 94.44 100.00 95.45 95.00 100.00 97.96 95.00 88.89 94.44 87.50 100.00 95.00 95.65 95.65 100.00 95.24 100.00 93.75 96.67 94.12 95.83 100.00 100.00 94.12 100.00 100.00 100.00 91.30 100.00 88.89 96.88 100.00 85.71 87.50 100.00 95.83 95.65 NA 97.44 92.86 96.00 NA 92.31 96.77 91.67 95.35 100.00 100.00 92.86 93.75 88.89 94.74 100.00 93.75 73.33 K cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27707594_27801169 chr3R_27707594_27784756;chr3R_27784850_27801169 chr3R_27784757_27784849 chr3R_27707494_27707593;chr3R_27801170_27801219 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 93.33 100.00 100.00 100.00 NA 100.00 100.00 95.83 100.00 93.75 100.00 100.00 100.00 91.67 100.00 NA 85.71 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 95.83 100.00 92.86 NA 100.00 100.00 100.00 92.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 93.75 K intron_retention Spred,I_chr2R_10655876_10656041,I_chr2R_10655876_10656193,I_chr2R_10655876_10656868 chr2R - chr2R_10655876_10656782 chr2R_10655875_10655876;chr2R_10656782_10656783 chr2R_10655776_10655875;chr2R_10656783_10656795 9.09 5.56 7.41 22.22 0.00 8.70 15.00 10.20 7.55 7.14 5.88 15.38 15.38 3.70 2.70 8.33 0.00 0.00 11.54 3.85 0.00 38.46 3.12 12.50 NA 24.00 22.73 15.38 NA 17.39 15.15 NA 30.77 12.24 13.79 11.76 NA 14.29 NA 17.39 NA 7.14 0.00 5.71 NA 11.76 0.00 13.79 12.50 0.00 13.95 6.25 0.00 0.00 14.29 9.09 0.00 NA K intron_retention gish chr3R + chr3R_12122827_12122896 chr3R_12122826_12122827;chr3R_12122896_12122897 chr3R_12122558_12122826;chr3R_12122897_12123067 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG15099 chr2R - chr2R_14725482_14725537 chr2R_14725481_14725482;chr2R_14725537_14725538 chr2R_14725139_14725481;chr2R_14725538_14725733 1.55 1.52 0.00 0.00 0.00 0.00 1.42 1.29 1.89 10.53 0.93 0.54 2.88 0.00 0.00 3.50 3.97 4.83 1.34 4.23 3.68 0.56 1.42 1.65 1.32 0.00 0.00 0.00 0.00 0.95 3.14 4.88 1.03 2.27 3.45 0.00 2.61 2.06 1.64 3.23 6.59 1.53 3.39 6.52 6.36 1.55 2.40 1.98 1.66 4.43 1.09 0.00 0.00 2.16 0.00 2.36 1.36 4.04 K intron_retention CG14806,mRpL16 chrX + chrX_1774657_1774715 chrX_1774656_1774657;chrX_1774715_1774716 chrX_1774464_1774656;chrX_1774716_1774979 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.41 7.69 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.76 1.72 0.98 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 K intron_retention Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16045854 chr3L_16045250_16045251;chr3L_16045854_16045855 chr3L_16045216_16045250;chr3L_16045855_16045954 44.60 60.00 57.14 59.09 NA 69.23 31.58 57.69 50.00 NA 25.00 59.09 47.62 52.63 35.71 46.88 30.77 42.86 56.25 36.67 20.00 50.00 50.00 40.00 26.67 56.25 41.18 25.00 41.67 41.67 42.86 NA 39.13 46.88 53.85 42.11 41.67 45.45 47.06 26.32 NA 46.67 43.75 25.00 NA 38.46 NA 29.41 48.15 NA 47.62 NA NA NA 58.33 NA NA NA K jcn_only_AA msps,I_chr3R_11877071_11877796 chr3R + chr3R_11885098_11885185;chr3R_11885098_11885206 chr3R_11885098_11885182 chr3R_11884965_11885097;chr3R_11885207_11885406 60.00 71.43 NA 60.00 NA NA 65.62 46.15 40.91 76.19 NA 63.64 NA NA 57.14 57.14 NA NA NA 50.00 60.87 63.16 62.32 66.67 72.00 NA 48.39 NA 60.00 46.15 NA NA 55.00 38.46 73.08 71.88 58.46 63.41 64.00 56.41 NA 50.00 NA 64.44 36.36 70.00 46.15 50.00 48.39 63.41 69.64 67.74 45.45 51.43 76.19 57.14 50.00 NA K alternative_acceptor CG11284,I_chrX_8581798_8581850,Ogg1 chrX + chrX_8581988_8582075 chrX_8581988_8582069 chrX_8581919_8581987;chrX_8582076_8582138 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 99.01 100.00 100.00 100.00 100.00 100.00 98.33 98.25 100.00 100.00 100.00 99.08 100.00 98.00 99.02 100.00 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 100.00 100.00 98.04 100.00 100.00 100.00 98.73 100.00 100.00 100.00 100.00 98.57 98.25 100.00 100.00 100.00 100.00 100.00 100.00 98.41 100.00 98.61 100.00 100.00 98.55 100.00 K jcn_only_AD CG34408,I_chrX_10120689_10121004 chrX + chrX_10120689_10121435 chrX_10121023_10121435 chrX_10121436_10121990;chrX_10120589_10120688 0.00 0.00 0.00 9.38 0.00 0.00 2.50 0.00 0.00 NA 4.35 0.00 4.76 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 2.33 0.00 0.00 NA NA 3.45 NA 0.00 2.27 0.00 0.00 0.00 2.56 10.00 5.41 0.00 0.00 2.27 0.00 0.00 1.72 NA 0.00 3.12 4.26 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor plx,noncoding_14842 chr3R + chr3R_1511993_1512866;chr3R_1511993_1512762 chr3R_1511993_1512878 chr3R_1511864_1511992;chr3R_1512879_1513091 0.00 10.00 9.09 0.00 0.00 NA 0.00 0.00 0.00 NA 14.29 0.00 0.00 0.00 0.00 0.00 14.29 14.29 8.33 11.11 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 14.29 0.00 NA 10.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 4.76 0.00 0.00 0.00 NA NA 8.33 NA NA 0.00 K cassette CG14425,Sxl,CG14425_Sxl,CEFI_chrX_6981717_6984166,CEF_chrX_6984538_6992033 chrX - chrX_6981693_6985706 chrX_6981693_6982610;chrX_6982783_6985706 chrX_6982611_6982782 chrX_6981647_6981692;chrX_6985707_6985745 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_last_exon CG6782,CG6783 chr3R - chr3R_7386928_7390161 chr3R_7390094_7390161 chr3R_7386574_7386927 chr3R_7389695_7390093 chr3R_7390162_7390433 99.59 99.70 99.61 99.15 99.50 99.52 99.59 99.75 99.81 99.45 99.26 99.78 99.58 99.77 99.62 99.71 98.78 99.29 99.62 99.67 99.44 99.75 99.74 99.72 99.08 99.74 99.86 99.60 99.44 99.54 99.69 99.40 99.15 99.49 99.50 98.10 99.59 99.65 99.14 99.74 99.30 99.68 99.72 99.77 99.47 99.80 99.55 99.28 99.72 99.45 99.66 99.74 99.32 99.58 99.79 99.72 99.15 99.10 K jcn_only_AA ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13414489_13414718;chr2R_13413922_13414718;chr2R_13414486_13414718;chr2R_13413919_13414718 chr2R_13413823_13414718 chr2R_13414719_13414817 0.00 2.17 0.00 1.54 0.00 0.00 0.00 0.63 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 1.03 2.48 0.66 0.89 1.16 0.00 1.05 0.00 0.38 0.00 0.00 0.00 0.58 0.00 0.90 0.00 0.50 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor ena chr2R + chr2R_15047541_15047756;chr2R_15047541_15047681;chr2R_15047541_15047684 chr2R_15047541_15047753 chr2R_15047496_15047540;chr2R_15047757_15048407 4.65 4.27 7.77 4.00 6.42 6.00 3.19 6.02 5.36 4.55 5.45 2.37 6.06 2.44 5.22 3.41 5.05 8.47 0.00 5.35 7.96 1.42 3.73 3.60 3.61 2.38 2.83 4.65 5.48 5.59 5.15 3.08 4.32 5.78 3.66 3.41 5.93 2.00 5.49 3.90 1.89 5.42 3.80 4.13 4.12 1.25 5.06 6.90 7.00 3.70 6.19 6.90 7.46 4.84 3.52 3.57 4.76 5.66 K jcn_only_AA Klc,I_chr3L_12741783_12742943,I_chr3L_12741838_12743062 chr3L - chr3L_12739928_12739997 chr3L_12739931_12739997 chr3L_12739998_12740303;chr3L_12739716_12739927 98.75 98.04 100.00 97.52 97.37 97.18 98.56 97.80 99.10 100.00 100.00 96.02 99.08 98.25 97.75 99.07 100.00 97.10 99.11 100.00 98.15 100.00 97.14 97.75 100.00 98.77 97.89 98.15 97.53 100.00 98.63 97.09 100.00 99.46 100.00 100.00 97.30 100.00 100.00 98.23 98.28 99.38 100.00 98.77 98.99 98.64 96.15 99.40 98.92 96.26 97.39 98.75 100.00 100.00 97.14 98.11 97.92 98.80 K intron_retention bwa,I_chr2L_20069515_20073377,I_chr2L_20073310_20073377 chr2L + chr2L_20069515_20072353 chr2L_20069514_20069515;chr2L_20072353_20072354 chr2L_20069415_20069514;chr2L_20072354_20072646 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.65 0.00 0.00 2.15 0.00 0.00 0.00 0.00 2.53 0.00 0.00 2.08 0.00 4.55 0.00 0.00 1.82 0.00 0.00 0.00 0.91 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 K intron_retention CG8949,RI_chrX_16967645_16970957,I_chrX_16971501_16971713 chrX - chrX_16967645_16969985 chrX_16967644_16967645;chrX_16969985_16969986 chrX_16967545_16967644;chrX_16969986_16970020 0.00 NA NA 0.00 0.00 NA 13.04 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.94 NA 0.00 0.00 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 4.55 0.00 0.00 0.00 0.00 0.00 3.45 NA 0.00 0.00 NA NA NA NA 0.00 4.88 0.00 0.00 NA NA 5.56 0.00 0.00 NA 0.00 K jcn_only_AD CG9836,I_chr3R_4654041_4664113,I_chr3R_4749124_4756437 chr3R - chr3R_4648792_4648970;chr3R_4648792_4648982 chr3R_4648792_4648989 chr3R_4648564_4648791;chr3R_4648990_4649023 1.63 2.81 0.57 1.71 1.19 0.71 1.51 2.47 3.01 0.89 3.54 1.82 0.00 2.22 1.30 2.29 1.37 2.10 3.11 3.94 1.60 0.67 2.12 2.47 1.31 1.94 3.38 3.03 2.74 1.63 1.61 1.62 0.00 1.24 3.10 2.76 0.52 1.35 1.13 0.00 2.48 1.63 0.72 0.51 2.00 0.62 3.42 1.36 1.95 2.27 2.23 1.27 1.74 0.46 2.14 0.73 0.28 1.55 K mutually_exclusive CG7945,RI_chr3L_15515681_15516932,RI_chr3L_15516824_15516932 chr3L - chr3L_15515603_15516067,chr3L_15516565_15516932 chr3L_15515603_15515659,chr3L_15515681_15516932 chr3L_15516068_15516564 chr3L_15515660_15515680 chr3L_15515581_15515602;chr3L_15516933_15517032 50.00 45.45 50.00 63.64 60.00 66.67 27.27 71.43 66.67 10.00 60.00 75.00 75.00 50.00 40.00 44.44 33.33 25.00 42.86 57.14 33.33 62.50 50.00 57.14 66.67 58.82 55.56 50.00 50.00 60.00 42.86 42.86 37.50 75.00 14.29 57.14 50.00 10.00 50.00 66.67 50.00 75.00 40.00 70.00 25.00 30.77 40.00 28.57 70.00 50.00 42.86 45.45 50.00 25.00 50.00 50.00 25.00 27.27 K alternative_acceptor Rab35 chrX - chrX_20051870_20052002 chrX_20051894_20052002 chrX_20052003_20052302;chrX_20051145_20051869 0.00 0.00 0.00 1.80 0.00 0.00 0.00 0.52 0.00 0.00 0.00 1.17 1.19 0.00 1.43 0.00 0.00 0.85 0.00 0.83 0.00 0.54 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.66 0.00 0.00 0.66 0.00 0.71 0.00 0.00 0.00 0.00 0.70 0.00 0.94 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 K jcn_only_AD Pegarn chr3L + chr3L_12783425_12784534;chr3L_12783350_12784534 chr3L_12783483_12784534 chr3L_12784535_12784733;chr3L_12783320_12783349 23.63 NA NA NA NA NA NA NA 57.89 NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 27.27 NA NA NA NA NA 3.70 38.10 NA NA NA NA NA NA NA NA 17.86 K jcn_only_AA CG8889 chr2R - chr2R_7914657_7914727 chr2R_7914663_7914727 chr2R_7914728_7914987;chr2R_7914547_7914656 25.00 NA NA NA NA NA 15.00 NA 18.52 NA NA 26.92 NA NA NA NA NA NA NA 18.18 NA 27.27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 12.50 NA NA NA NA NA NA NA NA 25.00 NA NA 27.27 NA NA NA NA NA NA K jcn_only_AD CG4858,I_chr3L_20520381_20520577,EI_chr3L_20520642_20520692 chr3L + chr3L_20520377_20520692;chr3L_20520381_20520692 chr3L_20520642_20520692 chr3L_20520693_20520792;chr3L_20520281_20520376 3.70 2.83 1.85 5.83 3.33 2.86 4.55 7.63 4.65 4.48 3.30 6.86 4.35 4.88 0.00 2.59 2.82 5.63 3.30 0.50 4.23 10.98 2.78 4.05 3.96 3.92 4.71 3.62 2.49 2.46 0.88 2.70 2.17 2.97 2.38 8.05 6.67 11.01 9.14 6.40 1.08 6.63 2.13 2.44 3.74 3.70 4.29 1.13 2.96 9.92 5.88 9.09 0.00 5.43 3.30 6.59 2.88 2.24 K jcn_only_AA CG12702,I_chrX_19654440_19654520 chrX - chrX_19654440_19654520 chrX_19654463_19654520 chrX_19654521_19654620;chrX_19654340_19654439 100.00 94.29 100.00 97.30 94.29 96.43 100.00 97.87 96.67 NA 100.00 97.96 100.00 96.15 100.00 94.44 96.30 100.00 NA 100.00 100.00 100.00 97.67 100.00 92.31 97.30 100.00 100.00 96.43 100.00 94.59 NA NA 100.00 100.00 100.00 98.51 96.97 100.00 100.00 95.45 100.00 96.55 NA 96.30 100.00 100.00 100.00 100.00 97.14 96.30 96.88 NA 100.00 97.14 100.00 100.00 NA K intron_retention Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5006553_5008598 chr2R_5006552_5006553;chr2R_5008598_5008599 chr2R_5006405_5006552;chr2R_5008599_5008637 97.14 96.55 92.59 100.00 100.00 95.24 95.65 100.00 98.04 90.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 95.65 100.00 97.50 96.15 100.00 95.35 96.30 100.00 100.00 96.55 90.00 89.47 100.00 100.00 90.48 97.14 97.56 90.00 96.67 97.56 88.46 93.10 97.22 100.00 100.00 100.00 100.00 88.00 97.06 95.45 96.67 100.00 93.75 96.67 94.12 95.24 100.00 100.00 88.89 86.96 100.00 K alternative_acceptor CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20825513_20825667 chr2L_20825513_20825658 chr2L_20825471_20825512;chr2L_20825668_20825758 78.31 71.01 77.33 87.10 70.97 84.06 70.45 81.82 69.44 82.35 64.52 85.33 86.36 81.54 84.00 81.10 50.00 76.92 82.46 86.44 75.86 88.75 85.85 74.49 95.12 89.33 81.05 74.70 81.01 60.32 88.31 79.03 60.27 72.15 78.31 89.53 76.56 76.67 79.17 65.44 77.78 78.69 69.05 72.22 78.57 68.07 75.56 73.03 84.13 74.14 85.42 72.58 83.33 81.82 81.25 68.42 65.93 72.29 K alternative_donor alt,I_chr3R_13503901_13504925,RI_chr3R_13503901_13505368,I_chr3R_13503901_13507824 chr3R - chr3R_13503901_13507816;chr3R_13503901_13508178;chr3R_13503901_13508123 chr3R_13503901_13508180 chr3R_13503801_13503900;chr3R_13508181_13508234 0.00 0.00 3.03 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 2.56 0.00 1.39 2.86 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 1.89 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.70 0.00 0.00 8.33 K jcn_only_AA CG13384 chr2L + chr2L_8386386_8386474;chr2L_8386386_8386483 chr2L_8386386_8386486 chr2L_8386217_8386385;chr2L_8386487_8387378 26.24 26.07 25.32 26.43 24.59 25.19 27.02 26.40 23.74 24.87 27.14 25.84 26.06 28.00 28.85 26.14 30.45 26.30 27.98 25.94 25.40 26.52 27.37 26.96 26.81 23.36 28.78 30.40 25.62 27.17 23.33 26.60 25.67 25.02 27.51 28.11 24.97 24.11 25.37 29.96 23.11 26.24 25.29 26.90 26.90 25.87 26.93 26.00 26.62 27.66 24.50 26.08 27.96 26.88 26.09 25.44 28.89 24.52 K intron_retention CG2478,I_chr2L_20653491_20653552 chr2L - chr2L_20651834_20651893 chr2L_20651833_20651834;chr2L_20651893_20651894 chr2L_20651626_20651833;chr2L_20651894_20652085 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 4.88 1.41 8.89 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention cnn,I_chr2R_9333096_9336723,I_chr2R_9333096_9336812,CG30062,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9333096_9337678 chr2R_9333095_9333096;chr2R_9337678_9337679 chr2R_9333052_9333095;chr2R_9337679_9337937 8.00 14.29 0.00 0.00 NA NA 12.50 8.00 8.70 NA 12.50 15.38 0.00 NA 17.65 NA NA NA NA 9.09 NA 0.00 8.00 5.00 0.00 9.52 9.68 5.56 3.85 0.00 NA NA 12.50 0.00 NA NA 0.00 0.00 7.41 15.38 14.29 10.71 NA NA NA NA NA NA 12.50 6.67 9.09 NA NA NA NA NA NA NA K jcn_only_AA CG8468 chr2R + chr2R_10107548_10108112;chr2R_10107548_10114915 chr2R_10107548_10108091 chr2R_10107405_10107547 3.86 2.86 4.89 6.32 2.94 3.77 5.00 3.12 3.24 6.78 4.00 3.77 0.82 3.37 3.75 4.55 4.49 3.68 3.09 3.38 4.96 5.39 3.70 3.92 6.58 6.43 2.48 3.85 5.11 3.98 3.86 3.76 6.29 4.48 5.11 8.20 5.74 3.60 1.56 3.00 7.79 1.56 4.76 4.70 2.91 4.38 1.20 4.84 3.68 2.33 2.73 5.00 4.14 3.06 4.43 5.42 1.85 3.60 K intron_retention RpL35A,I_chr3R_1292099_1292701,I_chr3R_1292104_1292512,I_chr3R_1292125_1292701 chr3R - chr3R_1292104_1292701 chr3R_1292103_1292104;chr3R_1292701_1292702 chr3R_1292047_1292103;chr3R_1292702_1292730 0.36 0.34 0.20 0.17 0.26 0.15 0.42 0.31 0.27 0.36 0.21 0.31 0.58 0.20 0.19 0.38 0.18 0.23 0.34 0.21 0.18 0.41 0.56 0.14 0.43 0.30 0.78 2.29 0.70 0.80 0.16 0.66 0.44 0.28 0.52 0.86 0.21 0.22 0.28 0.64 0.41 0.24 0.17 0.73 0.54 0.79 0.50 1.14 0.30 0.57 0.59 0.36 0.21 0.49 0.24 0.45 0.45 0.89 K intron_retention mmd chrX - chrX_15843028_15843552 chrX_15843027_15843028;chrX_15843552_15843553 chrX_15842400_15843027;chrX_15843553_15843849 14.81 NA NA 33.33 14.29 12.50 26.67 13.04 13.33 NA NA 41.67 25.00 0.00 11.76 NA NA NA 40.00 24.32 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 12.50 NA NA 14.81 NA NA NA NA NA NA 23.08 NA 17.39 NA NA NA 25.00 NA 0.00 NA K jcn_only_AA Gel,I_chr3R_63540_64006,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_63540_63897;chr3R_63540_64006 chr3R_63540_64024 chr3R_63440_63539;chr3R_64025_64099 99.42 99.84 99.50 100.00 99.03 99.79 98.60 99.59 99.77 100.00 100.00 99.81 98.92 99.82 99.87 99.10 99.61 99.65 99.51 99.51 99.81 99.42 99.18 99.13 97.06 96.77 99.29 99.31 100.00 99.33 98.74 99.39 99.20 99.55 98.87 97.92 99.21 100.00 99.78 99.36 97.86 99.72 99.34 99.36 99.32 98.71 98.66 99.51 99.56 99.14 99.35 98.44 99.75 99.20 99.60 99.45 99.57 99.62 K alternative_donor CG18624,RI_chrX_7787450_7787620,RI_chrX_7787450_7787687,RI_chrX_7787524_7787687 chrX - chrX_7787524_7787782 chrX_7787524_7787620 chrX_7787424_7787523;chrX_7787783_7787787 18.65 12.68 5.62 18.92 6.57 4.38 18.92 11.62 8.55 28.57 5.49 8.77 10.42 9.62 5.52 15.06 6.48 5.36 8.61 5.52 7.63 47.62 20.00 30.30 20.00 14.04 63.16 NA 69.23 35.71 10.47 27.78 32.35 8.13 41.18 50.00 36.84 16.67 21.74 18.37 30.30 6.06 7.69 47.37 11.11 39.39 33.33 32.43 8.29 42.11 28.00 19.05 14.63 45.45 4.85 37.04 22.95 26.67 K intron_retention CkIIbeta,I_chrX_11689220_11690898 chrX + chrX_11689220_11694025 chrX_11689219_11689220;chrX_11694025_11694026 chrX_11689138_11689219;chrX_11694026_11694516 46.88 NA NA 28.00 NA NA 50.00 41.67 73.68 NA NA NA 43.75 NA NA 69.23 NA NA NA 35.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 64.29 NA NA NA NA NA NA NA 43.75 NA NA NA NA NA NA 53.33 NA NA NA NA NA NA NA NA NA K cassette CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1662935_1663826 chr2R_1662935_1663234;chr2R_1663362_1663826 chr2R_1663235_1663361 chr2R_1662765_1662934;chr2R_1663827_1664096 80.00 75.00 76.19 65.75 78.12 84.21 65.00 65.52 78.49 81.25 96.97 69.62 95.56 82.93 76.60 70.59 74.42 80.85 77.36 78.48 96.88 48.65 80.00 91.11 89.47 72.22 80.56 71.43 66.67 72.00 71.43 69.57 62.96 81.25 82.76 68.18 87.50 89.66 74.29 80.00 94.74 76.83 70.73 91.43 95.00 85.71 86.49 76.92 81.72 92.11 79.59 91.67 92.00 83.33 84.75 91.67 84.75 95.83 K alternative_donor mbc,I_chr3R_19615584_19615649,I_chr3R_19625220_19625288 chr3R + chr3R_19608111_19615649 chr3R_19615584_19615649 chr3R_19615650_19615749;chr3R_19607533_19608110 2.33 3.45 1.96 2.60 2.50 2.38 1.30 1.14 2.15 3.23 2.13 2.33 1.82 2.00 2.44 2.60 2.00 2.86 1.89 3.19 0.00 4.17 1.67 2.78 2.44 2.33 2.56 18.18 7.69 2.94 2.13 0.00 3.12 1.39 3.85 2.56 2.00 3.85 2.13 1.54 5.56 2.22 2.86 5.00 10.00 3.85 0.00 1.67 2.25 0.00 1.92 3.33 0.00 0.00 1.54 0.00 0.00 3.85 K intron_retention I_chr3L_15996923_15996998,mib1 chr3L - chr3L_16003263_16004379 chr3L_16003262_16003263;chr3L_16004379_16004380 chr3L_16002030_16003262;chr3L_16004380_16004896 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon CG42389,chr2L_16571337_16571974.0,I_chr2L_16622842_16634725 chr2L + chr2L_16559945_16652742 chr2L_16559945_16597210 chr2L_16652743_16652912 chr2L_16597211_16597641 chr2L_16559938_16559944 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention betaCop chrX - chrX_18276003_18276072 chrX_18276002_18276003;chrX_18276072_18276073 chrX_18275897_18276002;chrX_18276073_18276346 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.48 0.00 0.00 0.61 2.01 1.15 0.50 0.00 0.51 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.35 0.00 0.25 0.00 0.00 0.82 0.87 0.25 0.00 0.83 0.36 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 K intron_retention CG8312 chr3R + chr3R_5433697_5447240 chr3R_5433696_5433697;chr3R_5447240_5447241 chr3R_5433636_5433696;chr3R_5447241_5448139 0.00 NA NA NA NA NA NA 0.00 9.38 NA NA 4.35 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG40191,I_chr2RHet_391475_391828,I_chr2RHet_392279_392824 chr2RHet + chr2RHet_391004_391180;chr2RHet_390972_391180 chr2RHet_391127_391180 chr2RHet_391181_391278;chr2RHet_390957_390971 99.18 100.00 94.44 100.00 98.08 98.08 97.71 99.18 97.37 NA 98.00 98.56 97.01 98.41 94.92 98.23 100.00 97.67 98.70 99.04 100.00 100.00 96.43 100.00 100.00 95.83 100.00 100.00 100.00 100.00 98.61 100.00 96.55 100.00 97.83 100.00 100.00 100.00 100.00 100.00 98.41 99.25 98.00 100.00 100.00 97.50 100.00 96.00 99.18 97.73 100.00 100.00 100.00 100.00 98.36 98.00 94.34 100.00 K jcn_only_AD CG31431 chr3R + chr3R_17696656_17697703;chr3R_17696730_17697703;chr3R_17696581_17697703 chr3R_17696702_17697703 chr3R_17697704_17697862;chr3R_17696406_17696580 0.79 0.68 1.08 0.74 0.00 1.34 1.12 0.28 0.75 1.82 2.50 0.35 1.44 1.57 2.53 0.00 0.78 0.53 0.53 0.50 0.81 0.00 0.74 0.00 0.91 0.81 3.23 0.00 1.79 0.00 1.41 2.74 0.79 1.55 0.00 0.00 0.83 0.00 0.00 1.71 2.04 1.10 1.74 0.00 0.00 2.80 0.96 0.93 0.62 3.00 0.60 0.00 1.85 0.00 0.00 0.00 0.95 1.22 K alternative_donor CG1572,RI_chrX_11450380_11450442,I_chrX_11450380_11452520 chrX - chrX_11450380_11452571;chrX_11450380_11452565 chrX_11450380_11450442 chrX_11450280_11450379;chrX_11452572_11452620 0.27 0.22 0.22 0.42 0.11 0.29 0.28 0.42 0.23 0.31 0.25 0.24 0.23 0.32 0.22 0.38 0.20 0.36 0.27 0.37 0.23 0.58 0.30 0.19 0.39 0.27 0.63 1.23 0.44 0.20 0.21 0.15 0.36 0.35 0.33 0.40 0.15 0.12 0.12 0.44 0.20 0.32 0.24 0.18 0.19 0.31 0.26 0.31 0.37 0.24 0.41 0.13 0.16 0.36 0.29 0.24 0.14 0.19 K intron_retention KCNQ,I_chr2R_6034329_6034563,I_chr2R_6039928_6040408 chr2R - chr2R_6034500_6034563 chr2R_6034499_6034500;chr2R_6034563_6034564 chr2R_6034396_6034499;chr2R_6034564_6034663 28.57 NA NA NA NA NA NA NA NA NA NA 28.57 NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 18.75 NA NA NA NA NA NA NA NA NA K cassette Cp110,I_chrX_21890195_21895316,I_chrX_21900456_21904601 chrX + chrX_21887472_21888893 chrX_21887472_21887792;chrX_21887921_21888893 chrX_21887793_21887920 chrX_21887238_21887471;chrX_21888894_21889294 100.00 100.00 NA NA NA NA 62.50 85.71 100.00 NA NA 100.00 NA NA 83.33 NA NA NA 100.00 88.89 NA NA 100.00 88.89 NA NA 100.00 NA NA 100.00 100.00 100.00 NA 87.50 100.00 NA 100.00 100.00 100.00 100.00 NA 90.00 NA NA NA 100.00 100.00 NA 88.89 90.91 90.91 NA 83.33 90.91 83.33 100.00 100.00 87.50 K cassette CLIP-190,I_chr2L_17385896_17394432,RI_chr2L_17386394_17394432,I_chr2L_17394493_17404060,I_chr2L_17401291_17404060,I_chr2L_17401582_17402303 chr2L + chr2L_17385896_17400395;chr2L_17389531_17400395 chr2L_17385896_17394432,chr2L_17389531_17394432;chr2L_17394493_17400395 chr2L_17394433_17394492 chr2L_17385796_17385895;chr2L_17400396_17400464 94.12 90.00 100.00 100.00 100.00 100.00 100.00 94.12 96.77 NA 85.71 95.24 92.31 92.86 100.00 95.45 100.00 88.89 90.91 96.43 88.89 85.71 94.74 93.33 87.50 92.86 92.86 NA 64.71 100.00 90.91 100.00 90.91 95.45 100.00 88.89 92.86 100.00 87.50 84.00 100.00 96.00 100.00 86.67 85.71 NA NA 93.75 95.83 87.50 100.00 100.00 NA 100.00 100.00 88.89 NA 90.00 K intron_retention CG12582 chr3R + chr3R_28520_29503 chr3R_28519_28520;chr3R_29503_29504 chr3R_28098_28519;chr3R_29504_29884 0.00 0.00 0.00 1.45 0.00 0.00 0.67 0.53 0.71 0.00 1.31 1.25 0.00 0.00 0.00 0.42 0.55 0.61 0.00 0.00 0.00 0.61 0.35 0.00 0.78 0.00 0.00 0.00 1.15 0.00 0.00 0.00 1.35 0.65 0.00 0.00 0.49 0.00 0.00 0.00 1.32 1.27 0.00 0.00 0.00 0.00 0.87 0.87 1.45 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 K jcn_only_AA CG5455,I_chr3R_22287369_22288750 chr3R + chr3R_22292793_22292859;chr3R_22292793_22292853 chr3R_22292793_22292855 chr3R_22292336_22292792;chr3R_22292860_22293068 0.00 0.00 0.00 2.44 NA 0.00 0.00 0.00 1.82 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Trp1 chr2L + chr2L_10009422_10009480 chr2L_10009421_10009422;chr2L_10009480_10009481 chr2L_10009378_10009421;chr2L_10009481_10009536 100.00 97.30 100.00 99.04 98.25 100.00 100.00 98.78 99.44 100.00 100.00 100.00 100.00 100.00 98.68 100.00 98.15 100.00 98.48 99.33 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 97.40 98.77 95.83 100.00 98.44 100.00 100.00 97.83 100.00 99.21 100.00 100.00 97.22 98.04 100.00 100.00 98.91 100.00 100.00 100.00 96.97 100.00 98.82 100.00 98.39 98.65 K intron_retention I_chr3L_3223943_3224313,CG11505 chr3L + chr3L_3229193_3229252 chr3L_3229192_3229193;chr3L_3229252_3229253 chr3L_3228622_3229192;chr3L_3229253_3229779 0.00 0.00 0.00 2.27 0.00 3.77 1.45 0.95 0.67 0.00 1.85 0.71 0.00 1.89 0.00 0.00 0.00 0.00 0.00 2.26 0.00 2.96 2.86 0.00 0.00 0.00 3.31 6.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.10 0.00 0.00 0.78 1.61 0.00 1.94 0.00 1.12 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 K intron_retention CycD,I_chrX_15803256_15803313 chrX - chrX_15802067_15802129 chrX_15802066_15802067;chrX_15802129_15802130 chrX_15801892_15802066;chrX_15802130_15802349 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 4.35 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG42550 chr3R - chr3R_3826595_3826647 chr3R_3826595_3826641 chr3R_3826527_3826594;chr3R_3826648_3826710 22.73 15.00 17.39 21.62 25.00 23.53 19.35 25.49 24.07 16.67 23.53 21.21 21.74 29.41 15.00 28.57 18.75 26.09 21.05 20.45 14.29 NA 27.27 20.83 29.41 22.22 20.69 NA NA 7.14 23.08 30.00 NA 19.05 NA 40.00 21.43 29.41 10.53 24.00 NA 15.79 17.65 30.77 33.33 33.33 22.73 NA 20.83 34.62 27.27 32.00 NA 15.38 22.58 26.67 32.00 50.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2391522_2395659 chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2393243;chrX_2393712_2394269;chrX_2394396_2395151;chrX_2395275_2395659 chrX_2392055_2392148;chrX_2392516_2392664;chrX_2393244_2393711;chrX_2394270_2394395;chrX_2395152_2395274 chrX_2391422_2391521;chrX_2395660_2395759 37.50 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Tango9 chr3R - chr3R_7799735_7799795 chr3R_7799734_7799735;chr3R_7799795_7799796 chr3R_7798729_7799734;chr3R_7799796_7799949 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 2.20 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 13.21 0.00 0.00 0.00 4.00 3.92 9.09 9.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 K intron_retention CG4452 chr3L + chr3L_9361762_9362000 chr3L_9361761_9361762;chr3L_9362000_9362001 chr3L_9361668_9361761;chr3L_9362001_9362414 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 K alternative_acceptor TwdlG,RI_chr3R_75576_75628 chr3R - chr3R_75568_75628 chr3R_75576_75628 chr3R_75629_75728;chr3R_75476_75567 4.76 NA NA 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA K intron_retention TSG101 chr3L + chr3L_16836479_16836609 chr3L_16836478_16836479;chr3L_16836609_16836610 chr3L_16836397_16836478;chr3L_16836610_16836830 0.00 0.53 0.00 0.65 0.00 0.00 0.00 0.68 0.30 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.75 0.61 0.00 0.90 0.00 0.95 0.00 0.62 0.00 0.00 0.55 0.00 1.57 2.01 0.00 0.00 1.09 0.00 0.00 1.49 1.61 0.00 0.00 1.55 2.47 0.35 1.43 0.60 0.00 0.00 0.53 1.15 0.00 1.08 0.00 0.00 0.00 1.35 0.89 0.00 0.37 1.79 N jcn_only_AA RPA2,RI_chr2L_20925851_20925909 chr2L - chr2L_20925824_20925913 chr2L_20925851_20925913 chr2L_20925914_20925975;chr2L_20925751_20925823 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 81.27 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention fs(1)h,I_chrX_7950171_7952371,RI_chrX_7954192_7954783,I_chrX_7954192_7955240 chrX - chrX_7954192_7955296 chrX_7954191_7954192;chrX_7955296_7955297 chrX_7954092_7954191;chrX_7955297_7955340 4.35 NA NA NA NA NA 6.25 4.35 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 5.88 8.70 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA K intron_retention CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4988673_4988733 chr2L_4988672_4988673;chr2L_4988733_4988734 chr2L_4988115_4988672;chr2L_4988734_4988848 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.10 3.12 0.00 0.00 1.09 0.00 0.00 0.00 1.41 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.44 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Atet,chr2L_4334987_4335394.0,chr2L_4335788_4336447.0 chr2L + chr2L_4334105_4336449;chr2L_4334111_4336449;chr2L_4334031_4336449 chr2L_4334440_4336449 chr2L_4336450_4336957;chr2L_4333936_4334030 65.52 68.42 48.28 78.72 61.54 60.00 79.31 80.49 80.85 55.56 66.67 73.47 78.57 72.41 54.29 61.36 77.78 68.18 69.70 85.19 82.35 36.67 58.62 65.52 56.52 75.00 53.19 53.33 62.30 72.22 69.23 56.67 60.53 73.17 63.33 67.65 73.68 47.06 50.00 75.44 58.54 63.27 76.19 69.23 72.41 64.15 64.00 63.64 67.35 56.52 70.97 62.50 59.09 53.85 80.00 65.00 64.29 73.61 K multi_cassette cp309,I_chr3L_15074145_15074432 chr3L - chr3L_15066295_15067783 chr3L_15066295_15066406;chr3L_15066431_15067424;chr3L_15067593_15067783 chr3L_15066407_15066430;chr3L_15067425_15067592 chr3L_15066244_15066294;chr3L_15067784_15068947 22.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA NA NA K jcn_only_AD E(bx),I_chr3L_246324_246699 chr3L - chr3L_246324_246885;chr3L_246324_246438;chr3L_246324_246408;chr3L_246324_246382;chr3L_246324_246388;chr3L_246324_246427 chr3L_246324_246794 chr3L_246224_246323;chr3L_246886_246901 14.29 8.51 5.56 18.18 17.50 15.56 1.28 23.68 15.69 15.38 13.64 10.99 13.21 18.18 11.76 13.19 20.00 16.33 14.29 23.77 8.16 4.23 10.00 9.09 18.75 8.62 11.32 16.22 11.54 4.26 14.71 NA 3.23 15.12 15.00 20.75 21.57 25.81 17.39 5.48 NA 11.11 0.00 20.75 NA NA NA 14.29 10.10 NA 19.72 14.29 NA NA 13.21 NA NA NA K intron_retention Indy chr3L - chr3L_18822614_18822678 chr3L_18822613_18822614;chr3L_18822678_18822679 chr3L_18821761_18822613;chr3L_18822679_18823057 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.14 0.00 0.00 0.22 0.00 0.00 0.00 1.12 1.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6776,se chr3L + chr3L_8512082_8512611 chr3L_8512081_8512082;chr3L_8512611_8512612 chr3L_8511839_8512081;chr3L_8512612_8513382 0.00 0.00 0.55 0.87 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.64 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.78 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.40 0.93 0.00 0.63 0.00 1.20 0.00 0.00 0.00 1.39 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.69 0.43 0.00 0.27 1.54 K intron_retention CG11696,CG11695 chrX + chrX_11469672_11469730 chrX_11469671_11469672;chrX_11469730_11469731 chrX_11469287_11469671;chrX_11469731_11470231 11.32 10.20 3.45 15.79 19.35 12.50 18.75 18.18 14.67 23.53 14.29 10.94 10.71 23.08 24.24 25.00 19.05 21.88 26.09 22.37 10.71 19.44 8.97 3.28 0.00 12.90 16.67 16.07 6.78 11.43 22.73 0.00 8.33 16.13 6.06 12.20 8.26 6.35 10.13 12.00 0.00 10.53 16.67 11.32 7.32 10.00 5.77 25.00 21.74 4.26 5.48 2.38 0.00 6.15 17.14 4.35 5.26 0.00 K intron_retention bc10 chr3L + chr3L_5558472_5558626 chr3L_5558471_5558472;chr3L_5558626_5558627 chr3L_5558344_5558471;chr3L_5558627_5559197 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention LSm7 chr2L - chr2L_16742443_16742662 chr2L_16742442_16742443;chr2L_16742662_16742663 chr2L_16742326_16742442;chr2L_16742663_16742986 98.55 98.78 95.95 95.05 97.83 94.64 97.65 97.39 100.00 100.00 97.56 99.15 97.50 98.55 98.53 99.05 97.56 100.00 98.46 98.77 93.48 96.97 98.91 98.86 100.00 98.51 98.88 97.33 98.31 97.73 98.68 100.00 96.36 96.04 98.08 100.00 96.51 98.67 99.03 98.72 96.81 99.08 100.00 98.70 98.33 96.23 99.07 100.00 99.18 98.75 98.98 100.00 97.27 99.15 94.94 99.03 98.40 98.18 K intron_retention eIF4G,I_chr4_948813_950447 chr4 - chr4_950758_951137 chr4_950757_950758;chr4_951137_951138 chr4_950706_950757;chr4_951138_951213 0.00 NA 0.00 0.00 0.00 0.00 3.70 0.00 0.00 NA 0.00 0.00 4.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA 1.59 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083522_8089184 chr2L_8083521_8083522;chr2L_8089184_8089185 chr2L_8083444_8083521;chr2L_8089185_8089284 47.22 50.00 33.33 43.40 63.64 60.00 45.05 32.89 42.00 41.67 54.55 53.42 27.50 46.81 40.00 39.52 48.39 30.00 30.77 44.62 58.82 50.00 54.55 75.00 43.75 47.22 62.50 72.73 64.29 60.87 41.67 35.71 48.57 33.78 44.44 48.15 66.67 58.33 50.00 56.25 35.29 45.76 41.86 42.86 50.00 46.88 50.00 43.48 39.74 69.23 60.00 75.00 80.00 NA 44.00 NA 87.50 41.67 K intron_retention UBL3 chrX - chrX_15744744_15745120 chrX_15744743_15744744;chrX_15745120_15745121 chrX_15744579_15744743;chrX_15745121_15745229 0.00 0.00 0.00 0.00 0.00 0.00 2.13 1.67 0.00 NA 0.00 3.77 5.71 0.00 0.00 3.64 0.00 0.00 0.00 2.04 0.00 0.00 3.45 0.00 NA 0.00 6.67 NA NA NA 0.00 0.00 NA 2.78 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 NA 0.00 5.13 0.00 0.00 8.33 K intron_retention RpL35,I_chrX_5566913_5567030,I_chrX_5567168_5567220 chrX + chrX_5566913_5567030 chrX_5566912_5566913;chrX_5567030_5567031 chrX_5566813_5566912;chrX_5567031_5567130 92.82 NA NA 87.50 NA NA 94.12 90.91 92.31 NA NA 100.00 NA NA NA 88.89 NA NA NA 100.00 NA 90.91 100.00 NA NA NA 100.00 93.33 100.00 NA 88.89 NA NA 100.00 NA NA NA NA NA 88.89 90.00 93.33 NA NA NA 90.00 NA 100.00 93.75 90.91 88.89 NA NA NA 100.00 NA NA 90.00 K multi_cassette PP2A-B',RI_chr3R_13993929_13994503 chr3R + chr3R_13993929_13997250 chr3R_13993929_13995205;chr3R_13995271_13995378;chr3R_13995821_13997250 chr3R_13995206_13995270;chr3R_13995379_13995820 chr3R_13993860_13993928;chr3R_13997251_13997425 90.00 NA 100.00 100.00 NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA 75.00 NA NA 100.00 NA NA NA NA NA NA 100.00 NA 100.00 80.00 100.00 75.00 100.00 100.00 75.00 66.67 100.00 66.67 NA NA NA NA NA 75.00 75.00 75.00 NA 100.00 NA 100.00 NA NA NA NA 75.00 K alternative_donor Df31,RE_chr2L_21628206_21629662,I_chr2L_21628206_21629666,I_chr2L_21628210_21628515,I_chr2L_21628210_21628944,I_chr2L_21628210_21629216,EI_chr2L_21628210_21629715,REI_chr2L_21628210_21629884,I_chr2L_21628224_21629666,I_chr2L_21628734_21629666 chr2L - chr2L_21628210_21629666;chr2L_21628210_21628515;chr2L_21628210_21628944;chr2L_21628210_21629715;chr2L_21628210_21629884 chr2L_21628210_21629216 chr2L_21628124_21628209;chr2L_21629885_21629918 0.27 0.00 0.34 0.34 0.19 0.21 0.20 0.45 0.22 0.20 0.00 0.47 0.48 0.15 0.30 0.23 0.32 0.19 0.23 0.57 0.40 0.56 0.31 0.27 0.24 0.17 0.31 0.43 0.33 0.19 0.33 0.24 0.24 0.33 0.20 0.24 0.29 0.37 0.62 0.69 0.51 0.42 0.31 0.27 0.19 0.25 0.16 0.19 0.14 0.27 0.28 0.15 0.00 0.38 0.13 0.44 0.16 0.13 K jcn_only_AA CG4360 chr3R - chr3R_16151875_16152037 chr3R_16151951_16152037 chr3R_16152038_16152520;chr3R_16150089_16151874 13.45 14.35 13.33 30.81 16.84 12.50 30.97 14.81 17.83 8.78 16.67 12.76 17.24 17.39 10.34 22.45 23.17 19.77 20.20 11.70 10.53 11.85 16.32 14.32 14.29 18.56 10.67 13.27 12.75 10.47 14.63 8.40 12.97 16.96 8.42 18.87 12.50 12.88 12.16 13.38 14.11 13.45 15.53 10.64 8.91 9.34 10.13 6.68 15.14 14.98 14.33 20.00 7.99 8.54 18.18 10.45 14.41 7.80 K alternative_donor Rab11,I_chr3R_16937578_16940474,I_chr3R_16937759_16939667,RE_chr3R_16939259_16939667 chr3R + chr3R_16937578_16939667 chr3R_16939259_16939667 chr3R_16939668_16939767;chr3R_16937478_16937577 0.54 0.56 0.47 0.40 0.28 0.55 0.49 0.33 0.47 0.62 0.52 1.23 0.52 0.53 0.46 0.66 0.27 0.75 0.57 0.54 0.60 1.37 0.87 0.54 1.02 0.40 0.80 2.05 1.28 0.32 0.66 0.81 0.36 0.43 0.39 0.83 0.45 0.38 0.64 0.61 0.27 0.49 0.55 0.69 0.30 0.45 0.84 0.59 0.54 0.65 0.54 0.48 0.70 0.66 0.40 0.68 0.57 0.19 K intron_retention CG31108,RI_chr3R_20940642_20940700,CG31510 chr3R - chr3R_20940646_20940700 chr3R_20940645_20940646;chr3R_20940700_20940701 chr3R_20938738_20940645;chr3R_20940701_20940800 0.00 NA NA 18.52 NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention sec15 chr3R - chr3R_16933476_16933539 chr3R_16933475_16933476;chr3R_16933539_16933540 chr3R_16932358_16933475;chr3R_16933540_16933773 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 16.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 K cassette CG17665 chr2R - chr2R_126662_130265 chr2R_126662_129940;chr2R_130205_130265 chr2R_129941_130204 chr2R_126199_126661;chr2R_130266_130352 100.00 100.00 100.00 98.39 100.00 100.00 100.00 98.57 100.00 100.00 100.00 98.28 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 92.31 100.00 95.83 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 84.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD ran,I_chrX_11040449_11042518,I_chrX_11040462_11041873,I_chrX_11040462_11042000 chrX - chrX_11040462_11041873;chrX_11040462_11042518 chrX_11040462_11042000 chrX_11040362_11040461;chrX_11042519_11042618 0.00 0.10 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.38 0.00 0.08 0.00 0.00 0.00 0.18 0.17 0.00 0.00 0.00 0.37 0.46 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.51 0.09 0.09 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.09 0.17 0.07 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2393243 chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2393244_2393291 0.00 NA NA NA NA NA NA NA NA NA NA 2.70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG8176,I_chr3R_5348614_5348964 chr3R + chr3R_5350030_5350103 chr3R_5350029_5350030;chr3R_5350103_5350104 chr3R_5349924_5350029;chr3R_5350104_5350444 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ac78C,F_chr3L_21141024_21153737 chr3L - chr3L_21140532_21140594 chr3L_21140531_21140532;chr3L_21140594_21140595 chr3L_21140234_21140531;chr3L_21140595_21141033 1.94 0.00 0.00 15.56 0.00 8.33 2.94 5.88 6.94 0.00 0.00 4.65 0.00 10.53 3.33 0.00 0.00 7.14 7.69 3.39 0.00 2.63 0.00 2.44 4.65 NA 17.86 0.00 0.00 1.27 0.00 5.88 2.34 2.38 0.00 8.11 5.71 0.00 0.00 1.94 8.00 4.76 0.00 0.00 4.00 0.00 0.00 2.50 5.56 0.00 2.33 0.00 0.00 NA 0.00 4.76 0.00 0.00 N intron_retention CG14235,noncoding_24847,CG18809,noncoding_24848 chrX - chrX_19637740_19638032 chrX_19637739_19637740;chrX_19638032_19638033 chrX_19637477_19637739;chrX_19638033_19638057 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 43.75 NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA K jcn_only_AA CG2701,RI_chrX_2612780_2612845,ttm50 chrX - chrX_2612780_2612845 chrX_2612784_2612845 chrX_2612846_2612945;chrX_2612680_2612779 97.22 96.00 95.65 98.84 96.97 97.44 100.00 97.56 97.67 93.33 100.00 95.60 96.67 100.00 100.00 94.67 100.00 100.00 98.00 100.00 97.73 96.40 96.03 97.89 94.55 91.07 97.35 96.88 97.56 95.77 91.67 97.59 96.33 95.77 94.64 94.81 97.22 89.86 96.61 97.52 94.12 97.25 100.00 97.89 99.06 96.69 99.04 93.88 97.73 97.54 98.10 96.30 93.27 98.06 94.29 96.63 97.22 97.17 K mutually_exclusive CG9171,I_chr2L_5771210_5773014,RI_chr2L_5792418_5799117,I_chr2L_5799412_5800043 chr2L - chr2L_5771210_5799117,chr2L_5799412_5800043 chr2L_5771210_5787964,chr2L_5787985_5800043 chr2L_5799118_5799411 chr2L_5787965_5787984 chr2L_5771110_5771209;chr2L_5800044_5800143 0.00 NA NA NA NA NA 0.00 NA 44.44 NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 16.67 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 40.00 NA 16.67 0.00 NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA K alternative_donor pr-set7 chr3R + chr3R_10142132_10142198;chr3R_10142094_10142198 chr3R_10142103_10142198 chr3R_10142199_10142589;chr3R_10142068_10142093 75.72 NA NA NA NA NA NA NA 71.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 85.71 NA NA NA NA NA NA NA NA NA K cassette CG32091 chr3L + chr3L_11624691_11633167 chr3L_11624691_11627713;chr3L_11628292_11633167 chr3L_11627714_11628291 chr3L_11624626_11624690;chr3L_11633168_11633271 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K multi_cassette Cda5 chr2L - chr2L_29069_34557 chr2L_29069_30393;chr2L_33271_33844;chr2L_34284_34557 chr2L_30394_33270;chr2L_33845_34283 chr2L_29024_29068;chr2L_34558_34596 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG9328 chr2L + chr2L_20798515_20813155 chr2L_20798514_20798515;chr2L_20813155_20813156 chr2L_20797964_20798514;chr2L_20813156_20813357 12.73 12.36 20.93 17.89 17.74 18.75 19.32 19.55 15.71 2.88 13.16 19.85 20.45 28.05 24.74 23.00 20.25 20.31 20.00 9.09 12.50 7.14 13.33 7.63 10.38 19.40 16.30 11.48 18.52 10.29 14.93 5.19 10.00 22.83 21.69 8.89 2.82 9.00 9.60 13.53 6.96 14.14 24.42 3.60 0.00 5.65 4.76 11.80 20.00 9.21 12.23 12.73 2.21 2.04 17.65 4.35 2.61 3.31 K jcn_only_AD mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818597_7818970 chr3R_7818597_7818853 chr3R_7818507_7818596;chr3R_7818971_7818995 9.89 7.69 12.50 10.11 5.77 10.00 NA 10.26 3.74 4.76 8.82 12.50 8.00 14.29 2.22 7.14 6.90 5.00 9.80 10.91 14.29 1.92 4.35 NA NA 10.91 17.24 NA NA 9.52 5.00 NA 12.50 11.59 NA NA 0.00 0.00 10.00 10.14 NA 4.55 10.42 15.15 NA 13.33 NA NA 9.89 0.00 11.43 5.00 NA NA 15.69 10.00 0.00 17.50 K intron_retention cdc2c,RI_chr3R_16562395_16562445 chr3R + chr3R_16562009_16562062 chr3R_16562008_16562009;chr3R_16562062_16562063 chr3R_16561813_16562008;chr3R_16562063_16562173 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA 17.65 NA NA NA NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 NA K jcn_only_AD Mtch,RI_chr3L_184729_185366,I_chr3L_185367_185925 chr3L + chr3L_184670_184777;chr3L_184663_184777 chr3L_184682_184777 chr3L_184778_184854;chr3L_184654_184662 70.00 NA NA NA NA 61.90 NA NA 70.00 NA NA NA NA NA NA NA NA NA NA 64.00 NA NA NA NA NA NA NA NA NA NA 70.00 NA NA 62.50 NA NA NA NA NA 80.00 NA 59.26 NA NA NA NA NA 81.82 73.91 NA NA NA NA NA 68.00 NA NA 75.00 K intron_retention CG31716,I_chr2L_10397648_10398034 chr2L + chr2L_10398741_10399316 chr2L_10398740_10398741;chr2L_10399316_10399317 chr2L_10398654_10398740;chr2L_10399317_10399535 3.52 0.00 6.67 13.89 7.41 0.00 5.56 6.90 7.14 0.00 0.00 4.00 21.88 6.67 10.00 3.85 2.70 0.00 6.98 6.56 0.00 0.00 0.00 3.70 NA 3.03 0.00 NA NA 0.00 4.88 0.00 NA 1.54 0.00 NA 3.33 3.23 12.50 0.00 NA 8.22 0.00 3.33 NA 0.00 NA 4.55 8.47 5.88 6.45 7.41 0.00 NA 10.26 4.76 0.00 0.00 K intron_retention Amun,I_chrX_11607839_11608272,I_chrX_11607842_11608105,I_chrX_11607842_11608125,RI_chrX_11607842_11608272 chrX - chrX_11607722_11607787 chrX_11607721_11607722;chrX_11607787_11607788 chrX_11606802_11607721;chrX_11607788_11607838 4.76 4.65 9.23 16.42 2.33 6.25 4.65 5.06 3.70 0.00 10.00 6.19 0.00 0.00 4.69 4.17 4.44 5.66 0.00 5.60 5.26 3.03 7.27 7.27 12.20 12.20 20.31 12.50 9.68 3.45 5.77 7.69 3.45 2.56 2.86 9.43 3.64 4.62 6.74 3.60 12.00 4.21 0.00 8.16 1.59 3.39 5.77 4.88 3.60 4.44 7.81 5.26 2.00 0.00 6.90 3.64 5.88 4.76 K jcn_only_AD heix,I_chr2L_16298194_16298401 chr2L - chr2L_16298194_16298871 chr2L_16298194_16298401 chr2L_16298094_16298193;chr2L_16298872_16298888 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 1.34 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 3.64 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 2.82 4.55 0.00 0.00 1.56 0.00 0.00 1.19 0.00 0.00 0.00 2.75 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor sti,REI_chr3L_12506503_12506561 chr3L - chr3L_12504883_12505134 chr3L_12504904_12505134 chr3L_12505135_12506502;chr3L_12503401_12504882 100.00 100.00 100.00 97.14 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention TER94 chr2R + chr2R_5877895_5877975 chr2R_5877894_5877895;chr2R_5877975_5877976 chr2R_5877708_5877894;chr2R_5877976_5878078 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K intron_retention hipk,RI_chr3L_548068_552227 chr3L + chr3L_573991_574057 chr3L_573990_573991;chr3L_574057_574058 chr3L_573056_573990;chr3L_574058_574185 0.21 0.33 0.87 0.62 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.42 0.56 0.61 0.43 0.00 1.18 0.00 0.00 0.33 0.00 0.33 0.00 0.00 0.81 0.00 1.19 2.33 0.22 0.88 0.62 0.00 0.98 0.55 0.00 0.34 0.11 0.00 0.75 0.00 0.00 0.17 0.00 0.00 0.31 0.90 0.00 0.43 0.21 0.00 1.22 0.47 0.00 0.00 0.82 0.00 0.00 0.33 K alternative_acceptor gw,I_chr4_678308_678527,I_chr4_679135_681671 chr4 - chr4_678308_678527 chr4_678311_678527 chr4_678528_678627;chr4_678208_678307 100.00 97.73 98.72 99.15 100.00 100.00 99.09 100.00 99.44 100.00 100.00 100.00 100.00 98.72 100.00 100.00 98.63 98.18 100.00 99.48 100.00 99.34 99.13 100.00 100.00 100.00 98.95 100.00 100.00 99.43 98.73 98.18 99.16 100.00 98.84 99.40 99.22 100.00 100.00 99.41 98.51 99.27 100.00 99.13 98.81 100.00 97.92 99.55 99.29 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.50 K jcn_only_AA Nedd4,I_chr3L_17532828_17532882,I_chr3L_17532828_17533787,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17532828_17532882;chr3L_17532828_17533790 chr3L_17532828_17533787 chr3L_17532728_17532827;chr3L_17533791_17533887 3.12 NA NA 0.00 NA 3.33 3.12 3.85 2.04 NA NA 9.43 NA NA 2.78 0.00 NA 4.17 4.35 6.67 NA NA 5.71 0.00 NA 0.00 0.00 NA 6.06 NA 0.00 NA 0.00 5.56 0.00 7.14 0.00 3.12 3.33 3.64 NA 5.00 NA 4.17 NA NA NA 0.00 5.13 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention Vha16,I_chr2R_2515127_2515236,I_chr2R_2519646_2520298 chr2R - chr2R_2515180_2515236 chr2R_2515179_2515180;chr2R_2515236_2515237 chr2R_2513343_2515179;chr2R_2515237_2515336 0.00 0.15 0.00 0.11 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.26 0.21 0.00 0.23 0.00 0.37 0.19 0.00 0.00 0.00 0.82 1.60 0.27 0.33 0.00 0.00 0.13 0.12 0.00 0.00 0.22 0.00 0.00 0.15 0.29 0.16 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 K intron_retention CG18659,E_chr2R_5011363_5019110,RI_chr2R_5013572_5014531,I_chr2R_5016147_5016997 chr2R - chr2R_5013719_5014923 chr2R_5013718_5013719;chr2R_5014923_5014924 chr2R_5013707_5013718;chr2R_5014924_5015382 17.16 21.43 20.00 29.03 7.41 16.00 21.05 22.22 12.50 NA 16.67 28.57 28.00 0.00 18.52 26.09 4.00 17.65 3.70 20.00 11.11 13.95 13.33 10.53 9.09 8.00 27.03 26.67 20.83 16.67 30.77 NA 18.52 13.33 11.11 38.89 17.65 16.67 8.11 19.51 35.29 14.58 6.67 21.43 5.56 37.50 10.81 33.33 21.95 10.53 13.46 8.33 13.33 NA 20.00 18.52 11.11 30.77 K alternative_acceptor CG7110,E_chr2L_13399145_13399217,CR_chr2L_13405706_13410507 chr2L + chr2L_13399141_13399217 chr2L_13399141_13399192 chr2L_13399135_13399140;chr2L_13399218_13399317 0.00 0.00 0.00 2.56 NA 0.00 6.90 0.00 0.00 NA 6.67 0.00 0.00 0.00 4.35 2.38 NA 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA 2.27 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.70 0.00 NA NA 0.00 0.00 1.67 0.00 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention CG10737 chr2R + chr2R_15064249_15065323 chr2R_15064248_15064249;chr2R_15065323_15065324 chr2R_15064096_15064248;chr2R_15065324_15065674 0.00 0.00 0.00 1.35 0.88 0.00 0.00 1.46 1.11 0.00 1.71 1.96 0.00 0.00 2.11 0.00 0.00 0.00 1.80 0.00 1.83 0.00 0.00 0.00 0.00 0.84 0.00 2.44 1.33 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.62 0.00 1.16 0.00 0.00 0.81 0.99 0.00 0.00 0.00 0.00 2.04 0.96 0.00 0.49 0.00 0.00 0.00 1.28 1.13 0.00 0.00 K alternative_donor KdelR,CG5188 chr2L + chr2L_10427004_10427075 chr2L_10427009_10427075 chr2L_10427076_10428159;chr2L_10426867_10427003 6.62 6.47 5.80 7.73 6.94 6.22 6.82 7.85 6.98 4.19 6.72 7.58 6.62 7.95 4.85 6.33 7.73 6.13 5.23 6.29 5.90 5.80 7.96 6.08 7.98 6.99 10.92 16.06 7.93 6.36 6.40 5.30 8.51 5.92 6.76 6.90 6.54 4.06 6.18 7.64 8.20 7.00 5.42 8.41 6.59 5.65 6.47 7.22 7.12 7.91 6.80 4.51 8.78 6.38 5.60 5.94 5.88 7.59 K intron_retention Rga,Spec2 chr3R - chr3R_1433880_1434171 chr3R_1433879_1433880;chr3R_1434171_1434172 chr3R_1433681_1433879;chr3R_1434172_1434741 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.80 0.00 0.00 0.00 2.00 0.98 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.76 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG11873,I_chr3R_24900749_24922953 chr3R + chr3R_24923583_24923691 chr3R_24923583_24923688 chr3R_24923274_24923582;chr3R_24923692_24927151 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 93.75 100.00 NA 100.00 100.00 100.00 100.00 87.50 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 90.00 100.00 95.00 88.89 100.00 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 90.00 NA NA 100.00 NA NA NA K jcn_only_AD Cdk4,RI_chr2R_12471503_12471656 chr2R + chr2R_12467202_12468346;chr2R_12467432_12468346;chr2R_12467241_12468346;chr2R_12467275_12468346;chr2R_12467474_12468346;chr2R_12467225_12468346;chr2R_12467227_12468346;chr2R_12467261_12468346 chr2R_12467039_12468346 chr2R_12468347_12468520;chr2R_12467030_12467038 36.14 37.04 39.47 42.22 NA 40.00 19.35 29.31 44.87 NA 46.67 53.33 44.74 25.81 45.95 44.23 26.92 36.36 40.48 35.92 45.83 25.81 20.00 16.67 NA 50.00 38.10 NA NA NA 41.94 NA 35.00 42.37 NA 17.39 44.44 NA NA 20.00 NA 38.10 NA NA 28.57 6.67 NA NA 43.48 20.69 15.38 23.81 NA NA 27.59 21.43 20.69 22.58 K jcn_only_AA I_chr2R_8626010_8636417,CG12488,I_chr2R_8637781_8637845 chr2R + chr2R_8637781_8637845 chr2R_8637781_8637842 chr2R_8637681_8637780;chr2R_8637846_8637945 95.95 94.67 93.33 96.30 98.08 94.74 94.83 96.10 96.81 95.92 93.44 94.34 96.15 97.92 98.73 95.83 94.74 90.74 98.04 97.60 95.83 100.00 91.49 98.06 91.80 95.95 95.35 97.10 98.55 96.51 97.30 93.44 95.65 94.85 95.79 89.71 95.08 96.39 97.18 98.68 96.39 96.92 92.73 93.33 91.74 96.04 98.41 96.12 93.86 96.05 95.83 92.16 96.15 98.78 96.47 97.59 94.29 95.74 K cassette CG12768,I_chr3L_22903673_22904689,CEF_chr3L_22903677_22904938,I_chr3L_22913779_22916461 chr3L + chr3L_22903673_22904933 chr3L_22903673_22904689;chr3L_22904856_22904933 chr3L_22904690_22904855 chr3L_22903665_22903672;chr3L_22904934_22905333 29.17 44.44 22.22 61.54 33.33 33.33 44.44 50.00 30.00 NA NA 42.86 NA 18.18 44.44 21.05 NA NA NA 17.65 30.00 57.14 12.50 25.00 NA 41.67 25.00 NA 30.00 NA 33.33 NA NA 42.86 NA 30.77 12.50 25.00 25.00 21.43 NA 35.29 NA 33.33 45.45 21.43 23.53 33.33 42.86 21.05 29.17 21.43 10.53 25.00 25.00 13.33 9.68 17.65 K jcn_only_AD CG7337,I_chr2L_1910010_1910066,RI_chr2L_1911951_1913208,RI_chr2L_1912284_1913208,I_chr2L_1938620_1938887,I_chr2L_1942183_1942233 chr2L + chr2L_1912235_1913208;chr2L_1912284_1913208;chr2L_1911870_1913208 chr2L_1911951_1913208 chr2L_1913209_1913308;chr2L_1911851_1911869 30.77 NA NA NA NA NA 29.03 37.04 47.22 NA NA NA NA 45.00 38.10 22.22 NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA 16.67 NA NA 34.62 NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA 26.67 NA NA NA NA NA NA NA NA NA K intron_retention CG3164,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_123795_123855 chr2L_123794_123795;chr2L_123855_123856 chr2L_123694_123794;chr2L_123856_124024 0.00 0.00 0.00 0.44 0.00 0.00 0.39 0.00 0.63 2.13 0.00 0.00 0.00 0.76 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.69 1.46 0.00 0.00 0.00 0.74 0.00 0.00 0.00 K alternative_acceptor Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824086_11824525 chr2R_11824089_11824525 chr2R_11824526_11824611;chr2R_11823989_11824085 35.71 34.48 55.56 25.00 NA NA NA 50.00 33.33 25.00 NA 66.67 NA 35.71 50.00 41.67 35.71 NA NA 28.17 33.33 82.35 30.43 27.50 36.36 NA 29.17 36.36 45.45 48.00 33.33 50.00 58.62 50.00 27.27 33.33 26.98 21.62 25.00 41.18 60.00 33.33 NA 41.67 30.30 37.14 37.50 50.00 39.39 28.21 36.36 19.23 25.64 26.47 38.89 22.22 27.08 40.00 K intron_retention CG14543 chr3R + chr3R_21882505_21882568 chr3R_21882504_21882505;chr3R_21882568_21882569 chr3R_21882324_21882504;chr3R_21882569_21883141 3.82 5.71 4.00 2.94 0.00 0.00 7.69 2.33 4.26 3.57 0.00 3.51 5.56 0.00 3.45 7.89 NA 0.00 5.26 2.30 0.00 6.12 4.65 6.52 6.25 0.00 5.71 7.69 2.27 6.25 5.26 4.17 5.26 5.00 0.00 5.56 5.26 5.26 6.90 5.80 8.89 3.64 0.00 0.00 2.78 1.45 4.23 2.78 4.76 0.00 4.62 5.56 0.91 0.00 0.00 1.82 0.00 0.00 K intron_retention par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,I_chr2R_15350149_15350210,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350149_15351814 chr2R_15350148_15350149;chr2R_15351814_15351815 chr2R_15350068_15350148;chr2R_15351815_15351914 80.91 NA NA 64.29 NA NA 83.33 80.00 94.12 NA NA 88.89 NA 88.89 70.00 90.00 NA NA NA 88.24 NA 90.91 81.82 75.00 NA 72.73 NA NA NA NA 69.23 NA NA 72.22 87.50 83.33 NA NA NA 77.78 NA 76.92 NA NA NA NA NA NA 76.47 NA NA 88.89 NA NA 77.78 NA NA NA K alternative_donor CG17385,I_chr2R_10298790_10298843 chr2R - chr2R_10298790_10298841;chr2R_10298790_10298843 chr2R_10298790_10298847 chr2R_10298690_10298789;chr2R_10298848_10298916 100.00 99.43 100.00 99.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.57 100.00 99.35 100.00 99.80 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.56 100.00 100.00 99.45 100.00 100.00 100.00 100.00 100.00 99.61 100.00 100.00 99.44 100.00 99.69 100.00 100.00 100.00 99.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.59 K intron_retention Kr-h2 chr2L + chr2L_6072677_6072733 chr2L_6072676_6072677;chr2L_6072733_6072734 chr2L_6072414_6072676;chr2L_6072734_6072983 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG42540,CE_chr3L_4563905_4577916,C_chr3L_4563905_4578759 chr3L + chr3L_4563897_4578759 chr3L_4563897_4577916 chr3L_4563877_4563896 3.12 NA NA 3.12 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RI_chrX_6482284_6482336,Pat1,chrX_6485101_6485457.0,I_chrX_6489999_6490050,APC7 chrX + chrX_6485039_6485478 chrX_6485038_6485039;chrX_6485478_6485479 chrX_6484902_6485038;chrX_6485479_6485796 10.26 NA 6.67 8.33 NA NA 18.18 18.52 20.00 13.33 NA 8.82 10.00 13.33 13.04 18.52 30.77 16.67 12.50 2.86 NA 0.00 10.26 11.54 0.00 0.00 16.67 11.11 0.00 15.79 15.00 NA 9.09 9.52 7.41 8.33 16.67 NA 8.70 4.88 0.00 22.22 15.38 7.41 NA 4.55 10.00 3.12 17.65 27.78 7.69 NA NA NA 11.76 NA 21.05 0.00 K alternative_donor CG7337,I_chr2L_1910010_1910066,RI_chr2L_1911951_1913208,RI_chr2L_1912284_1913208,I_chr2L_1938620_1938887,I_chr2L_1942183_1942233 chr2L + chr2L_1912235_1913208;chr2L_1912284_1913208;chr2L_1911870_1913208 chr2L_1911951_1913208 chr2L_1913209_1913308;chr2L_1911851_1911869 26.51 22.22 28.57 22.22 20.00 30.00 20.83 28.57 26.92 NA 33.33 21.05 16.67 37.50 25.00 17.24 36.36 30.77 10.00 26.09 36.36 0.00 30.00 33.33 40.00 42.86 18.18 NA NA 60.00 23.08 NA NA 26.09 0.00 16.67 NA 28.57 NA 27.27 NA 19.05 27.27 25.00 NA NA NA 83.33 25.93 NA 21.43 28.57 NA NA 33.33 NA NA NA K jcn_only_AA CG1746,I_chr3R_27042457_27043461,RNaseP:RNA,RI_chr3R_27044771_27045268 chr3R - chr3R_27042457_27043461 chr3R_27042900_27043461 chr3R_27043462_27043561;chr3R_27042432_27042456 100.00 99.96 100.00 100.00 99.94 100.00 99.90 99.96 100.00 99.85 100.00 99.97 100.00 100.00 100.00 99.88 99.94 100.00 100.00 99.98 100.00 98.68 100.00 100.00 100.00 100.00 100.00 99.83 99.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.98 100.00 99.95 99.92 100.00 99.97 100.00 100.00 100.00 99.95 99.96 100.00 100.00 99.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261460_263113 chr4_261459_261460;chr4_263113_263114 chr4_261360_261459;chr4_263114_263305 76.67 NA 75.00 77.78 NA NA 94.44 93.75 68.42 NA NA 75.00 NA 100.00 NA 76.67 NA NA NA 78.57 NA NA NA NA NA NA NA NA NA NA 61.54 NA NA 81.25 NA NA NA NA NA NA NA 64.29 91.67 NA NA NA NA NA 70.59 NA NA NA NA NA 54.55 NA NA NA K alternative_donor CG3419 chr2R + chr2R_20299633_20299700 chr2R_20299643_20299700 chr2R_20299701_20301588;chr2R_20299436_20299632 94.12 100.00 88.89 92.31 NA 100.00 100.00 90.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 88.89 100.00 94.74 100.00 NA 90.00 93.75 90.00 NA 87.50 100.00 100.00 90.91 87.50 NA NA 100.00 NA 94.74 94.12 85.71 93.33 100.00 NA 100.00 NA 84.62 NA 100.00 88.89 NA 100.00 NA 90.00 NA 91.67 87.50 91.67 88.89 100.00 NA K intron_retention DCAP,RI_chr2R_6183553_6192101,I_chr2R_6188094_6192101 chr2R + chr2R_6192436_6192492 chr2R_6192435_6192436;chr2R_6192492_6192493 chr2R_6192129_6192435;chr2R_6192493_6192607 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon Ranbp16,I_chrX_15826655_15827277 chrX - chrX_15821870_15823373 chrX_15823292_15823373,chrX_15823300_15823373 chrX_15821377_15821869 chrX_15823206_15823291 chrX_15823374_15823435 2.13 3.03 0.00 5.17 0.00 3.12 2.13 1.96 3.03 0.00 10.00 1.49 0.00 0.00 4.55 0.00 0.00 0.00 0.00 1.15 7.14 10.71 1.64 0.00 0.00 2.70 0.00 0.00 0.00 0.00 2.04 2.86 3.33 1.89 3.85 6.25 0.00 0.00 3.51 2.50 4.17 1.52 0.00 5.41 0.00 5.26 2.63 2.44 1.59 3.57 0.00 3.70 4.00 8.57 2.70 2.56 6.67 7.14 K jcn_only_AD CG2003 chr3R + chr3R_27812832_27814973;chr3R_27812907_27814973 chr3R_27812850_27814973 chr3R_27814974_27815051;chr3R_27812763_27812831 95.28 94.00 90.38 100.00 92.00 93.33 96.67 93.91 95.95 NA 97.30 95.65 96.63 91.07 89.29 94.59 97.73 94.55 96.61 91.43 88.89 NA 100.00 95.12 86.36 95.65 93.33 NA NA 91.67 96.10 92.00 81.82 93.40 97.87 96.15 96.15 100.00 100.00 94.44 81.40 93.46 90.91 95.00 96.55 93.22 95.65 87.80 95.83 96.97 96.15 95.45 100.00 NA 92.31 100.00 95.45 95.65 K intron_retention mRNA-capping-enzyme,I_chrX_14135349_14135413 chrX - chrX_14135352_14135413 chrX_14135351_14135352;chrX_14135413_14135414 chrX_14135213_14135351;chrX_14135414_14135513 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.21 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention cul-2,RI_chr2L_21657668_21657832,noncoding_4226,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21657668_21657832 chr2L_21657667_21657668;chr2L_21657832_21657833 chr2L_21657659_21657667;chr2L_21657833_21657932 26.32 23.53 28.57 55.56 NA 38.10 52.94 43.59 37.50 24.24 26.09 44.44 56.25 45.45 35.48 33.33 30.77 19.05 33.33 25.42 26.09 20.14 24.21 35.56 26.56 22.22 34.55 36.22 23.16 21.11 42.86 18.00 12.09 30.77 23.81 19.42 34.62 27.27 13.64 16.67 14.04 27.66 53.33 22.34 10.00 16.67 21.28 20.51 34.00 20.55 35.48 41.03 33.33 23.21 24.24 17.78 27.78 18.75 K jcn_only_AA Tango2,I_chrX_13512436_13512575,RI_chrX_13543535_13546911,I_chrX_13544101_13544542 chrX + chrX_13512436_13512629 chrX_13512436_13512575 chrX_13512336_13512435;chrX_13512630_13512675 0.00 0.00 0.00 6.06 0.00 0.00 0.00 2.94 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.45 0.00 NA 0.00 0.00 0.00 4.88 2.94 1.72 0.00 NA 0.00 0.00 4.08 0.00 2.70 0.00 2.56 0.00 0.00 0.00 0.00 0.00 1.89 0.00 2.27 2.13 NA 2.08 1.92 1.82 0.00 0.00 2.78 2.50 0.00 NA NA 0.00 0.00 0.00 3.33 0.00 K jcn_only_AD CG8468 chr2R + chr2R_10107616_10108112;chr2R_10107651_10108112;chr2R_10107621_10108112 chr2R_10107548_10108112 chr2R_10108113_10108270;chr2R_10107405_10107547 93.41 89.95 95.11 92.80 90.83 89.41 87.50 92.26 91.09 94.83 89.55 95.92 93.08 93.41 90.00 88.46 92.55 93.90 93.53 91.12 91.16 92.35 95.12 94.81 90.91 87.33 93.65 97.09 99.24 99.41 92.99 96.24 98.89 92.03 95.40 91.06 92.00 93.06 91.30 95.96 96.60 94.59 94.59 94.49 95.43 97.75 92.09 97.76 92.37 92.31 95.68 91.46 98.78 96.94 92.38 96.32 95.50 97.91 K alternative_donor I_chrX_11910759_11910811,CG15735 chrX + chrX_11912974_11913660 chrX_11913359_11913660 chrX_11913661_11913791;chrX_11912677_11912973 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.02 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette mew,I_chrX_13133259_13150649 chrX - chrX_13119145_13150649 chrX_13119145_13133189;chrX_13133259_13150649 chrX_13133190_13133258 chrX_13119017_13119144;chrX_13150650_13150749 0.89 0.00 1.39 1.09 0.00 1.59 1.15 1.00 0.51 0.00 3.92 0.62 0.00 0.00 0.00 0.97 0.00 1.79 0.00 0.60 1.54 0.00 1.30 0.88 1.92 2.38 1.25 NA 4.76 1.30 2.00 0.00 0.00 1.64 1.45 0.00 0.78 0.00 0.91 0.89 NA 0.63 1.82 0.00 2.86 0.00 0.00 0.00 0.62 3.03 0.89 2.63 0.00 2.63 0.00 1.85 1.96 0.00 K jcn_only_AD CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3088120_3088191;chr3L_3088129_3088191;chr3L_3088124_3088191 chr3L_3088139_3088191 chr3L_3088192_3088663;chr3L_3087957_3088119 0.54 0.45 0.00 1.32 0.62 0.00 0.44 1.17 0.69 1.10 0.00 0.67 0.00 2.08 2.09 0.53 2.21 1.10 0.00 1.10 0.00 1.26 0.34 0.85 0.65 0.00 0.47 0.00 0.76 0.00 0.00 0.00 0.48 0.00 1.21 0.54 0.00 0.54 1.49 0.00 0.00 1.54 0.00 0.40 1.16 1.98 0.64 0.45 0.32 1.53 0.97 0.81 1.02 0.00 0.00 0.88 1.06 0.00 K jcn_only_AD att-ORFA,att-ORFB,RI_chr3R_16380642_16382206 chr3R - chr3R_16380642_16383128 chr3R_16380642_16382206 chr3R_16380542_16380641;chr3R_16383129_16383136 5.71 NA 4.00 10.34 NA NA 10.81 5.71 9.09 3.57 0.00 14.29 NA NA NA 3.45 NA NA NA 10.42 10.00 3.57 3.70 3.45 NA NA 18.18 NA 12.90 3.85 0.00 0.00 2.33 6.06 12.50 12.50 7.14 NA 2.63 1.89 3.45 20.00 NA NA 11.11 6.90 5.88 0.00 7.41 5.00 6.25 NA 10.34 NA 0.00 NA 1.89 2.99 K intron_retention FKBP59,CG4537 chr2L + chr2L_9889770_9889876 chr2L_9889769_9889770;chr2L_9889876_9889877 chr2L_9889632_9889769;chr2L_9889877_9890155 16.80 13.98 16.80 48.15 16.16 23.23 39.26 25.68 17.57 14.29 23.94 22.95 20.95 24.49 20.47 20.00 20.43 21.74 22.12 19.43 22.92 9.26 20.00 16.42 23.53 40.26 27.91 14.81 20.45 11.48 26.00 16.05 13.73 26.47 16.13 4.11 8.20 9.64 15.93 9.36 28.00 23.97 25.27 8.55 13.51 14.05 13.54 11.67 22.02 14.29 9.82 14.61 10.62 11.93 25.00 12.41 13.96 13.94 K intron_retention RI_chr3L_707623_707678,CkIIalpha-i3,CG13896,RI_chr3L_711692_711744 chr3L - chr3L_709284_709332 chr3L_709283_709284;chr3L_709332_709333 chr3L_709246_709283;chr3L_709333_709401 0.00 0.00 0.00 9.23 0.00 0.00 1.41 2.70 1.08 0.00 0.00 8.51 0.00 4.17 0.00 0.00 0.00 0.00 0.00 7.75 0.00 1.68 4.00 0.00 0.00 3.70 4.17 NA 5.71 0.00 0.00 6.90 0.00 3.64 0.00 3.12 0.00 NA 0.00 0.00 0.00 3.39 0.00 0.00 0.00 4.17 0.00 8.06 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 4.55 1.71 K intron_retention CG7757 chr3L + chr3L_19903529_19903601 chr3L_19903528_19903529;chr3L_19903601_19903602 chr3L_19903403_19903528;chr3L_19903602_19904619 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 88.89 100.00 100.00 93.75 90.91 100.00 100.00 100.00 100.00 NA 96.30 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 96.55 92.86 100.00 100.00 100.00 93.33 100.00 100.00 K jcn_only_AD CG10107,CG10103 chr3L - chr3L_6744544_6745259 chr3L_6744544_6745244 chr3L_6744453_6744543;chr3L_6745260_6745858 84.00 65.38 NA 83.33 NA NA 72.00 75.86 86.49 NA NA 89.47 NA NA NA 71.43 NA NA 75.00 83.78 NA 77.14 80.95 73.08 84.00 NA 83.33 88.00 NA 82.14 89.09 NA NA 80.49 NA NA 90.00 90.91 73.53 94.12 NA 90.00 75.00 86.21 NA 87.50 86.96 NA 90.91 NA 93.62 95.00 NA NA 86.36 NA NA NA K cassette Cf2 chr2L - chr2L_4879197_4881214 chr2L_4879197_4880293;chr2L_4880473_4881214 chr2L_4880294_4880472 chr2L_4878850_4879196;chr2L_4881215_4882365 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 87.50 100.00 100.00 100.00 100.00 91.67 100.00 100.00 90.00 100.00 100.00 90.91 100.00 100.00 N intron_retention Aldolase,I_chr3R_22083764_22086684 chr3R - chr3R_22082389_22082654 chr3R_22082388_22082389;chr3R_22082654_22082655 chr3R_22082368_22082388;chr3R_22082655_22082854 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 NA NA 100.00 80.43 100.00 100.00 100.00 NA 65.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 30.77 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 NA K intron_retention Tango5,noncoding_22970,I_chrX_10659836_10661185 chrX - chrX_10656236_10658202 chrX_10656235_10656236;chrX_10658202_10658203 chrX_10655948_10656235;chrX_10658203_10658269 97.94 95.74 97.87 93.33 89.36 96.77 91.03 94.32 97.90 97.33 91.30 96.55 96.97 97.50 93.22 100.00 100.00 92.31 90.24 93.38 89.36 98.69 98.53 98.48 100.00 95.00 100.00 99.07 98.58 98.47 100.00 98.82 99.43 97.94 98.86 99.07 98.44 100.00 96.24 97.04 99.10 95.89 93.75 98.94 97.39 98.63 100.00 98.45 96.46 96.00 98.53 98.53 100.00 98.70 92.86 98.88 96.59 100.00 K alternative_donor Ilp6,RI_chrX_2226173_2226308,I_chrX_2226173_2226571 chrX - chrX_2226173_2226376;chrX_2226173_2227352;chrX_2226173_2226308 chrX_2226173_2226571 chrX_2226073_2226172;chrX_2227353_2227719 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N mutually_exclusive Ac76E,I_chr3L_19966672_19966735 chr3L + chr3L_19959557_19962181,chr3L_19962341_19963959 chr3L_19959557_19959833,chr3L_19959962_19963959 chr3L_19962182_19962340 chr3L_19959834_19959961 chr3L_19959464_19959556;chr3L_19963960_19964294 12.50 NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N multi_cassette CG12065,CE_chrX_8469528_8477573 chrX + chrX_8478609_8481290 chrX_8478609_8479842;chrX_8479952_8480018;chrX_8480279_8481290 chrX_8479843_8479951;chrX_8480019_8480278 chrX_8478489_8478608;chrX_8481291_8481558 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Hcf,I_chr4_391984_392875 chr4 + chr4_383761_384119 chr4_383760_383761;chr4_384119_384120 chr4_383711_383760;chr4_384120_384265 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA RN-tre chr2R - chr2R_9877474_9878070 chr2R_9877492_9878070 chr2R_9878071_9878197;chr2R_9877190_9877473 99.12 100.00 98.72 100.00 95.12 100.00 89.29 98.99 98.08 98.18 96.88 99.12 100.00 98.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.73 99.00 100.00 100.00 94.12 100.00 100.00 98.12 97.56 99.36 100.00 99.10 98.06 98.91 98.68 100.00 100.00 98.21 100.00 99.03 100.00 100.00 100.00 98.28 99.06 98.18 98.77 97.90 100.00 98.94 100.00 100.00 100.00 94.57 98.72 100.00 97.67 K jcn_only_AA Thd1,I_chr4_572026_572616,RI_chr4_574364_578068 chr4 - chr4_572007_572616 chr4_572026_572616 chr4_572617_572665;chr4_571926_572006 2.09 1.92 0.00 4.62 4.00 1.39 0.00 0.00 1.22 5.88 6.12 2.70 2.27 3.39 1.33 2.52 0.00 0.00 0.85 0.82 1.92 4.76 0.00 0.00 5.56 2.78 0.00 5.26 0.00 6.90 2.50 4.55 6.98 2.41 2.33 2.27 6.06 0.00 0.00 1.45 NA 2.27 1.37 0.00 NA 3.23 NA 3.64 2.86 0.00 3.92 0.00 NA NA 0.96 0.00 0.00 4.00 K intron_retention alpha-Spec chr3L - chr3L_1783683_1784502 chr3L_1783682_1783683;chr3L_1784502_1784503 chr3L_1781759_1783682;chr3L_1784503_1784534 44.16 NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA 35.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RpL35,I_chrX_5567168_5567220 chrX + chrX_5567168_5567249 chrX_5567167_5567168;chrX_5567249_5567250 chrX_5567068_5567167;chrX_5567250_5567320 0.09 0.07 0.09 0.08 0.09 0.04 0.06 0.08 0.12 0.08 0.15 0.09 0.06 0.14 0.08 0.12 0.14 0.09 0.13 0.10 0.07 0.22 0.06 0.09 0.10 0.09 0.15 0.46 0.25 0.05 0.06 0.07 0.08 0.10 0.08 0.04 0.10 0.09 0.08 0.12 0.03 0.12 0.09 0.06 0.08 0.07 0.06 0.13 0.22 0.12 0.08 0.09 0.07 0.07 0.12 0.05 0.10 0.08 K alternative_donor eIF-2beta,RI_chr3L_12519486_12519541 chr3L - chr3L_12519486_12519688;chr3L_12519486_12519596;chr3L_12519486_12519541 chr3L_12519486_12519590 chr3L_12519386_12519485;chr3L_12519689_12519829 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.25 0.00 0.00 0.31 0.00 0.00 0.00 0.57 0.31 1.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.84 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.75 0.00 0.39 0.00 0.47 0.00 0.00 0.00 K jcn_only_AA Syx7,I_chr3L_21439901_21439962 chr3L + chr3L_21439124_21439297 chr3L_21439124_21439260 chr3L_21439033_21439123;chr3L_21439298_21439475 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG42507,Trl,I_chr3L_14745733_14745798,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14744876_14746433;chr3L_14744876_14745798 chr3L_14744876_14746310 chr3L_14744367_14744875;chr3L_14746434_14746571 36.33 32.14 41.12 39.86 42.05 41.05 39.77 41.38 38.42 31.82 43.18 42.61 41.35 31.58 48.28 41.84 41.43 48.60 37.80 44.70 45.68 38.28 35.10 19.75 29.01 36.00 33.56 38.26 35.00 31.36 42.55 37.82 30.15 33.75 28.26 30.94 36.33 34.71 38.40 46.05 34.66 34.84 38.57 36.76 32.59 43.43 36.31 34.44 38.65 30.65 29.70 33.33 31.95 28.49 43.20 34.62 35.71 33.76 K alternative_acceptor CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_157794_157864 chr4_157794_157848 chr4_157699_157793;chr4_157865_157958 100.00 100.00 96.77 100.00 100.00 93.33 98.63 100.00 98.78 90.00 100.00 98.68 96.97 97.50 97.22 98.98 97.22 100.00 98.15 98.48 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 98.15 NA 100.00 98.65 95.45 100.00 92.86 100.00 100.00 96.30 100.00 100.00 100.00 100.00 NA 100.00 100.00 95.65 98.78 100.00 100.00 100.00 87.50 NA 100.00 100.00 87.50 100.00 K alternative_acceptor CG34449,RI_chrX_9232665_9233022,RI_chrX_9249209_9250033,RI_chrX_9249212_9250033,RI_chrX_9249212_9250244 chrX - chrX_9232467_9232545 chrX_9232482_9232545 chrX_9232546_9232664;chrX_9232324_9232466 52.63 47.22 57.14 57.69 55.56 42.11 48.48 47.06 49.12 62.50 41.18 54.17 66.67 50.00 50.00 57.89 52.00 53.33 46.88 53.33 38.10 59.62 48.98 57.45 54.84 60.00 41.67 66.67 53.33 57.45 38.46 43.75 45.90 43.59 50.00 65.52 49.33 66.67 50.98 52.63 52.94 51.56 42.86 50.00 59.09 57.14 57.14 70.97 46.67 56.67 55.26 50.00 51.85 52.63 55.56 51.85 41.94 53.85 K alternative_last_exon Spec2,noncoding_14812,CG2911 chr3R - chr3R_1443372_1449496 chr3R_1448411_1449496 chr3R_1437792_1443371 chr3R_1447834_1448410 chr3R_1449497_1449802 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD I_chr3L_7374787_7375310,smid,I_chr3L_7375166_7375310,I_chr3L_7375435_7375508 chr3L + chr3L_7375112_7375310;chr3L_7375166_7375310 chr3L_7375255_7375310 chr3L_7375311_7375410;chr3L_7375066_7375111 1.75 4.62 0.00 2.82 1.79 0.00 2.33 1.67 0.81 1.69 8.57 2.21 1.54 7.25 0.00 1.50 0.00 1.23 0.00 2.04 4.35 1.89 0.00 3.41 1.75 4.55 0.00 2.86 3.39 0.00 0.00 3.57 0.00 1.87 0.00 3.57 0.71 5.80 0.00 2.10 4.55 3.00 0.00 2.07 0.00 1.41 1.16 4.26 0.83 4.76 1.05 2.70 1.82 0.00 1.41 0.00 3.85 2.53 K cassette KCNQ,I_chr2R_6034329_6034563,I_chr2R_6039928_6040408 chr2R - chr2R_6035658_6036852 chr2R_6035658_6036137;chr2R_6036600_6036852 chr2R_6036138_6036599 chr2R_6035587_6035657;chr2R_6036853_6036858 76.39 NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 66.67 80.00 NA NA NA NA 75.00 NA NA 100.00 50.00 NA NA NA NA NA NA NA NA 77.78 K cassette lea,CE_chr2L_1382311_1420311,I_chr2L_1394759_1397061,RI_chr2L_1404849_1419903 chr2L - chr2L_1394759_1397061 chr2L_1394759_1395902;chr2L_1396006_1397061 chr2L_1395903_1396005 chr2L_1394659_1394758;chr2L_1397062_1397105 100.00 100.00 NA 100.00 NA NA NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 NA 91.67 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 N jcn_only_AD CG1115,F_chr3R_1052705_1053045 chr3R + chr3R_1052705_1053045;chr3R_1052718_1053045 chr3R_1052701_1053045 chr3R_1053046_1053145;chr3R_1052605_1052700 74.19 70.15 100.00 72.92 100.00 NA 72.86 75.86 71.25 62.07 NA 68.75 96.15 63.64 100.00 63.16 43.48 100.00 100.00 67.21 100.00 100.00 70.77 77.78 100.00 100.00 70.31 100.00 100.00 100.00 97.06 100.00 100.00 72.41 57.89 100.00 74.29 68.00 74.14 71.43 100.00 73.91 96.43 72.06 100.00 76.47 68.12 NA 63.41 65.00 67.57 69.44 71.19 67.95 100.00 74.24 72.90 100.00 N alternative_acceptor Karl,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11682370_11682812 chrX_11682370_11682803 chrX_11682363_11682369;chrX_11682813_11683136 53.33 41.67 NA 100.00 NA NA 55.00 50.00 100.00 NA 38.89 100.00 20.00 53.85 53.33 56.25 NA NA NA 45.45 35.71 NA NA NA NA 41.67 NA NA NA NA 100.00 NA NA 60.00 100.00 NA NA NA NA NA NA 50.00 36.36 NA NA NA NA NA 58.33 NA 45.00 NA NA NA 41.67 NA 100.00 NA K intron_retention shot,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9754138_9754206 chr2R_9754137_9754138;chr2R_9754206_9754207 chr2R_9753954_9754137;chr2R_9754207_9754480 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.68 2.08 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9005,I_chr2R_7511406_7511468 chr2R - chr2R_7511408_7511468 chr2R_7511407_7511408;chr2R_7511468_7511469 chr2R_7510036_7511407;chr2R_7511469_7511568 0.00 NA 0.00 22.22 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA 0.00 NA 0.00 NA 25.00 0.00 NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention Taf12,RI_chr3R_7504595_7505288,I_chr3R_7504949_7505288 chr3R - chr3R_7504595_7504665 chr3R_7504594_7504595;chr3R_7504665_7504666 chr3R_7504495_7504594;chr3R_7504666_7504906 3.92 2.90 4.88 3.47 0.00 1.49 5.63 4.17 3.33 1.89 3.28 3.12 5.45 3.70 3.03 3.85 4.55 8.93 3.92 3.14 6.90 4.88 4.00 6.12 9.43 4.23 9.17 11.27 7.22 2.86 5.13 2.47 0.00 3.51 7.84 7.14 4.58 4.44 2.26 4.20 7.78 5.45 3.85 3.37 3.65 4.80 5.26 3.19 2.88 3.45 2.44 1.82 4.94 1.16 5.95 5.98 2.80 0.76 K alternative_acceptor Imp,I_chrX_10699490_10700695,RI_chrX_10699665_10700501,RI_chrX_10699665_10700695 chrX - chrX_10699503_10700695 chrX_10699665_10700695 chrX_10700696_10700795;chrX_10699299_10699502 84.62 NA 100.00 62.50 NA NA 100.00 84.62 75.00 NA 80.00 63.64 87.50 63.64 50.00 80.00 71.43 80.00 100.00 100.00 NA 91.67 NA NA NA NA NA NA 100.00 100.00 87.50 NA 93.33 83.33 NA NA NA NA NA NA NA 83.33 66.67 NA NA NA NA 100.00 75.00 NA NA NA NA NA 100.00 NA NA 100.00 K intron_retention Mmp1,I_chr2R_20564123_20565214,I_chr2R_20569965_20572193 chr2R - chr2R_20569965_20574525 chr2R_20569964_20569965;chr2R_20574525_20574526 chr2R_20569865_20569964;chr2R_20574526_20574574 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 21.43 0.00 NA NA NA NA 35.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K multi_cassette sxc,RI_chr2R_1203985_1204044,I_chr2R_1203985_1205289,I_chr2R_1208121_1213310,I_chr2R_1213177_1213308 chr2R + chr2R_1203985_1213308 chr2R_1203985_1207512;chr2R_1207697_1207752;chr2R_1207822_1207923;chr2R_1208121_1213308 chr2R_1207513_1207696;chr2R_1207753_1207821;chr2R_1207924_1208120 chr2R_1203885_1203984;chr2R_1213309_1213408 100.00 97.62 100.00 98.59 100.00 97.30 100.00 98.88 100.00 100.00 100.00 98.95 100.00 100.00 98.00 99.04 100.00 100.00 100.00 100.00 95.83 100.00 94.64 100.00 100.00 100.00 100.00 94.12 96.77 100.00 100.00 100.00 97.50 98.98 100.00 97.30 100.00 96.55 96.43 100.00 94.44 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 95.00 91.67 98.53 100.00 100.00 97.56 K intron_retention CG7766,I_chrX_8993495_8994545,I_chrX_8991338_8991387 chrX - chrX_8994691_8995128 chrX_8994690_8994691;chrX_8995128_8995129 chrX_8994546_8994690;chrX_8995129_8995452 39.64 25.00 37.50 45.00 45.45 46.15 62.50 50.00 50.00 NA NA 48.48 NA 56.25 46.67 56.25 40.00 33.33 44.44 45.71 NA NA 23.08 15.00 60.00 66.67 35.00 NA 34.62 NA 30.77 27.27 22.22 42.86 43.75 NA 25.00 16.67 NA 40.00 NA 40.00 NA 23.08 NA 10.53 31.25 30.00 39.29 NA 31.82 NA NA NA 47.37 NA 18.75 10.00 K jcn_only_AD noncoding_21259,REI_chrX_828715_831973,TRAM,I_chrX_829418_830362,I_chrX_829743_831973 chrX + chrX_829743_830362 chrX_829872_830362 chrX_830363_830462;chrX_829643_829742 2.44 3.12 1.18 2.94 4.82 1.20 1.94 3.23 4.04 3.57 5.88 0.56 2.70 1.35 2.88 0.00 0.00 2.50 3.09 3.85 1.43 1.94 0.85 0.76 1.72 0.00 2.44 2.04 6.56 4.55 4.24 0.00 1.96 2.50 3.37 2.99 4.51 4.30 0.86 0.75 7.14 2.19 4.48 2.59 3.57 2.94 3.90 0.00 0.55 1.01 3.60 0.00 0.91 0.00 0.79 4.40 2.33 1.69 K intron_retention Eb1,RI_chr2R_2640290_2642206,I_chr2R_2640494_2642206,I_chr2R_2641187_2642206,RI_chr2R_2641944_2642025,I_chr2R_2641954_2642206,I_chr2R_2642491_2642549 chr2R + chr2R_2640494_2642206 chr2R_2640493_2640494;chr2R_2642206_2642207 chr2R_2640394_2640493;chr2R_2642207_2642306 76.39 NA 60.00 42.11 NA NA 69.23 66.67 87.50 NA 100.00 83.33 75.00 NA NA 80.00 NA NA NA 66.67 NA 47.73 73.33 80.00 88.89 NA 83.33 66.67 NA NA 75.00 NA 43.75 60.00 NA 61.54 78.57 81.82 85.71 58.82 NA 61.54 NA 56.25 77.78 100.00 NA 66.67 80.00 80.00 78.57 81.82 NA NA 80.00 NA NA NA K intron_retention C3G chrX - chrX_6677566_6677642 chrX_6677565_6677566;chrX_6677642_6677643 chrX_6676996_6677565;chrX_6677643_6677733 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chr3L_19994894_19994949,CG7668,RI_chr3L_19995983_19996407 chr3L + chr3L_19997464_19997516 chr3L_19997463_19997464;chr3L_19997516_19997517 chr3L_19997380_19997463;chr3L_19997517_19997583 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 3.08 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8142 chrX - chrX_17738470_17738545 chrX_17738469_17738470;chrX_17738545_17738546 chrX_17737602_17738469;chrX_17738546_17738789 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 1.72 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD mbc,I_chr3R_19615584_19615649,I_chr3R_19625220_19625288 chr3R + chr3R_19608111_19615649 chr3R_19615584_19615649 chr3R_19615650_19615749;chr3R_19607533_19608110 3.45 7.32 0.00 1.90 0.00 3.45 3.67 0.83 3.82 8.70 0.00 0.85 1.32 4.29 1.79 2.83 4.29 6.00 2.70 8.76 2.27 5.88 4.65 4.00 3.51 1.69 15.87 NA 10.81 2.13 0.00 NA 4.44 1.01 5.41 0.00 9.33 2.78 5.97 3.26 4.00 1.63 0.00 8.62 NA 0.00 8.70 0.00 1.64 9.38 6.67 9.09 NA NA 3.30 4.17 NA 0.00 K alternative_donor CG33298 chr2L + chr2L_9496256_9503592;chr2L_9495657_9503592 chr2L_9495712_9503592 chr2L_9503593_9504813;chr2L_9495488_9495656 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 NA 0.00 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 20.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 16.67 0.00 0.00 0.00 40.00 33.33 25.00 20.00 0.00 0.00 0.00 0.00 NA 25.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 K intron_retention CG10999 chr3R + chr3R_1643790_1643873 chr3R_1643789_1643790;chr3R_1643873_1643874 chr3R_1643238_1643789;chr3R_1643874_1643909 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Psa,I_chr3L_1518053_1518213 chr3L + chr3L_1517957_1518213 chr3L_1517956_1517957;chr3L_1518213_1518214 chr3L_1517953_1517956;chr3L_1518214_1518313 96.00 95.00 96.15 93.33 94.74 95.24 100.00 92.59 97.50 100.00 93.75 100.00 100.00 100.00 96.30 97.83 95.00 94.74 96.55 95.92 94.44 95.83 96.67 92.59 100.00 95.45 100.00 96.00 93.75 100.00 97.06 95.24 96.77 97.50 94.44 95.24 86.36 94.44 95.83 91.94 96.43 95.56 94.74 97.22 95.45 96.77 86.36 93.33 100.00 100.00 97.06 96.00 85.71 100.00 100.00 100.00 94.12 100.00 K cassette Vps35,RI_chr2R_18073600_18073666,I_chr2R_18073728_18074021,RI_chr2R_18074210_18074272 chr2R + chr2R_18073600_18074021 chr2R_18073600_18073666;chr2R_18073728_18074021 chr2R_18073667_18073727 chr2R_18073511_18073599;chr2R_18074022_18074121 5.56 7.14 NA 0.00 7.69 NA 12.50 3.45 3.23 4.17 5.56 15.79 0.00 6.25 0.00 NA NA 6.67 4.35 0.00 NA 14.29 6.67 4.35 NA NA 6.67 7.14 NA 6.67 3.85 NA NA 5.56 4.35 5.56 5.88 4.76 4.35 5.71 NA 5.71 6.67 5.00 NA NA 5.26 NA 5.71 0.00 6.25 6.67 10.53 0.00 4.00 11.76 4.76 NA K intron_retention Actn,I_chrX_1922061_1924247,I_chrX_1922784_1923807,I_chrX_1922784_1923873 chrX - chrX_1922784_1924247 chrX_1922783_1922784;chrX_1924247_1924248 chrX_1922698_1922783;chrX_1924248_1924347 3.92 4.88 2.70 0.00 0.00 6.67 50.00 5.77 8.20 0.00 0.00 10.20 15.00 0.00 5.00 10.71 4.35 0.00 5.71 4.00 8.70 6.25 2.56 2.17 6.90 2.94 0.00 NA 8.00 0.00 6.90 0.00 0.00 5.88 0.00 0.00 2.33 0.00 5.26 7.55 0.00 2.00 19.05 8.00 3.23 4.35 0.00 5.26 7.02 4.44 1.67 0.00 3.45 0.00 6.25 5.71 3.85 0.00 K intron_retention CG33981,fab1 chr2R - chr2R_13663602_13663662 chr2R_13663601_13663602;chr2R_13663662_13663663 chr2R_13663439_13663601;chr2R_13663663_13665657 0.00 0.00 0.00 3.57 0.00 0.00 0.00 5.00 0.00 0.00 0.00 2.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 1.03 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Pect,I_chr2L_13207997_13208109,E_chr2L_13208285_13210076 chr2L + chr2L_13208778_13209492;chr2L_13208778_13209501;chr2L_13208778_13209471 chr2L_13208778_13209435 chr2L_13208665_13208777;chr2L_13209502_13209599 18.87 17.36 16.55 43.60 25.29 20.87 12.16 20.96 22.61 17.33 13.91 21.49 34.71 20.30 20.57 17.79 27.55 14.42 23.62 18.71 18.37 19.63 18.18 18.87 22.58 24.37 17.87 24.47 23.61 18.85 22.69 18.42 20.39 18.27 19.49 10.89 16.03 19.30 16.67 17.44 23.33 18.40 21.90 19.58 16.87 16.28 19.35 15.79 19.91 19.82 22.00 20.47 12.50 15.04 16.34 17.16 15.75 16.67 K jcn_only_AD hts,I_chr2R_15311185_15312327,I_chr2R_15311303_15312026 chr2R - chr2R_15298777_15306061 chr2R_15298777_15298865 chr2R_15298665_15298776;chr2R_15306062_15306110 1.04 0.00 0.00 1.39 0.00 0.00 1.25 3.10 0.53 0.00 0.00 1.35 1.61 0.00 0.00 1.11 2.13 1.89 0.00 0.97 2.50 0.00 0.00 8.57 NA 0.00 3.77 NA NA 0.00 3.03 NA 1.92 0.86 0.00 4.76 6.38 NA 2.56 5.00 4.55 0.00 2.00 6.45 0.00 3.92 0.00 0.00 0.65 4.35 1.69 5.56 0.00 NA 0.00 0.00 NA 2.33 K intron_retention CG32579,RI_chrX_16218635_16218688,I_chrX_16218930_16219009,I_chrX_16218930_16219644 chrX + chrX_16218635_16218709 chrX_16218634_16218635;chrX_16218709_16218710 chrX_16218535_16218634;chrX_16218710_16218788 0.00 0.00 NA 9.09 NA 0.00 10.34 11.11 0.00 NA NA 2.70 0.00 NA 0.00 0.00 NA 4.76 4.35 0.00 0.00 21.43 0.00 0.00 NA 0.00 0.00 4.35 0.00 0.00 6.45 0.00 0.00 5.41 0.00 NA 0.00 0.00 2.50 0.00 3.45 0.00 NA 5.00 0.00 0.00 NA 0.00 0.00 0.00 9.38 0.00 NA NA 0.00 0.00 0.00 0.00 K intron_retention MtnA,I_chr3R_5609682_5609889,I_chr3R_5615604_5615859,I_chr3R_5615807_5615858,RI_chr3R_5616467_5616560 chr3R - chr3R_5609441_5609501 chr3R_5609440_5609441;chr3R_5609501_5609502 chr3R_5609328_5609440;chr3R_5609502_5609681 93.75 NA NA 100.00 NA NA 90.91 93.33 100.00 NA 93.75 100.00 NA 100.00 100.00 NA 88.89 93.75 90.91 92.86 90.91 NA NA NA NA NA NA NA NA NA 90.91 NA NA 90.91 NA NA NA NA NA NA NA 91.67 NA NA NA 100.00 NA NA 95.00 NA NA NA NA NA 100.00 NA 100.00 NA K intron_retention CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8184851_8186116 chr2L_8184850_8184851;chr2L_8186116_8186117 chr2L_8184815_8184850;chr2L_8186117_8186197 16.80 10.26 11.11 15.00 10.71 21.62 31.75 17.57 14.29 15.79 11.11 19.48 23.53 20.00 19.64 21.74 20.00 26.09 11.32 16.92 20.00 30.30 10.14 15.56 17.50 12.77 19.05 21.74 22.86 18.92 21.21 NA 9.43 20.31 8.82 27.78 11.86 13.73 13.70 18.60 9.09 13.54 7.69 21.31 NA 13.04 8.00 20.59 17.44 12.00 19.05 16.67 14.29 NA 16.28 3.85 19.05 7.14 K intron_retention Taf1 chr3R + chr3R_2480804_2480930 chr3R_2480803_2480804;chr3R_2480930_2480931 chr3R_2480778_2480803;chr3R_2480931_2481770 10.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Fer1HCH,I_chr3R_26212319_26213496,I_chr3R_26213132_26213185 chr3R - chr3R_26213365_26213496 chr3R_26213364_26213365;chr3R_26213496_26213497 chr3R_26213186_26213364;chr3R_26213497_26213534 95.77 95.45 96.34 97.50 97.14 95.45 96.42 94.89 97.84 88.89 94.94 94.44 95.77 95.96 94.96 92.25 98.20 92.50 94.77 95.26 97.40 92.08 94.03 97.28 95.10 97.31 98.68 97.88 99.06 95.65 90.48 98.33 97.73 94.42 93.67 97.26 91.30 96.97 93.97 95.83 98.33 96.12 96.26 96.12 94.55 96.33 96.81 93.33 90.05 94.44 98.06 94.74 94.92 98.39 95.80 98.88 95.30 94.34 K jcn_only_AA CG10981 chr3R + chr3R_1650698_1650778;chr3R_1650698_1650757 chr3R_1650698_1650754 chr3R_1650443_1650697;chr3R_1650779_1651166 35.14 48.28 13.79 37.50 NA 26.92 35.14 29.31 40.35 NA NA 30.91 33.33 37.50 56.67 31.67 17.39 45.00 20.00 38.04 NA 41.67 30.95 30.77 51.85 37.93 37.74 NA NA 47.83 40.74 50.00 40.00 28.57 35.48 34.48 NA 29.63 26.47 25.71 NA 31.03 NA NA NA 37.50 38.71 75.00 44.12 24.32 26.32 NA 18.92 31.25 36.36 33.33 23.81 53.33 K jcn_only_AD phtf,I_chr2R_2629598_2630209 chr2R + chr2R_2631045_2631097 chr2R_2631050_2631097 chr2R_2631098_2632041;chr2R_2630700_2631044 92.38 93.94 NA 96.77 100.00 NA 91.89 92.86 94.00 93.10 NA 88.00 100.00 100.00 93.10 80.65 NA 95.83 95.24 90.38 95.83 89.47 90.48 95.00 80.77 90.00 93.75 90.00 NA 90.00 82.86 NA 92.11 92.68 NA 93.55 92.65 100.00 87.88 88.64 NA 91.18 NA 93.94 93.10 76.00 NA 93.18 87.76 79.31 93.02 91.30 90.48 NA 88.24 88.46 100.00 90.24 K intron_retention CG8908,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16154425_16154473 chr2R_16154424_16154425;chr2R_16154473_16154474 chr2R_16153983_16154424;chr2R_16154474_16155026 35.71 NA NA NA NA NA 30.00 NA 35.71 NA NA NA NA NA NA 36.36 NA NA NA 50.00 NA 42.31 36.84 NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA 35.71 26.92 NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CkIIbeta,I_chrX_11686847_11687475,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11687025_11687475 chrX_11687024_11687025;chrX_11687475_11687476 chrX_11687005_11687024;chrX_11687476_11687551 75.96 72.22 70.59 63.64 84.62 64.29 80.95 61.29 73.58 87.50 92.31 64.86 57.14 80.00 75.00 96.30 71.43 92.31 76.92 63.16 83.33 78.57 70.00 66.67 NA 83.33 70.00 100.00 88.89 80.95 80.95 90.91 94.12 74.07 81.82 88.89 92.31 NA NA 87.50 93.33 75.00 73.33 52.38 NA 70.00 77.78 78.95 70.59 72.73 68.18 78.57 66.67 NA 61.29 90.91 62.50 74.19 K cassette CG30118,I_chr2R_14320281_14325712,I_chr2R_14325118_14325712 chr2R - chr2R_14320281_14325712 chr2R_14320281_14325079;chr2R_14325118_14325712 chr2R_14325080_14325117 chr2R_14320181_14320280;chr2R_14325713_14325780 91.67 100.00 91.67 94.12 88.89 90.00 69.23 100.00 95.00 NA NA 100.00 NA NA 91.67 92.31 90.00 100.00 100.00 86.67 100.00 78.57 91.67 92.31 85.71 85.71 100.00 83.33 NA 88.89 84.21 NA 91.67 100.00 NA 100.00 92.86 77.78 90.00 93.33 88.89 93.75 100.00 75.00 91.67 92.31 90.91 90.91 86.96 84.62 90.91 100.00 NA 87.50 90.00 100.00 90.00 100.00 K intron_retention CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4840474 chr3R_4839214_4839215;chr3R_4840474_4840475 chr3R_4839038_4839214;chr3R_4840475_4840519 7.04 8.33 28.57 7.41 NA 6.67 0.00 3.45 13.21 20.00 13.04 12.50 NA 15.00 5.88 13.51 15.38 0.00 5.26 10.81 0.00 9.26 7.69 NA NA 5.56 3.57 9.09 8.70 12.90 12.00 NA 5.41 25.00 0.00 15.38 0.00 7.69 NA 6.06 13.04 8.11 17.65 5.26 0.00 11.11 0.00 3.85 3.23 0.00 15.38 4.35 0.00 NA 4.35 0.00 0.00 4.44 K intron_retention CG8034 chrX - chrX_19176969_19177034 chrX_19176968_19176969;chrX_19177034_19177035 chrX_19176401_19176968;chrX_19177035_19177226 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 3.45 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 2.17 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 K jcn_only_AA RI_chr3L_19787260_19787323,Ir76a,RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19795941_19796001 chr3L_19795941_19795997 chr3L_19795436_19795940;chr3L_19796002_19796481 96.00 NA 95.45 86.96 NA NA 95.00 84.62 96.30 NA 100.00 97.44 NA NA 100.00 95.24 NA NA NA 96.67 NA NA NA 96.55 NA 88.00 NA NA NA 100.00 86.36 100.00 95.24 100.00 NA NA 85.00 NA 96.43 95.38 96.00 97.37 NA 96.30 96.97 91.67 95.00 94.59 97.22 92.59 100.00 NA 100.00 86.36 NA 86.96 97.78 94.55 K jcn_only_AD RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522912_523215;chrX_522912_523414;chrX_522912_523194;chrX_522912_523323;chrX_522912_523389 chrX_522912_523360 chrX_522849_522911;chrX_523415_523436 77.20 73.51 78.03 51.19 72.32 76.53 86.28 59.64 75.43 85.11 73.22 77.20 83.73 77.92 80.36 82.55 80.95 77.00 74.44 71.37 79.77 64.29 92.07 88.34 89.63 88.96 85.12 59.92 83.37 79.72 76.43 59.14 77.03 62.88 81.08 83.38 92.45 90.22 89.89 49.09 75.65 54.32 77.47 58.55 65.91 73.68 85.62 70.67 65.18 83.58 87.43 90.13 72.01 81.43 76.39 81.37 75.74 68.44 K alternative_acceptor mu2,I_chr3L_1945382_1945647 chr3L - chr3L_1945529_1945647;chr3L_1945574_1945647 chr3L_1945592_1945647 chr3L_1945648_1945655;chr3L_1945437_1945528 58.33 40.00 53.33 64.00 66.67 54.55 71.43 66.67 58.06 60.00 58.33 62.50 53.85 45.45 50.00 53.85 72.73 46.67 70.00 59.38 41.67 44.44 58.82 64.71 66.67 62.50 60.00 42.86 50.00 25.00 63.64 28.57 50.00 66.67 75.00 66.67 45.45 54.55 60.00 65.00 66.67 65.00 54.55 55.56 42.86 75.00 60.00 75.00 46.88 46.15 58.33 57.14 44.44 28.57 52.94 71.43 66.67 53.85 K jcn_only_AD vkg,I_chr2L_5027222_5027297,I_chr2L_5027222_5028118 chr2L - chr2L_5027222_5027297;chr2L_5027222_5027351 chr2L_5027222_5028118 chr2L_5027122_5027221;chr2L_5028119_5028218 0.17 0.00 0.00 0.37 1.47 0.00 0.84 0.57 0.17 0.00 0.00 0.28 0.23 0.00 0.35 0.24 0.00 0.00 1.59 0.75 1.08 0.91 0.00 0.00 0.00 2.88 0.51 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.90 0.00 1.02 2.50 1.15 1.37 0.57 0.34 0.78 1.65 0.00 0.75 0.00 0.25 0.00 0.00 0.53 K intron_retention CG8202 chr3R + chr3R_4561166_4561230 chr3R_4561165_4561166;chr3R_4561230_4561231 chr3R_4560897_4561165;chr3R_4561231_4561559 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor RI_chr3L_707623_707678,CkIIalpha-i3,CG13896,RI_chr3L_711692_711744 chr3L - chr3L_711688_711744 chr3L_711692_711744 chr3L_711745_711774;chr3L_711592_711687 41.43 NA NA 36.36 NA NA 37.50 25.00 52.63 NA NA NA 52.94 40.00 NA 58.82 NA 36.36 50.00 70.59 NA NA NA NA NA NA NA NA NA NA 42.86 NA NA 40.00 NA NA NA NA NA NA NA 46.15 NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG34413,RI_chr2R_20769295_20770153,I_chr2R_20771136_20772048,I_chr2R_20773500_20774745 chr2R + chr2R_20769471_20770153;chr2R_20769206_20770153;chr2R_20769295_20770153 chr2R_20769150_20770153 chr2R_20770154_20770253;chr2R_20769141_20769149 89.90 92.22 92.71 93.81 93.50 94.35 88.46 85.98 92.27 96.67 97.50 94.12 94.59 89.13 88.98 83.33 93.64 98.72 96.30 89.93 91.95 92.50 79.52 83.33 87.67 94.62 81.93 86.27 75.00 82.93 89.19 NA 90.00 92.70 76.92 76.92 89.87 84.88 86.73 89.68 NA 92.24 91.46 93.85 86.84 90.32 85.00 82.93 94.36 85.94 82.67 91.67 86.54 80.00 95.83 93.75 87.50 NA K intron_retention Sin chr3L + chr3L_21025022_21025080 chr3L_21025021_21025022;chr3L_21025080_21025081 chr3L_21024903_21025021;chr3L_21025081_21026151 0.00 0.00 0.00 0.00 NA NA 0.00 3.85 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 5.26 0.00 NA 0.00 5.56 NA 5.00 9.52 0.00 14.29 14.29 13.33 NA 19.05 0.00 NA NA NA NA 0.00 3.03 12.50 0.00 NA 0.00 0.00 0.00 NA 8.00 0.00 0.00 4.17 NA 10.00 NA 5.88 NA 0.00 6.25 K jcn_only_AA CG7220,RI_chr2R_6619302_6620085,RI_chr2R_6619302_6623271,RI_chr2R_6619302_6623324,chr2R_6619302_6619942.0,I_chr2R_6620302_6623271,I_chr2R_6622606_6624161,RI_chr2R_6624080_6624161 chr2R + chr2R_6619302_6624161;chr2R_6619302_6620085 chr2R_6619302_6623324 chr2R_6619202_6619301 4.40 1.92 5.08 2.83 2.56 0.00 6.33 4.40 5.66 0.00 4.55 3.33 5.17 1.47 2.86 5.81 8.00 4.17 1.79 3.47 7.50 13.70 6.90 5.45 2.13 7.84 2.20 2.70 2.65 3.37 8.00 7.69 2.91 3.61 7.14 13.33 1.92 2.27 3.28 4.38 4.08 1.63 9.30 6.12 8.18 6.47 5.00 8.60 8.27 7.25 5.71 0.00 3.57 3.12 3.45 9.84 8.24 6.03 K alternative_donor CG12393,CG9135 chr2L + chr2L_6048627_6048693;chr2L_6048635_6048693 chr2L_6048631_6048693 chr2L_6048694_6048702;chr2L_6048512_6048626 63.64 61.11 58.33 56.52 66.67 54.55 61.11 64.00 61.29 NA 50.00 66.67 64.29 70.00 53.33 61.29 53.85 60.00 64.71 58.06 64.71 63.64 70.00 63.64 NA 65.00 64.29 50.00 50.00 62.50 66.67 50.00 63.64 64.00 55.56 63.64 66.67 71.43 63.64 70.00 60.00 66.67 54.55 70.00 66.67 61.54 55.56 69.23 60.87 71.43 68.75 60.00 75.00 66.67 58.82 63.64 68.75 57.14 K alternative_acceptor lkb1 chr3R + chr3R_9502667_9502743 chr3R_9502667_9502737 chr3R_9502444_9502666;chr3R_9502744_9503934 92.31 92.86 91.67 92.86 NA 90.00 100.00 100.00 90.48 NA NA 89.47 NA NA NA 92.31 100.00 NA 90.00 95.00 87.50 83.33 95.24 92.31 100.00 NA 93.33 87.50 93.75 88.89 80.00 100.00 96.00 89.47 92.31 92.31 93.33 90.91 93.33 89.47 86.67 84.21 77.78 92.31 100.00 95.65 92.31 92.00 95.00 90.00 94.44 90.91 87.50 NA 90.00 92.31 83.33 90.00 K jcn_only_AA fon,I_chr2L_19385355_19385669,E_chr2L_19385377_19386086,CE_chr2L_19385715_19386086,I_chr2L_19388570_19389922 chr2L - chr2L_19385355_19385669 chr2L_19385364_19385669 chr2L_19385670_19385704;chr2L_19385277_19385354 100.00 95.45 100.00 100.00 NA 95.45 100.00 100.00 100.00 NA NA 97.83 NA NA NA NA NA NA NA 100.00 NA 97.56 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 96.43 NA 95.83 96.77 NA 100.00 NA 100.00 100.00 95.00 100.00 100.00 98.31 100.00 100.00 NA 100.00 100.00 100.00 95.24 100.00 100.00 K jcn_only_AD CG4293,RI_chrX_423385_423664,I_chrX_423385_423676 chrX - chrX_423564_423676 chrX_423564_423664 chrX_423443_423563;chrX_423677_423764 59.69 70.83 NA NA NA NA NA 75.00 80.00 NA NA 64.29 NA NA NA NA NA NA NA 63.04 NA 34.62 72.00 75.00 NA NA NA 63.64 NA 50.00 NA NA NA NA NA 57.14 NA 48.15 65.79 57.14 NA 53.85 NA NA NA NA NA NA 65.38 NA 50.00 NA 45.45 47.62 NA 39.13 59.38 60.00 N jcn_only_AD Tsp39D chr2L + chr2L_21356513_21356739 chr2L_21356683_21356739 chr2L_21356740_21358273;chr2L_21356104_21356512 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG2004,I_chrX_8608130_8608508,RI_chrX_8608147_8608508,I_chrX_8608169_8608438 chrX - chrX_8608169_8608508;chrX_8608130_8608508;chrX_8608150_8608508 chrX_8608147_8608508 chrX_8608509_8608538;chrX_8608069_8608129 1.74 3.03 0.00 0.00 3.70 0.00 8.86 2.20 2.27 6.25 2.13 0.00 1.45 3.08 1.47 1.74 2.27 1.64 1.37 0.88 1.59 0.00 0.00 4.49 1.75 0.00 4.04 2.44 7.55 0.00 2.56 2.63 6.25 2.02 2.60 0.00 1.47 4.00 1.20 0.94 3.33 2.42 1.79 0.00 1.47 3.26 0.00 3.70 2.48 1.82 0.00 0.00 1.96 0.00 1.10 1.52 1.12 1.52 K alternative_acceptor tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563485_567573;chr3R_563503_567573 chr3R_563461_567573 chr3R_567574_568885;chr3R_563195_563460 28.00 23.33 28.57 8.00 26.67 29.17 44.83 30.43 24.39 6.67 40.91 28.36 16.67 25.71 29.03 17.65 28.00 23.33 21.21 24.29 33.33 22.22 33.33 24.14 25.00 12.50 21.21 25.00 29.63 20.83 13.89 36.36 41.67 30.77 25.00 25.00 28.57 13.64 36.67 31.11 39.13 22.95 33.33 36.00 33.33 21.74 46.67 27.27 30.77 30.43 31.25 21.43 28.57 10.00 13.89 28.00 31.03 37.93 K intron_retention I_chr3L_252776_253313,Tudor-SN,snoRNA:Psi18S-996 chr3L - chr3L_261747_261977 chr3L_261746_261747;chr3L_261977_261978 chr3L_260311_261746;chr3L_261978_262818 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 3.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_716153_716613 chr4_716152_716153;chr4_716613_716614 chr4_716072_716152;chr4_716614_716661 92.86 NA 100.00 90.00 NA 92.86 92.11 97.30 90.24 NA NA 90.91 88.24 95.45 NA 96.55 76.92 NA 92.86 95.24 NA NA 90.91 72.73 NA NA NA NA NA NA 90.91 NA NA 94.12 NA NA NA NA NA 100.00 NA 92.31 93.33 NA NA NA NA NA 100.00 NA 93.33 91.67 NA NA NA NA NA NA K alternative_donor CG4699 chr3R + chr3R_11624133_11624442;chr3R_11624190_11624442;chr3R_11624127_11624442 chr3R_11624200_11624442 chr3R_11624443_11624758;chr3R_11623809_11624126 51.79 46.30 46.30 29.67 28.30 41.67 63.08 52.44 48.15 51.39 54.17 48.94 61.90 54.00 52.11 50.98 50.00 52.50 45.61 52.89 39.53 58.57 43.56 54.32 52.83 53.06 48.24 44.05 50.47 58.12 51.79 50.00 46.37 54.22 53.09 42.86 47.66 52.86 50.43 69.80 53.41 48.72 72.09 51.85 51.30 52.75 62.96 46.23 55.05 46.25 57.89 58.33 50.00 50.00 56.14 47.62 57.45 51.88 K alternative_donor ade2 chr2L - chr2L_6045527_6045920 chr2L_6045527_6045893 chr2L_6044428_6045526;chr2L_6045921_6046003 15.47 11.76 13.43 22.97 12.73 10.91 15.22 16.88 13.11 27.59 9.80 12.69 15.38 12.77 11.59 14.93 13.04 20.97 15.56 14.60 14.00 22.22 30.30 31.82 21.43 11.94 22.73 26.67 33.33 6.90 18.33 20.00 12.90 16.05 16.00 25.00 23.68 20.00 15.79 10.64 22.22 12.34 11.11 15.38 14.29 26.09 27.78 20.45 14.29 36.84 22.22 21.05 13.79 16.67 13.64 NA 15.00 15.15 N alternative_acceptor CG17025,I_chr3R_9289511_9290079 chr3R - chr3R_9284268_9291428 chr3R_9289511_9291428 chr3R_9291429_9291828;chr3R_9284057_9284267 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette DAAM chrX - chrX_1189970_1210107 chrX_1189970_1203891;chrX_1203934_1210107 chrX_1203892_1203933 chrX_1189043_1189969;chrX_1210108_1210194 77.78 80.00 66.67 72.73 NA 85.71 60.00 87.50 76.00 NA 75.00 76.92 71.43 85.71 66.67 77.78 87.50 50.00 77.78 95.45 63.64 77.78 46.15 69.23 NA NA NA NA NA 87.50 90.00 85.71 61.54 78.57 60.00 NA 100.00 NA 72.73 91.67 NA 85.00 85.71 NA NA 85.71 NA 73.33 76.00 NA 85.71 NA NA NA 90.91 NA 72.73 NA K jcn_only_AA iPLA2-VIA chr3L - chr3L_9857200_9857292;chr3L_9856717_9857292 chr3L_9857015_9857292 chr3L_9857293_9857459 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.17 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 1.56 1.68 0.89 0.00 0.00 0.00 3.64 0.00 4.17 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 1.52 2.50 0.00 0.00 0.00 0.00 0.00 K alternative_donor gw,RI_chr4_679135_679703,I_chr4_679135_680299,RI_chr4_679135_680693,I_chr4_679135_681047,I_chr4_679135_681671 chr4 - chr4_679135_680185;chr4_679135_680594;chr4_679135_680546;chr4_679135_680503 chr4_679135_680270 chr4_679035_679134;chr4_680595_680603 33.33 33.33 20.00 13.33 100.00 33.33 17.65 30.43 23.81 NA 40.00 42.86 14.29 33.33 40.00 21.05 33.33 50.00 42.86 36.36 33.33 0.00 20.00 25.00 100.00 75.00 33.33 50.00 NA 60.00 28.57 NA 50.00 38.89 33.33 33.33 0.00 50.00 NA 28.57 NA 38.46 33.33 33.33 NA 33.33 NA 66.67 25.00 NA 33.33 0.00 NA NA 33.33 NA NA NA K alternative_donor CG31855 chr2L + chr2L_13369319_13369385 chr2L_13369324_13369385 chr2L_13369386_13370334;chr2L_13369210_13369318 97.30 100.00 95.00 97.22 100.00 92.86 100.00 96.88 97.44 NA 100.00 97.67 100.00 94.44 95.24 93.22 100.00 100.00 100.00 97.56 90.48 92.86 96.30 100.00 87.50 100.00 100.00 100.00 100.00 91.67 100.00 94.74 100.00 97.30 95.45 100.00 94.44 100.00 96.55 100.00 88.89 97.14 94.74 95.45 100.00 97.30 97.14 90.00 100.00 100.00 100.00 100.00 96.15 96.77 95.24 96.55 97.67 90.00 K alternative_last_exon Asator chr4 - chr4_493304_495078 chr4_494346_495078 chr4_493204_493303 chr4_493454_494345 chr4_495079_495128 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 66.67 100.00 100.00 NA 100.00 100.00 100.00 100.00 85.71 NA 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2813977;chr2R_2814097_2814174;chr2R_2814327_2816013;chr2R_2816342_2816577;chr2R_2816779_2817459;chr2R_2817604_2817753 chr2R_2813978_2814096;chr2R_2814175_2814326;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817460_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention RI_chrX_11473566_11473702,roX2,noncoding_23149,I_chrX_11475074_11475402 chrX + chrX_11473270_11473384 chrX_11473269_11473270;chrX_11473384_11473385 chrX_11473254_11473269;chrX_11473385_11473432 63.64 NA NA NA NA NA 90.00 75.00 68.75 NA NA 63.64 NA NA NA 63.64 NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA 53.85 NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA K cassette CG13551,I_chr2R_19265696_19270137,I_chr2R_19265701_19270570 chr2R - chr2R_19265701_19270570 chr2R_19265701_19270137;chr2R_19270283_19270570 chr2R_19270138_19270282 chr2R_19265601_19265700;chr2R_19270571_19270645 99.13 99.77 97.54 89.72 98.92 99.13 99.43 98.08 97.54 99.52 98.31 98.92 99.23 99.45 98.55 98.51 100.00 99.17 99.42 98.42 99.51 98.04 98.52 99.30 99.67 99.43 98.57 100.00 93.75 98.48 98.63 99.72 99.66 98.47 98.68 98.56 98.88 99.06 99.28 99.22 99.19 98.75 99.39 99.06 99.67 99.84 99.03 99.71 99.81 98.54 98.97 99.24 99.67 99.68 98.50 99.47 99.00 99.60 K alternative_acceptor Arf79F,I_chr3L_22863166_22863946,I_chr3L_22863166_22864419,RI_chr3L_22863251_22863389,RI_chr3L_22863251_22863952,I_chr3L_22863251_22864009,I_chr3L_22863251_22864188,I_chr3L_22863251_22864501,I_chr3L_22863251_22864629,RI_chr3L_22863251_22864763,I_chr3L_22863251_22864866,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22863166_22863946 chr3L_22863251_22863946 chr3L_22863947_22864046;chr3L_22863151_22863165 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.96 99.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.33 100.00 99.56 100.00 100.00 100.00 K alternative_donor CG17159,CG17162,noncoding_25215 chrXHet - chrXHet_69232_75430;chrXHet_69232_75279 chrXHet_69232_75250 chrXHet_69195_69231;chrXHet_75431_75453 73.91 93.33 77.27 66.67 83.33 78.57 62.07 69.70 77.78 58.33 87.50 80.65 85.71 57.89 75.00 76.92 66.67 50.00 82.61 75.00 56.25 80.00 72.22 80.00 69.23 77.27 92.31 75.00 45.45 69.23 85.71 62.50 83.33 72.97 90.00 70.59 72.22 83.33 78.57 59.09 75.00 69.44 60.00 92.31 40.00 50.00 62.50 50.00 73.91 60.00 83.33 78.57 85.71 66.67 68.00 85.71 71.43 70.00 K cassette rgn chr3L + chr3L_21376185_21412706 chr3L_21376185_21404629;chr3L_21404679_21412706 chr3L_21404630_21404678 chr3L_21375636_21376184;chr3L_21412707_21412897 80.00 68.75 100.00 70.00 81.82 71.43 NA 83.33 76.92 62.50 NA 84.62 77.78 71.43 76.47 85.00 85.71 81.82 68.42 84.38 90.00 88.89 NA 76.92 NA 66.67 55.56 NA NA 88.89 84.21 85.71 80.00 75.76 NA 30.00 NA NA 80.00 72.73 66.67 64.10 92.31 83.33 85.71 81.82 71.43 76.67 70.97 85.71 100.00 87.50 NA NA 81.82 62.50 62.50 94.12 K cassette CG16817 chr3R + chr3R_5503809_5504441 chr3R_5503809_5504283;chr3R_5504371_5504441 chr3R_5504284_5504370 chr3R_5503640_5503808;chr3R_5504442_5504698 99.56 99.72 99.74 98.42 99.64 100.00 96.59 99.65 99.60 97.55 100.00 99.44 99.69 99.42 99.29 99.53 100.00 100.00 99.74 99.48 98.43 98.35 98.95 99.35 99.67 99.73 99.06 99.52 99.46 99.52 99.79 99.56 99.42 99.82 100.00 98.55 99.40 99.39 99.80 100.00 99.30 100.00 100.00 99.67 100.00 99.74 99.77 99.48 99.86 98.98 99.50 99.66 98.93 98.87 99.55 100.00 99.71 99.44 K intron_retention CG1416 chr2L + chr2L_21759367_21760479 chr2L_21759366_21759367;chr2L_21760479_21760480 chr2L_21759231_21759366;chr2L_21760480_21760915 0.34 0.37 0.00 1.20 0.89 0.49 0.51 0.00 0.33 0.00 0.00 0.77 0.93 0.00 1.13 0.97 0.00 0.75 0.85 0.68 0.42 0.00 0.57 0.00 0.00 0.00 0.88 0.63 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.51 0.67 0.68 0.00 0.00 0.00 0.66 1.01 0.00 0.00 0.59 0.00 0.00 0.67 0.47 0.72 0.00 0.00 0.58 0.34 0.24 0.34 0.00 K alternative_donor E_chr4_592469_594231,Ephrin,I_chr4_595055_597604,RI_chr4_596272_596341 chr4 + chr4_592737_594238;chr4_592646_594238;chr4_592593_594238;chr4_592469_594238;chr4_592410_594238;chr4_592798_594238 chr4_592490_594238 chr4_594239_594331;chr4_592404_592409 16.67 25.00 0.00 18.18 0.00 16.67 9.09 21.05 16.67 NA 0.00 18.75 42.86 12.50 16.67 18.18 14.29 0.00 11.11 7.69 0.00 0.00 0.00 33.33 33.33 16.67 20.00 NA 0.00 0.00 16.67 NA NA 13.64 33.33 0.00 33.33 NA NA 20.00 NA 21.43 16.67 40.00 NA 50.00 NA 0.00 21.05 NA 28.57 50.00 NA NA 14.29 NA NA NA K alternative_acceptor CG4585,I_chr2R_19752558_19752634 chr2R - chr2R_19751932_19752634 chr2R_19752558_19752634 chr2R_19752635_19752734;chr2R_19750513_19751931 4.44 4.12 2.60 3.36 2.60 5.00 2.53 3.57 2.63 5.71 4.62 5.04 1.82 5.26 5.43 4.08 2.35 4.05 2.13 4.79 2.90 18.52 3.09 3.70 4.44 2.86 6.02 10.00 11.90 6.25 6.17 6.67 7.41 3.33 4.44 5.26 4.69 3.64 4.17 7.79 3.85 4.14 5.88 2.70 6.45 5.48 5.41 26.32 4.10 3.28 3.09 5.00 3.12 4.92 4.60 1.47 3.39 10.53 K cassette CG4452 chr3L + chr3L_9361315_9362000 chr3L_9361315_9361667;chr3L_9361762_9362000 chr3L_9361668_9361761 chr3L_9361201_9361314;chr3L_9362001_9362414 88.89 88.00 91.67 80.85 84.62 96.55 72.00 95.00 95.16 89.29 95.24 91.67 80.00 79.17 88.89 97.50 87.50 96.30 95.24 86.90 88.00 93.85 84.13 82.09 85.00 75.00 82.69 91.18 86.27 86.27 74.29 90.00 85.42 86.00 91.67 93.48 89.74 91.49 89.87 86.89 66.67 95.65 100.00 86.67 92.86 88.57 91.04 94.12 90.20 87.72 92.16 84.00 86.21 90.48 86.21 86.00 89.19 93.02 K intron_retention CG31038,I_chr3R_25702915_25703648,I_chr3R_25705533_25722419,I_chr3R_25727788_25727905 chr3R + chr3R_25702901_25703648 chr3R_25702900_25702901;chr3R_25703648_25703649 chr3R_25702865_25702900;chr3R_25703649_25703748 54.16 NA NA NA NA NA NA 70.00 40.00 NA NA 55.56 NA NA 80.00 50.00 NA NA 70.00 56.25 NA 80.00 60.87 38.46 NA 41.67 NA NA NA NA 53.33 NA 46.15 70.00 55.00 25.00 NA NA 41.67 66.67 NA 60.00 NA 35.71 NA NA NA 60.00 46.15 NA 46.15 50.00 NA NA NA NA NA NA K alternative_acceptor CG5815,CG5880,CG5882 chr3R + chr3R_22938413_22938558 chr3R_22938413_22938552 chr3R_22938313_22938412;chr3R_22938559_22939933 100.00 NA NA 90.91 NA NA NA 100.00 90.91 NA NA 84.62 NA NA NA 100.00 NA NA NA 93.75 NA 87.50 100.00 100.00 NA NA NA 90.91 100.00 NA NA NA NA 100.00 100.00 87.50 88.89 NA 100.00 100.00 NA NA NA 100.00 NA NA 91.67 100.00 100.00 100.00 87.50 NA 100.00 NA 100.00 81.82 100.00 91.67 K intron_retention CG31150,Hmt-1 chr3R - chr3R_11675654_11675710 chr3R_11675653_11675654;chr3R_11675710_11675711 chr3R_11675422_11675653;chr3R_11675711_11675930 0.00 0.00 0.00 0.37 0.00 0.00 0.55 0.66 0.76 0.00 0.55 0.56 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.98 0.00 1.34 1.06 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.93 0.00 0.75 0.23 0.00 0.70 2.05 0.00 0.00 0.53 0.00 0.93 0.95 0.77 0.80 0.69 0.00 0.00 0.85 0.00 0.00 0.00 K multi_cassette CG11266,RI_chr2L_7033019_7033182,RI_chr2L_7033019_7034180,RI_chr2L_7033019_7034764,I_chr2L_7034274_7034764,I_chr2L_7034274_7035406,RI_chr2L_7034911_7035074,I_chr2L_7051093_7051366 chr2L + chr2L_7033019_7035406 chr2L_7033019_7034483;chr2L_7034694_7034764;chr2L_7034911_7035406 chr2L_7034484_7034693;chr2L_7034765_7034910 chr2L_7032919_7033018;chr2L_7035407_7035506 8.61 4.88 14.81 4.65 8.33 10.53 11.76 23.08 10.00 4.44 15.00 20.63 21.74 21.43 10.00 28.57 16.67 3.57 20.83 6.85 10.53 5.63 9.76 6.82 2.22 6.06 10.53 0.00 2.63 2.63 22.58 4.17 1.22 13.51 11.63 NA 3.92 9.09 8.89 7.00 2.44 10.00 21.05 10.81 1.00 3.75 6.82 2.42 15.69 5.56 13.16 5.88 2.22 6.25 20.00 12.82 5.71 3.08 K alternative_donor Adar,I_chrX_1668256_1682696,I_chrX_1674594_1674717 chrX + chrX_1673292_1674094 chrX_1673403_1674094 chrX_1674095_1674277;chrX_1673123_1673291 94.12 92.31 96.00 81.58 95.24 86.36 96.88 100.00 92.45 69.23 94.74 97.56 100.00 92.59 95.45 100.00 96.15 94.12 97.06 95.92 100.00 90.00 90.91 100.00 94.12 95.65 93.10 100.00 63.64 93.75 93.75 88.89 75.00 95.24 93.75 84.21 85.00 100.00 90.48 75.86 100.00 92.31 86.36 100.00 91.67 95.24 100.00 90.48 92.86 94.12 96.15 100.00 92.31 92.31 87.10 94.44 94.12 100.00 K intron_retention CG8735,noncoding_5214 chr2R - chr2R_4485353_4485617 chr2R_4485352_4485353;chr2R_4485617_4485618 chr2R_4485064_4485352;chr2R_4485618_4485794 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 2.44 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 2.70 0.00 K intron_retention tou,I_chr2R_7468394_7468453,RI_chr2R_7474644_7475275,I_chr2R_7479681_7491857,I_chr2R_7504956_7505020 chr2R - chr2R_7469255_7470519 chr2R_7469254_7469255;chr2R_7470519_7470520 chr2R_7469133_7469254;chr2R_7470520_7474530 4.67 4.44 6.06 4.39 3.45 7.41 4.84 7.14 4.38 2.78 4.08 3.47 19.23 6.25 2.41 8.24 5.00 2.74 11.48 4.03 3.77 5.50 3.36 7.96 4.82 1.67 5.26 9.86 3.47 5.63 3.75 2.86 5.13 4.67 4.88 6.42 3.68 4.76 3.57 6.21 6.85 3.03 5.26 5.17 2.94 5.00 4.65 4.00 3.91 4.55 6.48 9.09 4.48 0.00 7.23 3.37 5.45 1.45 K intron_retention CG4420,I_chrX_16335942_16337525 chrX + chrX_16338360_16338422 chrX_16338359_16338360;chrX_16338422_16338423 chrX_16338074_16338359;chrX_16338423_16339400 0.00 0.00 0.00 0.43 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.83 0.00 0.00 1.62 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Spn,I_chr3L_2511764_2512148 chr3L - chr3L_2511764_2512294 chr3L_2511764_2511877;chr3L_2511932_2512294 chr3L_2511878_2511931 chr3L_2511664_2511763;chr3L_2512295_2512472 100.00 92.31 100.00 100.00 100.00 100.00 72.73 100.00 100.00 NA NA 100.00 100.00 100.00 88.89 100.00 NA 100.00 100.00 100.00 NA 90.91 100.00 90.91 NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 90.91 100.00 100.00 100.00 94.12 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 88.89 93.33 92.31 100.00 100.00 100.00 100.00 87.50 NA K intron_retention CG11127,E_chr2R_3351548_3351766 chr2R + chr2R_3351548_3351769 chr2R_3351547_3351548;chr2R_3351769_3351770 chr2R_3351448_3351547;chr2R_3351770_3351866 98.15 98.33 95.00 98.88 100.00 98.53 95.45 93.98 97.14 97.30 97.50 95.87 94.34 100.00 98.70 96.39 98.15 96.77 98.65 94.41 97.92 98.25 96.72 97.22 100.00 98.46 98.92 100.00 98.25 98.18 98.39 100.00 98.13 96.15 100.00 100.00 94.74 96.88 100.00 95.51 100.00 99.25 100.00 98.59 94.59 100.00 95.38 93.20 98.23 93.33 96.94 98.15 100.00 100.00 93.98 96.77 97.70 96.77 K intron_retention CG14435 chrX - chrX_6734468_6735501 chrX_6734467_6734468;chrX_6735501_6735502 chrX_6734397_6734467;chrX_6735502_6735607 0.00 4.35 0.00 0.00 0.00 0.00 2.70 2.38 0.00 0.00 0.00 1.59 0.00 0.00 4.35 3.23 0.00 0.00 0.00 1.16 0.00 3.39 0.00 0.00 3.85 0.00 2.94 0.00 3.33 0.00 0.00 0.00 4.88 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 1.69 0.00 4.55 0.00 2.56 0.00 2.04 0.00 0.00 0.00 6.25 0.00 3.57 6.67 4.35 4.00 0.00 K intron_retention CG11071 chrX - chrX_13748406_13748684 chrX_13748405_13748406;chrX_13748684_13748685 chrX_13745689_13748405;chrX_13748685_13749151 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 1.20 0.00 0.00 1.94 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3018025_3018278 chr2L_3018024_3018025;chr2L_3018278_3018279 chr2L_3017982_3018024;chr2L_3018279_3018287 100.00 93.33 100.00 100.00 100.00 100.00 96.77 100.00 98.21 NA 100.00 97.14 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 88.89 100.00 97.30 100.00 NA 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 97.30 100.00 100.00 100.00 NA NA 100.00 NA 100.00 90.00 K intron_retention UBL3 chrX - chrX_15746577_15747074 chrX_15746576_15746577;chrX_15747074_15747075 chrX_15745618_15746576;chrX_15747075_15747178 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA NA 100.00 NA 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA NA K intron_retention CG11009,I_chr3L_12844823_12845526,I_chr3L_12845441_12845526 chr3L + chr3L_12845378_12845715 chr3L_12845377_12845378;chr3L_12845715_12845716 chr3L_12845344_12845377;chr3L_12845716_12845816 21.37 NA NA 18.18 NA NA NA 22.73 40.00 NA NA 36.00 87.50 NA NA 12.50 NA NA NA 14.81 NA NA 15.38 25.00 NA NA NA 25.00 NA NA 14.29 NA NA 36.36 NA NA NA NA NA NA 5.56 31.82 NA NA NA 9.52 26.67 20.00 30.00 15.00 NA NA NA NA NA NA NA 6.25 K intron_retention CG6236 chr3R - chr3R_11153286_11153351 chr3R_11153285_11153286;chr3R_11153351_11153352 chr3R_11153098_11153285;chr3R_11153352_11153502 0.00 0.00 0.91 4.41 0.00 0.00 2.04 0.00 0.89 0.00 2.25 1.28 0.00 0.00 0.00 0.00 1.03 5.63 0.00 0.00 0.00 3.60 0.00 1.92 0.00 0.00 3.53 1.59 3.92 0.00 9.57 0.00 0.00 0.00 1.35 0.00 0.00 0.00 2.47 0.00 5.56 1.40 0.00 0.00 1.65 2.67 1.89 1.09 1.45 0.00 1.27 2.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG4199,I_chrX_1962457_1964222 chrX - chrX_1965614_1965872;chrX_1965614_1967149;chrX_1965614_1966582 chrX_1965614_1967409 chrX_1965393_1965613;chrX_1967410_1967460 0.00 0.56 0.78 0.00 0.00 0.00 2.21 0.00 0.00 0.96 0.00 1.11 2.46 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 5.00 0.40 0.00 0.00 0.00 0.00 0.47 0.00 0.00 2.21 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.53 0.85 0.64 0.37 1.06 0.61 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.69 0.59 0.00 0.00 1.16 0.00 0.55 K jcn_only_AA CG8677 chr2L + chr2L_21223128_21223191 chr2L_21223128_21223170 chr2L_21222678_21223127;chr2L_21223192_21224563 0.00 NA 0.00 0.00 0.00 0.00 0.00 4.62 0.00 7.41 NA 1.64 7.41 6.25 2.22 0.00 4.17 0.00 0.00 2.38 NA 0.00 0.00 2.13 0.00 0.00 0.00 0.00 4.76 0.00 0.00 NA 4.76 2.78 0.00 NA 0.00 4.17 0.00 0.00 NA 0.00 2.86 3.33 NA 0.00 NA 2.17 1.67 NA 9.09 4.35 NA NA 2.63 NA NA NA K alternative_donor Ptp99A,I_chr3R_25302126_25302175 chr3R + chr3R_25302126_25307191 chr3R_25305548_25307191 chr3R_25307192_25307198;chr3R_25302026_25302125 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 83.33 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 66.67 85.71 100.00 83.33 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 50.00 100.00 100.00 100.00 83.33 66.67 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor alpha-Cat,I_chr3L_23319053_23319787,I_chr3L_23319057_23319748,I_chr3L_23319861_23321813,I_chr3L_23327841_23328002 chr3L - chr3L_23319053_23319787 chr3L_23319057_23319787 chr3L_23319788_23319848;chr3L_23318989_23319052 100.00 97.37 97.78 100.00 95.83 100.00 100.00 100.00 100.00 100.00 96.97 98.53 100.00 96.97 100.00 97.40 100.00 100.00 100.00 98.68 100.00 100.00 100.00 97.78 100.00 100.00 100.00 96.00 94.12 96.67 98.11 100.00 100.00 98.67 100.00 100.00 100.00 100.00 95.83 97.50 100.00 96.72 100.00 97.83 100.00 97.22 100.00 95.00 98.55 98.18 97.87 97.22 100.00 96.88 98.08 100.00 98.21 100.00 K alternative_donor RI_chr3R_5165997_5180143,CG33936,noncoding_15544,I_chr3R_5167726_5180143,RI_chr3R_5183458_5183705 chr3R + chr3R_5167693_5167941;chr3R_5167726_5167941 chr3R_5167648_5167941 chr3R_5167942_5167998;chr3R_5167626_5167647 0.00 0.00 NA 1.18 NA 0.00 NA 1.48 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 1.28 0.92 NA NA 0.00 0.92 0.00 0.00 1.02 0.00 0.00 0.00 0.97 2.94 0.00 0.80 0.00 0.00 NA 0.00 1.67 0.00 0.00 0.67 0.00 0.00 0.00 1.85 NA 0.00 0.65 1.33 1.14 0.00 1.43 0.00 1.09 0.00 1.27 0.00 K intron_retention Dlic chrX + chrX_11048699_11049066 chrX_11048698_11048699;chrX_11049066_11049067 chrX_11048472_11048698;chrX_11049067_11049261 2.82 4.44 3.45 4.12 0.00 0.00 5.63 2.27 3.38 2.70 6.00 0.93 2.56 0.00 3.28 1.72 0.00 8.16 7.32 3.60 2.38 25.45 2.82 4.92 0.00 0.00 3.28 0.00 4.21 0.00 1.64 0.00 3.64 4.49 1.67 3.39 5.06 7.14 5.36 4.52 4.35 1.80 0.00 0.00 0.00 2.50 0.00 3.05 2.70 3.57 6.67 0.00 0.00 3.70 4.62 0.00 3.23 0.00 K intron_retention kst,I_chr3L_3365752_3365816,I_chr3L_3367008_3367514 chr3L + chr3L_3365752_3365810 chr3L_3365751_3365752;chr3L_3365810_3365811 chr3L_3365652_3365751;chr3L_3365811_3366126 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.42 1.31 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.11 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor l(3)82Fd,I_chr3R_1147660_1148709 chr3R - chr3R_1120578_1121362 chr3R_1120602_1121362 chr3R_1121363_1121517;chr3R_1120028_1120577 71.43 69.05 64.44 87.80 58.97 66.67 46.67 79.66 75.00 66.67 62.07 77.46 80.00 86.67 62.50 71.43 71.43 71.43 75.76 75.36 68.42 76.47 67.69 66.67 87.50 71.79 73.17 95.00 71.43 68.42 73.68 80.00 71.05 70.18 65.52 88.57 69.70 64.10 70.18 81.25 75.00 75.29 62.50 80.00 65.52 79.31 63.64 76.00 71.01 60.61 80.85 68.42 63.33 65.38 72.88 74.07 57.14 53.85 K alternative_donor Ucp4A chrX + chrX_17739432_17739522;chrX_17739394_17739522;chrX_17739454_17739522 chrX_17739458_17739522 chrX_17739523_17739558;chrX_17739094_17739393 0.00 0.00 0.00 NA NA NA 0.00 0.00 9.09 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 9.09 NA NA 0.00 0.00 0.00 NA 0.00 11.11 NA 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 NA N alternative_donor CG1115,F_chr3R_1052705_1053045 chr3R + chr3R_1052705_1053045;chr3R_1052701_1053045 chr3R_1052718_1053045 chr3R_1053046_1053145;chr3R_1052605_1052700 24.00 20.93 24.00 35.00 17.39 36.84 22.92 21.95 32.79 35.00 27.27 30.43 18.52 40.00 22.22 38.10 42.86 11.54 19.35 36.17 15.79 11.11 30.61 25.00 14.29 20.00 34.00 22.86 26.09 12.50 14.71 15.00 14.29 34.04 38.46 18.18 22.45 32.43 30.43 23.40 15.62 27.45 4.55 21.74 18.75 22.45 30.00 21.43 33.33 25.49 30.19 30.77 28.57 29.63 14.81 25.00 27.50 16.67 K jcn_only_AD CG3689,I_chr3L_9405436_9406302 chr3L + chr3L_9405083_9406302 chr3L_9405436_9406302 chr3L_9406303_9406402;chr3L_9404917_9405082 1.01 1.03 1.01 0.54 1.01 0.00 0.00 0.00 0.59 2.41 1.64 0.57 0.00 0.00 0.00 0.00 0.00 2.11 0.87 2.22 6.25 1.01 2.88 1.92 1.37 1.16 2.88 1.09 0.99 2.13 0.86 1.23 0.00 0.59 2.00 0.85 3.57 0.92 3.85 0.98 1.71 0.57 1.27 0.00 0.00 1.75 0.64 1.11 1.17 0.72 1.30 0.81 2.00 0.00 1.64 1.27 0.50 0.61 K intron_retention LanA,I_chr3L_6208090_6208194 chr3L - chr3L_6199008_6199076 chr3L_6199007_6199008;chr3L_6199076_6199077 chr3L_6198793_6199007;chr3L_6199077_6202268 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.34 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor mthl3 chr2R - chr2R_13338538_13338593;chr2R_13338538_13340067;chr2R_13338538_13340031;chr2R_13338538_13339957 chr2R_13338538_13340007 chr2R_13338407_13338537;chr2R_13340068_13340078 0.00 0.00 0.00 0.00 0.00 0.00 12.00 0.00 5.41 0.00 7.69 0.00 3.57 7.14 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.67 0.00 NA 0.00 0.00 5.88 NA 0.00 4.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 4.17 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 10.00 0.00 0.00 0.00 K intron_retention cals,I_chr4_1139644_1142084,RI_chr4_1141233_1142084 chr4 - chr4_1136524_1136581 chr4_1136523_1136524;chr4_1136581_1136582 chr4_1135810_1136523;chr4_1136582_1136705 11.76 NA NA 18.18 NA NA 24.32 9.09 11.76 NA NA 23.53 0.00 14.29 NA 7.14 NA NA 10.53 11.76 NA NA NA NA NA NA NA NA NA NA NA NA NA 17.86 NA NA NA NA NA NA NA 21.43 NA NA NA 0.00 NA NA 9.68 NA NA NA NA NA NA NA NA NA K intron_retention mus209 chr2R - chr2R_16150059_16150118 chr2R_16150058_16150059;chr2R_16150118_16150119 chr2R_16149211_16150058;chr2R_16150119_16150388 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4230,I_chr2L_5096701_5097032,RI_chr2L_5097236_5097536 chr2L + chr2L_5096701_5097035 chr2L_5096700_5096701;chr2L_5097035_5097036 chr2L_5096601_5096700;chr2L_5097036_5097132 0.00 NA 0.00 NA NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA 14.29 5.88 NA 0.00 NA NA NA 0.00 NA 0.00 NA K jcn_only_AD CG7920,I_chr3R_25837330_25837394 chr3R - chr3R_25837330_25837394 chr3R_25837330_25837390 chr3R_25837261_25837329;chr3R_25837395_25837459 100.00 100.00 100.00 99.75 100.00 100.00 99.71 99.79 99.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.65 100.00 100.00 99.86 100.00 100.00 100.00 99.58 100.00 99.51 100.00 100.00 100.00 99.53 99.67 100.00 99.44 100.00 100.00 99.61 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.73 99.58 99.69 100.00 100.00 99.83 100.00 100.00 100.00 100.00 99.73 99.47 99.71 100.00 100.00 K intron_retention Cam,I_chr2R_8161049_8161270 chr2R + chr2R_8146971_8147544 chr2R_8146970_8146971;chr2R_8147544_8147545 chr2R_8146902_8146970;chr2R_8147545_8147693 92.31 NA NA 90.00 NA NA 93.55 90.00 92.86 NA NA 92.31 NA NA 71.43 100.00 NA NA NA 100.00 NA 100.00 NA NA NA NA NA 77.78 92.31 NA NA NA 100.00 100.00 NA NA NA NA NA NA 100.00 90.91 NA NA NA 88.89 NA 100.00 75.00 NA NA NA NA NA NA NA NA 91.67 K alternative_acceptor TM4SF chr2R + chr2R_19767878_19768001 chr2R_19767878_19767953 chr2R_19767720_19767877;chr2R_19768002_19768142 92.85 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention put chr3R - chr3R_10449142_10449208 chr3R_10449141_10449142;chr3R_10449208_10449209 chr3R_10448965_10449141;chr3R_10449209_10449394 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Uch,CG10880 chr2L - chr2L_2213549_2213615 chr2L_2213558_2213615 chr2L_2213616_2213684;chr2L_2213489_2213548 100.00 100.00 100.00 100.00 100.00 98.89 99.05 100.00 100.00 100.00 100.00 99.42 98.53 100.00 99.17 100.00 98.65 100.00 100.00 100.00 100.00 100.00 100.00 99.22 100.00 100.00 100.00 98.37 98.80 100.00 99.14 98.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.09 100.00 100.00 100.00 98.25 100.00 100.00 99.01 98.67 98.68 100.00 99.21 98.89 99.40 100.00 K intron_retention betaInt-nu chr2L + chr2L_21053362_21054993 chr2L_21053361_21053362;chr2L_21054993_21054994 chr2L_21053285_21053361;chr2L_21054994_21055744 0.00 0.00 0.00 3.23 NA 0.00 4.65 3.57 3.51 NA 0.00 12.50 NA 0.00 0.00 3.12 0.00 7.41 0.00 5.00 NA 0.00 0.00 NA 0.00 7.14 NA 0.00 46.67 0.00 0.00 NA 11.76 6.25 0.00 0.00 NA NA NA 0.00 0.00 0.00 6.25 NA NA NA NA 18.18 6.52 NA 3.85 0.00 NA NA 6.90 NA 0.00 NA K intron_retention Abi,RI_chr3R_9946195_9946332 chr3R - chr3R_9947835_9948084 chr3R_9947834_9947835;chr3R_9948084_9948085 chr3R_9947468_9947834;chr3R_9948085_9948101 97.56 96.00 96.67 100.00 100.00 100.00 100.00 97.83 98.59 100.00 100.00 95.45 100.00 100.00 89.19 97.67 96.30 95.24 96.88 98.08 100.00 100.00 96.97 97.50 100.00 94.29 100.00 91.30 88.89 100.00 95.65 100.00 97.83 98.00 93.75 100.00 97.50 96.67 93.94 97.56 100.00 96.43 95.83 100.00 96.67 100.00 85.71 97.67 98.25 90.91 96.67 90.00 90.91 100.00 96.77 95.24 97.50 98.04 K alternative_last_exon CG13784,I_chr2L_7209439_7209522,I_chr2L_7219131_7219918 chr2L - chr2L_7209654_7218908;chr2L_7218854_7218908 chr2L_7208582_7218908 chr2L_7209349_7209653;chr2L_7218643_7218853 chr2L_7208417_7208581 chr2L_7218909_7219130 4.00 7.14 0.00 10.00 7.14 7.14 0.00 4.76 0.00 5.26 0.00 0.00 11.11 5.88 13.33 4.17 0.00 0.00 5.88 4.35 0.00 5.56 4.55 0.00 5.88 0.00 0.00 0.00 10.53 8.70 0.00 0.00 4.00 0.00 5.56 5.88 0.00 0.00 3.45 3.23 7.69 6.45 0.00 0.00 9.09 0.00 0.00 4.00 0.00 10.00 4.76 8.33 10.00 10.00 0.00 0.00 0.00 6.25 K intron_retention CG6151,I_chr3L_15806727_15808816 chr3L - chr3L_15805998_15806345 chr3L_15805997_15805998;chr3L_15806345_15806346 chr3L_15805935_15805997;chr3L_15806346_15806453 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 6.67 NA NA NA NA NA NA NA NA NA 0.00 NA NA 3.70 NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA K intron_retention Dsp1,I_chrX_16228447_16229355,I_chrX_16231287_16231413 chrX + chrX_16228447_16230323 chrX_16228446_16228447;chrX_16230323_16230324 chrX_16228347_16228446;chrX_16230324_16230776 47.34 50.00 23.53 36.84 NA 45.45 62.50 38.46 32.26 53.85 NA 45.45 33.33 46.15 66.67 58.33 NA NA 31.58 50.00 NA 72.73 76.47 46.67 NA NA 80.00 72.73 NA 41.67 33.33 NA NA 54.17 NA NA 35.29 38.89 43.75 43.48 NA 48.00 NA 53.85 NA 60.00 50.00 45.45 44.00 69.23 40.00 58.33 45.45 NA 63.64 NA 63.64 53.85 K intron_retention mav,RI_chr4_645290_646129 chr4 - chr4_645563_645616 chr4_645562_645563;chr4_645616_645617 chr4_645398_645562;chr4_645617_646242 100.00 100.00 100.00 100.00 100.00 100.00 96.77 96.30 97.30 NA NA 94.12 100.00 93.75 92.31 100.00 100.00 NA 100.00 96.30 90.91 NA 100.00 100.00 100.00 90.00 100.00 100.00 NA NA 100.00 88.89 100.00 100.00 87.50 NA NA NA NA 93.75 NA 100.00 100.00 93.75 NA 92.86 NA NA 100.00 NA 94.44 100.00 NA NA 100.00 NA NA NA K jcn_only_AD F_chr2L_15260838_15261717,cul-3 chr2L - chr2L_15271144_15271833;chr2L_15271144_15271202 chr2L_15271144_15271322 chr2L_15270905_15271143;chr2L_15271834_15271894 7.79 14.55 8.33 4.90 9.62 9.62 5.22 5.51 6.99 NA 2.33 5.67 4.41 4.92 2.63 4.81 5.80 8.33 4.55 1.83 7.94 13.11 12.64 7.79 10.87 4.60 11.25 24.24 30.23 8.06 6.15 21.74 17.50 5.34 8.47 11.63 11.11 6.25 2.04 10.81 NA 6.87 3.51 6.76 4.00 11.76 5.88 12.50 1.48 12.00 12.68 1.92 26.92 6.90 7.06 8.33 16.22 12.50 K intron_retention Ctr1A,I_chrX_6558480_6559032 chrX + chrX_6559407_6559471 chrX_6559406_6559407;chrX_6559471_6559472 chrX_6559195_6559406;chrX_6559472_6559719 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chrX_1796525_1796585,mip130,I_chrX_1820956_1821011,CG11596 chrX + chrX_1823745_1823805 chrX_1823744_1823745;chrX_1823805_1823806 chrX_1823487_1823744;chrX_1823806_1824524 0.00 0.00 5.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 2.70 0.00 2.94 0.00 0.00 0.00 0.00 1.82 12.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 2.17 0.00 0.00 1.92 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Tsp42Ef,I_chr2R_2912947_2914327 chr2R + chr2R_2914886_2914948 chr2R_2914885_2914886;chr2R_2914948_2914949 chr2R_2914724_2914885;chr2R_2914949_2915146 0.00 0.00 2.63 0.00 0.00 0.00 0.00 1.15 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 1.11 0.00 0.00 0.00 3.70 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.88 0.00 3.15 0.00 0.00 0.00 0.79 0.00 3.10 0.00 0.00 0.90 1.15 0.00 0.00 1.15 2.08 0.00 0.00 0.00 0.00 K intron_retention tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_562850_562904 chr3R_562849_562850;chr3R_562904_562905 chr3R_562745_562849;chr3R_562905_562974 14.32 NA NA 25.00 NA NA 0.00 5.00 30.00 NA NA NA NA NA NA 15.00 NA NA NA 13.64 NA 0.00 NA NA NA NA NA NA 15.38 NA 20.00 NA NA 16.67 NA NA NA NA NA NA NA 9.09 7.14 NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA 12.50 K jcn_only_AA X11L,chrX_17493783_17494244.0,RE_chrX_17497873_17498103 chrX + chrX_17493713_17494809 chrX_17493713_17494805 chrX_17493665_17493712;chrX_17494810_17495337 97.30 100.00 100.00 97.50 100.00 96.15 97.56 92.86 100.00 100.00 96.15 93.33 100.00 88.89 90.91 100.00 NA 100.00 96.97 95.52 100.00 97.14 100.00 97.06 100.00 100.00 96.77 96.67 94.12 97.62 94.34 100.00 100.00 93.18 96.97 100.00 96.19 97.67 97.87 96.10 NA 98.28 100.00 100.00 100.00 94.12 97.30 95.35 95.45 91.30 97.14 100.00 96.00 93.94 100.00 100.00 96.77 95.00 K intron_retention Fkbp13,I_chr2R_17375346_17375523 chr2R - chr2R_17375351_17375523 chr2R_17375350_17375351;chr2R_17375523_17375524 chr2R_17374670_17375350;chr2R_17375524_17375623 0.32 0.00 0.24 0.40 0.00 0.55 0.44 0.54 0.33 0.00 0.27 0.47 1.01 0.00 0.41 0.00 0.51 0.22 0.23 0.19 0.49 0.74 0.41 0.32 1.72 0.00 0.86 1.48 0.57 0.30 0.68 0.49 0.00 0.30 0.00 0.67 0.59 0.42 0.52 0.27 0.43 0.20 0.00 0.32 0.00 0.27 0.28 0.24 0.54 0.26 0.47 0.00 0.47 0.37 0.43 0.16 0.13 0.00 K intron_retention CG5602 chr2R + chr2R_19778256_19778310 chr2R_19778255_19778256;chr2R_19778310_19778311 chr2R_19778193_19778255;chr2R_19778311_19778601 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 17.65 0.00 0.00 14.29 0.00 11.11 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 5.26 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 K alternative_acceptor par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,I_chr2R_15350149_15350210,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350149_15350210;chr2R_15350149_15351846 chr2R_15350149_15351814 chr2R_15350068_15350148;chr2R_15351847_15351914 54.55 33.33 33.33 50.00 33.33 33.33 62.50 66.67 63.64 33.33 NA 50.00 50.00 62.50 80.00 63.64 57.14 60.00 66.67 58.33 60.00 50.00 33.33 50.00 60.00 54.55 NA 50.00 40.00 50.00 55.56 NA 33.33 76.92 75.00 50.00 NA NA 33.33 42.86 100.00 63.64 71.43 60.00 NA 50.00 100.00 60.00 53.85 NA 40.00 57.14 NA NA 50.00 NA 50.00 66.67 K alternative_acceptor CG2046 chr3R - chr3R_1619292_1619362 chr3R_1619299_1619362 chr3R_1619363_1619431;chr3R_1619233_1619291 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 96.30 100.00 100.00 100.00 100.00 100.00 98.75 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.94 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27044867;chr3R_27044771_27045188;chr3R_27044771_27045257;chr3R_27044771_27045027;chr3R_27044771_27045110;chr3R_27044771_27044831;chr3R_27044771_27044990;chr3R_27044771_27044895 chr3R_27044771_27045132 chr3R_27044671_27044770;chr3R_27045258_27045273 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG12946,noncoding_15730,I_chr3R_5599701_5600032,I_chr3R_5609682_5609889 chr3R - chr3R_5599358_5599459 chr3R_5599357_5599358;chr3R_5599459_5599460 chr3R_5599286_5599357;chr3R_5599460_5599700 63.97 36.36 63.64 NA NA 88.89 76.92 63.64 54.55 75.00 NA 63.64 80.00 NA 81.82 73.33 88.89 NA 70.00 65.00 NA 10.53 73.33 50.00 NA 70.00 66.67 45.45 60.87 71.43 72.73 46.15 58.62 75.00 57.14 73.33 57.14 50.00 63.64 66.67 53.33 50.00 NA 50.00 37.50 64.29 60.00 64.71 70.00 NA 54.17 66.67 NA NA 46.15 NA NA 75.00 K jcn_only_AD E(bx),I_chr3L_246324_246699 chr3L - chr3L_246324_246885;chr3L_246324_246438;chr3L_246324_246408;chr3L_246324_246794;chr3L_246324_246382;chr3L_246324_246388 chr3L_246324_246427 chr3L_246224_246323;chr3L_246886_246901 23.80 23.40 25.93 12.99 17.50 28.89 43.59 23.68 22.55 17.95 20.45 24.18 24.53 29.09 17.65 23.08 27.50 24.49 23.21 12.30 30.61 28.17 20.00 30.30 28.12 25.86 16.98 24.32 15.38 27.66 16.18 NA 16.13 26.74 27.50 32.08 17.65 19.35 23.91 9.59 NA 23.46 34.69 9.43 NA NA NA 25.00 20.20 NA 21.13 28.57 NA NA 32.08 NA NA NA K alternative_last_exon rhea,E_chr3L_8554660_8564426,I_chr3L_8563622_8564067 chr3L + chr3L_8562102_8564067 chr3L_8562102_8563408 chr3L_8564068_8564184 chr3L_8563409_8563830 chr3L_8561911_8562101 0.00 0.00 0.00 1.41 0.00 0.00 2.33 1.45 0.00 0.00 0.00 0.00 2.78 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 3.23 0.00 0.00 2.78 0.00 2.17 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Vps35,I_chr2R_18073728_18074021,RI_chr2R_18074210_18074272 chr2R + chr2R_18073826_18074021 chr2R_18073825_18073826;chr2R_18074021_18074022 chr2R_18073667_18073825;chr2R_18074022_18074121 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention twf chr3R + chr3R_9948459_9948517 chr3R_9948458_9948459;chr3R_9948517_9948518 chr3R_9948398_9948458;chr3R_9948518_9948595 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.94 NA 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 5.00 0.00 0.00 0.00 9.52 0.00 NA 3.23 15.79 NA 9.09 0.00 2.13 0.00 0.00 0.00 4.35 0.00 0.00 NA 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 4.00 0.00 K jcn_only_AD CG42533,EI_chr2L_7473200_7473297,RI_chr2L_7473200_7473419,F_chr2L_7476906_7476978 chr2L - chr2L_7473200_7473656;chr2L_7473200_7473297;chr2L_7473200_7473770 chr2L_7473200_7473419 chr2L_7473100_7473199;chr2L_7473771_7473889 50.00 47.06 44.74 22.00 NA 46.43 40.82 36.00 36.36 88.89 29.63 34.29 35.71 10.26 70.37 59.57 50.00 28.00 44.19 60.47 39.13 59.57 62.79 48.48 62.50 47.62 45.71 NA 73.47 45.71 67.19 62.50 65.31 45.61 59.38 65.85 61.76 45.00 55.00 63.01 60.00 60.26 54.55 62.22 73.91 67.11 50.00 77.78 38.27 42.86 47.62 45.83 66.67 47.83 46.15 58.06 60.00 69.90 N jcn_only_AD CG30152 chr2R + chr2R_16558842_16559250 chr2R_16559184_16559250 chr2R_16559251_16559363;chr2R_16558698_16558841 100.00 100.00 100.00 93.22 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.38 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 K alternative_acceptor CG1140,I_chr3L_1964610_1964836 chr3L + chr3L_1964610_1965059;chr3L_1964610_1964836 chr3L_1964610_1965074 chr3L_1964541_1964609;chr3L_1965075_1965273 96.08 100.00 95.00 100.00 92.59 97.14 90.48 95.00 92.50 100.00 93.33 92.77 90.00 91.89 97.92 96.67 96.55 91.18 93.55 96.61 96.88 61.90 92.45 96.08 94.44 90.00 100.00 100.00 100.00 97.22 95.92 96.77 96.72 92.31 93.33 97.87 91.18 97.44 94.52 90.91 100.00 94.94 100.00 95.00 94.59 96.08 91.67 96.61 97.22 95.45 98.00 90.32 100.00 96.08 96.08 97.22 95.45 97.87 K intron_retention RhoGAP18B,I_chrX_19040176_19040738 chrX - chrX_19040176_19044843 chrX_19040175_19040176;chrX_19044843_19044844 chrX_19040076_19040175;chrX_19044844_19045992 11.37 11.76 20.00 36.11 18.60 22.41 19.67 21.88 21.19 16.67 10.53 19.05 16.28 20.83 23.88 26.76 30.77 8.20 26.67 12.10 16.98 8.26 11.29 8.00 10.34 20.83 10.53 21.43 2.82 17.65 29.82 5.63 8.94 24.71 14.00 6.98 4.76 9.68 2.35 6.15 2.47 26.77 31.25 5.49 3.57 7.26 5.88 11.37 25.42 0.00 8.82 9.38 3.51 0.00 28.00 0.00 0.00 5.24 K cassette CG11155,I_chr4_1151213_1151903,I_chr4_1152220_1152710,I_chr4_1152585_1152687 chr4 + chr4_1152585_1154500 chr4_1152585_1152710;chr4_1153200_1154500 chr4_1152711_1153199 chr4_1152485_1152584;chr4_1154501_1154522 70.09 87.50 60.00 50.00 80.00 50.00 66.67 58.06 68.00 NA 80.00 54.55 60.00 64.29 75.00 75.00 80.00 50.00 75.00 68.75 71.43 83.33 83.33 71.43 NA 44.44 80.00 NA NA NA 65.00 NA NA 60.00 50.00 NA 75.00 66.67 75.00 71.43 75.00 64.71 81.82 50.00 NA 83.33 80.00 57.14 66.67 55.56 66.67 55.56 80.00 100.00 58.33 83.33 71.43 83.33 K cassette mrj,RI_chr2R_12093733_12108627,I_chr2R_12108655_12109044,I_chr2R_12108697_12109174 chr2R - chr2R_12093585_12109174 chr2R_12093585_12108627;chr2R_12108655_12109174 chr2R_12108628_12108654 chr2R_12093485_12093584;chr2R_12109175_12109202 24.35 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 27.27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 21.43 K jcn_only_AD nito,I_chr2R_3852832_3852883 chr2R + chr2R_3850065_3850273 chr2R_3850109_3850273 chr2R_3850274_3850898;chr2R_3850045_3850064 100.00 100.00 100.00 100.00 NA 100.00 95.45 100.00 100.00 NA NA 96.88 NA 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 100.00 97.44 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA NA K intron_retention RpL3,E_chr3R_7047964_7050565,I_chr3R_7049970_7050189,snoRNA:Me28S-G2017 chr3R + chr3R_7049970_7050189 chr3R_7049969_7049970;chr3R_7050189_7050190 chr3R_7049870_7049969;chr3R_7050190_7050190 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA 90.00 95.24 NA NA NA NA NA 100.00 NA NA 88.89 NA NA NA NA NA NA NA NA NA 88.89 NA 100.00 88.89 NA NA NA NA NA NA NA 90.00 K intron_retention CG8029,I_chr2R_5095165_5095256 chr2R + chr2R_5095522_5095587 chr2R_5095521_5095522;chr2R_5095587_5095588 chr2R_5095419_5095521;chr2R_5095588_5095849 2.40 0.00 1.57 3.02 1.07 1.43 2.82 1.67 2.03 2.16 1.69 0.99 1.39 1.38 1.14 1.56 1.01 0.94 0.00 1.90 1.08 12.17 4.76 4.05 6.11 4.23 5.81 5.59 7.43 3.68 3.89 2.96 2.27 1.29 3.64 6.15 4.13 4.02 2.56 2.40 4.12 1.24 0.51 4.13 3.24 3.00 1.91 3.30 1.08 4.88 3.95 2.44 0.00 3.09 0.38 2.61 0.44 1.74 K alternative_donor Cdk4,RI_chr2R_12471503_12471656 chr2R + chr2R_12467202_12468346;chr2R_12467432_12468346;chr2R_12467241_12468346;chr2R_12467275_12468346;chr2R_12467474_12468346;chr2R_12467225_12468346;chr2R_12467261_12468346;chr2R_12467039_12468346 chr2R_12467227_12468346 chr2R_12468347_12468520;chr2R_12467030_12467038 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 K alternative_donor CG11033,I_chr3R_4879198_4879257,I_chr3R_4882567_4883651 chr3R + chr3R_4878298_4879257 chr3R_4878350_4879257 chr3R_4879258_4879357;chr3R_4878279_4878297 71.43 87.50 87.50 85.71 NA 100.00 66.67 58.82 64.00 85.71 54.55 80.95 85.71 90.00 92.31 80.00 55.56 66.67 71.43 84.62 NA 75.00 71.43 58.33 71.43 50.00 69.23 60.00 72.73 66.67 100.00 NA NA 71.43 50.00 62.50 68.42 63.64 88.89 77.78 NA 70.59 87.50 78.57 NA NA 55.56 80.00 54.17 55.56 88.24 77.78 50.00 NA 81.82 75.00 71.43 66.67 K intron_retention CG3045,RI_chr2R_18061765_18061839,RI_chr2R_18066002_18070327 chr2R - chr2R_18061765_18061820 chr2R_18061764_18061765;chr2R_18061820_18061821 chr2R_18061696_18061764;chr2R_18061821_18061884 0.00 NA 0.00 0.00 NA 0.00 0.00 2.38 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 7.41 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 K alternative_acceptor CG8108,I_chr3L_9857808_9858157,EI_chr3L_9859462_9859590 chr3L + chr3L_9857903_9858179 chr3L_9857903_9858157 chr3L_9857732_9857902;chr3L_9858180_9858257 80.00 81.48 75.00 77.42 80.00 81.48 75.76 86.36 76.60 100.00 77.78 78.26 95.65 76.92 82.14 85.42 88.89 82.14 68.89 75.00 73.68 79.41 81.58 66.67 92.86 80.49 74.29 57.14 80.00 73.68 75.00 86.36 85.19 86.67 73.33 74.07 80.00 66.67 75.00 87.50 75.00 85.71 75.00 82.61 91.67 73.68 84.00 80.00 84.62 83.33 80.49 76.00 80.95 76.47 82.05 70.83 96.30 82.05 K alternative_acceptor CG17660 chr2L - chr2L_1709806_1709877 chr2L_1709812_1709877 chr2L_1709878_1709963;chr2L_1709617_1709805 98.65 100.00 100.00 98.57 97.44 100.00 100.00 98.61 100.00 98.48 97.83 98.95 97.83 100.00 98.15 100.00 100.00 100.00 97.83 99.07 97.78 100.00 96.84 98.65 98.18 97.78 100.00 97.83 100.00 98.28 93.88 100.00 99.08 98.55 100.00 100.00 99.19 100.00 100.00 98.98 100.00 98.97 97.22 100.00 100.00 100.00 98.11 97.83 97.44 98.00 100.00 97.37 98.21 97.37 97.83 98.04 98.31 98.15 K intron_retention dSyno chr3R + chr3R_27598765_27598818 chr3R_27598764_27598765;chr3R_27598818_27598819 chr3R_27598704_27598764;chr3R_27598819_27599668 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 1.32 0.00 2.38 0.00 1.41 0.00 1.52 0.00 7.55 0.00 0.00 2.47 3.92 0.00 0.00 3.39 0.00 0.00 0.00 0.00 2.86 K cassette grp,I_chr2L_16697644_16698961,R_chr2L_16698072_16698138 chr2L + chr2L_16691193_16696584 chr2L_16691193_16691900;chr2L_16692125_16696584 chr2L_16691901_16692124 chr2L_16690902_16691192;chr2L_16696585_16696762 98.72 100.00 98.48 94.44 98.00 100.00 100.00 100.00 99.20 97.78 100.00 99.05 97.67 98.25 100.00 98.70 97.67 100.00 98.51 100.00 100.00 98.44 98.78 98.75 100.00 100.00 94.67 100.00 91.80 98.48 98.75 98.28 97.80 100.00 98.18 98.25 98.72 100.00 98.82 97.46 96.92 96.95 95.83 98.36 98.61 100.00 98.04 100.00 99.25 98.08 98.77 97.96 97.56 100.00 98.68 100.00 100.00 98.82 K jcn_only_AA Rtnl1,I_chr2L_4994995_5006383,RE_chr2L_4994997_5008180,I_chr2L_4999312_5000248,I_chr2L_4999386_4999670,I_chr2L_4999386_5000201,I_chr2L_5027222_5028118 chr2L - chr2L_4994995_5000248;chr2L_4999340_5000248 chr2L_4999386_5000248 chr2L_5000249_5000301 100.00 NA 100.00 93.10 NA 95.65 95.24 94.74 98.11 NA NA 100.00 NA NA 100.00 98.36 100.00 100.00 NA 100.00 100.00 NA NA NA NA 100.00 NA NA NA NA 96.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA 95.65 NA NA NA NA 95.45 100.00 100.00 95.65 NA NA 96.43 NA 100.00 NA 100.00 94.12 K intron_retention ZnT63C chr3L + chr3L_3304022_3304601 chr3L_3304021_3304022;chr3L_3304601_3304602 chr3L_3303722_3304021;chr3L_3304602_3304665 80.56 NA NA NA NA NA NA 83.33 63.64 NA NA 71.88 NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA 90.91 60.00 NA NA 73.33 87.50 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 75.00 NA NA NA NA NA NA NA NA 77.78 N alternative_donor noncoding_4495,CG30438 chr2R + chr2R_1384479_1387136 chr2R_1386531_1387136 chr2R_1387137_1387329;chr2R_1384184_1384478 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Ssadh,RI_chr3R_21451890_21451963,I_chr3R_21452371_21452464,I_chr3R_21452407_21452453 chr3R - chr3R_21452368_21452453;chr3R_21452371_21452453 chr3R_21452386_21452453 chr3R_21452454_21452553;chr3R_21452307_21452367 12.12 4.76 21.88 20.00 NA NA 6.90 10.00 11.90 NA 9.52 15.00 14.29 16.67 15.00 15.62 NA 13.64 NA 9.52 NA 12.50 6.06 11.11 NA NA 16.22 20.59 NA 14.29 13.64 NA NA 5.00 10.00 10.00 16.67 13.89 6.25 14.29 NA 15.79 NA 8.70 NA 21.62 12.12 9.52 14.71 20.00 9.30 NA 8.00 7.14 8.00 NA 7.50 7.69 K alternative_donor G9a,I_chrX_145325_145634,I_chrX_145570_145634 chrX + chrX_145570_145634 chrX_145575_145634 chrX_145635_145734;chrX_145470_145569 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 91.67 91.67 94.12 100.00 100.00 100.00 100.00 92.31 91.67 100.00 100.00 NA 100.00 95.65 100.00 100.00 100.00 100.00 100.00 90.91 100.00 90.91 NA 93.33 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 95.00 NA 100.00 100.00 100.00 NA 100.00 100.00 92.31 93.75 100.00 100.00 100.00 100.00 91.67 87.50 90.91 K intron_retention CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4840589 chr3R_4839214_4839215;chr3R_4840589_4840590 chr3R_4839038_4839214;chr3R_4840590_4840610 23.08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA K alternative_donor deltaCOP,I_chrX_1754047_1754089,I_chrX_1755132_1755191,E_chrX_1755139_1755188,I_chrX_1757755_1757801 chrX - chrX_1755132_1755191 chrX_1755132_1755188 chrX_1755039_1755131;chrX_1755192_1755288 99.32 98.04 99.21 99.43 98.98 100.00 99.33 98.99 98.67 100.00 100.00 99.47 99.05 98.89 100.00 100.00 100.00 99.06 99.06 99.23 99.09 100.00 98.31 100.00 100.00 100.00 99.17 98.78 98.89 98.73 100.00 100.00 100.00 99.41 98.85 100.00 98.82 98.23 99.32 99.19 97.59 99.62 100.00 100.00 98.82 100.00 100.00 100.00 99.08 99.31 99.08 98.85 100.00 98.70 100.00 98.21 100.00 100.00 K jcn_only_AA Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5003957_5004832 chr2R_5003957_5004682 chr2R_5003888_5003956;chr2R_5004833_5005357 100.00 100.00 98.48 98.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.31 100.00 95.16 98.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.78 100.00 98.75 96.72 98.73 100.00 100.00 100.00 100.00 100.00 100.00 99.11 100.00 100.00 100.00 100.00 98.53 100.00 100.00 100.00 100.00 97.22 100.00 100.00 K intron_retention Hcf,I_chr4_391984_392875 chr4 + chr4_380911_381212 chr4_380910_380911;chr4_381212_381213 chr4_380848_380910;chr4_381213_381632 26.32 NA 36.36 34.62 NA NA 26.32 23.81 21.43 NA NA 27.78 NA NA NA 26.09 NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA 23.81 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG4165,I_chrX_5317784_5317881,I_chrX_5321743_5321838 chrX + chrX_5317784_5317881 chrX_5317784_5317847 chrX_5317684_5317783;chrX_5317882_5317981 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 95.83 100.00 92.00 100.00 96.15 100.00 NA 96.15 100.00 95.24 100.00 100.00 95.45 100.00 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA 100.00 95.45 100.00 NA 96.55 100.00 100.00 100.00 K alternative_acceptor CG14023 chr2L - chr2L_5324907_5325951 chr2L_5324910_5325951 chr2L_5325952_5326648;chr2L_5324726_5324906 82.08 88.89 76.92 92.86 72.73 63.64 78.57 80.00 76.67 NA NA 82.35 87.50 90.91 83.33 66.67 90.00 85.71 61.54 70.37 NA NA 90.48 80.00 88.89 90.00 87.50 90.91 NA 90.00 NA NA 75.00 81.82 87.50 87.50 91.67 77.78 77.78 78.57 NA 79.17 66.67 NA NA NA NA 75.00 75.86 NA 92.86 NA NA NA 84.62 NA NA NA K intron_retention Zn72D,RF_chr3L_16100887_16102721,I_chr3L_16105199_16105253 chr3L - chr3L_16100887_16102721 chr3L_16100886_16100887;chr3L_16102721_16102722 chr3L_16100787_16100886;chr3L_16102722_16102821 10.53 8.70 12.24 7.81 4.08 10.87 8.47 12.86 12.00 6.45 13.64 12.87 4.08 19.51 15.38 20.00 5.13 13.89 11.90 18.75 14.63 14.89 13.40 8.54 10.34 0.00 10.53 12.50 16.67 9.23 15.79 10.87 6.58 14.47 12.77 9.30 7.14 10.39 9.28 7.06 9.09 11.34 10.64 14.04 10.77 15.87 10.00 9.52 11.90 7.81 9.30 8.00 7.41 9.62 11.67 9.52 5.81 10.34 K alternative_acceptor CG31313,REI_chr3R_10392729_10393060,I_chr3R_10394322_10394381,RI_chr3R_10400799_10401492 chr3R - chr3R_10392729_10392886 chr3R_10392747_10392886 chr3R_10392887_10392898;chr3R_10392629_10392728 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA K cassette dmondo,I_chr2L_21301528_21308287,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579 chr2L - chr2L_21301528_21308287 chr2L_21301528_21304824;chr2L_21304932_21308287 chr2L_21304825_21304931 chr2L_21301454_21301527;chr2L_21308288_21308387 99.19 100.00 100.00 98.98 98.36 100.00 100.00 99.19 99.27 96.97 98.25 100.00 100.00 100.00 100.00 99.18 100.00 100.00 98.63 100.00 100.00 94.37 97.50 98.73 95.56 100.00 98.81 95.65 97.06 100.00 100.00 100.00 100.00 100.00 100.00 94.55 96.30 96.43 98.65 98.17 97.37 100.00 100.00 98.91 97.67 97.73 100.00 98.33 99.25 95.16 98.78 100.00 100.00 97.44 100.00 92.68 100.00 98.33 K alternative_donor noncoding_7780,CG30120,CG5189 chr2R + chr2R_14333622_14334268 chr2R_14334211_14334268 chr2R_14334269_14334314;chr2R_14333569_14333621 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG7099 chr2L + chr2L_13392700_13392764 chr2L_13392699_13392700;chr2L_13392764_13392765 chr2L_13391333_13392699;chr2L_13392765_13393987 0.00 0.00 0.00 NA NA NA 0.00 0.00 4.35 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA NA NA 6.25 0.00 NA NA 0.00 NA 0.00 6.67 NA 0.00 NA 0.00 NA NA NA NA 0.00 0.00 0.00 NA 0.00 NA 5.56 NA 0.00 NA K jcn_only_AA Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5006553_5008568;chr2R_5006553_5007804;chr2R_5006553_5008598 chr2R_5006553_5008282 chr2R_5006405_5006552;chr2R_5008599_5008637 66.67 NA NA NA NA NA NA NA 85.71 NA NA 28.17 NA NA NA NA NA NA NA 83.33 NA NA 66.67 52.17 72.00 NA NA NA NA NA NA NA 66.67 NA NA NA 67.74 59.38 48.57 79.17 NA 72.73 NA 50.00 51.52 NA NA NA NA NA 73.91 NA NA NA NA 52.38 68.18 NA K jcn_only_AA Rtnl1,I_chr2L_4994995_5006383,RE_chr2L_4994997_5008180,I_chr2L_4999312_5000248,I_chr2L_4999386_4999670,I_chr2L_4999386_5000201,I_chr2L_5027222_5028118 chr2L - chr2L_4999386_5000248;chr2L_4994995_5000248 chr2L_4999340_5000248 chr2L_5000249_5000301 0.00 NA 0.00 6.90 NA 0.00 4.76 2.63 1.89 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA NA 0.00 NA NA NA NA 4.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 NA NA 3.57 NA 0.00 NA 0.00 5.88 K intron_retention CaMKII,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,I_chr4_1071489_1071884,RI_chr4_1071489_1071968,I_chr4_1071569_1071884,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1071569_1071884 chr4_1071568_1071569;chr4_1071884_1071885 chr4_1071469_1071568;chr4_1071885_1071899 100.00 93.33 100.00 100.00 NA 100.00 97.06 100.00 97.30 NA NA 100.00 100.00 100.00 94.12 97.22 100.00 100.00 100.00 96.43 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 95.65 NA NA 100.00 100.00 NA NA NA NA 100.00 NA 96.43 100.00 NA 100.00 100.00 NA 100.00 100.00 90.00 100.00 100.00 NA NA 100.00 NA NA 100.00 K jcn_only_AD CG1622,REI_chrX_13191277_13191339,I_chrX_13191916_13192167,I_chrX_13192409_13192738,EI_chrX_13192857_13192928 chrX + chrX_13191273_13191339 chrX_13191277_13191339 chrX_13191340_13191439;chrX_13191177_13191272 0.83 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 3.03 1.28 0.00 1.47 0.00 0.78 0.00 1.75 0.00 0.46 1.82 1.96 0.59 0.00 1.82 0.00 1.74 0.00 3.95 3.85 3.47 0.00 0.00 0.00 1.56 0.00 3.03 1.20 1.42 3.47 1.75 2.19 0.00 2.74 1.08 0.83 0.00 0.00 0.56 0.92 2.56 2.70 1.85 2.96 1.89 3.33 0.00 0.79 K intron_retention I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_927771_929704,CG32021,RI_chr4_928180_928245,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_928177_928245 chr4_928176_928177;chr4_928245_928246 chr4_928109_928176;chr4_928246_928314 50.00 68.97 53.19 76.71 47.50 48.89 31.43 68.12 55.77 46.81 45.00 58.70 62.50 70.00 56.76 52.38 59.46 43.18 45.65 62.07 44.44 67.43 50.54 43.66 45.45 61.36 68.87 69.23 53.16 43.06 40.00 45.95 74.24 50.00 42.11 51.56 42.67 51.92 43.24 30.83 55.56 51.14 48.94 38.26 46.30 40.91 42.86 43.68 57.95 41.10 34.67 40.74 60.71 37.50 59.26 45.45 50.00 55.10 K cassette CG2950,I_chr2L_4844647_4845086,I_chr2L_4844952_4845086 chr2L - chr2L_4844773_4845253;chr2L_4844952_4845253 chr2L_4844773_4845086,chr2L_4844952_4845086;chr2L_4845159_4845253 chr2L_4845087_4845158 chr2L_4844712_4844772;chr2L_4845254_4845575 98.00 100.00 97.62 96.77 97.06 100.00 97.67 98.00 98.73 95.24 96.15 95.52 100.00 100.00 97.50 100.00 96.67 100.00 100.00 98.73 97.30 90.62 98.31 97.30 96.15 97.22 97.96 84.00 96.88 100.00 100.00 100.00 97.14 100.00 100.00 100.00 98.15 97.14 100.00 96.83 96.55 98.51 100.00 100.00 87.88 97.22 96.88 100.00 98.31 100.00 100.00 96.30 96.43 100.00 97.14 96.67 100.00 100.00 K alternative_last_exon CG32425,I_chr3L_20490581_20505036,CG18281,CG17637,CG5078,I_chr3L_20502617_20503129,I_chr3L_20504930_20505036 chr3L + chr3L_20490526_20505036 chr3L_20490526_20503129 chr3L_20505037_20505485 chr3L_20503130_20504251 chr3L_20490481_20490525 15.38 12.50 20.00 22.22 50.00 14.29 25.00 10.53 13.64 20.00 12.50 22.22 15.38 37.50 20.00 7.69 37.50 28.57 22.22 10.53 18.18 13.16 5.88 3.33 11.76 7.69 45.45 28.57 23.53 13.33 11.11 31.58 11.76 11.76 16.67 37.50 4.00 35.71 5.26 14.29 18.18 4.17 28.57 12.50 8.00 22.22 15.38 9.52 4.35 17.39 13.04 22.22 28.57 14.29 10.53 16.67 10.00 16.67 K intron_retention CG5355,I_chr2L_10413213_10413324 chr2L - chr2L_10411037_10411090 chr2L_10411036_10411037;chr2L_10411090_10411091 chr2L_10410510_10411036;chr2L_10411091_10411363 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.90 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157014_157316,RI_chr4_157014_157504,I_chr4_157794_157864 chr4 + chr4_157014_157316 chr4_157013_157014;chr4_157316_157317 chr4_156914_157013;chr4_157317_157403 68.75 NA NA 68.75 NA NA 91.67 91.67 57.14 NA NA 76.92 NA NA NA 53.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 63.64 NA NA NA NA NA NA NA 78.57 NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA K intron_retention fog,I_chrX_22231114_22238023,RE_chrX_22256169_22256990 chrX - chrX_22256169_22256878 chrX_22256168_22256169;chrX_22256878_22256879 chrX_22256069_22256168;chrX_22256879_22256918 12.50 NA NA 10.71 NA NA 6.90 14.29 14.29 NA NA 20.00 6.67 24.00 NA 16.67 NA NA 0.00 21.74 NA NA NA NA NA NA NA NA NA NA NA NA NA 6.45 NA NA NA NA NA NA NA 9.09 NA NA NA NA NA 25.00 8.82 NA NA NA NA NA NA NA NA NA K alternative_donor RpL17,I_chrX_6637182_6638207,RI_chrX_6637182_6637528,I_chrX_6637182_6637973,snoRNA:Psi28S-1232 chrX - chrX_6637182_6638178;chrX_6637182_6638141;chrX_6637182_6637982 chrX_6637182_6638228 chrX_6637093_6637181;chrX_6638229_6638235 55.56 48.57 47.50 51.85 44.90 51.28 31.11 54.72 45.71 88.64 35.29 44.26 29.73 43.75 48.89 48.48 46.43 39.13 56.41 52.27 44.44 87.07 52.78 53.66 55.88 36.17 74.42 83.33 66.67 88.64 62.50 91.74 95.43 55.56 80.39 83.02 46.88 50.00 61.11 89.08 91.61 51.11 48.72 84.26 83.91 89.47 68.52 93.57 56.60 77.55 53.33 47.62 91.97 64.86 54.00 66.67 80.46 93.86 K cassette CG17337,REI_chr2R_1585514_1586790,I_chr2R_1585514_1586919,RI_chr2R_1586737_1586790 chr2R + chr2R_1585514_1586790 chr2R_1585514_1585960;chr2R_1586730_1586790 chr2R_1585961_1586729 chr2R_1585414_1585513;chr2R_1586791_1586858 100.00 100.00 100.00 98.48 100.00 100.00 100.00 99.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.32 99.66 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.02 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.44 100.00 100.00 100.00 99.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CEI_chrX_17177009_17196871,CG5445,I_chrX_17196752_17196871,RI_chrX_17196772_17196871,I_chrX_17196820_17196875,I_chrX_17198393_17198730 chrX + chrX_17196820_17196875 chrX_17196820_17196871 chrX_17196720_17196819;chrX_17196876_17196971 100.00 100.00 NA NA NA NA 100.00 100.00 100.00 NA NA NA NA NA NA NA NA NA 100.00 95.35 NA 100.00 100.00 100.00 NA NA 92.00 NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA 91.30 97.22 NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 NA NA NA 95.00 100.00 K alternative_donor E2f,CG6353 chr3R - chr3R_17487942_17488440 chr3R_17487942_17488436 chr3R_17486978_17487941;chr3R_17488441_17488464 6.06 2.94 2.44 20.59 0.00 2.86 5.77 7.14 4.84 5.00 4.55 7.02 6.25 0.00 5.88 9.76 4.55 3.23 9.09 5.75 6.67 10.20 8.00 5.00 8.33 0.00 10.53 14.00 12.00 2.70 16.28 2.27 8.89 8.16 5.00 8.82 3.85 2.70 3.92 5.63 10.81 2.99 0.00 5.41 8.00 8.47 6.56 18.52 7.84 12.07 6.67 3.23 5.26 3.28 7.50 8.70 6.06 10.42 K intron_retention CG4825,RI_chr3L_20516382_20516451 chr3L - chr3L_20517614_20518585 chr3L_20517613_20517614;chr3L_20518585_20518586 chr3L_20517355_20517613;chr3L_20518586_20519287 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 2.56 2.63 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 1.79 0.00 0.00 0.00 0.00 0.00 3.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG5899,I_chr2L_9911150_9911296 chr2L - chr2L_9911150_9911296 chr2L_9911150_9911208 chr2L_9911050_9911149;chr2L_9911297_9911396 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 99.18 100.00 96.67 100.00 100.00 95.08 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 95.92 100.00 100.00 100.00 97.18 100.00 100.00 100.00 100.00 90.91 100.00 98.33 100.00 100.00 98.15 98.92 100.00 100.00 100.00 98.31 100.00 100.00 100.00 K intron_retention CG32394,RI_chr3L_6731199_6731803,dikar chr3L - chr3L_6730773_6731803 chr3L_6730772_6730773;chr3L_6731803_6731804 chr3L_6730635_6730772;chr3L_6731804_6731903 14.61 10.53 4.76 18.18 0.00 10.71 13.16 12.24 10.00 10.81 NA 14.29 36.67 3.45 7.14 12.82 0.00 5.88 13.79 14.81 0.00 28.95 10.64 21.88 27.27 21.74 12.82 26.47 17.07 27.27 15.38 25.00 17.65 14.58 26.09 16.67 9.30 20.00 14.63 19.30 29.41 13.43 13.04 26.67 43.75 36.36 25.00 16.95 8.93 35.71 17.02 5.56 10.53 46.15 12.50 NA NA 13.64 K intron_retention headcase chr3R + chr3R_26185784_26185863 chr3R_26185783_26185784;chr3R_26185863_26185864 chr3R_26185695_26185783;chr3R_26185864_26185963 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 7.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG18004 chr2R + chr2R_6773038_6773112 chr2R_6773038_6773094 chr2R_6772971_6773037;chr2R_6773113_6773178 100.00 100.00 100.00 96.15 95.00 92.31 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 92.86 100.00 97.44 100.00 100.00 100.00 100.00 100.00 94.44 100.00 90.48 100.00 100.00 100.00 94.12 100.00 96.55 100.00 100.00 100.00 95.65 100.00 100.00 100.00 93.10 100.00 92.86 95.65 100.00 100.00 85.71 100.00 100.00 100.00 100.00 94.44 100.00 100.00 96.30 97.06 100.00 K jcn_only_AD SmG chrX - chrX_16534064_16534128 chrX_16534064_16534125 chrX_16533995_16534063;chrX_16534129_16534194 99.66 99.35 99.80 99.82 99.54 99.54 99.75 99.38 99.56 99.24 99.01 99.50 100.00 99.69 99.56 100.00 99.01 99.69 99.70 99.59 99.21 100.00 99.60 99.35 99.64 99.44 100.00 99.47 100.00 99.19 99.74 99.46 99.75 99.86 99.72 99.79 99.35 99.68 99.42 99.68 99.70 99.78 100.00 99.66 99.83 99.47 99.50 99.10 99.89 98.99 100.00 99.15 99.62 99.76 99.77 99.66 99.57 99.82 N alternative_acceptor capt,I_chr2L_1156009_1158078,I_chr2L_1163632_1163759 chr2L - chr2L_1153732_1158078 chr2L_1157987_1158078 chr2L_1158079_1158178;chr2L_1153632_1153731 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.42 0.29 0.00 0.00 0.27 0.00 0.56 0.00 0.49 0.00 0.67 0.00 0.47 0.00 0.25 0.23 0.00 0.00 0.00 0.42 0.65 0.57 0.00 0.49 0.00 0.56 0.41 0.00 0.42 0.36 0.00 0.39 0.24 0.00 0.29 0.65 0.00 0.00 0.34 0.00 0.00 0.32 0.00 0.29 0.00 0.00 0.00 0.48 0.00 0.00 0.00 K alternative_donor CG11790,CG11791 chr3R + chr3R_20876091_20876902;chr3R_20875669_20876902 chr3R_20876340_20876902 chr3R_20876903_20877278;chr3R_20875600_20875668 70.97 61.76 84.21 76.47 64.29 77.42 78.00 84.29 78.21 60.00 85.19 84.75 65.85 88.57 82.86 87.50 85.71 66.67 80.43 87.37 88.89 70.97 66.67 72.50 81.25 86.67 84.38 61.90 65.38 70.37 87.23 64.00 67.74 85.29 76.92 66.67 60.00 68.00 64.71 55.74 48.39 80.60 82.76 60.98 52.63 62.79 62.50 51.16 87.84 62.22 63.89 74.07 45.16 72.73 76.09 61.11 55.56 33.33 K jcn_only_AA Atg18,I_chr3L_8182683_8182941 chr3L + chr3L_8180294_8180578;chr3L_8180294_8180586 chr3L_8180294_8180540 chr3L_8180118_8180293;chr3L_8180587_8180676 0.93 1.37 1.30 0.00 0.00 0.00 5.56 0.00 0.00 5.26 0.00 0.00 0.00 1.59 1.12 1.23 1.41 3.28 1.27 0.00 0.00 5.11 0.00 3.16 0.00 1.27 0.00 2.13 1.96 1.10 0.00 4.55 0.68 0.00 0.00 8.77 1.71 0.93 0.00 2.48 8.57 1.97 3.77 0.00 1.30 3.08 0.00 3.49 0.72 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 1.11 K alternative_donor Aats-val chr2R + chr2R_9086425_9086478;chr2R_9086429_9086478 chr2R_9086421_9086478 chr2R_9086479_9086689;chr2R_9086375_9086420 9.09 NA 0.00 0.00 NA NA NA NA 16.67 NA NA NA NA NA 11.11 40.00 NA NA NA 20.00 NA NA NA NA NA 11.11 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 9.09 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K alternative_donor cul-2,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21661637_21662083 chr2L_21662021_21662083 chr2L_21662084_21662183;chr2L_21661537_21661636 1.75 2.56 2.44 5.68 0.00 0.00 2.78 1.75 0.79 0.00 3.33 3.41 12.77 2.13 0.00 3.12 0.00 0.00 0.00 0.00 0.00 4.35 0.97 2.04 0.00 0.00 2.27 2.67 3.33 1.85 5.26 0.00 0.00 1.06 0.00 1.69 2.78 0.00 0.00 3.39 1.54 2.47 2.50 0.00 0.00 3.03 2.70 0.00 2.53 3.77 1.56 2.17 0.00 0.00 2.17 2.38 0.00 1.75 K jcn_only_AD nuf,RI_chr3L_14222180_14223121,RI_chr3L_14209985_14223275,I_chr3L_14224426_14225035 chr3L + chr3L_14206304_14223275;chr3L_14219504_14223275 chr3L_14223207_14223275 chr3L_14223276_14223369 7.79 0.00 NA NA NA NA NA 7.69 7.69 4.55 NA 12.00 NA NA 9.52 NA NA NA NA 9.09 NA 6.67 3.77 9.09 14.29 NA 7.89 21.74 2.33 0.00 16.00 NA 8.00 NA NA NA 8.93 2.86 7.69 25.58 4.17 3.23 NA 5.00 NA 3.12 4.55 5.00 22.22 20.93 9.68 6.25 25.00 19.05 NA 11.11 7.50 9.52 K jcn_only_AA SelR,I_chr3R_6694098_6694160 chr3R - chr3R_6692683_6694160;chr3R_6692717_6694160 chr3R_6694060_6694160 chr3R_6694161_6694260 3.70 0.00 2.86 3.85 2.78 7.69 14.71 1.96 9.41 NA 4.35 3.28 3.70 3.12 5.36 4.55 0.00 16.67 2.86 9.23 3.85 NA 7.50 2.33 NA 2.94 7.32 NA NA 4.55 14.71 NA 14.29 3.70 3.45 0.00 0.00 3.70 0.00 0.00 NA 4.11 3.85 NA 3.85 4.17 4.65 NA 5.41 2.00 3.70 0.00 1.92 2.33 8.33 2.63 3.06 4.76 K intron_retention CG14230 chrX + chrX_19598973_19599038 chrX_19598972_19598973;chrX_19599038_19599039 chrX_19598683_19598972;chrX_19599039_19600146 4.17 0.00 0.00 23.08 0.00 0.00 13.16 11.76 4.48 0.00 0.00 0.00 0.00 4.76 5.88 0.00 0.00 0.00 0.00 6.98 4.55 21.79 5.88 5.26 6.67 12.00 8.62 6.56 2.50 7.81 4.17 5.88 3.31 2.17 8.33 7.84 2.67 3.92 5.48 10.75 8.08 4.48 0.00 11.11 3.30 2.50 3.03 4.26 4.62 3.39 3.45 0.00 0.00 2.33 5.88 4.48 0.00 1.76 N cassette Hcs,I_chr3R_1303481_1304607 chr3R + chr3R_1301523_1302262 chr3R_1301523_1302027;chr3R_1302041_1302262 chr3R_1302028_1302040 chr3R_1301185_1301522;chr3R_1302263_1303269 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA 53.85 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention I_chr3L_1494947_1496080,pUf68,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499880_1501350 chr3L_1499879_1499880;chr3L_1501350_1501351 chr3L_1499780_1499879;chr3L_1501351_1501397 100.00 NA NA NA NA NA NA 92.31 100.00 NA 100.00 94.12 92.86 100.00 NA 100.00 100.00 NA 100.00 95.00 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA 100.00 87.50 NA 88.89 NA NA 94.12 NA NA NA 91.67 NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 87.50 NA NA K jcn_only_AA CG32344,RI_chr3L_321550_321914,I_chr3L_326540_326703,RI_chr3L_326725_326866 chr3L - chr3L_321361_321914;chr3L_321364_321914 chr3L_321550_321914 chr3L_321915_322014;chr3L_321242_321360 6.45 0.00 3.33 36.00 NA 2.56 27.27 2.00 0.00 NA 4.55 6.45 6.25 2.94 1.85 5.17 NA 0.00 12.50 2.00 10.71 13.64 14.81 5.13 NA 6.45 2.78 NA NA 14.29 8.11 6.45 6.67 7.84 3.33 NA NA 5.00 12.00 13.16 11.11 3.70 6.25 NA 8.11 2.63 8.82 2.38 13.56 11.76 2.50 10.00 15.38 3.70 6.98 4.26 14.67 11.70 K alternative_donor Keap1 chr3R - chr3R_12902616_12905144;chr3R_12902616_12905594 chr3R_12902616_12905148 chr3R_12902299_12902615;chr3R_12905595_12905636 0.00 NA NA NA NA NA 12.50 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 11.11 NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA 9.09 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 K alternative_acceptor RpL12,I_chr2R_19948517_19948655,RI_chr2R_19948517_19948677,I_chr2R_19948517_19948682 chr2R + chr2R_19948517_19948682;chr2R_19948517_19948677;chr2R_19948517_19948655 chr2R_19948517_19948672 chr2R_19948417_19948516;chr2R_19948683_19948755 99.91 99.91 100.00 99.96 99.93 99.81 99.90 99.91 99.97 99.76 99.88 99.90 100.00 100.00 99.95 99.95 100.00 99.94 99.87 99.93 100.00 99.76 99.75 99.90 99.82 100.00 99.85 99.58 99.61 99.92 99.66 99.92 99.90 99.91 99.76 99.92 99.78 99.94 99.89 99.95 99.84 99.97 99.92 99.94 99.67 99.76 99.91 99.78 99.94 99.94 99.95 99.92 99.92 99.84 99.90 99.96 99.74 99.81 K alternative_acceptor CG5630 chr3R + chr3R_16752700_16754401 chr3R_16752700_16752909 chr3R_16752493_16752699;chr3R_16754402_16754407 98.72 100.00 100.00 64.41 96.67 95.38 97.75 100.00 99.39 100.00 98.15 97.69 98.72 100.00 98.90 97.46 97.70 98.73 98.92 98.28 96.43 99.05 97.46 98.96 98.11 98.11 98.67 98.53 100.00 98.39 99.03 98.68 100.00 99.12 100.00 98.48 98.23 98.85 99.02 99.24 93.51 97.66 98.44 99.12 99.24 98.46 99.05 99.09 98.82 98.48 95.70 100.00 99.21 96.70 97.03 98.18 99.58 99.01 K jcn_only_AD CG10417,RI_chr2R_1248452_1248523 chr2R - chr2R_1250261_1250567 chr2R_1250261_1250334 chr2R_1250133_1250260;chr2R_1250568_1250611 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.48 99.43 100.00 100.00 100.00 100.00 100.00 100.00 99.37 100.00 100.00 100.00 99.29 97.92 100.00 100.00 100.00 100.00 97.78 100.00 100.00 NA 100.00 98.80 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 99.11 100.00 100.00 NA 100.00 100.00 NA 99.32 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention mthl5 chr3R - chr3R_7710846_7710902 chr3R_7710845_7710846;chr3R_7710902_7710903 chr3R_7710664_7710845;chr3R_7710903_7711073 0.00 0.00 4.55 0.00 NA 0.00 5.88 0.00 0.00 NA NA 0.00 NA 5.00 0.00 4.55 NA 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.92 0.00 NA 0.00 0.00 0.00 0.00 0.00 6.06 5.26 NA 0.00 0.00 0.00 0.00 7.50 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 K intron_retention I_chr2L_10264634_10264770,Mob3,RI_chr2L_10265562_10265628 chr2L + chr2L_10265772_10265826 chr2L_10265771_10265772;chr2L_10265826_10265827 chr2L_10265629_10265771;chr2L_10265827_10265950 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 1.82 NA 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 2.38 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6499324_6499419 chr2R_6499323_6499324;chr2R_6499419_6499420 chr2R_6499185_6499323;chr2R_6499420_6499787 0.00 0.00 0.00 0.00 1.35 0.00 2.33 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention aur chr3R + chr3R_7789128_7789191 chr3R_7789127_7789128;chr3R_7789191_7789192 chr3R_7788906_7789127;chr3R_7789192_7789492 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 4.00 NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA K intron_retention Tango13,I_chrX_13480088_13480998,I_chrX_13483861_13483954 chrX + chrX_13480088_13480998 chrX_13480087_13480088;chrX_13480998_13480999 chrX_13479988_13480087;chrX_13480999_13481037 47.91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA 62.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention eater chr3R - chr3R_22921702_22921756 chr3R_22921701_22921702;chr3R_22921756_22921757 chr3R_22921591_22921701;chr3R_22921757_22921891 1.08 1.28 0.00 3.70 0.00 3.39 2.08 3.17 2.88 0.00 0.00 2.08 1.18 3.05 0.00 5.44 0.00 0.00 0.00 2.20 1.75 0.00 0.00 2.27 0.00 2.70 3.39 10.53 0.00 6.25 4.71 1.85 0.00 3.40 0.00 8.11 0.00 0.00 2.70 0.00 2.13 1.82 0.99 0.00 0.00 1.09 0.00 0.00 2.31 0.89 2.63 0.00 0.00 0.00 0.00 2.47 1.08 0.00 K alternative_donor osa,I_chr3R_13542657_13542834,I_chr3R_13542657_13543500,I_chr3R_13542657_13543662,I_chr3R_13542657_13543668 chr3R - chr3R_13542657_13543968;chr3R_13542657_13543662;chr3R_13542657_13542834;chr3R_13542657_13543668;chr3R_13542657_13543677 chr3R_13542657_13543500 chr3R_13542557_13542656;chr3R_13543969_13544017 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.91 0.00 1.89 0.00 0.76 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.70 0.00 0.00 0.00 1.39 0.00 1.75 1.23 0.00 0.00 1.14 1.69 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG10353,I_chrX_11773365_11773426,I_chrX_11775936_11778830,I_chrX_11778617_11778830,RI_chrX_11780885_11780988 chrX - chrX_11773365_11773430 chrX_11773365_11773426 chrX_11773265_11773364;chrX_11773431_11773524 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.55 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 1.84 0.00 0.63 0.00 1.03 0.85 0.00 0.00 0.00 1.18 0.00 1.05 1.30 0.00 0.00 1.39 0.00 0.61 1.15 1.25 0.00 1.32 0.00 0.73 0.74 0.00 0.00 0.59 0.00 0.00 0.00 1.22 1.08 0.84 0.00 0.00 0.00 N multi_cassette CG31619,I_chr2L_21725446_21728027 chr2L + chr2L_21719644_21728027 chr2L_21719644_21727005;chr2L_21727363_21727422;chr2L_21727574_21728027 chr2L_21727006_21727362;chr2L_21727423_21727573 chr2L_21719514_21719643;chr2L_21728028_21728127 100.00 100.00 100.00 80.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG31919,CG33995,F_chr2L_5045484_5046146 chr2L + chr2L_5047480_5047542 chr2L_5047479_5047480;chr2L_5047542_5047543 chr2L_5047273_5047479;chr2L_5047543_5048366 5.58 4.79 3.38 8.46 3.81 3.57 10.99 2.48 5.45 10.14 7.69 4.49 8.75 6.02 3.05 4.69 4.00 5.04 4.67 5.06 6.12 7.07 6.58 6.57 13.24 9.63 17.65 22.28 22.36 4.83 7.19 3.25 7.39 5.58 6.47 15.17 5.88 6.86 5.45 4.02 10.08 4.51 4.27 5.13 9.80 4.71 2.86 6.67 6.76 6.70 4.78 5.32 7.37 4.08 3.64 4.40 5.41 7.37 K intron_retention kuz,F_chr2L_13635998_13637287,I_chr2L_13636762_13637287 chr2L + chr2L_13636762_13637287 chr2L_13636761_13636762;chr2L_13637287_13637288 chr2L_13636662_13636761;chr2L_13637288_13637387 82.35 85.71 71.43 91.09 100.00 73.33 88.64 91.67 83.93 88.89 78.57 76.07 84.62 80.77 87.10 88.00 95.24 79.07 86.96 80.56 70.73 86.79 55.56 76.19 61.90 79.59 70.37 82.14 79.59 85.37 81.08 85.19 63.10 88.24 94.12 73.33 66.67 55.56 75.00 85.71 75.00 82.93 83.33 86.67 82.50 82.35 63.64 84.88 89.74 65.00 72.22 91.67 68.42 NA 95.45 92.31 82.35 79.07 K intron_retention Cnx99A,I_chr3R_25143234_25143790,I_chr3R_25144335_25145173,I_chr3R_25145243_25145309,I_chr3R_25145256_25145426 chr3R - chr3R_25143692_25143790 chr3R_25143691_25143692;chr3R_25143790_25143791 chr3R_25143558_25143691;chr3R_25143791_25143853 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CaMKI,I_chr4_467862_471815,I_chr4_470923_470996,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_467862_470867 chr4_467861_467862;chr4_470867_470868 chr4_467762_467861;chr4_470868_470922 0.00 NA NA 0.00 NA NA 0.00 0.00 2.78 NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 3.45 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_donor I_chr2L_11009331_11009442,dUTPase,I_chr2L_11011380_11011453 chr2L + chr2L_11011419_11011471;chr2L_11011380_11011471 chr2L_11011394_11011471 chr2L_11011472_11011553;chr2L_11011335_11011379 4.40 1.96 4.38 5.00 2.74 3.88 5.16 3.48 4.00 4.40 4.59 6.09 3.31 5.74 6.10 4.07 3.77 5.38 8.67 8.14 2.33 1.33 5.05 4.55 6.12 15.08 4.48 6.25 9.80 2.38 6.19 4.48 11.90 6.11 4.08 4.55 1.96 1.79 1.43 3.09 14.29 1.74 8.80 6.38 3.09 2.38 1.09 7.69 6.94 2.44 3.70 3.61 3.16 1.35 3.25 4.55 3.26 10.14 K jcn_only_AD D1,RI_chr3R_5065631_5065691,I_chr3R_5065631_5065695,I_chr3R_5065631_5065697 chr3R - chr3R_5065631_5065767;chr3R_5065631_5065697;chr3R_5065631_5065691 chr3R_5065631_5065695 chr3R_5065531_5065630;chr3R_5065768_5065790 19.05 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA 19.05 NA NA NA NA NA NA NA NA NA 25.00 K intron_retention CG1553 chr2R - chr2R_3689624_3689685 chr2R_3689623_3689624;chr2R_3689685_3689686 chr2R_3689491_3689623;chr2R_3689686_3690705 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 2.50 0.00 0.00 1.96 0.00 0.00 0.00 0.00 2.11 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ste14 chr3L + chr3L_13012160_13012287 chr3L_13012159_13012160;chr3L_13012287_13012288 chr3L_13011788_13012159;chr3L_13012288_13013008 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 2.53 4.17 0.00 0.00 0.00 0.00 2.63 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD rdgB chrX + chrX_13666690_13666818 chrX_13666729_13666818 chrX_13666819_13667786;chrX_13666591_13666689 100.00 NA 100.00 NA NA 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 98.08 NA 97.73 100.00 100.00 100.00 100.00 100.00 NA NA NA NA NA NA 100.00 NA NA 96.15 100.00 100.00 100.00 NA 100.00 NA NA NA NA NA NA 100.00 100.00 100.00 NA NA NA 100.00 NA 100.00 NA K intron_retention ens,I_chr3L_4130719_4131120 chr3L - chr3L_4127163_4131120 chr3L_4127162_4127163;chr3L_4131120_4131121 chr3L_4126989_4127162;chr3L_4131121_4131220 11.76 11.76 NA 7.69 NA NA 10.00 20.83 15.79 16.00 30.77 46.15 0.00 22.22 10.53 7.14 NA 4.35 7.69 63.64 0.00 9.76 10.71 13.79 20.00 0.00 3.45 7.41 13.73 13.64 8.00 NA 13.46 21.43 13.79 22.22 18.75 14.29 15.38 13.79 5.56 10.87 5.88 7.41 0.00 9.09 NA 24.32 10.34 4.76 19.35 NA NA NA 13.33 11.76 NA 12.50 K intron_retention CG8531,RI_chr2R_10144869_10144912 chr2R + chr2R_10145224_10145276 chr2R_10145223_10145224;chr2R_10145276_10145277 chr2R_10144926_10145223;chr2R_10145277_10145393 4.40 4.48 3.75 4.04 0.00 0.00 2.78 7.25 5.66 5.41 3.03 5.79 2.99 3.77 3.33 7.76 7.35 3.28 4.40 1.36 1.30 16.22 10.14 6.94 4.65 2.20 8.91 1.54 6.82 13.64 2.47 5.26 5.77 5.26 2.38 10.26 5.77 0.00 3.39 7.58 6.45 3.66 3.45 3.57 5.71 3.33 0.00 10.00 6.14 6.10 6.76 0.00 2.94 5.36 2.60 6.25 2.25 2.63 K intron_retention CG3114,RI_chrX_168562_168685 chrX - chrX_166917_167215 chrX_166916_166917;chrX_167215_167216 chrX_166654_166916;chrX_167216_167420 50.00 NA NA NA NA NA NA NA 52.94 NA NA NA NA NA NA 25.00 NA NA NA 40.00 NA NA 20.00 NA NA NA NA NA NA NA NA NA 20.00 63.64 NA NA NA NA 45.45 63.64 NA 57.14 NA NA NA NA NA NA 60.00 NA 50.00 NA NA NA NA NA NA NA K cassette CG5174,F_chr2R_14309059_14311473 chr2R + chr2R_14312172_14312844;chr2R_14311992_14312844 chr2R_14312172_14312376,chr2R_14311992_14312376;chr2R_14312540_14312844 chr2R_14312377_14312539 chr2R_14311831_14311991;chr2R_14312845_14312913 100.00 100.00 99.35 100.00 100.00 99.26 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.17 99.03 100.00 100.00 100.00 100.00 98.81 100.00 98.90 100.00 100.00 100.00 99.03 100.00 100.00 100.00 100.00 100.00 100.00 99.45 100.00 100.00 100.00 100.00 99.09 100.00 99.27 100.00 100.00 100.00 100.00 100.00 100.00 99.15 100.00 100.00 99.44 100.00 K alternative_acceptor CG10267 chr3R + chr3R_2282879_2282999 chr3R_2282879_2282938 chr3R_2282810_2282878;chr3R_2283000_2283152 96.43 93.75 93.33 95.45 100.00 92.31 100.00 94.44 96.88 100.00 90.00 95.83 92.31 100.00 100.00 100.00 100.00 100.00 93.33 100.00 80.00 100.00 95.24 100.00 100.00 92.86 100.00 92.86 90.91 100.00 91.67 100.00 100.00 94.12 91.67 94.74 93.75 90.91 91.67 97.30 100.00 96.43 90.91 100.00 93.75 100.00 100.00 93.75 88.46 100.00 95.45 100.00 100.00 100.00 95.00 100.00 96.15 97.22 K jcn_only_AD sav chr3R - chr3R_18885706_18886108 chr3R_18885706_18886093 chr3R_18884752_18885705;chr3R_18886109_18886988 83.78 86.96 NA NA NA NA NA NA 83.33 NA NA 85.71 NA NA NA NA NA NA NA 81.58 NA 80.77 96.77 82.93 NA NA 90.48 NA 82.35 79.31 NA NA NA NA NA NA 90.70 83.78 88.46 82.76 NA 76.19 NA 90.00 78.57 100.00 86.36 NA NA 91.30 78.26 NA NA 85.19 NA NA 81.25 NA K intron_retention Thor,I_chr2L_3479106_3479184 chr2L + chr2L_3478761_3479184 chr2L_3478760_3478761;chr2L_3479184_3479185 chr2L_3478359_3478760;chr2L_3479185_3479284 1.70 0.52 2.15 2.40 1.17 1.68 2.75 2.90 2.05 1.46 1.26 2.82 3.08 2.00 2.89 3.49 1.54 1.37 2.29 1.23 2.11 1.61 1.22 1.52 1.37 1.65 1.53 3.64 3.96 1.11 1.69 1.40 1.06 1.83 2.74 2.20 1.53 0.80 1.30 1.24 1.44 2.51 2.07 0.75 2.18 2.50 2.11 1.70 1.91 1.88 2.22 1.71 1.01 2.68 1.28 1.80 1.11 1.34 K alternative_donor RpL10Ab chr3L + chr3L_11816530_11816757;chr3L_11816666_11816757 chr3L_11816456_11816757 chr3L_11816758_11817314;chr3L_11816300_11816455 98.64 98.52 99.08 98.90 98.82 99.00 98.60 98.83 98.81 97.42 98.75 98.80 98.77 98.74 98.98 99.08 98.71 99.03 98.79 99.06 99.02 97.25 97.90 98.17 97.98 99.04 98.13 95.58 98.38 97.86 95.67 98.56 97.99 98.84 98.55 98.61 97.67 97.97 98.58 98.77 98.19 98.86 98.97 97.48 98.64 98.70 98.38 98.93 97.92 97.80 97.53 97.16 98.93 98.74 99.01 97.96 98.61 99.22 K jcn_only_AD CG10277,I_chr3R_2211644_2211724,I_chr3R_2211939_2212057 chr3R + chr3R_2211644_2211724 chr3R_2211664_2211724 chr3R_2211725_2211824;chr3R_2211544_2211643 97.17 97.07 94.39 94.37 99.11 97.09 98.24 98.13 98.21 98.15 98.32 98.76 95.35 96.52 99.17 99.33 98.06 97.39 97.58 96.43 100.00 96.90 96.55 97.03 95.68 96.36 97.22 94.12 90.00 95.95 89.82 98.91 96.08 96.57 92.59 94.71 98.51 98.19 98.55 98.31 98.55 96.98 97.17 95.85 98.96 98.02 99.02 97.20 95.98 95.27 95.91 96.03 95.19 97.18 98.58 98.73 98.52 92.77 K cassette vir-1,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,I_chr2L_12421830_12423260 chr2L - chr2L_12407735_12421640 chr2L_12407735_12409455;chr2L_12409624_12421640 chr2L_12409456_12409623 chr2L_12407550_12407734;chr2L_12421641_12421740 100.00 100.00 99.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.94 99.95 100.00 100.00 100.00 100.00 100.00 100.00 99.94 100.00 100.00 100.00 99.95 99.96 100.00 100.00 100.00 100.00 100.00 100.00 99.96 100.00 100.00 100.00 100.00 100.00 100.00 99.90 100.00 100.00 99.95 100.00 100.00 100.00 99.82 100.00 100.00 100.00 99.93 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Atg18,I_chr3L_8182683_8182941 chr3L + chr3L_8180294_8180540;chr3L_8180294_8180586 chr3L_8180294_8180578 chr3L_8180118_8180293;chr3L_8180587_8180676 92.00 91.43 90.00 87.93 96.30 93.33 80.49 94.34 94.29 88.24 92.59 91.38 96.55 90.00 95.45 94.74 93.75 90.00 94.29 90.48 94.29 84.21 93.10 93.48 89.19 92.50 89.36 87.50 88.89 92.50 92.00 95.00 93.22 97.78 90.00 74.42 93.33 95.74 94.00 86.21 83.33 91.18 92.00 92.86 89.74 87.88 97.37 89.47 93.65 91.43 87.76 91.30 83.87 90.91 92.16 87.88 93.48 97.22 K jcn_only_AA Edem1,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1798310_1798525 chrX_1798315_1798525 chrX_1798526_1798625;chrX_1798215_1798309 98.36 100.00 100.00 98.25 97.78 100.00 100.00 98.46 99.01 96.00 97.83 98.06 97.67 100.00 100.00 100.00 97.92 100.00 98.00 98.36 98.25 96.88 97.70 96.88 100.00 97.78 94.59 96.15 100.00 96.08 100.00 100.00 100.00 98.44 96.88 98.15 98.73 100.00 97.06 99.02 100.00 97.73 100.00 100.00 100.00 100.00 98.23 91.43 97.73 100.00 98.57 100.00 100.00 97.59 98.36 97.44 97.73 97.56 K jcn_only_AD CG8080,REI_chr2R_4979159_4979234,I_chr2R_4979276_4979936 chr2R - chr2R_4979159_4979936 chr2R_4979159_4979234 chr2R_4979059_4979158;chr2R_4979937_4980036 4.55 6.45 NA 4.35 17.39 7.69 NA 3.70 6.45 NA NA 2.70 NA 3.57 3.33 2.13 0.00 10.00 0.00 4.55 NA NA 6.90 2.50 NA NA 9.52 NA NA NA 0.00 NA 6.90 5.13 NA NA 14.29 0.00 5.00 7.32 NA 0.00 0.00 8.33 NA 0.00 NA 16.67 5.00 11.11 2.86 7.14 NA NA 7.50 0.00 0.00 0.00 K intron_retention dare chr2R - chr2R_7179924_7180310 chr2R_7179923_7179924;chr2R_7180310_7180311 chr2R_7179551_7179923;chr2R_7180311_7180611 41.42 31.25 58.82 45.83 36.84 42.86 43.48 22.22 33.33 22.22 26.32 35.71 NA 41.18 41.67 77.78 44.44 29.17 26.09 31.58 40.00 66.67 55.26 45.00 57.14 21.05 55.56 36.84 39.13 50.00 75.44 42.31 56.67 51.85 61.54 42.42 42.00 47.37 35.71 40.48 16.67 35.71 35.00 50.00 33.33 42.31 48.15 39.13 42.55 46.15 36.84 32.00 35.00 40.62 36.84 41.18 51.85 44.00 K jcn_only_AA rin,I_chr3R_9476825_9476895 chr3R + chr3R_9472923_9474639;chr3R_9472923_9473143 chr3R_9472923_9473104 chr3R_9472709_9472922 55.09 56.60 57.00 22.73 40.13 52.66 64.00 66.24 57.69 54.72 51.89 69.75 67.25 62.61 56.12 61.87 56.27 39.08 63.73 59.06 55.56 59.81 46.96 34.48 45.00 56.00 21.09 29.60 23.21 40.00 63.32 56.52 59.17 62.60 41.94 32.69 34.15 39.17 35.71 61.38 52.94 60.56 68.14 46.21 45.31 NA 42.39 55.45 58.82 47.30 45.35 51.58 40.00 37.21 65.50 63.08 47.22 66.67 K intron_retention alt,CG31251,CG31249 chr3R - chr3R_13510410_13510466 chr3R_13510409_13510410;chr3R_13510466_13510467 chr3R_13509877_13510409;chr3R_13510467_13510598 0.00 NA NA 4.55 NA NA 0.00 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 13.33 NA NA 0.00 NA NA NA NA NA NA NA 5.88 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 0.00 7.41 K cassette Xrp1,I_chr3R_14741648_14750799,I_chr3R_14750298_14750799 chr3R + chr3R_14741648_14750799;chr3R_14744348_14750799 chr3R_14744348_14745144,chr3R_14741648_14745144;chr3R_14745235_14750799 chr3R_14745145_14745234 chr3R_14741548_14741647;chr3R_14750800_14750899 97.76 98.59 98.68 96.88 96.00 100.00 89.76 98.63 95.54 97.78 94.92 98.54 100.00 97.22 98.68 96.92 98.39 98.15 97.67 97.14 98.04 99.45 97.84 97.87 94.68 94.12 96.73 96.18 73.00 98.72 99.05 100.00 98.90 98.57 98.86 94.38 98.39 98.04 98.59 97.50 92.22 97.24 98.46 98.23 92.11 93.75 98.11 98.68 97.76 96.33 97.69 96.34 96.43 97.73 97.73 98.57 97.10 95.92 K intron_retention RecQ4,Nmt chr3L - chr3L_8168802_8168854 chr3L_8168801_8168802;chr3L_8168854_8168855 chr3L_8168617_8168801;chr3L_8168855_8169027 0.00 NA 0.00 4.17 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 5.00 0.00 NA 0.00 2.13 0.00 NA NA 0.00 NA 0.00 7.69 NA 30.77 NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 K intron_retention drpr,I_chr3L_1718097_1718705,I_chr3L_1718154_1723579,I_chr3L_1720385_1723579,CG18171 chr3L - chr3L_1718097_1723579 chr3L_1718096_1718097;chr3L_1723579_1723580 chr3L_1718054_1718096;chr3L_1723580_1723679 95.35 94.67 90.77 83.23 92.54 97.10 97.03 95.08 94.97 96.97 94.34 95.83 96.34 98.25 98.63 94.81 98.36 98.25 93.55 97.28 98.08 94.96 90.14 96.43 92.11 90.79 96.08 97.06 91.30 92.59 95.51 95.35 97.40 94.64 97.14 95.00 92.98 93.62 95.92 93.52 97.50 96.20 95.38 98.46 90.38 98.46 91.67 92.63 91.95 96.77 93.10 97.22 85.29 100.00 96.63 97.62 93.10 92.31 K alternative_acceptor CG11006,F_chr3L_12799159_12799339 chr3L + chr3L_12804689_12804777;chr3L_12804689_12804774 chr3L_12804689_12804747 chr3L_12803828_12804688;chr3L_12804778_12804986 60.00 44.00 61.90 76.00 54.55 42.86 56.52 62.96 63.89 53.33 64.29 58.33 78.95 60.00 70.00 68.18 61.54 60.00 63.16 56.41 45.00 69.70 64.00 64.71 75.00 75.00 59.09 66.67 54.17 51.85 55.00 50.00 61.54 84.00 86.67 70.59 58.82 58.82 52.63 56.76 61.11 60.00 61.54 48.39 64.00 52.00 52.17 57.50 83.33 56.76 48.00 88.89 63.64 44.44 60.00 65.38 64.00 57.89 K mutually_exclusive Pvr,I_chr2L_8226604_8228082,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8226604_8228082,chr2L_8228258_8228493 chr2L_8226604_8227651,chr2L_8227827_8228493 chr2L_8228083_8228257 chr2L_8227652_8227826 chr2L_8226504_8226603;chr2L_8228494_8229011 14.29 37.50 14.29 0.00 14.29 0.00 25.00 25.00 20.00 0.00 0.00 30.77 14.29 0.00 0.00 0.00 0.00 NA 14.29 8.33 0.00 NA 16.67 0.00 NA 37.50 20.00 NA NA 20.00 NA NA NA 28.57 NA 16.67 12.50 NA 14.29 0.00 NA 28.57 NA 16.67 NA 0.00 NA NA 25.00 50.00 33.33 NA NA NA 0.00 0.00 NA NA K intron_retention Aats-ala chr2L - chr2L_8381453_8381510 chr2L_8381452_8381453;chr2L_8381510_8381511 chr2L_8380448_8381452;chr2L_8381511_8381548 36.36 NA NA 14.29 NA NA 32.00 20.00 NA NA NA 28.57 NA NA NA NA NA NA NA 38.89 NA 70.00 36.36 NA NA NA NA 60.00 57.14 NA 25.00 NA NA 36.36 NA 86.67 NA NA 41.67 36.36 NA 28.57 NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA K intron_retention CG7546 chr3L + chr3L_7506722_7506917 chr3L_7506721_7506722;chr3L_7506917_7506918 chr3L_7506623_7506721;chr3L_7506918_7507454 50.00 NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG32687,I_chrX_10377592_10378408 chrX - chrX_10377592_10379743 chrX_10377592_10378408 chrX_10377492_10377591;chrX_10379744_10380660 0.00 0.00 0.00 3.70 NA NA 4.76 3.57 2.27 NA NA 0.00 9.52 0.00 3.85 5.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 NA NA NA 0.00 NA NA 0.00 NA 0.00 2.63 NA 0.00 2.27 0.00 0.00 0.00 NA 0.00 NA 3.45 0.00 0.00 0.00 0.00 2.70 9.68 3.45 NA 0.00 0.00 0.00 NA 4.92 0.00 K intron_retention CG8097,CG8105 chrX + chrX_15478232_15478356 chrX_15478231_15478232;chrX_15478356_15478357 chrX_15477227_15478231;chrX_15478357_15478672 0.00 0.00 NA 14.29 NA NA NA 5.00 4.17 NA NA 6.67 NA NA NA NA 0.00 NA 0.00 0.00 NA 5.88 NA 5.56 NA NA NA NA NA NA 0.00 NA NA 4.35 NA NA 0.00 NA 0.00 0.00 NA 4.76 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA K jcn_only_AA Vap-33-1 chrX + chrX_3843406_3843520;chrX_3843406_3843513 chrX_3843406_3845447 chrX_3843337_3843405 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor klar,I_chr3L_454406_454553,I_chr3L_462559_472609,RI_chr3L_517594_539898 chr3L - chr3L_454406_462180 chr3L_454406_454553 chr3L_454306_454405;chr3L_462181_462558 0.55 0.50 1.37 0.32 0.63 0.43 0.72 0.56 0.65 1.35 0.53 0.51 0.52 0.50 0.50 1.12 0.53 0.49 0.45 0.47 1.04 0.99 0.37 0.40 0.60 1.43 0.82 2.15 0.51 0.65 0.40 0.76 0.43 0.57 0.55 1.32 0.41 0.51 0.30 0.60 0.60 0.72 0.62 0.61 0.00 0.43 0.00 0.76 0.73 0.52 0.62 0.76 0.00 0.00 0.84 0.00 0.00 0.63 K intron_retention Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8105810_8106839 chr2L_8105809_8105810;chr2L_8106839_8106840 chr2L_8105697_8105809;chr2L_8106840_8107000 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG40228,noncoding_14406,RI_chr3LHet_2190419_2190470 chr3LHet - chr3LHet_2190419_2190563 chr3LHet_2190418_2190419;chr3LHet_2190563_2190564 chr3LHet_2190319_2190418;chr3LHet_2190564_2190570 60.00 50.00 46.15 57.58 NA 80.00 71.88 60.00 78.26 NA NA 56.00 73.33 50.00 53.85 54.72 NA 41.67 76.92 70.83 NA NA 69.23 66.67 NA 45.45 57.14 75.00 NA NA 54.55 60.00 NA 71.88 53.85 63.64 80.00 NA NA 75.00 78.26 55.00 66.67 78.57 50.00 50.00 64.71 50.00 53.66 63.16 52.38 87.50 58.33 66.67 53.33 50.00 71.43 66.67 K jcn_only_AA CG32016,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_974433_974645 chr4_974526_974645 chr4_974646_974852;chr4_974139_974432 98.32 91.80 96.15 96.24 100.00 97.78 98.04 98.25 96.32 96.43 100.00 97.46 100.00 98.84 100.00 99.34 98.82 98.15 100.00 99.22 100.00 98.39 95.52 100.00 94.29 100.00 93.33 96.67 95.56 100.00 98.82 95.00 96.10 99.35 100.00 92.73 NA 96.43 94.12 98.66 100.00 97.83 100.00 100.00 93.02 98.39 96.97 98.67 99.35 93.85 98.41 93.75 100.00 100.00 99.04 95.83 97.92 96.77 K intron_retention CG10990,noncoding_23570 chrX - chrX_13640882_13644348 chrX_13640881_13640882;chrX_13644348_13644349 chrX_13640511_13640881;chrX_13644349_13644488 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG30438 chr2R + chr2R_1436281_1436332 chr2R_1436280_1436281;chr2R_1436332_1436333 chr2R_1435493_1436280;chr2R_1436333_1436567 0.00 NA 0.00 0.00 NA 0.00 0.00 4.76 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 3.85 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 NA K cassette RI_chrX_7172561_7252693,CG1677,I_chrX_7178792_7252693,RI_chrX_7179818_7179946 chrX - chrX_7178792_7179946 chrX_7178792_7179393;chrX_7179882_7179946 chrX_7179394_7179881 chrX_7178692_7178791;chrX_7179947_7180046 11.90 8.33 10.00 26.67 5.00 8.11 17.74 24.14 13.54 4.65 5.26 13.92 17.14 28.57 8.62 22.64 12.12 10.53 14.29 10.53 5.56 7.89 10.26 9.46 10.81 8.33 8.45 17.65 16.67 9.84 25.00 23.53 22.22 17.39 13.95 23.08 3.12 6.76 4.94 22.22 30.43 11.25 16.67 15.38 15.62 18.60 5.45 38.71 11.90 9.43 12.00 8.89 5.26 5.00 12.73 8.33 3.92 28.12 K intron_retention CG11141,p47,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3349849_3349916 chr2R_3349848_3349849;chr2R_3349916_3349917 chr2R_3348761_3349848;chr2R_3349917_3350201 1.64 2.78 1.01 7.56 0.00 0.00 0.00 2.61 2.65 0.00 0.00 4.19 3.17 5.00 2.90 3.60 2.63 1.33 4.29 1.82 0.00 2.50 2.63 1.69 3.03 3.28 6.04 7.06 0.69 0.78 5.26 0.00 0.82 3.25 3.54 2.88 2.05 1.61 1.64 0.00 3.42 0.94 0.00 1.00 0.00 0.00 1.33 1.80 0.00 0.00 3.82 0.00 0.00 1.64 2.50 0.00 0.00 0.00 K intron_retention CG6512 chr3L - chr3L_17233709_17233762 chr3L_17233708_17233709;chr3L_17233762_17233763 chr3L_17231832_17233708;chr3L_17233763_17234158 0.00 0.00 0.00 1.75 0.00 0.00 1.69 0.85 1.72 0.00 0.00 1.34 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 1.43 0.00 0.95 0.78 0.00 3.06 4.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 1.54 1.79 1.66 0.00 0.00 1.48 0.90 2.03 0.00 1.18 0.00 0.00 1.53 0.76 0.00 0.00 0.00 0.68 0.00 2.68 K alternative_acceptor CG30007 chr2R + chr2R_5782702_5782762 chr2R_5782702_5782759 chr2R_5782255_5782701;chr2R_5782763_5782990 72.73 NA NA 76.47 NA NA 66.67 61.54 63.16 NA NA 90.91 NA NA NA 72.73 NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA 45.45 NA NA 80.00 NA NA NA NA NA NA NA 73.33 NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA K intron_retention drongo,RI_chr2L_837379_837747,I_chr2L_837379_847733 chr2L - chr2L_837379_842613 chr2L_837378_837379;chr2L_842613_842614 chr2L_837279_837378;chr2L_842614_842629 12.70 NA NA NA NA NA NA NA 13.64 NA NA 25.00 NA NA NA NA NA NA NA NA NA 5.71 NA NA NA NA NA NA NA NA NA NA NA 15.38 NA NA 11.76 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG1840 chrX + chrX_11782687_11782748 chrX_11782690_11782748 chrX_11782749_11782814;chrX_11782621_11782686 98.28 95.00 100.00 96.63 100.00 100.00 100.00 95.92 100.00 96.77 96.67 98.96 97.44 97.83 97.26 98.84 97.78 97.50 100.00 96.95 100.00 90.48 98.15 100.00 98.15 100.00 98.33 94.74 100.00 100.00 100.00 94.64 97.44 98.55 98.21 95.45 100.00 97.37 96.55 96.88 100.00 100.00 97.56 100.00 98.18 95.65 100.00 100.00 98.92 97.73 98.48 100.00 98.28 98.11 98.57 100.00 100.00 97.40 K alternative_acceptor Df31,RE_chr2L_21628206_21629662,I_chr2L_21628206_21629666,I_chr2L_21628210_21628944,I_chr2L_21628210_21629216,EI_chr2L_21628210_21629715,REI_chr2L_21628210_21629884,I_chr2L_21628224_21629666,I_chr2L_21628734_21629666 chr2L - chr2L_21628210_21629666 chr2L_21628734_21629666 chr2L_21629667_21629762;chr2L_21628124_21628209 0.22 0.19 0.19 0.19 0.23 0.24 0.24 0.35 0.18 0.23 0.10 0.30 0.41 0.36 0.18 0.20 0.10 0.22 0.09 0.20 0.22 0.44 0.21 0.27 0.32 0.22 0.62 0.57 0.16 0.11 0.21 0.11 0.12 0.24 0.30 0.39 0.32 0.20 0.24 0.25 0.16 0.17 0.23 0.19 0.14 0.20 0.26 0.08 0.19 0.38 0.30 0.31 0.18 0.28 0.17 0.29 0.22 0.06 K jcn_only_AA CG4630,RI_chr2R_9103472_9103634,I_chr2R_9103765_9103852,I_chr2R_9103910_9104108,I_chr2R_9103956_9104108,RI_chr2R_9104206_9104265 chr2R - chr2R_9103910_9104108 chr2R_9103956_9104108 chr2R_9104109_9104202;chr2R_9103856_9103909 95.24 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA 95.24 95.00 NA NA NA 90.48 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Fem-1,RI_chr2R_16552969_16554423 chr2R - chr2R_16550601_16550664 chr2R_16550600_16550601;chr2R_16550664_16550665 chr2R_16550018_16550600;chr2R_16550665_16550891 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.43 0.00 0.00 0.00 0.00 0.00 1.56 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CREF_chr3R_5589662_5589762,CG8481 chr3R + chr3R_5594185_5594466;chr3R_5593863_5594466 chr3R_5594297_5594466 chr3R_5594467_5594493;chr3R_5593583_5593862 20.00 25.00 15.38 36.36 NA 28.57 20.00 23.08 20.00 NA 23.08 23.08 50.00 NA 25.00 20.00 NA NA 14.29 18.18 NA 63.16 25.00 11.11 NA NA NA 16.67 28.57 40.00 0.00 9.09 20.00 14.29 NA NA 18.18 16.67 11.11 33.33 20.00 20.00 NA 27.27 7.14 27.27 16.67 20.00 37.50 NA 22.22 0.00 NA NA 16.67 NA 14.29 33.33 K intron_retention unc-13,RI_chr4_892852_895828,RI_chr4_894198_895828,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_894553_894619 chr4_894552_894553;chr4_894619_894620 chr4_894261_894552;chr4_894620_894786 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Pka-R1,CG3288 chr3L + chr3L_20809272_20809666 chr3L_20809272_20809329 chr3L_20809261_20809271;chr3L_20809667_20809933 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 K jcn_only_AA CG5789,I_chr3R_20364666_20364713,I_chr3R_20367337_20369421 chr3R - chr3R_20364651_20364713 chr3R_20364666_20364713 chr3R_20364714_20364813;chr3R_20364566_20364650 0.00 1.56 0.00 0.95 0.00 0.00 0.79 0.88 0.75 0.00 0.00 0.85 0.00 1.75 1.16 1.04 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 1.33 2.27 0.00 0.00 0.00 2.68 0.00 0.00 1.60 2.63 0.00 0.00 0.00 0.00 0.00 0.00 1.63 0.00 0.00 0.00 0.00 2.56 0.00 0.68 2.56 1.37 0.00 0.00 0.00 0.91 2.86 0.00 0.00 K intron_retention CG8232 chr2R + chr2R_4816154_4816213 chr2R_4816153_4816154;chr2R_4816213_4816214 chr2R_4815963_4816153;chr2R_4816214_4816383 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention beta-Spec chrX + chrX_17551567_17555021 chrX_17551566_17551567;chrX_17555021_17555022 chrX_17551418_17551566;chrX_17555022_17561265 26.32 NA NA 26.92 NA NA 30.77 18.52 37.93 NA NA 29.03 15.38 14.29 20.00 21.88 NA NA 28.57 34.62 NA 20.00 30.77 NA NA 25.00 NA NA NA NA 26.32 NA NA 22.22 25.00 NA NA NA NA 7.14 NA 26.67 NA NA NA NA NA NA 36.84 NA NA NA NA NA 30.77 NA NA NA K jcn_only_AA MRP,I_chr2L_12724912_12725088,F_chr2L_12727117_12736035 chr2L + chr2L_12724912_12725711 chr2L_12724912_12725088 chr2L_12724812_12724911;chr2L_12725712_12725796 0.28 0.00 0.00 1.34 0.00 1.38 0.35 0.00 0.45 0.00 0.68 0.00 0.74 0.00 0.00 0.00 0.00 0.92 0.38 0.50 0.00 0.72 0.00 0.00 0.84 0.00 0.48 0.67 0.00 0.42 0.31 0.00 1.55 0.20 0.00 2.00 0.41 0.00 0.28 0.30 1.22 0.46 0.00 0.38 3.09 0.56 0.00 1.39 0.22 0.88 0.00 0.82 0.00 0.00 0.00 0.00 0.00 1.12 K cassette CG13124,RI_chr2L_9906444_9907607,RI_chr2L_9907784_9908405,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9906444_9907607 chr2L_9906444_9907050;chr2L_9907545_9907607 chr2L_9907051_9907544 chr2L_9906344_9906443;chr2L_9907608_9907707 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.00 100.00 100.00 100.00 99.00 100.00 100.00 100.00 98.91 100.00 100.00 100.00 100.00 100.00 100.00 98.92 100.00 100.00 100.00 100.00 100.00 95.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.82 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 K intron_retention CG32803,I_chrX_1795648_1795700,RI_chrX_1795648_1795745,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1795648_1795745 chrX_1795647_1795648;chrX_1795745_1795746 chrX_1795548_1795647;chrX_1795746_1795800 9.14 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 4.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA K intron_retention Atg12 chr3L + chr3L_12130192_12130258 chr3L_12130191_12130192;chr3L_12130258_12130259 chr3L_12129874_12130191;chr3L_12130259_12130395 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 5.71 0.00 NA 0.00 0.00 0.00 0.00 2.78 NA NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 4.35 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Pld,RI_chr2R_2138358_2141112 chr2R + chr2R_2138358_2138634 chr2R_2138358_2138580 chr2R_2138258_2138357;chr2R_2138635_2139357 100.00 100.00 100.00 100.00 NA 90.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA NA 90.91 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 95.00 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA K jcn_only_AA CG15118,I_chr2R_15024324_15024455 chr2R - chr2R_15023758_15023827 chr2R_15023761_15023827 chr2R_15023828_15024134;chr2R_15023444_15023757 98.78 97.14 100.00 98.78 100.00 92.50 100.00 96.34 99.31 100.00 100.00 94.81 96.08 100.00 100.00 96.43 95.83 100.00 97.87 97.56 100.00 99.24 97.17 100.00 100.00 100.00 98.08 98.89 97.40 100.00 97.87 100.00 98.39 100.00 100.00 98.55 99.42 97.06 99.03 98.77 98.31 98.04 100.00 97.30 97.83 98.72 95.83 98.33 94.74 100.00 97.53 100.00 100.00 100.00 100.00 98.81 98.15 96.34 K alternative_donor mei-P26 chrX + chrX_9057324_9059714 chrX_9057432_9059714 chrX_9059715_9060492;chrX_9057300_9057323 80.12 NA 66.67 76.92 NA NA 100.00 69.23 84.62 NA NA 72.73 NA NA 83.33 75.00 NA NA NA 88.89 NA 83.33 88.89 75.00 85.71 NA 100.00 NA NA NA NA NA 60.00 73.33 NA NA 83.33 NA NA NA NA 66.67 NA NA NA NA NA 36.84 68.75 NA 83.33 100.00 NA NA NA NA NA NA K intron_retention gem,I_chr2R_6015083_6015660,I_chr2R_6023182_6023246 chr2R + chr2R_6022905_6022972 chr2R_6022904_6022905;chr2R_6022972_6022973 chr2R_6022899_6022904;chr2R_6022973_6023177 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention eIF-4E,RI_chr3L_9394054_9394756,I_chr3L_9394308_9394756,RI_chr3L_9394468_9394631,I_chr3L_9394468_9394659,I_chr3L_9394468_9395155,I_chr3L_9394468_9395240,I_chr3L_9394468_9395446,I_chr3L_9394685_9394756,RI_chr3L_9394707_9395016,RI_chr3L_9394707_9395198,I_chr3L_9394707_9395309,I_chr3L_9394819_9394884,I_chr3L_9394819_9395016,I_chr3L_9394819_9395198,I_chr3L_9394819_9395379 chr3L - chr3L_9394468_9395446 chr3L_9394467_9394468;chr3L_9395446_9395447 chr3L_9394368_9394467;chr3L_9395447_9395479 99.27 100.00 100.00 100.00 100.00 100.00 99.11 100.00 99.35 100.00 100.00 100.00 100.00 98.33 98.11 99.17 98.11 97.56 98.44 98.56 100.00 95.28 100.00 100.00 100.00 100.00 99.15 98.86 100.00 98.72 98.39 97.87 100.00 98.88 98.75 98.99 98.80 100.00 100.00 100.00 100.00 99.07 100.00 98.65 98.48 99.04 99.05 98.63 99.22 100.00 99.04 100.00 100.00 99.08 100.00 100.00 99.16 99.27 K jcn_only_AA CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2815768_2816013;chr2R_2815654_2816013 chr2R_2815657_2816013 chr2R_2816014_2816113;chr2R_2815599_2815653 57.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA 65.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RpS26 chr2L - chr2L_18443071_18443152 chr2L_18443070_18443071;chr2L_18443152_18443153 chr2L_18442505_18443070;chr2L_18443153_18443237 0.06 0.06 0.06 0.05 0.03 0.00 0.07 0.02 0.05 0.09 0.02 0.05 0.00 0.00 0.07 0.04 0.00 0.01 0.00 0.04 0.01 0.13 0.04 0.04 0.19 0.07 0.35 1.18 0.50 0.06 0.07 0.11 0.06 0.03 0.07 0.10 0.03 0.05 0.08 0.08 0.41 0.04 0.02 0.04 0.09 0.11 0.05 0.10 0.03 0.06 0.11 0.04 0.06 0.09 0.03 0.05 0.08 0.15 K intron_retention CG7911 chr3R - chr3R_25829627_25829711 chr3R_25829626_25829627;chr3R_25829711_25829712 chr3R_25829475_25829626;chr3R_25829712_25829879 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.40 0.31 0.00 0.00 0.19 0.00 1.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.25 0.00 4.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.24 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 K intron_retention Spt-I,I_chr2R_9057761_9058039 chr2R + chr2R_9056956_9057011 chr2R_9056955_9056956;chr2R_9057011_9057012 chr2R_9056456_9056955;chr2R_9057012_9057339 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516728_21516994;chr3L_21516728_21517821 chr3L_21516728_21517023 chr3L_21516383_21516727 4.35 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 8.70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Sec16,I_chrX_12501913_12502010,I_chrX_12502899_12502973 chrX + chrX_12498831_12498893 chrX_12498830_12498831;chrX_12498893_12498894 chrX_12498681_12498830;chrX_12498894_12499421 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 2.44 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RhoGAP5A,C_chrX_5514320_5515557 chrX - chrX_5511260_5511341 chrX_5511259_5511260;chrX_5511341_5511342 chrX_5511154_5511259;chrX_5511342_5511819 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 K jcn_only_AD Adf1,CG15908_CG9410 chr2R + chr2R_2549942_2550073 chr2R_2549954_2550073 chr2R_2550074_2550262;chr2R_2549797_2549941 69.31 66.67 71.88 77.27 64.71 78.72 66.00 74.74 71.11 65.00 76.92 66.32 65.31 65.00 69.23 78.57 68.29 63.83 70.18 68.91 72.22 75.00 69.09 72.55 69.57 70.27 75.00 NA 77.27 61.54 77.08 56.25 58.62 65.48 65.79 74.07 68.75 67.39 69.57 65.57 70.00 68.48 67.44 73.33 78.57 81.08 67.65 53.85 68.75 69.23 69.39 78.57 75.00 65.62 78.12 72.55 68.66 84.44 K alternative_donor crol,I_chr2L_11799403_11802904 chr2L - chr2L_11800323_11802904;chr2L_11800323_11802370;chr2L_11800323_11802286 chr2L_11800323_11802343 chr2L_11800155_11800322;chr2L_11802905_11803004 0.46 0.71 0.38 0.30 0.43 0.45 0.34 0.35 0.39 1.17 0.55 0.20 0.52 0.49 1.10 0.50 0.56 0.46 1.53 0.19 0.52 0.13 0.35 0.25 0.57 0.47 0.24 0.49 0.72 0.25 0.48 0.55 0.36 0.29 0.32 0.27 0.28 0.25 0.16 0.19 2.69 0.20 0.55 0.31 0.78 0.83 0.46 1.12 0.24 0.39 0.51 0.45 0.53 0.57 0.40 0.49 0.68 1.48 K multi_cassette I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499338_1501798 chr3L_1499338_1499771;chr3L_1499880_1500244;chr3L_1500389_1501345;chr3L_1501398_1501798 chr3L_1499772_1499879;chr3L_1500245_1500388;chr3L_1501346_1501397 chr3L_1499043_1499337;chr3L_1501799_1501892 4.76 3.03 2.00 6.45 2.08 1.92 0.00 7.69 4.55 5.00 11.11 10.11 25.71 5.56 4.17 3.17 4.00 2.27 2.94 5.81 9.09 7.55 8.62 5.66 5.41 1.37 5.36 6.52 2.27 6.98 10.14 2.08 8.33 3.33 6.12 11.43 3.23 3.57 4.76 2.11 2.56 4.00 3.92 7.69 5.45 7.25 6.00 2.27 3.92 6.35 9.46 6.12 0.00 3.23 4.62 9.09 4.00 2.94 N alternative_acceptor CG17159,CG17162,noncoding_25215 chrXHet - chrXHet_66049_66121 chrXHet_66052_66121 chrXHet_66122_66324;chrXHet_64549_66048 58.93 68.57 44.12 85.71 54.84 71.43 65.45 61.67 60.22 53.85 57.14 50.00 50.00 61.29 53.66 69.39 50.00 63.33 57.58 57.69 57.89 53.49 71.11 54.35 62.96 66.67 86.67 86.67 75.00 54.05 46.67 54.17 48.28 58.93 44.44 65.71 70.73 50.00 70.00 53.85 55.00 68.25 50.00 67.44 76.47 36.67 65.52 44.00 57.41 76.32 70.27 66.67 52.17 65.00 47.50 59.38 87.50 40.00 K jcn_only_AD uzip,I_chr2R_20916008_20916468 chr2R + chr2R_20899732_20900155;chr2R_20899701_20900155 chr2R_20899685_20900155 chr2R_20900156_20900229;chr2R_20899603_20899684 1.15 1.79 0.00 3.03 2.78 1.85 6.25 2.27 1.23 2.44 0.00 1.00 2.63 2.33 1.82 0.96 0.00 2.27 1.52 2.24 0.00 1.43 1.01 0.00 0.00 2.13 1.89 0.00 0.00 0.00 0.00 0.00 0.93 1.01 1.15 0.00 0.00 0.00 2.70 2.63 1.96 2.73 7.50 0.00 2.04 0.00 0.00 1.25 1.00 0.00 0.00 2.67 0.00 0.00 2.33 2.60 0.00 1.69 K intron_retention Nup358,I_chr3R_21078958_21079044 chr3R + chr3R_21083852_21083922 chr3R_21083851_21083852;chr3R_21083922_21083923 chr3R_21082844_21083851;chr3R_21083923_21084394 0.00 1.28 0.00 1.20 0.00 0.00 1.46 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.50 0.00 0.52 K intron_retention ksr chr3R - chr3R_1306259_1306324 chr3R_1306258_1306259;chr3R_1306324_1306325 chr3R_1306075_1306258;chr3R_1306325_1309607 78.76 83.33 80.00 95.45 87.50 87.50 77.27 90.00 83.33 NA 64.29 86.96 81.82 93.33 60.00 81.82 75.00 77.78 75.00 84.00 76.92 66.67 78.95 78.57 61.54 91.67 71.43 71.43 69.23 69.57 71.43 80.00 82.14 70.37 58.33 92.86 60.00 70.00 81.82 68.18 73.68 88.89 80.00 72.73 80.95 61.54 81.82 70.83 83.33 63.16 76.47 87.50 90.00 76.92 90.91 63.64 81.82 93.33 K intron_retention I_chr3L_2589746_2592161,CG16985 chr3L + chr3L_2599381_2599435 chr3L_2599380_2599381;chr3L_2599435_2599436 chr3L_2599302_2599380;chr3L_2599436_2599501 13.89 13.73 15.25 23.40 9.76 11.76 15.38 16.92 8.11 5.26 14.29 9.21 17.65 20.00 7.81 18.87 12.50 11.11 13.89 10.68 16.22 7.69 15.56 12.77 23.81 21.88 23.40 25.00 26.32 6.25 15.22 0.00 20.00 15.79 14.29 31.58 10.00 12.90 12.31 12.50 22.22 15.91 8.33 20.00 4.17 8.62 11.11 14.29 18.57 26.32 17.74 9.38 5.00 11.32 14.00 2.08 8.86 5.00 K mutually_exclusive CG40263,F_chr2RHet_1265687_1293040,F_chr2RHet_1298459_1298703,F_chr2RHet_1298459_1311408,F_chr2RHet_1298885_1299622,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1293175_1324445,chr2RHet_1324541_1335781 chr2RHet_1293175_1293235,chr2RHet_1293394_1335781 chr2RHet_1324446_1324540 chr2RHet_1293236_1293393 chr2RHet_1293056_1293174;chr2RHet_1335782_1335833 80.00 NA NA 100.00 NA NA 75.00 NA 66.67 NA NA 75.00 NA NA NA 80.00 NA NA NA 77.78 NA NA 85.71 NA NA NA 100.00 NA NA 100.00 80.00 NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA NA K intron_retention Rlip,RI_chr3R_16843597_16843851,I_chr3R_16845111_16845166 chr3R + chr3R_16843597_16843663 chr3R_16843596_16843597;chr3R_16843663_16843664 chr3R_16843497_16843596;chr3R_16843664_16843796 0.00 0.00 NA NA NA NA NA 4.55 NA NA NA 4.55 NA NA NA NA NA NA NA 0.00 NA NA 8.00 0.00 0.00 NA NA NA 40.00 NA 6.67 NA 0.00 0.00 NA 6.67 NA 0.00 5.56 0.00 NA 4.35 NA NA 0.00 9.09 NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA 11.54 K alternative_acceptor CG7630,I_chr3L_17418741_17418811,I_chr3L_17419180_17419283 chr3L + chr3L_17419180_17419283 chr3L_17419180_17419238 chr3L_17419111_17419179;chr3L_17419284_17419348 100.00 99.65 99.53 100.00 100.00 99.55 100.00 99.70 100.00 100.00 100.00 99.76 100.00 100.00 100.00 100.00 100.00 100.00 99.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.63 100.00 99.20 100.00 100.00 99.40 100.00 100.00 100.00 100.00 99.21 100.00 99.72 99.68 100.00 100.00 99.47 99.63 100.00 99.71 99.74 100.00 99.65 100.00 99.66 100.00 99.52 99.73 100.00 99.23 100.00 100.00 K intron_retention CycG,RE_chr3R_27427953_27436598 chr3R - chr3R_27426771_27426833 chr3R_27426770_27426771;chr3R_27426833_27426834 chr3R_27426396_27426770;chr3R_27426834_27427073 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.13 0.00 0.00 0.11 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748984_19750012;chr2R_19748984_19749783 chr2R_19748984_19749899 chr2R_19748884_19748983;chr2R_19750013_19750013 6.67 6.67 5.56 3.17 8.70 5.71 4.84 4.05 3.37 13.33 6.90 5.06 8.82 6.06 5.00 10.29 8.33 8.33 4.55 3.49 2.63 6.67 19.51 6.06 10.00 5.00 2.94 9.09 3.33 3.33 4.08 12.00 7.14 3.08 11.11 6.25 10.34 8.33 12.12 3.45 7.32 2.67 6.25 6.67 7.41 11.43 13.04 2.22 3.95 6.90 8.57 8.70 8.00 8.70 3.92 4.55 8.57 1.92 K intron_retention P58IPK,CG8312 chr3R + chr3R_5413182_5413244 chr3R_5413181_5413182;chr3R_5413244_5413245 chr3R_5412681_5413181;chr3R_5413245_5413354 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 0.00 0.00 0.00 0.00 0.00 0.00 2.14 0.00 0.00 0.00 0.00 2.86 4.47 12.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG7200,RI_chr2L_18157864_18158015 chr2L - chr2L_18157864_18158015 chr2L_18157864_18157917 chr2L_18157764_18157863;chr2L_18158016_18158115 85.45 100.00 90.00 85.19 77.78 90.00 84.21 88.89 94.44 100.00 90.00 88.24 100.00 75.00 88.24 84.62 80.00 93.33 71.43 85.71 100.00 88.89 83.33 82.35 83.33 73.33 84.62 NA 75.00 87.50 81.25 91.67 92.31 84.21 85.71 55.56 75.00 69.23 75.00 85.71 83.33 86.36 87.50 82.35 90.00 77.78 100.00 83.33 94.74 73.33 75.00 83.33 87.50 84.62 94.44 75.00 92.86 94.12 K alternative_acceptor Gs1l,I_chr2L_4456517_4456723,I_chr2L_4458058_4458120 chr2L - chr2L_4456517_4456723 chr2L_4456521_4456723 chr2L_4456724_4456810;chr2L_4456417_4456516 94.12 87.50 NA 100.00 NA NA 94.12 93.33 95.83 NA 100.00 93.33 100.00 NA 91.67 100.00 88.89 100.00 90.91 95.65 100.00 NA NA NA NA NA NA NA 90.91 NA 94.44 NA 88.89 100.00 NA 100.00 NA NA NA NA 77.78 100.00 NA NA 70.00 88.89 NA 100.00 93.33 NA NA NA NA NA 90.00 100.00 NA 84.62 K alternative_acceptor Mnf,RI_chr3L_11108913_11109028 chr3L - chr3L_11109459_11109527 chr3L_11109462_11109527 chr3L_11109528_11109566;chr3L_11109241_11109458 91.18 93.75 93.33 89.47 88.24 94.44 96.15 84.38 88.64 81.82 80.00 88.89 90.00 94.12 72.73 96.30 100.00 83.33 94.44 93.88 90.91 89.47 91.30 90.00 90.91 94.12 91.67 81.82 82.35 95.65 93.75 86.67 93.33 88.89 86.67 93.75 92.00 86.67 85.71 95.59 93.75 95.12 90.91 90.00 94.44 90.91 85.00 90.62 91.18 95.45 94.74 91.67 94.44 90.00 100.00 92.86 93.75 88.57 K alternative_donor CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4840474;chr3R_4839215_4840589 chr3R_4839215_4840394 chr3R_4839038_4839214;chr3R_4840590_4840610 0.00 0.00 9.09 0.00 0.00 0.00 8.33 9.52 3.33 0.00 0.00 6.67 0.00 15.38 0.00 5.88 9.09 0.00 0.00 3.85 0.00 8.33 0.00 0.00 NA 0.00 0.00 9.09 8.33 9.09 7.14 0.00 5.88 5.88 0.00 10.00 0.00 0.00 NA 3.70 7.69 0.00 15.38 6.25 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG2604 chr3R - chr3R_1048869_1048971 chr3R_1048868_1048869;chr3R_1048971_1048972 chr3R_1047347_1048868;chr3R_1048972_1048994 45.98 45.45 48.15 50.63 39.13 40.00 46.27 48.72 44.94 43.18 55.56 42.20 58.82 46.15 47.83 50.00 39.39 47.37 50.00 41.38 48.84 57.78 36.14 62.12 60.98 63.89 50.00 47.96 48.78 42.86 53.33 45.61 43.84 40.30 51.22 78.05 38.71 45.45 43.82 36.45 61.54 45.98 39.39 34.78 30.51 46.58 41.67 39.29 46.24 41.89 46.67 37.50 36.84 41.79 42.65 47.54 45.98 33.78 K alternative_donor Cdc42,I_chrX_19591186_19591967,I_chrX_19591567_19591967,I_chrX_19591671_19591967 chrX + chrX_19591259_19591967;chrX_19591567_19591967 chrX_19591186_19591967 chrX_19591968_19592067;chrX_19591086_19591185 0.53 0.33 1.20 0.72 1.39 1.19 0.94 1.03 0.75 0.56 0.00 0.84 1.14 0.60 0.47 0.52 0.86 0.83 0.25 0.79 0.27 0.00 0.71 0.29 0.53 0.49 0.65 0.40 1.68 1.19 1.12 0.65 0.37 0.55 0.00 0.50 0.42 0.37 0.64 0.27 0.61 0.56 0.66 0.30 0.93 0.40 0.47 0.43 0.59 0.00 0.00 0.41 0.51 0.00 0.84 0.38 0.28 0.00 K intron_retention E_chr2R_18528611_18528868,Ugt58Fa chr2R - chr2R_18531159_18531309 chr2R_18531158_18531159;chr2R_18531309_18531310 chr2R_18530997_18531158;chr2R_18531310_18531516 1.71 2.41 0.00 2.82 0.00 4.17 2.22 2.31 2.61 0.00 0.00 1.98 2.50 2.60 0.00 2.68 0.00 0.00 1.16 3.80 0.00 3.92 3.81 1.09 0.00 0.00 1.90 0.00 5.08 3.28 2.15 1.89 1.59 1.83 5.33 3.08 1.92 0.00 0.00 2.24 3.57 0.76 0.00 0.00 0.00 1.68 3.39 2.99 0.66 1.56 1.72 0.00 0.00 3.51 0.00 1.32 1.71 1.08 K jcn_only_AD eIF-5A,I_chr2R_19945430_19946454,I_chr2R_19945576_19946006,I_chr2R_19945723_19946006,I_chr2R_19945783_19946006,I_chr2R_19945852_19946006,I_chr2R_19945875_19946006,I_chr2R_19945921_19946006,I_chr2R_19946299_19946454,I_chr2R_19946657_19946733,I_chr2R_19948517_19948682 chr2R + chr2R_19945576_19946006;chr2R_19945921_19946006;chr2R_19945875_19946006;chr2R_19945430_19946006 chr2R_19945426_19946006 chr2R_19946007_19946106;chr2R_19945343_19945425 3.63 3.69 3.72 4.22 3.20 3.36 2.96 3.84 2.84 3.98 2.54 3.68 3.20 3.70 3.63 2.82 3.02 3.68 3.50 3.77 3.68 6.03 2.73 2.34 2.85 4.27 3.72 3.63 5.07 6.48 3.82 4.26 5.87 3.50 4.36 4.44 2.65 2.55 3.05 3.06 4.25 3.28 3.29 2.87 4.13 3.78 3.09 4.50 3.34 2.77 3.87 2.12 3.97 3.85 3.22 2.70 2.88 5.10 K intron_retention CG30120,CG5189 chr2R + chr2R_14334456_14334522 chr2R_14334455_14334456;chr2R_14334522_14334523 chr2R_14334269_14334455;chr2R_14334523_14334738 0.00 0.00 2.04 8.77 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 3.77 0.00 1.35 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Xrp1,I_chr3R_14741648_14750799,I_chr3R_14750298_14750799 chr3R + chr3R_14744348_14745144 chr3R_14744347_14744348;chr3R_14745144_14745145 chr3R_14744211_14744347;chr3R_14745145_14745234 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 1.63 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 2.22 1.83 0.00 2.15 6.59 2.13 0.00 0.00 0.00 0.00 0.98 1.12 1.06 0.00 0.00 0.00 1.01 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 1.45 0.00 0.00 0.00 N jcn_only_AA CG12703 chrX + chrX_19645171_19650462 chrX_19645171_19645380 chrX_19644833_19645170 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.10 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD chico,I_chr2L_10246534_10246899 chr2L - chr2L_10246040_10246184;chr2L_10246040_10247024;chr2L_10246040_10246755;chr2L_10246040_10246867 chr2L_10246040_10246899 chr2L_10245878_10246039;chr2L_10247025_10247051 80.85 86.84 91.49 80.00 79.17 88.46 70.83 69.84 73.03 NA 72.73 76.62 87.18 88.24 86.84 75.64 65.62 75.00 73.08 73.03 54.84 79.07 88.57 78.26 80.00 65.00 71.43 85.37 76.00 93.18 87.50 96.00 76.32 79.66 80.65 80.85 89.86 81.13 75.44 90.12 NA 72.31 72.22 83.61 83.33 82.35 87.50 88.64 73.17 85.37 87.93 84.85 78.95 90.91 84.78 93.33 89.66 86.49 K jcn_only_AD Gpo-1,I_chr2R_11747621_11747699,EI_chr2R_11747445_11747699,I_chr2R_11749758_11750187,I_chr2R_11756325_11756380 chr2R - chr2R_11748259_11750201 chr2R_11748259_11750187 chr2R_11748106_11748258;chr2R_11750202_11750219 100.00 100.00 100.00 100.00 NA 100.00 100.00 97.30 96.23 100.00 100.00 100.00 96.30 100.00 96.00 95.65 100.00 NA 100.00 100.00 100.00 98.33 100.00 98.55 100.00 93.10 98.53 97.83 97.78 100.00 97.56 96.08 100.00 97.67 100.00 98.11 100.00 100.00 100.00 99.12 96.23 95.92 NA 100.00 98.67 100.00 100.00 98.63 98.48 100.00 98.46 100.00 95.83 100.00 100.00 100.00 NA 100.00 K intron_retention MB8.chr3R.pasa.66,CG1091,I_chr3R_2910029_2910096,RI_chr3R_2910490_2910686,RI_chr3R_2911041_2911135,RI_chr3R_2946518_2946663 chr3R - chr3R_2910041_2910096 chr3R_2910040_2910041;chr3R_2910096_2910097 chr3R_2909905_2910040;chr3R_2910097_2910162 17.24 20.83 21.43 23.08 18.18 22.86 18.33 15.07 17.65 9.38 12.90 19.72 15.38 22.22 19.30 20.00 12.90 26.67 17.50 14.43 21.43 17.24 14.49 14.29 16.67 23.08 31.82 38.89 20.37 14.06 15.00 10.53 11.54 25.45 21.05 18.37 9.68 14.49 13.10 19.75 13.16 24.19 19.23 14.04 8.33 22.00 12.66 17.31 14.71 14.10 13.43 16.67 12.90 11.48 24.07 20.78 7.95 16.22 K intron_retention Socs16D chrX - chrX_17719924_17721355 chrX_17719923_17719924;chrX_17721355_17721356 chrX_17719580_17719923;chrX_17721356_17721610 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 12.50 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 2.94 0.00 0.00 0.00 5.71 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG9063 chr3L - chr3L_22255797_22255857 chr3L_22255797_22255853 chr3L_22253724_22255796;chr3L_22255858_22256037 82.22 72.73 92.59 86.05 NA NA 79.49 80.49 84.91 61.90 72.41 84.62 92.00 88.46 88.57 82.61 NA 81.82 72.50 73.02 78.26 78.57 79.69 88.37 79.31 87.10 71.43 70.59 81.40 73.81 80.00 84.62 77.42 77.14 80.00 74.47 90.91 86.79 78.72 85.39 83.33 81.82 89.66 87.50 87.50 96.55 93.10 83.87 82.81 NA 77.36 96.55 NA 86.36 80.00 NA NA 83.72 K intron_retention CG12030,Rev1 chr3L + chr3L_654478_654535 chr3L_654477_654478;chr3L_654535_654536 chr3L_654228_654477;chr3L_654536_655893 4.35 9.52 3.57 8.89 12.50 2.94 11.90 17.65 9.80 0.00 0.00 6.25 NA 0.00 0.00 5.56 10.53 9.09 17.86 12.82 0.00 6.25 4.26 0.00 0.00 10.00 4.44 0.00 4.65 0.00 5.26 0.00 0.00 13.73 0.00 4.65 0.00 3.85 0.00 4.62 0.00 9.26 25.00 5.41 0.00 5.26 0.00 4.17 8.33 0.00 8.00 5.71 0.00 0.00 13.51 0.00 0.00 0.00 K jcn_only_AD drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9390195;chr2R_9389597_9390151;chr2R_9389597_9389907;chr2R_9389597_9389940;chr2R_9389597_9390293;chr2R_9389597_9390264;chr2R_9389597_9389753;chr2R_9389597_9389757 chr2R_9389597_9389751 chr2R_9389497_9389596;chr2R_9390294_9390295 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 1.39 0.00 1.20 0.87 0.00 1.10 0.00 0.00 1.33 1.82 2.83 1.37 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 1.64 0.00 1.96 0.75 0.00 0.00 3.08 0.00 0.00 1.19 0.00 0.95 0.00 K jcn_only_AA CG14235,noncoding_24847,CG18809 chrX - chrX_19636926_19637476 chrX_19636939_19637476 chrX_19637477_19637545;chrX_19636920_19636925 24.07 32.00 NA 36.11 NA NA NA 35.29 21.43 NA NA 36.73 NA NA NA NA NA NA NA 25.00 NA NA 22.45 24.07 NA NA 27.59 40.91 20.97 25.00 NA NA 20.00 25.00 12.00 NA 19.64 26.32 21.43 NA NA 13.33 NA 20.69 10.53 24.32 28.30 14.29 27.50 16.67 16.67 22.22 17.02 30.77 NA 14.29 24.39 34.21 K alternative_donor CG4908 chr2L + chr2L_10222703_10223140 chr2L_10223060_10223140 chr2L_10223141_10224406;chr2L_10222658_10222702 25.00 NA NA 14.29 NA NA 28.57 30.00 25.00 NA NA 25.00 NA NA NA 42.86 NA NA NA 21.43 NA NA NA NA NA NA NA NA NA NA 37.50 NA NA NA NA NA NA NA NA 33.33 NA 15.38 NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA K alternative_donor AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9004021_9004854;chrX_9003790_9004854;chrX_9003918_9004854 chrX_9003728_9004854 chrX_9004855_9004862;chrX_9003721_9003727 46.67 63.64 50.00 50.00 NA 33.33 40.74 55.56 54.84 NA 42.86 60.53 46.15 54.55 53.33 51.28 11.11 28.57 40.91 46.43 0.00 57.14 61.90 36.36 12.50 36.36 33.33 NA 44.44 25.00 55.56 50.00 42.86 50.00 14.29 18.18 77.78 16.67 16.67 46.67 40.00 48.15 53.85 55.56 NA 33.33 50.00 60.00 55.17 28.57 46.67 54.55 0.00 NA 59.26 57.14 NA 60.00 K intron_retention crol,I_chr2L_11799403_11802904 chr2L - chr2L_11803675_11803784 chr2L_11803674_11803675;chr2L_11803784_11803785 chr2L_11803284_11803674;chr2L_11803785_11803898 27.72 29.51 21.12 8.80 38.79 33.61 53.60 36.75 27.25 19.85 28.46 30.38 37.10 25.55 34.56 22.67 29.46 26.32 30.36 23.04 27.72 26.08 23.23 30.92 35.50 36.00 51.20 34.16 29.80 18.75 23.81 21.55 18.68 28.51 25.00 32.67 24.80 25.17 26.20 20.30 31.41 30.63 30.70 33.33 15.00 22.67 16.35 20.90 27.80 19.42 31.38 31.25 17.98 23.19 28.49 27.91 25.32 19.47 K jcn_only_AA CG14235,noncoding_24847,CG18809,noncoding_24848 chrX - chrX_19635202_19638294;chrX_19635236_19638294 chrX_19635199_19638294 chrX_19638295_19638317;chrX_19634765_19635198 44.59 45.40 44.59 43.12 46.35 47.61 43.55 47.36 46.11 40.43 45.74 43.70 45.61 44.70 50.24 42.54 42.86 47.98 43.80 44.89 47.80 42.26 43.22 44.77 41.58 43.56 48.05 45.56 36.99 46.93 41.30 49.45 31.11 44.81 40.35 39.01 44.05 50.54 45.60 48.14 37.50 47.46 40.50 43.28 40.46 38.81 45.27 40.69 44.10 41.46 46.55 41.18 45.42 45.13 40.50 49.08 45.37 41.90 K intron_retention CG5323 chr2R + chr2R_14502753_14502812 chr2R_14502752_14502753;chr2R_14502812_14502813 chr2R_14502569_14502752;chr2R_14502813_14502977 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 1.06 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 K intron_retention CG30187,F_chr2R_18804786_18805198,F_chr2R_18805721_18805778 chr2R - chr2R_18804822_18804873 chr2R_18804821_18804822;chr2R_18804873_18804874 chr2R_18804368_18804821;chr2R_18804874_18804992 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 12.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 1.41 K intron_retention CG5823 chr3R - chr3R_13358922_13358981 chr3R_13358921_13358922;chr3R_13358981_13358982 chr3R_13358023_13358921;chr3R_13358982_13359052 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 6.15 9.30 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG18347 chr3R + chr3R_7796697_7796752 chr3R_7796696_7796697;chr3R_7796752_7796753 chr3R_7796556_7796696;chr3R_7796753_7796978 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.11 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 K intron_retention I_chr3R_1183570_1183645,CG16708,E_chr3R_1185101_1187377 chr3R - chr3R_1185010_1185069 chr3R_1185009_1185010;chr3R_1185069_1185070 chr3R_1185001_1185009;chr3R_1185070_1185100 1.85 0.00 5.00 1.64 0.00 1.85 4.88 2.33 3.91 0.00 0.00 1.14 0.00 1.75 0.00 2.78 0.00 2.63 6.45 2.05 3.39 0.66 2.02 2.11 0.00 0.00 3.23 6.49 0.00 0.00 0.00 2.44 2.20 2.41 2.35 6.25 2.04 0.00 1.98 1.06 1.64 0.89 2.17 0.00 1.41 3.31 2.91 1.80 5.26 1.94 1.72 0.00 0.00 0.00 2.44 2.15 2.29 1.03 K intron_retention LamC chr2R - chr2R_10460353_10462729 chr2R_10460352_10460353;chr2R_10462729_10462730 chr2R_10459758_10460352;chr2R_10462730_10463307 40.00 43.75 40.00 47.83 50.00 38.46 36.36 25.00 32.56 NA 63.64 38.71 58.33 31.58 45.45 47.37 22.22 NA 46.15 30.00 NA 45.16 41.18 38.71 NA 36.84 42.86 61.11 45.00 21.05 43.48 37.93 39.39 44.44 55.00 47.06 44.00 45.45 38.10 43.75 41.67 29.27 50.00 26.53 30.00 35.00 28.57 26.32 43.33 32.61 42.42 43.75 NA 40.00 37.50 31.58 NA 21.43 K alternative_donor CG42299,CG15643,I_chrX_15465519_15465586 chrX - chrX_15465519_15465596 chrX_15465519_15465586 chrX_15465419_15465518;chrX_15465597_15465686 5.56 NA NA NA NA NA 0.00 NA 11.11 NA NA 4.35 NA NA NA NA NA NA NA 4.35 NA NA NA 0.00 NA NA 5.56 NA 15.38 0.00 0.00 NA NA 6.67 NA NA 5.56 NA 6.25 3.85 NA 5.00 NA 11.11 NA NA NA 5.88 6.25 NA NA NA NA NA NA NA NA NA K intron_retention Aldolase,I_chr3R_22083764_22086684 chr3R - chr3R_22082346_22082654 chr3R_22082345_22082346;chr3R_22082654_22082655 chr3R_22082257_22082345;chr3R_22082655_22082854 50.00 42.86 58.82 81.25 NA 40.00 52.78 44.44 63.33 51.85 NA 44.44 50.00 36.36 46.15 61.11 NA 22.22 50.00 54.55 44.44 41.67 50.00 41.38 52.94 41.18 45.83 70.00 78.69 42.86 57.14 46.67 46.15 40.00 40.00 76.47 47.83 52.63 48.15 73.33 50.00 37.50 52.63 35.48 53.33 50.00 44.00 NA 64.00 53.12 54.84 63.64 NA 40.00 55.56 34.62 73.33 NA K intron_retention arm,I_chrX_1793073_1794406,RI_chrX_1795648_1795745,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1786153_1787435 chrX_1786152_1786153;chrX_1787435_1787436 chrX_1785434_1786152;chrX_1787436_1787532 1.09 1.32 0.62 1.33 1.27 1.68 3.12 0.54 1.30 0.85 1.27 3.07 1.73 1.87 0.96 0.72 1.21 0.68 0.00 1.68 1.01 1.00 2.09 0.59 1.22 0.87 1.44 1.54 0.61 1.71 0.78 0.66 0.00 2.26 1.50 1.85 0.89 0.39 1.24 1.37 1.26 1.32 0.39 1.79 0.45 1.04 1.02 1.20 1.09 0.81 2.19 1.06 0.99 0.93 0.92 0.88 1.23 0.69 K alternative_acceptor CG5746 chr3R - chr3R_20173785_20173868 chr3R_20173803_20173868 chr3R_20173869_20174282;chr3R_20173386_20173784 89.53 90.70 96.77 91.84 85.19 96.30 91.67 96.88 87.67 91.30 96.97 89.55 95.45 95.24 87.18 94.74 96.30 88.89 84.00 80.25 96.43 94.52 89.71 87.10 87.18 88.46 81.03 75.38 94.83 94.29 86.36 97.56 90.99 95.12 82.98 88.24 87.65 81.67 89.53 92.78 85.71 83.95 78.26 82.76 86.11 85.00 92.16 91.59 90.57 89.19 92.31 87.50 85.11 80.49 96.15 83.67 91.11 86.52 K jcn_only_AD RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12914849_12916177;chr2R_12914834_12916177;chr2R_12914845_12916177 chr2R_12914941_12916177 chr2R_12916178_12916526;chr2R_12914830_12914833 0.00 NA NA 0.00 NA NA 8.33 0.00 0.00 NA NA 0.00 4.55 0.00 NA 2.38 NA NA 0.00 NA NA 4.35 4.00 NA NA NA NA NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 NA NA NA 4.35 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 2.38 NA 0.00 NA NA NA 0.00 NA NA 3.70 K jcn_only_AA eIF-5A,I_chr2R_19946299_19946454,I_chr2R_19946657_19946733,RI_chr2R_19946806_19946861,I_chr2R_19948517_19948682 chr2R + chr2R_19946657_19946733 chr2R_19946657_19946718 chr2R_19946588_19946656;chr2R_19946734_19946799 100.00 100.00 100.00 99.98 100.00 99.95 99.98 99.98 99.98 100.00 100.00 99.98 100.00 100.00 99.96 100.00 100.00 100.00 99.97 99.96 100.00 100.00 99.97 100.00 99.95 99.92 100.00 99.61 100.00 99.87 100.00 100.00 100.00 99.98 100.00 100.00 100.00 100.00 100.00 99.98 99.94 100.00 100.00 99.96 100.00 100.00 100.00 99.89 99.98 100.00 99.97 100.00 100.00 100.00 99.94 100.00 99.98 100.00 K jcn_only_AD I_chr3L_7374787_7375310,smid,I_chr3L_7375166_7375310,I_chr3L_7375435_7375508 chr3L + chr3L_7375112_7375310;chr3L_7375255_7375310 chr3L_7375166_7375310 chr3L_7375311_7375410;chr3L_7375066_7375111 1.23 0.00 2.94 0.00 0.00 0.00 0.00 3.33 2.44 1.69 2.86 0.74 1.54 0.00 2.86 0.00 0.00 1.23 1.49 1.02 0.00 0.00 2.74 1.14 1.75 1.52 1.11 1.43 8.47 0.00 0.00 1.79 1.72 1.87 3.45 0.00 1.43 1.45 1.05 3.50 2.27 1.00 0.00 1.38 0.00 4.23 1.16 1.06 0.83 1.59 2.11 0.90 0.00 2.13 1.41 2.53 0.00 0.00 K intron_retention CG15168 chr2L + chr2L_18987871_18987935 chr2L_18987870_18987871;chr2L_18987935_18987936 chr2L_18987672_18987870;chr2L_18987936_18987988 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.03 2.88 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor smi35A,E_chr2L_14222082_14233578,E_chr2L_14222082_14233893,RI_chr2L_14233579_14233647 chr2L - chr2L_14229537_14233578;chr2L_14229537_14233647 chr2L_14229537_14233893 chr2L_14229532_14229536;chr2L_14233894_14233993 0.00 8.33 0.00 0.00 0.00 9.09 2.78 3.23 2.13 0.00 0.00 0.00 3.70 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 3.12 5.26 0.00 0.00 NA NA 0.00 NA 10.00 0.00 K jcn_only_AA CG3409,I_chr2R_2591946_2592739,RI_chr2R_2593704_2599587 chr2R - chr2R_2591946_2592739 chr2R_2592092_2592739 chr2R_2592740_2592839;chr2R_2591846_2591945 100.00 NA NA 100.00 NA NA 90.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 NA 54.17 NA NA NA 100.00 NA NA NA 100.00 100.00 NA 96.55 100.00 NA 100.00 NA NA NA 100.00 NA 100.00 NA NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 K alternative_donor CG7203,cdc14,RI_chr2L_7806524_7806667 chr2L - chr2L_7806524_7806667 chr2L_7806524_7806656 chr2L_7806424_7806523;chr2L_7806668_7806767 97.62 NA NA 90.00 NA NA NA NA 93.33 NA NA 100.00 NA 87.50 NA 91.67 NA NA 100.00 95.24 NA NA 90.00 100.00 NA 100.00 87.50 NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 NA 91.67 NA NA NA NA NA NA 93.33 NA 100.00 NA NA NA 100.00 NA NA NA K jcn_only_AA CG2162,EI_chr3L_3035365_3037783,I_chr3L_3036071_3036490,I_chr3L_3039516_3039562 chr3L + chr3L_3035365_3037783 chr3L_3035365_3036490 chr3L_3035265_3035364 97.72 97.14 98.15 87.32 100.00 95.24 98.48 88.10 97.37 96.15 100.00 97.94 94.00 100.00 97.78 97.37 92.00 100.00 92.11 99.10 NA 88.10 98.18 100.00 94.74 95.00 100.00 100.00 83.33 92.59 97.78 95.65 97.87 98.41 100.00 100.00 100.00 98.08 98.46 98.63 96.55 96.39 94.29 97.62 97.67 98.04 96.00 97.37 96.33 98.11 97.06 100.00 97.50 100.00 97.44 98.15 97.22 100.00 K alternative_donor CG3632,RI_chrX_16195880_16196242 chrX + chrX_16190917_16191693;chrX_16190941_16191693 chrX_16190824_16191693 chrX_16191694_16191751;chrX_16190763_16190823 36.36 30.77 42.86 44.44 20.00 43.75 25.00 37.84 37.50 NA 36.36 45.45 37.50 40.00 57.14 47.22 33.33 50.00 36.84 34.29 46.15 33.33 50.00 33.33 30.77 42.86 42.86 33.33 35.71 0.00 36.36 28.57 42.86 36.36 28.57 30.00 58.82 11.11 33.33 23.08 NA 44.74 50.00 30.77 16.67 25.00 40.00 30.77 42.42 14.29 31.58 43.75 12.50 NA 47.37 36.36 38.46 8.33 K alternative_donor CG32313,I_chr3L_1545399_1545473,RI_chr3L_1545406_1545469,REI_chr3L_1545423_1545473,I_chr3L_1545606_1545652 chr3L - chr3L_1545406_1545473 chr3L_1545406_1545469 chr3L_1545323_1545405;chr3L_1545474_1545569 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention sop,RI_chr2L_9897132_9897211 chr2L - chr2L_9897132_9897472 chr2L_9897131_9897132;chr2L_9897472_9897473 chr2L_9897032_9897131;chr2L_9897473_9897825 0.00 0.00 0.38 1.35 0.00 0.00 1.02 0.00 0.00 0.00 1.43 0.00 2.15 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 5.00 NA NA 1.89 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7433 chr3L - chr3L_19993161_19993220 chr3L_19993160_19993161;chr3L_19993220_19993221 chr3L_19993036_19993160;chr3L_19993221_19993329 14.29 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA 5.56 K intron_retention TER94 chr2R + chr2R_5880202_5880267 chr2R_5880201_5880202;chr2R_5880267_5880268 chr2R_5879542_5880201;chr2R_5880268_5880422 0.00 0.00 0.41 0.63 0.00 0.00 0.34 0.00 0.39 0.00 0.00 0.21 0.00 0.00 0.36 0.00 0.53 0.43 0.56 0.62 0.00 0.00 0.30 0.43 0.00 0.00 1.45 0.88 0.50 0.44 0.00 0.00 0.00 0.60 0.00 0.40 0.24 0.00 0.00 0.00 1.18 0.44 0.53 0.00 0.35 0.30 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.29 0.00 0.00 K alternative_donor Akt1 chr3R + chr3R_11926502_11926621;chr3R_11924988_11926621;chr3R_11925318_11926621;chr3R_11925014_11926621 chr3R_11925383_11926621 chr3R_11926622_11926719;chr3R_11924974_11924987 40.00 42.11 53.45 46.30 26.19 21.05 41.30 32.67 27.27 46.88 45.00 32.35 36.36 20.75 14.29 58.62 43.40 62.50 32.81 54.33 20.00 26.67 41.11 54.84 48.94 36.59 48.65 28.26 22.22 25.00 28.33 30.00 25.68 38.24 62.75 45.45 26.51 59.09 29.17 37.11 28.89 46.85 30.00 33.33 14.29 52.00 64.15 40.00 43.86 56.00 77.14 30.61 54.84 54.55 45.31 30.43 60.00 64.10 K jcn_only_AA Ide,I_chr3L_20366301_20366354,I_chr3L_20368434_20368519,I_chr3L_20368443_20368519 chr3L - chr3L_20368443_20368519;chr3L_20368462_20368519 chr3L_20368434_20368519 chr3L_20368520_20368619;chr3L_20368343_20368433 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 2.00 2.91 0.00 8.70 0.00 0.00 0.00 0.00 1.79 0.85 4.35 0.00 3.57 0.00 0.00 0.00 0.00 1.96 1.52 0.00 3.30 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.98 2.86 1.83 0.00 2.83 0.00 0.00 2.13 0.00 0.95 5.66 3.53 2.17 0.00 3.12 0.00 1.89 0.00 0.00 N cassette CG33558,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2816779_2817753 chr2R_2816779_2817459;chr2R_2817604_2817753 chr2R_2817460_2817603 chr2R_2816679_2816778;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 72.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG5284,I_chr3L_16086347_16086804 chr3L + chr3L_16087348_16087449 chr3L_16087347_16087348;chr3L_16087449_16087450 chr3L_16087088_16087347;chr3L_16087450_16087648 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.52 100.00 100.00 99.26 99.49 100.00 100.00 100.00 100.00 100.00 99.33 100.00 K cassette unc-104,I_chr2R_12643956_12644305,RI_chr2R_12650846_12659758 chr2R - chr2R_12641658_12643391 chr2R_12641658_12641747;chr2R_12641775_12643391 chr2R_12641748_12641774 chr2R_12641468_12641657;chr2R_12643392_12643503 35.71 NA NA 100.00 NA NA 5.88 46.15 35.00 NA NA 33.33 NA NA NA 30.77 NA NA NA 30.77 NA 35.71 NA NA NA NA NA NA 20.00 NA NA NA 36.36 60.00 NA NA NA NA 46.15 NA NA 30.00 NA 50.00 NA NA NA 33.33 36.36 NA 40.00 NA NA NA NA NA NA NA K intron_retention alpha-Spec,I_chr3L_1780038_1781094 chr3L - chr3L_1779986_1781094 chr3L_1779985_1779986;chr3L_1781094_1781095 chr3L_1779938_1779985;chr3L_1781095_1781194 0.79 0.60 1.31 1.67 0.94 1.33 1.09 0.86 0.93 0.70 1.12 1.29 0.89 0.70 0.64 0.80 0.84 0.71 1.31 0.79 0.00 0.39 0.92 0.41 0.69 0.56 1.00 2.49 0.71 1.18 1.24 0.89 0.83 0.54 0.72 0.66 1.64 1.25 0.88 1.42 0.47 0.96 0.85 0.56 0.54 0.56 0.40 0.72 0.74 0.38 0.69 0.00 0.59 0.49 1.06 1.14 0.54 0.40 K alternative_acceptor Prat chr3R - chr3R_3737336_3737415 chr3R_3737339_3737415 chr3R_3737416_3737540;chr3R_3735310_3737335 67.35 65.38 73.33 66.67 61.29 64.71 78.12 63.46 69.88 66.67 66.67 63.93 63.16 62.50 75.68 68.42 65.22 68.97 66.67 63.64 78.57 77.14 68.00 65.31 63.16 65.00 77.78 95.45 66.67 80.00 66.67 80.00 71.11 78.05 56.25 75.00 63.16 67.44 74.51 60.00 60.00 64.29 66.67 66.67 68.18 75.00 75.86 56.82 75.44 59.26 66.67 82.14 71.43 72.00 74.42 71.79 67.35 68.52 K multi_cassette Jupiter,I_chr3R_7417030_7419354,I_chr3R_7418347_7445425,RE_chr3R_7419487_7429863,I_chr3R_7429934_7430307,I_chr3R_7429962_7445425,I_chr3R_7430006_7445425,RI_chr3R_7442748_7445425,RI_chr3R_7442793_7445425 chr3R - chr3R_7418347_7445425 chr3R_7418347_7419043;chr3R_7419077_7419354;chr3R_7419489_7429863;chr3R_7429962_7445425 chr3R_7419044_7419076;chr3R_7419355_7419488;chr3R_7429864_7429961 chr3R_7418247_7418346;chr3R_7445426_7445525 99.07 97.18 100.00 99.07 100.00 100.00 93.44 98.65 100.00 98.70 100.00 100.00 100.00 100.00 98.39 100.00 97.73 100.00 100.00 100.00 100.00 96.77 100.00 97.92 92.68 96.23 97.62 93.10 98.52 100.00 100.00 100.00 98.14 100.00 98.97 98.82 98.70 97.50 99.00 98.32 99.44 99.21 100.00 100.00 99.11 99.08 98.68 99.55 99.12 98.98 98.81 97.96 98.33 98.53 98.46 100.00 98.61 99.48 K intron_retention CG8552,I_chr2L_8140779_8156516 chr2L - chr2L_8134529_8134626 chr2L_8134528_8134529;chr2L_8134626_8134627 chr2L_8134264_8134528;chr2L_8134627_8134773 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention l(1)G0196,I_chrX_21900456_21904601 chrX + chrX_21906943_21906992 chrX_21906942_21906943;chrX_21906992_21906993 chrX_21906870_21906942;chrX_21906993_21907212 25.66 NA NA NA NA NA NA 25.00 26.32 NA NA 12.50 NA NA NA 36.84 NA 14.29 NA 12.50 NA NA NA NA NA NA NA NA NA NA 38.46 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA 38.89 NA NA NA NA NA NA NA NA 25.00 K intron_retention l(1)G0193 chrX - chrX_7837261_7837716 chrX_7837260_7837261;chrX_7837716_7837717 chrX_7836542_7837260;chrX_7837717_7837749 1.72 0.00 0.93 2.78 1.49 2.50 3.10 0.58 2.58 2.86 1.32 2.11 3.61 0.00 2.22 1.72 2.74 0.00 3.49 2.51 1.41 0.00 2.56 2.27 3.03 0.00 0.00 3.28 2.90 0.00 3.37 1.82 3.92 3.36 0.00 0.00 0.00 0.00 2.15 1.67 0.00 1.15 1.37 2.61 0.00 3.57 2.67 2.35 3.30 1.41 2.56 0.00 0.00 0.00 1.80 0.00 0.00 1.08 K intron_retention CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3018025_3018274 chr2L_3018024_3018025;chr2L_3018274_3018275 chr2L_3017982_3018024;chr2L_3018275_3018278 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.28 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 92.31 K intron_retention Tak1 chrX - chrX_20393473_20393531 chrX_20393472_20393473;chrX_20393531_20393532 chrX_20393318_20393472;chrX_20393532_20393555 0.00 2.44 0.00 0.00 0.00 2.38 0.00 0.00 7.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 6.56 0.00 0.00 0.00 0.00 2.04 15.62 7.50 5.41 6.82 3.85 0.00 0.00 0.00 7.69 0.00 0.00 4.11 3.77 6.67 3.03 0.00 0.00 5.00 10.64 2.17 8.51 6.00 4.55 2.86 0.00 0.00 0.00 0.00 6.38 0.00 5.71 K jcn_only_AD CG7231 chr2L + chr2L_7985434_7985552;chr2L_7985494_7985552 chr2L_7985442_7985552 chr2L_7985553_7985768;chr2L_7985425_7985433 22.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA NA 29.17 NA K alternative_donor CG42507,Trl,I_chr3L_14745733_14745798,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14744876_14746310;chr3L_14744876_14745798 chr3L_14744876_14746433 chr3L_14744367_14744875;chr3L_14746434_14746571 16.79 14.29 16.82 21.01 18.18 18.95 17.05 17.24 14.78 19.32 18.18 13.64 5.77 21.05 11.21 10.20 15.71 9.35 17.07 16.29 19.75 7.26 26.44 19.75 16.79 19.00 20.55 14.78 10.00 16.95 17.02 8.40 11.46 22.50 20.29 16.57 14.19 16.47 14.45 13.32 9.09 18.10 14.29 19.46 8.54 8.76 14.88 9.96 21.26 12.37 20.00 20.83 17.75 17.44 20.80 16.48 18.57 11.39 K cassette Tango1,I_chr2L_6652445_6652752,I_chr2L_6652699_6652752 chr2L + chr2L_6652445_6652752 chr2L_6652445_6652496;chr2L_6652630_6652752 chr2L_6652497_6652629 chr2L_6652345_6652444;chr2L_6652753_6652852 100.00 98.51 100.00 100.00 100.00 100.00 100.00 99.04 99.30 100.00 100.00 98.31 100.00 98.53 98.72 98.90 100.00 100.00 100.00 100.00 98.21 100.00 99.00 100.00 100.00 100.00 100.00 100.00 98.89 98.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.78 99.27 100.00 100.00 100.00 100.00 98.73 100.00 100.00 100.00 100.00 100.00 100.00 98.28 100.00 100.00 100.00 99.12 K intron_retention l(2)k05819,I_chr2L_4396173_4396266 chr2L + chr2L_4397756_4397923 chr2L_4397755_4397756;chr2L_4397923_4397924 chr2L_4396969_4397755;chr2L_4397924_4399074 97.37 98.39 97.18 96.67 92.98 98.25 89.77 99.03 98.78 97.73 91.23 98.36 97.73 98.21 98.36 98.84 98.48 98.33 97.01 99.30 89.66 99.06 96.67 97.01 96.15 97.01 94.29 96.30 98.31 96.08 98.18 98.72 96.45 97.22 98.15 100.00 97.30 95.24 98.73 99.26 96.94 96.45 98.04 98.89 100.00 99.02 91.49 97.89 96.46 97.14 95.38 97.44 96.97 97.37 97.33 98.28 96.00 95.38 K jcn_only_AA TMS1 chr3L + chr3L_16407594_16407920;chr3L_16407594_16407905;chr3L_16407594_16407914;chr3L_16407594_16407902 chr3L_16407594_16407893 chr3L_16407384_16407593;chr3L_16407921_16408056 59.11 55.54 63.03 45.72 58.71 60.13 39.92 58.71 60.83 49.75 65.03 55.23 65.01 64.35 64.59 60.74 69.95 58.56 61.20 59.20 63.68 60.46 55.50 57.40 58.29 75.55 57.93 78.26 59.11 60.12 50.74 55.49 63.32 58.64 61.17 52.71 51.90 56.17 55.85 58.22 60.58 61.80 61.29 51.32 62.95 59.34 56.33 60.22 60.65 53.02 57.27 62.12 48.15 54.88 63.23 57.47 59.50 50.47 K jcn_only_AD wdb,I_chr3R_23394314_23406731,I_chr3R_23394314_23406794,I_chr3R_23394314_23407159,RI_chr3R_23394314_23407186,I_chr3R_23394314_23407412,I_chr3R_23394314_23407715,I_chr3R_23394314_23407721,RI_chr3R_23406048_23406731,RI_chr3R_23406048_23406794,I_chr3R_23406048_23406928,RI_chr3R_23406048_23407402 chr3R - chr3R_23406048_23406928;chr3R_23406048_23406865;chr3R_23406048_23407723 chr3R_23406048_23407402 chr3R_23405948_23406047;chr3R_23407724_23407815 3.57 NA 0.00 0.00 NA NA 4.17 3.03 2.94 NA NA 0.00 NA 3.85 0.00 0.00 0.00 NA NA 7.41 NA 0.00 2.38 10.71 3.70 6.06 0.00 NA 7.41 5.00 4.35 5.00 NA 7.14 3.57 8.11 0.00 3.85 NA 0.00 4.76 4.35 NA 0.00 4.76 NA 0.00 10.00 0.00 5.00 2.44 NA NA NA 0.00 NA NA NA K intron_retention bbc,REI_chr2R_9379401_9381986 chr2R - chr2R_9379099_9379159 chr2R_9379098_9379099;chr2R_9379159_9379160 chr2R_9378940_9379098;chr2R_9379160_9379400 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 8.39 12.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Taf10,CG2862 chr2L + chr2L_2768227_2768285 chr2L_2768226_2768227;chr2L_2768285_2768286 chr2L_2768069_2768226;chr2L_2768286_2768643 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 8.33 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG2924,I_chrX_2163288_2163676,I_chrX_2163738_2163863,I_chrX_2163738_2164440,I_chrX_2163738_2164560,I_chrX_2168373_2168893 chrX - chrX_2163738_2164440;chrX_2163738_2164731 chrX_2163738_2164670 chrX_2163677_2163737;chrX_2164732_2164736 10.55 NA NA 18.18 NA NA 10.00 7.69 22.22 NA NA NA NA NA NA NA NA NA NA 8.33 NA NA NA NA NA NA NA NA NA NA NA NA NA 11.11 NA NA NA NA NA NA NA 7.14 NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG17508,RI_chr2R_1496995_1497120,chr2R_1497138_1497448.0 chr2R + chr2R_1496995_1497120;chr2R_1496995_1497568 chr2R_1496995_1497637 chr2R_1496895_1496994;chr2R_1497638_1497761 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 2.86 0.00 0.00 0.00 1.92 K intron_retention CG3164,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_122995_123080 chr2L_122994_122995;chr2L_123080_123081 chr2L_122711_122994;chr2L_123081_123258 51.43 59.68 60.00 64.24 56.82 50.00 61.11 62.18 62.91 10.81 38.64 58.87 24.66 55.21 46.15 65.58 64.79 61.36 59.05 47.62 51.35 23.53 64.47 53.12 55.10 65.31 51.43 27.78 39.53 26.15 47.27 34.04 23.44 63.04 44.68 40.91 48.28 51.43 56.00 43.24 40.62 58.47 52.94 50.00 38.98 46.59 43.90 30.30 57.86 46.07 52.86 52.38 57.89 48.48 62.69 55.00 55.56 30.77 K intron_retention Ubc-E2H chrX - chrX_7984025_7984076 chrX_7984024_7984025;chrX_7984076_7984077 chrX_7982486_7984024;chrX_7984077_7984180 98.00 100.00 97.67 98.82 100.00 97.14 95.92 98.95 99.12 96.67 100.00 100.00 100.00 97.92 97.56 98.80 97.62 97.06 100.00 98.80 96.55 97.20 96.23 100.00 100.00 97.56 97.37 94.74 100.00 98.48 97.96 97.14 99.06 98.75 97.56 100.00 93.33 96.77 96.55 97.44 100.00 98.92 97.30 98.00 97.30 100.00 96.15 97.44 99.10 97.22 97.44 100.00 100.00 100.00 98.15 100.00 94.59 98.95 K alternative_acceptor CG8490 chr2R + chr2R_8222882_8222945 chr2R_8222882_8222936 chr2R_8222813_8222881;chr2R_8222946_8223775 30.77 NA 33.33 35.29 25.00 NA 45.45 29.63 30.00 NA 30.77 33.33 NA NA 28.57 30.00 NA 23.08 18.75 27.59 33.33 NA NA NA NA 38.46 NA NA NA NA 30.77 NA NA 33.33 NA NA NA NA NA NA NA 23.81 NA NA NA NA NA NA 33.33 NA NA NA NA NA 38.46 NA NA NA K intron_retention Vps35,RI_chr2R_18073600_18073666,I_chr2R_18073728_18074021,RI_chr2R_18074210_18074272 chr2R + chr2R_18073600_18073666 chr2R_18073599_18073600;chr2R_18073666_18073667 chr2R_18073511_18073599;chr2R_18073667_18073727 95.03 96.77 93.94 100.00 88.89 92.00 91.11 97.22 94.83 NA 92.31 91.78 100.00 96.00 97.30 90.79 94.12 96.00 96.30 100.00 95.24 89.19 93.22 97.14 100.00 97.06 95.56 96.15 89.47 91.67 96.67 93.33 96.30 97.73 96.88 97.96 90.91 96.43 96.67 90.91 92.86 90.91 91.30 96.00 78.57 92.31 96.55 92.31 91.67 95.24 93.10 87.10 86.21 95.65 96.77 88.46 100.00 94.74 K jcn_only_AA l(2)k14710 chr2R - chr2R_2098331_2099100 chr2R_2098361_2099100 chr2R_2099101_2099649;chr2R_2098233_2098330 100.00 100.00 100.00 97.78 100.00 97.14 100.00 100.00 100.00 NA NA 98.39 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 98.63 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 94.74 100.00 97.50 100.00 100.00 97.06 100.00 100.00 100.00 97.22 98.11 100.00 95.00 100.00 98.08 100.00 93.75 96.55 96.30 100.00 96.77 100.00 100.00 K intron_retention Syb chr2R - chr2R_6137333_6137873 chr2R_6137332_6137333;chr2R_6137873_6137874 chr2R_6137005_6137332;chr2R_6137874_6138091 7.42 0.00 NA 14.85 NA NA NA 6.52 15.15 NA 4.35 11.76 12.50 NA NA 15.15 NA NA NA 3.57 0.00 NA 4.76 0.00 NA NA 14.29 NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA 12.50 NA NA NA 10.53 NA NA 11.11 0.00 12.50 NA 0.00 11.11 NA 4.35 8.33 NA K jcn_only_AD CG12703 chrX + chrX_19645123_19645380;chrX_19645198_19645380;chrX_19645202_19645380;chrX_19645171_19645380;chrX_19644924_19645380 chrX_19645200_19645380 chrX_19645381_19645579;chrX_19644833_19644923 0.60 1.15 0.00 0.00 0.00 0.00 0.00 0.55 2.29 0.00 0.00 0.86 0.00 0.00 1.59 0.60 0.94 0.00 0.91 0.41 0.00 0.00 0.76 2.94 0.00 0.00 1.72 1.82 1.39 0.66 0.00 0.00 0.64 0.53 1.71 0.00 1.76 0.00 2.58 0.00 0.77 0.00 0.98 0.00 0.00 0.75 1.02 0.00 0.90 1.20 1.60 1.56 4.55 1.52 0.00 1.98 1.96 0.50 K intron_retention RpS27A,Ip259 chr2L + chr2L_10408387_10408738 chr2L_10408386_10408387;chr2L_10408738_10408739 chr2L_10408376_10408386;chr2L_10408739_10409132 2.52 5.15 1.77 1.43 2.72 0.00 1.50 1.33 2.26 6.67 0.00 0.93 1.27 1.27 2.05 0.95 0.00 0.65 1.19 2.31 1.40 3.33 17.54 3.88 0.00 1.42 31.82 38.46 2.13 10.53 1.05 7.32 4.65 1.13 NA 11.11 4.07 0.00 3.33 8.70 9.09 1.24 0.55 9.68 1.16 24.00 4.21 13.51 1.70 10.00 13.33 5.26 4.84 10.53 1.49 2.83 7.27 9.72 K cassette Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11837971_11840340 chr2R_11837971_11838662;chr2R_11838972_11840340 chr2R_11838663_11838971 chr2R_11837919_11837970;chr2R_11840341_11840725 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.77 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG30185 chr2R + chr2R_19432077_19432147 chr2R_19432076_19432077;chr2R_19432147_19432148 chr2R_19431771_19432076;chr2R_19432148_19432517 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.99 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6394546_6419543,I_chr2R_6404486_6419543,R_chr2R_6408775_6419537,I_chr2R_6409616_6419543,I_chr2R_6413368_6414281,I_chr2R_6419625_6419686,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6408783_6419543 chr2R_6408782_6408783;chr2R_6419543_6419544 chr2R_6408718_6408782;chr2R_6419544_6419624 62.07 62.07 73.33 67.50 80.00 72.73 77.27 66.67 73.21 30.43 89.47 64.10 52.00 82.61 77.27 84.00 62.50 65.38 62.96 75.93 66.67 20.00 62.71 60.00 47.37 72.22 54.90 57.75 33.33 57.89 66.67 46.88 27.37 71.43 45.71 40.00 55.77 54.84 51.72 49.25 26.32 66.67 71.43 58.54 34.21 44.74 42.86 40.85 79.59 57.50 55.10 65.52 78.57 55.56 60.71 53.33 76.19 65.12 K alternative_acceptor CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042888_5042960;chr2L_5042885_5042960 chr2L_5042891_5042960 chr2L_5042961_5043016;chr2L_5042835_5042884 77.97 74.07 76.00 75.86 85.71 78.95 81.82 70.27 79.25 71.43 90.91 80.00 84.62 79.17 68.00 84.09 80.00 84.21 75.86 77.97 68.75 85.71 83.33 67.74 76.00 86.36 69.23 80.00 72.73 72.41 76.67 85.29 73.53 75.61 80.77 79.17 85.71 73.68 83.33 77.97 73.68 73.17 87.50 81.58 82.86 79.59 74.07 81.82 77.55 80.95 70.73 63.16 66.67 71.43 83.33 65.52 76.67 74.55 N jcn_only_AD CG1494 chrX + chrX_21158242_21159147;chrX_21159059_21159147 chrX_21159081_21159147 chrX_21159148_21159527;chrX_21157788_21158241 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor crol,I_chr2L_11799403_11802904 chr2L - chr2L_11800323_11802904;chr2L_11800323_11802286;chr2L_11800323_11802343 chr2L_11800323_11802370 chr2L_11800155_11800322;chr2L_11802905_11803004 48.06 47.00 51.72 63.55 55.22 50.45 50.86 42.46 50.88 29.18 48.09 47.98 46.07 52.71 52.21 41.79 44.38 60.55 50.00 48.06 43.81 50.79 47.64 49.25 49.29 52.58 49.04 54.55 39.52 47.79 49.76 43.41 43.81 46.24 53.87 51.23 49.86 52.36 49.35 39.41 38.17 51.52 45.60 46.75 50.58 41.67 48.40 37.76 48.93 45.14 43.19 47.51 42.55 44.57 53.36 47.29 45.27 40.37 K intron_retention CG11299,I_chr2R_19619053_19619186 chr2R + chr2R_19620027_19620084 chr2R_19620026_19620027;chr2R_19620084_19620085 chr2R_19619916_19620026;chr2R_19620085_19620661 0.00 0.00 6.67 0.00 0.00 0.00 4.55 0.00 5.00 NA 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.94 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.23 2.56 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 3.77 2.33 K jcn_only_AA CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_243673_244182;chr4_243657_244182;chr4_243639_244182 chr4_243585_244182 chr4_244183_244282;chr4_243557_243584 0.00 0.00 2.70 0.00 2.56 0.00 0.00 0.99 1.48 NA NA 1.09 1.49 0.00 0.00 0.00 2.17 NA 1.49 1.08 3.85 3.03 0.00 0.00 NA 0.00 2.44 NA NA 0.00 2.06 5.00 NA 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA 3.57 0.00 NA 0.79 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor RpL34b,CG9356 chr3R - chr3R_5226745_5226917 chr3R_5226748_5226917 chr3R_5226918_5226997;chr3R_5226664_5226744 4.16 3.73 3.95 2.82 2.59 2.02 5.48 2.45 3.48 3.26 2.71 3.39 2.86 2.84 1.79 4.80 2.61 2.63 2.52 2.41 3.29 4.71 21.43 8.51 19.61 4.16 28.33 18.00 11.73 10.10 3.55 3.45 3.18 2.44 10.81 7.79 6.88 12.50 12.66 12.50 7.30 2.68 2.84 12.00 3.36 6.10 10.14 2.92 3.77 9.47 34.62 9.09 5.17 16.13 2.20 6.02 6.76 4.93 K intron_retention E_chr2L_20647810_20648188,CG2614 chr2L + chr2L_20656602_20656707 chr2L_20656601_20656602;chr2L_20656707_20656708 chr2L_20656439_20656601;chr2L_20656708_20656830 5.41 0.00 0.00 17.39 0.00 3.45 6.82 6.56 3.70 5.00 3.57 8.45 11.76 0.00 5.77 5.48 0.00 3.23 8.89 8.54 8.57 7.14 7.32 6.67 8.33 19.35 6.06 22.22 14.71 5.41 14.04 0.00 4.62 7.46 4.17 18.52 4.00 4.17 0.00 1.09 9.52 5.88 0.00 6.25 6.82 6.12 0.00 9.23 5.38 3.57 3.92 4.35 0.00 0.00 4.35 8.00 2.17 4.62 K alternative_donor P58IPK,CG8312 chr3R + chr3R_5413355_5413718 chr3R_5413359_5413718 chr3R_5413719_5415303;chr3R_5413245_5413354 100.00 100.00 100.00 98.82 98.63 98.53 98.72 100.00 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 98.18 98.51 97.62 100.00 100.00 100.00 100.00 98.31 98.25 98.89 99.07 98.53 100.00 98.80 100.00 100.00 100.00 98.04 98.67 99.10 98.85 100.00 100.00 98.85 99.29 100.00 100.00 100.00 98.86 100.00 100.00 100.00 98.65 100.00 100.00 100.00 98.41 100.00 98.39 98.94 100.00 K jcn_only_AD Moe,I_chrX_8774434_8775874,I_chrX_8774434_8791759 chrX - chrX_8774434_8791943 chrX_8774434_8791871 chrX_8774334_8774433;chrX_8791944_8791970 100.00 96.00 100.00 100.00 100.00 NA 97.06 98.31 98.04 NA NA 97.50 100.00 92.86 NA 97.44 100.00 NA 100.00 97.44 95.45 NA 96.30 NA NA 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K jcn_only_AD CG10602 chr2L - chr2L_18857404_18857587;chr2L_18857404_18857511 chr2L_18857404_18857541 chr2L_18857177_18857403;chr2L_18857588_18857700 14.32 7.50 13.89 9.62 2.50 17.65 14.81 10.94 12.00 NA 11.76 10.94 NA 6.82 27.91 12.50 15.22 15.62 8.33 9.09 20.00 15.15 8.47 10.53 16.13 6.45 10.00 2.50 25.71 10.00 15.00 30.43 40.62 14.75 33.33 28.57 6.67 3.33 5.26 19.66 20.69 10.71 25.00 16.67 21.43 16.13 8.33 29.31 6.58 10.00 15.15 10.42 10.71 NA 18.52 18.75 16.28 26.92 K alternative_donor eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341636_20342041;chr3L_20341509_20342041;chr3L_20341865_20342041;chr3L_20341486_20342041;chr3L_20341522_20342041;chr3L_20341751_20342041;chr3L_20341530_20342041;chr3L_20341629_20342041;chr3L_20341598_20342041;chr3L_20341759_20342041 chr3L_20341925_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 0.00 5.88 3.70 0.00 0.00 0.00 3.03 0.00 1.52 0.00 0.00 2.38 0.00 0.00 0.00 2.78 0.00 0.00 2.70 1.72 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chr2R_12650846_12659758,Sod2 chr2R - chr2R_12661312_12661368 chr2R_12661311_12661312;chr2R_12661368_12661369 chr2R_12661260_12661311;chr2R_12661369_12661392 100.00 98.84 98.68 99.31 98.78 98.55 100.00 99.30 98.54 97.44 97.33 99.41 98.82 100.00 100.00 100.00 98.95 96.61 100.00 97.58 97.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.82 100.00 100.00 99.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 98.78 95.92 97.86 98.39 100.00 97.96 100.00 98.46 98.00 100.00 99.09 98.89 K intron_retention CG3887 chr2L + chr2L_5011132_5011183 chr2L_5011131_5011132;chr2L_5011183_5011184 chr2L_5011056_5011131;chr2L_5011184_5011335 99.21 99.13 99.39 99.51 99.35 99.09 98.75 98.41 98.24 100.00 99.34 99.63 99.21 98.47 99.38 98.79 98.52 97.86 99.44 99.03 99.38 100.00 100.00 99.12 100.00 99.35 100.00 100.00 100.00 100.00 99.33 98.39 99.06 99.18 100.00 100.00 99.13 100.00 100.00 99.07 98.18 99.62 98.40 100.00 99.06 98.97 99.12 97.37 98.44 99.06 100.00 98.59 99.30 100.00 98.25 98.88 100.00 99.11 K jcn_only_AA CG10338,I_chr2L_18697359_18697402 chr2L + chr2L_18697359_18697420 chr2L_18697359_18697402 chr2L_18697259_18697358;chr2L_18697421_18697502 0.00 NA 0.00 5.71 NA NA 3.12 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 3.57 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA 0.00 4.76 NA 2.00 4.76 0.00 0.00 NA NA 0.00 0.00 4.35 4.76 NA NA NA 0.00 NA 0.00 0.00 K alternative_acceptor I_chr2R_4783150_4783708,Ggamma1,noncoding_5300 chr2R + chr2R_4789292_4789832 chr2R_4789292_4789641 chr2R_4789223_4789291;chr2R_4789833_4790635 100.00 100.00 98.57 100.00 100.00 100.00 100.00 100.00 99.32 100.00 100.00 100.00 100.00 100.00 98.84 100.00 100.00 100.00 99.03 100.00 100.00 100.00 98.08 100.00 100.00 98.70 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 97.37 98.25 98.86 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 97.37 98.08 96.97 95.65 100.00 98.77 100.00 100.00 100.00 K intron_retention Synd chr3R + chr3R_16664168_16664234 chr3R_16664167_16664168;chr3R_16664234_16664235 chr3R_16664047_16664167;chr3R_16664235_16664345 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Taz,I_chr2R_8641633_8641971,I_chr2R_8648027_8648303 chr2R - chr2R_8640859_8640932 chr2R_8640859_8640926 chr2R_8640618_8640858;chr2R_8640933_8641321 0.00 0.00 3.85 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 3.85 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA 2.13 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 3.45 0.00 NA 0.00 0.00 0.00 0.00 K alternative_donor CG31431 chr3R + chr3R_17696730_17697703;chr3R_17696581_17697703;chr3R_17696702_17697703 chr3R_17696656_17697703 chr3R_17697704_17697862;chr3R_17696406_17696580 7.84 6.41 11.82 6.79 7.69 6.98 13.17 3.69 11.71 0.00 5.68 8.99 3.06 8.82 8.94 5.84 8.64 8.62 8.47 4.82 1.20 11.32 9.64 10.67 7.84 8.82 6.74 4.35 29.09 12.96 3.85 12.90 5.06 6.25 7.55 6.82 3.57 9.09 8.33 8.16 6.17 9.17 9.30 4.60 6.15 9.17 4.76 9.85 7.39 9.43 8.82 10.00 7.69 2.50 7.81 5.88 9.23 13.00 K intron_retention RI_chr2L_8218680_8218853,Pvr,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8222519_8222580 chr2L_8222518_8222519;chr2L_8222580_8222581 chr2L_8222446_8222518;chr2L_8222581_8222830 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.81 1.54 0.00 1.04 1.06 1.04 0.00 0.65 0.00 0.00 0.00 0.57 0.86 0.00 0.00 0.00 0.00 0.00 0.38 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.89 1.85 0.32 0.00 0.00 0.00 0.00 0.62 0.55 0.00 0.00 0.00 0.29 0.42 0.93 0.46 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 K intron_retention Hairless chr3R + chr3R_16448221_16448305 chr3R_16448220_16448221;chr3R_16448305_16448306 chr3R_16448012_16448220;chr3R_16448306_16449020 32.00 35.00 42.86 32.00 47.06 36.36 29.17 45.95 31.03 13.64 23.81 41.18 29.17 31.58 26.67 38.71 34.38 46.15 28.12 34.69 26.32 19.51 45.16 39.13 31.58 36.84 54.84 36.00 31.58 29.41 40.00 7.14 21.74 28.26 35.71 46.15 28.12 42.86 21.43 25.00 NA 32.65 35.71 32.00 NA 35.71 NA 25.71 31.82 30.77 46.43 32.00 NA NA 44.00 NA 30.77 30.00 K intron_retention CG40127,I_chr2R_75348_75450 chr2R - chr2R_75198_75264 chr2R_75197_75198;chr2R_75264_75265 chr2R_74940_75197;chr2R_75265_75347 0.00 0.00 0.00 0.53 0.00 0.00 0.33 0.36 0.59 0.00 0.00 0.36 0.32 0.00 0.00 0.54 0.42 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.76 17.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.38 0.00 0.00 0.00 0.24 0.00 0.81 0.45 1.04 0.22 0.00 0.43 0.50 0.00 0.26 0.25 0.00 K alternative_acceptor CG7203,cdc14,RI_chr2L_7806524_7806667 chr2L - chr2L_7804916_7805059 chr2L_7804919_7805059 chr2L_7805060_7805788;chr2L_7804571_7804915 19.35 16.67 13.79 26.09 26.09 14.29 26.67 23.33 29.17 NA 23.08 19.35 23.08 27.78 11.11 19.05 16.00 25.00 26.09 23.68 29.17 15.38 17.65 25.00 NA 16.67 21.74 NA 21.43 22.22 16.67 14.29 18.18 19.35 16.67 15.79 17.14 17.39 18.92 18.18 17.65 21.05 15.00 18.75 36.36 23.81 16.67 20.00 19.51 13.04 18.52 30.77 12.50 5.88 23.08 25.00 20.00 27.59 K intron_retention alph,I_chr3R_25417890_25422962 chr3R + chr3R_25420067_25422962 chr3R_25420066_25420067;chr3R_25422962_25422963 chr3R_25419949_25420066;chr3R_25422963_25423062 0.88 0.00 0.00 1.95 1.67 0.00 1.88 0.43 0.58 2.47 0.00 0.77 1.48 0.75 0.66 0.88 1.69 0.00 0.00 0.47 1.46 2.06 0.47 0.00 0.00 1.59 0.60 4.40 0.00 1.45 1.27 0.91 1.33 1.79 2.22 1.57 0.00 1.35 1.14 1.14 1.98 1.63 0.95 0.57 0.87 0.00 0.00 1.55 1.40 1.39 0.00 1.92 0.00 0.00 1.22 0.00 0.00 0.00 K alternative_donor CG42557,F_chr3R_25759624_25759720,RI_chr3R_25759681_25759960 chr3R + chr3R_25759681_25759960 chr3R_25759812_25759960 chr3R_25759961_25760060;chr3R_25759581_25759680 98.18 97.67 97.92 97.56 96.88 93.02 100.00 97.50 97.59 96.43 92.50 100.00 97.30 97.56 97.87 100.00 100.00 97.87 98.00 97.98 100.00 95.74 98.18 100.00 100.00 100.00 100.00 100.00 95.31 97.37 100.00 100.00 98.28 98.57 100.00 100.00 100.00 100.00 100.00 100.00 97.26 100.00 100.00 98.08 97.44 98.99 98.18 100.00 100.00 96.00 97.56 96.67 97.83 97.83 100.00 98.11 98.67 99.13 K alternative_acceptor CG1646,RI_chr3R_24638209_24638280,I_chr3R_24641816_24641874 chr3R + chr3R_24637877_24638116;chr3R_24637877_24637958 chr3R_24637877_24637948 chr3R_24637841_24637876;chr3R_24638117_24638208 4.88 6.67 8.22 4.72 3.64 6.12 9.62 5.48 4.88 3.77 4.92 4.48 7.50 6.12 4.05 6.67 8.00 3.03 8.06 1.74 3.33 5.08 12.50 6.15 8.16 6.58 9.09 8.33 3.61 1.16 7.69 0.00 1.90 8.24 2.00 7.14 2.98 6.45 2.41 4.50 3.57 5.71 4.26 4.00 3.45 1.33 4.69 2.41 5.48 2.70 1.61 5.06 6.25 3.12 4.26 6.67 6.25 0.62 K intron_retention CG9339,I_chr2L_20877678_20903015,I_chr2L_20882465_20889794,I_chr2L_20903560_20918638,I_chr2L_20922613_20922685 chr2L - chr2L_20873891_20873956 chr2L_20873890_20873891;chr2L_20873956_20873957 chr2L_20873408_20873890;chr2L_20873957_20874177 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 5.41 0.00 3.12 0.00 NA 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 1.79 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mus309,CG6923 chr3R - chr3R_7567236_7567285 chr3R_7567235_7567236;chr3R_7567285_7567286 chr3R_7564927_7567235;chr3R_7567286_7567482 12.91 NA NA 30.77 NA NA 12.50 15.38 15.79 NA NA 0.00 NA NA NA 7.69 NA NA NA 4.76 NA NA 21.05 6.67 NA NA NA 35.71 NA NA 28.57 NA NA 5.88 NA 36.36 5.56 NA NA 6.67 NA 13.33 NA NA NA NA NA NA 0.00 NA NA NA NA NA 15.38 NA NA NA K jcn_only_AD RpS9,RI_chr3L_9504402_9504499,I_chr3L_9504402_9504516 chr3L - chr3L_9504402_9504599 chr3L_9504402_9504499 chr3L_9504302_9504401;chr3L_9504600_9504616 0.00 0.36 0.00 0.00 0.05 0.00 0.00 0.00 0.04 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.02 0.00 0.19 0.00 0.00 0.00 0.11 0.52 0.00 0.89 0.00 0.14 0.21 0.42 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.36 0.00 0.04 0.33 1.01 0.00 0.12 0.00 0.00 0.00 0.27 0.31 K alternative_acceptor CG3860,I_chr2R_19880382_19880479,I_chr2R_19880401_19880450,RI_chr2R_19882285_19882350 chr2R - chr2R_19880382_19880450 chr2R_19880401_19880450 chr2R_19880451_19880545;chr2R_19880314_19880381 0.00 3.45 0.00 0.00 0.00 0.00 0.00 2.13 1.92 3.85 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 NA 0.00 0.00 5.26 0.00 3.12 4.35 0.00 4.35 0.00 4.76 0.00 0.00 0.00 4.55 0.00 0.00 2.78 1.92 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.13 4.35 2.70 0.00 0.00 0.00 0.00 0.00 4.88 0.00 K intron_retention dgt1,CG7824 chr3R - chr3R_25680766_25681674 chr3R_25680765_25680766;chr3R_25681674_25681675 chr3R_25680427_25680765;chr3R_25681675_25682075 9.60 4.05 2.50 14.71 4.44 6.25 11.11 13.56 10.67 4.08 11.11 21.18 8.33 5.88 14.63 16.28 5.88 10.00 17.14 9.78 12.50 15.38 7.07 10.84 10.00 3.92 12.99 18.03 25.76 11.94 4.35 10.34 9.84 9.23 7.69 6.35 9.60 9.21 12.99 9.62 8.14 6.58 6.45 9.20 5.81 10.83 11.70 8.77 10.84 6.92 8.54 17.02 5.41 11.29 5.66 8.89 5.26 6.98 K alternative_acceptor CG3744,I_chr3R_20701248_20701968 chr3R - chr3R_20701248_20701968 chr3R_20701722_20701968 chr3R_20701969_20702068;chr3R_20701148_20701247 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 100.00 97.00 100.00 100.00 98.88 100.00 100.00 96.15 100.00 100.00 100.00 100.00 98.80 100.00 100.00 98.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Atg4,RI_chr2L_1082666_1082719 chr2L + chr2L_1082666_1082791 chr2L_1082666_1082788 chr2L_1082566_1082665;chr2L_1082792_1082819 97.73 95.83 96.30 100.00 100.00 NA 100.00 93.94 100.00 95.83 95.00 97.67 NA NA 92.00 NA NA 96.15 NA 97.78 NA 97.56 94.59 96.15 100.00 NA 100.00 100.00 100.00 96.97 96.30 NA 100.00 100.00 97.96 96.97 96.00 100.00 94.00 100.00 97.73 98.31 NA 97.06 100.00 100.00 98.78 82.61 97.96 100.00 100.00 100.00 94.29 94.92 97.62 97.67 92.98 100.00 K alternative_donor Keap1 chr3R - chr3R_12902616_12905144;chr3R_12902616_12905148 chr3R_12902616_12905594 chr3R_12902299_12902615;chr3R_12905595_12905636 100.00 NA NA NA NA NA 75.00 100.00 95.24 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 55.56 NA NA NA 100.00 100.00 NA NA NA NA NA 92.31 NA 90.91 NA NA NA NA NA 100.00 92.31 NA NA NA NA NA NA NA NA 100.00 K intron_retention CG14463 chr3R + chr3R_3826226_3826307 chr3R_3826225_3826226;chr3R_3826307_3826308 chr3R_3825620_3826225;chr3R_3826308_3826385 8.33 6.06 16.67 12.50 8.00 8.33 10.00 15.56 8.82 0.00 14.29 10.53 21.74 10.34 7.41 11.54 8.33 16.67 18.75 11.32 0.00 3.45 4.88 5.88 0.00 22.22 0.00 0.00 0.00 NA 10.71 10.00 0.00 18.75 3.85 9.09 2.22 0.00 0.00 4.55 15.38 17.50 12.90 0.00 0.00 9.26 7.41 10.53 11.94 6.67 0.00 7.14 0.00 0.00 8.33 8.33 8.93 7.69 K jcn_only_AA CG33298 chr2L + chr2L_9495657_9503592 chr2L_9495657_9496144 chr2L_9495488_9495656 88.48 NA NA 96.55 NA NA NA 86.96 92.59 NA NA 100.00 NA 90.00 NA 80.95 NA NA NA 95.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 74.19 NA NA NA NA NA NA NA 77.78 NA NA NA NA NA NA 85.00 NA NA NA NA NA NA NA NA NA K intron_retention CG8949,I_chrX_16964465_16964532,I_chrX_16971501_16971713 chrX - chrX_16964465_16964533 chrX_16964464_16964465;chrX_16964533_16964534 chrX_16964365_16964464;chrX_16964534_16964632 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6621 chr3R - chr3R_6717114_6717235 chr3R_6717113_6717114;chr3R_6717235_6717236 chr3R_6716816_6717113;chr3R_6717236_6717702 3.45 0.00 12.12 4.55 5.88 5.26 11.43 12.24 3.39 0.00 0.00 4.65 10.00 0.00 6.45 12.50 0.00 NA 3.23 5.26 7.69 5.71 5.00 0.00 3.45 12.50 4.55 2.94 3.23 0.00 8.00 4.00 2.22 6.06 0.00 2.63 0.00 0.00 0.00 3.12 0.00 3.12 8.70 9.76 0.00 7.69 0.00 10.71 6.12 0.00 5.00 3.33 0.00 NA 6.25 0.00 0.00 11.11 K intron_retention CG14425,Sxl,CG14425_Sxl,CEF_chrX_6984538_6992033 chrX - chrX_6986156_6992033 chrX_6986155_6986156;chrX_6992033_6992034 chrX_6985708_6986155;chrX_6992034_6992068 50.00 63.64 50.00 78.57 NA NA 45.45 44.44 38.24 NA NA 35.29 NA NA 30.77 33.33 NA NA 46.67 47.37 NA 90.91 60.00 NA NA NA NA NA NA NA 27.91 NA 53.33 52.38 NA 87.50 NA NA NA 78.57 NA 31.25 46.15 88.89 NA NA NA 78.95 33.33 NA 63.64 NA NA NA 53.85 NA NA NA K intron_retention CG1399,I_chr2R_3574133_3574191 chr2R - chr2R_3565240_3565502 chr2R_3565239_3565240;chr2R_3565502_3565503 chr2R_3564840_3565239;chr2R_3565503_3565909 95.24 87.80 95.24 98.55 89.74 97.50 98.21 93.59 98.94 97.44 96.55 98.31 97.14 92.31 88.89 89.80 91.67 87.18 97.92 92.41 88.89 100.00 98.51 92.42 100.00 97.06 98.00 95.00 93.33 87.27 96.49 93.18 94.87 94.37 97.67 97.78 95.52 92.50 95.31 95.56 94.64 97.62 91.43 91.80 95.92 96.83 97.73 92.75 94.67 98.68 95.77 92.16 88.89 88.89 97.83 97.30 87.93 76.62 K intron_retention alpha-Cat,I_chr3L_23319861_23321813,I_chr3L_23327841_23328002 chr3L - chr3L_23322024_23322329 chr3L_23322023_23322024;chr3L_23322329_23322330 chr3L_23321814_23322023;chr3L_23322330_23322498 100.00 100.00 100.00 100.00 100.00 100.00 99.26 99.33 99.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.04 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Mnt chrX + chrX_3593520_3593719 chrX_3593520_3593716 chrX_3593372_3593519;chrX_3593720_3593820 60.71 73.91 56.67 53.66 52.94 69.23 48.65 53.49 58.93 NA NA 59.62 NA NA 60.71 NA NA NA NA 58.14 48.00 47.06 63.33 53.57 65.22 NA NA NA NA 68.00 70.37 NA 65.91 58.33 NA NA 48.28 61.54 67.86 64.52 NA 57.45 NA 68.18 NA NA NA 58.82 66.67 NA 62.07 NA NA NA 65.62 NA NA 70.00 K cassette Zyx102EF,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1080463_1081398;chr4_1080463_1081366 chr4_1080463_1081038;chr4_1081261_1081366,chr4_1081261_1081398 chr4_1081039_1081260 chr4_1080446_1080462;chr4_1081399_1081402 100.00 100.00 100.00 87.88 100.00 100.00 87.10 100.00 97.14 NA 100.00 83.33 100.00 93.33 100.00 100.00 93.33 90.91 95.45 96.43 100.00 87.50 100.00 100.00 100.00 93.33 100.00 100.00 90.00 91.67 100.00 100.00 100.00 96.43 100.00 91.67 100.00 91.67 100.00 100.00 100.00 96.67 92.31 100.00 83.33 100.00 92.31 100.00 100.00 92.31 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor SAK chr3L - chr3L_21508757_21508877 chr3L_21508757_21508815 chr3L_21508661_21508756;chr3L_21508878_21508916 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 87.50 100.00 NA 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA K alternative_donor I_chr3R_11826508_11826910,GATAe chr3R + chr3R_11835130_11841949 chr3R_11838506_11841949 chr3R_11841950_11842287;chr3R_11834651_11835129 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Hcs,I_chr3R_1303481_1304607 chr3R + chr3R_1305295_1305354 chr3R_1305294_1305295;chr3R_1305354_1305355 chr3R_1305109_1305294;chr3R_1305355_1305504 14.29 5.26 21.74 7.14 17.65 14.29 13.79 24.00 7.50 33.33 13.04 9.76 8.70 6.67 9.52 18.18 5.56 15.00 7.69 7.02 22.22 32.14 17.65 9.09 17.65 15.00 45.45 41.67 NA 12.50 7.50 25.00 10.71 13.64 6.25 NA 18.92 13.04 11.11 13.64 30.00 12.07 15.79 19.23 16.67 NA 19.05 11.11 15.56 17.65 16.22 21.43 0.00 14.29 6.67 16.67 20.83 0.00 K intron_retention CG2924,I_chrX_2168373_2168893 chrX - chrX_2159989_2160068 chrX_2159988_2159989;chrX_2160068_2160069 chrX_2159910_2159988;chrX_2160069_2160217 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention cype chr2L + chr2L_5327677_5327743 chr2L_5327676_5327677;chr2L_5327743_5327744 chr2L_5327503_5327676;chr2L_5327744_5328063 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_donor CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4987241_4987906;chr2L_4987319_4987906 chr2L_4987298_4987906 chr2L_4987907_4988048;chr2L_4987159_4987240 7.89 5.88 2.50 9.09 3.70 9.68 4.65 8.93 5.48 9.52 8.33 3.03 12.50 8.33 5.88 8.51 4.55 5.26 6.45 8.33 7.41 41.46 6.00 7.69 12.20 7.89 13.64 17.65 17.07 8.57 8.33 7.14 5.13 6.45 7.69 9.80 5.77 4.55 8.47 7.14 8.57 6.25 12.00 4.65 7.41 7.69 11.11 4.35 4.05 21.43 6.38 8.33 10.53 13.64 3.03 8.33 14.29 13.16 K jcn_only_AA CG11334,I_chr3R_27287685_27288551,I_chr3R_27287691_27288117,F_chr3R_27287720_27288551,RI_chr3R_27288047_27288117 chr3R - chr3R_27287685_27288551 chr3R_27287691_27288551 chr3R_27288552_27288651;chr3R_27287620_27287684 98.91 100.00 96.97 98.77 96.15 96.20 96.67 97.44 99.12 96.97 100.00 99.03 100.00 98.28 100.00 97.37 94.87 96.43 100.00 98.73 100.00 NA 98.81 98.86 100.00 98.82 100.00 100.00 100.00 97.37 100.00 100.00 100.00 98.13 98.18 98.28 95.95 98.31 98.95 100.00 100.00 99.26 96.72 100.00 97.26 98.44 100.00 96.92 99.17 100.00 100.00 100.00 100.00 97.62 98.63 100.00 98.37 100.00 K intron_retention CG6236 chr3R - chr3R_11153785_11153869 chr3R_11153784_11153785;chr3R_11153869_11153870 chr3R_11153649_11153784;chr3R_11153870_11153988 29.02 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA 33.33 NA NA NA 30.77 NA NA NA NA NA NA NA NA NA NA 27.27 NA NA NA NA NA NA NA NA NA 22.22 K jcn_only_AA Aldh-III,RE_chr2R_3355332_3355720,I_chr2R_3356541_3356614,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3354556_3354987 chr2R_3354822_3354987 chr2R_3354988_3355138;chr2R_3354549_3354555 92.44 93.62 86.23 88.62 88.80 92.44 93.00 75.47 84.36 96.49 87.50 89.80 69.44 89.09 87.76 93.63 87.02 93.06 83.59 90.94 84.85 97.78 94.39 92.74 94.02 85.88 93.91 96.23 95.77 92.44 91.94 94.50 88.18 88.04 90.97 96.88 93.75 93.17 93.02 91.24 95.12 86.40 91.09 93.33 92.70 95.67 96.90 93.33 85.85 93.66 89.74 95.16 89.23 96.51 85.71 93.09 94.32 83.67 K multi_cassette lap,I_chr3R_3017854_3019314 chr3R + chr3R_3019411_3024049 chr3R_3019411_3019919;chr3R_3021618_3022015;chr3R_3022116_3023291;chr3R_3023382_3024049 chr3R_3019920_3021617;chr3R_3022016_3022115;chr3R_3023292_3023381 chr3R_3019315_3019410;chr3R_3024050_3024362 66.67 NA 100.00 100.00 NA NA 50.00 50.00 66.67 NA 50.00 50.00 50.00 50.00 NA NA NA NA 100.00 100.00 NA NA 100.00 NA 50.00 NA NA 50.00 NA NA NA NA NA 100.00 NA NA NA 0.00 100.00 100.00 NA 100.00 NA 50.00 NA NA 100.00 NA 100.00 NA NA NA NA NA 50.00 NA NA NA K jcn_only_AD RpL27A,E_chr2L_4457411_4457977,I_chr2L_4458058_4458120 chr2L - chr2L_4458058_4458288;chr2L_4458058_4458140;chr2L_4458058_4458162 chr2L_4458058_4458274 chr2L_4457978_4458057;chr2L_4458289_4458357 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.30 0.00 0.00 0.00 0.00 0.00 1.60 1.38 1.32 0.13 0.00 2.27 0.00 0.72 0.51 0.00 0.00 0.00 1.29 0.35 0.00 0.00 0.44 0.20 0.95 0.00 1.28 0.13 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 1.38 K jcn_only_AA CG32068 chr3L + chr3L_10657269_10657338 chr3L_10657269_10657327 chr3L_10657201_10657268;chr3L_10657339_10657404 100.00 100.00 99.24 100.00 100.00 100.00 99.28 99.64 98.90 100.00 100.00 100.00 100.00 99.28 98.73 100.00 100.00 100.00 99.42 99.67 98.43 100.00 98.20 100.00 100.00 100.00 100.00 96.61 100.00 100.00 100.00 100.00 99.19 99.59 98.25 100.00 100.00 100.00 100.00 100.00 100.00 99.21 99.15 100.00 99.31 99.48 100.00 100.00 100.00 99.24 100.00 98.98 100.00 100.00 99.48 100.00 100.00 100.00 K alternative_donor R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083458_8089184;chr2L_8083522_8089184;chr2L_8083588_8089184;chr2L_8083687_8089184 chr2L_8083637_8089184 chr2L_8089185_8089284;chr2L_8083444_8083457 34.21 18.18 37.50 28.12 25.00 38.89 37.78 28.89 38.46 37.50 42.86 28.89 20.00 37.50 40.00 26.56 38.89 31.58 23.33 34.21 54.55 20.83 23.53 37.50 27.27 21.05 40.00 37.50 36.36 37.50 29.63 15.38 37.14 29.27 38.46 40.00 28.57 16.67 33.33 35.71 22.73 39.39 34.78 40.00 33.33 36.84 14.29 34.62 31.71 28.57 42.86 42.86 28.57 20.00 29.63 40.00 40.00 27.27 K alternative_acceptor dm chrX + chrX_3267757_3268976 chrX_3267757_3268972 chrX_3267207_3267756;chrX_3268977_3270266 93.33 NA NA 100.00 NA NA 100.00 87.50 93.75 NA NA 100.00 NA NA NA 95.24 NA NA 88.89 87.50 NA 100.00 NA NA NA NA 90.91 87.50 88.89 100.00 NA NA 100.00 93.33 NA 77.78 NA NA NA 84.62 NA 76.92 NA 100.00 NA NA NA 82.61 93.33 NA NA NA NA NA NA NA NA NA K cassette MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17389985_17397622;chr2R_17389985_17397610;chr2R_17389985_17398371 chr2R_17389985_17394826;chr2R_17395228_17397610,chr2R_17395228_17398371,chr2R_17395228_17397622 chr2R_17394827_17395227 chr2R_17389891_17389984;chr2R_17398372_17398565 95.24 97.14 95.24 82.14 100.00 100.00 88.89 85.71 88.37 96.43 73.68 94.29 90.91 100.00 100.00 84.21 94.74 95.24 92.31 97.14 90.91 88.75 91.23 98.08 100.00 88.24 94.12 76.60 88.57 100.00 95.45 100.00 91.89 100.00 97.14 89.74 100.00 91.30 93.18 97.96 96.30 93.62 92.31 93.94 96.15 97.50 100.00 96.67 97.14 92.11 97.50 100.00 96.30 100.00 94.44 100.00 90.20 100.00 K jcn_only_AD xmas-1,xmas-2 chrX - chrX_17048134_17049045 chrX_17048134_17048464 chrX_17048122_17048133;chrX_17049046_17051545 4.10 NA NA NA NA NA NA NA NA 3.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.35 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N jcn_only_AD CG8801 chr2R - chr2R_5285964_5286088 chr2R_5285964_5286020 chr2R_5285916_5285963;chr2R_5286089_5286206 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13413922_13414338;chr2R_13413919_13414338 chr2R_13413823_13414338 chr2R_13414339_13414406;chr2R_13412209_13413822 1.11 0.00 2.27 3.41 3.09 1.71 2.34 1.14 2.02 0.00 3.41 0.41 1.02 1.11 0.80 0.00 1.83 1.94 0.00 0.90 2.91 0.00 1.29 0.00 0.00 0.93 1.20 4.17 3.12 1.40 0.00 0.00 0.95 0.00 0.00 0.00 1.10 0.78 1.58 0.00 1.32 1.28 1.90 0.75 0.85 1.52 0.00 0.61 1.65 1.12 1.21 1.30 1.06 0.00 1.46 0.00 2.50 2.65 K alternative_acceptor CG9855,RI_chr3R_222522_222581,RI_chr3R_222525_222604,I_chr3R_223384_223429 chr3R - chr3R_222528_222581;chr3R_222522_222581 chr3R_222525_222581 chr3R_222582_222650;chr3R_222457_222521 88.24 85.71 81.82 87.80 88.24 86.36 84.38 88.89 87.23 91.67 89.47 85.71 88.24 88.00 83.33 92.59 85.71 90.48 86.96 86.05 84.21 86.27 90.91 87.50 90.91 91.67 91.67 80.95 87.50 93.75 88.89 88.57 88.37 87.10 89.47 92.86 87.50 92.59 94.12 83.93 89.13 95.56 90.00 93.10 81.82 88.24 86.36 85.33 84.78 84.38 93.33 91.30 87.50 88.89 96.15 88.57 88.89 82.05 K jcn_only_AA Socs16D chrX - chrX_17717337_17717410 chrX_17717352_17717410 chrX_17717411_17719514;chrX_17717224_17717336 4.29 4.29 7.14 5.66 6.52 9.38 1.64 5.17 0.98 3.57 5.41 5.13 4.44 2.17 2.33 8.93 5.71 0.00 6.82 2.06 2.33 1.82 6.86 3.75 7.55 0.00 2.67 6.78 2.41 6.49 7.14 3.33 1.85 5.63 1.92 7.55 0.00 3.41 3.00 3.25 2.44 3.92 5.56 6.85 1.64 5.81 1.54 4.92 6.76 0.00 3.49 4.35 8.82 4.65 0.00 0.00 7.14 4.76 K alternative_acceptor I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_927771_929704,CG32021,RI_chr4_928180_928245,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_928180_928245;chr4_928193_928245 chr4_928177_928245 chr4_928246_928314;chr4_928109_928176 46.94 28.12 48.89 21.79 52.50 52.27 59.50 35.48 46.94 46.30 55.00 39.58 40.54 28.57 40.51 42.86 40.54 54.35 54.35 38.37 56.82 32.76 46.94 50.00 46.15 34.69 28.45 31.46 47.44 51.90 54.00 52.63 26.15 44.57 51.56 41.33 54.43 41.67 47.19 64.34 36.36 46.24 48.00 59.66 54.72 52.70 50.00 55.06 38.14 54.43 61.25 58.18 39.29 54.05 40.00 50.00 46.67 45.83 K alternative_donor Rab1,I_chr3R_17093463_17094644,I_chr3R_17094214_17094492,I_chr3R_17099005_17099062 chr3R - chr3R_17093463_17094644 chr3R_17093463_17094492 chr3R_17093363_17093462;chr3R_17094645_17094744 100.00 100.00 100.00 100.00 100.00 99.66 100.00 99.83 99.86 99.03 100.00 99.81 100.00 100.00 99.71 100.00 99.67 100.00 99.74 99.83 100.00 99.50 100.00 99.67 100.00 100.00 100.00 98.74 100.00 99.44 99.74 100.00 100.00 99.83 100.00 100.00 100.00 100.00 99.51 99.68 100.00 99.83 99.63 99.66 100.00 100.00 100.00 99.19 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.70 99.36 K alternative_donor Vrp1,I_chr2R_17997529_17997692 chr2R - chr2R_17997529_17997710 chr2R_17997529_17997692 chr2R_17997429_17997528;chr2R_17997711_17997792 2.97 4.00 2.94 0.00 4.00 3.12 4.76 2.94 1.32 4.35 4.76 2.90 3.85 0.00 6.25 0.00 0.00 3.23 3.45 2.60 3.33 4.35 2.00 4.44 2.13 5.26 10.00 3.45 2.70 1.89 4.17 3.33 1.37 3.57 6.25 0.00 3.23 3.57 1.54 2.70 5.41 2.97 0.00 2.50 0.00 2.70 2.50 6.00 3.23 0.00 2.38 0.00 0.00 3.85 2.56 4.35 2.86 5.17 K jcn_only_AA CG8600,eco chr3L - chr3L_7327555_7327641 chr3L_7327570_7327641 chr3L_7327642_7327709;chr3L_7327490_7327554 98.80 100.00 100.00 96.34 100.00 100.00 97.01 98.39 97.35 100.00 100.00 96.30 100.00 100.00 97.92 98.08 98.00 100.00 96.77 100.00 100.00 99.16 98.36 99.36 98.85 98.08 100.00 100.00 99.17 99.07 98.51 99.15 96.95 100.00 96.94 96.08 98.43 97.32 98.51 99.05 98.90 97.94 100.00 98.56 96.43 98.44 97.37 98.86 95.51 100.00 98.80 98.77 98.51 98.45 96.30 100.00 99.32 100.00 K alternative_donor Lnk,RI_chr3R_21714780_21715376 chr3R + chr3R_21717757_21718170 chr3R_21717790_21718170 chr3R_21718171_21718878;chr3R_21716440_21717756 96.30 100.00 92.86 94.87 92.31 94.74 100.00 94.92 93.33 94.59 100.00 98.18 95.83 96.00 92.00 100.00 94.44 94.44 96.30 98.53 100.00 95.00 98.00 93.75 94.29 95.24 97.56 87.10 98.59 97.62 97.73 96.30 96.74 97.92 97.56 93.62 97.44 96.55 92.98 75.86 97.06 95.16 100.00 94.74 92.21 97.54 94.12 97.24 98.08 95.92 97.87 96.97 97.14 96.67 100.00 91.67 95.74 95.03 K intron_retention gammaCop,rod chr3R + chr3R_27398001_27398222 chr3R_27398000_27398001;chr3R_27398222_27398223 chr3R_27397876_27398000;chr3R_27398223_27398878 0.00 0.00 0.00 6.00 0.00 0.00 6.82 1.67 0.00 0.00 0.00 3.61 0.00 0.00 5.00 1.27 0.00 0.00 0.00 2.47 0.00 0.00 3.92 0.00 11.54 5.13 5.88 9.30 12.50 0.00 1.41 0.00 0.00 0.00 4.44 0.00 2.94 0.00 0.00 1.19 2.94 0.00 0.00 6.35 0.00 7.14 4.88 3.64 2.44 0.00 0.00 3.45 0.00 0.00 4.08 0.00 2.17 0.00 K intron_retention CG14194 chrX + chrX_19087903_19087980 chrX_19087902_19087903;chrX_19087980_19087981 chrX_19087600_19087902;chrX_19087981_19088051 1.75 2.86 4.05 0.00 3.12 1.41 2.56 3.45 3.68 3.64 0.00 1.72 3.28 3.77 0.00 1.15 0.00 0.00 5.26 0.69 1.64 3.70 1.18 1.32 3.92 8.00 7.89 13.11 10.47 0.00 0.00 0.00 1.02 1.96 0.00 4.17 0.00 0.00 1.18 1.75 10.00 2.59 0.00 2.22 0.00 4.71 0.00 2.17 2.92 8.89 1.89 0.00 0.00 0.00 2.35 0.00 0.00 4.00 K alternative_donor CG42542,I_chr3R_11022467_11024586,I_chr3R_11022501_11024586,RI_chr3R_11023231_11024586,I_chr3R_11024452_11024586 chr3R + chr3R_11022729_11024586 chr3R_11023020_11024586 chr3R_11024587_11024686;chr3R_11022716_11022728 73.34 NA NA NA NA NA NA NA 80.00 NA NA 66.67 NA NA NA 80.00 NA NA NA 57.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA 83.33 NA NA NA NA NA NA NA NA NA K intron_retention Cip4,I_chr3L_4325411_4326640,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4325411_4326983 chr3L_4325410_4325411;chr3L_4326983_4326984 chr3L_4325311_4325410;chr3L_4326984_4327170 0.00 0.00 0.00 2.17 0.00 0.00 0.78 0.00 0.71 0.00 0.00 1.89 0.00 0.00 1.38 1.57 0.00 1.61 0.00 3.43 0.00 0.00 1.28 0.00 0.00 0.00 1.03 0.00 1.43 0.00 0.00 0.00 1.02 1.55 0.00 0.00 1.60 0.00 1.98 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 K intron_retention CG4616 chr2R + chr2R_9095699_9095757 chr2R_9095698_9095699;chr2R_9095757_9095758 chr2R_9095156_9095698;chr2R_9095758_9097974 11.43 11.76 0.00 29.41 NA NA 15.00 14.29 16.67 NA NA 17.39 0.00 0.00 17.65 10.71 NA 30.77 NA 21.05 NA NA 9.09 0.00 NA NA 29.41 11.76 NA NA 28.57 NA 17.39 14.29 7.14 0.00 NA 5.56 9.09 9.09 12.50 10.00 NA NA 13.33 0.00 15.79 25.00 9.09 NA 11.11 NA 6.67 NA 13.33 4.76 0.00 0.00 K intron_retention Myo61F,I_chr3L_1330291_1331279,RI_chr3L_1330929_1331041,msd1,l(3)02640 chr3L + chr3L_1331819_1331873 chr3L_1331818_1331819;chr3L_1331873_1331874 chr3L_1331772_1331818;chr3L_1331874_1332324 7.41 7.41 7.69 4.20 0.00 3.70 5.77 7.07 6.83 7.69 4.88 4.86 10.64 3.51 8.75 2.25 6.67 6.56 8.89 2.50 6.67 13.33 9.26 8.47 17.14 9.68 22.73 22.73 5.26 6.52 11.11 3.57 5.56 5.22 14.29 26.09 10.00 10.81 5.06 10.14 12.24 5.11 8.47 6.06 4.00 10.91 12.12 2.47 6.77 9.52 6.06 6.67 7.41 15.15 10.17 12.00 8.70 5.51 K intron_retention CG10722 chr2L + chr2L_20094354_20094438 chr2L_20094353_20094354;chr2L_20094438_20094439 chr2L_20094051_20094353;chr2L_20094439_20095939 0.00 0.00 0.00 2.44 0.00 0.00 0.00 1.10 1.77 4.35 0.00 1.18 4.35 0.00 1.82 1.67 0.00 0.00 0.00 1.04 0.00 0.00 0.00 1.67 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 1.27 0.00 0.00 0.00 1.96 2.22 0.00 0.00 K intron_retention CG5961,RI_chr3R_8285626_8285694,I_chr3R_8285631_8285980 chr3R - chr3R_8285631_8285694 chr3R_8285630_8285631;chr3R_8285694_8285695 chr3R_8285531_8285630;chr3R_8285695_8285734 0.00 0.00 NA NA NA NA 0.00 0.00 7.14 NA NA NA NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA 9.52 0.00 NA NA 0.00 12.50 NA NA 0.00 NA NA 8.70 NA NA 0.00 NA NA 7.69 NA 0.00 NA 0.00 NA 5.56 NA 0.00 0.00 NA 10.00 0.00 0.00 0.00 NA 0.00 0.00 7.69 K intron_retention Zasp52,I_chr2R_11661472_11663280,I_chr2R_11690993_11701987 chr2R - chr2R_11663013_11664682 chr2R_11663012_11663013;chr2R_11664682_11664683 chr2R_11662799_11663012;chr2R_11664683_11664791 5.88 2.70 8.57 5.88 6.25 8.33 11.11 10.87 8.43 7.89 15.00 5.26 0.00 16.13 17.24 14.29 8.70 20.00 20.00 7.35 12.90 7.02 4.48 3.45 2.70 4.76 10.11 8.62 6.06 5.13 9.09 5.77 4.35 3.28 4.65 3.70 4.43 2.74 3.23 2.19 7.14 8.25 16.67 7.45 1.00 1.03 2.78 4.59 10.96 1.64 6.00 0.00 1.82 3.23 17.65 0.00 4.35 3.70 K intron_retention Ac78C,F_chr3L_21141024_21153737 chr3L - chr3L_21131358_21131430 chr3L_21131357_21131358;chr3L_21131430_21131431 chr3L_21130954_21131357;chr3L_21131431_21131611 0.00 0.00 0.00 1.37 0.00 2.08 4.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 K jcn_only_AD RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12914849_12916177;chr2R_12914834_12916177;chr2R_12914941_12916177 chr2R_12914845_12916177 chr2R_12916178_12916526;chr2R_12914830_12914833 77.78 NA NA 75.76 NA NA 75.00 76.92 74.42 NA NA 76.74 72.73 84.85 NA 80.95 NA NA 77.27 NA NA 82.61 76.00 NA NA NA NA NA 72.00 NA 83.87 NA NA 85.71 NA 73.91 NA NA NA 78.26 NA 82.76 90.00 85.71 NA 57.14 NA 73.91 80.95 NA 79.17 NA NA NA 85.71 NA NA 77.78 K jcn_only_AA CG5261,I_chr2L_7428611_7428877 chr2L + chr2L_7428680_7428778;chr2L_7428680_7428925 chr2L_7428680_7428877 chr2L_7428612_7428679;chr2L_7428926_7428977 98.31 99.32 97.64 98.22 100.00 97.17 98.77 99.39 98.52 98.65 99.19 98.57 98.57 98.67 98.09 100.00 98.84 100.00 97.47 98.80 99.11 92.91 98.81 96.82 95.18 97.80 98.52 95.74 97.44 97.62 96.18 93.62 96.33 98.08 98.70 99.19 97.58 99.35 98.54 99.24 100.00 97.69 100.00 99.08 94.92 98.23 98.14 95.52 97.75 97.98 99.35 98.31 97.35 93.20 99.21 100.00 97.67 96.10 K intron_retention Pcf11,RI_chr2R_10753287_10754988 chr2R - chr2R_10753272_10754988 chr2R_10753271_10753272;chr2R_10754988_10754989 chr2R_10753187_10753271;chr2R_10754989_10755088 43.75 NA NA 50.00 NA NA NA 45.45 40.00 NA NA 45.45 NA NA NA NA NA NA NA 23.08 NA 50.00 25.00 NA NA NA NA NA NA NA NA NA NA 57.14 NA NA NA NA NA 33.33 NA 43.75 NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA K intron_retention noncoding_16922 chr3R - chr3R_11116170_11116223 chr3R_11116169_11116170;chr3R_11116223_11116224 chr3R_11116026_11116169;chr3R_11116224_11116516 73.33 88.89 88.89 65.00 NA NA 95.65 68.18 84.62 70.00 NA 73.33 NA 77.78 92.86 93.33 NA NA NA 66.67 58.33 61.54 92.31 66.67 NA NA 81.82 70.00 NA 88.89 75.00 NA 73.33 86.67 50.00 86.67 69.23 NA NA 55.56 NA 65.00 NA 66.67 5.88 NA NA 52.00 75.00 NA 77.78 NA NA NA 75.00 NA 46.15 25.93 K jcn_only_AA cals,I_chr4_1139644_1142084,RI_chr4_1141233_1142084 chr4 - chr4_1136521_1136581 chr4_1136524_1136581 chr4_1136582_1136705;chr4_1135886_1136520 30.77 23.68 24.32 27.47 NA 36.36 36.54 26.92 36.28 34.62 35.00 25.35 35.38 30.91 NA 30.77 23.33 45.45 38.98 29.17 NA NA 24.14 30.43 NA NA 40.00 NA NA 33.33 28.57 23.08 16.67 31.07 38.10 NA 42.31 27.27 NA 29.79 22.73 37.80 33.33 39.58 NA 40.74 25.00 25.00 34.23 28.26 25.00 16.67 NA 44.00 24.49 40.54 33.33 21.05 K intron_retention meso18E,I_chrX_19601491_19601568 chrX - chrX_19601498_19601568 chrX_19601497_19601498;chrX_19601568_19601569 chrX_19601429_19601497;chrX_19601569_19601635 6.83 6.34 6.42 7.01 4.95 8.26 8.42 5.77 4.71 7.21 7.76 5.70 7.59 3.61 11.93 8.51 6.49 5.21 5.83 4.92 8.41 12.36 7.60 5.63 9.63 9.57 13.89 17.74 32.58 4.17 6.34 5.81 3.93 7.64 7.63 17.48 5.12 4.68 5.56 5.33 11.50 6.53 7.14 7.14 4.60 5.60 6.19 6.83 6.99 8.33 6.73 8.00 8.09 9.15 5.08 7.14 5.65 3.55 K intron_retention CG5899,I_chr2L_9911150_9911296 chr2L - chr2L_9912286_9912343 chr2L_9912285_9912286;chr2L_9912343_9912344 chr2L_9912125_9912285;chr2L_9912344_9912644 0.00 0.00 0.00 0.00 2.27 4.35 0.00 0.00 0.00 0.00 0.00 4.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 7.41 0.00 0.00 0.00 0.00 0.00 0.76 0.00 NA 3.23 0.00 0.00 11.43 0.00 0.00 0.00 2.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K alternative_donor CG8067,RI_chr2R_9871650_9871702 chr2R + chr2R_9871646_9871702 chr2R_9871650_9871702 chr2R_9871703_9871802;chr2R_9871550_9871645 5.88 6.67 5.26 2.56 0.00 NA 2.38 2.70 6.52 NA 4.35 3.23 6.67 12.50 8.00 0.00 NA 5.00 3.23 6.45 14.29 5.88 11.76 7.14 NA 5.88 10.53 6.67 NA 5.88 20.00 NA 3.23 3.70 NA 7.69 4.35 NA 7.41 3.85 NA 2.78 NA NA 5.56 5.88 6.67 NA 7.32 NA 8.70 7.14 NA NA 0.00 7.14 3.70 13.04 K jcn_only_AD CG3077 chr2L - chr2L_2764442_2764507 chr2L_2764442_2764504 chr2L_2764373_2764441;chr2L_2764508_2764573 100.00 100.00 98.15 100.00 100.00 100.00 100.00 100.00 99.12 100.00 100.00 100.00 100.00 97.06 100.00 97.37 100.00 100.00 100.00 100.00 97.92 99.53 100.00 99.41 100.00 100.00 99.01 100.00 99.13 100.00 97.56 100.00 99.14 100.00 100.00 100.00 99.38 100.00 99.38 100.00 98.78 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 99.25 99.13 100.00 100.00 100.00 100.00 100.00 100.00 97.73 K intron_retention CG17683,I_chr2R_18774_18869 chr2R + chr2R_18774_18826 chr2R_18773_18774;chr2R_18826_18827 chr2R_18768_18773;chr2R_18827_18997 28.57 23.08 NA 23.81 NA NA 26.32 32.14 31.03 NA NA 33.33 17.65 28.57 NA 40.00 27.27 NA 50.00 31.58 NA NA 16.67 NA NA NA 61.11 NA NA NA 30.77 NA NA 38.10 21.43 NA NA NA NA 26.67 NA 17.65 41.67 13.33 NA NA 7.69 NA 37.04 NA NA NA NA NA 30.77 NA NA 20.00 K intron_retention Myo31DF,I_chr2L_10506249_10506683,I_chr2L_10506446_10506542 chr2L - chr2L_10492500_10492556 chr2L_10492499_10492500;chr2L_10492556_10492557 chr2L_10491823_10492499;chr2L_10492557_10492714 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.43 0.36 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.52 1.30 0.40 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.29 0.00 0.00 0.83 0.00 0.37 0.00 0.00 0.32 K jcn_only_AA l(3)neo18 chr3L - chr3L_12131045_12131115 chr3L_12131064_12131115 chr3L_12131116_12131345;chr3L_12130938_12131044 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.34 0.33 0.00 0.00 0.42 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.48 0.65 0.00 0.00 0.29 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.60 0.66 0.00 0.55 0.49 0.00 0.00 0.00 0.00 0.38 0.00 K alternative_donor drd chrX + chrX_15029850_15029991 chrX_15029921_15029991 chrX_15029992_15030308;chrX_15029558_15029849 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 93.33 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA NA NA NA 100.00 100.00 N alternative_acceptor I_chrX_16309561_16309689,hang,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16323441_16323563;chrX_16323441_16323548 chrX_16323441_16324653 chrX_16323093_16323440;chrX_16324654_16324797 83.33 81.69 90.79 83.81 88.52 86.54 84.55 92.91 82.61 78.85 89.80 84.17 83.08 85.48 81.82 81.37 88.00 87.32 87.01 81.87 92.75 52.55 84.47 79.12 81.08 89.06 85.32 81.69 69.51 79.80 89.55 81.58 72.95 88.03 78.18 74.39 77.61 81.05 81.16 79.82 89.36 84.87 88.71 76.67 72.97 86.00 84.44 71.43 86.82 83.72 85.60 81.25 82.61 80.00 86.42 83.87 83.33 70.97 K alternative_donor Hr78,I_chr3L_21490089_21490390 chr3L - chr3L_21488969_21489526 chr3L_21488969_21489520 chr3L_21488699_21488968;chr3L_21489527_21489841 83.33 68.75 75.00 78.57 91.67 83.33 66.67 81.25 83.87 100.00 75.00 80.00 81.82 66.67 81.25 87.50 81.82 88.89 77.78 73.91 83.33 60.00 92.86 75.00 NA NA 78.95 88.89 91.67 NA 91.67 87.50 77.27 94.44 88.89 87.50 80.00 90.00 85.19 68.42 90.91 83.33 NA 90.91 76.47 71.43 83.33 92.86 78.95 100.00 82.35 88.89 87.50 88.89 78.95 81.82 86.67 63.64 K alternative_donor vig chr2L - chr2L_15067690_15067915;chr2L_15067690_15067995;chr2L_15067690_15067868;chr2L_15067690_15068029;chr2L_15067690_15067999 chr2L_15067690_15067952 chr2L_15066937_15067689;chr2L_15068030_15068031 3.45 5.88 0.00 3.45 5.56 5.88 3.45 9.38 3.64 5.26 4.76 5.00 5.56 4.76 0.00 3.23 0.00 6.25 0.00 3.57 4.17 2.94 0.00 0.00 0.00 0.00 0.00 5.41 10.71 0.00 0.00 11.76 7.50 2.78 0.00 11.11 5.56 7.69 0.00 8.33 5.26 2.56 5.88 3.33 5.56 0.00 0.00 4.65 2.22 0.00 0.00 7.69 0.00 0.00 3.85 0.00 0.00 4.65 K intron_retention NELF-A chr3R + chr3R_17049802_17050497 chr3R_17049801_17049802;chr3R_17050497_17050498 chr3R_17049403_17049801;chr3R_17050498_17050752 4.17 10.53 3.85 7.89 0.00 0.00 10.81 9.09 2.44 NA 5.56 2.38 16.67 0.00 0.00 0.00 0.00 NA 8.70 6.67 NA 25.00 0.00 4.35 9.68 3.45 10.26 16.67 4.00 6.90 5.00 0.00 0.00 6.90 8.33 6.06 5.26 8.33 0.00 2.70 NA 8.11 NA 0.00 0.00 0.00 5.56 16.67 0.00 7.69 6.98 4.00 0.00 0.00 4.00 0.00 NA NA K intron_retention p120ctn,I_chr2R_482968_494268,I_chr2R_487593_493262 chr2R + chr2R_496580_496650 chr2R_496579_496580;chr2R_496650_496651 chr2R_495864_496579;chr2R_496651_496821 100.00 100.00 100.00 100.00 100.00 100.00 99.09 100.00 100.00 100.00 100.00 99.05 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 96.55 100.00 98.77 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 98.44 97.78 98.88 98.15 97.96 100.00 100.00 100.00 97.73 99.30 100.00 100.00 100.00 100.00 100.00 98.33 100.00 100.00 100.00 K intron_retention VhaPPA1-1,I_chr3R_10728645_10728933 chr3R - chr3R_10729614_10729672 chr3R_10729613_10729614;chr3R_10729672_10729673 chr3R_10729545_10729613;chr3R_10729673_10729699 0.44 0.00 0.70 1.57 0.00 0.54 0.25 0.88 0.62 0.00 0.00 0.76 0.00 0.31 0.22 0.00 0.00 0.60 0.00 0.58 0.58 3.28 0.97 0.29 2.30 3.26 0.96 0.97 12.17 0.00 0.21 0.67 0.62 0.79 1.40 0.78 0.62 0.99 0.36 0.44 1.96 0.40 0.00 0.43 0.25 0.00 0.00 0.62 0.53 0.00 0.50 0.00 0.00 0.40 0.00 1.23 0.00 0.28 K intron_retention brp chr2R + chr2R_5417712_5419850 chr2R_5417711_5417712;chr2R_5419850_5419851 chr2R_5417595_5417711;chr2R_5419851_5419881 15.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG30373 chr2R - chr2R_4052012_4052072 chr2R_4052011_4052012;chr2R_4052072_4052073 chr2R_4051948_4052011;chr2R_4052073_4052171 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD RI_chrX_1796525_1796585,mip130,I_chrX_1820956_1821011,CG11596 chrX + chrX_1821927_1822366 chrX_1821953_1822366 chrX_1822367_1822613;chrX_1821726_1821926 95.52 94.64 98.44 91.40 98.82 91.84 94.59 96.84 94.54 93.22 97.18 100.00 96.88 96.67 96.67 95.90 97.14 98.21 97.09 95.33 96.20 92.16 98.32 100.00 94.74 94.25 96.12 97.92 87.50 92.55 83.87 94.87 94.51 95.21 94.12 94.20 97.16 94.44 97.02 94.69 95.52 95.85 96.97 88.73 92.59 94.39 98.59 81.93 97.01 90.36 95.31 98.46 98.61 90.36 98.31 99.05 98.10 92.98 K jcn_only_AA Fs(2)Ket,I_chr2L_20734991_20735252,I_chr2L_20735091_20735305,I_chr2L_20735170_20735252,I_chr2L_20738976_20749527 chr2L + chr2L_20735091_20735305 chr2L_20735091_20735252 chr2L_20735070_20735090;chr2L_20735306_20735352 100.00 100.00 100.00 97.70 100.00 96.49 97.98 100.00 98.48 NA 100.00 99.25 100.00 100.00 100.00 100.00 98.73 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 98.80 NA 100.00 99.23 100.00 100.00 95.45 96.88 100.00 98.28 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 99.30 100.00 98.55 100.00 100.00 100.00 100.00 100.00 100.00 NA N jcn_only_AA I_chrX_16309561_16309689,hang,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16323441_16323563;chrX_16323441_16324653 chrX_16323441_16323548 chrX_16323093_16323440;chrX_16324654_16324797 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4078,I_chrX_5645012_5645067,F_chrX_5650884_5651894 chrX + chrX_5643575_5643769 chrX_5643574_5643575;chrX_5643769_5643770 chrX_5643027_5643574;chrX_5643770_5644433 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG13933,I_chr3L_1773911_1773984 chr3L - chr3L_1773527_1773577 chr3L_1773526_1773527;chr3L_1773577_1773578 chr3L_1773423_1773526;chr3L_1773578_1773910 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 NA 2.50 5.41 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 16.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 9.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 12.00 0.00 0.00 K alternative_acceptor bon chr3R + chr3R_16435123_16435685 chr3R_16435123_16435661 chr3R_16434948_16435122;chr3R_16435686_16436022 7.69 8.20 5.77 9.09 3.03 2.44 7.69 4.48 7.69 15.15 6.38 6.25 41.38 6.25 9.62 9.80 5.26 7.14 12.07 5.68 2.17 20.45 9.30 12.24 2.56 6.98 6.41 8.33 10.81 8.77 8.16 3.57 6.90 12.70 7.32 7.69 9.33 7.55 6.74 12.31 4.35 7.77 8.57 7.32 8.70 2.38 8.00 13.79 10.94 5.56 7.87 9.68 4.76 5.26 5.56 4.65 8.11 9.68 K intron_retention Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19562729_19562877 chr2R_19562728_19562729;chr2R_19562877_19562878 chr2R_19562630_19562728;chr2R_19562878_19562988 0.90 0.00 1.69 1.77 0.00 0.68 2.13 1.19 1.28 0.00 1.72 1.75 0.00 0.70 1.83 0.00 0.00 1.37 0.00 0.00 3.23 7.66 2.08 0.00 2.01 1.08 0.90 0.00 3.17 0.56 0.39 0.00 0.00 0.72 1.99 1.47 1.69 1.08 0.61 1.99 1.39 0.58 0.00 0.90 2.66 1.08 0.49 1.64 1.32 1.53 1.48 0.00 0.58 0.00 0.53 0.00 0.00 0.60 K alternative_acceptor CG5746 chr3R - chr3R_20173013_20173126 chr3R_20173022_20173126 chr3R_20173127_20173316;chr3R_20172803_20173012 100.00 100.00 100.00 100.00 100.00 95.35 100.00 100.00 98.77 97.78 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.72 98.80 98.46 100.00 100.00 100.00 96.88 98.39 100.00 100.00 97.30 98.82 98.00 100.00 100.00 99.22 98.41 98.78 100.00 100.00 98.77 95.65 100.00 100.00 97.92 100.00 100.00 98.53 100.00 98.21 96.55 98.00 100.00 100.00 100.00 95.45 100.00 K intron_retention RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522912_523360 chrX_522911_522912;chrX_523360_523361 chrX_522849_522911;chrX_523361_523436 7.23 8.21 5.19 8.40 8.59 7.23 23.28 8.71 9.80 6.45 7.62 7.18 11.05 8.45 5.78 5.57 9.02 7.03 5.51 7.58 5.66 17.57 5.61 7.53 16.80 16.00 8.20 11.81 3.37 5.81 4.32 8.46 2.52 6.92 8.45 4.85 5.77 6.95 8.76 6.65 7.95 10.03 8.11 3.91 3.72 6.34 5.88 3.76 9.01 7.73 7.26 7.66 5.54 5.53 4.52 7.66 6.31 3.33 K intron_retention SH3PX1 chr3L - chr3L_9705253_9706032 chr3L_9705252_9705253;chr3L_9706032_9706033 chr3L_9704600_9705252;chr3L_9706033_9707039 0.00 0.00 0.00 0.43 0.00 0.67 0.46 0.00 0.31 0.00 0.00 0.78 0.00 1.48 0.00 0.56 0.00 0.00 0.00 0.00 0.00 2.42 0.00 0.00 0.00 0.00 0.00 4.08 2.72 0.00 0.00 0.79 1.08 0.45 0.00 0.00 0.00 0.00 0.40 0.00 1.52 0.67 0.00 1.72 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.75 1.62 0.96 K jcn_only_AD Myb,RI_chrX_15752571_15753225 chrX - chrX_15751579_15751673;chrX_15751579_15751682;chrX_15751579_15751709 chrX_15751579_15751749 chrX_15749823_15751578;chrX_15751750_15751876 3.95 3.85 3.17 4.48 5.66 2.17 4.48 5.94 6.54 13.33 2.56 3.79 1.67 2.74 1.52 2.65 2.63 4.44 3.64 5.74 4.17 3.85 3.45 7.69 3.45 6.82 2.56 14.29 6.06 1.79 3.41 4.08 4.23 2.80 2.27 4.35 5.71 2.78 2.56 12.99 5.56 6.52 4.26 6.45 0.00 2.15 5.41 4.76 5.76 NA 2.78 7.89 2.78 0.00 4.05 0.00 6.90 3.48 K intron_retention Top1 chrX + chrX_15221410_15221482 chrX_15221409_15221410;chrX_15221482_15221483 chrX_15220378_15221409;chrX_15221483_15222062 100.00 100.00 100.00 97.83 100.00 100.00 100.00 98.55 100.00 92.86 100.00 95.35 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 97.67 100.00 100.00 95.00 100.00 100.00 96.88 96.43 97.30 96.15 100.00 100.00 100.00 100.00 100.00 96.00 96.49 96.43 100.00 100.00 100.00 100.00 97.67 100.00 96.43 100.00 97.96 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 K alternative_donor unc-104,I_chr2R_12643956_12644069,I_chr2R_12643956_12644305,RI_chr2R_12650846_12659758 chr2R - chr2R_12643956_12644069 chr2R_12643956_12644060 chr2R_12643856_12643955;chr2R_12644070_12644158 53.85 NA 53.85 47.37 NA 60.00 66.67 35.71 61.90 NA 41.67 58.82 NA 87.50 66.67 54.55 NA 45.45 66.67 47.37 NA 52.00 47.06 46.15 45.45 54.55 80.00 NA NA NA 35.71 NA NA 41.67 53.85 41.67 75.00 NA 35.00 85.71 NA 68.42 NA NA NA NA 63.64 NA 52.63 50.00 68.75 NA NA NA 50.00 NA NA NA K intron_retention CG1943,I_chr3R_2900855_2902611,I_chr3R_2901072_2902611,I_chr3R_2901508_2902611,I_chr3R_2902064_2902611 chr3R + chr3R_2902559_2902611 chr3R_2902558_2902559;chr3R_2902611_2902612 chr3R_2902529_2902558;chr3R_2902612_2902711 82.14 NA NA 100.00 90.00 NA 72.73 93.33 78.95 66.67 NA 84.21 NA 81.82 84.21 92.86 91.67 88.89 66.67 82.14 70.00 67.50 76.92 95.00 66.67 90.91 88.24 94.12 90.91 53.33 93.75 66.67 81.48 93.33 NA 91.67 77.78 66.67 57.14 83.33 94.74 80.00 NA NA 85.19 75.00 73.33 82.76 72.22 86.67 91.67 70.00 83.33 76.47 75.00 73.91 60.87 87.50 K intron_retention sec31,I_chr2R_4783150_4783708 chr2R + chr2R_4783150_4783455 chr2R_4783149_4783150;chr2R_4783455_4783456 chr2R_4783050_4783149;chr2R_4783456_4783558 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.91 1.32 2.17 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5869,RI_chr2L_16302612_16302752 chr2L - chr2L_16302612_16302770 chr2L_16302611_16302612;chr2L_16302770_16302771 chr2L_16302518_16302611;chr2L_16302771_16302852 0.00 3.61 0.71 1.54 0.00 1.12 1.37 1.19 1.65 0.00 0.00 0.46 0.00 0.00 0.85 1.38 0.00 0.00 0.00 0.75 0.00 0.00 3.45 0.00 0.00 1.63 1.28 0.00 5.56 0.00 0.00 0.00 1.82 1.28 0.00 1.35 0.00 0.00 0.00 0.00 0.00 1.97 1.75 1.19 3.12 0.72 0.00 0.00 0.79 0.00 1.80 0.00 0.00 2.02 1.42 0.00 0.00 0.00 K intron_retention dom,I_chr2R_17217595_17218598,I_chr2R_17228865_17228924 chr2R + chr2R_17228582_17228924 chr2R_17228581_17228582;chr2R_17228924_17228925 chr2R_17228199_17228581;chr2R_17228925_17229024 88.89 86.76 95.00 94.87 88.57 97.14 85.71 94.37 95.60 97.50 88.89 93.94 94.44 95.35 95.92 85.33 95.45 95.35 94.34 88.11 96.30 86.96 83.72 82.61 91.84 97.06 91.78 79.69 84.21 87.32 92.86 85.71 92.86 89.53 83.72 85.51 84.00 79.59 77.66 86.75 88.57 92.31 97.56 91.67 88.89 76.74 70.93 90.32 89.41 76.83 82.56 91.67 76.19 84.34 92.73 73.42 70.83 83.00 K jcn_only_AA CG30187,F_chr2R_18804786_18805198,F_chr2R_18805721_18805778,I_chr2R_18820842_18820922 chr2R - chr2R_18805073_18805156 chr2R_18805106_18805156 chr2R_18805157_18805720;chr2R_18805057_18805072 100.00 100.00 100.00 100.00 100.00 98.25 98.28 99.19 98.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 98.02 100.00 100.00 98.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.63 100.00 100.00 100.00 100.00 100.00 98.82 100.00 100.00 K alternative_acceptor Galpha49B,I_chr2R_8501587_8501648,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500357_8501759;chr2R_8500357_8501071 chr2R_8500357_8501648 chr2R_8500333_8500356;chr2R_8501760_8501850 12.50 7.14 12.50 15.38 0.00 20.00 15.15 8.11 4.26 28.57 7.69 7.41 0.00 0.00 13.33 8.51 10.53 16.67 21.74 8.33 0.00 18.18 0.00 13.33 18.18 11.11 13.33 16.67 25.00 11.11 0.00 33.33 20.00 5.56 13.33 7.69 25.00 14.29 22.22 12.00 22.22 6.45 10.53 14.29 33.33 12.50 20.00 18.18 12.50 16.67 5.56 0.00 0.00 0.00 5.88 0.00 33.33 18.18 K jcn_only_AA tlk chrX + chrX_3671394_3675687 chrX_3671394_3674540 chrX_3671379_3671393 0.00 NA NA 4.17 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG8709,I_chr2R_4027128_4027182,I_chr2R_4027682_4027747,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4028119_4028185 chr2R_4028122_4028185 chr2R_4028186_4028252;chr2R_4028019_4028118 48.42 49.61 47.75 54.74 50.89 43.69 41.10 50.35 50.26 44.05 40.98 49.75 54.22 55.81 48.51 50.00 45.12 49.47 47.37 48.42 50.00 49.52 49.45 44.24 37.89 41.94 47.62 40.78 48.00 46.05 47.69 52.54 46.36 48.67 43.00 50.81 46.53 50.72 46.79 44.57 47.52 50.00 48.84 47.69 37.50 46.75 46.83 51.41 52.76 54.35 40.22 59.04 48.28 49.54 51.63 48.00 51.35 51.15 K intron_retention CG10433 chr2R - chr2R_17493866_17493972 chr2R_17493865_17493866;chr2R_17493972_17493973 chr2R_17493797_17493865;chr2R_17493973_17494122 50.00 63.64 47.37 83.33 NA 60.00 57.14 56.25 47.83 NA 75.00 50.00 40.00 66.67 69.23 65.00 54.55 40.00 76.00 56.52 66.67 44.87 66.67 52.63 55.00 53.85 57.58 67.81 64.94 43.75 58.33 26.32 28.57 58.82 43.75 37.14 44.44 43.48 42.86 42.59 32.79 50.00 NA 44.74 32.65 33.33 34.62 39.47 53.85 31.67 56.52 47.06 46.15 27.27 50.00 45.00 55.56 33.33 K cassette toc chr2L - chr2L_3081269_3097921 chr2L_3081269_3094216;chr2L_3094376_3097921 chr2L_3094217_3094375 chr2L_3081242_3081268;chr2L_3097922_3098065 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 80.00 NA 100.00 90.91 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K cassette cora,I_chr2R_15125277_15130573,I_chr2R_15125940_15130208,I_chr2R_15129291_15129988 chr2R + chr2R_15125940_15129678;chr2R_15125940_15130208 chr2R_15125940_15128720;chr2R_15129291_15130208,chr2R_15129291_15129678 chr2R_15128721_15129290 chr2R_15125887_15125939;chr2R_15130209_15130308 100.00 100.00 100.00 99.85 100.00 100.00 99.80 100.00 99.91 99.74 100.00 100.00 100.00 100.00 100.00 99.76 100.00 100.00 100.00 100.00 99.79 99.94 100.00 99.88 99.82 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.93 100.00 100.00 99.86 100.00 100.00 100.00 100.00 99.86 99.91 100.00 100.00 99.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention alphaTub84B,EI_chr3R_2912813_2912955 chr3R + chr3R_2913175_2913240 chr3R_2913174_2913175;chr3R_2913240_2913241 chr3R_2912956_2913174;chr3R_2913241_2914567 100.00 100.00 100.00 100.00 100.00 100.00 99.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N jcn_only_AA CkIIbeta,I_chrX_11686847_11687475,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11687552_11687884 chrX_11687552_11687830 chrX_11687476_11687551;chrX_11687885_11687933 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 76.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor jigr1,I_chr3R_21474835_21474882 chr3R + chr3R_21472971_21473220 chr3R_21472971_21473058 chr3R_21472941_21472970;chr3R_21473221_21473313 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 NA 100.00 K intron_retention msps,I_chr3R_11877071_11877796 chr3R + chr3R_11882514_11883273 chr3R_11882513_11882514;chr3R_11883273_11883274 chr3R_11882014_11882513;chr3R_11883274_11883487 0.68 0.00 0.00 0.00 0.00 0.00 0.00 1.31 1.57 0.00 0.00 0.88 1.23 1.80 2.61 3.11 2.15 0.00 0.00 1.95 0.00 0.00 2.70 0.68 0.00 0.00 0.67 1.30 1.11 1.96 2.65 4.17 1.83 2.11 1.83 1.41 2.24 0.95 0.00 1.30 0.00 0.00 0.00 2.11 0.00 0.00 1.03 1.96 2.36 0.00 2.53 0.00 0.00 0.00 0.00 1.09 0.00 0.00 K intron_retention CG11880,I_chr3R_24949827_24951052,CE_chr3R_24962426_24962797 chr3R + chr3R_24949212_24949522 chr3R_24949211_24949212;chr3R_24949522_24949523 chr3R_24949204_24949211;chr3R_24949523_24949826 0.00 NA 0.00 26.09 NA NA 8.33 8.33 0.00 NA NA 5.88 0.00 NA NA 8.70 NA NA NA 13.64 0.00 NA NA NA NA 11.11 6.25 NA NA NA 0.00 NA NA 9.09 NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA N intron_retention CG8531,RI_chr2R_10144869_10144912 chr2R + chr2R_10145070_10145276 chr2R_10145069_10145070;chr2R_10145276_10145277 chr2R_10144926_10145069;chr2R_10145277_10145393 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 89.32 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 90.32 92.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Tango5,noncoding_22970,I_chrX_10659836_10661185 chrX - chrX_10656468_10658202;chrX_10656468_10658117 chrX_10656468_10658389 chrX_10656442_10656467;chrX_10658390_10658400 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG32343,I_chr3L_326540_326703,RI_chr3L_326725_326866 chr3L - chr3L_326540_326866 chr3L_326540_326703 chr3L_326440_326539;chr3L_326867_326966 2.20 2.17 0.00 1.47 4.00 6.06 0.00 2.63 2.50 0.00 3.85 3.23 11.54 2.56 0.00 2.13 0.00 0.00 0.00 1.85 2.44 1.96 0.00 6.06 NA 0.00 15.62 NA 5.41 0.00 0.00 3.45 1.54 0.00 4.35 6.67 0.00 0.00 2.94 6.15 5.13 4.76 4.35 6.25 2.22 7.69 0.00 5.45 1.59 3.57 0.00 4.76 NA 0.00 2.00 0.00 5.13 0.00 K alternative_donor Ubc-E2H,I_chrX_7984181_7984559,I_chrX_7984181_7984896,I_chrX_7984181_7987930,I_chrX_7984673_7985993 chrX - chrX_7984181_7985993 chrX_7984181_7985957 chrX_7984081_7984180;chrX_7985994_7986093 36.36 NA NA 50.00 NA NA NA 17.65 NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Myo61F chr3L + chr3L_1329162_1329223 chr3L_1329161_1329162;chr3L_1329223_1329224 chr3L_1326976_1329161;chr3L_1329224_1329320 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.50 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.44 0.88 2.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.17 0.00 K intron_retention CG16936,RI_chr2R_20655101_20655166,I_chr2R_20660319_20660496 chr2R - chr2R_20655101_20655161 chr2R_20655100_20655101;chr2R_20655161_20655162 chr2R_20655001_20655100;chr2R_20655162_20655665 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 K intron_retention EF_chr2R_8548702_8595112,nemy chr2R - chr2R_8560845_8563629 chr2R_8560844_8560845;chr2R_8563629_8563630 chr2R_8560605_8560844;chr2R_8563630_8563736 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.82 2.21 0.00 0.00 0.00 1.08 2.40 1.92 0.00 0.00 0.00 0.00 3.96 1.69 0.00 1.64 0.00 0.83 3.37 0.00 1.48 0.00 0.95 0.00 0.00 0.00 3.23 1.56 0.00 0.66 1.47 0.00 0.00 0.00 1.67 0.00 1.92 K jcn_only_AD CG32000,RI_chr4_153025_153811,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_153025_153811;chr4_152914_153811 chr4_152998_153811 chr4_153812_153855;chr4_152891_152913 5.08 NA 0.00 6.06 NA NA 1.89 2.04 5.08 NA NA 14.00 NA 6.90 NA 3.85 NA NA 7.41 4.35 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 5.66 NA NA NA NA NA 13.64 NA 0.00 NA NA NA NA NA 10.81 1.41 NA NA NA NA NA NA NA NA 7.14 K alternative_donor CG4239,I_chrX_16279725_16280317 chrX + chrX_16279372_16281003;chrX_16279725_16281003 chrX_16279721_16281003 chrX_16281004_16281322;chrX_16279353_16279371 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Got2,I_chr2L_1985901_1985945 chr2L - chr2L_1985884_1985945 chr2L_1985901_1985945 chr2L_1985946_1986045;chr2L_1985801_1985883 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.52 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 K intron_retention CG15027 chrX - chrX_14979754_14979820 chrX_14979753_14979754;chrX_14979820_14979821 chrX_14979084_14979753;chrX_14979821_14979930 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 NA NA NA NA 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA 0.00 13.33 NA NA 0.00 NA NA NA 0.00 NA 0.00 NA 10.53 0.00 K intron_retention I_chr3L_22843473_22858870,CG33170,RI_chr3L_22859073_22860499,I_chr3L_22859135_22860499 chr3L + chr3L_22858925_22858977 chr3L_22858924_22858925;chr3L_22858977_22858978 chr3L_22858871_22858924;chr3L_22858978_22859060 0.00 0.00 0.00 1.73 0.00 1.43 0.00 0.58 0.75 0.00 0.00 1.19 1.82 0.00 0.00 2.45 0.00 0.00 0.00 0.62 0.00 0.00 4.35 0.00 5.56 0.00 2.78 4.65 0.00 0.00 0.00 0.00 0.00 0.71 0.00 2.38 5.56 0.00 0.00 1.48 0.44 2.19 2.78 0.76 0.00 0.40 0.00 0.42 2.44 0.00 3.70 0.00 0.00 1.40 1.57 0.00 0.69 0.52 K alternative_acceptor kat80,I_chrX_16162233_16162306,I_chrX_16168725_16169287 chrX - chrX_16162236_16162306 chrX_16162239_16162306 chrX_16162307_16162406;chrX_16162105_16162235 28.57 35.29 26.32 27.12 24.00 35.00 24.53 32.76 25.32 33.33 30.30 27.08 26.67 16.28 20.45 20.41 27.59 25.93 24.24 27.54 31.82 30.00 24.39 20.83 24.00 39.29 17.31 36.84 24.00 29.03 25.00 26.09 29.17 39.47 31.82 37.50 25.00 31.71 29.69 31.82 33.33 31.37 29.17 30.00 29.03 28.57 31.03 34.38 33.33 24.49 23.26 28.00 30.77 22.58 28.95 23.68 32.35 27.27 K intron_retention Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2364889 chr2L_2361585_2361586;chr2L_2364889_2364890 chr2L_2361486_2361585;chr2L_2364890_2364894 0.00 0.00 0.00 2.33 1.41 0.00 1.68 1.41 2.48 0.00 0.00 1.61 1.52 0.00 1.25 0.83 0.00 0.00 2.25 2.11 0.00 5.88 1.54 0.00 0.00 0.00 5.26 0.00 3.85 0.00 0.00 0.00 0.00 1.50 3.23 0.00 1.20 0.00 2.53 4.88 0.00 1.45 0.00 0.00 0.00 4.17 0.00 0.00 1.48 0.00 2.44 1.85 0.00 0.00 0.00 4.44 2.78 0.00 K jcn_only_AA tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563098_563194 chr3R_563101_563194 chr3R_563195_563460;chr3R_563036_563097 98.24 99.22 98.32 97.73 98.95 99.17 97.69 98.73 98.20 100.00 93.90 98.64 99.25 99.21 95.31 96.03 98.85 97.62 98.39 98.24 98.96 96.68 97.60 97.50 98.86 97.37 95.45 96.12 98.32 96.21 98.85 98.20 100.00 98.14 99.12 99.15 96.72 100.00 97.94 99.04 97.06 97.66 99.07 98.51 97.10 97.66 97.41 98.27 97.96 100.00 97.91 98.00 97.53 98.65 99.42 97.17 98.56 98.98 K alternative_acceptor psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6501632_6502058;chr2R_6501632_6502037 chr2R_6501632_6502052 chr2R_6501448_6501631;chr2R_6502059_6503753 7.14 3.92 8.82 12.20 7.50 3.85 16.13 5.56 12.64 12.50 4.17 8.22 7.69 6.67 11.63 3.85 7.41 3.45 4.35 10.84 4.00 7.59 7.35 7.84 8.33 11.11 5.71 6.45 2.50 4.92 7.69 4.55 12.28 4.26 6.45 8.16 6.36 7.81 3.85 7.14 9.09 8.97 8.00 4.55 12.82 2.86 0.00 1.96 6.78 6.82 8.20 3.03 4.17 7.69 5.88 5.71 12.12 10.81 K alternative_donor BtbVII,I_chr3L_3150858_3150927,I_chr3L_3151185_3151263 chr3L + chr3L_3149161_3149627;chr3L_3149134_3149627 chr3L_3149157_3149627 chr3L_3149628_3150153;chr3L_3149092_3149133 20.84 NA NA 11.11 NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA 16.67 NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor Aats-ala chr2L - chr2L_8381453_8381679 chr2L_8381549_8381679 chr2L_8381680_8381706;chr2L_8380448_8381452 0.95 1.23 0.48 1.20 0.00 0.60 2.04 0.99 0.40 0.00 0.94 0.95 1.55 1.46 0.49 0.70 0.00 0.00 0.51 0.77 0.82 4.51 1.92 4.76 1.11 0.70 5.63 1.69 2.30 0.81 0.95 0.00 1.08 1.08 2.33 10.78 0.00 2.56 1.89 1.54 1.20 1.01 0.00 0.91 0.56 0.00 2.08 0.31 1.04 2.00 0.00 1.19 0.00 3.57 0.50 0.00 0.00 0.93 K intron_retention JhI-21,I_chr2L_12055360_12055714 chr2L - chr2L_12055360_12055714 chr2L_12055359_12055360;chr2L_12055714_12055715 chr2L_12055328_12055359;chr2L_12055715_12055814 29.41 NA 26.67 NA NA NA 12.90 22.22 25.00 NA NA 26.67 27.27 NA NA 22.73 NA 30.77 33.33 25.00 NA NA NA 46.15 NA NA 28.57 NA 61.54 NA NA NA NA NA NA 33.33 NA NA NA 30.77 NA 33.33 NA NA NA 6.25 NA NA 29.41 33.33 33.33 NA NA NA 31.25 NA NA NA K alternative_donor Ide,I_chr3L_20366301_20366354,I_chr3L_20368443_20368519 chr3L - chr3L_20366301_20366362 chr3L_20366301_20366354 chr3L_20366201_20366300;chr3L_20366363_20366454 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA K intron_retention Patr-1 chr3R + chr3R_12872517_12872572 chr3R_12872516_12872517;chr3R_12872572_12872573 chr3R_12872271_12872516;chr3R_12872573_12873444 0.00 0.00 0.00 4.00 0.00 0.00 0.00 2.35 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG7029,CG7023 chr3R + chr3R_18577089_18592332 chr3R_18577088_18577089;chr3R_18592332_18592333 chr3R_18577074_18577088;chr3R_18592333_18592448 0.00 NA 0.00 2.22 NA 0.00 5.88 0.00 3.64 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 4.76 NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 K intron_retention rump,RI_chr3R_5335093_5335157,I_chr3R_5338175_5338299 chr3R - chr3R_5335093_5335157 chr3R_5335092_5335093;chr3R_5335157_5335158 chr3R_5335085_5335092;chr3R_5335158_5335257 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 NA NA 90.00 NA NA NA NA NA NA NA 100.00 NA 68.75 NA NA NA NA 100.00 NA NA NA NA NA 91.67 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 86.67 NA NA 88.89 NA NA NA NA NA NA 100.00 K alternative_donor lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22817658_22817713;chr2L_22817653_22817713 chr2L_22817556_22817713 chr2L_22817714_22817839;chr2L_22817553_22817555 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 4.00 0.00 0.00 NA 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 8.33 K jcn_only_AD osa,R_chr3R_13525411_13533475,I_chr3R_13525426_13525859 chr3R - chr3R_13525426_13525849;chr3R_13525426_13533492 chr3R_13525426_13525859 chr3R_13525326_13525425;chr3R_13533493_13533575 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.87 3.23 0.00 2.35 0.00 0.51 0.00 0.29 0.36 0.44 0.63 0.00 0.71 0.00 0.61 0.00 1.12 0.00 0.39 0.73 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.90 1.20 0.00 0.55 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 K jcn_only_AA mip120,I_chr2R_9394299_9394351,RI_chr2R_9394299_9395019,EfTuM chr2R + chr2R_9394299_9395019;chr2R_9394299_9394351 chr2R_9394299_9397293 chr2R_9394199_9394298 72.00 65.62 76.67 92.00 NA 77.27 NA 96.67 85.37 NA NA 82.50 NA 77.27 70.83 63.89 NA 62.50 77.27 78.46 72.00 NA 80.95 62.16 47.83 NA NA NA NA NA 40.00 NA 46.15 75.76 NA 30.43 39.58 72.00 64.58 46.94 NA 80.00 NA 81.82 19.05 50.00 NA 43.33 73.53 45.00 76.32 NA NA NA 79.17 65.00 NA NA K intron_retention CG8929 chr2R + chr2R_16215640_16215831 chr2R_16215639_16215640;chr2R_16215831_16215832 chr2R_16215372_16215639;chr2R_16215832_16216526 2.27 0.00 0.00 0.00 0.00 0.00 7.41 0.00 2.27 0.00 4.00 13.51 21.43 5.56 6.67 11.11 0.00 0.00 0.00 6.90 0.00 10.00 3.45 3.51 0.00 0.00 7.32 5.88 14.29 0.00 0.00 0.00 12.00 8.00 0.00 8.57 3.39 4.17 0.00 1.89 23.53 7.55 3.85 3.23 0.00 0.00 3.45 0.00 4.88 5.13 9.76 0.00 0.00 0.00 3.70 0.00 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2395659 chrX_2388671_2392054;chrX_2392149_2392515;chrX_2392665_2393243;chrX_2393712_2394269;chrX_2394396_2395151;chrX_2395275_2395659 chrX_2392055_2392148;chrX_2392516_2392664;chrX_2393244_2393711;chrX_2394270_2394395;chrX_2395152_2395274 chrX_2388641_2388670;chrX_2395660_2395759 25.00 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention shi,RI_chrX_15786633_15786860,RE_chrX_15793108_15795563 chrX + chrX_15786474_15786860 chrX_15786473_15786474;chrX_15786860_15786861 chrX_15786464_15786473;chrX_15786861_15786960 21.06 30.00 35.29 32.26 NA 20.00 12.12 29.41 19.30 21.43 12.50 30.00 10.71 21.88 21.74 27.45 26.67 NA 20.69 14.29 14.29 NA 15.15 4.76 22.22 23.08 6.45 NA NA 8.33 22.86 NA 41.67 27.45 18.18 29.41 7.14 14.29 NA 15.62 20.00 37.14 30.00 18.75 NA 23.53 NA 20.00 28.89 NA 6.25 14.29 NA NA 22.73 NA NA NA K intron_retention Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_139128_139180 chr4_139127_139128;chr4_139180_139181 chr4_137446_139127;chr4_139181_139405 2.50 3.12 8.11 5.19 4.62 0.00 2.34 4.83 4.23 3.45 0.00 3.75 5.63 2.60 8.89 3.39 2.38 3.28 4.95 1.87 0.00 1.72 7.69 5.06 0.00 0.00 12.86 12.00 0.00 4.76 4.69 0.00 8.33 6.71 2.17 12.12 2.41 0.00 0.00 2.63 0.00 5.44 5.80 1.32 NA 0.00 0.00 2.70 3.51 0.00 0.00 0.00 0.00 0.00 2.15 0.00 0.00 0.00 K jcn_only_AA thoc5 chr2R + chr2R_19841762_19841821 chr2R_19841762_19841818 chr2R_19841616_19841761;chr2R_19841822_19842616 0.00 1.35 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 8.11 0.95 2.63 0.00 0.00 1.33 0.00 2.56 0.00 0.00 0.00 1.47 0.00 0.00 0.00 1.72 0.00 0.00 0.94 1.20 0.00 0.00 0.00 1.43 0.00 0.00 1.59 0.00 0.78 0.00 0.00 1.79 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 K mutually_exclusive Pkn,EI_chr2R_5143544_5143611,CI_chr2R_5143544_5146344,I_chr2R_5171635_5172166 chr2R - chr2R_5143215_5144914,chr2R_5145185_5146344 chr2R_5143215_5143333,chr2R_5143544_5146344 chr2R_5144915_5145184 chr2R_5143334_5143543 chr2R_5143018_5143214;chr2R_5146345_5146444 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 0.00 14.29 0.00 NA NA NA 0.00 25.00 0.00 NA NA 0.00 NA NA NA 12.50 NA 0.00 50.00 NA 0.00 NA 25.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 K alternative_donor CG31063 chr3R - chr3R_23053664_23053789 chr3R_23053664_23053781 chr3R_23053160_23053663;chr3R_23053790_23054194 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.32 0.00 0.00 0.00 0.24 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3R_8529216_8529360,CG12279 chr3R + chr3R_8531004_8531065 chr3R_8531003_8531004;chr3R_8531065_8531066 chr3R_8530821_8531003;chr3R_8531066_8531225 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 1.82 0.00 2.34 0.00 0.63 0.62 1.12 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor ras chrX + chrX_10639998_10640108 chrX_10640017_10640108 chrX_10640109_10640259;chrX_10639995_10639997 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 95.24 100.00 96.55 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 94.29 95.65 96.77 100.00 96.97 100.00 96.15 96.43 98.33 100.00 100.00 96.88 100.00 100.00 100.00 98.57 97.50 100.00 100.00 98.21 95.12 100.00 100.00 98.11 98.55 100.00 98.18 97.22 97.73 100.00 100.00 96.97 97.67 100.00 K alternative_donor vir-1,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,noncoding_2764,I_chr2L_12421830_12423260 chr2L - chr2L_12421830_12423322;chr2L_12421830_12423260;chr2L_12421830_12423333 chr2L_12421830_12423278 chr2L_12421816_12421829;chr2L_12423334_12423360 0.72 1.50 1.67 0.54 0.00 1.47 0.58 1.17 0.82 0.00 0.93 0.82 0.74 0.98 1.62 0.41 1.09 1.28 1.21 0.52 2.68 0.53 0.93 0.43 1.52 1.46 0.65 0.00 1.16 0.72 0.85 0.00 1.32 1.75 1.32 0.68 0.00 0.63 0.00 0.00 0.00 0.55 1.19 0.30 1.47 1.24 0.37 0.00 0.85 0.91 0.40 0.36 0.53 0.65 0.95 0.71 0.26 0.48 K alternative_acceptor CG12340,I_chr2R_6688558_6688738,I_chr2R_6688672_6688738 chr2R - chr2R_6688672_6688738 chr2R_6688677_6688738 chr2R_6688739_6688838;chr2R_6688572_6688671 94.74 90.91 100.00 94.12 100.00 100.00 90.91 100.00 94.74 NA NA 100.00 NA 100.00 92.86 90.91 NA 90.91 91.67 95.65 91.67 100.00 100.00 94.12 83.33 90.91 100.00 100.00 90.00 93.33 NA 94.74 95.24 90.00 91.67 100.00 100.00 90.00 100.00 97.22 100.00 100.00 87.50 100.00 89.29 92.86 100.00 94.59 94.44 95.24 95.00 87.50 90.91 100.00 87.50 100.00 100.00 92.50 K alternative_acceptor PNGase,I_chr2R_1906759_1906817,I_chr2R_1906899_1906977 chr2R + chr2R_1905861_1905922 chr2R_1905861_1905911 chr2R_1905769_1905860;chr2R_1905923_1906012 2.27 4.55 1.23 3.88 3.51 1.56 1.09 2.99 1.33 3.45 0.00 1.65 1.49 0.00 1.23 0.98 0.00 0.00 2.70 2.16 1.67 0.96 4.11 3.96 2.33 1.47 2.60 2.22 5.26 2.38 8.43 3.70 4.11 1.68 2.56 2.27 2.04 3.57 1.14 1.83 3.45 1.85 0.00 2.53 5.13 4.23 1.75 4.55 5.56 3.23 2.33 1.64 4.65 0.00 3.03 1.49 1.03 3.39 K intron_retention DhpD chr3R - chr3R_54357_54449 chr3R_54356_54357;chr3R_54449_54450 chr3R_54202_54356;chr3R_54450_54710 4.05 1.33 0.00 4.60 6.56 3.57 7.59 4.60 4.23 4.44 3.12 3.49 2.50 7.69 3.17 4.35 8.77 6.06 0.00 3.55 0.00 6.67 9.43 3.37 0.00 1.85 4.26 5.45 0.00 1.37 5.56 6.52 7.25 2.38 4.65 3.12 2.72 4.30 3.38 3.03 2.78 4.41 0.00 6.85 1.37 2.78 2.41 6.12 4.65 1.54 7.61 0.00 1.56 6.45 4.05 5.81 5.45 7.14 K jcn_only_AA tou,I_chr2R_7468394_7468453,RI_chr2R_7474644_7475275,I_chr2R_7479681_7491857,I_chr2R_7504956_7505020 chr2R - chr2R_7468368_7468453 chr2R_7468394_7468453 chr2R_7468454_7468553;chr2R_7468294_7468367 4.29 3.33 5.41 0.00 7.14 9.09 7.14 13.16 8.22 1.85 0.00 4.29 4.76 0.00 2.27 3.23 0.00 0.00 9.38 4.29 0.00 4.12 3.08 1.61 3.39 2.44 7.58 1.30 12.86 0.90 0.00 5.77 2.83 6.35 4.35 4.95 2.40 1.30 2.88 2.52 8.96 6.90 6.67 6.06 5.22 3.45 5.00 7.79 2.67 1.27 9.89 6.52 5.41 8.06 2.56 5.13 6.17 3.41 K cassette Pde11,I_chr2L_18539674_18540627 chr2L - chr2L_18543716_18562882 chr2L_18543716_18546524;chr2L_18547045_18562882 chr2L_18546525_18547044 chr2L_18543262_18543715;chr2L_18562883_18562901 94.44 100.00 87.50 100.00 100.00 100.00 100.00 100.00 96.43 100.00 87.50 94.44 91.67 90.91 100.00 100.00 100.00 72.73 100.00 92.00 100.00 92.86 94.44 86.67 92.31 100.00 93.33 92.86 88.89 92.86 90.00 100.00 85.71 100.00 100.00 92.86 100.00 88.89 92.86 89.47 100.00 95.24 88.89 88.24 100.00 88.89 100.00 94.12 95.00 85.71 100.00 88.89 80.00 75.00 100.00 100.00 100.00 100.00 K cassette Hsf,I_chr2R_14018415_14018474 chr2R - chr2R_14018551_14018786 chr2R_14018551_14018640;chr2R_14018695_14018786 chr2R_14018641_14018694 chr2R_14018475_14018550;chr2R_14018787_14018892 2.70 3.92 2.22 2.04 2.70 2.38 4.48 1.08 1.94 5.00 2.86 4.84 2.50 4.44 4.44 3.08 2.04 0.00 2.13 0.88 0.00 3.03 6.12 5.71 4.55 1.92 4.76 2.44 0.00 2.27 1.89 5.71 3.95 1.06 2.78 3.70 5.00 0.00 1.92 2.38 4.17 1.09 0.00 2.90 1.23 6.25 4.55 5.56 2.44 2.30 3.92 8.00 3.45 4.76 1.82 2.70 1.89 4.49 K intron_retention Rip11,E_chrX_18532733_18533695,RI_chrX_18530353_18530870,RI_chrX_18530742_18530870,RI_chrX_18544139_18544185 chrX - chrX_18530353_18530870 chrX_18530352_18530353;chrX_18530870_18530871 chrX_18530253_18530352;chrX_18530871_18530906 94.85 96.00 98.68 94.29 97.56 89.47 93.52 98.39 95.43 94.29 98.04 91.40 93.33 98.46 95.83 99.24 85.71 98.46 97.44 89.41 97.96 90.60 95.12 93.75 94.00 93.75 90.14 92.00 90.43 96.04 96.08 89.74 92.24 96.95 92.45 94.29 96.55 91.11 94.44 94.85 96.67 93.43 98.08 93.10 90.82 94.89 90.67 95.29 94.85 96.88 95.18 92.11 97.78 89.58 96.25 94.12 98.00 97.24 K cassette CG12946,noncoding_15730,I_chr3R_5599701_5600032,I_chr3R_5609682_5609889 chr3R - chr3R_5599358_5600041;chr3R_5599358_5600032 chr3R_5599358_5599459;chr3R_5599701_5600032,chr3R_5599701_5600041 chr3R_5599460_5599700 chr3R_5599286_5599357;chr3R_5600042_5600132 75.00 73.33 58.33 77.78 81.82 77.78 66.67 78.57 72.41 87.50 60.00 76.47 87.50 90.00 91.67 83.33 87.50 72.73 70.00 66.67 58.33 100.00 94.12 76.47 66.67 66.67 66.67 75.00 90.91 62.50 80.00 62.50 94.12 85.71 76.92 87.50 60.00 70.59 63.16 66.67 53.85 72.00 87.50 80.00 85.71 71.43 75.00 45.45 66.67 75.00 71.43 70.00 83.33 72.73 83.33 72.73 77.78 83.33 K alternative_donor plx,noncoding_14842 chr3R + chr3R_1511667_1512762 chr3R_1511993_1512762 chr3R_1512763_1512877;chr3R_1511624_1511666 88.89 91.67 83.33 90.91 80.00 69.23 85.71 88.89 85.71 81.82 100.00 88.89 100.00 84.62 94.12 75.00 87.50 90.91 90.91 74.07 90.00 100.00 100.00 100.00 84.62 78.57 94.12 100.00 90.91 81.25 100.00 100.00 89.47 73.91 85.71 87.50 100.00 86.67 100.00 86.36 100.00 85.19 71.43 100.00 83.33 87.50 62.50 94.74 84.00 83.33 89.47 76.92 100.00 100.00 93.75 71.43 85.71 100.00 K jcn_only_AA CG14401,RI_chr2L_20870192_20870512 chr2L + chr2L_20870761_20870837 chr2L_20870761_20870831 chr2L_20870700_20870760;chr2L_20870838_20870900 95.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.65 NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor Ucrh,CREFI_chr3LHet_606442_607073 chr3LHet + chr3LHet_606253_606349 chr3LHet_606275_606349 chr3LHet_606350_606441;chr3LHet_606239_606252 82.75 74.07 82.05 79.66 78.79 77.78 87.39 86.81 85.09 90.91 80.00 79.69 91.84 84.09 68.25 83.16 70.00 85.29 83.82 84.21 86.67 76.92 90.00 84.62 100.00 81.08 100.00 NA 92.86 NA 74.60 80.00 85.71 78.65 NA 77.78 91.67 81.82 94.44 94.44 88.00 81.32 79.17 85.71 72.00 85.71 92.86 75.00 80.61 79.17 75.00 82.35 NA NA 77.97 95.00 100.00 72.41 K alternative_donor CG12576,RI_chrX_21878289_21882347,I_chrX_21882735_21882809,I_chrX_21882735_21883407,I_chrX_21882735_21883467,I_chrX_21882735_21883620,I_chrX_21882735_21883714 chrX - chrX_21882735_21882809;chrX_21882735_21883714;chrX_21882735_21883467 chrX_21882735_21883750 chrX_21882635_21882734;chrX_21883751_21883814 98.00 96.83 98.00 96.33 100.00 97.83 93.06 98.46 97.55 97.44 98.31 94.68 96.67 96.77 98.31 96.70 98.46 100.00 97.22 97.69 100.00 97.87 98.80 100.00 97.14 98.04 94.34 94.44 98.67 97.30 96.88 97.96 98.37 98.17 100.00 98.21 98.51 97.62 100.00 97.62 98.00 98.02 98.04 98.81 100.00 97.62 98.31 99.19 96.03 94.87 98.46 97.83 100.00 96.88 97.22 100.00 97.87 99.23 K intron_retention Su(var)2-HP2 chr2R - chr2R_10504866_10504932 chr2R_10504865_10504866;chr2R_10504932_10504933 chr2R_10504551_10504865;chr2R_10504933_10505250 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 10.71 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K jcn_only_AA CG6701,RI_chr2R_9866395_9866446,RI_chr2R_9866896_9867532 chr2R - chr2R_9866395_9866446;chr2R_9865355_9866446 chr2R_9865335_9866446 chr2R_9866447_9866546;chr2R_9865150_9865334 0.00 0.69 0.00 0.36 0.00 0.00 0.32 0.59 0.00 1.06 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.68 0.00 0.00 0.00 1.01 0.00 0.66 0.00 0.00 0.70 2.33 0.00 0.65 0.35 1.10 0.00 0.56 0.81 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.76 0.00 0.00 0.00 0.44 1.75 0.00 0.00 K alternative_donor Mnf,RI_chr3L_11108913_11109028,F_chr3L_11109008_11109130 chr3L - chr3L_11108913_11109028 chr3L_11108913_11108989 chr3L_11108908_11108912;chr3L_11109029_11109128 100.00 96.55 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 94.74 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 96.55 100.00 96.15 100.00 93.10 96.88 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 96.30 100.00 96.67 100.00 K alternative_acceptor Upf2,I_chrX_7969268_7969358,I_chrX_7969312_7969358 chrX - chrX_7969312_7969358;chrX_7969268_7969358;chrX_7969303_7969358 chrX_7969293_7969358 chrX_7969359_7969458;chrX_7969212_7969267 11.11 25.00 16.67 7.14 10.00 11.11 6.67 22.22 13.33 16.67 NA 8.33 16.67 12.50 9.09 7.69 12.50 14.29 12.50 8.33 33.33 15.38 30.77 16.67 14.29 9.09 NA 16.67 14.29 11.11 9.09 NA 14.29 9.52 20.00 0.00 6.25 20.00 25.00 7.69 NA 10.00 10.00 11.11 0.00 NA NA 0.00 0.00 12.50 11.11 NA 0.00 NA 7.69 NA 20.00 0.00 K intron_retention mael chr3L + chr3L_22717525_22717583 chr3L_22717524_22717525;chr3L_22717583_22717584 chr3L_22717334_22717524;chr3L_22717584_22717785 100.00 100.00 96.55 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 96.15 96.67 100.00 94.12 95.00 96.30 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette Tl,I_chr3R_22632148_22652297 chr3R + chr3R_22625203_22663440 chr3R_22625203_22652297;chr3R_22652419_22663440 chr3R_22652298_22652418 chr3R_22625103_22625202;chr3R_22663441_22664678 100.00 100.00 100.00 100.00 100.00 100.00 98.84 100.00 100.00 100.00 100.00 98.89 100.00 100.00 100.00 100.00 98.15 97.67 98.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_150069_150307;chr4_150069_150180;chr4_150069_150378;chr4_150069_150295;chr4_150069_150205 chr4_150069_150353 chr4_149969_150068;chr4_150379_150379 21.11 NA 0.00 20.00 25.00 33.33 15.00 29.41 12.50 NA 33.33 20.00 0.00 0.00 20.00 9.09 28.57 25.00 20.00 22.22 NA NA NA NA NA 33.33 NA NA NA NA 42.86 NA NA 26.67 NA NA NA NA NA NA NA 33.33 0.00 NA NA NA NA NA 26.67 NA NA NA NA NA 16.67 NA NA NA K jcn_only_AD CG17600 chrX + chrX_21942714_21942775 chrX_21942723_21942775 chrX_21942776_21942904;chrX_21942596_21942713 0.00 NA 3.70 3.70 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 3.85 0.00 NA NA NA 1.39 NA 0.00 0.00 2.63 3.12 NA 0.00 0.00 5.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 NA 5.00 0.00 1.82 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 2.27 K alternative_donor slgA,I_chrX_21253735_21253820 chrX + chrX_21245768_21247146;chrX_21245487_21247146 chrX_21245849_21247146 chrX_21247147_21247693;chrX_21245405_21245486 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA frtz chr2L - chr2L_1714427_1715138;chr2L_1714406_1715138 chr2L_1714474_1715138 chr2L_1715139_1715811;chr2L_1714173_1714405 100.00 NA NA 87.50 NA NA 100.00 97.14 97.83 NA NA 97.56 NA NA NA 100.00 NA NA NA 98.04 NA 100.00 97.44 96.77 100.00 100.00 100.00 100.00 95.00 100.00 NA NA 100.00 NA 95.00 95.65 97.50 100.00 100.00 100.00 NA 100.00 NA 100.00 95.65 NA NA NA 100.00 100.00 97.44 96.43 NA NA 100.00 NA 95.45 NA K jcn_only_AD Mtch,RI_chr3L_184729_185366,I_chr3L_185367_185925 chr3L + chr3L_184682_184777;chr3L_184663_184777 chr3L_184670_184777 chr3L_184778_184854;chr3L_184654_184662 25.00 NA NA NA NA 23.81 NA NA 20.00 NA NA NA NA NA NA NA NA NA NA 32.00 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA 25.00 NA NA NA NA NA 16.67 NA 40.74 NA NA NA NA NA 13.64 21.74 NA NA NA NA NA 28.00 NA NA 25.00 K intron_retention CG12065,CE_chrX_8469528_8477573 chrX + chrX_8478957_8479842 chrX_8478956_8478957;chrX_8479842_8479843 chrX_8478925_8478956;chrX_8479843_8479951 88.89 NA NA NA NA NA 80.00 NA 83.33 NA NA 90.91 NA NA NA 77.78 NA 41.67 NA 56.25 NA 83.33 93.33 88.89 NA NA 87.50 NA 94.12 NA 77.78 NA 100.00 NA NA NA 88.89 88.89 69.23 92.31 NA NA NA NA 87.50 90.91 90.91 93.75 NA 90.00 NA NA NA NA NA NA NA 90.91 K jcn_only_AD Cdc42,I_chrX_19591186_19591967,I_chrX_19591567_19591967,I_chrX_19591671_19591967 chrX + chrX_19591186_19591967;chrX_19591567_19591967 chrX_19591259_19591967 chrX_19591968_19592067;chrX_19591086_19591185 99.59 99.73 99.08 99.57 98.75 99.31 99.24 99.34 99.36 99.56 100.00 99.29 99.35 99.60 99.56 99.68 99.48 99.45 99.77 99.50 99.87 99.87 99.65 99.66 99.38 99.65 99.66 99.86 99.20 99.24 99.30 99.73 99.77 99.48 100.00 99.81 99.55 99.59 99.41 99.69 99.71 99.53 99.38 99.79 99.11 99.85 99.32 99.43 99.64 99.70 99.75 99.68 99.62 99.77 99.42 99.45 99.79 100.00 K intron_retention zip,I_chr2R_20878796_20879147 chr2R - chr2R_20884825_20887561 chr2R_20884824_20884825;chr2R_20887561_20887562 chr2R_20884732_20884824;chr2R_20887562_20887683 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG10602 chr2L - chr2L_18857404_18857541;chr2L_18857404_18857511 chr2L_18857404_18857587 chr2L_18857177_18857403;chr2L_18857588_18857700 90.91 96.43 88.00 89.47 100.00 90.91 86.84 93.18 94.12 NA 91.30 93.18 69.23 96.77 81.48 95.35 93.33 90.91 96.88 92.31 92.31 90.91 92.86 96.15 90.48 90.91 92.86 100.00 79.17 90.91 89.29 85.71 73.68 88.37 76.47 82.35 96.77 100.00 96.30 87.18 89.47 90.00 89.47 92.31 88.89 90.48 88.89 85.71 94.44 95.24 90.91 93.94 94.74 NA 88.89 90.48 92.86 82.35 K intron_retention CG7816,RI_chr3R_25691122_25694436 chr3R - chr3R_25690073_25690134 chr3R_25690072_25690073;chr3R_25690134_25690135 chr3R_25689917_25690072;chr3R_25690135_25690548 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.52 0.45 1.23 0.00 0.92 0.00 2.97 1.27 0.00 0.00 0.00 0.00 1.00 0.00 0.61 2.73 1.10 0.00 0.00 3.29 3.30 0.00 2.38 0.00 0.00 0.00 0.00 0.00 1.47 0.83 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 2.28 0.00 0.00 0.00 0.71 0.00 0.00 1.53 1.06 0.81 K intron_retention Apc2 chr3R + chr3R_19990127_19990186 chr3R_19990126_19990127;chr3R_19990186_19990187 chr3R_19989730_19990126;chr3R_19990187_19990531 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 91.67 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 N cassette CG5604 chr2L - chr2L_10290491_10292209 chr2L_10290491_10291106;chr2L_10291144_10292209 chr2L_10291107_10291143 chr2L_10290351_10290490;chr2L_10292210_10292339 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 63.64 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 K jcn_only_AA myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_716066_716322;chr4_715043_716322;chr4_715964_716322 chr4_716153_716322 chr4_716323_716675 9.38 NA NA 0.00 NA NA 16.00 6.52 16.36 NA NA 9.38 NA 4.35 NA 9.76 9.52 NA NA 5.71 NA NA NA NA NA NA NA NA NA NA 9.52 NA NA 6.25 NA NA NA NA NA NA NA 11.54 NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA K intron_retention CG1667,RI_chr2R_5731409_5731653,I_chr2R_5732410_5732504 chr2R + chr2R_5732727_5732832 chr2R_5732726_5732727;chr2R_5732832_5732833 chr2R_5732505_5732726;chr2R_5732833_5732839 46.61 NA NA 52.63 NA NA 50.00 41.18 47.06 NA NA NA NA NA NA 37.14 NA NA NA 46.15 NA NA NA NA NA NA NA NA NA NA 33.33 60.00 NA 42.11 NA NA NA NA NA NA NA NA NA NA NA 57.14 NA NA 33.33 NA NA NA NA NA NA NA NA 66.67 K intron_retention tai,I_chr2L_9191814_9206231 chr2L + chr2L_9245713_9245776 chr2L_9245712_9245713;chr2L_9245776_9245777 chr2L_9245386_9245712;chr2L_9245777_9246450 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.40 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor RI_chr3R_4807638_4807736,I_chr3R_4807909_4807960,CG11967 chr3R + chr3R_4807638_4807736 chr3R_4807638_4807701 chr3R_4807584_4807637;chr3R_4807737_4807747 100.00 NA NA 100.00 NA NA NA 100.00 88.89 NA NA 100.00 NA NA NA 100.00 NA NA NA 90.91 NA 100.00 NA 87.50 NA NA NA NA NA NA NA NA 100.00 87.50 NA NA NA NA 100.00 88.89 NA 100.00 NA NA NA 87.50 100.00 100.00 90.00 87.50 100.00 NA NA NA 100.00 NA 87.50 100.00 K jcn_only_AD CG1718 chrX - chrX_21163958_21164390;chrX_21163958_21164182 chrX_21163958_21164368 chrX_21163741_21163957;chrX_21164391_21164557 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.45 NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA 96.43 NA K intron_retention Hsc70Cb chr3L + chr3L_14030237_14030577 chr3L_14030236_14030237;chr3L_14030577_14030578 chr3L_14030227_14030236;chr3L_14030578_14030850 14.29 12.77 18.18 26.42 0.00 10.00 38.00 13.85 10.57 6.67 10.81 8.96 7.84 8.51 13.51 14.29 6.12 7.41 14.89 6.25 0.00 17.74 9.30 21.21 21.88 26.09 41.67 15.79 25.84 12.20 9.09 15.91 14.71 12.70 20.45 17.50 5.41 35.71 31.25 19.61 15.85 12.33 8.00 19.57 8.93 10.87 16.67 13.42 16.88 21.21 18.18 15.62 6.67 15.38 12.20 14.71 15.15 9.84 K intron_retention CG32809,I_chrX_1571351_1574097,I_chrX_1576815_1577129,I_chrX_1577031_1577129,CEI_chrX_1579569_1579679,RI_chrX_1585391_1586471,I_chrX_1589508_1589564 chrX - chrX_1571351_1575432 chrX_1571350_1571351;chrX_1575432_1575433 chrX_1571251_1571350;chrX_1575433_1575526 0.00 NA NA 6.25 NA NA NA NA 3.85 11.11 NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA 4.88 7.41 0.00 9.09 NA 0.00 NA 9.52 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 6.90 0.00 NA 8.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA K alternative_acceptor CG31601,RI_chr2L_22041689_22041995 chr2L - chr2L_22041665_22042106 chr2L_22041689_22042106 chr2L_22042107_22042347;chr2L_22041589_22041664 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.46 100.00 100.00 98.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.07 K intron_retention eIF-2beta,RI_chr3L_12519486_12519541 chr3L - chr3L_12518778_12519085 chr3L_12518777_12518778;chr3L_12519085_12519086 chr3L_12518191_12518777;chr3L_12519086_12519485 0.10 0.00 0.16 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.11 0.73 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.52 0.32 0.00 0.00 0.00 0.73 0.49 0.56 0.00 0.00 0.09 0.13 0.13 0.41 0.32 0.18 0.00 0.49 0.43 0.00 0.31 0.00 0.44 0.00 0.29 0.33 0.00 0.45 0.37 0.32 0.31 0.00 0.42 0.15 0.00 0.00 0.10 K alternative_acceptor RluA-2,I_chr2L_10480906_10481097 chr2L + chr2L_10482575_10482636 chr2L_10482575_10482624 chr2L_10482285_10482574;chr2L_10482637_10482786 15.19 NA NA 11.11 NA NA 33.33 23.53 13.04 NA NA 15.38 NA NA NA NA 16.67 NA NA 23.08 NA NA 5.56 NA NA NA 6.25 NA NA NA 8.00 NA NA 12.50 NA NA NA NA NA 16.67 12.50 8.33 NA 15.00 14.29 17.39 19.05 25.00 14.29 NA NA NA NA NA 18.75 10.00 16.67 20.83 K intron_retention RI_chrX_7172561_7252693,CG1677,I_chrX_7178792_7252693,Atg5 chrX - chrX_7209284_7216399 chrX_7209283_7209284;chrX_7216399_7216400 chrX_7208648_7209283;chrX_7216400_7216505 24.57 8.00 26.32 26.67 17.39 30.43 35.29 28.57 41.67 NA 40.00 26.19 19.23 24.14 36.36 40.00 34.78 26.32 37.50 22.73 33.33 35.00 30.77 4.76 NA 41.67 17.65 NA NA 22.22 18.52 NA 13.51 33.33 30.77 20.00 13.33 18.18 7.41 25.00 0.00 24.07 36.84 13.04 8.33 28.00 18.18 27.59 25.64 6.67 26.92 29.41 9.52 14.29 22.58 10.53 15.38 13.04 K intron_retention ttv,I_chr2R_10450891_10470424 chr2R + chr2R_10452579_10470424 chr2R_10452578_10452579;chr2R_10470424_10470425 chr2R_10452459_10452578;chr2R_10470425_10470524 9.26 6.90 10.14 6.74 11.43 12.50 10.94 8.86 12.61 4.17 9.62 15.22 11.29 13.64 5.33 10.94 7.81 18.18 11.48 10.92 8.33 10.87 12.05 7.81 4.88 9.30 5.68 15.38 12.12 7.55 10.20 0.00 4.76 11.11 20.00 11.36 7.87 3.77 3.61 5.06 4.76 12.26 11.11 5.08 0.00 0.00 2.17 8.51 9.26 0.00 13.64 10.81 10.00 0.00 15.38 0.00 0.00 4.76 K intron_retention CG42503,Mocs2 chr3R - chr3R_20952165_20952288 chr3R_20952164_20952165;chr3R_20952288_20952289 chr3R_20952151_20952164;chr3R_20952289_20952424 73.68 72.73 71.43 60.00 NA 90.00 85.71 67.86 74.07 NA NA 88.89 77.78 81.82 66.67 70.97 68.75 NA 73.68 80.00 NA 66.67 33.33 76.92 NA 90.91 NA NA NA NA 68.42 NA NA 77.78 NA NA NA NA 69.23 66.67 NA 93.75 76.92 NA 77.78 90.00 58.33 NA 74.07 60.00 NA 81.82 NA NA 66.67 71.43 78.26 71.43 K jcn_only_AD CG17292,RI_chr2L_8372630_8372686 chr2L + chr2L_8372626_8372686 chr2L_8372630_8372686 chr2L_8372687_8372753;chr2L_8372530_8372625 2.30 2.04 2.56 2.56 0.00 4.76 2.00 1.41 0.95 0.00 0.00 2.63 0.00 2.86 2.13 3.77 0.00 3.45 5.26 2.94 3.23 6.98 2.27 1.28 NA 0.00 4.00 7.69 0.00 0.00 10.20 NA 8.00 1.92 0.00 NA 4.44 0.00 6.98 1.54 0.00 4.41 0.00 1.79 0.00 4.65 3.17 0.00 1.27 2.33 3.57 2.70 5.71 6.25 4.55 2.44 0.00 0.00 K multi_cassette CG6845,I_chr3L_148414_148465,I_chr3L_148414_148475,I_chr3L_148414_148489 chr3L + chr3L_147083_148461 chr3L_147083_147729;chr3L_147884_147935;chr3L_148414_148461 chr3L_147730_147883;chr3L_147936_148413 chr3L_146772_147082;chr3L_148462_148555 100.00 100.00 100.00 95.45 90.91 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 90.91 94.12 100.00 100.00 100.00 100.00 88.89 72.73 93.75 100.00 100.00 92.86 91.67 66.67 100.00 100.00 100.00 100.00 83.33 96.15 100.00 87.50 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 88.89 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 92.31 K jcn_only_AD CG33506,RI_chr2R_10745870_10745924 chr2R - chr2R_10745870_10745928 chr2R_10745870_10745924 chr2R_10745770_10745869;chr2R_10745929_10746024 2.67 2.56 2.78 2.17 NA 0.00 0.00 0.00 2.38 0.00 3.45 8.70 NA 4.35 0.00 0.00 NA 7.69 3.45 1.75 NA 7.14 3.57 0.00 2.86 0.00 3.57 0.00 2.17 3.23 25.00 4.76 5.17 2.44 2.94 0.00 0.00 4.76 1.75 3.12 0.00 0.00 NA 2.17 1.85 5.48 5.88 7.02 0.00 7.50 0.00 3.12 4.76 0.00 7.50 5.66 0.00 5.41 K alternative_donor cyc,RI_chr3L_19810268_19810326 chr3L - chr3L_19807351_19807406 chr3L_19807351_19807402 chr3L_19806916_19807350;chr3L_19807407_19807836 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.27 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 5.26 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA 2.56 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG30122,I_chr2R_14526123_14526189 chr2R - chr2R_14520630_14520696 chr2R_14520633_14520696 chr2R_14520697_14520868;chr2R_14520624_14520629 83.70 84.59 87.65 86.29 84.16 84.06 84.44 85.07 82.42 74.42 85.86 80.37 82.99 83.78 83.10 80.82 81.69 85.25 86.02 84.60 88.02 84.43 82.58 82.19 83.70 85.88 82.99 80.61 81.18 85.53 82.21 85.38 82.02 84.27 87.19 82.21 81.51 79.43 83.92 82.81 84.43 83.54 82.93 79.84 84.85 81.76 82.95 85.31 85.25 80.79 85.52 83.10 80.15 83.97 84.76 85.40 80.67 81.91 K alternative_donor Df31,RE_chr2L_21628206_21629662,I_chr2L_21628206_21629666,I_chr2L_21628210_21628515,I_chr2L_21628210_21628944,I_chr2L_21628210_21629216,EI_chr2L_21628210_21629715,REI_chr2L_21628210_21629884,I_chr2L_21628224_21629666,I_chr2L_21628734_21629666 chr2L - chr2L_21628210_21629216;chr2L_21628210_21629666;chr2L_21628210_21628515;chr2L_21628210_21629715;chr2L_21628210_21629884 chr2L_21628210_21628944 chr2L_21628124_21628209;chr2L_21629885_21629918 0.25 0.44 0.17 0.17 0.19 0.21 0.30 0.27 0.33 0.20 0.19 0.19 0.32 0.45 0.45 0.16 0.32 0.19 0.47 0.28 0.40 0.56 0.31 0.14 0.24 0.00 0.46 0.43 0.33 0.38 0.16 0.24 0.48 0.42 0.41 0.24 0.15 0.18 0.21 0.20 0.25 0.25 0.31 0.14 0.39 0.25 0.31 0.00 0.21 0.13 0.42 0.15 0.20 0.38 0.40 0.15 0.16 0.27 K intron_retention RpL8,I_chr3L_2587513_2587750,I_chr3L_2587600_2587750,RI_chr3L_2587690_2587750,I_chr3L_2589746_2592161 chr3L + chr3L_2587514_2587750 chr3L_2587513_2587514;chr3L_2587750_2587751 chr3L_2587500_2587513;chr3L_2587751_2587850 0.10 0.08 0.06 0.04 0.05 0.03 0.12 0.08 0.05 0.08 0.00 0.05 0.14 0.03 0.07 0.04 0.06 0.03 0.06 0.06 0.10 0.26 0.19 0.11 0.04 0.14 0.21 0.23 0.15 0.00 0.15 0.00 0.08 0.07 0.21 0.30 0.11 0.13 0.13 0.06 0.18 0.09 0.15 0.19 0.07 0.19 0.12 0.05 0.12 0.15 0.51 0.15 0.16 0.51 0.07 0.15 0.15 0.07 K jcn_only_AD CG31278,noncoding_15893,RI_chr3R_6533509_6533568 chr3R - chr3R_6533509_6533960;chr3R_6533509_6533579 chr3R_6533509_6533568 chr3R_6533409_6533508;chr3R_6533961_6534040 10.00 NA NA 3.85 NA NA NA 8.00 15.38 NA NA NA NA NA NA NA NA NA NA 8.70 NA NA NA NA NA NA 32.00 NA NA NA 38.46 NA 6.45 8.33 NA NA 14.29 NA 13.79 NA 3.85 10.00 NA NA NA NA NA NA 10.00 NA 10.00 NA NA NA NA 14.29 6.98 2.22 K cassette cana,CG33695 chr2L + chr2L_11278486_11278754 chr2L_11278486_11278574;chr2L_11278674_11278754 chr2L_11278575_11278673 chr2L_11278394_11278485;chr2L_11278755_11279847 78.18 73.33 80.56 84.85 81.82 77.42 81.82 83.72 84.91 86.96 72.00 80.70 76.67 81.82 80.56 87.88 86.36 79.31 84.62 72.06 84.00 65.00 71.70 81.25 61.90 67.74 80.00 66.67 70.18 67.92 84.38 85.71 90.54 78.57 76.32 66.04 79.10 89.47 75.32 76.00 62.71 76.27 72.00 81.08 76.54 69.88 78.85 73.74 80.85 80.82 72.00 72.73 72.58 75.00 88.24 78.18 69.44 73.28 K intron_retention CG11859 chr3R + chr3R_21092272_21092323 chr3R_21092271_21092272;chr3R_21092323_21092324 chr3R_21091893_21092271;chr3R_21092324_21092515 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 12.50 0.00 NA 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA 3.85 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention PH4alphaEFB,I_chr3R_26305150_26309614 chr3R + chr3R_26311115_26311175 chr3R_26311114_26311115;chr3R_26311175_26311176 chr3R_26310949_26311114;chr3R_26311176_26311493 0.00 0.00 1.13 0.00 0.00 1.37 0.00 1.00 0.62 1.08 0.00 0.29 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.92 0.00 2.86 1.24 0.00 0.00 0.00 1.95 4.79 15.18 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.36 0.00 0.58 1.31 0.00 0.00 0.00 0.86 0.49 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.48 0.31 0.00 K intron_retention nrv1 chr2L - chr2L_6786435_6786489 chr2L_6786434_6786435;chr2L_6786489_6786490 chr2L_6786282_6786434;chr2L_6786490_6786856 99.73 99.44 99.51 99.74 100.00 100.00 100.00 99.73 100.00 98.21 100.00 100.00 100.00 100.00 99.52 100.00 99.49 99.41 99.62 99.69 99.34 99.53 99.60 100.00 100.00 100.00 99.49 99.07 100.00 99.14 98.68 100.00 100.00 99.44 99.33 100.00 100.00 100.00 99.30 99.43 100.00 99.16 99.40 99.28 100.00 98.70 100.00 100.00 99.23 99.28 100.00 99.41 99.11 100.00 100.00 99.23 100.00 100.00 K alternative_donor Akt1 chr3R + chr3R_11926502_11926621;chr3R_11924988_11926621;chr3R_11925014_11926621;chr3R_11925383_11926621 chr3R_11925318_11926621 chr3R_11926622_11926719;chr3R_11924974_11924987 43.86 43.86 34.48 39.81 59.52 42.11 52.17 53.47 56.82 34.38 30.00 51.96 50.00 62.26 58.93 31.03 41.51 27.08 53.12 29.13 40.00 20.00 52.22 32.26 38.30 34.15 39.19 54.35 48.89 53.57 56.67 56.67 50.00 47.06 23.53 43.94 61.45 34.09 58.33 50.52 62.22 38.74 47.50 53.33 57.14 38.00 24.53 36.36 47.37 36.00 11.43 59.18 38.71 33.33 34.38 60.87 25.71 28.21 K jcn_only_AA CG5021 chr3L + chr3L_8960617_8960680 chr3L_8960617_8960665 chr3L_8960382_8960616;chr3L_8960681_8960835 49.23 51.59 45.74 54.73 44.60 57.39 50.90 51.34 53.94 51.65 52.42 52.75 47.20 40.00 46.20 49.23 47.46 52.34 53.12 50.00 50.76 45.27 51.03 48.70 50.00 60.74 48.89 56.78 46.94 39.74 44.70 42.11 56.20 49.74 52.17 48.89 52.02 44.80 44.05 44.24 42.11 50.86 54.81 52.32 40.17 47.76 46.51 47.42 47.30 58.91 47.66 55.45 43.75 36.17 51.57 48.20 50.24 43.84 K jcn_only_AA CG11699,CG11696,CG11695 chrX + chrX_11464810_11464899 chrX_11464810_11464871 chrX_11464741_11464809;chrX_11464900_11464968 0.85 0.70 0.00 1.22 0.92 0.00 3.51 1.45 0.00 2.67 0.00 0.85 0.94 0.93 0.00 3.00 2.22 0.52 2.42 0.98 0.00 0.82 0.31 0.47 1.31 0.00 1.35 0.00 1.24 0.90 1.41 0.95 0.51 1.16 0.98 0.74 1.15 1.13 0.45 2.10 0.58 0.29 1.68 0.57 1.17 0.72 0.55 0.96 0.00 2.38 0.74 0.00 0.61 0.73 0.61 1.28 0.00 1.09 K intron_retention CG5004,E_chrX_17024712_17024996 chrX + chrX_17028911_17028977 chrX_17028910_17028911;chrX_17028977_17028978 chrX_17028778_17028910;chrX_17028978_17029994 0.47 1.14 0.00 2.24 0.00 0.00 1.71 1.27 0.47 0.00 0.00 2.29 0.00 2.78 2.27 0.99 0.00 1.94 0.00 1.64 0.00 0.98 0.00 0.81 0.00 0.00 2.34 7.53 1.22 0.00 1.94 0.00 0.00 1.61 0.00 1.32 0.00 1.77 1.80 0.00 0.00 0.00 2.27 0.00 0.00 0.00 1.98 0.00 1.68 0.00 0.00 0.93 2.50 0.00 2.73 0.00 2.14 1.28 K intron_retention orb2,I_chr3L_8942860_8947477 chr3L - chr3L_8942381_8942756 chr3L_8942380_8942381;chr3L_8942756_8942757 chr3L_8941983_8942380;chr3L_8942757_8942850 2.25 0.00 5.71 7.41 0.00 0.00 0.00 0.00 3.41 0.00 0.00 2.94 0.00 0.00 2.38 6.67 0.00 7.14 0.00 2.50 0.00 2.25 1.98 2.91 1.41 0.00 2.60 5.21 4.35 0.00 3.23 5.88 6.67 4.26 0.00 2.70 0.86 1.54 1.39 2.50 6.12 2.78 0.00 2.70 7.94 5.00 0.00 2.70 0.00 8.33 1.98 0.00 0.00 3.77 0.00 0.00 3.70 5.63 K intron_retention CG7903,I_chr3R_25820462_25820871,I_chr3R_25820814_25820871 chr3R - chr3R_25820462_25820514 chr3R_25820461_25820462;chr3R_25820514_25820515 chr3R_25820362_25820461;chr3R_25820515_25820800 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 3.57 0.00 0.00 0.00 NA 3.12 0.00 8.00 0.00 0.00 0.00 NA 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Gga chrX + chrX_9495210_9496113 chrX_9495210_9495286;chrX_9495403_9496113 chrX_9495287_9495402 chrX_9495093_9495209;chrX_9496114_9496708 100.00 100.00 100.00 100.00 94.12 95.24 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 97.92 100.00 100.00 97.73 100.00 100.00 100.00 95.65 100.00 93.75 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 96.67 95.45 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 94.12 100.00 100.00 100.00 100.00 K intron_retention CG18815 chr3L + chr3L_11621695_11622060 chr3L_11621694_11621695;chr3L_11622060_11622061 chr3L_11621663_11621694;chr3L_11622061_11622251 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Eph,I_chr4_631523_634240,I_chr4_632065_634240,I_chr4_632433_632707,I_chr4_632433_632988,I_chr4_639690_640473,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_632065_632138 chr4_632064_632065;chr4_632138_632139 chr4_631965_632064;chr4_632139_632281 93.44 94.12 93.75 90.48 90.00 93.33 92.31 89.58 98.08 NA 100.00 96.88 96.43 90.48 100.00 90.24 95.45 83.33 93.55 96.43 100.00 NA 100.00 92.86 100.00 93.33 93.33 100.00 NA 90.00 91.67 87.50 NA 94.23 100.00 87.50 88.89 NA 90.00 100.00 NA 93.55 96.00 91.67 NA 100.00 NA NA 91.84 NA 95.00 90.91 NA NA 88.00 NA NA NA K jcn_only_AD CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806824_22809684;chr3R_22806314_22809684 chr3R_22806425_22809684 chr3R_22809685_22809939;chr3R_22806256_22806313 51.54 NA NA 54.84 NA 61.90 55.00 47.06 35.71 NA NA 23.53 48.65 NA NA 42.11 NA 61.54 26.92 50.70 NA NA 59.09 NA NA NA NA NA NA 53.57 NA 56.00 65.79 35.00 NA NA NA NA NA NA NA 40.00 NA NA NA 52.38 NA 35.00 45.95 NA 71.43 NA NA NA NA NA 80.95 NA K jcn_only_AA RpS27A,Ip259 chr2L + chr2L_10408387_10409710 chr2L_10408387_10408738 chr2L_10408376_10408386;chr2L_10409711_10410051 11.02 12.95 11.25 12.75 14.02 11.53 13.78 11.79 11.79 8.41 12.42 12.55 9.10 11.29 11.18 8.76 11.02 14.07 11.49 11.71 10.82 13.27 11.36 10.00 12.36 6.70 4.21 5.64 36.52 10.65 9.42 8.28 13.24 10.80 5.75 9.69 25.39 11.15 9.30 10.78 7.78 11.75 12.71 9.84 12.07 6.06 9.53 9.89 13.10 5.67 9.21 13.62 9.71 8.91 11.18 10.23 6.78 10.94 K jcn_only_AD Mes2,CEF_chr3L_22939285_22939369 chr3L + chr3L_22939041_22939369 chr3L_22939285_22939369 chr3L_22939370_22939469;chr3L_22938759_22939040 15.48 19.70 28.87 33.33 19.19 27.88 41.94 39.39 28.40 11.83 24.42 26.39 40.74 27.18 27.56 36.80 26.61 16.52 36.45 28.40 35.64 9.09 8.78 13.59 12.50 26.40 14.18 8.20 4.11 11.19 31.01 11.36 3.92 34.81 13.12 12.41 6.90 11.28 15.48 12.13 3.77 22.61 28.30 13.02 4.24 9.77 10.49 6.51 32.17 11.22 14.95 13.18 12.00 11.22 22.58 15.84 18.10 5.63 K alternative_donor CG5961,RI_chr3R_8285626_8285694,I_chr3R_8285631_8285980 chr3R - chr3R_8285631_8285980 chr3R_8285631_8285694 chr3R_8285531_8285630;chr3R_8285981_8286014 85.71 66.67 81.82 76.47 85.71 62.50 92.86 75.00 76.19 100.00 100.00 86.67 77.78 77.78 90.00 92.86 70.00 88.89 81.82 71.43 87.50 81.82 90.00 92.31 60.00 63.64 72.73 88.89 66.67 87.50 92.86 83.33 85.71 76.47 83.33 55.56 100.00 85.71 87.50 84.21 85.71 91.67 85.71 90.91 85.71 72.73 77.78 90.91 83.33 88.89 91.67 75.00 90.91 87.50 90.00 100.00 91.67 91.67 K intron_retention CG9795,I_chr3R_150391_150451 chr3R + chr3R_150233_150309 chr3R_150232_150233;chr3R_150309_150310 chr3R_150059_150232;chr3R_150310_150390 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention bves chrX + chrX_20947210_20947991 chrX_20947209_20947210;chrX_20947991_20947992 chrX_20947068_20947209;chrX_20947992_20948394 0.00 0.00 0.00 2.70 0.00 6.25 7.89 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 5.56 0.00 4.44 0.00 0.00 0.00 4.35 0.00 0.00 1.67 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 1.00 1.85 0.00 0.00 4.76 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG7177 chr3L - chr3L_21547281_21547653 chr3L_21547280_21547281;chr3L_21547653_21547654 chr3L_21547125_21547280;chr3L_21547654_21547994 17.65 NA NA 14.29 NA NA 16.67 26.32 6.06 36.36 NA 13.33 12.50 NA NA 29.03 NA NA NA 23.08 NA 23.81 29.41 NA NA NA NA NA 40.00 NA 14.29 NA 50.00 12.00 NA 36.36 26.67 NA NA 35.29 NA 12.50 NA NA NA NA NA 15.38 14.29 NA 17.65 NA NA NA 12.50 NA NA NA K intron_retention RpS20 chr3R + chr3R_16647996_16648139 chr3R_16647995_16647996;chr3R_16648139_16648140 chr3R_16647888_16647995;chr3R_16648140_16648294 0.00 0.02 0.00 0.00 0.00 0.00 0.03 0.00 0.08 0.16 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.05 0.00 0.03 0.08 0.13 0.00 0.00 0.13 0.33 0.09 0.00 0.12 0.00 0.00 0.04 0.00 0.09 0.03 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.09 0.00 0.05 0.00 0.38 0.00 0.05 0.00 0.05 0.00 0.00 0.05 0.07 0.15 K jcn_only_AA CG4389,I_chr2L_9576230_9576665 chr2L - chr2L_9576230_9576517 chr2L_9576381_9576517 chr2L_9576518_9576757;chr2L_9576130_9576229 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.91 0.89 0.74 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.84 0.00 0.47 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CkIIbeta,I_chrX_11686847_11687475,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11686979_11687475;chrX_11686948_11687475;chrX_11687313_11687475 chrX_11687025_11687475 chrX_11687476_11687551;chrX_11686929_11686947 11.36 14.58 14.00 22.97 7.89 17.07 10.00 21.05 18.10 NA 3.57 23.08 29.27 15.79 10.42 2.63 19.51 6.67 14.04 27.94 9.68 9.52 15.38 12.20 13.64 9.38 8.16 NA 4.00 15.00 9.84 10.00 5.13 13.70 10.34 7.41 5.71 6.90 6.90 8.51 2.13 10.11 11.11 31.82 6.67 14.55 14.71 11.36 14.58 13.79 21.95 10.00 14.71 4.55 21.33 5.71 15.09 13.41 K alternative_donor sdk,I_chrX_581050_581605,I_chrX_581108_581660,I_chrX_625220_634459,I_chrX_636395_636562 chrX + chrX_581160_581605;chrX_581108_581605;chrX_580974_581605 chrX_581043_581605 chrX_581606_581705;chrX_580950_580973 8.33 25.00 11.11 11.11 NA 16.67 0.00 8.33 0.00 25.00 NA 9.09 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 10.00 12.50 12.50 16.67 NA 14.29 25.00 14.29 11.11 12.50 NA 5.00 8.33 12.50 11.11 0.00 20.00 12.50 7.14 NA 0.00 0.00 0.00 NA 0.00 0.00 5.88 0.00 NA 22.22 25.00 NA NA 0.00 NA NA 16.67 K jcn_only_AD CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1666219_1670203;chr2R_1666219_1670219;chr2R_1666219_1669803;chr2R_1666219_1670281 chr2R_1666219_1670325 chr2R_1666119_1666218;chr2R_1670326_1670328 4.76 0.00 0.00 20.00 25.00 8.00 8.89 12.73 5.45 0.00 5.00 4.17 13.16 6.06 12.90 1.49 15.79 8.00 12.12 13.89 4.76 NA 3.85 0.00 NA 10.71 0.00 NA 6.45 0.00 4.26 3.23 3.45 12.12 0.00 0.00 0.00 NA NA 11.11 0.00 5.26 3.23 10.87 4.76 7.41 NA 4.05 9.88 0.00 0.00 0.00 4.76 NA 0.00 NA 4.76 3.90 K intron_retention Tao-1,I_chrX_19471628_19472934 chrX - chrX_19471628_19471934 chrX_19471627_19471628;chrX_19471934_19471935 chrX_19471528_19471627;chrX_19471935_19472535 66.67 50.00 61.11 60.00 83.33 47.37 57.89 70.97 70.00 58.82 NA 83.33 NA 57.14 52.63 37.14 69.23 50.00 76.47 56.76 50.00 87.23 65.00 43.75 75.00 66.67 52.63 NA 82.35 73.91 65.38 90.00 76.19 56.67 76.47 NA 75.00 69.23 53.85 70.27 71.43 63.64 80.00 56.25 90.00 77.78 77.78 75.00 52.78 71.43 61.11 63.16 NA NA 66.67 NA NA 76.92 K intron_retention mav,RI_chr4_645290_646129 chr4 - chr4_646243_646421 chr4_646242_646243;chr4_646421_646422 chr4_646135_646242;chr4_646422_646475 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 NA 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 NA NA 92.31 100.00 NA 95.00 100.00 100.00 100.00 NA 100.00 NA 94.12 NA 100.00 93.75 100.00 NA 93.33 NA NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K intron_retention yuri,F_chr2L_15260838_15261717 chr2L - chr2L_15263665_15263769 chr2L_15263664_15263665;chr2L_15263769_15263770 chr2L_15263332_15263664;chr2L_15263770_15264095 0.00 4.26 3.23 0.69 0.00 0.00 1.64 2.11 0.80 0.00 0.00 0.00 0.00 1.54 2.11 1.79 1.32 0.00 1.15 0.00 0.00 3.01 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 11.76 0.00 0.69 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor skpA chrX + chrX_550498_551131;chrX_550818_551131;chrX_550638_551131;chrX_550774_551131;chrX_550523_551131;chrX_550654_551131 chrX_550433_551131 chrX_551132_551937;chrX_550426_550432 34.44 46.27 43.10 28.30 43.40 41.51 30.93 38.74 50.29 30.30 34.48 34.88 44.12 49.12 34.48 34.55 48.33 31.51 42.86 30.33 37.04 17.65 33.33 45.83 41.67 40.85 7.41 17.02 1.64 26.67 24.24 24.44 26.67 34.44 38.71 7.69 28.28 39.29 31.15 15.12 13.64 41.59 36.36 27.12 19.05 14.29 35.19 14.29 42.59 37.93 31.67 40.68 19.57 36.36 33.78 29.41 37.31 15.91 K intron_retention CG14621,tilB chrX + chrX_21847145_21847610 chrX_21847144_21847145;chrX_21847610_21847611 chrX_21846654_21847144;chrX_21847611_21847819 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr2R_4783150_4783708,Ggamma1,noncoding_5300 chr2R + chr2R_4789292_4789641 chr2R_4789291_4789292;chr2R_4789641_4789642 chr2R_4789223_4789291;chr2R_4789642_4789782 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 93.75 93.75 100.00 100.00 100.00 92.86 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 94.12 100.00 100.00 84.62 100.00 91.67 100.00 100.00 NA 97.30 100.00 100.00 92.31 100.00 100.00 88.89 96.15 100.00 100.00 100.00 88.89 100.00 94.74 100.00 NA 91.67 K intron_retention bel,I_chr3R_4483665_4483736,I_chr3R_4484110_4485922 chr3R - chr3R_4483566_4483736 chr3R_4483565_4483566;chr3R_4483736_4483737 chr3R_4483565_4483565;chr3R_4483737_4483836 1.06 1.83 4.65 2.94 0.00 2.50 7.69 4.03 0.97 0.00 6.25 2.12 7.41 6.25 0.00 0.00 0.00 0.00 5.71 1.63 2.78 1.10 0.77 0.89 3.21 2.86 1.55 1.88 0.63 1.39 0.00 0.82 0.20 1.97 0.71 2.05 1.29 1.06 1.06 1.36 2.49 0.75 0.00 1.66 0.46 0.53 0.57 0.47 0.79 2.33 1.76 0.00 0.96 0.00 0.00 1.46 0.98 0.89 K cassette CG15111 chr2R + chr2R_15025767_15027198 chr2R_15025767_15026645;chr2R_15026855_15027198 chr2R_15026646_15026854 chr2R_15025733_15025766;chr2R_15027199_15027317 57.14 54.17 60.00 55.26 63.16 70.83 60.00 59.62 69.57 71.43 61.11 76.32 78.95 65.22 53.57 65.22 50.00 66.67 68.75 62.50 55.00 30.00 54.84 60.00 50.00 47.06 62.86 43.75 30.00 57.89 54.55 58.33 53.57 63.83 50.00 65.00 61.11 42.11 48.15 34.21 42.86 56.52 57.14 37.50 40.00 45.00 58.82 51.52 64.00 60.00 62.50 62.50 43.48 57.14 58.06 56.00 56.67 45.00 K alternative_donor lqfR,I_chr3R_18240000_18243534,I_chr3R_18243588_18243830 chr3R + chr3R_18240000_18243830 chr3R_18243588_18243830 chr3R_18243831_18243930;chr3R_18239900_18239999 28.30 19.51 22.22 18.92 23.08 24.14 23.33 31.43 31.48 35.00 19.35 23.53 31.58 69.23 34.48 51.43 33.33 36.36 36.36 25.00 28.57 28.21 23.44 30.00 17.65 25.00 28.57 42.11 26.09 27.27 30.00 22.22 54.84 33.33 23.33 28.57 16.18 21.95 19.30 28.30 31.82 29.63 43.75 19.57 29.03 26.32 23.81 41.38 32.08 30.56 25.49 29.03 20.00 14.29 28.57 24.14 26.92 33.33 K jcn_only_AD cul-2,I_chr2L_21658962_21659119,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21658855_21659094 chr2L_21658962_21659094 chr2L_21659095_21659272;chr2L_21658557_21658854 15.00 11.11 15.79 10.64 12.77 14.89 25.88 6.31 10.66 NA 13.95 17.58 3.64 6.00 18.46 5.10 17.95 10.53 5.80 3.82 3.51 23.81 14.29 28.00 NA 26.19 15.69 30.43 25.64 3.23 8.64 NA 20.93 12.86 12.00 21.43 13.16 15.38 15.38 18.18 25.00 16.35 10.64 18.42 15.00 18.52 6.45 26.92 15.04 10.00 9.62 24.14 16.00 NA 14.55 19.23 13.04 39.13 N jcn_only_AA noncoding_7217 chr2R + chr2R_12100101_12105155 chr2R_12100101_12100210 chr2R_12099944_12100100;chr2R_12105156_12105401 90.91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA NA K intron_retention CG30090,RI_chr2R_11577574_11577625 chr2R + chr2R_11577938_11577984 chr2R_11577937_11577938;chr2R_11577984_11577985 chr2R_11577759_11577937;chr2R_11577985_11578490 15.46 10.64 11.86 22.03 18.60 21.74 23.71 9.22 12.68 NA 8.47 8.33 12.90 7.81 10.96 15.46 9.23 13.89 10.81 13.97 16.95 3.92 21.43 17.14 5.88 16.95 21.05 NA 28.57 NA 33.90 23.81 27.78 12.04 25.00 NA 30.00 18.92 7.89 15.56 30.00 11.36 14.00 25.93 13.79 19.35 16.67 29.41 13.64 13.33 7.55 21.05 22.22 6.45 14.29 17.65 13.70 22.50 K cassette RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12922514_12924321 chr2R_12922514_12923162;chr2R_12923913_12924321 chr2R_12923163_12923912 chr2R_12922340_12922513;chr2R_12924322_12924406 98.95 98.33 100.00 98.98 97.87 96.36 97.70 98.90 99.32 97.92 97.06 100.00 96.36 98.28 98.31 100.00 98.04 100.00 100.00 99.21 100.00 98.61 99.15 100.00 98.31 96.49 100.00 100.00 100.00 100.00 100.00 100.00 98.10 97.00 96.83 100.00 98.35 98.44 98.95 99.19 100.00 100.00 100.00 96.81 100.00 100.00 97.56 99.05 98.21 98.08 97.85 98.21 100.00 100.00 98.55 100.00 96.97 98.04 K intron_retention Myo61F,mtacp1,I_chr3L_1330291_1331279,RI_chr3L_1330929_1331041,l(3)02640 chr3L + chr3L_1330048_1330130 chr3L_1330047_1330048;chr3L_1330130_1330131 chr3L_1329983_1330047;chr3L_1330131_1330290 1.99 2.01 2.60 2.08 1.87 2.04 1.80 0.68 2.24 3.09 1.90 1.56 1.39 1.85 1.46 2.65 0.88 2.02 1.52 2.38 1.38 1.88 1.88 2.27 1.74 3.11 3.55 2.99 5.92 2.61 1.75 3.03 4.11 2.92 3.73 4.72 2.23 2.33 4.17 1.75 6.25 1.86 1.14 1.00 1.84 2.38 1.62 1.59 1.87 0.99 2.36 1.99 0.91 2.20 1.79 2.95 1.44 1.06 K jcn_only_AA Gs2 chrX + chrX_11318137_11318314;chrX_11318137_11318302 chrX_11318137_11318297 chrX_11318068_11318136;chrX_11318315_11318487 0.00 0.00 0.00 0.00 NA 0.00 2.44 NA 0.00 0.00 NA 2.04 NA NA 0.00 0.00 NA NA 0.00 0.00 NA 0.61 2.33 0.00 0.00 0.00 0.00 1.64 0.00 0.00 2.50 0.00 0.00 0.00 0.00 6.38 0.00 NA 0.00 1.47 0.00 0.00 NA 0.00 3.12 0.00 5.08 0.00 2.56 0.64 0.00 NA 0.00 0.00 0.00 NA 0.00 NA K intron_retention CG17219,RFI_chr2L_3030576_3030666,GABPI chr2L + chr2L_3030576_3030669 chr2L_3030575_3030576;chr2L_3030669_3030670 chr2L_3030562_3030575;chr2L_3030670_3030766 77.09 91.67 71.43 69.23 54.55 71.43 55.00 75.86 56.25 NA 54.55 76.00 83.33 80.00 68.75 80.77 66.67 50.00 55.56 77.27 72.73 100.00 84.62 90.00 91.67 88.89 92.86 NA 85.71 NA 81.82 88.89 66.67 72.00 69.23 100.00 NA 100.00 87.50 77.27 66.67 56.67 62.50 93.75 75.00 91.67 NA 64.00 71.88 80.00 91.67 76.92 81.82 90.00 68.18 92.31 88.89 54.17 K intron_retention CG8485 chr2R - chr2R_10125207_10125261 chr2R_10125206_10125207;chr2R_10125261_10125262 chr2R_10125080_10125206;chr2R_10125262_10125387 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD E(bx),I_chr3L_246324_246699 chr3L - chr3L_246324_246885;chr3L_246324_246438;chr3L_246324_246794;chr3L_246324_246382;chr3L_246324_246388;chr3L_246324_246427 chr3L_246324_246408 chr3L_246224_246323;chr3L_246886_246901 5.13 8.51 1.85 1.30 10.00 4.44 1.28 5.26 11.76 0.00 0.00 5.49 9.43 9.09 4.41 6.59 5.00 6.12 1.79 6.56 10.20 5.63 7.14 9.09 6.25 3.45 0.00 2.70 3.85 8.51 0.00 NA 6.45 4.65 5.00 1.89 5.88 0.00 4.35 9.59 NA 2.47 6.12 7.55 NA NA NA 0.00 7.07 NA 4.23 5.71 NA NA 1.89 NA NA NA K jcn_only_AA wb chr2L + chr2L_14325555_14326434 chr2L_14325555_14325695 chr2L_14324897_14325554;chr2L_14326435_14327053 22.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA K intron_retention Cct1,Cct2 chr3L + chr3L_1546677_1550713 chr3L_1546676_1546677;chr3L_1550713_1550714 chr3L_1546599_1546676;chr3L_1550714_1551288 27.59 26.32 21.88 20.00 26.92 31.71 33.33 28.21 30.91 33.33 50.00 32.08 25.93 31.03 32.26 33.33 36.36 19.51 23.08 28.79 29.63 29.79 24.39 33.33 21.05 21.05 39.02 47.06 41.38 18.52 23.08 29.41 11.76 31.71 36.36 20.00 25.86 14.29 24.56 23.26 19.05 29.58 31.58 33.33 20.37 26.67 26.47 27.59 31.25 34.62 25.53 17.39 25.00 30.00 21.88 24.32 22.22 30.00 K alternative_last_exon btz,I_chr3R_23526114_23526320 chr3R + chr3R_23526114_23526320 chr3R_23526114_23526187 chr3R_23526321_23529206 chr3R_23526188_23526247 chr3R_23526112_23526113 0.00 20.00 0.00 25.00 0.00 0.00 25.00 33.33 16.67 0.00 0.00 33.33 0.00 0.00 0.00 0.00 0.00 0.00 50.00 25.00 0.00 33.33 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 37.50 25.00 0.00 0.00 0.00 0.00 12.50 40.00 20.00 25.00 33.33 20.00 20.00 0.00 0.00 0.00 33.33 14.29 0.00 0.00 0.00 20.00 0.00 0.00 0.00 16.67 K intron_retention Eph,I_chr4_634992_635661,I_chr4_635755_635815,I_chr4_639690_640473,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_635049_635661 chr4_635048_635049;chr4_635661_635662 chr4_634777_635048;chr4_635662_635754 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.65 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K jcn_only_AD p53,CG17119,sav chr3R - chr3R_18876847_18878643 chr3R_18876847_18876911 chr3R_18876537_18876846;chr3R_18878644_18878670 36.03 NA 34.62 44.83 52.38 NA 57.14 41.94 35.71 NA NA 20.00 NA NA 31.82 31.82 NA NA NA 38.10 NA NA NA 28.57 NA NA NA 90.62 61.54 NA 30.43 NA NA 28.00 NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA 38.46 80.56 NA NA NA NA 29.17 NA NA 9.09 K intron_retention CG42550 chr3R - chr3R_3826738_3826808 chr3R_3826737_3826738;chr3R_3826808_3826809 chr3R_3826648_3826737;chr3R_3826809_3826809 10.00 10.00 14.81 11.76 NA 0.00 12.50 9.52 12.28 NA NA 4.44 8.00 12.00 8.33 14.29 11.76 25.00 6.90 8.89 NA 0.00 12.12 5.00 NA 10.00 0.00 NA NA NA 10.71 12.00 NA 8.51 0.00 9.09 NA NA NA 6.45 0.00 21.95 22.22 23.08 8.33 8.33 0.00 12.50 18.42 10.53 7.41 NA NA 0.00 8.70 13.64 13.04 33.33 K cassette RI_chrX_11473566_11473702,roX2,noncoding_23149,I_chrX_11475074_11475402 chrX + chrX_11473433_11473702 chrX_11473433_11473485;chrX_11473562_11473702 chrX_11473486_11473561 chrX_11473419_11473432;chrX_11473703_11473726 50.00 NA NA 57.14 NA NA NA 66.67 60.00 NA NA 68.75 NA NA NA 50.00 NA NA 30.00 57.89 NA NA NA NA NA 44.44 NA NA NA NA 50.00 NA NA 50.00 NA NA NA NA NA 50.00 NA 46.67 44.44 NA NA 57.14 NA NA 64.29 NA NA NA NA NA 45.45 NA NA NA K jcn_only_AA Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4847655_4848167;chrX_4847655_4847757 chrX_4847655_4848149 chrX_4847526_4847654;chrX_4848168_4848168 82.35 84.00 78.95 89.47 72.97 76.47 71.11 82.61 69.23 75.00 75.00 82.93 NA 85.71 75.68 86.05 89.74 NA 81.25 89.19 83.33 80.85 78.08 77.14 76.60 NA 86.67 90.62 89.19 81.36 82.76 80.65 85.29 78.95 85.19 87.18 75.86 82.61 75.68 85.42 91.67 84.91 86.36 78.85 84.44 82.46 75.00 78.00 86.27 76.92 76.47 89.58 NA 86.84 77.27 77.42 73.33 82.35 K alternative_last_exon EI_chr3R_11090999_11091648,Oscp,I_chr3R_11091413_11092154 chr3R + chr3R_11091413_11092154 chr3R_11091413_11091648 chr3R_11092155_11094733 chr3R_11091649_11092092 chr3R_11091313_11091412 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27761114_27762991,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27707594_27801169 chr3R_27707594_27771343;chr3R_27771381_27784756;chr3R_27784850_27801169 chr3R_27771344_27771380;chr3R_27784757_27784849 chr3R_27707494_27707593;chr3R_27801170_27801219 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 85.71 100.00 100.00 100.00 NA 100.00 100.00 90.91 100.00 87.50 100.00 100.00 100.00 83.33 100.00 NA 80.00 100.00 100.00 NA 85.71 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 90.91 100.00 88.89 NA 100.00 100.00 100.00 83.33 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 87.50 K alternative_donor Gbeta13F,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754284_15755409;chrX_15754356_15755409 chrX_15755345_15755409 chrX_15755410_15755509;chrX_15754256_15754283 8.82 7.23 7.23 8.00 9.23 8.57 7.45 9.82 9.91 10.81 9.80 19.31 24.36 14.85 9.72 6.88 9.33 8.33 9.80 9.15 7.27 5.32 4.90 15.38 6.56 13.43 5.75 10.81 4.26 10.53 8.18 8.57 12.24 10.00 8.82 15.38 8.33 5.08 8.62 14.74 7.32 10.96 16.67 6.60 12.00 11.43 6.35 13.85 10.99 10.81 8.70 7.45 5.41 7.41 9.09 5.26 3.95 8.33 K alternative_donor alpha-Man-I,I_chrX_10218352_10219759,I_chrX_10218390_10219759 chrX - chrX_10218390_10219816;chrX_10218390_10219823;chrX_10218390_10219846;chrX_10218390_10219759 chrX_10218390_10219708 chrX_10218290_10218389;chrX_10219847_10219859 20.00 20.00 NA 16.67 NA 28.57 33.33 16.67 15.38 NA 33.33 13.33 22.22 28.57 22.22 12.50 16.67 42.86 16.67 20.00 NA 20.00 20.00 16.67 NA 14.29 14.29 NA NA 33.33 20.00 NA 20.00 18.18 20.00 25.00 NA NA 16.67 12.50 NA 22.22 28.57 NA NA 16.67 NA 40.00 15.38 NA 16.67 20.00 20.00 NA 22.22 NA 25.00 16.67 K jcn_only_AD noncoding_10144,I_chr3L_2378250_2402554,CG13800,CI_chr3L_2400617_2402554,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2388782_2402554 chr3L_2400617_2402554 chr3L_2402555_2402654;chr3L_2388717_2388781 90.24 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 92.11 86.21 NA NA NA NA NA NA NA NA NA NA NA NA NA 87.88 90.48 NA NA NA NA NA 90.00 NA 95.00 NA 84.00 NA NA NA 96.67 NA NA NA NA NA NA K intron_retention CG7203,I_chr2L_7795654_7795717,Herp chr2L - chr2L_7797327_7797396 chr2L_7797326_7797327;chr2L_7797396_7797397 chr2L_7796455_7797326;chr2L_7797397_7797732 4.17 4.17 0.00 5.88 0.00 7.41 4.17 3.03 4.05 18.52 2.22 1.19 0.00 5.56 2.38 8.00 8.70 3.33 0.00 3.91 4.44 11.96 6.06 7.84 0.00 0.00 3.51 6.90 16.36 8.62 0.00 5.26 4.21 5.56 4.65 3.39 8.51 0.00 3.17 4.42 5.06 6.85 0.00 11.94 2.50 8.25 1.92 1.59 0.00 8.00 7.02 11.54 0.00 2.90 0.00 8.00 0.00 4.00 K alternative_acceptor CG13760 chrX - chrX_2478582_2478699 chrX_2478636_2478699 chrX_2478700_2478968;chrX_2478496_2478581 11.86 13.79 16.67 8.51 8.70 8.00 13.16 13.16 10.47 13.33 10.34 13.56 12.50 8.70 6.00 11.54 13.04 13.79 15.38 13.48 7.14 9.52 11.86 8.93 8.00 18.75 11.11 13.64 15.79 6.52 14.71 14.29 12.24 10.64 6.90 5.26 6.10 15.00 7.14 19.15 14.29 12.31 17.24 19.35 8.89 8.93 12.50 9.68 9.52 13.16 9.09 5.88 13.33 8.70 15.38 2.70 16.22 9.09 K jcn_only_AA CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15766003_15766068;chrX_15766003_15766062 chrX_15766003_15766047 chrX_15765903_15766002;chrX_15766069_15766147 4.55 6.25 7.41 4.55 4.35 NA 7.02 9.23 2.82 NA 4.17 7.27 0.00 4.00 3.03 2.33 8.33 NA 5.00 2.13 NA NA 0.00 NA NA 14.29 NA NA NA NA 2.70 NA NA 5.56 NA NA NA NA NA 11.76 NA 1.61 0.00 7.41 NA NA NA NA 5.00 NA 12.90 NA NA NA 2.04 NA NA NA K intron_retention glo,I_chr3R_7643675_7643727,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7642480_7642915 chr3R_7642479_7642480;chr3R_7642915_7642916 chr3R_7642334_7642479;chr3R_7642916_7643060 2.94 2.56 2.94 14.29 0.00 0.00 2.74 9.62 5.45 5.00 0.00 6.06 8.16 10.00 4.48 7.78 10.34 0.00 3.75 5.56 3.85 0.00 3.16 3.88 0.00 0.00 2.00 2.44 5.88 2.27 3.28 2.63 2.35 4.35 2.70 2.82 1.80 0.00 2.29 2.82 1.59 5.15 9.43 2.22 0.00 4.88 3.74 7.21 4.48 4.63 4.00 2.78 0.98 2.41 2.04 2.13 3.28 4.92 K alternative_acceptor Mnf,RI_chr3L_11108516_11108583,RI_chr3L_11108913_11109028 chr3L - chr3L_11108516_11108583 chr3L_11108519_11108583 chr3L_11108584_11108680;chr3L_11108416_11108515 93.33 90.91 90.00 93.75 NA NA 100.00 94.44 96.00 88.89 NA 100.00 NA NA NA NA NA NA NA 90.91 100.00 93.75 100.00 90.00 87.50 100.00 93.75 85.71 100.00 100.00 77.78 87.50 88.89 90.91 75.00 100.00 100.00 NA 95.45 93.33 NA 95.24 NA NA 91.67 91.67 84.62 88.89 90.48 93.75 93.33 NA 91.67 87.50 NA 100.00 80.00 100.00 K intron_retention Gint3,CG42306 chr2R - chr2R_14547436_14547490 chr2R_14547435_14547436;chr2R_14547490_14547491 chr2R_14546425_14547435;chr2R_14547491_14547629 0.00 0.00 0.00 0.00 0.00 1.15 1.56 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 1.34 0.00 0.00 0.00 0.00 2.40 1.85 3.57 0.00 0.00 0.00 0.00 0.00 0.00 3.37 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG3368,Hmu chr3R + chr3R_23109531_23109679 chr3R_23109627_23109679 chr3R_23109680_23111749;chr3R_23109485_23109530 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 96.15 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 98.46 97.06 100.00 98.63 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 K jcn_only_AA ade5,I_chrX_12653069_12653157 chrX - chrX_12653946_12654381 chrX_12653949_12654381 chrX_12654382_12654426;chrX_12653745_12653945 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N intron_retention RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817,snoRNA:Psi28S-2444 chr2R + chr2R_15330246_15330817 chr2R_15330245_15330246;chr2R_15330817_15330818 chr2R_15330177_15330245;chr2R_15330818_15330917 36.36 NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 35.71 NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA K intron_retention Gel,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_66437_66599 chr3R_66436_66437;chr3R_66599_66600 chr3R_66433_66436;chr3R_66600_66699 2.62 1.53 2.76 5.28 3.69 3.33 3.06 1.28 2.96 2.12 4.78 2.82 4.02 1.58 2.73 3.07 2.03 2.31 2.07 2.62 3.23 3.82 3.57 2.46 2.56 2.31 3.65 5.05 5.32 2.56 2.69 2.16 1.44 2.61 3.30 2.33 3.06 3.17 2.27 1.73 1.64 1.82 3.64 2.83 1.80 1.81 2.14 2.37 1.81 3.83 3.83 4.81 1.78 2.79 2.00 2.42 2.80 1.62 K intron_retention CG2698,I_chr3R_3828169_3828941,I_chr3R_3828880_3828941,I_chr3R_3829483_3829715,I_chr3R_3830586_3830981 chr3R + chr3R_3829483_3829721 chr3R_3829482_3829483;chr3R_3829721_3829722 chr3R_3829383_3829482;chr3R_3829722_3829815 73.68 66.67 76.67 69.57 56.25 77.78 78.57 69.57 81.25 85.71 78.95 78.57 91.67 70.37 73.53 73.81 78.95 100.00 75.76 75.93 73.68 76.92 72.09 65.00 78.12 79.31 67.44 72.22 70.59 70.83 70.21 73.91 86.96 72.55 70.83 78.26 66.67 68.97 79.49 70.00 80.95 65.38 75.86 68.42 46.67 75.86 77.27 75.00 86.67 71.11 64.29 77.78 57.89 68.18 63.33 71.88 55.26 89.47 K intron_retention abo chr2L - chr2L_10974211_10974267 chr2L_10974210_10974211;chr2L_10974267_10974268 chr2L_10973448_10974210;chr2L_10974268_10975309 0.00 0.00 0.00 17.65 0.00 0.00 0.00 0.00 1.85 NA NA 0.00 0.00 0.00 0.00 2.78 0.00 NA 0.00 0.00 NA 0.00 4.00 0.00 NA 0.00 7.41 NA NA 0.00 0.00 0.00 5.56 0.00 NA NA 0.00 NA 0.00 10.53 0.00 2.56 0.00 0.00 4.76 0.00 0.00 NA 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 K intron_retention CG17490,RI_chr2L_22433057_22433102 chr2L + chr2L_22433057_22433109 chr2L_22433056_22433057;chr2L_22433109_22433110 chr2L_22432957_22433056;chr2L_22433110_22433202 0.00 10.00 6.25 10.00 NA 0.00 2.22 1.92 7.32 NA NA 11.76 0.00 0.00 0.00 6.85 NA 0.00 8.70 0.00 0.00 NA NA 6.67 NA NA NA NA NA NA NA NA NA 4.65 0.00 NA NA NA NA 5.00 NA 6.06 0.00 0.00 NA 0.00 0.00 NA 2.27 4.35 3.70 7.14 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG6179,RI_chrX_18274964_18275006 chrX + chrX_18274964_18275023 chrX_18274964_18275006 chrX_18274864_18274963;chrX_18275024_18275106 0.00 4.08 2.17 2.56 0.00 0.00 0.00 3.23 1.56 0.00 4.00 1.56 0.00 NA 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 3.45 1.32 2.44 NA 0.00 2.38 0.00 2.22 0.00 0.00 1.89 0.00 2.22 2.04 0.00 0.00 0.00 9.09 6.90 0.00 0.00 0.00 3.70 0.00 1.89 0.00 1.45 0.00 0.00 4.00 1.32 0.00 0.00 0.00 1.80 2.13 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814174;chr2R_2814327_2816013;chr2R_2816342_2817327;chr2R_2817604_2817753 chr2R_2814175_2814326;chr2R_2816014_2816341;chr2R_2817328_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD skd chr3L - chr3L_21018649_21020395;chr3L_21018649_21019229;chr3L_21018649_21020239 chr3L_21018649_21020285 chr3L_21018052_21018648;chr3L_21020396_21020501 12.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4984610_4984712 chr2L_4984609_4984610;chr2L_4984712_4984713 chr2L_4984536_4984609;chr2L_4984713_4984812 2.25 0.00 3.57 0.00 0.00 0.00 4.84 1.22 4.00 0.00 5.26 2.11 5.71 0.00 0.00 0.00 0.00 2.63 2.13 0.00 0.00 8.89 2.25 2.56 2.44 0.00 4.48 9.30 3.92 3.57 1.89 8.00 1.92 0.00 0.00 0.00 4.04 3.57 0.00 4.13 6.06 2.04 4.00 3.28 6.67 8.11 0.00 2.08 4.76 15.38 7.27 5.41 0.00 0.00 1.49 8.00 0.00 9.09 K alternative_acceptor CG6454,I_chr3R_20175958_20178905 chr3R + chr3R_20175958_20177774 chr3R_20175958_20176448 chr3R_20175858_20175957;chr3R_20177775_20178073 9.64 10.71 10.81 12.50 8.70 8.33 17.86 12.24 7.89 19.05 8.57 25.58 8.70 10.00 11.76 10.53 11.76 8.00 9.38 9.64 10.71 18.64 12.24 10.26 15.38 7.41 13.16 16.67 9.68 11.36 12.90 6.67 10.13 10.53 8.82 12.50 8.93 9.38 6.90 10.00 8.33 12.07 8.70 5.45 6.06 9.09 8.33 7.46 11.11 7.41 9.09 7.69 6.67 7.14 8.82 9.52 9.09 11.90 N alternative_acceptor noncoding_14363 chr3LHet - chr3LHet_709113_709194;chr3LHet_709103_709194 chr3LHet_709127_709194 chr3LHet_709195_709261;chr3LHet_709044_709102 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 4.11 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention scu,noncoding_24518 chrX + chrX_17985424_17985587 chrX_17985423_17985424;chrX_17985587_17985588 chrX_17985361_17985423;chrX_17985588_17985687 32.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 63.64 NA NA NA NA NA NA NA NA NA NA 15.79 NA NA NA NA NA NA NA NA 25.00 NA NA NA NA 40.00 25.00 NA NA 54.55 NA NA NA NA NA NA NA NA NA K intron_retention Pms2,I_chr2R_11257708_11257764 chr2R - chr2R_11256245_11256298 chr2R_11256244_11256245;chr2R_11256298_11256299 chr2R_11255991_11256244;chr2R_11256299_11257012 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA NA 3.33 0.00 0.00 NA 0.00 6.67 NA NA NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG12050,I_chr2L_21095413_21095474,RI_chr2L_21095413_21095659 chr2L - chr2L_21095413_21099036 chr2L_21095413_21095659 chr2L_21095313_21095412;chr2L_21099037_21099407 0.00 0.00 0.00 1.69 0.00 1.37 0.00 1.32 0.59 0.00 1.69 0.00 2.35 0.00 0.00 0.00 0.00 1.11 0.00 0.62 0.00 1.85 1.68 0.85 0.00 4.41 0.00 2.44 1.64 1.69 0.00 0.00 0.83 0.00 0.00 0.00 2.21 0.00 0.00 0.00 2.99 1.05 1.52 0.00 0.00 1.14 3.23 0.00 0.00 2.80 2.00 4.84 0.00 3.08 1.83 0.00 0.00 0.00 K jcn_only_AA Klc,I_chr3L_12741058_12741155,I_chr3L_12741783_12742943,I_chr3L_12741838_12743062 chr3L - chr3L_12741042_12741155 chr3L_12741058_12741155 chr3L_12741156_12741255;chr3L_12740958_12741041 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.20 0.20 0.29 0.00 0.00 0.00 0.26 0.26 0.00 0.00 0.53 0.00 0.00 0.33 0.15 0.22 0.15 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.24 0.00 0.00 0.26 K intron_retention Mkk4 chr3R - chr3R_4476042_4476202 chr3R_4476041_4476042;chr3R_4476202_4476203 chr3R_4475200_4476041;chr3R_4476203_4476606 0.00 0.00 0.00 1.43 0.00 1.67 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 3.51 0.00 0.00 0.00 0.00 0.00 0.00 6.85 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 1.92 2.00 3.30 1.15 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 1.37 5.71 0.00 0.00 K intron_retention CG5869,RI_chr2L_16302612_16302752 chr2L - chr2L_16302452_16302517 chr2L_16302451_16302452;chr2L_16302517_16302518 chr2L_16302261_16302451;chr2L_16302518_16302611 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention GXIVsPLA2,I_chr3L_15948429_15948487,I_chr3L_15950680_15950738 chr3L + chr3L_15948648_15948710 chr3L_15948647_15948648;chr3L_15948710_15948711 chr3L_15948493_15948647;chr3L_15948711_15949498 6.38 2.17 0.00 13.64 0.00 0.00 21.74 5.00 4.60 8.00 0.00 6.56 0.00 10.00 6.98 7.41 4.35 0.00 0.00 5.31 0.00 50.88 8.89 6.98 18.18 9.38 12.82 21.74 26.32 0.00 6.82 8.16 8.22 5.88 12.50 33.33 4.84 6.38 8.62 11.43 26.79 7.32 0.00 7.69 5.71 12.00 8.00 5.26 6.56 2.38 5.17 0.00 2.04 5.00 4.55 4.17 5.71 5.10 K jcn_only_AA Hsc70Cb chr3L + chr3L_14030237_14030580 chr3L_14030237_14030577 chr3L_14030227_14030236;chr3L_14030581_14030850 100.00 100.00 100.00 98.18 100.00 97.37 98.84 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 99.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 97.78 100.00 100.00 98.21 100.00 100.00 100.00 100.00 97.87 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 98.61 99.12 100.00 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette Caki chr3R - chr3R_17613825_17615170 chr3R_17613825_17614595;chr3R_17614650_17615170 chr3R_17614596_17614649 chr3R_17613705_17613824;chr3R_17615171_17615309 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.63 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.60 0.00 0.00 0.00 0.66 0.00 0.75 0.51 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG14464,noncoding_4432 chr2R + chr2R_716999_717069 chr2R_716999_717051 chr2R_716788_716998;chr2R_717070_717439 98.14 98.41 97.85 100.00 96.88 97.30 97.32 95.14 98.48 97.22 100.00 98.31 98.78 96.59 96.97 97.96 100.00 97.47 97.41 98.14 96.36 91.67 98.04 100.00 100.00 97.30 100.00 97.44 92.86 97.37 99.11 96.08 100.00 100.00 100.00 100.00 93.10 100.00 97.87 100.00 97.78 99.27 98.96 100.00 98.04 95.96 95.45 97.67 98.95 96.08 98.15 100.00 100.00 97.26 98.15 98.67 99.05 99.40 K jcn_only_AD RpL15 chr3LHet + chr3LHet_2397992_2398049;chr3LHet_2397820_2398049 chr3LHet_2397859_2398049 chr3LHet_2398050_2398052;chr3LHet_2397802_2397819 0.00 0.00 0.00 0.00 NA NA 1.23 1.43 0.00 NA NA 0.00 0.00 0.00 NA 4.23 0.00 0.00 0.00 4.08 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 1.69 0.00 5.00 0.00 0.00 NA NA NA NA 0.00 6.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 2.70 0.00 2.63 K intron_retention vap,I_chrX_15897976_15899654,I_chrX_15898011_15899654,RI_chrX_15898427_15899654,I_chrX_15899237_15899654 chrX - chrX_15899510_15899654 chrX_15899509_15899510;chrX_15899654_15899655 chrX_15899353_15899509;chrX_15899655_15899705 43.75 NA 41.18 NA NA NA 44.83 77.27 45.71 NA 35.29 50.00 NA 46.15 30.77 58.62 71.43 NA 62.50 34.88 NA 16.67 31.58 37.50 20.00 37.50 46.15 NA 45.45 21.43 42.86 NA 54.55 60.71 NA 43.75 25.00 23.08 14.29 19.05 NA 50.00 45.45 25.00 NA NA NA NA 56.52 NA 50.00 22.22 NA NA 50.00 NA NA NA K alternative_donor Nipped-B,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_616057_617208;chr2R_616057_616283;chr2R_616057_616311 chr2R_616057_616318 chr2R_615957_616056;chr2R_617209_617308 8.33 0.00 6.67 9.52 33.33 10.00 7.32 20.83 10.26 25.00 0.00 8.57 14.29 4.35 0.00 9.09 0.00 0.00 13.33 10.53 0.00 14.29 0.00 0.00 20.00 8.33 11.76 0.00 16.67 14.29 0.00 NA 25.00 10.34 0.00 0.00 0.00 0.00 0.00 13.33 NA 6.67 0.00 14.29 NA 33.33 0.00 11.11 6.90 20.00 10.53 7.69 0.00 NA 8.33 0.00 0.00 25.00 K intron_retention CG32594 chrX + chrX_14926607_14927638 chrX_14926606_14926607;chrX_14927638_14927639 chrX_14925576_14926606;chrX_14927639_14928125 11.56 11.56 10.87 13.16 7.59 9.70 10.27 15.87 12.63 8.04 16.55 13.75 7.34 12.24 13.61 21.51 10.87 11.76 15.11 13.74 10.49 32.71 11.06 12.26 11.86 7.14 16.50 22.12 26.44 8.04 8.43 12.82 13.45 9.13 11.36 11.41 12.01 12.76 11.46 14.64 8.33 13.19 12.20 13.16 9.41 9.33 10.66 7.78 11.43 10.07 14.41 12.24 8.63 9.04 9.05 12.87 7.23 7.03 K jcn_only_AD CG1578,RI_chrX_11709573_11709680,I_chrX_11709573_11710263,RI_chrX_11709573_11710335,noncoding_23225,I_chrX_11710380_11710454 chrX - chrX_11709573_11709680;chrX_11709573_11710458;chrX_11709573_11710454;chrX_11709573_11710263 chrX_11709573_11710335 chrX_11709473_11709572;chrX_11710459_11710479 9.68 NA NA NA NA NA NA NA 12.50 NA NA 14.29 NA NA NA NA NA NA NA 4.76 NA NA 20.69 6.90 NA NA NA NA NA NA 14.29 NA NA NA NA NA 0.00 NA 4.76 13.33 NA 14.81 NA 3.70 NA NA NA 0.00 10.00 NA NA NA NA NA 9.68 NA 5.00 NA K alternative_acceptor Dp1 chr2R + chr2R_14299562_14300509 chr2R_14299562_14300506 chr2R_14299526_14299561;chr2R_14300510_14300582 75.00 NA NA 60.00 NA NA 75.00 75.00 90.00 NA NA 90.00 NA NA 50.00 61.54 55.56 NA 85.71 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA 68.18 NA NA NA NA NA NA NA NA NA K cassette lap,I_chr3R_3017854_3019314 chr3R + chr3R_3016519_3017110 chr3R_3016519_3016853;chr3R_3016887_3017110 chr3R_3016854_3016886 chr3R_3016443_3016518;chr3R_3017111_3017213 96.04 92.31 100.00 100.00 92.86 92.86 81.82 96.43 92.11 100.00 92.31 96.88 100.00 87.50 100.00 95.65 94.12 100.00 94.74 97.14 100.00 87.50 94.12 100.00 66.67 88.24 100.00 NA 87.50 NA 78.95 NA NA 97.06 100.00 60.00 100.00 100.00 100.00 95.00 85.71 95.24 93.75 93.75 NA 88.89 100.00 100.00 96.67 100.00 86.67 100.00 NA NA 100.00 88.89 100.00 100.00 K intron_retention I_chr2R_7165832_7165906,CG9062,I_chr2R_7171366_7171418 chr2R - chr2R_7171356_7171418 chr2R_7171355_7171356;chr2R_7171418_7171419 chr2R_7171266_7171355;chr2R_7171419_7171427 94.99 100.00 94.12 95.83 100.00 93.33 100.00 95.65 88.46 88.89 100.00 96.30 90.91 100.00 94.12 100.00 91.67 100.00 93.33 96.43 93.33 84.00 92.86 92.86 100.00 100.00 93.33 90.00 80.00 91.67 91.67 85.00 83.78 100.00 92.31 100.00 95.24 100.00 100.00 84.62 84.21 97.06 100.00 100.00 85.71 92.86 90.91 90.91 95.45 100.00 94.74 100.00 100.00 NA 100.00 100.00 100.00 86.67 K intron_retention CG9663,I_chr2L_3296691_3296743 chr2L - chr2L_3295940_3295993 chr2L_3295939_3295940;chr2L_3295993_3295994 chr2L_3294938_3295939;chr2L_3295994_3296485 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.31 0.57 0.93 0.00 0.00 1.36 5.81 0.00 0.00 0.00 0.00 0.00 2.04 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.63 0.00 2.94 0.00 2.86 0.00 0.00 0.00 K intron_retention Smr,I_chrX_12625852_12636351,REI_chrX_12635675_12636351 chrX - chrX_12635675_12636351 chrX_12635674_12635675;chrX_12636351_12636352 chrX_12635575_12635674;chrX_12636352_12636441 12.79 10.71 6.67 17.76 5.56 12.82 39.13 18.42 30.36 0.00 15.79 16.95 26.53 12.77 13.04 18.18 9.09 0.00 18.18 11.11 5.56 NA 17.24 NA NA 11.11 13.33 0.00 NA 5.56 10.26 NA 0.00 17.86 0.00 NA NA NA NA 5.71 NA 18.00 23.33 13.04 NA 0.00 NA 3.33 17.74 NA 26.32 0.00 NA NA 13.79 NA NA 0.00 K intron_retention Sin3A,E_chr2R_8463486_8464326,I_chr2R_8473578_8480185,RI_chr2R_8479951_8480233 chr2R - chr2R_8464005_8464072 chr2R_8464004_8464005;chr2R_8464072_8464073 chr2R_8462743_8464004;chr2R_8464073_8464498 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 1.12 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Rtnl1,I_chr2L_4994995_4995154,I_chr2L_4994995_5006383,RE_chr2L_4994997_5008180,I_chr2L_4999312_5000248,I_chr2L_4999386_4999670,I_chr2L_4999386_5000201,I_chr2L_5027222_5028118 chr2L - chr2L_4999386_5000248;chr2L_4999340_5000248 chr2L_4994995_5000248 chr2L_5000249_5000301 0.00 NA 0.00 0.00 NA 4.35 0.00 2.63 0.00 NA NA 0.00 NA NA 0.00 1.64 0.00 0.00 NA 0.00 0.00 NA NA NA NA 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA 4.35 NA NA NA NA 4.55 0.00 0.00 4.35 NA NA 0.00 NA 0.00 NA 0.00 0.00 K jcn_only_AD I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,I_chr3R_17183927_17184513,I_chr3R_17183927_17185306,RI_chr3R_17184319_17184513,I_chr3R_17184319_17185084,I_chr3R_17184319_17185284 chr3R - chr3R_17183927_17184082;chr3R_17183927_17185306;chr3R_17183927_17200781 chr3R_17183927_17184513 chr3R_17183827_17183926 1.41 0.00 2.00 4.05 2.44 2.04 3.33 1.59 0.83 0.00 0.00 5.21 0.00 10.53 2.78 3.33 0.00 0.00 0.00 0.00 0.00 16.39 2.22 1.41 1.41 0.00 3.17 0.00 4.62 4.05 3.97 4.48 1.85 1.37 2.04 1.49 0.00 1.45 2.83 0.86 7.81 1.65 0.00 0.00 0.81 0.96 3.30 1.89 0.00 0.00 0.95 5.26 0.00 0.00 3.70 0.00 1.04 0.00 K intron_retention CG33298 chr2L + chr2L_9495712_9496144 chr2L_9495711_9495712;chr2L_9496144_9496145 chr2L_9495472_9495711;chr2L_9496145_9496255 47.83 NA NA 45.45 NA NA 56.00 47.83 60.00 NA NA 56.25 NA 47.06 NA 42.31 NA NA 61.54 58.33 NA NA NA NA NA NA NA NA NA NA 61.54 NA NA 45.00 NA NA NA NA NA NA NA 37.04 38.46 NA NA NA NA NA 42.86 NA NA NA NA NA 50.00 NA NA NA K jcn_only_AD CG11148,RI_chr4_886921_887162 chr4 - chr4_886921_887601;chr4_886921_887162;chr4_886921_887595 chr4_886921_887591 chr4_886821_886920;chr4_887602_887637 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 K jcn_only_AA Cyp4p3 chr2R + chr2R_5130975_5131035 chr2R_5130975_5131026 chr2R_5130704_5130974;chr2R_5131036_5131244 96.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD klar,I_chr3L_454406_454553,I_chr3L_462559_472609,RI_chr3L_517594_539898 chr3L - chr3L_454406_462180 chr3L_454406_454553 chr3L_454306_454405;chr3L_462181_462558 0.60 0.36 1.97 0.00 0.92 0.62 0.79 0.20 0.62 0.00 0.77 0.74 0.38 0.00 0.36 0.54 0.78 1.05 0.97 0.17 1.13 1.42 0.00 0.87 0.86 1.04 0.30 1.56 0.00 0.47 0.87 0.00 1.23 1.04 0.79 1.27 0.60 0.74 0.22 0.43 0.86 0.70 0.45 0.00 1.08 0.62 0.00 0.00 0.35 0.38 0.23 0.55 0.59 0.92 0.00 0.00 0.42 1.37 K jcn_only_AD I_chr2R_17169674_17170491,CG10069,I_chr2R_17169897_17170495,I_chr2R_17170432_17170491,I_chr2R_17171765_17171886 chr2R + chr2R_17170432_17170491;chr2R_17170336_17170491;chr2R_17169885_17170491;chr2R_17169897_17170491 chr2R_17170070_17170491 chr2R_17170492_17170591;chr2R_17169869_17169884 11.32 18.03 9.52 4.67 10.94 10.84 26.32 24.74 9.09 4.88 21.67 11.97 13.85 17.19 16.09 7.22 15.38 14.04 11.86 10.71 13.89 10.29 12.38 7.22 10.94 13.16 8.43 9.43 4.55 6.94 12.94 4.76 11.71 12.40 13.64 20.00 9.30 15.29 8.33 6.35 12.12 9.63 18.87 6.67 13.43 7.04 9.68 7.53 12.32 15.09 15.69 10.26 10.94 8.82 11.39 15.09 8.62 11.32 K intron_retention Nf1 chr3R + chr3R_21819207_21820288 chr3R_21819206_21819207;chr3R_21820288_21820289 chr3R_21819041_21819206;chr3R_21820289_21820787 53.85 NA NA 87.50 NA NA 80.00 75.00 61.11 NA NA 66.67 NA 45.45 NA 53.85 NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA 36.36 NA NA 53.85 NA NA NA NA NA 75.00 NA 50.00 NA NA 41.67 46.67 NA 77.78 52.38 NA NA NA NA NA 87.50 NA NA NA K intron_retention Taspase1,CG5235 chr3L - chr3L_16080437_16080512 chr3L_16080436_16080437;chr3L_16080512_16080513 chr3L_16079451_16080436;chr3L_16080513_16080716 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 5.56 NA 5.88 6.98 17.95 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 4.00 1.22 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 2.27 0.00 0.00 2.38 0.00 0.00 0.00 0.00 2.44 2.94 0.00 K jcn_only_AA Adf1,CG15908_CG9410 chr2R + chr2R_2549942_2550129 chr2R_2549942_2550073 chr2R_2549797_2549941;chr2R_2550130_2550262 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 96.67 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA K alternative_donor CG17549,R_chr2L_19388305_19388473,RI_chr2L_19388570_19389427,I_chr2L_19388570_19389922 chr2L - chr2L_19388570_19389764;chr2L_19388570_19389926;chr2L_19388570_19389935 chr2L_19388570_19389427 chr2L_19388474_19388569;chr2L_19389936_19390022 31.66 NA NA 33.33 NA NA 50.00 60.00 25.00 33.33 NA 25.00 33.33 NA NA 33.33 NA NA NA 20.00 NA 30.00 NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA 20.00 NA NA NA NA 25.00 66.67 50.00 NA NA NA NA NA NA NA 20.00 NA K intron_retention CG34159,I_chr2L_10203661_10204065 chr2L - chr2L_10203033_10203383 chr2L_10203032_10203033;chr2L_10203383_10203384 chr2L_10202523_10203032;chr2L_10203384_10203639 1.85 1.48 2.61 3.25 0.00 2.00 1.85 3.07 2.42 0.00 4.81 2.23 0.00 0.00 2.13 6.19 0.00 0.00 1.80 1.56 3.30 7.39 4.48 2.72 1.59 2.27 6.14 8.70 4.12 1.68 1.61 1.60 0.00 1.68 2.15 3.49 1.94 1.45 1.89 3.39 0.95 0.99 0.00 2.44 2.38 0.70 2.11 0.00 1.05 2.46 3.81 1.43 1.71 1.24 2.84 1.85 0.96 0.54 K jcn_only_AD Hcf,I_chr4_384272_384649,I_chr4_391984_392875 chr4 + chr4_384266_384493 chr4_384272_384493 chr4_384494_384649;chr4_384172_384265 29.76 23.81 29.41 20.79 31.58 24.49 25.00 31.90 31.52 30.77 21.74 30.11 29.51 31.67 17.65 30.00 35.71 30.14 26.32 26.32 33.33 NA 31.15 16.67 43.24 33.80 21.67 48.15 31.25 31.25 23.21 27.27 33.33 27.72 44.83 34.21 26.79 24.24 26.42 19.70 NA 29.03 20.93 18.03 42.86 32.00 20.00 36.54 23.62 25.00 30.23 28.57 40.74 NA 21.25 51.72 33.33 31.25 K alternative_acceptor Bin1,I_chr3R_12012377_12012433 chr3R - chr3R_12012361_12012433 chr3R_12012377_12012433 chr3R_12012434_12012533;chr3R_12012277_12012360 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 1.40 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG2316,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_210055,I_chr4_209875_210628,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_211303,RI_chr4_210688_211927,I_chr4_210688_213991,I_chr4_210688_214019,I_chr4_210688_214049,RI_chr4_210688_214450 chr4 - chr4_208796_208855 chr4_208795_208796;chr4_208855_208856 chr4_208696_208795;chr4_208856_208995 2.38 2.38 6.12 1.41 0.00 0.00 1.94 2.78 1.53 0.00 2.70 4.30 0.00 5.36 3.64 10.26 2.13 2.78 4.48 6.49 0.00 0.00 0.00 5.71 0.00 0.00 8.51 8.70 NA 5.56 5.45 NA 5.00 2.68 3.45 NA 0.00 0.00 0.00 1.72 0.00 4.60 0.00 3.85 NA 0.00 0.00 4.55 5.41 0.00 4.41 10.81 0.00 0.00 2.90 5.00 0.00 0.00 K intron_retention RpS19a chrX + chrX_16531983_16532265 chrX_16531982_16531983;chrX_16532265_16532266 chrX_16531912_16531982;chrX_16532266_16532336 43.10 38.30 24.00 20.45 22.97 24.62 76.54 24.14 26.63 61.11 24.00 25.21 30.43 32.14 26.21 20.78 27.38 26.67 24.14 26.09 20.29 66.67 86.36 80.00 93.62 54.03 88.89 85.19 74.34 60.00 38.95 43.10 34.48 23.26 50.00 81.82 50.00 85.71 76.47 66.10 88.42 27.37 22.50 59.38 40.96 67.61 66.67 62.92 31.58 66.67 92.00 76.47 34.55 82.35 32.93 72.73 46.88 39.13 K intron_retention Cas chr2L - chr2L_16822436_16822491 chr2L_16822435_16822436;chr2L_16822491_16822492 chr2L_16822135_16822435;chr2L_16822492_16822648 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K jcn_only_AA CG31159 chr3R + chr3R_18441463_18441528 chr3R_18441463_18441523 chr3R_18440964_18441462;chr3R_18441529_18441737 78.26 NA NA 73.08 NA NA NA 78.57 82.50 NA NA NA NA NA NA 51.72 NA NA NA 86.21 NA 77.27 NA NA NA NA 86.36 NA NA NA 51.52 NA 85.00 78.26 NA NA NA NA NA 72.97 NA 85.71 NA NA NA NA NA NA 76.47 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG3321,RI_chr3R_10154615_10155360 chr3R + chr3R_10152850_10152974;chr3R_10152811_10152974;chr3R_10152911_10152974 chr3R_10152906_10152974 chr3R_10152975_10153473;chr3R_10152803_10152810 10.35 15.10 6.76 10.54 6.74 3.17 19.67 11.43 7.47 13.89 7.52 9.16 9.09 8.41 10.35 6.92 6.95 9.57 8.21 6.56 7.41 24.44 16.78 8.02 7.00 12.04 19.17 15.07 25.27 27.50 7.09 10.23 13.43 4.77 23.19 13.95 13.51 9.58 9.90 29.21 17.46 6.55 5.33 19.65 8.04 23.01 12.50 13.40 3.48 9.62 15.38 17.20 20.65 24.66 5.26 10.62 10.00 21.64 K jcn_only_AA CG30372,coilin,I_chr2R_4012973_4013037,RI_chr2R_4012976_4013037 chr2R - chr2R_4012976_4013037;chr2R_4012979_4013037 chr2R_4012973_4013037 chr2R_4013038_4013137;chr2R_4012876_4012972 0.00 3.12 3.85 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.63 4.35 NA 0.00 4.88 0.00 0.00 0.00 2.44 0.00 NA 0.00 0.00 0.00 8.33 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA 2.94 0.00 2.38 2.44 NA 0.00 0.00 3.33 0.00 NA NA 0.00 0.00 4.17 0.00 K intron_retention Pkc98E chr3R + chr3R_24867963_24870088 chr3R_24867962_24867963;chr3R_24870088_24870089 chr3R_24867889_24867962;chr3R_24870089_24870159 18.52 19.05 25.00 22.73 22.22 15.00 35.00 19.35 20.00 14.29 21.05 28.26 31.58 30.43 33.33 27.27 17.65 15.00 12.50 45.45 26.67 7.35 12.20 17.50 18.52 16.00 10.00 10.53 12.90 17.65 10.17 NA 8.70 14.29 17.24 12.20 12.50 25.00 13.16 20.00 25.00 11.43 20.00 6.90 NA 19.05 11.11 25.93 22.58 NA 14.29 11.11 22.22 NA 23.08 28.57 NA NA K jcn_only_AD fh,RI_chrX_9042659_9042723 chrX - chrX_9042659_9042727 chrX_9042659_9042723 chrX_9042559_9042658;chrX_9042728_9042823 3.85 3.23 3.33 7.50 5.56 6.38 0.00 7.50 5.00 0.00 0.00 0.00 4.76 5.88 3.92 6.25 3.70 0.00 4.35 3.85 2.70 0.00 6.56 3.70 5.66 6.06 1.59 4.08 2.27 4.17 4.55 2.78 0.00 6.82 3.03 2.44 4.35 4.48 4.71 5.56 4.44 3.75 4.17 3.92 6.12 4.62 1.52 0.00 0.00 0.00 4.88 0.00 3.12 9.26 2.13 1.54 1.45 0.00 K intron_retention CG4896,REI_chr2L_1179197_1179859,I_chr2L_1191535_1191648 chr2L + chr2L_1180124_1180212 chr2L_1180123_1180124;chr2L_1180212_1180213 chr2L_1179997_1180123;chr2L_1180213_1180449 36.28 37.50 55.56 33.33 39.13 23.53 45.45 36.67 31.82 56.25 31.25 31.43 23.53 36.84 31.25 37.93 29.41 36.84 25.93 34.88 50.00 62.50 35.90 29.03 45.45 50.00 34.62 NA 48.15 20.83 55.56 42.86 25.00 27.59 42.11 52.38 42.11 41.67 35.42 47.06 53.85 33.96 29.41 34.78 35.71 33.33 33.33 43.14 40.48 39.29 31.25 50.00 26.67 35.00 39.29 33.33 30.00 45.16 K alternative_last_exon rdgB chrX + chrX_13668012_13668718;chrX_13668012_13670708 chrX_13668012_13669465 chrX_13670709_13670860 chrX_13669466_13670309 chrX_13667839_13668011 33.33 28.57 50.00 50.00 NA NA 42.86 50.00 41.67 NA NA 20.00 100.00 50.00 33.33 50.00 33.33 33.33 NA 12.50 50.00 4.35 33.33 NA 50.00 NA 33.33 NA NA 10.00 33.33 NA 33.33 37.50 50.00 22.22 28.57 10.00 7.69 40.00 NA 42.86 50.00 28.57 NA NA NA 14.29 30.00 NA 30.00 NA 12.50 NA NA 20.00 NA NA K intron_retention CG6175 chr3L - chr3L_11282755_11284137 chr3L_11282754_11282755;chr3L_11284137_11284138 chr3L_11281774_11282754;chr3L_11284138_11284204 43.56 NA NA 63.64 NA NA NA NA 45.45 NA NA 53.85 NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA 0.00 53.85 NA 33.33 NA NA NA NA NA NA NA K intron_retention Khc,EI_chr2R_12157759_12157824 chr2R - chr2R_12157759_12158843 chr2R_12157758_12157759;chr2R_12158843_12158844 chr2R_12157659_12157758;chr2R_12158844_12159487 0.99 0.89 0.99 2.91 0.00 2.94 0.00 0.00 0.80 2.20 0.00 0.99 1.05 0.00 0.00 2.31 0.95 1.09 1.80 0.46 0.00 3.38 1.69 1.79 0.00 1.50 3.55 3.03 1.89 2.10 0.91 0.00 1.67 0.58 2.33 0.00 2.09 1.72 0.65 0.97 3.92 1.58 0.00 0.65 0.87 0.00 0.00 0.00 1.08 0.88 0.79 2.41 3.28 0.00 1.43 1.00 0.00 1.54 K jcn_only_AD CrebB-17A,I_chrX_18261213_18269281,I_chrX_18265640_18266060,I_chrX_18265982_18266063 chrX + chrX_18267235_18267319 chrX_18267247_18267319 chrX_18267320_18267488;chrX_18267067_18267234 73.33 67.80 76.38 72.92 73.27 70.53 73.33 72.39 71.67 70.19 75.83 73.85 69.23 77.14 75.36 75.00 67.03 74.53 79.31 75.23 76.15 77.89 76.14 70.34 81.10 73.12 78.36 82.57 70.43 60.58 75.00 68.49 64.57 72.39 77.88 73.64 75.09 67.52 75.58 69.39 61.40 74.76 73.17 68.42 66.41 66.13 79.53 80.77 70.83 68.29 74.40 80.65 78.95 68.87 79.72 77.00 72.80 60.82 K jcn_only_AD Syn1,I_chr3L_21753613_21754057 chr3L - chr3L_21740398_21740607 chr3L_21740398_21740601 chr3L_21740203_21740397;chr3L_21740608_21740900 59.31 34.78 53.57 NA NA 45.83 NA NA 57.14 54.55 NA NA NA NA NA NA NA NA NA 64.71 NA NA 51.61 59.09 NA NA NA NA 75.00 NA NA 65.00 NA 52.17 46.15 62.00 46.88 58.93 57.89 72.55 65.38 58.06 NA 70.59 51.52 56.25 65.71 59.52 61.29 NA 65.85 61.90 63.83 67.86 NA 64.29 41.38 60.47 K intron_retention CG9286,Dip-B chr3R + chr3R_9606899_9606959 chr3R_9606898_9606899;chr3R_9606959_9606960 chr3R_9606831_9606898;chr3R_9606960_9607027 0.00 0.00 0.00 0.00 NA 0.00 3.12 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 K intron_retention hpo chr2R - chr2R_15381800_15382186 chr2R_15381799_15381800;chr2R_15382186_15382187 chr2R_15381501_15381799;chr2R_15382187_15382908 100.00 100.00 100.00 100.00 100.00 92.86 97.30 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 NA 100.00 92.31 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG31716,I_chr2L_10397163_10398034,RI_chr2L_10397195_10398034,I_chr2L_10397648_10398034 chr2L + chr2L_10396850_10396912 chr2L_10396849_10396850;chr2L_10396912_10396913 chr2L_10396810_10396849;chr2L_10396913_10396921 100.00 100.00 100.00 98.28 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 96.00 100.00 NA NA 100.00 100.00 100.00 100.00 K jcn_only_AA CG10221,CG10219 chr3R - chr3R_19580925_19580995 chr3R_19580936_19580995 chr3R_19580996_19581200;chr3R_19580343_19580924 100.00 100.00 98.31 99.06 100.00 100.00 100.00 98.18 99.25 95.83 100.00 99.05 100.00 100.00 100.00 99.16 97.78 97.96 98.75 97.50 100.00 100.00 100.00 100.00 96.77 98.41 96.61 100.00 100.00 96.67 96.34 100.00 100.00 100.00 100.00 100.00 98.28 93.94 100.00 98.33 97.06 99.12 100.00 100.00 100.00 98.80 98.41 100.00 100.00 100.00 98.31 100.00 98.00 98.11 98.53 100.00 100.00 100.00 K intron_retention dco,RI_chr3R_26883647_26884261,RI_chr3R_26883651_26886096,I_chr3R_26884350_26884670,I_chr3R_26884350_26886671,I_chr3R_26884350_26886791,RI_chr3R_26884365_26886096,I_chr3R_26884365_26886798 chr3R - chr3R_26884350_26886096 chr3R_26884349_26884350;chr3R_26886096_26886097 chr3R_26884265_26884349;chr3R_26886097_26886186 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.53 0.00 0.00 0.75 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 1.59 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr2L_20738976_20749527,ns4 chr2L + chr2L_20754366_20754430 chr2L_20754365_20754366;chr2L_20754430_20754431 chr2L_20753174_20754365;chr2L_20754431_20754682 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention gus,I_chr2R_1009158_1009345,RI_chr2R_1009158_1011540,I_chr2R_1009346_1015730 chr2R - chr2R_1009158_1015730 chr2R_1009157_1009158;chr2R_1015730_1015731 chr2R_1009058_1009157;chr2R_1015731_1015742 0.00 0.00 0.00 6.25 NA 0.00 11.54 0.00 6.25 NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA NA 7.69 NA 0.00 NA NA NA NA 0.00 NA NA 3.70 NA NA NA NA NA 0.00 NA 7.41 0.00 NA NA NA NA NA 0.00 NA 12.50 NA NA NA 0.00 NA NA 0.00 K alternative_donor CG8552,I_chr2L_8140779_8156516 chr2L - chr2L_8134513_8134577 chr2L_8134513_8134572 chr2L_8134264_8134512;chr2L_8134578_8134773 97.30 100.00 100.00 98.00 92.31 92.31 97.56 95.00 98.44 92.86 100.00 97.30 95.00 100.00 95.24 94.87 94.44 100.00 100.00 97.73 100.00 78.38 100.00 93.75 100.00 100.00 100.00 93.10 95.24 96.77 95.00 90.91 97.67 100.00 92.86 100.00 95.83 94.74 93.75 95.45 100.00 95.00 100.00 96.30 100.00 97.37 91.43 87.50 97.56 97.14 97.37 94.74 100.00 95.83 100.00 96.30 100.00 97.92 K intron_retention CG4658,I_chr2L_9958819_9958939 chr2L + chr2L_9959112_9959549 chr2L_9959111_9959112;chr2L_9959549_9959550 chr2L_9958940_9959111;chr2L_9959550_9959896 10.00 10.42 5.41 20.75 13.04 6.38 21.05 14.00 10.00 0.00 9.09 4.05 8.33 5.71 13.16 11.76 15.38 4.44 13.33 4.88 12.50 12.00 12.33 12.28 15.38 7.50 12.20 22.22 4.55 9.38 8.00 5.26 4.92 12.24 13.79 10.87 10.71 11.11 9.84 6.82 1.85 6.25 13.04 11.43 3.03 7.14 12.68 3.57 4.82 10.00 11.11 7.32 8.11 6.94 8.51 12.00 10.91 0.00 K jcn_only_AD CG33170,RI_chr3L_22859073_22860499,I_chr3L_22859135_22860499 chr3L + chr3L_22859073_22860499;chr3L_22860419_22860499;chr3L_22859135_22860499 chr3L_22859061_22860499 chr3L_22860500_22860559 89.12 91.57 90.00 89.12 93.02 87.50 89.01 85.71 86.75 78.00 92.86 89.12 61.90 86.05 92.78 91.82 91.78 92.31 85.06 89.93 86.79 90.74 92.16 91.96 89.80 87.50 84.21 84.62 90.59 94.12 82.98 88.33 86.73 85.71 92.19 79.41 91.43 78.95 94.83 95.15 88.95 90.56 88.41 93.62 88.89 91.16 85.86 87.32 93.25 82.76 82.35 84.78 89.29 88.89 95.19 87.86 90.15 93.61 K alternative_acceptor DCAP,RI_chr2R_6183553_6192101,I_chr2R_6188094_6192101 chr2R + chr2R_6188094_6192128 chr2R_6188094_6192101 chr2R_6188087_6188093;chr2R_6192129_6192201 23.93 18.18 NA NA NA NA 46.15 26.32 25.93 NA NA 17.65 NA NA 26.67 14.29 30.00 NA 17.65 24.32 NA 40.00 33.33 36.36 NA NA 60.00 NA 20.00 23.08 16.67 NA 23.53 16.67 NA NA 17.65 NA 15.38 22.73 NA 33.33 25.00 NA 36.36 29.41 13.33 30.00 33.33 25.00 NA NA 22.22 14.29 NA NA 20.00 13.89 K alternative_acceptor UBL3 chrX - chrX_15746577_15747074 chrX_15746773_15747074 chrX_15747075_15747178;chrX_15745618_15746576 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 N alternative_donor CG12703 chrX + chrX_19645171_19650462 chrX_19645580_19650462 chrX_19650463_19650575;chrX_19644833_19645170 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette cv-2 chr2R - chr2R_17251293_17266009 chr2R_17251293_17254167;chr2R_17254471_17266009 chr2R_17254168_17254470 chr2R_17251204_17251292;chr2R_17266010_17266907 95.45 100.00 100.00 100.00 100.00 88.89 94.44 87.50 93.75 96.00 100.00 92.31 83.33 87.50 87.50 87.50 100.00 85.71 100.00 94.44 85.71 94.51 98.04 97.22 96.67 90.00 100.00 96.39 81.67 97.22 84.62 94.74 89.47 100.00 100.00 94.29 97.14 95.83 90.00 97.44 100.00 100.00 100.00 91.30 95.45 93.33 95.00 94.74 100.00 100.00 96.88 95.24 100.00 100.00 90.00 93.75 100.00 92.86 K alternative_donor tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5960163;chr3R_5959310_5960101;chr3R_5959310_5960041;chr3R_5959310_5959789;chr3R_5959310_5960049;chr3R_5959310_5960182;chr3R_5959310_5960026;chr3R_5959310_5960158 chr3R_5959310_5959679 chr3R_5958937_5959309;chr3R_5960183_5960224 22.22 28.57 30.00 16.00 25.00 20.00 17.39 22.73 24.14 40.00 28.57 18.18 33.33 25.00 21.43 13.33 20.00 20.00 17.65 21.74 12.50 25.00 25.00 25.00 33.33 22.22 20.00 25.00 33.33 22.22 23.08 50.00 33.33 25.93 25.00 33.33 25.00 0.00 33.33 16.67 0.00 20.83 18.18 22.22 0.00 25.00 0.00 23.81 21.88 20.00 20.00 28.57 16.67 33.33 18.75 20.00 0.00 30.77 K intron_retention RhoGAP68F,RI_chr3L_12133229_12134100 chr3L + chr3L_12134577_12134633 chr3L_12134576_12134577;chr3L_12134633_12134634 chr3L_12134544_12134576;chr3L_12134634_12134829 0.00 0.00 0.00 6.52 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 4.17 4.88 0.00 0.00 0.00 0.00 7.41 NA 30.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 6.67 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 K jcn_only_AD Cyp9f2,RI_chr3R_8230559_8231431 chr3R - chr3R_8230612_8231431 chr3R_8230612_8231424 chr3R_8230460_8230611;chr3R_8231432_8231531 100.00 NA 100.00 NA NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA NA NA NA NA NA NA NA 95.45 NA NA 100.00 NA NA 100.00 NA NA NA NA 96.88 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention bbx chrX + chrX_21241902_21242009 chrX_21241901_21241902;chrX_21242009_21242010 chrX_21241820_21241901;chrX_21242010_21244119 0.00 0.00 0.00 4.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.48 1.64 0.00 0.00 0.00 0.00 2.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention Pvf2 chr2L - chr2L_7083729_7083829 chr2L_7083728_7083729;chr2L_7083829_7083830 chr2L_7083186_7083728 40.00 NA NA 100.00 NA NA 67.86 NA 41.18 30.77 NA 26.67 NA 40.00 NA 45.45 NA NA NA NA NA 19.35 NA NA NA NA NA 0.00 30.77 NA NA NA NA 100.00 NA 61.11 NA NA NA 26.32 42.31 NA NA 28.57 NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG2811,I_chr2R_20828961_20829772 chr2R - chr2R_20827527_20827594 chr2R_20827537_20827594 chr2R_20827595_20827646;chr2R_20827429_20827526 100.00 98.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 97.62 100.00 100.00 100.00 94.87 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.88 K alternative_donor pes chr2L - chr2L_7991620_7993840;chr2L_7991620_7994134 chr2L_7991620_7994109 chr2L_7991358_7991619;chr2L_7994135_7994182 4.62 4.08 6.11 8.82 6.98 5.08 2.65 3.41 4.36 4.62 2.86 8.73 2.88 4.92 6.62 3.69 6.60 7.75 5.04 5.40 4.39 4.88 5.10 5.22 8.47 4.10 5.38 9.20 5.19 3.95 6.17 5.36 1.35 3.14 3.57 2.53 7.83 5.88 8.74 3.48 1.75 6.36 2.75 2.83 11.59 1.39 4.55 1.37 3.16 5.26 4.38 6.96 3.33 3.70 6.45 3.33 4.17 0.00 K jcn_only_AD l(2)tid chr2R + chr2R_19595998_19596157 chr2R_19596011_19596157 chr2R_19596158_19596758;chr2R_19594625_19595997 57.78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 55.56 NA NA NA NA NA NA NA NA 61.54 NA NA NA NA NA 54.55 68.18 NA 52.17 NA NA 51.85 60.00 52.38 NA NA NA NA NA 60.00 30.00 NA NA 61.54 71.43 K intron_retention Tsp96F chr3R - chr3R_21702449_21706737 chr3R_21702448_21702449;chr3R_21706737_21706738 chr3R_21702254_21702448;chr3R_21706738_21707010 20.00 20.00 NA 8.33 NA NA 23.53 20.00 19.35 NA NA 30.43 41.67 NA NA 23.08 NA 7.69 16.67 41.67 NA NA NA NA NA 38.46 15.79 NA NA NA 25.00 NA NA 15.38 NA NA 13.33 NA NA 15.38 NA 21.43 NA 36.36 NA NA NA 30.77 20.00 NA 15.38 NA NA NA 17.65 NA NA NA K jcn_only_AA msn,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2563960_2564396 chr3L_2563978_2564396 chr3L_2564397_2564692;chr3L_2563818_2563959 0.00 0.23 0.24 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.34 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.35 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.29 0.00 0.51 0.00 0.65 0.29 0.25 0.29 0.00 0.00 0.18 0.00 0.00 0.39 0.55 0.23 0.32 0.00 0.29 0.00 0.00 0.21 0.00 0.36 0.00 0.00 0.00 0.00 0.00 K intron_retention Moe,I_chrX_8774434_8775874,I_chrX_8774434_8791759 chrX - chrX_8774434_8788091 chrX_8774433_8774434;chrX_8788091_8788092 chrX_8774334_8774433;chrX_8788092_8788228 14.29 NA NA 14.29 NA NA 22.22 17.39 26.47 NA NA 12.00 13.04 NA NA 10.53 23.08 NA NA 20.00 NA NA NA 14.29 NA NA NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA NA 13.04 NA NA NA NA NA NA 13.79 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG11790,CG11791 chr3R + chr3R_20876091_20876902;chr3R_20875669_20876902 chr3R_20876340_20876902 chr3R_20876903_20877278;chr3R_20875600_20875668 67.74 58.62 72.22 71.28 42.86 55.56 67.74 76.53 72.17 62.22 81.40 80.85 56.06 75.47 73.17 76.60 71.79 52.00 69.35 76.40 84.09 70.49 64.29 68.18 NA NA 82.98 68.42 62.86 70.21 75.44 58.06 73.53 72.94 76.32 50.00 55.93 73.08 54.35 50.52 46.15 65.88 67.86 59.42 62.32 61.33 60.49 50.00 78.65 73.20 62.30 67.57 53.23 73.47 58.49 64.38 62.75 34.34 K jcn_only_AD l(1)G0193 chrX - chrX_7837261_7839928;chrX_7837261_7837749 chrX_7837261_7837716 chrX_7836542_7837260 34.60 32.87 36.50 30.06 32.62 35.67 39.95 39.20 35.03 29.94 44.44 34.91 35.83 34.60 32.61 41.53 32.67 34.87 32.11 37.62 33.57 32.10 29.96 27.55 31.23 36.74 30.90 37.33 29.81 29.43 44.36 40.44 26.25 36.31 29.44 29.76 30.11 25.19 24.61 34.90 43.23 36.52 38.76 38.79 35.19 34.78 24.88 51.34 37.04 23.24 35.28 33.09 24.61 32.26 38.76 31.11 21.35 39.81 K intron_retention bdg,I_chr2R_11824086_11824186,CEI_chr2R_11826763_11827279 chr2R - chr2R_11811515_11811583 chr2R_11811514_11811515;chr2R_11811583_11811584 chr2R_11811279_11811514;chr2R_11811584_11812368 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention APC4,I_chrX_8978433_8978480,RI_chrX_8980352_8980400 chrX + chrX_8977199_8977273 chrX_8977198_8977199;chrX_8977273_8977274 chrX_8977053_8977198;chrX_8977274_8977516 9.19 NA NA NA NA NA NA NA 12.50 NA NA 5.88 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907784_9908424;chr2L_9907848_9908424 chr2L_9908142_9908424 chr2L_9908425_9908505;chr2L_9907756_9907783 12.16 10.87 17.14 7.69 7.69 19.05 12.24 8.86 12.61 21.43 12.00 12.16 13.33 14.89 11.11 12.68 8.16 9.30 7.02 12.09 10.71 22.50 12.66 10.20 14.63 12.20 11.11 11.54 13.16 22.41 11.43 12.00 23.53 8.24 16.67 10.77 11.54 9.30 10.64 13.51 19.23 11.58 14.81 6.25 13.64 10.00 14.29 28.57 13.33 11.11 12.68 12.82 6.25 13.64 10.17 14.29 6.00 13.16 K jcn_only_AD CkIIbeta,I_chrX_11686847_11687475,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11687025_11687475;chrX_11686979_11687475;chrX_11687313_11687475 chrX_11686948_11687475 chrX_11687476_11687551;chrX_11686929_11686947 2.63 8.33 6.00 6.76 2.63 2.44 5.00 1.32 3.81 NA 7.14 1.28 2.44 7.89 2.08 1.32 7.32 10.00 7.02 5.88 12.90 0.00 0.00 0.00 0.00 3.12 0.00 NA 0.00 0.00 3.28 5.00 2.56 6.85 0.00 0.00 5.71 3.45 0.00 2.13 0.00 6.74 11.11 4.55 0.00 0.00 2.94 0.00 5.21 0.00 0.00 0.00 2.94 0.00 6.67 5.71 0.00 4.88 K jcn_only_AD S chr2L - chr2L_1062214_1077651 chr2L_1062214_1076834 chr2L_1061234_1062213;chr2L_1077652_1077815 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 96.88 NA 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA 97.67 100.00 100.00 NA 100.00 100.00 NA 96.67 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 NA 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 K alternative_donor E(bx),I_chr3L_246324_246699 chr3L - chr3L_246324_246885;chr3L_246324_246408;chr3L_246324_246794;chr3L_246324_246382;chr3L_246324_246388;chr3L_246324_246427 chr3L_246324_246438 chr3L_246224_246323;chr3L_246886_246901 2.06 4.76 4.00 2.56 5.26 4.17 3.64 2.08 3.08 0.00 0.00 0.00 0.00 3.85 3.70 9.43 0.00 4.55 6.45 0.00 0.00 0.00 3.33 0.00 0.00 4.17 4.00 6.67 12.50 5.56 3.12 33.33 6.25 1.89 0.00 5.56 0.00 0.00 0.00 3.70 0.00 2.04 3.57 0.00 NA 0.00 0.00 0.00 3.39 25.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RanBPM chr2R + chr2R_6321618_6321675 chr2R_6321617_6321618;chr2R_6321675_6321676 chr2R_6321466_6321617;chr2R_6321676_6321878 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 1.41 0.00 1.10 5.71 2.50 1.12 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ps,I_chr3R_5243723_5265067,I_chr3R_5243723_5270765,I_chr3R_5245770_5265067,I_chr3R_5245770_5269732,I_chr3R_5258562_5264836,I_chr3R_5262841_5265067,RI_chr3R_5262841_5266402,I_chr3R_5265428_5266402,I_chr3R_5265428_5269732,I_chr3R_5265428_5270765,CG16777,I_chr3R_5269733_5270765 chr3R + chr3R_5258562_5270765 chr3R_5258561_5258562;chr3R_5270765_5270766 chr3R_5258462_5258561;chr3R_5270766_5270860 4.17 6.90 2.70 3.08 5.56 9.38 3.61 3.39 2.25 NA 2.56 7.94 12.00 4.17 2.22 2.70 0.00 13.33 0.00 7.41 0.00 8.57 7.14 9.09 6.67 4.88 3.77 14.29 0.00 3.23 6.25 NA 0.00 8.77 6.67 5.66 6.67 0.00 0.00 3.12 NA 7.04 2.70 4.76 NA 9.09 5.56 0.00 2.99 NA 3.64 5.88 0.00 NA 4.76 0.00 0.00 10.53 N alternative_donor bel,I_chr3R_4484110_4485922 chr3R - chr3R_4481629_4481708 chr3R_4481629_4481699 chr3R_4480932_4481628;chr3R_4481709_4483565 16.13 15.27 23.61 19.61 15.79 19.05 16.07 19.48 14.29 14.89 18.03 13.94 16.28 17.78 12.04 28.57 22.37 24.53 31.03 16.18 22.58 15.75 14.00 15.90 12.03 13.64 16.52 14.17 17.91 14.91 18.18 17.72 14.23 17.50 15.58 19.66 20.54 17.06 14.57 14.60 14.69 17.53 20.00 16.13 13.03 16.55 14.20 13.76 16.67 14.18 18.18 16.28 14.11 13.60 16.50 14.84 14.72 15.15 K jcn_only_AD lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3955586_3957375;chr2R_3955788_3957375;chr2R_3955517_3957375 chr2R_3955872_3957375 chr2R_3957376_3957784;chr2R_3955509_3955516 1.59 2.56 2.47 0.89 1.28 0.00 4.29 1.05 1.49 4.76 0.00 3.10 0.00 0.00 1.85 1.47 1.25 0.00 2.74 2.13 1.56 0.00 NA NA NA 2.63 NA NA 3.70 0.00 6.32 0.00 1.33 1.59 8.00 NA 13.33 NA NA 8.96 4.00 2.81 0.00 13.64 1.56 NA NA 2.86 0.00 NA NA NA 5.26 NA 0.00 NA NA 7.69 K alternative_acceptor RI_chrX_8468338_8469380,I_chrX_8468338_8477573,CG12065,CE_chrX_8469528_8477573 chrX + chrX_8468441_8469380;chrX_8468441_8469383 chrX_8468441_8469386 chrX_8468351_8468440;chrX_8469387_8469480 10.81 12.20 18.60 3.64 10.53 13.16 25.68 10.81 13.16 21.21 2.94 12.50 20.51 11.90 9.76 7.95 4.65 6.45 8.51 5.33 10.81 8.41 14.29 10.94 6.90 10.00 9.68 15.38 11.43 12.96 11.86 14.81 15.79 12.68 9.76 9.09 8.33 4.76 9.76 13.46 6.67 12.79 2.44 8.33 11.54 6.25 7.94 7.50 11.11 10.20 11.29 11.32 11.11 8.33 12.00 8.51 10.94 13.04 K cassette CG40178,I_chr3LHet_1194286_1226423,I_chr3LHet_1281030_1306994,RI_chr3LHet_1390877_1390952 chr3LHet - chr3LHet_1360850_1396241 chr3LHet_1360850_1390759;chr3LHet_1390877_1396241 chr3LHet_1390760_1390876 chr3LHet_1360789_1360849;chr3LHet_1396242_1396267 56.25 NA NA 33.33 NA NA NA 40.00 50.00 NA NA 50.00 NA 50.00 NA 63.64 NA NA NA 72.73 NA NA 71.43 NA NA NA NA NA NA NA NA NA NA 73.33 NA NA NA NA NA NA NA 55.56 NA NA NA 62.50 NA NA 56.25 100.00 44.44 NA NA NA NA 87.50 NA NA K alternative_donor CG17082,I_chr2R_632143_635290,R_chr2R_642176_644740,I_chr2R_644094_644145,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_632083_636726;chr2R_631907_636726;chr2R_631971_636726;chr2R_632143_636726 chr2R_631984_636726 chr2R_636727_636891;chr2R_631902_631906 0.00 NA NA 7.14 NA NA 6.25 8.33 5.88 NA NA 0.00 20.00 0.00 NA 6.25 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor l(1)G0232 chrX - chrX_9523021_9523085 chrX_9523025_9523085 chrX_9523086_9523365;chrX_9522870_9523020 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 K alternative_donor CG2950,I_chr2L_4844647_4845086,I_chr2L_4844952_4845086 chr2L - chr2L_4846217_4847238 chr2L_4846217_4847163 chr2L_4845642_4846216;chr2L_4847239_4847245 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 NA NA NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention I_chrX_4000307_4003527,CG4857 chrX + chrX_4011270_4011996 chrX_4011269_4011270;chrX_4011996_4011997 chrX_4011093_4011269;chrX_4011997_4012308 66.67 64.29 63.64 72.73 NA 81.82 88.24 51.61 61.29 NA 60.00 60.71 78.57 61.54 64.29 80.00 81.25 57.14 75.00 64.00 NA 63.64 68.42 72.73 NA 45.45 74.07 NA NA 61.11 83.33 NA 57.14 66.67 80.00 52.94 69.23 66.67 52.38 71.43 NA 70.37 73.33 61.11 NA 61.54 NA 88.89 74.07 71.43 50.00 58.33 NA 88.89 85.71 66.67 NA NA K jcn_only_AD Oscp,I_chr3R_11091413_11092154 chr3R + chr3R_11091413_11092154 chr3R_11092093_11092154 chr3R_11092155_11092254;chr3R_11091313_11091412 100.00 100.00 99.84 99.74 100.00 99.80 99.84 99.66 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.85 100.00 99.46 100.00 99.91 99.79 100.00 100.00 100.00 99.76 99.67 99.73 100.00 100.00 100.00 100.00 100.00 99.77 100.00 100.00 100.00 100.00 99.84 100.00 100.00 100.00 99.74 100.00 99.83 99.82 99.85 100.00 99.64 100.00 99.82 99.86 100.00 100.00 100.00 99.69 100.00 100.00 100.00 K alternative_donor CG7458 chr3L + chr3L_21948331_21948413 chr3L_21948354_21948413 chr3L_21948414_21948649;chr3L_21948244_21948330 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA 88.89 NA 100.00 NA NA 87.50 NA 100.00 K jcn_only_AD CG17698 chr3L + chr3L_23741393_23741523;chr3L_23741474_23741523 chr3L_23739645_23741523 chr3L_23741524_23741816 0.00 NA 0.00 8.93 NA 4.17 4.26 1.32 3.30 NA NA 0.00 0.00 3.03 0.00 3.95 0.00 0.00 0.00 3.53 NA NA NA NA NA 9.52 NA NA NA NA 1.54 0.00 NA 1.35 0.00 NA NA NA NA 0.00 NA 8.77 2.86 NA NA 0.00 4.76 0.00 1.12 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 K alternative_donor CG9821,I_chr3R_4644986_4645248,I_chr3R_4644986_4645577,I_chr3R_4644986_4645648,I_chr3R_4644986_4646263,RI_chr3R_4644986_4646264,RI_chr3R_4645903_4646033 chr3R - chr3R_4644986_4645248;chr3R_4644986_4645577;chr3R_4644986_4646033 chr3R_4644986_4645649 chr3R_4644886_4644985;chr3R_4646034_4646133 74.45 74.45 74.86 73.72 69.16 70.55 76.18 73.65 74.96 67.16 71.32 77.72 70.40 73.44 74.48 77.27 70.10 77.56 74.43 76.29 78.81 71.84 80.51 82.52 79.31 73.68 72.54 64.05 46.43 68.33 72.57 68.75 68.47 73.41 76.56 76.61 82.61 73.13 79.31 73.66 59.65 74.37 80.21 83.97 64.71 75.82 78.48 66.44 76.16 75.00 75.00 73.12 82.93 80.56 76.50 77.59 78.85 70.83 N jcn_only_AA CG8839,I_chr2R_8229288_8231538 chr2R - chr2R_8228920_8228992 chr2R_8228935_8228992 chr2R_8228993_8229287;chr2R_8228715_8228919 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 79.34 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD sax chr2R + chr2R_3694707_3695073 chr2R_3694857_3695073 chr2R_3695074_3695149;chr2R_3694577_3694706 0.00 0.00 0.94 0.00 0.00 0.00 0.89 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 2.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 K jcn_only_AD dj-1beta,I_chr3R_26643930_26646602 chr3R + chr3R_26633376_26633455 chr3R_26633390_26633455 chr3R_26633456_26633524;chr3R_26633310_26633375 100.00 100.00 100.00 99.64 100.00 100.00 100.00 99.61 99.74 100.00 100.00 99.48 100.00 100.00 100.00 99.03 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.71 100.00 100.00 99.62 100.00 100.00 100.00 100.00 99.10 100.00 100.00 100.00 99.70 99.73 100.00 100.00 99.83 100.00 99.52 99.38 100.00 100.00 99.81 99.59 100.00 100.00 99.71 100.00 100.00 99.82 100.00 99.59 100.00 99.42 100.00 K jcn_only_AA Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8089737_8105696;chr2L_8089737_8105691 chr2L_8089737_8102299 chr2L_8089558_8089736 0.00 0.00 0.18 0.09 0.23 0.00 0.00 0.00 0.00 1.88 0.00 0.00 0.00 0.17 0.00 0.09 0.00 0.19 0.00 0.09 0.21 0.00 0.28 0.00 0.00 0.33 0.17 0.00 0.29 0.00 0.00 0.00 0.00 0.16 0.00 0.23 0.00 0.25 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.17 0.00 0.00 0.00 0.11 0.33 0.00 0.25 K alternative_donor CG31278,noncoding_15893,RI_chr3R_6533509_6533568 chr3R - chr3R_6533509_6533960;chr3R_6533509_6533579 chr3R_6533509_6533568 chr3R_6533409_6533508;chr3R_6533961_6534040 9.38 11.76 6.67 3.70 14.29 0.00 5.88 5.00 14.29 40.00 6.25 19.23 10.00 7.14 15.79 0.00 0.00 11.11 6.25 7.14 7.69 11.11 19.05 19.05 12.50 5.56 30.00 5.56 4.55 7.69 34.69 0.00 6.67 9.09 22.22 10.00 11.54 13.04 10.00 21.05 0.00 7.69 9.09 17.65 0.00 10.00 8.70 15.38 9.38 14.29 7.69 16.67 10.00 11.76 6.25 13.04 6.06 6.90 K intron_retention CG6860,RFI_chr2L_17371821_17372564 chr2L - chr2L_17372846_17372904 chr2L_17372845_17372846;chr2L_17372904_17372905 chr2L_17372708_17372845;chr2L_17372905_17373517 0.00 0.00 0.00 3.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.53 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.62 0.50 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32594,CG5541 chrX + chrX_14944172_14944232 chrX_14944171_14944172;chrX_14944232_14944233 chrX_14943794_14944171;chrX_14944233_14944392 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 K intron_retention CG31635,I_chr2L_6639349_6639396,I_chr2L_6646948_6648945 chr2L - chr2L_6637025_6637977 chr2L_6637024_6637025;chr2L_6637977_6637978 chr2L_6635653_6637024;chr2L_6637978_6639335 0.00 NA NA 0.00 NA NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA NA NA NA 5.88 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA K jcn_only_AA mask,I_chr3R_20073365_20073461 chr3R + chr3R_20061993_20062066 chr3R_20061993_20062063 chr3R_20061749_20061992;chr3R_20062067_20062235 84.53 80.60 80.95 85.14 78.69 87.21 76.99 83.80 86.90 82.35 89.23 84.78 83.54 93.65 81.63 84.54 81.58 78.05 78.57 83.14 86.76 81.33 86.14 86.11 80.00 81.82 88.24 85.00 75.00 83.95 88.42 NA 87.62 80.39 88.52 84.52 85.96 84.44 79.05 86.32 NA 83.98 91.30 86.67 NA NA NA 90.38 83.12 NA 84.27 88.24 94.87 NA 88.98 90.91 NA NA K intron_retention I_chr2L_114992_156735,I_chr2L_114992_156175,RI_chr2L_155430_155637,CG11455,CG3436 chr2L + chr2L_155785_155857 chr2L_155784_155785;chr2L_155857_155858 chr2L_155638_155784;chr2L_155858_155970 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.94 0.00 0.00 1.57 0.00 0.00 0.00 1.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 1.00 0.00 0.36 0.00 0.00 0.40 1.24 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 K jcn_only_AD Csk,I_chr3R_7463337_7463512,I_chr3R_7468928_7472509 chr3R - chr3R_7461967_7462050 chr3R_7461967_7462023 chr3R_7461898_7461966;chr3R_7462051_7462126 100.00 100.00 99.18 99.67 100.00 100.00 100.00 100.00 99.79 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.81 99.39 100.00 100.00 100.00 100.00 99.57 99.59 100.00 99.68 99.71 100.00 99.39 99.32 100.00 99.72 100.00 99.73 100.00 100.00 99.60 99.55 100.00 100.00 100.00 100.00 100.00 99.44 99.72 100.00 100.00 99.80 99.66 99.61 100.00 100.00 100.00 100.00 100.00 K intron_retention Psn,RI_chr3L_20430213_20430358 chr3L + chr3L_20425808_20425866 chr3L_20425807_20425808;chr3L_20425866_20425867 chr3L_20425774_20425807;chr3L_20425867_20426106 1.79 0.00 0.00 3.61 0.00 0.00 3.37 2.44 1.57 6.82 3.70 2.22 0.00 1.79 0.00 0.00 3.39 0.00 0.00 2.04 0.00 6.19 2.94 3.03 2.38 9.23 2.90 2.94 16.88 4.00 0.00 0.00 0.00 0.00 0.00 6.25 3.17 1.92 2.47 2.82 6.90 0.85 0.00 1.19 0.00 3.64 0.00 3.92 2.22 1.41 4.44 0.00 0.00 8.70 0.00 0.00 0.00 0.00 K intron_retention klar,I_chr3L_462559_472609,RI_chr3L_517594_539898 chr3L - chr3L_451772_454108 chr3L_451771_451772;chr3L_454108_454109 chr3L_451127_451771;chr3L_454109_454405 35.80 42.86 NA 23.40 NA NA 58.82 34.62 54.17 NA NA 18.92 35.71 NA 63.64 NA NA 33.33 30.77 35.90 50.00 10.29 25.00 28.57 NA NA 42.31 54.55 26.67 56.25 15.38 NA 42.86 42.11 25.00 17.24 32.00 38.46 28.00 NA NA 37.04 NA 38.89 NA 47.06 NA 37.50 61.11 28.57 26.09 NA NA 42.86 50.00 33.33 30.77 NA K cassette hppy,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15105700_15111557;chr2R_15105700_15110744 chr2R_15105700_15108248;chr2R_15108288_15110744,chr2R_15108288_15111557 chr2R_15108249_15108287 chr2R_15105636_15105699;chr2R_15111558_15111891 19.35 19.15 23.68 45.10 21.62 11.76 7.69 16.39 21.78 14.81 14.71 31.43 16.67 29.17 19.61 20.00 18.92 11.90 23.08 28.40 23.68 15.71 24.00 18.52 34.21 38.46 16.39 12.24 12.82 22.22 30.77 10.00 24.56 28.12 19.57 12.24 16.22 17.86 13.24 19.35 21.88 25.32 15.38 14.04 16.67 24.32 12.00 22.73 22.09 19.35 14.93 24.32 11.11 19.23 28.57 18.42 10.87 21.05 K intron_retention Aldh-III,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3357578_3357636 chr2R_3357577_3357578;chr2R_3357636_3357637 chr2R_3357478_3357577;chr2R_3357637_3357687 15.88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.76 NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG6448,I_chr2L_22156816_22158491 chr2L + chr2L_22156816_22158512 chr2L_22156815_22156816;chr2L_22158512_22158513 chr2L_22156716_22156815;chr2L_22158513_22158591 0.63 1.45 0.00 3.80 0.00 4.65 0.00 1.82 2.02 0.00 6.41 0.00 0.00 1.18 0.00 1.01 1.77 0.00 0.94 1.06 4.08 0.87 0.00 0.00 0.98 0.00 0.63 2.56 0.00 0.00 0.95 0.00 2.68 3.03 0.00 1.72 0.51 0.72 2.51 0.00 0.00 2.91 1.30 0.64 0.00 1.61 1.43 0.00 0.60 0.00 0.00 1.41 0.00 0.00 0.82 0.00 0.58 0.00 K intron_retention Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2611160_2611315 chr3L_2611159_2611160;chr3L_2611315_2611316 chr3L_2610494_2611159;chr3L_2611316_2611367 0.86 0.62 0.74 0.88 0.80 1.01 2.02 0.89 0.94 0.00 0.78 1.70 1.40 0.91 0.40 0.82 1.18 3.30 0.89 0.66 0.39 6.82 0.61 0.73 0.00 0.81 1.32 0.00 0.00 0.86 2.46 1.17 0.68 1.02 1.03 3.32 1.33 0.49 0.78 1.13 0.00 0.51 1.56 0.28 2.37 1.08 0.71 0.00 0.90 0.59 1.59 1.40 0.81 1.62 0.78 0.90 0.46 0.42 K intron_retention UGP chr3L - chr3L_9344951_9345017 chr3L_9344950_9344951;chr3L_9345017_9345018 chr3L_9344580_9344950;chr3L_9345018_9345427 0.00 0.00 0.00 5.71 0.00 0.00 0.00 1.47 0.00 1.30 0.00 0.00 0.00 0.00 0.00 5.36 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CycG,I_chr3R_27427946_27436602,I_chr3R_27427953_27429034,I_chr3R_27427953_27431334,RE_chr3R_27427953_27436598 chr3R - chr3R_27428796_27436602 chr3R_27428795_27428796;chr3R_27436602_27436603 chr3R_27428793_27428795;chr3R_27436603_27436698 70.83 77.27 71.79 69.35 66.67 74.07 70.69 78.65 68.09 72.73 66.67 77.22 74.36 66.67 78.38 75.90 76.74 70.83 76.09 60.71 80.95 33.33 66.67 71.43 68.42 55.56 83.33 66.67 58.82 70.00 64.15 NA 53.33 71.83 71.43 64.00 56.25 63.64 100.00 60.00 54.55 69.01 63.64 76.47 NA NA NA 77.14 92.00 NA 72.22 53.33 87.50 NA 75.00 NA NA 75.00 K alternative_acceptor CG7852,Cct1,Cct2 chr3L + chr3L_1537243_1537523 chr3L_1537243_1537506 chr3L_1537183_1537242;chr3L_1537524_1537989 2.27 5.88 0.00 15.38 0.00 NA 2.94 0.00 2.13 0.00 NA 4.17 10.00 8.33 0.00 12.50 0.00 0.00 0.00 8.00 5.56 2.27 2.27 0.00 5.56 5.88 3.85 3.77 0.00 0.00 6.90 NA 0.00 2.86 0.00 7.41 3.23 0.00 3.33 1.35 5.00 4.88 NA 2.08 0.00 0.00 NA 2.56 0.00 3.03 2.63 0.00 5.56 NA 3.85 0.00 0.00 0.00 K intron_retention eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20344831_20345906 chr3L_20344830_20344831;chr3L_20345906_20345907 chr3L_20344683_20344830;chr3L_20345907_20346229 0.00 0.00 0.00 0.62 0.00 0.00 1.54 0.00 0.45 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Grip84 chrX - chrX_19455829_19456724 chrX_19455829_19456443;chrX_19456543_19456724 chrX_19456444_19456542 chrX_19455530_19455828;chrX_19456725_19457046 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG15173,RI_chr2L_19044304_19044369 chr2L - chr2L_19044304_19044369 chr2L_19044318_19044369 chr2L_19044370_19044469;chr2L_19044204_19044303 91.67 NA NA 100.00 NA NA 96.00 NA 96.00 NA NA 91.67 NA NA NA NA NA NA NA 92.31 NA NA NA NA NA NA NA NA NA NA 86.67 NA 85.19 NA NA NA NA NA NA NA NA 89.29 NA NA NA 91.67 NA NA NA NA NA NA NA NA NA NA NA 87.50 K alternative_acceptor Dredd,RI_chrX_529342_529426 chrX - chrX_528085_528157 chrX_528090_528157 chrX_528158_528520;chrX_527935_528084 100.00 100.00 NA NA NA NA 100.00 100.00 92.86 NA NA 90.91 NA NA NA NA NA NA NA 90.00 NA NA 87.50 100.00 NA NA NA NA NA NA 91.67 NA NA NA NA NA 100.00 NA 100.00 NA NA 92.86 NA NA 100.00 NA NA NA 100.00 100.00 100.00 NA NA NA NA 87.50 100.00 NA K intron_retention Pect,I_chr2L_13207997_13208109,E_chr2L_13208285_13210076 chr2L + chr2L_13208488_13208664 chr2L_13208487_13208488;chr2L_13208664_13208665 chr2L_13208421_13208487;chr2L_13208665_13208777 0.43 1.04 0.79 0.62 0.00 0.00 0.65 0.43 0.74 0.00 0.00 0.50 0.32 0.53 0.71 0.48 0.68 0.00 0.95 0.35 0.53 0.00 0.83 0.91 0.86 0.55 1.81 2.46 1.02 0.23 0.49 0.00 0.18 0.75 0.00 0.71 0.55 0.00 0.68 0.35 0.00 0.00 0.00 0.26 0.00 0.71 0.00 0.34 0.90 0.00 0.72 1.04 0.39 0.00 0.21 0.00 0.00 0.00 K intron_retention CG3829,I_chr2R_20874677_20875710,I_chr2R_20874711_20875717,I_chr2R_20875172_20875710,I_chr2R_20875497_20875710 chr2R + chr2R_20874711_20875710 chr2R_20874710_20874711;chr2R_20875710_20875711 chr2R_20874611_20874710;chr2R_20875711_20875810 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2813977;chr2R_2814097_2814174;chr2R_2814327_2816013;chr2R_2816342_2817753 chr2R_2813978_2814096;chr2R_2814175_2814326;chr2R_2816014_2816341 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention I_chr3L_6946805_6946872,CG10075 chr3L - chr3L_6950704_6950762 chr3L_6950703_6950704;chr3L_6950762_6950763 chr3L_6950452_6950703;chr3L_6950763_6950951 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG5355,I_chr2L_10413213_10413324 chr2L - chr2L_10413213_10413324 chr2L_10413220_10413324 chr2L_10413325_10413424;chr2L_10413113_10413212 99.64 100.00 100.00 99.56 99.11 100.00 98.40 99.16 99.64 98.80 98.67 99.13 99.12 100.00 100.00 100.00 100.00 100.00 99.12 99.13 100.00 100.00 99.47 100.00 98.73 100.00 100.00 98.52 99.13 99.06 100.00 100.00 99.40 99.39 98.88 100.00 99.28 100.00 100.00 98.61 100.00 99.62 100.00 99.43 100.00 100.00 99.12 99.25 99.55 98.80 100.00 100.00 98.48 100.00 100.00 100.00 98.58 100.00 K jcn_only_AD Pp2A-29B,I_chr2L_8367210_8367311,I_chr2L_8369561_8369715,RI_chr2L_8369761_8369827 chr2L + chr2L_8369031_8369715 chr2L_8369561_8369715 chr2L_8369716_8369760;chr2L_8368758_8369030 0.45 0.00 0.48 0.00 0.00 0.00 0.24 0.58 0.00 1.40 1.02 0.59 0.43 0.00 0.00 1.83 0.45 0.73 0.00 0.37 0.00 0.59 0.43 0.50 0.45 0.00 0.47 0.58 1.91 1.51 1.66 2.20 3.15 0.00 0.00 0.49 1.27 0.00 0.59 0.29 1.66 0.71 1.45 0.00 0.00 0.36 1.26 0.90 0.00 0.44 0.25 0.39 0.00 0.43 0.80 0.56 1.00 0.78 K alternative_last_exon CG32982,I_chr2L_9127467_9148754,EF_chr2L_9135385_9148841,F_chr2L_9149162_9154658 chr2L + chr2L_9162709_9163294,chr2L_9162709_9163143,chr2L_9162709_9163140 chr2L_9162709_9162782 chr2L_9163295_9163398 chr2L_9162783_9162851 chr2L_9162363_9162708 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA SdhC,CG6672 chr3R - chr3R_7035448_7035519 chr3R_7035463_7035519 chr3R_7035520_7035588;chr3R_7034856_7035447 100.00 100.00 100.00 99.32 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.57 100.00 100.00 99.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 99.65 98.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 NA 100.00 100.00 100.00 100.00 K cassette CG6767,CREI_chr3L_9679564_9687332,I_chr3L_9680354_9682364,I_chr3L_9682549_9689638,I_chr3L_9682607_9687332,RE_chr3L_9679576_9682364,RI_chr3L_9679579_9682364 chr3L - chr3L_9679564_9687332 chr3L_9679564_9682364;chr3L_9682549_9687332 chr3L_9682365_9682548 chr3L_9679479_9679563;chr3L_9687333_9687431 94.44 97.44 97.62 93.62 93.94 97.14 94.44 98.18 94.81 93.55 95.45 94.29 100.00 97.44 97.73 97.96 97.06 93.94 97.73 96.88 100.00 95.00 93.33 92.50 85.71 96.00 94.44 95.65 90.91 90.24 83.72 95.00 93.33 94.12 89.19 93.10 94.00 90.70 90.91 91.14 85.37 94.94 97.30 92.86 97.73 98.08 88.89 98.98 97.73 97.62 91.84 93.10 95.35 88.24 94.55 89.74 93.33 97.44 K intron_retention CG9855,I_chr3R_223384_223429 chr3R - chr3R_223363_223429 chr3R_223362_223363;chr3R_223429_223430 chr3R_223284_223362;chr3R_223430_223529 5.06 5.26 5.17 2.74 0.00 5.00 5.45 0.00 4.60 9.68 2.70 2.15 0.00 0.00 4.65 6.12 5.71 2.33 0.00 6.67 3.70 7.55 0.00 8.89 0.00 0.00 6.82 6.67 3.77 6.82 13.16 2.94 6.98 4.76 11.11 0.00 5.06 3.57 13.79 11.94 2.56 2.15 0.00 2.70 20.00 8.51 17.50 0.00 5.06 20.59 10.00 0.00 6.90 15.62 6.38 14.00 17.39 0.00 K jcn_only_AD fs(1)h,I_chrX_7938425_7938871,I_chrX_7938425_7938878,I_chrX_7938449_7944184,I_chrX_7950171_7952371,I_chrX_7954192_7955240 chrX - chrX_7938425_7944184;chrX_7938425_7938878 chrX_7938425_7938871 chrX_7938366_7938424;chrX_7944185_7944284 1.61 0.00 2.38 3.03 0.00 0.00 1.85 0.00 0.98 5.00 3.12 0.00 3.12 6.06 3.45 6.90 0.00 10.00 0.00 1.08 3.12 1.37 0.00 0.00 3.92 0.00 1.52 2.60 0.00 7.50 4.55 3.03 1.69 2.90 1.41 1.14 1.27 0.00 2.25 1.96 0.00 0.93 0.00 1.69 1.67 3.57 1.52 0.00 0.95 1.61 0.00 4.17 3.51 3.12 2.94 0.00 6.06 0.00 K alternative_donor mav,RI_chr4_645290_646129 chr4 - chr4_645290_646129 chr4_645290_645397 chr4_645190_645289;chr4_646130_646229 100.00 100.00 100.00 95.00 100.00 90.00 91.67 100.00 96.67 100.00 100.00 100.00 86.67 100.00 100.00 96.30 92.31 87.50 94.12 95.83 87.50 100.00 100.00 88.89 100.00 100.00 88.89 100.00 100.00 88.89 100.00 83.33 100.00 100.00 87.50 100.00 100.00 100.00 100.00 92.31 62.50 82.61 100.00 90.91 100.00 91.67 100.00 90.00 96.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 87.50 90.91 K jcn_only_AD Fkbp13,I_chr2R_17375346_17375523 chr2R - chr2R_17375351_17375523 chr2R_17375351_17375511 chr2R_17374670_17375350;chr2R_17375524_17375623 0.55 0.39 0.00 0.76 0.18 0.79 0.80 0.30 0.42 1.00 0.96 0.76 0.49 1.18 1.34 0.31 0.56 0.00 0.51 0.69 0.71 0.54 1.17 0.80 1.74 0.60 1.40 1.60 3.78 0.43 0.33 0.71 0.48 0.64 0.25 0.72 0.74 0.46 0.65 0.39 0.31 0.51 0.00 0.23 0.55 0.30 0.51 0.18 0.55 0.93 0.17 0.21 0.68 0.40 0.77 0.23 0.27 0.59 K cassette sw chrX - chrX_20106821_20107156 chrX_20106821_20106881;chrX_20107025_20107156 chrX_20106882_20107024 chrX_20106583_20106820;chrX_20107157_20107424 4.71 6.02 6.10 1.72 4.29 5.00 7.69 4.81 4.29 6.56 3.61 4.59 4.11 3.85 6.32 5.38 3.03 2.94 4.41 3.47 3.75 4.26 2.27 10.53 3.85 5.63 2.67 4.84 5.61 3.07 5.41 4.76 2.71 5.61 1.27 2.35 4.43 4.71 5.68 5.00 7.41 5.77 6.35 3.95 3.10 5.31 1.18 2.99 5.17 2.90 5.26 8.51 8.47 5.00 5.26 4.76 2.17 3.41 K jcn_only_AD skd chr3L - chr3L_21018649_21020395;chr3L_21018649_21020285;chr3L_21018649_21020239 chr3L_21018649_21019229 chr3L_21018052_21018648;chr3L_21020396_21020501 8.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention BRWD3 chr3R + chr3R_20144880_20145130 chr3R_20144879_20144880;chr3R_20145130_20145131 chr3R_20144726_20144879;chr3R_20145131_20145189 1.93 5.56 0.00 8.33 NA 0.00 15.00 6.67 0.00 NA NA 3.85 0.00 NA NA 3.85 0.00 NA 0.00 12.00 NA 0.00 0.00 5.26 NA NA 0.00 NA NA 9.09 5.56 NA 0.00 4.76 0.00 0.00 0.00 NA 0.00 7.69 NA 0.00 NA 10.53 NA 10.00 NA 0.00 15.38 NA 4.35 0.00 NA NA 5.26 NA NA NA K cassette Cda5 chr2L - chr2L_33271_34557;chr2L_29069_34557 chr2L_29069_33844,chr2L_33271_33844;chr2L_34284_34557 chr2L_33845_34283 chr2L_29024_29068;chr2L_34558_34596 100.00 NA NA NA NA NA NA 100.00 85.71 NA NA NA NA NA NA 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 NA 75.00 NA NA NA NA NA NA NA NA NA NA 75.00 NA NA 100.00 NA 100.00 NA 100.00 NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 K intron_retention CG5316 chr3R + chr3R_15231705_15231771 chr3R_15231704_15231705;chr3R_15231771_15231772 chr3R_15230564_15231704;chr3R_15231772_15232013 100.00 94.44 93.75 100.00 100.00 100.00 97.50 100.00 100.00 NA 100.00 97.14 100.00 100.00 95.45 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 94.44 96.55 100.00 95.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 95.00 100.00 100.00 100.00 96.00 97.92 100.00 100.00 91.67 100.00 95.24 100.00 100.00 100.00 100.00 K intron_retention boi,I_chrX_2363445_2363896 chrX - chrX_2340858_2340922 chrX_2340857_2340858;chrX_2340922_2340923 chrX_2340675_2340857;chrX_2340923_2341630 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rme-8 chr2R - chr2R_5063440_5063595 chr2R_5063439_5063440;chr2R_5063595_5063596 chr2R_5063238_5063439;chr2R_5063596_5063740 0.00 0.00 0.00 2.17 0.00 0.00 4.88 2.22 0.00 NA 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 0.00 6.52 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 4.55 0.00 NA 0.00 3.70 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 5.56 NA NA 5.41 NA NA NA K intron_retention drongo,RI_chr2L_837379_837747,I_chr2L_837379_847733 chr2L - chr2L_837379_849898 chr2L_837378_837379;chr2L_849898_849899 chr2L_837279_837378;chr2L_849899_850427 0.00 0.00 1.82 1.83 3.49 0.00 0.76 2.21 1.08 0.00 0.00 1.32 0.00 1.05 1.00 2.11 0.00 1.23 0.00 0.82 0.00 1.12 0.29 0.00 0.00 1.20 0.95 0.00 0.00 0.00 2.44 0.00 0.00 1.22 0.00 0.00 0.00 0.45 0.52 0.40 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.77 0.00 0.00 2.88 0.00 0.00 0.00 K intron_retention JIL-1,I_chr3L_11072863_11073402,I_chr3L_11084873_11085218 chr3L - chr3L_11072863_11073526 chr3L_11072862_11072863;chr3L_11073526_11073527 chr3L_11072763_11072862;chr3L_11073527_11073584 100.00 100.00 100.00 96.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 93.33 92.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 94.44 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 K jcn_only_AA CG3702,I_chr2L_4226795_4226846 chr2L - chr2L_4226768_4226846 chr2L_4226795_4226846 chr2L_4226847_4226946;chr2L_4226695_4226767 0.72 1.27 0.00 0.00 0.00 0.00 0.00 0.65 0.00 1.42 1.72 1.17 0.00 1.90 0.00 0.69 0.00 2.30 0.94 1.39 0.00 0.00 1.09 1.09 1.27 0.00 0.68 2.03 0.36 0.43 1.46 0.00 1.12 1.99 1.71 1.34 0.62 1.54 1.14 0.63 0.93 1.39 1.12 1.15 0.00 1.13 0.00 0.92 0.51 0.00 1.98 0.78 0.00 0.89 0.72 0.00 0.00 0.55 K intron_retention His2Av chr3R + chr3R_22693505_22694077 chr3R_22693504_22693505;chr3R_22694077_22694078 chr3R_22693391_22693504;chr3R_22694078_22694408 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG1657 chrX + chrX_11219544_11222056;chrX_11219635_11222056 chrX_11219604_11222056 chrX_11222057_11222225;chrX_11219475_11219543 0.00 3.45 0.00 0.00 NA NA NA 2.78 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 NA 3.85 0.00 0.00 2.13 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 K intron_retention CG14657 chr3R - chr3R_645989_646054 chr3R_645988_645989;chr3R_646054_646055 chr3R_645961_645988;chr3R_646055_647174 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA RhoGDI chr3L + chr3L_19922009_19923920 chr3L_19922009_19923914 chr3L_19921868_19922008;chr3L_19923921_19924114 98.99 98.72 99.38 98.56 99.24 99.28 99.12 98.70 99.51 98.90 99.40 99.15 100.00 98.96 99.56 98.99 97.67 100.00 97.59 98.48 97.65 98.17 99.43 100.00 100.00 100.00 98.66 98.53 98.95 99.17 98.02 100.00 97.92 99.29 99.09 96.92 99.51 98.47 98.37 98.10 98.68 98.99 100.00 100.00 98.68 97.42 99.28 98.84 97.90 98.28 99.37 99.26 100.00 99.17 98.96 100.00 97.62 100.00 K alternative_donor CG30381,RI_chr2R_3817895_3817951,RI_chr2R_3819348_3819403 chr2R - chr2R_3817895_3817956 chr2R_3817895_3817951 chr2R_3817795_3817894;chr2R_3817957_3818051 0.00 0.00 NA NA NA 0.00 NA NA 0.00 NA NA 4.76 6.67 NA 0.00 NA NA 0.00 0.00 9.09 NA 0.00 12.50 4.55 NA NA 7.69 NA NA NA NA NA NA 5.56 NA NA 7.14 0.00 NA 4.35 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 14.29 0.00 NA NA 0.00 NA NA 5.56 NA K intron_retention Lnk,RI_chr3R_21714780_21715376 chr3R + chr3R_21717757_21718170 chr3R_21717756_21717757;chr3R_21718170_21718171 chr3R_21716440_21717756;chr3R_21718171_21718878 89.18 100.00 NA 89.47 NA NA 100.00 85.71 81.82 87.50 NA 93.75 NA NA 80.00 NA NA NA NA 95.45 NA 89.66 95.24 85.00 81.82 NA 93.75 78.95 97.06 91.67 88.89 92.59 93.75 92.86 92.31 83.33 87.50 87.50 80.00 55.32 92.86 86.96 NA 86.67 87.23 95.45 81.25 95.29 94.44 84.62 91.67 NA 90.91 88.89 NA 71.43 83.33 92.04 K intron_retention Cbp80,I_chrX_4545969_4549703,I_chrX_4551105_4551157 chrX + chrX_4545969_4550615 chrX_4545968_4545969;chrX_4550615_4550616 chrX_4545869_4545968;chrX_4550616_4551104 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 5.71 0.00 1.53 0.00 0.00 1.22 0.00 0.00 2.74 1.85 0.00 0.00 0.00 0.68 0.00 0.00 0.00 1.61 0.00 0.00 1.16 0.00 0.00 1.75 0.00 1.89 0.00 0.00 0.00 0.00 1.94 0.00 0.79 0.00 2.41 0.00 0.00 0.00 1.92 0.95 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention lva,CG6428 chrX - chrX_3850006_3850081 chrX_3850005_3850006;chrX_3850081_3850082 chrX_3849590_3850005;chrX_3850082_3850278 0.00 0.00 0.00 3.37 0.00 0.00 2.00 0.00 0.00 0.00 0.00 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.38 0.00 2.00 1.12 0.00 0.00 0.00 0.00 3.23 8.86 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 1.13 0.78 0.97 0.00 0.00 3.37 0.00 0.00 0.00 0.00 0.00 0.00 1.49 1.71 K intron_retention CG6701,RI_chr2R_9866896_9867532 chr2R - chr2R_9862343_9862431 chr2R_9862342_9862343;chr2R_9862431_9862432 chr2R_9862096_9862342;chr2R_9862432_9862708 0.00 0.00 2.70 0.67 0.00 0.00 0.00 1.11 0.43 0.00 0.00 0.00 0.00 1.43 0.00 1.47 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 0.00 0.00 1.22 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.73 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 K alternative_donor lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6394546_6419543,RI_chr2R_6403557_6403850,I_chr2R_6403557_6406705,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6403557_6419543 chr2R_6403557_6403850 chr2R_6403457_6403556;chr2R_6419544_6419624 1.20 1.20 0.97 1.61 0.00 0.97 1.34 1.61 1.43 2.13 1.54 1.64 1.08 1.14 0.85 2.13 1.27 1.09 0.89 0.89 1.56 3.36 1.20 2.41 1.10 1.02 1.90 3.92 1.26 0.78 0.69 1.49 0.75 1.10 0.71 1.32 1.57 1.11 0.69 0.70 1.20 0.80 1.28 1.89 0.93 1.83 1.72 1.04 0.82 3.85 1.50 1.79 0.00 2.17 0.81 1.92 2.70 0.59 K alternative_donor RpL12,I_chr2R_19948517_19948682 chr2R + chr2R_19947968_19948035 chr2R_19947973_19948035 chr2R_19948036_19948097;chr2R_19947923_19947967 31.46 34.48 37.21 33.33 43.10 50.00 52.63 39.47 52.63 9.09 32.08 41.18 38.46 38.89 37.50 32.20 32.08 34.88 39.47 35.38 44.44 14.29 NA 0.00 NA 38.24 13.33 5.45 26.09 16.67 32.88 23.08 16.67 45.59 16.67 6.67 30.77 NA NA 3.46 15.09 49.56 33.33 2.04 27.69 9.43 13.33 8.77 42.86 17.65 NA 11.11 15.58 NA 31.46 6.67 7.14 16.41 K intron_retention SMSr chr3L - chr3L_7369009_7373720 chr3L_7369008_7369009;chr3L_7373720_7373721 chr3L_7368505_7369008;chr3L_7373721_7373998 95.38 82.35 100.00 97.14 100.00 95.65 97.06 95.83 93.75 93.33 100.00 97.73 100.00 93.75 96.30 96.88 100.00 100.00 95.45 98.28 100.00 94.12 85.11 97.50 95.45 90.91 95.56 95.00 95.65 96.15 90.48 94.44 96.55 95.35 100.00 87.50 85.71 89.19 89.09 89.58 91.67 95.38 90.00 80.00 100.00 93.75 96.15 95.24 90.57 100.00 89.80 91.67 89.29 96.88 90.00 96.88 92.11 94.12 K intron_retention CG5484 chr3R + chr3R_22544589_22544643 chr3R_22544588_22544589;chr3R_22544643_22544644 chr3R_22544050_22544588;chr3R_22544644_22545030 0.00 0.00 0.00 0.00 0.76 0.00 0.42 0.00 0.30 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 1.57 1.94 0.00 0.00 0.00 0.00 0.00 3.47 0.70 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 K intron_retention F_chr2R_14309059_14311473,CG12263 chr2R + chr2R_14314078_14314208 chr2R_14314077_14314078;chr2R_14314208_14314209 chr2R_14313981_14314077;chr2R_14314209_14314380 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA K jcn_only_AA CG12582 chr3R + chr3R_23594_23980;chr3R_23594_23942 chr3R_23594_23930 chr3R_23459_23593;chr3R_23981_24494 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.14 0.00 0.00 0.17 0.33 0.33 0.00 0.20 0.00 0.00 0.28 0.00 0.00 0.38 0.51 0.00 0.40 1.10 0.24 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.41 0.29 0.29 0.00 0.18 0.53 0.00 0.00 0.42 0.00 0.50 0.00 0.00 0.00 0.34 0.30 0.00 0.43 0.00 0.36 0.00 0.00 0.00 0.00 K intron_retention CG5594,CG2812 chr2R + chr2R_19801010_19801064 chr2R_19801009_19801010;chr2R_19801064_19801065 chr2R_19800791_19801009;chr2R_19801065_19801221 0.00 0.00 0.00 0.00 0.00 0.71 0.36 0.00 0.22 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 4.40 2.35 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.45 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.35 0.00 0.00 0.00 0.67 0.00 0.00 0.00 K intron_retention sol chrX + chrX_21221878_21225120 chrX_21221877_21221878;chrX_21225120_21225121 chrX_21221327_21221877;chrX_21225121_21225440 63.64 NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA 63.64 NA 35.48 66.67 NA NA NA NA NA NA NA NA NA 20.00 77.78 NA 36.84 NA NA NA 63.64 NA 70.00 NA NA NA NA NA 53.85 NA NA NA NA NA NA NA NA NA NA K intron_retention CG14414,I_chrX_14474880_14474927 chrX + chrX_14475073_14475614 chrX_14475072_14475073;chrX_14475614_14475615 chrX_14474998_14475072;chrX_14475615_14475707 0.00 5.26 0.00 0.00 0.00 0.00 5.13 7.69 0.00 8.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 3.64 0.00 7.89 1.75 5.00 0.00 0.00 5.17 0.00 17.65 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 3.28 5.45 2.04 3.03 0.00 0.00 4.23 3.17 7.27 2.27 2.27 4.08 3.33 0.00 2.13 0.00 3.57 1.54 2.82 0.00 K alternative_donor larp,F_chr3R_24151542_24153876,I_chr3R_24160430_24160932,I_chr3R_24160430_24160971,RI_chr3R_24160430_24161527 chr3R - chr3R_24160430_24161729;chr3R_24160430_24160932;chr3R_24160430_24160971;chr3R_24160430_24160975;chr3R_24160430_24161939;chr3R_24160430_24161527 chr3R_24160430_24160979 chr3R_24160330_24160429;chr3R_24161940_24162125 9.93 14.10 13.04 8.28 11.67 13.51 9.80 7.56 9.22 8.33 9.84 9.66 9.21 7.87 7.95 9.93 6.41 8.33 8.70 11.25 11.76 6.93 10.53 14.14 17.54 10.81 9.28 6.84 12.00 11.39 7.29 6.90 8.55 7.50 12.12 13.16 12.63 11.59 9.00 9.30 11.54 9.89 9.38 10.96 13.64 11.67 10.29 12.40 12.66 9.38 12.75 9.33 13.33 9.09 6.73 15.22 12.77 18.56 K alternative_acceptor CG10424,RI_chr3L_19090338_19090405 chr3L - chr3L_19090328_19090405 chr3L_19090338_19090405 chr3L_19090406_19090505;chr3L_19090238_19090327 4.44 2.90 4.08 2.53 0.00 2.44 3.85 3.70 3.88 6.06 4.88 2.44 6.25 0.00 0.00 2.27 0.00 4.44 0.00 3.31 4.17 9.23 7.58 2.90 0.00 2.27 2.35 5.88 6.90 4.44 20.37 4.44 5.00 5.08 7.50 6.67 7.69 5.81 6.98 5.00 10.53 2.08 2.56 3.64 6.06 11.48 5.00 8.89 2.53 5.56 3.08 8.70 4.65 5.00 1.47 7.55 6.25 7.41 K mutually_exclusive Nmda1,R_chr2R_8766216_8766562,I_chr2R_8766652_8766956,I_chr2R_8766728_8766791,I_chr2R_8766728_8767623 chr2R - chr2R_8766216_8766701,chr2R_8766728_8766952 chr2R_8766216_8766556,chr2R_8766652_8766952 chr2R_8766702_8766727 chr2R_8766557_8766651 chr2R_8766116_8766215;chr2R_8766953_8767161 36.36 36.36 43.75 21.05 33.33 36.36 31.25 30.43 27.27 50.00 36.36 47.62 44.44 22.22 50.00 53.85 14.29 60.00 28.57 34.15 36.36 60.00 42.86 55.56 33.33 36.36 44.44 42.86 33.33 66.67 33.33 NA 37.50 41.18 50.00 NA 56.25 53.85 41.18 15.00 NA 45.16 28.57 26.32 42.86 36.36 18.18 40.00 33.33 36.36 29.41 36.36 28.57 14.29 25.00 45.45 45.45 NA K jcn_only_AD Rho1,I_chr2R_11990455_11992537,RI_chr2R_11991687_11992537 chr2R + chr2R_11990326_11991115;chr2R_11990814_11991115;chr2R_11990398_11991115 chr2R_11990362_11991115 chr2R_11991116_11991279;chr2R_11990232_11990325 0.00 NA NA 3.33 NA NA 0.00 6.67 0.00 NA NA 9.68 NA NA 13.04 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA 3.12 NA NA NA 3.70 NA NA 0.00 NA 0.00 NA NA NA 4.35 NA NA 0.00 K alternative_acceptor CG1440 chrX + chrX_8331328_8333141 chrX_8331328_8332952 chrX_8331282_8331327;chrX_8333142_8333791 26.42 21.28 25.00 8.79 30.23 34.55 28.26 6.02 17.82 24.14 40.54 27.00 26.83 21.92 28.33 19.54 18.87 45.45 20.90 32.04 34.09 32.65 28.30 34.21 31.82 26.92 29.17 33.33 38.89 23.26 20.90 20.00 21.43 12.84 21.62 21.05 25.00 35.48 34.29 27.87 24.24 21.19 19.64 30.91 25.00 26.42 30.77 21.43 17.71 28.57 29.63 30.30 21.21 17.65 25.81 28.57 27.50 15.69 K alternative_donor Rpn5 chr3R + chr3R_1615433_1615491;chr3R_1615437_1615491 chr3R_1615416_1615491 chr3R_1615492_1616546;chr3R_1615400_1615415 0.00 2.86 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 1.43 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 2.00 0.00 2.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 4.35 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention bonsai chr2R + chr2R_18525757_18525815 chr2R_18525756_18525757;chr2R_18525815_18525816 chr2R_18525623_18525756;chr2R_18525816_18526446 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.78 0.00 0.00 0.00 2.08 0.00 0.00 4.49 0.00 0.00 0.00 1.67 0.00 6.67 0.00 0.00 0.00 0.00 2.99 0.00 0.00 0.00 12.33 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 1.20 8.00 2.35 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 K intron_retention Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629585_2629913 chr3L_2629584_2629585;chr3L_2629913_2629914 chr3L_2629141_2629584;chr3L_2629914_2629921 46.15 35.29 33.33 62.11 33.33 41.82 36.51 56.52 47.57 46.15 21.95 56.00 40.71 49.33 44.44 52.79 43.18 52.17 47.83 41.89 18.75 NA 46.15 45.45 66.67 45.59 53.85 NA 60.71 35.00 47.83 50.00 58.82 44.90 42.31 70.00 28.57 50.00 33.33 42.62 55.17 40.38 40.00 30.43 40.00 50.00 37.50 44.83 52.32 53.33 54.76 47.37 50.00 41.67 46.74 54.17 71.43 56.76 K intron_retention Kap3 chrX - chrX_11228967_11229028 chrX_11228966_11228967;chrX_11229028_11229029 chrX_11228715_11228966;chrX_11229029_11229285 0.00 0.00 7.41 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA mRpL39 chr3L - chr3L_14991714_14991895 chr3L_14991723_14991895 chr3L_14991896_14991996;chr3L_14991280_14991713 100.00 100.00 100.00 100.00 100.00 100.00 98.28 100.00 100.00 100.00 100.00 100.00 100.00 98.41 100.00 97.67 98.55 100.00 100.00 100.00 100.00 98.81 100.00 99.34 98.31 98.88 99.18 100.00 98.46 98.98 100.00 100.00 100.00 100.00 98.31 100.00 99.37 100.00 99.32 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor betaggt-II,RI_chr2L_2879966_2880043 chr2L + chr2L_2879880_2880043 chr2L_2879966_2880043 chr2L_2880044_2880143;chr2L_2879866_2879879 0.00 0.00 0.00 4.65 0.00 3.12 2.56 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 9.84 0.00 0.00 0.00 0.00 1.85 6.90 4.44 0.00 3.57 0.00 1.01 2.00 0.00 0.00 1.20 1.67 0.00 1.45 2.38 0.00 0.00 0.00 0.00 3.17 2.00 2.08 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Hr78,I_chr3L_21490089_21490390,CG33214 chr3L - chr3L_21490008_21490390;chr3L_21490089_21490390;chr3L_21490023_21490390 chr3L_21489978_21490390 chr3L_21490391_21490490;chr3L_21489920_21489977 16.67 NA NA 20.00 NA 14.29 9.09 18.75 28.57 NA 0.00 15.38 0.00 18.18 28.57 26.67 NA 14.29 20.00 18.18 NA NA 10.00 25.00 NA 28.57 NA NA NA NA NA NA 37.50 16.67 NA NA NA NA NA 16.67 NA 13.33 10.00 0.00 NA NA NA NA 15.38 NA 25.00 33.33 NA NA 15.38 NA NA NA K intron_retention Srp14 chr3R + chr3R_16405915_16405970 chr3R_16405914_16405915;chr3R_16405970_16405971 chr3R_16405844_16405914;chr3R_16405971_16406043 0.00 0.00 0.00 0.00 0.00 0.00 3.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette CG42595,I_chr2RHet_3137161_3169314,I_chr2RHet_3137489_3169314,R_chr2RHet_3155511_3169164,F_chr2RHet_3155517_3156864,I_chr2RHet_3155517_3174709,F_chr2RHet_3157065_3157177,F_chr2RHet_3157374_3169168,RI_chr2RHet_3175044_3179353,I_chr2RHet_3179481_3179586 chr2RHet - chr2RHet_3137489_3169168 chr2RHet_3137489_3154308;chr2RHet_3154576_3154632;chr2RHet_3155279_3155342;chr2RHet_3155517_3169168 chr2RHet_3154309_3154575;chr2RHet_3154633_3155278;chr2RHet_3155343_3155516 chr2RHet_3137389_3137488;chr2RHet_3169169_3169264 100.00 100.00 100.00 98.15 100.00 100.00 100.00 98.70 98.94 100.00 100.00 98.36 100.00 97.62 97.22 98.72 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 95.45 96.97 94.74 100.00 90.00 95.00 97.78 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 95.83 95.00 100.00 98.86 100.00 100.00 96.00 88.24 100.00 100.00 100.00 100.00 100.00 N intron_retention CG8531,RI_chr2R_10144869_10144912 chr2R + chr2R_10145138_10145276 chr2R_10145137_10145138;chr2R_10145276_10145277 chr2R_10144926_10145137;chr2R_10145277_10145393 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 79.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 79.00 100.00 100.00 92.78 100.00 100.00 100.00 89.66 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.88 91.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette Rm62 chr3R - chr3R_1830849_1833758 chr3R_1830849_1830927;chr3R_1831020_1833758 chr3R_1830928_1831019 chr3R_1829739_1830848;chr3R_1833759_1834028 5.72 5.70 5.03 8.16 6.75 5.72 4.81 5.89 5.49 9.03 3.47 3.75 11.94 5.46 4.24 3.89 6.32 4.07 6.59 4.76 3.23 21.43 4.60 7.15 4.97 2.36 7.82 10.50 3.50 5.91 6.11 8.25 6.05 4.23 5.95 5.24 9.66 6.77 5.93 5.62 6.19 4.20 5.17 9.81 6.21 6.32 7.22 6.77 3.66 8.73 5.72 6.24 4.29 5.71 5.04 7.39 5.49 5.68 K intron_retention CG6845,I_chr3L_148414_148489 chr3L + chr3L_147399_147452 chr3L_147398_147399;chr3L_147452_147453 chr3L_147138_147398;chr3L_147453_147646 17.65 27.59 10.20 28.12 13.16 15.15 17.24 10.64 15.73 7.14 18.75 19.28 11.76 21.43 10.87 18.18 20.59 2.38 14.04 12.64 15.15 19.05 33.33 16.00 35.71 20.00 26.67 33.33 23.33 30.00 15.71 30.00 37.04 16.28 15.00 82.61 20.00 17.65 19.23 13.04 31.03 15.66 13.95 7.14 19.05 24.24 9.52 13.64 14.44 25.00 13.79 16.67 25.00 26.67 16.39 19.05 17.65 15.38 K alternative_donor stck,I_chr3R_4184313_4184380,I_chr3R_4184660_4184730 chr3R + chr3R_4182496_4184192;chr3R_4183179_4184192 chr3R_4182818_4184192 chr3R_4184193_4184312;chr3R_4182427_4182495 50.00 57.14 44.44 50.00 66.67 50.00 61.54 50.00 52.17 66.67 57.14 43.75 60.00 50.00 62.50 50.00 71.43 33.33 37.50 33.33 50.00 37.50 40.00 55.56 50.00 55.56 42.86 40.00 33.33 33.33 33.33 33.33 25.00 53.33 50.00 25.00 60.00 66.67 44.44 37.50 25.00 57.89 50.00 33.33 20.00 57.14 50.00 25.00 58.82 60.00 44.44 71.43 40.00 40.00 63.64 60.00 60.00 33.33 K intron_retention Src42A chr2R + chr2R_1896690_1896775 chr2R_1896689_1896690;chr2R_1896775_1896776 chr2R_1896568_1896689;chr2R_1896776_1896860 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette dlg1,I_chrX_11290137_11290410,I_chrX_11298230_11299306 chrX + chrX_11290137_11299306 chrX_11290137_11291857;chrX_11291946_11292002;chrX_11292217_11292278;chrX_11292693_11292752;chrX_11292856_11293774;chrX_11293850_11299306 chrX_11291858_11291945;chrX_11292003_11292216;chrX_11292279_11292692;chrX_11292753_11292855;chrX_11293775_11293849 chrX_11290037_11290136;chrX_11299307_11299406 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor Nipped-B,I_chr2R_580989_582555,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_580989_582623 chr2R_580989_582555 chr2R_580930_580988;chr2R_582624_582655 1.56 0.00 3.23 4.44 6.67 3.23 4.46 0.00 0.98 NA 3.70 1.39 0.00 0.00 0.00 2.63 4.76 0.00 3.45 1.67 0.00 0.00 2.86 3.45 4.76 3.45 5.00 4.55 0.00 0.00 1.72 0.00 NA 1.25 4.76 0.00 0.00 NA NA 5.71 NA 1.56 0.00 0.00 NA 0.00 NA 0.00 3.66 0.00 3.12 3.33 NA 0.00 0.00 0.00 3.33 5.56 K jcn_only_AD Pif1B,Pif1A,I_chr3R_4624232_4625183 chr3R - chr3R_4612648_4618825 chr3R_4612648_4616230 chr3R_4612420_4612647 0.00 2.08 0.00 2.22 NA 4.00 0.00 1.61 0.00 NA 2.70 0.00 0.00 3.70 3.23 1.64 3.85 0.00 4.26 0.00 2.56 5.41 0.00 0.00 0.00 2.00 0.00 0.00 1.85 0.00 0.00 NA NA 2.94 0.00 0.00 2.22 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 NA 0.00 0.00 2.56 0.00 0.00 0.00 K intron_retention scrib,I_chr3R_22362324_22363015,I_chr3R_22381374_22399575,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22362120_22363092 chr3R_22362119_22362120;chr3R_22363092_22363093 chr3R_22362112_22362119;chr3R_22363093_22363115 51.61 42.86 45.00 65.00 62.50 57.89 60.00 48.08 53.93 50.00 53.33 50.00 63.64 51.61 54.55 58.82 50.00 53.57 54.84 40.58 41.18 28.89 28.00 66.67 55.56 60.87 60.00 NA 52.94 36.84 57.58 25.00 46.32 53.57 43.48 35.71 33.33 38.46 50.00 43.33 58.33 58.73 62.07 45.83 47.83 53.85 41.67 39.34 62.00 54.55 45.45 50.00 NA NA 62.16 NA 54.55 40.00 K jcn_only_AD grp,REI_chr2L_16696770_16697500,I_chr2L_16697644_16698961,R_chr2L_16698072_16698138 chr2L + chr2L_16696763_16697500 chr2L_16696770_16697500 chr2L_16697501_16697600;chr2L_16696670_16696762 3.41 2.13 4.04 2.67 1.23 1.37 1.25 3.97 3.05 0.00 0.00 0.51 3.28 1.67 7.87 6.12 0.00 5.63 1.47 5.53 1.79 3.96 3.78 3.33 4.88 4.40 5.63 5.26 5.81 3.62 17.00 3.41 2.45 1.56 2.44 3.17 2.66 7.03 2.87 6.94 2.47 3.90 3.33 3.57 2.73 2.10 4.72 3.51 5.36 3.81 4.26 4.94 5.21 6.87 3.03 2.80 6.78 2.00 K jcn_only_AD Adk3 chr3R - chr3R_6714066_6714794 chr3R_6714066_6714787 chr3R_6713005_6714065;chr3R_6714795_6715357 80.00 NA NA 80.00 NA NA NA 72.41 80.00 NA NA 80.00 NA NA 50.00 85.71 NA NA 81.82 80.77 NA NA NA NA NA NA NA NA NA NA NA NA NA 76.92 NA NA NA NA NA NA NA 93.33 NA NA NA NA 88.89 NA 78.38 NA NA NA 95.45 NA NA NA 72.41 86.36 K intron_retention srp,I_chr3R_11825782_11827473,I_chr3R_11826508_11826910 chr3R + chr3R_11825782_11827473 chr3R_11825781_11825782;chr3R_11827473_11827474 chr3R_11825682_11825781;chr3R_11827474_11827573 60.00 NA NA 25.71 NA NA 60.00 80.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 21.88 64.71 42.86 NA NA 87.50 72.73 43.48 66.67 NA NA 62.50 NA 50.00 53.33 57.14 60.00 46.15 40.00 61.54 77.78 NA 90.91 NA NA NA 44.44 60.00 50.00 63.64 NA NA NA NA NA NA NA K intron_retention RecQ4,Nmt chr3L - chr3L_8164153_8164213 chr3L_8164152_8164153;chr3L_8164213_8164214 chr3L_8163802_8164152;chr3L_8164214_8164530 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 NA 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.00 0.00 0.00 6.67 10.71 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA par-1,mei-W68,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15344481_15347299 chr2R_15344481_15345476 chr2R_15343700_15344480 5.31 0.00 9.30 4.11 4.35 6.25 4.17 1.04 9.80 59.09 2.78 3.80 1.52 8.06 4.00 4.12 7.27 2.38 3.08 7.69 6.06 5.36 8.89 5.71 2.94 0.00 0.00 NA 11.11 5.26 4.92 NA 1.72 1.11 0.00 8.00 5.56 8.33 8.00 5.71 0.00 5.56 5.88 8.00 NA 8.33 4.55 1.64 4.88 18.18 13.73 16.22 14.29 NA 3.39 0.00 NA 5.66 K alternative_last_exon sick chr2L + chr2L_19926513_19928622 chr2L_19926513_19926620 chr2L_19928623_19928996 chr2L_19926621_19926689 chr2L_19926210_19926512 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon fru chr3R - chr3R_14252889_14256553;chr3R_14243023_14256553 chr3R_14248905_14256553 chr3R_14251658_14252888;chr3R_14241177_14243022 chr3R_14245340_14248904 chr3R_14256554_14256686 26.39 25.00 25.30 40.88 25.37 27.14 30.70 32.90 30.56 21.43 23.81 25.44 33.01 28.95 27.16 31.71 28.77 24.18 28.26 28.87 26.23 31.97 27.42 24.47 28.00 25.33 25.84 28.57 27.71 29.03 28.99 22.00 27.27 29.79 26.39 34.41 27.59 24.68 26.17 26.62 22.45 28.32 29.41 25.56 18.03 25.00 24.64 26.12 28.26 20.75 25.45 26.00 20.69 21.43 28.57 24.53 20.41 19.59 K alternative_acceptor bon chr3R + chr3R_16436233_16436297 chr3R_16436233_16436294 chr3R_16436109_16436232;chr3R_16436298_16437346 95.24 92.86 85.71 85.19 100.00 100.00 92.86 85.71 97.50 90.00 90.91 100.00 85.71 100.00 93.75 95.24 100.00 94.44 95.24 97.37 100.00 92.86 95.24 91.67 100.00 100.00 92.31 NA 100.00 92.86 93.33 NA 86.96 90.48 100.00 100.00 90.91 100.00 100.00 100.00 77.78 93.75 100.00 100.00 88.89 92.86 100.00 100.00 96.30 100.00 100.00 100.00 NA NA 94.74 86.67 88.89 94.12 K alternative_acceptor rumi,I_chr3R_18576057_18576110 chr3R - chr3R_18576057_18576110 chr3R_18576061_18576110 chr3R_18576111_18576210;chr3R_18575957_18576056 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 98.25 96.55 96.30 100.00 97.50 100.00 95.83 100.00 98.63 100.00 100.00 98.00 100.00 96.15 100.00 100.00 100.00 97.67 100.00 100.00 100.00 97.73 100.00 100.00 97.30 97.62 97.14 97.44 95.92 97.06 100.00 100.00 97.78 100.00 100.00 100.00 100.00 98.51 97.44 97.96 96.55 95.45 100.00 100.00 100.00 100.00 97.30 K intron_retention CG17841,I_chrX_10264610_10275691,CG2898 chrX + chrX_10262793_10275691 chrX_10262792_10262793;chrX_10275691_10275692 chrX_10262023_10262792;chrX_10275692_10275791 1.60 1.74 1.52 0.89 1.59 0.85 2.06 2.91 1.80 5.80 0.82 2.92 0.00 1.90 1.96 2.72 0.96 5.49 2.59 3.02 3.64 1.57 1.78 0.78 0.00 1.46 3.23 3.54 4.80 0.00 1.39 0.00 0.00 2.04 0.00 0.00 1.01 1.65 0.55 1.73 1.03 2.02 2.59 0.72 1.60 2.31 0.00 0.00 2.24 0.00 0.00 1.94 3.39 0.00 2.47 0.00 3.95 1.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2816013 chr2R_2813804_2813977;chr2R_2814097_2814174;chr2R_2814327_2816013 chr2R_2813978_2814096;chr2R_2814175_2814326 chr2R_2813704_2813803;chr2R_2816014_2816113 92.86 83.33 100.00 73.33 85.71 100.00 100.00 85.71 100.00 100.00 85.71 100.00 80.00 100.00 91.67 100.00 100.00 100.00 83.33 94.74 85.71 95.83 91.67 100.00 91.67 85.71 92.31 85.71 90.00 92.86 100.00 100.00 86.67 92.86 100.00 83.33 94.74 92.86 86.96 92.86 91.67 100.00 100.00 88.24 86.36 94.44 78.57 92.86 94.44 100.00 94.12 83.33 100.00 92.86 88.89 95.45 100.00 93.33 N jcn_only_AA Adgf-A,Msi,F_chr3L_17749926_17757161 chr3L - chr3L_17749920_17757161;chr3L_17756677_17757161;chr3L_17747526_17757161 chr3L_17747522_17757161 chr3L_17757162_17757241 26.18 28.51 29.51 25.70 29.05 27.79 26.18 26.71 26.75 33.33 27.89 25.83 25.87 25.44 24.37 25.58 23.15 22.81 26.17 25.05 25.44 25.37 26.01 23.64 30.85 25.80 21.95 19.23 28.24 27.98 20.90 23.54 23.09 28.49 29.38 24.57 28.14 27.68 25.75 30.06 26.37 26.31 32.68 27.99 23.87 26.84 29.26 28.82 23.56 19.54 29.66 28.49 23.54 21.92 23.36 26.61 29.78 28.66 K intron_retention CG32685,CREI_chrX_9967445_9972518 chrX - chrX_9967445_9972518 chrX_9967444_9967445;chrX_9972518_9972519 chrX_9967345_9967444;chrX_9972519_9972618 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 K jcn_only_AD CG34413,RI_chr2R_20769295_20770153,I_chr2R_20771136_20772048,I_chr2R_20773500_20774745 chr2R + chr2R_20769150_20770153;chr2R_20769206_20770153;chr2R_20769295_20770153 chr2R_20769471_20770153 chr2R_20770154_20770253;chr2R_20769141_20769149 4.38 4.44 4.17 4.42 4.88 4.84 6.73 10.28 4.12 3.33 1.25 3.36 2.70 4.35 1.69 11.11 2.73 0.00 2.47 6.47 2.30 5.00 10.84 7.14 2.74 4.30 9.64 1.96 3.12 7.32 5.41 NA 7.50 2.92 17.95 7.69 5.70 8.14 2.65 7.10 NA 2.59 3.66 3.08 2.63 3.23 5.00 7.32 3.08 7.81 14.67 4.17 7.69 16.00 3.47 4.17 8.93 NA K jcn_only_AA drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389400_9390195;chr2R_9389714_9390195;chr2R_9389430_9390195 chr2R_9389597_9390195 chr2R_9390196_9390251;chr2R_9389318_9389399 95.20 89.29 95.24 88.89 93.10 97.44 91.92 95.89 96.33 97.37 93.75 93.67 96.36 88.10 95.38 93.81 90.48 95.89 98.53 96.50 92.86 89.58 95.60 89.23 95.83 100.00 93.15 89.83 97.73 92.86 95.16 96.88 84.85 97.78 94.83 97.87 91.23 96.77 96.15 90.43 NA 95.92 86.11 98.28 96.67 92.73 94.87 96.67 94.00 96.61 97.01 94.34 100.00 97.22 94.44 94.64 95.00 97.96 K cassette Nos,I_chr2L_10826086_10826539 chr2L - chr2L_10826086_10831328 chr2L_10826086_10830599;chr2L_10830715_10831328 chr2L_10830600_10830714 chr2L_10826011_10826085;chr2L_10831329_10831601 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA 85.71 NA NA 100.00 NA NA NA NA NA NA NA K alternative_donor vir-1,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,noncoding_2764,I_chr2L_12421830_12423260 chr2L - chr2L_12421830_12423260;chr2L_12421830_12423333;chr2L_12421830_12423278 chr2L_12421830_12423322 chr2L_12421816_12421829;chr2L_12423334_12423360 90.69 88.50 91.67 90.46 91.60 90.69 90.20 87.43 89.55 93.27 87.04 92.46 89.96 86.93 90.27 93.46 86.41 92.31 88.31 93.32 86.61 90.16 90.34 92.67 89.39 90.78 88.39 90.27 90.70 89.93 93.02 93.87 92.11 88.89 92.76 83.78 89.89 92.45 93.67 89.50 91.39 90.63 88.69 91.69 90.44 92.95 93.26 93.46 91.28 89.67 91.90 89.42 91.49 90.91 92.11 89.75 91.64 93.27 K alternative_donor sec8,I_chr3R_1583812_1583897 chr3R - chr3R_1583812_1583897 chr3R_1583812_1583870 chr3R_1583712_1583811;chr3R_1583898_1583997 100.00 100.00 100.00 97.22 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 98.21 100.00 97.06 98.15 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 96.97 100.00 100.00 96.43 96.67 100.00 100.00 K jcn_only_AA CG6686 chr2L - chr2L_11987513_11987695;chr2L_11987388_11987695 chr2L_11987495_11987695 chr2L_11987696_11988035 5.77 6.19 8.22 12.31 0.00 4.62 1.85 4.76 5.44 7.94 0.00 5.47 4.17 4.76 0.92 1.32 1.92 7.14 15.22 4.61 7.02 22.62 7.55 6.16 11.49 15.09 2.94 1.70 8.28 8.49 11.22 5.66 16.09 5.77 3.17 6.25 5.74 4.23 4.49 7.05 5.33 4.24 4.62 6.38 14.71 5.80 4.76 11.88 5.56 7.56 6.62 2.80 2.67 5.56 8.14 8.26 10.00 11.76 K intron_retention skap,I_chr3R_4766829_4767129,CRE_chr3R_4766916_4767129 chr3R + chr3R_4766912_4767129 chr3R_4766911_4766912;chr3R_4767129_4767130 chr3R_4766816_4766911;chr3R_4767130_4767229 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5706 chr3R - chr3R_20076398_20076454 chr3R_20076397_20076398;chr3R_20076454_20076455 chr3R_20076167_20076397;chr3R_20076455_20077800 0.00 0.00 0.00 1.32 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.29 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 2.15 0.92 0.00 0.00 2.04 4.11 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 K jcn_only_AD Crag,I_chrX_8487355_8487512,I_chrX_8494280_8494352 chrX + chrX_8486625_8487512 chrX_8487355_8487512 chrX_8487513_8487612;chrX_8486279_8486624 2.08 0.00 1.89 2.08 0.00 1.61 4.76 5.17 3.09 6.06 0.00 6.35 0.00 2.13 0.00 7.41 6.25 2.17 5.41 1.56 0.00 6.06 1.32 1.27 0.00 2.33 0.00 NA 1.69 1.96 4.76 0.00 1.28 5.80 3.08 0.00 2.60 2.00 0.00 3.90 2.08 3.39 2.70 4.88 3.92 2.04 2.78 0.82 1.16 6.25 7.58 4.88 0.00 3.03 0.00 NA 0.00 0.00 K intron_retention CG31156,EFI_chr3R_18436373_18436443 chr3R - chr3R_18436922_18436973 chr3R_18436921_18436922;chr3R_18436973_18436974 chr3R_18436740_18436921;chr3R_18436974_18437173 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG15099,CG15100 chr2R - chr2R_14732841_14732898 chr2R_14732840_14732841;chr2R_14732898_14732899 chr2R_14731608_14732840;chr2R_14732899_14733077 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.19 0.00 0.00 NA 0.00 NA 0.00 2.78 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 K intron_retention CG32343,RI_chr3L_326725_326866 chr3L - chr3L_327080_327134 chr3L_327079_327080;chr3L_327134_327135 chr3L_326867_327079;chr3L_327135_327488 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.38 NA 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.94 0.00 0.00 5.71 K jcn_only_AD Sans,RI_chr2R_8825985_8826072,I_chr2R_8826501_8826591 chr2R + chr2R_8824595_8825904;chr2R_8824493_8825904 chr2R_8824602_8825904 chr2R_8825905_8825980;chr2R_8824445_8824492 59.28 NA NA NA NA NA NA NA 65.00 NA NA NA NA NA NA NA NA NA NA 61.90 NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 56.67 K intron_retention Psa,I_chr3L_1518053_1518213 chr3L + chr3L_1517957_1518176 chr3L_1517956_1517957;chr3L_1518176_1518177 chr3L_1517953_1517956;chr3L_1518177_1518796 6.67 4.44 7.32 8.82 6.90 0.00 14.29 3.80 9.18 8.00 6.67 10.94 3.57 4.76 10.00 7.46 5.26 12.20 4.26 4.23 11.54 1.45 6.12 8.16 3.33 10.81 9.80 3.92 10.34 2.99 6.67 10.26 3.81 8.86 4.35 9.80 9.43 0.00 0.00 4.09 8.89 7.41 6.90 9.09 3.77 5.66 6.25 6.48 4.76 2.63 0.00 11.36 6.45 0.00 5.26 6.67 7.69 7.45 K jcn_only_AD CG42550 chr3R - chr3R_3826595_3826647 chr3R_3826595_3826641 chr3R_3826527_3826594;chr3R_3826648_3826710 15.01 17.24 13.33 20.00 27.27 NA 14.63 11.86 17.65 NA 28.00 14.29 16.67 23.81 14.29 9.43 14.29 8.00 12.50 14.29 NA NA 8.33 16.13 27.27 25.93 13.51 NA NA 18.18 12.50 20.83 NA 17.54 NA NA NA 27.27 4.00 18.75 NA 7.04 16.67 NA 19.05 18.18 7.69 NA 10.17 11.54 15.38 30.30 NA 3.12 5.71 25.00 7.69 NA K jcn_only_AD zip,I_chr2R_20878796_20879147 chr2R - chr2R_20898140_20898992;chr2R_20898140_20898898 chr2R_20898140_20898834 chr2R_20897903_20898139;chr2R_20898993_20898996 26.48 32.84 19.83 19.13 23.25 26.48 20.19 19.37 17.42 30.11 15.35 20.50 23.35 20.53 23.21 23.15 15.71 13.79 15.44 23.67 16.73 48.69 67.93 70.00 62.86 25.44 79.31 41.33 40.25 34.08 18.66 24.07 21.07 21.93 43.98 51.76 44.97 64.95 46.40 38.69 28.81 20.06 18.29 41.15 18.60 28.75 59.80 29.07 21.67 56.25 70.56 55.75 50.56 82.81 20.92 53.93 41.18 19.22 N alternative_acceptor Moca-cyp chr3R + chr3R_24167182_24167348;chr3R_24167182_24167249;chr3R_24167182_24167906;chr3R_24167182_24167260 chr3R_24167182_24167243 chr3R_24167094_24167181;chr3R_24167907_24167936 6.45 7.14 8.82 11.54 8.70 5.41 10.26 8.20 9.72 7.69 11.76 6.45 10.71 13.79 7.89 7.02 10.34 8.33 11.11 6.32 9.09 3.92 5.63 5.77 6.45 10.00 5.17 6.25 4.35 5.56 1.54 4.17 2.48 9.52 6.38 4.26 3.08 6.98 3.23 5.68 3.92 8.33 15.00 6.45 1.92 3.45 6.52 12.75 8.70 7.32 4.76 5.71 6.06 6.06 10.26 6.38 4.55 2.70 K intron_retention polo,I_chr3L_20303509_20305486,I_chr3L_20306985_20307177 chr3L + chr3L_20305712_20305778 chr3L_20305711_20305712;chr3L_20305778_20305779 chr3L_20305283_20305711;chr3L_20305779_20306576 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.49 2.22 0.00 0.00 0.00 0.00 0.00 0.00 2.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Inos,I_chr2R_3344353_3345211,noncoding_4874 chr2R - chr2R_3344353_3346113 chr2R_3344352_3344353;chr2R_3346113_3346114 chr2R_3344253_3344352;chr2R_3346114_3346215 0.70 0.74 0.66 0.80 0.42 0.94 0.59 0.61 0.60 0.62 0.93 1.14 0.39 0.85 0.40 0.90 0.47 0.81 0.70 0.56 0.52 2.32 0.77 0.65 0.43 0.51 1.19 1.27 4.15 0.74 0.62 0.88 0.59 0.68 0.59 1.31 0.76 0.47 0.78 0.84 0.47 0.71 0.34 1.10 0.53 0.64 0.81 0.77 0.76 1.22 0.92 0.66 0.49 0.62 0.53 0.56 0.92 1.06 K intron_retention MRG15,l(3)neo43,F_chr3R_11104164_11104239 chr3R - chr3R_11103452_11103507 chr3R_11103451_11103452;chr3R_11103507_11103508 chr3R_11103336_11103451;chr3R_11103508_11103622 0.00 0.00 3.23 0.00 3.12 0.00 0.00 4.44 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 2.13 0.00 0.00 0.00 4.35 9.30 27.78 8.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 2.08 0.00 0.00 3.51 1.82 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 K intron_retention Trf2,I_chrX_8318346_8318408 chrX + chrX_8321921_8321979 chrX_8321920_8321921;chrX_8321979_8321980 chrX_8320000_8321920;chrX_8321980_8322238 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 K alternative_donor noncoding_21259,REI_chrX_828715_831973,TRAM,I_chrX_829418_830362,I_chrX_829743_831973 chrX + chrX_829743_830362 chrX_829872_830362 chrX_830363_830462;chrX_829643_829742 4.84 4.29 4.69 5.26 3.39 4.84 3.95 3.33 5.48 4.88 2.78 3.70 1.89 1.85 6.41 5.06 3.92 5.00 4.23 5.22 1.96 5.19 3.45 3.09 4.65 3.33 6.45 2.78 14.58 6.15 6.82 9.80 2.68 4.49 6.06 6.00 6.12 5.88 6.74 4.95 6.00 4.41 4.17 2.38 4.88 5.26 8.47 2.13 2.99 5.33 6.02 4.35 5.95 3.77 2.15 5.97 6.19 3.05 K jcn_only_AD CG4774,RI_chr3R_21511706_21511778 chr3R - chr3R_21511706_21512036 chr3R_21511706_21511778 chr3R_21511606_21511705;chr3R_21512037_21512588 0.94 1.27 0.00 0.00 0.00 0.00 0.90 1.77 0.68 2.78 0.00 0.00 0.00 1.75 0.00 1.56 0.00 0.00 0.00 0.00 0.00 1.01 0.85 0.00 3.39 0.00 3.16 3.45 1.32 1.05 0.00 1.49 1.54 1.01 0.00 2.60 0.00 0.94 1.48 0.88 5.71 0.00 0.00 1.33 2.02 0.96 0.00 1.41 0.00 3.70 1.83 1.59 2.65 0.97 0.00 1.89 0.00 1.11 K alternative_acceptor Fer1HCH,I_chr3R_26212319_26213496,I_chr3R_26212834_26213185,I_chr3R_26213132_26213185 chr3R - chr3R_26213365_26213496;chr3R_26213325_26213496 chr3R_26213273_26213496 chr3R_26213497_26213534;chr3R_26213186_26213272 46.15 50.70 49.46 55.57 41.39 44.11 31.81 44.71 43.40 51.02 44.74 48.58 28.89 41.31 49.37 41.87 44.97 51.70 47.01 52.06 46.97 46.70 48.96 43.00 36.14 42.08 35.10 37.84 35.56 46.15 46.53 37.93 49.70 50.36 38.55 58.88 50.24 57.14 48.21 35.08 25.00 50.57 45.35 49.33 43.06 36.86 50.43 29.91 54.75 52.35 38.24 50.32 53.27 50.00 45.29 56.40 45.73 39.26 K intron_retention mud chrX + chrX_14148322_14149491 chrX_14148321_14148322;chrX_14149491_14149492 chrX_14147213_14148321;chrX_14149492_14149584 12.37 18.52 9.43 14.29 13.51 14.29 25.00 7.69 7.08 26.32 20.00 10.53 7.32 10.26 7.32 10.94 8.11 11.11 6.52 16.67 12.50 10.81 28.95 21.74 33.33 8.00 26.83 NA 8.82 9.09 12.77 6.78 0.00 7.58 17.65 24.14 16.67 18.18 17.07 9.43 8.82 10.71 3.45 6.45 12.24 12.50 23.08 7.41 14.49 10.53 10.87 17.39 25.00 22.73 15.56 16.33 28.57 6.45 K intron_retention Socs16D chrX - chrX_17716384_17716459 chrX_17716383_17716384;chrX_17716459_17716460 chrX_17714842_17716383;chrX_17716460_17716592 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention MRP,F_chr2L_12727117_12736035 chr2L + chr2L_12729406_12737958 chr2L_12729405_12729406;chr2L_12737958_12737959 chr2L_12729189_12729405;chr2L_12737959_12738176 92.31 90.00 NA 91.67 NA NA 92.31 100.00 95.45 NA NA 94.12 88.89 100.00 90.00 100.00 NA NA 100.00 90.91 87.50 NA 95.65 90.00 NA NA 73.33 83.33 NA NA NA NA 100.00 90.91 NA 90.00 93.75 NA 85.71 94.44 NA 100.00 88.89 92.86 NA NA NA 100.00 100.00 NA 95.65 91.67 NA NA 83.33 NA NA NA K alternative_acceptor MED10,I_chr3L_16225377_16225479 chr3L + chr3L_16225424_16225485 chr3L_16225424_16225479 chr3L_16225129_16225423;chr3L_16225486_16225579 100.00 100.00 100.00 97.37 100.00 95.83 97.83 98.31 98.15 100.00 95.65 97.92 100.00 100.00 97.30 97.56 100.00 96.30 100.00 98.21 96.00 100.00 100.00 96.97 94.12 97.37 97.14 96.55 100.00 96.55 100.00 95.00 100.00 97.96 100.00 95.65 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 K jcn_only_AA pnt,I_chr3R_19117170_19117217,I_chr3R_19118404_19119566,I_chr3R_19139278_19163617,I_chr3R_19181524_19181702 chr3R - chr3R_19117151_19117217 chr3R_19117170_19117217 chr3R_19117218_19117317;chr3R_19117070_19117150 0.41 0.76 0.00 1.34 0.49 0.43 1.51 0.60 0.00 0.00 0.40 0.89 0.85 0.40 0.72 0.30 0.00 0.00 0.00 0.82 0.00 0.44 0.28 0.00 1.40 0.34 0.35 0.00 0.74 0.85 0.00 1.06 0.23 0.76 0.00 0.68 0.00 0.00 0.31 0.29 0.68 0.76 0.90 0.00 0.58 0.55 1.29 0.42 0.75 1.03 2.09 0.00 0.41 0.39 0.29 0.37 0.00 2.19 K jcn_only_AA Sap47,I_chr3R_11761076_11761674,I_chr3R_11761436_11761674,F_chr3R_11761635_11761698,E_chr3R_11761635_11761703 chr3R + chr3R_11761307_11761561;chr3R_11761307_11761674;chr3R_11761307_11761703 chr3R_11761307_11761698 chr3R_11761299_11761306;chr3R_11761704_11761774 0.00 NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA NA NA K intron_retention CG34413,RI_chr2R_20769295_20770153,I_chr2R_20771136_20772048,I_chr2R_20773500_20774745 chr2R + chr2R_20769295_20770153 chr2R_20769294_20769295;chr2R_20770153_20770154 chr2R_20769195_20769294;chr2R_20770154_20770253 81.53 77.78 88.89 91.67 NA NA 91.67 85.71 81.25 NA NA 100.00 NA 72.73 75.00 78.57 NA 87.50 NA 73.33 NA 100.00 76.47 53.85 NA NA 100.00 70.00 68.42 NA 81.82 NA 93.33 60.00 NA 90.91 88.89 NA 46.15 81.25 NA 71.43 NA NA NA NA NA NA 90.91 NA 91.67 NA NA NA NA NA NA NA K jcn_only_AD foi,I_chr3L_8524905_8524976 chr3L + chr3L_8521881_8523659 chr3L_8521898_8523659 chr3L_8523660_8524249;chr3L_8521860_8521880 29.20 NA 30.23 29.73 22.22 34.88 52.17 26.09 30.49 NA 29.79 36.36 NA 28.57 40.00 28.57 24.32 59.38 35.90 28.10 34.15 50.82 NA NA NA 18.52 NA NA 60.71 NA 28.57 25.00 18.75 28.99 NA NA NA NA NA NA NA 29.41 22.22 NA NA NA NA 28.57 33.33 NA NA NA NA NA 23.68 NA NA 26.67 K intron_retention CrebB-17A,I_chrX_18261213_18269281,I_chrX_18265640_18266039,I_chrX_18265640_18266060,I_chrX_18265982_18266063 chrX + chrX_18265216_18266063 chrX_18265215_18265216;chrX_18266063_18266064 chrX_18265206_18265215;chrX_18266064_18266139 78.18 78.12 68.97 59.52 61.90 67.86 68.42 71.74 75.44 90.91 95.45 76.92 76.19 72.00 78.12 70.45 84.21 95.00 75.56 77.59 84.62 73.08 73.81 88.89 82.76 84.38 78.05 86.36 72.22 90.91 78.57 90.91 80.95 78.18 81.48 91.89 63.64 79.31 85.29 84.78 92.86 80.85 82.61 85.71 69.23 75.76 80.77 85.71 73.02 77.42 80.00 95.00 69.57 75.00 70.00 66.67 89.47 84.62 K jcn_only_AD CG4709,RI_chr2L_9954545_9954595 chr2L + chr2L_9954535_9954595 chr2L_9954545_9954595 chr2L_9954596_9954601;chr2L_9954445_9954534 12.14 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Nat1 chrX + chrX_19377638_19377716 chrX_19377637_19377638;chrX_19377716_19377717 chrX_19376985_19377637;chrX_19377717_19378679 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 8.22 0.00 0.79 1.39 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 2.50 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG14741 chr3R - chr3R_7897251_7898049 chr3R_7897251_7898007 chr3R_7897104_7897250;chr3R_7898050_7898194 79.68 71.73 81.56 76.14 81.71 78.97 81.75 85.39 82.71 78.57 89.35 79.68 89.03 78.28 80.70 84.33 76.61 88.29 82.19 81.63 85.56 85.92 65.13 64.32 66.09 80.63 65.71 71.15 89.52 82.14 82.09 88.20 89.83 82.63 76.27 75.10 70.78 68.02 70.52 75.10 88.93 82.72 77.45 78.67 87.32 89.14 68.31 92.94 82.84 73.68 67.52 73.24 78.62 63.38 77.46 69.86 68.54 92.72 K intron_retention Pcf11 chr2R - chr2R_10749627_10749699 chr2R_10749626_10749627;chr2R_10749699_10749700 chr2R_10748887_10749626;chr2R_10749700_10750173 8.33 5.56 0.00 10.81 3.57 0.00 14.29 5.13 9.62 4.76 6.67 12.20 NA 8.70 11.43 13.64 8.70 0.00 8.33 4.17 0.00 0.00 11.90 2.56 17.86 6.67 15.15 13.79 10.42 3.45 5.56 5.71 8.93 5.26 9.52 25.81 7.41 10.53 8.51 8.89 10.87 9.26 0.00 3.57 15.38 15.91 5.00 7.69 4.88 0.00 4.65 0.00 NA 9.09 11.76 14.71 6.25 14.29 K intron_retention Chc,I_chrX_15728946_15729357 chrX - chrX_15722916_15722984 chrX_15722915_15722916;chrX_15722984_15722985 chrX_15722749_15722915;chrX_15722985_15727286 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.20 0.48 0.00 0.00 0.00 0.00 0.00 0.35 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.49 1.60 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31619 chr2L + chr2L_21711411_21712789 chr2L_21711410_21711411;chr2L_21712789_21712790 chr2L_21711315_21711410;chr2L_21712790_21712966 94.74 92.86 100.00 85.19 91.67 86.67 100.00 92.86 82.86 80.00 NA 96.15 NA 100.00 90.91 94.12 100.00 100.00 90.00 96.30 NA 90.00 95.24 94.44 100.00 93.33 93.33 NA NA 94.74 88.00 100.00 95.45 86.36 100.00 100.00 93.55 90.48 95.45 94.74 100.00 91.89 88.89 95.24 94.44 92.31 100.00 100.00 96.43 88.89 100.00 100.00 91.67 100.00 100.00 90.00 100.00 100.00 K intron_retention CG34413,I_chr2R_20771136_20772048,I_chr2R_20772104_20773774,RI_chr2R_20772104_20774745,C_chr2R_20772691_20773500,I_chr2R_20773500_20774745 chr2R + chr2R_20773500_20774745 chr2R_20773499_20773500;chr2R_20774745_20774746 chr2R_20773400_20773499;chr2R_20774746_20774845 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.00 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 98.97 100.00 98.68 100.00 100.00 100.00 100.00 100.00 100.00 98.55 100.00 100.00 100.00 99.15 100.00 99.42 100.00 98.63 100.00 100.00 100.00 98.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.41 98.21 K alternative_last_exon 4EHP,RI_chr3R_19927769_19928262,Syx1A chr3R - chr3R_19890053_19932546 chr3R_19927769_19932546 chr3R_19889904_19890052 chr3R_19927017_19927768 chr3R_19932547_19933006 14.50 9.09 10.00 14.29 28.57 12.50 12.50 22.22 14.81 NA 25.00 15.79 20.00 27.27 28.57 27.27 25.00 20.00 30.00 14.71 78.95 25.00 20.00 8.33 10.00 14.29 6.67 40.00 20.00 22.22 10.00 11.11 5.26 5.56 16.67 28.57 0.00 25.00 11.76 13.33 12.50 15.00 14.29 15.38 14.29 7.69 6.25 15.38 9.52 23.08 18.75 25.00 10.00 8.33 10.00 6.25 14.29 5.56 K alternative_last_exon CG8043,CG11755 chr3R + chr3R_4502770_4503994 chr3R_4502770_4502843,chr3R_4502770_4502834,chr3R_4502770_4502817,chr3R_4502770_4502810 chr3R_4503995_4504677 chr3R_4502844_4503955 chr3R_4502645_4502769 74.00 80.65 68.33 58.02 74.00 76.47 73.17 64.63 70.48 84.85 74.47 70.19 68.09 71.11 72.58 57.33 69.05 72.55 69.23 71.43 77.08 79.10 62.34 75.32 69.39 72.73 75.32 81.97 82.54 80.70 70.69 75.56 82.67 68.75 75.56 86.21 84.95 84.93 79.31 76.09 68.63 71.96 71.79 76.47 82.09 72.00 77.14 76.47 67.33 67.19 74.36 74.42 83.87 82.46 68.18 73.42 73.42 78.26 K intron_retention I_chr2R_7922306_7922992,128up,RpIII128 chr2R + chr2R_7924970_7925101 chr2R_7924969_7924970;chr2R_7925101_7925102 chr2R_7924828_7924969;chr2R_7925102_7925222 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 2.33 3.03 1.79 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention spz chr3R - chr3R_22891045_22891524 chr3R_22891044_22891045;chr3R_22891524_22891525 chr3R_22890792_22891044;chr3R_22891525_22891751 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.18 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.44 1.27 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Gel,I_chr3R_63540_64006,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_64100_64291 chr3R_64099_64100;chr3R_64291_64292 chr3R_64025_64099;chr3R_64292_64487 0.00 0.00 0.55 0.00 0.65 0.00 1.95 1.13 0.00 3.33 0.74 1.51 1.23 0.00 0.00 1.95 0.00 0.00 0.00 0.00 1.54 2.33 1.16 0.78 0.00 0.68 2.24 0.00 0.00 0.00 1.53 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 2.37 3.17 0.54 0.58 0.54 0.00 1.90 0.00 2.15 1.18 2.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 K mutually_exclusive stj chr2R + chr2R_9698342_9699942,chr2R_9699997_9701304 chr2R_9698342_9698702,chr2R_9698760_9701304 chr2R_9699943_9699996 chr2R_9698703_9698759 chr2R_9698258_9698341;chr2R_9701305_9701385 56.35 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 77.78 NA NA NA NA NA NA NA 57.14 NA NA NA NA 55.56 NA NA NA 57.14 NA NA NA 55.56 33.33 K jcn_only_AA CG4119 chrX + chrX_5560502_5560598 chrX_5560502_5560589 chrX_5560410_5560501;chrX_5560599_5560831 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 96.00 100.00 NA NA 100.00 95.65 97.06 NA 100.00 100.00 100.00 98.57 98.77 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 100.00 97.37 97.14 100.00 100.00 100.00 98.57 100.00 98.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 100.00 93.55 100.00 100.00 100.00 K intron_retention CG3476 chr2L + chr2L_7028667_7028726 chr2L_7028666_7028667;chr2L_7028726_7028727 chr2L_7028490_7028666;chr2L_7028727_7029008 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 4.55 12.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention mth chr3L - chr3L_345100_345157 chr3L_345099_345100;chr3L_345157_345158 chr3L_345049_345099;chr3L_345158_345216 13.46 11.54 10.71 9.38 12.00 14.29 18.87 18.92 10.81 15.00 40.62 12.77 11.11 7.41 9.09 12.50 13.04 12.50 16.67 12.16 21.43 12.50 8.77 10.42 6.67 18.18 12.90 NA 57.14 NA 22.73 17.65 37.50 13.46 10.53 0.00 8.57 16.22 12.50 14.29 35.00 13.16 19.05 25.00 18.75 16.22 7.14 33.33 10.00 13.16 17.39 16.67 23.53 16.13 28.57 13.79 12.90 14.29 K jcn_only_AA CSN3 chr3L - chr3L_20832430_20832497 chr3L_20832441_20832497 chr3L_20832498_20832565;chr3L_20832133_20832429 100.00 100.00 98.36 100.00 100.00 100.00 98.47 100.00 100.00 98.33 100.00 98.98 100.00 100.00 98.86 100.00 100.00 98.55 100.00 100.00 96.61 98.80 100.00 99.07 98.55 100.00 99.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.04 98.11 100.00 100.00 100.00 100.00 100.00 99.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention sprt,CG30022 chr2R - chr2R_7275650_7275712 chr2R_7275649_7275650;chr2R_7275712_7275713 chr2R_7275505_7275649;chr2R_7275713_7275887 6.52 0.00 0.00 5.88 5.56 0.00 8.57 7.55 2.90 5.56 9.09 6.56 9.52 5.88 0.00 4.44 11.76 0.00 8.33 8.00 0.00 3.70 8.33 6.67 9.68 8.00 11.27 14.52 16.67 6.45 9.26 6.67 10.00 2.63 6.52 9.26 7.69 8.00 4.23 6.90 7.69 5.63 4.76 7.69 6.25 6.49 3.77 13.79 4.65 9.09 5.56 0.00 5.56 5.77 6.82 2.13 20.00 0.00 K intron_retention CG3632,RI_chrX_16195880_16196242 chrX + chrX_16194742_16194803 chrX_16194741_16194742;chrX_16194803_16194804 chrX_16194431_16194741;chrX_16194804_16194908 0.00 0.00 0.00 0.00 NA 0.00 2.56 3.64 1.64 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA K intron_retention Galpha49B,I_chr2R_8501587_8501648,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500390_8501071 chr2R_8500389_8500390;chr2R_8501071_8501072 chr2R_8500380_8500389;chr2R_8501072_8501850 16.67 NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA 0.00 NA NA NA 21.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG31998,I_chr4_225419_226294 chr4 - chr4_225419_226284;chr4_225419_226366 chr4_225419_226474 chr4_225319_225418;chr4_226475_226518 7.42 NA NA 4.62 NA NA 4.84 8.51 5.00 NA NA 15.00 30.43 0.00 NA 5.88 NA NA 25.00 12.00 NA NA 6.67 NA NA NA NA NA NA NA NA NA NA 8.82 NA 0.00 NA NA NA NA NA 4.44 NA NA NA NA NA NA 8.16 NA NA NA NA NA 9.09 NA NA NA K intron_retention CG7927,I_chr3L_8109906_8110404 chr3L + chr3L_8105815_8106111 chr3L_8105814_8105815;chr3L_8106111_8106112 chr3L_8105594_8105814;chr3L_8106112_8106478 0.00 0.00 0.00 2.78 0.00 0.00 10.00 1.09 1.44 0.00 0.00 1.77 1.61 3.57 0.00 1.28 1.79 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 1.15 0.00 0.00 0.00 3.51 1.59 0.00 0.00 3.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor MB8.chr3R.pasa.66,Alh,REI_chr3R_2921238_2921297,RI_chr3R_2921566_2921658,I_chr3R_2927820_2933442,RI_chr3R_2946518_2946663 chr3R - chr3R_2921566_2922237 chr3R_2921566_2922013 chr3R_2921558_2921565;chr3R_2922238_2922542 75.00 NA NA NA NA NA 100.00 NA NA 71.43 NA NA NA NA NA NA NA NA NA 92.86 NA 30.00 NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA NA 100.00 NA NA 57.14 NA NA NA NA NA NA NA NA NA 83.33 K alternative_donor Art3,I_chr3R_11054902_11054955 chr3R - chr3R_11054902_11054955;chr3R_11054902_11054965 chr3R_11054902_11054972 chr3R_11054802_11054901;chr3R_11054973_11055055 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 11.11 0.00 6.67 4.17 NA 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 NA 9.09 0.00 0.00 10.00 6.90 0.00 0.00 4.35 7.14 0.00 0.00 0.00 0.00 0.00 11.11 0.00 0.00 0.00 0.00 4.55 4.35 0.00 3.57 4.55 3.45 0.00 2.78 4.55 7.69 0.00 0.00 5.26 K intron_retention Nap1,I_chr2R_19794052_19794730,I_chr2R_19794246_19794473 chr2R - chr2R_19794246_19794566 chr2R_19794245_19794246;chr2R_19794566_19794567 chr2R_19794146_19794245;chr2R_19794567_19794573 66.67 NA NA 66.67 NA NA 66.67 88.89 53.85 NA NA 61.54 NA NA NA 58.33 NA 36.36 NA 66.67 NA NA NA NA NA NA 45.45 60.00 25.00 NA 85.00 NA 77.78 69.23 NA 81.25 NA NA 70.00 60.00 NA 69.23 NA NA NA NA 60.00 NA 46.15 88.89 80.00 NA NA NA 90.00 70.00 NA 53.85 K intron_retention CG9577,CG9578 chrX + chrX_20060850_20060989 chrX_20060849_20060850;chrX_20060989_20060990 chrX_20060721_20060849;chrX_20060990_20061152 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.57 0.00 3.45 0.00 2.33 0.00 0.00 0.00 0.00 0.00 7.41 0.00 0.00 0.00 0.00 0.00 NA 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 3.45 0.00 K jcn_only_AA alpha-Man-II chr3R + chr3R_5238530_5238585 chr3R_5238530_5238582 chr3R_5238326_5238529;chr3R_5238586_5239112 55.00 54.17 NA 51.52 50.00 NA 50.00 51.52 55.32 NA NA 57.58 NA NA 45.83 NA 59.09 NA NA 43.75 NA 71.43 48.57 66.67 NA 56.00 52.63 59.46 65.22 52.00 NA NA 52.38 70.27 54.55 40.91 63.33 55.00 61.90 54.05 NA 63.27 NA 59.09 NA NA NA 61.29 59.26 NA 50.00 56.52 NA NA 52.17 NA NA NA K intron_retention CG15011 chr3L - chr3L_4257889_4257945 chr3L_4257888_4257889;chr3L_4257945_4257946 chr3L_4257772_4257888;chr3L_4257946_4258062 0.00 0.00 0.00 3.23 NA NA 4.17 0.00 6.25 0.00 0.00 0.00 NA NA 5.00 8.00 NA 0.00 0.00 2.50 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.94 0.00 14.81 NA 0.00 0.00 0.00 0.00 0.00 5.00 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 K alternative_donor orb2,I_chr3L_8942860_8947477 chr3L - chr3L_8942860_8947477 chr3L_8942860_8947032 chr3L_8942760_8942859;chr3L_8947478_8947521 93.75 94.12 94.12 95.45 100.00 90.91 96.00 92.59 90.48 75.00 100.00 91.43 93.75 95.00 89.47 96.30 93.33 87.50 94.12 100.00 88.89 93.75 95.00 93.75 83.33 100.00 88.89 90.91 92.31 100.00 100.00 100.00 94.44 96.77 91.67 94.12 86.36 90.91 100.00 91.30 100.00 100.00 82.35 92.86 100.00 94.12 92.31 94.12 90.62 86.67 84.21 92.31 100.00 88.89 95.24 90.91 91.67 94.12 K alternative_donor Mitf,I_chr4_1225890_1225947 chr4 + chr4_1226276_1226372 chr4_1226294_1226372 chr4_1226373_1226697;chr4_1225948_1226275 91.67 100.00 90.00 97.14 100.00 93.33 87.50 88.57 93.75 100.00 93.33 70.59 92.86 94.44 86.96 86.21 93.75 85.71 96.67 89.74 92.31 75.00 94.44 92.86 100.00 94.12 88.24 NA 66.67 81.25 89.29 90.00 100.00 89.74 87.50 100.00 100.00 90.00 92.31 95.00 NA 94.87 83.33 91.67 72.73 84.62 73.33 90.91 89.74 90.00 100.00 92.31 87.50 85.71 92.31 92.31 78.26 93.75 K cassette rtGEF,I_chr2L_20359856_20360012 chr2L + chr2L_20360813_20364296 chr2L_20360813_20361968;chr2L_20362827_20364296 chr2L_20361969_20362826 chr2L_20360564_20360812;chr2L_20364297_20365220 5.98 5.06 5.00 12.73 4.76 5.56 8.00 5.56 7.96 7.25 4.65 17.78 3.23 5.00 6.45 9.76 6.98 2.74 4.35 18.24 5.17 6.71 8.55 5.98 7.84 7.55 7.14 9.86 8.77 4.23 9.80 5.41 5.76 6.67 4.00 8.74 5.03 5.00 6.82 5.11 5.00 6.40 6.38 5.93 2.84 3.94 5.06 6.21 7.48 3.70 6.06 7.41 7.79 5.06 7.02 4.88 4.40 5.37 K intron_retention CG5537,I_chr3L_5804425_5804485 chr3L + chr3L_5805080_5805164 chr3L_5805079_5805080;chr3L_5805164_5805165 chr3L_5804486_5805079;chr3L_5805165_5805330 54.84 50.00 47.56 74.68 51.43 63.77 85.37 55.28 58.11 78.79 52.54 52.29 54.17 62.12 54.84 51.75 53.45 62.35 50.56 64.41 50.62 54.00 65.25 51.72 75.93 66.13 53.75 53.42 64.15 48.15 57.55 53.66 58.89 54.40 56.76 75.44 54.87 52.75 55.12 52.21 76.92 59.59 53.33 55.66 44.57 55.30 57.76 54.17 52.23 48.59 52.80 53.85 55.05 54.20 61.29 49.69 56.74 61.46 K cassette CG3036 chr2L + chr2L_4892605_4901401 chr2L_4892605_4893934;chr2L_4893995_4901401 chr2L_4893935_4893994 chr2L_4892115_4892604;chr2L_4901402_4901917 100.00 100.00 100.00 95.65 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 90.91 NA 100.00 100.00 100.00 85.71 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 85.71 100.00 100.00 100.00 94.12 100.00 94.12 100.00 88.89 NA 100.00 100.00 NA 100.00 K jcn_only_AA CG9286,Dip-B chr3R + chr3R_9606899_9606962 chr3R_9606899_9606959 chr3R_9606831_9606898;chr3R_9606963_9607027 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 NA 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.84 97.37 98.63 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.13 K alternative_acceptor CG6845,I_chr3L_148414_148465,I_chr3L_148414_148475,I_chr3L_148414_148489 chr3L + chr3L_148414_148465;chr3L_148414_148475;chr3L_148414_148461 chr3L_148414_148489 chr3L_148350_148413;chr3L_148490_148555 0.00 0.00 0.00 5.56 0.00 5.88 3.03 0.00 2.33 11.11 0.00 0.00 0.00 7.14 0.00 4.00 0.00 0.00 0.00 3.03 10.00 0.00 0.00 5.88 0.00 0.00 5.88 14.29 0.00 0.00 6.90 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 4.35 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 7.69 5.00 0.00 6.25 0.00 K jcn_only_AA Trxr-1 chrX + chrX_8136765_8140126 chrX_8136765_8137892 chrX_8136556_8136764 0.22 0.00 0.50 0.00 0.00 0.32 0.28 0.22 0.34 0.00 0.00 0.00 0.00 0.45 0.47 0.00 0.50 0.00 0.00 0.43 0.27 0.00 0.17 0.19 0.69 0.32 0.00 0.00 1.24 0.00 0.38 0.31 0.28 0.23 0.00 0.30 0.00 0.48 0.00 0.31 0.73 0.16 0.76 0.42 0.57 0.20 0.00 0.26 0.19 0.22 0.00 0.00 0.00 0.27 0.00 0.22 0.42 0.00 K jcn_only_AD CG14442,I_chrX_6586147_6586435 chrX - chrX_6586898_6587143 chrX_6586898_6587125 chrX_6586436_6586897;chrX_6587144_6589034 27.78 NA NA NA NA NA NA 46.43 28.57 NA NA NA NA NA NA NA NA NA NA 26.09 NA 21.43 NA NA NA NA NA NA 55.56 31.25 NA 27.27 25.45 NA NA NA 30.00 25.00 NA 29.55 NA 24.24 NA NA 15.91 30.77 NA 27.78 28.00 NA NA NA NA NA NA NA NA 23.26 K intron_retention mRpL40 chr3R + chr3R_7234049_7234107 chr3R_7234048_7234049;chr3R_7234107_7234108 chr3R_7233803_7234048;chr3R_7234108_7234548 0.00 0.00 0.00 3.23 0.00 0.00 3.57 1.82 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 NA 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 10.81 0.00 10.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 1.92 0.00 0.00 0.00 1.23 0.00 0.00 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Cf2,I_chr2L_4882802_4882864 chr2L - chr2L_4882493_4882888 chr2L_4882492_4882493;chr2L_4882888_4882889 chr2L_4882368_4882492;chr2L_4882889_4882964 30.77 NA NA NA NA NA 36.36 23.53 NA NA NA 38.46 NA NA NA NA NA NA NA 25.00 NA 36.00 35.29 NA NA NA 13.33 23.53 38.46 13.04 NA NA 32.26 30.77 NA 41.67 30.77 NA NA 19.35 15.38 NA NA 30.77 43.75 NA NA 18.52 30.77 NA 26.67 NA NA NA NA NA NA 26.32 K alternative_acceptor Atg18,I_chr3L_8182683_8182941 chr3L + chr3L_8181681_8182401 chr3L_8181681_8182386 chr3L_8180913_8181680;chr3L_8182402_8182545 26.67 26.98 21.74 42.42 15.91 9.84 18.37 26.74 25.89 22.22 13.04 16.67 31.91 19.15 24.32 32.35 26.67 22.45 23.33 22.22 20.93 38.46 29.41 23.26 42.22 47.92 33.73 39.13 33.33 27.14 30.43 19.30 20.75 25.56 25.49 55.32 27.06 34.04 29.51 27.97 32.56 24.60 26.92 39.58 27.27 25.00 24.42 29.82 17.65 25.97 27.91 26.92 13.56 25.81 29.23 26.98 16.50 17.95 K intron_retention CG7379,I_chr3R_13623559_13623689 chr3R - chr3R_13623609_13623689 chr3R_13623608_13623609;chr3R_13623689_13623690 chr3R_13622656_13623608;chr3R_13623690_13623789 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 7.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD CG8051,I_chrX_19198128_19201351 chrX - chrX_19198128_19199330;chrX_19198128_19201671 chrX_19198128_19199326 chrX_19198028_19198127;chrX_19201672_19201734 47.86 NA NA NA NA NA NA NA 32.00 NA NA 29.17 NA NA NA 40.00 NA NA NA NA NA NA 50.00 NA NA NA NA NA 78.57 NA NA NA 70.83 NA NA NA NA NA NA 51.61 NA NA NA NA NA 68.97 NA 42.42 45.16 NA 65.22 NA NA NA NA NA NA 45.71 K intron_retention CG31150,Hmt-1 chr3R - chr3R_11671407_11671465 chr3R_11671406_11671407;chr3R_11671465_11671466 chr3R_11671227_11671406;chr3R_11671466_11671609 0.22 0.00 0.54 0.92 0.00 0.00 0.38 0.20 0.00 0.00 0.00 0.37 0.00 0.00 0.00 1.53 0.00 0.00 0.00 0.46 0.68 2.23 1.15 0.30 0.00 0.00 1.19 5.11 1.75 0.00 1.43 0.92 0.34 0.37 0.44 0.00 0.00 0.00 0.00 0.32 1.36 0.00 0.00 0.62 0.35 0.44 0.31 0.73 0.15 0.72 0.27 1.22 0.00 0.00 0.00 0.00 0.00 0.22 K intron_retention CG4673,I_chr3R_21449128_21449210,I_chr3R_21452371_21452464,I_chr3R_21452407_21452453 chr3R - chr3R_21437172_21437243 chr3R_21437171_21437172;chr3R_21437243_21437244 chr3R_21436770_21437171;chr3R_21437244_21437656 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 4.76 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 K alternative_donor csw,I_chrX_2002576_2003165 chrX + chrX_1988774_1989042 chrX_1988974_1989042 chrX_1989043_1989230;chrX_1988680_1988773 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Gyc-89Db,Dhfr chr3R + chr3R_12303296_12304472 chr3R_12303295_12303296;chr3R_12304472_12304473 chr3R_12302598_12303295;chr3R_12304473_12306779 3.23 7.14 19.05 0.00 12.50 0.00 10.20 0.00 12.73 NA 6.25 14.29 0.00 0.00 0.00 7.14 12.50 NA 10.53 3.70 0.00 0.00 7.14 9.09 11.76 4.76 0.00 0.00 0.00 0.00 0.00 NA 0.00 18.18 0.00 0.00 0.00 0.00 0.00 6.25 0.00 6.25 NA 0.00 6.25 7.41 5.88 2.13 3.23 13.33 8.00 0.00 NA NA 9.52 6.25 0.00 0.00 K intron_retention CG31531,I_chr3R_485548_485960,I_chr3R_485608_485960,noncoding_14584,I_chr3R_486122_506500,I_chr3R_496573_505950,I_chr3R_523978_526879 chr3R + chr3R_485608_485960 chr3R_485607_485608;chr3R_485960_485961 chr3R_485508_485607;chr3R_485961_486060 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 98.00 92.86 92.86 97.22 100.00 95.00 94.74 100.00 95.24 100.00 100.00 100.00 100.00 96.67 95.45 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 93.75 92.31 94.44 93.94 100.00 100.00 100.00 95.00 100.00 100.00 NA 97.30 96.55 100.00 100.00 100.00 100.00 NA 100.00 NA NA 96.00 K alternative_acceptor CG9776,CG9772 chr3R - chr3R_161452_161507 chr3R_161467_161507 chr3R_161508_161635;chr3R_161143_161451 0.00 0.00 0.00 5.05 0.00 0.00 1.22 1.40 1.44 0.00 0.00 0.75 0.00 1.41 0.00 1.52 0.00 0.00 0.00 1.24 0.00 7.55 0.81 0.98 0.00 1.41 3.45 6.82 0.00 1.59 0.00 0.00 0.00 0.66 0.00 4.65 0.00 0.00 0.00 2.13 2.70 2.13 0.00 1.00 0.00 0.00 1.15 0.00 0.00 0.83 0.00 1.09 0.00 0.00 0.00 0.00 0.67 0.00 K alternative_acceptor CG3223 chr3R + chr3R_3835352_3835424 chr3R_3835352_3835403 chr3R_3835192_3835351;chr3R_3835425_3835841 0.00 1.16 0.00 1.30 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 4.05 3.30 1.33 0.00 1.59 2.11 0.00 0.00 0.00 1.30 0.00 0.72 0.68 0.00 0.00 0.00 0.00 0.00 1.15 1.25 1.16 0.00 0.96 0.00 0.00 0.00 0.00 0.00 1.19 0.86 0.00 K intron_retention CG11722,RI_chr3R_5873666_5874292 chr3R - chr3R_5870782_5870847 chr3R_5870781_5870782;chr3R_5870847_5870848 chr3R_5870730_5870781;chr3R_5870848_5870916 6.90 NA NA NA NA 7.14 NA 6.67 0.00 NA NA 5.88 NA NA NA NA NA NA NA 6.67 NA NA 18.18 11.11 NA NA NA NA NA NA 25.00 NA 23.08 NA NA 33.33 0.00 NA 12.50 0.00 NA NA NA 0.00 NA 11.11 NA NA NA NA NA NA NA NA NA 12.50 0.00 6.67 K intron_retention RhoGAP15B chrX + chrX_16843485_16845017 chrX_16843484_16843485;chrX_16845017_16845018 chrX_16842887_16843484;chrX_16845018_16847301 11.76 10.34 14.58 29.31 5.56 12.00 15.71 9.09 14.96 10.00 18.42 14.10 11.54 10.87 11.76 12.33 7.14 13.95 9.68 11.88 13.16 62.50 12.12 6.52 12.50 10.00 8.51 6.25 32.00 20.37 15.69 8.00 8.93 15.49 13.46 3.92 13.29 6.25 13.13 10.53 15.00 11.11 11.76 14.29 9.09 4.88 6.67 14.29 10.00 17.65 14.29 17.39 6.45 8.11 10.34 10.91 8.00 6.90 K intron_retention CG9044 chr2L + chr2L_5953058_5953415 chr2L_5953057_5953058;chr2L_5953415_5953416 chr2L_5952989_5953057;chr2L_5953416_5954477 0.00 NA 9.52 7.41 0.00 0.00 NA 4.44 7.32 NA NA 0.00 7.41 0.00 0.00 0.00 0.00 NA 3.23 5.71 0.00 0.00 2.94 0.00 NA NA 8.33 0.00 NA NA 0.00 NA NA 5.71 NA NA 0.00 0.00 0.00 3.70 NA 5.56 13.04 0.00 NA 0.00 NA NA 13.79 0.00 0.00 NA NA 6.25 7.41 0.00 0.00 NA K cassette Top1 chrX + chrX_15213841_15215893 chrX_15213841_15215186;chrX_15215405_15215893 chrX_15215187_15215404 chrX_15213834_15213840;chrX_15215894_15216860 100.00 100.00 100.00 100.00 100.00 100.00 98.67 100.00 100.00 98.70 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.75 100.00 98.80 100.00 97.87 98.65 98.41 98.41 98.48 100.00 100.00 98.75 100.00 100.00 100.00 100.00 98.73 100.00 98.90 100.00 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814894;chr2R_2815657_2816013;chr2R_2816342_2816577;chr2R_2816779_2817327;chr2R_2817604_2817753 chr2R_2814895_2815656;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817328_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG1970,I_chr4_590803_590943,I_chr4_590970_591026,I_chr4_590970_591030 chr4 - chr4_590970_591026;chr4_590970_591030 chr4_590970_591034 chr4_590944_590969;chr4_591035_591043 98.94 99.18 100.00 99.02 98.49 99.59 97.96 99.47 99.40 100.00 100.00 99.28 98.92 98.97 98.13 98.94 99.51 99.58 97.25 99.81 100.00 98.86 98.42 97.99 99.28 98.84 96.91 98.30 97.73 99.61 96.96 98.30 98.18 99.40 99.34 95.60 99.32 99.07 99.08 98.80 99.53 98.97 100.00 98.74 98.86 98.69 98.42 97.58 99.04 98.61 98.77 99.01 99.47 98.11 98.70 98.55 99.64 98.92 K cassette CG32062,F_chr3L_10561706_10564172,I_chr3L_10573430_10580726,F_chr3L_10582617_10583219 chr3L + chr3L_10580788_10583219;chr3L_10580788_10583426 chr3L_10580788_10582455;chr3L_10582617_10583219,chr3L_10582617_10583426 chr3L_10582456_10582616 chr3L_10580763_10580787;chr3L_10583427_10583490 92.86 90.00 NA 100.00 83.33 NA NA 85.71 93.33 71.43 NA 100.00 NA 100.00 100.00 NA NA NA NA 93.75 NA 92.86 83.33 92.31 100.00 NA 100.00 NA 85.71 85.71 NA 100.00 80.00 80.00 83.33 66.67 94.44 92.31 94.12 91.67 NA 85.71 NA 90.00 100.00 78.57 94.12 NA 93.33 92.86 93.75 88.89 100.00 100.00 NA 90.00 94.12 100.00 K intron_retention CG17119,sav chr3R - chr3R_18881446_18881510 chr3R_18881445_18881446;chr3R_18881510_18881511 chr3R_18881085_18881445;chr3R_18881511_18881693 0.79 1.42 1.38 0.82 0.00 0.78 0.75 0.38 0.41 0.00 0.00 0.88 0.00 0.00 1.40 1.03 0.00 0.70 0.00 0.40 0.00 4.24 2.45 1.28 1.80 0.66 4.24 8.22 6.84 1.24 0.59 0.68 0.74 0.93 1.35 2.04 1.90 0.76 0.50 0.98 3.17 1.15 0.00 0.00 0.86 1.48 0.73 0.79 0.62 3.79 0.88 0.96 0.00 0.00 0.00 0.60 1.10 1.00 K alternative_donor Mef2,I_chr2R_5806354_5806933,CREFI_chr2R_5809509_5845628,I_chr2R_5814375_5816404,RI_chr2R_5846889_5846948 chr2R - chr2R_5806568_5806951 chr2R_5806568_5806933 chr2R_5806559_5806567;chr2R_5806952_5807033 91.67 88.89 92.31 89.47 92.31 92.31 91.67 93.75 96.30 87.50 100.00 100.00 NA 90.91 95.24 90.00 100.00 78.57 93.75 87.50 91.67 100.00 90.32 75.00 92.31 91.67 87.50 83.33 NA 81.82 90.00 69.23 91.67 100.00 91.67 100.00 92.86 93.33 90.48 90.48 100.00 95.45 81.82 75.00 92.86 94.44 89.47 100.00 94.44 100.00 85.19 91.67 84.62 85.00 94.12 80.00 90.00 83.33 K intron_retention drpr,I_chr3L_1718097_1718705,I_chr3L_1718154_1723579,I_chr3L_1720385_1723579,CG18171 chr3L - chr3L_1718154_1723579 chr3L_1718153_1718154;chr3L_1723579_1723580 chr3L_1718054_1718153;chr3L_1723580_1723679 91.67 87.50 100.00 95.45 88.89 100.00 86.67 89.47 86.96 NA 90.00 95.45 69.23 87.50 100.00 NA NA NA 90.00 100.00 NA 64.71 91.67 NA NA 90.00 91.67 NA 87.50 90.00 77.78 NA 100.00 94.12 NA 100.00 100.00 100.00 NA 100.00 100.00 95.00 NA 100.00 NA 90.91 NA 85.71 95.45 100.00 80.00 88.89 NA 100.00 100.00 NA NA NA K intron_retention Cp110,I_chrX_21890195_21895316,I_chrX_21900456_21904601 chrX + chrX_21884859_21884922 chrX_21884858_21884859;chrX_21884922_21884923 chrX_21884686_21884858;chrX_21884923_21886362 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA 5.71 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention As chr3L - chr3L_11203191_11203253 chr3L_11203190_11203191;chr3L_11203253_11203254 chr3L_11202936_11203190;chr3L_11203254_11203680 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.35 NA 2.56 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 11.36 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 1.85 2.44 0.00 NA 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.59 K cassette CG15611,I_chr2R_12996782_13000822 chr2R + chr2R_12996782_13000822 chr2R_12996782_12997671;chr2R_12998006_13000822 chr2R_12997672_12998005 chr2R_12996682_12996781;chr2R_13000823_13000909 98.18 100.00 96.67 93.88 96.15 100.00 100.00 97.01 98.67 100.00 96.15 97.73 100.00 100.00 100.00 100.00 100.00 91.30 100.00 98.67 96.43 92.31 100.00 95.45 92.86 96.67 100.00 100.00 100.00 93.75 91.67 92.86 95.24 100.00 100.00 92.86 95.00 100.00 100.00 100.00 94.74 98.18 100.00 100.00 93.75 96.30 96.15 91.67 100.00 100.00 96.15 94.44 93.33 100.00 97.78 96.15 100.00 100.00 K intron_retention fs(1)h,I_chrX_7950171_7952371,I_chrX_7954192_7955240 chrX - chrX_7944317_7944469 chrX_7944316_7944317;chrX_7944469_7944470 chrX_7944185_7944316;chrX_7944470_7944589 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention sec8 chr3R - chr3R_1582804_1582865 chr3R_1582803_1582804;chr3R_1582865_1582866 chr3R_1582510_1582803;chr3R_1582866_1582990 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8605 chr3L + chr3L_7318136_7318189 chr3L_7318135_7318136;chr3L_7318189_7318190 chr3L_7317910_7318135;chr3L_7318190_7318269 13.04 10.53 13.04 14.63 5.56 NA 7.32 18.18 15.15 NA 4.76 6.25 15.79 6.67 6.67 20.00 0.00 19.05 9.09 13.16 0.00 0.00 11.11 13.04 NA 21.43 0.00 0.00 NA 28.57 39.13 NA 7.69 23.08 13.33 17.65 NA 20.00 30.77 17.24 NA 9.09 23.08 12.50 NA 6.67 21.05 NA 6.12 39.13 15.79 NA 10.53 12.50 16.67 5.88 6.25 29.41 K cassette wdp,I_chr2R_18188515_18198588 chr2R - chr2R_18188515_18199200;chr2R_18188515_18198588 chr2R_18188515_18195712;chr2R_18195762_18198588,chr2R_18195762_18199200 chr2R_18195713_18195761 chr2R_18188415_18188514;chr2R_18199201_18199492 91.67 100.00 NA 61.54 NA NA NA 87.50 92.31 86.49 NA 88.89 NA NA NA 87.50 NA NA NA 85.71 NA 93.33 92.31 91.67 87.50 NA 100.00 87.50 90.91 100.00 85.71 100.00 95.24 NA 100.00 87.50 91.67 85.71 100.00 94.74 84.62 88.89 NA 93.75 100.00 91.67 90.00 95.45 100.00 85.71 100.00 88.89 87.50 100.00 NA 85.71 NA 100.00 K intron_retention sec23,I_chr3R_1474873_1475080,I_chr3R_1474899_1475080,I_chr3R_1474960_1475051,I_chr3R_1477727_1478102 chr3R + chr3R_1474899_1475080 chr3R_1474898_1474899;chr3R_1475080_1475081 chr3R_1474877_1474898;chr3R_1475081_1475151 100.00 95.45 100.00 100.00 100.00 100.00 98.18 100.00 98.80 90.48 100.00 100.00 96.77 96.97 100.00 100.00 97.50 100.00 100.00 95.83 96.30 96.55 96.30 100.00 100.00 100.00 100.00 96.77 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 95.65 100.00 100.00 94.74 98.39 96.00 94.74 100.00 100.00 100.00 95.24 98.53 97.06 96.43 95.45 100.00 100.00 97.44 100.00 100.00 96.43 K intron_retention ens,I_chr3L_4130719_4131120 chr3L - chr3L_4125061_4125135 chr3L_4125060_4125061;chr3L_4125135_4125136 chr3L_4124919_4125060;chr3L_4125136_4125500 54.41 57.58 59.09 50.82 58.33 44.12 46.67 60.00 50.00 56.25 51.43 47.83 64.00 55.00 58.54 47.83 57.69 52.38 62.50 49.53 55.17 56.41 58.18 42.86 41.46 67.74 64.86 62.86 52.54 61.36 54.05 41.94 58.33 58.33 48.28 58.33 52.94 52.38 52.50 49.35 42.86 58.18 60.71 44.68 66.67 44.74 52.00 47.46 54.41 75.00 55.36 55.00 72.00 53.85 57.78 45.83 41.67 50.00 K jcn_only_AD CG8311 chr2R - chr2R_12475017_12475116 chr2R_12475017_12475108 chr2R_12474550_12475016;chr2R_12475117_12475760 100.00 98.90 96.63 98.97 97.40 98.44 99.06 99.12 100.00 100.00 100.00 99.45 98.31 98.25 98.91 98.70 100.00 100.00 100.00 99.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.46 100.00 100.00 100.00 100.00 97.87 98.99 98.85 97.33 100.00 100.00 99.27 100.00 100.00 100.00 98.51 100.00 97.37 98.73 100.00 96.91 98.11 95.92 100.00 100.00 100.00 97.50 100.00 K intron_retention CG42271,I_chrX_14127244_14127453,RI_chrX_14127297_14127804 chrX - chrX_14127297_14127453 chrX_14127296_14127297;chrX_14127453_14127454 chrX_14127197_14127296;chrX_14127454_14127553 6.90 3.70 0.00 18.52 NA 4.55 10.71 7.89 5.13 29.41 0.00 4.65 4.76 9.52 8.33 5.00 NA 8.33 0.00 2.00 10.53 19.35 8.89 9.52 14.81 20.00 9.76 10.53 35.48 15.38 0.00 NA 12.82 0.00 3.57 6.06 0.00 0.00 6.67 4.88 7.41 8.51 5.88 8.33 0.00 12.90 0.00 10.34 4.88 0.00 4.65 8.00 0.00 0.00 16.67 9.68 0.00 7.14 K jcn_only_AD CG3632,RI_chrX_16195880_16196242 chrX + chrX_16190824_16191693;chrX_16190941_16191693 chrX_16190917_16191693 chrX_16191694_16191751;chrX_16190763_16190823 30.77 NA NA 36.67 NA 34.78 37.93 27.27 22.50 NA NA 36.36 NA NA 20.00 19.44 NA NA 34.78 30.77 NA NA 27.59 40.91 NA 22.73 NA NA NA NA 41.67 NA NA 23.08 33.33 NA 21.74 NA NA 55.00 NA 26.53 NA NA NA NA NA NA 18.42 NA 48.00 52.38 NA NA 17.39 NA NA NA K intron_retention CG31342,I_chr3R_8813079_8814327,I_chr3R_8822346_8822403 chr3R + chr3R_8813207_8814327 chr3R_8813206_8813207;chr3R_8814327_8814328 chr3R_8813155_8813206;chr3R_8814328_8814427 5.00 6.67 0.00 0.00 0.00 10.81 7.02 4.41 5.75 6.06 6.90 4.71 0.00 0.00 4.17 11.36 0.00 5.00 4.55 3.70 6.67 4.23 2.56 2.78 2.50 8.57 6.45 6.12 8.70 1.92 15.56 0.00 8.89 5.33 7.84 6.82 1.09 1.92 1.52 3.66 4.65 7.45 6.67 1.54 4.76 6.67 5.13 5.88 8.57 10.42 4.00 4.88 0.00 2.56 8.33 6.25 14.29 16.67 K intron_retention sax,CG1882 chr2R + chr2R_3700498_3700785 chr2R_3700497_3700498;chr2R_3700785_3700786 chr2R_3699932_3700497;chr2R_3700786_3702250 4.44 2.27 4.65 8.33 0.00 0.00 2.47 6.82 3.28 5.13 0.00 4.55 7.41 3.33 4.65 0.00 0.00 0.00 0.00 1.33 5.71 16.05 6.74 5.88 5.45 2.70 8.05 8.42 14.29 3.92 4.44 6.25 4.48 0.00 0.00 8.96 2.82 3.45 6.94 10.61 7.46 9.26 0.00 6.76 2.56 1.72 3.03 5.26 1.82 5.77 8.82 5.13 11.11 2.04 0.00 4.26 2.33 0.00 K intron_retention Dap160,I_chr2L_21139943_21140007 chr2L - chr2L_21139603_21139675 chr2L_21139602_21139603;chr2L_21139675_21139676 chr2L_21138712_21139602;chr2L_21139676_21139942 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor aux chr3R + chr3R_48913_50392 chr3R_48913_50320 chr3R_47980_48912;chr3R_50393_50730 100.00 100.00 100.00 98.55 97.83 100.00 100.00 100.00 99.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 98.55 98.63 95.65 100.00 100.00 98.04 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 97.22 96.77 100.00 100.00 100.00 100.00 K cassette exba,I_chr3R_1423660_1424665,I_chr3R_1425087_1425925,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1423660_1424665 chr3R_1423660_1423925;chr3R_1423967_1424665 chr3R_1423926_1423966 chr3R_1423560_1423659;chr3R_1424666_1424765 99.77 99.59 99.61 99.77 100.00 100.00 99.48 100.00 99.81 100.00 100.00 99.77 99.48 100.00 99.60 100.00 100.00 100.00 100.00 100.00 99.55 99.36 99.72 100.00 99.45 100.00 100.00 100.00 99.28 100.00 99.60 100.00 99.53 99.79 100.00 99.36 99.69 99.60 99.69 98.96 99.59 99.80 99.49 99.61 100.00 99.59 100.00 99.38 99.81 99.68 99.70 100.00 100.00 99.48 99.66 100.00 100.00 98.67 K alternative_acceptor PRL-1,RI_chr2L_16249092_16250080,I_chr2L_16250028_16250080 chr2L - chr2L_16250028_16250080;chr2L_16249722_16250080;chr2L_16249092_16250080 chr2L_16249707_16250080 chr2L_16250081_16250158;chr2L_16248992_16249091 96.50 96.40 99.31 97.03 98.89 96.83 96.81 97.88 96.31 96.77 98.28 96.96 96.50 98.15 97.06 97.41 97.90 97.35 97.73 96.17 99.14 94.12 95.81 98.59 95.92 98.32 93.84 93.81 95.88 90.55 95.21 95.89 95.38 97.21 95.24 97.56 96.30 96.20 98.89 94.74 95.29 96.30 96.32 97.33 96.20 96.24 95.12 97.42 96.26 92.96 94.63 94.83 97.10 97.96 97.60 98.81 97.03 96.02 K intron_retention exba,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1426031_1426209 chr3R_1426030_1426031;chr3R_1426209_1426210 chr3R_1426010_1426030;chr3R_1426210_1426225 96.00 100.00 100.00 95.45 100.00 100.00 100.00 96.00 97.30 100.00 90.00 96.00 90.91 100.00 92.31 100.00 100.00 93.75 90.48 100.00 92.31 90.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 88.89 95.00 92.86 93.75 97.14 90.91 75.00 100.00 100.00 NA 95.65 86.67 96.43 100.00 100.00 95.24 85.19 88.89 95.45 96.97 94.74 92.86 100.00 NA NA 93.33 88.89 NA 91.67 K intron_retention CG1578,RI_chrX_11709573_11709680,I_chrX_11709573_11710263,RI_chrX_11709573_11710335,noncoding_23225,I_chrX_11710380_11710454 chrX - chrX_11709573_11710454 chrX_11709572_11709573;chrX_11710454_11710455 chrX_11709473_11709572;chrX_11710455_11710554 35.48 41.67 30.77 46.67 45.45 NA 57.14 43.75 35.48 NA NA 35.00 33.33 38.46 35.71 45.00 NA 26.67 NA 19.35 NA NA 33.33 15.79 NA NA 41.18 NA 54.55 41.67 44.44 NA 46.15 43.75 NA 35.71 14.81 15.38 23.53 26.32 NA 38.89 NA 29.17 NA NA 20.00 26.67 39.13 NA 41.67 30.77 NA NA 18.75 NA 14.29 33.33 K jcn_only_AA CG17370,RI_chr3R_21707998_21710705,RI_chr3R_21714780_21715376 chr3R + chr3R_21711552_21711616 chr3R_21711552_21711601 chr3R_21711104_21711551;chr3R_21711617_21711742 12.66 8.57 6.00 16.88 12.24 0.00 12.33 11.76 16.88 12.50 18.42 17.07 5.13 15.38 6.67 10.45 8.51 10.20 14.58 9.68 18.42 20.45 13.56 7.27 21.21 12.50 13.46 15.62 6.45 4.00 14.63 25.00 5.88 13.85 14.63 9.68 11.43 18.18 11.86 18.52 15.00 19.18 8.82 16.67 12.50 3.03 NA 20.00 14.06 8.11 12.82 15.62 NA NA 13.21 10.00 13.33 8.33 K alternative_acceptor glu chr2L - chr2L_16734268_16734335 chr2L_16734292_16734335 chr2L_16734336_16736019;chr2L_16733617_16734267 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 1.47 2.22 0.00 0.00 1.82 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 1.39 2.13 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911865_5913354;chr2R_5911708_5913354;chr2R_5911755_5913354 chr2R_5911803_5913354 chr2R_5913355_5913433;chr2R_5911703_5911707 36.36 NA 38.89 54.55 23.08 45.45 46.67 31.03 46.15 30.00 45.45 52.63 44.44 25.00 46.67 37.50 33.33 50.00 40.00 36.00 43.75 30.00 35.29 15.38 50.00 57.14 50.00 NA NA 23.08 47.37 NA 18.18 32.26 20.00 44.44 25.00 NA 21.43 26.32 NA 36.67 36.36 27.27 NA 33.33 NA 26.67 46.67 NA 41.67 42.86 NA NA 31.82 25.00 22.22 NA K intron_retention CG16734,F_chr3R_5081035_5081083 chr3R + chr3R_5081526_5081581 chr3R_5081525_5081526;chr3R_5081581_5081582 chr3R_5081385_5081525;chr3R_5081582_5081737 5.98 0.00 0.00 15.79 NA NA 13.04 7.41 4.76 NA NA 17.39 NA NA NA 8.00 NA NA 4.17 5.71 NA NA NA 0.00 NA NA 10.53 NA NA NA 29.41 NA NA 3.23 0.00 28.57 NA NA NA 5.00 NA 3.45 NA NA NA NA NA NA 8.00 NA 0.00 NA NA 6.67 6.25 5.56 6.67 NA K intron_retention CG7627 chr2L - chr2L_8361033_8361100 chr2L_8361032_8361033;chr2L_8361100_8361101 chr2L_8360947_8361032;chr2L_8361101_8361198 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 8.82 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA K jcn_only_AD cnn,I_chr2R_9333096_9336723,I_chr2R_9333096_9336812,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9334834_9336812;chr2R_9334834_9336501;chr2R_9334834_9336719 chr2R_9334834_9336723 chr2R_9334744_9334833;chr2R_9336813_9336819 8.76 NA NA 6.45 NA NA 15.38 13.51 0.00 NA NA 10.34 4.35 NA NA 2.86 NA NA NA 15.38 NA 5.26 10.00 NA NA NA 3.45 3.85 NA 14.29 NA NA 6.90 NA NA 11.11 11.54 NA NA 15.38 NA 20.00 NA 4.44 NA 4.35 NA 8.00 15.15 9.52 3.85 NA NA NA NA NA NA NA N cassette Galpha49B,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8504447_8505299 chr2R_8504447_8504960;chr2R_8505090_8505299 chr2R_8504961_8505089 chr2R_8504292_8504446;chr2R_8505300_8505429 11.31 NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG32165 chr3L + chr3L_16590135_16590193 chr3L_16590138_16590193 chr3L_16590194_16590253;chr3L_16589919_16590134 24.05 NA NA NA NA NA NA NA 21.43 NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA 21.21 NA 36.36 NA NA NA NA NA NA NA NA 26.67 NA NA NA NA NA NA NA NA NA K mutually_exclusive I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499338_1500244,chr3L_1500389_1501798;chr3L_1499338_1501350,chr3L_1501407_1501798 chr3L_1499338_1499771,chr3L_1499880_1501798 chr3L_1500245_1500388;chr3L_1501351_1501406 chr3L_1499772_1499879 chr3L_1499043_1499337;chr3L_1501799_1501892 11.11 NA 20.00 30.00 NA NA NA 16.67 9.09 0.00 NA 15.38 NA NA 0.00 20.00 NA NA 12.50 11.11 NA 0.00 18.18 0.00 16.67 25.00 0.00 27.27 NA NA 0.00 NA 20.00 10.00 0.00 0.00 NA 16.67 33.33 20.00 0.00 8.33 NA 0.00 0.00 0.00 0.00 12.50 11.11 25.00 25.00 0.00 NA 0.00 14.29 16.67 25.00 0.00 K jcn_only_AD Gp150,I_chr2R_18205316_18205386,I_chr2R_18213233_18213308 chr2R + chr2R_18205274_18205386;chr2R_18205316_18205386;chr2R_18205282_18205386 chr2R_18205243_18205386 chr2R_18205387_18205459;chr2R_18205216_18205242 96.14 96.14 97.50 97.63 98.32 97.67 96.39 97.41 98.27 93.24 96.96 97.24 97.93 97.86 94.21 98.06 98.45 98.23 98.43 97.41 98.67 89.66 93.72 94.00 96.23 98.29 91.95 89.80 86.96 90.00 97.73 89.83 96.41 96.61 93.14 88.57 93.71 90.74 94.68 90.28 95.35 97.27 97.07 88.75 96.97 89.36 92.96 96.64 97.45 92.54 95.24 94.08 93.59 85.29 98.02 92.54 89.42 93.33 K intron_retention RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12931133_12931194 chr2R_12931132_12931133;chr2R_12931194_12931195 chr2R_12929560_12931132;chr2R_12931195_12931404 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention AGO1,I_chr2R_9844856_9845327 chr2R - chr2R_9839194_9842191 chr2R_9839193_9839194;chr2R_9842191_9842192 chr2R_9839119_9839193;chr2R_9842192_9842260 5.56 0.00 7.14 13.33 NA 0.00 5.56 12.00 12.12 NA NA 6.90 NA 0.00 5.88 NA NA 0.00 7.69 0.00 NA NA 0.00 0.00 NA NA 8.00 12.50 NA 5.56 NA NA 0.00 7.14 NA NA 0.00 0.00 0.00 3.70 NA 13.79 NA 5.26 NA NA NA 0.00 5.88 NA 0.00 7.14 NA NA 8.33 NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2388436;chrX_2388671_2389073;chrX_2389272_2389644;chrX_2389762_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2395659 chrX_2388437_2388670;chrX_2389074_2389271;chrX_2389645_2389761;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2395660_2395759 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 3.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.99 0.00 0.73 0.00 1.39 0.00 0.00 NA 0.78 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG10092,RI_chr3R_3714228_3714284 chr3R + chr3R_3714224_3714284 chr3R_3714223_3714224;chr3R_3714284_3714285 chr3R_3714128_3714223;chr3R_3714285_3714384 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA 15.38 5.26 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention CG3632,RI_chrX_16195880_16196242 chrX + chrX_16191273_16191693 chrX_16191272_16191273;chrX_16191693_16191694 chrX_16191116_16191272;chrX_16191694_16191751 76.69 NA NA 76.92 NA NA 73.33 76.47 81.25 NA NA 73.33 100.00 70.00 NA 84.62 66.67 NA NA 79.17 NA NA 66.67 66.67 NA NA 66.67 NA NA NA NA NA NA 92.86 70.00 100.00 57.14 NA 83.33 81.82 NA 80.00 NA 66.67 76.92 90.91 87.50 NA 86.67 72.73 71.43 NA NA NA NA NA 70.00 NA K intron_retention CG11902 chr3R + chr3R_21161774_21161824 chr3R_21161773_21161774;chr3R_21161824_21161825 chr3R_21161727_21161773;chr3R_21161825_21163343 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention yu chrX - chrX_5309075_5309354 chrX_5309074_5309075;chrX_5309354_5309355 chrX_5307840_5309074;chrX_5309355_5309488 1.96 2.60 1.18 1.55 0.00 0.00 3.12 2.82 2.70 3.12 4.00 1.18 2.63 1.64 3.19 4.03 3.96 0.00 1.87 4.17 0.00 3.53 4.27 4.49 0.00 0.00 6.52 5.56 1.39 1.09 0.00 0.00 2.27 3.64 0.00 3.80 1.00 4.17 0.00 2.72 0.00 2.16 3.70 1.43 0.00 0.00 3.77 2.33 16.67 0.00 1.00 2.78 0.00 0.00 4.76 0.00 0.00 1.96 K alternative_donor CG7861 chr2R + chr2R_1931877_1931938 chr2R_1931884_1931938 chr2R_1931939_1932469;chr2R_1931601_1931876 100.00 100.00 96.55 100.00 100.00 100.00 97.06 97.62 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 97.06 95.45 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 97.14 100.00 97.56 98.00 100.00 95.65 100.00 98.86 96.77 100.00 97.73 100.00 97.30 100.00 100.00 100.00 100.00 96.97 100.00 97.18 K intron_retention Klp10A chrX - chrX_11025334_11026583 chrX_11025333_11025334;chrX_11026583_11026584 chrX_11024269_11025333;chrX_11026584_11027396 0.00 0.00 0.00 0.38 0.00 0.00 0.51 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette ssp4,I_chr2R_13409412_13410357,RI_chr2R_13409412_13411004,I_chr2R_13409412_13411328,I_chr2R_13409412_13411588,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13408434_13411588 chr2R_13408434_13411004;chr2R_13411077_13411328;chr2R_13411404_13411588 chr2R_13411005_13411076;chr2R_13411329_13411403 chr2R_13408151_13408433;chr2R_13411589_13411688 20.00 20.00 NA 30.00 7.69 10.00 1.72 27.27 8.33 7.14 6.67 27.27 12.50 27.27 14.29 33.33 25.00 20.00 18.18 50.00 8.33 3.70 26.67 20.00 NA 10.53 25.00 NA 9.09 18.18 NA NA 33.33 14.29 33.33 NA 20.00 25.00 11.76 6.67 7.69 9.09 14.29 20.00 22.22 33.33 NA NA 25.00 15.79 26.67 25.00 NA 22.22 13.33 NA 25.00 37.50 K intron_retention Pfk,I_chr2R_5999081_6000140,E_chr2R_6001157_6001630 chr2R + chr2R_5999081_6000121 chr2R_5999080_5999081;chr2R_6000121_6000122 chr2R_5998981_5999080;chr2R_6000122_6000463 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 2.27 4.08 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 2.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5938,RI_chr3R_23101686_23102014 chr3R + chr3R_23102226_23102291 chr3R_23102225_23102226;chr3R_23102291_23102292 chr3R_23102015_23102225;chr3R_23102292_23102868 0.00 0.00 0.00 5.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 K alternative_donor sd,noncoding_23930,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15706472_15707881;chrX_15706305_15707881 chrX_15706564_15707881 chrX_15707882_15708324;chrX_15706259_15706304 71.43 42.86 71.43 50.00 83.33 60.00 42.86 45.45 63.16 NA 75.00 85.71 NA 30.77 77.78 NA 71.43 77.78 62.50 45.16 88.89 88.89 81.82 70.00 NA 80.00 50.00 88.89 85.71 66.67 50.00 87.50 75.00 35.71 83.33 NA 50.00 75.00 75.00 68.75 71.43 60.00 50.00 44.44 100.00 71.43 80.00 74.07 55.00 66.67 75.00 80.00 NA 100.00 58.33 60.00 40.00 90.00 N cassette Syb chr2R - chr2R_6137333_6138383 chr2R_6137333_6138021;chr2R_6138092_6138383 chr2R_6138022_6138091 chr2R_6137005_6137332;chr2R_6138384_6138649 4.22 3.42 4.94 20.99 1.89 2.90 1.12 7.54 3.61 5.04 16.22 3.65 7.72 4.21 4.84 8.06 4.12 6.32 3.96 4.80 16.06 3.56 3.73 4.32 3.90 4.17 4.59 8.99 3.88 4.84 6.71 6.25 6.77 4.64 4.99 2.06 2.60 2.02 3.85 6.51 6.11 3.91 4.29 4.22 6.77 7.64 2.72 12.50 3.40 3.84 3.99 2.93 1.53 3.40 4.49 3.43 1.67 4.65 K jcn_only_AD CG10550 chr3R - chr3R_21133632_21134036;chr3R_21133632_21133902 chr3R_21133632_21134032 chr3R_21133411_21133631;chr3R_21134037_21134116 93.33 NA NA 93.33 NA NA 90.91 100.00 86.96 NA NA NA NA NA NA NA NA NA NA 95.65 NA NA NA NA NA NA 95.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 85.00 NA K cassette Zyx102EF,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1080463_1081366 chr4_1080463_1081118;chr4_1081280_1081366 chr4_1081119_1081279 chr4_1080446_1080462;chr4_1081367_1081379 100.00 100.00 100.00 88.24 NA 100.00 85.00 100.00 100.00 NA 100.00 83.33 100.00 90.00 100.00 100.00 83.33 85.71 90.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 100.00 94.44 100.00 85.71 100.00 80.00 100.00 100.00 100.00 94.74 100.00 100.00 NA 100.00 90.00 100.00 100.00 90.00 93.75 100.00 100.00 100.00 100.00 NA 100.00 100.00 K jcn_only_AA PRL-1,RI_chr2L_16249092_16249188,RI_chr2L_16249092_16249286,RI_chr2L_16249092_16250080,I_chr2L_16250028_16250080 chr2L - chr2L_16250028_16250080;chr2L_16249722_16250080;chr2L_16249707_16250080 chr2L_16249092_16250080 chr2L_16250081_16250158;chr2L_16248992_16249091 1.74 1.74 0.74 1.61 0.00 1.40 2.03 1.20 1.95 2.73 0.68 1.81 2.41 0.32 1.36 1.83 0.90 1.45 1.35 2.11 0.32 4.14 2.29 0.83 2.69 1.02 2.34 2.54 3.28 6.46 2.91 1.33 4.26 1.16 2.94 0.88 1.60 1.53 0.84 3.69 4.00 2.20 2.09 1.28 1.00 2.88 2.37 1.71 2.53 3.74 2.41 2.67 1.71 0.90 0.83 0.98 1.52 4.41 K alternative_donor I_chr3R_17177101_17200781,mod(mdg4),RI_chr3R_17178359_17178534 chr3R - chr3R_17178359_17200781 chr3R_17178359_17178534 chr3R_17178259_17178358;chr3R_17200782_17200881 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 0.00 NA 0.00 NA 50.00 NA 50.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 25.00 16.67 50.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10809 chr3L - chr3L_9852817_9852878 chr3L_9852816_9852817;chr3L_9852878_9852879 chr3L_9851438_9852816;chr3L_9852879_9852989 17.42 NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA NA 11.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG17600,S6kII chrX + chrX_21934339_21934691 chrX_21934338_21934339;chrX_21934691_21934692 chrX_21931848_21934338;chrX_21934692_21935504 8.33 3.23 0.00 6.45 8.70 10.53 6.67 3.85 8.11 0.00 NA 3.12 14.29 NA 5.00 8.00 0.00 12.50 20.00 18.52 0.00 13.79 7.69 6.67 0.00 11.76 0.00 8.33 15.38 11.76 25.00 7.14 6.25 13.04 8.33 6.25 0.00 0.00 9.38 13.89 19.05 11.90 13.33 10.71 21.05 13.33 19.05 NA 10.34 6.06 2.86 7.69 0.00 5.26 22.73 10.71 8.82 13.04 K intron_retention CG7101 chrX + chrX_18725177_18725255 chrX_18725176_18725177;chrX_18725255_18725256 chrX_18724559_18725176;chrX_18725256_18726164 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA NA 5.26 NA NA 0.00 0.00 NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 6.25 3.33 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA 4.35 NA NA 0.00 NA 0.00 NA NA K alternative_donor RFeSP chr2L - chr2L_1612989_1613043 chr2L_1612989_1613039 chr2L_1612495_1612988;chr2L_1613044_1613423 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 K intron_retention CG2177,I_chr4_334269_334329,I_chr4_334269_334505,I_chr4_334439_334505 chr4 - chr4_334269_334324 chr4_334268_334269;chr4_334324_334325 chr4_334169_334268;chr4_334325_334713 30.21 NA 21.43 48.48 NA 36.36 9.52 28.95 27.27 NA 25.00 40.00 35.71 NA 23.53 38.71 46.15 35.00 29.41 13.64 NA NA 33.33 NA NA 30.77 NA NA NA NA 16.67 NA 30.00 34.62 NA NA NA NA NA 29.41 33.33 26.67 33.33 NA NA 30.43 7.14 20.00 50.00 NA 16.67 NA NA NA 30.00 NA 41.67 42.86 K intron_retention I_chrX_1757755_1757801,CG14817,I_chrX_1770939_1771001,RI_chrX_1770945_1771037,RI_chrX_1773382_1773444,trr,I_chrX_1793073_1794406,RI_chrX_1795648_1795745 chrX - chrX_1770945_1771001 chrX_1770944_1770945;chrX_1771001_1771002 chrX_1770845_1770944;chrX_1771002_1771101 0.97 1.39 0.00 2.78 0.00 0.00 2.17 2.06 0.54 0.00 0.61 0.92 0.00 1.64 1.51 1.34 0.00 0.00 0.00 0.94 0.00 3.51 1.24 0.95 0.62 1.12 2.43 3.33 11.45 1.12 0.00 0.50 0.00 1.43 1.40 0.63 1.67 0.71 0.97 2.25 0.59 0.66 0.96 0.56 1.68 1.06 1.09 2.10 0.37 2.21 1.01 0.83 0.99 1.33 0.00 1.85 0.36 1.43 K jcn_only_AA CG32767,RI_chrX_4978019_4978605 chrX - chrX_4976273_4978605 chrX_4978019_4978605 chrX_4978606_4978705;chrX_4975519_4976272 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention I_chr2L_2856176_2856244,RI_chr2L_2856673_2856772,CG2991 chr2L + chr2L_2865578_2866331 chr2L_2865577_2865578;chr2L_2866331_2866332 chr2L_2865482_2865577;chr2L_2866332_2866741 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.48 0.00 0.74 0.59 0.00 0.00 0.00 1.18 0.00 1.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 1.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG17471,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1217104_1217473;chr4_1217104_1217333;chr4_1217104_1217302 chr4_1217104_1217383 chr4_1217009_1217103;chr4_1217474_1217480 50.00 NA 40.00 42.86 NA NA 46.15 46.67 52.94 NA NA 57.14 66.67 50.00 NA 40.00 NA NA 50.00 66.67 NA NA NA NA NA NA NA NA NA NA 66.67 NA NA 36.36 NA NA NA NA NA NA NA 50.00 40.00 NA NA NA NA NA 50.00 NA NA NA NA NA 50.00 NA NA NA K alternative_acceptor Nipsnap,RI_chrX_15965934_15967435 chrX - chrX_15967134_15967435 chrX_15967175_15967435 chrX_15967436_15967464;chrX_15967060_15967133 80.00 92.86 88.89 71.43 50.00 61.54 78.95 84.21 81.82 87.50 77.78 85.71 100.00 64.71 66.67 77.14 66.67 85.71 80.00 84.00 87.50 86.67 93.75 93.33 85.71 85.71 88.89 100.00 NA 63.64 90.00 75.00 NA 65.38 75.00 100.00 76.47 85.71 100.00 69.23 NA 72.00 NA 76.47 85.71 91.67 78.57 77.78 66.67 76.92 89.47 82.35 72.73 68.75 66.67 78.57 85.00 69.23 K jcn_only_AA l(1)G0136 chrX + chrX_15629208_15629279 chrX_15629208_15629276 chrX_15629132_15629207;chrX_15629280_15629354 10.75 10.62 12.37 11.71 13.43 9.64 11.71 9.00 10.00 12.82 11.86 12.50 14.81 13.64 9.21 6.90 8.33 14.52 13.25 10.82 7.35 5.56 13.64 17.76 10.75 2.99 9.59 9.04 15.13 9.21 13.79 10.42 10.64 11.65 8.89 14.46 14.59 3.94 10.75 8.82 10.16 10.17 8.16 15.29 10.24 13.98 12.22 12.32 13.38 9.57 14.04 11.76 15.73 10.38 8.51 7.55 13.86 10.61 K intron_retention Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8463480_8463530 chr3L_8463479_8463480;chr3L_8463530_8463531 chr3L_8463385_8463479;chr3L_8463531_8463537 2.38 NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.88 NA NA 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG3760,CG3770,CG12851 chr2R + chr2R_20826741_20826793 chr2R_20826745_20826793 chr2R_20826794_20826860;chr2R_20826672_20826740 0.00 1.72 0.00 0.00 0.00 1.27 0.00 0.00 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 1.12 0.95 1.47 2.61 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.52 0.72 0.55 0.00 1.09 0.43 0.46 0.00 0.00 0.00 0.45 0.00 0.00 0.72 0.65 0.00 1.27 1.03 0.48 K jcn_only_AD sec63,RI_chr3L_7354705_7354843 chr3L + chr3L_7354132_7354843 chr3L_7354705_7354843 chr3L_7354844_7354943;chr3L_7353532_7354131 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 2.38 1.01 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.78 0.00 1.89 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.79 0.72 0.00 0.00 1.65 0.49 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.43 0.62 0.00 0.00 0.00 1.02 0.71 0.00 0.00 0.21 K alternative_acceptor Fibp,RI_chr3L_19810268_19810326 chr3L - chr3L_19809762_19809819;chr3L_19809775_19809819 chr3L_19809780_19809819 chr3L_19809820_19809920;chr3L_19809693_19809761 0.00 0.00 0.00 2.44 0.00 4.35 4.17 0.00 3.12 NA 0.00 3.33 NA 0.00 5.00 0.00 0.00 0.00 6.45 0.00 NA 0.00 0.00 0.00 7.14 0.00 3.57 NA 16.67 NA 12.50 0.00 0.00 0.00 NA 5.26 4.55 0.00 0.00 0.00 11.76 2.70 7.69 0.00 0.00 2.70 0.00 0.00 5.56 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 3.70 K jcn_only_AD Sod,RI_chr3L_11105949_11106366,I_chr3L_11105949_11106370 chr3L - chr3L_11105949_11106673 chr3L_11105949_11106631 chr3L_11105849_11105948;chr3L_11106674_11106838 0.00 0.33 0.00 0.71 0.56 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.36 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.40 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor bwa,I_chr2L_20073310_20073377 chr2L + chr2L_20066899_20069047 chr2L_20066903_20069047 chr2L_20069048_20069304;chr2L_20066389_20066898 0.95 0.00 2.00 1.94 0.00 1.67 0.00 0.00 0.93 1.35 0.00 3.06 0.00 1.75 0.00 1.47 0.00 2.27 0.00 4.12 0.00 0.66 3.66 1.52 0.00 1.82 0.00 3.03 2.26 2.15 2.44 0.00 0.95 0.00 0.00 0.00 0.93 0.00 3.23 1.24 0.98 1.94 0.00 1.23 0.00 0.95 0.00 0.83 1.04 2.25 0.00 0.00 0.00 2.78 3.92 0.00 2.00 2.61 K jcn_only_AA l(2)03709,I_chr2R_14707617_14707700,I_chr2R_14708048_14708095 chr2R + chr2R_14707030_14707128 chr2R_14707030_14707125 chr2R_14707024_14707029;chr2R_14707129_14707270 98.81 100.00 99.22 100.00 98.20 97.89 100.00 98.16 98.16 96.88 97.48 98.92 100.00 95.71 98.08 98.95 100.00 99.11 99.16 98.81 99.17 100.00 100.00 100.00 100.00 97.47 NA NA 94.87 100.00 99.38 95.77 98.82 99.35 NA NA 90.62 100.00 92.86 93.98 97.87 97.90 99.05 100.00 98.79 97.73 NA 98.68 97.29 NA 96.43 96.77 100.00 NA 98.77 NA 96.43 99.09 K intron_retention Ctr1A,I_chrX_6557804_6559032,I_chrX_6558480_6559032 chrX + chrX_6559112_6559194 chrX_6559111_6559112;chrX_6559194_6559195 chrX_6559033_6559111;chrX_6559195_6559406 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 K alternative_donor Dystrophin,noncoding_17759,I_chr3R_15289404_15290179 chr3R + chr3R_15289404_15290221;chr3R_15289437_15290221 chr3R_15289362_15290221 chr3R_15290222_15290279;chr3R_15289350_15289361 8.01 NA 12.50 7.69 NA NA 0.00 6.25 18.75 NA NA 0.00 10.00 12.50 0.00 6.67 0.00 NA 11.11 15.38 NA NA 11.11 NA NA 0.00 NA NA NA 0.00 9.09 NA 12.50 20.00 NA 0.00 16.67 NA NA 0.00 NA 0.00 11.11 0.00 NA NA NA 0.00 8.33 NA NA NA NA NA 10.00 NA NA NA K intron_retention alphaTub84D chr3R + chr3R_3356710_3356915 chr3R_3356709_3356710;chr3R_3356915_3356916 chr3R_3356377_3356709;chr3R_3356916_3358873 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 100.00 100.00 100.00 100.00 98.28 100.00 100.00 100.00 100.00 97.22 97.67 100.00 100.00 98.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 99.13 98.25 100.00 100.00 99.09 100.00 100.00 99.02 100.00 98.61 100.00 100.00 100.00 100.00 100.00 100.00 99.25 K intron_retention CG3635,I_chr2L_22179420_22179486 chr2L + chr2L_22175603_22182737 chr2L_22175602_22175603;chr2L_22182737_22182738 chr2L_22175591_22175602;chr2L_22182738_22183329 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA NA 100.00 100.00 93.75 100.00 NA NA 100.00 NA 100.00 NA K intron_retention d4 chr2R + chr2R_1182563_1182620 chr2R_1182562_1182563;chr2R_1182620_1182621 chr2R_1182302_1182562;chr2R_1182621_1183461 23.33 17.86 14.29 27.78 26.67 14.81 17.07 25.00 17.65 36.36 20.69 27.59 21.05 29.17 29.03 26.83 17.65 26.32 36.36 24.39 28.00 21.05 22.58 19.23 22.22 20.83 24.32 25.00 24.39 24.14 40.00 37.84 34.69 20.00 13.33 23.08 17.65 14.81 12.90 26.19 24.14 25.49 23.81 15.79 34.78 38.89 13.89 41.67 23.26 15.38 16.67 26.32 21.95 16.67 23.33 19.35 13.79 41.07 K alternative_acceptor CG17471,RI_chr4_1213397_1214333,RI_chr4_1213397_1216053,RI_chr4_1214248_1214333,I_chr4_1214293_1214333,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1214248_1214333;chr4_1214281_1214333 chr4_1214293_1214333 chr4_1214334_1214402;chr4_1214193_1214247 0.00 0.00 0.00 4.55 0.00 0.00 0.00 1.96 1.22 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 1.85 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 5.26 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 3.03 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention E(bx),I_chr3L_240127_240176,I_chr3L_246324_246699 chr3L - chr3L_240114_240176 chr3L_240113_240114;chr3L_240176_240177 chr3L_240027_240113;chr3L_240177_240276 79.05 75.00 75.41 87.14 79.55 78.05 57.89 80.00 75.22 68.29 91.89 78.00 78.00 83.64 84.38 81.40 70.21 74.51 74.24 79.38 81.82 77.42 86.81 74.55 80.77 88.71 91.25 92.68 74.12 85.71 82.76 81.82 90.07 78.00 88.00 73.33 73.08 76.47 66.10 65.14 85.25 79.05 79.55 69.23 73.58 80.65 75.00 72.33 87.27 89.47 75.00 78.12 80.00 63.64 81.01 80.49 72.50 80.53 K intron_retention CG3493 chr2R - chr2R_19263990_19264054 chr2R_19263989_19263990;chr2R_19264054_19264055 chr2R_19263814_19263989;chr2R_19264055_19264142 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA osa chr3R - chr3R_13521834_13522091 chr3R_13521873_13522091 chr3R_13522092_13522308;chr3R_13521645_13521833 83.78 85.23 86.62 84.57 80.17 85.98 83.78 81.05 80.94 81.63 83.78 79.90 80.81 85.58 87.68 80.00 74.14 84.35 81.36 82.26 76.70 83.25 85.96 88.15 83.05 82.86 87.50 82.35 85.06 83.82 84.31 86.84 79.79 82.16 83.43 80.56 87.23 84.82 86.67 84.54 87.39 83.27 80.61 85.31 79.61 86.36 85.42 82.73 83.20 84.05 86.35 85.43 80.87 84.42 83.45 86.36 88.46 78.00 K intron_retention CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8185279_8186116 chr2L_8185278_8185279;chr2L_8186116_8186117 chr2L_8185221_8185278;chr2L_8186117_8186197 92.86 NA 84.62 92.86 NA 100.00 96.30 95.24 77.27 NA 100.00 90.00 100.00 93.75 94.12 94.74 100.00 84.62 75.00 85.71 90.00 88.89 86.67 75.00 91.67 90.00 94.12 94.12 100.00 83.33 100.00 100.00 94.44 88.00 91.67 83.33 75.00 84.62 94.44 100.00 100.00 87.50 NA 91.30 93.75 92.86 NA 96.15 88.46 90.00 94.12 100.00 NA 90.00 81.25 NA 100.00 100.00 K intron_retention klar,I_chr3L_462559_472609,RI_chr3L_517594_539898 chr3L - chr3L_443848_443911 chr3L_443847_443848;chr3L_443911_443912 chr3L_443393_443847;chr3L_443912_444011 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2388436;chrX_2388671_2389073;chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2395659 chrX_2388437_2388670;chrX_2389074_2389271;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2395660_2395759 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 3.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 1.12 0.00 1.25 0.99 0.00 0.73 0.00 1.39 0.00 0.00 NA 0.78 0.56 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention wdb,I_chr3R_23394314_23406731,I_chr3R_23394314_23406794,I_chr3R_23394314_23407159,RI_chr3R_23394314_23407186,I_chr3R_23394314_23407412,I_chr3R_23394314_23407715,I_chr3R_23394314_23407721,RI_chr3R_23406048_23406731,RI_chr3R_23406048_23406794,I_chr3R_23406048_23406928,RI_chr3R_23406048_23407402 chr3R - chr3R_23406048_23406865 chr3R_23406047_23406048;chr3R_23406865_23406866 chr3R_23405948_23406047;chr3R_23406866_23406894 79.54 NA NA NA NA NA 72.73 NA 90.91 NA NA 81.82 NA NA NA NA NA NA NA 90.00 NA 77.27 NA NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA 63.64 NA NA NA NA NA NA NA NA NA K jcn_only_AA Cnx99A,I_chr3R_25144335_25145173,I_chr3R_25145243_25145309,I_chr3R_25145256_25145426 chr3R - chr3R_25145243_25145309 chr3R_25145256_25145309 chr3R_25145310_25145319;chr3R_25145174_25145242 87.50 NA 81.82 88.10 NA NA NA 87.69 100.00 NA 92.00 87.50 NA NA 90.00 83.33 100.00 76.19 80.00 93.33 92.00 85.71 NA NA NA NA NA NA NA NA 95.00 80.00 85.42 87.50 NA NA NA NA NA 85.00 NA 79.66 NA 85.19 85.71 100.00 NA 90.91 88.10 NA NA NA NA NA 88.89 NA NA 77.50 K alternative_donor F_chr2L_15260838_15261717,cul-3 chr2L - chr2L_15271144_15271322;chr2L_15271144_15271202 chr2L_15271144_15271833 chr2L_15270905_15271143;chr2L_15271834_15271894 78.95 76.92 79.17 84.11 80.00 78.95 81.73 81.44 79.28 66.67 84.38 79.81 81.13 84.44 80.00 77.91 80.39 82.22 84.85 77.78 84.44 56.82 76.56 82.14 75.00 87.30 77.97 53.57 42.86 72.92 73.08 63.16 58.82 82.18 79.55 76.47 75.68 82.86 80.49 70.49 66.67 82.83 82.61 78.18 76.19 66.67 75.00 59.09 83.49 78.38 74.55 85.00 72.22 89.47 80.95 79.31 74.07 60.71 K intron_retention CG3632,RI_chrX_16195880_16196242 chrX + chrX_16190917_16191682 chrX_16190916_16190917;chrX_16191682_16191683 chrX_16190893_16190916;chrX_16191683_16191751 92.31 NA NA 88.89 NA NA 100.00 94.44 94.12 NA NA 80.00 NA NA NA 100.00 NA NA 83.33 92.31 NA 100.00 90.00 88.89 88.89 NA 86.67 NA NA NA 100.00 NA NA 92.86 NA NA NA NA 90.00 90.00 NA 91.67 NA 100.00 100.00 92.86 88.89 88.89 92.31 88.89 92.31 NA NA NA NA NA NA 100.00 K intron_retention Pvr,I_chr2L_8226604_8228082,I_chr2L_8229001_8230124,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8226607_8227682 chr2L_8226606_8226607;chr2L_8227682_8227683 chr2L_8226458_8226606;chr2L_8227683_8227720 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 96.43 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 K jcn_only_AD Rho1,I_chr2R_11990455_11992537,RI_chr2R_11991687_11992537 chr2R + chr2R_11990362_11991115;chr2R_11990326_11991115;chr2R_11990814_11991115 chr2R_11990398_11991115 chr2R_11991116_11991279;chr2R_11990232_11990325 58.45 NA NA 50.00 NA NA 55.00 70.00 54.76 NA NA 54.84 NA NA 39.13 70.59 NA NA NA 67.86 NA NA NA NA NA NA NA NA 41.67 NA NA NA NA 64.52 NA NA NA NA NA NA NA 62.50 NA NA NA 40.74 NA NA 65.00 NA 61.90 NA NA NA 65.22 NA NA 36.67 K alternative_acceptor l(2)s5379,I_chr2L_2227282_2227349,I_chr2L_2229179_2229265 chr2L + chr2L_2227282_2229265 chr2L_2227282_2227349 chr2L_2227182_2227281;chr2L_2229266_2229365 0.54 0.00 0.64 0.35 0.00 0.83 1.27 0.34 0.88 0.00 0.93 0.84 0.86 0.00 0.54 1.04 0.86 0.76 0.58 0.95 0.87 0.73 0.79 0.99 0.00 0.00 1.01 1.54 0.55 0.00 0.59 0.00 0.39 0.37 1.14 0.00 0.00 0.00 0.00 0.32 0.00 0.76 0.88 0.74 0.49 0.32 0.00 0.00 0.69 0.00 0.88 0.00 0.00 0.00 0.56 1.04 0.00 0.23 K jcn_only_AD Dcp2,F_chr3L_15815909_15816023,F_chr3L_15817090_15817547 chr3L - chr3L_15817090_15818570;chr3L_15817090_15817547 chr3L_15817090_15819385 chr3L_15816990_15817089;chr3L_15819386_15819487 9.96 3.57 7.55 23.66 25.81 10.64 10.59 14.77 6.62 30.00 21.21 18.57 19.57 13.43 5.36 15.48 7.69 12.50 4.44 16.67 17.95 21.11 4.81 3.45 10.91 30.95 6.00 2.22 13.04 11.11 25.53 NA 11.32 10.13 3.85 9.33 5.13 1.33 4.05 4.76 NA 12.62 20.00 2.44 NA 0.00 2.44 15.56 9.17 4.00 4.82 1.85 NA 11.11 9.80 2.63 0.00 NA K jcn_only_AD Arf102F,RI_chr4_1144958_1145393,I_chr4_1152220_1152710,I_chr4_1152585_1152687 chr4 + chr4_1145520_1145575 chr4_1145524_1145575 chr4_1145576_1145637;chr4_1145453_1145519 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.41 0.00 0.00 0.38 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.54 0.00 1.61 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.40 0.00 1.52 0.00 2.90 0.88 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.69 0.00 1.49 1.20 K intron_retention CG5059,I_chr3L_20508909_20508960,I_chr3L_20509233_20511440 chr3L - chr3L_20508887_20508960 chr3L_20508886_20508887;chr3L_20508960_20508961 chr3L_20508825_20508886;chr3L_20508961_20509060 1.30 0.00 3.28 0.00 0.00 3.03 4.00 3.70 3.66 0.00 0.00 2.42 0.00 3.45 0.00 0.00 1.61 1.09 3.23 1.78 0.00 1.82 3.80 4.11 0.00 0.00 4.29 9.68 6.78 0.00 0.00 0.00 1.89 2.13 0.00 0.00 0.00 0.00 0.00 2.50 2.04 1.64 0.00 0.00 0.00 2.56 0.00 8.00 1.68 0.00 1.30 2.00 1.72 0.00 5.97 0.00 1.02 5.13 K jcn_only_AA Gp150,I_chr2R_18205316_18205386,I_chr2R_18213233_18213308 chr2R + chr2R_18205243_18205386;chr2R_18205243_18212679 chr2R_18205243_18205338 chr2R_18205216_18205242 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention MrgBP,CG8258 chr2R - chr2R_4788346_4788397 chr2R_4788345_4788346;chr2R_4788397_4788398 chr2R_4788071_4788345;chr2R_4788398_4788877 0.93 0.00 1.54 5.26 0.00 0.00 0.00 1.20 1.80 4.76 0.00 0.00 2.00 4.08 4.29 0.00 1.96 5.00 0.00 2.60 0.00 3.03 0.00 0.00 0.00 0.00 2.41 3.26 4.76 0.00 0.00 0.00 1.94 1.09 0.00 1.47 0.00 0.00 0.94 0.00 0.94 0.00 0.00 0.00 2.37 3.31 2.41 0.00 3.03 0.00 0.93 0.00 2.35 1.32 0.00 0.79 1.48 1.18 K intron_retention CG42550 chr3R - chr3R_3826590_3826647 chr3R_3826589_3826590;chr3R_3826647_3826648 chr3R_3826527_3826589;chr3R_3826648_3826710 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 96.88 NA 100.00 100.00 95.65 NA NA 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 90.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 K jcn_only_AA Myo31DF,I_chr2L_10506249_10506683,I_chr2L_10506446_10506542 chr2L - chr2L_10506107_10506683 chr2L_10506249_10506683 chr2L_10506684_10506780;chr2L_10505926_10506106 1.54 3.70 0.95 0.00 0.00 0.88 10.11 0.65 1.75 2.88 1.33 0.00 1.61 4.39 1.50 0.66 3.28 0.91 1.01 1.98 1.61 3.80 1.54 3.70 3.08 5.62 4.50 0.57 7.14 1.79 1.19 1.49 6.86 1.88 2.04 0.00 0.69 1.94 0.90 2.31 5.95 0.98 3.33 0.90 0.00 2.48 0.00 1.43 1.03 2.41 2.67 0.00 0.00 0.00 1.54 3.53 1.22 0.84 K intron_retention Nak chr2L - chr2L_18962792_18962884 chr2L_18962791_18962792;chr2L_18962884_18962885 chr2L_18962646_18962791;chr2L_18962885_18963115 90.91 90.00 NA 95.00 NA NA 100.00 93.33 94.44 NA NA 83.33 NA 87.50 91.67 100.00 NA NA 100.00 92.86 88.89 NA 90.91 90.91 88.89 69.23 92.86 88.89 NA 70.00 NA NA NA 85.71 90.00 NA NA NA 100.00 76.92 NA 94.12 NA NA NA NA NA NA 92.86 88.89 91.67 72.73 NA NA 90.00 100.00 NA NA K jcn_only_AA CG2083,I_chr3L_2796679_2820058,noncoding_10229,I_chr3L_2821347_2851558,RI_chr3L_2833393_2851558,CG14952,CG9973 chr3L - chr3L_2796679_2851558 chr3L_2796682_2851558 chr3L_2851559_2851658;chr3L_2796628_2796678 30.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG32016,I_chr4_972691_972763,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_972704_972763;chr4_972719_972763 chr4_972691_972763 chr4_972764_972863;chr4_972619_972690 0.00 0.00 0.00 0.00 0.00 5.88 2.44 0.00 1.61 0.00 4.76 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 5.26 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 5.56 0.00 0.00 4.35 4.55 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1358,I_chr2R_3485171_3489936 chr2R - chr2R_3485171_3485720 chr2R_3485170_3485171;chr2R_3485720_3485721 chr2R_3485071_3485170;chr2R_3485721_3485862 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 1.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA REG chrX + chrX_13106426_13106496 chrX_13106426_13106482 chrX_13106389_13106425;chrX_13106497_13106991 2.80 1.36 3.93 3.22 3.47 2.80 1.52 3.31 2.73 3.40 1.54 3.28 2.96 2.86 3.73 2.83 4.12 2.11 2.83 2.22 2.38 1.79 4.09 1.49 3.12 3.83 1.96 0.68 1.05 3.53 5.29 3.74 3.45 2.02 1.33 4.84 2.70 1.45 3.60 0.90 9.52 3.20 1.83 2.27 1.90 2.68 1.90 6.25 2.64 2.11 1.16 2.11 3.37 2.33 3.35 2.94 3.00 1.98 K alternative_acceptor MED31,CG18271,I_chr3R_468381_468483,CE_chr3R_468381_468504 chr3R + chr3R_468381_468483 chr3R_468381_468472 chr3R_468291_468380;chr3R_468484_468514 100.00 100.00 100.00 98.18 100.00 100.00 100.00 100.00 100.00 96.43 96.00 98.55 97.50 100.00 100.00 100.00 100.00 97.06 100.00 96.10 97.06 98.04 98.46 98.04 100.00 100.00 98.04 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 97.67 95.24 100.00 100.00 98.73 100.00 100.00 96.67 96.15 100.00 98.80 98.21 98.57 98.51 100.00 96.67 100.00 97.67 100.00 97.83 100.00 98.57 99.02 K intron_retention EF_chr2R_8548702_8595112,CG8768 chr2R - chr2R_8580029_8580087 chr2R_8580028_8580029;chr2R_8580087_8580088 chr2R_8579586_8580028;chr2R_8580088_8580206 17.65 5.56 NA NA NA NA 16.67 5.56 11.54 NA NA 22.73 NA 7.14 NA NA NA NA NA 23.08 NA 52.63 40.00 20.00 46.15 NA 10.53 NA 62.50 NA 45.45 NA NA 13.33 25.00 43.75 7.69 NA 23.08 25.00 NA 11.11 NA 28.57 14.29 22.22 8.33 NA 11.76 NA 12.50 17.65 NA NA NA 19.05 6.67 14.29 K alternative_acceptor CG3499,I_chr2R_18772777_18772819 chr2R - chr2R_18772317_18772430 chr2R_18772326_18772430 chr2R_18772431_18772523;chr2R_18772243_18772316 29.17 29.03 25.00 45.00 33.33 26.32 24.00 28.36 31.17 43.75 32.00 26.42 30.95 21.88 25.00 30.77 30.56 29.17 26.67 27.45 25.93 32.00 30.61 19.51 56.25 35.71 17.54 17.39 30.00 22.22 30.77 31.58 37.04 27.12 24.00 27.27 28.57 25.81 35.71 34.78 44.00 27.69 30.00 17.50 23.08 30.23 22.73 25.00 31.48 32.43 28.21 26.47 29.41 15.79 37.50 32.35 33.33 29.63 K jcn_only_AA CG17912,I_chr2L_16749189_16749266 chr2L + chr2L_16749189_16749290 chr2L_16749189_16749266 chr2L_16749153_16749188;chr2L_16749291_16749366 2.33 0.00 4.35 12.50 3.57 0.00 7.50 6.45 2.25 1.89 10.00 2.33 NA 4.00 0.00 0.00 NA 0.00 NA 4.11 0.00 7.89 0.78 1.08 8.51 NA 0.00 3.39 5.56 2.35 10.00 NA 2.38 0.00 0.00 11.11 3.03 1.85 0.88 3.09 8.70 2.99 NA 1.25 0.00 2.13 0.00 5.41 3.77 0.00 1.35 6.38 5.88 0.00 0.00 1.92 1.52 6.06 K alternative_acceptor Syx7,I_chr3L_21439901_21439962 chr3L + chr3L_21439476_21439542 chr3L_21439476_21439523 chr3L_21439298_21439475;chr3L_21439543_21439612 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG1316 chr3L + chr3L_4285921_4286171 chr3L_4286002_4286171 chr3L_4286172_4286865;chr3L_4285847_4285920 3.57 3.66 3.08 0.98 7.27 3.57 3.67 3.25 2.49 4.41 2.00 2.56 3.57 4.69 3.30 4.42 2.08 3.39 5.00 4.03 2.27 2.00 4.60 3.61 3.39 1.96 6.85 4.48 10.08 2.26 2.90 2.63 1.27 3.94 2.33 5.41 4.60 5.71 3.12 3.75 2.47 3.75 2.04 4.95 2.90 4.15 4.23 2.38 3.95 3.06 6.10 0.00 1.32 5.88 5.71 3.61 2.56 1.59 K intron_retention p47,E_chr2R_3353340_3353583,Aldh-III,I_chr2R_3356541_3356614,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3353181_3353283 chr2R_3353180_3353181;chr2R_3353283_3353284 chr2R_3352836_3353180;chr2R_3353284_3353339 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 2.15 0.63 1.82 0.00 0.00 1.94 0.00 1.15 1.06 0.00 0.00 0.00 0.88 0.00 0.00 0.70 0.00 0.00 2.80 0.00 0.00 0.74 2.47 0.00 0.00 0.00 1.68 2.29 0.00 2.63 1.28 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Arf51F,I_chr2R_11210733_11210953 chr2R + chr2R_11210247_11210628 chr2R_11210246_11210247;chr2R_11210628_11210629 chr2R_11209979_11210246;chr2R_11210629_11210646 59.41 NA NA NA NA NA NA 50.00 58.33 NA NA 42.86 NA NA NA 66.67 NA NA NA 58.82 NA NA NA NA 50.00 NA NA 88.89 76.92 NA NA NA NA 60.00 NA NA NA NA NA 50.00 NA 69.23 NA NA 43.75 NA NA NA 88.89 NA 87.50 NA NA NA NA NA 54.55 88.89 K intron_retention rgr,I_chr2R_4488735_4489955 chr2R + chr2R_4496900_4496959 chr2R_4496899_4496900;chr2R_4496959_4496960 chr2R_4496560_4496899;chr2R_4496960_4497352 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Vinc,I_chrX_2114558_2116113 chrX - chrX_2112129_2114405 chrX_2112128_2112129;chrX_2114405_2114406 chrX_2109938_2112128;chrX_2114406_2114557 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD I_chr2L_6323791_6325172,Gef26,I_chr2L_6330719_6330770 chr2L + chr2L_6323994_6325172 chr2L_6324119_6325172 chr2L_6325173_6325272;chr2L_6323851_6323993 98.44 NA NA NA NA NA 96.88 100.00 95.24 NA NA NA NA NA NA NA NA NA NA 90.48 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 92.86 NA NA 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 82.61 NA NA NA NA NA NA NA NA 95.24 K intron_retention RI_chrX_7172561_7252693,CG1677,I_chrX_7178792_7252693,Atg5 chrX - chrX_7217297_7217378 chrX_7217296_7217297;chrX_7217378_7217379 chrX_7217191_7217296;chrX_7217379_7217478 0.00 0.00 5.00 0.00 0.00 4.65 2.56 0.00 2.22 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 1.59 2.00 11.11 11.76 0.00 0.00 12.00 0.00 4.44 NA 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 2.78 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG42374,CG9666,noncoding_13463 chr3L + chr3L_19257723_19257927 chr3L_19257723_19257780 chr3L_19257561_19257722;chr3L_19257928_19258543 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette CG42595,I_chr2RHet_3155517_3174709,RI_chr2RHet_3175044_3179353,RI_chr2RHet_3179300_3179586,I_chr2RHet_3179481_3179586 chr2RHet - chr2RHet_3179300_3179586;chr2RHet_3175044_3179586 chr2RHet_3179300_3179353,chr2RHet_3175044_3179353;chr2RHet_3179481_3179586 chr2RHet_3179354_3179480 chr2RHet_3174944_3175043;chr2RHet_3179587_3179598 85.71 77.78 72.73 80.95 NA 85.71 96.00 86.21 89.19 NA 57.14 60.00 87.50 81.82 55.56 77.50 71.43 66.67 93.33 86.36 50.00 NA 100.00 85.71 100.00 NA 85.71 NA NA 75.00 90.00 NA 100.00 82.76 100.00 85.71 NA 100.00 NA 100.00 NA 80.00 90.91 92.31 NA 100.00 NA 62.50 84.38 NA 85.71 NA NA NA 60.00 NA 83.33 69.23 K alternative_donor bon chr3R + chr3R_16434258_16434353 chr3R_16434276_16434353 chr3R_16434354_16434483;chr3R_16433872_16434257 55.88 65.22 71.43 50.00 66.67 50.00 71.43 38.46 62.50 65.22 50.00 53.33 53.33 50.00 52.17 53.85 43.75 59.09 61.54 60.00 58.82 59.26 50.00 61.54 47.37 45.00 30.00 42.86 65.22 50.00 53.33 45.00 57.50 55.88 55.56 44.44 51.06 50.00 57.14 58.33 47.06 54.55 69.23 60.87 57.14 81.25 63.64 60.00 68.97 42.86 53.57 38.10 64.29 53.85 71.43 56.25 72.73 56.67 K jcn_only_AD CG8963,I_chr2R_12906431_12906583,I_chr2R_12906930_12906989 chr2R - chr2R_12906431_12906937 chr2R_12906431_12906711 chr2R_12906331_12906430;chr2R_12906938_12907019 100.00 100.00 98.65 100.00 98.04 100.00 97.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.86 100.00 97.67 100.00 97.37 100.00 100.00 96.15 100.00 100.00 100.00 98.97 100.00 98.55 100.00 100.00 100.00 100.00 100.00 99.12 100.00 98.53 98.53 100.00 100.00 100.00 100.00 99.22 100.00 100.00 100.00 100.00 100.00 99.07 100.00 100.00 98.89 100.00 97.96 100.00 98.89 100.00 97.92 100.00 K alternative_donor CG3683 chr2R + chr2R_20551970_20552030 chr2R_20551980_20552030 chr2R_20552031_20552202;chr2R_20551911_20551969 55.00 NA NA 70.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA 46.15 NA NA NA NA NA NA NA 50.00 50.00 NA NA NA NA NA NA NA NA 69.23 K intron_retention CG3305,CREI_chr2L_21573959_21574786 chr2L + chr2L_21576187_21576242 chr2L_21576186_21576187;chr2L_21576242_21576243 chr2L_21576118_21576186;chr2L_21576243_21576325 0.00 0.00 0.00 0.36 0.52 0.42 0.08 0.37 0.21 0.00 0.00 0.27 0.00 0.32 0.15 0.19 0.12 0.33 0.24 0.32 0.00 0.00 0.00 0.00 0.00 0.33 0.44 0.57 0.45 0.00 0.16 0.00 0.00 0.32 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.43 0.32 0.00 0.00 0.44 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 K intron_retention Pp2A-29B,I_chr2L_8367210_8367311,I_chr2L_8369561_8369715 chr2L + chr2L_8367250_8367311 chr2L_8367249_8367250;chr2L_8367311_8367312 chr2L_8367096_8367249;chr2L_8367312_8367379 0.00 0.00 0.00 0.77 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 1.11 0.90 0.00 0.00 0.74 0.00 0.00 0.00 0.93 0.00 0.19 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette CG1021,I_chr3R_2217711_2231099,I_chr3R_2217711_2231390,RI_chr3R_2217711_2231463,I_chr3R_2217742_2218601,I_chr3R_2217742_2219453,I_chr3R_2218465_2231390,RI_chr3R_2218465_2231463,I_chr3R_2218682_2231463,I_chr3R_2219634_2231390,I_chr3R_2231383_2231463 chr3R - chr3R_2217711_2231099 chr3R_2217711_2218601;chr3R_2218682_2219453;chr3R_2219634_2231099 chr3R_2218602_2218681;chr3R_2219454_2219633 chr3R_2217642_2217710;chr3R_2231100_2231199 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.10 100.00 100.00 100.00 100.00 94.44 92.31 92.31 100.00 100.00 100.00 100.00 94.44 100.00 93.75 100.00 100.00 93.75 96.43 100.00 100.00 100.00 100.00 73.33 93.33 100.00 95.24 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 95.83 100.00 K alternative_acceptor Ance,Ance-2 chr2L + chr2L_13905719_13906565 chr2L_13905719_13906460 chr2L_13905672_13905718;chr2L_13906566_13907172 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA K intron_retention CG6463,I_chr3L_10686961_10687096 chr3L - chr3L_10686968_10687096 chr3L_10686967_10686968;chr3L_10687096_10687097 chr3L_10686806_10686967;chr3L_10687097_10687196 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.99 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ced-6,I_chr2R_5324717_5324924,I_chr2R_5328640_5328696 chr2R - chr2R_5324304_5324924 chr2R_5324303_5324304;chr2R_5324924_5324925 chr2R_5323867_5324303;chr2R_5324925_5325024 1.46 0.78 1.26 1.28 0.82 1.55 1.68 1.46 1.31 4.35 1.15 1.16 1.32 1.19 1.57 1.36 1.08 1.13 1.33 1.41 1.41 2.04 1.08 1.56 1.59 0.62 1.68 4.64 7.26 1.07 1.10 3.35 3.94 1.69 2.51 1.72 1.07 1.30 1.35 1.67 2.67 1.15 1.77 1.46 5.49 3.23 1.93 3.35 0.89 1.40 1.12 1.15 2.92 2.39 0.96 1.93 3.72 3.57 K alternative_donor 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5987603_5991760,I_chr2R_5988662_5991760,I_chr2R_5988666_5991760,I_chr2R_5988919_5991760,I_chr2R_5988931_5991760,I_chr2R_5990647_5991760,I_chr2R_5991249_5991760,I_chr2R_5991689_5991760,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5987356_5991760;chr2R_5987237_5991760 chr2R_5987244_5991760 chr2R_5991761_5991860;chr2R_5987235_5987236 38.42 34.91 41.53 42.75 60.56 38.15 34.56 42.98 51.26 20.00 44.93 38.42 48.56 41.23 42.46 44.08 52.31 54.75 40.85 49.05 45.00 34.92 28.07 37.00 32.97 33.10 25.58 23.33 35.85 24.56 40.73 39.66 33.71 40.66 10.34 9.23 59.18 40.62 36.84 32.53 28.57 43.60 44.06 27.59 42.86 21.18 32.97 29.90 40.25 39.33 19.35 43.56 22.22 13.73 41.99 33.98 43.00 29.73 K intron_retention CG42270,I_chrX_17615384_17615455,I_chrX_17639729_17640603 chrX + chrX_17644882_17645062 chrX_17644881_17644882;chrX_17645062_17645063 chrX_17644587_17644881;chrX_17645063_17645343 2.84 5.03 3.70 1.41 0.00 0.00 5.49 4.29 3.21 3.10 0.00 3.81 5.56 3.77 2.53 3.45 0.00 4.76 1.56 1.03 2.67 3.15 2.64 3.49 2.04 0.00 2.84 3.37 2.82 2.97 1.09 2.96 2.46 3.06 2.76 2.96 2.31 2.84 2.82 3.89 4.17 2.82 3.57 2.16 1.63 2.01 3.02 1.18 3.67 4.11 2.90 2.86 1.32 2.70 2.27 3.16 2.94 1.06 K alternative_donor noncoding_10144,I_chr3L_2378250_2402554,CG13800,CI_chr3L_2400617_2402554,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2388782_2402554 chr3L_2400617_2402554 chr3L_2402555_2402654;chr3L_2388717_2388781 0.00 0.00 NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA 0.00 K intron_retention CaMKII,I_chr4_1069766_1069812,I_chr4_1071236_1071307,RI_chr4_1071236_1071315,I_chr4_1071489_1071884,RI_chr4_1071489_1071968,I_chr4_1071569_1071884,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1071236_1071319 chr4_1071235_1071236;chr4_1071319_1071320 chr4_1071136_1071235;chr4_1071320_1071385 0.00 NA 0.00 1.92 NA NA 2.86 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 6.67 NA NA NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention Kdm4B,seq chr2R - chr2R_9074038_9074104 chr2R_9074037_9074038;chr2R_9074104_9074105 chr2R_9073778_9074037;chr2R_9074105_9074427 0.00 NA 0.00 NA NA NA 0.00 0.00 6.12 NA NA 0.00 0.00 0.00 0.00 3.57 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 7.14 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention Tao-1,I_chrX_19471628_19472934 chrX - chrX_19471628_19472934 chrX_19471627_19471628;chrX_19472934_19472935 chrX_19471528_19471627;chrX_19472935_19473034 80.47 NA NA 53.33 NA NA NA 80.00 81.25 NA NA 85.71 NA 72.73 NA 70.00 NA NA NA 90.00 NA 88.57 66.67 NA NA 87.50 77.78 NA 90.00 88.89 52.63 NA 71.43 73.33 88.89 NA NA NA NA 80.95 NA 87.50 NA NA NA NA NA 92.31 78.57 NA NA NA NA NA 77.78 NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2395659 chrX_2388671_2389073;chrX_2389272_2389644;chrX_2389762_2392054;chrX_2392149_2392515;chrX_2392665_2395659 chrX_2389074_2389271;chrX_2389645_2389761;chrX_2392055_2392148;chrX_2392516_2392664 chrX_2388641_2388670;chrX_2395660_2395759 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RpS11,I_chr2R_8087545_8087625,I_chr2R_8087545_8087698,I_chr2R_8087747_8088193 chr2R - chr2R_8087545_8087932 chr2R_8087544_8087545;chr2R_8087932_8087933 chr2R_8087476_8087544;chr2R_8087933_8088055 100.00 100.00 100.00 91.67 100.00 100.00 100.00 92.31 100.00 NA NA 100.00 100.00 NA 100.00 100.00 NA 100.00 90.00 100.00 NA 97.83 94.44 100.00 NA 100.00 100.00 95.00 96.67 92.31 100.00 100.00 94.12 100.00 100.00 NA 100.00 100.00 100.00 86.36 93.75 100.00 90.00 100.00 100.00 94.44 100.00 95.65 100.00 100.00 100.00 NA 100.00 100.00 90.00 100.00 100.00 93.55 K intron_retention F_chr3L_6602496_6609177,CG8398 chr3L + chr3L_6606753_6608997 chr3L_6606752_6606753;chr3L_6608997_6608998 chr3L_6606636_6606752;chr3L_6608998_6609696 36.75 40.00 21.88 54.90 22.22 20.00 52.94 40.58 51.55 NA 35.48 30.65 50.00 39.53 39.47 40.79 47.37 35.14 48.72 24.00 33.33 35.53 58.06 42.11 63.64 33.33 53.85 20.00 NA 33.33 29.79 NA NA 41.82 25.00 45.45 28.57 31.25 31.58 14.81 NA 33.33 37.14 54.17 NA 33.33 41.67 14.29 31.43 43.75 38.89 52.63 53.85 35.71 32.43 36.36 46.15 NA K jcn_only_AA Fer1HCH,I_chr3R_26212319_26213496,I_chr3R_26212834_26213185,I_chr3R_26213132_26213185 chr3R - chr3R_26213365_26213496;chr3R_26213325_26213496 chr3R_26213273_26213496 chr3R_26213497_26213534;chr3R_26213186_26213272 42.03 42.03 46.76 57.39 32.93 43.13 28.60 40.35 35.09 47.92 38.72 47.60 23.87 35.52 47.52 39.41 37.80 46.83 42.86 51.16 40.10 41.25 45.03 39.87 31.16 41.92 37.85 41.27 39.93 42.53 45.63 37.59 61.62 45.68 37.14 61.56 45.83 49.44 40.92 38.73 38.35 44.82 40.64 50.83 44.44 35.32 42.91 35.56 50.57 45.19 34.57 43.28 46.96 44.74 41.52 50.17 35.30 48.06 K intron_retention CG4841 chr2L + chr2L_16915821_16915880 chr2L_16915820_16915821;chr2L_16915880_16915881 chr2L_16915690_16915820;chr2L_16915881_16917023 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG8108,I_chr3L_9857808_9858157,EI_chr3L_9859462_9859590 chr3L + chr3L_9857903_9858179 chr3L_9857903_9858157 chr3L_9857732_9857902;chr3L_9858180_9858257 86.62 87.93 82.54 86.36 83.33 87.72 82.26 91.28 80.00 NA 81.25 85.86 98.00 82.67 89.06 91.82 91.89 87.93 79.35 81.48 82.50 86.57 87.34 74.47 96.00 88.30 83.33 68.00 86.67 79.41 83.80 90.91 88.24 91.41 82.54 84.21 83.33 75.00 81.82 91.95 81.82 90.60 84.21 89.36 95.83 79.10 87.23 87.50 90.40 88.24 86.75 79.49 87.76 83.87 87.18 77.27 96.83 88.24 K intron_retention CG4699 chr3R + chr3R_11624127_11624445 chr3R_11624126_11624127;chr3R_11624445_11624446 chr3R_11623809_11624126;chr3R_11624446_11624758 87.91 76.32 85.71 88.89 79.31 96.00 95.65 94.64 89.86 90.48 91.18 86.36 91.18 93.55 86.27 90.00 94.12 95.83 89.19 86.21 90.62 94.78 88.52 82.46 85.29 85.71 86.79 79.66 80.00 87.91 89.74 92.16 89.77 90.91 91.23 74.47 85.48 83.78 90.62 96.75 93.22 84.27 91.18 86.79 82.93 85.94 86.67 86.47 94.94 84.78 90.38 96.43 79.07 83.87 78.26 80.00 86.67 83.00 K jcn_only_AA ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13418952_13419022 chr2R_13418967_13419022 chr2R_13419023_13419122;chr2R_13418852_13418951 99.04 98.91 100.00 98.40 98.28 98.73 99.04 100.00 99.45 97.56 97.10 99.25 100.00 97.10 100.00 98.81 100.00 98.92 98.33 97.87 100.00 99.02 100.00 100.00 98.44 100.00 98.95 90.00 96.67 98.84 97.06 97.73 97.46 100.00 100.00 98.84 99.17 97.18 98.44 99.12 100.00 99.34 100.00 98.55 98.15 100.00 100.00 96.51 100.00 98.28 100.00 100.00 100.00 100.00 97.65 100.00 100.00 100.00 K intron_retention by,RI_chr3R_5373093_5377292 chr3R - chr3R_5354681_5356461 chr3R_5354680_5354681;chr3R_5356461_5356462 chr3R_5354623_5354680;chr3R_5356462_5358734 10.45 8.33 6.67 5.41 0.00 26.32 17.14 16.28 10.45 0.00 13.04 15.56 33.33 16.67 10.00 0.00 5.56 29.41 7.69 21.05 16.67 14.29 13.04 10.00 13.33 22.22 20.83 25.00 20.00 5.88 8.00 NA 0.00 16.22 0.00 25.00 2.86 0.00 3.12 14.29 0.00 11.67 9.52 14.81 4.00 13.79 9.09 3.85 13.16 3.70 11.76 10.00 NA 0.00 27.27 5.00 NA NA K intron_retention CG14482,I_chr2R_13460029_13460240,I_chr2R_13466001_13466072 chr2R - chr2R_13460029_13460156 chr2R_13460028_13460029;chr2R_13460156_13460157 chr2R_13459929_13460028;chr2R_13460157_13460259 0.00 0.00 0.00 0.00 0.00 0.31 0.16 0.00 0.21 0.36 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.32 0.00 0.00 0.47 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor E(z),RI_chr3L_10629194_10629525,RI_chr3L_10629541_10629723 chr3L - chr3L_10629194_10629723 chr3L_10629194_10629525 chr3L_10629096_10629193;chr3L_10629724_10629823 0.00 0.00 2.27 2.22 0.00 0.00 1.82 1.64 1.11 0.00 0.00 1.15 0.00 2.56 0.00 0.00 0.00 0.00 2.56 0.87 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 1.52 0.00 0.00 0.00 0.00 0.00 0.00 2.33 1.09 0.00 0.00 2.70 0.00 0.00 0.00 1.90 0.00 0.00 0.00 0.00 0.00 2.22 0.00 1.12 0.00 K intron_retention CG3632,RI_chrX_16195880_16196242 chrX + chrX_16194365_16194430 chrX_16194364_16194365;chrX_16194430_16194431 chrX_16194259_16194364;chrX_16194431_16194741 3.23 5.88 3.03 0.00 10.00 0.00 7.69 7.14 7.69 NA 0.00 3.85 7.69 3.23 0.00 1.96 0.00 2.38 2.33 3.06 9.68 6.90 5.26 0.00 3.45 5.13 2.86 NA 8.70 0.00 8.33 0.00 10.53 1.56 13.04 3.33 0.00 3.57 0.00 4.00 6.67 4.48 7.41 2.56 12.50 9.09 0.00 0.00 7.35 0.00 6.12 0.00 0.00 0.00 0.00 0.00 0.00 6.06 K intron_retention CG30193,CG30190 chr2R + chr2R_18813136_18814621 chr2R_18813135_18813136;chr2R_18814621_18814622 chr2R_18813123_18813135;chr2R_18814622_18814694 6.25 5.13 2.04 0.00 8.33 0.00 6.90 8.47 8.64 NA 9.09 6.06 9.30 4.65 7.32 6.00 6.67 8.51 6.52 6.25 11.76 16.67 5.63 4.17 2.04 7.55 6.25 NA 0.00 13.04 3.57 0.00 6.25 6.67 0.00 10.53 9.09 9.09 11.48 6.56 6.25 8.43 6.45 0.00 8.70 0.00 5.26 5.13 8.06 5.41 3.85 7.41 5.71 0.00 5.66 5.26 6.67 6.90 K intron_retention CG8908,I_chr2R_16158045_16158109 chr2R + chr2R_16157528_16158109 chr2R_16157527_16157528;chr2R_16158109_16158110 chr2R_16156652_16157527;chr2R_16158110_16158209 0.00 NA 13.33 NA NA NA 2.70 NA 10.53 NA NA NA 0.00 NA 14.29 6.90 NA 0.00 25.00 0.00 NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA 0.00 6.25 NA NA NA NA 0.00 4.35 NA 13.33 NA NA 0.00 0.00 NA 0.00 0.00 0.00 14.29 NA NA NA NA NA NA NA K cassette CG31638,I_chr2L_6494875_6494937 chr2L + chr2L_6495105_6496056 chr2L_6495105_6495243;chr2L_6495869_6496056 chr2L_6495244_6495868 chr2L_6494938_6495104;chr2L_6496057_6496971 50.00 50.00 54.05 41.94 53.33 52.94 42.11 28.30 45.71 28.57 50.00 34.78 25.93 52.94 41.67 75.00 44.00 58.62 38.89 35.71 50.00 64.15 48.10 54.39 37.21 29.41 45.31 57.14 81.58 58.70 37.14 61.76 44.32 45.10 37.50 35.00 56.92 66.67 50.75 53.85 34.55 52.17 53.85 46.81 41.86 39.62 53.19 50.00 55.36 64.10 57.63 54.84 63.16 38.00 42.11 44.00 50.98 56.14 K intron_retention tna chr3L + chr3L_10865859_10865933 chr3L_10865858_10865859;chr3L_10865933_10865934 chr3L_10865645_10865858;chr3L_10865934_10866676 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CkIIbeta,I_chrX_11686847_11687475,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11686701_11687475 chrX_11686720_11687475 chrX_11687476_11687551;chrX_11686609_11686700 98.85 100.00 100.00 97.75 97.62 100.00 100.00 98.75 97.10 100.00 100.00 100.00 100.00 93.18 91.67 98.77 97.37 100.00 98.25 98.94 97.06 100.00 96.83 98.15 96.08 95.08 95.35 96.43 100.00 100.00 97.56 NA 100.00 97.59 NA 100.00 100.00 97.30 100.00 97.92 100.00 97.78 100.00 100.00 NA 97.22 97.56 NA 100.00 NA 100.00 96.00 100.00 100.00 97.73 100.00 100.00 96.00 K alternative_acceptor CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2815768_2816013;chr2R_2815657_2816013 chr2R_2815654_2816013 chr2R_2816014_2816113;chr2R_2815599_2815653 11.11 16.67 NA 10.00 NA NA 0.00 NA 14.29 NA NA 11.11 NA NA NA NA NA NA NA 22.22 NA 0.00 7.14 12.50 NA NA 0.00 NA 16.67 8.33 NA NA 14.29 14.29 NA 7.14 22.22 0.00 0.00 6.67 33.33 10.00 NA NA 22.22 16.67 28.57 11.11 0.00 9.09 0.00 NA NA NA NA 16.67 NA NA K intron_retention CG12547 chr2R - chr2R_675851_675904 chr2R_675850_675851;chr2R_675904_675905 chr2R_674643_675850;chr2R_675905_676039 0.00 NA NA NA NA NA 0.00 8.33 0.00 NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA E(bx),I_chr3L_246324_246699 chr3L - chr3L_241499_241563 chr3L_241502_241563 chr3L_241564_245475;chr3L_241118_241498 98.18 96.36 96.30 96.45 100.00 95.52 99.37 97.75 96.89 100.00 98.39 96.55 98.94 98.70 94.38 98.09 100.00 97.94 95.61 98.17 96.49 98.61 96.55 96.67 100.00 96.67 98.70 100.00 100.00 98.15 95.35 100.00 98.82 97.89 95.00 93.65 100.00 100.00 96.55 98.17 100.00 99.33 98.82 100.00 95.00 98.18 100.00 94.44 98.20 100.00 98.68 98.21 100.00 100.00 96.40 97.14 100.00 96.49 K alternative_donor cbs,I_chr2R_9340506_9340593,I_chr2R_9340512_9340593 chr2R + chr2R_9340536_9340593;chr2R_9340506_9340593 chr2R_9340512_9340593 chr2R_9340594_9340693;chr2R_9340412_9340505 4.44 0.00 7.69 4.76 0.00 0.00 2.22 2.86 5.56 16.67 0.00 4.88 9.09 8.33 7.69 0.00 11.76 4.00 3.70 3.77 0.00 16.67 0.00 3.23 0.00 0.00 6.25 0.00 0.00 4.35 6.98 7.69 0.00 4.44 9.52 0.00 4.76 5.00 6.67 6.25 9.09 6.67 0.00 10.00 0.00 4.65 8.70 0.00 0.00 2.56 8.11 4.76 0.00 7.41 0.00 4.55 4.76 0.00 K intron_retention Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5006333_5006404 chr2R_5006332_5006333;chr2R_5006404_5006405 chr2R_5006244_5006332;chr2R_5006405_5006492 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.66 0.00 0.00 0.00 2.44 6.02 0.00 0.00 0.00 0.83 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Mms19 chr3R + chr3R_1058449_1058512 chr3R_1058448_1058449;chr3R_1058512_1058513 chr3R_1058273_1058448;chr3R_1058513_1058896 0.00 0.00 NA 0.00 0.00 NA 7.69 0.00 0.00 NA 0.00 3.23 NA 7.69 0.00 0.00 NA 0.00 NA 2.70 0.00 26.32 2.50 6.90 NA NA 0.00 20.00 0.00 0.00 NA NA 0.00 5.71 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 NA 0.00 NA 0.00 0.00 0.00 12.50 0.00 0.00 K intron_retention gpp,I_chr3R_2271795_2272181 chr3R + chr3R_2232814_2233199 chr3R_2232813_2232814;chr3R_2233199_2233200 chr3R_2232804_2232813;chr3R_2233200_2233496 30.00 29.41 47.06 34.04 29.41 31.58 34.38 25.00 25.00 14.29 12.50 28.12 14.29 13.79 38.46 31.25 20.00 33.33 30.00 41.38 NA 41.67 24.24 NA 35.71 42.86 28.57 41.67 56.25 20.83 36.84 NA 34.48 32.61 33.33 41.67 29.41 NA NA 16.13 NA 20.93 19.05 22.22 NA 25.00 NA 34.21 16.67 54.55 35.71 17.65 NA NA 28.00 NA NA 30.00 K intron_retention CG10641 chr2L - chr2L_18978770_18986671 chr2L_18978769_18978770;chr2L_18986671_18986672 chr2L_18977521_18978769;chr2L_18986672_18987147 0.00 0.00 0.00 0.47 0.00 0.29 0.00 0.97 0.00 0.00 0.42 0.43 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.28 0.00 1.33 0.46 0.31 1.73 0.00 0.67 3.61 3.52 0.00 0.00 0.00 0.00 0.00 0.49 0.42 0.29 0.75 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.53 0.60 0.00 0.00 0.00 0.89 0.00 0.00 K jcn_only_AD Gs1l,I_chr2L_4456517_4456723,I_chr2L_4458058_4458120 chr2L - chr2L_4456521_4456725;chr2L_4456521_4456719 chr2L_4456521_4456723 chr2L_4456386_4456520;chr2L_4456726_4456801 60.79 NA NA 62.07 72.00 70.00 75.51 78.57 63.86 NA 62.86 73.81 62.50 60.00 63.89 60.71 70.37 60.87 58.97 54.05 72.73 NA NA 42.86 NA 63.64 NA NA NA NA 78.00 NA 40.54 57.41 NA NA 38.10 NA 34.78 25.00 28.57 70.69 63.64 38.46 55.17 45.00 NA 37.50 69.44 NA NA 50.00 NA NA 70.97 44.00 37.50 41.94 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2389073;chrX_2389272_2395659 chrX_2387584_2387709;chrX_2388437_2388670;chrX_2389074_2389271 chrX_2387149_2387248;chrX_2395660_2395759 1.61 1.92 1.47 0.00 2.17 0.00 0.00 1.48 1.74 3.85 0.00 4.30 0.00 1.72 1.11 1.54 1.54 2.86 2.41 1.96 0.00 2.27 1.12 0.00 2.94 1.69 1.45 0.00 2.70 1.67 1.79 0.00 1.01 1.52 0.00 3.23 1.12 2.63 1.25 2.91 0.00 2.16 1.61 4.05 7.14 0.00 NA 2.29 1.68 0.00 2.04 0.00 2.08 NA 2.02 0.00 0.00 2.04 K intron_retention Fis1,I_chr2R_1491917_1492087,I_chr2R_1492154_1492214 chr2R - chr2R_1491267_1491404 chr2R_1491266_1491267;chr2R_1491404_1491405 chr2R_1491125_1491266;chr2R_1491405_1491517 32.73 44.00 42.37 43.42 44.00 46.34 63.21 32.41 39.16 23.08 42.86 32.73 28.40 42.86 38.46 40.00 37.70 29.17 33.71 31.90 37.14 18.75 28.57 27.66 36.11 61.36 36.36 21.43 32.35 16.67 34.29 16.67 23.73 34.81 22.22 33.33 34.78 21.74 26.32 29.41 23.68 38.76 38.10 23.08 31.17 20.30 26.67 20.55 33.14 27.12 34.29 35.90 30.00 13.64 35.71 30.36 43.55 20.50 K intron_retention JTBR chr3L - chr3L_1802744_1802803 chr3L_1802743_1802744;chr3L_1802803_1802804 chr3L_1802008_1802743;chr3L_1802804_1802835 52.59 52.38 39.02 52.27 35.48 50.00 43.64 40.00 48.65 75.00 44.00 63.16 42.86 47.83 53.57 56.52 23.53 57.69 45.71 52.38 53.85 52.17 100.00 92.86 76.92 68.18 88.46 78.95 83.33 52.63 52.63 53.85 52.00 50.00 63.64 100.00 90.70 95.24 90.00 36.67 63.16 52.54 50.00 45.16 35.56 44.44 90.91 47.06 47.54 75.00 64.71 78.57 50.00 NA 40.91 93.33 80.95 28.57 K alternative_last_exon Sox102F,noncoding_20788 chr4 - chr4_823954_827811 chr4_827583_827811 chr4_823024_823953 chr4_827308_827582 chr4_827812_827863 0.00 0.00 0.00 NA 0.00 0.00 33.33 NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 33.33 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 33.33 NA NA 0.00 NA 20.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA K jcn_only_AA RI_chr2L_8218680_8218853,Pvr,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8221968_8222225 chr2L_8222115_8222225 chr2L_8222226_8222376;chr2L_8221488_8221967 90.71 73.77 90.24 92.13 92.08 95.29 95.35 97.10 90.52 87.00 90.71 92.25 93.94 93.30 92.68 91.48 90.06 93.01 94.92 89.96 90.95 86.96 78.98 85.71 86.40 92.77 83.52 85.45 92.55 86.18 89.40 92.52 91.08 96.32 93.80 94.92 83.42 35.09 90.43 92.87 92.03 92.00 92.31 84.62 89.09 91.08 88.92 94.78 88.47 83.71 89.01 85.55 88.67 86.25 94.25 75.78 83.92 91.12 K intron_retention Gp150,I_chr2R_18205316_18205386,I_chr2R_18213233_18213308 chr2R + chr2R_18205316_18205386 chr2R_18205315_18205316;chr2R_18205386_18205387 chr2R_18205216_18205315;chr2R_18205387_18205459 91.93 91.67 83.78 87.88 88.89 96.67 95.59 88.52 90.57 NA 95.00 89.47 92.31 94.12 68.89 97.44 90.32 90.91 97.56 93.22 95.45 88.89 93.33 93.55 98.00 98.95 97.06 94.74 97.30 69.23 90.48 NA 69.23 90.16 95.65 95.12 86.67 95.00 96.30 84.62 95.83 89.83 92.31 82.61 NA 92.86 91.67 100.00 92.19 100.00 92.50 88.89 84.62 80.00 88.37 90.00 75.00 90.91 K alternative_acceptor CG3919 chr3L + chr3L_14404002_14404219 chr3L_14404002_14404180 chr3L_14403414_14404001;chr3L_14404220_14404372 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG14463 chr3R + chr3R_3826386_3826445 chr3R_3826385_3826386;chr3R_3826445_3826446 chr3R_3826339_3826385;chr3R_3826446_3826512 41.94 56.00 40.00 41.82 39.29 31.03 42.31 51.67 42.03 38.46 47.06 41.10 54.05 46.88 37.78 46.03 34.48 50.00 44.44 38.46 42.86 33.33 42.11 34.88 60.00 52.00 41.67 29.41 41.18 38.89 36.17 51.72 29.41 46.27 60.00 50.00 53.85 44.00 53.85 35.29 55.56 42.86 53.85 45.83 40.00 45.83 36.36 34.62 37.70 41.94 48.15 39.29 22.73 37.84 38.46 48.72 32.65 38.71 K alternative_acceptor l(2)tid chr2R + chr2R_19595998_19596157 chr2R_19595998_19596152 chr2R_19594625_19595997;chr2R_19596158_19596758 69.23 56.25 87.50 NA NA 77.78 NA 75.00 92.31 66.67 NA 62.50 NA NA NA 75.00 NA 80.00 70.00 73.33 NA 70.00 73.68 55.00 36.36 NA 46.15 54.55 84.62 75.00 NA 75.00 69.57 60.00 41.67 NA 82.61 76.92 61.11 54.55 66.67 61.90 NA 66.67 68.97 60.00 63.16 66.67 78.57 66.67 69.23 75.00 71.43 64.29 NA 69.23 74.07 77.78 K intron_retention Coq2 chr3R - chr3R_4142136_4142194 chr3R_4142135_4142136;chr3R_4142194_4142195 chr3R_4141144_4142135;chr3R_4142195_4142371 32.05 NA NA NA NA NA NA NA 16.67 NA NA 25.00 NA NA NA 56.25 NA NA NA 30.77 NA NA 33.33 NA NA NA NA NA NA NA 50.00 NA NA 50.00 NA NA NA NA NA NA NA 37.50 NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA 6.67 NA K intron_retention Hsc70-4,EI_chr3R_11068693_11068772 chr3R + chr3R_11068522_11068631 chr3R_11068521_11068522;chr3R_11068631_11068632 chr3R_11068453_11068521;chr3R_11068632_11068692 7.80 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 15.00 NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA 11.76 NA 3.85 NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG1074,I_chr3R_261173_261244,RI_chr3R_265878_265942 chr3R + chr3R_259882_260376 chr3R_259909_260376 chr3R_260377_261172;chr3R_259736_259881 100.00 100.00 NA 100.00 NA NA 100.00 96.43 100.00 NA NA 100.00 NA 95.00 100.00 97.56 NA NA NA 98.25 NA 100.00 NA 100.00 NA NA 100.00 NA 100.00 100.00 96.55 97.62 97.06 100.00 NA 100.00 NA NA 100.00 98.00 100.00 97.56 NA 100.00 100.00 100.00 95.45 100.00 98.00 NA 96.30 NA 100.00 100.00 96.30 NA NA 98.57 K alternative_acceptor CG9135,I_chr2L_6050922_6051505 chr2L + chr2L_6050922_6051627 chr2L_6050922_6051616 chr2L_6050822_6050921;chr2L_6051628_6052022 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 95.65 87.50 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 100.00 NA 100.00 NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention CG14935 chr2L + chr2L_11851552_11851617 chr2L_11851551_11851552;chr2L_11851617_11851618 chr2L_11850390_11851551;chr2L_11851618_11851768 0.00 NA NA NA 7.69 NA NA NA 0.00 NA NA 4.76 NA NA NA NA NA NA NA 8.00 NA 0.00 14.29 0.00 NA NA 0.00 NA NA NA 18.75 NA NA NA 0.00 NA 4.35 0.00 0.00 0.00 NA 8.33 NA NA 6.67 0.00 0.00 0.00 4.55 6.67 4.76 NA 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention Rme-8 chr2R - chr2R_5063437_5063595 chr2R_5063436_5063437;chr2R_5063595_5063596 chr2R_5063238_5063436;chr2R_5063596_5063740 0.00 0.00 NA 2.63 NA 0.00 6.45 4.44 0.00 NA 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 0.00 0.00 13.33 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 14.29 0.00 NA 0.00 6.25 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 4.76 7.14 NA NA 7.41 NA NA NA K cassette TepII,I_chr2L_7696207_7698724,I_chr2L_7697158_7697976 chr2L - chr2L_7696207_7698724 chr2L_7696207_7698373;chr2L_7698552_7698724 chr2L_7698374_7698551 chr2L_7696107_7696206;chr2L_7698725_7698824 77.59 78.57 100.00 80.00 87.50 87.50 88.89 70.59 75.86 100.00 NA 80.00 88.89 71.43 76.92 88.89 66.67 83.33 83.33 85.00 83.33 30.77 76.47 70.59 54.55 100.00 85.71 20.00 NA 54.55 71.43 66.67 41.67 90.91 60.00 62.50 76.92 85.71 81.82 75.00 83.33 78.26 55.56 80.77 71.43 76.47 73.33 69.23 94.44 NA 63.16 61.54 100.00 87.50 84.62 88.89 75.00 76.47 K intron_retention slv chr2R - chr2R_3968465_3968535 chr2R_3968464_3968465;chr2R_3968535_3968536 chr2R_3968243_3968464;chr2R_3968536_3968711 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 8.33 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.08 1.82 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9205,RI_chr3L_1035462_1035545 chr3L + chr3L_1035462_1035559 chr3L_1035461_1035462;chr3L_1035559_1035560 chr3L_1035393_1035461;chr3L_1035560_1035628 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG5594,CG2812 chr2R + chr2R_19796155_19797200 chr2R_19796169_19797200 chr2R_19797201_19797332;chr2R_19796020_19796154 3.17 0.85 2.80 3.55 2.53 2.17 3.51 6.80 2.63 2.27 3.28 3.45 2.13 2.80 2.56 2.54 3.61 3.12 4.00 3.94 4.55 6.06 2.13 2.83 5.06 2.44 2.04 0.00 3.57 0.73 2.88 4.23 3.45 3.37 3.49 2.50 2.27 0.00 1.94 4.85 5.36 3.17 1.33 1.50 3.37 5.45 2.44 3.26 3.39 5.88 1.43 2.53 5.36 4.17 4.00 3.75 6.45 1.56 K intron_retention Mov34,E_chr2R_20290987_20291441 chr2R + chr2R_20290888_20290954 chr2R_20290887_20290888;chr2R_20290954_20290955 chr2R_20290887_20290887;chr2R_20290955_20290981 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 1.06 0.54 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG17683,I_chr2R_18774_18869 chr2R + chr2R_18748_18826 chr2R_18774_18826 chr2R_18827_18997;chr2R_18711_18747 69.23 70.00 NA 52.00 NA NA 56.25 65.22 66.67 NA NA 65.00 69.23 72.73 77.78 53.85 NA NA 75.00 66.67 NA NA 88.89 NA NA 60.00 90.91 NA NA NA 69.23 NA NA 61.90 60.00 NA NA NA NA 88.89 NA 70.59 81.82 75.00 NA 66.67 80.00 NA 59.09 55.56 NA NA NA NA 75.00 87.50 45.45 81.82 K alternative_donor CG14478 chr2R + chr2R_13345960_13349498;chr2R_13345952_13349498 chr2R_13345529_13349498 chr2R_13349499_13349990;chr2R_13345525_13345528 0.00 NA 0.00 NA 0.00 NA NA 14.29 10.00 NA 0.00 0.00 25.00 NA NA NA NA NA NA 0.00 NA NA 25.00 0.00 33.33 25.00 0.00 NA NA NA 25.00 NA NA 0.00 0.00 NA 0.00 NA NA 20.00 NA 12.50 0.00 0.00 NA 0.00 NA NA 0.00 NA 33.33 NA NA NA NA NA 0.00 NA K intron_retention porin,I_chr2L_10848864_10848942,RI_chr2L_10848864_10848966,I_chr2L_10848864_10849515 chr2L - chr2L_10848864_10850753 chr2L_10848863_10848864;chr2L_10850753_10850754 chr2L_10848764_10848863;chr2L_10850754_10850861 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.37 0.47 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 1.09 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention pcm chrX - chrX_19384549_19384617 chrX_19384548_19384549;chrX_19384617_19384618 chrX_19384240_19384548;chrX_19384618_19385712 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA 2.94 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention I_chr2L_8000434_8000497,Spn28D chr2L - chr2L_8005561_8006431 chr2L_8005560_8005561;chr2L_8006431_8006432 chr2L_8004536_8005560;chr2L_8006432_8007189 0.00 0.00 0.00 2.86 0.00 9.52 8.70 0.00 3.23 0.00 0.00 2.38 6.25 0.00 0.00 NA 0.00 NA 0.00 5.88 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 3.85 0.00 10.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 5.26 0.00 5.17 0.00 10.71 0.00 0.00 0.00 0.00 5.41 20.00 0.00 0.00 0.00 K jcn_only_AA ena chr2R + chr2R_15048921_15048980 chr2R_15048921_15048977 chr2R_15048699_15048920;chr2R_15048981_15049098 25.28 20.51 22.80 27.69 25.40 22.06 19.87 20.23 20.67 27.49 23.91 25.68 21.93 26.02 24.14 25.79 25.12 20.49 24.62 22.07 20.43 22.40 26.54 27.55 28.46 24.20 29.33 32.81 24.23 27.30 25.28 27.07 27.61 20.95 27.86 26.30 23.18 25.23 26.21 26.44 25.51 20.78 22.08 28.57 28.03 27.86 22.45 35.78 26.06 27.51 26.70 29.38 26.29 22.53 20.69 23.89 21.05 24.75 K cassette cals,I_chr4_1139644_1142084,RI_chr4_1141233_1142084 chr4 - chr4_1141428_1143848 chr4_1141428_1142084;chr4_1142249_1143848 chr4_1142085_1142248 chr4_1141285_1141427;chr4_1143849_1143862 100.00 100.00 100.00 100.00 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 K jcn_only_AA CG4841 chr2L + chr2L_16915622_16915689 chr2L_16915622_16915671 chr2L_16915421_16915621;chr2L_16915690_16915817 0.00 2.56 0.00 1.47 0.00 0.00 0.00 0.00 0.90 3.12 2.08 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.88 0.00 0.00 3.70 2.04 2.70 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 1.75 0.00 0.00 1.37 NA 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.94 2.86 0.00 0.00 0.00 0.00 2.25 1.54 0.00 0.00 K cassette capt,I_chr2L_1156009_1158078,I_chr2L_1153732_1154551,I_chr2L_1153732_1157370,I_chr2L_1163632_1163759 chr2L - chr2L_1153732_1155745 chr2L_1153732_1154551;chr2L_1155054_1155745 chr2L_1154552_1155053 chr2L_1153632_1153731;chr2L_1155746_1155788 42.27 NA NA 42.86 NA NA NA NA 100.00 NA NA 33.33 NA NA NA NA NA NA NA 57.14 NA 34.62 41.67 50.00 80.00 NA 55.56 83.33 54.55 30.00 NA NA 38.46 28.57 NA 36.36 80.00 NA 71.43 30.77 NA 57.14 NA 42.86 20.00 22.22 NA 20.00 NA NA 30.00 NA NA NA NA NA NA NA K alternative_donor rin,I_chr3R_9476825_9476895 chr3R + chr3R_9472992_9473104;chr3R_9473004_9473104 chr3R_9472923_9473104 chr3R_9473105_9473268;chr3R_9472709_9472922 100.00 100.00 100.00 100.00 97.87 98.46 98.78 99.56 99.25 100.00 100.00 99.51 100.00 100.00 100.00 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 98.82 100.00 99.54 100.00 95.65 100.00 NA 100.00 100.00 99.47 100.00 100.00 97.30 100.00 NA 99.33 100.00 100.00 100.00 K intron_retention l(3)mbn chr3L - chr3L_6118755_6118925 chr3L_6118754_6118755;chr3L_6118925_6118926 chr3L_6118486_6118754;chr3L_6118926_6119093 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA lig,CI_chr2R_3962006_3962916,I_chr2R_3962357_3962977,RI_chr2R_3962875_3962977 chr2R + chr2R_3961910_3962980 chr2R_3961910_3962977 chr2R_3961906_3961909;chr2R_3962981_3963016 98.00 NA NA NA NA NA NA NA 96.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.48 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD cnn,I_chr2R_9333096_9336723,I_chr2R_9333096_9336812,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9334834_9336723;chr2R_9334834_9336812;chr2R_9334834_9336719 chr2R_9334834_9336501 chr2R_9334744_9334833;chr2R_9336813_9336819 59.73 NA NA 64.52 NA NA 61.54 59.46 75.93 NA NA 48.28 52.17 NA NA 74.29 NA NA NA 43.59 NA 50.00 66.67 NA NA NA 58.62 65.38 NA 60.71 NA NA 55.17 NA NA 37.04 65.38 NA NA 57.69 NA 50.00 NA 68.89 NA 43.48 NA 60.00 69.70 52.38 92.31 NA NA NA NA NA NA NA K intron_retention Ptp99A,I_chr3R_25302126_25302175 chr3R + chr3R_25288298_25297372 chr3R_25288297_25288298;chr3R_25297372_25297373 chr3R_25288248_25288297;chr3R_25297373_25297414 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA 4.35 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA K alternative_acceptor CG3563,I_chr3R_10615218_10615284,F_chr3R_10620137_10620250 chr3R + chr3R_10614342_10614420 chr3R_10614342_10614417 chr3R_10613779_10614341;chr3R_10614421_10614688 46.15 50.00 53.33 50.00 46.15 46.15 46.15 26.32 46.15 46.15 66.67 50.00 NA 50.00 43.75 66.67 NA 35.71 55.56 52.63 42.86 45.95 46.67 43.33 39.13 36.36 40.00 39.53 41.18 45.45 53.33 NA 53.85 54.17 56.52 45.45 38.46 47.83 37.14 39.29 NA 53.33 36.36 40.00 NA 35.71 53.85 29.41 44.00 54.55 50.00 60.00 41.67 NA 52.00 NA 50.00 NA K intron_retention capt,I_chr2L_1156009_1158078,I_chr2L_1153732_1154551,I_chr2L_1153732_1157370,I_chr2L_1163632_1163759 chr2L - chr2L_1153732_1158078 chr2L_1153731_1153732;chr2L_1158078_1158079 chr2L_1153632_1153731;chr2L_1158079_1158178 1.66 1.80 1.55 2.29 3.42 1.11 3.20 1.67 2.59 1.22 0.73 1.62 1.31 2.76 2.99 5.12 3.25 2.63 1.23 1.62 2.41 0.73 1.84 1.44 1.01 1.28 2.48 3.16 3.87 1.51 2.40 1.76 0.00 3.54 1.48 1.65 2.11 1.63 0.78 0.73 1.20 1.16 1.91 1.60 2.45 1.66 1.69 1.01 1.89 3.48 1.46 1.46 2.04 1.09 1.90 1.58 2.51 0.56 K cassette pho,RI_chr4_1193657_1194431,I_chr4_1193830_1194784,EI_chr4_1193830_1195360,RI_chr4_1193830_1195384,I_chr4_1193830_1201673 chr4 - chr4_1193657_1194431 chr4_1193657_1193709;chr4_1193830_1194431 chr4_1193710_1193829 chr4_1193557_1193656;chr4_1194432_1194531 100.00 100.00 97.22 100.00 95.65 100.00 100.00 98.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.68 97.30 100.00 100.00 100.00 100.00 92.86 97.44 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 96.67 100.00 100.00 97.50 100.00 97.22 100.00 100.00 98.88 96.97 100.00 100.00 95.24 100.00 100.00 100.00 100.00 98.44 K intron_retention CG7971,I_chr3L_1659363_1659845,I_chr3L_1667736_1667806 chr3L - chr3L_1655710_1656678 chr3L_1655709_1655710;chr3L_1656678_1656679 chr3L_1655525_1655709;chr3L_1656679_1656811 21.85 12.77 15.69 37.63 17.14 7.55 23.08 14.29 18.48 36.11 5.41 19.54 17.86 17.50 13.79 26.79 11.43 27.50 20.00 19.82 4.88 41.46 26.67 18.84 23.53 25.00 42.42 46.34 43.33 33.33 9.30 56.52 20.77 19.74 22.22 17.74 21.33 24.39 22.22 37.86 31.75 16.67 NA 54.55 22.16 32.89 16.18 45.83 15.79 26.19 22.03 15.15 21.67 20.00 15.52 25.00 23.53 28.83 K jcn_only_AA CG1910,I_chr3R_27573809_27574675,I_chr3R_27574408_27574675,I_chr3R_27574557_27574675 chr3R + chr3R_27573809_27574928 chr3R_27573809_27574675 chr3R_27573709_27573808;chr3R_27574929_27575243 0.25 0.00 1.25 0.70 1.04 0.00 0.00 0.67 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 1.05 0.67 0.86 1.24 0.49 0.00 1.09 0.00 0.00 0.66 0.00 0.29 1.00 0.00 0.25 1.13 0.00 0.40 0.56 0.69 0.57 0.86 0.36 0.37 0.00 0.00 0.00 0.32 0.00 0.10 0.68 0.84 0.00 0.00 0.49 0.00 0.00 0.89 0.00 0.00 K intron_retention CG4630,RI_chr2R_9103472_9103634,I_chr2R_9103765_9103852,I_chr2R_9103910_9104108,I_chr2R_9103956_9104108,RI_chr2R_9104206_9104265 chr2R - chr2R_9104203_9104265 chr2R_9104202_9104203;chr2R_9104265_9104266 chr2R_9104109_9104202;chr2R_9104266_9104365 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 16.67 0.00 0.00 12.50 NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 2.56 NA 0.00 NA NA 0.00 NA 6.25 0.00 8.33 7.14 NA NA 8.70 NA NA NA 0.00 NA NA 0.00 NA K mutually_exclusive CG42595,I_chr2RHet_3155517_3174709,RI_chr2RHet_3175044_3179353,RI_chr2RHet_3179300_3179586,I_chr2RHet_3179481_3179586 chr2RHet - chr2RHet_3175044_3179353,chr2RHet_3179481_3179586 chr2RHet_3175044_3179091,chr2RHet_3179300_3179586 chr2RHet_3179354_3179480 chr2RHet_3179092_3179299 chr2RHet_3174944_3175043;chr2RHet_3179587_3179598 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 80.00 NA NA 100.00 100.00 NA 100.00 75.00 NA NA NA 100.00 NA 80.00 NA NA NA NA NA 100.00 100.00 NA NA 80.00 NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 K alternative_acceptor CG40439,I_chr2L_22690863_22690905 chr2L - chr2L_22690855_22690905;chr2L_22690863_22690905 chr2L_22690836_22690905 chr2L_22690906_22691005;chr2L_22690763_22690835 94.57 97.37 92.00 93.55 100.00 97.30 94.97 96.61 95.21 92.31 96.55 95.79 91.23 94.74 91.67 92.74 97.83 96.88 92.73 92.68 96.67 89.47 96.77 97.44 92.59 95.24 93.33 94.74 82.35 100.00 97.73 92.59 NA 94.57 92.86 88.89 88.24 NA NA 91.18 94.44 93.98 95.56 94.74 92.86 95.24 95.45 100.00 91.92 90.48 90.91 92.68 93.33 NA 95.45 92.31 96.83 95.16 K intron_retention CG42595,I_chr2RHet_3155517_3174709,RI_chr2RHet_3175044_3179353,RI_chr2RHet_3179300_3179586,I_chr2RHet_3179481_3179586 chr2RHet - chr2RHet_3179297_3179353 chr2RHet_3179296_3179297;chr2RHet_3179353_3179354 chr2RHet_3179200_3179296;chr2RHet_3179354_3179453 61.48 75.00 NA 50.00 NA NA 54.84 54.55 64.10 NA NA 62.96 46.15 66.67 NA 67.44 NA NA 63.64 52.63 NA NA 66.67 NA NA NA 76.92 NA NA NA 69.23 NA NA 41.67 NA NA NA NA NA 50.00 NA 52.17 60.00 63.64 NA NA NA NA 63.16 NA 54.55 NA NA NA 60.00 NA NA NA K intron_retention CLIP-190,I_chr2L_17394493_17404060,I_chr2L_17401291_17404060,F_chr2L_17401582_17401681,I_chr2L_17401582_17402303 chr2L + chr2L_17401582_17402374 chr2L_17401581_17401582;chr2L_17402374_17402375 chr2L_17401519_17401581;chr2L_17402375_17402403 10.42 8.00 0.00 27.78 0.00 9.68 50.00 13.51 10.42 12.50 13.64 10.42 33.33 11.54 7.41 6.06 15.38 9.09 13.04 12.24 0.00 7.69 10.91 10.00 9.52 30.00 3.12 23.08 19.05 29.17 0.00 0.00 15.38 17.14 10.53 4.76 7.84 6.45 9.09 15.52 30.77 8.16 3.85 10.71 14.29 4.35 9.52 13.04 13.21 15.38 9.80 12.50 0.00 15.00 13.51 8.00 0.00 6.90 K intron_retention CG2915,Sep5 chr2R - chr2R_3847342_3847480 chr2R_3847341_3847342;chr2R_3847480_3847481 chr2R_3846847_3847341;chr2R_3847481_3847513 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 NA 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 100.00 95.65 100.00 NA 100.00 100.00 100.00 100.00 94.44 100.00 100.00 NA NA 100.00 90.91 100.00 NA K intron_retention CG7203,Rack1,RI_chr2L_7826337_7826533 chr2L - chr2L_7826982_7827060 chr2L_7826981_7826982;chr2L_7827060_7827061 chr2L_7826913_7826981;chr2L_7827061_7827129 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.18 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.04 K intron_retention Ca-P60A,I_chr2R_19820338_19823289 chr2R - chr2R_19820115_19820189 chr2R_19820114_19820115;chr2R_19820189_19820190 chr2R_19820097_19820114;chr2R_19820190_19820337 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG1599,RI_chr2R_5728855_5728907,I_chr2R_5728977_5729044,I_chr2R_5729744_5729805 chr2R - chr2R_5728977_5729044 chr2R_5728981_5729044 chr2R_5729045_5729112;chr2R_5728914_5728976 98.77 98.21 97.78 100.00 100.00 100.00 100.00 98.63 98.92 96.30 100.00 100.00 97.73 100.00 98.44 100.00 97.06 98.04 100.00 99.10 97.78 100.00 98.46 98.15 97.22 100.00 98.36 96.43 100.00 97.22 97.18 100.00 97.44 98.61 100.00 100.00 97.87 95.12 100.00 98.77 98.28 98.92 94.59 100.00 100.00 97.44 98.59 98.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 100.00 98.33 98.11 K intron_retention CG4911,I_chr3L_9063745_9063804 chr3L - chr3L_9062555_9063619 chr3L_9062554_9062555;chr3L_9063619_9063620 chr3L_9060303_9062554;chr3L_9063620_9063747 100.00 93.75 96.30 100.00 100.00 100.00 100.00 100.00 98.36 100.00 100.00 97.67 100.00 96.00 100.00 100.00 100.00 100.00 95.83 98.55 100.00 100.00 96.77 100.00 100.00 100.00 96.15 100.00 94.44 100.00 100.00 93.33 100.00 97.67 100.00 91.67 94.44 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 K intron_retention WASp,I_chr3R_24656400_24657416 chr3R - chr3R_24652897_24656223 chr3R_24652896_24652897;chr3R_24656223_24656224 chr3R_24652669_24652896;chr3R_24656224_24656399 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 K intron_retention Myd88 chr2R - chr2R_5191841_5192478 chr2R_5191840_5191841;chr2R_5192478_5192479 chr2R_5191090_5191840;chr2R_5192479_5192665 0.00 0.00 4.35 5.56 0.00 0.00 6.82 0.00 2.94 0.00 0.00 0.00 0.00 2.38 4.17 0.00 6.52 0.00 0.00 1.89 5.00 0.00 1.87 2.61 1.85 0.00 0.00 0.00 0.00 0.00 4.88 0.00 0.00 2.08 0.00 0.00 0.00 1.10 0.00 1.89 0.00 0.00 0.00 3.30 0.00 2.05 0.00 0.00 0.00 0.00 2.83 0.00 0.00 1.94 0.00 0.00 0.83 0.00 K intron_retention CG17883,I_chr2R_560547_560618 chr2R + chr2R_560729_560781 chr2R_560728_560729;chr2R_560781_560782 chr2R_560619_560728;chr2R_560782_561111 0.00 NA 5.56 NA NA NA 4.26 2.70 0.00 NA NA 0.00 0.00 0.00 NA 5.88 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 5.26 NA NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 7.14 NA NA NA 0.00 NA 0.00 0.00 K intron_retention CG4165,I_chrX_5317784_5317881,I_chrX_5321743_5321838 chrX + chrX_5316300_5316612 chrX_5316299_5316300;chrX_5316612_5316613 chrX_5316231_5316299;chrX_5316613_5317050 43.91 NA NA 50.00 NA NA NA NA 54.55 NA NA NA NA NA NA NA NA NA NA 46.15 NA 26.67 NA NA NA NA NA NA NA 41.67 NA NA 31.58 NA NA 66.67 NA NA 30.77 NA NA NA NA NA NA NA NA 58.82 NA NA 40.00 NA NA NA NA NA NA NA K intron_retention gro chr3R + chr3R_21869102_21869236 chr3R_21869101_21869102;chr3R_21869236_21869237 chr3R_21868717_21869101;chr3R_21869237_21869331 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 4.48 0.00 1.35 0.00 0.00 0.00 1.03 0.88 0.00 0.88 1.54 2.91 0.00 0.00 0.00 1.44 0.00 1.09 0.93 0.48 1.36 0.47 1.91 0.00 0.97 0.00 0.00 1.75 0.00 0.79 0.00 0.60 0.00 0.00 0.00 0.81 0.00 1.39 1.96 2.15 0.00 K intron_retention Best1,I_chr3R_5991957_5995913,RI_chr3R_5993184_5995905 chr3R - chr3R_5989579_5990296 chr3R_5989578_5989579;chr3R_5990296_5990297 chr3R_5988921_5989578;chr3R_5990297_5990360 73.87 72.73 NA NA NA NA NA 77.78 88.89 NA NA 84.62 88.89 NA NA NA NA NA NA NA NA 100.00 66.67 NA NA NA 60.00 NA NA NA 60.00 NA NA NA NA NA 60.00 NA NA 75.00 NA 60.00 NA 77.78 NA NA NA NA 66.67 NA 87.50 NA NA NA NA NA 41.67 NA K intron_retention PGRP-LE chrX - chrX_15696110_15696172 chrX_15696109_15696110;chrX_15696172_15696173 chrX_15695996_15696109;chrX_15696173_15696468 0.00 NA NA 5.56 NA NA NA 6.25 3.57 NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA 4.76 NA NA NA 7.69 NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 6.67 2.70 NA 4.55 NA NA NA NA 0.00 NA 2.94 0.00 NA NA NA NA 0.00 0.00 NA NA K jcn_only_AD CG5261,I_chr2L_7428611_7428877 chr2L + chr2L_7428611_7428877 chr2L_7428680_7428877 chr2L_7428878_7428977;chr2L_7428511_7428610 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.53 100.00 99.43 98.98 100.00 100.00 100.00 100.00 100.00 99.26 98.82 100.00 K intron_retention Shawn_Tyler,Shawn chrX + chrX_19508416_19508474 chrX_19508415_19508416;chrX_19508474_19508475 chrX_19508246_19508415;chrX_19508475_19508984 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 3.12 NA 0.00 0.00 NA NA NA NA 0.00 NA 2.13 0.00 0.00 0.00 NA 5.71 0.00 5.26 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10077,I_chr3L_6946805_6946872 chr3L - chr3L_6948270_6948480 chr3L_6948269_6948270;chr3L_6948480_6948481 chr3L_6946873_6948269;chr3L_6948481_6948596 0.00 0.00 0.00 2.02 0.00 0.00 1.19 2.06 0.79 0.00 0.00 0.00 1.69 0.00 0.00 1.89 0.00 0.00 1.54 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.88 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 2.99 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814174;chr2R_2814327_2814894;chr2R_2815654_2816013;chr2R_2816342_2817327;chr2R_2817604_2817753 chr2R_2814175_2814326;chr2R_2814895_2815653;chr2R_2816014_2816341;chr2R_2817328_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG31156,EFI_chr3R_18436373_18436443 chr3R - chr3R_18434806_18434867 chr3R_18434805_18434806;chr3R_18434867_18434868 chr3R_18434710_18434805;chr3R_18434868_18434997 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 K jcn_only_AA CG17715,I_chr2L_22741825_22741944,RI_chr2L_22742106_22742215,I_chr2L_22742106_22746918 chr2L + chr2L_22741988_22742055 chr2L_22741988_22742037 chr2L_22741949_22741987;chr2L_22742056_22742105 96.59 94.20 98.06 99.06 96.72 96.05 91.30 98.56 96.13 100.00 98.11 95.24 90.91 97.59 96.88 97.83 92.68 96.51 94.85 96.07 96.72 96.20 97.50 98.10 100.00 94.29 95.35 100.00 96.00 100.00 96.00 98.57 98.48 98.79 97.01 90.91 100.00 100.00 93.10 93.89 95.16 94.63 95.06 93.24 96.91 96.40 98.36 97.37 97.95 96.26 96.59 95.00 96.49 100.00 97.17 96.43 95.83 99.20 K alternative_donor sqh,I_chrX_6118043_6119039,I_chrX_6118150_6118725,I_chrX_6118150_6118729,I_chrX_6118150_6118790,I_chrX_6118150_6118800 chrX - chrX_6118150_6118729;chrX_6118150_6119035;chrX_6118150_6118725;chrX_6118150_6118949 chrX_6118150_6119039 chrX_6118050_6118149;chrX_6119040_6119139 99.38 99.38 99.17 99.60 99.71 99.72 99.41 99.58 99.28 100.00 99.71 99.45 99.40 99.69 91.15 99.57 99.34 99.68 99.26 99.56 99.38 99.47 99.15 99.77 100.00 99.75 99.57 99.26 98.60 98.97 99.17 98.67 99.18 99.48 99.14 100.00 99.18 99.21 99.61 99.21 99.55 99.32 99.04 98.78 99.17 99.45 99.76 98.38 99.15 99.47 99.37 99.68 99.27 99.32 99.32 99.55 98.97 99.02 K intron_retention CG9992 chrX - chrX_16277201_16278620 chrX_16277200_16277201;chrX_16278620_16278621 chrX_16276939_16277200;chrX_16278621_16278914 0.00 10.53 0.00 0.00 NA NA 0.00 3.57 4.65 NA 0.00 0.00 0.00 10.00 0.00 9.09 0.00 NA 0.00 0.00 0.00 5.26 0.00 0.00 NA 0.00 12.50 NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA 3.33 0.00 14.29 NA NA NA NA 8.00 12.50 NA NA NA NA NA NA NA NA K intron_retention CG15141 chr2L + chr2L_17411619_17412794 chr2L_17411618_17411619;chr2L_17412794_17412795 chr2L_17410576_17411618;chr2L_17412795_17413503 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1622,I_chrX_13192409_13192738,EI_chrX_13192857_13192928 chrX + chrX_13192857_13192928 chrX_13192856_13192857;chrX_13192928_13192929 chrX_13192757_13192856;chrX_13192929_13192997 15.38 NA NA 33.33 NA NA 12.50 41.67 15.38 NA NA NA NA NA 20.00 NA NA 25.00 33.33 22.22 NA 38.46 NA NA NA NA 25.00 23.53 5.56 0.00 6.25 10.53 15.15 40.00 NA NA NA NA NA 29.17 10.00 5.56 NA NA 9.09 10.53 NA 8.57 22.73 NA NA NA NA NA NA NA NA 13.16 K intron_retention CG1115,F_chr3R_1052705_1053045 chr3R + chr3R_1052705_1053045 chr3R_1052704_1052705;chr3R_1053045_1053046 chr3R_1052605_1052704;chr3R_1053046_1053145 100.00 NA 100.00 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA 91.67 100.00 NA NA 100.00 100.00 NA NA 88.89 NA NA 100.00 NA 100.00 NA NA 90.00 NA NA 100.00 NA NA NA 100.00 90.00 NA 100.00 100.00 90.00 NA NA 100.00 NA NA 93.75 NA K alternative_donor spi,I_chr2L_19569183_19577185,I_chr2L_19569227_19572142,I_chr2L_19569227_19577173,mir-2a-2,mir-2a-1,mir-2b-2 chr2L - chr2L_19569227_19572142 chr2L_19569227_19571571 chr2L_19569127_19569226;chr2L_19572143_19572236 100.00 100.00 100.00 100.00 100.00 100.00 99.10 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.72 99.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG3287,I_chr2R_2700203_2700285 chr2R + chr2R_2700622_2700677 chr2R_2700621_2700622;chr2R_2700677_2700678 chr2R_2700286_2700621;chr2R_2700678_2701258 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 K alternative_acceptor CG10221,CG10219 chr3R - chr3R_19580925_19580995 chr3R_19580936_19580995 chr3R_19580996_19581200;chr3R_19580343_19580924 100.00 100.00 95.83 97.56 100.00 100.00 100.00 97.78 98.00 88.89 100.00 97.50 100.00 100.00 100.00 97.78 94.44 95.00 96.77 95.65 100.00 100.00 100.00 100.00 92.31 96.00 95.24 100.00 100.00 90.91 93.75 100.00 100.00 100.00 100.00 100.00 95.24 91.67 100.00 95.45 91.67 97.78 100.00 100.00 100.00 96.97 95.65 100.00 100.00 100.00 95.65 100.00 94.44 94.74 95.83 100.00 100.00 100.00 K jcn_only_AA Gmap,I_chrX_15393496_15401194,I_chrX_15400854_15401194,I_chrX_15402291_15403750 chrX + chrX_15393496_15397618 chrX_15393496_15397615 chrX_15393449_15393495;chrX_15397619_15400494 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.00 NA NA NA 100.00 NA NA NA NA NA NA NA N cassette CG6310 chr3L - chr3L_11062407_11062747 chr3L_11062407_11062467;chr3L_11062677_11062747 chr3L_11062468_11062676 chr3L_11062129_11062406;chr3L_11062748_11063083 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette Adam,I_chr2R_5856741_5856974,I_chr2R_5856741_5857245,I_chr2R_5857058_5857250,I_chr2R_5857078_5857245 chr2R + chr2R_5856741_5857245 chr2R_5856741_5856974;chr2R_5857058_5857245 chr2R_5856975_5857057 chr2R_5856641_5856740;chr2R_5857246_5857345 98.78 98.84 98.81 99.07 100.00 98.81 98.80 94.78 99.40 97.22 96.30 97.79 96.36 98.44 98.96 97.40 98.36 98.68 100.00 99.09 97.10 96.20 96.53 100.00 100.00 95.89 97.06 98.88 96.36 97.67 96.74 100.00 100.00 100.00 95.89 98.57 98.03 100.00 100.00 98.38 96.67 99.42 98.41 100.00 99.22 99.25 99.07 99.14 97.14 100.00 96.15 98.78 99.02 95.65 97.78 98.13 100.00 100.00 K jcn_only_AD Myb,RI_chrX_15752571_15753225 chrX - chrX_15751579_15751682;chrX_15751579_15751709;chrX_15751579_15751749 chrX_15751579_15751673 chrX_15749823_15751578;chrX_15751750_15751876 86.99 92.31 92.06 86.57 86.79 89.13 82.09 86.14 85.98 83.33 82.05 90.91 93.33 86.30 95.45 90.73 84.21 91.11 92.73 84.43 77.08 92.31 86.21 87.18 89.66 86.36 89.74 76.19 84.85 85.71 87.50 77.55 74.65 89.72 86.36 95.65 82.86 88.89 92.31 79.22 83.33 81.52 85.11 91.94 87.50 91.40 86.49 87.30 88.49 NA 88.89 81.58 88.89 77.27 91.89 89.29 82.76 88.70 K alternative_donor tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5960163;chr3R_5959310_5960101;chr3R_5959310_5960041;chr3R_5959310_5959789;chr3R_5959310_5960049;chr3R_5959310_5960182;chr3R_5959310_5960026;chr3R_5959310_5959679 chr3R_5959310_5960158 chr3R_5958937_5959309;chr3R_5960183_5960224 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG15099,CG15100 chr2R - chr2R_14730185_14730239 chr2R_14730184_14730185;chr2R_14730239_14730240 chr2R_14726182_14730184;chr2R_14730240_14730348 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 1.28 0.00 0.00 1.52 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA smid,I_chr3L_7375166_7375310,I_chr3L_7375435_7375508 chr3L + chr3L_7375435_7375508 chr3L_7375435_7375486 chr3L_7375335_7375434;chr3L_7375509_7375574 100.00 100.00 98.78 100.00 98.80 98.21 100.00 99.24 100.00 100.00 100.00 99.41 98.59 98.51 98.89 99.39 100.00 100.00 100.00 99.50 100.00 100.00 100.00 99.10 100.00 100.00 100.00 98.92 98.57 100.00 100.00 97.56 100.00 99.19 100.00 100.00 97.08 100.00 100.00 99.38 98.72 100.00 100.00 99.25 100.00 100.00 100.00 99.02 99.36 100.00 100.00 100.00 98.11 100.00 98.17 100.00 100.00 100.00 K intron_retention CG30122,I_chr2R_14526123_14526189 chr2R - chr2R_14522447_14523647 chr2R_14522446_14522447;chr2R_14523647_14523648 chr2R_14522312_14522446;chr2R_14523648_14523776 12.90 14.15 19.59 12.02 9.20 7.55 20.26 11.43 14.34 13.21 14.63 11.87 14.43 9.43 11.54 50.98 14.78 13.33 12.59 16.96 10.84 12.50 16.51 6.73 12.50 15.12 15.56 18.52 19.67 27.72 14.81 12.50 11.66 13.24 16.46 48.25 19.23 16.33 15.73 12.90 12.10 9.61 13.27 15.38 8.33 13.53 10.42 11.80 13.11 7.29 11.86 8.11 12.31 9.46 10.93 7.76 9.90 7.84 K intron_retention mmd chrX - chrX_15847968_15848318 chrX_15847967_15847968;chrX_15848318_15848319 chrX_15847906_15847967;chrX_15848319_15848477 0.00 NA NA NA NA 0.00 0.00 0.00 8.11 NA NA 0.00 15.00 0.00 0.00 NA 0.00 0.00 5.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention Cip4,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4324451_4324921 chr3L_4324450_4324451;chr3L_4324921_4324922 chr3L_4324284_4324450;chr3L_4324922_4324996 62.22 52.00 59.32 58.11 62.22 68.89 66.67 65.82 62.04 88.89 58.33 57.27 84.38 73.33 57.63 67.21 71.05 89.23 69.64 59.57 71.88 60.00 56.82 59.32 46.27 61.67 60.94 63.16 81.82 59.52 67.24 56.52 55.26 61.43 72.41 64.10 68.25 71.43 56.16 36.84 69.70 59.22 55.26 52.83 77.27 59.52 66.67 65.31 62.50 56.25 58.21 67.57 64.71 52.00 57.14 73.08 65.45 68.29 K intron_retention CG17337,REI_chr2R_1585514_1586790,I_chr2R_1585514_1586919,RI_chr2R_1586737_1586790 chr2R + chr2R_1586730_1586790 chr2R_1586729_1586730;chr2R_1586790_1586791 chr2R_1586637_1586729;chr2R_1586791_1586858 0.00 0.00 2.70 3.57 0.00 0.00 0.87 1.31 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 9.68 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 2.15 0.00 0.00 1.32 0.00 4.00 0.00 0.00 0.00 2.30 1.14 1.14 0.00 K intron_retention Scsalpha,I_chr3L_3817163_3817436,I_chr3L_3817289_3817436 chr3L + chr3L_3817081_3817436 chr3L_3817080_3817081;chr3L_3817436_3817437 chr3L_3817063_3817080;chr3L_3817437_3817536 0.00 0.35 0.00 0.64 0.00 0.00 0.53 0.82 0.00 0.00 0.00 0.00 0.67 0.00 0.35 0.00 0.00 0.00 0.00 0.39 0.00 2.48 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.78 0.00 0.82 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.77 0.50 0.00 0.66 0.00 0.00 0.00 0.39 0.00 0.22 0.00 K jcn_only_AD CG7081,I_chr3L_8332291_8332360,DNApol-alpha50 chr3L + chr3L_8332291_8332356 chr3L_8332305_8332356 chr3L_8332357_8332424;chr3L_8332275_8332290 5.00 NA 0.00 5.13 NA NA 6.12 12.20 2.86 NA NA 13.51 NA 0.00 0.00 5.56 NA NA 5.00 0.00 NA 0.00 NA NA NA 8.33 NA NA NA NA 10.00 NA 8.00 5.13 NA NA NA NA 4.17 3.33 9.09 6.06 NA 0.00 NA 11.54 NA 3.33 10.91 NA 3.85 NA NA NA 0.00 5.00 2.50 4.55 K intron_retention Sap-r,E_chr3R_26711286_26714646,I_chr3R_26712266_26712343,I_chr3R_26712627_26714606,RI_chr3R_26713323_26714382 chr3R - chr3R_26712270_26712343 chr3R_26712269_26712270;chr3R_26712343_26712344 chr3R_26710442_26712269;chr3R_26712344_26712443 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA l(1)G0196,I_chrX_21900456_21904601 chrX + chrX_21898150_21898212;chrX_21898150_21898215 chrX_21898150_21898203 chrX_21897878_21898149;chrX_21898216_21898384 64.26 69.86 65.79 67.78 63.64 70.42 55.13 70.30 61.81 58.54 66.67 59.20 45.83 53.52 58.42 63.95 62.86 67.74 58.11 59.22 77.36 67.31 70.11 62.71 52.50 70.49 71.21 70.00 69.57 64.00 59.46 NA 63.04 66.96 73.08 62.50 60.64 66.67 66.20 54.84 60.00 70.62 75.00 57.58 66.67 58.93 56.82 47.92 66.67 68.00 72.31 69.23 74.19 64.52 58.59 63.41 65.22 62.86 K alternative_acceptor CG3529,CG3552 chr3L + chr3L_9451458_9451520 chr3L_9451458_9451510 chr3L_9451296_9451457;chr3L_9451521_9452216 100.00 NA NA 87.50 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA 100.00 87.50 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 100.00 K intron_retention CG15356 chr2L - chr2L_1976814_1976909 chr2L_1976813_1976814;chr2L_1976909_1976910 chr2L_1975488_1976813;chr2L_1976910_1979202 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 K jcn_only_AA ena chr2R + chr2R_15046858_15047299 chr2R_15046858_15047287 chr2R_15046625_15046857;chr2R_15047300_15047324 23.10 31.33 19.57 28.90 26.62 26.14 22.22 23.41 23.10 25.00 18.01 19.34 22.77 20.62 24.35 23.60 30.00 30.53 26.77 22.12 16.80 30.98 19.60 23.16 26.26 27.64 20.39 23.29 25.29 21.57 21.05 22.40 17.40 16.98 26.04 39.33 25.73 37.14 23.73 21.03 18.85 23.00 26.42 29.27 17.58 20.63 19.71 22.02 23.34 21.10 15.75 34.48 17.65 19.18 25.50 34.52 18.82 18.07 K jcn_only_AD pes chr2L - chr2L_7991620_7993840;chr2L_7991620_7994134 chr2L_7991620_7994109 chr2L_7991358_7991619;chr2L_7994135_7994182 5.08 5.03 6.75 8.72 6.74 5.56 3.00 3.78 4.96 4.50 3.14 9.00 2.45 6.22 6.37 4.15 7.45 7.96 5.41 5.41 3.90 5.46 5.91 6.02 9.68 3.96 7.66 10.69 5.08 3.23 6.75 3.90 1.52 3.24 5.04 1.67 8.70 5.97 8.88 3.17 1.38 6.90 3.55 2.91 9.46 2.65 4.85 1.28 3.46 6.25 5.53 8.11 2.13 5.71 7.17 3.77 4.07 0.38 K intron_retention RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817,snoRNA:Psi28S-2444 chr2R + chr2R_15330246_15330317 chr2R_15330245_15330246;chr2R_15330317_15330318 chr2R_15330177_15330245;chr2R_15330318_15330383 100.00 100.00 99.42 100.00 99.17 100.00 100.00 99.43 100.00 99.64 100.00 100.00 100.00 100.00 99.45 100.00 99.06 100.00 99.14 99.74 99.12 100.00 99.84 99.83 100.00 100.00 99.81 100.00 100.00 100.00 100.00 100.00 100.00 99.49 100.00 100.00 100.00 100.00 100.00 99.75 99.75 100.00 100.00 100.00 100.00 99.81 100.00 100.00 100.00 100.00 99.83 100.00 99.87 99.87 100.00 100.00 99.86 100.00 K alternative_acceptor gish chr3R + chr3R_12100604_12100675;chr3R_12100604_12100684 chr3R_12100604_12100709 chr3R_12100535_12100603;chr3R_12100710_12100891 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 1.04 1.59 0.00 0.64 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 1.28 1.75 0.00 1.15 1.79 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD e(y)3,I_chrX_19530503_19530884,I_chrX_19530503_19531405 chrX - chrX_19530503_19531650;chrX_19530503_19530884;chrX_19530503_19532222 chrX_19530503_19531405 chrX_19530403_19530502;chrX_19532223_19532322 6.40 0.00 6.25 9.26 7.84 1.69 10.42 9.52 4.85 3.57 0.00 11.96 10.20 6.25 1.82 3.45 3.85 2.50 4.17 11.88 0.00 6.56 4.44 7.81 8.62 13.16 3.39 6.67 14.29 11.54 1.89 8.33 18.52 3.49 14.00 14.00 3.00 0.00 5.63 10.00 15.00 12.37 10.42 2.56 0.00 13.95 10.71 15.28 10.31 4.00 5.63 0.00 11.11 NA 6.06 4.35 0.00 18.42 K intron_retention CG5168 chr2L + chr2L_10424099_10424370 chr2L_10424098_10424099;chr2L_10424370_10424371 chr2L_10423751_10424098;chr2L_10424371_10424483 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG2698,I_chr3R_3828169_3828941,I_chr3R_3828880_3828941,I_chr3R_3829483_3829715,I_chr3R_3830586_3830981 chr3R + chr3R_3828880_3828941 chr3R_3828882_3828941 chr3R_3828942_3829007;chr3R_3828813_3828879 97.91 94.44 91.89 98.39 93.55 100.00 98.31 95.65 100.00 NA 100.00 95.92 95.00 95.65 92.00 100.00 NA 100.00 96.00 96.20 100.00 93.88 98.46 97.06 96.43 100.00 100.00 NA 97.73 100.00 93.55 NA NA 92.98 100.00 97.78 97.50 100.00 97.22 97.18 93.33 100.00 95.24 98.68 100.00 100.00 96.55 100.00 98.18 98.04 92.11 100.00 NA NA 100.00 100.00 92.31 100.00 K multi_cassette Spn,I_chr3L_2511764_2512148 chr3L - chr3L_2508866_2511162 chr3L_2508866_2509363;chr3L_2509501_2509761;chr3L_2510576_2511162 chr3L_2509364_2509500;chr3L_2509762_2510575 chr3L_2508639_2508865;chr3L_2511163_2511763 93.75 90.91 83.33 88.89 100.00 100.00 100.00 90.91 100.00 87.50 100.00 92.86 80.00 100.00 87.50 83.33 100.00 100.00 100.00 100.00 100.00 87.50 93.75 92.31 100.00 75.00 100.00 100.00 100.00 91.67 85.71 87.50 91.67 90.91 100.00 100.00 94.12 100.00 94.12 95.24 87.50 100.00 100.00 92.31 88.89 72.73 90.91 100.00 100.00 92.31 92.86 100.00 90.00 87.50 88.89 100.00 100.00 90.00 K alternative_donor APC4,I_chrX_8978433_8978480,RI_chrX_8980352_8980400 chrX + chrX_8978203_8978269 chrX_8978209_8978269 chrX_8978270_8978432;chrX_8978032_8978202 54.55 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 70.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 54.55 NA 70.00 NA NA NA NA NA NA NA K jcn_only_AD osa,I_chr3R_13542657_13542834,I_chr3R_13542657_13543500,I_chr3R_13542657_13543662,I_chr3R_13542657_13543668 chr3R - chr3R_13542657_13543968;chr3R_13542657_13543662;chr3R_13542657_13542834;chr3R_13542657_13543668;chr3R_13542657_13543677 chr3R_13542657_13543500 chr3R_13542557_13542656;chr3R_13543969_13544017 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.65 0.00 1.47 0.00 0.58 0.83 0.00 0.00 1.89 0.00 0.00 0.00 0.50 0.00 0.00 0.00 1.19 0.00 1.37 3.16 0.00 0.00 0.79 1.47 0.00 0.67 0.00 1.41 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.51 0.00 0.70 1.37 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention E_chr2L_20647810_20648188,CG2614 chr2L + chr2L_20658405_20658461 chr2L_20658404_20658405;chr2L_20658461_20658462 chr2L_20658224_20658404;chr2L_20658462_20658601 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 K intron_retention RpS16,RI_chr2R_18493796_18494013,I_chr2R_18494146_18494441,snoRNA:Psi28S-1175a,snoRNA:Psi28S-1175b,snoRNA:Psi28S-1175c,snoRNA:Or-aca1,Vps20 chr2R + chr2R_18494554_18495259 chr2R_18494553_18494554;chr2R_18495259_18495260 chr2R_18494439_18494553;chr2R_18495260_18495508 0.02 0.01 0.05 0.02 0.00 0.00 0.00 0.04 0.04 0.00 0.00 0.04 0.00 0.00 0.04 0.05 0.05 0.02 0.03 0.02 0.00 0.00 0.00 0.00 0.00 0.03 0.06 0.11 0.02 0.00 0.00 0.03 0.01 0.02 0.00 0.03 0.00 0.00 0.02 0.01 0.02 0.02 0.00 0.00 0.00 0.02 0.00 0.02 0.03 0.03 0.03 0.00 0.00 0.00 0.02 0.00 0.02 0.03 N alternative_acceptor stc chr2L + chr2L_15114214_15114448;chr2L_15114214_15114299 chr2L_15114214_15114311 chr2L_15114049_15114213;chr2L_15114449_15115753 4.05 3.08 7.81 4.04 4.08 4.17 7.07 5.32 5.34 4.35 3.92 3.92 3.51 5.08 11.27 2.27 0.00 3.57 3.64 4.05 10.87 3.94 6.82 2.13 1.61 6.90 2.44 5.83 3.96 4.46 8.06 3.90 3.35 6.25 6.41 3.41 2.94 2.82 2.02 4.00 4.44 7.76 4.17 4.20 3.53 6.78 2.99 3.91 5.56 5.80 3.79 11.76 0.00 4.08 9.09 3.23 12.31 3.90 K jcn_only_AD CG5059,I_chr3L_20509233_20511440,I_chr3L_20509985_20510360 chr3L - chr3L_20509233_20512316 chr3L_20509233_20512067 chr3L_20509133_20509232;chr3L_20512317_20512503 92.06 98.21 93.42 95.12 88.00 93.33 94.83 96.18 95.36 96.77 93.85 89.80 90.10 94.44 91.36 88.37 90.62 96.36 91.89 94.20 97.10 71.11 91.89 93.67 87.18 92.50 97.40 86.67 81.16 89.36 92.06 82.76 83.33 89.52 90.91 87.50 93.62 96.10 95.65 87.18 84.00 89.39 96.61 86.11 96.67 88.52 96.15 86.67 95.08 80.77 92.55 92.86 89.13 84.75 94.03 98.48 94.32 86.11 K alternative_acceptor CG14646 chr3R + chr3R_216781_216836 chr3R_216781_216832 chr3R_216400_216780;chr3R_216837_217542 97.50 97.14 96.88 96.72 100.00 100.00 97.67 100.00 98.57 100.00 96.55 100.00 97.14 96.97 97.14 98.08 96.88 96.55 100.00 96.00 97.22 100.00 98.00 100.00 100.00 100.00 100.00 94.12 88.00 100.00 92.00 100.00 95.00 100.00 100.00 96.88 97.37 96.43 97.87 96.00 100.00 95.65 96.77 100.00 95.83 97.96 97.44 90.00 100.00 100.00 98.18 96.30 96.30 97.50 97.78 96.88 100.00 97.37 K jcn_only_AA CG2219,noncoding_20558,RI_chr4_202143_202194 chr4 - chr4_202136_202194 chr4_202143_202194 chr4_202195_202294;chr4_202043_202135 78.53 79.03 78.57 72.73 60.53 75.00 70.49 75.47 72.67 85.00 71.15 78.43 79.35 84.06 71.74 80.58 64.81 73.68 73.13 80.85 81.58 88.00 90.00 81.61 75.00 NA 81.13 84.00 81.82 78.85 69.51 73.81 72.31 72.50 79.81 77.42 74.07 77.42 79.31 78.57 82.43 73.26 75.56 84.78 82.26 78.49 81.16 76.71 71.85 83.33 83.10 75.00 80.39 79.20 55.56 78.90 81.77 77.73 K alternative_acceptor CG8765,RI_chr3L_19679741_19679894 chr3L - chr3L_19679741_19679894 chr3L_19679747_19679894 chr3L_19679895_19679994;chr3L_19679641_19679740 94.12 NA NA 87.50 NA NA NA 87.50 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 90.91 NA NA NA 90.00 NA 90.00 87.50 87.50 NA 100.00 100.00 NA NA 100.00 100.00 NA 92.31 100.00 100.00 NA NA NA 88.89 NA 94.12 90.91 NA NA NA NA NA NA NA NA NA K intron_retention CG17665 chr2R - chr2R_123868_123917 chr2R_123867_123868;chr2R_123917_123918 chr2R_123742_123867;chr2R_123918_124062 0.00 0.00 10.00 2.00 0.00 0.00 3.92 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 6.25 0.00 0.00 0.00 3.57 0.00 NA 0.00 0.00 NA NA 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 5.00 0.00 0.00 0.00 0.00 0.00 3.23 2.94 0.00 0.00 K intron_retention akirin,I_chr3L_7363173_7364806,I_chr3L_7363177_7364806,I_chr3L_7363177_7364831,I_chr3L_7363211_7364831,I_chr3L_7363731_7364806,I_chr3L_7364126_7364806,RI_chr3L_7364737_7364806 chr3L + chr3L_7363211_7364831 chr3L_7363210_7363211;chr3L_7364831_7364832 chr3L_7363111_7363210;chr3L_7364832_7364906 99.05 98.85 99.02 100.00 100.00 100.00 100.00 99.47 99.56 97.14 98.82 99.43 99.03 98.98 100.00 98.87 100.00 98.85 100.00 99.53 99.05 98.41 99.14 98.77 98.21 100.00 100.00 98.11 98.28 96.88 100.00 97.14 94.00 99.45 98.36 100.00 96.55 100.00 100.00 99.04 98.15 99.49 100.00 100.00 98.00 98.72 100.00 97.30 98.04 98.75 98.98 100.00 96.08 100.00 99.20 100.00 100.00 98.46 K intron_retention I_chr2R_13334737_13336615,I_chr2R_13334737_13336769,mthl3 chr2R - chr2R_13336331_13336769 chr2R_13336330_13336331;chr2R_13336769_13336770 chr2R_13336084_13336330;chr2R_13336770_13336869 2.63 6.25 0.00 13.64 0.00 0.00 1.89 1.89 7.41 NA 7.69 1.28 2.56 0.00 0.00 5.00 5.13 NA 2.00 4.00 5.56 NA 2.50 4.55 25.00 0.00 9.09 0.00 0.00 0.00 5.71 4.00 0.00 7.35 0.00 0.00 9.76 0.00 0.00 0.00 5.71 8.33 2.70 3.92 0.00 7.14 4.44 7.41 4.05 0.00 0.00 5.26 3.70 0.00 1.89 5.26 9.09 0.00 K alternative_donor CG1970,I_chr4_590803_590943,I_chr4_590970_591030 chr4 - chr4_590803_590943 chr4_590803_590859 chr4_590703_590802;chr4_590944_590969 98.88 100.00 98.90 96.26 100.00 97.65 100.00 100.00 98.76 97.87 98.48 97.22 98.46 100.00 98.92 97.73 98.51 98.85 98.72 97.77 100.00 100.00 98.98 99.12 97.92 100.00 98.82 100.00 100.00 98.63 100.00 100.00 95.92 99.05 100.00 95.83 99.18 98.88 97.46 100.00 97.56 98.71 100.00 100.00 98.59 98.86 98.94 100.00 98.52 98.44 99.07 100.00 98.70 98.55 99.05 98.67 100.00 98.68 K jcn_only_AD scrib,I_chr3R_22362324_22363015,I_chr3R_22381374_22399575,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22362244_22363092;chr3R_22362120_22363092;chr3R_22362315_22363092;chr3R_22362254_22363092;chr3R_22362324_22363092;chr3R_22362142_22363092 chr3R_22362224_22363092 chr3R_22363093_22363115;chr3R_22362112_22362119 4.96 6.41 8.57 7.74 5.00 9.09 3.33 3.09 3.56 3.77 6.10 3.21 2.67 4.49 6.12 5.50 4.55 3.33 7.07 3.10 4.65 3.36 3.23 12.12 7.81 3.75 7.69 6.76 7.19 3.79 6.25 1.35 1.08 3.47 3.82 4.76 2.38 8.96 6.74 1.89 6.06 6.25 4.88 5.88 14.93 12.04 5.77 7.60 6.96 2.08 6.56 4.29 6.98 3.70 4.96 6.12 2.22 3.87 K jcn_only_AA CG6701,RI_chr2R_9866395_9866446,RI_chr2R_9866896_9867532 chr2R - chr2R_9865355_9866446;chr2R_9865335_9866446 chr2R_9866395_9866446 chr2R_9866447_9866546;chr2R_9865150_9865334 0.54 0.00 0.00 0.36 0.00 0.55 1.60 0.00 0.48 1.06 1.30 0.96 1.04 0.53 1.38 0.00 0.61 0.54 0.00 0.29 0.68 0.62 0.00 0.68 0.00 0.45 1.99 0.00 0.73 0.00 1.86 4.17 1.30 0.00 1.10 0.00 0.56 1.61 0.00 0.97 0.00 1.04 1.27 0.57 6.78 1.28 0.00 1.63 0.00 0.00 1.52 0.00 0.00 0.00 0.44 0.00 0.00 0.99 K intron_retention CG16718,RI_chr3R_15464150_15464400,EI_chr3R_15465136_15466705 chr3R - chr3R_15459875_15459933 chr3R_15459874_15459875;chr3R_15459933_15459934 chr3R_15459734_15459874;chr3R_15459934_15460072 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 K jcn_only_AA SWAP,RI_chrX_938935_938985,I_chrX_941459_982652 chrX + chrX_938935_939003 chrX_938935_938985 chrX_938835_938934;chrX_939004_939085 0.00 2.78 0.00 0.00 0.00 0.00 2.50 0.00 1.28 6.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 3.45 4.55 0.00 2.41 1.67 1.82 0.00 0.00 3.85 0.00 0.00 0.00 1.41 0.00 0.00 1.52 2.33 2.22 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 1.49 1.23 3.64 0.00 0.00 1.47 0.00 3.23 0.00 2.44 0.00 0.00 1.64 0.81 K intron_retention Sr-CIV,F_chr2L_3528916_3528977 chr2L - chr2L_3523673_3523752 chr2L_3523672_3523673;chr2L_3523752_3523753 chr2L_3523144_3523672;chr2L_3523753_3524105 0.00 NA 3.23 0.00 0.00 0.00 1.89 0.00 0.00 NA 0.00 0.00 7.89 0.00 3.45 1.82 3.45 0.00 3.23 3.64 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA 1.64 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA K jcn_only_AD Cyp1,RI_chrX_16212641_16213159,RI_chrX_16212641_16213308,I_chrX_16212641_16213680,I_chrX_16212641_16213960 chrX - chrX_16212641_16213960;chrX_16212641_16214111 chrX_16212641_16213308 chrX_16212541_16212640;chrX_16214112_16214235 0.04 0.00 0.08 0.08 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.12 0.08 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.12 0.03 0.08 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.06 0.00 0.08 0.08 0.04 0.10 0.07 0.03 0.10 0.07 0.05 0.06 0.09 0.10 0.04 0.05 0.18 0.06 0.05 0.04 0.00 0.16 0.00 0.04 K intron_retention gro chr3R + chr3R_21874158_21874219 chr3R_21874157_21874158;chr3R_21874219_21874220 chr3R_21873958_21874157;chr3R_21874220_21875475 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824089_11825951 chr2R_11824089_11825183;chr2R_11825385_11825619;chr2R_11825773_11825951 chr2R_11825184_11825384;chr2R_11825620_11825772 chr2R_11823989_11824088;chr2R_11825952_11826483 0.00 1.69 0.00 33.33 2.86 4.17 2.27 0.00 0.00 0.00 6.45 4.88 10.00 3.57 3.45 5.88 0.00 0.00 0.00 3.39 3.57 0.00 0.00 0.00 0.00 0.00 0.00 3.17 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 4.17 2.33 0.00 1.92 0.00 0.00 0.00 0.00 3.45 0.00 4.44 1.72 0.00 K intron_retention EF_chr2L_12038171_12038292,CG6766 chr2L - chr2L_12039328_12039384 chr2L_12039327_12039328;chr2L_12039384_12039385 chr2L_12038584_12039327;chr2L_12039385_12040202 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor mys,I_chrX_7958795_7961094 chrX + chrX_7955904_7957872;chrX_7955908_7957872;chrX_7955914_7957872;chrX_7955759_7957872;chrX_7955901_7957872;chrX_7956125_7957872;chrX_7955967_7957872 chrX_7956114_7957872 chrX_7957873_7958492;chrX_7955741_7955758 2.44 4.48 0.76 4.26 0.00 0.91 2.92 1.20 1.36 2.44 1.67 1.53 0.00 2.13 1.94 1.72 1.60 7.09 1.91 1.72 0.81 3.85 4.35 3.85 6.12 2.47 5.36 5.41 4.07 4.26 1.33 3.39 3.41 1.68 5.08 5.56 1.48 0.00 2.35 2.62 5.77 1.01 0.00 3.06 2.20 3.09 2.08 2.35 1.54 6.06 3.00 5.08 1.79 6.25 1.69 3.33 3.80 3.08 N mutually_exclusive CG32521,CREF_chrX_21082827_21152068,EF_chrX_21094675_21152068,CG1722 chrX - chrX_21082827_21150208,chrX_21150214_21152072 chrX_21082827_21094606,chrX_21094675_21152072 chrX_21150209_21150213 chrX_21094607_21094674 chrX_21082727_21082826;chrX_21152073_21152168 66.03 75.00 75.00 71.43 NA 75.00 NA 61.90 60.00 NA NA 61.54 50.00 57.14 66.67 50.00 60.00 NA 66.67 65.38 NA 65.00 75.00 71.43 NA 75.00 75.00 88.89 NA NA 57.14 NA 55.56 53.33 85.71 NA 42.86 NA 85.71 37.50 NA 58.82 70.00 42.86 NA 62.50 71.43 57.14 71.43 70.00 63.64 NA 57.14 NA 80.00 NA 66.67 66.67 K intron_retention Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2608645_2610493 chr3L_2608644_2608645;chr3L_2610493_2610494 chr3L_2608526_2608644;chr3L_2610494_2611159 2.47 2.67 1.39 1.62 1.38 2.27 3.76 1.66 1.32 7.69 6.58 3.82 2.59 1.51 1.59 1.03 0.95 30.79 2.58 1.25 5.69 4.21 1.64 2.65 3.15 1.26 4.69 6.98 8.45 2.15 1.92 3.57 0.37 1.49 2.66 7.21 2.98 2.47 2.44 2.35 1.49 1.32 1.04 2.10 1.86 1.83 2.84 2.48 1.35 3.69 3.46 3.13 2.77 3.65 1.28 3.88 6.15 1.63 K jcn_only_AA CAP-D2 chr3R + chr3R_25501579_25501909;chr3R_25501579_25501655 chr3R_25501579_25501620 chr3R_25501398_25501578;chr3R_25501910_25501927 0.00 0.00 0.00 1.37 0.00 0.00 0.00 1.28 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 3.03 NA 0.00 0.00 0.00 3.33 4.35 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 1.08 NA 0.00 NA NA NA 0.00 NA NA NA K jcn_only_AA CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042888_5043077;chr2L_5043017_5043077;chr2L_5042885_5043077 chr2L_5042891_5043077 chr2L_5043078_5043083 77.78 NA 76.92 81.25 NA NA 75.00 73.17 80.36 NA NA 75.00 64.71 84.38 77.78 80.00 90.91 NA 72.73 79.03 68.00 NA 77.78 90.91 NA NA NA NA NA NA 84.00 NA NA 75.61 NA NA NA NA NA NA NA 87.50 77.78 NA NA 76.00 69.57 NA 77.14 84.85 90.00 92.00 NA NA 77.78 85.00 68.57 NA K intron_retention CG1737 chrX + chrX_11244877_11245026 chrX_11244876_11244877;chrX_11245026_11245027 chrX_11244667_11244876;chrX_11245027_11245310 100.00 96.00 100.00 100.00 95.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 96.97 96.43 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD RpL36A,I_chr2L_8042614_8042691 chr2L - chr2L_8042614_8042822 chr2L_8042614_8042691 chr2L_8042514_8042613;chr2L_8042823_8042836 0.65 0.40 0.14 0.08 0.12 0.15 0.23 0.08 0.07 0.73 0.02 0.19 0.19 0.10 0.09 0.18 0.09 0.11 0.09 0.10 0.07 3.44 1.80 1.10 1.47 0.12 1.33 4.55 3.68 3.43 0.73 0.88 0.84 0.08 3.88 5.24 0.74 1.04 1.37 1.79 1.75 0.05 0.23 4.05 0.35 4.38 3.08 1.56 0.22 0.65 7.00 0.54 1.70 10.00 0.09 0.78 0.44 0.98 K alternative_donor mtSSB,I_chr3R_12030259_12030507 chr3R - chr3R_12030259_12030615 chr3R_12030259_12030507 chr3R_12030159_12030258;chr3R_12030616_12030724 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.29 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.27 1.08 0.00 0.00 0.00 0.43 0.65 1.24 1.40 0.62 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.34 1.01 0.31 0.00 0.00 0.00 0.65 0.00 0.00 0.38 0.29 0.00 0.00 0.31 0.00 0.00 0.00 0.28 0.00 K intron_retention CG33111,I_chr3R_19633752_19633821,eIF4G2 chr3R - chr3R_19642753_19643948 chr3R_19642752_19642753;chr3R_19643948_19643949 chr3R_19642375_19642752;chr3R_19643949_19644333 7.50 11.76 0.00 6.45 11.11 0.00 25.00 0.00 0.00 12.50 11.76 3.51 NA 8.70 6.67 2.70 0.00 0.00 0.00 5.00 5.26 22.73 6.25 NA NA 20.00 12.50 33.33 10.00 NA 8.33 NA 25.00 3.77 9.52 14.29 0.00 12.50 9.09 25.00 NA 6.38 0.00 16.00 NA NA NA 33.33 3.92 NA 0.00 NA NA NA 5.88 NA NA 25.00 K intron_retention CG4420,I_chrX_16335942_16337525 chrX + chrX_16336054_16337525 chrX_16336053_16336054;chrX_16337525_16337526 chrX_16335426_16336053;chrX_16337526_16337625 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 1.44 0.00 0.00 0.46 0.00 1.15 0.00 0.00 0.00 5.13 0.00 0.00 1.15 1.85 0.92 0.49 0.00 0.00 1.35 0.00 5.92 0.00 2.00 0.00 1.06 1.38 0.00 0.00 0.00 0.00 0.00 0.91 0.00 1.05 0.00 0.00 0.00 0.95 0.00 1.20 0.98 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 K alternative_acceptor dwg,RI_chrX_2622297_2622355,RI_chrX_2622297_2622430,RI_chrX_2622435_2622577,RI_chrX_2627170_2627263 chrX + chrX_2622297_2622577;chrX_2622297_2622430 chrX_2622297_2622355 chrX_2622197_2622296;chrX_2622578_2622677 9.09 5.71 3.03 15.15 5.26 6.45 21.05 11.36 12.24 8.33 3.57 6.78 14.29 3.45 5.71 10.00 5.00 14.29 6.06 8.57 18.18 28.57 4.35 14.71 3.33 14.81 9.30 5.88 7.89 15.15 20.31 7.14 15.91 16.28 7.69 7.41 11.11 12.00 9.68 8.93 9.09 9.09 10.71 10.81 9.30 6.90 14.29 3.77 10.91 11.11 12.50 13.33 2.86 7.89 12.90 8.57 8.82 5.45 K jcn_only_AD vib,RI_chr3R_15051793_15051920,RI_chr3R_15051793_15052186 chr3R - chr3R_15051793_15051920;chr3R_15051793_15052186 chr3R_15051793_15052202 chr3R_15051737_15051792;chr3R_15052203_15052286 93.59 95.86 92.70 91.01 91.89 92.00 90.32 89.18 91.32 88.89 91.67 93.97 93.41 88.98 96.00 90.99 91.25 97.12 89.93 93.09 91.41 91.21 93.75 93.72 93.40 97.37 95.63 90.67 96.55 93.66 97.97 90.35 90.12 88.32 94.62 94.23 95.28 98.23 96.32 95.20 93.59 92.83 93.68 94.66 92.74 92.86 96.26 93.33 91.64 95.62 95.58 97.14 96.27 97.20 94.74 94.97 95.02 92.56 K alternative_donor CG3919 chr3L + chr3L_14405237_14405355 chr3L_14405285_14405355 chr3L_14405356_14405772;chr3L_14405135_14405236 4.17 NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA 4.17 NA 0.00 NA NA NA NA NA NA 30.77 NA NA NA 0.00 6.25 NA NA NA NA 7.14 0.00 NA 5.00 NA NA NA NA NA 5.88 NA NA 12.50 NA 0.00 NA NA NA NA 4.17 K alternative_donor lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22817658_22817713;chr2L_22817556_22817713 chr2L_22817653_22817713 chr2L_22817714_22817839;chr2L_22817553_22817555 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 4.17 0.00 0.00 0.00 5.88 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 NA 5.56 0.00 0.00 0.00 K alternative_acceptor RpL35A,I_chr3R_1292099_1292701,I_chr3R_1292104_1292512,I_chr3R_1292125_1292701 chr3R - chr3R_1292104_1292701 chr3R_1292125_1292701 chr3R_1292702_1292730;chr3R_1292047_1292103 0.18 0.27 0.16 0.14 0.15 0.00 0.18 0.14 0.13 0.18 0.07 0.14 0.18 0.10 0.19 0.25 0.05 0.14 0.13 0.07 0.00 0.21 0.31 0.23 0.28 0.15 0.39 1.95 0.28 0.60 0.08 0.27 0.00 0.10 0.17 0.43 0.12 0.11 0.16 0.32 0.82 0.14 0.11 0.25 0.14 0.53 0.25 0.29 0.22 0.31 0.30 0.18 0.21 0.49 0.10 0.28 0.22 0.45 K intron_retention dpr3 chr2L - chr2L_2062300_2065610 chr2L_2062299_2062300;chr2L_2065610_2065611 chr2L_2061975_2062299;chr2L_2065611_2065743 0.00 0.00 0.00 10.59 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG12393,CG9135 chr2L + chr2L_6048126_6048511 chr2L_6048126_6048226 chr2L_6048106_6048125;chr2L_6048512_6048626 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Rho1,I_chr2R_11990455_11992537,RI_chr2R_11991687_11992537 chr2R + chr2R_11990362_11991115;chr2R_11990326_11991115;chr2R_11990398_11991115 chr2R_11990814_11991115 chr2R_11991116_11991279;chr2R_11990232_11990325 29.52 NA NA 33.33 NA NA 25.00 13.33 35.71 NA NA 29.03 NA NA 30.43 20.59 NA NA NA 17.86 NA NA NA NA NA NA NA NA 37.50 NA NA NA NA 29.03 NA NA NA NA NA NA NA 28.12 NA NA NA 51.85 NA NA 30.00 NA 38.10 NA NA NA 21.74 NA NA 63.33 N cassette Rip11,E_chrX_18532733_18533695,RI_chrX_18530353_18530870,RI_chrX_18530742_18530870,RI_chrX_18544139_18544185 chrX - chrX_18530353_18531445;chrX_18530353_18531363 chrX_18530353_18530870;chrX_18530907_18531445,chrX_18530907_18531363 chrX_18530871_18530906 chrX_18530253_18530352;chrX_18531446_18531606 50.54 44.20 66.67 71.07 28.38 22.88 37.45 50.57 48.38 52.63 44.06 72.04 72.48 60.77 51.08 81.62 45.38 52.99 50.33 51.67 47.83 67.69 51.64 44.00 41.77 61.34 51.24 46.43 48.31 66.67 63.16 64.20 62.96 47.39 45.00 44.65 52.03 45.14 35.22 57.14 59.93 43.60 53.06 48.33 35.26 54.60 42.42 64.57 45.10 50.54 46.28 52.31 42.51 40.57 56.33 41.49 42.76 68.12 K jcn_only_AA CG3305,CREI_chr2L_21573959_21574786 chr2L + chr2L_21575114_21575966 chr2L_21575114_21575964 chr2L_21574787_21575113;chr2L_21575967_21576186 99.92 99.66 99.82 99.75 100.00 99.77 100.00 99.87 99.90 100.00 99.88 99.72 99.80 100.00 100.00 99.94 100.00 99.90 99.92 99.86 100.00 100.00 99.90 99.79 99.81 99.77 100.00 100.00 99.38 100.00 99.90 99.76 99.79 99.88 100.00 100.00 100.00 99.86 99.86 100.00 100.00 100.00 100.00 100.00 99.81 99.89 99.88 100.00 99.95 100.00 99.79 100.00 100.00 100.00 99.92 100.00 99.78 99.87 K alternative_donor I_chr3L_203620_207231,CG7028,I_chr3L_207277_208117 chr3L - chr3L_207277_208117 chr3L_207277_208089 chr3L_207232_207276;chr3L_208118_208217 96.91 96.00 94.44 97.50 100.00 100.00 100.00 98.00 97.44 87.50 100.00 97.14 100.00 95.24 100.00 97.30 100.00 100.00 95.83 94.23 92.31 NA 92.59 95.83 93.75 100.00 96.55 100.00 92.31 94.74 97.62 100.00 100.00 97.44 93.33 100.00 94.12 100.00 95.83 100.00 100.00 95.74 94.44 100.00 100.00 96.30 95.00 93.75 98.04 96.55 96.67 93.33 100.00 94.74 96.15 96.00 96.43 100.00 K jcn_only_AD CG31955,RI_chr2L_3712446_3712767 chr2L - chr2L_3712446_3712767 chr2L_3712446_3712497 chr2L_3712346_3712445;chr2L_3712768_3712862 86.80 78.64 87.39 91.30 91.55 89.42 92.56 88.27 86.34 80.30 93.75 88.96 84.29 89.92 88.50 93.98 89.19 90.00 87.06 86.80 87.50 96.43 71.53 76.82 70.59 86.96 91.14 90.91 83.33 82.93 84.69 81.94 92.31 93.75 85.71 89.74 73.23 72.12 75.18 84.50 86.79 90.57 84.71 66.11 80.37 88.42 83.06 87.50 88.95 71.52 80.49 80.51 77.92 79.50 88.46 68.79 78.54 90.74 K alternative_acceptor flfl,EI_chr3R_9513221_9513291,CG14367 chr3R + chr3R_9515908_9515995 chr3R_9515908_9515974 chr3R_9515635_9515907;chr3R_9515996_9516108 76.12 78.05 84.85 55.10 76.67 87.50 63.27 60.61 76.04 77.14 83.33 76.27 83.33 76.67 72.97 73.08 87.50 73.33 71.79 74.32 85.00 86.11 78.38 75.86 73.81 87.50 66.67 58.06 72.00 89.66 76.67 70.59 72.34 77.36 80.56 64.10 74.24 71.43 80.77 76.12 66.67 73.33 91.67 72.09 80.95 77.42 73.53 75.00 76.39 73.17 71.11 71.74 79.31 72.73 84.62 82.14 85.19 77.78 K jcn_only_AA CG16953,Sep2,RI_chr3R_16413718_16413845 chr3R - chr3R_16413180_16413845 chr3R_16413718_16413845 chr3R_16413846_16413945;chr3R_16413080_16413179 0.26 0.77 0.00 0.24 0.34 0.00 0.26 0.26 0.13 0.00 0.00 0.18 1.35 0.00 0.91 0.28 0.00 1.23 0.69 0.32 0.00 1.65 0.00 0.57 0.58 0.32 0.00 0.00 0.48 0.63 0.36 1.01 0.64 0.49 0.28 0.77 0.00 0.50 0.14 0.22 0.31 0.40 0.41 0.00 0.00 0.00 0.47 0.85 0.21 0.00 0.00 0.00 0.25 0.00 0.70 0.00 0.26 0.28 K intron_retention CG8683,F_chr2L_8122506_8122708 chr2L - chr2L_8123436_8123691 chr2L_8123435_8123436;chr2L_8123691_8123692 chr2L_8123304_8123435;chr2L_8123692_8124002 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG34183,CG5924 chr2L - chr2L_9890323_9890385 chr2L_9890322_9890323;chr2L_9890385_9890386 chr2L_9890028_9890322;chr2L_9890386_9890483 0.00 0.00 0.00 0.00 NA NA 2.38 0.00 3.45 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 NA 3.45 0.00 0.00 0.00 0.00 NA 0.00 9.09 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 8.33 NA 0.00 5.56 0.00 0.00 0.00 5.13 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention gish chr3R + chr3R_12100608_12100675 chr3R_12100607_12100608;chr3R_12100675_12100676 chr3R_12100309_12100607;chr3R_12100676_12100891 98.85 99.14 99.19 99.31 98.68 98.96 98.68 97.70 98.27 100.00 100.00 97.47 98.82 100.00 97.58 97.01 100.00 98.90 98.98 99.49 100.00 100.00 100.00 99.27 99.07 99.01 99.34 98.57 99.10 96.72 98.44 98.65 98.09 98.70 98.35 100.00 97.95 100.00 100.00 98.86 99.24 98.97 98.70 98.37 98.41 99.08 98.85 97.02 99.39 98.73 98.29 97.50 98.25 98.44 99.21 98.73 98.51 96.04 K intron_retention cv-c,RI_chr3R_10258928_10265129,RI_chr3R_10301040_10306363,RI_chr3R_10306635_10307255 chr3R - chr3R_10235288_10235538 chr3R_10235287_10235288;chr3R_10235538_10235539 chr3R_10234402_10235287;chr3R_10235539_10236209 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 2.27 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention sqd,I_chr3R_9462248_9471474,I_chr3R_9468150_9468236,I_chr3R_9470417_9471474 chr3R - chr3R_9462027_9462087 chr3R_9462026_9462027;chr3R_9462087_9462088 chr3R_9460612_9462026;chr3R_9462088_9462247 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 5.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG2076 chrX + chrX_10985891_10985953 chrX_10985890_10985891;chrX_10985953_10985954 chrX_10985758_10985890;chrX_10985954_10986134 0.52 0.70 0.78 1.30 0.00 0.00 1.35 0.00 0.67 0.74 0.00 0.41 0.00 1.08 0.00 0.66 0.62 0.00 0.52 0.58 0.78 0.00 0.00 0.55 0.30 0.00 1.18 3.23 0.76 0.94 1.38 0.00 0.00 0.68 0.50 0.32 0.00 0.70 0.58 1.31 0.00 0.49 0.61 0.40 0.00 0.00 0.40 0.00 0.53 0.57 0.51 0.63 0.37 0.73 0.00 0.93 0.77 0.00 K jcn_only_AD fs(1)h,I_chrX_7938425_7938871,I_chrX_7938425_7938878,I_chrX_7938449_7944184,I_chrX_7950171_7952371,I_chrX_7954192_7955240 chrX - chrX_7938425_7938878;chrX_7938425_7938871 chrX_7938425_7944184 chrX_7938366_7938424;chrX_7944185_7944284 98.13 100.00 97.62 95.45 100.00 100.00 98.15 100.00 99.02 95.00 93.75 99.01 96.88 93.94 96.55 93.10 100.00 86.67 100.00 97.85 96.88 95.89 100.00 98.92 96.08 100.00 98.48 97.40 100.00 91.25 93.18 93.94 97.46 95.65 98.59 98.86 97.47 100.00 96.63 98.04 98.33 98.13 100.00 98.31 98.33 96.43 98.48 99.14 99.05 98.39 100.00 95.83 96.49 96.88 97.06 100.00 93.94 100.00 K intron_retention eIF-4E,RI_chr3L_9394054_9394756,I_chr3L_9394308_9394756,RI_chr3L_9394468_9394631,I_chr3L_9394468_9394659,I_chr3L_9394468_9395155,I_chr3L_9394468_9395240,I_chr3L_9394468_9395446,I_chr3L_9394685_9394756,RI_chr3L_9394707_9395016,RI_chr3L_9394707_9395198,I_chr3L_9394707_9395309,I_chr3L_9394819_9394884,I_chr3L_9394819_9395016,I_chr3L_9394819_9395198,I_chr3L_9394819_9395379 chr3L - chr3L_9394468_9394631 chr3L_9394467_9394468;chr3L_9394631_9394632 chr3L_9394368_9394467;chr3L_9394632_9394677 97.44 98.00 98.08 95.88 100.00 97.06 96.67 98.68 98.40 100.00 89.29 96.64 100.00 97.96 95.45 96.20 97.56 94.12 100.00 96.08 94.29 95.83 95.77 97.92 100.00 95.45 98.61 97.96 98.00 98.21 97.73 97.67 89.13 98.73 97.30 95.00 98.48 100.00 100.00 98.65 90.48 96.70 97.22 98.25 94.44 91.89 98.08 96.49 96.04 98.28 96.83 97.78 97.62 97.44 90.38 95.08 95.59 95.35 K alternative_donor RpS8,REI_chr3R_25687741_25687920,I_chr3R_25687817_25687920,F_chr3R_25696884_25696960 chr3R + chr3R_25687657_25687920 chr3R_25687741_25687920 chr3R_25687921_25688020;chr3R_25687646_25687656 0.26 0.26 0.14 0.08 0.03 0.05 0.09 0.12 0.09 0.11 0.07 0.05 0.06 0.15 0.06 0.26 0.08 0.13 0.14 0.14 0.14 0.36 0.55 0.87 0.41 0.05 0.25 0.49 1.63 0.51 1.00 0.39 0.30 0.09 0.57 0.71 0.13 0.44 0.44 0.60 0.24 0.06 0.16 0.38 0.18 0.62 0.46 0.67 0.08 0.37 1.23 0.35 0.46 0.62 0.07 0.50 0.26 0.65 K jcn_only_AD CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3071308_3073080;chr3L_3071190_3073080 chr3L_3071298_3073080 chr3L_3073081_3073149;chr3L_3071183_3071189 3.57 NA NA NA NA NA NA 15.38 NA NA NA 0.00 NA NA NA 5.41 NA NA NA 2.56 NA NA NA NA NA NA NA NA NA NA NA NA NA 3.57 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA K intron_retention CG9143 chr2R - chr2R_16163910_16163971 chr2R_16163909_16163910;chr2R_16163971_16163972 chr2R_16163491_16163909;chr2R_16163972_16164155 0.00 0.00 0.00 2.86 0.00 0.00 5.71 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563098_563194 chr3R_563101_563194 chr3R_563195_563460;chr3R_563036_563097 96.88 97.87 97.67 95.06 97.14 97.73 95.00 97.67 96.72 100.00 87.50 97.50 97.92 97.83 91.67 92.23 96.88 96.67 97.06 96.15 97.14 93.59 95.08 95.45 96.88 95.24 91.84 92.11 97.67 92.00 98.41 97.50 100.00 95.96 97.62 97.67 93.33 100.00 97.14 98.67 94.59 94.94 97.44 97.26 96.00 95.24 95.35 96.83 96.26 100.00 95.71 97.22 96.55 96.30 98.39 94.87 98.00 98.59 K intron_retention Ptp10D,CEF_chrX_11516219_11517862,I_chrX_11516225_11516345 chrX + chrX_11567495_11569363 chrX_11567494_11567495;chrX_11569363_11569364 chrX_11567366_11567494;chrX_11569364_11569672 25.84 NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA 41.67 NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 26.67 NA NA NA NA NA NA NA NA NA NA K alternative_donor CG4293,RI_chrX_423385_423664,I_chrX_423385_423676 chrX - chrX_423385_423664;chrX_423385_423676 chrX_423385_423442 chrX_423285_423384;chrX_423677_423764 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 91.67 100.00 100.00 93.75 100.00 100.00 100.00 90.00 90.00 100.00 100.00 100.00 90.91 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 K intron_retention CG3609,RI_chr2L_2373723_2374295 chr2L - chr2L_2373077_2373133 chr2L_2373076_2373077;chr2L_2373133_2373134 chr2L_2372830_2373076;chr2L_2373134_2373425 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 1.97 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Sap30 chrX + chrX_16682376_16682599 chrX_16682376_16682572 chrX_16681789_16682375;chrX_16682600_16683675 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N multi_cassette CG1161,RI_chr3R_1181273_1181459,I_chr3R_1182079_1182146 chr3R + chr3R_1181273_1182146 chr3R_1181273_1181555;chr3R_1181665_1181724;chr3R_1181851_1181905;chr3R_1181959_1182146 chr3R_1181556_1181664;chr3R_1181725_1181850;chr3R_1181906_1181958 chr3R_1181173_1181272;chr3R_1182147_1182246 100.00 100.00 100.00 100.00 100.00 100.00 86.67 100.00 92.19 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.37 100.00 90.00 85.25 87.10 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 67.95 100.00 100.00 100.00 100.00 100.00 100.00 89.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 86.27 100.00 100.00 100.00 100.00 100.00 K cassette CG2201 chr2L - chr2L_21615677_21617279 chr2L_21615677_21616181;chr2L_21616574_21617279 chr2L_21616182_21616573 chr2L_21615608_21615676;chr2L_21617280_21617432 97.78 100.00 98.00 96.25 100.00 97.37 98.21 96.15 98.13 95.83 100.00 97.53 91.67 100.00 100.00 98.70 100.00 97.37 98.28 96.81 97.50 100.00 98.36 94.44 96.67 97.22 97.87 95.45 97.22 100.00 96.83 97.44 100.00 96.81 97.62 92.31 100.00 97.56 97.56 95.60 97.67 97.78 100.00 98.59 100.00 98.46 97.73 98.55 95.79 97.78 95.59 97.56 100.00 100.00 98.39 100.00 100.00 96.88 N alternative_last_exon mmd chrX - chrX_15852624_15856018;chrX_15854946_15856018 chrX_15848478_15856018 chrX_15852351_15852623;chrX_15854840_15854945 chrX_15848319_15848477 chrX_15856019_15856024 33.33 33.33 44.44 29.41 50.00 58.33 15.38 25.00 20.00 NA NA 46.15 35.71 41.67 60.00 13.33 36.36 9.09 26.67 26.92 28.57 NA NA NA NA 50.00 NA NA NA NA 55.56 NA NA 23.08 NA NA NA NA NA NA NA 25.00 33.33 NA NA NA NA NA 61.11 NA NA NA NA NA 46.15 NA NA NA K intron_retention CG8451 chr2L - chr2L_8202176_8202231 chr2L_8202175_8202176;chr2L_8202231_8202232 chr2L_8201811_8202175;chr2L_8202232_8202299 0.00 4.35 2.38 1.27 0.00 0.00 6.90 6.06 2.86 4.35 0.00 3.70 0.00 0.00 0.00 2.04 0.00 0.00 0.00 3.61 0.00 5.26 0.00 2.70 0.00 0.00 5.66 16.67 0.00 0.00 6.38 14.29 0.00 0.00 0.00 0.00 2.17 0.00 0.00 5.26 0.00 3.39 0.00 0.00 0.00 3.85 4.76 6.67 3.03 0.00 5.56 0.00 NA 0.00 2.17 0.00 7.32 0.00 K intron_retention CG1815,I_chr3R_27501104_27501176 chr3R + chr3R_27497948_27499178 chr3R_27497947_27497948;chr3R_27499178_27499179 chr3R_27497866_27497947;chr3R_27499179_27499359 2.45 0.00 7.69 7.69 0.00 NA 15.79 0.00 4.88 0.00 NA 13.79 0.00 0.00 0.00 0.00 14.29 0.00 5.56 3.23 0.00 7.41 8.57 0.00 11.11 4.35 4.76 12.50 10.00 5.41 0.00 NA 8.33 0.00 0.00 15.00 3.45 0.00 0.00 6.00 0.00 0.00 5.00 0.00 NA 12.50 0.00 2.33 0.00 10.53 2.56 0.00 0.00 NA 8.33 NA NA 0.00 K cassette Flo,I_chr2R_11456012_11456623 chr2R - chr2R_11455219_11455656 chr2R_11455219_11455333;chr2R_11455346_11455656 chr2R_11455334_11455345 chr2R_11455125_11455218;chr2R_11455657_11455749 5.10 8.77 7.81 9.23 7.69 5.56 1.54 7.14 5.05 1.45 2.13 2.73 4.35 6.25 6.49 3.80 0.00 8.93 5.17 7.63 6.12 11.82 4.20 5.38 5.00 3.85 6.67 3.33 2.27 4.94 5.63 5.10 4.51 7.41 5.06 2.80 5.19 2.56 6.38 5.13 2.80 6.56 6.67 7.59 3.05 3.75 5.62 2.72 5.10 2.78 4.08 9.09 4.65 6.12 7.81 7.89 3.65 1.53 K intron_retention CG5174,F_chr2R_14309059_14311473 chr2R + chr2R_14312172_14312376 chr2R_14312171_14312172;chr2R_14312376_14312377 chr2R_14312112_14312171;chr2R_14312377_14312539 4.71 7.79 2.35 4.90 1.32 3.39 8.47 7.77 3.90 0.00 6.67 7.59 9.43 6.56 6.33 5.15 4.44 11.76 3.57 4.29 2.44 19.05 11.27 8.05 10.87 4.17 5.13 7.69 2.90 3.57 3.30 3.70 2.47 6.54 5.56 8.33 2.15 0.00 6.38 4.71 11.43 4.03 0.00 3.28 2.22 4.00 5.36 8.77 4.63 3.37 5.63 3.45 0.00 0.00 4.76 4.23 6.06 10.53 K jcn_only_AA CG7849 chr2R + chr2R_1964611_1964665 chr2R_1964611_1964654 chr2R_1964481_1964610;chr2R_1964666_1964878 0.00 4.55 3.03 0.00 0.00 3.45 2.63 2.04 4.55 NA NA 0.00 NA 0.00 NA 0.00 NA 0.00 4.55 0.00 0.00 NA 4.00 0.00 0.00 0.00 NA 0.00 NA NA 16.67 NA NA 0.00 NA NA NA NA 4.76 0.00 NA 0.00 0.00 NA 3.85 4.35 4.55 NA 0.00 0.00 3.03 NA NA NA 0.00 6.06 2.94 4.17 K jcn_only_AD l(2)tid chr2R + chr2R_19595998_19596152 chr2R_19596011_19596152 chr2R_19596153_19596758;chr2R_19594625_19595997 75.00 74.49 73.61 77.42 82.69 65.00 69.39 53.57 75.36 72.13 82.81 76.42 88.10 77.50 77.94 67.31 76.74 69.01 67.19 73.98 73.02 77.42 67.24 72.41 81.25 76.92 75.36 79.27 75.40 80.65 69.05 65.66 74.86 75.00 77.42 76.19 69.89 69.89 73.73 86.15 78.23 74.65 86.96 75.23 66.47 78.68 75.69 75.00 70.87 80.00 72.63 67.86 70.83 69.88 75.00 78.86 70.77 60.26 K jcn_only_AA Mnt chrX + chrX_3587966_3592777;chrX_3587966_3592372;chrX_3587966_3592150 chrX_3587966_3592774 chrX_3587244_3587965;chrX_3592778_3593060 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 NA 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 K intron_retention gish chr3R + chr3R_12100598_12100709 chr3R_12100597_12100598;chr3R_12100709_12100710 chr3R_12100535_12100597;chr3R_12100710_12100891 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.38 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.47 100.00 100.00 98.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.04 100.00 98.55 100.00 100.00 100.00 98.94 K intron_retention l(1)G0289,I_chrX_10254197_10259575 chrX - chrX_10252538_10252595 chrX_10252537_10252538;chrX_10252595_10252596 chrX_10252119_10252537;chrX_10252596_10252668 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette M(2)21AB,I_chr2L_110878_111037,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_110878_112689 chr2L_110878_111004;chr2L_111118_111906;chr2L_112020_112689 chr2L_111005_111117;chr2L_111907_112019 chr2L_110778_110877;chr2L_112690_112789 29.73 41.03 14.29 24.00 17.14 26.67 10.67 35.19 16.28 17.50 43.48 36.00 36.96 35.48 22.22 13.16 29.73 44.00 30.00 19.61 68.18 15.25 31.91 38.98 16.67 34.38 20.37 7.41 7.84 24.39 48.44 39.29 19.05 29.79 34.48 25.71 12.50 33.33 11.76 21.33 51.43 23.88 29.17 21.13 22.45 53.33 26.67 45.61 37.14 42.55 24.64 28.21 46.15 35.29 42.37 32.65 53.85 70.00 K alternative_donor Nedd8 chr2L - chr2L_18951347_18951416 chr2L_18951347_18951406 chr2L_18951280_18951346;chr2L_18951417_18951482 100.00 97.92 100.00 100.00 100.00 100.00 98.67 98.46 98.81 100.00 100.00 98.67 100.00 97.37 100.00 100.00 97.50 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 100.00 98.44 100.00 100.00 96.88 97.22 97.87 98.59 100.00 97.73 100.00 100.00 97.78 100.00 100.00 97.73 97.92 100.00 98.65 98.80 K intron_retention CG6230,I_chr2L_11117087_11117165 chr2L - chr2L_11116455_11116508 chr2L_11116454_11116455;chr2L_11116508_11116509 chr2L_11116311_11116454;chr2L_11116509_11116641 0.00 0.00 0.00 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 20.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ulp1 chrX - chrX_19098025_19098096 chrX_19098024_19098025;chrX_19098096_19098097 chrX_19097860_19098024;chrX_19098097_19098969 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG10880,CG15386_CG42371 chr2L - chr2L_2215457_2215514;chr2L_2215460_2215514 chr2L_2215454_2215514 chr2L_2215515_2216288;chr2L_2215021_2215453 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA 16.67 0.00 NA NA NA 0.00 0.00 NA 12.50 NA NA NA NA NA NA NA NA NA 0.00 K intron_retention faf,RI_chr3R_27603474_27603893,E_chr3R_27613964_27614381,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27613920_27615218 chr3R_27613919_27613920;chr3R_27615218_27615219 chr3R_27613864_27613919;chr3R_27615219_27615732 11.43 9.30 10.98 14.02 9.38 8.62 18.69 8.62 8.99 22.03 8.93 20.00 16.92 13.16 16.25 8.80 8.57 13.51 16.22 15.90 9.86 10.81 10.34 10.71 12.28 13.24 14.29 17.57 15.97 10.78 13.54 12.64 10.87 10.57 5.88 23.94 8.03 8.14 12.38 8.33 13.68 10.46 9.26 8.66 17.00 12.00 13.64 14.65 14.40 10.99 11.43 9.72 4.62 12.16 10.87 12.00 9.30 14.95 K intron_retention I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_927771_929704,CG32021,RI_chr4_928193_928245,I_chr4_928482_929704,noncoding_20815,I_chr4_929811_932812 chr4 - chr4_928482_929704 chr4_928481_928482;chr4_929704_929705 chr4_928382_928481;chr4_929705_929804 98.55 100.00 100.00 95.35 100.00 100.00 98.17 100.00 98.55 100.00 96.43 98.48 100.00 96.97 97.73 96.43 100.00 100.00 97.83 98.53 96.55 98.70 93.94 98.15 100.00 100.00 100.00 100.00 98.08 100.00 90.91 100.00 100.00 98.11 100.00 100.00 97.78 100.00 100.00 98.55 96.97 95.95 100.00 97.22 95.65 100.00 96.43 98.51 98.18 97.78 98.44 100.00 100.00 100.00 100.00 96.55 96.97 96.15 K alternative_donor CG12079,CG14964 chr3L - chr3L_3159216_3159273 chr3L_3159216_3159269 chr3L_3158485_3159215;chr3L_3159274_3159348 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.70 1.04 0.00 0.98 0.00 0.00 0.70 0.00 0.00 0.48 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.60 0.00 0.62 0.00 0.58 0.00 0.00 0.61 0.00 0.68 0.00 0.00 N jcn_only_AA CG11897 chr3R + chr3R_24989884_24989968 chr3R_24989884_24989946 chr3R_24989616_24989883;chr3R_24989969_24990652 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.05 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG10959,I_chrX_8043524_8043577,I_chrX_8043625_8043682 chrX + chrX_8043510_8043583 chrX_8043510_8043577 chrX_8043424_8043509;chrX_8043584_8043624 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA 87.50 NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA 92.86 K jcn_only_AD CG6133,Tip60 chrX - chrX_4009248_4009352 chrX_4009248_4009329 chrX_4009035_4009247;chrX_4009353_4010577 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 NA 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 2.56 4.41 0.00 0.00 0.00 0.00 2.38 2.44 0.00 0.00 1.85 0.00 0.00 0.00 0.00 1.49 1.54 1.14 K jcn_only_AD CG17683,I_chr2R_18774_18869 chr2R + chr2R_18748_18826 chr2R_18774_18826 chr2R_18827_18997;chr2R_18711_18747 70.27 NA NA 57.89 NA NA 66.67 70.27 75.00 NA NA 65.52 76.92 NA NA 60.00 NA NA NA 69.23 NA NA NA NA NA NA NA NA NA NA NA NA NA 62.07 71.43 NA NA NA NA NA NA 74.07 NA 81.82 NA NA 85.00 NA 63.89 NA NA NA NA NA NA NA NA 85.00 K intron_retention mRpL22 chrX + chrX_16678378_16678450 chrX_16678377_16678378;chrX_16678450_16678451 chrX_16677983_16678377;chrX_16678451_16678664 1.94 0.97 0.00 5.63 2.13 1.90 2.14 3.18 1.93 0.00 2.08 0.00 1.47 4.21 0.00 1.84 1.09 0.00 0.00 2.86 2.17 4.35 0.00 0.00 5.00 2.04 6.98 8.06 7.50 4.76 3.52 2.97 3.57 3.55 1.83 7.22 4.38 1.94 1.36 1.53 3.88 1.79 4.00 3.28 2.22 1.53 0.74 0.76 3.53 3.15 1.40 0.00 1.15 1.69 1.37 0.00 1.20 3.37 K intron_retention Sec16,I_chrX_12501913_12502010,I_chrX_12502899_12502973 chrX + chrX_12502562_12502656 chrX_12502561_12502562;chrX_12502656_12502657 chrX_12502032_12502561;chrX_12502657_12502898 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_150069_150180 chr4_150068_150069;chr4_150180_150181 chr4_149969_150068;chr4_150181_150232 32.66 NA NA 36.36 NA NA 33.33 NA 32.00 NA NA NA NA NA NA 46.15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA K intron_retention tai,I_chr2L_9191814_9206231 chr2L + chr2L_9243546_9243611 chr2L_9243545_9243546;chr2L_9243611_9243612 chr2L_9243235_9243545;chr2L_9243612_9243900 0.88 0.00 0.00 1.32 1.18 1.11 0.81 1.69 2.86 0.00 1.35 0.00 0.00 0.00 0.95 1.12 0.00 0.79 0.00 0.80 0.00 0.83 2.99 0.00 3.03 0.92 5.80 17.46 3.90 0.54 2.56 0.00 1.30 0.69 0.00 2.17 1.46 0.00 2.78 0.44 0.88 2.80 0.00 1.95 0.00 0.00 0.00 1.42 1.86 2.15 0.69 2.90 0.00 5.41 1.80 2.22 0.00 0.00 K intron_retention WASp,I_chr3R_24656400_24656715,I_chr3R_24656400_24656880,I_chr3R_24656400_24657416 chr3R - chr3R_24656400_24657539 chr3R_24656399_24656400;chr3R_24657539_24657540 chr3R_24656300_24656399;chr3R_24657540_24657982 6.96 9.09 6.56 10.64 8.70 4.84 14.71 8.54 8.06 4.44 14.00 9.90 9.09 4.17 4.11 8.82 10.64 8.77 9.23 8.57 10.87 12.50 3.03 4.94 15.38 3.39 13.79 12.24 7.50 4.00 8.86 7.27 6.96 5.94 3.77 16.90 6.15 5.08 6.49 6.62 9.84 6.96 3.39 3.45 6.67 6.67 1.72 9.17 10.48 6.38 4.82 10.00 1.92 4.44 5.48 6.12 2.33 6.31 K alternative_donor MSBP,I_chrX_15783766_15784027,RI_chrX_15783766_15784064,I_chrX_15783766_15785978 chrX - chrX_15783766_15784064;chrX_15783766_15783941 chrX_15783766_15784027 chrX_15783666_15783765;chrX_15784065_15784071 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.83 0.57 0.00 1.96 0.83 0.00 0.00 0.00 0.81 2.74 1.85 0.00 0.00 0.00 0.00 0.00 2.17 2.44 0.00 1.41 0.00 1.79 1.69 0.00 2.63 7.69 0.00 0.00 0.00 1.69 2.94 0.00 1.69 2.44 0.85 1.72 0.00 0.00 1.27 1.41 1.92 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Sans,RI_chr2R_8825985_8826072,I_chr2R_8826501_8826591 chr2R + chr2R_8825981_8826072 chr2R_8825985_8826072 chr2R_8826073_8826172;chr2R_8825905_8825980 3.57 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA ens,I_chr3L_4130719_4131120 chr3L - chr3L_4125061_4125135 chr3L_4125080_4125135 chr3L_4125136_4125500;chr3L_4124919_4125060 92.36 92.73 91.86 91.67 91.67 89.56 90.96 93.09 92.02 94.54 88.52 92.14 93.98 93.98 91.87 91.08 93.06 95.17 93.94 91.89 92.07 93.75 93.09 91.36 90.38 94.14 94.38 92.11 89.14 93.45 92.36 89.18 92.69 92.27 92.61 94.62 94.65 89.78 94.63 90.15 91.70 94.29 92.50 89.09 95.66 92.29 94.89 90.71 91.43 96.61 92.60 93.72 95.63 93.49 91.93 93.41 91.59 89.95 K intron_retention BEAF-32,I_chr2R_10658570_10659304,noncoding_6875 chr2R + chr2R_10658335_10658826 chr2R_10658334_10658335;chr2R_10658826_10658827 chr2R_10657939_10658334;chr2R_10658827_10658842 90.91 90.00 100.00 75.00 NA 90.00 75.00 NA 82.61 NA 87.50 88.24 77.78 100.00 93.33 82.61 88.89 90.91 90.00 84.62 87.50 88.89 77.78 91.67 NA NA 100.00 NA 100.00 90.91 73.33 100.00 91.30 90.91 100.00 90.00 100.00 NA 92.86 100.00 88.89 75.00 100.00 90.00 96.77 94.12 93.75 91.30 94.74 92.86 90.91 NA 92.86 92.86 86.67 84.62 69.23 97.73 K jcn_only_AD RhoGAPp190,I_chrX_17544272_17544863,I_chrX_17546225_17546531 chrX - chrX_17536864_17537055 chrX_17536864_17537046 chrX_17536811_17536863;chrX_17537056_17537280 97.22 97.22 93.62 100.00 100.00 97.22 97.50 94.74 98.68 100.00 97.06 98.59 100.00 96.88 97.44 100.00 95.65 96.55 100.00 96.39 100.00 96.08 98.15 97.73 NA 100.00 96.00 95.00 97.06 100.00 100.00 100.00 96.55 93.75 96.43 100.00 100.00 100.00 100.00 92.68 97.67 96.05 97.06 97.37 96.00 97.30 93.55 95.31 98.65 100.00 95.74 96.88 91.67 93.10 100.00 91.30 NA 95.24 K intron_retention KdelR,CG5188 chr2L + chr2L_10427004_10427052 chr2L_10427003_10427004;chr2L_10427052_10427053 chr2L_10426867_10427003;chr2L_10427053_10428159 80.47 NA NA 92.31 NA NA 71.43 90.91 77.78 NA NA 75.00 NA 63.64 69.23 75.00 88.89 87.50 NA 80.95 NA 88.89 NA 54.55 NA 88.89 83.78 70.83 100.00 NA 69.23 NA NA 100.00 70.00 NA 77.78 NA 80.00 NA NA 85.71 NA NA NA NA NA NA 88.24 87.50 NA NA 80.00 NA NA NA NA NA N intron_retention CG42490,noncoding_3620,I_chr2L_18665287_18666474,RI_chr2L_18666413_18666474,CREI_chr2L_18666629_18666680 chr2L + chr2L_18665915_18666474 chr2L_18665914_18665915;chr2L_18666474_18666475 chr2L_18665676_18665914;chr2L_18666475_18666511 47.15 50.00 60.00 NA NA NA 45.00 100.00 60.71 NA 100.00 36.36 100.00 100.00 100.00 53.85 43.75 36.36 NA 48.15 NA NA NA 33.33 NA NA 53.85 NA NA NA 37.04 NA NA 50.00 NA NA 43.75 NA 15.38 38.89 NA 41.67 NA NA NA 35.29 NA NA 60.87 NA NA NA NA 46.15 40.00 NA NA NA K intron_retention CG17660 chr2L - chr2L_1710104_1710207 chr2L_1710103_1710104;chr2L_1710207_1710208 chr2L_1710043_1710103;chr2L_1710208_1710415 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 2.92 0.00 0.00 0.00 0.00 0.00 4.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15652351_15654499 chrX_15652351_15654288;chrX_15654398_15654499 chrX_15654289_15654397 chrX_15652263_15652350;chrX_15654500_15654599 27.88 NA NA 17.65 NA NA NA 30.77 36.36 NA NA 25.00 NA NA NA 25.00 NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA K alternative_donor CG42360,RI_chr2R_20495045_20495115,RI_chr2R_20497443_20497538 chr2R + chr2R_20497443_20497538 chr2R_20497479_20497538 chr2R_20497539_20497638;chr2R_20497343_20497442 95.00 100.00 85.71 88.89 88.89 90.00 95.00 95.45 92.59 NA 100.00 87.50 100.00 100.00 100.00 94.12 86.67 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA 100.00 NA 92.31 NA 87.50 90.91 85.71 NA NA NA 100.00 92.31 88.89 95.00 88.89 100.00 NA 100.00 NA 85.71 95.65 100.00 100.00 100.00 NA NA 93.33 NA 100.00 87.50 K jcn_only_AA Tsp42Ee,RI_chr2R_2904593_2904783 chr2R + chr2R_2904593_2904783 chr2R_2904593_2904751 chr2R_2904518_2904592;chr2R_2904784_2904880 56.82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 63.64 NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Moe,I_chrX_8774434_8791759 chrX - chrX_8768435_8768544 chrX_8768434_8768435;chrX_8768544_8768545 chrX_8768222_8768434;chrX_8768545_8768932 4.42 4.74 3.52 3.41 5.14 4.26 5.07 2.55 3.80 4.33 4.66 3.01 5.82 4.84 2.87 6.62 5.21 4.19 4.58 3.38 3.20 3.82 5.17 4.92 3.35 3.66 7.48 5.56 6.06 4.86 4.72 4.29 1.94 3.55 2.88 3.00 7.02 4.90 5.27 3.19 3.51 3.64 3.10 5.58 2.87 4.79 4.87 3.94 3.95 5.43 4.68 4.98 3.81 4.85 4.42 5.35 4.56 4.35 K intron_retention CG9572 chrX + chrX_20045060_20048230 chrX_20045059_20045060;chrX_20048230_20048231 chrX_20044978_20045059;chrX_20048231_20048847 8.52 7.41 11.11 NA 5.88 11.11 13.04 NA 7.55 NA 0.00 6.25 15.00 5.26 8.70 NA 7.69 8.70 14.29 4.44 NA NA 9.09 6.67 NA NA 14.29 NA 12.50 NA 11.76 12.50 NA 8.33 NA NA 7.84 7.41 5.00 9.52 NA 11.43 0.00 5.26 0.00 NA 5.56 NA 8.82 9.68 15.00 NA 9.09 0.00 0.00 10.53 NA NA K alternative_donor Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3295176;chr2R_3294566_3294634;chr2R_3294566_3294636;chr2R_3294566_3294638;chr2R_3294566_3295280;chr2R_3294566_3294642;chr2R_3294566_3294714 chr2R_3294566_3295244 chr2R_3294491_3294565;chr2R_3295281_3295302 25.00 23.08 26.32 21.88 18.18 21.43 26.09 26.09 35.14 25.00 31.25 27.27 15.38 28.57 33.33 25.00 25.00 20.00 27.78 34.15 31.25 6.25 23.81 31.58 26.67 21.43 11.11 25.00 17.65 23.53 25.00 35.71 28.00 28.00 7.69 15.79 26.32 25.00 18.18 17.86 16.67 26.92 28.57 26.67 23.53 25.00 30.77 17.39 35.48 30.77 15.00 28.57 28.57 37.50 27.27 25.00 25.00 26.92 K jcn_only_AD Pif1A,RI_chr3R_4623769_4624181,I_chr3R_4623769_4626415,RI_chr3R_4623769_4626596,I_chr3R_4624232_4625183 chr3R - chr3R_4623769_4625183 chr3R_4623769_4624181 chr3R_4623669_4623768;chr3R_4625184_4625283 3.33 4.55 2.78 0.00 NA 0.00 5.41 5.71 2.00 NA NA 12.00 NA 7.50 7.14 2.38 6.45 10.71 3.23 7.50 NA 4.65 2.86 NA NA 0.00 6.90 NA 3.45 NA 2.22 NA NA 3.66 0.00 5.41 NA NA 0.00 2.94 0.00 5.26 3.70 NA NA 3.33 NA 7.14 2.33 NA 3.12 NA NA NA 0.00 NA NA 0.00 K alternative_acceptor CG17082,R_chr2R_642176_644740,RI_chr2R_644671_645068,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_644671_645068 chr2R_644671_644740 chr2R_644571_644670;chr2R_645069_645168 98.81 100.00 97.22 98.68 100.00 96.67 98.85 100.00 98.77 87.50 95.45 100.00 100.00 97.62 100.00 98.59 100.00 100.00 98.11 98.36 95.00 94.44 100.00 100.00 95.83 89.66 96.88 100.00 100.00 100.00 100.00 100.00 95.45 98.63 100.00 100.00 100.00 92.31 100.00 100.00 96.30 93.94 100.00 100.00 95.24 97.06 100.00 94.74 98.81 100.00 97.44 100.00 93.75 96.00 97.37 100.00 93.75 100.00 K intron_retention step,I_chr2L_21743972_21757163,RI_chr2L_21747333_21756553,EI_chr2L_21753427_21753664,CREI_chr2L_21753815_21756553 chr2L - chr2L_21747333_21753218 chr2L_21747332_21747333;chr2L_21753218_21753219 chr2L_21747233_21747332;chr2L_21753219_21753409 0.00 4.76 0.00 2.94 0.00 5.26 2.50 4.00 3.64 NA 0.00 0.00 6.25 0.00 0.00 3.57 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 4.44 0.00 0.00 NA 0.00 0.00 4.55 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 K jcn_only_AA CG14647 chr3R + chr3R_227208_227326 chr3R_227208_227322 chr3R_227076_227207;chr3R_227327_227739 100.00 100.00 98.73 100.00 100.00 100.00 98.90 99.04 100.00 100.00 100.00 100.00 100.00 100.00 98.46 100.00 100.00 100.00 98.36 98.18 100.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 100.00 100.00 98.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.77 100.00 100.00 100.00 100.00 100.00 98.78 100.00 100.00 98.23 100.00 100.00 100.00 100.00 100.00 98.73 100.00 100.00 100.00 K intron_retention CG31715,I_chr2L_10341933_10342155 chr2L + chr2L_10341766_10341821 chr2L_10341765_10341766;chr2L_10341821_10341822 chr2L_10341629_10341765;chr2L_10341822_10341932 0.00 0.00 0.00 2.06 4.35 0.00 1.52 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.29 0.00 0.00 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 5.00 0.00 N jcn_only_AA REG chrX + chrX_13106992_13107202 chrX_13106992_13107188 chrX_13106497_13106991;chrX_13107203_13108145 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.90 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG2017 chr3R - chr3R_1684307_1684364 chr3R_1684306_1684307;chr3R_1684364_1684365 chr3R_1683819_1684306;chr3R_1684365_1685050 0.00 0.00 0.00 6.06 0.00 0.00 0.00 2.70 0.00 0.00 0.00 7.81 0.00 0.00 3.57 0.00 0.00 0.00 5.88 0.00 0.00 2.53 1.27 1.37 5.26 0.00 8.64 8.26 0.00 0.00 0.00 0.00 4.44 3.33 0.00 0.00 1.04 0.00 0.00 0.00 3.51 2.00 0.00 0.00 0.00 4.35 1.67 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 2.70 0.00 K jcn_only_AD CG11658,I_chr3L_11704048_11704107 chr3L - chr3L_11700672_11701507;chr3L_11700672_11701491 chr3L_11700672_11701407 chr3L_11700405_11700671;chr3L_11701508_11701663 1.93 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.85 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD RhoGAPp190,I_chrX_17544272_17544863,I_chrX_17546225_17546531 chrX - chrX_17544272_17546531;chrX_17544272_17546421 chrX_17544272_17546123 chrX_17544172_17544271;chrX_17546532_17546535 24.32 27.59 20.59 23.64 28.57 20.00 21.54 35.29 22.73 8.00 24.32 35.37 13.79 14.81 26.53 24.32 22.22 27.59 35.00 15.79 26.67 22.22 37.50 NA NA 29.73 NA NA 12.50 31.25 25.53 NA 8.51 18.03 42.31 NA NA NA NA 25.76 NA 20.29 29.03 22.58 NA NA NA 12.00 27.78 NA 50.00 NA NA NA 35.71 NA NA 4.76 K intron_retention CG11266,RI_chr2L_7033019_7033182,RI_chr2L_7033019_7034180,RI_chr2L_7033019_7034764,I_chr2L_7034274_7034764,I_chr2L_7034274_7035406,RI_chr2L_7034911_7035074,I_chr2L_7051093_7051366 chr2L + chr2L_7033019_7033182 chr2L_7033018_7033019;chr2L_7033182_7033183 chr2L_7032919_7033018;chr2L_7033183_7033282 85.71 NA NA NA NA NA NA 93.75 85.71 NA NA 76.47 NA NA NA 88.89 NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 88.24 NA NA NA NA NA 35.71 NA 84.62 88.89 NA NA NA NA NA 91.67 NA NA NA NA NA 77.78 NA NA NA K intron_retention CG5174,F_chr2R_14309059_14311473,CE_chr2R_14309063_14311473 chr2R + chr2R_14309059_14311631 chr2R_14309058_14309059;chr2R_14311631_14311632 chr2R_14308963_14309058;chr2R_14311632_14311756 1.55 0.00 2.05 1.12 1.03 0.00 2.92 1.05 1.58 0.00 0.00 2.05 2.13 2.02 3.39 2.81 0.00 NA 2.78 1.84 4.17 1.61 1.95 2.55 2.86 1.72 2.13 4.55 2.25 2.70 1.38 0.00 0.00 2.13 1.96 1.96 1.49 1.52 1.18 1.61 0.00 0.94 0.00 0.00 0.91 0.59 0.00 3.45 1.38 0.00 2.62 2.70 0.00 0.00 3.60 0.00 0.61 0.00 K multi_cassette noncoding_24933,sw chrX - chrX_20101671_20105848 chrX_20101671_20103190;chrX_20103239_20104496;chrX_20104518_20105401;chrX_20105465_20105848 chrX_20103191_20103238;chrX_20104497_20104517;chrX_20105402_20105464 chrX_20101515_20101670;chrX_20105849_20105976 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD RpL28,RI_chr3L_3221710_3221877,I_chr3L_3221982_3222744,snoRNA:Or-CD11c chr3L - chr3L_3221982_3222787;chr3L_3221982_3222574;chr3L_3221982_3222926;chr3L_3221982_3222365;chr3L_3221982_3222847 chr3L_3221982_3222152 chr3L_3221882_3221981;chr3L_3222927_3222958 2.52 3.51 1.04 1.50 1.89 2.92 2.70 0.59 4.84 4.43 3.35 6.02 1.45 4.02 1.19 2.36 1.29 2.13 1.20 1.67 2.10 2.52 4.17 3.07 9.17 1.99 9.92 20.72 1.62 1.93 0.50 0.61 0.30 0.89 3.42 3.30 14.52 6.93 6.35 2.99 0.45 0.76 1.46 5.92 0.42 2.67 9.92 0.75 1.34 4.69 9.76 8.93 1.49 11.01 1.58 6.32 9.18 0.28 K intron_retention CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,RI_chr2L_126228_126309 chr2L - chr2L_118875_118930 chr2L_118874_118875;chr2L_118930_118931 chr2L_118806_118874;chr2L_118931_118999 1.62 0.79 2.19 0.54 1.11 0.00 3.62 1.86 2.27 0.00 1.23 2.87 1.55 0.00 3.23 3.70 3.77 3.26 2.35 2.08 2.61 0.00 3.05 0.00 0.00 0.98 4.04 6.34 3.70 2.82 3.15 1.47 3.30 1.99 3.68 4.43 3.65 0.00 0.00 1.80 0.54 1.29 4.21 0.55 0.00 1.62 1.35 0.59 2.26 1.69 0.00 0.00 0.00 0.00 1.89 0.00 1.49 1.16 K intron_retention I_chr3L_6946805_6946872,CG10075 chr3L - chr3L_6950385_6950451 chr3L_6950384_6950385;chr3L_6950451_6950452 chr3L_6950046_6950384;chr3L_6950452_6950540 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.66 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 K alternative_acceptor CG2604 chr3R - chr3R_1048869_1048971 chr3R_1048911_1048971 chr3R_1048972_1048994;chr3R_1047347_1048868 58.95 53.25 63.16 64.22 65.85 53.85 60.87 63.30 62.02 56.14 70.00 57.43 72.55 62.50 62.50 66.67 63.64 67.74 68.33 58.28 63.93 65.45 45.36 70.24 65.96 75.93 51.22 47.96 51.72 56.92 67.44 55.07 56.84 60.78 61.54 81.25 51.69 55.88 56.52 51.08 68.09 61.79 59.18 47.83 50.60 56.67 57.32 54.67 61.83 47.56 56.76 55.56 48.39 50.63 58.95 58.97 56.07 53.77 K jcn_only_AD CG12703 chrX + chrX_19645123_19645380;chrX_19645198_19645380;chrX_19645200_19645380;chrX_19645202_19645380;chrX_19644924_19645380 chrX_19645171_19645380 chrX_19645381_19645579;chrX_19644833_19644923 92.51 91.95 94.16 77.91 93.81 89.41 95.04 85.08 88.55 92.86 95.00 92.27 97.14 90.82 95.24 97.59 90.57 86.67 92.73 92.24 97.27 96.43 87.88 85.29 96.97 91.57 87.93 92.73 95.83 92.76 95.83 95.60 99.04 92.51 92.31 96.52 91.18 92.47 90.97 93.89 96.92 92.44 92.16 95.41 93.33 96.27 87.76 98.12 91.44 97.59 89.60 95.31 92.42 89.39 91.96 89.11 86.27 97.99 K jcn_only_AA CG32016,I_chr4_972691_972763,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_972691_972763;chr4_972719_972763 chr4_972704_972763 chr4_972764_972863;chr4_972619_972690 99.62 100.00 98.53 100.00 100.00 97.30 98.89 100.00 99.25 NA 96.15 99.09 100.00 96.77 98.18 98.10 100.00 100.00 100.00 98.55 98.15 100.00 100.00 98.70 100.00 100.00 97.44 91.67 100.00 97.83 97.06 100.00 100.00 97.76 100.00 97.62 98.08 100.00 96.92 100.00 100.00 99.15 97.14 100.00 100.00 96.36 97.67 100.00 99.15 98.81 98.51 100.00 100.00 100.00 100.00 100.00 98.67 100.00 K alternative_acceptor maf-S,CG11110 chr2R + chr2R_16528624_16528673;chr2R_16528624_16528670 chr2R_16528624_16528685 chr2R_16528563_16528623;chr2R_16528686_16529179 98.41 100.00 98.73 96.40 98.41 100.00 96.72 99.17 96.83 95.24 100.00 98.31 100.00 98.31 98.67 97.44 98.25 98.28 97.50 99.38 98.44 98.92 100.00 97.83 98.00 100.00 98.08 92.11 94.44 100.00 100.00 99.07 98.08 98.17 95.16 98.04 98.41 100.00 98.80 98.70 98.75 97.67 100.00 100.00 99.02 97.66 97.37 98.91 97.50 100.00 96.88 94.74 97.62 100.00 98.85 96.97 97.50 98.75 K intron_retention Start1,I_chr2R_20463661_20463716 chr2R + chr2R_20464823_20464888 chr2R_20464822_20464823;chr2R_20464888_20464889 chr2R_20464699_20464822;chr2R_20464889_20465114 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 K intron_retention CG4896,REI_chr2L_1179197_1179859,I_chr2L_1191535_1191648 chr2L + chr2L_1177869_1177947 chr2L_1177868_1177869;chr2L_1177947_1177948 chr2L_1177753_1177868;chr2L_1177948_1178044 65.16 NA NA NA NA NA NA 57.14 NA NA NA NA NA NA NA NA NA NA NA 63.64 NA NA 75.00 NA NA NA 73.33 NA NA NA 53.33 NA NA 66.67 NA 90.00 NA NA 66.67 63.64 NA 66.67 NA NA NA NA NA 53.33 69.23 NA 54.55 NA NA NA NA NA NA 41.67 K alternative_acceptor CG11880,I_chr3R_24949827_24951052,CE_chr3R_24962426_24962797 chr3R + chr3R_24949827_24951052;chr3R_24949827_24951126 chr3R_24949827_24951129 chr3R_24949727_24949826;chr3R_24951130_24951152 10.14 2.56 17.78 8.97 11.36 7.50 7.81 10.14 6.02 10.20 14.29 10.45 6.06 18.75 9.43 12.12 7.69 15.00 9.30 10.34 8.57 6.14 13.73 16.67 18.18 12.70 9.26 13.85 7.07 7.84 10.84 8.93 14.05 6.45 6.25 13.21 5.48 8.70 4.44 9.80 11.29 10.47 0.00 9.59 14.29 6.06 13.16 10.47 8.43 8.70 15.22 17.14 5.26 0.00 12.70 14.81 12.90 16.42 K cassette Nipped-B,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_615630_615937 chr2R_615630_615684;chr2R_615857_615937 chr2R_615685_615856 chr2R_615514_615629;chr2R_615938_615993 99.07 100.00 97.92 91.18 100.00 100.00 97.79 99.01 99.26 100.00 100.00 98.04 100.00 98.04 98.28 98.98 100.00 100.00 100.00 98.89 100.00 100.00 98.44 100.00 97.50 92.59 97.18 94.12 85.71 100.00 98.77 93.75 100.00 99.07 100.00 97.92 98.15 100.00 100.00 98.41 92.86 98.99 97.67 98.46 100.00 100.00 100.00 95.24 100.00 100.00 98.51 97.78 100.00 90.00 100.00 100.00 100.00 100.00 N jcn_only_AA CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789733_9789790;chr2L_9789740_9789790;chr2L_9789694_9789790;chr2L_9789718_9789790;chr2L_9789598_9789790 chr2L_9789751_9789790 chr2L_9789791_9789832;chr2L_9789594_9789597 0.00 8.18 4.94 6.19 0.00 0.00 8.44 3.99 4.79 0.00 0.00 0.00 11.50 0.00 0.00 0.00 0.00 0.00 6.29 6.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.34 0.00 0.00 3.94 0.00 0.00 8.33 0.00 0.00 6.25 0.00 7.32 0.00 0.00 0.00 0.00 0.00 5.15 3.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG6695 chr3R + chr3R_20483291_20484042;chr3R_20483332_20484042 chr3R_20483336_20484042 chr3R_20484043_20484133;chr3R_20483238_20483290 21.05 16.67 17.65 11.11 18.75 26.67 15.00 25.00 19.51 21.43 22.22 24.14 15.38 26.67 25.00 26.67 23.08 22.22 23.08 15.38 20.00 23.08 8.57 25.00 21.43 23.08 17.39 33.33 15.00 21.05 33.33 20.83 12.20 12.00 15.00 19.05 12.20 9.09 22.86 27.78 24.24 24.39 16.67 24.24 21.88 26.47 19.05 33.33 20.00 17.14 19.23 23.81 13.79 20.00 10.53 18.75 22.58 23.33 K alternative_donor CG31460,I_chr3R_4388607_4388664 chr3R + chr3R_4388607_4388664 chr3R_4388609_4388664 chr3R_4388665_4388756;chr3R_4388554_4388606 100.00 90.00 100.00 100.00 94.74 86.67 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 94.74 100.00 92.86 100.00 100.00 100.00 NA NA NA NA 96.00 NA 100.00 100.00 NA 100.00 91.67 100.00 95.24 NA NA NA NA NA 97.44 95.24 96.77 100.00 90.00 100.00 95.24 NA 96.43 100.00 NA NA NA 100.00 NA 94.74 NA NA 96.88 K intron_retention Tsp42Ea,CG30159 chr2R + chr2R_2880283_2881877 chr2R_2880282_2880283;chr2R_2881877_2881878 chr2R_2880260_2880282;chr2R_2881878_2881989 7.14 6.98 0.00 6.33 10.00 5.71 6.85 8.33 3.31 16.13 8.33 4.23 0.00 4.08 7.14 6.67 7.94 7.14 4.17 6.94 17.65 2.82 4.88 7.14 5.00 4.44 10.94 31.19 17.31 10.64 7.92 14.29 17.54 2.67 2.00 9.30 8.06 11.76 14.81 7.78 4.17 4.30 4.55 8.00 8.33 8.33 2.86 17.50 7.61 8.22 6.56 11.76 5.13 4.35 4.05 6.25 3.17 10.34 K alternative_donor Nop60B,AT25722,F_chr2R_20073291_20073744,snoRNA:Or-CD9b,snmRNA:60Cb chr2R + chr2R_20073291_20073744 chr2R_20073545_20073744 chr2R_20073745_20073751;chr2R_20073238_20073290 100.00 NA NA 100.00 NA NA 100.00 88.89 100.00 NA NA 90.91 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 90.91 NA NA 100.00 100.00 NA 100.00 100.00 NA NA NA NA 100.00 100.00 88.89 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG42348,I_chr3L_20149990_20151579 chr3L - chr3L_20148760_20148832 chr3L_20148759_20148760;chr3L_20148832_20148833 chr3L_20148638_20148759;chr3L_20148833_20148927 4.35 2.38 2.94 16.67 4.17 7.69 16.13 5.13 11.11 0.00 0.00 4.69 0.00 0.00 7.89 2.63 0.00 0.00 4.35 7.25 0.00 0.00 0.00 5.00 NA 8.33 14.29 NA 11.76 0.00 5.71 0.00 5.88 2.08 7.89 12.00 5.56 5.00 0.00 5.26 6.67 3.12 0.00 5.00 4.35 4.76 0.00 10.00 10.71 0.00 0.00 0.00 7.41 0.00 5.26 0.00 0.00 7.41 K alternative_acceptor CG5261,I_chr2L_7428611_7428877 chr2L + chr2L_7428680_7428778;chr2L_7428680_7428925 chr2L_7428680_7428877 chr2L_7428612_7428679;chr2L_7428926_7428977 97.22 98.70 96.61 96.25 100.00 96.43 98.72 97.44 98.45 95.83 98.41 97.98 97.37 97.50 97.33 100.00 100.00 98.15 97.50 97.63 98.15 92.77 96.59 96.30 95.74 97.56 96.92 95.08 97.06 97.30 93.65 94.29 97.14 97.37 95.65 98.46 97.22 97.44 97.03 96.84 100.00 96.03 97.22 95.95 95.00 98.39 96.97 96.43 97.73 96.08 98.73 94.29 98.21 91.07 98.36 100.00 95.60 96.67 K jcn_only_AA pcm chrX - chrX_19380372_19380437 chrX_19380375_19380437 chrX_19380438_19381100;chrX_19380294_19380371 41.94 42.31 50.00 37.50 52.17 NA 29.17 31.82 39.62 52.38 NA 31.91 40.91 NA 25.93 45.16 40.91 38.46 35.71 43.90 NA 41.94 36.96 42.86 NA NA 50.00 NA 47.62 37.50 58.06 52.78 43.08 36.36 39.47 51.72 48.84 45.95 25.42 45.76 47.22 32.73 NA 48.39 35.48 40.91 40.00 44.44 40.00 31.25 43.24 39.47 51.85 53.06 48.15 50.00 34.29 28.57 K jcn_only_AA Mtp,I_chr2L_20922613_20922685 chr2L - chr2L_20920215_20920285 chr2L_20920227_20920285 chr2L_20920286_20921216;chr2L_20919686_20920214 100.00 NA 100.00 100.00 100.00 100.00 97.96 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 98.00 100.00 95.65 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 NA NA 100.00 100.00 100.00 100.00 K cassette PhKgamma,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11592631_11597322;chrX_11593440_11597322 chrX_11592631_11594653,chrX_11593440_11594653;chrX_11595165_11597322 chrX_11594654_11595164 chrX_11592533_11592630;chrX_11597323_11597422 82.61 91.43 86.67 72.97 66.67 82.61 96.67 75.68 81.48 85.71 90.00 95.45 33.33 83.33 73.08 90.00 72.00 80.95 75.00 82.19 100.00 63.33 82.46 86.54 83.33 77.78 80.00 65.71 78.57 80.36 80.77 96.67 93.10 81.58 75.00 94.59 93.51 87.23 87.14 82.35 88.89 77.42 85.00 85.42 89.29 77.08 83.33 80.95 85.11 80.00 76.79 84.62 91.67 80.00 82.61 82.50 90.38 92.45 K jcn_only_AD RpL3,I_chr3R_7047694_7047896,I_chr3R_7047774_7047896,E_chr3R_7047964_7050565,I_chr3R_7049970_7050189 chr3R + chr3R_7047774_7047896;chr3R_7047694_7047896 chr3R_7047655_7047896 chr3R_7047897_7047963;chr3R_7047619_7047654 99.97 99.86 99.98 99.97 100.00 99.97 99.97 99.98 99.98 99.65 100.00 99.96 99.89 99.95 99.88 100.00 100.00 100.00 100.00 99.95 100.00 99.88 98.73 98.99 100.00 99.94 98.59 100.00 99.65 98.86 99.69 99.89 100.00 99.94 99.47 100.00 99.79 100.00 99.78 99.69 99.81 99.96 100.00 100.00 100.00 99.61 100.00 99.75 99.92 100.00 100.00 100.00 100.00 96.55 99.98 100.00 100.00 100.00 K intron_retention Pdsw chr2L + chr2L_3466229_3466297 chr2L_3466228_3466229;chr2L_3466297_3466298 chr2L_3466160_3466228;chr2L_3466298_3466416 100.00 NA NA 100.00 NA NA 93.33 100.00 NA NA NA 88.89 NA NA NA NA NA NA NA 90.91 NA NA NA NA 100.00 100.00 90.00 NA NA NA NA NA NA NA NA 100.00 NA NA NA NA 100.00 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA N intron_retention CG31619,I_chr2L_21725446_21728027 chr2L + chr2L_21719644_21728027 chr2L_21719643_21719644;chr2L_21728027_21728028 chr2L_21719514_21719643;chr2L_21728028_21728127 100.00 NA NA 70.00 NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA I_chr2L_822032_822857,dock chr2L + chr2L_826508_829304;chr2L_826508_829421 chr2L_826508_829456 chr2L_826008_826507;chr2L_829457_829468 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.89 0.00 0.00 2.17 0.00 0.00 0.00 1.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 K intron_retention Dscam,I_chr2R_3212243_3212342,F_chr2R_3219886_3228832,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3209155_3210064 chr2R_3209154_3209155;chr2R_3210064_3210065 chr2R_3209088_3209154;chr2R_3210065_3210223 4.10 0.00 10.00 4.55 NA NA NA 3.85 10.42 NA NA 6.67 NA NA 5.26 5.00 9.52 NA 5.26 17.39 NA 3.12 0.00 4.35 NA NA 0.00 5.88 0.00 3.33 9.68 0.00 3.57 0.00 NA NA 4.76 5.56 0.00 6.00 NA 21.43 NA 5.71 0.00 0.00 0.00 0.00 12.90 0.00 10.53 NA NA NA 0.00 0.00 0.00 NA K alternative_acceptor CG30372,coilin,I_chr2R_4012973_4013037,RI_chr2R_4012976_4013037 chr2R - chr2R_4012979_4013037;chr2R_4012973_4013037 chr2R_4012976_4013037 chr2R_4013038_4013137;chr2R_4012876_4012972 20.00 22.22 27.27 10.00 20.00 33.33 18.18 14.29 17.65 NA 20.00 28.57 16.67 NA 33.33 16.67 33.33 16.67 16.67 18.75 14.29 NA 27.27 0.00 33.33 14.29 22.22 NA 28.57 16.67 25.00 NA 11.11 18.18 20.00 NA 28.57 NA NA 40.00 0.00 27.78 NA 30.00 28.57 9.09 41.67 NA 10.00 28.57 30.00 16.67 NA NA 14.29 25.00 33.33 12.50 K intron_retention CG15107,I_chr2R_14859289_14859333 chr2R - chr2R_14859692_14859749 chr2R_14859691_14859692;chr2R_14859749_14859750 chr2R_14859334_14859691;chr2R_14859750_14860016 0.00 0.00 4.00 2.22 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 NA 0.00 0.00 0.00 0.00 7.69 9.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5987603_5991760,I_chr2R_5988662_5991760,I_chr2R_5988666_5991760,I_chr2R_5988919_5991760,I_chr2R_5988931_5991760,I_chr2R_5990647_5991760,I_chr2R_5991249_5991760,I_chr2R_5991689_5991760,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5988603_5991760 chr2R_5988602_5988603;chr2R_5991760_5991761 chr2R_5988596_5988602;chr2R_5991761_5991860 0.00 0.00 1.24 0.69 0.00 0.00 0.85 0.72 0.77 0.00 0.00 0.32 0.00 1.06 0.00 0.30 0.00 0.00 1.73 0.00 0.94 0.00 1.83 1.68 0.00 0.00 0.00 2.41 4.03 0.00 0.78 0.00 0.00 1.36 0.00 0.00 1.15 0.00 2.13 0.00 1.35 1.25 0.00 3.64 0.00 0.91 2.78 1.54 0.71 0.00 1.47 1.27 0.00 0.00 0.00 0.00 0.00 1.17 K cassette RI_chr2L_8218680_8218853,Pvr,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8225416_8225671 chr2L_8225416_8225485;chr2L_8225513_8225671 chr2L_8225486_8225512 chr2L_8225106_8225415;chr2L_8225672_8226141 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG11063 chrX - chrX_13720751_13720819 chrX_13720750_13720751;chrX_13720819_13720820 chrX_13720329_13720750;chrX_13720820_13720985 0.00 0.69 0.00 3.17 0.00 1.09 0.00 0.00 1.33 2.99 0.00 0.00 0.00 0.00 1.67 1.00 0.00 0.00 0.00 0.71 0.00 3.73 0.74 0.00 0.00 0.00 2.26 7.78 3.76 0.00 0.00 0.00 0.00 2.21 0.00 0.86 0.84 0.00 0.00 1.05 0.97 0.50 1.45 0.00 1.37 0.95 1.09 0.00 0.55 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 K intron_retention CG15739 chrX + chrX_11768299_11768419 chrX_11768298_11768299;chrX_11768419_11768420 chrX_11767915_11768298;chrX_11768420_11769341 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 3.57 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 K jcn_only_AD CG7203,Rack1,RI_chr2L_7826337_7826533 chr2L - chr2L_7826982_7827063 chr2L_7826982_7827060 chr2L_7826913_7826981;chr2L_7827064_7827129 100.00 100.00 100.00 99.99 100.00 100.00 100.00 100.00 100.00 100.00 99.98 99.99 100.00 100.00 100.00 99.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.99 99.98 100.00 100.00 99.98 100.00 100.00 100.00 100.00 100.00 99.99 100.00 99.98 100.00 100.00 100.00 100.00 100.00 100.00 99.99 100.00 100.00 99.99 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.99 K intron_retention vri chr2L + chr2L_5307913_5308020 chr2L_5307912_5307913;chr2L_5308020_5308021 chr2L_5307565_5307912;chr2L_5308021_5310625 0.00 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 9.09 0.00 NA 0.00 6.45 0.00 0.00 NA NA NA NA 0.00 0.00 2.33 0.00 0.00 3.33 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA K intron_retention CG7546 chr3L + chr3L_7508878_7508970 chr3L_7508877_7508878;chr3L_7508970_7508971 chr3L_7508741_7508877;chr3L_7508971_7509150 20.69 16.13 12.50 12.50 NA NA 15.00 19.05 10.00 25.00 NA 21.74 NA NA 20.00 13.33 NA NA NA 18.42 NA 36.84 27.08 19.44 23.81 NA 20.00 18.18 25.00 27.59 NA 13.33 30.00 9.52 29.41 24.00 18.92 20.93 21.95 23.33 25.00 16.67 NA 17.24 21.05 21.43 30.00 NA 15.62 20.00 26.47 13.04 20.69 18.75 NA 23.08 25.81 30.77 K intron_retention Nipped-B,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_616057_616318 chr2R_616056_616057;chr2R_616318_616319 chr2R_615957_616056;chr2R_616319_616329 54.20 NA NA 61.11 NA NA 57.14 38.46 50.00 NA NA 43.75 35.71 69.23 NA 64.00 NA NA 54.55 57.14 NA NA NA NA NA NA NA NA 33.33 NA NA NA 54.55 47.83 NA NA NA NA NA NA NA 53.85 NA 40.00 NA NA NA 72.73 73.68 NA 33.33 NA NA NA NA NA NA NA K jcn_only_AD gro chr3R + chr3R_21868626_21868716;chr3R_21868622_21868716 chr3R_21868657_21868716 chr3R_21868717_21869101;chr3R_21868588_21868621 10.00 NA NA NA NA NA NA NA 17.39 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA 4.17 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention tomosyn,I_chrX_12531219_12531470,I_chrX_12534873_12541731,noncoding_23357,I_chrX_12548772_12549203 chrX + chrX_12534873_12537905 chrX_12534872_12534873;chrX_12537905_12537906 chrX_12534773_12534872;chrX_12537906_12538026 7.69 NA 5.88 8.33 NA 7.69 11.76 9.09 5.71 NA 14.29 7.41 NA 11.76 0.00 NA 0.00 NA 0.00 0.00 NA NA 13.33 NA NA NA NA NA NA NA 0.00 NA NA 19.05 NA NA 0.00 NA NA 0.00 NA 18.18 6.67 7.69 NA 0.00 NA 7.69 17.24 NA 7.69 NA NA NA 12.50 NA NA NA K alternative_acceptor sec8 chr3R - chr3R_1581962_1582042 chr3R_1581990_1582042 chr3R_1582043_1582444;chr3R_1581386_1581961 100.00 100.00 92.31 100.00 100.00 100.00 100.00 96.30 97.30 87.50 100.00 100.00 95.45 100.00 100.00 100.00 100.00 91.67 100.00 96.00 100.00 100.00 100.00 94.44 85.71 100.00 92.86 100.00 100.00 90.00 95.00 92.31 95.65 96.67 100.00 100.00 90.91 100.00 92.31 97.30 100.00 96.67 100.00 100.00 100.00 100.00 100.00 96.43 96.77 100.00 95.65 100.00 100.00 100.00 94.74 93.33 100.00 100.00 K alternative_donor CG3829,I_chr2R_20874677_20875710,I_chr2R_20874711_20875717,I_chr2R_20875172_20875710,I_chr2R_20875497_20875710 chr2R + chr2R_20875497_20875710;chr2R_20875172_20875710;chr2R_20875350_20875710 chr2R_20874711_20875710 chr2R_20875711_20875810;chr2R_20874611_20874710 72.73 66.67 61.54 57.14 77.78 57.14 58.33 50.00 61.11 NA 57.14 73.33 60.00 33.33 57.14 46.15 62.50 72.73 57.14 68.00 40.00 75.00 75.00 90.00 NA 70.00 62.50 75.00 77.78 80.00 77.78 66.67 50.00 50.00 100.00 80.00 NA NA 83.33 81.82 87.50 64.29 85.71 85.71 75.00 100.00 100.00 85.71 63.64 80.00 87.50 100.00 NA NA 66.67 33.33 80.00 77.78 K intron_retention CG1407,RI_chr2R_5918952_5919093 chr2R - chr2R_5916563_5918589 chr2R_5916562_5916563;chr2R_5918589_5918590 chr2R_5915948_5916562;chr2R_5918590_5918719 0.00 8.70 8.00 18.18 0.00 0.00 0.00 5.13 0.00 NA 0.00 2.94 13.04 0.00 0.00 19.05 NA 0.00 0.00 4.11 0.00 0.00 2.56 0.00 0.00 0.00 4.88 NA NA 0.00 0.00 NA 5.56 0.00 6.67 NA 7.14 0.00 0.00 4.00 6.67 4.88 0.00 0.00 0.00 0.00 0.00 NA 0.00 8.33 6.25 0.00 0.00 0.00 7.14 0.00 0.00 0.00 K alternative_donor katanin-60 chr3R - chr3R_1056937_1057778 chr3R_1056937_1057627 chr3R_1056715_1056936;chr3R_1057779_1057940 8.16 4.76 0.00 3.70 11.76 15.00 8.82 5.26 10.26 NA 6.25 8.00 14.29 11.11 9.68 8.70 5.56 5.71 6.45 11.34 9.52 20.00 8.70 9.09 7.41 25.00 10.00 15.00 10.53 5.56 4.88 14.29 13.33 4.65 6.25 7.41 3.85 9.52 16.13 10.53 20.00 6.52 3.85 7.14 5.26 9.68 8.33 12.50 8.00 2.44 15.15 3.85 5.56 4.35 6.25 4.55 9.09 0.00 K jcn_only_AA Dsp1,I_chrX_16228447_16229355,I_chrX_16231287_16231413 chrX + chrX_16228447_16230299;chrX_16228447_16230323 chrX_16228447_16230320 chrX_16228347_16228446;chrX_16230324_16230776 75.00 72.06 69.31 76.34 69.23 71.11 78.69 71.52 66.97 61.29 76.81 72.16 74.44 76.19 77.17 76.16 74.03 64.36 75.22 78.01 78.75 57.30 71.54 71.74 79.41 75.68 68.42 63.04 82.14 70.83 75.53 81.40 79.63 74.03 80.95 80.00 78.26 75.86 69.07 72.95 78.12 75.00 83.02 75.32 65.62 73.97 77.94 73.91 74.07 78.82 73.28 74.39 80.39 81.67 76.34 75.71 71.83 68.09 K jcn_only_AA CG42595,I_chr2RHet_3137161_3169314,I_chr2RHet_3137489_3169314,I_chr2RHet_3155517_3174709,I_chr2RHet_3169357_3169432,RI_chr2RHet_3175044_3179353,I_chr2RHet_3179481_3179586 chr2RHet - chr2RHet_3169357_3169432 chr2RHet_3169385_3169432 chr2RHet_3169433_3169532;chr2RHet_3169315_3169356 97.14 98.44 96.83 93.92 98.48 96.88 96.04 98.24 95.63 100.00 97.73 96.52 100.00 97.44 100.00 94.41 96.36 97.67 98.53 95.88 96.55 92.31 97.53 98.59 97.44 94.57 97.26 100.00 96.88 100.00 95.65 95.83 100.00 97.40 96.00 87.10 95.35 91.18 100.00 98.61 NA 94.48 97.17 95.24 NA 100.00 97.14 100.00 99.45 92.86 97.50 94.59 100.00 96.43 94.49 97.73 94.23 92.86 K cassette Doa,I_chr3R_24715823_24718923,I_chr3R_24747391_24747896 chr3R + chr3R_24726745_24745946 chr3R_24726745_24745213;chr3R_24745290_24745946 chr3R_24745214_24745289 chr3R_24726546_24726744;chr3R_24745947_24746013 96.55 93.00 96.70 97.14 98.31 94.20 71.19 97.39 96.34 94.44 95.83 95.65 96.08 98.73 99.02 99.18 95.24 96.00 95.24 96.89 96.55 96.04 96.49 94.70 93.62 100.00 96.83 93.65 97.40 95.45 92.86 98.18 98.67 98.41 94.44 98.91 95.36 97.22 95.98 92.65 94.74 98.31 98.21 97.06 98.57 98.86 94.67 97.40 97.53 95.35 95.56 96.47 98.41 98.39 99.06 95.29 96.88 98.36 K jcn_only_AD CEI_chrX_17177009_17196871,CG5445,I_chrX_17196752_17196871,RI_chrX_17196772_17196871,I_chrX_17196820_17196875,I_chrX_17198393_17198730 chrX + chrX_17196546_17196871;chrX_17196820_17196871;chrX_17196541_17196871;chrX_17196617_17196871 chrX_17196681_17196871 chrX_17196872_17196971;chrX_17196536_17196540 0.00 0.00 0.00 NA NA NA 0.00 3.03 1.89 NA NA 9.09 NA NA NA 3.85 NA 0.00 0.00 3.28 NA 0.00 10.00 3.57 NA 5.00 8.00 13.04 6.67 NA NA NA 0.00 0.00 NA NA 3.12 NA 0.00 4.88 0.00 3.45 0.00 0.00 NA 0.00 0.00 2.22 8.33 0.00 8.33 0.00 0.00 0.00 NA 9.09 0.00 0.00 K alternative_acceptor CG7843,I_chr2R_1972736_1972822 chr2R - chr2R_1972525_1972590 chr2R_1972537_1972590 chr2R_1972591_1972735;chr2R_1972352_1972524 79.31 77.36 87.50 91.67 87.50 76.47 85.19 69.57 76.56 76.74 77.78 87.72 70.00 82.61 79.41 61.11 76.19 76.47 58.82 80.77 73.68 80.00 81.82 82.35 79.63 75.00 83.78 89.39 77.14 78.12 89.47 82.86 82.50 76.92 83.67 69.57 81.91 72.41 73.91 82.47 78.95 81.33 66.67 89.58 82.09 75.51 72.73 78.33 76.60 90.24 81.82 80.00 80.77 79.31 68.57 75.00 76.74 88.06 K intron_retention FKBP59,CG4537 chr2L + chr2L_9888986_9889047 chr2L_9888985_9888986;chr2L_9889047_9889048 chr2L_9888847_9888985;chr2L_9889048_9889405 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.20 0.00 0.45 0.44 0.00 0.00 0.00 0.27 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG8080,RI_chr2R_4978542_4978911,REI_chr2R_4978545_4978911,REI_chr2R_4979159_4979234,I_chr2R_4979276_4979936 chr2R - chr2R_4978545_4978911;chr2R_4978557_4978911 chr2R_4978542_4978911 chr2R_4978912_4979011;chr2R_4978445_4978541 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 7.69 5.00 0.00 0.00 7.69 9.09 0.00 7.69 0.00 0.00 5.56 7.14 7.14 0.00 12.50 9.09 0.00 7.14 11.11 0.00 4.76 9.09 0.00 8.70 4.55 9.09 5.71 7.69 0.00 0.00 0.00 5.26 3.70 5.00 0.00 8.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.00 K jcn_only_AD Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3295176;chr2R_3294566_3295244;chr2R_3294566_3294634;chr2R_3294566_3294636;chr2R_3294566_3294638;chr2R_3294566_3295280;chr2R_3294566_3294714 chr2R_3294566_3294642 chr2R_3294491_3294565;chr2R_3295281_3295302 31.48 33.33 34.38 11.54 NA 44.44 22.86 20.59 20.73 NA 18.18 35.19 36.00 23.81 25.64 24.14 28.57 25.00 38.46 23.88 13.33 56.00 30.00 25.81 31.25 37.04 47.83 35.48 34.38 28.12 34.29 16.67 36.36 32.50 NA NA 41.86 36.36 31.71 47.27 30.77 26.42 13.64 34.38 45.00 21.43 36.00 26.19 20.90 22.73 33.33 39.29 34.29 NA 30.00 29.17 52.17 33.93 K intron_retention CG32428 chr3L - chr3L_20463085_20464027 chr3L_20463084_20463085;chr3L_20464027_20464028 chr3L_20462772_20463084;chr3L_20464028_20464246 100.00 100.00 97.44 100.00 100.00 96.97 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.89 100.00 100.00 97.30 96.88 100.00 100.00 96.77 96.00 100.00 100.00 97.37 96.30 95.56 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 96.55 100.00 96.55 100.00 100.00 88.24 96.67 94.64 K alternative_acceptor CG3860,RI_chr2R_19882285_19882350 chr2R - chr2R_19882268_19882350 chr2R_19882285_19882350 chr2R_19882351_19882429;chr2R_19882210_19882267 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 6.25 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 K alternative_donor Anxb11,I_chrX_16314152_16315813 chrX - chrX_16312623_16312700 chrX_16312623_16312696 chrX_16312393_16312622;chrX_16312701_16313082 0.97 1.45 0.00 1.33 0.00 0.00 1.32 0.00 0.00 0.00 1.20 0.74 0.00 0.00 0.00 0.00 2.22 2.00 1.45 0.82 0.00 3.39 1.16 1.04 0.00 0.00 1.23 1.79 3.12 2.22 3.00 0.00 0.00 0.97 0.00 0.00 1.16 1.16 2.11 0.00 2.56 0.87 0.00 0.72 0.00 1.43 1.09 0.00 0.00 1.42 1.23 1.82 1.37 1.59 0.00 1.52 0.00 1.67 K intron_retention Mct1 chrX + chrX_2098471_2098541 chrX_2098470_2098471;chrX_2098541_2098542 chrX_2098140_2098470;chrX_2098542_2098742 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.26 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 K cassette Nc73EF,I_chr3L_16952985_16955434,I_chr3L_16953768_16954599 chr3L + chr3L_16958079_16960481 chr3L_16958079_16959167;chr3L_16959459_16960481 chr3L_16959168_16959458 chr3L_16957924_16958078;chr3L_16960482_16961180 1.46 1.01 3.37 2.40 1.79 2.15 1.67 2.26 1.58 1.16 4.35 2.01 1.72 1.56 1.20 1.16 1.59 1.11 3.08 1.79 2.90 0.83 1.50 0.85 1.18 3.70 1.15 2.25 0.50 1.52 2.22 1.80 0.65 1.89 0.89 1.48 0.60 1.70 0.43 0.95 0.45 1.19 1.49 1.03 1.45 1.46 1.26 0.88 1.35 0.81 1.04 1.44 1.53 0.78 2.06 0.95 1.19 2.02 K jcn_only_AD Osi19 chr3R + chr3R_2161894_2162001 chr3R_2161921_2162001 chr3R_2162002_2162010;chr3R_2161644_2161893 73.03 NA 70.00 92.94 75.00 68.57 56.52 76.79 72.50 NA NA 74.07 85.71 86.96 69.57 77.27 NA NA NA 73.33 NA 90.00 76.92 NA 80.95 NA 70.37 NA 66.67 NA NA NA 68.18 75.76 NA 83.33 75.00 NA 71.43 50.00 NA 78.00 NA 75.00 60.47 62.50 83.87 72.73 82.93 70.83 NA NA 57.14 60.00 65.71 62.50 75.00 50.00 K jcn_only_AA DppIII,CG7352 chr3R + chr3R_4170206_4170530 chr3R_4170206_4170512 chr3R_4170198_4170205;chr3R_4170531_4170745 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA 4.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 4.55 NA NA 10.34 NA NA NA NA NA NA NA 3.03 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention Hsc70-3,I_chrX_11699076_11699138,I_chrX_11699076_11699158,I_chrX_11699076_11699260,EI_chrX_11699076_11699573,I_chrX_11699076_11700062 chrX - chrX_11699076_11700276 chrX_11699075_11699076;chrX_11700276_11700277 chrX_11698976_11699075;chrX_11700277_11700394 0.56 0.64 0.00 0.32 0.00 0.00 0.55 0.82 0.38 0.00 0.00 0.63 0.00 1.06 0.56 0.27 0.60 0.00 0.47 0.59 0.00 0.61 0.00 1.35 1.48 0.91 1.75 4.19 4.35 0.00 1.16 0.00 0.00 0.65 3.66 1.57 2.30 0.00 0.00 2.05 0.99 0.65 0.62 3.95 0.00 1.15 1.27 0.00 0.56 0.00 0.61 0.00 0.00 0.00 1.55 0.00 0.00 1.31 K intron_retention CycT,I_chr3L_17548631_17550687 chr3L - chr3L_17548631_17549473 chr3L_17548630_17548631;chr3L_17549473_17549474 chr3L_17548531_17548630;chr3L_17549474_17549519 17.65 19.64 17.74 48.44 15.38 26.53 14.58 22.22 17.05 15.62 41.18 21.49 18.00 24.49 21.15 13.13 18.18 28.21 21.05 20.53 25.81 14.61 14.29 9.52 18.33 27.27 23.75 32.97 14.81 21.52 24.53 14.81 17.14 18.60 10.91 9.68 10.79 15.25 11.57 21.37 15.15 15.09 17.65 11.94 8.70 15.15 20.00 21.54 18.81 10.00 16.25 9.09 13.33 15.79 26.67 12.50 10.00 24.24 K alternative_donor RpLP0 chr3L + chr3L_22069237_22069347 chr3L_22069287_22069347 chr3L_22069348_22069440;chr3L_22069220_22069236 0.11 0.09 0.05 0.12 0.07 0.06 0.12 0.06 0.05 0.00 0.06 0.13 0.00 0.06 0.11 0.05 0.20 0.10 0.04 0.02 0.06 0.34 0.19 0.48 0.16 0.05 0.36 0.95 0.00 0.00 0.31 0.49 0.00 0.03 0.18 0.22 0.44 0.27 0.09 0.17 0.00 0.05 0.06 0.22 0.28 0.00 0.17 0.00 0.15 0.23 0.28 0.33 0.00 0.15 0.08 0.19 0.12 0.48 K alternative_acceptor CG15514 chr3R - chr3R_25686337_25686428 chr3R_25686358_25686428 chr3R_25686429_25687281;chr3R_25685755_25686336 40.30 49.30 32.88 48.96 44.62 48.48 54.43 34.04 39.23 43.64 39.68 46.90 37.88 36.36 40.30 40.24 45.65 37.88 47.46 39.84 37.74 57.63 39.08 37.36 39.62 55.07 39.08 35.29 44.12 44.44 33.80 34.43 31.17 36.63 45.31 58.57 36.94 50.75 32.77 51.02 44.07 42.34 37.50 41.54 37.21 39.56 40.24 39.66 32.76 38.06 44.32 42.00 49.15 42.50 43.06 42.55 40.40 52.38 K intron_retention CG10462 chr2L - chr2L_19734942_19734999 chr2L_19734941_19734942;chr2L_19734999_19735000 chr2L_19734470_19734941;chr2L_19735000_19735221 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K mutually_exclusive CG18769,I_chr3L_6544367_6555421 chr3L + chr3L_6543970_6555421,chr3L_6555519_6583703 chr3L_6543970_6544781,chr3L_6545050_6583703 chr3L_6555422_6555518 chr3L_6544782_6545049 chr3L_6543963_6543969;chr3L_6583704_6583935 30.95 NA NA NA NA NA 60.00 0.00 NA 60.00 0.00 NA NA NA NA NA NA NA NA NA NA 28.57 NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG31523,I_chr3R_294322_294479,RI_chr3R_294322_296218,I_chr3R_294322_297157,I_chr3R_294322_298014,I_chr3R_294322_300973,RI_chr3R_294322_300982,I_chr3R_294322_304799,RI_chr3R_298911_304354 chr3R - chr3R_294322_304674 chr3R_294322_304354 chr3R_294222_294321;chr3R_304675_304743 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 97.92 100.00 100.00 100.00 100.00 100.00 98.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 98.68 100.00 100.00 100.00 100.00 100.00 100.00 98.21 100.00 98.41 96.55 99.24 98.94 100.00 98.28 100.00 100.00 100.00 98.04 100.00 100.00 100.00 N alternative_donor orb2,I_chr3L_8942860_8947477 chr3L - chr3L_8940990_8941982 chr3L_8940990_8941183 chr3L_8940928_8940989;chr3L_8941983_8942380 5.97 6.25 6.67 12.24 6.06 5.26 6.85 8.06 11.34 2.50 5.71 4.59 5.56 4.55 5.26 9.80 4.44 11.11 6.12 6.60 5.26 5.71 4.21 5.95 5.77 5.00 4.72 10.13 6.94 3.90 8.00 3.57 5.97 7.46 9.52 3.57 5.06 5.66 2.88 8.05 5.08 7.14 6.67 5.66 6.12 2.94 3.17 7.55 11.69 5.94 9.38 5.00 7.14 3.39 6.45 7.14 6.25 6.12 K intron_retention CG3714,I_chr2L_4190825_4191774,I_chr2L_4192178_4192632,I_chr2L_4195905_4196470,RI_chr2L_4196780_4197951 chr2L - chr2L_4190020_4190082 chr2L_4190019_4190020;chr2L_4190082_4190083 chr2L_4189427_4190019;chr2L_4190083_4190492 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 3.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention aru,I_chr2L_864795_867505,snoRNA:Me28S-U1230 chr2L - chr2L_864795_865826 chr2L_864794_864795;chr2L_865826_865827 chr2L_864695_864794;chr2L_865827_865847 78.95 NA 100.00 59.09 NA 100.00 100.00 100.00 55.56 NA 9.26 100.00 100.00 100.00 100.00 100.00 100.00 23.33 100.00 78.95 14.29 100.00 NA NA NA 100.00 NA NA 39.47 52.38 100.00 57.89 43.90 72.22 NA NA NA NA NA 68.75 100.00 56.86 100.00 NA 44.44 65.38 NA 60.00 66.67 NA NA NA NA NA 100.00 NA NA 60.47 K intron_retention CG1621,noncoding_4901 chr2R - chr2R_3379387_3379450 chr2R_3379386_3379387;chr2R_3379450_3379451 chr2R_3379231_3379386;chr2R_3379451_3380297 5.48 0.00 8.33 0.00 0.00 5.56 7.14 0.00 9.76 7.14 13.33 7.14 NA 0.00 10.00 0.00 NA NA NA 4.76 7.14 21.05 0.00 0.00 NA 0.00 8.00 5.56 11.54 0.00 NA 0.00 7.14 0.00 0.00 12.50 0.00 7.14 0.00 13.51 0.00 5.41 14.29 NA 8.33 10.53 0.00 0.00 6.25 0.00 7.14 NA NA 0.00 0.00 0.00 8.33 7.41 K jcn_only_AD CG10600,I_chr2L_18836445_18836522,RI_chr2L_18838793_18838882 chr2L - chr2L_18836445_18836522 chr2L_18836445_18836518 chr2L_18836345_18836444;chr2L_18836523_18836622 100.00 100.00 100.00 98.51 100.00 100.00 98.46 100.00 98.47 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 96.00 97.62 98.99 100.00 100.00 100.00 100.00 100.00 100.00 98.98 100.00 98.46 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 98.80 99.27 96.97 96.97 100.00 97.56 100.00 100.00 97.87 100.00 100.00 100.00 100.00 98.04 100.00 96.43 100.00 97.83 100.00 97.78 100.00 K intron_retention Nop60B,RI_chr2R_20063248_20063455,I_chr2R_20063248_20063949,snoRNA:Psi18S-1820,F_chr2R_20073291_20073744 chr2R + chr2R_20063248_20063455 chr2R_20063247_20063248;chr2R_20063455_20063456 chr2R_20063148_20063247;chr2R_20063456_20063555 93.51 93.94 82.50 91.30 89.47 88.57 95.35 95.24 87.50 96.97 88.89 90.67 96.77 92.31 94.87 93.62 96.67 75.00 90.32 90.22 87.80 98.33 93.64 96.12 97.83 90.00 96.74 100.00 93.33 91.84 44.00 92.86 98.55 89.80 92.06 97.10 93.33 96.70 96.83 95.00 93.02 88.64 96.43 94.44 79.07 93.33 97.56 87.50 88.61 97.12 95.12 94.00 95.42 95.29 90.00 93.51 93.63 82.46 K intron_retention gish chr3R + chr3R_12100598_12100675 chr3R_12100597_12100598;chr3R_12100675_12100676 chr3R_12100535_12100597;chr3R_12100676_12100891 98.47 99.17 100.00 97.48 98.75 99.02 98.10 97.85 98.35 97.47 95.51 97.98 98.91 98.10 98.46 98.54 98.94 98.96 98.06 96.62 97.73 100.00 98.70 98.59 97.25 100.00 98.75 98.59 99.14 96.85 96.27 98.72 97.27 97.62 98.39 99.16 99.34 99.12 99.44 96.28 97.84 98.06 98.72 98.47 98.48 97.44 98.84 96.11 98.85 98.77 98.89 97.62 93.65 98.48 97.08 95.35 100.00 96.36 K intron_retention CG3829,I_chr2R_20874677_20875710,I_chr2R_20874711_20875717,I_chr2R_20875172_20875710,I_chr2R_20875497_20875710 chr2R + chr2R_20875350_20875710 chr2R_20875349_20875350;chr2R_20875710_20875711 chr2R_20875323_20875349;chr2R_20875711_20875810 3.84 NA 3.33 9.52 NA 5.26 23.08 0.00 2.70 NA 14.29 0.00 6.25 0.00 0.00 6.98 0.00 0.00 0.00 0.00 14.29 NA NA NA NA 0.00 NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA 4.35 NA NA NA NA NA NA 7.69 NA NA NA NA NA 14.29 NA NA NA K jcn_only_AD CG1407,RI_chr2R_5918919_5919093,I_chr2R_5918925_5919213,RI_chr2R_5918952_5919084,RI_chr2R_5918952_5919093 chr2R - chr2R_5918952_5919093 chr2R_5918952_5919084 chr2R_5918927_5918951;chr2R_5919094_5919184 35.51 35.00 35.07 33.90 42.06 49.49 26.98 41.23 37.00 32.00 27.93 32.13 45.00 37.21 42.86 40.00 47.69 34.96 32.17 40.29 40.94 30.08 39.32 35.34 50.00 37.93 43.75 37.78 40.91 27.27 36.50 42.86 42.00 32.34 37.50 34.72 28.99 33.02 37.31 17.52 34.38 35.50 38.38 35.51 38.33 32.05 34.38 33.33 38.46 28.00 36.36 27.96 33.33 38.46 40.44 31.71 30.37 15.38 K alternative_acceptor CG5591 chr2R + chr2R_19789479_19789554 chr2R_19789479_19789542 chr2R_19787515_19789478;chr2R_19789555_19789687 100.00 NA NA 100.00 NA 100.00 90.00 100.00 90.91 NA NA 100.00 NA NA NA 92.31 NA 100.00 87.50 87.50 NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 87.50 NA NA NA 88.89 NA NA 100.00 NA NA NA NA NA NA 93.75 90.91 NA NA NA NA NA NA 100.00 NA N jcn_only_AD CG1115,F_chr3R_1052705_1053045 chr3R + chr3R_1052701_1053045;chr3R_1052718_1053045 chr3R_1052705_1053045 chr3R_1053046_1053145;chr3R_1052605_1052700 0.00 1.49 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 3.85 0.00 0.00 0.00 8.70 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 3.57 0.00 0.00 0.00 1.45 NA 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.93 0.00 K alternative_donor I_chr2L_6323791_6325172,Gef26,I_chr2L_6330719_6330770,I_chr2L_6330891_6331043 chr2L + chr2L_6330887_6331043 chr2L_6330891_6331043 chr2L_6331044_6331143;chr2L_6330791_6330886 0.00 NA NA NA NA NA 0.00 0.00 3.45 NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 3.57 NA NA NA NA NA NA NA 0.00 NA N jcn_only_AD CG31619 chr2L + chr2L_21711411_21712768 chr2L_21711681_21712768 chr2L_21712769_21712966;chr2L_21711315_21711410 0.00 0.00 11.96 4.86 0.00 0.00 17.02 7.05 5.98 0.00 NA 6.92 0.00 0.00 9.35 0.00 9.00 0.00 0.00 6.50 NA 0.00 0.00 0.00 0.00 9.91 0.00 0.00 0.00 6.96 13.67 0.00 0.00 5.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention par-1,RI_chr2R_15348122_15356294,I_chr2R_15355073_15356294,RI_chr2R_15355419_15356294,I_chr2R_15359251_15360944,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15355073_15356294 chr2R_15355072_15355073;chr2R_15356294_15356295 chr2R_15354975_15355072;chr2R_15356295_15356318 90.24 100.00 NA 92.86 NA NA 90.00 92.31 84.85 90.91 NA 81.82 81.82 78.57 NA 90.48 78.57 NA 92.31 94.74 NA 66.67 80.00 75.00 87.50 NA 91.67 75.00 92.31 88.24 89.47 NA 92.00 90.91 92.31 91.67 100.00 88.89 100.00 92.86 100.00 73.33 77.78 100.00 NA 88.89 90.00 100.00 80.95 77.78 93.75 92.86 NA NA 76.47 NA NA NA K cassette vap,RI_chrX_15897976_15899352,I_chrX_15897976_15899654,I_chrX_15898011_15899654,I_chrX_15898427_15899017,RI_chrX_15898427_15899654,RI_chrX_15899237_15899352,I_chrX_15899237_15899654 chrX - chrX_15898120_15899352;chrX_15898120_15899017;chrX_15898120_15899654 chrX_15898120_15898360;chrX_15898478_15899654,chrX_15898478_15899017,chrX_15898478_15899352 chrX_15898361_15898477 chrX_15897748_15898119;chrX_15899655_15899705 56.41 68.18 58.70 60.00 55.00 57.69 48.28 77.97 55.41 29.17 94.12 67.92 51.72 56.41 46.43 60.71 51.43 29.03 56.00 67.92 76.19 37.50 66.67 54.17 52.63 46.67 55.56 50.00 64.71 60.00 57.50 55.56 38.89 67.21 53.33 52.63 78.57 57.14 53.85 33.33 47.83 53.73 52.78 65.38 55.00 55.88 64.29 60.00 64.71 62.50 60.00 62.50 70.00 88.89 47.62 53.33 57.89 65.62 K intron_retention Mmp1,E_chr2R_20560380_20562585,I_chr2R_20564123_20565214,I_chr2R_20569965_20572193 chr2R - chr2R_20559830_20562585 chr2R_20559829_20559830;chr2R_20562585_20562586 chr2R_20559732_20559829;chr2R_20562586_20562664 91.80 91.80 93.68 95.52 90.00 93.69 92.04 96.47 95.50 67.06 86.54 93.79 87.18 93.85 96.63 94.29 93.06 92.86 95.83 95.03 96.88 96.26 90.64 89.51 90.55 95.59 93.65 74.81 89.12 90.79 99.20 89.04 87.68 93.33 88.00 91.94 91.41 90.74 91.70 87.03 87.39 95.14 92.31 94.92 91.49 90.80 89.71 86.14 91.76 92.55 93.98 89.02 91.35 92.70 95.70 91.60 89.22 90.11 K intron_retention RI_chrX_8468338_8469380,I_chrX_8468338_8477573,CG12065,I_chrX_8469524_8477579,CE_chrX_8469528_8477573 chrX + chrX_8468441_8477573 chrX_8468440_8468441;chrX_8477573_8477574 chrX_8468351_8468440;chrX_8477574_8477673 19.29 12.00 35.00 12.50 25.00 19.05 38.10 23.81 23.33 15.79 NA 30.56 0.00 16.00 33.33 25.93 23.53 9.52 NA 17.95 30.77 10.47 14.29 28.12 37.04 47.37 43.24 40.00 15.49 13.04 23.81 19.05 21.74 29.17 12.00 45.45 24.24 17.24 12.77 33.33 33.33 28.57 NA 19.35 20.00 18.75 8.89 34.62 17.65 16.00 16.22 19.23 17.24 9.09 18.52 16.67 11.76 24.39 K intron_retention CG31038,I_chr3R_25705533_25722419,I_chr3R_25727788_25727905 chr3R + chr3R_25705533_25723021 chr3R_25705532_25705533;chr3R_25723021_25723022 chr3R_25705433_25705532;chr3R_25723022_25723367 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 3.85 0.00 NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 5.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention I_chr2L_13965397_13965694,RI_chr2L_13967695_13967746,nimB4 chr2L - chr2L_13969445_13969618 chr2L_13969444_13969445;chr2L_13969618_13969619 chr2L_13968897_13969444;chr2L_13969619_13969964 97.22 94.44 100.00 100.00 100.00 100.00 100.00 97.06 97.22 NA 94.44 91.43 96.43 100.00 100.00 96.00 94.12 94.74 100.00 100.00 100.00 92.86 80.00 NA NA 84.62 91.67 NA 100.00 91.67 66.67 100.00 100.00 100.00 NA 90.91 87.50 100.00 93.33 88.24 94.12 96.43 92.86 NA 93.75 100.00 100.00 100.00 93.55 92.31 100.00 NA 100.00 NA 100.00 100.00 97.22 98.61 K alternative_donor CG9350,I_chr2R_16913113_16913165 chr2R + chr2R_16913109_16913165 chr2R_16913113_16913165 chr2R_16913166_16913260;chr2R_16913013_16913108 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 K intron_retention I_chr3L_1866804_1867140,CG13924 chr3L + chr3L_1870086_1870146 chr3L_1870085_1870086;chr3L_1870146_1870147 chr3L_1869858_1870085;chr3L_1870147_1871564 68.34 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 50.00 NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA 70.00 88.89 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA K alternative_donor CG40191,I_chr2RHet_391475_391828,I_chr2RHet_392279_392824 chr2RHet + chr2RHet_391004_391180;chr2RHet_391127_391180 chr2RHet_390972_391180 chr2RHet_391181_391278;chr2RHet_390957_390971 0.00 0.00 9.09 0.00 9.09 0.00 0.00 0.00 3.85 NA 0.00 0.00 0.00 0.00 7.69 0.00 0.00 12.50 0.00 5.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 K intron_retention CG11266,RI_chr2L_7033019_7033182,RI_chr2L_7033019_7034180,RI_chr2L_7033019_7034764,I_chr2L_7034274_7034764,I_chr2L_7034274_7035406,RI_chr2L_7034911_7035074,I_chr2L_7051093_7051366 chr2L + chr2L_7033019_7035406 chr2L_7033018_7033019;chr2L_7035406_7035407 chr2L_7032919_7033018;chr2L_7035407_7035506 35.29 30.36 36.11 19.61 43.59 50.00 36.17 41.18 38.83 20.37 37.04 38.27 45.45 52.17 40.00 42.86 46.43 32.50 36.67 35.24 37.04 23.86 39.34 42.25 32.31 24.39 35.85 25.64 13.95 20.43 48.94 22.03 10.00 39.62 29.63 33.33 37.97 37.50 37.88 29.01 13.04 30.10 48.28 35.29 14.66 23.76 28.07 17.69 44.16 29.17 45.00 33.33 29.03 42.31 51.52 29.17 28.26 13.10 K intron_retention SF1 chr3R + chr3R_13368213_13369221 chr3R_13368212_13368213;chr3R_13369221_13369222 chr3R_13368137_13368212;chr3R_13369222_13369374 22.83 25.00 21.74 13.04 20.51 17.02 25.45 21.05 21.28 40.54 21.43 31.65 37.04 19.15 23.53 21.28 28.95 18.18 23.64 24.05 22.22 23.38 21.18 26.98 20.51 53.33 23.21 24.44 17.31 21.54 20.00 26.00 19.35 26.23 22.64 20.34 34.00 26.67 24.64 29.76 19.05 19.05 24.32 28.81 19.19 22.11 19.77 22.83 26.61 19.18 28.92 23.08 18.18 23.88 17.65 22.22 23.33 26.50 K jcn_only_AA RpS27 chr3R - chr3R_21072088_21072169 chr3R_21072104_21072169 chr3R_21072170_21072238;chr3R_21072035_21072087 100.00 99.99 100.00 99.98 100.00 100.00 100.00 99.98 99.97 100.00 100.00 100.00 99.93 100.00 99.97 100.00 99.96 99.93 99.92 99.98 99.96 100.00 100.00 99.99 100.00 99.96 99.98 99.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.97 99.96 100.00 100.00 100.00 100.00 100.00 99.93 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.99 100.00 K intron_retention plx,noncoding_14842 chr3R + chr3R_1511993_1512762 chr3R_1511992_1511993;chr3R_1512762_1512763 chr3R_1511864_1511992;chr3R_1512763_1512877 72.73 NA NA 72.73 NA NA 77.78 NA 76.47 NA NA 71.43 NA NA NA 88.89 NA NA 66.67 NA NA 100.00 90.00 NA NA NA NA NA 88.89 NA NA NA 88.89 71.43 NA NA NA NA NA 69.23 NA 58.82 NA NA NA NA NA 64.29 69.23 NA NA NA NA NA 76.92 NA NA 50.00 K cassette unk,I_chr3R_18980963_18981530 chr3R - chr3R_18980690_18981530;chr3R_18980693_18981530 chr3R_18980690_18980853,chr3R_18980693_18980853;chr3R_18980963_18981530 chr3R_18980854_18980962 chr3R_18980567_18980689;chr3R_18981531_18981630 9.09 9.68 10.71 17.50 10.53 8.33 0.00 11.76 9.30 5.88 8.33 6.06 13.04 11.76 10.71 16.67 10.00 9.52 15.00 9.80 8.00 11.54 7.84 11.43 3.12 8.00 4.17 12.50 5.71 6.67 0.00 6.67 15.38 9.68 6.67 6.45 2.63 4.17 1.85 9.52 6.25 11.63 5.88 10.81 NA 11.11 9.38 NA 8.33 9.09 5.36 11.54 5.00 4.17 14.29 NA 4.00 NA K jcn_only_AA CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_239517_240516 chr4_240423_240516 chr4_240517_240654 0.00 0.00 0.00 1.18 0.00 1.16 0.81 0.00 0.36 3.57 1.28 0.00 1.10 1.09 0.00 0.00 1.04 14.29 0.00 0.35 1.12 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.68 0.00 0.87 0.00 1.37 0.00 0.00 0.00 0.00 1.53 2.86 0.00 2.22 0.00 3.77 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Arp8,mnb chrX - chrX_17754687_17754754 chrX_17754686_17754687;chrX_17754754_17754755 chrX_17754101_17754686;chrX_17754755_17754846 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 7.41 6.25 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K jcn_only_AA CG30372,coilin,I_chr2R_4012973_4013037,RI_chr2R_4012976_4013037 chr2R - chr2R_4012979_4013037;chr2R_4012973_4013037 chr2R_4012976_4013037 chr2R_4013038_4013137;chr2R_4012876_4012972 16.40 15.62 23.08 10.81 19.05 22.73 13.64 13.64 15.00 NA 15.00 23.68 17.39 NA 22.73 12.20 25.00 13.64 13.04 14.63 19.05 NA 21.43 4.55 21.74 12.50 16.13 NA NA 15.38 15.91 NA 7.69 13.95 20.00 NA 20.83 NA NA 27.03 5.00 20.41 NA 23.53 24.00 9.52 34.15 NA 7.14 24.00 20.00 17.39 NA NA 15.38 16.67 25.00 9.68 K intron_retention CG5986,CG5991 chr3R + chr3R_19874150_19874207 chr3R_19874149_19874150;chr3R_19874207_19874208 chr3R_19873835_19874149;chr3R_19874208_19874843 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA 0.00 0.00 NA NA 6.90 NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 4.00 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 K alternative_acceptor Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19545152_19547918 chr2R_19545152_19547916 chr2R_19545126_19545151;chr2R_19547919_19547942 100.00 NA NA 94.44 NA NA 100.00 NA 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA K intron_retention CG6018 chr2R + chr2R_18437760_18437824 chr2R_18437759_18437760;chr2R_18437824_18437825 chr2R_18437594_18437759;chr2R_18437825_18439906 0.00 6.67 NA 0.00 NA 11.76 4.35 0.00 0.00 NA NA 8.33 0.00 NA 0.00 7.69 NA NA NA 6.45 NA 19.05 5.88 NA NA NA 6.67 NA 31.25 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 4.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 K intron_retention Arpc3A,F_chr3R_11660548_11660649 chr3R + chr3R_11660494_11660634 chr3R_11660493_11660494;chr3R_11660634_11660635 chr3R_11660448_11660493;chr3R_11660635_11660808 2.84 0.00 7.41 7.06 0.00 0.00 4.44 0.00 0.00 NA 0.00 2.86 0.00 2.44 5.56 2.90 0.00 0.00 5.41 5.80 0.00 7.50 2.35 0.00 8.33 8.00 5.56 0.00 4.35 5.00 15.79 0.00 0.00 7.25 0.00 13.79 0.00 4.55 7.41 3.92 14.29 1.69 0.00 2.86 0.00 6.15 3.23 0.00 2.90 4.17 2.70 0.00 0.00 4.84 4.88 2.82 2.20 0.00 K jcn_only_AD CG7530,I_chr3R_10556352_10557136,eff chr3R - chr3R_10556352_10557105;chr3R_10556352_10557148;chr3R_10556352_10557126;chr3R_10556352_10557198 chr3R_10556352_10557130 chr3R_10556252_10556351;chr3R_10557199_10557231 69.75 76.52 60.75 67.07 67.65 79.17 53.66 67.26 69.16 66.67 68.42 70.75 70.51 65.12 56.31 64.17 74.44 68.42 57.14 65.37 63.29 NA 72.31 61.62 74.42 69.05 56.06 71.43 67.31 72.73 79.27 71.70 73.00 74.84 71.88 44.74 77.05 61.90 65.25 62.37 68.18 67.21 73.86 68.18 73.27 64.19 77.50 75.30 70.77 68.66 73.68 80.88 74.57 70.97 74.34 70.33 75.86 72.53 K intron_retention Khc,EI_chr2R_12157759_12157824 chr2R - chr2R_12157759_12157824 chr2R_12157758_12157759;chr2R_12157824_12157825 chr2R_12157659_12157758;chr2R_12157825_12157843 17.73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 27.78 NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Neu3 chr3R - chr3R_10494718_10494778 chr3R_10494717_10494718;chr3R_10494778_10494779 chr3R_10494588_10494717;chr3R_10494779_10496141 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 1.33 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.99 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rip11,E_chrX_18532733_18533695,RI_chrX_18530353_18530870,RI_chrX_18544139_18544185 chrX - chrX_18531820_18533496 chrX_18531819_18531820;chrX_18533496_18533497 chrX_18531668_18531819;chrX_18533497_18534230 47.04 49.27 53.36 57.43 52.78 55.90 46.67 48.70 44.54 42.62 46.94 50.23 43.86 52.10 47.88 58.43 42.21 49.00 44.83 50.99 45.79 57.71 50.18 46.36 46.38 47.35 47.04 46.75 39.18 43.54 53.23 41.13 37.28 50.77 48.02 46.08 44.64 48.34 52.24 40.46 37.10 49.90 47.06 35.25 39.35 38.46 50.90 39.52 49.44 54.63 48.18 45.75 39.68 48.17 47.89 46.89 37.24 28.92 K intron_retention stc chr2L + chr2L_15114214_15114311 chr2L_15114213_15114214;chr2L_15114311_15114312 chr2L_15114049_15114213;chr2L_15114312_15115753 84.96 88.89 NA NA NA NA 71.43 81.82 73.33 90.91 NA 83.33 NA NA NA NA NA NA NA 69.23 NA 90.00 85.71 92.86 92.86 NA 96.55 88.46 90.32 84.21 60.00 81.82 82.61 72.73 72.73 94.12 93.75 90.00 94.74 88.64 77.78 66.67 NA 88.46 78.57 70.83 88.89 77.78 66.67 91.67 90.48 69.23 100.00 88.89 60.00 88.89 76.47 72.00 K alternative_acceptor CG4747 chr2L + chr2L_10007179_10007254 chr2L_10007179_10007251 chr2L_10006908_10007178;chr2L_10007255_10007341 13.10 9.94 14.47 15.20 14.29 12.30 14.10 11.62 14.07 15.22 12.30 14.45 12.95 14.05 12.80 12.82 11.54 15.69 10.95 11.84 13.01 9.20 13.91 12.50 10.66 15.24 14.04 7.41 11.97 11.83 15.08 12.39 13.11 12.45 14.29 17.42 11.54 14.55 17.03 13.31 13.10 12.67 14.52 13.75 11.33 14.04 10.32 11.34 14.56 14.44 10.74 14.29 18.10 13.64 14.14 11.63 11.92 12.68 K jcn_only_AA scf,CG9149,CG2469 chr3L + chr3L_1299201_1299321 chr3L_1299201_1299318 chr3L_1298684_1299200;chr3L_1299322_1300389 99.91 99.83 99.93 99.93 99.82 100.00 99.78 99.94 99.89 99.65 99.92 99.89 99.74 100.00 99.87 99.86 100.00 99.91 99.92 99.90 99.91 99.90 100.00 99.79 99.86 99.91 100.00 99.89 100.00 99.78 99.68 100.00 99.97 99.95 99.89 99.91 99.88 100.00 99.88 99.90 99.95 99.87 100.00 100.00 99.92 100.00 99.93 99.87 99.83 99.82 100.00 100.00 99.95 99.74 100.00 100.00 99.95 99.92 K jcn_only_AD Cdk4,RI_chr2R_12471503_12471656 chr2R + chr2R_12467202_12468346;chr2R_12467241_12468346;chr2R_12467275_12468346;chr2R_12467474_12468346;chr2R_12467225_12468346;chr2R_12467227_12468346;chr2R_12467261_12468346;chr2R_12467039_12468346 chr2R_12467432_12468346 chr2R_12468347_12468520;chr2R_12467030_12467038 58.75 59.26 57.89 51.11 NA 44.00 67.74 68.97 51.28 NA 40.00 33.33 52.63 64.52 51.35 51.92 65.38 45.45 52.38 58.25 45.83 64.52 70.00 66.67 NA 45.45 61.90 NA NA NA 54.84 NA 45.00 54.24 NA 73.91 55.56 NA NA 65.00 NA 55.56 NA NA 66.67 83.33 NA NA 52.17 68.97 76.92 66.67 NA NA 72.41 78.57 79.31 64.52 K jcn_only_AA CG17271,I_chr3R_16645217_16645392,RI_chr3R_16647104_16647149 chr3R - chr3R_16645217_16646371 chr3R_16646166_16646371 chr3R_16646372_16646520;chr3R_16645117_16645216 100.00 100.00 100.00 98.59 100.00 98.28 100.00 100.00 98.21 100.00 100.00 100.00 100.00 97.44 100.00 98.55 100.00 100.00 100.00 100.00 100.00 97.12 100.00 100.00 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 98.73 100.00 98.08 100.00 100.00 100.00 100.00 97.73 99.10 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 98.73 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD ena chr2R + chr2R_15029330_15029711;chr2R_15029276_15029711 chr2R_15029352_15029711 chr2R_15029712_15029859;chr2R_15029150_15029275 0.00 NA 5.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 1.59 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 3.33 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 NA K intron_retention Apc chr3R - chr3R_24662408_24662620 chr3R_24662407_24662408;chr3R_24662620_24662621 chr3R_24662269_24662407;chr3R_24662621_24666547 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mbl,CEI_chr2R_13153717_13238598,I_chr2R_13163569_13203579 chr2R + chr2R_13163569_13238598 chr2R_13163568_13163569;chr2R_13238598_13238599 chr2R_13163469_13163568;chr2R_13238599_13238698 11.25 14.29 NA 14.29 NA 25.00 36.84 25.93 10.00 0.00 NA 37.50 NA 41.67 25.00 33.33 NA NA NA 34.62 NA 0.00 0.00 0.00 0.00 NA 12.50 NA 0.00 NA NA NA 0.00 24.00 6.67 6.67 5.88 NA 13.33 3.70 NA 20.51 NA 4.76 NA NA NA 0.00 25.00 NA 5.56 NA NA NA NA NA NA NA K intron_retention ced-6,I_chr2R_5324717_5324924,I_chr2R_5328640_5328696 chr2R - chr2R_5323499_5323555 chr2R_5323498_5323499;chr2R_5323555_5323556 chr2R_5323093_5323498;chr2R_5323556_5323797 0.22 0.00 0.51 0.44 0.00 0.00 0.17 0.40 0.42 0.00 0.00 0.41 0.29 0.00 0.83 0.34 0.00 0.22 0.00 0.54 0.00 0.28 0.17 0.74 0.00 0.73 0.91 1.50 0.48 0.00 0.27 0.00 0.00 0.55 0.55 0.26 0.00 0.22 0.16 0.22 0.00 0.49 0.27 0.18 0.00 0.00 0.22 0.39 0.70 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.28 0.18 K intron_retention Mitf,I_chr4_1225890_1225947 chr4 + chr4_1225377_1225433 chr4_1225376_1225377;chr4_1225433_1225434 chr4_1225369_1225376;chr4_1225434_1225675 3.67 NA NA 9.52 NA NA 18.52 0.00 5.56 NA NA 0.00 NA 4.76 NA 0.00 NA NA 5.26 3.33 NA NA NA NA NA NA NA NA NA NA 7.14 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 4.00 NA 0.00 NA NA NA NA NA NA NA K jcn_only_AA RnrS,I_chr2R_7872603_7872720 chr2R - chr2R_7872573_7872720 chr2R_7872603_7872720 chr2R_7872721_7872820;chr2R_7872503_7872572 0.20 0.39 1.20 0.00 0.00 0.43 0.96 0.00 0.16 0.00 0.00 0.46 0.00 0.50 0.36 0.00 0.38 1.43 0.00 0.55 0.00 0.00 0.00 0.00 3.41 1.23 0.00 0.00 0.00 0.00 0.44 0.00 0.48 0.20 0.63 0.85 0.00 0.72 0.00 0.86 0.00 0.64 1.89 0.00 0.80 0.59 0.90 1.16 0.32 0.63 0.00 0.00 0.00 0.50 0.00 1.02 0.00 0.00 K jcn_only_AA CG15747 chrX + chrX_13234461_13234550 chrX_13234461_13234519 chrX_13234198_13234460;chrX_13234551_13235028 87.10 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 87.10 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG15445,REI_chrX_20988432_20988485,RI_chrX_20988432_20988489,REI_chrX_20988439_20988489,I_chrX_20988439_20988552 chrX + chrX_20988439_20988489 chrX_20988439_20988485 chrX_20988339_20988438;chrX_20988490_20988585 62.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA 60.00 50.00 NA NA NA NA NA NA NA NA 65.12 K jcn_only_AA Plip chr3R + chr3R_19585018_19585082 chr3R_19585018_19585079 chr3R_19584949_19585017;chr3R_19585083_19585146 100.00 98.68 100.00 100.00 100.00 100.00 98.53 100.00 100.00 100.00 100.00 99.06 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.45 100.00 100.00 100.00 98.70 99.07 100.00 100.00 100.00 98.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.23 K intron_retention I_chrX_13751182_13777268,mamo,C_chrX_13795677_13808662 chrX - chrX_13763739_13764352 chrX_13763738_13763739;chrX_13764352_13764353 chrX_13763582_13763738;chrX_13764353_13764436 35.50 NA 14.29 50.00 NA NA 43.48 41.67 27.27 NA NA 35.71 47.06 31.25 40.00 47.62 NA NA 47.37 25.64 NA NA 17.65 37.50 NA 47.06 40.00 NA NA NA 30.77 NA NA 41.38 NA 33.33 NA NA 18.75 33.33 NA 22.58 35.29 33.33 NA NA NA NA 23.08 NA 5.56 35.71 NA NA 43.75 NA NA NA K intron_retention trbd,hyd chr3R - chr3R_5540887_5540945 chr3R_5540886_5540887;chr3R_5540945_5540946 chr3R_5540344_5540886;chr3R_5540946_5541176 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 K intron_retention retm,I_chr2L_6451015_6451364,I_chr2L_6459995_6460559,I_chr2L_6464140_6465326 chr2L - chr2L_6451015_6451617 chr2L_6451014_6451015;chr2L_6451617_6451618 chr2L_6450915_6451014;chr2L_6451618_6451736 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 6.25 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG1646,RI_chr3R_24638209_24638280,I_chr3R_24641816_24641874 chr3R + chr3R_24637877_24638116;chr3R_24637877_24637948 chr3R_24637877_24637958 chr3R_24637841_24637876;chr3R_24638117_24638208 3.12 4.44 4.11 7.55 3.64 0.00 11.54 6.85 2.44 0.00 4.92 0.75 7.50 6.12 4.05 3.33 2.00 3.03 0.00 4.07 3.33 8.47 0.00 6.15 4.08 10.53 6.82 5.56 2.41 2.33 4.40 2.35 2.53 0.00 6.00 16.07 2.38 1.61 6.02 1.80 0.00 1.43 4.26 2.67 3.45 1.33 1.56 0.00 1.37 2.70 9.68 3.80 0.00 3.12 2.13 2.22 4.17 1.23 N jcn_only_AD CG17255,I_chrX_10366177_10366615,RI_chrX_10366177_10367270 chrX - chrX_10366177_10367360;chrX_10366177_10367201;chrX_10366177_10367270;chrX_10366177_10368085;chrX_10366177_10366615 chrX_10366177_10367458 chrX_10366077_10366176;chrX_10368086_10368118 1.00 0.00 0.00 0.00 1.18 0.00 0.68 1.58 0.00 1.10 0.00 1.25 1.79 1.60 1.92 1.73 0.00 4.26 1.31 0.51 2.25 0.56 2.38 1.44 1.41 0.00 0.85 0.00 0.70 2.31 0.00 0.00 0.79 1.05 2.52 2.04 2.19 1.12 1.00 0.51 0.00 0.41 0.00 1.55 1.25 0.00 1.85 2.37 2.34 1.41 2.08 0.00 1.64 0.00 0.60 0.00 0.00 0.62 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2389073;chrX_2389272_2389644;chrX_2389762_2393243 chrX_2387584_2387709;chrX_2388437_2388670;chrX_2389074_2389271;chrX_2389645_2389761 chrX_2387149_2387248;chrX_2393244_2393291 20.00 NA NA NA NA NA NA 20.00 28.57 NA NA 7.69 NA NA NA NA NA NA 20.00 20.00 NA NA NA NA NA NA NA NA NA NA NA NA 12.50 20.00 NA 4.35 11.11 NA NA 12.50 NA 33.33 NA 28.57 NA NA NA 28.57 28.57 NA NA NA NA NA 40.00 NA NA NA K alternative_acceptor CycD,I_chrX_15803256_15803313 chrX - chrX_15801825_15801891 chrX_15801833_15801891 chrX_15801892_15801960;chrX_15801764_15801824 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 96.55 97.22 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 95.83 100.00 98.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 97.22 100.00 98.61 K intron_retention I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17190715_17190859 chr3R_17190714_17190715;chr3R_17190859_17190860 chr3R_17190579_17190714;chr3R_17190860_17190927 12.91 NA NA NA NA NA NA 15.38 12.50 NA NA NA NA NA NA 25.00 NA NA NA NA NA 0.00 NA 13.33 NA NA NA NA 16.67 NA 4.00 NA NA NA NA NA NA NA NA 5.26 NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA K intron_retention Mpcp chr3L + chr3L_14530803_14531103 chr3L_14530802_14530803;chr3L_14531103_14531104 chr3L_14530797_14530802;chr3L_14531104_14531521 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chrX_8468338_8477573,CG12065,I_chrX_8469524_8477579,CE_chrX_8469528_8477573 chrX + chrX_8469524_8477573 chrX_8469523_8469524;chrX_8477573_8477574 chrX_8469428_8469523;chrX_8477574_8477673 0.00 0.00 0.36 0.00 0.42 0.00 0.26 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.29 0.38 0.00 0.00 0.00 0.00 0.69 0.00 0.62 0.96 0.00 0.79 1.90 0.87 0.00 0.00 0.00 0.36 0.47 0.00 0.00 0.50 0.35 0.59 0.60 0.00 0.39 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.28 K jcn_only_AA CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_243585_244182;chr4_243657_244182;chr4_243639_244182 chr4_243673_244182 chr4_244183_244282;chr4_243557_243584 0.00 0.00 2.70 0.00 0.00 0.00 0.00 1.98 0.00 NA NA 1.09 1.49 0.00 0.00 1.67 0.00 NA 0.00 0.00 0.00 6.06 0.00 0.00 NA 0.00 0.00 NA NA 0.00 2.06 0.00 NA 1.96 0.00 NA NA NA NA 0.00 NA 1.20 0.00 3.70 NA 0.00 0.00 NA 0.79 0.00 0.00 NA NA 0.00 1.79 4.55 2.94 9.09 K alternative_donor Mtch,E_chr3L_185249_186012,I_chr3L_185367_185925 chr3L + chr3L_185740_185925 chr3L_185865_185925 chr3L_185926_186025;chr3L_185377_185739 97.56 98.23 98.41 94.79 96.72 98.08 98.97 95.74 95.76 98.41 97.92 98.60 95.12 97.78 98.51 94.59 97.73 100.00 98.11 96.02 94.00 94.02 96.17 96.09 96.00 97.92 98.59 99.11 90.10 92.94 98.31 96.30 97.17 96.84 97.40 95.88 98.34 97.18 97.89 97.32 96.12 97.44 92.00 98.40 99.17 99.34 97.83 97.56 97.26 98.55 97.66 97.98 98.33 97.42 93.94 97.48 98.21 99.07 K intron_retention CG8520,I_chr2R_8312580_8312637 chr2R + chr2R_8312274_8312327 chr2R_8312273_8312274;chr2R_8312327_8312328 chr2R_8311671_8312273;chr2R_8312328_8312579 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 10.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 4.76 0.00 0.00 0.00 0.00 0.00 K intron_retention kis,RI_chr2L_231035_231947,RI_chr2L_242745_242800,I_chr2L_242926_250756 chr2L - chr2L_216276_216344 chr2L_216275_216276;chr2L_216344_216345 chr2L_216077_216275;chr2L_216345_216573 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG1240,I_chr3L_2767143_2767236 chr3L + chr3L_2767143_2767236 chr3L_2767143_2767216 chr3L_2767043_2767142;chr3L_2767237_2767336 100.00 99.24 100.00 99.33 98.73 100.00 99.13 99.30 100.00 100.00 98.72 99.51 100.00 100.00 100.00 100.00 98.77 100.00 100.00 99.56 99.08 100.00 100.00 100.00 100.00 99.19 100.00 100.00 98.72 100.00 100.00 100.00 100.00 99.33 100.00 100.00 100.00 99.06 98.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.47 100.00 99.22 98.82 100.00 99.31 99.19 100.00 100.00 100.00 K cassette UGP,CRE_chr3L_9346329_9346828,I_chr3L_9346335_9346837 chr3L - chr3L_9346329_9346837 chr3L_9346329_9346612;chr3L_9346619_9346837 chr3L_9346613_9346618 chr3L_9346235_9346328;chr3L_9346838_9346928 2.27 5.56 0.00 5.00 3.23 4.00 2.82 2.13 4.17 0.00 0.00 1.72 0.00 0.00 2.94 2.17 3.23 3.23 3.23 5.66 0.00 5.88 2.86 3.45 4.76 0.00 2.17 0.00 5.00 0.00 4.17 NA 0.00 2.27 NA 0.00 0.00 0.00 0.00 0.00 NA 1.72 0.00 0.00 0.00 12.00 15.79 3.85 3.77 0.00 10.71 0.00 7.69 NA 2.13 3.57 9.09 6.67 K alternative_donor blw,I_chr2R_18686935_18687400,I_chr2R_18687257_18687400 chr2R + chr2R_18686775_18687400 chr2R_18687257_18687400 chr2R_18687401_18687500;chr2R_18686499_18686774 0.22 0.00 0.36 0.32 0.00 0.34 0.39 0.27 0.20 0.35 0.50 0.16 0.56 0.43 0.28 0.34 0.00 1.72 0.48 0.14 0.41 0.46 0.22 0.22 0.00 0.00 0.56 0.55 0.25 0.00 0.31 0.00 0.28 0.22 0.29 0.23 0.17 0.00 0.18 0.16 0.27 0.15 0.00 0.21 0.17 0.12 0.22 0.10 0.17 0.68 0.42 0.00 0.00 0.00 0.00 0.22 0.19 0.00 K jcn_only_AA RI_chr3L_19787260_19787323,Ir76a,RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19795029_19795090;chr3L_19795029_19795086 chr3L_19795029_19795077 chr3L_19795020_19795028;chr3L_19795091_19795214 9.09 NA NA NA NA NA NA 13.64 9.09 NA NA NA NA NA NA NA NA NA NA 4.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.85 NA NA NA NA NA NA 15.38 NA NA NA NA NA NA NA NA NA K intron_retention CG10362,cac chrX - chrX_11821290_11821354 chrX_11821289_11821290;chrX_11821354_11821355 chrX_11821046_11821289;chrX_11821355_11821899 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 4.35 NA NA NA NA NA NA NA NA NA K intron_retention Cyp12a5,noncoding_17701,Cyp12a4 chr3R + chr3R_14959603_14962223 chr3R_14959602_14959603;chr3R_14962223_14962224 chr3R_14959226_14959602;chr3R_14962224_14962285 1.37 0.00 0.00 2.78 0.00 2.38 0.00 3.12 7.58 NA 0.00 2.94 6.06 5.56 3.57 4.35 0.00 5.41 2.13 4.30 0.00 NA 0.00 0.00 0.00 2.70 8.33 NA NA 0.00 6.52 0.00 0.00 1.37 0.00 NA 0.00 0.00 0.00 6.06 6.67 6.49 0.00 3.03 0.00 10.34 0.00 6.06 7.50 0.00 5.71 0.00 NA 12.50 5.77 0.00 0.00 0.00 K alternative_donor gpp,I_chr3R_2271795_2272181,CG33324 chr3R + chr3R_2270033_2272181 chr3R_2271795_2272181 chr3R_2272182_2272281;chr3R_2269544_2270032 21.21 22.22 19.35 25.81 11.63 16.67 20.31 32.08 21.36 11.76 21.43 29.63 52.38 25.71 14.29 31.03 28.00 13.16 31.25 23.08 25.00 5.88 21.33 23.91 13.04 19.23 17.86 17.07 9.26 23.40 30.43 22.73 24.24 25.00 20.00 18.18 10.00 13.95 8.82 13.64 27.27 16.25 29.63 16.39 9.26 25.00 15.00 28.21 29.31 18.84 15.94 20.00 22.22 15.79 24.32 21.21 19.51 29.41 K intron_retention Acf1,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27624591_27624656 chr3R_27624590_27624591;chr3R_27624656_27624657 chr3R_27624428_27624590;chr3R_27624657_27625095 0.00 0.00 0.00 3.03 0.00 0.00 2.17 1.27 1.61 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 1.12 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.88 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 1.96 0.00 0.00 4.30 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 1.90 K alternative_acceptor Arc-p34 chr2L + chr2L_20422237_20422301 chr2L_20422237_20422298 chr2L_20422145_20422236;chr2L_20422302_20422411 0.00 0.00 0.00 0.21 0.00 0.00 0.29 0.18 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.15 0.00 0.00 0.33 0.12 0.00 0.00 0.00 0.31 0.00 0.00 1.42 0.51 1.06 0.00 0.00 0.00 0.26 0.18 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.48 0.00 0.23 0.31 0.00 0.00 0.28 0.00 0.00 0.42 0.00 0.00 0.27 0.27 0.19 0.10 K multi_cassette CG42258,I_chrX_12359522_12362282 chrX + chrX_12359522_12370185 chrX_12359522_12369672;chrX_12369874_12369947;chrX_12370031_12370185 chrX_12369673_12369873;chrX_12369948_12370030 chrX_12359422_12359521;chrX_12370186_12370301 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 K intron_retention Mef2,CREFI_chr2R_5809509_5845628,I_chr2R_5814375_5816404,RI_chr2R_5846889_5846948 chr2R - chr2R_5808228_5809114 chr2R_5808227_5808228;chr2R_5809114_5809115 chr2R_5808024_5808227;chr2R_5809115_5809508 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 1.83 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor I_chrX_15223901_15223968,HDAC6,I_chrX_15232958_15233665 chrX + chrX_15232738_15233659;chrX_15232958_15233659 chrX_15232699_15233659 chrX_15233660_15234340;chrX_15232108_15232698 31.82 18.18 27.27 50.00 30.77 27.27 33.33 45.00 32.00 60.00 20.00 23.81 50.00 25.00 28.57 14.29 44.44 46.67 16.67 10.00 14.29 41.38 36.36 27.78 33.33 27.78 38.89 43.75 18.75 38.89 7.14 7.69 38.46 33.33 30.77 50.00 41.03 27.78 36.36 40.62 33.33 32.00 40.00 26.67 26.92 30.00 36.84 19.05 30.43 50.00 31.58 20.00 31.82 36.00 41.18 12.50 36.36 27.78 K alternative_last_exon AP-47,I_chr3R_5385123_5385196,CG9393 chr3R - chr3R_5387724_5387896 chr3R_5387834_5387896 chr3R_5385385_5387723 chr3R_5387735_5387833 chr3R_5387897_5388292 5.26 6.67 0.00 0.00 0.00 0.00 7.69 8.33 5.26 0.00 0.00 5.26 14.29 0.00 0.00 10.00 0.00 0.00 0.00 3.70 0.00 5.56 0.00 0.00 0.00 11.11 6.67 0.00 6.25 0.00 20.00 6.25 8.33 0.00 8.33 0.00 5.26 6.67 0.00 6.67 6.25 9.52 0.00 6.67 7.41 9.09 0.00 10.00 5.26 5.26 6.25 10.00 5.88 6.67 0.00 0.00 4.76 7.41 K intron_retention ssp2,I_chr3L_13964418_13964473 chr3L + chr3L_13958493_13958623 chr3L_13958492_13958493;chr3L_13958623_13958624 chr3L_13958300_13958492;chr3L_13958624_13958730 0.00 0.00 0.00 0.95 0.00 0.00 3.95 2.29 3.17 0.00 0.00 0.91 0.00 0.00 1.72 0.00 0.00 0.00 0.00 1.80 5.13 0.00 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 5.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 1.69 6.67 1.65 0.00 0.00 0.00 0.00 6.90 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Tak1 chrX - chrX_20393069_20393290 chrX_20393068_20393069;chrX_20393290_20393291 chrX_20392655_20393068;chrX_20393291_20393472 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 K intron_retention CG10260 chrX + chrX_2526315_2526376 chrX_2526314_2526315;chrX_2526376_2526377 chrX_2525398_2526314;chrX_2526377_2526565 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 2.70 2.08 0.00 3.23 0.00 0.00 2.60 0.00 3.28 1.94 0.00 0.91 1.27 0.00 3.88 11.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.72 0.00 1.38 0.00 0.00 0.00 0.00 0.00 0.00 1.98 0.00 0.00 1.82 1.67 1.23 0.00 0.00 0.00 0.00 K cassette I_chr3L_1494947_1496080,pUf68,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1500389_1501798;chr3L_1499338_1501798;chr3L_1499880_1501798 chr3L_1500389_1501350,chr3L_1499338_1501350,chr3L_1499880_1501350;chr3L_1501407_1501798 chr3L_1501351_1501406 chr3L_1499043_1499337;chr3L_1501799_1501892 5.62 2.90 3.77 2.70 2.00 5.17 0.00 6.85 6.32 4.88 17.24 5.38 17.14 5.56 4.00 2.90 3.77 2.17 5.26 5.62 11.76 5.66 10.00 6.67 9.76 2.56 6.78 6.12 8.16 4.65 9.52 3.92 7.69 4.12 5.88 5.26 7.58 8.33 7.58 7.69 11.11 5.61 5.66 9.43 3.57 7.14 4.08 7.37 3.85 5.88 5.33 6.00 4.44 5.88 4.48 7.27 3.85 4.23 K cassette Slip1,RI_chr4_684967_689045,I_chr4_685717_686576,RI_chr4_685717_689045,RI_chr4_687548_689045 chr4 + chr4_687559_689755 chr4_687559_689045;chr4_689201_689755 chr4_689046_689200 chr4_686581_687558;chr4_689756_690313 71.05 67.57 68.29 70.73 64.00 80.95 69.09 85.71 73.12 66.67 87.50 70.69 72.73 76.92 71.05 74.29 79.41 62.50 79.17 74.70 76.67 60.61 71.11 69.77 62.96 54.05 63.04 81.25 69.23 72.41 80.00 75.00 76.00 85.71 64.00 52.00 60.53 73.08 60.00 60.78 46.15 73.13 82.14 68.42 55.56 79.31 58.33 76.47 72.94 66.67 81.08 67.86 69.57 65.38 74.47 62.16 74.00 74.07 K intron_retention rump,I_chr3R_5338175_5338299 chr3R - chr3R_5331922_5331979 chr3R_5331921_5331922;chr3R_5331979_5331980 chr3R_5331640_5331921;chr3R_5331980_5333108 0.00 0.00 0.00 1.02 0.00 0.00 1.23 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.61 0.00 0.94 0.00 0.00 0.00 0.00 0.00 1.38 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG14425,Sxl,CG14425_Sxl,CEFI_chrX_6981717_6984166,CEF_chrX_6984538_6992033 chrX - chrX_6979988_6981646 chrX_6980012_6981646 chrX_6981647_6981689;chrX_6979652_6979987 50.00 33.33 46.15 38.46 NA 55.88 30.00 67.74 45.65 NA NA 58.00 27.27 51.72 61.76 52.17 NA 41.38 55.56 43.86 80.95 82.98 34.88 50.00 48.72 68.00 53.33 NA 44.44 45.16 69.88 NA 60.53 48.98 47.06 45.16 NA 45.28 46.00 66.15 NA 55.17 57.14 45.83 55.00 37.50 51.61 59.52 50.91 52.00 45.71 41.67 43.48 60.87 50.00 28.95 NA NA K cassette CG16791 chr3R - chr3R_17149949_17163398 chr3R_17149949_17160248;chr3R_17160491_17163398 chr3R_17160249_17160490 chr3R_17149943_17149948;chr3R_17163399_17163498 95.00 96.00 96.30 93.62 95.45 100.00 100.00 100.00 96.00 100.00 95.00 97.83 94.74 91.67 100.00 94.12 95.83 95.00 94.29 100.00 100.00 65.22 100.00 96.00 93.33 92.00 96.30 83.33 75.00 90.48 93.55 86.96 91.18 97.92 94.74 91.67 95.65 95.00 96.30 91.67 89.47 94.12 95.45 96.00 78.57 96.67 90.48 90.91 95.74 100.00 87.50 100.00 100.00 94.74 96.97 94.74 90.00 95.65 K intron_retention I_chr3L_3223943_3224313,CG11505 chr3L + chr3L_3226194_3226876 chr3L_3226193_3226194;chr3L_3226876_3226877 chr3L_3226139_3226193;chr3L_3226877_3227705 90.91 NA 100.00 90.00 100.00 70.00 100.00 95.65 90.00 NA NA 95.65 93.33 93.75 100.00 90.48 100.00 NA 100.00 93.33 88.89 84.21 76.47 100.00 NA 86.67 100.00 87.50 73.33 87.50 100.00 NA 72.22 95.00 90.91 90.91 87.50 100.00 81.82 81.25 NA 88.89 90.91 92.86 NA NA NA 73.08 100.00 NA 88.89 87.50 NA NA 91.67 NA NA NA K intron_retention CG9947,eIF-2alpha chrX - chrX_16334446_16334689 chrX_16334445_16334446;chrX_16334689_16334690 chrX_16334250_16334445;chrX_16334690_16334958 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.30 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.18 0.00 0.00 0.00 0.18 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.10 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.35 0.38 0.00 0.00 0.00 0.00 0.26 0.00 K intron_retention faf,RI_chr3R_27603474_27603893,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27611305_27611366 chr3R_27611304_27611305;chr3R_27611366_27611367 chr3R_27611154_27611304;chr3R_27611367_27611675 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.45 2.04 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA RI_chrX_502548_513324,CG13366,I_chrX_505719_505889,I_chrX_508729_508806,I_chrX_509727_511477,I_chrX_510004_511407,I_chrX_513176_513324,I_chrX_513519_513631 chrX - chrX_506242_506314 chrX_506245_506314 chrX_506315_506466;chrX_506125_506241 95.03 91.43 95.45 94.29 96.77 NA 89.66 94.44 94.83 88.00 NA 97.83 95.83 NA 96.77 87.10 90.00 NA 100.00 95.24 NA 100.00 89.83 98.18 88.46 100.00 95.35 93.55 NA 94.59 NA 92.31 100.00 92.50 93.10 96.00 89.86 95.24 88.89 100.00 NA 96.00 100.00 96.77 NA 93.75 100.00 88.46 94.64 96.30 100.00 92.00 NA 88.46 100.00 85.71 100.00 NA K alternative_donor scny,I_chr3L_5763034_5768288 chr3L + chr3L_5767947_5768288 chr3L_5768114_5768288 chr3L_5768289_5768388;chr3L_5767514_5767946 58.33 NA 66.67 NA NA 100.00 NA NA 66.67 NA NA 54.55 NA 57.14 80.00 70.00 NA NA NA 60.00 NA 66.67 63.64 87.50 NA 71.43 80.00 87.50 NA NA 55.56 41.67 36.36 62.50 42.86 NA 58.33 NA 50.00 40.00 NA 53.33 NA 57.14 40.00 42.86 NA 18.18 66.67 50.00 62.50 NA 42.86 80.00 54.55 63.64 NA 37.50 K intron_retention DhpD chr3R - chr3R_54144_54201 chr3R_54143_54144;chr3R_54201_54202 chr3R_53870_54143;chr3R_54202_54356 0.00 0.00 0.00 1.61 3.77 0.00 1.85 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 3.05 0.00 0.87 0.80 0.87 2.47 0.00 3.57 0.00 1.32 3.03 0.00 1.61 3.77 0.00 0.00 0.00 0.00 0.00 0.00 3.20 0.00 0.77 0.00 0.00 1.14 3.12 0.00 2.78 1.01 2.06 0.00 3.33 0.00 2.44 0.00 2.25 0.00 0.00 K intron_retention torp4a chrX - chrX_4542616_4542671 chrX_4542615_4542616;chrX_4542671_4542672 chrX_4542539_4542615;chrX_4542672_4542719 100.00 96.77 100.00 100.00 100.00 100.00 98.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG8177,I_chr3L_9773353_9773506,I_chr3L_9773534_9773635,I_chr3L_9774319_9774602 chr3L + chr3L_9773309_9773635 chr3L_9773353_9773635 chr3L_9773636_9773735;chr3L_9773253_9773308 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.81 98.88 100.00 100.00 100.00 100.00 100.00 100.00 98.57 97.73 100.00 100.00 98.85 100.00 98.44 98.46 100.00 97.62 100.00 100.00 100.00 98.81 100.00 100.00 100.00 99.12 100.00 100.00 100.00 98.57 100.00 98.59 99.16 100.00 100.00 100.00 100.00 97.44 100.00 100.00 97.67 98.88 82.61 100.00 100.00 96.77 100.00 98.53 100.00 100.00 100.00 K jcn_only_AA CG30015,I_chr2R_6743814_6744285 chr2R - chr2R_6730353_6730422 chr2R_6730356_6730422 chr2R_6730423_6730486;chr2R_6726619_6730352 100.00 98.77 100.00 98.97 100.00 98.33 98.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.53 98.75 98.15 97.73 100.00 100.00 100.00 100.00 99.11 100.00 100.00 100.00 98.90 100.00 100.00 98.75 98.53 96.72 100.00 99.12 100.00 100.00 100.00 100.00 98.17 99.27 98.97 99.33 98.33 100.00 100.00 99.17 100.00 100.00 99.27 100.00 99.11 100.00 97.14 100.00 98.90 100.00 100.00 98.57 K intron_retention CG15093 chr2R - chr2R_14664344_14664398 chr2R_14664343_14664344;chr2R_14664398_14664399 chr2R_14663385_14664343;chr2R_14664399_14664462 41.89 41.67 41.67 23.53 36.36 NA 30.77 36.84 55.56 NA NA 42.11 NA NA 46.15 NA 33.33 41.67 23.08 47.06 NA NA 40.00 30.00 NA NA 36.36 NA 50.00 NA 53.33 NA 66.67 41.67 46.15 NA 63.64 NA 35.00 42.86 NA 47.37 45.45 10.00 53.85 40.00 50.00 87.50 30.00 NA 46.15 NA 63.64 36.36 41.67 58.33 NA 50.00 K intron_retention cana,CG33695 chr2L + chr2L_11278674_11278754 chr2L_11278673_11278674;chr2L_11278754_11278755 chr2L_11278575_11278673;chr2L_11278755_11279847 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 NA 5.00 0.00 16.67 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.94 0.00 2.94 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon CG14394 chr3R + chr3R_8522022_8522786;chr3R_8522022_8522445 chr3R_8522022_8522175 chr3R_8522787_8523265;chr3R_8522446_8522755 chr3R_8522176_8522382 chr3R_8521845_8522021 20.00 NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor eIF-2beta,RI_chr3L_12519486_12519541 chr3L - chr3L_12519486_12519688;chr3L_12519486_12519596;chr3L_12519486_12519590 chr3L_12519486_12519541 chr3L_12519386_12519485;chr3L_12519689_12519829 0.52 0.45 0.00 0.70 0.00 1.24 1.12 0.00 0.85 1.33 0.00 1.15 0.00 0.76 0.49 0.95 0.76 1.01 0.00 0.74 0.52 0.48 0.93 0.00 2.04 0.51 0.85 1.57 0.65 0.48 1.92 0.00 0.75 0.38 0.57 0.00 0.70 0.00 2.33 0.46 0.84 0.65 0.67 0.32 0.00 1.10 0.39 0.64 0.99 0.93 0.37 0.00 0.39 0.40 0.47 0.00 0.00 0.48 K jcn_only_AA CG17471,RI_chr4_1213397_1214333,RI_chr4_1213397_1216053,RI_chr4_1214248_1214333,I_chr4_1214293_1214333,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1214248_1214333;chr4_1214281_1214333 chr4_1214293_1214333 chr4_1214334_1214402;chr4_1214193_1214247 0.00 1.69 0.00 0.00 0.00 1.79 0.00 0.88 1.75 NA 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 1.28 1.57 0.00 0.00 0.00 0.00 0.00 0.00 2.78 NA 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.86 0.00 0.00 0.00 0.00 1.49 0.00 0.83 0.00 0.00 0.00 0.00 2.27 0.00 2.41 0.00 0.00 K intron_retention Cf2 chr2L - chr2L_4879197_4880377 chr2L_4879196_4879197;chr2L_4880377_4880378 chr2L_4878850_4879196;chr2L_4880378_4880472 13.07 13.79 13.04 13.04 12.00 6.90 38.64 12.20 13.11 NA 0.00 8.16 NA 13.04 0.00 24.14 0.00 16.67 16.67 12.86 12.50 8.16 19.51 33.33 20.00 13.33 18.75 18.52 9.09 8.33 23.81 NA 2.86 20.00 5.00 23.81 14.29 9.09 17.78 8.00 NA 13.73 9.09 8.57 8.33 NA 23.53 0.00 16.95 24.00 20.59 25.00 NA NA 12.50 18.52 29.17 6.67 K intron_retention stck,I_chr3R_4184313_4184380,I_chr3R_4184660_4184730 chr3R + chr3R_4184313_4184370 chr3R_4184312_4184313;chr3R_4184370_4184371 chr3R_4184213_4184312;chr3R_4184371_4184446 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor fws,CG6453 chr2L - chr2L_17480920_17480972;chr2L_17480920_17481149;chr2L_17480920_17480983 chr2L_17480920_17480968 chr2L_17480825_17480919;chr2L_17481150_17481199 50.00 33.33 60.00 50.00 50.00 50.00 58.33 44.44 50.00 NA 60.00 55.56 50.00 40.00 50.00 62.50 66.67 50.00 42.86 54.55 66.67 66.67 NA NA NA 60.00 NA NA NA NA 60.00 100.00 33.33 50.00 NA NA 50.00 NA NA 50.00 NA 45.45 NA NA 50.00 NA NA 40.00 60.00 50.00 NA NA NA NA 75.00 NA 60.00 100.00 K intron_retention CG32626 chrX - chrX_13727065_13728847 chrX_13727064_13727065;chrX_13728847_13728848 chrX_13726937_13727064;chrX_13728848_13729182 3.62 2.30 3.39 6.49 2.04 5.00 5.00 6.52 4.88 5.26 4.65 14.49 12.50 5.00 6.67 8.86 6.12 7.50 6.25 5.00 3.39 2.82 4.72 2.90 3.70 0.00 6.02 3.75 0.00 0.00 7.55 0.00 2.38 6.41 3.45 2.00 6.67 1.00 0.00 1.41 0.00 4.00 5.00 3.10 0.00 2.44 1.49 NA 6.25 2.65 3.54 2.90 6.52 0.00 7.27 2.70 2.94 0.00 K intron_retention CG7337,I_chr2L_1910010_1910066,I_chr2L_1938620_1938887,I_chr2L_1942183_1942233 chr2L + chr2L_1937584_1938507 chr2L_1937583_1937584;chr2L_1938507_1938508 chr2L_1937441_1937583;chr2L_1938508_1938619 0.00 NA 0.00 16.67 NA 0.00 7.02 0.00 8.82 NA 0.00 5.56 NA NA 0.00 5.88 NA 0.00 NA 0.00 0.00 8.00 NA NA NA NA NA 0.00 0.00 NA NA NA 0.00 9.52 NA NA NA NA NA 0.00 NA 5.26 11.76 NA NA NA NA 6.67 0.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention I_chr3L_3151185_3151263,CG32280,CG32278,CG32281 chr3L + chr3L_3169365_3170944 chr3L_3169364_3169365;chr3L_3170944_3170945 chr3L_3169344_3169364;chr3L_3170945_3171106 8.33 9.52 8.00 25.00 8.33 8.33 16.67 12.24 8.97 0.00 3.45 12.90 9.09 5.88 7.69 14.81 13.33 6.25 19.35 10.77 2.94 0.00 5.00 0.00 19.05 11.54 8.11 10.81 12.50 0.00 12.77 0.00 NA 9.43 8.33 NA 0.00 0.00 0.00 15.09 NA 9.20 9.68 10.87 0.00 7.84 3.39 14.29 12.12 6.15 5.26 5.26 6.90 5.00 13.89 3.64 2.50 17.14 K intron_retention CG13384 chr2L + chr2L_8386386_8386486 chr2L_8386385_8386386;chr2L_8386486_8386487 chr2L_8386217_8386385;chr2L_8386487_8387378 12.57 12.84 15.84 14.69 19.46 15.66 17.28 15.90 16.75 7.59 12.82 16.03 17.90 18.78 14.58 16.08 13.07 14.29 15.93 11.85 17.86 7.34 11.28 10.49 12.02 19.08 11.51 9.48 7.96 9.05 19.34 11.81 9.13 16.54 12.20 9.79 9.90 12.57 12.14 9.76 10.32 13.85 18.25 10.15 8.62 12.81 9.62 11.52 14.88 12.12 13.28 11.94 11.86 11.59 16.02 12.57 10.29 8.40 K intron_retention cmet chr2L - chr2L_11266558_11266881 chr2L_11266557_11266558;chr2L_11266881_11266882 chr2L_11262819_11266557;chr2L_11266882_11266899 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention ssp4,I_chr2R_13409412_13410357,RI_chr2R_13409412_13411004,I_chr2R_13409412_13411328,I_chr2R_13409412_13411588,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13408434_13409336 chr2R_13408433_13408434;chr2R_13409336_13409337 chr2R_13408151_13408433;chr2R_13409337_13409405 43.59 45.00 46.34 45.61 44.44 37.50 50.00 52.00 46.51 33.33 52.17 60.53 45.16 38.89 49.09 46.15 55.26 42.31 55.10 41.58 31.43 41.67 40.26 40.00 50.00 58.33 46.51 43.33 45.45 33.33 38.46 48.39 45.45 45.07 52.50 47.22 33.90 27.78 40.00 30.77 37.50 51.04 42.86 43.59 58.06 41.86 43.24 46.15 45.24 34.21 33.33 42.86 60.00 41.03 30.00 39.13 38.24 42.86 K jcn_only_AD CG7272 chr3L + chr3L_15494242_15495936 chr3L_15494361_15495936 chr3L_15495937_15496342;chr3L_15494055_15494241 100.00 99.06 99.39 99.44 100.00 100.00 99.37 98.85 99.57 100.00 100.00 99.56 100.00 100.00 99.32 99.39 100.00 99.09 100.00 100.00 100.00 100.00 99.25 100.00 98.53 100.00 99.05 100.00 98.44 99.15 98.68 100.00 100.00 100.00 98.89 100.00 100.00 100.00 100.00 99.42 100.00 100.00 100.00 100.00 100.00 99.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.07 99.32 100.00 100.00 100.00 K intron_retention Cirl,R_chr2R_4502755_4503407 chr2R + chr2R_4508633_4508697 chr2R_4508632_4508633;chr2R_4508697_4508698 chr2R_4508535_4508632;chr2R_4508698_4510321 0.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32626 chrX - chrX_13727056_13728847 chrX_13727055_13727056;chrX_13728847_13728848 chrX_13726937_13727055;chrX_13728848_13729182 10.81 4.69 6.25 17.39 20.69 15.38 13.64 16.67 14.29 13.95 8.33 18.18 25.00 10.26 21.43 22.22 13.95 15.56 15.79 17.54 13.79 7.50 10.81 9.64 10.87 16.67 10.11 5.00 10.64 3.77 21.88 12.00 7.55 18.46 10.64 8.16 13.08 5.43 5.10 8.77 12.12 10.67 10.00 6.60 8.33 10.00 5.63 26.32 14.93 5.00 7.92 12.77 9.30 6.82 16.67 9.72 7.41 18.18 K intron_retention CG14446 chrX + chrX_6122913_6122980 chrX_6122912_6122913;chrX_6122980_6122981 chrX_6122512_6122912;chrX_6122981_6123339 0.00 6.67 NA 7.69 NA 5.56 0.00 5.71 4.55 NA NA 3.12 NA 0.00 5.56 3.70 0.00 NA NA 0.00 NA 0.00 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 6.67 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K alternative_donor chinmo chr2L + chr2L_1651713_1652774;chr2L_1651412_1652774 chr2L_1651430_1652774 chr2L_1652775_1653511;chr2L_1651300_1651411 10.53 10.53 4.17 10.53 0.00 12.00 8.70 9.26 3.33 0.00 10.00 7.84 10.00 7.69 11.76 11.54 13.64 11.54 0.00 18.87 5.00 0.00 17.86 7.14 12.50 12.50 7.14 8.33 10.00 0.00 3.45 12.50 9.52 14.00 15.79 17.65 0.00 16.67 13.33 9.09 22.22 9.52 12.00 3.57 11.11 13.33 15.38 17.86 9.43 22.22 12.50 0.00 21.43 9.09 18.18 18.18 12.50 6.25 K alternative_last_exon Mvl,E_chr3R_16880765_16881066 chr3R - chr3R_16878968_16881066,chr3R_16879341_16881066;chr3R_16879657_16881066;chr3R_16877965_16881066 chr3R_16880764_16881066 chr3R_16878926_16878967;chr3R_16879584_16879656;chr3R_16877097_16877964 chr3R_16880370_16880763 chr3R_16881067_16881137 4.88 4.00 7.02 5.49 5.13 4.26 6.67 6.67 5.83 0.00 8.57 4.60 8.93 8.00 8.93 10.13 9.52 4.55 7.02 5.77 7.32 2.70 4.92 3.85 5.88 5.26 4.84 25.00 3.57 3.70 4.44 3.39 1.49 6.90 2.27 3.92 3.39 4.88 4.92 5.62 3.12 4.85 7.89 2.86 1.43 2.56 3.39 2.53 5.88 5.26 1.61 5.56 4.44 6.98 8.20 3.85 2.67 0.00 K jcn_only_AD Ssdp,RI_chr3R_14022843_14025255 chr3R - chr3R_14022843_14024928 chr3R_14022843_14024423 chr3R_14022743_14022842;chr3R_14024929_14025096 30.95 NA 53.85 34.38 NA 5.00 57.14 33.33 26.32 NA NA 33.33 NA 28.57 NA 47.06 NA NA 22.73 30.95 NA NA 47.22 36.36 NA NA NA 52.17 NA 22.22 NA NA 10.42 38.10 NA 33.33 37.93 25.00 NA 17.02 NA 22.22 35.00 14.29 NA NA NA 21.74 27.27 NA 37.04 19.05 NA NA NA NA NA 18.52 K jcn_only_AA Srp19,I_chr3L_7340885_7340945 chr3L - chr3L_7340852_7340956 chr3L_7340885_7340956 chr3L_7340957_7341045;chr3L_7340785_7340851 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.81 100.00 98.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.90 100.00 100.00 97.87 100.00 100.00 98.82 100.00 100.00 100.00 98.51 98.75 100.00 100.00 100.00 100.00 100.00 100.00 98.55 100.00 100.00 100.00 100.00 100.00 100.00 99.01 100.00 99.10 98.81 100.00 100.00 100.00 100.00 K intron_retention Cdc37,E_chr3L_1795912_1796499,CG12020 chr3L + chr3L_1795997_1796177 chr3L_1795996_1795997;chr3L_1796177_1796178 chr3L_1795793_1795996;chr3L_1796178_1796837 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG10880,CG15386_CG42371 chr2L - chr2L_2215460_2215514;chr2L_2215454_2215514 chr2L_2215457_2215514 chr2L_2215515_2216288;chr2L_2215021_2215453 0.00 NA NA 0.00 NA NA NA 4.55 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 3.70 NA NA NA NA NA 3.70 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA NA 5.88 2.44 NA 3.12 NA NA NA NA NA NA NA NA NA 0.00 K intron_retention CG15356 chr2L - chr2L_1979203_1979909 chr2L_1979202_1979203;chr2L_1979909_1979910 chr2L_1976910_1979202;chr2L_1979910_1980180 0.00 0.00 NA 7.69 NA NA 0.00 11.76 6.67 NA NA NA NA NA NA 5.88 NA NA NA 9.09 NA 0.00 0.00 0.00 6.67 14.29 NA 5.56 NA 0.00 NA NA 0.00 NA NA 5.26 0.00 NA 8.33 0.00 NA 3.85 NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 NA NA K alternative_acceptor CG17219,RFI_chr2L_3030576_3030666,GABPI chr2L + chr2L_3030576_3030669 chr2L_3030576_3030666 chr2L_3030562_3030575;chr2L_3030670_3030766 71.43 90.91 63.64 55.56 58.33 62.50 47.06 70.83 51.72 NA NA 71.43 81.82 NA 64.29 77.27 63.64 46.15 40.00 66.67 72.73 100.00 84.62 90.00 90.00 84.62 92.31 NA 80.00 50.00 80.95 87.50 63.16 66.67 63.64 NA NA 100.00 87.50 72.22 64.29 51.85 57.14 92.86 70.00 90.00 NA 59.09 64.00 80.00 91.67 75.00 NA 87.50 56.25 91.67 88.89 42.11 K cassette CG12414,I_chr3L_23242363_23255807 chr3L + chr3L_23257465_23271315 chr3L_23257465_23262503;chr3L_23262624_23271315 chr3L_23262504_23262623 chr3L_23257452_23257464;chr3L_23271316_23271520 100.00 NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 90.91 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention TfIIA-S,RI_chr3R_19716550_19716601 chr3R - chr3R_19716550_19716605 chr3R_19716549_19716550;chr3R_19716605_19716606 chr3R_19716450_19716549;chr3R_19716606_19716701 0.00 2.53 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 2.13 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.74 0.70 0.00 0.79 4.17 0.00 2.60 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.68 0.00 0.47 2.17 0.74 0.00 0.00 0.00 0.00 1.64 0.00 1.54 K intron_retention WASp,I_chr3R_24656400_24656715,I_chr3R_24656400_24656880,I_chr3R_24656400_24657416 chr3R - chr3R_24656400_24656940 chr3R_24656399_24656400;chr3R_24656940_24656941 chr3R_24656300_24656399;chr3R_24656941_24656980 88.89 NA NA NA NA NA 100.00 88.89 91.67 NA NA 90.00 NA NA NA NA NA NA NA 80.00 NA 85.00 90.00 NA 90.00 NA NA NA 90.00 NA 72.73 NA 88.89 NA NA 92.31 NA NA NA 76.92 75.00 90.00 NA NA 80.00 63.64 NA 90.91 77.78 NA 100.00 NA NA NA NA NA NA 88.89 K intron_retention CG8777,RI_chr2R_4989921_4989993,Vang chr2R + chr2R_4990156_4990214 chr2R_4990155_4990156;chr2R_4990214_4990215 chr2R_4989994_4990155;chr2R_4990215_4990402 0.00 NA NA 31.58 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 5.56 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 3.85 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA K intron_retention CG12703 chrX + chrX_19645198_19645380 chrX_19645197_19645198;chrX_19645380_19645381 chrX_19644833_19645197;chrX_19645381_19645579 100.00 93.75 92.86 100.00 90.00 88.89 100.00 96.15 96.55 100.00 NA 93.55 100.00 100.00 100.00 100.00 100.00 100.00 NA 95.24 100.00 100.00 100.00 100.00 100.00 NA 93.33 90.00 93.75 100.00 93.33 95.00 100.00 100.00 100.00 88.89 100.00 91.67 100.00 100.00 100.00 96.97 NA 94.12 86.67 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 91.67 90.91 92.86 96.43 K intron_retention CG14778,pck,CG14780 chrX + chrX_1365637_1365690 chrX_1365636_1365637;chrX_1365690_1365691 chrX_1365441_1365636;chrX_1365691_1366350 0.00 0.00 2.13 8.16 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.21 1.38 1.64 1.45 0.00 4.30 7.46 10.61 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.63 1.28 4.88 0.00 0.00 0.00 0.00 4.40 0.00 4.44 2.50 1.00 3.03 0.00 0.00 0.00 0.00 2.78 3.49 0.00 K jcn_only_AA CG16791 chr3R - chr3R_17149940_17160248 chr3R_17149949_17160248 chr3R_17160249_17160421;chr3R_17149849_17149939 88.68 87.50 93.10 82.86 NA NA 89.74 93.33 91.84 NA 95.00 88.68 100.00 83.33 81.82 85.00 85.00 90.00 94.12 82.50 NA NA 76.00 73.91 NA 88.46 80.95 NA NA NA 79.17 NA 96.00 89.58 77.27 NA NA 90.91 94.12 85.19 85.00 86.05 91.30 89.66 NA 87.50 NA 100.00 90.00 90.00 96.77 90.91 80.95 NA 80.00 79.31 NA 100.00 K jcn_only_AD CG3287,I_chr2R_2698891_2699406,I_chr2R_2700203_2700285 chr2R + chr2R_2698891_2699406;chr2R_2699349_2699406;chr2R_2698654_2699406 chr2R_2698681_2699406 chr2R_2699407_2699506;chr2R_2698533_2698653 97.62 97.37 97.87 97.79 94.00 99.03 96.94 98.77 96.60 95.08 97.22 97.92 100.00 99.00 99.27 95.68 96.00 96.10 96.52 98.12 100.00 87.85 95.52 96.08 96.15 98.00 96.12 91.78 96.12 97.96 96.95 96.36 100.00 99.33 98.32 98.11 94.12 98.53 92.65 99.53 100.00 98.69 100.00 96.26 96.74 97.74 94.57 98.62 97.18 98.86 97.10 97.62 97.18 98.57 99.21 98.68 98.21 97.37 K intron_retention Ef1gamma,E_chr3R_25046218_25047549 chr3R + chr3R_25046031_25046151 chr3R_25046030_25046031;chr3R_25046151_25046152 chr3R_25045996_25046030;chr3R_25046152_25046217 0.45 0.19 0.39 0.37 0.43 0.43 0.42 0.36 0.34 0.43 0.20 0.24 0.24 0.36 0.30 0.32 0.21 0.28 0.23 0.42 0.57 2.90 0.46 0.40 0.91 0.64 0.54 0.45 1.47 0.46 0.80 0.68 0.39 0.51 0.46 1.57 0.37 0.45 0.40 0.53 1.10 0.26 0.47 0.45 0.74 0.61 0.29 0.59 0.55 0.57 0.60 0.74 0.48 0.46 0.38 0.27 0.24 0.46 K intron_retention CG12393,CG9135 chr2L + chr2L_6048631_6048693 chr2L_6048630_6048631;chr2L_6048693_6048694 chr2L_6048512_6048630;chr2L_6048694_6048702 52.09 56.25 60.00 70.59 50.00 55.56 56.25 47.83 61.54 NA NA 60.87 50.00 58.33 66.67 62.50 60.00 63.16 56.25 57.69 56.25 65.00 45.45 45.45 NA 47.37 46.15 70.00 NA NA 37.04 NA NA 54.17 NA NA 47.37 NA 47.62 41.67 45.45 45.83 60.00 NA 28.57 41.67 NA 37.50 59.09 42.86 38.89 NA NA NA 60.00 41.67 36.84 46.67 K alternative_acceptor Cf2,I_chr2L_4882802_4882864 chr2L - chr2L_4882802_4882864;chr2L_4882493_4882864 chr2L_4882366_4882864 chr2L_4882865_4882964;chr2L_4881215_4882365 0.00 0.00 14.29 7.14 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.50 5.56 0.00 0.00 5.26 0.00 0.00 12.50 0.00 0.00 3.70 4.55 0.00 7.69 3.12 20.00 0.00 5.56 6.25 0.00 9.09 8.89 0.00 9.09 20.00 0.00 0.00 7.69 12.50 2.70 0.00 0.00 8.33 0.00 0.00 0.00 0.00 11.11 16.67 4.00 K alternative_acceptor drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389400_9390195;chr2R_9389597_9390195;chr2R_9389430_9390195 chr2R_9389714_9390195 chr2R_9390196_9390251;chr2R_9389318_9389399 12.94 9.86 10.26 12.94 9.38 14.29 14.02 12.25 12.80 11.76 13.04 13.22 10.10 11.88 12.84 13.30 11.11 13.58 12.32 13.59 12.82 14.77 13.13 17.11 14.55 11.11 14.14 15.38 10.78 12.36 11.48 11.67 17.97 11.89 12.16 10.26 13.56 13.64 12.96 7.30 16.47 12.71 18.39 18.18 12.28 10.58 19.12 9.22 13.55 17.19 14.29 14.29 13.73 11.36 11.63 15.00 12.94 11.18 K intron_retention CG15347,I_chrX_8353371_8353552,I_chrX_8353371_8354203,I_chrX_8353497_8353552 chrX - chrX_8353416_8354798 chrX_8353415_8353416;chrX_8354798_8354799 chrX_8353397_8353415;chrX_8354799_8354949 10.13 6.67 NA 18.52 NA NA 7.84 10.53 6.67 NA NA 4.55 NA NA NA 12.50 0.00 18.75 14.29 6.25 20.00 7.94 15.38 10.53 20.00 0.00 21.43 32.00 12.50 NA 10.26 NA 0.00 27.27 5.56 7.14 17.65 NA NA 10.53 7.14 17.86 NA 10.00 7.69 0.00 NA NA 18.18 11.76 12.50 0.00 NA NA 0.00 0.00 3.92 0.00 N jcn_only_AD myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_715043_716708;chr4_715043_716482;chr4_715043_716613;chr4_715043_715839 chr4_715043_716322 chr4_714007_715042;chr4_716709_716712 19.77 19.44 10.71 31.43 23.81 16.13 19.77 39.77 21.33 NA 10.53 29.23 21.05 25.45 16.00 33.72 22.41 20.00 25.00 38.03 14.29 NA 21.88 NA NA 17.39 15.62 NA NA 18.52 35.00 NA NA 33.93 NA 14.29 19.23 NA NA 16.98 NA 21.62 17.78 15.79 NA NA NA 12.00 24.19 NA 12.12 22.22 NA NA 19.57 NA NA 14.29 K intron_retention Nap1,I_chr2R_19794052_19794730,I_chr2R_19794246_19794473 chr2R - chr2R_19794246_19794432 chr2R_19794245_19794246;chr2R_19794432_19794433 chr2R_19794146_19794245;chr2R_19794433_19794458 83.33 NA NA 68.42 NA NA 84.62 92.31 90.91 NA NA 92.31 NA NA NA 70.00 NA NA NA 70.00 NA 50.00 NA 88.89 NA NA 90.91 NA 100.00 NA 95.65 NA 87.50 72.73 NA 100.00 69.23 NA 83.33 100.00 NA 91.67 88.89 NA 77.78 54.55 69.23 NA 70.00 91.67 78.57 NA NA NA 81.82 70.00 77.78 NA K intron_retention CG3793 chr2L + chr2L_15765578_15765674 chr2L_15765577_15765578;chr2L_15765674_15765675 chr2L_15765273_15765577;chr2L_15765675_15766128 0.00 0.00 0.00 4.44 0.00 0.00 2.38 5.00 2.99 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 NA 0.00 0.00 2.50 4.55 0.00 0.00 0.00 0.00 3.51 0.00 3.85 2.00 0.00 4.41 0.00 0.00 2.27 1.49 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 6.56 0.00 0.00 K intron_retention Cip4,I_chr3L_4325411_4326640,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4325384_4326983 chr3L_4325383_4325384;chr3L_4326983_4326984 chr3L_4325311_4325383;chr3L_4326984_4327170 100.00 95.83 100.00 92.73 100.00 94.44 100.00 95.24 100.00 100.00 100.00 97.62 100.00 95.00 100.00 100.00 96.67 96.30 96.15 71.01 95.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 NA 100.00 92.86 91.67 100.00 97.62 100.00 100.00 100.00 95.45 96.77 100.00 100.00 100.00 100.00 94.12 100.00 93.33 100.00 100.00 97.73 100.00 100.00 94.44 100.00 100.00 100.00 100.00 95.00 100.00 K intron_retention RI_chr3R_25759681_25759960,CG15523 chr3R + chr3R_25763534_25763582 chr3R_25763533_25763534;chr3R_25763582_25763583 chr3R_25763237_25763533;chr3R_25763583_25764000 100.00 NA 100.00 100.00 NA NA 93.33 100.00 100.00 NA NA 92.86 100.00 NA 100.00 92.31 NA NA NA 100.00 NA 100.00 100.00 NA NA 88.89 NA NA NA 100.00 90.00 NA 100.00 100.00 NA NA NA NA NA 91.67 NA 100.00 88.89 100.00 NA NA NA 88.89 100.00 NA NA NA NA NA 83.33 NA NA NA K intron_retention Pglym78,Rpn2 chr3R + chr3R_24974275_24974730 chr3R_24974274_24974275;chr3R_24974730_24974731 chr3R_24973946_24974274;chr3R_24974731_24975228 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 2.20 0.00 0.74 0.00 1.51 0.00 0.00 1.35 0.00 0.00 2.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 1.43 1.03 0.00 0.00 0.00 0.00 0.00 0.00 1.80 K alternative_donor TfIIB chr2L + chr2L_10431366_10431476 chr2L_10431420_10431476 chr2L_10431477_10431888;chr2L_10431297_10431365 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 96.67 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389272_2395659 chrX_2389272_2392054;chrX_2392149_2392515;chrX_2392665_2393243;chrX_2393712_2394269;chrX_2394396_2395151;chrX_2395275_2395659 chrX_2392055_2392148;chrX_2392516_2392664;chrX_2393244_2393711;chrX_2394270_2394395;chrX_2395152_2395274 chrX_2389172_2389271;chrX_2395660_2395759 26.66 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG2694,I_chrX_2608271_2608320,I_chrX_2609471_2609546,RI_chrX_2622297_2622430,RI_chrX_2622435_2622577 chrX + chrX_2608271_2608320 chrX_2608270_2608271;chrX_2608320_2608321 chrX_2608171_2608270;chrX_2608321_2608420 100.00 NA NA NA NA NA NA NA 91.67 NA NA 100.00 NA NA NA NA NA NA 100.00 90.91 NA NA 100.00 NA NA 100.00 NA NA NA NA 93.33 NA NA 90.91 NA NA NA 100.00 100.00 92.86 NA 100.00 NA NA NA NA NA 87.50 NA NA 100.00 NA NA NA NA NA NA NA K jcn_only_AA CG4630,RI_chr2R_9103472_9103634,I_chr2R_9103765_9103852,I_chr2R_9103910_9104108,I_chr2R_9103956_9104108,RI_chr2R_9104206_9104265 chr2R - chr2R_9104203_9104265 chr2R_9104206_9104265 chr2R_9104266_9104365;chr2R_9104109_9104202 18.98 NA NA NA NA NA 18.92 10.00 18.75 24.00 NA 16.22 NA NA NA NA NA NA NA 7.84 NA 22.22 25.86 13.11 26.92 NA 19.05 NA 20.69 19.35 43.48 NA 30.00 50.00 30.00 18.92 21.21 NA 10.94 21.74 NA 7.32 NA 16.33 11.11 14.29 12.20 NA NA 21.62 NA 35.00 NA 17.24 NA NA 17.24 NA K intron_retention l(1)G0222,I_chrX_17473084_17473137 chrX - chrX_17470056_17472545 chrX_17470055_17470056;chrX_17472545_17472546 chrX_17469876_17470055;chrX_17472546_17472800 14.86 16.67 15.15 21.95 27.78 16.67 21.15 19.61 22.97 NA 14.71 17.33 25.00 24.32 28.57 15.38 12.00 18.52 27.27 14.63 29.17 15.69 8.33 12.90 10.87 22.58 8.89 0.00 0.00 5.00 25.00 9.09 12.24 22.41 12.82 0.00 4.69 15.91 9.52 14.04 13.64 19.72 22.73 5.88 10.81 15.15 3.23 6.67 17.46 15.15 2.94 13.89 12.00 12.50 21.62 4.00 10.71 15.00 K intron_retention Ubp64E,I_chr3L_5746335_5748653,I_chr3L_5746350_5749304,I_chr3L_5747367_5748653,I_chr3L_5748726_5749304,I_chr3L_5749194_5749304,I_chr3L_5754031_5754092 chr3L + chr3L_5746335_5749304 chr3L_5746334_5746335;chr3L_5749304_5749305 chr3L_5746250_5746334;chr3L_5749305_5749404 0.00 0.00 0.00 0.79 0.00 1.47 2.06 0.91 1.23 3.57 1.41 1.35 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 1.54 0.00 0.88 0.00 0.00 0.00 0.00 0.00 3.30 1.09 0.00 0.84 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 1.26 0.00 1.02 1.27 1.01 1.03 0.48 1.45 2.25 2.04 0.00 1.59 0.00 0.00 0.95 0.00 0.00 K intron_retention CG34424 chr2R + chr2R_19247120_19247192 chr2R_19247119_19247120;chr2R_19247192_19247193 chr2R_19246742_19247119;chr2R_19247193_19247448 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 5.26 10.00 6.06 NA NA 0.00 9.09 NA 5.26 20.00 3.12 NA 0.00 NA 12.50 0.00 NA NA 9.09 0.00 0.00 0.00 NA 3.23 0.00 NA 0.00 0.00 NA 0.00 0.00 NA K jcn_only_AA l(3)05822,I_chr3R_14115739_14115801 chr3R - chr3R_14117222_14123845 chr3R_14117226_14123845 chr3R_14123846_14124586;chr3R_14115802_14117221 100.00 97.40 98.55 100.00 95.65 100.00 98.96 98.78 99.40 100.00 100.00 97.48 100.00 98.25 98.88 100.00 100.00 97.44 98.67 99.32 100.00 98.23 98.02 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 98.00 100.00 100.00 98.15 98.77 100.00 97.10 98.59 100.00 100.00 97.83 100.00 100.00 100.00 100.00 98.59 100.00 100.00 100.00 98.36 100.00 100.00 100.00 K jcn_only_AD d4 chr2R + chr2R_1182569_1182620;chr2R_1182563_1182620;chr2R_1182566_1182620 chr2R_1182573_1182620 chr2R_1182621_1183461;chr2R_1182302_1182562 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Camta,RI_chr2R_5364752_5364878 chr2R + chr2R_5360671_5360742 chr2R_5360671_5360739 chr2R_5359324_5360670;chr2R_5360743_5361705 41.67 48.00 NA 42.42 38.10 NA 40.91 37.04 40.48 NA 52.38 50.00 NA NA NA NA 33.33 NA NA 50.00 NA 23.08 60.00 NA NA NA NA NA NA NA NA NA 31.58 40.00 NA 36.36 46.34 NA NA 50.00 NA 45.16 NA 42.31 NA 47.62 NA 50.00 20.00 NA 35.00 NA NA NA NA NA 41.67 31.82 K cassette Zyx102EF,I_chr4_1079131_1079731,I_chr4_1079131_1080044,I_chr4_1079946_1080044,RI_chr4_1079959_1080044,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1079131_1080044 chr4_1079131_1079726;chr4_1079959_1080044 chr4_1079727_1079958 chr4_1079031_1079130;chr4_1080045_1080072 100.00 96.67 93.75 93.44 100.00 100.00 98.39 96.43 95.38 100.00 94.74 94.74 83.33 100.00 100.00 100.00 96.30 96.15 100.00 96.49 95.00 100.00 95.83 100.00 100.00 100.00 96.55 100.00 93.33 100.00 100.00 93.33 100.00 98.08 100.00 95.45 100.00 100.00 100.00 100.00 100.00 96.36 96.77 100.00 93.75 95.83 100.00 100.00 100.00 100.00 96.67 95.00 100.00 100.00 93.94 95.24 100.00 95.83 K intron_retention CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806425_22807235 chr3R_22806424_22806425;chr3R_22807235_22807236 chr3R_22806325_22806424;chr3R_22807236_22807473 52.08 49.30 49.59 53.25 51.06 47.66 61.38 48.26 39.21 61.11 48.78 69.55 46.09 43.10 61.48 50.20 51.04 40.59 53.57 44.27 54.02 51.92 55.22 47.69 56.00 46.85 65.71 66.67 65.38 47.22 50.47 58.70 62.92 52.53 55.71 36.84 47.62 52.38 50.00 63.44 48.89 49.35 44.64 60.87 58.06 57.75 44.44 59.78 50.76 53.66 52.08 62.50 44.44 54.17 52.38 44.59 52.27 52.70 K intron_retention mura,RI_chr3R_5373093_5377292,I_chr3R_5375533_5376618,RI_chr3R_5380786_5380850 chr3R - chr3R_5367302_5367400 chr3R_5367301_5367302;chr3R_5367400_5367401 chr3R_5366951_5367301;chr3R_5367401_5367704 0.00 NA NA 0.00 NA NA NA 0.00 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA 6.67 NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA Pink1,F_chrX_6578108_6578160,F_chrX_6578108_6578165,I_chrX_6578115_6578251 chrX + chrX_6578495_6578556 chrX_6578495_6578550 chrX_6578252_6578494;chrX_6578557_6578754 80.22 81.08 81.94 81.20 86.05 70.91 87.61 73.68 83.80 82.86 78.57 81.43 79.66 86.08 80.41 81.03 83.33 73.53 77.63 77.78 82.35 79.80 87.76 73.33 84.85 80.00 93.75 NA 78.95 90.41 77.33 76.32 79.72 87.39 80.39 69.23 75.00 62.07 70.59 74.74 79.07 80.58 84.62 85.19 86.36 82.83 71.43 83.64 75.21 79.41 70.73 80.00 72.73 NA 80.22 80.00 84.00 81.25 K jcn_only_AA cta,I_chr2L_22882756_22883485 chr2L + chr2L_22883625_22883688 chr2L_22883625_22883679 chr2L_22883505_22883624;chr2L_22883689_22883736 100.00 NA NA NA NA NA NA NA 96.88 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522912_523380 chrX_522911_522912;chrX_523380_523381 chrX_522849_522911;chrX_523381_523412 73.33 77.78 61.11 80.00 55.56 61.11 84.43 67.57 63.01 70.83 77.78 78.79 66.67 63.16 58.82 57.58 73.33 81.82 72.73 73.75 60.00 85.11 78.26 75.00 87.23 95.45 85.00 93.75 43.59 90.91 69.23 59.46 44.44 54.29 90.91 71.43 81.58 89.47 82.93 75.68 75.68 73.33 69.23 76.92 39.13 67.74 78.26 50.00 70.00 77.27 80.95 70.83 84.00 83.33 61.54 70.00 67.50 45.00 K jcn_only_AD CycT,I_chr3L_17548631_17550687 chr3L - chr3L_17548631_17549473 chr3L_17548631_17549242 chr3L_17548531_17548630;chr3L_17549474_17549519 14.06 18.42 12.35 24.59 6.12 13.79 16.30 11.82 11.90 12.79 18.18 14.94 9.68 20.31 14.93 13.77 17.78 20.83 28.07 14.06 27.27 19.23 8.33 10.23 11.69 32.65 16.83 20.00 21.25 11.34 22.54 5.88 23.08 15.04 9.33 18.95 9.52 6.76 5.73 9.29 13.64 13.29 32.76 9.89 12.12 20.41 13.16 17.65 13.08 15.52 7.07 14.06 18.18 2.22 22.03 9.52 9.76 17.07 K jcn_only_AA chico,I_chr2L_10246534_10246899 chr2L - chr2L_10246040_10246899 chr2L_10246534_10246899 chr2L_10246900_10246999;chr2L_10245878_10246039 4.08 5.71 4.44 2.04 NA 0.00 8.11 4.35 1.52 NA 4.00 3.28 5.56 3.23 2.94 3.28 0.00 11.76 11.63 5.80 NA 10.53 3.12 0.00 7.69 7.14 10.26 16.67 13.64 2.38 4.55 4.00 6.45 4.08 7.41 2.56 3.12 4.44 0.00 5.19 NA 6.00 3.70 3.77 13.04 0.00 3.45 4.88 7.69 7.89 7.27 0.00 0.00 4.76 2.50 0.00 3.70 0.00 K intron_retention I_chr3R_16141663_16144698,CG5077,I_chr3R_16147605_16147670 chr3R + chr3R_16147136_16147197 chr3R_16147135_16147136;chr3R_16147197_16147198 chr3R_16146921_16147135;chr3R_16147198_16147358 56.50 65.00 71.43 39.13 63.64 57.14 58.82 68.42 65.38 41.67 38.10 47.50 62.50 76.47 66.67 70.59 68.18 73.33 53.85 51.43 40.00 53.85 82.61 56.25 NA 54.17 52.17 77.78 20.00 56.25 50.00 NA 40.00 56.76 38.89 50.00 40.00 66.67 66.67 66.67 NA 62.50 52.63 54.05 NA 40.00 58.33 60.00 63.04 54.55 75.00 53.33 66.67 NA 66.67 50.00 45.83 46.15 K intron_retention capu,I_chr2L_3884519_3902594,I_chr2L_3887800_3888648,I_chr2L_3887896_3888648 chr2L - chr2L_3887557_3888648 chr2L_3887556_3887557;chr2L_3888648_3888649 chr2L_3886984_3887556;chr2L_3888649_3888710 22.08 NA NA NA NA NA NA 27.78 17.86 NA NA 23.53 NA NA NA 12.50 NA NA 5.56 31.25 NA 50.00 23.53 NA NA 21.43 NA NA NA NA NA NA 15.38 19.05 NA 69.23 30.77 NA NA 23.53 NA 23.81 NA 12.50 NA 11.11 NA 22.73 21.05 NA NA NA NA NA 6.67 NA NA NA K alternative_acceptor CG6236 chr3R - chr3R_11153785_11153869 chr3R_11153813_11153869 chr3R_11153870_11153988;chr3R_11153649_11153784 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 K jcn_only_AD CG32230,RI_chr3L_23332465_23332529,RI_chr3L_23332577_23334556,RI_chr3L_23332781_23338942 chr3L + chr3L_23332465_23332529 chr3L_23332470_23332529 chr3L_23332530_23332576;chr3L_23332425_23332464 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 97.14 NA 100.00 100.00 96.55 NA 95.00 96.00 100.00 100.00 100.00 100.00 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 98.18 96.15 NA NA NA NA NA 100.00 NA NA NA NA NA 91.67 NA NA NA N intron_retention Spase12 chr3R - chr3R_25316476_25316527 chr3R_25316475_25316476;chr3R_25316527_25316528 chr3R_25316407_25316475;chr3R_25316528_25316678 100.00 100.00 100.00 100.00 55.56 NA 100.00 NA 69.57 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 60.71 100.00 100.00 100.00 70.83 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 57.14 100.00 100.00 100.00 61.11 66.67 100.00 100.00 51.85 100.00 100.00 68.97 100.00 100.00 100.00 100.00 64.00 65.00 NA 100.00 100.00 NA 100.00 73.53 62.50 N alternative_donor Lag1,RI_chrX_6153758_6153930,I_chrX_6153758_6155077,RI_chrX_6153758_6161036,I_chrX_6160907_6161036 chrX - chrX_6153758_6155077;chrX_6153758_6153930;chrX_6153758_6161036;chrX_6153758_6154193;chrX_6153758_6154358;chrX_6153758_6160439 chrX_6153758_6154631 chrX_6153658_6153757;chrX_6161037_6161136 7.92 11.02 7.50 6.96 10.67 7.81 6.36 9.26 7.50 0.64 6.80 7.27 8.68 8.21 5.49 8.03 7.14 5.48 8.44 9.16 0.46 7.01 5.54 7.62 8.85 10.36 2.57 7.92 11.76 6.34 8.76 12.57 4.93 6.90 9.35 6.45 6.17 12.78 9.06 6.42 11.21 7.11 9.74 10.04 10.29 11.19 15.16 9.69 6.05 7.14 5.75 6.47 3.57 11.24 8.80 13.40 10.74 10.40 K alternative_donor CG3621,noncoding_21543,I_chrX_2066779_2066838 chrX + chrX_2066737_2066838;chrX_2066779_2066838 chrX_2066739_2066838 chrX_2066839_2066938;chrX_2066679_2066736 99.09 98.33 100.00 100.00 96.97 98.00 100.00 98.65 98.57 97.62 100.00 98.97 100.00 100.00 96.83 100.00 100.00 100.00 100.00 98.88 100.00 100.00 100.00 98.84 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 98.00 100.00 97.67 98.41 99.02 98.08 98.99 98.89 98.15 99.09 97.30 98.33 100.00 98.95 100.00 100.00 98.72 100.00 98.44 97.50 98.59 100.00 98.21 100.00 100.00 99.00 K intron_retention hfw chrX + chrX_1565763_1565819 chrX_1565762_1565763;chrX_1565819_1565820 chrX_1564849_1565762;chrX_1565820_1566330 1.37 0.00 3.45 2.53 4.55 0.00 0.00 1.10 1.50 2.17 0.00 1.02 0.00 4.08 5.71 0.00 4.35 0.00 0.00 2.13 0.00 2.17 2.70 3.51 1.92 0.00 0.00 1.41 2.94 1.37 3.92 0.00 4.35 2.56 0.00 1.75 1.45 0.00 1.19 0.00 0.00 3.26 4.44 0.88 0.00 0.75 1.75 0.00 3.88 2.78 0.00 0.00 0.00 3.39 0.00 2.82 1.69 0.00 K intron_retention fw chrX - chrX_11888350_11888409 chrX_11888349_11888350;chrX_11888409_11888410 chrX_11887856_11888349;chrX_11888410_11888763 66.67 58.33 NA NA NA NA 52.94 NA 65.00 NA 66.67 56.25 NA NA NA 80.00 72.73 NA 80.00 50.00 NA 6.67 61.54 73.33 NA NA NA NA NA NA 95.83 NA NA 64.29 NA 50.00 62.50 66.67 70.59 69.23 NA 58.33 NA 77.78 NA 76.92 NA 61.54 70.00 43.75 90.91 NA 85.71 NA NA 53.33 93.33 70.83 K cassette pan chr4 + chr4_90021_92946 chr4_90021_90099;chr4_90226_92946 chr4_90100_90225 chr4_90012_90020;chr4_92947_92961 97.06 NA 83.33 93.33 NA NA 100.00 93.33 94.12 NA NA 90.00 83.33 100.00 NA 100.00 100.00 NA 88.89 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA 90.91 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA 83.33 NA NA NA K alternative_last_exon CG10638 chr3L - chr3L_12492589_12494264 chr3L_12494143_12494264 chr3L_12492421_12492588 chr3L_12493975_12494142 chr3L_12494265_12494405 3.17 3.68 3.40 3.37 1.74 2.86 4.61 3.17 2.88 3.16 10.87 1.05 3.10 1.71 4.14 2.04 2.80 3.10 1.21 2.53 5.17 8.12 3.57 5.70 3.37 0.56 4.52 7.31 3.91 6.67 4.81 3.79 2.61 1.83 2.11 5.16 4.28 3.14 2.83 5.22 2.17 1.65 3.81 2.94 5.17 2.94 4.19 6.25 2.88 7.28 5.43 5.00 2.98 2.50 2.16 3.11 1.45 3.64 K intron_retention Utx chr2L - chr2L_10275630_10275696 chr2L_10275629_10275630;chr2L_10275696_10275697 chr2L_10275449_10275629;chr2L_10275697_10275922 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA 0.00 5.71 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 K intron_retention Hsf,I_chr2R_14018415_14018474 chr2R - chr2R_14018412_14018474 chr2R_14018411_14018412;chr2R_14018474_14018475 chr2R_14018315_14018411;chr2R_14018475_14018550 0.00 0.00 0.00 2.99 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG11999,RI_chr3R_1180156_1180307 chr3R - chr3R_1180156_1180307 chr3R_1180156_1180282 chr3R_1180056_1180155;chr3R_1180308_1180407 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.79 100.00 100.00 99.65 99.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.88 99.63 99.11 99.76 100.00 99.34 100.00 100.00 100.00 100.00 99.66 98.94 100.00 100.00 100.00 100.00 100.00 99.46 99.37 100.00 99.78 100.00 99.55 100.00 100.00 99.62 99.53 99.79 100.00 100.00 99.55 99.75 99.51 99.79 99.70 99.72 99.74 99.62 100.00 K jcn_only_AA mu2,I_chr3L_1945373_1945436,I_chr3L_1945382_1945647 chr3L - chr3L_1945592_1945647;chr3L_1945574_1945647 chr3L_1945529_1945647 chr3L_1945648_1945655;chr3L_1945437_1945528 6.67 NA 12.50 2.13 4.17 NA 12.20 3.85 5.97 NA 3.57 6.67 3.12 9.09 14.71 8.47 4.17 21.74 NA 4.00 8.70 NA 2.38 4.55 NA 9.38 11.54 NA NA NA 10.00 NA NA 14.63 NA 0.00 NA NA 10.00 6.25 NA 4.35 12.50 NA NA NA 5.00 5.00 14.81 19.23 5.00 NA NA NA 7.69 NA 0.00 9.52 K intron_retention CG11790,CG11791 chr3R + chr3R_20875669_20876354 chr3R_20875668_20875669;chr3R_20876354_20876355 chr3R_20875600_20875668;chr3R_20876355_20876441 100.00 NA 100.00 100.00 NA 100.00 94.44 92.86 100.00 NA NA 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 93.75 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 80.00 100.00 NA NA 100.00 100.00 93.75 90.91 100.00 NA 100.00 100.00 90.00 100.00 91.67 100.00 NA NA 100.00 100.00 100.00 100.00 90.91 K intron_retention UGP chr3L - chr3L_9347175_9350682 chr3L_9347174_9347175;chr3L_9350682_9350683 chr3L_9347133_9347174;chr3L_9350683_9350991 0.00 0.00 0.00 4.55 0.00 NA 4.76 4.76 8.33 0.00 NA 0.00 NA NA 0.00 5.56 NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 3.92 0.00 0.00 NA NA NA 0.00 7.14 9.09 0.00 0.00 3.70 5.00 NA 2.70 NA 0.00 NA NA NA NA 5.26 0.00 0.00 7.14 NA NA 0.00 0.00 NA NA K intron_retention Tsp3A,CG13762 chrX - chrX_2513073_2513148 chrX_2513072_2513073;chrX_2513148_2513149 chrX_2512902_2513072;chrX_2513149_2513782 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 2.36 1.03 0.00 0.00 0.00 5.88 2.13 10.20 0.00 2.04 0.00 0.00 0.00 1.72 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Aats-ala chr2L - chr2L_8380325_8380447 chr2L_8380324_8380325;chr2L_8380447_8380448 chr2L_8378275_8380324;chr2L_8380448_8381452 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4991083_4991144 chr2L_4991082_4991083;chr2L_4991144_4991145 chr2L_4990908_4991082;chr2L_4991145_4991262 1.22 1.54 0.00 3.05 0.00 0.93 2.22 0.52 1.55 0.00 1.25 0.87 2.70 3.70 2.38 1.48 2.86 0.00 1.83 0.77 0.00 1.75 1.38 1.55 0.49 1.61 3.98 6.90 0.00 1.44 1.22 3.03 2.70 2.42 0.00 0.00 0.37 0.56 0.00 1.82 0.00 2.17 0.00 1.17 0.00 0.00 0.00 0.00 1.57 1.38 0.00 0.73 3.28 0.00 1.32 0.00 1.28 0.00 K intron_retention Ten-m,EI_chr3L_22298865_22299141,I_chr3L_22300015_22300646,I_chr3L_22374182_22399991 chr3L - chr3L_22298865_22299141 chr3L_22298864_22298865;chr3L_22299141_22299142 chr3L_22298765_22298864;chr3L_22299142_22299241 11.76 NA NA NA NA NA NA 15.38 4.35 NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA 11.76 NA NA NA NA NA NA NA NA NA K alternative_donor Nc73EF,I_chr3L_16950628_16951334,I_chr3L_16950952_16952198,I_chr3L_16951588_16952198,I_chr3L_16951626_16952198,I_chr3L_16952138_16952198,I_chr3L_16952985_16955434,I_chr3L_16953768_16954599 chr3L + chr3L_16950628_16952198;chr3L_16950615_16952198 chr3L_16950606_16952198 chr3L_16952199_16952207;chr3L_16950580_16950605 10.55 14.29 26.67 14.29 14.29 37.50 10.00 16.67 0.00 14.29 10.00 11.11 12.50 14.29 10.00 10.00 14.29 0.00 0.00 4.17 12.50 10.00 22.22 0.00 12.50 0.00 12.50 10.00 0.00 NA 12.50 NA NA 18.18 0.00 0.00 5.00 21.43 7.14 9.09 NA 9.52 14.29 0.00 0.00 14.29 12.50 NA 13.64 25.00 5.26 14.29 NA 0.00 12.50 9.09 0.00 NA K intron_retention CG10103,noncoding_10997 chr3L - chr3L_6747594_6748172 chr3L_6747593_6747594;chr3L_6748172_6748173 chr3L_6747493_6747593;chr3L_6748173_6748223 29.41 33.33 18.18 22.22 36.84 22.22 57.14 35.48 27.27 24.14 25.93 29.41 53.33 33.33 20.00 29.41 21.43 36.36 30.30 29.79 50.00 17.07 50.00 36.00 50.00 61.11 44.00 33.33 50.00 19.23 29.63 19.15 9.26 40.00 31.25 28.57 30.00 29.17 18.52 20.83 47.73 37.50 41.18 24.32 19.05 23.08 25.93 17.81 37.50 17.50 37.50 25.00 25.00 21.05 25.93 32.14 28.00 22.09 K intron_retention spi,I_chr2L_19569183_19577185,I_chr2L_19569227_19572142,I_chr2L_19569227_19577173,mir-2a-2,mir-2a-1,mir-2b-2 chr2L - chr2L_19569227_19572499 chr2L_19569226_19569227;chr2L_19572499_19572500 chr2L_19569127_19569226;chr2L_19572500_19572711 66.67 92.31 77.78 61.90 NA 71.43 61.54 78.95 72.00 NA NA 66.67 NA 65.00 69.23 83.33 NA NA 64.00 84.62 NA 54.55 57.58 76.47 46.15 83.33 71.43 NA NA 88.89 70.83 35.71 26.67 61.11 53.33 90.91 60.00 69.23 69.23 35.06 35.71 70.83 NA 45.45 58.33 62.50 64.71 41.18 75.00 61.90 72.22 38.46 NA 66.67 64.71 69.23 NA 80.00 K alternative_donor CG7656,I_chr3L_15580697_15581083 chr3L - chr3L_15580697_15581265;chr3L_15580697_15581154 chr3L_15580697_15581083 chr3L_15580597_15580696;chr3L_15581266_15581315 0.00 0.00 0.00 3.57 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD chic,RI_chr2L_5976783_5980950,I_chr2L_5979705_5979818,I_chr2L_5979705_5979941,RI_chr2L_5979705_5979951,I_chr2L_5979705_5979953,I_chr2L_5979705_5980025,I_chr2L_5979705_5980213,I_chr2L_5979705_5980370,I_chr2L_5979705_5980558,I_chr2L_5979705_5980632,I_chr2L_5979705_5980639,RI_chr2L_5979705_5980734 chr2L - chr2L_5979705_5980952;chr2L_5979705_5980846 chr2L_5979705_5980950 chr2L_5979605_5979704;chr2L_5980953_5981025 80.41 76.92 81.28 82.79 80.68 80.48 78.35 82.76 78.96 80.41 78.61 77.84 82.86 76.11 79.12 77.44 87.24 73.19 83.33 81.08 79.25 80.20 75.00 76.72 75.00 85.34 68.25 80.56 78.09 82.78 85.34 84.33 86.47 81.80 81.68 73.85 78.95 74.78 82.01 86.15 82.70 85.82 79.48 87.50 80.19 82.83 73.19 83.36 78.57 72.90 71.13 81.36 80.62 63.73 87.40 74.60 73.11 82.28 K alternative_acceptor Ide,I_chr3L_20366301_20366354,I_chr3L_20368434_20368519,I_chr3L_20368443_20368519 chr3L - chr3L_20368443_20368519;chr3L_20368462_20368519 chr3L_20368434_20368519 chr3L_20368520_20368619;chr3L_20368343_20368433 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 5.26 5.41 0.00 14.29 0.00 0.00 0.00 0.00 5.00 2.38 5.88 0.00 5.13 0.00 0.00 0.00 0.00 6.25 4.17 0.00 5.71 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 2.70 7.69 2.44 0.00 6.25 0.00 0.00 6.25 0.00 2.63 11.11 5.00 5.56 0.00 8.33 0.00 5.88 0.00 0.00 K intron_retention CG32000,RI_chr4_153025_153811,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_153862_154213 chr4_153861_153862;chr4_154213_154214 chr4_153812_153861;chr4_154214_154339 15.00 NA NA NA NA NA 30.77 NA 12.50 NA NA 14.29 NA NA NA 15.79 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654157,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15652363_15654499;chrX_15652363_15654157 chrX_15652363_15654272 chrX_15652357_15652362;chrX_15654500_15654599 25.00 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Mnn1 chr2L + chr2L_7056537_7057347 chr2L_7056536_7056537;chr2L_7057347_7057348 chr2L_7056520_7056536;chr2L_7057348_7057674 100.00 NA NA 100.00 NA NA 100.00 100.00 94.74 NA NA 100.00 100.00 NA NA 100.00 NA NA NA 90.91 NA NA 100.00 100.00 NA NA 100.00 NA 100.00 NA NA NA NA 100.00 NA 100.00 100.00 NA NA 100.00 NA 90.91 NA NA NA NA NA NA 93.33 NA 100.00 NA NA NA NA NA NA NA K alternative_acceptor Tif-IA chr2L + chr2L_22257903_22257999 chr2L_22257903_22257959 chr2L_22257653_22257902;chr2L_22258000_22258221 96.15 93.48 96.55 99.21 94.87 97.37 97.54 96.46 96.88 100.00 90.24 94.34 100.00 95.45 90.57 98.28 91.07 91.67 91.18 95.45 97.56 100.00 95.08 97.83 96.43 97.37 95.00 97.06 88.89 89.66 90.20 96.43 95.83 92.00 92.11 93.33 96.77 100.00 92.00 98.11 96.15 96.23 92.59 94.64 97.14 94.23 97.67 96.15 96.69 95.45 98.33 100.00 93.94 94.44 88.89 91.67 96.15 97.67 K jcn_only_AD CG15625 chr2L + chr2L_4890368_4890428 chr2L_4890372_4890428 chr2L_4890429_4891378;chr2L_4889995_4890367 2.00 4.00 NA 8.00 NA 0.00 0.00 4.35 2.70 NA NA 3.45 NA NA NA 4.76 NA 0.00 NA 2.04 NA 7.41 1.82 2.27 0.00 NA 8.16 6.45 7.41 0.00 10.00 3.33 0.00 0.00 5.00 0.00 1.96 0.00 2.60 2.33 8.70 0.00 NA 0.00 0.00 4.88 3.92 6.45 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.70 0.00 K alternative_donor CG1622,I_chrX_13192409_13192738,EI_chrX_13192857_13192928 chrX + chrX_13192846_13192928 chrX_13192857_13192928 chrX_13192929_13192997;chrX_13192807_13192845 4.23 2.06 5.04 4.71 5.06 1.79 10.00 3.50 3.12 2.50 5.26 2.98 4.69 6.06 11.00 2.86 4.41 7.37 5.56 5.77 1.92 7.27 2.54 3.30 2.78 5.10 8.70 11.39 6.54 4.62 12.44 3.62 4.23 4.91 4.17 2.63 4.96 3.85 3.43 5.18 4.27 4.46 2.94 2.20 3.74 3.15 0.00 4.88 4.46 5.15 2.97 3.39 2.88 5.10 3.10 4.13 3.48 3.94 K alternative_acceptor Amph,I_chr2R_8495684_8495920,I_chr2R_8495684_8495960,I_chr2R_8498227_8498492 chr2R + chr2R_8495684_8496733 chr2R_8495684_8496673 chr2R_8495584_8495683;chr2R_8496734_8497141 100.00 100.00 100.00 93.75 100.00 100.00 94.44 100.00 100.00 100.00 100.00 95.45 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 96.97 K alternative_donor CG5316 chr3R + chr3R_15229841_15230022 chr3R_15229968_15230022 chr3R_15230023_15230471;chr3R_15229615_15229840 0.00 0.00 4.76 2.56 NA 0.00 6.82 2.27 0.00 NA 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 1.96 K intron_retention crb chr3R + chr3R_20132606_20133075 chr3R_20132605_20132606;chr3R_20133075_20133076 chr3R_20132583_20132605;chr3R_20133076_20133396 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K alternative_donor CG1640,RI_chrX_13265127_13267895,I_chrX_13265553_13267895,I_chrX_13265618_13267895,RI_chrX_13266680_13267895,RI_chrX_13267529_13267895,I_chrX_13271541_13271890 chrX + chrX_13265560_13267895;chrX_13265401_13267895;chrX_13265248_13267895;chrX_13265295_13267895 chrX_13265094_13267895 chrX_13267896_13267973;chrX_13265065_13265093 64.52 63.64 62.96 57.14 55.56 70.00 47.83 52.94 54.55 78.57 55.00 50.00 75.00 36.36 56.00 65.52 46.67 66.67 57.14 62.00 63.64 68.97 53.85 58.33 60.00 64.71 68.97 64.71 66.67 70.97 58.33 83.33 82.98 63.64 68.18 47.37 59.46 71.43 73.53 70.37 77.78 57.14 70.59 59.09 88.00 68.75 57.89 72.97 56.10 66.67 64.52 66.67 66.67 54.55 42.11 68.75 66.67 83.61 K intron_retention CG10407,ird5,CG10185 chr3R - chr3R_11871397_11871528 chr3R_11871396_11871397;chr3R_11871528_11871529 chr3R_11871077_11871396;chr3R_11871529_11871809 0.00 NA NA NA NA NA NA NA 4.76 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.14 NA 0.00 NA NA NA NA 0.00 NA 10.53 NA 0.00 NA NA NA NA NA NA 14.29 K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27761114_27762991,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27707594_27801169 chr3R_27707594_27747354;chr3R_27747397_27757793;chr3R_27758337_27784756;chr3R_27784850_27795477;chr3R_27795508_27798223;chr3R_27798276_27801169 chr3R_27747355_27747396;chr3R_27757794_27758336;chr3R_27784757_27784849;chr3R_27795478_27795507;chr3R_27798224_27798275 chr3R_27707494_27707593;chr3R_27801170_27801219 83.34 NA NA NA NA NA NA NA 100.00 NA NA 66.67 NA 100.00 100.00 NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA 100.00 NA 66.67 NA 66.67 NA NA NA NA 33.33 NA NA NA NA NA NA NA NA 66.67 K cassette zip,I_chr2R_20878796_20879147 chr2R - chr2R_20884825_20885800 chr2R_20884825_20885100;chr2R_20885221_20885800 chr2R_20885101_20885220 chr2R_20884732_20884824;chr2R_20885801_20885810 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 1.89 0.79 0.00 1.59 0.00 1.47 1.59 1.72 2.08 2.78 2.17 0.00 0.84 0.95 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 1.54 1.01 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.85 0.00 0.73 0.00 2.22 2.50 0.00 0.00 0.00 0.00 K jcn_only_AA MB8.chr3R.pasa.66,ref1,RI_chr3R_2904130_2904237,RI_chr3R_2904305_2904543,I_chr3R_2904452_2904543 chr3R - chr3R_2904130_2904543;chr3R_2904452_2904543 chr3R_2904305_2904543 chr3R_2904544_2904643;chr3R_2904030_2904129 2.23 2.80 0.00 5.76 4.03 1.32 1.15 2.79 1.45 2.42 3.60 3.85 6.60 0.00 2.75 2.08 1.45 1.36 5.98 1.40 3.07 2.30 1.93 1.34 2.44 5.66 6.29 4.45 2.17 2.50 2.86 3.55 1.41 1.49 2.07 1.55 2.12 2.23 1.91 2.86 6.15 1.80 5.36 2.58 1.12 2.63 2.23 4.08 1.11 3.36 1.72 2.96 1.31 0.93 0.00 0.90 0.80 0.52 K intron_retention aPKC,I_chr2R_10833552_10833654,RI_chr2R_10849347_10850391 chr2R - chr2R_10833596_10833654 chr2R_10833595_10833596;chr2R_10833654_10833655 chr2R_10833560_10833595;chr2R_10833655_10833754 28.57 32.00 33.33 7.50 56.25 35.29 28.57 33.33 38.89 33.33 20.00 35.90 25.00 29.17 38.10 51.16 47.06 26.32 50.00 26.79 28.57 9.43 37.50 21.05 26.67 58.82 24.24 28.57 19.23 14.29 50.00 50.00 27.59 38.71 14.29 29.55 25.00 16.28 16.67 23.08 33.33 36.17 46.15 11.76 35.71 17.95 7.32 26.92 33.33 24.39 14.29 19.44 15.38 15.62 33.33 12.50 24.32 32.00 K intron_retention Rho1,RI_chr2R_11991687_11992537 chr2R + chr2R_11993303_11993364 chr2R_11993302_11993303;chr2R_11993364_11993365 chr2R_11993222_11993302;chr2R_11993365_11993980 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.16 0.00 0.37 0.44 0.13 0.26 0.36 0.40 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.22 0.00 0.00 0.55 0.73 0.00 0.00 0.28 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.33 0.15 0.00 0.25 0.00 0.14 0.50 0.34 0.00 0.00 0.08 0.14 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 K intron_retention galectin,I_chr2L_72082_75077,RI_chr2L_72978_75077,RI_chr2L_73693_75077,RI_chr2L_74573_75077 chr2L + chr2L_75019_75077 chr2L_75018_75019;chr2L_75077_75078 chr2L_74903_75018;chr2L_75078_75177 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention Pk61C,I_chr3L_143454_143514 chr3L + chr3L_143218_143514 chr3L_143217_143218;chr3L_143514_143515 chr3L_142943_143217;chr3L_143515_143614 0.00 2.44 0.00 2.47 4.26 0.00 3.70 3.41 0.00 NA 0.00 2.35 3.57 2.00 0.00 2.15 0.00 0.00 5.77 2.15 0.00 6.52 6.82 6.25 0.00 0.00 8.89 13.04 18.52 5.00 0.00 NA 0.00 2.27 0.00 0.00 5.41 8.70 0.00 1.96 0.00 2.27 0.00 0.00 0.00 0.00 0.00 3.45 2.41 0.00 4.84 2.70 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention drpr,I_chr3L_1720385_1723579 chr3L - chr3L_1716708_1716796 chr3L_1716707_1716708;chr3L_1716796_1716797 chr3L_1716675_1716707;chr3L_1716797_1716943 92.31 NA 91.67 77.42 NA 90.00 92.31 86.96 94.74 NA 71.43 100.00 95.65 100.00 91.67 100.00 100.00 100.00 100.00 94.12 77.78 75.00 100.00 100.00 NA NA NA NA NA NA 91.67 NA 90.91 100.00 NA NA 88.89 NA 88.89 92.31 90.00 95.83 NA NA NA NA NA 100.00 100.00 90.91 100.00 NA NA 88.89 90.00 NA NA 90.91 K mutually_exclusive Vha100-1,I_chr3R_24958227_24960770,RI_chr3R_24959152_24959582,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24958227_24959582,chr3R_24959684_24960770 chr3R_24958227_24959059,chr3R_24959152_24960770 chr3R_24959583_24959683 chr3R_24959060_24959151 chr3R_24958127_24958226;chr3R_24960771_24960870 44.71 35.56 42.86 66.67 30.00 34.62 48.48 41.94 34.33 51.85 36.84 56.00 71.43 41.18 40.00 46.15 34.78 28.57 69.23 22.78 29.17 37.50 44.71 46.05 56.76 52.17 48.89 62.96 62.50 48.89 33.33 52.38 48.33 32.65 47.37 50.00 40.28 38.78 45.59 34.62 64.10 39.19 35.00 55.26 45.65 42.11 39.02 62.16 35.85 50.00 45.90 44.83 46.67 36.84 38.71 32.35 39.02 64.44 K alternative_donor I_chr2L_11009331_11009442,dUTPase,I_chr2L_11011380_11011453 chr2L + chr2L_11011394_11011471;chr2L_11011380_11011471 chr2L_11011419_11011471 chr2L_11011472_11011553;chr2L_11011335_11011379 23.48 18.63 21.90 45.00 23.97 26.21 27.74 26.87 25.43 17.58 21.10 23.48 27.27 27.05 24.39 31.40 28.30 18.46 27.75 26.06 25.58 10.67 12.12 10.91 16.33 45.24 34.33 25.00 31.37 14.29 30.09 25.37 21.43 29.44 20.41 11.36 9.15 9.82 10.71 18.56 42.86 31.25 24.80 14.89 20.62 21.43 10.87 41.03 29.51 13.17 19.75 15.66 10.53 9.46 29.22 12.73 11.96 26.09 K intron_retention RI_chrX_1796525_1796585,mip130,CG3573,I_chrX_1820956_1821011,CG11596 chrX + chrX_1817111_1817179 chrX_1817110_1817111;chrX_1817179_1817180 chrX_1817028_1817110;chrX_1817180_1817898 100.00 98.33 97.50 100.00 97.44 96.77 96.97 100.00 97.65 97.96 97.22 98.51 100.00 96.30 97.73 100.00 97.06 97.62 100.00 98.88 100.00 98.70 98.95 100.00 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 98.15 98.04 99.18 100.00 98.80 99.06 100.00 100.00 100.00 100.00 97.62 100.00 97.83 100.00 100.00 100.00 100.00 97.78 97.50 100.00 100.00 100.00 100.00 100.00 K intron_retention I_chr2L_19372717_19381864,noncoding_3775 chr2L + chr2L_19384476_19384499 chr2L_19384475_19384476;chr2L_19384499_19384500 chr2L_19384168_19384475;chr2L_19384500_19384908 0.00 4.44 0.00 0.00 NA 0.00 0.00 0.00 2.13 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention CG10217 chr3R - chr3R_19588690_19588778 chr3R_19588689_19588690;chr3R_19588778_19588779 chr3R_19588271_19588689;chr3R_19588779_19588856 0.00 0.00 0.00 3.57 NA NA 4.00 4.35 6.52 NA NA 3.57 NA NA 5.00 0.00 NA 0.00 0.00 6.25 0.00 25.71 8.51 0.00 0.00 NA 3.92 0.00 5.00 10.53 5.00 0.00 14.29 0.00 0.00 0.00 2.00 0.00 0.00 0.00 NA 3.23 0.00 0.00 NA 0.00 0.00 NA 0.00 2.78 0.00 0.00 NA 0.00 4.55 10.34 0.00 NA K intron_retention I_chr2R_8821104_8821171,CG13322,I_chr2R_8823775_8823829 chr2R - chr2R_8823766_8823829 chr2R_8823765_8823766;chr2R_8823829_8823830 chr2R_8823675_8823765;chr2R_8823830_8823929 93.94 95.83 100.00 97.37 88.89 100.00 89.47 92.86 91.38 100.00 85.71 92.50 88.46 94.74 93.94 81.40 100.00 84.00 92.00 91.07 95.45 89.29 97.50 86.67 100.00 96.67 96.00 77.78 95.24 92.31 96.30 93.75 97.22 91.18 88.46 96.15 88.46 100.00 97.06 88.89 100.00 97.78 80.00 94.44 94.12 92.31 85.71 95.83 90.24 100.00 95.35 95.00 92.31 95.45 92.31 88.24 90.00 94.12 K alternative_donor I_chr2L_12099367_12099435,Aats-thr chr2L + chr2L_12103835_12104491 chr2L_12104057_12104491 chr2L_12104492_12104552;chr2L_12103774_12103834 13.03 11.11 17.21 15.89 4.86 8.77 17.63 9.64 9.12 10.71 19.81 10.93 11.34 12.15 13.88 17.44 14.62 12.06 12.32 10.44 17.57 5.29 16.38 19.27 29.35 20.48 25.71 11.41 17.24 11.41 17.28 9.18 11.45 12.92 16.30 26.67 10.95 13.45 11.56 13.03 21.57 13.51 12.80 14.37 12.50 12.66 14.62 8.65 12.95 12.28 17.02 17.24 13.10 15.62 11.93 20.56 15.08 10.04 K alternative_donor cnn,I_chr2R_9333096_9336723,I_chr2R_9333096_9336812,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9334834_9336723;chr2R_9334834_9336812;chr2R_9334834_9336501 chr2R_9334834_9336719 chr2R_9334744_9334833;chr2R_9336813_9336819 10.00 15.38 6.67 14.29 0.00 9.09 7.32 9.68 8.33 10.53 13.33 15.79 4.76 0.00 7.69 6.06 8.33 0.00 5.56 15.56 16.67 10.81 5.88 11.11 15.79 20.00 11.76 11.43 15.38 12.12 4.35 9.09 10.53 18.75 7.69 18.52 3.70 18.18 7.69 15.22 4.76 16.00 7.69 6.82 9.09 15.38 25.00 4.44 9.38 5.56 0.00 5.88 12.50 11.11 15.79 16.67 10.00 15.79 K intron_retention CG13551,I_chr2R_19265701_19270570 chr2R - chr2R_19270283_19270611 chr2R_19270282_19270283;chr2R_19270611_19270612 chr2R_19270138_19270282;chr2R_19270612_19270645 100.00 100.00 92.31 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 K cassette CG32016,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_974853_975546 chr4_974853_975114;chr4_975490_975546 chr4_975115_975489 chr4_974753_974852;chr4_975547_975646 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.92 100.00 97.92 100.00 100.00 100.00 100.00 98.77 98.90 100.00 100.00 100.00 97.62 100.00 93.33 98.04 100.00 90.62 100.00 100.00 100.00 100.00 99.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.57 100.00 100.00 100.00 K intron_retention unc-5,E_chr2R_11238100_11240757,I_chr2R_11252444_11252570 chr2R + chr2R_11249806_11252017 chr2R_11249805_11249806;chr2R_11252017_11252018 chr2R_11249654_11249805;chr2R_11252018_11252023 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.91 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 K jcn_only_AD vari,I_chr2L_20792267_20794059 chr2L - chr2L_20790721_20791229 chr2L_20790721_20791166 chr2L_20790622_20790720;chr2L_20791230_20791664 100.00 100.00 100.00 98.60 100.00 100.00 98.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.14 100.00 99.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.22 100.00 99.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.63 98.97 98.85 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG3793 chr2L + chr2L_15765578_15765674 chr2L_15765590_15765674 chr2L_15765675_15766128;chr2L_15765273_15765577 6.40 11.94 5.77 1.64 2.33 22.73 8.06 5.45 5.26 6.25 3.03 6.67 9.76 7.69 19.05 5.48 5.45 12.96 5.17 2.94 10.26 15.00 5.77 5.56 6.82 6.52 10.00 NA 11.76 13.11 1.82 6.45 17.78 6.25 2.04 6.67 2.56 6.35 5.48 5.63 8.06 6.25 11.90 5.88 11.76 8.08 9.52 7.89 6.32 8.85 8.00 5.26 6.00 9.21 7.41 3.70 3.30 0.00 K alternative_donor CG2219,I_chr4_199813_199889,RI_chr4_202143_202194 chr4 - chr4_199838_199889 chr4_199838_199886 chr4_199758_199837;chr4_199890_199942 3.92 1.89 2.50 6.94 3.45 5.26 3.54 8.33 2.50 5.56 3.33 2.90 3.92 2.22 8.82 5.56 6.12 0.00 4.65 5.26 8.33 4.76 4.05 3.23 2.70 0.00 3.28 5.00 3.33 4.26 2.33 9.52 0.00 6.06 0.00 2.86 7.50 5.41 2.56 5.00 6.45 1.56 4.44 5.00 4.76 6.90 2.13 4.65 2.25 5.41 1.89 4.88 3.03 0.00 7.69 2.27 1.47 3.57 K intron_retention CG7427,I_chr3L_15557029_15557361,RI_chr3L_15557186_15557361 chr3L + chr3L_15556830_15557361 chr3L_15556829_15556830;chr3L_15557361_15557362 chr3L_15556708_15556829;chr3L_15557362_15557461 0.00 0.00 0.00 2.70 0.00 0.00 0.00 2.02 0.00 0.00 1.75 1.77 3.17 0.00 0.00 0.94 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.88 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10915,I_chr2R_14049834_14049972,I_chr2R_14050013_14050356,F_chr2R_14055227_14055470 chr2R + chr2R_14049834_14050356 chr2R_14049833_14049834;chr2R_14050356_14050357 chr2R_14049734_14049833;chr2R_14050357_14050456 3.39 2.56 0.00 0.00 0.00 0.00 0.00 11.54 2.00 5.71 0.00 9.38 17.65 12.50 6.25 0.00 4.76 0.00 0.00 1.67 6.67 23.29 5.36 3.77 0.00 0.00 6.12 8.00 0.00 0.00 0.00 7.14 5.26 0.00 0.00 0.00 5.48 3.39 7.81 4.00 0.00 5.63 6.67 10.00 0.00 2.70 4.65 10.81 8.51 6.00 7.55 0.00 7.41 0.00 3.70 2.94 0.00 0.00 K intron_retention Mdh chr3R + chr3R_22981441_22981499 chr3R_22981440_22981441;chr3R_22981499_22981500 chr3R_22981288_22981440;chr3R_22981500_22981794 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG40228,noncoding_14406,RI_chr3LHet_2190419_2190470 chr3LHet - chr3LHet_2190419_2190563;chr3LHet_2190419_2190548;chr3LHet_2190419_2190470;chr3LHet_2190419_2190561 chr3LHet_2190419_2190556 chr3LHet_2190319_2190418;chr3LHet_2190564_2190570 2.40 2.06 2.02 3.29 2.94 2.33 1.12 1.24 2.46 NA 0.00 1.60 1.85 2.63 2.50 2.16 2.33 3.45 5.56 1.12 1.85 4.76 4.84 0.00 0.00 0.00 1.12 2.94 0.00 5.13 4.05 2.90 4.55 2.40 2.26 3.45 NA 4.44 0.00 0.00 2.70 2.67 2.61 4.69 1.89 4.18 3.08 2.42 2.37 3.41 0.86 2.00 1.30 0.00 3.60 1.74 3.25 2.50 K alternative_acceptor I_chr2L_8029734_8029787,Cka,CG7429 chr2L + chr2L_8036299_8036381 chr2L_8036299_8036357 chr2L_8035821_8036298;chr2L_8036382_8036576 25.58 32.52 20.92 28.04 24.06 25.58 14.12 27.04 24.23 21.60 21.01 22.73 25.66 25.71 29.03 25.56 27.12 25.86 27.27 21.54 21.17 27.71 18.39 30.71 26.14 24.80 42.15 41.75 19.46 19.66 22.60 21.43 19.75 26.34 22.46 8.14 27.36 26.15 29.17 24.26 17.14 23.88 20.87 23.48 27.54 23.29 30.07 22.73 26.51 29.67 31.25 29.73 26.47 20.95 26.92 27.37 30.00 23.81 K intron_retention CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3082228_3083732 chr3L_3082227_3082228;chr3L_3083732_3083733 chr3L_3082161_3082227;chr3L_3083733_3083809 5.72 0.00 5.56 8.51 NA NA 0.00 6.90 8.33 NA NA 7.41 13.33 NA 16.67 3.85 0.00 0.00 8.00 9.76 7.14 NA 0.00 0.00 NA 8.00 0.00 NA NA NA 4.76 NA NA 5.88 NA NA 0.00 NA NA 10.53 NA 10.81 0.00 NA NA NA NA NA 9.09 NA 0.00 NA NA NA 0.00 NA NA NA K alternative_donor l(3)82Fd,I_chr3R_1125296_1161435,I_chr3R_1125296_1175189,I_chr3R_1129905_1160126,I_chr3R_1140028_1160126,I_chr3R_1147660_1148709 chr3R - chr3R_1148848_1149160;chr3R_1148848_1149386;chr3R_1148848_1149460 chr3R_1148848_1149413 chr3R_1148710_1148847;chr3R_1149461_1149489 25.00 NA NA 0.00 NA NA 40.00 40.00 25.00 NA NA 0.00 NA NA NA 28.57 NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor Aldh-III,RE_chr2R_3355332_3355720,I_chr2R_3356541_3356614,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3354556_3354987 chr2R_3354822_3354987 chr2R_3354988_3355138;chr2R_3354549_3354555 85.42 86.59 78.79 87.50 80.77 86.27 91.80 74.31 78.01 95.45 79.31 82.86 66.67 85.48 80.30 92.93 80.33 87.50 79.45 84.83 76.09 94.74 87.50 83.54 86.11 77.50 85.00 93.75 93.33 82.50 89.39 91.67 81.25 83.67 81.25 94.29 85.26 84.13 83.67 86.52 92.50 79.23 85.42 86.44 88.33 92.78 92.31 92.31 79.63 87.67 79.27 91.11 79.59 90.67 79.10 85.71 87.78 82.35 K intron_retention yki chr2R - chr2R_19953837_19954083 chr2R_19953836_19953837;chr2R_19954083_19954084 chr2R_19953784_19953836;chr2R_19954084_19954239 2.78 6.56 2.78 4.17 0.00 2.13 7.87 3.51 1.72 4.76 9.09 5.61 1.23 0.00 2.41 2.73 3.77 5.41 1.43 2.67 0.00 9.26 1.47 2.78 5.77 3.77 8.57 9.26 3.80 4.92 2.60 1.74 4.81 1.96 0.00 11.36 5.71 4.88 3.61 3.05 3.03 5.88 0.00 2.56 2.56 2.44 5.66 5.00 2.52 0.85 5.21 4.26 0.99 1.14 2.53 0.00 0.00 2.75 K alternative_donor CG2258,I_chrX_7993647_7995101,I_chrX_7993647_7995119,I_chrX_7993650_7995126,I_chrX_7994188_7995101 chrX - chrX_7993650_7995978;chrX_7993650_7995101 chrX_7993650_7995119 chrX_7993643_7993649;chrX_7995979_7996028 23.08 20.00 20.00 33.33 40.00 25.00 40.00 18.18 11.11 NA 33.33 23.08 20.00 40.00 33.33 11.11 40.00 40.00 42.86 20.00 40.00 33.33 21.43 33.33 16.67 20.00 28.57 33.33 33.33 20.00 37.50 NA NA 18.18 16.67 25.00 20.00 16.67 22.22 20.00 40.00 11.11 40.00 0.00 NA 50.00 20.00 37.50 20.00 14.29 22.22 66.67 16.67 50.00 11.11 25.00 20.00 28.57 K alternative_acceptor CG7987,RI_chr3R_10400799_10401492 chr3R - chr3R_10400608_10401492;chr3R_10400782_10401492 chr3R_10400799_10401492 chr3R_10401493_10401559;chr3R_10400270_10400607 7.14 10.00 2.63 9.80 15.38 5.00 0.00 7.69 12.86 18.75 9.09 8.97 6.90 9.76 11.36 7.58 7.14 16.13 10.26 2.44 4.00 2.22 10.45 12.00 11.76 15.15 13.04 2.44 6.67 0.00 4.11 7.69 7.41 5.00 0.00 7.69 12.24 5.71 2.90 7.79 9.09 4.76 12.12 3.57 7.69 5.56 5.71 4.44 8.05 6.90 3.03 6.25 4.55 0.00 6.00 12.12 6.45 6.67 K intron_retention Aats-ala-m chr3L + chr3L_5139463_5139524 chr3L_5139462_5139463;chr3L_5139524_5139525 chr3L_5139239_5139462;chr3L_5139525_5139698 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 5.26 0.00 NA NA 0.00 0.00 11.11 0.00 0.00 4.17 NA 8.70 0.00 NA 0.00 NA NA 0.00 0.00 6.67 0.00 2.94 0.00 3.23 5.13 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 NA N alternative_donor Syx4,I_chrX_2635555_2635621,I_chrX_2636831_2636971 chrX - chrX_2636025_2636593 chrX_2636025_2636091 chrX_2635931_2636024;chrX_2636594_2636830 0.00 1.27 1.22 0.00 0.00 1.59 1.32 2.70 1.56 0.00 0.00 2.50 3.85 0.00 3.57 1.39 0.00 1.72 3.70 0.69 0.00 0.00 1.11 0.00 0.00 2.33 0.00 2.70 0.00 0.00 2.35 0.00 0.00 2.88 0.00 2.94 0.00 0.00 0.00 0.88 0.00 1.72 2.38 0.00 0.00 0.00 0.00 1.09 2.17 1.19 0.97 0.00 0.00 0.00 1.27 0.00 1.89 0.00 K alternative_donor CG12753,I_chr3R_12265080_12265169,Pak3 chr3R - chr3R_12265080_12265334 chr3R_12265080_12265169 chr3R_12264980_12265079;chr3R_12265335_12266125 0.00 2.63 0.00 2.27 0.00 0.00 2.13 2.63 2.90 0.00 0.00 2.44 0.00 0.00 0.00 0.00 4.55 0.00 3.12 1.67 0.00 3.03 4.29 2.38 3.23 0.00 2.08 7.69 0.00 2.70 0.00 0.00 9.52 5.00 7.41 3.85 2.94 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 3.85 6.67 0.00 3.70 4.55 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 K intron_retention vsg,I_chr3L_9707724_9708265 chr3L + chr3L_9707500_9707605 chr3L_9707499_9707500;chr3L_9707605_9707606 chr3L_9707380_9707499;chr3L_9707606_9707723 7.92 4.98 6.74 3.99 4.80 5.69 9.33 4.81 4.39 11.21 6.51 7.07 5.17 6.91 7.98 6.56 3.80 7.39 6.78 11.97 7.23 17.70 9.49 8.42 8.57 7.21 21.03 25.42 52.24 9.00 8.11 19.70 6.08 4.95 8.18 28.57 5.38 8.20 10.06 8.97 16.81 5.35 5.67 9.15 8.79 17.56 11.63 23.21 6.05 6.59 11.32 4.26 6.43 14.86 5.72 7.92 7.89 18.66 K intron_retention CG15011 chr3L - chr3L_4256500_4256559 chr3L_4256499_4256500;chr3L_4256559_4256560 chr3L_4256422_4256499;chr3L_4256560_4256655 3.84 NA 5.88 4.88 0.00 13.33 0.00 0.00 5.08 0.00 0.00 3.23 0.00 0.00 0.00 29.41 6.67 6.67 0.00 6.98 5.88 0.00 7.41 8.00 NA 6.25 21.05 19.05 14.29 3.33 6.67 NA 0.00 6.90 NA NA 4.35 0.00 0.00 0.00 NA 0.00 NA 0.00 3.33 8.33 13.33 0.00 6.25 0.00 NA NA NA NA 0.00 0.00 4.35 4.88 K intron_retention CG31431 chr3R + chr3R_17697398_17697703 chr3R_17697397_17697398;chr3R_17697703_17697704 chr3R_17697369_17697397;chr3R_17697704_17697862 94.12 100.00 87.50 100.00 NA NA 100.00 100.00 93.75 NA NA 93.33 NA NA 100.00 92.86 NA NA 100.00 94.74 NA NA 88.89 NA NA 100.00 90.00 NA NA NA 88.89 NA NA 100.00 NA NA NA NA NA NA NA 95.24 NA 92.31 NA NA NA NA 94.12 NA 81.82 NA NA NA 88.89 NA NA NA K intron_retention CG1969 chr3R + chr3R_25567092_25567489 chr3R_25567091_25567092;chr3R_25567489_25567490 chr3R_25566873_25567091;chr3R_25567490_25567631 94.44 96.55 92.00 93.75 100.00 95.24 96.88 93.75 97.78 94.44 93.75 93.33 93.33 95.45 95.24 93.55 94.44 93.75 86.96 97.22 100.00 59.09 94.59 94.59 91.67 90.91 96.67 100.00 100.00 84.21 95.24 93.75 96.67 97.37 96.00 69.57 96.43 85.19 93.55 97.30 86.96 97.37 96.15 82.61 95.00 90.00 88.57 94.44 95.00 93.94 97.06 94.44 89.13 97.14 100.00 96.67 92.73 92.31 K cassette ens,I_chr3L_4130719_4131120 chr3L - chr3L_4128974_4131120;chr3L_4127163_4131120 chr3L_4127163_4129650,chr3L_4128974_4129650;chr3L_4129789_4131120 chr3L_4129651_4129788 chr3L_4126989_4127162;chr3L_4131121_4131220 77.24 81.25 82.09 61.90 85.25 90.16 79.07 79.79 79.75 66.67 86.36 85.52 65.62 77.05 77.33 61.97 84.13 71.79 80.33 96.92 78.46 75.00 82.14 76.19 76.47 65.38 73.33 69.14 60.68 65.77 74.16 71.43 65.65 79.25 69.05 72.28 83.01 81.73 72.73 71.59 67.86 74.55 72.13 77.48 69.66 74.03 82.14 77.24 79.03 66.67 79.34 82.67 86.27 70.83 82.89 78.87 82.50 77.42 K jcn_only_AD CG5482,I_chr2R_14519136_14519239 chr2R - chr2R_14519136_14519367;chr2R_14519136_14519239 chr2R_14519136_14519254 chr2R_14519036_14519135;chr2R_14519368_14519403 100.00 97.30 97.87 100.00 96.30 97.67 98.25 98.81 97.33 NA 100.00 97.22 93.33 100.00 100.00 95.83 100.00 100.00 97.67 99.07 100.00 96.67 100.00 100.00 100.00 100.00 97.96 NA 92.86 100.00 98.31 100.00 NA 100.00 97.30 100.00 100.00 97.30 100.00 100.00 NA 97.62 100.00 100.00 96.97 98.08 100.00 100.00 98.84 100.00 98.11 96.15 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG12753,CG14894,RI_chr3R_12268071_12268135,RI_chr3R_12268071_12268141,RI_chr3R_12268071_12268661,Pak3 chr3R - chr3R_12268071_12268661;chr3R_12268071_12268145;chr3R_12268071_12268141;chr3R_12268071_12268135 chr3R_12268071_12268124 chr3R_12267971_12268070;chr3R_12268662_12268688 88.52 88.33 87.72 86.84 91.30 84.31 88.52 92.96 91.82 86.21 82.61 92.22 88.89 93.33 85.29 89.23 87.50 84.21 92.16 86.07 82.98 89.39 90.67 91.25 88.37 92.98 81.03 80.65 84.13 86.79 79.17 87.95 88.24 86.67 88.46 70.69 84.62 87.93 90.14 91.18 90.91 90.27 86.36 88.68 92.52 89.19 89.13 93.48 88.42 89.58 90.28 83.33 89.19 85.29 90.62 89.87 90.00 88.61 K jcn_only_AD CG13895,RI_chr3L_707623_707678,RI_chr3L_711692_711744 chr3L - chr3L_707623_707889 chr3L_707623_707678 chr3L_707523_707622;chr3L_707890_707997 4.21 2.83 3.36 2.30 4.21 3.70 7.57 6.37 4.67 5.26 4.50 5.82 4.44 4.40 3.97 8.78 6.58 2.00 5.13 1.62 5.69 5.93 1.76 4.76 4.42 1.89 6.29 2.54 1.08 4.23 8.66 3.11 2.65 9.09 4.50 1.81 4.57 5.32 5.35 3.20 2.18 3.24 4.41 3.68 2.30 4.21 3.52 2.44 3.60 5.70 7.64 1.54 2.84 4.44 3.91 6.80 3.27 0.37 K jcn_only_AD Ras85D,I_chr3R_5338160_5338509,EI_chr3R_5338175_5338279,I_chr3R_5338175_5338299 chr3R - chr3R_5338175_5338299;chr3R_5338175_5338279 chr3R_5338175_5338509 chr3R_5338075_5338174;chr3R_5338510_5338609 96.83 96.09 95.95 96.50 98.36 96.86 97.53 97.35 96.43 97.08 96.83 97.69 98.18 97.16 98.53 96.90 95.61 95.20 97.42 96.07 99.17 96.29 93.94 95.94 97.12 97.18 94.90 92.09 96.94 96.77 95.12 97.57 98.45 98.30 96.86 96.28 97.36 94.27 96.76 96.22 98.53 96.10 97.44 93.26 98.47 98.07 97.12 96.76 97.45 96.38 92.95 97.56 94.77 94.74 96.91 95.07 95.07 96.46 K jcn_only_AD CG9821,I_chr3R_4644986_4645248,I_chr3R_4644986_4645577,I_chr3R_4644986_4645648,I_chr3R_4644986_4646263,RI_chr3R_4644986_4646264,RI_chr3R_4645903_4646033 chr3R - chr3R_4644986_4645577;chr3R_4644986_4646033;chr3R_4644986_4645649 chr3R_4644986_4645248 chr3R_4644886_4644985;chr3R_4646034_4646133 0.00 0.00 0.43 0.00 0.58 0.00 0.00 0.17 0.13 0.00 0.00 0.37 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.84 0.30 0.00 0.71 0.00 0.00 0.00 1.24 0.00 0.29 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention crol,snoRNA:Me18S-A934,I_chr2L_11799403_11802904 chr2L - chr2L_11797742_11798664 chr2L_11797741_11797742;chr2L_11798664_11798665 chr2L_11797682_11797741;chr2L_11798665_11799010 10.53 20.00 5.56 14.29 0.00 NA 17.65 NA 12.20 0.00 10.53 20.00 14.29 NA 8.33 25.00 NA NA NA 11.76 12.50 21.78 3.33 15.62 8.70 NA 25.93 21.57 9.80 2.70 NA NA 10.64 22.73 0.00 11.36 10.26 5.00 22.86 5.56 0.00 16.67 NA 0.00 4.44 10.71 10.53 8.33 6.67 12.50 21.43 NA 6.25 NA 0.00 NA NA 0.00 K intron_retention CG4769 chr3L + chr3L_5353512_5353791 chr3L_5353511_5353512;chr3L_5353791_5353792 chr3L_5353219_5353511;chr3L_5353792_5353839 1.07 1.12 0.00 2.03 2.17 1.63 0.98 0.56 1.72 3.49 0.00 1.07 0.00 2.22 0.00 0.00 1.15 0.00 1.80 0.74 0.00 1.18 0.00 0.79 0.00 0.00 1.98 0.81 2.88 1.35 1.57 0.00 0.00 2.22 2.05 0.00 0.00 0.00 1.31 0.50 1.38 1.32 2.04 1.89 1.04 0.82 0.82 2.75 1.26 3.38 0.39 1.85 0.93 0.97 0.68 2.20 1.45 3.38 K intron_retention CG15695 chr3R + chr3R_16669102_16669169 chr3R_16669101_16669102;chr3R_16669169_16669170 chr3R_16668807_16669101;chr3R_16669170_16670801 0.00 0.00 0.00 8.93 0.00 NA 0.00 1.43 0.00 NA 0.00 0.00 0.00 0.00 0.00 6.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 NA NA NA NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA NA 3.45 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AD CG12163,I_chr3R_1068862_1077145,RI_chr3R_1069977_1077139 chr3R - chr3R_1069977_1077145 chr3R_1069977_1077139 chr3R_1069877_1069976;chr3R_1077146_1077239 0.00 NA NA NA NA NA NA NA NA NA NA 4.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 2.78 NA NA 3.77 NA NA NA 0.00 0.00 4.76 NA NA 0.00 0.00 NA 2.94 NA NA NA NA NA NA NA NA NA 0.00 K jcn_only_AA msps,I_chr3R_11877071_11877796 chr3R + chr3R_11885407_11885463 chr3R_11885407_11885460 chr3R_11885207_11885406;chr3R_11885464_11886397 99.25 99.52 99.52 99.06 98.57 98.99 98.38 98.29 99.10 100.00 99.24 99.48 99.48 100.00 98.56 99.08 99.45 98.82 99.55 97.51 99.47 99.07 99.38 99.09 99.51 100.00 98.98 99.25 100.00 99.48 99.58 98.81 99.17 99.71 99.07 98.95 98.41 98.47 98.21 99.25 98.98 99.32 98.75 98.51 100.00 98.70 98.85 99.65 99.43 99.68 98.38 99.32 99.29 99.44 99.66 98.82 99.25 99.58 K intron_retention Art8 chr2L - chr2L_11010898_11010953 chr2L_11010897_11010898;chr2L_11010953_11010954 chr2L_11009879_11010897;chr2L_11010954_11011077 30.00 39.13 31.25 15.38 21.05 9.09 25.00 35.71 22.86 55.56 12.50 18.92 38.89 15.38 22.22 19.30 40.00 10.53 15.38 16.07 20.00 23.08 62.07 30.00 NA 13.33 31.25 NA NA 46.15 35.48 29.41 58.33 34.38 27.27 NA 33.33 NA 30.43 37.04 41.67 27.03 22.22 35.29 35.71 46.43 21.88 NA 27.78 44.00 39.29 33.33 8.33 33.33 16.67 41.38 31.03 13.04 K intron_retention l(2)03709,I_chr2R_14707617_14707700,I_chr2R_14708048_14708095 chr2R + chr2R_14708789_14709480 chr2R_14708788_14708789;chr2R_14709480_14709481 chr2R_14708689_14708788;chr2R_14709481_14709793 22.99 22.78 25.23 66.67 22.12 25.88 52.66 47.09 29.17 7.69 35.21 33.77 32.81 38.24 27.62 39.71 31.58 19.15 41.51 20.51 22.62 13.71 19.91 18.60 31.78 47.06 31.13 21.15 22.99 17.65 33.65 12.84 11.43 42.11 29.31 45.45 12.79 17.70 17.86 20.10 30.23 29.13 45.83 21.05 7.24 19.82 16.93 12.82 40.88 16.08 27.65 24.22 21.55 18.82 28.57 21.90 22.27 15.25 K alternative_donor I_chr3L_7374787_7375310,smid,I_chr3L_7375166_7375310,I_chr3L_7375435_7375508 chr3L + chr3L_7375112_7375310;chr3L_7375255_7375310 chr3L_7375166_7375310 chr3L_7375311_7375410;chr3L_7375066_7375111 1.41 0.00 2.04 1.92 0.00 2.63 0.00 2.38 2.27 0.00 0.00 0.00 0.00 0.00 1.96 1.03 4.17 0.00 0.00 1.41 0.00 0.00 1.90 0.00 2.44 0.00 1.54 2.00 5.00 1.82 0.00 0.00 2.38 2.56 2.38 0.00 1.00 0.00 0.00 2.91 0.00 1.37 3.70 1.92 0.00 3.92 1.61 1.49 2.22 0.00 2.90 0.00 2.44 0.00 1.96 1.75 1.75 0.00 K intron_retention CG1309 chr3L + chr3L_4260972_4261037 chr3L_4260971_4260972;chr3L_4261037_4261038 chr3L_4260368_4260971;chr3L_4261038_4261305 1.49 0.00 3.77 1.19 0.00 0.00 0.00 3.49 0.00 0.00 0.00 0.00 0.00 2.70 2.13 5.17 2.70 2.04 0.00 5.71 0.00 1.52 0.00 0.00 0.00 0.00 4.29 4.35 0.00 3.70 2.78 3.85 4.65 1.54 0.00 0.00 3.39 2.74 1.49 3.70 0.00 1.20 3.57 1.67 0.00 4.65 0.00 0.00 6.58 1.59 1.59 6.67 0.00 0.00 2.38 0.00 2.30 0.00 K intron_retention I_chr3R_10615218_10615284,CG33330,E_chr3R_10619581_10621068,F_chr3R_10620137_10620250 chr3R + chr3R_10619611_10620250 chr3R_10619610_10619611;chr3R_10620250_10620251 chr3R_10619443_10619610;chr3R_10620251_10620350 39.45 45.45 26.67 87.50 NA 60.00 66.67 76.19 32.43 35.71 NA 12.50 NA 50.00 21.43 50.00 41.67 NA 42.11 38.89 NA 40.74 28.12 28.57 46.15 NA 50.00 61.90 NA 35.71 43.75 NA 15.38 37.93 35.71 22.22 30.77 27.78 43.75 56.25 58.33 34.48 36.36 35.29 NA 33.33 43.75 NA 50.00 16.67 47.06 40.00 NA NA 37.50 57.14 25.00 NA K intron_retention oho23B,I_chr2L_2856176_2856244,I_chr2L_2856573_2856630,RI_chr2L_2856673_2856772 chr2L + chr2L_2856306_2856376 chr2L_2856305_2856306;chr2L_2856376_2856377 chr2L_2856279_2856305;chr2L_2856377_2856568 0.03 0.02 0.04 0.01 0.02 0.00 0.03 0.00 0.01 0.12 0.00 0.04 0.04 0.00 0.03 0.00 0.02 0.00 0.00 0.04 0.02 0.17 0.03 0.05 0.13 0.10 0.16 0.30 0.55 0.03 0.00 0.08 0.05 0.00 0.00 0.08 0.02 0.02 0.01 0.08 0.12 0.04 0.00 0.02 0.07 0.10 0.05 0.12 0.11 0.04 0.00 0.00 0.04 0.02 0.03 0.02 0.03 0.15 K jcn_only_AD CG14182,RI_chr3L_19972689_19972802 chr3L - chr3L_19972689_19972802 chr3L_19972689_19972756 chr3L_19972589_19972688;chr3L_19972803_19972902 91.84 90.32 89.29 85.71 NA NA 86.96 100.00 89.74 NA NA 91.49 NA NA 92.86 91.67 NA NA 95.45 96.00 NA 82.50 94.12 96.77 75.00 NA 100.00 NA 93.10 92.50 NA 84.38 95.00 96.30 NA NA 97.22 93.75 93.75 92.00 NA 93.10 NA 96.30 89.29 96.97 88.00 88.57 85.29 88.46 84.62 NA 96.00 80.00 90.48 89.74 95.12 88.89 K intron_retention CG3812 chrX + chrX_12659637_12661001 chrX_12659636_12659637;chrX_12661001_12661002 chrX_12659301_12659636;chrX_12661002_12661387 96.30 90.91 100.00 95.24 100.00 93.33 100.00 96.30 97.30 NA 88.89 100.00 92.31 95.00 93.33 97.37 91.67 100.00 94.74 96.30 NA NA NA NA NA 100.00 NA NA NA 90.00 100.00 NA 81.82 93.55 100.00 NA NA NA NA NA NA 96.67 100.00 NA NA 100.00 NA 100.00 97.44 NA 90.00 NA NA NA 95.45 NA NA 93.33 K intron_retention CG32758 chrX - chrX_5616174_5616240 chrX_5616173_5616174;chrX_5616240_5616241 chrX_5615995_5616173;chrX_5616241_5617076 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chr3R_205772_205830,Cont,I_chr3R_207254_207600 chr3R + chr3R_211941_212001 chr3R_211940_211941;chr3R_212001_212002 chr3R_211772_211940;chr3R_212002_212135 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 5.88 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention Ark,I_chr2R_12909344_12909416,RI_chr2R_12912984_12913058 chr2R + chr2R_12910055_12910107 chr2R_12910054_12910055;chr2R_12910107_12910108 chr2R_12909417_12910054;chr2R_12910108_12910231 0.00 NA 0.00 4.76 0.00 0.00 2.94 0.00 4.55 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 2.56 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 2.70 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K alternative_acceptor Sin3A,RI_chr2R_8469457_8469793,I_chr2R_8473578_8480185,RI_chr2R_8479951_8480233 chr2R - chr2R_8469445_8469793 chr2R_8469457_8469793 chr2R_8469794_8469893;chr2R_8469357_8469444 18.33 16.92 17.78 21.21 15.79 16.28 8.57 28.95 18.11 23.08 15.79 13.98 15.52 8.70 13.73 24.68 18.75 15.69 17.86 21.43 16.33 25.56 20.78 14.58 26.32 27.27 10.00 12.09 15.52 23.33 22.73 20.00 23.08 21.18 22.73 30.14 19.51 19.18 22.03 21.67 21.74 15.38 21.43 13.83 19.61 18.87 13.64 25.56 18.35 11.76 14.66 14.89 18.33 21.62 16.36 15.94 14.55 16.67 K intron_retention CG7656,I_chr3L_15580697_15581083 chr3L - chr3L_15579695_15580104 chr3L_15579694_15579695;chr3L_15580104_15580105 chr3L_15578904_15579694;chr3L_15580105_15580380 3.17 2.90 4.26 8.51 0.00 6.90 0.00 3.92 2.04 0.00 5.88 4.35 0.00 7.41 3.23 2.94 2.70 0.00 7.41 3.67 0.00 6.19 2.04 3.37 3.77 0.00 3.17 2.53 2.38 0.00 0.00 0.00 1.85 4.11 2.13 7.41 5.68 3.03 2.68 5.26 2.70 6.38 3.85 3.77 3.77 2.94 6.41 2.44 6.59 3.41 5.19 2.56 2.67 5.06 10.53 3.37 2.25 0.00 K intron_retention RanBPM chr2R + chr2R_6321879_6321931 chr2R_6321878_6321879;chr2R_6321931_6321932 chr2R_6321779_6321878;chr2R_6321932_6322095 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.31 3.95 2.11 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N cassette CG32521,CREF_chrX_21082827_21152068,EF_chrX_21094675_21152068 chrX - chrX_21082827_21150208;chrX_21082827_21152072 chrX_21082827_21094606;chrX_21094675_21150208,chrX_21094675_21152072 chrX_21094607_21094674 chrX_21082727_21082826;chrX_21152073_21152168 73.33 75.00 73.33 78.43 75.00 84.62 75.00 72.97 75.00 50.00 50.00 80.00 78.57 86.67 72.73 73.91 70.59 77.78 75.00 78.57 NA 46.88 78.57 69.23 70.00 70.59 66.67 75.00 63.16 55.56 78.95 NA 66.67 82.14 78.57 88.89 76.47 60.00 73.33 47.62 40.00 72.73 87.50 58.82 41.67 71.43 70.00 63.64 74.36 50.00 58.33 75.00 66.67 90.00 80.95 90.91 65.00 66.67 K multi_cassette CG41378,I_chr2RHet_1545717_1605870,I_chr2RHet_1545717_1621473,I_chr2RHet_1545717_1621569,I_chr2RHet_1606049_1607768,RI_chr2RHet_1606049_1621284,noncoding_9480 chr2RHet - chr2RHet_1545717_1621569 chr2RHet_1545717_1605712;chr2RHet_1605787_1605870;chr2RHet_1606049_1621569 chr2RHet_1605713_1605786;chr2RHet_1605871_1606048 chr2RHet_1545666_1545716;chr2RHet_1621570_1621573 33.33 NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG4502,I_chr2L_7196721_7196787,I_chr2L_7196858_7204207 chr2L - chr2L_7196858_7203938;chr2L_7196858_7203934 chr2L_7196858_7203942 chr2L_7196788_7196857;chr2L_7203943_7204239 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 2.50 NA 2.38 1.82 0.00 2.33 2.13 0.00 0.00 2.94 0.00 0.00 3.85 NA 4.26 0.00 NA 0.00 0.00 NA 0.00 0.00 2.70 0.00 2.50 1.15 0.00 0.00 NA NA 4.35 5.00 0.00 2.90 2.44 0.00 NA 0.00 0.00 4.29 3.33 0.00 6.25 0.00 NA NA 0.00 0.00 NA 0.00 K alternative_acceptor CG6448,I_chr2L_22141769_22141830 chr2L + chr2L_22141769_22141833 chr2L_22141769_22141830 chr2L_22141669_22141768;chr2L_22141834_22141930 0.00 NA 0.00 5.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 5.56 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 NA 5.88 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA NA 0.00 NA 2.38 0.00 NA 0.00 6.67 NA NA NA NA NA 0.00 K intron_retention CG12004 chr3L + chr3L_1572783_1572968 chr3L_1572782_1572783;chr3L_1572968_1572969 chr3L_1572524_1572782;chr3L_1572969_1573308 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pkc98E chr3R + chr3R_24868580_24870088 chr3R_24868579_24868580;chr3R_24870088_24870089 chr3R_24868552_24868579;chr3R_24870089_24870159 27.31 33.33 NA 23.53 NA NA NA NA 29.63 NA NA 30.43 NA NA NA NA NA NA 16.67 9.09 NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA 22.22 NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG8709,I_chr2R_4027128_4027182,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030636,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4030580_4033256;chr2R_4030580_4030636 chr2R_4030580_4033259 chr2R_4030480_4030579;chr2R_4033260_4033265 96.15 93.33 98.18 98.21 97.22 96.49 95.58 98.02 97.83 87.50 97.73 94.96 96.97 97.92 95.56 98.68 93.10 100.00 95.45 94.23 95.12 94.12 91.92 95.00 100.00 98.39 93.90 91.67 91.84 94.83 100.00 96.55 89.80 98.04 95.45 96.15 95.31 97.37 98.46 95.38 93.10 97.56 96.23 93.55 88.00 97.62 100.00 91.11 96.70 97.44 96.74 97.73 94.74 88.46 94.37 97.50 100.00 92.00 K intron_retention CG2225,Ef2b chr2L - chr2L_21679403_21679483 chr2L_21679402_21679403;chr2L_21679483_21679484 chr2L_21677916_21679402;chr2L_21679484_21680180 0.06 0.05 0.07 0.07 0.04 0.03 0.00 0.06 0.07 0.00 0.11 0.06 0.07 0.10 0.00 0.06 0.08 0.00 0.10 0.04 0.00 0.04 0.08 0.00 0.03 0.00 0.14 0.32 0.11 0.06 0.03 0.09 0.13 0.04 0.03 0.07 0.08 0.08 0.09 0.15 0.16 0.06 0.00 0.00 0.03 0.10 0.02 0.16 0.06 0.09 0.07 0.00 0.08 0.00 0.05 0.00 0.08 0.16 K jcn_only_AA Mec2,I_chrX_19082929_19083066,I_chrX_19083581_19083676 chrX + chrX_19083581_19083676 chrX_19083581_19083672 chrX_19083481_19083580;chrX_19083677_19083776 99.72 100.00 99.61 99.78 100.00 99.79 99.70 100.00 99.90 99.64 99.74 99.90 100.00 99.73 99.83 100.00 99.76 100.00 99.49 99.80 100.00 99.51 98.09 99.06 98.79 99.77 100.00 99.39 99.49 99.76 97.74 99.23 99.44 99.69 98.59 98.87 99.90 100.00 99.44 99.54 99.76 99.72 99.74 100.00 99.64 99.62 99.24 99.11 99.76 99.39 99.36 99.61 99.88 99.36 99.66 99.63 99.81 100.00 N jcn_only_AD CG42231,chif,CaBP1 chr2L - chr2L_16349473_16351926 chr2L_16349473_16349986 chr2L_16347464_16349472;chr2L_16351927_16352093 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 12.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K intron_retention CG5780 chr2L - chr2L_12694816_12694873 chr2L_12694815_12694816;chr2L_12694873_12694874 chr2L_12694589_12694815;chr2L_12694874_12694960 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 14.29 NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 K intron_retention Xbp1 chr2R + chr2R_17031642_17031705 chr2R_17031641_17031642;chr2R_17031705_17031706 chr2R_17031474_17031641;chr2R_17031706_17032006 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.49 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,I_chr2R_15350149_15350210,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350149_15351814;chr2R_15350905_15351814;chr2R_15350437_15351814 chr2R_15350285_15351814 chr2R_15351815_15351914;chr2R_15350068_15350148 14.29 14.29 0.00 25.00 33.33 20.00 27.78 28.57 27.27 0.00 0.00 14.29 0.00 20.00 25.00 25.00 11.11 33.33 10.00 23.81 28.57 20.00 8.33 18.18 0.00 0.00 14.29 0.00 0.00 9.09 14.29 0.00 0.00 13.64 0.00 21.43 20.00 0.00 20.00 21.43 0.00 11.76 10.00 0.00 NA 0.00 20.00 0.00 18.52 33.33 21.43 33.33 20.00 0.00 28.57 0.00 42.86 0.00 K jcn_only_AA cals,I_chr4_1136706_1138476,I_chr4_1136881_1136951,I_chr4_1139644_1142084,RI_chr4_1141233_1142084 chr4 - chr4_1136706_1136951 chr4_1136881_1136951 chr4_1136952_1137051;chr4_1136606_1136705 0.00 1.85 0.00 0.00 0.00 0.00 1.80 0.00 0.69 4.35 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 1.45 1.14 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 NA K jcn_only_AA Zyx102EF,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1081280_1081366;chr4_1081261_1081366 chr4_1081286_1081366 chr4_1081367_1081379;chr4_1081180_1081260 29.17 NA NA NA NA NA 23.33 30.77 39.13 NA NA 35.00 NA NA NA 33.33 NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 29.17 NA NA NA NA NA NA NA 19.05 NA NA NA NA NA NA 28.00 NA NA NA NA NA NA NA NA NA K alternative_last_exon Nurf-38 chr2R - chr2R_20446656_20446977 chr2R_20446888_20446977 chr2R_20446425_20446655 chr2R_20446690_20446887 chr2R_20446978_20447087 0.62 0.70 0.60 0.44 0.00 1.25 0.52 0.38 0.95 1.15 1.03 1.09 0.00 0.00 1.10 0.67 0.91 0.72 0.65 0.29 0.85 0.97 0.47 0.54 0.00 0.70 1.57 5.06 2.11 0.00 0.58 0.80 0.00 0.83 0.84 0.00 0.63 0.71 0.52 0.47 0.46 0.68 0.73 0.63 0.00 0.00 0.47 0.79 0.62 0.45 0.53 0.00 0.58 0.53 1.20 0.49 0.30 0.73 K alternative_acceptor CG18659,E_chr2R_5011363_5019110,RI_chr2R_5013572_5014531,I_chr2R_5016147_5016997 chr2R - chr2R_5011645_5012248 chr2R_5011651_5012248 chr2R_5012249_5012725;chr2R_5011194_5011644 95.00 94.74 93.94 90.48 93.10 96.67 97.14 100.00 93.75 93.75 95.45 90.16 85.71 81.48 88.89 95.00 100.00 100.00 96.30 94.38 92.86 96.88 89.06 94.74 92.68 95.65 98.18 94.29 95.00 93.33 96.88 97.37 93.44 92.45 97.30 97.06 97.26 97.30 97.14 92.42 92.11 95.24 100.00 100.00 95.00 98.00 97.87 100.00 95.45 93.48 88.00 95.45 89.66 93.88 96.88 97.37 93.88 97.44 N multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2814327_2817753 chr2R_2814327_2816013;chr2R_2816342_2816577;chr2R_2816779_2817753 chr2R_2816014_2816341;chr2R_2816578_2816778 chr2R_2814227_2814326;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.25 100.00 98.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.36 100.00 100.00 100.00 100.00 K jcn_only_AD CG40263,F_chr2RHet_1265687_1293040,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1265687_1286307;chr2RHet_1265687_1291241 chr2RHet_1265687_1286305 chr2RHet_1265587_1265686 77.03 NA NA NA NA NA NA 74.07 92.59 NA NA NA NA NA NA NA NA NA NA 82.93 NA NA NA NA NA NA NA NA NA NA 64.00 NA NA 50.00 NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG17159,CG17162,noncoding_25215 chrXHet - chrXHet_69232_75250;chrXHet_69232_75430 chrXHet_69232_75279 chrXHet_69195_69231;chrXHet_75431_75453 24.32 6.67 22.73 30.30 16.67 14.29 34.48 27.27 17.78 41.67 6.25 16.13 14.29 36.84 20.00 23.08 26.67 50.00 13.04 25.00 43.75 20.00 22.22 20.00 30.77 22.73 7.69 25.00 36.36 30.77 14.29 37.50 0.00 24.32 10.00 29.41 27.78 16.67 14.29 36.36 25.00 27.78 35.00 7.69 60.00 50.00 37.50 45.83 23.91 40.00 16.67 21.43 14.29 33.33 32.00 14.29 28.57 20.00 K intron_retention gatA chr3R - chr3R_14854080_14854139 chr3R_14854079_14854080;chr3R_14854139_14854140 chr3R_14853837_14854079;chr3R_14854140_14854387 0.00 0.00 0.00 12.50 0.00 0.00 5.00 0.00 2.00 NA 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 3.85 9.09 0.00 0.00 4.55 10.34 4.55 NA 14.29 0.00 12.50 0.00 0.00 0.00 0.00 13.33 0.00 3.45 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 K cassette gus,I_chr2R_1009158_1009345,RI_chr2R_1009158_1011540,I_chr2R_1009346_1015730 chr2R - chr2R_1009158_1015730;chr2R_1009158_1009487 chr2R_1009158_1009241;chr2R_1009346_1015730,chr2R_1009346_1009487 chr2R_1009242_1009345 chr2R_1009058_1009157;chr2R_1015731_1015742 13.04 9.68 7.69 25.00 5.00 4.17 6.00 11.43 17.81 NA 9.52 16.33 19.23 6.45 6.45 10.00 9.68 15.00 13.95 7.55 6.67 18.18 16.13 18.52 17.65 3.45 17.39 25.00 0.00 12.50 5.56 21.43 NA 17.86 8.70 NA 14.29 18.75 NA 10.34 6.67 15.09 19.35 5.56 6.67 20.00 16.67 11.11 15.09 16.67 9.68 14.29 10.53 15.00 6.82 20.69 13.04 17.39 K alternative_donor l(2)gl,I_chr2L_12929_13559,I_chr2L_12929_13682,I_chr2L_15712_16650,I_chr2L_17208_18260,I_chr2L_17213_21135,RI_chr2L_20021_20830,I_chr2L_20974_21065 chr2L - chr2L_12929_13559 chr2L_12929_13519 chr2L_12829_12928;chr2L_13560_13625 100.00 98.68 99.07 100.00 100.00 97.78 100.00 100.00 100.00 100.00 98.00 99.42 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.47 98.51 100.00 100.00 99.03 100.00 95.24 100.00 100.00 98.84 99.24 96.40 100.00 98.68 99.31 100.00 100.00 100.00 98.94 99.29 98.18 100.00 99.44 100.00 99.07 100.00 99.01 100.00 99.48 99.35 100.00 100.00 100.00 98.28 100.00 100.00 100.00 100.00 99.28 K intron_retention B52,E_chr3R_9488770_9491174 chr3R + chr3R_9491624_9491805 chr3R_9491623_9491624;chr3R_9491805_9491806 chr3R_9491312_9491623;chr3R_9491806_9491970 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.22 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6310 chr3L - chr3L_11062677_11062747 chr3L_11062676_11062677;chr3L_11062747_11062748 chr3L_11062468_11062676;chr3L_11062748_11063083 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 N alternative_donor Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19562143_19562326 chr2R_19562175_19562326 chr2R_19562327_19562386;chr2R_19561937_19562142 2.70 1.00 2.75 2.01 3.70 1.18 1.72 2.58 1.91 0.00 3.03 2.82 4.11 3.49 2.80 1.64 0.95 3.53 3.03 1.61 5.06 18.94 3.88 4.88 3.33 0.97 10.75 0.00 6.49 2.11 4.00 2.33 1.01 1.16 4.48 1.22 3.85 3.45 3.31 2.34 3.39 2.70 3.12 1.67 1.87 2.04 4.55 0.85 2.06 2.00 4.69 3.85 0.00 2.04 2.83 2.99 1.30 0.00 K intron_retention ade5,I_chrX_12653069_12653157 chrX - chrX_12653641_12653744 chrX_12653640_12653641;chrX_12653744_12653745 chrX_12653496_12653640;chrX_12653745_12653945 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.82 0.56 0.00 0.00 0.00 0.62 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG5973,I_chr2L_7441485_7443583,I_chr2L_7443388_7443583 chr2L + chr2L_7440963_7443583;chr2L_7440852_7443583;chr2L_7441757_7443583 chr2L_7440959_7443583 chr2L_7443584_7443683;chr2L_7440710_7440851 63.54 52.94 73.91 64.29 62.50 50.00 57.50 62.07 63.44 44.44 72.88 58.33 59.52 48.00 44.12 64.29 65.52 58.82 73.33 62.00 69.57 77.78 63.64 50.00 85.71 59.26 73.33 80.00 50.00 71.43 40.00 70.00 75.00 56.76 71.43 61.54 63.64 100.00 84.62 70.59 NA 58.97 60.00 60.00 66.67 80.00 70.00 46.15 59.38 61.90 63.64 71.43 57.14 81.82 59.46 77.78 73.33 61.54 K intron_retention Sec16,I_chrX_12501913_12502010,I_chrX_12502899_12502973 chrX + chrX_12500187_12501730 chrX_12500186_12500187;chrX_12501730_12501731 chrX_12499836_12500186;chrX_12501731_12501912 29.41 NA NA NA NA NA NA NA NA 29.41 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD NijA chr3L - chr3L_10688805_10689678 chr3L_10688805_10689666 chr3L_10688729_10688804;chr3L_10689679_10689954 52.00 50.00 NA 54.17 NA NA NA 40.00 56.92 NA NA 23.08 NA NA NA 56.52 NA NA NA 44.07 NA 60.78 60.47 64.29 NA NA 52.17 62.50 NA 34.21 NA 56.67 65.52 48.72 54.55 NA 29.63 48.28 60.00 32.73 40.00 52.00 NA 53.85 46.51 65.31 57.58 46.67 41.67 45.71 43.33 56.25 53.57 48.00 NA 55.00 49.06 47.46 K intron_retention Aats-asp chr2R + chr2R_8767886_8768274 chr2R_8767885_8767886;chr2R_8768274_8768275 chr2R_8767806_8767885;chr2R_8768275_8768375 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.49 0.65 1.09 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.57 0.00 0.00 0.00 0.44 2.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 1.12 K alternative_donor Best1,I_chr3R_5991957_5995913,RI_chr3R_5993184_5995905 chr3R - chr3R_5989579_5990296;chr3R_5989579_5990440 chr3R_5989579_5990058 chr3R_5988921_5989578;chr3R_5990441_5990683 6.29 3.70 6.33 3.92 3.95 4.23 6.33 6.84 7.06 1.08 7.58 4.00 9.33 7.23 5.26 6.45 3.45 8.77 8.11 3.55 7.04 39.77 6.29 7.03 7.58 5.08 5.36 2.94 9.09 6.25 9.28 10.20 12.68 6.56 6.67 2.74 4.70 4.46 5.26 6.45 2.99 2.70 4.62 6.78 8.00 7.21 2.38 10.14 6.72 5.13 8.73 4.94 0.00 3.45 8.14 3.96 3.03 3.03 K jcn_only_AD pelo,I_chr2L_9707821_9708144,I_chr2L_9707891_9708144,I_chr2L_9708081_9708144 chr2L + chr2L_9708081_9708144;chr2L_9706747_9708144;chr2L_9707821_9708144 chr2L_9707891_9708144 chr2L_9708145_9708244;chr2L_9706647_9706746 0.00 0.00 1.82 0.00 0.00 0.00 0.00 1.01 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 3.39 0.00 0.85 0.00 0.00 2.50 0.00 0.00 0.85 0.00 0.00 1.82 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG12576,RI_chrX_21878289_21882347,I_chrX_21882735_21882809,I_chrX_21882735_21883407,I_chrX_21882735_21883467,I_chrX_21882735_21883620,I_chrX_21882735_21883714 chrX - chrX_21882732_21883750 chrX_21882735_21883750 chrX_21883751_21883814;chrX_21882635_21882731 81.40 81.08 85.71 85.94 85.71 73.33 78.57 84.42 78.43 82.61 87.88 78.57 80.56 75.00 78.38 81.48 82.05 82.76 77.78 80.77 71.79 92.16 80.39 76.67 80.95 86.21 78.12 66.67 72.55 81.40 84.21 77.42 84.51 80.60 90.91 87.10 89.19 83.33 84.85 85.42 82.76 79.37 78.12 82.00 87.88 80.39 74.36 84.51 84.72 66.67 88.89 70.97 82.61 78.95 81.40 90.32 79.31 79.01 K intron_retention CG2950,I_chr2L_4844647_4845086,I_chr2L_4844952_4845086 chr2L - chr2L_4845159_4845253 chr2L_4845158_4845159;chr2L_4845253_4845254 chr2L_4845092_4845158;chr2L_4845254_4845575 4.88 4.08 3.85 4.84 4.26 3.92 9.62 11.11 6.36 0.00 5.71 8.24 18.75 11.36 9.26 7.41 0.00 5.13 7.55 2.75 2.13 3.03 6.02 9.62 8.82 2.94 9.52 15.00 0.00 8.00 1.47 13.64 0.00 8.16 0.00 0.00 2.90 4.88 4.69 4.88 4.35 4.55 3.33 0.00 5.41 5.41 6.98 5.13 7.89 5.71 3.45 10.81 0.00 6.25 5.13 4.76 0.00 0.00 K intron_retention RpL29,I_chr2R_17184688_17191389 chr2R + chr2R_17181295_17181558 chr2R_17181294_17181295;chr2R_17181558_17181559 chr2R_17181294_17181294;chr2R_17181559_17181664 60.00 70.00 NA 75.00 NA NA NA NA 47.62 NA 15.38 36.36 NA NA NA NA NA NA 53.33 42.86 NA NA NA NA NA 50.00 NA NA 91.67 NA NA 69.23 77.78 56.25 NA NA NA NA NA 84.62 60.00 68.18 45.45 NA 75.00 69.23 NA 83.33 42.86 NA NA NA 60.00 NA 40.00 NA 54.55 69.57 K intron_retention CG1665,RI_chr2R_5731409_5731653,I_chr2R_5732410_5732504 chr2R + chr2R_5727340_5727397 chr2R_5727339_5727340;chr2R_5727397_5727398 chr2R_5727334_5727339;chr2R_5727398_5728020 0.00 NA 0.00 12.90 0.00 10.00 0.00 2.38 0.00 NA 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 6.67 0.00 3.45 5.56 NA NA NA 0.00 NA NA NA NA 7.14 0.00 6.25 0.00 NA NA NA NA NA 8.70 NA 3.17 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K alternative_acceptor Ide,I_chr3L_20366301_20366354,I_chr3L_20368434_20368519,I_chr3L_20368443_20368519 chr3L - chr3L_20368434_20368519;chr3L_20368462_20368519 chr3L_20368443_20368519 chr3L_20368520_20368619;chr3L_20368343_20368433 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 7.69 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 7.69 0.00 8.70 0.00 0.00 6.25 4.17 0.00 8.57 0.00 6.90 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 4.00 5.88 0.00 0.00 K intron_retention Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654157,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15646367_15646425 chrX_15646366_15646367;chrX_15646425_15646426 chrX_15645901_15646366;chrX_15646426_15646505 0.00 0.00 0.00 2.06 0.00 0.00 0.00 1.75 0.00 0.00 0.00 2.97 0.00 0.00 0.00 1.33 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 2.70 3.45 5.08 0.00 18.52 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6145,noncoding_6597 chr2R - chr2R_9425555_9425702 chr2R_9425554_9425555;chr2R_9425702_9425703 chr2R_9425381_9425554;chr2R_9425703_9426360 0.00 0.00 0.00 0.00 NA 0.00 0.00 7.14 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG1354,I_chrX_9672972_9673084,I_chrX_9673026_9673084 chrX + chrX_9673026_9673084;chrX_9672972_9673084;chrX_9672967_9673084 chrX_9672947_9673084 chrX_9673085_9673184;chrX_9672926_9672946 97.85 97.75 98.53 97.85 100.00 100.00 100.00 100.00 97.20 100.00 96.77 96.25 100.00 100.00 96.97 100.00 100.00 100.00 96.23 95.76 100.00 100.00 98.72 97.96 100.00 96.88 96.97 100.00 98.21 98.31 97.01 98.00 98.39 96.55 100.00 97.83 97.06 96.30 100.00 97.17 96.55 96.77 100.00 98.88 97.14 97.00 100.00 97.78 96.34 95.08 96.67 91.67 95.00 97.80 94.34 97.14 98.59 98.02 K alternative_acceptor CG42553,I_chr3L_834336_834491 chr3L + chr3L_834336_834491 chr3L_834336_834391 chr3L_834236_834335;chr3L_834492_834591 96.77 90.32 96.55 100.00 94.74 100.00 98.75 100.00 98.08 83.33 95.83 97.96 100.00 95.45 96.43 97.92 95.45 100.00 100.00 97.73 95.45 88.57 100.00 94.59 97.06 100.00 96.15 97.56 97.78 92.31 91.49 94.44 95.00 97.62 96.77 90.24 100.00 96.43 93.75 89.19 96.88 100.00 95.65 97.56 90.91 97.73 96.77 91.30 100.00 97.73 95.35 89.29 92.31 96.88 100.00 94.87 97.22 94.74 K intron_retention spz chr3R - chr3R_22892388_22892843 chr3R_22892387_22892388;chr3R_22892843_22892844 chr3R_22892330_22892387;chr3R_22892844_22892921 25.86 25.60 19.79 27.56 25.61 24.00 53.09 19.64 31.45 25.86 23.16 37.86 25.47 28.41 32.81 23.18 20.59 16.90 30.09 14.62 20.00 40.00 29.79 28.57 34.94 47.73 22.05 18.18 37.70 20.22 28.87 21.05 15.87 22.80 24.56 51.61 33.33 33.78 31.29 22.17 27.71 28.51 25.00 39.69 19.20 16.06 21.88 18.50 26.27 19.30 26.67 38.24 32.91 28.57 29.85 26.32 20.55 12.82 K intron_retention fax chr3L - chr3L_16398946_16400120 chr3L_16398945_16398946;chr3L_16400120_16400121 chr3L_16398937_16398945;chr3L_16400121_16400459 0.00 1.69 0.00 1.37 0.00 0.00 3.77 0.00 0.78 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.95 1.04 0.00 0.00 1.52 1.41 0.00 0.00 0.00 4.65 1.01 0.00 3.42 1.44 0.00 0.00 0.56 2.99 3.95 0.00 0.00 0.70 4.62 0.83 0.00 8.93 2.35 1.01 0.84 0.00 2.41 2.50 1.16 0.00 0.00 5.45 K jcn_only_AD Bin1,I_chr3R_12012377_12012433 chr3R - chr3R_12012361_12012457 chr3R_12012361_12012433 chr3R_12012277_12012360;chr3R_12012458_12012533 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Max chr3L - chr3L_19257006_19257080 chr3L_19257005_19257006;chr3L_19257080_19257081 chr3L_19256940_19257005;chr3L_19257081_19257196 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9705,I_chr3L_16774043_16774562 chr3L + chr3L_16774043_16774562 chr3L_16774042_16774043;chr3L_16774562_16774563 chr3L_16773943_16774042;chr3L_16774563_16774662 41.43 NA NA 56.25 NA NA 66.67 42.86 36.84 NA NA 21.43 NA NA NA NA NA NA NA 50.00 NA NA 38.46 NA NA NA 46.67 26.67 NA NA 14.29 NA NA 70.00 NA NA NA NA NA NA NA 46.67 NA NA NA NA NA NA 40.00 NA NA NA NA NA 38.46 NA NA NA N cassette Dscam,F_chr2R_3219886_3225754,I_chr2R_3219886_3226532,FI_chr2R_3219886_3227659,F_chr2R_3219886_3228449,F_chr2R_3219886_3228832,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3219886_3235353 chr2R_3219886_3225376;chr2R_3225665_3235353 chr2R_3225377_3225664 chr2R_3219786_3219885;chr2R_3235354_3235453 100.00 36.36 41.67 34.38 100.00 100.00 57.89 45.83 100.00 NA 100.00 100.00 37.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 6.25 100.00 100.00 100.00 100.00 100.00 100.00 25.00 100.00 100.00 NA 20.00 100.00 100.00 100.00 100.00 NA 100.00 29.41 NA 100.00 100.00 NA NA NA NA 100.00 61.90 NA 33.33 NA NA NA 52.94 22.22 NA NA N alternative_acceptor Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629579_2629913;chr3L_2629613_2629913;chr3L_2629585_2629913;chr3L_2629527_2629913;chr3L_2629597_2629913 chr3L_2629684_2629913 chr3L_2629914_2629921;chr3L_2629427_2629526 0.93 1.50 1.03 3.05 1.16 0.75 2.03 1.38 2.48 0.00 0.00 1.60 1.95 1.51 1.15 1.63 2.34 1.12 1.09 0.92 0.00 0.00 0.68 0.58 2.06 0.95 2.44 0.00 0.69 0.56 1.18 0.83 0.89 1.35 1.42 2.44 1.06 0.69 0.85 0.49 0.58 0.99 1.05 0.51 0.00 0.26 0.81 0.19 0.95 0.93 0.66 0.72 0.63 0.00 1.05 0.64 1.54 0.30 K cassette zormin,I_chr3L_2128755_2129053,RI_chr3L_2139943_2140057 chr3L - chr3L_2123680_2125238 chr3L_2123680_2124181;chr3L_2124614_2125238 chr3L_2124182_2124613 chr3L_2123651_2123679;chr3L_2125239_2126670 47.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 50.00 44.44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA 42.86 NA NA NA NA 12.50 NA NA NA NA NA NA NA NA N alternative_donor kat80,I_chrX_16162233_16162306,I_chrX_16168725_16169287 chrX - chrX_16168725_16169347;chrX_16168725_16169287 chrX_16168725_16169565 chrX_16168625_16168724;chrX_16169566_16169786 96.19 100.00 96.77 94.00 100.00 96.67 96.23 95.12 94.12 94.44 100.00 94.23 90.32 96.43 93.10 97.87 96.15 100.00 94.29 94.92 100.00 100.00 96.43 97.30 96.00 100.00 97.50 95.65 100.00 96.55 87.69 NA NA 94.83 100.00 100.00 96.55 94.44 95.00 89.47 NA 94.23 94.12 93.55 NA 100.00 95.45 92.31 90.91 93.75 96.88 100.00 100.00 92.86 100.00 95.24 100.00 NA K intron_retention CG40191,I_chr2RHet_391475_391828,I_chr2RHet_392279_392824 chr2RHet + chr2RHet_391475_391803 chr2RHet_391474_391475;chr2RHet_391803_391804 chr2RHet_391375_391474;chr2RHet_391804_391926 0.59 0.00 1.27 0.89 0.78 0.00 2.01 0.46 0.00 0.00 1.50 1.18 0.00 0.00 1.11 0.00 0.00 0.73 0.00 1.15 1.57 0.00 0.00 0.65 0.00 1.27 0.00 4.35 0.00 0.00 1.31 0.00 0.00 1.88 0.00 0.00 0.00 0.79 0.00 2.09 0.00 0.36 0.00 2.36 1.45 0.69 1.55 0.00 1.08 2.40 1.20 0.85 0.00 1.72 0.59 0.78 1.60 0.00 K alternative_acceptor CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3018025_3018163;chr2L_3018018_3018163;chr2L_3018038_3018163 chr2L_3018082_3018163 chr2L_3018164_3018185;chr2L_3017982_3018017 88.89 83.33 84.00 91.18 75.00 81.48 91.89 94.23 93.94 100.00 76.92 95.45 90.00 88.89 88.24 97.22 90.91 91.30 93.33 87.50 88.24 95.45 84.21 86.67 77.78 100.00 92.00 57.14 100.00 75.00 95.12 78.57 90.00 87.18 83.33 100.00 84.62 75.00 57.14 86.67 88.89 91.18 84.21 92.00 92.31 91.30 100.00 83.33 91.67 92.86 82.61 90.91 75.00 90.91 88.89 83.33 80.00 71.43 K intron_retention RhoGAP5A,C_chrX_5514320_5515557 chrX - chrX_5511062_5511153 chrX_5511061_5511062;chrX_5511153_5511154 chrX_5510684_5511061;chrX_5511154_5511259 100.00 94.12 100.00 100.00 NA 90.00 100.00 100.00 92.86 100.00 100.00 100.00 NA NA 100.00 90.00 NA 100.00 100.00 96.97 100.00 96.43 93.33 95.00 92.31 100.00 94.12 91.67 96.00 94.74 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 NA 90.91 97.44 96.55 86.67 100.00 100.00 100.00 94.44 100.00 100.00 94.12 90.91 93.33 94.12 96.43 K alternative_acceptor aPKC,I_chr2R_10833552_10833654,RI_chr2R_10849347_10850391 chr2R - chr2R_10833552_10833654;chr2R_10833596_10833654 chr2R_10832733_10833654 chr2R_10833655_10833754;chr2R_10832714_10832732 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 2.86 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Bin1,I_chr3R_12012377_12012433 chr3R - chr3R_12012361_12012433 chr3R_12012360_12012361;chr3R_12012433_12012434 chr3R_12012277_12012360;chr3R_12012434_12012533 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 1.40 2.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon CG3774,I_chrX_6114220_6114292 chrX + chrX_6114220_6115412 chrX_6114220_6114347,chrX_6114220_6114292 chrX_6115413_6116869 chrX_6114348_6114450 chrX_6114120_6114219 71.43 53.85 65.38 80.95 85.71 68.00 71.43 84.00 84.21 52.94 64.29 90.48 63.16 87.50 79.17 71.43 82.35 81.25 61.11 70.00 66.67 75.00 75.00 68.42 80.00 68.18 77.78 58.33 58.82 58.82 68.18 61.11 80.95 70.83 85.71 83.33 70.00 60.00 85.71 83.33 38.10 83.87 81.82 80.00 57.14 50.00 57.14 56.52 83.33 42.86 89.47 85.71 81.82 80.00 88.89 66.67 71.43 37.04 N jcn_only_AA Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629579_2629913;chr3L_2629613_2629913;chr3L_2629585_2629913;chr3L_2629684_2629913;chr3L_2629597_2629913 chr3L_2629527_2629913 chr3L_2629914_2629921;chr3L_2629427_2629526 83.78 81.32 75.47 80.04 83.78 80.16 70.21 86.47 77.85 74.60 52.30 80.05 69.34 79.19 84.97 78.46 82.02 88.43 82.00 82.29 64.77 91.67 86.93 88.53 87.30 83.45 85.71 83.02 85.92 88.11 82.96 79.89 88.04 78.98 82.35 86.16 88.61 93.51 87.50 85.64 82.33 81.54 79.80 86.04 88.14 88.59 86.93 81.10 83.61 87.50 86.86 86.52 92.24 87.42 81.57 86.73 94.08 91.63 K intron_retention CG11347,I_chr3L_4412551_4417819 chr3L + chr3L_4419664_4419739 chr3L_4419663_4419664;chr3L_4419739_4419740 chr3L_4419429_4419663;chr3L_4419740_4420073 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1440 chrX + chrX_8331328_8333141 chrX_8331327_8331328;chrX_8333141_8333142 chrX_8331282_8331327;chrX_8333142_8333791 16.28 13.95 11.36 5.68 18.92 25.00 16.46 7.14 12.80 15.38 35.29 19.78 14.29 12.31 14.00 10.26 10.42 27.27 13.11 21.35 23.68 17.50 19.15 26.47 21.05 13.64 19.05 20.00 33.33 13.16 11.67 11.11 13.73 6.86 17.14 18.92 16.28 23.08 23.33 15.38 13.79 16.96 11.76 17.39 16.28 15.22 20.00 10.81 12.22 21.88 20.83 17.86 7.14 12.50 14.81 16.67 19.44 8.51 K alternative_acceptor Sod,RI_chr3L_11105949_11106366,I_chr3L_11105949_11106370 chr3L - chr3L_11105944_11106673 chr3L_11105949_11106673 chr3L_11106674_11106838;chr3L_11105849_11105943 100.00 100.00 100.00 99.02 100.00 100.00 100.00 100.00 100.00 98.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.35 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.27 100.00 100.00 100.00 100.00 99.34 99.51 100.00 K intron_retention yellow-f2,CG17327 chr3R - chr3R_8819319_8819385 chr3R_8819318_8819319;chr3R_8819385_8819386 chr3R_8819136_8819318;chr3R_8819386_8820041 9.43 0.00 3.70 16.67 4.35 10.53 12.00 15.56 7.32 NA 0.00 10.53 NA 0.00 27.27 10.81 4.17 0.00 12.00 9.43 0.00 NA NA 9.52 30.77 5.26 39.13 35.71 NA NA 22.73 NA 5.88 5.71 18.75 NA NA NA 0.00 0.00 14.29 10.53 6.67 5.56 0.00 15.00 17.65 NA 9.26 NA 22.73 14.29 NA NA 13.33 0.00 0.00 5.26 K cassette CRMP,I_chr3R_1401648_1403314 chr3R + chr3R_1401648_1402757;chr3R_1401648_1403314 chr3R_1401648_1401896;chr3R_1402136_1403314,chr3R_1402136_1402757 chr3R_1401897_1402135 chr3R_1401548_1401647;chr3R_1403315_1403414 81.53 85.71 92.31 31.82 91.67 100.00 NA 43.75 77.78 82.61 87.50 95.24 75.00 100.00 90.00 100.00 71.43 100.00 80.00 76.00 100.00 70.00 76.92 77.78 93.33 66.67 66.67 71.43 72.73 81.25 95.24 72.22 82.61 92.86 71.43 78.95 88.57 75.00 76.92 83.33 66.67 85.19 90.00 92.31 77.14 81.82 93.75 79.17 80.95 63.16 93.33 80.00 75.00 91.67 90.00 68.18 90.00 88.46 K jcn_only_AD CG15134 chr2L + chr2L_16904713_16905298;chr2L_16904662_16905298 chr2L_16904611_16905298 chr2L_16905299_16905389;chr2L_16904460_16904610 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 1.54 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 NA 0.00 0.00 3.12 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K intron_retention CG8079,I_chr2R_11109323_11109403 chr2R + chr2R_11109329_11109548 chr2R_11109328_11109329;chr2R_11109548_11109549 chr2R_11109233_11109328;chr2R_11109549_11109930 34.78 33.33 NA 50.00 NA NA NA NA 34.78 NA NA 25.00 NA NA 60.00 NA NA NA NA 33.33 NA NA 40.74 40.00 NA 36.36 30.77 NA NA 33.33 NA NA NA 40.00 NA NA 40.00 25.00 27.78 33.33 NA NA NA NA NA NA 60.00 NA 50.00 35.71 30.77 NA NA NA 41.67 31.25 20.00 NA K intron_retention CG1516,I_chr2R_5743716_5743899,I_chr2R_5746990_5747874,RI_chr2R_5752988_5757801 chr2R - chr2R_5741236_5742015 chr2R_5741235_5741236;chr2R_5742015_5742016 chr2R_5741200_5741235;chr2R_5742016_5743525 21.88 10.34 26.09 10.34 22.22 25.00 29.41 20.00 19.15 18.52 NA 10.64 NA 22.22 32.00 31.58 20.00 40.74 25.00 17.02 11.11 26.32 16.67 21.88 NA 31.58 38.46 NA 50.00 NA 19.05 25.00 NA 26.67 20.00 10.53 13.51 12.50 15.79 31.82 NA 27.03 31.58 21.43 25.00 11.76 20.59 NA 17.24 41.67 21.62 14.29 NA 27.27 22.73 17.24 22.73 NA K jcn_only_AA sti,REI_chr3L_12506503_12506561 chr3L - chr3L_12504883_12505134 chr3L_12504904_12505134 chr3L_12505135_12506502;chr3L_12503401_12504882 100.00 100.00 100.00 98.65 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 98.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 96.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Pep,I_chr3L_17637180_17637918 chr3L - chr3L_17633154_17636462 chr3L_17633153_17633154;chr3L_17636462_17636463 chr3L_17631217_17633153;chr3L_17636463_17636826 11.77 26.67 33.33 50.00 NA NA 40.00 33.33 47.83 10.00 28.57 33.33 NA NA NA 64.29 NA NA NA 31.82 41.67 3.57 15.38 7.32 13.79 NA 9.38 15.38 0.00 8.33 13.79 0.00 5.26 46.15 11.54 4.35 10.64 23.81 10.26 8.70 0.00 34.62 NA 8.82 4.35 9.52 17.86 5.41 43.48 12.00 3.23 NA 10.00 3.33 54.55 11.11 10.34 12.50 N alternative_donor CG9339,RE_chr2L_20903555_20916904,I_chr2L_20903560_20918638,I_chr2L_20922613_20922685 chr2L - chr2L_20917121_20918798;chr2L_20917121_20918093 chr2L_20917121_20918638 chr2L_20916905_20917120;chr2L_20918799_20918888 23.08 21.43 23.53 32.35 22.22 23.08 27.27 37.14 16.67 28.57 18.18 14.81 19.05 16.67 27.78 24.44 30.77 25.00 33.33 8.11 44.44 20.00 23.81 14.29 22.22 38.46 25.00 20.00 16.67 12.50 20.83 22.22 16.67 28.12 21.43 25.00 23.08 0.00 33.33 32.00 33.33 30.77 37.50 7.14 25.00 26.67 18.18 25.00 42.86 14.29 23.08 12.50 0.00 12.50 37.50 22.22 16.67 0.00 N alternative_donor CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4987241_4987906;chr2L_4987298_4987906 chr2L_4987319_4987906 chr2L_4987907_4988048;chr2L_4987159_4987240 8.51 5.88 7.50 9.09 3.70 9.68 9.30 8.93 8.22 4.76 16.67 10.61 12.50 12.50 5.88 8.51 4.55 10.53 3.23 9.72 3.70 4.88 10.00 7.69 9.76 5.26 11.36 17.65 14.63 5.71 12.50 10.71 7.69 6.45 5.13 7.84 5.77 2.27 6.78 7.14 11.43 5.00 12.00 6.98 11.11 15.38 7.41 13.04 9.46 17.86 6.38 8.33 10.53 13.64 6.06 16.67 9.52 7.89 K alternative_donor jing,I_chr2R_2505678_2506068 chr2R + chr2R_2501376_2501609;chr2R_2501482_2501609;chr2R_2501388_2501609;chr2R_2501514_2501609 chr2R_2501545_2501609 chr2R_2501610_2503238;chr2R_2501342_2501375 28.57 NA NA NA NA NA NA NA 12.50 NA NA 33.33 NA NA 20.00 28.57 NA NA NA 33.33 NA 9.09 14.29 25.00 NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA 16.67 NA 28.57 NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA 33.33 NA K alternative_donor akirin,I_chr3L_7363173_7364806,I_chr3L_7363177_7364806,I_chr3L_7363177_7364831,I_chr3L_7363211_7364831,I_chr3L_7363731_7364806,I_chr3L_7364126_7364806,RI_chr3L_7364737_7364806 chr3L + chr3L_7363211_7364831;chr3L_7363169_7364831 chr3L_7363177_7364831 chr3L_7364832_7364906;chr3L_7363111_7363168 25.98 21.05 23.68 35.51 40.51 40.98 42.55 32.74 25.98 23.40 39.13 21.21 20.79 19.51 40.43 11.92 32.29 21.21 31.37 37.67 16.25 14.06 22.84 15.48 20.41 32.53 30.43 20.69 30.00 9.76 29.29 23.33 12.00 32.94 20.63 32.88 20.87 37.84 28.12 22.31 20.51 16.88 32.39 48.52 17.07 28.38 37.50 11.11 15.70 20.41 29.63 30.49 12.07 29.58 38.84 36.71 29.67 22.00 K alternative_acceptor CG8289 chrX - chrX_17529008_17529374 chrX_17529011_17529374 chrX_17529375_17530118;chrX_17528607_17529007 96.64 100.00 95.65 93.33 100.00 100.00 96.30 100.00 96.61 NA 100.00 94.44 100.00 94.44 95.45 97.14 95.24 100.00 96.55 96.00 100.00 92.86 95.65 96.15 95.24 96.67 95.83 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 96.55 100.00 100.00 96.00 91.67 98.11 100.00 100.00 100.00 94.12 100.00 94.12 95.24 96.00 96.00 95.00 93.33 100.00 97.06 96.00 93.75 93.33 K intron_retention gpp,I_chr3R_2271795_2272181 chr3R + chr3R_2268948_2269160 chr3R_2268947_2268948;chr3R_2269160_2269161 chr3R_2268929_2268947;chr3R_2269161_2269373 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG6762,I_chrX_17751392_17751499,I_chrX_17751392_17751520 chrX + chrX_17751392_17751505;chrX_17751392_17751535 chrX_17751392_17751524 chrX_17751292_17751391;chrX_17751536_17751560 18.75 12.50 18.75 12.50 35.71 18.75 26.92 18.75 13.33 12.50 11.11 15.38 25.00 12.50 15.38 15.00 0.00 20.00 28.57 17.86 9.09 27.78 18.18 18.75 44.44 9.09 14.29 31.25 18.75 50.00 35.29 21.43 9.09 18.75 22.22 14.29 23.08 27.27 23.53 25.93 28.57 3.57 0.00 18.18 26.67 28.00 23.08 20.00 22.22 20.00 23.08 22.22 11.76 13.33 23.08 15.38 21.05 16.67 K alternative_acceptor CG7656,I_chr3L_15580697_15581083 chr3L - chr3L_15579695_15580104 chr3L_15579701_15580104 chr3L_15580105_15580380;chr3L_15578904_15579694 17.74 15.19 13.46 23.21 16.67 22.86 23.53 19.67 15.79 12.12 13.51 18.52 15.15 16.67 26.83 21.43 12.20 9.76 16.67 17.32 12.12 20.87 17.24 18.10 20.31 13.33 21.79 17.20 21.15 13.33 12.12 18.18 15.87 14.63 20.69 20.63 21.70 20.99 18.05 22.86 26.53 19.27 16.67 17.74 16.39 21.43 20.65 21.57 15.84 17.48 12.05 15.56 14.12 14.77 22.73 19.63 22.32 18.87 K intron_retention Aats-lys chrX - chrX_9502689_9502751 chrX_9502688_9502689;chrX_9502751_9502752 chrX_9502455_9502688;chrX_9502752_9502885 57.14 60.00 69.23 63.64 NA NA 61.54 NA 60.00 NA NA 66.67 NA NA 69.23 60.00 NA NA NA 69.23 NA 55.88 43.75 37.50 68.75 NA 80.00 70.00 57.14 41.67 37.50 36.84 30.00 NA NA 33.33 57.14 NA 66.67 52.38 66.67 47.62 NA 41.67 38.46 30.00 NA 26.09 63.16 70.00 41.18 NA NA 36.36 NA NA NA 35.29 K intron_retention blw,I_chr2R_18686935_18687400,I_chr2R_18687257_18687400 chr2R + chr2R_18686775_18687400 chr2R_18686774_18686775;chr2R_18687400_18687401 chr2R_18686499_18686774;chr2R_18687401_18687500 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.39 0.00 1.00 0.00 0.00 0.43 0.55 0.00 0.00 1.72 0.00 0.00 0.82 0.46 0.00 0.00 0.35 0.00 0.56 0.55 0.00 0.61 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.18 0.31 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.17 0.34 0.21 0.00 0.00 0.17 0.00 0.00 0.38 0.00 K alternative_donor Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2362674;chr2L_2361586_2362590 chr2L_2361586_2362869 chr2L_2361486_2361585;chr2L_2362870_2362919 0.00 0.00 0.00 0.00 0.00 0.00 11.11 7.14 14.29 NA NA 7.14 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 25.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 16.67 NA 0.00 0.00 NA 0.00 0.00 0.00 16.67 NA 25.00 0.00 0.00 0.00 16.67 K alternative_acceptor tho2 chr2L - chr2L_2139674_2139727 chr2L_2139677_2139727 chr2L_2139728_2140312;chr2L_2139630_2139673 37.14 35.56 29.03 33.96 45.16 48.00 35.71 35.42 37.66 26.32 33.33 44.44 42.86 30.56 26.83 33.33 37.04 36.36 41.67 44.78 30.00 31.03 35.29 42.22 37.14 29.63 28.81 47.83 50.00 37.14 43.75 39.39 32.26 27.69 36.84 38.46 44.64 37.14 39.34 32.08 35.29 33.77 42.86 38.30 35.48 47.06 41.86 48.28 41.82 36.59 48.00 44.83 41.67 43.18 39.47 40.00 36.54 33.33 K intron_retention CaMKI,I_chr4_467862_471815,I_chr4_471136_473243,I_chr4_472116_472527,I_chr4_473338_473410,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_472081_473243 chr4_472080_472081;chr4_473243_473244 chr4_472016_472080;chr4_473244_473337 17.16 16.67 17.65 12.90 NA NA 26.92 18.00 26.32 NA NA 13.79 40.00 27.78 10.53 18.92 20.00 14.29 15.62 19.05 18.18 NA 14.29 5.88 NA 45.45 21.88 NA NA NA 12.12 NA NA 16.00 16.67 NA NA 21.43 0.00 16.67 0.00 23.08 22.73 28.57 NA 13.04 25.00 14.29 13.73 26.67 9.09 NA NA NA 14.29 17.65 27.78 15.38 K intron_retention CG10576,I_chr3L_5756877_5757511,I_chr3L_5758117_5758186 chr3L - chr3L_5755625_5755687 chr3L_5755624_5755625;chr3L_5755687_5755688 chr3L_5755074_5755624;chr3L_5755688_5755815 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.40 0.00 0.00 0.00 0.00 0.33 0.46 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.27 0.00 0.00 0.48 K jcn_only_AA nej,RI_chrX_9578185_9581011 chrX - chrX_9568928_9570544 chrX_9568958_9570544 chrX_9570545_9570702;chrX_9568847_9568927 100.00 100.00 100.00 100.00 100.00 100.00 99.02 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Cdep,I_chr3R_749200_749265 chr3R + chr3R_752054_766396 chr3R_752054_752508 chr3R_751798_752053 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 1.03 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.43 0.00 0.00 1.75 0.00 0.00 0.00 0.59 0.00 0.55 0.00 0.00 0.89 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ide,I_chr3L_20366301_20366354,I_chr3L_20368443_20368519 chr3L - chr3L_20365741_20365798 chr3L_20365740_20365741;chr3L_20365798_20365799 chr3L_20365448_20365740;chr3L_20365799_20366005 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.81 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpS27 chr3R - chr3R_21072104_21072169 chr3R_21072103_21072104;chr3R_21072169_21072170 chr3R_21072035_21072103;chr3R_21072170_21072238 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.04 0.00 0.00 0.09 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.02 0.00 0.00 0.05 0.00 0.04 0.00 0.01 0.00 K intron_retention lig,I_chr2R_3960977_3961116,I_chr2R_3960977_3961119,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3960740_3961104 chr2R_3960739_3960740;chr2R_3961104_3961105 chr2R_3960632_3960739;chr2R_3961105_3961205 12.50 13.33 14.29 NA NA NA 14.29 25.00 5.26 NA NA 15.38 NA NA NA 25.00 NA 0.00 12.50 6.82 0.00 13.89 15.38 12.50 9.09 0.00 19.51 15.38 6.06 0.00 NA NA 13.79 12.50 5.26 13.16 10.00 0.00 7.32 20.00 13.33 17.07 NA 15.38 0.00 13.33 0.00 20.00 11.54 NA 12.50 NA NA NA 12.50 5.88 0.00 14.29 K intron_retention AcCoAS,I_chr3L_21265768_21265914 chr3L - chr3L_21265254_21265347 chr3L_21265253_21265254;chr3L_21265347_21265348 chr3L_21264308_21265253;chr3L_21265348_21265537 0.00 0.00 0.00 1.77 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 1.64 0.00 0.00 0.44 0.00 0.46 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 2.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG12112,CG12111 chrX - chrX_8453877_8453953 chrX_8453892_8453953 chrX_8453954_8454022;chrX_8453812_8453876 98.15 96.08 100.00 97.83 97.78 98.28 99.00 100.00 96.83 93.55 100.00 98.90 97.50 100.00 98.39 98.80 100.00 95.83 100.00 98.18 98.18 96.88 95.65 96.88 100.00 97.96 98.33 96.97 95.00 95.12 98.55 100.00 100.00 99.01 95.00 81.58 94.55 98.08 98.21 96.72 83.33 99.12 100.00 98.18 100.00 96.55 97.22 100.00 98.15 98.46 96.67 96.15 97.83 97.96 98.55 98.04 100.00 97.22 K intron_retention drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9390264 chr2R_9389596_9389597;chr2R_9390264_9390265 chr2R_9389497_9389596;chr2R_9390265_9390289 98.15 100.00 93.94 95.38 94.44 100.00 98.15 94.20 98.63 100.00 100.00 100.00 100.00 100.00 97.50 98.04 100.00 96.43 95.65 94.92 100.00 96.77 100.00 94.44 100.00 94.44 100.00 100.00 94.12 100.00 89.74 92.31 98.08 98.53 100.00 95.83 95.00 93.33 94.44 96.77 95.65 98.53 100.00 100.00 100.00 100.00 96.77 100.00 97.37 96.30 96.88 100.00 100.00 100.00 95.56 100.00 100.00 97.06 K alternative_donor CG5953,snoRNA:Me28S-C1237 chr2L - chr2L_16528440_16532458;chr2L_16528440_16532707 chr2L_16528440_16532720 chr2L_16527390_16528439;chr2L_16532721_16532862 80.95 NA 81.82 NA NA NA 57.14 78.95 76.00 NA 86.67 100.00 NA NA 92.31 80.00 NA NA 78.57 81.48 95.65 NA 70.00 NA NA NA 77.78 62.50 NA 100.00 90.00 NA NA 80.95 89.47 NA NA NA 92.31 69.23 NA 85.19 77.78 75.00 NA 91.67 78.57 80.00 80.00 NA 72.73 NA NA 87.50 NA 100.00 NA 87.50 K intron_retention dlg1,I_chrX_11298230_11299306 chrX + chrX_11284001_11284263 chrX_11284000_11284001;chrX_11284263_11284264 chrX_11283932_11284000;chrX_11284264_11284573 98.09 96.30 96.55 97.83 95.45 96.77 100.00 100.00 96.00 100.00 94.44 98.28 100.00 96.77 100.00 98.15 100.00 96.55 100.00 98.48 95.24 100.00 100.00 100.00 95.45 88.24 97.30 100.00 94.12 100.00 100.00 92.31 97.92 100.00 94.44 97.50 100.00 95.83 100.00 100.00 100.00 95.08 95.83 96.77 NA 100.00 100.00 96.15 98.39 100.00 98.04 95.83 95.24 100.00 97.06 93.75 100.00 100.00 K jcn_only_AA SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_16982134_16983336;chr3R_16982134_16983164;chr3R_16982134_16983218;chr3R_16982134_16983159 chr3R_16982134_16982890 chr3R_16982126_16982133;chr3R_16983337_16983376 3.23 NA 6.45 0.00 NA NA 11.76 3.85 2.00 NA NA 4.55 6.06 9.09 0.00 2.70 NA 0.00 6.67 1.79 NA NA NA NA NA NA NA NA NA NA 3.23 NA NA 2.04 NA NA NA NA NA NA NA 1.89 NA NA NA NA NA NA 5.45 NA NA NA NA NA 0.00 NA NA 10.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389272_2395659 chrX_2389272_2389644;chrX_2389762_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2395659 chrX_2389645_2389761;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2389172_2389271;chrX_2395660_2395759 33.33 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG15321,I_chrX_9578185_9579504,I_chrX_9578185_9579582,I_chrX_9578185_9580671,RI_chrX_9578185_9581011 chrX - chrX_9578185_9579582;chrX_9578185_9579535 chrX_9578185_9579504 chrX_9578085_9578184;chrX_9579583_9579597 1.26 NA NA NA NA NA NA 3.33 0.00 NA NA 0.00 NA 11.54 NA 0.00 NA NA NA 8.33 NA NA 4.55 NA NA NA NA NA 5.00 4.35 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA 4.00 NA 0.00 NA NA NA 2.53 4.55 NA 0.00 NA NA NA NA NA NA 0.00 K alternative_donor Iap2,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11821325_11821703 chr2R_11821325_11821603 chr2R_11821304_11821324;chr2R_11821704_11822085 8.27 4.76 6.25 22.00 6.94 9.09 6.67 9.21 7.25 10.20 10.29 8.28 9.78 6.41 10.78 12.07 7.69 9.41 7.81 12.76 9.86 5.71 8.15 7.25 10.00 9.64 15.25 14.14 10.53 10.34 18.37 11.29 7.84 6.40 8.05 11.32 7.10 4.17 8.05 6.86 8.27 11.04 10.53 3.57 13.64 5.19 4.63 18.57 9.72 7.14 8.48 6.74 7.04 6.96 6.25 6.11 5.50 8.62 K jcn_only_AA rok,RI_chrX_16526333_16526477 chrX - chrX_16524596_16526477 chrX_16526333_16526477 chrX_16526478_16526577;chrX_16521967_16524595 1.47 1.47 0.00 0.00 0.00 1.75 3.12 0.00 0.58 1.79 1.96 1.89 0.00 0.00 0.00 6.25 0.00 0.00 0.00 1.89 3.64 1.71 2.15 1.18 0.00 1.47 0.00 7.89 9.76 0.00 0.00 0.00 2.86 0.91 9.09 4.23 1.06 3.61 2.42 4.04 0.00 1.69 0.00 3.70 6.82 0.00 4.44 4.29 0.00 4.08 1.82 1.64 2.70 0.00 0.00 0.00 2.50 0.00 K alternative_donor CG5068 chr3L + chr3L_8980059_8980126 chr3L_8980070_8980126 chr3L_8980127_8980325;chr3L_8979812_8980058 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.97 1.15 0.00 0.00 1.80 1.89 0.00 0.00 2.56 0.00 0.00 0.00 1.64 0.00 1.16 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 K intron_retention CG1354,CRE_chrX_9673280_9674277,RE_chrX_9673527_9674239 chrX + chrX_9673276_9674273 chrX_9673275_9673276;chrX_9674273_9674274 chrX_9673180_9673275;chrX_9674274_9674334 3.23 3.60 2.80 1.28 2.11 2.94 4.63 1.37 2.30 4.35 5.36 3.95 2.82 2.78 3.36 3.23 2.94 4.76 5.41 3.37 3.85 6.58 2.70 2.33 3.03 4.30 2.01 3.88 1.90 0.95 3.37 1.23 1.45 3.52 2.25 2.70 3.73 3.03 4.00 3.57 2.88 2.55 2.99 2.22 1.56 3.45 4.31 4.92 3.37 4.67 3.40 2.53 3.82 3.85 2.91 4.67 4.08 2.73 K jcn_only_AD scaf6,EI_chr3L_17037760_17037808 chr3L - chr3L_17032731_17033538;chr3L_17032731_17033237 chr3L_17032731_17034793 chr3L_17032656_17032730 20.30 7.41 15.00 11.54 NA NA 29.55 24.44 10.53 NA 3.70 23.26 NA 13.04 NA 15.91 20.83 NA 18.52 11.76 26.92 NA 23.44 14.81 16.67 33.33 31.58 NA NA NA 42.86 NA 9.52 15.38 18.18 4.00 NA 24.00 25.00 10.00 NA 28.30 14.29 20.83 NA 30.00 NA NA 32.56 20.59 20.00 NA NA NA NA 26.67 25.00 NA K jcn_only_AD RpS23,I_chr2R_10103208_10103456,RI_chr2R_10103208_10103457,I_chr2R_10103243_10103455,mir-308 chr2R - chr2R_10103208_10103457 chr2R_10103208_10103455 chr2R_10103143_10103207;chr2R_10103458_10103555 99.98 99.98 99.99 99.99 99.98 99.98 99.99 99.99 99.99 99.95 99.99 99.98 99.99 99.98 99.99 99.99 99.97 99.99 99.98 99.98 99.97 99.97 99.99 99.97 99.98 100.00 99.98 99.97 99.99 99.98 99.92 99.99 100.00 99.99 99.99 99.98 99.99 99.97 99.99 99.95 99.99 100.00 99.98 99.98 99.99 99.99 99.96 100.00 99.99 99.97 99.98 100.00 99.96 99.98 99.99 99.99 99.98 99.98 K alternative_acceptor PPP4R2r chrX + chrX_10373751_10373868 chrX_10373751_10373821 chrX_10373523_10373750;chrX_10373869_10374057 1.59 5.26 1.92 0.00 0.00 0.00 2.08 0.00 1.19 5.56 0.00 1.41 6.67 0.00 5.77 3.33 0.00 2.86 0.00 1.39 0.00 0.00 2.22 4.55 0.00 0.00 2.86 0.00 8.00 0.00 4.92 0.00 4.55 2.78 0.00 3.85 0.00 3.45 2.27 1.61 0.00 2.47 0.00 0.00 0.00 2.94 0.00 7.69 3.57 3.03 1.59 3.33 0.00 0.00 5.26 0.00 3.85 6.67 K intron_retention Upf1,I_chrX_11799010_11799076 chrX - chrX_11799010_11799067 chrX_11799009_11799010;chrX_11799067_11799068 chrX_11798910_11799009;chrX_11799068_11799388 41.67 39.29 35.90 56.86 45.45 37.93 43.24 39.39 30.51 46.67 38.46 35.19 30.43 25.71 43.75 32.26 33.33 36.00 52.38 59.32 34.78 36.84 61.70 42.31 73.91 53.33 55.26 51.72 54.84 50.00 NA NA 48.94 34.00 50.00 66.67 50.00 39.29 42.86 48.57 69.23 40.43 41.67 34.62 46.15 39.13 18.18 33.33 42.11 50.00 50.00 36.84 21.74 38.46 35.48 38.46 50.00 26.67 K intron_retention Inos,I_chr2R_3344353_3345211 chr2R - chr2R_3342737_3342806 chr2R_3342736_3342737;chr2R_3342806_3342807 chr2R_3342419_3342736;chr2R_3342807_3343274 0.64 0.34 0.51 0.26 0.44 0.79 0.33 0.84 0.50 0.48 0.20 0.53 0.00 0.88 0.67 1.33 0.28 0.57 0.99 0.40 0.38 0.51 0.47 0.53 0.61 0.93 0.73 0.84 0.64 1.03 1.24 0.78 0.48 0.85 0.88 0.93 0.49 0.33 0.28 0.73 0.65 0.50 0.72 0.44 0.39 0.88 0.49 1.00 0.89 0.54 0.77 0.89 0.85 0.70 0.97 0.50 0.65 1.10 K intron_retention CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2462985_2463056 chr3L_2462984_2462985;chr3L_2463056_2463057 chr3L_2462797_2462984;chr3L_2463057_2464583 0.00 0.00 0.00 6.90 0.00 0.00 0.00 0.00 0.00 0.00 10.00 1.12 0.00 0.00 2.33 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.67 0.00 0.00 0.00 0.00 6.45 0.00 0.00 0.00 0.00 0.00 2.38 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpS7,E_chr3R_26032339_26034298 chr3R - chr3R_26034380_26034635 chr3R_26034379_26034380;chr3R_26034635_26034636 chr3R_26034299_26034379;chr3R_26034636_26034731 90.91 NA NA 81.82 NA NA 100.00 NA NA NA NA 87.50 NA NA 60.00 NA NA NA 66.67 92.86 NA 96.97 100.00 NA NA NA NA NA 90.91 87.50 100.00 NA 90.00 NA NA 90.91 NA NA 100.00 69.23 91.67 80.00 NA NA 83.33 100.00 100.00 91.67 82.35 100.00 100.00 NA 87.50 NA NA NA 88.89 91.67 K jcn_only_AD cbs,I_chr2R_9340506_9340593,I_chr2R_9340512_9340593 chr2R + chr2R_9340512_9340593;chr2R_9340506_9340593 chr2R_9340536_9340593 chr2R_9340594_9340693;chr2R_9340412_9340505 92.00 98.15 86.00 94.19 91.43 97.14 92.00 92.50 90.77 91.67 88.57 93.02 85.37 91.07 86.21 93.18 88.10 83.72 93.94 91.59 97.06 NA 94.44 94.44 91.53 91.89 93.55 96.77 90.70 90.74 88.04 95.12 96.08 93.10 82.00 94.64 94.34 87.76 91.04 94.29 84.21 91.59 92.31 83.87 90.57 93.10 92.59 95.24 96.30 92.55 92.13 87.76 NA 90.48 92.31 86.52 87.50 95.83 K alternative_donor Cyp1,RI_chrX_16212641_16213159,RI_chrX_16212641_16213308,I_chrX_16212641_16213680,I_chrX_16212641_16213960 chrX - chrX_16212641_16213960;chrX_16212641_16214111 chrX_16212641_16213308 chrX_16212541_16212640;chrX_16214112_16214235 0.21 0.14 0.35 0.42 0.29 0.27 0.39 0.25 0.30 0.13 0.31 0.26 0.41 0.50 0.33 0.58 0.48 0.30 0.50 0.36 0.14 0.14 0.16 0.13 0.21 0.26 0.35 1.53 0.20 0.14 0.43 0.10 0.15 0.38 0.16 0.21 0.21 0.17 0.16 0.21 0.10 0.21 0.14 0.20 0.13 0.13 0.18 0.07 0.26 0.13 0.18 0.09 0.13 0.17 0.36 0.16 0.11 0.10 K alternative_acceptor Incenp,I_chr2R_3167836_3167975 chr2R + chr2R_3167832_3167978 chr2R_3167832_3167975 chr2R_3167736_3167831;chr2R_3167979_3168075 82.61 83.72 70.69 82.61 77.27 84.78 85.45 79.57 82.52 76.47 75.68 84.71 81.25 82.61 82.35 83.93 82.93 79.31 80.43 84.54 81.40 88.89 83.33 86.49 90.91 88.14 82.61 86.21 82.22 84.78 84.21 85.25 83.10 87.32 81.82 87.18 78.26 85.71 81.93 83.15 75.51 86.32 91.30 72.73 76.12 80.33 92.31 80.28 87.10 82.35 86.11 72.73 78.38 83.72 78.46 81.97 76.92 83.33 K jcn_only_AA Mbs,I_chr3L_16045251_16046108,I_chr3L_16057100_16057329 chr3L + chr3L_16057100_16057329 chr3L_16057100_16057326 chr3L_16057000_16057099;chr3L_16057330_16057417 98.84 98.96 100.00 97.64 97.14 98.90 99.15 99.31 97.37 97.73 97.87 98.40 99.00 100.00 100.00 98.73 100.00 98.75 98.78 98.97 100.00 99.49 99.35 99.25 97.73 98.84 100.00 100.00 97.85 98.36 95.65 96.88 98.51 96.89 100.00 97.12 97.04 98.84 100.00 100.00 97.73 98.08 98.77 98.21 99.07 98.89 100.00 100.00 99.00 97.50 98.44 98.73 100.00 98.31 100.00 100.00 98.18 99.21 K intron_retention Hsc70Cb chr3L + chr3L_14035460_14035547 chr3L_14035459_14035460;chr3L_14035547_14035548 chr3L_14035259_14035459;chr3L_14035548_14036712 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.21 0.00 0.00 0.12 0.00 0.00 0.00 0.16 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Spt-I,I_chr2R_9057761_9058039 chr2R + chr2R_9056076_9056319 chr2R_9056106_9056319 chr2R_9056320_9056393;chr2R_9056013_9056075 1.58 0.00 0.00 2.70 2.33 1.75 2.13 2.94 2.12 7.14 1.61 0.92 1.56 2.35 2.67 0.88 1.52 1.47 2.13 1.43 1.25 2.86 2.90 1.02 0.00 1.75 1.43 3.85 11.76 0.00 5.95 2.94 3.57 2.63 0.00 NA 0.96 0.00 0.00 4.31 NA 4.57 3.39 0.00 5.26 3.23 0.00 0.00 1.27 1.33 1.49 1.27 0.00 NA 3.30 0.00 0.00 3.03 K jcn_only_AD CG16979 chr3L + chr3L_15569716_15569861 chr3L_15569803_15569861 chr3L_15569862_15571775;chr3L_15569652_15569715 100.00 100.00 100.00 97.37 NA 88.89 100.00 100.00 100.00 NA NA 97.87 NA NA 100.00 96.43 100.00 NA 93.94 97.50 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 92.86 NA 95.45 97.50 100.00 100.00 100.00 NA 100.00 100.00 NA 96.77 95.83 100.00 NA 100.00 100.00 NA 97.73 100.00 100.00 NA 95.65 NA 100.00 100.00 100.00 100.00 K intron_retention Fak56D,F_chr2R_15323055_15323097 chr2R - chr2R_15324149_15324362 chr2R_15324148_15324149;chr2R_15324362_15324363 chr2R_15324053_15324148;chr2R_15324363_15324680 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 95.83 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention Aldh-III,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3357578_3357898 chr2R_3357577_3357578;chr2R_3357898_3357899 chr2R_3357478_3357577;chr2R_3357899_3358120 1.98 0.00 0.00 2.94 1.41 2.47 5.80 2.16 2.40 2.50 0.00 4.12 4.11 2.44 5.77 4.44 1.27 7.32 3.75 1.66 0.00 28.57 1.57 2.04 0.00 1.41 5.10 6.90 2.70 0.00 6.31 0.00 0.00 3.20 0.00 1.49 1.82 0.00 3.33 3.92 0.00 4.02 0.00 0.00 4.76 0.00 0.95 3.61 2.86 4.29 1.83 2.78 0.00 0.00 1.87 1.98 0.00 1.56 K alternative_acceptor gp210,I_chr2R_1653709_1654789,I_chr2R_1655359_1655422 chr2R + chr2R_1655566_1656853 chr2R_1655566_1656847 chr2R_1655423_1655565;chr2R_1656854_1657000 100.00 100.00 97.87 98.11 100.00 95.83 100.00 98.84 98.51 100.00 100.00 100.00 97.14 97.44 97.50 98.73 96.97 100.00 100.00 100.00 100.00 96.00 100.00 96.43 100.00 100.00 100.00 92.31 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 97.44 100.00 96.88 100.00 95.83 100.00 98.81 100.00 100.00 96.00 100.00 100.00 98.25 100.00 97.37 99.04 K alternative_acceptor Gmap,I_chrX_15393496_15401194,I_chrX_15400854_15401194,I_chrX_15402291_15403750 chrX + chrX_15393496_15397618 chrX_15393496_15397615 chrX_15393449_15393495;chrX_15397619_15400494 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA 100.00 NA NA NA NA NA NA NA K jcn_only_AD RpL21,I_chr2L_22247722_22247782 chr2L - chr2L_22247722_22247795 chr2L_22247722_22247782 chr2L_22247622_22247721;chr2L_22247796_22247854 0.18 2.68 2.91 0.19 0.00 0.46 1.90 0.15 0.94 0.51 0.75 1.40 1.60 1.83 2.25 2.31 0.00 0.71 0.41 0.65 0.86 0.12 0.00 0.00 0.00 0.46 2.04 0.00 0.33 0.00 0.18 0.21 0.00 0.16 0.00 0.00 0.00 1.19 0.00 0.03 0.00 0.10 0.00 0.00 0.10 0.00 0.00 0.00 0.37 0.00 1.98 0.00 0.00 1.19 0.87 0.00 1.37 0.25 K intron_retention iPLA2-VIA chr3L - chr3L_9855136_9855190 chr3L_9855135_9855136;chr3L_9855190_9855191 chr3L_9854495_9855135;chr3L_9855191_9856008 0.00 0.00 0.00 1.61 0.00 2.70 0.67 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 3.81 3.70 0.00 2.70 1.08 0.00 1.16 1.90 0.00 0.00 0.00 2.88 0.00 0.00 3.37 3.33 0.00 0.00 1.79 0.00 0.00 0.97 0.00 0.00 0.00 2.67 1.88 0.00 0.00 0.00 2.41 0.00 2.15 3.03 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 K alternative_last_exon Pi3K68D,F_chr3L_11781319_11782640 chr3L - chr3L_11778216_11780157 chr3L_11779740_11780157 chr3L_11777502_11778215 chr3L_11779077_11779739 chr3L_11780158_11780210 9.52 8.33 5.26 12.28 3.12 5.88 10.91 15.25 9.47 4.17 18.52 5.80 16.67 11.43 7.69 16.33 12.12 6.06 14.29 9.88 11.54 7.69 6.76 10.20 8.57 6.45 7.14 6.67 11.76 6.38 9.09 5.88 4.65 12.90 8.33 6.67 4.41 8.57 3.57 7.14 11.11 6.25 12.90 10.64 16.67 18.75 16.00 6.25 12.00 21.43 11.86 12.50 9.52 21.05 6.25 27.78 26.32 17.39 K alternative_donor Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2364480;chr2L_2361586_2364836;chr2L_2361586_2365060;chr2L_2361586_2364302;chr2L_2361586_2364594;chr2L_2361586_2364312;chr2L_2361586_2364889 chr2L_2361586_2364640 chr2L_2361486_2361585;chr2L_2365061_2365065 20.51 25.93 20.51 22.54 17.14 18.18 15.87 16.25 16.07 22.22 13.89 18.31 23.53 21.05 21.95 19.35 19.44 15.62 17.02 20.00 13.51 40.00 20.51 21.88 15.38 17.50 17.39 37.50 41.67 42.86 15.56 48.00 61.22 18.42 23.08 33.33 15.38 14.29 18.42 42.86 50.00 19.75 14.29 40.74 38.89 39.13 41.67 47.06 16.05 16.00 18.52 20.69 33.33 25.00 18.18 25.93 25.64 59.26 K cassette f-cup,RI_chr3R_9522069_9522165,I_chr3R_9524004_9524059,EI_chr3R_9524613_9524789 chr3R - chr3R_9522069_9522548 chr3R_9522069_9522158;chr3R_9522491_9522548 chr3R_9522159_9522490 chr3R_9521969_9522068;chr3R_9522549_9522949 0.00 0.00 0.00 5.26 NA 0.00 0.00 0.00 2.44 NA 0.00 0.00 0.00 0.00 0.00 5.56 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 6.67 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Doa,I_chr3R_24715823_24718923,I_chr3R_24738109_24738303,I_chr3R_24747391_24747896 chr3R + chr3R_24733060_24745213 chr3R_24733059_24733060;chr3R_24745213_24745214 chr3R_24732991_24733059;chr3R_24745214_24745289 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 NA NA NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA NA NA 100.00 92.86 NA 100.00 NA NA NA 100.00 NA NA NA K jcn_only_AD scaf6,EI_chr3L_17037760_17037808 chr3L - chr3L_17032731_17034793;chr3L_17032731_17033538 chr3L_17032731_17033237 chr3L_17032656_17032730 52.72 66.67 50.00 67.31 NA NA 61.36 64.44 68.42 NA 70.37 58.14 NA 47.83 NA 63.64 45.83 NA 62.96 58.82 38.46 NA 43.75 40.74 50.00 51.85 44.74 NA NA NA 7.14 NA 52.38 56.41 72.73 60.00 NA 48.00 57.14 56.67 NA 58.49 80.95 50.00 NA 35.00 NA NA 34.88 52.94 52.50 NA NA NA NA 50.00 40.00 NA K intron_retention I_chr2R_2754447_2755071,Spn4,CG9454 chr2R - chr2R_2763937_2764031 chr2R_2763936_2763937;chr2R_2764031_2764032 chr2R_2763778_2763936;chr2R_2764032_2764238 94.12 91.43 88.24 93.94 89.47 100.00 92.11 90.48 91.53 95.00 94.74 97.14 94.12 82.61 90.48 100.00 92.31 82.35 89.66 97.44 100.00 78.95 97.30 95.00 89.47 93.75 97.37 95.65 100.00 95.24 97.14 95.65 83.33 90.91 100.00 96.55 88.00 94.74 96.55 91.30 96.00 97.78 90.00 86.54 90.00 92.59 90.32 95.00 91.30 96.08 91.30 88.00 95.45 86.21 96.67 97.14 97.87 96.00 K alternative_donor tsr,I_chr2R_19932706_19933121 chr2R - chr2R_19932706_19934188 chr2R_19932706_19933121 chr2R_19932606_19932705;chr2R_19934189_19934352 0.19 0.12 0.24 0.33 0.23 0.22 0.28 0.30 0.27 0.11 0.19 0.20 0.18 0.27 0.16 0.21 0.19 0.22 0.22 0.22 0.13 0.13 0.17 0.21 0.15 0.21 0.47 0.42 0.24 0.17 0.22 0.11 0.10 0.21 0.16 0.14 0.17 0.11 0.15 0.23 0.08 0.29 0.21 0.16 0.15 0.11 0.11 0.16 0.31 0.21 0.21 0.26 0.07 0.09 0.24 0.09 0.04 0.10 K intron_retention itp chr2R + chr2R_20443095_20443806 chr2R_20443094_20443095;chr2R_20443806_20443807 chr2R_20442877_20443094;chr2R_20443807_20443991 0.00 0.00 0.00 3.03 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.97 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Adam,I_chr2R_5856741_5856974,I_chr2R_5856741_5857245,I_chr2R_5857058_5857250,I_chr2R_5857078_5857245 chr2R + chr2R_5856741_5856974 chr2R_5856740_5856741;chr2R_5856974_5856975 chr2R_5856641_5856740;chr2R_5856975_5857057 91.92 100.00 93.75 92.59 88.89 84.21 88.24 94.74 89.74 95.83 92.31 94.12 NA 85.71 95.00 78.95 90.00 87.50 93.33 85.11 100.00 96.30 93.48 91.67 87.50 100.00 92.86 96.43 96.67 90.48 96.43 94.74 87.50 85.19 92.11 100.00 93.02 92.00 91.84 85.71 95.83 88.37 100.00 88.00 90.00 86.05 96.88 87.50 95.83 89.74 95.35 80.00 88.89 91.67 76.92 90.32 82.46 92.00 K intron_retention CG8331,RI_chr2R_10058673_10059794,I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10058957_10059794 chr2R_10058956_10058957;chr2R_10059794_10059795 chr2R_10058898_10058956;chr2R_10059795_10059894 0.00 NA NA NA NA NA NA NA 5.56 NA NA NA NA NA NA NA NA NA NA NA NA 26.09 0.00 NA NA NA 14.29 NA NA NA 12.50 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA 5.88 NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA K intron_retention Rad23,I_chr4_328801_328879,RI_chr4_328916_330164 chr4 + chr4_328916_329038 chr4_328915_328916;chr4_329038_329039 chr4_328880_328915;chr4_329039_329705 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention th,I_chr3L_16033166_16034018,I_chr3L_16033166_16035885,I_chr3L_16036172_16039584,I_chr3L_16036172_16043557,RI_chr3L_16038514_16039584,RI_chr3L_16038543_16039584,RI_chr3L_16039065_16039584 chr3L - chr3L_16033166_16039584 chr3L_16033165_16033166;chr3L_16039584_16039585 chr3L_16033066_16033165;chr3L_16039585_16039684 1.03 0.43 1.81 1.16 1.23 0.00 0.80 1.42 0.80 1.30 0.00 1.28 0.68 1.37 1.06 2.01 0.72 0.00 1.03 2.29 0.00 1.96 1.69 0.48 0.00 1.14 1.95 6.02 12.24 1.64 1.02 0.00 2.01 1.38 0.49 1.22 0.00 0.00 0.00 0.54 1.85 1.54 0.91 2.33 1.28 0.82 0.52 5.71 0.97 0.00 0.74 0.56 0.00 0.00 1.64 1.04 0.91 2.05 K alternative_donor alpha-Adaptin,I_chr2L_413655_413722 chr2L - chr2L_413655_414442 chr2L_413655_413722 chr2L_413555_413654;chr2L_414443_414852 15.38 16.13 11.90 9.23 7.41 18.52 12.07 17.74 15.29 25.00 2.86 13.46 29.03 18.52 14.63 25.53 8.33 21.74 17.07 17.74 9.68 55.00 16.22 14.71 16.67 12.20 16.13 12.50 12.00 19.05 16.67 14.29 14.58 18.18 16.00 11.11 11.76 11.54 15.38 20.45 8.33 13.25 16.67 12.00 6.67 13.16 36.36 21.05 16.39 18.18 18.42 12.50 12.50 12.50 13.04 20.00 16.67 17.14 K intron_retention CG6621 chr3R - chr3R_6717703_6717806 chr3R_6717702_6717703;chr3R_6717806_6717807 chr3R_6717236_6717702;chr3R_6717807_6718025 20.00 20.00 29.41 28.57 NA 17.65 10.00 27.78 22.73 NA 17.65 28.57 NA NA 26.32 27.78 NA NA NA 16.22 NA 28.57 21.43 25.00 11.11 26.67 36.36 33.33 11.76 10.00 27.78 22.22 18.18 20.00 0.00 8.70 19.05 NA 35.00 8.33 18.52 13.79 33.33 NA 12.50 17.65 19.05 22.86 16.67 NA 10.53 NA 17.65 NA 24.00 NA 30.00 19.35 N jcn_only_AD CG14647 chr3R + chr3R_226861_227075 chr3R_227015_227075 chr3R_227076_227207;chr3R_226212_226860 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CaMKI,I_chr4_467862_471815,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_467862_471815 chr4_471136_471815 chr4_471816_471915 100.00 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 NA 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 96.43 100.00 100.00 96.43 NA 95.00 NA 94.59 NA 100.00 100.00 NA NA 100.00 NA 100.00 94.29 100.00 100.00 100.00 NA NA 100.00 100.00 NA 98.53 100.00 100.00 100.00 NA NA 97.87 100.00 NA 100.00 K alternative_acceptor Pdp1,RI_chr3L_7809841_7810536,I_chr3L_7831960_7846282 chr3L - chr3L_7819806_7820775 chr3L_7820388_7820775 chr3L_7820776_7820807;chr3L_7819604_7819805 91.66 NA NA NA NA NA 100.00 100.00 75.00 NA NA NA 75.00 NA NA 83.33 100.00 NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA K cassette e(r) chrX - chrX_8799418_8800141 chrX_8799418_8799537;chrX_8799622_8800141 chrX_8799538_8799621 chrX_8798761_8799417;chrX_8800142_8800333 95.92 94.38 96.26 93.87 96.43 95.24 89.55 96.72 97.24 100.00 94.44 93.94 99.00 95.92 95.80 95.77 95.65 96.97 96.46 96.30 95.83 93.40 95.36 97.93 91.36 84.21 96.61 96.46 82.67 95.24 95.27 96.05 95.73 98.76 96.40 74.81 98.70 98.41 96.69 97.35 90.20 97.46 96.51 92.00 89.53 98.66 96.27 98.39 95.57 96.99 97.01 95.92 87.77 93.62 94.62 95.10 93.49 96.15 K intron_retention CG1416 chr2L + chr2L_21759079_21759230 chr2L_21759078_21759079;chr2L_21759230_21759231 chr2L_21758442_21759078;chr2L_21759231_21759366 3.07 2.53 4.85 4.60 1.72 2.92 4.02 3.93 4.48 0.00 3.64 3.61 4.20 3.08 3.07 3.72 4.00 5.80 2.45 3.81 1.68 8.40 1.93 1.23 2.54 4.48 3.12 2.27 2.08 2.82 3.25 2.50 2.34 2.72 4.58 4.69 2.99 1.23 1.59 3.52 4.72 2.70 5.41 2.19 4.35 2.66 2.42 7.06 5.04 4.03 2.89 1.15 1.24 1.97 3.16 2.51 1.17 3.47 K alternative_donor CG3714,I_chr2L_4190825_4191774,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4195905_4196474 chr2L_4195905_4196470 chr2L_4195805_4195904;chr2L_4196475_4196570 0.00 0.00 0.00 0.92 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 1.02 0.00 1.80 0.00 0.00 0.88 0.00 0.00 1.11 1.32 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 K jcn_only_AA CG31211 chr3R + chr3R_7777961_7778368;chr3R_7777961_7778390 chr3R_7777961_7778362 chr3R_7777954_7777960;chr3R_7778391_7778487 100.00 100.00 100.00 97.14 NA 96.77 100.00 96.55 97.87 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 92.00 100.00 100.00 NA 100.00 100.00 97.87 NA NA 97.22 95.65 96.55 100.00 100.00 100.00 97.22 100.00 100.00 NA 97.87 100.00 100.00 97.73 NA 97.78 100.00 100.00 100.00 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 NA 96.55 95.65 96.43 95.24 K intron_retention CG10107,CG10103 chr3L - chr3L_6739588_6739661 chr3L_6739587_6739588;chr3L_6739661_6739662 chr3L_6738131_6739587;chr3L_6739662_6739878 0.00 0.00 0.00 0.00 0.00 0.00 1.30 1.36 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 3.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31431 chr3R + chr3R_17696730_17697680 chr3R_17696729_17696730;chr3R_17697680_17697681 chr3R_17696406_17696729;chr3R_17697681_17697862 76.47 88.89 NA 81.25 60.00 NA 91.67 76.47 70.00 NA NA 89.47 NA NA 69.23 53.33 60.00 80.00 NA 60.71 NA NA 80.00 54.55 100.00 91.67 78.57 NA NA NA 57.14 NA 60.00 73.33 NA NA NA NA NA 78.57 NA 66.67 77.78 90.91 NA 60.00 NA 80.00 70.00 NA 72.73 NA NA NA 85.71 NA NA NA K intron_retention msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585739_2586265 chr3L_2585738_2585739;chr3L_2586265_2586266 chr3L_2585639_2585738;chr3L_2586266_2586365 93.94 NA NA 100.00 NA NA 94.74 90.91 94.12 NA 87.50 87.50 100.00 100.00 100.00 94.12 NA 88.89 90.91 94.12 NA 100.00 92.31 100.00 90.91 100.00 NA NA 91.30 88.89 100.00 NA 90.91 100.00 NA NA NA NA NA 91.67 100.00 93.75 NA 88.89 NA NA NA 92.86 92.86 NA 93.75 100.00 NA NA 100.00 NA NA NA K intron_retention Crc,Scm chr3R - chr3R_5456276_5456399 chr3R_5456275_5456276;chr3R_5456399_5456400 chr3R_5456171_5456275;chr3R_5456400_5456449 0.18 0.37 0.16 0.19 0.00 0.18 0.16 0.23 0.39 0.39 0.00 0.09 0.00 0.17 0.16 0.20 0.63 0.19 0.07 0.21 0.00 0.11 0.25 0.18 0.12 0.00 0.36 0.39 0.41 0.15 0.11 0.37 0.22 0.25 0.00 0.00 0.36 0.16 0.16 0.23 0.13 0.21 0.23 0.40 0.36 0.28 0.14 0.00 0.12 0.17 0.15 0.29 0.15 0.27 0.00 0.40 0.00 0.20 K intron_retention crl chrX + chrX_16488077_16488138 chrX_16488076_16488077;chrX_16488138_16488139 chrX_16487734_16488076;chrX_16488139_16488220 2.27 2.60 0.00 8.82 0.00 0.00 4.92 2.67 0.00 1.67 0.00 0.00 0.00 0.00 1.23 1.56 0.00 0.00 0.00 4.20 2.70 5.26 2.13 2.27 5.17 5.17 8.57 0.00 15.19 0.00 8.06 2.30 2.59 1.41 3.12 8.82 0.00 0.00 4.30 2.54 9.00 2.78 3.92 2.67 0.00 3.60 1.25 5.45 4.21 1.15 2.20 3.92 2.41 1.28 2.99 2.25 0.00 2.21 K intron_retention ry chr3R + chr3R_8858312_8858414 chr3R_8858311_8858312;chr3R_8858414_8858415 chr3R_8858286_8858311;chr3R_8858415_8858529 93.03 NA NA 90.00 NA NA NA 90.00 100.00 NA NA 90.91 NA NA NA NA NA NA 87.50 87.50 NA NA NA NA NA NA NA NA 88.89 NA 100.00 NA 92.31 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA 100.00 93.75 NA NA NA NA NA 100.00 NA NA 90.91 K alternative_donor CG6006 chr3R + chr3R_11984096_11984579;chr3R_11983962_11984579;chr3R_11984029_11984579;chr3R_11984018_11984579 chr3R_11984036_11984579 chr3R_11984580_11984637;chr3R_11983945_11983961 25.00 25.00 31.25 20.00 NA 30.00 8.33 38.46 19.05 NA 66.67 17.39 25.00 8.33 26.67 23.08 22.22 15.38 18.18 18.18 0.00 28.57 42.86 12.50 44.44 33.33 41.18 40.00 50.00 14.29 33.33 16.67 12.50 26.32 12.50 37.50 57.14 27.27 6.67 26.32 33.33 26.09 33.33 40.00 NA 25.00 11.11 30.00 20.69 33.33 22.22 25.00 7.14 20.00 30.77 12.50 14.29 25.00 K jcn_only_AD l(2)05714,RI_chr2L_4970785_4971075,CRE_chr2L_4970785_4971082,I_chr2L_4970785_4973718,RI_chr2L_4971343_4973718,CG8892 chr2L - chr2L_4970785_4971086;chr2L_4970785_4971053 chr2L_4970785_4973718 chr2L_4970685_4970784;chr2L_4973719_4973787 0.00 0.00 0.00 4.26 3.70 4.76 0.00 2.04 0.00 NA 3.85 0.00 3.57 0.00 0.00 0.00 NA 2.63 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.23 0.00 0.00 0.00 2.56 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 K alternative_acceptor CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_243585_244182;chr4_243673_244182;chr4_243657_244182 chr4_243639_244182 chr4_244183_244282;chr4_243557_243584 99.42 100.00 96.77 100.00 95.65 100.00 100.00 96.00 98.84 NA 100.00 93.42 97.37 100.00 100.00 97.65 93.55 92.31 95.74 97.47 94.44 84.21 100.00 100.00 90.00 100.00 95.83 100.00 100.00 100.00 95.08 86.67 100.00 97.18 100.00 87.50 100.00 100.00 86.67 100.00 100.00 100.00 97.50 95.00 83.33 93.33 100.00 90.00 96.84 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 93.33 K intron_retention bys chrX + chrX_7796336_7796399 chrX_7796335_7796336;chrX_7796399_7796400 chrX_7796218_7796335;chrX_7796400_7797192 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.74 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Ptp99A,I_chr3R_25302126_25302175 chr3R + chr3R_25302126_25307191 chr3R_25305548_25307191 chr3R_25307192_25307198;chr3R_25302026_25302125 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 92.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA K intron_retention drpr,I_chr3L_1720385_1723579 chr3L - chr3L_1723706_1723769 chr3L_1723705_1723706;chr3L_1723769_1723770 chr3L_1723580_1723705;chr3L_1723770_1723933 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Kap3 chrX - chrX_11228955_11229028 chrX_11228967_11229028 chrX_11229029_11229285;chrX_11228715_11228954 98.81 100.00 97.22 100.00 96.43 100.00 96.23 96.49 95.58 100.00 100.00 100.00 96.55 100.00 97.22 100.00 100.00 97.22 100.00 98.06 96.15 98.81 98.98 98.72 96.88 96.97 98.48 98.68 100.00 98.57 100.00 100.00 100.00 98.08 100.00 100.00 98.65 100.00 98.91 100.00 93.10 100.00 97.30 98.44 100.00 100.00 96.36 97.06 98.51 100.00 98.63 100.00 95.65 98.25 100.00 98.28 100.00 100.00 K intron_retention Pld,RI_chr2R_2138358_2141112 chr2R + chr2R_2140122_2140184 chr2R_2140121_2140122;chr2R_2140184_2140185 chr2R_2139443_2140121;chr2R_2140185_2140192 95.65 100.00 94.74 100.00 100.00 92.31 95.65 95.45 96.77 100.00 91.67 96.30 100.00 94.44 94.44 96.00 92.31 94.44 94.44 100.00 100.00 95.45 100.00 100.00 94.12 100.00 100.00 93.75 100.00 88.24 100.00 100.00 96.43 96.43 100.00 93.33 95.65 95.45 96.30 97.06 95.65 100.00 85.71 90.48 88.24 100.00 93.33 100.00 94.74 93.75 96.15 93.33 93.75 93.33 89.47 94.44 94.12 100.00 K cassette CG40263,F_chr2RHet_1265687_1293040,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1293175_1324445 chr2RHet_1293175_1293235;chr2RHet_1293394_1324445 chr2RHet_1293236_1293393 chr2RHet_1293056_1293174;chr2RHet_1324446_1324530 98.03 96.97 97.56 100.00 100.00 97.22 95.45 98.28 98.82 100.00 NA 98.36 100.00 95.56 97.62 98.41 97.96 93.10 98.11 97.70 100.00 90.91 96.55 100.00 100.00 97.22 100.00 100.00 93.33 100.00 96.72 100.00 94.12 100.00 100.00 100.00 100.00 100.00 96.15 96.77 100.00 97.44 97.14 100.00 90.00 100.00 96.43 100.00 98.68 90.00 97.62 92.59 92.86 93.75 98.28 95.65 93.75 100.00 K intron_retention CG10874 chr2L - chr2L_2192091_2192146 chr2L_2192090_2192091;chr2L_2192146_2192147 chr2L_2191850_2192090;chr2L_2192147_2192380 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 4.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG3714,I_chr2L_4190825_4191774,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,I_chr2L_4196780_4197306,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4196780_4197951 chr2L_4196815_4197951 chr2L_4197952_4197963;chr2L_4196715_4196779 68.69 NA NA NA NA NA 81.82 NA NA NA NA NA NA NA NA 55.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor None chrU - chrU_7543573_7543678 chrU_7543573_7543639 98.97 99.32 98.04 98.44 98.49 97.93 98.82 99.06 99.50 98.83 99.56 99.08 98.48 98.75 99.17 98.66 99.78 98.57 99.21 98.60 99.32 99.70 98.14 99.13 99.13 99.35 99.62 98.35 98.64 98.74 98.63 98.33 98.26 99.01 99.01 98.09 98.98 99.53 99.38 98.81 98.62 99.38 99.42 99.58 98.46 98.88 99.57 97.68 98.98 99.35 98.82 99.16 98.76 98.93 98.97 99.60 98.89 99.14 K intron_retention Pdsw chr2L + chr2L_3466417_3466786 chr2L_3466416_3466417;chr2L_3466786_3466787 chr2L_3466316_3466416;chr2L_3466787_3467062 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.61 0.00 0.00 0.00 1.08 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.73 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.41 0.00 0.43 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.45 1.04 N mutually_exclusive CG34413,I_chr2R_20771136_20772048,I_chr2R_20772104_20773774,RI_chr2R_20772104_20774745,C_chr2R_20772691_20773500,I_chr2R_20773500_20774745 chr2R + chr2R_20771136_20772048,chr2R_20774473_20774745 chr2R_20771136_20771196,chr2R_20771258_20774745 chr2R_20772049_20774472 chr2R_20771197_20771257 chr2R_20771036_20771135;chr2R_20774746_20774845 87.50 94.12 94.74 69.23 93.33 91.30 73.08 90.00 87.50 57.14 64.71 88.24 78.57 90.00 90.00 87.50 85.71 77.78 90.91 94.44 88.89 97.62 87.80 92.11 82.61 56.67 90.91 66.67 70.83 85.19 91.67 72.73 93.55 76.67 93.75 61.29 81.40 85.71 84.38 97.67 81.82 92.31 76.47 94.29 89.36 90.32 93.33 84.44 92.00 83.87 81.25 84.62 91.30 85.00 83.33 95.83 80.95 96.88 K jcn_only_AA CG12582 chr3R + chr3R_23594_23930;chr3R_23594_23980 chr3R_23594_23942 chr3R_23459_23593;chr3R_23981_24494 4.84 2.23 5.87 5.87 5.05 3.25 13.42 2.76 3.83 4.41 3.09 4.97 3.63 3.29 3.05 4.91 6.25 5.03 3.34 4.46 4.97 5.77 4.29 5.94 9.24 4.40 4.26 3.89 12.35 5.14 14.33 3.57 7.29 4.46 6.91 4.86 6.29 4.08 4.97 5.61 5.93 2.54 3.35 4.66 7.50 4.84 4.27 9.68 4.44 6.57 3.95 6.96 2.78 5.38 3.21 4.98 4.09 3.85 K alternative_acceptor CG13384 chr2L + chr2L_8384896_8385002 chr2L_8384896_8384996 chr2L_8384754_8384895;chr2L_8385003_8385091 95.54 98.21 94.49 96.49 96.46 91.74 94.58 97.17 97.39 95.29 96.75 95.34 92.37 94.81 97.04 97.01 94.74 95.54 96.34 95.41 96.36 95.35 95.30 98.52 96.39 96.40 92.45 87.78 98.41 95.15 94.04 93.44 98.81 93.81 92.55 95.65 96.45 92.63 96.19 96.71 93.02 94.19 97.48 95.00 94.23 95.62 94.59 92.98 96.76 98.59 96.03 92.19 97.83 96.97 93.88 96.70 91.18 96.39 K cassette CG4091,I_chr2R_19588114_19588638,I_chr2R_19588393_19588638,I_chr2R_19588393_19588935,RI_chr2R_19589178_19589633 chr2R - chr2R_19588114_19589633 chr2R_19588114_19588323;chr2R_19588393_19589633 chr2R_19588324_19588392 chr2R_19588014_19588113;chr2R_19589634_19589733 0.00 0.00 0.00 0.00 0.00 4.26 0.00 0.79 1.04 7.69 2.86 1.64 0.00 2.04 1.61 1.16 2.50 0.00 1.43 1.94 0.00 3.03 1.79 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 1.92 0.00 1.59 1.47 0.00 1.04 0.00 4.55 3.85 0.00 0.00 6.67 1.10 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention bsf chr2L - chr2L_18450176_18450238 chr2L_18450175_18450176;chr2L_18450238_18450239 chr2L_18449444_18450175;chr2L_18450239_18451960 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Mef2,I_chr2R_5804418_5804961,I_chr2R_5806354_5806933,CREFI_chr2R_5809509_5845628,I_chr2R_5814375_5816404,RI_chr2R_5846889_5846948 chr2R - chr2R_5804397_5804961 chr2R_5804418_5804961 chr2R_5804962_5805036;chr2R_5804318_5804396 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 5.00 NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA 10.00 4.26 0.00 0.00 3.45 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 K jcn_only_AA mRpL20,I_chr3L_13010705_13010775,RI_chr3L_13010729_13010775 chr3L - chr3L_13010729_13010775;chr3L_13010713_13010775 chr3L_13010705_13010775 chr3L_13010776_13010875;chr3L_13010629_13010704 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.79 0.00 0.00 0.00 1.89 0.00 3.70 0.00 0.00 0.00 NA 0.00 3.23 2.86 0.00 1.89 0.00 2.94 0.00 4.48 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 3.12 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 K intron_retention CG8397 chr2R - chr2R_11903770_11903835 chr2R_11903769_11903770;chr2R_11903835_11903836 chr2R_11903540_11903769;chr2R_11903836_11903964 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.27 0.29 0.81 0.77 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 K alternative_donor Cep135,RI_chr3L_15120510_15120565 chr3L + chr3L_15120385_15120565 chr3L_15120510_15120565 chr3L_15120566_15120665;chr3L_15120117_15120384 6.67 NA 0.00 10.81 NA 6.67 19.05 10.71 3.33 NA NA 8.33 25.00 5.56 12.50 3.70 5.56 7.14 10.53 2.70 NA 25.00 12.50 7.14 NA 0.00 18.75 62.50 5.26 6.25 0.00 4.35 9.09 4.55 9.09 20.00 0.00 NA 14.29 3.12 7.41 6.90 NA 6.67 0.00 3.23 14.29 2.56 3.85 13.04 5.88 NA NA NA 3.85 0.00 NA 3.33 K alternative_donor Best1,I_chr3R_5991957_5995913,RI_chr3R_5993184_5995905 chr3R - chr3R_5989579_5990440;chr3R_5989579_5990058 chr3R_5989579_5990296 chr3R_5988921_5989578;chr3R_5990441_5990683 5.33 5.56 5.06 4.90 0.00 7.04 3.80 5.98 1.76 1.08 6.06 6.00 6.67 2.41 6.32 4.30 3.45 0.00 4.05 4.73 2.82 6.82 6.29 1.56 3.03 6.78 5.36 2.94 3.03 3.75 3.09 6.12 8.45 5.74 5.33 9.59 6.04 5.36 3.29 5.16 8.96 5.41 7.69 5.08 2.67 4.50 7.14 5.80 3.73 5.13 2.38 7.41 9.38 5.75 4.65 5.94 6.06 10.61 K alternative_acceptor Txl chr3L + chr3L_5759476_5759562 chr3L_5759476_5759532 chr3L_5759407_5759475;chr3L_5759563_5759627 100.00 100.00 100.00 100.00 100.00 98.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.70 99.23 98.25 100.00 98.90 100.00 100.00 98.86 98.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.98 100.00 99.07 99.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG5484 chr3R + chr3R_22543722_22544049 chr3R_22543721_22543722;chr3R_22544049_22544050 chr3R_22543570_22543721;chr3R_22544050_22544588 7.83 7.37 10.45 5.94 2.99 6.67 4.08 4.24 3.77 6.00 1.10 11.40 2.82 9.26 5.56 9.46 2.90 0.00 6.06 8.05 0.00 34.52 9.17 8.51 10.17 6.90 15.00 10.00 14.93 9.52 16.90 10.00 21.15 3.00 10.20 10.00 6.54 6.67 8.97 14.13 19.35 6.52 6.56 6.98 14.75 10.71 8.14 20.29 7.83 9.86 11.24 5.63 5.88 6.52 6.06 5.38 1.14 8.20 K alternative_donor CG1021,I_chr3R_2217711_2231099,I_chr3R_2217711_2231390,RI_chr3R_2217711_2231463,I_chr3R_2218465_2231390,RI_chr3R_2218465_2231463,I_chr3R_2218682_2231463,I_chr3R_2219634_2231390,I_chr3R_2231383_2231463 chr3R - chr3R_2219634_2231463 chr3R_2219634_2231099 chr3R_2219534_2219633;chr3R_2231464_2231490 91.23 95.65 96.43 100.00 94.12 96.00 94.44 83.72 92.59 82.35 100.00 89.74 92.50 90.91 86.21 89.19 94.44 94.74 93.33 96.30 95.00 93.22 92.00 92.50 96.00 84.00 91.43 82.50 91.23 88.89 82.14 86.36 80.95 89.74 81.08 97.67 91.67 86.21 96.15 90.00 85.42 88.89 100.00 91.67 91.67 85.42 88.57 87.32 90.20 90.24 86.05 100.00 85.42 100.00 86.49 82.76 91.49 90.72 K intron_retention CG6236 chr3R - chr3R_11153785_11153876 chr3R_11153784_11153785;chr3R_11153876_11153877 chr3R_11153649_11153784;chr3R_11153877_11153988 4.90 5.71 0.00 9.76 NA 0.00 9.38 7.69 7.25 0.00 NA 2.00 NA NA 10.53 9.09 NA NA NA 6.17 NA 9.52 1.89 9.09 9.52 NA 8.20 3.23 0.00 8.47 0.00 3.64 4.90 0.00 0.00 0.00 6.67 0.00 8.89 5.26 0.00 3.39 NA 6.67 7.32 3.39 0.00 4.44 7.55 9.52 7.55 4.55 0.00 0.00 0.00 4.76 5.77 5.88 K jcn_only_AA RpL12,I_chr2R_19948517_19948655,RI_chr2R_19948517_19948677,I_chr2R_19948517_19948682 chr2R + chr2R_19948517_19948672;chr2R_19948517_19948682;chr2R_19948517_19948677 chr2R_19948517_19948655 chr2R_19948417_19948516;chr2R_19948683_19948755 0.00 0.01 0.02 0.01 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.02 0.03 0.00 0.00 0.03 0.00 0.00 0.16 0.00 0.02 0.03 0.02 0.00 0.02 0.00 0.00 0.02 0.02 0.01 0.00 0.00 0.00 0.00 0.02 0.02 0.00 0.01 0.00 0.02 0.03 0.00 0.00 0.01 0.01 0.00 0.01 0.01 0.00 K intron_retention CG14777,CG14778 chrX + chrX_1360963_1361835 chrX_1360962_1360963;chrX_1361835_1361836 chrX_1360741_1360962;chrX_1361836_1361997 11.38 14.29 12.90 8.00 6.67 11.43 13.04 8.33 10.29 8.33 25.00 13.11 12.50 15.79 9.09 NA 4.55 14.29 14.29 16.95 6.67 42.86 11.32 9.86 10.53 10.00 16.22 24.00 10.53 2.70 23.33 16.22 16.67 5.56 6.67 15.15 7.81 3.77 6.98 14.89 16.67 7.41 0.00 14.29 8.62 11.54 12.07 30.77 18.37 12.77 10.00 4.76 5.26 8.82 13.64 9.09 7.84 31.03 K intron_retention CG9706 chr3L + chr3L_16776346_16776407 chr3L_16776345_16776346;chr3L_16776407_16776408 chr3L_16776278_16776345;chr3L_16776408_16777812 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 NA 5.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 7.41 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 K intron_retention BtbVII,I_chr3L_3150858_3150927,I_chr3L_3151185_3151263 chr3L + chr3L_3151185_3151263 chr3L_3151184_3151185;chr3L_3151263_3151264 chr3L_3151085_3151184;chr3L_3151264_3151363 36.50 NA NA NA NA NA NA NA NA NA NA NA NA NA 26.32 NA NA NA NA NA NA NA NA NA NA NA NA 46.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention mago chr2R + chr2R_17016460_17016517 chr2R_17016459_17016460;chr2R_17016517_17016518 chr2R_17016094_17016459;chr2R_17016518_17017272 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 4.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor skpA chrX + chrX_550433_551131;chrX_550498_551131;chrX_550818_551131;chrX_550774_551131;chrX_550523_551131;chrX_550654_551131 chrX_550638_551131 chrX_551132_551937;chrX_550426_550432 11.48 10.45 8.62 21.70 9.43 9.43 18.56 16.22 5.14 12.12 12.07 12.79 7.35 8.77 8.62 10.91 10.00 24.66 12.86 11.48 14.81 8.82 10.14 11.11 13.89 14.08 18.52 10.64 26.23 13.33 10.61 8.89 10.00 10.00 16.13 15.38 8.08 7.14 11.48 10.47 20.45 9.73 11.36 8.47 14.29 17.46 7.41 16.33 11.11 12.07 13.33 8.47 13.04 12.12 12.16 10.29 14.93 19.32 K intron_retention MBD-like chr3R + chr3R_5386336_5386644 chr3R_5386335_5386336;chr3R_5386644_5386645 chr3R_5386272_5386335;chr3R_5386645_5387357 35.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 46.15 40.00 NA NA NA NA 35.71 NA NA NA NA 11.11 NA NA 28.57 NA NA 35.71 35.29 NA NA NA NA 8.70 NA 60.00 NA NA 36.36 NA NA NA NA NA NA NA 0.00 K jcn_only_AD CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516706_21517821;chr3L_21516330_21517821;chr3L_21516399_21517821;chr3L_21517168_21517821;chr3L_21516722_21517821;chr3L_21516501_21517821;chr3L_21516918_21517821;chr3L_21516343_21517821 chr3L_21516728_21517821 chr3L_21517822_21517920;chr3L_21516311_21516329 24.00 31.82 28.00 26.32 20.00 28.57 18.64 14.29 28.00 NA NA 19.05 NA 21.74 24.00 30.77 10.00 26.67 NA 11.67 NA 8.00 42.42 18.18 NA 25.00 23.81 NA 54.55 NA 12.82 NA 44.44 24.49 NA 30.00 21.43 25.00 NA 14.58 NA 13.56 17.39 33.33 NA 25.00 19.05 28.57 22.95 NA NA NA NA NA 11.11 NA NA 35.00 K intron_retention CG32521,I_chrX_21077138_21082106,I_chrX_21077612_21082713,EI_chrX_21080561_21082106,I_chrX_21080906_21082713,CREF_chrX_21082827_21152068,EF_chrX_21094675_21152068 chrX - chrX_21080561_21082106 chrX_21080560_21080561;chrX_21082106_21082107 chrX_21080549_21080560;chrX_21082107_21082206 39.56 34.21 45.16 70.00 36.36 37.04 44.19 35.00 49.23 46.88 47.83 45.28 NA 55.00 42.86 46.67 57.89 73.91 55.00 39.68 57.14 86.57 61.36 36.36 35.00 60.00 52.00 57.50 46.34 40.35 39.13 36.36 34.91 45.24 42.86 50.00 36.25 35.59 35.59 39.44 29.03 38.98 38.89 35.29 37.70 21.74 48.15 27.71 36.84 41.18 45.00 36.84 26.92 36.84 36.00 15.15 24.56 16.55 K jcn_only_AD Liprin-alpha chr2L + chr2L_6727323_6727862 chr2L_6727335_6727862 chr2L_6727863_6728780;chr2L_6727194_6727322 51.67 40.00 46.97 49.35 60.53 48.28 47.67 61.54 50.39 46.34 60.00 54.41 60.00 42.42 47.50 52.34 38.10 50.00 55.74 53.24 51.67 60.83 44.57 47.62 46.34 45.33 52.54 41.18 62.04 54.22 44.44 64.86 55.32 58.33 55.36 49.23 45.10 51.79 45.12 56.38 50.85 59.31 64.81 41.67 56.60 54.12 45.83 54.40 56.46 38.89 42.67 52.08 41.94 55.56 46.24 54.55 35.29 64.04 K jcn_only_AA CG17471,RI_chr4_1213397_1214333,RI_chr4_1213397_1216053,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1213289_1213331;chr4_1213279_1213331 chr4_1213275_1213331 chr4_1213332_1213341;chr4_1213122_1213274 1.54 4.26 2.70 3.23 NA 3.45 0.00 3.12 2.86 NA NA 4.05 2.04 0.00 0.00 0.82 0.00 6.67 0.00 1.15 NA NA 4.00 1.82 0.00 NA 2.27 NA NA 0.00 0.00 0.00 6.25 0.00 0.00 4.17 0.00 8.33 2.63 6.98 0.00 1.27 2.63 0.00 0.00 2.08 0.00 8.57 0.94 1.69 1.37 0.00 3.03 1.64 0.00 1.54 0.00 2.56 K intron_retention CG7637,CG12341 chr2R - chr2R_6698263_6698327 chr2R_6698262_6698263;chr2R_6698327_6698328 chr2R_6697928_6698262;chr2R_6698328_6698520 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 K intron_retention Pabp2,I_chr2R_4020297_4020426 chr2R + chr2R_4020581_4020642 chr2R_4020580_4020581;chr2R_4020642_4020643 chr2R_4020447_4020580;chr2R_4020643_4020713 36.36 NA NA NA NA NA 60.00 23.53 50.00 NA 36.36 29.41 NA NA 50.00 NA 28.57 NA 23.08 23.53 35.71 66.67 41.67 NA NA 66.67 NA NA 85.71 NA NA NA NA 36.36 NA NA NA NA 45.45 54.55 NA 27.78 NA NA NA NA NA NA 35.29 NA NA NA NA NA NA NA NA NA K alternative_donor RpL27,I_chr3R_21510239_21510298,RI_chr3R_21510239_21510441,I_chr3R_21510239_21510464,I_chr3R_21510239_21510656,I_chr3R_21510239_21510726 chr3R - chr3R_21510239_21510656;chr3R_21510239_21510739;chr3R_21510239_21510680;chr3R_21510239_21510298;chr3R_21510239_21510746 chr3R_21510239_21510464 chr3R_21510139_21510238;chr3R_21510747_21510756 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 9.09 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 2.04 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor msb1l chr2L + chr2L_19577826_19578039 chr2L_19577975_19578039 chr2L_19578040_19579131;chr2L_19577735_19577825 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.82 98.36 97.67 99.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.82 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.86 100.00 100.00 100.00 100.00 98.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor cora,I_chr2R_15125277_15130573,I_chr2R_15125940_15130208,I_chr2R_15129291_15129988 chr2R + chr2R_15129901_15129994 chr2R_15129901_15129988 chr2R_15129679_15129900;chr2R_15129995_15130088 96.62 96.46 95.11 97.52 97.99 96.02 97.16 96.52 96.43 96.72 97.48 96.25 99.16 97.08 96.70 98.55 96.88 96.77 98.61 96.66 96.13 96.74 94.67 96.63 98.67 96.23 95.05 92.26 94.38 95.59 94.55 97.57 97.03 96.33 97.59 94.51 95.51 97.67 97.04 96.34 96.86 96.50 97.16 94.40 96.39 96.73 96.63 96.21 96.62 94.46 97.97 95.15 96.05 96.67 94.74 96.63 96.54 95.02 K intron_retention GXIVsPLA2,I_chr3L_15948429_15948487,I_chr3L_15950680_15950738 chr3L + chr3L_15948415_15948487 chr3L_15948414_15948415;chr3L_15948487_15948488 chr3L_15948329_15948414;chr3L_15948488_15948587 33.33 NA NA NA NA NA NA NA NA NA NA 54.55 NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor alpha-Cat,I_chr3L_23319861_23321813,I_chr3L_23327841_23328002 chr3L - chr3L_23312573_23318741 chr3L_23312575_23318741 chr3L_23318742_23318923;chr3L_23312334_23312572 100.00 95.00 95.00 97.83 100.00 100.00 93.88 97.92 97.92 100.00 100.00 100.00 95.00 100.00 100.00 98.28 100.00 100.00 94.74 95.12 100.00 100.00 100.00 100.00 100.00 100.00 88.24 100.00 90.91 100.00 100.00 100.00 100.00 97.92 94.74 100.00 100.00 NA NA 100.00 95.00 97.50 96.77 94.44 100.00 96.43 100.00 92.00 94.92 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 94.87 K intron_retention CG2519 chr3R - chr3R_1367216_1367275 chr3R_1367215_1367216;chr3R_1367275_1367276 chr3R_1367051_1367215;chr3R_1367276_1367558 4.92 9.52 3.70 37.50 0.00 8.00 6.45 13.64 5.26 0.00 13.33 6.90 10.00 11.11 14.29 0.00 4.55 NA 0.00 8.24 NA 8.79 4.92 2.27 5.26 0.00 8.93 3.85 10.81 4.55 14.29 4.55 7.25 6.82 5.77 1.92 7.14 0.00 2.41 7.27 6.67 6.67 0.00 2.13 3.92 0.00 3.45 5.41 4.84 7.55 3.33 6.82 0.00 0.00 0.00 0.00 0.00 2.94 K alternative_acceptor Fancl chr3R - chr3R_5877305_5877364 chr3R_5877308_5877364 chr3R_5877365_5877428;chr3R_5877254_5877304 79.49 NA NA NA NA NA NA NA 92.31 NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor Tango2,I_chrX_13512436_13512575,RI_chrX_13543535_13546911,I_chrX_13544101_13544542 chrX + chrX_13512436_13512629 chrX_13512436_13512575 chrX_13512336_13512435;chrX_13512630_13512675 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 5.71 NA 0.00 2.94 0.00 5.56 0.00 0.00 0.00 NA 0.00 2.56 0.00 6.67 4.00 0.00 0.00 NA 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 2.56 0.00 0.00 5.71 NA 0.00 0.00 0.00 2.70 0.00 0.00 3.45 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 N alternative_donor CG11357,I_chr3L_4542781_4542858,C_chr3L_4563905_4578759 chr3L + chr3L_4542249_4551001 chr3L_4542908_4551001 chr3L_4551002_4551938;chr3L_4542167_4542248 100.00 100.00 100.00 94.86 100.00 100.00 100.00 100.00 100.00 100.00 93.55 98.31 100.00 100.00 100.00 97.58 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.93 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.34 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N jcn_only_AA CG40467 chr3LHet - chr3LHet_722704_789080;chr3LHet_787757_789080 chr3LHet_787974_789080 chr3LHet_789081_789255;chr3LHet_722418_722703 0.00 0.00 0.00 41.03 NA 0.00 0.00 0.00 13.16 NA NA 21.43 33.33 0.00 NA 17.39 NA 0.00 0.00 23.66 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 14.77 NA 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2395659 chrX_2388671_2392054;chrX_2392149_2392515;chrX_2392665_2393243;chrX_2393712_2395659 chrX_2392055_2392148;chrX_2392516_2392664;chrX_2393244_2393711 chrX_2388641_2388670;chrX_2395660_2395759 40.00 NA NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.00 11.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor RpL30,I_chr2L_19008540_19008948,REI_chr2L_19008544_19008723,I_chr2L_19008544_19008918,snoRNA:Me28S-A2113 chr2L - chr2L_19008544_19008723;chr2L_19008544_19008918 chr2L_19008544_19008948 chr2L_19008444_19008543;chr2L_19008949_19009018 98.64 99.12 98.80 98.82 98.73 98.87 98.80 98.80 98.78 98.51 98.71 98.60 98.75 98.72 98.94 98.28 99.08 98.78 98.52 98.53 98.64 92.59 98.47 98.58 98.26 98.82 98.70 98.21 98.33 98.65 92.81 98.29 98.06 98.64 98.45 98.72 98.82 98.66 98.69 98.26 98.42 98.77 98.65 98.71 98.66 98.63 98.60 98.00 97.38 98.11 97.84 98.61 98.90 98.74 98.55 98.55 98.89 98.41 K alternative_donor CDase chr3R + chr3R_26286512_26288536;chr3R_26286611_26288536;chr3R_26286613_26288536;chr3R_26286631_26288536 chr3R_26286617_26288536 chr3R_26288537_26288691;chr3R_26286221_26286511 0.00 NA NA 0.00 NA NA NA NA 0.00 0.00 NA 0.00 NA NA 11.11 NA NA NA NA NA NA NA 7.69 7.69 0.00 NA 7.14 NA 0.00 NA NA NA 9.09 0.00 0.00 0.00 NA NA 0.00 3.57 NA NA NA 0.00 NA 7.14 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 10.00 K alternative_acceptor CG3500,RI_chr2R_19244231_19244378 chr2R - chr2R_19244194_19244378 chr2R_19244211_19244378 chr2R_19244379_19244478;chr2R_19244131_19244193 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.71 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 1.59 0.00 0.00 1.26 2.00 0.00 0.00 0.00 0.00 0.82 1.11 0.00 0.63 1.04 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.93 2.08 0.00 0.61 0.00 0.48 0.00 1.12 0.71 0.79 0.00 0.00 0.49 0.00 0.00 0.43 0.63 K intron_retention CG13585,I_chr2R_20419710_20419962,E_chr2R_20420167_20420418 chr2R + chr2R_20419160_20419962 chr2R_20419159_20419160;chr2R_20419962_20419963 chr2R_20419149_20419159;chr2R_20419963_20420062 21.43 NA NA NA NA NA NA 14.29 16.67 NA 38.46 25.00 18.75 NA NA NA NA NA NA 33.33 50.00 NA NA NA NA NA NA NA NA NA 17.65 NA NA 30.77 NA NA NA NA NA NA NA 16.00 NA NA NA NA NA NA 21.43 NA NA NA NA NA 12.50 NA 35.29 NA K intron_retention Dscam,F_chr2R_3219886_3225754,I_chr2R_3219886_3226532,FI_chr2R_3219886_3227659,F_chr2R_3219886_3228449,F_chr2R_3219886_3228832,F_chr2R_3226043_3235353,F_chr2R_3227948_3235353,F_chr2R_3228738_3235353,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3219886_3232989 chr2R_3219885_3219886;chr2R_3232989_3232990 chr2R_3219786_3219885;chr2R_3232990_3233013 36.36 NA NA 61.11 NA 58.33 41.67 52.63 40.00 NA NA 47.06 25.00 36.36 42.86 NA 45.45 NA 41.67 16.67 NA NA 33.33 NA NA NA NA NA 25.00 29.41 47.37 NA 10.53 36.36 NA NA 22.22 NA 40.00 25.00 NA 41.38 NA 28.57 NA NA NA NA 28.57 NA 35.71 NA NA NA 31.25 NA NA NA K intron_retention CG18624,RI_chrX_7787450_7787620,RI_chrX_7787450_7787687,RI_chrX_7787524_7787687 chrX - chrX_7787524_7787782 chrX_7787523_7787524;chrX_7787782_7787783 chrX_7787424_7787523;chrX_7787783_7787787 4.08 0.00 2.58 13.46 0.78 1.50 5.51 4.89 3.17 NA 1.15 4.15 2.27 2.08 2.84 5.37 1.94 2.75 2.82 2.02 1.80 26.67 12.50 11.54 13.04 3.92 46.15 NA NA NA 3.75 7.14 8.00 2.04 NA 46.67 14.29 0.00 5.26 6.98 8.00 2.45 2.04 NA 3.30 13.04 10.00 7.41 1.12 NA 10.00 10.53 2.78 NA 2.48 10.53 4.08 5.71 K jcn_only_AD shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9791078_9791208 chr2R - chr2R_9804713_9805353 chr2R_9804713_9805070 chr2R_9804623_9804712 0.00 0.00 2.33 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention CG8735,noncoding_5214 chr2R - chr2R_4485795_4486076 chr2R_4485794_4485795;chr2R_4486076_4486077 chr2R_4485618_4485794;chr2R_4486077_4486512 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette ben chrX + chrX_13890557_13892127 chrX_13890557_13890648;chrX_13890762_13892127 chrX_13890649_13890761 chrX_13890387_13890556;chrX_13892128_13892800 1.23 0.00 1.69 1.65 0.00 0.00 2.92 0.00 1.42 1.32 1.41 1.23 1.25 0.00 1.32 1.12 0.00 0.83 1.48 1.46 2.22 0.91 0.78 0.90 0.00 0.86 0.00 1.56 1.34 1.37 0.69 2.83 0.00 1.04 2.20 1.12 1.82 0.00 1.12 2.45 1.41 1.24 2.04 1.02 1.26 1.22 1.11 1.48 1.69 1.39 1.75 0.00 1.20 1.06 0.64 1.75 2.60 1.10 K alternative_donor CEI_chrX_17177009_17196871,CG5445,I_chrX_17196752_17196871,RI_chrX_17196772_17196871,I_chrX_17196820_17196875,I_chrX_17198393_17198730 chrX + chrX_17196681_17196871;chrX_17196820_17196871;chrX_17196541_17196871;chrX_17196617_17196871 chrX_17196546_17196871 chrX_17196872_17196971;chrX_17196536_17196540 0.00 0.00 0.00 0.00 11.11 0.00 0.00 15.38 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor Pmi,PGRP-LD chr3L + chr3L_5775409_5775770 chr3L_5775409_5775724 chr3L_5775097_5775408;chr3L_5775771_5775948 25.66 NA NA 5.88 7.14 NA 31.58 6.67 31.03 NA NA 38.46 NA NA 18.75 30.00 NA NA NA 27.27 NA 33.33 26.67 NA NA 50.00 NA NA NA NA 28.00 NA 21.43 15.79 NA NA 20.00 NA NA 50.00 NA 19.35 15.38 NA NA NA NA NA 25.00 NA 18.18 NA NA 40.00 6.25 NA 26.32 NA K jcn_only_AD sbb,I_chr2R_14193641_14243004,noncoding_7736,RI_chr2R_14243561_14244282,I_chr2R_14243561_14244715 chr2R - chr2R_14243561_14244642;chr2R_14243561_14244715 chr2R_14243561_14244596 chr2R_14243461_14243560;chr2R_14244716_14244766 19.98 NA NA NA NA NA NA NA 8.00 NA NA NA NA NA NA 17.24 NA NA NA 22.73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD Pp2C1,I_chrX_4577968_4578285 chrX - chrX_4577968_4579144 chrX_4577968_4578285 chrX_4577868_4577967;chrX_4579145_4580826 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 3.23 0.00 0.00 2.78 1.18 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 2.38 3.70 0.00 0.00 2.22 2.33 0.62 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 1.79 3.33 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD sbb,I_chr2R_14193641_14243004,noncoding_7736,RI_chr2R_14243561_14244282,I_chr2R_14243561_14244715 chr2R - chr2R_14243561_14244642;chr2R_14243561_14244596 chr2R_14243561_14244715 chr2R_14243461_14243560;chr2R_14244716_14244766 19.50 NA NA NA NA NA NA NA 36.00 NA NA NA NA NA NA 10.34 NA NA NA 18.18 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.83 NA NA NA NA NA NA NA NA NA K jcn_only_AD btz,I_chr3R_23526114_23526320 chr3R + chr3R_23526114_23526320 chr3R_23526248_23526320 chr3R_23526321_23526420;chr3R_23526112_23526113 100.00 NA NA 100.00 NA 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA 96.55 K intron_retention tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_561280_561363 chr3R_561279_561280;chr3R_561363_561364 chr3R_561130_561279;chr3R_561364_561525 0.73 1.25 0.00 1.41 1.45 0.00 1.81 0.92 1.34 0.00 1.36 2.03 0.00 0.00 0.56 0.76 0.58 0.00 1.10 1.29 0.68 1.32 1.74 1.64 1.87 3.26 2.62 1.16 3.81 0.00 1.02 0.00 1.27 0.69 0.00 0.93 2.34 0.76 0.00 1.28 0.00 0.61 0.68 0.00 0.00 0.63 0.53 0.00 0.60 0.73 0.00 0.78 0.91 0.00 0.00 0.00 0.00 1.65 K cassette CG5674 chr2L + chr2L_17963606_17971871;chr2L_17963606_17972262 chr2L_17963606_17969371;chr2L_17969519_17971871,chr2L_17969519_17972262 chr2L_17969372_17969518 chr2L_17963396_17963605;chr2L_17972263_17974832 96.23 93.33 100.00 62.50 100.00 92.86 88.24 96.30 97.22 95.65 92.86 96.43 92.31 94.12 94.12 94.12 92.86 92.31 94.12 89.66 100.00 97.50 100.00 100.00 93.75 100.00 92.31 88.89 97.96 100.00 94.74 95.45 96.23 100.00 96.00 95.65 96.67 94.74 96.30 98.41 95.65 96.77 93.33 96.30 100.00 97.14 100.00 98.61 100.00 100.00 100.00 100.00 100.00 90.91 95.65 94.12 100.00 96.15 K intron_retention CG13197 chr2R + chr2R_7582087_7582159 chr2R_7582086_7582087;chr2R_7582159_7582160 chr2R_7581979_7582086;chr2R_7582160_7582345 0.00 NA 0.00 0.00 NA 0.00 5.00 0.00 2.56 NA NA 0.00 0.00 NA 0.00 5.88 0.00 NA 0.00 4.55 NA NA 0.00 0.00 NA 0.00 4.76 NA NA NA NA NA NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 5.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 K alternative_acceptor CG12118,RI_chrX_9090173_9090228 chrX - chrX_9090153_9090228 chrX_9090170_9090228 chrX_9090229_9090294;chrX_9090085_9090152 13.02 NA NA NA NA NA 17.65 0.00 10.00 NA NA 10.00 NA NA NA NA NA NA NA 18.18 NA NA 11.76 NA NA 25.00 NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA 15.38 NA NA NA NA NA NA 11.76 NA 14.29 NA NA NA NA NA 6.67 NA N intron_retention RpL3,E_chr3R_7047964_7050565,I_chr3R_7048452_7049579,snoRNA:Psi28S-291,E_chr3R_7049697_7049750,I_chr3R_7049970_7050189,snoRNA:Me28S-G2017 chr3R + chr3R_7049253_7050212 chr3R_7049252_7049253;chr3R_7050212_7050213 chr3R_7049117_7049252;chr3R_7050213_7050289 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 24.32 100.00 NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 100.00 100.00 NA NA NA NA NA NA 100.00 K intron_retention CG11071 chrX - chrX_13749152_13749267 chrX_13749151_13749152;chrX_13749267_13749268 chrX_13748685_13749151;chrX_13749268_13750792 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 2.70 2.78 1.72 1.87 0.00 0.87 0.00 0.00 0.00 0.00 0.91 2.22 0.00 1.92 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 1.03 0.00 0.69 0.00 0.00 0.00 0.74 0.00 2.22 0.00 1.24 0.00 0.00 1.37 0.00 2.99 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7889 chrX + chrX_19137845_19137909 chrX_19137844_19137845;chrX_19137909_19137910 chrX_19137695_19137844;chrX_19137910_19138690 6.67 6.67 0.00 16.00 NA 0.00 4.00 12.00 10.00 4.00 NA 11.76 NA 10.53 6.90 4.00 NA 7.14 4.17 8.00 7.14 9.43 9.52 4.65 5.56 NA 7.50 6.90 16.67 0.00 9.09 2.70 6.06 11.11 2.13 3.03 10.87 7.41 12.50 4.84 0.00 4.55 NA 6.67 4.62 2.99 8.70 1.59 9.52 9.52 10.53 5.56 7.69 4.84 4.35 2.44 2.90 5.06 K intron_retention CG5104 chr3L + chr3L_20514685_20514759 chr3L_20514684_20514685;chr3L_20514759_20514760 chr3L_20514515_20514684;chr3L_20514760_20514877 1.96 0.00 2.47 2.33 0.00 2.86 1.72 2.63 1.54 0.00 0.00 1.38 0.00 3.33 1.94 1.03 0.00 5.56 1.02 1.76 2.30 1.47 3.77 3.39 0.00 2.27 2.22 2.44 8.51 0.00 0.00 0.00 2.50 2.26 0.00 1.72 0.00 2.63 4.85 1.96 1.69 0.00 0.00 3.06 3.03 2.30 4.04 6.25 2.72 2.63 6.98 1.59 1.94 0.00 1.96 2.50 2.40 2.53 K intron_retention CG1998 chrX - chrX_13303783_13303846 chrX_13303782_13303783;chrX_13303846_13303847 chrX_13303327_13303782;chrX_13303847_13304301 0.00 0.00 NA 19.05 NA 11.76 6.67 3.45 2.70 NA 0.00 3.70 NA NA 0.00 0.00 NA NA NA 0.00 0.00 5.26 0.00 0.00 7.14 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.56 NA 0.00 0.00 4.00 0.00 0.00 5.71 0.00 0.00 0.00 NA 0.00 0.00 5.71 0.00 0.00 K intron_retention Neu3,F_chr3R_10498229_10498337,RI_chr3R_10509463_10522206 chr3R - chr3R_10498246_10522206 chr3R_10498245_10498246;chr3R_10522206_10522207 chr3R_10498145_10498245;chr3R_10522207_10522306 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 5.66 2.33 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention per,noncoding_21656 chrX + chrX_2585671_2585740 chrX_2585670_2585671;chrX_2585740_2585741 chrX_2585072_2585670;chrX_2585741_2585977 5.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CkIIbeta,I_chrX_11686847_11687475,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11687025_11687475;chrX_11686948_11687475;chrX_11687313_11687475 chrX_11686979_11687475 chrX_11687476_11687551;chrX_11686929_11686947 4.55 4.17 6.00 5.41 5.26 4.88 10.00 6.58 11.43 NA 3.57 1.28 7.32 10.53 10.42 2.63 7.32 6.67 10.53 8.82 0.00 2.38 3.85 4.88 4.55 3.12 2.04 NA 0.00 2.50 6.56 5.00 2.56 5.48 3.45 0.00 8.57 3.45 3.45 0.00 2.13 10.11 4.44 4.55 6.67 0.00 8.82 0.00 7.29 0.00 0.00 2.50 8.82 0.00 8.00 17.14 1.89 2.44 N alternative_donor CG6199 chr3L - chr3L_11196773_11198004 chr3L_11196773_11197305 chr3L_11196633_11196772;chr3L_11198005_11198090 30.00 20.69 19.23 15.48 14.29 19.05 44.90 17.82 24.14 55.56 38.46 25.00 18.00 17.02 18.18 22.06 18.00 20.83 16.39 26.44 30.00 50.00 38.30 27.08 40.00 22.00 34.21 72.73 47.37 31.25 46.81 41.18 21.82 18.99 33.33 46.67 33.33 42.86 33.33 30.51 35.00 20.75 19.15 25.32 50.00 40.00 35.48 37.21 20.69 31.43 35.42 36.00 11.11 33.33 18.64 22.86 36.84 19.44 K multi_cassette pyd,I_chr3R_4654041_4664113,I_chr3R_4749124_4756437 chr3R - chr3R_4654041_4664113 chr3R_4654041_4654556;chr3R_4656728_4657863;chr3R_4657997_4658075;chr3R_4658368_4658425;chr3R_4658667_4659696;chr3R_4659797_4659860;chr3R_4660010_4660078;chr3R_4660672_4664113 chr3R_4654557_4656727;chr3R_4657864_4657996;chr3R_4658076_4658367;chr3R_4658426_4658666;chr3R_4659697_4659796;chr3R_4659861_4660009;chr3R_4660079_4660671 chr3R_4653941_4654040;chr3R_4664114_4664213 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG15347,I_chrX_8353371_8353552,I_chrX_8353371_8354203,I_chrX_8353497_8353552 chrX - chrX_8353371_8354798 chrX_8353370_8353371;chrX_8354798_8354799 chrX_8353271_8353370;chrX_8354799_8354949 4.81 3.80 3.60 6.18 6.85 3.28 20.23 6.05 5.52 7.96 6.96 4.55 5.10 7.45 4.81 3.39 5.22 3.52 5.52 5.45 7.38 2.88 2.85 4.46 6.92 6.18 4.06 6.37 8.23 2.30 4.06 4.55 1.42 5.54 5.33 14.40 4.00 4.02 5.26 7.25 8.39 5.10 5.00 4.96 8.67 3.64 3.29 6.80 4.68 4.39 3.85 4.40 3.50 1.93 4.46 1.99 3.86 3.21 K intron_retention RpL3,E_chr3R_7047964_7050565,I_chr3R_7048451_7049116,I_chr3R_7048452_7048540,I_chr3R_7048452_7049579,snoRNA:Me18S-A425,snoRNA:Psi28S-291,I_chr3R_7049970_7050189 chr3R + chr3R_7048452_7049116 chr3R_7048451_7048452;chr3R_7049116_7049117 chr3R_7048352_7048451;chr3R_7049117_7049216 4.14 5.11 3.04 3.02 3.33 3.13 4.20 3.15 3.37 5.27 2.84 2.89 3.50 3.67 3.06 3.40 3.37 3.06 3.08 3.02 3.48 4.64 6.01 5.62 8.11 2.82 5.74 10.33 4.16 4.14 7.43 4.04 4.53 3.64 5.88 6.31 4.71 9.87 5.49 5.42 4.59 3.07 2.85 4.88 3.37 4.14 4.63 2.82 5.59 7.05 8.06 6.59 4.23 5.96 3.16 7.35 3.97 2.83 K intron_retention Su(z)12 chr3L - chr3L_19912391_19912458 chr3L_19912390_19912391;chr3L_19912458_19912459 chr3L_19911385_19912390;chr3L_19912459_19912507 59.26 74.07 57.69 NA 66.67 56.25 58.82 70.00 47.37 66.67 36.84 63.64 50.00 68.18 63.16 87.50 62.50 77.78 80.00 60.53 43.75 25.71 67.86 52.00 46.67 47.37 76.47 NA 48.15 60.00 66.67 61.29 47.54 65.52 50.00 93.75 61.11 69.57 69.70 42.62 48.15 55.26 61.11 59.26 57.89 59.57 58.33 57.50 59.46 50.00 70.83 55.00 44.44 60.87 54.55 53.33 51.35 42.86 K intron_retention CG42507,Trl,I_chr3L_14745733_14745798,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14744876_14745798 chr3L_14744875_14744876;chr3L_14745798_14745799 chr3L_14744367_14744875;chr3L_14745799_14745836 79.28 NA 60.00 69.23 NA NA 84.62 84.21 75.00 NA NA 84.62 100.00 72.73 NA 57.14 NA NA 50.00 69.23 NA 58.33 90.00 70.00 NA NA NA NA NA 80.00 NA NA NA 81.25 NA 90.91 NA NA NA 100.00 81.82 63.64 NA NA NA 90.00 NA 75.00 84.21 78.57 63.64 NA NA NA NA 87.50 88.89 63.64 K alternative_donor CG31159 chr3R + chr3R_18440851_18440950 chr3R_18440899_18440950 chr3R_18440951_18441462;chr3R_18440681_18440850 100.00 100.00 NA 100.00 NA NA 85.71 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 87.50 NA 100.00 NA 100.00 100.00 100.00 100.00 K intron_retention sax chr2R + chr2R_3694104_3694576 chr2R_3694103_3694104;chr2R_3694576_3694577 chr2R_3694102_3694103;chr2R_3694577_3694706 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 2.94 0.00 0.00 2.94 0.00 0.00 9.09 7.41 0.00 0.00 0.00 4.00 0.00 0.00 3.57 2.38 0.00 0.00 3.64 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.41 K jcn_only_AD CG9572 chrX + chrX_20044159_20044630 chrX_20044270_20044630 chrX_20044631_20044869;chrX_20044119_20044158 91.08 100.00 NA NA NA NA NA NA 96.15 NA NA 100.00 NA NA NA NA NA NA NA 94.29 NA NA NA NA NA NA NA NA NA 90.48 NA NA NA NA NA NA 88.89 NA 89.47 92.00 NA 100.00 NA 90.32 85.19 91.67 NA NA NA 90.00 83.33 NA NA NA NA 90.00 NA 100.00 N alternative_donor He,I_chr2L_13975880_13975977 chr2L - chr2L_13972612_13972790 chr2L_13972612_13972675 chr2L_13972094_13972611;chr2L_13972791_13972964 0.24 0.19 0.61 0.65 0.00 0.51 0.54 0.66 0.54 0.00 0.23 0.27 0.13 0.54 0.12 0.45 0.52 0.31 0.22 0.24 0.00 0.00 0.00 0.32 0.00 0.00 0.26 0.00 0.28 0.17 0.20 0.00 0.00 0.28 0.27 0.26 0.00 0.00 0.29 0.25 0.00 0.28 0.28 0.29 0.16 0.00 0.39 0.06 0.34 0.38 0.00 1.07 0.00 0.26 0.22 0.00 0.26 0.14 K intron_retention pcm chrX - chrX_19380226_19380293 chrX_19380225_19380226;chrX_19380293_19380294 chrX_19379860_19380225;chrX_19380294_19380371 0.00 5.26 0.00 0.00 NA NA NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention CG5532 chr2R + chr2R_19640429_19640487 chr2R_19640428_19640429;chr2R_19640487_19640488 chr2R_19640189_19640428;chr2R_19640488_19641038 0.00 0.00 2.11 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 1.22 0.00 0.00 3.64 0.87 2.16 0.36 1.02 0.00 0.00 4.40 0.00 0.00 0.00 1.05 3.54 0.60 0.00 0.00 1.08 0.28 0.00 0.00 1.82 0.00 0.00 0.00 1.20 1.12 0.00 0.00 0.00 0.00 K intron_retention RI_chrX_11473566_11473702,roX2,noncoding_23149,I_chrX_11475074_11475402 chrX + chrX_11473158_11473702 chrX_11473157_11473158;chrX_11473702_11473703 chrX_11473148_11473157;chrX_11473703_11473726 10.53 NA NA 10.53 NA NA NA 16.67 10.53 NA NA 0.00 NA NA NA 10.00 NA NA 16.67 8.57 NA NA NA NA NA NA NA NA NA NA 18.18 NA NA 20.69 NA NA NA NA NA 0.00 NA 0.00 20.00 NA NA NA NA 6.67 18.18 NA NA NA NA NA 15.00 NA NA 0.00 K intron_retention CG6364,I_chr3R_20116610_20116825 chr3R + chr3R_20116875_20117233 chr3R_20116874_20116875;chr3R_20117233_20117234 chr3R_20116826_20116874;chr3R_20117234_20117427 2.56 0.00 0.00 2.50 0.00 0.00 12.50 8.57 2.27 NA 0.00 8.16 0.00 9.09 0.00 0.00 0.00 0.00 3.33 5.71 0.00 11.76 3.12 0.00 0.00 4.76 5.56 0.00 16.67 2.50 0.00 3.85 5.56 8.57 0.00 12.50 0.00 0.00 0.00 1.39 6.45 7.69 4.76 4.88 2.63 6.67 5.71 4.44 0.00 4.76 3.23 4.35 0.00 0.00 2.70 0.00 0.00 6.35 K alternative_acceptor CG11055 chr2R + chr2R_16145258_16145691 chr2R_16145258_16145538 chr2R_16145189_16145257;chr2R_16145692_16148064 13.48 NA 17.65 11.11 6.67 9.09 36.36 7.41 20.00 6.67 27.78 13.04 33.33 13.33 12.50 25.00 8.33 18.18 13.33 13.64 12.50 37.14 14.29 10.53 38.46 20.00 47.06 19.35 10.53 13.04 NA 0.00 4.44 14.29 9.09 42.86 11.11 NA 12.00 10.71 25.00 16.67 20.00 6.67 20.00 7.69 NA 3.23 20.59 NA 14.29 NA NA NA 21.05 NA 16.67 7.14 K alternative_acceptor CG4699 chr3R + chr3R_11624133_11624445 chr3R_11624133_11624442 chr3R_11623809_11624132;chr3R_11624446_11624758 88.89 90.00 NA 75.00 63.64 NA 100.00 91.67 81.82 NA NA 93.33 NA 87.50 90.00 87.50 NA NA NA 94.44 NA 92.86 94.74 71.43 88.89 NA 95.24 100.00 82.35 90.48 88.89 60.00 70.83 88.89 88.89 77.78 83.33 63.64 92.86 100.00 NA 87.50 NA 85.71 100.00 75.00 100.00 70.00 76.47 80.00 92.86 NA 91.67 77.78 91.67 88.89 NA 56.25 K jcn_only_AD pnr,RI_chr3R_11852561_11855192 chr3R + chr3R_11864921_11864991 chr3R_11864930_11864991 chr3R_11864992_11865268;chr3R_11864309_11864920 81.82 78.68 78.31 83.37 80.98 80.84 80.99 82.01 82.50 85.00 85.00 83.01 85.14 81.82 84.33 77.41 86.83 79.86 81.20 80.47 82.91 79.89 84.89 81.97 83.15 79.70 79.56 81.90 82.75 81.41 82.17 82.11 87.79 80.41 83.66 79.09 81.52 78.79 79.91 84.64 88.62 82.34 82.87 77.64 81.67 84.54 83.50 86.31 80.66 77.11 82.42 78.93 80.50 79.23 81.00 76.01 81.39 86.69 K intron_retention CG2681,I_chrX_2609471_2609546,RI_chrX_2622435_2622577 chrX + chrX_2604935_2605003 chrX_2604934_2604935;chrX_2605003_2605004 chrX_2604867_2604934;chrX_2605004_2605072 35.71 39.29 43.33 15.38 50.00 53.33 45.16 35.90 32.79 44.44 40.00 34.48 35.71 52.94 28.12 33.33 39.29 56.52 43.33 37.10 47.06 30.19 26.42 18.87 32.00 47.83 30.95 27.27 51.43 34.29 60.47 33.33 27.27 52.78 30.00 36.84 25.00 25.00 33.96 44.12 38.71 46.55 41.67 33.33 36.36 34.21 25.93 66.67 41.82 31.82 22.41 34.38 28.57 30.56 39.39 29.55 18.33 44.12 K intron_retention AnnIX chr3R + chr3R_16891124_16893167 chr3R_16891123_16891124;chr3R_16893167_16893168 chr3R_16891068_16891123;chr3R_16893168_16893221 0.00 NA 0.00 2.78 NA 0.00 0.00 0.00 7.41 NA 0.00 6.52 8.70 0.00 0.00 9.38 NA 0.00 6.67 0.00 4.65 0.00 NA NA NA 0.00 0.00 NA NA NA 4.65 NA NA 3.03 0.00 5.26 NA NA 0.00 NA NA 2.22 0.00 NA NA 4.35 0.00 NA 6.90 0.00 7.69 NA NA 0.00 4.76 0.00 NA NA K intron_retention CG9932,I_chr2L_13025498_13027193,I_chr2L_13031395_13035824 chr2L - chr2L_13025498_13026528 chr2L_13025497_13025498;chr2L_13026528_13026529 chr2L_13025398_13025497;chr2L_13026529_13026720 0.00 0.00 0.00 5.71 3.45 4.17 6.06 5.88 2.78 0.00 5.88 4.17 7.69 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 3.70 1.64 0.00 0.00 0.00 4.44 5.68 0.00 0.00 0.00 NA 0.00 4.44 2.94 0.00 0.00 0.00 1.67 5.17 0.00 4.84 0.00 0.00 NA 0.00 0.00 0.00 5.48 0.00 0.00 0.00 0.00 0.00 6.45 0.00 0.00 6.67 K jcn_only_AD nudE chr3L + chr3L_9892456_9892825;chr3L_9892375_9892825 chr3L_9892498_9892825 chr3L_9892826_9893184;chr3L_9892344_9892374 0.00 NA NA 4.55 NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA 2.04 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_donor CG13602,I_chr3R_19753657_19753715 chr3R - chr3R_19753657_19753715;chr3R_19753657_19753717 chr3R_19753657_19753869 chr3R_19753602_19753656;chr3R_19753870_19754006 10.00 0.00 16.67 NA NA NA 0.00 16.67 0.00 NA NA 14.29 NA NA NA 16.67 NA NA NA 11.11 20.00 NA 0.00 0.00 NA NA NA NA NA 33.33 6.67 0.00 NA NA NA 0.00 NA 0.00 20.00 0.00 0.00 20.00 NA NA 16.67 11.11 10.00 20.00 12.50 NA 0.00 NA NA 14.29 0.00 0.00 25.00 0.00 K intron_retention CG8398 chr3L + chr3L_6609697_6609766 chr3L_6609696_6609697;chr3L_6609766_6609767 chr3L_6609178_6609696;chr3L_6609767_6610415 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG32532 chrX - chrX_19427304_19427668;chrX_19427304_19428023 chrX_19427304_19428011 chrX_19427087_19427303;chrX_19428024_19428129 10.00 NA NA 22.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention FI_chr2R_3251554_3255892,cos chr2R - chr2R_3273200_3273256 chr2R_3273199_3273200;chr2R_3273256_3273257 chr2R_3273063_3273199;chr2R_3273257_3273774 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 96.55 94.12 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 K jcn_only_AA CG13298,RI_chr3L_6186012_6186064 chr3L - chr3L_6185995_6186064 chr3L_6186012_6186064 chr3L_6186065_6186164;chr3L_6185912_6185994 1.34 0.78 1.98 2.04 0.00 3.45 3.17 2.70 0.54 3.23 0.00 1.63 5.17 1.59 2.30 4.80 4.55 0.00 2.13 1.34 2.08 0.86 0.53 0.54 3.64 0.00 1.21 0.00 0.86 0.93 0.00 0.85 1.24 1.31 1.56 0.00 0.65 1.48 0.98 1.54 0.00 2.38 1.64 2.01 1.14 1.71 0.59 1.46 2.37 1.97 1.04 1.15 1.00 0.00 3.08 2.96 0.98 1.36 K jcn_only_AD Nrg,I_chrX_8411470_8425729,RI_chrX_8411636_8425729,RI_chrX_8412432_8425557 chrX + chrX_8411454_8425729;chrX_8411543_8425729 chrX_8411668_8425729 chrX_8425730_8425829;chrX_8411428_8411453 12.50 NA NA 4.76 NA NA NA 10.00 12.50 NA NA 9.09 NA NA NA 31.03 NA NA NA 10.34 NA NA NA NA NA NA NA NA NA NA 12.50 NA 28.00 15.62 NA NA NA NA NA NA NA 8.33 NA NA NA NA NA 52.17 7.41 NA NA NA NA NA NA NA NA 40.91 K intron_retention CG1109,CG1347 chr3R + chr3R_1487531_1487587 chr3R_1487530_1487531;chr3R_1487587_1487588 chr3R_1487261_1487530;chr3R_1487588_1487739 0.00 0.00 2.22 6.94 0.00 0.00 0.00 2.04 0.00 0.00 0.00 2.63 0.00 3.03 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 1.20 0.00 4.88 0.00 2.63 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 1.67 K intron_retention CaMKI,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,RI_chr4_467374_467424,RI_chr4_467482_467543,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_467378_467446 chr4_467377_467378;chr4_467446_467447 chr4_467354_467377;chr4_467447_467481 30.43 NA NA 55.56 NA NA 34.62 24.00 22.22 NA NA 52.63 33.33 17.65 NA 23.33 NA NA 39.13 35.00 NA NA 38.46 NA NA 36.36 NA NA NA NA 34.78 NA NA 27.59 NA NA NA NA NA 12.50 NA 30.43 21.05 NA NA NA NA NA 27.50 NA 31.25 NA NA NA 25.00 NA 13.33 NA K jcn_only_AD Pk61C,CE_chr3L_129889_141769,I_chr3L_132531_133824,I_chr3L_133962_134014 chr3L + chr3L_132531_135457;chr3L_131934_135457;chr3L_131959_135457 chr3L_132056_135457 chr3L_135458_135842;chr3L_131849_131933 0.00 5.00 0.00 0.00 0.00 NA NA 6.82 0.00 NA NA 2.27 NA NA 2.56 NA NA NA 0.00 0.00 NA NA 0.00 NA NA 3.12 NA NA NA 0.00 NA NA 4.00 3.33 NA NA 0.00 NA 10.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K alternative_acceptor I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545686_17545855 chr2R_17545686_17545850 chr2R_17545628_17545685;chr2R_17545856_17545985 87.50 NA NA 87.50 NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 81.82 NA 88.89 NA NA 91.67 NA 87.50 85.71 NA NA NA NA 87.50 60.00 NA NA NA NA 90.00 100.00 NA K alternative_donor I_chr3L_7374787_7375310,smid,I_chr3L_7375166_7375310,I_chr3L_7375435_7375508 chr3L + chr3L_7375166_7375310;chr3L_7375255_7375310 chr3L_7375112_7375310 chr3L_7375311_7375410;chr3L_7375066_7375111 97.94 97.83 97.96 96.15 100.00 97.37 98.39 97.62 97.73 100.00 91.67 97.96 100.00 97.87 96.08 97.94 91.67 100.00 100.00 97.18 100.00 100.00 98.10 98.39 97.56 97.83 98.46 98.00 95.00 98.18 100.00 100.00 97.62 96.15 97.62 100.00 99.00 95.83 100.00 95.15 100.00 95.89 96.30 97.12 100.00 96.08 98.39 95.52 95.56 97.73 97.10 98.73 95.12 100.00 98.04 98.25 94.74 100.00 K intron_retention CG9471,CG12946,I_chr3R_5599701_5600032,I_chr3R_5609682_5609889 chr3R - chr3R_5597104_5597167 chr3R_5597103_5597104;chr3R_5597167_5597168 chr3R_5597018_5597103;chr3R_5597168_5597221 94.05 91.67 90.24 89.09 89.66 94.12 88.24 94.83 92.59 100.00 96.43 93.85 95.83 96.15 95.92 92.98 88.00 97.30 97.22 94.05 97.14 92.50 100.00 87.50 96.30 97.14 97.50 97.44 97.44 84.38 95.56 94.29 80.00 92.73 93.75 87.10 87.80 88.24 87.80 87.50 94.59 96.49 95.83 89.13 94.23 94.81 86.67 98.36 97.06 81.63 93.48 96.00 86.79 88.89 95.24 93.10 88.10 94.79 K jcn_only_AA CG7849 chr2R + chr2R_1964879_1964943 chr2R_1964879_1964927 chr2R_1964666_1964878;chr2R_1964944_1965538 100.00 95.65 NA NA 95.00 NA NA NA 96.30 NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 100.00 NA NA NA 96.30 NA 100.00 NA NA 95.24 NA NA 100.00 90.00 NA 100.00 95.83 NA NA 100.00 NA K multi_cassette DCAP,E_chr2R_6159586_6174578,I_chr2R_6164310_6172914,I_chr2R_6172307_6179999,I_chr2R_6178643_6181126,RI_chr2R_6183553_6192101,I_chr2R_6188094_6192101 chr2R + chr2R_6172307_6182116 chr2R_6172307_6179999;chr2R_6180378_6180845;chr2R_6180945_6182116 chr2R_6180000_6180377;chr2R_6180846_6180944 chr2R_6172207_6172306;chr2R_6182117_6182270 83.33 NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA 75.00 NA NA 100.00 NA NA 75.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 83.33 NA 80.00 NA NA 40.00 NA NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 75.00 NA 75.00 NA NA K intron_retention CG14619,I_chrX_21860097_21860199,RI_chrX_21860097_21868647,I_chrX_21865109_21865522,I_chrX_21869837_21869915 chrX + chrX_21860097_21864235 chrX_21860096_21860097;chrX_21864235_21864236 chrX_21859997_21860096;chrX_21864236_21864290 39.23 NA 77.78 29.17 NA NA 57.89 56.25 35.29 25.00 NA 47.62 NA NA 46.67 40.91 NA 45.45 41.67 33.33 NA 28.57 40.00 17.65 NA 14.29 35.71 NA NA 56.25 44.44 NA 18.75 43.75 NA 12.50 15.00 NA 13.04 22.22 NA 55.00 NA 29.41 NA NA NA NA 41.67 NA 38.46 NA NA NA 60.00 NA NA NA K jcn_only_AA Stat92E,I_chr3R_16365079_16365145,att-ORFB chr3R - chr3R_16365058_16365121 chr3R_16365079_16365121 chr3R_16365122_16365188;chr3R_16364979_16365057 64.87 65.04 67.17 66.76 73.47 61.39 64.44 63.13 67.54 62.39 68.84 63.92 61.09 62.79 71.18 64.87 68.42 64.92 69.83 62.55 68.02 61.24 62.30 64.58 51.91 64.91 65.18 62.63 66.95 65.56 64.23 70.71 69.23 67.22 57.75 59.51 65.29 63.57 67.32 62.93 62.22 66.82 65.71 76.63 68.38 55.84 62.65 67.09 63.70 61.82 51.55 55.70 60.94 66.29 65.50 62.90 64.07 73.72 K jcn_only_AD CG1024 chr3R - chr3R_2203902_2204191 chr3R_2203902_2204127 chr3R_2203688_2203901;chr3R_2204192_2205676 8.33 NA NA NA NA NA NA NA 17.39 NA NA 0.00 NA NA NA NA NA NA NA 8.33 NA NA NA NA NA NA NA NA NA NA NA NA NA 18.18 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA N intron_retention Hyperkinetic,RI_chrX_10148341_10148752,I_chrX_10148341_10149525,CG34319,noncoding_22888,I_chrX_10152994_10153223 chrX - chrX_10148427_10149525 chrX_10148426_10148427;chrX_10149525_10149526 chrX_10148036_10148426;chrX_10149526_10149619 80.56 NA NA NA NA NA 50.00 61.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA K intron_retention MAPk-Ak2,RI_chrX_5655618_5656137,I_chrX_5656715_5657974 chrX - chrX_5654854_5655201 chrX_5654853_5654854;chrX_5655201_5655202 chrX_5653941_5654853;chrX_5655202_5655617 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.54 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.37 0.76 0.00 0.00 0.00 0.00 0.76 0.00 0.00 K intron_retention mGluRA,I_chr4_959744_963392 chr4 + chr4_964300_964359 chr4_964299_964300;chr4_964359_964360 chr4_964174_964299;chr4_964360_964401 97.09 100.00 100.00 100.00 92.31 93.33 91.89 97.37 98.11 NA 93.33 100.00 100.00 95.83 94.44 100.00 100.00 94.12 96.00 93.94 93.33 92.86 95.65 100.00 93.33 100.00 100.00 92.31 92.86 93.33 96.00 100.00 100.00 97.83 93.75 100.00 90.00 100.00 93.33 95.45 100.00 97.44 100.00 87.50 100.00 97.22 100.00 100.00 89.74 100.00 95.00 100.00 93.75 100.00 95.83 100.00 96.97 96.67 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2389073;chrX_2389272_2389644;chrX_2389762_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2395659 chrX_2389074_2389271;chrX_2389645_2389761;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2395660_2395759 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K intron_retention Caf1-105,I_chr2R_6360956_6365128 chr2R - chr2R_6355302_6355360 chr2R_6355301_6355302;chr2R_6355360_6355361 chr2R_6353510_6355301;chr2R_6355361_6356061 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor sec23,I_chr3R_1474873_1475080,I_chr3R_1474899_1475080,I_chr3R_1474960_1475051,I_chr3R_1477727_1478102 chr3R + chr3R_1474960_1475080;chr3R_1474899_1475080 chr3R_1474873_1475080 chr3R_1475081_1475151;chr3R_1474860_1474872 0.00 3.33 2.56 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 1.33 0.00 2.70 0.00 1.27 2.70 0.00 0.00 0.00 0.00 0.00 0.00 2.44 4.17 2.63 0.00 3.23 0.00 0.00 2.44 0.00 0.00 1.45 0.00 4.00 0.00 0.00 0.00 2.63 0.00 1.28 0.00 0.00 7.69 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 K alternative_acceptor Flo-2 chrX + chrX_14819718_14820798 chrX_14819718_14820768 chrX_14819679_14819717;chrX_14820799_14820907 12.50 NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor rap,I_chrX_4570139_4570286 chrX - chrX_4568653_4570286 chrX_4570139_4570286 chrX_4570287_4570386;chrX_4568400_4568652 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Traf-like,I_chrX_16309561_16309689,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16310768_16310827 chrX_16310767_16310768;chrX_16310827_16310828 chrX_16310652_16310767;chrX_16310828_16311714 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.17 0.00 0.00 0.00 0.00 0.00 2.63 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive Fis1,I_chr2R_1491917_1491981,I_chr2R_1491917_1492087,I_chr2R_1492154_1492214 chr2R - chr2R_1491917_1492087,chr2R_1492156_1492214 chr2R_1491917_1491981,chr2R_1492022_1492214 chr2R_1492088_1492155 chr2R_1491982_1492021 chr2R_1491817_1491916;chr2R_1492215_1492311 71.43 NA NA 66.67 NA NA NA 71.43 71.43 NA NA 100.00 NA NA NA 66.67 NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 71.43 NA NA NA NA NA NA NA 66.67 NA K intron_retention eIF-4E,I_chr3L_9394468_9395446,I_chr3L_9394819_9395198,I_chr3L_9394819_9395379 chr3L - chr3L_9393619_9393682 chr3L_9393618_9393619;chr3L_9393682_9393683 chr3L_9393519_9393618;chr3L_9393683_9394053 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.45 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Stim chrX - chrX_15833274_15834432 chrX_15833274_15834256 chrX_15833070_15833273;chrX_15834433_15834462 4.55 NA NA 6.25 NA 3.70 1.45 3.23 4.48 NA NA 11.32 6.12 4.55 5.00 8.45 6.67 NA 1.82 1.75 NA 0.00 NA NA NA 2.70 NA NA NA NA 8.62 NA NA 5.97 NA NA NA NA NA NA NA 3.17 5.71 NA NA 9.68 NA 4.55 6.80 NA NA NA NA NA 2.63 NA NA 2.38 K intron_retention PP2A-B',RI_chr3R_13993929_13994503 chr3R + chr3R_13993517_13995378 chr3R_13993516_13993517;chr3R_13995378_13995379 chr3R_13993510_13993516;chr3R_13995379_13995820 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 98.63 100.00 100.00 100.00 100.00 96.43 100.00 97.78 96.00 100.00 100.00 98.28 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 97.22 100.00 100.00 100.00 100.00 98.04 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N intron_retention unc-5,E_chr2R_11238100_11240757,I_chr2R_11252444_11252570 chr2R + chr2R_11246255_11247482 chr2R_11246254_11246255;chr2R_11247482_11247483 chr2R_11246084_11246254;chr2R_11247483_11247526 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor bol,RI_chr3L_9117011_9118271 chr3L - chr3L_9117011_9118266;chr3L_9116901_9118266 chr3L_9116877_9118266 chr3L_9118267_9118272;chr3L_9116716_9116876 20.00 NA NA NA NA NA 25.00 NA 0.00 NA NA 25.00 0.00 NA NA 16.67 NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA 20.00 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21308996_21309994 chr2L_21309092_21309994 chr2L_21309995_21309997;chr2L_21308992_21308995 62.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 62.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Gap1 chr3L - chr3L_9834664_9835567 chr3L_9834663_9834664;chr3L_9835567_9835568 chr3L_9833612_9834663;chr3L_9835568_9835763 0.00 0.00 0.00 0.00 0.00 1.59 2.41 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive bbc,I_chr2R_9376554_9377246,REI_chr2R_9379401_9381986 chr2R - chr2R_9375638_9376421,chr2R_9376554_9378939;chr2R_9375638_9378244,chr2R_9378377_9378939 chr2R_9375638_9377246,chr2R_9377379_9378939 chr2R_9376422_9376553;chr2R_9378245_9378376 chr2R_9377247_9377378 chr2R_9375479_9375637;chr2R_9378940_9379098 1.62 0.90 1.81 3.03 2.40 1.99 3.07 3.03 2.87 0.58 1.69 2.89 5.41 3.52 1.81 8.38 3.39 1.69 3.60 2.13 2.44 2.29 1.89 1.43 1.81 1.38 1.04 1.32 1.52 1.45 1.43 1.33 1.61 4.35 1.36 1.81 1.45 0.46 0.77 1.20 0.84 1.62 3.19 1.23 0.36 0.64 0.80 0.86 3.68 1.64 1.12 2.10 0.56 1.20 1.65 0.92 1.00 0.67 K cassette ens,I_chr3L_4130719_4131120 chr3L - chr3L_4132213_4134453 chr3L_4132213_4133768;chr3L_4133823_4134453 chr3L_4133769_4133822 chr3L_4131956_4132212;chr3L_4134454_4134502 96.67 100.00 93.44 96.77 97.83 92.00 90.00 93.67 94.55 97.87 89.86 96.61 88.89 97.96 97.10 95.83 98.04 96.88 94.44 98.78 95.31 95.76 99.29 97.44 91.30 97.10 98.25 96.77 89.29 99.15 98.70 96.97 96.08 95.40 96.49 95.51 96.69 95.56 98.51 92.56 95.92 95.35 98.04 95.96 96.67 98.41 96.49 99.07 95.70 100.00 95.92 92.59 100.00 97.14 94.20 100.00 97.67 97.53 K intron_retention cher,I_chr3R_12927155_12927241,I_chr3R_12927155_12927867,I_chr3R_12927155_12927890,I_chr3R_12927279_12927890,I_chr3R_12943024_12948119 chr3R - chr3R_12927155_12929977 chr3R_12927154_12927155;chr3R_12929977_12929978 chr3R_12927074_12927154;chr3R_12929978_12930113 0.09 0.33 0.00 0.00 0.00 0.00 0.12 0.09 0.34 0.00 0.74 0.48 0.00 0.45 0.00 0.12 0.00 0.20 0.20 0.20 0.00 0.16 0.00 0.15 0.49 0.00 0.77 1.46 0.39 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.25 0.00 0.00 0.36 0.87 0.00 0.00 0.00 0.37 0.33 0.41 0.00 0.21 0.50 0.29 0.00 0.00 0.00 0.00 0.00 0.24 0.26 K cassette mld chr3R + chr3R_20445827_20446100 chr3R_20445827_20445894;chr3R_20445958_20446100 chr3R_20445895_20445957 chr3R_20441773_20445826;chr3R_20446101_20446835 81.82 66.67 100.00 90.91 100.00 77.78 66.67 60.87 66.67 NA NA 81.25 80.00 100.00 92.31 90.91 90.00 69.23 91.67 61.29 87.50 88.24 50.00 63.16 NA NA 88.89 100.00 55.56 62.50 NA 75.00 100.00 77.78 63.64 NA 80.95 92.86 81.25 91.67 NA 73.91 90.91 90.00 90.00 90.00 84.62 81.82 77.78 86.67 70.59 NA 100.00 75.00 100.00 75.00 NA NA K intron_retention I_chr2R_20828961_20829772,CG15861,CG2790,E_chr2R_20851190_20852094 chr2R - chr2R_20831289_20831345 chr2R_20831288_20831289;chr2R_20831345_20831346 chr2R_20830876_20831288;chr2R_20831346_20831456 28.57 22.22 38.46 47.62 42.31 28.57 41.82 35.29 35.19 40.00 34.48 28.07 35.29 33.33 38.10 32.50 43.75 36.36 26.67 33.78 40.00 18.09 23.26 24.49 25.81 35.29 36.73 26.67 32.65 18.75 35.14 14.71 26.92 28.21 28.57 40.54 26.67 20.69 18.87 22.73 26.47 34.88 30.77 28.85 30.00 18.75 22.00 21.43 44.12 22.45 25.00 19.05 33.33 19.57 33.33 27.27 20.93 19.51 K intron_retention dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21309092_21310000 chr2L_21309091_21309092;chr2L_21310000_21310001 chr2L_21308992_21309091;chr2L_21310001_21310009 95.74 100.00 100.00 93.33 90.00 NA 85.71 100.00 95.83 90.00 88.89 94.12 NA 88.89 100.00 94.12 100.00 100.00 100.00 95.24 NA 92.31 NA 100.00 NA 90.91 NA NA 90.00 100.00 90.91 NA 100.00 94.74 NA NA 100.00 100.00 NA 91.67 NA 100.00 100.00 NA NA 90.91 NA 95.83 95.65 NA 100.00 NA NA NA 90.00 NA NA 100.00 K alternative_donor Hr39,I_chr2L_21256047_21256260 chr2L + chr2L_21237385_21238280;chr2L_21237421_21238280;chr2L_21237364_21238280;chr2L_21237397_21238280;chr2L_21237405_21238280 chr2L_21237347_21238280 chr2L_21238281_21238529;chr2L_21237247_21237346 55.05 54.55 50.00 50.00 100.00 66.67 45.45 52.94 67.86 44.44 57.14 54.55 81.82 46.15 12.50 64.29 71.43 45.45 63.64 47.37 40.00 25.00 77.27 70.00 53.85 53.85 70.00 60.00 28.57 50.00 75.00 NA 18.18 50.00 56.25 45.45 NA 83.33 57.14 63.33 NA 75.00 50.00 76.47 50.00 77.78 50.00 55.56 58.33 62.50 63.64 75.00 50.00 NA 53.85 66.67 NA 50.00 K alternative_donor MAPk-Ak2,RI_chrX_5655618_5656137,I_chrX_5656715_5657427,I_chrX_5656715_5657893,I_chrX_5656715_5657974 chrX - chrX_5656715_5658141;chrX_5656715_5658101 chrX_5656715_5658126 chrX_5656615_5656714;chrX_5658142_5658214 83.93 87.50 84.21 82.19 87.76 80.00 83.95 83.15 81.97 89.74 79.07 80.65 94.74 80.00 83.02 87.50 83.72 84.44 79.25 82.11 78.95 84.31 86.36 82.76 86.05 83.33 71.93 78.79 60.00 78.79 80.95 72.22 75.00 81.16 87.10 80.95 88.52 86.00 84.48 86.36 78.26 82.00 85.37 83.93 84.00 77.55 86.00 83.87 81.61 85.00 88.46 86.54 86.11 86.49 85.71 87.76 85.11 85.71 K alternative_donor bon chr3R + chr3R_16433390_16433716 chr3R_16433396_16433716 chr3R_16433717_16433800;chr3R_16432003_16433389 46.67 47.83 41.67 39.13 35.71 69.23 46.15 53.33 50.00 42.86 NA 40.62 38.46 46.67 33.33 44.44 54.55 50.00 37.50 48.48 54.55 33.33 46.88 45.45 33.33 NA 52.17 43.75 60.00 45.00 NA 30.77 50.00 54.55 29.17 41.67 48.00 48.48 40.91 19.51 NA 65.22 60.00 50.00 60.00 30.77 40.00 53.33 42.31 64.71 42.86 58.33 47.37 33.33 53.33 46.67 NA NA N alternative_acceptor LanA,I_chr3L_6208090_6208194 chr3L - chr3L_6204579_6204825 chr3L_6204769_6204825 chr3L_6204826_6205054;chr3L_6204298_6204578 100.00 100.00 100.00 99.02 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention I_chr2L_258887_271628,mbm,CG17078 chr2L - chr2L_272507_272554 chr2L_272506_272507;chr2L_272554_272555 chr2L_271910_272506;chr2L_272555_273674 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 K intron_retention CG11122 chrX - chrX_11009564_11009630 chrX_11009563_11009564;chrX_11009630_11009631 chrX_11006491_11009563;chrX_11009631_11014872 0.00 0.00 NA 5.56 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 NA 5.08 0.00 0.00 10.53 NA 13.79 27.27 4.35 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 4.26 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 N intron_retention RpL5,I_chr2L_22427822_22428348,psnoRNA:RpL5-a,F_chr2L_22428392_22428525,I_chr2L_22428750_22428846 chr2L - chr2L_22427796_22428143 chr2L_22427795_22427796;chr2L_22428143_22428144 chr2L_22427722_22427795 100.00 NA NA 100.00 NA NA 61.11 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA 100.00 NA 40.62 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention RpS18,CG8908,EI_chr2R_16151918_16151997,I_chr2R_16151918_16152036,I_chr2R_16151938_16152065,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151918_16152036 chr2R_16151917_16151918;chr2R_16152036_16152037 chr2R_16151852_16151917;chr2R_16152037_16152066 99.96 99.95 99.89 100.00 99.97 100.00 100.00 99.98 99.99 99.91 99.97 99.98 99.97 99.94 99.93 99.90 99.91 100.00 99.92 99.99 99.97 99.96 99.92 99.96 99.96 99.98 99.98 99.96 99.97 99.96 99.97 99.90 99.86 99.96 99.96 99.93 99.97 99.90 99.94 99.87 99.93 99.95 100.00 99.97 99.98 99.93 99.98 99.96 99.98 99.95 99.95 99.96 99.92 99.95 99.96 99.93 99.94 99.91 K cassette RpL10Ab chr3L + chr3L_11815991_11816757 chr3L_11815991_11816299;chr3L_11816666_11816757 chr3L_11816300_11816665 chr3L_11815955_11815990;chr3L_11816758_11817314 99.90 99.93 99.46 97.59 99.80 99.91 99.93 99.48 99.84 99.91 99.67 99.70 99.89 100.00 99.76 99.78 99.89 99.53 99.90 99.61 99.77 97.38 100.00 100.00 100.00 99.31 100.00 99.86 99.89 100.00 99.72 99.93 99.90 99.75 100.00 99.89 100.00 100.00 99.95 99.79 99.86 99.70 99.64 99.96 99.85 99.96 99.93 99.96 99.76 99.94 100.00 100.00 99.96 100.00 99.79 100.00 100.00 99.96 K alternative_acceptor CG11448,I_chrX_1288748_1289115,RI_chrX_1289405_1289590 chrX + chrX_1288748_1289130 chrX_1288748_1289115 chrX_1288648_1288747;chrX_1289131_1289215 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 2.94 0.00 NA NA 0.00 6.67 0.00 3.33 NA 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention Hs2st,I_chr2L_19452794_19453250 chr2L - chr2L_19444428_19444492 chr2L_19444427_19444428;chr2L_19444492_19444493 chr2L_19444109_19444427;chr2L_19444493_19444784 0.00 3.23 0.00 0.00 3.70 4.17 0.00 0.00 6.25 NA 0.00 0.00 4.76 0.00 3.23 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 7.69 18.37 2.50 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 4.08 0.00 0.00 0.00 0.00 6.25 0.00 0.00 K intron_retention Myo61F,mtacp1,I_chr3L_1330291_1330865,I_chr3L_1330291_1331279,RI_chr3L_1330929_1331041,l(3)02640 chr3L + chr3L_1330291_1331279 chr3L_1330290_1330291;chr3L_1331279_1331280 chr3L_1330191_1330290;chr3L_1331280_1331379 100.00 100.00 100.00 NA 100.00 90.00 100.00 100.00 93.75 NA 100.00 93.33 100.00 90.00 100.00 100.00 NA NA NA 95.24 100.00 NA 92.31 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 91.67 100.00 NA 92.31 88.89 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA NA NA NA 100.00 NA K jcn_only_AA CG11006,F_chr3L_12799159_12799339 chr3L + chr3L_12799438_12799952;chr3L_12799438_12800192;chr3L_12799438_12800078;chr3L_12799438_12799967 chr3L_12799438_12799955 chr3L_12799340_12799437;chr3L_12800193_12800930 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 NA 3.70 0.00 0.00 0.00 NA NA 0.00 1.96 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 K alternative_donor MED22,I_chrX_822500_822582,noncoding_21259,I_chrX_829743_831973 chrX + chrX_822500_822582 chrX_822519_822582 chrX_822583_822649;chrX_822435_822499 100.00 100.00 94.44 100.00 94.74 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 NA 100.00 100.00 100.00 94.44 100.00 100.00 100.00 94.44 100.00 100.00 81.25 100.00 100.00 100.00 96.43 95.00 100.00 100.00 100.00 96.55 100.00 100.00 93.75 100.00 100.00 100.00 95.65 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention cic chr3R + chr3R_16125875_16125938 chr3R_16125874_16125875;chr3R_16125938_16125939 chr3R_16125690_16125874;chr3R_16125939_16126134 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.87 0.00 0.00 0.00 4.69 5.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.99 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention BM-40-SPARC,I_chr3R_22696095_22696231,I_chr3R_22696095_22696291,I_chr3R_22696095_22697413 chr3R - chr3R_22696095_22696231 chr3R_22696094_22696095;chr3R_22696231_22696232 chr3R_22695995_22696094;chr3R_22696232_22696331 100.00 NA 90.00 100.00 NA 100.00 100.00 94.12 100.00 NA NA 94.44 100.00 100.00 100.00 100.00 NA NA 100.00 96.30 88.89 100.00 91.67 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA NA 92.31 NA 100.00 NA NA NA 88.89 90.91 100.00 100.00 NA 87.50 100.00 NA 100.00 100.00 NA 88.89 NA NA NA 92.86 NA 100.00 100.00 K intron_retention gwl chr3R + chr3R_14574012_14574082 chr3R_14574011_14574012;chr3R_14574082_14574083 chr3R_14573853_14574011;chr3R_14574083_14574211 30.77 NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.53 NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Dyb,I_chr2R_8338101_8339173,I_chr2R_8348603_8351844 chr2R + chr2R_8324915_8335263 chr2R_8325396_8335263 chr2R_8335264_8335605;chr2R_8324876_8324914 95.24 100.00 NA 93.55 NA 95.83 96.00 100.00 97.83 86.67 NA 83.87 NA 100.00 100.00 95.83 NA NA NA 97.30 NA 84.62 88.46 NA NA 95.65 85.71 NA NA 90.91 100.00 NA 86.67 96.43 NA 100.00 93.10 NA 91.30 89.19 NA 87.88 NA 97.14 NA NA NA 90.00 95.24 NA NA 91.67 NA NA 92.31 NA NA 96.30 K jcn_only_AA CG32264,CG10858,noncoding_10446,RI_chr3L_3759259_3765642,RI_chr3L_3769407_3803313 chr3L - chr3L_3723873_3767136 chr3L_3754063_3767136 chr3L_3767137_3767245 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.69 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907784_9908531;chr2L_9907784_9908307;chr2L_9907784_9908405 chr2L_9907784_9908424 chr2L_9907756_9907783;chr2L_9908532_9908619 77.12 85.00 76.60 83.70 71.05 75.00 73.13 83.33 71.78 NA 82.35 76.00 67.39 78.12 81.25 77.78 83.33 75.38 81.48 74.63 79.49 65.22 80.53 78.38 83.02 83.93 76.09 79.41 73.21 77.46 68.52 86.67 84.51 80.00 68.66 77.55 70.00 77.42 76.81 76.47 74.29 83.06 73.17 65.88 70.00 74.60 67.27 71.88 82.83 72.22 79.57 82.00 72.55 71.43 81.71 75.51 82.86 82.00 K jcn_only_AA CG10171 chr3L - chr3L_13380699_13380765 chr3L_13380711_13380765 chr3L_13380766_13380916;chr3L_13379701_13380698 7.04 16.67 4.08 15.09 NA 2.33 9.52 8.51 10.34 7.14 9.09 7.61 3.70 10.71 4.00 7.89 0.00 2.38 0.00 7.37 10.00 4.11 10.91 6.38 6.67 9.68 6.52 7.14 9.26 5.88 8.70 9.09 10.31 7.55 3.77 12.20 0.00 10.53 3.17 5.19 2.70 6.67 8.70 5.13 6.06 5.13 14.52 4.41 7.04 0.00 12.96 NA 0.00 0.00 7.14 8.00 5.41 5.77 K jcn_only_AA CG6962 chr3R - chr3R_7705797_7705859 chr3R_7705805_7705859 chr3R_7705860_7706117;chr3R_7705437_7705796 100.00 100.00 100.00 97.67 95.24 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 98.00 95.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 NA NA NA NA 100.00 100.00 NA 98.00 NA NA NA 95.45 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA K intron_retention Elp3 chr2L + chr2L_4446059_4446111 chr2L_4446058_4446059;chr2L_4446111_4446112 chr2L_4445193_4446058;chr2L_4446112_4446765 16.67 7.41 17.86 13.79 6.67 9.52 13.79 22.58 19.15 NA 5.56 13.16 16.67 28.57 20.00 30.43 17.65 NA 21.74 23.26 17.65 8.57 5.71 0.00 10.00 12.00 8.33 20.00 16.67 19.05 26.09 28.57 20.00 19.35 9.09 11.76 0.00 16.67 6.67 35.90 17.65 14.81 7.69 21.43 19.23 29.17 0.00 64.29 23.81 5.88 9.30 7.69 0.00 9.68 20.00 13.04 7.27 31.82 K jcn_only_AA I_chr2L_822032_822857,dock chr2L + chr2L_826508_829304;chr2L_826508_829456 chr2L_826508_829421 chr2L_826008_826507;chr2L_829457_829468 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention spen,I_chr2L_187184_187481,I_chr2L_200676_200752 chr2L + chr2L_200676_200741 chr2L_200675_200676;chr2L_200741_200742 chr2L_200576_200675;chr2L_200742_201061 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG2219,I_chr4_199813_199889,RI_chr4_202143_202194 chr4 - chr4_199838_199889;chr4_199822_199889 chr4_199813_199889 chr4_199890_199942;chr4_199758_199812 0.00 0.00 1.67 1.90 0.00 0.00 0.61 1.04 0.59 0.00 2.44 1.00 1.41 0.00 0.00 0.79 1.41 0.00 0.00 1.23 2.94 0.00 0.97 1.15 0.00 3.70 1.16 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 2.27 4.00 0.00 0.00 3.33 1.25 0.00 0.00 0.76 0.94 0.00 0.00 0.00 0.00 1.45 0.00 1.03 0.00 K intron_retention yps,I_chr3L_12115255_12115627,RI_chr3L_12115255_12115645,I_chr3L_12115255_12115669,E_chr3L_12115874_12116660,I_chr3L_12115877_12115936 chr3L - chr3L_12115255_12115775 chr3L_12115254_12115255;chr3L_12115775_12115776 chr3L_12115155_12115254;chr3L_12115776_12115867 6.82 4.89 6.59 4.35 7.38 6.55 4.79 8.27 6.35 8.81 10.69 5.54 8.94 8.89 6.60 6.56 5.13 8.89 6.61 5.19 5.92 21.83 6.81 6.31 10.00 3.90 7.10 17.50 26.11 5.48 5.00 8.37 6.38 8.07 6.92 5.92 6.17 8.48 8.65 9.04 7.73 6.23 7.50 9.17 5.07 10.21 8.63 12.89 5.93 6.82 8.47 7.91 5.72 5.79 5.58 6.63 6.90 7.42 K intron_retention CG4699 chr3R + chr3R_11622614_11623019 chr3R_11622613_11622614;chr3R_11623019_11623020 chr3R_11621368_11622613;chr3R_11623020_11623516 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD coro,I_chr2R_2752880_2760038,I_chr2R_2754447_2754986,I_chr2R_2754447_2755071 chr2R - chr2R_2754447_2760059 chr2R_2754447_2760038 chr2R_2754347_2754446;chr2R_2760060_2760138 94.32 95.74 92.79 92.02 95.15 91.11 96.43 93.68 94.10 93.55 95.70 92.61 94.32 96.63 94.41 96.53 95.74 92.73 96.88 93.62 95.24 94.87 91.43 94.04 93.27 92.86 96.69 94.63 90.98 97.30 94.96 96.08 93.64 93.53 91.73 90.17 93.81 93.87 91.10 96.47 97.98 93.77 95.74 93.70 91.22 97.87 96.12 97.51 95.16 94.38 93.46 90.22 95.96 95.06 95.03 93.64 93.94 95.31 K intron_retention Adar,I_chrX_1668256_1682696,I_chrX_1674594_1674717 chrX + chrX_1674859_1675750 chrX_1674858_1674859;chrX_1675750_1675751 chrX_1674718_1674858;chrX_1675751_1675798 53.13 52.94 37.50 38.24 29.41 NA 57.14 61.54 57.14 NA 30.77 57.69 90.91 50.00 53.33 51.72 43.75 36.36 56.25 60.61 NA NA 59.09 44.44 60.00 NA 56.25 NA NA 40.00 37.50 57.14 NA 50.00 84.62 31.58 37.50 50.00 66.67 55.00 41.67 53.85 54.55 42.86 NA 44.44 60.00 35.29 53.33 68.75 62.07 50.00 46.15 66.67 71.43 52.63 47.37 61.11 K intron_retention I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10066547_10066613 chr2R_10066546_10066547;chr2R_10066613_10066614 chr2R_10066399_10066546;chr2R_10066614_10066759 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11870,I_chr3R_6124314_6124732 chr3R + chr3R_6124314_6125355 chr3R_6124313_6124314;chr3R_6125355_6125356 chr3R_6124214_6124313;chr3R_6125356_6125474 0.00 0.00 0.00 5.00 NA 0.00 NA NA 7.14 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 NA 3.77 0.00 0.00 0.00 NA 0.00 NA 0.00 6.45 NA 0.00 0.00 0.00 0.00 3.33 4.55 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 3.03 NA 0.00 0.00 0.00 K intron_retention wge chr3R - chr3R_18545740_18545800 chr3R_18545739_18545740;chr3R_18545800_18545801 chr3R_18545593_18545739;chr3R_18545801_18546088 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 3.45 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 1.54 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 5.26 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 8.00 K jcn_only_AA Pabp2,I_chr2R_4020297_4020426 chr2R + chr2R_4020297_4020446 chr2R_4020297_4020426 chr2R_4020197_4020296;chr2R_4020447_4020526 0.00 0.60 0.00 0.00 0.00 0.00 0.88 0.61 0.86 0.00 0.00 0.00 0.00 1.80 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 1.62 0.45 0.00 1.67 0.57 0.00 1.72 0.00 0.78 0.00 0.00 0.54 0.68 0.00 0.68 0.00 0.90 0.30 2.10 0.00 0.00 0.83 0.00 0.52 0.00 1.02 0.00 0.00 0.00 0.00 0.61 0.64 0.00 0.00 0.00 0.00 K intron_retention CG14642,CG34305 chr3R - chr3R_67996_68059 chr3R_67995_67996;chr3R_68059_68060 chr3R_67897_67995;chr3R_68060_68508 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 12.50 NA 0.00 6.67 NA NA NA NA NA NA 0.00 0.00 NA 0.00 9.09 NA NA 21.43 NA NA 2.38 NA 7.69 NA 0.00 0.00 2.94 NA 10.34 10.00 8.70 0.00 NA NA 0.00 12.50 0.00 NA 0.00 K alternative_acceptor MB8.chr3R.pasa.66,ref1,RI_chr3R_2904130_2904237,RI_chr3R_2904305_2904543,I_chr3R_2904452_2904543 chr3R - chr3R_2904130_2904543;chr3R_2904452_2904543 chr3R_2904305_2904543 chr3R_2904544_2904643;chr3R_2904030_2904129 2.50 2.40 1.52 6.94 2.80 1.80 0.78 3.03 2.72 2.50 3.92 4.37 7.50 1.10 2.53 6.49 1.00 0.93 4.76 1.91 1.72 4.17 2.61 1.48 2.25 5.19 4.00 5.95 1.98 3.39 3.12 2.46 1.90 2.65 2.13 3.14 1.18 1.54 1.98 3.86 3.26 2.78 3.70 2.37 1.15 2.71 2.18 3.52 2.63 4.04 4.00 2.46 1.21 1.28 1.35 1.63 1.64 1.42 K alternative_donor CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4837672_4837772 chr3R_4837672_4837766 chr3R_4837396_4837671;chr3R_4837773_4837866 95.24 94.59 97.92 93.33 92.45 94.23 92.16 97.96 95.83 97.14 90.24 96.12 93.33 100.00 91.11 96.67 95.83 94.44 96.43 94.24 96.67 95.58 92.11 95.92 95.45 96.88 95.60 90.67 96.67 94.29 93.75 95.00 95.77 93.44 98.31 95.38 94.87 93.55 93.71 95.87 98.41 94.06 96.97 92.00 91.79 96.00 96.90 94.94 93.26 96.52 95.24 91.11 92.94 94.37 95.92 92.22 96.00 95.56 K cassette enc chr3L + chr3L_3818921_3831720 chr3L_3818921_3829418;chr3L_3829862_3831720 chr3L_3829419_3829861 chr3L_3818852_3818920;chr3L_3831721_3832393 100.00 100.00 100.00 96.20 100.00 98.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.28 100.00 100.00 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.12 100.00 100.00 100.00 100.00 100.00 100.00 99.08 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention mod(mdg4) chr3R - chr3R_17202464_17202540 chr3R_17202463_17202464;chr3R_17202540_17202541 chr3R_17202324_17202463;chr3R_17202541_17202798 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.49 0.65 0.66 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 K intron_retention su(r),I_chrX_9094230_9095181 chrX - chrX_9094107_9094165 chrX_9094106_9094107;chrX_9094165_9094166 chrX_9091302_9094106;chrX_9094166_9094229 0.65 0.00 0.00 3.18 0.73 1.00 2.30 1.57 1.31 0.00 0.55 0.26 1.35 2.21 0.93 0.45 0.00 1.66 0.51 1.01 0.56 4.89 0.30 0.00 0.65 0.55 2.33 1.71 15.15 1.68 1.00 0.00 1.38 2.14 0.61 1.10 0.00 0.00 0.00 1.42 2.86 1.08 1.85 0.00 0.00 1.61 0.00 0.62 1.46 1.19 0.40 0.00 0.00 0.00 0.94 0.60 0.49 0.64 K alternative_donor CG10103,noncoding_10997 chr3L - chr3L_6747908_6748172 chr3L_6747908_6748046 chr3L_6747845_6747907;chr3L_6748173_6748223 78.89 100.00 77.78 70.00 42.86 66.67 100.00 69.23 66.67 92.31 43.75 77.27 100.00 62.50 66.67 91.67 85.71 85.71 58.82 80.95 69.23 100.00 73.33 71.43 88.89 94.44 94.74 95.00 90.91 88.89 92.31 73.33 63.64 76.47 75.00 100.00 90.00 71.43 80.00 80.00 86.49 81.82 71.43 84.62 81.25 70.83 77.78 64.00 93.33 83.33 92.31 NA 55.56 87.50 50.00 66.67 66.67 71.43 K intron_retention Pfk,I_chr2R_5999081_6000140,E_chr2R_6001157_6001630 chr2R + chr2R_6000676_6001047 chr2R_6000675_6000676;chr2R_6001047_6001048 chr2R_6000521_6000675;chr2R_6001048_6001156 4.88 7.84 6.25 13.04 13.04 14.29 10.00 8.33 10.00 0.00 0.00 6.45 NA 0.00 13.79 0.00 9.09 0.00 7.14 4.11 3.70 0.00 4.65 1.49 7.55 4.00 8.97 18.52 4.08 2.44 8.51 NA 0.00 9.52 8.11 4.17 3.67 9.26 6.02 8.77 NA 5.00 7.69 3.51 0.00 0.00 0.00 NA 4.76 0.00 8.11 7.69 0.00 0.00 10.71 0.00 0.00 NA K alternative_last_exon lqfR,I_chr3R_18240000_18243534,I_chr3R_18243588_18243830 chr3R + chr3R_18240000_18243830 chr3R_18240000_18240264 chr3R_18243831_18247324 chr3R_18240265_18243526 chr3R_18239900_18239999 7.14 6.04 6.92 3.91 7.37 7.69 4.76 6.03 7.17 8.79 6.32 6.03 8.24 9.09 8.15 11.43 8.16 7.62 7.44 6.10 6.80 10.17 8.10 7.07 6.60 5.71 8.38 9.29 7.00 8.40 9.26 5.93 12.67 8.65 7.27 7.76 6.56 6.37 6.22 8.65 6.36 7.14 7.77 7.05 8.21 5.79 7.24 10.66 6.77 5.15 6.64 9.09 2.79 4.86 7.43 5.26 2.83 3.40 K intron_retention Kdm4B,seq chr2R - chr2R_9074428_9074485 chr2R_9074427_9074428;chr2R_9074485_9074486 chr2R_9074255_9074427;chr2R_9074486_9074821 0.00 7.14 5.56 13.64 0.00 0.00 9.38 4.44 5.97 6.25 0.00 3.28 0.00 0.00 8.57 5.56 0.00 8.33 0.00 8.77 0.00 33.33 0.00 2.33 0.00 21.74 2.56 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 9.52 5.71 7.41 0.00 0.00 NA 4.00 0.00 0.00 NA 0.00 0.00 0.00 8.16 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 K cassette CG7337,I_chr2L_1938620_1938887,I_chr2L_1942183_1942233 chr2L + chr2L_1938620_1941581 chr2L_1938620_1938864;chr2L_1941394_1941581 chr2L_1938865_1941393 chr2L_1938520_1938619;chr2L_1941582_1941677 9.30 33.33 8.33 9.52 10.00 0.00 9.09 4.00 8.33 0.00 7.69 15.00 7.69 16.67 4.35 14.29 0.00 10.00 16.67 9.09 8.33 7.69 10.00 12.50 25.00 12.50 12.50 14.29 8.33 12.50 6.67 NA 20.00 5.26 20.00 12.50 10.00 NA 10.00 3.85 7.69 7.41 10.00 10.00 0.00 0.00 NA 3.45 4.35 14.29 12.50 NA NA NA 7.14 NA 20.00 0.00 K jcn_only_AD CG11334,I_chr3R_27286879_27286943,I_chr3R_27286879_27287189,I_chr3R_27287691_27288117,F_chr3R_27287720_27288551 chr3R - chr3R_27286879_27287535 chr3R_27286879_27286943 chr3R_27286779_27286878;chr3R_27287536_27287684 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.93 0.00 0.00 0.52 0.00 0.00 1.55 0.76 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.66 K alternative_acceptor pxb,I_chr3R_11504971_11505107 chr3R + chr3R_11504971_11510791 chr3R_11504971_11505107 chr3R_11504871_11504970;chr3R_11510792_11511026 4.35 7.69 5.00 0.00 5.56 10.00 3.45 3.85 5.71 0.00 18.18 10.00 0.00 8.33 5.00 3.57 5.56 4.35 7.69 5.88 6.67 2.78 3.23 3.23 0.00 0.00 6.67 10.53 4.76 0.00 4.17 10.00 0.00 4.17 0.00 0.00 5.00 7.69 3.45 3.33 5.00 3.03 0.00 4.00 5.26 2.86 7.14 3.23 2.94 0.00 3.33 5.56 5.00 4.55 4.35 5.56 4.76 8.70 K jcn_only_AD R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8088517_8089184;chr2L_8088454_8089184 chr2L_8088371_8089184 chr2L_8089185_8089284;chr2L_8088362_8088370 1.20 NA 2.78 10.00 NA NA 4.08 2.04 3.92 NA NA 0.00 2.50 3.12 0.00 0.93 NA 0.00 4.65 1.20 0.00 NA 0.00 NA 4.55 0.00 NA NA NA NA 0.00 NA 13.64 4.11 0.00 2.17 NA NA NA 0.00 0.00 3.33 10.00 4.55 NA 0.00 NA NA 1.06 NA 0.00 NA 0.00 NA 7.14 0.00 NA NA K intron_retention CG5953 chr2L - chr2L_16511447_16527389 chr2L_16511446_16511447;chr2L_16527389_16527390 chr2L_16508652_16511446;chr2L_16527390_16528243 4.17 0.00 0.00 2.74 0.00 3.39 2.20 7.46 2.31 0.00 9.52 4.10 3.12 4.17 2.53 2.00 7.14 4.76 4.08 2.59 0.00 5.00 6.45 5.00 5.00 1.41 4.88 14.58 2.47 5.26 1.43 2.27 7.14 6.74 10.87 1.54 6.67 0.00 7.53 5.32 6.52 2.48 4.17 5.13 0.00 5.08 6.25 6.14 5.08 4.44 5.62 4.88 0.00 8.82 2.74 0.00 4.55 0.00 K intron_retention LSm7 chr2L - chr2L_16742443_16742625 chr2L_16742442_16742443;chr2L_16742625_16742626 chr2L_16742326_16742442;chr2L_16742626_16742986 50.22 48.70 53.15 52.82 52.27 51.61 45.78 63.54 51.32 16.92 47.37 46.57 19.44 64.08 52.68 58.58 58.75 43.64 48.48 43.85 49.38 41.67 50.00 46.09 54.67 59.82 49.56 49.50 74.12 46.88 56.92 57.33 55.81 50.52 41.79 76.67 41.88 46.15 42.36 50.46 70.34 53.40 53.61 54.00 59.76 60.51 38.57 76.47 50.22 47.66 42.15 57.65 47.57 35.56 49.65 45.59 48.56 75.42 K alternative_acceptor CG42307 chr3L + chr3L_7324437_7324504 chr3L_7324437_7324492 chr3L_7324397_7324436;chr3L_7324505_7326483 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor Khc-73 chr2R - chr2R_11409610_11410378 chr2R_11409634_11410378 chr2R_11410379_11410524;chr2R_11409507_11409609 10.81 5.56 13.16 24.07 12.00 10.71 6.52 13.04 11.90 11.11 13.04 9.09 33.33 7.69 11.63 10.71 9.09 13.79 19.23 11.84 16.00 7.27 9.09 10.26 24.24 28.00 6.90 10.26 7.27 10.00 10.81 12.00 12.82 14.29 11.11 41.67 14.71 10.26 12.07 9.38 21.43 11.94 3.85 10.20 6.90 9.09 3.12 11.59 13.21 7.69 12.50 10.81 9.09 9.09 6.67 9.09 7.69 9.30 K alternative_last_exon nahoda,I_chr2R_18802176_18802967 chr2R + chr2R_18801872_18802967 chr2R_18801872_18802042 chr2R_18802968_18804341 chr2R_18802043_18802373 chr2R_18801702_18801871 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 25.00 0.00 25.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 20.00 0.00 0.00 0.00 0.00 0.00 20.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 K alternative_acceptor Smox,I_chrX_8034946_8035668,RI_chrX_8034951_8035014,I_chrX_8034951_8035569,I_chrX_8035142_8035238 chrX - chrX_8034946_8035668 chrX_8034951_8035668 chrX_8035669_8035669;chrX_8034851_8034945 95.56 96.55 95.56 94.44 90.62 94.12 91.67 95.65 96.43 100.00 94.74 94.44 100.00 96.97 91.07 96.43 90.91 92.50 89.19 97.70 93.02 96.72 94.87 96.55 96.00 92.31 97.06 92.50 92.31 96.55 95.24 95.65 95.45 97.01 94.44 95.00 98.28 96.88 92.86 95.24 96.30 96.97 94.74 97.87 95.65 97.22 95.83 93.16 88.24 95.00 96.43 96.43 100.00 88.89 97.78 94.74 93.75 96.49 K intron_retention su(r),I_chrX_9094230_9095181 chrX - chrX_9091012_9091085 chrX_9091011_9091012;chrX_9091085_9091086 chrX_9090839_9091011;chrX_9091086_9091243 0.58 0.00 0.00 0.82 0.71 0.00 0.71 1.50 1.06 0.00 0.70 0.27 1.08 0.48 1.33 0.98 0.00 0.00 0.41 0.00 0.00 0.00 0.84 0.81 0.73 0.00 0.81 3.08 1.64 0.96 0.00 0.00 0.53 0.97 0.70 0.00 1.87 0.00 0.00 1.16 0.68 0.25 0.00 0.00 0.00 0.81 0.68 0.00 0.00 0.93 0.36 0.58 1.02 0.33 0.00 0.94 1.09 0.87 K intron_retention cryptocephal,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21312044_21312097 chr2L_21312043_21312044;chr2L_21312097_21312098 chr2L_21311984_21312043;chr2L_21312098_21312208 0.44 0.26 0.51 0.77 0.35 0.62 1.21 0.33 0.68 0.26 0.00 0.64 1.03 0.30 0.54 0.54 0.75 0.00 1.05 0.27 0.00 0.89 0.66 0.28 2.46 1.79 2.09 2.10 3.41 0.83 0.61 0.96 0.52 0.88 0.00 4.38 0.15 0.00 0.16 0.20 2.63 0.28 0.00 0.36 0.00 0.45 0.21 0.00 0.21 0.76 0.29 0.44 0.35 0.25 0.00 0.30 0.70 0.00 K alternative_acceptor CG32809,I_chrX_1576304_1577129,I_chrX_1576463_1577129,I_chrX_1576815_1577129,I_chrX_1577031_1577129,CEI_chrX_1579569_1579679,RI_chrX_1585391_1586471,I_chrX_1589508_1589564 chrX - chrX_1576962_1577129 chrX_1577031_1577129 chrX_1577130_1577229;chrX_1576949_1576961 15.48 7.14 NA NA NA NA NA NA 12.50 NA NA 33.33 NA NA NA 20.00 NA NA NA 12.50 16.67 50.00 NA 20.00 NA NA NA NA NA NA 17.65 NA NA NA NA NA 11.11 NA 14.29 NA NA 5.26 NA NA NA NA NA NA 6.67 27.27 NA NA NA NA NA NA NA NA K alternative_donor CG2091,sec8 chr3R - chr3R_1579962_1580025 chr3R_1579962_1580022 chr3R_1579073_1579961;chr3R_1580026_1580169 100.00 NA 88.89 90.00 NA NA NA 100.00 100.00 NA 100.00 91.67 NA 100.00 NA 91.67 87.50 87.50 100.00 93.75 NA 100.00 90.91 NA NA 100.00 NA NA NA NA 88.89 100.00 100.00 100.00 NA 100.00 NA NA NA 90.91 100.00 92.31 100.00 NA 100.00 100.00 100.00 91.67 92.31 100.00 100.00 91.67 NA NA NA 100.00 NA 100.00 K alternative_donor phtf,I_chr2R_2629598_2630209 chr2R + chr2R_2632042_2632103 chr2R_2632045_2632103 chr2R_2632104_2632282;chr2R_2631158_2632041 100.00 100.00 100.00 100.00 NA 100.00 88.89 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 90.00 100.00 100.00 100.00 90.91 100.00 94.12 NA 93.75 100.00 100.00 100.00 100.00 100.00 100.00 94.12 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention veg,I_chr2R_12845291_12845765 chr2R + chr2R_12843067_12843137 chr2R_12843066_12843067;chr2R_12843137_12843138 chr2R_12843055_12843066;chr2R_12843138_12843182 93.75 NA 100.00 94.74 77.78 100.00 94.44 83.33 95.24 NA NA 89.29 NA 92.31 85.71 95.65 92.31 100.00 100.00 95.65 100.00 93.75 91.67 NA NA 92.31 88.89 NA NA 88.89 94.74 NA 91.67 90.91 100.00 90.91 81.82 NA 100.00 96.15 88.89 95.00 92.31 90.91 87.50 100.00 NA 100.00 100.00 NA 92.31 100.00 90.00 NA 91.67 NA 100.00 100.00 K intron_retention CG14778 chrX + chrX_1363987_1364047 chrX_1363986_1363987;chrX_1364047_1364048 chrX_1363838_1363986;chrX_1364048_1364130 81.82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 81.82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG17646,E_chr2L_1749256_1749517 chr2L + chr2L_1745162_1745220 chr2L_1745161_1745162;chr2L_1745220_1745221 chr2L_1744979_1745161;chr2L_1745221_1745287 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 16.67 6.67 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 0.00 0.00 NA 5.56 NA 0.00 0.00 NA 0.00 14.29 NA 0.00 0.00 NA NA 0.00 NA NA NA NA K alternative_acceptor mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818607_7818970;chr3R_7818575_7818970 chr3R_7818597_7818970 chr3R_7818971_7818995;chr3R_7818507_7818574 28.67 29.59 29.00 26.42 31.96 23.88 23.30 25.27 30.80 31.25 32.53 29.34 29.03 30.39 30.00 27.27 29.51 25.00 23.14 28.07 35.06 22.66 28.75 26.32 27.78 27.18 38.75 27.42 29.27 29.41 31.46 19.51 21.25 28.85 16.67 37.14 27.27 32.35 18.18 28.67 28.00 28.18 31.18 29.33 18.03 33.75 31.48 21.82 30.65 29.73 31.11 26.87 27.59 29.17 27.78 28.07 23.81 20.21 K alternative_donor CG17912,I_chr2L_16749189_16749266 chr2L + chr2L_16743565_16743759 chr2L_16743571_16743759 chr2L_16743760_16744067;chr2L_16743436_16743564 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.48 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 97.06 98.78 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG11255 chr3L - chr3L_13013927_13014173 chr3L_13013926_13013927;chr3L_13014173_13014174 chr3L_13013028_13013926;chr3L_13014174_13014657 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention NiPp1 chr2R - chr2R_12892203_12892257 chr2R_12892202_12892203;chr2R_12892257_12892258 chr2R_12891988_12892202;chr2R_12892258_12892472 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 8.33 0.00 NA 0.00 11.76 NA 10.53 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 4.76 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11414 chr2R + chr2R_20450493_20450549 chr2R_20450492_20450493;chr2R_20450549_20450550 chr2R_20449929_20450492;chr2R_20450550_20451768 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG15738,RI_chrX_11786544_11786762 chrX + chrX_11786437_11786762 chrX_11786544_11786762 chrX_11786763_11786862;chrX_11786322_11786436 0.93 0.00 0.00 0.00 NA 4.55 3.45 0.00 2.33 12.50 0.00 4.44 0.00 0.00 6.67 0.00 NA 15.00 0.00 1.96 0.00 4.44 2.27 0.00 0.00 0.00 0.00 8.70 17.14 3.45 5.56 0.00 3.39 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 2.70 NA 3.45 2.13 2.00 3.23 2.22 0.00 1.85 8.82 0.00 2.38 5.26 0.00 0.00 4.35 0.00 K jcn_only_AA Usp7,I_chrX_11919055_11919146,I_chrX_11922059_11922456 chrX - chrX_11919079_11919146;chrX_11919055_11919146 chrX_11919091_11919146 chrX_11919147_11919211;chrX_11918989_11919054 78.89 90.52 79.19 81.47 78.90 76.99 70.59 80.15 81.63 76.47 78.89 76.29 78.99 79.28 81.77 78.57 77.48 76.92 76.57 74.29 81.31 70.77 94.41 75.97 70.59 75.69 86.67 88.75 69.14 82.14 76.92 77.78 80.43 85.50 75.51 67.65 82.79 77.32 83.70 80.13 63.83 79.88 79.67 84.29 77.50 78.83 79.85 69.84 76.95 86.17 80.99 80.77 77.59 78.75 81.72 78.82 80.62 72.03 K alternative_donor I_chr2L_8029734_8029787,Cka,CG7429 chr2L + chr2L_8031338_8032059;chr2L_8031163_8032059;chr2L_8031036_8032059;chr2L_8031309_8032059 chr2L_8030840_8032059 chr2L_8032060_8032641;chr2L_8030749_8030839 86.36 67.65 86.49 85.47 89.74 87.72 80.31 83.06 88.43 85.90 91.00 84.17 88.89 83.82 80.26 83.72 88.57 84.38 84.81 92.18 87.64 88.89 91.28 85.44 86.76 81.08 81.37 85.37 83.75 90.74 84.42 86.54 81.03 82.18 86.89 83.33 93.26 41.67 88.99 87.88 84.38 81.68 79.63 88.89 92.54 87.10 94.83 90.54 81.90 91.43 89.83 83.61 92.11 91.04 85.11 86.36 87.67 82.61 K alternative_donor CG2246,I_chr3R_26421344_26425985,RI_chr3R_26421349_26425985,I_chr3R_26421349_26427017,noncoding_20201 chr3R - chr3R_26421349_26427138 chr3R_26421349_26426922 chr3R_26421249_26421348;chr3R_26427139_26427178 8.33 NA 7.14 15.38 NA NA 16.67 14.29 14.29 NA NA 9.52 8.33 NA NA 11.11 NA NA 8.33 10.71 NA NA 0.00 18.18 11.11 NA 20.00 NA 8.33 NA NA 0.00 10.00 NA NA 6.25 NA NA 5.88 12.50 10.00 6.67 NA 5.26 NA 5.00 9.09 3.45 14.29 0.00 4.76 NA 0.00 NA NA 7.69 0.00 10.71 K jcn_only_AD Hel25E,I_chr2L_5540301_5540396 chr2L - chr2L_5540301_5540424;chr2L_5540301_5540971 chr2L_5540301_5540396 chr2L_5540201_5540300;chr2L_5540972_5541090 0.59 0.14 0.88 0.18 0.34 0.58 0.95 0.59 0.50 2.95 0.38 0.16 0.40 0.00 0.14 0.50 0.20 1.14 0.47 0.43 1.08 1.54 0.54 0.43 1.79 0.47 0.96 0.54 2.91 0.59 3.47 2.47 2.23 0.33 0.73 1.16 0.97 0.76 0.64 2.16 4.72 0.28 1.02 0.18 0.22 2.42 0.55 3.70 0.27 1.11 0.63 0.20 0.67 0.96 0.65 0.41 0.13 2.13 N alternative_acceptor CG42490,noncoding_3620,I_chr2L_18665287_18666474,RI_chr2L_18666413_18666474,CREI_chr2L_18666629_18666680 chr2L + chr2L_18665915_18666474 chr2L_18665915_18666352 chr2L_18665676_18665914;chr2L_18666475_18666511 54.43 45.45 57.14 NA NA 100.00 35.29 100.00 60.71 NA 100.00 41.67 100.00 100.00 100.00 50.00 43.75 41.67 NA 51.72 100.00 NA NA 47.37 NA NA 45.45 NA NA NA 39.29 NA NA 50.00 NA NA 43.75 NA 21.43 47.62 100.00 46.15 57.14 NA NA 45.00 100.00 NA 57.14 100.00 100.00 100.00 NA 50.00 42.86 100.00 100.00 NA K multi_cassette CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261460_265805 chr4_261460_263795;chr4_264212_264259;chr4_264375_265805 chr4_263796_264211;chr4_264260_264374 chr4_261360_261459;chr4_265806_265905 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG17119,sav chr3R - chr3R_18881694_18881763 chr3R_18881693_18881694;chr3R_18881763_18881764 chr3R_18881511_18881693;chr3R_18881764_18881860 4.02 3.38 3.70 4.27 1.87 3.30 6.00 2.67 3.60 5.06 5.88 3.37 4.71 1.18 3.25 3.03 3.70 5.38 1.90 3.37 1.08 6.94 2.01 4.32 8.54 5.83 9.77 13.21 18.46 6.02 4.76 0.00 5.08 3.70 4.35 8.79 3.23 4.67 4.85 5.63 10.87 2.58 0.00 3.63 3.75 4.84 2.05 7.69 2.17 4.70 3.45 4.04 5.11 5.93 1.64 2.61 4.02 0.00 K intron_retention Su(z)12 chr3L - chr3L_19912621_19913253 chr3L_19912620_19912621;chr3L_19913253_19913254 chr3L_19912462_19912620;chr3L_19913254_19914086 4.35 0.00 7.69 NA NA 0.00 14.29 0.00 0.00 NA NA 10.53 NA 9.09 22.22 0.00 NA 7.69 NA 7.69 NA 4.35 10.34 3.23 5.56 20.00 14.29 NA NA 0.00 NA NA 6.67 4.76 NA 0.00 4.88 3.85 0.00 3.03 NA 6.45 NA 0.00 4.55 0.00 0.00 NA 7.14 9.09 6.06 0.00 0.00 0.00 5.56 0.00 0.00 0.00 K intron_retention I_chr3L_834336_834491,CG13887,Gr61a chr3L + chr3L_837946_838012 chr3L_837945_837946;chr3L_838012_838013 chr3L_837877_837945;chr3L_838013_838624 100.00 NA 100.00 100.00 NA 100.00 95.74 92.86 100.00 90.91 100.00 96.15 NA 93.75 100.00 86.36 90.00 90.00 93.33 96.67 100.00 100.00 100.00 100.00 96.43 98.08 95.45 94.12 94.74 NA 95.45 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 96.15 94.44 87.50 90.91 100.00 100.00 100.00 NA 100.00 100.00 93.75 100.00 NA NA 100.00 100.00 100.00 100.00 K intron_retention I_chr2L_21135030_21137514,Dap160,I_chr2L_21139943_21140007 chr2L - chr2L_21137107_21137514 chr2L_21137106_21137107;chr2L_21137514_21137515 chr2L_21136901_21137106;chr2L_21137515_21137614 100.00 100.00 95.45 97.50 95.65 100.00 96.88 100.00 98.28 56.10 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 97.37 96.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 97.56 96.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 98.39 100.00 98.04 100.00 97.62 100.00 97.18 100.00 97.18 100.00 100.00 97.67 100.00 95.83 100.00 100.00 100.00 97.87 98.53 K intron_retention NaCP60E,I_chr2R_20798977_20799775,REI_chr2R_20803355_20804842,I_chr2R_20805053_20805170 chr2R + chr2R_20802986_20804842 chr2R_20802985_20802986;chr2R_20804842_20804843 chr2R_20802804_20802985;chr2R_20804843_20804942 11.76 NA NA NA NA NA NA NA 11.76 NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 11.76 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG8468 chr2R + chr2R_10107548_10108091;chr2R_10107548_10114915 chr2R_10107548_10108112 chr2R_10107405_10107547 95.62 97.14 95.11 91.70 97.06 95.60 95.00 96.88 96.46 93.22 96.00 96.23 99.18 95.51 95.62 95.04 95.51 94.48 96.91 96.62 95.04 94.01 96.30 95.42 92.11 93.57 97.52 96.15 94.89 96.02 96.14 96.24 93.71 95.52 94.32 91.80 94.26 96.40 98.44 97.00 92.21 98.44 95.24 95.30 97.09 95.26 98.19 95.16 96.03 97.67 96.72 93.75 95.86 96.94 95.57 94.58 98.15 96.40 K jcn_only_AA CG3744,I_chr3R_20701248_20701968 chr3R - chr3R_20698972_20699080 chr3R_20699005_20699080 chr3R_20699081_20699684;chr3R_20698660_20698971 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14715,I_chr3R_7506312_7506381 chr3R + chr3R_7500151_7500213 chr3R_7500150_7500151;chr3R_7500213_7500214 chr3R_7499906_7500150;chr3R_7500214_7500646 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3R_27554202_27554334,CG11563 chr3R + chr3R_27562962_27563037 chr3R_27562961_27562962;chr3R_27563037_27563038 chr3R_27562774_27562961;chr3R_27563038_27563322 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Mpcp chr3L + chr3L_14530949_14531103;chr3L_14530935_14531103 chr3L_14530803_14531103 chr3L_14531104_14531521;chr3L_14530797_14530802 98.69 98.53 98.87 97.70 99.02 99.06 97.78 97.67 99.01 99.72 99.56 98.53 97.71 97.64 98.59 97.15 98.93 98.37 98.26 98.72 99.07 99.31 98.68 99.22 99.09 98.51 97.76 98.69 98.37 97.53 98.56 98.25 99.19 98.24 97.93 96.92 99.65 99.08 99.28 99.20 95.83 99.25 98.46 98.85 99.14 98.76 98.96 98.72 98.77 98.37 98.40 98.91 99.12 97.04 98.58 99.32 99.06 98.12 K jcn_only_AD Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045316_16046104;chr3L_16045277_16046104;chr3L_16045275_16046104 chr3L_16045251_16046104 chr3L_16046105_16046204;chr3L_16045216_16045250 65.06 59.09 61.11 71.29 44.74 66.15 55.00 65.42 54.17 80.65 52.27 63.30 57.14 63.24 76.12 61.80 57.89 44.74 65.06 68.42 57.41 76.47 65.75 58.70 63.16 64.10 72.88 66.67 59.38 75.68 70.27 82.35 74.39 65.87 71.74 60.47 57.14 77.78 63.89 73.63 64.29 64.17 65.57 64.91 71.79 68.63 73.08 73.68 55.45 54.17 65.38 51.85 72.00 NA 54.88 66.67 NA 83.33 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2814327_2817753 chr2R_2814327_2814894;chr2R_2815657_2816013;chr2R_2816342_2816577;chr2R_2816779_2817459;chr2R_2817604_2817753 chr2R_2814895_2815656;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817460_2817603 chr2R_2814227_2814326;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 K intron_retention I_chr3R_23771063_23772599,CG4951,RI_chr3R_23778808_23778861 chr3R - chr3R_23778808_23778865 chr3R_23778807_23778808;chr3R_23778865_23778866 chr3R_23778715_23778807;chr3R_23778866_23778961 1.59 4.41 0.00 0.00 0.00 0.00 0.00 4.35 1.18 0.00 0.00 2.04 5.56 0.00 4.48 8.33 0.00 0.00 0.00 3.48 0.00 1.92 3.90 1.18 0.00 4.44 13.16 5.56 1.59 0.00 7.84 0.00 3.76 3.53 3.92 1.92 0.00 0.00 0.00 3.09 3.33 4.63 4.35 4.65 0.00 0.86 0.00 0.00 3.61 0.00 0.00 5.26 0.00 0.00 1.67 2.74 1.69 1.77 K intron_retention CG18228,RpA-70 chr3R - chr3R_4089996_4090056 chr3R_4089995_4089996;chr3R_4090056_4090057 chr3R_4089751_4089995;chr3R_4090057_4090161 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette DCAP,E_chr2R_6159586_6174578,I_chr2R_6162362_6166803,I_chr2R_6163353_6166716,I_chr2R_6163353_6166727,I_chr2R_6164310_6172914,I_chr2R_6172307_6179999,I_chr2R_6178643_6181126,RI_chr2R_6183553_6192101,I_chr2R_6188094_6192101 chr2R + chr2R_6159586_6182116 chr2R_6159586_6179999;chr2R_6180378_6180845;chr2R_6180945_6182116 chr2R_6180000_6180377;chr2R_6180846_6180944 chr2R_6159486_6159585;chr2R_6182117_6182270 100.00 83.33 100.00 NA 100.00 66.67 NA 80.00 100.00 100.00 NA 100.00 NA 100.00 60.00 100.00 100.00 NA 75.00 100.00 NA NA 100.00 83.33 NA 100.00 66.67 NA 100.00 75.00 100.00 NA 50.00 85.71 NA 100.00 83.33 100.00 80.00 85.71 NA 87.50 60.00 100.00 100.00 100.00 100.00 100.00 83.33 80.00 100.00 75.00 100.00 75.00 80.00 100.00 100.00 100.00 K intron_retention wge chr3R - chr3R_18542773_18542928 chr3R_18542772_18542773;chr3R_18542928_18542929 chr3R_18542738_18542772;chr3R_18542929_18543063 0.00 0.00 0.00 9.68 NA 3.12 20.83 2.94 0.00 0.00 0.00 0.00 0.00 4.17 2.70 0.00 0.00 0.00 0.00 7.32 0.00 11.43 3.39 0.00 0.00 3.45 14.29 4.76 0.00 0.00 2.74 NA 1.85 0.00 0.00 20.93 0.00 0.00 0.00 3.28 6.67 0.00 NA 0.00 0.00 0.00 0.00 4.26 3.64 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 K intron_retention CG8678,RI_chr2L_21213167_21213227,snRNA:U4:39B,CG8679 chr2L - chr2L_21214648_21220259 chr2L_21214647_21214648;chr2L_21220259_21220260 chr2L_21213917_21214647;chr2L_21220260_21220516 8.33 10.34 10.71 5.77 0.00 7.41 14.29 5.08 8.33 NA 6.90 3.77 11.54 0.00 8.33 4.55 4.76 38.89 6.90 15.79 11.76 6.67 8.33 21.05 NA 7.41 5.56 18.75 NA NA 15.15 NA 0.00 6.82 8.33 35.71 NA NA 14.29 9.68 NA 10.53 8.33 10.71 NA NA 7.14 NA 10.00 8.00 20.00 0.00 NA NA 11.43 NA 8.33 NA K jcn_only_AA I_chr3R_8822346_8822403,CG7518 chr3R + chr3R_8825247_8825316 chr3R_8825247_8825304 chr3R_8825163_8825246;chr3R_8825317_8825382 64.00 66.67 70.10 63.38 58.97 61.02 67.35 63.04 67.09 58.70 58.46 63.07 59.09 59.77 58.82 66.00 72.55 63.41 53.85 63.87 71.64 67.37 76.16 63.28 82.81 69.89 55.75 62.07 84.91 64.62 67.05 54.29 70.59 62.86 58.97 67.11 73.47 65.35 62.35 64.76 67.65 67.70 61.54 68.81 59.09 68.00 60.00 69.09 69.23 63.64 64.00 60.94 65.38 60.00 69.52 63.46 64.86 42.31 K intron_retention yata chr3R + chr3R_25575891_25575949 chr3R_25575890_25575891;chr3R_25575949_25575950 chr3R_25574938_25575890;chr3R_25575950_25576173 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 5.68 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 1.32 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Caf1,mRpS10 chr3R + chr3R_11051637_11051690 chr3R_11051636_11051637;chr3R_11051690_11051691 chr3R_11051568_11051636;chr3R_11051691_11051756 6.67 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA 23.53 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Rad23 chr4 + chr4_330644_330704 chr4_330643_330644;chr4_330704_330705 chr4_330320_330643;chr4_330705_331019 0.00 0.00 0.00 0.00 0.00 0.00 0.77 1.35 1.96 3.23 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 5.13 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 1.13 0.00 0.00 0.00 0.00 0.00 2.50 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD I_chr3L_203620_207231,CG7028,I_chr3L_207277_208117 chr3L - chr3L_207277_208117 chr3L_207277_208089 chr3L_207232_207276;chr3L_208118_208217 90.69 NA NA 95.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 85.19 NA NA NA NA NA NA NA NA NA NA 97.30 NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA 90.91 90.48 NA NA NA NA NA NA NA NA K intron_retention CG3523 chr2L + chr2L_3060143_3060229 chr2L_3060142_3060143;chr2L_3060229_3060230 chr2L_3059605_3060142;chr2L_3060230_3064807 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.22 0.00 0.00 0.19 0.18 0.23 0.00 0.00 0.22 0.25 0.00 0.37 0.00 0.45 0.00 0.49 1.40 0.00 0.00 0.17 0.00 0.00 0.12 0.00 0.00 0.23 0.22 0.14 0.00 0.00 0.21 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.29 0.00 0.00 0.17 0.00 0.00 0.00 K intron_retention CG17019,I_chr2R_8821104_8821171 chr2R - chr2R_8821104_8821175 chr2R_8821103_8821104;chr2R_8821175_8821176 chr2R_8821004_8821103;chr2R_8821176_8821271 0.00 0.00 0.00 1.83 3.23 0.00 0.90 1.65 0.00 0.00 0.00 2.58 0.00 2.67 0.00 0.00 0.00 1.37 0.00 0.89 0.00 0.84 0.00 1.90 0.00 0.00 1.90 1.14 8.04 0.85 0.00 0.00 1.03 1.46 0.00 0.85 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.51 1.43 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Hrb98DE,I_chr3R_24425722_24428493,snoRNA:Psi28S-3405a,snoRNA:Psi28S-3305a,snoRNA:Psi28S-3405b,snoRNA:Psi28S-3405c,snoRNA:Psi28S-3305b,snoRNA:Psi28S-3405d,RI_chr3R_24429041_24431183 chr3R + chr3R_24426918_24428493 chr3R_24426917_24426918;chr3R_24428493_24428494 chr3R_24426440_24426917;chr3R_24428494_24428593 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.30 0.49 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 K alternative_acceptor CG5273 chrX + chrX_653719_653808 chrX_653719_653787 chrX_653471_653718;chrX_653809_654561 57.69 55.56 50.00 62.50 35.29 60.00 40.91 54.17 45.24 NA 25.00 64.00 NA 62.50 57.14 52.38 46.15 58.82 58.33 62.50 33.33 75.00 58.06 57.69 40.00 58.33 77.78 NA 78.57 55.56 52.17 NA 50.00 64.00 66.67 76.92 62.50 57.89 50.00 53.33 NA 44.44 54.55 57.14 NA 62.50 75.00 NA 56.25 75.00 56.67 66.67 63.64 45.83 56.00 77.78 65.00 NA N jcn_only_AA alt chr3R - chr3R_13500526_13500610 chr3R_13500546_13500610 chr3R_13500611_13500733;chr3R_13499903_13500525 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 89.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor RI_chrX_502548_513324,CG13366,I_chrX_508729_508806,I_chrX_509497_513324,I_chrX_509727_511407,I_chrX_509727_511477,noncoding_21186,I_chrX_509834_511407,CRE_chrX_509851_511307,I_chrX_510004_511307,I_chrX_510004_511407,I_chrX_513176_513324,I_chrX_513519_513631 chrX - chrX_509834_511407;chrX_509727_511407 chrX_510004_511407 chrX_511408_511507;chrX_509715_509726 41.67 NA NA 75.00 NA NA NA 28.57 41.67 NA NA NA NA NA NA 40.00 NA NA 20.00 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA 42.86 NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG40042 chr2LHet - chr2LHet_168170_168233 chr2LHet_168188_168233 chr2LHet_168234_168403;chr2LHet_167980_168169 0.00 0.00 0.29 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.37 0.00 0.00 0.00 0.00 0.32 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.21 0.00 0.00 0.52 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.26 0.10 K intron_retention Hsf,I_chr2R_14018415_14018474 chr2R - chr2R_14018551_14018786 chr2R_14018550_14018551;chr2R_14018786_14018787 chr2R_14018475_14018550;chr2R_14018787_14018892 0.00 0.00 0.00 2.04 0.00 0.00 1.54 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 1.23 0.00 0.00 1.92 1.23 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 1.16 K jcn_only_AD GlcAT-S chr2L + chr2L_9617610_9621144 chr2L_9617841_9621144 chr2L_9621145_9621417;chr2L_9616838_9617609 4.67 NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA 5.00 NA NA 5.00 NA NA NA NA NA NA NA NA NA 12.00 NA NA NA NA NA 0.00 3.45 NA NA NA 12.00 NA 4.35 NA 2.38 NA NA NA NA NA NA NA NA NA 0.00 K alternative_acceptor crq,I_chr2L_452169_452576,I_chr2L_452737_452797 chr2L - chr2L_450879_452576 chr2L_452169_452576 chr2L_452577_452676;chr2L_450666_450878 0.00 0.00 0.00 0.91 0.00 0.00 0.90 0.00 0.92 0.00 2.63 0.85 0.00 0.00 1.52 0.60 0.00 0.00 0.00 0.70 0.00 1.61 2.27 3.33 3.85 0.00 1.49 3.33 0.00 0.00 0.90 0.00 0.00 0.72 0.00 0.00 3.23 0.00 0.00 1.41 0.00 0.82 2.27 2.04 0.00 2.00 0.00 2.27 0.00 0.00 1.54 2.70 0.00 0.00 1.20 0.00 0.00 0.00 N alternative_donor bchs,I_chr2L_5907926_5908312 chr2L + chr2L_5907644_5908312;chr2L_5907926_5908312 chr2L_5907288_5908312 chr2L_5908313_5908412;chr2L_5907175_5907287 96.77 96.88 91.89 98.28 95.24 100.00 93.75 93.55 91.76 100.00 100.00 94.03 96.97 97.44 94.34 97.22 92.59 93.33 97.06 92.31 96.97 91.30 95.83 100.00 95.45 97.22 95.24 100.00 95.65 98.33 98.15 100.00 94.67 93.44 100.00 97.78 93.62 100.00 95.83 92.19 100.00 93.85 100.00 97.83 97.62 98.18 97.56 95.77 96.77 92.86 96.30 96.15 100.00 100.00 100.00 94.74 96.55 92.68 K cassette quemao,I_chr3L_7341776_7344368 chr3L + chr3L_7341776_7344368 chr3L_7341776_7341962;chr3L_7342118_7344368 chr3L_7341963_7342117 chr3L_7341676_7341775;chr3L_7344369_7344468 100.00 100.00 100.00 100.00 98.48 98.57 100.00 99.34 100.00 98.28 98.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.90 99.30 100.00 99.07 100.00 98.48 100.00 100.00 100.00 100.00 98.78 100.00 100.00 97.78 98.91 99.17 98.15 100.00 98.78 100.00 100.00 100.00 100.00 99.31 98.31 98.84 100.00 98.89 100.00 100.00 99.26 98.36 100.00 97.83 100.00 100.00 98.96 100.00 100.00 100.00 K intron_retention I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545781_17545850 chr2R_17545780_17545781;chr2R_17545850_17545851 chr2R_17545730_17545780;chr2R_17545851_17545985 0.00 0.00 NA NA NA NA 0.00 0.00 6.45 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 0.00 5.88 NA NA 0.00 0.00 0.00 0.00 13.33 0.00 NA 10.53 0.00 0.00 0.00 4.55 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG16817 chr3R + chr3R_5504371_5504441 chr3R_5504387_5504441 chr3R_5504442_5504698;chr3R_5504284_5504370 0.00 0.00 0.00 0.08 0.00 0.00 0.11 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG40485 chrX - chrX_22363289_22363599 chrX_22363297_22363599 chrX_22363600_22364196;chrX_22363005_22363288 100.00 100.00 100.00 NA NA 100.00 100.00 NA 98.31 NA 100.00 100.00 NA NA 94.29 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 95.00 100.00 96.88 100.00 100.00 100.00 100.00 96.43 NA 96.36 100.00 100.00 98.21 100.00 100.00 NA 95.65 100.00 100.00 100.00 100.00 95.35 97.22 97.50 100.00 100.00 100.00 100.00 92.00 98.31 100.00 N jcn_only_AA NTPase chr2L - chr2L_2881305_2881381 chr2L_2881321_2881381 chr2L_2881382_2882511;chr2L_2881215_2881304 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 81.60 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG1354,I_chrX_9672972_9673084,I_chrX_9673026_9673084 chrX + chrX_9673026_9673084;chrX_9672947_9673084;chrX_9672967_9673084 chrX_9672972_9673084 chrX_9673085_9673184;chrX_9672926_9672946 0.00 1.12 1.47 1.08 0.00 0.00 0.00 0.00 1.87 0.00 3.23 1.25 0.00 0.00 1.52 0.00 0.00 0.00 0.00 2.54 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 1.69 0.00 0.00 0.00 1.72 0.00 1.09 0.00 3.70 0.00 0.94 0.00 1.08 0.00 0.00 1.43 2.00 0.00 0.00 1.22 1.64 1.11 0.00 2.50 1.10 1.89 1.43 0.00 0.00 K intron_retention PNUTS,I_chr2L_870553_871317 chr2L + chr2L_872081_872207 chr2L_872080_872081;chr2L_872207_872208 chr2L_871806_872080;chr2L_872208_873539 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.14 5.36 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Nedd4,I_chr3L_17532828_17532882,I_chr3L_17532828_17533787,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17532828_17533787 chr3L_17532827_17532828;chr3L_17533787_17533788 chr3L_17532728_17532827;chr3L_17533788_17533887 93.94 100.00 90.00 100.00 NA NA 93.33 NA 94.12 NA NA 80.00 NA NA NA NA NA NA NA 86.67 NA 95.24 93.75 100.00 90.00 NA 100.00 NA 90.91 100.00 NA NA 100.00 NA NA NA 100.00 90.91 94.12 92.86 NA 92.86 NA 92.86 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 88.89 NA K intron_retention mub,RI_chr3L_21901021_21901163,I_chr3L_21908756_21909179 chr3L + chr3L_21914088_21914192 chr3L_21914087_21914088;chr3L_21914192_21914193 chr3L_21914067_21914087;chr3L_21914193_21914427 96.43 100.00 100.00 96.43 100.00 100.00 95.45 95.45 98.48 100.00 100.00 97.44 93.75 93.33 100.00 94.12 94.44 94.44 NA 95.83 94.74 98.00 98.41 96.08 97.22 100.00 96.77 95.45 100.00 96.43 94.12 100.00 87.50 96.00 96.30 100.00 98.61 97.73 97.92 97.92 100.00 94.74 94.12 91.89 100.00 96.00 96.43 91.67 97.30 93.75 94.74 96.30 100.00 95.83 92.00 100.00 96.67 77.78 K intron_retention KrT95D,I_chr3R_19825840_19825904 chr3R - chr3R_19826503_19828143 chr3R_19826502_19826503;chr3R_19828143_19828144 chr3R_19825902_19826502;chr3R_19828144_19828269 6.25 6.80 5.41 9.22 2.70 3.92 9.15 7.48 7.08 9.09 6.25 9.14 12.31 7.96 4.30 6.04 7.89 6.32 9.52 4.07 6.59 6.19 12.86 6.45 12.20 4.30 7.86 6.42 6.47 3.64 4.23 4.96 3.75 5.52 5.56 9.47 7.63 9.52 5.79 5.58 2.80 5.35 6.38 5.06 3.57 5.69 9.30 3.54 9.14 8.89 8.51 8.22 3.03 4.11 5.04 6.19 5.48 2.26 K intron_retention didum,I_chr2R_3393005_3393348 chr2R + chr2R_3394883_3394940 chr2R_3394882_3394883;chr2R_3394940_3394941 chr2R_3394354_3394882;chr2R_3394941_3395165 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG6151,noncoding_12788,I_chr3L_15803949_15804163,RI_chr3L_15803949_15805547,I_chr3L_15804255_15804319 chr3L - chr3L_15803949_15804319 chr3L_15804255_15804319 chr3L_15804320_15804419;chr3L_15803849_15803948 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention ena chr2R + chr2R_15048921_15048980 chr2R_15048920_15048921;chr2R_15048980_15048981 chr2R_15048699_15048920;chr2R_15048981_15049098 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.80 0.25 0.00 0.00 0.63 0.00 0.00 0.00 0.58 1.79 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.40 0.00 0.43 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261460_263891 chr4_261459_261460;chr4_263891_263892 chr4_261360_261459;chr4_263892_263991 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 96.97 100.00 100.00 100.00 97.44 100.00 100.00 96.15 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 88.89 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Tob,RI_chrX_15977009_15983293 chrX - chrX_15974736_15974836 chrX_15974739_15974836 chrX_15974837_15974990;chrX_15973052_15974735 92.43 93.94 90.32 NA 82.61 86.96 96.00 NA 91.53 NA NA 95.08 NA 96.55 NA 92.00 NA NA NA 94.34 NA 92.86 93.10 89.66 95.00 NA 91.30 NA NA NA 85.71 NA NA 80.85 NA 88.00 93.33 92.86 90.70 94.74 NA 90.20 NA 91.89 NA NA NA 100.00 91.89 93.33 96.15 100.00 NA NA 88.00 NA NA NA K alternative_acceptor Spn,I_chr3L_2511764_2512148 chr3L - chr3L_2512473_2512531 chr3L_2512482_2512531 chr3L_2512532_2512731;chr3L_2512295_2512472 5.00 NA NA 2.94 NA 7.69 0.00 10.00 2.94 NA NA 7.14 5.88 NA 5.56 6.67 NA NA 10.00 4.35 NA 0.00 NA 0.00 NA 5.56 NA NA NA 6.67 NA NA 4.17 5.00 NA NA 4.35 NA NA 0.00 NA 3.45 6.25 NA NA NA NA 4.76 9.68 NA NA NA NA NA 0.00 NA NA 5.56 K jcn_only_AD CG7816,R_chr3R_25691122_25691551,RI_chr3R_25691122_25692883,RI_chr3R_25691122_25694436 chr3R - chr3R_25691122_25694365 chr3R_25691122_25694254 chr3R_25691022_25691121;chr3R_25694366_25694618 83.20 85.14 88.35 84.14 92.50 85.71 84.95 72.99 88.98 76.74 82.61 89.35 72.64 80.77 83.17 83.90 85.71 91.49 87.88 83.20 76.40 85.88 85.62 86.73 85.58 87.50 78.95 71.62 61.86 74.63 94.87 75.44 73.68 77.24 84.85 74.65 82.18 89.04 74.73 90.24 80.33 87.50 84.93 81.05 81.93 78.46 84.56 80.60 83.83 77.67 82.44 89.61 81.03 77.19 88.24 80.28 85.29 76.62 K alternative_acceptor CG31908 chr2L - chr2L_7026982_7027193 chr2L_7027020_7027193 chr2L_7027194_7027261;chr2L_7026724_7026981 96.67 93.33 100.00 100.00 96.00 100.00 100.00 98.18 98.95 87.50 96.97 97.78 96.00 96.67 96.43 98.11 100.00 95.24 100.00 98.00 100.00 88.24 96.30 97.06 100.00 100.00 100.00 93.33 100.00 83.33 100.00 92.86 93.10 100.00 100.00 95.24 96.00 100.00 95.24 93.94 95.00 100.00 100.00 88.00 75.00 92.86 81.08 94.44 98.18 91.43 97.06 100.00 75.00 94.12 100.00 94.12 95.00 72.00 K intron_retention Pino,E_chr2L_1128346_1128799,I_chr2L_1128348_1128803 chr2L - chr2L_1128346_1128803 chr2L_1128345_1128346;chr2L_1128803_1128804 chr2L_1128248_1128345;chr2L_1128804_1128899 4.76 NA NA 8.70 NA NA 9.09 8.00 6.90 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 6.67 NA 11.76 2.17 0.00 14.29 NA 6.67 15.00 NA 5.88 0.00 NA NA 0.00 NA NA 9.76 0.00 6.45 0.00 NA 4.76 NA 10.53 NA 0.00 NA NA 5.26 14.29 3.45 0.00 NA NA 6.67 0.00 NA NA K intron_retention Chro,I_chr3L_22870968_22871036,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22871119_22871225 chr3L_22871118_22871119;chr3L_22871225_22871226 chr3L_22871037_22871118;chr3L_22871226_22871241 93.53 NA NA 100.00 NA NA 100.00 91.67 94.74 NA NA 100.00 NA NA NA 90.91 NA NA 100.00 91.67 NA NA 88.89 NA NA 100.00 90.91 NA NA NA NA NA NA 92.31 NA NA 100.00 NA NA 90.91 NA 92.31 NA 88.89 NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA K mutually_exclusive Hrb27C,I_chr2L_6924401_6924743 chr2L + chr2L_6920862_6922637,chr2L_6922827_6923783 chr2L_6920862_6920932,chr2L_6921074_6923783 chr2L_6922638_6922826 chr2L_6920933_6921073 chr2L_6920793_6920861;chr2L_6923784_6924400 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.48 NA 0.00 0.00 1.23 1.06 1.14 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 1.43 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG10103,noncoding_10997 chr3L - chr3L_6747908_6748172 chr3L_6747908_6748046 chr3L_6747845_6747907;chr3L_6748173_6748223 69.78 NA NA NA NA NA NA NA NA NA NA 69.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 92.00 96.97 NA NA NA NA NA NA NA NA NA NA NA NA 78.79 70.00 NA NA NA 55.00 NA 52.00 NA NA NA NA NA NA NA NA 61.54 NA K intron_retention RpL5,I_chr2L_22428750_22428846 chr2L - chr2L_22429111_22429352 chr2L_22429110_22429111;chr2L_22429352_22429353 chr2L_22428847_22429110;chr2L_22429353_22429396 11.43 16.67 18.18 11.76 13.33 31.58 25.00 8.26 24.59 12.82 12.00 31.25 35.00 32.00 6.76 33.33 4.00 11.11 8.22 10.53 18.52 5.88 57.14 45.45 NA 9.09 65.00 2.90 1.25 8.93 3.59 2.56 5.21 13.13 13.64 9.76 NA NA NA 0.83 2.68 6.28 20.51 0.78 3.31 4.76 NA 1.92 18.33 60.00 NA 46.15 4.55 NA 4.30 33.33 64.29 10.77 K jcn_only_AD I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10065706_10065776;chr2R_10065652_10065776 chr2R_10065709_10065776 chr2R_10065777_10066101;chr2R_10065603_10065651 30.48 26.09 30.48 30.58 30.41 28.67 33.84 33.18 29.62 25.37 26.71 32.82 25.56 31.34 31.25 32.76 28.57 33.07 30.41 29.67 35.10 24.38 29.35 31.30 39.19 25.48 30.43 35.71 30.25 29.41 33.33 21.90 32.14 29.03 24.68 30.51 29.57 24.20 33.24 34.94 26.36 32.82 33.78 30.11 32.48 30.60 32.89 26.71 35.57 33.51 31.23 28.49 27.78 42.86 24.58 36.75 31.53 23.72 K intron_retention I_chr3R_16141663_16144698,CG5077,I_chr3R_16144997_16145285,I_chr3R_16145228_16145285,I_chr3R_16147605_16147670 chr3R + chr3R_16144753_16145289 chr3R_16144752_16144753;chr3R_16145289_16145290 chr3R_16144699_16144752;chr3R_16145290_16145385 26.32 50.00 26.32 28.57 10.53 16.67 36.36 23.08 25.00 21.43 15.38 21.05 29.41 21.43 18.52 36.00 26.32 15.38 37.50 29.27 22.22 34.29 26.92 24.00 29.41 19.23 35.48 38.10 37.04 40.00 22.73 23.53 33.33 29.73 20.83 36.84 19.05 NA 16.67 40.74 35.71 18.18 20.00 50.00 16.67 61.11 25.00 38.89 20.00 26.32 24.00 44.44 63.64 NA 0.00 63.64 28.57 22.22 K intron_retention ric8a chrX + chrX_9150411_9150475 chrX_9150410_9150411;chrX_9150475_9150476 chrX_9150210_9150410;chrX_9150476_9153192 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 11.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_donor CG6293,Bruce chr3R - chr3R_6136241_6137129;chr3R_6136241_6136995 chr3R_6136241_6137183 chr3R_6135621_6136240;chr3R_6137184_6137328 99.83 99.73 99.83 99.63 99.61 100.00 98.81 99.77 99.87 100.00 99.72 99.47 98.26 99.77 100.00 99.87 100.00 99.40 99.82 99.62 100.00 99.81 100.00 100.00 100.00 100.00 99.73 100.00 98.93 99.78 99.83 100.00 99.75 99.75 100.00 100.00 100.00 100.00 100.00 99.02 100.00 99.88 99.73 100.00 99.76 99.83 100.00 99.73 99.79 100.00 99.77 100.00 100.00 99.59 99.63 100.00 100.00 100.00 K cassette bru-2 chr2L + chr2L_12389671_12395899 chr2L_12389671_12393390;chr2L_12393859_12395899 chr2L_12393391_12393858 chr2L_12389634_12389670;chr2L_12395900_12396030 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 90.91 100.00 100.00 NA 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 83.33 85.71 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 75.00 NA NA 85.71 NA K cassette CG16817 chr3R + chr3R_5503809_5504441 chr3R_5503809_5504283;chr3R_5504387_5504441 chr3R_5504284_5504386 chr3R_5503640_5503808;chr3R_5504442_5504698 99.10 99.42 99.41 96.17 99.21 100.00 92.83 99.20 99.12 95.24 100.00 98.78 99.34 98.72 98.44 99.02 100.00 100.00 99.39 98.92 96.64 97.37 98.22 98.77 99.37 99.38 98.11 99.07 98.84 99.01 99.55 99.09 98.44 99.61 100.00 97.37 98.82 98.83 99.59 100.00 98.36 100.00 100.00 99.38 100.00 99.46 99.55 98.78 99.69 97.94 99.10 99.35 97.84 97.96 98.98 100.00 99.41 98.62 K cassette CG33111,noncoding_18661,I_chr3R_19633752_19633821 chr3R - chr3R_19627964_19632347 chr3R_19627964_19631481;chr3R_19631843_19632347 chr3R_19631482_19631842 chr3R_19627864_19627963;chr3R_19632348_19632486 58.82 61.11 50.00 32.56 58.82 73.33 30.43 41.38 58.97 54.55 46.15 80.00 75.00 52.94 68.75 42.11 38.46 58.82 66.67 63.16 63.64 63.64 58.33 52.00 33.33 37.50 66.67 83.33 76.47 73.33 35.90 62.50 78.95 46.88 56.25 38.46 75.00 57.14 46.15 57.14 45.00 56.41 63.64 58.82 90.48 62.50 55.56 68.42 63.33 65.00 57.69 60.00 60.00 50.00 59.09 52.17 44.44 73.33 K intron_retention lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22831575_22831635 chr2L_22831574_22831575;chr2L_22831635_22831636 chr2L_22831506_22831574;chr2L_22831636_22831819 3.12 3.03 3.88 8.77 2.04 3.77 7.45 2.53 2.27 0.00 2.00 3.29 4.55 3.37 4.48 2.92 2.02 2.78 4.03 3.88 0.00 0.00 0.00 3.28 7.89 10.20 5.41 4.76 6.25 3.70 4.35 3.12 2.67 3.17 3.28 7.32 0.00 0.00 0.00 1.98 1.82 2.70 3.06 0.00 5.88 3.08 0.00 3.28 4.09 0.00 3.19 0.00 0.00 0.00 0.00 3.92 3.17 4.11 K intron_retention faf,RI_chr3R_27603474_27603893,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27603160_27603893 chr3R_27603159_27603160;chr3R_27603893_27603894 chr3R_27603140_27603159;chr3R_27603894_27603993 46.15 NA NA NA NA NA 46.15 NA 46.15 NA NA 81.82 NA NA NA NA NA NA NA NA NA 66.67 45.45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 43.75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG9945,CG16742 chr2R + chr2R_16506933_16506984 chr2R_16506932_16506933;chr2R_16506984_16506985 chr2R_16506786_16506932;chr2R_16506985_16507524 23.06 12.82 41.67 18.92 19.05 30.00 19.51 17.07 18.37 25.00 10.53 18.60 10.53 25.00 18.52 4.76 5.00 23.81 21.43 23.40 11.11 48.72 21.57 13.64 22.73 30.00 31.43 33.33 33.33 24.14 30.43 31.03 47.37 12.90 19.05 16.00 31.71 13.79 17.39 25.49 17.65 29.03 30.43 20.00 26.67 32.26 34.38 39.13 20.00 40.74 28.26 36.84 NA 35.48 21.88 14.29 12.50 27.78 N jcn_only_AD Spase12 chr3R - chr3R_25316476_25316531 chr3R_25316476_25316527 chr3R_25316407_25316475;chr3R_25316532_25316612 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 2.07 1.17 0.00 0.00 1.43 0.00 0.00 1.14 0.00 0.00 0.00 0.00 1.57 1.75 0.00 0.00 0.00 0.00 0.00 0.99 1.23 K alternative_donor Vap-33-1 chrX + chrX_3843206_3843513;chrX_3843210_3843513;chrX_3843406_3843513;chrX_3843214_3843513 chrX_3843099_3843513 chrX_3843514_3843746;chrX_3843030_3843098 0.00 0.00 0.00 1.20 0.00 0.00 0.00 1.02 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Hs2st,I_chr2L_19452794_19453250 chr2L - chr2L_19443852_19443911 chr2L_19443851_19443852;chr2L_19443911_19443912 chr2L_19443631_19443851;chr2L_19443912_19444050 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 6.25 0.00 0.00 0.00 0.00 NA 0.00 0.00 1.72 0.00 NA 0.00 0.00 0.00 0.00 3.45 9.09 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K jcn_only_AA CG16838,I_chr3L_16125390_16125510 chr3L + chr3L_16125390_16125588;chr3L_16125390_16125485 chr3L_16125390_16125639 chr3L_16125290_16125389;chr3L_16125640_16126338 81.72 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 86.36 NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA 93.55 NA 73.91 NA NA NA NA NA 82.50 NA NA NA NA NA NA NA NA NA 80.95 K intron_retention raw,I_chr2L_8712599_8712673,I_chr2L_8735201_8735693 chr2L - chr2L_8710591_8710726 chr2L_8710590_8710591;chr2L_8710726_8710727 chr2L_8710019_8710590;chr2L_8710727_8711637 1.16 0.00 0.00 3.64 5.41 0.00 2.08 2.56 2.02 0.00 0.00 1.35 0.00 8.33 0.00 0.00 0.00 0.00 0.00 1.03 0.00 12.82 1.16 0.00 3.77 0.00 5.26 8.00 8.06 2.35 2.94 2.17 3.03 0.00 0.00 1.69 1.82 0.00 1.83 0.00 5.71 2.35 2.70 2.63 2.22 0.00 0.00 3.85 3.45 0.00 4.29 0.00 0.00 2.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG8611,I_chrX_17309193_17309577 chrX - chrX_17315954_17316015 chrX_17315957_17316015 chrX_17316016_17316173;chrX_17313969_17315953 60.00 NA NA NA NA NA 40.00 33.33 NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 63.64 NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 62.50 NA NA NA NA NA NA NA NA 83.33 K jcn_only_AA CG6370 chr2R - chr2R_13652554_13652615 chr2R_13652557_13652615 chr2R_13652616_13652684;chr2R_13652488_13652553 97.29 98.14 97.87 97.00 96.86 98.37 96.48 96.98 98.15 97.13 98.30 97.52 97.17 97.80 97.77 95.96 97.29 98.70 97.37 96.56 96.61 96.60 98.05 96.39 98.08 97.67 98.12 98.15 97.19 98.32 96.36 97.75 96.66 97.30 96.60 96.63 96.63 96.79 97.26 97.58 96.83 97.76 95.47 96.71 97.74 96.43 97.65 97.84 97.52 97.05 97.54 96.91 98.20 97.35 96.86 96.67 97.29 96.28 K jcn_only_AA cic chr3R + chr3R_16125131_16125189 chr3R_16125131_16125186 chr3R_16124803_16125130;chr3R_16125190_16125353 90.24 88.75 89.61 90.00 95.24 85.54 90.08 88.12 87.86 96.36 89.47 91.61 90.12 87.06 92.16 90.53 92.92 87.13 89.52 87.28 93.33 88.76 86.67 90.62 93.18 90.99 92.66 85.90 90.24 82.46 88.00 81.40 93.06 86.54 84.31 89.29 94.22 91.03 92.59 89.58 93.10 95.52 95.51 90.23 90.24 96.55 93.18 94.64 90.66 88.57 88.10 92.86 93.33 95.24 89.08 83.33 91.18 92.00 K intron_retention CG3925 chr3R + chr3R_5876102_5876161 chr3R_5876101_5876102;chr3R_5876161_5876162 chr3R_5875462_5876101;chr3R_5876162_5876664 0.00 NA 0.00 0.00 0.00 0.00 2.94 0.00 4.35 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 NA 0.00 1.92 3.77 0.00 1.92 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_244354_244443 chr4_244368_244443 chr4_244444_244512;chr4_244183_244353 100.00 95.00 100.00 97.06 100.00 100.00 100.00 97.83 97.73 100.00 100.00 97.67 100.00 96.30 100.00 100.00 100.00 100.00 96.77 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 97.62 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.78 100.00 92.86 NA 100.00 93.33 100.00 98.28 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 95.00 K intron_retention Dhfr chr3R + chr3R_12307063_12307112 chr3R_12307062_12307063;chr3R_12307112_12307113 chr3R_12306914_12307062;chr3R_12307113_12307640 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 4.92 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 K intron_retention CG13364 chrX - chrX_519139_519198 chrX_519138_519139;chrX_519198_519199 chrX_518735_519138;chrX_519199_519335 19.56 20.83 18.75 21.43 17.86 23.08 19.61 23.08 18.52 22.50 9.52 19.51 24.00 26.92 11.11 24.39 18.52 20.00 22.73 16.05 11.76 7.14 29.41 28.57 64.29 20.00 NA 18.52 18.92 12.50 20.51 7.69 7.27 12.50 23.08 29.41 17.65 25.00 31.25 16.67 12.50 18.03 22.58 11.11 10.61 12.77 20.00 12.20 20.83 33.33 25.00 25.93 13.33 26.67 15.15 16.67 25.00 6.06 K intron_retention Ca-P60A,I_chr2R_19817636_19817680,I_chr2R_19820338_19823289 chr2R - chr2R_19815266_19816836 chr2R_19815265_19815266;chr2R_19816836_19816837 chr2R_19815005_19815265;chr2R_19816837_19816954 100.00 100.00 100.00 100.00 100.00 100.00 99.34 100.00 100.00 100.00 97.78 100.00 100.00 98.72 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.53 100.00 100.00 100.00 100.00 99.24 100.00 98.77 100.00 100.00 98.11 100.00 100.00 98.81 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 K cassette CG32809,CEI_chrX_1578779_1579219,I_chrX_1579313_1579679,CEI_chrX_1579569_1579679,RI_chrX_1585391_1586471,I_chrX_1589508_1589564 chrX - chrX_1578779_1579679 chrX_1578779_1579219;chrX_1579569_1579679 chrX_1579220_1579568 chrX_1578679_1578778;chrX_1579680_1579763 72.73 58.82 69.23 64.71 60.00 69.23 62.50 93.75 77.42 72.73 83.33 100.00 73.33 72.22 90.00 90.91 80.00 71.43 86.67 78.12 81.82 79.17 61.90 71.43 60.00 46.15 75.00 66.67 91.67 73.33 80.77 71.43 73.33 81.82 53.85 62.50 48.15 60.00 75.00 68.18 100.00 67.86 75.00 87.50 50.00 71.43 60.00 89.47 78.26 62.50 69.23 72.73 80.00 62.50 75.00 69.23 50.00 85.71 K intron_retention noncoding_16269,GstD9,I_chr3R_8192634_8193249,GstD1 chr3R - chr3R_8192634_8194924 chr3R_8192633_8192634;chr3R_8194924_8194925 chr3R_8192534_8192633;chr3R_8194925_8194962 5.26 NA NA 2.78 NA NA NA 5.26 NA NA NA NA NA NA NA 11.76 NA NA NA 4.35 NA NA NA NA NA NA NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Zn72D,RF_chr3L_16100887_16102721,I_chr3L_16105199_16105253 chr3L - chr3L_16100887_16101951 chr3L_16100886_16100887;chr3L_16101951_16101952 chr3L_16100787_16100886;chr3L_16101952_16102016 26.47 24.32 30.00 29.03 27.27 38.10 17.24 29.63 33.93 21.43 35.71 30.43 33.33 34.78 34.62 50.00 23.81 44.44 35.71 39.66 42.11 26.67 25.71 22.45 19.05 19.05 21.57 31.91 26.47 25.64 13.51 33.33 33.33 41.94 28.57 16.22 17.74 30.00 21.67 25.00 26.09 28.26 25.00 25.53 19.57 22.45 27.27 25.00 26.67 23.33 25.49 23.08 14.29 21.43 25.64 19.05 28.95 39.13 K alternative_donor Lerp chr3R - chr3R_22688433_22688824;chr3R_22688433_22688772;chr3R_22688433_22688494 chr3R_22688433_22688796 chr3R_22688359_22688432;chr3R_22688825_22688828 33.33 NA 40.00 28.57 NA NA 25.00 25.00 66.67 NA NA 25.00 NA 33.33 50.00 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 60.00 NA NA NA NA NA 40.00 NA NA NA NA NA NA NA 33.33 0.00 NA NA NA NA NA 14.29 NA NA NA K intron_retention Ddip2,I_chr3L_252776_253313 chr3L - chr3L_257057_257129 chr3L_257056_257057;chr3L_257129_257130 chr3L_256649_257056;chr3L_257130_257201 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 6.25 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA 7.41 NA 0.00 0.00 0.00 NA 0.00 4.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA NA K intron_retention CG9911 chrX - chrX_16188688_16188757 chrX_16188687_16188688;chrX_16188757_16188758 chrX_16188619_16188687;chrX_16188758_16188826 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.58 0.00 0.00 K alternative_donor vlc chr2R + chr2R_1589953_1590371;chr2R_1589799_1590371;chr2R_1589805_1590371;chr2R_1590318_1590371;chr2R_1589807_1590371;chr2R_1590294_1590371;chr2R_1589722_1590371;chr2R_1589693_1590371 chr2R_1589894_1590371 chr2R_1590372_1590451;chr2R_1589612_1589692 11.39 14.71 12.82 10.61 4.35 8.00 16.36 13.64 6.33 18.75 11.54 12.00 12.20 6.98 17.14 11.43 9.68 5.00 16.67 13.24 14.81 17.65 11.36 8.57 13.64 15.79 15.79 7.69 21.43 8.33 10.87 8.33 13.04 11.39 4.55 12.50 11.11 7.14 4.00 15.79 7.69 12.16 10.53 10.00 16.67 14.29 9.09 20.00 8.54 16.00 8.33 11.11 5.88 9.09 14.81 8.70 11.11 21.05 K intron_retention CG6448 chr2L + chr2L_22140972_22141594 chr2L_22140971_22140972;chr2L_22141594_22141595 chr2L_22140734_22140971;chr2L_22141595_22141768 0.00 NA NA 0.00 NA NA 0.00 5.56 0.00 NA NA 0.00 NA NA NA 4.17 NA NA NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 5.00 NA 0.00 NA NA NA NA 4.76 NA 0.00 NA 0.00 NA NA NA NA NA K jcn_only_AA CG2083,I_chr3L_2796679_2820058,noncoding_10229,RI_chr3L_2833393_2851558 chr3L - chr3L_2796679_2820058 chr3L_2796682_2820058 chr3L_2820059_2820158;chr3L_2796628_2796678 70.03 NA 75.00 77.78 65.38 60.00 64.71 65.67 75.00 NA 64.00 73.08 64.52 62.86 77.14 75.56 69.44 70.37 81.58 76.47 91.30 66.67 69.70 60.87 69.57 65.91 NA NA NA NA 72.73 NA 76.67 76.06 NA 68.00 78.12 89.66 NA 67.86 NA 76.00 53.33 66.67 NA 64.00 NA 85.00 71.67 NA 69.57 84.62 NA NA 80.00 NA NA 60.71 K alternative_acceptor CG13784,I_chr2L_7209439_7209522,I_chr2L_7219131_7219918 chr2L - chr2L_7209439_7209522 chr2L_7209463_7209522 chr2L_7209523_7209622;chr2L_7209373_7209438 100.00 93.75 100.00 94.74 100.00 100.00 96.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 92.86 100.00 100.00 100.00 100.00 95.45 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA None chrU + chrU_1183510_1184082 chrU_1183510_1184060 1.48 1.20 0.34 1.85 0.85 0.45 1.17 1.30 0.37 1.01 1.91 1.20 1.91 0.79 0.41 1.87 1.62 1.32 0.00 1.52 0.56 0.00 2.33 2.58 3.51 1.43 2.12 3.39 0.00 3.50 6.40 1.54 1.56 0.76 2.87 4.64 3.72 0.96 0.70 0.99 1.69 0.88 1.63 1.37 1.22 4.03 2.97 2.17 1.05 5.61 1.48 3.65 1.13 2.30 1.77 1.48 1.20 0.68 K jcn_only_AD E(bx),I_chr3L_246324_246699 chr3L - chr3L_246324_246438;chr3L_246324_246408;chr3L_246324_246794;chr3L_246324_246382;chr3L_246324_246388;chr3L_246324_246427 chr3L_246324_246885 chr3L_246224_246323;chr3L_246886_246901 6.55 10.64 7.41 10.39 7.50 6.67 2.56 3.95 4.90 7.69 11.36 6.59 5.66 1.82 11.76 7.69 0.00 2.04 7.14 7.38 10.20 2.82 5.71 3.03 9.38 10.34 7.55 2.70 3.85 2.13 19.12 NA 6.45 8.14 0.00 5.66 5.88 0.00 6.52 2.74 NA 11.11 10.20 0.00 NA NA NA 7.14 14.14 NA 9.86 0.00 NA NA 0.00 NA NA NA K intron_retention Atpalpha,I_chr3R_16783890_16785070,I_chr3R_16788018_16789830,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16783890_16789446 chr3R_16783889_16783890;chr3R_16789446_16789447 chr3R_16783790_16783889;chr3R_16789447_16789578 1.31 1.59 0.00 1.67 0.00 0.00 1.31 1.37 1.95 0.00 0.00 8.33 0.00 5.00 2.99 3.48 0.98 0.00 3.66 3.08 0.00 0.00 0.00 2.50 2.56 0.00 0.00 6.25 6.25 0.00 5.00 0.00 0.00 3.03 0.00 0.00 7.32 0.00 0.00 1.45 0.00 1.85 3.23 0.00 0.00 0.00 5.26 2.78 2.56 9.26 0.00 5.26 0.00 0.00 3.37 5.56 7.41 0.00 K intron_retention CG5522 chr2R + chr2R_12677421_12678243 chr2R_12677420_12677421;chr2R_12678243_12678244 chr2R_12677217_12677420;chr2R_12678244_12679955 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.35 0.00 0.00 0.00 0.58 0.00 0.54 0.00 1.63 0.00 0.00 0.94 0.87 0.00 0.00 0.66 0.43 0.65 0.55 0.82 1.31 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 K jcn_only_AA CG31720,F_chr2L_10234951_10235484 chr2L - chr2L_10236292_10236374;chr2L_10236287_10236374 chr2L_10236257_10236374 chr2L_10236375_10236547;chr2L_10236031_10236256 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_16982134_16982890;chr3R_16982134_16983164;chr3R_16982134_16983218;chr3R_16982134_16983159 chr3R_16982134_16983336 chr3R_16982126_16982133;chr3R_16983337_16983376 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 3.85 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 11.11 0.00 0.00 0.00 0.00 7.14 K alternative_acceptor CG31301,I_chr3R_11172776_11172930,RI_chr3R_11173123_11173185 chr3R + chr3R_11173128_11173198 chr3R_11173128_11173185 chr3R_11173059_11173127;chr3R_11173199_11173254 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Prp8,I_chr2R_8048572_8048683,psnoRNA:prp8-a,I_chr2R_8050245_8050389 chr2R - chr2R_8048572_8048851 chr2R_8048572_8048683 chr2R_8048472_8048571;chr2R_8048852_8048951 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.41 0.00 0.76 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 1.05 2.99 1.03 1.01 0.00 0.00 0.00 0.00 2.08 0.00 K alternative_acceptor CG7120,I_chr3L_8393044_8393104,I_chr3L_8393044_8393116 chr3L + chr3L_8393044_8393181 chr3L_8393044_8393104 chr3L_8392944_8393043;chr3L_8393182_8393204 0.00 NA NA NA NA NA 5.88 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 36.36 4.76 5.00 NA NA 0.00 NA NA NA 7.69 NA NA NA NA 12.50 0.00 NA 0.00 0.00 NA 4.55 NA NA NA 0.00 NA NA 5.00 NA NA NA NA NA NA NA 0.00 0.00 K alternative_acceptor plexA,I_chr4_1035140_1035208,I_chr4_1035153_1035403,RI_chr4_1036247_1047588,RI_chr4_1040642_1047395,RF_chr4_1044307_1047399 chr4 - chr4_1035140_1035208 chr4_1035153_1035208 chr4_1035209_1035277;chr4_1035081_1035139 98.51 97.22 100.00 98.55 100.00 100.00 94.67 98.68 95.70 92.31 93.33 94.44 100.00 100.00 91.30 98.51 100.00 100.00 98.11 98.67 100.00 100.00 100.00 100.00 100.00 96.77 97.83 100.00 100.00 95.83 98.08 94.74 100.00 95.83 95.24 100.00 96.15 100.00 96.55 93.33 100.00 98.67 95.24 96.67 100.00 100.00 100.00 90.00 91.03 95.24 97.62 100.00 100.00 95.83 97.92 97.30 94.23 100.00 K jcn_only_AD Srp68 chr3L + chr3L_8968321_8968424 chr3L_8968355_8968424 chr3L_8968425_8968774;chr3L_8968194_8968320 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.96 1.28 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 2.86 1.80 1.33 0.00 0.69 1.23 0.00 0.00 0.60 0.00 0.86 1.75 0.00 0.00 0.00 1.32 0.00 1.00 1.30 0.00 0.00 0.00 0.00 0.00 1.27 0.00 2.86 0.88 0.84 1.14 K intron_retention Fs(2)Ket,I_chr2L_20738976_20749527 chr2L + chr2L_20736345_20736417 chr2L_20736344_20736345;chr2L_20736417_20736418 chr2L_20736103_20736344;chr2L_20736418_20737446 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention skap chr3R + chr3R_4767555_4767622 chr3R_4767554_4767555;chr3R_4767622_4767623 chr3R_4767130_4767554;chr3R_4767623_4767792 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1399,I_chr2R_3574133_3574191 chr2R - chr2R_3574133_3574212 chr2R_3574132_3574133;chr2R_3574212_3574213 chr2R_3574049_3574132;chr2R_3574213_3574291 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 6.15 0.00 3.85 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3R_16141663_16144698,CG5077,I_chr3R_16147605_16147670 chr3R + chr3R_16147436_16147489 chr3R_16147435_16147436;chr3R_16147489_16147490 chr3R_16147424_16147435;chr3R_16147490_16147602 99.66 99.52 99.53 99.73 99.54 100.00 100.00 98.92 99.59 99.38 100.00 100.00 99.40 100.00 100.00 99.67 99.56 100.00 100.00 99.76 100.00 99.70 99.60 99.57 99.30 99.24 100.00 99.38 99.72 99.69 99.60 99.53 97.80 99.71 99.41 100.00 99.62 98.55 99.62 99.83 100.00 99.77 100.00 99.67 99.66 99.47 100.00 99.84 99.54 99.58 99.63 100.00 97.67 100.00 99.63 100.00 99.42 99.62 K intron_retention CG13585,I_chr2R_20419710_20419962,E_chr2R_20420167_20420418 chr2R + chr2R_20419624_20419962 chr2R_20419623_20419624;chr2R_20419962_20419963 chr2R_20419610_20419623;chr2R_20419963_20420062 88.89 NA NA NA NA NA NA NA 76.47 NA 92.86 92.31 NA NA NA NA NA 93.75 NA 85.71 92.31 100.00 NA NA NA NA NA NA NA NA NA NA 90.91 88.89 NA NA NA NA 77.78 NA NA 83.33 NA NA 87.50 75.00 NA 88.89 81.25 NA NA NA 88.89 NA NA NA 94.12 80.00 K intron_retention Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11841343_11841406 chr2R_11841342_11841343;chr2R_11841406_11841407 chr2R_11840960_11841342;chr2R_11841407_11842191 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA Cap-D3,I_chr2L_5534987_5535054 chr2L + chr2L_5534987_5535054 chr2L_5534987_5535049 chr2L_5534887_5534986;chr2L_5535055_5535154 100.00 100.00 96.67 100.00 97.30 96.55 100.00 98.11 100.00 NA 100.00 100.00 NA 93.10 100.00 97.30 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 NA 97.06 100.00 93.33 100.00 100.00 94.29 100.00 100.00 97.96 NA 100.00 97.14 NA 97.96 97.87 95.65 98.78 100.00 100.00 100.00 100.00 100.00 100.00 98.04 94.74 97.67 95.83 NA NA 96.97 100.00 100.00 96.36 K intron_retention ca,CG7802 chr3R + chr3R_25636531_25636585 chr3R_25636530_25636531;chr3R_25636585_25636586 chr3R_25635988_25636530;chr3R_25636586_25636889 0.00 0.00 0.00 4.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17528,I_chr2R_705620_705713,I_chr2R_705649_705720,I_chr2R_706735_711443,I_chr2R_707374_711443 chr2R - chr2R_705649_705713 chr2R_705648_705649;chr2R_705713_705714 chr2R_705549_705648;chr2R_705714_705813 0.00 0.00 0.00 0.00 0.00 3.23 1.56 5.88 3.61 0.00 0.00 4.23 2.63 10.00 0.00 6.10 0.00 0.00 1.82 0.00 0.00 0.00 3.33 0.00 0.00 6.06 6.25 NA 0.00 0.00 5.00 0.00 0.00 4.05 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 3.03 4.55 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention dah,I_chrX_15223901_15223968,I_chrX_15232958_15233665 chrX + chrX_15223901_15223964 chrX_15223900_15223901;chrX_15223964_15223965 chrX_15223801_15223900;chrX_15223965_15224082 0.00 NA 14.29 0.00 NA 23.08 13.33 NA 2.94 NA NA 3.45 NA NA 0.00 0.00 NA NA 0.00 8.11 NA NA 0.00 0.00 NA NA 5.56 NA NA NA 6.67 0.00 NA 9.52 NA NA 0.00 0.00 0.00 0.00 7.14 4.17 NA NA 0.00 NA 0.00 0.00 9.52 5.88 0.00 5.88 NA NA 0.00 0.00 0.00 NA K intron_retention CG17490 chr2L + chr2L_22431120_22432684 chr2L_22431119_22431120;chr2L_22432684_22432685 chr2L_22431022_22431119;chr2L_22432685_22433056 100.00 100.00 100.00 96.30 100.00 100.00 100.00 91.67 98.33 100.00 100.00 98.00 100.00 92.00 96.00 100.00 100.00 96.30 97.06 97.73 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 90.91 95.24 96.15 97.22 100.00 96.00 100.00 100.00 98.21 96.15 96.67 100.00 92.00 93.75 100.00 95.45 96.67 100.00 K jcn_only_AA HLH106,RI_chr3L_19787260_19787323 chr3L + chr3L_19787260_19787773;chr3L_19787260_19787998;chr3L_19787260_19787663 chr3L_19787260_19787323 chr3L_19787254_19787259 8.62 3.45 14.29 6.19 4.76 7.89 21.74 4.90 12.00 NA 14.29 8.89 7.50 10.00 15.00 2.47 8.11 22.86 8.62 7.69 15.79 21.88 4.00 8.70 NA 4.44 6.90 NA 2.86 7.41 13.46 14.81 10.71 12.05 20.00 NA 8.00 NA NA 13.16 NA 6.98 8.33 8.33 NA 3.70 NA 9.68 6.45 NA 11.11 NA NA NA 12.12 NA 13.64 4.76 K intron_retention CG7770 chr3L + chr3L_19917308_19917391 chr3L_19917307_19917308;chr3L_19917391_19917392 chr3L_19917082_19917307;chr3L_19917392_19917466 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.55 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 K jcn_only_AA CG11790,CG11791 chr3R + chr3R_20875669_20876354;chr3R_20875669_20876902 chr3R_20875669_20876344 chr3R_20875600_20875668;chr3R_20876903_20877278 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 5.00 NA NA 5.00 0.00 NA NA 0.00 NA 0.00 NA NA 4.55 NA NA NA 0.00 0.00 K jcn_only_AD CG2091,sec8 chr3R - chr3R_1579962_1580025 chr3R_1579962_1580022 chr3R_1579073_1579961;chr3R_1580026_1580169 100.00 NA 95.83 96.30 NA NA NA 100.00 100.00 NA 100.00 96.97 NA 100.00 NA 96.88 90.48 95.24 100.00 97.73 NA 100.00 96.43 NA NA 100.00 NA NA NA NA 95.83 100.00 100.00 100.00 NA 100.00 NA NA NA 93.10 100.00 97.14 100.00 NA 100.00 100.00 100.00 93.75 94.44 100.00 100.00 96.77 NA NA NA 100.00 NA 100.00 K cassette spri,I_chrX_10404621_10469422,I_chrX_10413811_10440661,I_chrX_10417598_10440661 chrX - chrX_10404621_10469422 chrX_10404621_10413380;chrX_10413811_10469422 chrX_10413381_10413810 chrX_10404521_10404620;chrX_10469423_10469435 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.25 98.08 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG1494 chrX + chrX_21160771_21160922 chrX_21160770_21160771;chrX_21160922_21160923 chrX_21160430_21160770;chrX_21160923_21161220 13.46 13.46 12.07 20.79 8.06 6.56 10.62 14.81 16.78 12.31 8.77 16.79 8.77 8.96 6.52 11.88 15.15 12.28 13.92 11.31 12.00 41.43 13.33 13.43 15.69 8.33 12.82 11.90 29.79 14.29 20.18 20.43 23.81 12.68 19.61 20.27 19.18 19.67 14.29 15.17 6.90 13.22 14.58 14.47 13.24 8.80 7.27 14.15 12.16 20.00 14.29 15.56 6.56 19.51 13.13 19.15 15.91 8.53 K jcn_only_AD miple2,I_chr3L_271508_273549,I_chr3L_271695_273549,I_chr3L_271922_273549,I_chr3L_274251_274594 chr3L + chr3L_271792_273549;chr3L_271217_273549;chr3L_273391_273549 chr3L_271695_273549 chr3L_273550_273649;chr3L_271209_271216 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 2.63 1.59 0.00 0.00 0.00 3.33 0.00 0.00 0.00 3.96 0.00 0.84 0.78 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG12945,I_chr3R_5615604_5615859,I_chr3R_5615807_5615858,RI_chr3R_5616467_5616560 chr3R - chr3R_5615604_5615675 chr3R_5615603_5615604;chr3R_5615675_5615676 chr3R_5615504_5615603;chr3R_5615676_5615788 2.69 0.00 0.00 5.97 4.76 0.00 4.62 4.55 4.69 NA 0.00 8.33 0.00 0.00 6.90 1.92 0.00 0.00 0.00 0.00 0.00 NA 12.00 4.55 6.67 7.50 18.18 18.18 3.85 8.33 0.00 12.50 0.00 6.49 0.00 0.00 NA NA 0.00 3.45 13.64 1.47 0.00 0.00 0.00 0.00 NA 3.85 5.00 NA 4.55 5.00 NA 0.00 6.25 0.00 5.88 0.00 K jcn_only_AA Utx chr2L - chr2L_10275385_10275448 chr2L_10275388_10275448 chr2L_10275449_10275629;chr2L_10275127_10275384 78.34 81.08 88.00 70.18 87.50 76.19 82.98 88.33 70.77 NA NA 68.57 61.90 67.86 80.00 71.70 80.77 60.87 83.87 68.63 63.64 78.12 76.32 66.67 90.91 87.50 80.95 NA 81.82 84.00 83.33 NA 80.77 72.55 77.78 92.31 70.00 84.00 76.00 75.56 69.57 81.13 57.14 86.21 NA 80.95 72.00 72.50 79.37 79.41 70.73 91.67 NA NA 75.00 76.67 81.82 78.57 K jcn_only_AA wge chr3R - chr3R_18539090_18539306;chr3R_18539117_18539306 chr3R_18539087_18539306 chr3R_18539307_18539565;chr3R_18538527_18539086 0.00 1.85 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 1.74 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.63 2.00 0.00 0.00 1.56 2.04 0.00 3.03 3.45 0.00 0.00 1.67 0.00 0.00 0.00 3.03 0.00 2.33 0.00 1.03 1.03 0.00 0.65 0.00 0.00 2.00 2.13 0.00 0.00 0.74 0.00 0.00 2.44 2.08 0.00 1.47 0.00 0.00 2.17 K intron_retention cno,I_chr3R_999718_999986,I_chr3R_999737_999777,I_chr3R_1011213_1011336 chr3R - chr3R_1011213_1011336 chr3R_1011212_1011213;chr3R_1011336_1011337 chr3R_1011113_1011212;chr3R_1011337_1011348 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 15.00 NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor 14-3-3epsilon,I_chr3R_14068632_14073155,RI_chr3R_14074062_14074138,I_chr3R_14074016_14074138 chr3R + chr3R_14073874_14073936;chr3R_14073874_14073954;chr3R_14073874_14073939 chr3R_14073874_14073942 chr3R_14073693_14073873;chr3R_14073955_14074015 18.67 19.47 18.30 20.29 17.22 21.43 20.63 19.40 18.48 20.80 20.47 20.36 18.25 17.12 18.55 16.67 17.66 19.40 17.29 21.72 18.03 16.86 19.17 16.91 22.24 19.34 13.35 22.91 21.63 17.73 18.73 18.42 19.09 19.33 19.46 18.38 19.27 17.74 17.95 17.37 16.07 19.44 18.18 16.28 20.16 18.37 17.20 18.67 18.03 16.69 16.61 18.84 19.60 19.13 18.89 19.57 16.93 21.74 K intron_retention MCPH1,RI_chr2R_7790917_7791377 chr2R - chr2R_7784038_7784100 chr2R_7784037_7784038;chr2R_7784100_7784101 chr2R_7783414_7784037;chr2R_7784101_7784319 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 1.67 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 K cassette Pli,I_chr3R_19691378_19715415 chr3R - chr3R_19691378_19715415 chr3R_19691378_19714778;chr3R_19714914_19715415 chr3R_19714779_19714913 chr3R_19691285_19691377;chr3R_19715416_19715515 100.00 100.00 100.00 100.00 88.89 100.00 96.88 96.30 100.00 100.00 100.00 100.00 100.00 91.67 94.12 100.00 100.00 100.00 100.00 96.30 100.00 94.44 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 96.00 100.00 96.67 100.00 100.00 100.00 100.00 95.45 100.00 93.33 100.00 NA 100.00 94.12 100.00 100.00 100.00 K jcn_only_AD jim,I_chr3L_22791582_22791898 chr3L - chr3L_22791579_22791901 chr3L_22791579_22791898 chr3L_22791482_22791578;chr3L_22791902_22791998 87.95 85.45 85.51 85.34 84.00 80.36 90.48 83.78 86.79 81.82 93.75 88.97 86.36 88.52 88.71 81.48 81.25 89.13 94.00 84.71 92.00 87.59 88.89 91.25 91.76 82.35 84.06 81.82 90.91 95.56 89.13 80.77 78.00 86.49 96.43 92.00 88.12 89.29 89.21 86.14 NA 85.71 88.10 90.32 76.60 90.91 91.07 90.38 87.91 91.67 86.08 80.30 84.44 92.73 87.32 83.33 88.00 89.74 K alternative_donor CG14516,Pglym78 chr3R + chr3R_24964872_24967931 chr3R_24964918_24967931 chr3R_24967932_24967973;chr3R_24964669_24964871 88.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA K intron_retention CG8360,CG8353 chr2L + chr2L_8214488_8214671 chr2L_8214487_8214488;chr2L_8214671_8214672 chr2L_8214221_8214487;chr2L_8214672_8215177 40.00 NA NA NA NA NA 35.29 NA NA NA NA NA NA NA NA 40.00 NA NA NA 45.45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754284_15755268 chrX_15754283_15754284;chrX_15755268_15755269 chrX_15754256_15754283;chrX_15755269_15755284 88.89 91.67 88.89 77.78 NA 88.89 85.19 96.15 90.24 NA 90.00 97.22 96.15 78.26 90.91 83.87 92.31 90.91 92.86 93.75 87.50 64.71 77.78 90.91 84.62 66.67 92.86 NA 90.00 83.33 76.92 NA 83.33 88.89 84.62 73.68 100.00 76.92 NA 89.47 NA 86.96 81.82 83.33 NA 87.50 90.91 87.50 90.00 88.89 100.00 90.00 NA NA 92.31 NA 77.78 60.00 K intron_retention cwo,noncoding_15870 chr3R + chr3R_6222543_6223084 chr3R_6222542_6222543;chr3R_6223084_6223085 chr3R_6222454_6222542;chr3R_6223085_6223406 17.26 33.33 19.35 10.26 10.71 9.09 30.77 18.42 16.07 6.45 16.67 29.41 18.18 33.33 21.43 32.35 9.52 17.65 22.73 15.69 19.05 14.71 17.02 21.43 19.35 11.76 8.33 5.88 26.67 19.15 15.00 11.76 13.16 21.88 18.52 16.67 10.00 17.50 18.75 16.00 25.00 17.78 23.53 19.30 10.53 9.09 14.71 16.33 20.00 13.95 17.50 11.11 21.05 NA 25.93 5.56 10.00 14.29 K intron_retention CG12025,I_chr3L_1866550_1867140,I_chr3L_1866794_1867140,I_chr3L_1866804_1867140 chr3L + chr3L_1865918_1867140 chr3L_1865917_1865918;chr3L_1867140_1867141 chr3L_1865446_1865917;chr3L_1867141_1867240 3.09 0.88 3.09 1.68 0.00 2.94 5.08 2.26 3.07 1.52 3.12 3.47 3.28 6.06 2.15 7.37 0.00 4.35 5.88 3.83 2.41 7.55 2.90 2.82 3.57 1.37 4.23 11.61 6.52 0.00 3.41 1.41 2.70 3.20 2.88 5.15 2.84 3.10 3.03 3.87 3.61 2.48 5.36 2.33 0.91 4.08 3.60 3.96 3.12 3.70 2.38 1.25 1.94 1.64 0.98 3.96 3.70 2.74 K intron_retention CG9914 chrX - chrX_16202202_16202270 chrX_16202201_16202202;chrX_16202270_16202271 chrX_16201823_16202201;chrX_16202271_16202727 72.73 NA NA NA NA NA 88.89 90.91 70.00 NA NA 60.00 NA NA 66.67 NA NA 77.78 72.73 82.35 NA NA NA NA NA NA NA NA NA NA 53.33 NA NA 72.73 NA NA NA NA 88.89 69.23 NA 66.67 NA NA NA NA NA NA 83.33 NA NA NA NA NA 63.64 NA NA NA K intron_retention M(2)21AB,I_chr2L_110878_111037,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_110878_112689 chr2L_110877_110878;chr2L_112689_112690 chr2L_110778_110877;chr2L_112690_112789 8.33 4.17 10.00 6.56 0.00 8.33 12.99 14.63 12.20 2.94 13.33 11.11 12.12 16.67 12.50 13.16 13.33 17.65 16.00 10.87 12.50 7.41 7.25 7.69 7.41 8.70 4.44 3.85 11.32 6.06 10.81 0.00 5.56 13.16 13.64 7.14 6.67 4.17 8.54 9.23 0.00 5.56 0.00 5.08 2.56 12.50 0.00 13.89 15.38 15.62 7.14 6.67 6.67 0.00 5.56 8.33 14.29 NA K jcn_only_AA CG8042,RI_chr3L_7966678_7966749,I_chr3L_7967277_7967400,I_chr3L_7968788_7968857 chr3L - chr3L_7966678_7966749 chr3L_7966684_7966749 chr3L_7966750_7966849;chr3L_7966578_7966677 100.00 100.00 100.00 98.46 100.00 100.00 99.29 100.00 100.00 99.17 98.75 98.87 100.00 100.00 99.25 100.00 100.00 98.88 100.00 100.00 100.00 98.32 100.00 100.00 100.00 100.00 99.09 98.31 99.66 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.81 100.00 100.00 99.24 100.00 100.00 100.00 98.46 99.59 99.62 99.09 99.67 100.00 99.35 98.99 98.51 98.43 100.00 99.20 100.00 100.00 99.79 K jcn_only_AA chic,I_chr2L_5976783_5978547,RI_chr2L_5976783_5980950,I_chr2L_5978244_5979411,RI_chr2L_5979705_5980734 chr2L - chr2L_5976783_5979411 chr2L_5978244_5979411 chr2L_5979412_5979511;chr2L_5976683_5976782 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.04 0.04 0.04 0.00 0.11 0.00 0.03 0.00 0.02 0.00 0.00 0.03 0.00 0.25 0.00 0.00 0.00 0.08 0.10 0.09 0.00 0.02 0.03 0.00 0.09 0.00 0.02 0.00 0.00 0.00 0.06 0.00 0.04 0.00 0.03 0.00 0.04 0.00 0.00 0.00 0.06 0.00 0.00 K alternative_acceptor RN-tre chr2R - chr2R_9873550_9875877 chr2R_9873601_9875877 chr2R_9875878_9875942;chr2R_9873495_9873549 99.06 100.00 98.00 98.96 100.00 100.00 100.00 98.84 98.98 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.07 97.56 99.06 98.68 98.61 97.44 100.00 98.46 100.00 100.00 98.31 100.00 98.15 96.77 98.77 98.21 100.00 98.81 98.41 98.89 97.75 100.00 100.00 100.00 100.00 100.00 98.73 100.00 98.46 97.37 97.92 98.75 100.00 97.37 100.00 98.41 98.39 100.00 96.43 K intron_retention CG3209,RI_chr2R_19957766_19960227,I_chr2R_19959163_19959513 chr2R + chr2R_19956858_19957261 chr2R_19956857_19956858;chr2R_19957261_19957262 chr2R_19956558_19956857;chr2R_19957262_19957465 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 1.74 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention eas,REI_chrX_16172581_16175010,REI_chrX_16172581_16177702,RI_chrX_16173003_16173054 chrX + chrX_16172581_16174918 chrX_16172580_16172581;chrX_16174918_16174919 chrX_16172481_16172580;chrX_16174919_16175008 40.28 66.67 50.00 NA NA NA 47.06 33.33 38.89 NA NA 35.48 33.33 43.75 25.00 30.56 38.46 66.67 27.27 42.86 42.86 73.33 38.10 53.33 41.67 35.71 36.36 NA NA 70.00 33.33 50.00 86.67 37.93 25.00 72.73 55.56 NA NA 35.29 46.15 25.81 33.33 NA NA 53.85 60.00 64.29 30.56 46.67 38.89 30.77 NA NA 29.17 22.22 61.54 54.55 K jcn_only_AD AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9003728_9004854;chrX_9003790_9004854;chrX_9003918_9004854 chrX_9004021_9004854 chrX_9004855_9004862;chrX_9003721_9003727 1.92 NA NA 0.00 NA NA 0.00 9.52 0.00 NA NA 1.92 NA 3.57 0.00 2.33 NA NA 3.57 3.70 NA NA 0.00 NA NA 0.00 NA NA NA NA 5.88 NA NA 2.94 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 5.88 NA NA NA N jcn_only_AA CkIIalpha,I_chr3L_23092989_23093344,RI_chr3L_23094196_23095221 chr3L + chr3L_23092824_23093344;chr3L_23092824_23092891 chr3L_23092824_23093319 chr3L_23092680_23092823;chr3L_23093345_23093444 20.00 NA NA NA NA NA 19.35 NA 20.00 NA NA NA NA NA NA 21.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention noncoding_19065,CG42503,Mocs2 chr3R - chr3R_20950864_20950893 chr3R_20950863_20950864;chr3R_20950893_20950894 chr3R_20950618_20950863;chr3R_20950894_20951248 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.87 99.84 100.00 99.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.81 100.00 100.00 100.00 99.92 K intron_retention Cp110,I_chrX_21890195_21895316,I_chrX_21900456_21904601 chrX + chrX_21887472_21887778 chrX_21887471_21887472;chrX_21887778_21887779 chrX_21887238_21887471;chrX_21887779_21887910 4.35 NA 0.00 4.00 NA 0.00 NA 13.33 7.55 NA 6.67 14.71 6.67 10.53 8.82 8.33 0.00 7.41 9.09 10.64 0.00 NA 0.00 5.88 0.00 7.69 4.35 NA NA 9.09 NA 0.00 3.23 16.67 14.29 0.00 0.00 12.50 0.00 0.00 0.00 11.63 13.33 11.76 0.00 0.00 0.00 5.56 12.07 0.00 3.57 0.00 11.11 6.25 3.23 0.00 2.56 0.00 K jcn_only_AD eIF3-S9,CG18432 chr2R + chr2R_13424059_13424200 chr2R_13424085_13424200 chr2R_13424201_13424516;chr2R_13423960_13424058 100.00 100.00 100.00 100.00 99.68 100.00 100.00 100.00 99.85 100.00 100.00 99.85 100.00 100.00 100.00 100.00 100.00 99.71 100.00 99.89 100.00 99.82 100.00 99.83 100.00 99.74 100.00 99.65 100.00 99.75 99.03 100.00 99.58 99.83 100.00 99.83 99.83 100.00 99.85 99.75 99.82 100.00 100.00 99.58 100.00 100.00 99.85 100.00 99.78 100.00 99.84 99.70 NA 100.00 99.80 100.00 100.00 100.00 K intron_retention CG8176,I_chr3R_5348614_5348964 chr3R + chr3R_5347958_5348016 chr3R_5347957_5347958;chr3R_5348016_5348017 chr3R_5347774_5347957;chr3R_5348017_5348436 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA gd,I_chrX_11881464_11881506 chrX - chrX_11881455_11881506 chrX_11881464_11881506 chrX_11881507_11881606;chrX_11881364_11881454 5.36 NA NA NA NA NA 3.70 NA 9.09 NA NA 4.17 NA NA NA NA NA NA NA NA NA NA 0.00 5.00 NA NA 5.00 NA 7.41 NA 4.65 NA 9.09 NA 12.00 7.41 5.71 NA 4.17 4.00 NA 8.00 NA NA 4.76 NA NA 4.17 NA NA 12.00 10.00 NA NA NA NA NA 12.00 K intron_retention CG31012,I_chr3R_26643930_26646602 chr3R + chr3R_26635086_26642596 chr3R_26635085_26635086;chr3R_26642596_26642597 chr3R_26635039_26635085;chr3R_26642597_26642846 3.33 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA K intron_retention Hil chr2R - chr2R_16502439_16505571 chr2R_16502438_16502439;chr2R_16505571_16505572 chr2R_16502011_16502438;chr2R_16505572_16505719 10.53 NA NA NA NA NA NA NA 7.14 0.00 NA 20.00 NA NA NA NA NA NA NA 13.04 NA NA 10.53 NA NA NA NA NA 0.00 NA NA NA 5.71 NA 10.00 12.50 NA NA NA 15.79 6.67 13.33 NA NA NA 0.00 NA 12.50 13.33 NA NA NA NA NA 25.00 NA NA 4.17 K intron_retention nrv2,I_chr2L_6791842_6791904,I_chr2L_6791842_6792033,I_chr2L_6791842_6794492,I_chr2L_6793397_6794492,I_chr2L_6793405_6793916,I_chr2L_6793405_6794499,I_chr2L_6793684_6794492 chr2L - chr2L_6791842_6792033 chr2L_6791841_6791842;chr2L_6792033_6792034 chr2L_6791742_6791841;chr2L_6792034_6792062 88.89 88.24 87.50 90.00 100.00 93.75 100.00 95.00 82.14 90.91 NA 86.21 88.89 88.89 88.89 94.12 NA NA 91.67 95.83 100.00 75.00 83.33 88.00 72.22 93.33 96.00 NA 100.00 90.91 88.24 77.78 84.21 94.12 81.82 85.71 84.62 77.78 78.26 95.00 78.95 79.41 91.67 82.61 90.91 85.00 76.92 95.45 93.10 88.24 73.68 94.12 88.89 90.00 95.24 100.00 69.23 84.62 K alternative_acceptor CG4705 chr2L + chr2L_11092727_11092781 chr2L_11092727_11092771 chr2L_11092553_11092726;chr2L_11092782_11094635 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 K jcn_only_AD Dsp1,I_chrX_16231287_16231413 chrX + chrX_16227752_16228333;chrX_16228273_16228333;chrX_16227677_16228333;chrX_16227797_16228333 chrX_16227804_16228333 chrX_16228334_16228446;chrX_16227667_16227676 10.00 NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG9776 chr3R - chr3R_153740_153858 chr3R_153800_153858 chr3R_153859_154129;chr3R_153532_153739 2.04 2.86 3.70 5.88 0.00 2.00 10.17 0.93 0.00 4.55 2.86 0.00 4.08 3.85 0.00 1.61 5.00 1.52 1.79 1.30 2.33 3.03 2.11 1.06 0.00 1.75 1.06 2.86 0.00 2.86 3.30 2.38 1.85 1.41 2.04 0.00 3.53 1.33 2.50 0.00 1.69 2.08 2.70 0.00 2.13 3.41 0.90 7.84 0.00 0.00 3.57 5.45 2.56 0.00 6.06 2.02 1.04 4.08 K intron_retention CG3500,RI_chr2R_19244231_19244378 chr2R - chr2R_19244194_19244378 chr2R_19244193_19244194;chr2R_19244378_19244379 chr2R_19244131_19244193;chr2R_19244379_19244478 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG8963,I_chr2R_12906431_12906583,I_chr2R_12906930_12906989 chr2R - chr2R_12906827_12906937;chr2R_12906431_12906937 chr2R_12906855_12906937 chr2R_12906938_12907019 30.86 37.50 36.00 24.62 NA 36.36 25.00 34.21 49.18 NA NA 32.69 24.24 16.67 23.81 33.33 48.28 NA 21.62 23.08 NA 45.71 18.42 30.77 NA NA NA 23.68 NA 23.08 4.76 NA 16.67 20.45 NA 4.55 37.50 28.57 NA 32.61 NA 30.95 40.91 43.75 NA 54.55 27.27 40.91 34.04 44.44 40.54 23.81 NA NA 37.50 NA 29.17 25.00 K intron_retention eff,I_chr3R_10559606_10563141,REI_chr3R_10560141_10566101,RE_chr3R_10563206_10565464,I_chr3R_10563206_10566728 chr3R - chr3R_10563206_10566101 chr3R_10563205_10563206;chr3R_10566101_10566102 chr3R_10563142_10563205;chr3R_10566102_10566201 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.65 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.74 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.48 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon CG18170,CG33230,ABCB7 chr3L + chr3L_1618618_1620427 chr3L_1618618_1618847 chr3L_1620428_1621042 chr3L_1618848_1620269 chr3L_1618392_1618617 60.13 53.68 56.38 66.96 51.39 53.01 63.77 65.79 61.17 69.84 58.90 57.41 61.63 60.00 58.42 73.19 60.49 81.25 62.64 61.35 62.50 82.35 54.00 56.15 54.84 59.09 60.62 76.17 64.43 58.93 57.14 60.64 66.08 65.35 58.43 59.26 49.29 48.84 50.96 55.45 65.69 57.54 62.50 55.10 63.55 64.44 52.03 63.58 60.13 65.04 54.55 60.26 52.81 61.04 58.72 54.72 58.52 61.83 K intron_retention RnrL,I_chr2L_10327455_10327630 chr2L - chr2L_10327455_10327686 chr2L_10327454_10327455;chr2L_10327686_10327687 chr2L_10327355_10327454;chr2L_10327687_10327730 0.65 0.65 1.32 0.87 0.00 0.00 0.83 0.62 0.66 0.00 0.00 1.40 1.36 1.50 1.17 0.00 0.93 0.00 0.00 0.94 0.00 1.53 0.00 1.38 0.00 0.00 2.53 6.19 4.08 1.52 2.68 0.00 0.00 1.15 0.00 2.76 1.53 0.75 1.03 0.00 1.40 0.00 0.00 0.00 0.00 2.70 0.00 1.07 0.94 0.00 1.00 0.00 0.00 0.00 0.56 0.00 0.00 1.57 K intron_retention RpL13,E_chr2L_9967706_9968364 chr2L + chr2L_9968248_9968316 chr2L_9968247_9968248;chr2L_9968316_9968317 chr2L_9967939_9968247;chr2L_9968317_9968758 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.03 0.02 0.13 0.00 0.01 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.04 0.06 0.00 0.07 0.00 0.07 0.00 0.17 0.57 0.03 0.00 0.02 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.02 0.04 0.04 0.00 0.00 0.00 0.00 0.06 0.03 0.00 0.04 0.02 0.04 0.05 0.02 0.00 0.00 0.00 0.04 0.00 K intron_retention Cyp28a5 chr2L + chr2L_13978108_13978194 chr2L_13978107_13978108;chr2L_13978194_13978195 chr2L_13978003_13978107;chr2L_13978195_13978741 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 K intron_retention Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5006553_5008568 chr2R_5006552_5006553;chr2R_5008568_5008569 chr2R_5006405_5006552;chr2R_5008569_5008598 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG16971,I_chr3L_225856_225909,I_chr3L_225919_225983,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_225919_226219;chr3L_225919_225983 chr3L_225919_226004 chr3L_225910_225918;chr3L_226220_226256 61.05 54.46 61.34 NA 58.37 61.05 74.38 NA 61.10 68.45 57.20 60.43 59.51 67.53 48.15 61.89 59.72 62.19 74.85 76.44 58.65 43.18 55.26 64.90 57.61 47.80 51.91 59.93 63.71 63.61 61.99 67.27 70.29 61.13 46.23 NA 62.92 60.55 67.46 74.50 49.66 76.96 47.01 54.55 59.48 68.36 62.32 74.17 74.24 60.44 57.68 52.49 63.11 52.71 78.00 NA 53.44 41.42 K intron_retention sec31,I_chr2R_4783150_4783708 chr2R + chr2R_4785828_4785893 chr2R_4785827_4785828;chr2R_4785893_4785894 chr2R_4785756_4785827;chr2R_4785894_4786303 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 K intron_retention gish,RI_chr3R_12118557_12122383 chr3R + chr3R_12118557_12122383 chr3R_12118556_12118557;chr3R_12122383_12122384 chr3R_12118496_12118556;chr3R_12122384_12122483 44.60 NA 36.36 26.09 NA NA 47.83 29.63 62.07 NA NA 75.00 30.77 50.00 NA 31.03 50.00 NA 36.36 43.75 NA 25.00 NA 60.00 NA NA NA NA NA NA 46.15 NA NA 45.45 NA NA NA NA NA NA NA 55.56 NA 60.00 NA NA NA NA 27.78 NA 30.77 NA NA NA NA NA NA NA K alternative_last_exon Gprk1,R_chr2R_238724_265876,RI_chr2R_357455_358274 chr2R - chr2R_210444_223881,chr2R_210463_223881 chr2R_212146_223881 chr2R_210281_210443 chr2R_212077_212145 chr2R_223882_223902 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG6448,I_chr2L_22141769_22141830 chr2L + chr2L_22141769_22141833 chr2L_22141769_22141830 chr2L_22141669_22141768;chr2L_22141834_22141930 0.00 NA 0.00 7.14 NA NA 4.17 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 4.00 NA 0.00 5.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 NA 8.33 0.00 NA 4.17 0.00 NA NA 0.00 0.00 0.00 NA NA NA 3.12 NA 1.75 0.00 NA 0.00 9.52 NA NA NA NA NA 2.38 K alternative_acceptor alpha-Man-I,I_chrX_10218352_10219759,I_chrX_10218390_10219759 chrX - chrX_10218352_10219846;chrX_10218575_10219846 chrX_10218390_10219846 chrX_10219847_10219859;chrX_10218290_10218351 42.86 NA NA NA NA NA NA 50.00 37.50 NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA K intron_retention Syb chr2R - chr2R_6138719_6139432 chr2R_6138718_6138719;chr2R_6139432_6139433 chr2R_6138659_6138718;chr2R_6139433_6139489 3.51 2.80 5.21 3.36 4.29 1.89 3.48 2.35 2.91 0.00 7.41 4.86 10.96 5.06 3.54 3.39 5.19 4.55 4.90 5.59 6.85 4.27 1.69 6.57 5.06 0.00 9.23 4.48 9.76 2.38 3.28 3.64 3.49 4.85 2.13 4.62 4.00 2.13 5.22 2.11 0.00 4.80 5.63 2.53 2.34 1.57 2.70 4.00 2.35 7.27 3.05 2.74 2.04 0.68 4.12 3.51 1.65 1.45 N jcn_only_AD CG10353,I_chrX_11775936_11778830,I_chrX_11778617_11778830,RI_chrX_11780885_11780988 chrX - chrX_11775936_11777234;chrX_11775936_11777220;chrX_11775936_11777133;chrX_11775936_11776142 chrX_11775936_11776058 chrX_11775836_11775935;chrX_11777235_11777654 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.43 0.00 0.00 0.00 0.00 0.00 11.54 0.00 0.00 11.57 0.00 0.00 0.00 16.42 0.00 0.00 0.00 7.05 0.00 0.00 8.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG31304 chr3R - chr3R_10926146_10926210 chr3R_10926149_10926210 chr3R_10926211_10926279;chr3R_10925968_10926145 26.09 11.76 30.77 NA NA NA 30.00 33.33 20.83 NA NA 25.00 NA NA 35.71 25.00 NA NA NA 31.25 36.36 36.36 26.47 25.93 14.29 NA 36.84 NA 33.33 20.00 NA NA 26.09 26.09 NA 24.00 26.47 20.00 26.92 26.92 NA 22.73 30.77 26.83 NA 21.43 NA NA 18.52 25.00 23.68 20.00 13.33 NA 42.86 25.00 26.67 NA K alternative_acceptor I_chrX_10148341_10149525,CG34319,noncoding_22888,I_chrX_10152994_10153223 chrX - chrX_10149620_10151700 chrX_10149624_10151700 chrX_10151701_10151766;chrX_10149593_10149619 100.00 NA NA NA NA NA 100.00 NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N jcn_only_AA Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629579_2629913;chr3L_2629613_2629913;chr3L_2629585_2629913;chr3L_2629684_2629913;chr3L_2629527_2629913 chr3L_2629597_2629913 chr3L_2629914_2629921;chr3L_2629427_2629526 6.81 7.33 11.92 9.57 6.31 8.20 13.57 7.17 9.77 9.52 29.29 9.51 13.94 9.55 5.74 9.97 4.87 5.37 8.02 6.62 20.33 5.56 5.78 4.13 7.14 7.67 4.08 9.43 6.80 4.51 7.82 8.05 5.32 10.51 7.35 5.66 2.53 2.70 2.88 5.95 10.04 7.12 8.73 5.66 5.15 5.88 5.11 7.54 6.89 5.88 6.81 5.62 1.83 6.62 8.31 6.16 2.96 3.77 K intron_retention CG17883,I_chr2R_560547_560618 chr2R + chr2R_559725_559782 chr2R_559724_559725;chr2R_559782_559783 chr2R_559407_559724;chr2R_559783_560146 0.00 0.00 0.00 15.38 0.00 0.00 0.00 1.67 5.33 NA NA 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 3.92 0.00 NA NA NA NA 0.00 NA NA NA NA 4.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 2.22 0.00 NA NA NA NA 0.00 NA 0.00 0.00 K intron_retention mew,I_chrX_13133259_13150649 chrX - chrX_13109896_13109951 chrX_13109895_13109896;chrX_13109951_13109952 chrX_13109110_13109895;chrX_13109952_13111019 0.00 0.00 1.47 0.00 0.00 0.00 0.00 1.01 1.23 0.00 1.52 0.45 0.00 0.00 1.39 0.00 0.74 0.00 0.00 0.43 1.54 0.00 0.89 0.00 0.00 0.00 3.38 4.55 0.00 0.00 1.55 0.00 0.00 1.01 1.04 1.94 1.38 0.00 0.00 1.67 2.25 1.69 0.00 0.00 0.00 0.00 0.00 0.00 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6543,I_chr2R_9741721_9741802 chr2R - chr2R_9740621_9740685 chr2R_9740620_9740621;chr2R_9740685_9740686 chr2R_9740452_9740620;chr2R_9740686_9741410 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Aut1,I_chr3L_18742839_18742896,RI_chr3L_18742839_18742911 chr3L + chr3L_18742839_18742896;chr3L_18742839_18742911 chr3L_18742839_18742892 chr3L_18742770_18742838;chr3L_18742912_18742977 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.81 100.00 98.75 100.00 100.00 100.00 98.88 98.02 98.72 100.00 100.00 98.63 93.10 98.26 97.10 98.68 100.00 100.00 100.00 100.00 100.00 98.43 100.00 98.18 99.35 100.00 99.21 100.00 100.00 99.21 100.00 99.07 100.00 100.00 98.39 100.00 100.00 99.15 98.85 100.00 98.68 98.64 98.69 K alternative_last_exon CG6151,noncoding_12788,I_chr3L_15803949_15804163,RI_chr3L_15803949_15805547,I_chr3L_15804255_15804319,I_chr3L_15806727_15808816 chr3L - chr3L_15804494_15806345;chr3L_15805342_15806345,chr3L_15805998_15806345 chr3L_15803949_15806345 chr3L_15804425_15804493;chr3L_15805029_15805341 chr3L_15803213_15803948 chr3L_15806346_15806453 95.88 95.88 95.83 96.93 98.53 96.34 97.76 97.22 95.26 95.65 82.14 98.21 97.73 96.59 96.74 89.68 95.71 95.12 97.14 95.31 86.30 90.36 93.75 96.36 95.65 98.77 93.10 86.67 93.51 94.74 97.32 96.30 91.58 96.13 95.12 81.33 96.08 95.70 95.73 95.30 97.14 96.79 97.30 96.51 95.92 97.12 95.10 94.85 95.88 96.04 96.55 96.67 91.67 95.45 97.48 95.19 96.58 95.86 K jcn_only_AA rl,I_chr2RHet_199154_207044,RI_chr2RHet_203476_203577,RI_chr2RHet_203592_207044,I_chr2RHet_232696_247338,RI_chr2RHet_240197_247338 chr2RHet + chr2RHet_203476_203577 chr2RHet_203476_203529 chr2RHet_203436_203475 91.30 NA NA NA NA NA NA NA NA NA NA NA 91.30 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25318474_25319163;chr3R_25318474_25319142;chr3R_25318474_25318925;chr3R_25318474_25319093;chr3R_25318474_25318971;chr3R_25318474_25319004;chr3R_25318474_25319167 chr3R_25318474_25319136 chr3R_25318374_25318473;chr3R_25319168_25319224 5.17 10.38 4.12 3.65 4.82 6.21 5.00 2.87 4.00 6.30 3.57 3.99 3.23 4.92 5.00 2.16 3.85 4.23 4.86 5.82 2.13 3.95 5.70 5.56 8.00 3.90 7.56 5.95 7.91 5.82 3.23 4.86 8.77 2.45 4.79 5.26 6.12 8.94 6.07 5.31 8.62 4.09 3.68 4.23 5.96 4.76 5.21 6.60 5.17 6.22 7.44 6.29 5.61 6.30 4.52 6.36 3.14 6.38 K jcn_only_AD Cg25C,I_chr2L_5029811_5029873 chr2L + chr2L_5029811_5030136;chr2L_5029747_5030136 chr2L_5029637_5030136 chr2L_5030137_5030237;chr2L_5029620_5029636 16.18 7.89 19.67 26.92 34.78 39.02 7.46 16.67 18.06 12.50 5.71 9.52 15.46 15.69 21.52 12.35 30.23 31.25 27.63 17.42 14.43 23.08 2.53 4.17 0.00 19.35 8.33 11.76 12.07 NA 46.15 39.39 18.18 28.93 13.16 6.12 2.86 2.17 4.17 23.53 14.89 41.57 18.87 17.95 33.33 16.88 9.52 28.36 31.07 5.26 1.45 0.00 43.37 0.00 39.60 5.13 0.00 29.06 K intron_retention bur,I_chr2L_21177679_21177901,I_chr2L_21177679_21178250,I_chr2L_21177960_21179329 chr2L - chr2L_21177679_21177901 chr2L_21177678_21177679;chr2L_21177901_21177902 chr2L_21177579_21177678;chr2L_21177902_21177959 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention gish,RI_chr3R_12118557_12122383 chr3R + chr3R_12119876_12122383 chr3R_12119875_12119876;chr3R_12122383_12122384 chr3R_12119830_12119875;chr3R_12122384_12122483 8.93 19.05 11.11 11.11 NA 7.69 11.32 15.56 20.29 NA NA 11.63 13.04 15.38 0.00 10.20 16.67 5.26 8.33 5.26 0.00 12.50 11.11 10.00 13.33 NA 0.00 12.50 0.00 5.88 13.64 NA 9.09 9.23 23.53 10.00 NA 14.29 NA 6.38 0.00 8.93 4.76 12.50 0.00 6.67 0.00 8.33 7.27 8.70 6.67 5.56 NA 0.00 0.00 10.00 8.33 8.33 K intron_retention gro chr3R + chr3R_21868657_21868716 chr3R_21868656_21868657;chr3R_21868716_21868717 chr3R_21868588_21868656;chr3R_21868717_21869101 91.67 NA NA 100.00 NA NA 76.92 92.86 85.00 NA NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA 100.00 100.00 NA NA NA NA NA NA 88.89 NA NA 92.31 88.89 100.00 87.50 88.89 NA 91.67 NA 91.67 NA 100.00 NA NA NA 90.91 90.00 NA 90.91 90.91 NA NA 90.00 88.89 NA NA K intron_retention didum,I_chr2R_3393005_3393348 chr2R + chr2R_3391268_3391333 chr2R_3391267_3391268;chr2R_3391333_3391334 chr2R_3391154_3391267;chr2R_3391334_3392220 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K jcn_only_AD Ark,I_chr2R_12909344_12909416,RI_chr2R_12912984_12913058 chr2R + chr2R_12909296_12909416 chr2R_12909344_12909416 chr2R_12909417_12909516;chr2R_12909244_12909295 3.85 3.85 5.00 6.52 5.41 7.14 3.70 10.87 13.10 NA 2.38 0.00 0.00 0.00 2.56 5.77 0.00 2.63 10.71 2.94 0.00 7.27 3.45 0.00 3.85 3.03 6.78 NA 0.00 2.22 14.71 NA 0.00 3.70 0.00 3.23 13.16 0.00 1.96 10.64 NA 8.33 3.70 10.53 NA 8.00 3.85 8.70 6.78 NA 3.23 6.25 NA NA 10.26 4.35 NA NA K alternative_acceptor CG6151,I_chr3L_15806727_15808816 chr3L - chr3L_15805342_15806345 chr3L_15805998_15806345 chr3L_15806346_15806453;chr3L_15805029_15805341 100.00 85.71 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 87.50 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 91.67 100.00 100.00 100.00 88.89 85.71 100.00 100.00 83.33 100.00 100.00 100.00 100.00 80.00 80.00 100.00 100.00 K multi_cassette lap,I_chr3R_3017854_3019314 chr3R + chr3R_3017854_3019314 chr3R_3017854_3018213;chr3R_3018377_3018442;chr3R_3018693_3019314 chr3R_3018214_3018376;chr3R_3018443_3018692 chr3R_3017754_3017853;chr3R_3019315_3019410 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748984_19750012;chr2R_19748984_19749783 chr2R_19748984_19749899 chr2R_19748884_19748983;chr2R_19750013_19750013 0.00 NA NA 0.00 NA 0.00 3.23 2.78 0.00 NA NA 3.03 NA NA NA 8.00 NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K alternative_donor CG15321,I_chrX_9578185_9579504,I_chrX_9578185_9579582,I_chrX_9578185_9580671,RI_chrX_9578185_9581011 chrX - chrX_9578185_9579582;chrX_9578185_9579535 chrX_9578185_9579504 chrX_9578085_9578184;chrX_9579583_9579597 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 10.00 0.00 0.00 NA NA 10.00 0.00 NA NA 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA 0.00 10.00 0.00 NA 0.00 NA 0.00 6.25 NA 0.00 NA NA NA 0.00 NA NA 0.00 K intron_retention Ddx1 chr3L + chr3L_22256705_22256757 chr3L_22256704_22256705;chr3L_22256757_22256758 chr3L_22256653_22256704;chr3L_22256758_22258427 0.00 NA 0.00 16.67 NA 0.00 0.00 16.00 0.00 NA NA 6.06 NA 0.00 NA 6.25 NA NA NA 2.78 NA 13.33 11.63 7.69 0.00 NA 12.50 14.29 NA 0.00 5.56 0.00 0.00 0.00 0.00 NA 0.00 10.00 5.41 11.11 NA 12.12 NA 0.00 0.00 0.00 4.76 0.00 0.00 7.14 0.00 0.00 NA NA 0.00 0.00 0.00 NA K intron_retention CG10171 chr3L - chr3L_13379639_13379700 chr3L_13379638_13379639;chr3L_13379700_13379701 chr3L_13379048_13379638;chr3L_13379701_13380698 60.00 36.36 46.15 90.91 NA 66.67 54.29 66.67 52.94 NA 36.36 55.56 50.00 71.43 66.67 75.00 69.23 50.00 68.18 60.00 35.71 25.00 93.33 NA NA 63.64 61.11 37.50 NA 50.00 61.54 66.67 NA 72.00 NA 66.67 NA 54.55 60.00 42.86 53.85 64.00 53.33 NA 66.67 68.75 45.45 62.50 62.96 47.37 55.00 62.50 NA NA 60.00 46.15 43.75 71.43 K jcn_only_AA Incenp,I_chr2R_3167836_3167975 chr2R + chr2R_3167832_3167978 chr2R_3167832_3167975 chr2R_3167736_3167831;chr2R_3167979_3168075 90.57 90.91 83.21 90.91 87.04 92.37 92.31 88.24 89.96 85.71 86.81 91.78 90.16 90.68 90.77 91.55 91.35 88.19 88.89 90.91 90.00 92.77 90.34 92.09 95.18 93.75 89.51 93.24 90.27 90.57 91.84 91.78 91.11 93.05 90.09 93.20 86.79 92.13 89.12 90.19 86.44 92.71 94.87 84.81 86.59 89.54 95.71 89.39 92.98 89.31 91.86 84.62 88.17 91.74 87.58 90.32 87.50 91.12 K jcn_only_AD Hairless chr3R + chr3R_16447945_16448305;chr3R_16447850_16448305 chr3R_16448221_16448305 chr3R_16448306_16449020;chr3R_16447843_16447849 84.21 78.26 80.95 88.68 NA NA 85.71 82.35 80.88 83.87 81.48 90.00 77.42 85.71 93.75 89.66 80.56 NA 94.12 86.27 76.92 86.54 70.59 80.00 90.00 72.73 86.96 78.57 90.00 91.67 NA NA 89.29 80.36 NA NA 84.21 NA 81.08 89.29 NA 83.64 NA 68.57 NA NA NA 92.31 95.35 NA 77.78 92.00 NA NA 74.07 NA NA 95.00 K intron_retention CG12375 chr2L - chr2L_8126699_8126756 chr2L_8126698_8126699;chr2L_8126756_8126757 chr2L_8125630_8126698;chr2L_8126757_8126897 16.67 NA NA 16.67 NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA 14.29 NA 0.00 NA NA NA NA 53.33 NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA K jcn_only_AD CG8709,I_chr2R_4027128_4027182,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030636,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4030580_4033259;chr2R_4030580_4030636 chr2R_4030580_4033256 chr2R_4030480_4030579;chr2R_4033260_4033265 2.63 6.67 1.82 1.79 2.78 1.75 3.54 1.98 2.17 12.50 2.27 0.84 0.00 2.08 4.44 1.32 3.45 0.00 4.55 4.81 4.88 1.96 8.08 3.75 0.00 1.61 6.10 2.78 6.12 5.17 0.00 3.45 6.12 1.96 4.55 3.85 3.12 2.63 1.54 4.62 3.45 2.44 3.77 3.23 8.00 0.00 0.00 4.44 0.00 2.56 2.17 0.00 2.63 11.54 5.63 2.50 0.00 2.00 K cassette CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789616_9789790 chr2L_9789616_9789674;chr2L_9789733_9789790 chr2L_9789675_9789732 chr2L_9789594_9789615;chr2L_9789791_9789832 31.03 29.27 33.20 49.89 31.46 28.33 28.39 35.45 30.25 37.01 25.64 27.12 40.28 34.88 30.77 24.77 35.03 32.67 35.71 27.14 24.32 42.29 13.20 37.98 34.50 16.45 36.69 34.97 18.32 23.29 33.33 26.88 29.15 30.80 27.84 9.92 34.90 32.32 36.55 32.87 25.48 28.60 35.56 32.84 24.86 28.93 35.48 27.82 26.03 35.16 35.29 37.25 21.32 32.12 33.57 31.03 29.46 23.95 K alternative_acceptor Pdp1,RI_chr3L_7809841_7810536,I_chr3L_7813130_7818683,I_chr3L_7831960_7846282 chr3L - chr3L_7809712_7810536;chr3L_7809826_7810536 chr3L_7809841_7810536 chr3L_7810537_7810636;chr3L_7809584_7809711 0.92 1.85 0.00 2.08 2.33 2.17 4.26 1.59 0.86 0.00 2.27 0.00 0.00 2.56 2.08 0.00 0.00 1.92 2.44 0.00 0.00 4.00 0.00 1.49 0.00 2.78 2.78 0.00 0.00 0.00 0.00 0.00 7.14 1.35 0.00 2.13 0.00 0.00 0.00 4.00 3.33 0.92 2.27 1.43 1.92 0.00 2.13 3.33 1.18 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 5.13 K alternative_acceptor Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5006178_5006243 chr2R_5006178_5006225 chr2R_5006021_5006177;chr2R_5006244_5006332 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6499021_6499184 chr2R_6499020_6499021;chr2R_6499184_6499185 chr2R_6498055_6499020;chr2R_6499185_6499248 2.00 0.00 4.44 5.00 0.00 0.00 3.57 5.41 6.93 0.00 0.00 4.50 11.36 7.55 1.72 0.00 6.98 0.00 3.85 3.31 5.00 0.00 2.53 3.95 1.75 0.00 2.78 0.00 0.00 0.00 8.00 0.00 2.76 6.49 2.00 0.00 2.44 0.00 1.03 5.30 2.33 4.40 0.00 1.67 0.00 0.00 5.71 2.55 2.47 0.00 4.76 8.57 3.33 0.00 1.96 0.00 0.00 1.94 K jcn_only_AA CG7656,I_chr3L_15580697_15581083 chr3L - chr3L_15579695_15580104 chr3L_15579701_15580104 chr3L_15580105_15580380;chr3L_15578904_15579694 28.43 23.97 19.48 31.82 30.51 33.93 37.93 29.47 27.32 23.08 18.52 30.68 28.30 22.73 40.85 32.35 16.95 19.05 22.22 27.86 21.57 30.77 28.26 29.17 30.39 25.00 34.88 27.40 33.72 23.94 23.08 30.99 28.43 22.58 32.26 29.59 33.53 32.31 29.44 32.73 40.48 29.07 23.91 26.32 25.40 32.59 31.76 34.52 23.53 26.42 16.53 24.64 22.90 23.53 26.56 31.79 35.48 31.82 K alternative_acceptor vig2 chr3R + chr3R_20949838_20950311 chr3R_20949838_20950293 chr3R_20949354_20949837;chr3R_20950312_20950498 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CEI_chrX_17177009_17196871,CG5445,I_chrX_17196752_17196871,RI_chrX_17196772_17196871,I_chrX_17196820_17196875,I_chrX_17198393_17198730 chrX + chrX_17196681_17196871;chrX_17196546_17196871;chrX_17196820_17196871;chrX_17196541_17196871 chrX_17196617_17196871 chrX_17196872_17196971;chrX_17196536_17196540 2.95 4.17 9.52 NA NA NA 0.00 6.06 1.89 NA NA 0.00 NA NA NA 3.85 NA 0.00 3.12 0.00 NA 0.00 16.67 10.71 NA 0.00 0.00 4.35 3.33 NA NA NA 0.00 8.70 NA NA 6.25 NA 0.00 2.44 0.00 3.45 0.00 7.14 NA 0.00 6.25 2.22 2.78 11.11 0.00 4.55 0.00 5.00 NA 9.09 9.09 2.22 K alternative_acceptor htt,I_chr3R_24527763_24528033,I_chr3R_24542203_24543363 chr3R + chr3R_24527763_24531256 chr3R_24527763_24528033 chr3R_24527663_24527762;chr3R_24531257_24531580 0.00 0.00 0.00 5.26 0.00 0.00 3.45 0.00 2.00 NA NA 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 2.38 3.12 0.00 4.76 0.00 3.85 0.00 0.00 6.25 3.23 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 2.50 0.00 2.27 0.00 0.00 NA NA 0.00 4.55 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA K intron_retention CG15365,I_chrX_8950375_8950458 chrX - chrX_8950375_8950479 chrX_8950374_8950375;chrX_8950479_8950480 chrX_8950275_8950374;chrX_8950480_8950558 17.14 NA NA NA NA NA NA NA 20.00 NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA K intron_retention tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563461_565232 chr3R_563460_563461;chr3R_565232_565233 chr3R_563195_563460;chr3R_565233_565290 96.15 95.45 95.24 100.00 82.61 90.91 83.78 94.29 93.75 100.00 78.26 96.15 95.45 95.65 91.30 95.35 95.24 95.45 90.91 93.10 100.00 95.24 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 94.29 NA 100.00 87.18 100.00 100.00 96.67 100.00 94.12 100.00 100.00 92.31 94.12 100.00 92.31 92.31 100.00 95.00 93.62 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 94.74 K intron_retention CG13551,I_chr2R_19265701_19270570 chr2R - chr2R_19270283_19270570 chr2R_19270282_19270283;chr2R_19270570_19270571 chr2R_19270138_19270282;chr2R_19270571_19270645 2.95 2.21 3.11 13.24 2.99 2.95 10.00 7.46 2.63 1.55 3.47 6.36 7.46 3.14 3.45 2.42 2.53 1.67 4.97 2.24 3.54 21.90 2.68 1.69 2.72 9.46 4.69 4.52 9.27 1.29 3.07 3.20 3.50 3.64 2.92 5.44 1.75 2.52 2.56 2.31 5.41 3.15 3.97 2.73 1.90 1.77 1.91 3.59 2.32 2.96 3.43 2.88 0.56 1.06 2.62 1.66 1.18 1.13 K intron_retention lolal,I_chr2R_14043671_14043736,I_chr2R_14043671_14043740,I_chr2R_14043671_14043901,RI_chr2R_14043671_14044082,I_chr2R_14043671_14044191,I_chr2R_14043671_14044461,I_chr2R_14043671_14045289,I_chr2R_14043671_14045344 chr2R - chr2R_14043671_14045477 chr2R_14043670_14043671;chr2R_14045477_14045478 chr2R_14043571_14043670;chr2R_14045478_14045549 12.90 28.57 6.45 10.81 30.77 10.53 0.00 13.51 12.90 NA 0.00 18.52 11.76 19.05 11.11 16.67 20.00 17.65 9.09 20.59 15.38 28.00 NA NA NA 10.00 NA NA 10.53 20.83 15.00 8.70 4.65 18.60 NA 30.77 NA NA NA 31.03 15.00 17.65 9.09 NA 5.26 8.33 NA 7.89 9.43 NA NA NA NA NA 7.69 NA 36.36 0.00 K alternative_donor CG9399,I_chr3R_5403032_5403329 chr3R - chr3R_5399255_5399863 chr3R_5399255_5399524 chr3R_5399076_5399254;chr3R_5399864_5399874 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA 100.00 NA K alternative_acceptor nimB1 chr2L + chr2L_13964739_13964796 chr2L_13964739_13964793 chr2L_13964670_13964738;chr2L_13964797_13964865 21.36 15.38 20.00 38.10 20.00 7.69 25.71 24.00 19.59 NA 24.14 26.23 26.67 24.14 17.95 32.26 25.71 20.93 16.67 21.80 22.22 NA 32.00 15.15 20.00 33.33 23.08 NA NA 23.53 21.30 20.00 25.00 28.85 15.38 33.33 23.53 21.74 12.73 17.95 24.32 21.36 24.32 16.00 12.50 20.00 20.59 24.14 23.19 15.00 17.78 23.81 18.75 28.00 19.05 13.95 18.28 12.50 N jcn_only_AA CG8080,I_chr2R_4979276_4979936,CG13741 chr2R - chr2R_4979276_4979936;chr2R_4979159_4979936 chr2R_4979377_4979936 chr2R_4979937_4980036;chr2R_4979059_4979158 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K intron_retention fs(1)h,I_chrX_7950171_7952371,I_chrX_7954192_7955240 chrX - chrX_7937767_7937939 chrX_7937766_7937767;chrX_7937939_7937940 chrX_7935384_7937766;chrX_7937940_7938063 0.00 0.00 2.33 2.50 0.00 1.92 0.00 1.59 1.85 1.96 0.00 0.00 0.00 2.22 2.00 0.00 0.00 0.00 2.27 0.00 0.00 1.14 0.00 0.00 0.00 0.00 1.85 7.14 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11539 chr3R - chr3R_27440907_27441093 chr3R_27440906_27440907;chr3R_27441093_27441094 chr3R_27440838_27440906;chr3R_27441094_27441478 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA NA 90.91 NA NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 K intron_retention RpL32,I_chr3R_25871509_25871807 chr3R - chr3R_25871509_25871855 chr3R_25871508_25871509;chr3R_25871855_25871856 chr3R_25871409_25871508;chr3R_25871856_25871862 0.26 0.29 0.14 0.09 0.14 0.00 0.26 0.15 0.06 0.69 0.10 0.11 0.19 0.23 0.12 0.17 0.16 0.07 0.13 0.09 0.19 1.02 1.58 0.33 0.45 0.14 1.72 1.92 1.07 0.63 0.14 0.46 0.51 0.12 0.76 0.40 0.45 0.36 0.59 0.44 0.89 0.11 0.22 0.42 0.21 0.47 0.24 0.50 0.28 0.26 1.65 0.00 0.26 0.35 0.16 0.16 0.23 0.48 K alternative_acceptor CG6509 chr2L - chr2L_11515671_11515725 chr2L_11515674_11515725 chr2L_11515726_11515817;chr2L_11511609_11515670 93.33 81.82 93.33 91.67 100.00 88.89 85.00 95.83 88.24 94.12 91.67 93.33 85.71 100.00 94.12 83.33 92.31 93.75 100.00 87.50 100.00 92.86 93.10 84.62 95.00 93.33 93.75 94.74 93.75 89.29 92.86 NA 91.30 96.15 92.86 91.67 94.44 93.75 90.91 96.67 90.00 96.55 100.00 95.45 90.00 NA 90.91 95.45 83.33 92.86 95.83 94.44 100.00 NA 84.21 100.00 NA 90.00 K alternative_donor stc chr2L + chr2L_15114214_15114311 chr2L_15114235_15114311 chr2L_15114312_15115753;chr2L_15114049_15114213 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 66.67 87.50 87.50 NA 90.91 75.00 86.36 70.00 NA NA 71.43 NA NA 88.89 90.00 NA 90.00 72.22 69.23 NA NA 70.00 NA 56.25 NA 68.00 NA NA 77.78 NA NA NA NA NA NA 63.16 K intron_retention CREF_chr3R_5589662_5589762,CG8481 chr3R + chr3R_5594297_5594466 chr3R_5594296_5594297;chr3R_5594466_5594467 chr3R_5594228_5594296;chr3R_5594467_5594493 30.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention mre11 chr2L + chr2L_11283534_11283592 chr2L_11283533_11283534;chr2L_11283592_11283593 chr2L_11282459_11283533;chr2L_11283593_11283753 0.00 0.00 1.96 7.27 0.00 0.00 0.00 3.85 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 3.77 0.00 6.67 0.00 0.00 1.82 0.00 0.00 1.89 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 1.52 0.00 1.96 0.00 0.00 2.00 0.00 0.92 0.00 K jcn_only_AA Cp110,I_chrX_21890195_21895316,I_chrX_21900456_21904601 chrX + chrX_21886363_21887237 chrX_21886363_21887072 chrX_21884923_21886362;chrX_21887238_21887471 20.00 NA 30.43 NA NA 9.52 NA NA 21.43 NA NA 13.64 NA NA NA 18.18 25.00 NA NA 11.54 NA NA NA 20.00 NA NA NA NA NA NA NA NA 34.88 NA NA NA NA NA NA 15.00 34.78 14.71 NA NA 28.00 25.93 NA 29.63 12.82 21.88 NA NA NA NA 15.00 20.00 NA 12.50 K jcn_only_AD rin,I_chr3R_9476825_9476895 chr3R + chr3R_9472992_9473104;chr3R_9473004_9473104 chr3R_9472923_9473104 chr3R_9473105_9473268;chr3R_9472709_9472922 100.00 97.83 100.00 99.14 100.00 100.00 99.12 100.00 99.73 100.00 100.00 100.00 100.00 100.00 100.00 99.19 99.33 100.00 99.45 100.00 100.00 98.46 100.00 100.00 100.00 100.00 96.43 97.37 NA 100.00 100.00 100.00 100.00 99.69 100.00 100.00 97.67 100.00 100.00 96.67 100.00 98.69 99.35 100.00 100.00 NA 100.00 100.00 98.86 100.00 100.00 100.00 100.00 NA 99.51 100.00 100.00 97.78 K intron_retention N chrX + chrX_3050223_3050292 chrX_3050222_3050223;chrX_3050292_3050293 chrX_3049960_3050222;chrX_3050293_3050497 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA cic chr3R + chr3R_16126135_16126356 chr3R_16126135_16126329 chr3R_16125939_16126134;chr3R_16126357_16126761 84.33 83.23 85.48 86.61 80.85 89.31 82.22 81.72 84.33 88.64 89.19 84.49 89.11 80.33 81.33 80.16 75.51 82.58 87.70 78.08 91.15 72.33 81.68 84.85 87.64 86.88 89.02 87.86 80.43 82.68 82.39 79.57 86.21 82.43 85.34 94.95 81.67 78.12 82.00 85.32 89.69 84.10 88.89 75.11 89.39 83.44 86.29 82.89 82.15 85.84 87.92 77.68 80.00 82.58 85.43 90.55 88.42 92.03 K intron_retention CG11727,CREI_chrX_11327451_11328532 chrX - chrX_11330826_11331055 chrX_11330825_11330826;chrX_11331055_11331056 chrX_11330808_11330825;chrX_11331056_11331170 25.00 NA NA NA NA NA NA NA 26.67 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA jim,I_chr3L_22791582_22791898 chr3L - chr3L_22792291_22792350 chr3L_22792303_22792350 chr3L_22792351_22792548;chr3L_22791902_22792290 4.73 4.55 11.36 9.46 8.11 9.38 4.35 9.09 4.76 2.13 NA 5.48 4.17 4.00 0.00 0.00 0.00 5.88 7.89 0.00 0.00 5.88 7.06 5.66 4.65 5.00 1.67 0.00 9.62 5.88 12.90 NA 13.16 10.34 4.17 2.33 4.13 3.28 3.95 4.71 NA 8.57 8.70 3.03 3.85 6.06 5.26 14.29 0.00 5.71 8.33 3.45 0.00 0.00 3.03 9.52 2.50 8.11 K intron_retention CG3523 chr2L + chr2L_3056925_3059604 chr2L_3056924_3056925;chr2L_3059604_3059605 chr2L_3056618_3056924;chr2L_3059605_3060142 0.29 0.42 0.00 0.82 0.00 0.00 0.35 0.29 0.56 0.43 0.62 0.25 0.00 0.00 0.00 0.36 0.24 0.00 0.41 0.62 0.00 0.81 0.42 0.36 0.30 0.25 0.29 1.33 1.47 0.42 0.36 0.00 0.52 0.39 0.30 0.00 0.00 0.00 0.00 0.29 0.00 0.58 0.52 0.19 0.00 0.00 0.00 0.38 0.59 1.06 0.31 0.00 0.00 0.00 0.79 0.00 0.00 0.00 N alternative_donor Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824086_11824186;chr2R_11824086_11824525 chr2R_11824086_11825790 chr2R_11823989_11824085 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31216 chr3R + chr3R_15513020_15513900 chr3R_15513019_15513020;chr3R_15513900_15513901 chr3R_15512852_15513019;chr3R_15513901_15514087 0.00 1.20 0.00 1.27 0.00 0.00 5.80 1.60 0.00 0.00 4.17 0.96 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 1.56 0.00 2.50 0.00 3.28 3.92 0.00 0.00 0.00 0.00 1.90 0.00 0.00 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.91 3.70 0.00 1.80 0.00 2.15 0.00 0.00 0.00 0.00 0.00 1.09 0.00 K alternative_donor Prp8,I_chr2R_8048572_8048683,psnoRNA:prp8-a,I_chr2R_8050245_8050389 chr2R - chr2R_8048572_8048851 chr2R_8048572_8048683 chr2R_8048472_8048571;chr2R_8048852_8048951 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.38 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 K alternative_donor Indy chr3L - chr3L_18825085_18833472 chr3L_18825085_18833375 chr3L_18825047_18825084;chr3L_18833473_18833593 19.72 15.00 13.95 13.56 10.00 19.44 30.77 24.29 15.48 NA 9.38 22.22 21.05 22.45 23.91 20.63 14.63 21.88 21.62 22.89 10.71 5.26 11.11 22.22 21.43 21.88 37.93 26.67 30.77 17.65 25.00 NA 22.22 25.00 31.25 36.84 0.00 NA 8.33 12.50 NA 16.44 15.79 10.53 0.00 9.52 0.00 30.00 22.73 8.33 22.58 23.08 5.88 NA 20.00 7.69 4.35 8.70 K jcn_only_AD CG3680,Pka-R1 chr3L + chr3L_20805565_20805623 chr3L_20805568_20805623 chr3L_20805624_20805770;chr3L_20805357_20805564 97.06 97.14 91.49 93.48 95.24 97.44 95.16 97.62 96.25 87.50 100.00 97.47 100.00 84.21 100.00 96.15 97.06 100.00 95.45 97.26 95.56 93.94 89.74 97.44 100.00 97.73 98.08 94.44 100.00 96.77 96.67 NA 100.00 97.06 96.30 100.00 96.67 97.14 98.15 98.44 NA 95.71 96.00 98.08 94.59 96.00 92.59 100.00 94.81 100.00 98.18 88.24 93.33 92.31 97.92 97.78 100.00 96.77 K intron_retention CG9947,eIF-2alpha chrX - chrX_16333548_16333629 chrX_16333547_16333548;chrX_16333629_16333630 chrX_16333481_16333547;chrX_16333630_16333795 30.77 NA 40.00 30.77 NA NA 33.33 29.17 34.62 NA NA 31.03 NA NA 50.00 37.50 NA NA 18.75 24.14 NA 18.75 41.67 23.81 NA NA 28.57 53.33 NA 19.05 NA 23.53 40.00 33.33 NA 13.33 25.00 42.86 35.00 32.00 25.00 34.78 NA 0.00 0.00 29.17 NA 20.83 39.13 18.75 35.00 NA NA 30.77 40.00 6.67 NA NA K alternative_last_exon CG7029,CG7023 chr3R + chr3R_18592449_18612727 chr3R_18592449_18600470 chr3R_18612728_18614239 chr3R_18600471_18602096 chr3R_18592333_18592448 20.29 20.29 20.00 10.59 20.49 21.55 9.36 16.75 15.82 10.10 28.95 19.12 47.83 20.95 23.88 23.90 17.65 13.79 20.63 18.12 26.21 14.18 19.34 21.76 13.18 14.02 15.66 23.16 23.50 14.65 20.77 31.25 14.78 18.23 24.32 7.04 15.33 18.24 19.66 19.16 23.08 19.32 21.51 17.53 22.22 28.79 31.78 13.70 17.36 33.94 20.95 21.82 22.95 43.66 19.59 35.29 32.76 23.30 K alternative_donor ND42,RI_chr3R_17861471_17861539 chr3R + chr3R_17854871_17854937 chr3R_17854875_17854937 chr3R_17854938_17855115;chr3R_17853742_17854870 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 1.17 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.42 0.32 0.21 K intron_retention RI_chrX_1796525_1796585,mip130,I_chrX_1820956_1821011,CG11596 chrX + chrX_1823418_1823486 chrX_1823417_1823418;chrX_1823486_1823487 chrX_1823277_1823417;chrX_1823487_1823744 10.77 6.90 10.53 14.81 4.44 11.76 12.70 5.00 10.19 11.76 17.14 13.04 11.43 4.00 10.00 3.09 7.32 9.68 7.84 13.33 15.38 11.48 14.77 10.77 17.50 16.67 9.86 2.33 17.78 12.28 18.95 12.31 12.90 7.89 9.62 12.68 13.24 10.64 16.22 8.06 8.96 6.86 2.38 9.52 10.94 6.35 17.31 9.40 10.75 16.67 17.39 11.63 3.03 10.96 5.63 8.33 12.90 5.19 K intron_retention Ddx1 chr3L + chr3L_22258428_22258499 chr3L_22258427_22258428;chr3L_22258499_22258500 chr3L_22256758_22258427;chr3L_22258500_22259747 0.00 0.00 0.00 5.88 0.00 5.26 NA 0.00 0.00 NA NA 3.12 NA NA 0.00 NA NA 0.00 0.00 0.00 NA 4.76 0.00 0.00 0.00 NA 19.05 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 2.13 0.00 6.45 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 4.76 0.00 0.00 K cassette c12_2 chrX + chrX_9213718_9214117 chrX_9213718_9213849;chrX_9213901_9214117 chrX_9213850_9213900 chrX_9213525_9213717;chrX_9214118_9214545 6.67 NA NA NA NA NA NA NA 5.00 NA NA 4.76 NA NA 7.14 NA NA NA NA 3.85 NA NA 3.45 10.00 6.67 NA 9.52 14.29 5.56 10.00 13.33 NA 10.00 13.33 NA 8.70 0.00 6.67 3.23 10.53 NA 0.00 NA 0.00 NA NA 6.67 6.67 0.00 NA 5.00 NA NA 6.67 NA 6.67 6.67 NA K intron_retention egg,Lcp9,I_chr2R_20674654_20674897 chr2R - chr2R_20663324_20663381 chr2R_20663323_20663324;chr2R_20663381_20663382 chr2R_20662986_20663323;chr2R_20663382_20664098 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD unc-104,I_chr2R_12643956_12644069,I_chr2R_12643956_12644305,RI_chr2R_12650846_12659758 chr2R - chr2R_12643956_12644069 chr2R_12643956_12644060 chr2R_12643856_12643955;chr2R_12644070_12644158 69.70 NA 72.41 65.85 NA 73.91 80.95 50.00 75.56 NA 59.09 73.68 NA 90.48 NA 70.83 NA 61.90 80.00 65.00 NA 60.00 63.89 61.54 63.64 70.83 88.00 NA NA NA 50.00 NA NA 56.52 72.41 60.87 87.50 NA 53.85 90.91 NA 82.61 NA NA NA NA 76.00 NA 68.42 65.00 82.05 NA NA NA 68.57 NA NA NA K intron_retention bdg,I_chr2R_11824086_11824186,CEI_chr2R_11826763_11827279 chr2R - chr2R_11812707_11812768 chr2R_11812706_11812707;chr2R_11812768_11812769 chr2R_11812427_11812706;chr2R_11812769_11812933 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG7580,I_chr3L_17468694_17468750,I_chr3L_17468699_17468750 chr3L + chr3L_17468695_17468750 chr3L_17468699_17468750 chr3L_17468751_17468850;chr3L_17468599_17468694 0.00 0.00 0.19 0.00 0.00 0.20 0.00 0.00 0.14 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.23 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.06 0.00 K intron_retention tay,I_chrX_15774035_15774320,I_chrX_15779977_15780538,RI_chrX_15780874_15781045,I_chrX_15783766_15785978 chrX - chrX_15774035_15774320 chrX_15774034_15774035;chrX_15774320_15774321 chrX_15773935_15774034;chrX_15774321_15774420 93.75 95.83 93.33 89.66 100.00 94.74 82.61 88.24 91.67 100.00 94.74 97.30 95.24 100.00 95.65 87.50 87.50 93.75 87.50 95.56 92.86 52.73 89.74 85.19 84.21 78.95 89.47 96.00 85.71 96.77 91.67 93.33 95.12 92.00 93.75 100.00 91.89 88.46 100.00 97.56 93.75 92.31 94.12 96.77 100.00 100.00 95.65 96.67 88.24 95.24 96.67 95.00 94.12 93.75 81.82 92.31 100.00 88.46 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2395659 chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2395660_2395759 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K alternative_acceptor NtR chr2R + chr2R_18016131_18016219 chr2R_18016131_18016198 chr2R_18015978_18016130;chr2R_18016220_18016386 100.00 100.00 100.00 98.00 96.77 96.97 96.67 98.55 97.06 95.00 100.00 93.33 100.00 100.00 97.62 100.00 96.55 100.00 96.88 100.00 96.15 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 93.33 96.43 100.00 97.73 98.08 100.00 100.00 100.00 100.00 100.00 96.67 96.15 98.53 100.00 100.00 100.00 96.77 100.00 100.00 98.53 100.00 100.00 91.67 96.97 100.00 97.06 95.00 95.65 98.28 K jcn_only_AD CG30372,RI_chr2R_4012976_4013037 chr2R - chr2R_4003221_4003636 chr2R_4003221_4003482 chr2R_4003174_4003220 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 1.96 0.00 0.00 1.56 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 3.03 0.00 0.00 0.00 1.82 1.52 2.86 0.00 2.70 0.00 2.94 0.00 0.00 K jcn_only_AA mRpS24 chr3R - chr3R_19989118_19989189 chr3R_19989130_19989189 chr3R_19989190_19989258;chr3R_19989052_19989117 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.85 100.00 100.00 100.00 100.00 96.43 100.00 97.67 100.00 97.30 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 NA NA NA NA 97.56 100.00 NA 100.00 NA NA 97.96 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 98.36 NA NA 100.00 100.00 NA 100.00 NA 100.00 97.37 K alternative_donor AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9003728_9004650 chrX_9003790_9004650 chrX_9004651_9005038;chrX_9003721_9003727 95.00 NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA 100.00 NA NA NA 90.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA 85.71 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K alternative_donor Eph,I_chr4_631523_634240,I_chr4_631555_631910,I_chr4_631643_631910,I_chr4_639690_640473,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_631555_631910;chr4_631523_631910 chr4_631643_631910 chr4_631911_632010;chr4_631455_631522 0.00 NA 0.00 11.76 NA 0.00 2.94 0.00 4.08 NA NA 2.44 4.35 0.00 0.00 1.67 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 5.26 NA NA NA 0.00 NA NA 2.33 0.00 NA NA NA NA 0.00 NA 0.00 0.00 6.25 NA NA NA 0.00 2.44 NA 0.00 NA NA NA 0.00 NA NA NA K intron_retention CG42270,I_chrX_17615384_17615455,I_chrX_17639729_17640603 chrX + chrX_17644882_17645041 chrX_17644881_17644882;chrX_17645041_17645042 chrX_17644587_17644881;chrX_17645042_17645053 0.00 0.00 NA 5.88 NA NA 30.77 NA 0.00 NA NA 4.76 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 4.00 0.00 NA 0.00 9.52 4.44 4.35 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 5.00 NA 0.00 0.00 2.50 0.00 0.00 10.53 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention Df31,RE_chr2L_21628206_21629662,I_chr2L_21628206_21629666,I_chr2L_21628210_21628515,I_chr2L_21628210_21628944,I_chr2L_21628210_21629216,EI_chr2L_21628210_21629715,REI_chr2L_21628210_21629884,I_chr2L_21628224_21629666,I_chr2L_21628734_21629666 chr2L - chr2L_21628210_21629666 chr2L_21628209_21628210;chr2L_21629666_21629667 chr2L_21628124_21628209;chr2L_21629667_21629762 0.44 0.19 0.28 0.38 0.34 0.36 0.47 0.62 0.21 0.23 0.00 0.53 0.54 0.60 0.44 0.53 0.20 0.55 0.26 0.23 0.22 1.31 0.63 0.44 0.63 0.22 1.82 0.86 0.82 0.55 0.31 0.22 0.37 0.29 0.75 0.52 0.72 0.60 0.61 0.56 0.33 0.22 0.68 0.39 0.21 0.33 0.52 0.25 0.42 0.57 0.61 0.51 0.36 0.46 0.09 0.48 0.34 0.24 K alternative_donor Vps35,I_chr2R_18073728_18074021,RI_chr2R_18074210_18074272 chr2R + chr2R_18074210_18074272 chr2R_18074212_18074272 chr2R_18074273_18074372;chr2R_18074110_18074209 100.00 100.00 100.00 98.44 100.00 100.00 100.00 100.00 98.73 100.00 100.00 98.46 100.00 100.00 100.00 97.50 100.00 96.55 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 98.04 100.00 100.00 100.00 96.77 97.50 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 97.87 96.30 98.11 100.00 95.45 100.00 100.00 100.00 100.00 100.00 K intron_retention vap,RI_chrX_15897976_15899352,I_chrX_15897976_15899654,I_chrX_15898011_15899654,I_chrX_15898427_15899017,RI_chrX_15898427_15899654,RI_chrX_15899237_15899352,I_chrX_15899237_15899654 chrX - chrX_15897976_15899352 chrX_15897975_15897976;chrX_15899352_15899353 chrX_15897911_15897975;chrX_15899353_15899365 96.67 96.67 100.00 100.00 100.00 100.00 97.96 98.41 98.75 100.00 96.55 100.00 96.43 97.06 93.33 96.49 96.88 95.65 97.56 98.25 96.43 97.44 96.88 100.00 92.86 91.43 100.00 93.75 95.65 95.45 89.19 90.00 86.21 98.33 93.33 100.00 100.00 94.74 100.00 100.00 83.33 97.01 96.77 96.43 90.00 95.00 92.31 95.00 98.67 100.00 100.00 100.00 92.86 90.91 95.00 94.44 95.00 94.74 K alternative_donor CG31140,F_chr3R_19799277_19802225 chr3R + chr3R_19803838_19804671 chr3R_19803934_19804671 chr3R_19804672_19804957;chr3R_19803658_19803837 5.88 NA NA NA NA NA NA NA 0.00 NA NA 5.00 NA NA NA NA NA NA NA NA NA 5.88 NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention MTA1-like,I_chr3R_1472938_1473838 chr3R - chr3R_1472938_1474218 chr3R_1472937_1472938;chr3R_1474218_1474219 chr3R_1472838_1472937;chr3R_1474219_1474591 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7741,I_chr2R_7192031_7192092 chr2R + chr2R_7192801_7192855 chr2R_7192800_7192801;chr2R_7192855_7192856 chr2R_7192643_7192800;chr2R_7192856_7193118 0.00 6.67 0.00 6.67 NA 0.00 2.38 0.00 0.00 NA 0.00 4.26 0.00 0.00 0.00 8.89 0.00 0.00 0.00 3.39 NA NA 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 11.76 0.00 NA 0.00 0.00 0.00 0.00 6.25 0.00 0.00 5.56 NA 0.00 3.23 0.00 0.00 0.00 K jcn_only_AD CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806425_22809684;chr3R_22806314_22809684 chr3R_22806824_22809684 chr3R_22809685_22809939;chr3R_22806256_22806313 47.05 NA NA 45.16 NA 38.10 40.00 49.02 64.29 NA NA 70.59 48.65 NA NA 57.89 NA 35.90 73.08 46.48 NA NA 40.91 NA NA NA NA NA NA 42.86 NA 44.00 31.58 60.00 NA NA NA NA NA NA NA 56.67 NA NA NA 47.62 NA 60.00 51.35 NA 28.57 NA NA NA NA NA 19.05 NA K intron_retention CG7414,I_chr3L_21819515_21819581 chr3L + chr3L_21819853_21820193 chr3L_21819852_21819853;chr3L_21820193_21820194 chr3L_21819575_21819852;chr3L_21820194_21820958 11.06 12.50 9.95 11.06 12.77 14.85 20.49 10.73 12.29 15.15 9.72 11.11 8.72 9.38 10.36 9.26 9.66 11.11 10.34 11.06 13.64 12.35 9.54 11.23 13.51 11.18 9.06 7.51 7.10 7.14 13.19 9.58 10.14 14.47 13.01 8.33 13.35 11.34 13.38 11.50 10.49 12.67 10.49 10.57 12.21 9.34 9.78 13.55 11.50 8.30 11.06 10.98 11.52 11.69 11.59 10.41 10.10 10.29 K intron_retention Ras85D,I_chr3R_5338175_5338299 chr3R - chr3R_5337719_5337874 chr3R_5337718_5337719;chr3R_5337874_5337875 chr3R_5337462_5337718;chr3R_5337875_5338174 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG42490,noncoding_3620,I_chr2L_18665287_18666474,RI_chr2L_18666413_18666474,CREI_chr2L_18666629_18666680 chr2L + chr2L_18665915_18666352 chr2L_18665914_18665915;chr2L_18666352_18666353 chr2L_18665676_18665914;chr2L_18666353_18666412 18.86 NA NA NA NA NA NA 30.77 21.05 NA NA 35.71 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA 14.29 NA NA 46.15 NA NA NA NA NA NA NA NA NA K alternative_acceptor svr,RI_chrX_421417_421591 chrX + chrX_390582_390645 chrX_390582_390633 chrX_390575_390581;chrX_390646_391422 100.00 NA 100.00 NA NA NA 100.00 100.00 94.44 NA NA 100.00 NA 100.00 87.50 100.00 100.00 100.00 100.00 100.00 87.50 NA NA NA NA 100.00 100.00 NA NA NA 86.67 NA NA 94.12 NA NA NA NA NA 92.31 NA 94.44 100.00 NA NA NA NA NA 94.44 NA 100.00 NA NA NA 88.89 NA NA NA K cassette I_chr2R_13334737_13336615,I_chr2R_13334737_13336769,mthl3 chr2R - chr2R_13336331_13336769 chr2R_13336331_13336615;chr2R_13336708_13336769 chr2R_13336616_13336707 chr2R_13336084_13336330;chr2R_13336770_13336869 6.13 3.23 9.68 13.64 4.00 9.52 8.77 2.80 5.06 NA 2.04 6.10 6.17 2.38 4.35 7.32 5.13 90.91 5.77 7.69 10.53 41.67 2.50 10.64 7.69 11.76 4.76 8.70 3.57 4.35 5.71 7.69 12.00 8.70 2.86 0.00 5.13 8.33 4.35 3.53 5.71 10.81 2.70 7.55 18.75 5.45 6.52 13.79 4.05 8.89 5.48 2.70 10.34 4.44 7.14 2.70 6.25 8.89 K alternative_acceptor CG31038,I_chr3R_25702915_25703648,I_chr3R_25705533_25722419,I_chr3R_25727788_25727905 chr3R + chr3R_25702901_25703648 chr3R_25702901_25703500 chr3R_25702865_25702900;chr3R_25703649_25703748 25.00 NA NA NA NA NA NA NA 25.00 NA NA 27.27 NA NA NA 20.00 NA NA NA NA NA 50.00 25.00 NA NA NA NA NA NA NA NA NA NA NA 18.18 NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG4829,I_chrX_16717240_16717547 chrX + chrX_16717240_16717619;chrX_16717240_16717547 chrX_16717240_16717889 chrX_16717140_16717239;chrX_16717890_16718151 1.76 2.24 2.07 0.12 29.01 33.63 3.65 1.02 1.71 7.92 1.13 3.77 2.05 1.76 3.44 0.58 1.27 2.69 1.92 1.97 2.69 0.00 2.08 2.83 2.78 0.48 4.32 8.59 0.71 0.44 2.10 0.25 0.80 0.81 2.22 0.00 1.52 1.80 1.33 3.40 2.22 0.83 1.50 1.09 0.88 2.82 1.83 1.43 2.02 3.25 3.08 1.36 0.78 1.23 1.05 1.75 0.84 0.85 K alternative_donor Df31,RE_chr2L_21628206_21629662,I_chr2L_21628206_21629666,I_chr2L_21628210_21628515,I_chr2L_21628210_21628944,I_chr2L_21628210_21629216,EI_chr2L_21628210_21629715,REI_chr2L_21628210_21629884,I_chr2L_21628224_21629666,I_chr2L_21628734_21629666 chr2L - chr2L_21628210_21629216;chr2L_21628210_21629666;chr2L_21628210_21628515;chr2L_21628210_21628944;chr2L_21628210_21629884 chr2L_21628210_21629715 chr2L_21628124_21628209;chr2L_21629885_21629918 0.00 0.00 0.00 0.17 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.33 0.31 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor BM-40-SPARC,I_chr3R_22696095_22696231,I_chr3R_22696095_22696291,I_chr3R_22696095_22697413 chr3R - chr3R_22696095_22697647;chr3R_22696095_22696291;chr3R_22696095_22697413 chr3R_22696095_22696231 chr3R_22695995_22696094;chr3R_22697648_22697767 0.16 0.09 0.25 0.16 0.13 0.15 0.25 0.16 0.06 0.16 0.11 0.14 0.16 0.19 0.16 0.15 0.17 0.15 0.07 0.19 0.16 0.04 0.20 0.10 0.25 0.16 0.12 0.12 0.17 0.23 0.28 0.07 0.12 0.20 0.24 0.47 0.10 0.18 0.06 0.55 0.41 0.06 0.13 0.12 0.16 0.20 0.14 0.59 0.12 0.09 0.32 0.13 0.09 0.22 0.29 0.06 0.05 0.08 K alternative_donor pAbp,I_chr2R_14027838_14028996 chr2R + chr2R_14028464_14028996;chr2R_14028460_14028996 chr2R_14028922_14028996 chr2R_14028997_14029096;chr2R_14028264_14028459 22.22 14.29 NA 20.00 20.00 28.57 33.33 16.67 33.33 NA NA 22.22 33.33 16.67 NA 23.08 14.29 50.00 28.57 15.38 NA 27.27 12.50 33.33 NA 20.00 15.38 27.27 22.22 NA 20.00 NA 0.00 30.00 NA NA 44.44 NA 14.29 13.33 NA 30.00 NA 7.14 NA NA NA 12.50 30.00 NA NA NA NA NA 25.00 NA 40.00 28.57 K alternative_donor CG16940,I_chr3L_212740_212843,I_chr3L_212783_212843,noncoding_9585,Kaz1-ORFA_Kaz1-ORFB chr3L + chr3L_212785_212843;chr3L_212788_212843 chr3L_212308_212843 chr3L_212844_212943;chr3L_212275_212307 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 N alternative_donor boi,I_chrX_2363445_2363896 chrX - chrX_2346181_2350623 chrX_2346181_2346377 chrX_2344936_2346180;chrX_2350624_2350719 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.41 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K alternative_donor CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3081761_3083732 chr3L_3082228_3083732 chr3L_3083733_3083809;chr3L_3081699_3081760 83.33 80.95 83.33 89.80 94.74 88.24 95.45 73.91 91.18 80.00 88.89 86.67 62.50 84.62 78.26 93.75 95.83 95.24 85.19 80.00 88.24 77.78 65.52 73.33 90.91 96.00 81.82 66.67 83.33 68.75 95.83 75.00 63.64 81.63 83.33 87.50 80.00 90.00 68.42 78.57 83.33 87.23 85.71 72.73 83.33 46.15 61.54 56.25 89.80 62.50 75.86 90.91 83.33 85.71 82.86 63.64 90.91 54.55 K intron_retention AT25722,CG3356 chr2R + chr2R_20085960_20086018 chr2R_20085959_20085960;chr2R_20086018_20086019 chr2R_20085169_20085959;chr2R_20086019_20086739 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.69 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 K intron_retention CG3226 chrX - chrX_6548114_6548178 chrX_6548113_6548114;chrX_6548178_6548179 chrX_6547941_6548113;chrX_6548179_6548278 0.00 0.00 1.43 1.29 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.26 0.00 K cassette Nup153,I_chrX_16495232_16495296 chrX + chrX_16500042_16501965 chrX_16500042_16500894;chrX_16501033_16501965 chrX_16500895_16501032 chrX_16499883_16500041;chrX_16501966_16502033 96.77 98.31 92.86 97.62 97.22 97.44 91.67 94.12 95.60 97.87 89.47 92.13 100.00 96.55 100.00 96.77 100.00 100.00 100.00 95.96 96.67 90.36 96.00 96.67 95.08 90.62 94.20 98.33 87.84 98.78 96.77 98.53 95.70 87.93 98.25 98.65 98.04 96.67 95.10 97.16 98.57 94.95 100.00 98.73 95.93 97.30 94.94 97.30 94.59 85.15 100.00 100.00 94.12 97.53 97.50 98.70 93.42 88.79 K alternative_donor CG16940,I_chr3L_212740_212843,I_chr3L_212783_212843,noncoding_9585,Kaz1-ORFA_Kaz1-ORFB chr3L + chr3L_212308_212843;chr3L_212788_212843 chr3L_212785_212843 chr3L_212844_212943;chr3L_212275_212307 84.00 88.24 78.95 84.00 80.00 80.95 89.29 85.71 84.09 88.89 88.89 85.71 92.86 81.25 86.36 76.92 76.92 80.95 83.33 87.23 90.48 78.26 80.77 77.78 84.62 80.00 78.26 84.21 68.42 90.00 77.78 66.67 88.89 80.77 87.50 65.00 84.62 87.50 78.26 83.33 77.78 85.71 87.50 86.67 86.36 86.21 87.50 88.00 84.85 80.77 75.00 83.33 83.33 82.35 77.27 78.26 88.46 91.18 K jcn_only_AA CG8116,I_chr3R_4542126_4542214,RI_chr3R_4542291_4542625,RI_chr3R_4542291_4542652,I_chr3R_4542561_4542617,I_chr3R_4545118_4545525 chr3R + chr3R_4542291_4542617;chr3R_4542291_4542625 chr3R_4542291_4542622 chr3R_4542215_4542290;chr3R_4542626_4542717 16.28 NA 10.00 17.65 28.57 NA 7.14 18.18 20.37 12.12 23.81 8.57 10.00 NA 3.85 8.33 22.73 16.67 8.33 21.31 25.00 15.58 15.62 17.24 NA NA 23.81 14.29 15.00 12.20 9.52 13.73 12.70 22.58 30.00 12.00 16.22 NA 19.23 20.88 21.21 15.56 NA 16.28 20.51 16.92 NA 17.78 20.59 20.00 9.09 NA 16.00 NA 28.00 NA NA 10.45 K alternative_acceptor polo,I_chr3L_20303509_20305486,I_chr3L_20306985_20307177 chr3L + chr3L_20305712_20305791 chr3L_20305712_20305778 chr3L_20305283_20305711;chr3L_20305792_20306566 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.53 100.00 100.00 100.00 100.00 100.00 98.68 100.00 97.06 97.56 100.00 100.00 100.00 98.15 100.00 100.00 100.00 100.00 98.53 100.00 100.00 100.00 100.00 100.00 100.00 98.65 100.00 100.00 100.00 99.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA lds,I_chr3R_3748184_3748242 chr3R + chr3R_3748184_3748268 chr3R_3748184_3748242 chr3R_3748084_3748183;chr3R_3748269_3748342 0.00 0.00 1.49 0.00 0.00 1.72 0.00 0.00 0.00 0.00 2.27 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 1.89 0.00 0.00 0.00 0.00 1.85 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 1.47 3.39 0.84 0.00 0.00 0.00 1.12 2.08 0.00 0.00 2.44 0.00 0.00 0.00 2.00 0.00 0.00 0.00 2.88 K alternative_donor CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4840394;chr3R_4839215_4840589 chr3R_4839215_4840474 chr3R_4839038_4839214;chr3R_4840590_4840610 83.97 90.00 54.55 66.67 71.43 88.89 91.67 71.43 70.00 83.33 69.23 66.67 54.55 61.54 66.67 88.24 63.64 72.73 90.91 73.08 72.73 87.50 90.91 80.00 NA 64.29 91.67 72.73 91.67 90.91 85.71 77.78 88.24 58.82 87.50 90.00 92.31 83.33 NA 85.19 84.62 56.25 61.54 93.75 56.25 100.00 100.00 91.67 62.96 90.00 81.82 90.00 88.89 NA 80.00 90.00 88.89 100.00 K intron_retention CG8777,RI_chr2R_4989921_4989993,Vang chr2R + chr2R_4989921_4989980 chr2R_4989920_4989921;chr2R_4989980_4989981 chr2R_4989821_4989920;chr2R_4989981_4990155 0.00 0.00 0.00 22.22 NA 0.00 3.33 0.00 4.88 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 7.14 NA NA 0.00 0.00 NA NA 2.70 NA 7.14 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention lola,I_chr2R_6419625_6419686,I_chr2R_6421474_6421644,RI_chr2R_6421474_6421652,I_chr2R_6421474_6422304,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354,psnoRNA:lola-a,psnoRNA:lola-b,psnoRNA:lola-c,psnoRNA:lola-d chr2R - chr2R_6421474_6430409 chr2R_6421473_6421474;chr2R_6430409_6430410 chr2R_6421381_6421473;chr2R_6430410_6430760 0.00 0.00 0.00 2.94 0.00 NA 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 6.12 3.85 0.00 0.00 0.00 0.00 4.00 0.00 4.17 4.35 0.00 NA 0.00 0.00 0.00 5.56 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 K alternative_acceptor E_chr2RHet_2881760_2912543,eIF-4B,I_chr2RHet_2903246_2912532,I_chr2RHet_2912605_2917250 chr2RHet + chr2RHet_2901839_2902098 chr2RHet_2901839_2902093 chr2RHet_2901816_2901838;chr2RHet_2902099_2902500 100.00 100.00 100.00 100.00 96.88 100.00 100.00 98.81 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 98.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention stai,I_chr2L_6110225_6121773 chr2L + chr2L_6122854_6122977 chr2L_6122853_6122854;chr2L_6122977_6122978 chr2L_6122698_6122853;chr2L_6122978_6123837 0.00 0.00 0.00 1.44 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 1.32 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 4.35 0.00 0.00 0.00 2.04 1.37 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.78 2.02 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG12582 chr3R + chr3R_25016_27564 chr3R_25015_25016;chr3R_27564_27565 chr3R_24727_25015;chr3R_27565_28044 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.47 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 1.82 1.31 0.00 0.00 1.30 0.00 0.00 0.00 0.00 1.06 1.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 1.97 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 1.11 K intron_retention Rtnl1,I_chr2L_4994995_5006383,RE_chr2L_4994997_5008180,I_chr2L_4999386_5000201,I_chr2L_5004757_5006383,I_chr2L_5004775_5006231,I_chr2L_5004775_5006381,I_chr2L_5004775_5006392,I_chr2L_5027222_5028118 chr2L - chr2L_5004208_5004613 chr2L_5004207_5004208;chr2L_5004613_5004614 chr2L_5004180_5004207;chr2L_5004614_5004774 42.11 NA NA NA NA NA NA 40.00 43.75 NA NA 54.55 NA NA NA NA NA NA NA 42.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 27.27 NA NA NA NA NA NA NA NA NA K alternative_donor lolal,I_chr2R_14043671_14043736,I_chr2R_14043671_14043740,I_chr2R_14043671_14043901,RI_chr2R_14043671_14044082,I_chr2R_14043671_14044191,I_chr2R_14043671_14044461,I_chr2R_14043671_14045289,I_chr2R_14043671_14045344 chr2R - chr2R_14043671_14045477 chr2R_14043671_14045446 chr2R_14043571_14043670;chr2R_14045478_14045549 15.62 NA 17.14 13.16 NA 10.53 11.76 20.00 15.62 NA 12.50 21.43 25.00 15.00 11.11 21.88 9.09 22.22 16.67 27.03 15.38 14.29 NA NA NA 18.18 NA NA 22.73 9.52 19.05 12.50 14.58 14.63 NA NA NA NA NA 28.57 22.73 14.29 9.09 NA 25.00 18.52 NA 20.45 12.73 NA NA NA NA NA 5.26 NA NA 21.62 K intron_retention CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_155591_155927,I_chr4_157794_157864 chr4 + chr4_154551_155497 chr4_154550_154551;chr4_155497_155498 chr4_154513_154550;chr4_155498_155561 96.97 100.00 96.00 88.57 92.31 95.24 96.49 90.32 98.61 100.00 100.00 94.29 100.00 96.97 95.83 96.49 100.00 94.74 100.00 97.30 93.33 NA 100.00 100.00 NA 100.00 100.00 NA 90.91 100.00 95.83 NA 100.00 98.04 91.67 91.67 90.00 NA 88.89 95.83 87.50 97.44 100.00 95.24 NA 100.00 100.00 100.00 98.18 NA 93.33 100.00 88.89 90.00 100.00 100.00 NA 91.67 K intron_retention I_chr3R_6694098_6694160,Fdh chr3R - chr3R_6697748_6697817 chr3R_6697747_6697748;chr3R_6697817_6697818 chr3R_6696625_6697747;chr3R_6697818_6697907 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG5794,I_chr3R_20475643_20475715 chr3R - chr3R_20462920_20463019 chr3R_20462947_20463019 chr3R_20463020_20463357;chr3R_20462180_20462919 26.09 20.00 17.65 19.05 33.33 22.22 28.00 24.24 29.63 25.00 31.25 24.24 15.00 15.00 46.67 27.27 35.00 35.00 35.29 23.40 20.00 36.00 26.92 35.71 28.57 14.81 20.00 NA 15.00 38.46 20.83 NA 23.08 31.25 NA 31.25 26.32 NA 27.27 26.09 33.33 22.45 35.29 17.65 20.00 26.09 25.00 25.00 28.26 22.22 23.08 36.36 18.75 14.29 21.74 26.67 37.50 27.27 N jcn_only_AD noncoding_4622,CE_chr2R_2237053_2237111 chr2R - chr2R_2237036_2237090;chr2R_2237036_2237086 chr2R_2237036_2237093 chr2R_2236997_2237035;chr2R_2237094_2237159 24.87 0.00 31.51 NA 33.33 0.00 21.94 23.75 26.01 30.56 0.00 31.73 26.47 36.59 0.00 0.00 26.00 35.56 20.00 30.23 29.31 29.20 0.00 21.74 NA 0.00 NA 21.43 23.64 16.35 29.31 23.81 23.87 24.44 33.96 27.84 28.89 37.84 38.10 16.92 28.26 25.74 26.15 36.11 39.39 34.00 0.00 25.29 16.67 0.00 22.22 0.00 17.39 0.00 21.67 0.00 26.42 31.37 K intron_retention CG15072,I_chr2R_14589693_14590032 chr2R + chr2R_14588117_14588174 chr2R_14588116_14588117;chr2R_14588174_14588175 chr2R_14587524_14588116;chr2R_14588175_14588457 0.00 0.00 0.00 0.00 0.00 0.00 6.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.63 0.00 0.00 3.45 K intron_retention nimB5,Cyp28a5 chr2L + chr2L_13971682_13971740 chr2L_13971681_13971682;chr2L_13971740_13971741 chr2L_13971613_13971681;chr2L_13971741_13971809 1.55 2.99 1.48 2.56 0.71 0.57 1.48 0.73 1.87 5.26 2.30 1.38 2.38 1.24 0.96 1.98 0.72 1.77 0.61 1.64 2.11 1.52 2.01 0.00 0.00 9.77 3.11 0.00 8.62 0.00 0.93 1.12 1.46 2.68 0.00 0.00 1.56 0.00 1.78 0.90 4.00 1.91 0.70 4.40 3.33 1.70 0.00 1.55 1.80 1.94 0.80 3.31 1.82 2.16 2.00 0.94 0.98 1.05 K intron_retention Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19547223_19547916 chr2R_19547222_19547223;chr2R_19547916_19547917 chr2R_19547179_19547222;chr2R_19547917_19547942 92.31 88.89 93.75 91.84 92.86 100.00 100.00 92.31 91.11 100.00 94.12 93.55 77.78 89.47 95.83 95.45 94.44 87.50 89.47 96.55 93.33 97.73 80.00 95.00 94.12 85.71 100.00 90.91 100.00 96.77 86.36 90.00 85.19 85.19 93.75 92.31 89.29 91.67 77.78 96.88 100.00 91.30 100.00 88.89 81.82 85.71 92.31 95.65 96.30 66.67 91.30 92.86 80.00 100.00 95.65 NA 66.67 91.67 K jcn_only_AD CG7632 chr3L + chr3L_21298066_21298178 chr3L_21298120_21298178 chr3L_21298179_21299298;chr3L_21297817_21298065 93.33 100.00 96.15 94.44 96.43 80.65 96.36 93.62 86.15 93.10 100.00 97.14 92.59 NA 93.55 92.11 90.32 86.96 100.00 93.33 NA 100.00 85.29 100.00 NA 100.00 93.33 90.48 72.00 NA 92.11 NA NA 94.64 100.00 92.31 100.00 96.55 NA 96.67 NA 94.20 95.24 NA NA 90.62 95.83 NA 91.49 88.89 93.33 86.21 NA NA 93.10 87.88 81.48 NA K intron_retention Tab2 chr2R + chr2R_15188305_15190179 chr2R_15188304_15188305;chr2R_15190179_15190180 chr2R_15186700_15188304;chr2R_15190180_15190383 1.82 1.27 0.00 3.28 0.00 4.44 0.00 4.40 1.64 0.00 7.55 3.23 3.23 2.38 4.48 0.00 4.08 7.27 4.44 1.10 3.28 0.00 2.47 0.00 1.82 2.63 5.66 0.00 3.57 2.13 0.00 4.35 3.12 0.00 0.00 2.27 1.05 0.00 0.95 1.37 0.00 1.80 0.00 1.89 3.28 0.00 0.00 0.00 3.03 3.45 0.00 3.45 0.00 0.00 3.85 3.51 1.72 7.14 K jcn_only_AA Exp6,I_chrX_369347_369797 chrX - chrX_368234_368342 chrX_368252_368342 chrX_368343_368539;chrX_367797_368233 9.09 7.14 6.25 9.80 NA NA 3.03 5.71 10.42 NA NA 10.00 8.00 0.00 NA 20.00 NA 14.29 NA 15.38 16.67 9.38 6.38 9.09 NA NA 14.71 NA 9.38 11.54 8.00 NA 6.52 8.89 3.70 12.20 5.71 8.00 5.56 13.33 11.76 2.27 NA 4.76 4.55 7.69 13.64 12.90 17.07 4.55 10.00 NA NA NA 10.34 0.00 NA 16.00 K intron_retention dor,hfw chrX + chrX_1560166_1560219 chrX_1560165_1560166;chrX_1560219_1560220 chrX_1559507_1560165;chrX_1560220_1561645 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 2.38 0.00 0.00 0.00 4.65 1.92 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor musashi,C_chr3R_21387506_21389801 chr3R + chr3R_21344160_21344982 chr3R_21344195_21344982 chr3R_21344983_21345451;chr3R_21344092_21344159 66.67 NA NA NA NA NA 85.71 NA 66.67 NA NA NA NA NA NA 88.89 NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 63.64 NA NA NA K intron_retention RpS11,I_chr2R_8087545_8087625,I_chr2R_8087545_8087698,I_chr2R_8087747_8088193 chr2R - chr2R_8087545_8087698 chr2R_8087544_8087545;chr2R_8087698_8087699 chr2R_8087476_8087544;chr2R_8087699_8087725 99.97 99.97 99.96 99.98 100.00 99.95 99.97 99.95 99.98 99.94 99.96 100.00 100.00 100.00 99.97 100.00 100.00 100.00 99.96 99.96 100.00 100.00 99.97 100.00 100.00 100.00 99.91 99.84 99.95 99.95 100.00 99.87 99.89 99.97 99.84 99.83 99.98 99.97 99.97 99.96 100.00 99.98 99.95 100.00 99.96 99.96 100.00 100.00 100.00 99.97 100.00 100.00 100.00 100.00 99.96 99.97 99.98 99.95 K cassette CG9008 chr2L - chr2L_13776157_13777770 chr2L_13776157_13776416;chr2L_13776636_13777770 chr2L_13776417_13776635 chr2L_13776098_13776156;chr2L_13777771_13777822 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 4.76 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention Mkrn1 chr3L - chr3L_21524674_21524857 chr3L_21524673_21524674;chr3L_21524857_21524858 chr3L_21523692_21524673;chr3L_21524858_21525131 0.00 0.00 0.00 20.00 NA 4.00 2.94 2.22 2.13 0.00 NA 5.00 8.33 10.53 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 6.67 NA 0.00 0.00 0.00 NA 0.00 4.44 0.00 0.00 0.00 0.00 NA 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 5.56 8.89 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.00 K intron_retention Nmda1,R_chr2R_8766216_8766562,I_chr2R_8766652_8766956,I_chr2R_8766728_8766791,I_chr2R_8766728_8767623 chr2R - chr2R_8766216_8766701 chr2R_8766215_8766216;chr2R_8766701_8766702 chr2R_8766116_8766215;chr2R_8766702_8766712 13.89 11.76 47.06 5.94 NA NA 10.81 12.82 18.57 NA NA 16.67 60.00 28.57 69.23 21.28 NA 38.46 53.33 5.26 NA 30.00 10.84 7.79 5.26 15.38 17.07 9.80 33.33 NA 27.27 21.43 14.81 13.89 6.12 23.53 11.11 20.00 5.31 18.92 15.38 13.79 NA 8.89 8.16 3.12 5.56 13.04 17.19 21.88 7.46 17.86 2.78 3.85 42.11 5.00 12.00 8.33 K intron_retention Mob2,RI_chr3L_11520443_11527440,CE_chr3L_11520917_11527526,RE_chr3L_11520925_11527489,RI_chr3L_11535932_11545929 chr3L - chr3L_11520917_11527440 chr3L_11520916_11520917;chr3L_11527440_11527441 chr3L_11520825_11520916;chr3L_11527441_11527462 71.88 63.64 75.00 72.41 NA 90.91 68.89 71.88 69.05 NA 76.47 65.52 70.00 60.87 80.00 71.88 75.00 71.43 78.26 76.92 75.00 62.50 68.42 77.78 54.55 81.25 93.33 78.57 86.67 77.78 83.33 70.00 57.14 62.22 60.87 73.91 58.33 NA NA 56.25 44.44 67.74 73.68 72.22 71.43 45.45 72.73 70.59 70.27 76.92 73.33 87.50 NA 64.29 73.33 75.00 69.23 66.67 K intron_retention Rox8,I_chr3R_19872211_19872659,I_chr3R_19876189_19876240 chr3R - chr3R_19870013_19870079 chr3R_19870012_19870013;chr3R_19870079_19870080 chr3R_19869919_19870012;chr3R_19870080_19870988 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.83 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention AP-50,CG7054 chr3R + chr3R_18288253_18288312 chr3R_18288252_18288253;chr3R_18288312_18288313 chr3R_18288233_18288252;chr3R_18288313_18288501 87.50 93.02 73.33 93.10 83.87 68.75 87.50 88.89 88.79 85.71 100.00 85.71 81.08 82.05 83.72 83.33 85.71 73.08 82.14 83.87 87.50 88.00 93.65 91.84 97.30 85.19 94.23 88.57 96.67 87.50 82.35 95.65 78.12 74.58 88.24 92.00 91.36 91.30 91.67 80.00 80.00 74.65 83.87 90.48 84.62 82.93 83.33 90.48 80.28 93.02 96.00 94.44 88.89 96.97 81.08 92.68 92.16 89.74 K alternative_acceptor CG42258,I_chrX_12359522_12362282 chrX + chrX_12370302_12370369 chrX_12370302_12370351 chrX_12370186_12370301;chrX_12370370_12370989 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 2.94 0.00 2.27 0.00 NA 4.76 0.00 0.00 0.00 4.00 1.37 0.00 0.00 2.13 0.00 0.00 7.14 3.23 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 1.92 2.56 0.00 0.00 2.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 K intron_retention CG1621,CG1620 chr2R - chr2R_3382303_3382370 chr2R_3382302_3382303;chr2R_3382370_3382371 chr2R_3381469_3382302;chr2R_3382371_3382966 10.81 5.71 14.29 32.65 21.43 12.50 33.33 9.80 10.00 10.81 12.00 22.41 16.67 10.71 10.34 3.77 9.68 8.57 15.79 12.68 16.67 13.21 23.53 11.54 20.69 11.11 8.82 30.30 18.75 3.51 10.26 7.14 5.48 14.00 10.53 30.00 10.94 7.89 10.94 10.39 12.24 10.67 14.29 3.33 3.28 7.32 12.50 1.30 8.89 10.53 8.96 6.25 7.69 11.63 2.27 23.26 11.32 0.91 N multi_cassette 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5993331_5994971 chr2R_5993331_5993445;chr2R_5993610_5993828;chr2R_5994303_5994971 chr2R_5993446_5993609;chr2R_5993829_5994302 chr2R_5993231_5993330;chr2R_5994972_5995071 93.33 88.89 93.33 86.02 95.00 95.65 98.67 98.86 94.39 89.47 92.50 94.32 98.15 97.87 98.33 96.39 100.00 95.74 96.61 96.91 97.78 38.46 92.75 96.67 89.74 93.33 94.03 90.24 67.50 96.67 93.22 80.00 72.22 95.40 94.74 82.50 90.38 95.56 93.85 84.27 84.62 96.08 97.83 87.72 82.93 92.31 92.59 79.31 96.04 90.20 91.67 88.57 90.24 95.24 96.92 92.59 97.06 90.91 K intron_retention CG1516,cbx,I_chr2R_5752557_5752628,RI_chr2R_5752988_5757801 chr2R - chr2R_5752575_5752628 chr2R_5752574_5752575;chr2R_5752628_5752629 chr2R_5752013_5752574;chr2R_5752629_5752728 0.00 NA NA 3.12 NA 0.00 0.00 11.11 0.00 NA NA 0.00 14.29 NA 0.00 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 10.53 K intron_retention CG1553 chr2R - chr2R_3692444_3692926 chr2R_3692443_3692444;chr2R_3692926_3692927 chr2R_3691017_3692443;chr2R_3692927_3693071 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 10.53 NA NA NA NA NA NA NA NA NA K alternative_donor CG16936,RI_chr2R_20655101_20655166,I_chr2R_20660319_20660496 chr2R - chr2R_20655101_20655620;chr2R_20655101_20655476;chr2R_20655101_20655166 chr2R_20655101_20655161 chr2R_20655001_20655100;chr2R_20655621_20655665 1.85 1.45 0.00 2.56 0.00 0.00 2.04 0.81 0.75 1.85 0.00 0.89 0.00 0.00 2.00 1.92 0.00 71.43 2.00 3.60 0.00 11.11 1.45 3.00 3.33 0.00 4.35 0.00 7.41 3.45 6.78 4.44 1.61 1.06 2.22 8.33 3.30 1.54 1.37 1.80 5.13 0.73 0.00 1.96 7.23 6.38 3.08 9.43 1.39 1.25 2.30 0.00 1.43 1.96 3.57 1.35 0.83 4.95 K jcn_only_AA Dscam,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3254472_3255892;chr2R_3253610_3255892;chr2R_3250700_3255892;chr2R_3252685_3255892;chr2R_3251854_3255892;chr2R_3252399_3255892;chr2R_3250996_3255892;chr2R_3254133_3255892;chr2R_3252123_3255892;chr2R_3252988_3255892 chr2R_3251271_3255892 chr2R_3255893_3255920 3.70 0.00 5.13 9.52 3.12 2.38 3.70 4.88 0.00 NA NA 10.39 NA 0.00 0.00 6.67 0.00 NA 0.00 6.67 3.12 2.67 0.00 2.56 0.00 10.00 0.00 4.17 4.65 4.65 2.78 NA 1.82 4.35 0.00 11.54 7.58 3.23 4.62 1.49 NA 0.00 5.00 2.56 NA 8.70 3.70 0.00 7.41 5.00 4.55 0.00 NA NA 4.00 4.35 4.35 NA K intron_retention I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,I_chr3R_17183927_17184513,I_chr3R_17183927_17185306,RI_chr3R_17184319_17184513,I_chr3R_17184319_17185084,I_chr3R_17184319_17185284,noncoding_18168,RI_chr3R_17184792_17185306,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,RI_chr3R_17189607_17189988,I_chr3R_17190098_17190207,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17183927_17184082 chr3R_17183926_17183927;chr3R_17184082_17184083 chr3R_17183827_17183926;chr3R_17184083_17184264 32.00 33.33 39.29 40.48 47.62 37.50 33.33 47.62 32.81 15.00 40.91 37.25 44.00 47.06 42.11 35.29 34.78 47.83 32.00 44.62 25.93 48.39 25.53 31.58 13.16 20.69 26.47 20.83 21.88 28.57 13.79 36.36 46.34 32.43 36.00 26.47 24.44 25.00 34.00 28.30 25.00 33.33 22.22 17.86 46.15 36.36 19.51 31.25 38.89 21.62 28.57 38.10 13.16 30.77 26.92 24.44 15.25 26.32 K alternative_donor l(2)37Cb chr2L - chr2L_19126513_19126575 chr2L_19126513_19126573 chr2L_19126376_19126512;chr2L_19126576_19126950 100.00 94.44 100.00 100.00 100.00 100.00 93.75 100.00 95.83 100.00 93.33 100.00 NA 100.00 100.00 94.74 100.00 100.00 100.00 97.14 100.00 100.00 96.00 100.00 100.00 100.00 95.00 94.12 96.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 93.75 94.74 100.00 100.00 96.15 92.31 94.12 93.33 100.00 100.00 100.00 96.88 90.00 94.74 87.50 100.00 100.00 92.86 100.00 92.86 100.00 K intron_retention E(bx),I_chr3L_239186_239264,I_chr3L_246324_246699 chr3L - chr3L_235346_235409 chr3L_235345_235346;chr3L_235409_235410 chr3L_234982_235345;chr3L_235410_235509 0.00 3.70 0.00 11.36 0.00 0.00 0.00 3.12 0.00 0.00 0.00 1.69 0.00 0.00 0.00 5.41 0.00 0.00 2.27 0.00 0.00 10.42 0.00 0.00 NA 5.71 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 K cassette stj chr2R + chr2R_9702292_9703059 chr2R_9702292_9702472;chr2R_9702530_9703059 chr2R_9702473_9702529 chr2R_9702149_9702291;chr2R_9703060_9703153 1.92 0.00 NA 2.78 0.00 NA 3.45 0.00 0.00 3.92 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 1.92 NA 4.00 2.44 2.27 0.00 10.53 5.13 4.17 0.00 2.94 4.17 5.56 2.27 0.00 0.00 2.60 1.52 2.38 0.00 0.00 3.03 0.00 NA 0.00 4.65 2.38 2.56 4.92 0.00 5.56 2.13 0.00 1.30 0.00 0.00 0.00 2.44 3.40 K intron_retention CG7185 chr3L - chr3L_8306252_8307056 chr3L_8306251_8306252;chr3L_8307056_8307057 chr3L_8306111_8306251;chr3L_8307057_8307776 1.27 0.00 0.00 6.45 0.00 0.00 0.00 5.26 1.47 0.00 0.00 3.57 14.29 0.00 0.00 11.54 0.00 0.00 4.00 6.15 0.00 0.00 2.27 3.57 0.00 0.00 0.00 10.81 7.69 9.30 3.33 0.00 3.03 0.00 6.25 5.88 1.27 4.65 1.27 7.25 5.26 2.90 0.00 0.00 2.11 3.39 0.00 5.26 5.17 0.00 0.00 0.00 3.12 1.54 2.27 0.00 0.00 0.00 K alternative_acceptor CG4877 chr3L + chr3L_16379595_16379772;chr3L_16379595_16379725 chr3L_16379595_16379731 chr3L_16379486_16379594;chr3L_16379773_16380052 63.64 NA NA 62.50 NA NA 50.00 62.50 42.86 NA NA 50.00 NA NA NA 80.00 NA 40.00 NA 63.64 NA NA 88.89 NA 80.00 NA NA 50.00 NA NA NA NA NA 75.00 NA NA NA NA 40.00 40.00 NA 72.73 NA NA NA NA NA NA 66.67 NA 71.43 NA 66.67 NA 75.00 NA NA NA N alternative_acceptor sax,CG1882 chr2R + chr2R_3700498_3700802 chr2R_3700498_3700785 chr2R_3699932_3700497;chr2R_3700803_3702250 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N cassette par-1,RI_chr2R_15348122_15356294,I_chr2R_15355073_15356294,RI_chr2R_15355419_15356294,I_chr2R_15359251_15360944,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15348122_15358101;chr2R_15353200_15358101 chr2R_15353200_15356294,chr2R_15348122_15356294;chr2R_15357844_15358101 chr2R_15356295_15357843 chr2R_15348022_15348121;chr2R_15358102_15358317 42.77 42.78 36.22 36.26 44.83 38.20 46.45 36.33 46.54 50.63 41.13 36.93 33.33 41.57 35.19 41.41 36.67 36.73 40.13 41.79 37.24 55.19 45.81 43.03 45.26 50.64 49.37 56.00 52.78 44.24 36.67 44.12 69.02 43.94 44.22 57.27 42.58 40.57 37.04 41.75 51.59 45.27 43.48 47.03 52.14 46.45 40.00 57.49 38.87 42.77 43.39 40.96 37.96 33.09 40.91 38.89 41.18 56.80 K intron_retention SWAP,RI_chrX_936466_936762,I_chrX_936466_936835,RI_chrX_936919_937245,RI_chrX_938935_938985,I_chrX_941459_982652 chrX + chrX_936466_936835 chrX_936465_936466;chrX_936835_936836 chrX_936366_936465;chrX_936836_936862 90.00 100.00 90.00 88.89 NA NA 88.89 94.74 100.00 NA NA 92.86 90.00 90.00 100.00 100.00 100.00 NA 100.00 93.33 NA 81.82 76.92 NA NA NA NA NA 61.54 81.82 93.75 NA 85.71 92.86 NA NA 88.89 100.00 NA 83.33 46.67 94.12 NA 100.00 NA 80.00 NA 76.19 93.33 88.89 77.78 100.00 NA NA 100.00 NA NA 81.82 K intron_retention dwg,RI_chrX_2622297_2622355,RI_chrX_2622297_2622430,RI_chrX_2622435_2622577,RI_chrX_2627170_2627263 chrX + chrX_2622435_2622577 chrX_2622434_2622435;chrX_2622577_2622578 chrX_2622434_2622434;chrX_2622578_2622677 93.33 NA NA 100.00 NA 87.50 92.86 100.00 93.33 NA NA 90.91 NA NA 100.00 90.91 NA 100.00 88.89 94.44 100.00 100.00 90.91 100.00 NA 91.67 87.50 NA 88.89 NA 96.88 NA 94.12 100.00 90.00 91.67 90.91 NA 100.00 93.75 100.00 93.33 NA 100.00 91.67 93.75 92.86 91.67 88.89 69.23 93.33 88.89 NA 100.00 NA 100.00 87.50 100.00 K alternative_acceptor Chro,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22871326_22871733 chr3L_22871351_22871733 chr3L_22871734_22871779;chr3L_22871251_22871325 24.21 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA N alternative_acceptor SD23414,CG9132,I_chrX_16696492_16696589 chrX - chrX_16692699_16692782 chrX_16692718_16692782 chrX_16692783_16692991;chrX_16691549_16692698 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 69.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG5953,snoRNA:Me28S-C1237 chr2L - chr2L_16528440_16532720 chr2L_16528439_16528440;chr2L_16532720_16532721 chr2L_16527390_16528439;chr2L_16532721_16532862 35.71 NA 25.00 92.31 NA 36.36 82.61 46.43 47.22 NA 23.53 29.03 66.67 33.33 29.41 41.46 NA 57.14 31.25 31.25 18.52 NA 53.33 42.11 NA 58.33 63.16 61.54 60.00 13.33 40.00 35.71 45.45 41.38 22.73 60.00 NA NA 25.00 35.71 23.08 30.30 41.67 30.77 NA 12.00 31.25 23.08 48.39 30.77 57.89 NA NA 22.22 28.57 21.05 NA 22.22 K jcn_only_AD nrv2,I_chr2L_6791842_6794492,I_chr2L_6793397_6794492,I_chr2L_6793405_6793916,I_chr2L_6793405_6794499,I_chr2L_6793684_6794492 chr2L - chr2L_6793405_6794328;chr2L_6793405_6794492;chr2L_6793405_6794551 chr2L_6793405_6794316 chr2L_6793305_6793404;chr2L_6794552_6794592 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 1.09 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.33 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG10737 chr2R + chr2R_15062592_15063752;chr2R_15062814_15063752 chr2R_15062754_15063752 chr2R_15063753_15063852;chr2R_15062387_15062591 30.77 32.99 26.67 47.62 33.78 9.09 19.23 22.67 32.98 23.26 31.43 29.41 21.92 20.29 13.58 45.36 23.94 37.35 20.48 29.69 28.79 48.00 38.71 27.36 29.23 40.26 50.00 44.44 24.66 36.96 16.16 18.60 64.56 45.14 43.04 24.39 57.76 38.37 30.77 29.07 10.34 30.73 32.86 25.86 28.12 14.47 22.64 41.61 32.78 56.25 32.00 34.38 31.76 31.65 25.49 43.52 28.97 37.91 K intron_retention Cap-H2 chr3R + chr3R_6591851_6592190 chr3R_6591850_6591851;chr3R_6592190_6592191 chr3R_6591750_6591850;chr3R_6592191_6592311 100.00 NA NA 100.00 NA NA 100.00 100.00 94.74 NA NA 91.67 NA 100.00 NA 100.00 NA NA NA 92.86 NA NA 100.00 100.00 NA NA 92.86 NA NA NA NA 88.89 88.89 93.75 88.89 100.00 NA NA NA 100.00 100.00 100.00 100.00 100.00 NA 94.12 NA 100.00 93.75 100.00 100.00 NA 100.00 91.67 NA 90.91 90.91 91.67 N alternative_donor CG11151 chrX + chrX_13634528_13634710;chrX_13634146_13634710 chrX_13634652_13634710 chrX_13634711_13635156;chrX_13633982_13634145 0.25 0.24 0.21 0.17 0.41 0.26 0.28 0.32 0.93 0.37 0.00 0.55 0.45 0.68 0.22 0.52 0.38 0.35 0.25 0.37 0.00 0.77 0.23 0.22 0.75 0.00 0.47 0.65 0.00 0.19 0.20 0.38 0.11 0.52 0.51 0.00 0.21 0.23 0.15 0.30 0.21 0.39 0.60 0.00 0.11 0.12 0.20 0.00 0.59 0.62 0.21 0.47 0.23 0.27 0.22 0.46 0.13 0.08 K intron_retention CG6006 chr3R + chr3R_11984029_11984579 chr3R_11984028_11984029;chr3R_11984579_11984580 chr3R_11984019_11984028;chr3R_11984580_11984637 67.95 NA NA 77.78 NA NA 42.86 76.92 69.23 NA NA 69.23 NA NA NA 54.55 NA NA NA 64.29 NA NA NA NA NA 60.00 NA NA NA NA 80.00 NA NA 66.67 NA NA NA NA NA 72.73 NA 58.82 NA NA NA NA NA NA 70.59 NA 60.00 NA NA NA NA NA NA NA K cassette Eb1,RI_chr2R_2640290_2642206,I_chr2R_2640494_2642206,I_chr2R_2642491_2642549 chr2R + chr2R_2640290_2642206 chr2R_2640290_2640347;chr2R_2640494_2642206 chr2R_2640348_2640493 chr2R_2640190_2640289;chr2R_2642207_2642306 99.46 99.32 100.00 98.08 99.22 100.00 99.55 98.21 99.73 98.67 99.17 99.62 100.00 99.27 98.90 99.62 100.00 99.36 99.40 99.74 100.00 99.18 99.61 99.51 100.00 98.76 99.46 98.61 97.59 99.01 99.56 100.00 98.36 100.00 100.00 99.10 99.45 100.00 99.50 99.42 100.00 99.69 100.00 99.45 98.67 98.58 100.00 98.81 99.71 99.35 100.00 99.32 99.02 99.22 100.00 99.39 100.00 100.00 K jcn_only_AA CG32813 chrX + chrX_1284091_1284308 chrX_1284091_1284281 chrX_1283634_1284090;chrX_1284309_1286331 4.55 NA NA 12.50 NA 8.33 14.29 NA 5.56 NA NA 4.76 NA NA NA 4.55 NA NA NA 2.50 NA 2.44 0.00 NA 3.33 NA 8.70 NA 3.92 0.00 NA 0.00 8.75 7.41 0.00 40.91 6.00 10.00 13.16 2.17 14.81 8.11 NA 6.90 4.55 0.00 9.52 7.27 0.00 NA 3.85 NA 0.00 0.00 0.00 0.00 7.41 2.38 K intron_retention CG6845,I_chr3L_148414_148489 chr3L + chr3L_147667_147729 chr3L_147666_147667;chr3L_147729_147730 chr3L_147453_147666;chr3L_147730_147883 92.86 100.00 100.00 91.67 100.00 92.86 92.00 81.25 88.57 88.89 100.00 93.55 81.25 92.86 92.86 100.00 92.31 70.00 87.50 92.50 90.00 90.48 95.00 92.31 100.00 90.00 100.00 100.00 93.75 94.12 91.30 95.24 100.00 96.30 100.00 100.00 100.00 92.86 NA 92.59 100.00 96.97 92.86 76.47 88.89 100.00 90.91 96.55 96.97 88.89 100.00 91.67 NA 88.89 94.74 91.67 100.00 97.22 K intron_retention CSN8,I_chr2L_8365282_8365388,I_chr2L_8367210_8367311 chr2L + chr2L_8365105_8365152 chr2L_8365104_8365105;chr2L_8365152_8365153 chr2L_8365040_8365104;chr2L_8365153_8365281 1.64 1.64 0.00 11.43 0.00 0.00 3.70 7.41 4.88 0.00 0.00 4.17 5.26 2.38 2.56 3.70 5.00 0.00 4.44 3.88 0.00 0.00 3.03 2.60 2.56 0.00 11.48 17.86 0.00 5.00 6.12 0.00 0.00 1.37 0.00 12.20 0.00 0.00 0.00 2.90 4.76 1.33 0.00 0.00 0.00 2.73 1.03 0.00 2.56 0.00 1.19 5.00 3.57 0.00 3.39 5.19 0.00 0.00 K intron_retention SRPK chr2R + chr2R_11269919_11270907 chr2R_11269918_11269919;chr2R_11270907_11270908 chr2R_11269355_11269918;chr2R_11270908_11271804 0.00 0.00 0.00 2.17 0.00 0.00 0.00 1.96 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Ca-P60A,RI_chr2R_19820338_19820541,I_chr2R_19820338_19821424,CEI_chr2R_19820338_19821830,I_chr2R_19820338_19823289 chr2R - chr2R_19820338_19820955;chr2R_19820338_19820781;chr2R_19820338_19820765 chr2R_19820338_19820817 chr2R_19820238_19820337;chr2R_19820956_19820969 0.53 0.00 0.40 1.04 0.56 0.00 0.00 0.46 0.39 0.53 0.00 0.53 0.41 0.00 0.00 0.00 1.10 1.05 0.00 1.19 0.00 2.54 0.81 1.02 1.52 0.00 0.50 2.14 0.53 0.00 0.00 1.87 0.54 0.00 0.00 1.20 1.60 0.87 0.55 0.85 0.58 0.21 0.56 0.00 0.71 0.53 0.71 0.38 0.50 1.08 0.00 0.00 0.75 1.25 1.00 0.85 0.76 0.39 K jcn_only_AA cul-2,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21661637_21662083 chr2L_21661637_21661945 chr2L_21661537_21661636;chr2L_21662084_21662183 0.00 0.00 3.51 0.86 0.00 1.96 0.00 0.65 1.14 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 2.38 1.12 0.81 2.17 0.65 0.70 1.49 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 2.47 1.11 0.91 0.00 0.95 6.06 0.00 0.00 0.00 0.93 0.00 1.14 1.59 0.00 2.27 0.00 0.00 0.00 1.28 K jcn_only_AA I_chr3L_834336_834491,CG13887,Gr61a chr3L + chr3L_837946_838012;chr3L_837946_838021 chr3L_837946_838048 chr3L_837877_837945;chr3L_838049_838624 96.39 98.04 96.30 96.75 94.44 98.15 95.34 94.63 96.39 98.51 94.00 94.17 91.11 92.45 95.83 94.92 95.00 96.00 93.55 95.43 96.67 100.00 98.04 100.00 96.97 94.87 95.45 91.67 96.92 97.06 98.48 98.77 100.00 95.14 100.00 100.00 100.00 90.24 100.00 99.22 97.16 95.68 95.83 96.30 97.62 95.71 91.67 96.08 98.09 95.24 96.77 98.51 NA NA 95.74 100.00 98.48 97.90 K jcn_only_AD CG32264,RI_chr3L_3769407_3803313 chr3L - chr3L_3723873_3767136 chr3L_3723873_3741995 chr3L_3723639_3723872 0.00 0.00 5.00 4.35 0.00 0.00 NA 0.00 1.64 4.35 NA 2.08 0.00 NA 0.00 3.70 0.00 0.00 0.00 0.00 NA 1.69 0.00 1.75 0.00 NA 0.00 5.00 10.34 0.00 4.55 3.45 0.00 0.00 4.17 2.56 0.00 1.52 1.92 2.56 0.00 0.00 NA 0.00 0.00 0.00 2.04 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 K cassette CG31243,CG42457 chr3R + chr3R_13836297_13837817 chr3R_13836297_13836818;chr3R_13837436_13837817 chr3R_13836819_13837435 chr3R_13836063_13836296;chr3R_13837818_13837854 40.00 50.00 25.00 60.00 NA 20.00 42.86 36.36 47.62 50.00 NA 38.10 33.33 40.00 22.22 30.00 28.57 30.00 33.33 36.84 NA 70.00 36.84 36.36 57.14 NA 30.00 83.33 50.00 44.44 33.33 66.67 61.11 50.00 42.86 60.00 42.31 60.00 55.56 40.00 33.33 50.00 22.22 53.85 66.67 55.56 40.00 61.54 60.00 28.57 50.00 33.33 36.36 33.33 30.00 33.33 33.33 33.33 K intron_retention I_chr2R_4783150_4783708,Ggamma1,noncoding_5300 chr2R + chr2R_4789028_4789645 chr2R_4789027_4789028;chr2R_4789645_4789646 chr2R_4789007_4789027;chr2R_4789646_4789782 100.00 100.00 100.00 95.65 NA NA 94.74 100.00 96.55 NA 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 91.67 NA NA 96.30 88.89 100.00 100.00 92.86 100.00 95.24 100.00 100.00 100.00 NA 90.91 100.00 NA NA 100.00 100.00 NA 100.00 K intron_retention SMC2,I_chr2R_10737857_10737917 chr2R - chr2R_10739833_10739891 chr2R_10739832_10739833;chr2R_10739891_10739892 chr2R_10739521_10739832;chr2R_10739892_10740071 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention C3G chrX - chrX_6680846_6681383 chrX_6680845_6680846;chrX_6681383_6681384 chrX_6680189_6680845;chrX_6681384_6681553 75.00 83.33 75.00 65.91 75.86 71.43 70.77 55.81 75.81 46.43 70.00 84.78 80.00 90.48 67.86 84.62 76.00 62.50 58.54 65.52 82.61 33.57 59.26 70.27 81.40 77.78 64.10 17.95 75.00 85.71 83.33 80.00 72.97 78.57 76.67 83.87 61.40 63.16 72.09 57.14 81.82 79.63 100.00 63.16 75.00 83.33 68.75 86.27 88.89 52.38 68.18 60.87 69.23 57.14 75.86 89.47 82.35 95.00 K alternative_last_exon F_chr3L_12534478_12557998,sowah chr3L - chr3L_12541597_12557998 chr3L_12557556_12557998 chr3L_12541528_12541596 chr3L_12556505_12557555 chr3L_12557999_12558098 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 7.69 0.00 0.00 7.14 4.00 0.00 0.00 NA 0.00 8.33 NA 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Liprin-alpha chr2L + chr2L_6724085_6724826 chr2L_6724085_6724177;chr2L_6724390_6724826 chr2L_6724178_6724389 chr2L_6723995_6724084;chr2L_6724827_6725096 9.52 6.67 3.85 11.11 NA 13.64 12.50 7.41 11.11 2.38 11.11 7.89 18.18 8.70 9.52 9.09 18.18 6.67 5.56 8.51 NA 19.05 5.56 6.25 12.50 15.00 19.05 13.04 9.52 12.90 15.00 11.76 7.58 9.52 3.85 8.82 8.96 11.76 8.00 4.55 12.50 7.41 NA 15.38 4.55 4.35 11.76 3.75 9.52 NA 10.81 12.00 18.18 7.69 9.52 7.69 8.33 3.45 K intron_retention mio,RI_chr2L_2224527_2224586,I_chr2L_2229179_2229265 chr2L + chr2L_2217772_2217829 chr2L_2217771_2217772;chr2L_2217829_2217830 chr2L_2217598_2217771;chr2L_2217830_2218081 5.00 6.38 0.00 10.00 0.00 2.78 11.11 0.00 8.77 18.18 6.45 0.00 0.00 0.00 0.00 2.56 0.00 7.69 0.00 4.49 8.70 10.53 1.56 5.08 17.50 10.53 3.33 19.05 14.81 5.77 23.08 9.09 10.29 0.00 8.33 20.00 7.25 0.00 3.95 7.69 43.75 2.74 0.00 5.00 7.69 7.14 2.94 9.26 2.00 3.23 5.00 14.29 0.00 4.35 2.63 6.25 0.00 2.27 K jcn_only_AA CG31211 chr3R + chr3R_7777961_7778362;chr3R_7777961_7778390 chr3R_7777961_7778368 chr3R_7777954_7777960;chr3R_7778391_7778487 0.00 0.00 0.00 2.86 NA 0.00 0.00 0.00 2.13 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 8.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 4.35 3.45 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.13 0.00 0.00 0.00 NA 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.17 0.00 2.38 K intron_retention p53,CG17119,sav chr3R - chr3R_18876847_18876911 chr3R_18876846_18876847;chr3R_18876911_18876912 chr3R_18876537_18876846;chr3R_18876912_18876980 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.55 NA NA NA NA NA NA NA NA K intron_retention mts,RI_chr2L_7828959_7830461 chr2L + chr2L_7831026_7831468 chr2L_7831025_7831026;chr2L_7831468_7831469 chr2L_7830462_7831025;chr2L_7831469_7831659 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.45 4.62 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.46 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD PGRP-LC,E_chr3L_9335847_9338977 chr3L + chr3L_9338168_9340739;chr3L_9340350_9340739 chr3L_9338225_9340739 chr3L_9340740_9340757 61.72 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 71.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 52.00 NA NA NA NA NA NA NA NA NA K cassette Ptpmeg,I_chr3L_353688_353782,I_chr3L_355125_355175 chr3L + chr3L_347780_351366 chr3L_347780_348122;chr3L_348218_351366 chr3L_348123_348217 chr3L_347766_347779;chr3L_351367_351663 5.33 5.88 9.09 2.94 7.69 11.76 3.85 3.85 7.50 NA 0.00 6.45 6.67 0.00 4.76 10.34 5.00 7.69 3.85 2.70 NA 66.67 0.00 5.00 NA 10.53 5.56 0.00 8.33 0.00 8.33 5.26 6.45 5.66 5.56 16.67 7.69 0.00 0.00 4.88 3.57 5.41 5.88 3.70 0.00 2.86 NA 3.70 4.65 6.67 6.67 NA NA NA 8.70 NA NA 0.00 K intron_retention CG40485 chrX - chrX_22363297_22363599 chrX_22363296_22363297;chrX_22363599_22363600 chrX_22363005_22363296;chrX_22363600_22364196 0.00 0.00 0.00 NA NA 0.00 0.00 NA 6.67 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 3.85 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 6.67 0.00 NA 5.00 0.00 0.00 2.44 6.67 0.00 NA 0.00 0.00 6.90 0.00 10.53 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG7656,I_chr3L_15580697_15581083 chr3L - chr3L_15580697_15581154;chr3L_15580697_15581083 chr3L_15580697_15581265 chr3L_15580597_15580696;chr3L_15581266_15581315 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 2.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 K alternative_acceptor Fcp1 chr2R - chr2R_20458389_20458456 chr2R_20458395_20458456 chr2R_20458457_20458550;chr2R_20457958_20458388 95.55 83.33 100.00 92.86 92.31 87.50 100.00 100.00 91.67 100.00 100.00 93.75 100.00 100.00 100.00 87.50 100.00 90.00 90.91 95.45 88.89 94.44 100.00 100.00 100.00 90.91 92.86 NA 100.00 100.00 100.00 100.00 95.83 93.75 91.67 92.86 96.67 100.00 94.44 95.65 90.00 95.65 100.00 100.00 92.86 100.00 92.31 100.00 100.00 90.91 94.44 100.00 92.31 92.31 100.00 92.86 90.91 92.31 K intron_retention CG10874 chr2L - chr2L_2190644_2190706 chr2L_2190643_2190644;chr2L_2190706_2190707 chr2L_2189869_2190643;chr2L_2190707_2190784 0.00 0.00 0.00 5.66 0.00 0.00 4.08 5.13 0.00 0.00 3.45 1.72 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 5.00 10.45 1.64 0.00 2.86 0.00 0.00 3.23 0.00 3.33 2.17 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 3.92 0.00 0.00 0.00 4.55 0.00 0.00 0.00 2.53 3.03 K intron_retention Stat92E,I_chr3R_16365079_16365145,att-ORFB chr3R - chr3R_16365079_16365121 chr3R_16365078_16365079;chr3R_16365121_16365122 chr3R_16364979_16365078;chr3R_16365122_16365188 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.68 8.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette mbl,I_chr2R_13163569_13203579 chr2R + chr2R_13239811_13260581 chr2R_13239811_13249484;chr2R_13249603_13260581 chr2R_13249485_13249602 chr2R_13239634_13239810;chr2R_13260582_13260610 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 K jcn_only_AD CG33558,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,EI_chr2R_2820947_2821570,CREI_chr2R_2832933_2850384 chr2R - chr2R_2817876_2819347;chr2R_2817876_2818567 chr2R_2817876_2818978 chr2R_2817851_2817875;chr2R_2819348_2819447 70.89 40.00 NA 54.55 NA NA NA NA 87.50 NA NA 60.98 NA NA NA NA NA NA NA 69.44 NA NA 65.22 53.19 40.00 NA NA NA 65.00 NA NA 75.00 81.58 68.18 NA 80.00 72.73 69.57 64.86 78.72 91.30 64.71 NA 72.73 72.22 91.11 73.33 90.91 NA 56.25 64.29 65.22 82.61 55.56 NA 74.29 88.89 90.91 K cassette unc-13,I_chr4_896337_896921,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_896337_896921 chr4_896337_896739;chr4_896866_896921 chr4_896740_896865 chr4_896237_896336;chr4_896922_897021 100.00 96.55 100.00 97.87 95.24 100.00 100.00 98.48 98.72 100.00 100.00 100.00 96.43 97.37 100.00 97.10 96.30 100.00 97.73 100.00 100.00 99.24 97.56 96.30 97.50 97.83 100.00 100.00 95.71 96.88 97.37 100.00 95.35 100.00 96.43 98.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 100.00 100.00 100.00 95.45 100.00 98.72 100.00 97.56 100.00 100.00 90.91 97.22 95.00 100.00 100.00 K jcn_only_AD CG5114 chr3L + chr3L_14976891_14977012 chr3L_14976951_14977012 chr3L_14977013_14977220;chr3L_14975948_14976890 0.98 1.23 2.00 0.80 2.94 0.00 3.09 3.10 0.77 1.69 0.00 0.63 1.23 1.49 0.97 2.75 2.86 0.00 0.00 0.57 1.56 3.41 2.38 0.92 5.48 3.61 1.98 1.08 0.93 2.27 0.00 0.00 2.65 2.40 1.15 0.00 0.00 1.11 0.00 2.00 0.82 1.32 4.69 1.25 0.77 0.66 0.00 0.00 0.66 2.61 0.00 2.04 0.00 0.00 0.98 0.90 0.00 0.00 K jcn_only_AA Eno,I_chr2L_1726650_1727645,I_chr2L_1726656_1727485,EI_chr2L_1727403_1727645,I_chr2L_1728229_1728302 chr2L - chr2L_1726650_1727645;chr2L_1727403_1727645;chr2L_1727559_1727645 chr2L_1726656_1727645 chr2L_1727646_1727735;chr2L_1726556_1726649 99.80 100.00 99.83 100.00 100.00 99.80 99.61 100.00 99.63 99.66 97.96 99.48 100.00 99.77 100.00 99.65 99.76 99.03 99.43 99.81 99.05 99.84 99.90 99.84 99.76 99.43 99.84 99.80 99.73 99.60 99.77 100.00 99.75 99.46 100.00 100.00 99.86 99.66 99.93 99.88 99.28 99.80 99.75 99.72 99.78 99.80 99.68 100.00 99.75 99.39 99.89 100.00 100.00 100.00 99.82 99.87 99.50 100.00 K alternative_acceptor CG42555,CEI_chr2L_16889126_16889216,I_chr2L_16889126_16889955,F_chr2L_16889126_16890182 chr2L + chr2L_16889126_16891457 chr2L_16889126_16889216 chr2L_16889026_16889125;chr2L_16891458_16891557 8.33 4.76 13.33 4.35 4.35 3.85 4.76 7.50 5.26 14.29 8.33 5.13 7.41 3.85 6.90 14.81 8.33 13.33 6.90 7.89 10.53 9.09 8.33 7.69 6.67 5.26 8.70 20.00 25.00 3.85 7.41 20.00 13.64 7.32 6.67 5.00 2.56 5.88 9.52 8.33 20.00 6.98 4.76 4.76 40.00 25.00 33.33 10.00 9.09 50.00 10.00 6.67 33.33 20.00 2.63 25.00 66.67 16.67 K intron_retention CG33057,mkg-p,Oseg1 chr3L - chr3L_8397611_8398313 chr3L_8397610_8397611;chr3L_8398313_8398314 chr3L_8397203_8397610;chr3L_8398314_8398372 52.78 NA 50.00 52.00 52.63 53.33 59.26 38.46 44.12 NA 42.11 46.67 33.33 NA 53.33 76.19 43.75 45.45 52.94 59.26 35.71 62.50 NA NA NA 82.35 NA 60.00 75.00 NA NA NA 70.00 35.00 NA NA 53.85 NA NA NA NA 40.00 70.00 45.45 NA NA NA NA 61.11 70.00 NA NA NA NA 31.58 NA NA NA K intron_retention eIF-4a,I_chr2L_5981836_5984010,I_chr2L_5983941_5984010,I_chr2L_5983591_5984010,I_chr2L_5985221_5985289 chr2L + chr2L_5981836_5983009 chr2L_5981835_5981836;chr2L_5983009_5983010 chr2L_5981737_5981835;chr2L_5983010_5983236 0.07 0.07 0.00 0.04 0.00 0.06 0.04 0.05 0.07 0.00 0.06 0.05 0.06 0.06 0.02 0.08 0.00 0.00 0.00 0.02 0.00 0.42 0.17 0.22 0.13 0.06 0.54 1.60 0.38 0.49 0.00 0.12 0.27 0.08 0.31 0.00 0.08 0.00 0.08 0.43 0.00 0.06 0.00 0.49 0.00 0.37 0.00 0.50 0.00 0.27 0.19 0.20 0.13 0.94 0.08 0.16 0.16 0.43 K cassette CG34394,I_chr2L_3365674_3365965 chr2L - chr2L_3367720_3372778 chr2L_3367720_3367903;chr2L_3368195_3372778 chr2L_3367904_3368194 chr2L_3367245_3367719;chr2L_3372779_3372820 95.83 92.86 97.78 87.72 96.67 96.97 92.45 87.50 98.80 100.00 96.67 98.51 96.67 97.06 97.50 97.92 96.88 97.06 94.44 86.67 97.22 95.24 97.96 92.68 96.15 96.67 89.19 92.50 85.29 95.24 91.30 95.24 96.08 95.16 96.77 85.71 87.50 96.55 100.00 98.59 94.74 95.00 88.46 100.00 88.00 96.88 96.88 98.15 92.11 95.24 93.18 100.00 95.83 94.74 95.35 95.65 95.24 100.00 K intron_retention RpS3A,I_chr4_87364_87465,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87533_87717 chr4_87532_87533;chr4_87717_87718 chr4_87466_87532;chr4_87718_87817 99.99 99.97 99.97 99.98 99.96 100.00 100.00 100.00 99.99 99.93 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.97 99.96 100.00 99.95 99.96 99.96 99.94 99.85 99.95 99.77 99.99 99.96 100.00 100.00 100.00 99.97 99.98 99.92 99.99 100.00 100.00 99.89 99.95 99.97 99.96 100.00 99.89 99.97 100.00 99.96 99.97 100.00 100.00 100.00 100.00 K intron_retention Ndc80,tth chrX - chrX_13505851_13505912 chrX_13505850_13505851;chrX_13505912_13505913 chrX_13505791_13505850;chrX_13505913_13506115 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 2.04 NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.48 0.00 0.00 NA 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD dorsal,RI_chr2L_17438018_17439189,FI_chr2L_17449369_17450215,noncoding_3500,RI_chr2L_17450002_17450219 chr2L - chr2L_17449369_17450325;chr2L_17449369_17449875;chr2L_17449369_17450219;chr2L_17449369_17450215 chr2L_17449369_17450310 chr2L_17449296_17449368;chr2L_17450326_17450359 2.99 2.00 4.88 4.85 11.43 2.63 2.13 1.74 6.57 4.55 0.00 2.05 3.57 6.15 1.25 3.03 4.55 0.00 5.19 3.06 4.69 5.05 1.00 0.00 0.00 6.00 0.00 0.00 6.25 3.96 2.99 1.04 4.17 3.70 0.00 0.00 3.45 3.23 2.27 2.92 4.96 2.36 4.35 3.23 6.35 3.47 0.00 3.17 2.68 1.75 2.22 5.63 0.00 0.00 4.17 1.49 0.00 2.60 K alternative_acceptor Chro,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22869485_22869556 chr3L_22869491_22869556 chr3L_22869557_22870488;chr3L_22868224_22869484 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 94.74 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 K intron_retention CLIP-190,I_chr2L_17394493_17404060,I_chr2L_17401291_17404060,F_chr2L_17401582_17401681,I_chr2L_17401582_17402303 chr2L + chr2L_17401291_17401518 chr2L_17401290_17401291;chr2L_17401518_17401519 chr2L_17401191_17401290;chr2L_17401519_17401581 19.20 20.83 26.67 23.53 NA 13.04 38.46 8.70 17.14 NA 0.00 17.65 80.00 26.67 25.93 27.78 NA 21.43 26.32 14.29 NA 36.84 21.88 12.00 29.41 NA 19.05 47.37 43.75 50.00 25.00 14.29 17.95 19.35 21.43 0.00 6.45 8.00 14.29 21.95 NA 20.59 33.33 18.75 15.38 15.00 NA 21.21 18.18 26.32 18.52 4.35 NA 12.50 0.00 14.29 NA 9.09 K alternative_acceptor kis,RI_chr2L_242745_242800,I_chr2L_242926_250756 chr2L - chr2L_242563_250756 chr2L_242745_250756 chr2L_250757_250774;chr2L_242508_242562 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.02 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 NA 100.00 98.80 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 97.30 94.59 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 K alternative_donor Parp chr3RHet + chr3RHet_1936888_1936946 chr3RHet_1936892_1936946 chr3RHet_1936947_1937280;chr3RHet_1936750_1936887 100.00 NA NA 92.31 88.89 100.00 93.75 92.00 96.43 NA NA 100.00 91.67 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 NA NA NA NA 88.89 NA NA NA NA 88.89 NA NA 94.74 NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA 90.48 NA NA NA NA NA 100.00 NA NA NA K intron_retention Rala,noncoding_21767 chrX - chrX_3604282_3610504 chrX_3604281_3604282;chrX_3610504_3610505 chrX_3604102_3604281;chrX_3610505_3610565 11.71 NA NA 15.79 5.88 NA NA 12.00 11.43 NA NA 17.65 NA NA NA NA NA NA NA 8.33 14.29 NA 18.75 13.33 NA NA NA NA NA NA NA NA NA 5.56 NA NA 10.53 NA 12.50 14.29 NA 10.53 NA NA NA NA NA NA 5.56 NA 6.67 NA NA NA NA NA NA NA K intron_retention CG12753,I_chr3R_12265080_12265169,Pak3 chr3R - chr3R_12265080_12265334 chr3R_12265079_12265080;chr3R_12265334_12265335 chr3R_12264980_12265079;chr3R_12265335_12266125 0.00 5.13 6.06 2.27 0.00 0.00 6.12 0.00 1.47 0.00 0.00 9.09 13.33 8.00 0.00 5.13 0.00 0.00 0.00 1.67 0.00 0.00 4.29 4.65 6.25 0.00 0.00 NA 0.00 2.70 0.00 0.00 5.00 7.32 10.71 0.00 0.00 0.00 0.00 3.03 0.00 3.39 0.00 0.00 0.00 7.41 0.00 0.00 3.70 8.70 0.00 0.00 0.00 0.00 6.67 5.26 3.70 0.00 K jcn_only_AA cora,F_chr2R_15122674_15122975,I_chr2R_15129291_15129988 chr2R + chr2R_15117159_15122975 chr2R_15117159_15122625 chr2R_15116929_15117158 96.67 96.00 98.18 77.42 98.36 98.65 96.62 95.26 98.65 97.73 97.66 96.53 100.00 98.99 94.17 97.01 96.67 97.22 98.33 98.44 97.22 94.44 95.31 98.68 89.36 88.46 97.50 95.83 91.30 92.78 97.39 96.15 91.18 96.79 91.14 74.11 99.01 98.86 98.18 96.77 85.14 98.36 97.03 98.40 88.89 95.40 93.02 96.26 96.95 94.44 98.46 98.65 98.21 91.89 95.05 96.30 94.20 95.08 K intron_retention CG1970,RI_chr4_589928_590587,I_chr4_590970_591030 chr4 - chr4_589683_589739 chr4_589682_589683;chr4_589739_589740 chr4_588926_589682;chr4_589740_589927 2.76 0.72 0.75 4.41 3.06 0.00 3.95 4.40 3.03 0.00 1.03 4.20 1.72 3.57 2.67 2.51 0.00 2.99 3.82 2.33 0.00 4.17 2.84 2.13 0.00 4.44 5.98 4.23 2.27 3.36 3.23 1.61 7.44 3.17 2.25 10.81 1.33 1.77 2.13 1.83 8.14 3.45 5.68 0.49 3.25 3.41 2.47 4.65 3.21 0.00 2.45 3.60 2.76 0.00 1.13 2.67 1.67 2.91 K jcn_only_AA CG2982,norpA chrX + chrX_4213537_4213602 chrX_4213537_4213598 chrX_4213526_4213536;chrX_4213603_4215778 98.44 NA NA NA NA NA 92.86 NA 100.00 NA NA 100.00 100.00 NA NA 95.00 NA NA NA 96.43 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 96.55 NA NA NA NA NA NA NA 96.88 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA K intron_retention CG9578 chrX + chrX_20065099_20065162 chrX_20065098_20065099;chrX_20065162_20065163 chrX_20064879_20065098;chrX_20065163_20065559 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.44 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 1.96 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Fps85D,I_chr3R_5194729_5194776,I_chr3R_5216796_5218450 chr3R - chr3R_5198991_5199052 chr3R_5199003_5199052 chr3R_5199053_5199389;chr3R_5198712_5198990 4.82 8.43 4.35 1.16 1.35 3.17 3.16 3.30 4.55 4.84 8.47 6.52 9.76 2.82 6.52 1.92 6.25 4.05 3.39 5.16 2.90 2.72 2.63 2.06 7.69 5.08 4.49 3.45 4.82 3.53 10.75 0.00 0.98 4.26 6.45 6.15 5.44 10.34 5.00 1.54 5.97 7.96 7.32 2.16 9.52 6.17 7.81 6.60 5.83 8.22 3.28 2.63 5.88 0.00 5.75 1.75 5.26 1.52 K intron_retention gammaCop,rod chr3R + chr3R_27398001_27398219 chr3R_27398000_27398001;chr3R_27398219_27398220 chr3R_27397876_27398000;chr3R_27398220_27398878 0.00 0.00 0.00 6.38 NA 0.00 9.68 2.94 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 4.65 0.00 15.00 3.70 5.26 11.76 18.75 0.00 1.82 5.56 0.00 0.00 0.00 0.00 3.85 NA 0.00 1.72 3.85 0.00 0.00 10.26 0.00 10.26 0.00 5.41 2.08 0.00 0.00 NA 0.00 0.00 5.26 0.00 0.00 0.00 K intron_retention PMCA,I_chr4_350028_350896,E_chr4_350055_363541,I_chr4_350064_350896,I_chr4_350959_363547,I_chr4_352629_354970,I_chr4_352629_358161,RI_chr4_355160_363547,I_chr4_371836_372509,I_chr4_373671_374568,I_chr4_376108_379519 chr4 - chr4_350966_352240 chr4_350965_350966;chr4_352240_352241 chr4_350897_350965;chr4_352241_352628 98.86 100.00 100.00 98.68 96.00 100.00 98.86 100.00 98.20 91.67 95.83 98.65 100.00 100.00 97.67 98.75 97.83 100.00 100.00 98.73 100.00 80.95 96.97 95.83 100.00 100.00 100.00 100.00 91.67 100.00 95.00 100.00 100.00 100.00 100.00 92.31 94.74 94.74 93.33 94.44 94.74 100.00 100.00 97.06 100.00 100.00 100.00 96.55 100.00 100.00 96.15 95.65 100.00 100.00 98.25 96.15 95.65 100.00 N jcn_only_AD CG9674,I_chr3L_16785706_16785748,I_chr3L_16793055_16800660 chr3L - chr3L_16789438_16792144 chr3L_16789438_16791271 chr3L_16788351_16789437;chr3L_16792145_16792272 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG32176,RI_chr3L_17427238_17427301 chr3L + chr3L_17427238_17427351 chr3L_17427238_17427288 chr3L_17427138_17427237;chr3L_17427352_17427401 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 95.24 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA 100.00 100.00 K intron_retention hts,I_chr2R_15311185_15312327,I_chr2R_15311303_15311544,I_chr2R_15311303_15312026 chr2R - chr2R_15311303_15311548 chr2R_15311302_15311303;chr2R_15311548_15311549 chr2R_15311203_15311302;chr2R_15311549_15311585 21.37 16.67 27.27 56.25 NA NA 28.57 25.00 16.22 NA NA 11.11 11.11 40.00 10.53 28.57 17.65 NA 22.73 20.00 NA NA NA 26.67 NA 14.29 NA NA NA NA 25.00 NA NA 25.00 NA NA NA NA NA NA NA 25.71 12.50 NA NA NA NA NA 10.81 NA NA NA NA NA 15.00 NA NA NA K alternative_acceptor Dsp1,I_chrX_16228447_16229355,I_chrX_16231287_16231413 chrX + chrX_16228447_16230320;chrX_16228447_16230323 chrX_16228447_16230299 chrX_16228347_16228446;chrX_16230324_16230776 15.91 18.18 10.87 11.48 16.00 17.50 17.54 14.47 17.35 26.47 12.12 17.65 12.50 14.89 19.51 17.39 18.18 17.95 9.43 15.60 11.11 36.59 23.73 15.91 16.67 13.33 29.79 33.33 16.00 17.14 12.20 17.39 12.00 16.44 13.79 10.53 11.11 8.89 18.75 13.11 7.14 14.29 13.33 17.95 13.33 18.18 15.15 12.50 16.09 20.45 10.94 15.79 10.34 7.41 20.93 10.71 20.59 21.43 K multi_cassette CLIP-190,I_chr2L_17394493_17404060,I_chr2L_17401291_17404060,F_chr2L_17401582_17401681,I_chr2L_17401582_17402303 chr2L + chr2L_17401291_17404060 chr2L_17401291_17401515;chr2L_17401582_17402374;chr2L_17402486_17404060 chr2L_17401516_17401581;chr2L_17402375_17402485 chr2L_17401191_17401290;chr2L_17404061_17404076 100.00 100.00 88.89 100.00 100.00 100.00 NA 100.00 100.00 100.00 85.71 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 90.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Vrp1,I_chr2R_17996482_17997091,I_chr2R_17996511_17997091,I_chr2R_17997529_17997692 chr2R - chr2R_17996511_17997091 chr2R_17996510_17996511;chr2R_17997091_17997092 chr2R_17996487_17996510;chr2R_17997092_17997191 88.89 NA 60.00 NA NA NA 92.31 100.00 85.71 NA 100.00 NA NA NA NA NA NA 100.00 NA NA 87.50 73.13 NA NA 77.78 90.91 80.00 81.25 NA 88.89 NA NA NA 88.89 NA 88.89 66.67 NA 92.31 90.91 NA 90.00 NA 92.31 NA NA NA NA NA 81.25 83.33 NA NA NA NA 100.00 NA NA K cassette ssp4,I_chr2R_13409412_13410357,RI_chr2R_13409412_13411004,I_chr2R_13409412_13411328,I_chr2R_13409412_13411588,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13409406_13411004;chr2R_13408434_13411328;chr2R_13408434_13411588;chr2R_13408434_13411004;chr2R_13409406_13411328;chr2R_13409406_13411588 chr2R_13408434_13410357,chr2R_13409406_13410357;chr2R_13410466_13411588,chr2R_13410466_13411004,chr2R_13410466_13411328 chr2R_13410358_13410465 chr2R_13408151_13408433;chr2R_13411589_13411688 7.32 10.71 9.09 4.62 5.26 10.71 3.80 10.00 10.26 8.33 2.94 9.23 5.88 5.26 9.76 12.50 5.71 12.20 9.09 14.86 12.50 4.62 10.53 10.00 3.57 4.76 4.88 0.00 5.56 9.68 7.41 4.35 6.25 8.51 7.32 3.12 4.35 4.35 3.77 3.49 3.03 9.21 5.26 4.65 2.78 3.70 10.34 13.04 9.09 4.17 12.96 12.90 7.69 10.53 8.51 2.86 6.67 12.50 N cassette Dscam,F_chr2R_3219886_3228832,F_chr2R_3226043_3235353,F_chr2R_3227948_3235353,F_chr2R_3228738_3235353,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3219886_3235353 chr2R_3219886_3229212;chr2R_3229501_3235353 chr2R_3229213_3229500 chr2R_3219786_3219885;chr2R_3235354_3235453 100.00 22.22 41.67 27.59 NA 100.00 46.67 35.00 100.00 100.00 NA 100.00 28.57 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 9.09 100.00 100.00 100.00 100.00 100.00 100.00 18.18 100.00 100.00 NA 20.00 100.00 100.00 100.00 100.00 NA NA 40.00 NA 100.00 NA 100.00 NA NA NA 100.00 57.89 NA 29.41 NA NA NA 46.67 NA NA NA K intron_retention CG12050,I_chr2L_21095413_21095474,RI_chr2L_21095413_21095659 chr2L - chr2L_21095413_21099036 chr2L_21095412_21095413;chr2L_21099036_21099037 chr2L_21095313_21095412;chr2L_21099037_21099407 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 3.17 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Fer1HCH,I_chr3R_26212319_26213496,I_chr3R_26213132_26213185 chr3R - chr3R_26213273_26213496;chr3R_26213325_26213496 chr3R_26213365_26213496 chr3R_26213497_26213534;chr3R_26213186_26213272 4.23 3.66 2.58 5.34 3.32 3.93 8.17 4.63 4.22 4.59 3.22 4.47 4.71 4.53 3.35 2.77 5.03 3.41 4.36 2.59 2.90 4.40 5.10 6.75 7.63 6.49 12.26 6.85 7.95 4.23 3.90 3.94 8.38 3.65 7.25 5.92 3.81 2.68 5.13 4.92 12.84 3.64 4.36 5.78 4.17 6.86 3.83 6.84 3.43 3.67 5.67 4.11 3.52 3.72 3.33 2.61 2.31 3.69 N alternative_acceptor stc chr2L + chr2L_15114214_15114299;chr2L_15114214_15114311 chr2L_15114214_15114448 chr2L_15114049_15114213;chr2L_15114449_15115753 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD CG17760 chr2R + chr2R_8513482_8514257;chr2R_8513642_8514257 chr2R_8513731_8514257 chr2R_8514258_8514421;chr2R_8513465_8513481 0.00 NA NA 0.00 NA NA 29.09 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_donor Btk29A,I_chr2L_8262681_8277370,I_chr2L_8298341_8298782,I_chr2L_8298341_8300884 chr2L - chr2L_8298341_8300817;chr2L_8298341_8300505 chr2L_8298341_8300714 chr2L_8298241_8298340;chr2L_8300818_8301040 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Hydr1 chr2R + chr2R_5020273_5021103;chr2R_5020273_5020551 chr2R_5020273_5020369;chr2R_5020492_5020551,chr2R_5020492_5021103 chr2R_5020370_5020491 chr2R_5020204_5020272;chr2R_5021104_5021275 11.11 17.39 5.26 8.00 5.56 5.56 18.52 4.35 7.84 NA 14.29 20.00 5.88 7.69 10.00 11.11 8.33 NA 5.00 6.67 13.33 12.50 12.00 11.11 NA 6.67 16.67 NA 21.43 6.67 10.53 NA 16.67 9.68 14.29 16.67 10.00 18.18 10.53 20.83 NA 11.76 14.29 11.11 NA 12.50 NA NA 10.71 NA 15.79 14.29 30.00 14.29 8.70 7.14 16.67 NA K intron_retention nompB chr2L - chr2L_21578530_21578730 chr2L_21578529_21578530;chr2L_21578730_21578731 chr2L_21578522_21578529;chr2L_21578731_21579376 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA Pk17E,I_chrX_18683130_18684538,I_chrX_18685493_18699326 chrX + chrX_18683123_18684544 chrX_18683123_18684538 chrX_18683030_18683122;chrX_18684545_18684638 87.43 92.59 70.83 86.79 86.67 76.00 90.00 80.00 89.66 87.88 82.61 90.74 84.38 96.00 94.74 91.43 89.29 91.67 91.30 86.46 78.26 81.54 89.61 83.05 87.18 86.96 85.45 90.91 89.36 89.58 88.57 80.00 81.25 87.50 79.55 85.37 89.25 98.15 87.84 87.36 NA 83.56 100.00 91.30 83.78 73.47 81.25 88.57 84.38 92.31 91.84 90.32 75.00 85.71 96.67 78.38 92.31 84.44 K intron_retention CG9992 chrX - chrX_16277545_16278620 chrX_16277544_16277545;chrX_16278620_16278621 chrX_16277357_16277544;chrX_16278621_16278914 15.79 35.29 11.76 10.53 NA NA 14.29 15.62 20.45 NA NA 11.54 22.22 NA 20.00 16.67 17.65 23.08 16.67 10.26 17.65 25.00 15.62 20.00 NA 13.33 13.79 15.00 NA NA 16.67 NA NA 8.82 NA NA 12.50 NA 8.70 20.00 NA 9.09 12.50 16.13 NA NA 0.00 NA 15.15 21.05 20.00 8.70 NA NA 15.79 17.65 20.00 NA K intron_retention CG30339,I_chr2R_5496948_5497550,F_chr2R_5549824_5554869 chr2R - chr2R_5489246_5489631 chr2R_5489245_5489246;chr2R_5489631_5489632 chr2R_5488790_5489245;chr2R_5489632_5490004 4.85 0.00 5.26 12.50 3.23 0.00 3.73 8.82 4.85 0.00 5.71 8.08 8.33 13.51 5.41 3.64 0.00 0.00 7.69 4.58 0.00 1.37 6.35 6.78 2.78 0.00 11.54 5.26 5.88 1.59 1.66 2.50 5.36 6.90 13.33 3.51 0.00 0.00 7.27 9.86 5.00 4.40 0.00 2.94 0.00 9.09 3.03 5.97 3.30 9.38 10.00 5.00 0.00 3.39 11.54 6.35 6.06 1.92 K intron_retention CG1407,RI_chr2R_5918919_5919093,I_chr2R_5918925_5919213,RI_chr2R_5918952_5919084,RI_chr2R_5918952_5919093 chr2R - chr2R_5918925_5919093 chr2R_5918924_5918925;chr2R_5919093_5919094 chr2R_5918852_5918924;chr2R_5919094_5919184 44.44 36.67 35.00 27.71 44.44 50.00 43.59 40.58 44.62 47.06 52.00 51.72 61.11 37.04 42.86 42.55 58.62 28.95 44.44 36.51 40.74 57.69 45.45 32.35 50.00 55.56 48.84 75.00 64.29 50.00 39.02 43.75 57.14 40.74 58.82 83.33 50.00 32.14 33.33 52.17 58.82 46.38 45.45 43.59 62.50 27.27 40.00 63.64 38.33 34.38 38.24 46.15 41.18 44.00 41.94 34.62 44.44 63.16 K intron_retention l(1)G0232 chrX - chrX_9523366_9523428 chrX_9523365_9523366;chrX_9523428_9523429 chrX_9523086_9523365;chrX_9523429_9523636 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 4.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention scaf6,EI_chr3L_17037760_17037808 chr3L - chr3L_17030131_17030183 chr3L_17030130_17030131;chr3L_17030183_17030184 chr3L_17029959_17030130;chr3L_17030184_17030355 1.83 4.08 0.00 0.00 0.00 0.00 8.06 2.60 4.29 5.00 7.41 4.44 0.00 2.00 0.00 0.00 0.00 1.89 0.00 1.03 0.00 0.00 2.22 2.94 3.28 5.66 7.27 3.85 6.25 0.00 0.54 2.15 0.00 1.47 2.63 6.49 5.26 0.00 1.72 2.44 7.29 0.00 0.00 0.00 2.27 1.80 1.83 1.82 2.22 5.26 0.99 4.44 2.15 0.00 0.00 2.47 1.19 1.18 K intron_retention Tif-IA,RI_chr2L_22250854_22257652 chr2L + chr2L_22253686_22253745 chr2L_22253685_22253686;chr2L_22253745_22253746 chr2L_22253425_22253685;chr2L_22253746_22253921 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.02 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_150069_150307;chr4_150069_150180;chr4_150069_150378;chr4_150069_150353;chr4_150069_150205 chr4_150069_150295 chr4_149969_150068;chr4_150379_150379 48.53 NA 66.67 50.00 75.00 33.33 40.00 47.06 43.75 NA 66.67 50.00 60.00 40.00 60.00 54.55 42.86 50.00 50.00 44.44 NA NA NA NA NA 33.33 NA NA NA NA 42.86 NA NA 46.67 NA NA NA NA NA NA NA 33.33 66.67 NA NA NA NA NA 40.00 NA NA NA NA NA 66.67 NA NA NA K alternative_acceptor mub,RI_chr3L_21901021_21901163,I_chr3L_21908756_21909179 chr3L + chr3L_21914088_21914153;chr3L_21914088_21914156;chr3L_21914088_21914141 chr3L_21914088_21914192 chr3L_21914067_21914087;chr3L_21914193_21914427 3.85 0.00 0.00 5.00 0.00 0.00 7.69 5.56 2.00 0.00 0.00 2.86 5.88 6.25 0.00 5.56 9.09 5.88 NA 4.35 4.76 2.44 1.85 5.00 3.12 0.00 3.23 5.26 0.00 3.45 6.67 0.00 16.67 4.17 5.00 0.00 1.52 2.50 2.27 2.17 0.00 6.52 7.69 9.09 0.00 4.17 4.76 8.70 2.86 6.90 5.41 3.85 0.00 4.00 8.33 0.00 3.85 30.77 K intron_retention Cyt-b5,I_chr2R_3421746_3422836,RI_chr2R_3421858_3421921,RI_chr2R_3421858_3422836 chr2R + chr2R_3421236_3422836 chr2R_3421235_3421236;chr2R_3422836_3422837 chr2R_3421029_3421235;chr2R_3422837_3422936 0.80 0.21 0.89 0.95 1.38 0.80 0.76 1.09 0.79 0.00 1.33 1.65 1.61 1.81 0.59 0.51 1.63 0.26 0.00 0.87 0.77 1.26 0.72 0.63 0.95 1.14 1.51 1.93 1.16 0.22 0.49 0.41 0.58 1.07 1.18 0.45 1.05 0.80 0.72 1.27 0.90 1.24 1.14 0.87 0.28 0.23 0.60 0.30 0.54 1.24 0.45 0.68 0.82 0.69 0.82 0.33 0.14 0.53 K alternative_donor CG2818 chr2L + chr2L_3714584_3714646;chr2L_3714492_3714646 chr2L_3714574_3714646 chr2L_3714647_3716104;chr2L_3714467_3714491 15.19 0.00 15.38 12.50 NA 20.00 13.33 33.33 17.24 0.00 9.09 10.53 25.00 15.38 13.33 23.53 22.22 18.18 16.67 16.67 37.50 2.78 7.41 17.65 17.65 11.11 20.00 15.38 8.33 0.00 25.71 NA 17.39 17.65 16.67 0.00 10.00 10.00 13.33 15.00 25.00 17.65 15.38 23.53 0.00 8.33 0.00 35.29 25.00 0.00 11.11 12.50 NA 11.11 0.00 25.00 14.29 5.56 K jcn_only_AD ced-6,I_chr2R_5324717_5324924,I_chr2R_5328640_5328696 chr2R - chr2R_5325238_5328696;chr2R_5325238_5329037 chr2R_5325238_5329011 chr2R_5324931_5325237;chr2R_5329038_5329082 1.77 0.99 2.38 1.36 3.33 1.77 1.22 3.32 1.74 5.26 0.80 3.17 0.72 0.00 4.97 0.69 0.79 2.68 0.76 1.08 0.00 10.53 2.34 4.08 0.00 2.26 1.47 2.38 2.63 2.00 1.49 4.76 5.88 1.00 0.00 0.00 2.19 3.42 0.00 5.11 1.54 2.05 0.94 1.35 2.13 0.99 0.00 3.23 1.93 3.29 2.26 2.04 0.00 0.00 2.34 1.94 0.00 1.41 K jcn_only_AD Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11838972_11839376;chr2R_11838972_11839458 chr2R_11838972_11839411 chr2R_11838888_11838971;chr2R_11839459_11839486 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA 0.00 2.70 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA K alternative_donor Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_150069_150180;chr4_150069_150378;chr4_150069_150353;chr4_150069_150295;chr4_150069_150205 chr4_150069_150307 chr4_149969_150068;chr4_150379_150379 10.00 NA 0.00 10.00 0.00 0.00 5.00 5.88 12.50 NA 0.00 10.00 20.00 20.00 20.00 9.09 14.29 0.00 10.00 11.11 NA NA NA NA NA 16.67 NA NA NA NA 14.29 NA NA 6.67 NA NA NA NA NA NA NA 8.33 33.33 NA NA NA NA NA 13.33 NA NA NA NA NA 16.67 NA NA NA K intron_retention CG1494 chrX + chrX_21159528_21159749 chrX_21159527_21159528;chrX_21159749_21159750 chrX_21159148_21159527;chrX_21159750_21160202 0.00 0.00 0.00 19.05 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K intron_retention CG12090,I_chr3L_1525393_1526659,Ir62a chr3L - chr3L_1528077_1531390 chr3L_1528076_1528077;chr3L_1531390_1531391 chr3L_1528061_1528076;chr3L_1531391_1531522 73.87 77.78 60.00 27.78 60.00 NA 88.89 60.00 86.36 NA NA 80.00 40.00 81.82 NA 91.67 NA NA 88.89 58.82 NA 83.33 71.43 80.00 91.67 93.33 54.55 NA 72.73 69.23 66.67 NA NA 69.23 NA 100.00 69.23 75.00 NA 84.21 60.00 80.00 NA 62.50 NA NA NA NA 87.50 NA NA NA NA NA 70.59 NA NA NA N jcn_only_AA CG42394,noncoding_15936,E_chr3R_6675742_6676058 chr3R + chr3R_6677211_6677270;chr3R_6677211_6677262 chr3R_6677211_6677344 chr3R_6677007_6677210;chr3R_6677345_6677430 0.00 0.00 0.00 7.25 0.00 0.00 0.00 5.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention hopscotch chrX - chrX_11256038_11256103 chrX_11256037_11256038;chrX_11256103_11256104 chrX_11254955_11256037;chrX_11256104_11256268 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 K jcn_only_AD l(2)gl,I_chr2L_17213_21135,RI_chr2L_20021_20830,I_chr2L_20974_21065 chr2L - chr2L_20021_21065;chr2L_20021_20830 chr2L_20021_21135 chr2L_19921_20020;chr2L_21136_21145 21.82 NA NA 28.57 NA NA 28.57 13.79 21.43 NA NA 5.71 NA NA NA 34.48 NA NA 26.09 NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA 24.24 NA NA NA NA NA NA NA 22.22 14.29 4.00 NA NA NA 20.00 22.22 NA NA NA NA NA NA NA NA NA K intron_retention CG3731,E_chr3R_10716521_10717949,E_chr3R_10716592_10717074,E_chr3R_10717341_10717506 chr3R + chr3R_10716625_10716683 chr3R_10716624_10716625;chr3R_10716683_10716684 chr3R_10716418_10716624;chr3R_10716684_10717012 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 1.70 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 K jcn_only_AD Aldh-III,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3357578_3357898 chr2R_3357578_3357636 chr2R_3357478_3357577;chr2R_3357899_3358120 3.23 1.88 5.93 1.45 3.03 0.91 3.23 3.11 3.02 5.26 3.66 1.32 4.90 4.35 4.26 0.83 3.57 13.33 4.50 3.91 2.02 50.00 4.44 3.62 5.19 5.88 3.01 2.63 3.85 3.64 10.62 5.80 4.55 2.91 2.80 3.19 3.87 0.86 0.62 4.69 0.00 3.35 1.01 2.56 4.35 6.08 0.69 5.98 5.08 2.11 1.99 4.90 1.12 0.82 2.03 2.84 2.34 1.14 K cassette CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525393_1527189 chr3L_1525393_1525641;chr3L_1525701_1527189 chr3L_1525642_1525700 chr3L_1525293_1525392;chr3L_1527190_1527240 75.00 61.54 92.31 91.30 70.00 66.67 76.47 75.00 79.17 NA NA 92.86 92.86 63.64 64.71 93.33 75.00 63.64 NA 79.17 87.50 69.23 86.67 57.89 60.00 25.00 93.75 NA 46.67 66.67 75.00 87.50 77.78 75.00 75.00 90.00 53.85 76.92 73.33 54.17 57.14 57.58 72.73 92.31 66.67 60.00 69.23 91.67 70.37 70.59 76.47 85.71 81.82 54.55 58.33 66.67 78.95 86.67 N intron_retention CG31216 chr3R + chr3R_15522974_15523033 chr3R_15522973_15522974;chr3R_15523033_15523034 chr3R_15522916_15522973;chr3R_15523034_15523168 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Droj2,RI_chr3R_9207981_9208471,RI_chr3R_9208529_9209185 chr3R + chr3R_9207867_9207925 chr3R_9207866_9207867;chr3R_9207925_9207926 chr3R_9207840_9207866;chr3R_9207926_9207980 98.88 98.88 98.18 98.27 98.51 97.78 99.16 98.25 98.61 100.00 99.05 99.51 98.54 99.12 98.48 98.12 98.58 99.10 97.30 98.78 100.00 97.84 100.00 98.35 98.86 99.04 100.00 99.09 99.40 100.00 100.00 98.08 100.00 97.07 97.50 100.00 97.35 98.61 99.10 99.69 100.00 97.48 96.64 99.37 99.51 99.44 99.04 99.57 98.08 97.35 100.00 96.40 98.78 100.00 97.50 98.89 98.34 99.68 K alternative_acceptor I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_927233_927699,RI_chr4_927771_929704,CG32021,RI_chr4_928180_928245,RI_chr4_928193_928245,I_chr4_928482_929704,noncoding_20815,I_chr4_929811_932812 chr4 - chr4_928482_929704;chr4_928551_929704 chr4_927771_929704 chr4_929705_929804;chr4_927741_927770 1.75 1.85 2.44 1.96 9.09 0.00 0.00 9.62 6.06 2.99 0.00 3.45 3.45 2.78 2.00 6.38 6.90 2.78 0.00 2.75 3.03 1.71 0.89 1.10 0.00 2.94 1.61 2.59 0.00 0.00 1.19 NA 2.44 3.03 3.39 0.00 0.00 2.70 0.81 0.72 0.00 3.53 0.00 0.69 0.00 1.94 0.00 0.00 4.11 3.64 1.03 1.79 0.00 7.02 0.00 1.52 1.33 1.54 K intron_retention RI_chrX_1796525_1796585,mip130,CG3573,I_chrX_1820956_1821011,CG11596 chrX + chrX_1820952_1821011 chrX_1820951_1820952;chrX_1821011_1821012 chrX_1820856_1820951;chrX_1821012_1821111 0.50 0.00 1.83 3.67 0.00 0.00 2.63 1.67 0.50 0.00 0.00 2.52 0.00 1.64 1.79 0.00 0.00 1.96 0.00 1.27 0.00 0.85 0.00 1.32 0.00 0.00 2.13 4.88 3.65 0.46 0.00 0.00 0.83 0.00 1.23 0.00 1.97 0.00 2.09 0.40 0.90 1.40 0.00 0.00 0.26 0.60 0.00 0.50 1.61 0.82 0.00 0.00 1.63 0.00 1.98 1.80 0.00 0.56 K alternative_donor CG32000,RI_chr4_153025_153811,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_153858_154213 chr4_153862_154213 chr4_154214_154339;chr4_153815_153857 29.03 NA 30.77 50.00 NA NA 28.00 29.17 29.03 NA NA 27.59 NA 41.67 NA 31.25 NA NA 30.77 29.17 NA NA 17.65 NA NA NA 16.67 NA NA NA NA NA NA 30.00 23.53 15.38 NA NA NA 25.00 NA 25.93 NA 25.00 NA NA NA 25.00 48.15 NA 41.67 NA NA NA NA NA NA NA K alternative_donor CG5021 chr3L + chr3L_8960084_8960227 chr3L_8960093_8960227 chr3L_8960228_8960310;chr3L_8959939_8960083 22.62 24.24 21.82 30.22 26.19 21.43 18.69 26.42 24.14 14.29 25.71 26.38 26.39 21.69 23.20 22.76 18.00 29.58 19.35 19.53 25.00 10.00 18.10 23.08 21.92 24.55 22.54 31.52 26.76 25.00 20.63 23.08 17.02 23.39 23.85 23.91 20.00 20.69 18.63 22.14 24.39 22.28 25.00 14.29 14.29 21.05 17.65 21.43 24.73 22.64 23.30 19.05 26.79 22.55 19.83 21.52 22.62 23.08 K jcn_only_AD vlc chr2R + chr2R_1589894_1590371;chr2R_1589799_1590371;chr2R_1589805_1590371;chr2R_1590318_1590371;chr2R_1589807_1590371;chr2R_1590294_1590371;chr2R_1589722_1590371;chr2R_1589693_1590371 chr2R_1589953_1590371 chr2R_1590372_1590451;chr2R_1589612_1589692 2.46 0.00 1.45 3.81 3.64 6.12 5.15 0.79 3.39 0.00 2.22 2.46 0.00 1.35 1.39 2.48 4.26 28.57 1.56 2.19 1.89 0.00 3.12 3.03 0.00 3.33 0.00 6.45 6.67 1.89 2.38 0.00 6.78 2.17 0.00 3.85 3.33 3.51 2.86 7.32 3.33 2.27 1.37 5.63 3.23 1.85 2.27 3.70 1.43 0.00 2.94 7.27 3.51 0.00 2.27 2.50 0.00 4.35 K alternative_donor M(2)21AB,I_chr2L_107839_110405,I_chr2L_107957_108587,I_chr2L_110878_111037,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_108347_108587;chr2L_108227_108587;chr2L_107839_108587 chr2L_108102_108587 chr2L_108588_108687;chr2L_107833_107838 3.45 3.70 3.57 2.27 3.57 0.00 2.70 6.25 1.45 3.33 3.85 5.88 0.00 4.35 3.45 5.71 0.00 3.45 3.45 3.39 3.85 2.56 2.50 3.77 5.13 0.00 2.27 3.51 2.86 3.23 2.70 5.00 10.71 2.17 3.57 3.45 2.82 0.00 2.56 4.84 10.00 3.51 4.35 2.60 4.35 7.69 4.00 8.57 2.94 2.04 1.92 2.08 4.55 4.76 5.71 3.03 4.17 3.70 K alternative_donor SPoCk,I_chr3L_22776339_22776519,I_chr3L_22777865_22778359 chr3L + chr3L_22771925_22776519 chr3L_22776339_22776519 chr3L_22776520_22776619;chr3L_22771825_22771924 0.00 0.00 0.00 1.22 0.00 0.00 0.00 1.19 0.70 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 1.89 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG32165 chr3L + chr3L_16590135_16590193 chr3L_16590138_16590193 chr3L_16590194_16590253;chr3L_16589919_16590134 14.71 NA NA NA NA NA NA NA 11.11 NA NA 23.08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.14 NA NA NA 13.64 NA 23.08 NA NA NA NA NA NA NA NA 15.79 NA NA NA NA NA NA NA NA NA K intron_retention DnaJ-1 chr3L - chr3L_5744701_5744945 chr3L_5744700_5744701;chr3L_5744945_5744946 chr3L_5743126_5744700;chr3L_5744946_5745193 0.83 3.23 4.55 4.21 2.38 1.92 3.75 0.83 4.38 2.86 0.00 1.14 0.00 0.00 4.76 0.00 0.00 0.00 2.78 2.61 3.77 5.36 0.00 1.82 0.00 0.00 6.56 11.76 16.67 0.00 0.00 0.00 0.00 1.98 0.00 0.00 2.56 0.00 0.00 1.25 0.00 3.51 3.39 0.00 0.00 0.00 2.27 2.22 2.80 4.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Syx4,I_chrX_2635555_2635621,I_chrX_2636831_2636971 chrX - chrX_2633579_2633652;chrX_2633579_2633742 chrX_2633579_2635455 chrX_2633330_2633578;chrX_2635456_2635529 90.48 90.74 90.48 91.53 92.68 89.58 87.10 88.78 86.92 70.00 92.73 89.89 81.48 86.00 90.48 87.50 89.13 90.20 90.77 91.59 88.89 94.74 91.11 88.37 92.00 90.24 89.29 89.47 92.31 94.29 90.91 92.31 94.83 91.34 89.13 90.00 91.89 88.24 92.16 91.43 95.00 90.18 90.20 93.10 94.87 90.62 86.21 92.98 85.44 91.94 86.96 89.29 83.33 86.67 91.14 89.58 91.11 90.91 K intron_retention CG3714,I_chr2L_4190825_4191774,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,I_chr2L_4196780_4197306,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4197192_4197251 chr2L_4197191_4197192;chr2L_4197251_4197252 chr2L_4197147_4197191;chr2L_4197252_4197298 100.00 100.00 95.24 100.00 88.89 100.00 97.98 100.00 100.00 88.89 NA 97.56 100.00 100.00 100.00 100.00 92.31 100.00 100.00 96.55 100.00 96.55 100.00 96.30 100.00 100.00 97.96 92.86 100.00 96.55 100.00 NA 94.74 97.62 97.22 96.67 100.00 100.00 100.00 96.97 96.55 96.67 100.00 96.88 100.00 100.00 100.00 100.00 96.43 96.88 100.00 100.00 NA 100.00 95.45 100.00 NA 100.00 K alternative_acceptor Fmr1,I_chr3R_5930712_5930781,I_chr3R_5934794_5935245,I_chr3R_5934801_5935537 chr3R - chr3R_5930712_5930781 chr3R_5930733_5930781 chr3R_5930782_5930881;chr3R_5930612_5930711 100.00 100.00 100.00 98.59 100.00 97.37 98.04 100.00 98.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 98.85 100.00 100.00 100.00 100.00 96.97 100.00 100.00 97.06 96.15 100.00 100.00 100.00 97.18 100.00 96.88 100.00 98.28 94.12 98.57 98.78 97.30 100.00 100.00 97.56 97.30 100.00 97.73 100.00 100.00 96.55 98.08 95.45 100.00 100.00 100.00 NA 96.43 100.00 K alternative_acceptor CG5789,I_chr3R_20364666_20364713,I_chr3R_20367337_20369421 chr3R - chr3R_20364651_20364713 chr3R_20364666_20364713 chr3R_20364714_20364813;chr3R_20364566_20364650 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 3.70 0.00 0.00 1.25 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N cassette lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6394546_6419543,RI_chr2R_6403557_6403850,I_chr2R_6403557_6406705,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6398510_6419543 chr2R_6398510_6403339;chr2R_6403557_6419543 chr2R_6403340_6403556 chr2R_6398477_6398509;chr2R_6419544_6419624 99.01 100.00 98.96 99.41 98.53 100.00 100.00 99.43 99.07 97.83 98.53 99.36 100.00 100.00 99.02 99.11 100.00 98.91 98.91 100.00 98.55 98.94 100.00 100.00 100.00 100.00 99.01 97.67 97.03 98.86 98.15 97.50 97.96 100.00 98.92 98.21 99.30 97.75 99.20 98.90 96.55 99.46 100.00 97.89 100.00 98.51 98.31 97.87 99.44 97.87 97.64 100.00 100.00 97.73 100.00 100.00 97.83 98.73 K intron_retention TSG101 chr3L + chr3L_16837239_16837306 chr3L_16837238_16837239;chr3L_16837306_16837307 chr3L_16836892_16837238;chr3L_16837307_16837686 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA akirin,I_chr3L_7363173_7364806,I_chr3L_7363177_7364806,I_chr3L_7363177_7364831,I_chr3L_7363211_7364831,I_chr3L_7363731_7364806,I_chr3L_7364126_7364806,RI_chr3L_7364737_7364806 chr3L + chr3L_7363169_7364831 chr3L_7363169_7364806 chr3L_7363111_7363168;chr3L_7364832_7364906 78.18 80.46 87.50 95.00 81.03 83.33 90.23 88.83 81.31 75.93 90.48 84.56 81.90 72.15 84.21 76.72 83.95 78.18 76.81 87.67 75.51 67.69 72.14 75.31 80.00 89.19 86.55 81.48 90.38 67.29 71.25 71.43 43.81 86.00 79.66 83.33 76.40 77.94 71.19 72.95 78.12 79.71 84.75 86.27 78.12 72.06 75.86 68.00 75.90 66.67 79.59 81.33 63.16 74.07 79.41 74.24 71.64 68.00 K alternative_last_exon MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17399683_17401021;chr2R_17399683_17399897 chr2R_17399683_17403481,chr2R_17399683_17403392,chr2R_17399683_17401733,chr2R_17399683_17401713 chr2R_17401022_17401310;chr2R_17399898_17400225 None chr2R_17399598_17399682 70.21 78.18 74.51 53.75 83.33 83.67 32.88 44.44 66.67 75.00 46.34 43.42 58.62 72.50 72.00 56.82 54.84 58.82 61.11 65.69 65.71 74.31 81.18 74.65 72.55 64.58 70.69 66.27 56.90 70.97 72.88 66.67 62.35 64.47 67.35 71.19 84.52 81.13 82.19 72.38 52.78 72.15 62.86 65.08 67.07 65.17 77.92 57.65 71.79 63.38 83.70 73.17 81.97 75.44 70.21 79.49 76.79 64.21 K jcn_only_AD D1,RI_chr3R_5065631_5065691,I_chr3R_5065631_5065695,I_chr3R_5065631_5065697 chr3R - chr3R_5065631_5065697;chr3R_5065631_5065691;chr3R_5065631_5065695 chr3R_5065631_5065767 chr3R_5065531_5065630;chr3R_5065768_5065790 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA 33.33 NA NA NA NA NA NA NA NA NA 28.12 K intron_retention CG30392,CG30390 chr2R - chr2R_17179365_17179431 chr2R_17179364_17179365;chr2R_17179431_17179432 chr2R_17179147_17179364;chr2R_17179432_17179683 2.70 NA 0.00 13.95 NA 0.00 6.52 5.71 0.00 NA 0.00 7.69 0.00 0.00 0.00 6.67 0.00 NA 0.00 2.70 0.00 NA 0.00 0.00 NA 4.55 14.29 NA NA NA 0.00 12.50 4.76 0.00 0.00 NA NA NA 0.00 8.70 5.26 6.67 5.00 NA 0.00 0.00 NA 6.67 12.50 11.11 0.00 NA NA 14.29 6.90 0.00 7.69 5.41 K intron_retention CG40263,F_chr2RHet_1265687_1293040,F_chr2RHet_1298459_1298703,F_chr2RHet_1298459_1311408,F_chr2RHet_1298885_1299622,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1286572_1292103 chr2RHet_1286571_1286572;chr2RHet_1292103_1292104 chr2RHet_1286565_1286571;chr2RHet_1292104_1292186 20.48 NA NA NA NA NA NA 40.00 26.67 NA NA NA NA NA NA NA NA NA NA 8.82 NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor vlc chr2R + chr2R_1589953_1590371;chr2R_1589894_1590371;chr2R_1589799_1590371;chr2R_1589805_1590371;chr2R_1589807_1590371;chr2R_1590294_1590371;chr2R_1589722_1590371;chr2R_1589693_1590371 chr2R_1590318_1590371 chr2R_1590372_1590451;chr2R_1589612_1589692 2.56 2.94 2.56 3.03 0.00 0.00 3.64 1.52 2.53 0.00 3.85 2.67 4.88 4.65 0.00 2.86 3.23 7.50 4.17 2.94 7.41 0.00 2.27 2.86 0.00 2.63 2.63 7.69 0.00 0.00 2.17 8.33 4.35 2.53 9.09 0.00 0.00 0.00 0.00 5.26 0.00 2.70 2.63 0.00 0.00 0.00 4.55 10.00 2.44 0.00 2.08 0.00 0.00 0.00 3.70 4.35 0.00 10.53 K intron_retention CG7112 chr3L + chr3L_8343189_8343247 chr3L_8343188_8343189;chr3L_8343247_8343248 chr3L_8343000_8343188;chr3L_8343248_8343967 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG1667,RI_chr2R_5731409_5731653,I_chr2R_5732410_5732504 chr2R + chr2R_5732410_5732504 chr2R_5732410_5732494 chr2R_5732341_5732409;chr2R_5732505_5732561 100.00 95.45 100.00 97.22 100.00 96.15 100.00 100.00 98.51 100.00 100.00 97.78 100.00 100.00 97.14 100.00 96.00 100.00 100.00 98.33 100.00 100.00 95.83 95.83 100.00 96.30 100.00 100.00 96.15 100.00 100.00 100.00 100.00 97.87 100.00 100.00 96.43 100.00 100.00 97.83 97.14 100.00 96.43 96.77 97.06 97.30 100.00 96.43 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 97.14 95.56 K jcn_only_AD dorsal,RI_chr2L_17438018_17439189,I_chr2L_17442335_17442399,FI_chr2L_17449369_17450215,RI_chr2L_17450002_17450219 chr2L - chr2L_17442335_17442403 chr2L_17442335_17442399 chr2L_17442235_17442334;chr2L_17442404_17442499 0.00 0.86 0.00 0.74 1.23 0.00 0.00 0.67 0.46 0.00 0.00 0.00 0.00 1.30 1.89 0.86 0.00 0.00 0.00 0.00 1.59 0.58 0.00 0.74 0.00 1.92 1.77 0.00 0.00 1.22 0.00 0.00 1.74 0.62 0.00 1.06 0.00 2.10 0.69 1.06 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.94 0.00 0.00 2.90 1.27 0.00 0.00 0.00 1.96 0.00 0.66 K cassette CG2247 chrX - chrX_11503341_11504234 chrX_11503341_11503434;chrX_11503747_11504234 chrX_11503435_11503746 chrX_11502738_11503340;chrX_11504235_11504388 100.00 96.15 96.15 96.77 95.24 100.00 91.67 97.30 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 95.45 100.00 100.00 94.44 96.30 97.22 100.00 100.00 93.75 92.31 92.86 100.00 100.00 100.00 100.00 100.00 100.00 94.12 95.24 100.00 100.00 96.15 100.00 100.00 97.44 95.45 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 95.83 100.00 100.00 92.86 K intron_retention E(Pc) chr2R + chr2R_7344426_7344492 chr2R_7344425_7344426;chr2R_7344492_7344493 chr2R_7344310_7344425;chr2R_7344493_7347824 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.23 0.00 0.00 0.00 0.00 6.35 12.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 K jcn_only_AA Ank,RI_chr4_144049_144406,I_chr4_144066_144410,I_chr4_150069_150423 chr4 - chr4_144049_144410 chr4_144066_144410 chr4_144411_144506;chr4_143966_144048 0.32 1.05 0.50 0.00 0.00 1.35 0.36 0.57 1.04 0.00 0.74 0.94 0.00 0.59 0.67 0.87 0.62 0.00 0.00 0.26 0.00 0.00 0.00 1.54 3.57 0.62 0.00 0.00 0.00 0.00 1.80 0.00 0.00 0.82 0.00 2.47 0.00 1.69 1.20 0.75 0.00 0.34 1.22 0.91 NA 0.00 0.00 0.00 0.29 NA 1.87 0.00 0.00 NA 0.76 6.90 0.00 0.00 K intron_retention CG5059,I_chr3L_20509233_20511440,I_chr3L_20509985_20510360 chr3L - chr3L_20509233_20512067 chr3L_20509232_20509233;chr3L_20512067_20512068 chr3L_20509133_20509232;chr3L_20512068_20512532 4.55 4.76 3.77 6.56 5.88 4.65 4.76 4.21 6.31 0.00 0.00 8.57 5.71 7.50 6.90 5.17 8.70 2.56 5.77 2.08 0.00 8.00 3.92 3.57 0.00 5.26 5.26 9.52 0.00 0.00 4.55 0.00 4.35 5.56 0.00 8.89 0.00 3.57 4.00 7.55 0.00 2.27 6.82 4.26 0.00 4.88 6.49 5.00 4.55 9.09 7.35 0.00 6.25 2.70 0.00 0.00 3.23 0.00 K intron_retention DAAM,I_chrX_1210195_1215682,I_chrX_1210195_1235357 chrX - chrX_1210195_1216232 chrX_1210194_1210195;chrX_1216232_1216233 chrX_1210108_1210194;chrX_1216233_1216370 0.00 NA 7.14 NA NA NA 0.00 0.00 4.55 NA NA 8.70 NA NA NA 6.25 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 4.76 NA NA NA NA NA NA NA 6.67 NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA K intron_retention RI_chr2L_8218680_8218853,Pvr,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8224532_8224592 chr2L_8224531_8224532;chr2L_8224592_8224593 chr2L_8224052_8224531;chr2L_8224593_8225042 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG13902,I_chr3L_840962_841041 chr3L - chr3L_840970_841041;chr3L_840991_841041 chr3L_840962_841041 chr3L_841042_841141;chr3L_840862_840961 6.25 0.00 22.22 0.00 0.00 14.29 8.33 3.70 4.17 0.00 0.00 0.00 8.33 0.00 6.67 8.33 0.00 15.38 0.00 6.25 7.69 18.18 7.14 0.00 12.50 7.69 0.00 0.00 13.33 6.25 11.76 12.50 5.26 5.88 0.00 7.69 20.00 18.18 6.25 5.26 0.00 3.33 9.09 7.69 15.38 5.26 10.00 5.26 8.33 0.00 13.33 9.09 9.09 23.08 5.88 0.00 8.33 5.26 K intron_retention Hrb27C,I_chr2L_6924401_6924743 chr2L + chr2L_6922827_6923783 chr2L_6922826_6922827;chr2L_6923783_6923784 chr2L_6922735_6922826;chr2L_6923784_6924400 0.74 0.00 1.47 1.21 0.00 1.73 0.69 0.43 1.07 NA 1.28 1.61 1.08 1.71 2.18 1.51 0.00 0.00 0.72 0.49 0.00 2.20 0.38 0.00 0.00 1.08 1.15 1.85 0.00 1.20 0.00 0.00 0.90 1.07 1.56 1.49 0.00 0.70 2.15 1.99 0.00 1.12 1.72 0.00 0.00 0.00 0.00 1.65 0.87 0.00 0.94 0.00 0.00 0.00 0.76 0.00 0.00 1.96 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2392054 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2389073;chrX_2389272_2389644;chrX_2389762_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054 chrX_2387584_2387709;chrX_2388437_2388670;chrX_2389074_2389271;chrX_2389645_2389761;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2392055_2392148 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA 50.00 NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention CG4673,I_chr3R_21449128_21449210,I_chr3R_21452371_21452464,I_chr3R_21452407_21452453 chr3R - chr3R_21437660_21447601 chr3R_21437659_21437660;chr3R_21447601_21447602 chr3R_21437303_21437659;chr3R_21447602_21447762 0.00 2.50 0.00 0.00 0.00 2.63 5.71 2.17 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 1.82 4.55 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 5.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD Syb chr2R - chr2R_6137333_6137873;chr2R_6137333_6138021 chr2R_6137333_6138451 chr2R_6137005_6137332;chr2R_6138452_6138649 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA 59.09 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA K jcn_only_AA fax chr3L - chr3L_16398937_16400120 chr3L_16398946_16400120 chr3L_16400121_16400459;chr3L_16398602_16398936 86.69 89.39 82.72 88.50 79.78 83.72 48.28 85.00 86.34 82.50 86.57 91.23 84.44 90.24 83.18 83.15 80.26 81.94 88.10 90.41 79.21 87.48 82.57 87.96 92.82 84.13 86.77 93.45 85.71 87.86 86.87 83.82 89.40 84.17 88.64 94.50 86.69 87.45 87.46 85.77 90.18 86.10 84.52 88.64 86.87 89.19 83.83 93.42 83.21 86.54 90.83 89.71 81.16 91.48 90.70 88.96 82.01 85.71 K intron_retention CG31140,F_chr3R_19799277_19802225 chr3R + chr3R_19805345_19807447 chr3R_19805344_19805345;chr3R_19807447_19807448 chr3R_19805237_19805344;chr3R_19807448_19807688 18.75 NA NA NA NA NA NA NA NA NA NA 18.75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention cul-4 chr2R - chr2R_3990050_3990112 chr2R_3990049_3990050;chr2R_3990112_3990113 chr2R_3989765_3990049;chr2R_3990113_3990411 72.73 68.18 86.36 84.44 62.50 75.00 69.09 70.21 74.63 NA 43.75 86.11 48.28 78.79 81.82 77.50 73.08 71.43 82.61 65.71 46.15 71.43 78.26 72.41 66.67 93.33 66.67 NA 81.82 60.00 69.23 81.25 55.56 78.57 60.00 92.86 68.75 66.67 75.00 70.00 92.31 75.00 73.08 81.82 75.00 83.33 66.67 NA 71.43 62.50 78.95 61.54 78.95 78.95 70.00 72.73 72.73 71.88 K cassette PhKgamma,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11592631_11594653;chrX_11592631_11597322 chrX_11592631_11593355;chrX_11593440_11597322,chrX_11593440_11594653 chrX_11593356_11593439 chrX_11592533_11592630;chrX_11597323_11597422 3.85 4.76 NA 0.00 6.67 NA 0.00 4.76 3.85 0.00 NA 9.52 5.56 0.00 NA NA 0.00 NA NA 0.00 NA 3.45 3.45 4.35 7.14 NA 0.00 6.25 0.00 4.76 NA NA NA 5.56 4.35 NA 0.00 6.25 4.35 3.33 NA 4.55 NA 0.00 NA 3.85 0.00 4.76 0.00 4.00 3.85 5.56 NA 5.88 NA 5.26 0.00 0.00 K multi_cassette unc-13,I_chr4_897821_902468,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_897821_903586 chr4_897821_899476;chr4_899619_902468;chr4_902576_903242;chr4_903350_903586 chr4_899477_899618;chr4_902469_902575;chr4_903243_903349 chr4_897721_897820;chr4_903587_903686 16.03 NA NA 2.27 18.18 20.00 5.26 7.69 21.74 NA NA 6.90 NA 25.00 20.00 21.43 NA 33.33 16.67 16.67 NA 14.29 20.00 8.33 4.76 7.69 8.82 7.69 20.00 8.33 15.38 NA 23.08 13.64 10.00 3.85 21.43 NA 33.33 23.08 14.29 10.00 NA 16.67 33.33 18.18 NA 10.00 12.00 NA 12.50 33.33 NA NA 18.18 NA 12.50 33.33 K intron_retention CG9932,I_chr2L_13031395_13035824 chr2L - chr2L_13028552_13028867 chr2L_13028551_13028552;chr2L_13028867_13028868 chr2L_13027809_13028551;chr2L_13028868_13029642 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 5.88 NA 0.00 4.55 5.26 0.00 0.00 NA 0.00 0.00 0.00 15.79 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 6.67 NA 0.00 K intron_retention CG5316 chr3R + chr3R_15230472_15230563 chr3R_15230471_15230472;chr3R_15230563_15230564 chr3R_15230023_15230471;chr3R_15230564_15231618 0.00 0.00 0.00 5.71 NA 0.00 0.00 0.00 0.00 NA 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 16.22 16.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 2.70 6.67 0.00 NA 0.00 0.00 3.23 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention sax,CG1882 chr2R + chr2R_3700703_3700785 chr2R_3700702_3700703;chr2R_3700785_3700786 chr2R_3700547_3700702;chr2R_3700786_3702250 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 92.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG3446,I_chrX_6244272_6244321 chrX - chrX_6244272_6244325 chrX_6244272_6244321 chrX_6244172_6244271;chrX_6244326_6244397 0.00 1.03 0.00 0.00 0.69 0.77 0.60 1.05 1.24 0.00 0.00 0.54 0.98 0.91 0.00 0.00 0.00 1.92 0.68 0.00 0.00 1.25 0.00 1.03 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 1.75 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.74 0.00 K intron_retention Ucrh,CREFI_chr3LHet_606442_607073 chr3LHet + chr3LHet_606253_606349 chr3LHet_606252_606253;chr3LHet_606349_606350 chr3LHet_606239_606252;chr3LHet_606350_606441 22.66 NA NA 22.58 NA 23.08 22.22 47.83 22.73 NA NA 18.75 NA NA 9.09 30.43 7.69 NA 26.67 35.71 NA NA NA NA NA NA NA NA NA NA 5.88 NA NA 29.63 NA NA NA NA NA NA NA 19.05 NA NA NA NA NA NA 24.00 NA NA NA NA NA 13.33 NA NA NA K intron_retention Ac3,I_chr2L_21643253_21646594 chr2L + chr2L_21644220_21646594 chr2L_21644219_21644220;chr2L_21646594_21646595 chr2L_21643764_21644219;chr2L_21646595_21646694 25.00 NA NA NA NA NA 42.86 23.53 35.29 NA NA NA NA NA 16.67 12.50 NA NA NA 11.76 NA NA NA 25.00 NA NA 36.36 NA NA 31.25 12.90 41.67 14.29 16.67 NA 29.41 25.00 NA NA 33.33 NA 22.22 NA 54.55 NA 25.00 41.67 23.81 17.39 40.00 31.58 NA NA NA NA 35.71 35.71 12.00 K jcn_only_AD RluA-2,I_chr2L_10480906_10481097 chr2L + chr2L_10477593_10481097 chr2L_10480906_10481097 chr2L_10481098_10481197;chr2L_10477493_10477592 3.03 NA NA 0.00 NA NA 0.00 0.00 6.12 NA NA 3.45 NA NA 0.00 8.33 NA NA NA 2.44 NA NA NA 0.00 3.85 NA 3.03 NA NA NA 16.67 NA NA 7.69 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA 12.90 NA NA NA NA NA NA NA 8.33 NA K alternative_acceptor CG32732,I_chrX_6852961_6853021 chrX - chrX_6852961_6853021 chrX_6852969_6853021 chrX_6853022_6853121;chrX_6852861_6852960 100.00 100.00 100.00 100.00 NA 87.50 94.74 100.00 96.15 NA NA 94.12 100.00 100.00 100.00 93.75 NA 91.67 92.31 100.00 87.50 100.00 100.00 94.74 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 NA 95.65 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Dscam,I_chr2R_3212243_3212342,F_chr2R_3219886_3228832,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3209152_3210064 chr2R_3209155_3210064 chr2R_3210065_3210223;chr2R_3209119_3209151 91.78 94.12 92.59 95.08 86.36 80.00 NA 91.89 90.91 NA NA 92.86 NA 85.00 96.15 92.86 100.00 NA 100.00 86.67 NA 95.56 90.48 93.94 NA NA 91.67 95.65 90.24 93.02 97.44 86.21 92.50 94.12 NA 85.00 90.16 96.00 97.30 91.55 NA 91.18 90.00 93.88 91.67 85.37 90.00 92.11 90.24 92.86 88.46 79.17 NA NA 87.18 94.44 87.50 NA K alternative_acceptor fbp,I_chr2L_19762832_19763529 chr2L - chr2L_19762815_19763425 chr2L_19762832_19763425 chr2L_19763426_19763497;chr2L_19762732_19762814 100.00 100.00 NA 100.00 NA NA NA 100.00 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA 93.33 NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 K cassette CG34394,I_chr2L_3365674_3365965 chr2L - chr2L_3361444_3362998 chr2L_3361444_3362442;chr2L_3362719_3362998 chr2L_3362443_3362718 chr2L_3360996_3361443;chr2L_3362999_3363195 22.22 22.22 22.22 41.38 15.00 23.81 28.12 45.16 34.88 14.29 22.22 32.08 33.33 35.00 25.93 52.00 22.22 23.08 35.00 26.00 23.81 31.95 23.68 13.89 19.35 41.67 27.27 33.33 17.65 25.00 19.35 13.79 25.71 28.12 17.95 25.00 23.33 17.14 32.56 25.93 16.67 17.86 26.32 19.44 33.33 17.14 15.00 13.45 20.37 10.34 10.00 21.74 13.79 14.29 20.00 18.18 20.00 13.79 K cassette CG9850,I_chr2R_19641861_19643562 chr2R - chr2R_19641861_19644937 chr2R_19641861_19643017;chr2R_19644690_19644937 chr2R_19643018_19644689 chr2R_19641761_19641860;chr2R_19644938_19645017 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG8009,CG18628 chr3L + chr3L_10631595_10631665 chr3L_10631594_10631595;chr3L_10631665_10631666 chr3L_10631534_10631594;chr3L_10631666_10631734 3.73 6.00 0.00 3.28 0.00 2.94 7.32 4.65 0.00 0.00 NA 8.86 9.52 0.00 0.00 0.00 0.00 0.00 9.38 5.19 0.00 0.00 5.75 4.88 3.39 7.69 4.48 5.77 21.05 3.33 0.00 7.32 0.00 6.67 4.44 7.14 6.25 0.00 5.81 0.00 0.00 0.00 3.85 0.00 5.13 3.61 1.47 6.06 0.00 2.60 5.19 6.67 6.56 5.88 0.00 2.94 8.75 11.63 K intron_retention CG6659 chrX - chrX_18550679_18550746 chrX_18550678_18550679;chrX_18550746_18550747 chrX_18550357_18550678;chrX_18550747_18551008 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.43 1.72 2.97 1.69 0.00 2.56 1.92 7.55 0.00 1.32 0.00 2.94 2.30 0.00 0.00 1.42 0.00 0.00 3.85 9.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 4.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Hpr1 chr3R - chr3R_1645367_1645420 chr3R_1645366_1645367;chr3R_1645420_1645421 chr3R_1644352_1645366;chr3R_1645421_1645723 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 3.23 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 NA NA 0.00 0.00 0.00 3.85 0.00 K alternative_last_exon Ard1,noncoding_11800 chr3L + chr3L_9965498_9966193 chr3L_9965498_9966021,chr3L_9965498_9965994,chr3L_9965498_9965980 chr3L_9966194_9967123 chr3L_9966022_9966101 chr3L_9965419_9965497 2.22 1.42 1.75 7.86 2.97 2.17 4.48 1.38 1.61 9.09 7.41 2.37 3.39 3.19 0.72 2.03 3.66 1.72 3.12 1.62 5.80 0.00 1.29 0.65 1.23 3.75 2.90 4.21 4.69 1.85 1.00 3.45 1.08 2.24 0.90 1.12 2.22 2.42 1.52 2.75 2.88 3.32 2.60 5.04 3.98 2.19 0.66 4.09 2.62 1.33 0.64 1.94 0.43 0.72 2.36 0.67 1.17 4.38 K intron_retention CG7028,I_chr3L_207277_208117 chr3L - chr3L_208667_208725 chr3L_208666_208667;chr3L_208725_208726 chr3L_208372_208666;chr3L_208726_208908 100.00 100.00 95.65 98.18 100.00 100.00 98.08 100.00 100.00 100.00 100.00 97.96 95.83 100.00 100.00 100.00 96.67 100.00 100.00 95.74 94.44 100.00 100.00 100.00 100.00 100.00 96.97 95.83 92.86 100.00 98.39 100.00 100.00 98.15 94.12 100.00 100.00 100.00 100.00 96.67 93.33 94.00 100.00 96.77 94.12 100.00 100.00 93.75 98.04 100.00 100.00 96.00 100.00 95.24 100.00 95.83 96.00 100.00 K intron_retention CG2219,I_chr4_199813_199889,RI_chr4_202143_202194 chr4 - chr4_199463_199562 chr4_199462_199463;chr4_199562_199563 chr4_199407_199462;chr4_199563_199629 74.38 63.16 63.64 81.08 69.23 93.75 93.10 83.78 82.98 NA 77.78 70.73 78.95 87.50 73.33 78.05 80.00 78.95 82.14 78.57 100.00 NA 59.09 71.43 NA 66.67 91.67 87.50 NA 69.23 65.00 NA 68.75 84.44 90.00 NA NA NA NA 95.24 81.82 74.29 66.67 60.00 81.82 73.08 70.59 81.82 74.47 63.64 68.42 69.23 71.43 57.14 84.21 70.00 62.50 73.08 K intron_retention Cip4,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4363386_4363987 chr3L_4363385_4363386;chr3L_4363987_4363988 chr3L_4363286_4363385;chr3L_4363988_4364067 88.89 NA NA NA NA NA 58.82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.91 100.00 NA NA 88.89 NA 77.78 100.00 NA NA NA NA NA NA NA NA NA 88.89 73.33 NA NA NA NA 87.50 91.67 93.75 NA NA 100.00 NA 88.89 NA NA NA NA 81.82 K cassette CG8979 chr2R - chr2R_7855985_7856244 chr2R_7855985_7856051;chr2R_7856115_7856244 chr2R_7856052_7856114 chr2R_7855789_7855984;chr2R_7856245_7856313 3.78 4.17 2.56 8.33 0.00 0.00 3.28 2.27 1.28 5.56 4.76 2.44 11.11 2.94 2.86 1.85 3.03 6.67 2.56 5.71 3.85 2.94 4.76 3.70 6.25 4.76 0.00 0.00 6.67 NA 5.56 NA NA 2.27 4.17 13.33 2.94 7.14 5.56 9.09 NA 5.26 3.70 1.75 NA 5.88 0.00 NA 3.64 4.35 8.00 2.08 NA NA 5.71 5.56 2.70 NA K multi_cassette CG1316 chr3L + chr3L_4284991_4285424 chr3L_4284991_4285052;chr3L_4285117_4285174;chr3L_4285273_4285424 chr3L_4285053_4285116;chr3L_4285175_4285272 chr3L_4284605_4284990;chr3L_4285425_4285531 100.00 100.00 100.00 98.11 100.00 100.00 98.36 100.00 100.00 100.00 97.22 98.88 100.00 100.00 100.00 98.39 100.00 100.00 100.00 98.92 100.00 98.59 100.00 98.48 100.00 92.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 N jcn_only_AA Hrb98DE,RI_chr3R_24429041_24431183 chr3R + chr3R_24429421_24429573;chr3R_24429421_24431183 chr3R_24429421_24429782 chr3R_24429330_24429420;chr3R_24431184_24431283 98.17 98.56 98.62 98.84 97.72 97.66 98.61 98.51 97.92 99.50 100.00 94.48 96.47 97.48 98.37 98.69 99.09 95.85 99.55 98.56 100.00 99.86 97.06 97.32 99.21 99.45 98.77 96.36 98.46 97.11 96.61 97.57 99.04 98.68 96.72 98.26 97.61 98.17 97.23 96.76 99.65 98.21 99.68 97.80 95.14 97.86 96.24 98.88 98.02 98.72 97.96 98.73 92.13 97.54 98.73 97.84 94.73 96.05 K intron_retention CG9548 chr2L - chr2L_6490374_6490438 chr2L_6490373_6490374;chr2L_6490438_6490439 chr2L_6490288_6490373;chr2L_6490439_6490629 0.00 2.04 1.41 6.25 0.00 1.96 2.13 3.03 0.00 0.00 5.26 0.00 2.56 0.00 2.82 0.00 0.00 0.00 0.00 0.62 2.17 0.00 3.70 1.12 0.00 0.00 13.95 14.58 6.67 0.00 1.37 0.00 0.00 1.32 0.00 5.80 0.00 0.00 1.85 0.87 4.21 0.00 0.00 0.00 0.00 2.26 2.78 0.00 2.88 0.00 0.00 0.00 0.00 3.81 3.33 0.00 2.70 0.00 K alternative_acceptor ND23 chr3R - chr3R_11662005_11662076 chr3R_11662009_11662076 chr3R_11662077_11662145;chr3R_11661940_11662004 100.00 100.00 100.00 98.90 100.00 100.00 100.00 100.00 99.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.53 100.00 100.00 100.00 99.30 100.00 100.00 100.00 100.00 100.00 100.00 98.67 100.00 100.00 100.00 99.21 100.00 98.78 100.00 99.12 100.00 100.00 100.00 100.00 100.00 100.00 98.75 100.00 99.30 100.00 99.15 100.00 99.37 100.00 99.29 100.00 98.86 100.00 99.64 100.00 K jcn_only_AD CG40191,I_chr2RHet_391475_391828,I_chr2RHet_392279_392824 chr2RHet + chr2RHet_390972_391180;chr2RHet_391127_391180 chr2RHet_391004_391180 chr2RHet_391181_391278;chr2RHet_390957_390971 0.00 0.00 3.70 0.00 0.00 1.92 2.29 0.82 1.75 NA 2.00 1.44 2.99 1.59 3.39 1.77 0.00 0.00 1.30 0.00 0.00 0.00 3.57 0.00 0.00 2.78 0.00 0.00 0.00 0.00 1.39 0.00 3.45 0.00 2.17 0.00 0.00 0.00 0.00 0.00 1.59 0.00 2.00 0.00 0.00 0.00 0.00 4.00 0.82 2.27 0.00 0.00 0.00 0.00 1.64 2.00 3.77 0.00 K intron_retention Eb1,RI_chr2R_2640290_2642206,I_chr2R_2640494_2642206,I_chr2R_2641187_2642206,RI_chr2R_2641944_2642025,I_chr2R_2641954_2642206,I_chr2R_2642491_2642549 chr2R + chr2R_2641009_2642209 chr2R_2641008_2641009;chr2R_2642209_2642210 chr2R_2640732_2641008;chr2R_2642210_2642306 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 92.86 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 70.00 95.00 K intron_retention I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,RI_chr3R_17189607_17189988,I_chr3R_17190098_17190207,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17189607_17200781 chr3R_17189606_17189607;chr3R_17200781_17200782 chr3R_17189507_17189606;chr3R_17200782_17200881 20.36 NA NA NA NA NA NA 41.67 NA NA NA 33.33 NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.14 NA 17.65 NA NA NA NA NA NA 50.00 7.69 NA NA NA NA NA NA NA 14.29 K intron_retention CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042891_5043077 chr2L_5042890_5042891;chr2L_5043077_5043078 chr2L_5042835_5042890;chr2L_5043078_5043083 61.40 66.67 57.58 62.00 69.23 52.63 74.14 60.71 66.33 42.86 65.22 62.32 40.74 58.33 58.33 60.00 61.11 71.43 67.57 55.56 62.50 47.06 60.53 63.16 65.52 78.57 84.85 46.67 76.92 72.22 59.46 58.33 63.64 61.40 41.18 60.00 79.55 68.18 74.07 68.18 66.67 57.14 53.12 83.78 53.33 53.33 64.71 70.00 65.52 41.18 62.86 56.41 60.87 77.78 52.38 60.00 58.54 53.85 K multi_cassette DCAP,E_chr2R_6159586_6174578,I_chr2R_6164310_6172914,I_chr2R_6172307_6179999,I_chr2R_6178643_6181126,RI_chr2R_6183553_6192101,I_chr2R_6188094_6192101 chr2R + chr2R_6172307_6182116 chr2R_6172307_6181126;chr2R_6181267_6181365;chr2R_6181439_6181654;chr2R_6181688_6182116 chr2R_6181127_6181266;chr2R_6181366_6181438;chr2R_6181655_6181687 chr2R_6172207_6172306;chr2R_6182117_6182270 87.50 83.33 100.00 75.00 83.33 80.00 100.00 100.00 100.00 NA NA 85.71 100.00 100.00 100.00 87.50 80.00 100.00 NA 100.00 100.00 NA 83.33 100.00 100.00 66.67 100.00 NA 75.00 100.00 80.00 NA 87.50 100.00 NA 100.00 85.71 75.00 85.71 83.33 66.67 75.00 75.00 75.00 100.00 100.00 100.00 80.00 100.00 100.00 83.33 100.00 100.00 80.00 100.00 80.00 83.33 77.78 N cassette Eaf,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3287518_3293710 chr2R_3287518_3293542;chr2R_3293636_3293710 chr2R_3293543_3293635 chr2R_3287379_3287517;chr2R_3293711_3294565 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 86.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG6664 chr3L - chr3L_17008367_17008842 chr3L_17008367_17008772 chr3L_17008241_17008366;chr3L_17008843_17008976 3.85 3.12 6.78 7.45 0.00 3.51 7.04 0.00 4.90 5.71 1.82 5.00 4.00 4.65 1.37 6.00 13.16 4.55 1.79 1.90 7.69 1.75 2.44 2.70 2.22 4.69 4.94 4.17 4.23 2.67 10.20 5.56 2.26 1.27 12.73 3.64 1.49 3.28 3.57 1.82 3.85 7.62 4.26 2.78 1.75 7.06 2.33 3.36 3.00 0.00 9.46 1.64 4.84 7.14 2.78 5.36 6.78 5.26 K cassette CG14741 chr3R - chr3R_7899339_7900895 chr3R_7899339_7899925;chr3R_7900593_7900895 chr3R_7899926_7900592 chr3R_7899048_7899338;chr3R_7900896_7901144 27.94 30.54 28.64 35.19 12.74 14.71 32.08 35.94 27.94 16.77 13.60 33.76 3.88 27.75 24.90 57.46 35.64 25.35 25.65 23.70 30.22 24.61 34.29 23.64 35.39 23.05 25.88 17.78 42.51 22.40 54.51 26.97 38.91 28.04 26.54 51.98 21.92 21.62 27.83 11.60 34.96 29.96 27.27 34.24 43.64 43.95 26.98 28.62 35.61 17.39 23.84 26.01 49.17 36.67 25.31 38.24 48.85 42.94 K cassette Cht3,I_chr2L_22898079_22904949,I_chr2L_22905136_22905190,I_chr2L_22908837_22917901,I_chr2L_22917957_22918428 chr2L - chr2L_22898079_22904949 chr2L_22898079_22898138;chr2L_22898419_22904949 chr2L_22898139_22898418 chr2L_22897979_22898078;chr2L_22904950_22905049 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 N intron_retention CG16971,CG33229,I_chr3L_225856_225909,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_225145_225725 chr3L_225144_225145;chr3L_225725_225726 chr3L_224973_225144;chr3L_225726_225849 100.00 52.94 100.00 100.00 100.00 100.00 56.25 48.15 57.58 NA NA 65.38 58.82 100.00 100.00 100.00 NA NA 100.00 40.00 NA 100.00 52.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 40.91 NA NA 68.00 NA 68.18 NA 31.25 NA NA NA 57.89 57.89 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention RpS12,I_chr3L_13016626_13017469,snoRNA:Me28S-A774b,snoRNA:Me28S-A774a chr3L + chr3L_13016626_13016831 chr3L_13016625_13016626;chr3L_13016831_13016832 chr3L_13016588_13016625;chr3L_13016832_13016966 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.06 0.00 0.00 0.00 0.07 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.04 0.00 0.00 0.00 K jcn_only_AD RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12914849_12916177;chr2R_12914845_12916177;chr2R_12914941_12916177 chr2R_12914834_12916177 chr2R_12916178_12916526;chr2R_12914830_12914833 13.89 NA NA 18.18 NA NA 13.89 10.26 23.26 NA NA 18.60 22.73 12.12 NA 11.90 NA NA 13.64 NA NA 13.04 16.00 NA NA NA NA NA 28.00 NA 9.68 NA NA 7.14 NA 17.39 NA NA NA 17.39 NA 6.90 10.00 4.76 NA 23.81 NA 23.91 14.29 NA 4.17 NA NA NA 9.52 NA NA 18.52 N intron_retention Not1,I_chr2R_5463624_5463682 chr2R - chr2R_5463890_5465342 chr2R_5463889_5463890;chr2R_5465342_5465343 chr2R_5463863_5463889;chr2R_5465343_5465387 100.00 100.00 100.00 71.43 100.00 NA 100.00 100.00 68.75 NA 100.00 100.00 50.00 100.00 100.00 79.31 100.00 100.00 100.00 100.00 NA 35.71 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 78.12 NA 100.00 NA NA NA 100.00 NA NA NA K alternative_acceptor CG12582 chr3R + chr3R_25016_27564 chr3R_25016_25084 chr3R_24727_25015;chr3R_27565_28044 1.27 1.02 1.10 0.52 0.00 1.03 2.94 1.21 1.66 2.70 1.39 1.57 1.94 1.94 0.74 1.41 0.83 1.19 0.70 1.08 1.41 1.85 1.75 0.87 1.72 0.00 0.92 1.85 0.00 1.82 0.66 1.72 3.70 1.30 1.27 0.00 0.91 1.61 1.06 2.00 2.17 0.87 1.96 1.29 0.00 1.11 1.32 3.77 1.58 0.68 1.61 1.04 1.43 1.59 0.65 1.23 0.86 1.11 K alternative_acceptor pim chr2L + chr2L_10363139_10363201 chr2L_10363139_10363185 chr2L_10362977_10363138;chr2L_10363202_10363525 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD gus,I_chr2R_1009158_1009345,RI_chr2R_1009158_1011540,I_chr2R_1009346_1015730 chr2R - chr2R_1009158_1009273;chr2R_1009158_1009241 chr2R_1009158_1009277 chr2R_1009058_1009157;chr2R_1009278_1009300 18.79 NA NA 18.52 NA NA NA 15.00 19.23 NA NA 18.18 NA NA NA 19.05 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.12 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 21.74 NA NA NA NA NA NA NA NA 26.09 K alternative_donor Zyx102EF,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1081261_1081364;chr4_1081261_1081366 chr4_1081261_1081398 chr4_1081180_1081260;chr4_1081399_1081402 14.84 NA NA 10.00 NA NA 15.38 NA 7.69 NA NA 25.00 NA 16.67 NA 9.09 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA 30.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 18.18 NA NA NA NA NA NA NA NA NA K jcn_only_AD I_chr2L_11009331_11009442,dUTPase,I_chr2L_11011380_11011453 chr2L + chr2L_11011394_11011471;chr2L_11011380_11011471 chr2L_11011419_11011471 chr2L_11011472_11011553;chr2L_11011335_11011379 1.62 1.75 1.40 2.36 3.27 1.98 0.69 2.02 2.55 1.01 0.00 1.31 1.69 0.88 2.45 1.29 1.98 1.44 0.00 1.74 3.76 1.09 0.87 0.00 0.00 0.00 5.00 1.61 0.00 3.92 1.00 2.94 0.00 1.23 1.92 0.00 1.06 1.45 1.16 3.64 NA 2.55 1.69 0.00 1.92 2.20 1.75 3.45 0.78 1.64 2.27 1.08 4.13 4.21 4.00 0.78 1.81 0.00 K alternative_acceptor fs(1)h,I_chrX_7947328_7948140,I_chrX_7950171_7952371,I_chrX_7954192_7955240 chrX - chrX_7947313_7948155 chrX_7947328_7948155 chrX_7948156_7948240;chrX_7947228_7947312 92.16 92.11 92.11 91.84 87.10 87.50 80.49 96.43 91.67 88.46 88.46 89.39 100.00 89.29 89.80 96.77 96.43 100.00 96.67 92.42 85.71 96.77 86.36 91.67 88.00 95.56 100.00 93.75 93.75 92.16 93.75 100.00 94.20 96.30 93.33 100.00 95.95 88.64 98.41 91.38 95.00 95.35 87.50 89.47 90.48 84.00 94.74 90.74 94.44 94.44 93.18 90.32 91.30 78.57 94.00 88.24 92.31 80.95 K intron_retention spin,I_chr2R_12013288_12013847 chr2R + chr2R_12021189_12023531 chr2R_12021188_12021189;chr2R_12023531_12023532 chr2R_12020927_12021188;chr2R_12023532_12023630 2.42 0.00 4.12 13.48 3.95 1.30 3.12 4.07 3.29 1.65 5.97 3.98 0.00 0.00 4.63 2.54 3.28 1.45 1.19 2.16 3.66 2.98 2.63 1.97 3.70 2.94 5.70 4.88 2.42 2.14 1.08 1.69 1.72 2.99 1.49 2.42 2.61 0.00 3.37 1.44 3.65 0.85 0.00 3.03 0.00 1.25 1.48 0.81 3.54 2.61 1.09 3.23 0.00 0.82 4.00 1.36 0.00 0.89 K alternative_donor I_chr3L_3151185_3151263,CG32280 chr3L + chr3L_3165222_3167941;chr3L_3165352_3167941;chr3L_3165390_3167941;chr3L_3165704_3167941;chr3L_3165407_3167941 chr3L_3165255_3167941 chr3L_3167942_3168265;chr3L_3165212_3165221 26.79 NA NA 25.00 NA NA 0.00 NA 25.00 0.00 NA 33.33 NA NA NA 25.00 NA 50.00 NA NA NA 0.00 28.57 NA NA NA NA NA 25.00 NA NA NA 0.00 NA NA NA 28.57 NA NA 33.33 NA NA NA NA 33.33 66.67 33.33 0.00 0.00 42.86 25.00 NA NA NA NA NA 28.57 33.33 K intron_retention cdc2 chr2L - chr2L_10385083_10385139 chr2L_10385082_10385083;chr2L_10385139_10385140 chr2L_10384662_10385082;chr2L_10385140_10385643 0.00 0.00 6.12 0.00 0.00 0.00 2.35 3.41 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 4.23 3.26 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 3.39 0.00 1.06 0.00 0.00 N multi_cassette CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525393_1527189 chr3L_1525393_1525641;chr3L_1525704_1526333;chr3L_1526399_1526659;chr3L_1526732_1527189 chr3L_1525642_1525703;chr3L_1526334_1526398;chr3L_1526660_1526731 chr3L_1525293_1525392;chr3L_1527190_1527240 18.45 NA NA NA NA NA NA NA NA NA NA 93.33 NA NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.33 NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG42533,EI_chr2L_7473200_7473297,RI_chr2L_7473200_7473419,F_chr2L_7476906_7476978 chr2L - chr2L_7473200_7473656;chr2L_7473200_7473297;chr2L_7473200_7473419 chr2L_7473200_7473770 chr2L_7473100_7473199;chr2L_7473771_7473889 1.14 5.88 0.00 6.00 NA 0.00 2.04 2.00 1.14 0.00 0.00 2.86 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.06 0.00 4.76 0.00 NA 0.00 0.00 0.00 2.50 4.08 0.00 3.12 2.44 2.94 5.00 2.50 2.74 1.82 2.56 6.06 2.22 0.00 0.00 3.12 0.00 2.47 0.00 0.00 4.17 0.00 8.70 5.13 3.23 5.00 0.00 K intron_retention srp,I_chr3R_11825782_11827473,I_chr3R_11826508_11826910 chr3R + chr3R_11826508_11827473 chr3R_11826507_11826508;chr3R_11827473_11827474 chr3R_11826408_11826507;chr3R_11827474_11827573 13.16 14.81 8.33 25.00 10.53 8.33 21.05 17.65 13.64 10.53 7.69 13.21 26.09 17.65 8.33 21.21 25.00 10.00 17.24 14.29 NA 17.24 13.64 21.21 13.04 19.05 17.07 23.26 12.77 10.87 14.29 12.50 11.76 13.16 15.79 8.89 12.50 23.08 14.29 8.33 17.14 13.11 NA 12.73 6.00 12.24 12.50 8.33 12.73 15.00 16.22 10.71 6.06 10.53 18.52 18.52 4.65 3.23 K alternative_acceptor Ddip2,I_chr3L_252776_253313 chr3L - chr3L_252945_253313 chr3L_252996_253313 chr3L_253314_253413;chr3L_252835_252944 42.86 52.00 36.67 58.82 33.33 36.84 53.57 45.00 48.98 41.67 50.00 57.58 52.63 50.00 33.33 33.33 45.45 41.18 42.31 36.36 33.33 62.50 37.50 41.67 56.25 42.86 41.18 66.67 77.78 29.63 23.08 53.33 39.29 44.12 55.56 50.00 30.30 41.67 46.15 45.65 50.00 52.50 50.00 41.18 53.85 39.13 40.91 42.86 42.86 39.29 50.00 35.29 29.41 46.15 45.83 26.09 46.15 36.36 K alternative_acceptor Syb chr2R - chr2R_6138650_6139432 chr2R_6138719_6139432 chr2R_6139433_6139489;chr2R_6138448_6138649 26.02 22.71 22.62 29.33 27.67 22.75 27.64 27.06 26.27 27.78 25.00 24.24 23.70 20.53 23.33 26.08 23.10 23.83 25.21 26.82 23.01 31.53 24.03 27.13 25.42 24.87 35.48 43.79 33.33 29.80 21.95 28.14 31.45 24.95 23.59 18.18 26.65 26.02 25.99 32.82 30.14 27.93 21.67 30.51 32.89 29.33 25.56 39.47 24.56 25.00 26.59 29.41 25.19 23.22 21.31 22.65 27.49 36.31 K jcn_only_AD trbd chr3R - chr3R_5535271_5535611;chr3R_5535271_5536695 chr3R_5535271_5536202 chr3R_5535110_5535270;chr3R_5536696_5536730 91.67 90.91 75.00 80.00 95.00 NA 88.57 84.38 92.98 NA 75.00 76.74 87.50 NA 90.32 92.00 90.00 58.33 85.71 95.65 NA 39.13 96.77 96.00 NA 95.24 96.15 NA 76.00 NA NA NA 88.24 86.11 95.00 100.00 95.83 91.67 100.00 92.68 NA 86.67 NA 100.00 NA 86.96 NA NA 93.10 91.67 100.00 100.00 NA NA 90.91 NA 95.24 NA K cassette CG6043,I_chr2L_13267973_13268086 chr2L + chr2L_13274377_13275587 chr2L_13274377_13274642;chr2L_13274851_13275587 chr2L_13274643_13274850 chr2L_13274310_13274376;chr2L_13275588_13275628 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA K intron_retention Grip128,CG9203 chrX - chrX_15362483_15362546 chrX_15362482_15362483;chrX_15362546_15362547 chrX_15362314_15362482;chrX_15362547_15364054 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 20.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 12.00 0.00 NA 0.00 0.00 7.41 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 7.14 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA K alternative_donor CG5850,I_chr2L_9963013_9963451 chr2L - chr2L_9961615_9961794 chr2L_9961615_9961728 chr2L_9961359_9961614;chr2L_9961795_9962059 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.84 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention SPoCk,I_chr3L_22776339_22776519,I_chr3L_22777865_22778359 chr3L + chr3L_22766852_22767837 chr3L_22766851_22766852;chr3L_22767837_22767838 chr3L_22766783_22766851;chr3L_22767838_22768237 100.00 NA NA 100.00 NA NA NA 100.00 92.86 NA NA 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 90.00 NA 100.00 NA NA NA NA NA 93.33 NA NA NA NA NA 91.67 100.00 NA NA NA NA NA 100.00 NA NA NA K jcn_only_AA CG10126 chr3R - chr3R_8682298_8683211 chr3R_8682328_8683211 chr3R_8683212_8683280;chr3R_8682179_8682297 98.02 100.00 100.00 98.25 NA 100.00 100.00 96.00 98.48 NA 95.24 100.00 NA 100.00 96.88 96.30 100.00 NA 96.30 97.56 100.00 100.00 100.00 NA NA 96.00 100.00 NA NA 96.15 97.78 NA NA 100.00 100.00 84.62 96.30 NA NA 100.00 NA 96.30 NA NA 95.00 97.06 100.00 NA 95.56 96.77 100.00 NA NA 95.45 95.83 NA NA NA K intron_retention Msp-300,I_chr2L_5154189_5154247,I_chr2L_5174808_5176751,I_chr2L_5185965_5188116,snoRNA:Psi28S-2263,I_chr2L_5197634_5197866 chr2L + chr2L_5155850_5157873 chr2L_5155849_5155850;chr2L_5157873_5157874 chr2L_5155589_5155849;chr2L_5157874_5157965 9.12 NA NA 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG17159,CG17162,noncoding_25215 chrXHet - chrXHet_69232_75250;chrXHet_69232_75279 chrXHet_69232_75430 chrXHet_69195_69231;chrXHet_75431_75453 0.00 0.00 0.00 3.03 0.00 7.14 3.45 3.03 4.44 0.00 6.25 3.23 0.00 5.26 5.00 0.00 6.67 0.00 4.35 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 18.18 0.00 0.00 0.00 16.67 2.70 0.00 0.00 0.00 0.00 7.14 4.55 0.00 2.78 5.00 0.00 0.00 0.00 0.00 4.17 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 K intron_retention ImpL2,I_chr3L_4225707_4225972,I_chr3L_4225707_4226245,I_chr3L_4225707_4226564,I_chr3L_4226910_4226993 chr3L - chr3L_4225707_4226245 chr3L_4225706_4225707;chr3L_4226245_4226246 chr3L_4225607_4225706;chr3L_4226246_4226345 77.35 88.89 77.78 93.75 NA 66.67 63.16 58.33 71.43 87.50 NA 52.63 NA 72.73 90.91 66.67 NA 66.67 90.91 92.31 55.56 80.95 86.36 76.92 66.67 88.89 75.00 74.29 83.33 83.33 38.46 66.67 86.67 85.71 92.31 84.62 61.90 81.82 69.23 83.33 92.86 90.91 NA 66.67 58.33 77.78 69.23 90.00 75.00 78.95 65.00 100.00 NA 63.64 NA 72.73 NA NA K alternative_acceptor CG8949,I_chrX_16971474_16971708,I_chrX_16971501_16971713 chrX - chrX_16971474_16971713 chrX_16971501_16971713 chrX_16971714_16971808;chrX_16971401_16971473 5.22 5.71 7.32 4.48 12.50 5.13 6.52 11.32 8.64 4.35 0.00 5.19 5.26 2.44 6.25 17.14 0.00 0.00 10.26 5.56 3.33 11.76 4.84 4.17 11.11 3.70 12.82 5.00 13.64 2.70 5.00 0.00 15.38 8.93 4.55 20.00 6.00 2.94 6.98 4.92 NA 5.63 9.68 6.98 4.35 14.81 4.35 5.17 8.82 9.38 4.84 3.12 0.00 0.00 8.33 4.76 0.00 8.11 K multi_cassette CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261460_265805 chr4_261460_263086;chr4_263306_263891;chr4_264212_264259;chr4_264375_265805 chr4_263087_263305;chr4_263892_264211;chr4_264260_264374 chr4_261360_261459;chr4_265806_265905 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor cryptocephal,noncoding_4181,I_chr2L_21311307_21311752,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21311307_21311752;chr2L_21311532_21311752;chr2L_21311215_21311752 chr2L_21311033_21311752 chr2L_21311753_21311852;chr2L_21310948_21311032 82.61 85.64 88.81 95.98 84.38 88.91 90.53 94.45 88.18 78.08 87.85 91.86 90.85 90.24 89.35 79.70 90.27 81.11 91.53 89.37 88.52 78.52 86.50 74.32 84.77 95.18 78.61 58.31 57.38 77.81 88.36 65.32 77.33 92.92 82.61 72.76 69.13 79.41 73.38 62.07 79.86 89.53 91.43 80.49 66.02 78.84 74.34 80.52 91.34 73.65 83.18 77.69 75.71 71.12 91.70 75.25 78.76 84.50 K alternative_donor chinmo chr2L + chr2L_1651412_1652774;chr2L_1651430_1652774 chr2L_1651713_1652774 chr2L_1652775_1653511;chr2L_1651300_1651411 84.00 84.21 91.67 86.84 100.00 80.00 91.30 88.89 95.00 100.00 85.00 84.31 86.67 88.46 79.41 80.77 81.82 84.62 96.67 73.58 90.00 100.00 78.57 85.71 81.25 79.17 85.71 83.33 80.00 81.82 93.10 87.50 85.71 82.00 84.21 64.71 100.00 83.33 80.00 86.36 66.67 82.54 84.00 92.86 77.78 86.67 84.62 78.57 86.79 77.78 79.17 76.47 71.43 81.82 78.79 81.82 81.25 81.25 K alternative_donor wol chr2L - chr2L_8302333_8302523 chr2L_8302333_8302496 chr2L_8301936_8302332;chr2L_8302524_8302698 0.00 0.00 0.87 0.00 0.00 0.00 1.33 1.00 1.40 0.00 0.00 1.05 1.19 0.00 0.00 0.60 0.00 0.00 0.00 1.26 0.00 0.00 0.75 0.00 2.94 0.79 0.74 1.05 2.94 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 1.80 1.75 0.52 0.00 0.00 1.54 1.82 0.00 2.13 0.50 0.72 0.75 0.00 1.00 0.00 0.00 0.00 0.56 3.09 K intron_retention Rbp2,I_chrX_16343528_16343906 chrX + chrX_16345593_16345734 chrX_16345592_16345593;chrX_16345734_16345735 chrX_16345308_16345592;chrX_16345735_16345764 14.81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.81 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N jcn_only_AA TepIV,EI_chr2L_19548696_19549582 chr2L + chr2L_19548696_19549858;chr2L_19548696_19549582 chr2L_19548696_19551681 chr2L_19548596_19548695 0.00 0.00 0.00 14.00 0.00 0.00 0.00 10.78 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 17.11 0.00 0.00 0.00 0.00 11.45 22.58 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 15.48 0.00 NA NA 0.00 NA 0.00 NA K cassette Ser,I_chr3R_23013597_23017227 chr3R - chr3R_23013597_23017227 chr3R_23013597_23014068;chr3R_23014187_23017227 chr3R_23014069_23014186 chr3R_23013497_23013596;chr3R_23017228_23017327 100.00 95.45 100.00 96.67 100.00 92.31 100.00 97.14 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 90.91 93.33 97.44 100.00 92.86 100.00 94.74 100.00 100.00 100.00 85.71 50.00 100.00 90.91 100.00 100.00 97.30 93.33 89.47 100.00 100.00 100.00 96.43 87.50 100.00 93.33 90.48 87.50 100.00 100.00 88.24 100.00 87.50 95.65 92.86 90.00 100.00 100.00 100.00 100.00 88.89 K intron_retention CalpA chr2R + chr2R_15316785_15316842 chr2R_15316784_15316785;chr2R_15316842_15316843 chr2R_15316742_15316784;chr2R_15316843_15316984 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.88 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG1578,RI_chrX_11709573_11709680,I_chrX_11709573_11710263,RI_chrX_11709573_11710335,noncoding_23225,I_chrX_11710380_11710454 chrX - chrX_11709573_11709680;chrX_11709573_11710458;chrX_11709573_11710335;chrX_11709573_11710263 chrX_11709573_11710454 chrX_11709473_11709572;chrX_11710459_11710479 52.94 44.44 57.14 35.29 62.50 50.00 33.33 42.11 50.00 75.00 60.00 47.06 62.50 50.00 45.45 52.94 40.00 71.43 50.00 66.67 66.67 50.00 61.11 60.00 55.56 50.00 70.00 62.50 36.36 57.14 44.44 66.67 50.00 41.18 40.00 57.14 77.78 70.00 80.00 50.00 50.00 35.00 60.00 68.75 42.86 40.00 87.50 41.67 43.48 66.67 45.45 66.67 71.43 80.00 44.44 57.14 75.00 50.00 K intron_retention loj,F_chr3L_6089225_6089305 chr3L + chr3L_6088444_6088509 chr3L_6088443_6088444;chr3L_6088509_6088510 chr3L_6088213_6088443;chr3L_6088510_6088587 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Akap200,I_chr2L_8426446_8426873 chr2L + chr2L_8428068_8430280 chr2L_8428068_8428319;chr2L_8429463_8430280 chr2L_8428320_8429462 chr2L_8427615_8428067;chr2L_8430281_8431026 21.64 15.00 33.55 20.62 22.94 24.85 30.52 21.51 21.23 17.06 31.14 23.47 13.28 22.68 20.49 46.02 24.67 16.83 30.04 31.17 31.78 23.69 18.52 15.46 12.87 21.48 16.56 16.02 21.64 21.18 27.52 21.69 38.53 25.59 17.70 25.75 16.84 12.35 14.74 23.00 28.05 22.18 25.42 22.35 32.82 19.45 14.40 48.25 25.06 10.78 17.85 14.48 21.81 14.79 19.97 16.67 20.92 52.81 K cassette spen,I_chr2L_187184_187481,I_chr2L_200676_200752 chr2L + chr2L_163002_175360 chr2L_163002_164158;chr2L_164235_175360 chr2L_164159_164234 chr2L_162988_163001;chr2L_175361_175422 6.67 NA NA NA NA NA 5.56 7.69 4.76 NA NA 7.69 NA NA NA 5.56 NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG41378,I_chr2RHet_1545717_1605870,I_chr2RHet_1545717_1621473,I_chr2RHet_1545717_1621569,RI_chr2RHet_1606049_1621284 chr2RHet - chr2RHet_1545717_1605870 chr2RHet_1545717_1605712;chr2RHet_1605787_1605870 chr2RHet_1605713_1605786 chr2RHet_1545666_1545716;chr2RHet_1605871_1605970 100.00 95.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 97.06 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 91.67 96.97 94.74 100.00 100.00 100.00 92.86 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 K intron_retention klar,noncoding_9693,I_chr3L_462559_472609,RI_chr3L_517594_539898 chr3L - chr3L_436850_440493 chr3L_436849_436850;chr3L_440493_440494 chr3L_436674_436849;chr3L_440494_441091 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA 14.29 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389272_2395659 chrX_2389272_2390808;chrX_2390959_2391350;chrX_2391522_2393243;chrX_2393712_2394269;chrX_2394396_2395151;chrX_2395275_2395659 chrX_2390809_2390958;chrX_2391351_2391521;chrX_2393244_2393711;chrX_2394270_2394395;chrX_2395152_2395274 chrX_2389172_2389271;chrX_2395660_2395759 33.33 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor RI_chrX_1936386_1947849,RI_chrX_1945968_1947849,CG4313 chrX + chrX_1945968_1947849 chrX_1947339_1947849 chrX_1947850_1947949;chrX_1945868_1945967 73.22 75.00 66.67 NA 66.67 50.00 66.67 50.00 55.56 100.00 NA 75.00 40.00 75.00 66.67 80.00 100.00 100.00 75.00 71.43 NA 50.00 100.00 100.00 66.67 75.00 100.00 66.67 NA 100.00 66.67 50.00 100.00 50.00 100.00 66.67 80.00 66.67 100.00 83.33 NA 57.14 75.00 100.00 66.67 75.00 66.67 66.67 83.33 75.00 50.00 50.00 66.67 50.00 75.00 40.00 75.00 75.00 K jcn_only_AD Lam chr2L + chr2L_5542656_5543324;chr2L_5543273_5543324;chr2L_5542864_5543324 chr2L_5542661_5543324 chr2L_5543325_5543794;chr2L_5542527_5542655 98.59 98.95 98.59 99.21 97.59 100.00 98.51 97.56 97.56 98.60 96.51 98.21 97.10 97.37 95.83 98.85 96.43 98.94 96.77 98.94 98.51 98.37 99.51 99.47 98.32 100.00 100.00 99.40 97.35 99.13 98.90 98.95 97.42 97.48 98.37 98.36 99.61 100.00 97.60 98.85 100.00 97.40 92.47 98.11 98.30 100.00 97.44 99.09 97.33 100.00 98.64 100.00 99.08 98.86 94.85 99.34 98.57 98.88 K jcn_only_AA Zyx102EF,I_chr4_1079131_1080044,I_chr4_1079946_1080044,RI_chr4_1079959_1080044,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1079978_1080044;chr4_1079959_1080044 chr4_1079915_1080044 chr4_1080045_1080072;chr4_1079859_1079914 45.71 53.33 65.52 40.70 NA 50.00 11.11 44.21 50.00 NA 36.36 53.06 48.57 37.84 67.74 57.78 41.86 62.96 33.93 54.10 45.00 NA 60.87 NA 34.62 40.62 52.00 NA NA NA 52.50 NA NA 45.98 39.13 16.00 40.91 NA NA 40.00 NA 45.71 57.14 44.44 NA 37.50 38.46 NA 51.35 12.00 40.91 NA NA NA 47.62 NA 60.71 61.11 K intron_retention CG10139 chr2R + chr2R_10533062_10533118 chr2R_10533061_10533062;chr2R_10533118_10533119 chr2R_10532879_10533061;chr2R_10533119_10533717 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 9.52 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Sec22,I_chrX_700593_700676,RI_chrX_700599_700665 chrX + chrX_700593_700665 chrX_700599_700665 chrX_700666_700765;chrX_700499_700592 1.59 1.92 0.00 1.56 1.89 0.00 2.35 0.00 1.12 0.00 0.00 1.37 2.78 0.00 1.52 4.65 0.00 0.00 0.00 1.06 0.00 0.00 3.75 1.43 2.27 3.85 2.70 5.17 1.72 1.75 1.79 0.00 7.69 3.57 0.00 1.67 2.30 1.89 3.60 0.00 1.85 5.26 0.00 4.08 6.12 0.00 1.59 1.72 1.27 4.41 4.48 0.00 1.61 4.65 1.47 1.45 1.54 0.00 K jcn_only_AA noncoding_13380,RI_chr3L_18858228_18858357 chr3L - chr3L_18857669_18858357 chr3L_18858228_18858357 chr3L_18858358_18858457;chr3L_18857324_18857668 51.31 NA NA NA NA NA NA NA 20.00 NA NA 65.00 NA NA NA NA NA NA NA 55.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 47.62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette sdk,I_chrX_625220_634459,I_chrX_636395_636562 chrX + chrX_631322_634459 chrX_631322_631542;chrX_631699_634459 chrX_631543_631698 chrX_631307_631321;chrX_634460_634559 100.00 100.00 100.00 90.91 NA 100.00 83.33 100.00 100.00 100.00 NA 100.00 NA 100.00 85.71 100.00 100.00 NA 100.00 100.00 NA 88.89 100.00 100.00 NA NA 100.00 100.00 85.71 100.00 100.00 NA 88.89 100.00 100.00 100.00 100.00 100.00 90.00 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 87.50 NA NA NA 100.00 NA NA NA K intron_retention disp,CG2017 chr3R - chr3R_1676481_1676612 chr3R_1676480_1676481;chr3R_1676612_1676613 chr3R_1675416_1676480;chr3R_1676613_1677593 0.00 0.00 0.00 15.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 NA NA NA 0.00 0.00 2.08 0.00 2.90 0.00 5.26 0.00 0.00 0.00 0.00 0.00 2.94 NA 12.50 0.00 0.00 0.00 13.04 0.00 2.86 0.00 3.08 7.41 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 3.70 2.94 0.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention CG11266,RI_chr2L_7033019_7033182,RI_chr2L_7033019_7034180,RI_chr2L_7033019_7034764,I_chr2L_7034274_7034764,I_chr2L_7034274_7035406,RI_chr2L_7034911_7035074,I_chr2L_7051093_7051366 chr2L + chr2L_7033019_7034483 chr2L_7033018_7033019;chr2L_7034483_7034484 chr2L_7032919_7033018;chr2L_7034484_7034693 55.00 NA NA NA NA NA 60.00 69.23 71.43 NA NA 44.00 NA NA NA 36.36 NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA 25.00 NA 50.00 NA NA NA NA NA NA 64.71 NA NA NA NA NA NA NA NA NA K alternative_donor CG7420 chr2L - chr2L_1501037_1501098 chr2L_1501037_1501096 chr2L_1500970_1501036;chr2L_1501099_1501164 100.00 NA 87.50 100.00 NA 100.00 90.00 100.00 92.31 NA NA 90.00 NA NA 100.00 100.00 88.89 NA 100.00 94.12 NA 100.00 100.00 87.50 NA 100.00 87.50 NA 100.00 NA 100.00 100.00 NA 100.00 NA NA NA 100.00 100.00 94.74 100.00 100.00 NA NA 93.75 95.00 90.00 95.00 93.33 100.00 100.00 NA 100.00 100.00 90.91 100.00 100.00 90.00 K cassette Ucp4A chrX + chrX_17739792_17740963 chrX_17739792_17740715;chrX_17740826_17740963 chrX_17740716_17740825 chrX_17739615_17739791;chrX_17740964_17741452 51.72 64.00 50.00 62.50 42.86 47.62 47.83 43.75 57.78 58.82 60.00 75.00 30.77 50.00 44.44 47.83 45.45 59.09 43.75 42.86 55.00 55.56 63.04 52.63 68.18 45.45 42.86 50.00 51.72 55.17 20.63 60.00 48.65 43.48 57.14 34.48 65.00 51.43 50.00 41.18 70.00 52.54 43.75 58.33 55.56 65.71 51.43 47.06 47.73 46.43 52.78 52.00 57.14 64.86 44.00 63.89 55.56 60.00 K mutually_exclusive CG11299,noncoding_8970,I_chr2R_19602423_19609308,I_chr2R_19619053_19619186 chr2R + chr2R_19601642_19609732,chr2R_19610399_19616571 chr2R_19601642_19602188,chr2R_19602423_19616571 chr2R_19609733_19610398 chr2R_19602189_19602422 chr2R_19601628_19601641;chr2R_19616572_19616757 33.33 33.33 NA 80.00 55.56 66.67 NA 0.00 16.67 NA NA 66.67 0.00 50.00 50.00 33.33 NA 0.00 33.33 66.67 NA NA 8.33 0.00 20.00 80.00 0.00 50.00 0.00 33.33 50.00 NA 0.00 NA 50.00 NA 50.00 16.67 50.00 66.67 25.00 28.57 33.33 0.00 0.00 0.00 50.00 50.00 33.33 28.57 25.00 0.00 57.14 20.00 66.67 33.33 33.33 33.33 K alternative_acceptor fal,I_chr3L_19289660_19290145 chr3L + chr3L_19291320_19291381 chr3L_19291320_19291377 chr3L_19290619_19291319;chr3L_19291382_19291573 95.45 100.00 92.31 100.00 88.89 90.00 94.74 91.30 93.55 100.00 91.67 100.00 93.75 100.00 100.00 95.45 100.00 100.00 100.00 96.67 100.00 100.00 94.12 100.00 91.67 100.00 88.24 NA NA NA 95.65 100.00 NA 95.83 100.00 87.50 100.00 100.00 91.67 100.00 88.89 89.66 91.67 91.67 NA 91.67 100.00 100.00 96.30 95.00 100.00 87.50 NA 93.75 88.89 93.75 91.67 90.91 K intron_retention crq,I_chr2L_452737_452797 chr2L - chr2L_449171_449229 chr2L_449170_449171;chr2L_449229_449230 chr2L_448254_449170;chr2L_449230_449320 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8359 chr3R + chr3R_4632302_4632354 chr3R_4632301_4632302;chr3R_4632354_4632355 chr3R_4632014_4632301;chr3R_4632355_4633200 53.33 50.00 NA 30.43 61.54 NA 43.75 82.35 39.29 NA 36.36 53.33 69.57 78.57 42.86 64.29 63.64 30.00 60.00 72.22 50.00 61.54 35.71 NA NA NA 46.15 NA NA NA 36.36 NA NA 56.25 NA NA 30.77 NA 41.67 60.00 NA 57.89 54.55 NA NA NA NA 77.78 72.22 30.43 66.67 NA NA NA 50.00 23.08 NA NA K intron_retention CG11897 chr3R + chr3R_24984070_24984220 chr3R_24984069_24984070;chr3R_24984220_24984221 chr3R_24983872_24984069;chr3R_24984221_24984412 50.00 35.71 34.78 58.33 NA 41.67 48.57 40.00 50.00 29.17 NA 47.83 NA 36.84 43.75 50.00 60.00 NA 41.67 55.00 66.67 56.52 57.69 37.04 51.43 63.64 48.08 35.44 57.69 42.11 50.00 NA 59.62 44.44 32.14 66.67 36.17 50.00 54.84 48.57 50.00 56.67 41.67 41.10 NA 53.33 50.00 59.09 47.62 33.33 44.12 52.17 NA 50.00 40.00 70.00 50.00 50.00 K intron_retention pum,I_chr3R_4898752_4906279,I_chr3R_4989351_5039481 chr3R - chr3R_4897398_4897473 chr3R_4897397_4897398;chr3R_4897473_4897474 chr3R_4897229_4897397;chr3R_4897474_4898751 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG1707,I_chr2R_3281467_3281526 chr2R - chr2R_3283217_3283299 chr2R_3283232_3283299 chr2R_3283300_3283367;chr2R_3283154_3283216 100.00 100.00 99.12 100.00 98.65 100.00 100.00 99.37 100.00 98.67 100.00 98.62 100.00 100.00 99.20 99.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.20 100.00 98.98 98.88 100.00 100.00 99.23 100.00 100.00 98.96 99.05 99.10 99.36 99.64 100.00 100.00 100.00 99.31 99.53 99.59 100.00 100.00 99.29 100.00 100.00 100.00 100.00 99.25 100.00 99.35 100.00 99.75 K alternative_acceptor pgant5,I_chr2L_5079575_5093241 chr2L - chr2L_5092899_5093444 chr2L_5092902_5093444 chr2L_5093445_5093575;chr2L_5092875_5092898 20.00 NA NA NA NA NA 25.00 33.33 11.76 NA NA NA NA 7.69 NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Mtch,E_chr3L_185249_186012,I_chr3L_185367_185925 chr3L + chr3L_185740_185925 chr3L_185865_185925 chr3L_185926_186025;chr3L_185377_185739 96.77 97.95 97.10 93.81 96.10 96.77 98.28 95.08 93.96 96.55 96.67 98.01 93.48 95.56 97.06 90.91 96.72 100.00 96.43 95.18 92.98 92.37 95.37 95.69 95.00 95.35 97.81 98.65 86.92 93.16 98.15 96.34 97.26 96.33 97.37 96.15 97.39 96.72 97.24 96.76 96.45 97.24 91.80 97.89 99.45 99.51 97.63 97.76 97.22 98.19 97.13 97.20 97.87 97.09 92.75 97.41 97.50 98.87 K intron_retention CG8209 chr3L + chr3L_7970371_7970426 chr3L_7970370_7970371;chr3L_7970426_7970427 chr3L_7969768_7970370;chr3L_7970427_7970886 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.29 1.03 0.00 0.00 0.00 2.01 1.10 8.30 0.00 1.26 0.34 0.41 0.00 0.00 1.89 0.00 0.00 0.43 0.43 1.16 0.00 0.00 0.00 0.00 1.20 0.00 1.50 0.00 0.43 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.37 K alternative_donor CG31716,I_chr2L_10397648_10398034 chr2L + chr2L_10398741_10399316 chr2L_10398750_10399316 chr2L_10399317_10399535;chr2L_10398654_10398740 17.89 19.35 28.21 27.91 21.88 15.38 16.39 18.18 17.89 5.56 13.51 15.79 35.90 17.65 18.18 16.67 20.00 16.22 20.00 24.00 22.58 20.00 18.52 23.53 15.38 13.51 17.65 NA 22.22 22.73 22.00 12.50 NA 15.79 15.38 13.33 23.68 14.29 26.32 2.94 25.00 20.24 17.14 17.14 NA 23.81 NA 19.23 16.92 11.11 23.68 13.79 5.88 15.38 25.53 16.67 5.00 18.18 K alternative_donor CG15881,RI_chr3L_19799338_19799394,RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19799338_19799405;chr3L_19798903_19799405 chr3L_19798419_19799405 chr3L_19799406_19799494;chr3L_19798405_19798418 0.00 0.00 11.11 0.00 0.00 0.00 0.00 8.33 0.00 0.00 12.50 0.00 0.00 0.00 12.50 0.00 14.29 0.00 9.09 0.00 14.29 0.00 0.00 10.00 0.00 0.00 20.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.67 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 7.69 0.00 0.00 9.09 0.00 9.09 0.00 0.00 K mutually_exclusive Actn,I_chrX_1922061_1924247,I_chrX_1922784_1923807,I_chrX_1922784_1923873 chrX - chrX_1922061_1923807,chrX_1923960_1924247 chrX_1922061_1922697,chrX_1922784_1924247 chrX_1923808_1923959 chrX_1922698_1922783 chrX_1921968_1922060;chrX_1924248_1924347 92.31 93.94 93.55 86.96 90.91 91.30 50.00 92.11 95.83 90.91 90.00 95.00 100.00 89.47 84.85 91.30 95.00 88.24 92.31 93.33 87.50 95.74 91.67 94.87 92.31 93.55 90.91 100.00 90.91 90.48 82.14 87.50 92.59 87.88 96.00 95.83 95.74 94.74 87.80 91.11 83.33 95.45 93.75 95.12 91.67 92.31 90.48 92.86 95.12 94.87 92.59 92.59 88.46 91.30 90.91 93.75 93.55 92.86 N jcn_only_AD Aldolase,I_chr3R_22083764_22086684 chr3R - chr3R_22082030_22082256;chr3R_22082030_22082575 chr3R_22082030_22082195 chr3R_22081992_22082029 9.62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor Rox8,I_chr3R_19872211_19872659,I_chr3R_19872214_19872630,I_chr3R_19872214_19872636,I_chr3R_19872214_19872838,I_chr3R_19876189_19876240 chr3R - chr3R_19872211_19873540 chr3R_19872214_19873540 chr3R_19873541_19873670;chr3R_19872114_19872210 85.71 NA 90.91 71.43 NA 80.00 90.00 73.33 83.33 NA NA 92.31 70.00 90.91 87.50 66.67 87.50 NA 90.00 78.57 77.78 NA 90.91 NA NA 69.23 100.00 NA 75.00 NA 100.00 NA 85.71 82.35 85.71 100.00 NA NA 88.89 NA NA 81.82 70.00 NA NA 87.50 NA 71.43 85.71 NA NA NA NA NA NA NA NA 91.67 K intron_retention mRpL44 chr3R - chr3R_1296182_1296233 chr3R_1296181_1296182;chr3R_1296233_1296234 chr3R_1295184_1296181;chr3R_1296234_1296319 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 21.05 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG10417,E_chr2R_1248333_1249215,RI_chr2R_1248452_1248523 chr2R - chr2R_1248452_1248523 chr2R_1248471_1248523 chr2R_1248524_1248623;chr2R_1248352_1248451 98.11 97.44 99.09 99.48 95.56 98.46 98.20 97.80 97.13 98.28 98.08 97.86 100.00 100.00 100.00 98.46 95.18 95.38 97.48 100.00 94.83 96.88 94.44 96.15 98.08 98.80 96.61 100.00 95.24 98.59 100.00 99.17 99.21 97.89 100.00 95.89 94.87 100.00 95.00 95.56 97.01 97.97 99.08 94.94 99.10 98.34 100.00 97.64 98.03 98.33 95.31 100.00 98.36 100.00 98.20 98.70 95.70 98.11 N alternative_acceptor CG32138 chr3L + chr3L_14058259_14059498;chr3L_14058259_14058715 chr3L_14058259_14058688 chr3L_14058172_14058258;chr3L_14059499_14060368 4.89 3.40 1.50 6.15 3.47 4.16 3.38 3.65 4.76 5.47 1.53 4.88 8.76 3.86 2.40 4.88 3.85 3.07 5.45 2.89 4.77 12.79 7.25 5.22 7.45 5.50 7.20 10.38 10.42 7.67 4.35 4.89 8.60 2.65 7.59 18.32 5.36 7.22 7.26 6.03 5.81 3.28 4.53 4.86 6.64 6.25 7.64 5.44 2.59 12.08 4.76 5.76 1.40 3.78 3.76 9.06 3.71 3.73 K intron_retention RI_chrX_1954878_1955077,CG4281,CG14054,I_chrX_1962457_1964222 chrX - chrX_1956925_1956979 chrX_1956924_1956925;chrX_1956979_1956980 chrX_1956693_1956924;chrX_1956980_1957395 1.04 0.00 0.00 2.20 0.00 0.00 2.50 2.04 2.72 0.00 0.00 2.61 3.51 3.45 0.00 3.85 0.00 1.27 5.41 0.65 3.33 1.96 0.00 0.70 0.00 0.00 1.04 5.71 5.26 1.59 0.00 0.00 2.41 4.59 0.00 0.00 2.50 1.19 0.65 0.00 0.00 2.94 4.08 0.00 2.41 0.98 1.69 0.00 3.01 1.31 2.80 0.00 0.96 1.00 1.18 0.00 0.00 2.90 K alternative_donor pes chr2L - chr2L_7991620_7994109;chr2L_7991620_7994134 chr2L_7991620_7993840 chr2L_7991358_7991619;chr2L_7994135_7994182 94.90 94.90 93.13 90.69 93.02 94.07 97.35 96.59 95.64 95.38 97.14 90.83 97.12 95.08 92.72 96.31 93.40 91.47 94.96 94.29 95.61 94.31 94.90 94.03 91.53 95.08 93.85 90.80 94.81 96.05 93.83 94.64 98.65 96.86 96.43 97.47 91.30 94.12 91.26 96.52 98.25 93.22 96.33 97.17 88.41 98.61 94.32 98.63 96.84 93.42 94.89 93.04 96.67 96.30 92.90 95.56 95.83 100.00 K intron_retention PH4alphaEFB,I_chr3R_26305150_26309614 chr3R + chr3R_26305503_26309614 chr3R_26305502_26305503;chr3R_26309614_26309615 chr3R_26305315_26305502;chr3R_26309615_26309714 0.00 0.67 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.52 0.00 0.52 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 1.84 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.60 0.33 0.27 1.03 0.87 0.53 0.00 0.80 0.37 0.00 0.00 1.24 0.00 0.00 0.86 0.00 0.66 0.00 0.00 0.68 0.65 0.32 N intron_retention CG2003 chr3R + chr3R_27815253_27815312 chr3R_27815252_27815253;chr3R_27815312_27815313 chr3R_27815109_27815252;chr3R_27815313_27816636 35.71 NA NA NA NA NA NA NA 41.18 NA NA 29.41 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 21.62 NA 35.71 NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor None chrU + chrU_1182323_1183262;chrU_1178980_1183262 chrU_1179335_1183262 92.78 92.80 94.48 89.39 93.41 91.34 89.32 93.04 91.80 93.33 92.96 92.80 89.13 90.34 92.52 92.12 92.36 92.93 92.78 91.80 93.48 91.80 91.49 91.27 94.87 95.54 95.14 88.64 96.51 90.00 95.24 91.55 79.71 91.38 87.06 93.55 93.68 91.46 95.24 94.53 94.52 92.11 91.54 96.41 95.71 94.93 95.93 89.68 91.35 91.86 91.16 90.35 95.00 92.94 94.97 93.75 94.67 91.84 K intron_retention CG12030,Rev1 chr3L + chr3L_656717_656778 chr3L_656716_656717;chr3L_656778_656779 chr3L_656293_656716;chr3L_656779_656832 2.13 2.41 4.05 2.42 2.60 4.05 3.52 5.30 2.65 2.86 1.54 3.62 5.17 5.33 2.22 5.74 3.66 4.41 7.37 1.27 4.00 4.88 1.54 0.00 0.00 1.32 1.35 0.00 0.00 1.28 6.38 0.00 0.00 2.88 3.12 2.74 0.00 0.00 0.00 0.00 0.00 3.45 6.06 0.00 0.00 2.13 0.00 6.45 3.52 0.00 0.81 1.89 0.00 0.00 1.80 0.00 0.00 4.88 K intron_retention CG2061,I_chrX_10986657_10986813 chrX + chrX_10986875_10986991 chrX_10986874_10986875;chrX_10986991_10986992 chrX_10986814_10986874;chrX_10986992_10988697 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 25.00 0.00 0.00 5.88 NA NA 0.00 40.00 NA NA NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA NA NA 0.00 NA K alternative_acceptor gish chr3R + chr3R_12098804_12100306 chr3R_12098804_12100140 chr3R_12098798_12098803;chr3R_12100307_12100597 100.00 100.00 100.00 98.61 95.83 100.00 100.00 98.78 97.52 100.00 100.00 98.65 100.00 97.92 100.00 98.80 100.00 96.67 100.00 98.77 100.00 98.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 94.74 100.00 98.82 100.00 100.00 96.43 100.00 95.45 100.00 96.30 98.67 97.73 100.00 100.00 100.00 96.30 98.48 98.90 100.00 100.00 100.00 100.00 100.00 97.92 100.00 95.83 97.56 K alternative_acceptor CG10737 chr2R + chr2R_15057912_15058122 chr2R_15057912_15057980 chr2R_15057784_15057911;chr2R_15058123_15058183 6.28 NA NA 6.67 NA NA 12.50 6.67 5.26 NA NA 5.26 NA NA NA 6.67 NA NA NA 5.56 NA NA NA NA NA NA NA NA NA NA 5.88 NA NA 5.56 NA NA NA NA NA 15.38 NA 6.67 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention CG33936,RI_chr3R_5183458_5183705 chr3R + chr3R_5183899_5183977 chr3R_5183898_5183899;chr3R_5183977_5183978 chr3R_5183706_5183898;chr3R_5183978_5184293 0.00 0.00 0.00 1.09 0.76 0.00 0.33 0.00 0.45 0.00 0.00 0.00 1.43 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.00 1.53 2.19 0.95 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 N jcn_only_AA Moe,I_chrX_8774434_8791759 chrX - chrX_8774434_8792216;chrX_8791324_8792216 chrX_8785657_8792216 chrX_8792217_8792259 0.00 NA 0.00 0.00 0.00 NA 0.00 2.70 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 4.55 NA NA NA 0.00 NA NA NA K intron_retention CG6330 chr3R - chr3R_22776732_22776793 chr3R_22776731_22776732;chr3R_22776793_22776794 chr3R_22776360_22776731;chr3R_22776794_22777141 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 3.17 1.56 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3558,RI_chr2L_2995071_2997790 chr2L + chr2L_2997531_2997790 chr2L_2997530_2997531;chr2L_2997790_2997791 chr2L_2997492_2997530;chr2L_2997791_2997890 5.88 0.00 7.69 5.00 0.00 5.88 27.27 7.27 7.25 3.85 12.50 6.25 6.52 9.09 8.82 13.16 10.00 7.69 8.33 10.00 5.88 3.03 10.26 2.27 4.17 0.00 9.52 1.96 NA 2.70 8.33 0.00 0.00 8.70 0.00 0.00 9.80 0.00 7.27 7.14 0.00 7.14 0.00 5.56 4.76 2.38 5.88 0.00 9.09 0.00 4.44 0.00 NA 3.70 6.67 0.00 7.41 4.76 K intron_retention CG9776,CG9772 chr3R - chr3R_162131_162190 chr3R_162130_162131;chr3R_162190_162191 chr3R_161731_162130;chr3R_162191_163064 8.14 4.65 6.82 13.46 8.70 13.16 16.22 11.86 13.41 10.00 12.20 13.04 11.36 8.70 22.45 18.00 19.35 16.00 13.16 9.17 8.11 6.58 5.26 2.86 7.69 11.54 8.93 2.94 6.90 0.00 8.00 12.20 7.89 14.93 7.32 14.00 10.91 5.56 4.08 7.22 4.55 11.11 6.25 4.92 3.08 12.31 9.43 7.14 10.14 5.66 7.35 3.92 7.14 5.41 8.93 4.17 2.94 8.14 K jcn_only_AD RpL15 chr3LHet + chr3LHet_2398018_2398127;chr3LHet_2397859_2398127;chr3LHet_2397925_2398127;chr3LHet_2397992_2398127;chr3LHet_2398060_2398127;chr3LHet_2397841_2398127;chr3LHet_2398002_2398127;chr3LHet_2398053_2398127 chr3LHet_2397820_2398127 chr3LHet_2398128_2398454;chr3LHet_2397802_2397819 71.62 40.54 63.89 90.59 50.00 60.87 15.38 87.63 36.62 62.50 65.71 49.12 30.95 37.50 81.03 33.33 85.96 56.36 80.15 52.22 43.59 95.32 53.57 47.83 54.55 79.79 40.74 95.26 86.84 87.50 82.03 92.86 97.27 88.00 95.74 80.23 52.00 NA 30.43 98.87 91.21 83.33 77.53 98.05 92.71 90.52 36.36 96.15 78.37 14.81 38.46 39.13 98.80 43.48 82.91 53.12 47.62 96.77 K intron_retention slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,RI_chr2R_20289332_20289739,I_chr2R_20289332_20289846,I_chr2R_20289332_20290093 chr2R - chr2R_20289332_20289846 chr2R_20289331_20289332;chr2R_20289846_20289847 chr2R_20289232_20289331;chr2R_20289847_20289868 96.29 100.00 97.06 96.61 95.24 94.12 98.44 97.01 91.76 100.00 96.77 95.77 97.67 89.47 90.00 98.75 97.06 96.67 91.49 100.00 96.15 86.67 100.00 95.24 92.00 93.94 100.00 91.67 94.12 100.00 97.30 NA 100.00 98.41 94.74 100.00 100.00 92.31 95.65 95.83 92.86 96.72 95.83 85.00 NA 100.00 94.12 100.00 98.00 92.86 96.43 95.45 87.50 NA 97.62 92.31 100.00 94.12 K intron_retention CG8145,CG11762 chr3R + chr3R_4549084_4549154 chr3R_4549083_4549084;chr3R_4549154_4549155 chr3R_4548945_4549083;chr3R_4549155_4549672 0.00 NA 12.50 9.52 NA 0.00 10.00 0.00 9.09 NA NA 0.00 NA NA 5.26 5.00 0.00 0.00 0.00 7.32 NA NA 0.00 0.00 NA 0.00 25.00 NA 0.00 6.25 10.00 NA NA 0.00 NA 5.56 NA NA NA 0.00 0.00 3.85 NA 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 5.56 0.00 NA NA NA 5.26 0.00 K intron_retention CG16965,escl chr2L + chr2L_11991520_11991574 chr2L_11991519_11991520;chr2L_11991574_11991575 chr2L_11991330_11991519;chr2L_11991575_11991750 11.11 NA NA 28.57 NA NA 0.00 12.50 8.33 NA NA 12.00 NA NA NA NA NA 10.53 NA 16.67 NA NA 29.41 0.00 NA NA NA NA NA NA 17.65 NA NA 0.00 NA 50.00 NA NA 5.56 17.65 NA 0.00 NA NA NA 7.69 NA NA 0.00 NA 11.11 NA NA NA NA NA 12.50 NA K jcn_only_AA tan,R_chr3L_6048520_6048578,R_chr3L_6048608_6048676 chr3L + chr3L_6048520_6048689 chr3L_6048520_6048676 chr3L_6048508_6048519;chr3L_6048690_6048763 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA 96.00 NA 100.00 100.00 NA NA NA NA NA NA NA NA 100.00 K jcn_only_AA Hcs,I_chr3R_1303481_1304607 chr3R + chr3R_1303481_1304625 chr3R_1303481_1304607 chr3R_1303381_1303480;chr3R_1304626_1304707 51.67 NA NA NA NA NA 70.00 NA 45.95 NA NA 40.74 NA NA NA NA NA 64.29 56.52 39.39 NA NA 47.73 60.00 NA NA 39.29 NA NA NA NA NA NA 47.62 NA NA 64.52 56.25 51.35 70.37 NA 43.48 NA 50.00 NA NA NA NA 70.37 NA 59.26 57.14 NA 40.74 36.36 NA 52.00 NA K alternative_donor Reps,I_chr2L_11105525_11105656 chr2L - chr2L_11105525_11105656 chr2L_11105525_11105606 chr2L_11105425_11105524;chr2L_11105657_11105756 100.00 97.30 96.97 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 93.75 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 97.78 100.00 96.43 93.75 100.00 100.00 100.00 100.00 K alternative_donor dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21309092_21310000;chr2L_21309092_21309945;chr2L_21309092_21309579;chr2L_21309092_21309938 chr2L_21309092_21309994 chr2L_21308992_21309091;chr2L_21310001_21310009 4.60 NA 5.26 3.85 6.25 NA 3.85 8.33 10.20 5.56 8.70 5.13 8.33 5.56 4.35 0.00 NA NA 10.00 5.17 11.76 4.35 0.00 4.76 NA 5.56 3.57 0.00 3.12 NA 4.76 0.00 4.44 7.69 0.00 3.33 NA 8.33 3.33 2.38 NA 7.89 NA 0.00 16.67 0.00 NA 0.00 2.38 NA NA 5.88 NA NA 4.17 NA NA NA K intron_retention Gs2 chrX + chrX_11318488_11322561 chrX_11318487_11318488;chrX_11322561_11322562 chrX_11318315_11318487;chrX_11322562_11322902 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 6.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499338_1499771,chr3L_1499880_1501798;chr3L_1499338_1500244,chr3L_1500389_1501798 chr3L_1499338_1501345,chr3L_1501398_1501798 chr3L_1499772_1499879;chr3L_1500245_1500388 chr3L_1501346_1501397 chr3L_1499043_1499337;chr3L_1501799_1501892 20.00 NA 20.00 0.00 NA NA NA 0.00 16.67 16.67 60.00 7.69 NA NA 33.33 9.09 NA NA 0.00 33.33 NA 0.00 22.22 20.00 28.57 0.00 14.29 16.67 NA 60.00 18.18 NA 40.00 0.00 33.33 0.00 NA NA 20.00 33.33 33.33 16.67 NA 25.00 0.00 33.33 NA 44.44 27.27 14.29 33.33 20.00 NA 20.00 25.00 33.33 0.00 20.00 K alternative_donor CG33558,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,EI_chr2R_2820947_2821570,CREI_chr2R_2832933_2850384 chr2R - chr2R_2817876_2818978;chr2R_2817876_2818567 chr2R_2817876_2819347 chr2R_2817851_2817875;chr2R_2819348_2819447 7.14 18.42 3.57 19.44 7.14 0.00 8.33 4.76 5.26 14.81 5.26 12.50 0.00 0.00 3.12 3.70 10.34 6.67 4.55 10.61 4.35 15.79 14.81 19.67 9.68 0.00 8.11 7.69 10.53 6.06 3.33 11.43 3.17 11.43 10.26 2.13 13.25 10.53 11.86 8.14 2.50 12.70 5.00 2.33 6.12 1.49 16.22 1.49 5.77 19.30 9.52 10.71 5.56 15.00 0.00 7.69 5.88 1.96 N cassette CG14995,I_chr3L_4095875_4097205,I_chr3L_4096047_4096903 chr3L - chr3L_4095875_4097506;chr3L_4096979_4097506;chr3L_4096068_4097506 chr3L_4096979_4097205,chr3L_4095875_4097205,chr3L_4096068_4097205;chr3L_4097335_4097506 chr3L_4097206_4097334 chr3L_4095775_4095874;chr3L_4097507_4097804 41.42 43.75 50.00 NA NA NA NA NA 47.06 30.77 50.00 63.16 NA NA 33.33 NA NA NA 25.00 42.86 50.00 70.73 28.57 22.73 57.14 NA 41.18 40.00 42.31 30.77 50.00 47.06 29.03 45.45 35.00 66.67 27.50 23.08 30.43 52.00 45.45 31.82 NA 41.67 47.83 37.50 42.11 23.53 33.33 60.00 39.13 30.00 55.56 41.18 NA 53.33 33.33 37.50 N mutually_exclusive CG42574,I_chr3R_618802_618939,I_chr3R_621543_625413,I_chr3R_621546_625413 chr3R - chr3R_620787_622210,chr3R_623420_625413 chr3R_620787_621458,chr3R_621546_625413 chr3R_622211_623419 chr3R_621459_621545 chr3R_618940_620786;chr3R_625414_625513 66.67 NA NA NA NA 50.00 NA NA 75.00 66.67 NA NA NA NA NA NA NA NA NA NA NA 11.11 83.33 NA NA NA 66.67 16.67 27.27 50.00 NA NA 66.67 NA NA NA 66.67 NA 66.67 85.71 50.00 NA NA 75.00 NA NA NA NA NA NA 66.67 NA NA NA NA NA NA 50.00 K mutually_exclusive ens,I_chr3L_4130719_4131120 chr3L - chr3L_4127163_4128307,chr3L_4128974_4131120;chr3L_4127163_4129650,chr3L_4129789_4131120 chr3L_4127163_4130388,chr3L_4130644_4131120 chr3L_4128308_4128973;chr3L_4129651_4129788 chr3L_4130389_4130643 chr3L_4126989_4127162;chr3L_4131121_4131220 1.19 1.61 2.08 1.30 0.00 0.00 1.75 1.43 0.89 0.00 1.82 1.16 0.00 2.27 1.92 3.23 2.04 0.00 0.00 1.09 2.22 0.92 1.01 1.39 1.64 0.00 1.37 0.00 0.00 1.54 1.59 2.78 1.22 2.53 1.75 2.70 0.87 1.22 0.00 0.89 0.00 0.90 2.38 1.19 0.00 1.85 0.00 1.15 1.18 0.00 1.14 1.67 0.00 0.00 1.85 1.85 0.00 2.17 K alternative_acceptor Arf102F,RI_chr4_1144958_1145393,I_chr4_1152220_1152710,I_chr4_1152585_1152687 chr4 + chr4_1145520_1145587 chr4_1145520_1145575 chr4_1145453_1145519;chr4_1145588_1145637 100.00 100.00 98.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.06 100.00 98.15 100.00 100.00 97.83 97.73 100.00 99.30 97.44 100.00 100.00 100.00 100.00 100.00 97.62 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 99.12 98.15 100.00 97.50 100.00 97.96 100.00 100.00 97.06 100.00 96.43 100.00 100.00 98.33 100.00 100.00 100.00 K intron_retention CG32982,I_chr2L_9127467_9148754,EF_chr2L_9135385_9148841,F_chr2L_9149162_9154658 chr2L + chr2L_9162309_9162362 chr2L_9162308_9162309;chr2L_9162362_9162363 chr2L_9162076_9162308;chr2L_9162363_9162708 98.51 100.00 96.97 100.00 100.00 100.00 98.28 98.31 98.68 97.62 100.00 98.44 95.65 96.67 97.44 100.00 100.00 96.67 100.00 98.81 100.00 100.00 98.94 98.70 100.00 100.00 98.82 96.61 100.00 95.08 98.18 98.04 97.85 98.33 100.00 100.00 98.77 98.08 96.19 95.15 98.65 100.00 100.00 98.72 97.22 96.15 98.86 98.51 98.36 96.90 96.04 95.24 100.00 100.00 97.37 97.22 97.14 98.46 K alternative_acceptor I_chr2L_11009331_11009442,dUTPase,I_chr2L_11011380_11011453 chr2L + chr2L_11011419_11011482;chr2L_11011419_11011479 chr2L_11011419_11011471 chr2L_11011335_11011418;chr2L_11011483_11011553 81.28 81.48 81.36 84.96 87.80 81.19 76.53 87.72 86.89 76.92 64.52 83.67 82.19 76.25 87.10 72.27 80.60 80.00 64.58 88.14 89.69 76.52 76.50 66.08 NA NA 85.13 76.67 65.83 81.63 75.26 63.86 63.79 80.47 76.53 NA 81.86 81.66 81.55 87.58 NA 85.07 80.00 NA 81.55 81.88 81.82 64.91 81.68 87.44 81.77 76.36 75.97 87.65 89.74 76.47 80.00 54.29 K intron_retention CG1427,RI_chr3R_1427548_1427635 chr3R + chr3R_1427548_1427635 chr3R_1427547_1427548;chr3R_1427635_1427636 chr3R_1427482_1427547;chr3R_1427636_1427704 95.83 NA 100.00 92.31 NA 100.00 100.00 90.48 96.00 NA 100.00 100.00 91.67 90.00 90.48 100.00 90.91 90.00 90.91 100.00 91.67 90.91 93.75 93.33 100.00 92.86 100.00 NA 100.00 100.00 87.88 100.00 93.75 94.12 90.00 93.75 100.00 100.00 92.86 100.00 100.00 94.74 100.00 100.00 94.44 94.74 100.00 85.00 95.65 100.00 90.91 87.50 100.00 NA 100.00 100.00 100.00 100.00 K intron_retention CG17273,I_chr3R_16652066_16655997,I_chr3R_16653805_16654088 chr3R - chr3R_16653805_16655997 chr3R_16653804_16653805;chr3R_16655997_16655998 chr3R_16653705_16653804;chr3R_16655998_16656097 0.53 0.00 0.26 1.66 0.00 0.32 0.55 0.62 0.36 0.37 0.32 0.59 0.36 0.83 0.53 1.23 0.00 0.82 0.36 0.68 1.12 1.58 0.61 0.00 0.52 0.00 0.48 1.29 0.90 0.67 0.68 1.08 0.50 0.41 0.63 0.53 0.30 0.16 0.60 0.54 0.58 0.41 0.76 0.15 1.22 0.55 0.00 1.31 0.39 0.50 1.11 0.52 0.00 0.00 0.57 0.60 0.00 0.86 K jcn_only_AA CG7220,RI_chr2R_6619302_6620085,RI_chr2R_6619302_6623271,RI_chr2R_6619302_6623324,chr2R_6619302_6619942.0,RI_chr2R_6624080_6624161 chr2R + chr2R_6619302_6624161;chr2R_6619302_6623324 chr2R_6619302_6620085 chr2R_6619202_6619301 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 2.13 1.96 1.10 1.35 1.77 0.00 0.00 0.00 0.00 0.00 0.00 1.90 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.91 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 K intron_retention 312 chr3L + chr3L_1351790_1351852 chr3L_1351789_1351790;chr3L_1351852_1351853 chr3L_1351529_1351789;chr3L_1351853_1352120 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 3.12 4.76 0.00 3.03 0.00 0.00 0.00 0.00 2.56 0.00 8.33 0.00 0.00 0.00 0.00 3.23 6.82 4.17 4.88 2.94 1.72 0.00 0.00 2.63 4.76 0.00 0.00 2.33 0.00 4.62 0.00 0.00 8.33 2.78 2.53 0.00 1.41 4.26 0.00 0.00 7.41 0.00 0.00 0.00 0.00 1.19 0.60 K jcn_only_AA Sap30 chrX + chrX_16682376_16682599 chrX_16682376_16682572 chrX_16681789_16682375;chrX_16682600_16683675 0.00 0.00 0.00 1.35 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD AnnIX chr3R + chr3R_16891008_16893167;chr3R_16891124_16893167;chr3R_16891033_16893167 chr3R_16891137_16893167 chr3R_16893168_16893221;chr3R_16890951_16891007 10.75 13.85 6.50 7.11 10.48 6.49 14.18 9.12 12.94 2.38 16.27 11.33 13.82 10.05 6.16 11.85 8.05 6.91 9.47 7.27 8.84 15.60 16.67 10.75 20.00 8.08 23.81 24.49 18.75 12.28 6.27 6.10 11.29 7.91 19.67 20.45 13.16 11.94 10.00 4.17 18.87 7.17 9.82 15.38 2.86 7.84 7.48 7.14 7.12 13.95 16.33 19.72 23.73 14.15 9.15 14.14 16.47 6.76 K alternative_donor CG17883,I_chr2R_560147_560511,I_chr2R_560547_560618 chr2R + chr2R_560547_560618;chr2R_560147_560618;chr2R_560565_560618 chr2R_560568_560618 chr2R_560619_560642;chr2R_560047_560146 59.09 65.91 48.98 47.73 64.52 62.16 76.77 61.39 61.67 42.86 41.67 66.67 66.67 52.08 59.57 55.06 56.36 56.10 62.32 57.01 68.97 59.38 58.00 62.22 42.31 44.44 51.06 58.62 33.33 68.42 56.36 72.50 51.52 60.95 60.61 42.11 50.00 72.00 70.97 58.21 41.94 80.00 54.72 59.09 64.86 50.77 62.22 81.25 62.73 52.17 55.10 55.56 64.71 52.78 48.48 62.00 71.88 59.77 K cassette CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8182451_8183188 chr2L_8182451_8182626;chr2L_8182879_8183188 chr2L_8182627_8182878 chr2L_8182351_8182450;chr2L_8183189_8183563 1.80 1.39 1.32 0.00 1.55 0.67 2.70 0.71 1.02 2.82 0.00 2.56 0.90 0.75 1.10 1.63 1.26 0.78 1.31 2.03 0.88 4.76 1.79 3.08 3.12 2.38 1.64 6.32 6.11 2.97 0.63 3.41 3.53 0.89 1.53 9.09 2.26 1.64 2.96 2.49 3.45 1.06 0.82 1.71 4.00 1.95 2.25 1.88 1.24 1.83 1.90 1.08 3.23 2.25 0.56 2.13 1.80 2.74 K intron_retention out chrX - chrX_19207263_19207344 chrX_19207262_19207263;chrX_19207344_19207345 chrX_19205727_19207262;chrX_19207345_19207471 0.00 0.00 0.00 4.35 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA 1.82 0.00 0.00 0.00 NA 1.79 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention CG31705,I_chr2L_11525668_11525916 chr2L - chr2L_11525668_11528120 chr2L_11525667_11525668;chr2L_11528120_11528121 chr2L_11525594_11525667;chr2L_11528121_11528201 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7375 chr3L - chr3L_8190544_8190621 chr3L_8190543_8190544;chr3L_8190621_8190622 chr3L_8190242_8190543;chr3L_8190622_8190802 0.00 0.00 0.00 0.59 0.00 0.00 0.76 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.68 0.00 0.00 1.89 0.00 0.00 0.00 1.75 3.51 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.34 K intron_retention Sh3beta,I_chr3L_7361085_7361784 chr3L - chr3L_7361085_7361162 chr3L_7361084_7361085;chr3L_7361162_7361163 chr3L_7360985_7361084;chr3L_7361163_7361226 0.00 NA NA 16.67 0.00 NA NA 0.00 0.00 NA NA 4.35 NA NA NA 9.09 NA 0.00 NA 6.45 NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 4.35 NA NA NA 0.00 0.00 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention nct,I_chr3R_20679262_20679308 chr3R + chr3R_20680025_20680083 chr3R_20680024_20680025;chr3R_20680083_20680084 chr3R_20679947_20680024;chr3R_20680084_20680151 89.39 88.00 89.83 86.96 93.62 93.48 91.45 89.19 87.58 89.47 97.30 82.31 94.44 92.19 92.06 95.79 95.35 90.91 92.75 86.09 91.49 72.39 97.93 86.24 84.81 98.04 89.38 83.33 87.04 88.24 96.77 83.33 91.49 91.00 90.00 96.77 80.00 86.75 89.29 80.23 95.45 89.39 92.98 87.21 82.61 88.78 84.09 93.75 92.24 87.04 90.76 90.62 84.38 85.06 92.06 87.06 86.82 87.50 K intron_retention HLH106,RI_chr3L_19787260_19787323 chr3L + chr3L_19790359_19790427 chr3L_19790358_19790359;chr3L_19790427_19790428 chr3L_19789559_19790358;chr3L_19790428_19790819 0.00 0.35 0.35 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.10 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.31 0.00 0.00 0.21 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 K jcn_only_AD E(bx),I_chr3L_246324_246699 chr3L - chr3L_246324_246885;chr3L_246324_246408;chr3L_246324_246794;chr3L_246324_246382;chr3L_246324_246388;chr3L_246324_246427 chr3L_246324_246438 chr3L_246224_246323;chr3L_246886_246901 2.04 2.13 1.85 2.60 2.50 2.22 2.56 1.32 1.96 0.00 0.00 0.00 0.00 3.64 4.41 5.49 0.00 2.04 7.14 0.82 2.04 0.00 2.86 0.00 0.00 1.72 1.89 5.41 7.69 6.38 4.41 NA 3.23 2.33 0.00 3.77 0.00 0.00 2.17 2.74 NA 2.47 2.04 0.00 NA NA NA 0.00 3.03 NA 4.23 0.00 NA NA 0.00 NA NA NA K alternative_acceptor Bruce chr3R - chr3R_6141764_6141923 chr3R_6141797_6141923 chr3R_6141924_6143270;chr3R_6141518_6141763 96.88 96.00 97.96 98.68 100.00 94.44 90.91 96.20 96.75 95.83 97.56 96.74 100.00 100.00 96.08 98.36 100.00 95.24 100.00 99.11 97.37 94.37 91.89 93.48 97.50 97.67 94.55 94.87 97.96 95.12 100.00 93.75 98.04 98.59 96.88 97.73 97.22 96.88 97.96 98.41 96.30 96.94 97.50 98.51 82.50 90.24 85.29 96.00 95.83 96.43 92.98 100.00 95.00 95.65 94.64 97.06 96.55 97.30 K intron_retention CG11695,RI_chrX_11473566_11473702,I_chrX_11475074_11475402 chrX + chrX_11472108_11472165 chrX_11472107_11472108;chrX_11472165_11472166 chrX_11471910_11472107;chrX_11472166_11472840 0.85 0.00 0.00 3.57 0.00 2.17 1.67 0.00 0.83 0.00 0.00 3.16 2.63 0.00 3.85 0.00 3.45 0.00 0.00 2.82 0.00 4.88 1.57 1.60 4.29 0.00 1.83 7.89 9.88 1.56 0.00 0.00 2.70 0.00 0.00 1.41 1.71 0.00 2.27 1.32 0.00 2.70 0.00 0.00 0.00 1.12 2.36 0.00 5.00 4.17 2.21 0.00 0.00 2.40 0.00 0.85 0.53 0.00 K jcn_only_AD Tim10,CG42497,I_chr2R_17578506_17578580,I_chr2R_17578506_17578584 chr2R - chr2R_17578506_17578580 chr2R_17578506_17578576 chr2R_17578437_17578505;chr2R_17578581_17578627 98.64 99.14 98.60 98.94 99.35 98.60 99.27 99.29 97.58 100.00 98.76 98.32 98.99 99.42 97.35 99.56 97.84 99.58 96.43 98.51 99.63 100.00 98.19 98.25 97.56 99.43 99.51 97.92 98.02 97.47 99.62 99.60 99.65 98.06 99.28 98.68 98.36 97.96 98.92 99.08 98.08 98.19 98.50 100.00 98.88 98.08 98.50 98.11 98.10 99.24 97.79 97.76 98.07 98.65 98.26 100.00 98.64 99.21 N jcn_only_AD Lag1,RI_chrX_6153758_6153930,I_chrX_6153758_6155077,RI_chrX_6153758_6161036,I_chrX_6160907_6161036 chrX - chrX_6153758_6155077;chrX_6153758_6154631;chrX_6153758_6153930;chrX_6153758_6161036;chrX_6153758_6154193;chrX_6153758_6154358 chrX_6153758_6160439 chrX_6153658_6153757;chrX_6161037_6161136 91.51 95.00 90.24 91.30 93.19 88.39 89.53 84.95 92.18 95.88 91.51 88.64 92.78 89.93 92.50 83.30 92.72 90.95 89.24 92.38 96.65 88.78 95.38 95.49 96.72 90.00 99.35 90.93 85.81 92.72 78.89 90.48 86.82 85.99 93.23 93.94 95.33 95.65 94.14 89.38 89.67 89.20 89.42 93.91 88.16 86.29 94.53 90.91 88.58 93.63 93.52 92.11 100.00 91.10 88.91 94.29 94.57 93.85 K alternative_acceptor Myo31DF,I_chr2L_10506249_10506683,I_chr2L_10506446_10506542 chr2L - chr2L_10506107_10506683 chr2L_10506249_10506683 chr2L_10506684_10506780;chr2L_10505926_10506106 8.12 8.54 9.64 13.27 5.36 7.87 30.12 5.17 8.43 6.41 11.48 2.94 16.98 11.24 5.94 14.84 10.42 7.06 12.35 5.79 10.20 7.91 5.44 6.93 19.30 14.08 14.44 5.30 22.68 5.88 6.25 14.29 11.54 10.94 9.09 12.90 4.59 5.19 4.76 4.97 14.93 8.12 13.70 3.60 4.92 9.47 3.08 9.64 9.15 6.35 7.83 5.26 5.26 5.56 9.71 11.94 4.84 4.44 K intron_retention CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,RI_chr2L_126228_126309 chr2L - chr2L_119077_119133 chr2L_119076_119077;chr2L_119133_119134 chr2L_118931_119076;chr2L_119134_119214 0.00 0.00 0.00 0.93 2.17 0.00 0.00 2.34 0.68 0.00 0.00 3.48 0.00 1.41 2.47 2.78 0.00 0.00 0.93 1.94 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 4.55 0.00 0.00 0.00 1.32 1.75 0.00 0.00 0.00 0.00 0.00 0.00 1.57 3.51 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor noncoding_21514,CG4061,CG4025 chrX + chrX_1966731_1967166 chrX_1966759_1967166 chrX_1967167_1967267;chrX_1966662_1966730 57.73 NA NA NA NA NA NA NA 81.25 NA NA 50.00 50.00 NA NA NA NA NA NA 54.55 NA NA 60.00 NA NA NA NA NA NA NA NA NA NA 69.23 NA NA NA NA NA NA NA 58.33 NA NA NA NA NA NA 57.14 NA NA NA NA NA NA NA NA NA K cassette pgant5,I_chr2L_5074530_5077534,I_chr2L_5075830_5077076,I_chr2L_5079575_5093241 chr2L - chr2L_5074530_5077076;chr2L_5074530_5077534 chr2L_5074530_5075648;chr2L_5075830_5077534,chr2L_5075830_5077076 chr2L_5075649_5075829 chr2L_5074430_5074529;chr2L_5077535_5077634 2.94 1.64 3.57 0.00 1.85 2.00 4.35 2.74 2.08 5.26 0.00 10.94 2.94 4.00 2.44 4.17 0.00 6.00 2.78 3.88 4.44 2.90 1.56 1.82 3.23 2.70 4.41 16.67 4.00 4.17 4.76 5.88 2.78 4.05 2.08 0.00 1.41 0.00 5.00 6.02 4.92 3.16 0.00 1.67 6.78 2.53 0.00 4.30 3.03 2.38 2.94 2.63 3.85 3.23 4.00 3.92 2.38 1.39 K intron_retention CG6659 chrX - chrX_18548774_18548839 chrX_18548773_18548774;chrX_18548839_18548840 chrX_18548580_18548773;chrX_18548840_18550303 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.15 1.83 1.24 1.88 0.00 0.66 0.87 7.69 1.59 1.43 0.00 1.36 0.00 0.00 0.00 0.84 1.05 0.00 1.42 0.00 0.00 0.00 0.45 1.97 1.37 0.00 0.00 0.00 0.42 1.08 0.00 0.00 0.00 0.00 0.00 0.00 1.32 K intron_retention AnnIX chr3R + chr3R_16891008_16893167 chr3R_16891007_16891008;chr3R_16893167_16893168 chr3R_16890951_16891007;chr3R_16893168_16893221 9.33 17.95 6.67 7.39 25.71 7.41 29.67 6.50 21.36 NA 28.00 11.36 27.59 9.33 5.52 14.55 11.11 6.41 5.11 7.87 16.44 33.33 64.29 NA NA 6.35 42.86 NA 23.08 NA 6.29 6.45 0.00 6.52 NA NA 90.00 NA NA 10.42 9.09 8.64 8.08 29.41 2.33 0.00 66.67 6.06 5.52 77.78 52.94 68.75 NA NA 8.53 60.00 NA 0.00 K alternative_donor I_chr3R_25875159_25875219,CG34317,CG7950,noncoding_20085,F_chr3R_25908044_25945850 chr3R + chr3R_25882757_25882861 chr3R_25882806_25882861 chr3R_25882862_25882884;chr3R_25882665_25882756 2.94 0.00 2.13 2.70 6.67 6.12 5.56 3.70 2.00 3.45 5.56 3.64 2.78 3.03 3.57 0.00 3.45 0.00 2.00 2.88 3.45 3.45 2.86 5.71 6.90 0.00 3.33 0.00 6.52 0.00 2.74 2.00 1.92 3.61 6.67 0.00 5.26 4.35 2.94 3.49 4.23 3.90 2.94 0.00 4.62 2.02 0.00 2.94 4.94 0.00 4.08 10.53 0.00 0.00 3.03 2.94 1.56 1.70 K intron_retention Cbl chr3L + chr3L_8420504_8422140 chr3L_8420503_8420504;chr3L_8422140_8422141 chr3L_8420372_8420503;chr3L_8422141_8422345 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 86.49 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 96.55 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG2950,I_chr2L_4844647_4845086,I_chr2L_4844952_4845086 chr2L - chr2L_4846217_4847238 chr2L_4846217_4847163 chr2L_4845642_4846216;chr2L_4847239_4847245 0.00 0.00 0.00 0.00 0.00 0.00 1.79 1.11 0.00 NA 4.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 NA NA NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 1.25 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention lt,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22832742_22832804 chr2L_22832741_22832742;chr2L_22832804_22832805 chr2L_22832624_22832741;chr2L_22832805_22832867 54.55 63.64 45.45 71.43 NA 70.00 39.02 55.00 64.52 NA NA 54.17 90.91 50.00 37.50 76.92 72.73 NA 66.67 69.23 NA NA 55.56 54.55 NA 47.06 68.75 NA 25.00 50.00 43.75 NA NA 65.00 NA NA NA NA NA 46.15 33.33 55.56 62.50 NA NA 31.58 NA 50.00 55.00 NA NA NA NA NA 54.55 25.00 46.67 33.33 K intron_retention CG31301,I_chr3R_11172776_11172930,RI_chr3R_11173123_11173185 chr3R + chr3R_11172875_11172930 chr3R_11172874_11172875;chr3R_11172930_11172931 chr3R_11172810_11172874;chr3R_11172931_11172995 19.67 16.18 21.57 34.43 20.37 17.95 14.06 26.39 27.27 9.09 14.63 19.05 15.79 22.86 34.88 27.12 18.75 28.00 23.53 24.24 23.81 13.56 21.84 18.42 30.00 28.57 37.70 28.33 33.90 17.65 21.21 22.64 17.44 17.81 33.33 29.17 12.61 16.87 19.48 9.35 32.47 22.99 22.22 16.44 20.63 21.95 19.67 17.86 20.79 18.18 17.33 11.48 18.87 19.67 19.23 19.05 13.13 11.72 K alternative_acceptor gcl,I_chr2R_4614277_4614332 chr2R + chr2R_4614277_4614359 chr2R_4614277_4614334 chr2R_4614177_4614276;chr2R_4614360_4614432 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention emc,E_chr3L_750209_752271,RI_chr3L_750228_752277 chr3L + chr3L_750228_752271 chr3L_750227_750228;chr3L_752271_752272 chr3L_750128_750227;chr3L_752272_752371 0.00 0.00 0.00 0.83 0.00 1.47 2.15 0.96 2.82 3.03 0.00 0.54 0.00 0.00 0.00 0.00 1.33 0.00 0.00 1.65 0.00 2.27 0.00 0.66 0.00 0.00 1.15 2.56 0.00 0.00 1.12 0.00 0.00 0.91 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG2478,I_chr2L_20653491_20653552 chr2L - chr2L_20653491_20653552 chr2L_20653499_20653552 chr2L_20653553_20653652;chr2L_20653391_20653490 96.22 100.00 91.18 92.86 96.97 92.59 94.34 98.65 97.80 88.46 100.00 95.65 96.67 96.00 93.75 95.56 97.14 95.00 100.00 100.00 NA 98.55 96.88 87.50 90.48 100.00 100.00 100.00 95.83 95.83 94.74 95.83 96.43 100.00 96.15 95.83 95.00 95.45 NA 94.32 96.43 100.00 96.30 100.00 96.77 92.59 NA 89.36 100.00 100.00 96.00 96.55 NA NA 94.87 NA NA 96.77 K intron_retention CG14777,CG14778 chrX + chrX_1362219_1362283 chrX_1362218_1362219;chrX_1362283_1362284 chrX_1362085_1362218;chrX_1362284_1362415 3.81 6.25 0.00 0.00 0.00 0.00 8.33 8.33 3.77 3.85 NA 10.42 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.56 10.53 0.00 13.33 2.50 20.00 8.70 5.71 0.00 31.25 3.33 3.03 0.00 0.00 0.00 0.00 43.75 7.14 0.00 8.89 5.56 16.67 4.55 0.00 8.11 5.08 2.00 6.67 7.32 4.08 4.35 6.67 NA 0.00 0.00 5.26 6.52 3.85 2.17 K intron_retention CG2811,I_chr2R_20828961_20829772 chr2R - chr2R_20827537_20827594 chr2R_20827536_20827537;chr2R_20827594_20827595 chr2R_20827429_20827536;chr2R_20827595_20827646 0.00 0.00 0.00 5.13 0.00 0.00 3.17 1.41 0.98 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.14 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 2.44 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2816013 chr2R_2813804_2814174;chr2R_2814327_2814894;chr2R_2815657_2816013 chr2R_2814175_2814326;chr2R_2814895_2815656 chr2R_2813704_2813803;chr2R_2816014_2816113 33.33 NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Fbxl4 chrX - chrX_14130973_14131026 chrX_14130972_14130973;chrX_14131026_14131027 chrX_14130879_14130972;chrX_14131027_14131904 10.53 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 16.67 NA 6.67 0.00 NA NA NA 26.67 NA 33.33 NA NA NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor ph-p,I_chrX_2025760_2030488,I_chrX_2025760_2030587 chrX - chrX_2025760_2030498 chrX_2025760_2030049 chrX_2025660_2025759;chrX_2030499_2030588 94.25 100.00 90.00 95.00 100.00 100.00 100.00 94.74 89.29 83.33 87.50 93.75 100.00 92.31 90.00 93.75 100.00 100.00 91.67 95.65 100.00 78.57 93.33 91.67 85.71 100.00 90.00 100.00 85.71 92.31 88.89 80.00 93.33 94.74 100.00 100.00 92.31 88.89 100.00 94.74 100.00 95.00 100.00 100.00 100.00 88.89 100.00 93.33 95.45 100.00 93.75 88.89 85.71 NA 90.00 100.00 100.00 88.89 K intron_retention CG2943 chr3R - chr3R_3731108_3731506 chr3R_3731107_3731108;chr3R_3731506_3731507 chr3R_3730773_3731107;chr3R_3731507_3731819 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention wun,I_chr2R_5291118_5291211,I_chr2R_5297151_5300729,I_chr2R_5297159_5300813 chr2R - chr2R_5290341_5291211 chr2R_5290340_5290341;chr2R_5291211_5291212 chr2R_5290161_5290340;chr2R_5291212_5291311 0.00 0.00 0.00 5.26 3.85 0.00 5.71 0.00 3.03 2.38 NA 0.00 0.00 0.00 0.00 0.00 8.00 0.00 0.00 3.61 0.00 8.62 1.19 2.94 1.47 NA 1.67 3.23 0.00 0.00 0.00 0.00 2.60 2.38 0.00 6.90 4.49 3.51 1.85 1.96 2.63 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 6.25 3.57 0.00 0.00 1.85 0.00 0.00 K jcn_only_AD blp,EI_chr3R_11759655_11759701,Sap47 chr3R + chr3R_11759621_11759721 chr3R_11759655_11759721 chr3R_11759722_11759801;chr3R_11759616_11759620 100.00 97.22 100.00 100.00 100.00 100.00 100.00 98.88 100.00 100.00 100.00 97.87 100.00 100.00 96.36 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 97.83 100.00 100.00 100.00 NA 100.00 100.00 98.44 100.00 98.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 99.15 100.00 100.00 100.00 98.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.41 100.00 K intron_retention CG18473 chr3R + chr3R_5189981_5190038 chr3R_5189980_5189981;chr3R_5190038_5190039 chr3R_5189816_5189980;chr3R_5190039_5190256 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.21 0.70 0.00 0.00 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 K intron_retention CG40191,I_chr2RHet_391475_391828,I_chr2RHet_392279_392824 chr2RHet + chr2RHet_391927_392824 chr2RHet_391926_391927;chr2RHet_392824_392825 chr2RHet_391829_391926;chr2RHet_392825_392923 78.50 NA 100.00 80.00 60.00 72.73 96.15 85.71 78.05 NA NA 82.76 100.00 91.67 63.64 84.85 83.33 66.67 80.00 78.95 NA NA 57.14 88.89 69.23 87.50 77.78 NA 66.67 NA 82.35 NA NA 82.61 NA 75.00 NA NA NA 73.33 59.09 88.00 88.89 66.67 NA 66.67 60.00 88.89 87.88 63.64 61.11 69.23 NA 63.64 84.62 71.43 76.47 93.33 K intron_retention baz,I_chrX_17055225_17069379 chrX + chrX_17087069_17087931 chrX_17087068_17087069;chrX_17087931_17087932 chrX_17086564_17087068;chrX_17087932_17089266 14.29 10.53 14.29 38.89 12.50 NA NA 41.18 16.67 0.00 7.14 23.08 NA NA 13.33 35.71 NA NA 29.41 15.38 25.00 15.79 22.86 9.68 NA NA 18.18 NA NA NA NA NA NA 27.78 NA 7.69 11.76 12.50 5.26 21.05 NA 9.52 NA 4.76 NA NA 14.29 NA 20.83 5.26 13.04 NA NA NA NA NA NA NA K alternative_donor CG12703 chrX + chrX_19645123_19645380;chrX_19645198_19645380;chrX_19645200_19645380;chrX_19645202_19645380;chrX_19645171_19645380 chrX_19644924_19645380 chrX_19645381_19645579;chrX_19644833_19644923 5.41 6.35 3.45 12.79 1.75 8.82 2.13 13.93 8.14 6.00 3.17 4.83 2.13 5.56 3.75 0.00 7.94 11.39 5.88 7.10 3.03 2.78 7.77 10.14 2.04 1.89 7.69 2.50 0.00 7.45 1.15 1.85 0.76 7.38 5.56 1.67 10.71 3.17 9.09 3.25 1.52 5.62 6.15 3.57 5.41 3.26 10.29 0.70 5.70 0.00 8.86 2.17 2.00 8.89 6.90 8.33 10.00 0.89 K alternative_acceptor CG1599,I_chr2R_5729744_5729805 chr2R - chr2R_5729744_5729805;chr2R_5729731_5729805 chr2R_5729673_5729805 chr2R_5729806_5729905;chr2R_5729644_5729672 100.00 100.00 98.63 98.40 100.00 100.00 96.15 98.55 100.00 100.00 96.00 100.00 98.75 100.00 98.97 100.00 100.00 100.00 97.59 97.89 100.00 98.59 98.98 100.00 100.00 100.00 100.00 93.55 97.22 100.00 100.00 100.00 96.55 98.03 100.00 95.83 100.00 100.00 100.00 100.00 96.97 98.60 95.83 100.00 100.00 95.77 100.00 100.00 98.57 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 96.43 K intron_retention CG17574,I_chr2R_8737398_8737465 chr2R - chr2R_8737547_8737603 chr2R_8737546_8737547;chr2R_8737603_8737604 chr2R_8737466_8737546;chr2R_8737604_8737733 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 4.00 NA NA 0.00 NA NA 0.00 NA 5.71 NA 0.00 NA 0.00 0.00 NA 0.00 28.57 16.67 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 NA K jcn_only_AD Ide,I_chr3L_20366301_20366354,I_chr3L_20368443_20368519 chr3L - chr3L_20366301_20366362 chr3L_20366301_20366354 chr3L_20366201_20366300;chr3L_20366363_20366454 0.00 3.85 2.38 3.12 0.00 0.00 1.27 1.22 0.00 NA 0.00 0.00 0.00 0.00 2.17 1.85 0.00 0.00 0.00 1.28 0.00 0.00 2.27 0.00 0.00 0.00 0.00 3.45 3.85 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 1.52 0.00 0.94 0.00 2.04 0.00 0.00 5.26 3.12 1.16 1.43 2.00 0.00 0.00 NA 0.00 0.00 0.00 NA K alternative_last_exon skpA chrX + chrX_550433_551131 chrX_550433_550492 chrX_551132_551981 chrX_550493_550817 chrX_550426_550432 12.50 5.08 8.20 23.53 6.98 6.00 18.97 11.58 7.41 11.11 13.89 10.81 3.51 8.33 7.69 15.00 7.41 25.93 9.52 13.79 10.00 13.33 11.11 4.92 5.88 13.11 35.71 17.65 81.25 18.52 21.62 15.62 12.77 9.33 13.51 50.00 9.38 8.11 9.76 28.12 29.17 10.28 7.89 20.00 20.00 32.35 12.20 30.77 12.96 6.38 12.50 8.82 19.23 8.11 12.50 16.28 12.07 32.08 K alternative_acceptor CG31998,I_chr4_225419_226294 chr4 - chr4_225201_225265 chr4_225219_225265 chr4_225266_225418;chr4_225086_225200 6.67 NA NA 3.12 NA NA 10.00 10.53 7.14 NA NA 9.68 NA 12.50 NA 8.33 NA NA 4.55 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 5.88 NA NA NA NA NA NA NA 3.70 6.67 NA NA NA NA NA 2.94 NA NA NA NA NA 6.67 NA NA NA K jcn_only_AA CG8272,RI_chr2R_4777288_4777363 chr2R - chr2R_4777288_4777363 chr2R_4777301_4777363 chr2R_4777364_4777463;chr2R_4777188_4777287 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 95.83 NA NA 90.91 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA K jcn_only_AA CG5514,RI_chr3R_23768206_23768306,Gp93 chr3R + chr3R_23767856_23768156;chr3R_23767856_23768309 chr3R_23767856_23768306 chr3R_23765429_23767855;chr3R_23768310_23768406 11.28 11.29 3.70 12.07 10.26 9.84 9.62 15.96 10.00 17.14 2.38 9.43 19.51 12.77 14.04 18.33 8.33 8.77 7.94 15.50 7.89 5.56 12.33 15.79 10.17 10.34 10.53 6.12 7.46 2.22 14.52 15.19 11.58 10.39 14.75 11.32 17.28 8.70 10.56 11.38 15.79 12.93 16.28 7.27 8.87 12.84 10.17 9.46 13.04 7.94 14.29 NA 6.82 16.04 11.27 13.33 15.67 14.94 K intron_retention Sop2,CG33649 chr2L - chr2L_13829277_13829345 chr2L_13829276_13829277;chr2L_13829345_13829346 chr2L_13827938_13829276;chr2L_13829346_13829643 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.10 0.00 0.70 0.00 0.21 0.29 0.00 0.00 0.80 1.36 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.16 0.00 0.00 0.18 0.33 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.11 0.00 K intron_retention Ge-1,Reps,I_chr2L_11105525_11105656 chr2L - chr2L_11099296_11099353 chr2L_11099295_11099296;chr2L_11099353_11099354 chr2L_11099042_11099295;chr2L_11099354_11099754 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 4.82 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG7546 chr3L + chr3L_7508878_7508970;chr3L_7508878_7508925 chr3L_7508878_7508967 chr3L_7508741_7508877;chr3L_7508971_7509150 51.22 46.67 50.00 37.21 46.15 44.44 47.50 45.00 57.50 56.67 56.00 56.36 53.85 57.69 55.56 44.83 62.96 53.57 68.42 53.54 44.83 53.66 57.80 50.65 52.27 71.43 49.28 50.00 58.14 44.00 50.00 48.48 47.73 44.19 56.10 55.56 59.18 47.62 51.22 53.12 58.06 50.85 52.94 56.06 47.50 50.00 54.93 48.15 43.33 47.83 58.62 40.48 49.12 47.62 57.69 51.85 58.33 46.67 K alternative_donor CG10565,I_chr3L_21128610_21128680 chr3L - chr3L_21128610_21128717 chr3L_21128610_21128680 chr3L_21128510_21128609;chr3L_21128718_21128780 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.63 0.00 0.66 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention srp,I_chr3R_11826508_11826910 chr3R + chr3R_11812510_11818841 chr3R_11812509_11812510;chr3R_11818841_11818842 chr3R_11811871_11812509;chr3R_11818842_11819172 10.53 NA NA 14.29 NA NA 13.33 10.53 10.53 NA NA 14.29 NA NA NA 5.26 NA 13.33 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 5.56 NA NA NA NA NA 13.33 NA 0.00 NA NA NA NA NA 0.00 5.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD su(f),I_chrXHet_77570_78035 chrXHet + chrXHet_77832_78035;chrXHet_77570_78035 chrXHet_77736_78035 chrXHet_78036_78135;chrXHet_77470_77569 98.13 100.00 99.24 96.27 96.74 98.85 100.00 98.03 98.31 95.45 98.89 100.00 98.77 96.20 98.96 97.44 97.47 98.89 97.25 96.61 99.05 81.36 99.29 97.06 97.94 99.11 100.00 96.23 97.87 96.70 92.45 94.12 98.13 98.58 97.78 98.95 100.00 95.65 98.22 88.89 98.59 97.41 98.65 100.00 98.90 96.97 99.07 94.74 98.79 96.75 98.67 98.57 98.08 97.17 98.35 98.06 98.59 94.87 K intron_retention Nipped-B,I_chr2R_580301_580515,I_chr2R_580453_580515,I_chr2R_580989_582555,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_580301_580358 chr2R_580300_580301;chr2R_580358_580359 chr2R_580236_580300;chr2R_580359_580452 97.37 97.37 93.88 98.86 96.55 100.00 89.09 95.58 96.69 92.86 100.00 96.97 91.67 98.33 92.68 100.00 97.56 97.56 95.65 98.81 97.22 96.55 98.33 97.87 97.44 96.77 94.23 96.77 98.04 98.04 94.38 100.00 98.59 96.61 95.56 100.00 100.00 96.43 96.15 93.94 100.00 100.00 97.73 94.12 97.56 98.72 93.18 99.01 100.00 95.12 96.61 95.56 100.00 100.00 100.00 93.33 95.56 99.02 K multi_cassette unc-13,RI_chr4_892852_895828,RI_chr4_894198_895828,E_chr4_894796_894871,I_chr4_895008_895828,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_892852_895828 chr4_892852_893839;chr4_894198_894260;chr4_894553_894619;chr4_894787_894871;chr4_895094_895828 chr4_893840_894197;chr4_894261_894552;chr4_894620_894786;chr4_894872_895093 chr4_892753_892851;chr4_895829_895928 90.91 95.00 95.83 65.91 94.12 88.00 96.39 83.02 89.06 94.12 93.33 92.45 88.00 85.19 87.10 97.67 90.48 95.45 89.19 97.87 94.12 89.02 87.88 100.00 86.21 81.25 93.18 93.75 57.58 81.48 90.20 90.91 81.82 97.92 84.62 89.74 88.89 91.67 95.45 94.29 87.88 91.11 91.30 87.23 94.44 94.29 90.91 92.31 97.67 86.21 94.59 100.00 76.92 100.00 89.29 79.17 92.31 83.33 K intron_retention slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,I_chr2R_20289332_20290093 chr2R - chr2R_20283699_20283755 chr2R_20283698_20283699;chr2R_20283755_20283756 chr2R_20283566_20283698;chr2R_20283756_20283824 0.00 0.79 0.00 0.65 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 1.55 6.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 1.94 0.00 0.00 0.00 1.05 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CaMKII,I_chr4_1069766_1069812,I_chr4_1071236_1071307,RI_chr4_1071236_1071315,I_chr4_1071489_1071884,RI_chr4_1071489_1071968,I_chr4_1071569_1071884,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1071236_1071884;chr4_1071236_1071813;chr4_1071236_1072054;chr4_1071236_1071319 chr4_1071236_1071968 chr4_1071136_1071235;chr4_1072055_1072059 3.17 NA 3.23 11.24 NA NA 2.00 7.69 4.05 NA NA 2.94 3.85 2.38 0.00 4.27 0.00 NA 7.55 3.92 3.57 0.00 8.70 NA NA NA NA NA 9.09 0.00 8.20 0.00 0.00 10.98 NA 0.00 NA NA NA 3.12 2.86 6.67 5.13 0.00 0.00 0.00 NA 3.51 4.88 NA NA NA NA NA 2.86 NA NA 0.99 K intron_retention eIF-5A,I_chr2R_19945430_19946454,I_chr2R_19945576_19946006,I_chr2R_19945723_19946006,I_chr2R_19945783_19946006,I_chr2R_19945852_19946006,I_chr2R_19945875_19946006,I_chr2R_19945921_19946006,I_chr2R_19946299_19946454,I_chr2R_19946657_19946733,I_chr2R_19948517_19948682 chr2R + chr2R_19945875_19946006 chr2R_19945874_19945875;chr2R_19946006_19946007 chr2R_19945843_19945874;chr2R_19946007_19946106 53.85 NA NA 43.75 NA NA NA NA 53.85 NA NA NA NA NA NA NA NA NA NA 46.67 NA 92.31 NA NA NA NA 50.00 NA NA NA NA NA 41.67 NA NA NA NA NA NA 63.64 NA 60.00 NA NA NA NA 36.36 NA 60.00 NA 63.64 NA NA NA NA NA NA NA K intron_retention boi,I_chrX_2363445_2363896 chrX - chrX_2341631_2344702 chrX_2341630_2341631;chrX_2344702_2344703 chrX_2340923_2341630;chrX_2344703_2344871 0.00 0.00 1.06 1.74 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.81 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention put chr3R - chr3R_10449395_10450921 chr3R_10449394_10449395;chr3R_10450921_10450922 chr3R_10449209_10449394;chr3R_10450922_10451371 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 11.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Mhcl,I_chr3R_11895069_11895448 chr3R - chr3R_11895069_11895584 chr3R_11895068_11895069;chr3R_11895584_11895585 chr3R_11894969_11895068;chr3R_11895585_11895758 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 97.67 95.83 95.65 100.00 100.00 100.00 96.30 95.83 100.00 100.00 100.00 100.00 100.00 97.14 95.45 94.87 100.00 100.00 100.00 100.00 96.15 97.14 98.04 100.00 100.00 97.30 100.00 100.00 96.55 100.00 100.00 100.00 96.97 97.06 100.00 K jcn_only_AA CG30381,RI_chr2R_3817895_3817951,rnh1,RI_chr2R_3819348_3819403 chr2R - chr2R_3818298_3818358 chr2R_3818316_3818358 chr2R_3818359_3818427;chr2R_3818165_3818297 3.23 NA NA 4.35 NA NA 10.00 7.14 6.06 NA NA 0.00 4.76 NA 10.00 15.00 NA 9.52 0.00 7.14 NA NA 0.00 NA NA NA 3.23 NA NA 0.00 8.33 0.00 8.47 4.00 NA NA NA 0.00 0.00 0.00 NA 2.94 0.00 0.00 7.14 0.00 NA 3.23 2.63 0.00 4.55 NA 4.76 NA 2.94 NA NA 0.00 K intron_retention REI_chr3L_3042451_3043440,Jafrac2,I_chr3L_3042851_3043044,I_chr3L_3043202_3043271 chr3L + chr3L_3042451_3043044 chr3L_3042450_3042451;chr3L_3043044_3043045 chr3L_3042396_3042450;chr3L_3043045_3043144 0.00 0.00 0.00 0.00 0.00 0.00 1.45 2.22 0.80 8.33 0.00 0.00 2.27 0.00 0.00 1.30 0.00 0.00 0.00 2.35 0.00 5.26 0.00 0.00 8.70 3.17 6.06 NA 9.09 0.00 2.08 4.76 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.38 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 2.86 0.00 NA 0.00 0.00 2.78 0.00 K jcn_only_AD mys,I_chrX_7958795_7961094 chrX + chrX_7955904_7957872;chrX_7955908_7957872;chrX_7955914_7957872;chrX_7956114_7957872;chrX_7955901_7957872;chrX_7956125_7957872;chrX_7955967_7957872 chrX_7955759_7957872 chrX_7957873_7958492;chrX_7955741_7955758 61.41 48.30 58.11 67.07 76.37 65.69 65.15 73.46 66.02 69.18 63.00 66.60 78.46 62.17 69.60 60.24 71.50 66.52 67.50 70.70 66.37 60.23 40.81 39.89 41.18 66.67 29.94 48.10 61.41 44.75 69.52 64.29 61.65 65.97 42.14 30.19 53.08 50.76 45.15 54.46 49.15 70.91 60.53 58.16 64.37 52.94 39.34 66.92 66.11 37.97 39.18 50.39 50.20 20.69 69.21 35.23 42.25 65.82 K alternative_donor br,I_chrX_1517022_1518170 chrX + chrX_1506837_1518170 chrX_1517022_1518170 chrX_1518171_1518270;chrX_1506737_1506836 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 K intron_retention I_chr2R_4783150_4783708,Ggamma1,noncoding_5300 chr2R + chr2R_4788937_4789641 chr2R_4788936_4788937;chr2R_4789641_4789642 chr2R_4788908_4788936;chr2R_4789642_4789782 100.00 100.00 100.00 95.45 100.00 NA 94.44 100.00 96.00 NA 90.00 100.00 93.33 100.00 100.00 100.00 100.00 90.00 100.00 100.00 NA 100.00 88.89 100.00 NA 100.00 NA NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 92.31 NA 100.00 100.00 93.33 NA 93.33 100.00 NA 100.00 NA 100.00 NA NA 87.50 87.50 100.00 100.00 90.91 K alternative_donor BtbVII,I_chr3L_3150858_3150927,I_chr3L_3151185_3151263 chr3L + chr3L_3149157_3149627;chr3L_3149134_3149627 chr3L_3149161_3149627 chr3L_3149628_3150153;chr3L_3149092_3149133 79.16 NA NA 88.89 NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 NA 83.33 NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814174;chr2R_2814327_2814894;chr2R_2815657_2816013;chr2R_2816342_2817327;chr2R_2817604_2817753 chr2R_2814175_2814326;chr2R_2814895_2815656;chr2R_2816014_2816341;chr2R_2817328_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette nmo,I_chr3L_8010749_8032974 chr3L + chr3L_8040701_8042968 chr3L_8040701_8041169;chr3L_8041544_8042968 chr3L_8041170_8041543 chr3L_8040607_8040700;chr3L_8042969_8043978 63.64 55.56 60.00 56.25 61.54 46.15 41.67 47.83 61.29 61.54 66.67 68.42 71.43 63.64 57.14 61.54 50.00 63.64 66.67 60.00 66.67 80.00 68.18 75.00 58.33 42.86 58.33 41.18 83.33 57.14 53.85 60.00 76.47 65.00 60.00 81.82 71.43 63.64 64.71 69.57 55.56 82.35 100.00 54.17 66.67 53.33 70.00 58.82 65.00 69.23 76.92 85.71 85.71 66.67 61.11 60.00 77.78 58.33 K intron_retention CG12075 chrX + chrX_8761892_8762030 chrX_8761891_8761892;chrX_8762030_8762031 chrX_8761637_8761891;chrX_8762031_8762225 53.85 47.83 63.64 29.41 71.43 71.43 55.00 71.43 50.00 NA NA 56.25 60.00 62.50 50.00 53.85 NA 55.56 50.00 46.88 NA NA 21.05 33.33 NA NA 47.06 NA NA 46.15 76.92 60.00 28.57 50.00 NA 63.64 40.00 33.33 48.28 53.85 NA 54.84 66.67 41.67 38.46 58.82 64.29 53.33 43.33 27.78 57.14 45.45 77.78 73.33 65.00 66.67 50.00 NA K jcn_only_AD CG42595,I_chr2RHet_3137161_3169314,I_chr2RHet_3137489_3169314,R_chr2RHet_3155511_3169164,F_chr2RHet_3155517_3156864,I_chr2RHet_3155517_3174709,F_chr2RHet_3157065_3157177,F_chr2RHet_3157374_3169168,RI_chr2RHet_3175044_3179353,I_chr2RHet_3179481_3179586 chr2RHet - chr2RHet_3155517_3174709 chr2RHet_3155517_3169168 chr2RHet_3155417_3155516 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.43 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 100.00 100.00 99.25 100.00 96.67 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG33090,CEI_chr2L_14342636_14342777 chr2L + chr2L_14341577_14342783 chr2L_14341576_14341577;chr2L_14342783_14342784 chr2L_14341307_14341576;chr2L_14342784_14342877 16.67 9.09 19.05 33.33 14.29 14.29 17.39 13.04 19.35 12.50 NA 17.65 0.00 NA 25.00 17.65 NA NA 18.75 17.65 23.08 13.79 16.67 7.14 NA 25.00 25.00 20.00 15.38 20.83 13.33 NA 11.63 18.18 22.22 17.65 11.11 29.41 14.81 16.67 NA 12.00 7.69 16.00 0.00 18.75 14.29 16.67 16.67 NA 9.09 17.65 NA NA 22.22 16.67 NA NA K intron_retention ssh,I_chr3R_20769244_20770111 chr3R - chr3R_20769244_20770139 chr3R_20769243_20769244;chr3R_20770139_20770140 chr3R_20769144_20769243;chr3R_20770140_20770211 3.92 0.00 0.00 8.33 6.67 0.00 15.00 7.41 9.38 2.70 0.00 8.82 14.29 0.00 0.00 5.26 0.00 18.18 NA 10.87 14.29 33.87 1.92 3.77 9.09 NA 0.00 12.50 7.69 6.90 8.00 8.89 6.06 0.00 3.92 0.00 4.17 0.00 5.00 3.85 3.92 3.51 3.85 3.03 8.06 3.77 0.00 3.85 0.00 0.00 5.71 10.00 0.00 6.67 7.14 0.00 0.00 3.92 K alternative_acceptor NijA chr3L - chr3L_10688468_10688728 chr3L_10688516_10688728 chr3L_10688729_10688804;chr3L_10688432_10688467 63.04 71.88 58.06 55.56 56.25 62.50 68.18 76.09 58.00 41.67 91.67 60.61 46.15 63.16 69.70 77.08 62.07 57.14 69.70 65.22 73.68 37.88 82.98 61.36 60.00 65.22 63.83 59.09 62.07 60.00 60.47 53.19 63.04 61.54 60.71 66.67 47.22 58.62 68.89 53.45 52.54 76.00 65.00 65.00 59.65 70.24 69.23 60.00 70.00 52.63 65.00 62.50 84.38 79.41 70.00 68.42 68.09 74.23 K intron_retention CG13319,RI_chr2R_8812301_8816468 chr2R + chr2R_8811857_8811926 chr2R_8811856_8811857;chr2R_8811926_8811927 chr2R_8811324_8811856;chr2R_8811927_8812157 63.16 NA NA NA NA NA NA NA 50.00 63.64 NA NA NA NA NA NA NA NA NA 90.00 NA NA 71.43 29.41 71.43 88.89 62.50 73.33 82.35 NA 70.00 77.78 58.33 38.46 NA 91.67 39.13 35.71 62.50 60.87 77.78 36.84 NA 53.85 56.25 84.62 63.16 91.67 50.00 35.29 64.29 60.00 65.38 35.71 NA 69.23 48.00 88.46 K jcn_only_AA CG7029 chr3R + chr3R_18614491_18615247 chr3R_18614491_18615214 chr3R_18614301_18614490;chr3R_18615248_18617722 84.85 79.49 81.82 94.81 95.00 70.73 77.08 80.00 91.95 92.11 87.50 81.25 81.82 84.85 86.36 89.74 86.11 87.10 88.89 83.70 97.67 82.11 78.05 79.37 91.53 92.86 88.00 92.00 81.25 91.46 85.37 76.09 94.12 85.23 85.71 86.30 80.60 83.33 79.52 71.43 78.26 89.41 87.80 69.23 72.73 83.87 67.74 85.84 92.31 91.30 72.88 86.67 73.08 86.96 81.48 78.79 55.88 82.28 K alternative_acceptor l(3)05822,I_chr3R_14115739_14115801 chr3R - chr3R_14117222_14123845 chr3R_14117226_14123845 chr3R_14123846_14124586;chr3R_14115802_14117221 100.00 96.67 96.55 100.00 94.44 100.00 97.37 96.88 98.53 100.00 100.00 95.74 100.00 95.45 97.06 100.00 100.00 96.77 96.55 98.28 100.00 97.87 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 95.45 100.00 100.00 96.15 97.06 100.00 94.55 96.55 100.00 100.00 94.74 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 96.00 100.00 100.00 100.00 K jcn_only_AD Akt1 chr3R + chr3R_11926502_11926621;chr3R_11925318_11926621;chr3R_11925014_11926621;chr3R_11925383_11926621 chr3R_11924988_11926621 chr3R_11926622_11926719;chr3R_11924974_11924987 9.52 NA NA 25.00 NA NA 4.00 15.79 14.29 NA NA 11.11 NA NA NA 0.00 NA NA NA 11.54 NA 15.00 0.00 0.00 NA NA 4.55 NA 9.52 NA NA NA 8.82 12.50 NA NA 19.23 NA NA 9.52 NA 12.50 NA NA NA NA NA NA 8.57 NA 0.00 NA NA NA NA NA NA NA K intron_retention lolal,I_chr2R_14043671_14043736,I_chr2R_14043671_14043740,I_chr2R_14043671_14043901,RI_chr2R_14043671_14044082,I_chr2R_14043671_14044191,I_chr2R_14043671_14044461,I_chr2R_14043671_14045289,I_chr2R_14043671_14045344 chr2R - chr2R_14043671_14044461 chr2R_14043670_14043671;chr2R_14044461_14044462 chr2R_14043571_14043670;chr2R_14044462_14044521 100.00 NA NA 100.00 NA NA NA NA 91.67 NA NA 88.89 NA NA NA 100.00 NA NA NA 90.91 NA 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA NA 92.86 NA NA 100.00 NA NA 100.00 NA 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA 100.00 NA K jcn_only_AD PhKgamma,I_chrX_11589428_11589856,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11589297_11589856;chrX_11589418_11589856;chrX_11589313_11589856 chrX_11589428_11589856 chrX_11589857_11589956;chrX_11589195_11589296 2.38 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA NA 3.23 NA NA 8.00 0.00 NA NA NA 6.45 NA 6.25 0.00 4.00 NA 4.76 NA NA 0.00 NA 3.70 NA NA 6.06 NA NA 5.00 0.00 4.35 0.00 NA 0.00 NA 0.00 0.00 NA NA 2.50 2.38 0.00 0.00 4.55 NA NA 8.70 NA 4.76 3.33 K alternative_acceptor CG18213 chr3R - chr3R_12865006_12865068 chr3R_12865009_12865068 chr3R_12865069_12865228;chr3R_12864982_12865005 88.19 NA NA 100.00 NA NA NA 91.67 87.50 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA 87.50 NA 90.00 NA NA NA 88.89 81.82 NA NA NA NA NA NA NA NA NA K jcn_only_AA PR2,I_chr2R_9032197_9036175 chr2R - chr2R_9032194_9036175 chr2R_9035960_9036175 chr2R_9036176_9036275;chr2R_9032097_9032193 4.00 4.92 5.77 22.03 2.44 7.14 10.00 4.29 7.69 3.23 0.00 2.75 0.00 1.89 3.92 15.87 0.00 4.88 2.22 12.26 4.44 1.85 10.45 2.27 6.45 6.45 6.12 21.21 2.56 2.27 4.35 0.00 5.17 5.06 4.00 9.80 9.84 4.17 1.59 2.91 9.30 4.59 7.32 1.89 0.00 1.61 3.77 3.37 6.40 9.09 2.99 7.14 1.67 0.00 3.64 0.00 1.85 1.22 K jcn_only_AD CG14939,RI_chr2L_11812683_11813150 chr2L - chr2L_11812683_11813633;chr2L_11812683_11813724 chr2L_11812683_11813150 chr2L_11812583_11812682;chr2L_11813725_11813792 3.99 5.71 1.59 4.00 0.00 2.38 2.86 4.71 4.32 NA 4.23 1.94 0.00 2.94 5.00 5.71 4.44 4.00 1.61 3.97 2.86 0.00 NA NA NA 5.88 NA NA 4.17 NA 3.17 12.90 6.67 2.68 NA NA 2.38 4.55 0.00 4.55 NA 1.89 4.00 10.00 4.76 NA NA 0.00 3.92 NA NA 11.11 NA NA 3.39 NA 8.70 3.70 K mutually_exclusive I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499338_1499771,chr3L_1499880_1501798;chr3L_1499338_1500244,chr3L_1500389_1501798 chr3L_1499338_1501350,chr3L_1501407_1501798 chr3L_1499772_1499879;chr3L_1500245_1500388 chr3L_1501351_1501406 chr3L_1499043_1499337;chr3L_1501799_1501892 16.67 NA 20.00 0.00 NA NA NA 8.33 9.09 16.67 NA 7.69 NA NA 25.00 0.00 NA NA 12.50 11.11 NA 14.29 36.36 20.00 16.67 12.50 14.29 9.09 NA NA 25.00 NA 40.00 10.00 20.00 0.00 NA 33.33 33.33 40.00 42.86 16.67 NA 25.00 20.00 14.29 40.00 37.50 11.11 25.00 25.00 33.33 NA 0.00 14.29 33.33 0.00 20.00 K jcn_only_AA wge,Irp-1A,I_chr3R_18549791_18549839 chr3R - chr3R_18549774_18549839 chr3R_18549791_18549839 chr3R_18549840_18549939;chr3R_18549691_18549773 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 2.78 1.41 2.86 0.00 0.00 0.00 2.13 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.90 0.00 0.00 0.00 NA 0.00 0.00 3.23 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG8239 chrX + chrX_15643337_15643397 chrX_15643341_15643397 chrX_15643398_15643468;chrX_15643233_15643336 4.45 NA 10.34 NA NA 13.04 4.55 5.41 5.00 NA NA 7.32 NA 4.35 0.00 8.11 NA 0.00 3.70 0.00 NA NA NA 8.70 NA NA 10.00 NA NA NA 12.50 NA NA 0.00 3.70 NA NA NA NA NA NA 2.70 NA 3.33 NA 0.00 NA NA 6.12 NA 3.23 NA NA NA 8.00 0.00 NA NA K alternative_acceptor CG12702,I_chrX_19654440_19654520 chrX - chrX_19654440_19654520 chrX_19654463_19654520 chrX_19654521_19654620;chrX_19654340_19654439 100.00 94.44 100.00 94.12 93.75 92.86 100.00 94.74 96.88 NA 100.00 96.00 100.00 92.86 100.00 94.12 91.67 100.00 100.00 100.00 100.00 100.00 96.00 100.00 93.33 93.33 100.00 100.00 92.31 100.00 93.33 100.00 100.00 100.00 100.00 100.00 96.55 94.12 100.00 100.00 90.91 100.00 92.86 100.00 93.33 100.00 100.00 100.00 100.00 95.24 96.55 94.12 100.00 100.00 94.44 100.00 100.00 100.00 K intron_retention Tequila chr3L + chr3L_9069366_9069418 chr3L_9069365_9069366;chr3L_9069418_9069419 chr3L_9069211_9069365;chr3L_9069419_9069595 0.00 NA 0.00 6.25 NA 0.00 0.00 1.59 0.00 NA NA 0.00 0.00 0.00 0.00 4.55 0.00 NA 0.00 2.04 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K mutually_exclusive Msp-300,I_chr2L_5154189_5154247,I_chr2L_5174808_5176751,I_chr2L_5185965_5188116,snoRNA:Psi28S-2263,I_chr2L_5197634_5197866 chr2L + chr2L_5155850_5187606,chr2L_5187718_5188116 chr2L_5155850_5158454,chr2L_5185965_5188116 chr2L_5187607_5187717 chr2L_5158455_5185964 chr2L_5155589_5155849;chr2L_5188117_5188216 25.00 33.33 20.00 20.00 25.00 20.00 33.33 33.33 7.69 0.00 42.86 20.00 20.00 25.00 50.00 50.00 16.67 25.00 50.00 16.67 20.00 14.29 10.00 28.57 50.00 42.86 25.00 50.00 100.00 25.00 0.00 66.67 25.00 11.11 20.00 50.00 11.11 0.00 20.00 50.00 100.00 12.50 14.29 14.29 100.00 50.00 25.00 50.00 33.33 50.00 14.29 50.00 50.00 50.00 20.00 50.00 66.67 100.00 K intron_retention CG17528,RI_chr2R_706735_711409,I_chr2R_706735_711443,I_chr2R_707374_711443 chr2R - chr2R_706735_706792 chr2R_706734_706735;chr2R_706792_706793 chr2R_706635_706734;chr2R_706793_707373 4.88 8.57 9.30 18.00 0.00 9.76 6.98 5.68 6.31 NA 2.44 4.82 4.35 7.14 5.00 2.47 4.26 0.00 1.49 6.32 0.00 9.09 4.88 2.86 0.00 7.69 14.63 NA 0.00 0.00 5.88 0.00 6.90 5.08 0.00 17.39 3.45 6.25 0.00 2.50 13.04 5.88 6.12 0.00 0.00 10.00 0.00 12.00 4.72 0.00 6.67 0.00 NA NA 3.28 9.09 3.57 6.67 K jcn_only_AD CG17471,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1217104_1217473;chr4_1217104_1217302;chr4_1217104_1217383 chr4_1217104_1217333 chr4_1217009_1217103;chr4_1217474_1217480 30.43 NA NA NA NA NA 30.30 24.32 30.43 NA NA 33.33 25.00 NA NA 39.47 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 51.85 NA NA NA NA NA NA NA 35.48 NA NA NA NA NA NA 29.73 NA NA NA NA NA NA NA NA NA K alternative_acceptor Gpo-1,EI_chr2R_11747445_11747699,I_chr2R_11749758_11750187,I_chr2R_11756325_11756380 chr2R - chr2R_11748259_11750187;chr2R_11748228_11750187 chr2R_11749758_11750187 chr2R_11750188_11750219;chr2R_11748106_11748227 3.39 6.25 6.25 12.50 NA 0.00 5.71 5.00 11.11 0.00 0.00 5.26 7.14 7.69 0.00 13.64 9.09 0.00 7.69 2.78 6.67 3.12 0.00 2.44 0.00 0.00 2.70 0.00 4.00 7.14 4.76 4.35 4.35 8.70 3.70 0.00 3.33 3.12 0.00 1.89 3.45 4.17 10.00 2.38 0.00 2.63 2.63 2.38 7.14 0.00 2.99 3.23 0.00 0.00 6.25 3.85 8.33 6.67 N alternative_donor CG17760 chr2R + chr2R_8513731_8514257;chr2R_8513642_8514257 chr2R_8513482_8514257 chr2R_8514258_8514421;chr2R_8513465_8513481 0.00 0.00 0.00 15.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 N alternative_acceptor kay,noncoding_19957,E_chr3R_25616137_25617114 chr3R + chr3R_25599544_25617114 chr3R_25599544_25599635 chr3R_25598998_25599543;chr3R_25617115_25617214 1.07 0.89 1.27 5.05 1.67 1.10 4.60 2.50 3.12 1.16 2.00 1.76 2.60 2.86 1.89 4.23 3.12 3.08 2.99 1.97 2.38 0.78 0.99 0.58 0.78 2.30 1.06 1.54 0.61 1.07 2.35 0.80 0.93 3.45 1.00 0.98 0.41 0.58 0.41 0.75 0.68 1.59 3.03 0.67 0.00 0.58 0.00 0.65 2.23 0.49 1.17 0.98 0.00 0.00 2.33 0.00 0.00 0.39 K intron_retention Fur2,RI_chrX_16267905_16268958,I_chrX_16270205_16270272,I_chrX_16274795_16274867 chrX + chrX_16274155_16274220 chrX_16274154_16274155;chrX_16274220_16274221 chrX_16273955_16274154;chrX_16274221_16274508 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.71 3.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG18766,I_chr3R_23069667_23070256,I_chr3R_23069667_23070318,RI_chr3R_23069667_23070361,I_chr3R_23069667_23070365 chr3R - chr3R_23069667_23070738;chr3R_23069667_23070732 chr3R_23069667_23070911 chr3R_23069567_23069666;chr3R_23070912_23070951 8.82 1.96 11.11 15.00 11.76 16.98 11.02 9.57 13.94 4.00 12.50 16.10 20.29 9.76 15.07 10.00 8.82 9.23 5.41 8.81 27.59 20.00 6.25 9.80 3.77 7.84 0.00 8.33 11.11 6.00 8.05 16.67 8.82 10.66 5.17 0.00 8.20 2.27 1.96 12.86 4.69 17.60 11.43 9.84 14.29 1.87 7.46 0.00 12.41 5.26 4.82 6.52 7.69 0.00 14.61 5.48 5.33 3.45 K alternative_donor myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_716066_716322;chr4_716066_716482 chr4_716066_716613 chr4_716053_716065;chr4_716614_716661 8.57 0.00 12.50 4.35 NA 14.29 0.00 3.70 8.57 NA 0.00 7.69 0.00 5.26 0.00 8.70 22.22 40.00 21.43 7.14 25.00 NA 14.29 25.00 20.00 25.00 NA NA NA 0.00 10.00 NA NA 8.33 0.00 NA 0.00 NA NA 14.29 NA 10.53 7.69 0.00 NA NA 0.00 0.00 16.67 NA 10.00 16.67 NA NA 28.57 NA NA NA K intron_retention sgg,I_chrX_2529065_2563945,I_chrX_2536127_2563666,I_chrX_2552903_2553180,I_chrX_2563342_2563666,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2540905_2553180 chrX_2540904_2540905;chrX_2553180_2553181 chrX_2540871_2540904;chrX_2553181_2553226 91.67 91.67 NA 88.24 NA NA 94.44 84.21 97.37 NA NA 87.50 90.00 100.00 88.89 96.15 92.86 100.00 92.31 100.00 NA NA 80.00 70.00 NA NA 91.67 NA NA NA 90.91 NA NA 94.12 88.89 NA NA NA NA 92.31 NA 100.00 100.00 91.67 NA NA NA 90.00 84.00 NA 91.67 90.00 NA NA 88.89 NA NA NA N cassette l(3)02640 chr3L + chr3L_1335289_1337270 chr3L_1335289_1335943;chr3L_1336017_1337270 chr3L_1335944_1336016 chr3L_1335041_1335288;chr3L_1337271_1337370 100.00 93.69 100.00 100.00 100.00 100.00 88.84 94.51 96.80 95.45 100.00 100.00 100.00 100.00 100.00 100.00 92.79 92.62 100.00 100.00 100.00 94.41 95.59 93.18 87.23 100.00 86.90 100.00 90.22 100.00 92.90 100.00 100.00 93.87 100.00 88.64 95.05 93.79 92.55 100.00 90.11 97.07 100.00 93.75 100.00 95.52 100.00 100.00 94.91 100.00 93.41 100.00 100.00 100.00 95.77 91.26 100.00 100.00 K intron_retention Shawn_Tyler,RpS10b chrX + chrX_19492107_19492181 chrX_19492106_19492107;chrX_19492181_19492182 chrX_19492047_19492106;chrX_19492182_19492238 9.09 15.38 4.62 4.35 10.42 5.63 50.42 6.16 14.00 9.52 16.28 8.65 7.02 12.24 7.06 8.70 10.64 3.51 4.17 4.90 7.14 14.42 15.15 10.00 25.00 14.29 31.37 37.93 42.59 4.11 4.59 7.46 1.10 5.88 10.26 7.55 9.52 11.43 11.11 10.61 7.69 5.46 9.26 9.09 6.90 6.31 9.43 4.69 5.11 11.32 17.14 15.79 9.68 16.13 5.26 8.20 7.78 2.70 K alternative_acceptor CG3760,CG3770,CG12851 chr2R + chr2R_20826741_20826793;chr2R_20826741_20826799 chr2R_20826741_20826796 chr2R_20826672_20826740;chr2R_20826800_20826860 14.06 7.32 11.11 8.33 19.35 18.42 8.00 18.42 17.46 15.15 15.38 12.90 0.00 13.04 23.53 8.33 24.14 16.00 15.79 13.85 17.24 12.77 17.24 13.24 11.90 14.81 14.29 12.00 18.75 14.29 17.39 13.04 14.29 12.00 18.37 15.79 14.52 8.11 12.33 10.00 11.32 16.88 18.18 11.43 15.22 12.79 14.55 11.86 19.12 12.79 11.94 11.76 11.32 11.67 16.13 14.06 11.84 16.28 K intron_retention akirin,I_chr3L_7363173_7364806,I_chr3L_7363177_7364806,I_chr3L_7363177_7364831,I_chr3L_7363211_7364831,I_chr3L_7363731_7364806,I_chr3L_7364126_7364806,RI_chr3L_7364737_7364806 chr3L + chr3L_7363177_7364831 chr3L_7363176_7363177;chr3L_7364831_7364832 chr3L_7363111_7363176;chr3L_7364832_7364906 100.00 100.00 100.00 100.00 98.59 98.77 99.43 99.45 99.59 97.87 98.80 100.00 100.00 100.00 99.07 100.00 100.00 100.00 100.00 99.58 100.00 100.00 99.36 100.00 100.00 100.00 100.00 100.00 98.41 100.00 100.00 97.06 97.62 99.42 100.00 100.00 99.00 98.67 100.00 99.15 100.00 100.00 100.00 98.60 100.00 98.85 98.80 100.00 99.45 98.82 99.15 100.00 100.00 100.00 99.21 98.75 100.00 98.36 K intron_retention CG11723 chr2L - chr2L_2146814_2146885 chr2L_2146813_2146814;chr2L_2146885_2146886 chr2L_2145423_2146813;chr2L_2146886_2147345 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N cassette CG34394,I_chr2L_3365674_3365965,RI_chr2L_3365677_3365965,I_chr2L_3365701_3365757 chr2L - chr2L_3364941_3367244 chr2L_3364941_3365426;chr2L_3365677_3367244 chr2L_3365427_3365676 chr2L_3364744_3364940;chr2L_3367245_3367719 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG1621,noncoding_4901 chr2R - chr2R_3379387_3379475 chr2R_3379387_3379450 chr2R_3379231_3379386;chr2R_3379476_3379799 100.00 100.00 100.00 100.00 100.00 96.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 NA 100.00 97.83 100.00 NA 100.00 100.00 96.00 94.12 100.00 NA 100.00 100.00 96.97 100.00 95.24 97.96 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 97.30 100.00 100.00 K intron_retention PH4alphaEFB,spdo,I_chr3R_26304468_26304840,I_chr3R_26305150_26309614 chr3R + chr3R_26299951_26304840 chr3R_26299950_26299951;chr3R_26304840_26304841 chr3R_26299756_26299950;chr3R_26304841_26304940 0.00 0.00 0.61 0.00 0.00 0.00 0.46 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Dscam,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3251271_3255892;chr2R_3254472_3255892;chr2R_3253610_3255892;chr2R_3250700_3255892;chr2R_3251854_3255892;chr2R_3252399_3255892;chr2R_3250996_3255892;chr2R_3254133_3255892;chr2R_3252123_3255892;chr2R_3252988_3255892 chr2R_3252685_3255892 chr2R_3255893_3255920 9.26 12.12 5.13 11.90 3.12 9.52 14.81 17.07 10.00 NA NA 15.58 NA 12.50 6.98 3.33 9.52 NA 4.55 13.33 12.50 1.33 7.69 12.82 5.26 6.67 12.24 4.17 6.98 13.95 22.22 NA 5.45 6.52 17.95 3.85 15.15 12.90 4.62 16.42 NA 15.69 10.00 7.69 NA 4.35 29.63 8.82 9.26 5.00 6.82 8.70 NA NA 8.00 4.35 17.39 NA K intron_retention Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_137257_137445 chr4_137256_137257;chr4_137445_137446 chr4_137167_137256;chr4_137446_139127 100.00 100.00 100.00 98.53 100.00 100.00 98.81 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 94.44 100.00 NA 92.86 100.00 100.00 100.00 100.00 98.59 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG14544,I_chr3R_21886081_21886658 chr3R + chr3R_21885984_21886658 chr3R_21886081_21886658 chr3R_21886659_21886758;chr3R_21885981_21885983 0.00 3.12 0.00 5.56 0.00 0.00 0.00 4.55 0.00 0.00 NA 3.03 NA 0.00 4.55 0.00 0.00 21.43 0.00 2.38 0.00 10.53 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 6.25 0.00 0.00 0.00 6.25 4.17 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 1.92 0.00 0.00 1.67 0.00 0.00 1.59 2.56 0.00 0.00 0.00 0.00 K intron_retention RpS7,E_chr3R_26032339_26034298 chr3R - chr3R_26034380_26034638 chr3R_26034379_26034380;chr3R_26034638_26034639 chr3R_26034299_26034379;chr3R_26034639_26034688 3.94 5.36 2.53 0.90 2.73 0.88 5.45 1.03 3.36 4.12 4.71 3.69 2.78 1.12 1.82 4.08 5.41 3.76 2.58 2.22 4.94 8.45 19.64 10.14 17.14 2.96 14.29 9.09 4.61 4.83 5.98 0.83 1.69 0.63 2.60 9.71 13.21 9.76 14.55 1.44 3.90 1.14 4.21 2.97 1.03 3.94 17.02 2.33 3.68 19.05 10.91 12.00 0.77 12.50 1.59 8.89 6.50 1.10 K intron_retention CG32442,Mkrn1 chr3L - chr3L_21522009_21522065 chr3L_21522008_21522009;chr3L_21522065_21522066 chr3L_21521990_21522008;chr3L_21522066_21522185 28.96 NA NA NA NA NA 14.29 NA 31.25 NA NA NA NA NA NA 31.25 NA NA NA 45.45 NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA 26.67 NA NA NA NA NA NA NA 23.53 NA K intron_retention Shawn_Tyler,CG14207,RI_chrX_19502515_19504413,CE_chrX_19503187_19504413 chrX + chrX_19504288_19504413 chrX_19504287_19504288;chrX_19504413_19504414 chrX_19504126_19504287;chrX_19504414_19504495 66.67 66.67 NA 66.67 NA NA 60.00 78.57 63.64 46.15 58.33 66.67 NA 87.50 NA 75.00 NA NA 83.33 75.00 77.78 50.00 71.43 68.75 NA NA 54.55 NA 71.43 66.67 58.33 81.82 73.33 66.67 71.43 66.67 47.06 NA 58.82 76.92 66.67 69.57 NA 70.59 NA 64.71 71.43 60.00 55.56 90.00 58.82 NA NA 72.73 66.67 71.43 63.64 76.92 K intron_retention ps,I_chr3R_5243723_5265067,I_chr3R_5243723_5270765,noncoding_15575,I_chr3R_5245770_5265067,I_chr3R_5245770_5269732,I_chr3R_5258562_5264836,I_chr3R_5262841_5265067,RI_chr3R_5262841_5266402,I_chr3R_5265428_5266402,I_chr3R_5265428_5269732,I_chr3R_5265428_5270765,CG16777,I_chr3R_5269733_5270765 chr3R + chr3R_5243723_5257753 chr3R_5243722_5243723;chr3R_5257753_5257754 chr3R_5243705_5243722;chr3R_5257754_5258205 60.00 NA NA 70.00 NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA 36.84 NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG7110,CR_chr2L_13405706_13410507 chr2L + chr2L_13403356_13403475 chr2L_13403355_13403356;chr2L_13403475_13403476 chr2L_13403224_13403355;chr2L_13403476_13403891 0.00 0.00 0.00 2.78 0.00 NA 0.00 0.00 1.89 0.00 NA 5.13 0.00 0.00 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 5.88 K jcn_only_AA CG17233,I_chr3L_20232803_20232962,RI_chr3L_20232898_20232962 chr3L - chr3L_20232648_20232962;chr3L_20232645_20232962;chr3L_20232711_20232962 chr3L_20232714_20232962 chr3L_20232963_20233016;chr3L_20232147_20232644 63.19 40.62 64.52 81.63 44.00 NA 62.50 61.76 67.80 NA NA 77.78 NA NA 58.06 57.14 61.90 72.73 50.00 73.21 60.00 62.86 74.36 69.05 NA NA 75.00 NA 75.00 71.05 66.67 NA 68.18 51.16 62.96 57.14 76.06 34.48 69.05 62.96 79.17 64.15 60.87 53.12 58.33 68.18 NA 67.44 63.41 95.00 48.72 47.06 86.36 NA 44.44 44.74 63.64 60.00 K intron_retention edl chr2R - chr2R_14555895_14560450 chr2R_14555894_14555895;chr2R_14560450_14560451 chr2R_14555026_14555894;chr2R_14560451_14561098 0.00 0.00 0.00 2.04 0.00 0.00 6.06 3.57 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 5.88 0.00 4.65 0.00 0.00 0.00 3.57 0.00 0.00 0.00 4.76 0.00 NA 0.00 0.00 0.00 0.00 4.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD I_chr2L_6323791_6325172,Gef26,I_chr2L_6330719_6330770,I_chr2L_6330891_6331043 chr2L + chr2L_6330887_6331043 chr2L_6330891_6331043 chr2L_6331044_6331143;chr2L_6330791_6330886 3.45 NA NA NA NA NA 0.00 3.70 7.32 NA NA NA NA NA NA NA NA NA NA 3.85 NA 0.00 0.00 NA NA NA 3.45 NA NA NA NA NA NA 3.85 NA 0.00 NA NA NA 0.00 NA 0.00 NA 3.57 NA 3.57 NA NA 5.13 NA NA NA NA NA NA NA 0.00 NA K jcn_only_AD rhea,I_chr3L_8563622_8564067 chr3L + chr3L_8549072_8554458 chr3L_8549082_8554458 chr3L_8554459_8554717;chr3L_8548854_8549071 4.37 3.23 5.56 4.29 2.56 3.33 5.26 4.44 7.22 2.50 0.00 3.28 12.00 8.57 7.50 5.06 3.85 4.76 3.64 5.88 0.00 5.17 3.80 9.76 3.85 4.17 0.00 2.94 3.70 6.67 7.84 NA 0.00 6.67 6.06 1.92 3.12 10.34 10.42 5.08 NA 3.09 4.76 5.77 NA 10.00 NA 2.33 2.41 NA 0.00 6.67 NA NA 6.35 NA NA 0.00 K jcn_only_AA CG12795,noncoding_704,sec5,Pdsw chr2L + chr2L_3452672_3452739 chr2L_3452672_3452723 chr2L_3452541_3452671;chr2L_3452740_3453039 0.00 0.00 0.00 0.98 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 2.08 1.61 0.00 1.82 0.00 0.00 3.85 0.61 0.00 0.00 1.75 1.19 0.00 1.54 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 K intron_retention HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13164354_13164423 chrX_13164353_13164354;chrX_13164423_13164424 chrX_13164280_13164353;chrX_13164424_13164645 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 K jcn_only_AA CaMKI,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,RI_chr4_467374_467424,RI_chr4_467482_467543,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_467378_467446 chr4_467378_467424 chr4_467354_467377;chr4_467447_467481 1.51 NA NA NA NA NA 4.00 3.70 0.00 NA NA NA 5.00 NA NA 3.03 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 4.55 NA NA 3.33 NA NA NA NA NA 4.76 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention Vha100-1,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24963246_24963305 chr3R_24963245_24963246;chr3R_24963305_24963306 chr3R_24963074_24963245;chr3R_24963306_24963676 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 K alternative_donor lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3955872_3957375;chr2R_3955586_3957375;chr2R_3955517_3957375 chr2R_3955788_3957375 chr2R_3957376_3957784;chr2R_3955509_3955516 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.70 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 K intron_retention psidin,CG4854 chr3R + chr3R_15851386_15851448 chr3R_15851385_15851386;chr3R_15851448_15851449 chr3R_15850102_15851385;chr3R_15851449_15851647 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.82 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.89 0.00 0.00 0.00 1.01 2.70 1.45 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 1.72 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.97 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2813977;chr2R_2814097_2814174;chr2R_2814327_2814894;chr2R_2815654_2816013;chr2R_2816342_2817753 chr2R_2813978_2814096;chr2R_2814175_2814326;chr2R_2814895_2815653;chr2R_2816014_2816341 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27045110 chr3R_27044770_27044771;chr3R_27045110_27045111 chr3R_27044671_27044770;chr3R_27045111_27045127 88.89 NA NA NA NA NA 90.00 NA 100.00 NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA K alternative_donor Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11838972_11839376;chr2R_11838972_11839458 chr2R_11838972_11839411 chr2R_11838888_11838971;chr2R_11839459_11839486 5.26 0.00 11.11 10.00 0.00 14.29 11.11 9.09 6.25 0.00 0.00 5.56 14.29 0.00 0.00 0.00 16.67 0.00 0.00 5.88 0.00 5.26 5.26 0.00 0.00 0.00 0.00 16.67 14.29 0.00 7.14 16.67 16.67 0.00 14.29 14.29 0.00 12.50 0.00 14.29 16.67 6.25 0.00 5.56 0.00 0.00 0.00 0.00 7.69 0.00 11.11 0.00 NA 20.00 7.69 0.00 NA 16.67 K alternative_donor REI_chr3R_10392729_10393060,CG8066,RI_chr3R_10394291_10394385,I_chr3R_10394322_10394381,RI_chr3R_10400799_10401492 chr3R - chr3R_10394322_10394385 chr3R_10394322_10394381 chr3R_10394222_10394321;chr3R_10394386_10394481 0.28 0.27 0.47 0.00 0.00 0.50 0.49 0.00 0.26 0.00 0.54 0.27 0.62 0.00 0.46 0.00 0.00 0.00 0.00 0.19 0.46 0.48 0.00 0.34 0.41 0.56 0.62 0.00 0.33 0.00 0.51 0.00 0.17 0.00 0.00 0.30 0.00 0.32 0.41 0.39 0.35 0.00 0.83 0.51 0.00 0.25 0.23 0.97 0.31 0.37 0.28 0.00 0.58 0.22 0.44 0.52 0.58 0.28 K intron_retention CG17528,I_chr2R_705620_705713,I_chr2R_705649_705720,RI_chr2R_706735_711409,I_chr2R_706735_711443,I_chr2R_707374_711443 chr2R - chr2R_705440_705502 chr2R_705439_705440;chr2R_705502_705503 chr2R_705290_705439;chr2R_705503_705648 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 1.69 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 1.47 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27683694_27690853 chr3R_27683694_27690318;chr3R_27690353_27690853 chr3R_27690319_27690352 chr3R_27683601_27683693;chr3R_27690854_27691047 94.74 100.00 100.00 96.77 94.44 100.00 89.47 96.67 97.06 100.00 100.00 96.97 100.00 100.00 100.00 95.83 NA 94.74 95.45 100.00 100.00 77.27 90.00 87.50 81.25 85.00 95.65 88.89 91.67 91.30 95.24 70.00 95.24 91.67 92.86 60.00 86.67 90.48 100.00 72.73 91.67 96.55 94.12 95.24 90.91 94.74 95.24 94.12 100.00 88.89 92.86 93.75 94.74 94.74 91.30 100.00 92.86 100.00 K intron_retention CG2852,noncoding_8670 chr2R - chr2R_18533551_18533686 chr2R_18533550_18533551;chr2R_18533686_18533687 chr2R_18533426_18533550;chr2R_18533687_18533826 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.20 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.16 0.00 0.00 0.00 0.31 0.00 0.00 0.57 0.00 0.35 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor uzip,I_chr2R_20916008_20916468 chr2R + chr2R_20899732_20900155;chr2R_20899685_20900155 chr2R_20899701_20900155 chr2R_20900156_20900229;chr2R_20899603_20899684 95.00 95.00 100.00 93.10 93.33 91.30 85.00 94.59 97.44 93.33 100.00 94.59 94.44 94.44 95.24 95.00 100.00 95.00 96.67 92.16 100.00 96.15 94.74 100.00 100.00 90.48 90.48 100.00 90.00 100.00 97.14 100.00 95.00 97.67 93.33 92.31 100.00 91.67 92.31 93.10 94.74 95.65 87.50 100.00 94.12 100.00 95.45 93.10 95.12 100.00 100.00 96.43 91.67 100.00 94.12 96.30 100.00 95.24 N jcn_only_AD bchs,I_chr2L_5907926_5908312 chr2L + chr2L_5907288_5908312;chr2L_5907926_5908312 chr2L_5907644_5908312 chr2L_5908313_5908412;chr2L_5907175_5907287 0.00 0.00 18.03 0.00 0.00 0.00 12.00 13.13 9.79 0.00 0.00 11.82 0.00 0.00 13.19 0.00 0.00 0.00 0.00 12.80 0.00 19.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.13 14.14 0.00 0.00 0.00 0.00 0.00 12.38 0.00 13.89 0.00 0.00 0.00 0.00 0.00 8.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.54 K alternative_donor Ilp6,RI_chrX_2226173_2226308,I_chrX_2226173_2226571 chrX - chrX_2226173_2226376;chrX_2226173_2227352;chrX_2226173_2226571 chrX_2226173_2226308 chrX_2226073_2226172;chrX_2227353_2227719 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 3.12 1.16 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG15715,RI_chr3L_15829349_15830356,I_chr3L_15830026_15830356,RI_chr3L_15830030_15830191,RI_chr3L_15830229_15830356 chr3L - chr3L_15829349_15830356 chr3L_15829349_15829879;chr3L_15830030_15830356 chr3L_15829880_15830029 chr3L_15829249_15829348;chr3L_15830357_15830456 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Syx5,fzy chr2L + chr2L_16307390_16307482 chr2L_16307389_16307390;chr2L_16307482_16307483 chr2L_16307380_16307389;chr2L_16307483_16307526 84.78 91.67 81.82 86.21 NA 78.95 87.88 75.00 84.78 NA NA 84.38 93.33 94.74 76.00 81.82 78.26 83.33 85.19 75.68 63.64 77.78 100.00 100.00 NA 100.00 90.91 87.50 95.12 85.71 77.78 75.00 72.92 76.67 76.92 95.83 NA NA NA 75.68 85.71 72.73 90.00 90.91 84.00 80.95 100.00 84.91 77.55 NA 90.00 90.91 63.64 100.00 71.43 100.00 87.50 78.46 K intron_retention CG6686 chr2L - chr2L_11984951_11985006 chr2L_11984950_11984951;chr2L_11985006_11985007 chr2L_11984725_11984950;chr2L_11985007_11985771 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 4.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14647 chr3R + chr3R_226861_227075 chr3R_226860_226861;chr3R_227075_227076 chr3R_226212_226860;chr3R_227076_227207 2.72 0.00 1.69 8.89 0.00 0.00 2.82 5.88 1.03 0.00 0.00 5.06 4.65 1.96 3.17 0.00 0.00 0.00 4.84 2.72 3.77 8.47 0.00 4.65 7.41 0.00 3.77 2.56 3.41 3.39 3.12 2.27 4.00 2.56 0.00 3.85 4.65 0.00 1.37 4.81 4.40 4.26 2.27 4.23 1.15 4.08 5.41 0.00 3.12 4.65 0.00 0.00 6.67 0.00 0.00 6.12 0.00 1.69 K alternative_donor CG1951 chr3R + chr3R_24853173_24853258 chr3R_24853192_24853258 chr3R_24853259_24853858;chr3R_24852969_24853172 100.00 100.00 100.00 98.08 100.00 100.00 100.00 97.78 100.00 100.00 96.67 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 98.90 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 97.87 100.00 100.00 95.95 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 97.14 100.00 97.06 98.15 96.30 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 K jcn_only_AA CG1109,CG1347 chr3R + chr3R_1486548_1486646 chr3R_1486548_1486633 chr3R_1486391_1486547;chr3R_1486647_1486970 100.00 96.30 NA 100.00 NA 100.00 92.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 96.67 NA 95.45 NA 96.55 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 96.88 100.00 100.00 92.73 100.00 100.00 98.25 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 97.78 95.45 100.00 100.00 100.00 94.87 96.67 100.00 K intron_retention CG8029,I_chr2R_5095165_5095256 chr2R + chr2R_5095165_5095256 chr2R_5095164_5095165;chr2R_5095256_5095257 chr2R_5095083_5095164;chr2R_5095257_5095264 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 100.00 96.67 100.00 100.00 NA 100.00 NA NA 100.00 NA 100.00 NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 NA 100.00 NA NA 88.89 92.31 NA NA NA K alternative_donor CG18317,RI_chr2L_1718492_1723881 chr2L - chr2L_1718492_1718739;chr2L_1718492_1718695 chr2L_1718492_1718674 chr2L_1718421_1718491;chr2L_1718740_1718903 57.29 47.62 51.28 55.26 65.22 66.67 63.64 52.17 55.88 71.43 62.50 60.56 61.54 77.27 55.88 56.52 69.57 83.33 63.89 49.02 50.00 43.28 58.06 55.32 67.65 62.96 61.90 54.93 51.72 53.45 60.53 47.46 50.00 57.41 46.67 48.00 65.82 60.47 62.34 12.98 56.86 58.11 65.00 53.42 57.81 56.45 56.82 57.34 54.69 43.59 54.90 57.14 61.76 58.82 59.46 53.49 61.11 57.29 N alternative_acceptor MAPk-Ak2,RI_chrX_5655618_5656137,I_chrX_5656715_5657427,I_chrX_5656715_5657893,I_chrX_5656715_5657974 chrX - chrX_5656678_5658126 chrX_5656715_5658126 chrX_5658127_5658138;chrX_5656615_5656677 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor eIF-1A,I_chr3R_14106104_14107415,I_chr3R_14106955_14107415 chr3R + chr3R_14100864_14107415;chr3R_14106955_14107415 chr3R_14106104_14107415 chr3R_14107416_14107515;chr3R_14100759_14100863 0.00 0.00 0.00 0.28 0.00 0.00 0.16 0.00 0.11 0.00 0.00 0.12 0.00 0.25 0.19 0.18 0.00 0.00 0.20 0.11 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 K alternative_acceptor CG17471,RI_chr4_1213397_1214333,RI_chr4_1213397_1216053,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1213289_1213331;chr4_1213275_1213331 chr4_1213279_1213331 chr4_1213332_1213341;chr4_1213122_1213274 94.59 94.12 92.86 84.62 NA 90.91 94.74 89.19 92.86 NA NA 86.67 94.44 100.00 100.00 93.62 100.00 90.91 100.00 96.97 NA NA 84.62 95.00 90.91 85.71 93.75 NA NA 100.00 100.00 100.00 91.67 97.06 94.44 88.89 100.00 88.89 92.86 87.50 100.00 96.55 92.86 100.00 100.00 94.29 96.00 80.00 97.44 95.45 96.30 100.00 92.31 95.45 100.00 95.65 100.00 93.10 K jcn_only_AD CG32795,I_chrX_2677459_2682526,I_chrX_2677729_2677799,I_chrX_2679163_2681784 chrX - chrX_2683412_2683778 chrX_2683412_2683741 chrX_2683271_2683411;chrX_2683779_2683818 2.44 NA NA NA NA NA NA NA 2.00 NA NA 4.55 NA NA NA NA NA NA NA 2.44 NA NA NA NA NA NA NA NA NA NA NA NA 5.00 0.00 NA NA NA NA NA NA NA 3.85 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD cype chr2L + chr2L_5327287_5327502 chr2L_5327351_5327502 chr2L_5327503_5327676;chr2L_5327227_5327286 6.78 5.98 6.65 6.41 2.46 5.31 7.76 5.97 6.14 8.94 6.25 3.57 6.78 4.64 3.65 5.93 5.06 7.39 5.59 4.32 5.36 14.29 7.92 8.78 6.06 3.04 22.95 16.67 22.06 18.60 2.76 9.15 16.22 3.19 22.22 26.32 7.69 3.65 9.41 6.12 19.23 3.40 5.54 17.71 4.92 12.38 16.03 10.42 4.27 16.67 11.88 7.41 5.85 14.93 3.54 14.69 13.88 11.94 K intron_retention XNP,Dhap-at chr3R - chr3R_21308106_21308425 chr3R_21308105_21308106;chr3R_21308425_21308426 chr3R_21306108_21308105;chr3R_21308426_21308562 10.00 5.13 10.87 17.86 18.52 13.16 12.90 14.04 11.54 5.17 12.90 8.82 14.29 15.38 9.30 19.64 12.50 8.33 16.67 9.47 12.00 12.50 7.69 10.81 4.00 16.00 12.77 5.56 8.33 5.26 11.11 8.33 4.82 15.38 4.65 12.50 9.09 9.52 7.55 5.84 9.52 10.71 13.04 6.67 4.17 0.00 10.00 4.92 13.89 11.11 15.00 7.69 3.85 12.50 16.67 0.00 7.69 0.00 K jcn_only_AA Zn72D,RF_chr3L_16100887_16102721,I_chr3L_16105199_16105253 chr3L - chr3L_16104982_16105097 chr3L_16105015_16105097 chr3L_16105098_16105198;chr3L_16103583_16104981 1.83 2.22 5.26 3.12 0.00 4.92 0.00 1.23 1.39 0.00 0.00 1.04 0.00 3.70 0.00 1.23 0.00 3.12 7.14 1.53 7.69 2.35 1.59 0.88 7.14 4.00 4.84 0.00 8.47 1.45 1.96 2.50 5.66 1.09 0.00 1.64 1.83 5.56 1.16 1.02 0.00 3.57 2.38 2.04 8.82 2.86 4.69 0.00 6.73 3.45 0.00 0.00 2.13 2.38 3.12 1.35 1.82 0.00 K cassette CG2316,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_213991,RI_chr4_210688_214450 chr4 - chr4_209150_210623 chr4_209150_209203;chr4_209369_210623 chr4_209204_209368 chr4_209051_209149;chr4_210624_210636 97.73 100.00 97.44 91.67 100.00 97.30 98.55 96.47 98.96 100.00 100.00 97.40 100.00 100.00 100.00 98.48 100.00 96.15 100.00 100.00 95.83 92.31 92.86 100.00 100.00 92.59 100.00 100.00 100.00 94.74 97.73 90.91 91.67 98.67 96.97 92.86 100.00 95.00 93.75 97.30 100.00 98.41 100.00 94.12 88.89 92.59 94.12 96.43 98.67 100.00 97.14 100.00 100.00 100.00 97.56 93.75 95.45 96.43 K intron_retention CG7979 chr3L + chr3L_8175796_8176582 chr3L_8175795_8175796;chr3L_8176582_8176583 chr3L_8175320_8175795;chr3L_8176583_8176651 100.00 92.31 100.00 100.00 100.00 90.91 86.67 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 96.97 100.00 92.86 100.00 93.75 88.89 92.31 100.00 100.00 95.00 100.00 94.44 95.00 94.44 95.83 100.00 100.00 88.89 88.89 100.00 96.00 100.00 100.00 92.86 100.00 95.65 97.22 100.00 100.00 96.43 100.00 89.47 92.31 100.00 100.00 95.45 100.00 100.00 100.00 K intron_retention Crag,I_chrX_8494280_8494352 chrX + chrX_8494023_8494094 chrX_8494022_8494023;chrX_8494094_8494095 chrX_8493561_8494022;chrX_8494095_8494279 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention msps,I_chr3R_11877071_11877796 chr3R + chr3R_11883488_11883568 chr3R_11883487_11883488;chr3R_11883568_11883569 chr3R_11883274_11883487;chr3R_11883569_11883687 100.00 100.00 99.05 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.91 100.00 99.07 100.00 98.88 100.00 100.00 100.00 99.42 99.26 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.53 100.00 99.19 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.07 100.00 100.00 100.00 K jcn_only_AA CG30122,I_chr2R_14523798_14523844,I_chr2R_14526123_14526189 chr2R - chr2R_14523777_14523844 chr2R_14523798_14523844 chr2R_14523845_14523944;chr2R_14523698_14523776 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.41 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.50 1.01 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 K intron_retention CG31523,E_chr3R_293837_293935,I_chr3R_294322_304799,RI_chr3R_298911_304354 chr3R - chr3R_293729_293787 chr3R_293728_293729;chr3R_293787_293788 chr3R_293566_293728;chr3R_293788_293836 2.67 2.03 4.04 1.79 4.48 3.19 5.12 2.24 1.52 2.76 4.94 1.85 2.03 2.62 3.96 1.93 1.64 2.79 1.69 2.67 4.94 5.51 2.96 2.80 10.95 13.14 2.52 2.70 7.17 2.04 10.34 1.44 1.23 3.02 3.32 11.11 1.94 1.41 2.44 4.38 8.39 2.70 1.24 2.30 1.77 2.15 1.72 2.67 2.46 2.84 3.31 2.88 4.73 1.99 3.53 2.45 2.32 1.33 K jcn_only_AA Spf45 chr2L - chr2L_22960834_22960931 chr2L_22960877_22960931 chr2L_22960932_22961115;chr2L_22959877_22960833 85.34 86.67 89.16 89.57 89.13 85.88 92.68 84.00 88.30 87.50 85.37 93.60 78.46 84.88 90.11 83.51 83.02 91.53 90.00 85.45 94.00 89.77 75.38 76.60 85.25 94.05 79.05 86.21 84.31 77.78 64.29 85.00 83.33 90.64 79.75 97.40 86.00 88.71 87.67 86.49 77.50 86.78 88.16 83.76 77.78 82.76 83.67 78.95 85.34 82.95 87.41 82.86 80.25 80.00 84.40 86.41 83.62 76.09 K intron_retention mei-P26 chrX + chrX_9057432_9059714 chrX_9057431_9057432;chrX_9059714_9059715 chrX_9057404_9057431;chrX_9059715_9060492 7.88 NA NA NA NA NA 53.33 NA NA NA NA 13.33 NA NA 6.25 0.00 NA NA NA 10.53 NA NA NA NA NA NA NA NA NA NA NA NA NA 9.52 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 6.25 NA NA NA NA NA NA NA NA NA K intron_retention CG7289 chr2L + chr2L_1982499_1982546 chr2L_1982498_1982499;chr2L_1982546_1982547 chr2L_1982235_1982498;chr2L_1982547_1983960 1.92 1.18 0.00 1.90 0.00 0.00 1.80 6.02 3.33 0.00 0.00 5.49 0.00 0.00 4.17 3.30 0.00 3.17 0.00 0.00 0.00 26.32 2.00 2.15 2.00 1.67 5.81 7.81 24.00 0.00 0.00 9.38 4.62 4.00 0.00 1.85 1.92 3.70 1.23 4.55 2.60 2.94 0.00 0.00 6.90 2.56 3.70 10.00 2.80 0.00 2.11 3.28 0.00 0.00 1.64 0.00 0.00 2.04 K jcn_only_AA CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042891_5042960;chr2L_5042885_5042960 chr2L_5042888_5042960 chr2L_5042961_5043016;chr2L_5042835_5042884 13.49 10.53 11.83 18.56 3.85 12.16 10.62 13.49 13.07 17.33 8.51 13.41 7.41 14.63 21.79 9.70 10.53 7.25 16.98 14.49 20.75 7.62 12.82 20.87 15.79 11.54 15.79 10.98 13.64 17.27 12.38 11.29 17.65 17.61 11.65 13.79 10.84 14.71 10.62 12.84 15.56 19.18 8.20 9.66 8.27 13.74 15.69 10.15 12.00 15.19 17.56 19.40 18.52 16.88 9.89 15.69 17.27 17.91 K intron_retention CG7770,I_chr3L_19916995_19917092 chr3L + chr3L_19916995_19917081 chr3L_19916994_19916995;chr3L_19917081_19917082 chr3L_19916927_19916994;chr3L_19917082_19917157 0.00 0.00 1.19 0.77 0.00 0.00 0.43 0.50 0.57 0.00 0.70 0.38 0.77 0.00 0.00 0.84 0.00 0.00 0.61 0.84 0.00 0.00 0.00 0.00 1.06 0.00 1.58 0.88 0.00 0.00 0.00 0.86 0.00 0.43 0.00 0.91 0.00 0.57 0.00 0.00 0.00 0.65 0.00 0.00 1.43 0.00 1.20 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 1.14 K intron_retention CycG,I_chr3R_27427946_27436602,I_chr3R_27427953_27429034,I_chr3R_27427953_27431334,RE_chr3R_27427953_27436598 chr3R - chr3R_27427721_27436610 chr3R_27427720_27427721;chr3R_27436610_27436611 chr3R_27427138_27427720;chr3R_27436611_27436698 100.00 100.00 100.00 99.81 100.00 100.00 100.00 99.80 100.00 100.00 100.00 100.00 100.00 100.00 99.74 100.00 100.00 99.64 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.69 100.00 100.00 K multi_cassette CG40263,F_chr2RHet_1265687_1293040,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1265687_1293055 chr2RHet_1265687_1286305;chr2RHet_1286572_1292103;chr2RHet_1292187_1293055 chr2RHet_1286306_1286571;chr2RHet_1292104_1292186 chr2RHet_1265587_1265686;chr2RHet_1293056_1293121 75.00 90.00 57.14 100.00 55.56 87.50 75.00 85.71 78.26 NA NA 73.33 28.57 55.56 62.50 76.92 62.50 75.00 100.00 82.35 NA NA 77.78 66.67 NA 80.00 66.67 NA NA 85.71 92.86 NA NA 68.75 75.00 NA 100.00 80.00 62.50 37.50 NA 75.00 61.54 71.43 NA 66.67 100.00 NA 57.14 NA 66.67 66.67 83.33 85.71 54.55 85.71 75.00 NA K jcn_only_AD sti,REI_chr3L_12506503_12506561 chr3L - chr3L_12506503_12506573 chr3L_12506503_12506561 chr3L_12506403_12506502;chr3L_12506574_12506661 22.06 15.22 17.11 18.28 22.73 28.85 25.32 26.53 19.51 21.43 16.00 16.67 18.00 17.19 42.42 16.67 21.57 19.61 31.58 21.21 19.64 34.69 26.80 33.80 22.95 29.41 17.39 25.81 6.06 23.91 30.19 NA 20.93 21.82 16.13 16.13 11.27 16.00 24.14 23.38 22.73 22.30 28.21 35.90 30.00 28.57 18.18 20.00 18.38 20.69 17.57 36.36 28.57 27.59 17.11 22.86 41.67 35.71 K alternative_donor CG8920 chr2R + chr2R_16208192_16209182 chr2R_16208194_16209182 chr2R_16209183_16209405;chr2R_16208123_16208191 100.00 100.00 94.74 94.12 100.00 100.00 100.00 100.00 97.22 100.00 100.00 96.15 100.00 88.89 100.00 94.44 100.00 100.00 100.00 100.00 100.00 95.45 100.00 95.00 94.44 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 90.91 100.00 92.31 100.00 100.00 100.00 93.75 95.45 96.00 92.31 96.55 100.00 NA 90.00 100.00 100.00 100.00 100.00 K cassette Mapmodulin,I_chr2R_13756314_13756571 chr2R - chr2R_13755065_13755791 chr2R_13755065_13755287;chr2R_13755594_13755791 chr2R_13755288_13755593 chr2R_13754831_13755064;chr2R_13755792_13755874 1.53 1.54 1.43 0.53 2.00 1.38 2.55 1.03 1.55 2.92 4.95 1.39 2.53 1.87 1.11 1.53 3.25 1.40 2.03 1.10 3.85 0.58 1.20 1.47 1.80 2.13 2.86 4.09 1.10 0.78 2.26 1.04 0.25 2.12 1.03 0.44 1.07 1.32 0.83 1.58 1.07 1.45 1.73 2.78 1.62 1.30 2.01 1.04 2.29 1.94 1.53 1.53 0.45 0.97 2.35 1.67 1.10 0.75 K intron_retention Spase12 chr3R - chr3R_25316679_25316736 chr3R_25316678_25316679;chr3R_25316736_25316737 chr3R_25316532_25316678;chr3R_25316737_25316842 0.31 0.00 0.00 0.00 0.00 0.00 0.46 0.53 0.29 0.48 0.38 0.57 0.63 0.80 0.00 1.16 0.00 0.00 0.00 0.65 0.00 5.26 0.63 0.00 0.00 0.36 1.46 2.86 2.25 0.55 0.31 0.00 0.00 0.51 0.90 0.00 0.44 0.00 0.00 0.46 0.00 0.00 0.97 0.00 1.54 1.26 0.00 5.81 0.00 0.38 0.00 0.00 0.55 0.24 0.00 1.45 0.00 1.09 K alternative_acceptor fra chr2R + chr2R_8445281_8445922;chr2R_8445281_8445949 chr2R_8445281_8446375 chr2R_8445263_8445280;chr2R_8446376_8446583 5.16 20.00 9.09 11.11 0.00 16.67 0.00 7.14 0.00 10.00 0.00 8.33 0.00 0.00 0.00 10.00 12.50 12.50 0.00 5.56 0.00 0.00 5.56 0.00 0.00 0.00 11.11 0.00 0.00 9.09 0.00 20.00 6.25 0.00 10.00 0.00 20.00 0.00 0.00 5.88 0.00 5.88 14.29 9.09 20.00 0.00 0.00 4.76 0.00 20.00 11.76 0.00 0.00 33.33 10.00 14.29 NA 0.00 K intron_retention Nca,CG7646 chr3L + chr3L_19988052_19988473 chr3L_19988051_19988052;chr3L_19988473_19988474 chr3L_19988017_19988051;chr3L_19988474_19988523 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 5.56 NA NA NA NA NA NA NA NA NA NA 7.69 NA NA 6.67 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG1599,I_chr2R_5729744_5729805 chr2R - chr2R_5729744_5729805;chr2R_5729731_5729805 chr2R_5729673_5729805 chr2R_5729806_5729905;chr2R_5729644_5729672 98.53 100.00 99.00 97.14 96.77 98.85 93.48 98.43 98.86 97.22 92.96 100.00 99.09 98.94 99.25 100.00 100.00 97.70 97.39 97.96 97.47 97.96 99.26 98.53 97.75 97.52 99.38 97.56 97.96 98.55 99.22 98.41 100.00 98.56 98.33 95.45 100.00 100.00 99.24 99.20 97.78 97.99 95.96 98.78 97.96 94.95 97.48 100.00 97.95 97.92 99.30 95.83 100.00 96.83 99.07 99.15 99.12 100.00 K intron_retention lolal,I_chr2R_14043671_14043736,I_chr2R_14043671_14043740,I_chr2R_14043671_14043901,RI_chr2R_14043671_14044082,I_chr2R_14043671_14044191,I_chr2R_14043671_14044461,I_chr2R_14043671_14045289,I_chr2R_14043671_14045344 chr2R - chr2R_14043671_14043736 chr2R_14043670_14043671;chr2R_14043736_14043737 chr2R_14043571_14043670;chr2R_14043737_14043836 87.50 NA NA 90.00 NA NA NA 66.67 78.57 NA NA 66.67 NA 81.82 70.00 100.00 NA NA 87.50 89.47 87.50 66.67 60.00 NA NA NA NA NA 88.89 NA NA NA NA 93.33 NA NA NA NA NA 61.11 NA 93.33 NA NA NA NA NA NA 100.00 NA NA NA NA NA 77.78 88.89 NA NA K intron_retention CrebB-17A,I_chrX_18261213_18269281,I_chrX_18265640_18266060,I_chrX_18265982_18266063 chrX + chrX_18267235_18267319 chrX_18267234_18267235;chrX_18267319_18267320 chrX_18267067_18267234;chrX_18267320_18267488 11.90 15.15 8.33 17.65 9.09 4.76 9.09 10.00 9.26 18.52 0.00 11.90 10.53 14.29 10.71 0.00 0.00 4.76 13.33 16.67 5.00 17.95 10.53 16.22 10.53 28.00 15.62 36.36 19.35 11.36 12.00 10.53 10.81 13.16 10.53 32.26 15.79 11.90 11.63 12.24 15.79 9.52 11.11 4.35 17.95 18.92 17.39 28.00 8.93 9.68 16.22 13.33 12.50 0.00 8.70 10.53 13.79 17.65 K jcn_only_AA Mitf,REI_chr4_1223922_1223965,I_chr4_1225890_1225947 chr4 + chr4_1223922_1224042;chr4_1223922_1223965 chr4_1223922_1223985 chr4_1223822_1223921;chr4_1224043_1224065 84.96 NA 87.50 88.89 66.67 70.83 91.11 86.21 86.15 NA 76.92 88.64 92.31 90.48 82.76 81.48 88.24 NA 89.74 85.71 84.00 NA 66.67 NA NA NA 52.17 NA NA NA 74.19 NA 80.00 77.59 NA NA NA NA NA 88.89 NA 84.21 84.00 NA NA NA NA 93.33 86.67 NA NA NA NA NA 80.56 NA NA NA K intron_retention OstStt3 chr3R - chr3R_20893054_20893106 chr3R_20893053_20893054;chr3R_20893106_20893107 chr3R_20892855_20893053;chr3R_20893107_20893577 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.45 0.00 0.42 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA betaTub60D chr2R + chr2R_20198354_20198418 chr2R_20198354_20198415 chr2R_20198245_20198353;chr2R_20198419_20198660 53.00 48.67 40.98 52.14 43.90 43.89 48.18 53.81 51.94 60.36 41.63 55.12 44.64 48.21 44.80 50.84 42.12 45.99 39.80 53.20 43.03 55.69 52.42 55.90 51.17 49.85 54.41 53.00 55.49 53.36 45.17 54.85 62.55 48.43 54.57 53.97 52.63 54.14 53.17 57.60 59.11 53.40 47.23 56.03 55.84 56.76 51.17 60.71 51.10 54.35 56.49 49.07 54.91 54.67 41.60 54.90 52.95 60.35 K intron_retention sec31,I_chr2R_4783150_4783708 chr2R + chr2R_4782673_4782734 chr2R_4782672_4782673;chr2R_4782734_4782735 chr2R_4781709_4782672;chr2R_4782735_4782978 0.00 0.00 1.83 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.45 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 2.50 0.00 0.89 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor sll chr3R + chr3R_13432052_13432106 chr3R_13432052_13432099 chr3R_13431835_13432051;chr3R_13432107_13432287 16.67 16.67 22.73 15.15 NA 19.05 16.67 11.11 14.29 NA 35.71 27.27 23.81 14.29 9.68 13.04 12.50 5.88 12.50 14.29 21.43 27.78 32.43 26.09 9.09 14.29 15.38 16.67 15.79 15.38 10.00 23.08 15.00 22.73 29.41 22.22 16.67 8.70 20.83 14.29 25.00 12.50 25.00 20.00 25.00 16.67 28.57 9.09 19.35 17.24 16.67 18.75 12.50 23.53 16.67 15.38 13.64 12.50 K cassette mbc,I_chr3R_19615584_19615649,I_chr3R_19625220_19625288 chr3R + chr3R_19620963_19622820 chr3R_19620963_19622106;chr3R_19622221_19622820 chr3R_19622107_19622220 chr3R_19620788_19620962;chr3R_19622821_19625219 0.99 0.00 1.47 1.61 0.00 0.00 0.00 2.27 1.53 6.67 1.59 0.67 1.82 0.00 1.41 1.83 1.56 1.23 1.43 0.56 0.00 1.92 0.90 0.00 1.96 0.00 0.99 0.00 0.00 0.00 0.00 3.45 0.00 0.90 1.79 3.77 0.00 2.38 0.00 0.00 0.00 1.45 1.47 1.52 0.00 1.92 2.08 0.00 1.37 2.08 2.30 0.00 4.35 0.00 1.20 0.00 0.00 0.00 K intron_retention CG12567,I_chr2LHet_21570_31347,I_chr2LHet_21570_31874 chr2LHet - chr2LHet_21570_32572 chr2LHet_21569_21570;chr2LHet_32572_32573 chr2LHet_21470_21569;chr2LHet_32573_32876 0.00 0.00 0.00 4.62 0.00 0.00 1.18 1.87 4.21 0.00 0.00 3.70 4.17 4.35 0.00 2.20 0.00 0.00 0.00 2.90 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 NA 0.00 2.27 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.11 0.00 0.00 NA 0.00 0.00 0.00 5.41 0.00 0.00 0.00 NA 0.00 3.03 0.00 0.00 0.00 K cassette prominin-like,I_chr3L_3121200_3123087 chr3L - chr3L_3117257_3117833 chr3L_3117257_3117345;chr3L_3117406_3117833 chr3L_3117346_3117405 chr3L_3117083_3117256;chr3L_3117834_3117973 94.57 94.38 98.09 72.82 95.85 97.26 95.18 90.96 95.83 94.79 89.69 92.43 96.50 98.05 95.40 98.47 92.86 95.54 95.02 94.15 91.10 98.02 85.30 91.98 94.48 87.30 90.31 93.67 77.11 94.94 94.32 97.62 95.86 96.48 96.69 92.55 92.89 92.43 95.80 96.85 90.84 96.09 95.21 95.52 96.86 93.60 92.98 96.20 94.44 94.57 93.38 96.27 91.41 91.26 96.91 92.22 91.74 95.86 K jcn_only_AD CG5961,RI_chr3R_8285626_8285694,I_chr3R_8285631_8285980 chr3R - chr3R_8285631_8285980 chr3R_8285631_8285694 chr3R_8285531_8285630;chr3R_8285981_8286014 90.00 80.65 NA 79.17 NA 80.00 93.33 84.85 83.72 NA NA 85.71 NA NA 90.91 93.55 NA NA 87.50 82.61 90.00 NA 96.30 96.55 NA NA 85.19 90.91 NA NA 92.31 NA NA 85.29 NA 76.19 100.00 NA NA 89.19 NA 93.55 NA 90.91 NA 85.19 85.71 92.59 88.24 NA 96.15 86.96 95.24 91.30 NA 100.00 94.44 NA K intron_retention lig3 chr3R - chr3R_8224931_8224993 chr3R_8224930_8224931;chr3R_8224993_8224994 chr3R_8224736_8224930;chr3R_8224994_8226160 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 10.53 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 NA K intron_retention Eb1,RI_chr2R_2640290_2642206,I_chr2R_2640494_2642206,I_chr2R_2641187_2642206,RI_chr2R_2641944_2642025,I_chr2R_2641954_2642206,I_chr2R_2642491_2642549 chr2R + chr2R_2640494_2641684 chr2R_2640493_2640494;chr2R_2641684_2641685 chr2R_2640394_2640493;chr2R_2641685_2641782 37.04 NA 46.15 28.00 NA NA 40.00 37.04 16.95 NA 50.00 33.33 NA NA NA 39.29 17.65 14.29 24.14 53.33 NA 73.68 100.00 NA NA 22.73 90.00 NA NA NA 24.24 NA 45.45 16.67 NA NA NA 60.00 NA NA NA 30.77 25.00 41.18 NA NA NA NA 31.58 NA 69.23 43.75 NA NA 36.84 NA NA NA K intron_retention CG32486,I_chr3L_3058125_3060004,I_chr3L_3058125_3070650,I_chr3L_3058244_3070161,R_chr3L_3061335_3069863 chr3L - chr3L_3058125_3070161 chr3L_3058124_3058125;chr3L_3070161_3070162 chr3L_3058066_3058124;chr3L_3070162_3070261 6.67 5.97 10.26 32.00 5.00 0.00 3.23 12.96 6.98 0.00 9.09 10.11 4.65 12.77 2.38 21.43 13.79 5.17 6.67 9.71 6.67 12.50 9.52 8.11 7.25 0.00 3.70 0.00 3.57 7.27 12.50 8.00 7.02 8.06 13.04 3.23 1.83 2.99 4.59 5.88 0.00 8.08 13.79 6.06 0.00 1.67 6.76 0.00 7.69 3.03 11.69 8.89 2.38 3.92 6.90 1.72 0.00 0.00 K cassette loco,I_chr3R_18448629_18449211,I_chr3R_18456329_18462522 chr3R - chr3R_18448629_18461366;chr3R_18448629_18462522 chr3R_18448629_18455274;chr3R_18456329_18461366,chr3R_18456329_18462522 chr3R_18455275_18456328 chr3R_18448529_18448628;chr3R_18462523_18462622 78.12 65.22 84.21 51.85 75.00 61.90 75.00 80.95 75.00 91.67 83.33 78.12 80.00 84.62 75.00 71.43 71.43 50.00 80.00 79.41 69.23 88.46 76.67 76.67 78.95 90.91 73.08 96.55 96.15 73.08 93.75 73.33 70.37 82.61 80.00 88.24 84.38 85.71 73.53 76.67 100.00 66.67 69.23 84.21 72.73 81.82 90.48 66.67 75.00 82.35 78.79 92.31 75.00 81.25 80.00 77.78 64.71 57.14 K jcn_only_AA CG9007,I_chr3L_13995402_13996269,I_chr3L_13995402_13996272,I_chr3L_13995402_13996296,I_chr3L_13995480_13996292,RI_chr3L_14010982_14011111 chr3L + chr3L_13995402_13996272;chr3L_13995402_13996292;chr3L_13995402_13996269 chr3L_13995402_13996296 chr3L_13995380_13995401;chr3L_13996297_13996360 2.94 NA 5.00 3.03 NA NA 0.00 4.76 2.94 NA NA 0.00 NA NA 9.52 6.25 NA NA 5.00 5.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 4.76 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA NA NA 0.00 2.56 NA NA NA NA NA 9.52 NA NA NA K intron_retention CG2519 chr3R - chr3R_1370791_1371914 chr3R_1370790_1370791;chr3R_1371914_1371915 chr3R_1370469_1370790;chr3R_1371915_1372122 33.33 22.22 33.33 11.11 29.41 23.08 50.00 25.00 35.29 36.36 NA 25.81 66.67 30.77 34.78 33.33 29.41 25.00 40.00 34.78 23.08 33.33 28.21 33.33 45.45 31.82 33.33 NA 40.00 28.57 45.45 NA 35.00 33.33 25.00 9.52 26.67 33.33 29.41 26.92 NA 35.48 23.08 57.14 63.64 23.53 45.45 41.67 31.03 46.15 25.93 23.08 NA 33.33 33.33 NA NA NA K intron_retention CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789733_9789790 chr2L_9789732_9789733;chr2L_9789790_9789791 chr2L_9789719_9789732;chr2L_9789791_9789832 3.03 0.00 3.66 3.29 7.14 3.17 3.33 4.43 7.01 0.00 2.70 4.10 3.77 2.78 4.11 0.00 6.45 1.82 1.15 0.00 0.00 3.28 0.00 0.00 6.45 0.00 10.26 9.09 4.26 0.00 1.55 5.13 0.00 2.63 5.00 7.14 2.00 6.25 4.62 1.54 0.00 2.40 6.90 1.49 0.00 0.00 0.00 1.72 5.30 6.25 3.51 7.41 0.00 0.00 5.38 3.03 12.00 0.00 K cassette I_chr2L_71805_74902,galectin,I_chr2L_72082_75077,RI_chr2L_72978_75077,RI_chr2L_73693_75077,RI_chr2L_74573_75077 chr2L + chr2L_74573_75077;chr2L_72978_75077;chr2L_73693_75077 chr2L_73693_74902,chr2L_72978_74902,chr2L_74573_74902;chr2L_75019_75077 chr2L_74903_75018 chr2L_72878_72977;chr2L_75078_75177 88.89 89.66 96.43 88.46 83.33 96.00 86.15 90.00 88.57 91.67 95.83 87.72 96.97 88.89 87.50 84.00 86.67 96.15 86.96 86.54 93.75 91.30 86.21 95.00 92.86 80.00 88.89 95.00 71.43 95.45 73.08 90.00 94.44 89.29 88.89 82.35 74.07 78.26 86.36 90.48 78.12 89.66 89.29 88.24 84.62 85.00 95.83 88.89 90.38 93.33 83.78 90.48 88.89 85.00 78.57 90.32 94.44 85.71 K jcn_only_AA CG30020,I_chr2R_6778098_6778140 chr2R + chr2R_6778765_6778915 chr2R_6778765_6778912 chr2R_6778492_6778764;chr2R_6778916_6779822 91.78 NA 96.00 NA NA NA NA NA 81.58 NA NA 100.00 NA NA NA 95.00 NA NA NA 90.24 NA 93.33 91.18 85.71 NA 95.00 86.36 90.00 80.65 91.89 NA 96.43 87.50 92.59 NA NA 91.30 NA 85.71 89.39 NA 94.44 NA 100.00 93.33 91.67 NA 87.76 94.87 96.30 NA NA NA NA 100.00 NA NA 89.83 K intron_retention CG2656,noncoding_15110,I_chr3R_2978972_2979025 chr3R + chr3R_2971304_2976772 chr3R_2971303_2971304;chr3R_2976772_2976773 chr3R_2970645_2971303;chr3R_2976773_2976907 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Hr39,I_chr2L_21256047_21256260 chr2L + chr2L_21237347_21238280;chr2L_21237421_21238280;chr2L_21237364_21238280;chr2L_21237397_21238280;chr2L_21237405_21238280 chr2L_21237385_21238280 chr2L_21238281_21238529;chr2L_21237247_21237346 2.44 NA NA 2.86 NA NA 0.00 3.23 2.44 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 4.44 NA NA 0.00 10.00 NA NA 3.12 NA NA NA 4.55 NA NA 5.56 0.00 NA NA NA NA 0.00 NA 2.86 NA 0.00 NA NA NA 0.00 4.76 NA 4.17 NA NA NA 0.00 NA NA NA K jcn_only_AA Caf1,mRpS10 chr3R + chr3R_11051637_11051690 chr3R_11051637_11051687 chr3R_11051568_11051636;chr3R_11051691_11051756 94.48 95.16 92.11 95.40 92.44 93.20 95.83 92.59 93.27 95.10 98.48 94.63 95.77 98.01 93.27 95.56 92.31 94.16 95.34 95.12 91.54 89.19 94.48 94.70 90.35 94.97 91.04 96.03 94.64 94.41 92.54 93.33 93.33 93.36 91.60 95.51 92.02 96.09 95.00 95.08 94.03 94.91 93.38 93.03 93.71 93.55 93.17 96.77 94.65 95.07 95.54 92.39 90.24 97.41 95.17 93.15 94.51 96.77 K intron_retention l(1)G0196,I_chrX_21900456_21904601 chrX + chrX_21908018_21908943 chrX_21908017_21908018;chrX_21908943_21908944 chrX_21907441_21908017;chrX_21908944_21909468 0.00 0.00 NA NA NA NA NA NA 8.00 NA NA NA NA NA NA NA NA NA NA 14.29 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 4.76 NA 0.00 NA NA NA NA NA NA 13.33 0.00 0.00 NA NA NA NA NA 7.14 NA K alternative_acceptor mRpS18B chr2L - chr2L_20096791_20096865 chr2L_20096804_20096865 chr2L_20096866_20097174;chr2L_20096431_20096790 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 98.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette AlkB,RI_chrX_15752571_15753225 chrX - chrX_15752571_15753225 chrX_15752571_15752632;chrX_15753175_15753225 chrX_15752633_15753174 chrX_15752471_15752570;chrX_15753226_15753325 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 95.00 100.00 100.00 93.75 100.00 100.00 90.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K multi_cassette syd,I_chr3L_7924891_7925400 chr3L - chr3L_7919938_7921016 chr3L_7919938_7920587;chr3L_7920680_7920859;chr3L_7920921_7921016 chr3L_7920588_7920679;chr3L_7920860_7920920 chr3L_7919673_7919937;chr3L_7921017_7921217 18.75 11.11 25.00 9.68 30.00 14.29 13.64 24.00 17.07 22.22 15.00 25.00 44.44 17.65 19.05 13.64 21.05 9.52 17.65 20.51 15.38 34.78 12.90 20.83 18.75 16.67 16.67 6.67 24.14 11.76 24.00 30.77 14.81 26.09 25.00 23.81 20.69 13.64 16.00 3.28 20.83 17.50 25.00 20.00 19.05 15.15 22.73 30.77 16.22 15.62 24.00 18.75 20.00 17.39 10.53 25.00 17.65 12.24 K jcn_only_AA l(2)35Cc,RI_chr2L_15256698_15256752 chr2L + chr2L_15256698_15256752 chr2L_15256698_15256748 chr2L_15256624_15256697;chr2L_15256753_15256852 98.31 100.00 97.30 97.73 100.00 100.00 94.74 98.15 97.62 NA 94.44 100.00 96.97 100.00 100.00 97.37 100.00 96.15 100.00 97.83 100.00 100.00 98.28 100.00 89.29 100.00 100.00 100.00 96.67 100.00 96.67 96.55 96.15 100.00 100.00 100.00 100.00 100.00 100.00 96.08 96.43 100.00 100.00 100.00 86.21 98.00 100.00 NA 98.31 100.00 100.00 96.77 95.83 97.56 95.65 92.00 98.28 97.44 K cassette CG1718 chrX - chrX_21169962_21171177 chrX_21169962_21170570;chrX_21170637_21171177 chrX_21170571_21170636 chrX_21169373_21169961;chrX_21171178_21171339 80.00 62.50 90.00 46.15 NA NA 33.33 73.33 75.00 NA NA 85.71 NA NA NA 80.00 NA NA 85.71 85.71 NA 100.00 77.78 NA NA NA NA NA NA 71.43 NA NA 100.00 100.00 NA NA 85.71 NA NA 88.89 NA 71.43 NA 88.89 NA NA NA NA 66.67 NA NA 62.50 NA NA NA NA NA NA K alternative_donor F_chrX_15764251_15765393,CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15764432_15765393;chrX_15764247_15765393;chrX_15764620_15765393;chrX_15764599_15765393 chrX_15764522_15765393 chrX_15765394_15765493;chrX_15764236_15764246 45.55 50.00 35.71 44.00 28.57 50.00 50.00 54.29 50.00 100.00 16.67 44.00 68.75 44.44 78.57 59.46 46.67 41.67 63.16 64.00 40.00 33.33 16.67 33.33 28.57 50.00 41.67 NA 40.00 20.00 50.00 60.00 44.44 53.12 18.18 37.50 25.00 66.67 66.67 40.00 50.00 55.17 26.67 40.00 66.67 44.44 33.33 53.85 33.33 50.00 30.77 71.43 NA 20.00 57.14 NA 50.00 62.50 K intron_retention Sp7 chr3R + chr3R_3588288_3588356 chr3R_3588287_3588288;chr3R_3588356_3588357 chr3R_3588183_3588287;chr3R_3588357_3588643 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 K intron_retention CG8121,RI_chr3R_5183458_5183705 chr3R + chr3R_5160975_5161218 chr3R_5160974_5160975;chr3R_5161218_5161219 chr3R_5160915_5160974;chr3R_5161219_5161357 25.00 NA NA 33.33 NA NA 28.57 NA 29.41 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA 25.00 NA NA NA NA NA 23.08 NA NA 20.00 K jcn_only_AD svr,RI_chrX_421417_421591 chrX + chrX_401762_401901 chrX_401840_401901 chrX_401902_402566;chrX_400632_401761 100.00 100.00 100.00 97.06 100.00 NA 94.12 97.83 100.00 100.00 100.00 100.00 NA 95.24 100.00 100.00 NA 96.00 95.24 98.00 100.00 96.97 100.00 98.15 100.00 NA 100.00 96.43 100.00 100.00 NA 100.00 100.00 100.00 100.00 97.78 100.00 100.00 98.39 100.00 98.36 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 96.88 100.00 95.65 100.00 100.00 100.00 100.00 K intron_retention Top1 chrX + chrX_15215405_15215893 chrX_15215404_15215405;chrX_15215893_15215894 chrX_15215277_15215404;chrX_15215894_15216860 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Chro,I_chr3L_22870968_22871036,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22871119_22871802 chr3L_22871118_22871119;chr3L_22871802_22871803 chr3L_22871037_22871118;chr3L_22871803_22871822 96.72 100.00 94.44 100.00 91.67 91.67 96.77 100.00 100.00 NA 100.00 96.00 93.75 100.00 100.00 96.43 93.33 94.12 100.00 85.71 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 90.00 100.00 94.12 NA 76.47 92.86 77.78 100.00 94.74 86.67 90.00 95.45 NA 100.00 94.12 100.00 100.00 100.00 NA 94.74 96.67 100.00 100.00 92.86 NA 88.89 100.00 92.31 100.00 94.44 K alternative_donor CG3408,I_chr3L_9501587_9501663,RI_chr3L_9501725_9502450,I_chr3L_9504402_9504516 chr3L - chr3L_9501725_9502450 chr3L_9501725_9502438 chr3L_9501665_9501724;chr3L_9502451_9502550 100.00 NA 100.00 100.00 NA NA 88.89 100.00 100.00 NA NA 91.67 NA 100.00 NA 100.00 NA NA NA 100.00 NA NA 81.82 NA NA NA NA NA NA 100.00 91.67 100.00 100.00 92.86 87.50 NA NA NA 100.00 94.44 90.00 100.00 100.00 NA 100.00 100.00 NA 95.24 90.91 NA 88.89 NA NA NA NA 100.00 NA 91.67 K intron_retention CG11790,CG11791 chr3R + chr3R_20875669_20876902 chr3R_20875668_20875669;chr3R_20876902_20876903 chr3R_20875600_20875668;chr3R_20876903_20877278 79.41 72.73 85.00 65.00 74.19 81.25 76.92 80.00 83.78 55.56 91.30 83.33 62.07 90.48 83.33 81.82 92.00 58.62 79.41 81.40 95.00 87.80 73.91 81.40 89.47 85.00 87.10 77.78 79.49 82.86 85.19 75.86 82.50 86.36 75.00 81.82 70.73 80.65 80.00 73.81 68.89 81.63 80.00 76.67 65.22 68.89 64.71 60.78 86.84 65.22 69.44 79.17 44.44 78.95 73.53 64.71 59.52 44.93 K intron_retention CG14478 chr2R + chr2R_13345378_13349498 chr2R_13345377_13345378;chr2R_13349498_13349499 chr2R_13345201_13345377;chr2R_13349499_13349990 2.41 0.00 4.08 0.00 0.00 2.70 7.14 2.41 1.89 0.00 0.00 2.74 5.71 0.00 3.70 2.90 5.26 0.00 0.00 2.97 5.26 4.65 2.90 4.55 3.03 2.78 6.67 10.87 6.52 0.00 6.82 3.12 3.57 4.82 0.00 4.65 0.00 0.00 0.00 2.11 2.38 1.05 0.00 2.13 4.65 4.00 2.13 2.25 4.44 0.00 1.35 5.26 0.00 0.00 0.00 0.00 0.00 5.00 K cassette caz,RI_chrX_16183356_16185973 chrX + chrX_16183356_16185973 chrX_16183356_16185089;chrX_16185125_16185973 chrX_16185090_16185124 chrX_16183259_16183355;chrX_16185974_16186073 70.11 72.34 81.82 80.36 81.48 93.55 64.71 78.79 77.19 70.11 70.59 73.44 69.23 65.38 79.07 70.83 82.14 84.09 73.08 69.44 76.00 70.30 68.18 62.63 46.03 61.29 69.39 85.29 55.70 57.76 27.03 77.17 64.21 67.92 74.60 68.75 65.45 72.84 69.41 70.87 55.41 76.84 68.97 65.08 60.67 63.33 74.55 67.05 77.33 66.67 61.90 68.57 72.13 65.22 81.08 75.00 76.00 67.20 K alternative_acceptor CoVa,I_chr3R_7645367_7645428 chr3R + chr3R_7645367_7645432 chr3R_7645367_7645409 chr3R_7645359_7645366;chr3R_7645433_7645528 5.00 11.76 3.42 5.01 6.06 5.67 3.95 3.52 4.05 4.76 3.65 4.91 4.88 5.70 5.70 5.61 4.55 4.37 3.41 4.15 3.61 3.21 10.42 9.78 13.43 6.13 40.00 25.00 9.52 3.47 2.95 4.32 1.59 3.97 10.53 6.38 11.70 8.96 10.40 5.00 1.84 4.38 4.02 8.57 2.33 4.46 18.03 1.94 3.33 18.75 21.43 5.71 7.76 45.00 2.96 20.31 11.54 1.21 K intron_retention CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27045257 chr3R_27044770_27044771;chr3R_27045257_27045258 chr3R_27044671_27044770;chr3R_27045258_27045273 0.90 0.90 0.25 0.00 0.41 0.00 1.42 0.44 0.90 1.47 0.00 0.38 1.03 0.65 0.17 1.16 0.38 0.63 0.57 0.38 0.33 0.00 14.29 13.33 7.69 0.38 15.00 3.77 5.00 2.06 0.73 0.60 1.06 0.23 2.00 6.90 5.00 12.50 3.03 1.76 1.06 0.46 0.25 0.99 0.24 0.87 12.00 0.55 0.41 16.00 10.00 8.33 0.45 12.50 0.69 14.71 3.92 0.33 K intron_retention CG9776 chr3R - chr3R_154130_154186 chr3R_154129_154130;chr3R_154186_154187 chr3R_153859_154129;chr3R_154187_155756 99.13 100.00 98.08 100.00 100.00 97.37 100.00 99.13 99.12 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 97.73 98.53 98.97 100.00 98.08 100.00 100.00 100.00 100.00 98.04 100.00 97.44 100.00 97.50 100.00 100.00 100.00 96.97 97.14 96.67 96.77 97.14 98.15 100.00 99.01 98.18 100.00 100.00 97.65 98.36 100.00 98.13 98.48 98.55 97.44 100.00 100.00 100.00 98.31 98.15 98.59 K intron_retention CG6613 chr2R + chr2R_17993080_17993150 chr2R_17993079_17993080;chr2R_17993150_17993151 chr2R_17992559_17993079;chr2R_17993151_17993601 0.00 0.00 0.00 5.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 3.45 5.26 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 8.00 1.72 0.00 5.77 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 2.99 0.00 0.00 0.00 0.00 0.00 2.04 0.00 K intron_retention Rtnl1,I_chr2L_4994995_5006383,RE_chr2L_4994997_5008180,I_chr2L_4999312_5000248,I_chr2L_4999386_4999670,I_chr2L_4999386_5000201,I_chr2L_5027222_5028118 chr2L - chr2L_4999386_5000248 chr2L_4999385_4999386;chr2L_5000248_5000249 chr2L_4999376_4999385;chr2L_5000249_5000301 28.99 29.41 16.67 20.00 47.37 30.43 39.13 25.71 30.91 30.00 28.57 27.03 36.84 33.33 32.00 17.31 21.43 22.22 40.91 28.21 22.22 42.11 31.58 35.71 NA 26.32 46.67 40.00 33.33 36.36 22.73 12.50 11.76 28.21 41.67 NA 41.67 30.77 42.86 9.09 14.29 33.33 NA 47.06 NA NA 16.67 17.39 32.56 15.79 53.33 NA 9.09 NA 28.57 17.65 10.00 10.26 K intron_retention cmet chr2L - chr2L_11266558_11267150 chr2L_11266557_11266558;chr2L_11267150_11267151 chr2L_11262819_11266557;chr2L_11267151_11268052 0.00 0.00 0.00 5.13 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 4.35 0.00 0.00 NA NA NA 0.00 NA 0.00 3.85 0.00 0.00 3.23 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K jcn_only_AD Nedd8 chr2L - chr2L_18951347_18951416 chr2L_18951347_18951406 chr2L_18951280_18951346;chr2L_18951417_18951482 100.00 99.22 100.00 100.00 100.00 100.00 99.49 99.39 99.06 100.00 100.00 99.51 100.00 98.06 100.00 100.00 98.98 98.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.43 100.00 100.00 100.00 100.00 100.00 99.42 100.00 100.00 98.75 97.92 99.21 98.97 100.00 99.08 100.00 100.00 99.11 100.00 100.00 99.13 99.21 100.00 99.50 99.12 K multi_cassette CG33558,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,I_chr2R_2820149_2820628,EI_chr2R_2820947_2821570,CREI_chr2R_2832933_2850384 chr2R - chr2R_2817876_2821570 chr2R_2817876_2819347;chr2R_2820203_2820628;chr2R_2821433_2821570 chr2R_2819348_2820202;chr2R_2820629_2821432 chr2R_2817851_2817875;chr2R_2821571_2821639 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 K jcn_only_AA CG12213 chr3R - chr3R_7792456_7792518 chr3R_7792462_7792518 chr3R_7792519_7792847;chr3R_7792210_7792455 100.00 100.00 100.00 99.63 99.05 100.00 100.00 99.46 100.00 100.00 100.00 100.00 100.00 100.00 99.39 100.00 100.00 100.00 100.00 99.19 100.00 100.00 100.00 98.79 100.00 99.31 98.44 100.00 100.00 100.00 98.48 100.00 100.00 100.00 100.00 98.71 100.00 100.00 100.00 100.00 99.34 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.66 100.00 100.00 100.00 98.61 100.00 100.00 100.00 98.52 99.56 K alternative_acceptor AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9003790_9004854 chrX_9003790_9004650 chrX_9003721_9003789;chrX_9004855_9004862 55.56 NA 50.00 47.06 NA 50.00 37.50 55.56 41.18 71.43 NA 36.84 50.00 30.00 36.36 40.00 30.00 NA 37.50 53.85 NA 93.75 75.00 42.86 88.89 35.71 NA NA 91.67 75.00 33.33 70.00 96.15 42.11 81.82 88.89 83.33 NA 66.67 87.50 93.33 44.44 NA 87.50 71.43 80.00 60.00 95.00 53.33 50.00 63.64 NA NA NA 41.67 55.56 NA 90.91 K jcn_only_AA myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_716066_716613;chr4_715043_716613 chr4_716153_716613 chr4_716614_716661 25.00 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor Spred,I_chr2R_10655876_10656041,I_chr2R_10655876_10656193,I_chr2R_10655876_10656868 chr2R - chr2R_10655876_10656848;chr2R_10655876_10656878;chr2R_10655876_10656526;chr2R_10655876_10656871 chr2R_10655876_10656782 chr2R_10655776_10655875;chr2R_10656879_10656886 86.67 93.33 78.57 79.41 93.33 84.62 81.25 80.77 84.48 100.00 86.67 85.71 81.25 86.36 85.00 85.71 93.75 83.33 81.82 87.88 92.86 66.67 100.00 81.82 83.33 80.00 77.78 85.71 66.67 90.91 90.91 100.00 88.89 87.10 80.00 91.67 88.89 100.00 87.50 87.50 66.67 82.35 84.62 90.48 100.00 85.71 88.89 86.67 83.33 83.33 82.35 92.31 100.00 100.00 90.91 100.00 90.00 87.50 K alternative_acceptor Pp4-19C,I_chrX_20293932_20294672,RI_chrX_20293980_20294069,REI_chrX_20294004_20294672 chrX - chrX_20293980_20294672 chrX_20294028_20294672 chrX_20294673_20294772;chrX_20293904_20293979 4.29 2.61 6.93 3.92 3.45 2.06 6.06 7.37 3.47 6.56 6.90 3.18 5.88 4.29 4.55 3.26 7.14 5.26 2.35 3.90 5.26 3.95 5.59 5.69 6.52 3.37 3.33 6.80 6.90 4.12 2.22 6.00 5.71 4.10 3.30 2.94 3.68 4.69 3.94 3.86 7.27 4.38 5.17 4.69 5.62 3.88 4.71 3.74 3.95 7.32 1.43 6.94 3.95 4.21 2.86 3.33 4.62 7.55 K intron_retention MBD-like chr3R + chr3R_5385754_5386644 chr3R_5385753_5385754;chr3R_5386644_5386645 chr3R_5385501_5385753;chr3R_5386645_5387357 1.49 0.00 4.88 8.06 0.00 0.00 2.08 3.23 5.31 0.00 0.00 0.00 8.33 7.69 4.08 7.69 0.00 5.13 0.00 1.57 5.88 4.44 5.06 2.78 0.00 0.00 3.12 0.00 0.00 0.00 0.00 4.84 1.32 1.49 0.00 0.00 1.79 2.56 1.35 1.28 0.00 4.60 0.00 0.00 1.27 2.30 3.23 0.00 1.90 1.32 0.00 2.08 5.00 4.08 0.00 1.54 0.00 2.15 K jcn_only_AA CG2219,I_chr4_199813_199889,RI_chr4_202143_202194 chr4 - chr4_199838_199889;chr4_199813_199889 chr4_199822_199889 chr4_199890_199942;chr4_199758_199812 6.17 4.00 8.33 9.52 2.56 0.00 8.48 4.17 3.55 7.69 0.00 7.00 4.23 7.58 2.27 7.09 8.45 10.53 8.06 6.17 5.88 10.00 3.88 3.45 7.55 7.41 3.49 5.36 6.98 1.59 6.25 5.36 8.33 10.53 5.77 4.08 5.56 7.69 7.14 3.57 6.82 9.00 11.76 3.70 6.67 5.00 0.00 6.56 7.63 7.55 6.49 5.26 0.00 7.69 2.90 3.28 3.09 3.90 K intron_retention pix,I_chr3L_8967436_8967756 chr3L - chr3L_8967172_8967233 chr3L_8967171_8967172;chr3L_8967233_8967234 chr3L_8966561_8967171;chr3L_8967234_8967447 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 K intron_retention CG13900,I_chr3L_830745_830907 chr3L - chr3L_831243_831315 chr3L_831242_831243;chr3L_831315_831316 chr3L_830908_831242;chr3L_831316_831790 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Csk,I_chr3R_7463337_7463512,I_chr3R_7468928_7472509 chr3R - chr3R_7460867_7460937 chr3R_7460866_7460867;chr3R_7460937_7460938 chr3R_7460780_7460866;chr3R_7460938_7461133 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG34413,RI_chr2R_20769295_20770153,I_chr2R_20771136_20772048,I_chr2R_20773500_20774745 chr2R + chr2R_20769471_20770153;chr2R_20769150_20770153;chr2R_20769295_20770153 chr2R_20769206_20770153 chr2R_20770154_20770253;chr2R_20769141_20769149 1.20 0.00 0.00 0.00 0.00 0.00 2.53 0.00 2.07 0.00 0.00 3.30 3.64 2.99 3.53 0.00 2.47 1.56 1.59 0.00 1.59 5.36 1.75 1.20 3.64 0.00 4.69 5.00 5.77 0.00 1.27 0.00 0.00 0.98 3.85 8.70 2.68 1.67 1.28 0.00 0.00 2.34 0.00 0.00 0.00 0.00 0.00 3.23 1.37 2.22 0.00 1.96 5.13 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL35,I_chrX_5566913_5567030,I_chrX_5567168_5567220 chrX + chrX_5566909_5567036 chrX_5566908_5566909;chrX_5567036_5567037 chrX_5566840_5566908;chrX_5567037_5567130 99.36 99.28 99.31 99.77 99.53 99.57 99.36 99.40 99.59 100.00 99.52 99.35 99.56 100.00 100.00 99.71 100.00 99.69 100.00 99.04 98.64 97.88 96.34 98.52 100.00 99.64 98.94 96.15 98.50 99.15 98.43 99.38 99.56 100.00 98.98 98.77 100.00 100.00 98.54 99.50 100.00 99.81 99.55 98.98 99.70 97.73 99.12 97.87 98.85 99.28 98.70 100.00 97.55 97.67 99.38 96.75 98.54 98.56 K intron_retention capu,I_chr2L_3884519_3902594 chr2L - chr2L_3893605_3895612 chr2L_3893604_3893605;chr2L_3895612_3895613 chr2L_3893262_3893604;chr2L_3895613_3896108 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 NA 0.00 2.78 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 NA 4.35 0.00 7.69 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 3.33 0.00 0.00 0.00 NA 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor alt,I_chr3R_13503901_13504925,RI_chr3R_13503901_13505368,I_chr3R_13503901_13507824 chr3R - chr3R_13503901_13508178;chr3R_13503901_13508123;chr3R_13503901_13508180 chr3R_13503901_13507816 chr3R_13503801_13503900;chr3R_13508181_13508234 15.65 11.11 9.09 3.23 4.00 3.85 14.63 6.06 9.72 28.57 32.35 6.12 4.76 3.85 5.71 11.36 8.00 7.69 9.38 9.72 28.57 38.46 21.43 9.09 11.11 5.26 25.00 36.36 40.00 22.22 13.64 16.67 27.27 9.43 25.00 50.00 25.00 20.00 25.00 23.53 20.00 10.71 7.14 22.22 23.08 42.86 25.00 42.86 8.57 16.67 27.27 20.00 16.67 NA 8.11 14.29 14.29 25.00 K cassette B52,E_chr3R_9488770_9491174 chr3R + chr3R_9487165_9487423;chr3R_9487155_9487423 chr3R_9487165_9487227,chr3R_9487155_9487227;chr3R_9487315_9487423 chr3R_9487228_9487314 chr3R_9487148_9487154;chr3R_9487424_9487581 1.26 1.78 0.88 2.56 0.68 1.08 0.78 0.78 1.17 2.14 0.85 1.73 1.11 1.05 1.20 0.80 1.37 1.06 0.97 1.18 1.45 1.79 0.81 1.88 1.67 1.12 1.59 1.69 4.17 1.14 1.31 1.48 1.14 1.00 0.69 1.01 3.29 2.96 2.13 0.77 1.45 1.03 0.64 1.94 2.58 1.90 1.10 2.69 1.08 1.89 1.26 0.95 1.81 1.72 0.79 1.33 1.29 3.25 K intron_retention Ripalpha,I_chr2L_10200237_10200415 chr2L - chr2L_10200357_10200415 chr2L_10200356_10200357;chr2L_10200415_10200416 chr2L_10200291_10200356;chr2L_10200416_10200515 14.91 8.70 13.79 19.44 15.00 7.41 16.00 10.34 14.81 NA 12.12 23.26 11.76 16.00 18.18 12.20 19.05 13.33 16.67 17.74 8.33 0.00 14.71 10.34 23.08 36.00 30.00 25.00 25.00 0.00 20.00 NA 6.67 10.26 13.33 36.36 21.43 16.67 14.29 8.89 31.58 15.22 27.78 10.00 10.53 16.67 NA 19.05 18.18 18.18 10.53 18.75 8.70 19.23 14.29 0.00 4.17 4.35 K intron_retention CG8468 chr2R + chr2R_10107548_10108091 chr2R_10107547_10107548;chr2R_10108091_10108092 chr2R_10107405_10107547;chr2R_10108092_10108270 86.67 88.57 82.93 80.95 91.30 86.67 90.20 86.79 91.75 78.57 90.24 88.61 97.44 90.24 89.47 88.57 87.18 88.57 92.86 91.15 86.49 79.41 85.71 86.67 81.82 83.33 93.10 86.36 82.76 70.59 87.50 86.11 65.33 86.96 77.42 85.42 85.29 85.19 95.45 87.88 80.00 93.10 87.18 84.91 76.47 76.92 96.00 78.46 88.61 94.44 86.21 87.50 80.77 88.24 86.00 77.42 94.12 80.00 K alternative_acceptor CG6370 chr2R - chr2R_13652554_13652615 chr2R_13652557_13652615 chr2R_13652616_13652684;chr2R_13652488_13652553 94.59 96.35 95.65 94.19 93.68 96.43 92.90 94.16 96.55 94.17 96.51 95.17 94.41 95.69 95.73 92.39 94.50 97.16 95.45 93.33 93.58 93.13 95.86 92.97 96.49 95.57 96.63 96.33 94.71 96.92 93.18 95.24 93.56 94.76 93.58 93.71 93.64 93.27 94.59 95.06 93.77 96.03 91.59 93.84 95.38 93.12 95.51 95.91 95.29 94.03 95.36 93.75 96.48 94.40 93.94 93.59 94.67 92.90 K intron_retention AGO2,RE_chr3L_15547553_15549949 chr3L + chr3L_15547323_15547389 chr3L_15547322_15547323;chr3L_15547389_15547390 chr3L_15547275_15547322;chr3L_15547390_15547572 6.62 5.65 4.90 3.17 6.62 7.92 10.90 5.42 3.51 6.80 6.06 8.06 7.33 6.02 6.50 8.22 5.85 7.02 6.81 4.54 5.70 4.11 5.76 5.22 21.18 21.65 18.94 23.08 36.73 5.62 23.53 5.06 6.61 8.17 9.62 17.65 3.13 7.94 6.43 7.00 24.39 6.93 5.79 4.35 6.42 7.89 4.81 12.69 9.27 5.45 9.52 8.33 3.45 3.33 6.75 1.19 2.99 7.69 K intron_retention I_chr2R_19932706_19933121,gammaSnap chr2R - chr2R_19936230_19936291 chr2R_19936229_19936230;chr2R_19936291_19936292 chr2R_19936162_19936229;chr2R_19936292_19936415 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 2.63 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG12753,CG14894,RI_chr3R_12268071_12268135,RI_chr3R_12268071_12268141,RI_chr3R_12268071_12268661,Pak3 chr3R - chr3R_12268071_12268661;chr3R_12268071_12268145;chr3R_12268071_12268124;chr3R_12268071_12268141 chr3R_12268071_12268135 chr3R_12267971_12268070;chr3R_12268662_12268688 4.55 3.33 5.26 3.95 4.35 9.80 6.56 4.23 3.64 6.90 2.17 2.22 5.56 2.22 2.94 4.62 5.00 8.77 1.96 6.56 6.38 4.55 4.00 3.75 2.33 3.51 5.17 6.45 6.35 7.55 13.89 8.43 3.36 5.33 5.77 5.17 7.69 5.17 5.63 3.92 3.90 1.77 4.55 1.89 2.80 4.50 4.35 3.26 7.37 4.17 2.78 11.90 5.41 5.88 4.69 3.80 3.57 8.86 K intron_retention CG34423,CG34424 chr2R + chr2R_19246495_19246554 chr2R_19246494_19246495;chr2R_19246554_19246555 chr2R_19246356_19246494;chr2R_19246555_19246727 1.68 0.00 0.00 3.85 NA 0.00 6.25 1.92 6.45 4.00 0.00 0.00 0.00 0.00 0.00 7.89 0.00 0.00 0.00 2.17 0.00 5.26 5.26 1.28 0.00 0.00 4.76 6.25 12.05 0.00 3.39 1.41 2.60 3.85 0.00 4.08 0.00 0.00 0.00 0.00 2.22 1.47 3.45 2.13 1.89 3.06 3.66 0.00 2.27 5.17 0.00 0.00 0.00 3.33 2.94 2.74 4.04 0.00 K alternative_acceptor CG2083,I_chr3L_2796679_2820058,noncoding_10229,RI_chr3L_2833393_2851558 chr3L - chr3L_2796679_2820058 chr3L_2796682_2820058 chr3L_2820059_2820158;chr3L_2796628_2796678 54.55 NA 60.00 64.29 46.15 41.67 47.06 48.48 60.00 NA 46.15 58.33 46.67 47.06 62.50 60.00 52.94 53.85 68.75 60.00 88.89 50.00 53.33 41.67 54.55 47.62 NA NA NA NA 56.25 NA 61.54 61.29 NA 50.00 64.29 81.82 NA 50.00 NA 60.87 37.50 50.00 NA 46.15 NA 75.00 55.56 NA 54.55 72.73 NA NA 63.64 NA NA 42.86 K intron_retention CG8600,eco chr3L - chr3L_7327999_7328179 chr3L_7327998_7327999;chr3L_7328179_7328180 chr3L_7327642_7327998;chr3L_7328180_7328314 0.00 0.00 0.00 5.77 0.00 0.00 0.00 0.00 1.69 2.94 0.00 3.57 4.17 0.00 0.00 0.00 0.00 0.00 3.45 1.27 0.00 1.19 1.79 0.00 0.00 0.00 6.45 0.00 1.72 1.79 0.00 0.00 0.00 1.92 0.00 1.82 2.41 0.00 1.27 0.00 11.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD E(Pc) chr2R + chr2R_7339889_7340897;chr2R_7339818_7340897 chr2R_7339807_7340897 chr2R_7340898_7340908;chr2R_7339722_7339806 15.00 NA NA NA NA NA 9.52 NA 20.83 NA NA NA NA NA NA NA NA NA NA 15.00 NA NA 17.39 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.12 NA NA NA NA NA NA NA NA NA NA K alternative_last_exon CG6151,noncoding_12788,RI_chr3L_15803949_15805547,I_chr3L_15806727_15808816 chr3L - chr3L_15803949_15806345;chr3L_15805342_15806345,chr3L_15805998_15806345 chr3L_15804494_15806345 chr3L_15803213_15803948;chr3L_15805029_15805341 chr3L_15804425_15804493 chr3L_15806346_15806453 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045275_16046104;chr3L_16045275_16045854 chr3L_16045275_16046111 chr3L_16045255_16045274;chr3L_16046112_16046204 6.25 4.55 17.39 14.29 13.33 4.55 9.09 3.03 9.09 21.05 4.55 8.89 2.94 3.70 15.38 4.35 8.33 15.38 3.03 11.11 4.17 2.04 3.23 5.00 6.25 16.13 4.76 4.00 4.35 3.70 11.11 10.00 4.17 12.00 8.33 6.67 16.00 0.00 6.25 2.44 6.25 8.00 11.54 14.29 0.00 4.76 12.50 8.70 4.17 7.14 7.69 0.00 6.25 0.00 5.71 0.00 12.50 4.35 K jcn_only_AD Rcd6,I_chr2R_16518342_16520460,I_chr2R_16518620_16518916,RI_chr2R_16520388_16520855 chr2R - chr2R_16518620_16518916;chr2R_16518620_16520855 chr2R_16518620_16520294 chr2R_16518520_16518619;chr2R_16520856_16520918 84.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 84.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RI_chr2R_3817895_3817951,RI_chr2R_3819348_3819403,CG8728 chr2R - chr2R_3826321_3826404 chr2R_3826320_3826321;chr2R_3826404_3826405 chr2R_3825942_3826320;chr2R_3826405_3826588 0.61 0.00 0.00 0.00 1.47 0.00 0.79 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 5.56 2.40 1.99 1.50 0.00 0.61 1.72 7.50 2.70 2.06 3.85 8.51 0.00 3.30 3.03 1.72 0.93 1.59 0.96 7.41 1.45 0.00 0.00 3.92 2.97 0.00 5.41 0.00 0.00 1.06 0.00 0.00 0.00 2.44 2.02 0.00 5.71 K jcn_only_AD cbs,I_chr2R_9340506_9340593,I_chr2R_9340512_9340593 chr2R + chr2R_9340536_9340593;chr2R_9340506_9340593 chr2R_9340512_9340593 chr2R_9340594_9340693;chr2R_9340412_9340505 3.33 0.00 8.00 2.33 2.86 2.86 3.20 2.50 5.38 8.33 2.86 4.65 4.88 5.36 6.90 1.14 7.14 2.33 3.03 3.74 0.00 NA 1.39 3.33 1.69 2.70 3.23 0.00 0.00 3.70 5.43 4.88 1.96 3.45 8.00 1.79 3.77 6.12 4.48 4.29 9.21 4.67 0.00 11.29 1.89 2.30 5.56 1.19 1.23 2.13 5.62 4.08 NA 6.35 1.28 3.37 4.17 0.00 K jcn_only_AD CG4119 chrX + chrX_5560347_5560409;chrX_5560351_5560409 chrX_5560355_5560409 chrX_5560410_5560501;chrX_5560114_5560346 5.26 6.12 NA NA NA NA NA NA 7.89 0.00 NA 2.50 NA NA NA NA 5.00 14.81 NA 2.94 15.00 7.14 2.00 7.27 8.33 NA 5.56 5.00 NA 5.26 NA 2.70 9.52 0.00 8.33 0.00 5.15 3.12 6.25 5.66 0.00 4.26 NA 6.38 2.33 3.57 3.12 12.77 0.00 8.51 6.67 12.12 2.86 2.94 11.11 2.44 6.06 18.18 K intron_retention piwi,RI_chr2L_10986838_10987248 chr2L - chr2L_10984342_10984945 chr2L_10984341_10984342;chr2L_10984945_10984946 chr2L_10984336_10984341;chr2L_10984946_10985100 0.00 0.00 2.38 11.76 0.00 0.00 10.91 0.00 4.55 0.00 0.00 5.63 0.00 5.71 0.00 9.52 0.00 4.65 9.52 2.60 0.00 0.00 1.89 0.00 5.26 0.00 0.00 NA 0.00 0.00 4.65 NA NA 2.33 0.00 5.56 0.00 0.00 0.00 5.71 NA 2.56 2.56 0.00 NA 4.17 0.00 0.00 4.72 0.00 3.28 8.33 0.00 0.00 2.38 0.00 0.00 0.00 K intron_retention CG31751,RI_chr2L_18677311_18677391,RI_chr2L_18677473_18677932 chr2L + chr2L_18677473_18678838 chr2L_18677472_18677473;chr2L_18678838_18678839 chr2L_18677392_18677472;chr2L_18678839_18679161 19.76 NA NA NA NA NA 33.33 25.00 19.51 NA 0.00 12.50 NA NA 21.43 43.75 NA 14.29 NA 28.57 NA 66.67 26.09 NA NA NA NA NA NA NA 35.71 NA NA 21.43 NA NA 13.33 35.71 14.29 40.00 NA 16.67 NA 21.43 NA 14.29 NA NA 15.00 NA 13.33 NA NA NA 5.00 20.00 12.50 0.00 K alternative_acceptor mr,I_chr2R_19861985_19862040 chr2R + chr2R_19861985_19862040 chr2R_19861985_19862035 chr2R_19861885_19861984;chr2R_19862041_19862140 100.00 100.00 100.00 93.75 100.00 100.00 94.74 96.55 95.83 NA 100.00 100.00 94.12 90.91 100.00 95.24 100.00 100.00 100.00 96.67 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA NA 88.89 100.00 100.00 100.00 100.00 91.67 100.00 92.31 90.91 100.00 87.50 96.43 90.91 90.00 100.00 100.00 91.67 100.00 96.15 92.31 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K intron_retention CG4935 chr2L + chr2L_16262594_16262649 chr2L_16262593_16262594;chr2L_16262649_16262650 chr2L_16262521_16262593;chr2L_16262650_16263180 0.00 NA 0.00 15.38 NA NA 0.00 12.50 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA 12.50 NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 0.00 0.00 0.00 NA NA 3.85 6.25 NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 7.41 K intron_retention TfIIEalpha,noncoding_12057 chr3L + chr3L_11676508_11676575 chr3L_11676507_11676508;chr3L_11676575_11676576 chr3L_11675401_11676507;chr3L_11676576_11677058 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.68 2.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr2L_1163632_1163759,Plap chr2L - chr2L_1168639_1168694 chr2L_1168638_1168639;chr2L_1168694_1168695 chr2L_1168633_1168638;chr2L_1168695_1169561 7.14 7.55 8.20 8.96 6.38 11.76 11.27 8.14 8.20 8.33 8.89 8.16 2.94 8.33 12.50 14.08 7.32 6.00 10.91 7.14 13.16 8.51 5.36 1.64 3.12 3.77 6.82 33.33 0.00 0.00 5.77 2.50 4.90 9.86 7.14 8.33 4.29 0.00 11.11 3.85 4.65 8.16 2.00 1.85 6.25 1.79 2.56 10.34 6.52 9.52 2.78 0.00 13.04 0.00 10.34 3.92 4.08 11.27 K alternative_donor sar1,I_chr3R_18184656_18185246,I_chr3R_18185015_18185246,I_chr3R_18185148_18185246 chr3R + chr3R_18184656_18185246;chr3R_18184351_18185246;chr3R_18185148_18185246 chr3R_18185015_18185246 chr3R_18185247_18185346;chr3R_18184285_18184350 0.00 0.00 0.31 0.00 0.00 0.00 0.29 0.26 0.20 0.00 1.06 0.22 0.44 0.00 0.00 0.34 0.00 0.00 0.00 0.19 0.43 0.41 0.30 0.27 0.57 0.00 0.33 0.59 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.35 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG5989 chr3L - chr3L_8595944_8596014 chr3L_8595954_8596014 chr3L_8596015_8596083;chr3L_8595878_8595943 100.00 100.00 100.00 98.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 98.96 100.00 100.00 100.00 100.00 100.00 100.00 98.41 100.00 100.00 100.00 98.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.39 98.55 100.00 100.00 K alternative_acceptor Psi,RI_chr2R_12752536_12752596,I_chr2R_12753387_12753659 chr2R - chr2R_12752536_12752596;chr2R_12752542_12752596 chr2R_12752539_12752596 chr2R_12752597_12752696;chr2R_12752436_12752535 70.00 63.64 58.33 65.00 55.56 81.82 81.82 66.67 76.19 66.67 66.67 73.08 85.71 66.67 78.57 63.64 66.67 71.43 75.00 73.68 66.67 58.82 60.00 60.00 NA 71.43 64.29 71.43 78.57 75.00 66.67 66.67 76.67 68.42 NA 71.43 70.00 75.00 63.64 71.74 66.67 65.52 70.00 73.68 87.50 71.43 64.29 71.43 66.67 70.00 72.73 75.00 68.75 75.00 72.22 72.73 80.00 68.42 K intron_retention ens,I_chr3L_4130719_4131120 chr3L - chr3L_4125080_4125135 chr3L_4125079_4125080;chr3L_4125135_4125136 chr3L_4124919_4125079;chr3L_4125136_4125500 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.47 0.00 0.00 0.53 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.44 0.61 1.35 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17683,I_chr2R_18774_18869,I_chr2R_19002_19060 chr2R + chr2R_18998_19064 chr2R_18997_18998;chr2R_19064_19065 chr2R_18902_18997;chr2R_19065_19124 100.00 97.37 96.30 98.04 100.00 100.00 96.30 100.00 100.00 100.00 96.43 98.15 100.00 96.88 97.30 100.00 100.00 100.00 96.97 100.00 95.45 100.00 100.00 100.00 100.00 100.00 98.41 100.00 97.06 96.30 98.18 100.00 100.00 98.31 100.00 100.00 100.00 100.00 100.00 97.92 94.12 98.00 100.00 97.14 95.45 100.00 91.43 100.00 98.46 100.00 95.45 100.00 100.00 96.00 100.00 96.67 97.44 96.55 K alternative_acceptor nej,RI_chrX_9578185_9581011 chrX - chrX_9575225_9575306 chrX_9575243_9575306 chrX_9575307_9575675;chrX_9571169_9575224 6.20 4.48 8.82 6.35 5.08 3.77 3.12 8.00 7.63 6.15 15.56 5.17 2.50 6.35 5.26 7.14 4.55 6.38 6.67 4.63 5.13 8.57 6.02 7.14 6.38 7.27 5.41 6.12 4.76 8.43 5.66 9.68 8.91 10.53 6.98 7.32 4.76 3.33 3.19 2.94 5.26 7.53 3.12 3.30 2.94 4.44 8.33 9.66 7.14 3.57 2.78 10.53 3.23 NA 9.09 6.25 10.00 8.89 K jcn_only_AD CaMKI,I_chr4_466377_467256,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,RI_chr4_467374_467424,RI_chr4_467482_467543,I_chr4_467862_471815,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_466592_467726;chr4_466275_467726;chr4_467662_467726;chr4_466798_467726;chr4_467273_467726 chr4_466377_467726 chr4_467727_467826;chr4_466269_466274 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention norpA,I_chrX_4219265_4219380 chrX + chrX_4251310_4251377 chrX_4251309_4251310;chrX_4251377_4251378 chrX_4251073_4251309;chrX_4251378_4251544 0.00 0.00 0.00 0.00 3.03 2.70 3.85 0.00 3.08 NA NA 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 4.44 0.00 0.00 2.44 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 4.55 0.00 0.00 0.00 NA 2.56 3.85 NA NA 4.65 0.00 0.00 0.00 K intron_retention CG1674,I_chr4_264634_265805 chr4 + chr4_265968_266029 chr4_265967_265968;chr4_266029_266030 chr4_265906_265967;chr4_266030_266167 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.25 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 98.85 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention e,I_chr3R_17055860_17056144 chr3R - chr3R_17056089_17056144 chr3R_17056088_17056089;chr3R_17056144_17056145 chr3R_17055622_17056088;chr3R_17056145_17056244 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA K alternative_acceptor akirin,I_chr3L_7363173_7364806,I_chr3L_7363177_7364806,I_chr3L_7363177_7364831,I_chr3L_7363211_7364831,I_chr3L_7363731_7364806,I_chr3L_7364126_7364806,RI_chr3L_7364737_7364806 chr3L + chr3L_7363177_7364831 chr3L_7363177_7364806 chr3L_7363111_7363176;chr3L_7364832_7364906 100.00 100.00 100.00 100.00 95.24 97.44 98.00 98.57 98.65 94.12 97.30 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 99.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 94.12 94.44 98.33 100.00 100.00 96.15 96.55 100.00 97.56 100.00 100.00 100.00 94.12 100.00 97.56 97.30 100.00 98.59 96.77 97.73 100.00 100.00 100.00 97.96 96.67 100.00 96.77 K intron_retention Ca-P60A,RI_chr2R_19820338_19820541,I_chr2R_19820338_19821424,CEI_chr2R_19820338_19821830,I_chr2R_19820338_19823289 chr2R - chr2R_19820338_19820765 chr2R_19820337_19820338;chr2R_19820765_19820766 chr2R_19820238_19820337;chr2R_19820766_19820779 16.67 NA 9.09 13.89 16.67 4.76 30.00 10.00 19.05 10.00 33.33 23.53 0.00 15.00 19.05 10.81 NA 23.53 13.04 16.67 22.22 74.19 18.18 25.00 41.67 16.67 16.67 11.76 18.52 20.00 17.65 NA 11.76 12.20 25.00 15.38 31.25 14.29 NA 9.68 30.77 16.28 NA 25.00 NA 15.00 NA 21.88 13.64 NA 4.76 6.25 NA NA 7.41 NA NA 12.50 K jcn_only_AA lig,I_chr2R_3959744_3959851,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3959744_3959867 chr2R_3959744_3959851 chr2R_3959644_3959743;chr2R_3959868_3959951 0.18 0.00 0.24 0.22 0.00 0.64 0.25 0.00 0.14 0.00 0.00 0.17 0.00 0.36 0.26 0.00 0.33 0.00 0.37 0.00 0.00 0.35 0.00 0.38 0.30 0.66 0.21 0.00 0.00 0.00 0.29 0.40 0.58 0.00 0.67 0.65 0.00 0.19 0.15 0.18 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.20 0.00 0.37 0.00 0.62 0.44 0.00 0.32 0.39 0.34 K intron_retention sta chrX - chrX_1376949_1377164 chrX_1376948_1376949;chrX_1377164_1377165 chrX_1376851_1376948;chrX_1377165_1377223 60.87 50.00 59.38 58.06 60.87 78.95 54.05 57.58 61.70 51.72 43.75 66.67 53.85 57.89 72.22 64.10 50.00 64.29 60.87 64.71 56.25 79.55 63.04 48.39 66.67 60.87 79.31 93.18 64.10 71.88 30.77 55.17 73.91 57.89 55.56 60.71 58.82 62.79 53.97 65.12 60.00 63.64 73.68 76.67 48.72 68.18 64.86 71.88 64.71 60.38 61.22 58.33 61.90 56.00 62.16 58.33 51.72 68.42 K jcn_only_AA CdGAPr chr2L - chr2L_19779331_19779399 chr2L_19779334_19779399 chr2L_19779400_19779503;chr2L_19779018_19779330 42.86 47.62 45.12 35.83 42.86 58.14 46.59 43.69 42.86 32.22 41.38 39.50 43.10 44.93 27.03 42.55 41.27 26.92 33.33 44.24 45.28 38.89 44.03 44.21 40.82 30.14 46.15 45.87 48.25 37.40 36.49 39.19 46.15 40.35 35.38 51.69 43.45 30.38 50.00 34.64 47.92 40.94 33.33 38.41 44.05 42.24 37.29 41.15 45.74 31.15 48.65 44.44 56.25 43.33 40.91 46.94 36.54 51.64 K intron_retention Arf79F,I_chr3L_22863166_22863946,I_chr3L_22863166_22864419,RI_chr3L_22863251_22863389,RI_chr3L_22863251_22863952,I_chr3L_22863251_22864009,I_chr3L_22863251_22864188,I_chr3L_22863251_22864501,I_chr3L_22863251_22864629,RI_chr3L_22863251_22864763,I_chr3L_22863251_22864866,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22863251_22865023 chr3L_22863250_22863251;chr3L_22865023_22865024 chr3L_22863151_22863250;chr3L_22865024_22865147 2.06 3.00 2.06 1.74 0.00 1.22 0.00 2.36 2.93 2.22 0.00 0.94 2.17 0.91 3.94 2.26 2.67 2.50 4.00 2.22 2.63 3.23 2.41 2.45 0.00 0.98 3.03 3.39 1.56 3.45 3.03 0.00 3.77 1.64 1.32 5.56 1.61 1.15 2.35 1.79 0.00 1.72 0.00 1.35 0.00 1.54 2.82 3.19 0.83 1.20 3.29 1.12 2.15 1.00 2.29 2.15 0.83 0.00 K jcn_only_AD achi,I_chr2R_8401767_8401934 chr2R - chr2R_8401767_8402280;chr2R_8401767_8401934 chr2R_8401767_8401848 chr2R_8401667_8401766;chr2R_8402281_8402519 4.00 4.00 NA 13.79 9.09 NA 4.76 3.70 8.11 NA NA 5.26 NA NA 11.54 11.36 13.04 NA 0.00 6.12 8.70 NA 2.70 0.00 0.00 4.17 NA NA 4.76 13.04 10.00 0.00 0.00 0.00 NA 0.00 6.06 NA 0.00 3.23 NA 5.26 0.00 NA 0.00 2.70 16.67 0.00 6.90 1.75 5.88 NA NA 0.00 0.00 0.00 0.00 7.69 K intron_retention CG18659,RI_chr2R_5013572_5014531,I_chr2R_5016147_5016997 chr2R - chr2R_5011129_5011193 chr2R_5011128_5011129;chr2R_5011193_5011194 chr2R_5010809_5011128;chr2R_5011194_5011644 100.00 98.36 100.00 100.00 97.96 98.15 99.07 99.11 99.32 100.00 98.00 100.00 100.00 98.67 100.00 100.00 100.00 100.00 100.00 99.51 100.00 99.19 100.00 100.00 97.67 100.00 98.89 98.51 97.87 100.00 100.00 98.99 100.00 99.07 100.00 100.00 97.59 100.00 97.40 100.00 100.00 100.00 100.00 98.48 99.12 100.00 99.09 99.28 99.33 98.96 99.05 100.00 100.00 98.86 98.63 100.00 100.00 99.30 K alternative_acceptor CG40191,I_chr2RHet_391475_391828,I_chr2RHet_392279_392824 chr2RHet + chr2RHet_391927_392824 chr2RHet_391927_391975 chr2RHet_391829_391926;chr2RHet_392825_392923 94.34 96.23 100.00 90.12 90.00 92.11 98.88 95.88 92.68 95.83 97.92 94.32 100.00 97.73 92.00 93.51 95.65 92.50 94.34 96.04 94.87 92.68 91.55 98.48 88.89 91.18 97.10 92.59 85.19 97.06 94.12 96.30 96.77 95.35 94.59 84.21 98.11 100.00 94.74 93.75 74.29 97.00 97.56 92.31 100.00 93.88 90.32 95.24 95.65 92.00 91.03 92.59 93.10 90.70 96.61 92.98 92.98 96.00 K alternative_donor CG7224 chr2L + chr2L_7999176_7999248;chr2L_7999168_7999248;chr2L_7999174_7999248 chr2L_7999170_7999248 chr2L_7999249_7999714;chr2L_7998934_7999167 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chr3L_19994894_19994949,CG7668,RI_chr3L_19995983_19996407 chr3L + chr3L_19996093_19996402 chr3L_19996092_19996093;chr3L_19996402_19996403 chr3L_19995858_19996092;chr3L_19996403_19996650 0.00 3.03 0.00 0.00 0.00 0.00 3.45 1.82 2.15 0.00 0.00 1.79 11.54 6.67 5.00 1.69 0.00 0.00 2.50 2.50 0.00 0.00 4.65 6.45 0.00 0.00 3.03 0.00 0.00 0.00 2.33 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.52 0.00 0.00 0.00 NA 0.00 0.00 3.23 3.45 3.70 N intron_retention CG32032 chr3L + chr3L_9086412_9086892 chr3L_9086411_9086412;chr3L_9086892_9086893 chr3L_9086163_9086411;chr3L_9086893_9087041 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG32795,I_chrX_2677459_2682526,I_chrX_2677729_2677799,I_chrX_2679163_2681784 chrX - chrX_2683412_2683778 chrX_2683473_2683778 chrX_2683779_2683818;chrX_2683271_2683411 3.88 NA NA NA NA NA NA NA 3.92 NA NA 12.50 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 8.33 NA NA NA NA NA NA NA 3.85 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD Khc,EI_chr2R_12157759_12157824 chr2R - chr2R_12157759_12158843 chr2R_12157759_12157824 chr2R_12157659_12157758;chr2R_12158844_12159487 1.92 1.29 2.13 0.86 0.67 0.73 0.42 0.90 1.71 3.15 0.78 0.72 1.52 3.79 1.84 0.57 4.00 3.85 1.31 1.32 0.00 8.33 1.23 0.00 2.48 1.63 2.08 5.71 4.67 1.53 10.18 2.26 2.01 2.09 1.69 1.96 2.64 1.88 3.18 3.74 2.17 0.86 0.00 2.29 1.25 1.92 0.00 2.35 1.18 2.50 2.79 2.61 5.75 2.83 2.56 0.72 0.92 3.30 N intron_retention CG17724,Kdm4B,seq chr2R - chr2R_9066519_9068494 chr2R_9066518_9066519;chr2R_9068494_9068495 chr2R_9063672_9066518;chr2R_9068495_9068814 31.25 NA NA NA NA NA NA 31.25 52.94 NA NA 33.33 NA NA NA NA NA NA NA NA NA 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA K alternative_donor RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522912_523360;chrX_522912_523215;chrX_522912_523414;chrX_522912_523323;chrX_522912_523389 chrX_522912_523194 chrX_522849_522911;chrX_523415_523436 1.29 1.74 1.74 1.08 1.20 1.06 2.45 0.76 1.52 0.91 2.90 0.96 1.23 1.25 1.12 1.29 3.23 1.32 2.47 0.60 3.64 1.96 2.59 1.75 2.22 3.64 3.67 1.82 0.84 1.10 1.03 0.81 0.54 1.22 2.78 2.08 1.61 2.11 0.71 0.38 0.96 0.90 3.23 0.82 0.28 0.93 1.64 0.39 2.22 4.08 5.15 2.41 1.20 0.88 0.97 1.67 1.78 0.17 K alternative_acceptor CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907784_9908531 chr2L_9907848_9908531 chr2L_9908532_9908619;chr2L_9907756_9907783 27.27 NA NA 52.63 NA NA 30.77 50.00 23.33 NA NA 37.50 36.36 27.27 NA 58.33 NA NA NA 21.74 NA 21.21 21.43 NA NA NA 7.14 NA 25.00 25.00 23.08 NA 50.00 35.71 16.67 17.65 17.65 NA NA 29.41 NA 43.75 NA 17.65 NA NA 20.00 NA 46.15 NA 42.86 NA NA NA 27.27 NA NA NA K jcn_only_AD CG10737 chr2R + chr2R_15062754_15063752;chr2R_15062814_15063752 chr2R_15062592_15063752 chr2R_15063753_15063852;chr2R_15062387_15062591 0.00 NA NA 5.00 NA NA 0.00 NA 3.33 NA NA NA NA NA NA NA NA NA NA 5.71 NA 3.57 NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA 5.00 0.00 NA NA NA NA NA NA NA 0.00 0.00 K cassette CG7408 chr3L + chr3L_17872349_17873229 chr3L_17872349_17872977;chr3L_17873165_17873229 chr3L_17872978_17873164 chr3L_17872262_17872348;chr3L_17873230_17873397 89.44 NA NA 70.00 NA 100.00 88.89 88.89 100.00 NA NA 60.00 100.00 83.33 80.00 90.00 NA 100.00 80.00 87.50 NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA 87.50 NA NA NA NA NA NA NA 90.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA 87.50 NA NA NA K alternative_donor I_chr3R_22696095_22697413,Rb97D chr3R - chr3R_22699721_22699792 chr3R_22699721_22699788 chr3R_22699582_22699720;chr3R_22699793_22700512 46.61 54.55 33.33 41.38 43.75 37.50 33.33 43.75 38.78 41.67 NA 42.86 57.14 50.00 48.00 46.15 NA 35.00 56.25 41.30 36.84 47.83 48.72 34.48 40.91 35.71 47.83 71.43 57.14 52.38 46.15 41.67 47.83 30.00 42.86 47.62 47.06 61.29 48.65 43.24 NA 42.50 36.36 60.87 52.17 47.62 33.33 50.00 39.13 55.56 51.72 56.25 47.06 55.56 38.89 50.00 59.09 37.50 K jcn_only_AA CG32982,I_chr2L_9127467_9148754,EF_chr2L_9135385_9148841,F_chr2L_9149162_9154658 chr2L + chr2L_9162709_9163140;chr2L_9162709_9163143 chr2L_9162709_9163294 chr2L_9162363_9162708;chr2L_9163295_9163398 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mop chr3L - chr3L_14763300_14763354 chr3L_14763299_14763300;chr3L_14763354_14763355 chr3L_14763112_14763299;chr3L_14763355_14763536 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 N jcn_only_AD mfrn,I_chr3R_23770737_23770817,I_chr3R_23771063_23771153,I_chr3R_23771063_23772599 chr3R - chr3R_23771063_23771137;chr3R_23771063_23772915 chr3R_23771063_23771153 chr3R_23770974_23771062;chr3R_23772916_23773724 1.61 2.44 2.56 3.12 1.72 1.56 1.55 4.82 0.57 2.04 1.18 1.61 3.39 1.72 0.00 0.00 0.00 1.67 3.90 1.81 0.00 4.11 2.67 1.47 3.33 3.33 3.48 0.87 1.18 0.88 5.16 3.49 0.00 3.67 6.58 1.96 0.00 1.87 0.60 1.74 0.00 0.70 1.85 0.78 0.00 0.78 3.00 1.17 3.20 2.68 3.05 0.00 0.00 0.00 0.00 1.10 0.00 0.00 K alternative_acceptor CG32344,RI_chr3L_321550_321914,I_chr3L_326540_326703,RI_chr3L_326725_326866 chr3L - chr3L_321361_321914;chr3L_321364_321914 chr3L_321550_321914 chr3L_321915_322014;chr3L_321242_321360 7.69 0.00 8.33 33.33 20.00 6.25 33.33 0.00 5.00 NA 11.11 12.00 15.38 7.69 0.00 8.70 NA 0.00 7.14 5.26 0.00 12.50 18.18 6.67 NA 8.33 0.00 12.50 14.29 0.00 7.69 0.00 5.88 10.00 8.33 0.00 11.11 0.00 10.00 14.29 10.53 4.76 0.00 NA 11.11 0.00 0.00 6.25 9.52 11.11 6.25 0.00 14.29 10.00 0.00 0.00 14.81 11.43 K alternative_acceptor qkr58E-2,I_chr2R_18305142_18305207 chr2R + chr2R_18305142_18305207 chr2R_18305142_18305197 chr2R_18305042_18305141;chr2R_18305208_18305307 96.41 94.44 95.00 100.00 100.00 100.00 97.06 95.35 97.92 95.00 93.33 97.50 100.00 93.75 94.74 93.02 95.24 100.00 89.29 97.92 100.00 96.67 95.83 96.15 100.00 95.24 96.00 93.33 96.15 92.00 96.15 100.00 100.00 96.88 100.00 100.00 95.00 100.00 100.00 97.14 100.00 97.67 93.33 100.00 94.12 97.37 100.00 96.00 97.56 95.65 95.65 100.00 95.24 100.00 NA 92.86 96.15 89.19 N jcn_only_AD Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824086_11824525;chr2R_11824086_11825790 chr2R_11824086_11824186 chr2R_11823989_11824085 17.19 18.75 NA 13.95 NA NA NA NA 10.91 NA NA 52.17 NA NA NA 44.44 NA NA NA 8.97 NA 45.83 12.00 16.67 31.03 NA 17.24 34.48 42.86 28.00 27.27 9.52 40.74 NA 15.38 20.00 8.57 9.09 5.71 19.23 NA 21.05 NA 35.56 30.43 22.50 18.60 31.25 9.68 7.32 12.12 12.12 6.98 5.41 NA 11.63 4.00 17.14 K intron_retention Mef2,I_chr2R_5804418_5804961,I_chr2R_5806354_5806933,CREFI_chr2R_5809509_5845628,I_chr2R_5814375_5816404,RI_chr2R_5846889_5846948 chr2R - chr2R_5804397_5805442 chr2R_5804396_5804397;chr2R_5805442_5805443 chr2R_5804318_5804396;chr2R_5805443_5805858 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.09 NA 0.00 0.00 5.56 7.14 NA NA 0.00 0.00 NA NA NA 0.00 NA NA 12.50 5.41 NA 0.00 0.00 NA 14.29 NA NA 0.00 NA NA 0.00 6.67 NA NA NA NA NA NA NA NA NA K alternative_donor CG13568,I_chr2R_19941242_19941302 chr2R - chr2R_19941242_19941312 chr2R_19941242_19941302 chr2R_19941202_19941241;chr2R_19941313_19941402 35.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 35.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette Hrb27C,I_chr2L_6924401_6924743 chr2L + chr2L_6921441_6923783;chr2L_6921074_6923783;chr2L_6920862_6923783 chr2L_6921441_6922730,chr2L_6921074_6922730,chr2L_6920862_6922730;chr2L_6922827_6923783 chr2L_6922731_6922826 chr2L_6920793_6920861;chr2L_6923784_6924400 74.34 81.21 69.89 75.44 71.20 69.54 67.27 76.88 80.18 NA 70.87 65.69 69.83 79.90 70.05 68.81 74.61 67.74 76.03 95.57 68.18 62.37 74.75 77.61 76.19 66.86 81.88 80.95 60.00 70.16 76.29 73.91 68.37 75.18 80.00 73.27 70.53 74.51 79.17 73.20 74.36 69.72 74.31 74.24 69.70 74.71 75.36 65.25 77.95 80.88 77.78 75.41 62.86 75.00 70.12 77.61 76.25 65.77 K intron_retention dom,I_chr2R_17217595_17218598,I_chr2R_17228865_17228924 chr2R + chr2R_17224969_17225029 chr2R_17224968_17224969;chr2R_17225029_17225030 chr2R_17224933_17224968;chr2R_17225030_17228125 2.66 0.00 NA 0.00 NA NA 10.53 12.00 12.20 0.00 12.50 0.00 NA NA 12.50 11.11 NA NA NA 8.11 0.00 12.90 2.17 0.00 NA NA 10.81 17.86 6.67 3.23 NA NA 0.00 8.00 0.00 2.94 7.55 0.00 6.25 11.63 0.00 2.00 0.00 0.00 NA 0.00 0.00 5.00 3.57 0.00 2.38 0.00 7.69 0.00 7.69 0.00 0.00 10.81 K jcn_only_AA CG14411 chrX + chrX_14726994_14727180 chrX_14726994_14727176 chrX_14726671_14726993;chrX_14727181_14727210 99.38 100.00 100.00 98.80 98.31 100.00 98.94 98.17 98.48 100.00 98.39 100.00 98.21 97.37 100.00 98.48 98.04 100.00 100.00 99.14 100.00 99.12 100.00 99.42 100.00 100.00 98.35 98.72 99.38 99.14 100.00 97.64 99.43 100.00 100.00 99.07 100.00 100.00 100.00 100.00 100.00 98.77 100.00 98.75 99.36 100.00 98.08 98.80 99.19 99.38 99.28 98.73 100.00 100.00 96.43 100.00 100.00 99.33 K intron_retention I_chr2L_5050018_5050955,I_chr2L_5050249_5050657,eIF-3p40,Rpn11 chr2L - chr2L_5051571_5051636 chr2L_5051570_5051571;chr2L_5051636_5051637 chr2L_5051014_5051570;chr2L_5051637_5052314 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention F_chrX_15764251_15765393,CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15764432_15765393 chrX_15764431_15764432;chrX_15765393_15765394 chrX_15764292_15764431;chrX_15765394_15765493 72.73 66.67 61.54 76.19 NA 63.64 79.17 76.67 72.73 NA NA 78.95 90.91 65.00 90.00 72.00 78.57 50.00 86.67 81.82 NA NA 72.73 55.56 NA 72.73 54.55 NA NA NA 58.82 NA 87.50 73.08 77.78 NA NA NA 87.50 76.47 NA 64.00 52.94 NA NA 60.00 66.67 80.00 63.16 NA 61.54 NA NA NA 69.23 NA NA NA K jcn_only_AA mr,I_chr2R_19861985_19862040 chr2R + chr2R_19861224_19861309 chr2R_19861224_19861282 chr2R_19861043_19861223;chr2R_19861310_19861984 100.00 100.00 NA 100.00 NA 95.65 100.00 96.61 100.00 NA NA 100.00 100.00 100.00 100.00 98.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 NA 100.00 NA 97.06 NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 96.15 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 97.22 NA 96.15 100.00 K jcn_only_AD CG31998,I_chr4_225419_226294 chr4 - chr4_225419_226474;chr4_225419_226366 chr4_225419_226284 chr4_225319_225418;chr4_226475_226518 3.13 NA NA 1.54 NA NA 4.84 0.00 2.50 NA NA 2.50 0.00 3.85 NA 5.88 NA NA 5.00 0.00 NA NA 3.33 NA NA NA NA NA NA NA NA NA NA 2.94 NA 0.00 NA NA NA NA NA 6.67 NA NA NA NA NA NA 4.08 NA NA NA NA NA 4.55 NA NA NA K alternative_acceptor CG9791 chr3R + chr3R_137697_137762 chr3R_137697_137751 chr3R_137378_137696;chr3R_137763_138036 88.19 87.50 NA 80.00 NA NA 76.92 87.50 82.61 NA 75.00 84.21 88.89 88.89 72.73 93.33 100.00 NA 76.92 80.00 90.00 88.89 55.56 90.00 NA NA 100.00 NA NA 87.50 66.67 NA 92.86 92.31 NA NA 100.00 NA 91.67 93.75 NA 80.95 78.57 88.89 NA NA NA 90.91 95.24 NA 88.89 NA NA NA 83.33 NA NA 85.71 K jcn_only_AD RpL35A,I_chr3R_1292099_1292701,I_chr3R_1292125_1292701 chr3R - chr3R_1292731_1292790 chr3R_1292731_1292786 chr3R_1292709_1292730;chr3R_1292791_1292801 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 K intron_retention CG9795,RI_chr3R_149612_150058,I_chr3R_150391_150451 chr3R + chr3R_149887_150058 chr3R_149886_149887;chr3R_150058_150059 chr3R_149675_149886;chr3R_150059_150064 0.00 0.00 0.00 7.41 0.00 NA 0.00 0.00 0.00 NA NA 6.45 NA 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 6.25 NA 0.00 0.00 0.00 NA 2.94 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 K cassette yrt chr3R - chr3R_9255492_9256644 chr3R_9255492_9255914;chr3R_9256473_9256644 chr3R_9255915_9256472 chr3R_9254589_9255491;chr3R_9256645_9256811 96.00 97.50 97.06 98.15 100.00 96.77 91.84 92.45 94.74 96.97 96.00 95.31 92.59 95.65 96.97 97.44 100.00 93.10 93.75 98.75 96.30 98.15 98.57 91.94 97.37 96.88 92.31 97.06 93.02 97.78 93.10 94.74 95.71 93.33 94.00 100.00 95.59 100.00 95.65 92.50 92.68 97.50 96.55 97.96 90.62 93.22 100.00 94.83 89.86 96.43 96.30 96.77 97.30 91.30 94.87 97.62 95.45 91.11 N intron_retention RpL6 chr3R - chr3R_27421324_27421603 chr3R_27421323_27421324;chr3R_27421603_27421604 chr3R_27421243_27421323 59.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 18.18 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention twin,I_chr3R_20032081_20032197,RI_chr3R_20032242_20045321,CG17786 chr3R - chr3R_20025674_20045321 chr3R_20025673_20025674;chr3R_20045321_20045322 chr3R_20025605_20025673;chr3R_20045322_20045421 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 15.62 NA 0.00 0.00 6.45 0.00 0.00 0.00 11.76 NA NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 10.00 0.00 4.76 NA K intron_retention CG4004,RI_chrX_12640753_12640901 chrX + chrX_12639901_12640901 chrX_12639900_12639901;chrX_12640901_12640902 chrX_12639371_12639900;chrX_12640902_12641001 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K alternative_donor CG9572 chrX + chrX_20044159_20044630 chrX_20044270_20044630 chrX_20044631_20044869;chrX_20044119_20044158 92.86 100.00 100.00 100.00 100.00 100.00 90.91 100.00 95.45 85.71 100.00 100.00 100.00 87.50 100.00 100.00 83.33 94.74 100.00 96.00 100.00 90.91 81.25 92.31 91.67 88.89 88.89 NA 100.00 91.67 87.50 92.86 90.00 100.00 88.89 90.00 86.36 100.00 85.00 94.44 90.91 100.00 NA 90.48 86.36 94.74 81.82 90.91 92.31 94.12 80.00 100.00 87.50 90.00 90.00 92.86 100.00 100.00 K intron_retention CG9953 chr3L + chr3L_6963920_6963981 chr3L_6963919_6963920;chr3L_6963981_6963982 chr3L_6963781_6963919;chr3L_6963982_6964453 0.07 0.39 0.38 0.80 0.00 0.00 0.68 0.00 0.09 0.49 0.27 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.07 0.00 0.29 0.20 0.22 1.17 1.27 0.93 1.02 0.00 0.00 2.31 0.00 0.00 0.00 0.00 2.96 0.58 0.00 0.30 0.00 1.21 0.22 0.28 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.68 0.18 0.29 0.00 0.46 0.00 0.31 K intron_retention bun,I_chr2L_12520177_12536274,I_chr2L_12537393_12537634,RI_chr2L_12540901_12546409 chr2L - chr2L_12539487_12540476 chr2L_12539486_12539487;chr2L_12540476_12540477 chr2L_12537746_12539486;chr2L_12540477_12540722 100.00 100.00 97.92 97.10 97.67 98.11 100.00 100.00 99.16 100.00 100.00 100.00 97.67 100.00 100.00 100.00 97.96 97.96 98.11 97.32 97.44 100.00 98.68 100.00 97.87 100.00 100.00 100.00 97.30 100.00 97.78 100.00 98.59 100.00 100.00 100.00 98.84 100.00 98.85 98.73 100.00 99.07 97.37 100.00 96.30 100.00 100.00 98.68 98.82 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor l(2)tid chr2R + chr2R_19596011_19596157 chr2R_19596011_19596152 chr2R_19594625_19596010;chr2R_19596158_19596758 82.61 78.79 82.61 85.00 78.95 82.35 75.00 78.57 82.22 80.00 95.00 89.19 100.00 78.57 61.29 85.71 75.00 80.95 83.33 80.00 94.12 86.67 82.35 73.17 82.61 87.50 95.00 82.14 94.44 75.00 71.43 76.67 80.33 86.36 89.47 80.95 86.27 85.19 77.50 78.43 83.33 80.85 87.50 82.86 80.00 78.57 82.98 83.72 86.67 85.71 89.29 87.50 80.00 91.11 83.33 92.11 80.33 69.57 N cassette CG17018 chr2L + chr2L_22365325_22367235 chr2L_22365325_22365414;chr2L_22367174_22367235 chr2L_22365415_22367173 chr2L_22365205_22365324;chr2L_22367236_22367497 100.00 100.00 100.00 98.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG4080,I_chr3L_9381480_9381541 chr3L - chr3L_9382219_9383101 chr3L_9382218_9382219;chr3L_9383101_9383102 chr3L_9381542_9382218;chr3L_9383102_9383222 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention wdb,RI_chr3R_23406048_23407402 chr3R - chr3R_23392518_23392582 chr3R_23392517_23392518;chr3R_23392582_23392583 chr3R_23392327_23392517;chr3R_23392583_23392777 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CDC45L,I_chrX_923373_923449 chrX - chrX_923398_923449 chrX_923397_923398;chrX_923449_923450 chrX_922320_923397;chrX_923450_923549 2.56 10.53 5.88 13.04 NA NA 0.00 4.17 0.00 0.00 NA 6.25 NA NA 0.00 4.17 NA NA NA 5.00 0.00 0.00 0.00 0.00 15.00 6.25 19.05 NA 0.00 0.00 NA NA 18.18 20.00 0.00 NA 12.50 7.69 2.56 6.67 NA 0.00 14.29 0.00 0.00 0.00 8.70 0.00 7.69 0.00 0.00 11.11 NA 0.00 11.76 3.85 0.00 0.00 K alternative_acceptor Not1,I_chr2R_5463624_5463682 chr2R - chr2R_5463621_5463682 chr2R_5463624_5463682 chr2R_5463683_5463782;chr2R_5463524_5463620 4.21 4.12 2.14 4.93 3.97 5.00 2.88 4.07 4.23 3.70 5.15 4.73 5.30 5.61 3.73 3.23 4.41 4.39 3.73 4.26 3.81 3.36 4.51 7.26 5.36 4.00 5.03 7.04 4.76 5.49 3.33 4.00 3.47 3.50 6.19 2.59 4.21 2.73 4.65 2.15 5.88 4.89 4.24 3.14 0.00 2.50 2.56 3.85 6.28 2.22 4.30 5.75 5.56 0.00 3.97 4.65 4.55 3.70 K intron_retention CG10543 chr2R + chr2R_16891600_16891657 chr2R_16891599_16891600;chr2R_16891657_16891658 chr2R_16891145_16891599;chr2R_16891658_16891766 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.77 9.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD Lag1,RI_chrX_6153758_6153930,I_chrX_6153758_6155077,RI_chrX_6153758_6161036,I_chrX_6160907_6161036 chrX - chrX_6153758_6154631;chrX_6153758_6153930;chrX_6153758_6161036;chrX_6153758_6154193;chrX_6153758_6154358;chrX_6153758_6160439 chrX_6153758_6155077 chrX_6153658_6153757;chrX_6161037_6161136 0.31 0.26 0.26 0.00 0.31 0.00 0.21 0.59 0.35 0.00 0.00 0.30 0.00 0.72 0.00 0.46 0.66 0.49 1.39 0.33 0.24 0.66 0.38 0.00 0.30 1.94 0.22 0.82 0.35 0.64 1.76 0.48 0.86 0.18 0.00 0.28 0.26 0.00 0.46 0.46 0.94 0.00 0.00 0.43 0.99 0.00 0.00 0.36 0.50 0.00 0.31 0.32 0.00 0.30 0.23 0.30 0.60 1.23 K alternative_donor NaCP60E,I_chr2R_20805053_20805170 chr2R + chr2R_20805101_20805170;chr2R_20805053_20805170 chr2R_20805005_20805170 chr2R_20805171_20805270;chr2R_20804953_20805004 0.00 0.00 NA 0.00 NA NA NA 0.00 9.09 NA NA 9.09 NA NA NA NA 20.00 0.00 0.00 0.00 NA 0.00 16.67 16.67 NA NA NA NA NA NA 0.00 20.00 12.50 16.67 0.00 14.29 0.00 NA 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 14.29 NA NA NA NA 0.00 K cassette sno chrX - chrX_13094938_13097742 chrX_13094938_13096772;chrX_13097091_13097742 chrX_13096773_13097090 chrX_13094500_13094937;chrX_13097743_13098183 4.00 4.35 4.00 4.88 0.00 3.57 4.17 2.08 0.00 3.03 4.17 4.44 0.00 0.00 0.00 0.00 3.45 0.00 0.00 17.14 0.00 9.68 5.71 12.50 10.00 0.00 3.45 5.88 4.76 8.33 0.00 NA 7.41 1.89 4.55 15.38 5.41 4.17 6.45 12.00 NA 3.77 4.76 3.85 NA NA NA 5.56 0.00 0.00 5.88 0.00 NA NA 0.00 NA NA NA K alternative_donor CG31431 chr3R + chr3R_17697398_17697703 chr3R_17697438_17697703 chr3R_17697704_17697862;chr3R_17697369_17697397 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9003790_9004854 chrX_9003789_9003790;chrX_9004854_9004855 chrX_9003721_9003789;chrX_9004855_9004862 54.20 NA NA 50.00 NA NA 54.55 66.67 54.55 NA NA 40.00 NA 41.67 NA 52.63 41.67 NA 37.50 53.85 NA 90.91 77.78 46.67 90.91 47.06 NA NA NA 63.64 42.86 NA 93.75 52.17 77.78 NA NA NA NA 85.71 90.00 47.37 63.64 NA NA NA NA 91.67 53.33 NA 63.64 NA NA NA 41.67 NA NA NA K jcn_only_AA sgg,I_chrX_2528059_2528637,I_chrX_2528131_2535622,RI_chrX_2528212_2535830,I_chrX_2528367_2535622,I_chrX_2528472_2535622,I_chrX_2536127_2563666,I_chrX_2563342_2563666,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2528059_2528868;chrX_2528059_2535830;chrX_2528059_2535622 chrX_2528059_2528859 chrX_2528052_2528058 2.78 9.09 2.78 2.17 NA NA 14.29 0.00 2.60 NA NA 0.00 6.90 6.45 7.41 0.00 NA 10.00 0.00 4.17 NA NA 9.68 9.09 NA 0.00 NA NA NA 0.00 8.82 NA 0.00 0.00 NA NA 20.00 NA NA 0.00 NA 4.55 0.00 NA NA NA NA NA 3.12 NA 0.00 4.55 NA NA 0.00 NA NA NA K alternative_donor I_chr2L_13965397_13965694,nimB3,RI_chr2L_13967695_13967746 chr2L - chr2L_13967695_13967750 chr2L_13967695_13967746 chr2L_13967595_13967694;chr2L_13967751_13967841 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 3.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 2.86 1.85 1.09 2.78 0.00 0.00 0.00 0.00 0.00 0.00 1.32 6.67 0.00 5.71 0.00 0.00 0.00 0.00 0.00 1.61 0.00 1.18 0.00 1.98 0.00 0.00 0.00 0.00 1.65 0.00 0.00 3.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.96 K jcn_only_AA Usp7,I_chrX_11919055_11919146,I_chrX_11922059_11922456 chrX - chrX_11919079_11919146;chrX_11919091_11919146 chrX_11919055_11919146 chrX_11919147_11919211;chrX_11918989_11919054 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.48 1.32 0.00 0.00 0.71 0.00 0.00 0.00 0.78 0.98 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.98 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 1.25 0.00 1.49 0.00 0.00 0.00 0.00 1.28 1.72 0.00 0.54 0.00 0.78 0.00 K cassette arm,I_chrX_1793073_1794406,RI_chrX_1795648_1795745,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1786153_1788540 chrX_1786153_1787435;chrX_1787533_1788540 chrX_1787436_1787532 chrX_1785434_1786152;chrX_1788541_1788813 100.00 99.72 100.00 100.00 100.00 100.00 99.27 100.00 100.00 100.00 99.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.79 100.00 100.00 100.00 99.70 100.00 99.58 99.27 100.00 100.00 100.00 99.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.60 99.72 98.83 100.00 100.00 100.00 100.00 99.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG6750,I_chr2L_10732122_10732185 chr2L - chr2L_10732122_10732185 chr2L_10732126_10732185 chr2L_10732186_10732285;chr2L_10732022_10732121 99.40 98.81 99.04 99.66 99.30 100.00 100.00 99.12 99.40 95.93 99.34 100.00 99.15 100.00 100.00 100.00 100.00 99.43 99.36 99.79 98.72 98.52 99.39 99.66 99.38 100.00 99.32 98.57 100.00 100.00 97.27 99.56 99.59 99.56 99.38 99.09 99.63 99.59 100.00 99.70 100.00 98.81 99.32 99.54 99.26 99.74 99.68 99.13 100.00 99.25 98.85 100.00 98.70 98.90 100.00 99.33 99.22 99.12 K jcn_only_AD CG5466,CI_chr3R_16445355_16445583 chr3R + chr3R_16445351_16445583 chr3R_16445355_16445583 chr3R_16445584_16445683;chr3R_16445255_16445350 0.00 NA NA NA NA NA NA NA 12.50 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 5.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 3.12 NA NA 11.54 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention Tao-1,E_chrX_19467010_19469645 chrX - chrX_19467498_19469390 chrX_19467497_19467498;chrX_19469390_19469391 chrX_19467324_19467497;chrX_19469391_19470002 6.55 5.46 4.50 8.65 5.70 6.38 8.02 1.45 4.63 12.98 8.50 11.33 3.64 4.10 4.64 4.71 4.41 6.67 2.48 5.49 5.84 31.76 7.76 5.50 9.70 7.38 11.43 18.64 16.55 6.81 7.69 11.11 10.24 5.22 6.92 5.48 8.31 7.96 7.31 8.94 15.19 5.20 5.19 7.65 5.52 6.21 4.91 6.40 4.44 8.90 6.70 6.03 3.67 8.80 6.55 6.29 6.67 3.62 K intron_retention yrt chr3R - chr3R_9256473_9256644 chr3R_9256472_9256473;chr3R_9256644_9256645 chr3R_9255915_9256472;chr3R_9256645_9256811 4.94 7.69 4.17 6.49 10.00 8.57 1.85 4.76 6.67 0.00 3.12 8.97 5.26 11.11 8.82 2.22 7.69 2.94 5.56 5.88 0.00 3.57 4.94 4.92 5.13 0.00 8.11 10.34 11.54 3.33 15.15 7.84 6.67 4.23 1.85 4.76 6.17 5.00 3.49 9.30 4.17 5.05 2.63 6.35 0.00 3.03 2.99 9.72 5.26 1.67 3.45 11.76 2.86 0.00 4.65 5.56 2.70 4.44 K alternative_donor tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5960163;chr3R_5959310_5960101;chr3R_5959310_5960041;chr3R_5959310_5959789;chr3R_5959310_5960182;chr3R_5959310_5960026;chr3R_5959310_5960158;chr3R_5959310_5959679 chr3R_5959310_5960049 chr3R_5958937_5959309;chr3R_5960183_5960224 0.00 0.00 0.00 8.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 K cassette ens,I_chr3L_4130719_4131120 chr3L - chr3L_4127163_4130388;chr3L_4128974_4131120;chr3L_4127163_4131120 chr3L_4127163_4129650,chr3L_4128974_4129650;chr3L_4129792_4130388,chr3L_4129792_4131120 chr3L_4129651_4129791 chr3L_4126989_4127162;chr3L_4131121_4131220 84.95 88.00 89.66 75.13 90.82 94.64 86.47 88.20 86.61 77.66 90.82 91.10 77.78 86.54 85.83 76.92 90.38 80.53 88.46 98.21 85.42 81.22 87.98 84.66 84.38 78.05 82.50 79.51 72.62 77.51 84.03 81.58 75.68 87.71 79.70 81.82 88.50 87.58 81.82 81.34 81.63 83.78 82.29 84.94 78.40 82.30 89.69 84.95 86.32 77.78 86.84 88.39 91.03 81.33 90.30 85.29 88.71 85.26 K alternative_acceptor CG6701,RI_chr2R_9866395_9866446,RI_chr2R_9866896_9867532 chr2R - chr2R_9866395_9866446;chr2R_9865335_9866446 chr2R_9865355_9866446 chr2R_9866447_9866546;chr2R_9865150_9865334 96.49 94.74 97.10 91.30 98.55 97.18 93.39 95.45 95.62 94.44 96.55 96.49 94.59 97.26 97.67 93.88 96.77 97.10 95.06 96.90 96.30 97.10 95.95 98.36 95.12 97.65 92.54 91.84 96.36 96.43 90.36 100.00 96.49 95.45 95.12 93.75 95.65 96.15 98.46 95.24 96.77 97.96 96.61 96.97 100.00 96.77 100.00 98.51 95.20 92.00 96.43 97.37 100.00 100.00 96.59 95.65 100.00 97.37 K cassette Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4847655_4849003 chrX_4847655_4848167;chrX_4848658_4849003 chrX_4848168_4848657 chrX_4847526_4847654;chrX_4849004_4849551 98.18 98.08 100.00 96.49 100.00 98.11 95.59 94.29 99.09 98.36 97.14 98.68 97.62 100.00 98.18 100.00 100.00 97.62 98.00 100.00 97.83 70.31 95.70 100.00 97.87 90.24 96.92 100.00 96.55 98.48 97.06 97.96 98.84 98.72 98.11 97.83 98.78 98.28 97.73 100.00 94.83 97.09 100.00 98.59 98.67 98.80 98.41 98.89 98.82 98.33 97.56 97.22 97.67 95.92 98.31 98.11 100.00 100.00 K jcn_only_AD Rga,I_chr3R_1436346_1436552,I_chr3R_1436346_1437602,I_chr3R_1436346_1437897,Spec2 chr3R - chr3R_1436346_1437897;chr3R_1436346_1437791 chr3R_1436346_1436552 chr3R_1436246_1436345;chr3R_1437898_1437963 0.00 0.00 0.00 0.00 0.00 1.22 2.91 0.00 0.00 0.00 0.00 0.65 0.00 0.00 1.41 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.92 1.82 0.00 1.05 0.00 0.00 0.00 0.00 0.00 1.01 1.45 0.00 0.00 1.49 1.89 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.71 1.39 0.00 0.64 0.00 0.00 0.00 2.56 0.00 0.00 0.00 1.30 0.54 K intron_retention Csk,I_chr3R_7463337_7463512,I_chr3R_7468917_7472437,I_chr3R_7468917_7472509,I_chr3R_7468928_7472509 chr3R - chr3R_7463337_7467997 chr3R_7463336_7463337;chr3R_7467997_7467998 chr3R_7463237_7463336;chr3R_7467998_7468853 0.00 1.43 0.00 2.78 0.00 0.00 4.00 2.90 3.28 1.75 0.00 2.38 5.71 4.44 0.00 0.00 0.00 5.13 0.00 1.68 0.00 3.95 2.05 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 6.41 0.00 0.00 0.00 0.98 0.00 2.47 0.00 2.04 0.00 3.66 0.00 2.27 0.00 1.59 3.49 0.00 1.94 2.74 0.00 0.00 0.00 0.00 0.00 3.23 K jcn_only_AA CG14442,RI_chrX_6586052_6586105,I_chrX_6586147_6586435 chrX - chrX_6585388_6586435 chrX_6586147_6586435 chrX_6586436_6586535;chrX_6583705_6585387 0.00 1.12 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 1.49 2.22 0.00 1.67 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 1.54 1.59 0.00 0.00 1.27 0.00 K jcn_only_AD Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2364640;chr2L_2361586_2364480;chr2L_2361586_2364836;chr2L_2361586_2365060;chr2L_2361586_2364302;chr2L_2361586_2364594;chr2L_2361586_2364889 chr2L_2361586_2364312 chr2L_2361486_2361585;chr2L_2365061_2365065 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor ire-1,FI_chr3R_15689914_15690042 chr3R - chr3R_15683407_15686368 chr3R_15683407_15686212 chr3R_15682963_15683406;chr3R_15686369_15686483 26.53 26.58 28.24 31.82 28.79 27.96 23.53 27.86 27.33 11.70 31.03 28.25 17.91 21.79 28.00 20.00 22.03 38.46 23.26 21.67 33.80 21.43 20.00 26.74 25.58 25.00 27.19 29.79 34.87 16.42 26.67 29.03 17.46 24.79 19.10 24.72 21.09 30.67 22.96 22.09 17.60 28.85 28.07 19.17 30.30 27.78 32.79 20.81 25.31 31.75 20.79 24.14 25.49 40.00 20.93 30.77 33.33 26.53 K jcn_only_AA dlg1,I_chrX_11298230_11299306 chrX + chrX_11283815_11284263 chrX_11283815_11284208 chrX_11283738_11283814;chrX_11284264_11284573 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 4.00 NA NA NA NA 0.00 NA NA 0.00 8.70 NA NA NA NA NA 0.00 0.00 NA NA NA 4.08 NA 0.00 NA 3.85 NA NA NA 0.00 5.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor Mitf,REI_chr4_1223922_1223965,I_chr4_1225890_1225947 chr4 + chr4_1223922_1224042;chr4_1223922_1223965 chr4_1223922_1223985 chr4_1223822_1223921;chr4_1224043_1224065 83.33 83.33 88.89 91.67 60.00 72.22 90.91 86.11 82.93 88.89 78.57 88.89 88.89 93.33 76.47 81.82 90.00 80.00 92.31 85.71 84.62 87.50 64.29 77.78 71.43 91.67 61.90 NA 85.71 NA 72.73 88.89 81.82 76.92 71.43 83.33 NA NA 62.50 92.31 77.78 84.38 85.71 90.91 NA 70.00 70.00 91.67 86.67 75.00 80.00 88.89 NA NA 80.00 83.33 83.33 76.92 K jcn_only_AD Paip2,I_chr3R_8809774_8809832 chr3R + chr3R_8809770_8809832 chr3R_8809774_8809832 chr3R_8809833_8809932;chr3R_8809674_8809769 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.72 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.63 0.42 0.93 0.00 0.00 0.00 1.05 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.36 K jcn_only_AD F_chrX_15764251_15765393,CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15764432_15765393;chrX_15764522_15765393;chrX_15764620_15765393;chrX_15764599_15765393 chrX_15764247_15765393 chrX_15765394_15765493;chrX_15764236_15764246 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention Rab1,I_chr3R_17094214_17094492,I_chr3R_17099005_17099062 chr3R - chr3R_17092868_17092947 chr3R_17092867_17092868;chr3R_17092947_17092948 chr3R_17092664_17092867;chr3R_17092948_17093112 0.46 0.53 0.55 0.74 0.28 0.24 0.57 0.62 0.61 0.28 0.27 0.57 0.45 0.57 0.42 0.87 0.62 0.52 0.00 0.42 0.66 0.27 0.64 0.60 0.26 0.42 0.70 2.09 0.46 0.33 0.52 0.41 0.35 0.34 0.40 0.42 0.65 0.49 0.24 0.49 0.56 0.59 0.88 0.49 0.38 0.40 0.29 0.35 0.39 0.59 0.53 0.32 0.24 0.57 0.59 0.40 0.38 0.41 K jcn_only_AD CaMKI,I_chr4_466377_467256,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,RI_chr4_467374_467424,RI_chr4_467482_467543,I_chr4_467862_471815,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_466592_467726;chr4_466275_467726;chr4_466377_467726;chr4_467662_467726;chr4_467273_467726 chr4_466798_467726 chr4_467727_467826;chr4_466269_466274 0.00 5.00 NA 6.45 NA 0.00 0.00 5.45 0.00 NA NA 0.00 0.00 4.76 NA 2.50 4.35 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 3.03 0.00 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention armi,I_chr3L_3466623_3467559 chr3L + chr3L_3463291_3463356 chr3L_3463290_3463291;chr3L_3463356_3463357 chr3L_3462862_3463290;chr3L_3463357_3463959 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.82 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention dia chr2L + chr2L_20758664_20760524 chr2L_20758663_20758664;chr2L_20760524_20760525 chr2L_20758126_20758663;chr2L_20760525_20760841 0.00 0.00 5.88 0.00 NA 0.00 6.25 0.00 4.65 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 NA NA NA NA NA NA 6.90 NA 0.00 NA NA NA 0.00 NA NA NA K jcn_only_AD akirin,I_chr3L_7363173_7364806,I_chr3L_7363177_7364806,I_chr3L_7363177_7364831,I_chr3L_7363211_7364831,I_chr3L_7363731_7364806,I_chr3L_7364126_7364806,RI_chr3L_7364737_7364806 chr3L + chr3L_7363177_7364831;chr3L_7363169_7364831 chr3L_7363211_7364831 chr3L_7364832_7364906;chr3L_7363111_7363168 5.00 NA NA NA NA NA NA 4.55 5.00 NA NA 4.17 5.00 4.35 NA 6.38 NA NA NA 3.23 NA 8.70 4.76 9.09 NA NA NA 4.76 NA 7.89 0.00 NA 6.15 8.00 NA NA 12.00 NA NA 5.56 NA 6.67 NA NA NA 4.76 NA NA 10.87 4.88 4.55 NA NA NA NA NA NA NA K alternative_last_exon hts,I_chr2R_15286599_15294119,I_chr2R_15293594_15294119,RI_chr2R_15294446_15295345,I_chr2R_15294825_15295345,I_chr2R_15295410_15295479,I_chr2R_15311185_15312327,I_chr2R_15311303_15312026 chr2R - chr2R_15294825_15295345;chr2R_15288861_15295345;chr2R_15294662_15295345;chr2R_15286599_15295345 chr2R_15293594_15295345 chr2R_15287023_15288860;chr2R_15294405_15294661;chr2R_15286527_15286598 chr2R_15293525_15293593 chr2R_15295346_15295409 27.00 25.00 23.60 25.23 14.81 22.47 10.96 24.43 27.00 48.15 19.15 24.30 7.81 17.50 18.60 16.30 16.95 17.11 17.11 20.25 27.87 36.84 40.82 37.50 33.90 15.19 27.47 17.50 10.87 33.33 24.00 29.31 29.87 22.48 34.48 37.66 25.68 37.10 33.04 32.28 38.98 26.79 10.45 27.78 22.39 37.61 34.25 28.36 23.76 38.03 41.03 29.03 30.99 32.79 20.47 34.62 28.57 35.65 K intron_retention RpL5,I_chr2L_22428750_22428846 chr2L - chr2L_22429111_22429268 chr2L_22429110_22429111;chr2L_22429268_22429269 chr2L_22428847_22429110;chr2L_22429269_22429293 0.15 0.12 0.17 0.05 0.08 0.12 0.08 0.12 0.10 0.17 0.04 0.15 0.16 0.20 0.12 0.14 0.08 0.08 0.13 0.07 0.15 0.14 0.35 0.17 0.12 0.12 0.77 0.76 0.11 0.47 0.14 0.37 0.93 0.15 0.34 0.45 0.05 0.14 0.19 0.29 1.29 0.16 0.17 0.10 0.16 0.71 0.07 0.55 0.31 0.20 0.26 0.08 0.46 0.23 0.06 0.18 0.14 0.50 K intron_retention nAcRbeta-21C chr2L + chr2L_545307_545370 chr2L_545306_545307;chr2L_545370_545371 chr2L_545131_545306;chr2L_545371_545564 2.19 0.81 1.20 1.01 0.00 0.00 3.31 0.61 1.95 8.08 2.68 1.18 2.06 0.00 1.43 3.38 0.79 2.63 2.00 1.33 1.76 16.00 4.15 2.65 0.00 0.93 3.52 8.00 11.11 7.08 0.67 2.69 4.85 0.65 1.71 2.86 3.20 2.47 2.25 5.49 4.03 0.79 1.65 5.97 4.98 2.85 2.95 2.12 0.87 3.80 2.25 0.95 2.97 1.55 2.19 2.70 0.88 1.65 K multi_cassette Pld,RI_chr2R_2138358_2141112 chr2R + chr2R_2138358_2141112 chr2R_2138358_2138634;chr2R_2139358_2139442;chr2R_2140122_2140184;chr2R_2140678_2140734;chr2R_2140861_2141112 chr2R_2138635_2139357;chr2R_2139443_2140121;chr2R_2140185_2140677;chr2R_2140735_2140860 chr2R_2138258_2138357;chr2R_2141113_2141212 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 90.91 100.00 93.33 97.14 100.00 96.43 100.00 100.00 100.00 90.91 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 92.86 96.43 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 94.12 100.00 92.31 94.44 K jcn_only_AA CG17689 chr3L + chr3L_13501646_13502149 chr3L_13501646_13501975 chr3L_13500035_13501645;chr3L_13502150_13502434 5.88 8.00 0.00 14.71 NA 0.00 4.17 6.90 7.27 5.26 NA 7.89 NA 15.00 0.00 2.94 NA NA 0.00 0.00 0.00 11.84 6.90 9.30 16.28 9.09 8.11 11.76 21.13 1.82 0.00 6.98 6.82 3.12 8.33 16.67 3.49 4.17 2.33 4.48 16.33 3.51 NA 6.25 0.00 13.64 8.11 9.00 5.88 5.88 10.00 6.67 0.00 5.00 3.85 4.44 0.00 3.90 K intron_retention sd,noncoding_23930,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15706472_15708058 chrX_15706471_15706472;chrX_15708058_15708059 chrX_15706468_15706471;chrX_15708059_15708324 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CaMKII,I_chr4_1069766_1069812,I_chr4_1071236_1071307,RI_chr4_1071236_1071315,I_chr4_1071489_1071884,RI_chr4_1071489_1071968,I_chr4_1071569_1071884,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1071236_1071968;chr4_1071236_1071884;chr4_1071236_1071813;chr4_1071236_1071319 chr4_1071236_1072054 chr4_1071136_1071235;chr4_1072055_1072059 0.00 0.00 6.25 8.11 0.00 0.00 3.03 2.94 2.50 0.00 0.00 0.00 0.00 0.00 7.69 2.50 0.00 0.00 0.00 3.70 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 6.25 0.00 3.57 0.00 0.00 12.50 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 4.00 K alternative_acceptor CG17082,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_645254_645306;chr2R_645254_645316 chr2R_645254_645312 chr2R_645185_645253;chr2R_645317_645382 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention MRP,I_chr2L_12727117_12729243,F_chr2L_12727117_12736035 chr2L + chr2L_12727117_12729930 chr2L_12727116_12727117;chr2L_12729930_12729931 chr2L_12727017_12727116;chr2L_12729931_12729979 10.64 5.41 15.56 34.21 10.42 4.88 17.05 20.65 11.38 14.29 19.35 28.95 10.91 14.63 8.33 22.00 17.50 6.67 24.14 9.68 8.70 12.50 12.90 10.00 15.15 13.04 12.33 10.64 6.06 11.36 9.26 5.00 7.89 13.70 4.65 15.38 10.64 6.00 4.71 9.80 4.76 13.98 12.12 4.94 0.00 5.71 0.00 8.33 16.88 4.00 11.11 10.81 6.45 0.00 12.86 5.00 0.00 7.14 K alternative_acceptor CG8331,I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10060189_10060261 chr2R_10060189_10060251 chr2R_10060120_10060188;chr2R_10060262_10060327 100.00 99.31 100.00 100.00 100.00 100.00 99.51 100.00 100.00 100.00 100.00 99.65 100.00 100.00 100.00 99.22 100.00 100.00 100.00 100.00 100.00 99.12 100.00 100.00 99.04 99.43 100.00 98.44 100.00 100.00 99.51 100.00 100.00 99.58 100.00 100.00 98.89 99.12 100.00 100.00 100.00 99.63 99.21 100.00 100.00 100.00 100.00 99.07 99.69 99.40 99.39 100.00 100.00 98.93 100.00 99.49 99.69 99.42 K alternative_donor Gp150,I_chr2R_18205316_18205386,I_chr2R_18213233_18213308 chr2R + chr2R_18205274_18205386;chr2R_18205316_18205386;chr2R_18205282_18205386 chr2R_18205243_18205386 chr2R_18205387_18205459;chr2R_18205216_18205242 86.54 88.67 91.00 93.54 94.44 88.78 79.14 90.08 92.58 80.65 92.40 89.04 90.53 90.10 90.60 90.77 94.43 94.14 89.80 83.95 91.19 82.61 75.12 80.95 61.16 76.45 60.42 66.67 54.43 86.76 89.29 84.44 91.41 89.12 79.31 60.00 86.61 78.89 82.69 77.05 71.43 91.40 91.60 68.92 89.74 81.08 84.21 86.46 90.67 78.95 83.33 86.67 77.94 84.00 91.09 86.54 84.81 85.54 K jcn_only_AD l(2)03709,I_chr2R_14707617_14707700,I_chr2R_14708048_14708095 chr2R + chr2R_14707007_14707125 chr2R_14707030_14707125 chr2R_14707126_14707270;chr2R_14707001_14707006 92.80 90.70 92.75 91.94 95.61 95.88 93.13 87.43 95.95 83.78 92.80 92.00 98.44 98.53 92.73 93.07 94.31 94.87 96.72 91.21 95.20 87.50 86.21 92.31 100.00 87.50 NA NA 90.24 78.12 91.43 90.67 92.31 90.06 NA NA 93.55 96.43 100.00 82.11 93.88 94.59 96.30 84.62 93.14 89.58 NA 91.46 92.96 NA 96.43 93.75 93.48 NA 91.48 NA 100.00 90.83 K cassette unk,I_chr3R_18980963_18981530 chr3R - chr3R_18980497_18981530 chr3R_18980497_18980566;chr3R_18980690_18981530 chr3R_18980567_18980689 chr3R_18979916_18980496;chr3R_18981531_18981630 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention I_chr3R_8822346_8822403,CG7518 chr3R + chr3R_8831997_8832067 chr3R_8831996_8831997;chr3R_8832067_8832068 chr3R_8831190_8831996;chr3R_8832068_8832936 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor arm,I_chrX_1790787_1794076,I_chrX_1793073_1793336,I_chrX_1793073_1793350,I_chrX_1793073_1793389,I_chrX_1793073_1793734,I_chrX_1793073_1794406,RI_chrX_1795648_1795745,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1793073_1793794;chrX_1793073_1793431 chrX_1793073_1793413 chrX_1793013_1793072;chrX_1793795_1793834 80.00 100.00 77.78 80.00 100.00 83.33 100.00 90.91 78.57 75.00 66.67 70.00 NA 71.43 77.78 91.67 100.00 80.00 75.00 80.00 100.00 54.55 63.64 55.56 80.00 60.00 80.00 85.71 100.00 80.00 60.00 100.00 71.43 73.33 83.33 NA 75.00 100.00 75.00 83.33 100.00 76.92 83.33 78.57 100.00 84.62 60.00 100.00 85.71 87.50 100.00 66.67 100.00 100.00 75.00 50.00 100.00 100.00 K intron_retention CG6361 chrX - chrX_18374518_18374574 chrX_18374517_18374518;chrX_18374574_18374575 chrX_18374123_18374517;chrX_18374575_18374761 91.67 NA NA NA NA NA NA NA 88.89 NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 91.67 90.00 N intron_retention CG1092 chr3R + chr3R_92928_93014 chr3R_92927_92928;chr3R_93014_93015 chr3R_92694_92927;chr3R_93015_94005 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Edem1,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1801468_1801527 chrX_1801467_1801468;chrX_1801527_1801528 chrX_1800339_1801467;chrX_1801528_1801679 5.10 6.90 2.99 6.74 5.08 6.94 5.26 3.49 5.19 4.65 5.36 5.22 4.00 4.08 4.40 6.15 3.64 3.80 0.00 6.90 3.03 23.08 7.14 8.86 0.00 12.73 6.49 4.65 12.90 2.82 3.49 6.25 6.82 5.08 4.84 3.17 6.25 7.46 5.10 7.34 2.38 7.14 7.27 8.57 1.79 2.86 7.69 6.14 2.86 2.78 5.17 4.44 8.89 0.00 4.26 12.50 4.88 1.64 K intron_retention I_chr2L_476332_525391,ush chr2L + chr2L_524060_525391 chr2L_524059_524060;chr2L_525391_525392 chr2L_524006_524059;chr2L_525392_525436 34.78 30.00 36.67 25.81 46.67 46.15 33.33 38.33 34.85 NA 35.29 42.22 43.33 31.25 40.00 31.48 34.38 41.94 40.00 32.35 46.67 23.53 26.67 33.33 25.00 31.25 38.46 NA 26.09 29.17 40.00 43.75 26.67 41.07 33.33 35.48 37.50 26.32 32.00 28.12 21.74 46.43 41.38 34.78 30.00 43.75 17.39 36.84 39.29 42.31 29.17 40.00 25.00 31.25 34.21 34.48 37.50 50.00 N cassette Cnx99A,I_chr3R_25142581_25142644,I_chr3R_25144335_25145173,I_chr3R_25145243_25145309,I_chr3R_25145256_25145426 chr3R - chr3R_25141892_25142441;chr3R_25142088_25142441 chr3R_25141892_25142225,chr3R_25142088_25142225;chr3R_25142352_25142441 chr3R_25142226_25142351 chr3R_25141667_25141891;chr3R_25142442_25142582 0.24 0.36 0.00 0.37 0.00 0.00 0.80 0.00 0.12 0.39 0.24 0.40 0.29 0.00 0.20 0.18 0.00 0.00 0.24 0.11 0.00 0.82 0.15 0.30 0.48 0.29 0.48 0.00 0.26 0.00 0.21 0.38 0.00 0.35 0.59 1.01 0.14 0.17 0.25 0.38 0.40 0.13 0.00 0.36 1.37 0.37 0.50 0.42 0.14 0.00 0.30 0.00 0.50 0.20 0.19 0.17 0.32 0.00 K jcn_only_AA CG6643,I_chr3R_20370792_20375406,tRNA:D:96A chr3R + chr3R_20380856_20381189 chr3R_20380856_20381180 chr3R_20380424_20380855;chr3R_20381190_20381684 98.74 98.92 99.16 98.94 99.44 99.46 98.48 98.69 97.78 98.10 98.20 98.70 100.00 98.04 99.12 99.28 98.53 98.51 98.92 98.64 98.24 98.53 99.28 99.03 98.12 97.40 98.74 97.84 98.73 99.48 98.35 99.45 99.12 99.33 98.12 99.41 96.98 97.12 98.39 97.86 99.63 99.00 96.88 99.52 97.85 99.40 98.65 98.49 99.26 98.77 99.17 99.39 98.82 99.07 97.38 99.32 98.36 99.39 K intron_retention l(2)NC136,I_chr2R_1545723_1546024 chr2R - chr2R_1548253_1548311 chr2R_1548252_1548253;chr2R_1548311_1548312 chr2R_1548106_1548252;chr2R_1548312_1548662 0.00 0.00 0.87 2.14 0.00 0.00 1.03 0.00 2.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 1.20 0.96 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.42 1.03 0.00 0.00 0.75 0.00 0.56 1.81 0.00 0.00 0.00 0.00 0.96 1.55 0.82 1.39 1.28 K alternative_acceptor Hrb27C,I_chr2L_6924401_6924743 chr2L + chr2L_6921441_6922734 chr2L_6921441_6922730 chr2L_6921423_6921440;chr2L_6922735_6922826 100.00 100.00 100.00 92.86 87.50 100.00 100.00 100.00 100.00 NA NA 89.47 100.00 100.00 88.89 93.75 88.89 NA 93.33 100.00 NA NA 90.91 100.00 NA 91.67 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA 100.00 92.86 NA NA NA NA 100.00 96.00 NA NA 100.00 NA NA 90.91 NA NA NA K intron_retention zip,I_chr2R_20878796_20879147 chr2R - chr2R_20884825_20885800 chr2R_20884824_20884825;chr2R_20885800_20885801 chr2R_20884732_20884824;chr2R_20885801_20885810 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.82 0.00 0.00 0.00 1.47 0.00 0.00 0.00 1.87 0.00 3.06 1.67 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA B52,E_chr3R_9488770_9491174 chr3R + chr3R_9491971_9492140;chr3R_9491971_9492077 chr3R_9491971_9492016 chr3R_9491806_9491970;chr3R_9492141_9492586 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 K alternative_donor mud chrX + chrX_14150134_14150517 chrX_14150332_14150517 chrX_14150518_14150790;chrX_14150034_14150133 2.00 2.56 2.56 0.00 0.00 0.00 3.70 0.00 1.72 NA 0.00 3.51 3.57 7.41 0.00 2.44 0.00 2.86 0.00 2.78 0.00 0.00 1.43 4.44 0.00 0.00 6.67 NA 4.55 4.00 0.00 0.00 0.00 5.26 0.00 3.57 2.00 0.00 3.57 0.00 2.38 0.00 0.00 2.38 0.00 1.61 4.17 2.33 3.51 2.50 2.04 6.25 3.12 2.33 0.00 2.27 0.00 0.00 K intron_retention Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_137257_137311 chr4_137256_137257;chr4_137311_137312 chr4_137167_137256;chr4_137312_137344 15.42 14.29 10.00 13.08 NA 16.67 18.49 19.17 19.38 NA 0.00 15.46 6.38 14.71 12.50 22.60 10.00 26.32 18.18 11.32 NA NA 37.93 5.13 17.39 NA 16.13 NA NA 28.57 13.64 9.09 NA 16.16 11.11 36.84 NA 33.33 0.00 12.50 31.25 17.33 22.86 23.53 17.65 17.14 4.88 0.00 17.21 18.92 13.73 14.29 0.00 10.53 15.38 14.63 8.82 16.13 K jcn_only_AD Dcp2,F_chr3L_15815909_15816023,F_chr3L_15817090_15817547 chr3L - chr3L_15817090_15819385;chr3L_15817090_15817547 chr3L_15817090_15818570 chr3L_15816990_15817089;chr3L_15819386_15819487 89.70 96.43 90.57 76.34 74.19 89.36 89.41 82.95 93.38 65.00 75.76 81.43 80.43 85.07 92.86 84.52 92.31 87.50 95.56 83.33 82.05 78.89 94.23 96.55 89.09 69.05 90.00 97.78 86.96 88.89 72.34 NA 84.91 88.61 96.15 90.67 94.87 98.67 95.95 95.24 NA 86.41 80.00 97.56 NA 100.00 97.56 84.44 90.83 96.00 95.18 98.15 NA 88.89 90.20 97.37 100.00 NA K jcn_only_AD CG42557,F_chr3R_25759624_25759720,RI_chr3R_25759681_25759960 chr3R + chr3R_25759681_25759960 chr3R_25759812_25759960 chr3R_25759961_25760060;chr3R_25759581_25759680 98.90 98.85 97.65 97.64 98.11 94.59 100.00 97.83 97.97 95.65 94.59 100.00 98.00 96.15 98.63 100.00 100.00 98.72 97.67 97.97 100.00 94.74 99.03 100.00 100.00 100.00 100.00 100.00 93.22 98.31 100.00 100.00 97.78 98.26 100.00 100.00 100.00 100.00 100.00 100.00 93.02 100.00 100.00 98.89 96.74 99.02 99.05 100.00 100.00 96.20 97.26 98.00 98.90 97.98 100.00 99.03 99.30 98.75 K alternative_donor CG14476,I_chrX_21474758_21476200,I_chrX_21475620_21475965 chrX - chrX_21475620_21476104;chrX_21475620_21476178 chrX_21475620_21476200 chrX_21475520_21475619;chrX_21476201_21476209 93.65 97.22 90.00 91.67 95.83 95.59 87.91 98.37 92.86 100.00 90.48 96.72 94.85 93.65 87.50 90.36 92.42 94.87 93.51 92.77 92.16 88.57 96.30 100.00 89.29 89.06 100.00 91.67 85.00 NA 95.52 NA NA 95.12 90.91 86.36 97.67 92.59 100.00 91.89 NA 93.33 92.00 90.91 NA 100.00 100.00 NA 93.33 97.62 90.20 97.50 95.00 100.00 96.59 100.00 96.15 100.00 K cassette CG40263,F_chr2RHet_1265687_1293040,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1265687_1324445;chr2RHet_1265687_1292103;chr2RHet_1265687_1293055 chr2RHet_1265687_1286305;chr2RHet_1286572_1324445,chr2RHet_1286572_1292103,chr2RHet_1286572_1293055 chr2RHet_1286306_1286571 chr2RHet_1265587_1265686;chr2RHet_1324446_1324530 23.07 22.92 23.40 20.00 34.38 28.57 25.00 18.25 22.12 36.36 NA 20.00 21.88 20.00 21.43 18.42 22.22 36.00 21.31 51.76 30.00 50.00 28.21 23.73 17.86 22.00 28.57 16.67 22.22 32.00 45.45 31.25 35.29 19.79 10.71 12.50 33.33 21.88 27.78 31.25 15.79 21.51 20.00 18.87 27.27 18.37 24.00 35.71 16.48 19.05 23.21 24.24 25.71 28.57 24.07 27.91 16.98 16.28 K jcn_only_AD Rpn5 chr3R + chr3R_1615416_1615491;chr3R_1615437_1615491 chr3R_1615433_1615491 chr3R_1615492_1616546;chr3R_1615400_1615415 99.42 97.73 100.00 99.46 100.00 98.85 99.31 100.00 100.00 100.00 100.00 100.00 98.70 98.90 98.20 99.31 100.00 100.00 99.06 100.00 100.00 98.99 100.00 100.00 98.67 100.00 98.89 98.59 98.36 100.00 99.08 99.16 98.98 99.36 100.00 100.00 98.84 98.08 100.00 99.35 99.22 98.27 100.00 100.00 99.15 99.42 100.00 100.00 100.00 100.00 98.95 94.44 100.00 97.83 98.29 97.87 100.00 100.00 N alternative_acceptor klar,I_chr3L_462559_472609,RI_chr3L_517594_539898 chr3L - chr3L_451328_452837 chr3L_451772_452837 chr3L_452838_453488;chr3L_451127_451327 94.48 96.20 94.29 100.00 93.94 94.42 90.96 93.53 94.78 100.00 91.88 96.09 95.63 96.02 95.82 100.00 95.00 86.07 93.41 100.00 100.00 86.16 94.60 94.62 91.40 94.48 95.41 89.95 93.28 90.00 92.08 89.61 86.43 95.10 95.24 96.03 95.04 94.97 94.47 91.94 91.25 94.75 94.41 94.27 92.53 92.97 96.01 87.16 95.35 96.21 92.93 92.44 95.48 96.77 92.03 96.13 97.84 93.30 K alternative_acceptor l(2)gd1,Gr32a chr2L + chr2L_11109508_11110158 chr2L_11109508_11110104 chr2L_11109356_11109507;chr2L_11110159_11110249 8.33 4.65 10.53 11.11 8.33 8.82 11.29 7.14 9.57 15.79 11.43 5.63 3.12 12.20 8.33 15.00 10.26 5.88 11.63 5.80 17.24 5.88 6.67 5.77 9.76 26.32 7.69 5.00 12.90 7.69 11.36 10.26 5.26 5.88 10.53 26.47 14.29 5.56 4.84 10.29 14.00 8.79 3.23 6.98 7.50 10.14 7.55 10.53 6.49 5.88 6.35 7.41 6.67 8.89 9.76 8.00 6.25 4.17 K intron_retention CdGAPr,fs(2)ltoPP43 chr2L - chr2L_19793159_19793223 chr2L_19793158_19793159;chr2L_19793223_19793224 chr2L_19792834_19793158;chr2L_19793224_19793402 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 9.52 2.04 0.00 0.00 5.56 0.00 0.00 0.00 0.00 2.70 0.00 1.82 0.00 0.00 2.38 2.13 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 2.78 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 1.72 3.28 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 K cassette CG2316,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_210055,I_chr4_209875_210628,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_213991,RI_chr4_210688_214450 chr4 - chr4_209150_210623;chr4_209150_214298 chr4_209150_209203;chr4_209875_210623,chr4_209875_214298 chr4_209204_209874 chr4_209051_209149;chr4_214299_214311 97.53 98.18 97.06 92.98 100.00 98.33 96.48 96.05 99.45 100.00 100.00 97.73 100.00 97.53 100.00 96.95 100.00 96.36 100.00 99.12 97.96 95.83 94.34 97.78 96.77 95.35 98.25 95.00 92.86 96.67 98.89 94.44 94.74 99.36 97.92 89.29 100.00 97.06 96.43 98.08 94.74 98.46 100.00 90.91 91.67 92.31 96.67 97.44 98.05 100.00 98.48 100.00 100.00 94.44 98.73 91.67 94.12 97.14 K intron_retention CG9705,I_chr3L_16774043_16774562 chr3L + chr3L_16774686_16774763 chr3L_16774685_16774686;chr3L_16774763_16774764 chr3L_16774563_16774685;chr3L_16774764_16775646 2.16 2.38 2.44 9.40 0.68 2.04 3.36 3.03 1.33 0.00 1.11 5.08 3.06 2.88 1.64 1.40 2.22 0.78 1.80 2.68 0.98 4.00 0.00 1.30 0.00 1.92 3.12 7.14 3.60 3.23 2.34 1.94 2.90 1.73 3.97 3.45 0.83 2.58 1.52 0.32 5.00 1.29 1.28 2.24 3.03 2.69 3.05 2.72 1.75 1.81 1.70 0.91 1.32 1.26 3.76 2.16 0.00 2.72 K alternative_donor robo chr2R - chr2R_18587540_18587701 chr2R_18587540_18587595 chr2R_18587307_18587539;chr2R_18587702_18587874 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG34123,I_chr2R_11159045_11159622,RI_chr2R_11160894_11162043,I_chr2R_11167854_11168411 chr2R - chr2R_11154968_11155346 chr2R_11154968_11155310 chr2R_11154735_11154967;chr2R_11155347_11155470 10.71 13.79 4.35 9.09 11.76 4.17 17.50 7.50 10.53 16.67 5.56 20.59 17.65 12.00 10.00 9.09 0.00 11.76 16.67 15.38 14.29 50.00 7.32 10.00 15.79 10.71 9.52 20.00 12.00 4.17 8.57 7.69 12.00 10.00 8.70 41.67 4.88 17.14 9.09 14.29 17.65 7.69 14.29 10.00 33.33 6.90 4.17 16.67 11.67 17.65 9.52 12.50 14.81 18.75 6.52 10.53 7.14 6.90 K intron_retention Nnf1b,I_chr2L_810759_810816,KH1 chr2L + chr2L_810759_810808 chr2L_810758_810759;chr2L_810808_810809 chr2L_810691_810758;chr2L_810809_810876 0.00 0.00 0.00 6.49 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 NA 0.00 0.00 0.00 0.00 3.12 11.11 0.00 NA 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_17011307_17028173 chr3R_17011307_17026481 chr3R_17011270_17011306 9.43 10.81 8.00 12.50 17.86 6.25 6.67 10.42 10.71 9.52 7.69 8.62 10.00 16.00 4.55 4.35 NA 7.69 14.29 7.69 2.70 NA 12.12 18.18 14.29 19.35 9.68 20.00 NA 26.09 10.64 NA NA 8.11 4.55 14.29 15.38 9.43 2.60 12.50 NA 7.84 4.00 16.13 NA 3.45 10.81 NA 9.23 5.88 5.71 8.70 6.67 6.67 4.35 3.45 15.38 13.04 K intron_retention didum,I_chr2R_3393005_3393348 chr2R + chr2R_3395166_3395219 chr2R_3395165_3395166;chr2R_3395219_3395220 chr2R_3394941_3395165;chr2R_3395220_3395857 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.67 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 K intron_retention RhoBTB,RI_chr3L_20370940_20371530,I_chr3L_20374844_20374891 chr3L + chr3L_20373270_20373334 chr3L_20373269_20373270;chr3L_20373334_20373335 chr3L_20373011_20373269;chr3L_20373335_20373448 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 8.33 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 NA 0.00 4.35 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K alternative_acceptor phtf,I_chr2R_2629598_2630209 chr2R + chr2R_2632045_2632107 chr2R_2632045_2632103 chr2R_2631158_2632044;chr2R_2632108_2632282 94.74 100.00 92.86 85.00 87.50 100.00 72.73 91.67 95.24 NA 88.89 94.44 NA 88.89 100.00 92.31 NA 100.00 93.33 95.00 87.50 100.00 94.74 100.00 NA 100.00 100.00 NA NA NA 91.67 NA 91.67 90.00 100.00 91.67 100.00 100.00 100.00 100.00 NA 100.00 88.89 92.86 90.91 91.67 100.00 100.00 94.12 66.67 100.00 NA 100.00 91.67 100.00 92.31 100.00 100.00 K intron_retention Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11835112_11836312 chr2R_11835111_11835112;chr2R_11836312_11836313 chr2R_11834432_11835111;chr2R_11836313_11836490 20.00 NA NA 19.05 NA NA NA 20.00 29.41 NA NA 25.00 NA NA NA NA NA NA NA 9.09 NA NA 12.50 14.29 NA NA 38.46 NA NA NA 7.69 NA NA NA NA NA 30.77 25.00 20.00 NA NA 17.65 NA NA NA NA NA NA NA NA 28.57 NA NA NA NA 13.33 NA NA K intron_retention CG1753,noncoding_25029 chrX + chrX_20919626_20919691 chrX_20919625_20919626;chrX_20919691_20919692 chrX_20918584_20919625;chrX_20919692_20920127 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.43 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.38 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.71 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.38 0.44 0.00 0.00 1.38 0.44 0.00 0.00 0.62 0.00 0.00 0.28 0.38 0.56 K multi_cassette msn,I_chr3L_2558033_2560115,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2558036_2563817 chr3L_2558036_2560115;chr3L_2560296_2561931;chr3L_2562844_2563817 chr3L_2560116_2560295;chr3L_2561932_2562843 chr3L_2557936_2558035;chr3L_2563818_2563917 91.11 92.31 83.33 94.44 100.00 92.31 85.19 80.95 81.40 93.33 91.67 91.67 100.00 90.91 94.44 90.91 90.00 87.50 81.82 94.44 75.00 70.83 89.23 91.23 91.11 66.67 77.78 86.67 100.00 88.24 81.25 93.75 97.87 95.83 89.19 90.24 91.53 89.80 92.16 93.33 89.66 88.14 90.91 95.45 88.24 88.89 100.00 92.11 95.24 86.96 88.00 95.65 100.00 95.00 71.43 92.00 100.00 96.00 N alternative_donor CG31156,F_chr3R_18435204_18436237,EFI_chr3R_18436373_18436443 chr3R - chr3R_18435204_18436443 chr3R_18435204_18435694 chr3R_18435104_18435203;chr3R_18436444_18436543 12.50 6.67 6.67 0.00 8.33 NA 25.00 14.29 6.90 NA 28.57 18.75 NA 18.18 9.09 5.88 NA NA 16.67 29.41 28.57 28.57 10.53 11.76 NA 6.67 6.67 12.50 NA NA 28.57 NA NA 20.00 NA NA 14.29 12.50 10.53 17.65 NA 9.52 10.00 22.22 NA 16.67 4.76 NA 14.29 13.33 11.76 NA NA 25.00 12.50 5.88 10.53 7.14 K jcn_only_AD CG1657 chrX + chrX_11219544_11222056;chrX_11219604_11222056 chrX_11219635_11222056 chrX_11222057_11222225;chrX_11219475_11219543 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 7.41 0.00 NA 0.00 3.57 0.00 0.00 0.00 0.00 2.56 0.00 0.00 2.27 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.93 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.69 0.00 NA NA 0.00 NA NA 0.00 K alternative_last_exon gpp,I_chr3R_2271795_2272181 chr3R + chr3R_2270033_2272181 chr3R_2270033_2271256 chr3R_2272182_2273729 chr3R_2271257_2271735 chr3R_2269544_2270032 33.63 37.88 34.48 42.86 32.08 35.85 40.23 50.00 41.61 23.81 43.48 46.73 65.31 45.61 32.26 49.02 45.83 32.08 48.33 39.04 44.44 15.52 35.22 33.63 26.14 32.50 33.93 26.19 19.32 31.65 40.74 31.67 33.82 43.30 33.33 30.77 23.46 29.17 24.11 28.47 31.37 33.59 46.00 30.19 18.95 33.68 27.27 32.18 39.47 30.66 30.77 35.38 34.78 28.17 39.71 28.40 32.10 35.16 K intron_retention Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4842463_4843022 chrX_4842462_4842463;chrX_4843022_4843023 chrX_4842430_4842462;chrX_4843023_4843701 88.89 NA NA 90.91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Edem1,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1798315_1798577 chrX_1798314_1798315;chrX_1798577_1798578 chrX_1798215_1798314;chrX_1798578_1798625 95.00 85.00 100.00 100.00 93.75 94.12 97.06 97.30 92.16 94.12 100.00 97.37 95.45 94.44 96.00 96.15 95.00 94.74 96.00 94.87 93.75 92.86 87.88 93.55 86.67 100.00 86.36 95.00 89.29 95.00 96.67 84.00 90.24 97.22 93.33 95.24 96.67 100.00 96.00 97.56 96.15 97.87 90.48 96.15 93.75 97.67 96.55 98.04 100.00 85.71 91.30 94.44 90.91 95.24 96.88 84.00 88.46 92.11 K jcn_only_AD CG11652,I_chr3L_11688679_11688728 chr3L - chr3L_11688679_11689514 chr3L_11688679_11689450 chr3L_11688579_11688678;chr3L_11689515_11689841 52.38 52.17 52.78 73.91 38.46 NA 61.02 68.00 58.33 NA NA 50.88 NA NA 52.38 57.38 42.86 53.57 38.71 53.06 NA 52.38 NA 63.64 NA 41.67 50.00 NA NA NA 50.98 NA NA 53.19 NA NA 60.00 NA 45.45 39.13 NA 47.17 55.88 48.28 NA NA NA NA 56.52 NA 57.69 50.00 NA NA 44.83 NA NA NA K cassette CG3114,RI_chrX_168562_168685 chrX - chrX_165647_167215;chrX_165647_166454 chrX_165647_165834;chrX_165909_167215,chrX_165909_166454 chrX_165835_165908 chrX_165521_165646;chrX_167216_167420 13.34 6.67 14.29 25.00 NA NA 7.69 7.14 22.73 NA NA 5.56 NA NA 6.25 21.43 8.33 NA NA 13.04 NA 23.53 26.32 18.18 NA NA 27.27 NA 15.38 NA 27.27 NA 16.67 5.26 NA 33.33 10.53 NA 10.53 11.11 NA 13.04 NA NA NA NA NA NA 13.64 NA 26.67 NA 7.69 NA NA NA NA 11.11 N jcn_only_AD prominin-like,I_chr3L_3121200_3123087 chr3L - chr3L_3117406_3117833 chr3L_3117406_3117486 chr3L_3117346_3117405;chr3L_3117834_3117973 4.10 0.00 4.51 5.36 4.81 4.55 0.00 4.26 4.24 0.00 0.00 4.20 4.65 5.92 4.11 22.91 4.85 4.94 4.44 1.79 0.00 4.46 0.00 0.00 0.00 0.00 6.61 0.00 0.00 0.00 8.11 8.03 9.94 5.12 5.42 0.00 0.00 0.00 0.00 7.35 0.00 4.83 0.00 2.88 0.00 5.81 0.00 11.25 5.87 0.00 2.53 0.00 0.00 0.00 7.30 0.00 4.10 9.52 N alternative_donor CG11151 chrX + chrX_13634528_13634710;chrX_13634652_13634710 chrX_13634146_13634710 chrX_13634711_13635156;chrX_13633982_13634145 99.53 99.76 99.57 99.66 99.18 99.74 99.44 99.36 98.61 99.63 100.00 99.18 99.10 98.99 99.57 99.21 99.24 99.30 99.49 99.39 99.67 98.85 99.53 99.56 98.87 100.00 99.30 99.02 100.00 99.81 98.78 99.44 99.78 99.30 99.49 100.00 99.59 99.53 99.23 99.55 99.79 99.35 99.10 100.00 99.78 99.88 99.61 100.00 99.12 99.07 98.93 99.05 99.55 99.46 99.56 99.54 99.73 99.85 K intron_retention Thiolase chr2R - chr2R_19755736_19755984 chr2R_19755735_19755736;chr2R_19755984_19755985 chr2R_19755576_19755735;chr2R_19755985_19756140 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 1.32 0.00 2.99 1.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10082,E_chr2R_17533874_17544072,RI_chr2R_17537544_17537615,I_chr2R_17541516_17542279,I_chr2R_17541573_17542279,I_chr2R_17543813_17543881 chr2R + chr2R_17540069_17540723 chr2R_17540068_17540069;chr2R_17540723_17540724 chr2R_17539942_17540068;chr2R_17540724_17540854 93.09 100.00 92.31 100.00 NA 90.00 100.00 88.89 88.46 NA NA 85.71 NA 90.91 90.91 94.44 NA 100.00 93.33 96.00 83.33 NA NA NA NA 100.00 NA NA NA NA 72.73 NA NA 100.00 NA NA NA NA 87.50 88.89 NA 95.65 100.00 81.82 NA 92.86 NA NA 94.12 NA NA NA NA NA 100.00 NA NA NA K intron_retention CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21263180_21263647 chr2L_21263179_21263180;chr2L_21263647_21263648 chr2L_21263174_21263179;chr2L_21263648_21263786 37.65 NA 46.15 36.84 NA NA 47.83 52.94 30.00 NA NA 27.27 NA NA 38.46 39.13 NA NA 41.67 31.58 NA NA NA NA NA 36.84 NA NA 33.33 NA 50.00 NA 69.23 18.75 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA 29.17 NA NA NA NA NA 27.27 NA NA NA K intron_retention CG32103,I_chr3L_12398261_12403200 chr3L - chr3L_12398261_12405110 chr3L_12398260_12398261;chr3L_12405110_12405111 chr3L_12398161_12398260;chr3L_12405111_12405222 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 1.37 0.00 0.00 5.77 4.17 3.85 0.00 6.90 4.00 0.00 0.00 0.00 0.00 4.08 2.00 0.00 0.00 0.00 2.63 3.45 5.88 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 1.82 3.85 0.00 0.00 0.00 0.00 5.26 0.00 K jcn_only_AA Pms2,I_chr2R_11257708_11257764 chr2R - chr2R_11257708_11257764 chr2R_11257712_11257764 chr2R_11257765_11257864;chr2R_11257608_11257707 98.06 100.00 NA 96.00 NA NA 97.22 100.00 98.21 NA 100.00 100.00 NA 100.00 100.00 91.67 NA NA 95.45 97.92 NA 100.00 100.00 96.77 90.00 NA 96.15 100.00 NA NA NA NA 100.00 97.50 100.00 NA 100.00 90.91 96.15 100.00 100.00 97.14 NA 96.55 NA NA NA 100.00 97.37 95.83 95.35 100.00 NA NA 95.24 NA 90.00 100.00 K intron_retention CG6178 chr3R + chr3R_19978326_19978811 chr3R_19978325_19978326;chr3R_19978811_19978812 chr3R_19978101_19978325;chr3R_19978812_19979489 0.00 0.00 0.00 2.78 0.00 0.00 4.65 0.00 3.45 0.00 0.00 0.00 0.00 0.00 2.70 5.71 0.00 8.00 0.00 1.54 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 5.00 NA 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 5.56 0.00 1.89 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 K alternative_donor RpL15 chr3LHet + chr3LHet_2398018_2398127;chr3LHet_2397859_2398127;chr3LHet_2397925_2398127;chr3LHet_2398060_2398127;chr3LHet_2397841_2398127;chr3LHet_2398002_2398127;chr3LHet_2397820_2398127;chr3LHet_2398053_2398127 chr3LHet_2397992_2398127 chr3LHet_2398128_2398454;chr3LHet_2397802_2397819 4.30 9.52 6.52 2.42 6.67 10.00 22.22 2.18 17.19 8.33 0.00 17.86 18.52 11.11 1.56 24.14 3.70 3.33 2.08 11.29 11.11 2.17 3.70 17.39 5.56 1.56 3.57 1.07 5.04 3.75 4.72 1.31 0.92 2.36 2.38 4.29 16.67 7.69 16.67 0.86 2.21 2.65 4.69 1.11 0.98 4.29 16.67 1.28 4.30 13.04 17.39 5.88 0.16 10.53 1.20 11.54 10.00 0.17 K intron_retention scny,I_chr3L_5763034_5768288 chr3L + chr3L_5767177_5768288 chr3L_5767176_5767177;chr3L_5768288_5768289 chr3L_5767039_5767176;chr3L_5768289_5768388 1.56 0.98 1.18 5.48 0.00 0.00 0.00 0.00 2.29 1.15 0.00 4.17 1.85 0.00 2.41 1.72 0.00 0.00 4.76 1.25 3.08 5.10 1.65 3.33 0.87 0.00 0.00 3.41 5.88 0.00 4.48 1.56 3.12 1.89 3.85 3.49 2.09 1.65 1.78 2.70 1.72 2.53 3.17 0.00 1.85 3.57 1.38 0.00 1.32 0.00 1.52 1.30 0.00 0.00 0.00 1.79 0.00 0.00 K intron_retention CrebB-17A,I_chrX_18261213_18269281,I_chrX_18265640_18266060,I_chrX_18265982_18266063 chrX + chrX_18267489_18269875 chrX_18267488_18267489;chrX_18269875_18269876 chrX_18267320_18267488;chrX_18269876_18270084 16.13 3.23 15.00 22.22 17.39 11.54 12.12 20.69 10.64 21.43 13.16 36.36 26.67 NA 16.13 21.74 10.71 16.00 14.29 7.81 23.33 19.61 13.33 6.25 12.50 16.13 15.91 23.33 23.26 6.52 19.35 19.23 19.35 17.14 16.67 9.52 10.42 17.65 13.46 8.77 26.09 8.47 20.00 19.35 17.31 21.05 14.29 16.67 16.67 11.76 20.00 17.65 13.04 11.90 18.92 9.09 2.94 12.00 K intron_retention CG7054 chr3R + chr3R_18290726_18290781 chr3R_18290725_18290726;chr3R_18290781_18290782 chr3R_18290652_18290725;chr3R_18290782_18291397 92.86 100.00 92.86 100.00 NA 100.00 69.57 100.00 95.00 NA 100.00 95.65 91.67 100.00 100.00 100.00 90.00 NA 95.45 95.45 NA 91.67 90.91 94.74 100.00 87.50 92.31 100.00 90.91 88.89 100.00 NA NA 96.00 93.75 100.00 81.82 NA NA 91.30 88.89 95.45 100.00 90.91 88.89 100.00 93.33 88.89 90.48 84.62 92.86 87.50 80.00 90.00 90.91 92.86 87.50 92.86 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2814327_2817753 chr2R_2814327_2816013;chr2R_2816342_2816577;chr2R_2816779_2817354;chr2R_2817604_2817753 chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817355_2817603 chr2R_2814227_2814326;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 98.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 K alternative_acceptor CG8372,RI_chr2L_8212717_8212766,RI_chr2L_8212802_8212867 chr2L - chr2L_8212693_8212766 chr2L_8212717_8212766 chr2L_8212767_8212801;chr2L_8212617_8212692 34.29 36.36 32.35 48.65 33.33 34.29 28.12 37.50 35.85 14.29 37.50 42.11 44.83 39.13 43.90 39.47 36.36 34.62 48.00 36.76 45.45 20.37 28.57 28.21 52.17 57.14 35.90 48.15 59.46 36.84 27.50 21.05 50.00 31.25 21.21 27.27 27.27 26.67 27.03 29.63 30.43 38.00 34.78 30.30 39.47 23.08 21.15 28.57 40.98 37.93 31.43 14.29 29.17 27.78 41.67 30.56 29.17 25.93 K alternative_acceptor CG9339,I_chr2L_20877473_20877552,I_chr2L_20877678_20903015,I_chr2L_20882465_20889794,RE_chr2L_20903555_20916904,I_chr2L_20903560_20918638,I_chr2L_20922613_20922685 chr2L - chr2L_20877473_20877552 chr2L_20877478_20877552 chr2L_20877553_20877652;chr2L_20877411_20877472 97.83 100.00 97.44 96.88 96.00 96.97 100.00 98.57 95.96 100.00 100.00 98.31 92.86 97.50 97.87 100.00 97.56 97.14 100.00 100.00 95.65 100.00 97.22 100.00 95.65 97.37 97.83 95.00 98.21 97.62 98.00 100.00 97.62 98.55 96.43 97.14 97.67 95.83 98.00 96.55 94.29 98.67 97.06 97.78 100.00 100.00 100.00 99.05 100.00 100.00 97.22 96.67 94.74 100.00 98.25 95.45 100.00 97.87 K intron_retention Pabp2,I_chr2R_4020297_4020426 chr2R + chr2R_4020714_4021119 chr2R_4020713_4020714;chr2R_4021119_4021120 chr2R_4020646_4020713;chr2R_4021120_4021129 0.00 0.00 NA 3.23 NA NA 7.32 0.00 3.61 NA 0.00 0.00 6.25 0.00 4.55 7.55 0.00 6.67 8.70 0.00 NA 0.00 3.92 0.00 NA NA 0.00 NA NA 0.00 NA NA 0.00 5.77 7.41 0.00 0.00 6.25 11.11 0.00 5.56 0.00 0.00 2.94 NA 0.00 0.00 NA 3.39 0.00 0.00 0.00 0.00 0.00 0.00 4.55 4.17 0.00 K jcn_only_AA mip120,I_chr2R_9394299_9394351,RI_chr2R_9394299_9395019 chr2R + chr2R_9394299_9397293;chr2R_9394299_9394351 chr2R_9394299_9395019 chr2R_9394199_9394298 26.47 34.38 16.67 0.00 NA 18.18 NA 0.00 14.63 NA NA 7.50 NA 22.73 29.17 27.78 NA 33.33 22.73 13.85 28.00 NA 16.67 24.32 47.83 NA NA NA NA NA 60.00 NA 50.00 24.24 NA 60.87 60.42 20.00 33.33 40.82 NA 11.43 NA 18.18 66.67 45.45 NA 53.33 26.47 50.00 15.79 NA NA NA 16.67 35.00 NA NA K intron_retention Adk2 chr2R + chr2R_19912660_19912722 chr2R_19912659_19912660;chr2R_19912722_19912723 chr2R_19912423_19912659;chr2R_19912723_19912890 4.24 4.24 2.90 5.65 2.16 3.77 12.39 2.13 3.27 6.62 5.62 2.75 5.65 3.60 2.43 3.61 2.88 2.37 2.65 2.62 5.19 11.41 6.90 4.94 16.98 11.33 9.61 4.39 16.81 3.76 19.01 5.41 2.58 3.80 6.15 10.00 3.53 4.87 4.71 5.52 9.05 3.12 3.27 3.74 3.26 5.29 5.67 5.78 3.79 4.33 5.82 1.73 2.50 4.00 3.44 4.72 2.22 1.86 K jcn_only_AD cryptocephal,I_chr2L_21311307_21311752,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21311033_21311752;chr2L_21311307_21311752;chr2L_21311215_21311752 chr2L_21311532_21311752 chr2L_21311753_21311852;chr2L_21310948_21311032 12.77 11.30 9.33 5.51 10.58 9.47 9.46 6.01 13.25 26.29 9.05 8.15 9.85 11.11 9.57 19.17 12.77 25.29 8.90 8.26 10.24 21.25 7.70 17.03 12.32 5.64 17.14 12.04 23.40 13.18 13.23 21.32 11.16 8.27 14.39 16.72 19.34 17.35 17.33 26.84 17.48 10.11 10.23 15.61 17.63 15.15 13.06 16.90 8.80 16.18 12.35 19.41 12.68 15.81 9.22 16.80 9.76 14.31 K jcn_only_AD CG18815 chr3L + chr3L_11621227_11621442 chr3L_11621237_11621442 chr3L_11621443_11621601;chr3L_11621168_11621226 98.97 98.97 98.74 98.60 99.24 99.08 98.62 99.20 98.89 98.99 98.94 99.75 98.33 98.59 96.74 99.15 98.22 99.45 100.00 99.12 99.47 96.71 98.19 99.13 99.32 98.20 98.92 100.00 98.56 99.28 97.63 100.00 99.17 98.08 98.13 98.57 99.64 99.45 99.58 99.57 98.92 98.85 99.29 100.00 97.69 98.64 98.21 99.03 98.21 99.38 99.58 98.88 98.03 98.65 100.00 98.96 99.18 99.17 K alternative_donor RpL28,RI_chr3L_3221710_3221877,snoRNA:Me28S-C3351 chr3L - chr3L_3221710_3221881 chr3L_3221710_3221877 chr3L_3221610_3221709;chr3L_3221882_3221977 0.03 0.01 0.00 0.03 0.03 0.02 0.02 0.01 0.00 0.00 0.00 0.03 0.05 0.00 0.00 0.02 0.03 0.00 0.02 0.01 0.02 0.05 0.02 0.01 0.05 0.00 0.11 0.05 0.06 0.04 0.24 0.06 0.03 0.04 0.02 0.05 0.01 0.03 0.04 0.03 0.02 0.03 0.03 0.05 0.01 0.03 0.01 0.02 0.07 0.03 0.02 0.05 0.01 0.03 0.02 0.03 0.05 0.05 K intron_retention Nedd4,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17533939_17534001 chr3L_17533938_17533939;chr3L_17534001_17534002 chr3L_17533791_17533938;chr3L_17534002_17534126 0.00 0.00 0.00 1.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor dmondo,I_chr2L_21289375_21289461,I_chr2L_21301528_21308287,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579 chr2L - chr2L_21289375_21289461 chr2L_21289405_21289461 chr2L_21289462_21289548;chr2L_21289275_21289374 100.00 100.00 100.00 98.65 100.00 97.96 98.78 100.00 100.00 100.00 100.00 100.00 98.08 97.96 100.00 98.75 100.00 98.04 100.00 100.00 100.00 98.78 99.02 100.00 100.00 100.00 100.00 100.00 96.43 98.00 98.18 100.00 100.00 100.00 98.18 100.00 98.86 98.15 98.81 100.00 100.00 99.12 100.00 100.00 100.00 100.00 98.36 100.00 100.00 98.39 100.00 100.00 100.00 97.78 98.28 100.00 98.53 98.18 K intron_retention CG4729 chr3L - chr3L_16377214_16378919 chr3L_16377213_16377214;chr3L_16378919_16378920 chr3L_16377027_16377213;chr3L_16378920_16378988 0.00 0.00 0.00 0.39 0.00 0.00 0.73 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 1.54 NA 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG7375 chr3L - chr3L_8190803_8190878 chr3L_8190806_8190878 chr3L_8190879_8190964;chr3L_8190622_8190802 9.86 12.05 14.29 12.95 9.68 12.00 8.55 10.40 4.93 5.56 7.46 11.32 9.86 6.58 7.78 8.70 9.23 11.67 12.68 8.33 10.00 3.19 11.72 5.06 12.50 15.48 19.35 7.02 9.09 5.77 12.22 11.84 10.96 10.38 16.33 8.33 12.79 8.62 13.89 6.82 6.67 17.39 5.80 10.00 15.00 17.92 6.98 8.16 9.86 9.84 11.24 9.43 6.67 9.09 7.50 4.65 10.42 15.45 K jcn_only_AD Mtch,RI_chr3L_184729_185366,I_chr3L_185367_185925 chr3L + chr3L_184682_184777;chr3L_184670_184777 chr3L_184663_184777 chr3L_184778_184854;chr3L_184654_184662 4.35 NA NA NA NA 14.29 NA NA 10.00 NA NA NA NA NA NA NA NA NA NA 4.00 NA NA NA NA NA NA NA NA NA NA 5.00 NA NA 12.50 NA NA NA NA NA 3.33 NA 0.00 NA NA NA NA NA 4.55 4.35 NA NA NA NA NA 4.00 NA NA 0.00 K alternative_acceptor CG31715,I_chr2L_10341933_10342151,I_chr2L_10341933_10342155 chr2L + chr2L_10341933_10342149;chr2L_10341933_10342151 chr2L_10341933_10342155 chr2L_10341833_10341932;chr2L_10342156_10342233 2.70 0.00 0.00 3.64 0.00 4.76 3.57 3.39 1.54 0.00 4.76 2.08 3.57 3.03 2.70 2.13 5.56 4.76 2.70 2.13 5.00 0.00 0.00 0.00 0.00 6.06 0.00 0.00 9.09 0.00 3.03 4.17 5.56 5.17 0.00 6.25 0.00 0.00 0.00 3.57 6.67 1.79 0.00 0.00 0.00 3.12 4.35 7.14 5.17 0.00 0.00 6.25 0.00 4.55 2.94 0.00 2.33 2.70 K jcn_only_AA Pect,I_chr2L_13207997_13208109,E_chr2L_13208285_13210076 chr2L + chr2L_13208778_13209435;chr2L_13208778_13209492;chr2L_13208778_13209471 chr2L_13208778_13209501 chr2L_13208665_13208777;chr2L_13209502_13209599 0.16 0.32 0.00 0.20 0.00 0.00 0.00 0.17 0.00 1.23 0.00 0.16 1.59 0.00 0.00 0.18 0.00 0.00 0.29 0.28 0.00 0.42 0.21 0.61 0.49 0.00 0.24 0.00 0.60 0.00 0.91 0.57 1.30 0.00 0.70 0.00 0.00 0.82 0.00 0.00 0.00 0.17 0.00 0.34 0.50 0.32 0.00 0.00 0.16 0.90 0.66 0.32 0.00 0.00 0.50 0.00 0.34 0.00 N alternative_last_exon bs chr2R + chr2R_20232198_20262937 chr2R_20232198_20235734 chr2R_20262938_20263289 chr2R_20235735_20237712 chr2R_20231248_20232197 88.89 88.89 87.50 60.00 85.71 85.71 85.71 87.50 93.75 83.33 87.50 93.33 80.00 83.33 90.00 88.89 85.71 83.33 85.71 93.75 85.71 90.00 93.75 92.31 90.00 85.71 88.89 90.00 88.89 85.71 83.33 83.33 90.00 90.91 80.00 87.50 93.75 91.67 94.12 90.91 80.00 93.33 85.71 87.50 91.67 90.00 90.91 71.43 92.86 91.67 90.91 85.71 90.91 88.89 88.89 90.00 90.91 90.91 K intron_retention mars,I_chr2R_9392048_9392110 chr2R + chr2R_9390254_9390310 chr2R_9390253_9390254;chr2R_9390310_9390311 chr2R_9390196_9390253;chr2R_9390311_9390371 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA NA 100.00 NA NA NA NA 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 N alternative_acceptor CG18228 chr3R - chr3R_4087273_4087522;chr3R_4087322_4087522 chr3R_4087428_4087522 chr3R_4087523_4087669;chr3R_4087045_4087272 13.04 17.86 6.98 12.00 14.29 6.45 29.23 16.67 18.75 14.29 15.00 21.15 9.43 6.52 12.90 15.52 17.24 9.09 10.00 14.29 10.00 12.50 14.29 11.54 15.38 12.50 13.04 4.76 33.33 7.14 5.66 15.79 20.00 10.00 20.00 25.00 7.69 11.11 15.38 34.48 22.22 10.45 10.00 15.79 16.67 12.20 5.00 14.29 8.79 10.81 15.79 25.93 14.29 13.64 7.89 13.04 8.11 12.50 K jcn_only_AA CG6656,RI_chr3R_17701533_17702073,CG33092 chr3R + chr3R_17701353_17702296 chr3R_17701353_17701436 chr3R_17701088_17701352 99.44 99.14 99.15 94.34 100.00 100.00 100.00 100.00 99.60 97.14 100.00 99.47 100.00 99.01 99.28 99.20 100.00 100.00 100.00 99.01 100.00 98.35 99.24 99.20 95.74 94.44 100.00 98.61 100.00 96.52 100.00 100.00 100.00 99.44 98.67 100.00 99.15 98.80 100.00 98.77 100.00 100.00 98.08 100.00 97.94 99.15 99.07 100.00 100.00 99.01 99.41 100.00 100.00 99.07 100.00 100.00 98.81 99.23 K intron_retention S6k,I_chr3L_5800361_5803389,RI_chr3L_5801924_5803389 chr3L - chr3L_5800361_5801047 chr3L_5800360_5800361;chr3L_5801047_5801048 chr3L_5800311_5800360;chr3L_5801048_5801088 7.59 4.17 7.62 7.84 4.69 3.70 10.43 5.70 7.35 3.08 7.84 10.90 5.41 7.34 9.57 7.59 5.08 9.52 6.25 8.99 2.97 15.96 8.26 5.41 10.17 4.10 13.08 16.39 9.09 13.04 15.61 8.47 12.38 5.80 9.59 9.89 6.13 1.25 8.87 5.14 9.23 6.25 8.25 8.41 6.52 4.31 9.18 8.28 6.75 8.47 7.41 8.05 1.92 2.60 5.52 3.85 4.82 5.74 K alternative_acceptor Amun,I_chrX_11607839_11608272,I_chrX_11607842_11608105,I_chrX_11607842_11608125,RI_chrX_11607842_11608272 chrX - chrX_11607722_11607787;chrX_11607631_11607787 chrX_11607718_11607787 chrX_11607788_11607838;chrX_11606802_11607630 0.00 2.70 2.56 2.00 0.00 0.00 0.00 0.00 2.41 4.17 0.00 0.00 3.57 3.12 0.00 2.22 0.00 0.00 2.94 2.38 0.00 0.00 1.92 2.27 2.86 3.23 2.22 0.00 2.50 0.00 0.00 0.00 0.00 0.00 3.23 2.33 2.13 0.00 0.00 2.50 3.23 1.47 0.00 2.33 0.00 0.00 0.00 2.44 0.00 3.12 0.00 3.57 0.00 2.86 0.00 0.00 0.00 0.00 K intron_retention babo chr2R + chr2R_4844662_4846611 chr2R_4844661_4844662;chr2R_4846611_4846612 chr2R_4844594_4844661;chr2R_4846612_4846839 47.06 60.00 47.06 63.64 NA 60.00 43.59 31.58 48.48 NA NA 20.51 88.89 NA 69.23 52.94 40.00 NA 46.67 40.48 50.00 60.00 41.67 40.91 33.33 NA 30.00 NA NA 54.55 53.33 NA NA 56.00 NA NA 42.11 38.46 33.33 40.00 NA 62.50 NA 50.00 NA NA NA 45.45 51.72 NA 40.00 58.33 NA NA 69.23 NA 25.00 NA K intron_retention lolal,I_chr2R_14043671_14043736,I_chr2R_14043671_14043740,I_chr2R_14043671_14043901,RI_chr2R_14043671_14044082,I_chr2R_14043671_14044191,I_chr2R_14043671_14044461,I_chr2R_14043671_14045289,I_chr2R_14043671_14045344 chr2R - chr2R_14043671_14045446 chr2R_14043670_14043671;chr2R_14045446_14045447 chr2R_14043571_14043670;chr2R_14045447_14045465 28.57 NA 14.29 41.18 NA NA NA 26.09 36.84 NA NA 29.41 21.43 NA NA 26.32 NA 38.46 NA 28.57 NA 58.33 NA NA NA NA NA NA 15.38 50.00 25.00 NA 26.32 41.67 NA 60.00 NA NA NA 45.83 25.00 42.86 NA NA 14.29 NA NA 13.04 33.33 NA NA NA NA NA NA NA NA 2.70 K intron_retention noncoding_5243,I_chr2R_4553376_4563976,l(2)44DEa,I_chr2R_4553577_4562151,I_chr2R_4553817_4565934,I_chr2R_4554300_4563976,I_chr2R_4559579_4559675,I_chr2R_4565692_4565934 chr2R + chr2R_4554300_4562151 chr2R_4554299_4554300;chr2R_4562151_4562152 chr2R_4554273_4554299;chr2R_4562152_4562251 12.70 NA NA 12.50 NA NA 12.90 12.50 0.00 NA NA 12.50 NA NA NA 5.56 14.29 NA 21.43 8.33 NA NA 14.29 NA NA NA 17.65 NA NA NA 13.33 NA NA 13.79 NA 14.29 NA NA NA NA NA 8.70 NA NA NA NA NA NA 12.90 NA 11.11 NA NA NA 0.00 NA NA NA K intron_retention F_chr3L_6602496_6609177,CG8398 chr3L + chr3L_6606922_6608997 chr3L_6606921_6606922;chr3L_6608997_6608998 chr3L_6606636_6606921;chr3L_6608998_6609696 0.00 0.00 0.00 4.92 0.00 0.00 3.39 7.84 6.10 NA 0.00 5.41 0.00 0.00 0.00 0.00 5.71 0.00 2.17 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 NA 4.08 4.76 NA 0.00 NA NA 0.00 0.00 1.72 3.70 0.00 NA NA NA 0.00 3.45 NA 0.00 NA NA NA 3.23 NA 0.00 0.00 K intron_retention CG9572 chrX + chrX_20044270_20044630 chrX_20044269_20044270;chrX_20044630_20044631 chrX_20044098_20044269;chrX_20044631_20044869 36.03 10.53 NA NA NA NA 41.67 36.36 28.00 NA NA 32.00 NA NA 63.64 NA NA 25.00 NA 31.43 NA NA 40.00 41.67 42.11 NA 35.71 NA 47.62 33.33 NA 44.44 36.84 43.75 35.71 NA 20.69 29.41 21.88 45.16 58.82 20.00 NA 23.08 37.04 40.74 30.77 65.00 50.00 35.00 22.22 NA NA 38.46 NA 31.58 25.00 38.89 K alternative_acceptor dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21308996_21310000;chr2L_21309084_21310000 chr2L_21309092_21310000 chr2L_21310001_21310009;chr2L_21308992_21308995 42.86 NA NA 50.00 NA NA 53.85 54.55 41.18 NA NA 23.08 NA NA NA 62.50 33.33 NA 37.50 33.33 NA 80.00 NA NA NA NA NA NA NA NA 50.00 NA 75.00 38.46 NA NA NA NA NA NA NA 40.00 NA NA NA 100.00 NA 73.33 35.71 NA NA NA NA NA 28.57 NA NA 42.86 K alternative_donor Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911755_5913354 chr2R_5911755_5913333 chr2R_5911703_5911754;chr2R_5913355_5913433 83.75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG9674,I_chr3L_16785451_16785540,I_chr3L_16785706_16785748,I_chr3L_16793055_16800660 chr3L - chr3L_16784791_16785540 chr3L_16784790_16784791;chr3L_16785540_16785541 chr3L_16784681_16784790;chr3L_16785541_16785640 4.45 4.12 2.91 1.69 4.97 3.82 4.59 3.12 4.58 4.43 1.31 4.28 4.88 6.29 5.29 4.84 5.08 1.13 5.32 3.55 1.40 6.83 5.76 5.03 9.17 3.31 4.23 1.98 4.13 4.45 4.86 4.63 3.41 4.35 6.06 3.31 4.19 3.66 4.96 3.41 4.73 4.19 3.05 6.84 4.02 6.58 5.24 5.63 4.26 4.73 6.78 3.31 7.37 5.75 3.77 4.48 3.43 6.74 N intron_retention CG14939,RI_chr2L_11812683_11813150 chr2L - chr2L_11811446_11811593 chr2L_11811445_11811446;chr2L_11811593_11811594 chr2L_11810098_11811445;chr2L_11811594_11812682 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 64.58 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette SMSr chr3L - chr3L_7368447_7373720 chr3L_7368447_7368504;chr3L_7369009_7373720 chr3L_7368505_7369008 chr3L_7368362_7368446;chr3L_7373721_7373998 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.23 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.97 100.00 98.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor key,I_chr2R_20674567_20674813,I_chr2R_20674654_20674897,RI_chr2R_20676692_20676888 chr2R - chr2R_20674654_20674897 chr2R_20674654_20674813 chr2R_20674554_20674653;chr2R_20674898_20674903 96.48 96.00 89.29 91.23 95.00 94.44 97.83 97.92 93.55 NA 86.96 92.73 90.32 96.67 90.00 92.19 100.00 87.50 96.88 89.29 100.00 97.06 100.00 100.00 94.12 94.44 100.00 92.86 100.00 94.74 88.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 92.31 92.98 100.00 96.00 93.33 100.00 100.00 100.00 96.15 100.00 100.00 100.00 95.24 94.74 96.30 100.00 100.00 96.67 K alternative_acceptor Acon,I_chr2L_21168805_21168878,I_chr2L_21168805_21170166 chr2L + chr2L_21168805_21170166;chr2L_21168805_21168878 chr2L_21168805_21170190 chr2L_21168705_21168804;chr2L_21170191_21170266 99.76 100.00 100.00 100.00 100.00 100.00 99.56 99.24 99.71 100.00 100.00 99.76 100.00 100.00 100.00 99.66 99.04 99.41 100.00 99.83 99.28 99.46 100.00 99.57 99.38 99.35 99.45 99.57 99.46 100.00 99.62 100.00 100.00 99.70 99.31 100.00 100.00 100.00 99.29 99.36 100.00 99.72 99.30 99.65 100.00 99.49 100.00 99.61 99.52 100.00 100.00 100.00 100.00 100.00 99.53 99.45 100.00 99.49 K jcn_only_AA ena chr2R + chr2R_15047541_15047756;chr2R_15047541_15047681;chr2R_15047541_15047753 chr2R_15047541_15047684 chr2R_15047496_15047540;chr2R_15047757_15048407 51.98 56.29 52.50 50.25 49.38 49.79 52.78 55.92 51.54 59.73 45.30 53.14 49.25 57.44 53.20 48.34 52.07 50.40 56.40 51.61 49.59 47.21 54.33 50.34 53.67 55.17 53.55 60.20 51.98 51.52 56.37 53.50 49.85 51.58 56.63 50.79 54.66 48.33 50.47 54.53 56.38 51.05 58.51 51.69 46.41 49.77 49.55 50.50 52.33 50.49 51.23 50.33 52.35 53.85 57.19 53.10 48.05 55.97 K alternative_donor Mnn1 chr2L + chr2L_7056537_7057347 chr2L_7057157_7057347 chr2L_7057348_7057674;chr2L_7056520_7056536 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 95.83 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 94.74 100.00 100.00 92.86 96.67 96.88 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 93.33 K alternative_acceptor tou,I_chr2R_7468394_7468453,RI_chr2R_7474644_7475275,I_chr2R_7479681_7491857,I_chr2R_7504956_7505020 chr2R - chr2R_7469255_7470519 chr2R_7469651_7470519 chr2R_7470520_7474530;chr2R_7469133_7469254 10.13 8.51 8.82 12.10 11.11 9.09 10.61 13.33 8.93 7.89 9.62 7.33 27.59 11.76 6.90 16.13 10.94 10.13 19.40 10.53 8.93 10.82 9.43 10.34 8.14 6.35 10.89 21.95 10.90 10.07 9.41 12.82 12.94 10.53 8.24 16.39 6.15 8.05 6.36 12.72 13.92 9.86 11.48 8.33 7.48 13.64 7.87 11.58 10.22 14.86 12.93 9.09 7.25 9.68 11.49 7.53 8.77 6.21 K intron_retention I_chr3L_3150858_3150927,I_chr3L_3151185_3151263,CG14956 chr3L + chr3L_3157142_3157199 chr3L_3157141_3157142;chr3L_3157199_3157200 chr3L_3155958_3157141;chr3L_3157200_3158408 2.27 0.00 0.00 7.50 0.00 0.00 12.50 0.00 1.28 0.00 0.00 0.00 6.25 4.76 6.25 7.41 4.00 0.00 0.00 3.12 0.00 10.34 2.60 0.00 0.00 3.85 6.25 9.26 19.35 8.00 0.00 0.00 4.62 0.00 0.00 2.38 6.90 0.00 2.99 2.70 0.00 3.39 0.00 6.25 2.17 0.00 5.77 0.00 5.88 0.00 2.99 3.33 5.77 5.17 2.27 0.00 1.54 0.00 K intron_retention RI_chr2L_4971343_4973718,CG8891,CG8892 chr2L - chr2L_4979086_4979144 chr2L_4979085_4979086;chr2L_4979144_4979145 chr2L_4978776_4979085;chr2L_4979145_4979360 0.00 0.37 0.00 3.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.32 0.00 0.00 0.00 0.00 1.37 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG33116,I_chr2L_19533887_19534154 chr2L + chr2L_19533887_19534154 chr2L_19533887_19534149 chr2L_19533787_19533886;chr2L_19534155_19534218 100.00 100.00 100.00 100.00 100.00 100.00 98.70 98.98 99.20 100.00 100.00 99.21 100.00 100.00 100.00 96.88 97.78 100.00 98.65 99.28 98.04 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 98.67 100.00 100.00 98.99 98.11 96.55 98.82 98.11 100.00 98.17 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 99.21 100.00 100.00 100.00 97.14 NA 97.12 100.00 100.00 100.00 K mutually_exclusive M(2)21AB,I_chr2L_110878_111037,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_110878_111906,chr2L_112020_112689 chr2L_110878_111004,chr2L_111118_112689 chr2L_111907_112019 chr2L_111005_111117 chr2L_110778_110877;chr2L_112690_112789 2.73 2.26 4.32 2.03 2.78 2.96 9.20 3.33 3.85 2.26 0.76 2.68 0.90 2.73 4.67 6.98 3.45 6.71 2.65 3.34 0.00 14.76 2.17 1.90 3.51 2.80 3.42 8.28 7.19 3.31 1.73 2.94 3.14 4.00 4.38 6.21 2.60 2.26 2.72 2.09 1.59 3.07 3.06 2.14 8.00 2.45 1.99 1.92 1.65 2.59 3.54 2.84 2.22 2.59 1.84 2.50 2.16 2.29 K cassette CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8175398_8176572;chr2L_8174699_8176572 chr2L_8175398_8175994,chr2L_8174699_8175994;chr2L_8176052_8176572 chr2L_8175995_8176051 chr2L_8174536_8174698;chr2L_8176573_8176806 33.71 32.19 33.71 49.75 31.29 32.68 26.63 42.34 37.18 45.56 43.66 38.18 36.43 43.08 32.43 40.21 62.88 54.41 31.18 43.00 43.17 31.62 29.13 32.07 25.74 32.80 26.70 35.16 30.91 41.10 30.49 46.51 41.55 38.39 32.37 18.31 32.85 35.29 32.80 33.16 43.14 35.88 40.71 29.39 24.56 34.65 33.01 53.15 36.36 45.12 33.14 31.88 32.20 28.57 41.05 26.32 32.73 41.18 K cassette gro chr3R + chr3R_21871550_21872454 chr3R_21871550_21872257;chr3R_21872315_21872454 chr3R_21872258_21872314 chr3R_21871451_21871549;chr3R_21872455_21872631 95.38 94.87 96.84 94.74 93.75 96.67 86.76 95.00 96.53 91.11 98.39 93.92 98.25 96.88 92.22 97.96 98.18 96.25 97.56 95.38 97.10 96.46 98.00 98.78 95.00 95.35 98.73 90.70 77.94 95.40 98.77 95.08 97.28 96.97 98.33 92.54 99.01 94.74 95.35 96.18 89.87 97.42 96.00 95.24 81.63 92.41 93.65 92.79 94.44 95.40 98.90 98.21 93.55 91.80 92.93 95.16 88.71 98.13 K multi_cassette I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499338_1501798 chr3L_1499338_1499771;chr3L_1499880_1500244;chr3L_1500389_1501350;chr3L_1501398_1501798 chr3L_1499772_1499879;chr3L_1500245_1500388;chr3L_1501351_1501397 chr3L_1499043_1499337;chr3L_1501799_1501892 4.71 3.03 0.00 6.45 2.08 1.92 0.00 7.69 4.55 5.00 11.11 9.09 27.78 5.56 4.17 3.17 4.00 2.27 4.35 4.71 9.09 7.55 7.02 5.66 7.89 1.37 7.02 6.52 2.27 6.98 8.82 2.08 5.71 2.25 6.12 11.43 4.76 3.57 4.76 3.12 2.56 4.00 3.92 5.88 3.70 7.25 6.00 3.37 2.97 6.35 8.22 6.12 0.00 3.23 4.62 7.41 4.00 2.94 K jcn_only_AA TORC chr3L - chr3L_17657734_17661206 chr3L_17657747_17661206 chr3L_17661207_17662333;chr3L_17652985_17657733 100.00 NA 100.00 100.00 NA 100.00 96.77 97.37 98.04 NA 100.00 97.83 NA 100.00 95.45 100.00 96.67 NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 100.00 NA NA 100.00 97.96 NA NA NA NA NA 100.00 NA 98.15 95.00 100.00 NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA 100.00 K alternative_acceptor gish chr3R + chr3R_12127074_12127544 chr3R_12127074_12127526 chr3R_12126967_12127073;chr3R_12127545_12127876 16.30 19.23 10.67 28.57 6.25 14.29 17.89 17.76 15.34 19.15 12.50 39.81 17.74 15.25 20.63 13.46 23.33 12.90 16.09 17.12 12.50 23.64 16.30 11.67 17.33 21.21 13.76 35.00 14.74 17.33 20.00 14.52 14.68 16.53 21.05 44.62 14.91 11.11 18.42 16.00 21.50 17.45 11.27 16.67 11.11 12.30 13.45 16.22 15.83 17.50 16.26 20.22 16.39 22.89 13.59 12.93 13.33 18.37 K jcn_only_AD CG7139,I_chr3L_22060948_22061000,I_chr3L_22063306_22063867 chr3L - chr3L_22060948_22061004 chr3L_22060948_22061000 chr3L_22060848_22060947;chr3L_22061005_22061100 0.00 2.50 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 1.96 0.00 0.00 0.00 0.00 2.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.92 0.00 0.00 2.44 0.00 1.49 0.00 0.00 1.23 0.00 0.00 1.15 0.00 1.11 0.00 0.00 0.00 0.00 2.04 0.00 0.00 1.49 3.23 0.00 0.00 2.50 1.72 0.00 2.00 1.69 K intron_retention dah,I_chrX_15223901_15223968,I_chrX_15232958_15233665 chrX + chrX_15224305_15224366 chrX_15224304_15224305;chrX_15224366_15224367 chrX_15224145_15224304;chrX_15224367_15225035 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA 9.68 0.00 NA 0.00 0.00 NA NA 4.55 NA NA 0.00 0.00 NA NA NA NA 14.29 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA K alternative_donor Eph,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_640804_640879;chr4_640676_640879 chr4_640734_640879 chr4_640880_640963;chr4_640576_640675 4.35 4.35 4.76 2.78 7.14 5.00 2.63 2.22 1.92 10.00 6.25 2.50 3.70 3.57 4.76 2.00 5.00 3.85 3.45 2.13 0.00 14.29 3.33 4.17 5.88 5.00 4.35 12.50 11.11 5.88 3.57 7.69 8.33 2.33 5.56 5.88 5.88 7.14 5.00 4.00 0.00 2.27 4.35 4.55 0.00 3.70 5.88 0.00 1.75 6.25 3.70 6.67 9.09 6.25 3.45 4.17 5.56 7.69 K intron_retention CG10602,mRpL13 chr2L - chr2L_18857404_18857587 chr2L_18857403_18857404;chr2L_18857587_18857588 chr2L_18857177_18857403;chr2L_18857588_18857700 0.00 0.00 4.35 5.56 0.00 0.00 15.38 4.65 0.00 NA 4.55 2.38 NA 0.00 8.33 0.00 0.00 0.00 0.00 5.26 NA 0.00 4.88 0.00 0.00 4.76 7.14 0.00 13.64 9.09 7.41 NA 6.67 7.32 7.14 6.67 0.00 0.00 0.00 5.56 0.00 6.90 0.00 0.00 0.00 0.00 11.11 0.00 3.77 0.00 0.00 0.00 0.00 NA 3.03 0.00 0.00 6.67 K alternative_donor CG41378,I_chr2RHet_1545717_1621473,I_chr2RHet_1545717_1621569,I_chr2RHet_1606049_1607768,RI_chr2RHet_1606049_1621284,noncoding_9480 chr2RHet - chr2RHet_1606049_1621473;chr2RHet_1606049_1621636 chr2RHet_1606049_1621569 chr2RHet_1605949_1606048;chr2RHet_1621637_1621662 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 2.56 NA 0.00 2.50 7.14 5.26 0.00 0.00 0.00 9.09 5.26 3.12 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 7.14 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 11.11 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 K jcn_only_AD drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9390195;chr2R_9389597_9390151;chr2R_9389597_9389907;chr2R_9389597_9389940;chr2R_9389597_9390293;chr2R_9389597_9389751;chr2R_9389597_9390264;chr2R_9389597_9389753 chr2R_9389597_9389757 chr2R_9389497_9389596;chr2R_9390294_9390295 1.10 1.61 3.49 1.96 2.17 5.26 0.85 2.70 0.62 0.00 0.00 1.75 0.00 0.00 2.41 0.87 0.00 1.10 2.13 2.62 0.00 0.00 2.83 0.00 0.00 2.74 0.00 0.00 0.00 0.00 4.71 0.00 2.33 0.83 1.67 0.00 0.00 0.00 1.67 1.92 0.00 0.00 4.88 3.12 5.26 1.64 2.35 0.00 2.24 0.00 2.78 4.62 0.00 0.00 1.19 1.67 1.90 0.00 K intron_retention CG1399,I_chr2R_3574133_3574191 chr2R - chr2R_3565240_3565310 chr2R_3565239_3565240;chr2R_3565310_3565311 chr2R_3564840_3565239;chr2R_3565311_3565909 90.48 96.08 93.18 96.25 84.09 87.50 82.93 98.84 88.28 79.55 76.67 92.21 90.48 89.74 88.57 100.00 87.72 94.87 90.16 91.09 84.21 80.00 92.50 98.33 93.88 90.00 88.00 90.91 94.83 90.74 94.12 91.49 88.89 89.89 90.24 96.83 92.00 84.09 93.33 90.00 78.85 88.54 90.24 95.52 95.65 90.00 88.14 96.83 95.60 89.16 90.41 93.62 88.89 95.35 88.14 91.49 90.62 95.89 K jcn_only_AD lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3955872_3957375;chr2R_3955788_3957375;chr2R_3955517_3957375 chr2R_3955586_3957375 chr2R_3957376_3957784;chr2R_3955509_3955516 2.68 2.56 2.47 2.68 0.00 0.00 1.43 2.11 0.50 4.76 1.23 0.78 1.37 5.26 1.85 2.94 6.25 1.35 4.11 3.55 4.69 10.81 NA NA NA 0.00 NA NA 11.11 8.33 3.16 0.00 5.33 2.38 4.00 NA 6.67 NA NA 2.99 16.00 2.25 1.45 4.55 1.56 NA NA 5.71 5.31 NA NA NA 2.63 NA 2.68 NA NA 0.00 K jcn_only_AD CG31635,I_chr2L_6639349_6639396,I_chr2L_6646948_6648945 chr2L - chr2L_6637025_6637977 chr2L_6637025_6637433 chr2L_6635653_6637024 0.00 NA NA 0.00 NA NA NA 0.00 0.00 0.00 NA 2.63 NA 0.00 NA NA NA NA NA 0.00 NA 0.00 11.36 0.00 NA NA 0.00 3.03 0.00 0.00 NA NA NA 0.00 5.00 NA 2.17 0.00 0.00 0.00 NA 0.00 NA 2.63 NA 4.35 0.00 NA NA 0.00 0.00 NA NA 4.35 NA 0.00 7.69 NA K alternative_donor wun2,I_chr2R_5304606_5304660 chr2R + chr2R_5305074_5305137 chr2R_5305077_5305137 chr2R_5305138_5305166;chr2R_5305008_5305073 98.44 98.92 98.59 100.00 100.00 94.44 100.00 98.63 97.81 100.00 95.74 97.00 100.00 98.46 98.53 98.90 97.50 100.00 96.00 99.24 98.36 98.10 100.00 97.06 99.04 100.00 98.63 97.96 97.14 100.00 99.15 98.00 98.04 98.85 97.85 98.44 96.81 98.65 100.00 98.59 98.41 97.69 97.96 96.47 99.05 99.43 97.89 97.44 98.23 96.43 99.22 98.63 97.37 97.96 96.59 99.07 96.59 95.65 K intron_retention CG1888 chr2R - chr2R_5433802_5434230 chr2R_5433801_5433802;chr2R_5434230_5434231 chr2R_5432690_5433801;chr2R_5434231_5434457 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 4.65 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 3.92 0.00 2.20 0.00 0.00 0.00 0.00 2.27 0.00 2.47 1.56 0.00 1.08 1.98 1.98 3.61 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 5.00 2.04 1.02 0.00 0.00 0.00 0.00 2.82 0.00 0.00 K intron_retention MED31,CG18271,I_chr3R_468381_468483,CE_chr3R_468381_468504 chr3R + chr3R_467731_468005 chr3R_467730_467731;chr3R_468005_468006 chr3R_467702_467730;chr3R_468006_468133 41.78 43.40 40.58 53.76 46.34 40.74 69.05 31.25 36.65 26.87 25.76 43.20 35.53 41.89 43.90 53.33 42.31 39.71 45.71 34.36 34.48 75.00 32.18 60.78 52.17 58.18 49.18 47.62 62.67 27.78 45.45 44.33 51.76 48.94 35.59 16.67 25.53 38.00 36.76 39.61 44.76 41.53 56.00 34.74 50.00 33.94 32.04 41.78 41.67 43.90 50.00 42.59 41.98 35.62 40.79 40.26 36.92 35.24 K alternative_donor CG15134 chr2L + chr2L_16904611_16905298;chr2L_16904662_16905298 chr2L_16904713_16905298 chr2L_16905299_16905389;chr2L_16904460_16904610 86.67 87.50 91.30 85.00 80.95 80.77 94.12 90.70 95.56 61.54 88.89 82.93 95.45 92.59 96.67 93.10 83.33 85.71 100.00 92.31 85.71 81.08 84.21 95.45 85.00 92.59 73.91 84.62 86.36 88.89 93.55 66.67 66.67 90.38 86.36 85.00 100.00 83.33 87.50 96.97 90.00 93.62 90.48 73.91 100.00 81.82 83.33 81.58 89.74 77.78 86.67 86.67 87.50 100.00 82.35 57.14 80.00 69.23 K intron_retention Grip84 chrX - chrX_19458152_19458218 chrX_19458151_19458152;chrX_19458218_19458219 chrX_19457109_19458151;chrX_19458219_19458725 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor stau,I_chr2R_14010368_14010685 chr2R - chr2R_14007906_14007971 chr2R_14007909_14007971 chr2R_14007972_14008169;chr2R_14007529_14007905 66.67 75.00 65.00 68.97 58.82 60.87 64.00 66.67 71.43 NA 71.43 62.07 83.33 76.47 66.67 65.00 76.47 86.67 65.00 58.14 68.75 65.52 71.43 63.16 71.43 62.50 62.50 72.22 66.67 59.09 80.00 66.67 62.07 61.54 71.43 66.67 65.00 61.54 73.68 58.33 54.55 78.57 66.67 64.00 61.11 57.14 58.82 65.71 66.67 73.33 60.87 80.00 50.00 80.00 70.00 66.67 NA 55.56 K alternative_donor stck,I_chr3R_4184313_4184380,I_chr3R_4184660_4184730 chr3R + chr3R_4184660_4184730 chr3R_4184677_4184730 chr3R_4184731_4184799;chr3R_4184594_4184659 100.00 98.44 100.00 100.00 100.00 98.39 100.00 100.00 99.06 100.00 100.00 99.04 100.00 100.00 100.00 100.00 97.44 100.00 100.00 99.12 100.00 100.00 99.10 98.82 100.00 96.77 98.88 97.96 98.59 100.00 100.00 98.04 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 98.31 100.00 100.00 100.00 98.65 100.00 100.00 100.00 99.05 100.00 100.00 98.11 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG6388 chr2L + chr2L_12428598_12428660 chr2L_12428597_12428598;chr2L_12428660_12428661 chr2L_12428143_12428597;chr2L_12428661_12429740 0.00 0.00 0.00 2.82 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 2.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 12.00 0.00 0.00 0.00 0.00 3.61 6.98 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor mRpS30,I_chrX_15680663_15680821 chrX + chrX_15680663_15680826 chrX_15680663_15680821 chrX_15680563_15680662;chrX_15680827_15680921 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 2.65 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.68 0.00 2.11 0.98 0.00 0.00 1.59 0.00 0.00 0.00 0.00 4.76 0.00 0.52 2.35 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.83 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 1.09 0.00 K jcn_only_AA nej,RI_chrX_9578185_9581011 chrX - chrX_9575225_9575306 chrX_9575243_9575306 chrX_9575307_9575675;chrX_9571169_9575224 11.71 8.33 15.69 11.83 11.49 8.97 7.61 15.18 14.20 13.40 26.39 10.06 6.90 11.96 9.64 15.29 7.94 11.59 13.43 10.13 12.07 16.35 10.74 15.09 12.86 15.48 9.35 11.27 9.84 17.32 8.00 13.33 16.45 16.07 15.38 14.52 8.82 6.98 7.35 6.85 7.41 15.71 8.51 6.15 8.00 7.69 13.89 15.42 10.64 9.76 6.80 18.97 4.65 NA 17.82 14.29 16.67 17.39 K jcn_only_AD gb,I_chr3R_22936370_22936994 chr3R - chr3R_22936370_22936994 chr3R_22936370_22936992 chr3R_22936270_22936369;chr3R_22936995_22937094 100.00 100.00 97.65 99.28 100.00 100.00 98.82 100.00 99.54 100.00 100.00 100.00 100.00 100.00 98.98 100.00 100.00 100.00 100.00 100.00 98.80 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.13 100.00 100.00 100.00 100.00 98.41 100.00 100.00 98.92 100.00 99.38 98.53 99.43 100.00 100.00 100.00 100.00 98.55 100.00 98.65 96.72 100.00 98.89 100.00 100.00 100.00 98.48 100.00 99.19 K jcn_only_AA gish chr3R + chr3R_12127074_12127544 chr3R_12127074_12127526 chr3R_12126967_12127073;chr3R_12127545_12127876 25.78 32.03 19.30 38.10 13.54 20.55 24.65 26.06 22.45 33.75 18.29 54.77 26.80 24.18 29.59 18.42 35.35 21.28 23.48 25.78 24.68 35.20 27.78 19.34 29.17 28.00 20.73 50.46 26.32 26.72 28.78 22.34 23.21 24.73 33.60 60.80 22.99 19.33 32.28 25.64 33.33 26.72 17.14 28.22 16.98 19.13 24.47 23.42 25.00 28.65 26.42 31.47 29.70 35.04 18.00 21.91 20.88 26.49 K alternative_donor Ucp4A chrX + chrX_17739432_17739522;chrX_17739458_17739522;chrX_17739394_17739522 chrX_17739454_17739522 chrX_17739523_17739558;chrX_17739094_17739393 62.83 54.55 45.45 NA NA NA 80.00 44.44 63.64 NA NA 64.29 NA NA 44.44 22.22 NA 50.00 42.86 72.73 NA NA 73.68 57.14 40.00 NA 69.23 44.44 NA 57.14 38.10 75.00 63.64 69.23 60.00 35.00 63.64 46.15 68.75 62.50 85.71 56.25 83.33 83.33 70.00 69.23 66.67 63.64 58.33 60.00 63.16 55.56 71.43 72.73 55.56 50.00 66.67 NA K intron_retention CG33523,RI_chr3L_5920177_5921323 chr3L + chr3L_5920167_5921636 chr3L_5920166_5920167;chr3L_5921636_5921637 chr3L_5920077_5920166;chr3L_5921637_5921740 25.00 NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Fis1,I_chr2R_1491917_1492087,I_chr2R_1492154_1492214 chr2R - chr2R_1492156_1492214 chr2R_1492155_1492156;chr2R_1492214_1492215 chr2R_1492094_1492155;chr2R_1492215_1492311 16.39 16.28 15.96 40.36 23.91 21.67 20.81 12.69 25.00 19.35 16.67 15.85 11.71 24.21 20.00 21.79 22.08 16.39 13.85 13.08 18.84 5.88 14.91 11.58 18.87 23.91 19.70 25.71 40.00 10.00 21.19 16.98 16.28 18.62 13.75 41.30 12.28 12.50 10.94 16.00 20.51 20.51 20.69 12.61 13.33 8.96 6.15 17.14 17.57 14.29 10.71 17.07 11.39 6.14 16.09 11.86 16.33 20.99 K intron_retention Bruce chr3R - chr3R_6155724_6156689 chr3R_6155723_6155724;chr3R_6156689_6156690 chr3R_6155472_6155723;chr3R_6156690_6157027 5.88 11.11 5.56 4.39 7.14 5.00 7.22 4.95 6.34 11.11 11.76 3.79 18.87 3.45 6.56 3.12 4.17 8.00 6.67 6.19 4.65 15.56 6.06 20.00 3.45 5.66 9.26 15.38 26.09 5.13 4.55 NA 4.35 4.21 7.41 2.04 5.41 11.11 5.13 15.38 NA 5.69 5.00 8.70 NA NA NA 6.45 5.68 NA 1.92 9.52 NA NA 5.00 NA NA NA K intron_retention lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3963608_3965235 chr2R_3963607_3963608;chr2R_3965235_3965236 chr2R_3963365_3963607;chr2R_3965236_3966123 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 93.33 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 94.44 NA 100.00 92.86 100.00 100.00 100.00 NA K intron_retention CG33232,I_chr3L_2484838_2495010,CG1146,noncoding_10153 chr3L + chr3L_2488891_2490979 chr3L_2488890_2488891;chr3L_2490979_2490980 chr3L_2488838_2488890;chr3L_2490980_2492250 100.00 NA NA 100.00 NA NA 100.00 92.31 100.00 NA NA 100.00 NA NA NA 100.00 NA NA 100.00 100.00 NA 90.91 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA 100.00 100.00 NA NA NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 88.89 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA K jcn_only_AD LIMK1,I_chrX_12488942_12489000 chrX - chrX_12484518_12486000;chrX_12484518_12486079 chrX_12484518_12485963 chrX_12483874_12484517;chrX_12486080_12486162 83.64 78.43 87.23 77.38 83.87 77.08 86.76 85.57 76.19 94.59 77.78 85.87 75.00 74.51 87.50 82.26 86.27 81.03 82.00 76.70 81.40 64.56 87.80 85.19 74.19 85.00 91.23 93.48 75.95 76.27 82.05 86.36 68.75 89.22 78.18 76.36 90.79 92.31 82.26 87.50 81.48 72.38 78.38 89.83 88.00 88.89 87.88 77.78 83.67 NA 84.15 81.82 NA NA 83.61 90.00 88.46 84.09 K alternative_donor CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20824602_20825271;chr2L_20824494_20825271;chr2L_20824631_20825271 chr2L_20824725_20825271 chr2L_20825272_20825366;chr2L_20824482_20824493 11.11 NA 0.00 7.14 NA NA 20.00 16.67 11.76 NA 6.25 22.22 NA 0.00 NA 11.11 NA 0.00 14.29 11.76 0.00 NA NA NA NA 14.29 NA NA 16.67 0.00 9.09 0.00 12.50 20.00 NA 14.29 NA NA NA 4.55 14.29 5.56 16.67 11.11 0.00 8.33 NA 5.56 13.33 NA NA NA NA NA 11.11 NA NA 8.33 K cassette step,F_chr2L_21743072_21746336,I_chr2L_21743972_21757163,RI_chr2L_21747333_21756553 chr2L - chr2L_21743972_21753218;chr2L_21743972_21756553 chr2L_21743972_21746151;chr2L_21747333_21756553,chr2L_21747333_21753218 chr2L_21746152_21747332 chr2L_21743872_21743971;chr2L_21756554_21756559 73.08 68.60 75.29 71.43 72.60 73.75 66.95 70.42 74.44 69.01 76.06 74.42 68.24 69.14 67.68 67.16 67.50 82.35 75.29 72.83 70.15 90.27 69.47 72.55 70.42 70.89 69.05 82.42 85.57 80.00 68.82 73.85 78.29 72.06 76.25 79.80 77.67 68.54 74.26 75.69 84.72 71.52 68.83 77.17 86.15 81.13 72.86 85.35 76.02 73.75 70.49 70.13 81.36 69.39 73.08 69.23 85.71 83.33 K jcn_only_AA CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042888_5042960;chr2L_5042891_5042960 chr2L_5042885_5042960 chr2L_5042961_5043016;chr2L_5042835_5042884 1.52 4.21 3.23 0.00 3.85 2.70 1.88 5.56 1.51 1.33 0.00 1.22 3.70 1.22 1.28 1.21 3.51 1.45 0.94 0.93 3.77 0.95 0.00 1.74 2.11 0.00 4.21 3.66 4.55 0.91 2.86 0.00 1.68 0.00 0.97 2.30 0.00 1.47 1.77 1.83 2.22 1.37 0.00 2.07 2.26 0.55 0.98 1.52 2.29 0.00 3.05 4.48 1.85 1.30 2.20 4.90 0.00 1.00 K intron_retention CG9795,I_chr3R_149612_149686,RI_chr3R_149612_150058 chr3R + chr3R_149612_149674 chr3R_149611_149612;chr3R_149674_149675 chr3R_149512_149611;chr3R_149675_149886 0.00 3.12 0.00 6.82 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 6.45 3.03 0.00 0.00 0.00 0.00 3.03 NA 0.00 0.00 0.00 0.00 0.00 3.12 NA 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_donor CG1494 chrX + chrX_21159081_21159147;chrX_21159059_21159147 chrX_21158242_21159147 chrX_21159148_21159527;chrX_21157788_21158241 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4996,E_chr2R_13627553_13627643,I_chr2R_13629549_13629609 chr2R + chr2R_13630490_13630556 chr2R_13630489_13630490;chr2R_13630556_13630557 chr2R_13630377_13630489;chr2R_13630557_13631408 0.00 0.00 0.00 5.41 0.00 0.00 3.85 10.34 2.22 0.00 5.26 12.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 3.57 0.00 0.00 0.00 0.00 3.85 NA 0.00 0.00 13.04 NA 3.85 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.38 0.00 0.00 0.00 9.52 0.00 0.00 0.00 0.00 0.00 0.00 NA 7.69 0.00 0.00 0.00 K jcn_only_AD CG7536,I_chrX_17976413_17979287,I_chrX_17976413_17979359 chrX - chrX_17976413_17979230 chrX_17976413_17979226 chrX_17976313_17976412;chrX_17979231_17979526 40.35 31.82 38.33 38.89 42.62 43.48 43.06 43.42 45.96 61.36 38.46 41.57 25.93 54.55 27.27 40.35 29.41 29.17 35.29 34.19 46.97 37.31 42.86 38.16 42.62 37.04 37.62 57.78 45.83 47.25 32.69 37.84 46.15 42.05 49.12 36.84 40.21 40.91 40.57 23.62 40.82 33.59 35.56 31.30 42.50 37.66 43.33 42.11 47.66 45.28 42.68 39.53 26.09 55.26 39.71 46.81 22.22 24.39 K jcn_only_AD CG15609,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12902708_12903184;chr2R_12902708_12903163;chr2R_12902708_12903167 chr2R_12902708_12903198 chr2R_12902608_12902707;chr2R_12903199_12903284 1.00 3.23 0.00 1.14 0.00 5.13 5.08 2.04 0.86 0.00 4.00 0.00 1.59 0.00 3.12 2.13 0.00 0.00 2.13 2.74 0.00 0.00 0.00 0.00 0.00 0.00 2.70 NA 0.00 3.85 1.45 4.17 0.00 2.15 0.00 0.00 4.76 20.00 NA 2.82 0.00 0.00 0.00 6.38 NA 0.00 NA 1.69 1.27 4.76 2.13 0.00 NA NA 1.85 0.00 NA 0.00 N alternative_donor mfrn,I_chr3R_23770737_23770817,I_chr3R_23771063_23771153,I_chr3R_23771063_23772599 chr3R - chr3R_23771063_23771137;chr3R_23771063_23771153 chr3R_23771063_23772915 chr3R_23770974_23771062;chr3R_23772916_23773724 90.00 92.06 88.71 85.90 91.11 88.46 87.62 82.61 88.11 89.74 93.85 86.27 89.13 87.23 89.71 84.31 89.80 89.58 88.52 84.89 90.91 73.08 89.83 90.65 84.00 91.30 83.33 87.37 90.98 91.01 90.68 92.31 93.13 85.39 89.47 90.00 91.06 93.83 95.28 92.13 95.00 87.29 88.37 93.00 96.26 93.00 93.33 90.37 88.00 91.86 88.46 89.39 93.65 94.12 90.28 92.86 95.56 94.96 K jcn_only_AA lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22817840_22817968;chr2L_22817840_22817943 chr2L_22817840_22817891 chr2L_22817740_22817839;chr2L_22817969_22817982 97.91 97.62 96.30 90.00 96.67 95.35 97.94 96.88 98.60 95.83 96.97 98.92 98.82 100.00 100.00 99.09 93.10 100.00 96.97 92.94 96.00 97.87 98.28 100.00 100.00 100.00 98.89 100.00 100.00 96.67 95.95 100.00 100.00 99.07 97.87 95.92 93.55 100.00 100.00 97.73 100.00 95.24 98.28 100.00 NA 97.56 94.44 97.10 99.02 96.23 100.00 97.87 100.00 96.00 98.18 97.87 96.83 100.00 K intron_retention CG13893,I_chr3L_600913_601954 chr3L - chr3L_600483_600546 chr3L_600482_600483;chr3L_600546_600547 chr3L_600022_600482;chr3L_600547_600664 0.00 0.00 3.92 0.00 0.00 0.00 3.51 0.00 4.04 0.00 0.00 0.00 0.00 0.00 3.64 0.00 5.26 0.00 4.17 0.00 0.00 6.98 2.04 0.00 0.00 0.00 3.30 7.46 3.70 0.00 2.44 2.27 1.56 0.00 0.00 1.47 0.00 0.00 2.38 2.11 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 1.10 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA lig,CI_chr2R_3962006_3962916,I_chr2R_3962357_3962977,RI_chr2R_3962875_3962977 chr2R + chr2R_3962006_3962980 chr2R_3962006_3962977 chr2R_3961906_3962005;chr2R_3962981_3963016 99.63 98.48 99.35 99.78 100.00 100.00 100.00 99.58 99.33 100.00 100.00 99.60 97.72 99.58 100.00 100.00 98.92 98.66 99.05 100.00 99.67 99.61 100.00 99.73 98.62 99.36 100.00 99.34 99.19 99.72 99.67 99.59 99.53 100.00 99.63 99.67 99.54 98.07 99.80 99.75 100.00 99.68 99.51 99.64 100.00 100.00 98.89 99.32 99.38 99.48 99.77 98.95 99.49 100.00 99.73 99.35 99.63 99.68 K alternative_donor Vap-33-1 chrX + chrX_3843206_3843513;chrX_3843210_3843513;chrX_3843099_3843513;chrX_3843406_3843513 chrX_3843214_3843513 chrX_3843514_3843746;chrX_3843030_3843098 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 1.63 0.00 0.00 1.19 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 2.17 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 5.71 0.00 0.00 0.00 0.00 0.00 2.17 0.00 K jcn_only_AA CG18854,I_chr2L_9790307_9790615,I_chr2L_9790310_9790453,I_chr2L_9790310_9790556 chr2L - chr2L_9790307_9790615 chr2L_9790310_9790615 chr2L_9790616_9790656;chr2L_9790210_9790306 99.66 99.70 100.00 99.35 100.00 100.00 99.66 99.62 99.56 100.00 99.33 99.54 99.54 100.00 99.45 99.76 99.74 100.00 99.45 99.77 99.68 99.13 99.61 99.81 99.49 100.00 98.91 99.59 99.70 99.61 99.83 100.00 99.15 100.00 99.05 99.65 99.39 100.00 99.80 98.78 100.00 99.58 100.00 100.00 98.04 99.68 99.34 99.44 99.29 99.66 99.30 100.00 100.00 100.00 100.00 99.69 99.07 99.46 K mutually_exclusive srp,I_chr3R_11825782_11827473,I_chr3R_11826508_11826910 chr3R + chr3R_11825782_11826910,chr3R_11827129_11827473 chr3R_11825782_11826334,chr3R_11826508_11827473 chr3R_11826911_11827128 chr3R_11826335_11826507 chr3R_11825682_11825781;chr3R_11827474_11827573 33.02 27.52 33.65 35.43 34.12 33.70 40.00 42.31 36.84 22.64 30.77 29.05 35.80 36.05 35.45 45.10 36.49 36.56 46.94 33.74 25.00 29.72 28.17 23.18 21.92 37.65 33.70 26.92 34.15 34.42 36.14 35.16 36.30 32.91 26.80 30.90 24.18 20.25 21.14 31.92 28.46 31.42 37.80 37.79 25.84 34.66 26.24 35.59 33.02 29.95 29.70 29.00 25.79 22.06 35.51 27.10 29.73 36.82 K alternative_acceptor lkb1 chr3R + chr3R_9504789_9504862;chr3R_9504789_9504847 chr3R_9504789_9504872 chr3R_9504472_9504788;chr3R_9504873_9505152 4.17 4.35 6.25 3.23 9.09 0.00 4.17 3.57 5.71 12.50 10.00 0.00 6.25 6.67 4.76 8.33 0.00 25.00 11.11 2.86 0.00 5.00 NA 0.00 0.00 0.00 5.00 6.67 5.26 0.00 6.25 5.88 0.00 7.69 7.69 NA 6.25 0.00 0.00 3.23 0.00 3.85 NA 0.00 4.00 0.00 8.70 4.76 2.86 0.00 5.00 NA NA 4.00 NA 4.17 2.78 0.00 K jcn_only_AA TepII,I_chr2L_7696207_7698724,I_chr2L_7696808_7697006,I_chr2L_7697158_7697976 chr2L - chr2L_7696207_7697006 chr2L_7696808_7697006 chr2L_7697007_7697106 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA 5.41 0.00 0.00 NA NA NA NA NA NA 3.03 NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA 3.57 NA 0.00 NA N jcn_only_AD Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11835112_11835668;chr2R_11835112_11835509 chr2R_11835112_11835624 chr2R_11834432_11835111;chr2R_11835669_11836215 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Galpha49B,I_chr2R_8501587_8501648,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500390_8501759;chr2R_8500390_8501071 chr2R_8500390_8501648 chr2R_8500380_8500389;chr2R_8501760_8501850 3.33 NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG30035 chr2R + chr2R_7558686_7560221 chr2R_7558685_7558686;chr2R_7560221_7560222 chr2R_7558535_7558685;chr2R_7560222_7560347 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.52 4.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 2.13 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 5.56 K intron_retention CG31368,F_chr3R_7709658_7714233 chr3R + chr3R_7709658_7714215 chr3R_7709657_7709658;chr3R_7714215_7714216 chr3R_7709585_7709657;chr3R_7714216_7715250 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA 7.69 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 6.25 0.00 0.00 0.00 0.00 NA NA 11.11 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention p38b chr2L + chr2L_13780765_13780866 chr2L_13780764_13780765;chr2L_13780866_13780867 chr2L_13780502_13780764;chr2L_13780867_13782615 0.00 0.00 0.00 7.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 11.76 NA NA NA 0.00 NA 17.65 7.32 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 3.12 3.70 0.00 1.79 0.00 NA 4.48 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 K jcn_only_AD PhKgamma,I_chrX_11590179_11590249,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11590345_11590435;chrX_11590179_11590435 chrX_11589973_11590435 chrX_11590436_11590535;chrX_11589857_11589972 59.09 73.91 NA NA NA NA NA 52.38 63.89 50.00 NA 62.50 NA NA NA NA NA NA NA 50.00 NA 39.13 65.52 68.42 54.55 NA 52.00 62.50 48.00 NA NA NA NA NA NA NA 66.67 78.57 52.00 55.00 NA 82.05 NA 34.78 NA 59.09 NA 50.00 NA 79.31 53.12 63.64 NA NA NA 59.09 NA NA K intron_retention par-1,I_chr2R_15365210_15370456 chr2R + chr2R_15370792_15370853 chr2R_15370791_15370792;chr2R_15370853_15370854 chr2R_15370673_15370791;chr2R_15370854_15371978 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention CG1673 chrX + chrX_13294195_13294879 chrX_13294194_13294195;chrX_13294879_13294880 chrX_13294040_13294194;chrX_13294880_13295313 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 57.14 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA K intron_retention Edc3,psnoRNA:Edc3-a chr3L - chr3L_17521721_17522008 chr3L_17521720_17521721;chr3L_17522008_17522009 chr3L_17520806_17521720;chr3L_17522009_17522672 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 K alternative_acceptor maf-S,CG11110 chr2R + chr2R_16528624_16528685;chr2R_16528624_16528670 chr2R_16528624_16528673 chr2R_16528563_16528623;chr2R_16528686_16529179 1.20 0.00 1.27 1.80 0.00 0.00 1.64 0.83 1.59 4.76 0.00 0.00 0.00 0.00 0.00 1.71 1.75 1.72 2.50 0.00 0.00 1.08 0.00 2.17 2.00 0.00 1.92 5.26 0.00 0.00 0.00 0.93 1.92 0.92 1.61 1.96 1.59 0.00 1.20 1.30 1.25 1.55 0.00 0.00 0.98 1.56 2.63 0.00 1.67 0.00 1.56 2.63 2.38 0.00 1.15 1.52 1.25 0.62 K intron_retention CG5844 chr3R + chr3R_8260925_8260983 chr3R_8260924_8260925;chr3R_8260983_8260984 chr3R_8260139_8260924;chr3R_8260984_8261371 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.21 0.00 0.00 0.00 0.00 0.61 2.72 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA TepIV,EI_chr2L_19548696_19549582 chr2L + chr2L_19548696_19551681;chr2L_19548696_19549582 chr2L_19548696_19549858 chr2L_19548596_19548695 85.71 88.46 65.38 64.00 100.00 90.91 86.79 81.37 89.36 95.45 NA 74.07 76.92 85.37 78.05 88.61 94.29 NA 88.24 85.42 87.10 92.77 65.79 88.89 92.31 82.22 89.19 75.57 62.90 85.00 84.09 NA NA 83.78 83.33 89.47 87.23 88.57 89.74 85.71 NA 87.50 85.29 85.07 NA 85.00 95.24 80.00 78.75 88.89 72.62 83.78 NA NA 89.47 NA 88.89 NA K jcn_only_AA TMS1 chr3L + chr3L_16407594_16407905;chr3L_16407594_16407914;chr3L_16407594_16407893;chr3L_16407594_16407902 chr3L_16407594_16407920 chr3L_16407384_16407593;chr3L_16407921_16408056 0.80 0.00 1.01 0.50 1.49 0.88 0.79 1.00 0.62 1.00 0.93 1.02 0.74 0.29 0.18 0.22 0.80 0.69 1.45 0.93 0.75 0.54 0.46 0.90 0.78 0.66 0.83 1.61 0.61 0.76 0.42 0.59 0.50 0.99 0.97 1.46 1.60 0.87 0.80 0.76 0.81 0.68 1.17 0.83 0.94 0.43 0.69 1.45 0.58 0.98 1.09 0.34 0.53 0.26 1.35 0.89 0.94 1.46 K alternative_acceptor CG3887 chr2L + chr2L_5011132_5011183 chr2L_5011132_5011175 chr2L_5011056_5011131;chr2L_5011184_5011335 98.94 98.89 99.01 99.14 98.95 98.61 98.10 97.32 97.17 100.00 98.90 99.43 98.78 97.75 99.03 98.17 97.44 96.59 99.07 98.48 98.95 100.00 100.00 98.92 100.00 98.95 100.00 100.00 100.00 100.00 98.97 97.67 98.46 98.68 100.00 100.00 98.94 100.00 100.00 98.73 97.56 99.36 97.37 100.00 98.39 98.77 99.04 96.15 97.39 98.86 100.00 98.31 99.19 100.00 97.12 98.73 100.00 98.70 K intron_retention CG5466,CI_chr3R_16445355_16445583 chr3R + chr3R_16445805_16445883 chr3R_16445804_16445805;chr3R_16445883_16445884 chr3R_16445584_16445804;chr3R_16445884_16446914 7.69 NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 15.38 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG2246,I_chr3R_26421344_26425985,RI_chr3R_26421349_26425985,I_chr3R_26421349_26427017,noncoding_20201 chr3R - chr3R_26421344_26425845 chr3R_26421349_26425845 chr3R_26425846_26425897;chr3R_26421249_26421343 84.10 76.92 81.25 70.00 66.67 92.31 85.00 75.00 90.91 NA NA 84.00 77.78 90.00 84.21 81.25 90.00 87.50 78.57 81.08 90.00 92.31 71.43 87.50 88.89 91.67 90.91 87.50 66.67 NA 75.00 70.00 87.50 95.00 61.54 91.67 73.68 80.00 91.67 90.91 77.78 81.82 90.00 80.00 92.86 88.24 76.19 88.89 96.67 94.74 94.12 63.64 77.78 90.91 78.95 70.00 74.07 76.92 K intron_retention shep,I_chr3L_5157070_5160067,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5160160_5161343 chr3L_5160159_5160160;chr3L_5161343_5161344 chr3L_5160068_5160159;chr3L_5161344_5161402 2.04 5.66 3.88 3.10 3.33 0.00 3.12 2.86 3.57 3.57 0.00 4.20 3.19 2.35 3.81 2.67 0.00 0.00 0.00 2.38 3.23 5.66 1.67 2.27 0.00 0.00 3.70 0.00 0.00 0.00 3.85 0.00 0.00 4.48 2.17 0.00 2.04 0.00 0.00 1.59 0.00 2.47 4.65 0.00 0.00 0.00 4.44 15.38 2.26 0.00 0.00 0.00 0.00 0.00 3.88 0.00 7.41 0.00 K cassette CG6191 chr2R - chr2R_9469372_9470303 chr2R_9469372_9469666;chr2R_9469700_9470303 chr2R_9469667_9469699 chr2R_9469254_9469371;chr2R_9470304_9470452 1.03 0.00 1.82 2.22 0.00 0.00 1.43 0.00 1.00 4.55 0.00 1.32 2.70 0.00 0.00 1.41 0.00 0.00 0.00 1.03 2.33 5.26 1.96 1.92 0.00 2.44 2.27 0.00 0.00 2.63 1.32 2.63 0.00 1.12 4.00 0.00 2.22 2.70 2.13 1.92 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 1.02 2.17 1.67 3.03 0.00 0.00 0.00 2.86 0.00 2.94 K jcn_only_AA nxf2,I_chr3L_16573041_16573135 chr3L - chr3L_16571566_16571675 chr3L_16571614_16571675 chr3L_16571676_16571777;chr3L_16570731_16571565 96.06 NA NA NA NA NA NA NA 95.83 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 95.45 NA NA NA NA NA 91.67 NA NA 92.31 NA NA NA 100.00 NA 96.30 NA NA NA NA 100.00 NA NA NA 95.24 NA NA NA NA NA NA 100.00 K jcn_only_AD Bsg25D,I_chr2L_5277665_5277933 chr2L - chr2L_5277181_5277957 chr2L_5277181_5277933 chr2L_5276936_5277180;chr2L_5277958_5278033 92.00 90.32 100.00 89.29 NA NA 95.12 95.56 91.49 NA NA 91.84 NA 95.83 77.78 91.67 92.00 NA NA 93.18 NA 95.12 95.24 81.48 NA 90.48 96.55 86.36 84.62 93.10 100.00 NA 92.00 93.94 80.77 95.24 89.47 95.65 91.67 90.48 95.45 93.18 NA 90.00 NA 89.29 90.62 100.00 93.62 90.48 93.33 92.00 NA NA 90.00 NA NA NA K intron_retention CG17896 chrX - chrX_386662_387420 chrX_386661_386662;chrX_387420_387421 chrX_384820_386661;chrX_387421_387517 2.86 3.23 0.00 10.00 0.00 0.00 3.77 0.87 1.27 5.00 3.03 2.54 3.70 1.69 1.98 3.92 0.00 21.21 2.70 2.44 1.92 28.57 4.58 3.12 4.65 0.00 4.10 4.88 5.26 2.86 7.81 1.82 4.08 1.09 0.00 3.85 2.84 1.89 2.94 4.43 8.11 3.05 3.03 2.17 5.26 1.79 1.69 3.03 2.86 3.28 2.61 1.67 0.00 2.11 3.66 1.57 0.00 3.45 K intron_retention CG6954 chr3R + chr3R_18504495_18504551 chr3R_18504494_18504495;chr3R_18504551_18504552 chr3R_18504288_18504494;chr3R_18504552_18504762 7.69 7.69 0.00 0.00 NA 0.00 40.00 0.00 7.41 NA NA 7.14 14.29 NA NA 6.25 NA NA 7.69 9.68 NA NA 3.45 7.14 NA NA 0.00 NA NA 5.26 33.33 NA 0.00 0.00 9.09 14.29 14.81 12.50 NA 4.35 NA 19.23 0.00 7.69 28.57 25.00 NA 0.00 8.33 NA 19.05 NA NA NA 12.50 NA NA NA K intron_retention RI_chr2L_3706792_3706842,cutlet chr2L - chr2L_3707580_3708014 chr2L_3707579_3707580;chr2L_3708014_3708015 chr2L_3707516_3707579;chr2L_3708015_3708235 0.00 NA NA 0.00 NA NA 0.00 0.00 2.86 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA 4.76 NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA K cassette Tsp97E chr3R - chr3R_22788174_22788879 chr3R_22788174_22788261;chr3R_22788803_22788879 chr3R_22788262_22788802 chr3R_22787748_22788173;chr3R_22788880_22789206 1.59 1.47 0.00 5.48 0.00 0.00 3.23 4.84 2.86 0.00 0.00 1.71 2.94 3.33 2.33 2.56 0.00 0.00 2.56 0.79 0.00 2.56 1.41 1.32 2.27 0.00 1.59 1.69 1.72 2.22 2.86 2.08 1.56 2.67 2.00 2.22 0.00 0.00 0.00 1.03 2.27 3.30 3.57 1.54 2.70 1.27 1.59 1.82 1.27 3.45 0.00 0.00 0.00 0.00 0.00 0.00 1.67 1.47 K intron_retention CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15769239_15769300 chrX_15769238_15769239;chrX_15769300_15769301 chrX_15769171_15769238;chrX_15769301_15769402 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 6.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette olf413,I_chr3L_22222523_22232266,F_chr3L_22232427_22235447 chr3L + chr3L_22222523_22232266 chr3L_22222523_22224323;chr3L_22224460_22232266 chr3L_22224324_22224459 chr3L_22222423_22222522;chr3L_22232267_22232334 94.44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA K jcn_only_AD pnt,I_chr3R_19139278_19163617,noncoding_18559,I_chr3R_19181524_19181702 chr3R - chr3R_19166250_19171119 chr3R_19166250_19171110 chr3R_19166218_19166249;chr3R_19171120_19171533 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.97 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG4165,I_chrX_5317784_5317881,I_chrX_5321743_5321838 chrX + chrX_5316160_5316612;chrX_5316313_5316612;chrX_5315965_5316612 chrX_5316300_5316612 chrX_5316613_5317050;chrX_5315939_5315964 30.43 26.09 NA 28.57 NA NA NA 33.33 30.43 NA NA 29.41 NA NA 19.05 NA NA 26.92 13.64 37.04 NA 44.12 18.18 NA NA NA 30.43 NA NA 41.67 NA NA 60.00 40.00 45.45 30.00 38.71 NA 44.44 37.04 NA 20.69 NA NA NA NA NA NA 26.83 NA 40.62 NA NA NA NA NA NA NA K cassette CG2316,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_213991,RI_chr4_210688_214450 chr4 - chr4_208796_210623 chr4_208796_209050;chr4_209150_210623 chr4_209051_209149 chr4_208696_208795;chr4_210624_210636 100.00 100.00 100.00 100.00 85.71 100.00 96.15 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA K alternative_donor CG6954,I_chr3R_18492755_18493701,I_chr3R_18492801_18502630,I_chr3R_18493099_18493701 chr3R + chr3R_18492755_18493701;chr3R_18492765_18493701;chr3R_18492801_18493701 chr3R_18492761_18493701 chr3R_18493702_18493764;chr3R_18492703_18492754 37.50 NA 25.00 NA NA NA NA 37.50 37.50 NA NA NA NA 33.33 NA 60.00 NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA 42.86 NA NA NA 50.00 NA NA NA K intron_retention rod,CG1635,I_chr3R_27416864_27416939 chr3R + chr3R_27406841_27406902 chr3R_27406840_27406841;chr3R_27406902_27406903 chr3R_27406710_27406840;chr3R_27406903_27407240 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 4.00 5.56 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 K alternative_donor I_chr3R_2586481_2589554,Ama,I_chr3R_2589223_2589559,I_chr3R_2589239_2589559,I_chr3R_2589310_2589554,I_chr3R_2589312_2589554 chr3R + chr3R_2589223_2589554 chr3R_2589239_2589554 chr3R_2589555_2589654;chr3R_2589212_2589222 83.33 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA 75.00 NA NA 66.67 NA NA 77.78 NA NA NA 77.78 83.33 100.00 87.50 NA NA NA 87.50 NA 88.89 NA NA 75.00 NA NA NA NA NA NA NA 100.00 NA K alternative_acceptor CG1737 chrX + chrX_11247633_11247689 chrX_11247633_11247680 chrX_11245724_11247632;chrX_11247690_11248794 100.00 96.55 100.00 100.00 100.00 100.00 96.00 100.00 97.96 94.44 100.00 97.73 100.00 100.00 100.00 94.12 100.00 100.00 93.33 98.63 100.00 96.15 98.08 100.00 100.00 100.00 97.06 100.00 100.00 96.15 100.00 100.00 96.77 96.77 100.00 100.00 95.92 97.06 100.00 100.00 94.44 100.00 100.00 95.65 96.67 100.00 100.00 95.00 100.00 100.00 97.44 100.00 100.00 97.22 100.00 93.33 100.00 92.31 K jcn_only_AA Sap47,I_chr3R_11761076_11761674,I_chr3R_11761436_11761674,F_chr3R_11761635_11761698,E_chr3R_11761635_11761703 chr3R + chr3R_11761307_11761561;chr3R_11761307_11761674;chr3R_11761307_11761698 chr3R_11761307_11761703 chr3R_11761299_11761306;chr3R_11761704_11761774 0.00 NA NA NA NA NA 4.35 NA 4.17 NA 0.00 NA NA NA NA NA NA NA NA 0.00 13.64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention B4,I_chr2L_13513474_13549131,I_chr2L_13547133_13549131,I_chr2L_13547162_13547692,I_chr2L_13547304_13549131 chr2L - chr2L_13547162_13549131 chr2L_13547161_13547162;chr2L_13549131_13549132 chr2L_13547062_13547161;chr2L_13549132_13549231 34.38 25.00 40.00 40.00 23.53 42.11 51.52 34.38 44.19 22.22 38.46 35.14 41.67 50.00 57.14 50.00 50.00 56.25 40.00 23.26 38.10 34.29 22.50 19.51 25.93 33.33 34.38 40.54 32.26 27.91 43.33 38.89 38.46 52.94 29.27 42.86 27.59 18.18 25.00 25.00 26.67 46.34 35.29 25.00 25.81 20.00 26.67 35.56 42.50 33.33 24.14 25.00 21.43 11.11 34.62 33.33 42.31 34.38 K cassette M(2)21AB,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_111118_112689;chr2L_110878_112689 chr2L_110878_111906,chr2L_111118_111906;chr2L_112020_112689 chr2L_111907_112019 chr2L_110778_110877;chr2L_112690_112789 81.96 84.97 78.50 76.47 77.78 83.54 65.22 84.08 79.04 79.52 90.41 83.17 78.72 83.08 81.56 78.26 80.14 85.12 85.55 87.25 91.76 73.01 81.89 84.13 84.62 81.54 80.92 62.62 69.52 80.43 83.02 84.03 76.64 83.33 84.28 80.70 77.26 81.78 74.78 79.12 86.49 83.09 82.91 78.98 70.18 91.48 85.63 82.35 85.96 87.74 80.78 80.92 89.33 82.73 81.82 81.96 90.79 93.55 K alternative_acceptor RpS18,CG8908,EI_chr2R_16151918_16151997,I_chr2R_16151918_16152036,I_chr2R_16151938_16152065,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151918_16152036 chr2R_16151918_16151997 chr2R_16151852_16151917;chr2R_16152037_16152066 99.92 99.90 99.81 100.00 99.95 100.00 100.00 99.97 99.98 99.84 99.95 99.96 99.94 99.89 99.86 99.84 99.83 100.00 99.85 99.98 99.95 99.88 99.84 99.90 99.93 99.95 99.96 99.91 99.94 99.93 99.96 99.82 99.75 99.93 99.92 99.86 99.95 99.77 99.89 99.78 99.90 99.90 100.00 99.94 99.96 99.87 99.96 99.94 99.96 99.88 99.89 99.93 99.83 99.91 99.93 99.87 99.86 99.86 N alternative_acceptor CG32594 chrX + chrX_14918988_14924618 chrX_14918988_14919783 chrX_14918583_14918987;chrX_14924619_14924880 2.01 2.22 2.35 0.73 1.33 1.16 1.50 1.82 1.78 1.92 1.43 5.26 3.12 2.78 1.02 2.01 1.32 1.20 2.06 1.97 1.27 1.30 2.44 3.95 2.38 1.47 2.25 2.50 1.45 1.18 1.68 2.27 1.11 1.95 3.08 1.61 2.50 1.37 2.99 1.75 1.35 1.75 2.60 2.35 2.17 2.04 3.28 2.17 1.79 5.45 2.17 1.56 3.45 2.56 1.72 3.57 2.56 2.13 K intron_retention S6k,I_chr3L_5800361_5803389,RI_chr3L_5801924_5803389 chr3L - chr3L_5800361_5803389 chr3L_5800360_5800361;chr3L_5803389_5803390 chr3L_5800311_5800360;chr3L_5803390_5803489 93.75 100.00 92.86 86.67 93.33 81.82 87.50 100.00 97.30 NA 93.75 96.43 91.67 93.33 95.00 93.33 92.31 100.00 100.00 90.48 92.86 78.79 76.47 100.00 93.75 90.91 95.45 96.00 100.00 100.00 97.56 93.33 97.22 92.00 92.86 76.19 93.75 NA 92.31 100.00 94.12 96.88 100.00 100.00 95.83 100.00 100.00 96.00 88.89 90.91 95.00 90.91 NA NA 94.74 NA 87.50 92.31 K mutually_exclusive lqf,I_chr3L_7522287_7522807 chr3L + chr3L_7528745_7529810,chr3L_7529870_7530075 chr3L_7528745_7529103,chr3L_7529536_7530075 chr3L_7529811_7529869 chr3L_7529104_7529535 chr3L_7528643_7528744;chr3L_7530076_7530479 33.33 36.36 38.46 35.29 16.67 16.67 56.25 33.33 40.74 21.43 66.67 54.84 20.00 37.50 28.57 41.18 41.18 21.43 22.22 39.62 56.25 12.50 26.09 21.05 25.00 40.00 27.78 60.00 66.67 33.33 25.81 25.00 37.50 42.11 33.33 52.94 35.29 33.33 15.79 81.82 20.00 30.43 30.00 38.10 37.50 28.57 27.78 50.00 38.10 20.00 25.00 22.22 54.55 27.27 29.41 30.77 46.15 50.00 K jcn_only_AD None chrU - chrU_5771599_5771833;chrU_5771599_5771684 chrU_5771599_5771693 29.38 29.38 25.46 30.15 30.47 26.77 28.73 35.29 28.04 31.39 29.21 30.30 21.30 31.34 23.84 30.08 27.80 28.82 24.71 27.75 32.23 31.45 22.68 30.66 30.53 30.26 30.60 31.16 33.27 32.89 27.23 34.69 36.25 28.37 30.05 38.75 26.96 30.29 27.50 29.14 29.53 27.90 28.63 30.71 28.31 29.59 30.58 28.30 28.92 26.94 28.62 31.29 30.62 31.51 29.36 29.07 28.30 28.88 K jcn_only_AA Trf4-1,I_chrX_8459198_8459266 chrX + chrX_8459198_8459409 chrX_8459198_8459266 chrX_8459098_8459197;chrX_8459410_8460089 0.00 1.19 0.00 0.00 1.37 0.00 3.23 0.00 0.00 1.85 0.00 1.22 1.89 1.79 0.00 0.00 0.00 0.00 1.49 1.34 0.00 0.81 0.00 1.43 0.00 2.13 0.00 0.00 3.12 1.75 0.00 0.00 7.32 0.83 0.00 0.00 0.00 0.00 2.42 1.72 3.45 0.68 0.00 7.46 0.00 0.00 1.82 0.00 0.00 2.22 0.00 2.56 0.00 1.52 0.00 1.59 5.26 0.00 K alternative_acceptor Pink1,F_chrX_6578108_6578160,F_chrX_6578108_6578165,I_chrX_6578115_6578251 chrX + chrX_6578495_6578556 chrX_6578495_6578550 chrX_6578252_6578494;chrX_6578557_6578754 66.67 68.75 70.00 68.00 76.47 53.85 77.78 58.33 71.19 71.43 64.52 67.80 65.38 75.00 66.67 67.35 70.00 58.06 63.64 63.41 68.18 66.67 78.95 57.14 71.43 65.62 91.67 NA 63.64 82.14 63.64 61.76 65.93 77.27 68.18 52.00 58.33 42.86 54.17 59.52 64.86 66.67 74.07 72.73 75.00 70.73 53.85 71.74 59.62 66.67 52.63 63.64 60.00 NA 66.67 69.23 70.00 67.21 K intron_retention kermit,I_chr2R_4035901_4043493 chr2R - chr2R_4035901_4043559 chr2R_4035900_4035901;chr2R_4043559_4043560 chr2R_4035801_4035900;chr2R_4043560_4043593 24.57 25.93 28.95 40.00 35.00 34.62 19.51 18.52 38.00 16.67 NA 27.91 21.05 33.33 45.16 17.95 40.91 25.00 22.22 21.54 28.57 41.67 23.40 23.08 28.57 33.33 38.24 66.67 36.11 19.35 29.03 27.27 28.57 42.50 24.14 35.29 28.26 16.67 25.81 20.00 21.43 22.64 33.33 17.65 24.14 3.64 11.11 25.00 20.37 13.79 23.08 9.09 16.00 8.33 39.39 6.67 12.12 8.77 K multi_cassette ssp4,I_chr2R_13409412_13410357,RI_chr2R_13409412_13411004,I_chr2R_13409412_13411328,I_chr2R_13409412_13411588,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13409406_13411328 chr2R_13409406_13410357;chr2R_13410466_13411004;chr2R_13411077_13411328 chr2R_13410358_13410465;chr2R_13411005_13411076 chr2R_13409337_13409405;chr2R_13411329_13411403 4.88 NA NA 3.85 NA NA NA 4.17 4.35 NA NA 4.35 NA 0.00 7.69 6.67 0.00 15.38 7.69 5.41 NA 18.18 5.00 0.00 NA NA 9.52 NA NA NA NA NA NA 5.26 5.56 0.00 0.00 NA 0.00 0.00 NA 8.33 0.00 NA NA 4.55 NA NA 5.00 6.25 4.76 7.69 NA NA 6.67 NA 0.00 NA K multi_cassette Nipped-B,I_chr2R_580301_580515,I_chr2R_580453_580515,I_chr2R_580989_582555,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_580301_582623 chr2R_580301_580367;chr2R_580456_580515;chr2R_580674_580752;chr2R_580989_582623 chr2R_580368_580455;chr2R_580516_580673;chr2R_580753_580988 chr2R_580236_580300;chr2R_582624_582655 100.00 100.00 100.00 96.97 92.86 94.12 98.48 98.08 98.41 100.00 100.00 97.96 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 96.67 100.00 88.24 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 97.06 93.75 94.12 90.91 100.00 100.00 100.00 100.00 K jcn_only_AD Dscam,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3249373_3250528;chr2R_3249373_3251682;chr2R_3249373_3253447;chr2R_3249373_3252522;chr2R_3249373_3252236;chr2R_3249373_3252816;chr2R_3249373_3253970;chr2R_3249373_3250836;chr2R_3249373_3251960;chr2R_3249373_3251099 chr2R_3249373_3254309 chr2R_3249273_3249372 14.63 14.29 12.77 9.38 12.00 16.13 22.50 12.07 14.63 0.00 NA 8.82 13.51 11.76 26.83 16.98 11.11 29.03 25.71 8.89 12.00 15.00 12.86 8.33 14.89 12.00 2.70 6.45 26.79 11.76 5.88 17.86 16.25 14.55 16.13 4.76 18.18 26.32 14.63 24.72 17.24 18.46 18.75 22.41 45.45 10.53 29.17 9.30 13.43 NA 24.44 5.00 16.13 NA 11.54 25.00 NA 21.74 K jcn_only_AA RI_chrX_8468338_8469380,I_chrX_8468338_8477573,CG12065,CE_chrX_8469528_8477573 chrX + chrX_8468441_8469380;chrX_8468441_8469383 chrX_8468441_8469386 chrX_8468351_8468440;chrX_8469387_8469480 4.89 5.74 10.19 1.69 5.04 6.60 12.68 4.89 6.27 9.28 0.91 5.77 11.22 5.56 4.72 4.05 2.34 3.26 4.32 2.16 5.31 3.70 6.55 5.24 3.30 4.39 4.26 6.17 5.41 5.49 5.81 5.75 7.34 6.19 5.04 3.88 3.62 2.24 3.94 5.77 3.33 5.91 1.71 3.66 4.76 2.76 3.47 3.17 5.05 4.67 5.08 4.91 4.76 3.75 5.44 3.55 4.35 5.97 K jcn_only_AA CG1637,I_chrX_10767112_10767168,I_chrX_10767807_10771447,I_chrX_10769621_10769824 chrX - chrX_10767742_10771447;chrX_10770030_10771447;chrX_10770033_10771447 chrX_10766073_10771447 chrX_10771448_10771547 79.43 86.89 80.00 93.33 78.12 78.57 88.96 85.93 81.88 60.27 72.57 80.35 93.75 78.52 77.02 77.98 79.49 72.03 81.88 80.69 66.96 73.79 77.27 73.78 87.40 93.29 77.89 83.65 78.86 81.20 78.29 70.37 79.13 80.35 84.62 76.07 67.31 77.46 73.44 65.22 75.47 82.93 83.02 79.43 72.46 72.92 83.41 66.36 80.70 85.71 81.78 82.14 84.00 75.72 84.42 79.82 86.91 77.67 N intron_retention I_chr3L_9481026_9484943,noncoding_11665 chr3L + chr3L_9481349_9481415 chr3L_9481348_9481349;chr3L_9481415_9481416 chr3L_9481282_9481348;chr3L_9481416_9481523 10.53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor mus210,RI_chr2R_11200323_11202068,RI_chr2R_11200323_11202128,chr2R_11200326_11200570.0,chr2R_11200670_11201286.0 chr2R + chr2R_11200323_11202122 chr2R_11200323_11202068 chr2R_11200223_11200322;chr2R_11202123_11202168 3.17 1.39 0.00 3.85 2.04 1.69 7.14 2.88 2.97 3.03 0.00 1.57 0.00 1.96 2.00 3.03 2.33 3.45 0.00 0.88 4.17 10.24 2.17 3.54 7.59 7.25 2.31 5.88 9.38 4.12 5.26 2.86 4.32 1.00 5.49 20.51 5.56 4.35 4.23 4.81 8.93 3.45 2.00 1.22 0.00 3.28 4.00 5.56 3.36 6.38 3.51 0.00 2.33 5.13 1.00 3.17 0.00 0.00 K jcn_only_AA CG14614,RI_chrX_21856027_21856279,REI_chrX_21856047_21856229,RI_chrX_21856896_21857109 chrX - chrX_21856027_21856229 chrX_21856047_21856229 chrX_21856230_21856329;chrX_21855947_21856026 0.30 0.00 0.58 1.04 2.04 1.35 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 1.46 0.65 0.30 0.00 0.00 0.59 1.59 2.65 2.08 0.56 1.87 0.87 1.42 0.54 1.37 1.05 0.46 0.00 0.66 2.13 0.91 0.64 0.42 2.04 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 1.75 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA PPP4R2r chrX + chrX_10373003_10373522 chrX_10373003_10373505 chrX_10372866_10373002;chrX_10373523_10373750 93.78 NA 100.00 97.73 NA 85.71 86.11 96.10 96.08 NA NA 93.02 87.50 100.00 NA 93.06 87.50 NA 93.55 86.00 100.00 95.45 100.00 NA NA 92.31 NA NA NA NA 96.77 NA 100.00 94.00 91.30 NA 90.48 NA NA 90.48 NA 89.36 96.15 NA NA 89.29 NA 80.95 96.92 NA 96.30 NA NA NA 94.29 NA NA NA K intron_retention CG17255,I_chrX_10366177_10366615,RI_chrX_10366177_10367270 chrX - chrX_10366177_10367270 chrX_10366176_10366177;chrX_10367270_10367271 chrX_10366077_10366176;chrX_10367271_10367332 25.00 NA NA 33.33 NA NA 31.25 36.84 17.86 NA NA 28.00 NA 30.77 NA 25.00 NA NA 23.08 26.67 NA NA 23.53 25.00 NA NA 29.41 NA NA 20.00 NA NA NA 22.73 NA NA 20.00 NA NA 27.27 NA 12.00 NA NA NA NA NA NA 23.81 NA 26.32 NA NA NA NA NA NA NA K alternative_last_exon CG5004,noncoding_24336,E_chrX_17024712_17024996 chrX + chrX_17002092_17018935 chrX_17002092_17007672 chrX_17018936_17019050 chrX_17007673_17007841 chrX_17001775_17002091 6.90 5.56 11.76 5.00 5.26 5.88 15.38 3.23 8.77 0.00 5.56 21.88 7.69 6.25 5.00 13.64 5.56 16.67 5.88 55.38 0.00 4.55 4.44 6.25 15.00 NA 4.55 11.11 16.67 7.14 14.29 8.33 3.57 7.14 11.76 0.00 3.77 3.45 6.45 6.06 10.00 11.11 0.00 10.71 6.67 18.75 7.69 4.55 9.09 10.00 9.68 10.00 6.67 7.14 15.00 14.29 0.00 0.00 K alternative_acceptor Mec2,I_chrX_19082929_19083066,I_chrX_19083581_19083676 chrX + chrX_19083581_19083676 chrX_19083581_19083672 chrX_19083481_19083580;chrX_19083677_19083776 99.36 100.00 99.47 99.40 100.00 99.44 99.21 100.00 99.74 99.07 99.31 99.72 100.00 99.28 99.54 100.00 99.35 100.00 99.31 99.73 100.00 99.11 96.11 98.31 97.56 99.38 100.00 98.90 99.32 99.34 95.30 98.61 98.88 99.57 97.04 97.78 99.72 100.00 98.81 99.17 99.35 99.51 99.27 100.00 99.36 99.49 98.48 98.12 99.68 98.82 98.86 98.96 99.69 98.85 99.54 99.50 99.75 100.00 K alternative_acceptor I_chr3R_261173_261244,CG14650,RI_chr3R_265878_265942 chr3R + chr3R_265874_265948 chr3R_265874_265942 chr3R_265778_265873;chr3R_265949_266042 100.00 97.78 100.00 100.00 100.00 96.88 100.00 100.00 100.00 97.14 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 98.33 100.00 100.00 98.04 100.00 100.00 100.00 100.00 98.04 100.00 97.78 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 K intron_retention Mpcp chr3L + chr3L_14530935_14531103 chr3L_14530934_14530935;chr3L_14531103_14531104 chr3L_14530782_14530934;chr3L_14531104_14531521 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 5.26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA Sap-r,E_chr3R_26711286_26714646,I_chr3R_26712627_26713553,I_chr3R_26712627_26714606,RI_chr3R_26713323_26714382 chr3R - chr3R_26712627_26714382 chr3R_26713323_26714382 chr3R_26714383_26714461;chr3R_26712527_26712626 0.00 0.00 0.12 0.17 0.08 0.07 0.05 0.04 0.07 0.00 0.08 0.04 0.00 0.08 0.06 0.12 0.00 0.07 0.07 0.07 0.00 0.06 0.00 0.11 0.00 0.00 0.00 0.07 0.06 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.07 0.10 0.00 0.08 0.09 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG5872,RI_chr3L_20430213_20430346,RI_chr3L_20430213_20430358 chr3L + chr3L_20430213_20430353;chr3L_20430213_20430358 chr3L_20430213_20430346 chr3L_20430113_20430212;chr3L_20430359_20430446 19.05 NA NA NA NA NA NA NA 27.27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA 28.57 NA NA NA NA NA NA NA NA 19.05 NA NA NA 19.05 NA 10.26 14.29 NA NA NA NA NA NA NA NA 4.88 K alternative_acceptor CG7770,I_chr3L_19916995_19917092 chr3L + chr3L_19916995_19917092 chr3L_19916995_19917081 chr3L_19916927_19916994;chr3L_19917093_19917157 100.00 98.91 100.00 100.00 100.00 100.00 99.23 100.00 99.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.86 98.82 99.46 98.80 100.00 99.03 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.36 100.00 99.18 98.41 100.00 100.00 100.00 100.00 100.00 100.00 99.39 100.00 98.91 98.65 100.00 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.47 100.00 K jcn_only_AD CG15173,RI_chr2L_19044304_19044369 chr2L - chr2L_19043884_19043945;chr2L_19043884_19043931 chr2L_19043884_19043935 chr2L_19043535_19043883;chr2L_19043946_19044083 98.34 NA NA 95.00 NA NA NA NA NA NA NA 95.45 NA NA NA NA NA NA NA 96.43 NA NA NA 100.00 NA 100.00 NA NA NA NA 96.67 NA NA NA NA NA NA NA NA NA NA 92.59 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 100.00 NA K alternative_acceptor CG5270,I_chr3R_7253146_7253201,F_chr3R_7256294_7256363 chr3R + chr3R_7254775_7254841 chr3R_7254775_7254831 chr3R_7254647_7254774;chr3R_7254842_7255641 100.00 100.00 100.00 100.00 90.91 90.00 93.33 100.00 100.00 NA NA 95.00 NA 88.89 90.00 100.00 100.00 93.33 100.00 100.00 NA 95.45 87.50 100.00 88.89 90.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 94.44 NA 100.00 100.00 NA 100.00 100.00 90.91 95.65 NA 100.00 100.00 100.00 88.89 100.00 95.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 K intron_retention CG6401 chr2R - chr2R_13626884_13626952 chr2R_13626883_13626884;chr2R_13626952_13626953 chr2R_13626638_13626883;chr2R_13626953_13627220 0.00 0.00 0.00 0.00 0.00 0.00 9.52 13.04 0.00 0.00 12.50 0.00 NA 0.00 NA 8.33 NA 10.53 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 8.70 0.00 0.00 3.45 0.00 0.00 2.78 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA K intron_retention Ssrp,I_chr2R_19695638_19696332,RI_chr2R_19699261_19699317 chr2R - chr2R_19696256_19696332 chr2R_19696255_19696256;chr2R_19696332_19696333 chr2R_19694684_19696255;chr2R_19696333_19696432 0.00 0.00 0.62 0.86 0.00 0.00 0.78 0.00 0.59 0.00 0.00 0.00 0.00 1.44 0.56 0.00 0.85 0.61 0.00 0.27 0.69 2.76 0.35 0.00 2.48 0.00 2.28 2.33 2.52 0.00 2.48 0.00 0.28 0.00 0.00 0.52 0.00 0.00 0.00 0.00 2.27 0.63 0.00 0.00 0.00 0.00 0.54 0.92 0.60 1.08 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.58 K jcn_only_AD vig chr2L - chr2L_15067690_15067915;chr2L_15067690_15067952;chr2L_15067690_15067868;chr2L_15067690_15068029;chr2L_15067690_15067999 chr2L_15067690_15067995 chr2L_15066937_15067689;chr2L_15068030_15068031 4.35 6.25 2.53 2.08 2.24 7.27 1.57 1.91 4.57 5.00 0.69 5.38 4.55 5.93 4.20 2.50 2.73 2.88 2.91 3.48 1.32 7.55 4.32 9.88 3.70 2.48 5.00 11.83 4.55 6.94 3.52 3.17 7.22 2.05 2.86 1.30 9.40 4.35 4.35 7.87 9.46 2.58 1.75 6.04 7.69 9.52 6.58 13.25 1.85 4.44 2.97 9.41 1.92 5.88 1.69 4.35 6.90 9.43 K intron_retention I_chrX_16266436_16268958,Fur2,I_chrX_16267221_16268573,I_chrX_16267868_16268958,RI_chrX_16267905_16268958,I_chrX_16270205_16270272,I_chrX_16274795_16274867 chrX + chrX_16267221_16268958 chrX_16267220_16267221;chrX_16268958_16268959 chrX_16267215_16267220;chrX_16268959_16269058 0.00 0.00 NA 0.00 NA NA 3.85 0.00 0.00 0.00 NA 5.56 0.00 0.00 NA 2.94 0.00 NA NA 3.03 NA 5.26 0.00 0.00 NA NA 8.70 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 6.67 0.00 0.00 NA 4.88 0.00 8.70 NA 0.00 NA 0.00 NA 2.33 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 K multi_cassette CG2316,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_210055,I_chr4_209875_210628,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_211303,RI_chr4_210688_211927,I_chr4_210688_213991,I_chr4_210688_214019,I_chr4_210688_214049,RI_chr4_210688_214450 chr4 - chr4_208796_210623 chr4_208796_209050;chr4_209150_209203;chr4_209369_210623 chr4_209051_209149;chr4_209204_209368 chr4_208696_208795;chr4_210624_210636 100.00 100.00 100.00 100.00 80.00 100.00 90.91 100.00 100.00 NA 100.00 92.86 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 K jcn_only_AD MB8.chr3R.pasa.66,CG1091,I_chr3R_2910490_2910662,RI_chr3R_2910490_2910686,RI_chr3R_2911041_2911135,RI_chr3R_2946518_2946663 chr3R - chr3R_2910490_2910662;chr3R_2910490_2910646 chr3R_2910490_2910686 chr3R_2910390_2910489;chr3R_2910687_2910762 2.94 3.33 2.82 4.92 7.27 1.37 4.35 3.70 3.36 0.00 3.85 0.00 3.03 4.17 2.94 1.05 1.75 3.17 2.27 3.61 3.45 1.89 0.00 3.00 0.00 0.00 4.35 0.00 2.38 1.23 7.52 3.08 3.31 0.96 0.00 3.77 3.26 1.72 4.71 8.06 1.67 0.76 4.35 1.45 1.08 1.37 1.72 1.71 3.70 9.59 4.55 8.47 1.96 3.51 0.00 3.08 1.45 2.27 K intron_retention phr6-4 chr2L - chr2L_20645362_20645416 chr2L_20645361_20645362;chr2L_20645416_20645417 chr2L_20644664_20645361;chr2L_20645417_20645451 41.18 NA 41.67 68.75 NA 28.57 50.00 33.33 41.18 NA NA 53.33 NA NA 53.33 52.17 NA NA 54.55 33.33 NA NA NA NA NA 40.00 NA NA NA NA 37.50 NA NA 36.36 NA NA NA NA NA NA NA 37.50 60.00 NA NA NA NA NA 31.82 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG5854,RI_chr3R_19760655_19760703 chr3R + chr3R_19760655_19760750 chr3R_19760655_19760703 chr3R_19760555_19760654;chr3R_19760751_19760803 0.80 0.87 1.61 0.43 0.00 0.00 0.98 1.32 1.05 1.03 1.54 1.16 0.00 0.00 1.92 0.00 0.00 0.00 0.67 1.10 1.38 1.10 0.60 1.06 0.00 0.69 1.74 2.94 1.32 1.27 1.27 0.00 0.50 0.78 0.83 0.61 0.80 0.77 1.59 1.12 1.43 1.18 0.00 0.00 0.67 0.55 0.58 1.31 0.73 0.45 0.70 0.66 1.15 1.40 0.00 0.93 0.79 0.98 K intron_retention skap chr3R + chr3R_4766584_4766643 chr3R_4766583_4766584;chr3R_4766643_4766644 chr3R_4766421_4766583;chr3R_4766644_4766911 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CHES-1-like,I_chrX_7584030_7588818 chrX - chrX_7580832_7580901 chrX_7580835_7580901 chrX_7580902_7581780;chrX_7580616_7580831 83.33 64.71 NA 71.43 90.91 NA 83.33 90.91 76.19 75.00 100.00 83.33 75.00 80.00 88.89 NA 100.00 81.82 87.50 84.21 NA 82.05 77.78 72.22 92.86 81.82 84.21 73.33 73.33 84.62 100.00 NA 77.78 83.33 NA 94.74 77.42 77.78 86.36 90.00 NA 78.12 NA 88.24 NA 88.89 NA 78.57 85.71 NA 80.00 70.00 NA NA 60.00 100.00 90.91 NA K intron_retention CG31075 chr3R - chr3R_22812727_22812783 chr3R_22812726_22812727;chr3R_22812783_22812784 chr3R_22812155_22812726;chr3R_22812784_22812884 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.40 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD stck,I_chr3R_4184313_4184380,I_chr3R_4184660_4184730 chr3R + chr3R_4182496_4184192;chr3R_4183179_4184192 chr3R_4182818_4184192 chr3R_4184193_4184312;chr3R_4182427_4182495 62.79 NA 55.00 62.79 NA NA 75.00 77.78 86.05 NA NA 61.22 70.37 NA 82.61 80.65 NA NA 40.00 47.92 NA 36.36 50.00 75.00 NA 60.71 NA NA 39.29 NA 52.00 NA NA 82.61 NA NA 63.83 78.26 64.00 48.39 NA 81.58 NA 48.15 28.00 58.62 52.17 NA 88.46 76.32 40.74 81.48 NA 45.00 82.76 54.29 65.62 NA K alternative_donor CG1427,RI_chr3R_1427548_1427635 chr3R + chr3R_1427548_1427635 chr3R_1427585_1427635 chr3R_1427636_1427704;chr3R_1427482_1427547 100.00 100.00 100.00 91.67 100.00 100.00 100.00 91.67 96.88 100.00 100.00 100.00 93.75 91.67 90.00 100.00 93.33 92.86 92.86 100.00 92.86 92.86 95.24 95.83 100.00 93.33 100.00 87.50 100.00 100.00 85.19 100.00 94.44 95.00 91.67 92.31 100.00 100.00 95.24 100.00 100.00 96.55 100.00 100.00 96.15 96.15 100.00 86.96 96.67 100.00 94.74 92.31 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention unc-13,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_923909_923962 chr4_923908_923909;chr4_923962_923963 chr4_923452_923908;chr4_923963_924097 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 1.43 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K intron_retention CG3964,I_chr2L_3864196_3864278 chr2L + chr2L_3865918_3865977 chr2L_3865917_3865918;chr2L_3865977_3865978 chr2L_3865747_3865917;chr2L_3865978_3866986 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA N intron_retention l(1)G0196,I_chrX_21890195_21895316,I_chrX_21900456_21904601 chrX + chrX_21897231_21897326 chrX_21897230_21897231;chrX_21897326_21897327 chrX_21897164_21897230;chrX_21897327_21897813 17.65 NA NA NA NA NA 17.65 NA NA NA NA NA 14.29 NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention g,I_chrX_13628772_13629563 chrX - chrX_13623727_13623792 chrX_13623726_13623727;chrX_13623792_13623793 chrX_13623117_13623726;chrX_13623793_13624469 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pros28_1,REI_chrX_16172581_16177702 chrX + chrX_16170860_16170924 chrX_16170859_16170860;chrX_16170924_16170925 chrX_16170630_16170859;chrX_16170925_16171643 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.33 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.48 1.44 1.10 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.35 0.00 0.00 0.00 0.00 0.36 0.42 0.27 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16107242_16107411 chr3L_16107241_16107242;chr3L_16107411_16107412 chr3L_16106996_16107241;chr3L_16107412_16107820 10.99 14.86 11.39 13.25 18.52 11.59 11.96 11.43 13.51 6.19 10.91 7.97 5.33 8.47 12.20 12.16 5.26 13.64 10.00 12.77 9.86 54.81 8.96 9.52 8.82 16.92 13.21 12.16 9.00 17.71 7.46 6.90 10.99 10.78 12.35 24.27 10.94 8.43 8.59 11.70 11.36 12.07 11.67 7.14 9.52 12.63 11.48 6.32 7.94 14.52 12.30 10.53 8.77 10.91 13.41 6.94 3.51 3.25 K jcn_only_AD CG31716,I_chr2L_10397163_10398034,RI_chr2L_10397195_10398034,I_chr2L_10397648_10398034 chr2L + chr2L_10396922_10398034;chr2L_10396983_10398034 chr2L_10396850_10398034 chr2L_10398035_10398134;chr2L_10396810_10396849 0.00 2.38 0.00 0.00 0.00 0.00 1.02 0.78 0.00 NA 0.00 0.00 1.52 0.00 0.00 0.00 1.72 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 NA NA 0.00 0.00 NA 0.00 0.82 0.00 0.00 2.78 0.00 3.23 0.00 NA 0.00 1.72 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389272_2395659 chrX_2389272_2389644;chrX_2389762_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2393243;chrX_2393712_2395659 chrX_2389645_2389761;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2393244_2393711 chrX_2389172_2389271;chrX_2395660_2395759 33.33 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention I_chr3R_23749027_23749091,CG5508,E_chr3R_23755071_23758533 chr3R + chr3R_23755071_23755702 chr3R_23755070_23755071;chr3R_23755702_23755703 chr3R_23754971_23755070;chr3R_23755703_23755867 0.00 0.00 NA 0.00 0.00 0.00 15.00 0.00 1.59 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.11 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA N jcn_only_AD RpL17,I_chrX_6637182_6638207,snoRNA:Psi28S-3436b chrX - chrX_6636290_6637090 chrX_6636290_6636382 chrX_6636192_6636289;chrX_6637091_6637181 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG12582 chr3R + chr3R_23285_23458 chr3R_23285_23350 chr3R_23137_23284;chr3R_23459_23593 3.42 3.36 3.19 3.74 3.50 4.32 12.23 4.02 4.18 2.54 2.08 2.92 4.68 3.91 2.56 2.82 4.22 4.88 2.91 2.48 3.47 21.79 2.04 4.73 7.41 9.20 5.67 2.68 8.47 2.40 3.42 4.90 3.02 3.06 3.88 5.07 3.25 4.27 4.10 2.12 5.48 4.03 4.12 2.69 2.86 2.47 4.17 3.28 3.31 2.14 4.24 3.28 1.79 3.45 2.56 1.15 2.68 1.66 K intron_retention Oat chr3L - chr3L_19640655_19640710 chr3L_19640654_19640655;chr3L_19640710_19640711 chr3L_19640319_19640654;chr3L_19640711_19641525 0.00 0.00 0.00 3.85 0.00 0.00 3.23 0.00 1.94 4.44 0.00 0.00 0.00 0.00 4.23 1.69 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 8.33 5.88 0.00 0.00 0.00 0.00 0.00 0.00 3.64 0.00 0.00 0.00 0.00 0.00 0.00 2.20 7.55 2.56 0.00 0.00 2.02 0.00 0.00 2.82 1.19 0.00 1.52 0.00 6.06 0.00 0.00 2.67 0.00 2.56 K intron_retention CG33523,RI_chr3L_5920177_5921323 chr3L + chr3L_5920167_5921323 chr3L_5920166_5920167;chr3L_5921323_5921324 chr3L_5920077_5920166;chr3L_5921324_5921396 3.75 0.00 7.84 3.75 0.00 0.00 6.67 2.50 3.23 0.00 6.25 2.50 5.26 2.38 2.13 4.84 4.84 2.38 0.00 2.63 2.94 14.29 1.72 0.00 15.15 12.20 3.77 12.00 25.00 0.00 2.53 9.52 0.00 4.44 7.41 20.00 1.54 1.67 3.92 8.93 20.00 3.77 4.00 0.00 9.52 9.09 2.00 10.53 2.30 0.00 1.72 4.76 4.76 0.00 4.84 0.00 1.61 6.90 K intron_retention CG7546 chr3L + chr3L_7504543_7504610 chr3L_7504542_7504543;chr3L_7504610_7504611 chr3L_7504535_7504542;chr3L_7504611_7504728 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 1.69 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Obp18a chrX - chrX_19029762_19029825 chrX_19029772_19029825 chrX_19029826_19029937;chrX_19029113_19029761 100.00 NA NA 97.22 NA NA NA 95.83 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA 100.00 NA NA 97.56 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA Dbp80 chr3LHet + chr3LHet_2543829_2543938;chr3LHet_2543829_2543887 chr3LHet_2543829_2543917 chr3LHet_2543765_2543828;chr3LHet_2543939_2543944 3.70 3.70 NA 6.06 5.00 0.00 0.00 4.65 0.00 NA NA 2.94 9.52 0.00 4.76 2.33 4.55 7.41 3.70 NA NA NA NA NA NA NA 0.00 NA NA NA 10.34 NA NA 0.00 NA NA NA NA NA 3.85 NA 0.00 NA 0.00 NA NA 3.39 NA 4.44 NA 6.06 NA NA NA 5.56 7.41 0.00 NA K alternative_acceptor l(1)G0196,I_chrX_21900456_21904601 chrX + chrX_21898150_21898203;chrX_21898150_21898215 chrX_21898150_21898212 chrX_21897878_21898149;chrX_21898216_21898384 21.21 13.79 25.00 14.63 20.00 23.08 20.59 23.08 21.82 20.00 20.00 28.89 27.27 25.00 19.51 21.21 28.00 12.00 18.18 21.05 11.76 28.57 25.00 25.00 25.00 21.74 16.67 7.69 22.22 15.00 26.19 16.67 11.11 24.39 15.79 23.53 21.62 23.81 20.00 25.93 28.57 17.86 14.29 24.14 18.18 17.39 26.67 15.00 20.00 16.67 13.79 10.53 33.33 21.43 28.57 23.08 22.22 16.67 K alternative_donor LanB1,RI_chr2L_7820401_7820448,RI_chr2L_7820405_7820461 chr2L + chr2L_7820401_7820461 chr2L_7820405_7820461 chr2L_7820462_7820548;chr2L_7820305_7820400 0.95 0.58 1.76 1.26 0.82 1.00 1.02 0.98 0.76 0.88 0.54 0.79 0.94 0.84 1.44 0.97 0.77 0.92 0.86 1.10 0.78 0.95 1.43 1.37 0.61 2.54 1.55 0.68 3.03 0.56 1.04 0.97 0.65 0.73 0.64 0.86 1.12 1.03 0.69 0.99 1.64 1.31 0.99 0.91 1.10 0.79 1.29 0.63 1.05 1.28 1.09 0.97 0.98 0.86 0.86 0.72 0.88 0.94 K intron_retention CG17737,I_chr3L_3223527_3224313,I_chr3L_3223943_3224313 chr3L + chr3L_3223415_3223462 chr3L_3223414_3223415;chr3L_3223462_3223463 chr3L_3223400_3223414;chr3L_3223463_3223526 100.00 100.00 99.46 100.00 100.00 99.22 99.63 100.00 99.59 100.00 99.09 100.00 99.47 100.00 100.00 100.00 100.00 99.22 100.00 99.15 100.00 100.00 100.00 100.00 100.00 99.47 99.17 97.67 100.00 100.00 99.49 100.00 97.06 99.76 100.00 100.00 100.00 97.83 100.00 98.53 100.00 100.00 99.48 100.00 100.00 98.59 98.78 100.00 100.00 100.00 98.75 100.00 100.00 100.00 100.00 100.00 99.51 98.78 N jcn_only_AD RpS27A chr2L + chr2L_10410169_10410240;chr2L_10410157_10410240 chr2L_10410052_10410240 chr2L_10410241_10410467;chr2L_10409711_10410051 100.00 100.00 100.00 100.00 100.00 100.00 99.90 100.00 99.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.82 100.00 100.00 100.00 99.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.91 99.92 100.00 100.00 99.93 99.92 100.00 99.88 99.72 100.00 K intron_retention CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8182451_8183140 chr2L_8182450_8182451;chr2L_8183140_8183141 chr2L_8182351_8182450;chr2L_8183141_8183177 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 6.25 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 4.55 0.00 0.00 0.00 3.39 1.12 0.00 0.00 0.00 NA 0.00 2.27 0.00 0.00 0.00 K intron_retention CG7492 chr3L - chr3L_7646501_7646560 chr3L_7646500_7646501;chr3L_7646560_7646561 chr3L_7644966_7646500;chr3L_7646561_7647199 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.41 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 1.54 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Patj,CG12022 chr3L + chr3L_1798924_1799009 chr3L_1798924_1798981 chr3L_1798831_1798923;chr3L_1799010_1800699 55.00 NA NA NA NA NA NA NA 55.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.91 NA 55.00 59.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD sar1,I_chr3R_18184656_18185246,I_chr3R_18185015_18185246,I_chr3R_18185148_18185246 chr3R + chr3R_18184351_18185246;chr3R_18185148_18185246;chr3R_18185015_18185246 chr3R_18184656_18185246 chr3R_18185247_18185346;chr3R_18184285_18184350 0.00 0.00 0.00 0.19 0.00 0.56 0.21 0.00 0.29 0.54 0.00 0.00 0.00 0.00 0.88 0.24 0.00 0.00 0.54 0.28 0.00 0.60 0.00 0.20 0.82 0.63 0.24 0.00 0.38 0.00 0.49 0.00 0.00 0.00 0.27 0.00 0.00 0.25 0.33 0.36 0.00 0.00 0.00 0.64 0.45 0.17 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 K alternative_donor CG9795,EI_chr3R_145575_147566,RI_chr3R_145613_145675 chr3R + chr3R_145579_147566 chr3R_145613_147566 chr3R_147567_147666;chr3R_145513_145578 95.00 94.87 93.18 88.89 91.30 97.67 92.59 92.31 94.74 92.86 97.62 95.89 91.49 91.18 96.43 92.00 96.30 96.30 91.30 95.12 98.08 88.89 89.83 92.45 95.00 92.68 86.44 95.00 96.55 95.83 98.00 96.88 85.71 96.43 97.06 96.55 96.55 91.67 90.00 93.22 100.00 92.59 94.12 95.00 89.19 97.96 93.75 95.45 91.67 91.30 88.89 97.06 97.37 97.83 95.83 97.44 100.00 96.67 K jcn_only_AA myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_716153_716613;chr4_716066_716613 chr4_715043_716613 chr4_716614_716661 58.33 NA NA NA NA NA NA NA 58.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N intron_retention CG13384 chr2L + chr2L_8386090_8386216 chr2L_8386089_8386090;chr2L_8386216_8386217 chr2L_8386217_8386384 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.16 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor lig,CI_chr2R_3962006_3962916,I_chr2R_3962357_3962977,RI_chr2R_3962875_3962977 chr2R + chr2R_3961910_3962980 chr2R_3961910_3962977 chr2R_3961906_3961909;chr2R_3962981_3963016 95.45 NA NA NA NA NA NA NA 90.91 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N intron_retention unc-13,I_chr4_897821_902468,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_897821_903242 chr4_897820_897821;chr4_903242_903243 chr4_897721_897820;chr4_903243_903342 100.00 100.00 100.00 100.00 100.00 100.00 76.79 100.00 76.19 NA NA 78.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 68.42 100.00 57.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 67.86 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 73.08 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 N jcn_only_AD CG9339,RE_chr2L_20903555_20916904,I_chr2L_20903560_20918638,I_chr2L_20922613_20922685 chr2L - chr2L_20917121_20918798;chr2L_20917121_20918093 chr2L_20917121_20918638 chr2L_20916905_20917120;chr2L_20918799_20918888 12.90 NA NA 23.81 NA NA NA NA 15.56 NA NA 10.71 NA NA NA 12.90 NA NA 21.74 8.16 NA NA NA NA NA NA NA NA NA 11.54 NA NA NA NA NA NA NA NA NA 19.05 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.55 K alternative_donor CG7231 chr2L + chr2L_7985434_7985552;chr2L_7985494_7985552 chr2L_7985442_7985552 chr2L_7985553_7985768;chr2L_7985425_7985433 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA 14.29 NA K alternative_acceptor CG8334,I_chr3L_19870731_19870822 chr3L + chr3L_19872580_19872644 chr3L_19872580_19872635 chr3L_19871933_19872579;chr3L_19872645_19872802 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 97.83 100.00 100.00 100.00 92.31 100.00 95.65 100.00 94.74 95.65 100.00 97.78 100.00 95.00 100.00 100.00 96.30 100.00 100.00 100.00 94.74 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 97.37 100.00 91.67 100.00 94.44 100.00 92.31 100.00 100.00 94.12 100.00 93.33 97.30 100.00 100.00 94.74 100.00 100.00 100.00 100.00 N cassette shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9791078_9791208 chr2R - chr2R_9805416_9812814 chr2R_9805416_9809051;chr2R_9809679_9812814 chr2R_9809052_9809678 chr2R_9805354_9805415;chr2R_9812815_9812985 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG6650,I_chr3L_14026788_14026844 chr3L + chr3L_14026784_14026844 chr3L_14026788_14026844 chr3L_14026845_14026944;chr3L_14026688_14026783 0.00 0.00 0.00 0.57 0.00 0.00 0.84 0.00 0.75 1.96 0.00 0.51 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.40 1.52 1.05 0.88 1.00 0.00 0.00 0.00 0.00 0.71 2.94 0.00 0.00 0.00 0.00 0.69 0.00 K jcn_only_AA CG9776 chr3R - chr3R_158200_158713 chr3R_158583_158713 chr3R_158714_158881;chr3R_158012_158199 12.70 16.67 5.36 2.30 8.89 4.76 15.91 7.69 6.82 NA 5.13 5.77 4.55 16.67 12.90 32.35 2.63 6.67 17.86 9.68 5.41 17.65 6.87 19.67 9.09 7.02 11.86 2.70 16.00 19.64 34.67 13.33 20.27 14.08 11.32 20.63 14.10 11.90 15.15 27.42 7.50 3.81 15.38 19.15 25.00 18.60 15.91 16.00 13.33 11.11 10.71 19.05 4.00 28.21 10.42 13.33 12.50 3.92 K intron_retention hts,I_chr2R_15286599_15294119,I_chr2R_15311185_15312327,I_chr2R_15311303_15312026 chr2R - chr2R_15286311_15286530 chr2R_15286310_15286311;chr2R_15286530_15286531 chr2R_15285419_15286310;chr2R_15286531_15286598 0.00 2.78 2.35 1.12 0.00 0.00 0.00 1.20 1.12 0.00 0.00 1.06 3.70 2.90 2.35 2.27 0.00 1.47 0.00 2.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.79 2.00 0.00 0.00 0.00 0.00 0.00 0.00 2.66 0.00 0.00 1.75 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG34133,F_chr3R_25696884_25696960 chr3R + chr3R_25696872_25696960 chr3R_25696871_25696872;chr3R_25696960_25696961 chr3R_25696784_25696871;chr3R_25696961_25697060 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.00 6.12 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 2.00 NA 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 NA NA K alternative_last_exon how chr3R + chr3R_17897764_17900173,chr3R_17897764_17900170 chr3R_17897764_17898653 chr3R_17900174_17900666 chr3R_17898654_17899524 chr3R_17897461_17897763 3.23 2.22 5.13 6.67 2.94 2.56 7.46 7.32 5.56 3.57 7.14 4.60 12.82 2.33 2.44 9.72 2.44 2.63 3.92 4.23 6.67 1.82 3.23 6.12 6.06 2.70 4.00 0.00 8.33 2.50 4.92 5.56 4.00 3.90 2.86 2.50 1.96 0.00 2.50 5.80 4.55 3.37 2.44 1.61 4.76 5.56 2.94 2.13 4.94 2.33 1.89 2.86 0.00 0.00 3.77 0.00 2.70 2.78 K alternative_acceptor Droj2,RI_chr3R_9207981_9208471,RI_chr3R_9208529_9209185 chr3R + chr3R_9207867_9207925 chr3R_9207867_9207913 chr3R_9207840_9207866;chr3R_9207926_9207980 98.63 98.67 97.70 97.92 98.08 97.10 98.98 97.71 98.32 100.00 98.78 99.40 98.21 98.92 98.08 97.69 98.20 98.84 96.64 98.47 100.00 97.20 100.00 97.98 98.63 98.70 100.00 98.77 99.21 100.00 100.00 97.18 100.00 96.32 96.92 100.00 96.88 98.33 98.99 99.51 100.00 96.60 95.79 99.06 99.32 99.26 98.89 99.38 97.45 96.83 100.00 95.65 98.39 100.00 96.83 98.63 98.05 99.55 K alternative_donor gb,I_chr3R_22936370_22936994 chr3R - chr3R_22936370_22936994 chr3R_22936370_22936992 chr3R_22936270_22936369;chr3R_22936995_22937094 100.00 100.00 96.77 98.00 100.00 100.00 96.77 100.00 98.75 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 95.65 100.00 100.00 97.06 100.00 98.31 96.00 98.44 100.00 100.00 100.00 100.00 96.00 100.00 98.15 95.45 100.00 96.97 100.00 100.00 100.00 95.83 100.00 97.78 K intron_retention CG6805 chr2R + chr2R_12894564_12894770 chr2R_12894563_12894564;chr2R_12894770_12894771 chr2R_12894294_12894563;chr2R_12894771_12895109 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 98.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 95.45 100.00 100.00 100.00 94.74 100.00 100.00 98.28 100.00 96.67 100.00 K cassette srp,I_chr3R_11825782_11827473,I_chr3R_11826508_11826910 chr3R + chr3R_11826508_11827473;chr3R_11825782_11827473 chr3R_11825782_11826910,chr3R_11826508_11826910;chr3R_11827129_11827473 chr3R_11826911_11827128 chr3R_11825682_11825781;chr3R_11827474_11827573 75.64 81.48 74.47 64.12 73.68 71.76 64.89 67.65 71.78 81.37 83.12 76.65 73.61 78.87 76.60 67.44 82.46 75.64 66.67 78.47 84.62 59.20 82.33 82.57 84.06 76.39 77.22 76.32 60.00 69.39 80.60 68.60 72.38 75.52 74.83 72.25 79.49 84.31 86.34 69.88 73.64 76.60 80.95 69.75 71.51 71.60 78.52 66.96 73.98 77.65 80.56 73.27 78.29 82.81 74.47 81.56 75.86 62.96 K cassette I_chr2R_2754447_2755071,Spn4,CG9454 chr2R - chr2R_2764032_2764725 chr2R_2764032_2764100;chr2R_2764239_2764725 chr2R_2764101_2764238 chr2R_2763778_2764031;chr2R_2764726_2764867 83.33 88.24 78.57 68.00 85.71 83.33 66.67 92.31 88.57 91.67 70.00 81.82 82.35 76.19 84.21 93.75 93.75 87.50 88.24 86.67 88.89 88.89 65.00 80.00 72.73 88.89 92.00 91.67 71.43 90.91 89.47 68.75 80.95 74.07 81.25 40.00 94.12 90.91 76.19 86.67 84.62 86.21 81.25 94.12 82.61 80.65 62.50 73.33 83.87 81.25 88.89 81.25 80.00 83.33 81.82 93.33 75.00 76.47 K intron_retention tefu,I_chr3R_11060517_11060585 chr3R - chr3R_11063925_11063978 chr3R_11063924_11063925;chr3R_11063978_11063979 chr3R_11063792_11063924;chr3R_11063979_11064079 5.88 0.00 0.00 0.00 0.00 12.50 15.38 8.57 5.13 NA NA 6.06 5.56 5.88 NA 7.14 14.29 0.00 6.25 17.24 NA NA 4.17 0.00 NA 50.00 NA NA NA NA 20.00 NA NA 0.00 33.33 12.50 6.25 NA NA 3.85 NA 0.00 NA 0.00 NA NA NA NA 6.67 NA 5.26 10.53 NA NA 0.00 NA NA NA K intron_retention l(1)G0156 chrX - chrX_19414861_19415705 chrX_19414860_19414861;chrX_19415705_19415706 chrX_19414693_19414860;chrX_19415706_19415867 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.38 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 2.00 1.27 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.82 0.00 0.00 2.22 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.75 K intron_retention Gpo-1,I_chr2R_11747621_11747699,EI_chr2R_11747445_11747699,I_chr2R_11749758_11750187,I_chr2R_11756325_11756380 chr2R - chr2R_11747625_11747699 chr2R_11747624_11747625;chr2R_11747699_11747700 chr2R_11747512_11747624;chr2R_11747700_11747768 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.65 2.33 2.20 0.00 0.00 0.00 0.00 0.00 0.00 2.15 0.00 2.50 1.24 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.83 1.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 1.45 2.13 K intron_retention CG12788,e(y)3 chrX - chrX_19512221_19512282 chrX_19512220_19512221;chrX_19512282_19512283 chrX_19510696_19512220;chrX_19512283_19512327 4.04 0.00 3.85 18.52 0.00 5.26 6.90 7.69 0.00 0.00 NA 13.33 NA 8.33 0.00 3.57 6.25 10.71 4.00 5.77 0.00 43.75 5.00 5.56 0.00 31.58 11.54 0.00 32.00 0.00 5.71 3.45 7.69 0.00 0.00 7.41 0.00 6.25 0.00 5.48 18.75 4.08 NA 0.00 0.00 4.65 0.00 8.33 13.04 0.00 2.56 0.00 4.88 11.11 0.00 0.00 0.00 2.78 K intron_retention CG18445,I_chr2R_5927355_5927472,CG34220 chr2R - chr2R_5930872_5930927 chr2R_5930871_5930872;chr2R_5930927_5930928 chr2R_5930529_5930871;chr2R_5930928_5930996 38.92 NA NA NA NA NA 63.64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 38.71 NA NA NA NA NA 39.13 NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention PMCA,E_chr4_350055_363541,I_chr4_350959_363547,I_chr4_352629_354970,I_chr4_352629_358161,RI_chr4_355160_363547,I_chr4_371836_372509,I_chr4_373671_374568,I_chr4_376108_379519 chr4 - chr4_352629_363547 chr4_352628_352629;chr4_363547_363548 chr4_352529_352628;chr4_363548_363641 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.71 2.05 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.93 0.55 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 K alternative_last_exon sick,RI_chr2L_19935528_19945168 chr2L + chr2L_19929355_19954552 chr2L_19929355_19950406 chr2L_19954553_19956399 chr2L_19950407_19950600 chr2L_19929220_19929354 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 4.76 K alternative_acceptor CG4133 chr2L + chr2L_456898_456972 chr2L_456898_456954 chr2L_456797_456897;chr2L_456973_457338 76.32 73.33 72.73 75.00 63.64 61.54 76.47 80.95 79.49 76.47 100.00 78.57 87.50 NA 75.00 87.50 85.71 73.33 75.00 80.00 NA 90.24 76.32 81.58 92.31 88.89 84.62 78.95 88.24 71.43 60.00 81.25 70.59 82.61 93.75 92.86 76.92 73.68 71.74 82.50 71.43 70.73 53.85 60.00 51.61 73.33 69.23 76.47 72.22 76.32 71.88 81.25 68.97 82.76 91.67 61.29 75.86 60.00 K intron_retention CG4133 chr2L + chr2L_457563_457627 chr2L_457562_457563;chr2L_457627_457628 chr2L_457400_457562;chr2L_457628_458727 1.32 0.00 3.77 5.00 0.00 0.00 1.47 2.94 3.74 2.00 2.70 0.00 2.94 0.00 1.49 5.71 3.03 0.00 0.00 0.76 0.00 1.80 3.88 2.47 0.00 0.00 8.89 10.17 0.00 3.03 1.32 1.09 1.06 3.12 0.00 3.26 2.00 0.00 3.53 1.28 1.08 3.19 0.00 0.00 3.85 1.52 4.05 0.00 2.91 0.00 0.00 0.00 0.00 0.00 1.54 2.38 0.00 1.26 K alternative_donor eIF5,noncoding_24049,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15885416_15885611;chrX_15885416_15885925;chrX_15885416_15885854 chrX_15885416_15885783 chrX_15885316_15885415;chrX_15885926_15885954 0.00 0.00 0.00 3.57 NA 0.00 0.00 0.00 9.09 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 4.55 0.00 0.00 NA 0.00 NA 0.00 2.38 0.00 0.00 NA NA NA 0.00 NA 16.67 0.00 K intron_retention RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522949_523360 chrX_522948_522949;chrX_523360_523361 chrX_522849_522948;chrX_523361_523436 48.48 NA NA 80.00 NA NA 18.18 57.14 57.14 NA NA 73.33 47.06 60.00 NA 50.00 64.29 41.67 46.15 48.48 NA 38.46 50.00 45.45 33.33 18.03 66.67 NA 47.06 28.57 45.45 40.00 41.67 63.16 60.00 NA 37.50 NA NA 50.00 28.21 57.14 NA NA 35.71 45.00 NA 53.85 58.82 NA 70.00 NA 76.92 NA NA NA 47.06 52.00 K intron_retention crm,I_chrX_2635555_2635621,I_chrX_2636831_2636971 chrX - chrX_2629802_2629869 chrX_2629801_2629802;chrX_2629869_2629870 chrX_2629429_2629801;chrX_2629870_2631446 1.64 1.82 0.00 3.45 5.13 0.00 2.56 0.00 3.23 0.00 0.00 2.78 6.45 0.00 0.00 9.68 8.57 0.00 5.00 4.26 0.00 2.48 4.26 0.00 0.00 0.00 7.46 7.27 3.19 1.30 0.00 1.54 0.00 2.74 3.45 2.90 0.85 2.50 2.27 0.72 0.00 2.35 0.00 1.64 1.09 0.99 0.00 0.00 1.14 4.21 4.29 0.00 3.28 5.41 2.13 0.00 0.00 1.92 K intron_retention I_chr2R_13460029_13460240,Dcr-2,I_chr2R_13466001_13466072 chr2R - chr2R_13466858_13466920 chr2R_13466857_13466858;chr2R_13466920_13466921 chr2R_13466300_13466857;chr2R_13466921_13467617 2.00 0.00 2.00 17.86 5.00 5.66 2.00 0.00 4.20 0.00 0.00 4.59 3.51 3.64 6.06 4.60 1.59 2.27 3.85 1.14 0.00 9.09 2.78 5.77 5.00 6.67 1.37 0.00 19.05 6.67 8.54 NA 0.00 4.24 4.55 0.00 0.00 0.00 3.57 4.44 NA 1.90 1.89 0.00 NA 0.00 0.00 NA 0.00 0.00 5.00 0.00 NA NA 0.00 0.00 0.00 NA K cassette Ect4,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8098397_8101385 chr3L_8098397_8098539;chr3L_8098758_8101385 chr3L_8098540_8098757 chr3L_8098297_8098396;chr3L_8101386_8101485 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.25 99.39 98.81 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.55 99.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.20 99.00 100.00 100.00 100.00 K jcn_only_AD CG32625,RI_chrX_13650549_13650612 chrX - chrX_13650549_13650616 chrX_13650549_13650612 chrX_13650449_13650548;chrX_13650617_13650712 0.00 0.00 2.44 0.00 9.52 4.17 0.00 0.00 1.52 0.00 3.12 0.00 4.17 8.70 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 NA 0.00 2.26 2.27 2.13 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 3.39 NA 2.13 NA 1.96 2.38 1.56 3.57 NA 1.82 3.65 1.56 0.00 0.00 0.00 4.35 1.69 0.00 0.00 K jcn_only_AD G-salpha60A chr2R + chr2R_19830338_19831752;chr2R_19830349_19831752 chr2R_19830125_19831752 chr2R_19831753_19832263;chr2R_19830091_19830124 90.62 66.67 94.74 95.06 89.47 87.50 92.68 94.92 95.20 NA 86.67 89.86 93.94 100.00 97.96 91.78 94.64 84.00 88.89 93.58 89.47 NA 94.12 89.47 NA 88.24 69.23 NA 66.67 NA 92.68 NA NA 93.33 NA NA 96.51 87.50 86.49 65.71 NA 93.98 90.62 83.78 NA 72.73 91.18 NA 92.21 95.45 91.67 83.33 85.00 NA 86.79 80.00 95.74 NA K alternative_donor mts,RI_chr2L_7828669_7830461,RI_chr2L_7828959_7830461 chr2L + chr2L_7828154_7830461 chr2L_7828669_7830461 chr2L_7830462_7830561;chr2L_7827683_7828153 0.57 0.76 0.30 0.38 0.43 0.74 0.46 0.57 0.44 0.94 0.45 0.72 0.39 0.37 0.32 0.45 0.35 0.39 0.29 0.69 0.40 1.85 0.59 0.75 0.96 0.29 0.84 4.26 3.12 1.10 0.66 0.63 0.53 0.56 0.46 1.08 0.69 0.51 0.57 1.02 0.70 0.59 0.40 0.45 0.75 0.95 0.37 1.40 0.74 0.00 0.74 0.96 0.54 0.51 0.28 0.46 0.31 1.05 K intron_retention CG9911 chrX - chrX_16190165_16190342 chrX_16190164_16190165;chrX_16190342_16190343 chrX_16190080_16190164;chrX_16190343_16190517 0.93 0.71 1.35 1.09 0.00 0.00 0.42 0.70 1.23 2.35 0.87 1.44 1.38 0.00 0.00 1.91 0.00 3.96 1.47 1.23 0.00 3.26 0.32 0.66 1.80 0.00 0.65 1.43 0.55 0.94 1.94 1.13 0.99 1.37 0.97 1.85 0.91 0.00 0.00 1.26 0.92 0.48 0.00 0.00 0.40 0.66 1.20 1.74 1.04 1.41 0.77 1.22 0.44 0.93 1.20 0.88 0.90 1.03 N jcn_only_AD CG16971,CG33229,I_chr3L_225856_225909,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_224184_224972;chr3L_224886_224972 chr3L_224779_224972 chr3L_224973_225140;chr3L_224174_224183 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.07 1.28 4.50 0.00 1.22 0.00 0.00 0.00 2.81 0.00 0.00 1.46 1.69 2.18 2.01 10.08 0.00 0.00 0.00 0.00 0.00 12.90 0.00 2.13 0.00 4.73 1.92 0.00 0.00 4.46 0.00 7.11 2.30 0.00 1.32 0.00 0.00 0.00 5.53 0.00 2.43 1.33 14.77 12.50 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention l(1)G0269,I_chrX_21192541_21192931 chrX - chrX_21193181_21194157 chrX_21193180_21193181;chrX_21194157_21194158 chrX_21192932_21193180;chrX_21194158_21194468 31.25 31.25 NA 20.59 30.77 NA 13.33 29.03 39.29 NA NA 41.94 31.25 20.00 25.00 33.33 46.15 21.05 0.00 39.39 NA 50.00 41.38 63.64 23.08 15.38 50.00 NA NA 38.46 25.00 NA NA 18.52 35.29 25.00 30.77 NA 55.56 28.57 NA 31.25 35.29 NA NA 38.46 NA NA 23.33 NA 52.38 36.36 NA NA 16.13 NA 50.00 4.76 K jcn_only_AA CG2246,I_chr3R_26421344_26425985,I_chr3R_26421349_26427017 chr3R - chr3R_26421349_26427138 chr3R_26427031_26427138 chr3R_26427139_26427178 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA 3.70 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 3.85 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 3.57 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA NA 0.00 K intron_retention Hrb27C,I_chr2L_6924401_6924743 chr2L + chr2L_6921441_6922730 chr2L_6921440_6921441;chr2L_6922730_6922731 chr2L_6921423_6921440;chr2L_6922731_6922826 42.27 NA 54.55 35.00 NA 25.00 89.06 33.33 42.86 NA NA 33.33 55.56 33.33 NA 47.83 NA 41.67 31.58 51.72 NA NA 66.67 41.67 NA 57.14 55.56 NA NA NA 33.33 NA 69.23 40.00 NA 86.84 NA NA NA 30.77 NA 52.17 50.00 NA NA NA NA 35.29 37.04 NA NA 70.00 NA NA 30.77 NA NA NA K alternative_acceptor CG11266,RI_chr2L_7033019_7034764,I_chr2L_7034274_7035406,RI_chr2L_7034911_7035074,I_chr2L_7051093_7051366 chr2L + chr2L_7036036_7036187 chr2L_7036036_7036184 chr2L_7035637_7036035;chr2L_7036188_7036722 95.88 89.29 100.00 96.00 92.86 90.91 93.33 100.00 94.12 95.65 100.00 100.00 100.00 100.00 100.00 100.00 88.89 94.12 90.00 89.47 100.00 94.74 95.92 94.12 96.67 100.00 96.67 95.24 96.00 96.00 95.24 100.00 97.67 87.10 94.74 NA 97.78 98.08 92.31 94.00 100.00 89.47 100.00 96.55 100.00 96.30 86.36 93.94 89.74 95.45 97.50 95.24 100.00 95.83 94.12 93.33 90.00 97.14 N intron_retention CG40467 chr3LHet - chr3LHet_787757_789080 chr3LHet_787756_787757;chr3LHet_789080_789081 chr3LHet_787671_787756;chr3LHet_789081_789255 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 4.65 NA 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 1.82 NA 12.50 NA 0.00 NA 0.00 NA 0.00 0.00 K alternative_acceptor RpL22,noncoding_21234,snoRNA:Psi18S-531,snoRNA:Psi28S-2179 chrX - chrX_657019_658334;chrX_657022_658334 chrX_657025_658334 chrX_658335_658556;chrX_656593_657018 100.00 100.00 100.00 99.93 100.00 100.00 100.00 100.00 99.94 100.00 100.00 100.00 99.86 100.00 99.90 99.91 100.00 99.86 100.00 100.00 100.00 99.89 100.00 100.00 100.00 99.87 100.00 99.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.92 100.00 100.00 99.94 99.89 99.94 99.85 100.00 99.91 100.00 100.00 99.84 100.00 99.89 100.00 99.84 99.81 100.00 99.90 99.91 99.93 99.94 K jcn_only_AA CG16965,CG34163,escl chr2L + chr2L_11988330_11988386 chr2L_11988330_11988383 chr2L_11988313_11988329;chr2L_11988387_11988801 100.00 NA 96.15 100.00 100.00 NA 93.88 100.00 100.00 NA 100.00 93.75 97.37 94.59 100.00 96.67 100.00 96.30 97.83 100.00 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 98.11 100.00 NA NA NA NA NA 96.77 NA NA NA NA NA 100.00 NA NA 100.00 K intron_retention Doa,I_chr3R_24715823_24718923,I_chr3R_24738109_24738303,I_chr3R_24747391_24747896 chr3R + chr3R_24726745_24745213 chr3R_24726744_24726745;chr3R_24745213_24745214 chr3R_24726546_24726744;chr3R_24745214_24745289 4.50 5.08 7.22 3.68 7.81 10.26 12.24 5.00 5.63 3.19 3.92 6.63 7.84 6.17 6.03 4.84 9.26 2.74 7.14 3.81 1.64 4.72 3.48 2.84 4.48 4.17 1.94 4.44 3.17 7.41 6.10 3.17 5.08 4.76 5.22 3.17 5.83 1.23 4.10 9.55 3.70 4.41 8.20 3.36 0.00 4.17 4.67 7.84 4.50 4.20 4.27 1.82 3.12 5.56 3.42 3.45 5.19 7.14 K alternative_acceptor CG14614,REI_chrX_21856047_21856229,RI_chrX_21856896_21857109 chrX - chrX_21856896_21857109;chrX_21856924_21857109 chrX_21857041_21857109 chrX_21857110_21857209;chrX_21856796_21856895 78.31 78.79 66.67 83.67 83.33 83.87 70.59 78.57 81.82 93.33 79.49 88.73 74.29 78.95 69.57 87.50 72.73 71.05 82.86 85.29 70.27 62.07 74.51 89.74 83.33 78.05 NA 77.78 75.00 70.59 71.11 80.00 89.47 90.00 86.36 64.29 74.47 63.89 71.11 87.10 NA 83.33 73.33 66.67 72.22 65.22 82.76 80.00 81.03 72.73 67.50 69.23 78.57 76.47 82.93 73.91 78.95 NA K alternative_last_exon CG16833,I_chr2L_10994022_10994325,I_chr2L_10994919_10997334 chr2L + chr2L_10994022_10994848;chr2L_10994022_10997334 chr2L_10994022_10995843 chr2L_10997335_10997425 chr2L_10995844_10995912 chr2L_10993922_10994021 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG7203,cdc14,RI_chr2L_7806524_7806667 chr2L - chr2L_7803577_7804570;chr2L_7803044_7804570 chr2L_7803744_7804570 chr2L_7804571_7804915;chr2L_7802415_7803043 16.67 NA NA 33.33 NA NA NA NA 16.67 NA NA 40.00 NA NA 0.00 NA NA NA NA 20.00 NA 40.00 12.50 25.00 NA NA NA NA 16.67 NA NA NA 20.00 NA NA 14.29 7.69 11.11 16.67 NA NA 16.67 NA 16.67 0.00 33.33 NA 28.57 14.29 NA NA NA 9.09 NA NA 33.33 NA 33.33 K intron_retention RhoGAP71E,I_chr3L_15583097_15589765 chr3L + chr3L_15582166_15582458 chr3L_15582165_15582166;chr3L_15582458_15582459 chr3L_15581999_15582165;chr3L_15582459_15583096 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 98.68 100.00 98.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.12 100.00 100.00 100.00 100.00 100.00 100.00 99.19 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD scrib,I_chr3R_22362324_22363015,I_chr3R_22381374_22399575,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22362120_22363092;chr3R_22362315_22363092;chr3R_22362254_22363092;chr3R_22362224_22363092;chr3R_22362324_22363092;chr3R_22362142_22363092 chr3R_22362244_22363092 chr3R_22363093_22363115;chr3R_22362112_22362119 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention vari,I_chr2L_20789508_20789585,I_chr2L_20792267_20794059 chr2L - chr2L_20789661_20789720 chr2L_20789660_20789661;chr2L_20789720_20789721 chr2L_20789586_20789660;chr2L_20789721_20790052 0.00 2.70 2.82 3.80 0.00 2.00 2.78 3.23 2.42 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.26 1.32 0.00 2.56 0.93 2.17 8.00 3.39 0.00 10.87 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 1.02 0.00 1.80 1.47 2.86 0.00 0.00 0.00 0.99 0.00 0.00 0.00 1.23 1.38 1.18 0.00 1.14 0.00 0.00 0.00 0.76 K intron_retention alpha-Cat,I_chr3L_23319053_23319787,I_chr3L_23319057_23319748,I_chr3L_23319861_23321813,I_chr3L_23327841_23328002 chr3L - chr3L_23318924_23318988 chr3L_23318923_23318924;chr3L_23318988_23318989 chr3L_23318742_23318923;chr3L_23318989_23319052 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG10984 chr3L + chr3L_12743840_12744406 chr3L_12743840_12743901;chr3L_12743956_12744406 chr3L_12743902_12743955 chr3L_12743704_12743839;chr3L_12744407_12746022 0.00 NA 0.00 0.00 NA NA 0.00 3.45 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 K intron_retention I_chr3R_11826508_11826910,GATAe chr3R + chr3R_11844318_11844378 chr3R_11844317_11844318;chr3R_11844378_11844379 chr3R_11843987_11844317;chr3R_11844379_11844611 90.00 80.00 NA NA 90.91 NA 92.86 92.86 93.10 NA 77.78 80.00 93.33 90.00 92.31 90.00 NA 83.33 92.86 90.00 NA 78.57 75.00 72.73 NA 88.89 72.73 NA 90.91 NA 88.89 NA 85.71 100.00 NA 87.50 84.62 NA 92.86 84.62 NA 93.75 NA 93.33 NA NA NA 90.91 94.44 NA 100.00 NA NA NA 90.91 NA NA NA K jcn_only_AA egr,I_chr2R_5970832_5970930,I_chr2R_5970999_5971058 chr2R + chr2R_5970832_5970908;chr2R_5970832_5970926 chr2R_5970832_5970930 chr2R_5970767_5970831;chr2R_5970931_5970998 0.18 0.46 0.35 0.30 0.35 0.00 0.00 0.00 0.34 0.00 0.35 0.22 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.36 0.41 0.21 0.36 0.16 0.00 0.38 0.55 0.00 0.34 0.58 0.97 0.46 0.48 0.24 0.00 0.33 0.18 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.42 0.17 0.17 0.36 0.30 0.00 0.00 0.26 0.42 0.11 0.00 K intron_retention RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522912_523215 chrX_522911_522912;chrX_523215_523216 chrX_522849_522911;chrX_523216_523351 100.00 100.00 100.00 94.74 100.00 100.00 99.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA 97.44 100.00 100.00 100.00 100.00 100.00 94.12 94.12 100.00 NA 100.00 NA 100.00 100.00 92.86 100.00 100.00 97.22 100.00 100.00 96.97 NA 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 95.24 100.00 100.00 NA 95.65 100.00 100.00 K intron_retention Dscam,F_chr2R_3219886_3228832,F_chr2R_3226043_3235353,F_chr2R_3227948_3235353,F_chr2R_3228738_3235353,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3229897_3235353 chr2R_3229896_3229897;chr2R_3235353_3235354 chr2R_3229647_3229896;chr2R_3235354_3235453 100.00 NA NA NA NA NA 100.00 100.00 100.00 NA NA 91.67 NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA 93.33 NA NA NA NA NA NA NA NA NA K jcn_only_AA l(1)G0255,CG4095 chrX + chrX_6572650_6573858 chrX_6572650_6573827 chrX_6572590_6572649;chrX_6573859_6573990 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette scny,I_chr3L_5763034_5768288 chr3L + chr3L_5767177_5768288 chr3L_5767177_5767513;chr3L_5767947_5768288 chr3L_5767514_5767946 chr3L_5767039_5767176;chr3L_5768289_5768388 6.88 7.34 5.62 6.76 8.00 4.40 4.21 4.21 7.91 5.49 7.41 6.12 5.36 5.71 6.90 16.18 4.62 4.11 4.76 5.39 4.55 9.71 7.25 6.45 6.56 7.84 5.22 13.27 10.11 8.24 9.86 12.50 18.42 6.31 5.66 4.60 5.56 4.80 6.74 12.20 9.52 8.33 6.15 12.00 10.92 12.20 5.92 12.62 6.88 7.34 7.80 7.32 6.14 4.90 7.69 7.56 4.35 14.43 K jcn_only_AD RpL5,I_chr2L_22428750_22428846 chr2L - chr2L_22429111_22429352 chr2L_22429111_22429268 chr2L_22428847_22429110;chr2L_22429353_22429396 99.32 99.37 99.50 99.41 99.40 99.60 99.79 98.56 99.75 98.82 99.50 99.71 99.76 99.67 98.36 99.81 98.81 99.38 98.89 99.52 99.32 97.75 99.80 99.86 99.80 98.29 99.63 82.93 81.71 95.35 97.14 87.76 85.35 98.83 97.89 95.97 99.96 99.97 99.93 58.74 72.44 97.84 99.14 88.22 91.25 88.53 99.79 77.99 98.40 99.89 99.89 99.91 94.46 99.59 98.62 99.64 99.92 94.50 K alternative_donor ref(2)P,RI_chr2L_19545002_19545062,I_chr2L_19545002_19545156,EI_chr2L_19548696_19549582 chr2L + chr2L_19545002_19545156 chr2L_19545102_19545156 chr2L_19545157_19545162;chr2L_19544902_19545001 99.73 99.52 100.00 99.60 100.00 99.38 100.00 99.55 99.73 99.67 99.24 99.68 100.00 100.00 100.00 98.59 100.00 99.21 100.00 99.50 99.18 99.73 100.00 99.75 99.64 100.00 100.00 100.00 98.68 100.00 100.00 100.00 99.69 99.58 99.56 99.61 99.72 100.00 99.79 100.00 99.70 99.69 99.09 99.71 99.79 100.00 99.77 99.67 100.00 99.80 99.71 100.00 99.49 99.67 99.35 99.70 100.00 100.00 K jcn_only_AD key,I_chr2R_20674247_20674291,I_chr2R_20674567_20674813,I_chr2R_20674654_20674897,RI_chr2R_20676692_20676888 chr2R - chr2R_20673207_20673264 chr2R_20673207_20673258 chr2R_20673138_20673206;chr2R_20673265_20673618 43.81 43.15 42.45 50.35 38.39 47.45 44.07 35.63 45.00 37.50 47.65 45.55 46.89 44.51 50.18 45.16 40.50 43.56 46.60 37.70 43.21 42.74 51.57 45.86 49.04 44.90 51.18 47.00 34.08 38.53 44.79 36.52 44.43 40.88 42.40 33.67 43.01 43.81 45.41 48.29 43.69 44.89 40.43 45.67 40.08 37.39 38.55 39.15 45.08 39.29 46.63 42.53 41.07 41.51 45.70 46.72 45.79 37.66 K jcn_only_AD wdb,I_chr3R_23394314_23406731,I_chr3R_23394314_23406794,I_chr3R_23394314_23407159,RI_chr3R_23394314_23407186,I_chr3R_23394314_23407412,I_chr3R_23394314_23407715,I_chr3R_23394314_23407721,RI_chr3R_23406048_23406731,RI_chr3R_23406048_23406794,I_chr3R_23406048_23406928,RI_chr3R_23406048_23407402 chr3R - chr3R_23406048_23406928;chr3R_23406048_23406865;chr3R_23406048_23407402 chr3R_23406048_23407723 chr3R_23405948_23406047;chr3R_23407724_23407815 91.30 NA 96.15 100.00 NA NA 79.17 90.91 91.18 NA NA 93.02 NA 80.77 100.00 79.17 95.45 NA NA 88.89 NA 89.86 92.86 89.29 92.59 93.94 96.55 NA 92.59 90.00 91.30 85.00 NA 85.71 82.14 86.49 96.88 96.15 NA 95.35 95.24 80.43 NA 95.45 90.48 NA 80.00 86.67 86.05 95.00 92.68 NA NA NA 92.00 NA NA NA K intron_retention cenG1A,RI_chr2L_13836433_13850514 chr2L + chr2L_13897362_13897425 chr2L_13897361_13897362;chr2L_13897425_13897426 chr2L_13896986_13897361;chr2L_13897426_13898699 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7971,DMG5-3L.3.021,I_chr3L_1659363_1659845,I_chr3L_1667736_1667806 chr3L - chr3L_1654727_1654806 chr3L_1654726_1654727;chr3L_1654806_1654807 chr3L_1654519_1654726;chr3L_1654807_1654811 11.80 NA NA 26.32 NA NA NA 0.00 19.05 NA NA 10.53 NA 26.67 NA 29.41 NA NA NA 12.50 NA 6.67 10.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 17.65 NA 14.29 11.11 NA 12.50 NA 12.50 NA 15.38 11.11 NA 10.53 0.00 9.52 NA NA NA NA NA NA NA K intron_retention CG12659 chrX - chrX_8485536_8485594 chrX_8485535_8485536;chrX_8485594_8485595 chrX_8484649_8485535;chrX_8485595_8485743 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 6.25 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 4.35 2.38 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 K jcn_only_AD CG11148,I_chr4_886499_886547,RI_chr4_886921_887162 chr4 - chr4_886499_886556 chr4_886499_886547 chr4_886399_886498;chr4_886557_886647 0.00 0.00 0.00 0.00 0.00 1.61 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 1.82 0.00 0.00 0.00 1.09 1.92 0.00 1.22 0.00 0.00 0.00 2.63 0.00 NA 0.00 1.60 1.56 0.00 2.73 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 6.25 0.00 0.00 1.75 1.82 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG5199,RI_chr3L_20445700_20445776 chr3L - chr3L_20445700_20445776 chr3L_20445700_20445772 chr3L_20445600_20445699;chr3L_20445777_20445876 89.00 NA NA NA NA NA NA 85.00 96.00 NA NA 82.76 NA NA 95.24 92.59 NA NA NA 70.83 NA NA NA 95.65 NA NA NA NA NA NA NA 85.71 77.27 NA 90.00 96.43 80.00 NA NA 94.64 87.50 88.00 NA NA NA 92.59 NA 86.96 87.10 NA 88.00 NA 90.00 90.91 NA NA NA 100.00 K intron_retention ps,I_chr3R_5269733_5270765 chr3R + chr3R_5271618_5271690 chr3R_5271617_5271618;chr3R_5271690_5271691 chr3R_5270977_5271617;chr3R_5271691_5272170 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention MB8.chr3R.pasa.66,ref1,RI_chr3R_2904130_2904237,I_chr3R_2904452_2904543 chr3R - chr3R_2904742_2904975 chr3R_2904741_2904742;chr3R_2904975_2904976 chr3R_2904544_2904741;chr3R_2904976_2905177 0.00 0.00 1.36 0.86 0.00 0.00 0.54 0.96 0.00 0.00 0.00 0.35 1.82 0.00 0.52 1.52 0.00 0.00 0.00 0.00 0.00 1.11 0.60 0.58 0.00 2.04 2.11 1.81 0.85 0.00 0.68 1.75 0.00 0.96 0.00 0.51 0.53 0.00 0.54 1.01 0.00 0.61 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Klp31E,RfC3 chr2L + chr2L_10419424_10419479 chr2L_10419423_10419424;chr2L_10419479_10419480 chr2L_10419359_10419423;chr2L_10419480_10419930 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 10.53 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 K intron_retention scu,RhoGAP16F chrX + chrX_17988131_17989117 chrX_17988130_17988131;chrX_17989117_17989118 chrX_17987993_17988130;chrX_17989118_17990486 41.18 NA NA 41.67 15.38 NA NA 41.18 44.44 NA NA 30.77 NA NA NA 66.67 NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA 24.53 NA NA 35.71 NA NA NA NA NA NA NA 41.18 NA NA NA NA NA 41.67 45.45 NA NA NA NA NA NA NA NA NA N jcn_only_AA Clic chrX - chrX_13707761_13707907 chrX_13707839_13707907 chrX_13707908_13708018;chrX_13707363_13707760 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.02 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention WASp,I_chr3R_24656400_24656715,I_chr3R_24656400_24656880,I_chr3R_24656400_24657416 chr3R - chr3R_24656400_24656715 chr3R_24656399_24656400;chr3R_24656715_24656716 chr3R_24656300_24656399;chr3R_24656716_24656815 82.85 NA NA 60.00 NA NA 85.71 NA 72.73 NA NA 70.00 NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG12428,I_chr3R_23531574_23532266 chr3R - chr3R_23531574_23531981 chr3R_23531627_23531981 chr3R_23531982_23531987;chr3R_23531474_23531573 13.33 NA NA NA NA NA 13.33 NA 14.29 NA NA NA NA NA NA NA NA NA NA 0.00 NA 26.32 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 18.18 NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA K intron_retention Rab27,sta chrX - chrX_1368926_1370288 chrX_1368925_1368926;chrX_1370288_1370289 chrX_1368708_1368925;chrX_1370289_1370963 73.32 77.78 76.92 NA 58.33 54.55 85.71 88.89 57.89 88.89 60.00 68.42 NA 60.00 90.00 90.91 NA 100.00 66.67 65.62 NA 77.78 68.18 86.67 83.33 70.00 72.22 75.00 84.62 93.33 75.00 86.96 80.95 72.22 90.91 90.91 78.57 71.43 70.00 63.83 72.22 78.95 NA 60.00 68.97 53.57 76.19 70.73 62.50 61.11 63.64 92.31 45.45 93.33 84.62 52.38 36.36 74.42 K alternative_donor scu,RhoGAP16F chrX + chrX_17987656_17989117;chrX_17987638_17989117;chrX_17988127_17989117 chrX_17988131_17989117 chrX_17989118_17990486;chrX_17987544_17987637 70.00 50.00 81.82 69.23 100.00 61.54 60.00 76.47 79.31 80.00 87.50 66.67 50.00 73.33 71.43 60.00 46.15 70.00 66.67 78.57 50.00 80.00 72.73 75.00 30.00 90.91 54.55 66.67 55.56 66.67 77.14 87.50 83.33 78.95 25.00 83.33 70.00 72.73 88.89 58.82 87.50 64.00 66.67 63.64 75.00 78.57 60.00 92.31 78.26 54.55 40.00 62.50 60.00 71.43 71.43 54.55 70.00 64.29 K alternative_acceptor CG6845,I_chr3L_148414_148465,I_chr3L_148414_148475,I_chr3L_148414_148489 chr3L + chr3L_148414_148465;chr3L_148414_148475;chr3L_148414_148489 chr3L_148414_148461 chr3L_148350_148413;chr3L_148490_148555 87.88 88.89 86.67 83.33 92.86 76.47 90.91 91.43 88.37 66.67 90.91 92.31 73.33 85.71 89.47 80.00 100.00 86.67 100.00 87.88 70.00 92.31 72.73 76.47 80.00 86.67 82.35 57.14 100.00 90.91 93.10 90.91 88.89 91.43 75.00 90.91 100.00 75.00 78.57 82.61 90.00 84.38 93.33 92.31 80.00 81.25 90.00 76.47 85.29 94.12 85.71 80.00 100.00 69.23 95.00 93.33 87.50 92.31 K intron_retention Taf1 chr3R + chr3R_2479013_2479744 chr3R_2479012_2479013;chr3R_2479744_2479745 chr3R_2478682_2479012;chr3R_2479745_2479777 13.33 NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 13.33 NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA 13.33 NA 14.29 20.00 NA 25.00 NA NA NA 26.67 NA 23.08 0.00 0.00 NA NA NA NA NA NA NA NA K intron_retention ssp4,RI_chr2R_13409412_13411004,I_chr2R_13409412_13411328,I_chr2R_13409412_13411588,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13411077_13411588 chr2R_13411076_13411077;chr2R_13411588_13411589 chr2R_13411005_13411076;chr2R_13411589_13411688 89.18 NA NA 88.89 NA NA 89.47 100.00 89.47 NA NA 92.31 NA NA 88.89 100.00 NA 72.73 NA 81.25 NA NA 90.91 NA NA NA NA NA NA NA 88.89 NA NA 84.62 NA NA 87.50 NA NA 100.00 NA 88.24 NA NA NA NA NA NA 92.31 NA 100.00 NA NA NA 88.89 NA NA NA K intron_retention Ten-m,EI_chr3L_22298865_22299141,I_chr3L_22300015_22300646,I_chr3L_22374182_22399991 chr3L - chr3L_22300015_22300646 chr3L_22300014_22300015;chr3L_22300646_22300647 chr3L_22299915_22300014;chr3L_22300647_22300652 18.75 NA NA NA NA NA NA NA 23.81 NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 18.75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG8232 chr2R + chr2R_4815860_4815962 chr2R_4815859_4815860;chr2R_4815962_4815963 chr2R_4815675_4815859;chr2R_4815963_4816153 0.00 0.00 0.00 3.85 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 2.27 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K intron_retention Gnf1,I_chr3R_749200_749265 chr3R + chr3R_734813_734870 chr3R_734812_734813;chr3R_734870_734871 chr3R_733970_734812;chr3R_734871_735803 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 2.50 0.00 0.00 1.79 1.27 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 K cassette Rho1,I_chr2R_11990455_11992537,RI_chr2R_11991687_11992537 chr2R + chr2R_11991280_11993221 chr2R_11991280_11992537;chr2R_11992688_11993221 chr2R_11992538_11992687 chr2R_11991116_11991279;chr2R_11993222_11993302 100.00 100.00 99.90 99.87 100.00 100.00 99.93 100.00 99.96 100.00 99.86 99.94 99.45 100.00 100.00 99.84 100.00 100.00 100.00 100.00 100.00 99.88 100.00 99.91 100.00 99.88 99.90 100.00 98.59 100.00 100.00 100.00 99.90 100.00 100.00 100.00 99.89 100.00 100.00 99.94 100.00 99.95 99.86 99.90 100.00 99.93 100.00 100.00 100.00 99.88 99.91 100.00 100.00 100.00 100.00 99.90 100.00 100.00 N jcn_only_AA Adgf-A,Msi,F_chr3L_17749926_17757161 chr3L - chr3L_17747522_17757161;chr3L_17756677_17757161;chr3L_17747526_17757161 chr3L_17749920_17757161 chr3L_17757162_17757241 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.22 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.21 0.00 0.00 0.35 0.09 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.12 0.15 0.00 0.17 0.17 0.12 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG16940,I_chr3L_212783_212843,Kaz1-ORFA_Kaz1-ORFB chr3L + chr3L_215452_215504 chr3L_215451_215452;chr3L_215504_215505 chr3L_215386_215451;chr3L_215505_215624 12.06 12.00 0.00 59.26 0.00 5.88 19.44 22.50 8.16 NA 0.00 11.76 12.50 14.81 14.29 20.00 6.67 0.00 15.38 17.78 4.17 16.67 24.14 13.89 26.67 28.00 16.67 18.52 43.75 10.00 11.54 25.00 10.71 15.38 5.26 16.67 12.12 0.00 2.86 10.42 32.00 19.44 11.11 10.53 12.00 21.05 0.00 32.00 19.05 9.09 14.29 5.00 12.00 0.00 15.38 4.00 0.00 0.00 K jcn_only_AD sax,CG1882 chr2R + chr2R_3700197_3700785;chr2R_3700238_3700785 chr2R_3700498_3700785 chr2R_3700786_3702250;chr2R_3700011_3700196 85.71 86.76 88.89 85.92 93.55 73.47 88.62 87.69 81.82 87.93 94.29 88.78 82.93 86.96 81.16 78.69 88.89 73.17 78.26 80.95 88.46 76.33 88.37 84.09 82.76 87.50 81.02 91.60 86.99 89.47 71.95 85.42 89.00 94.37 84.21 88.42 87.16 83.70 81.42 87.23 82.52 80.95 88.24 87.96 76.47 78.00 91.75 81.67 79.79 81.93 82.52 80.95 89.19 85.71 87.27 87.32 81.69 84.00 K alternative_donor Fmr1,I_chr3R_5930712_5930781,I_chr3R_5934794_5935245,I_chr3R_5934801_5935537 chr3R - chr3R_5930733_5930790 chr3R_5930733_5930781 chr3R_5930601_5930732;chr3R_5930791_5930881 8.33 7.53 4.82 8.17 10.53 10.08 8.33 9.27 6.85 9.48 6.70 7.85 6.67 8.27 6.55 7.49 7.97 6.86 11.49 9.06 8.72 10.99 11.29 10.56 7.14 7.02 9.39 8.09 15.33 8.25 7.84 13.75 11.41 6.84 10.81 6.29 12.61 9.29 7.98 9.86 6.09 9.39 4.88 9.59 8.55 12.93 9.92 9.50 7.55 8.04 9.68 8.08 8.86 7.55 7.25 5.56 9.28 8.44 K intron_retention TepII,I_chr2L_7696207_7698724,I_chr2L_7697158_7697976 chr2L - chr2L_7698552_7698724 chr2L_7698551_7698552;chr2L_7698724_7698725 chr2L_7698532_7698551;chr2L_7698725_7698824 7.14 NA NA NA NA NA NA 21.43 15.38 NA NA NA NA NA NA 11.11 NA NA 14.29 0.00 NA NA NA 0.00 NA NA 7.14 NA NA NA 6.67 NA NA 8.33 NA NA NA NA NA 4.76 NA 7.69 NA 0.00 NA 0.00 NA NA NA NA 30.77 NA NA NA NA NA NA 0.00 K jcn_only_AA Pect,I_chr2L_13207997_13208109,E_chr2L_13208285_13210076 chr2L + chr2L_13208778_13209492;chr2L_13208778_13209501;chr2L_13208778_13209471 chr2L_13208778_13209435 chr2L_13208665_13208777;chr2L_13209502_13209599 20.37 17.78 16.96 45.40 27.50 20.95 11.69 21.72 23.26 19.14 13.54 22.88 36.90 20.06 22.25 17.55 28.28 14.56 23.24 19.86 18.42 21.67 20.37 21.28 25.00 24.38 19.90 25.50 27.71 22.03 22.26 20.57 23.38 18.44 22.30 11.48 17.23 19.75 17.78 18.43 24.88 18.99 22.10 20.89 18.81 18.06 21.20 18.25 20.20 23.08 24.73 22.71 13.53 16.60 17.09 19.08 16.22 17.90 K intron_retention CPTI,I_chr2R_6360956_6361439,I_chr2R_6360956_6365128 chr2R - chr2R_6360956_6365864 chr2R_6360955_6360956;chr2R_6365864_6365865 chr2R_6360856_6360955;chr2R_6365865_6366047 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 9.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K alternative_acceptor CG1140,I_chr3L_1964610_1964836 chr3L + chr3L_1964610_1965074;chr3L_1964610_1964836 chr3L_1964610_1965059 chr3L_1964541_1964609;chr3L_1965075_1965273 0.00 0.00 2.50 0.00 3.70 0.00 2.38 1.67 1.25 0.00 3.33 1.20 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.85 0.00 0.00 1.89 0.00 2.78 3.33 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 3.33 0.00 2.94 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 1.96 0.00 0.00 2.27 0.00 K intron_retention shu chr2R - chr2R_19730602_19730658 chr2R_19730601_19730602;chr2R_19730658_19730659 chr2R_19729851_19730601;chr2R_19730659_19730718 0.00 0.00 5.56 16.67 NA NA 0.00 0.00 7.41 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 8.57 13.33 0.00 0.00 0.00 11.11 NA 12.50 22.22 NA NA 0.00 NA NA 0.00 0.00 0.00 3.85 0.00 0.00 0.00 NA 6.25 NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA K jcn_only_AA CG16838,I_chr3L_16125390_16125510 chr3L + chr3L_16125390_16125485;chr3L_16125390_16125639 chr3L_16125390_16125588 chr3L_16125290_16125389;chr3L_16125640_16126338 2.17 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA 0.00 NA 4.35 NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA 0.00 K intron_retention CG11155,I_chr4_1151213_1151903,I_chr4_1152027_1152114,I_chr4_1152220_1152710,I_chr4_1152585_1152687 chr4 + chr4_1152023_1152114 chr4_1152022_1152023;chr4_1152114_1152115 chr4_1151927_1152022;chr4_1152115_1152214 7.41 NA NA 10.53 NA NA NA 16.67 13.79 NA NA 5.56 NA NA NA 0.00 7.69 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 7.41 NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG14544,I_chr3R_21886081_21886658 chr3R + chr3R_21885984_21886658 chr3R_21886081_21886658 chr3R_21886659_21886758;chr3R_21885981_21885983 1.37 2.27 3.70 8.00 0.00 4.76 0.00 9.38 0.00 0.00 NA 4.35 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 5.00 7.69 0.00 1.37 3.12 0.00 4.26 0.00 3.57 0.00 8.70 2.78 2.56 0.00 8.70 5.88 0.00 2.04 1.89 2.78 0.00 0.00 NA 0.00 0.00 1.52 1.39 0.00 1.45 1.22 1.79 2.94 1.15 3.64 0.00 1.72 0.00 0.00 K alternative_donor CG3529 chr3L + chr3L_9442916_9443117 chr3L_9442925_9443117 chr3L_9443118_9443168;chr3L_9442789_9442915 100.00 100.00 88.89 100.00 NA 88.89 100.00 100.00 100.00 94.12 100.00 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 96.15 100.00 NA 100.00 100.00 93.75 NA NA 100.00 100.00 87.50 100.00 100.00 94.74 100.00 100.00 100.00 100.00 95.24 NA 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 NA 100.00 100.00 100.00 K intron_retention CG6876,CG6878 chr3L + chr3L_15152369_15152424 chr3L_15152368_15152369;chr3L_15152424_15152425 chr3L_15152206_15152368;chr3L_15152425_15152876 4.35 6.25 4.65 3.77 0.00 0.00 12.50 0.00 9.23 0.00 6.67 3.23 7.41 7.14 0.00 0.00 5.88 0.00 9.09 7.32 10.00 3.39 7.35 4.17 7.41 0.00 3.12 8.57 3.74 2.70 15.38 1.47 1.27 10.00 4.76 0.00 4.41 2.70 5.66 6.02 4.04 2.60 3.85 6.12 4.76 2.56 7.69 2.26 10.34 10.26 6.12 4.35 6.12 0.00 4.17 5.26 0.00 0.00 K intron_retention CG2316,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_210055,I_chr4_209875_210628,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_211303,RI_chr4_210688_211927,I_chr4_210688_213991,I_chr4_210688_214019,I_chr4_210688_214049,RI_chr4_210688_214450 chr4 - chr4_209150_209203 chr4_209149_209150;chr4_209203_209204 chr4_209051_209149;chr4_209204_209368 0.00 0.00 0.00 2.60 0.00 0.00 0.00 1.89 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K jcn_only_AA sqh,I_chrX_6118043_6119039,I_chrX_6118150_6118725,I_chrX_6118150_6118729,I_chrX_6118150_6118790,I_chrX_6118150_6118800 chrX - chrX_6118043_6119039 chrX_6118150_6119039 chrX_6119040_6119139;chrX_6117943_6118042 99.83 100.00 100.00 100.00 99.79 99.59 99.86 99.70 99.83 99.17 100.00 99.80 99.78 99.55 99.42 100.00 99.76 100.00 99.64 99.89 99.78 99.24 99.85 99.83 100.00 100.00 99.84 100.00 100.00 100.00 99.85 100.00 99.70 99.75 99.58 99.63 99.76 99.43 100.00 99.83 100.00 99.70 100.00 100.00 100.00 99.87 99.65 99.41 99.90 99.87 99.85 99.77 99.65 99.67 99.83 99.84 99.75 100.00 K intron_retention CG33097,I_chr3R_2191538_2191675,I_chr3R_2199103_2199426 chr3R - chr3R_2190448_2190725 chr3R_2190447_2190448;chr3R_2190725_2190726 chr3R_2190382_2190447;chr3R_2190726_2190876 47.83 50.00 60.00 60.87 77.78 NA 68.42 80.00 60.87 41.18 63.64 72.73 NA 60.00 90.91 52.17 NA 58.33 75.00 47.50 NA 33.33 42.86 46.15 47.06 NA 50.00 40.00 33.33 44.44 22.73 28.57 23.33 61.90 46.15 39.13 37.04 46.67 55.56 40.91 41.67 58.62 58.33 29.17 25.00 48.15 32.14 30.00 69.57 50.00 46.43 66.67 NA 40.00 60.00 54.17 NA 38.46 N alternative_donor prominin-like,I_chr3L_3121200_3123087 chr3L - chr3L_3117406_3117833 chr3L_3117406_3117486 chr3L_3117346_3117405;chr3L_3117834_3117973 7.23 5.37 7.44 7.26 6.07 7.91 8.02 6.36 7.05 5.59 3.64 5.98 6.81 7.55 6.69 19.64 5.13 5.65 5.26 4.44 4.48 4.91 8.03 9.13 10.90 3.05 10.31 12.90 7.41 9.42 7.11 13.33 15.71 5.93 9.74 7.84 6.43 6.85 8.71 8.43 12.26 6.55 4.28 4.35 10.00 8.89 4.44 13.45 6.59 11.71 9.72 6.67 7.23 5.95 7.61 6.12 11.69 10.14 K alternative_donor fs(1)h,I_chrX_7938425_7938871,I_chrX_7938425_7938878,I_chrX_7938449_7944184,I_chrX_7950171_7952371,I_chrX_7954192_7955240 chrX - chrX_7938425_7944184;chrX_7938425_7938878 chrX_7938425_7938871 chrX_7938366_7938424;chrX_7944185_7944284 20.45 16.13 28.30 28.41 18.75 20.45 36.14 26.92 31.65 10.64 19.44 12.71 36.73 43.40 31.58 49.48 26.09 34.21 28.33 20.35 27.03 7.81 11.76 7.06 23.08 23.26 20.59 15.94 13.24 23.68 25.93 19.44 13.89 32.69 19.44 17.65 10.00 8.77 10.67 26.13 9.68 18.18 28.26 22.22 17.24 29.23 17.19 10.00 30.15 18.03 12.84 24.49 18.87 25.71 35.29 16.33 29.73 18.95 K intron_retention TMS1 chr3L + chr3L_16407594_16407914 chr3L_16407593_16407594;chr3L_16407914_16407915 chr3L_16407384_16407593;chr3L_16407915_16408056 25.42 32.80 30.67 17.34 27.94 28.57 15.93 26.44 26.43 23.81 25.37 20.42 26.87 26.92 21.25 32.73 34.69 20.90 24.56 19.19 29.23 26.64 26.92 24.07 33.33 37.78 25.42 48.78 23.66 22.09 20.00 18.87 13.48 29.36 28.17 23.94 27.81 30.21 24.31 28.24 22.50 21.71 32.69 32.77 23.02 19.55 30.00 28.09 20.29 23.53 24.47 42.86 24.05 26.03 22.73 30.77 22.45 8.99 K intron_retention Rab39 chrX + chrX_7629369_7629796 chrX_7629368_7629369;chrX_7629796_7629797 chrX_7628958_7629368;chrX_7629797_7630876 16.67 7.69 8.00 20.45 13.04 33.33 10.26 17.65 22.92 12.50 0.00 18.42 4.35 23.08 18.18 28.21 NA 27.27 14.81 16.67 14.29 40.00 12.50 13.79 NA 17.39 18.52 20.00 26.32 12.50 25.81 20.00 19.23 17.78 NA 9.09 8.33 0.00 14.29 27.59 16.67 12.07 7.14 12.50 9.09 25.00 19.05 14.29 21.74 4.35 17.65 21.74 9.52 14.29 10.71 14.29 20.00 18.52 K intron_retention CG18170,CG33230,ABCB7 chr3L + chr3L_1618618_1618847 chr3L_1618617_1618618;chr3L_1618847_1618848 chr3L_1618392_1618617;chr3L_1618848_1619063 14.49 14.89 13.11 33.33 11.11 19.15 19.30 9.09 11.71 21.57 13.21 16.25 6.98 16.67 15.62 12.64 13.33 15.22 25.00 13.21 17.02 14.17 14.29 15.79 17.46 18.75 24.00 31.85 23.14 11.93 17.46 13.51 11.85 7.94 16.28 19.78 15.62 19.61 13.13 13.24 21.54 13.08 11.11 13.04 21.21 19.27 9.68 18.35 10.42 14.49 17.78 22.45 9.52 13.64 9.23 12.90 11.84 10.45 K intron_retention CG7358,I_chrX_18784661_18784773 chrX - chrX_18784482_18784773 chrX_18784481_18784482;chrX_18784773_18784774 chrX_18784100_18784481;chrX_18784774_18784782 91.99 90.00 91.67 92.31 90.91 NA 100.00 100.00 88.89 NA NA 92.86 NA 90.00 92.31 NA NA 90.00 87.50 90.91 NA 94.12 84.62 80.00 90.91 100.00 86.67 91.67 90.00 90.91 100.00 100.00 100.00 92.86 NA 100.00 100.00 66.67 93.75 100.00 NA 100.00 NA 90.91 100.00 87.50 83.33 NA 93.33 92.31 92.86 100.00 NA 100.00 90.00 88.89 90.00 NA K intron_retention Cp1,Aats-phe chr2R + chr2R_9854068_9854259 chr2R_9854067_9854068;chr2R_9854259_9854260 chr2R_9853999_9854067;chr2R_9854260_9854474 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA NA NA NA 100.00 100.00 NA NA NA NA 100.00 NA 92.86 NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA NA 100.00 NA K alternative_donor HSPC300,I_chr2R_19915648_19915744,I_chr2R_19915648_19915903,I_chr2R_19915648_19916060 chr2R - chr2R_19915648_19915744;chr2R_19915648_19916136 chr2R_19915648_19915903 chr2R_19915548_19915647;chr2R_19916137_19916160 1.47 1.25 0.68 2.38 3.33 0.00 0.99 1.98 3.36 0.00 4.76 2.50 0.00 1.96 1.48 3.12 4.44 0.94 2.44 0.87 1.52 1.96 1.19 1.47 2.50 1.47 0.00 2.33 0.95 1.45 0.65 0.52 0.90 1.48 1.18 1.23 0.00 0.00 1.67 0.83 0.58 1.78 1.19 1.39 1.50 1.66 1.90 1.42 1.44 2.04 2.27 2.44 1.45 1.94 0.00 1.98 3.40 1.84 K intron_retention CG17574,I_chr2R_8737398_8737465 chr2R - chr2R_8737544_8737603 chr2R_8737543_8737544;chr2R_8737603_8737604 chr2R_8737466_8737543;chr2R_8737604_8737733 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.78 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.60 4.35 4.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG3500,RI_chr2R_19244231_19244378 chr2R - chr2R_19244194_19244378 chr2R_19244211_19244378 chr2R_19244379_19244478;chr2R_19244131_19244193 0.75 1.16 0.94 0.00 0.00 1.67 1.20 0.97 1.03 2.56 0.00 0.56 0.00 0.00 0.89 0.86 0.00 1.06 0.00 1.19 2.30 0.00 0.51 2.26 0.00 0.00 0.70 1.00 0.00 1.76 2.38 0.78 0.91 2.96 0.00 0.00 0.00 0.56 0.00 1.19 0.75 1.34 2.99 0.56 0.88 0.38 0.70 0.00 2.40 2.03 1.14 0.00 0.00 0.70 0.91 0.53 0.62 1.80 K intron_retention AGO2 chr3L + chr3L_15551439_15551493 chr3L_15551438_15551439;chr3L_15551493_15551494 chr3L_15551350_15551438;chr3L_15551494_15552103 1.83 1.33 1.79 4.60 1.46 2.66 2.53 1.07 2.57 0.74 3.25 1.37 0.94 1.59 2.10 2.67 2.17 2.22 2.02 1.57 0.53 2.04 2.76 1.82 7.22 8.24 5.18 3.89 16.06 1.89 5.05 0.00 1.83 1.97 2.12 11.19 1.27 0.73 1.09 1.09 6.47 1.77 2.55 2.00 0.00 2.09 0.00 1.53 2.48 0.80 1.22 2.25 0.00 1.48 1.71 0.00 0.44 1.68 K intron_retention CG30492,C_chr2R_3522706_3523025,RI_chr2R_3536203_3536977,I_chr2R_3543397_3543455 chr2R + chr2R_3536016_3536087 chr2R_3536015_3536016;chr2R_3536087_3536088 chr2R_3535973_3536015;chr2R_3536088_3536202 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 NA 0.00 NA 2.27 0.00 2.56 0.00 0.00 3.03 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 1.92 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA gpp,I_chr3R_2271795_2272181 chr3R + chr3R_2232814_2233271 chr3R_2232814_2233199 chr3R_2232804_2232813;chr3R_2233272_2233496 100.00 NA NA 100.00 NA NA 100.00 100.00 97.40 NA NA 100.00 97.62 97.22 NA 100.00 100.00 NA 100.00 100.00 NA 95.24 100.00 NA NA NA 100.00 NA NA 100.00 NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA 97.92 92.00 NA NA NA NA 97.14 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 K intron_retention CG2046 chr3R - chr3R_1619791_1619843 chr3R_1619790_1619791;chr3R_1619843_1619844 chr3R_1619363_1619790;chr3R_1619844_1620039 3.39 4.62 3.23 4.21 2.00 0.00 6.17 2.22 2.50 5.56 0.00 3.45 0.00 5.00 1.52 5.48 0.00 3.45 3.33 5.71 0.00 1.64 6.52 6.02 18.42 0.00 9.52 11.11 5.88 0.00 6.67 2.00 1.92 3.77 2.33 16.13 1.15 0.00 2.30 5.56 22.22 6.35 0.00 3.39 0.00 3.39 3.45 4.35 5.15 6.90 4.00 0.00 2.56 0.00 4.29 3.03 1.25 7.27 K jcn_only_AD Mapmodulin,I_chr2R_13756314_13756411,RI_chr2R_13756314_13756450,I_chr2R_13756314_13756571 chr2R - chr2R_13756314_13758833 chr2R_13756314_13756571 chr2R_13756214_13756313;chr2R_13758834_13759000 0.34 0.00 0.00 0.65 0.00 0.93 0.51 0.89 0.65 0.00 0.00 0.00 0.00 0.00 1.53 0.80 0.84 1.30 0.00 0.75 0.00 0.00 1.32 0.00 1.22 0.91 0.00 3.57 0.00 1.92 0.00 0.00 0.00 0.34 0.00 1.09 0.00 0.00 1.71 0.42 0.71 0.66 0.00 0.00 0.00 0.00 1.77 0.54 0.92 0.00 0.00 0.00 1.22 1.16 0.00 0.95 0.79 0.47 K alternative_acceptor Spf45 chr2L - chr2L_22960834_22960931 chr2L_22960877_22960931 chr2L_22960932_22961115;chr2L_22959877_22960833 81.36 82.35 85.42 83.84 86.67 80.00 90.32 77.53 85.45 86.67 86.21 90.91 76.74 81.25 86.27 78.22 79.41 87.88 87.93 81.36 92.86 84.44 67.61 71.93 82.50 92.16 73.33 83.33 80.00 69.23 58.23 81.82 75.68 87.63 75.51 97.62 83.87 85.29 82.05 80.36 74.07 81.91 84.09 77.05 67.74 78.79 76.47 67.57 79.17 80.70 82.89 78.57 72.09 76.60 81.54 81.48 80.56 65.22 K alternative_acceptor RpII15 chr3R + chr3R_10134845_10134906 chr3R_10134845_10134899 chr3R_10134776_10134844;chr3R_10134907_10135970 66.67 90.00 66.67 66.67 57.14 73.33 73.68 67.86 66.67 90.00 84.21 72.73 60.00 71.43 67.86 66.67 61.90 73.33 57.14 75.61 57.89 50.00 NA 45.45 NA 75.00 90.00 75.00 87.50 NA 55.00 63.64 80.00 60.00 NA NA 62.96 NA 50.00 73.08 NA 63.89 72.22 71.43 65.22 70.00 NA NA 62.50 78.57 NA 60.00 69.23 NA 64.00 66.67 56.00 61.54 K mutually_exclusive E_chr2RHet_2881760_2912543,eIF-4B,I_chr2RHet_2903246_2904697,I_chr2RHet_2903246_2912532,I_chr2RHet_2904787_2912543,I_chr2RHet_2912605_2917250 chr2RHet + chr2RHet_2903246_2915424,chr2RHet_2915525_2917250 chr2RHet_2903246_2912543,chr2RHet_2912605_2917250 chr2RHet_2915425_2915524 chr2RHet_2912544_2912604 chr2RHet_2903146_2903245;chr2RHet_2917251_2917256 0.00 NA NA 8.70 NA NA 20.00 25.00 22.22 NA NA 0.00 NA NA 0.00 14.29 NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA 22.22 NA 15.38 NA NA NA NA NA NA NA NA 0.00 18.18 NA NA NA 25.00 0.00 0.00 0.00 0.00 NA NA NA 22.22 NA NA NA 0.00 0.00 K intron_retention CG31619 chr2L + chr2L_21712967_21713027 chr2L_21712966_21712967;chr2L_21713027_21713028 chr2L_21712790_21712966;chr2L_21713028_21713308 0.00 0.00 1.14 0.57 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG8116,I_chr3R_4542126_4542214,RI_chr3R_4542291_4542625,RI_chr3R_4542291_4542652,I_chr3R_4542561_4542617,I_chr3R_4545118_4545525 chr3R + chr3R_4542291_4542622;chr3R_4542291_4542625 chr3R_4542291_4542617 chr3R_4542215_4542290;chr3R_4542626_4542717 82.76 NA 90.00 76.47 71.43 NA 92.86 81.82 79.63 87.88 76.19 91.43 90.00 NA 96.15 91.67 77.27 80.00 91.67 77.05 75.00 84.42 84.38 82.76 NA NA 71.43 84.13 83.75 85.37 90.48 82.35 87.30 77.42 65.00 84.00 83.78 NA 73.08 75.82 78.79 82.22 NA 83.72 79.49 83.08 NA 80.00 79.41 80.00 84.85 NA 84.00 NA 72.00 NA NA 83.58 K intron_retention CG30499,I_chr2R_3452363_3452552 chr2R - chr2R_3452363_3452562 chr2R_3452362_3452363;chr2R_3452562_3452563 chr2R_3452263_3452362;chr2R_3452563_3452652 0.00 0.63 0.00 1.21 0.00 0.00 0.70 0.00 0.00 1.68 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.53 0.55 0.00 0.00 0.39 0.00 K alternative_acceptor betaTub60D chr2R + chr2R_20198354_20198418 chr2R_20198354_20198415 chr2R_20198245_20198353;chr2R_20198419_20198660 37.50 31.84 25.59 37.07 29.58 28.08 32.18 38.70 36.01 44.01 26.12 39.59 28.72 32.26 30.24 35.11 28.87 29.61 25.29 37.78 27.34 40.38 37.81 40.40 36.77 34.24 39.59 37.29 40.55 36.19 28.93 39.43 47.44 34.20 39.59 38.57 36.92 37.67 37.59 41.06 43.82 38.14 32.33 39.79 40.87 41.53 36.61 44.88 35.91 38.70 41.18 34.57 37.50 39.10 28.09 39.88 38.21 45.27 K jcn_only_AD CG5794,I_chr3R_20475643_20475715 chr3R - chr3R_20475643_20475721 chr3R_20475643_20475715 chr3R_20475543_20475642;chr3R_20475722_20475736 72.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 72.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor cenB1A chr3R + chr3R_18946972_18947058 chr3R_18946976_18947058 chr3R_18947059_18947354;chr3R_18946959_18946971 63.07 NA 60.00 63.64 NA NA 62.50 45.00 66.67 NA NA 66.67 NA NA 53.85 NA NA 60.00 NA 90.91 NA NA NA NA NA NA NA NA NA NA NA NA 80.00 50.00 NA NA NA NA NA 84.62 NA 62.50 NA NA NA NA NA 90.00 66.67 NA NA NA NA NA 60.00 NA NA NA K alternative_donor Vha26,I_chr3R_1417761_1418260,I_chr3R_1417761_1418275,I_chr3R_1418045_1418289 chr3R + chr3R_1417761_1418289 chr3R_1418045_1418289 chr3R_1418290_1418360;chr3R_1417710_1417760 0.67 0.81 0.56 0.35 0.58 0.37 0.97 0.47 0.65 0.77 0.46 0.34 0.43 0.00 0.29 0.86 0.47 0.67 0.29 0.61 1.06 3.92 0.88 1.73 0.56 0.61 1.49 1.40 4.19 0.50 1.12 1.20 1.19 0.51 1.18 2.74 0.50 1.33 0.83 0.63 1.94 0.71 0.38 0.37 1.08 0.89 0.43 2.07 0.59 1.09 0.70 1.35 0.53 0.52 0.54 0.47 0.99 0.82 K intron_retention RI_chr3L_21188731_21188785,CG33054,CG33056 chr3L - chr3L_21191829_21191980 chr3L_21191828_21191829;chr3L_21191980_21191981 chr3L_21191500_21191828;chr3L_21191981_21192283 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 1.79 0.00 0.00 6.52 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 NA 0.00 0.00 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA I_chr3R_16141663_16144698,CG5077,I_chr3R_16147605_16147670 chr3R + chr3R_16146174_16147197 chr3R_16146174_16147059 chr3R_16145951_16146173;chr3R_16147198_16147358 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD Syb chr2R - chr2R_6137333_6137873;chr2R_6137333_6138451 chr2R_6137333_6138021 chr2R_6137005_6137332;chr2R_6138452_6138649 0.00 0.00 NA 13.24 NA NA NA 14.49 0.00 NA 0.00 0.00 NA NA NA 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA K intron_retention noncoding_5243,I_chr2R_4553376_4563976,l(2)44DEa,I_chr2R_4553577_4562151,I_chr2R_4553817_4565934,I_chr2R_4554300_4563976,I_chr2R_4559579_4559675,CG30354,I_chr2R_4565692_4565934 chr2R + chr2R_4553817_4554272 chr2R_4553816_4553817;chr2R_4554272_4554273 chr2R_4553717_4553816;chr2R_4554273_4554299 60.55 NA NA 66.67 NA NA 59.26 71.43 50.00 NA NA 92.31 NA 69.23 NA 53.33 60.00 NA 41.67 61.11 NA NA 88.89 NA NA NA 58.82 NA 88.89 NA 54.55 NA NA 62.50 NA 80.00 NA NA NA NA NA 50.00 NA NA NA NA NA NA 52.63 NA NA NA NA NA NA NA NA NA K alternative_donor dorsal,RI_chr2L_17438018_17439189,FI_chr2L_17449369_17450215,noncoding_3500,RI_chr2L_17450002_17450219 chr2L - chr2L_17449369_17450325;chr2L_17449369_17449875;chr2L_17449369_17450219;chr2L_17449369_17450310 chr2L_17449369_17450215 chr2L_17449296_17449368;chr2L_17450326_17450359 1.14 0.00 0.00 1.61 0.00 0.00 1.69 2.67 0.00 0.00 0.00 1.54 6.45 2.70 4.55 1.25 0.00 3.33 2.33 1.30 0.00 0.00 6.45 4.00 0.00 11.43 0.00 0.00 2.22 0.00 1.43 0.00 5.66 1.22 0.00 7.14 0.00 0.00 0.00 1.49 4.08 1.19 2.94 0.00 3.23 1.39 0.00 2.80 1.14 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 3.17 K alternative_donor Marf,I_chrX_6263726_6263783 chrX + chrX_6260105_6260665 chrX_6260266_6260665 chrX_6260666_6261196;chrX_6260018_6260104 98.94 93.75 92.86 96.88 100.00 100.00 97.83 97.14 97.87 100.00 91.67 97.30 95.45 96.00 100.00 97.73 94.44 100.00 94.74 96.43 100.00 88.24 95.65 100.00 100.00 100.00 92.86 100.00 100.00 94.12 95.00 100.00 100.00 97.14 100.00 93.75 100.00 100.00 NA 100.00 100.00 100.00 95.00 90.91 100.00 100.00 88.24 100.00 100.00 100.00 100.00 93.33 100.00 87.50 95.45 100.00 100.00 96.77 K intron_retention CG10289,I_chr3L_6163043_6163216 chr3L - chr3L_6166411_6166476 chr3L_6166410_6166411;chr3L_6166476_6166477 chr3L_6166211_6166410;chr3L_6166477_6166572 0.00 0.00 0.00 9.38 0.00 0.00 3.03 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 9.68 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention Dcp2,F_chr3L_15815909_15816023,F_chr3L_15817090_15817547 chr3L - chr3L_15817090_15818570 chr3L_15817089_15817090;chr3L_15818570_15818571 chr3L_15816990_15817089;chr3L_15818571_15819375 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 1.08 NA 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 3.12 0.00 0.00 5.56 0.00 0.00 2.70 0.00 0.00 3.03 54.84 0.00 0.00 14.29 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.54 0.00 3.33 NA 8.33 0.00 6.67 4.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 14.29 K intron_retention Pi4KIIalpha chr3R - chr3R_1388617_1388686 chr3R_1388616_1388617;chr3R_1388686_1388687 chr3R_1387989_1388616;chr3R_1388687_1389067 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 2.33 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor mr,I_chr2R_19861985_19862040 chr2R + chr2R_19861224_19861309 chr2R_19861224_19861282 chr2R_19861043_19861223;chr2R_19861310_19861984 100.00 100.00 NA 100.00 100.00 90.00 100.00 95.65 100.00 NA 100.00 100.00 100.00 100.00 100.00 95.45 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 92.86 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 93.33 NA 88.89 100.00 K jcn_only_AA Mi-2,Su(Tpl) chr3L - chr3L_19890509_19902346 chr3L_19890514_19902346 chr3L_19902347_19902410;chr3L_19890418_19890508 55.50 47.83 69.57 60.53 52.00 NA 64.41 56.00 65.22 NA NA 65.12 67.65 68.75 71.43 54.84 60.47 48.00 53.85 64.89 NA 30.77 43.64 NA 59.09 NA 59.09 50.00 NA 36.36 58.33 NA NA 47.54 50.00 57.69 43.18 NA NA 54.84 NA 63.46 55.00 54.55 NA NA NA NA 56.90 NA 47.50 NA NA NA 45.71 NA NA NA K jcn_only_AD CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4840394;chr3R_4839215_4840474 chr3R_4839215_4840589 chr3R_4839038_4839214;chr3R_4840590_4840610 6.15 6.06 25.00 22.22 14.29 9.52 0.00 12.24 14.10 NA 17.14 16.67 26.92 12.12 18.52 2.13 17.39 14.81 3.57 14.55 12.50 2.78 2.78 NA NA 21.21 4.88 9.68 0.00 0.00 5.88 15.00 2.04 26.67 4.00 0.00 4.35 10.00 NA 4.40 3.57 27.54 14.29 0.00 27.78 0.00 0.00 5.26 24.56 5.88 6.25 3.12 3.70 NA 11.43 3.45 5.88 0.00 K alternative_donor Pegarn chr3L + chr3L_12784435_12784534;chr3L_12784406_12784534 chr3L_12784392_12784534 chr3L_12784535_12784733;chr3L_12784381_12784391 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 44.44 NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 K intron_retention RluA-2,I_chr2L_10480906_10481097 chr2L + chr2L_10481710_10481762 chr2L_10481709_10481710;chr2L_10481762_10481763 chr2L_10481647_10481709;chr2L_10481763_10481983 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 NA 0.00 0.00 0.00 NA 1.96 NA 4.35 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1523 chr3R - chr3R_24644893_24644943 chr3R_24644892_24644893;chr3R_24644943_24644944 chr3R_24644523_24644892;chr3R_24644944_24645394 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 2.33 0.00 4.35 0.00 8.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 3.70 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor faf,RI_chr3R_27603474_27603893,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27604481_27605081 chr3R_27604481_27604751 chr3R_27603894_27604480;chr3R_27605082_27605230 0.95 1.54 0.00 1.50 0.00 1.27 0.73 0.78 1.00 0.00 1.19 0.61 1.25 1.23 0.00 1.15 1.12 1.10 0.00 1.42 0.00 8.33 0.87 1.39 0.00 0.00 1.33 8.57 3.17 1.37 0.00 0.00 3.48 1.35 1.92 0.00 0.90 0.00 0.00 1.09 2.44 1.17 1.47 0.00 10.53 0.00 3.85 0.00 1.32 0.00 0.00 0.00 0.00 NA 0.00 3.70 0.00 0.00 K intron_retention CG17018,R_chr2L_22312023_22363414,CEI_chr2L_22325847_22356902 chr2L + chr2L_22354402_22354465 chr2L_22354401_22354402;chr2L_22354465_22354466 chr2L_22354334_22354401;chr2L_22354466_22354534 8.19 6.35 29.03 24.09 23.53 25.93 13.33 15.94 7.73 2.74 0.00 13.92 12.50 13.51 19.35 12.10 17.24 13.33 18.52 11.54 7.14 6.17 9.09 4.35 24.00 76.00 14.29 10.67 18.67 4.69 15.38 6.67 5.06 10.66 3.77 32.88 5.36 2.53 5.13 6.45 26.09 8.72 21.43 7.94 2.38 5.45 3.28 5.80 8.19 3.51 7.00 4.85 4.85 2.13 21.21 5.77 0.00 7.89 K jcn_only_AA CG15160 chr2L + chr2L_18593171_18593289 chr2L_18593171_18593277 chr2L_18592400_18593170;chr2L_18593290_18593413 85.71 NA 85.00 84.62 NA 75.00 77.27 100.00 85.00 NA NA 85.19 NA NA NA 80.95 NA NA NA 81.25 NA NA 89.19 88.89 NA NA 88.46 NA NA NA NA NA NA 91.67 NA NA NA NA NA 75.00 NA 91.89 NA NA NA NA 100.00 NA 91.43 87.10 NA 95.24 NA NA NA 85.00 85.71 NA K intron_retention Kdm4B,seq chr2R - chr2R_9075414_9085717 chr2R_9075413_9075414;chr2R_9085717_9085718 chr2R_9075201_9075413;chr2R_9085718_9085796 77.78 NA 75.00 73.91 77.78 NA 80.00 57.69 71.88 100.00 NA 72.73 71.43 77.78 69.23 76.92 90.00 60.00 78.57 58.62 77.78 NA 50.00 NA NA 100.00 NA NA 70.00 NA 71.43 NA 78.57 89.47 NA NA NA NA NA 100.00 NA 84.21 NA NA NA 87.50 75.00 78.95 84.21 NA NA NA NA NA 100.00 NA NA 87.50 K jcn_only_AD Vap-33-1 chrX + chrX_3843206_3843513;chrX_3843099_3843513;chrX_3843406_3843513;chrX_3843214_3843513 chrX_3843210_3843513 chrX_3843514_3843746;chrX_3843030_3843098 0.00 0.00 0.00 0.54 0.00 0.00 0.88 0.00 0.52 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 1.80 0.00 0.00 2.44 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.84 1.22 1.22 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 1.72 0.96 0.00 0.00 0.37 1.49 0.00 0.00 1.22 0.00 0.00 2.38 0.00 0.00 K cassette CG34417,I_chrX_6471146_6471201,I_chrX_6477377_6479725,RI_chrX_6482284_6482336 chrX + chrX_6471146_6479728;chrX_6471146_6479725 chrX_6471146_6471976;chrX_6472325_6479728,chrX_6472325_6479725 chrX_6471977_6472324 chrX_6471070_6471145;chrX_6479729_6479818 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 4.76 0.00 NA 0.00 0.00 3.03 0.00 0.00 0.00 1.22 2.78 2.08 0.00 0.00 0.00 0.00 1.59 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 NA 1.54 0.00 0.00 0.00 0.00 1.59 3.23 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG3831,I_chr2R_18827582_18828137,I_chr2R_18828053_18828484 chr2R - chr2R_18827582_18828137 chr2R_18827582_18827894;chr2R_18828053_18828137 chr2R_18827895_18828052 chr2R_18827482_18827581;chr2R_18828138_18828191 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 NA 100.00 92.86 100.00 NA 100.00 87.50 100.00 100.00 100.00 92.86 100.00 100.00 100.00 85.71 NA NA 100.00 NA NA NA 100.00 NA 100.00 100.00 NA NA 85.71 100.00 100.00 NA NA 91.67 NA 100.00 NA 100.00 NA NA 100.00 NA 100.00 NA NA NA 83.33 NA 100.00 NA N intron_retention trbl,I_chr3L_20390576_20390678 chr3L - chr3L_20393312_20393525 chr3L_20393311_20393312;chr3L_20393525_20393526 chr3L_20393269_20393311;chr3L_20393526_20394677 100.00 NA NA NA NA NA NA NA 100.00 NA NA 36.36 NA NA NA NA NA NA NA 50.00 NA 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2814327_2817753 chr2R_2814327_2816013;chr2R_2816342_2816577;chr2R_2816779_2817327;chr2R_2817604_2817753 chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817328_2817603 chr2R_2814227_2814326;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.25 100.00 98.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 K alternative_donor CG3566 chrX - chrX_6169204_6170260 chrX_6169204_6170086 chrX_6169003_6169203;chrX_6170261_6170329 53.59 45.45 NA NA 16.67 57.14 73.33 50.00 47.83 66.67 44.44 82.61 54.55 58.33 23.81 63.64 NA NA 60.00 33.33 NA 57.14 36.36 53.85 100.00 NA 62.50 NA 76.92 60.00 65.00 40.00 25.00 55.00 NA NA 33.33 NA 38.46 53.33 50.00 55.56 46.15 62.50 40.91 45.83 33.33 55.00 56.25 60.00 60.00 NA 40.00 40.00 52.94 41.67 43.75 59.09 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2388436;chrX_2388671_2389073;chrX_2389272_2389644;chrX_2389762_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2393243 chrX_2388437_2388670;chrX_2389074_2389271;chrX_2389645_2389761;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2393244_2393291 13.89 NA NA NA NA NA NA NA 16.67 NA NA 7.69 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 11.11 NA NA 6.67 NA 20.00 NA 16.67 NA NA NA 16.67 0.00 NA NA NA NA NA NA NA NA NA K alternative_donor eIF5,noncoding_24049,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15885416_15885611;chrX_15885416_15885854;chrX_15885416_15885783 chrX_15885416_15885925 chrX_15885316_15885415;chrX_15885926_15885954 9.09 0.00 15.38 10.71 NA 12.50 10.00 14.29 9.09 NA 16.67 14.29 33.33 0.00 0.00 7.32 0.00 20.00 9.09 7.14 0.00 NA NA 14.29 NA 0.00 NA NA NA NA 20.00 NA NA 4.76 0.00 0.00 NA NA NA 10.00 14.29 9.09 0.00 16.67 NA 9.09 NA 14.29 11.90 28.57 0.00 NA NA NA 12.50 NA 0.00 8.33 K intron_retention RI_chr2L_20830210_20830280,CG31674 chr2L + chr2L_20832288_20832339 chr2L_20832287_20832288;chr2L_20832339_20832340 chr2L_20831950_20832287;chr2L_20832340_20832465 14.29 NA NA NA NA NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Syx13,RI_chr3L_13037959_13038017,CG11279 chr3L + chr3L_13037950_13038017 chr3L_13037949_13037950;chr3L_13038017_13038018 chr3L_13037903_13037949;chr3L_13038018_13038117 60.00 53.33 71.43 67.86 60.00 NA 46.15 60.00 70.97 NA 58.33 54.17 70.00 63.64 73.33 45.16 NA NA 80.00 51.61 46.15 52.94 78.95 50.00 66.67 56.25 75.00 69.23 51.72 53.85 66.67 56.25 43.75 68.75 53.85 84.21 54.17 46.15 88.24 86.67 70.59 62.50 NA 35.71 50.00 45.45 55.56 56.25 62.07 53.85 75.00 72.73 77.78 NA 66.67 57.14 61.11 52.63 K intron_retention CG5989 chr3L - chr3L_8596950_8597005 chr3L_8596949_8596950;chr3L_8597005_8597006 chr3L_8596857_8596949;chr3L_8597006_8597074 24.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.38 NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA 33.33 NA NA NA NA NA NA NA NA NA NA 37.50 NA NA NA NA NA NA NA K intron_retention CG17018 chr2L + chr2L_22367174_22367235 chr2L_22367173_22367174;chr2L_22367235_22367236 chr2L_22365415_22367173;chr2L_22367236_22367497 1.26 0.00 0.00 2.06 0.00 2.86 4.00 1.22 1.48 0.00 0.00 2.28 1.35 2.26 1.64 1.52 0.00 0.00 1.52 1.88 0.00 0.00 2.23 1.94 0.00 0.00 2.27 3.61 0.00 0.00 2.23 0.00 0.00 2.16 1.06 2.04 0.00 0.00 0.93 1.24 0.00 1.68 1.32 1.26 0.00 1.64 1.89 0.00 2.51 0.00 1.27 2.25 0.00 0.00 1.16 4.00 1.91 2.23 K jcn_only_AD AcCoAS,I_chr3L_21265768_21265818,I_chr3L_21265768_21265914 chr3L - chr3L_21265768_21265914 chr3L_21265768_21265822 chr3L_21265668_21265767;chr3L_21265915_21265918 100.00 100.00 99.02 98.25 100.00 100.00 100.00 99.18 99.34 100.00 100.00 98.66 100.00 100.00 98.94 97.67 96.67 100.00 100.00 100.00 98.46 100.00 100.00 98.84 97.50 97.62 100.00 NA 100.00 100.00 97.37 98.39 95.24 99.19 97.92 100.00 96.88 100.00 100.00 98.90 97.78 97.97 98.08 100.00 100.00 96.30 100.00 96.92 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 97.01 K intron_retention CG11876,CG11877 chr3R + chr3R_24939172_24939715 chr3R_24939171_24939172;chr3R_24939715_24939716 chr3R_24938931_24939171;chr3R_24939716_24939877 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 N jcn_only_AA CG40467 chr3LHet - chr3LHet_722704_789080;chr3LHet_787974_789080 chr3LHet_787757_789080 chr3LHet_789081_789255;chr3LHet_722418_722703 100.00 100.00 100.00 58.97 NA 96.00 100.00 100.00 86.84 NA NA 78.57 66.67 100.00 NA 82.61 NA 100.00 100.00 76.34 NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 85.23 NA 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 K intron_retention CG2316,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_213991,RI_chr4_210688_214450 chr4 - chr4_205241_205295 chr4_205240_205241;chr4_205295_205296 chr4_205175_205240;chr4_205296_205344 0.00 0.00 0.00 5.68 0.00 5.13 3.94 5.06 2.96 0.00 0.00 4.17 0.00 3.85 0.00 4.10 2.70 1.82 2.88 0.00 0.00 0.00 0.00 1.89 0.00 4.44 6.06 4.76 NA 0.00 1.16 0.00 0.00 0.83 0.00 0.00 0.00 0.00 2.86 0.00 0.00 2.24 3.12 0.00 0.00 0.00 0.00 0.00 5.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 K intron_retention CG7766,I_chrX_8993495_8994545,I_chrX_8991338_8991387 chrX - chrX_8992447_8993346 chrX_8992446_8992447;chrX_8993346_8993347 chrX_8992117_8992446;chrX_8993347_8993494 8.33 7.41 9.26 9.26 9.38 13.64 12.05 11.59 10.66 9.09 13.33 11.24 3.92 5.41 5.66 10.17 18.92 6.82 17.65 10.78 11.43 10.81 4.49 7.89 8.47 11.36 8.22 4.44 18.42 7.81 12.50 10.71 7.69 11.11 7.89 4.41 5.06 5.88 2.47 11.70 8.33 12.20 0.00 7.35 8.57 6.82 0.00 4.44 14.67 5.88 6.82 7.14 4.76 5.00 10.94 10.17 3.92 5.41 K multi_cassette unc-13,I_chr4_897821_902468,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_897821_903586 chr4_897821_899476;chr4_899619_902468;chr4_902576_903586 chr4_899477_899618;chr4_902469_902575 chr4_897721_897820;chr4_903587_903686 11.11 NA NA 2.27 NA NA 5.26 2.70 18.18 50.00 NA 6.90 NA 18.18 20.00 8.33 NA NA 9.09 16.67 NA 6.25 11.11 8.33 0.00 0.00 8.82 0.00 11.11 8.33 15.38 NA 23.08 17.39 NA 0.00 21.43 NA NA 16.67 7.69 5.26 NA 16.67 NA 18.18 NA 5.26 12.00 NA 12.50 25.00 NA NA 18.18 NA NA NA K intron_retention CG3191,CG3091,I_chrX_2147635_2147990 chrX - chrX_2144983_2145045 chrX_2144982_2144983;chrX_2145045_2145046 chrX_2144680_2144982;chrX_2145046_2145127 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 14.29 15.79 NA NA NA NA 5.00 NA NA NA NA NA NA NA 0.00 0.00 0.00 10.00 NA NA 0.00 NA NA NA NA 5.56 NA 9.52 0.00 NA NA NA NA NA NA 0.00 NA N jcn_only_AD CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4987298_4987906;chr2L_4987319_4987906 chr2L_4987241_4987906 chr2L_4987907_4988048;chr2L_4987159_4987240 100.00 100.00 96.15 100.00 100.00 100.00 98.08 100.00 98.86 100.00 100.00 96.30 100.00 96.30 100.00 100.00 100.00 95.65 100.00 100.00 100.00 72.09 98.31 100.00 100.00 100.00 100.00 NA 100.00 100.00 98.11 96.97 95.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 96.36 96.77 96.49 100.00 94.64 97.78 100.00 100.00 100.00 95.45 100.00 97.67 96.15 100.00 100.00 K jcn_only_AA CG5989 chr3L - chr3L_8596950_8597005 chr3L_8596956_8597005 chr3L_8597006_8597074;chr3L_8596857_8596949 80.00 80.95 NA 81.82 NA NA 76.00 NA 80.43 NA 76.92 94.74 NA NA 80.00 NA NA NA NA 80.70 85.00 69.23 85.44 81.71 75.00 NA 74.55 81.82 77.59 68.57 NA 80.00 76.47 NA 75.86 78.57 83.33 86.54 83.33 70.27 83.33 83.33 NA 75.00 68.57 75.44 80.36 NA 84.00 77.36 77.05 81.40 90.57 76.92 76.19 77.97 83.33 NA K jcn_only_AD MTA1-like,I_chr3R_1472938_1473838 chr3R - chr3R_1472938_1474218 chr3R_1472938_1474012 chr3R_1472838_1472937;chr3R_1474219_1474591 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.46 0.00 0.00 1.36 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 2.17 0.65 0.85 1.45 1.37 0.00 0.00 0.00 0.83 1.41 2.13 0.74 0.00 1.09 2.35 0.78 0.00 0.00 1.03 0.00 0.00 1.41 1.57 0.00 2.60 2.08 1.59 0.00 1.82 0.00 0.00 0.00 0.00 0.00 1.72 0.00 1.08 K intron_retention Roe1 chr2R + chr2R_9441772_9441891 chr2R_9441771_9441772;chr2R_9441891_9441892 chr2R_9441618_9441771;chr2R_9441892_9442186 0.00 0.00 0.00 3.45 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.47 0.00 0.00 0.00 0.00 1.49 1.37 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 2.78 5.00 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor mys,I_chrX_7958795_7961094 chrX + chrX_7955904_7957872;chrX_7955908_7957872;chrX_7955759_7957872;chrX_7956114_7957872;chrX_7955901_7957872;chrX_7956125_7957872;chrX_7955967_7957872 chrX_7955914_7957872 chrX_7957873_7958492;chrX_7955741_7955758 4.58 7.46 4.58 3.72 1.85 4.55 5.11 3.98 3.81 1.22 5.00 3.83 0.00 4.96 2.58 4.60 4.00 2.36 3.82 4.01 5.69 3.85 9.78 8.97 4.08 3.70 14.29 8.11 4.07 5.32 3.56 3.39 4.55 4.62 8.47 12.96 5.19 5.17 7.06 6.81 5.77 3.36 4.12 5.10 3.30 5.15 6.25 3.29 3.85 9.09 10.00 3.39 5.36 18.75 3.39 6.67 8.86 3.08 K intron_retention par-1,I_chr2R_15359242_15360944,I_chr2R_15359251_15360944,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15360437_15360500 chr2R_15360436_15360437;chr2R_15360500_15360501 chr2R_15360324_15360436;chr2R_15360501_15360669 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.36 2.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention bwa,I_chr2L_20069515_20073377,I_chr2L_20073310_20073377 chr2L + chr2L_20072647_20073138 chr2L_20072646_20072647;chr2L_20073138_20073139 chr2L_20072354_20072646;chr2L_20073139_20073207 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 NA 96.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 100.00 NA NA NA NA 100.00 NA 100.00 NA NA NA NA 100.00 100.00 100.00 NA NA NA 100.00 NA 100.00 NA K intron_retention MTA1-like chr3R - chr3R_1468687_1468745 chr3R_1468686_1468687;chr3R_1468745_1468746 chr3R_1468498_1468686;chr3R_1468746_1469066 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.17 2.17 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N mutually_exclusive htt,I_chr3R_24527763_24528033,I_chr3R_24542203_24543363 chr3R + chr3R_24547447_24549542,chr3R_24549792_24550721 chr3R_24547447_24547531,chr3R_24547720_24550721 chr3R_24549543_24549791 chr3R_24547532_24547719 chr3R_24546562_24547446;chr3R_24550722_24551085 56.52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 56.52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG8929 chr2R + chr2R_16214899_16215371 chr2R_16214898_16214899;chr2R_16215371_16215372 chr2R_16214792_16214898;chr2R_16215372_16215639 50.00 53.33 36.36 45.45 63.64 26.09 73.08 48.48 57.58 NA 50.00 48.84 46.15 69.23 60.00 50.00 60.00 46.15 59.26 38.46 50.00 22.58 62.07 45.45 38.89 69.23 69.57 70.00 78.57 66.67 82.35 NA NA 61.29 44.00 45.83 27.78 50.00 50.00 70.00 66.67 50.00 50.00 70.59 41.67 43.48 55.56 50.00 43.59 45.45 61.29 58.82 71.43 39.13 45.45 50.00 50.00 57.14 K intron_retention olf186-F,CG30323 chr2R + chr2R_13738966_13742644 chr2R_13738965_13738966;chr2R_13742644_13742645 chr2R_13738563_13738965;chr2R_13742645_13742687 68.75 66.67 92.86 68.75 90.91 71.43 88.89 71.43 73.53 NA 44.44 67.74 NA 68.75 66.67 83.33 90.91 63.64 80.00 43.75 40.00 70.00 51.72 42.86 50.00 NA 63.64 NA 64.29 52.63 90.91 NA 69.57 74.07 78.57 77.78 58.33 44.44 57.14 68.42 NA 82.14 72.73 69.23 NA NA NA 90.00 75.86 NA 52.63 NA NA NA 61.11 NA NA NA K intron_retention dSyno chr3R + chr3R_27598521_27598575 chr3R_27598520_27598521;chr3R_27598575_27598576 chr3R_27598464_27598520;chr3R_27598576_27598764 0.00 0.00 0.00 6.00 0.00 3.45 4.44 5.80 3.70 0.00 0.00 2.70 0.00 0.00 0.00 2.70 0.00 0.00 0.00 1.47 9.38 8.82 0.00 0.00 NA 5.00 0.00 NA 9.52 0.00 5.77 NA 0.00 0.00 0.00 7.41 0.00 0.00 0.00 0.00 0.00 2.78 0.00 NA 0.00 0.00 0.00 0.00 2.60 6.45 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ppk28 chrX + chrX_16701991_16702053 chrX_16701990_16701991;chrX_16702053_16702054 chrX_16701396_16701990;chrX_16702054_16702418 15.19 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.38 NA NA NA NA NA NA NA NA NA K intron_retention CG33097,I_chr3R_2191538_2191675,I_chr3R_2199103_2199426 chr3R - chr3R_2192010_2192069 chr3R_2192009_2192010;chr3R_2192069_2192070 chr3R_2191676_2192009;chr3R_2192070_2193553 21.05 26.47 23.68 12.94 25.00 10.20 25.00 17.57 25.26 14.29 15.79 17.24 21.21 26.47 17.24 23.53 23.53 17.07 20.00 14.12 13.33 17.65 16.46 25.00 19.05 10.34 19.35 32.35 19.15 13.16 8.33 30.30 14.81 17.95 26.83 22.86 21.74 19.23 25.86 25.35 12.20 20.00 21.05 25.45 12.77 21.74 25.00 15.69 21.18 19.57 17.65 24.14 39.29 29.41 21.74 27.50 23.68 34.62 K cassette bmm,I_chr3L_14772123_14772190 chr3L - chr3L_14770086_14770438 chr3L_14770086_14770205;chr3L_14770342_14770438 chr3L_14770206_14770341 chr3L_14769603_14770085;chr3L_14770439_14770707 10.87 11.11 10.00 25.00 11.63 7.81 7.69 19.33 18.24 3.70 2.44 16.90 22.95 20.63 14.63 9.86 12.50 7.55 12.68 9.20 4.88 16.42 5.33 5.77 9.09 16.07 11.59 33.33 19.64 10.87 17.14 13.79 13.46 12.17 9.52 2.17 8.62 8.51 9.41 9.30 5.00 14.86 14.55 18.75 10.26 10.99 7.81 18.97 12.93 7.94 9.09 12.12 6.45 7.27 16.88 9.52 5.26 5.88 K cassette CG34360,I_chr3R_5769617_5812369 chr3R + chr3R_5769617_5812369 chr3R_5769617_5808000;chr3R_5808093_5812369 chr3R_5808001_5808092 chr3R_5769517_5769616;chr3R_5812370_5812469 80.00 77.78 85.71 83.33 61.54 75.00 90.00 71.43 87.50 73.33 60.00 72.41 69.23 83.33 83.33 80.00 63.64 84.62 76.92 96.15 90.00 90.91 73.33 77.78 63.64 81.82 80.95 90.00 93.75 100.00 91.67 87.50 82.61 86.36 73.68 73.33 74.07 64.29 73.08 66.67 80.00 74.07 69.23 68.18 85.71 85.71 81.82 93.33 80.00 75.00 76.19 87.50 87.50 NA 66.67 80.00 85.71 83.33 K intron_retention CG34413,I_chr2R_20770543_20770586,I_chr2R_20771136_20772048,I_chr2R_20773500_20774745 chr2R + chr2R_20770543_20770599 chr2R_20770542_20770543;chr2R_20770599_20770600 chr2R_20770443_20770542;chr2R_20770600_20770686 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.03 0.00 1.17 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mfrn,I_chr3R_23771063_23772599 chr3R - chr3R_23770115_23770274 chr3R_23770114_23770115;chr3R_23770274_23770275 chr3R_23768481_23770114;chr3R_23770275_23770436 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mys,I_chrX_7958795_7961094 chrX + chrX_7958493_7958565 chrX_7958492_7958493;chrX_7958565_7958566 chrX_7957884_7958492;chrX_7958566_7958794 0.40 0.51 0.88 0.32 0.00 1.26 0.52 0.90 0.87 0.00 0.00 0.79 0.00 0.99 0.81 0.72 0.00 1.44 0.00 0.49 0.00 0.66 0.35 0.00 0.65 0.62 0.40 4.76 1.53 0.47 0.00 1.19 0.00 0.55 1.51 0.62 1.13 0.84 0.00 0.41 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 1.36 0.00 0.00 0.00 0.38 0.00 0.00 0.00 K intron_retention CG5214,I_chr3R_7070385_7070508 chr3R + chr3R_7071606_7071809 chr3R_7071605_7071606;chr3R_7071809_7071810 chr3R_7071461_7071605;chr3R_7071810_7072115 0.00 0.00 0.00 1.48 0.73 0.00 1.23 0.62 0.52 1.18 1.18 0.99 2.70 0.00 0.00 0.00 0.00 1.11 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 1.47 1.43 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.46 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 K jcn_only_AA CG4996,E_chr2R_13627553_13627643,I_chr2R_13629549_13629609 chr2R + chr2R_13627863_13627923 chr2R_13627863_13627919 chr2R_13627644_13627862;chr2R_13627924_13628237 98.46 100.00 96.55 98.46 100.00 NA 98.15 97.56 100.00 NA 100.00 98.11 100.00 100.00 100.00 100.00 100.00 NA 95.00 98.11 100.00 100.00 98.15 100.00 93.55 100.00 90.00 93.33 100.00 100.00 93.18 NA NA 100.00 96.43 97.22 97.50 100.00 97.73 94.74 NA 97.96 NA 97.62 NA NA NA NA 97.78 NA 100.00 100.00 NA NA 93.10 100.00 NA NA K intron_retention CG32062,F_chr3L_10561706_10564172,F_chr3L_10582617_10583219 chr3L + chr3L_10561706_10564148 chr3L_10561705_10561706;chr3L_10564148_10564149 chr3L_10561683_10561705;chr3L_10564149_10564346 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 NA 93.33 91.67 NA 100.00 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 88.89 90.00 NA NA 100.00 NA NA 100.00 K alternative_donor CG16947,I_chr2L_6459995_6460559,I_chr2L_6460482_6460559,I_chr2L_6464140_6465326 chr2L - chr2L_6459995_6460559 chr2L_6459995_6460322 chr2L_6459895_6459994;chr2L_6460560_6460659 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 92.31 NA NA 88.89 NA 100.00 100.00 100.00 NA 80.00 100.00 94.12 100.00 NA 87.50 87.50 100.00 NA 100.00 NA NA 100.00 80.00 100.00 88.89 100.00 83.33 NA 88.89 100.00 91.67 100.00 NA 100.00 100.00 100.00 88.89 87.50 100.00 88.89 90.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 90.00 100.00 K intron_retention membrin chr3L + chr3L_5359836_5359904 chr3L_5359835_5359836;chr3L_5359904_5359905 chr3L_5359532_5359835;chr3L_5359905_5360479 0.00 0.00 0.00 3.57 3.33 0.00 0.00 0.00 2.33 0.00 3.23 0.00 3.45 0.00 0.00 5.26 0.00 0.00 0.00 2.68 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 NA 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG10737 chr2R + chr2R_15062592_15063692;chr2R_15062814_15063692 chr2R_15062754_15063692 chr2R_15063693_15063852;chr2R_15062387_15062591 29.29 31.30 24.80 35.40 26.00 22.73 30.37 32.57 31.17 41.54 33.98 23.94 24.00 29.29 33.33 18.11 27.88 24.58 27.19 22.76 22.47 36.77 35.59 30.87 30.00 25.47 38.21 44.94 38.68 28.35 17.12 31.71 27.81 25.99 26.73 23.73 38.00 37.70 34.38 17.19 29.01 23.29 17.78 32.35 28.21 25.76 29.11 32.50 27.54 37.86 31.07 35.63 30.33 25.42 24.46 31.69 32.86 34.07 K alternative_acceptor mask,I_chr3R_20073365_20073461 chr3R + chr3R_20061993_20062066 chr3R_20061993_20062063 chr3R_20061749_20061992;chr3R_20062067_20062235 73.61 67.86 68.18 73.77 65.38 77.14 62.00 71.67 76.81 71.43 80.77 73.68 72.73 87.50 69.05 72.50 68.75 63.89 64.52 70.83 75.00 68.75 75.61 75.86 65.38 68.42 79.41 75.00 61.54 72.73 78.95 NA 78.57 66.67 79.17 73.53 74.47 73.68 65.22 76.32 NA 72.09 85.19 76.00 NA NA NA 80.95 70.59 NA 72.97 78.57 92.86 NA 80.85 87.50 NA NA K alternative_acceptor RpS18,CG8908,EI_chr2R_16151918_16151997,I_chr2R_16151918_16152036,I_chr2R_16151938_16152065,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151938_16152065;chr2R_16151938_16152036;chr2R_16151938_16152006 chr2R_16151938_16151997 chr2R_16151852_16151937;chr2R_16152066_16152066 99.96 99.96 99.98 99.96 99.98 99.91 99.96 99.98 99.96 100.00 100.00 99.98 99.97 99.97 99.94 99.90 99.94 99.95 99.95 99.97 100.00 99.80 99.94 99.91 99.94 99.95 99.95 99.51 99.92 99.97 99.95 99.93 99.90 99.97 99.96 99.93 99.97 99.98 99.95 99.89 99.91 99.96 99.97 99.97 99.98 99.98 99.98 99.93 99.96 99.95 99.93 99.96 100.00 99.98 99.96 99.90 99.97 99.95 K intron_retention RluA-2,I_chr2L_10480906_10481097 chr2L + chr2L_10481571_10481646 chr2L_10481570_10481571;chr2L_10481646_10481647 chr2L_10481509_10481570;chr2L_10481647_10481707 50.00 NA NA 60.00 NA NA 64.29 43.75 72.73 NA NA 54.55 NA 87.50 NA 16.67 NA NA NA 38.89 NA NA 72.73 NA NA NA 70.00 NA 60.00 NA 29.03 NA 45.45 50.00 NA NA NA NA NA 46.15 NA 50.00 NA NA NA 33.33 NA 53.33 47.06 NA 60.00 NA 46.15 NA NA NA NA 30.00 K jcn_only_AA G-oalpha47A chr2R + chr2R_6325612_6326879 chr2R_6325612_6326820 chr2R_6325496_6325611;chr2R_6326880_6326950 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 4.76 NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA K intron_retention CG3860,RI_chr2R_19882285_19882350 chr2R - chr2R_19882430_19882563 chr2R_19882429_19882430;chr2R_19882563_19882564 chr2R_19882351_19882429;chr2R_19882564_19882575 100.00 NA 92.31 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA 100.00 100.00 K jcn_only_AA CG40439,I_chr2L_22690863_22690905 chr2L - chr2L_22690836_22690905;chr2L_22690863_22690905 chr2L_22690855_22690905 chr2L_22690906_22691005;chr2L_22690763_22690835 6.64 1.92 5.88 7.30 3.33 3.77 9.58 2.99 4.21 19.05 5.00 5.19 14.12 9.09 8.11 9.02 4.62 2.27 7.79 6.90 9.09 10.71 6.67 3.70 2.70 9.68 1.69 3.85 13.64 3.70 4.76 14.63 NA 11.03 7.69 4.35 19.23 NA NA 2.13 7.69 6.67 8.82 10.71 NA 6.78 6.45 0.00 6.62 1.85 2.38 7.14 0.00 NA 6.35 15.38 3.41 8.89 K intron_retention ubl chr2R - chr2R_2697641_2697705 chr2R_2697640_2697641;chr2R_2697705_2697706 chr2R_2697468_2697640;chr2R_2697706_2697844 0.00 0.00 0.00 1.75 1.59 0.00 0.00 0.00 0.57 2.56 0.00 0.00 0.00 0.00 1.10 0.00 0.00 1.47 0.00 0.85 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG5793,I_chr3R_16953555_16953842 chr3R + chr3R_16953940_16954089 chr3R_16953940_16954068 chr3R_16953843_16953939;chr3R_16954090_16954215 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 96.77 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N intron_retention Galpha49B,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8504447_8505299 chr2R_8504446_8504447;chr2R_8505299_8505300 chr2R_8504292_8504446;chr2R_8505300_8505429 36.84 NA NA 36.84 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_acceptor CG1673 chrX + chrX_13294195_13294879 chrX_13294195_13294262 chrX_13294040_13294194;chrX_13294880_13295313 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention zfh1 chr3R + chr3R_26592103_26599294 chr3R_26592102_26592103;chr3R_26599294_26599295 chr3R_26591536_26592102;chr3R_26599295_26599458 0.69 0.44 0.22 2.13 0.95 1.25 0.45 1.25 1.09 0.00 1.01 1.18 1.28 0.54 0.79 1.06 1.05 0.65 0.78 1.53 0.69 10.08 0.90 0.47 0.57 0.56 0.37 2.43 0.65 0.63 0.30 0.00 1.12 0.87 1.33 0.00 0.98 0.87 0.95 0.96 0.00 1.14 0.92 0.39 0.30 0.69 0.99 0.59 0.49 0.54 1.37 0.59 0.00 0.57 0.83 0.28 0.00 0.40 K jcn_only_AD vlc chr2R + chr2R_1589953_1590371;chr2R_1589894_1590371;chr2R_1589805_1590371;chr2R_1590318_1590371;chr2R_1589807_1590371;chr2R_1590294_1590371;chr2R_1589722_1590371;chr2R_1589693_1590371 chr2R_1589799_1590371 chr2R_1590372_1590451;chr2R_1589612_1589692 70.25 70.91 66.67 63.81 76.36 65.31 69.07 69.84 73.73 54.29 73.33 72.95 77.03 67.57 56.94 70.25 65.96 30.95 71.88 83.21 71.70 65.71 79.17 72.73 79.55 71.67 70.67 67.74 46.67 84.91 71.43 70.83 62.71 73.19 76.60 82.69 55.00 64.91 80.00 62.20 60.00 65.15 73.97 54.93 51.61 64.81 72.73 55.56 76.43 73.21 70.59 63.64 70.18 76.47 65.91 72.50 69.57 50.00 K multi_cassette CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2436229_2459590 chr3L_2436229_2439576;chr3L_2439831_2442435;chr3L_2442961_2443389;chr3L_2443839_2443987;chr3L_2444088_2444498;chr3L_2446102_2459590 chr3L_2439577_2439830;chr3L_2442436_2442960;chr3L_2443390_2443838;chr3L_2443988_2444087;chr3L_2444499_2446101 chr3L_2436209_2436228;chr3L_2459591_2459690 100.00 100.00 90.91 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 95.00 90.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 93.75 100.00 100.00 97.50 100.00 94.74 100.00 100.00 100.00 100.00 92.86 95.00 96.77 94.12 96.30 96.15 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 95.24 100.00 100.00 100.00 100.00 92.31 100.00 100.00 K intron_retention Itp-r83A,I_chr3R_1350953_1353255 chr3R + chr3R_1343611_1353300 chr3R_1343610_1343611;chr3R_1353300_1353301 chr3R_1343493_1343610;chr3R_1353301_1353355 29.41 NA NA NA NA NA 50.00 25.00 30.77 NA NA 15.00 NA NA NA 33.33 NA NA NA 22.22 NA NA 31.58 NA NA NA NA NA NA NA NA NA NA 18.75 NA NA 29.41 NA 46.15 40.00 NA 31.25 NA 27.78 NA NA NA NA 16.67 NA 17.65 NA NA NA NA NA NA NA K alternative_acceptor Dad,I_chr3R_12893363_12894192,I_chr3R_12898717_12898778 chr3R + chr3R_12880085_12880773 chr3R_12880085_12880757 chr3R_12879745_12880084;chr3R_12880774_12880896 17.65 NA NA NA NA NA NA NA 17.65 NA NA NA NA NA NA 25.00 NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 18.75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA K intron_retention unc-5,E_chr2R_11238100_11240757,I_chr2R_11252444_11252570 chr2R + chr2R_11245218_11245513 chr2R_11245217_11245218;chr2R_11245513_11245514 chr2R_11244615_11245217;chr2R_11245514_11245795 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 2.56 0.00 0.00 NA 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 K intron_retention sba,I_chr3R_19721149_19722571 chr3R - chr3R_19722331_19722784 chr3R_19722330_19722331;chr3R_19722784_19722785 chr3R_19721931_19722330;chr3R_19722785_19722913 36.36 36.36 34.78 65.22 40.00 35.00 53.85 37.50 32.56 50.00 50.00 38.24 70.00 29.41 55.56 26.09 31.58 38.89 35.29 38.10 35.29 72.94 27.50 26.09 41.38 38.89 44.83 55.32 33.33 37.14 22.73 28.57 51.28 34.62 52.94 60.61 37.50 43.75 33.33 34.00 52.63 28.57 30.77 41.94 38.89 32.00 31.82 44.12 35.48 36.00 34.48 42.86 33.33 26.67 52.17 30.77 31.58 33.33 K intron_retention RpS3A chr4 - chr4_86676_86730 chr4_86675_86676;chr4_86730_86731 chr4_86626_86675;chr4_86731_87364 0.00 0.00 0.00 1.02 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 1.67 4.35 0.00 NA 1.50 1.28 0.00 0.00 0.00 4.94 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.67 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 2.04 0.00 4.17 2.08 0.00 0.00 0.00 6.25 K alternative_acceptor nej,RI_chrX_9578185_9581011 chrX - chrX_9568928_9570544 chrX_9568958_9570544 chrX_9570545_9570702;chrX_9568847_9568927 100.00 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor MB8.chr3R.pasa.66,CG1091,I_chr3R_2910029_2910096,RI_chr3R_2910490_2910686,RI_chr3R_2911041_2911135,RI_chr3R_2946518_2946663 chr3R - chr3R_2910029_2910096 chr3R_2910041_2910096 chr3R_2910097_2910162;chr3R_2909929_2910028 100.00 96.15 100.00 95.83 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 96.97 100.00 100.00 100.00 100.00 98.21 95.45 100.00 100.00 97.78 100.00 100.00 100.00 90.00 96.67 97.14 100.00 100.00 100.00 96.88 95.00 100.00 100.00 100.00 97.83 97.62 96.00 97.22 100.00 96.97 100.00 100.00 100.00 90.32 97.50 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 95.45 K intron_retention Ge-1,Reps,I_chr2L_11105525_11105656 chr2L - chr2L_11100575_11100657 chr2L_11100574_11100575;chr2L_11100657_11100658 chr2L_11100294_11100574;chr2L_11100658_11100866 9.90 8.93 9.21 14.71 10.87 10.53 15.58 9.18 10.66 4.76 18.18 9.90 8.70 8.89 13.46 10.96 7.32 9.62 7.27 9.68 13.46 67.82 13.27 10.00 20.31 36.36 23.68 20.24 32.99 7.22 7.81 9.09 10.50 9.41 14.55 10.94 10.26 11.86 10.34 7.38 15.94 9.57 9.80 8.06 9.80 4.65 8.33 8.64 8.18 10.00 12.86 15.38 3.03 11.11 7.14 3.45 0.00 3.85 K intron_retention mia chr3R - chr3R_1374911_1375314 chr3R_1374910_1374911;chr3R_1375314_1375315 chr3R_1374048_1374910;chr3R_1375315_1375484 5.05 NA NA NA NA NA NA NA 0.00 NA NA 18.75 NA NA NA 25.00 NA NA NA 6.25 NA NA 0.00 3.85 NA NA 14.29 NA NA NA NA NA NA NA NA NA 0.00 0.00 9.09 0.00 NA 25.00 NA NA NA NA NA NA 0.00 16.67 8.70 NA NA 0.00 NA NA NA NA K intron_retention CG32147 chr3L - chr3L_15136811_15136896 chr3L_15136810_15136811;chr3L_15136896_15136897 chr3L_15136138_15136810;chr3L_15136897_15137159 0.00 0.00 0.00 17.24 NA 5.00 5.13 5.71 1.59 0.00 7.41 2.78 NA 16.67 4.76 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 2.50 0.00 0.00 8.33 17.39 4.65 0.00 6.67 1.82 2.33 10.34 0.00 0.00 3.12 0.00 0.00 0.00 0.00 5.13 12.50 0.00 1.56 1.72 0.00 1.18 6.67 0.00 5.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AA I_chr2L_100704_100835,CG11377 chr2L + chr2L_103435_103877 chr2L_103435_103515 chr2L_103006_103434;chr2L_103878_104103 83.54 72.18 87.92 78.33 76.72 85.12 80.57 76.09 75.96 90.05 70.31 77.82 83.33 87.86 82.00 87.70 86.54 91.79 85.29 86.52 77.45 59.09 72.45 73.17 92.41 94.34 60.95 53.29 93.83 86.47 85.71 83.71 84.80 85.11 75.27 73.44 82.29 81.48 83.54 82.13 88.19 85.00 89.26 90.55 85.00 91.27 81.20 86.15 83.56 70.95 75.45 79.76 91.18 70.89 87.10 81.21 81.70 93.27 K alternative_acceptor Tis11,CR33963 chrX + chrX_12553470_12554837 chrX_12553470_12554566 chrX_12553442_12553469;chrX_12554838_12554894 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.04 100.00 100.00 100.00 K alternative_donor sta chrX - chrX_1376949_1377164;chrX_1376949_1377143 chrX_1376949_1377290 chrX_1376851_1376948;chrX_1377291_1377379 99.47 98.82 99.49 99.72 99.59 99.65 99.37 99.73 99.55 98.79 99.72 99.47 99.80 99.54 99.58 99.51 99.61 99.56 99.69 99.70 99.66 98.06 96.76 98.02 99.15 99.76 97.47 98.65 98.69 99.30 98.44 99.49 99.74 99.68 98.06 98.37 99.00 98.11 98.35 99.81 99.39 99.59 99.60 99.65 99.64 99.21 98.23 99.59 99.45 98.46 96.13 98.96 99.47 95.11 99.59 98.46 98.25 99.46 K alternative_donor Zn72D,RF_chr3L_16100887_16102721,I_chr3L_16105199_16105253 chr3L - chr3L_16105199_16105299;chr3L_16105199_16105318;chr3L_16105199_16105431 chr3L_16105199_16105253 chr3L_16105099_16105198;chr3L_16105432_16105487 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 K jcn_only_AD Cyp6u1,RI_chr2R_2860235_2860315 chr2R - chr2R_2860235_2860315 chr2R_2860235_2860292 chr2R_2860135_2860234;chr2R_2860316_2860335 99.36 93.02 100.00 98.31 100.00 100.00 93.18 100.00 100.00 NA 100.00 98.44 96.43 100.00 94.74 97.96 97.30 100.00 97.56 98.72 97.78 96.77 100.00 100.00 100.00 90.48 94.12 100.00 NA 100.00 95.83 97.50 94.44 98.48 100.00 96.97 100.00 100.00 100.00 100.00 96.97 96.67 96.97 100.00 100.00 97.62 100.00 NA 100.00 100.00 98.41 100.00 96.67 100.00 94.74 100.00 97.92 100.00 K intron_retention CG1358,I_chr2R_3485171_3489936 chr2R - chr2R_3485863_3489936 chr2R_3485862_3485863;chr2R_3489936_3489937 chr2R_3485721_3485862;chr2R_3489937_3490036 1.46 2.33 0.00 0.00 0.00 2.78 0.00 0.00 1.46 0.00 0.00 0.96 0.00 5.00 3.57 0.00 2.78 34.78 8.11 0.95 2.38 5.80 4.13 0.86 3.45 7.41 6.25 0.00 2.56 2.94 3.85 1.85 0.00 2.70 1.72 6.56 3.38 2.15 3.92 0.00 10.00 1.68 0.00 0.00 0.00 1.25 0.00 7.69 3.81 0.00 0.00 0.00 0.00 0.00 4.23 0.00 0.00 0.00 K jcn_only_AD frtz chr2L - chr2L_1712543_1712611 chr2L_1712543_1712596 chr2L_1712145_1712542;chr2L_1712612_1713108 100.00 NA NA NA NA NA NA NA NA NA NA 95.24 NA NA 100.00 NA NA NA NA NA NA 100.00 92.31 100.00 NA NA 100.00 NA NA 100.00 NA NA NA 100.00 100.00 100.00 100.00 NA 100.00 97.30 NA NA NA 100.00 NA 100.00 100.00 NA 100.00 96.88 96.15 NA 100.00 100.00 NA NA 100.00 NA K jcn_only_AA Rbp2,I_chrX_16342886_16343906,I_chrX_16343528_16343906 chrX + chrX_16342763_16343909 chrX_16342763_16343906 chrX_16342757_16342762;chrX_16343910_16344006 99.40 100.00 100.00 99.13 99.21 100.00 99.46 99.26 97.89 100.00 97.89 98.60 100.00 98.35 100.00 99.55 100.00 98.13 98.57 99.76 99.19 99.43 100.00 100.00 96.15 98.50 100.00 98.77 98.58 99.55 98.41 98.88 99.28 99.40 100.00 99.08 100.00 100.00 97.44 100.00 98.56 99.52 99.12 99.02 99.54 98.43 100.00 99.55 98.74 NA 97.73 100.00 97.46 NA 98.98 100.00 100.00 99.52 K intron_retention RpL27A,E_chr2L_4457411_4457977,I_chr2L_4458058_4458120 chr2L - chr2L_4458058_4458140 chr2L_4458057_4458058;chr2L_4458140_4458141 chr2L_4457978_4458057;chr2L_4458141_4458220 36.84 NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 43.75 NA 26.67 NA NA 69.23 NA NA NA 10.00 63.64 NA NA NA NA NA NA 46.15 18.75 33.33 61.54 NA NA NA 36.84 NA 28.57 NA NA NA NA 30.77 20.00 NA 33.33 44.44 45.00 K intron_retention CG4615,CG4617 chrX - chrX_6998338_6998393 chrX_6998337_6998338;chrX_6998393_6998394 chrX_6997825_6998337;chrX_6998394_6998513 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 16.67 NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K cassette Art1 chr3R - chr3R_6613427_6613833 chr3R_6613427_6613494;chr3R_6613771_6613833 chr3R_6613495_6613770 chr3R_6613197_6613426;chr3R_6613834_6613927 100.00 99.48 100.00 100.00 100.00 100.00 100.00 100.00 99.70 99.32 100.00 99.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.61 100.00 100.00 100.00 100.00 100.00 99.34 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.19 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD E(Pc) chr2R + chr2R_7339889_7340897;chr2R_7339807_7340897 chr2R_7339818_7340897 chr2R_7340898_7340908;chr2R_7339722_7339806 60.00 NA NA NA NA NA 57.14 NA 45.83 NA NA NA NA NA NA NA NA NA NA 60.00 NA NA 65.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 63.64 NA NA NA NA NA NA NA NA NA NA K intron_retention d4 chr2R + chr2R_1181656_1181710 chr2R_1181655_1181656;chr2R_1181710_1181711 chr2R_1181611_1181655;chr2R_1181711_1182217 100.00 100.00 100.00 100.00 NA 100.00 97.37 95.00 100.00 NA 100.00 100.00 93.33 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 NA NA 100.00 100.00 NA NA NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K intron_retention I_chrX_10148341_10149525,CG34319,noncoding_22888,I_chrX_10152994_10153223 chrX - chrX_10149206_10149525 chrX_10149205_10149206;chrX_10149525_10149526 chrX_10148718_10149205;chrX_10149526_10149619 58.33 58.33 NA 61.54 NA NA 85.71 75.00 88.89 80.95 NA 86.67 NA NA NA NA NA 63.64 60.00 66.67 NA 39.29 64.00 63.16 72.22 69.23 73.33 54.55 35.71 50.00 60.00 41.67 52.63 81.82 35.71 68.57 50.00 50.00 51.85 42.31 76.92 50.00 NA 28.57 36.84 30.00 54.55 58.33 75.00 46.15 65.22 NA 46.15 54.55 100.00 47.06 45.00 50.00 N intron_retention Rho1,I_chr2R_11990455_11992537,RI_chr2R_11991687_11992537 chr2R + chr2R_11991027_11991115 chr2R_11991026_11991027;chr2R_11991115_11991116 chr2R_11990965_11991026;chr2R_11991116_11991279 100.00 100.00 100.00 97.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.19 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_acceptor CG40467 chr3LHet - chr3LHet_722704_789080;chr3LHet_787757_789080 chr3LHet_787974_789080 chr3LHet_789081_789255;chr3LHet_722418_722703 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor Marf,I_chrX_6263726_6263783 chrX + chrX_6263726_6263825 chrX_6263726_6263783 chrX_6263626_6263725;chrX_6263826_6263883 0.00 0.00 0.00 2.00 0.00 0.00 0.00 5.26 0.00 0.00 3.12 2.99 3.23 0.00 2.70 9.52 4.17 0.00 5.71 1.68 2.94 1.05 1.33 1.22 0.00 4.00 2.38 4.08 0.00 0.00 0.00 2.22 0.00 1.92 0.00 0.00 1.43 6.25 0.78 1.23 0.00 1.39 0.00 0.00 2.78 0.00 1.03 0.00 0.00 0.00 1.47 0.00 0.00 0.00 2.27 0.00 0.00 0.00 K intron_retention CG17255,I_chrX_10366177_10366615,RI_chrX_10366177_10367270 chrX - chrX_10366177_10367201 chrX_10366176_10366177;chrX_10367201_10367202 chrX_10366077_10366176;chrX_10367202_10367227 5.56 NA NA 5.56 NA NA NA 0.00 0.00 NA NA 13.04 NA NA NA 0.00 NA NA NA 3.85 NA NA NA NA NA NA NA NA NA NA NA NA NA 10.53 0.00 NA NA NA NA 5.88 NA 5.26 14.29 NA NA NA NA NA 6.67 NA NA NA NA NA 6.25 NA NA NA K intron_retention jar,F_chr3R_20084972_20096616 chr3R - chr3R_20079847_20080355 chr3R_20079846_20079847;chr3R_20080355_20080356 chr3R_20079726_20079846;chr3R_20080356_20080400 20.48 14.29 NA 22.22 NA NA NA NA 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.08 NA NA NA 38.46 NA NA 22.22 NA 15.00 27.78 NA 18.75 NA NA NA NA NA NA 23.53 14.29 30.77 NA NA 15.38 NA 14.29 NA NA K alternative_acceptor Taf6 chr3L + chr3L_19593890_19594012 chr3L_19593890_19594009 chr3L_19593434_19593889;chr3L_19594013_19594247 97.50 96.43 93.75 95.65 90.00 100.00 95.00 93.75 100.00 100.00 92.86 96.97 100.00 100.00 100.00 100.00 100.00 93.75 100.00 98.04 100.00 96.00 100.00 96.30 93.33 100.00 96.30 88.00 97.14 100.00 100.00 100.00 97.67 100.00 96.15 100.00 100.00 96.00 97.44 97.50 100.00 96.55 91.67 100.00 98.18 100.00 97.22 97.83 96.55 97.44 96.67 100.00 95.83 97.30 93.75 100.00 97.06 97.96 K alternative_last_exon CG5946,CG11597 chr3L - chr3L_11812008_11814933 chr3L_11814583_11814933,chr3L_11814820_11814933 chr3L_11811354_11812007 chr3L_11813428_11814582 chr3L_11814934_11815192 4.39 2.34 2.67 1.02 4.29 4.84 5.17 2.50 5.00 5.77 1.72 4.62 5.88 6.25 6.76 11.27 2.53 3.45 4.23 5.23 4.00 3.08 3.10 4.80 3.75 2.17 6.49 13.64 9.23 5.43 6.25 4.84 7.77 3.70 6.15 6.41 3.94 4.39 3.61 6.34 3.85 3.21 5.26 1.49 5.10 3.73 4.95 4.17 5.61 5.95 3.47 5.66 3.85 3.54 2.27 4.39 2.99 4.63 K jcn_only_AA yuri,F_chr2L_15260838_15261717 chr2L - chr2L_15262001_15262069 chr2L_15262013_15262069 chr2L_15262070_15262304;chr2L_15261912_15262000 95.88 95.16 92.80 96.72 93.64 98.00 93.98 96.28 95.63 100.00 94.44 93.75 97.76 95.61 97.06 95.60 97.86 97.48 94.67 95.13 98.08 96.40 96.07 96.22 98.46 95.10 93.94 95.92 94.00 90.24 95.76 89.06 95.79 95.88 97.59 100.00 96.75 96.77 91.87 98.48 98.61 95.82 98.13 96.08 91.09 97.30 96.38 95.59 94.88 93.43 97.71 94.02 93.75 97.30 94.52 96.79 96.54 90.22 K intron_retention slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,I_chr2R_20289332_20290093 chr2R - chr2R_20288504_20288568 chr2R_20288503_20288504;chr2R_20288568_20288569 chr2R_20288305_20288503;chr2R_20288569_20288967 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG2225 chr2L - chr2L_21669914_21670534 chr2L_21669914_21670448;chr2L_21670482_21670534 chr2L_21670449_21670481 chr2L_21669367_21669913;chr2L_21670535_21671140 0.00 0.00 5.00 2.56 0.00 0.00 0.00 2.00 1.92 6.67 5.56 2.86 0.00 3.12 3.12 0.00 0.00 0.00 0.00 2.86 0.00 0.00 NA 6.67 NA 0.00 0.00 NA NA NA 0.00 NA 3.45 1.96 NA 0.00 0.00 NA NA 0.00 0.00 4.55 0.00 0.00 NA 6.25 NA 0.00 0.00 NA 4.76 0.00 NA NA 0.00 NA NA 0.00 K alternative_last_exon alpha-Cat,I_chr3L_23319861_23321813,I_chr3L_23327841_23328002 chr3L - chr3L_23319861_23320593 chr3L_23320425_23320593 chr3L_23319788_23319860 chr3L_23320164_23320424 chr3L_23320594_23320745 2.02 2.56 1.64 1.04 2.78 2.63 2.70 1.09 1.71 NA 3.57 1.16 4.55 2.17 2.17 1.15 2.04 5.71 1.64 1.98 3.12 7.69 1.96 2.08 0.00 0.00 2.33 5.00 16.67 3.85 1.79 0.00 0.00 0.93 0.00 0.00 3.85 4.00 4.00 0.00 0.00 2.27 4.35 2.70 0.00 3.45 1.92 5.26 2.00 1.85 5.08 8.33 0.00 3.70 1.69 0.00 0.00 0.00 K alternative_donor Ca-P60A,RI_chr2R_19820338_19820541,I_chr2R_19820338_19821424,CEI_chr2R_19820338_19821830,I_chr2R_19820338_19823289 chr2R - chr2R_19820338_19820955;chr2R_19820338_19820781;chr2R_19820338_19820765 chr2R_19820338_19820817 chr2R_19820238_19820337;chr2R_19820956_19820969 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.43 0.00 0.00 0.00 0.00 1.00 0.92 0.00 1.11 0.00 2.86 0.62 0.00 1.20 0.00 0.00 2.63 0.00 0.00 0.00 1.75 0.48 0.00 0.00 0.00 2.48 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 K intron_retention katanin-60 chr3R - chr3R_1055551_1055743 chr3R_1055550_1055551;chr3R_1055743_1055744 chr3R_1055429_1055550;chr3R_1055744_1056347 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 3.23 0.00 0.00 0.00 0.00 0.00 1.11 2.70 0.00 0.00 0.00 0.00 2.13 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.64 0.00 2.44 0.00 1.75 0.00 0.00 0.00 1.69 0.00 0.00 1.28 1.32 1.59 0.00 0.00 0.00 0.00 1.92 0.00 0.00 K jcn_only_AA RpS25,I_chr3R_7041333_7041414,I_chr3R_7041347_7041413,I_chr3R_7041347_7041556,RI_chr3R_7044164_7044221 chr3R - chr3R_7041333_7041414 chr3R_7041347_7041414 chr3R_7041415_7041483;chr3R_7041267_7041332 99.99 99.98 99.99 100.00 99.98 100.00 100.00 100.00 99.99 100.00 99.99 99.99 100.00 100.00 100.00 100.00 100.00 99.99 100.00 100.00 99.99 99.95 100.00 99.99 99.98 99.99 99.99 99.10 99.99 100.00 99.99 99.99 99.98 99.99 100.00 99.99 99.99 99.99 100.00 100.00 99.99 100.00 99.99 100.00 100.00 99.99 100.00 99.96 99.99 99.99 100.00 100.00 99.99 100.00 99.99 99.99 99.99 99.99 K alternative_donor CkIalpha,I_chrX_12548371_12549203,I_chrX_12548704_12549203,I_chrX_12548772_12549203 chrX + chrX_12548202_12549203;chrX_12548131_12549203 chrX_12547919_12549203 chrX_12549204_12549210;chrX_12547852_12547918 0.00 0.00 2.44 0.00 3.57 3.23 1.10 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 1.92 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7816,R_chr3R_25691122_25691551,RI_chr3R_25691122_25692883,RI_chr3R_25691122_25694436 chr3R - chr3R_25691122_25694254 chr3R_25691121_25691122;chr3R_25694254_25694255 chr3R_25691022_25691121;chr3R_25694255_25694363 2.50 0.00 2.94 3.30 0.00 4.00 1.55 4.17 3.80 4.00 3.51 3.54 0.00 4.17 3.17 2.70 3.70 3.12 1.56 1.95 2.00 1.85 4.21 3.12 1.54 0.00 3.57 5.00 0.00 0.00 1.23 8.82 6.25 0.00 4.65 0.00 0.00 4.08 0.00 10.00 0.00 1.68 0.00 3.45 0.00 6.33 0.00 13.33 0.98 1.69 2.50 0.00 5.56 3.03 1.52 0.00 1.18 10.42 K alternative_donor RpS9,RI_chr3L_9504402_9504499,I_chr3L_9504402_9504516 chr3L - chr3L_9504402_9504599 chr3L_9504402_9504499 chr3L_9504302_9504401;chr3L_9504600_9504616 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.41 0.00 0.10 0.00 0.29 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 K jcn_only_AD osa,I_chr3R_13542657_13542834,I_chr3R_13542657_13543500,I_chr3R_13542657_13543662,I_chr3R_13542657_13543668,I_chr3R_13543730_13543786 chr3R - chr3R_13542657_13543500;chr3R_13542657_13543662;chr3R_13542657_13542834;chr3R_13542657_13543668;chr3R_13542657_13543677 chr3R_13542657_13543968 chr3R_13542557_13542656;chr3R_13543969_13544017 14.55 18.99 10.59 23.19 12.68 23.73 16.90 15.69 14.55 23.53 6.52 19.77 19.17 14.14 13.48 14.15 19.67 14.81 17.00 16.50 20.48 16.07 19.66 20.24 20.90 20.55 28.42 12.99 13.56 18.90 11.76 8.33 4.70 12.02 8.45 18.26 27.52 12.50 25.56 11.21 10.53 13.77 12.31 11.81 7.69 8.16 12.12 9.48 16.67 16.28 16.08 13.70 5.17 37.04 12.96 15.79 10.00 11.63 K intron_retention Pcmt,I_chr3R_1379398_1379947 chr3R - chr3R_1379398_1379652 chr3R_1379397_1379398;chr3R_1379652_1379653 chr3R_1379298_1379397;chr3R_1379653_1379789 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 1.01 1.13 0.00 0.00 0.94 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.90 1.03 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.35 0.78 0.33 0.00 0.40 0.00 0.00 0.00 1.35 0.38 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 K intron_retention Ho,I_chr3R_7505682_7505805,I_chr3R_7506312_7506381 chr3R + chr3R_7505750_7505805 chr3R_7505749_7505750;chr3R_7505805_7505806 chr3R_7505526_7505749;chr3R_7505806_7505905 0.00 0.00 0.00 1.47 0.00 0.00 0.00 1.39 0.00 NA 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 2.44 2.86 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 1.59 K intron_retention CG11307 chr3L + chr3L_21612718_21612773 chr3L_21612717_21612718;chr3L_21612773_21612774 chr3L_21612325_21612717;chr3L_21612774_21612973 7.18 NA NA 13.64 NA NA 14.29 NA 0.00 NA NA 7.69 NA NA NA 30.77 NA NA NA 5.00 NA NA NA NA NA NA 25.00 NA NA NA NA NA NA 6.67 NA NA NA NA 0.00 NA NA 11.76 NA NA NA 30.77 0.00 NA NA 0.00 NA NA NA NA NA NA NA 6.67 K intron_retention I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,I_chr3R_17183927_17185306,I_chr3R_17184319_17185084,I_chr3R_17184319_17185284,noncoding_18168,RI_chr3R_17184792_17185306,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,RI_chr3R_17189607_17189988,I_chr3R_17190098_17190207,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17184792_17200781 chr3R_17184791_17184792;chr3R_17200781_17200782 chr3R_17184692_17184791;chr3R_17200782_17200881 11.14 5.56 13.64 NA NA 10.53 10.53 31.82 10.34 NA NA 21.74 NA 14.29 NA 12.50 NA NA 15.00 14.71 NA NA 7.14 7.69 NA 14.29 NA NA NA 7.69 25.00 0.00 5.56 11.76 NA NA NA NA 0.00 15.15 NA 28.57 6.67 NA 0.00 15.00 5.26 8.33 20.00 14.29 8.33 12.50 NA 9.09 13.33 NA NA 0.00 N alternative_donor CG9646 chr2R + chr2R_12936500_12937513 chr2R_12936933_12937513 chr2R_12937514_12937680;chr2R_12936416_12936499 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 78.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD PhKgamma,I_chrX_11589428_11589856,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11589297_11589856;chrX_11589428_11589856;chrX_11589313_11589856 chrX_11589418_11589856 chrX_11589857_11589956;chrX_11589195_11589296 14.81 18.18 19.05 14.81 NA NA NA 28.57 20.69 NA NA 29.03 NA NA 12.00 0.00 NA NA NA 3.23 NA 12.50 14.81 8.00 NA 14.29 NA NA 4.35 NA 14.81 NA NA 27.27 NA NA 30.00 11.54 13.04 12.82 NA 18.18 NA 16.22 15.00 NA NA 12.50 14.29 12.00 21.05 27.27 NA NA 21.74 NA 14.29 10.00 K intron_retention CG12768,I_chr3L_22903673_22904689,CEF_chr3L_22903677_22904938,I_chr3L_22913779_22916461 chr3L + chr3L_22903673_22904933 chr3L_22903672_22903673;chr3L_22904933_22904934 chr3L_22903665_22903672;chr3L_22904934_22905333 42.86 NA NA 54.55 NA 45.45 NA 60.00 41.67 NA NA 42.86 54.55 35.71 61.54 25.00 NA 45.45 NA 51.72 NA 70.00 30.00 40.00 54.55 NA 47.06 NA 53.33 NA 42.86 NA 46.15 50.00 53.85 47.06 36.36 30.77 36.84 29.03 NA 47.62 63.64 46.67 50.00 35.29 23.53 55.56 50.00 16.67 29.17 26.67 19.05 30.77 25.00 31.58 24.32 39.13 N cassette CG31216 chr3R + chr3R_15513020_15522273 chr3R_15513020_15513900;chr3R_15514088_15522273 chr3R_15513901_15514087 chr3R_15512852_15513019;chr3R_15522274_15522378 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention lin chr2R + chr2R_4802505_4802569 chr2R_4802504_4802505;chr2R_4802569_4802570 chr2R_4802033_4802504;chr2R_4802570_4805741 67.95 NA NA NA NA NA NA NA NA NA NA 63.64 NA NA NA NA NA NA NA 53.33 NA 69.23 58.82 63.64 69.23 NA 43.75 69.23 69.23 70.00 NA NA NA NA NA 90.00 45.45 NA 66.67 80.00 NA 63.64 NA NA NA NA NA NA NA NA 69.23 NA NA NA NA NA NA NA K intron_retention EI_chr2L_13164741_13164824,Sfmbt chr2L - chr2L_13170785_13171381 chr2L_13170784_13170785;chr2L_13171381_13171382 chr2L_13169657_13170784;chr2L_13171382_13171665 22.58 23.08 21.21 28.89 23.08 13.33 26.83 28.57 18.64 13.51 23.53 19.61 21.74 29.17 19.35 27.59 14.29 7.69 33.33 25.00 20.83 5.26 23.53 21.28 12.90 16.67 19.15 12.20 17.95 23.08 22.73 24.14 32.14 23.08 22.58 26.47 11.94 28.12 12.50 36.17 17.65 18.75 17.24 25.00 23.53 29.17 38.46 20.69 18.37 18.52 22.92 20.69 32.43 24.14 11.11 18.75 34.38 34.78 K cassette CG32944,I_chr3R_237955_238602,I_chr3R_238290_238602 chr3R - chr3R_233963_238962 chr3R_233963_238602;chr3R_238729_238962 chr3R_238603_238728 chr3R_233821_233962;chr3R_238963_238983 62.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 62.50 NA NA NA NA NA NA NA K alternative_acceptor Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046104;chr3L_16045251_16046129;chr3L_16045251_16046108;chr3L_16045251_16046111 chr3L_16045251_16045854 chr3L_16045216_16045250;chr3L_16046130_16046204 35.14 32.00 36.36 22.45 35.29 30.77 36.17 29.17 36.36 52.63 57.14 32.00 39.47 30.00 29.73 42.55 29.03 50.00 26.09 39.34 50.00 33.33 35.14 42.86 44.44 29.03 35.71 59.26 34.62 30.95 33.33 22.22 36.23 32.73 31.25 47.83 45.45 42.11 44.44 36.54 25.00 35.09 33.33 40.74 28.57 33.33 33.33 33.33 28.33 41.67 41.38 50.00 50.00 37.50 31.71 30.77 55.56 22.00 K intron_retention trio,CE_chr3L_998271_998363,CE_chr3L_998382_998879,I_chr3L_999683_1009321 chr3L - chr3L_998292_998350 chr3L_998291_998292;chr3L_998350_998351 chr3L_998282_998291;chr3L_998351_998381 0.00 0.00 0.00 0.37 0.00 0.00 1.10 0.00 0.00 0.00 0.00 1.12 0.00 0.00 1.24 0.00 0.00 0.00 0.70 0.77 0.00 0.00 0.25 0.00 0.00 0.72 0.41 4.02 7.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.86 1.49 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon Idh,I_chr3L_8351006_8351949,I_chr3L_8351036_8351655 chr3L - chr3L_8351006_8353892,chr3L_8351036_8353892 chr3L_8351816_8353892 chr3L_8349105_8351005 chr3L_8351656_8351815 chr3L_8353893_8353937 0.97 1.74 0.52 2.99 0.88 0.90 0.47 1.76 1.53 1.52 1.27 0.43 0.00 0.00 1.18 1.00 0.70 2.33 0.79 1.29 0.83 1.83 1.69 0.91 2.24 1.39 2.02 1.52 1.68 0.51 0.00 1.38 0.55 0.87 1.10 0.62 2.28 1.40 2.84 1.84 0.44 1.01 0.00 0.51 1.60 1.40 0.37 0.75 0.37 0.91 0.67 0.48 0.97 0.97 0.71 0.40 1.24 0.30 K jcn_only_AD Aldolase,I_chr3R_22083764_22086684,I_chr3R_22086804_22086875 chr3R - chr3R_22083764_22086875;chr3R_22083764_22086879 chr3R_22083764_22087057 chr3R_22083664_22083763;chr3R_22087058_22087313 99.33 99.56 99.56 98.92 99.52 98.92 99.63 99.17 99.44 99.39 98.33 99.33 99.30 99.46 99.35 100.00 98.88 99.57 98.88 99.38 99.28 99.84 99.24 99.07 99.12 99.51 99.09 99.34 99.14 99.15 99.15 98.98 99.76 99.36 98.59 98.43 99.48 99.84 99.63 98.84 99.34 99.03 99.37 100.00 99.76 99.50 99.71 99.16 99.12 98.80 99.50 99.78 97.45 97.40 99.65 99.05 98.86 99.13 K cassette Pep,I_chr3L_17637180_17637918 chr3L - chr3L_17636827_17637990 chr3L_17636827_17637078;chr3L_17637180_17637990 chr3L_17637079_17637179 chr3L_17636463_17636826;chr3L_17637991_17638018 4.94 5.52 4.67 43.39 4.26 1.53 1.03 10.94 5.99 3.37 3.37 15.94 5.00 4.63 3.85 4.03 6.48 1.46 5.42 3.93 0.94 4.61 5.71 6.91 5.00 8.62 5.24 16.02 2.34 5.71 5.03 6.71 7.69 5.25 2.93 4.39 3.50 3.80 3.69 4.62 7.25 5.80 5.07 5.46 8.33 5.72 4.24 6.70 3.92 11.72 3.55 5.10 3.39 3.02 4.35 4.94 4.26 3.86 K alternative_donor CG32016,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_978516_978914;chr4_978516_978612 chr4_978516_978631 chr4_978478_978515;chr4_978915_978920 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K intron_retention CG42360,RI_chr2R_20495045_20495115,CG42361,RI_chr2R_20497443_20497538 chr2R + chr2R_20495045_20496457 chr2R_20495044_20495045;chr2R_20496457_20496458 chr2R_20494945_20495044;chr2R_20496458_20496559 0.00 NA NA NA NA NA 0.00 10.53 3.45 NA NA 10.53 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 5.56 NA 0.00 7.14 NA NA 0.00 NA NA NA K cassette CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_155591_155927,I_chr4_157794_157864 chr4 + chr4_154340_157504 chr4_154340_155497;chr4_155591_157504 chr4_155498_155590 chr4_154254_154339;chr4_157505_157604 100.00 100.00 90.91 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 91.67 100.00 NA NA NA 94.12 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 K alternative_acceptor Mef2,I_chr2R_5806138_5806216,I_chr2R_5806354_5806933,CREFI_chr2R_5809509_5845628,I_chr2R_5814375_5816404,RI_chr2R_5846889_5846948 chr2R - chr2R_5806138_5806216 chr2R_5806147_5806216 chr2R_5806217_5806316;chr2R_5806038_5806137 100.00 NA NA 93.33 NA NA NA 100.00 92.31 100.00 NA 100.00 NA NA 100.00 NA NA 100.00 NA 93.75 NA 100.00 100.00 100.00 NA NA NA NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 92.31 100.00 100.00 95.00 87.50 100.00 NA 100.00 100.00 100.00 NA 95.00 100.00 NA 100.00 NA 94.12 NA NA NA NA 94.74 K intron_retention shi,RI_chrX_15786633_15786860,RE_chrX_15793108_15795563 chrX + chrX_15795950_15796010 chrX_15795949_15795950;chrX_15796010_15796011 chrX_15795856_15795949;chrX_15796011_15796150 0.00 0.00 0.00 0.62 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_716153_716322;chr4_716066_716322;chr4_715043_716322 chr4_715964_716322 chr4_716323_716675 0.00 NA NA 0.00 NA NA 0.00 0.00 3.64 NA NA 6.25 NA 4.35 NA 2.44 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 4.17 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA K intron_retention CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8184851_8185125 chr2L_8184850_8184851;chr2L_8185125_8185126 chr2L_8184815_8184850;chr2L_8185126_8185278 46.43 NA NA NA NA NA NA NA 70.00 NA NA NA NA NA NA 42.86 NA NA NA NA NA 22.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention dos,I_chr3L_2589746_2592161 chr3L + chr3L_2593500_2593560 chr3L_2593499_2593500;chr3L_2593560_2593561 chr3L_2593388_2593499;chr3L_2593561_2593801 0.00 1.23 0.00 2.44 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 2.60 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette I_chr3L_1494947_1496080,pUf68,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1500389_1501798;chr3L_1499338_1501798;chr3L_1499880_1501798 chr3L_1500389_1501350,chr3L_1499338_1501350,chr3L_1499880_1501350;chr3L_1501398_1501798 chr3L_1501351_1501397 chr3L_1499043_1499337;chr3L_1501799_1501892 5.13 2.90 3.77 1.37 2.00 3.51 0.00 2.86 2.20 7.14 14.29 6.38 19.44 5.56 6.49 2.90 3.77 2.17 4.00 6.67 11.76 1.96 6.90 6.67 5.13 1.30 9.84 4.17 6.25 6.82 7.32 3.92 7.69 2.11 4.00 2.70 6.15 3.51 8.96 6.80 6.98 3.81 3.85 11.11 1.82 5.80 6.00 5.38 2.91 5.88 8.97 6.00 2.27 5.88 4.48 7.27 1.96 4.23 K intron_retention kst,I_chr3L_3367008_3367514 chr3L + chr3L_3367008_3367514 chr3L_3367007_3367008;chr3L_3367514_3367515 chr3L_3366908_3367007;chr3L_3367515_3367614 94.12 87.88 100.00 89.66 100.00 94.12 96.67 92.31 96.67 88.89 92.31 89.47 100.00 96.88 96.30 96.77 94.74 94.12 91.30 100.00 100.00 87.50 91.18 92.59 100.00 87.50 100.00 90.00 83.33 94.12 94.44 88.89 100.00 92.31 100.00 88.89 96.43 94.74 96.30 100.00 86.67 97.67 91.30 95.83 90.00 92.86 95.24 70.00 97.56 95.65 90.62 92.31 100.00 94.12 96.15 90.91 100.00 90.00 K jcn_only_AD CD98hc,I_chr3R_3802791_3802855 chr3R - chr3R_3800588_3800858 chr3R_3800588_3800775 chr3R_3800140_3800587 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG4300 chr3L - chr3L_12266721_12269989 chr3L_12266721_12267102;chr3L_12267212_12269989 chr3L_12267103_12267211 chr3L_12266598_12266720;chr3L_12269990_12270349 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 96.55 100.00 96.55 100.00 100.00 100.00 100.00 100.00 95.65 98.72 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 96.77 100.00 100.00 100.00 100.00 100.00 100.00 98.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG30381,RI_chr2R_3817895_3817951,RI_chr2R_3819348_3819403 chr2R - chr2R_3817895_3817956 chr2R_3817894_3817895;chr2R_3817956_3817957 chr2R_3817795_3817894;chr2R_3817957_3818051 5.56 0.00 NA 16.67 14.29 NA NA NA 5.56 NA NA 9.09 6.67 NA 0.00 NA NA 0.00 0.00 20.00 NA 5.26 22.22 0.00 NA NA 29.41 NA NA NA NA NA NA 10.53 NA NA 7.14 0.00 NA 0.00 NA 0.00 NA NA 14.29 0.00 5.88 NA 0.00 25.00 0.00 NA NA 0.00 NA NA 10.53 NA K mutually_exclusive CG11247,I_chr3L_21718596_21718659 chr3L - chr3L_21719051_21721386,chr3L_21721493_21721550 chr3L_21719051_21719262,chr3L_21720038_21721550 chr3L_21721387_21721492 chr3L_21719263_21720037 chr3L_21718941_21719050;chr3L_21721551_21721574 100.00 83.33 50.00 66.67 60.00 100.00 100.00 83.33 100.00 NA 66.67 90.00 60.00 100.00 100.00 100.00 100.00 NA 100.00 90.91 80.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 66.67 100.00 85.71 100.00 75.00 100.00 100.00 75.00 83.33 100.00 100.00 62.50 75.00 75.00 66.67 50.00 100.00 100.00 100.00 85.71 100.00 87.50 83.33 100.00 100.00 100.00 83.33 NA 100.00 87.50 K jcn_only_AA CG18624,RI_chrX_7787450_7787620,RI_chrX_7787450_7787687,RI_chrX_7787524_7787687 chrX - chrX_7787450_7787782 chrX_7787524_7787782 chrX_7787783_7787787;chrX_7787424_7787449 97.99 97.70 97.65 98.41 98.88 99.45 97.06 95.28 96.09 NA 97.54 96.63 94.40 97.01 99.16 97.00 99.29 97.99 98.45 95.48 98.68 NA 95.00 100.00 100.00 98.54 NA NA NA NA 98.60 97.30 100.00 97.79 NA NA NA 97.14 100.00 98.21 100.00 98.97 97.78 NA 94.53 100.00 96.15 100.00 98.39 NA 96.15 100.00 97.96 NA 97.75 100.00 98.48 90.00 K alternative_donor CG17912,I_chr2L_16748617_16749055,I_chr2L_16749189_16749266 chr2L + chr2L_16746617_16749055 chr2L_16748617_16749055 chr2L_16749056_16749155;chr2L_16746227_16746616 63.16 55.00 66.67 94.44 66.67 76.92 96.97 92.11 88.37 23.08 77.78 76.92 92.31 66.67 63.16 91.67 75.00 69.23 81.82 75.00 66.67 37.04 48.65 34.48 50.00 90.91 57.14 28.57 26.32 58.82 81.82 45.45 58.82 86.84 62.50 55.56 26.67 33.33 24.14 41.67 40.00 78.12 92.31 47.83 41.67 90.91 36.84 68.00 83.33 42.86 54.17 68.75 30.77 55.56 78.95 63.64 53.85 58.82 K alternative_donor debcl,I_chr2R_2539027_2539493 chr2R + chr2R_2539636_2539692 chr2R_2539638_2539692 chr2R_2539693_2540353;chr2R_2539494_2539635 92.73 86.05 96.15 91.89 96.00 94.44 90.91 95.00 93.55 89.47 90.91 98.51 95.45 96.00 90.91 96.55 96.00 97.30 87.88 95.70 91.67 89.92 93.85 93.44 97.14 100.00 93.02 90.48 89.83 88.89 88.71 91.23 94.44 91.30 92.45 89.36 94.52 97.22 91.55 89.33 95.71 97.47 83.87 97.37 92.78 93.07 98.25 95.05 88.31 88.68 92.73 96.55 86.79 87.50 88.37 92.73 89.87 90.08 K intron_retention RI_chrX_788339_821889,CG3711 chrX - chrX_817585_817637 chrX_817584_817585;chrX_817637_817638 chrX_817343_817584;chrX_817638_817756 0.00 0.00 NA NA NA NA NA NA 12.00 NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA 7.14 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA NA NA K jcn_only_AA gw,I_chr4_679135_681671 chr4 - chr4_673205_673271 chr4_673211_673271 chr4_673272_673459;chr4_672931_673204 95.85 94.05 94.87 94.24 93.42 100.00 96.94 95.94 93.13 93.48 96.30 96.55 96.08 94.37 97.53 95.77 96.36 97.37 100.00 95.85 92.73 96.72 93.37 95.00 90.77 92.08 97.70 98.21 96.36 96.49 95.54 97.06 97.83 95.16 96.30 92.66 97.92 92.50 96.43 92.70 95.74 94.47 97.59 90.00 98.44 93.20 93.18 95.56 95.75 97.94 97.39 91.86 96.25 90.67 96.50 95.24 95.97 96.43 K intron_retention scny,I_chr3L_5763034_5768288 chr3L + chr3L_5764555_5764717 chr3L_5764554_5764555;chr3L_5764717_5764718 chr3L_5764486_5764554;chr3L_5764718_5764893 100.00 100.00 100.00 100.00 NA 87.50 100.00 91.67 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 90.91 NA 100.00 100.00 NA NA 100.00 100.00 100.00 95.00 NA 100.00 100.00 93.75 90.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 88.89 NA N jcn_only_AD kat80,I_chrX_16162233_16162306,I_chrX_16168725_16169287 chrX - chrX_16168725_16169347;chrX_16168725_16169565 chrX_16168725_16169287 chrX_16168625_16168724;chrX_16169566_16169786 7.04 8.33 6.82 5.80 3.03 9.09 6.67 5.26 6.32 0.00 2.94 6.85 13.64 9.76 11.90 3.08 8.11 5.41 10.00 7.23 7.69 10.00 6.25 1.96 8.33 5.56 0.00 3.12 0.00 7.32 21.21 NA NA 11.63 10.00 5.56 0.00 0.00 10.34 8.33 NA 12.82 12.00 14.89 NA 7.41 17.14 30.43 19.23 10.64 5.49 2.63 0.00 10.00 3.70 3.57 5.41 NA K alternative_donor None chrU - chrU_4029374_4029432;chrU_4029374_4029489 chrU_4029374_4029436 0.00 1.03 0.00 0.00 0.89 0.00 0.00 0.00 0.37 0.00 0.00 0.58 0.00 0.00 0.00 0.00 1.08 1.12 0.00 0.47 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.77 0.00 0.00 0.50 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.51 K intron_retention Myo31DF,I_chr2L_10506249_10506683,I_chr2L_10506446_10506542 chr2L - chr2L_10495105_10496628 chr2L_10495104_10495105;chr2L_10496628_10496629 chr2L_10494879_10495104;chr2L_10496629_10496848 0.00 0.63 0.00 0.63 0.00 0.00 0.00 1.09 0.67 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 1.01 0.80 0.00 0.00 2.05 1.11 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.78 0.00 0.97 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.60 0.00 0.00 1.57 1.05 0.00 0.00 0.00 0.00 1.57 2.29 0.00 K alternative_acceptor Csl4,I_chr2L_11123252_11123311,RI_chr2L_11130039_11130111 chr2L - chr2L_11123252_11123311 chr2L_11123258_11123311 chr2L_11123312_11123411;chr2L_11123152_11123251 100.00 90.48 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 93.33 94.12 100.00 100.00 93.75 96.43 100.00 94.74 100.00 97.87 100.00 93.33 96.30 100.00 100.00 100.00 95.00 96.30 92.86 94.12 93.75 100.00 100.00 95.45 100.00 100.00 100.00 95.65 100.00 96.15 92.86 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 96.15 97.83 94.44 K alternative_donor elm chr3R - chr3R_1478257_1478930 chr3R_1478257_1478926 chr3R_1478103_1478256;chr3R_1478931_1479476 100.00 100.00 100.00 100.00 100.00 100.00 99.06 100.00 99.40 100.00 100.00 100.00 100.00 100.00 98.68 100.00 98.33 98.31 100.00 100.00 98.15 100.00 98.41 100.00 100.00 100.00 100.00 97.78 100.00 100.00 98.63 97.78 100.00 99.12 97.22 100.00 100.00 100.00 100.00 98.77 100.00 99.31 100.00 98.57 98.08 98.63 100.00 100.00 99.29 98.51 100.00 100.00 100.00 97.06 100.00 100.00 98.67 98.73 K alternative_acceptor endos,I_chr3L_14024099_14024488,I_chr3L_14024103_14024158,I_chr3L_14024103_14024546,noncoding_12505,I_chr3L_14024496_14024546 chr3L - chr3L_14024103_14024488 chr3L_14024158_14024488 chr3L_14024489_14024495;chr3L_14024003_14024102 7.43 7.83 5.50 7.43 7.14 5.94 6.20 4.49 5.22 8.25 4.76 13.89 4.76 2.94 4.97 4.88 5.31 4.35 4.48 5.48 3.48 15.56 9.18 8.27 10.53 9.49 2.21 7.78 14.55 8.16 5.15 9.30 10.64 3.77 3.80 17.65 10.10 11.69 6.60 7.73 11.11 4.50 3.00 9.47 10.67 7.47 6.59 10.30 4.29 6.96 6.59 9.46 10.26 14.29 5.26 7.62 8.55 8.84 K intron_retention CG6656,RI_chr3R_17702199_17702274,CG33092 chr3R + chr3R_17702199_17702296 chr3R_17702198_17702199;chr3R_17702296_17702297 chr3R_17702099_17702198;chr3R_17702297_17702306 13.04 19.05 11.11 6.67 20.00 19.05 30.43 15.00 11.39 9.52 NA 11.76 NA 12.50 17.65 23.53 30.00 14.81 5.88 11.90 17.65 13.21 10.81 11.11 26.32 NA 13.64 14.29 25.00 12.00 48.15 20.83 7.89 10.81 10.71 41.67 8.33 NA 4.35 20.00 33.33 13.04 14.29 14.29 18.18 11.36 10.20 34.62 7.55 10.42 11.11 22.22 6.78 6.45 12.50 20.00 7.14 13.04 K intron_retention fry,I_chr3L_9636648_9656042 chr3L - chr3L_9653906_9656042 chr3L_9653905_9653906;chr3L_9656042_9656043 chr3L_9653742_9653905;chr3L_9656043_9656142 4.44 5.77 3.23 6.25 5.26 3.70 8.93 4.44 4.88 5.00 0.00 4.17 4.17 4.00 7.69 2.91 5.00 4.26 3.57 4.00 5.26 7.41 7.14 5.00 4.44 2.17 9.26 10.71 3.57 2.44 3.16 2.56 6.25 5.13 4.44 0.00 2.78 2.27 2.22 2.65 0.00 5.34 5.13 3.08 10.26 5.77 8.11 2.99 3.09 28.00 8.24 5.00 2.56 12.50 2.90 0.00 11.43 4.48 K intron_retention cul-2,RI_chr2L_21657668_21657832,noncoding_4226,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21657742_21657832 chr2L_21657741_21657742;chr2L_21657832_21657833 chr2L_21657690_21657741;chr2L_21657833_21657932 51.85 43.48 45.45 43.14 40.00 53.33 85.92 61.90 55.00 50.00 50.00 55.00 54.55 50.00 51.85 45.00 60.87 40.00 58.62 30.77 42.86 77.78 72.00 65.00 76.19 34.62 78.57 93.94 76.92 71.43 46.34 20.69 50.00 46.15 66.67 41.86 71.43 63.64 50.00 52.94 71.43 52.50 44.00 85.00 50.00 48.28 42.86 53.85 52.08 50.00 66.67 68.42 43.75 45.45 29.03 34.78 51.85 29.17 K alternative_donor CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907784_9908424;chr2L_9907784_9908531;chr2L_9907784_9908307 chr2L_9907784_9908405 chr2L_9907756_9907783;chr2L_9908532_9908619 6.19 1.89 6.82 8.33 3.85 6.25 5.71 6.58 4.80 4.55 4.00 9.68 15.38 4.55 4.55 6.17 4.55 10.00 8.93 6.43 3.33 1.57 5.05 3.08 7.41 6.82 8.33 7.41 6.94 5.95 3.33 2.94 5.80 6.52 4.55 4.85 5.63 6.98 8.20 6.19 6.82 6.59 14.63 8.97 7.89 9.21 4.48 7.94 8.43 4.55 7.41 2.56 3.85 4.35 4.84 12.00 8.62 6.06 K intron_retention I_chr3L_16086347_16086804,CG5389 chr3L + chr3L_16091493_16091648 chr3L_16091492_16091493;chr3L_16091648_16091649 chr3L_16091098_16091492;chr3L_16091649_16091973 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 96.77 NA 100.00 96.15 100.00 100.00 100.00 95.24 100.00 100.00 100.00 96.30 100.00 90.00 100.00 100.00 100.00 100.00 93.33 NA 100.00 100.00 100.00 NA NA 96.67 100.00 100.00 92.86 100.00 90.91 94.74 NA 100.00 92.31 100.00 NA 83.33 100.00 NA 100.00 94.12 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA K alternative_acceptor I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545615_17545855 chr2R_17545615_17545850 chr2R_17545613_17545614;chr2R_17545856_17545985 68.38 76.47 70.97 58.70 68.57 57.50 70.00 72.73 77.78 NA 66.67 62.22 75.00 62.50 67.35 55.56 70.97 51.43 74.19 68.18 59.26 NA NA NA NA 65.38 NA NA NA NA 67.86 80.00 72.73 67.35 NA NA 100.00 NA 75.00 NA NA 64.44 63.33 NA 68.57 87.50 88.89 NA 63.83 NA NA NA 77.78 NA 58.33 NA 77.78 64.29 K intron_retention Oatp74D,I_chr3L_17500359_17500724 chr3L + chr3L_17503876_17504013 chr3L_17503875_17503876;chr3L_17504013_17504014 chr3L_17503699_17503875;chr3L_17504014_17504761 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.95 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG3662,I_chr2L_822032_822857 chr2L + chr2L_824138_824218 chr2L_824138_824190 chr2L_823637_824137;chr2L_824219_824354 22.97 NA 28.12 NA NA 13.64 24.44 25.00 25.00 NA NA 26.19 16.67 24.14 20.00 21.43 NA NA 15.62 15.69 39.13 43.59 NA 27.59 NA NA 20.59 3.70 27.27 NA 23.26 12.50 NA 17.95 29.63 NA NA NA 24.14 28.57 23.08 26.19 50.00 33.33 22.22 10.71 32.26 NA 22.86 20.00 22.73 NA NA 20.00 21.21 13.64 NA 17.65 K intron_retention CG14764 chr2R - chr2R_3830394_3835109 chr2R_3830393_3830394;chr2R_3835109_3835110 chr2R_3829590_3830393;chr2R_3835110_3836025 18.52 20.93 9.76 50.00 12.50 16.13 20.00 17.95 28.00 67.86 40.00 28.09 20.00 12.90 22.22 10.26 18.52 63.16 12.12 8.11 40.91 41.67 20.27 15.00 20.83 11.76 18.75 60.71 33.33 24.32 12.12 17.86 24.14 16.95 14.63 24.24 18.06 19.61 19.05 10.14 10.81 25.42 23.08 11.54 18.92 9.80 8.62 18.52 8.00 23.40 14.49 22.22 6.06 6.38 10.53 5.17 11.11 0.00 K intron_retention CG14657 chr3R - chr3R_645633_646054 chr3R_645632_645633;chr3R_646054_646055 chr3R_645516_645632;chr3R_646055_647174 0.00 4.35 0.00 0.00 4.76 NA 13.64 3.03 8.51 NA 0.00 4.65 NA 9.09 0.00 0.00 7.69 3.70 6.25 6.25 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 4.35 NA 14.29 0.00 8.00 0.00 3.45 0.00 0.00 10.71 0.00 2.38 13.33 0.00 NA 0.00 0.00 NA 9.09 7.14 6.25 0.00 0.00 0.00 0.00 0.00 0.00 NA K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2816013 chr2R_2813804_2813977;chr2R_2814097_2814174;chr2R_2814327_2814894;chr2R_2815654_2816013 chr2R_2813978_2814096;chr2R_2814175_2814326;chr2R_2814895_2815653 chr2R_2813704_2813803;chr2R_2816014_2816113 83.33 60.00 100.00 55.56 66.67 100.00 100.00 66.67 100.00 100.00 66.67 100.00 50.00 100.00 80.00 100.00 100.00 100.00 60.00 87.50 66.67 83.33 80.00 100.00 75.00 66.67 80.00 66.67 75.00 83.33 100.00 100.00 66.67 83.33 100.00 66.67 85.71 83.33 66.67 83.33 80.00 100.00 100.00 75.00 70.00 85.71 57.14 80.00 85.71 100.00 83.33 60.00 100.00 85.71 75.00 88.89 100.00 83.33 K intron_retention gish chr3R + chr3R_12100604_12100709 chr3R_12100603_12100604;chr3R_12100709_12100710 chr3R_12100535_12100603;chr3R_12100710_12100891 100.00 100.00 100.00 99.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.88 100.00 100.00 100.00 100.00 100.00 99.50 100.00 100.00 100.00 100.00 100.00 100.00 99.27 99.12 100.00 99.57 100.00 100.00 100.00 99.42 100.00 100.00 100.00 100.00 100.00 98.63 100.00 100.00 99.14 99.01 100.00 99.37 98.89 99.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG10188 chr2L - chr2L_19508266_19508416;chr2L_19508266_19508351 chr2L_19508266_19508325 chr2L_19507490_19508265;chr2L_19508417_19508726 90.00 87.50 88.89 92.86 71.43 83.33 100.00 93.75 91.30 100.00 100.00 93.75 88.89 88.89 80.00 100.00 66.67 87.50 90.00 95.00 87.50 94.74 78.57 80.00 87.50 85.71 83.33 90.91 100.00 82.61 90.00 90.00 93.33 100.00 90.91 92.31 92.86 83.33 91.67 89.47 83.33 95.00 88.89 90.00 87.50 91.67 83.33 100.00 88.89 85.71 92.86 100.00 83.33 100.00 84.62 83.33 80.00 90.00 K intron_retention CG3558,RI_chr2L_2995071_2997790 chr2L + chr2L_2997060_2997790 chr2L_2997059_2997060;chr2L_2997790_2997791 chr2L_2996502_2997059;chr2L_2997791_2997890 3.14 2.65 3.39 3.94 0.00 4.49 4.96 3.87 3.12 6.25 2.08 4.05 6.12 7.04 5.51 6.48 2.50 4.35 5.88 4.76 0.76 3.39 4.55 1.89 2.70 0.00 5.67 3.77 0.00 2.42 6.67 0.00 2.25 3.14 3.85 2.99 2.87 1.52 4.19 6.25 0.00 5.19 2.60 3.96 3.77 3.51 2.44 0.00 2.06 0.99 2.94 3.23 0.00 2.75 4.90 0.83 2.70 2.99 K alternative_acceptor mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818575_7818853;chr3R_7818607_7818853 chr3R_7818597_7818853 chr3R_7818854_7818892;chr3R_7818507_7818574 34.38 34.38 30.56 34.21 43.75 22.58 20.29 33.82 18.82 35.29 40.00 42.47 41.30 48.72 26.19 25.49 20.00 25.00 28.57 30.67 43.18 40.00 25.00 34.78 35.00 41.38 43.75 25.81 35.29 26.92 33.33 28.57 22.58 35.29 36.84 45.83 22.73 22.22 38.46 48.89 23.08 24.32 30.00 41.38 35.29 39.02 39.13 16.67 40.24 15.15 35.56 41.67 35.71 22.22 41.46 39.29 15.62 25.71 K intron_retention Aats-val chr2R + chr2R_9089533_9089596 chr2R_9089532_9089533;chr2R_9089596_9089597 chr2R_9088503_9089532;chr2R_9089597_9090217 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 1.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10874 chr2L - chr2L_2191079_2191849 chr2L_2191078_2191079;chr2L_2191849_2191850 chr2L_2190787_2191078;chr2L_2191850_2192090 2.50 4.35 2.50 3.51 0.00 6.67 5.36 0.00 7.14 0.00 0.00 3.51 3.85 6.06 2.44 0.00 0.00 0.00 6.25 2.29 0.00 5.80 3.39 5.77 0.00 2.56 6.25 16.36 5.88 0.00 0.00 0.85 0.00 0.00 0.00 1.89 3.85 4.88 3.57 2.03 1.49 2.53 0.00 0.00 2.86 3.20 0.00 1.94 5.13 5.00 8.57 5.00 0.00 2.56 0.00 2.17 2.78 1.20 K jcn_only_AD Ssadh,I_chr3R_21451887_21452065,RI_chr3R_21451890_21451963,I_chr3R_21452371_21452464,I_chr3R_21452407_21452453 chr3R - chr3R_21451890_21452065 chr3R_21451890_21451963 chr3R_21451790_21451889;chr3R_21452066_21452165 0.00 0.00 6.25 0.00 0.00 5.41 2.13 0.00 1.37 0.00 0.00 0.00 0.00 7.14 0.00 0.00 8.00 0.00 0.00 1.08 0.00 3.03 1.67 0.00 2.17 0.00 0.00 0.00 0.00 0.00 9.68 4.35 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 1.39 0.00 2.70 3.23 0.00 0.00 0.00 1.39 2.44 1.49 0.00 0.00 2.04 3.12 0.00 0.00 3.33 K alternative_donor CG12703 chrX + chrX_19645123_19645380;chrX_19645200_19645380;chrX_19645202_19645380;chrX_19645171_19645380;chrX_19644924_19645380 chrX_19645198_19645380 chrX_19645381_19645579;chrX_19644833_19644923 1.52 1.59 3.45 1.16 1.75 2.94 2.13 2.46 0.58 2.00 1.59 3.45 2.13 1.39 1.25 1.03 1.59 1.27 1.47 1.94 1.52 1.39 0.97 0.00 2.04 0.00 1.54 2.50 3.77 1.06 2.30 3.70 0.76 0.82 1.39 1.67 0.00 1.59 0.00 1.63 1.52 2.50 1.54 2.38 4.05 1.09 0.00 1.41 1.27 1.69 0.00 0.00 0.00 0.00 1.15 1.39 1.43 3.57 K jcn_only_AD Sug,noncoding_12057 chr3L + chr3L_11681439_11682207 chr3L_11681445_11682207 chr3L_11682208_11683255;chr3L_11681252_11681438 2.13 0.00 5.26 1.67 3.57 4.35 1.56 0.00 2.86 1.75 0.00 2.78 11.11 5.26 3.57 2.67 2.70 0.00 1.75 2.67 4.26 2.08 3.85 6.25 2.00 0.00 2.44 2.08 0.00 0.00 4.35 0.00 4.00 0.00 0.00 0.00 2.44 2.44 4.08 1.30 0.00 0.00 2.13 3.61 3.92 2.90 4.82 2.17 3.49 0.00 0.00 3.12 2.00 1.43 0.00 1.89 3.12 0.00 K intron_retention CG8620,RI_chr3L_7151615_7151666 chr3L + chr3L_7151615_7151678 chr3L_7151614_7151615;chr3L_7151678_7151679 chr3L_7151515_7151614;chr3L_7151679_7151766 81.36 71.43 76.92 91.26 78.57 84.00 81.36 94.87 76.92 63.64 75.00 85.19 89.47 96.43 80.00 92.31 84.21 80.95 86.36 92.16 94.44 90.18 80.56 80.00 80.56 85.19 85.71 84.11 91.67 72.00 83.33 81.48 81.25 90.32 76.19 92.68 64.10 57.69 79.55 59.46 85.11 75.41 83.33 83.33 84.44 78.05 71.88 96.30 84.62 74.07 80.00 57.14 72.22 78.57 92.31 78.38 66.67 81.82 K intron_retention Csk,I_chr3R_7463337_7463512,I_chr3R_7468928_7472509 chr3R - chr3R_7461967_7462023 chr3R_7461966_7461967;chr3R_7462023_7462024 chr3R_7461898_7461966;chr3R_7462024_7462126 0.67 0.83 1.13 2.25 0.00 1.43 0.00 2.23 0.58 0.00 0.00 0.64 1.10 0.00 0.00 0.00 0.00 0.66 0.00 0.80 1.68 3.49 1.18 1.59 0.61 1.16 3.78 3.09 1.31 1.19 0.00 0.00 2.30 1.31 0.00 0.67 0.93 0.84 0.83 0.55 0.00 1.22 2.31 0.66 2.26 0.50 0.38 0.78 2.01 0.00 0.84 0.47 0.00 0.00 1.81 0.00 0.00 0.00 K cassette HLH106,RI_chr3L_19787260_19787323 chr3L + chr3L_19787260_19788001 chr3L_19787260_19787663;chr3L_19787800_19788001 chr3L_19787664_19787799 chr3L_19787254_19787259;chr3L_19788002_19789492 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon CG1407,RI_chr2R_5918952_5919093 chr2R - chr2R_5916563_5918589 chr2R_5917764_5918589 chr2R_5915948_5916562 chr2R_5916731_5917763 chr2R_5918590_5918719 80.00 81.88 81.82 79.92 82.86 81.58 68.66 75.29 76.38 91.11 82.18 81.79 81.16 69.92 82.61 85.50 77.36 75.68 73.43 73.35 80.00 83.22 80.28 82.29 78.57 73.53 80.00 87.80 82.29 81.95 77.27 78.05 78.51 75.32 79.25 83.20 87.78 85.40 86.24 83.89 74.07 79.12 77.98 78.67 76.43 77.11 76.62 76.76 76.12 82.58 79.44 80.36 80.16 80.42 76.47 80.00 81.54 74.33 K alternative_acceptor Gel,I_chr3R_63540_64006,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_63540_64024;chr3R_63540_63897 chr3R_63540_64006 chr3R_63440_63539;chr3R_64025_64099 0.00 0.22 0.00 0.17 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.13 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 K alternative_last_exon CG32579,RI_chrX_16218635_16218688,I_chrX_16218930_16219644 chrX + chrX_16218635_16218688;chrX_16218635_16219644 chrX_16218635_16218709 chrX_16219645_16220700 chrX_16218710_16219210 chrX_16218535_16218634 31.34 26.23 28.33 30.99 31.25 33.90 48.61 40.96 31.62 25.93 35.42 36.04 54.72 33.96 37.50 31.34 31.91 32.76 38.46 36.60 29.41 26.55 24.24 31.52 29.41 36.96 32.47 34.15 25.00 26.44 24.14 31.25 20.90 34.44 30.77 24.64 19.82 21.74 25.23 30.09 42.62 26.61 33.33 30.77 32.94 34.69 37.88 22.02 29.46 48.15 24.73 33.96 25.00 32.26 38.36 27.78 33.85 26.26 K multi_cassette Vha100-1,I_chr3R_24958227_24960770,RI_chr3R_24959152_24959582,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24958227_24960770 chr3R_24958227_24958993;chr3R_24959152_24959582;chr3R_24959684_24960278;chr3R_24960321_24960770 chr3R_24958994_24959151;chr3R_24959583_24959683;chr3R_24960279_24960320 chr3R_24958127_24958226;chr3R_24960771_24960870 33.33 42.86 NA 50.00 NA 33.33 42.86 50.00 50.00 NA NA 94.74 NA 66.67 50.00 33.33 NA 50.00 NA 55.56 66.67 11.11 40.00 33.33 22.22 50.00 18.18 NA 27.27 16.67 20.83 33.33 25.00 42.86 33.33 50.00 31.25 28.57 30.77 14.29 28.57 36.36 NA 33.33 42.86 33.33 25.00 NA 50.00 22.22 30.77 25.00 40.00 NA 66.67 42.86 42.86 NA K intron_retention CG13893,I_chr3L_600913_601954 chr3L - chr3L_600771_600842 chr3L_600770_600771;chr3L_600842_600843 chr3L_600729_600770;chr3L_600843_600912 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1041,I_chr3R_2199103_2199426 chr3R - chr3R_2198959_2199023 chr3R_2198958_2198959;chr3R_2199023_2199024 chr3R_2197892_2198958;chr3R_2199024_2199100 0.00 NA NA 15.38 NA NA NA 0.00 7.41 NA NA 13.33 NA NA NA 0.00 NA NA NA 0.00 NA 12.50 0.00 NA NA NA NA 7.69 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA 12.50 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA 0.00 0.00 K intron_retention I_chr2R_13433672_13433749,MESR4 chr2R + chr2R_13438570_13438629 chr2R_13438569_13438570;chr2R_13438629_13438630 chr2R_13436587_13438569;chr2R_13438630_13438896 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 97.18 100.00 96.77 98.41 96.55 96.67 100.00 100.00 97.06 100.00 100.00 97.56 100.00 100.00 98.28 97.44 100.00 100.00 97.73 97.50 100.00 100.00 97.06 100.00 98.51 98.25 100.00 100.00 100.00 100.00 100.00 98.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.00 98.57 96.00 98.08 100.00 100.00 100.00 100.00 91.67 100.00 96.55 K alternative_donor CG1578,RI_chrX_11709573_11709680,I_chrX_11709573_11710263,RI_chrX_11709573_11710335,I_chrX_11710380_11710454 chrX - chrX_11709573_11710458;chrX_11709573_11710335;chrX_11709573_11710454;chrX_11709573_11710263 chrX_11709573_11709680 chrX_11709473_11709572;chrX_11710459_11710479 23.33 22.22 21.43 41.18 12.50 33.33 27.78 36.84 23.33 25.00 20.00 23.53 25.00 30.00 27.27 35.29 20.00 14.29 37.50 19.05 11.11 25.00 11.11 13.33 11.11 12.50 10.00 12.50 27.27 28.57 27.78 33.33 50.00 29.41 40.00 28.57 5.56 10.00 10.00 25.00 50.00 25.00 40.00 12.50 28.57 40.00 12.50 41.67 21.74 16.67 18.18 11.11 14.29 20.00 16.67 14.29 12.50 37.50 K alternative_acceptor dlg1,I_chrX_11281967_11282030 chrX + chrX_11263833_11267849;chrX_11263833_11268289 chrX_11263833_11268301 chrX_11263820_11263832;chrX_11268302_11268531 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD bif,I_chrX_11581793_11583233 chrX + chrX_11575148_11575750 chrX_11575201_11575750 chrX_11575751_11577495;chrX_11574877_11575147 4.00 NA NA NA NA NA NA NA 4.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 4.17 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_donor eIF5B chr3L - chr3L_3447725_3457214 chr3L_3447725_3447949 chr3L_3447648_3447724;chr3L_3457215_3457347 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.42 0.32 0.00 0.00 0.31 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG8478,CREF_chr3R_5589662_5589762 chr3R + chr3R_5589658_5589747;chr3R_5589658_5589759 chr3R_5589658_5589762 chr3R_5589562_5589657;chr3R_5589763_5589862 95.54 96.43 95.56 94.83 95.65 95.65 97.06 94.00 90.91 95.00 93.10 94.12 90.91 95.00 93.94 97.87 93.33 96.15 96.15 96.30 93.75 96.55 91.89 96.55 94.74 91.67 100.00 93.33 95.83 98.08 96.77 97.14 90.32 92.16 95.65 93.33 90.62 97.30 97.56 93.85 96.55 96.67 100.00 96.77 89.13 90.91 96.15 96.88 95.52 94.74 89.74 90.91 90.48 100.00 96.55 97.14 NA 89.47 K intron_retention Adar,I_chrX_1668256_1682696,I_chrX_1674594_1674717 chrX + chrX_1677069_1677141 chrX_1677068_1677069;chrX_1677141_1677142 chrX_1676969_1677068;chrX_1677142_1677621 0.00 NA 12.00 5.26 0.00 0.00 0.00 9.38 7.89 0.00 0.00 0.00 NA 0.00 0.00 13.79 0.00 0.00 6.90 9.30 0.00 21.05 0.00 7.41 NA 0.00 11.76 NA 20.00 0.00 5.00 NA 0.00 6.25 NA 0.00 0.00 0.00 0.00 0.00 NA 5.56 0.00 0.00 NA 0.00 15.38 6.06 0.00 0.00 0.00 6.25 NA NA 3.57 0.00 NA 0.00 K intron_retention asrij,MED23 chr2R + chr2R_18774772_18774832 chr2R_18774771_18774772;chr2R_18774832_18774833 chr2R_18774708_18774771;chr2R_18774833_18774897 0.00 0.00 0.00 NA 0.00 NA 12.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.93 2.33 0.00 NA 4.84 12.50 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 3.60 0.00 1.06 0.00 0.00 2.78 NA 0.00 4.44 1.16 0.00 0.00 14.81 4.00 0.00 0.00 0.00 2.50 NA 0.00 0.00 0.00 K intron_retention CG9705,I_chr3L_16773492_16773604,I_chr3L_16773517_16773604,I_chr3L_16774043_16774562 chr3L + chr3L_16773521_16773604 chr3L_16773520_16773521;chr3L_16773604_16773605 chr3L_16773212_16773520;chr3L_16773605_16773704 30.00 29.20 27.64 51.06 29.91 31.30 12.86 37.72 27.91 40.51 20.00 33.66 26.26 28.16 38.36 20.83 25.53 35.79 27.18 30.53 24.79 81.75 41.79 27.93 30.95 54.74 43.64 51.00 63.11 33.63 22.09 30.00 43.00 26.38 40.45 39.05 30.56 33.71 30.08 29.46 31.33 31.73 22.55 27.83 31.79 24.77 27.87 33.96 27.01 30.16 32.76 29.89 24.51 27.37 29.03 27.48 22.83 20.85 K alternative_donor I_chr3L_3151185_3151263,CG32280 chr3L + chr3L_3165222_3167941;chr3L_3165255_3167941;chr3L_3165390_3167941;chr3L_3165704_3167941;chr3L_3165407_3167941 chr3L_3165352_3167941 chr3L_3167942_3168265;chr3L_3165212_3165221 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA 0.00 33.33 K alternative_acceptor Eip71CD chr3L + chr3L_15505837_15505905 chr3L_15505837_15505895 chr3L_15505771_15505836;chr3L_15505906_15505963 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K mutually_exclusive Dhc64C chr3L - chr3L_4811670_4812893,chr3L_4813090_4813327 chr3L_4811670_4812056,chr3L_4812256_4813327 chr3L_4812894_4813089 chr3L_4812057_4812255 chr3L_4811552_4811669;chr3L_4813328_4815436 48.00 43.86 46.51 56.63 47.22 48.89 57.89 49.48 48.84 5.56 60.53 35.64 34.78 48.00 52.73 58.21 46.67 55.00 55.56 48.70 68.42 60.66 41.53 45.24 42.19 51.16 44.32 66.67 37.78 42.86 50.88 47.06 55.77 49.00 45.61 51.72 38.89 48.57 39.78 41.57 50.00 43.22 51.16 49.21 62.86 43.75 41.27 71.43 50.94 47.17 41.67 51.11 34.78 38.24 47.76 31.25 44.44 52.38 K alternative_acceptor CG33936,CG33937,RI_chr3R_5183458_5183705 chr3R + chr3R_5181426_5182145 chr3R_5181426_5182086 chr3R_5181230_5181425;chr3R_5182146_5182392 87.50 NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA 100.00 83.33 NA NA NA NA 71.43 NA NA NA 100.00 NA NA 63.64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention I_chr3L_3151185_3151263,CG32280 chr3L + chr3L_3168266_3168334 chr3L_3168265_3168266;chr3L_3168334_3168335 chr3L_3167942_3168265;chr3L_3168335_3168494 0.68 0.00 0.00 4.88 0.00 0.00 3.28 6.25 4.85 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 1.45 0.00 3.82 6.45 5.56 0.00 0.00 0.00 6.98 1.61 5.32 1.56 0.00 1.30 2.02 2.08 5.62 1.61 2.17 0.68 0.00 2.56 1.95 0.00 3.81 0.00 0.00 2.27 2.67 0.00 0.74 1.90 0.00 2.75 0.00 0.00 0.00 0.00 2.94 0.67 0.00 K alternative_acceptor CG12213 chr3R - chr3R_7792456_7792518 chr3R_7792462_7792518 chr3R_7792519_7792847;chr3R_7792210_7792455 100.00 100.00 100.00 99.14 97.62 100.00 100.00 98.78 100.00 100.00 100.00 100.00 100.00 100.00 98.55 100.00 100.00 100.00 100.00 99.05 100.00 100.00 100.00 98.31 100.00 98.36 98.08 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 98.39 100.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 98.15 100.00 100.00 100.00 98.15 99.09 K intron_retention CG14868,CG6136 chr3R - chr3R_11195986_11196040 chr3R_11195985_11195986;chr3R_11196040_11196041 chr3R_11195757_11195985;chr3R_11196041_11196089 100.00 100.00 90.00 100.00 NA 100.00 94.44 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 92.86 NA NA 100.00 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 K alternative_donor RpL9,I_chr2L_11003762_11003828 chr2L - chr2L_11003762_11004005 chr2L_11003762_11003828 chr2L_11003662_11003761;chr2L_11004006_11004055 0.02 0.00 0.02 0.02 0.00 0.02 0.00 0.03 0.01 0.03 0.00 0.01 0.00 0.07 0.00 0.03 0.00 0.02 0.00 0.02 0.02 0.03 0.08 0.02 0.00 0.00 0.03 0.09 0.03 0.03 0.02 0.00 0.01 0.03 0.00 0.00 0.00 0.03 0.02 0.07 0.03 0.01 0.02 0.00 0.03 0.06 0.03 0.02 0.03 0.03 0.04 0.03 0.03 0.00 0.02 0.02 0.01 0.03 K intron_retention Pep,I_chr3L_17637180_17637918 chr3L - chr3L_17633154_17634125 chr3L_17633153_17633154;chr3L_17634125_17634126 chr3L_17631217_17633153;chr3L_17634126_17634355 3.12 4.41 3.70 5.67 2.34 4.35 4.30 4.46 3.74 2.60 4.12 4.12 7.02 5.00 1.63 4.62 3.79 2.61 4.27 2.11 3.37 2.15 2.55 1.99 7.84 1.98 3.03 3.33 4.29 1.18 4.72 0.00 0.00 3.12 2.78 1.43 2.91 3.92 4.65 1.96 0.00 3.18 3.82 3.20 1.19 2.22 3.91 0.95 4.37 2.46 1.59 0.00 3.08 1.14 3.61 5.36 2.14 2.73 K alternative_acceptor Klc,I_chr3L_12741779_12743062,I_chr3L_12741783_12742943,I_chr3L_12741838_12743062 chr3L - chr3L_12741779_12743062;chr3L_12741783_12743062 chr3L_12741838_12743062 chr3L_12743063_12743083;chr3L_12741738_12741778 0.00 2.04 3.08 0.99 0.00 0.00 1.60 0.00 1.20 0.00 0.00 1.11 0.00 0.00 0.00 0.96 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 9.62 0.00 0.00 2.94 0.00 1.72 0.00 0.00 2.02 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 5.56 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Atox1,R_chr3L_21634285_21634386,RI_chr3L_21634463_21635078 chr3L + chr3L_21634463_21635078 chr3L_21634463_21635073 chr3L_21634387_21634462;chr3L_21635079_21635178 100.00 100.00 95.45 100.00 100.00 100.00 94.12 94.74 96.97 95.65 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 96.15 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 95.65 94.74 100.00 96.30 94.44 96.77 100.00 96.15 100.00 100.00 100.00 96.77 97.37 96.43 96.77 97.06 100.00 100.00 100.00 100.00 100.00 100.00 95.45 97.92 98.88 K alternative_acceptor msn,I_chr3L_2558033_2560115,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2558036_2560115;chr3L_2558390_2560115 chr3L_2558393_2560115 chr3L_2560116_2560215;chr3L_2557936_2558035 2.13 2.04 1.23 2.14 4.04 2.18 1.41 2.13 2.53 2.39 1.34 2.22 3.82 2.13 2.16 4.19 4.08 1.82 2.58 1.53 1.55 2.53 1.30 2.12 3.38 2.62 2.07 1.23 2.00 2.59 1.87 2.08 1.98 1.65 1.32 1.94 1.43 1.84 1.53 2.29 2.49 2.54 2.83 1.82 2.50 1.27 2.70 1.69 2.27 1.53 2.24 2.48 2.36 2.22 1.44 4.14 2.08 2.28 K intron_retention tai,I_chr2L_9191814_9206231 chr2L + chr2L_9243901_9244262 chr2L_9243900_9243901;chr2L_9244262_9244263 chr2L_9243648_9243900;chr2L_9244263_9244318 10.00 8.33 6.67 NA 7.14 NA 25.00 NA 17.86 0.00 NA 17.39 NA NA 20.00 36.36 21.43 25.00 NA 21.43 NA 10.17 10.87 13.51 5.88 25.00 11.76 16.67 5.43 12.82 16.67 0.00 9.80 16.00 0.00 10.71 5.97 11.11 10.00 19.35 13.64 18.52 NA 0.00 0.00 3.12 0.00 5.26 9.68 0.00 6.25 NA 3.45 0.00 21.05 0.00 8.33 6.25 K alternative_acceptor CG2774 chr2L + chr2L_3451244_3451306 chr2L_3451244_3451300 chr2L_3450358_3451243;chr2L_3451307_3451453 100.00 100.00 100.00 100.00 96.55 100.00 96.88 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 93.75 100.00 100.00 96.00 100.00 100.00 K jcn_only_AA CHES-1-like,I_chrX_7584030_7588818 chrX - chrX_7580832_7580901 chrX_7580835_7580901 chrX_7580902_7581780;chrX_7580616_7580831 90.32 80.00 NA 84.85 93.10 NA 90.32 93.10 86.54 85.71 100.00 91.11 85.00 87.50 92.00 NA 100.00 89.66 90.91 91.84 NA 90.72 85.37 84.09 97.30 89.66 91.67 85.71 86.11 91.18 100.00 NA 86.67 90.00 NA 96.15 88.16 88.89 93.10 94.44 NA 88.16 NA 93.48 NA 92.00 NA 88.57 92.59 NA 90.00 83.33 NA NA 75.76 100.00 96.43 NA K intron_retention Rab2,I_chr2R_2584435_2585553 chr2R + chr2R_2584435_2584920 chr2R_2584434_2584435;chr2R_2584920_2584921 chr2R_2584335_2584434;chr2R_2584921_2585080 0.93 1.05 0.79 1.01 0.00 0.00 0.38 0.54 0.00 0.00 0.00 0.47 0.00 0.97 0.00 0.30 1.43 1.00 0.85 1.07 0.00 3.95 0.78 1.39 1.44 0.80 0.48 3.54 4.29 0.00 0.70 1.48 1.50 0.00 1.20 1.04 2.01 0.00 0.66 1.33 1.98 0.93 0.00 1.47 1.38 0.93 1.24 2.22 0.63 1.54 1.67 0.00 1.02 0.00 0.72 1.66 1.23 1.42 K jcn_only_AD orb2,I_chr3L_8942860_8947477 chr3L - chr3L_8942860_8947477 chr3L_8942860_8947032 chr3L_8942760_8942859;chr3L_8947478_8947521 95.24 96.77 95.83 95.24 NA NA 93.55 90.62 89.83 85.71 100.00 91.84 NA 95.24 92.68 96.88 96.67 NA NA 100.00 NA 97.30 98.08 93.75 NA NA 90.62 91.67 97.06 100.00 100.00 NA 96.97 94.12 NA 96.43 94.03 93.94 100.00 93.33 100.00 100.00 NA 95.24 NA 97.06 92.31 97.62 91.67 90.00 89.19 96.67 NA NA 92.00 93.10 91.67 96.43 K intron_retention Nf-YC,CG12796 chrX - chrX_6714558_6714715 chrX_6714557_6714558;chrX_6714715_6714716 chrX_6713189_6714557;chrX_6714716_6714877 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor I_chr2R_18485635_18487415,CG4269 chr2R + chr2R_18485635_18487415 chr2R_18486956_18487415 chr2R_18487416_18487515;chr2R_18485535_18485634 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 50.00 100.00 NA 100.00 50.00 100.00 100.00 83.33 100.00 50.00 100.00 100.00 75.00 71.43 50.00 100.00 100.00 100.00 50.00 66.67 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 NA 100.00 NA NA K cassette pr-set7 chr3R + chr3R_10141926_10142198 chr3R_10141926_10142032;chr3R_10142094_10142198 chr3R_10142033_10142093 chr3R_10141765_10141925;chr3R_10142199_10142589 6.25 10.53 5.88 7.41 NA 10.53 10.00 5.88 0.00 NA NA 5.00 5.56 6.25 6.67 6.90 NA 25.00 7.14 3.33 NA NA 0.00 NA 8.33 5.56 NA NA NA NA 4.76 NA NA 7.41 8.70 6.67 NA NA NA 21.43 NA 6.25 5.26 NA NA NA NA 6.67 0.00 NA 6.25 NA NA NA 5.00 NA NA NA K alternative_donor Cctgamma chr3R + chr3R_12473409_12473557;chr3R_12473318_12473557;chr3R_12473420_12473557;chr3R_12473424_12473557;chr3R_12473464_12473557 chr3R_12473479_12473557 chr3R_12473558_12473651;chr3R_12473311_12473317 4.76 3.57 8.00 5.41 4.35 7.14 5.56 8.70 7.94 0.00 0.00 6.06 0.00 8.00 7.41 0.00 4.17 0.00 0.00 8.57 4.76 0.00 0.00 0.00 7.14 5.26 0.00 4.76 15.38 0.00 7.41 13.33 15.38 8.33 0.00 7.69 3.45 0.00 0.00 3.33 20.00 7.89 4.76 0.00 7.69 11.11 0.00 8.33 5.00 4.17 0.00 0.00 7.69 7.14 6.67 0.00 3.45 10.53 K intron_retention CG11790,CG11791 chr3R + chr3R_20875669_20876344 chr3R_20875668_20875669;chr3R_20876344_20876345 chr3R_20875600_20875668;chr3R_20876345_20876625 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 96.67 NA 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 91.67 100.00 100.00 100.00 NA NA NA 100.00 92.31 100.00 100.00 92.86 NA 100.00 94.74 100.00 95.83 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 K alternative_donor Hr39,I_chr2L_21256047_21256260 chr2L + chr2L_21237347_21238280;chr2L_21237421_21238280;chr2L_21237364_21238280;chr2L_21237397_21238280;chr2L_21237405_21238280 chr2L_21237385_21238280 chr2L_21238281_21238529;chr2L_21237247_21237346 0.00 9.09 0.00 0.00 0.00 0.00 0.00 5.88 3.57 0.00 14.29 0.00 0.00 15.38 12.50 3.57 0.00 9.09 0.00 5.26 10.00 12.50 0.00 10.00 7.69 7.69 5.00 0.00 14.29 0.00 0.00 NA 9.09 4.55 0.00 0.00 NA 0.00 7.14 3.33 NA 5.00 0.00 0.00 0.00 0.00 16.67 0.00 4.17 0.00 0.00 0.00 0.00 NA 0.00 16.67 NA 0.00 K intron_retention faf,RI_chr3R_27603474_27603893,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27613446_27613523 chr3R_27613445_27613446;chr3R_27613523_27613524 chr3R_27612869_27613445;chr3R_27613524_27613919 54.17 56.52 68.18 47.62 61.54 41.18 61.29 48.57 64.00 68.75 47.06 51.43 59.09 58.33 60.87 45.16 61.90 65.00 47.83 50.00 62.50 63.33 48.65 52.00 47.83 47.83 52.50 65.00 62.16 50.00 47.22 70.00 58.62 67.86 50.00 34.15 66.67 53.33 53.57 54.00 57.89 58.70 47.83 54.17 56.76 54.35 50.00 55.10 52.38 63.16 60.00 50.00 68.75 50.00 53.12 54.84 52.00 52.63 K intron_retention l(1)G0222,I_chrX_17473084_17473137 chrX - chrX_17472801_17472853 chrX_17472800_17472801;chrX_17472853_17472854 chrX_17472708_17472800;chrX_17472854_17472864 77.78 77.78 76.92 92.31 NA 81.82 73.68 73.33 73.08 NA NA 66.67 88.89 80.00 88.89 71.43 NA NA 86.67 80.00 NA 52.00 75.00 NA NA NA 75.00 NA NA NA NA NA 61.90 66.67 60.00 NA 76.92 NA 100.00 71.43 NA 80.95 NA 88.89 NA NA 88.89 69.23 100.00 77.78 81.25 NA NA NA 90.91 NA NA NA K intron_retention nonA,I_chrX_16256088_16259237,I_chrX_16265109_16265346 chrX + chrX_16259676_16265346 chrX_16259675_16259676;chrX_16265346_16265347 chrX_16259620_16259675;chrX_16265347_16265446 13.39 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.14 0.00 NA NA NA NA 12.50 NA 15.00 25.00 NA NA NA NA NA NA NA NA 6.67 K intron_retention CG42507,Trl,I_chr3L_14745733_14745798,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14744876_14746310 chr3L_14744875_14744876;chr3L_14746310_14746311 chr3L_14744367_14744875;chr3L_14746311_14746571 83.12 88.41 78.67 78.95 78.18 78.95 80.85 78.49 80.67 76.74 83.02 77.00 96.88 86.36 81.82 70.69 82.98 78.57 80.77 73.20 82.00 86.61 71.05 93.33 85.71 89.06 77.42 88.33 90.77 88.44 80.36 88.89 86.46 87.95 83.12 84.91 85.29 75.90 74.02 88.15 86.09 82.54 83.72 88.89 92.06 82.17 80.56 91.43 84.11 88.00 82.35 76.09 85.06 86.59 84.29 85.88 76.67 90.51 K alternative_donor Rga,I_chr3R_1436346_1436552,I_chr3R_1436346_1437602,I_chr3R_1436346_1437897,Spec2 chr3R - chr3R_1436346_1437897;chr3R_1436346_1437791 chr3R_1436346_1436552 chr3R_1436246_1436345;chr3R_1437898_1437963 0.00 0.00 0.00 1.25 0.00 0.00 1.28 0.00 0.89 0.00 2.22 0.97 0.00 0.00 0.00 1.28 2.00 2.17 0.00 0.89 2.00 0.00 0.00 1.23 0.00 0.00 1.47 2.78 1.23 1.54 0.00 0.00 0.00 1.19 1.92 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG15547,Sap-r,I_chr3R_26712627_26714606,RI_chr3R_26713323_26714382 chr3R - chr3R_26709640_26709697 chr3R_26709639_26709640;chr3R_26709697_26709698 chr3R_26709142_26709639;chr3R_26709698_26709839 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.04 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention by,RI_chr3R_5373093_5377292 chr3R - chr3R_5354554_5354622 chr3R_5354553_5354554;chr3R_5354622_5354623 chr3R_5354203_5354553;chr3R_5354623_5354675 100.00 100.00 100.00 97.37 95.24 100.00 96.43 100.00 98.51 100.00 100.00 97.96 96.30 96.55 100.00 97.50 100.00 100.00 97.22 98.44 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 95.65 97.22 97.14 96.49 97.30 100.00 98.28 96.15 100.00 100.00 100.00 100.00 97.22 96.67 100.00 94.74 K jcn_only_AA CG5087 chr3L + chr3L_8993558_8993705 chr3L_8993558_8993702 chr3L_8993439_8993557;chr3L_8993706_8994883 92.98 NA NA 95.12 NA NA 92.86 97.30 90.00 NA NA 92.31 NA NA NA 90.32 NA NA 85.71 90.91 NA 95.45 100.00 86.96 NA NA NA NA NA 95.65 NA NA NA 93.55 NA NA NA NA NA 90.00 NA 100.00 NA 88.00 NA NA NA NA 88.89 NA 93.10 NA NA NA 95.45 NA 95.00 NA K cassette cp309,I_chr3L_15074145_15074432 chr3L - chr3L_15066295_15067783;chr3L_15066295_15067424 chr3L_15066295_15066406;chr3L_15066431_15067783,chr3L_15066431_15067424 chr3L_15066407_15066430 chr3L_15066244_15066294;chr3L_15067784_15068947 75.00 55.56 90.00 92.31 NA 62.50 43.75 78.57 57.14 25.00 60.00 78.57 NA 88.89 70.00 81.25 66.67 66.67 87.50 76.47 75.00 NA 83.33 87.50 NA 36.36 83.33 NA NA 75.00 85.71 NA 85.71 64.29 66.67 42.86 69.23 NA NA 71.43 NA 100.00 NA NA NA NA 100.00 NA 66.67 NA 72.73 NA NA NA 85.71 NA NA NA K intron_retention CG15440,Gs1l,I_chr2L_4456517_4456723 chr2L - chr2L_4454266_4454326 chr2L_4454265_4454266;chr2L_4454326_4454327 chr2L_4453167_4454265;chr2L_4454327_4454443 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 2.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ens,I_chr3L_4130719_4131120 chr3L - chr3L_4132204_4133768 chr3L_4132203_4132204;chr3L_4133768_4133769 chr3L_4131956_4132203;chr3L_4133769_4133822 75.72 NA 81.82 71.43 NA NA NA 91.67 64.71 NA NA 68.75 NA NA NA 88.89 NA NA NA 63.16 NA NA 40.00 NA NA NA NA 11.76 80.00 66.67 87.50 NA 80.00 83.33 NA 60.00 NA 41.67 NA 61.11 100.00 62.50 NA 60.00 87.50 92.31 NA 93.10 81.25 NA 70.00 NA 45.45 NA 90.00 NA NA 93.75 K jcn_only_AD eIF5,noncoding_24049,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15885416_15885925;chrX_15885416_15885854;chrX_15885416_15885783 chrX_15885416_15885611 chrX_15885316_15885415;chrX_15885926_15885954 2.31 NA 7.41 4.55 NA NA 0.00 2.94 2.78 NA NA 4.76 NA 0.00 NA 2.78 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 4.17 5.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA 1.85 NA NA NA NA NA NA NA NA 0.00 K alternative_donor MAPk-Ak2,RI_chrX_5655618_5656137,I_chrX_5656715_5657974 chrX - chrX_5655618_5656137 chrX_5655618_5656133 chrX_5655518_5655617;chrX_5656138_5656237 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.57 98.91 99.30 98.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.07 100.00 99.11 100.00 100.00 99.12 98.67 100.00 100.00 100.00 100.00 98.98 100.00 100.00 98.51 99.43 99.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.46 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_last_exon hts,I_chr2R_15286599_15294119,CG34197,I_chr2R_15293594_15294119,RI_chr2R_15294446_15295345,I_chr2R_15294825_15295345,I_chr2R_15295410_15295479,I_chr2R_15311185_15312327,I_chr2R_15311303_15312026 chr2R - chr2R_15294825_15295345;chr2R_15293594_15295345;chr2R_15288861_15295345;chr2R_15294662_15295345 chr2R_15286599_15295345 chr2R_15293525_15293593;chr2R_15287023_15288860;chr2R_15294405_15294661 chr2R_15286527_15286598 chr2R_15295346_15295409 54.84 52.78 56.18 37.84 61.11 60.67 61.64 51.91 50.00 22.22 44.68 60.28 71.88 61.25 58.14 57.61 59.32 60.53 64.47 60.33 45.90 54.39 40.82 46.25 49.15 70.89 53.85 55.00 73.91 40.35 62.00 58.62 48.05 55.04 51.72 40.26 51.35 45.16 47.83 53.44 47.46 52.98 65.67 54.63 67.16 49.57 56.16 58.21 58.56 52.11 42.74 54.84 57.75 55.74 61.42 52.56 57.14 54.78 N jcn_only_AA vkg,I_chr2L_5027222_5027297,I_chr2L_5027222_5028118 chr2L - chr2L_5027204_5027351 chr2L_5027222_5027351 chr2L_5027352_5027389;chr2L_5027122_5027203 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.61 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention alpha-Spec chr3L - chr3L_1784599_1784906 chr3L_1784598_1784599;chr3L_1784906_1784907 chr3L_1784503_1784598;chr3L_1784907_1788957 39.26 NA NA NA NA NA NA NA NA NA NA 36.84 NA NA NA NA NA NA NA 22.22 NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA 41.67 NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD RI_chr3R_19759126_19759198,Gdh,E_chr3R_19762765_19768309 chr3R - chr3R_19762368_19763144 chr3R_19762368_19762702 chr3R_19761680_19762367 0.00 0.00 0.00 15.38 NA NA NA 2.13 0.00 NA 0.00 5.56 0.00 0.00 NA NA NA 0.00 NA 0.00 4.76 0.00 0.00 3.70 NA NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 3.23 3.45 0.00 0.00 NA 0.00 NA 0.00 2.56 0.00 0.00 NA 3.45 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA K intron_retention SelR,I_chr3R_6691367_6692250,I_chr3R_6692461_6692530,I_chr3R_6694098_6694160 chr3R - chr3R_6689581_6692250 chr3R_6689580_6689581;chr3R_6692250_6692251 chr3R_6689562_6689580;chr3R_6692251_6692350 30.77 14.29 35.71 29.17 NA NA 75.00 33.33 45.83 14.29 88.24 42.86 41.67 NA 46.15 NA NA 31.25 NA 62.50 54.55 NA 16.67 11.76 NA 46.15 22.22 41.67 30.77 28.57 NA NA 20.00 26.67 30.77 20.83 11.76 22.22 23.53 3.85 NA 35.00 46.15 NA 6.67 31.25 NA 11.76 43.75 33.33 47.06 NA NA 11.11 50.00 5.00 18.52 14.81 K jcn_only_AA Lag1,RI_chrX_6153758_6161036,I_chrX_6160751_6160887,I_chrX_6160907_6161036 chrX - chrX_6153758_6161036;chrX_6160751_6161036 chrX_6160907_6161036 chrX_6161037_6161136 8.15 3.45 9.38 5.56 4.00 13.64 13.51 1.85 9.23 7.69 11.54 15.94 2.70 7.14 3.85 11.67 13.16 7.89 5.36 9.72 13.79 3.51 6.98 9.09 NA 5.56 9.09 NA 4.88 5.66 9.26 14.29 12.82 6.02 14.63 3.12 4.76 11.11 14.29 17.14 7.50 9.52 6.00 1.75 15.15 4.35 7.69 7.32 8.42 14.63 6.25 NA 14.29 7.14 8.70 8.89 17.65 2.30 N cassette htt,I_chr3R_24527763_24528033,I_chr3R_24542203_24543363 chr3R + chr3R_24547720_24550721 chr3R_24547720_24549542;chr3R_24549792_24550721 chr3R_24549543_24549791 chr3R_24547532_24547719;chr3R_24550722_24551085 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N jcn_only_AA CG1115,F_chr3R_1052705_1053045 chr3R + chr3R_1052701_1053094 chr3R_1052701_1053045 chr3R_1052605_1052700;chr3R_1053095_1053145 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 81.25 100.00 100.00 100.00 100.00 81.54 100.00 100.00 100.00 100.00 K intron_retention CG34413,RI_chr2R_20769295_20770153,I_chr2R_20771136_20772048,I_chr2R_20773500_20774745 chr2R + chr2R_20769150_20770153 chr2R_20769149_20769150;chr2R_20770153_20770154 chr2R_20769141_20769149;chr2R_20770154_20770253 8.00 9.09 9.86 7.23 2.35 2.30 12.99 9.46 9.72 8.70 3.39 10.00 7.27 7.81 5.00 14.00 6.25 8.20 12.31 9.00 0.00 46.00 12.73 6.17 9.80 9.86 15.52 15.79 23.91 13.79 7.69 NA 21.21 6.12 12.00 30.00 5.50 0.00 2.74 9.82 NA 6.06 1.82 8.33 4.00 4.76 7.41 10.71 6.99 4.76 11.76 4.00 10.81 0.00 4.76 5.71 7.69 NA K intron_retention CG1074,I_chr3R_261173_261244,RI_chr3R_265878_265942 chr3R + chr3R_261173_261228 chr3R_261172_261173;chr3R_261228_261229 chr3R_261073_261172;chr3R_261229_261897 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.57 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Rpd3 chr3L + chr3L_4627533_4627610 chr3L_4627533_4627583 chr3L_4627420_4627532;chr3L_4627611_4628856 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.83 0.77 0.00 K alternative_donor CG9603,I_chr3R_4165812_4166062 chr3R - chr3R_4165812_4166151 chr3R_4165812_4166149 chr3R_4165712_4165811;chr3R_4166152_4166162 100.00 100.00 99.52 100.00 100.00 99.42 100.00 99.74 100.00 100.00 100.00 100.00 100.00 100.00 99.57 100.00 100.00 99.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.54 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.68 99.38 100.00 100.00 99.47 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Pect,I_chr2L_13207997_13208109,E_chr2L_13208285_13210076 chr2L + chr2L_13208778_13209435;chr2L_13208778_13209492;chr2L_13208778_13209471 chr2L_13208778_13209501 chr2L_13208665_13208777;chr2L_13209502_13209599 0.40 0.69 0.00 0.47 0.00 0.00 0.00 0.44 0.00 1.33 0.00 0.44 2.48 0.00 0.00 0.48 0.00 0.00 0.79 0.34 0.00 0.93 0.48 0.63 1.08 0.00 0.48 0.00 1.39 0.00 1.68 1.32 1.94 0.00 0.85 0.00 0.00 0.88 0.00 0.00 0.00 0.40 0.00 0.70 1.20 0.78 0.00 0.00 0.43 0.90 1.00 0.79 0.00 0.00 0.65 0.00 0.68 0.00 K jcn_only_AD mbf1,RI_chr3L_16567888_16567952,RI_chr3L_16568077_16568816 chr3L + chr3L_16567770_16567952;chr3L_16567853_16567952 chr3L_16567888_16567952 chr3L_16567953_16568052;chr3L_16567701_16567769 1.66 1.29 1.06 3.14 0.45 0.81 2.47 1.69 0.91 1.75 3.05 3.20 2.52 1.91 1.66 0.83 2.26 1.29 0.64 1.89 0.00 5.41 0.44 1.41 6.09 0.79 0.00 0.50 4.98 1.44 2.05 2.05 3.94 1.14 6.36 1.59 2.42 1.54 1.61 1.66 5.98 2.56 1.43 1.75 3.78 2.22 3.98 4.00 1.53 0.43 0.00 3.31 0.64 0.95 1.04 1.82 0.62 0.83 K cassette pod1 chrX + chrX_6701682_6702844 chrX_6701682_6701831;chrX_6702375_6702844 chrX_6701832_6702374 chrX_6701529_6701681;chrX_6702845_6703028 2.22 2.70 2.33 10.34 1.27 1.15 1.77 1.65 1.47 4.82 3.12 2.17 2.94 2.44 2.86 10.75 0.00 3.57 1.18 5.30 3.95 2.22 1.39 1.89 3.03 1.28 2.61 7.69 7.02 2.25 1.82 3.70 9.21 2.13 3.12 1.54 2.76 1.12 1.57 1.74 2.56 1.28 1.28 1.92 7.41 3.45 1.35 6.82 2.01 2.00 1.33 3.08 1.92 0.00 1.83 4.08 2.13 4.00 K alternative_donor CkIIbeta,I_chrX_11686847_11687475,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11686701_11687475 chrX_11686720_11687475 chrX_11687476_11687551;chrX_11686609_11686700 98.81 100.00 100.00 97.44 94.12 100.00 100.00 97.06 94.74 100.00 100.00 100.00 100.00 88.89 82.61 96.88 94.74 100.00 96.00 97.50 92.86 100.00 96.00 95.65 94.44 92.31 94.12 91.67 100.00 100.00 94.44 NA 100.00 96.97 100.00 100.00 100.00 93.75 100.00 97.22 100.00 97.62 100.00 100.00 NA 92.86 94.12 NA 100.00 100.00 100.00 94.12 100.00 100.00 94.74 100.00 100.00 90.00 K alternative_acceptor CG11125 chr2R + chr2R_3336125_3336287 chr2R_3336125_3336263 chr2R_3335817_3336124;chr2R_3336288_3336446 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Phax,RI_chr2R_5006333_5006392 chr2R + chr2R_5001898_5001955 chr2R_5001897_5001898;chr2R_5001955_5001956 chr2R_5001789_5001897;chr2R_5001956_5002688 5.63 5.36 2.50 4.88 0.00 4.35 5.00 3.85 10.53 0.00 7.69 12.50 0.00 23.81 6.45 7.69 0.00 11.54 0.00 9.33 0.00 5.71 2.90 9.62 8.33 10.53 5.63 4.88 2.08 4.00 13.33 6.67 17.14 6.25 3.33 4.65 3.85 1.82 5.10 7.14 0.00 13.33 9.52 4.17 8.70 8.89 10.87 8.33 12.00 5.26 1.67 0.00 6.45 7.14 9.09 9.26 5.26 0.00 K intron_retention kis,I_chr2L_228282_230537,I_chr2L_229978_230537,RI_chr2L_231035_231947,RI_chr2L_242745_242800,I_chr2L_242926_250756 chr2L - chr2L_229383_230537 chr2L_229382_229383;chr2L_230537_230538 chr2L_229173_229382;chr2L_230538_230627 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.67 0.00 0.00 0.00 0.00 0.00 NA 1.37 0.00 0.00 0.00 K intron_retention CG17490 chr2L + chr2L_22431088_22432684 chr2L_22431087_22431088;chr2L_22432684_22432685 chr2L_22431022_22431087;chr2L_22432685_22433056 95.34 95.00 100.00 95.24 95.00 95.24 97.56 92.50 100.00 100.00 93.33 97.06 95.24 96.00 95.45 97.92 100.00 95.24 96.77 90.00 94.12 95.00 94.44 94.74 NA 100.00 94.12 NA 100.00 100.00 97.83 90.91 90.00 96.23 92.86 87.50 92.86 90.91 100.00 95.12 NA 100.00 96.43 96.67 100.00 100.00 95.45 100.00 98.04 86.36 94.44 100.00 94.44 91.67 97.14 100.00 92.59 86.36 K jcn_only_AA I_chr2R_13433672_13433749,MESR4 chr2R + chr2R_13438897_13438954 chr2R_13438897_13438948 chr2R_13438630_13438896;chr2R_13438955_13443644 95.99 100.00 89.66 97.62 100.00 95.00 88.89 100.00 93.18 NA NA 96.30 93.10 NA 92.86 88.64 96.88 93.75 94.29 100.00 95.83 100.00 87.10 95.45 100.00 95.24 93.75 NA NA 100.00 NA NA 100.00 98.08 NA 95.24 96.43 NA 95.65 100.00 NA 98.00 95.83 100.00 NA 100.00 NA 96.15 95.83 95.24 96.88 NA NA NA 93.55 NA NA 100.00 K intron_retention CG7720 chr3R - chr3R_14587460_14587553 chr3R_14587459_14587460;chr3R_14587553_14587554 chr3R_14587324_14587459;chr3R_14587554_14587728 36.00 NA NA NA 30.77 NA 40.00 30.77 50.00 NA NA 40.00 NA NA 35.71 NA NA NA NA 50.00 NA 18.18 40.00 52.94 NA NA 33.33 NA NA NA 88.89 NA NA NA NA NA 36.00 NA 28.57 46.15 33.33 33.33 NA 8.33 35.71 NA 40.00 NA 40.00 29.41 40.00 NA 23.08 60.00 NA 43.75 35.29 NA K alternative_acceptor dnc,I_chrX_3150245_3150319,I_chrX_3150351_3152643 chrX + chrX_3150245_3152643;chrX_3150245_3152646 chrX_3150245_3150319 chrX_3150235_3150244;chrX_3152647_3152733 30.00 40.00 15.38 37.50 50.00 18.18 37.50 30.00 53.33 NA 25.00 16.67 13.33 40.00 18.75 30.77 50.00 30.00 25.00 14.29 20.00 NA 25.00 33.33 NA 22.22 50.00 NA NA 33.33 23.53 NA 0.00 30.43 33.33 33.33 NA NA NA NA NA 21.74 33.33 NA NA 33.33 50.00 NA 22.58 NA 25.00 NA NA 50.00 27.27 33.33 20.00 NA K jcn_only_AD Lmpt,I_chr3L_16904980_16905228 chr3L + chr3L_16877105_16889903 chr3L_16889700_16889903 chr3L_16889904_16889988 19.55 11.11 20.29 11.54 14.71 19.67 16.33 14.89 25.76 11.76 28.00 10.59 NA 20.00 13.21 16.28 20.00 9.09 12.50 25.97 21.88 30.19 15.00 26.47 43.24 33.33 29.73 45.00 43.40 13.89 19.44 5.41 18.18 11.94 47.62 30.61 22.73 21.05 15.38 18.99 16.18 16.67 27.59 8.11 13.33 6.56 28.57 15.04 15.71 33.33 24.59 21.74 NA 29.17 20.59 25.93 NA 10.26 K jcn_only_AA ND23 chr3R - chr3R_11662005_11662076 chr3R_11662009_11662076 chr3R_11662077_11662145;chr3R_11661940_11662004 100.00 100.00 100.00 99.61 100.00 100.00 100.00 100.00 99.81 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.47 100.00 100.00 100.00 99.75 100.00 100.00 100.00 100.00 100.00 100.00 99.52 100.00 100.00 100.00 99.70 100.00 99.13 100.00 99.68 100.00 100.00 100.00 100.00 100.00 100.00 99.49 100.00 99.75 100.00 99.67 100.00 99.77 100.00 99.75 100.00 99.59 100.00 99.87 100.00 K jcn_only_AA gro chr3R + chr3R_21870349_21871196;chr3R_21870349_21871190 chr3R_21870349_21870725 chr3R_21870166_21870348 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention nbs chr3L - chr3L_9713666_9713725 chr3L_9713665_9713666;chr3L_9713725_9713726 chr3L_9713514_9713665;chr3L_9713726_9715260 9.09 NA 14.29 11.11 NA NA 4.55 9.09 22.22 NA NA 8.70 NA NA NA 11.76 NA NA 9.09 9.09 NA NA 0.00 0.00 NA 25.00 0.00 NA 6.67 NA 10.00 NA 14.29 15.00 0.00 0.00 NA NA NA 6.67 0.00 10.34 14.29 NA NA 5.56 16.67 14.29 7.69 13.04 0.00 NA NA NA 9.09 5.56 15.79 9.52 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814174;chr2R_2814327_2814894;chr2R_2815657_2816013;chr2R_2816342_2816577;chr2R_2816779_2817327;chr2R_2817604_2817753 chr2R_2814175_2814326;chr2R_2814895_2815656;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817328_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette Arf102F,RI_chr4_1144958_1145393,I_chr4_1152220_1152710,I_chr4_1152585_1152687 chr4 + chr4_1144958_1145393 chr4_1144958_1145061;chr4_1145325_1145393 chr4_1145062_1145324 chr4_1144858_1144957;chr4_1145394_1145493 100.00 100.00 100.00 95.67 100.00 98.97 99.52 98.35 98.53 100.00 100.00 98.59 100.00 99.11 100.00 100.00 99.02 100.00 100.00 100.00 100.00 100.00 100.00 99.01 100.00 96.26 100.00 100.00 98.44 100.00 100.00 100.00 100.00 100.00 100.00 98.88 100.00 100.00 98.81 99.19 100.00 99.55 100.00 100.00 100.00 100.00 99.07 100.00 100.00 100.00 99.15 100.00 98.78 98.92 100.00 99.00 100.00 100.00 K intron_retention bur,F_chr2L_21175660_21175736,I_chr2L_21177679_21178250,I_chr2L_21177960_21179329 chr2L - chr2L_21175682_21175740 chr2L_21175681_21175682;chr2L_21175740_21175741 chr2L_21175280_21175681;chr2L_21175741_21175836 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG17665 chr2R - chr2R_126662_130265 chr2R_126662_129593;chr2R_130205_130265 chr2R_129594_130204 chr2R_126199_126661;chr2R_130266_130352 100.00 100.00 100.00 98.90 100.00 100.00 100.00 99.07 100.00 100.00 100.00 98.86 100.00 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 94.44 100.00 97.30 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 98.96 100.00 89.47 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_donor CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806824_22807254;chr3R_22806725_22807254;chr3R_22806454_22807254 chr3R_22806425_22807254 chr3R_22807255_22807473;chr3R_22806325_22806424 61.36 57.14 65.00 63.39 54.41 69.59 61.62 67.72 61.59 39.13 56.78 44.33 65.09 71.43 62.57 69.04 57.46 68.61 64.56 70.90 63.43 59.09 63.30 59.49 59.68 70.00 38.60 23.53 47.50 48.89 64.29 56.72 47.83 67.54 63.74 53.33 52.78 65.12 48.98 48.60 59.32 69.74 69.27 52.38 61.36 51.19 63.08 52.69 63.48 46.67 61.48 57.14 74.14 60.00 67.80 60.71 56.58 69.72 K alternative_donor None chrU - chrU_5771599_5771684;chrU_5771599_5771693 chrU_5771599_5771833 3.92 3.47 2.27 2.72 3.96 5.00 5.47 4.12 3.56 3.17 1.25 3.85 4.55 3.92 1.37 2.04 1.10 2.83 1.87 3.54 1.28 2.79 10.50 5.52 5.79 3.12 3.65 4.23 6.35 2.94 2.53 2.88 4.33 3.98 4.88 7.45 4.35 4.90 5.63 5.65 2.19 4.80 3.12 3.03 3.56 4.38 4.15 2.80 4.02 6.54 4.59 5.66 1.48 3.98 2.82 6.31 6.28 2.46 K intron_retention cv-c,RI_chr3R_10258928_10265129,RI_chr3R_10301040_10306363,noncoding_16722,RI_chr3R_10306635_10307255 chr3R - chr3R_10306635_10307301 chr3R_10306634_10306635;chr3R_10307301_10307302 chr3R_10306535_10306634;chr3R_10307302_10307304 50.00 NA NA 50.00 NA NA NA 52.94 66.67 NA NA NA NA NA NA 22.58 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA K jcn_only_AA Ptp10D,CEF_chrX_11516219_11517862,I_chrX_11516225_11516345 chrX + chrX_11561013_11562271 chrX_11561013_11561229 chrX_11560731_11561012 79.17 NA NA 79.17 NA NA NA NA 78.26 NA NA 74.29 NA NA NA NA NA NA NA 68.00 NA 73.33 74.19 85.00 NA NA NA NA NA NA NA NA NA 75.00 NA NA 70.59 90.91 NA 92.00 NA 79.31 NA 90.48 NA NA NA NA 80.77 NA 90.91 NA NA NA NA NA NA NA K intron_retention CG10137,CG33116 chr2L + chr2L_19532313_19532365 chr2L_19532312_19532313;chr2L_19532365_19532366 chr2L_19532167_19532312;chr2L_19532366_19532467 0.00 0.00 0.00 4.35 0.00 0.00 NA 0.00 0.00 NA NA 3.57 NA 0.00 0.00 0.00 NA 0.00 0.00 1.47 0.00 0.00 0.00 3.45 0.00 0.00 0.00 NA NA 0.00 3.57 0.00 0.00 0.00 0.00 7.14 3.03 NA 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention CG5850,I_chr2L_9963013_9963451 chr2L - chr2L_9961618_9961794 chr2L_9961617_9961618;chr2L_9961794_9961795 chr2L_9961359_9961617;chr2L_9961795_9962059 100.00 100.00 100.00 98.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.21 99.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.24 100.00 100.00 100.00 100.00 100.00 98.36 100.00 100.00 100.00 100.00 98.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG3760,CG3770,CG12851 chr2R + chr2R_20826741_20826796 chr2R_20826740_20826741;chr2R_20826796_20826797 chr2R_20826672_20826740;chr2R_20826797_20826860 0.00 NA NA NA NA NA NA 0.00 4.35 NA NA 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 17.65 36.36 NA NA NA NA 0.00 NA 0.00 NA 0.00 NA 0.00 NA 7.69 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 K jcn_only_AD CG5484 chr3R + chr3R_22543722_22544049;chr3R_22543734_22544049 chr3R_22543749_22544049 chr3R_22544050_22544588;chr3R_22543570_22543721 0.00 0.00 0.00 0.76 0.00 0.00 0.76 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.84 3.03 0.00 0.00 0.00 0.00 0.00 0.00 1.42 1.61 1.30 1.30 2.67 0.00 1.23 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.98 0.83 0.00 0.88 0.00 0.56 0.00 0.00 2.60 2.67 0.88 0.00 0.67 1.08 0.00 0.00 2.17 0.00 0.00 0.00 0.00 1.23 K intron_retention Ubi-p5E,E_chrX_6171360_6172728,E_chrX_6171636_6173159,E_chrX_6172320_6173159,I_chrX_6172787_6172907 chrX - chrX_6172787_6173168 chrX_6172786_6172787;chrX_6173168_6173169 chrX_6172734_6172786;chrX_6173169_6173259 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.36 0.36 0.31 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.43 0.86 1.28 0.36 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Rbcn-3A chrX - chrX_6137544_6137622 chrX_6137544_6137619 chrX_6137187_6137543;chrX_6137623_6137847 0.44 0.00 0.68 0.92 0.74 1.87 1.16 0.49 0.76 2.22 0.85 0.49 0.00 1.74 2.04 1.49 0.00 1.61 0.00 0.36 0.00 0.81 0.43 0.00 2.56 0.61 0.98 0.00 0.00 0.57 0.71 0.00 0.00 0.00 0.00 1.16 1.65 1.43 0.49 0.81 0.00 0.42 0.96 0.00 0.00 1.27 0.00 0.66 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpS3A,I_chr4_87364_87465,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87365_87465 chr4_87364_87365;chr4_87465_87466 chr4_86731_87364;chr4_87466_87532 0.06 0.08 0.06 0.07 0.00 0.11 0.03 0.07 0.08 0.00 0.00 0.10 0.03 0.14 0.05 0.12 0.06 0.00 0.06 0.04 0.00 0.06 0.14 0.06 0.03 0.03 0.09 0.10 0.05 0.08 0.03 0.04 0.00 0.08 0.17 0.06 0.00 0.00 0.04 0.07 0.00 0.09 0.00 0.12 0.00 0.04 0.09 0.11 0.08 0.07 0.08 0.10 0.06 0.00 0.04 0.08 0.06 0.03 K intron_retention CycD,I_chrX_15803256_15803313 chrX - chrX_15803256_15803563 chrX_15803255_15803256;chrX_15803563_15803564 chrX_15803156_15803255;chrX_15803564_15803677 26.20 41.18 40.00 34.29 NA 40.00 42.86 22.03 37.50 27.27 NA 18.37 35.29 27.27 27.27 20.34 40.00 21.05 40.00 25.00 45.45 30.77 30.30 13.04 46.15 53.33 37.50 NA 40.00 NA 22.22 20.00 33.33 23.08 26.09 30.00 NA 29.41 23.53 23.53 36.84 25.58 40.00 18.18 15.79 13.79 14.29 15.15 24.53 26.32 20.69 29.41 10.53 21.05 22.73 13.04 21.05 25.00 N mutually_exclusive crol,I_chr2L_11799403_11802904 chr2L - chr2L_11799403_11802370,chr2L_11803675_11803784 chr2L_11799403_11800154,chr2L_11800323_11803784 chr2L_11802371_11803674 chr2L_11800155_11800322 chr2L_11799303_11799402;chr2L_11803785_11803898 0.00 0.00 NA 92.31 NA 0.00 NA 90.00 88.89 0.00 NA 0.00 0.00 NA 90.00 NA NA NA NA 91.67 0.00 90.48 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 85.71 77.78 75.00 90.00 0.00 0.00 83.33 0.00 0.00 0.00 0.00 0.00 72.73 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention skpA chrX + chrX_550523_551131 chrX_550522_550523;chrX_551131_551132 chrX_550493_550522;chrX_551132_551937 10.75 9.41 10.53 17.97 10.00 8.57 15.38 13.64 9.46 2.90 9.30 10.24 7.37 6.15 8.43 10.67 13.24 22.62 14.12 12.15 11.11 6.49 8.33 10.28 10.53 11.11 10.00 7.41 19.53 10.75 11.93 10.26 12.93 15.08 12.77 16.84 5.48 7.27 8.26 8.57 15.29 12.59 12.70 7.50 7.41 15.67 11.65 16.13 14.84 10.78 11.11 8.57 15.73 6.45 11.21 7.03 13.08 18.75 K cassette Anxb11,I_chrX_16314152_16315813 chrX - chrX_16313083_16314082 chrX_16313083_16313236;chrX_16313804_16314082 chrX_16313237_16313803 chrX_16312701_16313082;chrX_16314083_16314148 53.91 47.13 47.96 34.69 43.08 48.61 48.81 40.00 47.30 59.62 41.18 56.71 31.11 43.55 37.89 48.57 39.39 72.46 35.06 54.73 40.62 91.50 53.91 50.50 61.29 43.08 57.32 61.43 78.75 77.11 44.57 73.44 83.00 46.55 57.58 56.14 62.00 48.94 66.37 63.23 80.85 51.80 41.07 58.23 76.61 65.96 63.33 75.82 55.20 57.36 56.99 42.86 62.07 53.23 41.84 44.44 50.00 75.56 K alternative_donor Hel25E,I_chr2L_5540301_5540396 chr2L - chr2L_5540301_5540424;chr2L_5540301_5540396 chr2L_5540301_5540971 chr2L_5540201_5540300;chr2L_5540972_5541090 92.31 95.01 92.40 94.10 95.72 95.12 90.75 93.64 94.47 84.86 94.91 94.87 91.49 93.49 94.29 90.53 92.78 94.54 93.60 95.13 94.02 88.51 91.80 90.59 89.24 94.62 88.42 86.44 88.19 93.25 74.75 86.00 83.00 92.54 91.67 88.92 91.59 94.03 93.43 87.29 77.84 94.03 93.01 88.11 91.15 89.78 92.29 77.84 93.60 91.49 91.91 92.51 92.31 92.96 94.82 92.00 93.86 84.17 K intron_retention Pms2,I_chr2R_11257708_11257764 chr2R - chr2R_11258545_11258601 chr2R_11258544_11258545;chr2R_11258601_11258602 chr2R_11258405_11258544;chr2R_11258602_11258761 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA 4.76 NA 7.14 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 10.71 0.00 NA 0.00 0.00 NA NA 3.77 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 K intron_retention CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5043017_5043077 chr2L_5043016_5043017;chr2L_5043077_5043078 chr2L_5042984_5043016;chr2L_5043078_5043083 97.06 98.15 92.73 98.48 100.00 100.00 95.35 96.00 98.18 100.00 96.97 96.19 89.66 97.87 96.15 95.19 97.44 97.50 98.11 96.90 90.48 92.86 98.00 97.44 100.00 98.08 96.23 96.15 96.00 100.00 97.92 94.12 88.89 94.38 100.00 97.30 96.08 96.88 97.62 100.00 100.00 96.25 94.59 98.44 96.55 95.74 95.56 100.00 96.74 92.86 97.92 100.00 97.06 97.14 96.36 97.56 89.13 100.00 K alternative_donor crol,I_chr2L_11799403_11802904 chr2L - chr2L_11800323_11802370;chr2L_11800323_11802286;chr2L_11800323_11802343 chr2L_11800323_11802904 chr2L_11800155_11800322;chr2L_11802905_11803004 4.90 4.24 5.75 7.83 3.04 3.60 2.41 3.86 2.75 7.39 2.73 5.44 3.66 2.96 5.15 3.48 3.93 4.13 3.57 6.78 4.12 16.89 6.63 5.72 6.55 5.16 6.25 14.99 5.30 4.90 3.38 3.85 5.92 3.47 3.87 6.27 5.26 6.20 4.56 6.32 5.91 4.26 4.40 2.79 4.67 8.33 5.02 5.42 5.23 5.06 5.66 6.79 3.72 6.86 4.74 3.94 2.70 3.33 K alternative_donor gd,I_chrX_11881464_11881506 chrX - chrX_11881004_11881082 chrX_11881004_11881064 chrX_11880452_11881003;chrX_11881083_11881239 74.44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 63.16 NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG41099,R_chr3RHet_1688501_1702556,I_chr3RHet_1688505_1705884,RI_chr3RHet_1703294_1705884 chr3RHet - chr3RHet_1688505_1705901;chr3RHet_1688505_1705884 chr3RHet_1688505_1702560;chr3RHet_1703298_1705901,chr3RHet_1703298_1705884 chr3RHet_1702561_1703297 chr3RHet_1688405_1688504;chr3RHet_1705902_1705984 100.00 100.00 100.00 98.33 100.00 100.00 100.00 98.89 100.00 100.00 100.00 100.00 100.00 97.44 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 K alternative_acceptor CG3635 chr2L + chr2L_22183467_22183599;chr2L_22183467_22183527 chr2L_22183467_22183607 chr2L_22183394_22183466;chr2L_22183608_22183915 51.60 54.96 62.10 64.71 54.67 54.02 37.36 59.26 51.68 40.00 56.52 49.24 53.85 45.05 60.31 51.97 54.74 58.42 54.13 50.57 55.67 62.50 59.48 48.75 40.23 53.25 58.08 53.49 37.14 51.61 51.59 43.86 59.42 53.21 55.14 31.82 37.98 45.97 49.06 44.19 42.54 55.65 61.43 37.02 53.06 42.42 43.68 40.61 50.97 55.80 44.94 38.67 46.56 46.02 49.57 45.71 51.60 47.13 K jcn_only_AD E2f,I_chr3R_17452573_17458606,R_chr3R_17452574_17485937,CG6353 chr3R - chr3R_17452573_17458645 chr3R_17452573_17457854 chr3R_17452474_17452572;chr3R_17458646_17458706 79.29 76.81 82.09 79.29 73.68 73.58 81.29 77.04 77.69 97.62 87.10 81.21 82.29 76.19 76.19 86.03 77.78 77.38 73.73 73.42 81.97 57.14 78.05 84.85 86.79 78.22 80.90 70.83 85.37 67.33 78.41 85.71 72.52 76.96 75.31 93.42 87.88 76.60 85.48 85.32 80.17 82.94 85.71 90.00 75.93 81.25 78.85 83.64 74.11 87.50 80.91 72.22 79.49 65.22 80.33 77.59 78.43 81.30 K intron_retention rok,RI_chrX_16526333_16526477 chrX - chrX_16520281_16520602 chrX_16520280_16520281;chrX_16520602_16520603 chrX_16519712_16520280;chrX_16520603_16520827 26.47 28.99 30.14 12.63 32.65 38.81 63.29 30.68 27.01 45.61 26.47 21.84 29.63 24.44 19.40 17.46 21.28 20.37 31.03 32.85 17.65 51.96 27.20 22.62 28.57 34.04 16.33 26.09 19.40 22.55 35.09 44.44 34.31 23.36 22.41 19.44 22.81 18.89 21.09 33.09 34.55 26.14 17.78 20.19 25.64 27.87 22.64 32.63 27.72 26.32 29.55 27.03 29.55 29.73 25.40 22.03 22.22 29.17 K intron_retention CG8963,I_chr2R_12906431_12906583,I_chr2R_12906930_12906989 chr2R - chr2R_12906827_12906937 chr2R_12906826_12906827;chr2R_12906937_12906938 chr2R_12906712_12906826;chr2R_12906938_12907019 50.00 35.29 52.17 26.53 56.25 56.52 44.44 51.35 50.00 73.33 55.00 45.65 35.71 37.93 54.17 37.50 41.18 35.29 37.50 39.58 47.06 60.71 40.54 40.91 85.00 62.50 72.00 44.44 57.14 46.15 51.72 50.00 44.00 39.02 41.18 48.15 52.38 30.00 68.42 47.62 81.25 55.56 52.63 51.85 64.71 69.57 41.38 74.29 50.00 45.00 50.00 29.41 50.00 NA 52.38 50.00 42.86 53.12 K cassette RpL3,E_chr3R_7047964_7050565,I_chr3R_7048451_7049116,I_chr3R_7048452_7049579,I_chr3R_7049970_7050189 chr3R + chr3R_7048452_7049579 chr3R_7048452_7049116;chr3R_7049253_7049579 chr3R_7049117_7049252 chr3R_7048352_7048451;chr3R_7049580_7049679 99.96 100.00 100.00 99.86 100.00 99.96 99.97 99.98 99.98 99.95 100.00 99.93 99.96 99.95 99.97 99.97 99.96 99.96 99.89 99.97 99.91 99.87 100.00 99.89 99.90 99.96 99.97 100.00 98.49 99.96 99.84 99.96 99.96 99.98 99.95 99.88 99.98 99.96 99.98 99.90 100.00 99.93 99.96 99.94 99.88 99.97 99.98 99.84 99.92 99.94 100.00 99.95 99.98 100.00 99.94 99.94 99.98 99.98 K alternative_last_exon Mvl,E_chr3R_16880765_16881066 chr3R - chr3R_16878968_16881066,chr3R_16879341_16881066;chr3R_16880764_16881066;chr3R_16877965_16881066 chr3R_16879657_16881066 chr3R_16878926_16878967;chr3R_16880370_16880763;chr3R_16877097_16877964 chr3R_16879584_16879656 chr3R_16881067_16881137 0.00 0.00 0.00 0.00 0.00 0.00 1.33 1.90 0.83 0.00 0.00 2.30 3.57 2.00 0.00 2.53 4.76 0.00 1.75 0.96 0.00 0.00 1.64 0.00 0.00 2.63 0.00 0.00 0.00 3.70 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.97 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 4.65 3.28 0.00 2.67 0.00 K intron_retention CG32809,I_chrX_1576815_1577129,I_chrX_1577031_1577129,CEI_chrX_1579569_1579679,RI_chrX_1585391_1586471,I_chrX_1589508_1589564 chrX - chrX_1571099_1571167 chrX_1571098_1571099;chrX_1571167_1571168 chrX_1570956_1571098;chrX_1571168_1571350 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.38 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.13 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 K cassette CG9238 chr3L - chr3L_14540583_14543636 chr3L_14540583_14543097;chr3L_14543260_14543636 chr3L_14543098_14543259 chr3L_14540217_14540582;chr3L_14543637_14544043 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 83.33 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG7427 chr3L + chr3L_15556620_15556707 chr3L_15556619_15556620;chr3L_15556707_15556708 chr3L_15556601_15556619;chr3L_15556708_15556829 95.83 100.00 90.91 94.74 NA NA 100.00 95.83 85.19 NA 100.00 95.83 91.67 100.00 88.89 96.00 90.91 88.89 100.00 94.74 100.00 77.78 90.91 NA NA NA 100.00 NA NA NA 100.00 NA NA 95.24 NA NA NA 100.00 NA 90.91 NA 95.00 100.00 NA NA 87.50 NA NA 95.83 100.00 100.00 100.00 NA NA 90.91 NA 92.31 NA K alternative_acceptor CG6179,RI_chrX_18274964_18275006 chrX + chrX_18274964_18275023 chrX_18274964_18275006 chrX_18274864_18274963;chrX_18275024_18275106 0.00 2.86 0.00 3.45 0.00 0.00 0.00 4.35 0.00 0.00 0.00 2.13 0.00 NA 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 2.38 1.82 0.00 NA 0.00 0.00 10.34 0.00 0.00 3.85 0.00 0.00 0.00 2.78 0.00 0.00 0.00 5.26 4.76 2.00 0.00 0.00 5.00 2.44 0.00 0.00 2.00 0.00 2.17 0.00 1.82 4.17 0.00 0.00 2.47 0.00 K intron_retention mys,I_chrX_7958795_7961094 chrX + chrX_7959566_7960130 chrX_7959565_7959566;chrX_7960130_7960131 chrX_7959481_7959565;chrX_7960131_7960143 93.54 NA 92.31 93.33 100.00 100.00 100.00 96.00 97.14 NA NA 100.00 100.00 93.75 100.00 100.00 92.86 90.00 92.31 92.59 NA 78.57 NA 90.91 88.89 100.00 NA NA 88.89 88.89 54.17 NA NA 96.67 100.00 88.89 NA NA 87.50 93.75 NA 91.30 100.00 NA NA 100.00 NA NA 96.30 NA 78.57 NA NA NA 90.48 NA NA NA K intron_retention Dif,dorsal,RI_chr2L_17438018_17439189,I_chr2L_17442335_17442399,FI_chr2L_17449369_17450215,noncoding_3500,RI_chr2L_17450002_17450219 chr2L - chr2L_17439298_17441800 chr2L_17439297_17439298;chr2L_17441800_17441801 chr2L_17439190_17439297;chr2L_17441801_17441879 22.86 19.35 22.41 32.50 27.08 36.59 57.14 33.78 17.59 34.15 29.63 17.98 47.83 23.40 22.86 36.51 28.21 19.15 22.45 25.58 35.29 12.95 18.40 22.22 25.40 31.82 33.72 39.73 22.45 27.78 28.57 15.69 27.72 24.73 23.29 62.12 15.53 17.39 16.03 23.97 21.54 25.23 33.33 17.39 17.57 19.23 11.63 25.76 22.81 15.18 19.63 22.03 10.59 12.50 25.68 12.10 16.51 15.29 N alternative_acceptor CG17119,sav chr3R - chr3R_18880054_18880450 chr3R_18880351_18880450 chr3R_18880451_18880553;chr3R_18880008_18880053 100.00 100.00 100.00 90.53 79.07 100.00 85.71 91.95 92.68 100.00 76.32 100.00 100.00 100.00 100.00 89.02 80.43 100.00 100.00 100.00 100.00 100.00 86.32 92.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.31 100.00 92.59 100.00 100.00 100.00 91.46 100.00 100.00 89.57 91.95 100.00 100.00 100.00 100.00 90.48 83.87 86.05 85.00 K jcn_only_AA tsh,I_chr2L_21829859_21830276 chr2L + chr2L_21829859_21833370 chr2L_21829859_21830276 chr2L_21829759_21829858;chr2L_21833371_21833470 0.00 0.00 0.00 0.00 2.17 4.17 5.88 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 1.41 0.00 11.76 0.00 1.09 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 2.44 0.00 0.00 0.00 1.82 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor cryptocephal,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21318417_21318484 chr2L_21318420_21318484 chr2L_21318485_21318548;chr2L_21318351_21318416 90.15 89.36 88.13 91.52 91.64 88.59 91.98 90.06 90.39 89.37 92.11 89.87 89.97 91.72 90.53 90.03 88.08 89.00 90.91 91.87 91.24 87.88 92.38 89.83 89.89 89.96 89.98 79.40 91.19 88.71 91.25 89.03 88.19 92.22 91.24 90.61 89.90 91.24 90.83 89.63 88.85 91.84 86.33 91.52 90.15 90.38 91.82 88.78 89.89 92.20 91.39 90.61 87.50 92.75 90.70 93.23 89.66 88.03 K intron_retention wge chr3R - chr3R_18542354_18542655 chr3R_18542353_18542354;chr3R_18542655_18542656 chr3R_18540256_18542353;chr3R_18542656_18542685 23.30 17.24 30.77 40.00 25.00 NA 66.67 35.29 23.08 4.76 NA 29.17 NA 41.67 23.53 NA NA NA NA 35.48 NA 37.50 13.16 15.56 34.78 NA 26.09 25.00 21.74 28.57 13.04 29.17 16.67 17.39 18.52 57.14 14.29 10.34 18.60 20.00 36.36 25.00 NA 15.38 13.33 25.00 0.00 24.53 21.43 36.36 27.27 NA 0.00 NA 22.22 NA 8.33 9.09 K intron_retention CG8009,CG18628 chr3L + chr3L_10631595_10631653 chr3L_10631594_10631595;chr3L_10631653_10631654 chr3L_10631534_10631594;chr3L_10631654_10631800 0.00 0.00 NA NA NA NA NA NA NA NA NA 8.70 NA NA NA NA NA NA NA NA NA NA 11.11 0.00 NA NA NA NA 58.33 NA NA NA NA NA NA NA NA 0.00 0.00 0.00 NA 0.00 NA NA NA 6.25 NA NA NA NA NA NA NA 0.00 NA 0.00 6.25 NA K jcn_only_AA CG8273,CG8301 chr3R + chr3R_5405819_5405880 chr3R_5405819_5405877 chr3R_5403779_5405818;chr3R_5405881_5406947 100.00 NA 100.00 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 96.88 100.00 100.00 NA 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 NA NA 95.00 100.00 100.00 100.00 NA K alternative_last_exon shi,RI_chrX_15786633_15786860,RE_chrX_15793108_15795563 chrX + chrX_15796366_15799806 chrX_15796366_15797822 chrX_15799807_15800799 chrX_15797823_15799280 chrX_15796223_15796365 25.93 20.55 29.23 41.00 21.05 22.81 34.31 43.10 39.74 11.63 30.00 27.97 46.43 39.68 28.00 42.97 31.25 32.61 34.38 30.40 26.67 26.00 25.27 20.27 20.93 28.57 24.62 33.33 15.49 16.87 26.98 12.24 10.92 36.52 23.08 14.29 16.88 24.00 19.72 22.61 10.68 31.67 37.25 27.06 11.65 14.29 17.05 12.86 38.33 26.76 25.93 29.55 17.65 17.46 26.98 17.11 20.00 9.94 K intron_retention CG34376 chr3R + chr3R_18283200_18284042 chr3R_18283199_18283200;chr3R_18284042_18284043 chr3R_18282273_18283199;chr3R_18284043_18284952 7.69 0.00 0.00 7.69 NA NA NA NA 12.50 NA NA 7.14 NA NA NA 0.00 NA NA NA 7.69 NA 8.82 23.81 8.33 0.00 NA 0.00 66.67 10.53 0.00 NA NA 9.68 6.67 7.69 0.00 10.71 NA 5.71 15.79 NA 10.53 NA 18.18 7.41 19.05 10.71 9.09 0.00 5.56 15.15 NA 0.00 11.76 NA NA 0.00 5.26 K intron_retention CG33111,noncoding_18661,I_chr3R_19633752_19633821 chr3R - chr3R_19631843_19632347 chr3R_19631842_19631843;chr3R_19632347_19632348 chr3R_19631781_19631842;chr3R_19632348_19632486 11.93 NA NA 37.50 NA NA NA 18.75 0.00 NA NA 0.00 NA NA NA NA NA NA NA 15.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.33 NA 0.00 NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA K intron_retention CG3287,I_chr2R_2698891_2699406,I_chr2R_2700203_2700285 chr2R + chr2R_2698681_2699406 chr2R_2698680_2698681;chr2R_2699406_2699407 chr2R_2698533_2698680;chr2R_2699407_2699506 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 2.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 4.23 0.00 2.74 2.70 0.00 1.37 2.00 1.37 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 1.91 0.00 0.00 0.00 0.00 0.00 0.00 1.56 1.27 0.00 0.00 1.02 0.00 0.00 0.00 1.09 0.00 0.00 0.93 K intron_retention cni,RI_chr2L_16309575_16309999,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16309931_16309999 chr2L_16309930_16309931;chr2L_16309999_16310000 chr2L_16309602_16309930;chr2L_16310000_16310099 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10462 chr2L - chr2L_19733591_19733638 chr2L_19733590_19733591;chr2L_19733638_19733639 chr2L_19733396_19733590;chr2L_19733639_19734280 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG3609,I_chr2L_2373706_2374488,RI_chr2L_2373723_2374295 chr2L - chr2L_2373723_2374488 chr2L_2373723_2373935 chr2L_2373623_2373722;chr2L_2374489_2374588 3.92 0.00 2.50 5.77 2.38 1.92 12.90 2.44 2.46 9.09 2.33 2.68 6.82 2.38 0.00 3.77 3.12 3.23 3.92 1.80 3.23 8.33 37.50 42.86 NA 2.78 NA NA 20.00 NA 1.67 11.76 8.70 1.72 22.22 NA 20.00 NA NA 15.00 25.00 1.71 2.17 7.14 10.34 17.65 11.11 14.29 3.09 25.00 22.22 NA 0.00 NA 0.00 NA 25.00 11.11 K jcn_only_AA CG9740,RI_chr3R_5083859_5083977,I_chr3R_5083907_5083977 chr3R - chr3R_5083907_5083977;chr3R_5083911_5083977 chr3R_5083859_5083977 chr3R_5083978_5084077;chr3R_5083807_5083858 1.14 0.00 2.50 0.00 0.00 0.00 2.33 0.00 1.20 0.00 4.00 1.41 0.00 0.00 2.17 0.00 0.00 0.00 0.00 1.14 0.00 2.38 1.59 0.00 2.22 0.00 0.00 0.00 0.00 3.03 0.00 2.70 2.27 0.00 0.00 2.38 3.45 1.82 1.14 1.54 0.00 0.00 3.70 0.00 2.56 0.00 3.51 0.00 0.00 1.19 1.41 3.03 2.27 1.85 0.00 1.45 2.67 1.85 N alternative_acceptor CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789733_9789790;chr2L_9789740_9789790;chr2L_9789718_9789790;chr2L_9789751_9789790;chr2L_9789598_9789790 chr2L_9789694_9789790 chr2L_9789791_9789832;chr2L_9789594_9789597 11.48 13.33 11.43 8.14 4.76 13.04 7.69 6.78 6.85 10.53 6.25 7.84 4.55 12.90 11.76 10.00 8.33 12.50 10.34 10.77 6.67 6.90 15.69 19.44 16.13 11.11 21.57 21.74 17.24 19.23 4.44 9.52 13.33 11.76 15.38 55.17 14.29 20.83 13.51 11.48 10.71 7.55 15.38 12.12 20.00 9.09 16.00 10.64 9.52 17.39 15.79 6.90 21.05 33.33 5.41 9.09 18.18 4.00 K cassette tay,RI_chrX_15779977_15780033,I_chrX_15779977_15780538,RI_chrX_15780874_15781045,I_chrX_15783766_15785978 chrX - chrX_15779977_15781045 chrX_15779977_15780033;chrX_15780874_15781045 chrX_15780034_15780873 chrX_15779877_15779976;chrX_15781046_15781068 61.25 50.00 50.00 75.00 NA 33.33 50.00 50.00 58.82 NA 66.67 60.00 83.33 66.67 66.67 60.00 100.00 66.67 50.00 50.00 66.67 50.00 66.67 NA 50.00 50.00 66.67 NA NA 75.00 42.86 NA 66.67 85.71 NA 40.00 NA NA NA 80.00 NA 62.50 100.00 50.00 NA NA NA 57.14 88.89 NA 50.00 66.67 NA NA 50.00 NA NA 66.67 K jcn_only_AD Pi3K92E,I_chr3R_16459436_16459551,I_chr3R_16459436_16459848 chr3R - chr3R_16459436_16459848;chr3R_16459436_16460267;chr3R_16459436_16460287;chr3R_16459436_16459551 chr3R_16459436_16460340 chr3R_16459336_16459435;chr3R_16460341_16460435 9.80 10.81 6.25 19.72 24.00 13.79 6.56 10.29 11.11 0.00 9.52 16.67 9.38 15.25 9.09 20.00 17.50 16.67 9.09 14.29 8.33 13.79 14.49 0.00 0.00 0.00 13.04 3.57 0.00 20.83 14.29 NA 8.33 8.62 11.43 26.92 14.89 9.38 5.56 5.62 5.00 8.45 9.68 9.72 NA 15.38 17.39 2.94 8.33 NA 13.73 15.15 NA NA 9.80 18.18 4.00 NA K alternative_acceptor lwr,RI_chr2L_542347_542429 chr2L - chr2L_542380_542429;chr2L_542351_542429 chr2L_542347_542429 chr2L_542430_542529;chr2L_542247_542346 5.62 6.17 1.54 7.87 4.35 4.84 7.69 5.62 6.93 3.28 1.85 6.98 10.91 3.45 5.33 11.11 6.67 4.11 2.94 6.71 1.82 7.50 5.98 3.03 0.00 7.06 2.82 5.63 3.08 2.78 4.60 8.22 4.88 7.07 5.71 8.06 5.56 2.78 7.69 5.83 1.59 7.03 5.77 1.32 6.80 7.50 4.71 3.19 5.34 7.69 6.82 5.08 1.27 3.30 7.32 3.77 6.76 5.88 K intron_retention CG42574,I_chr3R_618802_618939,I_chr3R_621543_625413,I_chr3R_621546_625413 chr3R - chr3R_620787_621458 chr3R_620786_620787;chr3R_621458_621459 chr3R_618940_620786;chr3R_621459_621472 3.85 6.67 NA 7.69 NA 14.29 3.85 0.00 5.13 0.00 NA 3.92 NA NA 4.35 0.00 NA NA NA 0.00 5.88 14.49 3.70 0.00 0.00 NA 7.41 18.03 9.52 0.00 8.00 NA 0.00 6.25 0.00 0.00 0.00 0.00 2.94 4.65 NA 0.00 NA 0.00 NA NA NA 10.00 9.68 NA 0.00 18.75 0.00 NA 20.00 NA NA NA K alternative_last_exon CG3842 chrX + chrX_6233625_6236095 chrX_6233625_6235092 chrX_6236096_6237819 chrX_6235093_6235376 chrX_6233556_6233624 0.00 NA NA NA NA NA NA 66.67 66.67 NA NA 33.33 NA NA 50.00 NA 50.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 50.00 NA NA 0.00 NA 0.00 0.00 NA 66.67 NA 50.00 0.00 NA 0.00 0.00 NA NA NA NA NA NA 0.00 0.00 0.00 NA K jcn_only_AD CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27044867;chr3R_27044771_27045188;chr3R_27044771_27045257;chr3R_27044771_27045027;chr3R_27044771_27045110;chr3R_27044771_27044831;chr3R_27044771_27044990;chr3R_27044771_27044895 chr3R_27044771_27045132 chr3R_27044671_27044770;chr3R_27045258_27045273 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 K alternative_donor Nacalpha,I_chr2R_8648027_8648303 chr2R - chr2R_8648027_8648305;chr2R_8648027_8648231 chr2R_8648027_8648309 chr2R_8647927_8648026;chr2R_8648310_8648314 25.00 10.00 27.27 8.33 47.06 14.29 10.00 33.33 25.00 NA 25.00 7.14 27.27 16.67 25.00 17.65 12.50 36.36 33.33 31.82 40.00 12.50 7.14 46.15 NA 35.29 11.11 12.50 11.11 0.00 18.75 14.29 25.00 33.33 28.57 NA 25.00 16.67 30.00 2.80 12.50 30.43 10.00 2.38 30.77 20.00 20.00 20.00 28.00 38.46 11.11 33.33 15.56 25.00 37.50 26.67 43.48 30.43 K cassette CG4630,RI_chr2R_9103472_9103634,I_chr2R_9103765_9103852,I_chr2R_9103910_9104108,I_chr2R_9103956_9104108,RI_chr2R_9104206_9104265 chr2R - chr2R_9103765_9104108 chr2R_9103765_9103852;chr2R_9103910_9104108 chr2R_9103853_9103909 chr2R_9103665_9103764;chr2R_9104109_9104202 25.00 9.09 14.29 25.00 NA NA 21.43 28.57 20.00 23.81 NA 25.00 NA NA NA 20.00 NA NA NA 20.83 NA 46.88 14.00 26.47 25.00 NA 25.00 20.00 55.00 19.05 37.50 33.33 29.41 25.00 26.32 20.00 21.57 20.00 26.83 32.35 57.14 19.23 NA 33.33 21.05 28.57 17.14 40.00 NA 21.43 NA 20.00 NA 22.73 27.27 25.00 17.65 NA K alternative_last_exon CG34376 chr3R + chr3R_18283200_18283300;chr3R_18283200_18285563 chr3R_18283200_18284042 chr3R_18285564_18286455 chr3R_18284043_18285254 chr3R_18282273_18283199 80.49 83.87 82.61 69.70 86.67 86.67 78.95 77.27 81.25 76.19 76.92 86.11 72.73 85.71 88.89 73.91 84.62 66.67 80.00 76.74 81.25 76.67 79.59 82.05 84.00 81.25 86.67 86.67 69.23 73.17 85.71 75.86 70.59 74.07 80.77 92.86 86.54 82.35 81.13 85.42 74.19 86.11 78.57 80.00 82.98 76.74 77.08 78.95 85.29 69.39 77.50 78.95 86.11 84.38 80.95 80.00 80.49 78.72 K intron_retention Pitslre,I_chr3L_20764965_20765781,I_chr3L_20764965_20766192,I_chr3L_20764965_20766212,I_chr3L_20766064_20766192,I_chr3L_20766064_20766215,RI_chr3L_20766064_20766893,I_chr3L_20766311_20766664,I_chr3L_20766311_20766893,I_chr3L_20766773_20766893 chr3L + chr3L_20764709_20766893 chr3L_20764708_20764709;chr3L_20766893_20766894 chr3L_20764640_20764708;chr3L_20766894_20766993 100.00 100.00 100.00 100.00 91.67 90.91 100.00 96.15 97.14 NA 100.00 100.00 100.00 100.00 92.86 100.00 100.00 93.75 95.24 96.77 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 95.45 NA 91.67 100.00 K intron_retention CG4400 chrX - chrX_12802722_12802968 chrX_12802721_12802722;chrX_12802968_12802969 chrX_12802007_12802721;chrX_12802969_12803213 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 1.63 2.82 0.00 0.00 0.00 0.78 0.00 0.60 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.81 0.00 0.00 0.91 0.00 0.00 0.00 0.00 K alternative_donor RpS16,RI_chr2R_18493796_18494013,I_chr2R_18494146_18494441 chr2R + chr2R_18493794_18494013 chr2R_18493796_18494013 chr2R_18494014_18494064;chr2R_18493752_18493793 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.01 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.02 0.02 0.02 0.05 0.08 0.00 0.03 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.04 0.05 0.02 0.05 0.02 0.00 0.02 0.00 0.00 0.02 0.00 0.04 0.02 0.04 0.09 0.01 0.02 0.00 0.02 0.02 0.00 K jcn_only_AD l(2)05714,RI_chr2L_4970785_4971075,CRE_chr2L_4970785_4971082,I_chr2L_4970785_4973718,RI_chr2L_4971343_4973718 chr2L - chr2L_4970785_4973718;chr2L_4970785_4971053 chr2L_4970785_4971086 chr2L_4970685_4970784;chr2L_4973719_4973787 88.46 91.18 86.67 87.23 96.30 76.19 90.70 87.76 89.19 NA 88.46 89.71 89.29 96.77 90.24 91.67 NA 76.32 87.10 83.78 81.48 88.46 94.34 93.02 92.31 91.18 89.19 NA 81.82 87.88 92.00 64.52 93.94 78.72 92.86 82.05 89.58 80.56 95.35 75.00 87.27 86.67 80.00 84.09 84.38 79.49 90.91 80.00 87.50 90.91 85.42 88.46 92.00 89.66 81.82 85.00 96.20 93.33 K intron_retention CG3534 chr3R + chr3R_12824295_12824508 chr3R_12824294_12824295;chr3R_12824508_12824509 chr3R_12824073_12824294;chr3R_12824509_12824698 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 8.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD rudimentary,I_chrX_16559455_16560067,I_chrX_16561903_16561969 chrX + chrX_16559361_16560067 chrX_16559455_16560067 chrX_16560068_16560167;chrX_16559355_16559360 4.04 5.41 4.92 2.04 0.00 3.57 1.92 9.23 4.04 3.12 9.52 11.11 2.33 4.44 6.25 6.45 0.00 9.30 6.06 2.33 8.82 4.93 3.82 0.85 3.28 7.69 2.70 0.00 25.00 7.53 26.79 0.00 2.45 3.75 6.15 6.94 0.00 6.58 1.39 8.04 0.00 4.55 2.38 1.67 4.71 5.71 3.37 8.64 5.75 5.00 3.97 2.50 4.26 2.27 3.03 8.24 0.73 0.86 K jcn_only_AA CG18605 chr2R + chr2R_14865147_14865327 chr2R_14865147_14865248 chr2R_14865024_14865146;chr2R_14865328_14865445 84.50 NA NA 85.00 NA NA NA NA 83.33 NA NA 84.00 NA NA NA 92.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor RhoGAP19D,EI_chrX_20347839_20348139,DMG4-MB6.chrX.37.001,RI_chrX_20380495_20381649 chrX - chrX_20347836_20348139 chrX_20347839_20348139 chrX_20348140_20348214;chrX_20347739_20347835 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG11006,F_chr3L_12799159_12799339 chr3L + chr3L_12804689_12804747;chr3L_12804689_12804774 chr3L_12804689_12804777 chr3L_12803828_12804688;chr3L_12804778_12804986 23.40 41.30 23.40 13.11 35.00 31.25 28.95 25.93 21.33 37.50 18.75 20.00 13.04 27.50 21.05 17.78 24.14 20.00 18.42 28.77 30.00 16.90 20.00 22.86 18.75 16.67 24.00 22.50 26.53 28.81 21.62 26.42 20.00 12.00 7.69 16.67 37.50 29.41 33.82 26.32 17.39 25.00 21.21 40.00 18.75 31.11 26.09 27.27 9.46 31.67 31.37 9.09 34.38 27.27 18.75 27.66 22.64 21.88 K cassette janA,RI_chr3R_25864678_25864966,I_chr3R_25864692_25864783,I_chr3R_25871509_25871807 chr3R - chr3R_25864678_25864966 chr3R_25864678_25864783;chr3R_25864909_25864966 chr3R_25864784_25864908 chr3R_25864592_25864677;chr3R_25864967_25865066 95.71 94.90 93.27 90.82 100.00 96.15 93.33 97.63 97.14 96.26 92.05 94.74 92.75 92.31 92.48 97.79 94.94 94.74 94.74 95.76 92.13 92.41 97.38 96.41 93.07 95.15 96.83 100.00 94.27 97.26 91.78 96.82 97.24 94.83 94.66 95.71 97.66 95.14 94.74 97.20 95.02 97.37 95.40 98.66 97.68 97.51 96.39 97.18 92.35 94.37 95.07 96.04 98.03 97.66 97.30 96.70 94.82 97.47 K jcn_only_AA RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12922514_12922850;chr2R_12922514_12923162 chr2R_12922514_12923159 chr2R_12922340_12922513;chr2R_12923163_12923912 0.00 0.00 3.45 0.00 0.00 12.90 4.08 0.00 0.00 3.57 NA 0.00 0.00 3.33 0.00 0.00 0.00 0.00 3.70 2.00 NA 0.00 0.00 4.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 NA 1.37 1.52 0.00 2.44 0.00 0.00 0.00 3.06 0.00 1.35 0.00 0.00 4.76 0.00 5.00 0.00 0.00 0.00 1.67 0.00 0.00 NA 0.00 NA 0.00 2.44 K intron_retention lok,RI_chr2L_20063248_20063377 chr2L + chr2L_20062654_20062733 chr2L_20062653_20062654;chr2L_20062733_20062734 chr2L_20062545_20062653;chr2L_20062734_20063171 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.33 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Chro,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22871326_22871733 chr3L_22871351_22871733 chr3L_22871734_22871779;chr3L_22871251_22871325 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N cassette C1GalTA,I_chr2L_8945896_8950977 chr2L - chr2L_8945123_8950977 chr2L_8945123_8945357;chr2L_8945535_8950977 chr2L_8945358_8945534 chr2L_8944233_8945122;chr2L_8950978_8951077 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG12734,I_chr3L_3183812_3183932,I_chr3L_3184645_3185360 chr3L + chr3L_3183998_3184251 chr3L_3184038_3184251 chr3L_3184252_3184644;chr3L_3183933_3183997 95.24 90.48 NA 81.25 80.00 100.00 100.00 92.86 95.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 89.47 95.00 100.00 90.00 NA 95.24 92.86 100.00 90.00 100.00 90.00 93.75 100.00 94.44 92.31 88.46 94.44 96.67 75.00 91.67 95.45 85.71 100.00 92.86 87.50 100.00 93.33 100.00 93.75 96.00 100.00 91.67 93.75 100.00 100.00 83.33 100.00 K intron_retention ena chr2R + chr2R_15029330_15029711 chr2R_15029329_15029330;chr2R_15029711_15029712 chr2R_15029324_15029329;chr2R_15029712_15029859 100.00 100.00 100.00 98.00 95.65 96.15 100.00 100.00 98.80 100.00 100.00 98.55 97.06 97.14 93.75 97.96 100.00 100.00 98.08 97.92 95.83 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 85.71 100.00 100.00 90.91 98.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 95.65 NA 90.91 100.00 100.00 100.00 100.00 96.00 93.75 100.00 NA 100.00 94.44 100.00 NA K intron_retention SCAP,CG14591 chr2R - chr2R_1914775_1914830 chr2R_1914774_1914775;chr2R_1914830_1914831 chr2R_1914420_1914774;chr2R_1914831_1915033 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Vps35,I_chr2R_18073728_18074021,RI_chr2R_18074210_18074272 chr2R + chr2R_18074210_18074272 chr2R_18074212_18074272 chr2R_18074273_18074372;chr2R_18074110_18074209 100.00 100.00 100.00 99.43 100.00 100.00 100.00 100.00 99.54 100.00 100.00 99.44 100.00 100.00 100.00 99.08 100.00 98.72 100.00 99.42 100.00 100.00 100.00 100.00 100.00 100.00 98.32 100.00 100.00 100.00 100.00 100.00 100.00 98.58 100.00 100.00 100.00 98.82 99.09 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 100.00 99.22 97.30 99.32 100.00 96.72 100.00 100.00 100.00 100.00 100.00 K intron_retention Arp14D,RI_chrX_16444583_16446372,I_chrX_16444630_16446372,RE_chrX_16445264_16446372 chrX - chrX_16444630_16446372 chrX_16444629_16444630;chrX_16446372_16446373 chrX_16444600_16444629;chrX_16446373_16446472 90.00 NA NA NA NA NA 92.86 87.50 90.00 NA NA 100.00 88.89 NA NA 100.00 NA NA NA 100.00 NA 31.25 90.00 NA 90.00 NA NA NA 54.55 NA NA NA NA NA NA 70.00 66.67 NA NA 92.86 77.78 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA N jcn_only_AA vir-1,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,noncoding_2764,I_chr2L_12421830_12423260 chr2L - chr2L_12421862_12423322;chr2L_12421902_12423322 chr2L_12421830_12423322 chr2L_12423323_12423328;chr2L_12421816_12421829 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.92 100.00 100.00 100.00 98.19 100.00 100.00 99.01 100.00 96.02 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG12703 chrX + chrX_19645123_19645380;chrX_19645198_19645380;chrX_19645202_19645380;chrX_19645171_19645380;chrX_19644924_19645380 chrX_19645200_19645380 chrX_19645381_19645579;chrX_19644833_19644923 2.82 3.17 2.30 2.33 1.75 1.47 4.26 2.46 4.07 4.00 1.59 3.45 2.13 4.17 3.75 2.06 3.17 1.27 1.47 2.58 1.52 1.39 2.91 4.35 2.04 0.00 4.62 2.50 5.66 3.19 2.30 3.70 3.79 2.46 4.17 1.67 3.57 0.00 6.49 2.44 6.06 1.25 3.08 2.38 1.35 3.26 1.47 2.82 3.80 3.39 3.80 2.17 6.00 2.22 1.15 4.17 4.29 4.46 K intron_retention I_chr2R_13334737_13336615,I_chr2R_13334737_13336769,mthl3 chr2R - chr2R_13336331_13336615 chr2R_13336330_13336331;chr2R_13336615_13336616 chr2R_13336084_13336330;chr2R_13336616_13336707 53.33 NA NA 53.33 NA NA NA NA 73.33 NA NA 36.36 NA NA NA NA NA 8.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 46.15 NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA 70.00 NA K intron_retention CG32276 chr3L - chr3L_3198432_3198751 chr3L_3198431_3198432;chr3L_3198751_3198752 chr3L_3197862_3198431;chr3L_3198752_3198866 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.28 0.00 0.25 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA hyx,RI_chr3R_4867356_4867447 chr3R + chr3R_4867356_4867447 chr3R_4867356_4867422 chr3R_4867256_4867355;chr3R_4867448_4867547 100.00 100.00 98.21 100.00 100.00 100.00 100.00 98.95 99.04 NA 100.00 100.00 100.00 100.00 100.00 98.80 100.00 100.00 100.00 99.06 100.00 100.00 100.00 100.00 100.00 100.00 98.73 100.00 100.00 100.00 96.61 100.00 98.48 95.89 100.00 98.33 98.41 98.67 96.97 100.00 97.83 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 98.89 96.61 100.00 97.83 100.00 98.80 100.00 98.67 K intron_retention CG14542,CG14543 chr3R + chr3R_21878952_21879011 chr3R_21878951_21878952;chr3R_21879011_21879012 chr3R_21878519_21878951;chr3R_21879012_21879855 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 1.03 2.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 1.12 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 K intron_retention RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522912_523358 chrX_522911_522912;chrX_523358_523359 chrX_522849_522911;chrX_523359_523436 66.67 64.00 52.38 74.07 73.33 57.14 84.13 75.76 69.70 57.14 88.89 66.67 76.00 72.22 66.67 58.06 73.33 56.25 50.00 75.64 66.67 76.47 66.67 63.64 89.58 90.91 63.64 88.24 43.59 61.11 70.00 69.70 50.00 74.07 61.90 58.82 64.58 60.00 66.67 80.00 63.83 72.73 71.43 55.00 45.95 67.65 53.12 45.16 84.00 65.38 66.67 70.83 56.76 52.00 66.67 74.07 59.52 39.39 K alternative_donor CG31431 chr3R + chr3R_17696656_17697703;chr3R_17696581_17697703;chr3R_17696702_17697703 chr3R_17696730_17697703 chr3R_17697704_17697862;chr3R_17696406_17696580 85.19 87.18 79.09 85.19 86.15 87.21 79.64 88.48 81.53 87.88 84.09 84.83 91.84 81.37 82.93 85.71 85.19 80.17 83.90 87.95 96.39 83.02 77.11 81.33 90.20 86.27 84.27 89.13 61.82 77.78 87.50 82.26 88.61 87.50 83.02 88.64 89.29 84.85 84.72 80.61 86.42 85.78 83.72 91.95 90.77 82.50 87.30 87.88 88.18 77.36 83.33 85.00 89.74 92.50 86.72 88.24 84.62 84.00 K intron_retention capt,I_chr2L_1156009_1158078,I_chr2L_1153732_1154551,I_chr2L_1153732_1157370,I_chr2L_1163632_1163759 chr2L - chr2L_1153732_1155745 chr2L_1153731_1153732;chr2L_1155745_1155746 chr2L_1153632_1153731;chr2L_1155746_1155788 15.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA eIF5,I_chrX_15882955_15883078,RI_chrX_15883163_15883424,I_chrX_15883297_15883424,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15883360_15883424;chrX_15883302_15883424;chrX_15883143_15883424 chrX_15883163_15883424 chrX_15883425_15883509;chrX_15883079_15883142 4.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.55 K alternative_acceptor CG17494 chr2L + chr2L_22471985_22472552;chr2L_22471985_22472623 chr2L_22471985_22472618 chr2L_22471978_22471984;chr2L_22472624_22473865 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 1.82 0.00 1.64 0.00 0.00 0.00 0.00 2.10 1.39 0.75 1.67 0.00 0.00 0.00 0.00 1.32 2.08 0.00 2.53 3.85 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042891_5042983;chr2L_5042935_5042983 chr2L_5042888_5042983 chr2L_5042984_5043016;chr2L_5042835_5042887 14.96 NA NA 22.73 NA NA 26.09 NA 12.90 NA NA 26.47 NA NA NA 8.00 NA NA 4.55 11.54 NA NA NA NA NA NA NA NA 10.00 NA NA NA 13.64 18.18 NA NA NA NA NA 16.28 NA NA NA NA NA 7.14 NA 31.82 17.14 NA NA NA NA NA 21.43 NA NA 13.04 K alternative_acceptor CG4238 chr2L + chr2L_2029029_2029103 chr2L_2029029_2029091 chr2L_2028321_2029028;chr2L_2029104_2029418 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 K intron_retention CG8878 chr2R - chr2R_8037642_8038415 chr2R_8037641_8037642;chr2R_8038415_8038416 chr2R_8037556_8037641;chr2R_8038416_8038531 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 4.00 NA NA 0.00 5.00 NA NA 6.82 NA NA 0.00 6.67 NA 6.67 4.76 NA NA 6.67 NA 0.00 5.88 3.70 0.00 NA 0.00 2.70 0.00 0.00 NA NA NA 7.41 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 K intron_retention Irbp chr3R + chr3R_7236841_7236941 chr3R_7236840_7236841;chr3R_7236941_7236942 chr3R_7236778_7236840;chr3R_7236942_7238112 93.75 91.67 96.43 97.73 95.24 95.83 96.61 97.14 93.55 93.33 96.30 93.02 94.44 100.00 88.89 87.10 94.44 95.24 90.32 93.75 100.00 97.39 93.75 88.24 97.22 100.00 96.61 86.24 93.75 88.89 80.00 78.38 94.34 97.37 91.18 94.23 85.42 91.11 90.74 91.89 97.73 95.74 94.12 82.69 93.48 87.50 93.18 95.12 90.70 85.94 87.27 89.47 96.30 90.24 93.75 94.59 92.65 96.97 K intron_retention I_chr2L_2856176_2856244,RI_chr2L_2856673_2856772,CG2991 chr2L + chr2L_2866742_2866813 chr2L_2866741_2866742;chr2L_2866813_2866814 chr2L_2866332_2866741;chr2L_2866814_2867229 0.00 0.00 0.66 1.23 0.00 0.00 0.00 0.81 0.27 0.00 0.00 1.53 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 1.43 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 K jcn_only_AA Ptp99A,I_chr3R_25302126_25302175 chr3R + chr3R_25305548_25307191 chr3R_25305548_25307188 chr3R_25305229_25305547;chr3R_25307192_25307198 15.00 NA NA NA NA NA NA NA 29.17 NA NA NA NA NA NA NA NA NA NA NA NA 10.34 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.54 NA 15.00 NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA K intron_retention CG8735,noncoding_5214 chr2R - chr2R_4486909_4486976 chr2R_4486908_4486909;chr2R_4486976_4486977 chr2R_4486776_4486908;chr2R_4486977_4487206 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.88 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.67 0.00 2.13 3.23 0.00 0.00 0.00 1.32 0.00 3.39 0.00 0.00 0.00 3.30 0.00 3.12 0.00 0.00 0.00 0.00 0.00 2.78 1.00 0.00 0.00 2.20 0.00 0.00 3.39 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rpb4 chr3R - chr3R_14080914_14081038 chr3R_14080913_14080914;chr3R_14081038_14081039 chr3R_14080097_14080913;chr3R_14081039_14081173 28.43 NA 30.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 22.73 NA NA NA NA NA NA 42.86 NA NA NA 26.09 NA NA 7.69 NA NA NA NA NA 21.43 NA NA NA NA NA NA NA NA 31.25 NA 36.36 NA NA 16.67 38.46 NA NA NA K intron_retention CG15618,RI_chrX_19759043_19759112 chrX - chrX_19759043_19759112 chrX_19759042_19759043;chrX_19759112_19759113 chrX_19758943_19759042;chrX_19759113_19759212 66.67 NA NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA NA NA 80.00 NA 77.78 88.89 NA NA NA 70.00 NA 81.82 53.33 36.36 NA 50.00 NA NA 66.67 NA NA 66.67 73.33 NA NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA NA NA K jcn_only_AA Rab35 chrX - chrX_20051870_20052002 chrX_20051894_20052002 chrX_20052003_20052302;chrX_20051145_20051869 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.62 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.36 0.00 0.00 0.00 0.00 0.00 0.42 0.48 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.68 1.12 0.00 0.00 0.56 0.00 0.00 0.00 0.32 0.00 K jcn_only_AD I_chr2L_19388570_19389922,CG17544 chr2L - chr2L_19393657_19398346;chr2L_19393657_19398350 chr2L_19393657_19398334 chr2L_19393497_19393656;chr2L_19398351_19398401 44.97 45.45 46.92 44.52 46.77 39.51 43.95 38.94 46.41 51.41 47.64 41.30 50.57 37.26 59.29 40.11 52.81 39.74 51.82 41.06 40.00 50.90 43.21 44.18 50.98 47.77 49.62 54.00 65.48 44.33 45.40 50.84 54.59 48.79 43.87 50.20 43.87 48.41 47.67 42.94 52.54 44.36 43.89 38.26 40.75 44.97 40.40 50.89 41.05 46.09 48.37 43.26 51.81 44.55 41.40 41.35 40.78 42.51 K intron_retention CG31793 chr2L + chr2L_19003737_19003947 chr2L_19003736_19003737;chr2L_19003947_19003948 chr2L_19003340_19003736;chr2L_19003948_19004202 30.38 NA NA NA NA NA NA 14.29 23.08 NA NA 20.00 NA NA NA NA NA NA NA 15.79 NA 60.00 30.00 NA NA NA 26.09 15.38 30.77 41.67 50.00 NA 33.33 NA NA 25.00 41.67 NA 40.00 36.36 NA 21.43 NA 35.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor mav,RI_chr4_645290_646129 chr4 - chr4_646243_646421 chr4_646331_646421 chr4_646422_646475;chr4_646135_646242 100.00 100.00 100.00 100.00 NA 87.50 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 88.89 100.00 100.00 NA NA NA NA NA 87.50 100.00 NA 91.67 100.00 100.00 NA NA NA NA 85.71 NA 100.00 85.71 100.00 NA 85.71 NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention p130CAS chr3L + chr3L_168851_172060 chr3L_168850_168851;chr3L_172060_172061 chr3L_168581_168850;chr3L_172061_174510 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 2.78 0.00 6.90 6.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 1.72 0.00 0.00 10.14 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.31 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 K jcn_only_AA Vrp1,I_chr2R_17996482_17997091,I_chr2R_17996511_17997091,I_chr2R_17997529_17997692 chr2R - chr2R_17996485_17997091 chr2R_17996511_17997091 chr2R_17997092_17997191;chr2R_17996474_17996484 89.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 89.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG11151 chrX + chrX_13633894_13633981 chrX_13633893_13633894;chrX_13633981_13633982 chrX_13633777_13633893;chrX_13633982_13634145 8.33 7.50 5.00 5.69 2.82 7.35 15.66 2.70 7.14 16.28 5.88 5.65 6.12 6.35 7.50 3.45 6.02 3.03 8.51 7.34 8.57 13.00 5.00 6.98 17.14 13.58 16.25 12.99 46.00 12.50 2.20 12.12 26.67 5.21 22.22 16.67 6.86 7.58 7.50 12.00 20.00 5.26 5.88 16.00 14.86 19.05 11.11 22.22 6.67 8.16 12.50 9.09 19.64 11.11 5.95 8.33 8.57 23.08 K alternative_donor CG9705,I_chr3L_16773492_16773604,I_chr3L_16773517_16773604,I_chr3L_16774043_16774562 chr3L + chr3L_16773521_16773604;chr3L_16773517_16773604 chr3L_16773492_16773604 chr3L_16773605_16773704;chr3L_16773417_16773491 0.00 2.13 1.64 0.00 2.17 1.92 3.28 3.26 2.42 2.27 2.08 0.00 0.00 0.00 0.00 1.28 0.00 2.00 0.00 0.00 0.00 0.00 0.00 2.08 3.03 1.89 2.13 2.56 0.00 0.00 1.27 0.00 0.85 2.35 0.00 0.00 0.00 3.12 0.00 0.00 0.00 1.06 0.00 0.00 1.25 0.00 0.00 0.83 0.99 0.00 1.92 0.00 0.00 0.00 1.72 0.00 2.50 2.50 K jcn_only_AD CG6006 chr3R + chr3R_11984096_11984579;chr3R_11984036_11984579;chr3R_11984029_11984579;chr3R_11984018_11984579 chr3R_11983962_11984579 chr3R_11984580_11984637;chr3R_11983945_11983961 4.01 NA NA NA NA NA 4.55 NA 3.85 NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA 4.17 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA 3.23 NA 0.00 NA NA NA NA NA NA NA K intron_retention CG33298 chr2L + chr2L_9495657_9496144 chr2L_9495656_9495657;chr2L_9496144_9496145 chr2L_9495488_9495656;chr2L_9496145_9496255 53.59 NA 41.18 42.86 NA 41.67 73.08 62.16 56.10 NA NA 48.15 55.56 48.00 56.25 62.50 47.06 60.00 45.00 48.15 66.67 77.78 41.67 NA NA 47.37 58.33 NA NA NA 56.25 NA NA 50.00 NA NA NA NA NA NA NA 51.61 43.75 NA NA NA NA 33.33 60.00 NA 80.00 NA NA NA 58.33 NA NA NA K intron_retention HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13164646_13165514 chrX_13164645_13164646;chrX_13165514_13165515 chrX_13164424_13164645;chrX_13165515_13165622 71.67 72.22 75.00 46.43 53.57 59.38 50.85 56.86 66.67 84.62 58.62 71.67 66.67 73.08 58.33 65.71 68.42 55.56 66.67 47.06 66.67 79.10 66.67 82.93 79.55 70.00 68.18 88.46 70.21 71.93 62.50 79.17 77.78 78.00 74.19 80.56 76.12 81.25 69.84 82.93 68.18 81.16 53.85 84.31 84.62 68.75 75.00 77.36 69.44 77.78 67.44 75.00 91.67 86.67 66.67 79.17 68.00 76.32 K intron_retention E_chrX_2341497_2346020,z chrX + chrX_2343361_2343422 chrX_2343360_2343361;chrX_2343422_2343423 chrX_2342819_2343360;chrX_2343423_2344642 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA 0.00 NA 5.26 NA 0.00 0.00 4.76 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention Apc chr3R - chr3R_24666548_24670281 chr3R_24666547_24666548;chr3R_24670281_24670282 chr3R_24662621_24666547;chr3R_24670282_24670491 0.00 0.00 0.00 2.06 0.00 3.28 1.43 1.75 1.12 0.00 0.00 0.00 0.00 2.50 0.00 1.80 0.00 0.00 0.00 2.63 0.00 13.75 0.00 0.00 2.00 0.00 4.95 0.00 5.56 0.00 1.59 0.00 1.04 0.00 2.56 0.00 0.00 1.47 1.19 0.47 4.65 0.64 3.57 0.00 0.00 4.44 0.00 0.00 0.00 0.00 1.06 1.72 0.00 0.00 0.00 0.00 0.00 1.89 K intron_retention rho-7,noncoding_6143 chr2R - chr2R_7875802_7875866 chr2R_7875801_7875802;chr2R_7875866_7875867 chr2R_7875507_7875801;chr2R_7875867_7876062 13.82 12.50 6.25 42.86 22.73 20.83 30.77 8.51 13.21 17.65 9.52 14.00 16.67 NA 17.86 6.67 20.83 15.38 22.22 10.61 10.53 46.15 14.04 12.50 22.22 30.00 22.22 17.65 41.18 8.89 37.74 13.04 18.29 5.88 9.68 30.77 11.32 8.33 10.53 13.56 19.51 11.94 0.00 16.33 10.71 14.00 8.00 23.40 13.04 19.35 16.95 15.00 7.50 5.71 0.00 13.64 10.00 10.45 K jcn_only_AD CG1647 chr3R + chr3R_24646630_24646780 chr3R_24646719_24646780 chr3R_24646781_24650230;chr3R_24646510_24646629 88.48 NA NA 91.30 NA NA NA 80.00 90.00 NA NA NA NA NA NA NA NA NA NA 80.95 NA NA NA NA NA NA NA NA NA NA NA NA 76.19 NA NA NA NA NA NA NA NA 90.32 NA NA NA NA NA 95.45 86.96 NA NA NA NA NA NA NA NA NA K intron_retention CG6199 chr3L - chr3L_11191811_11191869 chr3L_11191810_11191811;chr3L_11191869_11191870 chr3L_11191304_11191810;chr3L_11191870_11192304 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.89 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.83 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14438 chrX + chrX_6654380_6654446 chrX_6654379_6654380;chrX_6654446_6654447 chrX_6654310_6654379;chrX_6654447_6656144 0.00 0.00 9.52 20.45 0.00 0.00 0.00 2.27 4.29 0.00 0.00 1.82 0.00 6.67 0.00 8.89 4.55 0.00 6.98 0.00 0.00 27.27 8.33 0.00 8.70 9.09 19.57 40.00 0.00 0.00 6.67 NA 6.06 0.00 0.00 0.00 2.44 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 2.27 0.00 6.25 0.00 NA NA 6.45 NA NA NA K jcn_only_AA CG33156 chr2R - chr2R_9437422_9439612 chr2R_9439524_9439612 chr2R_9439613_9439932 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG11138 chrX - chrX_12467848_12475604 chrX_12467893_12475604 chrX_12475605_12477211;chrX_12467758_12467847 15.50 14.29 25.93 2.56 13.04 12.50 NA 31.82 14.81 16.22 9.09 16.98 NA 14.81 17.39 4.35 24.00 22.73 13.64 23.53 30.43 26.79 15.00 15.38 26.47 53.85 11.43 12.12 NA 20.00 23.08 NA 7.69 22.00 23.08 47.62 12.00 21.43 17.39 22.92 NA 11.11 3.85 15.79 15.62 4.76 10.34 24.14 17.54 12.50 7.69 7.41 19.35 9.52 11.43 11.76 8.33 25.00 K alternative_acceptor RhoGAP71E,I_chr3L_15583097_15589765 chr3L + chr3L_15582377_15582458 chr3L_15582377_15582436 chr3L_15581999_15582376;chr3L_15582459_15583096 73.53 70.83 79.41 84.78 70.59 100.00 73.02 80.43 86.49 46.15 56.52 81.48 85.00 77.42 79.41 86.21 82.14 78.26 75.68 84.44 73.08 51.22 73.53 71.43 90.91 93.33 69.57 44.44 68.18 51.72 83.87 53.85 56.82 75.86 66.67 68.00 78.57 68.75 80.00 63.04 46.15 82.00 72.73 71.88 64.71 51.72 80.00 52.54 82.76 55.56 63.89 47.06 85.71 88.89 75.00 76.47 77.78 58.62 N alternative_acceptor Clic chrX - chrX_13707761_13707907 chrX_13707839_13707907 chrX_13707908_13708018;chrX_13707363_13707760 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.76 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD RFeSP chr2L - chr2L_1612989_1613043 chr2L_1612989_1613039 chr2L_1612495_1612988;chr2L_1613044_1613423 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.09 0.00 K cassette CG32043,I_chr3L_9454388_9463367,I_chr3L_9454393_9454987,I_chr3L_9454393_9463367,I_chr3L_9454397_9463367,I_chr3L_9454660_9463367,I_chr3L_9457165_9457407 chr3L + chr3L_9454397_9463367 chr3L_9454397_9454987;chr3L_9457807_9463367 chr3L_9454988_9457806 chr3L_9454297_9454396;chr3L_9463368_9463423 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 100.00 100.00 100.00 K alternative_acceptor msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585733_2586413 chr3L_2585739_2586413 chr3L_2586414_2586502;chr3L_2585639_2585732 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA NA 100.00 90.91 NA 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K jcn_only_AD Rap2l,I_chr2R_19951753_19952256,RI_chr2R_19952181_19952256 chr2R + chr2R_19951097_19952256;chr2R_19951753_19952256 chr2R_19952181_19952256 chr2R_19952257_19952356;chr2R_19950576_19951096 4.44 8.11 1.47 2.94 6.78 5.71 7.84 2.33 3.95 2.86 8.70 4.59 0.00 0.00 4.11 6.49 3.23 1.79 2.78 4.08 7.84 1.00 6.93 6.59 10.42 2.70 4.39 13.04 4.17 6.90 5.68 0.00 3.70 6.72 0.00 14.29 11.11 3.03 6.82 6.54 2.78 4.86 3.85 4.44 6.94 4.39 4.29 0.00 6.15 12.00 5.88 8.62 3.45 5.17 3.45 7.45 6.52 2.30 N jcn_only_AD CG17255,I_chrX_10366177_10366615,RI_chrX_10366177_10367270 chrX - chrX_10366177_10367360;chrX_10366177_10367201;chrX_10366177_10367458;chrX_10366177_10368085;chrX_10366177_10366615 chrX_10366177_10367270 chrX_10366077_10366176;chrX_10368086_10368118 7.58 12.96 5.13 10.22 7.06 7.22 10.20 8.42 12.90 9.89 7.14 10.42 5.36 9.60 8.97 7.51 3.36 4.26 9.15 7.58 3.37 3.93 14.29 12.23 5.63 4.38 14.41 9.68 3.52 13.08 3.85 4.35 4.72 12.63 7.56 6.12 12.41 7.87 7.00 5.64 6.25 12.81 8.00 9.30 6.25 3.54 5.56 2.37 10.28 4.23 13.19 16.90 9.84 12.50 6.59 11.67 10.71 3.09 K jcn_only_AD ire-1,FI_chr3R_15689914_15690042 chr3R - chr3R_15683407_15686368 chr3R_15683407_15686212 chr3R_15682963_15683406;chr3R_15686369_15686483 0.00 0.00 0.00 0.80 0.00 0.00 2.42 2.11 0.58 0.00 0.00 0.57 0.00 0.00 0.99 1.55 0.00 2.94 4.21 0.90 0.00 2.16 0.00 0.00 0.00 0.00 1.72 0.00 0.73 0.00 2.84 1.61 1.38 0.00 1.00 1.06 0.00 1.37 0.00 1.13 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.60 3.28 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG40160 chr3LHet + chr3LHet_1562418_1566509 chr3LHet_1562441_1566509 chr3LHet_1566510_1566570;chr3LHet_1562399_1562417 80.91 NA NA NA NA NA 81.82 91.67 78.57 NA NA 72.73 NA 77.78 NA 100.00 NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA 91.67 NA NA NA NA NA NA NA NA NA K intron_retention Pp4-19C,I_chrX_20293932_20294672,RI_chrX_20293980_20294069,REI_chrX_20294004_20294672 chrX - chrX_20294028_20294672 chrX_20294027_20294028;chrX_20294672_20294673 chrX_20293086_20294027;chrX_20294673_20294772 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA 46.67 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA K cassette CG10616 chr3L + chr3L_12465030_12465646 chr3L_12465030_12465121;chr3L_12465297_12465646 chr3L_12465122_12465296 chr3L_12464993_12465029;chr3L_12465647_12465737 97.67 100.00 100.00 88.68 96.97 97.44 94.64 98.46 96.30 100.00 100.00 95.89 97.06 100.00 97.78 98.08 100.00 95.00 97.37 97.67 96.55 95.45 100.00 98.00 96.88 88.10 100.00 100.00 97.50 97.67 95.45 100.00 96.43 98.28 94.87 100.00 98.08 100.00 92.73 98.46 94.87 94.81 97.37 97.62 97.62 92.98 97.22 97.83 98.48 100.00 98.28 96.77 100.00 100.00 97.78 97.44 100.00 100.00 K cassette Pk61C,CE_chr3L_129889_141769,I_chr3L_136336_141563 chr3L + chr3L_136336_141769 chr3L_136336_141563;chr3L_141692_141769 chr3L_141564_141691 chr3L_136236_136335;chr3L_141770_141837 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.66 0.50 0.98 0.00 0.51 1.08 0.00 1.69 0.00 0.00 0.00 0.00 0.38 0.00 0.41 0.00 0.00 0.00 0.00 0.86 1.94 0.44 1.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.44 0.00 0.00 0.00 0.00 1.30 0.00 0.65 2.63 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Deaf1 chr3L + chr3L_19813102_19821416 chr3L_19813111_19821416 chr3L_19821417_19822045;chr3L_19812312_19813101 54.24 58.62 66.67 55.17 46.15 35.71 59.09 47.83 47.50 66.67 55.56 52.63 54.55 50.00 61.11 46.67 50.00 50.00 68.75 47.27 47.06 60.00 54.55 52.17 46.43 46.15 43.75 53.85 58.33 57.14 52.94 57.14 55.56 55.00 50.00 42.86 54.24 57.58 45.65 35.90 46.15 46.34 58.33 52.00 60.61 50.00 48.57 58.82 61.29 40.48 56.41 65.00 56.67 55.88 63.16 55.26 59.38 47.62 K alternative_acceptor CG11897 chr3R + chr3R_24984070_24984223 chr3R_24984070_24984220 chr3R_24983872_24984069;chr3R_24984224_24984412 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA NA NA 100.00 NA K intron_retention CG5805 chr3R - chr3R_20612625_20612713 chr3R_20612624_20612625;chr3R_20612713_20612714 chr3R_20611695_20612624;chr3R_20612714_20612742 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention gce chrX + chrX_15210384_15210453 chrX_15210383_15210384;chrX_15210453_15210454 chrX_15210152_15210383;chrX_15210454_15211263 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 1.57 0.00 0.00 4.12 0.00 0.00 3.70 0.00 0.00 2.17 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 6.49 4.76 0.00 2.86 0.00 0.00 3.51 1.32 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.98 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor loqs chr2L + chr2L_13384795_13384986 chr2L_13384795_13384983 chr2L_13384657_13384794;chr2L_13384987_13385674 77.78 NA NA NA NA NA NA NA 72.73 NA NA NA NA NA NA 66.67 NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA 92.31 NA NA 66.67 NA NA 66.67 NA NA NA NA 77.78 NA NA NA NA NA NA 88.89 90.00 NA NA NA NA NA NA NA NA K alternative_donor CG13692,E_chr2L_422193_422242 chr2L + chr2L_422189_422242 chr2L_422193_422242 chr2L_422243_422342;chr2L_422093_422188 4.20 6.67 NA NA NA NA 9.52 23.08 5.71 NA NA 12.50 NA NA NA 0.00 NA NA NA 10.34 NA NA 14.29 6.90 NA NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 12.50 0.00 3.70 0.00 NA 9.09 NA 0.00 8.70 7.89 6.90 0.00 3.85 9.68 2.78 0.00 4.55 0.00 NA 12.50 3.39 0.00 N intron_retention ire-1,FI_chr3R_15689914_15690042 chr3R - chr3R_15683407_15686607 chr3R_15683406_15683407;chr3R_15686607_15686608 chr3R_15682963_15683406;chr3R_15686608_15687013 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG7408 chr3L + chr3L_17872349_17873229 chr3L_17872349_17873049;chr3L_17873165_17873229 chr3L_17873050_17873164 chr3L_17872262_17872348;chr3L_17873230_17873397 88.89 NA NA 70.00 NA NA 87.50 90.91 100.00 NA NA 71.43 100.00 83.33 NA 92.31 NA 100.00 NA 88.89 83.33 NA NA NA NA 83.33 NA NA NA NA NA NA NA 88.89 NA NA NA NA NA 83.33 NA 91.67 NA NA NA NA NA NA 100.00 NA NA NA NA NA 85.71 NA NA NA K jcn_only_AD Lmpt,I_chr3L_16904980_16905228 chr3L + chr3L_16906499_16913981 chr3L_16912803_16913981 chr3L_16913982_16914151 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.39 0.00 0.00 0.00 0.00 4.35 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 1.92 NA 0.00 0.00 2.27 0.00 0.00 0.00 1.18 0.00 0.00 1.43 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 NA 0.00 4.55 2.33 3.85 NA K intron_retention Pur-alpha,I_chr4_581447_585166 chr4 + chr4_581038_581096 chr4_581037_581038;chr4_581096_581097 chr4_580998_581037;chr4_581097_581209 11.90 NA NA NA NA NA 29.41 15.79 7.69 NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 9.52 NA NA NA NA NA NA NA NA NA K intron_retention Sug,noncoding_12057 chr3L + chr3L_11681439_11682207 chr3L_11681438_11681439;chr3L_11682207_11682208 chr3L_11681252_11681438;chr3L_11682208_11683255 12.28 8.89 9.30 10.42 20.00 15.79 13.21 10.94 9.17 14.58 7.41 27.14 22.73 16.13 9.30 11.67 0.00 17.65 10.87 13.73 8.33 15.00 10.00 15.62 12.20 9.52 13.43 19.05 24.14 13.73 5.88 18.18 30.00 11.11 11.36 20.00 14.71 17.14 13.92 11.29 15.15 10.78 15.38 7.94 16.28 12.50 8.06 10.81 11.76 12.70 13.64 15.38 10.00 12.28 6.82 9.52 10.00 11.54 K alternative_donor CREF_chr3R_5589662_5589762,CG8481 chr3R + chr3R_5594185_5594466;chr3R_5594297_5594466 chr3R_5593863_5594466 chr3R_5594467_5594493;chr3R_5593583_5593862 66.67 50.00 76.92 63.64 NA 71.43 70.00 69.23 66.67 NA 69.23 69.23 50.00 NA 62.50 60.00 NA NA 71.43 72.73 NA 21.05 50.00 77.78 NA NA NA 33.33 57.14 60.00 85.71 72.73 66.67 78.57 NA NA 81.82 50.00 77.78 61.11 80.00 60.00 NA 63.64 78.57 54.55 66.67 70.00 50.00 NA 77.78 66.67 NA NA 66.67 NA 85.71 33.33 K alternative_donor sqh,I_chrX_6118043_6119039,I_chrX_6118150_6118725,I_chrX_6118150_6118729,I_chrX_6118150_6118790,I_chrX_6118150_6118800 chrX - chrX_6118150_6118729;chrX_6118150_6119035;chrX_6118150_6118725;chrX_6118150_6119039 chrX_6118150_6118949 chrX_6118050_6118149;chrX_6119040_6119139 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG5514,RI_chr3R_23768206_23768306,Gp93 chr3R + chr3R_23767856_23768306;chr3R_23767856_23768309 chr3R_23767856_23768156 chr3R_23765429_23767855;chr3R_23768310_23768406 17.24 11.11 11.36 12.77 24.14 17.50 7.69 12.12 13.33 16.67 15.62 20.55 10.71 17.14 19.05 10.00 24.00 14.29 9.52 9.89 17.86 44.83 15.09 17.24 15.91 22.22 17.31 45.71 24.49 22.22 16.67 23.73 18.84 17.74 21.28 33.33 17.24 21.88 19.05 20.00 16.18 12.50 16.13 23.68 24.73 18.52 9.64 22.81 18.57 14.43 15.71 33.33 8.06 14.81 16.00 19.30 7.53 9.09 K intron_retention CG17255,RI_chrX_10366177_10367270 chrX - chrX_10359281_10359617 chrX_10359280_10359281;chrX_10359617_10359618 chrX_10359176_10359280;chrX_10359618_10365571 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.81 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.69 0.25 0.38 0.89 0.49 0.00 0.00 0.54 0.72 0.36 0.85 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 K alternative_acceptor CG7702,CG31230 chr3R + chr3R_14497097_14498553 chr3R_14497097_14498543 chr3R_14496860_14497096;chr3R_14498554_14500401 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 98.31 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 93.33 97.73 100.00 100.00 100.00 96.43 97.44 100.00 100.00 97.87 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG8949,I_chrX_16971501_16971713 chrX - chrX_16964949_16965019 chrX_16964948_16964949;chrX_16965019_16965020 chrX_16964779_16964948;chrX_16965020_16965480 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CtBP chr3R + chr3R_8845537_8845617 chr3R_8845536_8845537;chr3R_8845617_8845618 chr3R_8845151_8845536;chr3R_8845618_8845923 2.33 5.43 6.06 6.41 6.06 2.27 8.74 8.06 7.03 0.00 3.00 6.25 7.92 3.53 5.66 4.58 1.33 4.44 4.76 4.23 2.17 1.50 1.67 0.00 0.00 3.49 3.54 4.35 0.00 1.49 4.69 0.00 0.00 6.94 2.90 0.00 1.59 0.00 3.05 1.94 0.00 3.54 2.63 2.47 0.00 0.00 0.00 0.00 3.74 0.00 4.00 1.89 0.00 0.00 1.80 0.00 2.33 0.00 K jcn_only_AD CG1599,RI_chr2R_5728855_5728907,I_chr2R_5728977_5729044,I_chr2R_5729744_5729805 chr2R - chr2R_5728855_5728912 chr2R_5728855_5728907 chr2R_5728755_5728854;chr2R_5728913_5728976 2.56 2.34 3.45 2.02 2.73 3.42 1.35 3.25 2.93 3.28 3.00 2.39 3.25 1.57 3.12 1.00 1.92 2.34 1.92 2.63 7.00 2.06 0.00 3.15 1.09 3.33 2.68 2.78 1.77 1.16 4.52 3.23 2.78 3.52 5.62 1.19 2.96 2.78 3.07 0.45 2.24 2.40 1.53 2.27 4.20 2.99 2.24 2.70 1.39 3.40 2.56 1.90 1.14 1.11 1.17 1.14 1.16 3.94 K alternative_acceptor Dbp80 chr3LHet + chr3LHet_2543829_2543917;chr3LHet_2543829_2543887 chr3LHet_2543829_2543938 chr3LHet_2543765_2543828;chr3LHet_2543939_2543944 0.00 8.33 0.00 0.00 0.00 10.00 0.00 3.33 0.00 NA NA 5.26 0.00 0.00 8.33 0.00 0.00 8.33 0.00 5.88 20.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 6.67 NA NA 5.88 NA NA NA 14.29 0.00 7.14 NA 5.56 0.00 5.56 NA 0.00 4.17 25.00 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 K jcn_only_AA CG17698 chr3L + chr3L_23739645_23741523;chr3L_23739645_23740972;chr3L_23739645_23741050 chr3L_23739645_23740858 chr3L_23739290_23739644 4.76 6.25 NA 7.02 0.00 0.00 7.79 10.29 1.00 NA NA 11.90 0.00 5.26 NA 2.86 12.00 NA 6.25 5.71 NA NA 0.00 4.35 NA 4.00 0.00 NA NA NA 0.00 NA NA 3.33 NA 10.00 NA 4.76 NA 10.71 NA 5.80 0.00 13.64 NA 4.17 NA NA 3.12 8.00 2.44 8.33 4.76 NA 6.25 3.33 3.57 NA K alternative_donor CG11148,RI_chr4_886921_887162 chr4 - chr4_886921_887601;chr4_886921_887595;chr4_886921_887591 chr4_886921_887162 chr4_886821_886920;chr4_887602_887637 4.17 0.00 0.00 8.82 0.00 0.00 9.09 5.41 3.03 NA 7.14 7.41 6.25 5.56 0.00 9.52 5.26 0.00 0.00 2.86 0.00 NA 9.09 9.09 12.50 0.00 12.50 11.11 7.14 10.00 4.17 NA 0.00 3.12 NA 9.09 NA NA NA 4.35 NA 2.86 0.00 0.00 NA NA NA 3.85 6.67 0.00 9.09 NA NA NA 0.00 NA NA 0.00 K jcn_only_AD stck,I_chr3R_4184313_4184380,I_chr3R_4184660_4184730 chr3R + chr3R_4182818_4184192;chr3R_4183179_4184192 chr3R_4182496_4184192 chr3R_4184193_4184312;chr3R_4182427_4182495 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 NA NA 0.00 0.00 4.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA K jcn_only_AA RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817 chr2R + chr2R_15330246_15330305;chr2R_15330246_15330317 chr2R_15330246_15330292 chr2R_15330177_15330245;chr2R_15330318_15330383 0.03 0.03 0.03 0.01 0.02 0.03 0.02 0.01 0.01 0.07 0.02 0.01 0.04 0.00 0.00 0.00 0.00 0.01 0.00 0.03 0.05 0.05 0.02 0.02 0.04 0.02 0.04 0.00 0.07 0.04 0.26 0.00 0.08 0.02 0.06 0.08 0.01 0.03 0.04 0.05 0.07 0.00 0.00 0.01 0.03 0.03 0.03 0.04 0.01 0.03 0.01 0.00 0.01 0.03 0.04 0.03 0.02 0.05 K jcn_only_AD CG7956 chr3R + chr3R_17351023_17351248 chr3R_17351141_17351248 chr3R_17351249_17351485;chr3R_17350986_17351022 93.10 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 93.10 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CoVa,I_chr3R_7645367_7645428 chr3R + chr3R_7645367_7645432 chr3R_7645367_7645409 chr3R_7645359_7645366;chr3R_7645433_7645528 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.15 0.00 0.27 0.00 0.00 0.00 0.17 0.00 0.62 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K alternative_acceptor Patj,CG12022 chr3L + chr3L_1798924_1799009 chr3L_1798924_1798981 chr3L_1798831_1798923;chr3L_1799010_1800699 69.23 75.00 72.73 64.29 45.45 77.78 87.50 69.23 61.11 60.00 46.15 81.82 NA 88.89 63.64 87.50 72.73 66.67 61.54 70.59 87.50 83.33 63.16 75.00 66.67 63.64 81.82 91.67 93.33 66.67 61.54 71.43 63.64 60.00 81.82 55.56 59.09 66.67 56.25 65.00 50.00 62.50 55.56 69.23 70.00 50.00 NA 58.82 92.31 87.50 90.00 83.33 NA 75.00 63.64 NA 72.73 80.00 K intron_retention RpL23A,E_chr3L_1667550_1667808,I_chr3L_1667736_1667806 chr3L - chr3L_1667736_1667808 chr3L_1667735_1667736;chr3L_1667808_1667809 chr3L_1667636_1667735;chr3L_1667809_1667906 0.02 0.01 0.05 0.04 0.00 0.05 0.08 0.04 0.02 0.00 0.00 0.01 0.01 0.03 0.03 0.00 0.00 0.00 0.06 0.02 0.00 0.04 0.04 0.00 0.08 0.06 0.15 0.22 0.06 0.00 0.04 0.02 0.05 0.02 0.01 0.00 0.04 0.00 0.03 0.02 0.06 0.04 0.00 0.01 0.01 0.02 0.02 0.00 0.04 0.00 0.03 0.00 0.02 0.02 0.01 0.04 0.03 0.01 K jcn_only_AD SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_17027129_17027406 chr3R_17027131_17027406 chr3R_17027407_17027904;chr3R_17027063_17027128 96.88 96.88 NA 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 92.31 NA 94.87 100.00 100.00 96.00 NA 97.37 96.55 100.00 96.30 95.00 NA 96.67 100.00 95.45 100.00 93.85 100.00 96.49 96.77 NA 100.00 NA 95.45 NA NA 100.00 NA 100.00 97.56 90.70 NA 100.00 90.32 NA 95.45 NA NA K jcn_only_AA l(2)k01209,I_chr2R_13308079_13310771,RI_chr2R_13310877_13311160 chr2R + chr2R_13308079_13308952;chr2R_13308079_13308681;chr2R_13308079_13311160 chr2R_13308079_13308147 chr2R_13307979_13308078 3.23 7.02 2.33 3.70 NA 2.00 8.70 0.00 8.79 0.00 5.41 1.15 3.85 0.00 4.44 2.86 0.00 4.65 2.70 1.92 4.76 7.69 0.00 2.99 0.00 0.00 1.23 1.69 12.73 1.49 6.98 4.65 6.31 3.08 1.75 1.47 1.43 1.39 4.76 7.14 4.88 5.26 3.33 5.88 14.75 9.09 0.00 10.00 4.00 0.00 0.78 2.56 7.84 4.65 4.26 0.00 3.12 7.81 K intron_retention Mtch,RI_chr3L_184729_185366,I_chr3L_185367_185925 chr3L + chr3L_184670_184774 chr3L_184669_184670;chr3L_184774_184775 chr3L_184665_184669;chr3L_184775_185000 73.33 75.00 75.00 73.33 60.00 52.63 70.37 63.16 70.00 72.73 58.82 73.53 50.00 60.00 65.38 74.07 92.31 66.67 60.87 65.22 71.43 93.33 95.00 94.74 71.43 60.87 100.00 81.82 85.19 93.75 78.12 50.00 55.56 73.33 92.31 76.47 78.95 89.47 63.16 67.35 66.67 63.41 85.71 72.22 59.09 78.12 87.50 62.50 71.79 73.33 100.00 92.31 85.71 100.00 69.23 75.00 80.00 63.64 N intron_retention Moca-cyp chr3R + chr3R_24167182_24167243 chr3R_24167181_24167182;chr3R_24167243_24167244 chr3R_24167094_24167181 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 67.74 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 K jcn_only_AD par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350157_15351846;chr2R_15350285_15351846;chr2R_15350149_15351846 chr2R_15350437_15351846 chr2R_15351847_15351914;chr2R_15350068_15350148 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA K multi_cassette CG2316,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_210055,I_chr4_209875_210628,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_211303,RI_chr4_210688_211927,I_chr4_210688_213991,I_chr4_210688_214019,I_chr4_210688_214049,RI_chr4_210688_214450 chr4 - chr4_208796_210623 chr4_208796_208855;chr4_208996_209050;chr4_209150_209203;chr4_209875_210623 chr4_208856_208995;chr4_209051_209149;chr4_209204_209874 chr4_208696_208795;chr4_210624_210636 100.00 100.00 100.00 100.00 93.33 100.00 97.22 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Mvl,I_chr3R_16884191_16886355 chr3R - chr3R_16884191_16886003 chr3R_16884191_16885988 chr3R_16884091_16884190;chr3R_16886004_16886210 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 6.82 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 1.75 0.00 0.00 0.00 0.00 0.00 NA 4.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 K alternative_donor chic,RI_chr2L_5976783_5980950,I_chr2L_5979705_5979818,I_chr2L_5979705_5979941,RI_chr2L_5979705_5979951,I_chr2L_5979705_5979953,I_chr2L_5979705_5980025,I_chr2L_5979705_5980213,I_chr2L_5979705_5980370,I_chr2L_5979705_5980558,I_chr2L_5979705_5980632,I_chr2L_5979705_5980639,RI_chr2L_5979705_5980734 chr2L - chr2L_5979705_5980208;chr2L_5979705_5979959 chr2L_5979705_5979939 chr2L_5979605_5979704;chr2L_5980209_5980475 99.06 98.53 99.10 99.37 98.55 98.99 99.21 99.17 98.86 98.95 99.65 99.07 99.35 99.11 98.00 98.80 98.99 99.03 98.88 98.88 98.78 99.13 99.27 98.94 99.64 99.20 99.07 98.68 97.98 99.61 99.05 99.65 99.02 99.16 98.96 98.29 99.03 99.29 98.52 99.43 99.09 98.99 98.50 98.92 99.22 99.22 99.20 99.06 99.19 99.25 99.39 98.90 98.79 99.15 98.87 98.58 99.25 99.07 K cassette CG32196 chr3L - chr3L_18453170_18453968 chr3L_18453170_18453323;chr3L_18453447_18453968 chr3L_18453324_18453446 chr3L_18453036_18453169;chr3L_18453969_18453999 100.00 NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA K jcn_only_AD Mkrn1 chr3L - chr3L_21526287_21526740 chr3L_21526287_21526666 chr3L_21525439_21526286;chr3L_21526741_21526778 100.00 100.00 96.43 94.00 100.00 93.33 98.21 98.48 96.20 100.00 96.88 100.00 100.00 100.00 100.00 98.86 100.00 NA 100.00 98.51 NA 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 96.83 NA 100.00 100.00 100.00 97.30 100.00 100.00 98.65 95.08 96.15 98.36 100.00 96.81 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD sqd,I_chr3R_9462248_9471474,I_chr3R_9468150_9468236,I_chr3R_9470417_9471474 chr3R - chr3R_9468150_9468236 chr3R_9468150_9468233 chr3R_9468050_9468149;chr3R_9468237_9468292 99.66 99.81 99.29 98.73 100.00 99.75 99.72 100.00 99.70 99.47 100.00 99.48 100.00 99.21 99.20 99.67 100.00 98.84 99.02 99.41 100.00 99.72 99.49 99.49 99.72 99.52 99.02 100.00 99.68 99.62 98.76 99.77 99.63 99.16 100.00 98.99 99.69 99.25 99.72 99.74 99.39 99.76 98.76 99.61 99.52 100.00 100.00 99.70 99.49 99.70 98.98 99.74 99.60 99.66 100.00 98.69 99.71 99.63 K intron_retention Chc,RI_chrX_15728405_15729273,I_chrX_15728405_15729401,I_chrX_15728946_15729357 chrX - chrX_15728405_15729370 chrX_15728404_15728405;chrX_15729370_15729371 chrX_15728305_15728404;chrX_15729371_15729373 93.55 94.44 90.00 91.89 90.91 95.00 93.85 97.92 93.94 100.00 100.00 91.11 100.00 97.14 92.86 89.71 91.30 91.67 96.97 92.45 93.33 86.96 86.36 93.33 92.86 76.00 100.00 100.00 91.67 100.00 96.00 NA 100.00 92.45 95.00 94.74 88.89 NA NA 93.55 NA 97.67 95.83 87.50 NA 100.00 91.67 100.00 87.50 100.00 91.67 100.00 NA 87.50 88.46 NA 100.00 NA K alternative_donor CG9399,I_chr3R_5403032_5403329 chr3R - chr3R_5399318_5399515;chr3R_5399318_5399524;chr3R_5399318_5399511 chr3R_5399318_5399863 chr3R_5399076_5399317;chr3R_5399864_5399874 22.50 NA NA NA NA NA 25.00 NA 16.67 NA NA NA NA NA NA 0.00 NA NA NA 20.00 NA NA NA 20.00 NA NA NA NA NA NA 50.00 NA NA 37.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA 20.00 NA NA NA NA NA 25.00 NA K intron_retention slgA,I_chrX_21247694_21251677,I_chrX_21251760_21251908,I_chrX_21253735_21253820 chrX + chrX_21247694_21250999 chrX_21247693_21247694;chrX_21250999_21251000 chrX_21247594_21247693;chrX_21251000_21251078 20.65 NA NA NA NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention l(3)82Fd chr3R - chr3R_1100041_1100456 chr3R_1100040_1100041;chr3R_1100456_1100457 chr3R_1099871_1100040;chr3R_1100457_1100616 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 K intron_retention mri,RI_chr3L_201061_201173,I_chr3L_212783_212843 chr3L + chr3L_201369_201440 chr3L_201368_201369;chr3L_201440_201441 chr3L_201300_201368;chr3L_201441_201516 4.76 2.04 5.62 15.56 2.60 4.35 5.36 5.43 4.42 0.00 6.94 6.18 6.06 3.17 3.96 8.57 4.76 6.74 6.17 5.79 5.33 4.35 6.09 6.73 5.63 6.56 9.84 7.59 4.73 3.57 3.70 3.52 4.13 8.27 3.06 8.05 4.62 6.98 3.38 3.76 4.89 6.79 4.11 4.67 3.09 5.14 5.85 3.83 4.76 4.79 3.85 3.12 3.57 5.80 3.09 5.47 3.55 2.99 K alternative_donor CG3294,RI_chr2L_4795584_4795842 chr2L + chr2L_4795572_4795842 chr2L_4795584_4795842 chr2L_4795843_4795942;chr2L_4795484_4795571 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 K intron_retention klar,noncoding_9693,I_chr3L_462559_472609,RI_chr3L_517594_539898 chr3L - chr3L_436850_443219 chr3L_436849_436850;chr3L_443219_443220 chr3L_436674_436849;chr3L_443220_443325 4.88 2.44 4.62 2.99 5.17 1.96 12.20 4.88 2.56 15.15 6.06 4.67 17.31 4.17 2.70 2.56 3.45 6.02 3.51 5.00 5.00 4.21 2.65 4.93 8.51 6.00 3.03 10.00 15.28 6.85 2.70 12.24 5.66 4.08 2.60 4.21 6.96 3.70 6.99 6.96 9.52 4.32 5.26 6.06 10.77 2.60 3.37 9.52 4.27 8.08 4.44 3.12 4.29 4.04 2.47 4.95 8.00 17.65 K intron_retention unc-13,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_902576_903586 chr4_902575_902576;chr4_903586_903587 chr4_902560_902575;chr4_903587_903686 92.86 100.00 90.91 100.00 NA 100.00 95.83 90.00 100.00 NA NA 92.59 100.00 100.00 86.67 96.30 90.91 100.00 92.86 92.86 NA 77.78 90.00 NA 70.00 91.67 100.00 71.43 100.00 NA 91.67 NA NA 88.00 100.00 88.89 NA NA NA 91.67 90.00 93.33 92.31 90.00 NA 90.00 88.89 92.86 96.15 100.00 NA NA NA NA 100.00 NA 100.00 100.00 N alternative_acceptor nimC1,I_chr2L_13975880_13975977 chr2L - chr2L_13975880_13976476 chr2L_13976221_13976476 chr2L_13976477_13976753;chr2L_13975780_13975879 3.83 4.55 0.00 3.45 3.70 4.00 6.90 1.28 3.61 NA 2.27 3.45 6.67 6.67 2.50 5.00 3.85 4.76 3.45 3.80 0.00 0.00 NA NA NA 3.70 13.33 NA NA 8.33 14.63 NA NA 4.35 NA NA 0.00 NA 6.67 7.69 NA 3.03 4.76 NA NA 7.69 NA NA 3.28 NA NA 5.56 NA NA 1.96 NA NA NA K alternative_acceptor CG4267,I_chr2L_2245495_2245550 chr2L + chr2L_2242592_2242696 chr2L_2242592_2242692 chr2L_2242390_2242591;chr2L_2242697_2242945 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 88.89 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 NA 100.00 NA 100.00 100.00 88.89 100.00 NA 91.67 92.86 94.44 100.00 100.00 100.00 100.00 88.89 NA NA 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor RI_chr3L_20370940_20371530,I_chr3L_20374844_20374891,fbl chr3L + chr3L_20383309_20383373 chr3L_20383309_20383367 chr3L_20383016_20383308;chr3L_20383374_20383493 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_donor RpL6 chr3R - chr3R_27421324_27421769;chr3R_27421324_27421603 chr3R_27421324_27421398 chr3R_27421243_27421323;chr3R_27421770_27422070 0.03 0.00 0.02 0.01 0.00 0.04 0.04 0.03 0.03 0.06 0.03 0.03 0.03 0.03 0.02 0.02 0.09 0.02 0.03 0.03 0.00 0.22 0.01 0.02 0.00 0.02 0.10 0.29 0.17 0.03 0.04 0.00 0.07 0.05 0.05 0.05 0.02 0.03 0.02 0.03 0.07 0.03 0.03 0.02 0.02 0.01 0.04 0.04 0.03 0.02 0.03 0.00 0.02 0.02 0.04 0.03 0.03 0.06 K intron_retention Dgp-1,I_chr2R_14058825_14059758,I_chr2R_14058954_14059942 chr2R - chr2R_14058404_14058472 chr2R_14058403_14058404;chr2R_14058472_14058473 chr2R_14058223_14058403;chr2R_14058473_14058824 0.91 1.27 0.00 3.61 0.00 1.38 1.13 2.45 0.73 0.62 0.00 2.62 0.00 1.80 1.36 0.00 0.00 0.00 0.81 0.55 1.32 1.27 2.17 1.78 0.47 0.63 4.17 4.55 5.72 0.74 0.50 0.26 0.91 0.54 0.70 3.22 1.97 0.65 0.93 1.26 1.24 1.08 0.00 2.15 0.46 1.19 0.73 0.29 1.73 1.15 2.29 1.14 0.00 0.96 0.00 0.00 0.71 0.66 K jcn_only_AD Rox8,I_chr3R_19872211_19872659,I_chr3R_19872214_19872630,I_chr3R_19872214_19872636,I_chr3R_19872214_19872838,I_chr3R_19876189_19876240 chr3R - chr3R_19872214_19873834;chr3R_19872214_19873540;chr3R_19872214_19873682 chr3R_19872214_19873550 chr3R_19872114_19872213;chr3R_19873835_19873903 0.00 NA 4.26 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 NA 0.00 NA 3.57 0.00 0.00 NA 4.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2392054 chrX_2387249_2388436;chrX_2388671_2389073;chrX_2389272_2392054 chrX_2388437_2388670;chrX_2389074_2389271 chrX_2387149_2387248;chrX_2392055_2392148 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA 75.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA K jcn_only_AA RpL12,I_chr2R_19948517_19948655,RI_chr2R_19948517_19948677,I_chr2R_19948517_19948682 chr2R + chr2R_19948517_19948672;chr2R_19948517_19948682;chr2R_19948517_19948655 chr2R_19948517_19948677 chr2R_19948417_19948516;chr2R_19948683_19948755 0.01 0.01 0.02 0.01 0.02 0.02 0.06 0.01 0.01 0.00 0.05 0.01 0.02 0.00 0.00 0.00 0.00 0.00 0.05 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.05 0.00 0.00 0.03 0.00 0.00 0.01 0.00 0.00 0.02 0.02 0.00 0.00 0.00 0.01 0.02 0.03 0.03 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.04 0.03 0.01 0.02 0.03 K intron_retention Myo61F chr3L + chr3L_1326317_1326372 chr3L_1326316_1326317;chr3L_1326372_1326373 chr3L_1326201_1326316;chr3L_1326373_1326835 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.69 0.17 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 2.21 0.43 0.00 0.00 0.00 0.80 1.89 10.08 0.00 0.59 0.00 0.00 0.22 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.51 0.00 0.45 0.00 0.00 0.75 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3294638 chr2R_3294565_3294566;chr2R_3294638_3294639 chr2R_3294491_3294565;chr2R_3294639_3294736 90.00 NA NA 96.77 NA NA 90.91 93.33 75.00 NA NA 94.12 NA 88.89 90.91 100.00 90.00 100.00 NA 94.12 80.00 93.33 87.50 92.31 88.89 100.00 91.67 90.91 84.62 80.00 88.89 88.89 81.25 90.00 87.50 94.44 91.67 100.00 100.00 94.74 85.71 75.00 NA 100.00 NA 77.78 NA 94.12 86.67 NA 76.92 NA NA NA 90.00 77.78 NA 88.89 K multi_cassette ssp4,I_chr2R_13409412_13410357,RI_chr2R_13409412_13411004,I_chr2R_13409412_13411328,I_chr2R_13409412_13411588,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13408434_13411328 chr2R_13408434_13410357;chr2R_13410466_13411004;chr2R_13411077_13411328 chr2R_13410358_13410465;chr2R_13411005_13411076 chr2R_13408151_13408433;chr2R_13411329_13411403 17.78 NA NA 5.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG12734,I_chr3L_3183812_3183932,I_chr3L_3184645_3185360 chr3L + chr3L_3183800_3184251;chr3L_3183800_3184248 chr3L_3183800_3183932;chr3L_3184038_3184251,chr3L_3184038_3184248 chr3L_3183933_3184037 chr3L_3183712_3183799;chr3L_3184252_3184644 100.00 97.30 100.00 100.00 95.65 100.00 96.55 100.00 98.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 98.04 95.24 100.00 98.00 97.78 95.65 100.00 100.00 100.00 88.24 100.00 100.00 96.15 96.77 100.00 100.00 87.50 98.44 97.44 100.00 97.14 95.65 97.96 100.00 100.00 96.55 100.00 100.00 100.00 100.00 97.44 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,RI_chr2L_126228_126309 chr2L - chr2L_118305_118360 chr2L_118304_118305;chr2L_118360_118361 chr2L_118136_118304;chr2L_118361_118874 0.00 0.00 2.11 0.00 0.00 0.00 2.94 0.89 4.27 0.00 0.00 1.31 1.92 0.00 0.00 3.75 0.00 0.00 0.70 2.94 0.00 0.00 0.00 0.00 0.00 1.25 1.61 0.00 0.00 3.39 1.05 3.39 2.00 3.66 0.00 0.00 2.50 0.00 0.00 1.09 0.00 2.22 3.12 0.00 0.00 0.00 0.00 0.00 1.74 2.35 0.00 0.00 0.00 0.00 3.15 0.00 0.00 0.00 K intron_retention CG42518,F_chr2R_14055227_14055470 chr2R + chr2R_14055028_14055162 chr2R_14055027_14055028;chr2R_14055162_14055163 chr2R_14054849_14055027;chr2R_14055163_14055226 5.48 5.48 6.58 7.06 4.76 1.64 8.75 7.14 7.14 10.00 5.88 7.41 0.00 4.92 5.63 4.00 8.89 0.00 3.64 4.80 0.00 16.13 8.97 6.38 12.77 12.50 11.11 3.28 11.54 8.62 3.33 2.00 6.82 3.61 6.56 8.06 4.62 4.69 7.41 9.09 3.12 5.56 4.44 14.04 3.45 1.12 3.09 5.97 0.00 5.48 9.30 4.55 0.00 5.33 5.26 5.50 0.00 0.00 N jcn_only_AD hang,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16323441_16324653 chrX_16324290_16324653 chrX_16324654_16324797;chrX_16323093_16323440 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522912_523360;chrX_522949_523360 chrX_522932_523360 chrX_523361_523436;chrX_522849_522911 0.75 1.04 0.48 2.16 3.17 2.44 0.68 0.36 2.01 0.82 1.92 0.57 0.61 0.74 0.59 0.94 0.85 0.80 0.00 0.26 0.97 2.34 0.32 1.83 0.83 0.00 0.85 1.63 0.20 0.59 0.00 0.75 0.63 0.36 2.17 0.49 0.57 1.19 1.06 1.44 0.55 0.32 0.00 1.19 0.22 0.58 0.70 0.27 0.88 1.87 1.32 1.38 0.54 0.85 0.00 1.18 1.03 0.52 K intron_retention Dap160,I_chr2L_21139943_21140007 chr2L - chr2L_21138031_21138112 chr2L_21138030_21138031;chr2L_21138112_21138113 chr2L_21137757_21138030;chr2L_21138113_21138358 2.50 0.00 4.08 6.98 0.00 0.00 4.44 11.32 5.10 0.00 0.00 2.35 5.26 5.13 5.88 4.17 0.00 0.00 0.00 6.90 0.00 2.70 2.82 0.00 3.23 4.55 4.41 7.55 0.00 0.00 1.69 1.79 2.38 6.67 0.00 2.50 2.06 1.85 0.00 3.70 7.55 8.16 2.50 0.00 4.35 5.63 1.92 5.26 4.88 3.64 2.27 0.00 0.00 0.00 1.82 5.97 1.47 7.32 K intron_retention RpL18A,I_chr2R_13434492_13434554,I_chr2R_13434492_13434576 chr2R - chr2R_13434492_13434913 chr2R_13434491_13434492;chr2R_13434913_13434914 chr2R_13434392_13434491;chr2R_13434914_13434994 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.02 0.12 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.82 0.23 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.14 0.00 0.00 0.05 0.00 1.20 0.00 0.10 0.00 0.03 0.00 0.13 0.04 K jcn_only_AD CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4839655;chr3R_4839215_4839561;chr3R_4839215_4839728;chr3R_4839215_4839889;chr3R_4839215_4839799 chr3R_4839215_4839851 chr3R_4839038_4839214;chr3R_4839890_4839901 18.18 23.81 22.73 16.67 NA NA NA 13.33 16.28 NA NA 13.64 NA NA NA NA NA NA 12.00 46.67 NA 13.33 9.52 NA NA 18.18 16.00 NA NA NA NA NA NA 22.73 NA NA NA NA NA 24.00 NA 20.00 NA 20.00 NA 18.18 NA NA 33.33 30.43 NA NA NA NA NA NA 26.67 4.55 K jcn_only_AA CG14194 chrX + chrX_19088052_19088400;chrX_19088052_19088456 chrX_19088052_19088528 chrX_19087981_19088051;chrX_19088529_19089031 0.00 0.00 0.00 0.00 1.22 1.33 0.81 0.00 0.00 1.69 2.90 0.00 0.00 0.00 0.90 0.00 0.00 0.00 1.00 0.00 0.00 0.99 0.80 0.72 1.25 0.00 1.65 0.00 1.19 0.00 0.00 0.00 0.00 0.75 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 2.74 0.00 0.00 K jcn_only_AA CG30344,I_chr2R_5033478_5033544,RI_chr2R_5033951_5034150,I_chr2R_5036518_5036570 chr2R + chr2R_5033478_5034150 chr2R_5033478_5033544 chr2R_5033378_5033477;chr2R_5034151_5034250 1.64 0.00 2.63 0.00 0.00 2.63 7.89 2.86 2.38 NA 2.70 0.00 10.71 5.71 0.00 3.03 0.00 2.56 0.00 5.41 0.00 4.65 1.37 3.64 5.26 3.33 1.96 6.25 2.94 2.63 5.13 0.00 3.23 1.69 5.56 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 NA 4.00 0.00 3.23 1.28 4.88 0.00 0.00 0.00 2.94 0.00 0.00 1.64 0.00 K intron_retention CG11357,C_chr3L_4563905_4578759 chr3L + chr3L_4550930_4551001 chr3L_4550929_4550930;chr3L_4551001_4551002 chr3L_4550861_4550929;chr3L_4551002_4551938 66.67 87.50 88.89 73.91 NA NA 77.27 80.00 71.43 NA 52.00 62.50 66.67 NA 66.67 86.67 88.89 58.82 63.64 61.90 55.00 NA NA NA NA NA 61.54 88.89 NA NA 54.55 NA NA 77.78 NA NA 66.67 NA 71.43 53.33 NA 70.59 NA NA NA NA 63.64 NA 52.94 NA 46.15 NA NA NA NA NA 75.00 NA K alternative_acceptor maf-S,CG11110 chr2R + chr2R_16528624_16528673;chr2R_16528624_16528685 chr2R_16528624_16528670 chr2R_16528563_16528623;chr2R_16528686_16529179 0.00 0.00 0.00 1.80 1.59 0.00 1.64 0.00 1.59 0.00 0.00 1.69 0.00 1.69 1.33 0.85 0.00 0.00 0.00 0.62 1.56 0.00 0.00 0.00 0.00 0.00 0.00 2.63 5.56 0.00 0.00 0.00 0.00 0.92 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.78 0.00 1.09 0.83 0.00 1.56 2.63 0.00 0.00 0.00 1.52 1.25 0.62 K jcn_only_AA CG31922,RI_chr2L_1170364_1170429 chr2L + chr2L_1170364_1170429 chr2L_1170364_1170418 chr2L_1170264_1170363;chr2L_1170430_1170529 96.15 NA NA 100.00 NA NA NA 100.00 NA NA NA 96.67 NA NA 100.00 90.00 NA NA 90.91 97.22 NA NA NA NA NA 96.00 NA NA NA NA 84.21 NA NA 90.91 NA NA NA NA NA NA NA 100.00 NA NA NA 91.67 NA NA 97.06 NA 100.00 NA NA NA 88.46 95.00 NA 96.15 K intron_retention CG2862 chr2L + chr2L_2770192_2770272 chr2L_2770191_2770192;chr2L_2770272_2770273 chr2L_2770181_2770191;chr2L_2770273_2770400 98.78 98.11 97.56 98.08 97.30 100.00 98.25 97.56 98.81 100.00 97.30 100.00 100.00 100.00 97.73 95.74 100.00 100.00 100.00 100.00 97.22 100.00 100.00 99.03 100.00 97.56 100.00 100.00 100.00 100.00 96.88 98.18 97.56 97.67 98.21 100.00 100.00 100.00 100.00 97.40 100.00 98.57 96.30 98.15 98.04 98.68 99.01 96.00 97.37 98.75 98.78 98.67 99.07 100.00 97.62 100.00 100.00 89.09 K intron_retention CG15618 chrX - chrX_19755243_19755304 chrX_19755242_19755243;chrX_19755304_19755305 chrX_19753778_19755242;chrX_19755305_19755464 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 2.56 0.00 0.00 0.00 2.67 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 2.50 1.06 0.00 0.00 0.00 0.00 1.59 0.00 1.56 0.00 0.00 1.94 0.00 0.00 0.00 1.69 1.82 0.00 0.00 0.00 0.00 K jcn_only_AD Aldolase,I_chr3R_22083764_22086684,I_chr3R_22086804_22086875 chr3R - chr3R_22083764_22087057;chr3R_22083764_22086879 chr3R_22083764_22086875 chr3R_22083664_22083763;chr3R_22087058_22087313 0.46 0.22 0.44 0.54 0.48 0.54 0.25 0.33 0.46 0.31 0.84 0.27 0.35 0.54 0.65 0.00 1.12 0.22 0.89 0.25 0.48 0.16 0.46 0.46 0.59 0.49 0.72 0.53 0.51 0.64 0.51 0.34 0.24 0.64 0.70 0.94 0.26 0.00 0.18 0.83 0.33 0.36 0.63 0.00 0.00 0.25 0.29 0.42 0.44 0.80 0.50 0.22 1.46 1.12 0.17 0.24 0.57 0.22 N alternative_last_exon Rack1,Snoo,I_chr2L_7918070_7975188 chr2L - chr2L_7974909_7975188;chr2L_7896755_7975188 chr2L_7958714_7975188 chr2L_7892316_7896754 chr2L_7954718_7958713 chr2L_7975189_7975288 4.08 4.55 4.76 3.33 0.00 5.26 5.00 2.70 4.08 0.00 0.00 4.26 4.55 5.26 4.17 3.23 5.56 4.55 4.35 5.77 6.25 3.70 2.44 3.70 4.00 5.00 6.06 4.76 2.27 1.72 5.00 0.00 0.00 2.86 4.76 2.78 2.44 4.17 2.78 1.92 4.76 4.44 5.56 2.70 0.00 0.00 5.26 1.67 4.44 4.00 6.67 5.00 0.00 0.00 4.35 0.00 6.67 3.57 K intron_retention I_chrX_11910759_11910811,CG15735 chrX + chrX_11913359_11913660 chrX_11913358_11913359;chrX_11913660_11913661 chrX_11912604_11913358;chrX_11913661_11913791 3.88 5.63 4.29 5.88 0.00 9.52 2.35 2.35 4.76 0.00 8.51 7.29 0.00 8.89 4.92 2.90 0.00 7.84 3.57 7.46 8.51 2.25 4.26 3.12 2.04 3.39 10.00 5.00 2.47 2.60 4.48 6.06 1.00 6.90 5.77 3.51 2.38 0.00 3.88 5.05 4.60 4.55 0.00 2.63 3.03 3.81 3.03 4.12 7.34 4.65 2.27 5.88 3.70 3.61 5.56 2.78 4.21 2.14 K intron_retention wge chr3R - chr3R_18542387_18542655 chr3R_18542386_18542387;chr3R_18542655_18542656 chr3R_18540256_18542386;chr3R_18542656_18542685 29.55 31.25 NA 36.84 NA NA 43.75 NA 47.62 NA NA 15.00 NA NA NA NA NA NA 45.45 43.75 NA 29.55 26.67 28.57 43.75 NA 30.77 NA 7.69 26.09 35.71 NA 20.59 NA NA 23.53 15.38 NA 41.18 22.86 35.00 55.56 NA 14.29 NA NA NA 19.51 45.45 NA 23.53 NA NA NA NA 23.08 NA NA K alternative_donor CG11266,RI_chr2L_7033019_7034764,I_chr2L_7034274_7035406,I_chr2L_7051093_7051366 chr2L + chr2L_7032836_7032903 chr2L_7032840_7032903 chr2L_7032904_7033018;chr2L_7032797_7032835 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 95.65 94.12 90.91 94.74 96.43 100.00 100.00 91.67 100.00 92.31 87.50 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 94.12 100.00 NA 100.00 88.89 NA 100.00 100.00 94.74 90.91 93.33 NA 90.91 92.31 90.00 100.00 100.00 100.00 91.67 NA NA 94.12 100.00 100.00 NA K intron_retention CG30122,I_chr2R_14526123_14526189 chr2R - chr2R_14520489_14520558 chr2R_14520488_14520489;chr2R_14520558_14520559 chr2R_14519851_14520488;chr2R_14520559_14520629 0.00 0.00 NA 5.88 0.00 NA NA 11.11 3.57 NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 NA 13.79 10.00 0.00 0.00 NA 6.45 10.00 0.00 0.00 11.76 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 NA 0.00 NA 0.00 2.38 0.00 0.00 0.00 0.00 0.00 8.89 0.00 0.00 0.00 0.00 0.00 0.00 12.00 K alternative_acceptor Rph,I_chrX_10644396_10644958,I_chrX_10647710_10648325,RI_chrX_10649048_10651427 chrX - chrX_10644396_10644958 chrX_10644404_10644958 chrX_10644959_10645058;chrX_10644296_10644395 100.00 96.00 94.74 95.45 100.00 89.47 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 87.50 96.43 100.00 93.33 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 93.33 100.00 100.00 94.12 96.55 NA 100.00 100.00 94.74 100.00 100.00 100.00 K alternative_donor I_chr3L_18664773_18665233,GNBP2,I_chr3L_18667579_18667644 chr3L - chr3L_18668078_18668437;chr3L_18668078_18668318 chr3L_18668078_18668478 chr3L_18667645_18668077;chr3L_18668479_18668494 7.69 0.00 5.56 2.70 8.33 0.00 5.88 2.27 12.00 NA 16.67 10.53 10.53 5.26 7.69 4.17 4.76 7.69 3.85 16.28 5.56 9.09 6.67 13.33 25.00 5.56 7.69 14.29 12.50 14.29 14.81 11.11 0.00 3.12 0.00 0.00 25.00 0.00 33.33 20.00 16.67 10.34 18.75 0.00 12.50 7.69 25.00 0.00 6.67 25.00 7.69 7.14 NA 0.00 14.29 6.67 0.00 7.69 K alternative_acceptor mRNA-capping-enzyme,I_chrX_14135349_14135413 chrX - chrX_14135349_14135413 chrX_14135352_14135413 chrX_14135414_14135513;chrX_14135249_14135348 99.42 98.65 100.00 98.73 97.87 100.00 100.00 98.70 99.13 100.00 98.04 100.00 97.78 100.00 100.00 98.31 100.00 100.00 100.00 100.00 100.00 98.63 100.00 100.00 98.53 98.11 98.78 92.59 100.00 98.73 98.04 97.96 99.42 100.00 100.00 98.86 98.95 100.00 100.00 99.08 98.13 99.12 100.00 100.00 99.08 100.00 100.00 99.26 98.97 98.68 100.00 100.00 97.83 100.00 100.00 100.00 99.02 99.00 K alternative_donor CG10165 chr2L - chr2L_19528370_19530268 chr2L_19528370_19530089 chr2L_19528357_19528369;chr2L_19530269_19530277 100.00 NA NA 88.89 NA 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 NA NA NA NA 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA NA 100.00 NA NA 100.00 100.00 NA 83.33 NA NA 100.00 NA NA NA 87.50 NA NA NA NA NA 100.00 NA NA 100.00 K intron_retention NHP2,I_chr3L_14794824_14794939 chr3L - chr3L_14794880_14794939 chr3L_14794879_14794880;chr3L_14794939_14794940 chr3L_14794365_14794879;chr3L_14794940_14795039 0.00 0.00 1.38 0.38 0.87 0.00 0.66 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.86 0.34 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 3.11 5.51 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.51 0.47 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 K jcn_only_AD CG11986,I_chr3R_4841440_4841505 chr3R + chr3R_4841238_4841290 chr3R_4841242_4841290 chr3R_4841291_4841990;chr3R_4841168_4841237 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor Ugt36Bc chr2L + chr2L_16799134_16799680 chr2L_16799134_16799660 chr2L_16799029_16799133;chr2L_16799681_16800520 12.16 NA NA NA NA NA 25.93 NA NA NA NA 3.70 NA NA NA NA NA NA NA 15.38 NA 9.68 8.70 14.29 12.50 NA 15.79 12.16 25.00 13.33 14.29 NA 6.67 NA NA 13.64 NA NA NA 11.11 26.32 5.88 NA 7.69 NA 0.00 NA 5.88 NA NA 6.90 6.25 NA NA NA NA 12.50 NA K intron_retention CG1902,CG30000,I_chr2R_5495525_5495581 chr2R + chr2R_5492117_5492174 chr2R_5492116_5492117;chr2R_5492174_5492175 chr2R_5491750_5492116;chr2R_5492175_5493222 48.05 38.98 52.86 25.26 30.00 44.78 53.02 40.74 47.09 24.00 59.26 60.68 33.33 60.34 52.00 55.21 53.25 48.05 54.67 51.85 51.90 46.79 32.38 43.27 44.12 42.39 39.42 31.88 51.35 50.00 74.84 54.35 53.42 55.86 50.00 54.93 32.41 22.67 42.99 43.36 61.36 53.28 53.33 30.88 42.22 54.74 35.00 66.67 49.07 35.59 52.43 32.88 34.21 38.89 50.46 37.66 35.21 63.27 K jcn_only_AD CG15609,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12902708_12903184;chr2R_12902708_12903198;chr2R_12902708_12903167 chr2R_12902708_12903163 chr2R_12902608_12902707;chr2R_12903199_12903284 50.39 35.48 57.14 53.41 51.85 51.28 57.63 58.16 52.59 51.43 44.00 51.67 50.79 61.90 43.75 45.74 54.35 50.00 46.81 41.10 57.58 62.96 40.00 59.46 68.75 40.48 18.92 NA 52.00 38.46 52.17 45.83 38.71 44.09 51.22 22.22 47.62 60.00 NA 36.62 37.14 43.04 42.86 57.45 NA 62.26 NA 49.15 48.10 61.90 57.45 62.96 NA NA 40.74 45.00 NA 38.24 K intron_retention CG5010 chrX + chrX_17043217_17043866 chrX_17043216_17043217;chrX_17043866_17043867 chrX_17042922_17043216;chrX_17043867_17044680 0.90 0.00 0.00 0.85 1.68 0.00 2.00 2.73 1.85 0.42 0.00 0.69 3.57 1.77 1.64 1.05 2.35 1.02 2.00 2.42 3.54 0.84 0.84 0.18 0.00 0.00 2.13 1.63 1.31 0.00 0.48 0.00 0.00 2.38 0.52 1.14 0.32 0.00 0.00 0.93 0.00 0.90 0.00 2.21 1.04 0.85 1.08 1.34 0.71 0.52 1.32 1.84 1.46 2.01 0.00 0.74 0.83 1.23 K intron_retention Rpn3,CG10492 chr2L + chr2L_19052218_19052278 chr2L_19052217_19052218;chr2L_19052278_19052279 chr2L_19051830_19052217;chr2L_19052279_19053727 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.34 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Prosalpha7 chr2R - chr2R_5734400_5734577 chr2R_5734411_5734577 chr2R_5734578_5734697;chr2R_5734141_5734399 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG4538,Surf6 chr3R - chr3R_15725050_15725335 chr3R_15725049_15725050;chr3R_15725335_15725336 chr3R_15724875_15725049;chr3R_15725336_15725530 100.00 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 K intron_retention gish chr3R + chr3R_12100604_12100684 chr3R_12100603_12100604;chr3R_12100684_12100685 chr3R_12100535_12100603;chr3R_12100685_12100891 100.00 100.00 100.00 100.00 98.65 100.00 100.00 100.00 99.59 100.00 100.00 99.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CycB,I_chr2R_18692089_18692164 chr2R - chr2R_18693381_18693444 chr2R_18693380_18693381;chr2R_18693444_18693445 chr2R_18693172_18693380;chr2R_18693445_18693590 1.90 4.44 3.53 3.15 1.22 0.00 0.00 1.74 2.05 0.00 0.00 1.46 2.13 0.00 1.19 0.00 0.00 1.27 2.86 2.67 0.00 8.47 0.00 2.13 0.00 3.70 6.12 6.06 0.00 0.00 3.33 2.67 1.90 0.88 3.33 7.27 1.89 1.37 5.17 2.61 7.02 2.41 2.99 1.49 0.00 2.11 0.00 1.60 2.80 3.17 2.78 3.39 0.00 2.13 0.00 0.00 0.00 2.15 K alternative_donor CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20824602_20825271;chr2L_20824725_20825271;chr2L_20824494_20825271 chr2L_20824631_20825271 chr2L_20825272_20825366;chr2L_20824482_20824493 30.00 NA 42.86 28.57 NA NA 25.00 33.33 29.41 NA 18.75 33.33 NA 16.67 NA 22.22 NA 30.00 28.57 35.29 16.67 NA NA NA NA 28.57 NA NA 66.67 75.00 27.27 30.00 31.25 40.00 NA 28.57 NA NA NA 50.00 57.14 11.11 16.67 33.33 15.79 50.00 NA 55.56 26.67 NA NA NA NA NA 33.33 NA NA 83.33 K alternative_donor I_chr3R_23749027_23749091,CG5508,E_chr3R_23755071_23758533 chr3R + chr3R_23751130_23751390;chr3R_23751068_23751390 chr3R_23751064_23751390 chr3R_23751391_23751715;chr3R_23750915_23751063 12.50 14.29 25.00 11.11 14.29 11.11 NA 5.00 12.50 50.00 NA 5.88 16.67 26.67 5.56 NA NA 14.29 6.25 0.00 NA 8.33 NA 14.29 NA 12.50 NA NA NA NA 8.33 NA 20.00 5.56 14.29 NA 0.00 NA NA 11.11 NA 26.67 NA NA NA 27.27 0.00 NA 6.25 NA NA NA NA 16.67 12.50 NA 8.33 NA K intron_retention Elp3 chr2L + chr2L_4445137_4445192 chr2L_4445136_4445137;chr2L_4445192_4445193 chr2L_4445068_4445136;chr2L_4445193_4445259 31.46 32.35 25.42 8.57 33.33 36.54 23.53 25.00 29.73 13.33 35.09 26.37 21.43 32.65 39.58 50.85 30.56 31.25 34.78 25.00 45.24 38.71 26.14 20.51 28.26 29.73 35.21 20.00 28.21 24.14 46.81 38.71 31.67 21.74 43.18 36.36 25.00 30.99 33.72 42.86 36.11 35.92 35.42 39.74 25.45 50.98 32.81 52.38 31.46 17.95 44.44 41.67 9.09 21.15 31.25 37.88 13.25 24.56 K alternative_donor CG1623,I_chr2R_5717365_5717896 chr2R - chr2R_5717365_5721013 chr2R_5717365_5720983 chr2R_5717265_5717364;chr2R_5721014_5721052 40.54 35.71 50.00 35.82 41.67 36.96 32.79 30.99 38.53 33.33 44.19 45.90 39.13 55.00 34.48 36.84 22.50 35.00 38.24 37.00 44.44 28.05 63.16 50.00 53.85 40.54 53.33 61.54 61.11 60.00 30.43 41.30 33.33 31.94 37.50 52.63 45.16 47.83 59.09 35.42 46.15 37.50 25.00 38.46 30.00 54.55 55.26 43.40 32.67 47.37 53.33 38.10 58.33 55.00 31.25 50.00 48.89 40.32 N jcn_only_AA CG42394,noncoding_15936,E_chr3R_6675742_6676058 chr3R + chr3R_6677211_6677344;chr3R_6677211_6677262 chr3R_6677211_6677270 chr3R_6677007_6677210;chr3R_6677345_6677430 81.97 76.92 84.09 72.95 100.00 82.14 81.97 74.82 75.81 100.00 77.61 86.10 70.54 82.19 73.27 77.38 75.23 78.79 70.59 85.00 100.00 100.00 77.78 85.98 100.00 74.03 83.51 100.00 100.00 100.00 82.58 80.00 85.48 81.97 81.40 100.00 81.48 70.45 100.00 86.96 83.81 82.05 81.40 78.07 82.30 77.88 84.35 75.22 81.36 76.79 81.98 77.27 83.82 87.74 73.39 80.00 81.12 80.89 K intron_retention CG8157,I_chr2R_11215681_11215840 chr2R - chr2R_11213796_11213855 chr2R_11213795_11213796;chr2R_11213855_11213856 chr2R_11213657_11213795;chr2R_11213856_11213923 0.68 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.94 0.00 0.00 3.03 6.82 4.88 0.00 6.06 1.69 5.71 NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 5.26 NA NA NA NA NA NA NA 3.28 4.76 NA NA NA NA NA 1.35 NA NA NA NA NA 5.26 NA NA NA K intron_retention pan chr4 + chr4_90021_90099 chr4_90020_90021;chr4_90099_90100 chr4_90012_90020;chr4_90100_90225 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA 100.00 NA NA 94.12 NA NA NA NA NA 90.00 NA 100.00 NA 100.00 NA NA NA NA 94.44 NA 100.00 NA NA NA NA NA NA NA K alternative_donor Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19546851_19547916;chr2R_19546876_19547916 chr2R_19547223_19547916 chr2R_19547917_19547942;chr2R_19546810_19546850 92.98 88.00 93.10 95.83 95.24 NA NA 91.30 95.89 NA 89.29 92.73 93.75 96.67 94.29 91.30 96.00 95.00 93.10 88.57 94.12 91.67 87.80 86.67 90.91 95.83 74.07 92.86 NA 85.71 96.77 100.00 96.55 93.48 92.00 94.44 94.59 90.91 96.88 81.82 NA 94.55 NA 93.10 91.67 93.75 90.48 88.00 91.84 91.67 95.45 90.00 77.78 NA 93.94 85.71 95.24 83.33 K intron_retention CG15211,EF_chrX_10666660_10666923 chrX + chrX_10667200_10671993 chrX_10667199_10667200;chrX_10671993_10671994 chrX_10666937_10667199;chrX_10671994_10672161 5.26 NA NA NA NA NA 0.00 15.79 21.74 NA NA 5.26 NA NA NA NA NA NA NA 30.77 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 14.29 NA NA NA NA 0.00 0.00 NA 4.35 NA 9.09 NA NA NA NA 7.14 NA NA NA NA NA 0.00 NA NA NA K alternative_donor CG3287,I_chr2R_2698891_2699406,I_chr2R_2700203_2700285 chr2R + chr2R_2698891_2699406;chr2R_2699349_2699406;chr2R_2698654_2699406 chr2R_2698681_2699406 chr2R_2699407_2699506;chr2R_2698533_2698653 94.74 93.18 97.50 96.67 96.30 95.56 91.67 98.59 94.44 96.30 97.06 94.44 97.06 93.62 96.61 90.67 96.15 94.59 96.36 96.88 97.22 81.16 90.00 91.38 89.66 95.35 92.45 83.33 89.47 94.55 98.08 91.89 92.31 95.38 96.83 94.74 86.49 94.59 91.18 94.85 94.87 94.74 96.55 90.00 92.86 95.89 93.88 94.87 96.20 95.24 93.85 94.87 94.59 94.87 96.36 94.59 96.43 92.00 K intron_retention CG30273 chr2R + chr2R_18555024_18555094 chr2R_18555023_18555024;chr2R_18555094_18555095 chr2R_18554888_18555023;chr2R_18555095_18555445 4.27 0.00 5.88 6.25 0.00 8.70 0.00 6.25 8.51 NA 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 15.38 4.41 0.00 5.26 1.92 1.89 5.56 14.29 16.13 5.88 20.00 0.00 9.09 2.56 4.13 5.88 6.67 0.00 0.00 11.11 3.77 3.28 8.82 6.12 0.00 6.90 4.65 8.51 6.06 5.56 6.98 3.64 0.00 9.09 6.38 0.00 0.00 2.56 2.35 6.41 K intron_retention Ptpmeg,I_chr3L_353688_353782,I_chr3L_355125_355175 chr3L + chr3L_354447_354499 chr3L_354446_354447;chr3L_354499_354500 chr3L_353783_354446;chr3L_354500_355124 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 2.02 0.00 0.00 0.00 0.00 0.00 0.00 2.70 1.74 0.00 0.78 1.98 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.97 0.00 0.00 1.10 0.00 0.00 0.00 0.00 3.70 0.00 0.00 K intron_retention Adf1,CG15908_CG9410 chr2R + chr2R_2549954_2550129 chr2R_2549953_2549954;chr2R_2550129_2550130 chr2R_2549797_2549953;chr2R_2550130_2550262 100.00 95.65 95.65 97.73 100.00 100.00 100.00 100.00 100.00 100.00 94.44 97.56 95.65 95.45 100.00 97.50 100.00 100.00 95.00 100.00 100.00 100.00 97.14 100.00 100.00 96.88 100.00 84.21 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 97.50 95.31 95.45 100.00 100.00 100.00 95.45 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 K alternative_donor tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_562850_562904 chr3R_562850_562902 chr3R_562745_562849;chr3R_562905_562974 89.36 85.29 90.79 88.97 88.73 92.86 88.32 88.69 89.81 92.50 85.54 89.83 89.71 89.04 85.14 86.18 89.53 87.50 89.36 90.87 88.41 89.47 88.89 90.00 90.70 87.34 90.14 92.86 84.72 85.00 87.50 89.58 88.89 89.93 91.67 90.16 88.89 94.74 94.34 91.00 92.98 86.30 79.69 89.90 91.23 86.11 94.74 88.10 89.05 92.98 87.50 93.33 92.45 88.57 87.85 89.29 92.39 85.26 K jcn_only_AD MB8.chr3R.pasa.66,ref1,RI_chr3R_2904130_2904237,RI_chr3R_2904305_2904543,I_chr3R_2904452_2904543 chr3R - chr3R_2904130_2904543 chr3R_2904130_2904237 chr3R_2904030_2904129;chr3R_2904544_2904643 3.10 1.77 3.30 10.95 3.38 2.61 3.39 5.46 2.87 1.83 8.28 4.46 5.71 3.91 2.76 4.08 2.17 2.03 6.09 4.10 3.09 9.96 3.10 2.65 1.65 4.76 6.86 8.24 6.57 10.47 2.86 5.23 2.80 2.46 3.09 4.17 2.34 2.23 1.68 1.29 6.20 3.05 3.64 3.40 4.08 2.63 0.97 3.09 4.31 3.36 5.00 2.40 1.75 2.45 3.86 2.07 1.98 2.56 K intron_retention p47,Aldh-III,I_chr2R_3356541_3356614,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3353713_3353767 chr2R_3353712_3353713;chr2R_3353767_3353768 chr2R_3353284_3353712;chr2R_3353768_3353982 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.23 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Cdk4,RI_chr2R_12471503_12471656 chr2R + chr2R_12467202_12468346;chr2R_12467432_12468346;chr2R_12467241_12468346;chr2R_12467275_12468346;chr2R_12467474_12468346;chr2R_12467225_12468346;chr2R_12467227_12468346;chr2R_12467039_12468346 chr2R_12467261_12468346 chr2R_12468347_12468520;chr2R_12467030_12467038 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 7.69 12.50 0.00 4.76 0.00 0.00 11.11 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27805342_27811232;chr3R_27805342_27811214 chr3R_27805342_27810955 chr3R_27805247_27805341;chr3R_27811233_27811433 100.00 96.67 100.00 98.11 93.33 93.94 100.00 100.00 98.99 100.00 100.00 100.00 97.37 97.92 100.00 100.00 NA 100.00 100.00 100.00 97.44 92.59 100.00 100.00 NA 100.00 100.00 NA 76.00 100.00 97.67 NA 94.59 100.00 95.83 96.97 100.00 96.00 96.97 98.15 NA 97.50 96.15 100.00 NA NA 100.00 100.00 100.00 97.22 98.31 100.00 NA NA 94.74 100.00 100.00 100.00 K cassette shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9754481_9757364 chr2R_9754481_9755660;chr2R_9755855_9757364 chr2R_9755661_9755854 chr2R_9754381_9754480;chr2R_9757365_9757464 100.00 100.00 100.00 100.00 100.00 100.00 99.60 100.00 100.00 100.00 100.00 100.00 100.00 99.45 100.00 99.40 100.00 100.00 100.00 100.00 100.00 99.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.79 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.44 100.00 99.77 100.00 100.00 100.00 100.00 100.00 99.75 100.00 100.00 100.00 100.00 100.00 100.00 99.78 K alternative_donor I_chr2R_17169674_17170491,CG10069,I_chr2R_17169897_17170495,I_chr2R_17170432_17170491,I_chr2R_17171765_17171886 chr2R + chr2R_17170336_17170491;chr2R_17169885_17170491;chr2R_17170070_17170491;chr2R_17169897_17170491 chr2R_17170432_17170491 chr2R_17170492_17170591;chr2R_17169869_17169884 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ac3,I_chr2L_21635211_21637957,I_chr2L_21643253_21646594 chr2L + chr2L_21634610_21634725 chr2L_21634609_21634610;chr2L_21634725_21634726 chr2L_21634420_21634609;chr2L_21634726_21635035 41.89 NA NA 40.00 NA NA 40.00 NA 34.62 NA NA 35.29 NA NA 30.77 42.11 NA NA 43.75 25.00 NA 81.82 45.45 42.86 NA 54.55 41.67 NA 95.00 NA 16.67 NA 41.67 43.75 NA NA 33.33 NA NA 30.77 NA 38.89 NA 91.67 NA 88.89 NA 90.00 40.00 60.00 46.15 NA NA NA 41.67 NA 66.67 NA K intron_retention yps,I_chr3L_12115255_12115627,RI_chr3L_12115255_12115645,I_chr3L_12115255_12115669,E_chr3L_12115874_12116660,I_chr3L_12115877_12115936 chr3L - chr3L_12115255_12115645 chr3L_12115254_12115255;chr3L_12115645_12115646 chr3L_12115155_12115254;chr3L_12115646_12115727 100.00 91.67 100.00 94.12 91.67 NA 92.31 96.67 96.55 NA 94.12 100.00 100.00 100.00 92.86 93.75 100.00 100.00 100.00 96.67 100.00 96.30 93.33 100.00 100.00 90.00 100.00 100.00 100.00 100.00 84.62 100.00 100.00 100.00 90.00 90.00 90.00 100.00 91.67 96.43 92.86 95.83 100.00 95.00 83.33 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 94.74 100.00 100.00 95.45 K intron_retention Fem-1,RI_chr2R_16552969_16554423,noncoding_8200 chr2R - chr2R_16552574_16554423 chr2R_16552573_16552574;chr2R_16554423_16554424 chr2R_16552291_16552573;chr2R_16554424_16554523 7.41 10.53 7.41 8.82 0.00 0.00 4.55 8.33 5.41 4.00 15.79 10.53 0.00 5.56 11.43 7.69 9.09 4.35 10.00 5.26 12.50 4.08 4.55 11.11 0.00 0.00 12.20 9.09 17.86 0.00 0.00 0.00 8.00 3.70 8.70 0.00 4.88 0.00 6.25 5.41 0.00 8.70 16.67 8.11 10.53 5.56 8.00 11.76 8.89 0.00 3.23 9.52 12.50 8.00 9.52 7.41 10.00 0.00 K jcn_only_AA Elongin-C,I_chr2R_15332885_15333223,I_chr2R_15332885_15333260,I_chr2R_15332885_15333452,I_chr2R_15333309_15333432,I_chr2R_15336252_15338966 chr2R - chr2R_15332885_15333432 chr2R_15333309_15333432 chr2R_15333433_15333532;chr2R_15332785_15332884 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.33 0.00 0.52 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 K intron_retention I_chr2R_5171635_5172166,TXBP181-like chr2R - chr2R_5176805_5176865 chr2R_5176804_5176805;chr2R_5176865_5176866 chr2R_5176452_5176804;chr2R_5176866_5177677 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 1.54 0.00 0.00 0.00 5.88 8.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Mgat1 chr2R - chr2R_16447800_16447857 chr2R_16447799_16447800;chr2R_16447857_16447858 chr2R_16447712_16447799;chr2R_16447858_16447940 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 K jcn_only_AA CG31919,CG33995,F_chr2L_5045484_5046146 chr2L + chr2L_5043384_5044306;chr2L_5043384_5045821 chr2L_5043384_5044582 chr2L_5043377_5043383 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD gem,I_chr2R_6015083_6015660,I_chr2R_6023182_6023246 chr2R + chr2R_6021523_6022972 chr2R_6022905_6022972 chr2R_6022973_6023177 0.50 0.00 0.00 0.00 1.27 2.33 0.79 0.00 0.50 0.00 2.22 1.69 2.53 1.61 0.00 0.00 0.00 30.49 1.82 0.90 1.75 0.50 0.35 0.00 0.00 3.28 1.63 1.05 0.00 0.59 3.28 1.35 0.00 0.00 1.54 1.69 0.32 3.70 0.36 1.06 0.00 0.50 0.00 0.00 0.38 1.33 1.46 0.00 1.20 0.79 0.00 0.00 0.00 0.68 1.22 2.46 0.46 0.33 K intron_retention CG12918,E_chr2R_5938650_5939342 chr2R - chr2R_5938845_5939038 chr2R_5938844_5938845;chr2R_5939038_5939039 chr2R_5938366_5938844;chr2R_5939039_5939206 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.68 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6891,RI_chrX_18670889_18674713,I_chrX_18673576_18674713,RI_chrX_18674227_18674713 chrX + chrX_18674646_18674713 chrX_18674645_18674646;chrX_18674713_18674714 chrX_18674559_18674645;chrX_18674714_18674813 100.00 NA NA 100.00 NA NA 100.00 91.67 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA NA 100.00 100.00 100.00 100.00 K intron_retention Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5006553_5007804 chr2R_5006552_5006553;chr2R_5007804_5007805 chr2R_5006405_5006552;chr2R_5007805_5007864 91.30 90.32 87.50 90.32 100.00 94.74 100.00 96.43 97.67 96.55 95.83 33.93 100.00 93.75 89.47 88.00 81.82 85.00 95.00 96.00 100.00 88.10 88.37 82.93 87.80 90.91 96.55 96.88 92.00 94.29 87.50 92.59 93.10 88.57 95.24 86.11 90.48 82.05 74.42 94.83 96.43 90.91 100.00 76.67 79.55 93.10 91.30 100.00 97.30 90.32 89.66 90.48 95.83 79.17 94.74 82.61 88.89 100.00 K intron_retention Nmnat chr3R + chr3R_20772018_20772605 chr3R_20772017_20772018;chr3R_20772605_20772606 chr3R_20771916_20772017;chr3R_20772606_20772656 36.99 70.00 60.00 45.83 NA NA 39.13 31.03 32.43 30.77 26.67 40.00 36.36 47.06 41.18 50.00 56.25 52.38 36.36 43.33 NA 37.14 27.59 40.00 30.77 23.08 33.33 63.64 32.26 50.00 51.72 40.91 53.85 30.00 NA 26.92 37.50 NA 36.84 40.00 44.00 44.00 30.77 39.29 36.36 34.15 44.44 34.38 45.16 36.36 33.33 30.77 23.81 12.50 36.36 33.33 32.26 40.74 K alternative_donor CG5001,I_chr2L_1191535_1191648 chr2L + chr2L_1191535_1191598 chr2L_1191539_1191598 chr2L_1191599_1191909;chr2L_1191435_1191534 6.06 NA 13.33 5.88 NA 6.67 NA 6.25 5.41 NA NA 4.17 NA NA NA 5.56 6.25 NA 0.00 9.52 NA NA 6.25 NA NA NA NA NA NA 4.55 6.67 NA 6.67 5.56 NA NA 11.76 NA NA 3.85 7.69 3.23 0.00 NA NA 4.76 7.14 4.35 6.90 NA 4.76 NA NA NA NA NA NA 6.25 K intron_retention CG6293,Bruce chr3R - chr3R_6135421_6135620 chr3R_6135420_6135421;chr3R_6135620_6135621 chr3R_6134904_6135420;chr3R_6135621_6136111 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.15 0.95 0.32 0.00 0.19 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.58 0.00 0.27 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.20 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32138 chr3L + chr3L_14062028_14062991 chr3L_14062027_14062028;chr3L_14062991_14062992 chr3L_14061908_14062027;chr3L_14062992_14063021 5.32 3.59 6.72 1.53 3.87 5.98 7.69 6.36 4.34 6.25 3.66 12.50 7.14 5.11 4.27 5.93 6.08 7.21 8.00 5.45 4.11 3.60 4.02 3.52 4.12 6.30 4.22 5.33 3.70 7.84 7.14 3.90 7.14 6.37 6.82 0.00 4.82 5.95 6.18 6.18 4.84 6.03 4.20 3.63 3.08 5.79 4.43 9.84 5.32 3.80 5.37 5.00 1.57 3.15 6.36 4.43 3.81 5.33 K intron_retention REI_chrX_16172581_16177702,CG3560 chrX + chrX_16180483_16180597 chrX_16180482_16180483;chrX_16180597_16180598 chrX_16180321_16180482;chrX_16180598_16180645 0.20 0.45 0.31 0.70 0.00 0.74 0.65 0.25 0.39 0.00 0.00 0.54 0.00 0.29 0.52 0.66 0.00 0.00 0.00 0.49 0.63 1.71 0.20 0.18 0.64 0.42 0.83 0.53 0.00 0.00 1.38 0.00 0.00 0.60 0.00 0.37 0.00 0.00 0.00 0.00 0.46 0.78 0.82 0.00 0.00 0.00 0.27 0.00 0.78 0.00 0.20 0.00 0.00 0.00 0.00 0.15 0.18 0.81 K intron_retention spin,I_chr2R_12013288_12013847 chr2R + chr2R_12013288_12013847 chr2R_12013287_12013288;chr2R_12013847_12013848 chr2R_12013188_12013287;chr2R_12013848_12013947 100.00 NA 92.86 100.00 100.00 90.91 100.00 100.00 100.00 NA 91.67 100.00 100.00 93.75 92.31 100.00 88.89 100.00 92.86 100.00 100.00 88.89 NA NA NA 90.91 NA NA NA NA 100.00 NA NA 87.50 NA NA NA NA NA NA NA 95.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA 92.31 NA NA NA K alternative_acceptor CG1646,RI_chr3R_24638061_24638116,RI_chr3R_24638209_24638280,I_chr3R_24641816_24641874 chr3R + chr3R_24638209_24638426 chr3R_24638209_24638280 chr3R_24638117_24638208;chr3R_24638427_24638567 2.24 0.00 3.90 3.30 4.00 2.53 4.26 1.25 3.90 2.94 0.00 3.38 3.23 3.33 1.32 1.37 6.45 0.00 1.69 1.71 0.00 2.78 7.41 3.06 2.70 1.98 1.90 1.79 4.60 1.02 5.88 2.06 3.12 2.35 1.02 2.68 5.77 1.75 4.17 1.85 2.60 2.26 4.17 5.06 2.11 1.44 1.92 0.89 2.08 4.00 0.99 4.35 1.82 1.23 1.22 1.41 1.41 2.24 K intron_retention CG6700 chr2L - chr2L_10840797_10840866 chr2L_10840796_10840797;chr2L_10840866_10840867 chr2L_10840061_10840796;chr2L_10840867_10842273 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 5.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6394546_6419543,I_chr2R_6404486_6419543,R_chr2R_6408775_6419537,I_chr2R_6409616_6419543,I_chr2R_6413368_6414281,I_chr2R_6419625_6419686,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6413368_6419543 chr2R_6413367_6413368;chr2R_6419543_6419544 chr2R_6413309_6413367;chr2R_6419544_6419624 78.95 85.00 80.95 92.00 92.86 89.47 97.30 87.50 91.30 66.67 88.24 95.83 69.57 78.57 95.00 88.37 87.50 68.42 78.95 58.33 76.92 64.71 83.72 73.91 71.43 96.00 78.57 87.50 61.11 66.67 80.00 50.00 65.38 82.76 83.33 86.36 80.00 77.27 68.97 73.53 55.56 86.49 92.86 85.19 60.00 58.82 47.62 58.82 83.72 37.50 80.00 85.00 60.00 50.00 83.33 56.25 56.25 65.00 K jcn_only_AA Fancl chr3R - chr3R_5877305_5877364 chr3R_5877308_5877364 chr3R_5877365_5877428;chr3R_5877254_5877304 87.15 NA NA NA NA NA NA NA 94.29 NA NA 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD mod(r),I_chrX_515823_515874,RI_chrX_515831_515923,I_chrX_516392_517480 chrX + chrX_515823_515874 chrX_515831_515874 chrX_515875_515974;chrX_515763_515822 100.00 100.00 NA 96.30 95.24 100.00 97.44 100.00 95.74 NA 100.00 95.35 100.00 NA 100.00 97.06 NA 95.65 100.00 100.00 100.00 NA 100.00 92.31 NA 91.30 100.00 NA NA NA 97.37 NA NA 100.00 NA NA 97.56 96.97 97.50 100.00 NA 97.78 100.00 100.00 NA 100.00 96.77 NA 100.00 100.00 100.00 100.00 94.12 96.00 NA 100.00 97.06 100.00 K intron_retention CG2698,I_chr3R_3828169_3828941,I_chr3R_3828880_3828941,I_chr3R_3829483_3829715,I_chr3R_3830586_3830981 chr3R + chr3R_3829483_3829555 chr3R_3829482_3829483;chr3R_3829555_3829556 chr3R_3829383_3829482;chr3R_3829556_3829683 51.47 70.00 46.15 71.43 NA NA 73.33 78.57 54.55 NA NA 47.83 60.00 71.43 75.00 68.75 77.78 69.23 83.33 68.75 NA 43.75 57.14 26.32 30.00 64.71 38.10 50.00 35.71 42.86 37.04 NA 46.15 87.50 40.00 30.77 NA 46.67 29.41 41.67 50.00 66.67 66.67 38.89 41.67 40.00 NA 52.94 63.64 33.33 38.10 58.33 NA NA 72.73 40.00 58.33 NA K alternative_acceptor qkr54B chr2R + chr2R_13357223_13358081 chr2R_13357223_13358071 chr2R_13357143_13357222;chr2R_13358082_13358391 8.33 13.33 12.50 5.26 6.67 10.53 8.70 3.23 11.63 NA 6.67 9.30 0.00 5.56 7.41 8.82 5.56 NA 3.23 14.29 12.50 5.26 8.33 0.00 NA 8.33 8.70 12.50 NA NA 6.12 NA NA 7.14 11.76 NA 0.00 NA 4.55 8.33 NA 5.00 12.50 5.56 NA NA 13.33 NA 14.29 4.76 9.52 NA NA 13.33 11.76 7.69 15.00 NA N multi_cassette Hr78,I_chr3L_21490089_21490390,CG33214 chr3L - chr3L_21488969_21490390 chr3L_21488969_21489520;chr3L_21489842_21489919;chr3L_21490008_21490390 chr3L_21489521_21489841;chr3L_21489920_21490007 chr3L_21488699_21488968;chr3L_21490391_21490490 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 74.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD glo,I_chr3R_7644679_7644739,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7644683_7644880;chr3R_7644683_7644932;chr3R_7644683_7644739;chr3R_7644683_7644743 chr3R_7644683_7644908 chr3R_7644583_7644682;chr3R_7644933_7644980 3.00 0.99 4.08 4.44 4.55 1.32 1.46 0.69 1.83 2.56 2.04 1.18 2.82 3.49 4.85 4.02 0.00 NA 3.06 3.32 2.00 5.03 4.97 3.53 2.41 3.57 3.80 1.59 8.75 2.60 3.15 3.36 6.20 6.83 3.16 1.77 2.30 0.00 1.87 0.99 3.37 2.94 3.23 2.14 7.06 0.78 4.12 1.16 6.51 1.15 3.45 0.00 4.07 1.10 2.86 4.00 3.70 2.84 K jcn_only_AA Klc,I_chr3L_12741779_12743062,I_chr3L_12741783_12742943,I_chr3L_12741838_12743062 chr3L - chr3L_12741779_12743062;chr3L_12741783_12743062 chr3L_12741838_12743062 chr3L_12743063_12743083;chr3L_12741738_12741778 0.00 0.00 1.78 0.00 0.79 0.00 1.52 0.00 0.23 1.75 0.64 0.44 1.14 1.41 0.00 0.00 0.00 0.00 0.00 1.15 0.00 1.18 0.00 0.00 1.14 7.20 1.11 0.00 1.22 0.00 0.67 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.79 4.17 1.05 0.00 0.68 0.00 0.00 0.60 0.00 0.80 0.00 0.00 0.80 0.00 1.37 0.00 0.00 0.00 1.12 K intron_retention CG31712,I_chr2L_9935570_9935951,CREI_chr2L_9938511_9938564,RI_chr2L_9942818_9944294,I_chr2L_9944682_9947179 chr2L - chr2L_9935570_9937237 chr2L_9935569_9935570;chr2L_9937237_9937238 chr2L_9935486_9935569;chr2L_9937238_9937510 54.84 35.48 70.00 36.96 56.25 62.50 60.00 50.00 69.64 61.90 58.33 62.50 50.00 52.17 65.38 75.00 68.18 54.55 55.00 37.70 61.11 56.10 59.38 51.72 92.86 33.33 50.00 68.18 36.84 50.00 50.00 51.52 38.33 60.47 64.00 75.00 50.00 50.00 69.23 68.89 41.67 65.96 54.55 54.84 29.79 57.14 50.00 48.44 65.00 45.45 45.16 42.86 44.44 42.86 71.43 58.33 57.58 32.35 K jcn_only_AA CG7770,I_chr3L_19916995_19917092 chr3L + chr3L_19916995_19917092 chr3L_19916995_19917081 chr3L_19916927_19916994;chr3L_19917093_19917157 100.00 99.20 100.00 100.00 100.00 100.00 99.69 100.00 99.79 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.58 99.56 99.80 99.53 100.00 99.61 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.38 100.00 99.68 99.38 100.00 100.00 100.00 100.00 100.00 100.00 99.76 100.00 99.60 99.48 100.00 99.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.79 100.00 K intron_retention I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10061775_10061966 chr2R_10061774_10061775;chr2R_10061966_10061967 chr2R_10061605_10061774;chr2R_10061967_10062077 100.00 96.30 100.00 97.06 100.00 96.43 100.00 97.83 97.50 100.00 100.00 97.83 100.00 100.00 100.00 97.96 100.00 94.74 100.00 100.00 100.00 100.00 96.97 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 97.44 100.00 97.44 95.65 100.00 100.00 98.80 100.00 97.78 95.65 100.00 95.65 97.67 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention POSH,RI_chr2R_13458667_13458738,Rab4,I_chr2R_13461027_13461136 chr2R + chr2R_13456683_13456750 chr2R_13456682_13456683;chr2R_13456750_13456751 chr2R_13456304_13456682;chr2R_13456751_13456859 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG11699,CG11696,CG11695 chrX + chrX_11464810_11464899 chrX_11464810_11464871 chrX_11464741_11464809;chrX_11464900_11464968 1.01 0.96 0.00 0.85 1.27 0.00 1.23 1.00 1.34 0.93 1.12 1.56 0.00 1.27 0.61 4.11 1.54 0.00 2.22 1.35 0.00 2.22 0.84 0.33 0.91 0.00 1.85 0.68 1.28 1.84 3.81 1.74 0.71 1.59 2.01 1.02 0.79 0.78 0.92 2.87 1.20 0.78 1.16 0.00 1.34 0.66 1.14 1.75 0.00 1.89 1.02 0.00 0.42 1.01 0.85 0.71 0.65 1.13 K intron_retention Tor chr2L + chr2L_13005012_13005066 chr2L_13005011_13005012;chr2L_13005066_13005067 chr2L_13004519_13005011;chr2L_13005067_13005287 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.52 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 K cassette chic,RI_chr2L_5976783_5980950,I_chr2L_5978244_5979411,I_chr2L_5979527_5979599,I_chr2L_5979705_5979818,I_chr2L_5979705_5979941,RI_chr2L_5979705_5979951,I_chr2L_5979705_5979953,I_chr2L_5979705_5980025,I_chr2L_5979705_5980213,I_chr2L_5979705_5980370,I_chr2L_5979705_5980558,I_chr2L_5979705_5980632,I_chr2L_5979705_5980639,RI_chr2L_5979705_5980734 chr2L - chr2L_5976783_5980950 chr2L_5976783_5979411;chr2L_5979705_5980950 chr2L_5979412_5979704 chr2L_5976683_5976782;chr2L_5980951_5981025 99.96 99.96 100.00 99.92 99.95 99.83 99.96 99.97 99.98 100.00 100.00 99.98 100.00 100.00 100.00 100.00 100.00 99.95 99.91 99.98 99.95 99.86 99.97 99.93 99.94 99.95 99.96 99.94 99.70 100.00 99.96 99.94 99.84 99.97 100.00 100.00 99.97 99.96 99.97 99.95 100.00 99.94 99.95 99.96 100.00 99.91 99.95 100.00 99.98 99.96 100.00 99.95 99.95 100.00 99.96 100.00 100.00 99.97 N alternative_donor CG32594 chrX + chrX_14927496_14927638;chrX_14927033_14927638;chrX_14927381_14927638 chrX_14926607_14927638 chrX_14927639_14928125;chrX_14925576_14926606 92.34 92.63 92.66 87.30 95.42 93.12 91.71 86.63 90.40 95.37 88.55 89.58 91.82 87.76 92.18 79.35 93.89 93.75 90.77 92.08 92.09 72.73 92.34 93.00 92.04 97.01 88.83 85.44 84.77 95.81 95.60 92.52 93.24 91.25 90.70 92.96 94.32 93.44 94.12 91.22 94.08 91.15 92.31 91.67 95.45 94.55 92.63 94.48 89.67 92.41 89.91 90.53 94.07 93.79 95.26 91.41 93.33 96.09 K jcn_only_AD CG4293,RI_chrX_423385_423664,I_chrX_423385_423676 chrX - chrX_423385_423664;chrX_423385_423676 chrX_423385_423442 chrX_423285_423384;chrX_423677_423764 100.00 100.00 96.77 100.00 100.00 100.00 97.50 100.00 100.00 95.00 100.00 98.15 100.00 95.00 100.00 95.24 NA 96.67 100.00 97.92 100.00 100.00 100.00 94.29 NA 100.00 97.22 100.00 100.00 100.00 95.65 96.15 100.00 100.00 100.00 93.55 98.68 100.00 98.04 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 97.22 100.00 100.00 NA 93.75 NA 100.00 100.00 100.00 100.00 K intron_retention mRpL15 chr3L - chr3L_20429015_20429085 chr3L_20429014_20429015;chr3L_20429085_20429086 chr3L_20428195_20429014;chr3L_20429086_20429251 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 4.76 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 7.41 0.00 0.00 4.17 0.00 7.41 0.00 0.00 8.33 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5004,E_chrX_17024712_17024996 chrX + chrX_17025193_17028257 chrX_17025192_17025193;chrX_17028257_17028258 chrX_17024997_17025192;chrX_17028258_17028703 0.92 0.92 0.60 0.26 0.00 1.81 1.25 1.52 1.23 0.93 0.00 0.60 1.65 2.02 0.98 1.54 0.99 0.76 1.47 0.87 0.78 0.41 0.74 1.41 0.72 0.00 1.01 2.15 0.58 0.88 0.38 0.82 0.54 0.49 1.10 0.71 0.80 0.86 0.39 1.78 1.62 1.10 1.47 0.84 2.06 0.93 0.67 1.36 0.99 0.93 0.92 1.55 0.00 0.00 0.63 0.65 0.93 1.39 K intron_retention 14-3-3epsilon,I_chr3R_14068632_14073155,RI_chr3R_14074062_14074138,I_chr3R_14074016_14074138 chr3R + chr3R_14073874_14073936 chr3R_14073873_14073874;chr3R_14073936_14073937 chr3R_14073693_14073873;chr3R_14073937_14074015 0.86 0.30 0.00 0.67 0.85 0.94 0.37 0.83 0.89 0.00 0.36 0.92 0.88 1.46 1.24 0.58 0.62 0.56 0.81 0.85 0.00 0.74 1.31 0.95 0.80 0.00 1.80 5.04 3.66 1.29 0.45 2.39 0.94 1.22 0.86 1.40 0.71 0.80 0.83 1.05 1.01 0.78 0.00 0.45 1.56 1.50 0.97 2.01 0.55 0.88 1.36 0.73 0.45 0.92 1.24 0.90 0.69 2.41 K intron_retention CG2225,Ef2b,I_chr2L_21681559_21681619,I_chr2L_21681559_21681621,I_chr2L_21681559_21681649,I_chr2L_21681559_21681721,I_chr2L_21681559_21682037,I_chr2L_21681559_21737600,I_chr2L_21681561_21682041,I_chr2L_21681805_21682038 chr2L - chr2L_21681559_21682038 chr2L_21681558_21681559;chr2L_21682038_21682039 chr2L_21681461_21681558;chr2L_21682039_21682137 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.03 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.05 0.04 0.12 0.00 0.11 0.10 0.11 0.04 0.03 0.00 0.00 0.04 0.00 0.05 0.00 0.00 0.04 0.07 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.03 0.00 0.00 0.03 0.02 0.00 K intron_retention Tina-1,I_chr2R_20828961_20829772,E_chr2R_20851190_20852094 chr2R - chr2R_20828578_20828644 chr2R_20828577_20828578;chr2R_20828644_20828645 chr2R_20828160_20828577;chr2R_20828645_20828964 1.83 0.94 1.89 3.59 1.64 1.45 3.54 2.03 2.03 0.85 1.19 2.74 2.28 2.72 2.10 2.23 2.82 2.42 1.83 1.54 2.64 3.09 1.75 2.12 0.49 2.96 2.65 0.00 3.94 0.75 1.14 1.02 1.80 1.73 2.05 2.12 1.63 1.37 1.55 1.68 1.32 1.90 0.98 1.09 1.61 1.66 2.89 1.52 1.90 1.87 1.98 0.84 2.80 1.87 1.18 1.03 2.44 1.51 K jcn_only_AA CG7843,I_chr2R_1972736_1972822 chr2R - chr2R_1972525_1972590 chr2R_1972537_1972590 chr2R_1972591_1972735;chr2R_1972352_1972524 87.39 85.34 92.00 94.92 92.31 86.84 90.00 81.63 84.78 85.86 89.13 92.19 80.00 88.89 87.95 72.22 86.00 87.80 72.22 87.04 85.11 87.39 89.42 89.10 88.55 86.15 90.12 93.83 86.50 86.23 94.74 89.33 89.07 83.95 90.52 80.61 89.61 84.06 83.77 89.96 86.90 87.10 76.32 94.07 88.96 85.59 83.33 86.96 85.15 95.05 89.63 89.16 88.52 88.41 80.00 84.81 86.54 92.99 K intron_retention Pak,RI_chr3R_2181143_2181934 chr3R + chr3R_2180318_2180635 chr3R_2180317_2180318;chr3R_2180635_2180636 chr3R_2180249_2180317;chr3R_2180636_2180902 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 29.41 NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA 5.88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N cassette dpr3 chr2L - chr2L_2062300_2066519 chr2L_2062300_2065610;chr2L_2065744_2066519 chr2L_2065611_2065743 chr2L_2061975_2062299;chr2L_2066520_2066597 100.00 100.00 100.00 87.29 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA JhI-21,I_chr2L_12055360_12055714 chr2L - chr2L_12055334_12055901 chr2L_12055360_12055901 chr2L_12055902_12055978;chr2L_12055328_12055333 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.69 100.00 100.00 100.00 K cassette cora,I_chr2R_15125277_15130573,I_chr2R_15125940_15130208,I_chr2R_15129291_15129988 chr2R + chr2R_15129291_15130208;chr2R_15125940_15130208 chr2R_15125940_15129678,chr2R_15129291_15129678;chr2R_15129901_15130208 chr2R_15129679_15129900 chr2R_15125887_15125939;chr2R_15130209_15130308 100.00 100.00 100.00 99.61 99.72 100.00 99.72 100.00 100.00 99.72 99.77 100.00 100.00 100.00 100.00 100.00 100.00 99.78 100.00 100.00 100.00 99.60 100.00 100.00 99.82 99.68 100.00 100.00 99.88 100.00 99.72 100.00 100.00 100.00 99.82 99.85 100.00 100.00 99.91 99.91 100.00 99.78 100.00 100.00 99.91 99.88 99.87 99.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.86 99.89 100.00 K intron_retention CG8079,I_chr2R_11109323_11109403 chr2R + chr2R_11109486_11109548 chr2R_11109485_11109486;chr2R_11109548_11109549 chr2R_11109446_11109485;chr2R_11109549_11109930 72.08 70.00 NA 83.33 NA 87.50 NA 75.00 56.25 NA NA NA NA NA NA NA NA NA NA 71.43 NA NA 75.00 NA NA 87.50 NA NA NA NA 66.67 NA NA 70.00 NA NA 72.73 NA NA NA NA 58.33 NA NA NA NA NA NA 75.00 NA 45.45 NA NA NA NA NA NA NA K intron_retention CG5674 chr2L + chr2L_17969519_17972262 chr2L_17969518_17969519;chr2L_17972262_17972263 chr2L_17969372_17969518;chr2L_17972263_17974832 77.78 NA NA NA NA NA 77.78 77.78 90.91 NA 100.00 90.91 NA NA NA NA NA NA 88.89 NA 100.00 88.89 NA NA NA NA NA 66.67 69.23 NA NA NA 46.15 70.00 NA NA NA NA NA 75.00 NA 63.64 NA NA NA NA NA 63.64 90.91 NA NA NA NA NA NA NA NA NA K intron_retention Manf chr3R + chr3R_12175522_12175607 chr3R_12175521_12175522;chr3R_12175607_12175608 chr3R_12175397_12175521;chr3R_12175608_12175749 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 1.47 1.48 1.28 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.39 0.59 0.00 0.41 0.00 0.00 0.61 0.93 0.69 0.00 0.25 0.55 0.00 0.00 0.00 0.00 0.00 0.41 0.43 0.00 K intron_retention RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522932_523360 chrX_522931_522932;chrX_523360_523361 chrX_522849_522931;chrX_523361_523436 93.33 NA NA 94.12 NA 80.00 97.44 100.00 90.91 NA NA 100.00 91.67 100.00 NA 90.91 100.00 NA NA 100.00 NA 92.31 100.00 NA 100.00 100.00 91.67 NA 90.91 NA NA 93.75 88.89 100.00 88.89 NA NA NA NA 88.89 94.44 100.00 NA NA 91.67 92.86 NA 100.00 93.33 88.89 88.89 NA 100.00 NA NA NA 90.00 87.50 K alternative_acceptor CG17471,RI_chr4_1213397_1214333,RI_chr4_1213397_1216053,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1213289_1213331;chr4_1213279_1213331 chr4_1213275_1213331 chr4_1213332_1213341;chr4_1213122_1213274 3.58 5.88 7.14 7.69 NA 9.09 0.00 5.41 4.76 NA NA 6.67 5.56 0.00 0.00 2.13 0.00 9.09 0.00 3.03 NA NA 7.69 5.00 0.00 14.29 6.25 NA NA 0.00 0.00 0.00 8.33 0.00 0.00 11.11 0.00 11.11 7.14 12.50 0.00 3.45 7.14 0.00 0.00 2.86 0.00 13.33 2.56 4.55 3.70 0.00 7.69 4.55 0.00 4.35 0.00 3.45 K intron_retention MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17399683_17401733 chr2R_17399682_17399683;chr2R_17401733_17401734 chr2R_17399598_17399682;chr2R_17401734_17401802 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 94.12 95.24 NA 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG10089 chr3L - chr3L_13462170_13462301 chr3L_13462170_13462235 chr3L_13462053_13462169;chr3L_13462302_13462312 95.44 NA 86.21 95.24 NA 96.30 91.67 92.68 86.05 100.00 NA 91.30 100.00 85.71 100.00 100.00 95.65 94.44 92.86 88.24 100.00 91.30 96.67 92.00 NA 100.00 87.50 NA 100.00 NA 79.41 NA 92.31 96.08 NA NA NA 95.83 93.33 100.00 70.00 96.00 95.00 100.00 100.00 NA 91.67 95.24 97.67 96.55 96.55 NA NA NA 93.55 NA 97.73 95.65 K intron_retention sd,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15709764_15713628 chrX_15709763_15709764;chrX_15713628_15713629 chrX_15709695_15709763;chrX_15713629_15713756 7.14 NA NA NA NA NA NA 14.29 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention htt,I_chr3R_24527763_24528033,I_chr3R_24542203_24543363 chr3R + chr3R_24558205_24558922 chr3R_24558204_24558205;chr3R_24558922_24558923 chr3R_24557936_24558204;chr3R_24558923_24560070 0.00 3.45 0.00 0.00 0.00 3.57 2.33 0.00 0.00 NA 0.00 0.00 6.25 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.41 NA 0.00 3.77 4.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 K intron_retention MB8.chr3R.pasa.66,CG1091,RI_chr3R_2910204_2910255,RI_chr3R_2910490_2910686,RI_chr3R_2911041_2911135,RI_chr3R_2946518_2946663 chr3R - chr3R_2910204_2910264 chr3R_2910203_2910204;chr3R_2910264_2910265 chr3R_2910104_2910203;chr3R_2910265_2910355 0.00 0.00 1.92 0.00 0.00 0.00 0.00 2.94 2.44 0.00 0.00 2.35 0.00 0.00 0.00 2.27 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 3.33 7.41 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 1.28 2.50 2.02 0.00 2.90 0.00 0.00 1.64 0.00 2.22 2.78 1.23 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG30122,I_chr2R_14526123_14526189 chr2R - chr2R_14526123_14526323 chr2R_14526123_14526189 chr2R_14526023_14526122;chr2R_14526324_14526753 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 1.23 2.15 2.17 0.00 0.00 0.00 0.00 0.29 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 1.60 0.69 0.00 0.00 1.95 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 K intron_retention CG10949 chr2L - chr2L_20416107_20416163 chr2L_20416106_20416107;chr2L_20416163_20416164 chr2L_20415137_20416106;chr2L_20416164_20416918 0.00 NA 0.00 7.41 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 9.09 NA NA 0.00 6.25 NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA NA 0.00 NA NA 0.00 K jcn_only_AD GXIVsPLA2,I_chr3L_15948429_15948487,I_chr3L_15950680_15950738 chr3L + chr3L_15948429_15948487;chr3L_15948415_15948487 chr3L_15948410_15948487 chr3L_15948488_15948587;chr3L_15948329_15948409 65.00 NA NA 65.00 NA NA NA NA NA NA NA 65.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 37.78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 75.86 NA NA NA NA NA NA NA NA NA K intron_retention RI_chrX_502548_513324,CG13366,I_chrX_508729_508806,I_chrX_509497_513324,I_chrX_509727_511407,I_chrX_509727_511477,noncoding_21186,I_chrX_509834_511407,CRE_chrX_509851_511307,I_chrX_510004_511307,I_chrX_510004_511407,I_chrX_513176_513324,I_chrX_513519_513631 chrX - chrX_509727_511407 chrX_509726_509727;chrX_511407_511408 chrX_509715_509726;chrX_511408_511507 96.88 90.00 NA 100.00 NA NA 100.00 91.67 100.00 NA NA NA NA NA 100.00 93.75 NA NA 100.00 100.00 NA NA NA NA NA NA 88.89 NA NA NA 100.00 NA NA 92.86 NA NA NA NA NA NA NA 92.86 NA NA NA NA NA NA 90.91 NA NA NA NA NA NA NA NA NA K jcn_only_AA Ac78C,F_chr3L_21141024_21153737 chr3L - chr3L_21140529_21140594 chr3L_21140532_21140594 chr3L_21140595_21141033;chr3L_21140234_21140528 81.54 93.62 79.66 81.54 73.53 85.19 78.95 81.48 89.42 87.50 80.77 75.68 80.77 82.76 90.91 84.00 84.62 78.26 80.95 78.79 78.57 83.61 81.43 88.71 87.50 NA 82.05 80.00 79.69 79.41 83.87 86.27 86.52 81.16 80.88 90.38 85.05 80.70 81.32 80.92 94.03 83.00 76.47 80.00 85.71 85.07 84.38 84.31 85.37 75.86 84.06 80.65 87.10 NA 90.62 75.68 76.67 81.00 K alternative_acceptor 14-3-3epsilon,I_chr3R_14068632_14073155,RI_chr3R_14074062_14074138,I_chr3R_14074016_14074138 chr3R + chr3R_14073874_14073936;chr3R_14073874_14073954;chr3R_14073874_14073942 chr3R_14073874_14073939 chr3R_14073693_14073873;chr3R_14073955_14074015 9.86 10.69 9.24 10.44 11.04 10.44 11.03 11.26 9.24 10.67 11.40 9.15 8.77 8.47 8.77 9.98 8.72 10.16 10.00 9.68 8.74 11.69 10.36 9.24 11.38 12.09 6.21 7.64 10.67 10.56 10.48 9.57 11.06 9.86 9.48 13.97 9.80 9.49 9.29 10.06 10.36 8.99 10.45 9.17 8.67 9.25 10.08 10.84 9.29 8.71 8.36 7.75 9.13 10.71 9.68 10.07 8.92 10.14 K intron_retention CG10576,I_chr3L_5756877_5757511,snoRNA:Psi28S-1837c,snoRNA:Psi28S-1837b,snoRNA:Psi28S-1837a,psnoRNA:CG10576-a,I_chr3L_5758117_5758186 chr3L - chr3L_5756877_5757533 chr3L_5756876_5756877;chr3L_5757533_5757534 chr3L_5756777_5756876;chr3L_5757534_5757611 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.18 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.32 0.48 0.00 0.00 0.18 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG8468 chr2R + chr2R_10107616_10108112;chr2R_10107651_10108112;chr2R_10107621_10108112 chr2R_10107548_10108112 chr2R_10108113_10108270;chr2R_10107405_10107547 80.90 83.67 80.89 81.16 80.90 79.71 65.75 82.12 77.96 83.33 75.65 78.45 72.73 79.87 79.86 72.29 81.20 80.58 75.14 73.79 80.17 85.07 85.00 83.46 69.86 75.40 77.48 86.75 83.93 95.70 77.01 90.28 92.16 78.82 80.54 72.97 80.58 85.09 82.73 84.31 76.87 81.72 79.53 83.08 89.63 86.30 83.10 86.36 78.85 80.26 85.91 76.06 88.64 85.19 76.63 87.02 87.50 92.52 K jcn_only_AD CG6796 chr2R + chr2R_12889896_12889958 chr2R_12889904_12889958 chr2R_12889959_12891107;chr2R_12889688_12889895 5.00 NA NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA 3.12 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CdGAPr chr2L - chr2L_19782826_19791763 chr2L_19782825_19782826;chr2L_19791763_19791764 chr2L_19782421_19782825;chr2L_19791764_19791863 5.13 7.14 6.25 3.23 NA 6.90 16.13 2.38 5.77 0.00 6.67 11.54 0.00 3.57 3.57 7.46 5.56 7.14 5.00 8.00 0.00 7.69 6.33 5.26 13.16 12.90 10.53 3.45 10.87 5.45 0.00 0.00 0.00 4.17 4.76 8.00 2.00 5.71 0.00 9.52 0.00 8.33 0.00 3.64 5.88 5.26 5.00 4.29 5.56 0.00 4.92 0.00 0.00 NA 0.00 NA 0.00 7.41 K intron_retention sut1,I_chr2R_3970908_3972035,sut2 chr2R + chr2R_3973147_3973204 chr2R_3973146_3973147;chr2R_3973204_3973205 chr2R_3972552_3973146;chr2R_3973205_3973417 0.00 0.00 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG4199,I_chrX_1962457_1964222 chrX - chrX_1965614_1965872;chrX_1965614_1967409;chrX_1965614_1967149 chrX_1965614_1966582 chrX_1965393_1965613;chrX_1967410_1967460 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Nedd4,I_chr3L_17534127_17534409,I_chr3L_17534504_17535990,I_chr3L_17535485_17536604,I_chr3L_17536186_17536604,I_chr3L_17536713_17536777,I_chr3L_17536813_17536863 chr3L + chr3L_17534504_17535299 chr3L_17534503_17534504;chr3L_17535299_17535300 chr3L_17534419_17534503;chr3L_17535300_17535330 15.00 NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA 5.56 NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG8334,I_chr3L_19870731_19870822 chr3L + chr3L_19872580_19872635 chr3L_19872579_19872580;chr3L_19872635_19872636 chr3L_19871933_19872579;chr3L_19872636_19872802 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 10.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon Fer1HCH,I_chr3R_26212319_26213496,I_chr3R_26212834_26213185,I_chr3R_26213132_26213185 chr3R - chr3R_26212319_26213496 chr3R_26213273_26213496,chr3R_26213365_26213496,chr3R_26213325_26213496 chr3R_26211292_26212318 chr3R_26213186_26213272 chr3R_26213497_26213534 99.59 99.73 99.75 98.95 99.41 99.65 99.84 99.85 99.66 99.35 99.08 99.52 99.59 99.73 99.75 99.85 99.42 99.68 99.55 99.66 99.71 99.61 99.57 99.44 99.15 99.68 99.73 99.06 98.45 98.77 99.81 98.36 98.45 99.67 99.19 99.63 99.72 99.57 99.74 99.35 97.92 99.87 99.66 99.73 98.86 99.02 99.55 97.50 99.76 99.76 99.42 99.65 99.74 98.62 99.57 99.44 99.72 97.94 K jcn_only_AD CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27044867;chr3R_27044771_27045188;chr3R_27044771_27045257;chr3R_27044771_27045132;chr3R_27044771_27045027;chr3R_27044771_27045110;chr3R_27044771_27044990;chr3R_27044771_27044895 chr3R_27044771_27044831 chr3R_27044671_27044770;chr3R_27045258_27045273 1.21 0.63 0.00 0.65 0.15 0.00 2.36 0.32 0.64 3.70 0.58 0.40 0.95 0.46 0.49 1.21 0.00 1.49 1.07 0.45 0.00 3.10 4.00 5.45 0.00 0.80 12.50 3.57 1.97 4.08 0.26 0.85 2.87 0.81 1.27 4.71 7.89 10.00 8.06 2.21 3.17 0.59 0.35 8.23 0.34 2.36 6.82 0.95 0.15 8.51 11.76 8.33 1.87 6.25 0.61 7.14 4.21 0.83 K intron_retention CG12703 chrX + chrX_19645171_19645380 chrX_19645170_19645171;chrX_19645380_19645381 chrX_19644833_19645170;chrX_19645381_19645579 14.71 19.44 11.43 32.88 12.00 15.38 20.95 17.65 12.50 18.97 5.68 17.46 20.97 20.99 14.71 12.03 14.63 14.29 9.76 13.23 10.34 13.33 17.65 13.70 13.21 9.84 13.95 17.78 25.37 15.00 15.31 25.88 10.36 13.19 15.22 8.05 11.11 13.89 12.07 28.23 16.51 17.03 9.33 19.35 14.15 12.26 16.22 20.11 17.42 13.24 15.62 13.73 24.14 20.37 13.79 12.16 17.95 16.57 K mutually_exclusive RhoGAP71E,I_chr3L_15583097_15589765 chr3L + chr3L_15594396_15597935,chr3L_15598381_15599758 chr3L_15594396_15594742,chr3L_15595616_15599758 chr3L_15597936_15598380 chr3L_15594743_15595615 chr3L_15594333_15594395;chr3L_15599759_15600439 88.16 90.91 87.90 74.73 93.16 94.41 84.24 83.04 89.18 98.50 89.83 89.31 84.72 87.39 86.06 90.58 89.69 86.44 86.61 87.03 86.18 73.86 87.81 88.84 86.71 91.01 88.72 90.51 87.64 93.08 91.45 87.97 86.26 88.79 90.45 88.16 88.70 89.45 86.32 92.11 94.48 88.10 87.72 86.70 86.19 85.26 85.93 89.42 87.87 93.96 90.37 91.67 88.27 90.40 88.69 85.40 84.43 86.74 K intron_retention sd,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15717261_15717325 chrX_15717260_15717261;chrX_15717325_15717326 chrX_15717220_15717260;chrX_15717326_15717515 0.00 NA NA 0.00 NA NA 14.29 0.00 7.41 NA 0.00 16.67 NA NA NA 5.88 NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 7.14 NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 11.11 NA NA NA K jcn_only_AD gbb chr2R + chr2R_19739125_19739205 chr2R_19739129_19739205 chr2R_19739206_19740772;chr2R_19739106_19739124 24.79 NA NA NA NA NA 35.29 NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention I_chrX_1798310_1798525,eIF2B-epsilon chrX - chrX_1815149_1815213 chrX_1815148_1815149;chrX_1815213_1815214 chrX_1814862_1815148;chrX_1815214_1816502 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.83 K intron_retention CG31158,CI_chr3R_18432763_18433113,CG31159 chr3R + chr3R_18431293_18432918 chr3R_18431292_18431293;chr3R_18432918_18432919 chr3R_18431075_18431292;chr3R_18432919_18433030 0.00 4.00 0.00 0.00 0.00 4.17 0.00 2.38 0.00 NA NA 18.92 0.00 0.00 0.00 0.00 0.00 6.25 5.26 3.23 0.00 33.33 0.00 0.00 5.88 0.00 0.00 0.00 8.33 0.00 0.00 0.00 10.53 0.00 6.67 4.55 0.00 0.00 NA 4.76 0.00 2.70 0.00 0.00 0.00 0.00 0.00 3.03 0.00 4.76 0.00 0.00 NA 5.88 3.33 5.56 0.00 0.00 K alternative_donor CG9399,I_chr3R_5403032_5403329 chr3R - chr3R_5399318_5399524;chr3R_5399318_5399511;chr3R_5399318_5399863 chr3R_5399318_5399515 chr3R_5399076_5399317;chr3R_5399864_5399874 22.50 NA NA NA NA NA 25.00 NA 33.33 NA NA NA NA NA NA 0.00 NA NA NA 20.00 NA NA NA 20.00 NA NA NA NA NA NA 25.00 NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA 20.00 NA NA NA NA NA 25.00 NA K intron_retention PNUTS,I_chr2L_870553_871317 chr2L + chr2L_871739_871805 chr2L_871738_871739;chr2L_871805_871806 chr2L_871641_871738;chr2L_871806_872080 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 5.71 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ade2 chr2L - chr2L_6045527_6045920 chr2L_6045526_6045527;chr2L_6045920_6045921 chr2L_6044428_6045526;chr2L_6045921_6046003 6.70 4.26 3.33 9.52 4.00 3.92 7.14 4.48 3.64 0.00 0.00 4.10 2.22 0.00 7.58 8.06 4.76 5.77 9.52 4.88 2.27 39.13 11.54 11.76 NA 4.84 10.53 NA 28.57 12.90 9.26 0.00 12.90 5.56 16.00 16.67 9.38 5.88 7.69 12.50 17.65 5.59 4.76 21.43 0.00 10.53 NA 16.67 6.25 20.00 16.00 6.25 7.41 NA 3.39 NA 0.00 9.68 K intron_retention betaInt-nu chr2L + chr2L_21053645_21054993 chr2L_21053644_21053645;chr2L_21054993_21054994 chr2L_21053578_21053644;chr2L_21054994_21055744 0.00 7.41 0.00 4.35 0.00 6.25 3.57 3.03 0.00 0.00 0.00 0.00 0.00 5.71 0.00 4.48 2.70 0.00 0.00 1.59 0.00 NA NA 6.67 0.00 0.00 0.00 7.14 17.65 3.85 0.00 NA 0.00 5.26 0.00 0.00 0.00 NA 0.00 12.50 0.00 0.00 4.00 6.67 NA 0.00 0.00 0.00 1.89 NA 7.32 0.00 0.00 NA 2.56 NA 0.00 0.00 K jcn_only_AA Amun,I_chrX_11607839_11608272,I_chrX_11607842_11608105,I_chrX_11607842_11608125,RI_chrX_11607842_11608272 chrX - chrX_11607722_11607787;chrX_11607718_11607787 chrX_11607631_11607787 chrX_11607788_11607838;chrX_11606802_11607630 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3797,I_chr3L_19054399_19054486 chr3L - chr3L_19055036_19055102 chr3L_19055035_19055036;chr3L_19055102_19055103 chr3L_19054841_19055035;chr3L_19055103_19055871 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Cap-H2 chr3R + chr3R_6587339_6587565 chr3R_6587338_6587339;chr3R_6587565_6587566 chr3R_6587172_6587338;chr3R_6587566_6587747 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 5.56 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 K intron_retention Hel25E,I_chr2L_5540301_5540396 chr2L - chr2L_5540301_5540424 chr2L_5540300_5540301;chr2L_5540424_5540425 chr2L_5540201_5540300;chr2L_5540425_5540496 69.09 74.07 69.57 68.57 72.22 68.75 81.58 70.97 80.95 66.67 78.57 68.42 89.47 77.78 80.00 73.68 65.00 65.00 80.95 78.00 76.47 61.90 66.67 66.67 62.50 88.24 50.91 70.00 78.57 76.67 49.23 69.57 80.65 70.00 61.90 68.42 69.39 50.00 50.00 77.61 69.09 68.18 65.00 48.98 56.52 66.67 60.61 66.67 76.00 73.53 63.83 69.57 66.67 63.64 78.26 61.36 61.29 75.86 K intron_retention MCPH1,RI_chr2R_7790917_7791377 chr2R - chr2R_7784320_7784613 chr2R_7784319_7784320;chr2R_7784613_7784614 chr2R_7784277_7784319;chr2R_7784614_7785982 87.32 78.00 88.89 98.18 78.12 82.35 100.00 93.33 89.87 72.73 95.83 87.50 97.73 91.89 93.55 91.30 88.89 87.88 89.74 97.83 95.83 95.74 87.32 86.89 86.21 96.88 79.37 72.58 86.57 84.44 92.86 89.55 80.00 89.09 82.05 87.76 78.95 82.93 82.72 80.47 92.45 94.20 87.88 78.12 73.24 83.33 84.31 82.14 93.85 83.33 86.11 90.00 72.09 84.78 97.37 80.33 73.33 70.00 K intron_retention CG16940,I_chr3L_212740_212843,I_chr3L_212783_212843,noncoding_9585,Kaz1-ORFA_Kaz1-ORFB chr3L + chr3L_212785_212843 chr3L_212784_212785;chr3L_212843_212844 chr3L_212761_212784;chr3L_212844_212943 66.67 64.00 70.37 66.67 70.83 53.85 53.33 60.00 71.43 70.00 52.38 63.04 45.00 63.16 58.82 78.57 72.22 66.67 64.00 64.00 52.00 81.58 72.09 80.00 72.22 73.08 75.86 68.00 94.12 57.14 76.00 NA 60.00 70.97 66.67 96.30 55.10 52.00 76.67 68.89 NA 59.57 56.25 58.82 NA 73.33 66.67 66.67 64.29 78.95 90.91 73.33 50.00 72.73 76.00 80.00 55.00 33.33 K intron_retention Doa,I_chr3R_24715823_24718923,I_chr3R_24747391_24747896 chr3R + chr3R_24741137_24742147 chr3R_24741136_24741137;chr3R_24742147_24742148 chr3R_24740662_24741136;chr3R_24742148_24743179 83.97 NA NA NA NA NA 90.91 NA 83.33 NA NA 71.43 NA NA NA NA NA NA NA 42.11 NA 92.86 80.00 88.89 NA NA NA NA NA NA NA NA 69.23 88.89 NA 63.64 87.50 NA NA 84.62 NA NA NA NA NA NA NA NA 80.00 NA 88.89 NA NA NA NA NA NA NA K intron_retention srp,I_chr3R_11826508_11826910 chr3R + chr3R_11828046_11828128 chr3R_11828045_11828046;chr3R_11828128_11828129 chr3R_11827892_11828045;chr3R_11828129_11829749 2.56 2.41 2.00 2.13 2.11 3.09 3.60 2.51 2.09 0.00 3.42 2.08 2.09 4.97 4.39 2.21 2.67 3.53 3.83 3.60 1.92 3.27 2.16 1.03 2.56 3.80 4.47 11.40 6.20 4.51 3.68 1.49 4.47 2.47 2.88 1.72 2.49 2.34 1.46 2.10 5.13 2.37 2.65 1.64 1.97 5.00 3.60 2.81 3.57 4.39 2.42 1.01 4.08 2.50 2.48 1.67 3.91 5.12 K alternative_acceptor CG8478,CREF_chr3R_5589662_5589762 chr3R + chr3R_5589658_5589762;chr3R_5589658_5589759 chr3R_5589658_5589747 chr3R_5589562_5589657;chr3R_5589763_5589862 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 5.00 3.03 2.13 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 1.61 1.96 0.00 3.33 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 NA 1.75 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814174;chr2R_2814327_2814894;chr2R_2815654_2816013;chr2R_2816342_2816577;chr2R_2816779_2817459;chr2R_2817604_2817753 chr2R_2814175_2814326;chr2R_2814895_2815653;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817460_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 50.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention exd chrX + chrX_15888317_15888379 chrX_15888316_15888317;chrX_15888379_15888380 chrX_15887998_15888316;chrX_15888380_15888638 0.00 0.00 0.61 0.90 0.00 0.00 0.46 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.61 0.54 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.69 3.03 0.00 0.00 0.00 0.00 0.00 0.79 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.98 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG11504 chr3R + chr3R_25823929_25823996 chr3R_25823929_25823992 chr3R_25823519_25823928;chr3R_25823997_25825464 100.00 100.00 100.00 94.12 100.00 NA 100.00 100.00 95.83 90.91 100.00 95.83 100.00 NA 100.00 100.00 100.00 100.00 NA 96.15 87.50 100.00 100.00 100.00 92.86 90.00 94.74 100.00 85.71 91.67 90.00 100.00 95.00 100.00 100.00 88.89 96.67 94.44 96.15 100.00 100.00 95.24 NA 100.00 100.00 93.75 92.31 100.00 88.89 96.00 100.00 100.00 94.12 100.00 90.00 92.31 94.44 100.00 K intron_retention Sep1 chrX + chrX_21231549_21231615 chrX_21231548_21231549;chrX_21231615_21231616 chrX_21231183_21231548;chrX_21231616_21232715 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG8839,I_chr2R_8229288_8229488,I_chr2R_8229288_8231538 chr2R - chr2R_8229288_8231968;chr2R_8229288_8232025;chr2R_8229288_8231964 chr2R_8229288_8231966 chr2R_8229188_8229287;chr2R_8232026_8232112 2.78 1.82 3.42 1.77 2.78 2.35 3.30 1.87 2.44 4.44 1.89 2.18 4.00 2.94 2.67 1.91 3.70 2.48 1.29 2.94 2.15 3.45 3.45 2.90 1.69 2.78 2.17 4.48 2.78 2.22 1.78 1.47 2.94 3.05 4.00 2.22 3.17 2.27 2.56 2.63 5.45 3.01 4.55 4.11 3.66 2.17 4.44 5.66 2.76 0.00 3.64 1.69 1.82 0.00 1.82 3.85 4.23 4.14 K intron_retention shi,RI_chrX_15786633_15786860,RE_chrX_15793108_15795563 chrX + chrX_15786394_15786860 chrX_15786393_15786394;chrX_15786860_15786861 chrX_15786314_15786393;chrX_15786861_15786960 91.67 78.95 95.83 86.67 NA 85.71 87.10 97.50 96.30 NA NA 85.00 94.12 96.00 96.30 92.31 100.00 100.00 90.00 91.67 91.67 100.00 92.00 90.00 88.89 95.24 88.89 NA 86.67 92.86 96.97 NA 90.00 95.83 88.89 89.47 87.50 75.00 NA 82.61 83.33 89.74 89.47 86.36 NA 78.95 100.00 95.00 95.56 NA 95.83 NA NA 100.00 94.44 NA NA 76.47 K intron_retention I_chrX_19573364_19573474,Mer,E_chrX_19584965_19587100,CG14229 chrX - chrX_19586275_19586333 chrX_19586274_19586275;chrX_19586333_19586334 chrX_19586065_19586274;chrX_19586334_19587282 14.81 12.12 12.50 11.43 20.00 19.44 16.67 18.06 14.46 20.83 16.67 18.57 15.38 19.51 21.43 16.92 12.50 20.00 17.50 16.09 16.67 14.58 20.00 14.29 16.67 10.91 14.55 12.50 14.63 12.77 20.83 13.79 7.78 10.14 14.29 11.11 14.55 16.67 9.23 15.79 14.75 11.76 15.79 16.22 14.81 16.88 11.11 11.58 14.86 10.17 13.79 8.33 9.68 24.00 16.28 19.51 18.92 8.79 K alternative_donor RpL8,I_chr3L_2587513_2587750,I_chr3L_2587600_2587750,RI_chr3L_2587690_2587750,I_chr3L_2589746_2592161 chr3L + chr3L_2587600_2587750;chr3L_2587514_2587750 chr3L_2587690_2587750 chr3L_2587751_2587850;chr3L_2587500_2587513 0.04 0.08 0.00 0.04 0.00 0.00 0.04 0.04 0.03 0.00 0.03 0.00 0.09 0.03 0.00 0.04 0.00 0.03 0.00 0.04 0.03 0.13 0.05 0.03 0.00 0.00 0.03 0.04 0.07 0.08 0.12 0.06 0.08 0.07 0.14 0.10 0.00 0.00 0.02 0.06 0.12 0.03 0.04 0.07 0.03 0.14 0.08 0.10 0.06 0.08 0.06 0.08 0.04 0.21 0.07 0.04 0.03 0.00 K jcn_only_AD Ac76E,I_chr3L_19966672_19966735,chr3L_19968880_19969189.0 chr3L + chr3L_19968576_19969190 chr3L_19968714_19969190 chr3L_19969191_19969416 19.23 NA NA 19.23 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD RpL17,I_chrX_6637182_6638207,RI_chrX_6637182_6637528,I_chrX_6637182_6637973,snoRNA:Psi28S-1232 chrX - chrX_6637182_6638178;chrX_6637182_6638141;chrX_6637182_6637982 chrX_6637182_6638228 chrX_6637093_6637181;chrX_6638229_6638235 29.89 23.76 25.24 26.21 21.58 27.18 15.15 30.53 22.56 75.00 16.35 20.22 12.30 22.22 26.72 24.18 23.08 17.36 29.70 25.82 24.18 68.47 28.26 28.70 29.89 17.29 50.57 69.66 41.35 72.30 35.96 79.31 86.84 31.82 54.90 62.89 21.11 23.75 32.62 76.24 80.33 26.69 23.64 68.68 61.59 74.31 39.53 85.33 33.87 51.46 24.18 23.73 77.71 34.74 28.91 37.31 53.93 85.36 K intron_retention CG2177,I_chr4_334269_334329,I_chr4_334269_334505,I_chr4_334439_334505 chr4 - chr4_334269_334329 chr4_334268_334269;chr4_334329_334330 chr4_334169_334268;chr4_334330_334429 90.91 NA NA 90.00 NA NA NA 92.86 90.91 NA NA 90.91 NA NA NA 76.47 NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 75.00 NA NA NA 88.89 NA NA 93.75 NA NA NA NA NA 80.00 NA NA NA K intron_retention His4r chr3R + chr3R_10451564_10451747 chr3R_10451563_10451564;chr3R_10451747_10451748 chr3R_10451547_10451563;chr3R_10451748_10451951 38.18 NA NA 46.67 NA NA 53.33 36.36 40.00 NA NA NA NA NA 9.09 NA NA NA NA 28.57 NA NA NA NA NA NA NA NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_donor CG10353,I_chrX_11775936_11778830,I_chrX_11778617_11778830,RI_chrX_11780885_11780988 chrX - chrX_11775936_11777234;chrX_11775936_11776058;chrX_11775936_11777220;chrX_11775936_11777133 chrX_11775936_11776142 chrX_11775836_11775935;chrX_11777235_11777654 23.33 23.33 20.59 17.50 14.71 19.35 12.00 18.60 20.65 6.67 16.00 23.33 17.39 21.43 17.50 18.37 13.79 14.29 11.90 24.32 23.08 31.58 26.83 23.33 24.00 14.29 13.51 23.53 44.44 30.00 16.67 33.33 29.55 17.86 38.10 24.32 12.24 26.67 30.30 23.08 22.73 26.23 14.71 15.15 39.13 25.71 27.78 31.03 24.24 23.81 19.44 26.32 31.58 23.53 32.26 26.09 21.74 33.33 K intron_retention CG1444,CG1514,Ykt6 chrX + chrX_7804818_7804885 chrX_7804817_7804818;chrX_7804885_7804886 chrX_7804742_7804817;chrX_7804886_7805226 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.41 0.00 0.00 0.00 1.12 0.00 0.00 1.62 2.91 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.54 0.00 0.00 0.00 0.00 0.00 0.16 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 K jcn_only_AA Aats-val chr2R + chr2R_9086425_9086478 chr2R_9086425_9086465 chr2R_9086375_9086424;chr2R_9086479_9086689 5.72 NA 13.04 11.11 NA 5.00 NA NA 6.45 NA NA 15.00 NA NA 11.54 NA NA NA NA 0.00 NA NA NA NA NA 4.55 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA 3.57 NA NA NA NA NA 4.17 NA NA NA K intron_retention pgant5,I_chr2L_5074530_5077534,I_chr2L_5075830_5077076,I_chr2L_5079575_5093241 chr2L - chr2L_5074530_5077076 chr2L_5074529_5074530;chr2L_5077076_5077077 chr2L_5074430_5074529;chr2L_5077077_5077176 0.00 0.00 3.57 2.78 0.00 0.00 0.00 2.74 0.00 1.85 0.00 0.00 5.71 2.08 0.00 4.17 0.00 0.00 0.00 2.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 6.67 2.08 0.00 0.00 0.00 0.00 0.00 2.08 2.22 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG16965,escl chr2L + chr2L_11991272_11991329 chr2L_11991271_11991272;chr2L_11991329_11991330 chr2L_11990813_11991271;chr2L_11991330_11991519 0.00 NA NA 16.67 NA NA 11.76 0.00 7.41 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 3.03 NA 0.00 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA 13.33 7.14 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 N jcn_only_AD Pvf2 chr2L - chr2L_7083729_7084481 chr2L_7083729_7083829 chr2L_7083186_7083728;chr2L_7084482_7084625 0.00 NA 0.00 0.00 NA 0.00 23.64 0.00 16.28 52.17 NA 16.85 NA 20.00 0.00 15.53 0.00 NA 0.00 0.00 NA 60.34 0.00 NA NA 0.00 33.33 60.00 44.44 48.39 0.00 40.00 0.00 0.00 18.60 40.00 NA NA NA 34.55 36.84 0.00 0.00 31.11 NA 0.00 NA 38.24 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 K alternative_acceptor Dsp1,I_chrX_16228447_16229355,I_chrX_16231287_16231413 chrX + chrX_16228447_16230299;chrX_16228447_16230323 chrX_16228447_16230320 chrX_16228347_16228446;chrX_16230324_16230776 68.52 66.67 60.87 68.85 68.00 67.50 71.93 64.47 61.22 55.88 66.67 68.24 67.50 70.21 73.17 75.36 69.70 61.54 66.04 71.56 72.22 56.10 69.49 65.91 73.33 73.33 63.83 55.56 76.00 62.86 68.29 73.91 72.00 68.49 75.86 71.05 68.52 66.67 62.50 65.57 71.43 68.83 77.78 66.67 60.00 69.70 69.70 68.75 67.82 70.45 65.62 71.05 68.97 77.78 69.77 75.00 67.65 57.14 K jcn_only_AA CG8009,CG18628 chr3L + chr3L_10631595_10631665 chr3L_10631595_10631653 chr3L_10631534_10631594;chr3L_10631666_10631734 18.75 25.29 20.41 11.96 22.22 9.80 14.75 23.29 20.65 21.21 28.00 22.48 18.75 9.43 16.00 9.72 25.00 22.50 21.57 15.13 19.57 22.00 16.30 16.41 9.20 28.26 17.76 10.67 14.29 14.89 32.08 11.67 10.20 19.44 22.08 14.29 17.82 23.81 16.42 25.29 22.92 18.75 24.44 19.05 19.05 16.03 17.12 23.21 13.46 14.88 11.40 17.39 16.84 24.79 28.57 18.75 17.21 21.21 K intron_retention CG31720,F_chr2L_10234951_10235484 chr2L - chr2L_10235806_10236030 chr2L_10235805_10235806;chr2L_10236030_10236031 chr2L_10235727_10235805;chr2L_10236031_10236256 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.76 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.56 0.00 NA NA NA NA NA NA NA NA K alternative_acceptor spen,I_chr2L_187184_187481,I_chr2L_200676_200752 chr2L + chr2L_200676_200752 chr2L_200676_200741 chr2L_200576_200675;chr2L_200753_200852 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 99.05 100.00 97.22 99.01 100.00 97.62 100.00 100.00 100.00 97.73 97.67 100.00 100.00 100.00 98.61 100.00 100.00 100.00 100.00 98.53 98.36 100.00 100.00 100.00 100.00 98.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 95.00 100.00 100.00 98.15 100.00 100.00 100.00 K jcn_only_AA CG31169,I_chr3R_18209085_18209133 chr3R + chr3R_18209227_18209283 chr3R_18209227_18209280 chr3R_18209173_18209226;chr3R_18209284_18209921 84.75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.78 NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG42533,EI_chr2L_7473200_7473297,RI_chr2L_7473200_7473419,F_chr2L_7476906_7476978 chr2L - chr2L_7473200_7473297 chr2L_7473199_7473200;chr2L_7473297_7473298 chr2L_7473100_7473199;chr2L_7473298_7473397 30.21 25.00 35.00 22.73 NA 35.29 29.63 31.03 25.00 NA NA 12.12 20.83 23.33 NA 29.41 25.00 23.08 30.43 26.67 NA 14.29 33.33 40.00 NA NA 26.67 NA 50.00 13.33 33.33 35.71 42.86 33.33 46.15 NA NA NA NA 37.50 31.58 28.57 35.71 33.33 NA 34.78 40.00 30.00 29.73 20.83 17.65 NA NA NA 38.89 NA 30.77 20.83 K intron_retention I_chr3R_23749027_23749091,CG5508,E_chr3R_23755071_23758533 chr3R + chr3R_23755868_23755925 chr3R_23755867_23755868;chr3R_23755925_23755926 chr3R_23755703_23755867;chr3R_23755926_23756920 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.05 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563485_567573;chr3R_563461_567573 chr3R_563503_567573 chr3R_567574_568885;chr3R_563195_563460 62.86 66.67 53.57 82.00 53.33 45.83 34.48 56.52 67.07 86.67 40.91 59.70 76.67 62.86 64.52 76.47 60.00 63.33 63.64 60.00 54.17 70.37 58.97 72.41 62.50 71.88 69.70 68.75 55.56 58.33 77.78 63.64 55.56 61.54 43.75 70.00 66.67 72.73 43.33 57.78 43.48 65.57 54.17 60.00 52.38 73.91 40.00 66.67 63.08 69.57 45.83 75.00 33.33 60.00 75.00 64.00 65.52 58.62 K intron_retention shi,RI_chrX_15786633_15786860,RE_chrX_15793108_15795563 chrX + chrX_15796151_15796222 chrX_15796150_15796151;chrX_15796222_15796223 chrX_15796011_15796150;chrX_15796223_15796365 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 4.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention squ,grp,I_chr2L_16697644_16698961,R_chr2L_16698072_16698138 chr2L + chr2L_16680651_16680705 chr2L_16680650_16680651;chr2L_16680705_16680706 chr2L_16680608_16680650;chr2L_16680706_16681457 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 NA 0.00 0.00 0.00 0.00 4.76 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 5.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pgk chr2L - chr2L_2748256_2748319 chr2L_2748255_2748256;chr2L_2748319_2748320 chr2L_2747311_2748255;chr2L_2748320_2748741 0.52 0.00 0.00 1.79 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 2.70 0.00 0.58 0.47 0.31 0.00 2.73 0.78 0.76 0.60 0.00 3.32 4.33 3.37 1.02 1.44 0.55 0.00 0.68 0.00 1.80 0.93 0.93 0.69 0.95 2.45 0.00 0.00 1.31 1.21 1.29 0.00 0.49 0.67 1.40 1.04 1.54 0.00 0.52 0.00 0.49 0.00 0.00 K jcn_only_AA orb2,I_chr3L_8942860_8947477 chr3L - chr3L_8942851_8947032 chr3L_8942860_8947032 chr3L_8947033_8947269;chr3L_8942760_8942850 97.02 100.00 88.46 95.24 NA NA 96.67 100.00 94.64 96.00 95.45 100.00 NA 100.00 97.44 96.88 100.00 NA NA 93.48 NA 100.00 100.00 90.91 NA NA 100.00 88.00 97.06 100.00 100.00 NA 100.00 96.97 NA 96.43 96.92 96.88 92.50 93.33 93.10 93.48 NA 100.00 NA 100.00 96.00 97.62 97.78 93.10 97.06 100.00 95.00 NA 100.00 96.43 100.00 100.00 K intron_retention noncoding_21514,CG4025 chrX + chrX_1971873_1971940 chrX_1971872_1971873;chrX_1971940_1971941 chrX_1971485_1971872;chrX_1971941_1972488 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 7.94 0.00 0.00 0.00 0.00 2.04 0.00 1.80 0.00 0.00 0.67 1.02 0.93 0.95 0.82 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 1.79 0.00 0.00 0.00 K intron_retention Df31,RE_chr2L_21628206_21629662,I_chr2L_21628206_21629666,I_chr2L_21628210_21628515,I_chr2L_21628210_21628944,I_chr2L_21628210_21629216,EI_chr2L_21628210_21629715,REI_chr2L_21628210_21629884,I_chr2L_21628224_21629666,I_chr2L_21628734_21629666 chr2L - chr2L_21628210_21629884 chr2L_21628209_21628210;chr2L_21629884_21629885 chr2L_21628124_21628209;chr2L_21629885_21629918 97.59 98.31 98.15 99.35 95.83 98.00 99.68 98.15 98.65 96.83 99.25 96.59 97.39 98.80 98.58 99.69 99.50 98.62 99.58 98.28 98.92 80.56 97.14 98.25 100.00 98.64 96.77 95.24 79.63 90.00 99.33 89.55 89.04 98.15 96.43 100.00 93.44 96.67 90.91 88.89 90.14 98.02 97.59 92.41 90.00 94.79 94.12 91.54 98.72 97.10 100.00 98.95 95.24 93.33 96.32 98.00 98.57 95.71 K intron_retention Rpp30,I_chr2L_258887_271628 chr2L - chr2L_251925_251978 chr2L_251924_251925;chr2L_251978_251979 chr2L_251856_251924;chr2L_251979_252166 6.06 NA NA NA NA NA NA 0.00 NA NA NA 6.25 NA NA NA NA NA NA NA 18.75 NA 6.67 NA 6.67 NA NA NA NA NA NA 40.00 0.00 NA NA NA NA NA NA NA NA NA 12.50 NA NA 0.00 11.76 11.11 0.00 NA NA 5.88 NA 0.00 NA NA NA 3.57 5.56 K intron_retention CG6439,I_chr3R_17843815_17844345,RI_chr3R_17844601_17844713 chr3R - chr3R_17844439_17844501 chr3R_17844438_17844439;chr3R_17844501_17844502 chr3R_17844346_17844438;chr3R_17844502_17844549 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CDase chr3R + chr3R_26286512_26288536;chr3R_26286617_26288536;chr3R_26286611_26288536;chr3R_26286631_26288536 chr3R_26286613_26288536 chr3R_26288537_26288691;chr3R_26286221_26286511 15.38 NA NA 12.50 NA NA NA NA 28.57 0.00 NA 18.18 NA NA 0.00 NA NA NA NA NA NA NA 23.08 7.69 10.00 NA 28.57 NA 22.22 NA NA NA 18.18 22.22 37.50 22.73 NA NA 16.67 3.57 NA NA NA 11.11 NA 14.29 NA 12.50 18.18 15.38 11.11 10.00 23.08 9.09 NA 25.00 NA 10.00 K alternative_acceptor CG4699 chr3R + chr3R_11624190_11624445 chr3R_11624190_11624442 chr3R_11623809_11624189;chr3R_11624446_11624758 69.62 63.64 63.64 64.71 NA NA 76.92 100.00 86.36 45.45 87.50 72.00 NA NA 100.00 66.67 NA NA 66.67 86.96 70.00 73.08 72.00 63.33 66.67 77.78 68.29 68.42 63.64 95.65 66.67 71.43 72.00 90.00 73.33 54.84 57.45 50.00 62.50 71.43 51.85 75.00 NA 85.00 50.00 54.55 52.00 82.61 50.00 61.29 74.19 66.67 73.91 77.78 69.23 80.95 64.29 75.00 K jcn_only_AD rdgBbeta,I_chr2R_13584056_13584177,CRE_chr2R_13584378_13585329 chr2R - chr2R_13584056_13584177 chr2R_13584056_13584116 chr2R_13583956_13584055;chr2R_13584178_13584246 100.00 NA 95.00 96.77 NA NA NA 96.77 97.73 NA NA 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 NA NA 95.24 NA NA NA NA NA NA NA 100.00 100.00 NA 90.91 NA NA NA NA NA 95.45 NA 100.00 NA NA NA 100.00 NA 100.00 94.74 NA NA NA NA NA 100.00 NA NA 100.00 K intron_retention pes chr2L - chr2L_7991620_7994109 chr2L_7991619_7991620;chr2L_7994109_7994110 chr2L_7991358_7991619;chr2L_7994110_7994285 88.24 85.71 84.62 71.43 76.32 87.10 91.25 85.19 86.92 88.24 92.31 80.74 90.48 83.93 85.71 86.81 78.72 83.54 82.46 88.89 89.47 91.76 92.00 92.31 89.16 91.30 80.00 72.09 79.41 86.21 87.88 82.61 75.00 89.19 86.49 97.30 83.87 90.16 82.26 81.58 92.86 82.05 89.36 90.91 77.78 90.00 93.44 89.47 93.12 90.48 88.89 91.67 97.14 88.89 84.71 94.64 91.84 92.31 K jcn_only_AD ced-6,I_chr2R_5324717_5324924,I_chr2R_5328640_5328696 chr2R - chr2R_5325238_5328696;chr2R_5325238_5329011 chr2R_5325238_5329037 chr2R_5324931_5325237;chr2R_5329038_5329082 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.89 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 K alternative_donor vkg,I_chr2L_5027222_5027297,I_chr2L_5027222_5028118 chr2L - chr2L_5027222_5027297;chr2L_5027222_5027351 chr2L_5027222_5028118 chr2L_5027122_5027221;chr2L_5028119_5028218 1.54 0.00 0.00 3.33 9.09 0.00 3.85 2.56 1.61 0.00 0.00 2.44 2.13 0.00 3.03 2.27 0.00 0.00 10.00 5.63 6.67 8.33 0.00 0.00 0.00 14.29 4.76 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 5.88 0.00 5.00 16.67 10.00 14.29 5.00 1.54 7.69 7.69 0.00 7.14 0.00 2.38 0.00 0.00 5.00 K alternative_donor Fis1,I_chr2R_1491917_1491981,I_chr2R_1491917_1492087,I_chr2R_1492154_1492214 chr2R - chr2R_1492022_1492093 chr2R_1492022_1492087 chr2R_1491982_1492021;chr2R_1492094_1492153 100.00 100.00 100.00 98.82 100.00 96.97 96.12 98.91 98.52 100.00 97.06 100.00 98.31 100.00 100.00 99.07 100.00 100.00 98.39 100.00 100.00 100.00 100.00 97.87 100.00 100.00 97.67 100.00 100.00 100.00 100.00 97.06 100.00 98.97 96.97 100.00 100.00 96.97 100.00 100.00 100.00 98.98 100.00 97.30 93.75 98.15 97.92 100.00 100.00 100.00 97.62 100.00 97.14 100.00 100.00 100.00 98.51 97.44 K intron_retention CG31619,I_chr2L_21725446_21728027 chr2L + chr2L_21725446_21728027 chr2L_21725445_21725446;chr2L_21728027_21728028 chr2L_21725346_21725445;chr2L_21728028_21728127 22.65 NA NA 44.44 NA NA NA 46.15 41.18 NA NA 22.22 NA NA NA 35.71 NA NA NA 20.00 NA NA NA NA NA 30.77 NA NA NA NA 30.77 NA NA 22.22 NA NA 14.29 NA 17.65 NA NA 36.84 NA NA NA NA NA 20.00 21.05 NA NA NA NA NA NA 23.08 NA 0.00 K jcn_only_AD CG8920 chr2R + chr2R_16208192_16209182 chr2R_16208194_16209182 chr2R_16209183_16209405;chr2R_16208123_16208191 100.00 100.00 98.08 97.78 100.00 100.00 100.00 100.00 98.99 100.00 100.00 98.57 100.00 95.83 100.00 97.96 100.00 100.00 100.00 100.00 100.00 98.33 100.00 98.11 97.96 100.00 98.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.48 96.67 100.00 97.06 100.00 100.00 100.00 95.56 96.72 98.53 96.97 98.75 100.00 NA 96.00 100.00 100.00 100.00 100.00 K intron_retention faf,RI_chr3R_27603474_27603893,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27610489_27610553 chr3R_27610488_27610489;chr3R_27610553_27610554 chr3R_27610065_27610488;chr3R_27610554_27610869 0.00 1.64 2.78 3.19 0.00 1.72 0.99 2.50 3.73 0.00 0.00 1.44 0.00 5.88 2.67 2.53 2.99 1.37 0.00 1.69 0.00 1.54 3.51 2.35 0.00 0.00 2.50 0.00 0.00 1.72 0.00 0.00 0.00 1.67 2.33 0.00 1.61 0.00 0.00 3.49 NA 2.48 0.00 0.00 0.00 0.00 0.00 0.00 3.48 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive CG5191,E_chr3R_16391739_16398166,CG5412 chr3R + chr3R_16387134_16396323,chr3R_16396372_16396811 chr3R_16387134_16391529,chr3R_16392332_16396811 chr3R_16396324_16396371 chr3R_16391530_16392331 chr3R_16387079_16387133;chr3R_16396812_16398636 16.67 NA 25.00 20.00 NA 0.00 16.67 16.67 16.67 NA 12.50 12.50 NA NA 20.00 14.29 NA 20.00 NA 0.00 NA NA NA NA NA NA 20.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 20.00 20.00 NA NA NA NA NA NA 0.00 NA 20.00 25.00 NA 25.00 NA NA NA 14.29 K intron_retention CG13185 chr2R - chr2R_7758837_7758911 chr2R_7758836_7758837;chr2R_7758911_7758912 chr2R_7757514_7758836;chr2R_7758912_7759448 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 94.12 98.36 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette bif,I_chrX_11581793_11583233,REI_chrX_11585551_11586831 chrX + chrX_11583577_11587579 chrX_11583577_11586831;chrX_11587211_11587579 chrX_11586832_11587210 chrX_11583234_11583576;chrX_11587580_11588761 9.47 12.68 8.54 13.73 8.96 7.78 21.33 17.20 12.82 7.45 7.58 8.39 53.73 17.46 9.47 16.44 19.30 4.71 15.62 7.77 7.46 5.42 18.56 12.79 8.57 8.43 8.86 11.54 2.82 5.08 11.11 7.10 5.17 13.27 8.25 4.90 8.28 11.54 5.76 11.05 6.29 10.12 15.62 14.10 2.71 11.06 11.11 7.04 13.61 8.51 16.28 15.79 8.75 15.09 8.54 12.24 10.75 5.98 K intron_retention CG7358 chrX - chrX_18783907_18784099 chrX_18783906_18783907;chrX_18784099_18784100 chrX_18783124_18783906;chrX_18784100_18784481 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.88 0.00 0.00 0.00 2.02 0.00 0.00 0.00 1.11 0.00 1.90 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.92 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 2.06 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 1.03 K alternative_donor miple2,I_chr3L_271508_273549,I_chr3L_271695_273549,I_chr3L_271922_273549,I_chr3L_274251_274594 chr3L + chr3L_271792_273549;chr3L_271217_273549;chr3L_271695_273549 chr3L_273391_273549 chr3L_273550_273649;chr3L_271209_271216 8.00 0.00 0.00 8.00 12.50 10.00 10.00 6.25 6.67 14.29 25.00 5.26 0.00 0.00 11.11 9.09 0.00 20.00 7.69 5.00 33.33 10.00 5.88 6.25 8.33 0.00 13.33 16.67 20.00 12.50 8.33 14.29 22.22 5.56 10.00 16.67 9.09 9.09 6.25 7.14 8.33 5.56 0.00 6.25 12.50 9.09 5.56 25.00 4.55 7.41 6.67 6.67 0.00 11.11 6.25 6.67 6.25 11.11 K intron_retention I_chr2R_19922148_19922210,sei,I_chr2R_19935072_19935138,I_chr2R_19939693_19939776,I_chr2R_19946657_19946733,I_chr2R_19948517_19948682 chr2R + chr2R_19935072_19935138 chr2R_19935071_19935072;chr2R_19935138_19935139 chr2R_19935064_19935071;chr2R_19935139_19935238 100.00 100.00 100.00 98.84 96.88 98.15 99.07 99.05 99.08 100.00 100.00 100.00 100.00 100.00 100.00 98.92 97.73 98.04 98.33 99.38 97.73 97.44 100.00 97.65 100.00 98.46 100.00 100.00 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.82 100.00 99.14 97.87 100.00 98.57 100.00 98.98 100.00 100.00 98.98 98.99 100.00 98.51 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Hr39,I_chr2L_21256047_21256260 chr2L + chr2L_21237347_21238280;chr2L_21237385_21238280;chr2L_21237421_21238280;chr2L_21237364_21238280;chr2L_21237405_21238280 chr2L_21237397_21238280 chr2L_21238281_21238529;chr2L_21237247_21237346 0.00 NA NA 2.86 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K intron_retention KrT95D,I_chr3R_19825840_19825904 chr3R - chr3R_19824669_19824728 chr3R_19824668_19824669;chr3R_19824728_19824729 chr3R_19824552_19824668;chr3R_19824729_19825284 0.76 0.00 0.88 1.98 0.00 0.00 0.00 1.97 0.44 2.27 0.00 0.63 0.00 0.00 2.54 1.29 0.00 0.81 0.00 0.48 0.00 1.98 0.59 1.38 0.00 1.27 2.55 5.37 3.08 0.00 1.20 0.76 1.40 1.86 0.00 0.96 1.18 0.00 0.58 0.00 1.14 0.75 0.00 1.02 1.30 0.85 0.83 0.00 2.00 1.48 0.68 0.00 0.00 1.14 0.00 0.00 2.16 1.22 K intron_retention Top3beta chrX - chrX_6179401_6179464 chrX_6179400_6179401;chrX_6179464_6179465 chrX_6179007_6179400;chrX_6179465_6180515 1.27 2.70 0.00 1.67 2.00 3.33 4.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 7.84 1.55 0.00 16.13 2.31 3.48 1.41 0.00 3.70 6.94 1.27 0.00 2.38 0.00 0.00 4.05 0.00 0.00 3.17 0.00 1.34 3.36 1.47 0.00 0.00 2.11 0.00 0.00 0.00 1.39 2.06 2.73 2.59 1.96 0.00 0.80 3.17 2.00 0.00 0.00 K intron_retention Msp-300,I_chr2L_5154189_5154247,I_chr2L_5174808_5176751,I_chr2L_5185965_5188116,snoRNA:Psi28S-2263,I_chr2L_5197634_5197866 chr2L + chr2L_5155850_5158454 chr2L_5155849_5155850;chr2L_5158454_5158455 chr2L_5155589_5155849;chr2L_5158455_5158504 0.00 NA 5.56 5.26 0.00 NA NA 0.00 3.57 NA NA 0.00 NA 0.00 0.00 5.26 NA NA NA 8.70 NA 7.69 0.00 NA NA NA NA NA NA 12.50 NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K cassette Liprin-alpha chr2L + chr2L_6726719_6727862 chr2L_6726719_6727193;chr2L_6727323_6727862 chr2L_6727194_6727322 chr2L_6726599_6726718;chr2L_6727863_6728780 97.83 97.06 97.30 100.00 96.77 100.00 100.00 100.00 97.83 100.00 96.88 98.63 77.78 94.29 97.83 100.00 96.88 96.88 97.37 98.53 94.29 98.41 98.31 97.73 96.55 90.48 100.00 100.00 95.00 97.96 97.83 100.00 98.46 98.21 100.00 93.02 100.00 100.00 96.23 100.00 96.67 98.89 100.00 97.73 100.00 100.00 100.00 100.00 97.14 95.00 94.00 96.77 93.75 100.00 98.04 96.15 95.45 97.62 K intron_retention pnr,RI_chr3R_11852561_11855192 chr3R + chr3R_11864930_11864991 chr3R_11864929_11864930;chr3R_11864991_11864992 chr3R_11864309_11864929;chr3R_11864992_11865268 1.38 2.17 2.08 1.36 1.10 1.29 2.43 1.77 1.13 0.89 1.01 0.81 1.44 1.52 2.28 2.31 1.67 0.78 1.26 0.60 1.04 1.43 1.49 1.55 2.38 1.28 5.00 9.66 1.91 1.44 0.00 0.00 0.58 1.56 1.38 2.58 1.51 1.31 1.34 1.35 2.02 0.97 1.52 1.32 0.91 1.99 0.80 0.97 1.27 2.17 1.09 2.61 0.43 0.94 1.57 2.11 1.45 0.80 K intron_retention CG3689 chr3L + chr3L_9406418_9406490 chr3L_9406417_9406418;chr3L_9406490_9406491 chr3L_9406303_9406417;chr3L_9406491_9406775 1.61 3.45 0.00 1.94 0.00 0.00 4.00 1.12 2.61 0.00 0.00 2.08 0.00 0.00 3.85 3.03 3.92 3.53 2.90 2.72 0.00 0.00 2.38 1.61 0.00 5.00 6.19 8.06 0.00 0.00 1.27 2.00 0.00 5.38 2.90 0.00 1.42 0.00 0.00 0.85 0.00 1.65 0.00 2.70 7.02 4.44 0.86 0.00 3.39 2.76 2.56 2.25 0.00 0.00 0.00 2.22 1.71 0.00 K alternative_acceptor Sh3beta,I_chr3L_7358062_7358169,RI_chr3L_7358065_7358169,I_chr3L_7361085_7361784 chr3L - chr3L_7358062_7358169 chr3L_7358065_7358169 chr3L_7358170_7358269;chr3L_7357965_7358061 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor Gs1l,I_chr2L_4456517_4456723,I_chr2L_4458058_4458120 chr2L - chr2L_4456521_4456725;chr2L_4456521_4456719 chr2L_4456521_4456723 chr2L_4456386_4456520;chr2L_4456726_4456801 50.00 62.50 55.56 50.00 60.00 55.56 70.00 70.59 51.35 NA 53.33 63.16 58.33 50.00 57.14 46.67 58.33 53.33 44.44 46.88 60.00 NA 22.22 37.50 42.86 50.00 20.00 NA 50.00 NA 73.68 55.56 31.25 48.00 NA 40.00 33.33 NA 30.77 31.58 23.53 64.00 50.00 37.50 44.44 35.29 NA 26.67 61.11 NA NA 50.00 NA 30.00 61.54 35.71 30.77 31.25 K alternative_acceptor CG17271,I_chr3R_16645217_16645392,RI_chr3R_16647104_16647149 chr3R - chr3R_16647089_16647149 chr3R_16647104_16647149 chr3R_16647150_16647218;chr3R_16647021_16647088 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.76 0.00 0.62 0.00 0.00 0.72 0.00 0.00 0.69 0.00 0.95 0.00 0.00 0.00 0.00 0.88 0.00 0.66 0.75 1.74 0.61 0.00 0.00 0.69 0.00 0.00 0.00 0.35 0.00 0.83 0.43 0.00 0.52 0.00 0.00 1.06 0.00 0.52 0.72 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.53 K intron_retention I_chr3L_20306985_20307177,CG6680 chr3L + chr3L_20312242_20312297 chr3L_20312241_20312242;chr3L_20312297_20312298 chr3L_20311971_20312241;chr3L_20312298_20312666 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31694,E_chr2L_2869392_2871250,Prx6005 chr2L - chr2L_2869255_2869322 chr2L_2869254_2869255;chr2L_2869322_2869323 chr2L_2868542_2869254;chr2L_2869323_2869391 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention DCAP,RI_chr2R_6183553_6192101,I_chr2R_6188094_6192101 chr2R + chr2R_6188094_6192128 chr2R_6188093_6188094;chr2R_6192128_6192129 chr2R_6188087_6188093;chr2R_6192129_6192201 22.22 25.00 NA NA NA NA 46.15 26.32 25.93 NA NA 17.65 NA NA 26.67 20.00 NA NA 12.50 26.32 NA 45.45 28.57 NA NA NA 60.00 NA 14.29 NA 16.67 NA 18.75 16.67 NA NA 12.50 NA NA 19.05 NA 30.00 25.00 NA NA 25.00 13.33 22.22 30.00 NA NA NA 22.22 20.00 NA NA 14.29 11.43 K alternative_acceptor CG42550 chr3R - chr3R_3826590_3826647 chr3R_3826595_3826647 chr3R_3826648_3826710;chr3R_3826527_3826589 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 97.06 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 K intron_retention CG5522 chr2R + chr2R_12671388_12672274 chr2R_12671387_12671388;chr2R_12672274_12672275 chr2R_12671319_12671387;chr2R_12672275_12672413 50.00 NA NA NA NA NA 66.67 NA 37.50 NA NA 50.00 NA NA NA NA NA NA 38.46 37.50 NA NA NA NA NA 54.55 64.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA K intron_retention CG31523,I_chr3R_294322_294479,RI_chr3R_294322_296218,I_chr3R_294322_297157,I_chr3R_294322_298014,I_chr3R_294322_300973,RI_chr3R_294322_300982,I_chr3R_294322_304799,RI_chr3R_298911_304354 chr3R - chr3R_294322_304354 chr3R_294321_294322;chr3R_304354_304355 chr3R_294222_294321;chr3R_304355_304454 0.00 0.00 2.38 3.77 0.00 NA 0.00 4.35 3.85 0.00 0.00 0.00 9.09 0.00 2.70 2.94 0.00 0.00 0.00 1.83 4.76 7.32 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 2.38 0.00 0.00 5.66 0.00 0.00 0.00 0.00 5.13 0.00 0.00 1.59 0.00 0.00 0.00 0.00 8.70 2.11 0.00 NA 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 K jcn_only_AD CG11148,I_chr4_886499_886547,RI_chr4_886921_887162 chr4 - chr4_886478_886556 chr4_886478_886547 chr4_886399_886477;chr4_886557_886647 2.27 NA NA NA NA NA NA NA 0.00 NA NA 5.00 NA NA NA NA NA NA NA NA NA NA 4.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention srp,I_chr3R_11826508_11826910 chr3R + chr3R_11825496_11825567 chr3R_11825495_11825496;chr3R_11825567_11825568 chr3R_11825048_11825495;chr3R_11825568_11825781 0.93 1.57 0.00 1.00 1.83 0.00 1.75 1.14 0.00 1.19 0.00 1.46 1.98 0.00 1.32 0.85 0.00 0.00 0.00 0.92 0.00 3.52 0.93 1.48 0.98 1.67 2.41 7.77 7.61 2.33 0.72 0.00 2.11 1.49 0.00 0.00 2.86 1.64 0.93 1.38 2.82 1.46 0.00 0.00 3.09 0.62 0.79 3.50 0.00 0.00 0.61 0.00 1.26 0.00 0.00 0.85 0.00 2.10 K intron_retention CREF_chr3R_5589662_5589762,topi,RpS29 chr3R + chr3R_5601376_5601434 chr3R_5601375_5601376;chr3R_5601434_5601435 chr3R_5600742_5601375;chr3R_5601435_5601466 10.84 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA K alternative_donor Kdm4A chr2R - chr2R_3811118_3811191 chr2R_3811118_3811173 chr2R_3810414_3811117;chr2R_3811192_3812037 100.00 NA NA 90.00 NA NA NA 87.50 91.67 NA NA 92.86 NA NA 100.00 NA NA 87.50 NA 90.91 NA 100.00 100.00 NA NA NA 100.00 NA 100.00 NA NA NA 100.00 100.00 100.00 NA 88.89 100.00 NA 100.00 NA 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA 88.89 NA NA NA NA 100.00 K intron_retention CG6191 chr2R - chr2R_9470453_9470511 chr2R_9470452_9470453;chr2R_9470511_9470512 chr2R_9470304_9470452;chr2R_9470512_9470638 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 4.17 7.69 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG5284,I_chr3L_16086347_16086804 chr3L + chr3L_16086347_16086804 chr3L_16086749_16086804 chr3L_16086805_16086904;chr3L_16086247_16086346 100.00 100.00 100.00 100.00 100.00 99.15 100.00 100.00 100.00 100.00 99.07 99.54 100.00 99.14 100.00 100.00 99.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.25 99.26 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.60 100.00 98.97 100.00 100.00 100.00 100.00 100.00 100.00 99.31 100.00 100.00 100.00 100.00 100.00 100.00 98.81 K intron_retention TBPH,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748039_19748093 chr2R_19748038_19748039;chr2R_19748093_19748094 chr2R_19747880_19748038;chr2R_19748094_19748298 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG8184,I_chrX_15620707_15620769 chrX + chrX_15617158_15617265;chrX_15617191_15617265 chrX_15617113_15617265 chrX_15617266_15618411;chrX_15615597_15617112 3.45 0.00 14.81 2.44 13.04 3.70 2.78 0.00 1.45 2.44 5.00 0.00 0.00 7.41 3.33 3.45 4.76 5.26 0.00 1.03 3.85 3.31 2.82 4.08 3.12 5.26 4.55 3.45 4.35 1.39 4.00 3.33 4.00 1.75 2.13 2.70 1.28 0.00 1.59 5.00 3.85 5.19 4.76 4.41 0.00 4.44 5.00 0.85 6.00 0.00 2.27 3.70 7.69 0.00 3.45 5.00 0.00 5.08 K cassette CG16833,I_chr2L_10994022_10994325,I_chr2L_10994919_10997334 chr2L + chr2L_10989875_10991058;chr2L_10989871_10991058 chr2L_10989871_10990095,chr2L_10989875_10990095;chr2L_10990784_10991058 chr2L_10990096_10990783 chr2L_10989656_10989870;chr2L_10991059_10991885 41.67 41.18 32.43 33.33 45.00 34.62 43.59 20.00 39.71 56.00 39.13 32.26 41.67 40.74 39.39 46.15 38.10 67.74 29.03 37.10 37.93 90.57 58.70 60.71 37.04 34.62 50.00 54.84 54.55 58.33 38.24 61.11 56.00 31.48 55.00 58.33 47.92 38.89 53.66 40.62 47.37 30.99 42.11 42.11 56.67 35.48 44.00 43.75 29.23 48.00 43.48 56.25 37.14 36.84 30.56 37.04 46.15 34.78 N cassette CG9796 chr3R - chr3R_9224691_9225231 chr3R_9224691_9224794;chr3R_9225155_9225231 chr3R_9224795_9225154 chr3R_9224562_9224690;chr3R_9225232_9225366 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette noncoding_7598 chr2R + chr2R_13586674_13587362 chr2R_13586674_13586855;chr2R_13586950_13587362 chr2R_13586856_13586949 chr2R_13586657_13586673;chr2R_13587363_13587402 100.00 100.00 100.00 92.86 NA 87.50 100.00 90.48 94.44 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 94.12 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 87.50 100.00 NA 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Su(var)2-10,I_chr2R_5005955_5006020,RI_chr2R_5006333_5006392 chr2R + chr2R_5005955_5006010 chr2R_5005954_5005955;chr2R_5006010_5006011 chr2R_5005855_5005954;chr2R_5006011_5006177 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor exba,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1425813_1426125;chr3R_1425813_1426209 chr3R_1425813_1426009 chr3R_1425790_1425812;chr3R_1426210_1426225 50.00 NA 50.00 NA NA NA 58.82 50.00 50.00 33.33 66.67 56.52 62.50 69.23 NA 50.00 NA 60.00 73.33 45.83 57.14 28.57 64.29 38.46 NA 62.50 NA 42.86 45.45 50.00 43.75 46.15 46.15 51.72 66.67 57.14 83.33 50.00 NA 42.11 NA 45.83 50.00 60.00 30.00 47.62 33.33 41.67 56.67 54.55 NA 60.00 60.00 NA NA 37.50 NA 36.36 N multi_cassette RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817,snoRNA:Psi28S-2444 chr2R + chr2R_15330246_15330817 chr2R_15330246_15330305;chr2R_15330604_15330664;chr2R_15330745_15330817 chr2R_15330306_15330603;chr2R_15330665_15330744 chr2R_15330177_15330245;chr2R_15330818_15330917 100.00 100.00 NA 30.00 100.00 45.45 100.00 53.33 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 55.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 50.00 52.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG17082,I_chr2R_632143_635290,R_chr2R_642176_644740,I_chr2R_644094_644145,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_632143_636726 chr2R_632143_632274 chr2R_632135_632142 11.52 NA NA 8.57 NA NA 19.23 4.17 9.52 NA NA NA NA NA NA 19.23 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.04 NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA K intron_retention CG11710 chrX - chrX_20299022_20299090 chrX_20299021_20299022;chrX_20299090_20299091 chrX_20298827_20299021;chrX_20299091_20299199 38.46 41.67 NA 60.00 NA NA 33.33 25.00 37.50 33.33 NA 42.11 NA NA NA 45.45 NA NA 38.46 47.06 40.00 43.75 30.00 46.15 26.67 NA 45.00 45.00 34.62 NA 22.22 NA 58.33 NA NA 38.46 40.00 35.71 38.89 33.33 33.33 31.25 50.00 46.67 33.33 37.50 41.67 25.00 27.27 50.00 38.89 NA NA 33.33 41.67 35.71 23.08 33.33 K intron_retention CG6656,CG33092 chr3R + chr3R_17702411_17702482 chr3R_17702410_17702411;chr3R_17702482_17702483 chr3R_17702297_17702410;chr3R_17702483_17702615 1.83 0.00 0.00 0.00 0.00 2.56 4.88 1.03 0.00 NA 0.00 4.84 0.00 0.00 0.00 3.28 0.00 0.00 6.90 3.55 0.00 1.92 5.45 0.00 0.00 0.00 13.79 10.53 0.00 0.00 6.45 5.13 3.39 2.22 3.45 22.22 2.38 0.00 4.35 6.45 5.88 1.08 0.00 4.08 5.71 1.75 2.00 6.15 2.13 2.50 0.00 0.00 0.00 3.85 0.00 0.00 1.15 3.12 K jcn_only_AD CG3368,Hmu chr3R + chr3R_23109531_23109679 chr3R_23109627_23109679 chr3R_23109680_23111749;chr3R_23109485_23109530 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 97.78 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 98.86 98.99 100.00 99.45 100.00 98.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 100.00 100.00 K alternative_donor CG34413,RI_chr2R_20769295_20770153,I_chr2R_20771136_20772048,I_chr2R_20773500_20774745 chr2R + chr2R_20769471_20770153;chr2R_20769150_20770153;chr2R_20769206_20770153 chr2R_20769295_20770153 chr2R_20770154_20770253;chr2R_20769141_20769149 2.17 1.59 1.47 1.19 0.00 0.00 1.27 2.56 2.07 2.17 0.00 1.10 0.00 2.99 2.35 3.77 1.23 3.12 1.59 2.00 1.59 5.36 3.51 2.41 7.27 1.45 1.56 7.50 11.54 6.45 2.53 8.33 2.86 2.94 0.00 4.35 0.89 3.33 3.85 2.65 0.00 2.34 1.75 2.08 3.70 4.35 3.70 6.45 1.37 2.22 0.00 0.00 2.56 0.00 0.00 2.70 0.00 0.00 K intron_retention S6k,I_chr3L_5800361_5803389,RI_chr3L_5801924_5803389 chr3L - chr3L_5801089_5803389 chr3L_5801088_5801089;chr3L_5803389_5803390 chr3L_5801048_5801088;chr3L_5803390_5803489 5.93 5.93 3.35 11.24 5.33 3.59 7.43 5.93 4.19 4.35 5.38 15.75 6.96 5.03 5.79 3.11 4.38 9.02 7.14 5.36 8.84 13.10 4.27 5.65 10.17 4.51 10.00 13.93 12.50 5.06 6.93 8.82 11.94 6.25 7.00 11.43 3.44 1.13 5.82 5.32 11.00 4.52 3.17 4.46 14.07 8.40 7.37 8.00 3.46 9.30 6.52 5.49 3.19 7.55 4.04 5.38 2.86 6.21 K alternative_donor dlg1,I_chrX_11298230_11299306 chrX + chrX_11290137_11291857 chrX_11290605_11291857 chrX_11291858_11291945;chrX_11290037_11290136 99.41 98.98 99.06 99.62 97.75 94.97 99.52 96.85 99.54 100.00 99.32 99.41 99.23 99.36 99.51 99.05 95.24 97.16 99.41 98.17 99.34 99.57 99.47 99.63 99.57 100.00 100.00 98.77 100.00 99.68 99.43 100.00 99.59 99.66 99.51 100.00 99.34 99.01 99.20 98.97 100.00 99.29 100.00 99.26 99.36 100.00 100.00 99.71 98.86 100.00 99.28 99.42 100.00 99.04 98.53 99.29 99.31 100.00 K alternative_donor pit,RI_chr3R_17861471_17861539 chr3R + chr3R_17860175_17861539 chr3R_17861471_17861539 chr3R_17861540_17861639;chr3R_17860169_17860174 100.00 100.00 100.00 96.00 95.83 100.00 100.00 98.00 100.00 100.00 100.00 100.00 96.43 96.43 100.00 100.00 100.00 96.00 100.00 98.53 96.15 100.00 97.50 100.00 100.00 96.43 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor Hr39,I_chr2L_21256047_21256260 chr2L + chr2L_21237347_21238280;chr2L_21237385_21238280;chr2L_21237421_21238280;chr2L_21237364_21238280;chr2L_21237405_21238280 chr2L_21237397_21238280 chr2L_21238281_21238529;chr2L_21237247_21237346 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 9.09 0.00 2.63 10.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 NA 9.09 0.00 0.00 9.09 NA 0.00 7.14 3.33 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K alternative_donor CaMKII,I_chr4_1069766_1069812,I_chr4_1071236_1071307,RI_chr4_1071236_1071315,I_chr4_1071489_1071884,RI_chr4_1071489_1071968,I_chr4_1071569_1071884,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1071236_1071968;chr4_1071236_1071813;chr4_1071236_1072054;chr4_1071236_1071319 chr4_1071236_1071884 chr4_1071136_1071235;chr4_1072055_1072059 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chrX_788339_821889,CG3711 chrX - chrX_818951_819005 chrX_818950_818951;chrX_819005_819006 chrX_818772_818950;chrX_819006_819181 0.00 0.00 0.00 29.41 NA NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 NA NA 6.67 NA NA NA NA NA NA 0.00 NA 5.26 NA NA NA 0.00 NA NA NA N alternative_donor CG32529 chrX + chrX_19795641_19795900;chrX_19795687_19795900 chrX_19795522_19795900 chrX_19795901_19798251;chrX_19794649_19795521 97.83 96.91 98.90 96.41 98.80 97.39 96.19 97.52 98.40 99.46 95.96 98.56 96.89 97.45 96.93 96.59 98.44 98.99 98.54 98.15 97.16 76.06 97.78 98.01 98.82 98.75 97.07 97.03 95.68 97.01 97.89 97.73 97.70 98.67 97.50 97.16 98.64 98.39 98.49 98.92 96.39 98.09 98.37 99.05 98.28 97.30 97.27 96.69 98.17 97.66 97.93 99.36 100.00 97.50 97.83 97.74 98.04 100.00 K jcn_only_AD CG8949,I_chrX_16966573_16966630,I_chrX_16971501_16971713 chrX - chrX_16966573_16966681 chrX_16966573_16966630 chrX_16966487_16966572;chrX_16966682_16966730 3.45 8.00 0.00 0.00 7.41 0.00 7.14 1.16 5.80 NA 3.70 2.90 4.76 3.45 3.77 2.04 2.86 2.86 4.44 1.43 0.00 11.36 4.65 3.45 4.76 8.82 9.76 4.00 15.38 6.67 11.11 8.00 7.81 1.61 6.45 0.00 2.13 0.00 5.26 1.25 6.67 1.05 2.94 3.03 3.45 2.70 3.70 7.55 0.00 NA 0.00 4.17 NA NA 1.72 NA 0.00 0.00 K jcn_only_AA Vha26,I_chr3R_1417553_1417709,I_chr3R_1417761_1418260,I_chr3R_1417761_1418275,I_chr3R_1418045_1418289 chr3R + chr3R_1417761_1418289 chr3R_1417761_1418275 chr3R_1417710_1417760;chr3R_1418290_1418360 0.18 0.30 0.20 0.26 0.42 0.27 0.18 0.23 0.12 0.00 0.00 0.12 0.00 0.00 0.00 0.13 0.34 0.00 0.21 0.18 0.26 0.00 0.21 0.00 0.41 0.00 0.27 0.34 0.40 0.36 0.49 0.00 0.00 0.12 0.29 0.00 0.36 0.00 0.30 0.00 1.41 0.13 0.00 0.27 0.39 0.00 0.31 0.31 0.22 0.79 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.30 K cassette kis,I_chr2L_228282_230537,RI_chr2L_231035_231947,RI_chr2L_242745_242800,I_chr2L_242926_250756 chr2L - chr2L_228282_230537 chr2L_228282_229172;chr2L_229383_230537 chr2L_229173_229382 chr2L_228182_228281;chr2L_230538_230627 89.31 90.67 86.08 63.78 90.14 88.46 86.00 88.99 92.08 92.86 62.50 89.35 95.38 89.16 89.66 84.16 83.58 92.86 86.11 89.31 80.00 90.98 92.86 90.62 86.05 70.67 79.59 91.14 76.83 84.00 91.89 85.19 91.74 91.04 94.67 90.24 92.00 98.33 90.35 89.51 80.00 90.29 85.94 87.16 93.55 91.89 88.57 89.00 89.78 90.00 86.79 98.00 84.78 84.00 85.71 95.00 80.77 86.54 K alternative_donor Rip11,E_chrX_18532733_18533695,RI_chrX_18530353_18530870,RI_chrX_18544139_18544185 chrX - chrX_18531820_18533496 chrX_18531820_18532278 chrX_18531668_18531819;chrX_18533497_18534230 76.04 76.60 76.23 81.04 77.75 77.56 75.15 77.67 74.55 74.51 76.20 74.68 72.01 77.59 74.24 82.08 69.09 73.55 71.72 77.54 73.76 84.77 82.15 80.17 75.44 74.68 78.73 80.52 70.99 77.13 77.45 73.11 76.63 75.91 77.52 76.38 77.16 81.04 76.00 72.93 76.04 75.54 74.14 71.58 73.05 71.79 81.22 72.45 74.32 83.51 80.36 78.50 72.41 79.88 73.54 79.08 73.74 66.67 K alternative_acceptor CG3609,I_chr2L_2372744_2372829,RI_chr2L_2373723_2374295 chr2L - chr2L_2372744_2372829 chr2L_2372771_2372829 chr2L_2372830_2372898;chr2L_2372644_2372743 99.32 99.19 98.68 100.00 99.00 98.75 98.92 99.06 100.00 98.68 98.55 99.29 100.00 98.44 100.00 100.00 98.53 98.46 100.00 99.38 100.00 100.00 100.00 99.22 98.65 100.00 99.18 99.29 100.00 100.00 100.00 98.65 98.94 99.00 100.00 100.00 100.00 99.17 99.49 99.21 100.00 99.34 100.00 100.00 96.88 100.00 99.15 98.08 100.00 99.34 100.00 98.39 100.00 100.00 98.78 99.29 99.32 98.08 K intron_retention CG34424 chr2R + chr2R_19247449_19247512 chr2R_19247448_19247449;chr2R_19247512_19247513 chr2R_19247193_19247448;chr2R_19247513_19247796 6.67 3.45 0.00 17.65 0.00 10.53 8.00 0.00 12.50 7.41 NA 0.00 0.00 NA 0.00 20.00 NA 0.00 NA 0.00 0.00 33.33 16.00 15.38 6.67 14.29 7.41 20.51 31.82 8.33 4.88 10.71 22.73 5.88 NA 9.09 3.08 0.00 7.55 5.00 14.29 6.25 NA 3.33 8.33 3.45 6.67 9.09 4.35 16.67 3.57 10.00 NA 0.00 0.00 4.76 0.00 6.67 K alternative_acceptor CG12895 chr2R - chr2R_6324756_6324824 chr2R_6324769_6324824 chr2R_6324825_6324905;chr2R_6324587_6324755 100.00 NA 90.91 92.86 90.91 90.00 100.00 100.00 95.45 NA 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 90.00 95.83 NA 100.00 87.50 100.00 NA 90.91 NA 100.00 100.00 NA 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 NA 87.50 100.00 100.00 NA 100.00 94.44 100.00 NA NA 100.00 NA 92.86 NA 100.00 100.00 K intron_retention AP-47,I_chr3R_5385123_5385196 chr3R - chr3R_5385134_5385196 chr3R_5385133_5385134;chr3R_5385196_5385197 chr3R_5384913_5385133;chr3R_5385197_5385206 100.00 100.00 98.04 100.00 97.87 100.00 100.00 98.91 99.18 100.00 100.00 100.00 98.00 100.00 98.28 100.00 100.00 100.00 100.00 99.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 98.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 99.01 100.00 100.00 98.04 100.00 100.00 100.00 98.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.00 100.00 K intron_retention RpL37a chrX - chrX_15032947_15033011 chrX_15032946_15032947;chrX_15033011_15033012 chrX_15032022_15032946;chrX_15033012_15033147 0.04 0.02 0.07 0.04 0.02 0.07 0.06 0.04 0.07 0.04 0.07 0.05 0.03 0.06 0.02 0.00 0.08 0.00 0.06 0.07 0.03 0.65 0.05 0.02 0.07 0.27 0.10 0.19 0.84 0.02 0.06 0.08 0.00 0.07 0.02 0.06 0.03 0.00 0.04 0.04 0.22 0.02 0.00 0.02 0.00 0.09 0.03 0.09 0.04 0.04 0.07 0.02 0.06 0.00 0.04 0.03 0.04 0.11 K intron_retention CG9338,CG31675 chr2L + chr2L_20865354_20865411 chr2L_20865353_20865354;chr2L_20865411_20865412 chr2L_20865228_20865353;chr2L_20865412_20865585 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.82 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.82 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 K intron_retention CG6543,I_chr2R_9741721_9741802 chr2R - chr2R_9741411_9741606 chr2R_9741410_9741411;chr2R_9741606_9741607 chr2R_9740686_9741410;chr2R_9741607_9741729 0.93 1.76 0.00 1.53 3.61 0.84 3.61 0.93 0.66 0.80 0.00 1.35 1.59 1.26 1.88 0.00 0.00 0.47 0.00 0.75 0.00 1.43 1.46 1.46 0.40 0.90 1.52 2.88 0.57 1.09 0.97 0.58 0.31 0.82 0.38 0.30 1.45 0.85 1.27 0.50 1.44 1.23 1.27 2.08 0.00 0.74 1.23 1.23 1.22 0.00 0.29 1.16 1.33 0.81 1.19 1.23 0.00 0.79 K intron_retention CG6912 chr3R - chr3R_10961101_10961220 chr3R_10961100_10961101;chr3R_10961220_10961221 chr3R_10960829_10961100;chr3R_10961221_10962114 2.82 0.00 3.45 3.23 4.84 6.06 2.82 6.10 4.41 0.00 5.00 0.88 2.02 3.12 2.35 1.92 1.72 1.96 3.85 2.25 3.08 4.29 2.74 2.35 2.13 0.00 3.03 0.00 4.35 6.06 2.78 1.49 0.00 3.75 0.00 12.50 2.44 3.57 2.15 5.26 0.00 2.50 3.57 4.08 0.00 3.12 2.35 2.56 3.70 23.81 3.41 4.35 4.76 5.06 2.06 1.61 1.50 5.08 K intron_retention CG7565 chr3L - chr3L_8084066_8084131 chr3L_8084065_8084066;chr3L_8084131_8084132 chr3L_8082782_8084065;chr3L_8084132_8084872 0.00 0.00 NA 2.56 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K intron_retention Neu3 chr3R - chr3R_10497246_10497330 chr3R_10497245_10497246;chr3R_10497330_10497331 chr3R_10497094_10497245;chr3R_10497331_10497525 2.11 1.97 1.91 2.92 2.22 1.72 3.21 2.95 3.55 0.00 2.68 4.27 2.13 3.95 2.29 2.25 0.85 3.45 3.31 2.98 3.51 1.19 0.79 0.48 1.52 1.75 3.15 6.19 0.00 0.00 1.45 3.64 5.00 1.36 3.03 3.54 1.98 0.00 1.56 1.31 0.00 1.89 4.10 1.45 1.82 2.59 1.92 4.29 2.11 1.96 1.61 1.40 9.52 0.00 4.24 3.20 2.68 0.00 K intron_retention I_chrX_19573364_19573474,Mer,CG14229 chrX - chrX_19587283_19587468 chrX_19587282_19587283;chrX_19587468_19587469 chrX_19586334_19587282;chrX_19587469_19587531 23.30 30.77 12.50 0.00 21.05 30.77 20.83 0.00 12.24 NA NA 12.12 NA 17.65 15.00 23.08 NA NA 14.29 13.33 15.79 NA 32.00 35.00 NA 20.00 33.33 NA 20.00 41.67 42.86 NA 42.86 22.22 NA NA 12.00 NA 23.53 56.25 NA 25.93 14.29 46.15 35.29 NA 30.77 27.27 15.15 63.16 46.15 50.00 NA NA 27.78 NA NA NA K intron_retention br,I_chrX_1517022_1518170,noncoding_21384,dor chrX + chrX_1550024_1552820 chrX_1550023_1550024;chrX_1552820_1552821 chrX_1549666_1550023;chrX_1552821_1552858 0.00 0.00 NA 22.22 0.00 4.76 NA 9.09 4.88 0.00 0.00 6.25 NA 12.50 8.33 NA NA 6.25 0.00 14.29 0.00 12.50 7.32 0.00 5.00 NA 4.76 NA 0.00 0.00 NA 0.00 0.00 5.88 0.00 10.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 13.16 3.23 0.00 0.00 1.54 NA 5.56 0.00 0.00 0.00 K intron_retention RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605,CG17258 chr2L - chr2L_3027283_3027338 chr2L_3027282_3027283;chr2L_3027338_3027339 chr2L_3027038_3027282;chr2L_3027339_3028308 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14969,RI_chr3L_3334172_3334883 chr3L - chr3L_3334172_3334226 chr3L_3334171_3334172;chr3L_3334226_3334227 chr3L_3334072_3334171;chr3L_3334227_3334703 0.00 3.64 0.00 1.96 1.92 0.00 1.89 1.27 1.07 0.00 0.00 0.00 0.00 1.59 0.00 0.00 1.54 0.00 1.03 0.76 2.27 0.00 0.00 1.79 2.56 3.17 0.00 4.65 0.00 0.00 7.14 0.00 0.00 1.35 0.00 8.70 0.00 2.04 2.44 0.00 5.71 0.71 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 0.00 0.00 0.00 0.00 0.00 3.51 0.00 0.00 K multi_cassette DCAP,E_chr2R_6159586_6174578,I_chr2R_6164310_6172914,I_chr2R_6172307_6179999,I_chr2R_6178643_6181126,RI_chr2R_6183553_6192101,I_chr2R_6188094_6192101 chr2R + chr2R_6172307_6182116 chr2R_6172307_6179999;chr2R_6180378_6180845;chr2R_6180945_6181126;chr2R_6181267_6181365;chr2R_6181439_6182116 chr2R_6180000_6180377;chr2R_6180846_6180944;chr2R_6181127_6181266;chr2R_6181366_6181438 chr2R_6172207_6172306;chr2R_6182117_6182270 100.00 75.00 100.00 NA 75.00 75.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 75.00 75.00 100.00 100.00 100.00 100.00 100.00 75.00 100.00 100.00 50.00 100.00 NA 75.00 100.00 75.00 100.00 80.00 100.00 NA 100.00 85.71 80.00 85.71 85.71 66.67 70.00 66.67 80.00 100.00 100.00 100.00 75.00 100.00 100.00 80.00 NA 100.00 75.00 100.00 75.00 75.00 66.67 K intron_retention Hydr1 chr2R + chr2R_5020853_5021103 chr2R_5020852_5020853;chr2R_5021103_5021104 chr2R_5020552_5020852;chr2R_5021104_5021275 31.66 NA NA NA NA NA NA NA NA NA NA 35.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA 13.33 NA NA 30.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG8043,CG11755 chr3R + chr3R_4502770_4502834;chr3R_4502770_4502843;chr3R_4502770_4502810 chr3R_4502770_4502817 chr3R_4502645_4502769;chr3R_4502844_4503955 5.36 NA 0.00 6.90 NA 4.55 6.67 12.00 10.34 NA NA 5.88 NA NA 3.23 7.69 NA 3.33 10.00 13.51 NA 4.00 15.00 0.00 NA 0.00 NA NA NA NA 5.71 NA NA 11.11 NA 8.70 4.76 3.70 4.76 10.00 NA 0.00 NA 4.76 NA 9.52 NA NA 8.11 NA 10.00 NA NA NA 4.55 0.00 5.00 4.00 K intron_retention CG15173,RI_chr2L_19044304_19044369 chr2L - chr2L_19043884_19043935 chr2L_19043883_19043884;chr2L_19043935_19043936 chr2L_19043535_19043883;chr2L_19043936_19044083 0.00 NA NA 12.50 NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 0.00 NA K intron_retention CG3446 chrX - chrX_6244088_6244154 chrX_6244087_6244088;chrX_6244154_6244155 chrX_6243471_6244087;chrX_6244155_6244271 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.93 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.55 0.88 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.62 K intron_retention fl(2)d,I_chr2R_9709063_9711788 chr2R - chr2R_9709631_9711975 chr2R_9709630_9709631;chr2R_9711975_9711976 chr2R_9709566_9709630;chr2R_9711976_9711987 95.45 100.00 100.00 93.10 94.12 88.24 96.77 86.67 96.67 100.00 93.33 94.87 100.00 95.45 100.00 89.19 96.55 92.31 100.00 100.00 92.31 96.55 86.36 94.44 90.91 92.86 95.45 94.12 100.00 100.00 80.65 92.31 93.33 96.30 92.86 90.91 100.00 100.00 100.00 95.65 100.00 97.37 95.00 93.10 100.00 90.91 100.00 93.75 97.62 100.00 95.45 95.00 100.00 88.89 96.43 91.67 92.86 81.25 K intron_retention CG31158,CI_chr3R_18432763_18433113,CG31159 chr3R + chr3R_18433031_18433113 chr3R_18433030_18433031;chr3R_18433113_18433114 chr3R_18432919_18433030;chr3R_18433114_18433213 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 1.39 NA 0.00 0.00 4.17 0.00 NA 2.63 6.67 0.00 6.25 5.26 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention CG9396,CG16790,RI_chr3R_5395693_5395764,CG9399,I_chr3R_5403032_5403329 chr3R - chr3R_5395310_5395370 chr3R_5395309_5395310;chr3R_5395370_5395371 chr3R_5394765_5395309;chr3R_5395371_5395692 11.11 NA NA NA NA NA NA NA 11.11 NA NA 12.50 NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA K intron_retention hipk,RI_chr3L_548068_552227 chr3L + chr3L_572546_573055 chr3L_572545_572546;chr3L_573055_573056 chr3L_572078_572545;chr3L_573056_573990 2.58 1.17 2.65 1.31 1.63 2.63 4.24 2.05 2.64 2.01 2.50 3.30 3.24 3.30 2.75 5.56 2.27 2.46 2.76 2.82 2.40 5.47 1.59 2.25 2.06 2.98 2.16 5.84 4.48 2.62 1.39 5.19 2.46 2.34 2.07 6.26 2.18 2.14 1.74 2.84 4.26 1.87 1.54 3.26 4.40 4.35 2.03 2.83 2.44 1.67 1.82 2.90 2.58 2.63 2.42 3.83 0.59 4.44 K alternative_donor Iswi chr2R + chr2R_8524243_8524348 chr2R_8524287_8524348 chr2R_8524349_8524495;chr2R_8524226_8524242 4.44 7.41 5.26 10.71 2.08 3.70 11.27 11.59 3.51 6.67 5.26 6.45 8.33 3.23 2.56 4.71 4.44 3.45 5.56 2.82 7.41 6.67 2.78 3.85 NA 17.65 5.56 NA NA 0.00 3.70 NA NA 8.82 0.00 NA 2.63 0.00 0.00 4.76 NA 8.33 7.41 0.00 NA 0.00 0.00 0.00 7.46 11.76 3.45 0.00 NA NA 8.51 5.88 0.00 0.00 K jcn_only_AD CG5316 chr3R + chr3R_15229841_15230022 chr3R_15229968_15230022 chr3R_15230023_15230471;chr3R_15229615_15229840 0.00 0.00 0.00 0.00 NA 0.00 6.67 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 2.50 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 1.96 0.00 0.00 3.45 0.00 2.70 0.00 1.89 3.85 0.00 0.00 0.00 NA 0.00 4.35 0.00 0.00 K jcn_only_AD trbd chr3R - chr3R_5535271_5536202;chr3R_5535271_5535611 chr3R_5535271_5536695 chr3R_5535110_5535270;chr3R_5536696_5536730 4.00 4.55 14.29 4.00 0.00 NA 2.86 15.62 7.02 NA 0.00 6.98 12.50 NA 0.00 8.00 10.00 25.00 5.71 4.35 NA 30.43 0.00 0.00 NA 4.76 0.00 NA 16.00 NA NA NA 8.82 2.78 0.00 0.00 0.00 4.17 0.00 4.88 NA 6.67 NA 0.00 NA 13.04 NA NA 3.45 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA K intron_retention l(2)35Bg chr2L - chr2L_15037986_15038053 chr2L_15037985_15037986;chr2L_15038053_15038054 chr2L_15036586_15037985;chr2L_15038054_15038531 0.00 0.00 0.00 1.47 0.00 0.00 0.75 1.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.91 1.55 0.58 0.00 0.00 0.00 0.53 0.00 0.00 0.81 0.96 0.00 0.00 0.52 1.01 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.99 K jcn_only_AD CG11880,I_chr3R_24949827_24951052,CE_chr3R_24962426_24962797 chr3R + chr3R_24949202_24949522;chr3R_24949222_24949522 chr3R_24949212_24949522 chr3R_24949523_24949826;chr3R_24949179_24949201 23.76 31.37 27.78 21.43 16.00 24.07 20.67 21.13 19.21 28.12 23.44 26.51 24.72 21.95 21.35 22.14 20.65 22.22 15.87 29.89 31.25 14.81 24.32 30.00 22.22 25.29 42.00 9.09 23.08 38.10 27.55 19.35 16.28 21.09 26.67 20.00 15.38 NA 27.27 30.34 29.41 16.18 19.77 29.41 26.09 18.87 31.82 17.95 24.16 32.50 17.78 40.54 8.70 20.83 28.00 35.48 36.67 28.95 K alternative_acceptor CG9425,I_chr3L_14783173_14784369 chr3L + chr3L_14783173_14784970;chr3L_14783173_14785138 chr3L_14783173_14784369 chr3L_14783073_14783172;chr3L_14785139_14785560 17.65 16.67 0.00 8.33 NA 20.00 23.08 12.50 17.65 NA 25.00 16.67 20.00 25.00 0.00 11.76 16.67 NA 10.00 21.43 NA 22.22 28.57 20.00 NA NA 20.00 50.00 20.00 16.67 16.67 NA 9.09 8.33 33.33 16.67 16.67 NA NA 11.11 NA 16.67 20.00 20.00 NA NA NA 11.11 18.18 NA 16.67 66.67 NA NA 20.00 NA NA 20.00 K intron_retention CG3499,I_chr2R_18772777_18772819 chr2R - chr2R_18773335_18773438 chr2R_18773334_18773335;chr2R_18773438_18773439 chr2R_18772937_18773334;chr2R_18773439_18773581 1.79 2.90 0.00 3.67 5.00 0.00 5.43 4.12 4.00 0.00 1.79 1.49 3.39 0.00 3.39 0.00 0.00 0.00 4.84 1.32 3.28 5.37 4.44 0.00 10.45 5.56 6.84 8.33 18.18 2.11 1.23 0.00 1.78 6.02 1.15 0.90 1.15 0.00 0.00 2.42 4.55 4.80 0.00 2.94 1.64 1.59 2.44 0.87 0.00 0.00 4.35 4.00 0.00 2.78 0.00 0.00 1.47 2.70 K intron_retention bor chr3R - chr3R_12087478_12087532 chr3R_12087477_12087478;chr3R_12087532_12087533 chr3R_12087077_12087477;chr3R_12087533_12087648 99.48 98.99 100.00 99.22 98.72 98.92 100.00 99.42 99.44 99.13 100.00 98.90 100.00 99.01 99.19 99.21 100.00 98.96 100.00 100.00 100.00 98.59 99.16 99.17 100.00 100.00 99.33 100.00 100.00 99.06 100.00 99.06 99.11 100.00 100.00 100.00 100.00 100.00 99.25 99.39 100.00 98.18 100.00 97.27 99.28 99.55 99.05 99.48 99.55 99.55 100.00 100.00 100.00 100.00 100.00 98.62 99.13 99.40 K alternative_acceptor F_chr2R_14309059_14311473,CG12263 chr2R + chr2R_14317527_14317585 chr2R_14317527_14317572 chr2R_14317078_14317526;chr2R_14317586_14317838 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.99 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 1.30 0.00 1.37 0.00 0.00 0.00 1.79 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 K intron_retention ben chrX + chrX_13890557_13892127 chrX_13890556_13890557;chrX_13892127_13892128 chrX_13890387_13890556;chrX_13892128_13892800 1.57 3.96 0.00 2.19 2.50 1.57 2.21 1.09 1.42 2.60 0.00 2.03 2.47 1.57 0.00 1.49 2.94 0.00 1.48 1.46 1.12 4.39 1.55 1.79 0.00 1.71 2.22 1.56 1.34 1.37 2.04 3.74 0.00 1.55 2.20 2.22 5.26 2.38 1.12 1.85 0.00 0.42 2.04 0.00 1.26 2.41 2.20 0.37 2.10 2.74 1.75 2.27 1.20 2.11 0.00 1.75 0.00 1.10 K intron_retention CG2604 chr3R - chr3R_1048911_1048971 chr3R_1048910_1048911;chr3R_1048971_1048972 chr3R_1047347_1048910;chr3R_1048972_1048994 12.68 14.89 10.67 13.91 8.93 11.32 15.46 11.01 10.69 11.63 13.64 9.30 11.48 12.28 13.98 10.75 6.90 5.88 7.35 14.81 11.11 14.29 22.86 11.94 28.89 13.43 37.04 46.75 38.57 4.44 12.64 15.69 15.00 8.57 17.02 26.32 8.33 14.29 10.11 9.71 30.91 9.76 12.24 12.50 10.67 16.90 12.68 16.90 11.57 15.56 13.56 14.89 9.68 16.95 11.11 18.18 13.92 12.73 K jcn_only_AD I_chr2R_17169674_17170491,CG10069,I_chr2R_17169897_17170495,I_chr2R_17170432_17170491,I_chr2R_17171765_17171886 chr2R + chr2R_17170432_17170491;chr2R_17170336_17170491;chr2R_17170070_17170491;chr2R_17169897_17170491 chr2R_17169885_17170491 chr2R_17170492_17170591;chr2R_17169869_17169884 0.70 0.00 2.38 2.80 0.00 0.00 2.63 2.06 0.83 0.00 0.00 0.70 1.54 0.00 3.45 2.06 3.08 1.75 0.00 0.60 0.00 1.47 0.95 0.00 0.00 2.63 3.61 0.00 0.00 0.00 1.18 3.17 0.00 1.65 0.00 1.54 0.78 0.00 2.50 2.12 1.52 1.48 0.00 1.33 0.00 0.00 0.00 0.00 0.72 1.89 0.00 0.00 1.56 0.00 2.53 0.00 0.00 0.00 K alternative_donor wech,I_chr2R_3373673_3377000,I_chr2R_3373673_3377045,I_chr2R_3373673_3377324,I_chr2R_3376705_3376837 chr2R - chr2R_3377076_3377324 chr2R_3377076_3377150 chr2R_3377046_3377075;chr2R_3377325_3377372 91.67 93.33 93.75 91.67 85.71 94.12 91.67 78.57 86.84 81.82 87.50 88.89 100.00 100.00 93.75 95.00 83.33 84.21 92.86 82.50 78.95 93.33 91.67 100.00 100.00 92.31 100.00 100.00 94.74 96.43 100.00 91.67 86.84 86.21 82.35 86.67 94.44 88.24 91.67 97.83 93.33 94.44 90.91 88.89 85.71 94.74 92.86 87.14 96.77 90.91 95.00 85.71 100.00 87.50 85.00 100.00 100.00 90.32 K jcn_only_AA nito,I_chr2R_3852832_3852883 chr2R + chr2R_3850109_3850273 chr2R_3850109_3850252 chr2R_3850045_3850108;chr2R_3850274_3850898 7.69 4.76 0.00 9.38 NA 0.00 8.70 12.50 11.90 NA NA 6.06 NA 0.00 10.00 7.69 NA 0.00 9.52 7.89 4.35 14.00 5.00 7.14 NA 11.11 NA NA 4.76 12.12 16.67 NA 10.71 3.33 4.35 NA 16.00 7.41 NA 6.06 NA 8.70 NA 15.15 NA 16.00 NA 12.50 4.65 NA 0.00 17.86 NA NA 7.69 0.00 NA NA K alternative_donor F_chrX_15764251_15765393,CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15764432_15765393;chrX_15764522_15765393;chrX_15764247_15765393;chrX_15764599_15765393 chrX_15764620_15765393 chrX_15765394_15765493;chrX_15764236_15764246 0.00 10.00 7.14 4.00 14.29 0.00 3.57 2.86 2.63 0.00 0.00 4.00 6.25 0.00 0.00 2.70 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 NA 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 25.00 0.00 0.00 6.67 0.00 3.45 6.67 0.00 0.00 0.00 0.00 7.69 2.56 25.00 7.69 0.00 NA 0.00 0.00 NA 0.00 12.50 K intron_retention casp,EI_chr2R_11914764_11914841 chr2R - chr2R_11912816_11912877 chr2R_11912815_11912816;chr2R_11912877_11912878 chr2R_11912756_11912815;chr2R_11912878_11913152 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette unc-104,I_chr2R_12643956_12644069,I_chr2R_12643956_12644305,RI_chr2R_12650846_12659758 chr2R - chr2R_12643956_12644305 chr2R_12643956_12644069;chr2R_12644251_12644305 chr2R_12644070_12644250 chr2R_12643856_12643955;chr2R_12644306_12644405 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG3558,RI_chr2L_2995071_2997790 chr2L + chr2L_2995071_2995435 chr2L_2995070_2995071;chr2L_2995435_2995436 chr2L_2994971_2995070;chr2L_2995436_2996435 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.37 0.00 1.20 0.50 0.00 0.00 0.00 1.31 1.98 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG18854,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789307_9789366 chr2L_9789306_9789307;chr2L_9789366_9789367 chr2L_9788783_9789306;chr2L_9789367_9789615 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.20 0.00 0.00 0.00 0.78 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Vinc,I_chrX_2114558_2115574,I_chrX_2114558_2116113 chrX - chrX_2114558_2116264 chrX_2114558_2116113 chrX_2114458_2114557;chrX_2116265_2116308 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention rhea,I_chr3L_8563622_8564067 chr3L + chr3L_8566573_8566630 chr3L_8566572_8566573;chr3L_8566630_8566631 chr3L_8566442_8566572;chr3L_8566631_8567435 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.56 0.00 0.38 2.06 0.00 0.00 0.00 1.28 0.00 1.47 0.00 0.00 0.38 K intron_retention unc-13,I_chr4_897821_902468,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_899619_903242 chr4_899618_899619;chr4_903242_903243 chr4_899519_899618;chr4_903243_903342 93.33 77.78 96.30 97.56 90.48 90.48 93.65 97.62 90.00 80.00 94.44 90.00 100.00 96.88 96.88 89.13 89.29 100.00 100.00 94.74 94.44 67.44 91.30 80.00 83.33 83.33 96.67 92.86 95.83 92.31 80.56 88.89 95.24 88.52 89.47 93.33 93.75 83.33 94.12 95.00 100.00 90.70 91.30 76.92 100.00 88.24 90.00 85.19 100.00 93.75 91.67 93.33 100.00 NA 96.55 93.33 100.00 100.00 K alternative_donor Atg18,I_chr3L_8182683_8182941 chr3L + chr3L_8180503_8180578;chr3L_8180319_8180578 chr3L_8180294_8180578 chr3L_8180579_8180676;chr3L_8180118_8180293 88.10 86.44 90.00 78.57 85.71 86.00 78.33 79.25 86.78 92.59 97.44 86.73 88.00 88.00 85.33 85.29 81.97 85.42 88.71 85.58 96.61 86.92 91.40 91.78 85.19 86.36 85.92 86.84 80.00 92.65 89.74 93.75 90.27 87.36 86.54 80.85 93.18 96.25 88.57 87.23 85.19 86.18 83.72 92.00 98.18 93.48 92.42 92.19 88.39 90.00 89.86 88.24 88.10 92.16 89.29 94.12 93.51 92.75 K alternative_acceptor CG32394,RI_chr3L_6731199_6731803,dikar chr3L - chr3L_6730773_6731803 chr3L_6731199_6731803 chr3L_6731804_6731903;chr3L_6730635_6730772 10.34 5.56 4.76 28.00 6.25 0.00 10.81 10.42 12.90 13.16 9.09 11.11 17.39 6.67 10.34 8.11 5.26 0.00 10.71 11.54 4.17 47.06 8.70 10.71 15.79 21.74 8.11 21.88 17.07 27.27 4.35 7.69 30.00 10.87 15.00 26.47 13.33 4.76 10.26 14.81 20.00 7.94 9.09 12.00 NA 12.50 10.00 19.67 3.77 10.00 9.30 5.56 5.56 NA 9.68 NA NA 5.00 N alternative_donor I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545799_17545850;chr2R_17545615_17545850;chr2R_17545781_17545850;chr2R_17545686_17545850;chr2R_17545690_17545850 chr2R_17545767_17545850 chr2R_17545851_17545985;chr2R_17545613_17545614 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 15.38 0.00 0.00 0.00 0.00 0.00 0.00 18.18 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention E_chrX_2341497_2346020,z chrX + chrX_2342698_2342818 chrX_2342697_2342698;chrX_2342818_2342819 chrX_2341802_2342697;chrX_2342819_2343360 0.00 0.00 0.00 4.08 3.23 0.00 2.78 2.94 4.62 0.00 0.00 2.13 0.00 0.00 3.70 0.00 0.00 0.00 0.00 3.77 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 1.52 0.00 1.67 2.08 0.00 0.00 0.00 0.00 0.00 5.26 0.00 6.25 4.44 0.00 4.88 0.00 0.00 0.00 3.33 0.00 0.00 0.00 K jcn_only_AA Cortactin chr3R - chr3R_16889831_16890016 chr3R_16889834_16890016 chr3R_16890017_16890085;chr3R_16889620_16889830 12.25 10.24 10.49 17.34 13.25 13.58 8.85 13.60 12.86 9.68 12.10 16.92 14.53 11.69 12.33 13.17 9.46 11.56 8.43 9.51 12.25 9.87 12.38 11.71 10.96 11.29 11.07 13.77 9.57 10.70 13.42 13.04 9.58 14.74 13.42 13.39 11.76 14.55 15.15 13.69 13.60 12.17 15.54 12.89 7.77 11.69 12.31 10.47 11.92 13.25 16.16 13.93 9.72 14.83 11.60 12.90 9.72 10.80 K cassette Slip1,RI_chr4_684967_689045,I_chr4_685717_686576,RI_chr4_685717_689045,RI_chr4_687548_689045 chr4 + chr4_684967_686576 chr4_684967_685613;chr4_685729_686576 chr4_685614_685728 chr4_684914_684966;chr4_686577_686676 87.50 87.88 93.75 98.67 88.00 84.62 84.91 88.89 82.93 100.00 100.00 87.93 87.88 87.50 89.19 80.95 82.05 100.00 82.93 86.75 96.55 86.36 90.00 84.62 90.48 80.49 97.22 100.00 82.35 77.42 91.89 78.57 92.86 81.82 85.00 96.15 96.67 90.00 90.32 86.49 83.33 83.33 86.67 87.50 86.67 83.33 94.44 94.44 83.87 90.91 88.10 90.48 69.23 77.78 86.27 85.71 88.00 65.38 K intron_retention RhoGAP71E,I_chr3L_15583097_15589765 chr3L + chr3L_15594396_15599758 chr3L_15594395_15594396;chr3L_15599758_15599759 chr3L_15594333_15594395;chr3L_15599759_15600439 25.00 37.50 13.33 43.75 28.57 NA 55.56 34.21 30.56 13.64 21.43 37.93 29.17 28.57 45.45 NA 35.71 NA 33.33 25.00 NA 10.29 20.00 29.41 18.75 8.33 50.00 58.82 18.52 19.05 46.67 25.00 13.79 48.00 19.05 25.00 23.68 21.05 21.05 38.30 25.00 23.68 46.15 21.74 4.17 21.74 NA 20.37 42.31 NA 25.93 33.33 NA NA 44.44 NA NA 17.39 K intron_retention Rnp4F,I_chrX_5214525_5214591 chrX - chrX_5215537_5215594 chrX_5215536_5215537;chrX_5215594_5215595 chrX_5214592_5215536;chrX_5215595_5215770 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.27 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG32364 chr3L - chr3L_8203336_8203412 chr3L_8203358_8203412 chr3L_8203413_8203481;chr3L_8203272_8203335 88.46 92.73 86.36 93.59 94.12 88.37 84.38 89.06 81.58 88.57 90.24 91.67 90.91 95.00 82.69 93.06 87.80 82.69 88.37 79.26 90.48 84.29 85.57 86.05 89.47 84.78 89.39 87.50 80.33 94.23 94.00 85.71 86.05 88.73 93.22 89.86 83.33 91.67 87.95 88.64 84.42 88.17 82.05 88.46 86.36 83.33 98.48 76.92 89.25 86.73 96.39 79.66 90.00 88.61 89.55 89.53 92.31 81.19 K intron_retention CG7536,I_chrX_17976413_17979287,I_chrX_17976413_17979359,CG7206 chrX - chrX_17976413_17979230 chrX_17976412_17976413;chrX_17979230_17979231 chrX_17976313_17976412;chrX_17979231_17979526 6.94 5.71 6.90 11.11 7.41 9.52 11.76 11.43 11.27 NA 0.00 7.32 0.00 14.29 12.12 13.79 10.53 3.85 7.69 6.67 7.41 9.09 0.00 8.11 0.00 13.79 4.17 12.50 9.68 0.00 7.41 0.00 5.56 7.50 0.00 0.00 4.55 6.67 8.00 2.78 0.00 8.70 8.70 1.72 0.00 7.89 0.00 6.98 8.89 0.00 5.56 0.00 0.00 14.29 9.09 5.26 0.00 0.00 K intron_retention RpL32,I_chr3R_25871509_25871807 chr3R - chr3R_25871509_25871583 chr3R_25871508_25871509;chr3R_25871583_25871584 chr3R_25871409_25871508;chr3R_25871584_25871727 15.50 13.33 NA 35.71 42.86 NA 23.08 29.41 15.62 16.67 NA 26.67 NA NA 28.57 11.54 NA 12.00 NA 26.32 NA 12.68 20.00 5.26 10.00 15.38 25.00 41.18 5.81 7.69 8.70 24.14 14.29 25.00 25.00 11.76 16.33 6.67 12.82 14.58 25.71 27.27 NA 9.68 8.57 13.51 10.53 15.38 26.32 10.26 17.65 12.50 28.57 7.69 35.71 7.69 20.83 40.00 K jcn_only_AA Pcf11,RI_chr2R_10753287_10754988 chr2R - chr2R_10753272_10754988;chr2R_10753287_10754988;chr2R_10753557_10754988;chr2R_10753581_10754988 chr2R_10753239_10754988 chr2R_10754989_10755088;chr2R_10753187_10753238 71.68 66.67 88.46 66.67 90.48 76.47 57.58 67.74 68.75 66.67 73.91 78.38 NA 73.91 70.00 NA 73.91 NA 80.00 71.93 NA 75.00 73.47 82.76 NA 60.00 70.27 72.97 75.00 NA 70.37 NA 71.43 77.78 NA NA 78.18 78.79 63.16 55.32 NA 67.35 NA 64.29 NA 54.17 66.67 59.26 72.09 NA 59.52 NA NA NA 78.26 NA NA NA K intron_retention mmd chrX - chrX_15845970_15847905 chrX_15845969_15845970;chrX_15847905_15847906 chrX_15845235_15845969;chrX_15847906_15847932 14.29 13.33 11.76 30.00 14.29 14.29 36.36 20.00 13.51 NA NA 20.83 30.77 NA 13.04 29.41 NA 0.00 17.39 19.30 NA NA NA NA NA 10.00 NA NA NA NA 9.09 NA NA 3.70 NA NA NA NA NA NA NA 19.35 17.65 14.29 NA NA NA NA 13.64 NA 12.50 NA NA NA 17.65 NA 0.00 NA K intron_retention Hel25E,I_chr2L_5540301_5540396 chr2L - chr2L_5540301_5540971 chr2L_5540300_5540301;chr2L_5540971_5540972 chr2L_5540201_5540300;chr2L_5540972_5541090 4.69 3.56 4.30 3.81 2.97 4.15 6.64 4.50 3.73 10.80 3.37 3.97 6.33 3.72 4.66 6.00 4.76 3.78 3.82 3.70 4.15 6.38 4.84 4.66 6.69 3.18 7.08 7.27 7.93 4.77 15.91 8.12 12.86 4.30 4.67 5.41 5.11 2.77 3.96 8.65 16.13 4.69 4.16 7.13 5.50 7.69 5.43 18.18 4.17 5.77 5.11 4.16 4.59 3.54 3.85 5.07 3.41 11.38 K alternative_acceptor Spc105R chr3L + chr3L_20799475_20799538 chr3L_20799475_20799533 chr3L_20799025_20799474;chr3L_20799539_20799958 100.00 NA 87.50 93.33 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 100.00 NA 100.00 90.00 NA 100.00 NA 100.00 NA NA 100.00 NA NA NA NA 100.00 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 K cassette plx chr3R + chr3R_1533664_1534220 chr3R_1533664_1533742;chr3R_1533905_1534220 chr3R_1533743_1533904 chr3R_1532906_1533663;chr3R_1534221_1535108 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 13.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.92 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.22 2.08 NA 0.00 0.00 0.00 4.76 0.00 0.00 1.85 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG6805 chr2R + chr2R_12894013_12894293 chr2R_12894012_12894013;chr2R_12894293_12894294 chr2R_12892983_12894012;chr2R_12894294_12894563 0.00 0.00 0.00 1.27 1.41 0.00 0.00 2.08 0.00 3.70 0.00 1.46 3.95 0.00 0.00 0.00 0.00 0.00 0.00 2.29 0.00 4.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.90 0.00 0.00 1.32 2.11 0.00 2.25 1.06 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 K alternative_donor Cctgamma chr3R + chr3R_12473409_12473557;chr3R_12473318_12473557;chr3R_12473479_12473557;chr3R_12473420_12473557;chr3R_12473464_12473557 chr3R_12473424_12473557 chr3R_12473558_12473651;chr3R_12473311_12473317 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 K alternative_donor CG11790,CG11791 chr3R + chr3R_20876340_20876902;chr3R_20875669_20876902 chr3R_20876091_20876902 chr3R_20876903_20877278;chr3R_20875600_20875668 6.25 11.76 7.89 2.94 7.14 12.90 4.00 5.71 6.41 8.00 7.41 3.39 7.32 5.71 5.71 1.79 7.14 4.76 4.35 4.21 7.41 12.90 4.76 7.50 6.25 3.33 3.12 9.52 3.85 7.41 4.26 8.00 9.68 5.88 0.00 14.29 5.71 8.00 14.71 8.20 6.45 5.97 6.90 4.88 5.26 4.65 7.50 2.33 5.41 2.22 5.56 7.41 6.45 9.09 4.35 5.56 6.67 6.35 K jcn_only_AD Tequila chr3L + chr3L_9068723_9080948 chr3L_9080889_9080948 chr3L_9080949_9081215 89.58 86.42 89.13 40.32 93.48 95.45 94.64 89.58 91.61 72.00 NA 100.00 94.44 88.68 92.42 94.81 92.31 88.24 90.28 99.42 92.06 80.00 90.22 87.36 78.57 73.85 86.90 68.18 57.50 91.38 89.80 93.33 79.17 89.53 85.29 90.70 90.55 NA 88.89 83.21 88.57 91.38 95.12 89.52 89.47 93.65 88.89 85.57 91.67 53.49 92.98 91.18 84.09 88.00 85.29 95.35 91.23 89.71 N intron_retention Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824086_11825790 chr2R_11824085_11824086;chr2R_11825790_11825791 chr2R_11823989_11824085 100.00 100.00 NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA 72.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA NA NA 100.00 100.00 K alternative_donor woc,I_chr3R_23089174_23089688,I_chr3R_23089174_23089695,I_chr3R_23096096_23096561 chr3R - chr3R_23089174_23089688;chr3R_23089174_23089695 chr3R_23089174_23089498 chr3R_23089074_23089173;chr3R_23089696_23089772 94.87 94.64 87.84 90.65 95.16 95.92 94.74 93.81 96.47 94.74 94.83 97.28 88.24 97.01 96.43 94.44 96.49 92.06 92.41 93.68 93.55 81.40 95.12 95.31 97.83 95.45 98.00 97.44 94.87 96.92 97.85 96.67 96.74 96.61 93.18 97.73 96.72 93.62 93.85 93.28 94.74 95.71 98.36 95.31 87.80 94.74 93.75 94.17 96.58 92.59 98.55 97.67 96.77 94.44 93.48 96.88 87.50 92.31 K jcn_only_AD CG10992,RI_chrX_13675767_13676018 chrX - chrX_13675767_13675872;chrX_13675767_13675842 chrX_13675767_13676018 chrX_13675699_13675766;chrX_13676019_13676118 0.00 0.00 0.00 0.13 0.00 0.18 0.12 0.00 0.00 0.00 0.00 0.10 0.53 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.23 0.14 0.28 0.23 0.00 0.24 0.00 0.00 0.55 0.40 0.00 0.22 0.00 0.21 0.00 0.00 0.18 0.14 0.35 0.00 0.00 0.00 0.00 0.25 0.00 0.17 0.39 0.00 0.00 0.37 0.42 0.00 0.44 0.15 0.22 0.00 0.64 K intron_retention Pros54 chr3L + chr3L_21530481_21530540 chr3L_21530480_21530481;chr3L_21530540_21530541 chr3L_21530340_21530480;chr3L_21530541_21531683 0.00 0.78 0.00 0.00 0.83 0.00 0.00 0.00 1.14 0.00 0.00 0.81 0.88 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.88 1.28 0.00 0.00 2.08 6.67 2.70 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.75 0.00 1.22 1.14 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 4.00 0.00 0.00 0.00 0.00 0.72 0.00 K intron_retention CG4567 chr2L - chr2L_7220678_7220741 chr2L_7220677_7220678;chr2L_7220741_7220742 chr2L_7220272_7220677;chr2L_7220742_7220804 0.00 0.00 0.00 0.00 0.00 0.00 6.45 0.00 5.71 0.00 NA 5.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 12.50 5.41 0.00 NA 5.56 0.00 15.38 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention pnt,I_chr3R_19118404_19119566,I_chr3R_19139278_19163617,I_chr3R_19181524_19181702 chr3R - chr3R_19118404_19137703 chr3R_19118403_19118404;chr3R_19137703_19137704 chr3R_19118304_19118403;chr3R_19137704_19137928 0.64 1.09 0.00 2.93 3.20 3.42 5.36 4.19 3.17 0.00 0.00 3.08 5.15 5.88 2.47 5.00 2.41 0.96 1.02 1.39 2.73 0.00 1.23 0.00 0.00 3.70 0.45 0.00 0.00 0.84 5.26 0.00 0.00 4.22 1.33 0.55 0.64 1.37 0.31 0.00 0.00 2.97 1.08 0.00 0.00 0.00 0.00 0.00 2.67 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 K intron_retention CG4699 chr3R + chr3R_11619676_11620550 chr3R_11619675_11619676;chr3R_11620550_11620551 chr3R_11619539_11619675;chr3R_11620551_11621301 16.03 33.33 15.15 13.64 20.00 13.04 27.59 14.58 22.22 NA 25.00 13.73 26.32 23.08 7.41 10.42 23.81 10.71 14.81 15.38 14.29 24.24 19.15 14.81 23.53 15.38 12.50 33.33 20.00 26.32 12.50 23.08 20.00 18.75 13.79 25.00 30.00 18.18 12.50 12.90 30.77 15.38 17.65 25.00 NA 28.57 5.56 14.81 10.53 25.00 10.26 16.67 0.00 NA 13.33 13.33 NA NA K intron_retention CG9636,RI_chr3R_4068335_4068401 chr3R - chr3R_4068299_4068401 chr3R_4068298_4068299;chr3R_4068401_4068402 chr3R_4068235_4068298;chr3R_4068402_4068501 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor tra chr3L - chr3L_16583856_16584103 chr3L_16584031_16584103 chr3L_16584104_16584490;chr3L_16583452_16583855 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor PhKgamma,I_chrX_11589428_11589856,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11589297_11589856;chrX_11589418_11589856;chrX_11589313_11589856 chrX_11589428_11589856 chrX_11589857_11589956;chrX_11589195_11589296 0.00 0.00 0.00 7.69 NA 0.00 0.00 0.00 8.33 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 7.14 NA 0.00 7.69 0.00 0.00 0.00 12.50 0.00 0.00 0.00 0.00 NA 11.11 0.00 0.00 0.00 0.00 0.00 6.67 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Rbp2,I_chrX_16343528_16343906 chrX + chrX_16344535_16345307 chrX_16344634_16345307 chrX_16345308_16345592;chrX_16344347_16344534 6.31 5.67 14.04 4.78 5.41 14.04 6.31 5.56 1.68 6.44 13.85 2.33 0.00 2.70 10.39 6.38 9.43 12.50 17.24 3.33 19.05 3.87 9.43 7.24 2.92 12.73 6.46 1.30 12.99 6.32 12.90 10.54 6.27 6.88 6.58 6.03 4.08 3.74 7.99 2.54 2.95 4.49 9.84 13.03 4.99 6.30 8.13 9.89 5.67 2.21 4.70 5.11 12.17 6.08 8.79 6.02 5.54 12.80 K intron_retention CG3634 chr3L - chr3L_20801874_20801938 chr3L_20801873_20801874;chr3L_20801938_20801939 chr3L_20800222_20801873;chr3L_20801939_20802284 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG16941 chr3R - chr3R_12827751_12827872 chr3R_12827750_12827751;chr3R_12827872_12827873 chr3R_12827586_12827750;chr3R_12827873_12828058 0.00 0.00 NA 6.45 0.00 0.00 0.00 4.55 4.44 0.00 NA 0.00 NA 0.00 12.50 12.00 NA 0.00 7.69 0.00 NA 0.00 0.00 5.26 0.00 NA 5.00 0.00 0.00 0.00 NA 3.23 0.00 3.03 0.00 0.00 0.00 0.00 2.56 0.00 0.00 4.88 NA 0.00 0.00 6.25 0.00 3.41 6.25 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 1.67 K jcn_only_AD RpL18A,I_chr2R_13434492_13434554,I_chr2R_13434492_13434576 chr2R - chr2R_13434492_13434576;chr2R_13434492_13434554 chr2R_13434492_13434913 chr2R_13434392_13434491;chr2R_13434914_13434994 99.72 99.83 99.85 99.84 99.74 99.92 99.69 99.96 99.82 99.69 99.86 99.88 99.82 99.92 99.87 99.97 99.90 99.93 99.91 99.90 99.97 98.46 98.52 98.17 97.78 99.86 97.36 99.75 97.64 99.44 99.80 99.72 99.66 99.88 99.77 99.29 99.36 99.26 98.90 99.71 99.41 99.94 99.92 99.72 99.64 99.41 99.38 99.81 99.76 98.73 98.28 99.52 99.59 94.74 99.91 99.55 99.63 99.63 K intron_retention Fis1,I_chr2R_1491917_1491981,I_chr2R_1491917_1492087,I_chr2R_1492154_1492214 chr2R - chr2R_1492022_1492214 chr2R_1492021_1492022;chr2R_1492214_1492215 chr2R_1491982_1492021;chr2R_1492215_1492311 70.00 72.73 53.33 80.85 NA 77.78 86.67 59.26 76.74 NA NA 57.58 61.54 87.50 90.00 64.58 52.38 63.64 56.25 53.85 70.00 NA 70.59 NA NA 69.23 62.50 NA 75.00 63.64 50.00 NA NA 79.31 70.00 75.00 45.45 NA NA 88.89 NA 79.17 69.23 76.92 NA 88.89 NA NA 73.68 75.00 60.00 73.33 NA NA 57.14 55.56 66.67 90.00 K jcn_only_AA Dscam,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3251271_3255892;chr2R_3254472_3255892;chr2R_3253610_3255892;chr2R_3250700_3255892;chr2R_3252685_3255892;chr2R_3251854_3255892;chr2R_3250996_3255892;chr2R_3254133_3255892;chr2R_3252123_3255892;chr2R_3252988_3255892 chr2R_3252399_3255892 chr2R_3255893_3255920 4.76 9.09 7.69 14.29 3.12 0.00 11.11 7.32 4.29 NA NA 0.00 NA 4.17 2.33 3.33 4.76 NA 0.00 0.00 9.38 6.67 3.85 5.13 2.63 0.00 12.24 16.67 4.65 4.65 5.56 NA 1.82 6.52 0.00 3.85 7.58 6.45 9.23 5.97 NA 0.00 0.00 5.13 NA 0.00 3.70 8.82 7.41 5.00 2.27 13.04 NA NA 12.00 13.04 4.35 NA K alternative_donor Aats-val chr2R + chr2R_9086429_9086478;chr2R_9086421_9086478 chr2R_9086425_9086478 chr2R_9086479_9086689;chr2R_9086375_9086420 90.91 NA 100.00 100.00 NA NA NA NA 83.33 NA NA NA NA NA 88.89 60.00 NA NA NA 80.00 NA NA NA NA NA 88.89 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA N multi_cassette CG7956,CE_chr3R_17350242_17350304 chr3R + chr3R_17350238_17351248 chr3R_17350238_17350300;chr3R_17350372_17350806;chr3R_17351141_17351248 chr3R_17350301_17350371;chr3R_17350807_17351140 chr3R_17350142_17350237;chr3R_17351249_17351485 6.25 10.00 12.50 2.70 0.00 NA 2.44 5.26 5.56 NA 9.09 6.25 4.55 9.09 8.33 12.00 9.09 3.45 15.79 15.00 11.11 0.00 2.08 5.41 3.45 4.17 3.45 3.85 6.67 4.35 12.90 7.69 14.81 7.89 5.00 20.00 4.76 0.00 6.67 4.76 11.76 8.16 5.56 7.69 9.52 8.33 11.11 18.18 9.43 2.63 5.00 5.56 NA NA 4.35 4.17 3.85 25.00 K intron_retention fs(1)h,I_chrX_7950171_7952371,RI_chrX_7954192_7954783,I_chrX_7954192_7955240 chrX - chrX_7954192_7954909 chrX_7954191_7954192;chrX_7954909_7954910 chrX_7954092_7954191;chrX_7954910_7954919 0.00 5.00 0.00 0.00 0.00 NA 3.28 0.00 2.33 NA 0.00 3.85 0.00 5.71 0.00 0.00 0.00 16.67 0.00 5.66 0.00 NA 4.55 NA NA 0.00 NA NA 14.29 NA 0.00 NA NA 4.17 7.69 NA NA NA NA 8.33 NA 0.00 0.00 4.35 NA NA NA 4.76 3.08 NA 0.00 NA NA NA 0.00 NA NA NA K alternative_donor Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21121740_21122250 chr2L_21121770_21122250 chr2L_21122251_21122389;chr2L_21121716_21121739 9.09 6.25 8.57 10.81 10.53 9.09 10.00 13.89 19.51 5.56 5.88 10.81 5.88 7.14 4.76 8.33 NA 21.43 0.00 13.89 4.55 16.28 11.43 10.34 4.76 10.53 6.25 6.67 17.65 10.53 9.09 16.67 17.65 11.43 6.25 9.68 11.11 0.00 8.33 2.17 12.50 7.14 5.88 5.13 NA 10.00 13.33 16.67 13.79 NA 5.00 4.76 NA NA 8.70 0.00 14.29 8.00 K jcn_only_AD wal,I_chr2R_7577394_7578043,I_chr2R_7578254_7578317 chr2R - chr2R_7577394_7578043 chr2R_7577394_7577950 chr2R_7577294_7577393;chr2R_7578044_7578091 99.58 100.00 99.57 98.03 100.00 99.55 100.00 100.00 99.77 100.00 99.46 99.43 100.00 98.31 100.00 98.59 100.00 100.00 99.53 99.74 100.00 98.73 99.58 99.59 100.00 100.00 99.45 100.00 98.66 99.33 98.90 98.80 99.42 99.04 99.14 98.56 100.00 99.52 99.61 99.63 99.24 99.76 98.87 100.00 100.00 99.58 100.00 99.53 99.17 100.00 100.00 99.43 98.45 98.68 99.55 100.00 99.55 100.00 K intron_retention vir-1,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,noncoding_2764,I_chr2L_12421830_12423260 chr2L - chr2L_12421830_12423322 chr2L_12421829_12421830;chr2L_12423322_12423323 chr2L_12421816_12421829;chr2L_12423323_12423328 4.96 5.12 6.69 7.68 10.00 6.37 6.61 9.76 5.68 1.69 8.18 3.53 6.20 4.56 10.67 2.91 6.87 6.82 8.82 2.94 11.80 2.05 2.20 3.70 7.69 8.89 4.63 7.62 3.48 3.85 3.08 4.45 8.84 8.15 3.91 5.91 1.88 4.01 4.96 7.26 6.23 8.40 7.78 3.00 6.03 2.50 2.03 2.20 5.27 3.01 3.07 2.20 3.74 3.17 6.20 1.96 2.03 3.22 K intron_retention mal chrX + chrX_20302554_20302614 chrX_20302553_20302554;chrX_20302614_20302615 chrX_20301771_20302553;chrX_20302615_20304320 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 3.45 0.00 0.00 0.00 0.00 NA 14.29 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 9.09 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 8.00 NA 0.00 NA NA NA NA 0.00 0.00 NA K jcn_only_AD CG30344,RI_chr2R_5033951_5034150,I_chr2R_5036518_5036570 chr2R + chr2R_5033478_5034150 chr2R_5033951_5034150 chr2R_5034151_5034250;chr2R_5033378_5033477 14.29 17.95 22.92 7.94 22.22 2.63 19.54 9.33 15.46 39.13 14.29 14.81 26.47 15.38 15.52 18.99 16.00 13.64 6.38 18.60 21.88 10.87 10.00 13.11 18.18 12.12 15.25 18.92 13.16 5.13 30.19 7.69 3.23 15.94 12.82 20.83 18.92 9.52 7.69 7.25 3.33 12.50 8.57 8.11 NA 9.43 20.69 6.25 11.49 15.22 17.02 14.29 11.90 15.38 7.69 18.18 17.81 4.08 K jcn_only_AD dlg1,I_chrX_11298230_11299306 chrX + chrX_11283731_11284263 chrX_11283815_11284263 chrX_11284264_11284573;chrX_11283729_11283730 95.00 NA NA NA NA NA NA 90.00 95.45 NA NA 86.21 NA NA NA 95.65 NA NA NA 88.89 NA 95.00 90.00 95.00 100.00 75.00 NA 100.00 95.45 NA NA NA 90.00 NA 90.32 93.10 NA NA NA 95.92 NA 84.00 NA 96.15 NA NA 95.00 95.00 70.37 NA 85.71 95.00 NA NA NA NA NA NA K intron_retention CG18624,RI_chrX_7787450_7787620,RI_chrX_7787450_7787687,RI_chrX_7787524_7787687 chrX - chrX_7787450_7787620 chrX_7787449_7787450;chrX_7787620_7787621 chrX_7787424_7787449;chrX_7787621_7787704 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.58 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.88 100.00 100.00 99.67 99.03 100.00 100.00 100.00 100.00 100.00 100.00 98.90 99.31 99.38 99.37 99.52 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.90 100.00 100.00 99.62 100.00 99.63 100.00 100.00 100.00 100.00 100.00 100.00 99.23 100.00 100.00 99.75 K jcn_only_AA Nedd4,I_chr3L_17532828_17532882,I_chr3L_17532828_17533787,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17532837_17533790 chr3L_17532837_17533787 chr3L_17532667_17532836;chr3L_17533791_17533887 9.13 6.06 10.34 10.38 8.04 8.82 4.27 10.53 8.17 6.78 7.96 10.60 9.21 11.11 10.62 0.00 12.90 5.10 10.68 5.56 6.52 14.53 10.66 9.66 7.28 11.36 8.38 4.65 12.69 12.77 8.44 8.11 7.75 5.53 12.50 5.30 9.33 6.15 8.27 8.84 16.44 11.95 6.52 11.31 9.35 11.00 7.32 12.15 9.13 8.93 8.90 13.74 9.09 14.52 9.40 12.09 10.98 4.44 K jcn_only_AD I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10068715,I_chr2R_10067437_10068984,I_chr2R_10068194_10068715 chr2R + chr2R_10064197_10068715;chr2R_10067437_10068715 chr2R_10068325_10068715 chr2R_10068716_10068805 1.89 2.83 3.95 8.24 4.41 1.96 1.82 5.15 0.50 1.14 0.00 2.22 2.22 8.33 3.51 3.12 0.00 2.63 1.89 3.00 3.51 0.44 0.00 1.20 1.83 1.82 0.72 0.00 0.00 2.80 5.88 2.47 2.42 2.65 0.00 10.00 0.00 0.00 0.40 0.62 12.90 3.38 4.44 1.69 1.74 5.88 3.20 3.70 0.83 0.00 1.88 1.09 2.70 1.68 1.64 0.79 0.75 12.73 K alternative_donor PhKgamma,I_chrX_11590179_11590249,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11590345_11590435;chrX_11589973_11590435 chrX_11590179_11590435 chrX_11590436_11590535;chrX_11589857_11589972 5.56 0.00 8.33 17.65 0.00 0.00 7.14 23.53 10.34 0.00 20.00 4.55 12.50 22.22 7.69 7.69 0.00 0.00 12.50 5.56 0.00 3.33 4.55 0.00 0.00 9.09 0.00 0.00 4.17 13.33 20.00 7.14 8.70 7.69 0.00 11.11 9.52 0.00 5.88 5.56 5.56 6.06 10.00 5.26 5.56 0.00 16.67 3.45 11.76 0.00 4.76 0.00 0.00 0.00 0.00 0.00 7.14 7.14 K jcn_only_AD CG5445,I_chrX_17198393_17198730 chrX + chrX_17198393_17198730 chrX_17198404_17198730 chrX_17198731_17198830;chrX_17198293_17198392 100.00 100.00 100.00 100.00 98.04 100.00 100.00 98.04 99.19 100.00 100.00 98.86 100.00 100.00 100.00 100.00 97.06 100.00 100.00 98.08 96.55 100.00 98.26 98.96 98.04 100.00 98.89 97.65 97.10 100.00 100.00 100.00 96.97 96.23 100.00 100.00 99.14 98.68 100.00 98.33 100.00 98.13 NA 100.00 96.72 100.00 100.00 100.00 96.88 100.00 100.00 100.00 98.55 100.00 100.00 100.00 100.00 97.30 K intron_retention CG8334,I_chr3L_19870731_19870822 chr3L + chr3L_19873297_19873357 chr3L_19873296_19873297;chr3L_19873357_19873358 chr3L_19873111_19873296;chr3L_19873358_19873825 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K cassette betaInt-nu chr2L + chr2L_21053362_21054993 chr2L_21053362_21053426;chr2L_21053645_21054993 chr2L_21053427_21053644 chr2L_21053285_21053361;chr2L_21054994_21055744 60.32 59.09 69.23 47.37 65.00 56.52 60.19 63.51 55.65 60.61 55.56 62.50 58.82 62.26 60.00 63.53 57.14 60.32 63.04 66.07 87.10 14.29 41.03 66.67 50.00 53.57 69.70 50.00 77.14 57.45 48.84 71.43 55.88 62.03 48.57 57.58 69.70 48.00 70.00 48.72 58.82 66.27 62.50 68.57 68.75 57.58 62.50 72.31 52.22 50.00 61.54 48.48 60.71 53.85 58.46 72.22 61.36 73.91 K intron_retention rump,RI_chr3R_5335093_5335157,I_chr3R_5338175_5338299 chr3R - chr3R_5335739_5335884 chr3R_5335738_5335739;chr3R_5335884_5335885 chr3R_5335158_5335738;chr3R_5335885_5336044 4.12 2.58 4.95 5.20 6.52 3.10 3.45 3.23 4.30 7.25 3.85 4.35 4.55 3.79 3.23 2.58 1.71 3.50 2.11 3.70 3.94 3.50 3.17 3.73 4.44 4.38 3.60 3.81 7.14 5.00 5.08 4.71 6.87 2.82 4.00 6.02 5.86 4.14 5.03 6.53 5.56 4.18 2.40 2.16 4.58 5.38 4.35 5.41 3.72 4.12 2.05 6.93 3.48 3.85 3.31 4.03 5.05 6.74 K jcn_only_AD CG7414,I_chr3L_21819515_21819581 chr3L + chr3L_21819853_21820193 chr3L_21820136_21820193 chr3L_21820194_21820958;chr3L_21819575_21819852 25.04 26.89 22.49 29.26 22.87 20.67 37.50 31.34 30.95 23.27 34.55 25.04 23.36 21.88 22.31 22.86 27.89 30.37 33.82 23.72 32.10 33.33 17.65 24.55 24.68 23.77 19.65 16.92 19.52 27.19 31.66 24.09 40.74 30.23 23.91 20.16 23.92 22.81 24.80 33.27 24.68 27.24 30.59 30.52 25.00 24.94 21.46 27.17 25.39 24.08 27.32 25.46 27.99 23.16 30.39 25.34 25.97 31.34 K intron_retention cul-2,I_chr2L_21658962_21659119,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21658855_21659094 chr2L_21658854_21658855;chr2L_21659094_21659095 chr2L_21658557_21658854;chr2L_21659095_21659272 61.90 58.93 55.70 54.81 50.00 47.27 75.79 41.41 48.70 75.68 47.06 57.48 39.68 50.00 51.90 44.63 50.00 42.19 47.19 43.12 37.50 82.76 75.81 75.93 83.56 70.67 78.17 89.74 75.00 76.60 57.14 72.97 67.95 58.49 57.33 78.67 64.18 69.23 61.90 67.65 83.58 49.60 50.82 74.42 63.64 69.23 51.16 64.10 44.88 64.29 60.92 66.67 55.88 72.22 57.50 63.41 71.43 74.36 K alternative_acceptor mRpL20,I_chr3L_13010705_13010775,RI_chr3L_13010729_13010775 chr3L - chr3L_13010729_13010775;chr3L_13010713_13010775 chr3L_13010705_13010775 chr3L_13010776_13010875;chr3L_13010629_13010704 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 2.17 0.00 0.00 0.00 4.55 0.00 6.45 0.00 0.00 0.00 NA 0.00 4.35 7.14 0.00 4.76 0.00 7.14 0.00 7.69 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 7.14 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 K intron_retention mthl4 chr2R - chr2R_13332926_13332994 chr2R_13332925_13332926;chr2R_13332994_13332995 chr2R_13332739_13332925;chr2R_13332995_13333189 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.54 NA 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 K intron_retention Mmp1,I_chr2R_20564123_20565214,I_chr2R_20569965_20572193 chr2R - chr2R_20569965_20572229 chr2R_20569964_20569965;chr2R_20572229_20572230 chr2R_20569865_20569964;chr2R_20572230_20572242 0.00 3.23 2.78 0.00 0.00 0.00 0.00 0.00 0.81 1.82 0.00 0.00 0.00 0.00 0.00 2.08 0.00 6.25 3.92 0.00 3.85 7.69 0.00 0.00 3.85 0.00 0.00 12.90 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD sec24,I_chr2R_5768722_5769689 chr2R - chr2R_5768722_5769384;chr2R_5768722_5769689 chr2R_5768722_5769687 chr2R_5768622_5768721;chr2R_5769690_5769789 96.67 100.00 100.00 96.79 100.00 96.51 96.35 97.79 97.11 94.83 88.46 95.76 98.73 97.03 96.52 94.62 97.78 95.12 95.74 98.00 92.19 97.74 98.04 93.94 99.19 100.00 95.71 97.00 94.03 98.59 99.20 98.08 97.44 98.54 96.15 97.12 94.64 95.45 96.67 99.02 100.00 97.44 94.79 96.55 90.48 96.59 96.61 95.38 95.40 96.05 95.88 98.57 97.14 100.00 95.49 96.61 95.52 100.00 K alternative_donor CG11658,I_chr3L_11704048_11704107 chr3L - chr3L_11700672_11701507;chr3L_11700672_11701407 chr3L_11700672_11701491 chr3L_11700405_11700671;chr3L_11701508_11701663 20.00 NA NA NA NA 25.00 36.36 NA 22.22 NA 16.67 8.33 8.33 NA NA 20.00 12.50 NA 11.11 14.29 NA NA 20.00 5.56 25.00 NA 16.67 NA 33.33 NA NA NA 37.50 37.50 NA 9.09 NA NA 11.11 25.00 NA 31.25 NA NA NA 23.08 20.00 14.29 23.08 NA 11.11 NA NA NA NA NA NA NA K jcn_only_AA Exp6,I_chrX_368653_368730,I_chrX_368673_368730,I_chrX_369347_369797 chrX - chrX_368540_368730 chrX_368673_368730 chrX_368731_368830;chrX_368343_368539 0.00 0.00 0.00 5.88 0.00 0.00 3.23 0.00 0.00 0.00 NA 2.33 0.00 NA 0.00 0.00 0.00 3.45 8.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 NA NA NA 0.00 0.00 NA 0.00 K cassette CG8232 chr2R + chr2R_4817886_4818095 chr2R_4817886_4817938;chr2R_4818039_4818095 chr2R_4817939_4818038 chr2R_4817764_4817885;chr2R_4818096_4818145 94.78 90.70 90.62 95.52 93.94 85.71 95.74 96.67 94.81 88.24 95.00 93.44 93.94 100.00 96.88 92.86 86.67 97.37 97.56 94.38 96.67 97.37 94.44 95.74 91.30 88.57 95.00 NA 90.00 93.75 82.69 100.00 93.75 92.31 100.00 92.00 97.37 91.67 97.06 95.45 94.74 95.59 96.88 97.44 100.00 96.55 92.68 95.83 94.59 88.89 88.89 97.06 96.30 96.55 95.45 90.91 86.36 94.74 K cassette CG16833,I_chr2L_10994022_10994325,I_chr2L_10994919_10997334 chr2L + chr2L_10989875_10991058 chr2L_10989875_10989973;chr2L_10990784_10991058 chr2L_10989974_10990783 chr2L_10989656_10989874;chr2L_10991059_10991885 75.00 57.89 71.43 55.56 81.82 77.78 62.50 44.44 69.70 81.25 57.14 65.38 75.00 81.82 63.16 80.77 63.64 94.74 47.06 60.61 64.29 97.67 79.31 88.89 81.82 61.54 81.82 75.00 72.73 81.82 75.00 100.00 78.12 68.18 90.91 75.00 74.07 70.59 79.17 63.89 87.50 66.67 100.00 68.42 93.75 66.67 66.67 70.37 68.00 84.62 78.26 88.89 68.75 87.50 56.25 75.00 90.91 65.22 K alternative_donor Dbp80 chr3LHet + chr3LHet_2543798_2543887 chr3LHet_2543829_2543887 chr3LHet_2543888_2543917;chr3LHet_2543765_2543797 93.94 100.00 90.91 87.50 100.00 100.00 92.31 90.62 93.10 NA NA 90.00 92.31 100.00 100.00 96.15 100.00 92.86 94.12 100.00 NA NA NA NA NA NA 100.00 NA NA 100.00 93.33 NA NA 94.74 NA NA NA NA NA 93.75 NA 85.00 91.67 100.00 NA 100.00 92.00 NA 91.67 NA 100.00 NA NA 100.00 100.00 84.62 78.57 90.91 N jcn_only_AD CG2003 chr3R + chr3R_27815189_27815312;chr3R_27815253_27815312 chr3R_27815249_27815312 chr3R_27815313_27816636;chr3R_27815109_27815188 95.48 92.31 97.37 97.14 94.83 96.59 96.10 97.56 88.68 90.32 97.62 85.81 93.33 100.00 96.63 93.75 94.29 95.95 95.74 97.01 95.65 100.00 81.48 97.06 97.56 98.15 92.86 84.85 100.00 91.25 62.50 81.69 81.51 96.00 97.96 90.70 80.30 81.43 96.34 82.08 95.74 95.48 98.33 100.00 98.78 81.82 94.44 86.02 97.99 92.50 94.25 93.88 96.00 95.56 96.77 82.81 95.10 89.78 K jcn_only_AD CG6359,I_chr3R_8454231_8454610 chr3R + chr3R_8454231_8454610 chr3R_8454243_8454610 chr3R_8454611_8454706;chr3R_8454210_8454230 100.00 100.00 100.00 100.00 99.13 99.65 100.00 100.00 100.00 100.00 99.49 100.00 100.00 100.00 99.69 99.58 100.00 100.00 100.00 100.00 99.57 99.73 99.76 100.00 100.00 100.00 99.74 99.51 100.00 100.00 100.00 100.00 99.43 99.43 100.00 100.00 100.00 100.00 100.00 100.00 99.60 100.00 99.51 100.00 99.70 100.00 100.00 99.46 100.00 99.75 99.68 100.00 99.37 99.69 99.69 100.00 99.81 100.00 K intron_retention CG11092 chrX + chrX_13718950_13719033 chrX_13718949_13718950;chrX_13719033_13719034 chrX_13718321_13718949;chrX_13719034_13720060 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 K intron_retention CG7843,I_chr2R_1972736_1972822 chr2R - chr2R_1971390_1971445 chr2R_1971389_1971390;chr2R_1971445_1971446 chr2R_1971012_1971389;chr2R_1971446_1971512 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 6.52 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4598,RI_chr2L_9920233_9920324 chr2L + chr2L_9919317_9919375 chr2L_9919316_9919317;chr2L_9919375_9919376 chr2L_9919175_9919316;chr2L_9919376_9919892 0.00 0.00 0.00 5.41 0.00 0.00 0.00 1.39 0.00 0.00 0.00 2.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 1.06 0.00 0.00 1.15 2.38 2.70 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 2.33 6.25 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 4.88 K alternative_acceptor CG4996,E_chr2R_13627553_13627643,I_chr2R_13629549_13629609 chr2R + chr2R_13627863_13627923 chr2R_13627863_13627919 chr2R_13627644_13627862;chr2R_13627924_13628237 96.00 100.00 90.91 96.00 100.00 NA 95.00 93.33 100.00 NA 100.00 95.65 100.00 100.00 100.00 100.00 100.00 NA 87.50 95.24 100.00 100.00 95.24 100.00 90.91 100.00 81.25 90.91 100.00 100.00 88.24 NA NA 100.00 90.91 92.86 93.33 100.00 93.75 92.86 NA 94.74 NA 93.75 NA NA NA NA 94.12 NA 100.00 100.00 NA NA 90.91 100.00 NA NA K jcn_only_AD torp4a chrX - chrX_4543548_4543605 chrX_4543548_4543601 chrX_4542975_4543547;chrX_4543606_4544015 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.41 0.27 0.00 0.68 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.51 0.00 0.00 0.60 0.00 0.00 0.71 2.25 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.60 0.00 0.58 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2389073;chrX_2389272_2390808;chrX_2390959_2391350;chrX_2391522_2393243 chrX_2387584_2387709;chrX_2388437_2388670;chrX_2389074_2389271;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2393244_2393291 20.00 NA NA NA NA NA NA 20.00 28.57 NA NA 5.26 NA NA NA NA NA NA 20.00 20.00 NA NA NA NA NA NA NA NA NA NA NA NA 12.50 20.00 NA 0.00 11.11 NA NA 6.67 NA 20.00 NA 28.57 NA NA NA 28.57 16.67 NA NA NA NA NA 25.00 NA NA NA K cassette Dystrophin chr3R + chr3R_15388549_15415845 chr3R_15388549_15396742;chr3R_15396794_15415845 chr3R_15396743_15396793 chr3R_15388391_15388548;chr3R_15415846_15416093 4.17 5.71 6.90 4.55 3.45 4.17 0.00 3.45 2.99 4.76 NA 5.77 3.85 8.33 3.45 8.33 3.85 8.70 4.00 12.20 0.00 4.65 4.88 6.67 5.00 4.55 2.38 NA 3.23 6.25 6.25 0.00 2.94 3.92 0.00 3.85 3.28 0.00 5.00 0.00 0.00 6.12 10.00 0.00 0.00 2.56 0.00 3.12 8.51 8.70 5.13 4.17 4.76 0.00 6.25 10.71 4.00 5.56 K alternative_acceptor Sdc,RI_chr2R_17286086_17286391,I_chr2R_17286089_17286391,I_chr2R_17286819_17367595,I_chr2R_17324594_17367595 chr2R - chr2R_17286086_17286391 chr2R_17286089_17286391 chr2R_17286392_17286491;chr2R_17286037_17286085 78.41 NA NA 63.64 NA NA NA NA 87.50 NA 61.54 NA NA NA NA NA NA NA NA 75.00 60.00 NA NA NA NA NA NA NA NA NA NA NA 84.21 NA NA 88.89 NA NA NA NA NA NA NA NA NA NA NA 81.82 NA NA NA NA NA NA NA NA NA NA K alternative_acceptor mRpL20,I_chr3L_13010705_13010775,RI_chr3L_13010729_13010775 chr3L - chr3L_13010705_13010775;chr3L_13010713_13010775 chr3L_13010729_13010775 chr3L_13010776_13010875;chr3L_13010629_13010704 3.12 0.00 3.70 11.11 0.00 4.17 0.00 7.69 3.12 0.00 6.25 2.17 0.00 0.00 3.85 9.09 0.00 3.23 0.00 3.12 0.00 NA 3.45 4.35 7.14 4.35 0.00 0.00 0.00 0.00 11.54 0.00 8.70 6.67 0.00 0.00 5.88 0.00 0.00 0.00 0.00 3.12 0.00 7.14 3.85 3.45 3.70 0.00 4.88 7.14 3.57 0.00 7.41 0.00 3.85 3.70 0.00 3.33 K jcn_only_AD EI_chr3R_7069743_7070508,CG5214,I_chr3R_7070289_7070508,I_chr3R_7070385_7070508 chr3R + chr3R_7069743_7070508 chr3R_7070239_7070508 chr3R_7070509_7070608;chr3R_7069738_7069742 99.24 100.00 100.00 97.95 98.99 98.36 97.62 98.70 99.59 98.55 98.86 98.99 100.00 100.00 98.12 99.24 100.00 99.17 100.00 100.00 100.00 98.77 100.00 100.00 98.84 100.00 100.00 100.00 98.45 100.00 95.49 98.81 99.39 100.00 99.12 97.67 98.60 100.00 99.44 97.64 99.15 99.57 97.89 98.27 99.22 100.00 99.20 99.59 100.00 100.00 100.00 98.33 98.95 100.00 98.62 100.00 99.26 98.53 K jcn_only_AD CG4365 chr3L + chr3L_20791960_20792242;chr3L_20792089_20792242;chr3L_20792100_20792242;chr3L_20792077_20792242 chr3L_20791819_20792242 chr3L_20792243_20793181;chr3L_20791802_20791818 67.86 57.69 67.86 73.33 NA NA 81.48 78.57 77.61 NA 73.17 82.61 NA 80.95 68.75 61.29 75.00 67.86 88.46 79.22 70.59 63.64 44.44 69.23 NA 44.83 25.00 60.87 NA NA 61.54 NA 51.72 86.11 NA NA 59.26 39.29 65.22 89.29 NA 69.09 80.65 61.90 40.91 59.26 72.73 60.00 66.67 66.67 66.67 NA 63.41 56.52 73.33 57.14 74.14 71.88 K intron_retention CG34140,CG34140_Mkp,noncoding_9561 chr3L - chr3L_183703_183757 chr3L_183702_183703;chr3L_183757_183758 chr3L_183640_183702;chr3L_183758_183819 0.00 6.06 0.00 5.17 0.00 4.76 3.39 8.06 0.00 0.00 12.00 2.13 4.76 6.25 11.76 5.41 2.63 0.00 0.00 3.77 0.00 0.00 2.38 0.00 0.00 3.70 18.18 14.29 0.00 0.00 0.00 NA 0.00 5.00 6.25 9.09 2.33 0.00 0.00 5.56 0.00 4.69 0.00 2.63 0.00 4.35 0.00 NA 3.03 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Baldspot,I_chr3L_16644636_16654570,I_chr3L_16652567_16652897,I_chr3L_16652567_16654296,RI_chr3L_16652567_16654506,RI_chr3L_16652567_16654512 chr3L - chr3L_16652567_16654570 chr3L_16652567_16654510 chr3L_16652467_16652566;chr3L_16654571_16654606 5.26 4.06 4.75 6.19 4.58 3.75 5.31 12.14 5.89 7.69 3.91 4.40 8.18 3.34 4.35 2.28 8.26 3.12 5.54 5.07 2.63 0.56 5.03 4.82 6.81 7.11 7.05 5.73 7.03 4.63 4.86 6.67 4.08 5.33 4.21 8.25 6.02 3.41 5.32 2.53 6.19 4.67 5.22 5.71 5.32 4.81 3.72 6.71 5.29 2.68 5.46 6.47 5.86 6.19 5.26 6.54 4.52 3.52 K cassette nrv2,I_chr2L_6791842_6794492,I_chr2L_6793397_6794492,I_chr2L_6793405_6793916,I_chr2L_6793405_6794499,I_chr2L_6793684_6794492 chr2L - chr2L_6791842_6794492 chr2L_6791842_6793227;chr2L_6793405_6794492 chr2L_6793228_6793404 chr2L_6791742_6791841;chr2L_6794493_6794592 97.44 94.87 97.78 98.25 100.00 100.00 97.14 96.43 98.70 95.65 95.24 97.06 96.43 100.00 97.87 98.53 94.12 100.00 95.65 98.67 100.00 100.00 94.59 94.23 95.45 100.00 97.44 100.00 84.21 93.55 97.44 92.31 93.33 100.00 100.00 100.00 97.92 92.68 94.12 97.83 96.30 97.33 97.30 97.50 97.87 98.00 97.22 98.63 98.92 92.59 100.00 100.00 96.30 90.00 100.00 100.00 93.33 96.10 K intron_retention Nipped-B,I_chr2R_580989_582555,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_580674_580752 chr2R_580673_580674;chr2R_580752_580753 chr2R_580516_580673;chr2R_580753_580862 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3018018_3018278 chr2L_3018017_3018018;chr2L_3018278_3018279 chr2L_3017982_3018017;chr2L_3018279_3018287 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 98.21 NA 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 96.97 100.00 90.91 100.00 100.00 NA 90.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 94.44 NA 100.00 100.00 100.00 100.00 87.50 NA NA 100.00 NA 90.91 100.00 K intron_retention CG17841 chrX + chrX_10276143_10276213 chrX_10276142_10276143;chrX_10276213_10276214 chrX_10275692_10276142;chrX_10276214_10276543 0.70 0.00 1.22 0.82 1.17 1.54 0.69 0.00 0.98 0.00 0.00 0.34 0.72 0.79 0.00 1.03 0.81 0.00 1.82 1.55 0.00 1.38 0.82 0.38 0.00 0.00 0.77 1.01 0.00 0.82 0.00 1.43 1.12 0.46 0.00 1.01 0.53 0.00 0.63 0.56 1.52 0.93 0.00 0.29 2.08 0.00 1.45 0.85 1.58 0.88 0.00 0.63 0.00 0.00 1.52 0.70 0.41 1.35 K jcn_only_AD CG1927,RI_chr3L_1967428_1967489,RI_chr3L_1967503_1967958,RI_chr3L_1967503_1968077 chr3L - chr3L_1967503_1969599 chr3L_1967503_1967958 chr3L_1967490_1967502;chr3L_1969600_1970134 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.38 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.79 0.00 0.00 0.00 0.00 0.91 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG31531,I_chr3R_485548_485960,I_chr3R_485608_485960,noncoding_14584,I_chr3R_486122_506500,I_chr3R_496573_505950,I_chr3R_523978_526879 chr3R + chr3R_485608_485960;chr3R_485399_485960 chr3R_485616_485960 chr3R_485961_486060;chr3R_485382_485398 50.00 47.62 52.38 70.00 72.22 55.00 37.50 50.00 58.33 37.50 45.45 37.21 55.56 52.38 39.13 50.00 47.62 NA 57.69 52.94 NA 38.10 31.25 43.48 50.00 50.00 34.48 57.89 52.63 55.00 44.44 77.78 57.14 57.14 55.00 68.42 31.43 28.57 33.33 30.30 75.00 64.86 52.94 34.48 NA 69.23 45.45 50.00 58.97 43.75 61.76 45.00 NA NA 51.85 NA 40.00 62.50 K intron_retention exba,RI_chr3R_1425087_1425302,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1425087_1425759 chr3R_1425086_1425087;chr3R_1425759_1425760 chr3R_1424987_1425086;chr3R_1425760_1425812 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 3.85 4.35 K intron_retention CG12203,I_chrX_19400271_19400518 chrX + chrX_19387031_19387089 chrX_19387030_19387031;chrX_19387089_19387090 chrX_19386710_19387030;chrX_19387090_19387391 0.00 3.19 0.00 6.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.54 4.17 0.00 0.00 0.00 0.00 0.00 0.00 2.99 3.57 2.27 0.00 2.00 6.82 4.17 4.48 3.28 0.00 0.00 0.00 1.47 0.00 0.00 0.00 1.85 1.64 4.00 3.51 0.00 0.00 3.36 0.00 0.00 0.00 0.00 0.00 0.00 2.33 1.32 0.00 3.92 0.00 1.06 1.37 3.23 0.71 0.00 K intron_retention RpL22,noncoding_21234 chrX - chrX_658776_658832 chrX_658775_658776;chrX_658832_658833 chrX_658629_658775;chrX_658833_658955 100.00 100.00 100.00 99.83 100.00 100.00 100.00 100.00 99.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.91 100.00 99.89 99.85 100.00 99.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.85 100.00 100.00 100.00 100.00 100.00 99.88 100.00 100.00 K intron_retention CG2857,RpL41 chr2R - chr2R_20791312_20791403 chr2R_20791311_20791312;chr2R_20791403_20791404 chr2R_20791245_20791311;chr2R_20791404_20791472 0.03 0.00 0.01 0.05 0.00 0.01 0.04 0.02 0.02 0.03 0.00 0.03 0.03 0.03 0.02 0.01 0.00 0.02 0.02 0.02 0.01 0.00 0.07 0.03 0.08 0.20 0.45 0.16 0.45 0.00 0.01 0.04 0.03 0.00 0.19 0.17 0.06 0.00 0.03 0.05 0.18 0.01 0.00 0.06 0.03 0.06 0.04 0.03 0.06 0.04 0.06 0.00 0.12 0.19 0.02 0.07 0.03 0.03 K alternative_donor Smg5,I_chr2L_13903932_13904208 chr2L - chr2L_13903932_13904397 chr2L_13903932_13904379 chr2L_13903832_13903931;chr2L_13904398_13904515 0.00 0.00 0.00 3.85 0.00 0.00 2.78 0.00 2.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 NA 2.50 10.00 6.90 4.88 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 NA 0.00 2.38 0.00 0.00 3.45 0.00 0.00 0.00 0.00 2.99 0.00 NA 3.23 NA 0.00 NA 0.00 NA NA 0.00 K intron_retention nonA,I_chrX_16256088_16259237,I_chrX_16265109_16265346 chrX + chrX_16259676_16260936 chrX_16259675_16259676;chrX_16260936_16260937 chrX_16259620_16259675;chrX_16260937_16261442 2.92 0.00 5.13 18.92 4.76 8.57 7.50 3.57 8.51 NA 0.00 4.62 8.70 8.00 5.00 8.00 7.41 0.00 4.17 3.28 0.00 0.00 0.00 7.14 NA 7.69 5.56 0.00 9.52 6.25 10.81 0.00 2.56 3.45 NA 7.41 0.00 0.00 0.00 4.76 0.00 1.25 0.00 5.88 0.00 0.00 0.00 4.35 7.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG34408,I_chrX_10120689_10121004 chrX + chrX_10120689_10121435;chrX_10120689_10121444 chrX_10120689_10121381 chrX_10120589_10120688;chrX_10121445_10121990 3.40 5.13 0.00 12.12 0.00 0.00 2.50 0.00 2.04 17.39 0.00 0.00 0.00 4.00 8.70 0.00 NA 3.70 NA 7.41 0.00 15.15 4.08 2.33 NA NA 6.45 21.74 0.00 0.00 5.71 3.03 9.62 5.00 3.57 2.78 6.45 7.89 2.22 8.70 3.12 5.00 NA 6.67 2.94 2.17 5.71 15.38 2.00 3.23 5.66 3.70 2.33 0.00 5.71 11.11 2.33 0.00 K jcn_only_AA wge chr3R - chr3R_18542387_18542655;chr3R_18542390_18542655 chr3R_18542354_18542655 chr3R_18542656_18542685;chr3R_18540256_18542353 63.20 67.35 61.90 47.06 60.00 NA 25.00 62.50 70.69 70.00 NA 47.92 NA NA 72.00 NA NA NA NA 64.29 NA 43.30 71.88 70.27 61.76 36.36 63.89 53.33 40.32 50.94 65.85 68.57 68.03 74.29 79.49 23.08 60.49 72.00 73.85 55.00 50.00 74.00 NA 61.22 72.00 58.62 86.96 52.38 73.81 50.00 50.00 30.00 75.68 NA 79.17 33.33 83.78 73.68 N cassette CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_254972_260939;chr4_257102_260939 chr4_257102_257894,chr4_254972_257894;chr4_258186_260939 chr4_257895_258185 chr4_254893_254971;chr4_260940_261024 100.00 100.00 96.43 82.05 91.67 95.65 97.87 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG17255,I_chrX_10359089_10359175,RI_chrX_10366177_10367270 chrX - chrX_10359089_10359175 chrX_10359101_10359175 chrX_10359176_10359275;chrX_10358989_10359088 99.83 99.75 99.56 100.00 100.00 100.00 100.00 100.00 99.35 100.00 99.50 100.00 100.00 100.00 99.65 100.00 100.00 99.25 100.00 99.63 100.00 99.83 99.46 99.27 99.02 100.00 99.63 99.72 99.16 100.00 100.00 100.00 100.00 99.67 100.00 99.68 99.71 100.00 99.47 99.61 100.00 99.83 100.00 99.67 100.00 100.00 99.77 99.27 100.00 100.00 99.77 99.45 100.00 98.89 99.00 100.00 99.00 99.12 K intron_retention CG16940,I_chr3L_212783_212843,Kaz1-ORFA_Kaz1-ORFB chr3L + chr3L_215625_215682 chr3L_215624_215625;chr3L_215682_215683 chr3L_215505_215624;chr3L_215683_215751 17.78 21.74 9.09 60.71 13.04 12.50 23.26 26.47 23.21 22.22 12.50 13.33 25.93 20.00 31.25 26.67 22.22 12.00 15.00 15.49 33.33 31.91 23.26 2.70 30.00 66.67 33.33 20.59 42.31 12.20 33.33 13.16 8.62 20.00 17.65 43.75 12.20 12.00 17.50 15.62 32.26 21.95 11.11 12.50 13.64 8.62 5.26 12.07 19.51 17.78 13.16 16.00 20.00 11.11 24.00 22.58 10.42 7.78 K intron_retention RpS26 chr2L - chr2L_18442439_18442504 chr2L_18442438_18442439;chr2L_18442504_18442505 chr2L_18442370_18442438;chr2L_18442505_18443070 86.58 85.71 81.82 93.27 88.89 80.00 86.89 90.00 84.09 NA 90.48 86.49 84.62 78.57 92.86 88.89 76.47 96.55 83.33 86.36 90.91 81.82 93.10 90.00 93.75 92.86 85.71 81.82 91.67 84.62 74.07 94.44 96.15 80.56 66.67 91.67 78.57 93.33 93.33 87.10 96.43 80.56 87.50 88.24 90.62 88.00 81.82 86.67 81.08 80.77 75.86 78.26 63.64 83.33 91.30 76.19 84.62 100.00 K alternative_donor Nipped-B,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_616057_617208;chr2R_616057_616318;chr2R_616057_616311 chr2R_616057_616283 chr2R_615957_616056;chr2R_617209_617308 30.00 27.27 20.00 38.10 16.67 40.00 34.15 29.17 30.77 0.00 44.44 17.14 21.43 30.43 33.33 36.36 37.50 37.50 33.33 31.58 42.86 28.57 41.67 37.50 30.00 25.00 29.41 50.00 25.00 42.86 28.57 NA 25.00 34.48 33.33 46.15 33.33 40.00 25.00 26.67 NA 20.00 20.00 21.43 NA 0.00 0.00 44.44 27.59 20.00 21.05 30.77 50.00 NA 25.00 100.00 0.00 25.00 K intron_retention Rho1,I_chr2R_11990455_11992537,RI_chr2R_11991687_11992537 chr2R + chr2R_11990455_11992537 chr2R_11990454_11990455;chr2R_11992537_11992538 chr2R_11990435_11990454;chr2R_11992538_11992637 89.18 90.91 85.71 76.67 100.00 82.61 87.10 68.97 80.56 90.91 66.67 86.49 83.33 81.25 66.67 81.25 NA 92.86 88.24 94.44 90.91 92.86 93.33 78.95 92.86 89.47 83.33 93.33 62.50 93.75 93.75 95.00 92.86 80.00 88.24 88.89 83.33 93.33 91.67 82.93 95.65 90.48 90.00 96.15 88.57 88.57 83.33 97.37 89.74 71.43 95.24 90.00 91.67 85.71 85.71 100.00 80.00 92.11 K intron_retention CG1640,RI_chrX_13265127_13267895,I_chrX_13265553_13267895,I_chrX_13265618_13267895,RI_chrX_13266680_13267895,RI_chrX_13267529_13267895,I_chrX_13271541_13271890 chrX + chrX_13265094_13267895 chrX_13265093_13265094;chrX_13267895_13267896 chrX_13265065_13265093;chrX_13267896_13267973 14.29 17.65 10.53 28.57 16.67 6.67 21.43 25.00 14.29 NA NA 20.83 14.29 NA 17.65 17.39 36.36 14.29 14.29 6.06 12.50 13.04 NA 12.50 NA 15.38 20.00 NA 8.33 4.35 6.67 4.76 9.30 16.00 11.76 NA 15.38 9.09 7.41 19.15 17.65 20.00 7.69 18.75 0.00 15.38 NA 12.90 14.81 12.50 9.09 14.29 6.67 NA NA 15.38 14.29 7.27 K cassette Mlf,noncoding_7111,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824086_11825619;chr2R_11824086_11825951;chr2R_11824089_11825619;chr2R_11824089_11825951 chr2R_11824089_11825183,chr2R_11824086_11825183;chr2R_11825385_11825619,chr2R_11825385_11825951 chr2R_11825184_11825384 chr2R_11823989_11824085;chr2R_11825952_11826483 56.14 57.79 58.55 71.74 54.15 64.86 40.20 65.58 68.10 22.49 53.51 70.07 40.37 54.65 56.85 69.95 57.41 41.75 57.22 69.27 57.69 81.57 55.21 50.92 40.17 54.36 46.52 34.28 43.52 53.74 56.60 57.02 53.81 62.54 54.02 55.56 57.52 55.45 56.60 57.64 42.86 61.98 62.68 60.40 50.00 51.64 50.90 47.88 62.09 54.13 57.00 45.98 69.23 52.52 57.40 55.18 56.14 61.98 K intron_retention CG2924,I_chrX_2160549_2160629,I_chrX_2160702_2160852,I_chrX_2160752_2160852,I_chrX_2163738_2164560,I_chrX_2168373_2168893 chrX - chrX_2160705_2160852 chrX_2160704_2160705;chrX_2160852_2160853 chrX_2160652_2160704;chrX_2160853_2160952 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.40 0.00 2.25 0.00 0.00 0.00 0.00 6.45 0.00 1.54 0.00 3.85 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 1.15 0.00 1.20 1.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Tre1,I_chrX_5568743_5568799,I_chrX_5569518_5570588 chrX - chrX_5568743_5568803 chrX_5568743_5568799 chrX_5568643_5568742;chrX_5568804_5568899 0.00 0.00 0.85 0.70 0.00 0.00 0.83 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.46 0.00 0.49 0.48 0.00 0.00 0.00 0.61 1.82 0.00 0.00 0.00 0.00 0.00 0.59 1.27 1.50 0.89 0.66 0.00 0.61 0.00 0.37 0.00 0.67 0.00 0.00 0.53 0.83 0.46 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 K intron_retention CG17912,I_chr2L_16748617_16749055,I_chr2L_16749189_16749266 chr2L + chr2L_16748617_16749055 chr2L_16748616_16748617;chr2L_16749055_16749056 chr2L_16748517_16748616;chr2L_16749056_16749155 90.91 90.91 NA 76.19 NA NA 100.00 100.00 89.47 NA NA 78.57 NA 87.50 NA 100.00 NA NA 100.00 92.86 NA NA 90.91 87.50 NA NA 83.33 NA NA 100.00 NA NA NA 85.71 NA NA 86.67 80.00 90.00 NA NA 93.75 NA 69.23 NA 100.00 NA NA 93.33 NA 90.91 90.00 NA NA 90.91 100.00 NA NA K intron_retention RI_chr2R_13458667_13458738,Rab4,I_chr2R_13461027_13461136 chr2R + chr2R_13461027_13461136 chr2R_13461026_13461027;chr2R_13461136_13461137 chr2R_13461020_13461026;chr2R_13461137_13461179 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 95.74 100.00 100.00 100.00 97.50 100.00 100.00 100.00 97.22 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.55 100.00 97.56 96.00 100.00 94.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 100.00 96.30 K intron_retention I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10065344,I_chr2R_10064197_10068715,I_chr2R_10067437_10068984,I_chr2R_10068194_10068715 chr2R + chr2R_10064197_10065365 chr2R_10064196_10064197;chr2R_10065365_10065366 chr2R_10064117_10064196;chr2R_10065366_10065380 32.43 28.00 41.18 22.41 34.48 29.63 24.53 32.73 32.35 35.29 16.22 58.82 41.67 28.57 42.86 46.81 33.33 25.00 35.48 33.78 22.86 12.70 21.57 34.78 47.37 21.74 20.59 20.00 26.92 24.32 38.71 38.89 34.00 35.71 23.08 24.24 45.16 33.33 32.35 23.64 31.82 32.14 26.32 33.33 24.00 40.62 36.00 33.33 42.11 22.73 21.95 31.03 42.86 41.67 32.43 43.75 26.09 33.33 K jcn_only_AA exba,RI_chr3R_1425087_1425302,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1425890_1426009;chr3R_1425813_1426009 chr3R_1425087_1426009 chr3R_1426010_1426024 53.12 NA NA NA NA NA NA 45.00 62.96 NA NA NA NA NA NA 21.74 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA 60.00 NA NA 53.12 63.64 NA NA NA NA NA NA NA NA K intron_retention gp210,I_chr2R_1653709_1654789,I_chr2R_1655359_1655422 chr2R + chr2R_1655067_1655124 chr2R_1655066_1655067;chr2R_1655124_1655125 chr2R_1654968_1655066;chr2R_1655125_1655358 0.00 0.00 0.00 1.36 0.00 0.00 0.00 1.13 0.95 0.00 0.00 1.12 0.00 0.00 0.00 0.50 0.00 0.00 0.82 1.25 0.00 3.92 1.41 0.00 0.00 0.00 0.00 0.00 0.00 1.59 2.83 0.00 2.11 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG14450,noncoding_14201 chr3L - chr3L_22720578_22720631 chr3L_22720578_22720627 chr3L_22720157_22720577;chr3L_22720632_22720843 6.67 NA NA NA NA NA NA NA 9.52 NA NA 5.26 NA NA NA NA NA NA NA 14.29 NA NA 6.67 NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 5.00 NA NA NA NA NA NA 13.64 12.50 6.67 NA NA NA NA NA 6.67 6.67 K jcn_only_AD 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5987603_5991760,I_chr2R_5988662_5991760,I_chr2R_5988666_5991760,I_chr2R_5988919_5991760,I_chr2R_5988931_5991760,I_chr2R_5990647_5991760,I_chr2R_5991249_5991760,I_chr2R_5991689_5991760,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5987356_5991760;chr2R_5987237_5991760 chr2R_5987244_5991760 chr2R_5991761_5991860;chr2R_5987235_5987236 37.26 34.26 38.08 40.81 63.84 35.08 34.64 40.92 53.76 20.83 45.88 34.37 47.18 39.80 39.44 41.88 54.60 55.75 37.25 48.61 42.47 39.50 29.22 38.46 31.96 29.76 25.27 23.68 36.45 27.35 38.47 38.21 36.36 37.26 9.21 8.57 65.62 40.44 34.62 31.44 29.17 41.91 41.94 28.68 42.39 20.92 33.18 32.97 37.69 38.21 17.24 45.02 20.16 12.12 38.59 32.77 43.52 30.28 K alternative_donor CG18596,I_chr3R_18203637_18203690,I_chr3R_18209085_18209133 chr3R + chr3R_18203633_18203690 chr3R_18203637_18203690 chr3R_18203691_18203790;chr3R_18203566_18203632 0.00 0.00 0.00 3.23 NA NA 2.56 3.70 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 4.55 NA NA 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 3.33 0.00 0.00 NA NA 0.00 NA 0.00 NA K intron_retention Vinc,I_chrX_2114558_2116113 chrX - chrX_2109156_2109287 chrX_2109155_2109156;chrX_2109287_2109288 chrX_2108388_2109155;chrX_2109288_2109686 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 1.59 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG11309,I_chr3L_21297192_21297708 chr3L - chr3L_21296650_21297009 chr3L_21296650_21296907;chr3L_21296938_21297009 chr3L_21296908_21296937 chr3L_21295987_21296649;chr3L_21297010_21297190 0.00 0.00 0.00 10.00 0.00 0.00 5.00 2.78 0.00 0.00 0.00 0.00 0.00 NA 4.76 0.00 0.00 7.14 5.56 0.00 5.56 0.00 0.00 2.70 0.00 0.00 3.03 2.27 0.00 0.00 3.85 0.00 4.35 0.00 4.17 5.88 0.00 0.00 3.45 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 K alternative_acceptor Rfx,I_chr3R_6198928_6200931 chr3R - chr3R_6198232_6198462 chr3R_6198256_6198462 chr3R_6198463_6198898;chr3R_6197871_6198231 7.14 NA NA 14.29 NA NA NA NA 9.68 NA NA 3.23 NA NA NA NA NA NA NA 3.57 NA 4.17 17.65 NA NA NA NA NA 16.67 NA NA NA 15.00 14.29 NA 20.00 6.25 NA 12.50 5.56 NA 0.00 NA NA NA NA 7.14 5.56 5.56 NA 18.75 NA 7.14 NA 0.00 NA NA NA K alternative_acceptor CG17689 chr3L + chr3L_13501646_13502149 chr3L_13501646_13501975 chr3L_13500035_13501645;chr3L_13502150_13502434 10.81 10.53 5.56 22.22 NA 14.29 5.56 9.09 11.90 7.14 NA 10.53 46.67 25.00 7.41 7.69 7.69 8.33 5.88 6.56 0.00 18.33 15.22 15.15 18.75 12.00 13.79 18.52 18.00 9.30 0.00 14.71 11.94 12.00 17.24 24.24 9.09 10.81 6.15 14.81 16.67 14.89 7.69 13.16 5.56 14.58 7.41 10.81 12.50 11.54 13.16 9.09 4.35 6.67 5.26 8.82 8.33 8.47 K intron_retention osa chr3R - chr3R_13520018_13520555 chr3R_13520017_13520018;chr3R_13520555_13520556 chr3R_13519858_13520017;chr3R_13520556_13520621 0.00 NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA 14.29 NA 0.00 NA NA 5.26 NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA K cassette Bx,I_chrX_18429458_18461543 chrX + chrX_18429458_18461543 chrX_18429458_18460728;chrX_18461172_18461543 chrX_18460729_18461171 chrX_18429358_18429457;chrX_18461544_18461643 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention RpS11,I_chr2R_8087545_8087698,I_chr2R_8087747_8088193 chr2R - chr2R_8087747_8088193 chr2R_8087746_8087747;chr2R_8088193_8088194 chr2R_8087699_8087746;chr2R_8088194_8088293 97.92 96.15 95.45 100.00 100.00 100.00 96.88 96.15 97.87 100.00 100.00 97.56 100.00 94.74 96.15 97.37 94.44 100.00 100.00 97.96 100.00 100.00 92.68 96.67 100.00 100.00 97.37 96.43 97.92 100.00 87.93 97.06 97.14 96.67 96.55 100.00 100.00 100.00 91.67 100.00 96.97 100.00 100.00 100.00 97.30 97.83 100.00 100.00 100.00 97.62 100.00 94.12 96.23 97.30 100.00 97.62 100.00 98.31 K alternative_acceptor CG8080,RI_chr2R_4978542_4978911,REI_chr2R_4978545_4978911,REI_chr2R_4979159_4979234,I_chr2R_4979276_4979936 chr2R - chr2R_4978545_4978911;chr2R_4978542_4978911 chr2R_4978557_4978911 chr2R_4978912_4979011;chr2R_4978445_4978541 73.68 87.50 75.00 72.73 69.23 70.00 63.64 82.35 80.77 75.00 71.43 90.91 87.50 69.23 75.00 83.33 83.33 69.23 63.64 63.64 76.92 100.00 75.00 72.22 57.14 78.57 69.23 62.50 72.73 78.57 71.43 77.78 78.57 71.43 72.73 100.00 69.57 68.18 81.82 68.57 76.92 75.00 84.62 84.62 73.68 70.37 65.00 72.73 72.00 54.17 80.95 80.00 77.78 82.35 73.33 76.47 72.73 68.00 K intron_retention nudE chr3L + chr3L_9892456_9892825 chr3L_9892455_9892456;chr3L_9892825_9892826 chr3L_9892344_9892455;chr3L_9892826_9893184 5.26 NA NA 0.00 NA NA 11.11 NA 0.00 NA NA 10.53 NA NA NA 5.56 NA NA 14.29 21.43 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 4.55 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 5.26 NA NA NA NA NA NA NA NA NA K jcn_only_AA MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17395228_17397622 chr2R_17395228_17397610 chr2R_17395018_17395227;chr2R_17397623_17397706 6.02 7.14 2.44 13.95 6.90 14.63 3.92 5.26 5.95 8.57 3.45 8.33 NA 9.52 11.11 NA 11.43 2.70 NA 6.49 3.85 3.87 8.26 3.68 8.99 17.86 4.35 3.49 2.47 1.52 16.13 10.42 4.94 5.36 3.95 13.75 7.87 5.98 6.06 4.71 18.18 8.70 0.00 6.76 11.32 6.94 4.08 11.54 6.35 4.30 6.10 0.00 2.94 3.90 7.14 2.47 4.96 5.88 K jcn_only_AA CG17218 chr2L + chr2L_12173131_12173213 chr2L_12173131_12173208 chr2L_12172984_12173130;chr2L_12173214_12174090 100.00 100.00 100.00 100.00 NA 95.65 100.00 100.00 100.00 100.00 NA 98.21 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 98.59 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 98.11 100.00 100.00 NA 100.00 98.04 100.00 98.25 100.00 100.00 100.00 100.00 100.00 97.62 100.00 K alternative_donor Mct1 chrX + chrX_2089096_2092664;chrX_2088826_2092664 chrX_2089073_2092664 chrX_2092665_2092972;chrX_2088634_2088825 91.67 92.86 91.67 100.00 100.00 88.89 100.00 90.00 94.74 100.00 87.50 100.00 100.00 90.00 81.82 95.45 81.82 100.00 100.00 88.89 86.67 82.61 85.71 91.30 76.92 87.50 75.00 85.19 100.00 91.67 100.00 77.78 92.00 88.89 92.00 96.30 80.95 100.00 95.83 93.55 89.47 100.00 87.50 95.00 90.91 96.30 91.67 95.65 100.00 95.77 88.00 91.67 100.00 80.00 91.67 94.74 88.24 80.95 K intron_retention CG30187,F_chr2R_18804786_18805198,F_chr2R_18805721_18805778,I_chr2R_18820842_18820922 chr2R - chr2R_18805106_18805156 chr2R_18805105_18805106;chr2R_18805156_18805157 chr2R_18805057_18805105;chr2R_18805157_18805720 0.00 0.00 0.00 1.82 0.00 0.00 3.49 1.11 0.93 0.00 0.00 0.00 0.00 0.00 0.00 3.64 4.00 0.00 0.00 0.00 0.00 0.00 4.23 1.27 0.00 0.00 6.00 4.76 0.00 0.00 0.00 0.00 9.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11739,RI_chr3R_205772_205830,I_chr3R_207254_207600 chr3R + chr3R_205768_205830 chr3R_205767_205768;chr3R_205830_205831 chr3R_205672_205767;chr3R_205831_205930 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 2.27 0.00 1.27 0.00 0.00 1.35 0.00 14.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 2.27 1.38 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 K intron_retention Abi,RI_chr3R_9946195_9946332 chr3R - chr3R_9947835_9947999 chr3R_9947834_9947835;chr3R_9947999_9948000 chr3R_9947468_9947834;chr3R_9948000_9948101 1.94 1.82 2.60 7.14 2.90 4.71 12.24 0.00 3.64 0.00 2.78 3.82 0.00 0.00 3.57 0.00 0.00 1.41 0.00 0.43 2.50 5.32 1.65 2.60 5.77 15.94 3.85 4.30 4.71 0.00 1.00 0.00 1.33 2.68 3.61 4.59 1.85 4.60 2.47 1.94 2.73 1.38 0.00 2.44 0.00 1.68 0.00 1.03 3.91 1.11 1.94 7.41 1.15 4.76 2.60 0.00 1.15 0.00 K jcn_only_AD CG8475,I_chr2L_8193230_8193671 chr2L - chr2L_8193230_8195020 chr2L_8193230_8194501 chr2L_8193223_8193229 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.85 1.35 0.00 0.00 1.20 0.00 0.00 0.00 1.85 0.00 2.56 0.00 0.00 7.27 0.00 0.00 0.00 1.39 3.23 2.86 0.00 0.00 3.85 0.00 0.00 0.00 1.61 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CrebB-17A,I_chrX_18261213_18269281,I_chrX_18265640_18266039,I_chrX_18265640_18266060,I_chrX_18265982_18266063 chrX + chrX_18265982_18266063 chrX_18265981_18265982;chrX_18266063_18266064 chrX_18265939_18265981;chrX_18266064_18266139 100.00 100.00 NA 91.67 NA NA 92.31 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA 93.33 100.00 NA 92.59 100.00 88.89 NA 88.89 100.00 NA 100.00 NA 100.00 NA 100.00 93.33 NA 100.00 NA NA NA 94.44 NA 100.00 100.00 100.00 NA 87.50 NA 100.00 93.75 90.00 100.00 100.00 NA NA 90.00 NA NA 100.00 K intron_retention RpL6 chr3R - chr3R_27421324_27421769 chr3R_27421323_27421324;chr3R_27421769_27421770 chr3R_27421243_27421323;chr3R_27421770_27422070 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.02 0.02 0.00 0.00 0.06 0.03 0.00 0.00 0.00 0.00 0.02 0.00 0.04 0.00 0.25 0.01 0.00 0.00 0.00 0.12 0.17 0.10 0.00 0.06 0.00 0.04 0.03 0.05 0.03 0.00 0.00 0.00 0.03 0.13 0.03 0.07 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.03 0.00 0.02 0.02 0.02 0.00 0.01 0.00 K alternative_donor CG10188 chr2L - chr2L_19508266_19508416;chr2L_19508266_19508325 chr2L_19508266_19508351 chr2L_19507490_19508265;chr2L_19508417_19508726 7.14 12.50 0.00 7.14 14.29 16.67 0.00 6.25 4.35 0.00 0.00 6.25 11.11 0.00 10.00 0.00 16.67 12.50 10.00 5.00 12.50 5.26 7.14 0.00 12.50 14.29 8.33 9.09 0.00 4.35 10.00 0.00 6.67 0.00 9.09 0.00 7.14 16.67 8.33 5.26 8.33 5.00 11.11 10.00 12.50 0.00 16.67 0.00 5.56 14.29 0.00 0.00 16.67 0.00 7.69 16.67 0.00 5.00 N mutually_exclusive CG42574,I_chr3R_618802_618939,I_chr3R_621543_625413,I_chr3R_621546_625413 chr3R - chr3R_620787_622210,chr3R_622790_625413 chr3R_620787_621458,chr3R_621546_625413 chr3R_622211_622789 chr3R_621459_621545 chr3R_618940_620786;chr3R_625414_625513 50.00 NA NA NA NA NA NA NA 75.00 66.67 NA NA NA NA NA NA NA NA NA NA NA 7.14 83.33 NA NA NA 50.00 9.52 20.00 33.33 NA NA 50.00 NA NA NA 50.00 NA 50.00 85.71 NA NA NA 75.00 NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA K jcn_only_AA gish chr3R + chr3R_12100604_12100675;chr3R_12100604_12100684 chr3R_12100604_12100709 chr3R_12100535_12100603;chr3R_12100710_12100891 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 4.76 NA NA 3.70 NA NA NA NA NA NA 0.00 NA NA NA NA NA 4.55 NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 N jcn_only_AA JhI-26,I_chr2R_12177114_12177266 chr2R + chr2R_12178257_12178432;chr2R_12178257_12178308 chr2R_12178257_12178348 chr2R_12177457_12178256;chr2R_12178433_12178520 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA MP1,RI_chr3R_134150_134311 chr3R + chr3R_134150_134341 chr3R_134150_134311 chr3R_134050_134149;chr3R_134342_134411 7.43 5.43 5.06 24.00 7.81 5.77 10.53 9.20 4.32 6.45 16.00 10.08 15.79 7.55 7.89 8.99 7.55 3.70 9.09 6.33 11.48 1.27 5.13 3.05 10.71 31.82 7.55 4.44 9.78 9.88 1.96 3.85 4.20 4.69 18.39 14.55 1.56 4.72 6.73 3.05 25.00 8.82 9.09 2.96 12.50 7.43 4.12 6.77 5.62 9.01 8.67 6.17 4.60 14.74 11.29 6.30 2.87 3.33 K alternative_donor CG9063 chr3L - chr3L_22255797_22255857 chr3L_22255797_22255853 chr3L_22253724_22255796;chr3L_22255858_22256037 71.43 56.25 90.00 80.95 NA NA 68.42 68.42 72.73 45.45 60.00 74.07 88.89 81.82 78.57 76.92 NA 66.67 55.56 58.62 63.64 64.00 70.97 77.78 66.67 76.92 62.50 65.00 72.73 57.89 71.43 72.73 64.29 64.71 64.71 62.50 82.35 76.19 65.00 76.32 69.23 70.83 81.82 77.78 80.00 91.67 90.91 73.08 71.43 NA 62.50 90.91 NA 77.78 69.23 NA NA 72.22 K mutually_exclusive Ate1 chr2R - chr2R_16143315_16143587,chr2R_16143741_16143940 chr2R_16143315_16143390,chr2R_16143541_16143940 chr2R_16143588_16143740 chr2R_16143391_16143540 chr2R_16143133_16143314;chr2R_16143941_16144113 57.69 53.70 63.16 71.60 60.00 60.00 81.72 61.84 59.38 52.94 62.22 61.90 52.17 53.66 59.02 51.52 59.52 64.44 59.26 57.58 53.06 54.29 48.31 50.00 57.69 57.89 58.67 52.08 59.70 53.97 55.36 46.94 52.05 58.54 56.10 76.27 53.12 60.71 57.14 49.47 52.63 59.78 62.79 52.05 53.23 45.21 64.71 41.38 63.95 65.48 53.25 62.22 58.33 56.00 63.16 56.52 61.90 45.76 K intron_retention Rcd1 chr2R - chr2R_10037324_10037730 chr2R_10037323_10037324;chr2R_10037730_10037731 chr2R_10036739_10037323;chr2R_10037731_10037959 16.13 11.76 15.79 2.60 6.52 17.24 12.28 15.69 14.63 30.77 19.35 43.40 13.95 16.67 17.07 14.04 16.13 7.69 20.59 13.64 16.00 17.65 17.39 17.07 24.00 17.95 12.20 12.50 25.00 16.00 10.00 13.79 28.00 14.81 15.15 21.88 16.28 16.67 20.51 26.00 31.58 10.29 15.38 14.71 26.32 26.09 16.67 33.33 14.29 10.20 16.67 13.04 22.22 14.29 10.87 21.43 9.26 25.00 K alternative_donor RpL24,I_chr2L_13394941_13395015 chr2L - chr2L_13394941_13395055 chr2L_13394941_13395015 chr2L_13394865_13394940;chr2L_13395056_13395065 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.10 0.00 0.09 0.00 0.09 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.10 0.00 0.60 0.38 0.72 0.00 0.65 0.45 0.00 0.38 0.65 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.10 0.47 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.37 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 K jcn_only_AD skpA chrX + chrX_550433_551131;chrX_550498_551131;chrX_550638_551131;chrX_550774_551131;chrX_550523_551131;chrX_550654_551131 chrX_550818_551131 chrX_551132_551937;chrX_550426_550432 3.21 3.83 3.95 3.21 3.29 3.60 4.41 2.48 6.96 0.81 4.76 3.97 1.64 3.42 5.73 3.60 2.19 3.28 3.41 5.17 2.16 1.69 2.16 2.75 0.92 2.69 0.00 1.20 0.57 0.68 7.10 2.46 2.81 4.09 1.11 0.81 1.66 3.16 3.35 1.13 0.00 6.01 6.78 5.00 3.70 2.55 3.55 0.00 7.22 3.26 2.96 2.67 3.68 3.54 3.98 3.62 2.53 0.88 K intron_retention Dystrophin chr3R + chr3R_15419821_15420221 chr3R_15419820_15419821;chr3R_15420221_15420222 chr3R_15419518_15419820;chr3R_15420222_15420680 47.06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 47.06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG4449,RI_chr3R_19076263_19076888 chr3R - chr3R_19076260_19076321 chr3R_19076263_19076321 chr3R_19076322_19076824;chr3R_19076163_19076259 69.23 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 69.23 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG17549,I_chr2L_19387937_19387993,I_chr2L_19388570_19389922 chr2L - chr2L_19387937_19388039 chr2L_19387936_19387937;chr2L_19388039_19388040 chr2L_19387922_19387936;chr2L_19388040_19388093 16.67 18.52 22.22 12.00 18.75 13.04 18.92 31.82 25.00 25.64 38.89 13.95 22.22 30.00 20.00 12.50 38.89 22.73 12.00 10.00 36.84 7.96 12.50 21.95 15.38 20.00 12.50 12.50 32.35 24.32 27.27 18.18 14.04 16.67 9.52 28.57 25.00 15.38 16.28 18.87 6.45 12.50 26.67 37.14 16.07 16.67 11.67 15.15 16.67 4.44 27.50 27.78 6.90 8.33 10.34 12.00 10.71 5.71 K jcn_only_AA TMS1 chr3L + chr3L_16408057_16408120 chr3L_16408057_16408101 chr3L_16407921_16408056;chr3L_16408121_16408488 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.16 0.57 0.51 0.30 0.00 0.36 0.34 0.51 0.00 0.00 0.00 0.53 0.24 0.93 0.21 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.36 0.23 0.49 0.33 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.21 0.19 0.39 0.00 0.00 0.25 0.25 0.00 0.00 K jcn_only_AA Dsp1,I_chrX_16228447_16229355,I_chrX_16231287_16231413 chrX + chrX_16228447_16230320;chrX_16228447_16230299 chrX_16228447_16230323 chrX_16228347_16228446;chrX_16230324_16230776 10.00 10.29 17.82 12.21 7.69 8.89 6.56 13.92 13.12 12.90 13.04 8.76 12.22 8.57 4.35 4.07 6.49 10.89 15.93 7.88 10.00 4.49 4.88 11.96 5.88 6.76 4.21 8.70 5.36 13.89 11.70 6.98 9.26 9.74 6.35 10.59 13.04 17.24 13.40 14.75 12.50 10.71 4.72 10.39 15.62 8.22 10.29 11.59 10.05 7.06 16.03 8.54 15.69 8.33 6.45 7.14 8.45 17.02 K intron_retention PR2,I_chr2R_9032197_9036175 chr2R - chr2R_9035960_9036175 chr2R_9035959_9035960;chr2R_9036175_9036176 chr2R_9033763_9035959;chr2R_9036176_9036275 47.06 NA NA 47.06 NA NA 69.23 NA NA NA NA NA NA NA NA 50.00 NA NA NA 30.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA K intron_retention CG2918,I_chrX_2168373_2168701,I_chrX_2168373_2168770,I_chrX_2168373_2168893 chrX - chrX_2168373_2168907 chrX_2168372_2168373;chrX_2168907_2168908 chrX_2168273_2168372;chrX_2168908_2168993 0.00 0.72 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 1.63 0.00 0.00 0.00 0.00 0.00 0.00 2.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CkIIbeta,I_chrX_11686847_11687475,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11686948_11687475 chrX_11686947_11686948;chrX_11687475_11687476 chrX_11686929_11686947;chrX_11687476_11687551 71.43 NA NA 71.43 NA NA NA 90.91 75.00 NA NA NA NA NA NA 90.91 NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA 69.23 NA NA NA NA NA NA 71.43 NA NA NA NA NA NA NA NA NA K intron_retention SMSr chr3L - chr3L_7368447_7368504 chr3L_7368446_7368447;chr3L_7368504_7368505 chr3L_7368362_7368446;chr3L_7368505_7368771 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 K intron_retention Bruce chr3R - chr3R_6145102_6145158 chr3R_6145101_6145102;chr3R_6145158_6145159 chr3R_6144984_6145101;chr3R_6145159_6145382 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 3.23 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AD Ranbp16,I_chrX_15826655_15827277 chrX - chrX_15821870_15823373 chrX_15821870_15822706 chrX_15821732_15821869 0.00 7.14 3.03 0.00 0.00 0.00 0.00 0.00 2.27 NA NA 0.00 0.00 3.57 0.00 5.00 0.00 NA 0.00 3.17 NA NA 0.00 3.03 0.00 0.00 0.00 NA NA 4.76 4.44 3.45 NA 0.00 NA NA 6.45 0.00 0.00 0.00 19.05 1.54 0.00 0.00 0.00 4.35 0.00 0.00 1.59 NA 9.68 0.00 NA NA 2.56 0.00 0.00 0.00 K jcn_only_AD CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806824_22809684;chr3R_22806425_22809684 chr3R_22806314_22809684 chr3R_22809685_22809939;chr3R_22806256_22806313 2.59 NA NA 0.00 NA 0.00 5.00 3.92 0.00 NA NA 5.88 2.70 NA NA 0.00 NA 2.56 0.00 2.82 NA NA 0.00 NA NA NA NA NA NA 3.57 NA 0.00 2.63 5.00 NA NA NA NA NA NA NA 3.33 NA NA NA 0.00 NA 5.00 2.70 NA 0.00 NA NA NA NA NA 0.00 NA K jcn_only_AA CG17385,I_chr2R_10298790_10298843 chr2R - chr2R_10297921_10298229 chr2R_10297924_10298229 chr2R_10298230_10298789;chr2R_10297716_10297920 98.77 97.97 99.24 98.57 96.08 98.33 100.00 99.37 98.83 98.95 99.14 98.32 100.00 99.16 97.06 98.75 99.14 98.47 97.74 99.34 100.00 98.96 99.07 98.31 98.98 98.55 98.77 98.17 98.97 97.00 100.00 98.52 99.33 98.90 100.00 97.27 98.77 97.56 99.04 99.13 98.50 99.19 98.32 98.63 98.84 99.49 98.51 98.46 97.81 95.45 97.64 100.00 98.15 100.00 100.00 97.87 99.12 97.73 K intron_retention SF1,I_chr3R_13367524_13367576,I_chr3R_13367524_13367588,I_chr3R_13367524_13367760 chr3R + chr3R_13367524_13369221 chr3R_13367523_13367524;chr3R_13369221_13369222 chr3R_13367424_13367523;chr3R_13369222_13369374 64.17 70.59 66.67 NA 75.00 NA 64.71 87.50 81.25 100.00 NA 77.27 69.23 80.00 61.54 71.43 88.89 NA 100.00 65.38 NA 51.72 65.00 44.44 NA NA 44.44 NA 50.00 41.18 43.75 45.00 38.46 80.95 71.43 41.18 55.00 40.00 61.11 60.00 40.00 82.35 NA 61.11 100.00 63.64 47.83 61.54 95.65 40.00 48.48 41.67 69.23 47.37 77.78 61.11 78.57 75.00 K intron_retention I_chrX_3345099_3416710,CG10803,I_chrX_3380218_3380345 chrX + chrX_3381821_3381873 chrX_3381820_3381821;chrX_3381873_3381874 chrX_3381630_3381820;chrX_3381874_3382055 1.56 NA 0.00 33.33 NA NA 10.53 0.00 14.81 NA 0.00 0.00 NA 0.00 21.43 0.00 NA NA 6.67 8.00 NA NA 7.41 NA NA 12.50 20.00 NA NA 0.00 NA NA 0.00 0.00 0.00 6.67 0.00 NA NA 0.00 NA 3.12 5.56 NA NA 0.00 NA 11.54 7.32 NA NA NA NA NA 0.00 NA NA NA K intron_retention CG5037 chr2L + chr2L_10331682_10331746 chr2L_10331681_10331682;chr2L_10331746_10331747 chr2L_10331500_10331681;chr2L_10331747_10331930 1.83 2.00 0.00 0.00 0.00 0.00 4.65 0.00 1.83 0.00 7.32 5.88 4.00 0.00 0.00 7.69 0.00 3.23 3.92 6.06 7.41 4.44 0.00 5.17 0.00 0.00 3.57 0.00 7.84 0.00 5.26 0.00 5.41 1.43 0.00 12.24 0.00 0.00 3.77 4.04 2.13 1.08 4.44 0.00 4.48 0.00 0.00 3.33 2.70 0.00 1.39 2.94 3.85 0.00 2.00 3.70 0.00 0.00 K alternative_acceptor Pect,I_chr2L_13207997_13208109,E_chr2L_13208285_13210076 chr2L + chr2L_13208778_13209435;chr2L_13208778_13209501;chr2L_13208778_13209471 chr2L_13208778_13209492 chr2L_13208665_13208777;chr2L_13209502_13209599 6.99 5.56 6.47 2.84 9.20 6.96 2.03 4.80 6.13 5.33 3.48 7.89 40.50 9.02 7.09 5.77 8.16 6.73 5.51 8.84 5.10 16.82 8.13 9.43 8.60 4.20 6.28 14.89 5.56 11.48 5.88 7.89 11.65 5.08 12.71 2.97 9.16 7.02 6.41 5.23 7.78 6.80 6.67 6.99 7.23 10.85 6.45 10.53 3.46 8.11 8.50 7.09 2.50 9.73 9.80 8.96 4.79 4.63 K jcn_only_AD CG12393,CG9135 chr2L + chr2L_6048627_6048693;chr2L_6048631_6048693 chr2L_6048635_6048693 chr2L_6048694_6048702;chr2L_6048512_6048626 4.35 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 4.35 NA 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention raps chr3R + chr3R_23408608_23408649 chr3R_23408607_23408608;chr3R_23408649_23408650 chr3R_23408527_23408607;chr3R_23408650_23410096 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 95.65 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA l(2)k14710 chr2R - chr2R_2097980_2098051 chr2R_2097989_2098051 chr2R_2098052_2098165;chr2R_2097914_2097979 100.00 100.00 100.00 96.43 100.00 97.30 100.00 96.23 97.83 NA 100.00 100.00 100.00 100.00 94.59 98.08 100.00 100.00 100.00 98.18 100.00 NA 95.74 100.00 100.00 100.00 100.00 95.65 95.24 100.00 100.00 NA 96.55 100.00 95.83 100.00 100.00 100.00 100.00 96.88 NA 98.28 NA 100.00 96.97 100.00 96.97 NA 100.00 100.00 97.50 NA 100.00 100.00 97.56 100.00 100.00 95.00 K intron_retention I_chr3L_3223943_3224313,CG11505 chr3L + chr3L_3227706_3227774 chr3L_3227705_3227706;chr3L_3227774_3227775 chr3L_3226877_3227705;chr3L_3227775_3228024 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG3164,I_chr2L_125267_126140,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_126228_128799 chr2L_126227_126228;chr2L_128799_128800 chr2L_126141_126227;chr2L_128800_128899 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.73 0.00 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 1.07 1.74 1.43 2.42 1.03 1.88 3.19 0.00 0.00 0.00 0.00 0.70 0.00 1.47 0.57 0.37 1.95 0.43 1.21 1.54 0.00 0.00 0.76 0.00 0.00 1.97 0.78 0.00 1.50 1.20 0.00 0.00 0.00 0.00 1.69 0.00 1.38 K cassette bip2,RI_chr4_481674_487126,RI_chr4_483128_487126,RI_chr4_486609_487126 chr4 - chr4_485367_487126 chr4_485367_485422;chr4_485942_487126 chr4_485423_485941 chr4_485355_485366;chr4_487127_487226 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 98.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 95.83 90.91 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention growl chr3R + chr3R_231271_231322 chr3R_231270_231271;chr3R_231322_231323 chr3R_231202_231270;chr3R_231323_231533 0.14 0.13 0.00 0.26 0.00 0.00 0.24 0.00 0.33 0.00 0.38 0.27 0.00 0.00 0.34 0.00 0.23 0.00 0.00 0.21 0.00 0.00 0.41 0.11 0.54 0.18 1.65 1.38 0.80 0.00 0.00 0.00 0.35 0.00 0.15 0.84 0.41 0.00 0.16 0.00 0.91 0.35 0.00 0.00 0.25 0.16 0.00 0.37 0.29 0.14 0.21 0.00 0.21 0.00 0.00 0.00 0.14 0.77 K intron_retention CG14995,I_chr3L_4095875_4097205,I_chr3L_4096047_4096903 chr3L - chr3L_4096068_4096903 chr3L_4096067_4096068;chr3L_4096903_4096904 chr3L_4095972_4096067;chr3L_4096904_4096978 13.12 18.75 28.57 NA 23.08 NA NA 9.52 13.33 25.00 NA 12.50 NA NA 16.67 NA NA NA NA 11.11 NA 20.75 12.90 0.00 NA NA 10.53 25.00 12.90 18.18 30.77 20.00 20.00 11.76 12.50 9.09 9.09 17.24 9.68 10.81 NA 20.00 NA 20.00 15.38 3.45 9.52 0.00 26.32 6.90 16.22 12.50 10.00 9.52 14.29 15.00 6.25 15.00 K intron_retention lolal,I_chr2R_14043671_14043736,I_chr2R_14043671_14043740,I_chr2R_14043671_14043901,RI_chr2R_14043671_14044082,I_chr2R_14043671_14044191,I_chr2R_14043671_14044461,I_chr2R_14043671_14045289,I_chr2R_14043671_14045344 chr2R - chr2R_14043671_14045189 chr2R_14043670_14043671;chr2R_14045189_14045190 chr2R_14043571_14043670;chr2R_14045190_14045252 63.40 NA NA 70.00 NA NA NA NA 60.00 NA NA 60.00 NA NA NA 45.45 87.50 NA NA 62.50 NA 66.67 NA NA NA NA NA NA NA NA NA NA 45.45 73.33 NA 87.50 NA NA NA 64.29 NA 71.43 NA NA NA NA NA 35.00 43.75 NA NA NA NA NA NA NA NA NA K intron_retention babo chr2R + chr2R_4842357_4843217 chr2R_4842356_4842357;chr2R_4843217_4843218 chr2R_4842239_4842356;chr2R_4843218_4843257 50.00 54.55 75.00 41.18 63.64 NA 80.95 44.44 63.64 NA 46.67 52.38 NA 38.46 50.00 57.14 100.00 NA 50.00 26.39 35.29 NA 48.00 45.45 54.55 NA 52.94 NA NA 58.33 50.00 NA NA 40.00 NA 30.77 33.33 15.38 21.05 31.25 NA 51.85 53.85 35.29 NA NA NA NA 50.00 NA 35.48 35.71 NA NA 66.67 NA NA NA K intron_retention CG18659,E_chr2R_5011363_5019110,RI_chr2R_5013572_5014531,I_chr2R_5016147_5016997 chr2R - chr2R_5012726_5013055 chr2R_5012725_5012726;chr2R_5013055_5013056 chr2R_5012249_5012725;chr2R_5013056_5013571 19.33 19.72 20.00 26.42 25.49 23.40 20.00 30.23 19.64 8.47 20.00 9.89 21.43 18.75 21.82 27.59 19.51 21.21 16.67 14.78 26.67 23.37 14.19 14.29 10.71 15.62 26.67 29.17 9.09 13.86 24.39 16.22 12.90 25.00 15.07 18.75 11.26 6.87 19.33 18.75 15.79 20.00 27.27 13.98 15.00 16.88 20.78 20.69 25.33 16.13 19.35 7.14 17.65 19.05 23.40 10.20 20.22 18.18 K intron_retention B52,E_chr3R_9488770_9491174 chr3R + chr3R_9487155_9487423 chr3R_9487154_9487155;chr3R_9487423_9487424 chr3R_9487148_9487154;chr3R_9487424_9487581 1.97 2.30 1.82 2.70 0.00 1.14 2.42 1.99 2.69 3.51 0.00 2.73 1.16 2.73 0.85 2.46 2.13 1.11 2.53 2.44 1.56 2.14 2.27 2.82 1.17 1.18 1.03 1.33 5.00 3.08 0.69 2.55 1.75 1.42 1.08 2.14 2.21 2.53 1.62 1.62 2.58 2.37 0.66 1.23 2.73 1.74 2.08 2.86 2.50 1.61 1.35 1.97 1.49 2.40 0.82 1.12 1.35 1.55 K intron_retention Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21129083_21131230 chr2L_21129082_21129083;chr2L_21131230_21131231 chr2L_21128779_21129082;chr2L_21131231_21131266 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 7.69 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CEI_chrX_17177009_17196871,CG5445,I_chrX_17196752_17196871,RI_chrX_17196772_17196871,I_chrX_17196820_17196875,I_chrX_17198393_17198730 chrX + chrX_17196681_17196871;chrX_17196820_17196871;chrX_17196541_17196871;chrX_17196617_17196871 chrX_17196546_17196871 chrX_17196872_17196971;chrX_17196536_17196540 0.00 0.00 0.00 NA NA NA 0.00 15.15 1.89 NA NA 0.00 NA NA NA 3.85 NA 0.00 3.12 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 3.45 0.00 0.00 NA 0.00 3.12 2.22 2.78 0.00 0.00 0.00 0.00 0.00 NA 0.00 4.55 0.00 K jcn_only_AD sec23,I_chr3R_1474873_1475080,I_chr3R_1474899_1475080,I_chr3R_1474960_1475051,I_chr3R_1477727_1478102 chr3R + chr3R_1474960_1475080;chr3R_1474873_1475080 chr3R_1474899_1475080 chr3R_1475081_1475151;chr3R_1474860_1474872 0.00 1.02 0.00 0.00 0.00 0.00 0.76 0.00 0.56 5.56 0.00 0.00 0.97 1.19 0.00 0.00 1.43 0.00 0.00 1.86 1.56 1.19 0.65 0.00 0.00 0.00 0.00 0.90 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.85 0.00 0.00 3.45 1.12 1.28 0.83 0.00 0.00 0.00 3.23 0.52 0.67 1.20 1.06 0.00 0.00 1.83 0.00 0.00 1.96 K alternative_acceptor Doa,I_chr3R_24715823_24718923,I_chr3R_24747391_24747896 chr3R + chr3R_24713971_24714030 chr3R_24713971_24714027 chr3R_24713819_24713970;chr3R_24714031_24714256 54.17 46.43 54.05 59.52 63.64 65.00 50.00 59.09 56.86 58.33 64.71 62.22 60.00 58.33 51.43 43.40 59.26 50.00 51.72 60.87 60.87 31.58 50.00 54.29 50.00 75.86 72.09 50.00 65.00 61.90 50.00 52.63 45.83 70.00 62.50 75.00 53.49 42.11 52.63 48.39 54.55 64.29 60.87 52.78 44.44 46.15 36.67 54.55 50.00 63.64 46.34 54.17 41.18 38.89 45.00 41.67 60.00 64.29 K intron_retention Xrp1,I_chr3R_14741648_14750799,I_chr3R_14750298_14750799 chr3R + chr3R_14749868_14750799 chr3R_14749867_14749868;chr3R_14750799_14750800 chr3R_14749792_14749867;chr3R_14750800_14750899 7.41 6.06 7.41 15.00 0.00 4.76 15.19 8.00 12.31 0.00 14.29 12.00 21.05 12.90 0.00 12.82 0.00 7.14 11.43 8.57 9.09 3.80 8.86 6.82 3.70 8.33 11.43 14.71 0.00 13.16 0.00 0.00 0.00 5.13 21.21 9.84 0.00 8.70 0.00 7.27 16.67 12.50 0.00 5.26 0.00 8.33 0.00 17.39 13.51 7.41 17.07 6.90 0.00 13.64 16.00 6.67 0.00 0.00 K intron_retention SdhA,I_chr2R_15283283_15283411,I_chr2R_15283319_15283369 chr2R - chr2R_15283283_15283369 chr2R_15283282_15283283;chr2R_15283369_15283370 chr2R_15283219_15283282;chr2R_15283370_15283469 29.17 23.64 15.79 13.64 25.00 23.08 45.00 31.15 24.10 45.45 20.69 26.09 23.08 29.41 22.73 18.18 20.45 22.50 17.78 31.25 28.57 35.71 54.84 58.06 56.25 46.88 36.00 50.00 65.38 26.92 25.00 43.48 23.08 31.82 24.00 70.00 28.57 37.04 24.59 35.82 69.23 27.14 25.64 22.92 13.64 46.43 28.57 29.17 24.62 33.33 40.48 36.00 33.33 27.59 41.18 42.31 31.43 31.82 K intron_retention CG14446 chrX + chrX_6124701_6124765 chrX_6124700_6124701;chrX_6124765_6124766 chrX_6124268_6124700;chrX_6124766_6125019 0.00 0.00 0.00 0.00 0.00 0.00 6.06 0.00 3.45 0.00 NA 3.85 0.00 0.00 0.00 6.67 0.00 0.00 0.00 5.26 NA 13.11 6.06 0.00 13.04 5.56 0.00 6.67 5.00 0.00 0.00 NA NA 5.71 3.85 0.00 0.00 0.00 0.00 2.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA K alternative_acceptor cl chr2L + chr2L_5520236_5520304;chr2L_5520236_5520301 chr2L_5520236_5520286 chr2L_5520216_5520235;chr2L_5520305_5520545 65.38 NA NA 74.36 NA 52.05 52.07 73.87 82.45 NA NA NA 72.73 NA 50.54 NA 72.97 71.19 57.45 NA NA 74.36 NA NA NA 72.62 NA NA NA NA 60.58 65.38 NA NA NA NA NA NA NA 54.17 NA 46.29 NA NA 45.95 70.45 NA 74.29 74.83 36.00 46.15 66.67 NA 50.00 52.75 NA 68.42 55.41 K intron_retention CG30421 chr2R + chr2R_20632363_20640193 chr2R_20632362_20632363;chr2R_20640193_20640194 chr2R_20631351_20632362;chr2R_20640194_20640426 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 2.13 0.00 0.00 0.00 0.00 0.00 8.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG14408,I_chrX_14725709_14725773 chrX - chrX_14725700_14725773 chrX_14725709_14725773 chrX_14725774_14725873;chrX_14725637_14725699 4.35 10.53 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 9.52 3.45 15.38 0.00 0.00 0.00 NA NA 6.25 10.81 0.00 8.33 5.56 7.41 NA NA 5.00 0.00 5.56 4.76 8.00 6.67 6.67 0.00 0.00 14.29 7.14 7.14 0.00 10.00 NA 0.00 7.14 4.35 0.00 5.56 NA 0.00 6.25 0.00 0.00 0.00 6.25 6.67 7.41 NA 0.00 NA K intron_retention Src42A,RI_chr2R_1897007_1897302 chr2R + chr2R_1896861_1896927 chr2R_1896860_1896861;chr2R_1896927_1896928 chr2R_1896776_1896860;chr2R_1896928_1897006 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG6954,I_chr3R_18492755_18493701,I_chr3R_18492801_18502630,I_chr3R_18493099_18493701 chr3R + chr3R_18492761_18493701;chr3R_18492765_18493701;chr3R_18492801_18493701 chr3R_18492755_18493701 chr3R_18493702_18493764;chr3R_18492703_18492754 14.29 NA 25.00 NA NA NA NA 12.50 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA 14.29 NA NA NA 16.67 NA NA NA N jcn_only_AA noncoding_4261 chr2L + chr2L_21930695_21930858 chr2L_21930695_21930816 chr2L_21930327_21930694;chr2L_21930859_21930947 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 89.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor cryptocephal,noncoding_4181,I_chr2L_21311307_21311752,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21311033_21311752;chr2L_21311532_21311752;chr2L_21311215_21311752 chr2L_21311307_21311752 chr2L_21311753_21311852;chr2L_21310948_21311032 0.50 0.50 0.33 0.17 1.04 0.40 0.23 0.00 0.18 0.00 0.56 0.32 0.00 0.34 0.16 1.00 0.00 0.00 0.34 0.00 0.72 0.78 1.28 0.30 0.66 0.00 0.50 2.03 4.59 0.94 0.36 1.35 1.74 0.21 0.62 1.49 1.30 0.84 0.76 1.61 0.35 0.18 0.17 1.46 2.32 1.24 0.75 1.19 0.16 0.60 0.45 1.59 0.56 0.43 0.24 2.01 0.59 0.26 K mutually_exclusive Dystrophin chr3R + chr3R_15418846_15420090,chr3R_15420121_15420221 chr3R_15418846_15419517,chr3R_15419821_15420221 chr3R_15420091_15420120 chr3R_15419518_15419820 chr3R_15418545_15418845;chr3R_15420222_15420680 100.00 NA 100.00 NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA 86.67 NA NA NA 82.61 NA NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 NA 80.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 NA 85.71 NA 100.00 100.00 88.89 100.00 100.00 100.00 85.71 NA NA 100.00 100.00 NA 85.71 83.33 100.00 K intron_retention wnd chr3L - chr3L_19619045_19619111 chr3L_19619044_19619045;chr3L_19619111_19619112 chr3L_19617558_19619044;chr3L_19619112_19620010 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 2.50 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Shawn_Tyler,MKP-4 chrX + chrX_19517748_19517812 chrX_19517747_19517748;chrX_19517812_19517813 chrX_19517648_19517747;chrX_19517813_19518495 0.00 4.88 0.00 0.00 0.00 0.00 0.00 0.00 4.62 8.70 0.00 5.56 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 11.54 3.64 1.89 5.71 0.00 4.35 0.00 12.00 0.00 10.53 0.00 13.04 0.00 6.25 0.00 1.47 0.00 0.00 2.78 0.00 4.08 NA 0.00 0.00 0.00 4.35 NA 2.27 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K jcn_only_AD CG4239,I_chrX_16279725_16280317 chrX + chrX_16279721_16281003;chrX_16279372_16281003 chrX_16279725_16281003 chrX_16281004_16281322;chrX_16279353_16279371 18.87 5.13 3.70 6.15 20.69 20.00 23.53 13.04 28.99 NA 63.64 12.50 27.27 13.04 22.86 20.31 8.70 27.27 22.86 22.54 55.56 1.89 15.87 8.51 17.14 21.88 8.70 22.50 25.00 25.00 NA 28.00 26.09 6.45 12.12 11.54 22.22 16.36 17.81 11.24 NA 20.78 20.00 17.65 NA 15.62 9.09 NA 15.65 6.82 18.87 12.50 15.38 30.43 27.78 22.22 30.00 NA K intron_retention Spt6 chrX + chrX_6162225_6162799 chrX_6162224_6162225;chrX_6162799_6162800 chrX_6162140_6162224;chrX_6162800_6163005 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 1.92 0.00 2.04 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 2.86 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG18769,I_chr3L_6544367_6555421 chr3L + chr3L_6583936_6583993 chr3L_6583935_6583936;chr3L_6583993_6583994 chr3L_6583707_6583935;chr3L_6583994_6584099 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.51 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Vha55 chr3R - chr3R_8450627_8450687 chr3R_8450626_8450627;chr3R_8450687_8450688 chr3R_8449481_8450626;chr3R_8450688_8451949 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.29 0.34 0.00 0.00 0.00 0.00 0.30 0.35 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.28 0.33 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.44 K intron_retention Xe7,RI_chr3R_1491850_1491919,CRI_chr3R_1493111_1493414 chr3R - chr3R_1491980_1492051 chr3R_1491979_1491980;chr3R_1492051_1492052 chr3R_1491920_1491979;chr3R_1492052_1492683 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 3.92 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Traf-like,I_chrX_16309163_16309641,I_chrX_16309212_16309689,I_chrX_16309561_16309641,I_chrX_16309561_16309689,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16309561_16309689;chrX_16309619_16309689 chrX_16309163_16309689 chrX_16309690_16309741;chrX_16309112_16309162 0.00 0.00 0.00 1.85 0.00 0.00 0.00 1.02 0.74 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 2.56 1.92 1.49 6.25 0.00 0.00 NA 0.00 0.00 1.19 3.70 11.54 0.00 0.00 2.50 1.56 0.00 0.00 1.69 0.00 1.00 0.00 0.00 NA 0.00 2.78 4.17 0.00 0.00 2.56 3.28 0.00 0.00 0.00 0.00 0.00 NA K mutually_exclusive CG32638,I_chrX_13017877_13022283 chrX - chrX_13017721_13020100,chrX_13020248_13022283 chrX_13017721_13017806,chrX_13017877_13022283 chrX_13020101_13020247 chrX_13017807_13017876 chrX_13017225_13017720;chrX_13022284_13022383 14.29 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 33.33 K alternative_acceptor Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8462783_8463253 chr3L_8462783_8463187 chr3L_8462665_8462782;chr3L_8463254_8463287 57.78 NA NA 66.67 NA NA NA 66.67 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA NA NA 55.56 NA NA NA NA NA 50.00 NA 60.00 NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA K intron_retention CG15618 chrX - chrX_19758696_19758760 chrX_19758695_19758696;chrX_19758760_19758761 chrX_19757859_19758695;chrX_19758761_19759042 28.57 NA NA NA NA NA NA NA 19.05 NA NA 33.33 NA NA NA NA NA NA NA 26.09 NA 50.00 26.32 38.46 NA NA NA 45.45 NA 11.76 28.57 NA NA NA NA NA 28.57 19.05 33.33 35.71 NA 25.00 NA NA NA NA NA NA 33.33 NA NA NA NA NA 25.00 NA NA NA K intron_retention 4EHP,I_chr3R_19890053_19927017,noncoding_18757,RI_chr3R_19927769_19928262 chr3R - chr3R_19893787_19927017 chr3R_19893786_19893787;chr3R_19927017_19927018 chr3R_19893401_19893786;chr3R_19927018_19927117 0.00 0.00 0.00 0.00 0.00 0.00 1.72 3.19 3.23 2.94 2.04 1.79 10.20 2.86 3.51 4.48 0.00 0.00 5.56 1.57 0.00 0.00 0.00 2.53 0.00 0.00 0.00 10.00 0.00 0.00 1.47 0.00 5.41 1.02 1.79 3.08 0.00 0.00 0.00 0.98 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 1.69 0.00 2.86 2.17 0.00 0.00 3.95 0.00 0.00 0.00 K jcn_only_AA CG7376 chr3L + chr3L_6167546_6167602 chr3L_6167546_6167597 chr3L_6167350_6167545;chr3L_6167603_6168754 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention SWAP,RI_chrX_938935_938985,noncoding_21279,I_chrX_941459_982652,CG42259 chrX + chrX_940594_940668 chrX_940593_940594;chrX_940668_940669 chrX_940506_940593;chrX_940669_940972 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 3.28 0.00 0.00 0.00 NA 3.12 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention wapl,Cyp4d1 chrX - chrX_2045186_2045304 chrX_2045185_2045186;chrX_2045304_2045305 chrX_2044061_2045185;chrX_2045305_2045495 3.85 0.00 0.00 5.26 0.00 4.17 7.41 10.81 10.14 9.52 0.00 4.55 7.14 8.33 9.38 4.76 13.33 5.71 3.23 12.50 8.00 0.00 3.23 2.70 0.00 3.85 9.09 9.52 0.00 0.00 6.25 6.06 1.82 5.08 0.00 0.00 0.00 0.00 0.00 6.45 2.17 7.14 0.00 7.69 0.00 1.47 3.03 4.35 8.51 0.00 9.76 3.85 0.00 0.00 9.09 2.44 3.45 0.00 K jcn_only_AD CG8026,I_chr2R_5074640_5074701 chr2R - chr2R_5074640_5074800;chr2R_5074640_5074701 chr2R_5074640_5075624 chr2R_5074540_5074639 95.86 92.22 98.28 95.08 98.11 96.36 89.13 92.86 91.59 87.30 93.02 85.05 96.55 100.00 97.14 88.68 94.74 96.08 97.50 90.16 95.92 83.87 94.74 93.44 96.59 96.67 95.04 98.18 93.75 98.86 94.44 91.23 97.73 96.10 98.44 94.29 95.60 95.86 97.70 95.15 92.68 94.44 97.06 90.82 92.86 95.93 97.30 92.68 96.43 94.44 97.42 97.14 97.37 96.09 98.72 96.58 98.28 91.67 K intron_retention SF2 chr3R - chr3R_12167321_12167449 chr3R_12167320_12167321;chr3R_12167449_12167450 chr3R_12166951_12167320;chr3R_12167450_12167700 3.62 4.02 6.06 18.18 2.38 5.56 6.38 3.12 5.12 2.30 4.23 2.92 3.75 3.70 4.76 3.28 0.00 3.30 6.67 2.92 1.14 4.89 3.20 3.62 2.94 3.60 7.28 6.25 7.78 5.48 4.76 2.04 3.03 5.60 4.51 3.39 3.53 3.37 2.90 3.89 5.21 2.53 3.03 5.41 5.78 2.40 3.47 6.59 2.68 3.29 4.50 3.33 2.86 3.72 6.25 3.09 3.59 3.70 K alternative_donor I_chr2L_8029734_8029787,Cka,CG7429 chr2L + chr2L_8030840_8032059;chr2L_8031163_8032059;chr2L_8031036_8032059;chr2L_8031309_8032059 chr2L_8031338_8032059 chr2L_8032060_8032641;chr2L_8030749_8030839 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.81 0.46 0.00 0.00 0.00 0.00 1.47 1.32 1.55 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.97 0.00 0.00 0.98 1.22 1.25 0.00 1.30 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.92 0.76 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 4.35 K intron_retention CG1646,RI_chr3R_24638061_24638116,RI_chr3R_24638209_24638280,I_chr3R_24641816_24641874 chr3R + chr3R_24638061_24638116 chr3R_24638060_24638061;chr3R_24638116_24638117 chr3R_24638051_24638060;chr3R_24638117_24638208 92.86 100.00 81.25 95.45 NA 88.89 93.33 94.44 100.00 NA 91.67 94.74 NA 88.89 90.00 90.91 91.67 NA 87.50 100.00 NA 90.91 NA 100.00 100.00 95.65 90.91 NA 90.91 69.23 100.00 NA 85.71 92.86 100.00 96.00 100.00 100.00 100.00 92.86 NA 95.00 NA 88.89 90.91 NA 88.89 90.00 100.00 NA 85.71 100.00 NA NA 92.31 100.00 88.89 NA K cassette CG14425,Sxl,CG14425_Sxl,CEF_chrX_6984538_6992033 chrX - chrX_6982783_6992033 chrX_6982783_6985706;chrX_6986204_6992033 chrX_6985707_6986203 chrX_6982611_6982782;chrX_6992034_6992068 100.00 100.00 100.00 98.28 100.00 100.00 98.25 100.00 98.67 100.00 94.74 100.00 100.00 100.00 96.67 100.00 100.00 96.67 100.00 100.00 100.00 100.00 97.56 96.55 100.00 96.30 100.00 100.00 95.00 100.00 100.00 93.75 100.00 98.57 96.67 100.00 100.00 100.00 100.00 97.83 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_last_exon Pka-R2,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5884127_5885208 chr2R_5884726_5885208,chr2R_5885057_5885208 chr2R_5881348_5884126 chr2R_5884467_5884725 chr2R_5885209_5885394 2.86 3.85 0.00 2.70 5.00 0.00 0.00 2.90 0.00 5.26 4.76 3.64 4.35 3.23 0.00 1.32 0.00 7.41 0.00 1.82 3.85 5.26 3.23 0.00 7.14 0.00 4.55 7.14 0.00 4.17 0.00 5.26 0.00 1.39 3.85 5.88 4.76 0.00 0.00 2.38 0.00 1.52 3.12 2.70 11.76 2.86 0.00 4.55 2.86 4.35 4.00 0.00 0.00 6.25 0.00 0.00 0.00 4.17 K intron_retention CG4096,I_chrX_5601534_5602019 chrX + chrX_5602198_5602254 chrX_5602197_5602198;chrX_5602254_5602255 chrX_5602174_5602197;chrX_5602255_5602666 5.88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA 5.88 NA NA NA NA 5.00 NA NA NA NA NA NA NA NA N intron_retention CG1115,F_chr3R_1052705_1053045 chr3R + chr3R_1052718_1053045 chr3R_1052717_1052718;chr3R_1053045_1053046 chr3R_1051825_1052717;chr3R_1053046_1053145 38.28 30.00 NA 66.67 NA NA 33.33 47.37 39.29 NA NA 39.13 NA 40.00 NA 46.43 38.46 NA 100.00 46.15 NA NA 48.00 44.44 NA NA 50.00 100.00 NA NA NA NA NA 50.00 29.41 100.00 31.58 29.41 33.33 22.22 NA 38.10 NA 36.36 NA 40.00 31.82 NA 29.03 23.08 32.00 42.86 33.33 30.77 NA 33.33 35.48 NA N cassette JhI-21,I_chr2L_12055360_12055714 chr2L - chr2L_12054499_12055901 chr2L_12054499_12055084;chr2L_12055360_12055901 chr2L_12055085_12055359 chr2L_12054303_12054498;chr2L_12055902_12055978 100.00 100.00 100.00 95.09 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Akap200,I_chr2L_8415846_8426873,I_chr2L_8417052_8426873,I_chr2L_8420065_8426872,I_chr2L_8426446_8426873 chr2L + chr2L_8420065_8426873 chr2L_8420064_8420065;chr2L_8426873_8426874 chr2L_8419965_8420064;chr2L_8426874_8426972 11.74 11.79 17.53 6.32 12.68 13.03 10.52 8.75 13.60 6.41 7.18 13.24 9.74 14.88 12.21 15.01 13.07 10.45 12.60 13.20 10.92 22.07 16.63 7.61 10.55 12.04 10.32 11.80 11.74 10.69 13.12 4.39 12.79 14.27 13.61 9.13 16.59 11.65 12.26 14.83 7.73 11.55 13.52 11.55 2.33 4.26 2.76 21.98 11.90 3.50 9.88 14.66 6.15 3.95 13.09 5.10 4.20 6.78 K alternative_acceptor Zpr1,RI_chrX_9055207_9055334 chrX - chrX_9055207_9055334 chrX_9055221_9055334 chrX_9055335_9055434;chrX_9055107_9055206 100.00 100.00 100.00 100.00 100.00 100.00 96.55 96.97 100.00 100.00 100.00 97.56 100.00 100.00 100.00 96.67 100.00 100.00 100.00 97.92 100.00 100.00 100.00 96.30 94.12 100.00 100.00 95.24 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 97.06 100.00 100.00 94.12 94.44 100.00 95.00 100.00 100.00 100.00 100.00 96.88 100.00 96.55 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Rox8,I_chr3R_19872211_19872659,I_chr3R_19872214_19872630,I_chr3R_19872214_19872636,I_chr3R_19872214_19872838,I_chr3R_19876189_19876240 chr3R - chr3R_19872214_19873540;chr3R_19872214_19873682;chr3R_19872214_19873550 chr3R_19872214_19873834 chr3R_19872114_19872213;chr3R_19873835_19873903 2.19 NA 2.13 0.00 0.00 2.94 0.00 5.56 3.51 NA 0.00 5.66 0.00 0.00 1.85 0.00 0.00 0.00 0.00 5.17 6.06 NA 6.45 NA 7.14 2.70 0.00 NA 0.00 NA 2.38 NA 15.38 2.67 8.33 0.00 NA NA 0.00 NA NA 1.45 0.00 NA NA 13.79 NA 2.78 2.25 NA 4.76 NA 0.00 NA 2.86 NA NA 7.32 K alternative_acceptor CG2982,norpA chrX + chrX_4213537_4213602 chrX_4213537_4213598 chrX_4213526_4213536;chrX_4213603_4215778 100.00 NA 100.00 NA NA NA 90.00 NA 100.00 NA NA 100.00 100.00 NA NA 88.89 NA NA NA 92.31 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 92.31 NA NA NA NA NA NA NA 92.86 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K alternative_acceptor mub,RI_chr3L_21901021_21901163,I_chr3L_21908756_21909179 chr3L + chr3L_21901021_21907875 chr3L_21901021_21901163 chr3L_21900921_21901020;chr3L_21907876_21907932 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD I_chr2R_401246_447865,Stlk,CREI_chr2R_434560_435506 chr2R + chr2R_434486_447865 chr2R_434560_447865 chr2R_447866_447950;chr2R_434460_434485 100.00 NA NA 100.00 NA NA 92.00 96.43 100.00 NA NA 100.00 95.83 NA NA 97.62 NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA 90.91 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA 97.83 NA 100.00 NA NA NA 100.00 NA NA NA K jcn_only_AD CG14411 chrX + chrX_14726979_14727176 chrX_14726994_14727176 chrX_14727177_14730337;chrX_14726671_14726978 96.15 95.12 94.38 100.00 98.31 100.00 92.08 93.86 99.24 95.24 93.85 98.55 94.83 98.67 100.00 98.48 100.00 94.20 95.89 97.46 92.42 99.12 94.25 96.07 100.00 97.30 97.81 95.06 96.99 95.83 94.37 99.20 96.15 94.00 96.36 93.04 98.64 93.38 93.78 95.91 92.41 95.81 94.23 96.34 96.27 92.47 96.23 97.06 96.85 96.36 95.83 97.50 96.51 97.25 88.52 92.86 96.15 96.13 K intron_retention Idgf2,Idgf3 chr2L + chr2L_16451928_16452193 chr2L_16451927_16451928;chr2L_16452193_16452194 chr2L_16451376_16451927;chr2L_16452194_16453042 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11055 chr2R + chr2R_16148252_16148311 chr2R_16148251_16148252;chr2R_16148311_16148312 chr2R_16148126_16148251;chr2R_16148312_16148546 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG17665 chr2R - chr2R_126662_129940 chr2R_126662_129593 chr2R_126199_126661;chr2R_129941_130204 98.59 100.00 100.00 98.70 96.43 96.67 98.63 98.90 97.50 100.00 100.00 97.37 97.44 100.00 97.56 98.59 97.78 100.00 98.28 97.18 100.00 88.24 96.97 96.67 95.83 100.00 97.22 100.00 96.00 96.30 87.69 100.00 95.24 98.72 100.00 96.67 100.00 100.00 100.00 97.22 95.00 95.65 100.00 100.00 100.00 95.24 100.00 100.00 96.20 100.00 100.00 96.00 100.00 100.00 98.04 100.00 96.00 96.43 K intron_retention pgant3,I_chr2R_2947729_2947783 chr2R - chr2R_2947141_2947561 chr2R_2947140_2947141;chr2R_2947561_2947562 chr2R_2945882_2947140;chr2R_2947562_2947728 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.41 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG42327,CG14715,I_chr3R_7498847_7498975,I_chr3R_7506312_7506381 chr3R + chr3R_7496704_7497125 chr3R_7496703_7496704;chr3R_7497125_7497126 chr3R_7493122_7496703;chr3R_7497126_7497222 2.20 1.60 3.53 0.00 2.44 3.12 4.05 2.63 2.11 1.45 3.92 2.21 0.00 3.39 0.00 6.49 0.00 3.49 0.00 2.39 0.00 2.68 0.00 1.27 1.72 0.00 3.57 6.84 4.31 4.55 0.00 1.82 1.71 0.00 2.94 3.37 1.30 3.23 1.04 2.66 3.45 2.22 4.29 0.00 1.71 1.45 1.59 4.47 3.77 1.64 0.78 5.06 2.20 2.56 0.00 0.00 1.96 2.24 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2395659 chrX_2388671_2389073;chrX_2389272_2392054;chrX_2392149_2392515;chrX_2392665_2395659 chrX_2389074_2389271;chrX_2392055_2392148;chrX_2392516_2392664 chrX_2388641_2388670;chrX_2395660_2395759 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG7530,I_chr3R_10556352_10557136,eff chr3R - chr3R_10556352_10557130;chr3R_10556352_10557148;chr3R_10556352_10557126;chr3R_10556352_10557198 chr3R_10556352_10557105 chr3R_10556252_10556351;chr3R_10557199_10557231 13.51 3.45 15.15 14.71 5.88 8.33 22.22 12.12 10.39 16.67 6.90 10.42 10.71 14.29 12.50 19.23 11.11 19.44 15.38 19.15 10.34 22.22 13.51 13.33 15.79 12.90 19.23 18.75 27.59 9.38 16.22 25.00 8.89 10.71 20.83 25.00 8.57 8.33 11.76 8.86 16.13 10.00 6.45 9.30 15.38 16.67 16.00 17.86 14.63 10.00 13.89 20.00 8.62 21.05 12.50 14.29 12.20 11.76 K jcn_only_AD CoRest,I_chrX_19416977_19417035 chrX + chrX_19416977_19417035;chrX_19416431_19417035;chrX_19416669_19417035;chrX_19416423_19417035 chrX_19416603_19417035 chrX_19417036_19417135;chrX_19416201_19416422 8.44 13.79 11.11 4.82 9.23 8.93 3.33 6.59 9.93 12.16 4.84 14.18 10.17 6.90 10.96 17.81 14.29 10.77 5.17 11.11 5.88 14.66 6.49 10.34 8.22 7.14 8.00 6.00 7.48 4.90 14.29 7.59 4.50 6.19 7.34 4.80 10.09 9.55 6.83 4.04 4.00 11.33 13.73 6.82 7.06 2.17 10.89 4.96 9.77 5.56 8.44 8.97 14.29 11.36 11.90 14.58 14.77 6.98 K alternative_donor how chr3R + chr3R_17867954_17868628 chr3R_17868078_17868628 chr3R_17868629_17869101;chr3R_17867942_17867953 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 96.15 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,RI_chr2L_126228_126309 chr2L - chr2L_118077_118135 chr2L_118076_118077;chr2L_118135_118136 chr2L_117983_118076;chr2L_118136_118204 0.00 0.00 2.38 1.44 0.00 0.00 1.69 1.18 2.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.99 0.00 0.00 0.00 0.00 9.52 11.43 1.16 0.00 0.00 0.00 1.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 K alternative_donor par-1,I_chr2R_15359242_15360944,I_chr2R_15359251_15359544,I_chr2R_15359251_15360944,I_chr2R_15359658_15359771,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15359242_15360323 chr2R_15359251_15360323 chr2R_15360324_15360436;chr2R_15359151_15359241 3.60 3.05 3.91 5.41 3.08 4.81 3.66 5.68 2.92 1.52 2.08 3.43 7.14 4.35 7.03 3.14 4.76 4.08 4.76 3.35 2.61 2.19 3.45 3.60 3.70 6.36 2.35 1.38 4.35 3.47 6.38 4.12 2.20 3.83 3.12 3.55 3.15 3.78 2.38 0.42 2.68 4.40 1.92 2.73 6.98 4.23 3.07 3.60 3.60 2.90 2.11 2.53 4.72 1.57 4.08 3.62 3.95 4.95 K alternative_acceptor 4EHP chr3R - chr3R_19889554_19889903 chr3R_19889783_19889903 chr3R_19889904_19890052;chr3R_19889096_19889553 30.00 NA NA NA NA NA 30.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG14445 chrX + chrX_6133208_6133420 chrX_6133268_6133420 chrX_6133421_6133444;chrX_6132979_6133207 80.95 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.95 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Sdc,RI_chr2R_17286086_17286391,I_chr2R_17286089_17286391,I_chr2R_17286819_17367595,I_chr2R_17324594_17367595 chr2R - chr2R_17286089_17286679 chr2R_17286088_17286089;chr2R_17286679_17286680 chr2R_17286037_17286088;chr2R_17286680_17286818 10.27 6.12 10.81 15.19 7.14 4.76 12.24 13.56 10.74 17.24 62.86 12.35 35.00 5.00 11.54 6.67 15.00 16.67 9.26 9.26 27.66 12.22 11.43 0.00 16.67 12.20 10.00 7.41 21.31 7.89 4.65 18.75 22.66 10.53 8.93 31.58 6.90 10.00 6.94 13.04 8.51 16.18 8.57 12.86 7.69 5.88 3.33 15.84 10.67 NA 6.82 3.57 0.00 9.09 10.53 6.25 0.00 6.74 K intron_retention scrib,I_chr3R_22416440_22420970,noncoding_19380,I_chr3R_22425016_22429281 chr3R + chr3R_22424435_22426968 chr3R_22424434_22424435;chr3R_22426968_22426969 chr3R_22424335_22424434;chr3R_22426969_22426981 15.07 17.65 NA NA NA NA 47.37 21.05 16.28 NA NA 26.09 NA NA 25.00 14.29 NA NA NA 21.43 NA 15.15 9.38 16.67 6.25 NA NA NA 20.00 12.50 NA NA 15.00 23.08 NA 17.07 12.50 NA 5.00 6.67 NA 16.67 NA 16.67 0.00 6.67 NA 25.00 13.04 NA 10.00 NA 0.00 NA NA NA 3.85 5.56 K jcn_only_AA alph,I_chr3R_25417890_25422962 chr3R + chr3R_25417890_25422962 chr3R_25417890_25418993 chr3R_25417790_25417889 98.41 98.56 98.88 96.68 100.00 97.33 96.68 98.49 99.46 95.65 99.28 99.33 98.62 97.24 98.91 97.82 100.00 99.36 99.46 97.42 99.25 88.31 100.00 100.00 95.89 98.79 95.92 100.00 98.41 96.64 99.50 97.52 90.05 98.45 98.92 94.79 98.50 100.00 96.80 96.90 94.57 98.19 100.00 99.33 96.64 95.33 100.00 97.25 95.52 98.68 98.33 97.65 97.96 94.12 99.02 97.44 98.85 95.82 K intron_retention AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9003790_9004650 chrX_9003789_9003790;chrX_9004650_9004651 chrX_9003721_9003789;chrX_9004651_9005038 96.88 100.00 NA 100.00 NA NA 93.75 100.00 100.00 NA NA 92.86 NA 100.00 NA 93.75 NA NA NA 90.91 NA NA 88.89 NA 100.00 100.00 100.00 NA NA NA NA NA NA 92.86 NA NA NA NA NA NA NA 91.67 NA NA NA NA NA NA 90.91 NA NA NA NA NA NA NA NA NA K jcn_only_AD Trf4-1,I_chrX_8455293_8457185,RI_chrX_8455791_8457185,R_chrX_8455801_8457185,I_chrX_8455902_8457185,I_chrX_8459198_8459266 chrX + chrX_8454992_8457185;chrX_8454847_8457185 chrX_8455100_8457185 chrX_8457186_8457285;chrX_8454674_8454846 11.76 10.34 13.89 8.06 16.00 13.89 6.82 6.45 15.94 NA NA 21.13 8.00 20.51 9.52 7.84 25.00 4.00 20.59 11.76 15.38 NA 10.34 7.32 4.00 17.39 11.36 NA NA NA 13.16 NA NA 5.45 NA 10.00 NA NA 9.68 14.81 NA 15.07 11.76 35.00 NA NA 13.64 NA 11.27 NA 13.46 10.71 NA NA 13.51 25.00 NA NA K intron_retention beta-Spec chrX + chrX_17551571_17555021 chrX_17551570_17551571;chrX_17555021_17555022 chrX_17551397_17551570;chrX_17555022_17561265 3.92 0.00 10.00 10.29 0.00 3.23 6.67 4.85 8.65 0.00 6.06 9.68 3.85 4.29 6.82 5.71 4.08 6.00 4.76 8.51 5.26 4.29 8.00 3.85 0.00 8.33 4.88 0.00 0.00 0.00 6.41 0.00 0.00 4.81 6.90 1.67 7.41 NA 0.00 0.00 0.00 8.00 4.44 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 4.00 0.00 0.00 4.84 0.00 0.00 0.00 K jcn_only_AD CG17912,I_chr2L_16749189_16749266 chr2L + chr2L_16743565_16743759 chr2L_16743571_16743759 chr2L_16743760_16744067;chr2L_16743436_16743564 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.42 100.00 100.00 100.00 99.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.95 100.00 100.00 100.00 100.00 100.00 100.00 98.48 100.00 100.00 98.94 99.54 100.00 99.19 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor kay,E_chr3R_25616137_25617114 chr3R + chr3R_25616577_25617114;chr3R_25615618_25617114 chr3R_25616533_25617114 chr3R_25617115_25617214;chr3R_25615520_25615617 3.45 3.85 3.03 1.92 4.00 4.00 1.79 1.64 1.45 6.25 3.57 1.39 2.13 4.00 3.45 2.00 3.70 11.11 3.23 1.01 4.76 1.47 2.33 6.06 3.70 3.45 4.44 1.64 4.55 0.00 4.17 7.69 0.00 2.04 4.55 1.85 2.00 3.70 2.27 2.56 7.69 1.64 3.85 4.00 0.00 4.35 0.00 3.70 1.96 3.33 5.56 5.88 0.00 5.88 3.57 0.00 2.63 5.00 K alternative_acceptor CG5941,RI_chrX_5932013_5932056 chrX + chrX_5932013_5932073 chrX_5932013_5932056 chrX_5931913_5932012;chrX_5932074_5932120 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD sw chrX - chrX_20106821_20106881 chrX_20106821_20106877 chrX_20106583_20106820;chrX_20106882_20106940 27.27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 27.27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Sdc,RI_chr2R_17286086_17286391,I_chr2R_17286089_17286391,I_chr2R_17286819_17367595,I_chr2R_17324594_17367595 chr2R - chr2R_17286086_17286679 chr2R_17286085_17286086;chr2R_17286679_17286680 chr2R_17286037_17286085;chr2R_17286680_17286818 9.47 5.77 9.76 11.88 5.00 4.44 12.00 10.67 10.92 15.62 55.00 9.47 23.33 3.92 10.00 6.90 15.00 10.81 10.87 8.77 27.91 11.34 12.31 0.00 10.91 13.16 8.62 5.00 19.40 9.09 4.17 15.38 22.14 6.49 9.09 31.03 6.25 11.32 8.06 13.64 9.52 12.94 7.69 10.11 4.84 5.63 2.27 11.03 9.30 9.09 5.36 2.63 0.00 5.56 11.11 5.88 0.00 5.08 K cassette CG11266,RI_chr2L_7033019_7034764,I_chr2L_7034274_7034764,I_chr2L_7034274_7035406,RI_chr2L_7034911_7035074,I_chr2L_7051093_7051366 chr2L + chr2L_7034274_7035406;chr2L_7033019_7035406 chr2L_7033019_7034764,chr2L_7034274_7034764;chr2L_7034913_7035406 chr2L_7034765_7034912 chr2L_7032919_7033018;chr2L_7035407_7035506 10.53 7.14 14.81 6.82 8.33 26.09 16.67 25.00 16.00 4.44 10.53 18.03 28.00 35.29 12.90 28.57 11.76 12.90 24.00 10.53 15.00 9.46 11.90 6.82 6.38 3.12 5.56 0.00 3.90 7.50 40.00 4.17 1.22 21.95 5.00 NA 12.50 8.82 8.89 8.82 3.61 11.11 21.05 15.38 1.96 6.10 6.82 5.47 20.37 10.53 15.38 11.11 2.22 11.76 36.00 12.82 5.71 2.33 K intron_retention RhoGAP92B chr3R + chr3R_15737582_15738033 chr3R_15737581_15737582;chr3R_15738033_15738034 chr3R_15736615_15737581;chr3R_15738034_15739398 4.21 6.19 5.66 1.85 3.57 3.19 4.58 4.12 3.00 4.44 4.21 3.03 24.14 5.15 4.67 5.65 4.60 6.06 4.39 4.57 2.30 5.04 2.76 4.46 5.26 4.71 2.78 2.22 19.15 2.70 6.00 5.66 0.00 3.53 5.48 8.64 1.63 2.80 3.03 3.62 7.55 4.57 3.19 3.70 6.82 5.68 2.94 3.77 3.91 8.73 2.44 4.76 2.70 9.46 3.42 4.00 3.97 3.12 K intron_retention CG14937,crol,I_chr2L_11799403_11802904 chr2L - chr2L_11793240_11793296 chr2L_11793239_11793240;chr2L_11793296_11793297 chr2L_11792626_11793239;chr2L_11793297_11793946 90.91 NA NA NA NA NA NA NA NA 92.31 NA NA NA NA NA NA NA NA NA NA NA 94.74 90.91 88.89 NA NA 90.00 NA NA NA NA NA 100.00 NA NA 87.50 92.86 NA 100.00 100.00 NA NA NA 100.00 NA 87.50 NA 90.91 NA 90.00 90.00 NA NA NA NA NA NA NA K intron_retention CG12582 chr3R + chr3R_29885_29940 chr3R_29884_29885;chr3R_29940_29941 chr3R_29816_29884;chr3R_29941_29981 72.13 78.57 66.67 68.89 81.48 65.38 73.68 60.47 73.68 67.86 70.00 70.97 68.42 77.78 68.75 64.29 64.00 68.00 60.87 72.13 72.00 70.83 82.61 76.92 77.27 66.67 85.11 84.91 84.48 56.25 59.46 70.18 72.41 84.62 70.83 44.44 71.11 85.29 74.29 67.65 82.09 70.00 76.47 73.08 77.97 78.57 81.25 72.13 62.79 72.88 75.00 75.00 65.85 75.68 66.67 78.57 85.71 58.76 K intron_retention CG3305,CREI_chr2L_21573959_21574786 chr2L + chr2L_21575114_21575966 chr2L_21575113_21575114;chr2L_21575966_21575967 chr2L_21574787_21575113;chr2L_21575967_21576186 88.19 NA NA 86.36 NA NA NA 90.00 88.89 NA NA 71.43 87.50 NA NA 92.31 NA NA NA 80.00 NA NA NA NA NA NA NA NA 75.00 NA NA NA NA 88.89 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG9007,RI_chr3L_14010982_14011111 chr3L + chr3L_14010982_14011111 chr3L_14010982_14011045 chr3L_14010882_14010981;chr3L_14011112_14011211 98.15 97.06 98.11 98.21 92.59 100.00 100.00 94.29 96.10 100.00 96.15 100.00 100.00 97.22 100.00 98.18 100.00 93.55 100.00 98.68 100.00 96.67 95.45 97.92 100.00 100.00 97.44 100.00 93.75 100.00 100.00 NA 97.30 95.89 95.65 96.77 97.96 100.00 100.00 98.00 100.00 97.01 93.10 100.00 NA 100.00 100.00 97.92 96.77 100.00 100.00 97.22 NA NA 93.62 92.31 NA 100.00 K intron_retention mRpS30,I_chrX_15680663_15680821 chrX + chrX_15680663_15680826 chrX_15680662_15680663;chrX_15680826_15680827 chrX_15680563_15680662;chrX_15680827_15680921 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 1.54 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 2.00 1.35 0.00 5.10 0.98 0.00 0.00 3.12 0.00 0.00 0.00 0.00 3.23 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.97 0.00 0.00 0.00 0.00 1.87 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Rpd3 chr3L + chr3L_4627533_4627610 chr3L_4627533_4627583 chr3L_4627420_4627532;chr3L_4627611_4628856 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Spp,Ets21C,rempA chr2L - chr2L_543350_543415 chr2L_543349_543350;chr2L_543415_543416 chr2L_543282_543349;chr2L_543416_543492 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.09 0.00 0.00 0.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.51 0.00 0.00 0.00 0.00 K jcn_only_AA RpL12,I_chr2R_19948517_19948655,RI_chr2R_19948517_19948677,I_chr2R_19948517_19948682 chr2R + chr2R_19948517_19948682;chr2R_19948517_19948677;chr2R_19948517_19948655 chr2R_19948517_19948672 chr2R_19948417_19948516;chr2R_19948683_19948755 99.96 99.95 99.97 99.98 99.96 99.88 99.93 99.98 99.99 99.97 99.93 99.94 99.98 100.00 99.99 99.97 100.00 99.97 99.91 99.97 99.98 99.97 99.92 99.97 99.95 100.00 99.97 99.77 99.89 99.94 99.86 99.93 100.00 99.93 99.92 99.98 99.91 99.95 99.97 100.00 99.98 99.97 99.96 99.95 99.86 99.92 99.95 99.94 99.97 99.95 100.00 99.98 99.97 99.92 99.94 99.96 99.91 99.95 K intron_retention Eps-15,I_chr2R_20660319_20660496,CRE_chr2R_20660823_20660880 chr2R - chr2R_20660319_20660734 chr2R_20660318_20660319;chr2R_20660734_20660735 chr2R_20660219_20660318;chr2R_20660735_20660822 5.88 6.67 NA 4.44 NA NA 7.41 7.14 4.55 NA NA NA NA NA NA 13.33 NA NA NA 20.00 NA NA 3.45 6.67 NA 0.00 NA NA 4.76 NA 6.67 NA 0.00 11.76 NA 0.00 NA NA NA 5.88 0.00 20.00 NA NA NA 0.00 NA 0.00 15.00 NA 6.67 NA 0.00 NA 15.79 11.76 0.00 0.00 K jcn_only_AA aux chr3R + chr3R_51162_51255 chr3R_51162_51219 chr3R_50788_51161;chr3R_51256_52181 98.80 96.23 97.09 98.60 100.00 98.82 97.01 97.90 99.01 98.28 98.91 96.93 98.80 100.00 99.13 97.30 98.80 98.99 99.04 100.00 100.00 99.09 97.37 97.26 98.92 96.67 98.53 98.00 96.70 98.08 100.00 100.00 100.00 99.23 100.00 96.77 98.88 98.28 97.56 98.14 98.31 100.00 97.83 98.32 99.00 98.73 98.81 97.94 98.93 98.10 98.51 98.89 100.00 100.00 98.99 100.00 100.00 97.78 K jcn_only_AA sgg,I_chrX_2529065_2563945,I_chrX_2536127_2563666,I_chrX_2563342_2563666,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2536127_2563945;chrX_2536127_2563666 chrX_2536127_2539408 chrX_2536027_2536126 2.78 0.00 2.78 4.08 3.39 4.41 3.66 1.41 1.75 0.00 0.00 4.04 1.61 8.06 3.26 6.25 0.00 0.00 3.17 0.00 4.08 1.75 2.06 2.04 4.05 4.35 3.33 6.45 3.12 2.80 5.88 2.44 1.87 6.06 3.51 1.87 1.23 2.94 0.98 3.68 3.23 4.46 3.33 2.60 0.00 2.83 0.00 4.27 3.33 2.27 1.19 1.52 1.75 0.00 4.35 0.00 0.00 0.93 K jcn_only_AD stck,I_chr3R_4184313_4184380,I_chr3R_4184660_4184730 chr3R + chr3R_4182496_4184192;chr3R_4182818_4184192 chr3R_4183179_4184192 chr3R_4184193_4184312;chr3R_4182427_4182495 37.21 NA 45.00 37.21 NA NA 25.00 22.22 13.95 NA NA 38.78 29.63 NA 17.39 19.35 NA NA 60.00 52.08 NA 63.64 50.00 25.00 NA 39.29 NA NA 60.71 NA 48.00 NA NA 17.39 NA NA 36.17 21.74 32.00 51.61 NA 18.42 NA 51.85 72.00 41.38 47.83 NA 11.54 23.68 59.26 18.52 NA 55.00 17.24 45.71 34.38 NA K alternative_donor Rcd6,I_chr2R_16518342_16520460,I_chr2R_16518620_16518916,RI_chr2R_16520388_16520855 chr2R - chr2R_16518620_16518916;chr2R_16518620_16520855 chr2R_16518620_16520294 chr2R_16518520_16518619;chr2R_16520856_16520918 66.67 NA 100.00 60.00 100.00 NA 33.33 75.00 66.67 NA NA 33.33 50.00 66.67 100.00 66.67 0.00 50.00 66.67 75.00 NA 75.00 50.00 50.00 50.00 33.33 0.00 33.33 33.33 66.67 33.33 NA 75.00 75.00 66.67 0.00 66.67 50.00 NA 80.00 NA 66.67 NA 66.67 100.00 66.67 NA 50.00 60.00 NA NA NA NA NA 66.67 NA NA 66.67 N jcn_only_AA Trc8 chr3R - chr3R_25326221_25326440;chr3R_25325222_25326440 chr3R_25326236_25326440 chr3R_25326441_25326615 49.54 44.04 50.72 53.00 46.67 56.76 37.10 57.14 49.40 71.25 43.66 46.21 43.18 55.93 38.37 53.97 48.53 39.13 50.79 47.47 40.00 46.59 39.57 52.21 51.25 60.81 53.91 58.51 54.00 43.40 40.70 57.58 49.53 49.12 48.31 75.32 55.49 58.72 53.29 48.00 50.00 47.27 42.59 41.11 57.03 52.21 47.79 51.16 43.97 50.88 45.13 57.50 51.35 48.35 60.00 49.54 43.59 56.76 K intron_retention CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_120081_120420 chr2L_120080_120081;chr2L_120420_120421 chr2L_119981_120080;chr2L_120421_120430 18.35 21.88 13.64 18.67 23.33 21.88 21.43 24.18 24.24 NA 24.24 16.85 48.48 23.26 15.00 28.57 18.18 14.63 23.21 14.29 20.00 18.75 15.87 20.00 23.68 5.26 23.40 29.41 14.81 13.64 13.46 15.00 20.00 24.44 22.22 17.65 16.67 20.69 5.88 14.29 16.00 16.28 24.32 15.56 0.00 9.80 10.81 16.07 18.60 28.12 18.18 26.67 0.00 14.29 18.52 20.00 10.71 10.42 K intron_retention CG12773 chrX - chrX_1246262_1246318 chrX_1246261_1246262;chrX_1246318_1246319 chrX_1246027_1246261;chrX_1246319_1246520 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention dream chr2R - chr2R_1908917_1908975 chr2R_1908916_1908917;chr2R_1908975_1908976 chr2R_1908254_1908916;chr2R_1908976_1909387 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 10.53 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention hkl,CG10470 chr2L + chr2L_19049365_19049421 chr2L_19049364_19049365;chr2L_19049421_19049422 chr2L_19049287_19049364;chr2L_19049422_19049931 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 5.13 1.82 0.00 1.79 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 K alternative_donor RI_chr3R_5165997_5180143,CG33936,noncoding_15544,I_chr3R_5167726_5180143,RI_chr3R_5183458_5183705 chr3R + chr3R_5167648_5167941;chr3R_5167693_5167941 chr3R_5167726_5167941 chr3R_5167942_5167998;chr3R_5167626_5167647 81.05 78.08 NA 80.00 NA 83.33 NA 88.15 89.31 88.46 75.00 78.47 86.52 88.42 63.95 84.75 75.00 73.97 80.77 79.82 NA NA 87.63 79.82 78.21 79.21 75.51 57.53 92.16 90.32 73.79 64.71 87.50 74.40 93.33 88.89 NA 67.09 83.33 89.77 88.89 81.33 93.15 90.42 75.00 90.74 NA 89.83 88.31 78.67 92.05 73.50 70.00 86.21 81.52 70.42 68.35 78.43 K alternative_acceptor MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17399683_17403392;chr2R_17399683_17403481;chr2R_17399683_17401713 chr2R_17399683_17401733 chr2R_17399598_17399682;chr2R_17403482_17403550 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Dp,I_chr2R_9111166_9112971,REI_chr2R_9113257_9113316 chr2R + chr2R_9110618_9112971 chr2R_9110617_9110618;chr2R_9112971_9112972 chr2R_9109979_9110617;chr2R_9112972_9113071 10.81 14.29 12.50 14.67 18.52 6.82 26.00 12.36 10.81 15.00 5.13 17.24 9.80 8.93 14.55 10.42 10.64 14.00 12.24 10.81 11.63 34.52 11.43 7.89 17.65 9.80 16.00 13.33 18.87 12.37 9.80 10.94 10.29 9.59 6.00 20.75 10.34 5.88 8.93 6.54 7.02 7.76 15.56 7.50 8.54 5.26 11.36 10.17 10.58 4.44 13.64 7.69 7.41 12.00 10.77 12.00 21.88 5.11 K intron_retention mask,I_chr3R_20073365_20073461 chr3R + chr3R_20056371_20057376 chr3R_20056370_20056371;chr3R_20057376_20057377 chr3R_20056363_20056370;chr3R_20057377_20058696 0.00 0.00 NA 12.20 0.00 NA 9.52 6.38 4.76 NA 12.50 2.78 0.00 2.56 0.00 0.00 0.00 NA 3.12 0.00 NA 0.00 0.00 NA NA 5.56 0.00 NA NA 0.00 0.00 NA NA 5.00 16.67 10.53 6.67 NA NA 0.00 NA 5.00 0.00 0.00 NA NA NA NA 2.38 NA 6.06 0.00 NA NA 0.00 NA NA NA K alternative_acceptor CG4049,I_chr2R_20000795_20001276 chr2R - chr2R_19996166_19996223 chr2R_19996175_19996223 chr2R_19996224_19996457;chr2R_19995429_19996165 95.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG1109,CG1347 chr3R + chr3R_1488883_1488938 chr3R_1488882_1488883;chr3R_1488938_1488939 chr3R_1488785_1488882;chr3R_1488939_1489022 13.56 14.71 10.34 8.51 7.41 9.09 8.70 8.33 11.48 22.22 13.79 10.91 23.08 8.33 9.68 11.54 19.05 14.63 18.52 16.33 5.26 19.61 14.29 16.33 12.50 16.13 12.77 16.67 20.37 8.47 34.29 16.67 17.98 8.33 14.29 26.67 13.04 14.29 13.56 17.33 20.93 9.68 21.74 15.69 10.45 10.87 17.65 11.70 6.90 19.44 16.00 6.90 9.80 16.67 6.67 11.36 11.90 11.70 K jcn_only_AA CG18624,RI_chrX_7787450_7787620,RI_chrX_7787450_7787687,RI_chrX_7787524_7787687 chrX - chrX_7787450_7787620 chrX_7787524_7787620 chrX_7787621_7787704;chrX_7787424_7787449 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 97.50 NA NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 97.44 95.24 100.00 NA 100.00 NA 100.00 100.00 NA 95.83 NA 97.78 96.88 100.00 100.00 100.00 100.00 NA NA NA 100.00 100.00 100.00 96.30 100.00 100.00 97.14 100.00 97.50 100.00 100.00 100.00 NA NA NA 95.45 100.00 100.00 97.14 K alternative_donor Atpalpha,I_chr3R_16783890_16785070,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16783540_16784958 chr3R_16783890_16784958 chr3R_16784959_16785012;chr3R_16783510_16783539 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.35 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor neur,Nmdmc chr3R - chr3R_4847764_4847825 chr3R_4847767_4847825 chr3R_4847826_4849567;chr3R_4846119_4847763 7.69 14.29 NA 3.45 20.00 NA NA 4.17 9.09 12.00 NA 11.11 NA NA 5.88 NA NA 6.67 6.67 8.33 NA 9.52 11.11 8.70 6.25 NA 10.53 11.76 6.25 7.14 NA NA 7.69 10.34 5.56 19.05 5.13 0.00 9.68 5.71 7.14 6.90 NA 4.35 8.00 NA 4.76 7.69 11.11 6.67 9.09 5.00 NA NA 11.11 12.50 NA 5.56 K intron_retention Manf chr3R + chr3R_12175750_12176138 chr3R_12175749_12175750;chr3R_12176138_12176139 chr3R_12175608_12175749;chr3R_12176139_12176526 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14667 chr3R + chr3R_1200939_1200999 chr3R_1200938_1200939;chr3R_1200999_1201000 chr3R_1200775_1200938;chr3R_1201000_1201646 7.69 NA NA 7.14 NA NA NA NA 6.25 NA NA 6.25 NA NA NA 12.50 NA NA 0.00 5.56 NA 14.29 35.71 NA NA NA NA NA NA NA NA NA 10.53 NA NA NA NA 7.69 7.69 27.27 NA NA NA NA NA 0.00 NA 15.38 20.00 NA NA NA NA NA NA NA 0.00 NA K cassette Axn,I_chr3R_25849563_25849626 chr3R + chr3R_25857835_25858652 chr3R_25857835_25858395;chr3R_25858534_25858652 chr3R_25858396_25858533 chr3R_25857145_25857834;chr3R_25858653_25858749 100.00 100.00 100.00 98.48 100.00 100.00 98.33 100.00 98.77 98.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 K alternative_donor east,CR_chrX_1912038_1912737 chrX + chrX_1912120_1912737 chrX_1912243_1912737 chrX_1912738_1912837;chrX_1912113_1912119 91.67 100.00 90.48 97.06 93.75 92.31 91.30 97.06 97.44 76.92 93.75 93.55 92.31 93.75 81.25 91.67 91.67 92.86 83.33 89.74 92.86 85.71 91.67 94.44 92.86 93.75 88.00 85.71 92.86 94.74 94.44 87.50 64.71 89.66 69.23 93.33 89.47 92.86 82.61 78.57 88.89 89.47 80.00 94.12 100.00 100.00 90.91 89.29 88.37 90.91 86.36 92.86 91.67 87.50 94.44 80.00 100.00 95.24 K intron_retention CG1927 chr3L - chr3L_1967140_1967199 chr3L_1967139_1967140;chr3L_1967199_1967200 chr3L_1966689_1967139;chr3L_1967200_1967502 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 2.59 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon bol,I_chr3L_9095908_9105733,RI_chr3L_9117011_9118271 chr3L - chr3L_9095908_9105733 chr3L_9101292_9105733 chr3L_9094048_9095907 chr3L_9101232_9101291 chr3L_9105734_9105833 75.00 75.00 88.89 86.67 77.78 76.92 57.14 75.00 78.12 75.00 81.82 77.27 60.00 66.67 80.00 66.67 80.00 62.50 76.92 70.00 66.67 87.50 77.78 90.00 80.00 92.31 80.00 87.50 60.00 71.43 72.73 75.00 72.73 80.00 83.33 85.71 92.86 80.00 88.89 76.47 75.00 72.73 84.62 66.67 33.33 62.50 66.67 69.23 76.00 71.43 50.00 90.00 50.00 66.67 86.67 66.67 33.33 54.55 N cassette CG31522,I_chr3R_270285_272461,I_chr3R_272255_272359,RI_chr3R_273677_279264 chr3R - chr3R_272255_273422 chr3R_272255_272461;chr3R_272545_273422 chr3R_272462_272544 chr3R_272155_272254;chr3R_273423_273560 100.00 100.00 100.00 81.54 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD RpL10Ab chr3L + chr3L_11816456_11816757;chr3L_11816666_11816757 chr3L_11816530_11816757 chr3L_11816758_11817314;chr3L_11816300_11816455 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 K jcn_only_AD cnc,I_chr3R_19014852_19016738,I_chr3R_19046366_19046507,I_chr3R_19046619_19047567 chr3R - chr3R_19035606_19043600 chr3R_19035606_19035704 chr3R_19035330_19035605;chr3R_19043601_19044848 0.00 0.00 0.00 0.00 0.00 0.00 1.61 1.85 1.59 5.26 NA 1.64 NA 9.09 0.00 3.33 0.00 3.85 0.00 0.00 NA 0.87 0.00 2.56 3.57 0.00 0.00 3.03 0.00 0.00 0.00 0.00 1.09 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 2.22 NA 0.00 2.33 2.38 0.00 1.06 0.00 NA 0.00 4.00 3.45 4.55 0.00 0.00 9.52 0.00 K intron_retention bun,I_chr2L_12458224_12458352,I_chr2L_12458224_12460889,I_chr2L_12477167_12504078,I_chr2L_12477167_12507485,I_chr2L_12520177_12536274,I_chr2L_12537393_12537634,RI_chr2L_12540901_12546409 chr2L - chr2L_12458224_12460588 chr2L_12458223_12458224;chr2L_12460588_12460589 chr2L_12458124_12458223;chr2L_12460589_12461406 3.70 3.31 6.14 3.82 6.49 5.15 4.51 4.88 3.28 4.76 2.33 6.93 4.12 5.93 5.13 4.64 2.67 4.76 6.25 2.89 4.81 1.97 1.36 2.82 1.94 6.94 6.12 22.47 3.85 2.67 4.14 3.70 2.27 5.97 1.90 0.00 0.00 0.88 2.63 2.82 3.92 5.48 3.85 0.87 0.00 3.03 1.71 6.12 5.07 2.56 2.52 0.00 0.00 2.90 5.51 2.44 0.00 6.25 K jcn_only_AA CG17352,I_chr3L_8351006_8351949,I_chr3L_8351036_8351655 chr3L - chr3L_8346513_8346578 chr3L_8346527_8346578 chr3L_8346579_8347283;chr3L_8345596_8346512 80.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N jcn_only_AA CG8790 chr3R + chr3R_9190952_9193460;chr3R_9190952_9193285;chr3R_9190952_9193295 chr3R_9190952_9191016 chr3R_9190661_9190951 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD CG11200 chr2R - chr2R_16194142_16196065 chr2R_16194142_16195651 chr2R_16193920_16194141;chr2R_16196066_16196078 8.01 NA 4.55 5.13 NA 10.00 NA 5.56 3.57 NA NA 4.44 20.00 7.69 NA 0.00 NA NA 7.69 14.81 NA NA NA 10.71 NA 8.33 14.29 NA NA NA 4.76 NA NA 9.09 NA NA NA NA 19.05 6.38 NA 5.77 NA NA NA 14.81 NA 9.38 10.42 6.67 14.81 18.18 NA NA 0.00 4.35 NA 14.29 K cassette tmod,I_chr3R_26398795_26402319,I_chr3R_26402545_26402900,I_chr3R_26402561_26402900 chr3R + chr3R_26398795_26402900 chr3R_26398795_26402319;chr3R_26402541_26402900 chr3R_26402320_26402540 chr3R_26398695_26398794;chr3R_26402901_26403000 1.45 2.78 1.92 2.82 0.00 2.70 4.84 1.85 2.00 0.00 3.45 1.43 2.86 2.00 0.00 3.70 2.44 2.50 4.00 1.75 0.00 1.02 0.82 0.96 1.56 2.27 1.06 1.45 1.35 0.00 2.00 1.45 1.12 2.78 1.45 1.75 0.76 1.37 0.00 1.49 0.99 2.60 5.88 1.03 1.37 0.95 0.00 2.27 4.60 0.88 1.12 1.92 1.06 1.23 3.39 1.27 0.62 0.72 K intron_retention RhoGAP15B chrX + chrX_16847488_16847546 chrX_16847487_16847488;chrX_16847546_16847547 chrX_16847361_16847487;chrX_16847547_16848187 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 K alternative_acceptor CG2698,I_chr3R_3828169_3828941,I_chr3R_3828880_3828941,I_chr3R_3829483_3829715,I_chr3R_3830586_3830981 chr3R + chr3R_3829483_3829697;chr3R_3829483_3829555;chr3R_3829483_3829721 chr3R_3829483_3829709 chr3R_3829383_3829482;chr3R_3829722_3829815 11.76 12.20 7.14 9.52 11.54 17.86 12.70 8.82 14.08 5.56 14.29 10.14 8.82 13.51 11.76 6.67 20.00 0.00 5.88 18.52 6.06 2.38 15.62 8.77 11.36 21.43 12.50 7.41 9.68 10.26 8.70 12.82 18.42 13.85 10.53 10.64 17.50 13.64 16.07 10.13 9.52 12.50 12.50 6.90 17.31 9.52 9.09 12.31 13.51 15.25 7.94 15.00 10.71 15.79 11.54 13.46 12.00 19.15 K intron_retention Ser,I_chr3R_23013597_23017227 chr3R - chr3R_23002030_23002093 chr3R_23002029_23002030;chr3R_23002093_23002094 chr3R_23001934_23002029;chr3R_23002094_23002288 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 6.52 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.23 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor wee chr2L - chr2L_6913282_6913425 chr2L_6913366_6913425 chr2L_6913426_6913993;chr2L_6912945_6913281 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545799_17545850;chr2R_17545767_17545850;chr2R_17545615_17545850;chr2R_17545781_17545850;chr2R_17545686_17545850 chr2R_17545690_17545850 chr2R_17545851_17545985;chr2R_17545613_17545614 0.00 1.37 0.00 0.00 0.00 1.12 0.00 0.00 0.00 3.70 0.00 0.00 1.69 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 1.35 0.00 NA 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 2.99 0.00 1.85 0.00 0.00 0.54 0.00 0.00 2.11 1.64 1.79 2.44 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 K intron_retention Hyperkinetic,RI_chrX_10148341_10148752,I_chrX_10148341_10149525,CG34319,noncoding_22888,I_chrX_10152994_10153223 chrX - chrX_10148341_10149525 chrX_10148340_10148341;chrX_10149525_10149526 chrX_10148241_10148340;chrX_10149526_10149619 84.62 NA NA 81.82 NA 80.00 95.65 78.95 90.00 81.82 NA 100.00 NA NA NA NA NA NA NA 73.33 NA 84.62 71.43 88.89 90.00 92.31 80.00 87.50 NA 87.50 NA NA 84.62 63.64 NA 94.12 NA NA 69.23 65.00 87.50 91.67 NA 90.00 NA 45.45 NA 56.25 76.92 NA 86.67 NA NA 63.64 NA NA NA NA K intron_retention Liprin-alpha chr2L + chr2L_6724178_6724826 chr2L_6724177_6724178;chr2L_6724826_6724827 chr2L_6724117_6724177;chr2L_6724827_6725096 6.90 10.53 0.00 4.35 12.50 NA 16.67 7.14 10.87 0.00 NA 9.09 NA 12.50 3.70 7.41 0.00 0.00 0.00 5.88 0.00 33.33 14.29 0.00 36.36 0.00 0.00 NA 0.00 6.06 6.25 NA 10.42 9.09 0.00 NA 6.25 0.00 12.00 9.68 NA 5.00 14.29 9.09 NA NA NA 7.14 11.43 NA 8.33 6.67 NA NA 15.00 NA NA 0.00 K alternative_donor Pkc98E chr3R + chr3R_24865713_24866817 chr3R_24865795_24866817 chr3R_24866818_24867147;chr3R_24865708_24865712 85.71 NA NA 90.00 NA 87.50 88.89 76.92 73.33 100.00 85.71 71.43 NA NA 83.33 85.71 NA NA 85.71 70.59 100.00 36.84 84.62 100.00 NA 87.50 85.71 83.33 92.31 71.43 50.00 NA 100.00 72.73 NA 75.00 75.00 NA 100.00 91.67 NA 92.86 NA 83.33 NA NA NA 88.89 76.92 NA 100.00 NA NA NA 85.71 71.43 NA NA K intron_retention CRMP,I_chr3R_1401648_1403314 chr3R + chr3R_1401648_1401896 chr3R_1401647_1401648;chr3R_1401896_1401897 chr3R_1401548_1401647;chr3R_1401897_1402048 40.00 31.25 NA 77.78 NA NA NA NA 41.18 29.17 NA 30.43 NA NA 66.67 NA 60.00 NA NA 53.33 NA 20.00 40.00 48.15 33.33 NA 47.06 NA NA 35.29 22.22 NA 36.84 33.33 43.75 28.57 42.42 41.67 37.50 46.43 NA 33.33 NA 28.57 17.65 38.46 38.89 36.36 43.33 40.00 50.00 41.67 NA 46.15 60.00 47.37 NA 25.00 K intron_retention veg,I_chr2R_12845291_12845765 chr2R + chr2R_12843183_12843242 chr2R_12843182_12843183;chr2R_12843242_12843243 chr2R_12843138_12843182;chr2R_12843243_12844808 30.00 34.78 33.33 45.83 22.22 23.08 18.42 32.26 30.00 47.06 NA 25.00 NA 19.05 29.63 35.14 25.00 29.17 31.25 23.26 14.29 33.33 30.00 28.57 50.00 35.71 36.11 44.00 57.14 30.43 17.14 50.00 55.00 34.62 33.33 40.74 28.21 22.22 24.14 36.54 30.00 21.15 30.00 31.43 42.11 30.23 39.29 29.63 33.33 24.14 24.00 25.00 44.44 21.05 23.08 28.57 25.81 38.46 K alternative_donor CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516706_21517821;chr3L_21516330_21517821;chr3L_21516399_21517821;chr3L_21517168_21517821;chr3L_21516722_21517821;chr3L_21516501_21517821;chr3L_21516918_21517821;chr3L_21516728_21517821 chr3L_21516343_21517821 chr3L_21517822_21517920;chr3L_21516311_21516329 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor eIF2B-beta,RI_chrX_2598807_2598852 chrX + chrX_2598807_2598869 chrX_2598807_2598852 chrX_2598707_2598806;chrX_2598870_2598952 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.00 1.25 0.00 1.41 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.78 0.61 0.00 0.76 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention krz,RE_chr3R_27875587_27876986 chr3R - chr3R_27875592_27876990 chr3R_27875591_27875592;chr3R_27876990_27876991 chr3R_27875347_27875591;chr3R_27876991_27877086 13.89 12.20 8.47 16.90 14.71 4.88 5.26 12.07 7.69 23.08 18.92 9.59 23.08 11.36 5.00 11.67 9.30 20.00 10.00 13.79 12.90 16.98 12.90 10.17 21.05 7.32 20.37 22.41 44.00 9.76 10.94 13.33 11.54 9.23 13.89 14.29 14.29 21.05 13.95 16.67 15.15 10.00 2.94 13.16 19.35 16.33 17.95 12.12 9.20 16.67 14.58 17.65 16.67 23.08 10.61 15.79 20.34 14.29 K intron_retention CG1317 chr3L - chr3L_2368426_2368629 chr3L_2368425_2368426;chr3L_2368629_2368630 chr3L_2368013_2368425;chr3L_2368630_2370048 23.21 13.89 31.58 54.00 33.33 21.43 42.11 27.69 28.38 28.57 8.82 23.61 16.67 32.43 21.74 22.97 16.00 20.59 24.49 28.00 12.50 18.37 25.00 18.87 23.53 23.08 23.21 31.11 24.39 16.28 26.79 32.81 20.69 20.00 20.00 60.00 14.00 18.75 15.38 26.58 23.21 22.86 21.43 12.16 42.86 31.15 23.08 41.53 20.48 20.37 37.14 24.32 23.33 33.33 23.53 15.87 16.95 26.67 K alternative_acceptor Zyx102EF,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1081261_1081366;chr4_1081286_1081366 chr4_1081280_1081366 chr4_1081367_1081379;chr4_1081180_1081260 16.67 NA NA 16.67 NA NA 15.79 20.00 11.11 NA NA 14.29 16.67 NA NA 14.29 NA NA 16.67 25.00 NA NA NA NA NA NA NA NA NA NA 15.38 NA NA 23.53 NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA 18.75 NA NA NA NA NA NA NA NA NA K intron_retention wmd,E_chr2R_19432717_19433186 chr2R - chr2R_19432787_19432848 chr2R_19432786_19432787;chr2R_19432848_19432849 chr2R_19432342_19432786;chr2R_19432849_19433512 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 1.54 2.11 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention casp,EI_chr2R_11914764_11914841 chr2R - chr2R_11914769_11914841 chr2R_11914768_11914769;chr2R_11914841_11914842 chr2R_11914640_11914768;chr2R_11914842_11914941 35.64 41.67 22.73 36.00 NA 46.15 28.57 21.74 48.15 25.00 26.67 27.27 46.15 36.36 38.46 40.00 28.57 NA NA 39.13 NA 29.17 13.04 26.67 50.00 23.08 50.00 NA 20.00 30.00 47.06 NA 53.33 36.36 33.33 30.77 35.29 33.33 46.15 20.00 26.09 36.00 NA 26.32 60.00 33.33 NA 31.03 25.00 45.45 40.00 NA NA NA 38.89 36.36 40.00 41.67 K jcn_only_AA CG9992 chrX - chrX_16277201_16278620;chrX_16277545_16278620 chrX_16277559_16278620 chrX_16278621_16278914 34.22 35.00 28.07 14.68 40.00 33.33 27.27 36.75 41.57 NA 34.43 27.52 21.25 38.57 34.38 39.81 32.86 55.26 34.18 36.81 30.00 20.83 30.12 27.94 33.33 30.51 28.95 30.23 22.58 36.11 39.58 38.10 NA 33.64 35.14 14.29 34.25 45.95 28.57 37.25 45.45 33.33 32.84 28.38 17.39 45.45 42.00 NA 39.13 40.58 38.16 30.51 42.42 37.25 40.91 34.04 35.56 23.53 K intron_retention RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12931576_12931636 chr2R_12931575_12931576;chr2R_12931636_12931637 chr2R_12931465_12931575;chr2R_12931637_12932188 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 K alternative_acceptor CG10660,I_chr3L_12480796_12481182 chr3L - chr3L_12481854_12481927 chr3L_12481875_12481927 chr3L_12481928_12482060;chr3L_12481655_12481853 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 K jcn_only_AA CG15098,I_chr2R_14721883_14721980 chr2R - chr2R_14721883_14721980 chr2R_14721902_14721980 chr2R_14721981_14722049;chr2R_14721834_14721882 99.82 99.83 99.77 99.90 99.84 99.71 99.85 99.77 99.90 99.18 99.86 99.88 99.93 100.00 99.87 99.82 99.92 99.91 99.80 99.89 99.67 99.55 99.91 99.70 100.00 99.91 99.63 99.66 99.79 100.00 99.24 99.21 99.71 99.83 99.73 99.44 99.57 99.74 99.62 99.49 100.00 99.96 99.80 99.70 99.88 99.78 99.84 99.70 100.00 99.69 99.71 99.64 100.00 99.90 99.76 100.00 99.82 99.91 K intron_retention CG6672,I_chr3R_7041333_7041414,I_chr3R_7041347_7041556,RI_chr3R_7044164_7044221 chr3R - chr3R_7039090_7039178 chr3R_7039089_7039090;chr3R_7039178_7039179 chr3R_7038027_7039089;chr3R_7039179_7039598 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.49 1.40 0.00 0.50 0.00 0.00 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention stai,I_chr2L_6110225_6121773 chr2L + chr2L_6122411_6122697 chr2L_6122410_6122411;chr2L_6122697_6122698 chr2L_6122264_6122410;chr2L_6122698_6122853 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.68 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention vlc chr2R + chr2R_1589722_1590371 chr2R_1589721_1589722;chr2R_1590371_1590372 chr2R_1589612_1589721;chr2R_1590372_1590451 78.05 80.95 70.00 72.09 64.29 70.59 83.33 70.00 81.40 60.00 84.21 79.55 78.26 68.97 54.55 82.35 77.78 74.07 88.00 78.79 88.24 81.25 88.46 78.57 92.86 95.00 81.82 81.82 NA 93.33 84.00 72.73 78.57 78.05 72.22 94.12 66.67 68.18 77.78 82.14 60.00 67.65 77.78 62.50 NA 86.67 64.71 85.71 78.05 77.78 72.50 72.73 66.67 70.00 72.73 76.47 80.95 80.00 K intron_retention CG10737 chr2R + chr2R_15063853_15063920 chr2R_15063852_15063853;chr2R_15063920_15063921 chr2R_15063771_15063852;chr2R_15063921_15064028 0.28 0.00 1.70 0.91 0.00 0.66 1.61 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 1.24 0.00 0.99 0.00 0.99 0.00 0.56 1.48 0.00 2.61 2.92 5.56 7.87 4.21 0.00 1.08 0.00 0.00 0.81 1.68 1.57 0.00 0.00 2.41 0.00 3.08 0.55 0.00 0.00 2.52 0.54 0.00 3.23 0.34 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.28 2.78 K alternative_donor CG3386 chr3L - chr3L_682194_682362 chr3L_682194_682273 chr3L_681857_682193;chr3L_682363_682447 30.00 NA NA NA NA NA NA NA NA NA NA 30.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Surf4,I_chr3R_11171570_11171630,I_chr3R_11171728_11171801 chr3R - chr3R_11171739_11171801 chr3R_11171738_11171739;chr3R_11171801_11171802 chr3R_11171631_11171738;chr3R_11171802_11171901 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG9175 chr2L - chr2L_6098492_6098555 chr2L_6098491_6098492;chr2L_6098555_6098556 chr2L_6097544_6098491;chr2L_6098556_6098837 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 14.63 0.00 0.00 NA NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA NA NA 0.00 0.00 K alternative_donor CG42533,EI_chr2L_7473200_7473297,RI_chr2L_7473200_7473419,F_chr2L_7476906_7476978 chr2L - chr2L_7473200_7473656;chr2L_7473200_7473297;chr2L_7473200_7473770 chr2L_7473200_7473419 chr2L_7473100_7473199;chr2L_7473771_7473889 50.00 48.65 42.11 24.53 53.85 46.43 40.38 35.82 38.46 84.00 32.00 36.76 37.50 14.29 65.12 57.45 48.48 31.25 43.18 60.42 40.00 56.52 61.02 50.00 60.00 44.12 47.92 32.00 68.89 46.15 65.38 56.76 60.42 45.16 54.55 64.10 60.42 48.15 56.82 62.90 54.55 59.74 54.55 62.50 71.05 64.29 50.00 69.70 39.24 43.18 48.89 42.31 65.38 48.28 48.08 57.50 58.14 64.18 K intron_retention CG9344 chr2R + chr2R_16864751_16864821 chr2R_16864750_16864751;chr2R_16864821_16864822 chr2R_16864513_16864750;chr2R_16864822_16865275 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG8949,I_chrX_16971474_16971708,I_chrX_16971501_16971713 chrX - chrX_16971474_16971713 chrX_16971474_16971708 chrX_16971401_16971473;chrX_16971714_16971808 4.76 2.94 5.00 1.54 8.70 2.63 8.51 12.96 5.13 0.00 0.00 5.19 2.70 4.76 6.25 14.71 5.71 5.26 7.89 4.49 3.33 16.67 7.81 4.17 0.00 7.14 10.53 0.00 11.63 5.26 2.56 0.00 0.00 3.77 12.50 16.67 2.08 8.33 4.76 4.92 7.69 5.63 3.45 13.04 0.00 4.17 0.00 3.51 4.62 0.00 7.81 3.12 0.00 0.00 6.38 0.00 8.33 2.86 K jcn_only_AA CG3860,I_chr2R_19880382_19880479,I_chr2R_19880401_19880450,RI_chr2R_19882285_19882350 chr2R - chr2R_19880382_19880450 chr2R_19880401_19880450 chr2R_19880451_19880545;chr2R_19880314_19880381 1.41 0.00 0.00 1.89 0.00 3.85 1.96 4.48 1.41 5.56 5.88 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 3.33 3.70 NA 1.59 0.00 7.41 3.70 2.27 0.00 0.00 6.06 2.08 6.67 0.00 1.52 0.00 3.33 0.00 0.00 5.88 2.74 3.23 1.72 NA 0.00 0.00 0.00 0.00 0.00 3.03 0.00 3.85 0.00 0.00 0.00 2.22 1.96 5.26 0.00 K intron_retention Pgi chr2R - chr2R_4799762_4800109 chr2R_4799761_4799762;chr2R_4800109_4800110 chr2R_4799522_4799761;chr2R_4800110_4800692 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention dos,I_chr3L_2589746_2592161 chr3L + chr3L_2589553_2592161 chr3L_2589552_2589553;chr3L_2592161_2592162 chr3L_2589415_2589552;chr3L_2592162_2592261 1.32 2.44 2.99 2.70 0.00 0.00 3.23 3.30 5.15 0.00 0.00 0.78 4.17 1.72 2.60 2.44 0.00 2.78 3.92 1.57 1.75 3.54 1.11 1.44 2.47 3.64 2.16 4.26 0.61 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.60 1.37 0.00 2.99 0.00 1.47 0.00 0.72 0.00 0.00 2.82 1.32 0.60 2.02 0.00 2.67 0.00 0.00 1.45 0.00 K intron_retention Alr chrX + chrX_19643342_19643420 chrX_19643341_19643342;chrX_19643420_19643421 chrX_19642937_19643341;chrX_19643421_19643662 2.98 6.82 5.00 7.50 5.56 0.00 8.33 5.71 6.52 0.00 0.00 4.29 0.00 0.00 5.13 0.00 0.00 0.00 NA 0.00 4.35 3.57 5.80 1.61 6.41 8.82 8.82 14.67 4.30 2.94 3.77 2.00 0.98 4.08 0.00 8.70 2.17 5.00 2.02 3.03 5.88 2.82 0.00 0.00 1.06 2.15 1.69 0.00 5.17 3.53 5.26 0.00 0.00 2.47 0.00 3.90 0.00 3.92 K jcn_only_AD Syx4,I_chrX_2636831_2636971 chrX - chrX_2636831_2637483 chrX_2636831_2636949 chrX_2636731_2636830;chrX_2637484_2637679 0.00 0.00 1.32 0.00 0.00 1.45 1.19 1.02 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 1.71 0.00 5.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.72 0.00 1.82 0.00 0.85 0.00 1.25 0.00 2.47 2.30 0.00 0.00 0.00 1.05 0.00 0.00 4.00 K intron_retention stck,I_chr3R_4184313_4184380,I_chr3R_4184660_4184730 chr3R + chr3R_4182818_4184192 chr3R_4182817_4182818;chr3R_4184192_4184193 chr3R_4182756_4182817;chr3R_4184193_4184312 16.67 NA NA 9.09 NA NA 16.67 21.05 18.18 NA 30.77 18.52 6.67 NA 12.50 21.74 NA NA NA 19.05 NA 14.29 17.65 13.33 NA NA NA NA 33.33 NA NA NA NA 17.65 NA NA 0.00 NA 14.29 21.43 NA 15.38 NA NA NA 14.29 NA NA 22.73 12.50 NA 0.00 NA NA 15.00 NA 16.67 NA K intron_retention Eno,EI_chr2L_1727403_1727645,I_chr2L_1728229_1728302 chr2L - chr2L_1728233_1728302 chr2L_1728232_1728233;chr2L_1728302_1728303 chr2L_1728054_1728232;chr2L_1728303_1728402 5.56 16.67 6.67 5.56 NA NA 7.69 10.00 4.76 NA NA 4.44 NA NA 14.29 6.90 NA NA 16.67 10.00 NA NA 0.00 0.00 NA NA NA NA NA 0.00 3.70 NA 5.88 0.00 NA NA NA NA NA 0.00 NA 8.70 13.33 0.00 6.67 0.00 0.00 11.11 6.25 NA 0.00 NA NA 0.00 0.00 NA NA 5.56 K intron_retention CEI_chrX_17177009_17196871,CG5445,I_chrX_17196752_17196871,RI_chrX_17196772_17196871,I_chrX_17196820_17196875,I_chrX_17198393_17198730 chrX + chrX_17196541_17196871 chrX_17196540_17196541;chrX_17196871_17196872 chrX_17196536_17196540;chrX_17196872_17196971 63.64 NA 77.78 63.64 NA NA NA 70.00 43.75 NA NA 81.82 NA NA NA 78.57 NA NA NA 31.58 NA NA NA NA NA NA NA NA NA NA NA NA NA 58.33 NA NA NA NA NA NA NA 46.15 NA NA NA 87.50 NA NA 58.33 NA NA NA NA NA NA NA NA NA K jcn_only_AD Pcd,RI_chr3R_25549090_25549159 chr3R + chr3R_25549079_25549159 chr3R_25549090_25549159 chr3R_25549160_25549259;chr3R_25548990_25549078 2.33 4.26 0.00 1.03 1.89 2.04 4.71 3.70 3.82 0.00 3.92 4.12 0.00 2.33 2.90 1.64 0.00 2.08 4.08 2.48 2.63 2.74 2.04 2.00 1.82 1.96 3.00 0.00 5.17 4.62 3.33 2.67 0.00 6.02 4.08 0.00 2.83 0.93 1.16 4.90 2.56 1.85 2.78 4.88 3.85 2.88 1.50 8.00 4.59 0.89 1.87 3.39 1.75 0.00 0.00 1.98 2.06 2.15 K jcn_only_AD CG2258,I_chrX_7993650_7995126,I_chrX_7994188_7995101 chrX - chrX_7990868_7990987 chrX_7990868_7990933 chrX_7990737_7990867;chrX_7990988_7991072 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_donor Aldolase,I_chr3R_22083764_22086684 chr3R - chr3R_22082030_22082256;chr3R_22082030_22082575 chr3R_22082030_22082195 chr3R_22081992_22082029 87.50 80.00 100.00 71.43 75.00 75.00 90.00 88.89 92.86 92.86 NA 60.00 87.50 NA 100.00 88.89 75.00 100.00 100.00 91.67 100.00 85.71 87.50 87.50 80.00 100.00 90.00 80.65 30.00 54.55 90.00 83.33 100.00 90.00 80.00 100.00 100.00 100.00 85.71 41.18 84.62 84.62 83.33 100.00 50.00 100.00 83.33 83.33 88.89 90.00 100.00 83.33 NA 75.00 83.33 55.56 100.00 28.57 N jcn_only_AD RI_chrX_8608147_8608508,I_chrX_8608169_8608438,l(1)G0020 chrX - chrX_8610980_8611119 chrX_8610980_8611115 chrX_8610747_8610979;chrX_8611120_8612089 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 NA 18.29 NA 0.00 25.68 22.81 0.00 0.00 0.00 0.00 0.00 0.00 NA 20.41 21.88 0.00 0.00 0.00 0.00 0.00 26.79 17.46 14.08 22.41 NA 0.00 17.82 15.73 0.00 0.00 17.54 0.00 20.37 0.00 0.00 0.00 NA 0.00 18.18 16.35 K intron_retention yemalpha chr3R - chr3R_24946245_24946310 chr3R_24946244_24946245;chr3R_24946310_24946311 chr3R_24946005_24946244;chr3R_24946311_24946458 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 1.67 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 3.33 0.00 0.00 3.28 3.03 4.65 1.89 0.00 1.89 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 1.96 0.00 K jcn_only_AD I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781 chr3R - chr3R_17190715_17200781 chr3R_17190715_17190859 chr3R_17190579_17190714;chr3R_17200782_17200881 27.57 23.64 25.00 35.00 35.71 35.71 41.67 28.30 29.85 NA 45.83 23.81 37.04 40.91 26.92 32.50 NA 12.00 NA 16.87 20.83 48.57 30.91 34.62 20.69 NA 33.33 28.21 29.79 18.42 78.57 17.31 14.29 17.95 32.35 31.11 25.37 10.00 14.04 28.41 10.42 24.56 NA 45.45 10.34 20.99 23.21 14.06 26.83 15.56 23.33 29.17 30.23 18.87 41.94 36.36 34.78 12.28 K cassette CG2950,I_chr2L_4844647_4845086,I_chr2L_4844952_4845086 chr2L - chr2L_4844647_4845086 chr2L_4844647_4844711;chr2L_4844773_4845086 chr2L_4844712_4844772 chr2L_4844547_4844646;chr2L_4845087_4845158 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Zyx102EF,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1081261_1081364;chr4_1081261_1081398 chr4_1081261_1081366 chr4_1081180_1081260;chr4_1081399_1081402 86.73 NA NA NA NA NA 85.00 NA 88.46 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22817840_22817968 chr2L_22817839_22817840;chr2L_22817968_22817969 chr2L_22817740_22817839;chr2L_22817969_22817982 100.00 100.00 98.04 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.16 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 97.14 100.00 97.50 100.00 100.00 98.15 100.00 99.07 100.00 100.00 94.44 97.06 96.67 96.43 100.00 96.77 100.00 97.22 100.00 100.00 98.44 100.00 100.00 100.00 K alternative_last_exon CG17715,I_chr2L_22742106_22746918 chr2L + chr2L_22742365_22746918 chr2L_22742365_22742424 chr2L_22746919_22747330 chr2L_22742425_22745505 chr2L_22742297_22742364 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2436229_2439576 chr3L_2436229_2439498 chr3L_2436209_2436228;chr3L_2439577_2439583 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.05 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor cyp33,RI_chr2R_13433439_13433498,I_chr2R_13433672_13433749 chr2R + chr2R_13433439_13433498 chr2R_13433443_13433498 chr2R_13433499_13433598;chr2R_13433339_13433438 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 81.82 92.86 100.00 100.00 100.00 95.45 100.00 91.67 100.00 100.00 93.94 92.86 92.86 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 95.65 96.43 100.00 100.00 93.75 94.12 94.74 95.83 100.00 100.00 100.00 92.86 100.00 96.97 100.00 95.83 97.30 96.15 95.24 100.00 91.67 95.00 87.50 95.24 96.43 96.77 97.30 N cassette Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16107821_16110644;chr3L_16108931_16110644 chr3L_16108931_16109131,chr3L_16107821_16109131;chr3L_16109342_16110644 chr3L_16109132_16109341 chr3L_16107721_16107820;chr3L_16110645_16111208 96.68 95.61 98.23 95.71 93.41 91.59 90.83 96.38 97.54 98.78 92.39 96.68 95.79 96.63 99.08 98.35 93.75 98.04 98.82 94.95 95.74 92.69 96.97 94.03 94.74 96.00 96.24 98.00 99.44 97.33 97.70 98.21 97.58 96.95 97.30 91.79 94.46 95.62 96.73 98.15 93.33 96.43 94.94 95.65 96.82 96.97 98.78 98.00 96.24 95.88 98.03 97.75 98.99 98.70 97.41 93.14 97.30 95.81 K intron_retention proPO-A1 chr2R - chr2R_13776219_13776292 chr2R_13776218_13776219;chr2R_13776292_13776293 chr2R_13775585_13776218;chr2R_13776293_13776787 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 K intron_retention Stat92E,I_chr3R_16367780_16376442,I_chr3R_16367780_16377802,I_chr3R_16367815_16368548,att-ORFB chr3R - chr3R_16367276_16367401 chr3R_16367275_16367276;chr3R_16367401_16367402 chr3R_16366245_16367275;chr3R_16367402_16367469 0.00 0.00 0.00 2.86 0.00 0.00 6.67 0.00 2.50 0.00 5.88 1.67 0.00 0.00 2.67 0.00 0.00 20.79 0.00 0.00 0.00 3.33 1.27 0.00 3.77 1.67 2.56 1.67 0.00 2.86 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.61 0.00 2.26 0.00 0.00 0.00 0.00 0.00 1.94 0.87 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG15012 chr3L - chr3L_4291619_4291686 chr3L_4291624_4291686 chr3L_4291687_4291816;chr3L_4291609_4291618 98.81 100.00 98.89 100.00 98.63 98.25 98.31 96.77 99.38 100.00 98.59 97.96 100.00 98.55 96.15 97.94 98.33 100.00 98.81 97.45 100.00 98.90 98.89 98.82 100.00 98.82 100.00 100.00 100.00 95.24 98.17 100.00 97.87 99.04 100.00 100.00 98.44 97.96 98.63 100.00 98.25 98.64 98.25 98.46 97.96 96.25 98.99 100.00 99.25 97.53 98.53 98.44 98.25 98.84 100.00 98.92 97.54 100.00 K intron_retention CG18659,E_chr2R_5011363_5019110,I_chr2R_5016147_5016997 chr2R - chr2R_5014668_5014923 chr2R_5014667_5014668;chr2R_5014923_5014924 chr2R_5014532_5014667;chr2R_5014924_5015382 90.45 NA NA 91.67 NA NA 93.33 100.00 93.33 NA NA 75.00 88.89 NA NA NA NA NA NA NA NA NA 88.89 90.91 NA NA 91.67 100.00 NA NA 87.50 NA NA 87.50 NA NA 90.00 NA NA 100.00 NA NA NA 90.91 NA NA NA 88.89 NA NA 76.92 NA NA NA 87.50 NA NA NA K intron_retention tral,I_chr3L_12512171_12512251 chr3L + chr3L_12511768_12511832 chr3L_12511767_12511768;chr3L_12511832_12511833 chr3L_12511538_12511767;chr3L_12511833_12512170 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 2.56 1.70 0.86 0.00 0.00 0.00 0.00 0.66 0.00 0.29 0.00 0.33 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32529 chrX + chrX_19794006_19794648 chrX_19794005_19794006;chrX_19794648_19794649 chrX_19793298_19794005;chrX_19794649_19795521 17.14 8.51 21.74 17.14 30.77 26.92 22.22 28.21 32.04 4.17 17.65 22.54 21.43 19.05 36.36 27.27 26.32 30.43 31.82 19.39 33.33 4.72 8.00 11.11 10.94 39.13 19.70 25.40 17.14 10.29 25.00 15.79 6.56 31.58 12.73 4.82 12.68 10.00 11.11 8.14 12.00 23.66 35.29 12.07 17.24 10.00 0.00 17.78 22.22 13.04 10.14 10.00 0.00 10.71 24.00 11.76 4.00 10.53 K alternative_acceptor Dscam,I_chr2R_3212243_3212342,F_chr2R_3219886_3228832,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3209152_3210064 chr2R_3209155_3210064 chr2R_3210065_3210223;chr2R_3209119_3209151 87.50 91.67 90.00 91.30 77.78 66.67 NA 86.67 86.21 NA NA 88.24 NA 75.00 90.00 90.00 100.00 NA 100.00 76.92 87.50 91.67 82.35 91.67 NA NA 85.71 90.00 81.25 87.50 93.75 75.00 86.67 91.67 NA 75.00 83.33 90.91 92.86 86.21 NA 87.50 87.50 90.00 88.89 76.47 81.25 86.67 82.35 90.00 81.82 63.64 NA NA 75.00 92.31 76.47 NA K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,RI_chr3R_27801288_27801517,I_chr3R_27801288_27801596 chr3R - chr3R_27784850_27805244 chr3R_27784850_27798223;chr3R_27798276_27801169;chr3R_27801288_27801517;chr3R_27801688_27805244 chr3R_27798224_27798275;chr3R_27801170_27801287;chr3R_27801518_27801687 chr3R_27784757_27784849;chr3R_27805245_27805341 60.00 75.00 75.00 88.89 66.67 40.00 16.67 45.45 55.56 NA 75.00 81.82 66.67 60.00 60.00 55.56 NA 50.00 50.00 62.50 60.00 NA NA NA NA 50.00 25.00 NA NA NA 80.00 NA 40.00 75.00 NA NA NA NA 66.67 60.00 NA 50.00 66.67 NA NA 100.00 NA 60.00 60.00 NA 66.67 NA NA NA 50.00 NA NA 66.67 K intron_retention betaTub56D,I_chr2R_15336252_15336648,I_chr2R_15336252_15337409,I_chr2R_15336252_15338966 chr2R - chr2R_15336252_15338937 chr2R_15336251_15336252;chr2R_15338937_15338938 chr2R_15336154_15336251;chr2R_15338938_15339127 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.16 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.06 0.00 0.05 0.00 0.16 0.16 0.00 0.30 0.58 0.23 0.00 0.12 0.00 0.06 0.00 0.00 0.14 0.09 0.06 0.00 0.07 0.00 0.09 0.07 0.13 0.00 0.28 0.00 0.09 0.07 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.06 0.00 N alternative_donor Uhg3,noncoding_4006,E_chr2L_20647810_20648188,R_chr2L_20648002_20648194,snoRNA:Me28S-C2645b chr2L + chr2L_20647789_20648188 chr2L_20648014_20648188 chr2L_20648189_20648248;chr2L_20647710_20647788 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 34.29 52.63 100.00 100.00 100.00 100.00 100.00 100.00 59.09 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 29.41 100.00 100.00 K alternative_donor CG4065,RI_chr2R_20024231_20024292,I_chr2R_20024873_20024921 chr2R - chr2R_20024231_20024292 chr2R_20024231_20024290 chr2R_20024131_20024230;chr2R_20024293_20024392 94.12 87.50 100.00 93.75 90.00 NA 92.31 100.00 94.74 NA 100.00 95.65 100.00 100.00 88.89 90.00 100.00 100.00 NA 94.44 NA 90.91 94.12 94.74 100.00 100.00 93.75 100.00 100.00 90.00 NA 90.00 100.00 100.00 90.91 100.00 100.00 NA 94.12 89.47 88.89 92.31 NA 100.00 90.91 91.67 91.67 92.86 95.00 90.00 94.74 NA 87.50 90.91 92.31 90.00 100.00 100.00 K intron_retention Exp6,RI_chrX_365966_366158,I_chrX_369347_369797 chrX - chrX_365945_366158 chrX_365944_365945;chrX_366158_366159 chrX_365866_365944;chrX_366159_366258 0.00 0.00 NA 8.82 0.00 NA 3.85 0.00 5.26 NA NA 8.33 0.00 0.00 0.00 5.00 0.00 0.00 0.00 5.41 NA 0.00 0.00 0.00 3.57 0.00 6.67 NA 0.00 0.00 0.00 NA 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 5.56 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3073479_3083732 chr3L_3073479_3079985 chr3L_3073278_3073478 2.36 NA 11.11 0.00 NA 0.00 7.14 5.88 3.03 NA NA 2.56 NA 0.00 0.00 0.00 8.00 NA 3.12 2.22 NA 0.00 0.00 8.00 NA 4.00 2.50 NA 0.00 0.00 NA 4.76 0.00 8.47 NA NA NA NA 0.00 3.51 0.00 3.57 8.00 NA NA 4.55 NA 0.00 2.63 NA 0.00 NA NA NA 0.00 NA NA 1.43 K intron_retention RN-tre chr2R - chr2R_9873550_9875877 chr2R_9873549_9873550;chr2R_9875877_9875878 chr2R_9873495_9873549;chr2R_9875878_9875942 98.36 100.00 96.00 98.11 100.00 100.00 100.00 97.83 98.25 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.21 96.55 98.65 97.73 97.78 96.00 100.00 97.44 100.00 100.00 97.56 100.00 96.67 96.00 97.67 97.50 100.00 98.36 97.44 98.18 96.55 100.00 100.00 100.00 100.00 100.00 97.83 100.00 97.37 95.00 96.97 97.62 100.00 95.83 100.00 96.97 97.14 100.00 94.29 K alternative_donor CG6498,EI_chr3L_15559245_15561305,chr3L_15559614_15559828.0,I_chr3L_15561224_15561305 chr3L + chr3L_15559254_15561305 chr3L_15559289_15561305 chr3L_15561306_15561405;chr3L_15559179_15559253 4.00 0.00 0.00 0.00 0.00 13.33 0.00 3.23 2.56 NA 0.00 2.70 0.00 NA NA 4.00 0.00 NA 7.14 5.26 0.00 6.25 11.63 8.33 14.29 NA 12.00 10.00 20.00 0.00 0.00 NA 10.53 8.70 NA 0.00 16.67 3.85 4.76 7.41 NA 4.35 NA NA NA NA NA 6.67 0.00 NA 4.55 NA NA NA 0.00 NA NA NA K cassette bip2,RI_chr4_481674_487126,RI_chr4_483128_487126,RI_chr4_483144_483680,RI_chr4_486609_487126 chr4 - chr4_483128_487126 chr4_483128_483680;chr4_485367_487126 chr4_483681_485366 chr4_483044_483127;chr4_487127_487226 90.00 95.83 90.32 52.17 83.33 85.71 98.33 93.94 95.00 85.71 84.62 94.44 76.92 89.19 84.85 92.06 96.55 84.21 90.91 79.66 90.00 92.31 84.00 82.61 85.71 90.00 95.83 90.00 76.92 94.12 97.37 88.89 91.67 100.00 89.47 94.12 85.71 90.00 92.31 90.91 100.00 89.66 100.00 96.55 87.50 94.44 93.33 100.00 100.00 88.24 89.66 88.24 81.82 90.00 97.22 92.86 86.67 94.12 K multi_cassette Jupiter,I_chr3R_7417030_7419354,I_chr3R_7417630_7417716,I_chr3R_7418347_7445425,RI_chr3R_7442793_7445425 chr3R - chr3R_7417030_7419354 chr3R_7417030_7418088;chr3R_7418347_7419043;chr3R_7419077_7419354 chr3R_7418089_7418346;chr3R_7419044_7419076 chr3R_7416930_7417029;chr3R_7419355_7419454 22.22 NA NA 2.61 NA NA 10.00 NA 25.00 NA NA 89.29 NA NA NA NA NA NA NA 46.15 NA 3.57 NA NA NA NA NA NA 8.33 NA NA NA 9.09 33.33 NA NA NA NA NA NA 18.18 11.11 NA NA 28.57 22.22 50.00 16.67 25.00 NA NA NA NA NA NA NA NA 28.57 K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27761114_27762991,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27707594_27801169 chr3R_27707594_27757793;chr3R_27758337_27784756;chr3R_27784850_27795477;chr3R_27795508_27801169 chr3R_27757794_27758336;chr3R_27784757_27784849;chr3R_27795478_27795507 chr3R_27707494_27707593;chr3R_27801170_27801219 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 75.00 NA NA 100.00 100.00 NA NA 100.00 80.00 NA 66.67 NA 100.00 100.00 66.67 NA NA 66.67 100.00 NA NA 80.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 66.67 NA 66.67 100.00 NA NA 100.00 66.67 100.00 100.00 NA 100.00 NA 66.67 NA 100.00 66.67 K intron_retention CG4699 chr3R + chr3R_11624190_11624442 chr3R_11624189_11624190;chr3R_11624442_11624443 chr3R_11623809_11624189;chr3R_11624443_11624758 51.22 39.29 61.11 50.00 61.11 57.89 77.14 68.97 62.00 37.04 72.22 51.22 73.33 80.95 70.83 72.00 58.82 75.00 63.16 68.75 66.67 51.22 32.81 38.89 41.38 47.06 41.51 43.75 44.12 53.66 65.00 50.00 50.00 74.07 39.13 19.44 42.31 31.03 39.02 46.15 44.44 59.09 86.67 48.48 58.33 54.29 42.86 52.54 73.53 28.95 39.53 41.67 38.24 28.57 82.61 42.11 47.37 60.00 K intron_retention MEP-1,CG42245,noncoding_10195,CG1143 chr3L + chr3L_2633810_2637067 chr3L_2633809_2633810;chr3L_2637067_2637068 chr3L_2633538_2633809;chr3L_2637068_2637217 5.68 0.00 9.68 6.67 0.00 9.68 3.33 5.68 5.56 6.90 4.65 6.85 4.76 4.00 9.68 8.89 11.43 6.25 5.00 4.29 6.45 12.20 4.05 2.33 0.00 6.45 6.67 6.25 4.08 7.14 8.89 16.67 4.35 8.82 4.44 5.71 3.57 6.67 5.26 3.85 4.65 3.80 5.26 4.17 12.00 8.93 8.51 4.44 8.24 10.81 2.74 3.23 3.23 0.00 5.41 9.68 13.79 6.82 K cassette Tsp26A chr2L + chr2L_6001084_6001476 chr2L_6001084_6001158;chr2L_6001270_6001476 chr2L_6001159_6001269 chr2L_6000805_6001083;chr2L_6001477_6001593 2.74 0.00 0.00 1.27 3.33 3.12 4.69 0.00 1.28 0.00 3.33 4.00 0.00 0.00 2.63 6.15 0.00 0.00 0.00 3.28 3.45 7.84 2.13 3.03 0.00 2.78 4.65 11.76 4.76 3.23 3.23 NA 4.17 2.00 4.17 4.17 2.86 6.67 0.00 2.56 3.85 3.08 0.00 2.33 NA 7.14 NA 2.70 1.69 0.00 0.00 0.00 NA 0.00 4.00 NA 5.56 0.00 K intron_retention BicD,Aac11,I_chr2L_17475843_17475910 chr2L - chr2L_17475355_17475534 chr2L_17475354_17475355;chr2L_17475534_17475535 chr2L_17474918_17475354;chr2L_17475535_17475615 94.12 97.92 92.50 92.47 86.96 97.78 95.45 91.84 95.29 96.15 95.65 92.22 98.11 96.23 94.59 94.02 89.47 92.11 95.59 90.22 95.65 96.88 95.92 90.48 95.83 94.12 97.56 92.68 77.59 95.56 95.00 92.94 93.22 91.67 91.84 90.57 84.62 95.24 96.77 93.64 88.89 95.56 88.33 95.35 74.36 86.18 98.08 80.69 94.69 94.23 96.08 93.55 96.15 94.12 92.16 97.78 97.56 87.31 K intron_retention I_chr2L_71805_74902,galectin,I_chr2L_72082_75077,RI_chr2L_72978_75077,RI_chr2L_73693_75077,RI_chr2L_74573_75077 chr2L + chr2L_74573_74902 chr2L_74572_74573;chr2L_74902_74903 chr2L_74473_74572;chr2L_74903_75002 6.25 NA NA 6.67 NA NA 16.67 5.88 16.67 NA NA 5.00 6.25 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 7.69 NA NA NA NA NA NA NA K jcn_only_AD CG10737 chr2R + chr2R_15062754_15063692;chr2R_15062814_15063692 chr2R_15062592_15063692 chr2R_15063693_15063852;chr2R_15062387_15062591 0.85 1.46 1.87 2.51 3.01 1.14 0.51 1.98 0.82 0.98 1.72 0.00 0.00 0.60 0.00 0.00 3.66 1.32 0.58 0.40 1.36 1.33 0.62 0.85 0.00 0.00 1.34 13.14 2.55 0.45 0.34 0.52 0.00 0.37 1.27 0.93 0.84 1.39 2.44 2.55 1.37 0.78 0.68 0.00 0.99 1.34 1.43 0.73 0.55 1.19 0.98 0.74 0.90 0.81 0.89 0.00 0.81 0.55 K intron_retention tex chr3R - chr3R_4133563_4133617 chr3R_4133562_4133563;chr3R_4133617_4133618 chr3R_4133082_4133562;chr3R_4133618_4134152 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 2.44 NA 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 NA 0.00 2.44 0.00 0.00 0.00 NA 4.65 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 4.00 0.00 0.00 NA K jcn_only_AA CG9932,I_chr2L_13031395_13035824 chr2L - chr2L_13028540_13028867 chr2L_13028552_13028867 chr2L_13028868_13029642;chr2L_13027809_13028539 64.02 68.09 71.15 65.31 67.57 74.29 53.66 71.19 60.92 68.75 72.73 55.71 53.57 52.83 59.65 68.42 79.41 57.14 64.10 59.04 68.00 63.19 63.93 80.00 73.33 50.00 69.70 68.24 55.56 53.70 73.33 NA 59.26 63.49 64.29 68.75 60.27 66.67 66.13 62.50 78.12 56.07 58.54 66.67 51.61 63.41 65.79 58.14 60.53 55.88 63.41 65.71 59.38 68.18 60.34 74.07 66.67 51.92 K intron_retention CG3493 chr2R - chr2R_19264143_19264353 chr2R_19264142_19264143;chr2R_19264353_19264354 chr2R_19264055_19264142;chr2R_19264354_19264643 2.33 0.00 5.00 0.00 0.00 0.00 1.82 3.08 2.35 3.57 0.00 0.00 0.00 4.65 0.00 3.92 9.09 3.45 5.56 3.12 3.23 2.00 0.00 1.72 0.00 0.00 2.86 3.70 5.88 0.00 8.00 0.00 0.00 1.52 3.92 3.92 1.47 0.00 2.78 4.62 6.25 7.69 2.70 0.00 0.00 2.33 0.00 8.62 3.03 0.00 2.60 2.56 0.00 0.00 3.85 3.03 0.00 0.00 K alternative_donor Lmpt,RI_chr3L_16884531_16889334,I_chr3L_16904980_16905228 chr3L + chr3L_16858538_16859765;chr3L_16858527_16859765 chr3L_16858505_16859765 chr3L_16859766_16860046;chr3L_16858440_16858504 33.33 NA NA NA NA NA NA NA 33.33 NA NA 30.00 NA NA NA NA NA NA NA 14.29 NA 40.00 45.45 42.86 NA NA NA NA NA NA 42.86 NA NA 16.67 NA NA NA NA NA NA NA NA NA 22.22 NA 33.33 NA 36.36 14.29 NA 25.00 36.36 NA NA NA 16.67 NA NA N jcn_only_AD RpS27A chr2L + chr2L_10410169_10410240;chr2L_10410052_10410240 chr2L_10410157_10410240 chr2L_10410241_10410467;chr2L_10409711_10410051 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 K intron_retention Reg-2 chr3L - chr3L_606286_606342 chr3L_606285_606286;chr3L_606342_606343 chr3L_606197_606285;chr3L_606343_606793 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 1.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 6.03 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8331,RI_chr2R_10058673_10059794,I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10058228_10059794 chr2R_10058227_10058228;chr2R_10059794_10059795 chr2R_10058019_10058227;chr2R_10059795_10059894 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.31 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 1.80 0.00 0.00 0.00 0.00 0.00 1.52 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 1.30 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor rho-7,noncoding_6143 chr2R - chr2R_7875004_7875506 chr2R_7875007_7875506 chr2R_7875507_7875801;chr2R_7874791_7875003 97.06 96.55 96.67 94.12 95.00 100.00 96.30 96.97 97.78 100.00 100.00 96.55 95.24 95.24 96.15 100.00 94.44 100.00 94.12 96.55 100.00 96.30 97.14 100.00 95.83 94.12 96.77 90.48 95.83 96.77 100.00 95.83 97.73 100.00 100.00 100.00 97.56 100.00 98.11 100.00 95.45 100.00 94.44 100.00 97.06 97.14 97.37 96.55 97.37 97.14 97.30 95.83 96.15 100.00 96.43 94.29 100.00 100.00 K jcn_only_AA hook,CG31800 chr2L - chr2L_19031229_19031292 chr2L_19031242_19031292 chr2L_19031293_19031361;chr2L_19031164_19031228 99.38 100.00 100.00 98.76 100.00 100.00 100.00 100.00 98.28 100.00 99.06 98.75 100.00 100.00 97.44 99.24 98.59 100.00 99.07 99.52 100.00 97.87 100.00 98.91 97.40 97.87 99.19 100.00 99.20 98.82 99.05 98.48 100.00 99.24 100.00 98.33 98.99 98.94 98.59 100.00 100.00 98.88 100.00 100.00 100.00 98.58 99.38 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 99.22 98.57 98.80 K intron_retention CG9684 chr3R - chr3R_4186229_4186285 chr3R_4186228_4186229;chr3R_4186285_4186286 chr3R_4186023_4186228;chr3R_4186286_4186464 11.65 10.00 15.79 60.00 0.00 0.00 16.13 20.00 11.11 NA 0.00 17.50 0.00 12.50 13.79 20.00 0.00 11.76 12.50 15.22 9.09 12.50 27.59 9.38 14.29 37.50 0.00 0.00 NA NA 0.00 NA NA 11.76 NA 35.71 10.71 0.00 0.00 8.70 NA 16.67 14.29 7.14 NA 16.67 9.09 NA 10.53 7.41 5.26 11.54 11.76 7.41 12.50 11.11 12.90 21.43 K jcn_only_AD CG40228,noncoding_14406,RI_chr3LHet_2190419_2190470 chr3LHet - chr3LHet_2190419_2190556;chr3LHet_2190419_2190563;chr3LHet_2190419_2190470;chr3LHet_2190419_2190561 chr3LHet_2190419_2190548 chr3LHet_2190319_2190418;chr3LHet_2190564_2190570 69.46 68.04 67.68 61.50 76.47 75.58 50.84 66.12 70.49 NA 84.85 69.15 75.93 72.81 77.50 69.46 74.42 67.82 71.53 64.25 74.07 76.19 74.19 68.06 64.71 75.44 69.66 70.59 69.35 71.79 75.68 65.22 61.36 73.08 72.18 63.22 NA 71.11 76.92 72.07 57.66 70.67 73.04 62.50 67.92 68.62 69.23 63.71 67.46 59.09 68.10 60.00 74.03 71.74 71.17 60.00 68.29 64.38 K intron_retention CG11360,noncoding_20761,I_chr4_701221_705206,I_chr4_705000_705206 chr4 + chr4_701221_706194 chr4_701220_701221;chr4_706194_706195 chr4_701121_701220;chr4_706195_706518 100.00 90.91 100.00 100.00 100.00 94.44 96.88 100.00 97.62 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA 91.67 100.00 100.00 100.00 100.00 NA NA 100.00 NA 97.37 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA K jcn_only_AA DnaJ-H,EI_chr2L_13164741_13164824,Sfmbt chr2L - chr2L_13164741_13164824 chr2L_13164763_13164824 chr2L_13164825_13164923;chr2L_13164641_13164740 92.00 NA NA 100.00 NA NA 92.59 NA 80.95 NA NA NA NA NA NA NA NA NA NA 91.30 NA NA 96.67 NA NA NA 95.00 NA NA NA NA NA NA NA 90.00 NA NA NA NA 95.83 NA 93.94 NA NA NA 79.17 NA 92.00 NA 85.71 82.61 NA NA NA NA NA NA NA K intron_retention Pep,I_chr3L_17637180_17637918 chr3L - chr3L_17634356_17636462 chr3L_17634355_17634356;chr3L_17636462_17636463 chr3L_17634126_17634355;chr3L_17636463_17636826 2.15 1.69 4.59 6.77 4.88 4.72 8.86 6.35 4.69 1.68 4.17 2.48 6.45 3.53 1.98 9.78 6.10 0.93 4.88 2.34 7.46 1.94 2.27 2.04 0.95 4.21 3.98 3.38 0.00 2.36 3.12 1.36 1.01 3.68 2.91 0.00 1.26 1.58 1.08 1.68 0.00 2.03 4.21 1.92 1.02 1.46 2.07 1.76 4.04 3.11 2.15 0.70 0.53 0.89 7.09 0.84 2.08 0.90 K alternative_last_exon Nak chr2L - chr2L_18960681_18962884 chr2L_18962792_18962884,chr2L_18962834_18962884 chr2L_18957720_18960680 chr2L_18961111_18962791 chr2L_18962885_18963115 46.15 42.86 53.85 88.46 37.50 45.45 64.29 62.96 55.56 10.00 85.71 57.69 46.15 53.85 41.67 67.74 50.00 41.67 53.33 50.00 62.50 25.00 43.48 44.44 53.85 50.00 50.00 61.54 36.36 35.71 46.15 41.67 30.77 56.67 41.67 40.00 37.50 41.67 30.77 46.15 42.86 51.72 58.33 38.89 28.57 45.00 47.06 37.50 56.67 52.38 45.45 63.64 40.00 46.15 46.15 50.00 56.25 37.50 K intron_retention CG32243 chr3L - chr3L_4540654_4540712 chr3L_4540653_4540654;chr3L_4540712_4540713 chr3L_4540571_4540653;chr3L_4540713_4540779 0.00 0.00 1.41 2.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.67 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 K intron_retention CG5116,I_chr3R_21310025_21310086 chr3R + chr3R_21310025_21310082 chr3R_21310024_21310025;chr3R_21310082_21310083 chr3R_21309925_21310024;chr3R_21310083_21310523 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention CRMP,I_chr3R_1401648_1403314 chr3R + chr3R_1401648_1402757 chr3R_1401647_1401648;chr3R_1402757_1402758 chr3R_1401548_1401647;chr3R_1402758_1402947 69.23 NA NA 40.91 NA NA NA 50.00 NA 63.64 NA NA 77.78 NA 87.50 NA NA NA NA 71.43 NA NA 66.67 72.22 NA NA 58.33 NA NA NA NA NA NA NA NA NA 80.00 69.23 70.59 66.67 NA 63.64 NA NA NA 73.33 NA 54.55 71.43 46.15 90.91 NA NA NA NA 41.67 NA 77.78 K alternative_acceptor egr,I_chr2R_5970832_5970930,I_chr2R_5970999_5971058 chr2R + chr2R_5970832_5970930;chr2R_5970832_5970926 chr2R_5970832_5970908 chr2R_5970767_5970831;chr2R_5970931_5970998 73.51 69.54 74.36 78.79 71.68 70.25 79.41 76.70 74.37 68.75 68.27 72.87 76.32 75.24 73.65 77.45 71.13 76.19 75.21 75.23 74.55 69.57 72.77 70.98 76.29 77.78 64.44 80.00 71.56 73.21 75.21 74.68 75.56 75.93 73.77 64.10 66.30 69.92 71.81 70.56 79.57 73.11 72.04 73.91 71.43 73.53 73.51 74.23 76.56 66.83 70.65 71.43 70.76 70.95 78.77 73.20 71.43 74.40 K alternative_acceptor CG11403,I_chrX_1132012_1132060 chrX - chrX_1131997_1132060 chrX_1132012_1132060 chrX_1132061_1132160;chrX_1131912_1131996 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 2.70 NA 0.00 0.00 0.00 NA NA NA NA NA NA NA NA 6.67 0.00 NA NA NA NA 0.00 0.00 NA 3.33 NA NA 0.00 NA NA NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA K alternative_donor CG14225,I_chrX_19569702_19569879,I_chrX_19573364_19573474 chrX - chrX_19567504_19568543 chrX_19567504_19568537 chrX_19566669_19567503;chrX_19568544_19569688 19.12 18.50 22.15 21.09 20.83 20.90 24.32 20.37 19.06 19.10 18.11 18.18 15.79 19.83 16.58 17.21 20.00 20.47 17.99 22.92 17.28 24.42 20.47 19.90 18.60 23.85 23.49 19.23 16.67 17.46 19.65 19.20 15.71 23.88 22.58 18.07 17.49 22.39 19.12 16.74 21.35 18.39 18.42 19.20 16.97 18.54 18.32 18.40 20.28 23.57 22.14 19.28 16.67 24.73 17.01 17.82 17.86 13.27 K intron_retention CG30115,E_chr2R_14444407_14448590 chr2R - chr2R_14448674_14498185 chr2R_14448673_14448674;chr2R_14498185_14498186 chr2R_14448591_14448673;chr2R_14498186_14498559 0.00 NA NA 21.43 NA NA NA NA 0.00 NA NA 0.00 NA NA NA 7.69 NA NA NA 17.65 NA 17.39 NA NA NA NA NA 0.00 0.00 NA 29.41 NA 0.00 12.50 NA NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 6.67 NA 0.00 NA NA NA 0.00 NA NA 0.00 K alternative_last_exon CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_264375_265043;chr4_264375_265805 chr4_264375_264441 chr4_265044_265460;chr4_265806_266712 chr4_264442_264510 chr4_264260_264374 0.00 0.00 2.13 0.00 2.94 0.00 5.08 1.00 0.86 15.38 12.12 0.00 2.17 0.00 0.00 1.67 0.00 14.29 1.47 3.09 11.76 4.00 3.45 0.00 0.00 0.00 3.12 0.00 0.00 0.00 1.32 3.33 3.70 1.08 4.35 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 5.13 1.03 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 K jcn_only_AA CG11873,I_chr3R_24900749_24922953 chr3R + chr3R_24923583_24923691 chr3R_24923583_24923688 chr3R_24923274_24923582;chr3R_24923692_24927151 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 97.62 100.00 NA 100.00 100.00 100.00 100.00 95.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 96.00 100.00 98.18 95.45 100.00 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 96.30 NA NA 100.00 NA NA NA K jcn_only_AD Sdc,RI_chr2R_17286086_17286391,I_chr2R_17286089_17286391,I_chr2R_17286819_17367595,I_chr2R_17324594_17367595 chr2R - chr2R_17286086_17286679 chr2R_17286086_17286391 chr2R_17286037_17286085;chr2R_17286680_17286818 1.45 0.00 0.00 3.91 0.00 0.00 1.61 5.10 0.68 0.00 21.88 0.00 0.00 0.00 1.59 3.85 4.08 0.00 0.00 2.04 10.42 1.67 1.27 1.54 1.45 0.00 0.00 3.70 5.06 1.19 0.00 0.00 2.76 1.00 0.00 3.51 0.00 1.52 0.00 2.47 5.45 0.97 0.00 1.77 2.41 1.06 1.67 1.66 0.00 3.45 1.35 1.92 3.53 0.00 1.49 0.00 1.82 1.90 K jcn_only_AA Dap160,I_chr2L_21139943_21140007 chr2L - chr2L_21138359_21138711 chr2L_21138362_21138711 chr2L_21138712_21139602;chr2L_21138113_21138358 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 95.65 98.44 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.91 98.46 100.00 NA 100.00 100.00 97.10 98.78 100.00 98.28 100.00 100.00 100.00 100.00 100.00 98.15 98.51 98.84 96.34 100.00 NA 100.00 100.00 98.92 100.00 99.12 98.11 100.00 100.00 94.44 97.14 98.21 100.00 98.46 100.00 98.57 K cassette Fer1HCH,I_chr3R_26212319_26213496,I_chr3R_26212319_26212460,I_chr3R_26213132_26213185 chr3R - chr3R_26212319_26213185 chr3R_26212319_26212439;chr3R_26212551_26213185 chr3R_26212440_26212550 chr3R_26212219_26212318;chr3R_26213186_26213272 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.08 0.11 0.15 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.10 0.08 0.00 0.00 0.21 0.24 0.00 0.20 0.11 0.43 0.19 0.00 0.00 0.19 0.20 0.12 0.08 0.12 0.31 0.14 0.18 0.00 0.37 0.17 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 K jcn_only_AD norpA,I_chrX_4219265_4219380 chrX + chrX_4254739_4255998 chrX_4255142_4255998 chrX_4255999_4256951;chrX_4254649_4254738 3.33 NA NA 0.00 NA 13.04 NA 3.03 2.70 NA NA NA NA NA NA 3.33 NA NA 0.00 5.41 NA NA 4.35 NA NA 6.90 NA NA NA 0.00 2.94 NA 3.85 6.45 4.00 5.00 NA NA NA 0.00 0.00 0.00 NA 5.00 9.52 3.12 NA 11.76 8.33 NA NA NA NA NA 0.00 NA NA 2.78 K intron_retention Cks30A chr2L + chr2L_9331111_9331182 chr2L_9331110_9331111;chr2L_9331182_9331183 chr2L_9330757_9331110;chr2L_9331183_9332126 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 1.82 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.45 0.00 0.00 0.00 NA 36.36 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Csk,I_chr3R_7463337_7463512,I_chr3R_7468928_7472509 chr3R - chr3R_7461302_7461422 chr3R_7461353_7461422 chr3R_7461423_7461691;chr3R_7461191_7461301 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.45 100.00 99.65 100.00 100.00 100.00 100.00 100.00 100.00 99.59 99.43 99.68 100.00 100.00 99.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.48 100.00 100.00 100.00 K intron_retention Ant2,sesB chrX - chrX_10676129_10676205 chrX_10676128_10676129;chrX_10676205_10676206 chrX_10675057_10676128;chrX_10676206_10676333 0.00 0.10 0.12 0.00 0.00 0.29 0.00 0.13 0.07 0.00 0.00 0.16 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.23 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.16 0.00 0.15 0.18 0.00 0.00 0.00 0.00 0.00 0.08 0.25 0.00 0.16 0.00 0.11 0.14 0.00 0.00 0.00 N intron_retention capt,I_chr2L_1156009_1158078,I_chr2L_1163632_1163759 chr2L - chr2L_1157987_1158078 chr2L_1157986_1157987;chr2L_1158078_1158079 chr2L_1157922_1157986;chr2L_1158079_1158178 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA 50.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA K intron_retention CG1316 chr3L + chr3L_4285921_4286171 chr3L_4285920_4285921;chr3L_4286171_4286172 chr3L_4285847_4285920;chr3L_4286172_4286865 7.69 10.23 5.97 4.72 7.27 8.47 6.25 8.46 6.22 9.72 5.77 7.32 10.00 11.59 7.37 10.00 7.84 10.94 9.52 6.76 10.42 3.45 9.78 6.98 8.06 5.66 12.82 8.57 12.12 7.80 6.94 4.64 3.12 8.27 6.67 10.26 9.78 9.59 9.71 6.10 3.66 6.67 9.43 7.69 5.19 7.96 11.69 4.28 7.59 6.86 9.41 4.00 5.06 13.51 13.16 6.98 7.32 2.91 K alternative_donor CG30499,I_chr2R_3452363_3452552 chr2R - chr2R_3452363_3452562 chr2R_3452363_3452552 chr2R_3452263_3452362;chr2R_3452563_3452652 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.47 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.34 0.00 0.46 0.53 0.00 0.00 0.00 0.00 0.00 0.58 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.41 0.45 0.00 0.64 0.00 0.50 0.61 0.00 0.00 0.00 0.00 0.89 0.53 0.55 0.00 0.92 0.00 0.77 K jcn_only_AD Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2362674;chr2L_2361586_2362590 chr2L_2361586_2362869 chr2L_2361486_2361585;chr2L_2362870_2362919 0.00 NA NA 0.00 NA NA NA 4.17 10.26 NA NA 3.57 NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG12428,I_chr3R_23531574_23532266 chr3R - chr3R_23531574_23532276 chr3R_23532224_23532276 chr3R_23532277_23532366;chr3R_23531474_23531573 20.00 NA NA 10.00 NA NA 20.00 NA 22.22 NA NA 22.22 NA NA NA NA NA NA NA 7.69 NA 37.50 12.50 NA NA NA 20.00 12.50 NA NA NA NA NA NA NA NA NA NA NA 20.00 NA 12.50 NA NA NA NA NA NA 10.00 NA 33.33 NA NA NA NA NA NA NA K intron_retention CG17996,I_chr2L_16730837_16730908,RI_chr2L_16731891_16731942 chr2L - chr2L_16730856_16730908 chr2L_16730855_16730856;chr2L_16730908_16730909 chr2L_16730455_16730855;chr2L_16730909_16731008 17.65 18.52 15.00 20.41 7.02 12.82 16.92 14.81 11.11 14.29 12.07 12.05 14.29 11.76 16.33 16.28 8.70 15.00 13.33 13.68 15.00 9.09 23.26 20.00 14.63 14.63 37.14 21.21 38.71 42.86 36.36 24.00 22.73 12.24 30.00 19.44 17.91 14.04 12.63 24.44 23.53 10.98 17.65 23.68 21.15 25.49 20.69 18.18 12.90 18.75 19.15 21.88 18.87 31.11 8.77 25.00 11.61 23.91 K intron_retention slim,CG5189 chr2R + chr2R_14329819_14331159 chr2R_14329818_14329819;chr2R_14331159_14331160 chr2R_14329009_14329818;chr2R_14331160_14331717 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention lack chr2R + chr2R_13487592_13487646 chr2R_13487591_13487592;chr2R_13487646_13487647 chr2R_13487355_13487591;chr2R_13487647_13487693 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 0.00 0.00 0.00 1.06 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4847655_4848167;chrX_4847655_4848149 chrX_4847655_4847757 chrX_4847526_4847654;chrX_4848168_4848168 4.17 4.00 2.63 5.26 5.41 5.88 0.00 6.52 10.99 9.09 8.33 4.88 NA 0.00 8.11 4.65 0.00 NA 6.25 4.05 0.00 2.13 2.74 7.14 8.51 NA 4.44 3.12 2.70 0.00 3.45 3.23 5.88 12.28 3.70 5.13 4.60 0.00 2.70 8.33 0.00 5.66 4.55 3.85 4.44 8.77 2.08 10.00 3.92 3.85 2.94 4.17 NA 0.00 13.64 3.23 6.67 1.96 K intron_retention Tango13,I_chrX_13480088_13480998,I_chrX_13483861_13483954 chrX + chrX_13478431_13478893 chrX_13478430_13478431;chrX_13478893_13478894 chrX_13478190_13478430;chrX_13478894_13479073 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 10.81 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Jupiter,I_chr3R_7417030_7419354,I_chr3R_7418347_7445425,RE_chr3R_7419487_7429863,I_chr3R_7429934_7430307,I_chr3R_7429962_7445425,I_chr3R_7430006_7445425,RI_chr3R_7442748_7445425,RI_chr3R_7442793_7445425 chr3R - chr3R_7418347_7419043 chr3R_7418346_7418347;chr3R_7419043_7419044 chr3R_7418247_7418346;chr3R_7419044_7419076 83.75 NA NA 76.92 NA NA 87.50 NA 88.24 NA NA 30.30 NA NA NA NA NA NA NA 57.14 NA 80.00 NA 90.91 NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA 90.91 NA 90.91 NA NA NA NA NA 77.78 77.78 NA NA NA NA NA NA NA NA 69.23 K alternative_acceptor CG7766,I_chrX_8993495_8994545,I_chrX_8991338_8991387 chrX - chrX_8989685_8990798 chrX_8990009_8990798 chrX_8990799_8990858;chrX_8989428_8989684 73.91 73.81 77.78 85.00 73.91 64.00 46.38 61.63 73.24 65.00 92.68 72.32 57.63 68.00 66.67 67.74 75.00 55.56 83.67 64.47 73.58 93.06 79.67 73.68 72.62 81.82 74.07 84.78 94.86 87.76 60.26 86.61 88.73 71.13 77.06 87.02 87.91 78.79 84.38 75.00 76.03 79.71 69.57 88.64 79.01 74.39 71.83 84.64 75.73 68.03 72.22 70.69 70.59 72.97 65.48 70.21 69.39 76.19 K alternative_acceptor RpL22,noncoding_21234,snoRNA:Psi18S-531,snoRNA:Psi28S-2179 chrX - chrX_657025_658334;chrX_657019_658334 chrX_657022_658334 chrX_658335_658556;chrX_656593_657018 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Dystrophin,I_chr3R_15332802_15359512 chr3R + chr3R_15332802_15380539 chr3R_15352957_15380539 chr3R_15380540_15380712 0.00 3.85 0.00 2.17 0.00 0.00 2.17 0.00 0.00 NA NA 6.12 3.57 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 17.65 6.12 3.33 NA 2.50 3.57 NA NA NA 6.67 NA NA 3.57 NA 4.17 NA NA 0.00 0.00 NA 3.12 0.00 0.00 NA 0.00 NA NA 0.00 NA 2.86 NA NA NA 0.00 NA NA NA K alternative_acceptor CG10737 chr2R + chr2R_15062814_15063752;chr2R_15062814_15063692 chr2R_15062814_15063770 chr2R_15062592_15062813;chr2R_15063771_15063852 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9003790_9007675 chrX_9003790_9004854;chrX_9005039_9005114;chrX_9005177_9005419;chrX_9005562_9005630;chrX_9005820_9005886;chrX_9006126_9006195;chrX_9006273_9007675 chrX_9004855_9005038;chrX_9005115_9005176;chrX_9005420_9005561;chrX_9005631_9005819;chrX_9005887_9006125;chrX_9006196_9006272 chrX_9003721_9003789;chrX_9007676_9007775 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.33 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 96.55 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG4452 chr3L + chr3L_9362415_9362645 chr3L_9362414_9362415;chr3L_9362645_9362646 chr3L_9362001_9362414;chr3L_9362646_9363398 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Ca-P60A,RI_chr2R_19820338_19820541,I_chr2R_19820338_19821424,CEI_chr2R_19820338_19821830,I_chr2R_19820338_19823289 chr2R - chr2R_19820338_19820817;chr2R_19820338_19820781;chr2R_19820338_19820765 chr2R_19820338_19820955 chr2R_19820238_19820337;chr2R_19820956_19820969 0.00 0.00 0.00 0.46 0.00 1.01 0.00 0.88 0.32 0.00 0.00 0.00 0.00 0.00 0.67 0.00 1.00 0.92 0.69 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.88 1.32 1.03 0.79 0.00 0.00 0.48 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.95 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17233,RI_chr3L_20232898_20232962 chr3L - chr3L_20229429_20229533 chr3L_20229428_20229429;chr3L_20229533_20229534 chr3L_20229350_20229428;chr3L_20229534_20231010 88.14 95.35 96.43 74.36 95.83 90.91 97.30 97.87 93.65 95.65 88.00 92.00 85.19 100.00 88.57 92.31 88.89 86.36 93.55 91.46 96.43 85.48 84.75 89.36 88.57 96.30 97.73 86.05 90.48 84.75 94.74 84.21 75.56 87.27 81.58 83.72 92.19 81.08 85.54 87.83 88.14 82.86 90.00 85.37 88.54 88.73 81.48 84.27 81.82 89.23 88.33 78.57 81.13 76.47 85.29 79.59 85.94 87.04 K intron_retention CG32210 chr3L - chr3L_19537873_19537946 chr3L_19537872_19537873;chr3L_19537946_19537947 chr3L_19537705_19537872;chr3L_19537947_19538138 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13165623_13176198 chrX_13165622_13165623;chrX_13176198_13176199 chrX_13165515_13165622;chrX_13176199_13176262 13.04 NA NA 13.04 NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA 12.50 0.00 0.00 NA 14.29 NA NA NA NA 36.36 NA 13.64 NA NA NA NA NA 23.08 NA NA NA NA NA NA 18.75 NA NA NA NA NA NA NA NA NA K alternative_donor tomosyn,I_chrX_12531219_12531470,I_chrX_12534873_12541731,noncoding_23357,I_chrX_12548772_12549203 chrX + chrX_12543216_12545142;chrX_12543084_12545142 chrX_12542817_12545142 chrX_12545143_12545259;chrX_12542700_12542816 12.66 20.00 8.33 24.24 25.00 33.33 0.00 42.86 6.67 NA 10.00 16.67 28.57 44.44 18.18 25.00 NA 8.33 22.22 17.65 0.00 6.90 10.71 19.05 11.76 10.00 16.67 0.00 3.45 3.85 33.33 5.88 5.88 5.56 6.67 11.54 17.95 7.14 24.14 13.21 4.17 22.58 16.67 12.12 4.00 4.35 26.32 1.64 8.33 30.77 20.00 9.09 NA 15.38 13.33 14.29 19.05 5.36 K alternative_acceptor RpL28,I_chr3L_3221982_3222744,I_chr3L_3222575_3222787 chr3L - chr3L_3221982_3222787 chr3L_3222575_3222787 chr3L_3222788_3222844;chr3L_3221882_3221981 0.00 0.00 NA 6.67 NA NA 0.00 10.00 10.00 0.00 NA 0.00 NA NA NA 10.00 NA NA NA 0.00 NA 0.00 0.00 2.56 0.00 NA 5.56 12.50 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG34394,I_chr2L_3365674_3365965,RI_chr2L_3365677_3365965,I_chr2L_3365701_3365757 chr2L - chr2L_3365674_3367244 chr2L_3365673_3365674;chr2L_3367244_3367245 chr2L_3365601_3365673;chr2L_3367245_3367719 58.92 60.00 64.00 74.07 71.43 62.50 66.67 64.86 64.62 53.33 76.47 59.52 56.25 76.19 72.00 61.29 70.37 58.33 56.25 55.56 47.83 67.11 50.00 47.62 48.28 73.08 60.00 70.59 55.56 42.86 57.69 NA 30.77 70.97 42.86 39.13 55.00 50.00 51.22 52.00 NA 55.00 70.59 36.36 NA 41.67 50.00 NA 64.86 63.16 45.71 38.89 NA 63.64 61.29 75.00 71.43 55.56 K cassette osp chr2L - chr2L_14600876_14601686 chr2L_14600876_14601131;chr2L_14601481_14601686 chr2L_14601132_14601480 chr2L_14600000_14600875;chr2L_14601687_14601798 75.00 66.67 42.86 66.67 NA 66.67 66.67 40.00 85.71 NA NA 88.89 NA NA 80.00 80.00 NA NA NA 70.00 NA 100.00 85.71 83.33 NA NA 75.00 75.00 NA 83.33 28.57 NA 57.14 62.50 50.00 75.00 83.33 75.00 83.33 75.00 NA 70.00 NA 90.00 87.50 55.56 83.33 80.00 75.00 60.00 55.56 50.00 83.33 75.00 85.71 57.14 60.00 71.43 K alternative_donor Cdc42,I_chrX_19591186_19591967,I_chrX_19591567_19591967,I_chrX_19591671_19591967 chrX + chrX_19591186_19591967;chrX_19591567_19591967 chrX_19591259_19591967 chrX_19591968_19592067;chrX_19591086_19591185 98.95 99.02 98.56 98.92 98.34 98.52 98.69 98.63 98.82 98.89 99.72 98.82 98.57 99.10 99.29 98.96 98.85 98.89 99.51 98.95 99.73 98.66 99.05 99.12 98.94 99.26 98.70 98.79 97.06 98.41 98.43 98.71 98.89 99.08 99.46 97.99 99.37 99.25 99.04 99.47 98.78 99.16 99.01 99.40 98.60 98.80 99.53 98.29 98.82 99.60 99.66 99.59 98.98 99.31 98.73 99.25 99.72 99.25 K alternative_donor CG1718 chrX - chrX_21163958_21164390;chrX_21163958_21164182 chrX_21163958_21164368 chrX_21163741_21163957;chrX_21164391_21164557 58.14 60.00 66.67 50.00 61.54 50.00 50.00 56.76 57.89 64.29 37.50 50.00 57.89 64.71 54.55 60.00 70.00 50.00 50.00 51.72 62.50 47.22 66.67 65.22 50.00 56.25 60.00 41.67 55.56 66.67 56.25 57.14 64.10 51.72 57.89 61.54 64.71 53.33 50.00 55.56 65.22 58.14 54.55 58.33 69.57 61.76 69.57 54.84 58.82 46.15 65.62 61.11 64.29 60.00 55.00 70.00 69.57 63.64 K cassette CycE,I_chr2L_15729157_15729277,I_chr2L_15737965_15746454 chr2L - chr2L_15740900_15746454 chr2L_15740900_15745391;chr2L_15745644_15746454 chr2L_15745392_15745643 chr2L_15740772_15740899;chr2L_15746455_15746554 36.03 NA NA 25.00 NA 20.00 50.00 29.63 34.62 NA NA 36.84 NA 41.67 50.00 22.22 30.00 NA 35.71 41.67 NA NA 37.50 NA NA 37.50 NA NA NA NA 62.50 NA NA 40.00 23.08 NA NA NA NA NA NA 36.84 36.36 NA NA NA NA NA 27.59 NA 22.22 NA NA NA 26.67 NA NA NA K alternative_acceptor dwg,RI_chrX_2622297_2622355,RI_chrX_2622297_2622430,RI_chrX_2622435_2622577,RI_chrX_2627170_2627263 chrX + chrX_2622297_2622577;chrX_2622297_2622355 chrX_2622297_2622430 chrX_2622197_2622296;chrX_2622578_2622677 7.50 2.86 6.06 9.09 5.26 6.45 15.79 2.27 4.08 8.33 7.14 1.69 9.52 0.00 8.57 7.50 10.00 9.52 9.09 5.71 4.55 38.10 8.70 8.82 13.33 11.11 13.95 5.88 5.26 0.00 25.00 7.14 9.09 6.98 15.38 25.93 4.44 0.00 9.68 8.93 9.09 5.45 7.14 8.11 6.98 10.34 5.71 9.43 5.45 5.56 8.33 13.33 2.86 13.16 3.23 8.57 2.94 1.82 K intron_retention Hsc70Cb chr3L + chr3L_14033695_14035258 chr3L_14033694_14033695;chr3L_14035258_14035259 chr3L_14033164_14033694;chr3L_14035259_14035459 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 1.46 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5991 chr3R + chr3R_19876703_19877421 chr3R_19876702_19876703;chr3R_19877421_19877422 chr3R_19876688_19876702;chr3R_19877422_19877477 14.29 NA NA 45.45 NA NA NA 0.00 14.29 NA NA NA NA NA 13.33 NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA 15.38 NA 20.00 NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA K alternative_donor Lam chr2L + chr2L_5542656_5543324;chr2L_5543273_5543324;chr2L_5542864_5543324 chr2L_5542661_5543324 chr2L_5543325_5543794;chr2L_5542527_5542655 96.97 94.29 100.00 95.83 100.00 96.15 96.00 93.75 96.67 96.15 96.97 98.39 92.86 96.30 93.48 94.29 95.00 100.00 94.44 97.06 100.00 99.07 98.65 98.53 97.73 97.06 97.06 98.33 96.36 95.35 97.14 97.06 94.44 96.61 97.78 97.73 100.00 100.00 95.56 96.88 97.30 97.65 93.94 96.55 98.41 98.33 100.00 97.52 96.47 100.00 96.30 100.00 95.00 96.88 94.59 98.18 96.15 94.20 K intron_retention CG4882 chr2R - chr2R_19769584_19769637 chr2R_19769583_19769584;chr2R_19769637_19769638 chr2R_19769244_19769583;chr2R_19769638_19770037 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 K alternative_donor YT521-B chr3L - chr3L_3373870_3374132 chr3L_3373870_3374018 chr3L_3372970_3373869;chr3L_3374133_3374188 97.92 98.00 98.21 98.08 94.59 100.00 100.00 98.55 96.30 92.31 93.94 97.44 100.00 97.92 93.22 94.52 93.02 97.67 100.00 94.44 97.62 100.00 98.70 98.08 95.92 100.00 98.31 95.45 100.00 100.00 92.31 97.50 97.14 96.05 97.67 98.21 94.67 98.31 96.55 98.72 95.65 97.87 97.44 100.00 97.83 97.78 98.36 100.00 98.98 98.51 100.00 90.00 97.56 100.00 98.31 98.00 98.41 96.67 K intron_retention CG9986 chr3R + chr3R_24432077_24432132 chr3R_24432076_24432077;chr3R_24432132_24432133 chr3R_24431828_24432076;chr3R_24432133_24433432 0.00 NA NA 0.00 NA NA 0.00 0.00 5.26 NA NA 0.00 0.00 NA NA 5.26 NA NA NA 10.00 NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA 5.26 NA 0.00 0.00 6.67 0.00 9.09 NA 7.41 NA 0.00 13.33 NA NA 15.00 0.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention vav chrX + chrX_19165259_19165315 chrX_19165258_19165259;chrX_19165315_19165316 chrX_19165106_19165258;chrX_19165316_19165487 0.00 0.00 8.57 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 3.45 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 2.50 5.56 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 K intron_retention CG4829,I_chrX_16717240_16717547 chrX + chrX_16716806_16717135 chrX_16716805_16716806;chrX_16717135_16717136 chrX_16716590_16716805;chrX_16717136_16717239 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.41 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 K intron_retention mus308 chr3R - chr3R_8536272_8536338 chr3R_8536271_8536272;chr3R_8536338_8536339 chr3R_8535898_8536271;chr3R_8536339_8537995 0.00 NA NA 0.00 NA 0.00 7.14 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA 6.67 0.00 NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA K multi_cassette Vha100-1,I_chr3R_24958227_24960770,RI_chr3R_24959152_24959582,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24958227_24960770 chr3R_24958227_24959059;chr3R_24959152_24959582;chr3R_24959684_24960770 chr3R_24959060_24959151;chr3R_24959583_24959683 chr3R_24958127_24958226;chr3R_24960771_24960870 8.93 NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA 5.88 NA NA NA NA NA NA NA NA 9.52 NA NA NA NA NA 8.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG40191,I_chr2RHet_391475_391828,I_chr2RHet_392279_392824 chr2RHet + chr2RHet_390972_391180;chr2RHet_391127_391180 chr2RHet_391004_391180 chr2RHet_391181_391278;chr2RHet_390957_390971 0.00 0.00 9.09 0.00 0.00 0.00 3.85 0.00 3.85 NA 0.00 3.85 7.14 0.00 7.69 4.55 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 K alternative_acceptor CG4630,RI_chr2R_9103472_9103634,I_chr2R_9103765_9103852,I_chr2R_9103956_9104108,RI_chr2R_9104206_9104265,I_chr2R_9105809_9106399 chr2R - chr2R_9105705_9106592 chr2R_9105809_9106592 chr2R_9106593_9106722;chr2R_9105094_9105704 5.88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.33 0.00 NA NA 5.88 NA NA NA 5.56 NA NA NA 0.00 18.75 NA NA 4.55 11.11 NA 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Elf,I_chr2L_12437061_12437812 chr2L + chr2L_12435424_12437812 chr2L_12435423_12435424;chr2L_12437812_12437813 chr2L_12434559_12435423;chr2L_12437813_12437912 0.58 0.00 0.00 0.00 2.30 1.14 1.06 0.84 0.79 1.03 0.00 1.09 0.00 0.00 0.88 0.97 1.47 1.04 0.63 0.80 0.58 1.62 0.62 0.97 1.03 1.05 0.98 1.28 1.47 0.45 1.03 0.00 1.10 0.00 0.00 0.38 0.00 1.01 0.33 0.35 0.68 0.55 0.00 0.97 0.57 0.00 0.00 0.00 0.58 0.00 0.00 2.50 0.56 0.00 0.42 0.00 0.00 1.16 K intron_retention scaf6,EI_chr3L_17037760_17037808 chr3L - chr3L_17033702_17034793 chr3L_17033701_17033702;chr3L_17034793_17034794 chr3L_17033539_17033701;chr3L_17034794_17035140 23.08 26.47 20.00 15.38 40.00 38.46 36.84 25.53 30.67 22.73 17.14 42.11 34.29 25.81 25.00 23.08 25.71 30.00 32.26 32.86 34.38 14.29 20.69 17.02 23.53 27.27 28.21 26.92 6.90 20.59 13.33 10.00 16.67 31.15 20.00 17.39 24.56 19.05 17.39 19.61 31.25 25.81 22.22 20.59 26.09 14.29 14.29 16.67 36.36 22.22 19.64 21.43 21.88 15.79 23.53 20.59 31.25 23.08 K intron_retention Pk61C,CE_chr3L_129889_141769,I_chr3L_132531_133824,I_chr3L_133962_134014,I_chr3L_136336_137121,I_chr3L_136336_141563 chr3L + chr3L_129889_135457 chr3L_129888_129889;chr3L_135457_135458 chr3L_129840_129888;chr3L_135458_135842 0.00 0.00 0.00 0.00 4.76 2.44 1.67 3.61 1.75 0.00 0.00 3.03 0.00 0.00 1.67 0.00 0.00 0.00 4.08 2.22 0.00 0.00 2.50 3.57 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 5.48 0.00 0.00 3.70 0.00 3.70 0.00 0.00 2.04 2.50 0.00 0.00 0.00 7.14 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 K intron_retention CG7741,I_chr2R_7192031_7192092 chr2R + chr2R_7192585_7192642 chr2R_7192584_7192585;chr2R_7192642_7192643 chr2R_7192256_7192584;chr2R_7192643_7192800 0.00 0.00 0.00 0.00 NA 14.29 8.00 0.00 4.17 NA NA 0.00 0.00 NA 0.00 3.23 0.00 NA 3.85 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA NA 4.88 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,RI_chr3R_27801288_27801517,I_chr3R_27801288_27801596 chr3R - chr3R_27795508_27805244 chr3R_27795508_27801169;chr3R_27801288_27801517;chr3R_27801688_27805244 chr3R_27801170_27801287;chr3R_27801518_27801687 chr3R_27795478_27795507;chr3R_27805245_27805341 46.15 60.00 42.86 69.23 22.22 NA NA 46.67 41.67 NA 100.00 66.67 33.33 66.67 42.86 55.56 NA 66.67 50.00 55.56 NA NA NA 22.22 NA 42.86 40.00 NA 25.00 NA 42.86 NA NA 60.00 NA NA NA NA NA 37.50 NA 46.15 40.00 NA NA 50.00 NA 50.00 42.86 NA 37.50 33.33 NA NA 50.00 NA NA 66.67 K jcn_only_AA CG14414,I_chrX_14474880_14474927 chrX + chrX_14474880_14474997 chrX_14474880_14474951 chrX_14474780_14474879;chrX_14474998_14475027 80.56 82.22 90.48 86.27 93.33 83.87 86.11 79.63 82.81 81.82 81.58 77.46 88.00 84.62 85.71 90.62 93.75 89.29 96.67 83.13 85.00 75.44 69.70 70.45 73.68 100.00 81.16 63.16 79.45 80.56 54.35 75.00 81.88 86.96 80.43 81.97 64.29 61.36 76.25 79.05 83.82 78.87 89.66 71.43 74.17 74.19 78.38 70.63 78.21 81.63 80.00 77.50 71.64 77.61 91.67 70.67 86.59 64.49 K intron_retention CG7203,Rack1,RI_chr2L_7826337_7826533 chr2L - chr2L_7826337_7826769 chr2L_7826336_7826337;chr2L_7826769_7826770 chr2L_7826237_7826336;chr2L_7826770_7826981 0.88 0.44 0.61 0.66 0.46 0.83 0.70 0.86 0.51 0.97 0.31 0.53 0.68 0.96 0.62 1.80 1.00 0.95 0.93 0.47 0.66 1.25 0.89 1.12 0.92 1.08 0.84 1.50 1.27 1.01 2.87 0.87 0.88 0.58 0.92 0.71 0.75 0.76 0.56 0.94 0.97 0.64 0.53 1.06 0.68 1.15 0.71 2.09 1.41 1.03 1.24 1.37 0.73 0.74 0.77 1.01 1.56 1.61 N intron_retention CG31619,I_chr2L_21725446_21728027 chr2L + chr2L_21719644_21727005 chr2L_21719643_21719644;chr2L_21727005_21727006 chr2L_21719514_21719643;chr2L_21727006_21727362 30.77 NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA 20.00 30.77 NA NA NA 35.71 NA NA 15.38 NA NA 30.00 NA NA NA 26.67 NA NA 30.77 NA 40.00 NA NA 25.00 NA NA NA NA NA 36.36 NA NA NA NA NA NA 22.22 K alternative_acceptor CG42307 chr3L + chr3L_7324332_7324396 chr3L_7324332_7324391 chr3L_7323399_7324331;chr3L_7324397_7324436 83.33 NA NA NA NA NA NA 69.23 83.33 NA NA NA NA NA NA 90.00 NA NA NA 77.78 NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA K intron_retention CG12129,RI_chr2R_5921057_5921261 chr2R + chr2R_5921527_5921577 chr2R_5921526_5921527;chr2R_5921577_5921578 chr2R_5921262_5921526;chr2R_5921578_5922287 0.00 0.00 0.00 2.70 0.00 0.00 0.00 2.00 0.00 NA 11.76 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 2.50 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K jcn_only_AD exba,RI_chr3R_1425087_1425302,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1425087_1426209;chr3R_1425087_1426125;chr3R_1425087_1426009 chr3R_1425087_1425759 chr3R_1424987_1425086;chr3R_1426210_1426225 86.27 86.21 88.46 86.21 92.59 89.36 85.71 88.17 83.87 83.78 95.45 93.33 82.50 87.76 82.81 91.76 94.00 83.87 87.50 90.83 98.57 94.64 89.13 83.33 88.24 94.29 83.67 90.57 100.00 84.21 85.33 88.37 93.83 90.38 90.70 96.55 80.33 86.00 89.19 85.98 86.21 85.44 78.00 85.14 83.33 83.52 89.36 90.91 83.74 79.41 80.65 85.00 86.49 83.33 86.27 90.91 77.78 81.08 K intron_retention Cyp12a5,Cyp12a4 chr3R + chr3R_14958479_14958611 chr3R_14958478_14958479;chr3R_14958611_14958612 chr3R_14958180_14958478;chr3R_14958612_14959102 8.24 6.45 6.98 13.33 8.33 9.09 11.43 11.63 13.16 NA 14.29 6.67 17.50 11.36 5.00 6.78 11.90 0.00 12.77 7.25 0.00 NA 0.00 6.25 NA 9.09 17.65 NA NA NA 8.51 NA NA 19.23 7.14 NA NA NA 13.33 11.11 NA 8.24 16.13 0.00 NA 6.25 0.00 NA 15.62 0.00 5.56 6.67 0.00 0.00 9.43 7.69 0.00 12.50 K intron_retention Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21119953_21120059 chr2L_21119952_21119953;chr2L_21120059_21120060 chr2L_21119753_21119952;chr2L_21120060_21120180 0.00 0.00 0.00 5.33 0.00 0.00 0.00 2.70 0.86 0.00 0.00 1.10 0.00 0.00 4.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 3.03 0.00 0.00 1.61 0.00 0.00 0.00 2.70 0.00 3.33 0.00 0.00 1.98 0.00 0.00 0.00 2.56 0.00 6.85 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7830 chr2L - chr2L_8307069_8307146 chr2L_8307068_8307069;chr2L_8307146_8307147 chr2L_8306906_8307068;chr2L_8307147_8307873 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.29 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9510 chr2L - chr2L_8942453_8942508 chr2L_8942452_8942453;chr2L_8942508_8942509 chr2L_8941989_8942452;chr2L_8942509_8942655 0.00 0.00 0.00 4.35 4.00 0.00 0.00 7.27 2.00 0.00 0.00 0.00 0.00 16.67 0.00 0.00 5.26 0.00 0.00 4.44 0.00 NA 5.56 0.00 0.00 0.00 11.76 0.00 NA 0.00 4.44 4.76 0.00 7.14 0.00 NA 0.00 6.25 3.23 0.00 NA 7.14 0.00 0.00 NA 0.00 10.00 NA 6.98 0.00 0.00 0.00 0.00 0.00 6.25 11.11 0.00 6.45 K jcn_only_AD RI_chr3L_17480321_17481164,Oatp74D,chr3L_17480319_17480976.0,I_chr3L_17480594_17481164,I_chr3L_17500359_17500724 chr3L + chr3L_17480321_17481164;chr3L_17480290_17481164;chr3L_17480594_17481164 chr3L_17480301_17481164 chr3L_17481165_17481264;chr3L_17480274_17480289 30.77 NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention mRpS7,I_chr2L_10388957_10390048 chr2L + chr2L_10386788_10386861 chr2L_10386787_10386788;chr2L_10386861_10386862 chr2L_10386675_10386787;chr2L_10386862_10387680 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Mec2,I_chrX_19082929_19083066,I_chrX_19083581_19083676 chrX + chrX_19083581_19083672 chrX_19083580_19083581;chrX_19083672_19083673 chrX_19083481_19083580;chrX_19083673_19083838 0.14 0.20 0.81 1.21 0.00 0.00 0.41 0.47 0.53 0.00 0.00 0.14 0.31 0.00 0.47 0.00 0.33 0.00 0.70 0.42 0.00 0.00 1.18 0.44 0.00 0.32 1.56 0.56 0.00 0.00 0.35 0.00 0.00 0.65 0.00 0.78 0.14 0.00 0.00 0.43 0.00 0.38 0.00 0.00 0.17 0.00 0.52 0.00 0.33 0.36 0.58 0.00 0.00 0.00 0.46 0.00 0.39 0.00 K alternative_last_exon Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21129083_21132033 chr2L_21129083_21131230 chr2L_21132034_21135233 chr2L_21131231_21131463 chr2L_21128779_21129082 19.57 17.50 18.18 14.29 14.81 15.15 27.87 19.05 23.85 23.08 20.00 17.65 46.67 19.57 21.05 19.67 21.21 19.35 21.74 21.79 13.79 19.64 18.03 21.28 17.14 21.21 23.40 55.10 22.50 22.45 32.61 24.24 16.92 16.46 11.76 11.11 20.37 27.50 14.29 28.12 14.29 28.09 27.59 27.78 15.79 19.30 14.29 23.21 21.43 18.75 18.52 18.75 6.67 3.70 26.67 14.29 7.50 15.69 K intron_retention CG3348,RI_chr3R_23117734_23117847 chr3R - chr3R_23117734_23117847 chr3R_23117733_23117734;chr3R_23117847_23117848 chr3R_23117634_23117733;chr3R_23117848_23117947 66.66 NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG17119,sav chr3R - chr3R_18880554_18880609 chr3R_18880553_18880554;chr3R_18880609_18880610 chr3R_18880451_18880553;chr3R_18880610_18880898 1.97 0.00 1.71 1.93 0.00 0.00 3.55 4.11 1.47 0.00 1.56 0.51 2.50 0.88 0.00 2.96 1.12 1.71 2.13 2.43 0.00 3.95 2.35 1.97 4.11 2.73 3.62 10.87 6.06 3.26 1.37 2.90 4.72 1.55 0.00 2.67 2.61 1.08 3.01 3.18 4.44 1.33 1.89 2.54 0.00 3.75 2.90 4.76 2.69 2.90 1.69 0.99 1.68 0.00 0.76 0.00 1.79 2.00 K alternative_donor PPP4R2r chrX + chrX_10373003_10373505 chrX_10373054_10373505 chrX_10373506_10373750;chrX_10372866_10373002 5.41 NA 4.76 8.82 NA NA 12.00 3.57 7.69 NA NA 9.38 6.25 0.00 12.50 7.55 16.67 NA 4.55 6.06 5.26 0.00 5.00 NA NA 0.00 NA NA NA NA 8.33 NA 0.00 5.56 0.00 NA 6.67 NA NA NA NA 3.23 14.29 NA NA 0.00 NA NA 6.12 NA 5.00 NA NA NA 4.00 NA NA NA K intron_retention Nhe3,I_chr2L_6680525_6680670 chr2L - chr2L_6678225_6679985 chr2L_6678224_6678225;chr2L_6679985_6679986 chr2L_6677894_6678224;chr2L_6679986_6680114 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 95.45 NA 93.33 100.00 100.00 100.00 NA 100.00 100.00 94.44 100.00 100.00 100.00 93.75 88.89 92.86 93.75 100.00 100.00 92.31 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 90.00 95.65 NA 100.00 100.00 100.00 K intron_retention I_chr2L_16825519_16825593,I_chr2L_16827140_16827192,CG31739 chr2L + chr2L_16827247_16827493 chr2L_16827246_16827247;chr2L_16827493_16827494 chr2L_16827193_16827246;chr2L_16827494_16827644 7.81 5.13 12.77 10.14 12.00 8.57 11.36 8.64 13.10 9.38 6.06 6.74 8.57 7.89 5.41 7.25 10.34 13.79 9.30 6.19 11.43 7.81 2.78 3.70 8.89 8.57 3.77 7.32 7.14 6.98 8.51 4.35 11.63 10.26 6.67 7.50 5.19 1.75 3.17 5.68 12.50 9.30 12.50 9.52 4.76 7.14 0.00 13.51 5.88 0.00 5.97 8.11 0.00 9.52 7.55 6.45 14.29 21.05 K alternative_donor NijA chr3L - chr3L_10688805_10689678 chr3L_10688805_10689666 chr3L_10688729_10688804;chr3L_10689679_10689954 35.71 30.77 NA 36.00 NA NA NA 29.17 42.86 NA NA 12.50 NA NA NA 41.67 NA NA NA 29.41 NA 44.00 47.83 47.62 NA NA 38.46 46.15 NA 25.00 NA 40.00 50.00 33.33 38.89 NA 26.32 31.25 40.00 18.18 25.00 34.62 NA 38.10 32.00 50.00 41.18 29.17 28.57 30.00 36.84 37.50 35.71 35.71 NA 38.10 33.33 31.25 K alternative_acceptor CG14235,noncoding_24847,CG18809 chrX - chrX_19636926_19637476 chrX_19636939_19637476 chrX_19637477_19637545;chrX_19636920_19636925 16.67 25.00 NA 26.09 NA NA 20.00 23.81 11.11 NA NA 24.14 NA NA NA 25.00 NA NA NA 18.60 NA 21.43 20.00 16.67 27.27 NA 28.57 35.71 12.20 13.33 NA NA 13.33 19.05 15.79 NA 15.38 20.00 14.29 NA NA 12.50 NA 10.53 7.41 20.00 15.15 5.56 25.00 6.67 15.38 16.67 9.68 16.67 NA 8.33 15.38 21.74 K jcn_only_AD CG3558,RI_chr2L_2995071_2997790 chr2L + chr2L_2993464_2993544;chr2L_2993444_2993544;chr2L_2993378_2993544 chr2L_2993410_2993544 chr2L_2993545_2994408;chr2L_2993028_2993377 1.44 1.72 5.63 0.93 6.38 1.89 0.72 0.69 1.27 0.00 1.89 0.00 1.47 1.41 3.23 0.80 0.00 1.85 3.45 0.76 4.17 0.00 3.08 0.00 3.03 0.00 4.35 0.00 8.85 1.08 0.00 0.00 0.00 2.00 2.63 1.82 2.33 0.00 0.00 0.00 1.19 1.57 5.66 5.75 0.00 1.87 4.55 0.56 0.74 0.00 8.62 2.27 5.88 NA 5.00 0.00 5.56 0.00 K jcn_only_AA CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907848_9908424;chr2L_9908142_9908424 chr2L_9907784_9908424 chr2L_9908425_9908505;chr2L_9907756_9907783 86.44 83.61 92.31 86.92 81.82 87.50 81.67 88.24 84.17 NA 80.00 85.39 86.11 89.29 88.64 96.25 83.33 92.45 91.67 87.72 75.61 86.21 94.79 92.06 83.02 85.45 85.37 84.38 91.11 88.71 82.22 89.66 84.51 88.07 88.46 93.83 83.58 82.76 84.13 91.76 86.67 89.57 96.77 88.89 72.41 94.00 84.09 82.14 89.13 82.98 86.05 78.85 86.05 92.59 89.33 86.05 80.56 95.35 K intron_retention Updo chr2R + chr2R_5473177_5473235 chr2R_5473176_5473177;chr2R_5473235_5473236 chr2R_5472433_5473176;chr2R_5473236_5473623 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.83 0.00 0.00 1.27 0.84 1.92 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chrX_8468338_8469380,I_chrX_8468338_8477573,CG12065,I_chrX_8469524_8477579,CE_chrX_8469528_8477573 chrX + chrX_8468441_8469380 chrX_8468440_8468441;chrX_8469380_8469381 chrX_8468351_8468440;chrX_8469381_8469480 8.06 5.88 17.39 2.82 5.13 9.52 10.00 5.88 6.99 6.82 0.00 11.96 6.90 8.16 11.48 8.42 5.17 4.88 7.14 7.53 8.16 6.72 7.07 11.69 19.51 17.24 17.07 15.38 15.52 4.84 6.85 10.26 9.76 8.05 6.82 12.50 9.09 7.41 8.51 21.52 13.33 5.83 6.25 6.74 8.33 10.53 2.60 14.29 6.06 6.56 5.56 8.57 12.50 5.56 8.06 9.38 4.60 10.71 K jcn_only_AA I_chr2R_13433672_13433749,MESR4 chr2R + chr2R_13436468_13436586 chr2R_13436468_13436573 chr2R_13436391_13436467;chr2R_13436587_13438569 96.61 100.00 94.44 94.64 NA 97.56 85.45 96.67 98.96 97.44 96.43 96.47 90.62 95.45 95.45 95.95 97.56 96.61 97.67 98.39 97.06 96.67 100.00 90.62 97.56 96.61 92.50 86.49 95.00 90.91 92.11 NA 92.31 98.75 94.00 100.00 98.25 89.29 97.50 100.00 NA 98.67 93.48 89.74 90.48 96.30 NA 96.97 97.26 NA 98.00 96.97 100.00 NA 100.00 NA NA 95.24 K intron_retention Kap3 chrX - chrX_11232823_11233246 chrX_11232822_11232823;chrX_11233246_11233247 chrX_11232705_11232822;chrX_11233247_11233298 17.52 NA NA 25.00 22.22 16.67 26.32 26.67 20.69 NA NA 19.05 NA NA NA 12.50 NA NA 21.05 16.67 NA NA NA NA NA 0.00 26.67 NA NA NA 17.65 NA NA 12.50 NA NA 11.76 NA NA 21.43 NA 17.39 NA NA NA NA NA NA 12.50 NA 13.33 NA NA NA 16.67 NA NA NA K intron_retention KrT95D,I_chr3R_19825840_19825904 chr3R - chr3R_19856754_19857433 chr3R_19856753_19856754;chr3R_19857433_19857434 chr3R_19856699_19856753;chr3R_19857434_19857527 95.00 93.75 100.00 95.00 91.67 84.21 100.00 100.00 100.00 100.00 90.00 87.10 100.00 93.33 93.75 95.83 76.92 85.71 95.24 88.46 92.31 96.88 91.43 95.83 94.44 92.31 95.45 94.74 95.00 90.48 95.00 100.00 100.00 92.31 88.89 94.74 94.44 93.75 93.75 96.30 100.00 96.88 100.00 95.65 NA 95.24 100.00 100.00 96.15 87.50 91.89 93.33 63.64 NA 100.00 92.86 100.00 100.00 K jcn_only_AA RpS11,snoRNA:Me28S-C3420a,I_chr2R_8087545_8087698,I_chr2R_8087747_8088193 chr2R - chr2R_8087093_8087338 chr2R_8087095_8087338 chr2R_8087339_8087544;chr2R_8086818_8087092 99.97 99.98 99.96 99.96 100.00 99.97 99.95 99.97 99.98 100.00 99.95 99.97 99.97 99.98 99.98 99.95 99.98 99.97 99.98 99.97 99.98 100.00 99.96 99.97 99.92 99.98 99.96 100.00 99.99 99.97 99.97 99.97 99.98 99.98 99.96 99.94 99.99 99.96 99.95 99.97 99.96 99.99 99.96 99.96 99.98 99.95 99.98 100.00 99.97 99.97 99.95 100.00 99.97 99.99 99.99 99.98 99.95 99.97 K jcn_only_AD CG3621,noncoding_21543,I_chrX_2066779_2066838 chrX + chrX_2066737_2066838;chrX_2066779_2066838 chrX_2066739_2066838 chrX_2066839_2066938;chrX_2066679_2066736 99.49 98.80 99.31 100.00 97.80 99.28 100.00 99.51 99.48 99.13 100.00 99.26 100.00 100.00 99.40 100.00 100.00 100.00 100.00 98.80 100.00 100.00 100.00 99.58 100.00 98.51 100.00 100.00 99.42 100.00 99.32 100.00 99.28 99.42 98.32 99.42 99.29 99.31 99.64 99.20 98.65 99.67 99.02 99.40 99.64 99.24 100.00 100.00 99.08 100.00 99.43 99.08 99.49 100.00 99.35 99.61 99.71 98.56 K intron_retention CG18317,RI_chr2L_1718492_1723881,I_chr2L_1718904_1718995,RI_chr2L_1718904_1724234 chr2L - chr2L_1718492_1718695 chr2L_1718491_1718492;chr2L_1718695_1718696 chr2L_1718421_1718491;chr2L_1718696_1718903 36.54 23.53 37.50 29.17 35.71 47.06 42.31 22.58 26.19 54.76 41.67 28.57 25.00 NA 27.78 32.43 33.33 71.43 40.91 29.11 27.78 31.82 40.00 42.31 61.11 33.33 52.27 48.94 36.54 50.00 36.84 31.82 36.84 25.00 29.41 39.39 53.49 45.45 41.30 5.37 35.29 40.48 NA 35.42 36.11 37.84 29.03 38.10 31.91 24.24 35.14 38.46 26.09 39.13 27.27 50.00 44.00 36.67 K alternative_acceptor CG5830,I_chr3L_15992339_15996998,I_chr3L_15996923_15996998 chr3L - chr3L_15988946_15996998 chr3L_15996923_15996998 chr3L_15996999_15997098;chr3L_15988710_15988945 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14782,noncoding_21360 chrX + chrX_1374254_1375040 chrX_1374253_1374254;chrX_1375040_1375041 chrX_1372550_1374253;chrX_1375041_1375343 27.40 24.84 22.83 38.66 24.34 28.08 33.16 28.09 23.54 28.73 31.40 33.01 20.49 25.75 23.61 28.42 20.83 28.72 25.14 28.61 26.04 45.85 25.66 24.02 27.84 32.31 26.05 25.98 33.80 24.76 32.21 30.25 30.90 25.23 31.62 38.44 23.12 22.59 27.07 27.49 29.97 26.32 27.40 25.92 35.02 25.87 26.40 33.52 25.21 22.29 25.20 25.80 29.79 31.42 29.30 26.03 28.64 32.10 K intron_retention I_chr3R_261173_261244,CG14650,RI_chr3R_265878_265942 chr3R + chr3R_263740_263802 chr3R_263739_263740;chr3R_263802_263803 chr3R_263114_263739;chr3R_263803_265481 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 100.00 100.00 100.00 98.39 99.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.42 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Wwox,I_chr2L_8000434_8000497,Spn28D chr2L - chr2L_8003464_8003524 chr2L_8003463_8003464;chr2L_8003524_8003525 chr2L_8003284_8003463;chr2L_8003525_8004034 0.00 3.12 0.00 0.00 0.00 6.45 2.86 6.12 8.33 NA 0.00 10.42 NA 0.00 5.26 10.00 4.76 NA 7.41 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 6.67 0.00 0.00 0.00 0.00 5.77 4.35 4.35 0.00 0.00 0.00 0.00 7.14 0.00 3.45 0.00 0.00 0.00 3.33 6.06 0.00 0.00 K intron_retention PHGPx chr3L + chr3L_3326713_3327859 chr3L_3326712_3326713;chr3L_3327859_3327860 chr3L_3326587_3326712;chr3L_3327860_3328183 0.84 0.37 0.78 1.27 0.85 1.15 1.04 0.29 1.62 0.71 1.44 1.16 0.00 1.15 0.75 0.84 0.00 0.00 0.84 0.84 0.76 2.14 1.09 1.06 1.60 0.30 1.78 2.12 2.01 0.84 1.41 1.47 1.88 0.62 0.00 0.55 1.32 0.28 0.68 0.94 0.66 0.00 0.57 0.96 1.01 1.05 0.99 2.68 1.55 0.67 1.69 0.35 0.41 0.00 1.03 0.27 0.55 0.61 K jcn_only_AA Utx chr2L - chr2L_10274091_10274164 chr2L_10274106_10274164 chr2L_10274165_10274868;chr2L_10273966_10274090 57.79 56.41 54.55 58.00 78.26 67.86 57.89 60.61 59.72 NA 63.33 65.22 57.14 50.00 51.43 54.72 51.61 64.71 62.22 48.33 60.71 NA 41.67 62.50 53.85 41.18 67.57 NA NA NA 59.46 NA NA 57.69 61.90 NA 57.14 NA 54.55 73.33 60.00 54.93 52.63 63.33 NA 50.00 68.42 45.45 59.62 41.82 66.67 45.83 NA NA 51.22 64.29 48.48 NA K alternative_acceptor cni,RI_chr2L_16309575_16309999,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16309575_16309999 chr2L_16309931_16309999 chr2L_16310000_16310099;chr2L_16309475_16309574 100.00 100.00 100.00 99.21 100.00 100.00 99.24 100.00 100.00 100.00 98.31 99.31 100.00 100.00 100.00 99.29 100.00 100.00 100.00 99.46 100.00 100.00 98.18 99.02 98.25 92.21 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 98.31 97.87 100.00 100.00 98.96 100.00 97.96 99.39 100.00 100.00 100.00 100.00 98.91 100.00 99.38 98.97 100.00 98.67 100.00 100.00 98.90 98.99 100.00 100.00 K intron_retention CG7861 chr2R + chr2R_1931071_1931119 chr2R_1931070_1931071;chr2R_1931119_1931120 chr2R_1930598_1931070;chr2R_1931120_1931543 0.00 1.54 1.28 3.25 0.00 0.00 0.00 0.83 0.75 0.00 0.00 0.84 0.00 0.00 0.00 3.60 0.00 2.38 0.00 1.18 0.00 0.00 2.78 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 3.48 0.00 0.00 1.54 0.00 0.00 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 K intron_retention CG5033 chr2R + chr2R_13677354_13677423 chr2R_13677353_13677354;chr2R_13677423_13677424 chr2R_13677188_13677353;chr2R_13677424_13678738 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Aldolase,I_chr3R_22083764_22086684 chr3R - chr3R_22082855_22082946 chr3R_22082854_22082855;chr3R_22082946_22082947 chr3R_22082655_22082854;chr3R_22082947_22083763 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.22 0.49 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ex chr2L + chr2L_443162_443225 chr2L_443161_443162;chr2L_443225_443226 chr2L_443082_443161;chr2L_443226_446583 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG6084 chr3L - chr3L_11613766_11614313 chr3L_11613766_11614022;chr3L_11614204_11614313 chr3L_11614023_11614203 chr3L_11613759_11613765;chr3L_11614314_11614522 56.94 65.85 60.00 11.56 70.83 62.16 62.61 71.50 76.68 61.40 79.63 40.62 79.49 68.13 64.44 67.96 56.76 74.19 69.31 66.67 75.93 71.43 55.43 53.00 45.90 43.24 56.00 11.90 34.85 46.81 75.45 47.73 42.50 68.79 48.28 22.54 52.94 44.26 37.35 34.35 37.62 68.18 67.11 64.00 38.14 60.48 56.94 54.55 71.07 40.28 56.60 59.68 49.00 52.22 64.13 62.75 51.60 48.19 K alternative_donor Taf12,RI_chr3R_7504595_7505288,I_chr3R_7504949_7505288 chr3R - chr3R_7504595_7505288 chr3R_7504595_7504665 chr3R_7504495_7504594;chr3R_7505289_7505388 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG1707,I_chr2R_3281467_3281526 chr2R - chr2R_3283232_3283299 chr2R_3283231_3283232;chr2R_3283299_3283300 chr2R_3283154_3283231;chr2R_3283300_3283367 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 1.37 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.14 K intron_retention CG7998 chr3R + chr3R_14052660_14053426 chr3R_14052659_14052660;chr3R_14053426_14053427 chr3R_14052452_14052659;chr3R_14053427_14053623 0.00 0.72 0.83 0.00 0.00 0.00 0.00 0.56 0.33 0.00 0.00 0.77 0.00 0.00 0.00 0.00 1.11 1.80 0.00 0.00 0.00 0.00 0.74 0.69 0.00 0.00 0.00 0.60 1.25 0.43 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.68 0.29 1.01 0.81 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7530,I_chr3R_10556352_10557136,eff chr3R - chr3R_10556352_10557136 chr3R_10556351_10556352;chr3R_10557136_10557137 chr3R_10556252_10556351;chr3R_10557137_10557139 100.00 92.31 94.12 100.00 100.00 100.00 95.00 96.55 97.22 100.00 92.31 100.00 94.44 100.00 100.00 100.00 94.44 100.00 94.44 98.00 93.33 NA 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 95.24 100.00 100.00 96.00 93.75 100.00 100.00 98.11 95.00 100.00 100.00 100.00 96.30 96.97 91.67 97.83 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Irc,I_chr3R_12830023_12830084,CG8907 chr3R + chr3R_12832416_12832471 chr3R_12832415_12832416;chr3R_12832471_12832472 chr3R_12832298_12832415;chr3R_12832472_12832634 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.13 0.14 0.00 0.00 0.16 0.00 0.24 0.00 0.00 0.00 0.00 0.39 0.22 0.00 0.00 0.67 0.00 0.00 0.50 0.00 0.00 1.18 0.00 0.00 0.41 0.00 0.42 0.00 1.73 0.00 0.00 0.73 0.19 0.92 0.49 0.00 0.00 0.00 0.00 0.59 0.14 0.54 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.15 K alternative_acceptor CG15160 chr2L + chr2L_18593171_18593289 chr2L_18593171_18593277 chr2L_18592400_18593170;chr2L_18593290_18593413 77.78 NA 77.78 75.00 NA 55.56 60.00 100.00 75.00 NA NA 75.00 NA NA NA 72.73 NA NA 85.71 69.23 NA NA 78.57 80.00 NA 88.89 80.00 NA NA NA NA NA NA 90.91 NA NA NA NA NA 63.64 NA 88.89 NA NA 66.67 77.78 100.00 NA 87.50 75.00 NA 87.50 NA NA 77.78 75.00 75.00 NA K jcn_only_AA Cip4,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4324448_4324921 chr3L_4324451_4324921 chr3L_4324922_4324996;chr3L_4324284_4324447 23.77 26.19 22.60 21.61 31.08 19.05 27.12 17.37 24.56 21.43 26.42 22.18 14.89 16.67 26.98 17.18 17.86 16.98 24.47 21.29 18.75 17.50 30.11 30.84 34.25 21.19 35.35 33.33 15.38 27.91 23.85 22.58 19.83 21.64 16.18 16.26 21.88 16.67 25.29 27.17 17.50 25.78 26.44 32.41 8.75 26.74 24.68 25.56 23.77 30.16 27.27 22.67 19.75 25.00 26.43 11.63 25.74 24.00 K jcn_only_AD CG31460,I_chr3R_4388607_4388664 chr3R + chr3R_4388607_4388664 chr3R_4388609_4388664 chr3R_4388665_4388756;chr3R_4388554_4388606 100.00 92.86 100.00 100.00 98.00 92.50 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 98.00 100.00 94.59 100.00 100.00 100.00 NA NA NA NA 97.06 NA 100.00 100.00 NA 100.00 96.77 100.00 98.25 NA NA NA NA NA 98.17 98.15 98.82 100.00 96.00 100.00 98.21 NA 98.70 100.00 NA NA NA 100.00 NA 98.00 NA NA 97.75 K intron_retention CG13085,REI_chr2L_19426699_19427208,I_chr2L_19426780_19427208,CG16771,I_chr2L_19426895_19427208,I_chr2L_19427121_19427208 chr2L + chr2L_19426699_19427208 chr2L_19426698_19426699;chr2L_19427208_19427209 chr2L_19426680_19426698;chr2L_19427209_19427308 9.26 11.48 7.27 22.09 10.87 9.52 9.88 11.22 11.32 23.53 5.26 11.82 12.20 12.00 4.11 7.41 14.29 13.46 10.29 9.79 5.80 7.69 8.22 15.09 10.53 2.90 9.33 11.11 5.71 5.13 9.26 15.15 2.25 12.35 6.06 9.09 7.89 8.33 6.82 4.71 1.96 7.34 15.00 5.56 8.89 7.58 9.30 0.00 10.48 5.88 8.06 12.20 12.50 7.14 10.17 8.16 12.77 7.84 N multi_cassette CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525393_1529105 chr3L_1525393_1527189;chr3L_1527382_1527438;chr3L_1527614_1527673;chr3L_1528077_1529105 chr3L_1527190_1527381;chr3L_1527439_1527613;chr3L_1527674_1528076 chr3L_1525293_1525392;chr3L_1529106_1529206 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 45.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Tfb1 chr2R + chr2R_10252677_10252731 chr2R_10252676_10252677;chr2R_10252731_10252732 chr2R_10252501_10252676;chr2R_10252732_10252979 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.79 0.00 0.00 0.00 0.00 1.08 0.30 0.00 K alternative_donor TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748984_19749899;chr2R_19748984_19750012 chr2R_19748984_19749783 chr2R_19748884_19748983;chr2R_19750013_19750013 84.21 83.33 83.33 85.71 82.61 82.86 88.71 82.43 88.76 80.00 86.21 83.54 79.41 84.85 75.00 82.35 80.56 88.89 86.36 88.37 84.21 83.33 73.17 90.91 83.33 82.50 85.29 86.36 90.00 93.33 67.35 80.00 85.71 86.15 81.48 87.50 65.52 83.33 75.76 89.66 87.80 86.67 84.38 90.00 77.78 80.00 65.22 95.56 88.16 79.31 82.86 82.61 84.00 91.30 88.24 90.91 85.71 88.46 K alternative_acceptor Xpd chr2R + chr2R_17058572_17058625 chr2R_17058572_17058618 chr2R_17058531_17058571;chr2R_17058626_17059083 2.44 NA 3.23 4.35 0.00 0.00 0.00 2.44 1.82 NA 2.94 5.88 6.67 0.00 0.00 0.00 0.00 0.00 0.00 1.54 4.35 3.57 NA NA 16.67 0.00 NA NA 12.50 6.67 8.82 NA 5.56 2.44 NA 15.00 NA NA 4.76 0.00 NA 5.17 0.00 NA 3.12 6.67 NA 0.00 1.92 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention RanBPM chr2R + chr2R_6322096_6322150 chr2R_6322095_6322096;chr2R_6322150_6322151 chr2R_6321932_6322095;chr2R_6322151_6322290 0.00 3.57 0.00 1.54 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 4.17 6.02 0.00 13.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 1.33 0.00 0.00 0.00 1.67 1.96 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Map205,I_chr3R_27891135_27892050 chr3R - chr3R_27884492_27884653 chr3R_27884491_27884492;chr3R_27884653_27884654 chr3R_27882314_27884491;chr3R_27884654_27884867 79.31 78.46 79.59 90.85 87.50 84.00 86.96 78.29 80.90 71.43 68.57 83.77 75.00 75.79 82.56 88.16 78.16 75.28 85.57 71.52 82.61 96.08 85.59 78.79 80.39 85.88 80.43 71.43 70.37 75.00 78.86 80.65 74.60 77.12 86.76 80.56 74.58 69.23 75.81 80.00 63.41 82.10 81.33 87.50 76.00 77.36 79.31 66.67 80.00 82.05 77.53 79.10 85.71 76.92 80.19 82.22 72.00 63.83 K intron_retention CG3074,E_chr2R_18078002_18079006,I_chr2R_18079355_18089994 chr2R - chr2R_18078009_18078086 chr2R_18078008_18078009;chr2R_18078086_18078087 chr2R_18077320_18078008;chr2R_18078087_18079072 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.30 0.00 0.00 0.00 0.00 0.00 4.55 0.00 1.75 1.02 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 2.08 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG16974,I_chr2L_13189619_13191526 chr2L - chr2L_13189619_13191903 chr2L_13189619_13191526 chr2L_13189519_13189618;chr2L_13191904_13192008 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.51 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 NA 0.00 1.20 1.25 0.00 0.00 0.47 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K intron_retention PPP4R2r chrX + chrX_10374058_10374116 chrX_10374057_10374058;chrX_10374116_10374117 chrX_10373869_10374057;chrX_10374117_10375969 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chr3R_5088705_5088796,Aats-trp,RI_chr3R_5090799_5091007 chr3R - chr3R_5090799_5091007 chr3R_5090798_5090799;chr3R_5091007_5091008 chr3R_5090791_5090798;chr3R_5091008_5091107 98.81 98.82 100.00 98.81 100.00 100.00 99.40 100.00 99.20 100.00 100.00 99.05 100.00 97.87 97.92 98.75 100.00 97.14 100.00 99.01 100.00 97.73 96.92 98.96 97.18 97.83 96.62 99.37 97.22 98.75 94.67 98.11 96.36 98.88 96.72 98.55 98.85 95.83 98.73 98.88 97.78 97.98 100.00 97.35 97.44 97.96 97.40 97.30 100.00 99.34 96.67 96.43 100.00 98.84 100.00 100.00 100.00 97.92 K jcn_only_AA skpA chrX + chrX_550638_551136 chrX_550638_551131 chrX_550585_550637;chrX_551137_551937 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 NA NA NA NA 95.00 NA NA 100.00 NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA NA 100.00 NA 100.00 100.00 K jcn_only_AA CG8436,CG8444,Vps16A chr3R + chr3R_5085679_5085747 chr3R_5085679_5085732 chr3R_5085616_5085678;chr3R_5085748_5085801 77.78 NA NA 79.17 NA NA 77.78 83.33 63.64 NA NA 78.38 NA NA NA 81.48 NA NA 70.00 72.50 NA NA NA 75.00 NA NA NA NA NA NA NA NA NA 90.91 NA NA NA NA NA 85.00 NA 86.67 NA NA NA 69.57 NA NA 78.79 NA 60.00 NA 57.69 NA 100.00 NA 70.83 66.67 K alternative_acceptor Sap47,I_chr3R_11761076_11761674,I_chr3R_11761436_11761674,F_chr3R_11761635_11761698,E_chr3R_11761635_11761703 chr3R + chr3R_11761307_11761674;chr3R_11761307_11761698;chr3R_11761307_11761703 chr3R_11761307_11761561 chr3R_11761299_11761306;chr3R_11761704_11761774 31.48 33.33 25.00 40.00 35.00 27.27 26.47 40.82 31.34 40.00 28.00 34.00 30.00 37.93 36.67 33.33 40.74 36.00 29.41 30.16 21.74 30.00 25.00 30.00 35.00 28.00 29.03 36.36 33.33 35.48 32.50 26.32 34.09 36.73 25.00 29.03 32.00 25.00 23.08 28.26 29.41 31.48 37.50 30.30 22.73 25.00 34.62 30.00 31.91 33.33 27.50 31.82 26.67 38.89 34.29 43.75 33.33 22.92 K alternative_last_exon CG8920 chr2R + chr2R_16211917_16212352 chr2R_16211917_16212002 chr2R_16212353_16212835 chr2R_16212003_16212350 chr2R_16211798_16211916 11.90 9.09 8.11 22.22 7.14 7.14 21.05 17.50 12.50 11.54 8.70 13.33 24.14 16.67 7.69 11.90 7.41 13.33 15.62 12.00 7.69 20.00 8.97 10.14 11.76 13.33 8.06 12.96 11.63 12.00 12.12 13.89 16.07 18.37 10.87 6.67 7.89 11.63 5.48 16.18 26.19 11.43 10.53 18.18 5.56 17.86 8.82 17.14 12.96 11.69 13.89 14.29 6.82 10.94 17.95 11.48 5.80 18.18 K intron_retention CG11880,I_chr3R_24949827_24951052,CE_chr3R_24962426_24962797 chr3R + chr3R_24951460_24951528 chr3R_24951459_24951460;chr3R_24951528_24951529 chr3R_24951130_24951459;chr3R_24951529_24953969 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention sqd,I_chr3R_9462248_9471474,CR33328,I_chr3R_9468150_9468236,I_chr3R_9470417_9471474 chr3R - chr3R_9462248_9462692 chr3R_9462247_9462248;chr3R_9462692_9462693 chr3R_9462148_9462247;chr3R_9462693_9462800 12.50 14.29 NA NA 15.38 NA NA NA 19.05 NA NA 24.14 NA NA 12.50 NA NA 13.33 NA 45.00 NA 5.56 15.38 15.79 8.70 NA 23.53 31.25 7.69 7.41 NA 0.00 6.85 31.25 8.33 7.69 7.32 10.71 13.04 12.77 6.25 12.50 NA 13.16 4.05 6.67 19.23 4.76 37.50 26.32 38.10 NA 12.50 5.56 NA 13.64 10.53 4.40 K alternative_donor psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6445882_6449190 chr2R_6446039_6449190 chr2R_6449191_6449459;chr2R_6445413_6445881 92.31 100.00 83.33 92.86 100.00 92.86 95.24 97.37 91.30 100.00 91.67 88.57 89.47 94.12 93.33 96.55 94.12 92.86 91.30 81.58 100.00 66.67 85.00 92.86 80.00 87.50 81.25 88.89 77.78 83.33 93.75 100.00 88.24 88.89 93.33 100.00 94.12 100.00 84.62 90.62 81.82 94.29 87.50 94.44 90.91 92.86 90.91 96.00 95.00 91.67 95.00 92.31 85.71 85.71 85.71 100.00 90.00 100.00 K intron_retention sax,CG1882 chr2R + chr2R_3700238_3700785 chr2R_3700237_3700238;chr2R_3700785_3700786 chr2R_3700011_3700237;chr2R_3700786_3702250 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 98.78 100.00 99.05 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.53 98.80 100.00 100.00 100.00 98.41 98.48 97.30 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG32594 chrX + chrX_14927381_14927638 chrX_14927380_14927381;chrX_14927638_14927639 chrX_14927258_14927380;chrX_14927639_14928125 52.94 56.25 58.33 29.73 35.71 41.67 83.33 52.94 68.57 NA 34.62 50.00 NA 50.00 61.11 66.67 63.64 40.00 45.45 41.67 22.22 51.72 42.11 57.14 72.73 NA 59.09 56.25 38.46 NA 41.67 44.44 37.04 76.19 50.00 NA 61.11 56.25 37.50 48.39 NA 60.00 58.33 68.75 NA 38.89 46.15 NA 60.87 60.00 45.83 77.78 NA 60.00 46.67 58.33 58.33 NA K jcn_only_AD CG1814,Updo chr2R + chr2R_5467293_5467467 chr2R_5467342_5467467 chr2R_5467468_5467871;chr2R_5467024_5467292 63.14 61.54 75.00 89.66 NA NA 78.79 97.67 76.00 61.90 NA 59.62 NA 76.00 85.71 90.62 NA 75.86 80.77 64.71 NA 71.74 40.91 55.88 52.38 75.00 51.72 70.83 78.79 62.86 51.35 67.86 64.52 77.50 67.74 50.00 45.00 36.84 42.86 55.77 66.67 68.42 80.95 62.79 45.83 50.00 63.33 52.38 62.96 60.00 51.28 40.91 48.28 33.33 81.08 34.38 NA 66.67 K jcn_only_AA I_chr2L_10264634_10264770,Mob3,RI_chr2L_10265562_10265628 chr2L + chr2L_10265562_10265628 chr2L_10265562_10265620 chr2L_10265462_10265561;chr2L_10265629_10265728 100.00 NA 100.00 100.00 NA 93.75 95.08 100.00 97.87 NA NA 100.00 100.00 100.00 100.00 98.31 100.00 100.00 97.22 100.00 96.00 NA 91.30 NA NA 95.12 NA NA NA NA 93.10 NA NA 100.00 NA 100.00 NA NA 100.00 100.00 NA 97.92 100.00 NA NA NA 100.00 NA 97.37 100.00 NA NA NA NA 100.00 100.00 100.00 NA K intron_retention CG8920 chr2R + chr2R_16212836_16212893 chr2R_16212835_16212836;chr2R_16212893_16212894 chr2R_16212684_16212835;chr2R_16212894_16213042 0.00 0.00 0.00 4.17 0.00 6.67 0.00 0.00 1.82 0.00 0.00 0.00 0.00 4.76 0.00 7.14 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 K cassette Aldh-III,I_chr2R_3358388_3361226,I_chr2R_3360750_3360792,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3358388_3361226 chr2R_3358388_3360792;chr2R_3360852_3361226 chr2R_3360793_3360851 chr2R_3358288_3358387;chr2R_3361227_3361326 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG31638,I_chr2L_6494875_6494937 chr2L + chr2L_6495869_6496056 chr2L_6495868_6495869;chr2L_6496056_6496057 chr2L_6495677_6495868;chr2L_6496057_6496971 0.00 4.17 NA 9.52 NA NA 15.79 NA 5.88 NA NA 7.69 NA 0.00 NA 0.00 NA 0.00 13.33 2.94 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 8.33 6.67 11.76 NA 0.00 0.00 9.09 5.88 0.00 0.00 6.67 0.00 NA 13.33 0.00 0.00 0.00 K intron_retention CG32711,I_chrX_8302812_8302897 chrX - chrX_8302480_8302551 chrX_8302479_8302480;chrX_8302551_8302552 chrX_8302438_8302479;chrX_8302552_8302811 11.74 NA NA NA NA NA NA NA 15.79 NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention fon,I_chr2L_19385355_19385669,CE_chr2L_19385715_19386086,I_chr2L_19388570_19389922 chr2L - chr2L_19384037_19384084 chr2L_19384036_19384037;chr2L_19384084_19384085 chr2L_19383881_19384036;chr2L_19384085_19384475 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.52 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.60 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA SdhB chr2R + chr2R_2695323_2695594 chr2R_2695323_2695542 chr2R_2695116_2695322;chr2R_2695595_2696031 0.33 0.59 0.65 0.33 0.00 0.00 1.44 0.35 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.40 0.45 0.00 1.23 1.77 0.74 0.43 0.48 0.89 0.35 1.40 0.43 1.58 1.90 0.32 0.00 0.00 0.55 0.50 0.23 0.55 0.55 0.00 0.00 0.20 0.00 0.00 1.72 0.26 0.56 0.88 0.00 1.09 0.27 1.03 0.33 0.49 0.00 0.26 0.00 0.38 K alternative_donor Hsc70-3,I_chrX_11699076_11699138,I_chrX_11699076_11699158,I_chrX_11699076_11699260,EI_chrX_11699076_11699573,I_chrX_11699076_11700062 chrX - chrX_11699076_11699321;chrX_11699076_11699923 chrX_11699076_11699335 chrX_11698976_11699075;chrX_11699924_11699938 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 K intron_retention Arf51F,I_chr2R_11210733_11210953 chr2R + chr2R_11210536_11210953 chr2R_11210535_11210536;chr2R_11210953_11210954 chr2R_11210467_11210535;chr2R_11210954_11211053 82.61 63.64 88.89 88.24 66.67 81.82 78.26 77.27 73.08 NA 60.00 88.89 NA 84.62 100.00 63.64 81.82 92.31 90.00 82.61 NA 100.00 69.23 90.91 90.91 88.24 93.75 NA 90.91 87.50 71.43 NA 75.00 88.24 NA 96.00 90.00 72.73 80.00 76.47 84.62 83.33 83.33 90.00 72.73 75.00 91.67 64.71 82.35 NA NA 81.82 66.67 NA 85.71 81.82 NA 61.54 K jcn_only_AD mthl3 chr2R - chr2R_13338538_13338593;chr2R_13338538_13340067;chr2R_13338538_13340031;chr2R_13338538_13340007 chr2R_13338538_13339957 chr2R_13338407_13338537;chr2R_13340068_13340078 82.35 71.43 100.00 76.47 NA NA 64.52 74.00 83.67 NA 80.95 87.50 89.36 76.67 75.00 83.72 80.65 83.33 81.48 86.11 85.00 65.00 NA NA NA NA 96.00 NA NA NA 82.35 NA NA 82.00 80.77 NA NA NA NA NA NA 84.62 80.00 NA NA 91.30 NA 85.71 94.74 NA 80.00 NA NA NA 86.96 NA NA NA K intron_retention CG9426 chr2L - chr2L_13217294_13217360 chr2L_13217293_13217294;chr2L_13217360_13217361 chr2L_13216311_13217293;chr2L_13217361_13217616 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 3.70 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 4.88 2.99 3.39 0.00 0.00 5.45 4.35 2.22 0.00 0.00 0.00 1.79 0.00 0.00 0.00 4.11 0.00 3.33 7.32 0.00 1.82 0.00 0.00 0.00 0.00 2.27 3.03 0.00 9.09 0.00 0.00 0.00 0.00 0.00 5.00 4.17 4.55 K alternative_acceptor CG3907,I_chr2R_19909065_19909249,I_chr2R_19909692_19909755 chr2R - chr2R_19909608_19909755;chr2R_19909692_19909755 chr2R_19909635_19909755 chr2R_19909756_19909779;chr2R_19909592_19909607 50.00 NA NA 60.00 NA NA 54.55 57.14 50.00 NA NA 45.45 20.00 NA 50.00 61.54 NA NA 25.00 15.38 NA 37.50 NA NA NA 28.57 NA NA NA NA 42.86 66.67 60.00 45.45 NA NA NA NA NA 66.67 50.00 44.44 50.00 NA 57.14 NA NA NA 41.67 NA NA NA NA NA 57.14 25.00 50.00 57.14 K intron_retention RI_chr2L_1170364_1170429,CG4887,REI_chr2L_1179197_1179859 chr2L + chr2L_1175174_1175286 chr2L_1175173_1175174;chr2L_1175286_1175287 chr2L_1175047_1175173;chr2L_1175287_1175523 28.00 19.51 23.81 29.11 18.92 19.51 55.81 19.35 28.57 35.48 29.17 21.21 36.11 32.14 23.81 27.27 24.24 20.00 20.83 28.00 24.24 35.59 38.67 31.03 38.46 21.88 35.21 21.62 49.09 24.44 52.81 29.63 29.59 20.63 37.21 44.74 22.22 26.47 32.18 28.26 39.39 30.23 16.28 27.12 22.73 24.68 26.83 33.68 27.54 32.08 32.00 34.48 34.62 28.21 21.74 21.43 24.00 22.50 K cassette Csk,I_chr3R_7463337_7463512,I_chr3R_7468917_7472437,I_chr3R_7468917_7472509,I_chr3R_7468928_7472509 chr3R - chr3R_7463337_7472509 chr3R_7463337_7467997;chr3R_7468928_7472509 chr3R_7467998_7468927 chr3R_7463237_7463336;chr3R_7472510_7472537 96.94 96.35 98.17 96.55 96.77 98.43 94.89 96.45 95.67 94.31 98.13 95.93 90.79 92.92 96.69 97.35 97.83 94.29 96.26 94.07 98.85 97.74 98.17 96.89 98.39 93.75 95.93 97.78 98.15 98.72 95.71 98.44 98.12 96.50 98.46 95.21 98.89 97.66 99.51 97.04 95.56 95.33 96.94 96.75 96.67 98.21 96.59 96.41 98.28 96.94 97.16 97.35 98.53 98.48 95.45 94.94 97.59 98.78 K alternative_acceptor dlg1,I_chrX_11281967_11282030 chrX + chrX_11263833_11267849;chrX_11263833_11268301 chrX_11263833_11268289 chrX_11263820_11263832;chrX_11268302_11268531 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG16838,I_chr3L_16125390_16125510 chr3L + chr3L_16125390_16125485;chr3L_16125390_16125639 chr3L_16125390_16125588 chr3L_16125290_16125389;chr3L_16125640_16126338 11.11 18.18 15.00 24.00 23.08 16.67 14.29 20.83 9.09 9.09 10.00 17.86 7.69 8.33 15.79 21.43 10.00 5.88 11.11 5.56 7.69 5.88 11.11 11.11 12.50 7.69 16.67 20.00 15.38 5.88 13.33 8.33 8.33 11.11 23.08 16.67 20.00 18.18 10.00 5.41 8.33 6.90 20.00 6.67 8.33 10.00 12.50 9.52 11.76 14.29 0.00 12.50 0.00 11.11 12.50 20.00 10.00 2.70 K alternative_donor CG8188,I_chrX_17595810_17596205,I_chrX_17595810_17596592 chrX - chrX_17595810_17596233 chrX_17595810_17596205 chrX_17595710_17595809;chrX_17596234_17596305 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.49 0.39 1.49 0.00 0.99 1.19 0.00 0.00 0.00 1.14 0.84 0.70 0.30 0.81 0.00 0.00 0.00 0.00 0.73 0.95 2.67 1.82 0.87 0.66 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 1.15 0.00 0.66 0.00 0.00 0.52 0.50 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 K intron_retention CG1969 chr3R + chr3R_25567092_25567419 chr3R_25567091_25567092;chr3R_25567419_25567420 chr3R_25566873_25567091;chr3R_25567420_25567468 95.00 92.59 95.24 96.67 93.75 95.00 97.14 96.30 94.00 94.12 94.44 96.43 76.92 100.00 100.00 92.31 93.33 93.75 95.24 97.30 94.44 93.33 96.88 91.67 95.00 90.00 95.65 100.00 86.67 89.47 100.00 100.00 97.30 97.37 100.00 100.00 95.24 91.67 96.43 89.47 95.65 97.14 96.00 88.89 88.00 94.44 96.15 85.19 95.00 89.29 96.67 94.12 97.06 87.10 92.86 88.89 93.33 92.86 K intron_retention CG5594,CG2812 chr2R + chr2R_19812279_19812340 chr2R_19812278_19812279;chr2R_19812340_19812341 chr2R_19812139_19812278;chr2R_19812341_19812346 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.75 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 K intron_retention CG31633 chr2L - chr2L_6656142_6656195 chr2L_6656141_6656142;chr2L_6656195_6656196 chr2L_6656065_6656141;chr2L_6656196_6656264 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA 2.56 3.23 0.00 NA NA 0.00 2.56 14.71 6.25 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 4.35 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 K intron_retention Bmcp,RI_chr3L_11714462_11715104 chr3L + chr3L_11715519_11715571 chr3L_11715518_11715519;chr3L_11715571_11715572 chr3L_11715105_11715518;chr3L_11715572_11715632 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.73 0.00 0.00 0.00 1.12 2.56 0.00 0.00 1.20 0.00 0.00 0.00 1.37 0.00 0.00 0.00 2.00 1.27 0.00 0.00 0.00 2.61 0.00 0.00 1.32 2.47 0.00 2.67 0.00 2.06 0.00 0.00 0.00 1.01 2.70 0.00 1.76 3.31 0.00 0.00 0.00 1.32 0.00 1.35 2.00 0.00 0.95 N intron_retention CG2201 chr2L - chr2L_21623130_21623365 chr2L_21623129_21623130;chr2L_21623365_21623366 chr2L_21623366_21623540 29.29 NA NA NA NA NA NA 25.00 38.10 NA NA NA NA NA NA 29.41 NA NA NA 28.57 NA NA NA NA NA NA NA NA NA NA NA NA NA 35.71 NA NA NA NA NA NA NA 29.17 NA NA NA NA NA NA 31.25 NA NA NA NA NA 28.57 NA NA NA K intron_retention Klp3A,Bzd chrX - chrX_2496879_2496951 chrX_2496878_2496879;chrX_2496951_2496952 chrX_2496727_2496878;chrX_2496952_2497631 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 3.45 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K cassette wls chr3L - chr3L_11160709_11161236 chr3L_11160709_11160918;chr3L_11161015_11161236 chr3L_11160919_11161014 chr3L_11159717_11160708;chr3L_11161237_11162713 6.52 3.39 10.17 2.88 3.92 10.26 4.23 11.11 6.84 2.86 8.33 6.52 20.00 8.33 9.26 10.77 10.42 15.38 9.80 9.28 14.00 8.57 5.43 4.94 4.88 5.45 8.57 16.67 1.82 3.64 9.30 5.00 7.89 8.86 9.68 0.00 4.49 3.70 2.90 13.64 6.52 6.73 5.77 2.90 4.17 5.77 4.55 5.41 6.12 5.77 11.69 6.82 4.65 6.52 6.25 10.17 7.14 8.93 K intron_retention PpD3,CG8412,I_chr3R_5583152_5583200 chr3R + chr3R_5574124_5574333 chr3R_5574123_5574124;chr3R_5574333_5574334 chr3R_5573897_5574123;chr3R_5574334_5574575 0.00 0.00 3.49 2.72 1.27 2.22 2.26 0.74 1.05 0.00 0.00 1.36 0.00 0.00 1.89 1.52 0.00 0.00 0.00 1.17 2.22 0.00 0.00 0.00 4.08 0.00 0.76 1.96 0.00 1.98 0.00 0.00 1.85 0.74 0.00 2.47 0.00 0.00 0.00 1.47 0.00 0.00 3.39 1.41 0.00 0.82 0.00 2.14 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Su(dx),RE_chr2L_2038009_2039919,CG31672 chr2L + chr2L_2042852_2042913 chr2L_2042851_2042852;chr2L_2042913_2042914 chr2L_2042666_2042851;chr2L_2042914_2044359 0.00 0.00 0.00 5.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 5.45 3.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1381 chr2R - chr2R_5986591_5986650 chr2R_5986590_5986591;chr2R_5986650_5986651 chr2R_5986023_5986590;chr2R_5986651_5986898 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 1.19 0.00 0.00 1.32 0.00 0.00 K jcn_only_AA CG5521 chr3R + chr3R_22795518_22796048;chr3R_22795518_22796349 chr3R_22795518_22796373 chr3R_22795407_22795517 100.00 NA 94.59 91.43 100.00 NA 96.15 94.29 96.61 100.00 NA 90.24 91.67 96.97 97.50 100.00 100.00 100.00 97.44 100.00 NA 100.00 100.00 100.00 100.00 96.67 95.12 100.00 100.00 100.00 94.59 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA 96.97 100.00 NA 97.30 100.00 NA NA 100.00 NA NA NA K cassette Pep,I_chr3L_17637180_17637918 chr3L - chr3L_17633154_17636462 chr3L_17633154_17634125;chr3L_17634356_17636462 chr3L_17634126_17634355 chr3L_17631217_17633153;chr3L_17636463_17636826 89.52 94.47 92.92 94.44 95.28 98.00 91.04 94.38 95.89 85.71 88.37 95.67 98.91 98.17 96.88 95.90 95.28 94.78 96.49 94.83 91.86 78.40 89.52 88.01 85.63 94.12 85.92 85.00 76.77 87.21 80.47 84.76 88.08 96.22 86.14 88.60 87.08 92.63 87.50 85.86 85.44 94.50 99.05 82.78 88.54 91.88 89.45 85.42 95.17 88.42 88.10 92.26 88.31 85.20 96.50 86.27 87.74 90.45 K intron_retention Psa,I_chr3L_1518053_1518213 chr3L + chr3L_1518053_1518176 chr3L_1518052_1518053;chr3L_1518176_1518177 chr3L_1517992_1518052;chr3L_1518177_1518796 9.29 NA NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA 5.26 NA NA NA NA NA NA NA NA NA 0.00 K intron_retention rl,RI_chr2RHet_203476_203577,RI_chr2RHet_203592_207044,R_chr2RHet_207162_232568,I_chr2RHet_232696_247338,RI_chr2RHet_240197_247338 chr2RHet + chr2RHet_207156_232560 chr2RHet_207155_207156;chr2RHet_232560_232561 chr2RHet_207062_207155;chr2RHet_232561_232695 2.82 0.00 2.27 2.15 0.00 8.33 3.57 3.79 2.42 NA 6.25 2.97 0.00 3.17 4.88 3.54 2.94 0.00 0.00 3.03 0.00 0.00 6.82 2.27 9.52 0.00 5.26 15.38 4.00 6.06 3.77 0.00 3.57 3.06 9.68 3.23 0.00 0.00 0.00 0.00 0.00 3.08 7.84 0.00 0.00 2.70 0.00 5.41 2.94 0.00 4.08 0.00 0.00 0.00 0.00 3.23 7.14 2.38 K jcn_only_AD CG31313,REI_chr3R_10392729_10393060,I_chr3R_10394322_10394381,RI_chr3R_10400799_10401492 chr3R - chr3R_10392729_10392886 chr3R_10392729_10392875 chr3R_10392629_10392728;chr3R_10392887_10392898 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA K intron_retention CG1572 chrX - chrX_11450145_11450216 chrX_11450144_11450145;chrX_11450216_11450217 chrX_11449959_11450144;chrX_11450217_11450379 0.57 0.59 0.33 2.07 0.54 0.34 2.42 0.33 0.70 0.74 1.22 0.41 0.13 0.58 0.50 0.56 0.47 0.42 0.57 0.66 0.89 2.37 0.80 0.60 1.79 2.14 1.21 2.31 1.11 0.44 0.96 0.24 0.89 0.47 0.70 3.92 0.53 0.46 0.57 0.65 1.39 0.58 0.59 0.61 0.57 0.44 0.53 0.35 0.60 0.46 0.55 0.56 0.34 0.54 0.45 0.40 0.80 0.36 K jcn_only_AA RabX4 chr3R - chr3R_20653347_20653557 chr3R_20653378_20653557 chr3R_20653558_20653672;chr3R_20653054_20653346 9.52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.54 NA NA NA NA NA 9.52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.09 NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG6923 chr3R - chr3R_7574457_7574511 chr3R_7574456_7574457;chr3R_7574511_7574512 chr3R_7571080_7574456;chr3R_7574512_7574681 29.29 20.00 28.00 39.13 36.84 33.33 36.67 40.74 24.59 12.50 23.81 26.42 29.17 39.13 36.36 43.48 33.33 26.32 45.00 36.36 36.36 30.30 10.71 14.81 15.00 26.32 35.90 30.77 24.00 25.93 36.36 NA 34.38 37.14 31.58 35.29 12.82 20.00 11.11 19.44 29.41 35.90 41.18 27.78 26.32 18.75 21.43 25.00 34.15 29.41 33.33 33.33 NA NA 28.00 14.29 25.00 19.23 K alternative_donor CG15173,RI_chr2L_19044304_19044369 chr2L - chr2L_19043884_19043945;chr2L_19043884_19043931 chr2L_19043884_19043935 chr2L_19043535_19043883;chr2L_19043946_19044083 100.00 NA NA 88.89 NA NA NA NA NA NA NA 87.50 NA NA NA 85.71 NA NA NA 100.00 NA NA NA 100.00 NA 100.00 NA NA NA NA 91.67 NA NA NA NA NA NA NA NA NA NA 90.91 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 100.00 NA K jcn_only_AD CG1657 chrX + chrX_11219635_11222056;chrX_11219604_11222056 chrX_11219544_11222056 chrX_11222057_11222225;chrX_11219475_11219543 100.00 96.55 100.00 100.00 NA NA NA 97.22 100.00 100.00 NA 100.00 NA 100.00 92.59 100.00 NA 100.00 96.43 100.00 100.00 100.00 100.00 97.44 100.00 100.00 97.73 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 97.50 100.00 100.00 96.67 99.07 100.00 100.00 96.00 100.00 NA 96.15 100.00 100.00 97.87 100.00 98.31 100.00 NA NA 100.00 NA NA 100.00 N jcn_only_AA spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20334731_20339244 chr2L_20334731_20336286 chr2L_20334627_20334730 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.21 100.00 100.00 100.00 100.00 100.00 100.00 94.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG8468 chr2R + chr2R_10108271_10114915 chr2R_10108270_10108271;chr2R_10114915_10114916 chr2R_10108113_10108270;chr2R_10114916_10116800 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.45 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.33 0.00 1.32 0.41 0.55 0.00 0.00 1.48 1.24 0.00 0.32 0.00 0.00 0.00 0.28 0.41 0.00 0.00 0.33 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ash2 chr3R + chr3R_20477964_20478031 chr3R_20477963_20477964;chr3R_20478031_20478032 chr3R_20477583_20477963;chr3R_20478032_20478312 0.00 0.00 1.47 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 K alternative_donor CG4365 chr3L + chr3L_20791960_20792242;chr3L_20792089_20792242;chr3L_20791819_20792242;chr3L_20792100_20792242 chr3L_20792077_20792242 chr3L_20792243_20793181;chr3L_20791802_20791818 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD E(bx),I_chr3L_246324_246699 chr3L - chr3L_246324_246885;chr3L_246324_246438;chr3L_246324_246408;chr3L_246324_246794;chr3L_246324_246388;chr3L_246324_246427 chr3L_246324_246382 chr3L_246224_246323;chr3L_246886_246901 48.42 46.81 57.41 54.55 45.00 42.22 46.15 42.11 42.16 56.41 54.55 51.65 47.17 36.36 50.00 43.96 45.00 46.94 46.43 48.36 38.78 59.15 54.29 48.48 37.50 46.55 62.26 48.65 53.85 51.06 45.59 NA 64.52 43.02 52.50 35.85 49.02 51.61 45.65 69.86 NA 49.38 46.94 62.26 NA NA NA 53.57 45.45 NA 39.44 51.43 NA NA 52.83 NA NA NA K jcn_only_AD CG7420 chr2L - chr2L_1501037_1501098 chr2L_1501037_1501096 chr2L_1500970_1501036;chr2L_1501099_1501164 100.00 NA 95.24 100.00 NA 100.00 96.00 100.00 94.29 NA NA 96.15 NA NA 100.00 100.00 95.45 NA 100.00 97.78 NA 100.00 100.00 95.24 NA 100.00 95.00 NA NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 100.00 98.08 100.00 100.00 NA NA 97.62 98.04 96.30 98.18 97.44 100.00 100.00 NA 100.00 100.00 96.00 100.00 100.00 94.23 K intron_retention CG15098,I_chr2R_14721290_14721355 chr2R - chr2R_14721290_14721355 chr2R_14721289_14721290;chr2R_14721355_14721356 chr2R_14721190_14721289;chr2R_14721356_14721455 95.83 NA NA 100.00 NA NA 95.83 91.67 90.91 NA 91.67 90.91 NA NA 100.00 100.00 NA NA NA 92.31 100.00 77.78 92.31 81.82 88.89 NA 100.00 94.74 94.74 NA 100.00 NA NA 100.00 NA 88.89 100.00 NA NA 100.00 NA 90.91 NA 90.91 NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA NA NA NA NA K cassette Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24347423_24348203 chr3R_24347423_24347536;chr3R_24347954_24348203 chr3R_24347537_24347953 chr3R_24347264_24347422;chr3R_24348204_24348354 100.00 100.00 98.28 96.46 100.00 98.28 100.00 99.15 99.28 97.50 100.00 100.00 100.00 100.00 98.65 100.00 100.00 98.63 100.00 99.53 98.00 97.59 99.03 98.61 98.41 97.78 100.00 100.00 100.00 97.37 100.00 100.00 100.00 98.61 100.00 98.10 100.00 100.00 97.73 100.00 100.00 99.19 100.00 98.72 100.00 100.00 100.00 98.67 99.19 97.22 100.00 97.22 100.00 98.59 100.00 100.00 100.00 100.00 K alternative_donor CG10277,I_chr3R_2211644_2211724,I_chr3R_2211939_2212057 chr3R + chr3R_2211644_2211724 chr3R_2211664_2211724 chr3R_2211725_2211824;chr3R_2211544_2211643 95.79 95.24 93.33 92.31 98.15 96.23 97.09 97.12 97.58 97.73 98.28 98.13 93.85 95.08 98.39 98.68 98.04 96.08 96.67 94.41 100.00 95.69 93.65 95.18 92.54 94.74 95.79 89.29 84.38 93.59 86.81 97.56 95.89 95.24 90.00 91.57 97.53 96.97 97.70 97.44 98.41 95.38 96.08 93.33 97.96 96.84 98.86 95.65 94.34 92.31 93.10 93.33 91.49 95.24 98.57 98.46 98.28 90.70 K alternative_acceptor Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11835109_11835509 chr2R_11835112_11835509 chr2R_11835510_11836215;chr2R_11834432_11835108 98.39 98.21 97.22 100.00 100.00 96.55 96.97 100.00 98.82 100.00 100.00 98.48 100.00 96.30 94.87 96.77 100.00 96.67 96.97 98.53 96.43 100.00 100.00 98.55 100.00 100.00 100.00 100.00 100.00 98.04 96.67 97.78 96.67 97.50 93.33 97.78 97.52 100.00 97.40 98.77 100.00 98.70 95.83 98.72 97.01 98.21 100.00 97.67 98.31 98.39 100.00 97.56 100.00 98.00 100.00 97.22 97.78 100.00 K intron_retention CG18094,swm chr2L + chr2L_19495736_19495810 chr2L_19495735_19495736;chr2L_19495810_19495811 chr2L_19494560_19495735;chr2L_19495811_19496869 98.75 97.87 98.75 99.22 100.00 98.77 99.13 100.00 99.40 98.15 96.36 97.28 98.48 96.20 100.00 99.12 98.57 100.00 100.00 98.06 97.10 97.01 97.64 99.13 98.75 97.50 100.00 97.73 97.33 98.55 98.81 98.04 100.00 98.26 98.70 98.95 99.15 100.00 99.16 97.58 100.00 97.63 98.67 100.00 98.53 98.95 100.00 98.80 100.00 99.22 99.24 96.67 98.08 100.00 97.83 96.55 97.75 98.77 K alternative_donor norpA,I_chrX_4219265_4219380 chrX + chrX_4254739_4255998 chrX_4255142_4255998 chrX_4255999_4256951;chrX_4254649_4254738 50.00 55.00 40.00 47.37 50.00 39.13 73.81 45.24 55.93 64.29 63.64 61.29 55.56 54.55 50.00 41.67 54.55 42.86 48.28 50.00 50.00 65.00 50.00 55.00 71.43 39.39 60.87 100.00 60.00 43.33 29.41 55.56 41.94 53.33 39.29 30.00 76.92 50.00 42.86 40.35 36.36 51.92 48.00 44.00 26.32 35.29 35.29 53.19 64.44 41.18 62.50 52.63 40.00 41.67 48.28 33.33 42.11 32.43 K intron_retention Myo61F,mtacp1,I_chr3L_1330291_1330865,I_chr3L_1330291_1331279,RI_chr3L_1330929_1331041,l(3)02640 chr3L + chr3L_1330291_1330862 chr3L_1330290_1330291;chr3L_1330862_1330863 chr3L_1330191_1330290;chr3L_1330863_1330928 4.43 3.43 3.30 3.13 4.18 2.88 3.62 4.85 4.43 5.76 4.63 3.68 8.53 5.80 5.72 8.00 5.21 3.23 4.28 4.28 4.29 10.94 4.38 4.11 6.74 5.20 5.82 5.38 6.10 2.65 8.82 5.95 3.43 4.30 3.76 9.05 3.03 3.43 2.91 4.49 5.15 3.74 5.61 5.34 3.81 4.37 2.99 5.52 4.43 5.62 5.97 3.85 4.93 4.92 4.00 4.33 3.57 4.97 K alternative_acceptor I_chrX_15223901_15223968,HDAC6,I_chrX_15232958_15233665 chrX + chrX_15229302_15229382 chrX_15229302_15229355 chrX_15229023_15229301;chrX_15229383_15229421 0.00 0.00 NA 7.14 NA NA 0.00 3.85 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 11.11 NA NA 0.00 11.76 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 2.78 0.00 0.00 NA NA NA 0.00 NA NA 0.00 K alternative_acceptor CG9776,CG9772 chr3R - chr3R_161636_161730 chr3R_161668_161730 chr3R_161731_161797;chr3R_161571_161635 99.00 97.22 98.48 100.00 100.00 97.92 98.94 98.94 99.26 100.00 100.00 99.00 100.00 100.00 100.00 98.48 100.00 100.00 100.00 99.24 100.00 100.00 98.90 98.89 100.00 100.00 98.61 100.00 100.00 98.04 98.61 100.00 100.00 98.85 97.62 97.67 98.00 98.51 99.00 98.98 100.00 99.15 100.00 98.51 98.08 97.18 98.80 97.78 98.99 100.00 98.95 100.00 100.00 98.33 98.57 97.30 100.00 100.00 K jcn_only_AD CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042891_5043077;chr2L_5042891_5042983 chr2L_5042891_5042960 chr2L_5042835_5042890;chr2L_5043078_5043083 75.26 75.70 71.17 65.29 71.64 69.23 79.10 70.34 70.25 73.49 71.67 70.35 64.00 66.99 65.93 69.34 59.76 78.75 70.73 71.54 57.14 82.05 77.27 74.79 77.23 78.41 85.39 72.16 82.57 81.08 71.20 84.62 79.34 70.48 80.36 75.26 81.32 76.00 86.09 80.17 86.72 68.64 63.64 87.07 85.00 78.00 78.70 91.10 73.89 63.81 76.47 60.00 69.35 82.89 62.50 75.70 76.47 85.34 N intron_retention CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525393_1529105 chr3L_1525392_1525393;chr3L_1529105_1529106 chr3L_1525293_1525392;chr3L_1529106_1529206 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 45.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 K intron_retention CG34413,RI_chr2R_20769295_20770153,I_chr2R_20771136_20772048,I_chr2R_20773500_20774745 chr2R + chr2R_20769471_20770153 chr2R_20769470_20769471;chr2R_20770153_20770154 chr2R_20769095_20769470;chr2R_20770154_20770253 69.23 66.67 70.00 69.23 NA NA 66.67 55.56 71.43 NA NA 72.73 NA NA NA 53.85 NA NA 88.89 63.16 NA 97.14 61.11 53.33 NA NA 64.71 88.89 93.75 77.78 NA NA 90.00 NA NA 90.00 53.33 NA NA 55.56 NA 69.23 NA NA NA NA NA NA 69.23 NA 46.67 NA NA NA 63.64 NA NA NA K jcn_only_AA Sply chr2R - chr2R_12977881_12979314 chr2R_12979029_12979314 chr2R_12979315_12979407 90.91 95.45 96.49 63.64 83.78 94.20 81.25 88.89 94.12 90.91 90.00 87.60 95.45 95.56 96.08 91.67 86.67 93.62 92.59 93.69 86.84 85.11 89.80 90.00 81.25 91.18 86.84 85.71 87.23 90.91 88.75 92.73 90.48 93.15 92.50 90.91 86.67 86.84 91.94 96.43 82.86 98.31 96.55 97.73 97.78 94.03 86.05 94.74 91.94 71.43 81.63 73.33 100.00 90.00 92.54 87.50 92.59 97.14 K intron_retention Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4833234_4834454 chrX_4833233_4833234;chrX_4834454_4834455 chrX_4833206_4833233;chrX_4834455_4834880 20.94 25.00 30.77 18.52 NA NA 26.32 14.29 16.36 NA NA 15.00 26.32 15.79 30.77 22.22 19.05 NA 19.05 14.71 NA 26.67 NA NA NA NA NA NA NA 5.88 31.25 NA 11.43 29.03 NA NA NA NA NA NA NA 21.88 30.77 NA NA NA NA 19.05 20.00 NA NA NA NA NA 29.41 NA NA NA K intron_retention sd,noncoding_23930,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15706472_15707881 chrX_15706471_15706472;chrX_15707881_15707882 chrX_15706468_15706471;chrX_15707882_15708324 96.29 92.86 100.00 96.15 100.00 94.12 95.65 95.24 97.56 100.00 100.00 100.00 100.00 90.48 95.65 100.00 100.00 100.00 94.74 96.08 100.00 95.83 100.00 88.24 100.00 100.00 93.33 95.24 96.77 91.18 95.24 100.00 100.00 96.15 100.00 100.00 94.44 94.12 91.67 97.73 94.12 96.55 93.75 94.44 100.00 100.00 90.00 98.15 94.74 100.00 100.00 92.31 100.00 NA 96.43 92.31 85.71 96.15 K jcn_only_AD Trn chr3L + chr3L_6186644_6187144 chr3L_6186723_6187144 chr3L_6187145_6187250;chr3L_6186603_6186643 95.00 89.66 94.87 95.00 NA 95.83 91.86 96.83 92.86 NA 96.55 98.72 84.85 94.59 94.64 96.23 92.31 86.49 94.00 95.56 95.12 98.99 100.00 95.00 90.91 95.83 97.22 98.15 95.24 94.23 93.10 NA NA 89.61 97.67 100.00 95.65 NA 90.32 100.00 NA 95.38 84.85 94.34 NA NA NA 94.29 100.00 NA 97.56 NA NA NA 93.88 NA NA NA K intron_retention ras chrX + chrX_10638695_10638811 chrX_10638694_10638695;chrX_10638811_10638812 chrX_10638539_10638694;chrX_10638812_10638943 100.00 100.00 95.00 100.00 100.00 95.83 100.00 97.37 98.04 100.00 100.00 100.00 95.65 95.45 100.00 97.78 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 95.83 96.67 100.00 97.14 100.00 96.77 100.00 96.67 95.83 100.00 95.65 100.00 100.00 96.00 100.00 100.00 96.88 93.33 95.45 93.75 100.00 97.56 95.83 100.00 100.00 NA 100.00 100.00 90.91 100.00 100.00 K intron_retention Spred,I_chr2R_10655876_10656868 chr2R - chr2R_10650514_10651335 chr2R_10650513_10650514;chr2R_10651335_10651336 chr2R_10650450_10650513;chr2R_10651336_10651504 86.67 83.72 95.83 78.38 92.59 91.30 96.67 88.10 84.51 90.00 89.29 85.19 90.00 91.67 97.30 87.18 84.00 88.00 85.71 84.48 95.65 82.05 84.48 91.89 81.48 87.50 86.05 69.23 83.33 94.87 86.67 85.19 88.10 94.74 82.93 64.44 85.71 75.86 91.43 82.54 77.14 93.88 95.24 83.33 71.88 90.91 82.22 82.86 98.04 69.77 89.80 66.67 86.67 82.05 89.74 93.94 84.00 86.67 K intron_retention CG17352,I_chr3L_8351006_8351949,I_chr3L_8351036_8351655 chr3L - chr3L_8348649_8348711 chr3L_8348648_8348649;chr3L_8348711_8348712 chr3L_8348307_8348648;chr3L_8348712_8348733 23.08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K mutually_exclusive CG3209,I_chr2R_19957751_19959513,RI_chr2R_19957766_19960227,I_chr2R_19959163_19959513 chr2R + chr2R_19957766_19959517,chr2R_19959748_19960227 chr2R_19957766_19958290,chr2R_19958528_19960227 chr2R_19959518_19959747 chr2R_19958291_19958527 chr2R_19957666_19957765;chr2R_19960228_19960327 7.41 3.45 6.06 13.64 5.26 11.76 18.75 16.13 8.89 6.25 7.14 17.74 30.00 10.53 7.69 7.69 8.00 1.61 8.70 11.76 2.38 18.18 5.66 5.88 7.14 6.67 11.11 6.90 4.17 8.33 8.57 4.00 3.12 10.26 9.52 5.41 4.17 9.09 3.92 6.25 7.41 7.50 12.50 7.32 2.78 4.65 6.06 7.69 10.53 7.69 10.53 11.76 3.12 5.88 10.00 6.25 6.12 5.56 K alternative_acceptor CG14614,RI_chrX_21856027_21856279,REI_chrX_21856047_21856229,RI_chrX_21856896_21857109 chrX - chrX_21856027_21856229 chrX_21856047_21856229 chrX_21856230_21856329;chrX_21855947_21856026 0.00 0.00 0.00 0.72 1.41 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 1.10 1.23 0.97 0.00 1.30 0.00 0.98 0.00 0.00 0.72 0.00 0.00 0.00 0.99 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Actn,I_chrX_1922061_1924247 chrX - chrX_1921905_1921967 chrX_1921904_1921905;chrX_1921967_1921968 chrX_1921554_1921904;chrX_1921968_1922060 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG15107,I_chr2R_14859289_14859333 chr2R - chr2R_14859289_14859333;chr2R_14859281_14859333 chr2R_14859269_14859333 chr2R_14859334_14859398;chr2R_14859203_14859268 42.31 47.06 50.00 40.00 42.86 41.67 50.00 47.37 41.03 37.50 41.18 50.00 40.00 33.33 57.14 38.89 60.00 43.48 44.44 44.00 47.62 41.67 34.62 42.31 45.00 40.00 43.48 37.50 44.00 36.00 51.85 47.73 31.71 50.00 56.52 44.44 38.46 33.33 41.94 34.69 32.50 39.58 36.00 50.00 41.46 54.55 46.15 50.98 35.42 29.03 47.83 56.25 45.45 41.18 34.62 48.39 39.39 40.23 K intron_retention wun2,I_chr2R_5304606_5304660 chr2R + chr2R_5305074_5305137 chr2R_5305073_5305074;chr2R_5305137_5305138 chr2R_5305008_5305073;chr2R_5305138_5305166 95.34 NA NA 100.00 NA NA 100.00 NA 72.73 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 94.12 100.00 NA NA 91.67 NA 87.50 NA NA NA NA 96.55 NA NA NA NA 97.14 70.00 NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA NA NA N intron_retention Moe,I_chrX_8774434_8791759 chrX - chrX_8769771_8770605 chrX_8769770_8769771;chrX_8770605_8770606 chrX_8769127_8769770;chrX_8770606_8770785 99.47 98.29 98.92 100.00 100.00 98.70 100.00 99.04 100.00 98.04 100.00 99.40 100.00 98.58 100.00 100.00 100.00 100.00 100.00 99.37 100.00 97.96 97.90 98.26 100.00 100.00 100.00 98.41 98.99 97.77 100.00 100.00 97.68 98.77 100.00 100.00 98.36 100.00 100.00 99.04 100.00 99.47 100.00 100.00 98.57 98.97 97.79 99.54 98.77 98.01 98.04 98.10 100.00 98.30 100.00 100.00 97.47 99.23 K alternative_donor RluA-2,I_chr2L_10480906_10481097 chr2L + chr2L_10477593_10481097 chr2L_10480906_10481097 chr2L_10481098_10481197;chr2L_10477493_10477592 0.00 0.00 0.00 0.00 0.00 NA 4.35 5.56 2.94 NA NA 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33.33 NA 0.00 5.26 0.00 0.00 5.56 0.00 NA 0.00 0.00 0.00 0.00 NA 3.85 0.00 0.00 NA 0.00 0.00 0.00 4.76 0.00 0.00 NA 0.00 0.00 7.69 NA 5.88 0.00 K multi_cassette PhKgamma,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11592631_11597322 chrX_11592631_11593355;chrX_11593440_11594653;chrX_11595165_11597322 chrX_11593356_11593439;chrX_11594654_11595164 chrX_11592533_11592630;chrX_11597323_11597422 10.00 NA NA NA NA NA NA 10.00 9.09 NA NA 50.00 0.00 NA NA NA NA NA NA 7.14 NA 0.00 10.00 NA NA NA 9.09 NA NA 10.00 NA NA NA NA 10.00 NA NA NA 10.00 7.69 NA 7.69 NA 12.50 NA 15.38 NA 0.00 12.50 10.00 14.29 NA NA NA NA NA NA NA K alternative_acceptor Sirt4,RI_chrX_5565547_5565601 chrX - chrX_5559520_5559720 chrX_5559661_5559720 chrX_5559721_5560000;chrX_5558891_5559519 0.00 NA NA NA NA NA NA NA 0.00 NA NA 7.69 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA K intron_retention CG4896,REI_chr2L_1179197_1179859,I_chr2L_1191535_1191648 chr2L + chr2L_1179938_1179996 chr2L_1179937_1179938;chr2L_1179996_1179997 chr2L_1179860_1179937;chr2L_1179997_1180123 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 5.00 0.00 0.00 0.00 0.00 0.00 NA 19.23 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 NA K intron_retention Anxb11,I_chrX_16314152_16315813 chrX - chrX_16312058_16312113 chrX_16312057_16312058;chrX_16312113_16312114 chrX_16311989_16312057;chrX_16312114_16312323 0.00 0.96 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.51 0.00 1.47 0.00 2.44 0.00 0.00 0.00 1.63 0.00 1.80 0.00 0.83 0.00 0.00 0.80 0.00 1.72 1.22 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 1.09 2.47 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 K alternative_acceptor CG3680,Pka-R1 chr3L + chr3L_20804551_20804629 chr3L_20804551_20804623 chr3L_20804081_20804550;chr3L_20804630_20805297 95.12 80.00 95.45 96.00 92.86 100.00 94.74 95.45 87.10 92.86 91.67 100.00 100.00 92.86 100.00 94.44 100.00 100.00 92.31 96.88 93.75 90.00 96.67 95.45 92.86 92.86 95.24 96.77 100.00 96.30 87.50 96.00 92.16 95.83 95.00 96.15 100.00 90.00 87.50 98.67 93.33 95.12 90.91 96.15 97.14 92.86 92.86 93.94 93.94 90.00 96.15 81.82 100.00 100.00 94.44 100.00 100.00 90.00 K intron_retention trx chr3R - chr3R_10103265_10104814 chr3R_10103264_10103265;chr3R_10104814_10104815 chr3R_10102498_10103264;chr3R_10104815_10104893 6.67 NA NA 15.00 NA NA 5.56 9.09 14.29 NA NA 6.67 NA NA NA 0.00 NA NA NA 0.00 NA 71.43 4.55 NA NA NA NA NA NA 14.29 NA NA 6.67 5.26 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA 17.65 10.71 NA NA NA NA NA NA NA NA NA K alternative_donor scu,RhoGAP16F chrX + chrX_17987656_17989117;chrX_17988131_17989117;chrX_17987638_17989117 chrX_17988127_17989117 chrX_17989118_17990486;chrX_17987544_17987637 21.43 30.00 18.18 30.77 0.00 30.77 33.33 23.53 13.79 20.00 12.50 23.81 50.00 20.00 7.14 35.00 30.77 20.00 25.00 17.86 50.00 20.00 18.18 16.67 50.00 9.09 45.45 33.33 22.22 33.33 18.57 12.50 8.33 21.05 75.00 16.67 20.00 18.18 11.11 41.18 12.50 32.00 33.33 18.18 25.00 21.43 40.00 7.69 17.39 36.36 46.67 25.00 40.00 14.29 21.43 36.36 20.00 28.57 K jcn_only_AA RluA-2,I_chr2L_10480906_10481097 chr2L + chr2L_10481571_10481621;chr2L_10481571_10481629 chr2L_10481571_10481646 chr2L_10481509_10481570;chr2L_10481647_10481707 25.00 NA 25.00 21.05 NA NA 23.33 33.33 14.29 NA 25.00 20.59 25.00 NA 27.59 37.84 NA NA 15.00 28.30 NA 43.48 20.00 NA NA 25.00 18.18 NA 20.83 42.86 50.82 NA 29.63 31.25 33.33 NA NA NA 18.18 18.87 36.00 20.51 NA 20.00 19.05 29.73 16.67 25.71 32.43 NA 17.24 NA 33.33 29.17 20.00 23.08 NA 41.30 K intron_retention CG6597,noncoding_13714 chr3L + chr3L_20295603_20296166 chr3L_20295602_20295603;chr3L_20296166_20296167 chr3L_20295573_20295602;chr3L_20296167_20296215 0.00 NA NA 0.00 NA NA 3.70 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 6.67 NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K multi_cassette shot,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9753001_9753953 chr2R_9753001_9753323;chr2R_9753411_9753565;chr2R_9753632_9753953 chr2R_9753324_9753410;chr2R_9753566_9753631 chr2R_9752056_9753000;chr2R_9753954_9754137 98.63 97.50 100.00 95.95 100.00 100.00 93.75 100.00 98.33 55.32 94.59 100.00 100.00 100.00 97.50 100.00 93.62 100.00 97.37 94.74 96.43 100.00 95.52 96.15 96.97 96.77 100.00 100.00 97.37 100.00 97.78 100.00 97.14 100.00 100.00 96.43 98.68 96.77 97.73 97.87 100.00 96.33 100.00 100.00 97.06 100.00 98.04 100.00 98.63 97.56 100.00 100.00 100.00 100.00 100.00 97.92 98.04 100.00 K jcn_only_AA CG3680,Pka-R1 chr3L + chr3L_20804551_20804629 chr3L_20804551_20804623 chr3L_20804081_20804550;chr3L_20804630_20805297 97.44 89.47 98.18 98.44 97.37 100.00 95.92 95.92 93.33 97.44 96.97 100.00 100.00 95.00 100.00 97.96 100.00 100.00 94.44 97.56 97.56 94.94 98.75 98.15 97.44 97.30 98.11 97.47 100.00 98.51 93.02 98.44 96.06 98.28 96.23 98.55 100.00 94.44 92.98 99.02 96.20 96.97 92.86 97.22 97.94 95.77 97.44 97.02 96.34 94.44 98.57 89.29 100.00 100.00 95.92 100.00 100.00 94.81 K cassette I_chr3R_19977468_19977530,Myo95E,F_chr3R_19985049_19985112,F_chr3R_19985127_19985197 chr3R - chr3R_19982898_19983112 chr3R_19982898_19982979;chr3R_19983040_19983112 chr3R_19982980_19983039 chr3R_19982566_19982897;chr3R_19983113_19983809 66.67 NA NA 85.71 NA NA 55.56 NA 64.29 NA NA 85.71 NA NA NA NA NA NA NA 66.67 NA 90.00 50.00 NA NA NA 72.73 NA NA NA 72.22 NA 66.67 77.78 NA 50.00 63.64 NA 50.00 61.54 NA 66.67 NA NA NA 71.43 NA NA 85.71 NA 63.64 85.71 NA NA NA NA NA NA K intron_retention I_chr2R_2754447_2755071,Spn4,CG9454 chr2R - chr2R_2764239_2764302 chr2R_2764238_2764239;chr2R_2764302_2764303 chr2R_2764101_2764238;chr2R_2764303_2764627 85.45 88.24 81.82 88.24 90.00 66.67 85.71 77.42 85.00 71.43 90.91 91.18 76.47 86.67 84.21 84.62 75.00 82.61 77.78 88.57 NA 77.27 100.00 70.00 81.82 84.62 91.67 90.91 91.67 85.71 85.19 94.12 94.44 77.78 92.31 92.31 70.59 84.62 82.61 78.95 71.43 80.56 91.67 90.00 86.36 82.61 73.91 95.24 93.94 95.00 85.71 91.67 94.74 93.33 70.83 88.24 80.00 81.82 K intron_retention CG14741 chr3R - chr3R_7899339_7900895 chr3R_7899338_7899339;chr3R_7900895_7900896 chr3R_7899048_7899338;chr3R_7900896_7901144 14.73 15.06 18.33 15.77 7.04 10.77 16.60 23.26 15.44 6.08 7.94 19.94 2.46 15.85 14.60 35.96 22.16 18.18 15.35 14.39 18.59 9.02 14.18 11.66 16.67 9.66 13.43 8.64 18.39 8.21 34.71 13.33 14.72 14.73 12.50 21.01 7.85 11.35 13.57 8.44 13.04 16.54 16.67 12.61 17.33 15.38 7.07 13.28 20.48 10.38 12.21 12.93 22.78 19.15 15.28 18.18 22.09 17.89 N alternative_donor RpS27A chr2L + chr2L_10410169_10410240;chr2L_10410052_10410240 chr2L_10410157_10410240 chr2L_10410241_10410467;chr2L_10409711_10410051 0.06 0.05 0.04 0.10 0.04 0.03 0.01 0.07 0.13 0.17 0.04 0.07 0.07 0.08 0.04 0.08 0.09 0.04 0.08 0.05 0.04 0.06 0.08 0.06 0.08 0.04 0.01 0.36 0.07 0.05 0.19 0.04 0.07 0.05 0.09 0.09 0.05 0.06 0.04 0.07 0.06 0.04 0.07 0.04 0.04 0.09 0.06 0.06 0.03 0.01 0.07 0.06 0.01 0.01 0.04 0.01 0.12 0.06 K intron_retention mRpL20,RI_chr3L_13010445_13010503,RI_chr3L_13010729_13010775 chr3L - chr3L_13010450_13010503 chr3L_13010449_13010450;chr3L_13010503_13010504 chr3L_13010382_13010449;chr3L_13010504_13010570 0.00 2.78 2.78 0.00 0.00 0.00 6.67 0.00 1.47 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 1.30 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 K jcn_only_AD gish chr3R + chr3R_12106734_12107802 chr3R_12106747_12107802 chr3R_12107803_12107810;chr3R_12106723_12106733 86.96 86.96 NA 84.38 NA NA 87.50 96.67 88.37 NA NA 81.08 86.36 NA 80.95 73.33 NA NA 78.57 86.76 NA 81.82 89.80 76.92 95.24 NA 85.71 89.66 90.00 75.00 89.74 95.24 92.31 92.86 90.24 79.07 79.41 NA 95.00 80.85 86.96 91.89 NA 87.27 90.48 84.85 NA 77.50 88.68 85.00 87.88 96.43 77.27 91.30 73.33 85.71 NA 74.29 K intron_retention CG2789 chr2L + chr2L_560306_560369 chr2L_560305_560306;chr2L_560369_560370 chr2L_560097_560305;chr2L_560370_560522 97.77 97.24 97.12 98.86 97.92 97.18 99.68 98.44 97.84 96.09 96.36 98.75 94.96 99.36 98.39 98.44 96.90 94.23 96.97 95.43 95.81 97.56 98.08 97.04 98.83 98.06 99.17 96.71 99.56 96.92 96.01 99.17 98.92 98.25 97.79 99.44 95.24 98.83 98.36 96.73 99.03 97.94 96.90 94.86 95.38 97.77 98.02 97.29 96.77 98.31 95.02 94.83 94.70 98.25 98.59 97.13 97.81 95.77 K intron_retention Top3beta,Rpt4,CG15891 chrX - chrX_6183755_6183817 chrX_6183754_6183755;chrX_6183817_6183818 chrX_6183501_6183754;chrX_6183818_6183958 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 4.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor CG8839,I_chr2R_8229288_8231538 chr2R - chr2R_8227962_8228070 chr2R_8228010_8228070 chr2R_8228071_8228645;chr2R_8227126_8227961 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Rad17,RI_chr3R_10488039_10488120 chr3R - chr3R_10487526_10487583 chr3R_10487525_10487526;chr3R_10487583_10487584 chr3R_10486823_10487525;chr3R_10487584_10488011 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG17233,I_chr3L_20232803_20232962,RI_chr3L_20232898_20232962 chr3L - chr3L_20232648_20232962;chr3L_20232714_20232962;chr3L_20232645_20232962 chr3L_20232711_20232962 chr3L_20232963_20233016;chr3L_20232147_20232644 32.91 50.00 29.03 14.29 44.00 NA 33.33 35.29 25.42 NA NA 17.78 NA NA 35.48 33.33 33.33 22.73 40.91 10.71 36.00 37.14 17.95 21.43 NA NA 25.00 NA 25.00 23.68 28.57 NA 25.00 44.19 33.33 28.57 19.72 62.07 21.43 33.33 12.50 32.08 34.78 34.38 37.50 27.27 NA 30.23 36.59 0.00 38.46 47.06 9.09 NA 48.15 44.74 33.33 32.50 K intron_retention Upf1,I_chrX_11799010_11799076 chrX - chrX_11798981_11799067 chrX_11798980_11798981;chrX_11799067_11799068 chrX_11798910_11798980;chrX_11799068_11799388 62.50 66.67 70.00 85.00 58.33 60.00 60.00 60.71 57.69 60.87 52.00 64.58 63.16 76.19 62.50 68.97 66.67 50.00 55.17 69.23 61.11 76.47 77.08 80.77 88.00 72.41 87.88 86.96 87.50 72.41 NA 53.85 74.29 52.38 56.52 36.36 66.00 66.67 62.79 61.36 53.33 54.35 55.56 75.00 88.89 57.14 78.57 41.94 53.23 62.50 56.10 70.00 57.14 90.91 50.00 61.11 53.33 44.00 K alternative_acceptor KdelR,CG5188 chr2L + chr2L_10427004_10427075 chr2L_10427004_10427052 chr2L_10426867_10427003;chr2L_10427076_10428159 1.31 0.69 0.72 1.60 1.30 1.31 2.09 1.36 1.79 1.23 1.77 1.10 1.93 2.65 1.88 1.60 1.55 2.00 2.16 2.13 1.09 1.27 1.07 1.66 1.22 1.48 3.43 10.00 3.21 0.61 1.92 0.69 1.53 1.95 2.36 0.92 0.99 0.38 1.13 1.06 1.75 1.04 1.03 0.70 1.89 1.84 0.34 3.23 1.83 1.27 0.35 0.00 1.82 0.75 1.23 1.10 1.23 0.00 K alternative_donor TBPH,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19747351_19747879 chr2R_19747351_19747409 chr2R_19747213_19747350;chr2R_19747880_19748038 98.88 98.94 98.53 98.85 100.00 98.41 98.65 98.72 100.00 98.00 97.78 99.21 97.96 98.15 100.00 100.00 97.96 100.00 98.11 97.47 100.00 100.00 97.60 100.00 100.00 98.31 98.95 98.55 98.73 100.00 98.57 98.88 100.00 100.00 98.57 100.00 98.47 98.88 99.28 99.32 100.00 99.29 97.62 98.81 99.21 98.39 97.85 99.08 98.39 100.00 98.13 98.15 96.81 100.00 100.00 99.02 99.21 99.29 K cassette stau,I_chr2R_14010368_14010685 chr2R - chr2R_14010368_14013059 chr2R_14010368_14012198;chr2R_14012433_14013059 chr2R_14012199_14012432 chr2R_14010268_14010367;chr2R_14013060_14013303 100.00 100.00 100.00 100.00 100.00 96.88 97.92 97.92 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.26 100.00 100.00 100.00 100.00 98.28 98.65 98.65 98.92 100.00 100.00 100.00 98.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 98.53 96.97 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention exba,I_chr3R_1423660_1424665,snoRNA:Psi28S-3186,I_chr3R_1424091_1424665,snoRNA:Psi28S-2442b,snoRNA:Psi28S-2442a,RI_chr3R_1425087_1425302,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1423660_1423925 chr3R_1423659_1423660;chr3R_1423925_1423926 chr3R_1423560_1423659;chr3R_1423926_1423966 0.44 0.53 0.00 0.69 0.00 0.44 0.79 0.59 0.40 0.61 0.00 0.59 1.56 0.73 0.35 0.22 0.40 0.00 0.34 0.63 0.00 0.00 0.48 0.53 1.64 0.00 0.87 1.70 0.94 0.50 0.43 0.53 0.41 0.37 0.83 0.28 0.54 0.52 0.27 0.91 0.90 0.59 0.00 0.85 0.30 0.54 0.17 1.08 0.33 0.14 0.90 0.48 0.00 0.00 0.29 0.15 0.28 0.00 K intron_retention unc-13,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_903708_903768 chr4_903707_903708;chr4_903768_903769 chr4_903587_903707;chr4_903769_903779 3.10 4.65 3.77 5.21 9.09 0.00 3.10 5.21 9.82 0.00 23.08 4.00 13.89 6.90 6.35 7.79 4.76 5.26 5.66 4.11 19.35 0.00 2.61 5.00 1.43 3.03 1.44 2.08 0.00 6.56 3.54 2.56 0.00 6.41 0.00 1.04 4.00 4.88 0.00 4.30 0.00 6.06 0.00 0.00 0.00 1.25 0.00 0.00 5.88 3.77 2.50 0.00 0.00 0.00 5.00 0.00 0.00 0.00 K intron_retention SCAP,CG14591 chr2R - chr2R_1915034_1915095 chr2R_1915033_1915034;chr2R_1915095_1915096 chr2R_1914831_1915033;chr2R_1915096_1917364 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention noncoding_4261 chr2L + chr2L_21930695_21930858 chr2L_21930694_21930695;chr2L_21930858_21930859 chr2L_21930327_21930694;chr2L_21930859_21930947 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27784850_27801169 chr3R_27784850_27795477;chr3R_27795508_27798223;chr3R_27798276_27801169 chr3R_27795478_27795507;chr3R_27798224_27798275 chr3R_27784757_27784849;chr3R_27801170_27801219 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette kel,I_chr2L_18134827_18137476,I_chr2L_18135502_18135573 chr2L - chr2L_18134827_18137476 chr2L_18134827_18135573;chr2L_18135976_18137476 chr2L_18135574_18135975 chr2L_18134727_18134826;chr2L_18137477_18137576 100.00 100.00 100.00 97.92 100.00 96.77 97.67 97.62 98.65 100.00 95.65 98.48 96.55 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 96.49 98.36 100.00 96.97 96.43 100.00 100.00 97.62 97.44 100.00 100.00 98.04 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 98.48 100.00 100.00 94.12 96.00 100.00 97.44 100.00 100.00 98.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG33097,I_chr3R_2191538_2191675,I_chr3R_2199103_2199426 chr3R - chr3R_2190877_2191675 chr3R_2191538_2191675 chr3R_2191676_2191775;chr3R_2190726_2190876 2.38 1.92 0.00 1.19 2.33 2.04 6.00 3.28 3.03 3.85 5.13 3.49 2.63 1.92 2.38 5.77 2.70 11.90 2.70 6.32 9.38 2.17 2.63 3.08 2.38 0.00 2.53 4.76 1.52 1.92 1.18 2.94 1.41 3.51 3.45 2.13 5.00 2.08 1.20 2.78 1.54 2.67 3.23 2.38 1.59 1.43 1.92 1.08 2.27 3.08 2.30 3.33 3.03 1.59 2.04 1.54 2.63 1.54 K jcn_only_AA ftz-f1,I_chr3L_18765465_18765553,I_chr3L_18765465_18765559,CEI_chr3L_18765465_18790636,I_chr3L_18790575_18790636 chr3L - chr3L_18756963_18790636;chr3L_18790575_18790636 chr3L_18748974_18790636 chr3L_18790637_18790736 0.83 0.00 0.00 0.00 0.00 8.00 0.00 3.57 0.00 0.00 8.70 0.00 NA 0.00 NA 8.70 0.00 0.00 0.00 0.00 0.00 2.94 4.35 4.00 2.04 0.00 0.00 3.03 0.00 0.00 4.17 NA 0.00 4.26 3.57 0.00 2.11 2.17 1.67 5.00 NA 0.00 4.55 14.81 0.00 0.00 9.09 2.70 2.04 8.00 2.70 14.29 NA NA 2.94 0.00 NA 0.00 K cassette CG8516 chr3R + chr3R_5621584_5621964 chr3R_5621584_5621775;chr3R_5621860_5621964 chr3R_5621776_5621859 chr3R_5621298_5621583;chr3R_5621965_5623259 0.71 0.00 0.00 3.95 0.00 0.00 1.92 0.00 0.00 1.89 0.00 4.29 5.13 2.27 0.00 1.56 2.70 0.00 2.38 0.71 2.22 2.06 1.32 0.00 0.00 0.00 1.35 4.00 3.12 1.52 0.00 0.00 1.09 1.28 0.00 0.00 1.52 0.00 0.00 1.06 0.00 1.08 2.94 0.00 1.47 1.27 0.00 0.79 1.00 2.04 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG13319,RI_chr2R_8812301_8816468 chr2R + chr2R_8811853_8811926 chr2R_8811857_8811926 chr2R_8811927_8812157;chr2R_8811372_8811852 13.16 8.51 14.29 12.00 12.00 13.33 16.13 9.38 12.77 10.42 18.75 6.25 11.11 14.29 13.79 17.65 5.00 13.79 10.53 9.80 23.53 11.63 9.33 11.48 21.88 20.00 16.88 13.64 17.65 9.68 13.16 12.50 24.14 17.07 10.00 9.68 8.94 10.14 7.41 15.62 15.38 15.25 12.50 15.38 15.56 10.00 13.16 16.00 16.28 7.69 17.65 15.38 15.71 10.34 3.12 6.94 7.09 19.67 K jcn_only_AA CG7852,Cct1,Cct2 chr3L + chr3L_1537243_1537523 chr3L_1537243_1537506 chr3L_1537183_1537242;chr3L_1537524_1537989 1.39 0.00 0.00 6.06 4.35 NA 0.00 2.56 0.00 3.03 NA 3.03 0.00 0.00 3.85 4.88 2.94 0.00 3.23 4.55 7.69 3.23 0.00 0.00 8.00 4.35 0.00 1.39 2.50 0.00 0.00 NA 0.00 0.00 0.00 2.78 4.55 0.00 4.76 0.00 7.14 1.82 NA 0.00 0.00 3.03 NA 0.00 0.00 0.00 1.92 2.38 0.00 NA 2.78 0.00 3.33 0.00 K intron_retention Dyrk3,I_chr4_1231226_1233305,I_chr4_1233845_1234170 chr4 - chr4_1230171_1230230 chr4_1230170_1230171;chr4_1230230_1230231 chr4_1229562_1230170;chr4_1230231_1230567 0.00 0.00 0.00 11.43 NA 0.00 0.00 0.00 0.00 0.00 NA 5.88 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 NA 10.53 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 8.33 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K cassette CkIIalpha,I_chr3L_23092989_23093344,RI_chr3L_23094196_23095221 chr3L + chr3L_23092824_23095221 chr3L_23092824_23093319;chr3L_23093458_23095221 chr3L_23093320_23093457 chr3L_23092680_23092823;chr3L_23095222_23095321 42.31 37.14 50.00 34.04 22.58 36.00 28.12 38.36 31.82 29.41 42.31 37.50 22.50 54.05 38.71 47.76 34.21 72.22 40.54 42.86 53.33 59.26 57.78 28.21 25.93 37.93 28.57 44.00 62.50 61.11 43.33 63.16 84.21 37.10 58.33 65.38 31.25 45.45 42.11 61.36 52.94 40.00 53.85 33.33 55.56 65.38 35.71 80.00 38.10 34.21 45.95 34.15 55.00 58.33 45.71 34.38 29.17 78.12 K intron_retention CG15814,I_chrX_17743744_17743940 chrX - chrX_17742795_17742851 chrX_17742794_17742795;chrX_17742851_17742852 chrX_17742176_17742794;chrX_17742852_17743087 0.00 0.00 0.00 2.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 3.10 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 K jcn_only_AD Chc,RI_chrX_15728405_15729273,I_chrX_15728405_15729401,I_chrX_15728946_15729357 chrX - chrX_15728405_15729260;chrX_15728405_15729370;chrX_15728405_15729476;chrX_15728405_15729319 chrX_15728405_15729357 chrX_15728305_15728404;chrX_15729477_15729501 88.45 89.17 87.77 83.27 86.21 88.52 88.24 90.48 87.76 85.71 92.13 90.06 91.92 87.03 89.02 89.29 88.65 86.60 85.65 88.20 88.19 91.71 87.95 92.65 92.56 83.78 91.04 89.47 77.92 91.82 89.18 88.37 94.59 88.38 88.72 86.36 85.71 81.82 95.83 87.30 97.30 88.07 90.91 86.76 NA 93.90 92.94 88.07 89.66 84.09 86.88 90.91 83.78 71.11 88.14 91.78 96.77 89.36 K intron_retention Nmda1,R_chr2R_8766216_8766562,I_chr2R_8766652_8766956,I_chr2R_8766728_8767623 chr2R - chr2R_8765520_8765577 chr2R_8765519_8765520;chr2R_8765577_8765578 chr2R_8764596_8765519;chr2R_8765578_8765826 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 1.08 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 K intron_retention I_chr3R_17094214_17094492,AP-2sigma,I_chr3R_17099005_17099062 chr3R - chr3R_17095617_17095672 chr3R_17095616_17095617;chr3R_17095672_17095673 chr3R_17095467_17095616;chr3R_17095673_17095757 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 2.99 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention MRP,I_chr2L_12727117_12729243,F_chr2L_12727117_12736035 chr2L + chr2L_12727117_12736592 chr2L_12727116_12727117;chr2L_12736592_12736593 chr2L_12727017_12727116;chr2L_12736593_12736813 66.67 NA NA 88.89 NA NA 60.00 83.33 70.00 NA NA 50.00 NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA 53.85 NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA K alternative_donor CG4266,I_chr2R_17052549_17053657 chr2R - chr2R_17054340_17054403 chr2R_17054340_17054394 chr2R_17054235_17054339;chr2R_17054404_17054436 92.59 92.31 93.75 96.15 93.33 91.67 100.00 90.00 97.30 94.44 100.00 93.94 92.86 90.00 91.67 95.65 78.95 90.48 85.71 92.86 90.00 82.50 93.94 88.46 91.67 82.35 95.83 93.33 82.14 92.59 96.77 93.33 91.67 92.59 88.89 96.00 88.46 82.35 95.65 93.75 80.00 90.62 100.00 95.00 78.12 76.00 91.67 89.19 90.00 96.67 96.55 83.33 91.67 90.91 95.00 93.33 100.00 93.33 K cassette Dbp80,E_chr3LHet_2513829_2513928 chr3LHet + chr3LHet_2504074_2543665 chr3LHet_2504074_2513928;chr3LHet_2514039_2543665 chr3LHet_2513929_2514038 chr3LHet_2503938_2504073;chr3LHet_2543666_2543794 4.22 0.00 NA 1.96 NA 4.00 5.88 3.39 0.00 NA NA 2.33 0.00 6.67 3.12 3.03 0.00 0.00 0.00 14.29 NA 5.56 NA NA NA NA NA NA NA NA 11.76 NA NA 5.71 NA NA NA NA NA 6.67 NA 4.44 NA 7.14 NA 6.67 9.52 NA 2.94 NA 8.33 NA NA NA 2.94 NA 7.14 5.00 K intron_retention Sep5 chr2R - chr2R_3849288_3849347 chr2R_3849287_3849288;chr2R_3849347_3849348 chr2R_3847638_3849287;chr2R_3849348_3849378 66.67 NA NA 80.00 NA NA NA 90.00 61.11 NA NA NA NA NA NA 52.63 NA NA 50.00 41.67 NA NA NA NA NA NA NA NA NA NA NA NA 87.50 72.73 NA 81.82 NA NA NA 63.64 NA 53.33 NA NA NA NA NA 70.00 66.67 NA NA NA NA NA 50.00 NA NA 66.67 K jcn_only_AD CG15134 chr2L + chr2L_16904611_16905298;chr2L_16904662_16905298 chr2L_16904713_16905298 chr2L_16905299_16905389;chr2L_16904460_16904610 90.24 92.31 92.50 86.30 84.38 84.31 96.72 90.91 96.20 65.38 86.67 83.33 97.44 94.44 98.08 95.08 88.37 89.74 98.59 94.95 91.67 83.05 86.15 97.50 84.44 95.24 82.35 92.00 89.19 90.00 95.16 NA 60.47 91.95 87.10 90.00 100.00 91.30 91.89 97.14 NA 94.81 91.89 78.12 NA 90.00 NA 85.29 90.48 NA 88.57 89.66 NA NA 83.02 NA NA 75.00 N intron_retention Inos,I_chr2R_3344353_3345211,noncoding_4874 chr2R - chr2R_3344353_3346212 chr2R_3344352_3344353;chr2R_3346212_3346213 chr2R_3344253_3344352;chr2R_3346213_3346215 98.90 98.50 100.00 99.22 100.00 100.00 98.90 100.00 98.62 100.00 98.09 97.92 100.00 100.00 98.53 98.87 100.00 98.19 100.00 98.81 98.27 92.77 98.59 97.71 100.00 100.00 100.00 98.19 96.81 97.43 99.21 98.48 92.48 99.16 100.00 100.00 100.00 98.42 98.36 98.27 100.00 99.12 97.88 100.00 98.49 98.29 100.00 100.00 98.82 100.00 98.51 100.00 100.00 98.29 98.87 98.77 100.00 100.00 K intron_retention Grip84 chrX - chrX_19458726_19458805 chrX_19458725_19458726;chrX_19458805_19458806 chrX_19458219_19458725;chrX_19458806_19459340 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 NA 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette cora,I_chr2R_15125277_15130573,I_chr2R_15125940_15130208,I_chr2R_15129291_15129988 chr2R + chr2R_15125940_15130208 chr2R_15125940_15128720;chr2R_15129291_15129678;chr2R_15129901_15129988;chr2R_15130091_15130208 chr2R_15128721_15129290;chr2R_15129679_15129900;chr2R_15129989_15130090 chr2R_15125887_15125939;chr2R_15130209_15130308 100.00 100.00 100.00 99.81 100.00 100.00 100.00 100.00 100.00 99.66 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.81 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention E(var)3-9 chr3R - chr3R_4817344_4817401 chr3R_4817343_4817344;chr3R_4817401_4817402 chr3R_4816499_4817343;chr3R_4817402_4817449 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 5.56 NA NA 6.67 11.11 NA 0.00 0.00 NA NA 0.00 18.75 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 NA NA K intron_retention AT25722,CG3376 chr2R + chr2R_20151869_20152108 chr2R_20151868_20151869;chr2R_20152108_20152109 chr2R_20151683_20151868;chr2R_20152109_20152281 74.03 79.46 76.47 98.61 79.03 66.67 80.13 74.76 76.83 73.02 91.67 60.28 84.16 79.26 81.60 77.97 80.60 68.13 83.52 79.00 79.01 43.06 79.26 70.00 81.97 72.97 75.93 68.18 50.00 52.63 82.76 78.00 67.31 76.84 70.77 65.43 73.33 73.68 71.93 87.40 73.02 75.98 84.62 63.25 55.88 75.36 67.03 66.28 71.55 74.19 74.03 72.60 61.08 65.96 81.36 73.12 70.50 62.33 K alternative_donor RpL35,I_chrX_5566913_5567030,I_chrX_5567168_5567220 chrX + chrX_5566556_5567030;chrX_5566909_5567030 chrX_5566913_5567030 chrX_5567031_5567130;chrX_5566554_5566555 0.10 0.12 0.10 0.06 0.00 0.12 0.26 0.17 0.14 0.18 0.12 0.16 0.09 0.10 0.09 0.09 0.23 0.10 0.08 0.08 0.11 0.06 0.23 0.11 0.19 0.09 0.38 0.48 0.39 0.00 0.05 0.10 0.09 0.12 0.15 0.14 0.00 0.00 0.00 0.06 0.15 0.05 0.12 0.08 0.00 0.10 0.10 0.13 0.23 0.10 0.13 0.28 0.08 0.12 0.07 0.08 0.07 0.08 K jcn_only_AD CG1021,I_chr3R_2217711_2231099,I_chr3R_2217711_2231390,RI_chr3R_2217711_2231463,I_chr3R_2218465_2231390,RI_chr3R_2218465_2231463,I_chr3R_2218682_2231463,I_chr3R_2219634_2231390,I_chr3R_2231383_2231463 chr3R - chr3R_2219634_2231463 chr3R_2219634_2231099 chr3R_2219534_2219633;chr3R_2231464_2231490 89.60 NA 97.06 100.00 NA 96.67 91.89 75.61 90.48 84.91 NA 87.76 90.91 85.00 85.29 81.82 92.31 NA 88.89 96.25 90.91 94.51 89.47 92.73 97.62 83.87 89.74 81.25 90.79 90.00 72.00 86.67 83.08 86.05 79.59 96.00 92.00 85.00 97.67 91.35 87.50 88.41 NA 91.07 92.73 82.14 87.76 89.38 87.72 90.38 82.98 100.00 85.00 100.00 84.44 82.93 90.77 92.50 K alternative_donor nes chr3L - chr3L_19253331_19253632;chr3L_19253331_19253636;chr3L_19253331_19253609;chr3L_19253331_19253676;chr3L_19253331_19253745;chr3L_19253331_19253764 chr3L_19253331_19253648 chr3L_19253215_19253330;chr3L_19253765_19253779 16.67 20.00 16.67 15.38 18.18 22.22 21.05 15.79 12.50 28.57 0.00 12.50 25.00 18.18 16.67 14.29 0.00 0.00 18.18 12.50 33.33 50.00 14.29 16.67 18.18 10.00 20.00 20.00 10.00 0.00 18.18 0.00 12.50 10.53 14.29 16.67 42.86 33.33 20.00 14.29 14.29 9.52 0.00 0.00 25.00 15.38 22.22 7.14 9.09 25.00 16.67 20.00 0.00 0.00 20.00 25.00 40.00 0.00 K intron_retention l(1)G0196,I_chrX_21900456_21904601 chrX + chrX_21904142_21904471 chrX_21904141_21904142;chrX_21904471_21904472 chrX_21904031_21904141;chrX_21904472_21904538 90.67 89.23 88.89 87.30 75.00 77.55 95.18 88.66 91.04 93.18 90.00 89.41 94.59 90.00 94.12 90.67 90.91 88.64 91.49 93.43 85.71 98.59 88.16 88.00 93.48 97.06 91.86 95.12 90.00 90.00 92.31 95.92 97.37 91.49 92.45 96.88 88.16 97.56 93.18 93.33 92.00 90.62 88.64 91.09 88.31 88.70 72.84 94.74 88.98 82.93 87.50 97.30 85.42 91.67 93.10 87.72 85.71 85.00 K alternative_acceptor eIF5,I_chrX_15882955_15883078,RI_chrX_15883163_15883424,I_chrX_15883297_15883424,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15883360_15883424;chrX_15883163_15883424;chrX_15883302_15883424 chrX_15883143_15883424 chrX_15883425_15883509;chrX_15883079_15883142 4.65 7.69 3.57 2.38 5.88 8.70 5.45 5.97 1.64 16.67 7.14 4.35 16.67 2.70 6.67 4.94 3.70 4.76 2.33 8.89 11.76 11.11 2.50 3.33 NA 12.50 2.63 4.35 5.26 0.00 10.45 5.88 2.70 1.43 0.00 0.00 5.88 0.00 0.00 6.98 3.45 8.33 5.88 2.94 0.00 0.00 3.70 12.12 4.55 4.00 3.03 5.56 19.23 5.88 11.36 0.00 6.25 2.27 K alternative_donor CG11266,RI_chr2L_7033019_7034764,I_chr2L_7034274_7035406,RI_chr2L_7034911_7035074,I_chr2L_7051093_7051366 chr2L + chr2L_7034911_7035406 chr2L_7034913_7035406 chr2L_7035407_7035506;chr2L_7034869_7034910 66.67 NA NA NA NA NA NA 60.00 70.00 NA NA 70.00 NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 76.92 NA NA NA NA 33.33 50.00 NA 70.00 NA NA NA NA NA NA 63.64 NA NA NA NA NA NA NA NA NA K intron_retention ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13413919_13414338 chr2R_13413918_13413919;chr2R_13414338_13414339 chr2R_13412209_13413918;chr2R_13414339_13414406 31.82 31.82 36.36 26.92 25.00 29.17 15.00 29.03 32.08 NA 26.32 36.96 26.09 33.33 31.82 20.69 10.53 25.00 22.73 40.48 NA 36.36 46.67 30.43 26.32 17.65 35.29 46.67 43.75 42.42 22.22 23.53 24.32 23.33 50.00 25.93 47.37 40.00 41.18 31.82 27.78 37.84 41.18 38.24 25.00 24.00 31.25 50.00 41.67 26.32 50.00 37.50 23.81 46.15 33.33 35.29 54.55 40.00 K intron_retention I_chr3R_23771063_23772599,CG4951,RI_chr3R_23778808_23778861 chr3R - chr3R_23778137_23778196 chr3R_23778136_23778137;chr3R_23778196_23778197 chr3R_23777773_23778136;chr3R_23778197_23778404 9.07 10.00 6.12 26.67 7.41 10.81 16.98 9.52 8.45 NA 13.79 4.29 12.00 3.45 4.26 10.00 0.00 14.04 7.14 4.59 14.29 43.75 16.67 19.05 31.58 33.33 22.73 6.67 19.51 12.50 5.88 6.12 21.95 3.57 15.38 40.00 23.08 3.85 8.62 9.86 36.36 5.56 0.00 7.69 4.55 8.00 0.00 8.22 5.13 14.29 3.12 17.65 6.67 2.70 10.26 6.06 13.16 8.22 K jcn_only_AA CG9740,RI_chr3R_5083859_5083977,I_chr3R_5083907_5083977 chr3R - chr3R_5083859_5083977;chr3R_5083911_5083977 chr3R_5083907_5083977 chr3R_5083978_5084077;chr3R_5083807_5083858 0.00 0.00 0.00 2.13 4.55 3.33 4.65 0.00 0.00 2.86 0.00 0.00 0.00 2.27 0.00 1.89 0.00 3.23 0.00 1.14 2.17 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 3.12 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 2.50 0.00 0.00 0.00 0.00 1.64 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG9967 chr2L - chr2L_2310871_2330655 chr2L_2310871_2323350;chr2L_2323450_2330655 chr2L_2323351_2323449 chr2L_2310662_2310870;chr2L_2330656_2330742 85.71 NA 85.71 100.00 NA NA NA 90.00 85.71 NA NA NA NA NA 85.71 85.71 NA NA NA 100.00 NA NA 88.89 85.71 71.43 NA 75.00 NA NA NA NA NA NA NA NA NA 88.89 85.71 NA 77.78 NA 78.57 NA 62.50 NA 80.00 87.50 83.33 100.00 88.89 87.50 NA 85.71 NA 62.50 100.00 87.50 66.67 N multi_cassette Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16107821_16110644 chr3L_16107821_16107893;chr3L_16107944_16108768;chr3L_16108931_16110644 chr3L_16107894_16107943;chr3L_16108769_16108930 chr3L_16107721_16107820;chr3L_16110645_16111208 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 73.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG42533,F_chr2L_7476906_7476978 chr2L - chr2L_7473890_7473947 chr2L_7473889_7473890;chr2L_7473947_7473948 chr2L_7473771_7473889;chr2L_7473948_7474236 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG1074,I_chr3R_261173_261244,RI_chr3R_265878_265942 chr3R + chr3R_261173_261244 chr3R_261173_261228 chr3R_261073_261172;chr3R_261245_261344 100.00 100.00 90.91 100.00 100.00 NA 92.31 93.75 100.00 90.91 100.00 100.00 NA 100.00 93.75 100.00 100.00 100.00 92.86 96.00 NA 100.00 100.00 92.31 100.00 90.00 100.00 100.00 88.89 100.00 90.91 92.86 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 94.44 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 K alternative_donor Cht2,I_chr3L_1754361_1754605,I_chr3L_1754361_1754860 chr3L - chr3L_1754361_1754860;chr3L_1754361_1754605 chr3L_1754361_1755586 chr3L_1754261_1754360;chr3L_1755587_1755934 75.00 57.14 62.50 89.47 88.89 70.00 33.33 72.73 80.95 91.67 90.00 76.47 80.00 70.00 81.25 44.44 83.33 90.00 80.00 64.29 60.00 NA NA NA NA 81.82 NA NA 50.00 NA 50.00 NA NA 71.43 NA NA NA NA 75.00 57.14 NA 75.00 60.00 NA 85.71 NA 50.00 87.50 77.27 NA 60.00 NA NA NA 70.00 NA 87.50 NA K alternative_acceptor Zasp52,I_chr2R_11661472_11663280,I_chr2R_11690993_11701987 chr2R - chr2R_11662263_11664682 chr2R_11663013_11664682 chr2R_11664683_11664791;chr2R_11661933_11662262 99.22 98.26 100.00 98.50 100.00 98.84 99.25 99.25 99.55 97.37 98.63 100.00 100.00 98.63 100.00 100.00 100.00 97.18 100.00 99.22 100.00 85.42 98.09 99.37 99.08 98.33 97.28 96.81 99.22 99.40 98.97 100.00 99.41 99.29 100.00 100.00 98.90 99.12 98.56 98.73 98.80 99.49 98.36 99.39 97.76 99.27 100.00 98.16 100.00 96.33 99.37 100.00 100.00 98.91 98.92 98.06 100.00 98.10 K intron_retention dpr3 chr2L - chr2L_2059984_2061809 chr2L_2059983_2059984;chr2L_2061809_2061810 chr2L_2058819_2059983;chr2L_2061810_2061907 2.13 0.00 0.00 22.92 0.00 8.11 7.14 16.13 0.00 NA 0.00 5.06 0.00 0.00 4.17 0.00 0.00 NA 0.00 6.25 0.00 11.29 1.49 2.94 2.99 2.33 12.73 17.86 0.00 0.00 0.00 12.00 12.00 0.00 5.56 19.57 2.13 0.00 0.00 2.13 5.71 0.00 0.00 4.88 4.44 5.88 0.00 17.65 6.35 4.65 3.85 0.00 2.38 0.00 0.00 0.00 0.00 0.00 K alternative_donor Not1,I_chr2R_5463624_5463682 chr2R - chr2R_5457662_5457724 chr2R_5457662_5457718 chr2R_5456490_5457661;chr2R_5457725_5460288 61.18 57.14 71.26 51.59 55.29 61.04 67.13 54.14 59.25 61.54 60.24 59.13 62.92 62.50 64.65 66.93 58.54 58.89 62.96 57.73 57.14 61.78 62.71 58.29 64.23 66.67 59.15 59.29 65.26 59.46 62.77 58.00 62.00 68.24 66.00 52.63 61.21 70.21 66.67 63.16 58.14 58.02 57.69 57.32 60.42 62.69 62.63 56.25 66.29 61.22 59.64 60.18 69.23 60.29 63.89 63.64 61.18 51.28 N cassette bur,I_chr2L_21177679_21177901,I_chr2L_21177679_21178250,I_chr2L_21177960_21179329 chr2L - chr2L_21177510_21179329 chr2L_21177510_21177570;chr2L_21177679_21179329 chr2L_21177571_21177678 chr2L_21177205_21177509;chr2L_21179330_21179429 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA kat-60L1,I_chr3R_1609253_1609777 chr3R + chr3R_1611104_1611163 chr3R_1611104_1611151 chr3R_1610912_1611103;chr3R_1611164_1611351 55.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 55.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083637_8089393 chr2L_8083637_8089184 chr2L_8083592_8083636;chr2L_8089394_8089493 81.69 72.73 85.71 70.00 NA 60.00 88.10 90.91 89.13 90.00 87.50 82.14 79.17 78.95 77.78 87.04 100.00 66.67 93.75 80.95 71.43 91.67 81.25 71.43 91.67 92.31 76.92 100.00 90.91 70.00 69.23 60.00 75.00 92.00 88.89 92.31 100.00 80.00 80.00 72.00 93.33 85.19 85.71 81.25 55.56 64.71 83.33 94.44 88.57 100.00 75.00 90.00 NA NA 77.78 71.43 57.14 77.78 K intron_retention Spec2,noncoding_14812,CG2911 chr3R - chr3R_1448411_1449496 chr3R_1448410_1448411;chr3R_1449496_1449497 chr3R_1447834_1448410;chr3R_1449497_1449802 5.05 NA NA NA NA NA NA 5.88 0.00 NA NA NA NA NA NA 9.09 NA NA NA 7.14 NA NA 4.35 NA NA NA NA NA 3.23 NA NA NA 0.00 5.56 NA NA NA NA NA 17.39 5.88 22.22 NA NA 13.04 4.55 NA 0.00 NA NA 0.00 NA NA NA 0.00 5.56 NA 3.23 K jcn_only_AA Acon,I_chr2L_21168805_21168878,I_chr2L_21168805_21170166 chr2L + chr2L_21168805_21170190;chr2L_21168805_21168878 chr2L_21168805_21170166 chr2L_21168705_21168804;chr2L_21170191_21170266 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.37 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.93 0.00 0.31 0.00 0.00 0.00 0.69 0.00 0.00 0.50 0.00 0.00 0.35 0.51 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.79 0.00 0.00 K jcn_only_AD CG1965,I_chr3R_2902064_2902611 chr3R + chr3R_2893812_2894429 chr3R_2893817_2894429 chr3R_2894430_2894670;chr3R_2893510_2893811 21.88 NA NA 6.98 NA NA 21.88 7.69 17.50 NA 8.33 7.14 NA 23.81 14.29 23.08 NA NA 26.92 22.86 9.52 NA 30.00 NA NA 0.00 30.43 NA NA NA 72.00 NA 27.27 11.76 NA NA NA 9.52 NA 21.88 NA 21.88 NA NA NA NA NA NA 21.62 NA NA NA NA NA 44.83 NA NA NA K jcn_only_AA CG3731,E_chr3R_10717341_10717506 chr3R + chr3R_10716149_10716417 chr3R_10716149_10716391 chr3R_10716056_10716148;chr3R_10716418_10716624 0.00 0.20 0.00 0.00 0.00 0.32 0.18 0.17 0.00 0.00 0.33 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.30 0.55 0.00 0.20 0.00 0.25 0.25 0.24 0.00 0.21 0.00 0.00 0.26 0.14 0.18 0.16 0.00 0.35 0.00 0.00 0.19 0.23 0.63 0.00 0.00 0.15 0.00 0.00 0.69 0.00 0.25 0.22 0.00 0.00 0.26 K jcn_only_AA l(2)03709,I_chr2R_14707617_14707700,I_chr2R_14708048_14708095 chr2R + chr2R_14708048_14708109 chr2R_14708048_14708095 chr2R_14707979_14708047;chr2R_14708110_14708178 0.00 0.14 0.35 0.00 0.21 0.00 0.00 0.00 0.10 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.17 0.00 0.10 0.00 0.10 0.13 0.17 0.00 0.12 0.00 0.00 0.00 0.10 0.00 0.09 0.09 0.00 0.00 0.26 0.00 0.00 0.10 0.00 0.14 0.00 0.12 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10260 chrX + chrX_2520959_2521895 chrX_2520958_2520959;chrX_2521895_2521896 chrX_2519897_2520958;chrX_2521896_2522397 5.33 5.63 6.25 7.69 3.51 6.45 6.56 6.85 5.60 4.17 15.91 5.61 3.92 3.51 3.03 6.25 10.26 6.67 3.77 5.61 12.77 12.12 4.88 4.59 5.63 0.00 4.04 10.94 4.08 6.38 8.33 5.13 5.71 7.14 0.00 2.27 3.05 5.00 4.69 4.73 6.12 7.63 0.00 5.33 0.00 7.79 5.08 4.03 8.33 4.17 6.56 0.00 0.00 6.25 8.57 4.17 0.00 3.28 K jcn_only_AD Cyp1,RI_chrX_16212641_16213159,RI_chrX_16212641_16213308,I_chrX_16212641_16213680,I_chrX_16212641_16213960 chrX - chrX_16212641_16213960;chrX_16212641_16213308 chrX_16212641_16214111 chrX_16212541_16212640;chrX_16214112_16214235 99.94 100.00 99.92 99.92 100.00 99.90 100.00 100.00 100.00 99.90 100.00 99.96 100.00 99.76 99.92 100.00 99.88 99.89 100.00 99.93 100.00 100.00 99.88 99.97 99.92 99.91 99.94 100.00 99.71 100.00 99.89 99.93 99.83 100.00 99.88 100.00 99.92 99.87 99.96 99.85 99.86 99.94 99.90 99.86 99.95 99.94 99.91 99.90 99.96 99.95 99.82 99.94 99.95 99.96 100.00 99.80 100.00 99.89 K alternative_acceptor CG33087,EI_chr2R_4062337_4074409 chr2R + chr2R_4112633_4112767 chr2R_4112633_4112755 chr2R_4112506_4112632;chr2R_4112768_4113243 1.27 0.00 1.27 0.92 0.00 2.70 1.08 0.76 1.93 0.00 1.37 0.72 2.08 3.03 1.28 1.04 1.23 1.15 3.16 0.90 1.32 0.00 0.00 1.32 2.13 1.28 1.98 2.56 1.41 1.79 1.03 1.11 1.95 1.48 1.59 1.15 0.69 0.00 1.45 0.70 0.00 0.00 1.49 1.31 0.81 1.41 0.00 1.48 1.45 1.45 1.18 2.44 0.00 0.00 0.93 1.19 2.44 1.64 K intron_retention Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5004357_5004682 chr2R_5004356_5004357;chr2R_5004682_5004683 chr2R_5004308_5004356;chr2R_5004683_5005357 4.76 5.56 6.25 14.55 0.00 8.33 6.00 14.58 6.02 4.55 11.76 4.65 0.00 12.50 0.00 4.17 0.00 0.00 2.63 11.32 0.00 15.38 4.26 0.00 0.00 3.03 10.00 25.00 10.53 3.85 2.56 6.25 11.11 7.55 4.00 19.05 2.63 0.00 13.04 5.56 14.29 6.06 0.00 3.23 NA 2.70 NA 0.00 3.51 9.68 3.92 2.94 0.00 5.88 10.53 6.67 4.76 9.09 K intron_retention CG18249 chr3R + chr3R_4047582_4047641 chr3R_4047581_4047582;chr3R_4047641_4047642 chr3R_4046021_4047581;chr3R_4047642_4047889 75.00 72.73 69.57 86.67 80.00 69.57 80.56 81.08 73.13 81.25 81.82 75.00 63.16 78.26 80.00 76.47 84.00 63.33 77.42 66.67 77.27 44.44 80.56 70.97 90.91 80.95 72.41 90.91 80.00 64.29 82.14 71.43 75.00 69.23 81.82 92.86 61.76 63.16 84.62 64.71 100.00 67.31 80.00 62.96 63.64 78.79 66.67 80.00 81.36 73.17 69.57 77.78 70.83 74.07 81.58 70.27 72.15 66.67 K intron_retention dgt1,CG7824 chr3R - chr3R_25682076_25682132 chr3R_25682075_25682076;chr3R_25682132_25682133 chr3R_25681675_25682075;chr3R_25682133_25682296 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.71 0.00 0.00 0.00 0.00 8.05 12.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3R_16141663_16144698,CG5077,I_chr3R_16147605_16147670 chr3R + chr3R_16148865_16148936 chr3R_16148864_16148865;chr3R_16148936_16148937 chr3R_16147671_16148864;chr3R_16148937_16149283 0.17 0.42 0.42 0.64 0.42 0.00 0.00 0.73 0.17 0.00 0.43 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.40 0.32 0.31 0.53 0.34 0.00 1.38 0.33 0.00 0.40 0.38 0.00 0.51 0.00 0.90 0.82 0.27 0.00 0.00 0.00 0.00 0.17 0.00 0.22 0.50 0.00 0.00 0.00 0.59 0.16 0.39 0.00 0.00 0.00 0.30 0.49 0.20 0.00 K jcn_only_AD lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6394546_6419543,RI_chr2R_6403557_6403850,I_chr2R_6403557_6406705,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6403557_6419543 chr2R_6403557_6403850 chr2R_6403457_6403556;chr2R_6419544_6419624 1.26 0.00 0.00 3.45 0.00 1.40 0.98 1.56 1.38 5.97 0.00 0.80 0.00 0.83 0.61 2.05 0.93 0.79 1.92 0.65 1.14 8.09 0.87 1.75 0.80 1.47 2.07 6.94 2.69 3.80 1.01 1.09 2.66 0.80 2.54 0.48 1.70 1.60 1.97 1.26 3.42 2.01 0.00 0.69 0.68 1.99 0.00 1.75 0.60 0.00 1.63 1.30 0.76 1.59 1.16 0.00 2.00 1.69 K alternative_acceptor CG8388 chr2R - chr2R_11897651_11897713 chr2R_11897660_11897713 chr2R_11897714_11898660;chr2R_11897278_11897650 87.50 NA NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA 87.50 NA NA NA NA NA NA NA 87.50 NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA 87.50 87.50 NA NA NA NA NA NA 87.50 NA K intron_retention Hsc70-5 chr2R - chr2R_10140794_10140856 chr2R_10140793_10140794;chr2R_10140856_10140857 chr2R_10140098_10140793;chr2R_10140857_10140997 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.41 0.00 0.00 0.00 0.00 1.56 0.00 1.55 2.64 0.95 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.28 2.08 0.00 0.00 0.34 0.70 0.52 0.28 0.00 0.43 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.35 0.00 K alternative_acceptor Pi4KIIalpha chr3R - chr3R_1389068_1389263 chr3R_1389095_1389263 chr3R_1389264_1389309;chr3R_1388687_1389067 21.74 16.67 13.33 19.05 30.77 14.29 32.14 28.57 20.00 40.00 21.74 17.14 21.74 17.65 15.38 22.73 21.05 19.05 10.53 25.00 13.64 25.00 29.27 25.00 13.04 33.33 9.09 20.00 26.09 40.00 20.00 NA 40.00 17.65 30.00 56.25 28.95 24.00 17.50 24.24 NA 25.00 25.00 29.41 25.00 23.53 10.00 50.00 20.00 30.56 22.22 16.67 7.41 15.00 18.18 19.05 10.53 31.25 K cassette Fis1,I_chr2R_1491917_1492087,I_chr2R_1492154_1492214 chr2R - chr2R_1492022_1492214 chr2R_1492022_1492087;chr2R_1492156_1492214 chr2R_1492088_1492155 chr2R_1491982_1492021;chr2R_1492215_1492311 93.02 94.74 89.39 90.62 90.00 95.35 97.06 92.20 93.90 95.00 86.84 90.07 94.05 96.72 97.78 89.17 84.62 91.67 92.55 92.55 94.12 100.00 93.51 94.37 97.30 87.88 89.09 90.48 85.71 90.48 89.66 93.02 100.00 95.45 94.44 84.62 86.96 97.78 92.73 98.25 100.00 95.97 93.44 95.59 91.67 98.84 95.40 100.00 92.86 93.85 92.11 92.00 91.38 93.90 91.67 89.47 91.74 98.00 K intron_retention CG32138 chr3L + chr3L_14060644_14060711 chr3L_14060643_14060644;chr3L_14060711_14060712 chr3L_14060430_14060643;chr3L_14060712_14061004 0.00 0.00 0.85 0.00 0.00 0.82 0.33 0.80 1.28 0.00 0.00 0.46 0.78 0.41 0.00 1.26 0.00 0.00 1.16 0.63 0.00 0.00 0.00 0.86 0.00 0.00 0.63 3.68 0.70 0.00 0.00 0.00 0.31 0.51 0.00 0.40 0.00 0.00 0.00 0.44 0.00 0.62 0.95 0.66 0.00 0.00 0.00 0.50 0.86 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.57 K jcn_only_AA Exp6,RI_chrX_365966_366158,I_chrX_369347_369797 chrX - chrX_365945_366158 chrX_365966_366158 chrX_366159_366258;chrX_365866_365944 0.00 3.85 NA 4.44 0.00 NA 0.00 0.00 0.00 NA NA 6.12 0.00 0.00 0.00 0.00 0.00 4.55 4.00 0.00 NA 4.76 0.00 0.00 0.00 3.85 2.50 NA 4.35 0.00 0.00 5.00 4.35 2.27 0.00 0.00 3.57 0.00 2.08 3.12 3.85 3.12 4.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 3.45 0.00 0.00 2.33 3.12 5.13 0.00 0.00 N jcn_only_AA growl chr3R + chr3R_229003_230190 chr3R_229003_229955 chr3R_228731_229002;chr3R_230191_230361 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ercc1 chr2R + chr2R_10741061_10741118 chr2R_10741060_10741061;chr2R_10741118_10741119 chr2R_10740417_10741060;chr2R_10741119_10741456 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 3.12 0.00 NA 12.50 NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA 0.00 NA K jcn_only_AA CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516330_21517792;chr3L_21516330_21517073 chr3L_21516330_21517821 chr3L_21516311_21516329 95.00 NA NA NA NA NA NA 95.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Mi-2,Su(Tpl) chr3L - chr3L_19890360_19890417 chr3L_19890359_19890360;chr3L_19890417_19890418 chr3L_19890180_19890359;chr3L_19890418_19890485 6.56 6.94 8.18 12.58 10.87 6.67 10.26 10.55 6.00 9.62 6.56 8.38 6.80 6.06 7.23 5.95 6.98 6.94 9.09 5.05 4.41 10.96 10.23 6.35 11.76 12.99 9.01 10.00 15.00 5.38 4.55 0.00 4.27 6.47 7.41 6.49 2.56 7.02 4.82 4.26 5.13 6.85 7.14 2.27 0.00 3.64 2.70 9.09 8.65 4.00 5.88 4.55 0.00 0.00 7.14 0.00 0.00 1.61 K intron_retention Pk61C,CE_chr3L_129889_141769,I_chr3L_133962_134014 chr3L + chr3L_134082_135457 chr3L_134081_134082;chr3L_135457_135458 chr3L_134028_134081;chr3L_135458_135842 58.82 NA NA 41.67 NA NA 75.00 58.82 46.67 NA NA NA 63.64 NA NA NA NA NA 63.64 15.15 NA NA 41.67 NA NA NA NA NA NA NA NA NA NA 70.59 NA NA NA NA NA NA NA 64.29 NA NA NA NA NA NA 53.33 NA NA NA NA NA NA NA NA NA K cassette cwo,noncoding_15870 chr3R + chr3R_6215160_6223084 chr3R_6215160_6222423;chr3R_6222543_6223084 chr3R_6222424_6222542 chr3R_6214846_6215159;chr3R_6223085_6223406 70.83 53.33 92.31 94.74 80.00 90.91 29.03 75.00 69.70 80.00 61.11 58.33 60.00 72.73 92.86 68.18 83.33 64.29 81.82 74.07 75.00 65.85 75.00 78.26 59.09 64.29 68.00 80.95 54.17 74.07 76.92 77.78 82.05 84.21 63.16 62.50 75.00 70.83 62.50 78.05 69.23 65.62 69.23 66.67 75.00 57.89 76.47 62.50 69.23 85.71 79.17 80.00 64.29 63.64 61.11 71.43 64.29 64.00 K alternative_last_exon nrm,CG32458 chr3L + chr3L_23023032_23031111 chr3L_23023032_23023918 chr3L_23031112_23031379 chr3L_23023919_23025301 chr3L_23022968_23023031 87.50 87.50 100.00 66.67 88.89 100.00 92.31 80.00 88.89 100.00 NA 90.00 87.50 83.33 90.00 73.33 100.00 87.50 92.86 89.47 80.00 100.00 90.00 75.00 100.00 88.89 85.71 100.00 100.00 100.00 81.82 83.33 100.00 82.61 83.33 83.33 100.00 100.00 83.33 92.31 75.00 85.71 83.33 84.62 100.00 62.50 60.00 100.00 82.61 75.00 81.82 100.00 100.00 66.67 92.31 60.00 60.00 80.00 K cassette VhaM9_7-2,I_chr3L_21533183_21533251,RI_chr3L_21533183_21533368,I_chr3L_21533305_21533368 chr3L + chr3L_21533183_21533368 chr3L_21533183_21533252;chr3L_21533301_21533368 chr3L_21533253_21533300 chr3L_21533088_21533182;chr3L_21533369_21533468 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.63 100.00 99.13 100.00 99.40 100.00 100.00 100.00 100.00 100.00 100.00 99.63 99.65 100.00 100.00 100.00 100.00 99.03 99.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.36 99.66 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Mct1 chrX + chrX_2089096_2092664;chrX_2088826_2092664 chrX_2089073_2092664 chrX_2092665_2092972;chrX_2088634_2088825 96.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.24 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 91.67 NA NA NA 96.43 100.00 NA NA NA NA NA 100.00 NA NA NA 97.73 NA NA NA NA NA NA 86.96 NA K jcn_only_AA CG18619,RI_chr2L_10264634_10264691,RI_chr2L_10264634_10264699,I_chr2L_10264634_10264770,RI_chr2L_10265562_10265628 chr2L + chr2L_10264265_10264551 chr2L_10264265_10264548 chr2L_10264122_10264264;chr2L_10264552_10264633 44.08 20.00 37.84 45.83 41.51 40.32 37.89 44.22 39.44 NA 50.00 42.48 53.00 46.03 39.77 43.93 56.67 36.17 46.67 59.07 50.00 43.43 64.15 64.58 47.83 31.65 79.55 62.86 53.70 53.95 36.67 41.38 36.22 28.57 39.53 50.00 69.62 15.79 65.71 54.79 48.65 46.21 32.14 35.40 34.18 41.89 64.71 37.84 38.31 57.58 60.66 27.03 69.05 55.70 41.67 25.81 57.32 35.63 K jcn_only_AD Dscam,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3249373_3250528;chr2R_3249373_3251682;chr2R_3249373_3254309;chr2R_3249373_3253447;chr2R_3249373_3252522;chr2R_3249373_3252236;chr2R_3249373_3252816;chr2R_3249373_3253970;chr2R_3249373_3251960;chr2R_3249373_3251099 chr2R_3249373_3250836 chr2R_3249273_3249372 12.50 21.43 12.77 26.56 8.00 12.90 12.50 13.79 10.98 18.18 NA 14.71 2.70 14.71 4.88 11.32 11.11 9.68 14.29 10.00 20.00 6.25 12.86 22.22 14.89 8.00 32.43 22.58 7.14 18.82 0.00 7.14 11.25 12.73 9.68 7.14 3.64 15.79 14.63 14.61 10.34 12.31 9.38 8.62 18.18 7.89 12.50 8.14 16.42 NA 11.11 20.00 6.45 NA 13.46 25.00 NA 15.22 K intron_retention CG32856,mor chr3R - chr3R_11790742_11790795 chr3R_11790741_11790742;chr3R_11790795_11790796 chr3R_11790400_11790741;chr3R_11790796_11790909 5.26 0.00 0.00 15.15 0.00 5.26 12.00 0.00 4.65 NA 0.00 7.32 6.67 5.88 0.00 16.67 NA 0.00 0.00 8.11 0.00 NA 10.00 5.71 NA 4.35 14.29 NA NA NA 6.25 NA NA 0.00 NA 0.00 0.00 NA 0.00 11.76 NA 13.16 0.00 0.00 NA 0.00 11.54 NA 14.29 17.65 0.00 10.00 13.33 14.29 5.56 6.67 4.35 0.00 K intron_retention CEI_chrX_17177009_17196871,CG5445,I_chrX_17196752_17196871,RI_chrX_17196772_17196871,I_chrX_17196820_17196875,I_chrX_17198393_17198730 chrX + chrX_17196820_17196875 chrX_17196819_17196820;chrX_17196875_17196876 chrX_17196720_17196819;chrX_17196876_17196971 100.00 100.00 91.67 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA 88.89 100.00 NA NA 100.00 92.86 100.00 NA 100.00 NA NA NA 91.67 90.91 NA NA NA NA 100.00 100.00 NA 100.00 NA NA 88.89 88.89 NA 100.00 NA NA NA 100.00 NA NA 100.00 NA 100.00 NA NA NA 90.91 NA NA NA K multi_cassette eIF-4E,RI_chr3L_9394049_9394139,RI_chr3L_9394054_9394756,I_chr3L_9394308_9394756,RI_chr3L_9394468_9394631,I_chr3L_9394468_9394659,I_chr3L_9394468_9395155,I_chr3L_9394468_9395240,I_chr3L_9394468_9395446,I_chr3L_9394685_9394756,RI_chr3L_9394707_9395016,RI_chr3L_9394707_9395198,I_chr3L_9394707_9395309,I_chr3L_9394819_9394884,I_chr3L_9394819_9395016,I_chr3L_9394819_9395198,I_chr3L_9394819_9395379 chr3L - chr3L_9394054_9395379 chr3L_9394054_9394139;chr3L_9394468_9394631;chr3L_9394707_9395379 chr3L_9394140_9394467;chr3L_9394632_9394706 chr3L_9393954_9394053;chr3L_9395380_9395409 23.29 18.33 25.58 19.55 16.67 25.00 37.93 23.29 21.92 21.05 45.83 37.36 19.23 22.86 22.41 40.00 29.03 26.19 32.00 25.00 31.25 52.94 18.18 17.65 11.86 21.57 19.74 10.71 20.37 26.83 28.57 23.53 53.33 28.36 16.36 19.40 15.69 15.00 18.00 23.61 28.81 27.71 19.51 31.25 25.58 31.34 13.51 34.69 25.53 17.39 23.08 22.86 17.57 10.53 40.38 17.81 26.09 28.57 N alternative_acceptor CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789733_9789790;chr2L_9789740_9789790;chr2L_9789694_9789790;chr2L_9789718_9789790;chr2L_9789751_9789790 chr2L_9789598_9789790 chr2L_9789791_9789832;chr2L_9789594_9789597 3.45 3.33 5.71 4.65 4.76 4.35 1.92 0.00 4.11 0.00 6.25 0.00 0.00 6.45 8.82 3.33 4.17 4.17 3.45 4.62 6.67 3.45 1.96 5.56 3.23 5.56 1.96 0.00 3.45 0.00 2.22 4.76 3.33 1.96 7.69 3.45 0.00 0.00 0.00 6.56 0.00 1.89 3.85 3.03 5.00 3.03 12.00 8.51 3.17 4.35 2.63 3.45 5.26 5.56 2.70 0.00 4.55 4.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389762_2395659 chrX_2389762_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2393243;chrX_2393712_2395659 chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664;chrX_2393244_2393711 chrX_2389645_2389761;chrX_2395660_2395759 75.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor Zyx102EF,I_chr4_1078380_1078835,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1078666_1078835;chr4_1078644_1078835;chr4_1078778_1078835 chr4_1078782_1078835 chr4_1078836_1078848;chr4_1078433_1078643 30.43 44.44 25.00 22.22 40.00 26.67 46.51 21.74 41.46 16.67 31.25 40.00 20.00 22.22 35.29 29.79 50.00 58.33 40.74 10.00 57.14 16.67 26.32 15.00 33.33 55.00 28.57 28.57 10.00 33.33 40.00 20.00 28.57 37.50 33.33 36.36 25.00 28.57 30.77 37.50 25.00 39.47 54.55 30.43 25.00 42.86 31.25 30.77 42.59 8.33 23.53 25.00 23.08 23.53 33.33 50.00 10.00 17.24 K jcn_only_AD Pka-C1,I_chr2L_9685203_9685594 chr2L - chr2L_9685203_9696190 chr2L_9685203_9685594 chr2L_9685103_9685202;chr2L_9696191_9698233 0.00 0.00 0.00 0.59 0.00 0.00 0.64 3.72 0.50 0.00 0.00 1.05 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.41 2.60 0.00 0.88 0.00 0.00 0.00 0.00 0.44 2.27 0.00 0.00 1.05 0.00 0.00 0.43 7.27 0.00 0.00 2.38 0.00 0.00 0.00 1.28 0.00 K intron_retention lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3956340_3957375 chr2R_3956339_3956340;chr2R_3957375_3957376 chr2R_3956317_3956339;chr2R_3957376_3957784 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG17019,I_chr2R_8821104_8821171 chr2R - chr2R_8821104_8821175 chr2R_8821104_8821171 chr2R_8821004_8821103;chr2R_8821176_8821271 0.00 0.00 0.00 0.00 0.00 1.25 0.90 0.83 0.00 0.00 0.00 1.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.84 0.00 1.90 0.00 0.00 0.96 0.00 3.74 0.85 0.00 0.00 0.00 1.46 0.00 0.85 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pkc98E chr3R + chr3R_24871441_24871591 chr3R_24871440_24871441;chr3R_24871591_24871592 chr3R_24870222_24871440;chr3R_24871592_24871731 0.00 0.00 0.00 5.56 0.00 0.00 0.00 2.13 2.82 NA 0.00 3.17 0.00 0.00 0.00 2.44 0.00 0.00 0.00 1.61 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 1.89 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 NA 0.00 2.38 0.00 0.00 0.00 K intron_retention apt chr2R + chr2R_19485154_19485215 chr2R_19485153_19485154;chr2R_19485215_19485216 chr2R_19484907_19485153;chr2R_19485216_19487028 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD Hcf,I_chr4_391984_392875 chr4 + chr4_380985_381212;chr4_380602_381212;chr4_380911_381212;chr4_380646_381212 chr4_380607_381212 chr4_381213_381632;chr4_380600_380601 0.00 NA NA 8.70 NA NA 0.00 0.00 1.96 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.03 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.98 NA NA NA NA NA NA NA NA NA K alternative_donor alpha-Man-I,I_chrX_10218352_10219759,I_chrX_10218390_10219759 chrX - chrX_10218352_10219846;chrX_10218352_10219816;chrX_10218352_10219918;chrX_10218352_10219759;chrX_10218352_10219665;chrX_10218352_10219823 chrX_10218352_10219708 chrX_10218290_10218351;chrX_10219919_10219979 12.50 14.29 16.67 7.69 16.67 11.11 10.00 5.88 5.26 0.00 20.00 10.00 NA 11.11 12.50 9.52 16.67 16.67 12.50 7.14 16.67 11.11 12.50 14.29 14.29 14.29 25.00 NA NA 11.11 14.29 NA 14.29 8.33 NA 16.67 16.67 14.29 NA 12.50 16.67 7.69 12.50 0.00 NA 20.00 NA 11.11 13.33 0.00 10.00 12.50 20.00 NA 11.11 0.00 20.00 0.00 K intron_retention Sur chr2L - chr2L_10182931_10183007 chr2L_10182930_10182931;chr2L_10183007_10183008 chr2L_10182716_10182930;chr2L_10183008_10183202 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Drp1 chr2L - chr2L_2582403_2582469 chr2L_2582403_2582465 chr2L_2582174_2582402;chr2L_2582470_2582811 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.26 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG32016,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_978750_978910 chr4_978749_978750;chr4_978910_978911 chr4_978632_978749;chr4_978911_978958 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 91.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG5585,I_chr3L_20339275_20339338,I_chr3L_20340649_20340712 chr3L - chr3L_20340649_20340712 chr3L_20340659_20340712 chr3L_20340713_20340780;chr3L_20340590_20340648 99.06 100.00 100.00 96.83 100.00 92.86 100.00 98.65 98.73 92.00 100.00 100.00 97.37 96.77 96.00 100.00 NA 100.00 100.00 99.08 100.00 96.88 97.10 97.92 100.00 97.22 97.62 100.00 100.00 96.67 87.80 92.59 100.00 98.15 96.97 100.00 100.00 96.43 100.00 100.00 100.00 98.75 100.00 100.00 95.12 93.33 100.00 96.00 98.65 100.00 100.00 100.00 100.00 96.55 94.87 93.33 100.00 99.04 K intron_retention bbx chrX + chrX_21239153_21240718 chrX_21239152_21239153;chrX_21240718_21240719 chrX_21239010_21239152;chrX_21240719_21241749 32.88 NA NA NA 20.00 NA 38.46 38.46 37.50 NA NA 53.33 NA NA NA 53.33 NA NA NA 25.00 NA 26.32 NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA 23.08 NA 27.78 NA NA NA NA NA NA 29.41 NA NA NA NA NA NA NA NA NA K cassette CG12304 chr3L + chr3L_15576982_15577386 chr3L_15576982_15577096;chr3L_15577196_15577386 chr3L_15577097_15577195 chr3L_15576765_15576981;chr3L_15577387_15577539 20.45 16.35 24.62 13.51 33.33 21.57 22.22 19.70 23.44 16.67 25.00 24.27 20.00 23.91 36.36 52.46 30.95 23.91 28.57 17.42 33.33 12.90 12.87 16.03 10.42 22.22 15.38 19.64 17.14 22.77 40.00 22.50 27.63 24.69 20.00 20.45 17.90 15.17 17.83 19.21 23.08 22.22 23.08 18.63 20.45 19.33 18.31 30.00 23.21 12.60 17.05 15.91 15.38 13.68 26.56 18.11 14.29 28.38 K jcn_only_AD Npc1a chr2L - chr2L_10218890_10220868;chr2L_10218890_10220834;chr2L_10218890_10220692 chr2L_10218890_10220796 chr2L_10218779_10218889;chr2L_10220869_10220873 10.06 1.82 10.61 11.32 9.26 0.00 10.79 8.80 9.15 3.85 13.33 20.43 10.81 6.52 5.08 13.64 7.02 6.00 13.33 21.79 11.11 23.53 6.67 10.20 12.00 16.67 6.52 NA 13.51 14.00 14.52 NA 13.21 9.56 17.50 25.64 21.95 7.41 8.57 7.14 4.00 11.02 10.20 12.16 NA 3.23 4.55 5.71 9.92 NA 9.09 6.98 NA NA 5.26 18.18 NA 2.56 K intron_retention CG3632,RI_chrX_16195880_16196242 chrX + chrX_16190917_16191693 chrX_16190916_16190917;chrX_16191693_16191694 chrX_16190893_16190916;chrX_16191694_16191751 60.00 60.00 60.00 50.00 NA NA 60.00 70.83 69.57 NA NA 50.00 NA NA NA 70.59 NA NA 60.00 55.00 NA 81.82 57.14 53.33 61.54 NA 75.00 77.78 NA NA 53.33 NA NA 65.00 58.33 58.33 60.00 46.15 69.23 50.00 NA 55.00 NA 61.54 75.00 93.33 80.00 72.73 70.59 NA 57.14 38.46 NA NA 70.00 NA NA 76.92 K jcn_only_AD dorsal,RI_chr2L_17438018_17439189,FI_chr2L_17449369_17450215,noncoding_3500,RI_chr2L_17450002_17450219 chr2L - chr2L_17449369_17449875;chr2L_17449369_17450219;chr2L_17449369_17450310;chr2L_17449369_17450215 chr2L_17449369_17450325 chr2L_17449296_17449368;chr2L_17450326_17450359 0.00 0.00 0.00 0.97 0.00 0.00 1.06 0.00 2.19 0.00 0.00 0.00 1.79 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.75 0.00 0.00 0.00 0.00 1.35 0.00 0.00 2.27 0.00 0.00 0.00 2.17 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 K alternative_donor shi,RI_chrX_15786633_15786860,RE_chrX_15793108_15795563 chrX + chrX_15786474_15786860;chrX_15786285_15786860;chrX_15786615_15786860;chrX_15786200_15786860;chrX_15786394_15786860 chrX_15786603_15786860 chrX_15786861_15786960;chrX_15786192_15786199 5.71 14.29 15.79 6.90 0.00 9.09 5.71 7.14 8.16 0.00 0.00 9.38 0.00 9.09 5.00 5.00 10.00 0.00 3.23 10.26 0.00 0.00 10.00 9.09 25.00 5.56 10.00 0.00 8.33 6.67 10.00 14.29 10.53 9.62 0.00 16.67 0.00 0.00 0.00 13.79 0.00 7.50 11.11 10.53 0.00 0.00 14.29 4.55 7.32 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 K intron_retention CG1623,I_chr2R_5717365_5717896 chr2R - chr2R_5717365_5721013 chr2R_5717364_5717365;chr2R_5721013_5721014 chr2R_5717265_5717364;chr2R_5721014_5721052 6.67 0.00 11.11 2.27 0.00 6.45 2.38 7.55 5.63 5.88 7.69 13.16 6.67 14.29 15.56 10.00 0.00 13.33 8.70 5.97 13.04 3.28 NA NA NA 0.00 NA NA NA NA 7.69 0.00 0.00 10.91 0.00 NA 0.00 NA NA 3.12 12.50 7.69 13.16 0.00 6.67 16.67 5.56 9.09 8.11 23.08 NA NA NA NA 8.33 NA 0.00 2.63 K intron_retention Incenp chr2R + chr2R_3166303_3166365 chr2R_3166302_3166303;chr2R_3166365_3166366 chr2R_3165972_3166302;chr2R_3166366_3166546 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 4.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Cortactin chr3R - chr3R_16889831_16890016 chr3R_16889834_16890016 chr3R_16890017_16890085;chr3R_16889620_16889830 8.51 8.79 8.70 11.48 8.65 7.34 6.52 9.57 8.65 5.81 7.41 12.50 11.11 8.33 8.86 8.29 7.62 7.91 7.09 6.76 7.80 6.68 9.49 9.48 7.84 7.69 8.94 9.47 8.05 7.89 9.38 8.42 5.96 9.74 9.38 10.17 9.61 8.11 10.50 8.78 9.30 8.15 9.90 8.97 5.15 9.20 9.84 6.77 8.53 9.52 10.45 7.32 6.00 8.51 8.05 7.55 8.47 5.79 K alternative_last_exon Ntf-2,RI_chrX_20906749_20906857,I_chrX_20906749_20909772 chrX + chrX_20906749_20906857;chrX_20906749_20909772 chrX_20906749_20907425 chrX_20909773_20914328 chrX_20907426_20907664 chrX_20906649_20906748 97.38 98.55 98.36 98.45 96.19 98.95 97.97 98.11 97.74 95.59 98.18 96.14 98.20 97.94 97.86 97.88 98.10 93.69 98.29 97.32 98.08 92.05 97.53 98.86 98.89 98.25 97.70 93.81 95.10 96.40 93.91 88.39 96.49 97.38 96.67 93.10 97.53 97.06 96.00 97.04 96.06 98.80 99.04 96.32 92.57 97.65 96.83 96.30 97.83 95.94 94.04 96.94 97.37 92.80 99.32 96.14 98.02 99.44 K intron_retention msk,I_chr3L_8109906_8110404 chr3L + chr3L_8111194_8111256 chr3L_8111193_8111194;chr3L_8111256_8111257 chr3L_8110696_8111193;chr3L_8111257_8111433 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.17 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive Eb1,RI_chr2R_2640290_2642206,I_chr2R_2640494_2642206,I_chr2R_2641187_2642206,RI_chr2R_2641944_2642025,I_chr2R_2641954_2642206,I_chr2R_2642491_2642549 chr2R + chr2R_2640494_2641684,chr2R_2641944_2642209 chr2R_2640494_2640731,chr2R_2641009_2642209 chr2R_2641685_2641943 chr2R_2640732_2641008 chr2R_2640394_2640493;chr2R_2642210_2642306 10.71 6.67 4.76 8.33 5.00 10.00 15.38 10.71 9.43 15.00 15.79 13.46 20.00 14.29 10.71 12.50 14.29 9.52 14.29 4.17 15.00 18.92 4.88 2.94 25.00 5.26 14.29 16.67 6.67 10.71 26.92 14.81 7.50 6.45 21.43 18.18 5.56 9.68 18.18 7.50 11.54 12.73 5.56 12.00 7.69 8.11 9.38 7.69 9.52 7.14 13.51 21.43 4.17 9.09 19.05 10.00 15.79 3.23 K intron_retention CG18347 chr3R + chr3R_7795952_7796009 chr3R_7795951_7795952;chr3R_7796009_7796010 chr3R_7795817_7795951;chr3R_7796010_7796495 0.00 0.00 0.00 13.89 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.08 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 6.25 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG7609,ATPsyn-gamma,I_chr3R_25574492_25574541 chr3R - chr3R_25574492_25574545 chr3R_25574492_25574541 chr3R_25574392_25574491;chr3R_25574546_25574564 1.17 0.74 0.81 1.69 1.11 1.23 1.92 1.05 1.28 1.85 1.26 1.34 1.89 0.45 0.89 0.69 1.65 1.12 1.51 1.17 1.20 0.00 0.95 0.00 0.88 0.58 0.00 9.68 6.56 0.00 1.23 1.57 0.00 0.60 2.56 0.00 1.35 4.11 1.55 0.62 1.19 1.29 0.76 0.00 0.29 0.00 0.00 0.00 0.87 1.39 1.54 0.72 1.39 4.35 1.30 1.43 0.99 1.59 K intron_retention CG5938,I_chr3R_23101276_23101354,RI_chr3R_23101686_23102014 chr3R + chr3R_23101276_23101354 chr3R_23101275_23101276;chr3R_23101354_23101355 chr3R_23101176_23101275;chr3R_23101355_23101454 100.00 100.00 98.08 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 98.89 100.00 100.00 100.00 100.00 100.00 100.00 98.73 98.59 100.00 98.48 100.00 100.00 100.00 98.18 98.18 100.00 100.00 100.00 100.00 100.00 98.63 100.00 96.77 98.39 100.00 98.95 100.00 100.00 98.65 100.00 100.00 100.00 100.00 95.00 98.00 100.00 100.00 96.74 K intron_retention Gfr chr3R - chr3R_4128734_4128786 chr3R_4128733_4128734;chr3R_4128786_4128787 chr3R_4128408_4128733;chr3R_4128787_4129510 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 13.04 0.00 7.69 0.00 0.00 0.00 11.76 5.00 0.00 0.00 0.00 2.38 NA 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.67 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Fer1HCH,I_chr3R_26212319_26213496,I_chr3R_26213132_26213185 chr3R - chr3R_26211979_26212040 chr3R_26211978_26211979;chr3R_26212040_26212041 chr3R_26211898_26211978;chr3R_26212041_26212109 0.23 0.07 0.20 0.59 0.28 0.00 0.21 0.42 0.40 0.17 0.28 0.11 0.14 0.00 0.00 0.13 0.00 0.13 0.13 0.15 0.13 0.29 0.41 0.36 0.48 0.13 0.24 0.50 2.56 0.26 0.00 0.23 0.22 0.27 0.25 0.25 0.24 0.14 0.22 0.24 0.25 0.11 0.16 0.46 0.20 0.34 0.40 0.44 0.17 0.24 0.30 0.00 0.22 0.25 0.23 0.31 0.11 0.20 K alternative_acceptor TMS1 chr3L + chr3L_16407594_16407920;chr3L_16407594_16407905;chr3L_16407594_16407914;chr3L_16407594_16407893 chr3L_16407594_16407902 chr3L_16407384_16407593;chr3L_16407921_16408056 23.04 23.08 20.47 25.73 21.78 23.42 26.96 27.39 23.18 24.55 17.92 22.05 16.83 19.28 18.18 27.18 17.05 22.45 22.68 21.59 19.61 23.65 23.03 23.31 22.43 16.49 19.75 11.32 22.14 23.97 27.97 25.00 21.52 24.28 20.00 27.83 24.03 25.32 21.94 23.71 23.04 20.76 23.26 27.81 21.89 23.47 25.66 21.09 20.20 23.42 22.14 25.61 26.80 24.04 18.63 23.12 21.94 24.32 K intron_retention Aats-ala,CG13393 chr2L - chr2L_8383831_8383893 chr2L_8383830_8383831;chr2L_8383893_8383894 chr2L_8383611_8383830;chr2L_8383894_8384132 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.82 100.00 100.00 99.69 100.00 100.00 100.00 100.00 99.77 100.00 100.00 100.00 99.88 100.00 100.00 100.00 99.81 100.00 100.00 99.82 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.77 100.00 100.00 100.00 100.00 99.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.73 100.00 100.00 100.00 100.00 K alternative_donor CG5805 chr3R - chr3R_20612625_20613016 chr3R_20612625_20612713 chr3R_20611695_20612624;chr3R_20613017_20613134 5.71 2.86 4.17 5.00 3.12 6.06 5.71 3.08 3.81 6.67 6.25 4.76 2.86 6.67 0.00 2.99 7.41 10.26 0.00 1.42 2.94 11.63 4.44 16.00 3.23 8.33 7.32 10.81 22.45 11.11 4.62 11.54 10.81 4.62 7.69 5.41 5.17 4.35 5.00 8.51 11.11 4.41 6.67 5.26 12.00 4.17 3.03 16.67 2.94 6.25 2.13 8.70 5.88 6.45 9.68 8.82 0.00 11.11 K alternative_donor CG1647 chr3R + chr3R_24646228_24646293 chr3R_24646240_24646293 chr3R_24646294_24646440;chr3R_24645947_24646227 93.75 NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention exba,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1425890_1426125 chr3R_1425889_1425890;chr3R_1426125_1426126 chr3R_1425790_1425889;chr3R_1426126_1426166 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG14130 chr3L + chr3L_11808661_11808728 chr3L_11808661_11808704 chr3L_11808586_11808660;chr3L_11808729_11808922 6.67 NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CE_chrX_20766225_20927825,CG1529,RI_chrX_20902550_20902613 chrX - chrX_20902561_20902613 chrX_20902560_20902561;chrX_20902613_20902614 chrX_20899674_20902560;chrX_20902614_20902713 7.69 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 12.50 NA NA NA NA NA NA NA 0.00 NA 13.33 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA 25.00 K alternative_acceptor tai,I_chr2L_9191814_9206231 chr2L + chr2L_9243546_9243647 chr2L_9243546_9243611 chr2L_9243235_9243545;chr2L_9243648_9243900 95.56 94.94 93.10 98.18 93.55 93.75 95.56 97.56 96.35 97.37 90.57 93.75 93.55 97.96 98.65 98.28 94.64 96.77 100.00 97.08 94.55 98.28 95.56 96.49 95.56 97.50 93.52 90.15 95.26 95.45 94.67 94.20 95.73 96.00 96.63 97.20 95.73 96.43 95.39 92.00 93.94 98.61 98.21 95.16 94.39 95.10 94.81 93.37 95.73 95.77 96.06 91.67 96.83 94.55 96.10 98.41 98.18 90.53 K intron_retention I_chr2R_19265701_19270570,CG3530,CG3520 chr2R - chr2R_19279427_19280886 chr2R_19279426_19279427;chr2R_19280886_19280887 chr2R_19279264_19279426;chr2R_19280887_19281003 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 1.92 0.00 0.76 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3714,I_chr2L_4190825_4191774,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,I_chr2L_4196780_4197306,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4196815_4197964 chr2L_4196814_4196815;chr2L_4197964_4197965 chr2L_4196715_4196814;chr2L_4197965_4198000 86.55 NA NA 90.00 NA NA 84.21 NA 81.82 NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG31064,RI_chr3R_23056388_23064246,I_chr3R_23069667_23070365 chr3R - chr3R_23057922_23058194 chr3R_23057921_23057922;chr3R_23058194_23058195 chr3R_23057866_23057921;chr3R_23058195_23058597 14.29 NA NA 14.29 NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA NA 11.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Gs1l,I_chr2L_4456517_4456723,I_chr2L_4458058_4458120 chr2L - chr2L_4456521_4456723;chr2L_4456521_4456719 chr2L_4456521_4456725 chr2L_4456386_4456520;chr2L_4456726_4456801 26.30 NA NA 31.03 20.00 25.00 14.29 14.29 26.51 NA 22.86 16.67 12.50 30.00 19.44 28.57 25.93 17.39 33.33 27.03 24.24 NA NA 28.57 NA 22.73 NA NA NA NA 12.00 NA 29.73 27.78 NA NA 33.33 NA 26.09 42.86 42.86 17.24 22.73 34.62 34.48 27.50 NA 43.75 11.11 NA NA 12.50 NA NA 19.35 40.00 41.67 45.16 K intron_retention I_chrX_19573364_19573474,Mer,E_chrX_19584965_19587100,CG14229 chrX - chrX_19585669_19585730 chrX_19585668_19585669;chrX_19585730_19585731 chrX_19584277_19585668;chrX_19585731_19585967 0.00 0.00 0.00 0.98 0.00 0.00 3.03 1.09 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.01 0.00 2.35 0.00 0.00 0.00 0.00 4.55 11.36 2.82 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 1.89 K intron_retention CG11537 chr3L - chr3L_3129424_3129586 chr3L_3129423_3129424;chr3L_3129586_3129587 chr3L_3128042_3129423;chr3L_3129587_3129859 1.15 1.15 0.88 2.68 0.00 1.03 3.57 0.87 0.00 11.63 0.00 2.58 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.47 0.00 3.67 1.61 1.09 4.62 2.27 2.13 5.56 14.49 0.00 0.00 2.86 4.21 1.46 4.00 8.24 0.95 0.00 1.54 1.35 5.33 1.08 0.00 3.57 0.88 0.00 1.94 1.87 1.74 1.32 1.98 1.82 0.00 2.53 0.83 0.00 3.12 1.12 K intron_retention CG9663,I_chr2L_3296691_3296743 chr2L - chr2L_3297389_3297446 chr2L_3297388_3297389;chr2L_3297446_3297447 chr2L_3297053_3297388;chr2L_3297447_3297564 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 4.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG17912,I_chr2L_16749189_16749266 chr2L + chr2L_16749189_16749290 chr2L_16749189_16749266 chr2L_16749153_16749188;chr2L_16749291_16749366 1.96 0.00 5.88 16.67 0.00 0.00 3.57 12.50 1.56 2.56 7.14 3.23 NA 0.00 0.00 0.00 NA 0.00 NA 1.92 0.00 16.67 1.08 1.47 3.12 NA 1.96 4.65 10.71 1.64 7.14 NA 3.23 4.00 0.00 9.38 3.33 1.28 0.00 1.45 6.25 2.08 NA 0.00 0.00 0.00 2.17 7.41 2.63 0.00 3.64 3.03 2.78 0.00 0.00 0.00 0.00 4.35 K intron_retention Mys45A chr2R - chr2R_5000268_5000378 chr2R_5000267_5000268;chr2R_5000378_5000379 chr2R_4999006_5000267;chr2R_5000379_5000837 100.00 98.28 100.00 100.00 100.00 100.00 100.00 100.00 98.97 100.00 100.00 100.00 97.67 97.73 100.00 100.00 97.50 97.56 97.87 99.10 100.00 100.00 98.72 95.89 100.00 100.00 100.00 100.00 100.00 100.00 98.00 100.00 98.04 98.72 98.08 100.00 100.00 100.00 100.00 100.00 98.63 98.99 97.06 98.18 98.61 98.90 100.00 98.06 100.00 98.57 100.00 100.00 98.59 100.00 98.18 100.00 98.99 99.39 K intron_retention Tango13,I_chrX_13480088_13480998,I_chrX_13483861_13483954 chrX + chrX_13480126_13483954 chrX_13480125_13480126;chrX_13483954_13483955 chrX_13479927_13480125;chrX_13483955_13484054 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA 12.50 NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA 26.67 NA NA 25.00 NA NA NA NA 0.00 NA NA NA NA NA 25.00 NA NA NA NA NA NA NA K intron_retention CG17724,Kdm4B,seq chr2R - chr2R_9072681_9073288 chr2R_9072680_9072681;chr2R_9073288_9073289 chr2R_9072662_9072680;chr2R_9073289_9073317 6.79 NA 0.00 0.00 11.76 NA 6.67 7.32 5.00 NA 12.50 8.11 NA 12.50 0.00 9.09 0.00 0.00 0.00 3.12 0.00 15.38 12.50 5.00 7.14 NA 11.11 NA 7.69 NA 0.00 NA 12.50 6.06 NA 0.00 8.00 0.00 13.04 6.90 NA 4.17 0.00 0.00 35.71 NA NA 16.67 9.80 25.00 10.34 NA NA NA 0.00 NA NA 0.00 K intron_retention CG4769 chr3L + chr3L_5353840_5353976 chr3L_5353839_5353840;chr3L_5353976_5353977 chr3L_5353792_5353839;chr3L_5353977_5354125 1.38 1.21 1.00 1.75 0.00 0.75 2.80 1.80 1.38 0.72 1.01 1.70 0.00 0.00 2.21 1.79 0.00 0.00 1.98 1.83 0.00 5.83 0.00 0.93 1.52 3.45 1.38 3.31 5.51 1.94 1.75 3.23 4.96 2.65 0.00 3.81 0.34 0.52 0.00 4.47 0.87 0.36 0.00 1.63 3.03 2.53 1.36 5.30 1.04 0.00 1.28 1.94 2.40 2.38 0.73 0.00 0.42 6.54 N jcn_only_AA CG18228 chr3R - chr3R_4087322_4087522;chr3R_4087428_4087522 chr3R_4087273_4087522 chr3R_4087523_4087669;chr3R_4087045_4087272 60.00 68.18 62.96 61.90 72.73 55.88 46.75 62.92 59.29 NA NA 52.94 74.00 72.22 59.26 60.00 63.64 63.64 56.52 58.82 56.52 91.30 54.17 55.88 NA NA 53.33 57.14 NA NA 59.02 NA NA 60.66 68.00 NA NA 60.00 NA 41.67 NA 58.46 75.61 NA NA 64.71 66.67 NA 66.28 63.41 65.79 47.37 NA 54.55 54.55 54.17 66.67 54.17 K alternative_acceptor srp,I_chr3R_11826508_11826910 chr3R + chr3R_11828046_11828592 chr3R_11828046_11828128 chr3R_11827892_11828045;chr3R_11828593_11829749 100.00 100.00 100.00 99.78 99.57 99.57 99.69 100.00 100.00 100.00 99.61 99.80 100.00 100.00 99.34 100.00 99.53 99.62 100.00 99.88 99.61 100.00 99.82 99.74 100.00 99.51 99.41 99.66 99.67 100.00 99.59 100.00 99.82 99.75 100.00 100.00 100.00 100.00 99.81 99.82 100.00 99.64 100.00 100.00 100.00 100.00 100.00 99.79 100.00 100.00 99.75 100.00 100.00 99.68 100.00 99.70 100.00 100.00 K intron_retention CG17838,I_chr3R_16623576_16628011,I_chr3R_16625404_16631668 chr3R + chr3R_16624132_16628011 chr3R_16624131_16624132;chr3R_16628011_16628012 chr3R_16624037_16624131;chr3R_16628012_16628019 19.05 NA 19.05 13.04 31.25 23.81 40.00 45.83 27.27 7.69 25.00 16.67 41.67 NA 23.08 30.77 NA 10.53 22.22 20.00 16.67 0.00 13.79 0.00 19.05 26.09 NA 30.77 NA 20.00 10.53 NA 10.00 23.33 13.33 10.00 11.63 3.45 5.71 7.69 NA 25.00 NA 14.29 NA NA NA 11.11 30.43 NA NA NA NA NA 19.05 NA NA NA K alternative_acceptor CG3558,RI_chr2L_2995071_2997790 chr2L + chr2L_2995071_2995435 chr2L_2995071_2995411 chr2L_2994971_2995070;chr2L_2995436_2996435 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.37 0.00 1.20 1.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.46 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.93 K alternative_acceptor CG13742,I_chr2R_4979276_4979936 chr2R - chr2R_4973398_4973449;chr2R_4973359_4973449 chr2R_4973326_4973449 chr2R_4973450_4973534;chr2R_4973308_4973325 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K cassette Gel,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_61047_62274 chr3R_61047_61809;chr3R_61871_62274 chr3R_61810_61870 chr3R_61015_61046;chr3R_62275_62526 1.23 0.75 2.28 0.50 1.79 1.52 0.87 0.88 1.01 0.52 1.73 1.09 0.86 2.46 1.20 1.58 0.82 1.63 1.41 1.65 3.18 0.58 1.02 1.17 0.98 1.38 1.37 1.19 0.00 1.15 1.38 1.85 0.80 1.27 1.37 1.92 1.75 0.85 1.53 1.06 0.44 1.43 1.56 0.82 1.52 2.35 1.00 1.08 1.43 0.74 1.65 1.52 0.95 1.23 1.24 1.40 0.25 0.62 K intron_retention Gs1l,I_chr2L_4456517_4456723 chr2L - chr2L_4456076_4456385 chr2L_4456075_4456076;chr2L_4456385_4456386 chr2L_4456014_4456075;chr2L_4456386_4456516 52.78 52.63 58.82 46.67 60.00 50.00 68.75 61.90 66.67 47.62 40.00 62.96 NA 50.00 50.00 86.67 53.85 46.67 77.78 63.64 43.75 92.31 34.88 56.25 52.94 47.06 32.76 34.88 65.38 48.15 67.44 63.16 47.22 35.48 46.67 48.48 42.86 50.00 57.14 67.86 56.00 56.76 53.33 52.00 53.49 50.00 55.56 61.11 52.00 50.00 66.67 56.25 52.63 48.48 59.09 50.00 59.09 44.44 K intron_retention CG31033,RI_chr3R_25658089_25658914 chr3R - chr3R_25654249_25657411 chr3R_25654248_25654249;chr3R_25657411_25657412 chr3R_25653948_25654248;chr3R_25657412_25657554 1.64 1.83 2.74 9.62 0.00 0.00 7.35 0.00 2.50 2.08 0.00 3.57 0.00 0.00 0.00 0.00 0.00 3.64 3.57 2.72 4.08 5.32 2.08 1.59 3.12 0.00 3.17 5.13 0.00 2.08 3.28 1.12 1.52 0.00 1.30 3.49 2.82 0.00 2.65 1.64 3.49 1.60 0.00 0.00 1.72 1.61 1.92 2.83 1.85 3.31 3.17 0.00 0.88 0.00 1.30 0.00 0.00 1.46 K intron_retention CG32809,I_chrX_1576304_1577129,I_chrX_1576463_1577129,I_chrX_1576815_1577129,I_chrX_1577031_1577129,CEI_chrX_1579569_1579679,RI_chrX_1585391_1586471,I_chrX_1589508_1589564 chrX - chrX_1576463_1576730 chrX_1576462_1576463;chrX_1576730_1576731 chrX_1576400_1576462;chrX_1576731_1576814 4.55 NA NA NA NA 0.00 NA 6.67 4.55 NA NA 7.69 NA NA 14.29 NA NA NA NA 4.35 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 5.88 14.29 NA NA NA 0.00 17.65 NA 4.55 0.00 NA NA NA NA 0.00 0.00 NA NA NA NA NA 9.52 NA NA NA K jcn_only_AA CG17078 chr2L - chr2L_276898_276958 chr2L_276904_276958 chr2L_276959_277212;chr2L_276739_276897 100.00 100.00 96.30 97.96 100.00 96.30 96.88 100.00 98.59 NA 100.00 100.00 100.00 NA 100.00 100.00 96.43 96.00 96.67 100.00 96.00 100.00 100.00 91.30 NA 100.00 97.30 100.00 100.00 94.44 100.00 100.00 96.83 97.37 92.59 100.00 100.00 NA 96.30 98.15 96.43 100.00 100.00 100.00 97.56 96.67 NA 98.55 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 96.30 100.00 K jcn_only_AA CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3018025_3018163;chr2L_3018018_3018163;chr2L_3018082_3018163 chr2L_3018038_3018163 chr2L_3018164_3018185;chr2L_3017982_3018017 0.00 NA NA 0.00 NA 5.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention I_chr2L_6956220_6956307,sip2_CG9188 chr2L - chr2L_6961831_6961894 chr2L_6961830_6961831;chr2L_6961894_6961895 chr2L_6961516_6961830;chr2L_6961895_6963554 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Gp150,I_chr2R_18205316_18205386,I_chr2R_18213233_18213308 chr2R + chr2R_18205274_18205386;chr2R_18205243_18205386;chr2R_18205316_18205386 chr2R_18205282_18205386 chr2R_18205387_18205459;chr2R_18205216_18205242 1.29 0.77 0.00 0.32 0.84 1.95 1.55 0.65 0.51 2.70 1.52 0.79 0.83 0.80 1.29 1.06 0.44 0.29 0.90 1.04 0.53 5.75 1.35 2.00 0.00 0.85 3.45 0.00 5.80 1.11 0.28 3.39 0.00 1.29 3.92 4.29 2.10 4.63 3.19 3.47 0.00 1.07 0.88 5.00 1.01 4.26 2.82 3.36 0.89 2.99 2.38 3.29 0.00 2.94 0.20 2.99 1.92 2.86 K alternative_acceptor bol,RI_chr3L_9117011_9118271 chr3L - chr3L_9117011_9118266;chr3L_9116877_9118266 chr3L_9116901_9118266 chr3L_9118267_9118272;chr3L_9116716_9116876 7.14 NA NA NA NA NA 0.00 NA 14.29 NA NA 25.00 20.00 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 20.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA K intron_retention I_chr3L_834336_834491,Gr61a chr3L + chr3L_842969_843019 chr3L_842968_842969;chr3L_843019_843020 chr3L_842868_842968;chr3L_843020_843028 41.43 NA NA 35.71 NA NA NA 50.00 52.63 NA NA 42.86 NA NA NA NA NA 50.00 NA 50.00 NA NA 38.89 40.00 NA NA 60.00 NA NA NA 25.00 33.33 33.33 NA NA NA 30.77 15.38 NA 55.00 NA 29.41 NA NA NA NA 57.14 60.00 28.57 50.00 NA NA NA 58.33 60.00 NA 40.00 26.67 K intron_retention CG6133,Tip60 chrX - chrX_4009248_4009352 chrX_4009247_4009248;chrX_4009352_4009353 chrX_4009035_4009247;chrX_4009353_4010577 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.66 NA 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 3.70 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 K intron_retention CG10274 chr3L - chr3L_6173895_6173948 chr3L_6173894_6173895;chr3L_6173948_6173949 chr3L_6173281_6173894;chr3L_6173949_6174933 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 NA 0.00 0.00 13.04 5.26 NA NA 0.00 0.00 0.00 0.00 16.67 NA 5.88 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 8.33 4.35 NA 0.00 NA NA NA 0.00 NA K jcn_only_AA tra chr3L - chr3L_16583856_16584103 chr3L_16584031_16584103 chr3L_16584104_16584490;chr3L_16583452_16583855 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 100.00 96.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 NA NA 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA K intron_retention caz,noncoding_24110,RI_chrX_16183147_16183258,RI_chrX_16183356_16185973 chrX + chrX_16183356_16185973 chrX_16183355_16183356;chrX_16185973_16185974 chrX_16183259_16183355;chrX_16185974_16186073 15.00 18.75 NA 26.67 NA NA NA 41.67 45.83 7.14 NA 32.00 NA 30.77 25.00 NA NA NA NA 18.52 NA 16.67 15.15 9.76 8.11 25.00 21.05 28.57 7.89 7.55 3.57 12.50 8.11 22.73 11.11 9.09 9.52 8.33 10.34 11.90 5.71 21.43 NA 15.38 0.00 13.16 17.65 19.72 39.29 0.00 11.11 26.67 15.00 5.88 NA NA 29.41 12.68 K intron_retention I_chr2L_2856176_2856244,RI_chr2L_2856673_2856772,CG2991 chr2L + chr2L_2865419_2865481 chr2L_2865418_2865419;chr2L_2865481_2865482 chr2L_2864969_2865418;chr2L_2865482_2865577 0.00 0.00 0.96 2.29 0.00 0.00 1.52 1.45 1.71 0.67 0.00 1.64 2.70 0.00 0.00 2.04 0.00 1.94 1.37 0.85 1.10 0.27 0.81 0.00 0.00 0.00 3.12 7.25 0.00 0.00 0.93 0.00 0.00 0.70 0.00 0.00 0.66 0.65 0.00 0.50 0.00 1.04 0.00 0.00 0.00 1.02 0.81 0.00 1.21 0.00 0.00 0.00 0.00 0.00 0.88 1.12 0.00 0.00 K alternative_donor CG8202 chr3R + chr3R_4558029_4558091 chr3R_4558033_4558091 chr3R_4558092_4558205;chr3R_4557938_4558028 1.67 0.00 4.44 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 2.78 0.00 1.72 2.13 0.00 0.00 0.00 1.25 0.00 2.00 4.17 3.12 0.00 2.00 1.47 2.94 0.00 1.67 2.99 2.78 0.00 1.92 4.00 2.00 1.12 1.52 1.12 2.53 2.38 1.83 0.00 1.82 0.00 2.27 2.56 3.85 1.10 2.56 1.52 2.50 3.45 3.03 1.72 2.08 0.00 2.70 K intron_retention Adam,I_chr2R_5857058_5857250,I_chr2R_5857078_5857245 chr2R + chr2R_5857713_5857776 chr2R_5857712_5857713;chr2R_5857776_5857777 chr2R_5857424_5857712;chr2R_5857777_5857913 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.29 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.47 0.00 0.25 0.00 0.00 0.57 0.81 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 1.28 0.22 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD eIF-2beta,RI_chr3L_12519486_12519541 chr3L - chr3L_12519486_12519688;chr3L_12519486_12519596;chr3L_12519486_12519541 chr3L_12519486_12519590 chr3L_12519386_12519485;chr3L_12519689_12519829 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.41 0.00 1.90 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.39 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor simj,I_chr3L_10680263_10680313 chr3L + chr3L_10679362_10680175 chr3L_10679362_10680151 chr3L_10679064_10679361;chr3L_10680176_10680262 4.27 4.05 3.03 2.44 2.04 3.57 5.88 1.23 4.65 2.50 4.84 4.39 3.70 4.17 2.60 5.41 10.81 2.67 4.17 3.57 5.36 9.87 4.27 4.81 5.38 5.26 4.92 4.43 4.67 5.03 3.28 2.74 1.38 4.85 5.00 13.11 3.37 5.61 4.88 4.04 8.24 2.78 1.82 4.76 8.20 3.97 4.44 4.84 3.85 4.44 8.09 2.86 1.41 3.08 4.65 4.21 1.54 1.98 K intron_retention RpL19,I_chr2R_20858841_20859293 chr2R - chr2R_20856575_20856640 chr2R_20856574_20856575;chr2R_20856640_20856641 chr2R_20856506_20856574;chr2R_20856641_20856709 0.04 0.00 0.01 0.05 0.00 0.09 0.05 0.05 0.02 0.10 0.00 0.05 0.05 0.04 0.02 0.00 0.04 0.00 0.04 0.01 0.00 0.03 0.03 0.07 0.00 0.04 0.16 0.50 0.00 0.00 0.01 0.00 0.07 0.04 0.05 0.00 0.06 0.03 0.04 0.03 0.04 0.05 0.00 0.00 0.00 0.05 0.08 0.04 0.10 0.06 0.10 0.00 0.07 0.04 0.02 0.06 0.09 0.04 K intron_retention Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24349420_24349755 chr3R_24349419_24349420;chr3R_24349755_24349756 chr3R_24349397_24349419;chr3R_24349756_24349939 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 90.91 NA NA 88.89 NA NA 100.00 NA 95.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 88.89 NA 100.00 91.67 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA K intron_retention Upf2,I_chrX_7969268_7969358,I_chrX_7969312_7969358 chrX - chrX_7969268_7969358 chrX_7969267_7969268;chrX_7969358_7969359 chrX_7969212_7969267;chrX_7969359_7969458 90.91 88.89 NA 76.92 NA 100.00 91.67 88.89 100.00 NA NA 93.33 90.91 100.00 92.31 81.25 77.78 100.00 100.00 93.75 NA 90.91 92.31 83.33 NA 100.00 100.00 90.00 NA 72.73 81.82 NA NA 94.12 NA NA 80.00 NA 100.00 85.71 NA 94.44 83.33 88.89 NA NA NA NA 76.47 NA 70.00 100.00 NA NA 90.91 NA NA NA K alternative_donor CSN5 chr3R + chr3R_12296786_12296850;chr3R_12296683_12296850 chr3R_12296792_12296850 chr3R_12296851_12297070;chr3R_12296215_12296682 68.29 77.78 73.81 72.31 71.43 70.73 72.46 78.12 68.29 70.37 67.65 68.75 72.97 66.67 61.22 70.59 65.85 67.35 61.70 63.16 65.71 70.00 70.27 63.64 66.67 58.82 74.24 82.14 64.58 60.53 63.27 69.23 65.91 69.12 68.29 62.50 68.25 66.67 67.19 71.05 63.41 70.73 74.19 81.63 72.00 63.38 67.09 73.81 73.97 70.67 73.61 79.55 66.07 65.08 66.04 64.71 66.67 71.19 K jcn_only_AD Nipped-B,I_chr2R_580301_580515,I_chr2R_580453_580515,I_chr2R_580989_582555,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_580301_580367 chr2R_580301_580358 chr2R_580236_580300;chr2R_580368_580452 24.57 NA NA NA NA NA 26.23 24.14 21.74 NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 15.38 NA NA NA 25.00 NA NA 26.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10065344,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10064983_10065389 chr2R_10064983_10065365 chr2R_10064680_10064982;chr2R_10065390_10065444 97.96 97.22 100.00 97.56 96.15 100.00 96.43 100.00 94.74 100.00 100.00 98.31 97.14 100.00 97.62 98.33 100.00 100.00 100.00 98.91 100.00 94.44 98.46 97.96 89.47 100.00 98.00 91.67 97.50 100.00 97.37 96.43 92.59 100.00 96.97 100.00 97.14 100.00 98.51 98.61 96.00 95.65 96.43 98.00 88.24 100.00 91.18 98.11 97.18 100.00 98.08 97.50 96.97 100.00 97.78 96.88 96.15 97.73 K alternative_acceptor CaMKII,I_chr4_1059085_1060638,I_chr4_1059085_1065781,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1059061_1060638;chr4_1059085_1060638 chr4_1059064_1060638 chr4_1060639_1060704;chr4_1059054_1059060 29.41 NA NA 38.46 NA NA 46.15 20.00 34.78 NA NA 27.78 NA NA NA 23.53 NA NA 29.41 13.04 NA NA 30.77 NA NA NA NA NA NA NA 29.41 NA NA 26.32 NA NA NA NA NA 35.71 NA 25.00 NA NA NA NA NA NA 32.14 NA NA NA NA NA 20.00 NA NA 31.25 K intron_retention Aldh chr2L + chr2L_9387891_9389828 chr2L_9387890_9387891;chr2L_9389828_9389829 chr2L_9387389_9387890;chr2L_9389829_9389977 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.34 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 K intron_retention inaD,I_chr2R_18744912_18744978 chr2R - chr2R_18745070_18745123 chr2R_18745069_18745070;chr2R_18745123_18745124 chr2R_18744979_18745069;chr2R_18745124_18745223 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA K alternative_acceptor Cip4,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4324448_4324921 chr3L_4324451_4324921 chr3L_4324922_4324996;chr3L_4324284_4324447 15.38 16.25 15.46 14.39 21.28 11.43 21.19 12.33 17.22 15.79 15.15 14.06 14.71 10.77 20.24 13.27 15.25 13.51 17.74 13.41 11.63 9.43 19.09 20.59 22.22 14.00 25.81 33.33 7.69 16.67 16.67 14.63 10.67 14.16 12.77 12.79 14.29 10.77 16.07 16.38 11.11 15.38 17.86 20.90 7.02 19.30 16.00 14.04 18.18 17.95 16.67 16.00 12.96 15.91 16.67 8.33 15.62 12.77 K intron_retention Hcs,I_chr3R_1303481_1304607 chr3R + chr3R_1304765_1304839 chr3R_1304764_1304765;chr3R_1304839_1304840 chr3R_1304626_1304764;chr3R_1304840_1305043 0.00 NA NA 0.00 NA NA NA 0.00 12.00 NA NA 3.57 NA NA NA 28.57 NA NA NA 6.45 NA NA 0.00 6.25 NA NA 0.00 NA NA NA 0.00 NA NA 11.11 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA 8.33 0.00 0.00 NA NA NA 0.00 NA 0.00 NA K intron_retention I_chr3R_16141663_16144698,CG5077,I_chr3R_16147605_16147670 chr3R + chr3R_16145433_16145490 chr3R_16145432_16145433;chr3R_16145490_16145491 chr3R_16145290_16145432;chr3R_16145491_16145722 0.48 0.64 0.00 0.00 1.72 0.00 0.31 0.43 0.36 0.00 0.00 0.81 0.85 0.80 0.95 0.44 0.00 0.00 0.00 0.34 0.88 1.25 0.76 0.99 0.47 0.31 2.60 2.00 0.48 1.01 0.00 0.48 0.64 1.14 1.58 0.66 0.25 0.27 0.22 0.76 0.55 0.58 0.00 0.53 0.40 0.50 0.76 0.81 0.98 0.00 1.12 0.34 0.00 0.00 0.27 0.00 0.39 0.91 K intron_retention Atpalpha,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16791762_16792119 chr3R_16791761_16791762;chr3R_16792119_16792120 chr3R_16789980_16791761;chr3R_16792120_16792335 0.00 0.00 0.00 0.50 0.00 0.00 0.18 0.00 0.10 0.00 0.00 0.00 0.52 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.17 0.00 0.00 0.31 0.48 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.17 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention sqh,I_chrX_6118043_6119039,I_chrX_6118150_6118725,I_chrX_6118150_6118729,I_chrX_6118150_6118790,I_chrX_6118150_6118800 chrX - chrX_6118150_6119039 chrX_6118149_6118150;chrX_6119039_6119040 chrX_6118050_6118149;chrX_6119040_6119139 0.57 0.42 1.64 0.79 0.87 0.56 0.39 0.84 0.95 0.57 0.57 0.69 0.00 1.22 0.80 0.43 0.66 0.32 0.99 0.58 1.23 0.26 0.21 1.13 0.87 0.51 0.43 0.25 1.12 0.35 0.41 1.00 0.82 0.52 0.29 0.00 0.33 0.00 0.59 0.68 0.00 0.95 0.00 0.98 0.83 0.74 0.49 0.41 0.71 0.36 0.42 1.26 0.49 0.45 1.13 0.23 0.34 0.73 K intron_retention CG3609,I_chr2L_2373706_2374488,RI_chr2L_2373723_2374295 chr2L - chr2L_2373723_2373935 chr2L_2373722_2373723;chr2L_2373935_2373936 chr2L_2373623_2373722;chr2L_2373936_2374004 46.15 NA NA NA NA NA 90.00 NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA 90.91 36.36 NA NA NA NA 83.33 46.15 NA NA NA NA NA NA NA NA NA NA 57.14 46.15 NA NA NA NA 33.33 NA NA NA 26.67 NA NA NA NA NA NA NA 30.77 K alternative_donor ferrochelatase chr3R - chr3R_27636663_27636769 chr3R_27636663_27636721 chr3R_27636594_27636662;chr3R_27636770_27636835 100.00 99.25 100.00 100.00 100.00 100.00 100.00 99.17 100.00 98.84 98.97 100.00 100.00 98.25 100.00 100.00 100.00 98.85 100.00 100.00 100.00 99.58 99.56 99.48 100.00 100.00 99.59 99.62 99.53 99.37 99.19 100.00 99.45 100.00 99.07 100.00 99.58 99.37 99.60 99.57 99.41 99.37 100.00 100.00 98.83 100.00 99.38 100.00 98.44 100.00 100.00 100.00 100.00 99.37 98.92 100.00 100.00 100.00 K alternative_last_exon CG34383,RI_chr3R_9587490_9588422,RI_chr3R_9587500_9588422 chr3R + chr3R_9586085_9587029;chr3R_9586085_9586407 chr3R_9586085_9588422 chr3R_9587030_9587536;chr3R_9586408_9586663 chr3R_9588423_9590485 chr3R_9586009_9586084 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K intron_retention dnk chr3R + chr3R_14806917_14807273 chr3R_14806916_14806917;chr3R_14807273_14807274 chr3R_14806759_14806916;chr3R_14807274_14807625 82.14 57.50 79.31 70.59 94.29 81.97 69.23 75.71 78.72 90.28 76.92 76.64 75.68 82.93 84.21 75.64 74.19 78.05 76.47 89.31 76.32 83.72 80.00 78.87 75.61 87.18 79.69 57.14 89.71 82.14 77.55 85.48 86.76 81.01 88.52 87.23 89.71 73.91 86.75 90.83 87.10 87.10 87.18 73.33 88.89 89.66 88.16 92.16 81.02 79.01 82.61 86.21 90.79 84.29 88.52 77.78 67.65 90.84 K intron_retention RI_chrX_788339_821889,CG3711 chrX - chrX_819182_819250 chrX_819181_819182;chrX_819250_819251 chrX_819006_819181;chrX_819251_820666 0.00 NA 0.00 17.65 NA NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG1399,I_chr2R_3574133_3574191 chr2R - chr2R_3565240_3565502;chr2R_3565240_3565323;chr2R_3565240_3565310;chr2R_3565240_3566074;chr2R_3565240_3565374 chr2R_3565240_3565403 chr2R_3564840_3565239 10.00 3.03 7.69 10.00 12.90 25.00 4.62 19.57 12.12 4.08 3.77 21.95 0.00 12.90 5.41 19.44 10.00 13.89 17.95 7.69 9.43 2.30 7.50 2.00 11.11 11.54 6.67 8.57 17.86 16.95 14.04 22.22 20.29 17.31 15.79 34.62 5.66 3.03 6.52 8.33 11.86 7.27 7.41 4.44 23.08 10.17 2.38 17.65 9.09 8.70 4.92 2.56 14.81 7.32 13.64 17.50 7.14 25.68 K intron_retention CG30187,F_chr2R_18805721_18805778,I_chr2R_18820842_18820922 chr2R - chr2R_18805721_18805782 chr2R_18805720_18805721;chr2R_18805782_18805783 chr2R_18805621_18805720;chr2R_18805783_18805878 1.00 4.49 0.00 1.35 0.00 3.08 0.00 1.71 1.45 0.00 0.00 1.97 1.94 1.15 1.83 2.80 0.00 1.00 3.48 1.64 0.00 0.00 0.00 0.00 0.00 0.00 1.14 3.85 0.00 0.00 1.23 0.00 4.44 2.69 0.00 0.00 2.06 0.00 0.00 2.15 0.00 2.69 2.60 0.00 6.25 1.37 0.00 2.78 1.54 1.77 0.00 1.00 0.00 0.00 0.81 0.00 2.35 2.63 K intron_retention hang,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16326745_16327197 chrX_16326744_16326745;chrX_16327197_16327198 chrX_16324959_16326744;chrX_16327198_16328171 0.00 1.56 0.00 3.28 1.82 0.00 0.00 2.86 2.86 2.67 0.00 2.00 3.28 0.00 1.47 0.00 0.00 0.00 1.59 2.76 0.00 0.72 0.00 1.45 0.00 0.00 4.05 4.00 3.64 0.00 0.00 0.00 1.15 1.20 0.00 0.00 1.39 0.00 0.99 0.93 0.00 0.81 0.00 3.19 0.00 0.00 0.00 5.56 3.64 0.00 0.00 1.82 0.00 0.00 0.00 0.00 3.03 0.00 K alternative_acceptor Su(dx),RE_chr2L_2038009_2039919,CG31672 chr2L + chr2L_2042570_2042665 chr2L_2042570_2042652 chr2L_2041647_2042569;chr2L_2042666_2042851 100.00 100.00 100.00 100.00 100.00 100.00 98.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.21 100.00 99.26 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 99.43 100.00 100.00 100.00 100.00 100.00 98.61 99.31 100.00 100.00 98.08 100.00 99.15 99.07 100.00 99.47 99.04 100.00 98.28 100.00 100.00 100.00 100.00 100.00 100.00 99.46 K alternative_acceptor psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6501632_6502058;chr2R_6501632_6502052 chr2R_6501632_6502037 chr2R_6501448_6501631;chr2R_6502059_6503753 92.31 94.12 91.18 85.37 92.50 96.15 80.65 94.44 86.21 87.50 95.83 90.41 92.31 93.33 88.37 96.15 92.59 96.55 95.65 89.16 96.00 91.14 92.65 90.20 91.67 83.33 94.29 90.32 97.50 95.08 92.31 95.45 87.72 95.74 90.32 91.84 93.64 90.62 96.15 92.86 90.91 91.03 92.00 95.45 87.18 97.14 100.00 98.04 91.53 90.91 90.16 96.97 95.83 92.31 94.12 94.29 87.88 83.78 K alternative_donor uzip,I_chr2R_20916008_20916468 chr2R + chr2R_20899732_20900155;chr2R_20899701_20900155 chr2R_20899685_20900155 chr2R_20900156_20900229;chr2R_20899603_20899684 2.63 5.00 0.00 3.45 6.67 4.35 5.00 2.70 2.56 6.67 0.00 2.70 5.56 5.56 4.76 2.50 0.00 5.00 3.33 3.92 0.00 3.85 2.63 0.00 0.00 4.76 4.76 0.00 0.00 0.00 0.00 0.00 2.50 2.33 3.33 0.00 0.00 0.00 7.69 3.45 5.26 4.35 12.50 0.00 5.88 0.00 0.00 3.45 2.44 0.00 0.00 3.57 0.00 0.00 2.94 3.70 0.00 2.38 K intron_retention CG32066 chr3L - chr3L_10652769_10653882 chr3L_10652768_10652769;chr3L_10653882_10653883 chr3L_10652465_10652768;chr3L_10653883_10654020 4.55 0.00 0.00 4.95 3.23 5.71 2.73 3.70 5.19 NA 0.00 0.00 0.00 2.86 2.56 6.25 7.84 2.56 3.77 5.00 4.65 15.38 6.25 5.00 8.00 6.25 10.71 14.29 NA 10.00 4.44 12.50 15.38 4.55 0.00 15.38 0.00 NA NA 5.56 5.56 2.74 2.27 0.00 NA 0.00 0.00 14.29 2.35 2.70 7.69 6.45 6.25 NA 0.00 0.00 0.00 5.88 K intron_retention Scsalpha chr3L + chr3L_3817722_3817783 chr3L_3817721_3817722;chr3L_3817783_3817784 chr3L_3817437_3817721;chr3L_3817784_3818383 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 K intron_retention CG8029,I_chr2R_5095165_5095256 chr2R + chr2R_5095356_5095418 chr2R_5095355_5095356;chr2R_5095418_5095419 chr2R_5095257_5095355;chr2R_5095419_5095521 0.00 0.00 0.00 0.52 0.00 0.00 0.52 0.40 0.30 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.40 0.00 2.73 0.00 0.00 0.93 0.00 1.90 1.01 4.12 0.00 0.00 0.98 0.39 0.00 0.00 0.00 0.87 1.03 0.74 1.64 2.35 0.00 0.00 0.53 0.00 2.01 0.00 0.00 0.77 0.74 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 K intron_retention Aldh-III,RE_chr2R_3355332_3355720,I_chr2R_3356541_3356614,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3355332_3355926 chr2R_3355331_3355332;chr2R_3355926_3355927 chr2R_3355296_3355331;chr2R_3355927_3355932 10.00 9.43 11.88 20.56 10.84 11.69 18.75 16.07 14.74 17.65 10.00 7.10 21.57 10.98 17.00 12.62 10.00 14.89 12.96 9.39 9.72 11.90 9.01 9.01 14.81 14.55 12.79 8.57 10.53 12.24 7.41 5.63 7.14 10.34 12.90 8.00 4.72 9.64 5.51 11.30 2.27 8.28 14.08 4.71 2.41 6.56 5.74 13.56 13.95 9.00 7.14 7.69 10.26 9.82 9.17 9.71 7.55 10.67 K jcn_only_AD I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545799_17545855;chr2R_17545686_17545855;chr2R_17545615_17545855 chr2R_17545781_17545855 chr2R_17545856_17545985;chr2R_17545613_17545614 22.34 NA NA 18.18 19.05 15.62 40.91 26.92 25.00 NA 31.82 25.00 NA NA 18.52 21.74 NA 32.35 NA 21.95 27.27 NA NA NA NA NA NA NA NA NA NA NA NA 21.88 NA NA NA NA NA NA NA 13.46 NA NA 22.73 NA NA NA 26.47 NA NA NA NA NA 5.41 NA NA NA K intron_retention CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806425_22807254 chr3R_22806424_22806425;chr3R_22807254_22807255 chr3R_22806325_22806424;chr3R_22807255_22807473 40.48 39.13 37.72 41.74 43.08 33.55 34.70 36.01 34.28 55.00 39.64 56.11 33.73 28.95 41.36 31.66 41.67 32.37 37.56 29.80 37.50 40.00 36.11 41.25 43.08 34.78 55.10 73.33 47.22 43.59 37.34 43.28 56.00 34.56 40.82 47.83 40.62 28.21 51.02 53.57 42.62 31.14 29.94 45.90 42.55 51.69 41.43 53.77 39.00 53.33 40.48 40.98 27.12 45.45 34.12 39.29 36.76 36.13 K intron_retention cno,I_chr3R_999718_999986,I_chr3R_999737_999777,I_chr3R_1003608_1005580,noncoding_14652,F_chr3R_1006551_1006778,I_chr3R_1006714_1006778 chr3R - chr3R_1003608_1004422 chr3R_1003607_1003608;chr3R_1004422_1004423 chr3R_1003508_1003607;chr3R_1004423_1004478 81.65 NA NA NA NA NA 81.82 NA 88.89 NA NA 88.89 NA NA NA NA NA NA NA 81.48 NA 50.00 NA NA NA NA NA 88.89 64.29 87.50 NA 88.89 62.50 88.89 33.33 NA NA NA 70.00 60.00 NA 81.82 NA 60.00 NA NA NA 64.00 90.00 NA NA NA NA NA NA NA NA NA K intron_retention Gapdh2,I_chrX_15762280_15762350 chrX + chrX_15762277_15762350 chrX_15762276_15762277;chrX_15762350_15762351 chrX_15762180_15762276;chrX_15762351_15762450 0.00 2.06 0.00 0.53 0.00 0.00 1.22 0.19 0.90 0.00 0.00 0.00 0.00 1.68 0.30 0.00 0.60 0.00 0.43 1.08 0.00 0.00 6.45 0.00 0.00 0.00 43.14 41.38 10.42 0.00 0.62 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.76 0.00 0.19 0.00 1.41 0.00 0.00 4.76 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention oho23B,I_chr2L_2856176_2856244,I_chr2L_2856573_2856630,RI_chr2L_2856673_2856772 chr2L + chr2L_2856288_2856376 chr2L_2856287_2856288;chr2L_2856376_2856377 chr2L_2856279_2856287;chr2L_2856377_2856568 54.55 NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA 54.55 NA NA NA NA NA NA 68.42 80.95 94.29 NA NA NA NA NA NA NA 53.85 NA NA 57.14 NA NA NA NA 50.00 73.33 NA NA NA NA NA NA 42.86 NA NA 38.46 28.57 86.67 K intron_retention RI_chrX_7172561_7252693,CG1677 chrX - chrX_7175783_7175855 chrX_7175782_7175783;chrX_7175855_7175856 chrX_7175137_7175782;chrX_7175856_7175993 0.00 2.17 0.00 0.00 0.00 0.00 0.00 3.33 1.03 0.00 0.00 0.00 0.00 2.70 0.00 0.00 2.94 0.00 0.00 0.00 0.00 5.77 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 2.13 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 6.90 0.00 0.00 0.00 0.00 K alternative_donor Myo95E,F_chr3R_19985049_19985112,F_chr3R_19985127_19985197 chr3R - chr3R_19985049_19985197 chr3R_19985049_19985112 chr3R_19985027_19985048;chr3R_19985198_19985212 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG32594 chrX + chrX_14918988_14924618 chrX_14918987_14918988;chrX_14924618_14924619 chrX_14918583_14918987;chrX_14924619_14924880 0.00 0.00 0.00 0.00 0.00 0.00 1.50 0.00 0.45 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 1.35 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 1.27 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 K alternative_acceptor Galpha49B,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500390_8501648;chr2R_8500390_8501759 chr2R_8500390_8501071 chr2R_8500380_8500389;chr2R_8501760_8501850 85.71 83.33 87.50 86.96 NA 77.78 93.33 91.43 95.35 85.71 83.33 90.57 88.89 84.00 100.00 93.33 88.89 81.82 85.71 86.96 90.91 81.82 90.00 76.92 83.33 83.33 86.67 83.33 71.43 90.00 88.89 100.00 77.78 84.62 80.00 84.62 85.71 66.67 77.78 87.50 75.00 92.86 85.00 84.62 66.67 76.47 83.33 90.00 82.05 85.71 89.47 92.31 100.00 100.00 93.75 85.71 85.71 81.82 K jcn_only_AD CG32048 chr3L + chr3L_9574814_9581339 chr3L_9581147_9581339 chr3L_9581340_9581514 2.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG9674,I_chr3L_16793055_16793171,I_chr3L_16793055_16793190,I_chr3L_16793055_16800660 chr3L - chr3L_16793055_16793200;chr3L_16793055_16793173 chr3L_16793055_16793196 chr3L_16792955_16793054;chr3L_16793201_16793268 3.85 NA NA 0.00 NA NA 5.26 6.25 10.20 NA 0.00 NA NA NA NA 0.00 NA NA 4.35 6.06 NA 4.55 0.00 NA NA NA NA 3.85 3.23 NA 6.45 NA 3.70 3.85 5.00 NA NA NA NA 4.55 NA 0.00 NA NA NA NA NA 3.33 3.70 NA NA NA NA NA NA NA NA NA K jcn_only_AD kar,I_chr3R_8510245_8510617,I_chr3R_8510258_8513437,I_chr3R_8514177_8514930 chr3R - chr3R_8510245_8510617;chr3R_8510245_8510655 chr3R_8510245_8513437 chr3R_8510234_8510244;chr3R_8513438_8513461 100.00 NA NA NA NA NA NA NA NA 95.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG33170,RI_chr3L_22859073_22860499,I_chr3L_22859135_22860499 chr3L + chr3L_22860419_22860499;chr3L_22859061_22860499;chr3L_22859135_22860499 chr3L_22859073_22860499 chr3L_22860500_22860559 4.76 3.61 3.75 0.68 4.65 4.55 5.49 4.76 4.22 14.00 0.00 4.76 2.38 5.81 3.09 6.29 1.37 4.62 8.05 5.37 3.77 1.85 4.90 2.68 6.12 8.33 7.89 15.38 7.06 3.53 3.19 10.00 8.85 7.14 1.56 5.88 2.86 7.02 5.17 1.94 7.18 2.22 4.35 1.42 6.43 3.26 5.05 6.34 5.52 6.90 10.59 6.52 8.33 6.17 2.88 4.29 4.55 4.72 K cassette CG31650,I_chr2L_5041540_5041687,RI_chr2L_5041540_5041697,RI_chr2L_5041540_5042490,I_chr2L_5042888_5042983,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5041540_5042490 chr2L_5041540_5041688;chr2L_5041837_5042490 chr2L_5041689_5041836 chr2L_5041440_5041539;chr2L_5042491_5042590 99.12 98.84 98.84 86.29 100.00 100.00 98.45 100.00 99.47 97.62 100.00 99.36 100.00 98.73 100.00 99.24 100.00 98.70 100.00 99.43 100.00 97.30 98.91 100.00 98.04 97.20 100.00 100.00 96.00 100.00 99.12 100.00 97.56 100.00 98.46 98.15 98.90 98.61 97.37 98.85 98.51 99.41 98.55 100.00 98.44 100.00 98.73 100.00 99.41 98.68 98.84 100.00 97.92 98.28 100.00 100.00 98.80 100.00 K jcn_only_AD pelo,I_chr2L_9706747_9706980,I_chr2L_9707821_9708144,I_chr2L_9707891_9708144,I_chr2L_9708081_9708144 chr2L + chr2L_9707891_9708144;chr2L_9708081_9708144;chr2L_9707821_9708144 chr2L_9706747_9708144 chr2L_9708145_9708244;chr2L_9706647_9706746 97.62 98.48 96.36 98.23 96.00 97.62 98.48 97.98 99.21 98.25 89.58 97.30 100.00 98.57 100.00 100.00 97.92 92.86 100.00 94.29 97.87 93.55 97.73 97.78 96.43 98.59 95.96 95.31 96.34 95.38 98.28 96.63 100.00 95.00 98.61 95.24 96.39 96.61 100.00 94.07 94.39 99.04 97.50 97.18 95.45 98.29 98.70 95.97 96.36 96.55 96.88 98.21 97.70 98.46 97.70 97.62 98.11 97.32 K jcn_only_AD Dbp80 chr3LHet + chr3LHet_2543798_2543887 chr3LHet_2543829_2543887 chr3LHet_2543888_2543917;chr3LHet_2543765_2543797 95.45 100.00 NA 88.57 NA 100.00 91.30 90.91 94.00 NA NA 91.43 90.48 100.00 NA 95.45 100.00 95.83 96.30 NA NA NA NA NA NA NA 100.00 NA NA NA 92.59 NA NA 96.88 NA NA NA NA NA 96.00 NA 87.88 NA 100.00 NA NA 94.83 NA 93.48 NA 100.00 NA NA NA 100.00 89.29 85.19 NA K intron_retention I_chrX_15680663_15680821,Rhp chrX + chrX_15687278_15687341 chrX_15687277_15687278;chrX_15687341_15687342 chrX_15687125_15687277;chrX_15687342_15687658 9.09 13.33 7.69 26.32 NA 0.00 28.57 NA 4.76 22.22 0.00 7.41 NA 0.00 15.79 6.67 NA NA 7.69 8.11 NA 11.11 15.00 10.00 16.67 NA 12.00 16.00 21.21 9.09 13.33 10.71 10.00 0.00 NA 18.75 NA 7.14 0.00 0.00 26.47 6.67 NA NA 0.00 9.09 9.09 8.33 9.09 17.24 0.00 NA NA 7.69 0.00 15.38 2.86 10.00 K intron_retention klett chrX - chrX_21499782_21499874 chrX_21499781_21499782;chrX_21499874_21499875 chrX_21499389_21499781;chrX_21499875_21499937 22.58 40.91 21.05 40.00 53.33 31.82 19.05 38.10 30.95 15.38 20.00 19.44 30.00 33.33 31.82 29.41 27.27 40.00 31.58 25.71 NA 18.52 20.75 25.81 21.74 20.00 21.95 23.33 21.74 9.38 11.63 NA 16.13 24.14 28.57 39.29 16.67 20.51 18.18 19.70 20.00 25.00 23.81 18.18 19.05 21.05 21.74 16.67 28.21 22.58 23.91 20.00 28.00 28.57 40.00 22.58 23.81 20.69 K intron_retention CG32039 chr3L + chr3L_9352517_9352575 chr3L_9352516_9352517;chr3L_9352575_9352576 chr3L_9352477_9352516;chr3L_9352576_9352963 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 7.32 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor mbf1,RI_chr3L_16567888_16567952,RI_chr3L_16568077_16568816 chr3L + chr3L_16567770_16567952;chr3L_16567853_16567952 chr3L_16567888_16567952 chr3L_16567953_16568052;chr3L_16567701_16567769 3.39 3.70 1.59 13.04 2.78 4.65 8.13 5.43 2.26 0.00 1.67 4.49 3.77 3.70 7.81 3.45 5.00 1.89 1.82 4.13 3.45 4.69 1.35 2.04 8.11 6.52 9.80 7.69 9.52 2.38 2.80 3.23 4.84 6.52 3.03 2.44 2.10 3.12 2.70 3.45 7.50 4.13 4.00 2.33 3.39 1.72 1.89 5.13 4.46 1.39 2.38 1.75 1.96 0.00 3.03 3.49 2.86 2.63 K intron_retention 14-3-3epsilon,I_chr3R_14068632_14073155,RI_chr3R_14074062_14074138,I_chr3R_14074016_14074138 chr3R + chr3R_14073874_14073954 chr3R_14073873_14073874;chr3R_14073954_14073955 chr3R_14073693_14073873;chr3R_14073955_14074015 30.14 20.00 30.75 35.29 31.37 32.38 31.54 38.08 28.97 27.31 33.33 30.45 29.68 29.19 32.92 30.78 36.14 37.16 35.86 31.62 25.93 25.13 15.46 12.43 22.02 40.77 8.36 17.06 30.14 22.97 33.50 31.11 32.51 35.06 20.55 34.07 23.12 16.71 13.77 23.87 30.31 31.18 33.66 17.24 31.02 25.59 15.73 41.52 31.91 15.73 13.84 22.49 13.14 14.91 35.91 18.66 13.19 41.05 K intron_retention Adar,RI_chrX_1668256_1669638,RI_chrX_1668256_1669682,I_chrX_1668256_1682696,I_chrX_1674594_1674717 chrX + chrX_1668256_1669731 chrX_1668255_1668256;chrX_1669731_1669732 chrX_1668156_1668255;chrX_1669732_1669738 54.17 NA 57.14 39.29 28.57 77.78 54.17 50.00 63.64 NA NA 68.18 75.00 33.33 63.64 59.09 46.15 NA 52.63 66.67 NA NA 22.22 NA NA NA 54.55 NA NA NA 46.15 NA NA 61.54 NA 53.85 NA NA 33.33 46.15 NA 65.00 NA NA NA NA NA 60.00 60.71 NA NA 35.71 NA NA 47.06 NA NA NA K alternative_acceptor Pect,I_chr2L_13207997_13208109,E_chr2L_13208285_13210076 chr2L + chr2L_13208778_13209435;chr2L_13208778_13209492;chr2L_13208778_13209501 chr2L_13208778_13209471 chr2L_13208665_13208777;chr2L_13209502_13209599 72.73 76.39 76.98 53.08 65.52 72.17 85.81 73.80 71.26 76.00 82.61 70.18 22.31 70.68 72.34 75.96 64.29 78.85 70.08 72.11 76.53 62.62 73.21 71.07 67.74 71.43 75.36 60.64 69.44 69.67 69.75 72.37 66.02 76.65 66.95 86.14 74.81 72.81 76.92 77.33 68.89 74.40 71.43 72.73 74.70 72.09 74.19 73.68 76.19 71.17 68.50 71.65 85.00 75.22 73.20 73.88 78.77 78.70 K jcn_only_AD Cep97 chr2L + chr2L_3870555_3870621 chr2L_3870559_3870621 chr2L_3870622_3871425;chr2L_3870127_3870554 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.12 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Hcs,I_chr3R_1303481_1304607 chr3R + chr3R_1303481_1304625 chr3R_1303480_1303481;chr3R_1304625_1304626 chr3R_1303381_1303480;chr3R_1304626_1304707 41.67 NA NA NA NA NA NA NA 39.13 NA NA 36.84 NA NA NA NA NA NA NA 41.67 NA 69.23 32.00 45.45 NA NA 40.00 NA NA 46.15 NA NA 66.67 46.67 NA NA 33.33 33.33 27.78 57.14 NA 40.00 NA NA NA NA NA NA 45.45 41.67 50.00 41.67 NA NA NA NA NA NA K intron_retention CG18177,I_chr3L_9723741_9723833 chr3L + chr3L_9721250_9721312 chr3L_9721249_9721250;chr3L_9721312_9721313 chr3L_9721085_9721249;chr3L_9721313_9721317 57.14 56.52 66.67 53.12 62.50 71.43 73.08 57.14 61.54 66.67 61.90 60.00 53.85 71.43 47.62 57.69 50.00 40.00 53.85 47.62 42.86 92.59 61.76 55.00 66.67 73.68 48.48 50.00 61.11 54.55 69.23 46.15 44.44 50.00 64.29 61.11 40.62 58.82 43.33 60.87 81.82 58.33 61.54 50.00 63.16 50.00 71.43 58.82 53.57 43.48 47.83 61.54 42.11 61.54 50.00 50.00 52.63 47.37 K jcn_only_AD oho23B,I_chr2L_2856176_2856244,I_chr2L_2856573_2856630,RI_chr2L_2856673_2856772 chr2L + chr2L_2856288_2856376 chr2L_2856306_2856376 chr2L_2856377_2856568;chr2L_2856279_2856287 99.95 99.97 99.97 99.87 99.94 99.91 99.92 99.91 99.95 99.95 99.94 99.93 99.94 99.95 99.97 100.00 99.84 99.97 99.98 99.96 99.99 100.00 99.96 99.96 99.95 99.91 99.93 99.92 99.97 99.92 100.00 99.89 99.94 99.94 99.91 99.97 99.95 99.95 99.93 99.94 99.95 99.97 99.90 99.95 99.92 99.95 99.96 99.97 99.94 99.95 99.95 99.96 99.93 99.93 99.95 99.94 99.93 99.97 K alternative_acceptor CG34348 chrX + chrX_11234779_11237282 chrX_11234779_11237278 chrX_11234640_11234778;chrX_11237283_11237945 100.00 100.00 87.50 NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 NA 92.86 NA NA 90.00 NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 92.31 100.00 100.00 100.00 100.00 92.86 NA 100.00 100.00 100.00 93.33 100.00 100.00 K intron_retention ZC3H3 chr3L - chr3L_8501336_8501432 chr3L_8501335_8501336;chr3L_8501432_8501433 chr3L_8501140_8501335;chr3L_8501433_8501978 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA 0.00 0.00 16.67 NA NA 11.11 NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA K alternative_acceptor Fs(2)Ket,I_chr2L_20734991_20735252,I_chr2L_20735091_20735305,I_chr2L_20735170_20735252,I_chr2L_20738976_20749527 chr2L + chr2L_20735091_20735305 chr2L_20735091_20735252 chr2L_20735070_20735090;chr2L_20735306_20735352 100.00 100.00 100.00 98.00 100.00 96.67 98.25 100.00 98.82 100.00 100.00 98.77 100.00 100.00 100.00 100.00 97.56 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 NA 100.00 98.55 100.00 100.00 93.75 94.44 100.00 97.06 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 98.67 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA RI_chr3L_19787260_19787323,Ir76a,RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19795029_19795090;chr3L_19795029_19795077 chr3L_19795029_19795086 chr3L_19795020_19795028;chr3L_19795091_19795214 4.55 NA NA NA NA NA NA 9.09 4.55 NA NA NA NA NA NA NA NA NA NA 4.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.85 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor Nnf1b,I_chr2L_810759_810816,KH1 chr2L + chr2L_810759_810816 chr2L_810759_810808 chr2L_810691_810758;chr2L_810817_810876 92.86 100.00 95.00 100.00 91.67 100.00 87.50 88.89 96.97 NA 100.00 95.00 90.91 94.74 95.83 91.67 92.31 92.86 94.12 90.70 100.00 87.50 95.45 95.83 100.00 92.86 94.44 100.00 90.00 NA 70.37 91.67 87.50 100.00 100.00 91.67 84.62 92.86 95.65 90.00 91.67 96.97 91.67 91.67 91.67 90.48 89.29 77.78 97.06 88.24 96.15 92.86 94.44 93.75 100.00 94.12 96.67 87.50 K alternative_donor eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341925_20342041;chr3L_20341636_20342041;chr3L_20341509_20342041;chr3L_20341865_20342041;chr3L_20341522_20342041;chr3L_20341751_20342041;chr3L_20341530_20342041;chr3L_20341629_20342041;chr3L_20341598_20342041;chr3L_20341759_20342041 chr3L_20341486_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 66.67 70.59 62.96 76.36 72.00 70.00 42.42 83.10 53.03 72.73 75.00 59.52 47.37 72.22 80.56 41.67 75.86 70.83 62.16 56.90 69.23 66.67 55.56 59.09 73.68 57.58 53.85 50.00 62.50 66.67 71.79 62.50 66.67 69.35 66.67 57.14 57.14 58.33 57.14 37.78 69.23 71.60 58.33 72.73 73.68 68.18 66.67 42.11 62.67 56.25 53.85 60.87 64.29 50.00 68.75 73.33 71.43 71.43 K intron_retention Spase18-21,I_chr3R_2483820_2484724 chr3R + chr3R_2484150_2484724 chr3R_2484149_2484150;chr3R_2484724_2484725 chr3R_2483890_2484149;chr3R_2484725_2484824 1.27 1.30 0.43 1.03 0.96 0.47 2.19 1.36 1.12 0.00 0.80 0.92 0.97 1.07 1.06 2.03 1.21 2.45 0.00 0.86 1.03 1.41 1.69 1.40 2.16 0.83 1.92 2.81 2.95 0.65 1.57 0.75 1.31 0.94 2.30 3.80 1.27 1.67 1.30 0.81 0.86 1.32 1.07 1.54 0.90 1.99 1.44 0.93 1.01 2.45 1.82 3.21 0.98 1.98 0.76 1.69 3.43 0.94 K intron_retention aralar1,I_chr3R_26274931_26275096 chr3R - chr3R_26274292_26274356 chr3R_26274291_26274292;chr3R_26274356_26274357 chr3R_26274068_26274291;chr3R_26274357_26274551 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11033,I_chr3R_4879198_4879257,I_chr3R_4882567_4883651 chr3R + chr3R_4879198_4879257 chr3R_4879197_4879198;chr3R_4879257_4879258 chr3R_4879183_4879197;chr3R_4879258_4879357 63.64 NA NA 78.57 NA NA 63.64 66.67 47.83 NA NA 66.67 41.67 NA NA NA NA 88.89 60.00 64.29 NA 71.43 50.00 NA NA 84.62 88.89 72.73 78.95 50.00 NA NA 50.00 69.23 NA 100.00 63.64 NA 63.64 36.36 NA 53.85 NA 58.33 NA 40.00 NA 33.33 58.82 NA NA NA NA NA 57.14 NA NA NA K alternative_last_exon CG8709,I_chr2R_4026143_4026205,I_chr2R_4027128_4027182,I_chr2R_4027682_4027747,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4026308_4026442;chr2R_4025188_4026442 chr2R_4026098_4026442 chr2R_4024423_4025187 chr2R_4025458_4026097 chr2R_4026443_4026546 12.33 10.53 12.90 6.86 13.73 13.11 9.26 10.38 9.87 12.50 14.63 12.20 12.77 9.38 13.85 22.86 11.54 9.62 10.00 13.04 16.67 17.59 13.76 11.11 11.29 8.77 13.00 20.63 22.47 12.33 10.45 12.28 16.98 13.21 10.17 9.52 10.99 7.69 14.44 14.43 14.08 11.28 8.33 9.64 14.81 12.38 12.64 11.11 10.71 13.85 10.28 10.71 12.50 10.96 12.33 13.16 15.05 18.48 K jcn_only_AD Bet1,noncoding_13463 chr3L + chr3L_19254708_19254812 chr3L_19254756_19254812 chr3L_19254813_19255421;chr3L_19254489_19254707 26.87 28.24 13.41 22.92 30.43 26.87 36.15 41.18 22.40 21.79 30.51 26.19 30.00 26.79 30.85 20.00 25.93 27.12 29.82 24.71 32.39 20.16 20.80 25.98 37.97 20.93 29.52 23.26 28.57 35.53 29.63 24.07 31.15 26.04 33.33 18.18 26.04 24.44 27.35 25.31 39.60 25.78 22.22 19.32 29.46 31.48 33.01 27.66 19.66 19.66 26.42 23.26 28.40 32.71 27.96 30.00 16.83 31.71 K intron_retention Moe,I_chrX_8774434_8791759 chrX - chrX_8768435_8768535 chrX_8768434_8768435;chrX_8768535_8768536 chrX_8768222_8768434;chrX_8768536_8768932 0.99 0.79 1.09 1.55 2.28 1.39 1.84 2.99 1.70 0.27 3.11 1.55 2.59 3.02 1.89 4.62 2.34 2.71 2.96 0.94 1.57 0.52 0.78 0.90 0.74 0.99 1.37 0.66 0.78 0.65 1.15 0.44 0.53 1.76 0.62 1.15 0.26 0.62 0.74 0.57 0.64 1.87 1.93 0.55 0.55 0.95 1.00 0.87 1.78 1.11 0.97 0.00 0.00 0.86 2.27 1.31 0.64 0.41 K intron_retention lin19 chr2R + chr2R_3806345_3806405 chr2R_3806344_3806345;chr2R_3806405_3806406 chr2R_3805237_3806344;chr2R_3806406_3807452 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 1.02 1.75 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG7927,I_chr3L_8109906_8110404 chr3L + chr3L_8105815_8106114 chr3L_8105815_8106111 chr3L_8105594_8105814;chr3L_8106115_8106427 100.00 100.00 96.88 97.37 96.30 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 96.77 100.00 100.00 100.00 97.44 100.00 100.00 96.43 96.88 100.00 100.00 97.22 100.00 100.00 98.15 97.92 100.00 96.67 100.00 96.55 100.00 100.00 97.14 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 97.50 100.00 97.14 100.00 100.00 97.62 K alternative_donor RI_chr3L_201061_201173,NitFhit,I_chr3L_212783_212843 chr3L + chr3L_203762_203843 chr3L_203791_203843 chr3L_203844_205311;chr3L_203699_203761 100.00 NA 100.00 95.24 100.00 100.00 100.00 100.00 100.00 NA 88.89 100.00 87.50 NA 92.31 100.00 90.00 93.33 100.00 96.00 100.00 100.00 NA NA NA 100.00 NA NA 90.00 100.00 88.89 100.00 96.88 94.44 NA NA 100.00 NA NA 100.00 90.91 95.24 100.00 NA 100.00 100.00 NA 100.00 95.65 NA NA NA NA NA 92.86 NA NA 96.00 K intron_retention CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3088120_3088191 chr3L_3088119_3088120;chr3L_3088191_3088192 chr3L_3087957_3088119;chr3L_3088192_3088663 1.39 1.25 2.80 1.83 1.68 1.80 1.80 0.00 1.58 3.03 1.87 1.39 0.00 1.94 5.00 0.73 2.04 1.52 1.68 1.82 0.89 0.00 0.00 0.59 0.00 0.00 2.55 6.12 1.04 0.00 0.81 1.98 1.32 1.62 0.00 1.49 0.94 0.76 1.05 1.28 1.43 1.72 2.15 0.00 0.00 2.20 1.32 0.63 0.44 2.10 0.90 2.22 2.08 0.00 1.26 0.61 1.95 2.40 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389272_2395659 chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2393243;chrX_2393712_2395659 chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2393244_2393711 chrX_2389172_2389271;chrX_2395660_2395759 50.00 NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor Dbp80 chr3LHet + chr3LHet_2543829_2543938;chr3LHet_2543829_2543887 chr3LHet_2543829_2543917 chr3LHet_2543765_2543828;chr3LHet_2543939_2543944 0.00 0.00 14.29 10.53 0.00 0.00 0.00 6.67 0.00 NA NA 5.26 16.67 0.00 8.33 0.00 7.69 16.67 0.00 5.88 0.00 0.00 16.67 16.67 NA NA 0.00 NA 20.00 0.00 13.33 NA NA 0.00 NA NA NA 0.00 0.00 7.14 NA 0.00 0.00 0.00 NA 0.00 8.33 0.00 9.52 11.11 13.33 0.00 28.57 0.00 13.33 15.38 0.00 8.33 K intron_retention PHGPx chr3L + chr3L_3328184_3328250 chr3L_3328183_3328184;chr3L_3328250_3328251 chr3L_3327860_3328183;chr3L_3328251_3328664 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.15 0.00 0.54 1.00 0.45 0.00 0.00 0.17 0.16 0.00 0.19 0.00 0.00 0.25 0.00 0.00 0.42 0.00 0.00 0.00 0.15 0.25 0.00 0.00 0.27 0.00 0.00 0.19 0.10 0.00 0.00 0.00 0.00 0.00 K intron_retention Stat92E,I_chr3R_16365079_16365145,att-ORFB chr3R - chr3R_16365058_16365121 chr3R_16365057_16365058;chr3R_16365121_16365122 chr3R_16364979_16365057;chr3R_16365122_16365188 28.30 28.75 31.52 24.77 28.30 27.87 21.52 24.29 27.59 23.81 26.23 26.28 25.30 28.12 37.66 33.02 20.00 33.68 35.37 33.33 22.97 30.77 19.63 23.91 19.30 23.68 27.06 28.95 33.33 28.30 30.21 38.24 36.59 28.93 28.33 29.41 17.98 20.93 30.10 27.06 32.43 27.78 29.51 32.61 32.50 27.94 28.57 48.65 29.11 22.78 26.61 21.31 26.67 34.85 28.89 27.54 27.08 46.94 K intron_retention Chc,I_chrX_15728946_15729357 chrX - chrX_15722536_15722595 chrX_15722535_15722536;chrX_15722595_15722596 chrX_15722019_15722535;chrX_15722596_15722682 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 1.92 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.13 0.00 0.21 0.00 0.00 0.00 0.64 0.40 0.00 0.00 K intron_retention mus205 chr2R + chr2R_3682731_3682799 chr2R_3682730_3682731;chr2R_3682799_3682800 chr2R_3682286_3682730;chr2R_3682800_3682914 0.00 NA NA 0.00 NA NA 0.00 0.00 3.23 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA 15.00 0.00 NA NA NA 0.00 5.26 15.00 NA 0.00 NA NA NA NA NA 4.35 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention Pk61C,CE_chr3L_129889_141769,I_chr3L_132531_133824,I_chr3L_133962_134014 chr3L + chr3L_131959_132080 chr3L_131958_131959;chr3L_132080_132081 chr3L_131849_131958;chr3L_132081_132530 100.00 100.00 92.31 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 95.83 100.00 100.00 96.43 100.00 100.00 100.00 94.74 90.00 NA NA NA 100.00 100.00 100.00 NA NA NA 100.00 NA NA 100.00 NA 100.00 NA NA NA 100.00 NA 96.77 94.12 NA NA NA NA NA 96.55 NA 100.00 NA NA NA 100.00 NA NA NA K alternative_last_exon Sug,noncoding_12057 chr3L + chr3L_11677746_11679169 chr3L_11677746_11678378 chr3L_11679170_11679308 chr3L_11678379_11678776 chr3L_11677723_11677745 0.00 0.00 3.70 4.55 0.00 3.70 3.85 0.00 2.86 0.00 7.14 2.33 6.25 4.55 0.00 10.53 0.00 4.76 0.00 2.78 5.26 0.00 2.38 2.94 0.00 0.00 3.03 4.35 3.85 0.00 0.00 0.00 0.00 2.56 5.56 4.35 0.00 4.35 0.00 0.00 0.00 2.08 5.88 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 4.35 0.00 0.00 3.12 0.00 0.00 0.00 K alternative_donor skpA chrX + chrX_550433_551131;chrX_550498_551131;chrX_550638_551131;chrX_550774_551131;chrX_550523_551131;chrX_550654_551131 chrX_550818_551131 chrX_551132_551937;chrX_550426_550432 1.80 2.99 1.72 2.83 0.00 1.89 4.12 1.80 4.00 0.00 3.45 3.49 1.47 1.75 3.45 3.64 1.67 2.74 1.43 4.10 0.00 0.00 1.45 0.00 0.00 1.41 1.85 2.13 0.00 0.00 6.06 2.22 1.67 4.44 0.00 2.56 0.00 0.00 1.64 1.16 0.00 3.54 4.55 3.39 2.38 3.17 1.85 2.04 4.63 0.00 1.67 0.00 2.17 0.00 4.05 4.41 0.00 1.14 K intron_retention sec24,I_chr2R_5768722_5769689 chr2R - chr2R_5765382_5765436 chr2R_5765381_5765382;chr2R_5765436_5765437 chr2R_5765149_5765381;chr2R_5765437_5766059 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 2.07 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 1.16 0.00 0.00 0.00 1.95 4.88 2.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.88 0.00 0.67 0.00 0.00 0.00 1.06 0.00 0.00 0.76 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RI_chrX_502548_513324,CG13366,I_chrX_508729_508806,I_chrX_509497_513324,I_chrX_509727_511407,I_chrX_509727_511477,noncoding_21186,I_chrX_509834_511407,CRE_chrX_509851_511307,I_chrX_510004_511307,I_chrX_510004_511407,I_chrX_513176_513324,I_chrX_513519_513631 chrX - chrX_509834_511477;chrX_509834_511413;chrX_509834_511407 chrX_509834_511307 chrX_509751_509833;chrX_511478_511507 57.14 NA NA 66.67 NA 50.00 72.73 54.55 53.33 66.67 NA 44.44 NA NA NA 52.94 50.00 50.00 45.45 35.71 NA 60.00 40.00 62.50 40.00 62.50 62.50 NA NA NA 80.00 NA NA 41.67 NA NA 57.14 NA NA NA NA 53.85 66.67 71.43 NA NA NA 60.00 63.64 NA 16.67 NA NA NA 66.67 66.67 NA NA K intron_retention I_chr2R_19265701_19270570,CG3530,CG3520 chr2R - chr2R_19279197_19279263 chr2R_19279196_19279197;chr2R_19279263_19279264 chr2R_19278913_19279196;chr2R_19279264_19279426 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 1.20 0.00 6.25 0.00 0.00 0.00 1.75 0.00 0.00 3.85 0.00 0.00 0.00 0.91 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14614,REI_chrX_21856047_21856229,RI_chrX_21856896_21857109 chrX - chrX_21857041_21857109 chrX_21857040_21857041;chrX_21857109_21857110 chrX_21856498_21857040;chrX_21857110_21857209 95.16 95.00 97.50 98.33 96.30 96.67 96.49 93.94 93.94 80.00 95.83 91.86 93.75 94.29 97.44 88.24 96.67 96.67 97.14 93.44 96.67 96.67 98.28 91.67 97.37 94.29 100.00 96.30 95.65 84.62 97.62 93.75 86.36 95.16 93.33 100.00 89.19 97.22 97.87 86.00 100.00 95.00 94.44 95.45 76.92 92.86 91.67 84.62 94.44 96.00 96.55 94.87 84.62 93.75 95.65 95.83 94.12 100.00 N cassette crol,I_chr2L_11799403_11802904 chr2L - chr2L_11800323_11803784 chr2L_11800323_11802286;chr2L_11803675_11803784 chr2L_11802287_11803674 chr2L_11800155_11800322;chr2L_11803785_11803898 100.00 100.00 100.00 73.91 100.00 100.00 100.00 80.00 87.69 100.00 100.00 100.00 100.00 100.00 72.73 100.00 100.00 100.00 100.00 84.72 100.00 74.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 86.96 78.57 81.82 85.45 100.00 100.00 85.00 100.00 100.00 100.00 100.00 100.00 74.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor Bj1 chr3L - chr3L_5925418_5925624 chr3L_5925418_5925505 chr3L_5924718_5925417;chr3L_5925625_5925725 98.36 98.00 100.00 94.74 97.30 100.00 98.36 100.00 99.13 96.30 97.56 100.00 97.83 100.00 100.00 100.00 95.56 98.08 100.00 98.99 100.00 100.00 96.15 98.75 98.08 100.00 96.30 91.43 96.67 100.00 97.73 100.00 100.00 98.65 97.67 100.00 94.12 97.56 100.00 98.80 100.00 99.04 97.87 97.83 100.00 97.67 100.00 97.56 100.00 98.11 93.55 98.04 97.83 97.44 98.46 98.28 98.41 98.36 K alternative_donor CG11347,I_chr3L_4412551_4417819 chr3L + chr3L_4419173_4419428 chr3L_4419263_4419428 chr3L_4419429_4419663;chr3L_4418782_4419172 30.00 26.09 24.00 25.93 25.00 22.22 36.36 36.84 36.36 50.00 20.00 31.82 38.10 35.71 26.32 50.00 26.67 26.67 35.00 37.25 33.33 12.39 29.27 34.38 29.17 31.03 48.48 37.14 32.50 26.32 32.14 20.00 29.63 38.46 21.74 34.29 31.71 29.17 34.88 15.52 31.43 28.57 29.41 42.11 27.03 21.88 30.51 25.00 35.14 23.26 22.86 25.00 37.93 20.69 30.00 45.45 36.11 29.17 K alternative_donor RpS18,CG8908,EI_chr2R_16151918_16151997,I_chr2R_16151918_16152036,I_chr2R_16151938_16152065,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151938_16151997;chr2R_16151918_16151997 chr2R_16151942_16151997 chr2R_16151998_16152066;chr2R_16151852_16151917 0.02 0.02 0.07 0.02 0.00 0.00 0.04 0.04 0.03 0.00 0.00 0.04 0.03 0.00 0.00 0.00 0.05 0.00 0.00 0.04 0.05 0.09 0.02 0.00 0.09 0.05 0.07 0.16 0.22 0.00 0.06 0.03 0.00 0.00 0.04 0.00 0.02 0.02 0.03 0.02 0.00 0.03 0.03 0.02 0.00 0.07 0.03 0.00 0.06 0.00 0.04 0.07 0.03 0.00 0.04 0.02 0.00 0.02 K intron_retention CG10103,noncoding_10997 chr3L - chr3L_6747908_6748519 chr3L_6747907_6747908;chr3L_6748519_6748520 chr3L_6747845_6747907;chr3L_6748520_6749258 42.31 45.45 53.85 38.24 38.46 44.00 93.33 65.38 62.07 58.33 40.00 44.68 59.09 55.00 52.00 59.09 47.37 39.13 39.13 50.00 40.91 26.09 60.00 48.15 33.33 33.33 31.25 56.25 60.00 41.67 40.00 38.71 42.11 61.29 35.29 32.14 35.29 50.00 31.25 42.31 38.89 40.00 52.94 55.56 35.29 40.00 44.83 43.18 55.00 41.03 43.33 58.82 28.57 38.71 50.00 37.93 35.29 29.03 K alternative_donor Hsc70-4 chr3R + chr3R_11068903_11070081 chr3R_11068907_11070081 chr3R_11070082_11072336;chr3R_11068878_11068902 41.67 NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA 75.00 80.95 NA NA NA NA NA 35.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Myo61F,mtacp1,I_chr3L_1330291_1330865,I_chr3L_1330291_1331279,RI_chr3L_1330929_1331041,l(3)02640 chr3L + chr3L_1330291_1330865 chr3L_1330290_1330291;chr3L_1330865_1330866 chr3L_1330191_1330290;chr3L_1330866_1330928 84.85 90.91 84.62 84.85 100.00 100.00 79.41 83.78 85.11 93.75 82.61 84.21 87.10 80.00 86.21 83.78 94.12 90.00 95.24 80.30 84.21 66.67 89.66 72.41 86.36 84.62 83.33 94.12 73.08 66.67 88.10 80.00 92.86 85.71 71.43 90.91 84.38 85.00 72.22 85.71 92.86 90.24 77.78 80.95 80.95 77.42 80.95 92.31 82.86 91.30 86.67 93.75 85.71 67.86 88.24 78.95 76.47 85.00 K jcn_only_AA CG3829,I_chr2R_20875497_20875710 chr2R + chr2R_20877407_20877470 chr2R_20877407_20877465 chr2R_20876815_20877406;chr2R_20877471_20877967 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 100.00 NA 98.68 100.00 NA NA NA 100.00 100.00 100.00 NA NA NA NA NA NA 95.45 100.00 NA 100.00 100.00 NA 100.00 NA 97.30 100.00 NA 100.00 95.24 100.00 100.00 100.00 NA NA NA NA NA NA NA K alternative_donor CG2641 chr3R + chr3R_3620754_3621314 chr3R_3620942_3621314 chr3R_3621315_3621870;chr3R_3620592_3620753 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 96.55 100.00 93.33 95.24 95.65 100.00 100.00 93.75 100.00 100.00 100.00 93.75 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 94.44 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 93.75 100.00 100.00 100.00 K jcn_only_AA REI_chr3L_3042451_3043440,Jafrac2,I_chr3L_3042851_3043044,I_chr3L_3043202_3043271 chr3L + chr3L_3042451_3043440 chr3L_3042451_3043044 chr3L_3042396_3042450 96.15 98.39 95.71 95.41 96.08 97.73 96.91 94.57 98.84 100.00 95.83 99.21 92.19 97.59 95.74 97.22 100.00 97.10 97.33 95.83 100.00 96.15 96.43 92.19 96.67 98.82 95.56 NA 87.10 87.80 100.00 94.83 97.85 98.90 100.00 100.00 98.46 97.44 96.77 95.12 88.89 96.67 92.98 94.87 89.61 91.04 94.12 85.00 100.00 95.59 91.18 94.00 96.15 NA 97.47 93.33 96.00 94.85 K intron_retention CG30005,I_chr2R_5495525_5495581 chr2R + chr2R_5495144_5495205 chr2R_5495143_5495144;chr2R_5495205_5495206 chr2R_5495041_5495143;chr2R_5495206_5495522 0.00 0.00 0.00 1.16 0.00 0.00 0.00 1.35 1.27 0.00 0.00 2.47 0.00 2.94 0.00 0.00 0.00 0.00 4.76 1.33 2.78 0.00 2.90 0.00 0.00 0.00 7.81 5.26 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 1.54 0.00 1.67 2.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 3.57 0.00 0.00 2.56 2.27 1.82 0.00 0.00 K intron_retention PNUTS,I_chr2L_870553_871317 chr2L + chr2L_870553_871352 chr2L_870552_870553;chr2L_871352_871353 chr2L_870478_870552;chr2L_871353_871417 100.00 NA NA 100.00 NA NA 100.00 100.00 94.12 NA NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 100.00 NA 91.67 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 92.31 100.00 90.91 100.00 NA NA NA 95.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 93.33 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 K intron_retention CG7713 chr3R + chr3R_13620860_13621082 chr3R_13620859_13620860;chr3R_13621082_13621083 chr3R_13620788_13620859;chr3R_13621083_13621361 13.33 NA NA NA NA NA 50.00 NA 9.09 NA NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette msn,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2564696_2566201 chr3L_2564696_2565600;chr3L_2565622_2566201 chr3L_2565601_2565621 chr3L_2564397_2564695;chr3L_2566202_2566375 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.49 100.00 100.00 98.61 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563503_567573 chr3R_563502_563503;chr3R_567573_567574 chr3R_563488_563502;chr3R_567574_568885 8.86 12.50 10.00 5.56 0.00 NA 15.00 8.33 9.62 NA NA 16.67 10.71 8.33 0.00 12.20 0.00 11.11 11.11 10.00 0.00 25.00 8.33 0.00 NA 0.00 15.38 NA 13.33 11.11 9.38 NA 0.00 5.88 NA NA 5.26 6.25 NA 14.29 0.00 7.32 12.50 6.67 NA 6.90 NA 0.00 14.63 0.00 15.00 4.76 NA NA 8.33 12.00 23.08 10.53 K alternative_donor CaMKI,I_chr4_466377_467256,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_466912_467256;chr4_466816_467256;chr4_467113_467256;chr4_466858_467256;chr4_466798_467256 chr4_466896_467256 chr4_467257_467272;chr4_466792_466797 0.00 0.00 16.67 10.00 NA 0.00 7.69 10.00 14.29 NA NA 0.00 0.00 0.00 0.00 8.33 16.67 0.00 16.67 0.00 NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 NA NA 16.67 NA NA NA NA NA NA NA 0.00 16.67 NA NA NA NA NA 9.09 NA NA 0.00 NA NA 0.00 NA NA NA K intron_retention CG9911 chrX - chrX_16188074_16188147 chrX_16188073_16188074;chrX_16188147_16188148 chrX_16187886_16188073;chrX_16188148_16188346 0.18 0.00 0.00 0.55 0.00 0.00 0.28 0.00 0.54 0.00 0.40 0.18 0.00 0.41 0.00 0.47 0.00 0.87 0.00 0.52 0.00 0.81 0.37 0.00 0.00 0.30 1.11 0.00 1.15 0.00 0.28 0.00 0.47 0.00 0.00 0.00 0.48 0.00 0.38 0.00 0.00 0.78 0.43 0.00 0.28 0.58 0.00 0.74 0.48 0.00 0.00 0.00 0.00 0.43 0.52 0.72 0.24 0.43 K intron_retention CG31216 chr3R + chr3R_15523689_15523785 chr3R_15523688_15523689;chr3R_15523785_15523786 chr3R_15523248_15523688;chr3R_15523786_15524433 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.29 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette pyd,I_chr3R_4654041_4664113,I_chr3R_4749124_4756437 chr3R - chr3R_4654041_4664113 chr3R_4654041_4657863;chr3R_4657997_4658075;chr3R_4658368_4658425;chr3R_4658667_4659696;chr3R_4659797_4659860;chr3R_4660010_4660078;chr3R_4660672_4664113 chr3R_4657864_4657996;chr3R_4658076_4658367;chr3R_4658426_4658666;chr3R_4659697_4659796;chr3R_4659861_4660009;chr3R_4660079_4660671 chr3R_4653941_4654040;chr3R_4664114_4664213 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG11943 chrX + chrX_19746388_19746456 chrX_19746387_19746388;chrX_19746456_19746457 chrX_19746249_19746387;chrX_19746457_19746602 7.78 7.78 9.59 7.41 10.91 10.42 8.51 8.24 5.88 0.00 13.85 8.86 4.00 7.81 8.43 0.93 5.56 6.49 3.66 8.27 11.48 32.08 7.83 7.23 29.63 38.24 11.34 26.67 22.58 5.08 7.53 0.00 8.47 7.89 8.47 8.45 8.65 3.90 5.17 5.68 23.53 8.45 1.82 3.95 7.69 7.32 1.96 8.57 6.17 4.17 6.09 7.27 9.09 4.17 5.77 5.71 10.81 0.00 K intron_retention RI_chr3L_21188731_21188785,CG33054,CG33056,noncoding_13933 chr3L - chr3L_21193615_21195847 chr3L_21193614_21193615;chr3L_21195847_21195848 chr3L_21193577_21193614;chr3L_21195848_21195859 34.31 NA 45.45 30.00 NA NA 54.55 41.67 33.33 NA NA 40.00 NA 28.57 45.45 25.93 NA NA 56.25 28.00 NA 50.00 38.89 45.45 NA NA NA NA NA NA 44.44 NA NA 32.00 NA NA 33.33 NA NA 29.41 NA 33.33 NA 17.65 NA 28.57 29.41 41.67 38.71 26.67 53.33 NA NA NA 35.29 25.00 41.67 22.22 K jcn_only_AA CG7177 chr3L - chr3L_21540489_21541820 chr3L_21541246_21541820 chr3L_21541821_21541952 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 3.85 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 3.70 NA 5.00 0.00 NA 2.38 NA 0.00 NA NA NA NA 0.00 NA 8.33 0.00 NA NA NA 0.00 NA NA K intron_retention MED26,RE_chr4_803564_803799,RI_chr4_803872_803924,I_chr4_807836_808089 chr4 - chr4_803872_803927 chr4_803871_803872;chr4_803927_803928 chr4_803800_803871;chr4_803928_804024 1.47 NA 14.29 4.76 NA NA 6.82 9.09 5.56 NA NA 4.65 0.00 4.17 0.00 4.26 7.69 NA 0.00 2.94 NA NA 0.00 NA NA 0.00 12.50 NA NA NA 0.00 NA NA 5.26 NA 6.67 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K jcn_only_AA CG7616 chr3L + chr3L_11163250_11163321 chr3L_11163250_11163309 chr3L_11163241_11163249;chr3L_11163322_11164146 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 87.50 K alternative_donor noncoding_5243,I_chr2R_4553376_4563976,l(2)44DEa,I_chr2R_4553577_4562151,I_chr2R_4553817_4565934,I_chr2R_4554300_4563976,I_chr2R_4565692_4565934 chr2R + chr2R_4553577_4554272 chr2R_4553817_4554272 chr2R_4554273_4554299;chr2R_4553477_4553576 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG6509 chr2L - chr2L_11516658_11516728 chr2L_11516657_11516658;chr2L_11516728_11516729 chr2L_11516509_11516657;chr2L_11516729_11516801 100.00 100.00 100.00 100.00 100.00 100.00 96.55 96.55 100.00 100.00 100.00 96.67 95.00 100.00 100.00 100.00 95.45 100.00 100.00 96.43 100.00 100.00 96.30 95.24 100.00 100.00 100.00 100.00 100.00 95.24 91.30 100.00 94.74 97.06 100.00 95.65 94.12 100.00 95.83 96.77 100.00 95.12 100.00 100.00 NA 85.71 90.00 100.00 100.00 100.00 96.88 100.00 NA NA 100.00 100.00 NA 100.00 K intron_retention foxo,I_chr3R_9907154_9907227,I_chr3R_9907161_9907218 chr3R + chr3R_9907154_9907218 chr3R_9907153_9907154;chr3R_9907218_9907219 chr3R_9907061_9907153;chr3R_9907219_9907318 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 NA 6.25 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.03 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 K intron_retention CG6838,I_chr3L_22709306_22709668 chr3L - chr3L_22709306_22709397 chr3L_22709305_22709306;chr3L_22709397_22709398 chr3L_22709206_22709305;chr3L_22709398_22709514 0.00 NA NA 0.00 NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 6.67 0.00 NA NA NA 0.00 0.00 NA NA 7.14 NA 0.00 2.94 0.00 0.00 NA 0.00 NA 4.17 NA NA 0.00 0.00 NA NA 0.00 14.29 NA NA 0.00 NA K jcn_only_AD CG3077 chr2L - chr2L_2765428_2765504 chr2L_2765428_2765495 chr2L_2765284_2765427;chr2L_2765505_2765675 96.72 92.59 96.00 100.00 100.00 97.14 100.00 98.08 98.51 96.77 100.00 95.83 NA 96.77 84.21 97.37 96.67 94.44 86.36 94.94 100.00 97.20 97.75 95.38 87.88 93.33 93.10 88.89 100.00 100.00 100.00 97.44 92.86 97.87 100.00 93.75 95.95 94.74 88.64 88.52 91.18 97.44 94.29 97.44 97.67 92.86 91.18 91.84 98.08 97.73 98.04 97.56 97.30 100.00 95.24 93.33 96.67 94.12 K alternative_acceptor yuri,F_chr2L_15260838_15261717 chr2L - chr2L_15262001_15262069 chr2L_15262013_15262069 chr2L_15262070_15262304;chr2L_15261912_15262000 92.65 91.49 85.71 95.06 88.37 97.22 88.52 93.33 91.85 100.00 88.57 88.57 95.92 91.11 94.44 92.42 96.43 95.56 90.00 91.11 97.67 92.86 92.65 92.75 96.00 91.67 89.09 95.24 90.00 82.86 91.49 81.48 92.50 93.24 96.55 100.00 93.62 93.48 85.42 97.92 96.67 92.38 97.67 93.10 84.09 94.83 92.00 93.33 91.18 87.50 95.31 89.58 89.47 95.24 90.16 93.22 93.18 83.72 K jcn_only_AD CG15098,I_chr2R_14721290_14721355 chr2R - chr2R_14721290_14721469 chr2R_14721290_14721355 chr2R_14721190_14721289;chr2R_14721470_14721623 0.00 0.08 0.00 0.00 0.00 0.00 0.06 0.10 0.04 0.00 0.16 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.19 0.07 0.20 0.13 0.10 0.00 0.10 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.08 0.16 0.00 0.00 0.05 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.06 K alternative_donor Pi3K92E,I_chr3R_16459436_16459551,I_chr3R_16459436_16459848 chr3R - chr3R_16459436_16459848;chr3R_16459436_16460267;chr3R_16459436_16460340;chr3R_16459436_16460287 chr3R_16459436_16459551 chr3R_16459336_16459435;chr3R_16460341_16460435 6.25 5.56 5.26 7.89 7.14 7.14 11.11 6.25 4.76 11.11 8.33 7.89 5.26 3.57 4.55 2.70 5.88 7.14 4.76 6.67 7.69 5.00 3.03 6.67 9.09 5.88 5.26 7.69 12.50 5.00 8.00 0.00 7.14 10.00 6.67 4.55 0.00 0.00 8.33 2.70 14.29 6.25 6.67 0.00 0.00 8.33 0.00 10.00 6.25 0.00 4.76 5.56 0.00 0.00 4.17 8.33 9.09 14.29 K jcn_only_AD CG17082,I_chr2R_632143_635290,R_chr2R_642176_644740,I_chr2R_644094_644145,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_632083_636726;chr2R_631907_636726;chr2R_631971_636726;chr2R_632143_636726 chr2R_631984_636726 chr2R_636727_636891;chr2R_631902_631906 6.90 NA NA 6.38 NA NA 7.89 8.57 9.76 NA NA 4.76 NA 9.09 NA 8.33 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.23 NA NA NA NA NA NA NA 3.12 NA NA NA NA NA NA 6.90 NA NA NA NA NA NA NA NA NA K jcn_only_AA armi,I_chr3L_3466623_3467559 chr3L + chr3L_3461671_3462120 chr3L_3461671_3462103 chr3L_3461541_3461670;chr3L_3462121_3462299 3.38 2.90 1.25 0.00 0.00 4.62 4.17 4.38 3.32 0.00 3.80 0.60 4.30 2.94 4.62 3.26 0.00 3.30 2.67 3.38 1.43 10.71 3.25 4.44 6.38 4.84 3.06 2.60 10.94 2.88 14.29 3.70 4.17 4.17 3.12 1.45 4.31 4.71 8.86 2.61 0.00 5.59 3.39 1.45 7.02 4.35 3.77 6.74 1.64 3.33 5.13 4.17 0.00 0.00 1.25 7.50 2.27 11.11 K alternative_donor Dek chr2R + chr2R_12743809_12744310 chr2R_12743821_12744310 chr2R_12744311_12744557;chr2R_12743780_12743808 3.76 2.90 3.23 5.56 3.12 4.62 3.76 1.79 4.23 2.90 8.82 2.34 4.00 4.48 3.49 4.21 3.90 7.81 3.64 3.28 6.82 2.06 2.05 4.21 2.30 2.33 4.62 1.96 4.27 4.39 6.06 1.95 2.79 2.67 1.89 6.56 2.08 4.11 4.55 4.22 2.86 3.95 2.99 3.90 2.88 5.21 5.45 3.24 2.56 8.33 5.45 3.57 1.82 3.45 4.82 6.52 6.56 2.67 K alternative_donor CG3077 chr2L - chr2L_2764442_2764507 chr2L_2764442_2764504 chr2L_2764373_2764441;chr2L_2764508_2764573 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 92.31 100.00 92.86 100.00 100.00 100.00 100.00 94.44 98.70 100.00 98.36 100.00 100.00 97.30 100.00 97.62 100.00 93.33 100.00 97.62 100.00 100.00 100.00 98.31 100.00 98.31 100.00 96.67 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 97.96 97.62 100.00 100.00 100.00 100.00 100.00 100.00 96.88 K intron_retention drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9390293 chr2R_9389596_9389597;chr2R_9390293_9390294 chr2R_9389497_9389596;chr2R_9390294_9390295 76.32 85.71 63.89 75.86 56.52 66.67 73.44 69.86 64.21 86.67 60.00 69.12 63.64 68.97 76.32 78.18 64.52 63.64 74.47 48.42 60.00 79.41 82.05 85.29 65.38 72.97 96.43 95.65 77.78 96.15 69.44 66.67 87.27 73.85 94.74 91.67 80.00 81.25 72.22 70.97 87.50 68.75 85.19 96.97 71.43 86.36 96.30 58.62 76.92 96.00 96.55 78.57 73.68 90.91 67.35 94.12 88.89 88.24 K intron_retention CG30122,I_chr2R_14523798_14523844,I_chr2R_14526123_14526189 chr2R - chr2R_14523777_14523844 chr2R_14523776_14523777;chr2R_14523844_14523845 chr2R_14523698_14523776;chr2R_14523845_14523944 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention PH4alphaEFB,I_chr3R_26305150_26309614 chr3R + chr3R_26309785_26309841 chr3R_26309784_26309785;chr3R_26309841_26309842 chr3R_26309615_26309784;chr3R_26309842_26310324 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.27 0.23 0.00 0.00 0.47 0.00 0.00 0.00 0.42 0.00 0.00 0.38 0.66 0.00 0.00 0.46 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG8111 chr3L - chr3L_7907098_7907160 chr3L_7907098_7907158 chr3L_7906760_7907097;chr3L_7907161_7907751 98.98 100.00 100.00 96.49 100.00 100.00 100.00 98.18 98.98 98.25 97.78 98.88 100.00 97.30 97.96 100.00 94.74 100.00 97.44 97.64 100.00 99.00 99.17 100.00 98.31 97.30 100.00 100.00 95.92 100.00 97.56 100.00 98.99 98.53 98.21 100.00 98.59 100.00 97.44 99.26 98.88 100.00 100.00 99.07 99.04 100.00 98.61 98.88 98.21 98.88 96.55 100.00 95.52 99.13 95.74 99.04 98.78 97.35 N jcn_only_AA Moca-cyp chr3R + chr3R_24167182_24167348;chr3R_24167182_24167249;chr3R_24167182_24167906;chr3R_24167182_24167243 chr3R_24167182_24167260 chr3R_24167094_24167181;chr3R_24167907_24167936 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 6.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention sec31,I_chr2R_4783150_4783708 chr2R + chr2R_4782979_4783036 chr2R_4782978_4782979;chr2R_4783036_4783037 chr2R_4782735_4782978;chr2R_4783037_4783149 0.00 0.00 0.00 0.52 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention lace chr2L + chr2L_15499425_15502116 chr2L_15499424_15499425;chr2L_15502116_15502117 chr2L_15499109_15499424;chr2L_15502117_15503226 1.24 0.00 1.06 0.84 0.00 1.12 2.56 2.24 2.85 0.00 2.89 1.75 3.60 2.37 2.03 2.49 1.23 1.38 0.97 2.73 2.52 0.94 0.59 1.49 1.20 1.01 2.11 3.12 6.62 2.16 1.82 2.41 1.20 1.24 0.00 1.13 1.33 0.83 1.01 1.50 0.00 2.34 0.60 1.03 1.39 0.00 1.65 2.65 1.68 0.57 1.60 1.95 0.52 0.74 0.38 0.00 0.00 0.00 K intron_retention nct,I_chr3R_20679262_20679308 chr3R + chr3R_20679262_20679324 chr3R_20679261_20679262;chr3R_20679324_20679325 chr3R_20679193_20679261;chr3R_20679325_20679393 1.75 1.22 1.53 2.43 1.96 1.01 2.69 0.00 1.80 0.00 2.50 1.83 3.23 2.11 1.67 2.82 0.00 0.85 0.00 1.77 0.00 0.73 2.08 1.88 1.75 1.83 2.40 4.11 2.99 1.59 6.06 1.09 0.53 2.96 2.06 4.08 1.98 2.58 0.00 1.88 0.00 0.91 1.06 1.18 2.86 0.00 0.79 1.39 3.05 1.12 1.30 3.12 0.00 1.83 2.31 1.68 1.27 0.00 K alternative_donor Rbcn-3A chrX - chrX_6137544_6137622 chrX_6137544_6137619 chrX_6137187_6137543;chrX_6137623_6137847 0.00 0.00 0.00 1.88 0.00 1.30 0.80 0.00 1.55 1.54 0.00 0.67 0.00 1.20 0.95 2.04 0.00 1.12 1.09 0.50 0.00 0.56 0.00 0.00 1.19 0.00 0.68 2.44 0.00 0.00 0.00 0.00 0.56 0.63 0.00 2.38 0.58 0.99 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 K intron_retention CG8552,I_chr2L_8140779_8156516 chr2L - chr2L_8134513_8134577 chr2L_8134512_8134513;chr2L_8134577_8134578 chr2L_8134264_8134512;chr2L_8134578_8134773 98.21 100.00 100.00 98.89 95.65 95.83 98.91 97.33 99.25 95.24 100.00 98.72 97.73 100.00 97.22 97.70 97.87 100.00 100.00 98.61 100.00 83.67 100.00 96.36 100.00 100.00 100.00 95.35 97.14 97.62 96.97 93.33 98.15 100.00 95.45 100.00 97.92 96.00 95.24 96.77 100.00 97.47 100.00 97.67 100.00 98.21 93.88 89.74 98.68 98.36 98.28 97.30 100.00 97.37 100.00 97.96 100.00 98.53 K intron_retention CG7028,I_chr3L_207277_208117 chr3L - chr3L_209375_209449 chr3L_209374_209375;chr3L_209449_209450 chr3L_209142_209374;chr3L_209450_209710 0.00 0.00 0.00 0.93 0.00 0.00 7.46 0.00 2.04 0.00 0.00 0.00 0.00 2.33 0.00 3.12 0.00 0.00 2.50 3.26 2.78 0.00 0.00 0.00 2.63 0.00 5.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rtnl1,I_chr2L_4994416_4994507,RE_chr2L_4994997_5008180,I_chr2L_4999386_5000201,I_chr2L_5027222_5028118 chr2L - chr2L_4994445_4994507 chr2L_4994444_4994445;chr2L_4994507_4994508 chr2L_4994339_4994444;chr2L_4994508_4994607 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.13 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 K intron_retention CG13900,snoRNA:Me5.8S-G74,I_chr3L_830745_830907 chr3L - chr3L_829852_830033 chr3L_829851_829852;chr3L_830033_830034 chr3L_827877_829851;chr3L_830034_830341 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.53 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG12030,Rev1 chr3L + chr3L_655894_655947 chr3L_655893_655894;chr3L_655947_655948 chr3L_654536_655893;chr3L_655948_656230 0.00 0.00 2.25 3.88 4.00 1.32 3.30 1.96 2.60 0.00 0.00 2.82 0.00 0.00 1.32 4.49 4.17 0.00 5.88 0.66 0.00 0.00 0.00 0.00 0.00 3.51 0.00 2.78 0.00 0.00 1.54 0.00 0.00 1.80 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 3.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG5815,CG5880,CG5882 chr3R + chr3R_22938413_22938558 chr3R_22938413_22938552 chr3R_22938313_22938412;chr3R_22938559_22939933 100.00 NA NA 96.00 NA NA NA NA 96.00 NA NA 90.91 NA NA NA 100.00 NA NA NA 97.56 NA 90.48 100.00 100.00 NA NA NA 96.15 100.00 NA NA NA NA 100.00 100.00 95.24 95.83 NA 100.00 100.00 NA NA NA 100.00 NA NA 96.77 100.00 100.00 100.00 90.00 NA 100.00 NA 100.00 89.29 100.00 92.86 K jcn_only_AA I_chr3L_834336_834491,CG13887,Gr61a chr3L + chr3L_837946_838048;chr3L_837946_838021 chr3L_837946_838012 chr3L_837877_837945;chr3L_838049_838624 0.00 0.00 0.00 0.00 1.85 0.00 1.55 2.01 0.00 1.49 0.00 0.97 0.00 1.89 0.00 2.26 2.50 2.00 1.61 0.57 0.00 0.00 0.00 0.00 3.03 2.56 4.55 3.33 1.54 2.94 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.72 2.08 1.23 0.00 0.00 0.00 0.65 0.00 0.00 3.23 0.00 NA NA 0.00 0.00 0.00 0.00 K jcn_only_AD Roughened,I_chr3L_1861677_1861777,I_chr3L_1861677_1861929,I_chr3L_1861677_1862177 chr3L - chr3L_1861677_1862060;chr3L_1861677_1862177 chr3L_1861677_1861777 chr3L_1861577_1861676;chr3L_1862178_1862277 0.12 0.56 0.22 0.23 0.00 0.54 0.00 0.00 0.00 0.00 0.34 0.00 0.34 0.32 0.00 0.00 0.41 0.31 0.61 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.32 0.89 0.00 0.51 0.78 0.76 0.00 0.00 0.00 0.00 0.73 0.22 0.12 0.32 0.45 1.25 0.14 0.00 0.33 0.00 0.00 0.00 0.00 0.31 0.00 0.48 0.33 0.00 0.64 K alternative_acceptor MBD-like chr3R + chr3R_5385754_5385996 chr3R_5385754_5385993 chr3R_5385501_5385753;chr3R_5385997_5386032 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD RpL30,I_chr2L_19008540_19008948,REI_chr2L_19008544_19008723,I_chr2L_19008544_19008918,snoRNA:Me28S-A2113 chr2L - chr2L_19008544_19008948;chr2L_19008544_19008918 chr2L_19008544_19008723 chr2L_19008444_19008543;chr2L_19008949_19009018 1.73 1.22 1.03 1.25 1.35 0.96 1.16 1.10 1.29 2.05 1.40 1.27 0.95 1.14 1.24 1.81 0.80 1.34 0.96 1.64 1.49 7.88 2.30 2.20 2.27 1.17 1.78 2.54 2.11 2.05 5.94 2.32 2.07 1.32 1.71 1.88 1.91 1.81 1.79 2.60 1.63 1.03 1.33 2.03 1.53 1.75 2.08 2.06 2.22 2.52 2.81 2.13 1.51 1.84 1.42 2.21 1.73 1.48 K alternative_acceptor nrv2,I_chr2L_6791842_6794492,I_chr2L_6793397_6794492,I_chr2L_6793405_6793916,I_chr2L_6793405_6794499,I_chr2L_6793684_6794492 chr2L - chr2L_6793374_6794492 chr2L_6793405_6794492 chr2L_6794493_6794592;chr2L_6793305_6793373 100.00 100.00 96.77 100.00 100.00 100.00 94.44 100.00 97.44 100.00 100.00 95.24 100.00 100.00 100.00 100.00 93.33 100.00 100.00 98.08 93.75 100.00 100.00 100.00 92.31 100.00 100.00 NA 92.31 96.43 100.00 100.00 97.62 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.67 97.83 100.00 100.00 95.65 94.74 100.00 96.88 95.45 96.15 100.00 K intron_retention CG5706,I_chr3R_20078025_20078083 chr3R - chr3R_20078025_20078087 chr3R_20078024_20078025;chr3R_20078087_20078088 chr3R_20077925_20078024;chr3R_20078088_20078118 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 0.00 4.44 0.00 7.32 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG4096,I_chrX_5601534_5602019 chrX + chrX_5601534_5601593 chrX_5601534_5601589 chrX_5601528_5601533;chrX_5601594_5601737 82.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 67.86 NA 85.00 91.30 NA NA NA NA 78.57 NA NA NA NA 82.76 NA NA NA NA NA NA NA NA K alternative_donor Idh,I_chr3L_8351006_8351949,I_chr3L_8351036_8351655 chr3L - chr3L_8351006_8351949 chr3L_8351006_8351655 chr3L_8350936_8351005;chr3L_8351950_8351962 100.00 100.00 93.75 95.45 100.00 100.00 95.83 97.30 97.92 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 98.04 100.00 93.33 100.00 96.30 100.00 95.00 100.00 95.24 93.33 100.00 100.00 100.00 95.45 96.88 100.00 96.15 100.00 95.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 95.24 100.00 95.00 100.00 100.00 96.00 100.00 94.44 94.12 100.00 94.74 100.00 100.00 K jcn_only_AD CG3321,RI_chr3R_10154615_10155360 chr3R + chr3R_10152811_10152974;chr3R_10152906_10152974;chr3R_10152911_10152974 chr3R_10152850_10152974 chr3R_10152975_10153473;chr3R_10152803_10152810 89.22 83.33 92.91 87.75 93.26 96.83 79.02 88.34 91.91 86.11 92.48 90.60 90.51 90.27 89.37 92.73 92.66 90.00 91.43 93.03 92.59 72.22 82.55 91.98 93.00 87.96 80.83 83.56 73.63 72.50 91.79 89.77 85.07 95.23 76.81 83.72 85.71 89.22 89.58 69.80 79.37 93.31 94.67 79.19 91.96 76.11 87.50 86.60 96.52 89.74 82.91 82.17 78.06 73.97 93.63 88.12 89.32 78.36 K alternative_donor dNAT1,CG13319,RI_chr2R_8812301_8816468 chr2R + chr2R_8805410_8805499;chr2R_8805260_8805499 chr2R_8805206_8805499 chr2R_8805500_8808364;chr2R_8805191_8805205 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 20.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 25.00 NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K alternative_acceptor HLH106,RI_chr3L_19787260_19787323 chr3L + chr3L_19789493_19789558 chr3L_19789493_19789552 chr3L_19788002_19789492;chr3L_19789559_19790358 100.00 100.00 100.00 99.74 100.00 100.00 99.74 99.75 99.81 99.06 100.00 99.78 100.00 99.53 99.62 99.70 100.00 100.00 100.00 99.66 100.00 100.00 99.68 100.00 100.00 99.61 99.71 100.00 100.00 99.03 100.00 100.00 98.99 100.00 99.41 100.00 100.00 100.00 100.00 100.00 100.00 99.79 99.48 99.60 100.00 99.59 100.00 100.00 99.77 100.00 100.00 100.00 100.00 99.39 99.62 99.51 100.00 100.00 K cassette Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11835112_11836312;chr2R_11835109_11836312 chr2R_11835112_11835509,chr2R_11835109_11835509;chr2R_11836216_11836312 chr2R_11835510_11836215 chr2R_11834432_11835108;chr2R_11836313_11836490 88.57 87.72 88.24 77.92 90.00 83.33 93.88 81.25 88.57 84.62 80.56 89.16 76.47 91.43 91.67 91.49 88.24 93.02 93.02 80.95 93.55 90.11 84.27 83.33 85.11 86.67 85.25 96.00 91.49 93.75 75.86 91.30 93.33 84.06 91.30 87.76 89.66 85.71 81.52 89.89 90.91 85.42 87.88 90.54 84.72 90.14 94.12 92.31 86.25 94.55 86.84 95.24 86.67 81.54 97.73 82.43 90.00 90.91 K intron_retention I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499338_1501350 chr3L_1499337_1499338;chr3L_1501350_1501351 chr3L_1499043_1499337;chr3L_1501351_1501397 93.94 90.00 100.00 100.00 NA 93.33 NA 100.00 100.00 NA 100.00 100.00 96.55 94.44 87.50 95.24 100.00 100.00 95.00 96.88 100.00 92.31 81.82 95.24 100.00 87.50 94.12 93.75 90.00 92.31 80.00 NA 80.00 95.24 92.86 NA 95.83 93.33 90.91 93.55 94.12 95.24 90.91 93.75 87.50 94.74 85.71 75.00 95.65 93.33 95.00 86.67 87.50 100.00 93.33 76.47 90.00 94.44 K alternative_acceptor Lerp chr3R - chr3R_22688286_22688358 chr3R_22688289_22688358 chr3R_22688359_22688432;chr3R_22688202_22688285 14.29 NA NA NA NA NA 9.09 14.29 18.18 NA NA 9.52 NA NA NA 5.88 NA NA NA 22.22 NA NA 7.69 NA NA NA 14.29 NA NA NA 21.43 NA NA 5.56 NA NA NA NA 15.00 NA NA 15.79 NA NA NA NA NA NA 25.00 NA 19.05 NA NA NA 14.29 NA NA NA K jcn_only_AD CG30193,CG30190 chr2R + chr2R_18812899_18813071 chr2R_18813008_18813071 chr2R_18813072_18813135;chr2R_18812672_18812898 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG8526 chr3R + chr3R_5627575_5627638 chr3R_5627575_5627635 chr3R_5627506_5627574;chr3R_5627639_5627704 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA 91.67 100.00 NA NA NA 100.00 NA 100.00 92.31 NA NA 90.00 100.00 NA NA NA NA NA NA NA NA NA 88.89 NA NA NA 75.00 NA NA NA 90.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA 87.50 NA 100.00 NA K jcn_only_AA CG15609,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12900214_12900789 chr2R_12900280_12900789 chr2R_12900790_12900889;chr2R_12899457_12900213 100.00 100.00 100.00 96.77 100.00 100.00 81.19 98.86 98.64 100.00 100.00 100.00 100.00 100.00 100.00 98.57 100.00 100.00 100.00 99.14 98.15 95.12 98.63 100.00 100.00 97.96 100.00 NA 97.30 100.00 100.00 100.00 97.44 100.00 100.00 100.00 98.72 100.00 100.00 100.00 100.00 99.04 98.04 100.00 NA 100.00 100.00 100.00 98.86 96.55 98.82 100.00 100.00 NA 100.00 100.00 100.00 100.00 K intron_retention htt,I_chr3R_24527763_24528033,I_chr3R_24542203_24543363 chr3R + chr3R_24553422_24554536 chr3R_24553421_24553422;chr3R_24554536_24554537 chr3R_24553247_24553421;chr3R_24554537_24554771 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 11.54 NA 12.50 0.00 3.28 11.76 5.00 5.00 3.45 0.00 0.00 4.17 NA NA 5.56 6.25 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 6.52 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 NA 0.00 2.44 0.00 0.00 2.70 0.00 K alternative_acceptor CG31108,RI_chr3R_20940642_20940700,CG31510 chr3R - chr3R_20940642_20940700 chr3R_20940646_20940700 chr3R_20940701_20940800;chr3R_20940542_20940641 90.91 NA NA 92.86 NA NA 100.00 66.67 93.33 NA NA 90.00 NA NA NA 87.50 NA NA NA 88.89 NA NA NA NA NA NA 85.71 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 90.91 NA NA NA NA NA NA NA NA NA K jcn_only_AA Dredd,RI_chrX_529342_529426 chrX - chrX_529323_529426 chrX_529342_529426 chrX_529427_529526;chrX_529242_529322 25.75 NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA 43.48 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 18.18 NA NA NA NA NA NA NA NA NA K intron_retention kay,E_chr3R_25616137_25617114 chr3R + chr3R_25616711_25617114 chr3R_25616710_25616711;chr3R_25617114_25617115 chr3R_25616636_25616710;chr3R_25617115_25617214 69.23 NA NA 69.23 NA NA 88.89 69.23 57.14 NA NA 88.24 90.00 90.91 NA NA NA 50.00 72.73 76.47 50.00 30.00 66.67 66.67 NA NA NA 91.67 69.23 NA NA NA NA 90.00 NA NA NA NA 50.00 61.54 NA 76.92 NA NA NA NA NA 72.73 71.43 NA 63.64 NA NA NA NA NA NA NA K intron_retention CG7433 chr3L - chr3L_19992284_19992387 chr3L_19992283_19992284;chr3L_19992387_19992388 chr3L_19991361_19992283;chr3L_19992388_19992550 29.72 NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Yippee,RI_chrX_13280465_13280617 chrX - chrX_13280465_13280621 chrX_13280464_13280465;chrX_13280621_13280622 chrX_13280365_13280464;chrX_13280622_13280717 0.00 0.00 0.00 0.00 0.00 0.00 2.86 2.56 4.62 NA 0.00 0.00 0.00 0.00 0.00 0.00 7.41 0.00 0.00 0.00 0.00 3.92 0.00 0.00 0.00 2.63 5.00 0.00 2.78 0.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 1.49 4.65 0.00 3.51 0.00 4.44 0.00 0.00 0.00 0.00 4.26 0.00 0.00 N intron_retention Rho1,I_chr2R_11990455_11992537,RI_chr2R_11991687_11992537 chr2R + chr2R_11991148_11992537 chr2R_11991147_11991148;chr2R_11992537_11992538 chr2R_11991116_11991147;chr2R_11992538_11992637 100.00 100.00 100.00 98.60 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor Dref chr2L - chr2L_9965316_9965378 chr2L_9965316_9965375 chr2L_9964928_9965315;chr2L_9965379_9965668 100.00 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG15814,I_chrX_17743744_17743940 chrX - chrX_17743088_17743149 chrX_17743087_17743088;chrX_17743149_17743150 chrX_17742852_17743087;chrX_17743150_17743378 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.22 0.00 0.00 0.00 2.90 2.08 0.00 13.89 0.81 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Adar,I_chrX_1668256_1682696,I_chrX_1674594_1674717 chrX + chrX_1675917_1676968 chrX_1675916_1675917;chrX_1676968_1676969 chrX_1675855_1675916;chrX_1676969_1677068 13.81 15.38 10.53 15.79 NA NA NA 22.22 19.05 NA NA NA NA NA NA 12.50 NA 6.67 36.36 0.00 NA NA 11.76 11.11 NA NA NA NA NA NA 11.11 NA NA 25.00 NA 11.76 13.33 NA NA 25.00 NA NA NA NA NA NA 14.29 NA 31.82 NA 12.50 NA NA NA 14.29 NA NA NA K jcn_only_AD CG2906 chr2R + chr2R_3844342_3844402 chr2R_3844346_3844402 chr2R_3844403_3845220;chr2R_3844148_3844341 86.84 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 86.84 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG10660,I_chr3L_12480796_12481182 chr3L - chr3L_12481854_12481927 chr3L_12481875_12481927 chr3L_12481928_12482060;chr3L_12481655_12481853 79.17 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 79.17 K intron_retention CG4644 chr2L - chr2L_1107317_1107372 chr2L_1107316_1107317;chr2L_1107372_1107373 chr2L_1107161_1107316;chr2L_1107373_1107757 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 K alternative_acceptor Spn,I_chr3L_2511764_2512148 chr3L - chr3L_2508866_2509363 chr3L_2508908_2509363 chr3L_2509364_2509500;chr3L_2508639_2508865 23.17 18.92 21.74 44.00 25.00 28.57 33.33 23.08 18.18 15.79 NA 19.51 20.00 19.05 33.33 NA 55.56 46.15 35.71 18.18 23.08 60.00 21.28 23.26 3.23 NA 37.04 63.16 35.29 20.75 20.00 18.52 30.23 22.22 26.09 26.67 24.07 20.00 26.00 32.53 23.08 19.30 20.00 30.56 25.81 31.71 29.63 33.78 20.51 16.67 20.59 19.05 18.18 25.81 25.00 19.35 35.29 18.64 K alternative_last_exon br,I_chrX_1517022_1518170,chrX_1531825_1532171.0,chrX_1532359_1533289.0,chrX_1533577_1534629.0,chrX_1535554_1536485.0,chrX_1539850_1540090.0,chrX_1540212_1541396.0 chrX + chrX_1531368_1548424;chrX_1531368_1537100,chrX_1531368_1536917;chrX_1531368_1552820 chrX_1531368_1541397 chrX_1548425_1550023;chrX_1537101_1539195;chrX_1552821_1559444 chrX_1541398_1544171 chrX_1531317_1531367 13.04 12.73 12.77 12.00 11.90 12.20 11.11 9.76 10.45 15.38 13.04 14.81 16.22 12.00 13.46 13.43 15.62 11.11 11.11 14.41 13.95 25.00 13.21 15.38 14.63 12.82 11.48 25.53 20.75 12.87 9.62 16.22 18.89 8.60 14.06 16.98 16.00 14.29 16.05 16.50 17.07 12.38 11.36 11.54 21.74 15.15 14.89 17.54 12.73 12.68 11.69 11.90 10.94 11.43 12.90 13.64 10.42 8.66 K alternative_acceptor bip2,RI_chr4_481674_487126,RI_chr4_483128_487126,RI_chr4_486609_487126 chr4 - chr4_486609_487126;chr4_485942_487126 chr4_485855_487126 chr4_487127_487226;chr4_485750_485854 5.88 7.14 6.25 9.09 14.29 0.00 7.32 2.78 8.70 14.29 5.56 2.63 0.00 5.00 8.70 6.45 6.25 5.88 5.00 11.76 5.88 NA 5.88 0.00 0.00 9.09 5.88 11.11 0.00 10.00 4.00 NA 0.00 7.50 0.00 0.00 0.00 7.14 0.00 5.00 NA 2.78 0.00 0.00 16.67 10.00 10.00 11.11 10.81 14.29 5.88 7.14 0.00 0.00 4.17 0.00 NA 16.67 N intron_retention CG15211,EF_chrX_10666660_10666923 chrX + chrX_10666660_10671993 chrX_10666659_10666660;chrX_10671993_10671994 chrX_10666577_10666659;chrX_10671994_10672161 100.00 100.00 100.00 76.32 40.00 58.82 100.00 100.00 81.13 13.33 100.00 100.00 100.00 100.00 100.00 77.78 100.00 58.62 72.41 73.85 100.00 100.00 58.82 61.90 33.33 100.00 26.09 37.14 27.08 NA 77.78 100.00 100.00 100.00 NA NA 45.45 40.00 27.27 100.00 NA 85.11 100.00 36.67 64.29 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 55.00 36.36 100.00 K intron_retention CG5287,CG5458 chr2L + chr2L_13179825_13179886 chr2L_13179824_13179825;chr2L_13179886_13179887 chr2L_13179683_13179824;chr2L_13179887_13180100 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 1.87 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 2.70 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5004,E_chrX_17024712_17024996 chrX + chrX_17023319_17024996 chrX_17023318_17023319;chrX_17024996_17024997 chrX_17023183_17023318;chrX_17024997_17025096 18.49 15.00 16.25 18.69 20.63 21.54 25.24 23.14 21.94 14.29 18.99 23.68 20.83 26.87 27.14 22.55 20.59 26.79 28.36 15.58 24.00 16.32 5.29 11.20 18.84 16.90 17.35 16.90 34.48 13.33 25.00 19.05 11.83 18.49 11.40 14.56 11.11 10.26 8.33 14.86 16.38 20.86 26.23 18.09 18.63 17.80 19.80 17.60 19.85 14.29 18.30 12.99 6.93 11.93 24.39 15.38 19.44 20.59 K intron_retention faf,RI_chr3R_27603474_27603893,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27604481_27605081 chr3R_27604480_27604481;chr3R_27605081_27605082 chr3R_27603894_27604480;chr3R_27605082_27605230 0.00 0.00 0.00 2.24 0.00 0.00 0.00 0.78 0.50 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 4.94 1.72 2.74 0.00 2.60 5.13 5.88 3.17 0.00 0.00 8.70 1.77 0.00 0.00 1.37 1.79 0.00 1.83 0.00 0.00 0.00 0.00 3.03 10.53 6.90 10.71 0.00 0.00 0.00 1.12 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention Zasp52,I_chr2R_11661472_11663280,F_chr2R_11662587_11662811,I_chr2R_11690993_11701987 chr2R - chr2R_11662263_11664682 chr2R_11662262_11662263;chr2R_11664682_11664683 chr2R_11661933_11662262;chr2R_11664683_11664791 98.44 96.83 100.00 97.65 100.00 98.00 98.67 98.57 99.17 94.12 97.83 100.00 100.00 97.50 100.00 100.00 100.00 95.35 100.00 98.32 100.00 74.61 96.30 98.75 98.18 96.97 94.94 94.00 98.51 98.73 98.15 100.00 98.44 98.57 100.00 100.00 97.84 98.61 96.63 97.48 97.78 98.90 97.22 99.12 94.64 98.31 100.00 95.45 100.00 93.22 98.85 100.00 100.00 98.11 98.21 97.14 100.00 94.87 K intron_retention CG13630 chr3R - chr3R_20544781_20544849 chr3R_20544780_20544781;chr3R_20544849_20544850 chr3R_20544043_20544780;chr3R_20544850_20545123 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RpL32,I_chr3R_25871509_25871807 chr3R - chr3R_25871509_25871851;chr3R_25871509_25871771;chr3R_25871509_25871611;chr3R_25871509_25871855 chr3R_25871509_25871583 chr3R_25871409_25871508;chr3R_25871856_25871862 1.18 0.84 0.28 0.30 0.34 0.08 0.71 0.40 0.35 2.63 0.28 0.47 0.28 0.35 0.30 0.92 0.23 0.48 0.27 0.24 0.38 3.88 4.85 2.68 1.96 0.42 3.78 3.93 5.30 3.22 0.98 1.35 2.05 0.40 3.56 4.41 1.18 1.92 2.43 1.66 3.20 0.25 0.32 1.75 1.26 2.78 1.18 2.46 0.55 2.14 6.20 2.30 0.77 4.61 0.26 2.81 0.84 1.26 K alternative_acceptor MED1 chr3L - chr3L_21623009_21624032 chr3L_21623014_21624032 chr3L_21624033_21625939;chr3L_21621425_21623008 78.57 64.29 75.00 NA NA 66.67 NA NA 78.57 66.67 NA 81.82 NA NA 55.56 NA NA 77.78 NA 91.67 NA 83.33 90.00 92.86 NA NA 87.50 NA 92.86 94.74 50.00 93.75 76.92 NA 81.82 92.86 81.25 38.10 94.74 77.27 84.62 53.33 NA 69.23 84.62 84.00 80.00 79.55 73.33 75.00 58.82 NA 77.78 66.67 NA 53.33 75.00 81.40 K alternative_donor lt,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22832742_22832804 chr2L_22832746_22832804 chr2L_22832805_22832867;chr2L_22832624_22832741 82.76 86.21 83.78 90.70 81.82 87.50 72.83 86.96 85.14 73.33 91.30 78.00 97.22 83.33 72.97 89.09 92.31 84.38 91.30 92.98 81.82 80.43 77.78 82.76 80.00 74.29 82.14 70.00 59.09 76.67 83.93 77.42 76.92 89.86 96.00 100.00 95.65 76.19 72.00 82.93 70.59 87.10 83.33 92.31 81.08 74.51 91.67 83.33 85.94 79.31 82.05 82.61 73.68 73.68 88.89 76.92 84.91 82.61 K alternative_donor CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20824602_20825271;chr2L_20824725_20825271;chr2L_20824631_20825271 chr2L_20824494_20825271 chr2L_20825272_20825366;chr2L_20824482_20824493 57.14 NA 57.14 64.29 NA NA 55.00 50.00 58.82 NA 75.00 44.44 NA 83.33 NA 66.67 NA 70.00 57.14 52.94 83.33 NA NA NA NA 57.14 NA NA 16.67 25.00 63.64 70.00 56.25 40.00 NA 57.14 NA NA NA 40.91 28.57 83.33 66.67 44.44 84.21 41.67 NA 38.89 60.00 NA NA NA NA NA 55.56 NA NA 8.33 K intron_retention CG10462 chr2L - chr2L_19732465_19732572 chr2L_19732464_19732465;chr2L_19732572_19732573 chr2L_19732184_19732464;chr2L_19732573_19732670 98.55 96.97 95.83 100.00 94.74 100.00 100.00 98.61 100.00 92.31 95.00 100.00 100.00 100.00 96.97 98.57 96.77 100.00 97.67 98.25 100.00 96.43 97.73 100.00 100.00 96.00 100.00 95.45 96.88 97.06 97.50 100.00 100.00 98.61 100.00 100.00 100.00 93.33 95.83 96.97 97.73 100.00 100.00 97.44 100.00 98.36 97.78 98.08 98.55 98.00 97.78 100.00 100.00 96.88 97.14 100.00 100.00 98.75 K jcn_only_AA Mitf,REI_chr4_1223922_1223965,I_chr4_1225890_1225947 chr4 + chr4_1223922_1223985;chr4_1223922_1223965 chr4_1223922_1224042 chr4_1223822_1223921;chr4_1224043_1224065 11.71 NA 12.50 6.67 18.52 29.17 8.89 6.90 12.31 NA 15.38 9.09 3.85 9.52 17.24 11.11 8.82 NA 5.13 11.43 12.00 NA 33.33 NA NA NA 47.83 NA NA NA 22.58 NA 15.00 18.97 NA NA NA NA NA 3.70 NA 13.16 8.00 NA NA NA NA 6.67 8.89 NA NA NA NA NA 13.89 NA NA NA K intron_retention CG1513,I_chr2R_5778649_5778739 chr2R - chr2R_5773018_5773077 chr2R_5773017_5773018;chr2R_5773077_5773078 chr2R_5772866_5773017;chr2R_5773078_5773485 0.00 0.00 0.00 9.09 0.00 2.56 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 2.60 2.94 1.59 2.33 0.00 2.56 3.33 5.75 3.45 0.00 0.00 9.52 0.00 2.25 0.00 0.00 4.65 0.00 3.92 2.90 1.56 5.26 3.12 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 K jcn_only_AA I_chr2R_7479681_7491857,Egm,I_chr2R_7504956_7505020 chr2R - chr2R_7504956_7505020 chr2R_7504960_7505020 chr2R_7505021_7505120;chr2R_7504856_7504955 98.77 98.53 100.00 100.00 100.00 97.83 98.44 98.51 100.00 100.00 97.37 98.86 100.00 97.92 100.00 96.15 100.00 100.00 100.00 99.15 100.00 98.63 100.00 97.30 96.23 98.25 98.84 98.72 100.00 100.00 94.81 98.08 93.88 100.00 98.33 96.61 97.98 98.82 97.90 97.98 94.23 98.68 100.00 100.00 98.88 98.91 100.00 97.37 100.00 98.59 96.55 96.23 98.61 98.77 100.00 98.70 100.00 98.95 K intron_retention CG8331,I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10060189_10060251 chr2R_10060188_10060189;chr2R_10060251_10060252 chr2R_10060120_10060188;chr2R_10060252_10060327 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.88 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Tequila chr3L + chr3L_9083049_9083118 chr3L_9083048_9083049;chr3L_9083118_9083119 chr3L_9082455_9083048;chr3L_9083119_9083510 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 1.96 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG2970,thoc5 chr2R + chr2R_19837446_19837505 chr2R_19837445_19837446;chr2R_19837505_19837506 chr2R_19837238_19837445;chr2R_19837506_19837705 1.89 1.98 2.22 6.19 0.00 0.00 6.48 1.06 0.58 1.82 2.78 0.00 0.00 0.00 2.25 0.00 1.59 0.00 1.59 1.09 1.28 2.75 5.47 3.10 10.84 5.00 4.31 5.26 6.74 2.67 7.06 2.86 0.00 2.04 0.00 5.81 1.60 3.28 1.26 3.23 8.00 2.58 0.00 0.00 2.20 2.61 1.91 1.89 2.29 2.26 1.54 0.00 1.75 0.00 0.00 0.82 0.00 0.00 K intron_retention CG16972 chr2L - chr2L_13198283_13198344 chr2L_13198282_13198283;chr2L_13198344_13198345 chr2L_13197854_13198282;chr2L_13198345_13198543 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 7.69 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 11.76 0.00 5.56 3.23 0.00 NA 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 NA 0.00 0.00 7.41 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 8.33 0.00 0.00 K intron_retention I_chr2L_9944682_9947179,CG13126,I_chr2L_9956225_9956299 chr2L - chr2L_9952699_9952757 chr2L_9952698_9952699;chr2L_9952757_9952758 chr2L_9952068_9952698;chr2L_9952758_9953047 0.00 0.00 NA 12.50 NA NA 4.00 4.17 9.09 NA NA 12.00 NA NA 0.00 13.64 NA 0.00 NA 0.00 NA 6.25 0.00 0.00 NA 0.00 NA 0.00 NA NA NA NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 4.35 NA NA NA NA 0.00 NA 0.00 0.00 6.25 NA 0.00 0.00 NA NA 0.00 NA K intron_retention rump,RI_chr3R_5335093_5335157,I_chr3R_5338175_5338299 chr3R - chr3R_5334152_5335157 chr3R_5334151_5334152;chr3R_5335157_5335158 chr3R_5334013_5334151;chr3R_5335158_5335257 3.17 2.86 0.00 7.89 2.53 3.23 8.24 3.48 3.24 1.59 1.67 5.71 5.56 3.66 1.32 6.19 5.88 0.00 2.63 4.44 6.35 4.58 2.78 3.61 6.90 0.00 6.45 6.02 2.44 3.60 2.90 5.21 3.17 5.63 2.41 6.06 0.00 0.00 0.00 2.75 4.24 1.81 2.44 5.97 0.00 2.16 1.47 3.26 4.27 3.28 3.79 2.41 1.54 2.00 2.04 2.44 0.00 4.23 K alternative_donor sec24,I_chr2R_5768722_5769689 chr2R - chr2R_5768722_5769384;chr2R_5768722_5769689 chr2R_5768722_5769687 chr2R_5768622_5768721;chr2R_5769690_5769789 94.74 100.00 96.43 93.10 100.00 90.91 95.92 97.96 90.91 90.91 77.27 90.48 96.55 97.22 90.91 89.80 96.97 87.50 91.43 94.74 87.50 95.92 94.74 90.00 97.78 100.00 90.57 92.11 95.83 96.15 97.83 94.74 96.43 98.00 94.74 94.74 95.00 92.00 92.86 98.65 100.00 94.83 86.84 90.91 82.35 96.88 91.30 91.67 90.91 89.66 91.78 96.15 96.00 100.00 90.20 95.45 92.00 100.00 N intron_retention CG6293,Bruce chr3R - chr3R_6136241_6136995 chr3R_6136240_6136241;chr3R_6136995_6136996 chr3R_6135621_6136240;chr3R_6136996_6137061 6.25 NA NA NA NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG1161,I_chr3R_1182079_1182146 chr3R + chr3R_1182079_1182146 chr3R_1182078_1182079;chr3R_1182146_1182147 chr3R_1181979_1182078;chr3R_1182147_1182246 77.78 NA NA NA NA NA NA 70.00 77.78 NA NA 63.64 NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA 77.78 NA NA NA NA NA NA NA NA NA NA NA 73.91 NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 88.89 K alternative_acceptor Gs2 chrX + chrX_11318137_11318297;chrX_11318137_11318314 chrX_11318137_11318302 chrX_11318068_11318136;chrX_11318315_11318487 100.00 100.00 100.00 100.00 NA 100.00 87.50 90.00 95.00 92.86 NA 96.00 100.00 NA 100.00 100.00 NA NA 100.00 93.33 100.00 98.41 100.00 100.00 100.00 100.00 100.00 96.00 95.65 100.00 100.00 100.00 91.67 100.00 100.00 94.74 100.00 100.00 92.31 100.00 100.00 100.00 NA 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 88.89 100.00 NA K mutually_exclusive Nup153,I_chrX_16495232_16495296 chrX + chrX_16500042_16501965,chrX_16502034_16503037 chrX_16500042_16500894,chrX_16501033_16503037 chrX_16501966_16502033 chrX_16500895_16501032 chrX_16499883_16500041;chrX_16503038_16504371 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 K intron_retention Tif-IA,RI_chr2L_22250854_22257652 chr2L + chr2L_22250854_22257652 chr2L_22250853_22250854;chr2L_22257652_22257653 chr2L_22250754_22250853;chr2L_22257653_22257752 0.00 NA NA 0.00 NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD larp,F_chr3R_24151542_24153876,I_chr3R_24160430_24160932,I_chr3R_24160430_24160971,RI_chr3R_24160430_24161527 chr3R - chr3R_24160430_24161729;chr3R_24160430_24160932;chr3R_24160430_24160971;chr3R_24160430_24160975;chr3R_24160430_24161939;chr3R_24160430_24161527 chr3R_24160430_24160979 chr3R_24160330_24160429;chr3R_24161940_24162125 14.77 21.05 17.45 12.08 19.05 20.79 13.02 12.28 14.77 12.36 16.09 13.33 12.90 12.00 11.36 12.17 10.42 11.63 13.50 17.44 17.59 9.56 13.79 18.12 22.99 15.24 13.38 9.52 14.29 17.65 11.19 10.87 12.44 9.66 17.70 18.49 18.31 16.04 12.69 14.29 17.28 15.75 14.39 15.44 18.18 17.27 15.56 16.37 18.10 13.46 17.75 12.37 17.17 13.46 10.23 23.81 19.75 23.49 K alternative_acceptor cwo,noncoding_15870,chr3R_6215619_6216520.0,chr3R_6216827_6217291.0,chr3R_6217556_6219555.0,chr3R_6219984_6221958.0 chr3R + chr3R_6215160_6222426;chr3R_6215160_6222423 chr3R_6215160_6222418 chr3R_6214846_6215159;chr3R_6222427_6222542 93.75 83.33 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 100.00 85.71 NA 81.82 NA NA 100.00 85.71 NA 93.75 92.86 100.00 80.00 NA 92.31 70.00 100.00 100.00 83.33 85.71 100.00 90.00 100.00 100.00 100.00 83.33 83.33 91.67 87.50 88.89 NA 83.33 NA NA NA 100.00 100.00 88.89 100.00 100.00 NA NA 100.00 NA NA 92.31 K intron_retention CG3635 chr2L + chr2L_22183467_22183527 chr2L_22183466_22183467;chr2L_22183527_22183528 chr2L_22183394_22183466;chr2L_22183528_22183915 14.06 14.89 15.00 25.00 26.09 14.29 7.06 13.11 18.09 25.71 8.82 10.43 17.86 14.58 18.37 23.33 20.00 9.09 10.42 14.17 10.87 13.13 18.37 11.54 17.74 11.43 32.08 41.67 14.89 18.03 2.96 6.03 10.66 14.67 9.80 17.33 21.31 21.15 14.49 8.74 13.46 16.84 14.81 7.37 7.96 9.04 8.08 9.79 12.39 14.00 9.76 8.51 10.34 14.06 14.81 11.48 19.67 9.02 K alternative_donor CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516706_21517821;chr3L_21516330_21517821;chr3L_21516399_21517821;chr3L_21517168_21517821;chr3L_21516722_21517821;chr3L_21516501_21517821;chr3L_21516343_21517821;chr3L_21516728_21517821 chr3L_21516918_21517821 chr3L_21517822_21517920;chr3L_21516311_21516329 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,I_chr2R_20289332_20290093 chr2R - chr2R_20283680_20283755 chr2R_20283699_20283755 chr2R_20283756_20283824;chr2R_20283566_20283679 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.16 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG31751,RI_chr2L_18677473_18677932 chr2L + chr2L_18679162_18682264 chr2L_18679161_18679162;chr2L_18682264_18682265 chr2L_18678839_18679161;chr2L_18682265_18682389 11.76 NA 9.52 13.79 NA 11.76 20.00 11.54 7.41 NA 20.00 18.52 NA NA 14.29 24.14 NA NA 10.53 25.93 NA NA 9.52 5.88 NA 10.53 NA NA 4.76 0.00 13.04 16.67 0.00 17.39 NA NA 15.79 NA 13.33 6.45 15.00 3.45 10.53 NA 12.50 15.38 NA 15.79 6.90 NA 8.00 NA NA NA 6.25 NA 14.29 6.25 K intron_retention mts,RI_chr2L_7828959_7830461 chr2L + chr2L_7831660_7831733 chr2L_7831659_7831660;chr2L_7831733_7831734 chr2L_7831469_7831659;chr2L_7831734_7832741 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.60 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor LIMK1,I_chrX_12488942_12489000 chrX - chrX_12484518_12486000;chrX_12484518_12486079 chrX_12484518_12485963 chrX_12483874_12484517;chrX_12486080_12486162 79.41 72.22 85.71 72.73 85.71 73.68 84.00 82.86 72.73 87.50 71.43 84.62 68.75 69.57 83.33 79.41 81.82 77.27 80.00 73.91 80.95 61.54 84.21 82.61 66.67 80.00 85.71 88.89 74.29 73.33 75.86 83.33 69.39 84.62 80.00 74.07 87.88 87.50 77.27 85.37 80.00 64.58 73.33 88.46 88.89 82.35 75.00 76.67 78.38 75.00 80.00 75.00 72.73 77.78 77.78 76.92 81.82 84.00 K alternative_donor F_chr2L_15260838_15261717,cul-3 chr2L - chr2L_15271144_15271833;chr2L_15271144_15271202 chr2L_15271144_15271322 chr2L_15270905_15271143;chr2L_15271834_15271894 9.62 12.82 12.50 5.61 12.50 10.53 7.69 7.22 9.91 6.67 3.12 6.73 5.66 6.67 5.00 10.47 7.84 11.11 6.06 4.44 6.67 11.36 10.94 7.14 9.38 4.76 11.86 32.14 40.48 10.42 9.62 31.58 20.59 7.92 9.09 14.71 10.81 5.71 7.32 14.75 16.67 8.08 6.52 7.27 9.52 20.00 10.71 20.45 4.59 13.51 12.73 5.00 22.22 5.26 7.94 10.34 14.81 21.43 K intron_retention CG2034 chr3L + chr3L_2257803_2257871 chr3L_2257802_2257803;chr3L_2257871_2257872 chr3L_2257629_2257802;chr3L_2257872_2258517 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 K intron_retention wdb,I_chr3R_23394314_23406731,I_chr3R_23394314_23406794,I_chr3R_23394314_23407159,RI_chr3R_23394314_23407186,I_chr3R_23394314_23407412,I_chr3R_23394314_23407715,I_chr3R_23394314_23407721,RI_chr3R_23406048_23406731,RI_chr3R_23406048_23406794,I_chr3R_23406048_23406928,RI_chr3R_23406048_23407402 chr3R - chr3R_23394314_23406865 chr3R_23394313_23394314;chr3R_23406865_23406866 chr3R_23394214_23394313;chr3R_23406866_23406894 36.36 NA NA 36.36 NA NA 22.22 46.15 52.63 NA NA 63.64 NA NA NA 36.36 NA NA 36.36 26.09 NA 34.78 NA NA NA NA NA NA 33.33 NA 14.29 NA 25.00 50.00 NA NA NA NA NA 38.46 NA 43.75 NA NA NA NA NA 23.08 25.00 NA 36.36 NA NA NA NA NA NA NA K mutually_exclusive CG5191,E_chr3R_16391739_16398166,CG5412 chr3R + chr3R_16387022_16392150,chr3R_16392332_16396323 chr3R_16387022_16387078,chr3R_16387134_16396323 chr3R_16392151_16392331 chr3R_16387079_16387133 chr3R_16386919_16387021;chr3R_16396324_16396371 75.00 NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG31140,I_chr3R_19798250_19798756,F_chr3R_19799277_19802225 chr3R + chr3R_19798250_19798756 chr3R_19798250_19798330;chr3R_19798434_19798756 chr3R_19798331_19798433 chr3R_19798202_19798249;chr3R_19798757_19798856 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention CG5446,I_chr2L_12427370_12427468 chr2L - chr2L_12427388_12427468 chr2L_12427387_12427388;chr2L_12427468_12427469 chr2L_12426802_12427387;chr2L_12427469_12427568 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.55 0.53 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.33 0.00 0.00 0.23 0.00 K alternative_donor CG31531,I_chr3R_485548_485960,I_chr3R_485608_485960,noncoding_14584,I_chr3R_486122_506500,I_chr3R_496573_505950,I_chr3R_523978_526879 chr3R + chr3R_485616_485960;chr3R_485608_485960 chr3R_485399_485960 chr3R_485961_486060;chr3R_485382_485398 6.25 9.52 4.76 3.33 0.00 5.00 12.50 17.65 4.17 6.25 0.00 11.63 5.56 4.76 0.00 15.62 4.76 NA 3.85 2.94 NA 19.05 15.62 17.39 7.14 5.56 3.45 15.79 5.26 5.00 11.11 0.00 14.29 3.57 10.00 5.26 8.57 14.29 3.70 9.09 0.00 8.11 5.88 3.45 NA 7.69 9.09 3.57 7.69 12.50 8.82 10.00 NA NA 3.70 NA 10.00 12.50 K intron_retention HP5 chrX + chrX_11349011_11349092 chrX_11349010_11349011;chrX_11349092_11349093 chrX_11348866_11349010;chrX_11349093_11349224 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 NA 100.00 100.00 94.44 94.12 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 95.45 94.74 100.00 100.00 100.00 90.91 NA 100.00 95.24 NA 100.00 96.55 100.00 93.75 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 95.65 100.00 NA NA 100.00 100.00 100.00 NA K cassette X11Lbeta chrX + chrX_10595155_10596486 chrX_10595155_10595836;chrX_10596035_10596486 chrX_10595837_10596034 chrX_10595038_10595154;chrX_10596487_10596805 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention I_chr2R_5999081_6000140,E_chr2R_6001157_6001630,CG11866 chr2R + chr2R_6007233_6007296 chr2R_6007232_6007233;chr2R_6007296_6007297 chr2R_6006984_6007232;chr2R_6007297_6007495 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor noncoding_4261 chr2L + chr2L_21930695_21930858 chr2L_21930695_21930816 chr2L_21930327_21930694;chr2L_21930859_21930947 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention p53,CG17119,sav chr3R - chr3R_18878771_18878840 chr3R_18878770_18878771;chr3R_18878840_18878841 chr3R_18878767_18878770;chr3R_18878841_18878877 7.42 NA NA NA NA NA 30.77 NA 11.11 NA NA NA NA NA NA NA NA NA NA 6.25 NA NA NA NA 23.08 NA 0.00 NA NA NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 7.69 NA K alternative_donor rudimentary,I_chrX_16559455_16560067,I_chrX_16561903_16561969 chrX + chrX_16559361_16560067 chrX_16559455_16560067 chrX_16560068_16560167;chrX_16559355_16559360 3.28 1.92 2.33 2.78 3.23 4.88 5.13 6.52 5.48 2.17 6.67 8.77 6.25 3.12 8.33 4.55 3.23 6.67 12.00 3.19 4.35 2.97 2.15 2.30 2.27 7.14 1.89 5.66 18.92 7.46 18.92 2.22 3.36 5.08 6.38 3.92 2.15 5.56 2.83 3.85 3.23 4.21 0.00 0.00 3.28 2.04 3.12 6.90 4.84 4.17 2.22 0.00 1.52 3.12 2.13 5.00 1.98 1.19 K alternative_acceptor CG9293,RI_chr2L_13386386_13386487,I_chr2L_13394941_13395015 chr2L - chr2L_13386688_13386756 chr2L_13386691_13386756 chr2L_13386757_13386818;chr2L_13386624_13386687 100.00 95.00 100.00 100.00 94.74 100.00 100.00 100.00 96.30 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 95.83 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 96.97 100.00 100.00 95.24 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG10249,I_chr2R_10790537_10790639 chr2R - chr2R_10789909_10790015 chr2R_10789909_10790011 chr2R_10789708_10789908;chr2R_10790016_10790228 0.00 0.00 0.00 3.33 5.88 0.00 0.00 0.00 4.76 NA 0.00 2.38 0.00 0.00 0.00 0.00 5.00 0.00 NA 3.45 0.00 8.57 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 4.76 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 2.22 NA 0.00 0.00 0.00 0.00 7.69 3.92 0.00 0.00 0.00 2.86 0.00 3.45 3.33 0.00 0.00 K intron_retention CG14709,F_chr3R_7396835_7396923,F_chr3R_7405343_7405539 chr3R + chr3R_7395557_7396748 chr3R_7395556_7395557;chr3R_7396748_7396749 chr3R_7394972_7395556;chr3R_7396749_7396834 4.67 2.70 5.71 6.25 3.03 1.64 14.73 4.07 5.52 4.08 2.74 6.02 6.35 6.06 6.41 4.88 3.61 2.78 2.60 4.12 4.48 8.45 3.74 4.76 7.14 1.52 5.68 7.55 8.16 6.78 5.26 7.41 5.13 4.59 0.00 0.00 3.19 2.82 5.63 3.85 8.33 4.58 2.04 4.81 7.69 5.00 2.50 7.27 5.41 4.44 4.44 5.80 NA 0.00 2.30 5.56 0.00 0.00 K intron_retention RpS25,I_chr3R_7041333_7041414,I_chr3R_7041347_7041413,I_chr3R_7041347_7041556,RI_chr3R_7044164_7044221 chr3R - chr3R_7041347_7041414 chr3R_7041346_7041347;chr3R_7041414_7041415 chr3R_7041267_7041346;chr3R_7041415_7041483 0.01 0.00 0.00 0.02 0.03 0.00 0.00 0.01 0.01 0.02 0.03 0.02 0.00 0.03 0.03 0.00 0.01 0.00 0.03 0.02 0.00 0.00 0.02 0.01 0.00 0.01 0.06 0.49 0.01 0.02 0.01 0.00 0.00 0.02 0.00 0.00 0.01 0.00 0.00 0.01 0.00 0.03 0.00 0.00 0.00 0.02 0.00 0.00 0.01 0.03 0.01 0.00 0.01 0.00 0.00 0.02 0.03 0.00 K intron_retention CG13384 chr2L + chr2L_8387379_8387658 chr2L_8387378_8387379;chr2L_8387658_8387659 chr2L_8386487_8387378;chr2L_8387659_8387831 0.23 0.19 0.00 1.39 0.48 0.00 0.40 0.30 0.26 0.26 0.50 0.29 0.00 0.31 0.42 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.23 0.41 0.00 0.60 0.77 1.12 0.42 0.62 0.27 0.34 0.00 0.00 0.00 0.00 0.36 0.20 0.27 0.24 0.30 0.00 0.00 0.00 0.23 0.00 0.00 0.38 0.00 0.13 0.25 0.00 0.00 0.20 0.00 0.30 0.00 K intron_retention bbc,REI_chr2R_9379401_9381986 chr2R - chr2R_9377379_9378939 chr2R_9377378_9377379;chr2R_9378939_9378940 chr2R_9377313_9377378;chr2R_9378940_9379098 98.09 100.00 96.88 97.44 100.00 100.00 100.00 100.00 98.53 100.00 96.30 98.04 100.00 100.00 100.00 98.11 100.00 95.00 97.30 98.08 100.00 100.00 98.00 100.00 95.24 94.44 97.37 100.00 96.00 96.00 96.88 100.00 100.00 98.18 94.12 95.24 100.00 100.00 100.00 95.45 NA 97.83 100.00 100.00 NA 93.33 91.67 100.00 98.08 100.00 96.77 96.30 90.91 NA 100.00 93.75 93.75 92.86 K jcn_only_AD CG4699 chr3R + chr3R_11619752_11620550;chr3R_11619772_11620550;chr3R_11619570_11620550;chr3R_11619776_11620550 chr3R_11619676_11620550 chr3R_11620551_11621301;chr3R_11619539_11619569 64.69 48.48 76.47 79.10 58.62 65.85 60.42 87.69 66.67 21.74 65.38 81.33 76.92 67.50 72.34 86.76 73.33 85.00 69.57 60.53 64.00 72.34 62.65 62.75 52.94 76.67 59.38 58.33 70.83 59.38 82.61 NA 45.95 66.67 74.47 77.78 50.00 67.57 61.29 59.68 60.00 63.38 82.61 59.26 51.85 47.73 88.46 53.33 78.65 40.62 70.59 71.79 60.00 31.03 75.00 58.06 44.00 57.14 K cassette Arp14D,RI_chrX_16444583_16446372,I_chrX_16444630_16446372,RE_chrX_16445264_16446372 chrX - chrX_16444499_16446372 chrX_16444499_16445507;chrX_16445523_16446372 chrX_16445508_16445522 chrX_16444483_16444498;chrX_16446373_16446472 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD plexA,RI_chr4_1036247_1047588,RI_chr4_1040642_1047395,RI_chr4_1044307_1046841,RF_chr4_1044307_1047399 chr4 - chr4_1044307_1047395;chr4_1044307_1047588 chr4_1044307_1047399 chr4_1044207_1044306;chr4_1047589_1047625 13.69 NA NA 21.43 NA NA 16.00 17.65 16.07 NA NA 8.11 4.35 19.05 NA 15.38 NA NA 12.00 9.38 NA 0.00 16.00 NA NA NA NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA NA 20.69 NA NA NA NA NA NA 3.85 NA 0.00 NA NA NA NA NA NA NA K intron_retention CG5384 chr2L - chr2L_10313028_10313083 chr2L_10313027_10313028;chr2L_10313083_10313084 chr2L_10312962_10313027;chr2L_10313084_10313240 1.65 6.06 0.00 1.65 1.67 7.02 2.73 3.82 1.34 0.00 0.00 5.26 0.00 2.60 2.99 2.31 2.44 0.00 4.04 4.38 0.00 0.00 0.00 0.00 0.00 8.00 0.00 2.70 9.30 0.00 6.67 0.00 0.00 1.60 0.00 3.77 4.84 0.00 0.00 2.20 3.03 2.50 5.63 2.27 2.94 1.01 0.00 1.52 2.26 0.00 0.00 0.00 0.00 1.85 2.04 4.88 0.00 0.00 K alternative_donor CG5706,I_chr3R_20078025_20078083 chr3R - chr3R_20078025_20078087 chr3R_20078025_20078083 chr3R_20077925_20078024;chr3R_20078088_20078118 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA noncoding_7373,REI_chr2R_12706037_12706094 chr2R - chr2R_12706006_12706094 chr2R_12706037_12706094 chr2R_12706095_12706194;chr2R_12705937_12706005 17.24 NA NA NA NA NA NA NA NA NA NA 17.24 NA NA NA NA NA 18.75 NA NA NA NA NA NA NA NA NA NA NA NA 6.90 NA NA NA NA NA NA NA NA 4.35 NA NA NA 19.05 17.39 NA NA NA NA NA NA NA NA NA NA NA NA 10.00 K intron_retention CG5191,E_chr3R_16391739_16398166,CG5412 chr3R + chr3R_16387022_16387078 chr3R_16387021_16387022;chr3R_16387078_16387079 chr3R_16386919_16387021;chr3R_16387079_16387133 36.36 NA NA NA NA NA NA NA 23.53 NA NA NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA K intron_retention Dp1 chr2R + chr2R_14299562_14300506 chr2R_14299561_14299562;chr2R_14300506_14300507 chr2R_14299526_14299561;chr2R_14300507_14300582 18.75 NA NA 0.00 NA NA 33.33 9.09 18.75 NA NA 18.75 NA NA NA 25.00 NA NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA 23.53 NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA 10.34 NA NA NA NA NA NA NA NA NA K alternative_acceptor I_chr2L_114992_156735,RI_chr2L_114992_155545,RI_chr2L_114992_155566,I_chr2L_114992_155637,I_chr2L_114992_156175,RI_chr2L_155430_155637,CG11455,CG3436 chr2L + chr2L_155430_155566;chr2L_155430_155637 chr2L_155430_155493 chr2L_155424_155429;chr2L_155638_155645 7.09 9.09 6.56 12.12 12.73 10.34 9.64 6.45 7.09 8.11 8.16 6.25 7.41 5.17 6.67 5.15 11.11 11.59 4.55 9.09 13.64 5.26 7.50 7.95 9.30 13.79 13.43 9.09 10.26 6.82 5.48 6.38 6.98 7.53 6.52 15.79 6.17 7.14 4.30 4.30 15.15 9.17 7.14 5.06 6.25 7.61 5.38 8.51 4.12 6.94 6.94 4.92 4.76 6.74 8.64 6.25 5.88 6.25 N cassette JhI-21,I_chr2L_12055360_12055714 chr2L - chr2L_12052504_12052763 chr2L_12052504_12052559;chr2L_12052685_12052763 chr2L_12052560_12052684 chr2L_12051752_12052503;chr2L_12052764_12053088 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Incenp,I_chr2R_3167836_3167975 chr2R + chr2R_3167832_3167978 chr2R_3167831_3167832;chr2R_3167978_3167979 chr2R_3167736_3167831;chr2R_3167979_3168075 25.00 NA 0.00 NA NA NA NA 20.83 25.00 NA NA NA NA NA NA NA NA NA NA 31.82 NA NA 23.08 41.18 NA 41.67 33.33 NA NA 46.15 NA 30.77 NA NA NA NA 25.00 NA 28.57 25.00 NA NA NA NA 0.00 NA NA 6.67 NA 29.41 33.33 NA NA NA 0.00 NA NA 0.00 K jcn_only_AA Syx4,I_chrX_2635555_2635621,I_chrX_2636831_2636971 chrX - chrX_2635530_2635621 chrX_2635555_2635621 chrX_2635622_2635721;chrX_2635456_2635529 9.80 11.11 13.79 1.96 4.44 2.33 15.38 11.70 14.02 NA 14.71 13.46 3.85 5.56 7.84 7.14 9.80 9.30 18.31 8.33 12.50 22.50 11.76 5.13 NA 14.29 8.57 NA NA 8.57 20.00 11.63 11.76 9.21 19.44 NA 9.76 10.00 11.11 9.09 9.62 8.08 15.38 6.90 6.56 7.79 11.54 8.93 12.75 13.85 15.22 0.00 NA 9.09 8.06 6.82 14.29 13.89 K jcn_only_AA cnn,I_chr2R_9330634_9331165,I_chr2R_9331192_9331257,I_chr2R_9333096_9336812,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9330664_9331932;chr2R_9331848_9331932 chr2R_9330634_9331932 chr2R_9331933_9332199 98.82 100.00 98.51 93.42 98.51 98.59 94.74 98.84 100.00 96.00 100.00 100.00 100.00 97.83 98.63 96.77 100.00 97.73 100.00 99.17 100.00 95.83 100.00 100.00 96.88 98.46 97.67 98.18 97.56 100.00 98.63 100.00 97.54 98.82 98.21 89.29 100.00 100.00 98.75 100.00 96.30 99.28 98.18 98.25 100.00 98.08 100.00 97.37 100.00 100.00 100.00 97.06 100.00 100.00 98.65 100.00 100.00 100.00 K jcn_only_AA mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818607_7818970;chr3R_7818575_7818970 chr3R_7818597_7818970 chr3R_7818971_7818995;chr3R_7818507_7818574 30.65 35.56 35.25 34.19 37.69 23.38 18.75 29.66 35.52 34.48 34.07 29.17 30.87 35.29 33.59 31.14 35.06 30.65 28.22 26.49 34.88 27.87 25.29 22.95 25.71 33.79 35.29 24.19 26.83 30.65 34.23 17.78 25.69 32.28 14.29 22.22 31.25 32.35 17.14 33.16 25.93 30.66 37.39 31.46 16.44 29.89 23.08 22.54 33.47 27.27 31.63 25.33 20.00 36.67 32.09 28.57 24.24 25.58 K intron_retention CG5028 chr3R + chr3R_21509106_21509194 chr3R_21509105_21509106;chr3R_21509194_21509195 chr3R_21508780_21509105;chr3R_21509195_21509414 0.00 0.00 0.00 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 3.08 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 3.45 0.00 0.00 5.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention F_chr2R_18548367_18550224,R_chr2R_18548408_18548573,CG42566,I_chr2R_18551419_18551493 chr2R + chr2R_18549542_18550224 chr2R_18549541_18549542;chr2R_18550224_18550225 chr2R_18549476_18549541;chr2R_18550225_18550324 12.50 9.68 NA NA NA NA NA 13.16 20.83 NA NA 10.71 0.00 25.00 9.52 33.33 14.29 NA 12.50 13.51 NA NA 0.00 8.70 NA NA NA NA NA NA 11.76 23.08 30.77 16.67 NA NA 20.83 0.00 0.00 15.38 NA 20.00 NA 14.81 NA 6.06 NA 0.00 13.79 20.00 7.14 8.70 7.69 11.11 0.00 14.29 18.52 9.68 K intron_retention CG10898,I_chr3R_7384087_7384155 chr3R + chr3R_7384407_7384478 chr3R_7384406_7384407;chr3R_7384478_7384479 chr3R_7384156_7384406;chr3R_7384479_7385368 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 5.88 NA 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention del chr2L - chr2L_21147824_21147889 chr2L_21147823_21147824;chr2L_21147889_21147890 chr2L_21146949_21147823;chr2L_21147890_21148136 83.24 91.67 91.67 91.18 70.00 84.62 76.32 86.05 86.36 NA 60.00 82.05 65.52 82.61 70.59 83.87 80.00 90.00 86.96 68.97 58.33 66.67 78.95 78.95 73.33 92.86 81.82 87.50 66.67 88.89 85.71 NA 90.00 87.18 90.00 80.00 66.67 NA NA 85.00 88.89 82.14 85.71 80.00 NA NA 73.33 88.89 86.67 NA 76.00 84.62 NA NA 92.00 NA 72.73 NA K cassette CG32264,RI_chr3L_3769407_3803313 chr3L - chr3L_3722523_3723638 chr3L_3722523_3722859;chr3L_3723106_3723638 chr3L_3722860_3723105 chr3L_3722156_3722522;chr3L_3723639_3723872 80.00 80.00 78.79 75.68 91.67 79.41 50.00 73.17 72.97 77.50 64.00 64.18 73.68 74.07 85.19 100.00 72.41 73.08 85.19 71.25 70.97 87.65 75.68 81.82 68.89 80.77 84.44 89.06 84.44 86.96 80.00 87.88 85.71 86.36 78.72 49.23 90.14 78.57 72.09 88.00 62.75 80.28 68.00 80.85 82.14 82.69 83.67 90.00 77.97 84.44 73.77 83.87 78.05 66.00 73.91 81.40 83.78 95.24 K alternative_acceptor CG4980 chr3R - chr3R_23747816_23747920 chr3R_23747854_23747920 chr3R_23747921_23748082;chr3R_23746995_23747815 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 97.56 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 97.62 96.30 100.00 100.00 53.33 100.00 100.00 92.86 100.00 100.00 100.00 97.06 100.00 97.14 100.00 100.00 100.00 98.57 97.56 100.00 96.15 98.72 100.00 97.67 98.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5987603_5991760,I_chr2R_5988662_5991760,I_chr2R_5988666_5991760,I_chr2R_5988919_5991760,I_chr2R_5988931_5991760,I_chr2R_5990647_5991760,I_chr2R_5991249_5991760,I_chr2R_5991689_5991760,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5987356_5991760;chr2R_5987244_5991760 chr2R_5987237_5991760 chr2R_5991761_5991860;chr2R_5987235_5987236 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.23 0.00 0.00 0.11 0.00 0.29 0.16 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.54 0.00 0.47 0.00 0.10 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 K multi_cassette Xrp1,I_chr3R_14741648_14750799,I_chr3R_14750298_14750799 chr3R + chr3R_14744348_14750799 chr3R_14744348_14745144;chr3R_14745235_14746134;chr3R_14747042_14750799 chr3R_14745145_14745234;chr3R_14746135_14747041 chr3R_14744211_14744347;chr3R_14750800_14750899 98.84 98.28 98.15 99.11 97.44 100.00 98.02 98.89 96.36 100.00 100.00 98.89 100.00 97.96 98.08 96.15 97.83 97.62 98.15 98.90 97.67 99.56 99.34 99.07 97.96 96.49 98.54 99.37 93.48 98.86 99.16 100.00 100.00 98.84 100.00 98.94 98.94 100.00 99.01 98.46 98.75 98.99 97.56 99.14 98.21 98.84 98.46 100.00 98.86 99.04 99.15 98.59 97.22 98.15 98.39 98.61 98.70 97.92 K alternative_donor CG12576,RI_chrX_21878289_21882347,I_chrX_21882735_21882809,I_chrX_21882735_21883407,I_chrX_21882735_21883467,I_chrX_21882735_21883620,I_chrX_21882735_21883714 chrX - chrX_21882735_21882809;chrX_21882735_21883467;chrX_21882735_21883750 chrX_21882735_21883714 chrX_21882635_21882734;chrX_21883751_21883814 0.00 0.00 0.00 1.83 0.00 0.00 4.17 0.00 0.00 0.00 0.00 1.06 1.67 1.61 0.00 1.10 0.00 0.00 1.39 1.16 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 1.35 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 1.59 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD l(2)k01209,I_chr2R_13308079_13310771,I_chr2R_13309452_13310771,RI_chr2R_13310877_13311160 chr2R + chr2R_13309417_13311160;chr2R_13309452_13311160;chr2R_13308486_13311160 chr2R_13308079_13311160 chr2R_13311161_13311260;chr2R_13307979_13308078 40.59 35.10 36.94 37.50 31.82 51.65 31.02 50.81 33.20 32.95 44.74 42.21 30.38 40.28 45.26 34.03 50.94 47.56 35.79 32.44 41.05 47.24 38.25 35.84 41.67 38.89 34.72 54.72 34.07 42.95 30.97 40.59 60.48 41.38 48.25 43.38 27.38 40.83 32.75 49.06 55.56 39.77 34.72 29.76 39.53 46.09 44.92 41.35 40.83 31.87 47.69 37.89 41.58 34.17 42.86 43.28 38.00 56.57 K jcn_only_AA I_chr3R_23069667_23070365,CG5987 chr3R - chr3R_23074201_23074263 chr3R_23074218_23074263 chr3R_23074264_23074804;chr3R_23074073_23074200 1.90 NA 0.00 0.93 NA NA NA 2.13 4.55 NA NA NA NA NA NA 2.56 NA NA NA 0.00 NA 3.70 2.00 NA NA NA NA NA 3.45 6.06 NA 1.72 1.79 NA 4.76 NA 0.00 NA 0.00 0.00 0.00 5.56 NA NA 0.00 0.00 0.00 2.13 2.33 2.44 NA NA 10.00 0.00 0.00 2.63 3.45 0.00 K cassette Spase18-21,I_chr3R_2483820_2484724 chr3R + chr3R_2483820_2484724 chr3R_2483820_2483889;chr3R_2484150_2484724 chr3R_2483890_2484149 chr3R_2483720_2483819;chr3R_2484725_2484824 99.46 99.68 99.57 99.17 99.49 99.51 99.18 98.63 99.09 99.63 100.00 99.31 99.01 100.00 99.64 99.54 99.37 98.55 100.00 99.81 99.49 98.09 99.46 99.53 99.13 99.53 99.04 99.55 99.62 99.16 99.51 99.27 99.34 99.67 99.47 98.81 99.46 99.66 99.29 98.90 98.94 99.33 99.41 99.63 99.76 99.04 98.60 99.66 99.74 99.45 99.32 99.45 100.00 99.13 99.59 99.07 99.75 100.00 K jcn_only_AA RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817 chr2R + chr2R_15330246_15330292;chr2R_15330246_15330317 chr2R_15330246_15330305 chr2R_15330177_15330245;chr2R_15330318_15330383 99.97 99.97 99.96 99.99 99.96 99.97 99.98 99.98 99.99 99.88 99.98 99.99 99.96 100.00 99.99 100.00 99.98 99.99 99.98 99.96 99.92 99.95 99.96 99.97 99.96 99.98 99.95 100.00 99.93 99.96 99.74 100.00 99.92 99.97 99.94 99.92 99.99 99.97 99.96 99.94 99.91 100.00 100.00 99.99 99.97 99.95 99.97 99.96 99.99 99.97 99.98 100.00 99.98 99.96 99.96 99.97 99.98 99.95 N intron_retention CG33936,CG33937,RI_chr3R_5183458_5183705 chr3R + chr3R_5183178_5183705 chr3R_5183177_5183178;chr3R_5183705_5183706 chr3R_5183133_5183177;chr3R_5183706_5183805 7.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA RI_chrX_8468338_8469380,I_chrX_8468338_8477573,CG12065,CE_chrX_8469528_8477573 chrX + chrX_8468441_8469386;chrX_8468441_8469380 chrX_8468441_8469383 chrX_8468351_8468440;chrX_8469387_8469480 40.95 40.16 41.67 44.63 52.10 43.40 32.68 45.78 38.81 32.99 37.27 40.38 51.02 45.24 37.01 47.37 38.28 38.04 43.88 46.32 39.82 49.07 37.99 45.55 47.25 37.72 45.74 38.27 33.33 45.12 39.53 39.08 45.87 40.95 47.06 49.51 46.15 46.27 49.61 39.74 36.67 41.34 45.30 36.13 40.48 48.97 45.05 38.10 36.24 43.33 41.81 40.49 38.10 37.50 40.82 39.72 40.58 42.29 K intron_retention CG10249,I_chr2R_10790537_10790639 chr2R - chr2R_10793459_10793522 chr2R_10793458_10793459;chr2R_10793522_10793523 chr2R_10793019_10793458;chr2R_10793523_10793562 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor sax chr2R + chr2R_3694707_3695073 chr2R_3694857_3695073 chr2R_3695074_3695149;chr2R_3694577_3694706 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG1621,noncoding_4901 chr2R - chr2R_3379387_3379475 chr2R_3379387_3379450 chr2R_3379231_3379386;chr2R_3379476_3379799 100.00 100.00 100.00 100.00 100.00 90.91 90.00 100.00 100.00 100.00 90.91 100.00 88.89 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 93.75 94.12 100.00 100.00 100.00 100.00 94.12 100.00 91.67 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 95.24 100.00 100.00 K intron_retention Jupiter,I_chr3R_7417030_7419354,I_chr3R_7417630_7417716,I_chr3R_7418347_7445425,RI_chr3R_7442793_7445425 chr3R - chr3R_7417030_7417222 chr3R_7417029_7417030;chr3R_7417222_7417223 chr3R_7416930_7417029;chr3R_7417223_7417633 77.78 NA NA NA NA NA NA NA 81.25 NA NA 66.67 NA NA 77.78 91.67 NA NA NA 100.00 NA 92.31 90.00 66.67 87.50 NA 60.00 50.00 NA NA NA NA NA 90.00 NA NA 42.86 66.67 NA 71.43 NA 88.89 NA NA 36.36 60.00 88.89 NA 100.00 73.33 75.00 NA NA 88.89 NA NA NA NA K intron_retention CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3017120_3017178 chr2L_3017119_3017120;chr2L_3017178_3017179 chr2L_3016926_3017119;chr2L_3017179_3017320 0.00 0.00 0.00 0.00 0.00 0.00 2.29 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.46 0.00 8.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.26 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.79 0.63 1.41 1.27 K alternative_acceptor Cf2,I_chr2L_4882802_4882864 chr2L - chr2L_4882493_4882864;chr2L_4882366_4882864 chr2L_4882802_4882864 chr2L_4882865_4882964;chr2L_4881215_4882365 22.22 25.00 28.57 28.57 14.29 33.33 66.67 25.00 22.22 11.11 14.29 21.05 25.00 25.00 12.50 42.86 33.33 50.00 25.00 16.67 16.67 19.44 10.53 45.45 30.00 12.50 21.43 40.00 18.52 4.55 28.57 15.38 15.62 20.00 20.00 16.67 18.75 11.11 36.36 17.78 18.18 18.18 40.00 33.33 26.67 15.38 25.00 18.92 29.41 25.00 25.00 42.86 0.00 16.67 22.22 22.22 33.33 12.00 K intron_retention CG6845,I_chr3L_148414_148489 chr3L + chr3L_147647_147729 chr3L_147646_147647;chr3L_147729_147730 chr3L_147453_147646;chr3L_147730_147883 88.89 93.33 87.50 95.24 100.00 100.00 79.31 96.43 82.50 70.00 63.64 96.00 87.50 92.31 78.57 95.00 92.31 90.00 83.33 90.24 87.50 84.21 94.12 78.57 81.82 88.89 80.95 NA 91.67 93.33 94.74 91.67 94.12 88.00 90.91 94.12 80.00 75.00 88.89 95.65 78.57 87.88 81.82 80.00 NA 92.31 90.00 93.33 87.88 72.73 92.86 73.33 80.00 88.89 86.36 83.33 93.33 100.00 K alternative_donor Sug,noncoding_12057 chr3L + chr3L_11681439_11682207 chr3L_11681445_11682207 chr3L_11682208_11683255;chr3L_11681252_11681438 12.28 8.89 9.30 8.51 16.67 17.95 13.21 10.94 9.17 12.77 3.85 27.14 22.73 16.13 11.36 13.11 0.00 17.65 10.87 14.29 8.33 12.82 10.00 18.18 12.20 9.52 14.71 17.07 24.14 12.00 8.57 18.18 31.37 11.11 11.36 20.00 15.94 14.71 15.00 11.29 15.15 10.78 13.16 9.38 18.18 14.04 8.06 10.81 11.76 12.70 13.64 15.38 7.69 12.28 4.65 7.32 11.76 8.00 K jcn_only_AD mRpL52,REI_chr2R_3561489_3561568,I_chr2R_3574133_3574191 chr2R - chr2R_3561489_3561568 chr2R_3561489_3561548 chr2R_3561421_3561488;chr2R_3561569_3561634 98.72 99.21 97.65 98.59 100.00 100.00 98.72 97.89 99.41 95.74 98.86 97.74 94.12 98.33 98.95 98.57 100.00 100.00 100.00 97.41 98.89 100.00 99.20 99.18 98.68 98.80 98.61 98.33 100.00 100.00 96.74 96.67 98.06 98.00 93.94 97.09 98.94 99.21 98.75 100.00 99.03 100.00 98.08 98.97 99.22 98.80 97.85 98.89 96.64 98.17 98.52 97.10 98.27 99.26 97.78 98.08 98.51 98.78 K jcn_only_AA dm chrX + chrX_3267757_3268976 chrX_3267757_3268972 chrX_3267207_3267756;chrX_3268977_3270266 97.44 NA NA 100.00 NA NA 100.00 93.02 97.67 NA NA 100.00 NA NA NA 98.28 NA NA 95.45 95.00 NA 100.00 NA NA NA NA 96.55 95.00 95.83 100.00 NA NA 100.00 97.44 NA 86.36 NA NA NA 91.43 NA 87.10 NA 100.00 NA NA NA 91.38 97.44 NA NA NA NA NA NA NA NA NA K intron_retention Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11838019_11838662 chr2R_11838018_11838019;chr2R_11838662_11838663 chr2R_11838001_11838018;chr2R_11838663_11838663 15.38 NA NA 28.57 NA NA 6.67 NA 15.38 NA NA NA NA NA NA NA NA NA NA NA NA 6.85 NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG5261,I_chr2L_7428611_7428877 chr2L + chr2L_7428680_7428877;chr2L_7428680_7428925 chr2L_7428680_7428778 chr2L_7428612_7428679;chr2L_7428926_7428977 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.74 0.00 0.00 0.95 0.00 0.00 0.00 0.00 1.16 0.00 1.27 0.00 0.00 4.72 0.60 0.64 2.41 0.00 0.00 1.06 0.85 0.79 3.05 2.13 1.83 0.64 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.85 0.88 0.47 1.49 0.56 0.00 0.00 0.00 0.88 1.94 0.00 0.00 0.00 1.30 K jcn_only_AA jog,I_chrX_19730788_19739571 chrX - chrX_19730788_19744895 chrX_19730806_19744895 chrX_19744896_19745186;chrX_19730688_19730787 1.52 0.00 0.85 1.61 2.47 2.08 3.09 2.59 0.88 0.71 1.32 1.18 1.56 1.43 1.72 2.73 0.00 0.00 1.52 2.96 0.00 1.78 2.70 2.46 2.78 2.60 0.00 1.41 0.00 2.62 3.85 1.92 1.03 2.68 3.00 0.75 1.89 0.00 1.57 1.67 4.84 0.96 0.00 1.06 1.52 1.22 5.26 0.39 0.49 0.00 0.67 4.04 2.44 0.00 0.92 3.17 1.64 1.45 K alternative_acceptor CG7970 chr3L + chr3L_1653044_1653141 chr3L_1653044_1653130 chr3L_1652975_1653043;chr3L_1653142_1653254 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 2.41 0.00 0.00 12.77 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 3.23 0.00 0.00 NA 0.00 0.00 2.13 0.00 K intron_retention CG3534 chr3R + chr3R_12824699_12824757 chr3R_12824698_12824699;chr3R_12824757_12824758 chr3R_12824509_12824698;chr3R_12824758_12825195 0.00 0.00 0.00 0.00 0.00 0.00 2.56 2.86 0.00 0.00 0.00 2.38 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG34348 chrX + chrX_11234531_11234639 chrX_11234581_11234639 chrX_11234640_11234778;chrX_11234462_11234530 0.00 0.00 0.00 0.00 NA NA 3.57 2.86 2.38 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 5.56 NA 0.00 NA 5.00 NA 0.00 0.00 NA 0.00 4.76 7.69 0.00 3.70 5.00 0.00 5.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 NA 2.33 NA 0.00 4.44 0.00 0.00 NA NA NA 0.00 NA 4.00 2.22 K intron_retention skpA chrX + chrX_550433_551131 chrX_550432_550433;chrX_551131_551132 chrX_550426_550432;chrX_551132_551937 20.00 16.22 19.35 33.33 17.86 15.38 25.00 30.65 12.00 NA 20.00 31.82 11.76 15.15 28.57 33.33 19.44 20.69 21.05 32.73 20.00 NA 17.86 10.81 11.76 21.62 60.00 NA NA NA 44.83 26.67 11.11 35.42 14.29 NA 6.67 8.33 9.52 35.00 NA 27.69 33.33 0.00 NA 35.71 17.39 NA 26.98 8.33 9.52 14.29 30.77 NA 30.56 13.04 16.67 22.22 K intron_retention CG6116,I_chr2L_13291292_13292541 chr2L + chr2L_13288242_13288304 chr2L_13288241_13288242;chr2L_13288304_13288305 chr2L_13287377_13288241;chr2L_13288305_13288562 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 14.29 NA 0.00 NA 0.00 NA 8.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG7849 chr2R + chr2R_1964611_1964665 chr2R_1964611_1964654 chr2R_1964481_1964610;chr2R_1964666_1964878 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 6.25 NA NA 5.56 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 5.56 0.00 0.00 0.00 26.67 5.56 NA NA 18.18 NA NA 2.86 NA NA NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 3.33 0.00 4.17 NA NA NA 0.00 4.35 7.69 0.00 K intron_retention CG9992 chrX - chrX_16276877_16276938 chrX_16276876_16276877;chrX_16276938_16276939 chrX_16276658_16276876;chrX_16276939_16277200 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 1.15 0.00 0.00 1.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.71 0.00 0.00 0.00 0.00 1.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RhoBTB,RI_chr3L_20370940_20371530,I_chr3L_20374844_20374891 chr3L + chr3L_20374822_20374891 chr3L_20374821_20374822;chr3L_20374891_20374892 chr3L_20374744_20374821;chr3L_20374892_20374991 0.00 NA 0.00 63.16 NA NA 19.05 17.39 6.67 NA NA 4.35 NA 0.00 0.00 4.35 0.00 0.00 4.35 0.00 0.00 0.00 7.69 0.00 NA 6.67 11.76 NA NA 0.00 0.00 0.00 0.00 13.33 4.17 NA 0.00 0.00 0.00 0.00 12.00 7.41 NA 0.00 10.00 0.00 NA 0.00 2.70 4.76 0.00 NA NA NA 0.00 5.00 0.00 0.00 K intron_retention Med,CG1792 chr3R + chr3R_27440353_27440411 chr3R_27440352_27440353;chr3R_27440411_27440412 chr3R_27440226_27440352;chr3R_27440412_27441478 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 4.39 0.84 1.83 0.00 0.00 1.25 4.55 2.25 0.00 0.00 0.00 0.00 0.00 1.59 0.00 1.52 0.00 1.57 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA Nca,CG7646 chr3L + chr3L_19986423_19987267;chr3L_19986423_19986483;chr3L_19986423_19989780 chr3L_19986423_19988473 chr3L_19986365_19986422 3.70 NA 3.70 5.63 NA 5.00 4.35 2.04 2.33 NA NA 1.85 5.26 2.56 5.00 4.00 NA NA 6.67 2.94 NA NA 0.00 0.00 NA 3.85 3.70 NA 34.38 NA 3.23 NA NA 7.89 0.00 NA NA NA NA 0.00 0.00 4.65 3.12 0.00 NA 2.04 0.00 7.41 1.54 3.03 3.85 NA NA 4.55 0.00 3.85 6.67 5.41 K intron_retention CG3056,REI_chrX_1265808_1265906 chrX + chrX_1265404_1265483 chrX_1265403_1265404;chrX_1265483_1265484 chrX_1265264_1265403;chrX_1265484_1265807 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.86 0.00 0.00 1.43 0.00 0.00 0.00 1.72 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8468 chr2R + chr2R_10107651_10108112 chr2R_10107650_10107651;chr2R_10108112_10108113 chr2R_10107582_10107650;chr2R_10108113_10108270 91.18 79.41 97.06 92.21 87.50 84.38 92.45 85.71 90.70 90.91 92.45 98.48 97.83 90.70 91.89 85.71 88.37 92.50 95.00 86.24 92.11 85.71 93.75 91.18 90.48 86.54 89.66 93.33 100.00 95.45 92.31 90.91 97.22 92.86 88.46 90.62 86.21 88.89 75.00 93.88 100.00 95.65 89.47 90.32 95.24 89.66 95.65 97.67 94.52 100.00 86.36 90.48 93.75 91.67 89.80 88.24 93.75 85.29 K alternative_acceptor CG18170,CG33230,ABCB7 chr3L + chr3L_1620555_1620918 chr3L_1620555_1620816 chr3L_1620428_1620554;chr3L_1620919_1621042 25.00 36.36 25.00 35.48 19.35 25.71 31.11 29.41 25.00 33.33 21.88 22.54 13.64 23.08 17.65 28.00 26.32 37.50 25.00 28.00 20.83 11.90 30.67 29.31 35.29 31.82 27.59 19.51 16.36 24.00 28.57 24.24 24.56 35.29 25.00 64.86 18.75 41.38 17.65 20.27 23.08 22.09 33.33 19.48 13.46 22.22 28.21 14.00 32.69 20.00 29.82 25.00 25.00 21.95 28.26 29.73 24.49 22.50 K alternative_acceptor Hsc70Cb chr3L + chr3L_14030237_14030580 chr3L_14030237_14030577 chr3L_14030227_14030236;chr3L_14030581_14030850 100.00 100.00 100.00 95.00 100.00 92.86 96.97 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 94.12 100.00 100.00 95.45 100.00 100.00 100.00 100.00 94.12 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 96.15 97.62 100.00 98.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911708_5913333;chr2R_5911755_5913333 chr2R_5911803_5913333 chr2R_5913334_5913352;chr2R_5911703_5911707 50.00 NA NA NA NA NA NA 33.33 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 47.62 NA NA NA NA 56.67 NA NA NA NA NA NA 50.00 NA NA NA NA NA 66.67 NA NA NA K alternative_donor akirin,I_chr3L_7363173_7364806,I_chr3L_7363177_7364806,I_chr3L_7363177_7364831,I_chr3L_7363211_7364831,I_chr3L_7363731_7364806,I_chr3L_7364126_7364806,RI_chr3L_7364737_7364806 chr3L + chr3L_7363177_7364831;chr3L_7363169_7364831 chr3L_7363211_7364831 chr3L_7364832_7364906;chr3L_7363111_7363168 58.90 66.32 69.74 60.87 49.37 50.82 52.66 58.93 63.39 57.45 55.07 65.91 65.35 60.98 50.00 66.89 58.33 65.15 56.86 53.02 72.50 62.50 59.88 67.86 65.31 60.24 59.13 63.22 60.00 59.76 53.54 46.67 30.67 58.24 65.08 58.90 66.09 47.30 53.12 57.85 66.67 70.62 57.75 45.56 70.73 52.70 48.61 62.22 67.44 51.02 57.41 57.32 70.69 56.34 52.89 48.10 54.95 54.00 K jcn_only_AA Ssadh,RI_chr3R_21451890_21451963,I_chr3R_21452371_21452464,I_chr3R_21452407_21452453 chr3R - chr3R_21452386_21452453;chr3R_21452371_21452453 chr3R_21452368_21452453 chr3R_21452454_21452553;chr3R_21452307_21452367 65.00 90.48 37.50 50.00 NA NA 65.52 66.67 59.52 NA 71.43 57.50 66.67 66.67 65.00 53.12 NA 63.64 NA 64.29 NA 65.00 69.70 70.37 NA NA 64.86 64.71 NA 62.86 63.64 NA NA 72.50 75.00 63.33 54.76 58.33 75.00 54.29 NA 52.63 NA 60.87 NA 64.86 72.73 76.19 70.59 48.00 67.44 NA 76.00 75.00 76.00 NA 67.50 73.08 K jcn_only_AD CG4293,RI_chrX_423385_423664,I_chrX_423385_423676 chrX - chrX_423385_423664;chrX_423385_423442 chrX_423385_423676 chrX_423285_423384;chrX_423677_423764 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 NA 0.00 0.00 2.08 0.00 0.00 0.00 0.00 NA 0.00 2.78 0.00 0.00 0.00 4.35 3.85 0.00 0.00 0.00 3.23 0.00 0.00 1.96 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 3.12 NA 0.00 0.00 0.00 0.00 K jcn_only_AD CG1544 chr3R + chr3R_27022696_27024892 chr3R_27022858_27024892 chr3R_27024893_27025010;chr3R_27022664_27022695 100.00 100.00 NA NA NA 100.00 NA 96.00 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA NA NA NA 97.06 100.00 NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA 97.14 100.00 NA NA K intron_retention CG6479 chr3L - chr3L_17331505_17331558 chr3L_17331504_17331505;chr3L_17331558_17331559 chr3L_17331229_17331504;chr3L_17331559_17331818 100.00 100.00 100.00 99.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.18 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG14782,mei-38 chrX + chrX_1371322_1371408 chrX_1371322_1371405 chrX_1371127_1371321;chrX_1371409_1372262 7.04 12.96 8.89 7.32 10.34 0.00 11.90 7.41 13.33 0.00 12.00 5.80 6.90 5.41 6.52 10.71 NA 6.25 3.03 4.67 5.56 13.64 7.81 8.93 10.81 8.00 6.78 NA 6.06 13.70 9.09 8.33 11.35 11.90 2.38 4.69 10.17 4.55 4.41 8.47 8.86 6.74 8.33 0.00 8.42 6.19 3.33 6.03 4.55 3.64 7.04 6.38 5.88 5.19 9.52 6.78 9.09 7.52 K alternative_last_exon CG40045,noncoding_14308,RI_chr3L_24023955_24028531,RI_chr3L_24023958_24028536,I_chr3L_24024771_24028531,I_chr3L_24025959_24028531,I_chr3L_24028601_24028670 chr3L + chr3L_24021824_24021910;chr3L_24021824_24023854 chr3L_24021824_24028531 chr3L_24021911_24022205;chr3L_24023855_24024038 chr3L_24028532_24029494 chr3L_24021648_24021823 1.96 1.30 2.78 2.55 4.17 1.89 0.40 1.06 0.73 3.45 2.27 2.13 2.97 1.01 2.04 0.51 1.64 1.92 1.90 0.91 2.33 7.32 1.18 1.02 1.85 7.55 3.66 3.64 8.11 2.56 1.41 2.63 3.57 0.61 1.23 3.57 6.98 4.35 5.56 1.37 4.44 2.07 1.33 1.10 5.56 1.04 2.50 3.85 0.50 0.95 1.96 1.30 4.92 2.90 1.49 1.27 0.70 1.41 K alternative_donor Flo-2 chrX + chrX_14733457_14734905 chrX_14733569_14734905 chrX_14734906_14735052;chrX_14733442_14733456 13.81 NA 10.53 12.00 15.38 NA 25.00 13.04 13.33 NA NA 23.08 25.00 14.29 10.53 30.00 0.00 NA 23.08 5.56 NA NA NA NA NA 16.67 NA NA NA NA NA NA NA 18.18 NA NA NA NA NA NA NA 10.81 7.69 NA NA NA NA NA 14.81 NA NA NA NA NA 12.50 NA NA NA K jcn_only_AA mus210,RI_chr2R_11200323_11202128 chr2R + chr2R_11199473_11199540 chr2R_11199473_11199537 chr2R_11199017_11199472;chr2R_11199541_11200322 22.22 26.87 21.05 24.71 21.59 25.27 14.38 24.68 18.92 11.90 30.91 20.22 19.54 35.56 18.60 29.21 29.89 22.39 13.27 19.58 24.66 24.34 20.34 27.27 18.31 26.89 22.48 14.68 26.23 26.96 19.05 21.15 23.74 26.88 27.14 21.43 17.86 22.22 23.40 26.03 31.75 22.29 21.84 14.94 17.86 24.32 20.34 24.84 22.35 28.30 16.91 19.67 14.58 25.71 17.36 20.93 19.23 20.29 K intron_retention CG3760,CG3770,CG12851 chr2R + chr2R_20826366_20826478 chr2R_20826365_20826366;chr2R_20826478_20826479 chr2R_20826283_20826365;chr2R_20826479_20826740 4.88 8.57 4.55 4.11 0.00 4.88 6.12 8.00 6.67 0.00 0.00 10.14 0.00 5.71 10.34 10.81 5.71 5.71 7.32 2.82 0.00 11.76 6.82 5.41 4.76 2.70 10.00 20.00 2.22 4.55 10.53 3.03 1.83 5.77 0.00 0.00 1.92 5.26 8.20 5.33 5.06 8.54 10.71 0.00 3.33 2.70 5.88 4.04 4.35 6.38 0.00 5.26 0.00 7.41 0.00 2.63 2.27 3.70 K intron_retention vih chr3L + chr3L_12497753_12497818 chr3L_12497752_12497753;chr3L_12497818_12497819 chr3L_12497346_12497752;chr3L_12497819_12498965 0.83 0.00 2.99 1.19 0.00 3.23 0.00 0.00 0.00 2.86 0.00 0.83 0.00 2.94 0.00 2.47 0.00 0.00 1.67 1.27 0.00 2.27 0.00 2.38 0.00 1.47 5.26 6.67 19.35 0.00 1.43 0.00 0.00 2.44 0.00 0.00 0.88 0.00 1.45 1.17 1.59 1.79 0.00 0.00 0.00 3.75 0.00 1.52 3.10 0.00 0.00 0.00 3.77 2.00 0.00 0.00 3.77 2.68 K jcn_only_AD CalpA chr2R + chr2R_15312652_15313538 chr2R_15312744_15313538 chr2R_15313539_15313723;chr2R_15312580_15312651 96.51 97.22 88.78 83.17 88.00 89.19 89.32 90.18 90.30 100.00 87.04 90.23 81.63 90.91 87.74 92.90 81.58 90.91 86.36 88.10 86.76 97.28 100.00 100.00 98.67 90.72 100.00 100.00 98.74 97.26 88.98 98.78 96.83 89.57 100.00 100.00 96.43 95.56 98.82 100.00 99.00 90.14 87.18 97.16 96.91 99.38 100.00 96.51 93.06 100.00 99.04 100.00 97.65 100.00 92.00 96.83 98.55 96.48 K intron_retention Eb1,RI_chr2R_2640290_2642206,I_chr2R_2640494_2642206,I_chr2R_2641187_2642206,RI_chr2R_2641944_2642025,I_chr2R_2641954_2642206,I_chr2R_2642491_2642549 chr2R + chr2R_2641009_2642206 chr2R_2641008_2641009;chr2R_2642206_2642207 chr2R_2640732_2641008;chr2R_2642207_2642306 92.31 86.67 84.62 65.00 90.00 90.00 93.75 92.31 95.00 100.00 100.00 100.00 NA NA 92.86 91.67 88.89 92.86 NA 83.33 100.00 96.77 84.85 75.00 100.00 NA 90.91 88.89 84.21 93.75 100.00 100.00 81.25 93.33 100.00 93.33 79.31 96.00 96.77 87.88 75.00 95.00 88.89 92.31 81.48 94.12 92.86 96.30 95.00 85.00 95.45 92.31 63.64 90.00 100.00 93.33 77.78 79.17 K jcn_only_AD osa,R_chr3R_13525411_13533475,I_chr3R_13525426_13525859 chr3R - chr3R_13525426_13525859;chr3R_13525426_13533492 chr3R_13525426_13525849 chr3R_13525326_13525425;chr3R_13533493_13533575 4.00 1.75 1.20 8.16 3.67 2.33 6.56 7.29 3.49 1.83 2.35 0.78 9.38 10.34 4.35 9.68 5.38 5.88 3.75 8.21 3.23 4.42 3.93 2.19 1.90 2.41 5.71 8.84 12.27 1.93 1.12 3.28 1.95 7.30 5.03 6.99 1.92 0.00 2.78 5.34 4.35 3.09 2.82 4.00 1.80 12.05 4.30 8.24 2.35 4.48 4.79 1.92 7.53 0.00 5.77 1.54 9.84 10.96 K alternative_last_exon CG34039,noncoding_12577 chr3L + chr3L_14553189_14554958 chr3L_14553189_14553282 chr3L_14554959_14555099 chr3L_14553283_14553864 chr3L_14553171_14553188 32.45 30.00 16.67 5.00 25.00 27.27 14.29 6.90 18.18 33.33 40.00 27.27 18.75 15.38 30.77 8.00 20.00 30.00 11.11 21.74 25.00 NA 30.77 50.00 42.86 15.38 28.57 57.14 70.00 62.50 40.00 50.00 70.00 15.79 37.50 37.50 66.67 70.00 58.33 38.89 62.50 20.00 18.18 36.36 45.45 50.00 36.36 50.00 16.00 25.00 50.00 37.50 60.00 38.46 12.50 40.00 31.58 63.64 K alternative_acceptor CG42533,F_chr2L_7476906_7476978 chr2L - chr2L_7474506_7476978 chr2L_7476906_7476978 chr2L_7476979_7477078;chr2L_7474406_7474505 5.56 3.57 3.45 1.82 4.17 4.55 10.64 2.60 5.17 9.09 5.56 5.26 12.00 4.65 6.90 3.85 2.50 6.45 4.26 21.11 5.56 8.00 5.56 8.33 7.69 3.23 9.52 14.29 5.56 5.56 2.13 6.67 7.14 3.75 6.67 4.76 18.18 7.14 5.00 9.09 4.76 3.03 3.23 3.85 12.50 5.00 7.14 7.41 4.00 5.26 8.33 7.14 7.14 0.00 4.76 7.14 5.26 3.85 K alternative_donor CG6439,I_chr3R_17843815_17844345,I_chr3R_17843819_17843879 chr3R - chr3R_17843819_17844345 chr3R_17843819_17843879 chr3R_17843719_17843818;chr3R_17844346_17844438 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG9795,EI_chr3R_145575_147566,RI_chr3R_145613_145675 chr3R + chr3R_145613_147566 chr3R_145613_145675 chr3R_145513_145612;chr3R_147567_147666 11.32 13.89 3.45 2.86 NA 11.76 17.95 15.91 10.29 NA NA 8.93 27.27 13.64 10.87 2.78 10.71 34.78 19.44 18.00 NA NA 3.77 10.20 4.00 7.41 13.21 NA NA 15.00 16.67 0.00 9.52 17.86 12.50 NA 6.45 8.57 5.66 14.06 NA 7.69 21.21 12.12 34.78 12.50 9.38 4.76 14.29 11.32 5.08 7.14 4.35 15.00 9.76 11.54 12.12 NA K jcn_only_AA Cenp-C chr3R + chr3R_4391955_4392053 chr3R_4391955_4392017 chr3R_4390620_4391954;chr3R_4392054_4392078 95.24 100.00 NA 89.29 NA NA 90.00 90.00 92.59 NA NA 96.97 NA NA NA 100.00 NA NA 100.00 95.00 NA NA 80.00 NA NA NA 95.24 NA NA NA NA NA 95.45 NA 100.00 NA 90.91 NA 100.00 93.10 NA NA NA NA NA NA NA NA 97.22 NA NA NA NA NA NA NA NA NA K intron_retention Moe,I_chrX_8774434_8791759 chrX - chrX_8768145_8768221 chrX_8768144_8768145;chrX_8768221_8768222 chrX_8767636_8768144;chrX_8768222_8768434 0.06 0.12 0.00 0.31 0.00 0.00 0.07 0.00 0.11 0.00 0.00 0.14 0.00 0.08 0.00 0.19 0.36 0.00 0.08 0.00 0.00 0.00 0.10 0.11 0.00 0.00 0.43 0.37 0.00 0.08 0.07 0.00 0.00 0.18 0.00 0.18 0.00 0.06 0.14 0.07 0.08 0.07 0.00 0.17 0.08 0.07 0.00 0.00 0.11 0.08 0.06 0.00 0.00 0.00 0.00 0.06 0.00 0.00 K intron_retention Mpcp chr3L + chr3L_14532170_14532652 chr3L_14532169_14532170;chr3L_14532652_14532653 chr3L_14531829_14532169;chr3L_14532653_14533546 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG4449,RI_chr3R_19076263_19076888 chr3R - chr3R_19076263_19076888;chr3R_19076260_19076888 chr3R_19076263_19076327,chr3R_19076260_19076327;chr3R_19076825_19076888 chr3R_19076328_19076824 chr3R_19076163_19076259;chr3R_19076889_19076982 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 94.44 95.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 96.97 96.55 100.00 100.00 100.00 93.33 87.50 95.45 93.75 94.12 100.00 96.77 94.74 85.71 96.67 100.00 95.65 94.59 95.45 97.44 100.00 100.00 94.44 96.15 100.00 96.43 97.56 100.00 100.00 100.00 93.33 94.74 100.00 100.00 100.00 100.00 K intron_retention TfIIB chr2L + chr2L_10431889_10431943 chr2L_10431888_10431889;chr2L_10431943_10431944 chr2L_10431477_10431888;chr2L_10431944_10432178 0.00 0.00 2.17 2.41 0.00 0.00 1.32 4.41 1.85 0.00 0.00 0.00 0.00 4.88 0.00 0.00 0.00 2.04 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 3.23 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 K intron_retention Sk2 chr3L + chr3L_3048167_3048645 chr3L_3048166_3048167;chr3L_3048645_3048646 chr3L_3046934_3048166;chr3L_3048646_3050161 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 K intron_retention Stat92E,att-ORFB chr3R - chr3R_16364438_16364942 chr3R_16364437_16364438;chr3R_16364942_16364943 chr3R_16364385_16364437;chr3R_16364943_16365057 22.58 26.67 12.00 NA NA 13.33 45.45 19.23 21.43 NA 5.00 23.68 NA 20.00 NA 22.58 NA 0.00 NA 10.14 0.00 23.08 27.27 30.77 NA NA 30.77 NA 52.63 NA 2.94 NA NA 27.27 25.00 20.00 25.00 NA 26.67 17.39 NA 17.65 14.29 NA 40.00 29.41 11.76 34.78 24.24 12.50 26.32 NA 25.00 NA 13.33 25.00 20.00 11.54 K mutually_exclusive cora,I_chr2R_15125277_15130573,I_chr2R_15129291_15129988 chr2R + chr2R_15124569_15125246,chr2R_15125277_15125656 chr2R_15124569_15124832,chr2R_15124947_15125656 chr2R_15125247_15125276 chr2R_15124833_15124946 chr2R_15124447_15124568;chr2R_15125657_15125819 64.28 NA NA NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814174;chr2R_2814327_2814894;chr2R_2815657_2816013;chr2R_2816342_2817753 chr2R_2814175_2814326;chr2R_2814895_2815656;chr2R_2816014_2816341 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Eno,I_chr2L_1726650_1727645,I_chr2L_1726656_1727485,EI_chr2L_1727403_1727645,I_chr2L_1728229_1728302 chr2L - chr2L_1726656_1727645;chr2L_1726650_1727645;chr2L_1727403_1727645 chr2L_1727559_1727645 chr2L_1727646_1727735;chr2L_1726556_1726649 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.10 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.12 0.24 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_last_exon CG2765,RI_chr2R_20849027_20852094,I_chr2R_20849271_20849626,I_chr2R_20849271_20850005,E_chr2R_20849271_20850693,E_chr2R_20849271_20851166,E_chr2R_20849271_20852090,E_chr2R_20851190_20852094 chr2R - chr2R_20851994_20852094,chr2R_20851822_20852094;chr2R_20849027_20852094 chr2R_20849271_20852094 chr2R_20835271_20849026 chr2R_20849129_20849270 chr2R_20852095_20852190 96.14 95.33 94.15 100.00 95.45 95.93 95.95 96.72 91.19 100.00 100.00 92.31 100.00 95.78 95.98 100.00 93.37 89.20 96.21 91.11 96.79 100.00 96.96 95.51 100.00 100.00 96.14 100.00 90.60 94.63 95.89 100.00 95.68 93.65 94.66 95.48 97.02 95.98 96.70 92.71 100.00 92.64 93.10 97.09 100.00 100.00 100.00 91.22 92.40 100.00 95.28 100.00 100.00 100.00 94.76 100.00 100.00 100.00 K intron_retention CG34133,F_chr3R_25696884_25696960 chr3R + chr3R_25695777_25696960 chr3R_25695776_25695777;chr3R_25696960_25696961 chr3R_25695572_25695776;chr3R_25696961_25697060 0.00 NA 0.00 9.68 NA NA 6.25 NA 0.00 NA NA 9.09 NA NA NA 0.00 NA NA NA 0.00 NA 35.48 6.67 NA NA NA NA NA 0.00 0.00 0.00 NA NA 9.52 NA 0.00 0.00 NA 0.00 0.00 NA 5.26 NA NA NA NA NA NA 0.00 NA 7.14 NA NA NA NA NA NA NA K intron_retention Mpk2,I_chr3R_19977468_19977530,F_chr3R_19985127_19985197 chr3R - chr3R_19977468_19977567 chr3R_19977467_19977468;chr3R_19977567_19977568 chr3R_19977368_19977467;chr3R_19977568_19977630 4.55 0.00 20.00 12.50 NA NA 9.09 0.00 3.12 NA 5.56 3.57 0.00 NA 9.52 5.56 0.00 0.00 NA 2.38 0.00 0.00 9.09 4.35 NA 0.00 0.00 17.65 26.09 5.26 12.50 4.55 6.45 0.00 0.00 NA 4.35 NA 8.33 0.00 4.55 8.57 NA 0.00 6.90 7.32 0.00 7.41 8.82 20.00 0.00 0.00 5.56 NA 8.33 0.00 0.00 16.22 K intron_retention rogdi chr3L + chr3L_17044555_17044960 chr3L_17044554_17044555;chr3L_17044960_17044961 chr3L_17044421_17044554;chr3L_17044961_17045032 9.38 12.50 5.13 9.43 6.67 5.88 7.89 7.41 8.96 8.33 12.00 5.88 9.52 12.12 6.38 10.71 11.11 6.67 5.13 8.06 13.04 20.00 6.25 8.33 13.33 8.33 17.65 19.05 17.65 14.29 9.62 5.56 15.38 7.55 6.52 9.38 17.24 3.33 0.00 12.50 0.00 9.86 12.90 13.16 10.71 6.25 14.29 17.65 5.06 8.70 9.52 22.73 10.71 6.90 5.36 12.50 8.33 8.11 K jcn_only_AA CG8632,CG8646 chr2R + chr2R_8541564_8541630 chr2R_8541564_8541615 chr2R_8541495_8541563;chr2R_8541631_8541699 25.70 17.24 20.69 19.30 40.74 34.48 15.91 31.11 20.34 39.62 NA 31.91 48.39 NA 24.00 28.57 33.33 21.88 29.41 32.41 NA 25.23 15.00 14.29 35.14 42.86 16.67 7.14 27.27 30.86 17.02 30.68 34.25 34.04 24.53 41.94 26.32 21.43 23.26 22.39 28.80 14.08 NA 25.26 17.14 31.97 22.45 25.69 24.36 NA 31.91 30.00 19.05 25.71 25.64 19.57 39.02 31.56 K intron_retention RpL15 chr3LHet + chr3LHet_2397820_2398127 chr3LHet_2397819_2397820;chr3LHet_2398127_2398128 chr3LHet_2397802_2397819;chr3LHet_2398128_2398454 81.08 90.68 78.71 66.89 92.26 84.73 98.36 58.23 96.25 85.26 90.66 93.85 96.40 95.29 58.39 95.65 70.54 82.68 69.02 90.45 93.22 62.66 87.21 91.67 92.11 71.88 90.12 28.57 48.11 55.35 88.27 29.08 42.66 53.64 60.71 55.36 92.80 89.23 95.61 10.32 39.39 65.76 73.40 10.29 34.58 41.53 94.50 31.33 67.52 97.44 91.03 92.39 4.79 81.08 69.16 90.48 92.47 19.28 K intron_retention lic,CG2200 chrX + chrX_12986036_12986121 chrX_12986035_12986036;chrX_12986121_12986122 chrX_12985645_12986035;chrX_12986122_12986254 1.72 2.63 2.73 2.73 1.96 0.00 1.22 2.38 1.47 1.24 0.00 1.43 1.12 0.97 0.00 1.21 0.00 1.89 2.56 1.73 0.00 2.35 1.30 2.23 1.89 0.81 6.00 6.00 3.80 1.39 1.63 4.39 2.07 1.42 1.67 4.03 2.76 0.00 2.43 3.25 1.85 1.67 0.00 1.15 2.13 1.52 0.65 3.74 2.00 2.49 1.12 1.64 0.89 1.72 1.47 1.74 1.73 1.80 K alternative_acceptor CG8445,I_chr2R_12083437_12083571,I_chr2R_12083437_12083760,I_chr2R_12083476_12083760 chr2R - chr2R_12083437_12083571 chr2R_12083506_12083571 chr2R_12083572_12083671;chr2R_12083376_12083436 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 NA 100.00 92.86 100.00 NA 100.00 100.00 88.89 NA 92.86 100.00 NA 100.00 91.67 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 80.00 94.12 88.89 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 93.33 100.00 100.00 100.00 NA 100.00 100.00 90.00 85.71 K jcn_only_AA phtf,I_chr2R_2629598_2630209 chr2R + chr2R_2632283_2632550 chr2R_2632283_2632342 chr2R_2632108_2632282;chr2R_2632551_2632699 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 98.11 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG17082,I_chr2R_632143_635290,R_chr2R_642176_644740,I_chr2R_644094_644145,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_631984_632274;chr2R_632196_632274;chr2R_632085_632274;chr2R_632143_632274 chr2R_632192_632274 chr2R_632275_632399;chr2R_631970_631983 16.67 NA NA 0.00 NA NA 12.50 50.00 25.00 NA NA 50.00 NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA K intron_retention msps,I_chr3R_11877071_11877796 chr3R + chr3R_11885407_11885460 chr3R_11885406_11885407;chr3R_11885460_11885461 chr3R_11885207_11885406;chr3R_11885461_11886397 0.00 0.00 1.31 2.13 0.99 0.00 0.00 1.58 1.23 0.00 1.05 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.43 0.00 3.25 3.64 0.00 0.00 2.52 0.00 0.00 0.00 0.00 0.40 0.00 0.72 0.00 0.00 0.42 0.35 3.42 0.00 0.87 0.00 1.22 0.00 0.00 0.00 0.78 0.00 0.38 0.00 0.00 0.00 1.40 0.00 0.00 0.00 K alternative_donor Sp212 chr3R - chr3R_10049531_10049803 chr3R_10049531_10049603 chr3R_10049365_10049530;chr3R_10049804_10049846 96.88 100.00 93.48 97.96 93.55 97.06 96.30 95.65 93.02 94.12 100.00 97.78 94.74 97.22 97.50 95.45 94.12 100.00 95.12 98.57 96.55 96.88 98.33 92.86 100.00 96.97 100.00 95.24 97.83 96.15 96.43 93.94 96.00 94.92 96.55 100.00 98.18 97.30 93.88 93.40 90.91 96.00 93.94 98.25 95.00 92.31 98.31 92.21 98.73 98.15 98.28 96.88 100.00 98.00 97.78 92.68 99.22 98.17 K intron_retention CG11357,I_chr3L_4542781_4542858,C_chr3L_4563905_4578759 chr3L + chr3L_4542249_4542576 chr3L_4542248_4542249;chr3L_4542576_4542577 chr3L_4542167_4542248;chr3L_4542577_4542907 94.67 93.55 94.67 94.78 97.22 95.89 96.19 98.88 94.34 95.45 92.65 93.10 93.18 96.81 95.24 87.74 98.75 95.45 95.00 94.61 90.16 87.10 95.59 91.30 96.97 90.54 92.73 100.00 93.33 78.57 94.17 94.12 100.00 95.86 97.96 97.37 87.10 96.67 100.00 98.80 91.30 94.30 90.28 92.31 85.00 96.15 100.00 97.78 94.57 90.70 97.06 93.88 96.77 90.62 93.41 97.44 90.24 97.62 K jcn_only_AA svr,RI_chrX_421417_421591 chrX + chrX_396970_398700 chrX_396970_397394 chrX_396869_396969;chrX_398701_398818 3.70 5.00 NA NA NA NA NA 9.09 5.71 NA NA 0.00 NA 5.00 NA 0.00 NA NA NA 3.70 NA NA 2.56 0.00 NA NA NA NA NA NA NA NA 9.09 0.00 NA NA 11.54 NA NA 3.70 NA 0.00 NA NA NA 13.04 NA 4.35 2.94 NA NA NA NA NA NA NA NA 2.78 K intron_retention msk,I_chr3L_8109906_8110404,E_chr3L_8113475_8114438 chr3L + chr3L_8113851_8113914 chr3L_8113850_8113851;chr3L_8113914_8113915 chr3L_8113378_8113850;chr3L_8113915_8114681 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 1.54 1.40 0.24 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 K intron_retention CG5521 chr3R + chr3R_22795518_22796373 chr3R_22795517_22795518;chr3R_22796373_22796374 chr3R_22795407_22795517;chr3R_22796374_22796545 0.00 6.67 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 5.88 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention CG18624,RI_chrX_7787450_7787620,RI_chrX_7787450_7787687,RI_chrX_7787524_7787687 chrX - chrX_7787524_7787620 chrX_7787523_7787524;chrX_7787620_7787621 chrX_7787424_7787523;chrX_7787621_7787704 19.35 NA 23.08 42.55 5.56 15.38 20.83 15.38 30.00 NA NA 28.57 20.00 20.00 26.09 19.57 23.53 20.00 22.22 20.00 12.50 24.14 35.29 16.67 28.57 8.33 29.41 NA 26.09 NA 20.00 8.33 10.81 17.50 0.00 37.50 15.38 NA 14.29 29.17 13.79 23.68 17.39 19.05 16.67 19.35 9.09 12.50 15.38 22.22 11.11 NA 18.75 NA 21.05 10.00 13.79 7.41 K cassette gish chr3R + chr3R_12123068_12126966 chr3R_12123068_12124191;chr3R_12124273_12126966 chr3R_12124192_12124272 chr3R_12122897_12123067;chr3R_12126967_12127073 100.00 98.61 100.00 100.00 100.00 100.00 99.08 100.00 100.00 98.51 100.00 99.29 100.00 100.00 100.00 100.00 100.00 100.00 98.63 100.00 100.00 100.00 99.15 100.00 98.57 100.00 100.00 100.00 90.84 100.00 98.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.49 99.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.00 100.00 100.00 98.68 98.63 100.00 100.00 100.00 100.00 K alternative_donor CG17508,RI_chr2R_1496995_1497120 chr2R + chr2R_1496288_1496517;chr2R_1496341_1496517;chr2R_1496303_1496517 chr2R_1496337_1496517 chr2R_1496518_1496994;chr2R_1496153_1496287 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette PMCA,I_chr4_350028_350896,E_chr4_350055_363541,I_chr4_350064_350896,I_chr4_350959_363547,I_chr4_371836_372509,I_chr4_373671_374568,I_chr4_376108_379519 chr4 - chr4_350055_352023;chr4_350055_363547 chr4_350055_350896;chr4_350966_363547,chr4_350966_352023 chr4_350897_350965 chr4_349964_350054;chr4_363548_363641 90.00 85.00 88.00 93.33 80.95 91.30 54.55 95.83 90.00 66.67 88.24 93.55 86.11 85.71 93.75 95.24 95.00 94.74 100.00 97.37 90.91 92.31 90.48 100.00 90.91 91.67 69.57 75.00 100.00 100.00 89.74 88.46 93.75 93.94 100.00 72.73 92.86 77.27 90.00 85.19 82.61 86.11 90.00 93.55 70.59 90.32 95.24 95.45 86.21 88.00 92.00 84.62 66.67 85.71 95.00 80.00 82.76 73.17 K cassette I_chr2L_6323791_6325172,Gef26,I_chr2L_6330719_6330770 chr2L + chr2L_6329698_6330770 chr2L_6329698_6330122;chr2L_6330564_6330770 chr2L_6330123_6330563 chr2L_6329548_6329697;chr2L_6330771_6330832 71.59 71.79 64.71 79.49 52.00 68.18 53.85 60.00 65.48 80.43 56.25 66.67 41.67 62.50 58.62 90.48 69.57 64.86 59.09 66.67 69.57 84.44 78.57 82.00 53.49 48.00 76.00 80.95 81.25 68.89 67.86 87.50 91.67 72.92 66.67 64.44 85.14 88.37 71.59 77.91 50.00 72.13 54.55 78.95 88.41 83.33 75.68 94.34 68.42 70.00 67.92 73.08 85.71 81.82 61.29 79.41 77.19 84.62 K cassette f-cup,RI_chr3R_9522069_9522165,I_chr3R_9524004_9524059,EI_chr3R_9524613_9524789 chr3R - chr3R_9522069_9522548 chr3R_9522069_9522163;chr3R_9522491_9522548 chr3R_9522164_9522490 chr3R_9521969_9522068;chr3R_9522549_9522949 0.00 4.76 4.76 14.29 NA 0.00 3.45 0.00 2.44 NA 0.00 2.94 0.00 0.00 5.56 15.00 NA 5.56 5.56 0.00 6.25 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 6.67 0.00 3.70 4.17 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 NA 0.00 5.56 0.00 0.00 0.00 0.00 K intron_retention CG4293,RI_chrX_422511_422577,I_chrX_423385_423676 chrX - chrX_422517_422577 chrX_422516_422517;chrX_422577_422578 chrX_421926_422516;chrX_422578_422677 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 4.76 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 K jcn_only_AD TBPH,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19747351_19747879 chr2R_19747351_19747409 chr2R_19747213_19747350;chr2R_19747880_19748038 98.39 97.30 98.59 96.67 100.00 96.00 98.41 98.25 100.00 97.50 96.15 98.85 97.62 98.39 100.00 100.00 97.50 100.00 94.74 95.58 100.00 100.00 94.94 100.00 100.00 96.77 98.39 97.50 97.37 100.00 98.59 98.48 100.00 100.00 97.44 100.00 96.91 98.75 99.01 98.51 100.00 99.18 97.50 98.04 96.83 96.30 96.15 96.00 97.00 100.00 95.77 98.15 94.29 100.00 100.00 98.57 99.11 97.37 K intron_retention CG9875,CG34423,CG34424 chr2R + chr2R_19246291_19246355 chr2R_19246290_19246291;chr2R_19246355_19246356 chr2R_19246281_19246290;chr2R_19246356_19246419 37.04 30.43 19.05 32.00 26.32 NA 60.00 29.17 23.68 44.00 46.15 29.41 NA NA 15.38 NA 31.58 29.17 NA 45.16 31.82 83.33 34.62 41.38 50.00 50.00 63.16 48.15 61.29 41.18 34.78 42.11 61.11 27.27 43.75 67.86 24.39 38.10 42.86 25.00 66.67 26.19 25.00 38.89 33.33 37.04 33.33 26.32 37.04 41.86 44.00 26.32 28.57 42.11 25.93 38.89 34.78 38.89 K alternative_donor CG14646 chr3R + chr3R_216292_216399 chr3R_216341_216399 chr3R_216400_216431;chr3R_216265_216291 100.00 95.45 96.88 97.96 96.43 100.00 97.44 98.08 98.57 100.00 96.15 100.00 95.83 100.00 97.30 100.00 100.00 100.00 97.22 100.00 95.83 100.00 93.33 96.55 100.00 100.00 97.30 100.00 100.00 100.00 96.43 95.00 100.00 97.78 94.74 100.00 100.00 100.00 100.00 100.00 100.00 95.45 96.77 96.30 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 95.83 100.00 100.00 100.00 96.97 100.00 K jcn_only_AD CG5953,snoRNA:Me28S-C1237 chr2L - chr2L_16528440_16532458;chr2L_16528440_16532707 chr2L_16528440_16532720 chr2L_16527390_16528439;chr2L_16532721_16532862 84.50 NA NA NA NA NA NA 91.30 92.86 NA 78.26 100.00 NA NA NA 97.06 NA NA NA 83.33 93.75 NA NA NA NA NA NA NA NA NA NA NA NA 80.00 92.00 NA NA NA 85.00 NA NA 82.05 NA NA NA 83.33 75.00 84.38 84.62 NA NA NA NA 79.17 NA 95.45 NA 76.92 K alternative_acceptor msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585733_2586036 chr3L_2585739_2586036 chr3L_2586037_2586103;chr3L_2585639_2585732 94.74 NA 90.91 93.33 NA 90.91 90.48 95.24 95.83 NA 100.00 100.00 100.00 90.00 100.00 86.67 NA 90.91 100.00 92.86 100.00 93.75 75.00 91.67 100.00 100.00 100.00 NA 94.74 88.89 NA NA 100.00 100.00 NA NA 88.89 NA NA 100.00 100.00 100.00 88.89 100.00 NA 90.00 NA 86.96 94.74 NA 100.00 88.89 NA NA 92.86 NA NA NA K jcn_only_AD MED26,I_chr4_807836_808040,I_chr4_807836_808089 chr4 - chr4_807836_808077;chr4_807836_808006 chr4_807836_808040 chr4_807736_807835;chr4_808078_808140 0.48 0.00 2.13 1.03 0.00 2.50 1.96 0.96 1.41 0.00 NA 0.00 2.04 2.13 2.38 1.96 5.71 0.00 1.89 2.50 0.00 0.00 1.96 0.00 0.00 2.94 0.00 2.50 1.32 1.47 1.79 0.00 0.00 4.12 0.00 2.22 NA 4.35 NA 0.00 0.00 2.53 0.00 0.00 NA 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.61 NA NA 0.00 K jcn_only_AD CG30090,RI_chr2R_11577574_11577625 chr2R + chr2R_11577570_11577625 chr2R_11577574_11577625 chr2R_11577626_11577671;chr2R_11577474_11577569 4.17 1.89 4.17 13.21 2.78 5.13 0.00 2.88 4.76 NA 0.00 3.06 3.30 6.12 1.56 2.73 1.67 4.94 4.17 3.80 8.75 4.35 12.12 2.70 NA 3.57 2.63 NA 0.00 7.69 15.66 5.41 3.49 5.13 0.00 NA 7.02 5.88 12.73 2.78 2.70 4.70 5.88 4.17 10.20 3.17 1.79 7.27 3.57 3.70 7.41 10.34 7.69 5.17 3.12 5.00 4.17 3.74 K intron_retention CG5273 chrX + chrX_654562_654714 chrX_654561_654562;chrX_654714_654715 chrX_653809_654561;chrX_654715_656081 0.00 0.00 0.00 NA 0.00 NA NA NA 9.09 NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 3.45 NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 4.35 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 K intron_retention CG12084,I_chr3L_1494940_1496317,I_chr3L_1494947_1496080,RI_chr3L_1499880_1501350 chr3L - chr3L_1494947_1496317 chr3L_1494946_1494947;chr3L_1496317_1496318 chr3L_1494847_1494946;chr3L_1496318_1496417 1.54 0.00 0.00 7.14 0.00 9.76 6.98 4.69 1.54 0.00 0.00 1.61 0.00 0.00 0.00 6.82 0.00 0.00 0.00 4.92 0.00 4.96 10.00 0.00 0.00 2.70 8.70 4.17 0.00 1.15 0.00 2.56 2.65 0.00 1.85 3.92 0.00 0.00 0.00 0.00 2.22 5.63 5.26 2.00 2.27 2.70 0.00 0.00 4.92 0.00 0.00 6.90 0.00 NA 2.56 NA 5.26 2.60 K jcn_only_AA rudimentary,I_chrX_16561903_16561969 chrX + chrX_16549643_16550417 chrX_16549643_16550361 chrX_16549413_16549642;chrX_16550418_16551189 3.33 0.00 1.19 8.00 2.08 1.56 14.89 3.16 2.38 3.33 4.26 6.31 3.17 2.74 2.70 2.47 3.33 4.76 2.20 4.13 0.00 11.11 6.45 7.89 17.39 8.57 1.67 2.86 9.52 13.16 1.08 4.76 5.08 5.00 13.04 3.33 4.76 2.33 4.71 5.88 NA 1.27 3.12 0.00 0.00 NA 8.00 8.89 3.85 0.00 4.69 0.00 2.44 NA 0.00 4.76 0.00 2.78 K intron_retention desat1,RI_chr3R_8269415_8270520 chr3R + chr3R_8272284_8272344 chr3R_8272283_8272284;chr3R_8272344_8272345 chr3R_8272098_8272283;chr3R_8272345_8273333 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Rox8,I_chr3R_19872211_19872659,I_chr3R_19876189_19876240 chr3R - chr3R_19869850_19869918 chr3R_19869868_19869918 chr3R_19869919_19870012;chr3R_19869258_19869849 11.00 12.30 13.79 14.16 10.59 10.67 11.54 9.57 12.14 8.86 14.06 10.07 7.35 10.61 7.41 13.33 9.52 9.57 10.81 12.15 12.16 13.14 10.38 11.69 8.49 13.64 10.64 14.95 7.92 9.77 10.29 13.24 15.05 13.08 14.63 8.33 7.85 6.88 11.00 14.29 14.04 9.60 11.48 10.17 12.12 11.21 11.43 15.62 10.87 10.00 13.22 5.26 8.55 13.10 6.93 9.79 11.76 17.81 K intron_retention CG31619,I_chr2L_21725446_21728027 chr2L + chr2L_21727363_21727422 chr2L_21727362_21727363;chr2L_21727422_21727423 chr2L_21727006_21727362;chr2L_21727423_21727478 0.00 0.83 1.23 3.00 3.49 1.37 4.65 1.04 1.74 0.00 NA 0.60 NA 0.00 1.80 0.00 0.00 0.00 0.00 2.05 0.00 4.35 1.56 0.00 0.00 5.48 1.05 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 1.48 1.04 1.26 0.00 0.00 0.00 0.00 0.85 0.00 0.00 2.06 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 K intron_retention chico chr2L - chr2L_10244159_10244218 chr2L_10244158_10244159;chr2L_10244218_10244219 chr2L_10242565_10244158;chr2L_10244219_10244387 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 15.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 NA 0.00 NA 0.00 0.00 NA 2.22 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K intron_retention KrT95D,I_chr3R_19825840_19825904 chr3R - chr3R_19831718_19838704 chr3R_19831717_19831718;chr3R_19838704_19838705 chr3R_19831410_19831717;chr3R_19838705_19838952 0.00 0.00 0.00 4.88 0.00 0.00 1.25 1.08 1.32 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 3.57 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG4239,I_chrX_16279725_16280317 chrX + chrX_16279372_16281003;chrX_16279725_16281003 chrX_16279721_16281003 chrX_16281004_16281322;chrX_16279353_16279371 2.90 17.95 3.70 1.54 3.45 5.00 5.88 0.00 0.00 NA 0.00 1.39 4.55 4.35 11.43 1.56 0.00 0.00 0.00 5.63 3.70 0.00 0.00 6.38 0.00 3.12 2.90 2.50 3.57 0.00 NA 0.00 8.70 3.23 3.03 0.00 3.70 5.45 5.48 1.12 NA 1.30 8.00 2.94 NA 0.00 6.06 NA 2.61 2.27 3.77 4.17 0.00 0.00 2.78 2.22 5.00 NA K alternative_donor Rbp2,I_chrX_16342886_16343906,I_chrX_16343528_16343906 chrX + chrX_16342763_16343906 chrX_16343528_16343906 chrX_16343907_16344006;chrX_16342757_16342762 0.72 1.41 0.00 0.00 0.00 1.03 0.75 0.51 0.98 0.00 0.00 0.97 0.00 1.15 0.88 0.62 0.00 1.30 0.99 0.34 0.00 0.79 2.63 4.76 5.26 1.04 0.00 1.69 0.50 0.00 1.10 0.78 0.25 0.42 2.00 1.27 4.35 4.76 3.45 0.63 0.67 0.66 1.22 1.35 0.00 0.44 0.00 0.42 0.35 8.33 3.12 5.56 0.00 NA 0.70 5.56 0.00 0.22 K intron_retention CG9743,RI_chr3R_26025392_26028528 chr3R - chr3R_26022764_26022818 chr3R_26022763_26022764;chr3R_26022818_26022819 chr3R_26022588_26022763;chr3R_26022819_26023210 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.74 1.47 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 K cassette CG33558,I_chr2R_2816779_2817354,I_chr2R_2820149_2820628,EI_chr2R_2820947_2821570,CREI_chr2R_2832933_2850384 chr2R - chr2R_2817876_2821570 chr2R_2817876_2820628;chr2R_2821433_2821570 chr2R_2820629_2821432 chr2R_2817851_2817875;chr2R_2821571_2821639 100.00 98.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.72 100.00 100.00 K jcn_only_AD uzip,I_chr2R_20916008_20916468 chr2R + chr2R_20899685_20900155;chr2R_20899701_20900155 chr2R_20899732_20900155 chr2R_20900156_20900229;chr2R_20899603_20899684 2.63 3.57 1.67 3.03 0.00 5.56 3.12 3.41 2.47 2.44 0.00 5.00 2.63 4.65 1.82 2.88 1.64 0.00 3.03 5.22 0.00 1.43 1.01 1.33 3.03 2.13 1.89 4.35 7.84 0.00 3.23 0.00 2.78 1.01 3.45 3.39 8.33 0.00 2.70 2.63 0.00 1.82 2.50 1.49 0.00 1.56 4.76 6.25 5.00 2.44 0.00 2.67 8.82 4.35 3.49 1.30 0.00 3.39 K intron_retention Hyperkinetic,I_chrX_10148341_10149525,I_chrX_10152994_10153223 chrX - chrX_10135770_10136842 chrX_10135769_10135770;chrX_10136842_10136843 chrX_10135451_10135769;chrX_10136843_10136913 90.00 87.50 NA 90.00 NA NA 95.24 100.00 100.00 100.00 NA 88.89 NA NA NA NA NA NA NA 75.00 NA 88.24 88.89 90.91 100.00 NA 85.71 NA NA NA NA NA NA 90.00 NA 61.11 100.00 70.00 80.00 94.44 NA 90.91 NA 71.43 88.89 NA NA 93.33 NA 90.91 92.86 NA NA NA NA NA NA NA K jcn_only_AD CaMKI,I_chr4_466377_467256,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,RI_chr4_467374_467424,RI_chr4_467482_467543,I_chr4_467862_471815,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_466592_467726;chr4_466377_467726;chr4_467662_467726;chr4_466798_467726;chr4_467273_467726 chr4_466275_467726 chr4_467727_467826;chr4_466269_466274 0.00 5.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention CG8001 chr3L + chr3L_1756537_1756611 chr3L_1756536_1756537;chr3L_1756611_1756612 chr3L_1756350_1756536;chr3L_1756612_1757203 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 2.86 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 12.50 27.27 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 5.13 NA NA 0.00 0.00 5.26 4.55 0.00 0.00 6.45 NA 0.00 0.00 0.00 NA 0.00 0.00 K intron_retention regucalcin,I_chrX_11910759_11910811 chrX + chrX_11908555_11910035 chrX_11908554_11908555;chrX_11910035_11910036 chrX_11908467_11908554;chrX_11910036_11910754 0.21 0.00 0.21 1.36 0.48 0.00 0.80 0.24 0.00 0.00 0.00 0.24 0.00 0.43 0.28 0.49 0.92 0.15 0.00 0.51 0.00 1.01 0.47 0.00 0.63 0.00 0.62 0.57 0.00 0.00 0.00 0.00 1.10 0.33 0.00 0.00 0.34 0.00 0.15 0.39 0.00 0.35 0.43 0.23 0.57 0.00 0.32 0.93 0.42 0.00 0.30 0.00 0.00 0.26 0.00 0.00 0.00 0.00 K intron_retention CG13900,I_chr3L_830745_830907,snoRNA:Psi28S-3308 chr3L - chr3L_832408_832714 chr3L_832407_832408;chr3L_832714_832715 chr3L_832042_832407;chr3L_832715_832960 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17399683_17403392;chr2R_17399683_17401733;chr2R_17399683_17401713 chr2R_17399683_17403481 chr2R_17399598_17399682;chr2R_17403482_17403550 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention DNApol-epsilon,sec13,I_chr3R_19184824_19184875 chr3R + chr3R_19174172_19174233 chr3R_19174171_19174172;chr3R_19174233_19174234 chr3R_19174045_19174171;chr3R_19174234_19180442 5.56 12.00 0.00 41.79 0.00 0.00 10.00 12.50 5.77 14.29 0.00 4.26 3.57 15.38 3.85 6.52 15.00 0.00 2.94 16.67 0.00 26.67 7.50 0.00 0.00 0.00 13.51 0.00 0.00 5.56 13.79 16.67 8.11 5.17 21.74 15.00 3.33 5.56 5.00 2.63 5.88 5.66 11.11 0.00 0.00 12.00 NA 0.00 7.46 NA 0.00 0.00 NA NA 9.38 NA NA 0.00 K jcn_only_AA casp,EI_chr2R_11914764_11914841 chr2R - chr2R_11914784_11914841;chr2R_11914769_11914841 chr2R_11914764_11914841 chr2R_11914842_11914941;chr2R_11914664_11914763 1.32 0.00 0.00 1.96 0.00 0.00 0.98 0.00 0.83 1.72 2.08 0.88 1.72 0.00 0.00 0.00 1.67 1.32 3.33 0.83 0.00 1.71 1.92 0.00 0.00 0.00 2.47 0.00 2.74 2.41 6.90 5.45 1.22 0.00 1.69 3.23 2.63 2.70 2.99 0.67 2.17 1.38 2.13 3.12 0.00 1.02 1.59 7.03 1.69 0.00 0.00 1.82 0.00 2.33 0.00 3.45 0.00 0.00 K cassette Parp chr3RHet + chr3RHet_1937281_2018687 chr3RHet_1937281_1964214;chr3RHet_1964749_2018687 chr3RHet_1964215_1964748 chr3RHet_1936999_1937280;chr3RHet_2018688_2018709 100.00 100.00 92.86 95.45 100.00 93.33 100.00 98.61 100.00 NA 100.00 96.88 100.00 96.00 100.00 98.08 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 85.71 100.00 100.00 66.67 100.00 97.37 100.00 83.33 100.00 100.00 80.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 K alternative_acceptor I_chr2R_5857058_5857250,I_chr2R_5857078_5857245,CG12134 chr2R + chr2R_5858927_5858984 chr2R_5858927_5858981 chr2R_5858680_5858926;chr2R_5858985_5859948 98.61 91.67 92.86 90.48 100.00 88.89 100.00 100.00 100.00 NA 100.00 92.00 100.00 100.00 100.00 100.00 100.00 93.33 93.75 97.22 100.00 NA 93.33 100.00 NA NA 100.00 91.67 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 91.67 92.86 94.12 94.44 NA 100.00 100.00 100.00 100.00 91.67 100.00 88.89 96.00 95.00 93.75 88.89 95.00 88.89 93.75 NA 100.00 95.45 K intron_retention spn-B,RI_chr3R_10154615_10155360 chr3R + chr3R_10154998_10155360 chr3R_10154997_10154998;chr3R_10155360_10155361 chr3R_10154668_10154997;chr3R_10155361_10155460 100.00 NA NA 100.00 NA NA NA 88.89 100.00 NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA 88.89 NA NA 100.00 100.00 NA NA NA NA NA NA NA NA 91.67 N alternative_donor I_chrX_4000307_4003527,CG4857 chrX + chrX_4011315_4011996;chrX_4011429_4011996;chrX_4011270_4011996 chrX_4011929_4011996 chrX_4011997_4012308;chrX_4011093_4011269 73.68 73.68 78.95 58.33 62.50 85.71 68.97 60.53 58.18 58.33 75.00 73.17 84.21 68.75 78.26 78.57 83.33 52.00 70.83 75.68 90.00 66.67 60.53 84.21 85.71 70.00 75.00 91.67 100.00 60.71 76.00 90.00 51.61 72.73 86.67 61.90 80.95 82.35 55.17 58.14 90.91 63.04 52.38 75.00 90.91 73.68 81.25 70.83 52.17 75.00 64.52 68.75 71.43 90.00 64.29 75.00 69.23 76.92 K intron_retention cul-2,I_chr2L_21659273_21659499,I_chr2L_21659273_21659705,I_chr2L_21659761_21659839,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21659273_21659839 chr2L_21659272_21659273;chr2L_21659839_21659840 chr2L_21659173_21659272;chr2L_21659840_21659939 4.17 2.35 4.11 7.20 0.00 2.86 4.69 7.00 6.21 0.00 3.28 3.23 10.61 3.57 4.21 5.88 3.45 3.28 4.11 3.92 2.99 3.17 4.37 3.17 5.45 2.35 7.62 11.46 7.41 8.16 6.17 2.78 4.35 4.39 2.74 3.70 4.76 3.91 6.15 4.46 4.17 4.17 4.17 3.15 0.00 4.76 1.49 12.82 3.03 1.32 4.93 8.60 4.44 1.82 5.95 1.32 4.60 7.41 K cassette Cf2 chr2L - chr2L_4879197_4881214 chr2L_4879197_4880377;chr2L_4880473_4881214 chr2L_4880378_4880472 chr2L_4878850_4879196;chr2L_4881215_4882365 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 84.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 93.75 100.00 100.00 100.00 100.00 94.12 100.00 100.00 92.86 100.00 100.00 94.44 100.00 100.00 K intron_retention scrib,RI_chr3R_22402364_22402676,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22402364_22404442 chr3R_22402363_22402364;chr3R_22404442_22404443 chr3R_22402305_22402363;chr3R_22404443_22404553 29.59 7.14 NA NA NA NA NA NA NA NA NA 24.00 NA NA NA NA NA NA NA 25.00 NA NA 20.69 15.00 41.67 36.36 29.17 42.86 61.11 NA NA NA 43.75 26.67 26.32 13.79 16.67 15.79 29.17 30.00 50.00 40.00 NA 27.78 76.47 40.00 30.77 35.71 NA 42.86 22.73 NA NA 42.86 NA NA 21.43 60.00 K intron_retention hipk,RI_chr3L_548068_552227 chr3L + chr3L_543278_547481 chr3L_543277_543278;chr3L_547481_547482 chr3L_543059_543277;chr3L_547482_547580 0.00 3.33 4.00 0.00 0.00 5.71 2.41 0.71 0.00 NA 0.00 3.51 3.28 0.00 2.94 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 NA 0.00 0.00 0.00 NA 0.00 1.92 0.00 0.00 NA NA NA 7.50 NA 2.90 2.27 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K alternative_donor RpL15 chr3LHet + chr3LHet_2397992_2398049;chr3LHet_2397859_2398049 chr3LHet_2397820_2398049 chr3LHet_2398050_2398052;chr3LHet_2397802_2397819 11.11 0.00 0.00 28.07 25.00 8.33 1.16 17.95 2.86 30.77 16.67 8.33 0.00 4.76 12.50 8.51 10.00 12.50 17.65 4.35 14.29 19.15 9.09 0.00 0.00 8.33 0.00 39.13 25.00 11.11 31.91 47.62 30.77 20.00 9.09 10.00 11.11 20.00 0.00 47.46 35.48 31.03 9.09 40.00 23.53 21.21 10.00 37.84 17.39 0.00 0.00 0.00 63.64 11.11 9.09 6.67 0.00 46.67 K jcn_only_AA Hcf,I_chr4_384272_384649,I_chr4_391984_392875 chr4 + chr4_384266_384649 chr4_384266_384493 chr4_384172_384265;chr4_384650_384651 95.90 91.43 98.36 95.24 97.50 92.50 97.50 94.05 95.76 NA 97.30 92.86 93.48 95.35 96.55 91.80 94.74 100.00 98.25 94.38 97.30 NA 95.45 96.77 100.00 97.92 94.00 NA 91.67 91.67 97.73 NA 100.00 89.02 NA 96.15 97.62 92.59 100.00 94.64 NA 97.78 100.00 100.00 NA NA NA 100.00 96.04 91.30 93.75 100.00 NA NA 95.45 NA NA 95.65 K intron_retention CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8174699_8176572 chr2L_8174698_8174699;chr2L_8176572_8176573 chr2L_8174536_8174698;chr2L_8176573_8176806 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.62 0.00 1.57 0.00 0.00 0.72 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 K jcn_only_AA CG11089 chr3R + chr3R_20702857_20704778 chr3R_20702857_20702940 chr3R_20702788_20702856;chr3R_20704779_20704841 0.00 NA NA 0.00 NA NA NA 2.04 1.92 NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 2.44 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 4.35 NA K intron_retention Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8102519_8102597 chr2L_8102518_8102519;chr2L_8102597_8102598 chr2L_8102300_8102518;chr2L_8102598_8103181 45.80 NA NA NA NA NA NA 72.73 46.67 16.67 NA 46.15 NA NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA 88.89 NA NA NA NA NA 45.45 NA 16.67 53.85 NA NA NA NA 41.67 NA NA NA NA NA NA 69.23 NA NA NA NA NA 45.45 NA NA NA K jcn_only_AD CG10737 chr2R + chr2R_15062592_15063752;chr2R_15062814_15063752 chr2R_15062754_15063752 chr2R_15063753_15063852;chr2R_15062387_15062591 34.62 NA NA 50.00 NA NA 18.00 NA 33.33 NA NA NA NA NA NA NA NA NA NA 28.57 NA 50.00 NA NA NA NA NA NA NA NA NA NA 69.23 50.00 NA NA NA NA NA NA NA 32.00 NA NA 26.32 NA NA 40.00 34.62 NA NA NA NA NA NA NA 30.00 37.50 K cassette elav chrX - chrX_413276_417018 chrX_413276_415472;chrX_415730_417018 chrX_415473_415729 chrX_409684_413275;chrX_417019_417244 100.00 100.00 100.00 91.67 100.00 100.00 88.89 100.00 94.12 100.00 100.00 93.33 100.00 100.00 100.00 100.00 88.89 85.71 88.89 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 94.12 93.75 100.00 100.00 NA 100.00 NA 93.33 90.91 93.33 80.00 100.00 100.00 100.00 100.00 95.24 93.75 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 K cassette CG5315 chr3R - chr3R_18371193_18372433 chr3R_18371193_18371406;chr3R_18371506_18372433 chr3R_18371407_18371505 chr3R_18370840_18371192;chr3R_18372434_18372845 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.81 100.00 100.00 100.00 100.00 100.00 100.00 98.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention I_chr3R_261173_261244,CG14650,RI_chr3R_265878_265942 chr3R + chr3R_265482_265538 chr3R_265481_265482;chr3R_265538_265539 chr3R_263803_265481;chr3R_265539_265692 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9390195;chr2R_9389597_9390151;chr2R_9389597_9389940;chr2R_9389597_9390293;chr2R_9389597_9389751;chr2R_9389597_9390264;chr2R_9389597_9389753;chr2R_9389597_9389757 chr2R_9389597_9389907 chr2R_9389497_9389596;chr2R_9390294_9390295 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.88 1.39 3.92 1.20 0.00 0.00 0.00 1.06 1.75 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 1.67 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 1.49 1.39 2.38 0.00 0.00 0.00 K alternative_acceptor Fmr1,I_chr3R_5930712_5930781,I_chr3R_5934794_5935245,I_chr3R_5934801_5935537 chr3R - chr3R_5930712_5930790 chr3R_5930733_5930790 chr3R_5930791_5930881;chr3R_5930612_5930711 98.06 98.86 98.06 97.59 97.65 98.70 100.00 99.35 99.12 94.20 97.96 96.00 97.67 98.75 97.17 98.20 95.12 98.23 99.01 99.02 99.00 100.00 97.41 95.79 96.10 96.36 98.10 95.35 95.74 96.69 96.85 97.78 99.34 98.59 97.14 97.09 99.21 97.56 98.64 98.35 100.00 98.03 98.67 98.90 98.68 95.29 96.47 97.06 97.69 98.57 99.12 98.28 100.00 97.44 98.33 92.31 96.72 98.94 K alternative_donor rudimentary,I_chrX_16561903_16561969 chrX + chrX_16550106_16550417 chrX_16550118_16550417 chrX_16550418_16551189;chrX_16550095_16550105 90.00 NA NA NA NA NA NA 100.00 80.00 NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG1667,I_chr2R_5731409_5731485,RI_chr2R_5731409_5731653,I_chr2R_5732410_5732504 chr2R + chr2R_5731409_5731464 chr2R_5731408_5731409;chr2R_5731464_5731465 chr2R_5731344_5731408;chr2R_5731465_5731904 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 6.25 5.88 5.56 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.52 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 K intron_retention RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817,snoRNA:Psi28S-2444 chr2R + chr2R_15330604_15330817 chr2R_15330603_15330604;chr2R_15330817_15330818 chr2R_15330318_15330603;chr2R_15330818_15330917 0.05 0.04 0.03 0.06 0.09 0.05 0.15 0.03 0.07 0.04 0.04 0.05 0.06 0.09 0.03 0.03 0.00 0.03 0.00 0.03 0.06 0.21 0.06 0.06 0.06 0.06 0.09 0.27 0.15 0.05 0.16 0.00 0.04 0.05 0.07 0.05 0.08 0.03 0.07 0.07 0.07 0.07 0.05 0.05 0.04 0.04 0.08 0.10 0.11 0.05 0.07 0.00 0.06 0.04 0.02 0.06 0.05 0.05 K intron_retention CG11753 chr3R + chr3R_4479200_4479267 chr3R_4479199_4479200;chr3R_4479267_4479268 chr3R_4479081_4479199;chr3R_4479268_4479569 0.00 0.00 0.00 3.92 0.00 0.00 0.00 1.37 2.56 0.00 3.77 2.38 0.00 0.00 0.00 0.00 2.04 0.00 0.00 1.42 0.00 0.00 1.52 0.99 1.92 0.00 7.89 18.75 2.86 0.00 0.00 1.32 0.00 1.27 0.00 2.33 0.00 2.90 0.00 2.20 1.59 2.41 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 K intron_retention betaTub97EF chr3R - chr3R_23793314_23794648 chr3R_23793313_23793314;chr3R_23794648_23794649 chr3R_23792991_23793313;chr3R_23794649_23794913 0.00 0.00 0.00 1.68 0.75 0.00 0.00 0.00 0.28 0.00 1.57 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Mdh,grass chr3R + chr3R_22983840_22983913 chr3R_22983839_22983840;chr3R_22983913_22983914 chr3R_22983602_22983839;chr3R_22983914_22984086 1.71 1.21 0.00 1.84 1.32 0.67 0.93 0.87 0.71 3.64 1.92 0.44 0.66 1.37 0.90 0.58 0.41 0.00 1.05 0.63 1.12 2.80 2.00 2.34 4.74 2.88 2.35 1.99 6.80 1.77 3.67 2.63 3.64 0.65 3.05 2.06 2.89 2.18 1.52 2.72 4.48 0.99 1.09 2.68 1.71 3.96 1.53 5.02 1.05 1.47 1.93 4.49 0.71 2.21 0.68 2.23 0.39 0.78 K mutually_exclusive CG34413,I_chr2R_20771136_20772048,I_chr2R_20772104_20773774,RI_chr2R_20772104_20774745,C_chr2R_20772691_20773500,I_chr2R_20773500_20774745 chr2R + chr2R_20771136_20772048,chr2R_20773500_20774745 chr2R_20771136_20771196,chr2R_20771258_20774745 chr2R_20772049_20773499 chr2R_20771197_20771257 chr2R_20771036_20771135;chr2R_20774746_20774845 85.71 88.89 94.74 69.23 93.33 87.50 76.00 90.00 87.50 57.14 61.11 83.33 78.57 90.00 85.71 87.50 85.71 73.68 90.91 91.89 88.89 96.47 85.71 92.11 79.17 51.52 90.91 60.00 65.38 82.14 91.67 72.73 93.55 76.67 93.75 54.29 77.78 85.71 79.41 95.45 77.14 90.00 76.47 94.29 87.50 90.32 93.33 80.85 92.00 83.87 81.25 84.62 87.50 85.00 78.95 92.00 77.27 93.94 K intron_retention nimB1 chr2L + chr2L_13964739_13964793 chr2L_13964738_13964739;chr2L_13964793_13964794 chr2L_13964670_13964738;chr2L_13964794_13965122 52.86 50.00 60.00 62.50 58.82 NA 61.11 44.74 51.35 NA 66.67 62.50 40.00 57.89 50.00 73.68 33.33 55.00 63.64 44.64 NA NA 50.00 45.45 88.89 70.59 66.67 NA NA 37.50 63.83 41.18 46.15 57.69 NA 60.00 18.52 53.85 57.89 55.56 50.00 51.22 76.47 23.08 63.64 52.38 15.38 48.28 51.52 87.50 61.11 36.36 26.32 43.75 68.75 53.33 32.35 38.10 K intron_retention CG17294,Rcd4 chr2L + chr2L_8377173_8377224 chr2L_8377172_8377173;chr2L_8377224_8377225 chr2L_8377069_8377172;chr2L_8377225_8377521 8.33 5.71 9.68 27.27 4.76 15.15 13.21 8.33 10.71 0.00 0.00 8.33 8.33 8.33 3.23 5.63 0.00 0.00 10.71 7.23 0.00 10.53 11.76 7.69 24.00 22.22 18.42 16.88 19.51 9.52 13.79 9.09 NA 10.00 9.76 36.00 7.55 1.82 7.04 5.71 29.17 7.84 13.64 1.94 0.00 8.47 6.38 2.94 8.47 7.41 6.56 6.25 6.67 7.32 19.51 2.86 8.33 7.14 K intron_retention Rbcn-3A chrX - chrX_6137544_6137622 chrX_6137543_6137544;chrX_6137622_6137623 chrX_6137187_6137543;chrX_6137623_6137847 0.00 0.00 0.00 1.26 0.00 0.00 0.00 0.00 1.04 0.00 0.00 1.33 0.00 0.00 0.00 1.03 0.00 2.22 2.15 1.47 0.00 0.00 0.00 0.00 0.00 0.00 2.65 2.44 0.00 0.00 0.00 0.00 1.10 1.25 0.97 1.60 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 1.03 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 N jcn_only_AA CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789733_9789790;chr2L_9789740_9789790;chr2L_9789694_9789790;chr2L_9789751_9789790;chr2L_9789598_9789790 chr2L_9789718_9789790 chr2L_9789791_9789832;chr2L_9789594_9789597 13.86 13.64 11.11 12.16 18.27 10.43 12.24 12.62 15.65 6.90 15.38 11.30 15.04 16.89 16.67 10.07 16.95 19.13 8.00 14.29 15.58 11.02 17.50 9.80 14.29 18.89 17.72 19.23 17.17 13.86 12.74 17.72 11.56 18.90 10.39 16.67 12.96 9.09 11.67 10.66 11.50 11.79 17.80 10.45 10.84 16.67 14.93 10.73 15.81 11.29 10.91 12.22 19.23 11.11 18.42 15.15 19.30 17.05 K intron_retention CG1021,RI_chr3R_2217711_2231463,I_chr3R_2218682_2231463,I_chr3R_2219634_2231390,I_chr3R_2231383_2231463 chr3R - chr3R_2215847_2215923 chr3R_2215846_2215847;chr3R_2215923_2215924 chr3R_2215733_2215846;chr3R_2215924_2216016 0.00 2.04 0.00 0.00 0.00 2.50 4.41 0.00 1.05 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 3.39 0.00 1.37 7.69 4.76 2.27 4.48 20.59 2.86 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 2.65 1.19 2.53 0.00 2.33 0.00 0.99 0.00 2.50 0.00 0.00 0.00 0.00 1.32 0.00 0.00 1.82 0.00 0.47 K intron_retention CG10137,CG33116 chr2L + chr2L_19528946_19529093 chr2L_19528945_19528946;chr2L_19529093_19529094 chr2L_19528778_19528945;chr2L_19529094_19530075 5.56 NA 0.00 NA NA NA NA 0.00 6.67 NA NA 5.56 NA 0.00 NA NA NA NA NA 0.00 NA NA NA 20.00 NA NA NA NA NA NA 0.00 NA 7.69 4.76 NA NA 23.08 NA NA 0.00 NA 6.45 NA NA NA NA NA 0.00 16.00 NA 12.50 NA NA NA 17.65 NA NA NA K intron_retention msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585739_2586402 chr3L_2585738_2585739;chr3L_2586402_2586403 chr3L_2585639_2585738;chr3L_2586403_2586502 6.67 6.94 6.92 5.85 1.23 6.43 9.73 5.10 6.13 10.00 6.67 5.34 7.14 5.36 7.56 6.37 6.86 8.66 7.14 5.48 6.67 13.01 6.12 9.47 12.26 8.18 9.41 8.00 11.11 6.60 5.39 8.77 8.39 6.56 5.83 6.45 5.81 5.94 8.05 6.57 9.71 7.09 9.17 7.41 2.53 4.84 13.46 5.81 7.87 2.70 6.96 6.52 7.41 5.41 4.83 7.23 2.86 6.31 K intron_retention TepIV,EI_chr2L_19548696_19549582 chr2L + chr2L_19556093_19556161 chr2L_19556092_19556093;chr2L_19556161_19556162 chr2L_19553979_19556092;chr2L_19556162_19556460 0.00 0.00 0.00 0.46 0.00 0.00 0.46 0.37 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.70 1.97 0.71 0.00 0.00 0.45 0.00 0.40 0.00 0.47 0.00 0.00 0.19 0.00 0.00 0.15 0.00 0.16 0.17 0.26 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 N alternative_acceptor Rpn2,CG11897 chr3R + chr3R_24980396_24980472 chr3R_24980396_24980457 chr3R_24979418_24980395;chr3R_24980473_24981742 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 67.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor ran,I_chrX_11040449_11042518,I_chrX_11040462_11041873,I_chrX_11040462_11042000 chrX - chrX_11040462_11041873;chrX_11040462_11042518 chrX_11040462_11042000 chrX_11040362_11040461;chrX_11042519_11042618 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.18 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention CG17159,CG17162,noncoding_25215 chrXHet - chrXHet_66052_66121 chrXHet_66051_66052;chrXHet_66121_66122 chrXHet_64335_66051;chrXHet_66122_66324 85.42 100.00 100.00 91.76 100.00 76.92 88.52 84.00 79.80 100.00 100.00 76.47 100.00 82.93 85.42 82.43 100.00 76.92 100.00 80.39 100.00 100.00 100.00 82.98 100.00 100.00 100.00 100.00 100.00 78.05 79.55 68.97 82.67 84.13 100.00 80.00 100.00 100.00 78.72 73.68 100.00 81.11 100.00 82.35 75.68 85.00 70.73 73.17 86.57 81.25 81.25 81.40 100.00 100.00 100.00 100.00 80.43 75.00 K intron_retention CG10038 chr3R - chr3R_8175705_8175916 chr3R_8175704_8175705;chr3R_8175916_8175917 chr3R_8175517_8175704;chr3R_8175917_8176032 0.00 0.00 5.41 4.17 0.00 0.00 0.00 3.85 0.00 NA 0.00 0.00 11.11 5.26 2.70 0.00 0.00 0.00 4.17 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.53 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 2.70 1.89 K intron_retention Vps16A chr3R + chr3R_5093159_5093210 chr3R_5093158_5093159;chr3R_5093210_5093211 chr3R_5092969_5093158;chr3R_5093211_5093481 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 1.49 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.98 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.41 0.71 0.00 1.03 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 1.23 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette RI_chrX_8468338_8469380,I_chrX_8468338_8477573,CG12065,I_chrX_8469524_8477579,CE_chrX_8469528_8477573 chrX + chrX_8468441_8477573 chrX_8468441_8469383;chrX_8469524_8477573 chrX_8469384_8469523 chrX_8468351_8468440;chrX_8477574_8477673 86.70 85.14 91.61 92.82 92.50 88.19 93.23 94.01 92.43 80.25 95.74 89.58 79.25 85.62 91.30 90.87 90.44 85.50 96.08 88.73 93.23 72.10 81.35 85.26 83.17 92.91 88.20 85.15 62.03 85.92 90.64 85.47 87.32 92.98 81.82 94.34 86.70 82.86 76.44 79.68 89.66 92.65 91.94 84.08 88.89 85.95 78.19 88.28 91.11 84.44 82.39 80.56 79.49 78.26 87.71 84.50 83.96 85.10 K alternative_acceptor Aut1,I_chr3L_18742839_18742896,RI_chr3L_18742839_18742911 chr3L + chr3L_18742839_18742892;chr3L_18742839_18742911 chr3L_18742839_18742896 chr3L_18742770_18742838;chr3L_18742912_18742977 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor sqd,I_chr3R_9462248_9471474,I_chr3R_9468150_9468236,I_chr3R_9470417_9471474 chr3R - chr3R_9468150_9468236 chr3R_9468150_9468233 chr3R_9468050_9468149;chr3R_9468237_9468292 99.25 99.47 98.74 97.38 100.00 99.34 99.25 100.00 99.47 99.06 100.00 98.91 100.00 99.01 98.61 99.13 100.00 97.98 98.72 98.86 100.00 99.48 98.91 98.96 99.62 98.80 98.25 100.00 99.57 99.32 97.94 99.37 99.33 98.48 100.00 98.07 99.45 98.34 99.49 99.54 99.19 99.57 97.80 99.47 99.01 100.00 100.00 99.38 98.90 99.17 98.01 99.30 99.46 99.08 100.00 97.37 99.22 99.24 K intron_retention Pole2 chr3L - chr3L_5889717_5889773 chr3L_5889716_5889717;chr3L_5889773_5889774 chr3L_5888717_5889716;chr3L_5889774_5890533 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 3.45 0.00 10.53 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA RpLP1,I_chr2L_420147_420282,I_chr2L_420147_420300,E_chr2L_420151_420297,I_chr2L_420231_420291,E_chr2L_422193_422242 chr2L + chr2L_420147_420300 chr2L_420147_420291 chr2L_420131_420146;chr2L_420301_420382 100.00 100.00 100.00 99.99 100.00 99.99 100.00 99.99 100.00 100.00 100.00 99.98 100.00 99.99 99.99 100.00 100.00 99.99 100.00 100.00 99.98 100.00 100.00 100.00 99.99 99.99 99.99 100.00 99.98 99.99 100.00 100.00 100.00 100.00 99.98 100.00 100.00 100.00 99.99 99.99 100.00 100.00 99.99 99.99 100.00 99.99 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.99 99.99 100.00 99.99 99.99 K intron_retention lt,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22832038_22832085 chr2L_22832037_22832038;chr2L_22832085_22832086 chr2L_22831938_22832037;chr2L_22832086_22832154 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 1.79 2.44 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Chit chr2R + chr2R_12579405_12579852 chr2R_12579404_12579405;chr2R_12579852_12579853 chr2R_12579203_12579404;chr2R_12579853_12580428 0.00 0.00 0.00 0.03 0.00 0.06 0.10 0.00 0.03 0.00 0.00 0.03 0.06 0.06 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.05 0.00 0.05 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8405,I_chr2R_11936911_11936991 chr2R + chr2R_11945083_11945959 chr2R_11945082_11945083;chr2R_11945959_11945960 chr2R_11944431_11945082;chr2R_11945960_11948004 0.00 0.00 0.00 2.08 0.00 2.08 6.67 8.47 0.98 0.00 0.00 1.23 0.00 0.00 2.17 0.00 2.70 0.00 0.00 0.00 0.00 0.00 1.08 1.15 3.51 0.00 0.00 2.94 5.56 0.00 0.00 0.00 3.03 0.00 0.00 0.00 1.75 3.12 2.27 0.00 0.00 2.97 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 K alternative_donor CG1646,I_chr3R_24640561_24640869,I_chr3R_24641816_24641874 chr3R + chr3R_24641449_24641874 chr3R_24641816_24641874 chr3R_24641875_24641974;chr3R_24641204_24641448 100.00 98.31 98.36 100.00 100.00 100.00 98.31 98.82 99.08 100.00 100.00 99.09 97.22 100.00 100.00 100.00 97.56 100.00 100.00 99.27 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 89.66 98.65 100.00 100.00 99.32 100.00 100.00 100.00 100.00 98.28 100.00 97.98 100.00 99.19 100.00 100.00 98.68 100.00 100.00 99.25 99.19 100.00 98.70 100.00 98.18 100.00 100.00 98.44 100.00 99.38 K intron_retention CG10077,I_chr3L_6946805_6946872 chr3L - chr3L_6944546_6946872 chr3L_6944545_6944546;chr3L_6946872_6946873 chr3L_6944367_6944545;chr3L_6946873_6946972 12.30 12.21 18.18 22.86 17.89 23.76 23.88 29.02 24.81 8.06 16.67 10.27 20.61 21.05 29.41 33.93 31.18 30.23 34.94 21.79 17.44 3.85 10.20 9.01 5.88 22.22 14.00 17.31 6.06 8.76 26.19 5.69 5.32 29.34 12.21 16.27 9.95 9.03 6.56 6.59 3.42 19.64 25.61 15.60 4.65 12.17 8.93 3.82 30.68 12.30 12.29 12.23 11.30 8.25 25.74 10.70 10.33 7.80 K alternative_acceptor CG3056,REI_chrX_1265808_1265906 chrX + chrX_1265808_1265947 chrX_1265808_1265906 chrX_1265708_1265807;chrX_1265948_1266006 0.94 0.00 2.94 3.51 0.00 0.00 5.45 2.94 0.94 3.33 0.00 4.05 0.00 0.00 1.69 0.00 0.00 0.00 0.00 1.87 0.00 2.67 4.17 0.00 5.88 2.44 2.63 9.68 0.00 0.00 8.11 3.45 0.00 3.77 2.22 0.00 3.33 2.50 0.00 1.25 0.00 2.44 0.00 0.00 4.65 0.00 0.00 0.00 4.76 4.35 0.00 0.00 0.00 3.45 0.00 1.92 0.00 1.92 K cassette smi35A,E_chr2L_14222082_14233578,E_chr2L_14222082_14233893,RI_chr2L_14233579_14233647 chr2L - chr2L_14222082_14233893;chr2L_14222082_14233578;chr2L_14222082_14233647 chr2L_14222082_14229458;chr2L_14229537_14233893,chr2L_14229537_14233578,chr2L_14229537_14233647 chr2L_14229459_14229536 chr2L_14222060_14222081;chr2L_14233894_14233993 66.97 NA NA NA NA NA 50.00 87.50 75.00 NA NA NA NA NA NA NA NA NA NA NA NA 71.43 NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 62.50 NA NA NA NA NA NA NA NA NA K intron_retention CG32174,CG33052 chr3L - chr3L_17421662_17421745 chr3L_17421661_17421662;chr3L_17421745_17421746 chr3L_17420962_17421661;chr3L_17421746_17421921 0.00 2.70 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.26 5.56 0.00 2.78 3.33 0.00 3.85 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 4.08 0.00 2.94 2.47 4.17 3.64 0.00 0.00 1.32 0.00 0.00 2.38 3.77 0.00 0.00 0.00 2.17 0.00 0.00 0.00 2.50 0.00 K intron_retention CG30005,I_chr2R_5495525_5495581 chr2R + chr2R_5495523_5495581 chr2R_5495522_5495523;chr2R_5495581_5495582 chr2R_5495425_5495522;chr2R_5495582_5495681 2.83 0.00 5.26 9.09 0.00 3.57 10.87 8.51 10.42 NA 0.00 5.26 0.00 7.41 3.03 4.44 0.00 0.00 6.25 2.04 3.85 0.00 8.47 0.00 0.00 9.09 5.71 12.50 7.14 0.00 4.62 6.67 0.00 10.20 3.23 0.00 0.00 0.00 0.00 0.00 8.00 7.27 0.00 0.00 0.00 0.00 0.00 6.67 2.63 0.00 7.69 0.00 0.00 0.00 0.00 10.64 7.32 17.86 K intron_retention CG30291,grau chr2R - chr2R_16896710_16896760 chr2R_16896709_16896710;chr2R_16896760_16896761 chr2R_16895867_16896709;chr2R_16896761_16896935 0.00 0.00 0.00 0.00 0.00 4.76 0.00 4.44 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 2.56 NA 0.00 3.12 0.00 4.00 0.00 0.00 0.00 8.70 3.33 0.00 0.00 5.26 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 3.23 0.00 0.00 K intron_retention I_chr3R_22696095_22697413,Rb97D chr3R - chr3R_22699401_22699581 chr3R_22699400_22699401;chr3R_22699581_22699582 chr3R_22698154_22699400;chr3R_22699582_22699720 58.71 64.00 77.78 36.59 57.14 50.00 48.48 60.61 68.75 9.68 38.46 66.67 77.78 68.75 68.18 73.33 59.09 52.94 80.00 71.43 NA 90.00 43.90 53.33 42.86 56.25 43.33 50.00 56.25 33.33 78.95 66.67 43.75 77.78 68.75 57.69 45.45 39.13 41.18 55.17 63.64 75.00 68.18 50.00 63.64 63.16 43.33 80.00 63.04 42.86 64.29 58.33 46.15 55.00 61.90 53.85 70.83 71.43 K alternative_donor CG3508 chr3R + chr3R_10486021_10486096 chr3R_10486033_10486096 chr3R_10486097_10486164;chr3R_10485968_10486020 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 NA 100.00 100.00 100.00 100.00 93.33 100.00 NA 100.00 100.00 100.00 100.00 95.65 100.00 100.00 NA 100.00 93.33 94.12 94.74 90.91 100.00 100.00 91.67 100.00 100.00 93.75 92.86 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 92.31 94.12 K cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389762_2395659;chrX_2388671_2395659;chrX_2392665_2395659;chrX_2391522_2395659;chrX_2387249_2395659 chrX_2387249_2393243,chrX_2388671_2393243,chrX_2389762_2393243,chrX_2392665_2393243,chrX_2391522_2393243;chrX_2393712_2395659 chrX_2393244_2393711 chrX_2387149_2387248;chrX_2395660_2395759 7.14 6.90 2.78 0.95 2.08 2.90 4.62 4.67 5.21 28.57 11.43 37.97 3.39 6.35 3.03 4.29 1.41 2.70 5.49 7.69 8.11 4.26 9.62 9.62 7.50 3.12 7.79 12.50 5.00 7.46 6.35 10.00 8.70 4.86 6.00 50.72 13.39 8.89 7.78 11.86 6.25 3.38 5.97 8.24 7.14 8.33 20.00 8.78 5.15 6.67 8.77 5.00 8.47 10.00 2.73 10.53 16.67 16.13 K alternative_donor CG42533,EI_chr2L_7473200_7473297,RI_chr2L_7473200_7473419,F_chr2L_7476906_7476978 chr2L - chr2L_7473200_7473656;chr2L_7473200_7473770;chr2L_7473200_7473419 chr2L_7473200_7473297 chr2L_7473100_7473199;chr2L_7473771_7473889 39.13 45.95 50.00 52.83 38.46 53.57 51.92 56.72 52.56 16.00 60.00 55.88 60.00 77.14 27.91 36.17 45.45 53.12 50.00 35.42 52.00 34.78 27.12 39.13 36.00 41.18 41.67 56.00 22.22 51.28 28.85 32.43 29.17 48.39 33.33 20.51 29.17 40.74 34.09 29.03 36.36 36.36 42.42 29.17 23.68 30.36 36.84 27.27 48.10 50.00 44.44 42.31 19.23 41.38 42.31 27.50 32.56 31.34 K intron_retention I-2 chr3L - chr3L_9829247_9829621 chr3L_9829246_9829247;chr3L_9829621_9829622 chr3L_9829149_9829246;chr3L_9829622_9829980 2.50 0.00 0.00 2.60 0.00 2.94 3.75 2.50 3.36 4.17 0.00 3.95 0.00 2.33 2.90 1.56 0.00 2.13 0.00 2.50 0.00 6.98 2.99 1.64 3.03 4.44 8.96 0.00 0.00 5.41 3.92 0.00 5.56 3.77 0.00 10.42 5.00 2.44 4.92 1.32 3.45 3.33 0.00 3.85 2.13 5.77 0.00 0.00 4.76 1.92 4.69 3.33 0.00 0.00 3.39 4.65 0.00 0.00 K alternative_acceptor CG10732,I_chr3L_13438999_13439071 chr3L + chr3L_13438740_13438838 chr3L_13438740_13438835 chr3L_13437468_13438739;chr3L_13438839_13438998 85.71 86.67 70.00 94.44 81.82 90.91 84.62 73.33 95.45 76.92 88.89 85.00 NA 87.50 90.91 76.92 87.50 85.71 NA 90.32 75.00 95.83 92.31 94.44 95.83 NA 88.89 76.92 85.71 80.00 76.92 100.00 85.11 80.95 93.33 94.12 85.29 84.00 88.24 87.50 92.31 82.61 NA 76.00 70.83 90.48 86.67 87.50 78.95 95.00 84.62 73.33 77.78 84.62 72.73 77.78 77.78 88.57 K intron_retention M(2)21AB,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_112020_112689 chr2L_112019_112020;chr2L_112689_112690 chr2L_111922_112019;chr2L_112690_112789 0.37 2.59 0.00 0.49 0.00 0.00 2.48 0.44 1.06 0.00 0.00 0.37 0.83 0.00 0.00 0.00 1.47 0.00 0.00 0.58 0.00 0.00 0.34 0.91 1.18 0.98 0.46 1.42 3.79 0.00 1.32 0.00 0.88 0.45 0.00 0.00 0.63 0.00 0.00 1.05 0.00 0.32 2.02 0.42 0.73 1.28 1.20 1.85 1.37 0.83 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG4389,I_chr2L_9576230_9576665 chr2L - chr2L_9576230_9576665;chr2L_9576230_9576635 chr2L_9576230_9576517 chr2L_9576130_9576229;chr2L_9576666_9576755 100.00 98.01 98.00 100.00 100.00 100.00 100.00 99.61 99.21 100.00 100.00 100.00 96.32 100.00 100.00 100.00 98.44 99.14 100.00 99.02 100.00 100.00 100.00 100.00 100.00 99.19 100.00 100.00 98.20 100.00 100.00 100.00 99.11 100.00 100.00 100.00 96.47 100.00 98.71 99.54 96.83 99.63 99.08 100.00 98.84 98.85 100.00 99.21 99.53 100.00 100.00 99.22 100.00 100.00 100.00 99.25 98.80 100.00 K jcn_only_AA CG31064,RI_chr3R_23056388_23064246,I_chr3R_23069667_23070365 chr3R - chr3R_23057831_23058194 chr3R_23057922_23058194 chr3R_23058195_23058597;chr3R_23056610_23057830 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG4119 chrX + chrX_5560502_5560589 chrX_5560501_5560502;chrX_5560589_5560590 chrX_5560410_5560501;chrX_5560590_5560831 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_donor par-1,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15344481_15347299 chr2R_15347232_15347299 chr2R_15347300_15348121;chr2R_15343700_15344480 9.52 9.38 9.68 8.93 20.00 15.38 6.94 5.48 9.46 65.00 7.41 8.33 6.00 6.82 7.89 5.63 7.50 3.23 6.12 10.29 8.33 11.63 16.67 17.24 14.29 5.41 21.43 35.29 15.00 7.14 8.70 7.69 4.65 7.25 16.67 10.81 19.35 20.00 26.09 11.11 10.00 7.50 8.00 15.38 16.67 8.57 16.67 8.51 9.52 18.75 15.79 15.38 10.53 16.67 6.82 9.52 15.38 5.26 K alternative_acceptor pnt,I_chr3R_19117170_19117217,I_chr3R_19118404_19119566,I_chr3R_19139278_19163617,I_chr3R_19181524_19181702 chr3R - chr3R_19117151_19117217 chr3R_19117170_19117217 chr3R_19117218_19117317;chr3R_19117070_19117150 0.00 0.53 0.00 0.62 0.00 0.00 1.25 0.27 0.00 0.00 0.00 0.31 0.58 0.00 0.50 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.51 0.58 0.00 0.74 0.00 0.35 0.00 0.47 0.00 0.00 0.00 0.00 0.47 0.26 0.62 0.00 0.40 0.38 0.60 0.29 0.26 0.36 0.83 0.00 0.00 0.00 0.00 0.00 0.00 1.11 K jcn_only_AA CG34001,hay chr3L + chr3L_10624296_10627174 chr3L_10624296_10624465 chr3L_10624286_10624295 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA K intron_retention I_chrX_1757755_1757801,Pgam5,I_chrX_1793073_1794406,RI_chrX_1795648_1795745 chrX - chrX_1766937_1767005 chrX_1766936_1766937;chrX_1767005_1767006 chrX_1766389_1766936;chrX_1767006_1767583 21.11 NA NA 62.50 NA NA NA 33.33 NA NA NA 15.00 NA NA 20.00 NA NA NA NA 33.33 NA NA 25.00 9.52 NA NA 77.78 64.71 25.00 NA NA NA NA 7.69 23.53 35.29 NA NA 14.29 13.33 27.27 20.00 NA NA 0.00 22.22 NA 0.00 28.57 13.33 19.05 NA NA NA NA 27.27 5.88 12.50 K intron_retention BRWD3 chr3R + chr3R_20145190_20145313 chr3R_20145189_20145190;chr3R_20145313_20145314 chr3R_20145131_20145189;chr3R_20145314_20145343 6.90 NA NA 17.65 NA NA 6.67 17.65 NA NA NA 0.00 NA NA 0.00 21.43 NA NA NA 16.67 NA NA 0.00 NA NA NA 7.14 NA NA NA NA NA NA 0.00 NA NA NA NA NA 7.14 NA 10.71 NA NA NA NA NA NA 5.88 NA 0.00 NA NA NA NA NA NA NA K alternative_acceptor drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389400_9390195;chr2R_9389714_9390195;chr2R_9389597_9390195 chr2R_9389430_9390195 chr2R_9390196_9390251;chr2R_9389318_9389399 3.03 7.04 3.42 5.29 6.25 1.30 3.66 2.45 1.42 1.96 1.45 4.02 3.03 5.94 2.75 3.94 6.17 2.47 1.45 1.63 5.13 5.68 3.03 6.58 3.64 0.93 4.04 6.15 1.96 5.62 2.46 1.67 5.47 1.08 4.05 1.28 3.39 2.27 3.70 6.57 2.35 2.76 4.60 1.30 1.75 4.81 1.47 2.84 3.74 1.56 1.19 4.76 0.00 0.00 3.88 5.00 2.35 1.97 K intron_retention None chrU + chrU_1178904_1178966 chrU_1178903_1178904;chrU_1178966_1178967 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 98.33 100.00 100.00 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 NA 100.00 100.00 100.00 100.00 K alternative_acceptor His4r chr3R + chr3R_10451538_10451747 chr3R_10451538_10451721 chr3R_10451469_10451537;chr3R_10451748_10451951 0.21 0.89 0.31 0.31 0.00 0.00 1.37 0.20 0.37 0.00 0.47 0.48 0.74 1.00 0.00 0.35 0.00 0.00 0.00 0.36 0.00 0.74 0.00 0.00 1.56 0.83 1.45 5.88 0.70 0.00 0.36 0.00 0.00 0.21 0.00 2.00 1.67 0.00 0.00 1.29 0.00 0.15 0.00 0.00 0.00 0.62 0.92 0.00 0.00 2.54 0.00 0.83 0.00 0.00 0.50 0.50 2.21 0.00 K jcn_only_AD hd chr3R - chr3R_1200113_1200171 chr3R_1200113_1200167 chr3R_1199955_1200112;chr3R_1200172_1200353 8.89 NA 0.00 NA NA NA 5.00 NA NA NA NA 4.00 NA NA NA NA NA NA NA 10.00 NA NA NA 4.76 NA NA NA NA NA NA 52.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 13.04 NA 8.70 NA NA 15.00 NA NA NA 9.09 NA NA NA 20.51 K intron_retention lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3963614_3963797 chr2R_3963613_3963614;chr2R_3963797_3963798 chr2R_3963365_3963613;chr2R_3963798_3963953 0.43 1.97 0.62 1.86 0.00 1.24 1.85 0.88 0.57 0.68 0.00 0.59 0.00 0.00 0.97 0.43 0.00 0.00 0.61 0.83 0.00 0.97 0.74 0.39 0.00 1.61 1.75 3.45 0.52 0.00 1.10 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.60 0.00 0.00 1.30 0.66 0.00 0.00 0.67 0.00 1.03 0.00 0.00 0.36 0.67 0.82 0.00 0.94 0.00 0.53 0.00 K intron_retention yata chr3R + chr3R_25576174_25576233 chr3R_25576173_25576174;chr3R_25576233_25576234 chr3R_25575950_25576173;chr3R_25576234_25576639 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 K alternative_acceptor Nedd4,I_chr3L_17532828_17532882,I_chr3L_17532828_17533787,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17532828_17532882;chr3L_17532828_17533790 chr3L_17532828_17533787 chr3L_17532728_17532827;chr3L_17533791_17533887 5.00 6.25 12.50 3.03 7.14 4.17 6.25 0.00 2.50 6.67 14.29 11.36 0.00 0.00 3.45 0.00 0.00 0.00 0.00 5.41 12.50 12.50 7.14 5.56 0.00 3.85 0.00 15.38 10.71 5.56 0.00 7.69 4.55 6.25 4.76 4.55 3.33 4.00 8.00 6.67 0.00 6.45 0.00 5.00 10.00 14.29 0.00 5.00 2.94 8.33 0.00 0.00 7.14 20.00 0.00 9.09 14.29 27.27 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814174;chr2R_2814327_2814894;chr2R_2815654_2816013;chr2R_2816342_2817753 chr2R_2814175_2814326;chr2R_2814895_2815653;chr2R_2816014_2816341 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 80.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Thiolase chr2R - chr2R_19755287_19755342 chr2R_19755286_19755287;chr2R_19755342_19755343 chr2R_19754124_19755286;chr2R_19755343_19755517 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 1.45 0.00 0.93 0.00 0.00 2.18 3.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.31 0.00 0.36 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG3651,I_chr2L_22124217_22124661,I_chr2L_22124698_22124781 chr2L + chr2L_22124217_22124786;chr2L_22124217_22124661 chr2L_22124217_22124781 chr2L_22124117_22124216;chr2L_22124787_22124881 93.33 95.38 93.22 92.71 92.16 91.30 87.50 93.75 96.12 90.48 95.35 91.35 91.49 90.91 95.31 92.31 91.67 95.59 93.33 93.64 93.02 92.86 91.67 98.75 91.67 94.92 95.35 95.56 92.39 92.45 93.94 96.10 95.24 91.11 90.20 95.56 94.29 94.92 93.75 91.34 93.83 92.98 89.74 94.29 95.35 95.61 92.75 95.08 92.63 91.76 89.02 98.11 93.75 98.31 94.52 92.11 95.65 88.78 K intron_retention CEI_chr3R_10927927_10937314,CG6934 chr3R - chr3R_10937912_10957329 chr3R_10937911_10937912;chr3R_10957329_10957330 chr3R_10937315_10937911;chr3R_10957330_10957448 32.58 26.92 55.88 33.33 40.00 44.44 45.00 41.18 36.36 43.48 23.81 43.28 29.41 48.48 41.03 54.17 35.29 16.92 28.89 45.45 18.18 41.67 48.10 26.83 46.88 52.38 29.31 24.39 15.79 31.82 28.95 NA 26.67 48.72 51.85 23.91 25.86 30.77 33.33 19.40 13.04 41.82 37.50 15.87 NA 5.71 17.65 44.44 46.67 15.38 24.53 41.67 20.00 20.00 45.16 10.53 NA 23.33 K intron_retention CG1275,I_chr3L_2261108_2261339 chr3L - chr3L_2253272_2253328 chr3L_2253271_2253272;chr3L_2253328_2253329 chr3L_2252785_2253271;chr3L_2253329_2253692 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.60 0.00 0.00 1.17 0.83 0.53 0.85 1.02 0.00 0.00 0.00 0.00 1.28 0.00 0.34 0.00 0.00 0.00 0.00 0.67 0.42 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.60 0.27 K jcn_only_AD CG12753,I_chr3R_12265080_12265169,Pak3 chr3R - chr3R_12265080_12265334 chr3R_12265080_12265169 chr3R_12264980_12265079;chr3R_12265335_12266125 0.00 0.00 0.00 3.23 8.00 0.00 1.56 1.92 2.13 0.00 0.00 1.79 10.00 0.00 2.56 0.00 0.00 2.70 0.00 1.20 0.00 4.35 3.16 0.00 2.38 0.00 0.00 NA 3.57 3.92 2.50 0.00 0.00 0.00 0.00 2.78 2.17 0.00 0.00 2.22 0.00 0.00 0.00 0.00 3.85 0.00 7.32 0.00 0.00 0.00 2.53 2.70 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806425_22807235;chr3R_22806425_22809684;chr3R_22806425_22807254 chr3R_22806425_22807258 chr3R_22806325_22806424 3.08 2.26 2.47 2.30 2.25 2.11 2.37 3.76 2.94 4.17 3.12 4.56 3.76 3.42 3.36 3.29 3.26 2.07 3.11 4.61 3.74 4.04 3.85 1.67 2.33 6.12 0.00 NA 2.17 10.00 4.44 4.17 3.65 2.26 2.27 3.19 1.96 3.33 2.63 3.08 2.17 2.66 2.93 3.95 3.23 2.38 0.87 2.21 2.17 3.33 2.14 3.66 3.09 4.94 5.37 2.21 1.87 0.62 K alternative_acceptor CG14712,CG10535,I_chr3R_7498847_7498975 chr3R + chr3R_7477297_7477357 chr3R_7477297_7477345 chr3R_7476710_7477296;chr3R_7477358_7478498 0.60 0.00 2.17 1.72 0.00 2.70 1.59 1.27 0.00 0.00 0.00 0.00 2.94 2.38 2.22 0.00 0.00 3.57 0.00 1.20 3.23 3.85 1.79 3.23 0.00 2.63 0.00 3.12 2.44 0.00 1.52 0.00 2.70 3.17 0.00 0.00 0.00 0.00 0.00 3.57 0.00 1.20 6.25 2.00 0.00 0.00 6.25 1.27 0.00 0.00 2.78 0.00 0.00 NA 3.12 0.00 0.00 0.00 K alternative_donor I_chr2L_19388570_19389922,CG17544 chr2L - chr2L_19393657_19398334;chr2L_19393657_19398350 chr2L_19393657_19398346 chr2L_19393497_19393656;chr2L_19398351_19398401 21.05 19.44 22.31 15.64 12.07 17.70 22.43 24.52 20.55 20.34 17.86 21.05 22.54 22.50 19.66 26.32 17.81 22.86 18.92 22.00 25.32 17.48 20.54 20.54 22.06 16.82 14.29 21.95 16.04 20.80 22.73 19.19 20.22 19.35 21.85 14.81 20.83 26.47 24.05 17.79 21.43 24.68 21.05 23.58 24.60 18.39 23.88 19.49 22.49 21.05 21.10 24.62 18.57 18.60 19.58 21.51 28.21 26.14 K cassette shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9758202_9758798 chr2R_9758202_9758344;chr2R_9758417_9758798 chr2R_9758345_9758416 chr2R_9758027_9758201;chr2R_9758799_9758843 98.83 99.30 96.64 100.00 97.83 99.07 85.71 98.61 98.55 99.22 97.94 99.49 100.00 99.12 97.76 97.94 98.17 97.39 98.06 98.10 97.70 98.39 98.12 100.00 99.08 100.00 96.53 99.38 96.09 99.08 99.33 98.51 98.37 96.34 99.06 96.26 98.83 100.00 99.50 99.53 100.00 99.60 98.97 99.44 96.33 99.07 100.00 100.00 96.84 100.00 97.72 100.00 94.57 98.80 99.33 100.00 95.50 98.61 K intron_retention CG17233,RI_chr3L_20232898_20232962 chr3L - chr3L_20228167_20228234 chr3L_20228166_20228167;chr3L_20228234_20228235 chr3L_20228029_20228166;chr3L_20228235_20228534 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 3.85 NA NA 0.00 NA NA 0.00 NA NA 0.00 0.00 3.45 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA 0.00 N alternative_acceptor REG chrX + chrX_13106992_13107202 chrX_13106992_13107188 chrX_13106497_13106991;chrX_13107203_13108145 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG32732,I_chrX_6852961_6853021 chrX - chrX_6852961_6853021 chrX_6852969_6853021 chrX_6853022_6853121;chrX_6852861_6852960 100.00 100.00 100.00 100.00 NA 95.45 97.83 100.00 98.39 NA NA 97.56 100.00 100.00 100.00 97.73 NA 96.43 93.10 100.00 95.45 100.00 100.00 97.87 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.80 100.00 100.00 100.00 100.00 100.00 NA 98.36 100.00 100.00 100.00 100.00 100.00 K multi_cassette Crk,RI_chr4_231302_233315,RI_chr4_231307_231369,RI_chr4_231307_232217,I_chr4_231307_232253 chr4 + chr4_231307_233253 chr4_231307_232479;chr4_232609_232740;chr4_232881_233253 chr4_232480_232608;chr4_232741_232880 chr4_231208_231306;chr4_233254_233355 9.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA 0.00 20.00 NA NA 18.18 NA NA NA NA NA NA NA NA 9.52 K alternative_donor Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11838972_11839458;chr2R_11838972_11839411 chr2R_11838972_11839376 chr2R_11838888_11838971;chr2R_11839459_11839486 89.47 100.00 77.78 90.00 100.00 85.71 77.78 81.82 87.50 85.71 100.00 83.33 71.43 100.00 100.00 100.00 83.33 100.00 85.71 88.24 100.00 89.47 89.47 100.00 83.33 100.00 100.00 83.33 85.71 100.00 92.86 83.33 83.33 100.00 85.71 85.71 100.00 87.50 100.00 85.71 83.33 93.75 100.00 88.89 100.00 100.00 83.33 100.00 92.31 100.00 88.89 100.00 NA 80.00 84.62 100.00 NA 83.33 K intron_retention Meics chr3L - chr3L_13957114_13957218 chr3L_13957113_13957114;chr3L_13957218_13957219 chr3L_13955947_13957113;chr3L_13957219_13957397 6.67 NA NA 63.64 NA NA 6.67 5.56 6.67 NA NA 5.88 NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD None chrU + chrU_1179335_1184082 chrU_1183510_1184082 97.97 97.24 98.65 91.38 98.31 99.10 98.26 95.48 97.47 98.00 97.47 98.33 97.16 97.29 97.97 98.92 98.78 97.39 97.66 97.99 98.88 95.59 96.91 97.78 98.80 99.04 99.57 95.00 99.27 98.57 88.54 98.46 100.00 98.25 98.83 98.63 97.31 99.04 98.26 98.77 96.15 98.05 97.31 99.31 94.74 97.61 97.35 95.24 98.74 95.73 97.94 98.40 97.77 98.27 97.19 96.39 93.22 97.00 K intron_retention spi,I_chr2L_19569183_19577185,I_chr2L_19569227_19572142,I_chr2L_19569227_19577173,mir-2a-2,mir-2a-1,mir-2b-2 chr2L - chr2L_19569227_19577185 chr2L_19569226_19569227;chr2L_19577185_19577186 chr2L_19569127_19569226;chr2L_19577186_19577273 20.00 25.00 20.00 6.40 18.18 25.00 12.31 19.05 23.44 NA 20.00 17.00 14.29 29.41 18.92 24.00 18.92 19.05 32.50 22.89 11.76 13.64 39.58 27.03 9.76 13.89 13.73 2.78 4.84 23.08 24.56 18.52 30.77 18.18 26.09 15.22 22.73 36.84 24.14 23.36 12.50 22.58 15.62 19.51 17.24 28.89 18.31 37.04 21.05 28.26 22.00 16.22 28.57 31.43 18.75 29.73 19.05 33.33 K intron_retention Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11835112_11835509 chr2R_11835111_11835112;chr2R_11835509_11835510 chr2R_11834432_11835111;chr2R_11835510_11836215 1.22 0.00 2.78 2.73 2.67 5.56 0.00 4.05 2.34 0.00 0.00 3.10 5.13 3.77 2.60 1.67 3.39 3.33 0.00 2.96 0.00 1.22 0.00 2.22 0.00 1.56 3.33 3.39 0.00 0.98 0.00 0.00 0.00 0.00 1.16 0.00 2.09 2.36 1.35 1.22 0.00 1.32 0.00 0.00 0.00 1.77 0.00 0.00 1.71 0.00 1.64 2.47 0.00 0.00 0.00 1.42 0.00 0.00 K intron_retention CG7110,E_chr2L_13399145_13399217,CR_chr2L_13405706_13410507 chr2L + chr2L_13399141_13399217 chr2L_13399140_13399141;chr2L_13399217_13399218 chr2L_13399135_13399140;chr2L_13399218_13399317 0.00 0.00 0.00 2.56 NA 0.00 3.57 0.00 0.00 NA NA 0.00 0.00 0.00 8.33 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 NA 0.00 NA 0.00 NA NA 2.27 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 7.14 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention CG5514,RI_chr3R_23768206_23768306,Gp93 chr3R + chr3R_23768206_23768306 chr3R_23768205_23768206;chr3R_23768306_23768307 chr3R_23768160_23768205;chr3R_23768307_23768406 100.00 NA NA 100.00 100.00 NA NA 88.89 100.00 NA NA 93.33 NA 100.00 100.00 NA NA NA NA 92.31 NA 100.00 NA 90.00 NA 90.91 100.00 93.75 91.67 88.89 90.91 100.00 100.00 100.00 92.31 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 NA NA 92.86 100.00 100.00 100.00 NA K intron_retention lgs,RI_chr4_463390_463489 chr4 - chr4_458188_458280 chr4_458187_458188;chr4_458280_458281 chr4_457800_458187;chr4_458281_458668 97.44 97.22 93.75 96.20 96.55 96.67 98.41 94.29 98.92 100.00 100.00 100.00 97.78 96.30 97.30 98.15 97.06 96.97 97.37 96.15 100.00 97.78 98.11 96.67 96.67 97.44 97.78 92.11 97.22 95.24 97.37 97.83 97.10 97.01 100.00 100.00 96.88 96.88 95.12 95.00 97.67 97.53 100.00 92.31 98.28 98.46 93.94 98.11 98.41 93.22 97.62 96.30 100.00 100.00 97.73 100.00 100.00 98.33 K intron_retention noncoding_19949,noncoding_19950 chr3R - chr3R_25581424_25581488 chr3R_25581423_25581424;chr3R_25581488_25581489 chr3R_25581208_25581423;chr3R_25581489_25581539 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA 17.65 NA NA NA NA 41.38 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA 11.11 14.29 NA NA NA NA 19.35 NA NA NA NA NA NA NA NA K jcn_only_AD Cdk4,RI_chr2R_12471503_12471656 chr2R + chr2R_12467202_12468346;chr2R_12467432_12468346;chr2R_12467275_12468346;chr2R_12467474_12468346;chr2R_12467225_12468346;chr2R_12467227_12468346;chr2R_12467261_12468346;chr2R_12467039_12468346 chr2R_12467241_12468346 chr2R_12468347_12468520;chr2R_12467030_12467038 0.00 0.00 0.00 0.00 NA 0.00 0.00 1.72 0.00 NA 3.33 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 4.17 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 1.69 NA 0.00 0.00 NA NA 0.00 NA 0.00 NA NA 4.76 0.00 NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K jcn_only_AD mam,I_chr2R_9898687_9913084 chr2R + chr2R_9898687_9926214 chr2R_9925929_9926214 chr2R_9926215_9927473 11.94 18.18 5.71 12.50 13.89 16.13 21.67 8.14 18.80 18.52 4.35 9.88 11.36 20.83 10.17 24.00 17.50 4.76 22.58 11.01 11.76 24.59 10.39 13.46 3.12 18.75 10.81 NA 14.81 4.76 14.29 NA 11.59 18.06 12.12 8.33 11.11 6.52 6.67 7.94 19.23 12.79 21.43 5.66 NA NA 11.11 12.28 12.37 NA 9.84 23.33 6.45 NA 16.98 8.33 NA 4.65 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2389073;chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2393243 chrX_2389074_2389271;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664 chrX_2387149_2387248;chrX_2393244_2393291 2.63 NA NA NA NA NA NA NA NA NA NA 5.26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG11474,CG2921 chr2R - chr2R_17959213_17959270 chr2R_17959212_17959213;chr2R_17959270_17959271 chr2R_17958918_17959212;chr2R_17959271_17960137 0.00 0.00 0.00 0.00 0.00 5.26 0.00 2.56 8.16 NA 0.00 0.00 0.00 0.00 7.41 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 4.76 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K jcn_only_AD l(2)gl,I_chr2L_17150_19884,I_chr2L_17208_18260,RI_chr2L_17213_18330,I_chr2L_17213_21135,RI_chr2L_20021_20830,I_chr2L_20974_21065 chr2L - chr2L_17213_18025;chr2L_17213_18330 chr2L_17213_19879 chr2L_17113_17212 95.78 100.00 100.00 100.00 90.48 95.65 95.00 97.30 97.09 NA NA 100.00 100.00 96.00 100.00 93.94 100.00 95.83 90.38 96.49 NA 95.00 94.87 96.55 NA NA 91.67 NA 93.10 94.12 100.00 NA 72.41 95.59 100.00 NA 95.65 95.45 NA 85.71 NA 98.00 95.00 97.44 NA 96.00 NA 98.28 100.00 NA 94.29 95.65 NA NA 95.74 NA NA 90.91 K intron_retention dsh chrX + chrX_11250423_11250488 chrX_11250422_11250423;chrX_11250488_11250489 chrX_11249914_11250422;chrX_11250489_11252759 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention PhKgamma,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11591278_11591343 chrX_11591277_11591278;chrX_11591343_11591344 chrX_11591099_11591277;chrX_11591344_11591628 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 4.44 0.00 2.22 0.00 0.00 0.00 0.00 2.86 7.14 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG13124,RI_chr2L_9906444_9907607,RI_chr2L_9907784_9908405,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907545_9907607 chr2L_9907548_9907607 chr2L_9907608_9907707;chr2L_9907051_9907544 34.74 39.71 36.96 37.74 26.15 32.81 31.68 33.81 35.71 28.57 35.82 35.51 41.18 34.67 40.51 37.93 31.34 36.00 33.33 37.19 31.58 39.52 32.76 32.61 27.94 35.56 32.41 42.86 40.21 35.53 35.35 38.71 33.33 39.44 30.34 34.74 36.36 29.85 38.05 37.27 28.92 34.48 25.00 35.14 37.29 36.73 32.73 32.99 39.53 37.50 34.19 30.77 33.33 30.56 38.00 32.56 25.81 31.87 K multi_cassette I_chr2L_822032_822857,dock chr2L + chr2L_826508_830737 chr2L_826508_829456;chr2L_829972_830144;chr2L_830350_830737 chr2L_829457_829971;chr2L_830145_830349 chr2L_826008_826507;chr2L_830738_830750 100.00 100.00 100.00 100.00 100.00 98.04 98.11 100.00 99.24 100.00 98.18 100.00 97.22 97.87 98.48 97.83 100.00 98.08 100.00 100.00 100.00 99.06 99.19 100.00 100.00 97.83 100.00 100.00 98.39 100.00 98.00 100.00 100.00 100.00 100.00 98.63 100.00 98.95 100.00 99.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.73 100.00 100.00 98.96 100.00 100.00 100.00 100.00 98.46 100.00 100.00 K alternative_acceptor Nhe3,I_chr2L_6680525_6680670 chr2L - chr2L_6680525_6680670 chr2L_6680543_6680670 chr2L_6680671_6680706;chr2L_6680425_6680524 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 K cassette CG4300 chr3L - chr3L_12266142_12267102 chr3L_12266142_12266597;chr3L_12266721_12267102 chr3L_12266598_12266720 chr3L_12264759_12266141;chr3L_12267103_12267211 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG17549,I_chr2L_19387937_19387993,R_chr2L_19388305_19388473,RI_chr2L_19388570_19389427,I_chr2L_19388570_19389922 chr2L - chr2L_19388314_19388473 chr2L_19388313_19388314;chr2L_19388473_19388474 chr2L_19388040_19388313;chr2L_19388474_19388568 15.38 20.00 NA 20.00 NA NA 22.22 38.46 24.14 30.00 30.77 15.38 NA NA NA NA NA NA 25.00 17.50 NA 9.38 0.00 6.25 13.33 NA 25.00 0.00 12.50 21.43 NA 15.00 8.33 NA 11.76 4.76 17.65 NA 17.65 16.67 NA 31.58 NA 13.33 0.00 11.54 10.26 14.29 24.00 8.33 21.43 NA 0.00 15.38 25.00 26.09 9.30 0.00 K jcn_only_AD CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516706_21517821;chr3L_21516330_21517821;chr3L_21516399_21517821;chr3L_21517168_21517821;chr3L_21516501_21517821;chr3L_21516918_21517821;chr3L_21516343_21517821;chr3L_21516728_21517821 chr3L_21516722_21517821 chr3L_21517822_21517920;chr3L_21516311_21516329 4.35 0.00 8.00 5.26 0.00 0.00 5.08 4.76 10.00 NA NA 2.38 NA 4.35 0.00 0.00 5.00 6.67 NA 5.00 NA 8.00 3.03 4.55 NA 0.00 4.76 NA 9.09 NA 0.00 NA 6.67 2.04 NA 15.00 3.57 8.33 NA 4.17 NA 1.69 4.35 0.00 NA 8.33 0.00 11.90 0.00 NA NA NA NA NA 3.70 NA NA 10.00 K alternative_donor drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9390195;chr2R_9389597_9389907;chr2R_9389597_9389940;chr2R_9389597_9390293;chr2R_9389597_9389751;chr2R_9389597_9390264;chr2R_9389597_9389753;chr2R_9389597_9389757 chr2R_9389597_9390151 chr2R_9389497_9389596;chr2R_9390294_9390295 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Mapmodulin,I_chr2R_13756314_13756571 chr2R - chr2R_13754759_13754830 chr2R_13754758_13754759;chr2R_13754830_13754831 chr2R_13753827_13754758;chr2R_13754831_13755064 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rpn6,I_chr2R_10639546_10639733 chr2R - chr2R_10639546_10639710 chr2R_10639545_10639546;chr2R_10639710_10639711 chr2R_10639446_10639545;chr2R_10639711_10639779 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.84 100.00 100.00 100.00 98.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.00 100.00 100.00 100.00 100.00 100.00 98.94 100.00 100.00 99.07 100.00 100.00 98.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.44 100.00 100.00 K intron_retention CG3984 chr3R + chr3R_10964388_10964456 chr3R_10964387_10964388;chr3R_10964456_10964457 chr3R_10963513_10964387;chr3R_10964457_10964688 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 NA 2.50 0.00 0.00 NA NA 6.25 0.00 0.00 4.35 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 7.41 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr2R_19265701_19270570,CG3530,CG3520 chr2R - chr2R_19277182_19277241 chr2R_19277181_19277182;chr2R_19277241_19277242 chr2R_19277004_19277181;chr2R_19277242_19277464 12.17 9.00 8.20 25.97 11.11 13.73 16.67 23.94 8.21 20.59 11.59 13.04 10.87 16.28 14.06 7.41 3.28 10.29 14.81 17.50 13.85 32.43 12.17 8.77 23.64 31.67 17.44 13.21 32.79 5.48 11.76 16.13 8.77 9.30 13.04 12.90 6.21 7.76 11.36 12.24 21.43 12.31 14.29 6.80 16.39 8.82 6.52 25.93 10.20 8.53 13.25 6.56 11.11 5.48 11.59 9.17 9.23 21.43 K jcn_only_AA CG4705 chr2L + chr2L_11092727_11092781 chr2L_11092727_11092771 chr2L_11092553_11092726;chr2L_11092782_11094635 0.00 4.76 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 K alternative_acceptor CG5646,I_chr3R_23386250_23386484,I_chr3R_23386287_23386484 chr3R - chr3R_23386250_23386484;chr3R_23386220_23386484;chr3R_23386237_23386484 chr3R_23386287_23386484 chr3R_23386485_23386584;chr3R_23386187_23386219 15.62 11.76 9.09 0.00 0.00 25.00 11.11 4.76 13.89 25.00 0.00 9.09 12.50 18.75 15.00 20.00 11.11 36.36 10.00 3.45 6.67 35.29 16.13 20.83 9.09 0.00 17.14 14.81 18.18 21.74 11.11 27.27 23.08 16.67 13.04 27.78 12.90 21.05 17.95 33.33 20.00 19.23 27.27 15.62 23.53 18.18 16.67 32.14 11.54 24.00 18.75 7.14 27.27 11.11 9.09 15.00 8.33 13.33 K intron_retention CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_120081_121632 chr2L_120080_120081;chr2L_121632_121633 chr2L_119981_120080;chr2L_121633_121729 62.59 NA NA 61.54 NA NA 69.23 65.00 77.78 NA NA 63.64 78.57 NA NA 70.00 NA NA NA 61.54 NA NA 50.00 50.00 NA NA 66.67 30.77 NA 35.71 NA NA NA 70.00 NA 54.55 77.78 NA NA 44.44 NA 75.00 NA 45.45 NA 41.67 NA 41.67 69.23 77.78 57.14 NA NA NA NA 70.00 NA 29.41 K intron_retention CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,RI_chr2L_126228_126309 chr2L - chr2L_117760_117819 chr2L_117759_117760;chr2L_117819_117820 chr2L_117691_117759;chr2L_117820_117887 1.57 0.00 3.39 4.48 2.34 0.00 2.31 1.69 2.75 0.00 0.00 1.99 0.00 4.00 1.59 2.45 2.05 0.00 2.26 2.25 0.00 1.97 1.72 0.40 0.76 5.00 2.69 3.51 3.64 1.81 0.00 0.00 5.77 1.04 2.60 1.57 0.00 0.00 0.00 1.52 0.00 2.54 0.00 1.36 0.00 2.38 0.00 7.32 4.10 0.00 1.15 0.61 0.00 0.00 2.01 0.00 0.00 1.79 K alternative_donor CG17082,I_chr2R_632143_635290,R_chr2R_642176_644740,I_chr2R_644094_644145,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_632192_632274;chr2R_632196_632274;chr2R_632085_632274;chr2R_632143_632274 chr2R_631984_632274 chr2R_632275_632399;chr2R_631970_631983 0.00 NA NA 0.00 NA NA 12.50 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA tai,I_chr2L_9191814_9206231 chr2L + chr2L_9243546_9243647 chr2L_9243546_9243611 chr2L_9243235_9243545;chr2L_9243648_9243900 96.90 95.49 95.45 98.10 95.87 96.09 96.59 98.16 97.57 98.28 93.52 95.51 95.87 97.89 99.31 99.19 96.75 97.73 100.00 97.99 96.04 99.00 96.55 97.12 96.70 98.03 95.24 92.27 97.15 96.93 96.93 95.89 97.22 97.54 97.67 98.03 97.64 96.84 96.40 94.24 96.86 98.97 98.08 97.20 96.55 96.83 96.18 96.37 96.89 96.90 96.57 94.90 97.64 96.00 97.40 99.19 98.88 94.40 K intron_retention CG15098,I_chr2R_14721883_14721980 chr2R - chr2R_14721902_14721980 chr2R_14721901_14721902;chr2R_14721980_14721981 chr2R_14721834_14721901;chr2R_14721981_14722049 0.51 0.36 0.42 0.27 0.22 0.26 0.40 0.51 0.36 0.00 0.78 0.44 0.10 0.46 0.70 0.50 0.56 0.51 0.47 0.26 0.69 1.22 0.50 0.96 0.94 0.24 2.16 4.71 1.01 0.45 0.84 0.65 0.60 0.53 0.75 0.96 0.97 0.35 0.66 0.82 0.30 0.58 0.42 0.42 0.69 0.50 0.55 1.02 0.62 0.57 0.79 0.99 0.16 0.42 0.54 0.49 0.50 0.50 K cassette CG17514 chr2RHet + chr2RHet_2776072_2814311 chr2RHet_2776072_2799749;chr2RHet_2800715_2814311 chr2RHet_2799750_2800714 chr2RHet_2775979_2776071;chr2RHet_2814312_2821170 100.00 100.00 95.00 93.44 100.00 100.00 97.10 98.36 98.67 100.00 100.00 96.00 100.00 96.77 92.86 98.78 100.00 92.31 96.00 96.77 90.00 100.00 100.00 100.00 100.00 100.00 93.33 91.67 100.00 100.00 94.12 100.00 92.86 100.00 100.00 93.33 100.00 100.00 100.00 94.74 50.00 93.02 95.24 100.00 100.00 83.33 100.00 93.75 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA bel,I_chr3R_4483665_4483736,I_chr3R_4484110_4485922 chr3R - chr3R_4483566_4483736 chr3R_4483665_4483736 chr3R_4483737_4483836;chr3R_4483565_4483565 0.00 0.00 1.72 0.73 0.00 0.00 2.94 0.61 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.32 0.28 0.32 0.95 2.08 0.00 1.37 0.46 0.51 1.56 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.38 0.82 0.60 0.57 0.57 0.43 0.80 0.00 0.00 0.00 0.00 0.00 0.55 K intron_retention CG5059,I_chr3L_20508909_20508960,I_chr3L_20509233_20511440 chr3L - chr3L_20508724_20508824 chr3L_20508723_20508724;chr3L_20508824_20508825 chr3L_20508544_20508723;chr3L_20508825_20508886 2.54 4.29 1.52 1.98 0.00 2.70 2.08 3.70 2.31 0.00 6.25 2.54 4.35 2.78 3.49 1.23 0.00 0.00 4.29 0.90 0.00 1.96 2.74 4.30 0.00 1.16 4.90 6.06 0.00 0.00 1.49 4.84 1.59 1.85 4.65 5.56 0.98 3.33 0.00 2.68 5.08 2.88 0.00 2.94 2.74 2.44 2.60 4.88 3.57 0.00 3.90 4.17 0.00 6.35 2.38 1.37 1.92 4.44 K intron_retention CG10747,RI_chr2L_20090945_20090997 chr2L - chr2L_20090940_20090997 chr2L_20090939_20090940;chr2L_20090997_20090998 chr2L_20090845_20090939;chr2L_20090998_20091097 17.39 7.69 NA 20.00 NA NA 26.67 9.09 26.32 NA NA 19.05 NA NA 14.29 17.39 NA NA NA 12.50 NA NA 12.50 NA NA NA 20.00 NA NA NA 27.78 NA NA 10.00 NA NA NA NA 30.77 NA NA 13.64 7.14 NA NA NA NA NA 16.00 14.29 35.71 NA NA NA 18.75 NA 25.00 NA K intron_retention CG4699 chr3R + chr3R_11624200_11624445 chr3R_11624199_11624200;chr3R_11624445_11624446 chr3R_11623809_11624199;chr3R_11624446_11624758 51.72 40.00 50.00 73.33 70.00 72.73 61.54 68.42 58.82 33.33 69.23 66.67 46.15 64.29 71.43 70.59 NA 63.64 55.56 61.11 54.55 57.14 45.45 33.33 47.62 36.36 51.43 52.78 44.44 50.00 69.23 40.00 51.72 61.11 37.50 27.78 47.22 30.43 35.48 56.41 50.00 51.72 77.78 41.94 64.29 43.48 40.91 62.86 57.14 40.00 48.48 42.11 41.38 28.57 59.09 47.83 53.85 60.00 K intron_retention Rpb7,RI_chr3R_11050688_11050804,I_chr3R_11054902_11054955 chr3R - chr3R_11048746_11048802 chr3R_11048745_11048746;chr3R_11048802_11048803 chr3R_11048425_11048745;chr3R_11048803_11048924 0.00 0.00 0.00 0.00 5.13 0.00 0.00 2.56 1.23 0.00 0.00 2.70 0.00 0.00 4.76 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.51 3.85 14.81 0.00 0.00 0.00 3.23 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 2.22 1.96 0.00 0.00 0.00 0.00 2.94 0.00 1.72 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20345459_20345524 chr2L_20345458_20345459;chr2L_20345524_20345525 chr2L_20344655_20345458;chr2L_20345525_20345670 70.00 NA NA 66.67 NA NA 71.43 90.91 73.33 NA NA 53.85 NA NA NA NA NA NA NA 69.23 NA 47.06 NA NA NA NA NA 20.00 NA NA 88.89 NA NA 77.78 NA NA NA NA NA NA NA 53.33 NA NA NA NA NA 70.00 80.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor Irc,I_chr3R_12830023_12830084 chr3R + chr3R_12830023_12830189 chr3R_12830023_12830084 chr3R_12829926_12830022;chr3R_12830190_12830523 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.16 0.00 0.00 0.21 0.32 0.00 0.00 0.00 0.00 0.00 0.25 0.19 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.52 0.00 0.00 0.16 0.00 0.00 0.55 0.00 0.54 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.34 0.00 0.49 0.00 0.53 0.00 0.00 0.00 0.00 0.34 0.00 K intron_retention CG5273 chrX + chrX_653719_653787 chrX_653718_653719;chrX_653787_653788 chrX_653471_653718;chrX_653788_654561 27.88 15.79 22.73 72.22 NA NA 41.18 37.04 21.05 NA NA 32.14 NA 33.33 30.77 40.91 14.29 22.22 33.33 57.14 NA 12.50 21.43 17.39 50.00 36.36 60.87 NA 31.58 NA 39.13 NA NA 24.14 NA 30.77 13.89 5.56 6.25 23.08 NA 24.14 NA 12.50 NA 33.33 35.71 NA 40.00 25.00 16.00 NA NA NA 30.77 20.83 16.67 NA K intron_retention Cad87A chr3R - chr3R_7720771_7720830 chr3R_7720770_7720771;chr3R_7720830_7720831 chr3R_7720508_7720770;chr3R_7720831_7721106 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA K alternative_donor CG10188 chr2L - chr2L_19508266_19508325;chr2L_19508266_19508351 chr2L_19508266_19508416 chr2L_19507490_19508265;chr2L_19508417_19508726 0.00 0.00 11.11 0.00 14.29 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 11.11 10.00 0.00 16.67 0.00 0.00 0.00 0.00 0.00 14.29 20.00 0.00 0.00 8.33 0.00 0.00 13.04 0.00 10.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 5.26 8.33 0.00 0.00 0.00 0.00 8.33 0.00 0.00 5.56 0.00 7.14 0.00 0.00 0.00 7.69 0.00 20.00 5.00 K intron_retention CG2970,fzr2,thoc5 chr2R + chr2R_19838093_19839675 chr2R_19838092_19838093;chr2R_19839675_19839676 chr2R_19838029_19838092;chr2R_19839676_19839984 1.59 0.00 0.00 2.53 0.00 1.75 3.09 1.11 1.61 0.00 0.00 1.87 0.00 0.00 0.00 2.99 0.00 3.92 4.17 0.00 4.08 3.75 3.70 3.12 1.43 0.00 0.75 4.44 6.02 0.00 3.28 1.23 1.59 0.00 4.76 2.30 2.72 2.00 2.47 2.50 3.42 2.88 0.00 1.15 1.32 1.61 0.00 3.39 1.72 2.01 1.28 0.00 0.00 0.00 3.03 1.50 1.03 1.14 K intron_retention CG12567,I_chr2LHet_20671_20722,I_chr2LHet_21570_31874 chr2LHet - chr2LHet_20651_20722 chr2LHet_20650_20651;chr2LHet_20722_20723 chr2LHet_20571_20650;chr2LHet_20723_20822 1.05 0.00 0.00 7.01 0.00 0.00 1.74 3.35 2.93 0.74 0.00 3.83 2.15 2.17 0.80 3.51 1.05 0.87 0.69 0.31 0.00 2.37 0.00 0.00 0.00 3.12 7.34 3.54 4.68 1.42 1.40 1.02 1.03 2.00 2.15 0.74 1.68 0.00 0.92 0.50 0.94 2.25 0.00 2.94 3.08 1.93 0.00 1.28 0.80 0.00 2.80 2.11 0.80 0.00 1.32 1.96 0.00 1.68 K intron_retention CG9008 chr2L - chr2L_13774768_13774836 chr2L_13774767_13774768;chr2L_13774836_13774837 chr2L_13774382_13774767;chr2L_13774837_13775047 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA NA NA NA NA 100.00 NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 92.86 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA NA 100.00 NA NA K intron_retention ATPCL,RFI_chr2R_11883823_11884399,I_chr2R_11887476_11888411 chr2R - chr2R_11883871_11884399 chr2R_11883870_11883871;chr2R_11884399_11884400 chr2R_11883672_11883870;chr2R_11884400_11884499 1.72 0.62 1.77 2.73 1.92 1.72 3.70 1.73 0.98 0.00 2.86 1.17 2.22 1.23 0.00 2.60 3.19 1.72 2.53 1.80 1.68 1.49 1.30 2.83 1.45 1.72 1.88 4.08 2.78 1.27 2.63 1.98 0.95 2.62 1.82 2.03 1.72 1.16 1.75 1.13 1.92 1.20 0.00 1.31 1.23 0.00 1.76 1.26 0.83 1.20 1.09 1.64 0.00 0.00 1.85 2.75 1.25 2.76 K intron_retention CG3523 chr2L + chr2L_3066958_3067019 chr2L_3066957_3066958;chr2L_3067019_3067020 chr2L_3066584_3066957;chr2L_3067020_3067115 0.13 0.00 0.00 0.12 0.12 0.00 0.00 0.08 0.18 0.00 0.00 0.28 0.00 0.22 0.00 0.09 0.13 0.11 0.00 0.09 0.10 0.13 0.09 0.10 0.40 0.00 0.44 0.28 0.38 0.16 0.17 0.00 0.15 0.19 0.30 0.09 0.20 0.00 0.19 0.27 0.00 0.20 0.00 0.27 0.16 0.25 0.11 0.37 0.19 0.14 0.18 0.13 0.00 0.00 0.17 0.27 0.00 0.26 K alternative_acceptor slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,RI_chr2R_20289332_20289739,I_chr2R_20289332_20289846,I_chr2R_20289332_20290093 chr2R - chr2R_20289295_20290083 chr2R_20289332_20290083 chr2R_20290084_20290204;chr2R_20289232_20289294 95.74 95.24 95.24 97.44 92.31 90.91 80.00 100.00 98.25 87.50 89.47 97.92 96.43 100.00 90.00 97.96 100.00 95.00 100.00 97.22 95.24 94.74 96.77 95.45 92.86 96.00 95.65 93.75 100.00 95.83 96.30 NA 100.00 98.00 95.45 100.00 93.75 91.67 100.00 93.75 100.00 93.48 92.00 96.67 NA 95.45 93.75 100.00 97.87 100.00 94.59 94.44 92.31 90.91 100.00 NA 100.00 100.00 K alternative_donor faf,RI_chr3R_27603474_27603893,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27613446_27613523 chr3R_27613461_27613523 chr3R_27613524_27613919;chr3R_27612869_27613445 85.25 85.71 90.00 78.85 83.33 84.62 88.00 84.48 88.08 87.50 85.48 86.40 87.14 85.71 87.67 80.46 85.19 90.41 85.37 85.28 87.14 89.91 84.30 87.23 79.66 86.21 80.81 81.58 82.05 79.73 81.90 89.66 85.00 91.74 88.52 68.60 88.89 88.33 86.02 83.80 81.18 86.52 81.25 86.08 83.51 81.42 84.78 76.84 84.25 89.23 88.79 82.69 90.57 85.25 83.70 83.72 85.00 78.31 K intron_retention Myo61F chr3L + chr3L_1325261_1325994 chr3L_1325260_1325261;chr3L_1325994_1325995 chr3L_1325027_1325260;chr3L_1325995_1326139 39.02 NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 26.67 NA NA NA NA NA NA NA NA NA K alternative_donor Tango11,RI_chr2R_17605192_17606585,RI_chr2R_17605202_17605260 chr2R - chr2R_17605202_17606585 chr2R_17605202_17605260 chr2R_17605102_17605201;chr2R_17606586_17606685 1.52 1.20 1.67 2.47 1.72 2.00 1.32 1.37 1.40 1.45 1.52 1.52 2.44 2.38 1.59 3.64 2.78 2.00 2.17 1.26 1.20 2.00 1.60 2.33 2.33 0.00 2.11 4.27 1.15 0.91 1.82 1.41 1.06 1.20 1.92 1.47 1.16 1.27 1.65 2.48 1.54 1.63 0.00 1.08 1.06 1.28 1.20 2.56 1.63 0.95 1.32 1.92 1.19 1.32 1.30 0.98 0.89 2.50 K intron_retention CG14220 chrX - chrX_19495546_19495644 chrX_19495545_19495546;chrX_19495644_19495645 chrX_19495437_19495545;chrX_19495645_19495830 5.48 7.55 5.00 3.33 6.25 5.88 15.38 10.81 8.22 5.26 0.00 7.14 0.00 6.90 3.12 8.00 0.00 2.70 7.41 4.39 0.00 11.63 9.23 5.17 16.22 0.00 12.00 10.26 21.74 5.26 3.85 5.71 3.45 6.67 4.65 4.26 12.68 4.65 9.72 8.47 0.00 6.35 0.00 6.25 8.16 3.57 5.77 0.00 4.44 5.88 3.57 7.41 0.00 5.48 2.78 7.02 3.64 2.17 K jcn_only_AD Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_150069_150180;chr4_150069_150378;chr4_150069_150353;chr4_150069_150295;chr4_150069_150205 chr4_150069_150307 chr4_149969_150068;chr4_150379_150379 7.90 NA NA 8.77 3.33 9.52 3.66 7.41 11.96 NA NA 6.25 10.00 11.11 12.50 6.67 11.63 0.00 7.41 7.41 NA NA NA NA NA 11.54 NA NA NA NA 7.69 NA NA 5.19 NA NA NA NA NA NA NA 7.02 15.00 NA NA NA NA NA 12.33 NA NA NA NA NA 8.11 NA NA NA K cassette CG14741 chr3R - chr3R_7899339_7900895 chr3R_7899339_7900180;chr3R_7900616_7900895 chr3R_7900181_7900615 chr3R_7899048_7899338;chr3R_7900896_7901144 36.27 37.33 38.24 40.93 17.78 23.35 36.28 40.75 34.68 24.46 21.20 41.72 6.16 32.68 33.90 59.72 42.73 35.46 30.77 31.31 40.93 35.47 44.58 32.07 43.90 32.25 28.40 22.92 52.03 33.33 62.63 36.27 53.46 33.17 38.97 63.79 33.26 29.51 35.55 16.16 44.83 37.65 36.17 43.77 56.34 50.84 34.75 39.18 43.59 24.00 30.51 31.91 64.53 53.09 36.01 48.36 56.77 52.13 K jcn_only_AA cni,RI_chr2L_16309575_16309999,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16310641_16310690;chr2L_16310637_16310690 chr2L_16310624_16310690 chr2L_16310691_16310700;chr2L_16310441_16310623 76.00 65.00 76.47 74.36 81.25 76.32 87.30 77.89 78.05 NA 87.88 67.19 71.43 72.22 64.81 80.82 78.79 67.57 79.03 79.41 73.08 NA 76.19 75.68 61.54 84.09 80.00 NA NA NA 75.61 NA NA 78.82 NA NA 71.43 NA 72.22 NA NA 67.14 82.61 NA NA 80.95 80.00 NA 76.00 45.16 67.74 69.57 NA NA 74.58 73.53 81.82 NA K jcn_only_AA EDTP chr2R - chr2R_13320840_13320924;chr2R_13320861_13320924 chr2R_13320873_13320924 chr2R_13320925_13321563;chr2R_13320696_13320839 0.00 0.00 0.00 2.70 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 1.89 NA 0.00 0.00 3.70 NA NA 0.00 0.00 0.00 5.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 5.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K intron_retention fws,CG6453 chr2L - chr2L_17480920_17480983 chr2L_17480919_17480920;chr2L_17480983_17480984 chr2L_17480825_17480919;chr2L_17480984_17481046 81.82 NA 91.67 82.35 50.00 NA 78.95 66.67 75.86 NA 72.73 85.71 NA NA 88.89 94.74 NA 72.73 84.62 76.47 88.89 NA NA NA NA 90.00 NA NA 90.91 NA 87.50 NA 58.33 57.89 NA 100.00 88.89 NA NA 71.43 NA 73.68 NA NA NA NA NA 71.43 68.18 NA NA NA NA NA 81.82 NA 88.89 NA K intron_retention Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15654398_15654499 chrX_15654397_15654398;chrX_15654499_15654500 chrX_15654289_15654397;chrX_15654500_15654599 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 90.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 K intron_retention I_chr3R_16141663_16144698,CG5077,I_chr3R_16147605_16147670 chr3R + chr3R_16147359_16147423 chr3R_16147358_16147359;chr3R_16147423_16147424 chr3R_16147305_16147358;chr3R_16147424_16147435 1.63 2.02 2.46 2.19 1.60 2.22 2.70 2.01 1.55 0.00 0.85 2.08 1.78 2.38 1.22 1.08 2.78 1.78 1.85 1.55 1.63 1.68 1.37 1.33 0.41 0.90 3.45 4.38 2.42 1.49 1.20 1.05 2.48 1.77 1.86 1.25 1.97 1.49 1.71 0.95 1.05 1.64 2.40 1.08 0.00 2.07 0.00 1.12 1.96 0.65 1.68 1.28 0.78 1.19 0.52 4.64 1.75 0.90 K intron_retention Ac3,I_chr2L_21635211_21637957,I_chr2L_21643253_21646594 chr2L + chr2L_21641605_21643169 chr2L_21641604_21641605;chr2L_21643169_21643170 chr2L_21641379_21641604;chr2L_21643170_21643252 0.00 NA NA NA NA NA 30.77 NA 4.76 NA NA 12.50 NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K cassette CG4538,Surf6 chr3R - chr3R_15723368_15725335;chr3R_15723365_15725335 chr3R_15723368_15724874,chr3R_15723365_15724874;chr3R_15725050_15725335 chr3R_15724875_15725049 chr3R_15723274_15723364;chr3R_15725336_15725530 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 90.91 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor mthl3 chr2R - chr2R_13338538_13340067;chr2R_13338538_13340031;chr2R_13338538_13339957;chr2R_13338538_13340007 chr2R_13338538_13338593 chr2R_13338407_13338537;chr2R_13340068_13340078 9.09 11.11 12.50 14.29 0.00 9.09 8.00 13.79 8.11 50.00 7.69 9.09 3.57 7.14 8.33 18.18 7.69 8.33 7.14 8.33 0.00 0.00 14.29 14.29 25.00 16.67 0.00 NA 50.00 25.00 5.88 NA 16.67 12.00 14.29 33.33 0.00 0.00 NA 25.00 0.00 4.17 7.69 16.67 NA 14.29 0.00 20.00 8.33 0.00 14.29 14.29 NA NA 10.00 0.00 14.29 0.00 K alternative_donor CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27045188;chr3R_27044771_27045257;chr3R_27044771_27045132;chr3R_27044771_27045027;chr3R_27044771_27045110;chr3R_27044771_27044831;chr3R_27044771_27044990;chr3R_27044771_27044895 chr3R_27044771_27044867 chr3R_27044671_27044770;chr3R_27045258_27045273 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG15160 chr2L + chr2L_18593414_18593478 chr2L_18593413_18593414;chr2L_18593478_18593479 chr2L_18593290_18593413;chr2L_18593479_18593586 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 6.12 7.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 K alternative_acceptor Cnx99A,I_chr3R_25144335_25145173,I_chr3R_25145243_25145309,I_chr3R_25145256_25145426 chr3R - chr3R_25145243_25145309 chr3R_25145256_25145309 chr3R_25145310_25145319;chr3R_25145174_25145242 98.13 98.33 96.25 97.66 98.18 100.00 99.24 96.49 100.00 96.77 98.73 98.22 98.97 99.02 98.13 98.14 100.00 94.12 96.72 99.31 98.88 87.50 100.00 98.28 100.00 98.73 100.00 100.00 97.30 97.06 98.95 90.91 91.67 97.30 95.24 95.65 98.04 100.00 100.00 94.57 97.50 95.29 98.80 94.92 93.33 100.00 97.37 95.71 97.53 100.00 97.96 100.00 92.59 100.00 98.13 97.56 100.00 88.71 K jcn_only_AD CG1657,I_chrX_11222451_11222508 chrX + chrX_11222441_11222508 chrX_11222451_11222508 chrX_11222509_11222608;chrX_11222351_11222440 0.00 0.00 3.23 0.00 0.00 0.00 2.50 1.72 0.00 0.00 0.00 0.00 NA 0.00 7.32 0.00 6.25 0.00 0.00 1.15 0.00 0.00 2.38 5.00 0.00 0.00 0.00 6.25 0.00 0.00 11.36 0.00 2.67 3.39 0.00 0.00 0.00 3.12 3.17 1.32 0.00 1.45 0.00 4.00 0.00 4.00 NA 2.13 4.84 NA 2.27 0.00 NA NA 1.49 NA NA 3.12 K jcn_only_AD RpS15Aa chrX - chrX_13231573_13231635;chrX_13231573_13231639 chrX_13231573_13231643 chrX_13231538_13231572;chrX_13231644_13231706 31.66 NA 30.00 54.17 NA 50.00 22.22 30.00 27.78 NA 56.00 29.27 NA 30.00 43.75 41.67 NA 25.00 28.57 25.93 NA NA NA NA NA 30.00 NA NA NA NA 47.06 NA NA 45.65 NA NA NA NA NA NA NA 46.03 45.45 NA NA NA NA NA 28.12 NA NA 14.29 NA NA 35.29 NA 33.33 37.50 K intron_retention CG13902,I_chr3L_840962_841041 chr3L - chr3L_840991_841041 chr3L_840990_840991;chr3L_841041_841042 chr3L_839959_840990;chr3L_841042_841141 6.67 3.85 0.00 7.32 NA 18.75 11.54 5.77 7.02 0.00 0.00 11.11 9.09 9.09 7.41 6.67 4.35 3.85 13.64 10.00 6.67 33.33 4.17 0.00 0.00 7.41 0.00 4.76 5.88 5.88 12.50 8.82 2.63 7.69 6.25 10.00 0.00 0.00 7.41 4.44 5.26 10.00 5.00 6.67 9.09 10.00 0.00 7.84 9.09 0.00 6.90 0.00 NA NA 8.33 7.69 10.00 5.77 K alternative_acceptor Fer1HCH,I_chr3R_26212319_26213496,I_chr3R_26213132_26213185 chr3R - chr3R_26213273_26213496;chr3R_26213365_26213496 chr3R_26213325_26213496 chr3R_26213497_26213534;chr3R_26213186_26213272 50.00 45.63 47.96 39.09 55.29 51.96 60.03 50.66 52.39 44.39 52.05 46.96 66.39 54.16 47.28 55.36 50.00 44.89 48.64 45.35 50.13 48.90 45.94 50.25 56.22 51.43 52.64 55.31 56.49 49.62 49.57 58.13 41.92 45.99 54.20 35.20 45.95 40.18 46.67 60.00 62.16 45.80 50.29 44.89 52.78 56.29 45.74 63.25 41.82 43.99 56.09 45.57 43.22 46.28 51.39 40.99 51.97 57.05 K alternative_acceptor CG9425,I_chr3L_14783173_14784369 chr3L + chr3L_14783173_14784369;chr3L_14783173_14785138 chr3L_14783173_14784970 chr3L_14783073_14783172;chr3L_14785139_14785560 66.67 66.67 75.00 91.67 NA 60.00 76.92 87.50 70.59 NA 75.00 83.33 80.00 75.00 100.00 47.06 66.67 NA 90.00 50.00 NA 44.44 57.14 80.00 NA NA 60.00 50.00 40.00 66.67 50.00 NA 9.09 75.00 33.33 83.33 50.00 NA NA 44.44 NA 66.67 60.00 80.00 NA NA NA 66.67 72.73 NA 66.67 33.33 NA NA 80.00 NA NA 60.00 K jcn_only_AA Gs1l,I_chr2L_4456517_4456723,I_chr2L_4458058_4458120 chr2L - chr2L_4456517_4456723 chr2L_4456521_4456723 chr2L_4456724_4456810;chr2L_4456417_4456516 96.44 NA NA NA NA NA 97.37 97.06 98.15 NA 100.00 93.94 100.00 NA 92.00 NA 95.00 NA 95.83 95.24 100.00 NA NA NA NA NA NA NA NA NA 97.50 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA 80.00 90.00 NA NA 92.59 NA NA NA NA NA 95.65 NA NA NA K intron_retention Myd88 chr2R - chr2R_5192666_5192738 chr2R_5192665_5192666;chr2R_5192738_5192739 chr2R_5192479_5192665;chr2R_5192739_5192907 0.00 0.00 3.17 0.00 0.00 0.00 0.00 0.00 1.57 0.00 2.00 1.23 2.78 0.00 0.00 0.00 0.00 3.85 0.00 3.39 0.00 1.11 2.08 0.00 0.00 0.00 5.80 4.44 7.14 0.00 2.94 0.00 0.00 1.32 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.99 0.00 0.00 1.69 2.35 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 K jcn_only_AD par-1,I_chr2R_15359242_15360944,I_chr2R_15359251_15360944,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15360670_15360944 chr2R_15360685_15360944 chr2R_15360945_15360953;chr2R_15360501_15360669 26.92 27.63 25.56 26.72 32.12 22.79 24.68 19.65 26.32 27.43 28.68 27.23 28.74 25.81 20.00 27.59 30.22 26.90 26.92 20.89 26.47 23.00 28.79 27.64 31.65 24.24 25.26 30.43 26.35 24.72 31.02 25.25 21.63 27.37 27.84 22.77 30.73 27.25 27.21 27.27 24.55 25.88 28.72 34.84 16.56 28.76 27.22 17.37 23.87 26.80 25.67 25.38 23.70 27.11 32.57 28.69 31.58 28.14 K intron_retention CG14221,CG14222,e(y)3 chrX - chrX_19513959_19514026 chrX_19513958_19513959;chrX_19514026_19514027 chrX_19513608_19513958;chrX_19514027_19514666 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG11399,I_chr3L_20775431_20775486 chr3L - chr3L_20775431_20775490 chr3L_20775431_20775486 chr3L_20775331_20775430;chr3L_20775491_20775586 0.00 4.17 3.23 0.00 NA NA 0.00 2.78 0.00 7.14 0.00 2.94 0.00 0.00 3.85 0.00 NA 0.00 NA 2.88 0.00 0.00 1.96 1.69 1.64 NA 4.00 3.45 0.00 5.41 NA NA 0.00 3.92 0.00 0.00 1.28 0.00 0.00 0.00 0.00 4.92 6.45 0.00 0.00 0.00 0.00 0.00 2.60 5.00 1.79 0.00 0.00 2.70 0.00 0.00 3.33 2.70 K jcn_only_AD CG8405,I_chr2R_11936911_11936991 chr2R + chr2R_11936911_11936991 chr2R_11936915_11936991 chr2R_11936992_11937091;chr2R_11936848_11936910 98.65 96.15 100.00 97.32 98.00 98.00 97.37 100.00 99.10 96.00 98.41 100.00 100.00 100.00 98.39 100.00 100.00 96.72 100.00 98.84 100.00 97.94 98.82 98.39 98.00 95.45 100.00 97.92 98.46 100.00 90.91 100.00 100.00 100.00 97.14 100.00 99.17 96.49 100.00 97.35 97.83 99.17 97.78 100.00 100.00 100.00 97.83 98.15 99.08 98.08 98.65 100.00 94.74 100.00 96.34 98.04 98.04 100.00 K jcn_only_AA PP2A-B' chr3R + chr3R_13995821_13997250 chr3R_13995821_13996995 chr3R_13995379_13995820 0.41 0.00 0.00 0.00 0.00 0.83 0.83 1.65 0.00 1.39 1.20 0.00 1.47 0.00 0.00 0.00 1.52 1.12 1.52 0.00 1.39 0.00 0.41 1.04 0.00 0.00 0.61 2.15 2.08 0.00 0.00 0.00 0.44 0.62 0.00 0.00 0.00 0.86 0.77 0.90 0.00 0.00 0.00 0.53 1.30 0.62 1.14 0.48 0.47 0.00 0.53 0.85 0.85 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor cryptocephal,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21312209_21318320 chr2L_21312209_21318126 chr2L_21312125_21312208;chr2L_21318321_21318416 100.00 100.00 100.00 99.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.86 100.00 99.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Mgat2,I_chr3R_25845406_25845472,I_chr3R_25845406_25846373 chr3R - chr3R_25845406_25845472;chr3R_25845406_25847371;chr3R_25845406_25847670 chr3R_25845406_25846373 chr3R_25845317_25845405;chr3R_25847671_25847898 0.00 0.00 0.00 0.00 NA NA NA NA 0.00 NA NA 4.00 NA NA NA 4.55 NA NA NA 2.44 NA 0.00 0.00 0.00 NA NA 4.76 NA 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 3.57 NA 0.00 3.23 0.00 0.00 NA 3.23 NA 0.00 NA NA 0.00 NA NA K alternative_donor Mnf,RI_chr3L_11108913_11109028 chr3L - chr3L_11111166_11112264;chr3L_11111166_11113381 chr3L_11111166_11113709 chr3L_11110405_11111165;chr3L_11113710_11113829 96.15 100.00 96.77 95.83 93.75 94.74 97.62 96.30 93.02 100.00 95.45 96.49 96.67 96.15 97.06 96.55 95.24 94.44 96.88 95.24 95.24 96.55 96.00 96.00 96.00 95.45 95.65 88.89 88.89 92.31 96.43 100.00 92.31 98.04 100.00 96.77 93.33 100.00 96.30 96.77 92.86 95.56 97.06 100.00 94.12 94.74 100.00 95.65 96.67 96.15 96.77 90.00 100.00 93.75 96.67 95.65 100.00 96.15 K mutually_exclusive spz chr3R - chr3R_22892388_22892450,chr3R_22892607_22894865;chr3R_22892388_22893079,chr3R_22893218_22894865 chr3R_22892388_22892843,chr3R_22892922_22894865 chr3R_22892451_22892606;chr3R_22893080_22893217 chr3R_22892844_22892921 chr3R_22892330_22892387;chr3R_22894866_22895053 50.35 47.14 63.46 61.74 47.17 57.38 27.14 64.96 51.50 35.29 62.50 46.43 68.85 51.92 43.02 61.33 63.83 63.83 49.41 69.57 62.75 35.09 44.74 50.00 43.18 44.93 58.73 54.55 25.00 46.15 57.35 50.00 52.38 56.86 48.00 64.52 43.48 33.33 41.03 38.89 51.72 50.35 49.12 25.00 35.63 51.92 52.63 44.09 54.96 52.63 57.63 48.21 39.44 46.34 52.50 48.48 55.56 59.09 K jcn_only_AD Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15755345_15755409;chrX_15754284_15755409 chrX_15754356_15755409 chrX_15755410_15755509;chrX_15754256_15754283 0.46 0.90 1.83 0.00 0.00 0.00 0.00 0.47 1.92 0.00 0.00 0.00 1.05 0.00 1.02 0.31 0.00 1.30 0.76 0.46 0.00 0.00 0.70 2.35 1.22 0.00 1.72 0.00 4.84 1.35 0.68 0.00 4.62 0.46 1.11 0.00 1.23 0.00 0.00 1.55 1.72 2.60 0.90 0.68 0.00 1.01 0.00 0.00 0.40 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.93 1.47 K jcn_only_AD CG2924,I_chrX_2163288_2163676,I_chrX_2163738_2163863,I_chrX_2163738_2164440,I_chrX_2163738_2164560,I_chrX_2168373_2168893 chrX - chrX_2163738_2164440;chrX_2163738_2164670 chrX_2163738_2164731 chrX_2163677_2163737;chrX_2164732_2164736 60.00 NA NA 55.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 68.18 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG5537,I_chr3L_5804425_5804485,E_chr3L_5804911_5804975 chr3L + chr3L_5805019_5805164 chr3L_5805018_5805019;chr3L_5805164_5805165 chr3L_5804976_5805018;chr3L_5805165_5805330 94.95 96.83 93.15 96.00 100.00 96.55 96.05 94.95 94.26 93.75 98.08 89.91 92.73 100.00 95.59 93.51 88.89 98.61 96.88 95.51 96.30 78.95 94.25 96.55 97.06 95.74 94.59 93.75 96.97 87.72 98.91 92.86 89.16 91.86 92.73 97.87 98.70 98.00 90.32 91.14 91.30 91.26 93.88 100.00 85.53 95.56 95.51 95.12 96.23 89.77 91.95 97.96 92.96 92.63 94.52 96.55 95.20 92.11 K alternative_donor rhea,I_chr3L_8563622_8564067 chr3L + chr3L_8549072_8554458 chr3L_8549082_8554458 chr3L_8554459_8554717;chr3L_8548854_8549071 2.27 0.00 3.85 2.02 0.00 0.00 1.89 2.11 2.99 0.00 0.00 2.27 5.88 4.17 3.57 1.82 2.70 3.33 2.56 2.13 0.00 2.44 1.79 3.57 2.70 2.94 0.00 0.00 0.00 3.23 2.86 NA 0.00 3.77 4.35 0.00 0.00 5.00 6.06 2.38 NA 1.45 3.33 2.70 NA 7.14 NA 0.00 1.67 NA 0.00 4.76 NA NA 2.27 NA NA 0.00 K jcn_only_AD iPLA2-VIA chr3L - chr3L_9856717_9857106;chr3L_9856717_9857292 chr3L_9856717_9856876 chr3L_9856421_9856716;chr3L_9857293_9857459 7.48 0.00 2.74 6.98 2.70 4.26 3.15 4.35 8.84 NA 13.46 8.87 2.08 6.41 5.48 11.83 5.17 2.86 3.08 5.71 13.70 12.03 8.87 9.33 14.71 11.76 11.48 9.84 12.50 8.47 8.05 3.57 11.24 7.38 12.35 2.67 8.75 7.58 9.46 3.45 5.13 8.62 3.85 6.17 21.88 10.00 12.86 4.55 6.67 14.00 12.75 7.04 2.50 10.34 7.69 6.12 3.77 7.32 N jcn_only_AD CG8229,CG33199 chr2R - chr2R_4836447_4836515;chr2R_4836447_4837350 chr2R_4836447_4838210 chr2R_4835619_4836446;chr2R_4838211_4838296 98.46 99.12 100.00 95.76 100.00 98.39 97.47 98.73 97.40 98.92 97.96 95.40 100.00 96.55 97.56 98.95 100.00 100.00 97.92 97.72 96.77 100.00 98.46 99.24 97.59 98.81 97.17 100.00 93.75 100.00 97.78 100.00 96.63 100.00 97.94 100.00 97.89 99.02 97.13 98.96 97.37 98.02 98.70 98.32 89.83 100.00 99.21 99.07 100.00 96.81 98.46 100.00 97.85 100.00 100.00 99.31 96.40 89.43 K jcn_only_AD wun2,I_chr2R_5304606_5304660 chr2R + chr2R_5305074_5305137 chr2R_5305077_5305137 chr2R_5305138_5305166;chr2R_5305008_5305073 99.07 99.61 98.99 100.00 100.00 97.28 100.00 98.98 98.92 100.00 97.67 98.51 100.00 99.43 98.95 99.21 99.07 100.00 97.83 99.45 99.41 98.95 100.00 98.56 99.26 100.00 99.49 98.47 98.81 100.00 99.69 99.24 99.28 99.58 98.82 98.59 98.39 99.51 100.00 99.48 98.56 98.86 98.50 98.26 99.31 99.79 98.96 99.02 99.03 98.04 99.44 99.50 98.11 99.00 98.30 99.66 98.29 98.21 K multi_cassette l(1)G0196,I_chrX_21900456_21903880,RI_chrX_21900456_21904036,I_chrX_21900456_21904601,noncoding_25159,I_chrX_21903160_21903227 chrX + chrX_21900456_21905204 chrX_21900456_21904030;chrX_21904142_21904471;chrX_21904706_21905204 chrX_21904031_21904141;chrX_21904472_21904705 chrX_21900356_21900455;chrX_21905205_21905576 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor rho-7,noncoding_6143 chr2R - chr2R_7874732_7874790 chr2R_7874732_7874785 chr2R_7874532_7874731;chr2R_7874791_7875003 97.06 90.48 100.00 94.12 96.30 100.00 95.00 100.00 100.00 89.47 100.00 97.37 92.86 92.86 100.00 93.33 94.12 93.33 100.00 95.35 94.44 96.43 97.37 96.88 100.00 100.00 100.00 96.88 93.33 97.37 88.89 96.97 96.88 96.15 100.00 100.00 98.18 100.00 100.00 98.25 96.88 96.97 100.00 96.30 100.00 96.49 100.00 100.00 96.67 97.06 100.00 95.00 100.00 88.89 96.15 100.00 97.06 98.31 K intron_retention Dyb,I_chr2R_8338101_8339173,I_chr2R_8348603_8351844 chr2R + chr2R_8324915_8325266 chr2R_8324914_8324915;chr2R_8325266_8325267 chr2R_8324876_8324914;chr2R_8325267_8325395 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 NA 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 97.44 92.86 100.00 91.67 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Hrb27C,I_chr2L_6924401_6924743 chr2L + chr2L_6921799_6922734 chr2L_6921799_6922730 chr2L_6921730_6921798;chr2L_6922735_6922826 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA K alternative_acceptor Vha55 chr3R - chr3R_8453284_8453361 chr3R_8453298_8453361 chr3R_8453362_8453491;chr3R_8453171_8453283 93.00 93.44 92.22 92.79 93.33 90.48 86.32 91.53 89.10 98.11 92.16 93.17 93.33 93.26 92.68 95.79 92.31 95.51 94.81 92.27 96.88 95.59 92.19 92.71 95.38 95.18 95.00 90.10 94.03 98.08 95.80 88.24 88.89 89.34 94.67 92.42 91.46 91.80 87.64 89.80 96.83 91.41 92.86 91.51 93.65 95.76 93.75 89.09 92.31 100.00 93.00 93.94 98.28 93.65 95.10 90.53 88.14 94.44 K intron_retention Ero1L,CG18675,tipE chr3L + chr3L_4170419_4170518 chr3L_4170418_4170419;chr3L_4170518_4170519 chr3L_4170416_4170418;chr3L_4170519_4170792 96.97 96.00 96.77 97.50 94.12 95.65 97.56 97.56 97.01 95.00 96.67 94.44 95.83 100.00 96.97 94.23 88.46 84.00 96.88 95.38 95.83 97.14 97.62 95.65 100.00 88.89 96.15 100.00 100.00 100.00 94.44 100.00 100.00 97.30 94.74 100.00 96.97 100.00 100.00 97.06 100.00 93.22 90.00 100.00 84.21 100.00 100.00 93.75 96.00 100.00 97.22 94.74 95.00 100.00 100.00 96.43 96.97 96.00 K alternative_donor CG9184 chr3L - chr3L_1322703_1322757 chr3L_1322703_1322751 chr3L_1322541_1322702;chr3L_1322758_1322826 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Cdk9 chr2R - chr2R_18524379_18524446 chr2R_18524378_18524379;chr2R_18524446_18524447 chr2R_18524310_18524378;chr2R_18524447_18524537 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 5.00 NA NA 3.23 0.00 0.00 0.00 6.90 5.26 0.00 5.00 0.00 0.00 5.00 0.00 0.00 NA 0.00 8.70 0.00 NA 0.00 2.63 7.69 0.00 2.63 9.09 NA 0.00 0.00 0.00 2.13 0.00 5.41 0.00 0.00 0.00 4.88 8.70 0.00 2.56 7.41 0.00 0.00 0.00 0.00 12.12 0.00 0.00 5.56 K intron_retention CG16974,I_chr2L_13189619_13191526 chr2L - chr2L_13187326_13187572 chr2L_13187325_13187326;chr2L_13187572_13187573 chr2L_13187033_13187325;chr2L_13187573_13189618 0.00 0.00 0.00 0.84 0.00 1.96 0.00 0.00 1.33 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 2.15 2.00 1.53 0.00 0.70 0.00 0.76 0.00 0.00 0.00 0.00 2.15 0.41 0.76 0.62 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 K intron_retention I_chr3R_17177101_17200781,mod(mdg4),RI_chr3R_17178359_17178534,RI_chr3R_17178960_17179018,I_chr3R_17180812_17181479,RI_chr3R_17181280_17181474,I_chr3R_17181974_17182126,RI_chr3R_17182422_17182532,RI_chr3R_17183087_17183245,RI_chr3R_17183087_17183726,I_chr3R_17183481_17200781,I_chr3R_17183927_17184513,I_chr3R_17183927_17185306,RI_chr3R_17184319_17184513,I_chr3R_17184319_17185084,I_chr3R_17184319_17185284,noncoding_18168,RI_chr3R_17184792_17185306,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,RI_chr3R_17189607_17189988,I_chr3R_17190098_17190207,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17178359_17178534 chr3R_17178358_17178359;chr3R_17178534_17178535 chr3R_17178259_17178358;chr3R_17178535_17178634 25.00 NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.53 K jcn_only_AD sgg,I_chrX_2528059_2528637,I_chrX_2528131_2535622,RI_chrX_2528212_2535830,I_chrX_2528367_2535622,I_chrX_2528472_2535622,I_chrX_2529065_2563945,I_chrX_2536127_2563666,I_chrX_2563342_2563666,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2528288_2535622;chrX_2528212_2535622 chrX_2528059_2535622 chrX_2535623_2535722;chrX_2528052_2528058 60.42 63.64 58.70 60.34 NA 61.90 55.77 68.18 63.64 NA 39.29 57.50 78.12 53.33 61.76 65.62 41.67 38.46 60.42 64.41 NA NA 65.62 52.00 NA 53.33 52.00 NA NA NA 56.52 NA NA 62.71 NA NA NA 50.00 NA 58.33 NA 53.85 73.53 56.52 NA NA 65.00 NA 66.67 NA 68.18 76.19 NA NA 62.50 NA NA NA N jcn_only_AD RpL6 chr3R - chr3R_27421324_27421769;chr3R_27421324_27421398 chr3R_27421324_27421603 chr3R_27421243_27421323;chr3R_27421770_27422070 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14299 chr3R - chr3R_14577242_14577299 chr3R_14577241_14577242;chr3R_14577299_14577300 chr3R_14576666_14577241;chr3R_14577300_14577620 0.00 0.00 0.00 8.82 0.00 0.00 1.59 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 2.70 0.00 0.00 0.00 0.00 2.82 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive babo chr2R + chr2R_4842357_4843217,chr2R_4843364_4846611;chr2R_4842357_4844533,chr2R_4844662_4846611 chr2R_4842357_4842463,chr2R_4842673_4846611 chr2R_4843218_4843363;chr2R_4844534_4844661 chr2R_4842464_4842672 chr2R_4842239_4842356;chr2R_4846612_4846839 10.00 18.18 5.00 6.25 20.00 9.09 4.88 3.85 11.90 11.11 14.29 7.81 8.33 5.88 14.29 9.38 13.33 9.09 5.00 2.56 10.00 14.29 10.71 9.52 6.67 13.33 8.70 NA 20.00 14.29 8.33 0.00 9.09 12.12 14.29 12.50 13.64 11.76 9.09 4.55 NA 14.29 6.67 8.70 16.67 10.00 12.50 13.33 14.29 0.00 8.70 6.67 14.29 NA 15.79 10.00 0.00 12.50 K jcn_only_AD rho-7,noncoding_6143 chr2R - chr2R_7874732_7874790 chr2R_7874732_7874785 chr2R_7874532_7874731;chr2R_7874791_7875003 98.75 94.00 100.00 96.97 98.44 100.00 98.18 100.00 100.00 94.23 100.00 98.89 97.06 97.22 100.00 97.56 97.78 97.22 100.00 97.12 97.62 98.57 98.85 97.37 100.00 100.00 100.00 97.53 95.71 98.88 94.12 98.75 97.40 96.72 100.00 100.00 98.60 100.00 100.00 99.34 98.73 97.40 100.00 98.53 100.00 97.78 100.00 100.00 97.14 98.81 100.00 98.15 100.00 92.86 98.44 100.00 98.77 99.32 K jcn_only_AA Cf2,I_chr2L_4882802_4882864 chr2L - chr2L_4882493_4882864;chr2L_4882366_4882864 chr2L_4882802_4882864 chr2L_4882865_4882964;chr2L_4881215_4882365 6.90 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA 6.90 NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA K intron_retention ref(2)P,EI_chr2L_19548696_19549582 chr2L + chr2L_19542989_19543619 chr2L_19542988_19542989;chr2L_19543619_19543620 chr2L_19542382_19542988;chr2L_19543620_19545101 0.00 1.52 0.00 1.82 0.00 0.00 1.49 0.00 0.40 0.00 0.00 0.00 0.00 1.11 1.50 0.73 1.90 0.00 0.77 0.00 0.00 0.00 0.87 1.85 0.00 0.00 0.00 1.55 1.38 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.77 0.00 0.00 0.00 1.64 0.00 0.00 0.52 0.00 0.63 0.00 2.25 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG7843,I_chr2R_1972736_1972822 chr2R - chr2R_1971896_1972012;chr2R_1971513_1972012 chr2R_1971883_1972012 chr2R_1972013_1972292 0.63 1.52 0.00 0.00 0.00 3.28 0.91 0.71 2.01 0.00 1.85 0.84 1.32 1.59 0.00 0.00 1.33 3.33 1.16 0.00 1.82 0.00 1.19 2.38 0.00 0.00 0.00 0.00 0.00 0.00 6.02 0.00 1.37 2.46 2.90 0.00 1.61 0.00 0.00 1.87 0.00 0.63 3.39 0.00 2.94 0.00 3.57 0.00 0.00 0.00 1.20 0.00 0.00 2.56 1.10 0.00 0.00 2.74 K alternative_acceptor orb2,I_chr3L_8942860_8947477 chr3L - chr3L_8942851_8947032 chr3L_8942860_8947032 chr3L_8947033_8947269;chr3L_8942760_8942850 95.00 100.00 85.71 90.00 100.00 NA 93.33 100.00 93.33 90.91 88.89 100.00 100.00 100.00 93.33 92.31 100.00 NA 100.00 90.91 100.00 100.00 100.00 88.24 90.00 100.00 100.00 85.71 94.44 100.00 100.00 NA 100.00 93.75 91.67 92.86 96.30 92.86 90.48 92.00 90.00 90.00 NA 100.00 100.00 100.00 91.67 95.24 95.00 91.67 94.12 100.00 90.00 100.00 100.00 92.86 100.00 100.00 K alternative_donor Fs(2)Ket,I_chr2L_20734991_20735252,I_chr2L_20735091_20735305,I_chr2L_20735170_20735252,I_chr2L_20738976_20749527 chr2L + chr2L_20735170_20735252;chr2L_20734991_20735252 chr2L_20735091_20735252 chr2L_20735253_20735352;chr2L_20734943_20734990 95.99 100.00 100.00 92.50 95.83 100.00 92.59 95.52 95.06 100.00 94.74 90.91 89.66 97.06 94.29 96.15 97.06 92.59 92.50 93.75 100.00 95.65 97.06 100.00 100.00 100.00 93.33 90.91 85.71 94.12 97.06 NA 94.44 96.72 100.00 100.00 93.75 100.00 91.67 91.67 NA 97.96 96.55 95.24 NA 100.00 87.50 100.00 93.75 87.50 95.83 100.00 100.00 100.00 100.00 100.00 100.00 84.62 K jcn_only_AD CG3631 chr3R + chr3R_10705801_10705885;chr3R_10705766_10705885 chr3R_10705805_10705885 chr3R_10705886_10706516;chr3R_10705554_10705765 9.32 NA NA NA NA NA 13.64 NA 13.64 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA l(2)k01209,I_chr2R_13308079_13310771,RI_chr2R_13310877_13311160 chr2R + chr2R_13308079_13308952;chr2R_13308079_13308147;chr2R_13308079_13311160 chr2R_13308079_13308681 chr2R_13307979_13308078 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.96 2.38 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 1.54 1.75 1.47 0.00 0.00 2.38 0.00 0.00 0.00 3.33 1.47 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 K intron_retention ps,I_chr3R_5243723_5265067,I_chr3R_5243723_5270765,I_chr3R_5245770_5265067,I_chr3R_5245770_5269732,I_chr3R_5258562_5264836,I_chr3R_5262841_5265067,RI_chr3R_5262841_5266402,I_chr3R_5265428_5266402,I_chr3R_5265428_5269732,I_chr3R_5265428_5270765,CG16777,I_chr3R_5269733_5270765 chr3R + chr3R_5262841_5269732 chr3R_5262840_5262841;chr3R_5269732_5269733 chr3R_5262741_5262840;chr3R_5269733_5269798 5.88 0.00 NA 15.00 0.00 NA 36.36 5.88 6.52 0.00 NA 12.50 7.41 0.00 14.29 8.33 6.25 12.50 0.00 0.00 NA 33.33 4.17 6.45 4.76 NA 12.50 60.00 NA NA NA NA 12.50 0.00 NA NA 0.00 0.00 0.00 0.00 NA 5.71 0.00 0.00 NA NA NA NA 14.29 NA 6.67 0.00 NA NA 8.70 NA NA NA N jcn_only_AD MAPk-Ak2,RI_chrX_5655618_5656137,I_chrX_5656715_5657974 chrX - chrX_5654854_5655201 chrX_5654854_5654932 chrX_5653941_5654853;chrX_5655202_5655617 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor frtz chr2L - chr2L_1714474_1715138;chr2L_1714406_1715138 chr2L_1714427_1715138 chr2L_1715139_1715811;chr2L_1714173_1714405 0.00 7.14 10.00 15.38 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 18.18 0.00 10.00 0.00 14.29 K intron_retention Pi3K21B,I_chr2L_301774_302025,I_chr2L_301945_302025 chr2L + chr2L_299919_302025 chr2L_299918_299919;chr2L_302025_302026 chr2L_299033_299918;chr2L_302026_302125 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 6.56 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 K jcn_only_AD CG7222 chr2R + chr2R_6701240_6701535;chr2R_6700970_6701535 chr2R_6701242_6701535 chr2R_6701536_6701719;chr2R_6700958_6700969 95.71 93.33 94.67 96.99 90.00 96.08 92.38 96.55 92.59 93.55 97.50 96.85 96.55 92.54 88.89 92.45 98.21 95.31 94.51 97.18 92.45 100.00 95.35 94.03 98.18 95.06 97.06 100.00 95.12 95.83 95.71 100.00 93.33 95.24 94.12 100.00 97.22 91.84 98.41 95.95 96.88 90.77 98.36 100.00 96.77 97.44 94.92 100.00 95.21 92.98 95.65 96.23 90.91 90.62 96.15 96.15 96.92 93.65 K alternative_acceptor Ucrh,CREFI_chr3LHet_606442_607073 chr3LHet + chr3LHet_606275_606349 chr3LHet_606275_606333 chr3LHet_606198_606274;chr3LHet_606350_606441 4.65 6.38 6.76 4.85 3.51 2.74 2.35 5.42 3.72 4.55 1.61 4.42 2.97 4.76 4.12 5.14 4.76 3.08 4.69 1.98 0.00 0.00 4.76 11.11 13.04 6.06 15.38 NA 6.67 12.50 2.88 2.22 2.56 5.19 14.29 6.25 4.17 0.00 5.26 5.00 3.92 3.11 4.65 3.70 9.52 7.25 0.00 2.63 4.62 6.67 14.29 6.25 NA NA 3.88 4.65 2.17 6.12 K intron_retention Dp,I_chr2R_9111166_9112971,REI_chr2R_9113257_9113316 chr2R + chr2R_9114435_9114490 chr2R_9114434_9114435;chr2R_9114490_9114491 chr2R_9114351_9114434;chr2R_9114491_9115695 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 1.56 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG13933,I_chr3L_1773911_1773984 chr3L - chr3L_1773524_1773577 chr3L_1773527_1773577 chr3L_1773578_1773910;chr3L_1773423_1773523 100.00 100.00 100.00 100.00 90.00 92.86 100.00 92.59 100.00 100.00 NA 100.00 94.74 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 91.67 92.31 91.67 100.00 100.00 93.33 95.45 100.00 100.00 100.00 92.86 100.00 100.00 100.00 95.45 87.50 100.00 100.00 93.75 100.00 100.00 95.00 100.00 96.00 88.89 100.00 100.00 93.33 100.00 100.00 90.00 K cassette pum,I_chr3R_4898752_4906279,I_chr3R_4989351_5039481 chr3R - chr3R_4898752_4906279 chr3R_4898752_4905466;chr3R_4905684_4906279 chr3R_4905467_4905683 chr3R_4898652_4898751;chr3R_4906280_4906379 100.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.14 100.00 98.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 99.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.89 100.00 100.00 99.25 100.00 98.65 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 K cassette CG31158,I_chr3R_18427389_18429185,CG31159 chr3R + chr3R_18427389_18429185 chr3R_18427389_18428566;chr3R_18428784_18429185 chr3R_18428567_18428783 chr3R_18427289_18427388;chr3R_18429186_18429285 100.00 97.50 97.22 100.00 100.00 100.00 100.00 98.08 98.75 97.37 100.00 98.57 100.00 100.00 97.78 100.00 96.67 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 97.92 97.56 100.00 100.00 100.00 100.00 100.00 100.00 99.02 98.21 98.97 98.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Lasp,I_chr3L_16671761_16673911,R_chr3L_16672970_16673911,RI_chr3L_16674471_16704042 chr3L - chr3L_16673033_16673911;chr3L_16672574_16673911 chr3L_16672970_16673911 chr3L_16673912_16674011;chr3L_16671908_16672573 4.32 4.56 4.32 12.18 1.50 3.72 7.42 4.10 4.13 2.75 9.00 8.12 0.00 3.43 3.48 4.55 1.79 7.43 1.04 4.54 8.65 12.06 4.98 2.94 3.98 4.80 3.88 3.81 9.31 4.90 3.17 2.93 4.17 4.76 4.43 0.99 4.97 5.15 2.90 5.09 5.22 4.01 2.87 3.86 12.58 2.42 6.34 3.86 3.59 4.33 4.58 5.10 2.47 5.56 4.79 2.59 7.58 2.66 K jcn_only_AA CG6116,I_chr2L_13291292_13292541 chr2L + chr2L_13287314_13287376 chr2L_13287314_13287373 chr2L_13286871_13287313;chr2L_13287377_13288241 85.37 NA NA 85.37 68.00 88.46 93.55 84.00 86.84 NA NA 75.56 80.00 80.00 93.10 87.88 75.00 90.91 73.91 84.44 NA 92.16 87.50 85.19 73.08 91.67 73.53 97.06 82.00 92.86 NA 92.68 81.58 90.62 81.48 NA 78.95 NA 90.70 85.07 86.21 89.29 NA 86.84 86.27 88.71 90.00 79.63 85.96 85.19 81.25 85.00 NA NA 70.27 NA 85.71 82.28 K intron_retention LamC chr2R - chr2R_10459688_10459757 chr2R_10459687_10459688;chr2R_10459757_10459758 chr2R_10459103_10459687;chr2R_10459758_10460352 20.00 17.65 26.67 33.33 40.00 30.77 27.27 26.32 25.71 0.00 NA 35.00 NA 29.41 25.00 30.00 NA NA 40.00 29.63 NA 10.00 24.14 23.53 NA 33.33 13.64 15.15 4.00 11.76 NA 0.00 15.00 25.93 30.77 NA 16.28 0.00 13.33 0.00 4.17 21.88 20.00 8.57 0.00 0.00 NA 30.43 25.93 0.00 13.64 NA NA NA 47.06 0.00 0.00 17.39 K intron_retention RpL12,I_chr2R_19948517_19948655,RI_chr2R_19948517_19948677,I_chr2R_19948517_19948682 chr2R + chr2R_19948517_19948672 chr2R_19948516_19948517;chr2R_19948672_19948673 chr2R_19948417_19948516;chr2R_19948673_19948755 0.03 0.03 0.04 0.02 0.00 0.05 0.00 0.03 0.01 0.04 0.00 0.02 0.00 0.00 0.04 0.00 0.06 0.00 0.00 0.05 0.00 0.28 0.04 0.04 0.07 0.00 0.13 0.16 0.07 0.00 0.04 0.00 0.07 0.00 0.00 0.05 0.03 0.00 0.09 0.04 0.06 0.00 0.00 0.00 0.02 0.07 0.03 0.08 0.02 0.00 0.06 0.00 0.03 0.03 0.00 0.01 0.07 0.13 K alternative_acceptor E_chr2L_20647810_20648188,CG2614 chr2L + chr2L_20658156_20658223 chr2L_20658156_20658211 chr2L_20657537_20658155;chr2L_20658224_20658404 95.00 95.24 94.74 100.00 100.00 100.00 95.65 100.00 91.89 NA 92.31 96.15 92.31 100.00 100.00 96.77 90.91 88.89 100.00 97.30 90.00 95.00 100.00 95.45 92.31 87.50 96.00 92.86 91.67 100.00 83.33 90.00 90.91 94.74 94.74 100.00 92.31 100.00 90.91 95.00 90.91 94.87 100.00 95.65 100.00 95.24 100.00 93.33 92.31 95.00 86.21 91.67 100.00 95.65 95.45 94.44 96.30 93.33 K intron_retention bwa,I_chr2L_20073310_20073377 chr2L + chr2L_20069305_20069376 chr2L_20069304_20069305;chr2L_20069376_20069377 chr2L_20069053_20069304;chr2L_20069377_20069514 0.00 0.00 0.00 0.00 0.00 3.57 1.05 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31431 chr3R + chr3R_17698524_17698593 chr3R_17698523_17698524;chr3R_17698593_17698594 chr3R_17698318_17698523;chr3R_17698594_17699356 0.00 0.00 0.78 0.76 0.00 0.00 1.25 0.27 0.90 0.00 0.00 0.81 0.00 0.00 0.85 0.42 1.48 0.00 0.00 0.56 0.00 0.00 0.43 0.00 0.74 0.00 2.44 3.81 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.62 0.00 0.00 1.05 0.00 0.00 1.18 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 K intron_retention CG15695 chr3R + chr3R_16668756_16668806 chr3R_16668755_16668756;chr3R_16668806_16668807 chr3R_16667674_16668755;chr3R_16668807_16669101 18.07 14.29 NA 36.59 15.79 25.00 NA 13.33 18.75 NA 21.05 33.33 10.71 5.26 33.33 19.51 19.05 13.33 14.29 18.92 36.84 NA 14.29 3.85 NA 41.18 16.67 NA NA NA 36.36 NA NA 26.92 NA NA 10.00 NA 5.56 NA NA 25.00 NA NA NA 25.00 NA NA 20.00 NA 17.39 NA 14.29 NA 17.39 NA 0.00 NA K alternative_donor sgg,I_chrX_2528059_2528637,I_chrX_2528131_2535622,RI_chrX_2528212_2535830,I_chrX_2528367_2535622,I_chrX_2528472_2535622,I_chrX_2529065_2563945,I_chrX_2536127_2563666,I_chrX_2563342_2563666,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2528059_2535622;chrX_2528212_2535622 chrX_2528288_2535622 chrX_2535623_2535722;chrX_2528052_2528058 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 10.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA N intron_retention Fer1HCH,I_chr3R_26212319_26213496,I_chr3R_26213132_26213185 chr3R - chr3R_26211964_26212040 chr3R_26211963_26211964;chr3R_26212040_26212041 chr3R_26211898_26211963;chr3R_26212041_26212109 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention regucalcin,I_chrX_11910759_11910811 chrX + chrX_11910755_11910811 chrX_11910754_11910755;chrX_11910811_11910812 chrX_11910659_11910754;chrX_11910812_11910911 0.46 0.22 0.55 0.57 0.31 0.58 0.96 0.65 0.55 0.54 0.35 0.45 0.36 0.65 0.26 0.58 0.41 0.56 0.39 0.56 0.46 1.23 0.20 0.37 0.50 0.29 0.95 0.31 1.53 0.46 0.00 0.55 0.55 0.75 0.90 1.12 0.34 0.00 0.79 0.53 0.24 0.48 0.22 0.12 0.00 0.72 0.00 0.30 0.44 0.69 0.50 0.19 0.41 0.23 0.54 0.61 0.14 0.30 K jcn_only_AA CG7158 chr3L - chr3L_21668049_21668121;chr3L_21668063_21668121 chr3L_21668076_21668121 chr3L_21668122_21668273;chr3L_21667494_21668048 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 1.47 NA 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 3.77 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD PMCA,I_chr4_371836_372509,I_chr4_374602_374976,RI_chr4_376108_379129,I_chr4_376108_379459,I_chr4_376108_379519 chr4 - chr4_376108_379257 chr4_376108_379175 chr4_376008_376107;chr4_379258_379263 94.03 97.56 90.79 86.05 85.42 82.00 99.09 89.32 88.69 98.31 95.35 87.79 94.03 98.41 91.67 95.49 81.16 82.00 82.54 93.29 86.05 92.75 100.00 100.00 100.00 91.84 100.00 96.67 95.65 95.65 88.79 86.36 80.43 86.47 97.56 98.31 98.11 100.00 100.00 94.37 NA 87.30 93.18 97.85 NA 97.73 96.43 90.38 88.33 NA 100.00 98.70 NA NA 80.52 NA 100.00 89.29 K alternative_acceptor CG13902,I_chr3L_840962_841041 chr3L - chr3L_840962_841041;chr3L_840970_841041 chr3L_840991_841041 chr3L_841042_841141;chr3L_840862_840961 87.50 90.91 77.78 93.75 100.00 85.71 91.67 88.89 91.67 87.50 90.00 93.33 83.33 91.67 86.67 91.67 100.00 84.62 100.00 90.62 76.92 63.64 92.86 88.89 87.50 92.31 100.00 87.50 86.67 87.50 76.47 81.25 89.47 94.12 100.00 76.92 73.33 81.82 87.50 84.21 93.33 90.00 81.82 84.62 76.92 84.21 90.00 89.47 83.33 80.00 80.00 90.91 72.73 53.85 88.24 92.86 83.33 89.47 K jcn_only_AD Aats-val chr2R + chr2R_9086425_9086478;chr2R_9086421_9086478 chr2R_9086429_9086478 chr2R_9086479_9086689;chr2R_9086375_9086420 0.00 NA 0.00 0.00 NA NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K jcn_only_AD Incenp,I_chr2R_3167836_3167975 chr2R + chr2R_3167832_3167975 chr2R_3167836_3167975 chr2R_3167976_3168075;chr2R_3167736_3167831 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.51 0.00 0.00 1.25 0.00 0.00 0.00 6.35 0.76 0.00 0.00 0.00 0.00 0.00 1.28 0.76 0.00 0.00 0.00 0.68 0.00 0.97 1.03 0.00 0.74 0.61 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.97 0.43 0.89 0.00 0.00 0.00 0.00 0.62 0.44 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.88 0.00 K intron_retention CG42389,I_chr2L_16622842_16634725 chr2L + chr2L_16602086_16603823 chr2L_16602085_16602086;chr2L_16603823_16603824 chr2L_16601914_16602085;chr2L_16603824_16604125 0.00 0.00 0.00 0.00 0.00 0.00 4.49 0.83 1.60 0.00 3.85 1.85 0.00 0.00 0.00 1.69 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 1.82 1.68 3.28 1.92 0.00 0.00 0.00 0.00 0.00 0.95 1.75 0.00 0.00 1.35 0.00 0.00 0.73 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K alternative_donor RpS15Aa chrX - chrX_13231573_13231643;chrX_13231573_13231635 chrX_13231573_13231639 chrX_13231538_13231572;chrX_13231644_13231706 52.19 NA 55.56 33.33 NA 33.33 62.50 52.00 56.00 NA 26.67 52.63 NA 53.33 37.50 43.75 NA 61.54 52.38 60.00 NA NA NA NA NA 55.00 NA NA 54.55 NA 36.36 NA NA 36.00 NA NA NA NA NA NA 62.50 37.84 42.86 NA NA NA NA NA 53.12 NA NA 75.00 NA NA 47.37 NA 50.00 47.62 K intron_retention ATPCL,RFI_chr2R_11883823_11884399,I_chr2R_11887476_11888411 chr2R - chr2R_11881902_11881966 chr2R_11881901_11881902;chr2R_11881966_11881967 chr2R_11881307_11881901;chr2R_11881967_11882307 0.00 0.00 0.44 0.00 0.00 0.00 0.84 0.00 0.49 0.00 0.00 0.00 0.00 0.53 0.84 0.83 0.00 0.00 0.00 0.70 0.00 0.57 0.67 0.00 0.00 0.00 0.00 1.31 0.48 0.00 0.00 0.00 0.00 0.00 1.32 1.01 0.00 0.00 0.33 0.00 0.00 0.79 0.00 0.40 0.00 0.41 0.53 0.00 0.28 0.00 0.61 0.00 0.00 0.00 0.52 0.00 0.80 0.60 K intron_retention mrt,I_chr3R_23105765_23106979,I_chr3R_23105765_23108338 chr3R - chr3R_23105765_23106706 chr3R_23105764_23105765;chr3R_23106706_23106707 chr3R_23105665_23105764;chr3R_23106707_23107029 55.56 NA NA NA NA NA 69.23 90.00 47.62 NA NA 66.67 NA NA NA NA 66.67 NA NA 53.85 NA NA NA 45.45 NA NA NA NA NA NA 70.00 NA NA 88.89 NA NA 25.00 NA NA 30.77 NA 56.25 NA 33.33 NA NA NA NA 50.00 NA 55.56 NA NA NA NA NA NA NA N jcn_only_AD Hcf,I_chr4_391984_392875 chr4 + chr4_380985_381212;chr4_380602_381212;chr4_380911_381212;chr4_380607_381212 chr4_380646_381212 chr4_381213_381632;chr4_380600_380601 0.00 NA NA 0.00 NA NA 0.00 0.00 1.96 NA NA 0.00 NA 0.00 NA 2.04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 3.03 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.33 NA NA NA NA NA NA NA NA NA K jcn_only_AD LamC chr2R - chr2R_10458817_10458964 chr2R_10458817_10458881 chr2R_10458387_10458816;chr2R_10458965_10459687 7.08 0.00 NA 8.33 NA NA NA NA 13.33 10.00 NA 15.00 NA NA NA NA NA NA NA 13.64 NA 12.50 2.94 11.54 5.00 NA 4.55 4.65 15.38 6.67 NA NA 10.00 4.76 9.09 NA 7.02 11.11 3.57 8.16 0.00 5.88 NA 11.76 2.44 4.76 7.14 10.34 4.55 3.60 10.64 9.52 NA 5.71 NA 5.56 6.06 9.52 K intron_retention beta-Spec chrX + chrX_17561772_17562308 chrX_17561771_17561772;chrX_17562308_17562309 chrX_17561603_17561771;chrX_17562309_17562415 0.00 0.00 0.87 0.00 0.00 0.00 1.00 0.70 1.54 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 3.45 0.52 0.45 0.00 0.00 0.00 3.03 1.55 0.81 0.00 0.00 0.00 1.26 0.00 0.63 0.44 0.00 0.44 1.60 0.00 0.41 0.00 0.68 0.00 0.40 0.00 1.00 0.00 1.27 0.00 0.00 0.00 0.58 0.00 0.00 0.00 1.88 K intron_retention cic chr3R + chr3R_16125516_16125689 chr3R_16125515_16125516;chr3R_16125689_16125690 chr3R_16125423_16125515;chr3R_16125690_16125874 31.71 34.48 42.86 27.84 43.59 36.67 50.00 34.55 39.71 NA 41.67 38.71 32.00 33.33 30.95 31.25 36.11 41.86 43.33 43.42 46.15 31.43 26.32 25.93 NA 73.68 16.33 11.90 25.93 23.81 37.14 54.55 25.00 41.18 25.00 56.25 23.08 19.05 25.93 16.22 NA 45.00 33.33 26.09 23.81 19.05 28.57 50.00 41.79 19.05 20.00 22.73 17.39 35.71 31.43 18.18 23.53 36.84 K alternative_donor RhoGAP15B chrX + chrX_16843485_16845017 chrX_16843611_16845017 chrX_16845018_16847301;chrX_16842887_16843484 12.20 8.77 12.77 22.64 12.07 13.73 15.71 8.05 13.60 12.20 22.50 18.29 6.12 16.33 11.76 14.67 4.88 9.76 13.85 16.04 17.50 73.91 13.00 10.42 12.50 20.00 10.42 6.25 37.04 18.87 10.42 11.54 12.07 14.29 15.09 7.55 11.43 9.09 14.00 12.37 26.09 11.11 10.00 14.29 9.09 11.36 12.50 28.57 11.96 17.65 10.00 15.56 12.12 10.53 10.34 7.55 9.80 10.00 K intron_retention CG2076 chrX + chrX_10985011_10985083 chrX_10985010_10985011;chrX_10985083_10985084 chrX_10984899_10985010;chrX_10985084_10985225 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14235,noncoding_24847,CG18809 chrX - chrX_19636939_19637476 chrX_19636938_19636939;chrX_19637476_19637477 chrX_19635813_19636938;chrX_19637477_19637545 40.00 NA NA 43.75 NA NA NA 35.71 47.06 NA NA 35.00 NA NA NA NA NA NA NA 40.00 NA NA NA 30.77 NA NA NA 41.67 NA NA NA NA NA NA NA NA 33.33 NA 18.75 NA NA 60.00 NA NA NA 41.67 NA NA 46.67 NA NA NA NA NA NA NA NA 40.00 K intron_retention scaf6,EI_chr3L_17037760_17037808 chr3L - chr3L_17032731_17034793 chr3L_17032730_17032731;chr3L_17034793_17034794 chr3L_17032656_17032730;chr3L_17034794_17035140 60.00 NA NA 60.00 NA 77.78 52.63 50.00 77.78 NA NA 69.57 90.91 NA 75.00 68.75 NA NA 60.00 80.00 NA 60.00 26.67 NA NA 41.67 43.75 NA NA NA 18.92 NA NA 75.00 NA NA 72.73 NA 50.00 NA NA 47.62 77.78 NA NA NA NA NA 54.55 NA NA NA NA NA 87.50 NA NA NA K intron_retention CG9005,I_chr2R_7511406_7511468 chr2R - chr2R_7508546_7508620 chr2R_7508545_7508546;chr2R_7508620_7508621 chr2R_7507121_7508545;chr2R_7508621_7508922 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AD CG12703 chrX + chrX_19645123_19645380;chrX_19645200_19645380;chrX_19645202_19645380;chrX_19645171_19645380;chrX_19644924_19645380 chrX_19645198_19645380 chrX_19645381_19645579;chrX_19644833_19644923 0.00 1.15 1.46 0.00 1.03 1.18 0.00 1.10 0.38 0.00 0.83 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.86 1.82 1.39 0.00 0.83 1.10 0.00 0.00 0.00 1.74 0.00 1.08 0.00 0.00 0.00 0.89 0.00 0.92 2.22 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.89 0.99 0.98 1.01 K intron_retention I_chr2R_4783150_4783708,Ggamma1,noncoding_5300 chr2R + chr2R_4789028_4789832 chr2R_4789027_4789028;chr2R_4789832_4789833 chr2R_4789007_4789027;chr2R_4789833_4790635 29.63 34.44 37.86 41.80 34.91 43.10 45.00 53.12 40.94 19.83 58.47 54.57 57.78 50.00 42.23 34.80 47.67 34.69 50.62 26.50 47.01 25.82 23.56 26.24 18.23 55.24 33.89 16.67 26.99 19.87 41.92 24.50 28.57 41.90 27.82 35.90 23.78 22.93 20.43 24.54 25.29 46.28 38.66 30.06 20.79 25.64 18.15 20.87 40.87 29.63 26.11 27.12 12.02 25.40 41.21 25.50 16.19 8.49 K cassette CG17018,R_chr2L_22312023_22363414,CEI_chr2L_22325847_22356902 chr2L + chr2L_22312039_22363429 chr2L_22312039_22325761;chr2L_22325847_22363429 chr2L_22325762_22325846 chr2L_22311933_22312038;chr2L_22363430_22363514 10.48 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette sba,I_chr3R_19721149_19722571 chr3R - chr3R_19721220_19722784 chr3R_19721220_19721930;chr3R_19722331_19722784 chr3R_19721931_19722330 chr3R_19720204_19721219;chr3R_19722785_19722913 91.67 94.44 92.31 53.85 83.33 92.31 94.12 81.82 96.43 90.48 71.43 89.29 62.50 84.62 84.21 92.31 91.67 100.00 83.33 88.24 91.67 79.45 89.19 85.71 95.45 90.91 90.91 97.44 83.72 92.31 100.00 89.47 92.59 95.45 84.21 96.30 82.05 95.00 96.88 90.24 100.00 88.24 100.00 92.59 93.94 96.30 95.65 91.67 88.46 93.10 87.10 81.25 82.61 84.21 94.12 86.67 100.00 96.67 K intron_retention DppIII,CG7352 chr3R + chr3R_4171122_4171180 chr3R_4171121_4171122;chr3R_4171180_4171181 chr3R_4170815_4171121;chr3R_4171181_4173147 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Sdc,I_chr2R_17282542_17285569,RI_chr2R_17286086_17286391,I_chr2R_17286089_17286391,I_chr2R_17286819_17367595,I_chr2R_17324594_17367595 chr2R - chr2R_17282551_17285569 chr2R_17282550_17282551;chr2R_17285569_17285570 chr2R_17282383_17282550;chr2R_17285570_17285669 0.00 1.94 0.00 1.50 0.00 0.00 1.28 1.89 1.08 0.00 2.00 1.25 0.00 3.12 3.77 1.18 0.00 0.00 0.00 0.94 1.47 1.74 1.49 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.88 0.00 0.00 1.48 0.00 0.00 3.40 0.00 0.62 0.00 0.65 0.00 0.00 1.52 0.00 2.72 0.00 0.00 0.00 0.00 1.89 1.72 2.50 0.00 0.00 K alternative_acceptor Ada2b,RI_chr3R_4068335_4068401 chr3R - chr3R_4063905_4064452 chr3R_4063975_4064452 chr3R_4064453_4065328;chr3R_4063825_4063904 38.71 31.25 38.71 30.23 42.11 34.78 27.08 48.48 41.82 42.86 36.36 52.50 58.82 34.78 43.48 48.00 44.00 20.00 47.06 32.79 34.78 51.76 35.71 30.77 39.29 47.62 36.84 47.62 37.93 34.21 41.67 35.90 37.10 32.43 46.43 40.48 41.67 42.11 28.33 38.24 51.72 46.81 36.84 34.09 40.91 33.33 41.38 32.76 48.72 40.00 38.46 26.67 29.17 35.48 41.38 42.86 28.21 48.57 K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27761114_27762991,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27707594_27801169 chr3R_27707594_27757793;chr3R_27758337_27784756;chr3R_27784850_27798223;chr3R_27798276_27801169 chr3R_27757794_27758336;chr3R_27784757_27784849;chr3R_27798224_27798275 chr3R_27707494_27707593;chr3R_27801170_27801219 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 66.67 NA NA 100.00 100.00 NA NA 100.00 75.00 NA 66.67 NA 100.00 100.00 66.67 NA NA 50.00 100.00 NA NA 75.00 100.00 NA NA 100.00 NA 100.00 100.00 NA 66.67 NA 66.67 100.00 NA NA 100.00 66.67 100.00 100.00 NA 100.00 NA 66.67 NA 100.00 66.67 K intron_retention RpL5,I_chr2L_22427822_22428348,psnoRNA:RpL5-a,F_chr2L_22428392_22428525,I_chr2L_22428750_22428846 chr2L - chr2L_22427796_22428348 chr2L_22427795_22427796;chr2L_22428348_22428349 chr2L_22427722_22427795;chr2L_22428349_22428391 0.03 0.03 0.02 0.04 0.04 0.05 0.04 0.03 0.05 0.04 0.02 0.04 0.06 0.04 0.05 0.03 0.03 0.04 0.04 0.04 0.03 0.03 0.03 0.06 0.03 0.03 0.04 0.13 0.03 0.01 0.02 0.02 0.03 0.03 0.02 0.02 0.02 0.03 0.04 0.03 0.03 0.04 0.02 0.04 0.01 0.03 0.03 0.02 0.08 0.03 0.04 0.03 0.02 0.00 0.06 0.03 0.02 0.03 K intron_retention CG3632,RI_chrX_16195880_16196242 chrX + chrX_16191818_16191881 chrX_16191817_16191818;chrX_16191881_16191882 chrX_16191694_16191817;chrX_16191882_16192873 0.00 0.00 0.00 0.00 0.00 0.00 9.68 0.00 3.85 NA 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 8.33 0.00 0.00 0.00 2.94 0.00 NA 14.29 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 2.27 NA 3.57 0.00 0.00 23.08 0.00 NA 8.70 5.77 NA 0.00 4.35 NA NA 7.69 0.00 NA 0.00 K jcn_only_AA rok,RI_chrX_16526333_16526477 chrX - chrX_16521501_16521628 chrX_16521528_16521628 chrX_16521629_16521903;chrX_16521334_16521500 47.06 46.08 56.34 36.00 46.25 47.06 68.18 55.65 49.70 42.71 48.89 45.58 54.84 53.23 46.15 48.00 57.14 50.91 47.17 43.06 52.38 57.83 23.15 38.10 53.61 48.48 27.59 44.26 50.67 34.07 51.39 43.18 39.53 51.18 57.89 76.34 35.27 37.68 48.66 47.33 44.44 49.34 50.00 41.88 37.25 46.75 35.11 50.00 51.39 36.36 45.39 44.12 47.06 36.76 54.55 34.88 32.26 45.95 K alternative_donor CG2003 chr3R + chr3R_27812832_27814973;chr3R_27812850_27814973 chr3R_27812907_27814973 chr3R_27814974_27815051;chr3R_27812763_27812831 2.13 4.55 3.85 6.25 0.00 4.17 2.38 1.85 2.82 0.00 4.76 4.35 2.50 6.67 7.41 5.36 0.00 0.00 3.33 2.50 6.67 0.00 5.88 0.00 0.00 4.76 4.76 NA 0.00 0.00 0.00 0.00 0.00 1.89 4.55 6.25 0.00 0.00 0.00 3.85 3.70 1.82 8.33 0.00 0.00 2.78 0.00 2.78 2.78 6.25 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG10283,I_chr2L_18473497_18474076 chr2L - chr2L_18473497_18474118 chr2L_18473497_18474076 chr2L_18473459_18473496;chr2L_18474119_18474176 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA NA K intron_retention cyc,RI_chr3L_19810268_19810326 chr3L - chr3L_19807351_19807406 chr3L_19807350_19807351;chr3L_19807406_19807407 chr3L_19806916_19807350;chr3L_19807407_19807836 0.00 0.00 0.00 3.85 0.00 NA 0.00 0.00 2.27 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 5.26 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA 5.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Adar,RI_chrX_1668256_1669638,RI_chrX_1668256_1669682,I_chrX_1668256_1682696,I_chrX_1674594_1674717 chrX + chrX_1668256_1672644 chrX_1668255_1668256;chrX_1672644_1672645 chrX_1668156_1668255;chrX_1672645_1672732 50.00 43.75 65.00 52.17 26.67 57.14 62.50 37.50 45.83 NA 58.82 50.00 42.11 42.11 63.16 41.18 64.29 35.29 42.31 56.52 61.11 NA 45.45 53.85 50.00 69.23 55.00 77.78 NA 36.36 50.00 NA NA 64.52 NA 46.15 NA 35.71 NA 39.13 NA 45.45 40.00 28.57 NA NA NA 58.82 50.00 60.00 62.50 40.00 NA NA 28.57 NA 33.33 NA K alternative_donor I_chr2R_13460029_13460240,Dcr-2,I_chr2R_13466001_13466061,I_chr2R_13466001_13466072 chr2R - chr2R_13466001_13466072;chr2R_13466001_13466061 chr2R_13466001_13466058 chr2R_13465901_13466000;chr2R_13466073_13466161 88.89 100.00 88.89 82.61 92.31 86.67 83.33 91.67 91.84 81.82 93.33 97.30 90.00 88.89 95.24 80.65 91.67 87.50 89.47 89.19 100.00 88.46 100.00 86.36 83.33 73.68 83.33 84.21 86.67 81.25 81.25 80.00 86.67 93.75 92.31 100.00 94.44 92.31 93.33 85.00 85.71 87.80 83.33 90.48 80.00 78.57 90.91 90.91 89.47 84.62 100.00 94.44 100.00 85.71 85.19 75.00 100.00 91.67 K jcn_only_AA egr,I_chr2R_5970832_5970930,I_chr2R_5970999_5971058 chr2R + chr2R_5970999_5971078 chr2R_5970999_5971058 chr2R_5970931_5970998;chr2R_5971079_5971158 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.20 0.00 0.43 0.24 0.00 0.55 0.00 0.00 0.47 0.00 0.38 0.00 0.00 0.00 0.66 0.00 0.00 0.47 0.00 0.00 0.51 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.97 0.00 0.48 0.22 0.00 0.00 0.62 0.57 0.37 0.60 0.39 0.00 0.34 0.00 0.00 0.00 0.00 0.59 0.00 0.00 K intron_retention tefu,I_chr3R_11060517_11060585 chr3R - chr3R_11064100_11064154 chr3R_11064099_11064100;chr3R_11064154_11064155 chr3R_11063979_11064099;chr3R_11064155_11064296 0.00 NA 0.00 0.00 0.00 0.00 3.57 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 5.56 NA 0.00 5.88 NA NA NA 0.00 NA 0.00 2.00 NA 0.00 NA NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention RI_chr3R_205772_205830,Cont,I_chr3R_207254_207600 chr3R + chr3R_212136_212190 chr3R_212135_212136;chr3R_212190_212191 chr3R_212002_212135;chr3R_212191_212683 0.00 0.00 0.00 9.52 7.41 0.00 6.38 0.00 0.00 NA 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 2.27 0.00 3.57 4.05 0.00 12.50 6.67 7.41 0.00 5.71 0.00 0.00 2.33 0.00 0.00 0.00 7.50 0.00 0.00 0.00 0.00 7.14 2.86 0.00 0.00 0.00 0.00 0.00 0.00 2.27 3.92 1.41 0.00 0.00 0.00 0.00 2.13 1.54 1.82 K intron_retention CG5938,EI_chr3R_23100734_23100898,RI_chr3R_23101686_23102014 chr3R + chr3R_23100734_23101112 chr3R_23100733_23100734;chr3R_23101112_23101113 chr3R_23100634_23100733;chr3R_23101113_23101275 11.48 12.82 11.90 6.56 10.34 0.00 6.06 5.41 6.94 14.29 8.33 8.00 6.06 5.71 7.69 7.14 0.00 10.42 7.32 15.28 6.67 34.09 6.49 10.42 8.33 12.07 11.48 23.26 12.77 24.14 15.38 9.68 18.92 9.86 21.21 13.89 13.64 10.71 10.00 23.08 18.52 8.86 12.50 10.81 22.22 13.21 15.91 18.92 9.46 12.82 12.50 8.00 15.62 12.00 5.36 11.54 20.00 21.88 K jcn_only_AD Flo-2 chrX + chrX_14733457_14734905 chrX_14733569_14734905 chrX_14734906_14735052;chrX_14733442_14733456 5.57 NA 0.00 11.43 NA NA NA 3.45 5.26 NA NA NA NA NA 0.00 13.04 4.76 NA NA 11.54 NA NA NA NA NA NA NA NA NA NA NA NA NA 19.35 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 5.88 NA NA NA NA NA 13.64 NA NA NA K jcn_only_AD CG11148,RI_chr4_886921_887162 chr4 - chr4_886921_887601;chr4_886921_887162;chr4_886921_887591 chr4_886921_887595 chr4_886821_886920;chr4_887602_887637 60.56 NA 65.62 50.85 74.42 79.17 57.14 54.41 62.69 NA 37.50 58.49 64.52 70.00 46.51 61.54 66.67 46.43 52.27 60.56 48.00 NA 66.67 NA 60.00 75.00 NA NA 67.74 NA 60.87 NA 68.18 52.46 NA 62.50 NA NA NA 64.58 NA 50.75 41.18 51.85 NA NA NA 55.77 65.26 NA 40.00 NA NA NA 65.85 NA NA 60.47 K jcn_only_AA E(bx),I_chr3L_240127_240176,I_chr3L_246324_246699 chr3L - chr3L_240114_240176;chr3L_240117_240176;chr3L_240127_240176 chr3L_240111_240176 chr3L_240177_240276;chr3L_240027_240110 19.33 22.06 25.74 23.08 13.56 9.43 20.13 16.06 19.33 13.89 16.67 19.75 20.55 25.37 20.83 18.00 17.50 15.38 18.82 20.81 27.78 17.14 21.05 22.37 15.38 19.05 21.57 18.75 9.00 19.44 15.62 16.36 19.64 22.83 24.62 13.27 15.15 25.00 15.79 19.03 14.75 17.39 16.67 16.28 16.67 20.83 20.00 23.02 21.13 24.49 21.05 23.53 20.69 16.95 15.62 23.33 21.15 19.26 K intron_retention Hph chr3R + chr3R_1093125_1093183 chr3R_1093124_1093125;chr3R_1093183_1093184 chr3R_1092985_1093124;chr3R_1093184_1093599 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 4.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette DCAP,E_chr2R_6159586_6174578,I_chr2R_6162362_6166803,I_chr2R_6163353_6166716,I_chr2R_6163353_6166727,I_chr2R_6164310_6172914,I_chr2R_6172307_6179999,I_chr2R_6178643_6181126,RI_chr2R_6183553_6192101,I_chr2R_6188094_6192101 chr2R + chr2R_6159586_6182116 chr2R_6159586_6181126;chr2R_6181267_6181365;chr2R_6181439_6181654;chr2R_6181688_6182116 chr2R_6181127_6181266;chr2R_6181366_6181438;chr2R_6181655_6181687 chr2R_6159486_6159585;chr2R_6182117_6182270 100.00 83.33 100.00 100.00 100.00 80.00 83.33 88.89 100.00 NA NA 100.00 80.00 100.00 66.67 100.00 100.00 87.50 75.00 100.00 100.00 100.00 100.00 87.50 100.00 NA 80.00 NA 100.00 80.00 100.00 NA 77.78 85.71 NA 100.00 87.50 100.00 88.89 85.71 NA 92.31 71.43 100.00 100.00 100.00 100.00 100.00 92.86 85.71 100.00 80.00 100.00 83.33 88.89 100.00 100.00 100.00 K intron_retention CG1161,I_chr3R_1182079_1182146 chr3R + chr3R_1181851_1181899 chr3R_1181850_1181851;chr3R_1181899_1181900 chr3R_1181725_1181850;chr3R_1181900_1181931 100.00 100.00 100.00 98.44 100.00 100.00 100.00 98.48 100.00 92.31 100.00 100.00 100.00 100.00 100.00 98.41 100.00 97.96 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 96.55 100.00 100.00 95.83 100.00 96.30 94.44 100.00 100.00 100.00 98.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 97.30 100.00 93.75 100.00 100.00 97.56 100.00 100.00 K alternative_last_exon olf186-F,CG30323 chr2R + chr2R_13738966_13746762;chr2R_13738966_13742644 chr2R_13738966_13745146 chr2R_13746763_13748712;chr2R_13742645_13743293 chr2R_13745147_13745302 chr2R_13738563_13738965 86.21 90.14 80.00 77.05 93.62 77.78 79.55 79.10 83.78 88.64 80.00 80.25 75.00 70.00 83.33 67.39 85.71 79.07 75.00 77.36 76.92 94.95 86.36 90.32 88.24 80.85 88.06 89.74 90.00 89.39 78.05 89.74 89.06 80.60 86.79 86.11 93.70 92.21 90.72 91.14 86.21 83.00 81.58 91.04 94.20 89.06 91.67 86.79 81.19 90.54 82.93 82.05 85.45 93.75 79.59 91.04 91.38 89.13 K alternative_donor Nipped-B,I_chr2R_580301_580515,I_chr2R_580453_580515,I_chr2R_580989_582555,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_580301_580367 chr2R_580301_580358 chr2R_580236_580300;chr2R_580368_580452 82.09 88.46 85.19 94.12 70.00 78.26 64.52 76.12 84.15 77.27 84.21 89.29 62.86 82.50 79.17 88.89 91.30 84.62 91.43 82.35 86.96 69.57 86.11 73.68 69.23 66.67 63.64 72.41 89.19 85.71 77.27 92.68 84.00 82.09 76.67 100.00 80.00 93.75 73.33 79.07 95.35 77.97 81.82 76.32 73.08 78.85 84.62 92.54 75.34 75.68 84.21 82.35 90.91 76.47 75.68 90.91 73.53 83.72 K alternative_acceptor CG11148,I_chr4_886499_886547,RI_chr4_886921_887162 chr4 - chr4_886478_886547 chr4_886499_886547 chr4_886548_886647;chr4_886399_886477 100.00 100.00 88.89 100.00 100.00 NA 100.00 100.00 100.00 NA NA 93.33 NA NA 100.00 NA NA 100.00 NA 100.00 NA 100.00 92.31 100.00 NA 100.00 100.00 93.33 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 85.71 NA 100.00 NA 100.00 NA 100.00 NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA N multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814894;chr2R_2815654_2816013;chr2R_2816342_2816577;chr2R_2816779_2817753 chr2R_2814895_2815653;chr2R_2816014_2816341;chr2R_2816578_2816778 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention rtGEF,snoRNA:Me28S-A3365,I_chr2L_20359856_20360012 chr2L + chr2L_20350895_20355362 chr2L_20350894_20350895;chr2L_20355362_20355363 chr2L_20350469_20350894;chr2L_20355363_20355747 0.00 0.00 0.00 2.33 0.00 0.00 0.96 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette alph,I_chr3R_25417890_25422962 chr3R + chr3R_25423196_25423885 chr3R_25423196_25423497;chr3R_25423631_25423885 chr3R_25423498_25423630 chr3R_25423141_25423195;chr3R_25423886_25424323 46.41 44.23 50.00 35.98 27.27 28.28 31.89 49.07 50.00 60.00 46.27 61.95 79.21 40.16 38.98 48.10 47.52 39.29 46.41 48.38 37.80 75.00 48.53 48.48 52.46 34.55 47.32 76.67 36.79 60.42 43.42 51.85 50.75 44.64 44.90 32.41 55.41 46.43 35.35 42.99 48.15 51.02 47.96 58.59 59.18 38.55 42.50 50.94 43.10 75.00 44.63 51.90 30.84 38.52 40.82 40.15 44.30 38.46 K intron_retention klett chrX - chrX_21499737_21501000 chrX_21499736_21499737;chrX_21501000_21501001 chrX_21499389_21499736;chrX_21501001_21501058 88.12 88.24 77.78 65.52 81.82 76.47 92.86 64.29 90.70 100.00 86.67 84.09 75.00 71.43 82.61 72.00 81.82 92.86 81.82 85.29 100.00 94.12 96.67 92.31 93.75 93.33 88.00 93.75 91.67 100.00 70.97 100.00 85.71 85.71 81.82 100.00 97.14 94.44 88.46 72.22 NA 80.00 93.33 95.65 93.75 85.00 88.89 84.62 78.95 96.00 90.48 100.00 84.21 93.33 83.33 80.95 95.00 78.57 K intron_retention CG2818 chr2L + chr2L_3714584_3714646 chr2L_3714583_3714584;chr2L_3714646_3714647 chr2L_3714575_3714583;chr2L_3714647_3716104 12.50 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG3860,RI_chr2R_19882285_19882350 chr2R - chr2R_19882430_19882563 chr2R_19882430_19882498 chr2R_19882351_19882429;chr2R_19882564_19882575 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor Mes-4,I_chr3R_23761704_23761783 chr3R - chr3R_23761704_23761783 chr3R_23761716_23761783 chr3R_23761784_23761883;chr3R_23761604_23761703 97.14 100.00 97.06 96.77 100.00 96.55 97.87 98.28 98.75 94.74 90.91 98.36 96.67 93.33 100.00 95.45 100.00 100.00 97.30 96.05 96.43 100.00 100.00 97.37 95.83 96.88 100.00 100.00 100.00 96.30 97.14 95.45 100.00 98.08 96.67 96.30 97.62 96.30 97.30 96.77 95.45 98.33 96.30 95.65 96.15 100.00 96.30 97.83 100.00 96.00 100.00 96.97 94.44 100.00 95.24 100.00 100.00 95.24 K alternative_acceptor CG2247 chrX - chrX_11502530_11502585 chrX_11502533_11502585 chrX_11502586_11502673;chrX_11502267_11502529 82.35 87.50 100.00 75.00 88.89 NA 91.67 90.91 80.77 NA NA 78.57 75.00 72.73 90.00 82.35 100.00 87.50 73.33 93.33 NA 71.43 93.33 69.23 NA 81.82 90.91 NA NA 78.57 92.31 85.71 82.14 88.89 88.89 NA 75.00 NA 81.82 85.71 NA 80.00 80.00 88.89 87.50 81.82 NA NA 72.22 75.00 76.47 88.89 NA NA 66.67 88.89 88.89 75.00 K intron_retention CG7375 chr3L - chr3L_8190803_8190878 chr3L_8190802_8190803;chr3L_8190878_8190879 chr3L_8190622_8190802;chr3L_8190879_8190964 0.00 0.00 0.00 5.38 0.00 0.00 2.50 0.00 2.00 0.00 0.00 4.23 0.00 0.00 1.64 0.00 2.27 0.00 0.00 4.35 0.00 0.00 1.20 0.00 4.65 3.77 5.26 5.00 30.95 0.00 1.72 0.00 0.00 1.43 3.23 0.00 1.82 0.00 0.00 1.67 8.89 0.00 0.00 1.67 0.00 0.00 0.00 2.94 2.11 3.61 0.00 2.78 2.38 0.00 0.00 0.00 1.59 1.47 K alternative_donor mam,I_chr2R_9898687_9913084 chr2R + chr2R_9878843_9879482 chr2R_9878998_9879482 chr2R_9879483_9879609;chr2R_9878727_9878842 96.97 92.86 100.00 95.45 100.00 100.00 90.00 97.62 97.83 100.00 100.00 96.97 96.00 100.00 100.00 98.00 100.00 94.12 96.15 100.00 91.67 NA 100.00 100.00 100.00 88.89 90.00 NA NA 100.00 100.00 NA 100.00 94.23 92.86 91.67 100.00 100.00 87.50 92.86 NA 85.37 94.44 100.00 NA 100.00 90.91 91.67 94.44 100.00 93.33 100.00 88.89 88.89 100.00 91.67 90.91 88.89 K intron_retention prel chr2R + chr2R_5311966_5312043 chr2R_5311965_5311966;chr2R_5312043_5312044 chr2R_5311837_5311965;chr2R_5312044_5312420 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 5.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor gw,RI_chr4_679135_679703,I_chr4_679135_680299,RI_chr4_679135_680693,I_chr4_679135_681047,I_chr4_679135_681671 chr4 - chr4_679135_681128;chr4_679135_681054 chr4_679135_681206 chr4_679035_679134;chr4_681207_681208 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 K intron_retention nimB1 chr2L + chr2L_13964739_13964796 chr2L_13964738_13964739;chr2L_13964796_13964797 chr2L_13964670_13964738;chr2L_13964797_13964865 23.81 17.50 22.22 43.48 24.32 14.29 29.73 22.97 19.59 NA 31.25 30.77 21.43 33.33 20.00 38.24 18.75 22.73 21.88 19.38 33.33 46.67 34.62 15.15 33.33 40.00 28.57 NA 41.67 18.75 25.44 17.95 25.00 28.85 26.67 33.33 11.36 25.00 18.64 23.81 24.32 20.59 31.71 8.70 20.00 23.40 6.90 24.14 24.29 29.17 21.28 20.00 11.36 28.00 24.44 17.78 12.64 10.00 K jcn_only_AA rdgA chrX + chrX_8914065_8914914 chrX_8914065_8914899 chrX_8913982_8914064;chrX_8914915_8915324 15.00 NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.64 NA 4.76 20.00 NA NA NA NA NA NA NA NA NA NA 15.00 NA NA NA NA NA NA NA N jcn_only_AA exba,RI_chr3R_1425087_1425302,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1426370_1426736;chr3R_1426031_1426736;chr3R_1423660_1426736 chr3R_1425087_1426736 chr3R_1426737_1426835 98.06 98.14 99.30 99.84 98.63 98.16 99.25 97.53 99.00 98.00 96.67 96.04 95.72 99.46 99.03 96.50 98.76 98.11 96.53 95.72 97.38 98.18 98.69 97.36 97.29 97.76 98.35 97.26 89.68 99.28 98.63 92.90 95.90 98.53 99.17 94.26 98.75 100.00 97.28 98.04 97.37 97.57 98.17 98.19 96.90 97.10 99.12 97.50 98.85 98.06 97.85 98.17 99.49 97.35 97.24 98.19 99.50 96.83 K intron_retention vap,RI_chrX_15897976_15899352,I_chrX_15897976_15899654,I_chrX_15898011_15899654,RI_chrX_15898427_15899654,RI_chrX_15899237_15899352,I_chrX_15899237_15899654 chrX - chrX_15899237_15899352 chrX_15899236_15899237;chrX_15899352_15899353 chrX_15899137_15899236;chrX_15899353_15899365 92.59 NA 90.00 93.33 NA 90.00 94.74 91.67 92.31 NA NA 100.00 NA 87.50 NA 94.74 92.86 NA 91.67 86.67 87.50 92.31 NA NA NA 100.00 NA NA 100.00 100.00 80.00 NA 97.37 93.75 NA 100.00 NA NA NA NA 88.89 86.96 90.00 NA NA NA NA 93.33 83.33 NA NA NA NA NA 93.33 NA NA 93.33 K intron_retention I_chr2L_71805_74902,galectin,I_chr2L_72082_75077,RI_chr2L_72978_75077,RI_chr2L_73693_75077,RI_chr2L_74573_75077 chr2L + chr2L_73693_74902 chr2L_73692_73693;chr2L_74902_74903 chr2L_73593_73692;chr2L_74903_75002 41.67 16.67 NA 57.14 NA NA 50.00 52.94 22.73 NA NA 60.00 NA NA 41.67 NA NA 60.00 NA 38.46 NA NA NA NA NA NA NA NA NA NA NA NA NA 30.00 NA NA NA NA NA NA NA 26.67 NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA K alternative_donor Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4833364_4834454;chrX_4833234_4834454;chrX_4833203_4834454;chrX_4833338_4834454 chrX_4833308_4834454 chrX_4834455_4834880;chrX_4833197_4833202 0.00 0.00 28.57 0.00 0.00 NA 5.56 6.25 5.88 12.50 NA 13.33 9.09 0.00 14.29 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 9.09 NA 0.00 5.26 NA NA 0.00 NA NA 0.00 0.00 5.88 0.00 NA NA NA NA 0.00 11.11 NA NA NA NA NA 12.50 NA NA NA K jcn_only_AD I_chr2R_5999081_6000140,E_chr2R_6001157_6001630,CG11866 chr2R + chr2R_6005374_6005536 chr2R_6005405_6005536 chr2R_6005537_6006047;chr2R_6005198_6005373 10.27 20.75 6.82 7.32 4.00 8.33 20.00 5.97 10.61 NA 12.00 9.57 6.67 20.00 12.90 11.58 11.11 0.00 10.34 10.98 14.29 3.03 9.52 11.29 12.07 13.04 15.87 11.36 30.43 10.87 12.00 11.90 4.62 14.08 10.17 8.89 22.22 8.89 11.69 10.14 6.06 9.30 5.56 9.26 3.12 0.00 9.80 8.89 5.56 15.22 11.76 20.51 8.57 13.33 10.20 8.51 14.71 0.00 K intron_retention chinmo,mRpL48 chr2L + chr2L_1710698_1710850 chr2L_1710697_1710698;chr2L_1710850_1710851 chr2L_1710599_1710697;chr2L_1710851_1711409 0.00 0.00 0.00 0.00 5.00 2.56 4.17 2.78 5.00 0.00 0.00 4.35 12.12 0.00 0.00 1.59 0.00 4.17 0.00 2.24 5.13 4.65 1.75 0.00 0.00 0.00 0.00 0.00 6.90 2.70 3.57 1.72 0.00 2.53 0.00 5.56 0.00 0.00 2.99 7.69 2.00 0.00 0.00 0.00 0.00 4.29 0.00 3.45 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette p120ctn,I_chr2R_482968_494268,I_chr2R_487593_493262 chr2R + chr2R_482968_486773 chr2R_482968_486413;chr2R_486654_486773 chr2R_486414_486653 chr2R_482868_482967;chr2R_486774_487425 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 2.86 NA NA 0.00 0.00 0.00 0.00 0.98 5.00 0.00 2.56 1.61 7.14 0.00 3.57 5.00 NA 4.35 6.67 12.50 0.00 4.76 2.13 NA 0.00 1.59 4.35 3.45 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 1.28 NA 0.00 3.85 NA NA 0.00 NA NA 0.00 K intron_retention CG30389,CEF_chr2R_17041552_17043191,I_chr2R_17044803_17047935 chr2R - chr2R_17043237_17043297 chr2R_17043236_17043237;chr2R_17043297_17043298 chr2R_17043192_17043236;chr2R_17043298_17043442 11.43 6.25 8.16 11.43 11.11 13.79 12.96 14.06 6.25 19.23 12.82 11.11 6.67 17.14 10.00 10.53 14.29 8.33 10.00 12.38 14.29 18.64 12.68 8.89 10.20 17.24 12.50 22.22 28.12 14.00 10.42 25.00 10.61 12.50 9.38 14.00 7.46 8.89 8.96 11.84 18.52 10.00 13.33 23.53 25.81 23.68 5.41 18.92 7.81 10.00 8.47 8.57 5.88 21.43 8.70 11.11 9.38 19.23 K alternative_acceptor Pms2,I_chr2R_11257708_11257764 chr2R - chr2R_11257708_11257764 chr2R_11257712_11257764 chr2R_11257765_11257864;chr2R_11257608_11257707 94.84 100.00 NA 90.00 NA NA 92.86 100.00 95.24 NA 100.00 100.00 NA 100.00 100.00 88.89 NA NA 88.89 94.44 NA 100.00 100.00 91.67 85.71 NA 90.00 100.00 NA NA NA NA 100.00 93.33 100.00 NA 100.00 87.50 90.00 100.00 100.00 92.31 NA 90.91 NA NA NA 100.00 92.86 88.89 93.75 100.00 NA NA 87.50 NA 85.71 100.00 K jcn_only_AA CG7685 chr3R + chr3R_14230882_14230959 chr3R_14230882_14230941 chr3R_14230822_14230881;chr3R_14230960_14231025 87.53 87.72 86.21 86.89 96.00 83.33 75.68 87.27 83.93 82.76 81.82 88.14 92.68 76.92 83.33 92.86 NA 88.57 90.24 84.27 80.00 89.58 89.86 91.43 94.59 97.67 91.67 98.44 80.82 75.61 91.89 97.06 80.85 97.83 93.33 68.00 90.62 92.45 87.34 89.47 81.25 91.78 78.26 90.24 88.64 83.33 83.05 81.48 89.55 86.42 92.31 86.36 84.31 85.00 86.84 92.65 89.09 73.68 K jcn_only_AD CG4699 chr3R + chr3R_11619752_11620550;chr3R_11619570_11620550;chr3R_11619776_11620550;chr3R_11619676_11620550 chr3R_11619772_11620550 chr3R_11620551_11621301;chr3R_11619539_11619569 5.56 6.06 3.92 2.99 3.45 9.76 6.25 0.00 1.75 21.74 3.85 2.67 0.00 2.50 4.26 5.88 0.00 0.00 8.70 9.21 0.00 2.13 10.84 7.84 11.76 6.67 6.25 8.33 8.33 9.38 8.70 NA 2.70 4.94 4.26 3.70 17.50 5.41 6.45 3.23 10.00 11.27 0.00 7.41 7.41 4.55 3.85 8.33 1.12 9.38 4.41 5.13 5.71 6.90 2.08 6.45 4.00 9.52 K alternative_donor CG31716,I_chr2L_10397648_10398034 chr2L + chr2L_10399689_10399767;chr2L_10399677_10399767 chr2L_10399713_10399767 chr2L_10399768_10400679;chr2L_10399595_10399676 20.27 20.00 19.64 15.09 20.37 17.39 26.87 19.78 20.15 21.88 16.36 17.48 26.32 18.37 16.90 24.72 25.53 21.82 21.67 21.32 17.86 26.67 22.86 18.75 21.05 19.61 17.24 17.39 42.50 22.00 22.37 26.47 18.84 18.39 21.62 6.52 20.27 23.91 18.57 20.93 11.90 22.03 21.28 20.00 17.02 24.14 25.00 27.27 20.18 19.15 23.88 18.75 25.00 17.24 17.24 15.56 24.44 26.53 K intron_retention CG5746 chr3R - chr3R_20174286_20174383 chr3R_20174285_20174286;chr3R_20174383_20174384 chr3R_20173869_20174285;chr3R_20174384_20174495 98.89 100.00 98.36 98.89 100.00 100.00 98.67 98.95 98.08 97.50 97.87 100.00 100.00 98.04 98.33 96.74 97.73 98.28 98.33 100.00 100.00 98.57 98.98 100.00 100.00 98.44 98.75 97.96 100.00 100.00 100.00 100.00 100.00 98.89 100.00 98.41 98.55 100.00 97.62 98.35 100.00 99.11 100.00 100.00 95.83 98.44 98.04 96.91 99.09 100.00 98.77 98.33 98.15 100.00 100.00 98.21 97.50 98.90 K jcn_only_AD SPoCk,I_chr3L_22776339_22776519 chr3L + chr3L_22766817_22767837 chr3L_22766852_22767837 chr3L_22767838_22768237;chr3L_22766783_22766816 2.50 NA NA NA NA NA NA NA 5.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Keap1 chr3R - chr3R_12902247_12902298 chr3R_12902246_12902247;chr3R_12902298_12902299 chr3R_12901967_12902246;chr3R_12902299_12902615 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.00 0.00 NA NA NA 6.67 NA 7.41 12.50 NA NA 0.00 NA NA 0.00 8.70 NA 0.00 0.00 0.00 NA NA NA NA 7.69 NA 6.90 NA NA 0.00 NA NA NA NA NA NA 6.25 K jcn_only_AA sdt,E_chrX_8118081_8119115,C_chrX_8118081_8119117,I_chrX_8131684_8131842 chrX + chrX_8118081_8119111 chrX_8118081_8118817 chrX_8117989_8118080;chrX_8119112_8119214 0.00 0.00 0.00 2.00 0.00 0.00 NA 3.57 1.54 0.00 NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 3.33 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K intron_retention CG13567,I_chr2R_19932706_19933121 chr2R - chr2R_19924864_19924917 chr2R_19924863_19924864;chr2R_19924917_19924918 chr2R_19924724_19924863;chr2R_19924918_19925344 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 1.35 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 2.22 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 2.53 K jcn_only_AA CG16971,I_chr3L_225856_225909,I_chr3L_225919_225983,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_225919_226004;chr3L_225919_225983 chr3L_225919_226219 chr3L_225910_225918;chr3L_226220_226256 55.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 55.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD cenB1A chr3R + chr3R_18946972_18947058 chr3R_18946976_18947058 chr3R_18947059_18947354;chr3R_18946959_18946971 77.53 NA 77.27 75.00 NA NA 77.78 61.54 79.37 NA NA 77.78 NA NA 71.43 NA NA 76.19 NA 93.10 NA NA NA NA NA NA NA NA NA NA NA NA 87.50 66.67 NA NA NA NA NA 90.91 NA 76.79 NA NA NA NA NA 92.31 80.49 NA NA NA NA NA 75.00 NA NA NA K jcn_only_AD MED26,I_chr4_807836_808040,I_chr4_807836_808089 chr4 - chr4_807836_808040;chr4_807836_808006 chr4_807836_808077 chr4_807736_807835;chr4_808078_808140 92.59 89.19 93.62 80.41 100.00 87.50 84.31 92.31 91.55 88.46 NA 92.22 89.80 91.49 92.86 97.06 88.57 87.88 90.57 92.50 100.00 100.00 94.12 86.49 91.30 94.12 81.36 85.00 94.74 98.53 98.21 100.00 98.44 88.66 100.00 84.44 NA 82.61 NA 97.87 92.68 88.61 97.30 92.11 NA 100.00 86.96 96.91 95.92 96.00 97.44 97.56 71.43 NA 95.16 NA NA 100.00 N alternative_donor Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11835112_11835624;chr2R_11835112_11835668 chr2R_11835112_11835509 chr2R_11834432_11835111;chr2R_11835669_11836215 90.29 87.78 86.30 89.36 89.23 91.07 96.92 94.59 93.71 91.04 88.00 88.14 82.61 87.50 91.67 86.89 94.00 91.53 92.86 88.72 89.80 84.53 88.89 88.62 95.71 98.39 85.45 89.13 93.75 87.37 93.85 89.16 87.60 91.76 85.54 91.03 85.29 90.48 90.44 90.51 95.74 88.97 92.68 93.18 87.60 87.12 91.87 90.38 94.34 82.61 91.34 88.61 88.46 90.29 94.20 87.30 93.98 92.06 K intron_retention CG16947,I_chr2L_6459995_6460559,I_chr2L_6460482_6460559,I_chr2L_6464140_6465326 chr2L - chr2L_6464140_6465528 chr2L_6464139_6464140;chr2L_6465528_6465529 chr2L_6464040_6464139;chr2L_6465529_6465568 8.70 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.70 NA NA NA NA NA NA NA NA NA NA K intron_retention Dscam,I_chr2R_3212234_3216793,I_chr2R_3212243_3212342,F_chr2R_3219886_3228832,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3212243_3213656 chr2R_3212242_3212243;chr2R_3213656_3213657 chr2R_3212143_3212242;chr2R_3213657_3213869 59.09 60.87 57.69 71.88 50.00 71.43 69.23 69.57 62.22 77.78 75.00 68.97 90.00 70.00 80.95 76.92 71.43 73.33 70.83 75.86 70.00 25.22 65.38 64.00 50.00 81.82 57.14 62.16 42.59 39.02 57.69 25.00 31.25 80.00 50.00 44.83 50.91 58.62 52.17 55.17 73.08 65.12 39.13 44.12 54.55 40.00 44.44 37.04 71.43 68.18 50.00 53.33 52.94 53.85 59.09 56.52 66.67 38.24 K alternative_donor sar1,I_chr3R_18185148_18185246 chr3R + chr3R_18182472_18183252;chr3R_18182521_18183252;chr3R_18182490_18183252 chr3R_18182467_18183252 chr3R_18183253_18183393;chr3R_18182460_18182466 12.12 10.45 14.73 8.38 18.60 14.89 13.79 14.43 12.50 3.85 13.16 14.21 13.19 13.95 8.40 13.16 8.43 9.38 13.82 11.04 13.33 3.23 13.79 2.27 17.95 12.26 15.38 8.00 9.09 21.21 15.38 7.55 10.42 16.02 13.51 11.43 7.27 8.82 4.69 11.76 15.15 12.37 9.78 12.68 12.12 14.08 10.14 19.15 10.64 4.55 11.29 15.56 12.50 11.43 11.11 9.76 7.23 6.76 K intron_retention CG7099 chr2L + chr2L_13391274_13391332 chr2L_13391273_13391274;chr2L_13391332_13391333 chr2L_13390272_13391273;chr2L_13391333_13392699 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor betaInt-nu chr2L + chr2L_21053362_21053457 chr2L_21053362_21053426 chr2L_21053285_21053361;chr2L_21053458_21053644 4.17 3.85 3.85 0.00 6.25 12.00 6.06 2.38 6.98 0.00 3.23 2.94 0.00 0.00 5.26 4.84 3.12 6.45 6.67 4.84 0.00 NA 8.33 0.00 4.00 5.56 12.50 NA 22.22 0.00 6.90 0.00 5.26 6.25 NA 0.00 6.90 0.00 0.00 0.00 6.25 4.17 7.41 3.23 NA 5.26 0.00 6.25 6.90 NA 2.38 4.76 0.00 NA 5.71 0.00 0.00 6.90 K alternative_donor B52,E_chr3R_9488770_9491174 chr3R + chr3R_9487155_9487227 chr3R_9487165_9487227 chr3R_9487228_9487314;chr3R_9487148_9487154 43.05 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 41.67 NA 31.25 NA NA NA NA NA NA 63.64 NA NA NA NA NA NA NA NA NA NA 33.33 45.45 NA NA NA NA 36.36 NA 53.33 66.67 NA NA NA NA 44.44 NA NA NA 33.33 K cassette kst,I_chr3L_3365752_3365816,I_chr3L_3367008_3367514 chr3L + chr3L_3366311_3367514 chr3L_3366311_3366443;chr3L_3366963_3367514 chr3L_3366444_3366962 chr3L_3366200_3366310;chr3L_3367515_3367614 67.08 67.08 67.78 94.81 66.30 69.19 48.60 53.79 63.37 69.53 48.26 68.02 38.38 57.24 57.22 94.49 54.86 50.10 57.68 57.45 60.61 83.45 74.96 69.43 72.88 54.86 67.64 79.39 78.52 86.89 61.21 72.45 73.11 57.91 67.22 70.07 75.08 74.34 69.60 65.39 65.89 60.90 55.67 64.56 67.75 69.93 64.40 70.57 53.64 70.60 65.69 74.77 67.01 66.88 51.18 67.64 65.97 70.37 K jcn_only_AD Aldolase,I_chr3R_22083764_22086684,I_chr3R_22086804_22086875 chr3R - chr3R_22083764_22087057;chr3R_22083764_22086875 chr3R_22083764_22086879 chr3R_22083664_22083763;chr3R_22087058_22087313 0.25 0.22 0.00 0.54 0.00 0.54 0.12 0.50 0.09 0.31 0.84 0.40 0.35 0.00 0.00 0.00 0.00 0.22 0.22 0.37 0.24 0.00 0.31 0.46 0.29 0.00 0.18 0.13 0.34 0.21 0.34 0.68 0.00 0.00 0.70 0.63 0.26 0.16 0.18 0.33 0.33 0.61 0.00 0.00 0.24 0.25 0.00 0.42 0.44 0.40 0.00 0.00 1.09 1.49 0.17 0.71 0.57 0.65 K jcn_only_AA I_chrX_15223901_15223968,HDAC6,I_chrX_15232958_15233665 chrX + chrX_15232056_15232107 chrX_15232056_15232104 chrX_15230648_15232055;chrX_15232108_15232698 100.00 100.00 100.00 NA NA 100.00 100.00 97.14 98.48 NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 97.30 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Fps85D,I_chr3R_5194729_5194776,I_chr3R_5216796_5218450 chr3R - chr3R_5194706_5194776 chr3R_5194729_5194776 chr3R_5194777_5194876;chr3R_5194629_5194705 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 2.04 0.00 2.56 1.25 0.00 2.44 0.00 1.67 0.00 0.00 1.33 1.09 0.00 0.00 1.67 0.00 0.00 2.22 0.00 7.14 2.50 0.00 1.69 2.78 2.13 1.23 0.00 0.00 0.00 3.33 1.85 1.75 2.27 0.95 0.00 3.45 0.00 0.00 0.00 1.92 2.08 2.00 2.27 0.00 0.00 0.00 0.00 0.00 2.56 0.00 K intron_retention fu chrX + chrX_18554060_18554127 chrX_18554059_18554060;chrX_18554127_18554128 chrX_18553485_18554059;chrX_18554128_18554701 4.60 5.88 0.00 38.46 NA NA 12.50 9.09 5.41 NA 0.00 0.00 NA NA 0.00 4.55 NA 0.00 0.00 4.65 NA 28.57 10.71 12.50 11.11 12.50 31.58 38.46 0.00 0.00 0.00 NA 10.53 0.00 NA 15.38 0.00 0.00 4.76 9.09 NA 0.00 NA 0.00 0.00 NA 6.67 0.00 7.14 10.00 12.50 NA 0.00 NA 0.00 NA 0.00 0.00 K intron_retention vav chrX + chrX_19163685_19163753 chrX_19163684_19163685;chrX_19163753_19163754 chrX_19163517_19163684;chrX_19163754_19164583 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 13.79 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG12811,RI_chr3R_5873666_5874292 chr3R - chr3R_5873666_5874292 chr3R_5873666_5874138 chr3R_5873566_5873665;chr3R_5874293_5874392 100.00 100.00 100.00 100.00 100.00 100.00 97.92 98.68 100.00 95.00 100.00 98.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.78 100.00 100.00 100.00 100.00 95.24 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 98.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.85 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.04 97.56 100.00 100.00 K intron_retention CG18473 chr3R + chr3R_5189166_5189243 chr3R_5189165_5189166;chr3R_5189243_5189244 chr3R_5188962_5189165;chr3R_5189244_5189756 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.63 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.55 0.00 0.00 4.35 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention gw,I_chr4_672810_672930,I_chr4_679135_681671 chr4 - chr4_671657_672930 chr4_671656_671657;chr4_672930_672931 chr4_670618_671656;chr4_672931_673030 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.38 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG30492,C_chr2R_3522706_3523025,RI_chr2R_3536203_3536977,I_chr2R_3543397_3543455 chr2R + chr2R_3522706_3526102 chr2R_3525878_3526102 chr2R_3526103_3526410 0.00 0.00 3.57 0.00 4.17 0.00 NA 3.39 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.72 0.00 NA NA 0.00 0.00 NA 4.00 0.00 0.00 0.00 0.00 1.82 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.33 K intron_retention CG8814 chr2L + chr2L_2875265_2875385 chr2L_2875264_2875265;chr2L_2875385_2875386 chr2L_2874800_2875264;chr2L_2875386_2876410 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 11.76 0.00 0.00 0.00 0.00 4.26 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 10.53 0.00 0.00 0.00 0.00 0.00 K multi_cassette Asph,C_chr2R_12000224_12000293,RI_chr2R_12000764_12001150,I_chr2R_12001184_12001280,I_chr2R_12002559_12002858,I_chr2R_12003264_12003325 chr2R + chr2R_12000475_12002276 chr2R_12000475_12000685;chr2R_12000764_12001280;chr2R_12001389_12001539;chr2R_12002139_12002276 chr2R_12000686_12000763;chr2R_12001281_12001388;chr2R_12001540_12002138 chr2R_12000452_12000474;chr2R_12002277_12002371 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD sec24,I_chr2R_5768722_5769689 chr2R - chr2R_5768722_5769384;chr2R_5768722_5769687 chr2R_5768722_5769689 chr2R_5768622_5768721;chr2R_5769690_5769789 2.67 0.00 0.00 2.56 0.00 3.49 2.19 1.47 2.89 5.17 9.62 4.24 1.27 1.98 3.48 4.62 2.22 4.88 4.26 2.00 4.69 1.50 1.96 5.30 0.81 0.00 3.57 3.00 2.99 1.41 0.80 1.92 2.56 1.46 2.88 1.92 3.57 4.55 2.67 0.98 0.00 1.92 5.21 3.45 9.52 2.27 3.39 4.62 4.60 3.95 3.61 1.43 2.86 0.00 4.51 1.69 4.48 0.00 K jcn_only_AA Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754284_15755148;chrX_15754284_15755021;chrX_15754284_15755184;chrX_15754284_15755409;chrX_15754284_15755256;chrX_15754284_15754777;chrX_15754284_15755416;chrX_15754284_15755268 chrX_15754284_15755172 chrX_15754256_15754283 0.00 0.00 0.00 0.46 1.02 0.00 0.00 0.00 0.30 1.49 0.00 0.40 0.00 0.67 0.00 0.27 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.90 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.88 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.60 2.56 0.00 0.00 0.91 0.00 1.79 0.00 0.68 0.00 0.00 0.65 0.00 0.85 0.00 K intron_retention crm,I_chrX_2635555_2635621,I_chrX_2636831_2636971 chrX - chrX_2629362_2629428 chrX_2629361_2629362;chrX_2629428_2629429 chrX_2629210_2629361;chrX_2629429_2629801 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.25 5.41 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 2.56 0.00 1.43 1.41 0.00 0.00 0.93 0.00 0.00 0.00 0.00 5.00 0.00 0.00 1.61 0.00 0.00 2.27 2.53 2.47 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 5.56 0.00 K intron_retention CG5859 chr2R + chr2R_12740486_12740552 chr2R_12740485_12740486;chr2R_12740552_12740553 chr2R_12739857_12740485;chr2R_12740553_12740721 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG17471,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1217104_1217473;chr4_1217104_1217333;chr4_1217104_1217383 chr4_1217104_1217302 chr4_1217009_1217103;chr4_1217474_1217480 0.00 NA NA NA NA NA 0.00 2.70 0.00 NA NA 0.00 0.00 NA NA 2.63 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 2.70 NA NA NA NA NA NA NA NA NA K alternative_acceptor Dsor1,chrX_9141950_9142262.0,chrX_9142356_9142574.0 chrX + chrX_9141942_9142583 chrX_9141942_9142574 chrX_9141376_9141941;chrX_9142584_9143214 81.53 75.00 NA 80.00 NA 81.82 NA 93.33 78.95 60.00 77.78 86.67 63.64 87.50 60.00 NA 85.71 NA 87.50 69.57 88.89 80.95 73.08 92.31 87.50 NA 78.57 63.64 87.50 75.00 90.91 100.00 NA 91.67 88.89 88.89 76.19 72.73 93.33 71.43 NA 83.33 NA 72.73 NA 85.71 91.67 NA 81.25 72.22 90.91 77.78 81.82 91.67 72.73 80.00 NA NA K cassette CG15817 chr3R + chr3R_25055300_25056802 chr3R_25055300_25056046;chr3R_25056533_25056802 chr3R_25056047_25056532 chr3R_25055231_25055299;chr3R_25056803_25057820 100.00 100.00 95.83 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 94.44 89.19 97.67 100.00 96.30 96.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 96.97 96.43 100.00 97.14 100.00 96.88 98.21 100.00 97.83 100.00 96.97 100.00 100.00 93.75 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention I_chr3L_5758117_5758186,Ppat-Dpck chr3L - chr3L_5761234_5761300 chr3L_5761233_5761234;chr3L_5761300_5761301 chr3L_5760074_5761233;chr3L_5761301_5761933 0.00 0.00 NA 0.00 NA NA 0.00 0.00 6.45 NA NA 0.00 NA NA 0.00 22.22 NA NA NA 0.00 NA 9.68 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA 0.00 NA 3.70 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA K intron_retention CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_155591_155927,I_chr4_157794_157864 chr4 + chr4_154551_155450 chr4_154550_154551;chr4_155450_155451 chr4_154513_154550;chr4_155451_155590 96.82 100.00 100.00 93.33 91.67 100.00 93.48 93.10 98.33 NA 100.00 96.77 100.00 96.77 95.65 93.48 100.00 94.44 100.00 100.00 100.00 NA 94.12 91.67 90.00 93.75 100.00 NA 90.00 87.50 94.74 NA 100.00 97.78 88.89 NA 100.00 NA NA 94.44 87.50 96.88 95.65 95.45 NA 100.00 100.00 100.00 100.00 NA 91.67 100.00 NA NA 100.00 100.00 100.00 91.67 K intron_retention mrt,I_chr3R_23105765_23108338 chr3R - chr3R_23104826_23104899 chr3R_23104825_23104826;chr3R_23104899_23104900 chr3R_23102971_23104825;chr3R_23104900_23105764 0.00 0.00 0.00 11.11 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 4.65 0.00 0.00 1.43 0.00 0.00 4.35 2.56 6.25 0.00 0.00 0.00 0.00 1.61 3.70 0.00 6.45 0.00 1.41 0.00 1.32 0.00 4.62 0.00 0.00 0.00 6.12 8.77 3.33 2.82 3.12 2.35 0.00 0.00 0.00 5.26 0.00 0.00 0.00 K intron_retention noncoding_21631,CG9904 chrX + chrX_2511951_2512028 chrX_2511950_2511951;chrX_2512028_2512029 chrX_2511804_2511950;chrX_2512029_2512089 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.53 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG14614,REI_chrX_21856047_21856229,RI_chrX_21856896_21857109 chrX - chrX_21856924_21857109 chrX_21856923_21856924;chrX_21857109_21857110 chrX_21856498_21856923;chrX_21857110_21857209 98.15 97.96 97.78 100.00 100.00 100.00 95.31 97.22 98.15 100.00 100.00 98.90 97.50 97.78 98.15 97.96 97.62 97.87 100.00 98.72 97.67 97.37 98.21 100.00 100.00 97.73 100.00 100.00 100.00 92.31 97.92 100.00 100.00 100.00 97.44 100.00 96.15 97.30 98.04 95.74 100.00 99.03 97.50 97.56 93.33 96.88 100.00 95.83 98.65 96.55 96.30 96.97 100.00 100.00 98.15 100.00 100.00 100.00 K intron_retention CG12582 chr3R + chr3R_28045_28097 chr3R_28044_28045;chr3R_28097_28098 chr3R_27581_28044;chr3R_28098_28519 0.69 0.00 0.50 1.79 0.00 1.76 0.00 1.67 1.10 1.15 2.27 1.62 0.56 1.00 1.27 1.15 0.00 0.69 0.42 0.72 0.00 0.00 1.18 0.54 0.00 1.09 1.95 9.78 0.85 0.68 0.39 0.00 2.12 1.55 0.00 2.34 2.61 0.85 0.54 1.02 0.00 2.25 0.00 0.44 0.00 0.91 0.58 2.03 1.77 0.45 0.42 2.73 0.00 0.66 1.71 0.00 0.00 0.00 K jcn_only_AD I_chr2L_822032_822857,dock chr2L + chr2L_826508_829304 chr2L_826512_829304 chr2L_829305_829468;chr2L_826008_826507 1.41 0.00 1.79 1.85 0.00 1.56 1.11 3.00 2.11 4.23 3.77 1.67 3.85 0.00 0.00 0.93 4.17 0.00 2.86 0.00 4.26 1.61 1.11 1.23 1.82 0.00 2.27 0.00 0.00 0.00 0.00 0.00 2.04 0.93 0.00 0.00 0.00 0.00 1.03 0.00 3.57 0.71 2.17 0.00 2.27 3.08 0.00 2.33 0.00 5.17 1.00 1.41 6.25 3.70 4.76 2.50 2.04 1.43 K jcn_only_AA MED1 chr3L - chr3L_21623009_21624032 chr3L_21623014_21624032 chr3L_21624033_21625939;chr3L_21621425_21623008 88.73 77.42 NA NA NA NA NA NA 86.21 77.42 NA 88.89 NA NA NA NA NA 85.71 NA 96.15 NA 90.48 95.83 96.43 NA NA 90.91 NA 93.94 95.83 52.38 94.74 85.87 NA 89.29 96.77 88.89 52.63 97.78 85.42 91.18 67.86 NA 80.65 92.65 90.00 88.57 87.00 82.76 85.71 76.32 NA 88.89 78.95 NA 71.88 86.21 89.42 K alternative_donor CG4699 chr3R + chr3R_11624200_11624445;chr3R_11624133_11624445;chr3R_11624190_11624445 chr3R_11624127_11624445 chr3R_11624446_11624758;chr3R_11623809_11624126 11.54 22.50 12.50 9.38 14.63 3.03 3.64 5.17 8.75 7.69 8.33 12.68 8.33 5.41 13.21 7.89 5.41 3.57 8.89 13.79 8.82 4.96 12.50 16.13 13.89 12.20 12.73 21.43 18.18 12.94 9.09 6.90 8.70 8.20 8.47 21.05 13.04 12.77 8.96 3.17 5.71 14.58 7.50 13.21 14.89 11.69 10.81 11.54 4.26 14.00 10.20 3.12 20.93 15.62 19.23 18.92 11.76 14.05 K alternative_last_exon AnnIX chr3R + chr3R_16894742_16896445,chr3R_16894742_16895999 chr3R_16894742_16895034 chr3R_16896446_16896707 chr3R_16895035_16895629 chr3R_16894560_16894741 37.43 34.78 31.41 37.06 30.55 34.32 38.80 40.66 37.34 51.25 47.86 37.71 72.50 39.04 36.15 40.58 32.79 27.68 33.98 38.12 36.50 37.24 34.02 35.22 39.02 26.99 39.33 55.46 41.57 40.57 36.83 43.10 37.58 41.50 39.26 31.27 36.36 35.69 31.28 52.52 39.87 35.98 40.35 39.74 31.17 40.87 30.65 47.69 38.54 41.59 37.43 39.64 35.52 36.18 34.79 35.36 31.38 47.25 K intron_retention E(bx),I_chr3L_246324_246699 chr3L - chr3L_246324_246794 chr3L_246323_246324;chr3L_246794_246795 chr3L_246224_246323;chr3L_246795_246799 68.75 70.00 81.82 52.38 54.55 66.67 95.83 60.61 73.33 63.64 NA 75.86 79.17 66.67 53.85 75.68 62.50 50.00 62.50 43.24 70.00 NA 75.00 75.00 63.64 66.67 77.78 NA 80.00 NA 63.16 NA 88.89 68.97 66.67 50.00 65.22 50.00 70.00 80.00 NA 74.07 NA 42.86 NA NA NA 71.43 75.86 NA 54.55 71.43 NA NA 68.75 NA NA NA K intron_retention Vap-33-1 chrX + chrX_3845601_3845668 chrX_3845600_3845601;chrX_3845668_3845669 chrX_3845448_3845600;chrX_3845669_3845778 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.20 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.40 0.00 0.00 0.32 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 1.16 1.20 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7091,RI_chr3R_8805541_8805680,I_chr3R_8809774_8809832 chr3R + chr3R_8805541_8805676 chr3R_8805540_8805541;chr3R_8805676_8805677 chr3R_8805441_8805540;chr3R_8805677_8805918 1.43 0.00 2.56 8.13 0.00 0.00 4.08 4.10 2.14 0.00 0.00 3.42 1.47 1.92 3.53 0.00 1.37 1.72 3.61 1.44 0.00 5.00 0.00 0.00 NA 0.00 7.41 0.00 3.70 0.00 2.78 2.33 3.23 1.83 0.00 NA 0.00 0.00 0.00 1.39 3.45 1.43 1.35 4.55 6.25 4.84 0.00 3.23 3.68 0.00 0.00 0.00 2.78 0.00 0.00 2.86 0.00 0.00 K jcn_only_AD CG9350,I_chr2R_16913113_16913165 chr2R + chr2R_16913109_16913165 chr2R_16913113_16913165 chr2R_16913166_16913260;chr2R_16913013_16913108 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.43 0.00 0.68 0.66 0.94 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.98 0.58 0.00 0.00 0.00 0.58 1.44 0.60 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.53 0.00 0.94 0.25 0.00 K cassette sun chrX - chrX_15742038_15742918 chrX_15742038_15742330;chrX_15742381_15742918 chrX_15742331_15742380 chrX_15741454_15742037;chrX_15742919_15743049 0.19 0.20 0.43 0.90 0.00 0.41 0.00 0.64 0.47 0.00 0.57 0.24 0.56 0.45 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.19 0.00 0.00 0.50 0.00 0.51 0.00 0.31 0.35 0.35 0.00 0.29 0.35 0.00 0.29 0.00 0.21 0.18 0.33 0.24 0.53 0.00 0.55 0.18 0.19 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.34 0.00 0.11 0.22 K intron_retention sol chrX + chrX_21224693_21225120 chrX_21224692_21224693;chrX_21225120_21225121 chrX_21224441_21224692;chrX_21225121_21225440 9.41 5.56 6.82 10.42 5.13 12.90 12.77 13.33 8.33 6.06 8.33 13.24 13.64 11.11 10.42 8.16 11.43 5.00 25.00 7.95 5.00 8.24 10.81 10.77 6.00 3.77 10.17 12.50 10.00 8.00 5.00 12.12 6.98 14.29 10.87 10.77 8.41 4.17 9.64 9.41 4.26 10.13 11.76 9.52 6.15 10.87 6.82 10.53 8.86 0.00 5.41 6.25 4.65 5.71 10.87 9.52 9.52 6.82 K intron_retention eIF3-S10,I_chr3R_259324_259488 chr3R - chr3R_258189_258238 chr3R_258188_258189;chr3R_258238_258239 chr3R_255950_258188;chr3R_258239_258682 0.00 0.00 0.97 0.70 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.88 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 2.83 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.55 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 1.92 0.55 0.45 0.00 0.00 1.10 K intron_retention alpha-Spec chr3L - chr3L_1781699_1781758 chr3L_1781698_1781699;chr3L_1781758_1781759 chr3L_1781095_1781698;chr3L_1781759_1783682 0.00 0.00 0.00 0.29 0.33 0.00 0.00 0.18 0.23 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.12 0.00 0.00 0.00 0.48 0.43 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.10 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 K alternative_acceptor Khc-73 chr2R - chr2R_11409446_11409506 chr2R_11409449_11409506 chr2R_11409507_11409609;chr2R_11409380_11409445 57.79 63.16 61.11 57.69 75.00 68.75 57.14 48.48 60.98 47.83 57.14 53.85 56.25 60.00 65.00 66.67 57.14 45.00 47.06 51.85 53.85 58.33 53.49 58.82 63.64 55.00 51.52 81.25 62.50 68.18 50.00 50.00 61.11 55.00 56.25 64.71 50.00 68.00 65.71 54.55 NA 51.35 66.67 72.00 NA 58.33 68.75 45.45 51.72 55.56 55.26 61.11 71.43 52.63 57.89 65.00 59.09 NA K alternative_donor I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10065706_10065776;chr2R_10065709_10065776 chr2R_10065652_10065776 chr2R_10065777_10066101;chr2R_10065603_10065651 0.00 0.00 0.00 0.00 0.00 1.64 0.00 1.08 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 1.33 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.88 0.00 0.00 0.00 0.00 0.78 0.00 1.37 0.00 0.00 0.00 0.79 0.89 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG33298 chr2L + chr2L_9495657_9496144 chr2L_9495712_9496144 chr2L_9496145_9496255;chr2L_9495488_9495656 46.88 NA 28.57 41.18 NA 41.67 70.83 58.82 50.00 NA NA 44.00 46.67 45.83 46.15 60.00 40.00 NA 38.89 41.67 60.00 75.00 36.36 NA NA 41.18 44.44 NA NA NA 53.33 NA 66.67 46.88 NA NA NA NA NA 55.56 NA 53.12 47.06 NA NA NA NA 33.33 58.62 NA 75.00 NA NA NA 50.00 NA NA NA K intron_retention CG8765,RI_chr3L_19679741_19679894,I_chr3L_19680192_19680247 chr3L - chr3L_19680186_19680247 chr3L_19680185_19680186;chr3L_19680247_19680248 chr3L_19680095_19680185;chr3L_19680248_19680347 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 95.45 100.00 100.00 100.00 100.00 100.00 81.82 100.00 96.15 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA K intron_retention bif,I_chrX_11581793_11583233,REI_chrX_11585551_11586831 chrX + chrX_11583577_11586831 chrX_11583576_11583577;chrX_11586831_11586832 chrX_11583234_11583576;chrX_11586832_11586899 17.39 NA NA NA NA NA NA NA 38.46 NA NA NA 9.52 NA NA NA NA NA NA 36.36 NA 31.25 NA NA NA NA NA NA NA NA NA 0.00 6.25 36.36 NA NA NA NA NA 16.67 NA 30.77 NA NA NA 17.39 NA 13.89 21.43 NA NA NA NA NA NA NA NA 2.38 K intron_retention CG42574,I_chr3R_618802_618939,I_chr3R_621543_625413,I_chr3R_621546_625413 chr3R - chr3R_621546_622210 chr3R_621545_621546;chr3R_622210_622211 chr3R_621459_621545;chr3R_622211_622332 16.67 23.08 NA 3.45 NA NA 18.18 16.67 14.29 NA NA 18.75 NA NA 25.00 29.41 NA NA NA 3.85 NA 27.85 17.50 10.53 13.04 NA 17.65 26.19 15.00 35.71 0.00 NA 14.29 9.09 17.39 12.12 15.00 11.76 10.53 25.00 NA 11.11 NA 20.83 NA NA NA 20.00 9.38 NA 25.00 25.00 NA NA 13.33 NA NA NA K intron_retention Dg chr2R - chr2R_11973126_11975809 chr2R_11973125_11973126;chr2R_11975809_11975810 chr2R_11973069_11973125;chr2R_11975810_11975870 0.84 1.25 2.23 1.69 1.72 0.56 0.00 0.98 0.65 1.15 0.00 0.98 0.00 1.52 0.49 1.95 0.84 0.00 0.00 0.62 1.48 1.40 1.72 1.76 1.27 2.52 1.23 0.00 0.51 0.00 0.56 0.00 0.00 1.36 0.56 1.54 2.19 2.68 0.63 0.00 0.00 2.22 0.00 0.97 0.00 0.00 1.27 0.00 0.81 0.00 1.75 1.18 0.00 1.41 1.01 1.09 0.00 0.00 K jcn_only_AD Pdp1,RI_chr3L_7809841_7810536,I_chr3L_7813130_7818683,I_chr3L_7831960_7846282 chr3L - chr3L_7810763_7811177 chr3L_7810763_7811168 chr3L_7810537_7810762;chr3L_7811178_7811323 85.25 82.00 96.20 92.21 86.84 76.92 85.05 91.43 83.44 90.67 93.85 90.35 95.65 81.54 78.41 90.82 88.89 86.57 85.92 89.30 86.96 77.78 88.57 83.12 83.82 90.12 80.95 85.25 76.74 78.72 82.76 76.74 83.91 90.24 86.67 82.54 85.48 87.30 83.87 84.16 71.05 86.47 90.79 83.52 81.25 88.24 86.49 84.72 87.88 91.67 82.02 84.62 80.95 86.21 91.57 80.36 82.76 83.33 K intron_retention GstS1,I_chr2R_12981964_12982021 chr2R - chr2R_12982202_12982269 chr2R_12982201_12982202;chr2R_12982269_12982270 chr2R_12982034_12982201;chr2R_12982270_12982565 0.00 NA 0.00 0.00 NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 6.67 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA K alternative_donor CG32343,I_chr3L_326540_326703,RI_chr3L_326725_326866 chr3L - chr3L_326540_326866 chr3L_326540_326703 chr3L_326440_326539;chr3L_326867_326966 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 4.76 NA 0.00 0.00 0.00 0.00 2.13 0.00 0.00 4.76 0.00 0.00 0.00 2.22 0.00 2.27 0.00 0.00 0.00 3.70 0.00 2.56 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Mes-4,I_chr3R_23761704_23761783 chr3R - chr3R_23761704_23761783 chr3R_23761716_23761783 chr3R_23761784_23761883;chr3R_23761604_23761703 98.55 100.00 97.75 97.59 100.00 97.47 99.15 98.64 99.51 98.11 94.64 98.76 97.30 96.15 100.00 97.32 100.00 100.00 97.92 97.95 97.37 100.00 100.00 98.11 98.44 97.53 100.00 100.00 100.00 98.55 98.86 96.49 100.00 99.19 98.77 98.65 98.15 98.63 99.00 98.03 96.00 98.78 98.53 96.83 98.53 100.00 98.51 98.28 100.00 98.51 100.00 97.70 95.65 100.00 97.22 100.00 100.00 97.87 K intron_retention MEP-1,CG42245,noncoding_10195,CG1143 chr3L + chr3L_2632122_2633537 chr3L_2632121_2632122;chr3L_2633537_2633538 chr3L_2631977_2632121;chr3L_2633538_2633809 6.25 0.00 0.00 0.00 0.00 0.00 9.62 9.09 4.29 5.00 0.00 6.98 6.25 8.00 0.00 10.00 10.53 0.00 6.25 3.57 10.00 26.92 6.06 7.41 20.00 11.11 13.64 0.00 6.45 6.90 6.25 17.65 8.70 5.26 0.00 0.00 10.26 9.09 6.25 4.44 6.90 8.51 10.71 10.26 4.76 6.67 7.69 6.45 3.77 12.00 6.06 6.25 0.00 6.25 5.88 8.33 17.39 0.00 K jcn_only_AA CG8173,I_chrX_17602681_17603175 chrX - chrX_17602681_17603214 chrX_17602699_17603214 chrX_17603215_17603275;chrX_17602581_17602680 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 1.35 0.00 0.90 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Liprin-alpha chr2L + chr2L_6726719_6727862 chr2L_6726719_6727193;chr2L_6727335_6727862 chr2L_6727194_6727334 chr2L_6726599_6726718;chr2L_6727863_6728780 97.96 96.77 97.22 100.00 96.97 100.00 100.00 100.00 97.89 100.00 97.22 98.72 80.00 93.94 97.87 100.00 96.77 96.88 97.50 98.63 94.44 98.53 98.31 97.73 96.67 90.48 100.00 100.00 95.74 98.04 97.73 100.00 98.55 98.41 100.00 93.18 100.00 100.00 96.30 100.00 96.67 98.98 100.00 97.62 100.00 100.00 100.00 100.00 97.44 95.00 93.75 97.06 93.55 100.00 97.96 96.55 95.00 97.96 K alternative_acceptor Mnt chrX + chrX_3587966_3592777;chrX_3587966_3592372;chrX_3587966_3592150 chrX_3587966_3592774 chrX_3587244_3587965;chrX_3592778_3593060 0.00 0.00 3.23 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 3.03 0.00 5.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD skpA chrX + chrX_550433_551131;chrX_550498_551131;chrX_550818_551131;chrX_550638_551131;chrX_550774_551131;chrX_550654_551131 chrX_550523_551131 chrX_551132_551937;chrX_550426_550432 66.88 57.92 61.84 58.23 65.13 63.31 61.40 56.03 60.43 75.61 63.69 62.70 66.12 57.53 66.88 66.55 59.85 49.18 57.39 66.87 63.31 83.90 71.98 61.01 65.14 59.68 81.31 82.63 81.14 78.08 72.68 78.69 78.65 66.82 63.33 88.62 79.01 74.21 73.21 83.08 78.74 60.78 64.41 76.50 77.04 79.59 74.56 84.38 57.03 67.93 70.44 70.59 75.74 70.80 65.17 74.21 65.15 79.30 K intron_retention puc,CG7878,I_chr3R_3952846_3953762 chr3R + chr3R_3931818_3933953 chr3R_3931817_3931818;chr3R_3933953_3933954 chr3R_3931090_3931817;chr3R_3933954_3934100 0.00 0.72 0.48 0.63 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.65 0.00 0.00 0.00 2.21 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor gus,I_chr2R_1009158_1009345,RI_chr2R_1009158_1011540,I_chr2R_1009346_1015730 chr2R - chr2R_1009158_1015651;chr2R_1009158_1015735 chr2R_1009158_1015801 chr2R_1009058_1009157;chr2R_1015802_1015818 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_donor RpL6 chr3R - chr3R_27421324_27421769;chr3R_27421324_27421398 chr3R_27421324_27421603 chr3R_27421243_27421323;chr3R_27421770_27422070 0.02 0.00 0.00 0.01 0.04 0.00 0.02 0.02 0.02 0.06 0.00 0.02 0.00 0.03 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.01 0.02 0.00 0.02 0.10 0.12 0.21 0.00 0.02 0.00 0.04 0.02 0.00 0.02 0.02 0.00 0.02 0.02 0.07 0.01 0.03 0.00 0.02 0.01 0.01 0.04 0.02 0.02 0.00 0.00 0.02 0.01 0.02 0.02 0.01 0.04 K multi_cassette Nipped-B,I_chr2R_580301_580515,I_chr2R_580453_580515,I_chr2R_580989_582555,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_580301_582623 chr2R_580301_580358;chr2R_580456_580515;chr2R_580674_580752;chr2R_580989_582623 chr2R_580359_580455;chr2R_580516_580673;chr2R_580753_580988 chr2R_580236_580300;chr2R_582624_582655 100.00 100.00 100.00 96.97 92.86 94.44 98.48 98.11 98.46 100.00 100.00 97.96 100.00 100.00 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 96.67 100.00 88.24 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 97.22 93.75 94.12 90.48 100.00 100.00 100.00 100.00 K alternative_acceptor noncoding_13380,RI_chr3L_18858228_18858357 chr3L - chr3L_18857669_18858357 chr3L_18858228_18858357 chr3L_18858358_18858457;chr3L_18857324_18857668 42.86 33.33 66.67 100.00 NA 75.00 NA NA 25.00 NA NA 50.00 NA NA 28.57 100.00 NA 33.33 NA 41.67 NA NA 22.22 30.00 33.33 NA 14.29 NA 60.00 NA NA NA NA 37.50 NA 42.86 33.33 40.00 50.00 42.86 NA 55.56 NA NA 50.00 27.27 50.00 50.00 25.00 100.00 22.22 25.00 57.14 NA NA 42.86 80.00 50.00 K intron_retention CSN5 chr3R + chr3R_12296792_12296850 chr3R_12296791_12296792;chr3R_12296850_12296851 chr3R_12296215_12296791;chr3R_12296851_12297070 0.00 2.38 0.00 2.74 0.00 0.00 0.00 2.60 1.20 0.00 3.23 3.33 4.88 0.00 4.17 0.00 0.00 0.00 0.00 1.75 0.00 0.00 1.52 0.00 0.00 0.00 0.00 6.25 4.65 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 2.44 0.00 1.28 0.00 1.85 0.00 4.29 1.49 0.00 3.30 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 2.94 K intron_retention dgt5 chr2R - chr2R_8355075_8355137 chr2R_8355074_8355075;chr2R_8355137_8355138 chr2R_8353850_8355074;chr2R_8355138_8355415 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA capu,I_chr2L_3884519_3902594,I_chr2L_3887800_3888648,I_chr2L_3887896_3888648 chr2L - chr2L_3889785_3893261;chr2L_3887557_3893261 chr2L_3887800_3893261 chr2L_3893262_3893604 1.35 1.47 1.43 1.11 0.00 0.00 2.25 0.00 1.15 0.00 1.41 0.00 1.89 0.00 2.30 0.00 0.00 1.14 0.00 0.58 1.64 7.19 1.03 0.00 4.84 11.32 0.00 6.67 3.97 3.36 0.00 1.82 3.57 0.00 6.78 22.55 0.00 2.00 2.94 2.43 6.98 1.65 0.00 6.00 2.44 0.95 2.94 3.03 0.00 0.00 0.90 0.00 0.00 5.41 1.02 1.61 0.00 1.35 K intron_retention CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4991263_4991560 chr2L_4991262_4991263;chr2L_4991560_4991561 chr2L_4991145_4991262;chr2L_4991561_4992436 1.03 1.58 1.05 1.88 2.40 0.00 0.82 1.30 1.01 0.54 0.00 2.08 2.67 0.72 1.87 1.99 5.88 0.00 2.05 0.81 0.00 1.67 0.63 1.22 1.11 0.40 3.01 4.58 0.22 0.59 1.50 0.68 0.42 1.99 0.83 0.73 1.03 2.00 0.99 1.21 0.46 2.35 0.00 1.23 0.35 1.01 1.04 0.36 2.03 0.44 0.37 1.24 0.00 1.42 1.83 0.83 1.18 0.60 K jcn_only_AD I_chr3L_20306985_20307177,CG6680 chr3L + chr3L_20310517_20311483 chr3L_20310889_20311483 chr3L_20311484_20311913;chr3L_20310328_20310516 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 NA NA 98.53 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 96.49 NA 100.00 97.92 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 98.48 100.00 100.00 100.00 96.77 100.00 100.00 97.30 NA 100.00 100.00 98.31 97.37 100.00 96.77 100.00 100.00 100.00 100.00 K intron_retention CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_120081_120167 chr2L_120080_120081;chr2L_120167_120168 chr2L_119981_120080;chr2L_120168_120196 23.33 23.33 25.00 20.41 35.71 25.00 24.00 37.93 23.44 12.50 22.73 22.22 37.50 25.71 25.00 29.33 28.12 30.77 20.93 18.60 25.00 6.25 32.00 20.83 29.41 22.22 40.62 19.05 NA 17.86 16.67 8.70 21.74 31.25 32.00 10.71 30.77 18.18 16.67 22.50 33.33 29.55 21.88 18.92 10.53 11.54 25.00 16.22 27.94 25.00 25.93 21.88 NA 12.50 27.27 36.00 17.65 13.64 K jcn_only_AD sqh,I_chrX_6118043_6119039,I_chrX_6118150_6118725,I_chrX_6118150_6118729,I_chrX_6118150_6118790,I_chrX_6118150_6118800 chrX - chrX_6118150_6118729;chrX_6118150_6119035;chrX_6118150_6118725;chrX_6118150_6119039 chrX_6118150_6118949 chrX_6118050_6118149;chrX_6119040_6119139 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.22 0.22 0.16 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.33 0.00 0.18 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 K intron_retention CG18659,E_chr2R_5011363_5019110,RI_chr2R_5013572_5014531,I_chr2R_5016147_5016997 chr2R - chr2R_5011651_5014923 chr2R_5011650_5011651;chr2R_5014923_5014924 chr2R_5011194_5011650;chr2R_5014924_5015382 89.73 90.00 NA 56.25 NA 87.50 87.50 91.67 89.47 NA NA 92.86 NA NA 90.00 NA NA NA NA 81.25 54.55 50.00 76.47 91.67 93.75 NA 90.91 89.47 NA NA 100.00 NA NA 93.33 NA 88.89 90.48 NA 69.23 92.86 72.73 81.25 NA 81.82 NA 90.00 NA NA 90.00 90.00 71.43 NA NA NA NA 90.91 NA NA K jcn_only_AA slgA,I_chrX_21253735_21253820 chrX + chrX_21252091_21253206 chrX_21252091_21252760 chrX_21251909_21252090 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA NA NA 0.00 NA NA 0.00 0.00 2.56 0.00 NA 0.00 NA 0.00 4.76 NA 0.00 2.86 0.00 NA 0.00 NA NA NA NA 0.00 NA NA K intron_retention Arp5 chr3R + chr3R_14012037_14012094 chr3R_14012036_14012037;chr3R_14012094_14012095 chr3R_14012027_14012036;chr3R_14012095_14012126 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.17 0.00 NA 0.00 1.92 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.04 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Atox1,R_chr3L_21634285_21634386,RI_chr3L_21634463_21635078 chr3L + chr3L_21634296_21634386 chr3L_21634295_21634296;chr3L_21634386_21634387 chr3L_21633988_21634295;chr3L_21634387_21634462 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.45 0.00 0.00 NA 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 4.55 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 2.94 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD I_chr2R_9844856_9845327,CG13349,RI_chr2R_9846641_9846709 chr2R - chr2R_9847615_9847752;chr2R_9847615_9847823 chr2R_9847615_9847732 chr2R_9847073_9847614;chr2R_9847824_9847834 98.86 100.00 99.10 100.00 98.95 100.00 98.87 98.60 99.69 95.65 98.86 99.02 99.10 99.04 97.16 98.32 99.19 99.01 99.25 98.04 98.47 99.28 99.39 98.08 98.97 97.60 100.00 100.00 100.00 90.24 97.48 96.20 96.08 98.45 100.00 97.10 100.00 98.97 100.00 90.79 97.14 96.79 97.41 96.36 96.43 96.43 100.00 97.14 98.77 99.02 99.28 98.59 98.57 97.78 97.16 100.00 100.00 84.85 K intron_retention Nup75,I_chr2R_14058825_14059758,I_chr2R_14058954_14059942 chr2R - chr2R_14054493_14054549 chr2R_14054492_14054493;chr2R_14054549_14054550 chr2R_14053330_14054492;chr2R_14054550_14054652 0.00 0.00 0.00 6.41 0.00 3.03 2.35 0.00 1.97 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 6.25 3.70 2.16 0.00 0.00 3.77 0.00 0.00 0.00 6.52 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 8.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 K alternative_donor ATPsyn-beta chr4 + chr4_1052580_1053532 chr4_1052864_1053532 chr4_1053533_1053844;chr4_1052474_1052579 0.00 0.00 0.00 0.09 0.00 0.00 0.09 0.07 0.10 0.00 0.00 0.08 0.29 0.00 0.11 0.09 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD crol,I_chr2L_11799403_11802904 chr2L - chr2L_11800323_11802370;chr2L_11800323_11802286;chr2L_11800323_11802343 chr2L_11800323_11802904 chr2L_11800155_11800322;chr2L_11802905_11803004 7.45 6.23 7.45 8.82 3.46 4.55 2.50 4.04 2.84 14.13 2.95 8.87 4.07 3.62 6.15 3.73 3.95 4.61 3.88 8.99 4.60 34.44 10.25 9.17 9.82 6.12 8.78 25.45 12.16 10.85 5.26 8.77 20.00 3.98 7.48 11.81 8.62 9.49 6.91 11.46 18.52 5.80 5.34 4.36 12.88 19.15 7.50 30.08 6.90 7.35 8.52 7.98 6.06 11.03 5.26 6.32 2.82 14.81 K intron_retention sar1,I_chr3R_18185148_18185246 chr3R + chr3R_18185483_18185558 chr3R_18185482_18185483;chr3R_18185558_18185559 chr3R_18185247_18185482;chr3R_18185559_18186440 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 K intron_retention CG7029,I_chr3R_18617723_18618108 chr3R + chr3R_18617723_18617979 chr3R_18617722_18617723;chr3R_18617979_18617980 chr3R_18617623_18617722;chr3R_18617980_18618321 0.00 3.92 0.00 3.28 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5174,F_chr2R_14309059_14311473 chr2R + chr2R_14311992_14312111 chr2R_14311991_14311992;chr2R_14312111_14312112 chr2R_14311831_14311991;chr2R_14312112_14312171 4.08 3.23 3.15 6.19 4.48 4.17 9.09 5.61 3.62 8.33 0.00 8.70 7.53 6.49 5.41 5.13 1.82 0.00 7.32 3.61 6.12 0.00 7.04 0.00 6.67 0.00 2.38 9.30 4.08 0.00 4.59 6.38 3.23 6.54 4.65 3.33 0.00 3.39 2.61 3.30 2.08 6.85 5.26 0.00 0.00 0.00 6.41 0.00 5.67 2.56 4.69 5.00 0.00 3.39 8.82 1.49 2.78 6.25 K intron_retention sun chrX - chrX_15743050_15743168 chrX_15743049_15743050;chrX_15743168_15743169 chrX_15742919_15743049;chrX_15743169_15743365 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.27 0.00 0.00 0.00 0.00 K alternative_acceptor CG10543 chr2R + chr2R_16891767_16891831 chr2R_16891767_16891828 chr2R_16891658_16891766;chr2R_16891832_16894148 6.06 3.03 4.35 6.82 7.14 6.25 8.33 6.82 7.81 6.25 9.68 3.45 9.09 9.09 5.71 0.00 3.70 11.54 0.00 6.90 9.09 4.65 10.00 4.41 5.41 3.12 7.89 8.33 8.57 7.14 4.35 4.35 3.64 5.00 5.56 4.35 5.97 2.56 6.41 8.82 3.45 5.88 4.17 2.86 2.38 6.06 6.82 5.26 4.48 6.52 11.54 7.41 9.30 4.00 2.70 9.52 9.52 6.25 K alternative_donor CG5261,I_chr2L_7428611_7428877 chr2L + chr2L_7428611_7428877 chr2L_7428680_7428877 chr2L_7428878_7428977;chr2L_7428511_7428610 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.19 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.09 100.00 98.65 98.18 100.00 100.00 100.00 100.00 100.00 98.61 99.00 100.00 K alternative_donor CG3321,RI_chr3R_10154615_10155360 chr3R + chr3R_10152811_10152974;chr3R_10152906_10152974;chr3R_10152911_10152974 chr3R_10152850_10152974 chr3R_10152975_10153473;chr3R_10152803_10152810 91.23 86.44 93.55 87.79 92.94 97.14 80.21 89.93 94.00 90.70 92.96 91.54 92.41 92.86 91.23 93.41 93.83 90.41 92.05 93.51 92.94 84.00 88.64 95.38 96.77 89.53 81.58 82.61 77.78 81.82 91.76 92.59 87.80 94.78 85.00 84.62 89.74 94.00 93.22 76.27 84.21 95.09 93.15 84.31 94.32 84.38 90.91 87.10 94.62 91.67 88.57 89.13 84.44 80.95 94.69 93.75 93.28 82.69 K jcn_only_AA AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9003728_9004854 chrX_9003728_9004650 chrX_9003721_9003727;chrX_9004855_9004862 0.00 NA NA NA NA NA NA NA 0.00 NA NA 3.03 NA NA NA 0.00 NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K alternative_acceptor noncoding_16269,I_chr3R_8192634_8193249,GstD1 chr3R - chr3R_8194298_8194924 chr3R_8194316_8194924 chr3R_8194925_8194962;chr3R_8193539_8194297 0.65 1.03 0.48 1.28 0.00 0.56 0.40 0.00 0.74 1.39 0.74 0.65 0.00 1.14 0.83 0.00 0.79 0.00 0.00 0.44 0.64 1.62 1.61 1.89 2.35 0.49 2.86 2.11 0.94 0.00 0.00 0.72 0.70 0.66 0.00 2.17 0.57 1.03 0.00 0.35 0.00 0.29 0.00 1.09 1.33 0.65 0.00 0.67 1.03 0.79 1.15 0.00 0.94 0.00 0.00 1.31 0.00 0.37 K intron_retention CG18249 chr3R + chr3R_4045965_4046020 chr3R_4045964_4045965;chr3R_4046020_4046021 chr3R_4045863_4045964;chr3R_4046021_4047581 100.00 91.67 100.00 NA 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 NA 100.00 100.00 NA 100.00 NA 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 K intron_retention crm,I_chrX_2635555_2635621,I_chrX_2636831_2636971 chrX - chrX_2629138_2629209 chrX_2629137_2629138;chrX_2629209_2629210 chrX_2628277_2629137;chrX_2629210_2629361 1.20 0.00 0.00 0.00 0.00 0.00 4.88 1.52 2.15 0.00 0.00 3.90 0.00 0.00 0.00 4.65 0.00 0.00 2.56 6.19 0.00 2.99 2.04 1.37 0.00 4.88 7.14 2.70 7.14 1.67 2.50 0.00 0.00 1.89 0.00 1.69 3.03 0.00 1.80 3.45 5.26 0.00 0.00 4.17 0.00 2.47 1.20 0.00 0.00 0.00 3.57 0.00 3.30 0.00 3.70 0.00 3.23 0.00 K alternative_donor CG12071,RI_chr3R_26705629_26705815,RI_chr3R_26713323_26714382 chr3R - chr3R_26705629_26706484 chr3R_26705629_26705815 chr3R_26705529_26705628;chr3R_26706485_26706510 100.00 NA NA 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor RabX4 chr3R - chr3R_20653347_20653557 chr3R_20653378_20653557 chr3R_20653558_20653672;chr3R_20653054_20653346 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.56 NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2814327_2817753 chr2R_2814327_2814894;chr2R_2815657_2816013;chr2R_2816342_2816577;chr2R_2816779_2817327;chr2R_2817604_2817753 chr2R_2814895_2815656;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817328_2817603 chr2R_2814227_2814326;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 K intron_retention CG12581,I_chr3R_9380_9438 chr3R + chr3R_272_356 chr3R_271_272;chr3R_356_357 chr3R_203_271;chr3R_357_509 88.89 100.00 81.82 80.00 81.82 NA 92.31 92.31 88.89 NA NA 94.44 NA 81.82 100.00 87.50 NA 30.77 88.89 94.12 NA NA 78.57 90.00 71.43 88.89 93.75 NA NA NA 90.00 NA NA 88.89 NA NA 90.91 90.00 92.86 76.47 NA 94.44 100.00 NA NA NA NA NA 81.25 NA 75.00 NA NA NA 90.91 88.89 NA NA K cassette CG42345,I_chr2R_1311745_1327074 chr2R + chr2R_1311745_1327074 chr2R_1311745_1323156;chr2R_1323918_1327074 chr2R_1323157_1323917 chr2R_1311645_1311744;chr2R_1327075_1327174 98.57 100.00 100.00 97.86 98.51 98.33 100.00 100.00 99.44 100.00 95.12 98.68 98.39 98.57 98.82 96.26 98.48 95.24 98.84 98.45 92.45 98.57 97.50 95.89 93.33 98.53 98.96 98.18 98.44 98.78 100.00 97.14 98.78 99.28 100.00 100.00 100.00 100.00 97.56 99.05 100.00 98.62 100.00 98.13 97.22 98.15 97.96 100.00 97.55 100.00 98.95 98.44 98.68 97.14 100.00 97.87 96.30 99.29 K alternative_acceptor TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748981_19749899 chr2R_19748984_19749899 chr2R_19749900_19749968;chr2R_19748884_19748980 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA K jcn_only_AD Mbs,I_chr3L_16045251_16046108,I_chr3L_16057100_16057329 chr3L + chr3L_16064272_16070081 chr3L_16069749_16070081 chr3L_16070082_16070224 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.45 0.54 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor B52,E_chr3R_9488770_9491174 chr3R + chr3R_9491971_9492016;chr3R_9491971_9492140 chr3R_9491971_9492077 chr3R_9491806_9491970;chr3R_9492141_9492586 0.22 0.20 0.00 1.47 0.00 0.51 0.99 0.46 0.45 0.45 0.00 0.00 0.74 0.00 0.45 0.57 0.00 0.00 0.55 0.37 0.71 0.17 0.14 0.00 0.51 0.56 0.20 0.21 0.44 0.00 0.00 0.42 0.52 0.30 0.26 0.79 0.58 0.21 0.15 0.19 0.56 0.19 0.00 0.29 0.56 0.21 0.18 0.60 0.20 0.00 0.18 0.33 0.28 0.00 0.00 0.18 0.22 0.56 K jcn_only_AA I_chrX_10148341_10149525,CG34319,noncoding_22888,I_chrX_10152994_10153223 chrX - chrX_10149620_10151700 chrX_10149624_10151700 chrX_10151701_10151766;chrX_10149593_10149619 100.00 NA NA NA NA NA 100.00 NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6394546_6419543,I_chr2R_6403557_6406705,I_chr2R_6404486_6419543,R_chr2R_6408775_6419537,I_chr2R_6409616_6419543,I_chr2R_6413368_6414281,I_chr2R_6419625_6419686,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6405708_6419543 chr2R_6405707_6405708;chr2R_6419543_6419544 chr2R_6405687_6405707;chr2R_6419544_6419624 97.22 94.12 95.00 96.88 92.31 100.00 96.15 96.30 97.50 100.00 100.00 93.33 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 95.74 100.00 96.00 95.45 100.00 96.30 96.55 96.67 100.00 100.00 92.86 97.22 96.15 95.45 100.00 97.22 95.24 100.00 97.30 100.00 100.00 93.33 100.00 93.75 94.44 91.67 97.73 96.88 100.00 95.65 100.00 88.89 100.00 94.74 100.00 100.00 95.45 K intron_retention CG8026,I_chr2R_5074640_5074701 chr2R - chr2R_5074640_5074701 chr2R_5074639_5074640;chr2R_5074701_5074702 chr2R_5074540_5074639;chr2R_5074702_5074801 71.43 NA NA 87.50 NA NA NA NA 50.00 NA 77.78 50.00 NA NA NA 60.00 NA 87.50 NA 57.14 NA NA 53.85 60.00 NA NA 73.33 90.91 71.43 87.50 NA 60.00 NA 83.33 NA NA 58.33 NA 66.67 71.43 NA 66.67 NA 58.82 NA 66.67 NA NA 76.92 76.47 81.25 NA NA 70.00 NA 75.00 NA 77.78 K jcn_only_AA His2Av chr3R + chr3R_22693505_22694146 chr3R_22693505_22694077 chr3R_22693391_22693504;chr3R_22694147_22694408 100.00 100.00 100.00 100.00 100.00 100.00 99.83 100.00 99.86 100.00 100.00 99.92 100.00 100.00 99.63 100.00 100.00 100.00 100.00 99.93 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.71 99.86 99.75 100.00 99.92 99.87 100.00 100.00 100.00 100.00 100.00 99.92 100.00 99.85 100.00 100.00 100.00 100.00 99.91 100.00 99.71 100.00 100.00 99.79 100.00 100.00 100.00 100.00 100.00 99.91 K intron_retention CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8174699_8175994 chr2L_8174698_8174699;chr2L_8175994_8175995 chr2L_8174536_8174698;chr2L_8175995_8176051 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.65 0.00 1.30 0.00 0.00 0.00 0.00 1.72 0.00 0.00 1.47 2.08 NA 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 NA K jcn_only_AD CG5642,I_chr3L_12138351_12138781 chr3L - chr3L_12138351_12139055 chr3L_12138351_12138781 chr3L_12138251_12138350;chr3L_12139056_12139333 0.00 0.29 0.00 0.39 0.35 0.00 0.00 0.47 0.30 0.58 0.36 0.00 0.41 0.00 0.00 0.00 0.00 0.37 0.66 0.13 0.40 0.37 0.00 0.00 0.00 0.00 0.21 0.00 0.84 0.00 0.95 0.00 0.64 0.50 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.36 0.29 0.41 0.61 0.00 0.00 0.18 0.00 0.00 0.25 0.58 0.29 0.00 0.00 K alternative_donor ben chrX + chrX_13890789_13892127;chrX_13890791_13892127;chrX_13891016_13892127;chrX_13890793_13892127;chrX_13890762_13892127;chrX_13890990_13892127;chrX_13890831_13892127;chrX_13890768_13892127;chrX_13890648_13892127 chrX_13890795_13892127 chrX_13892128_13892800;chrX_13890644_13890647 0.00 NA NA 16.67 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 K alternative_acceptor nrv1 chr2L - chr2L_6779646_6779711 chr2L_6779652_6779711 chr2L_6779712_6779804;chr2L_6779585_6779645 99.45 99.08 100.00 99.57 99.19 99.11 98.69 100.00 99.62 100.00 100.00 100.00 98.57 100.00 100.00 100.00 100.00 100.00 100.00 99.65 97.78 99.63 99.29 100.00 100.00 99.17 99.12 99.07 99.45 99.26 99.33 99.38 99.58 99.03 100.00 99.15 99.53 97.84 99.33 100.00 99.45 100.00 100.00 99.36 98.52 99.56 99.06 99.64 99.60 99.05 98.17 97.25 99.04 100.00 99.36 100.00 99.17 99.39 K alternative_acceptor Arf79F,I_chr3L_22863166_22863946,I_chr3L_22863166_22864419,RI_chr3L_22863251_22863389,RI_chr3L_22863251_22863952,I_chr3L_22863251_22864009,I_chr3L_22863251_22864188,I_chr3L_22863251_22864501,I_chr3L_22863251_22864629,RI_chr3L_22863251_22864763,I_chr3L_22863251_22864866,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22863166_22864559 chr3L_22863251_22864559 chr3L_22864560_22864601;chr3L_22863151_22863165 98.53 98.31 99.21 98.72 97.53 98.52 98.43 98.53 98.53 96.58 98.33 99.34 99.57 98.23 98.86 97.79 99.49 97.71 98.59 99.49 98.51 98.11 96.99 98.70 99.12 98.78 98.63 98.08 97.90 96.15 96.72 99.14 98.24 98.27 99.53 98.39 96.82 97.06 99.61 97.83 99.60 99.78 99.46 98.60 99.02 98.93 99.38 98.82 98.74 97.81 98.27 97.96 98.99 99.09 98.74 99.17 97.92 97.62 K jcn_only_AD noncoding_18164,F_chr3R_17192061_17200781,RI_chr3R_17193489_17193631 chr3R + chr3R_17193416_17193631;chr3R_17193407_17193631 chr3R_17193489_17193631 chr3R_17193632_17193731;chr3R_17193389_17193406 6.53 0.00 NA 10.42 NA 9.52 5.13 12.50 8.33 NA NA 2.63 NA 15.00 9.09 2.86 NA NA 4.00 3.12 NA NA 10.00 NA NA 10.00 20.00 4.76 NA NA 3.51 NA NA 10.00 NA NA NA NA 0.00 3.03 10.00 7.50 9.09 8.00 12.50 3.70 NA 0.00 0.00 5.56 9.52 NA NA NA 9.38 3.70 4.00 0.00 K jcn_only_AD Rox8,I_chr3R_19872211_19872659,I_chr3R_19872214_19872630,I_chr3R_19872214_19872636,I_chr3R_19872214_19872838,I_chr3R_19876189_19876240 chr3R - chr3R_19872214_19873834;chr3R_19872214_19873682;chr3R_19872214_19873550 chr3R_19872214_19873540 chr3R_19872114_19872213;chr3R_19873835_19873903 64.29 NA 59.57 63.24 50.00 67.65 81.25 44.44 47.37 NA 64.29 58.49 53.12 71.79 70.37 64.29 57.14 54.17 57.78 44.83 57.58 NA 87.10 NA 64.29 70.27 87.50 NA 80.00 NA 57.14 NA 69.23 52.00 75.00 86.67 NA NA 80.77 NA NA 71.01 61.29 NA NA 58.62 NA 72.22 56.18 NA 71.43 NA 72.73 NA 45.71 NA NA 68.29 K cassette Pop2,RI_chr3L_11992097_11993849 chr3L - chr3L_11994191_11995685 chr3L_11994191_11994826;chr3L_11995097_11995685 chr3L_11994827_11995096 chr3L_11993850_11994190;chr3L_11995686_11995985 1.08 0.98 0.00 0.90 1.39 0.00 2.00 1.10 0.61 0.00 3.03 1.68 0.00 1.89 1.14 1.43 1.33 1.69 0.00 1.36 3.33 2.52 1.57 1.22 0.00 0.00 1.11 2.56 0.69 0.00 1.79 1.41 0.80 1.06 1.27 1.94 0.88 1.08 1.03 1.09 0.00 0.69 0.00 0.79 0.00 0.69 1.18 0.61 0.87 1.83 1.28 1.82 0.00 1.20 1.37 1.01 0.98 0.00 K intron_retention CG9281,I_chrX_15603016_15604180 chrX - chrX_15601098_15601161 chrX_15601097_15601098;chrX_15601161_15601162 chrX_15599839_15601097;chrX_15601162_15601698 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.92 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA HP5 chrX + chrX_11350521_11350687 chrX_11350521_11350617 chrX_11349315_11350520;chrX_11350688_11350915 16.67 27.78 3.33 51.72 NA 3.70 33.33 25.00 22.22 17.65 NA 22.41 31.82 NA 9.76 13.89 NA 18.18 4.76 23.73 NA 11.76 6.82 26.83 17.39 NA 22.58 15.62 14.29 13.89 18.92 NA 18.75 25.00 NA 21.74 4.44 17.95 14.63 14.29 35.00 16.67 14.29 10.00 NA 5.00 24.14 16.67 17.50 15.38 23.68 14.71 0.00 13.79 13.79 3.70 NA 18.18 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2390808;chrX_2390959_2391350;chrX_2391522_2395659 chrX_2387584_2387709;chrX_2388437_2388670;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2395660_2395759 1.01 1.92 1.47 0.00 0.00 0.00 0.00 0.75 1.17 0.00 0.00 3.26 0.00 1.72 1.11 0.00 1.54 0.00 1.22 0.99 0.00 0.00 1.12 0.00 2.94 1.69 1.45 0.00 2.70 1.67 1.79 0.00 1.01 0.76 0.00 3.23 1.12 0.00 1.25 1.96 0.00 1.45 1.61 2.74 0.00 0.00 NA 1.54 1.12 0.00 2.04 0.00 0.00 NA 2.02 0.00 0.00 2.04 K jcn_only_AA CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21263124_21263722 chr2L_21263124_21263647 chr2L_21262988_21263123;chr2L_21263723_21263786 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 K alternative_acceptor CG7611,I_chr3L_21518817_21520283 chr3L + chr3L_21518817_21519083 chr3L_21518817_21519068 chr3L_21518717_21518816;chr3L_21519084_21520036 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Tom20,I_chr3L_19994387_19994460,RI_chr3L_19994894_19994949,RI_chr3L_19995983_19996407 chr3L + chr3L_19994537_19994949 chr3L_19994536_19994537;chr3L_19994949_19994950 chr3L_19994461_19994536;chr3L_19994950_19995049 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 1.16 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.73 0.74 0.00 0.00 1.94 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.85 0.00 0.00 K alternative_donor CG10277,I_chr3R_2208983_2210253,I_chr3R_2211939_2212057 chr3R + chr3R_2209244_2210702;chr3R_2208983_2210702 chr3R_2209240_2210702 chr3R_2210703_2210980;chr3R_2208883_2208982 2.44 10.00 1.33 4.00 2.50 1.56 4.65 2.37 2.76 1.18 1.56 4.14 2.99 1.43 2.63 1.64 2.17 3.85 2.56 2.49 3.08 5.06 1.74 3.74 3.23 3.61 3.88 1.47 8.82 0.87 2.04 0.00 1.91 3.96 3.00 3.36 1.95 14.29 1.32 2.34 1.74 2.40 3.33 4.04 4.26 2.24 1.49 2.44 3.94 1.96 2.08 2.33 2.90 0.00 2.56 0.00 0.00 1.00 K alternative_donor Zyx102EF,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1078199_1078263 chr4_1078199_1078258 chr4_1078191_1078198;chr4_1078264_1078326 92.31 93.33 93.33 93.10 88.89 80.00 89.29 92.31 92.31 NA 88.89 85.71 90.91 84.62 93.75 96.00 100.00 92.31 84.21 86.67 100.00 NA 80.00 92.86 66.67 92.86 94.44 NA NA 100.00 88.46 92.31 NA 89.66 90.91 100.00 NA NA 100.00 90.91 91.67 82.35 88.89 86.67 92.31 92.86 90.32 NA 91.89 95.24 94.74 100.00 92.00 94.74 95.65 87.50 90.32 100.00 N alternative_acceptor CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261460_263113;chr4_261460_263086 chr4_261460_261555 chr4_261360_261459;chr4_263114_263305 20.00 18.18 14.29 68.42 12.50 9.09 43.33 29.03 23.26 NA 20.00 21.74 30.77 25.00 10.00 25.00 25.00 18.18 18.75 14.81 14.29 20.00 28.57 28.57 66.67 28.57 33.33 NA 25.00 33.33 5.88 16.67 16.67 25.93 20.00 50.00 20.00 20.00 NA 16.67 33.33 18.52 13.33 20.00 20.00 16.67 11.11 25.00 23.33 14.29 22.22 25.00 25.00 16.67 12.50 NA 14.29 14.29 K intron_retention CG5916 chr3R + chr3R_11973086_11973165 chr3R_11973085_11973086;chr3R_11973165_11973166 chr3R_11972903_11973085;chr3R_11973166_11973392 0.00 0.00 0.00 4.17 0.00 9.52 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 7.14 NA 0.00 10.00 18.18 0.00 10.53 0.00 0.00 4.76 0.00 3.85 12.50 4.26 0.00 0.00 0.00 NA 6.52 0.00 0.00 0.00 0.00 0.00 9.52 0.00 0.00 3.57 NA 0.00 NA 0.00 10.00 0.00 10.53 K intron_retention spz chr3R - chr3R_22892607_22894865 chr3R_22892606_22892607;chr3R_22894865_22894866 chr3R_22892566_22892606;chr3R_22894866_22895053 6.98 4.44 12.50 21.57 0.00 3.03 15.52 8.82 9.20 5.88 8.70 4.90 25.93 12.00 7.27 12.50 18.18 15.00 6.98 11.43 6.90 6.06 4.88 11.76 10.71 10.53 5.56 12.50 3.70 3.45 3.57 5.41 2.00 14.58 0.00 25.93 4.55 9.09 2.70 6.02 13.95 6.98 11.76 4.55 2.60 5.88 7.14 5.26 8.22 10.00 8.33 5.88 4.44 9.09 9.52 0.00 6.52 0.00 K intron_retention RhoGAP68F,RI_chr3L_12133229_12134100 chr3L + chr3L_12133229_12134351 chr3L_12133228_12133229;chr3L_12134351_12134352 chr3L_12133129_12133228;chr3L_12134352_12134477 0.00 0.00 0.00 4.17 2.00 0.00 7.55 0.00 1.98 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.21 0.00 0.00 0.00 4.44 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.43 2.63 0.00 3.17 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA spen,I_chr2L_187184_187481,I_chr2L_200676_200752 chr2L + chr2L_200676_200752 chr2L_200676_200741 chr2L_200576_200675;chr2L_200753_200852 100.00 100.00 99.16 100.00 100.00 100.00 100.00 100.00 99.60 100.00 97.62 99.61 100.00 99.02 100.00 100.00 100.00 98.96 99.03 100.00 100.00 100.00 99.39 100.00 100.00 100.00 100.00 98.86 99.36 100.00 100.00 100.00 100.00 99.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 98.15 100.00 100.00 99.25 100.00 100.00 100.00 K intron_retention Klp31E,RfC3 chr2L + chr2L_10419303_10419358 chr2L_10419302_10419303;chr2L_10419358_10419359 chr2L_10419208_10419302;chr2L_10419359_10419423 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 2.56 NA NA 2.63 NA 0.00 0.00 0.00 0.00 NA NA 3.92 0.00 NA 4.76 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA 3.85 NA NA NA NA 0.00 0.00 NA 2.70 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 11.11 NA 0.00 0.00 0.00 0.00 NA 4.76 K intron_retention rec,RI_chr3R_11650593_11650818 chr3R - chr3R_11650593_11656075 chr3R_11650592_11650593;chr3R_11656075_11656076 chr3R_11650493_11650592;chr3R_11656076_11658329 0.00 NA NA NA NA NA NA NA 0.00 NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA K intron_retention aft,CG5033 chr2R + chr2R_13674246_13674298 chr2R_13674245_13674246;chr2R_13674298_13674299 chr2R_13673805_13674245;chr2R_13674299_13676072 0.00 NA 0.00 0.00 0.00 NA 3.45 5.71 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 3.33 NA NA NA 5.56 NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 5.56 NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K alternative_donor MB8.chr3R.pasa.66,CG1091,I_chr3R_2910490_2910662,RI_chr3R_2910490_2910686,RI_chr3R_2911041_2911135,RI_chr3R_2946518_2946663 chr3R - chr3R_2910490_2910686;chr3R_2910490_2910662 chr3R_2910490_2910646 chr3R_2910390_2910489;chr3R_2910687_2910762 95.65 96.00 96.30 92.31 86.96 96.43 90.62 93.02 93.62 100.00 96.00 100.00 95.65 94.44 96.15 97.30 95.65 95.83 93.33 93.67 95.45 93.75 97.14 94.74 100.00 100.00 88.64 93.75 96.15 96.97 83.93 95.83 93.18 94.29 100.00 95.24 95.00 96.30 93.18 82.00 95.00 98.15 94.44 97.06 96.88 96.15 96.77 97.06 93.02 85.71 92.50 82.61 95.24 96.30 100.00 96.55 97.37 95.35 K intron_retention CG5746 chr3R - chr3R_20172709_20172802 chr3R_20172708_20172709;chr3R_20172802_20172803 chr3R_20172539_20172708;chr3R_20172803_20173012 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 1.22 4.11 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.70 0.45 0.00 0.00 0.00 0.00 1.05 0.00 0.00 2.50 0.00 0.00 0.00 2.00 0.00 0.84 1.32 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.21 1.35 0.00 0.68 0.00 0.00 0.00 0.00 0.00 1.44 0.00 K intron_retention Rab11,I_chr3R_16937578_16940474,RE_chr3R_16939259_16939667 chr3R + chr3R_16939790_16940474 chr3R_16939789_16939790;chr3R_16940474_16940475 chr3R_16939668_16939789;chr3R_16940475_16940574 0.10 0.00 0.36 0.58 0.00 0.00 0.18 0.28 0.40 0.00 0.22 0.12 0.00 0.46 0.00 0.20 0.00 2.67 0.00 0.00 0.42 0.19 0.46 0.00 0.00 1.12 0.00 2.03 0.63 0.00 0.43 0.00 0.39 0.30 0.00 0.52 0.38 0.21 0.31 0.32 0.26 0.10 0.28 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 K intron_retention Hydr1 chr2R + chr2R_5020273_5020369 chr2R_5020272_5020273;chr2R_5020369_5020370 chr2R_5020204_5020272;chr2R_5020370_5020491 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA 90.00 100.00 NA NA 100.00 NA NA 100.00 100.00 93.75 NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA 90.00 NA NA 88.89 NA 100.00 90.00 NA 88.89 NA NA NA NA NA NA 88.89 NA NA NA NA NA 90.00 NA NA NA K intron_retention ens,I_chr3L_4130719_4131120 chr3L - chr3L_4129789_4131120 chr3L_4129788_4129789;chr3L_4131120_4131121 chr3L_4129651_4129788;chr3L_4131121_4131220 81.82 NA NA 77.78 NA NA NA 80.00 83.33 NA 77.78 95.45 NA NA NA NA NA NA NA 70.00 NA NA NA NA NA NA NA NA 66.67 NA NA NA 90.91 88.89 NA 84.62 81.82 NA 80.00 91.67 NA 66.67 NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA K intron_retention I_chr3R_8822346_8822403,CG7518 chr3R + chr3R_8828286_8828350 chr3R_8828285_8828286;chr3R_8828350_8828351 chr3R_8828274_8828285;chr3R_8828351_8828431 49.16 NA NA NA NA NA NA NA 77.78 NA NA 58.33 NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA sgg,I_chrX_2528059_2528637,I_chrX_2528131_2535622,RI_chrX_2528212_2535830,I_chrX_2528367_2535622,I_chrX_2528472_2535622,I_chrX_2536127_2563666,I_chrX_2563342_2563666,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2528059_2528859;chrX_2528059_2535830;chrX_2528059_2535622 chrX_2528059_2528868 chrX_2528052_2528058 0.00 13.64 0.00 2.17 NA NA 2.04 0.00 1.30 NA NA 0.00 3.45 0.00 3.70 1.96 NA 0.00 0.00 2.08 NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 2.94 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K alternative_acceptor Pdp1,RI_chr3L_7809841_7810536,I_chr3L_7813130_7818683,I_chr3L_7831960_7846282 chr3L - chr3L_7809841_7810536;chr3L_7809826_7810536 chr3L_7809712_7810536 chr3L_7810537_7810636;chr3L_7809584_7809711 10.00 9.26 6.98 10.42 9.30 15.22 8.51 9.52 7.76 8.70 20.45 14.81 3.85 10.26 4.17 10.26 4.17 13.46 2.44 10.00 10.00 6.67 13.92 10.45 8.70 11.11 18.06 7.69 12.50 12.73 6.12 15.38 12.86 9.46 19.57 6.38 10.71 11.67 9.33 12.00 3.33 7.34 9.09 7.14 13.46 9.76 17.02 5.00 10.59 5.36 9.21 12.50 29.27 16.28 8.62 15.22 17.31 10.26 K intron_retention E2f,I_chr3R_17447419_17447508,mir-11,CG6353 chr3R - chr3R_17447419_17448533 chr3R_17447418_17447419;chr3R_17448533_17448534 chr3R_17447319_17447418;chr3R_17448534_17449373 0.61 0.32 1.30 0.92 0.00 0.97 0.33 0.77 0.59 0.00 0.60 0.78 1.12 1.01 1.20 0.94 0.00 0.00 1.13 0.34 0.00 1.32 1.19 0.63 0.71 0.56 0.52 0.60 0.44 0.77 0.94 0.00 1.05 0.00 0.36 0.76 0.41 0.65 0.34 0.85 0.87 0.48 0.00 0.91 0.00 0.68 1.12 0.93 1.04 0.37 0.71 0.00 0.00 0.00 0.82 0.61 0.00 0.00 N cassette CG1674,I_chr4_253475_257020,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_254972_260939;chr4_254972_257894 chr4_254972_257020;chr4_257102_257894,chr4_257102_260939 chr4_257021_257101 chr4_254893_254971;chr4_260940_261024 87.50 92.31 92.86 55.56 87.50 90.91 75.86 83.72 85.19 NA NA 85.71 78.95 85.71 100.00 87.88 94.44 72.73 95.45 91.67 77.78 60.00 91.67 71.43 75.00 85.71 100.00 NA NA 90.00 91.67 NA 80.00 89.47 90.91 NA 87.50 83.33 100.00 92.86 NA 89.66 92.86 91.67 NA 100.00 80.00 83.33 83.72 87.50 94.74 66.67 NA 85.71 77.78 NA 80.00 92.31 K cassette Stlk,noncoding_4394 chr2R + chr2R_449183_451938;chr2R_448295_451938 chr2R_449183_450349,chr2R_448295_450349;chr2R_450587_451938 chr2R_450350_450586 chr2R_448219_448294;chr2R_451939_452065 100.00 100.00 100.00 100.00 100.00 100.00 97.62 97.73 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor scrib,I_chr3R_22362324_22363015,I_chr3R_22381374_22399575,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22362244_22363092;chr3R_22362120_22363092;chr3R_22362254_22363092;chr3R_22362224_22363092;chr3R_22362324_22363092;chr3R_22362142_22363092 chr3R_22362315_22363092 chr3R_22363093_22363115;chr3R_22362112_22362119 2.38 0.00 1.92 1.35 5.00 0.00 6.15 1.41 0.91 0.00 2.50 1.39 2.70 2.38 2.38 1.59 0.00 2.70 2.38 2.17 2.33 0.00 1.96 2.78 3.33 2.94 3.12 0.00 3.77 1.27 2.38 0.00 0.76 2.82 2.38 3.03 2.63 0.00 2.56 1.85 2.44 3.80 2.94 2.63 2.78 2.44 4.55 1.10 4.35 0.00 2.17 0.00 8.33 0.00 0.00 0.00 6.25 1.49 K jcn_only_AD CG9875,CG34423,CG34424 chr2R + chr2R_19245870_19246355 chr2R_19246291_19246355 chr2R_19246356_19246419;chr2R_19245763_19245869 100.00 95.65 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 100.00 NA 96.00 95.83 NA NA NA 95.24 NA NA 100.00 NA NA 100.00 NA NA 100.00 NA NA 100.00 NA 97.73 NA NA 100.00 95.83 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA K alternative_donor CG32016,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_978516_978612;chr4_978516_978631 chr4_978516_978914 chr4_978478_978515;chr4_978915_978920 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AD 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5987603_5991760,I_chr2R_5988662_5991760,I_chr2R_5988666_5991760,I_chr2R_5988919_5991760,I_chr2R_5988931_5991760,I_chr2R_5990647_5991760,I_chr2R_5991249_5991760,I_chr2R_5991689_5991760,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5988603_5991760 chr2R_5988683_5991760 chr2R_5991761_5991860;chr2R_5988596_5988602 1.35 2.88 1.79 1.99 0.00 2.21 1.83 0.79 0.93 2.42 0.68 0.91 1.88 1.53 0.50 1.07 0.00 1.60 0.63 2.07 1.36 2.13 1.34 1.22 4.31 3.29 2.86 1.75 8.76 2.21 0.56 0.65 0.76 1.23 1.18 5.94 1.66 0.99 0.78 0.00 0.98 0.68 2.07 1.35 0.54 1.63 0.68 1.67 1.53 1.15 3.16 0.00 3.03 2.56 1.16 0.69 1.20 2.50 K alternative_donor vkg,I_chr2L_5027222_5027297,I_chr2L_5027222_5028118 chr2L - chr2L_5027222_5028118;chr2L_5027222_5027351 chr2L_5027222_5027297 chr2L_5027122_5027221;chr2L_5028119_5028218 14.29 11.11 14.29 20.00 4.55 11.76 19.23 25.64 11.29 14.29 11.54 24.39 21.28 18.52 27.27 11.36 8.33 20.00 20.00 18.31 13.33 16.67 12.50 15.38 16.67 21.43 14.29 0.00 11.11 0.00 13.33 18.18 14.29 23.08 28.57 33.33 6.06 0.00 10.00 16.67 28.57 15.69 25.00 5.00 33.33 20.00 0.00 20.00 21.54 7.69 7.69 14.29 14.29 25.00 14.29 20.00 7.69 10.00 K intron_retention CG18659,E_chr2R_5011363_5019110,RI_chr2R_5013572_5014531,I_chr2R_5016147_5016997 chr2R - chr2R_5011651_5013055 chr2R_5011650_5011651;chr2R_5013055_5013056 chr2R_5011194_5011650;chr2R_5013056_5013571 42.27 47.06 53.85 52.63 60.00 64.29 59.09 50.00 57.58 41.67 46.15 40.00 50.00 33.33 58.82 NA 50.00 46.67 63.64 42.11 46.15 32.32 46.88 39.13 66.67 NA 21.05 34.09 18.18 46.15 63.64 NA 30.77 69.57 42.86 60.00 35.42 22.22 30.00 42.42 43.75 47.06 NA 29.17 33.33 35.00 33.33 27.27 34.62 41.18 29.41 NA 25.00 41.18 50.00 33.33 30.00 37.50 K intron_retention CG3226 chrX - chrX_6547764_6547940 chrX_6547763_6547764;chrX_6547940_6547941 chrX_6547129_6547763;chrX_6547941_6548113 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.43 0.56 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.64 0.00 0.00 0.00 1.24 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.60 0.00 0.00 0.00 0.68 0.00 0.00 0.37 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG6006 chr3R + chr3R_11984096_11984579;chr3R_11984036_11984579;chr3R_11984029_11984579;chr3R_11984018_11984579 chr3R_11983962_11984579 chr3R_11984580_11984637;chr3R_11983945_11983961 5.01 12.50 6.25 0.00 NA 10.00 8.33 7.69 4.76 NA 0.00 0.00 0.00 0.00 6.67 0.00 11.11 0.00 9.09 0.00 28.57 0.00 4.76 6.25 0.00 0.00 5.88 0.00 0.00 14.29 5.56 16.67 0.00 0.00 6.25 6.25 0.00 9.09 0.00 5.26 0.00 4.35 0.00 0.00 NA 8.33 11.11 10.00 3.45 16.67 0.00 8.33 7.14 0.00 15.38 12.50 0.00 25.00 K alternative_acceptor gwl chr3R + chr3R_14572444_14572973 chr3R_14572444_14572958 chr3R_14572389_14572443;chr3R_14572974_14573114 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 94.74 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA NA 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 NA 100.00 NA 100.00 94.12 NA 100.00 100.00 NA NA 100.00 NA NA NA K cassette CG1674,I_chr4_253475_257020,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_253475_257020 chr4_253475_254890;chr4_254972_257020 chr4_254891_254971 chr4_253439_253474;chr4_257021_257101 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 96.88 NA NA 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 100.00 NA 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 K intron_retention Syx4,I_chrX_2635555_2635621,I_chrX_2636831_2636971 chrX - chrX_2633579_2635455 chrX_2633578_2633579;chrX_2635455_2635456 chrX_2633330_2633578;chrX_2635456_2635529 0.00 3.92 0.00 0.00 0.00 0.00 3.57 4.40 1.06 NA 0.00 1.23 0.00 2.27 1.72 0.00 2.38 0.00 1.67 2.00 2.44 0.00 0.00 2.56 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 2.22 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr2R_19695638_19696332,Nxt1,RI_chr2R_19699261_19699317,CG4797 chr2R - chr2R_19699405_19699461 chr2R_19699404_19699405;chr2R_19699461_19699462 chr2R_19699318_19699404;chr2R_19699462_19699529 0.00 0.00 0.00 2.15 3.92 0.00 5.00 2.33 2.70 0.00 0.00 7.14 0.00 0.00 2.56 0.00 0.00 3.03 4.55 1.98 0.00 0.00 0.00 0.00 NA 0.00 NA 4.44 31.58 6.90 0.00 1.27 2.33 0.00 0.00 18.18 0.00 0.00 0.00 0.00 16.36 0.00 0.00 1.05 2.04 8.33 0.00 0.00 3.61 7.41 NA NA 0.00 NA 0.00 NA 4.35 3.60 K intron_retention egg,Lcp9,I_chr2R_20674654_20674897 chr2R - chr2R_20664099_20664169 chr2R_20664098_20664099;chr2R_20664169_20664170 chr2R_20663382_20664098;chr2R_20664170_20664931 0.00 0.00 0.00 6.78 0.00 0.00 0.00 1.82 0.00 0.00 0.00 2.30 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 3.39 1.41 1.54 0.00 0.00 0.00 2.94 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 1.12 0.00 0.00 5.94 2.04 1.12 4.17 1.30 1.37 0.00 0.00 0.00 0.00 0.00 3.85 0.00 1.06 K intron_retention CG12428,I_chr3R_23531574_23532266 chr3R - chr3R_23530052_23530111 chr3R_23530051_23530052;chr3R_23530111_23530112 chr3R_23529635_23530051;chr3R_23530112_23530242 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 6.67 4.35 9.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Spn,I_chr3L_2511764_2512148 chr3L - chr3L_2508866_2509363 chr3L_2508908_2509363 chr3L_2509364_2509500;chr3L_2508639_2508865 30.24 26.79 26.47 54.55 40.74 36.36 33.33 32.50 26.47 20.00 NA 26.23 29.17 23.33 38.71 NA NA 50.00 45.45 22.22 NA 67.74 28.17 32.84 4.65 NA 39.47 68.75 40.38 24.68 19.05 18.92 33.33 29.27 28.12 31.11 30.49 36.54 34.62 38.40 27.03 23.17 20.00 36.36 29.21 38.71 40.91 39.82 23.21 25.45 27.45 32.35 17.78 37.25 30.00 25.53 48.28 25.00 K alternative_donor CG9795,I_chr3R_151216_151418 chr3R + chr3R_151216_151418;chr3R_151180_151418;chr3R_151212_151418 chr3R_151184_151418 chr3R_151419_151518;chr3R_151116_151179 0.00 0.00 16.67 4.76 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.33 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG1890,CG1896,I_chr3R_27573809_27574675 chr3R + chr3R_27569560_27569621 chr3R_27569560_27569614 chr3R_27569187_27569559;chr3R_27569622_27569990 100.00 99.40 100.00 100.00 100.00 100.00 99.43 100.00 100.00 100.00 100.00 99.66 100.00 100.00 100.00 100.00 100.00 100.00 99.22 100.00 100.00 100.00 100.00 100.00 99.15 100.00 100.00 100.00 100.00 99.27 100.00 99.57 99.66 100.00 99.35 100.00 100.00 99.30 100.00 100.00 100.00 100.00 100.00 100.00 99.65 99.72 100.00 100.00 100.00 100.00 100.00 100.00 99.49 100.00 100.00 100.00 100.00 100.00 K intron_retention kat80,I_chrX_16162233_16162306,I_chrX_16168725_16169287 chrX - chrX_16162037_16162104 chrX_16162036_16162037;chrX_16162104_16162105 chrX_16161947_16162036;chrX_16162105_16162235 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 2.13 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 5.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.53 1.23 0.00 0.00 0.00 6.25 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 K intron_retention I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10065709_10065776 chr2R_10065708_10065709;chr2R_10065776_10065777 chr2R_10065603_10065708;chr2R_10065777_10066101 0.00 5.41 0.00 2.13 0.00 0.00 0.00 3.77 1.59 0.00 0.00 4.62 3.85 3.23 0.00 2.38 0.00 0.00 5.71 1.67 0.00 6.67 4.62 5.08 0.00 6.45 12.07 0.00 7.69 7.84 0.00 0.00 0.00 0.00 6.67 9.30 4.48 0.00 0.00 2.33 8.70 2.50 2.70 0.00 0.00 4.65 0.00 3.57 0.00 0.00 4.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA MSBP,I_chrX_15783766_15784027,RI_chrX_15783766_15784064,I_chrX_15783766_15785978 chrX - chrX_15783766_15784064 chrX_15783998_15784064 chrX_15784065_15784071 96.36 100.00 100.00 98.67 93.48 98.18 98.28 97.12 96.52 95.24 100.00 99.06 97.65 97.18 89.36 94.90 98.61 93.65 93.85 95.38 96.36 79.31 90.62 100.00 NA NA NA NA NA 95.00 100.00 90.91 93.48 98.28 NA NA 97.37 NA 93.55 NA NA 94.19 89.09 100.00 96.30 90.00 96.77 91.67 96.89 93.10 86.96 96.55 NA NA 94.52 80.00 100.00 100.00 K intron_retention CG6656,RI_chr3R_17702199_17702274,CG33092 chr3R + chr3R_17702199_17702274 chr3R_17702198_17702199;chr3R_17702274_17702275 chr3R_17702099_17702198;chr3R_17702275_17702285 88.89 NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA NA NA NA NA 81.82 NA NA 90.00 NA NA NA NA NA NA NA 70.59 NA NA NA NA NA 80.00 NA NA 90.00 NA 100.00 NA NA NA NA NA 88.89 NA NA 75.00 NA NA NA NA NA NA NA K intron_retention CG31012,I_chr3R_26643930_26646602 chr3R + chr3R_26642847_26642919 chr3R_26642846_26642847;chr3R_26642919_26642920 chr3R_26642597_26642846;chr3R_26642920_26643031 0.00 0.42 0.00 1.49 1.61 0.00 0.00 1.20 0.82 0.00 1.64 1.54 0.00 0.00 1.69 0.76 0.00 0.97 0.00 0.98 0.00 1.83 0.52 0.00 0.00 0.00 0.36 0.00 1.76 0.00 0.87 0.00 0.40 1.49 0.00 0.84 0.00 0.00 0.45 0.57 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.79 1.50 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 1.01 K alternative_donor ken chr2R + chr2R_19757854_19762447 chr2R_19758404_19762447 chr2R_19762448_19762617;chr2R_19757795_19757853 97.50 97.50 97.62 96.59 91.18 97.22 98.68 98.84 97.20 91.67 97.14 95.00 97.87 97.83 95.92 97.62 97.50 97.14 100.00 96.88 100.00 93.65 98.55 97.87 97.14 100.00 94.55 96.88 94.44 97.67 98.11 93.55 96.83 97.70 97.73 97.78 95.56 97.37 97.22 98.51 100.00 95.51 97.62 100.00 93.33 97.92 96.77 97.40 99.00 95.35 98.41 97.73 100.00 100.00 100.00 97.44 96.67 96.43 K alternative_acceptor smid,I_chr3L_7375166_7375310,I_chr3L_7375435_7375508 chr3L + chr3L_7375832_7375887 chr3L_7375832_7375884 chr3L_7375509_7375831;chr3L_7375888_7375935 60.94 64.29 62.16 71.43 63.33 67.86 59.57 66.67 65.00 50.00 54.55 65.38 60.61 64.00 53.33 57.45 66.67 65.38 58.54 66.67 54.29 51.06 59.46 61.76 50.00 65.52 62.50 72.73 57.14 65.22 78.26 57.89 56.20 73.91 66.67 51.43 57.78 57.58 68.75 57.14 66.67 60.94 65.62 51.06 46.67 55.00 54.17 53.33 70.59 57.14 57.50 62.07 53.33 71.43 60.98 70.59 58.33 50.79 K alternative_donor CG5482,I_chr2R_14519136_14519239 chr2R - chr2R_14519136_14519254;chr2R_14519136_14519239 chr2R_14519136_14519367 chr2R_14519036_14519135;chr2R_14519368_14519403 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.85 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 NA 9.09 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG42507,Trl,I_chr3L_14745733_14745798,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14744876_14746433;chr3L_14744876_14745798 chr3L_14744876_14746310 chr3L_14744367_14744875;chr3L_14746434_14746571 33.89 26.83 41.51 32.84 40.00 35.56 35.14 40.91 39.51 31.11 34.29 47.06 NA 23.53 48.72 48.00 39.29 53.85 35.00 45.90 34.29 52.50 28.04 11.32 22.50 24.39 29.23 27.27 36.96 29.27 34.88 43.40 45.89 20.90 30.00 33.85 31.40 41.79 45.54 30.17 46.81 31.96 37.04 19.05 38.10 55.71 32.76 33.94 26.97 26.53 23.88 31.25 30.00 25.42 28.30 28.81 33.93 31.93 K jcn_only_AA CG7611,I_chr3L_21518817_21520283 chr3L + chr3L_21518817_21519083 chr3L_21518817_21519068 chr3L_21518717_21518816;chr3L_21519084_21520036 0.00 1.75 0.00 0.00 0.00 1.82 1.45 0.00 0.00 0.00 0.00 0.00 1.96 0.00 1.85 1.23 0.00 0.00 0.00 0.00 0.00 0.00 1.25 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 2.56 0.00 0.00 2.38 1.45 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 K jcn_only_AD I_chr2L_11009331_11009442,dUTPase,I_chr2L_11011380_11011453 chr2L + chr2L_11011419_11011471;chr2L_11011380_11011471 chr2L_11011394_11011471 chr2L_11011472_11011553;chr2L_11011335_11011379 0.00 0.00 0.70 0.00 0.65 0.00 0.00 0.51 0.85 0.00 0.00 0.87 0.00 0.00 1.23 0.00 0.00 0.72 0.00 1.39 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 1.47 2.50 0.61 0.00 0.00 0.00 0.00 0.00 0.91 NA 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.39 0.41 0.00 0.00 2.48 0.00 0.67 0.78 0.90 1.61 K cassette Dyrk3,I_chr4_1233845_1234170 chr4 - chr4_1233845_1234223;chr4_1233845_1234374 chr4_1233845_1234031;chr4_1234147_1234223,chr4_1234147_1234374 chr4_1234032_1234146 chr4_1233745_1233844;chr4_1234375_1234398 75.00 NA NA 87.50 NA NA 50.00 NA 90.00 NA NA 60.00 NA NA NA 75.00 NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA K cassette CG32016,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_977663_977720,I_chr4_978690_978939 chr4 - chr4_975677_978914 chr4_975677_977170;chr4_978340_978914 chr4_977171_978339 chr4_975550_975676;chr4_978915_978920 100.00 100.00 98.55 99.12 97.67 100.00 99.14 97.89 98.70 100.00 100.00 98.35 98.48 100.00 100.00 99.22 98.53 100.00 98.89 97.60 97.78 97.56 98.70 98.25 100.00 100.00 100.00 100.00 97.92 98.00 98.92 100.00 100.00 99.29 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.24 100.00 98.41 100.00 100.00 100.00 100.00 99.30 97.67 100.00 100.00 100.00 100.00 98.89 100.00 100.00 100.00 K jcn_only_AD CG7224 chr2L + chr2L_7999168_7999248;chr2L_7999170_7999248;chr2L_7999174_7999248 chr2L_7999176_7999248 chr2L_7999249_7999714;chr2L_7998934_7999167 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 4.08 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 2.00 0.00 0.00 1.79 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 1.08 K cassette Jupiter,I_chr3R_7417030_7419354,I_chr3R_7418347_7445425,RE_chr3R_7419487_7429863,RI_chr3R_7442793_7445425 chr3R - chr3R_7418347_7445425 chr3R_7418347_7419354;chr3R_7419489_7445425 chr3R_7419355_7419488 chr3R_7418247_7418346;chr3R_7445426_7445525 99.87 99.68 100.00 99.87 100.00 100.00 99.19 99.84 100.00 99.76 100.00 100.00 100.00 100.00 99.82 100.00 99.74 100.00 100.00 100.00 100.00 99.45 100.00 99.74 98.83 99.58 99.68 98.92 99.69 100.00 100.00 100.00 99.70 100.00 99.83 99.83 99.86 99.72 99.86 99.72 99.87 99.90 100.00 100.00 99.82 99.81 99.85 99.88 99.88 99.88 99.86 99.77 99.80 99.81 99.82 100.00 99.87 99.89 K alternative_donor Roughened,I_chr3L_1861677_1861777,I_chr3L_1861677_1861929,I_chr3L_1861677_1862177 chr3L - chr3L_1861677_1861777;chr3L_1861677_1862177 chr3L_1861677_1862060 chr3L_1861577_1861676;chr3L_1862178_1862277 96.60 96.67 96.20 89.91 97.08 96.67 93.88 96.19 97.06 96.55 96.69 96.96 96.97 97.92 96.76 96.34 96.24 95.78 96.18 97.59 98.06 76.02 96.84 96.83 93.02 93.79 90.85 88.10 92.86 98.67 96.20 97.30 97.05 96.19 95.24 97.06 96.31 97.45 96.10 94.31 92.86 95.90 97.24 95.27 96.32 97.52 97.52 97.33 96.93 96.36 95.85 96.67 96.60 97.37 96.45 98.73 97.96 98.43 K alternative_donor Aldh-III,RE_chr2R_3355332_3355720,I_chr2R_3356541_3356614,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3354822_3354987 chr2R_3354822_3354978 chr2R_3354726_3354821;chr2R_3354988_3355138 12.86 11.67 12.24 15.96 10.11 13.04 14.10 13.86 15.58 14.89 8.89 14.05 16.28 13.41 13.08 10.08 15.31 15.52 13.33 12.80 12.86 21.95 11.52 10.22 12.09 22.06 11.84 17.78 16.95 12.09 13.54 9.64 13.58 13.33 11.21 24.72 10.78 9.21 12.03 11.11 9.52 12.82 12.99 12.50 15.60 11.60 9.05 17.74 10.20 11.46 11.63 13.13 15.15 9.09 15.31 12.17 11.33 14.49 K intron_retention CG32537,CG32536 chrX - chrX_19169373_19169432 chrX_19169372_19169373;chrX_19169432_19169433 chrX_19169037_19169372;chrX_19169433_19169561 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 5.56 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.78 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 K intron_retention CG5594,CG2812 chr2R + chr2R_19810553_19811524 chr2R_19810552_19810553;chr2R_19811524_19811525 chr2R_19810445_19810552;chr2R_19811525_19811617 0.00 0.00 0.00 0.00 0.00 0.00 1.46 5.06 0.00 0.00 0.00 1.06 2.94 1.69 0.00 1.96 0.00 0.00 0.00 0.97 0.00 0.00 2.67 0.00 2.13 4.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG30423 chr2R - chr2R_20762796_20762860 chr2R_20762795_20762796;chr2R_20762860_20762861 chr2R_20762597_20762795;chr2R_20762861_20763116 0.00 0.00 0.73 0.19 0.00 0.00 0.00 0.47 0.51 1.20 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.41 0.71 0.00 0.00 1.04 0.00 1.88 0.00 1.85 2.86 7.53 0.41 0.00 0.00 0.54 0.00 0.48 1.81 0.89 0.00 0.00 0.00 1.33 0.00 0.00 0.30 0.00 0.00 0.29 0.83 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ana1 chr3R + chr3R_20360832_20360897 chr3R_20360831_20360832;chr3R_20360897_20360898 chr3R_20360766_20360831;chr3R_20360898_20362117 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 96.15 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG17660 chr2L - chr2L_1708403_1708461 chr2L_1708402_1708403;chr2L_1708461_1708462 chr2L_1708282_1708402;chr2L_1708462_1708677 0.00 0.00 0.00 1.00 0.00 2.15 0.65 0.58 1.23 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.69 0.00 0.00 0.88 0.56 2.74 0.00 0.00 1.68 0.00 0.00 1.31 0.98 0.82 0.00 1.12 0.00 0.00 1.12 1.17 0.00 0.00 0.71 0.00 0.00 0.77 2.29 0.00 0.00 0.00 0.00 0.00 0.68 0.00 2.40 0.00 K alternative_donor CG15321,I_chrX_9578185_9579504,I_chrX_9578185_9579582,I_chrX_9578185_9580671,RI_chrX_9578185_9581011 chrX - chrX_9578185_9579504;chrX_9578185_9579535 chrX_9578185_9579582 chrX_9578085_9578184;chrX_9579583_9579597 7.42 NA 0.00 7.69 NA NA 11.11 12.50 14.29 NA NA 0.00 11.11 0.00 0.00 6.25 NA NA 0.00 8.33 NA NA 14.29 NA NA NA NA NA 12.50 14.29 10.00 NA 0.00 9.09 NA NA NA NA NA 6.25 NA 7.14 10.00 0.00 NA 0.00 NA 19.35 6.25 NA 12.50 NA NA NA 0.00 NA NA 0.00 K intron_retention CG42507,Trl,I_chr3L_14745733_14745798,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14744876_14746433 chr3L_14744875_14744876;chr3L_14746433_14746434 chr3L_14744367_14744875;chr3L_14746434_14746571 65.96 65.52 67.27 63.29 60.98 61.70 68.09 68.35 67.03 59.52 64.44 67.12 85.37 60.00 76.79 80.39 68.57 81.82 72.00 60.55 65.96 84.83 51.75 57.53 59.26 67.80 56.52 70.69 74.36 65.22 70.91 81.31 72.59 62.11 55.56 65.52 62.04 60.56 59.14 76.11 79.22 65.52 70.59 67.86 77.87 81.51 67.53 79.57 60.00 71.25 60.24 60.00 54.55 58.33 63.89 62.50 61.76 77.50 K jcn_only_AA MESR6,RI_chr3L_19086421_19086498 chr3L + chr3L_19086421_19086762 chr3L_19086421_19086498 chr3L_19086321_19086420;chr3L_19086763_19087328 2.33 0.00 2.38 5.81 2.78 3.03 3.85 3.23 3.23 4.76 0.00 5.06 3.85 2.27 3.70 0.00 2.86 9.09 0.00 3.30 0.00 7.14 0.00 0.00 4.00 0.00 4.44 0.00 4.35 0.00 1.64 0.00 0.00 2.00 6.25 0.00 3.51 0.00 0.00 5.08 0.00 3.70 0.00 3.12 NA 0.00 2.86 NA 2.67 0.00 0.00 0.00 NA 0.00 0.00 3.33 3.23 0.00 K intron_retention Gga chrX + chrX_9497758_9497833 chrX_9497757_9497758;chrX_9497833_9497834 chrX_9496778_9497757;chrX_9497834_9498315 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 1.92 0.00 0.00 0.00 0.00 1.67 2.94 2.04 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 K alternative_donor Pegarn chr3L + chr3L_12784392_12784534;chr3L_12784435_12784534 chr3L_12784406_12784534 chr3L_12784535_12784733;chr3L_12784381_12784391 22.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.00 K jcn_only_AA I_chr3R_8822346_8822403,CG7518 chr3R + chr3R_8832937_8833246 chr3R_8832937_8833113 chr3R_8832068_8832936;chr3R_8833247_8833436 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 1.69 0.00 0.00 0.00 0.50 K alternative_donor CG6490,F_chr3R_22303527_22303741 chr3R - chr3R_22358145_22360729 chr3R_22358145_22360445 chr3R_22357835_22358144;chr3R_22360730_22360878 100.00 100.00 100.00 93.33 100.00 100.00 95.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 94.44 92.31 100.00 100.00 100.00 100.00 94.44 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 92.31 100.00 NA NA 100.00 100.00 NA 100.00 K alternative_donor G-oalpha47A chr2R + chr2R_6325600_6326879 chr2R_6325612_6326879 chr2R_6326880_6326950;chr2R_6325501_6325599 92.31 NA NA NA NA NA 77.78 NA 92.86 NA NA 87.50 NA NA NA 86.67 NA NA NA 88.89 NA 100.00 100.00 NA NA NA NA NA NA 88.89 100.00 NA NA 88.89 87.50 NA NA 100.00 NA 92.31 NA 100.00 NA 100.00 NA NA 90.00 NA 100.00 NA 92.31 NA NA NA NA NA NA NA K jcn_only_AA Vha100-1,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24962422_24962803 chr3R_24962422_24962797 chr3R_24962326_24962421;chr3R_24962804_24962897 100.00 99.42 100.00 100.00 100.00 100.00 100.00 98.29 100.00 100.00 100.00 99.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.35 100.00 99.41 100.00 99.57 100.00 100.00 100.00 98.77 99.26 97.96 99.30 100.00 100.00 100.00 100.00 100.00 99.09 99.39 100.00 100.00 100.00 99.60 98.81 100.00 99.42 99.48 100.00 100.00 100.00 100.00 100.00 100.00 99.43 100.00 100.00 100.00 100.00 100.00 K intron_retention CG9467,E_chr3R_5625618_5626502 chr3R - chr3R_5626313_5626390 chr3R_5626312_5626313;chr3R_5626390_5626391 chr3R_5623432_5626312;chr3R_5626391_5626773 0.00 0.00 0.00 2.11 2.22 0.00 0.00 0.00 3.03 0.00 0.00 1.00 0.00 2.22 2.47 0.00 0.00 0.00 0.00 1.56 0.00 10.94 1.27 0.00 0.00 0.00 15.66 30.65 10.00 0.00 1.82 0.00 1.79 0.00 0.00 1.69 2.80 2.27 0.00 1.28 0.00 1.79 0.00 1.61 0.00 2.00 1.75 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N cassette Sap-r,E_chr3R_26711286_26714646,I_chr3R_26712627_26714606,RI_chr3R_26713323_26714382 chr3R - chr3R_26712627_26714606 chr3R_26712627_26714397;chr3R_26714462_26714606 chr3R_26714398_26714461 chr3R_26712527_26712626;chr3R_26714607_26714706 100.00 100.00 100.00 100.00 100.00 100.00 99.43 100.00 100.00 100.00 99.56 100.00 100.00 99.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.78 100.00 100.00 100.00 100.00 97.86 99.62 100.00 100.00 99.76 100.00 100.00 99.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.34 100.00 100.00 100.00 100.00 100.00 99.76 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention key,I_chr2R_20674247_20674291,I_chr2R_20674567_20674813,I_chr2R_20674654_20674897,RI_chr2R_20676692_20676888 chr2R - chr2R_20673207_20673258 chr2R_20673206_20673207;chr2R_20673258_20673259 chr2R_20673138_20673206;chr2R_20673259_20673618 1.57 2.13 0.00 3.70 6.06 1.47 3.39 1.15 2.97 0.00 0.00 1.61 0.00 0.00 0.00 2.15 0.00 0.00 0.00 1.68 1.92 2.53 0.00 7.14 0.00 2.44 17.54 2.86 6.38 1.54 2.33 0.00 2.83 3.57 0.00 5.88 0.00 0.00 4.00 1.75 1.57 4.72 0.00 0.00 0.70 1.61 5.66 0.00 1.38 2.04 4.41 0.00 0.00 0.00 2.30 1.19 2.15 1.41 K intron_retention sec23,I_chr3R_1474873_1475080,I_chr3R_1477727_1478102 chr3R + chr3R_1475383_1475441 chr3R_1475382_1475383;chr3R_1475441_1475442 chr3R_1475094_1475382;chr3R_1475442_1476691 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.38 0.42 0.00 0.00 0.00 0.42 1.49 0.00 0.54 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389762_2395659 chrX_2389762_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2393243;chrX_2393712_2394269;chrX_2394396_2395151;chrX_2395275_2395659 chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664;chrX_2393244_2393711;chrX_2394270_2394395;chrX_2395152_2395274 chrX_2389645_2389761;chrX_2395660_2395759 75.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention PP2A-B' chr3R + chr3R_13995821_13997250 chr3R_13995820_13995821;chr3R_13997250_13997251 chr3R_13995379_13995820;chr3R_13997251_13997425 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor pan chr4 + chr4_103373_106337 chr4_103377_106337 chr4_106338_106425;chr4_103264_103372 0.00 2.86 0.00 2.22 0.00 2.70 1.79 0.00 1.12 3.23 0.00 1.54 0.00 2.63 0.00 0.00 2.08 0.00 0.00 1.06 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 NA 0.00 1.43 0.00 4.00 0.00 0.00 0.00 0.00 NA 1.22 0.00 0.00 NA NA 0.00 NA 1.30 NA 2.94 0.00 NA NA 0.00 NA NA NA K intron_retention foxo,RI_chr3R_9883151_9883462,I_chr3R_9907161_9907218 chr3R + chr3R_9883151_9883462 chr3R_9883150_9883151;chr3R_9883462_9883463 chr3R_9883051_9883150;chr3R_9883463_9883562 100.00 NA NA 88.89 NA NA 100.00 100.00 95.83 NA NA 100.00 NA NA NA 92.86 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K cassette Jupiter,I_chr3R_7417030_7419354,I_chr3R_7417630_7417716,RI_chr3R_7442793_7445425 chr3R - chr3R_7417030_7417716 chr3R_7417030_7417222;chr3R_7417634_7417716 chr3R_7417223_7417633 chr3R_7416930_7417029;chr3R_7417717_7417734 94.12 92.31 88.89 75.00 88.89 83.33 100.00 90.91 95.24 73.33 100.00 95.45 100.00 90.00 100.00 92.86 88.89 90.91 100.00 94.74 88.89 100.00 91.30 88.00 100.00 87.50 87.50 96.77 83.33 92.31 91.67 91.67 100.00 91.67 93.33 85.00 96.00 94.44 95.45 95.45 94.12 100.00 100.00 100.00 90.48 95.65 93.75 100.00 94.74 94.74 96.00 90.91 100.00 100.00 90.91 100.00 86.96 100.00 K intron_retention CoVa,I_chr3R_7645367_7645428 chr3R + chr3R_7645367_7645432 chr3R_7645366_7645367;chr3R_7645432_7645433 chr3R_7645359_7645366;chr3R_7645433_7645528 5.66 12.50 3.79 5.87 7.00 6.05 4.37 3.73 4.42 5.66 4.00 5.38 5.45 6.29 6.11 6.09 4.55 5.12 3.70 4.42 3.96 3.21 12.24 10.75 14.71 6.71 41.67 26.83 10.94 3.47 3.21 4.87 1.78 4.38 11.69 7.37 12.63 10.29 11.81 5.52 1.84 4.81 4.44 8.57 2.61 4.89 19.35 2.26 3.93 20.41 29.03 5.71 8.55 47.62 3.22 22.73 12.66 1.36 K intron_retention CG5004,E_chrX_17024712_17024996 chrX + chrX_17021935_17022031 chrX_17021934_17021935;chrX_17022031_17022032 chrX_17020335_17021934;chrX_17022032_17022207 2.72 3.39 1.33 1.06 5.17 2.78 9.38 4.00 4.00 0.00 0.00 3.17 0.00 1.79 1.09 4.62 0.00 2.50 6.06 2.72 1.82 0.00 3.70 3.37 3.57 4.60 5.77 0.00 6.41 1.22 6.90 0.00 0.75 0.88 1.27 2.22 0.00 3.08 4.44 2.70 3.17 3.75 3.39 1.27 0.00 4.65 6.67 0.00 1.52 5.00 3.61 0.00 0.00 0.00 3.06 1.67 10.00 3.03 N jcn_only_AA TepIV,EI_chr2L_19548696_19549582 chr2L + chr2L_19548696_19551681;chr2L_19548696_19549858 chr2L_19548696_19549582 chr2L_19548596_19548695 12.90 11.54 34.62 22.00 0.00 9.09 13.21 7.84 10.64 4.55 NA 25.93 23.08 14.63 21.95 11.39 5.71 NA 11.76 14.58 12.90 7.23 17.11 11.11 7.69 17.78 10.81 12.98 14.52 15.00 15.91 NA NA 16.22 16.67 10.53 12.77 11.43 10.26 14.29 NA 12.50 14.71 14.93 NA 15.00 4.76 20.00 21.25 11.11 11.90 16.22 NA NA 10.53 NA 11.11 NA K jcn_only_AA RpL28,I_chr3L_3221982_3222744,I_chr3L_3222575_3222787 chr3L - chr3L_3221982_3222787 chr3L_3222575_3222787 chr3L_3222788_3222844;chr3L_3221882_3221981 0.00 NA NA 5.00 NA NA NA NA NA 5.00 NA 4.35 NA NA NA NA NA NA NA 0.00 NA 0.00 2.08 0.00 0.00 NA 0.00 5.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.33 1.82 0.00 8.70 0.00 NA 0.00 4.65 0.99 0.00 1.03 3.85 0.00 1.92 4.35 1.82 0.00 NA 0.00 3.57 2.29 K intron_retention CG14621,tilB chrX + chrX_21847820_21847884 chrX_21847819_21847820;chrX_21847884_21847885 chrX_21847611_21847819;chrX_21847885_21848010 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.06 0.00 5.26 0.00 0.00 NA 5.00 NA 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG15083 chr2R + chr2R_14724084_14724159 chr2R_14724084_14724130 chr2R_14723921_14724083;chr2R_14724160_14724348 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.47 0.00 0.57 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.44 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.83 0.00 0.48 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.39 0.00 0.00 0.00 N jcn_only_AD Tpi chr3R - chr3R_25959817_25960000;chr3R_25959817_25959887 chr3R_25959817_25959972 chr3R_25959232_25959816;chr3R_25960001_25960005 98.41 99.31 97.33 97.06 99.41 99.32 98.03 97.48 97.91 95.08 97.83 98.99 98.53 96.75 99.46 98.81 98.78 100.00 100.00 99.19 98.31 97.21 98.08 100.00 NA 98.80 100.00 97.25 83.50 97.30 97.16 96.40 90.18 98.42 98.81 100.00 100.00 100.00 98.41 95.28 98.81 98.64 100.00 97.40 94.79 95.06 100.00 90.52 98.09 98.72 98.44 100.00 96.39 99.08 98.25 98.48 95.00 88.46 K alternative_donor Crk,RI_chr4_231302_233315,RI_chr4_231307_231369,RI_chr4_231307_232217,I_chr4_231307_232253 chr4 + chr4_231302_232264 chr4_231307_232264 chr4_232265_232317;chr4_231208_231301 30.00 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA 30.00 NA NA NA 45.45 NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA 12.50 NA 25.00 NA NA NA NA NA 38.46 40.00 NA NA NA NA NA NA NA NA 12.00 K intron_retention MB8.chr3R.pasa.66,CG10055 chr3R - chr3R_3011933_3012027 chr3R_3011932_3011933;chr3R_3012027_3012028 chr3R_3011536_3011932;chr3R_3012028_3012400 11.11 12.50 13.33 10.00 NA NA 10.53 5.88 15.00 NA NA 13.33 12.50 12.50 7.14 4.76 NA NA NA 12.77 10.53 40.00 5.41 8.00 22.22 NA 19.23 20.00 22.22 8.33 11.11 12.50 0.00 0.00 12.50 13.33 6.25 9.09 8.70 13.79 0.00 0.00 NA 0.00 14.29 3.70 11.11 0.00 9.09 15.79 5.41 0.00 16.67 12.50 14.29 17.65 NA NA K multi_cassette par-1,I_chr2R_15359242_15360944,I_chr2R_15359251_15359544,I_chr2R_15359251_15360944,I_chr2R_15359658_15359771,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15359242_15360944 chr2R_15359242_15360323;chr2R_15360437_15360500;chr2R_15360685_15360944 chr2R_15360324_15360436;chr2R_15360501_15360684 chr2R_15359151_15359241;chr2R_15360945_15360953 100.00 100.00 100.00 100.00 100.00 98.67 100.00 99.02 100.00 100.00 98.48 100.00 100.00 100.00 100.00 100.00 98.67 98.77 100.00 100.00 100.00 94.92 99.42 99.20 98.99 100.00 99.32 100.00 98.78 100.00 100.00 100.00 100.00 100.00 100.00 99.14 99.37 100.00 100.00 100.00 100.00 100.00 98.65 100.00 98.44 98.90 100.00 100.00 99.33 98.85 99.41 100.00 100.00 100.00 100.00 100.00 99.00 100.00 K jcn_only_AA CG8449,RI_chr3R_9096143_9096213,RI_chr3R_9096632_9096844 chr3R - chr3R_9096143_9096213 chr3R_9096153_9096213 chr3R_9096214_9096281;chr3R_9096084_9096142 98.20 100.00 97.62 96.83 100.00 96.88 100.00 98.57 97.44 100.00 93.94 96.77 100.00 97.50 100.00 100.00 96.67 97.50 98.04 98.20 97.83 98.08 97.62 98.46 100.00 100.00 97.70 97.44 97.96 95.40 95.59 97.53 97.17 96.92 95.65 92.86 95.71 100.00 98.95 98.08 100.00 98.92 100.00 97.56 97.06 99.09 100.00 99.01 98.90 100.00 98.44 100.00 97.96 100.00 100.00 98.36 100.00 100.00 K intron_retention cdc2rk chr2R - chr2R_5955950_5956010 chr2R_5955949_5955950;chr2R_5956010_5956011 chr2R_5955877_5955949;chr2R_5956011_5956140 10.53 NA NA 14.29 NA NA NA NA 7.14 NA NA 4.76 NA NA NA NA NA NA NA 7.14 NA NA 23.08 NA NA NA NA NA NA NA 50.00 NA NA 10.53 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA 7.69 NA 5.26 10.53 17.65 NA 14.29 13.33 NA NA 15.62 NA K intron_retention CG34186 chr2R - chr2R_11032596_11032683 chr2R_11032595_11032596;chr2R_11032683_11032684 chr2R_11032292_11032595;chr2R_11032684_11032776 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.53 0.00 0.00 0.00 0.00 0.39 0.00 2.13 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.60 K intron_retention Dab chr3L + chr3L_16709938_16711346 chr3L_16709937_16709938;chr3L_16711346_16711347 chr3L_16709331_16709937;chr3L_16711347_16714116 16.67 NA NA 27.78 0.00 NA 30.77 5.56 11.11 17.65 NA 20.00 NA NA NA NA 6.67 NA NA 12.50 NA 52.00 13.51 18.52 NA NA 13.33 16.67 20.00 NA NA NA 19.05 12.50 NA NA 20.00 NA 12.00 19.05 NA 16.67 NA 29.41 NA NA NA 21.43 9.09 NA 13.79 NA NA NA NA NA NA NA K alternative_donor torp4a chrX - chrX_4543548_4543605 chrX_4543548_4543601 chrX_4542975_4543547;chrX_4543606_4544015 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6006 chr3R + chr3R_11984018_11984579 chr3R_11984017_11984018;chr3R_11984579_11984580 chr3R_11984008_11984017;chr3R_11984580_11984637 56.25 NA 45.45 NA NA NA 60.00 88.89 56.25 NA NA 47.06 NA NA NA 54.55 NA NA NA 72.22 NA NA NA NA NA NA NA NA NA NA 66.67 NA NA 56.25 NA NA NA NA NA 66.67 NA 44.44 NA NA NA NA NA NA 48.00 NA 42.86 NA NA NA NA NA NA NA K intron_retention l(1)G0136 chrX + chrX_15628486_15628585 chrX_15628485_15628486;chrX_15628585_15628586 chrX_15628315_15628485;chrX_15628586_15628639 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 1.61 0.00 0.00 NA 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD aPKC,RI_chr2R_10849347_10850321,RI_chr2R_10849347_10850391 chr2R - chr2R_10849347_10850391 chr2R_10849347_10850199 chr2R_10849247_10849346;chr2R_10850392_10850421 98.31 100.00 100.00 98.31 NA NA 100.00 98.04 98.92 NA NA 96.55 90.32 100.00 95.45 98.11 NA 100.00 96.30 94.29 NA 100.00 97.37 NA NA NA 100.00 NA 96.00 96.30 100.00 100.00 100.00 97.73 100.00 100.00 92.31 95.24 NA 100.00 100.00 100.00 100.00 94.29 NA 96.97 NA 98.28 97.62 NA 97.73 100.00 NA NA 96.43 NA NA 100.00 K intron_retention CG8777,RI_chr2R_4989921_4989993,Vang chr2R + chr2R_4986192_4986246 chr2R_4986191_4986192;chr2R_4986246_4986247 chr2R_4986108_4986191;chr2R_4986247_4986313 7.69 NA NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA 14.29 NA NA 11.76 NA NA NA 20.00 NA NA 7.69 11.76 NA 0.00 NA NA NA 0.00 5.56 NA NA NA NA NA 0.00 NA NA NA 7.14 12.50 NA 0.00 NA NA NA NA NA NA NA K alternative_donor Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4833234_4834454;chrX_4833203_4834454;chrX_4833308_4834454;chrX_4833338_4834454 chrX_4833364_4834454 chrX_4834455_4834880;chrX_4833197_4833202 0.00 0.00 0.00 6.67 0.00 NA 5.56 6.25 8.82 0.00 NA 6.67 0.00 0.00 14.29 16.67 0.00 0.00 14.29 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 9.09 NA 0.00 10.53 NA NA 0.00 NA NA 0.00 16.67 5.88 0.00 NA NA NA NA 0.00 16.67 NA NA NA NA NA 0.00 NA NA NA K intron_retention Spase12 chr3R - chr3R_25316476_25316531 chr3R_25316475_25316476;chr3R_25316531_25316532 chr3R_25316407_25316475;chr3R_25316532_25316612 2.61 3.67 2.76 2.97 2.11 1.63 1.59 1.28 1.67 3.93 2.48 2.00 1.80 2.30 1.72 2.17 2.22 1.57 1.76 1.45 1.69 4.88 5.54 2.84 8.47 3.33 6.29 6.99 20.00 3.12 1.10 2.91 2.66 1.31 3.62 4.87 3.85 3.12 2.17 3.34 10.98 1.54 2.57 2.61 2.38 4.83 2.35 4.87 1.54 2.85 3.10 2.41 3.86 2.23 1.11 2.69 2.67 1.95 K intron_retention spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20346245_20346307 chr2L_20346244_20346245;chr2L_20346307_20346308 chr2L_20345906_20346244;chr2L_20346308_20346511 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 4.84 2.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Cct5 chr2R + chr2R_8064224_8064282 chr2R_8064223_8064224;chr2R_8064282_8064283 chr2R_8063242_8064223;chr2R_8064283_8065030 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.22 0.22 0.00 0.00 0.00 0.00 0.20 0.00 0.53 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 1.04 0.24 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.17 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Edem1,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1798315_1798577 chrX_1798315_1798525 chrX_1798215_1798314;chrX_1798578_1798625 97.56 93.55 100.00 100.00 95.65 97.73 98.48 98.46 95.24 96.00 100.00 98.06 97.67 95.00 98.41 98.33 97.92 96.92 96.08 97.56 98.25 96.88 93.41 95.38 93.62 100.00 89.74 92.59 86.67 98.00 98.70 90.91 93.51 98.44 96.88 98.15 98.73 100.00 98.51 99.02 97.56 98.85 93.18 97.73 93.75 97.33 98.23 94.12 100.00 95.19 95.83 97.92 95.45 97.59 98.36 93.83 95.56 90.91 K intron_retention foxo,I_chr3R_9907161_9907218 chr3R + chr3R_9906186_9906432 chr3R_9906185_9906186;chr3R_9906432_9906433 chr3R_9905961_9906185;chr3R_9906433_9906513 0.00 NA NA NA NA NA NA NA 0.00 NA NA 4.55 NA NA NA NA NA NA NA 5.56 NA 0.00 0.00 NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 7.41 0.00 NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 K alternative_donor yellow-h,CG1674,F_chr4_252231_252560,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_252227_252560;chr4_252254_252560 chr4_251522_252560 chr4_252561_252603;chr4_251483_251521 0.00 0.00 0.00 0.00 NA 33.33 0.00 0.00 9.09 NA NA 0.00 16.67 0.00 0.00 0.00 0.00 0.00 0.00 16.67 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 50.00 NA 0.00 NA NA 0.00 0.00 0.00 33.33 NA NA 25.00 NA 25.00 0.00 K jcn_only_AD Bj1 chr3L - chr3L_5925418_5925624 chr3L_5925418_5925505 chr3L_5924718_5925417;chr3L_5925625_5925725 99.00 98.95 100.00 97.12 98.68 100.00 98.41 100.00 99.58 95.65 97.89 100.00 98.96 100.00 100.00 100.00 96.88 99.20 100.00 99.58 100.00 100.00 96.69 99.28 98.75 100.00 97.09 91.30 96.08 100.00 99.01 100.00 100.00 98.68 98.95 100.00 95.74 97.40 100.00 98.92 100.00 99.00 98.98 98.75 100.00 98.90 100.00 99.03 100.00 98.85 95.87 97.78 97.78 97.37 99.24 98.25 98.13 99.35 K intron_retention Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2604280_2607692 chr3L_2604279_2604280;chr3L_2607692_2607693 chr3L_2602428_2604279;chr3L_2607693_2607874 0.30 0.26 0.00 0.54 0.21 0.00 0.65 0.60 0.62 0.00 0.81 0.61 0.55 0.30 0.77 0.61 0.45 1.89 0.85 0.39 0.42 0.00 0.20 0.30 0.00 0.25 0.43 0.00 0.00 0.19 0.68 0.37 0.00 0.74 0.24 1.55 0.00 0.77 0.00 0.00 0.00 0.40 0.36 0.20 0.00 0.08 0.00 0.35 0.60 0.57 0.22 0.75 0.00 0.15 0.54 0.30 0.00 0.16 K jcn_only_AD skpA chrX + chrX_550433_551131;chrX_550498_551131;chrX_550818_551131;chrX_550638_551131;chrX_550523_551131;chrX_550654_551131 chrX_550774_551131 chrX_551132_551937;chrX_550426_550432 0.00 0.55 0.00 0.00 0.66 0.00 0.00 1.06 0.43 0.00 0.00 0.40 0.00 0.00 0.00 0.36 0.00 0.00 1.14 1.22 0.00 0.00 0.43 0.46 0.00 0.54 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.45 0.00 0.00 0.28 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.44 K jcn_only_AD sqh,I_chrX_6118043_6119039,I_chrX_6118150_6118725,I_chrX_6118150_6118729,I_chrX_6118150_6118790,I_chrX_6118150_6118800 chrX - chrX_6118150_6118729;chrX_6118150_6119035;chrX_6118150_6119039;chrX_6118150_6118949 chrX_6118150_6118725 chrX_6118050_6118149;chrX_6119040_6119139 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.15 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.12 0.00 0.18 0.00 0.19 0.14 0.00 0.00 0.00 0.00 0.18 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.16 0.16 0.00 0.12 0.00 N intron_retention Arf79F,I_chr3L_22863166_22863946,I_chr3L_22863166_22864419,RI_chr3L_22863251_22863389,RI_chr3L_22863251_22863952,I_chr3L_22863251_22864009,I_chr3L_22863251_22864188,I_chr3L_22863251_22864501,I_chr3L_22863251_22864629,RI_chr3L_22863251_22864763,I_chr3L_22863251_22864866,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22863251_22864547 chr3L_22863250_22863251;chr3L_22864547_22864548 chr3L_22863151_22863250;chr3L_22864548_22864601 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA 52.63 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA NA 100.00 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention Rip11,E_chrX_18532733_18533695,RI_chrX_18530353_18530870,RI_chrX_18544139_18544185 chrX - chrX_18531607_18531667 chrX_18531606_18531607;chrX_18531667_18531668 chrX_18531446_18531606;chrX_18531668_18531819 0.00 0.00 0.00 0.21 0.00 0.00 0.28 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.22 0.00 1.64 0.50 0.18 0.28 0.00 0.84 0.93 3.30 0.00 0.00 0.00 0.45 0.19 0.00 1.10 0.00 0.00 0.15 0.00 1.23 0.13 0.00 0.00 0.00 0.00 0.00 0.31 0.14 0.22 0.35 0.40 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG34348 chrX + chrX_11234779_11237278 chrX_11234778_11234779;chrX_11237278_11237279 chrX_11234640_11234778;chrX_11237279_11237945 0.00 0.00 NA NA NA NA 0.00 4.35 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention pum,I_chr3R_4898752_4906279,I_chr3R_4989351_5039481 chr3R - chr3R_4897160_4897228 chr3R_4897159_4897160;chr3R_4897228_4897229 chr3R_4895479_4897159;chr3R_4897229_4897397 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 1.36 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG30035 chr2R + chr2R_7556186_7556771 chr2R_7556185_7556186;chr2R_7556771_7556772 chr2R_7555933_7556185;chr2R_7556772_7557706 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 6.67 2.61 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 K alternative_acceptor CG10225,CG10221,CG10219 chr3R - chr3R_19578295_19578425 chr3R_19578298_19578425 chr3R_19578426_19578558;chr3R_19576659_19578294 94.12 100.00 100.00 96.00 91.67 NA 88.89 100.00 96.67 NA 87.50 100.00 100.00 92.31 93.75 95.45 92.31 88.89 93.33 91.67 100.00 95.65 95.83 91.67 92.31 100.00 94.44 90.00 87.50 88.89 86.67 NA NA 100.00 100.00 91.67 100.00 100.00 100.00 100.00 NA 95.45 100.00 88.89 87.50 90.91 93.75 NA 92.59 100.00 94.12 100.00 87.50 92.31 92.31 100.00 96.00 88.89 K jcn_only_AA nct,I_chr3R_20679262_20679308 chr3R + chr3R_20679262_20679324;chr3R_20679262_20679333 chr3R_20679262_20679308 chr3R_20679193_20679261;chr3R_20679334_20679393 1.81 0.87 1.64 1.76 0.72 2.84 1.18 2.29 0.52 0.00 0.61 1.96 0.79 0.76 1.81 3.05 1.44 1.76 1.37 1.58 0.56 2.06 2.98 3.64 1.90 2.63 2.77 4.00 2.66 1.71 7.91 2.34 3.31 1.30 0.76 5.07 4.84 1.40 2.65 3.11 2.60 1.30 0.77 1.69 1.35 1.17 3.33 2.00 0.45 4.31 3.08 4.41 2.17 0.67 1.12 2.41 1.36 3.64 K cassette CG2519 chr3R - chr3R_1370791_1371914 chr3R_1370791_1371392;chr3R_1371465_1371914 chr3R_1371393_1371464 chr3R_1370469_1370790;chr3R_1371915_1372122 7.69 12.50 NA 4.00 14.29 NA NA 12.50 12.00 NA NA 0.00 55.56 18.18 11.76 7.69 7.69 NA NA 6.25 NA 26.32 3.45 14.29 NA 16.67 17.65 NA NA 6.25 20.00 NA 7.14 6.67 NA 5.00 4.35 7.69 7.69 9.52 NA 9.09 NA NA NA 7.14 NA NA 4.76 NA 13.04 NA NA NA 7.69 NA NA NA K intron_retention Top3beta,Rpt4,CG15891 chrX - chrX_6184992_6185047 chrX_6184991_6184992;chrX_6185047_6185048 chrX_6184872_6184991;chrX_6185048_6185259 0.00 0.00 0.00 1.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.65 0.00 0.00 0.77 0.00 0.00 0.00 0.39 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.71 0.00 0.00 K cassette Cp1,Aats-phe chr2R + chr2R_9852992_9854259 chr2R_9852992_9853109;chr2R_9853291_9854259 chr2R_9853110_9853290 chr2R_9852694_9852991;chr2R_9854260_9854474 43.33 40.62 37.14 17.86 33.33 26.67 43.33 35.29 40.28 66.67 37.50 52.63 53.12 31.71 50.00 31.58 37.50 66.67 38.30 47.79 41.38 36.67 55.77 43.18 47.83 37.93 48.57 57.14 50.00 50.00 29.75 28.57 50.00 35.94 48.28 45.83 51.35 48.15 53.33 47.76 39.13 36.36 35.48 51.35 32.14 45.95 38.78 52.00 39.73 41.18 46.51 50.00 47.06 45.45 43.59 37.50 44.29 32.43 K jcn_only_AD CAH2 chr3L + chr3L_12173174_12174775 chr3L_12173256_12174775 chr3L_12174776_12175248;chr3L_12172979_12173173 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.18 98.51 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 K intron_retention Syb chr2R - chr2R_6137254_6138447 chr2R_6137253_6137254;chr2R_6138447_6138448 chr2R_6137005_6137253;chr2R_6138448_6138649 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.76 100.00 100.00 100.00 99.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.80 99.85 100.00 100.00 99.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.88 K cassette CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20824631_20825667;chr2L_20824631_20825658 chr2L_20824631_20825283;chr2L_20825513_20825658,chr2L_20825513_20825667 chr2L_20825284_20825512 chr2L_20824625_20824630;chr2L_20825668_20825758 63.64 75.00 52.78 54.55 47.37 50.00 73.17 54.76 65.52 73.33 75.86 50.00 27.27 64.00 52.94 57.50 51.52 59.26 48.15 51.32 61.54 63.64 86.11 74.29 78.57 66.67 89.66 67.86 67.74 58.82 52.50 57.58 45.45 50.00 88.89 90.48 81.25 83.33 88.24 64.10 59.38 46.88 66.67 64.58 50.00 62.30 81.25 40.00 53.33 90.00 75.61 76.19 60.00 92.31 55.88 84.85 71.79 37.35 K multi_cassette AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9003790_9007675 chrX_9003790_9005114;chrX_9005177_9005419;chrX_9005562_9005630;chrX_9005820_9005886;chrX_9006126_9006195;chrX_9006273_9006782;chrX_9006801_9007675 chrX_9005115_9005176;chrX_9005420_9005561;chrX_9005631_9005819;chrX_9005887_9006125;chrX_9006196_9006272;chrX_9006783_9006800 chrX_9003721_9003789;chrX_9007676_9007775 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 93.75 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG18005 chr3R - chr3R_4889063_4889127 chr3R_4889062_4889063;chr3R_4889127_4889128 chr3R_4888832_4889062;chr3R_4889128_4890779 0.00 NA 0.00 10.53 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 5.56 NA 0.00 NA NA 0.00 4.17 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17389985_17397622;chr2R_17389985_17397610;chr2R_17389985_17398371 chr2R_17389985_17394799;chr2R_17395228_17397610,chr2R_17395228_17398371,chr2R_17395228_17397622 chr2R_17394800_17395227 chr2R_17389891_17389984;chr2R_17398372_17398565 88.89 92.86 88.89 68.75 100.00 100.00 83.33 71.43 80.77 91.67 54.55 87.50 83.33 100.00 100.00 72.73 88.89 87.50 85.71 93.75 83.33 76.32 79.17 95.83 100.00 75.00 88.89 54.17 78.95 100.00 87.50 100.00 83.33 100.00 93.75 77.78 100.00 81.82 87.50 93.75 91.67 85.71 87.50 88.24 90.91 92.86 100.00 90.91 93.75 84.21 94.12 100.00 92.31 100.00 87.50 100.00 80.00 100.00 K jcn_only_AD lolal,I_chr2R_14043671_14043736,I_chr2R_14043671_14043740,I_chr2R_14043671_14043901,RI_chr2R_14043671_14044082,I_chr2R_14043671_14044191,I_chr2R_14043671_14044461,I_chr2R_14043671_14045289,I_chr2R_14043671_14045344 chr2R - chr2R_14043671_14045477 chr2R_14043671_14045446 chr2R_14043571_14043670;chr2R_14045478_14045549 29.82 NA 29.82 23.33 NA 17.24 25.00 34.33 30.19 NA 25.93 35.42 41.67 28.12 21.43 36.36 20.00 36.67 28.95 43.08 31.82 21.88 NA NA NA 32.43 NA NA 39.47 21.21 36.11 21.62 25.97 28.36 NA NA NA NA NA 40.00 34.29 21.62 20.00 NA 40.48 33.33 NA 36.84 23.26 NA NA NA NA NA 10.71 NA NA 37.98 N alternative_donor Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824086_11824525;chr2R_11824086_11825790 chr2R_11824086_11824186 chr2R_11823989_11824085 37.68 36.11 34.88 40.00 57.58 26.00 34.88 30.00 31.29 38.71 25.00 63.01 36.59 40.00 40.68 57.95 36.17 27.78 58.33 32.37 27.50 71.43 30.61 36.90 50.00 50.00 39.73 57.75 61.40 50.88 40.38 42.11 60.24 43.84 37.25 45.57 31.03 29.73 31.19 42.59 65.12 37.50 44.74 50.00 62.37 48.05 37.68 55.56 27.88 30.26 34.25 33.33 29.03 30.77 35.59 32.86 29.07 43.59 K intron_retention Ada2b,RI_chr3R_4068335_4068401 chr3R - chr3R_4065329_4066031 chr3R_4065328_4065329;chr3R_4066031_4066032 chr3R_4064453_4065328;chr3R_4066032_4066321 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.70 0.00 0.00 0.00 5.41 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 4.55 4.29 0.00 0.00 0.00 3.85 0.00 0.00 0.00 2.27 0.00 0.00 1.64 2.78 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG12030 chr3L + chr3L_649052_649178 chr3L_649051_649052;chr3L_649178_649179 chr3L_648517_649051;chr3L_649179_649419 2.35 1.79 2.65 3.97 2.32 2.36 3.31 2.30 2.17 2.63 2.30 2.11 2.31 2.81 1.52 2.65 2.15 2.30 2.12 2.41 2.65 22.26 1.80 1.58 2.78 4.05 1.63 5.61 16.57 2.20 2.17 2.33 3.04 2.13 2.91 2.14 1.53 2.55 2.53 3.48 5.49 2.35 2.00 1.28 3.13 3.22 2.43 2.90 1.95 4.03 2.84 2.32 1.52 2.67 2.48 1.89 0.99 1.83 K alternative_acceptor ena chr2R + chr2R_15047541_15047756;chr2R_15047541_15047681;chr2R_15047541_15047753 chr2R_15047541_15047684 chr2R_15047496_15047540;chr2R_15047757_15048407 56.29 60.68 57.28 55.43 53.21 53.00 58.51 59.64 56.32 63.64 50.00 57.82 53.03 62.20 57.46 53.41 56.57 54.24 62.50 56.29 53.98 52.48 58.39 54.95 57.83 59.52 57.55 62.79 56.16 55.94 60.82 56.92 54.68 56.07 60.98 55.68 59.32 54.00 54.27 58.87 60.38 55.83 63.29 55.37 51.55 55.00 54.43 54.31 56.50 55.56 54.87 53.45 55.22 58.06 61.27 57.14 50.79 60.38 K multi_cassette I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499338_1501350 chr3L_1499338_1499771;chr3L_1499880_1500244;chr3L_1500389_1501350 chr3L_1499772_1499879;chr3L_1500245_1500388 chr3L_1499043_1499337;chr3L_1501351_1501397 80.00 NA NA 100.00 NA NA NA 100.00 100.00 75.00 100.00 100.00 93.33 75.00 60.00 75.00 NA NA 75.00 80.00 100.00 83.33 55.56 80.00 100.00 NA 80.00 80.00 NA 80.00 63.64 NA 60.00 80.00 80.00 100.00 80.00 75.00 71.43 66.67 NA 83.33 NA 83.33 80.00 87.50 75.00 55.56 83.33 83.33 87.50 71.43 NA NA 75.00 63.64 NA NA K intron_retention Hph chr3R + chr3R_1091360_1092474 chr3R_1091359_1091360;chr3R_1092474_1092475 chr3R_1091273_1091359;chr3R_1092475_1092754 0.00 0.00 3.12 6.25 0.00 0.00 1.96 0.00 0.00 NA 4.35 0.00 NA 0.00 3.12 3.39 10.53 0.00 3.33 0.00 0.00 0.00 0.00 0.00 NA 8.33 0.00 NA NA 0.00 0.00 NA NA 0.00 7.14 NA 0.00 0.00 0.00 0.00 NA 1.67 0.00 0.00 4.76 0.00 0.00 0.00 3.77 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA K jcn_only_AD Reps,I_chr2L_11105525_11105656 chr2L - chr2L_11105525_11105656 chr2L_11105525_11105606 chr2L_11105425_11105524;chr2L_11105657_11105756 100.00 96.67 97.06 100.00 NA 100.00 100.00 100.00 100.00 98.28 NA 100.00 100.00 NA 100.00 NA NA 100.00 NA 100.00 NA 100.00 99.00 100.00 100.00 NA 100.00 100.00 98.41 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.95 96.97 100.00 NA 100.00 100.00 100.00 96.97 100.00 100.00 100.00 97.10 100.00 97.22 95.24 NA 100.00 100.00 100.00 K intron_retention Doa,I_chr3R_24715823_24718923,I_chr3R_24747391_24747896 chr3R + chr3R_24743942_24745213 chr3R_24743941_24743942;chr3R_24745213_24745214 chr3R_24742148_24743941;chr3R_24745214_24745289 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 95.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 94.12 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 K alternative_donor CG1599,I_chr2R_5729274_5729347,I_chr2R_5729744_5729805 chr2R - chr2R_5729274_5729351 chr2R_5729274_5729347 chr2R_5729174_5729273;chr2R_5729352_5729447 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 1.18 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8088454_8105691 chr2L_8088454_8089184;chr2L_8089737_8105691 chr2L_8089185_8089736 chr2L_8088448_8088453;chr2L_8105692_8105782 100.00 100.00 100.00 99.84 100.00 100.00 100.00 100.00 99.88 100.00 100.00 99.83 99.74 100.00 99.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.63 100.00 100.00 100.00 99.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.28 100.00 99.23 99.72 99.86 100.00 100.00 100.00 100.00 98.97 100.00 100.00 100.00 100.00 K intron_retention RI_chr3L_21188731_21188785,CG33054,CG33056 chr3L - chr3L_21192284_21192345 chr3L_21192283_21192284;chr3L_21192345_21192346 chr3L_21191981_21192283;chr3L_21192346_21192435 5.56 5.26 0.00 8.82 0.00 3.23 6.25 14.29 6.25 0.00 0.00 3.51 10.53 0.00 0.00 2.78 5.71 11.11 6.06 8.22 0.00 12.50 7.58 1.89 9.09 10.71 0.00 0.00 12.50 0.00 10.42 0.00 6.67 5.56 12.12 NA 5.77 2.86 0.00 2.78 13.79 5.63 11.43 5.56 0.00 9.38 1.69 0.00 7.78 10.00 10.53 8.70 5.56 2.63 9.52 0.00 4.62 0.00 K intron_retention CG11247,I_chr3L_21718596_21718659 chr3L - chr3L_21720038_21721386 chr3L_21720037_21720038;chr3L_21721386_21721387 chr3L_21719263_21720037;chr3L_21721387_21721473 3.33 0.00 0.00 19.05 NA NA 13.79 5.13 17.65 0.00 NA 13.79 11.11 9.09 0.00 5.26 16.67 5.56 0.00 4.65 0.00 0.00 5.71 5.56 0.00 7.41 0.00 3.33 0.00 0.00 13.64 NA 3.12 0.00 0.00 16.67 5.00 0.00 6.67 5.00 8.70 0.00 0.00 3.85 0.00 0.00 0.00 9.38 10.26 0.00 6.90 5.88 0.00 0.00 0.00 0.00 0.00 7.89 K alternative_donor fs(1)h,I_chrX_7950171_7952371,RI_chrX_7954192_7954783,I_chrX_7954192_7955240 chrX - chrX_7954192_7954935 chrX_7954192_7954909 chrX_7954092_7954191;chrX_7954936_7954951 44.44 45.00 46.88 44.44 43.75 30.00 64.44 46.43 43.33 45.45 34.78 43.10 50.00 43.59 41.94 50.00 42.86 43.75 40.43 36.23 39.29 46.15 45.45 NA 55.56 29.63 46.15 62.50 88.89 55.56 43.48 NA 33.33 34.85 46.15 50.00 46.15 NA 41.67 40.74 NA 51.11 44.44 43.48 NA 38.46 NA 55.56 45.45 NA 43.75 NA NA NA 46.15 NA NA NA K alternative_donor CG9836,I_chr3R_4654041_4664113,I_chr3R_4749124_4756437 chr3R - chr3R_4648792_4648989;chr3R_4648792_4648982 chr3R_4648792_4648970 chr3R_4648564_4648791;chr3R_4648990_4649023 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 1.72 0.00 0.00 0.00 1.69 0.00 2.94 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 1.39 0.00 0.75 0.00 K intron_retention gfzf,MB8.chr3R.pasa.66 chr3R - chr3R_2972815_2973399 chr3R_2972814_2972815;chr3R_2973399_2973400 chr3R_2972667_2972814;chr3R_2973400_2974073 1.49 0.00 4.88 12.00 4.17 0.00 0.00 4.17 1.49 6.25 7.41 1.54 6.25 10.71 5.00 5.56 0.00 0.00 6.06 0.00 16.67 0.00 0.00 2.44 0.00 9.09 0.00 0.00 2.60 0.00 0.00 2.50 1.43 0.00 0.00 5.41 0.00 0.00 2.44 0.00 0.00 6.56 3.45 0.00 3.51 3.85 2.94 1.47 1.92 4.84 0.00 0.00 0.00 0.00 0.00 4.44 0.00 2.99 K jcn_only_AA CG42327,CG14715,I_chr3R_7498847_7498975,I_chr3R_7506312_7506381 chr3R + chr3R_7498847_7498975 chr3R_7498847_7498949 chr3R_7498747_7498846;chr3R_7498976_7499075 100.00 99.49 99.38 100.00 99.19 100.00 100.00 99.49 100.00 99.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.39 100.00 100.00 100.00 100.00 100.00 99.33 100.00 99.38 100.00 100.00 100.00 99.48 99.52 100.00 99.44 100.00 99.56 100.00 100.00 99.00 100.00 100.00 100.00 100.00 99.13 100.00 100.00 99.71 99.61 99.49 100.00 100.00 100.00 100.00 99.47 100.00 100.00 99.14 K intron_retention CG8831,E_chr2R_8316099_8317600 chr2R - chr2R_8316348_8316414 chr2R_8316347_8316348;chr2R_8316414_8316415 chr2R_8315954_8316347;chr2R_8316415_8316976 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor CG32369,noncoding_11198 chr3L - chr3L_7774151_7796368 chr3L_7796250_7796368 chr3L_7796369_7797807;chr3L_7774032_7774150 1.54 0.00 3.33 4.44 4.76 0.00 3.92 1.64 2.86 0.00 0.00 3.03 4.55 3.23 3.85 2.13 3.45 4.35 3.33 2.22 0.00 1.06 1.23 2.00 0.00 2.78 1.54 1.30 1.18 0.00 2.38 0.00 1.61 3.92 2.33 2.00 0.00 0.00 0.00 1.79 0.00 1.47 5.26 1.64 0.00 0.00 0.00 1.15 1.72 0.00 2.22 0.00 0.00 0.00 3.12 0.00 0.00 0.00 K intron_retention CG1599,I_chr2R_5729744_5729805 chr2R - chr2R_5729673_5729805 chr2R_5729672_5729673;chr2R_5729805_5729806 chr2R_5729644_5729672;chr2R_5729806_5729905 0.00 0.00 2.70 2.38 0.00 0.00 2.34 1.45 0.79 0.00 4.00 0.00 2.47 0.00 4.00 0.00 0.00 0.00 2.41 2.11 0.00 0.00 2.02 1.02 0.00 0.00 0.85 3.33 5.41 0.00 0.00 0.00 3.45 1.32 0.00 4.17 0.00 0.00 0.00 0.00 5.88 1.40 2.82 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 6.90 K jcn_only_AD chinmo chr2L + chr2L_1651713_1652774;chr2L_1651430_1652774 chr2L_1651412_1652774 chr2L_1652775_1653511;chr2L_1651300_1651411 5.58 NA 4.55 4.17 NA 10.34 0.00 2.04 3.12 NA NA 17.14 3.57 3.23 16.00 10.00 NA 9.09 7.14 9.43 NA NA 3.70 NA NA NA NA NA NA NA 8.00 NA 9.09 5.45 NA NA NA NA NA 5.71 NA 11.48 NA 2.78 NA 0.00 NA 2.63 5.77 NA 13.04 NA NA NA 4.17 NA NA NA K alternative_donor CG14614,RI_chrX_21856027_21856279,REI_chrX_21856047_21856229,RI_chrX_21856896_21857109 chrX - chrX_21856027_21856279 chrX_21856027_21856229 chrX_21855947_21856026;chrX_21856280_21856329 98.28 96.49 98.61 95.88 98.18 95.89 95.83 99.02 97.35 100.00 100.00 98.56 100.00 98.46 98.75 97.85 98.11 100.00 98.51 100.00 93.75 98.67 98.84 100.00 98.25 98.63 97.59 94.64 96.61 97.22 97.85 97.14 98.65 100.00 98.28 96.00 98.90 98.18 97.37 98.28 100.00 96.88 96.36 98.70 98.04 98.48 98.18 98.77 98.51 96.88 98.59 100.00 100.00 100.00 98.78 97.96 96.77 97.30 K jcn_only_AD CG12428,I_chr3R_23531574_23532266 chr3R - chr3R_23531574_23531786;chr3R_23531574_23531981 chr3R_23531574_23532276 chr3R_23531474_23531573;chr3R_23532277_23532366 33.52 NA NA 52.00 NA NA 25.00 27.27 37.04 NA NA NA NA NA NA NA NA NA NA 42.11 NA 26.92 42.86 NA NA NA NA NA NA 20.00 4.76 NA NA NA NA NA NA NA NA NA NA 39.13 NA NA NA NA NA NA 40.62 NA 30.00 NA NA NA NA NA NA NA K intron_retention CG3313 chr3R - chr3R_7841122_7841185 chr3R_7841121_7841122;chr3R_7841185_7841186 chr3R_7840590_7841121;chr3R_7841186_7841590 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention cno,I_chr3R_999718_999986,I_chr3R_999737_999777,I_chr3R_1003608_1005580,noncoding_14652,F_chr3R_1006551_1006778,I_chr3R_1006714_1006778 chr3R - chr3R_1003233_1003358 chr3R_1003232_1003233;chr3R_1003358_1003359 chr3R_1003016_1003232;chr3R_1003359_1003607 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor lolal,I_chr2R_14043671_14043736,I_chr2R_14043671_14043740,I_chr2R_14043671_14043901,RI_chr2R_14043671_14044082,I_chr2R_14043671_14044191,I_chr2R_14043671_14044461,I_chr2R_14043671_14045289,I_chr2R_14043671_14045344 chr2R - chr2R_14043671_14044260 chr2R_14043671_14044251 chr2R_14043571_14043670;chr2R_14044261_14044291 100.00 NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA 87.50 NA NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 87.50 NA NA NA NA NA NA NA NA NA K intron_retention CG9203 chrX - chrX_15368993_15369071 chrX_15368992_15368993;chrX_15369071_15369072 chrX_15368636_15368992;chrX_15369072_15369194 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD RpL32,I_chr3R_25871509_25871807 chr3R - chr3R_25871509_25871851;chr3R_25871509_25871771;chr3R_25871509_25871583;chr3R_25871509_25871855 chr3R_25871509_25871611 chr3R_25871409_25871508;chr3R_25871856_25871862 0.00 0.00 0.00 0.03 0.00 0.06 0.00 0.00 0.02 0.15 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.20 0.00 0.16 0.08 0.00 0.00 0.26 0.00 0.00 0.00 0.04 0.12 0.02 0.00 0.00 0.05 0.10 0.25 0.00 0.04 0.09 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3018018_3018278 chr2L_3018018_3018163 chr2L_3017982_3018017;chr2L_3018279_3018287 100.00 85.71 NA 100.00 NA NA 100.00 100.00 96.43 NA NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA 87.50 NA 90.00 100.00 NA NA NA NA NA 100.00 NA 100.00 NA 100.00 NA 91.67 NA 100.00 100.00 NA NA 88.89 NA NA NA NA NA 100.00 K intron_retention cul-2,I_chr2L_21662021_21662083 chr2L + chr2L_21662453_21662517 chr2L_21662452_21662453;chr2L_21662517_21662518 chr2L_21662084_21662452;chr2L_21662518_21662631 0.00 0.00 0.00 1.63 0.00 0.00 0.47 0.00 0.69 0.00 0.00 0.79 0.00 5.97 1.41 1.68 0.00 0.00 1.01 0.00 0.00 2.94 2.60 0.00 0.00 0.00 1.79 1.96 9.52 0.00 0.00 0.00 0.00 0.00 3.28 1.59 0.00 0.00 0.00 1.30 2.13 2.48 0.00 1.12 0.00 1.23 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 K alternative_donor CG12773 chrX - chrX_1247232_1247288 chrX_1247232_1247285 chrX_1246687_1247231;chrX_1247289_1248009 100.00 100.00 100.00 100.00 93.33 100.00 100.00 95.00 96.88 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 94.74 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 95.83 94.74 100.00 96.97 95.45 96.43 100.00 100.00 97.06 92.31 100.00 94.74 100.00 100.00 100.00 95.83 100.00 95.83 92.86 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Tm1 chr3R + chr3R_11113825_11113974 chr3R_11113824_11113825;chr3R_11113974_11113975 chr3R_11113814_11113824;chr3R_11113975_11115161 90.91 NA NA 93.33 NA NA NA 92.86 93.33 NA NA 90.91 NA NA NA 66.67 NA NA 88.89 70.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 77.78 NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_716066_716613 chr4_716065_716066;chr4_716613_716614 chr4_716053_716065;chr4_716614_716661 92.59 100.00 90.91 96.88 NA 92.86 100.00 97.44 92.31 NA NA 94.59 100.00 95.83 100.00 93.65 83.33 69.23 81.25 95.45 77.78 NA 91.67 NA 87.50 88.89 90.00 NA NA NA 94.44 NA NA 93.94 100.00 NA NA NA NA 92.31 NA 92.00 94.74 100.00 NA NA NA NA 87.23 NA 88.89 90.91 NA NA 85.71 NA NA NA N jcn_only_AD I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545799_17545850;chr2R_17545767_17545850;chr2R_17545615_17545850;chr2R_17545686_17545850;chr2R_17545690_17545850 chr2R_17545781_17545850 chr2R_17545851_17545985;chr2R_17545613_17545614 37.60 38.36 18.57 19.10 15.29 16.85 36.84 22.02 22.99 66.67 25.00 25.22 6.78 20.69 19.64 28.74 11.59 26.47 13.70 22.73 33.33 33.33 64.86 66.67 73.91 22.97 52.63 NA 55.41 54.29 21.79 44.23 45.83 20.56 47.83 40.62 53.73 52.83 55.56 61.29 51.43 13.98 18.84 53.33 25.26 62.30 58.93 70.73 16.38 63.41 58.93 70.97 29.09 87.80 24.32 55.56 44.44 56.14 K intron_retention CG5861,RI_chr2L_16309575_16309999,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16306624_16306693 chr2L_16306623_16306624;chr2L_16306693_16306694 chr2L_16306515_16306623;chr2L_16306694_16306831 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 1.86 3.78 3.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 1.11 1.27 0.00 0.00 0.00 0.39 0.50 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 K alternative_acceptor fal,I_chr3L_19289660_19290145 chr3L + chr3L_19290313_19290378 chr3L_19290313_19290376 chr3L_19290146_19290312;chr3L_19290379_19290548 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.41 100.00 100.00 97.50 95.00 100.00 100.00 96.00 100.00 100.00 94.74 100.00 95.24 100.00 100.00 96.67 95.45 94.74 95.24 100.00 94.44 100.00 96.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 93.75 100.00 100.00 97.87 100.00 100.00 100.00 100.00 93.33 95.45 100.00 100.00 96.55 100.00 100.00 100.00 96.97 100.00 95.83 100.00 K intron_retention rtet,I_chr3R_16934777_16934968,RE_chr3R_16939259_16939667 chr3R + chr3R_16934773_16934968 chr3R_16934772_16934773;chr3R_16934968_16934969 chr3R_16934677_16934772;chr3R_16934969_16935068 0.00 0.00 0.00 1.74 0.00 0.00 1.90 1.50 0.00 0.00 0.00 1.15 1.28 0.00 0.00 1.90 0.00 0.00 1.23 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.99 0.00 2.30 0.00 0.00 3.08 0.61 0.00 0.00 2.29 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor nes chr3L - chr3L_19253331_19253632;chr3L_19253331_19253636;chr3L_19253331_19253676;chr3L_19253331_19253648;chr3L_19253331_19253745;chr3L_19253331_19253764 chr3L_19253331_19253609 chr3L_19253215_19253330;chr3L_19253765_19253779 8.33 10.00 8.33 7.69 9.09 0.00 10.53 10.53 12.50 0.00 0.00 6.25 12.50 9.09 8.33 7.14 14.29 12.50 9.09 6.25 0.00 0.00 7.14 8.33 0.00 10.00 10.00 20.00 20.00 0.00 9.09 20.00 12.50 5.26 0.00 16.67 0.00 0.00 10.00 7.14 14.29 9.52 0.00 0.00 12.50 15.38 11.11 14.29 9.09 0.00 8.33 10.00 0.00 0.00 0.00 0.00 0.00 20.00 K intron_retention CG8051,I_chrX_19197569_19197669 chrX - chrX_19197573_19197669 chrX_19197572_19197573;chrX_19197669_19197670 chrX_19197446_19197572;chrX_19197670_19197769 3.39 5.56 4.65 6.38 2.38 8.70 3.92 2.90 4.88 3.70 0.00 1.19 12.50 4.76 7.84 4.17 0.00 2.70 4.88 5.19 2.86 3.39 3.51 0.00 6.06 4.55 9.72 8.06 2.35 1.67 2.63 3.12 4.94 2.94 0.00 4.55 2.86 2.27 2.50 5.06 3.12 3.12 0.00 2.70 2.78 3.77 6.45 1.14 4.40 0.00 0.00 0.00 4.65 8.00 5.13 4.26 0.00 0.00 K alternative_donor Pdp,RI_chrX_7626915_7627016,RI_chrX_7626915_7627048 chrX - chrX_7626915_7627020 chrX_7626915_7627016 chrX_7626815_7626914;chrX_7627021_7627116 0.00 0.00 0.00 3.70 0.00 0.00 3.57 3.45 2.22 NA 0.00 0.00 6.67 4.17 5.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 10.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 NA 0.00 0.00 0.00 0.00 3.03 0.00 K intron_retention sar1,I_chr3R_18185148_18185246 chr3R + chr3R_18182490_18183252 chr3R_18182489_18182490;chr3R_18183252_18183253 chr3R_18182397_18182489;chr3R_18183253_18183393 85.41 NA NA 90.00 NA NA 87.50 NA 76.92 NA NA 70.00 NA NA 63.64 NA NA NA 83.33 100.00 NA 90.00 NA NA NA NA NA NA 88.89 NA 90.00 NA NA 60.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 63.64 NA NA NA NA NA NA NA NA 80.00 K cassette CLIP-190,I_chr2L_17394493_17404060,I_chr2L_17401291_17404060,I_chr2L_17401582_17402303 chr2L + chr2L_17401582_17404729;chr2L_17401582_17404060;chr2L_17401291_17404060 chr2L_17401582_17402374,chr2L_17401291_17402374;chr2L_17402486_17404060,chr2L_17402486_17404729 chr2L_17402375_17402485 chr2L_17401191_17401290;chr2L_17404730_17404840 100.00 100.00 95.45 100.00 100.00 100.00 73.68 96.77 100.00 100.00 94.12 97.44 100.00 100.00 96.43 100.00 100.00 100.00 100.00 98.11 100.00 90.00 100.00 96.77 100.00 94.12 100.00 88.89 93.33 100.00 100.00 100.00 100.00 96.97 93.33 100.00 100.00 100.00 95.83 97.44 100.00 97.62 100.00 100.00 95.83 95.24 93.75 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Bsg25D chr2L - chr2L_5273591_5274018 chr2L_5273590_5273591;chr2L_5274018_5274019 chr2L_5273583_5273590;chr2L_5274019_5275763 63.64 60.00 57.14 42.86 NA 70.00 41.67 53.33 47.37 NA NA 46.15 NA 60.00 NA 80.00 NA 38.46 NA 52.78 NA 66.67 61.90 66.67 77.78 NA 73.33 90.91 75.00 50.00 53.33 53.85 55.56 52.94 63.64 71.43 83.33 56.25 72.22 66.67 66.67 43.48 NA 57.14 75.00 80.00 80.95 81.82 50.00 86.67 65.38 63.64 55.56 81.82 NA 78.57 100.00 56.25 K jcn_only_AD I_chr3R_25875159_25875219,CG34317,CG7950,noncoding_20085,F_chr3R_25908044_25945850 chr3R + chr3R_25882757_25882861 chr3R_25882806_25882861 chr3R_25882862_25882884;chr3R_25882665_25882756 2.63 2.94 0.00 0.00 9.09 4.55 6.67 1.83 1.45 0.00 4.00 3.95 7.69 6.38 2.60 0.00 4.88 1.85 5.56 1.42 5.00 7.32 0.00 4.17 5.13 1.18 6.98 3.85 6.35 1.96 1.01 2.90 2.74 1.79 0.00 0.00 13.79 6.06 4.17 1.72 2.08 1.92 2.17 1.92 7.53 0.00 2.63 2.14 3.64 0.00 2.99 7.69 0.00 2.44 0.00 6.12 3.33 1.65 K intron_retention CG32276,I_chr3L_3199079_3199219 chr3L - chr3L_3198867_3198992 chr3L_3198866_3198867;chr3L_3198992_3198993 chr3L_3198752_3198866;chr3L_3198993_3199078 5.92 5.88 5.53 9.42 5.84 7.54 18.58 5.11 4.43 5.17 5.24 7.05 5.78 5.19 6.56 3.48 5.52 3.12 6.52 3.19 7.11 10.79 12.26 7.83 23.85 32.84 30.43 9.52 26.55 5.51 4.58 3.05 5.08 6.23 11.32 29.14 4.35 12.50 7.63 2.67 19.77 5.59 5.32 4.71 3.08 4.90 5.92 4.55 4.43 6.50 12.35 7.50 8.04 8.33 6.09 7.41 5.76 4.52 K intron_retention CG5886 chr3R + chr3R_21678297_21678538 chr3R_21678296_21678297;chr3R_21678538_21678539 chr3R_21678150_21678296;chr3R_21678539_21679759 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.06 1.85 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389762_2395659 chrX_2389762_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2393243;chrX_2393712_2394269;chrX_2394396_2395151;chrX_2395275_2395659 chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2393244_2393711;chrX_2394270_2394395;chrX_2395152_2395274 chrX_2389645_2389761;chrX_2395660_2395759 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention faf,RI_chr3R_27603474_27603893,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27602905_27603893 chr3R_27602904_27602905;chr3R_27603893_27603894 chr3R_27602789_27602904;chr3R_27603894_27603993 4.79 0.00 2.94 8.11 0.00 0.00 10.64 6.25 5.26 0.00 0.00 13.58 6.67 6.25 0.00 1.85 0.00 6.45 5.71 1.54 3.23 21.15 4.29 4.00 0.00 5.00 7.27 10.53 7.69 6.67 2.70 NA 0.00 4.92 0.00 5.13 2.13 3.85 6.12 6.35 NA 7.69 7.69 5.71 NA 0.00 0.00 4.65 6.06 0.00 4.55 6.38 10.00 NA 4.17 9.09 0.00 NA K jcn_only_AA Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5006553_5008568;chr2R_5006553_5008282;chr2R_5006553_5007804 chr2R_5006553_5008598 chr2R_5006405_5006552;chr2R_5008599_5008637 8.57 NA NA NA NA NA NA NA 4.76 NA NA 0.00 NA NA NA NA NA NA NA 4.17 NA NA 10.00 8.70 0.00 NA NA NA NA NA NA NA 9.52 NA NA NA 6.45 12.50 8.57 4.17 NA 0.00 NA 0.00 12.12 NA NA NA NA NA 8.70 NA NA NA NA 19.05 18.18 NA K intron_retention CG12404,I_chr2L_13003716_13003971 chr2L - chr2L_13000385_13000446 chr2L_13000384_13000385;chr2L_13000446_13000447 chr2L_13000180_13000384;chr2L_13000447_13000612 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rab23,I_chr3R_1508710_1508882 chr3R - chr3R_1508710_1511119 chr3R_1508709_1508710;chr3R_1511119_1511120 chr3R_1508610_1508709;chr3R_1511120_1511186 3.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA K intron_retention ATPsyn-Cf6,I_chr3R_19181282_19181355,I_chr3R_19181508_19181563,I_chr3R_19181524_19181702 chr3R - chr3R_19181292_19181355 chr3R_19181291_19181292;chr3R_19181355_19181356 chr3R_19181216_19181291;chr3R_19181356_19181424 2.10 2.06 1.69 6.46 2.78 1.84 3.95 4.82 2.12 3.35 1.88 2.64 2.42 2.00 2.90 2.05 1.95 2.59 1.75 1.74 2.26 5.53 2.81 2.01 3.26 4.07 5.99 3.40 9.59 1.43 4.76 1.66 1.76 1.50 2.10 2.37 2.97 2.30 2.05 1.94 4.20 2.08 2.26 1.49 1.69 1.36 1.48 1.49 2.68 3.25 2.33 4.04 1.59 1.80 2.01 1.59 1.03 0.69 K intron_retention RI_chr3R_7061265_7061322,CG31388 chr3R + chr3R_7065156_7065232 chr3R_7065155_7065156;chr3R_7065232_7065233 chr3R_7064833_7065155;chr3R_7065233_7065349 13.64 NA NA NA NA NA NA NA 27.27 NA NA 11.11 NA 7.69 NA NA NA NA NA 15.79 NA NA 13.64 NA NA NA 23.53 NA NA 7.14 16.67 NA NA NA NA 21.43 NA NA 6.67 4.55 NA 15.79 NA NA 12.50 17.65 14.29 23.53 17.65 12.50 15.00 NA 5.88 0.00 NA 13.33 6.67 NA K intron_retention CG5053 chr3R + chr3R_21489971_21490031 chr3R_21489970_21489971;chr3R_21490031_21490032 chr3R_21489660_21489970;chr3R_21490032_21491366 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA K cassette Nopp140,I_chr3L_21828330_21828566,I_chr3L_21828986_21829082 chr3L + chr3L_21827930_21828566 chr3L_21827930_21828173;chr3L_21828330_21828566 chr3L_21828174_21828329 chr3L_21827465_21827929;chr3L_21828567_21828666 17.35 24.18 13.98 16.28 15.52 16.28 13.86 16.54 16.46 19.19 19.30 15.58 12.33 17.14 14.89 9.82 13.79 20.88 12.82 19.16 20.37 6.02 22.97 22.50 30.00 16.25 29.03 26.77 12.30 19.17 9.90 10.87 16.39 14.29 15.31 21.78 27.19 21.43 17.99 14.57 17.88 17.84 13.89 18.75 23.74 16.13 23.64 12.39 17.35 19.63 20.54 20.00 22.82 29.58 12.50 20.79 28.67 16.18 K alternative_acceptor cni,RI_chr2L_16309575_16309999,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16310641_16310690;chr2L_16310637_16310690 chr2L_16310624_16310690 chr2L_16310691_16310700;chr2L_16310441_16310623 30.83 20.45 41.18 32.31 33.93 33.33 34.48 36.00 29.68 28.00 42.00 28.18 35.29 29.23 30.86 36.44 31.67 32.14 37.11 38.61 34.15 24.24 23.53 32.26 25.00 30.00 19.35 22.22 13.79 39.13 31.43 22.73 25.93 35.77 21.21 30.43 31.82 24.44 32.20 15.25 33.33 30.09 41.79 23.08 30.56 30.00 34.29 14.81 30.83 25.00 29.41 25.53 46.67 23.08 34.04 28.57 43.48 37.50 K alternative_donor CG31038,I_chr3R_25702915_25703648,I_chr3R_25705533_25722419,I_chr3R_25727788_25727905 chr3R + chr3R_25702915_25703648;chr3R_25702989_25703648;chr3R_25702895_25703648;chr3R_25702897_25703648;chr3R_25702901_25703648;chr3R_25702970_25703648 chr3R_25702838_25703648 chr3R_25703649_25703748;chr3R_25702831_25702837 8.33 14.29 9.09 16.67 NA 0.00 11.11 16.67 8.33 0.00 NA 16.67 0.00 14.29 14.29 0.00 NA 25.00 0.00 13.79 50.00 0.00 4.17 0.00 0.00 28.57 0.00 0.00 10.00 25.00 18.75 0.00 7.69 15.38 0.00 9.09 20.00 0.00 7.14 16.67 0.00 13.33 NA 27.27 0.00 0.00 0.00 8.33 7.69 22.22 9.09 22.22 0.00 0.00 11.11 0.00 25.00 0.00 K alternative_donor CG4389,I_chr2L_9576230_9576665 chr2L - chr2L_9576230_9576635;chr2L_9576230_9576517 chr2L_9576230_9576665 chr2L_9576130_9576229;chr2L_9576666_9576755 0.00 1.39 2.30 0.00 0.00 0.00 0.00 0.65 1.06 0.00 0.00 0.00 4.65 0.00 0.00 0.00 1.39 1.69 0.00 0.65 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 1.82 0.00 0.00 0.00 1.61 0.00 0.00 0.00 4.88 0.00 1.49 0.93 2.50 0.64 1.49 0.00 2.27 1.39 0.00 1.37 0.76 0.00 0.00 1.64 0.00 0.00 0.00 0.00 2.17 0.00 K intron_retention I_chr2R_17497464_17498249,CG18870,clt chr2R - chr2R_17503243_17503309 chr2R_17503242_17503243;chr2R_17503309_17503310 chr2R_17501694_17503242;chr2R_17503310_17504091 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 3.39 3.23 0.00 2.70 0.00 2.63 9.80 7.14 0.00 0.00 0.00 9.30 0.00 0.00 5.41 1.59 0.00 1.96 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL29,I_chr2R_17184688_17191389 chr2R + chr2R_17181667_17181735 chr2R_17181666_17181667;chr2R_17181735_17181736 chr2R_17181559_17181666;chr2R_17181736_17181757 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.02 0.03 0.00 0.00 K jcn_only_AD CG34148 chr3R - chr3R_17703800_17703967 chr3R_17703800_17703954 chr3R_17703658_17703799;chr3R_17703968_17704030 100.00 NA 100.00 NA NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA NA NA 100.00 93.33 95.12 100.00 NA 90.91 89.66 NA NA 89.66 100.00 100.00 NA 100.00 96.55 100.00 96.55 NA NA NA NA 95.45 96.97 100.00 98.00 100.00 NA 100.00 96.23 100.00 100.00 96.30 100.00 NA NA NA 95.45 100.00 100.00 98.28 97.92 K alternative_acceptor SelD,I_chr2R_10157899_10158045 chr2R - chr2R_10157680_10158045 chr2R_10157899_10158045 chr2R_10158046_10158145;chr2R_10157642_10157679 9.00 12.36 7.21 9.62 8.11 11.36 9.09 7.86 10.11 6.52 10.00 9.00 8.57 7.61 7.76 6.43 11.43 6.41 7.95 8.00 6.56 11.43 8.55 14.47 11.59 7.00 8.54 12.73 17.95 12.31 5.00 13.04 9.84 6.99 9.86 2.82 11.11 10.94 11.00 11.40 8.00 8.78 12.12 13.21 10.87 8.05 7.61 10.26 7.35 9.09 8.57 9.59 6.67 8.00 9.01 7.29 9.86 6.33 N intron_retention Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11837971_11838672 chr2R_11837970_11837971;chr2R_11838672_11838673 chr2R_11837919_11837970;chr2R_11838673_11838762 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 86.67 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA K alternative_acceptor CCS,I_chr2R_6009946_6010014 chr2R - chr2R_6009964_6010014;chr2R_6009951_6010014 chr2R_6009946_6010014 chr2R_6010015_6010040;chr2R_6009884_6009945 0.00 0.00 0.00 7.69 NA 0.00 9.09 0.00 0.00 0.00 NA 6.67 NA 0.00 NA 0.00 0.00 0.00 20.00 4.76 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 14.29 NA 0.00 0.00 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 NA 6.67 NA 8.33 0.00 7.14 11.11 14.29 7.69 8.33 0.00 0.00 14.29 10.00 0.00 0.00 0.00 12.50 K jcn_only_AA CG11403,I_chrX_1132012_1132060 chrX - chrX_1131997_1132060 chrX_1132012_1132060 chrX_1132061_1132160;chrX_1131912_1131996 2.56 NA 5.00 NA NA NA 4.17 NA 0.00 NA NA 4.00 NA NA NA NA NA NA NA 5.66 NA 4.76 0.00 0.00 NA NA NA NA NA NA NA NA 9.09 0.00 NA NA NA NA 0.00 0.00 NA 4.76 NA NA 4.00 NA NA NA 2.56 NA NA NA NA 0.00 NA 0.00 NA NA K intron_retention sec23,I_chr3R_1474873_1475080,I_chr3R_1477727_1478102 chr3R + chr3R_1477724_1478102 chr3R_1477723_1477724;chr3R_1478102_1478103 chr3R_1477703_1477723;chr3R_1478103_1478202 26.67 17.39 50.00 46.15 6.25 NA 64.29 50.00 31.82 NA NA 24.44 25.93 NA 50.00 63.64 NA 16.67 30.77 20.69 NA 10.20 34.62 20.00 24.14 NA 28.00 23.68 33.33 26.67 41.67 15.38 20.00 63.64 31.25 NA 18.92 20.00 13.89 81.82 16.67 36.84 NA 56.25 35.71 44.44 20.00 NA 30.77 9.52 33.33 25.00 28.57 25.00 NA 22.22 20.00 NA K cassette Fhos,CE_chr3L_8759730_8775647,I_chr3L_8779538_8779726 chr3L + chr3L_8790327_8791220 chr3L_8790327_8790789;chr3L_8790922_8791220 chr3L_8790790_8790921 chr3L_8790100_8790326;chr3L_8791221_8791637 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA 2.04 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr2R_19265701_19270570,CG30414,CG3530,CG3520 chr2R - chr2R_19272170_19272224 chr2R_19272169_19272170;chr2R_19272224_19272225 chr2R_19271805_19272169;chr2R_19272225_19272472 9.45 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA 20.00 NA 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA 11.76 23.08 K jcn_only_AD noncoding_18450,CG6982,CG17618,CG17618_CG6982 chr3R + chr3R_18552824_18554564 chr3R_18553214_18554564 chr3R_18554565_18554629;chr3R_18552763_18552823 4.17 0.00 5.13 3.17 NA 2.78 3.45 8.33 4.17 NA NA 7.58 0.00 1.89 2.38 2.53 0.00 6.06 3.70 6.52 7.41 1.92 8.20 8.00 NA 6.45 5.26 4.17 4.55 0.00 10.71 5.00 1.61 2.74 0.00 5.77 NA NA NA 3.08 2.94 7.14 8.00 4.65 0.00 8.51 4.65 2.38 4.49 NA 12.90 12.00 0.00 4.55 1.75 0.00 0.00 2.70 K intron_retention KrT95D,I_chr3R_19825840_19825904 chr3R - chr3R_19828270_19829137 chr3R_19828269_19828270;chr3R_19829137_19829138 chr3R_19828144_19828269;chr3R_19829138_19829486 1.67 0.00 2.02 4.49 0.00 0.94 1.39 3.70 2.79 1.68 3.57 2.72 6.67 3.16 2.94 4.62 0.00 1.30 2.47 1.41 4.21 0.83 0.79 1.18 4.00 3.16 4.65 5.08 1.67 1.50 3.67 1.86 0.94 3.33 0.69 5.51 1.77 2.61 1.66 0.93 0.00 0.97 0.00 0.53 0.00 0.46 0.00 1.36 2.86 1.72 2.26 2.65 0.00 0.00 4.24 0.00 0.00 0.00 K cassette CG7638,RI_chr3L_11104220_11104524 chr3L + chr3L_11104220_11104524 chr3L_11104220_11104287;chr3L_11104463_11104524 chr3L_11104288_11104462 chr3L_11104120_11104219;chr3L_11104525_11104624 99.06 100.00 98.00 98.84 97.73 100.00 97.01 98.59 97.09 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 95.83 99.06 97.73 100.00 93.75 98.25 100.00 97.92 93.33 92.11 100.00 100.00 97.87 100.00 100.00 98.55 100.00 96.97 98.44 98.04 98.31 100.00 100.00 97.59 97.30 100.00 97.78 100.00 100.00 100.00 97.47 97.78 100.00 97.62 100.00 100.00 100.00 98.04 98.18 100.00 K jcn_only_AA Fibp,RI_chr3L_19810268_19810326 chr3L - chr3L_19809762_19809819;chr3L_19809775_19809819 chr3L_19809780_19809819 chr3L_19809820_19809920;chr3L_19809693_19809761 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.38 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 2.63 0.00 3.12 2.86 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.57 0.00 0.00 0.00 K intron_retention Inos,I_chr2R_3344353_3345211,noncoding_4874 chr2R - chr2R_3344353_3345211 chr2R_3344352_3344353;chr2R_3345211_3345212 chr2R_3344253_3344352;chr2R_3345212_3345260 82.35 76.47 NA 86.67 NA 78.57 88.89 83.33 64.29 90.00 61.54 81.25 NA 100.00 90.00 100.00 NA 78.57 100.00 88.24 NA 98.21 83.33 76.47 57.14 90.91 82.61 90.00 88.71 84.62 52.94 78.26 82.35 72.22 84.62 87.50 94.12 76.47 67.86 85.37 76.47 75.86 NA 95.24 75.00 85.71 84.21 96.77 65.00 72.00 73.08 NA NA 76.47 73.33 72.22 55.56 77.78 K intron_retention cul-2,RI_chr2L_21657668_21657832,noncoding_4226,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21656588_21658556 chr2L_21656587_21656588;chr2L_21658556_21658557 chr2L_21656493_21656587;chr2L_21658557_21658854 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 96.30 100.00 100.00 92.31 NA 100.00 100.00 NA 100.00 100.00 NA NA 94.44 100.00 100.00 NA NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA NA NA K intron_retention noncoding_23420,hep chrX - chrX_12978604_12979628 chrX_12978603_12978604;chrX_12979628_12979629 chrX_12978560_12978603;chrX_12979629_12979784 6.19 0.00 13.33 4.26 6.25 17.65 9.62 6.67 6.49 NA 14.29 8.33 4.55 8.33 23.53 5.26 8.33 0.00 4.55 6.12 NA 0.00 0.00 3.45 12.50 5.56 10.00 6.67 0.00 6.06 10.71 NA 14.29 8.51 0.00 12.50 0.00 0.00 6.67 3.23 7.14 11.54 0.00 3.23 NA 0.00 8.70 11.76 5.45 8.00 6.12 0.00 0.00 NA 6.67 0.00 0.00 11.11 K intron_retention sar1,I_chr3R_18185148_18185246 chr3R + chr3R_18182472_18183252 chr3R_18182471_18182472;chr3R_18183252_18183253 chr3R_18182460_18182471;chr3R_18183253_18183393 3.05 3.36 1.83 3.05 2.19 1.89 2.77 1.20 2.61 0.00 2.24 1.89 2.48 0.67 2.54 0.94 0.69 1.14 4.05 2.10 3.95 15.25 4.95 2.56 6.15 1.08 9.09 10.42 12.90 3.77 4.21 4.12 4.60 2.02 2.99 3.28 2.11 3.17 3.23 5.03 10.00 1.17 0.60 6.84 5.08 1.64 3.31 5.48 1.44 2.33 4.46 3.80 3.12 3.12 1.89 5.13 2.01 4.58 K intron_retention CG17471,RI_chr4_1213397_1214333,RI_chr4_1213397_1216053,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1213279_1213331 chr4_1213278_1213279;chr4_1213331_1213332 chr4_1213122_1213278;chr4_1213332_1213341 0.00 0.00 3.70 16.00 NA 0.00 9.72 5.80 4.00 NA NA 9.43 0.00 2.56 0.00 4.49 4.17 9.09 0.00 4.62 NA NA 15.00 0.00 11.76 NA 0.00 NA NA 0.00 3.23 0.00 0.00 2.94 8.57 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 2.60 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 K jcn_only_AA RI_chrX_1796525_1796585,mip130,I_chrX_1820956_1821011,CG11596 chrX + chrX_1822614_1823084 chrX_1822614_1823033 chrX_1822367_1822613;chrX_1823085_1823203 93.94 90.00 100.00 98.11 95.56 88.89 96.55 97.67 97.22 93.10 98.21 95.50 100.00 98.04 98.61 95.89 100.00 92.54 95.56 97.92 89.13 88.00 88.51 90.00 95.00 100.00 98.15 92.11 91.43 89.74 94.19 89.19 90.59 96.55 100.00 89.58 89.47 89.09 93.94 86.36 85.19 94.23 98.18 92.06 94.12 89.19 92.98 89.71 94.44 91.23 85.33 95.45 77.97 94.74 97.50 90.91 92.75 82.35 K alternative_donor noncoding_18450,CG6982,CG17618,CG17618_CG6982 chr3R + chr3R_18552824_18554564 chr3R_18553214_18554564 chr3R_18554565_18554629;chr3R_18552763_18552823 14.43 4.65 12.90 12.00 20.00 10.71 14.58 14.89 15.25 NA 25.00 15.38 8.00 7.32 6.25 13.85 15.00 18.52 7.32 12.68 21.74 15.91 16.33 15.00 18.75 16.00 13.33 10.53 50.00 17.95 14.29 17.65 20.00 10.53 11.76 14.29 21.43 16.67 20.00 13.21 11.11 15.56 10.53 14.29 7.41 16.22 11.76 26.83 11.43 18.75 11.36 15.79 11.76 6.25 12.77 12.50 15.38 25.71 K jcn_only_AA lt,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22832567_22832623 chr2L_22832567_22832618 chr2L_22832499_22832566;chr2L_22832624_22832723 97.22 91.86 98.81 98.47 96.61 92.22 95.06 96.00 96.15 98.31 96.92 95.17 97.59 95.40 98.02 97.37 100.00 98.53 96.77 98.40 96.00 97.22 97.65 96.00 98.04 100.00 94.87 93.75 95.70 96.47 94.67 96.43 97.54 95.12 100.00 96.92 98.08 100.00 98.04 95.67 97.16 95.56 98.08 97.03 94.37 97.60 98.48 97.20 96.60 100.00 97.67 100.00 100.00 98.86 95.83 97.73 99.11 98.14 K alternative_donor exd chrX + chrX_15887147_15887504;chrX_15886821_15887504;chrX_15886888_15887504;chrX_15886827_15887504;chrX_15886958_15887504;chrX_15886802_15887504;chrX_15887006_15887504 chrX_15886884_15887504 chrX_15887505_15887806;chrX_15886739_15886801 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG12404,I_chr2L_12994238_12995342,I_chr2L_12995561_12997461 chr2L - chr2L_12994238_12997461 chr2L_12994238_12995342 chr2L_12994138_12994237;chr2L_12997462_12997561 0.00 0.00 0.56 0.00 0.00 0.00 0.43 0.43 0.00 0.70 1.58 0.00 0.00 0.00 0.50 0.00 0.76 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.47 0.58 0.64 0.52 0.00 0.00 0.00 0.00 0.36 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 K alternative_donor sd,noncoding_23930,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15706568_15707633;chrX_15706564_15707633 chrX_15706472_15707633 chrX_15707634_15707635;chrX_15706468_15706471 14.29 NA 0.00 22.22 12.50 10.00 33.33 14.29 19.23 9.09 28.57 8.70 NA 25.00 0.00 46.67 14.29 20.00 12.50 23.33 8.33 7.69 21.43 21.43 0.00 14.29 38.46 21.05 10.53 13.64 11.11 7.69 17.39 11.11 25.00 0.00 11.11 14.29 28.57 19.05 10.00 12.50 37.50 33.33 11.11 18.18 14.29 3.23 6.67 NA 36.36 14.29 14.29 NA 18.18 14.29 NA 11.76 K cassette eag chrX + chrX_14894862_14898067 chrX_14894862_14896147;chrX_14896436_14898067 chrX_14896148_14896435 chrX_14894660_14894861;chrX_14898068_14898097 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA 85.71 NA NA NA NA 100.00 NA 100.00 83.33 NA NA NA NA 100.00 NA 100.00 NA NA NA NA 85.71 NA 100.00 NA NA NA NA NA NA 100.00 N cassette egr,I_chr2R_5970999_5971058 chr2R + chr2R_5966688_5970146 chr2R_5966688_5969011;chr2R_5969138_5970146 chr2R_5969012_5969137 chr2R_5965882_5966687;chr2R_5970147_5970472 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.27 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG3651,I_chr2L_22124217_22124661,I_chr2L_22124698_22124781 chr2L + chr2L_22124217_22124781 chr2L_22124216_22124217;chr2L_22124781_22124782 chr2L_22124117_22124216;chr2L_22124782_22124881 0.81 0.00 1.80 0.00 0.00 0.00 1.29 1.32 0.81 0.00 0.00 2.13 0.00 1.98 0.00 1.22 0.00 0.00 0.00 0.98 2.50 4.05 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 1.38 0.00 1.82 2.27 0.00 0.00 0.91 0.00 1.33 1.34 0.48 2.86 0.00 1.24 0.92 2.44 0.87 1.73 1.29 1.38 0.00 3.39 0.00 0.72 2.99 3.17 2.34 K jcn_only_AD Ca-P60A,RI_chr2R_19820338_19820541,I_chr2R_19820338_19821424,CEI_chr2R_19820338_19821830,I_chr2R_19820338_19823289 chr2R - chr2R_19820338_19820817;chr2R_19820338_19820955;chr2R_19820338_19820781 chr2R_19820338_19820765 chr2R_19820238_19820337;chr2R_19820956_19820969 10.71 10.61 11.16 11.20 7.82 13.79 12.30 11.32 9.07 13.30 9.19 9.57 17.01 10.71 8.58 14.42 9.34 9.42 10.38 9.76 10.61 9.32 14.98 8.63 6.82 11.35 17.59 15.00 16.40 9.36 7.69 15.89 11.44 12.53 14.79 9.04 7.98 13.91 9.34 10.70 7.60 10.71 8.47 8.68 12.77 12.63 11.35 13.21 13.32 10.75 13.71 17.07 10.45 6.25 11.30 11.02 9.92 7.87 K intron_retention CG8451 chr2L - chr2L_8203470_8203526 chr2L_8203469_8203470;chr2L_8203526_8203527 chr2L_8203314_8203469;chr2L_8203527_8203636 2.33 0.00 4.76 0.00 0.00 0.00 2.33 3.70 3.12 0.00 0.00 3.08 0.00 6.45 4.55 6.90 2.70 0.00 0.00 7.79 4.44 10.71 7.46 3.08 12.50 5.56 8.00 10.53 0.00 0.00 6.25 0.00 1.72 0.00 0.00 7.14 1.47 3.77 3.03 3.08 0.00 0.00 3.23 0.00 0.00 0.00 0.00 2.13 4.69 3.12 7.14 0.00 0.00 12.20 0.00 0.00 6.06 0.00 K intron_retention TepIV,EI_chr2L_19548696_19549582 chr2L + chr2L_19553916_19553969 chr2L_19553915_19553916;chr2L_19553969_19553970 chr2L_19553362_19553915;chr2L_19553970_19556092 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 K jcn_only_AD PGRP-LC,E_chr3L_9335847_9338977 chr3L + chr3L_9338225_9340739;chr3L_9340350_9340739 chr3L_9338168_9340739 chr3L_9340740_9340757 20.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 32.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD E(bx),I_chr3L_236428_236553,RI_chr3L_236428_236858,RI_chr3L_236451_239054,RI_chr3L_236508_236862,I_chr3L_239186_239264,I_chr3L_246324_246699 chr3L - chr3L_236428_236553;chr3L_236428_236858;chr3L_236428_239054 chr3L_236428_236862 chr3L_236408_236427 11.68 9.62 6.67 16.44 14.81 10.71 18.37 10.98 11.88 16.67 14.81 16.67 4.17 12.50 7.69 9.43 15.62 18.42 6.12 13.27 4.55 33.33 7.89 12.50 6.90 16.00 6.67 3.23 15.00 7.89 28.21 12.00 13.73 10.47 19.51 25.00 7.55 8.70 2.94 9.21 NA 20.29 18.75 11.11 8.33 18.75 10.34 20.00 18.68 17.24 11.48 6.25 11.11 0.00 11.90 8.33 11.11 19.23 K intron_retention lin19 chr2R + chr2R_3807453_3807508 chr2R_3807452_3807453;chr2R_3807508_3807509 chr2R_3806406_3807452;chr2R_3807509_3808289 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 3.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG7272 chr3L + chr3L_15496343_15496413 chr3L_15496343_15496407 chr3L_15496274_15496342;chr3L_15496414_15496474 100.00 100.00 100.00 98.00 100.00 100.00 95.45 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 92.86 98.11 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 96.97 96.67 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 98.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 97.78 97.62 100.00 96.88 100.00 K intron_retention RI_chr3L_707623_707678,CkIIalpha-i3,CG13896,RI_chr3L_711692_711744 chr3L - chr3L_711692_711744 chr3L_711691_711692;chr3L_711744_711745 chr3L_711592_711691;chr3L_711745_711774 93.09 NA NA NA NA NA 90.00 NA 94.12 NA NA NA 93.33 NA NA 100.00 NA 100.00 86.67 95.65 NA NA NA NA NA NA NA NA NA NA NA NA NA 91.67 NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA 92.86 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG17715,I_chr2L_22741825_22741944,RI_chr2L_22742106_22742215,I_chr2L_22742106_22746918 chr2L + chr2L_22741988_22742055 chr2L_22741988_22742037 chr2L_22741949_22741987;chr2L_22742056_22742105 94.12 88.00 97.14 97.37 95.24 92.59 83.72 98.00 92.86 100.00 94.74 90.74 81.58 96.67 94.12 95.31 86.67 93.33 88.57 92.31 95.24 92.86 96.43 97.22 100.00 88.00 90.62 100.00 94.12 100.00 92.06 95.83 95.65 98.28 95.65 83.33 100.00 100.00 87.50 87.50 90.91 88.89 89.66 85.19 94.12 92.31 95.24 95.00 96.08 92.11 93.55 90.48 95.00 100.00 94.59 93.33 91.18 97.67 K intron_retention dome,I_chrX_19573364_19573474 chrX - chrX_19572215_19572296 chrX_19572214_19572215;chrX_19572296_19572297 chrX_19570542_19572214;chrX_19572297_19573363 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 5.56 0.00 0.00 6.12 0.00 0.00 0.00 0.00 5.26 4.76 7.41 5.71 6.25 0.00 1.64 1.67 2.56 0.00 0.00 3.45 7.69 0.00 0.00 0.00 0.00 4.44 2.70 0.00 0.00 0.00 0.00 3.77 0.00 5.17 0.00 2.56 0.00 0.00 0.00 4.17 1.96 1.96 4.17 0.00 0.00 0.00 6.45 0.00 2.70 4.65 N jcn_only_AA l(1)G0196,I_chrX_21890195_21895316,I_chrX_21900456_21904601 chrX + chrX_21897231_21897326 chrX_21897231_21897314 chrX_21897164_21897230;chrX_21897327_21897813 16.66 NA NA NA NA NA 0.00 NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Aats-lys chrX - chrX_9502326_9502454 chrX_9502325_9502326;chrX_9502454_9502455 chrX_9501662_9502325;chrX_9502455_9502523 0.00 0.00 NA NA NA NA NA NA 4.35 NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 15.00 0.00 0.00 0.00 0.00 NA 0.00 10.53 0.00 NA NA 0.00 NA NA NA NA NA 9.52 0.00 0.00 5.26 NA 0.00 NA NA NA 0.00 7.69 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA K jcn_only_AA Arf102F,RI_chr4_1144958_1145393,I_chr4_1152220_1152710,I_chr4_1152585_1152687 chr4 + chr4_1145520_1145587 chr4_1145520_1145575 chr4_1145453_1145519;chr4_1145588_1145637 100.00 100.00 99.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.62 100.00 99.26 100.00 100.00 99.07 99.12 100.00 99.46 98.95 100.00 100.00 100.00 100.00 100.00 98.96 100.00 98.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.39 100.00 99.65 99.26 100.00 99.02 100.00 97.94 100.00 100.00 98.81 100.00 98.41 100.00 100.00 99.31 100.00 100.00 100.00 K jcn_only_AA CG3803,RI_chr2R_19840910_19840971 chr2R - chr2R_19840910_19840971 chr2R_19840914_19840971 chr2R_19840972_19841040;chr2R_19840850_19840909 100.00 100.00 96.55 97.06 95.65 95.00 100.00 100.00 98.21 100.00 NA 97.67 100.00 100.00 100.00 100.00 96.00 NA NA 100.00 100.00 100.00 91.67 91.67 NA 100.00 90.48 NA NA NA 96.88 95.65 NA 96.08 NA NA 100.00 100.00 96.88 100.00 100.00 100.00 NA NA 100.00 100.00 96.00 100.00 98.18 NA 100.00 NA NA NA 100.00 100.00 NA 95.24 K alternative_donor Rip11,E_chrX_18532733_18533695,RI_chrX_18530353_18530870,RI_chrX_18530742_18530870,RI_chrX_18544139_18544185 chrX - chrX_18530907_18531445 chrX_18530907_18531363 chrX_18530871_18530906;chrX_18531446_18531606 10.67 9.79 7.87 7.79 9.28 20.88 9.17 10.51 6.79 9.17 21.95 12.67 8.29 9.04 11.70 8.08 8.40 9.94 8.43 11.31 22.07 10.78 13.62 11.00 17.06 14.61 14.63 14.74 11.59 8.83 9.22 8.99 10.34 8.19 12.06 17.36 10.82 12.57 15.66 11.29 10.67 13.28 5.69 8.71 13.01 9.22 14.29 9.41 11.66 9.87 13.04 8.33 14.53 12.05 9.48 10.55 10.69 7.13 K intron_retention pod1 chrX + chrX_6703440_6703517 chrX_6703439_6703440;chrX_6703517_6703518 chrX_6703407_6703439;chrX_6703518_6703690 0.00 0.00 NA 4.55 NA NA 3.70 3.12 0.00 NA NA 4.76 5.88 7.41 NA NA 0.00 0.00 0.00 8.33 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA 0.00 NA 0.00 3.23 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 5.88 NA 0.00 9.09 NA 0.00 NA NA NA 9.09 NA NA NA K intron_retention cic chr3R + chr3R_16125354_16125422 chr3R_16125353_16125354;chr3R_16125422_16125423 chr3R_16125190_16125353;chr3R_16125423_16125515 0.00 0.00 1.43 0.00 1.19 0.00 0.00 0.53 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 2.22 2.38 0.33 0.00 0.00 0.00 0.00 0.00 0.00 3.03 1.92 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG16971,I_chr3L_225856_225909,I_chr3L_225919_225983,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_225919_226219;chr3L_225919_226004 chr3L_225919_225983 chr3L_225910_225918;chr3L_226220_226256 38.39 45.22 37.82 NA 41.20 38.25 25.37 NA 38.39 30.95 42.80 39.17 38.96 31.82 51.85 37.76 39.58 36.75 24.85 23.11 41.35 56.33 44.17 34.87 42.07 51.57 47.81 39.72 35.52 35.88 37.72 32.73 28.99 37.74 53.77 NA 36.83 39.18 32.37 24.65 50.34 22.76 52.56 45.24 39.87 31.27 37.20 25.36 25.30 39.01 42.32 46.15 36.41 46.51 22.00 NA 45.80 58.16 K jcn_only_AD R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083458_8089184;chr2L_8083522_8089184;chr2L_8083588_8089184;chr2L_8083637_8089184 chr2L_8083687_8089184 chr2L_8089185_8089284;chr2L_8083444_8083457 0.00 NA 0.00 0.00 NA 0.00 1.20 0.00 0.00 0.00 NA 3.33 2.13 2.38 0.00 0.83 0.00 0.00 1.69 0.00 NA 0.00 0.00 NA NA 3.33 NA NA 0.00 NA 0.00 NA 2.22 1.32 NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 1.41 0.00 NA NA NA NA NA 4.17 NA NA 2.22 K alternative_acceptor tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959283_5960158 chr3R_5959310_5960158 chr3R_5960159_5960224;chr3R_5958937_5959282 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 93.33 NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA NA 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention Iswi chr2R + chr2R_8524243_8524348 chr2R_8524242_8524243;chr2R_8524348_8524349 chr2R_8524226_8524242;chr2R_8524349_8524495 10.53 7.41 5.26 16.67 4.08 7.14 16.00 12.86 4.35 17.65 0.00 9.38 10.81 16.67 9.52 10.00 4.44 6.67 8.93 9.21 10.71 22.22 10.26 7.41 29.41 33.33 19.05 NA 46.15 10.53 13.33 NA 20.00 10.14 10.00 40.00 9.76 19.05 11.11 9.09 NA 9.59 7.41 10.26 NA 12.50 4.76 16.67 12.68 16.67 3.45 13.33 NA NA 12.24 15.79 5.00 11.76 K jcn_only_AA CG6664 chr3L - chr3L_17008359_17008842 chr3L_17008367_17008842 chr3L_17008843_17008976;chr3L_17008241_17008358 96.00 100.00 98.21 96.67 93.94 94.83 95.65 98.75 96.04 97.06 98.18 94.06 97.96 91.11 97.30 92.16 97.06 95.45 98.21 95.37 96.00 96.55 95.24 100.00 97.78 98.39 97.47 86.79 97.14 93.59 93.62 96.23 95.59 96.30 96.00 100.00 95.65 93.65 91.53 96.43 98.04 94.17 100.00 92.11 94.92 95.18 95.45 98.29 98.98 96.49 95.71 92.31 95.16 97.50 95.89 91.38 96.49 95.74 K intron_retention Cip4,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4324448_4324921 chr3L_4324447_4324448;chr3L_4324921_4324922 chr3L_4324284_4324447;chr3L_4324922_4324996 34.15 27.96 29.91 28.03 43.08 33.33 42.94 29.28 34.90 66.67 33.33 27.95 48.21 36.26 33.66 29.50 35.06 64.84 43.33 28.28 37.70 23.81 35.97 38.64 30.69 30.08 45.88 46.15 42.86 35.71 39.39 30.00 23.86 30.71 33.87 25.00 38.46 34.83 30.37 17.80 33.33 33.52 31.34 35.37 24.29 36.11 40.00 39.51 34.15 36.00 34.21 39.13 32.86 26.00 32.43 26.67 40.00 40.58 K alternative_acceptor CG30122,I_chr2R_14526123_14526189 chr2R - chr2R_14520630_14520696 chr2R_14520633_14520696 chr2R_14520697_14520868;chr2R_14520624_14520629 71.79 73.24 78.22 75.81 72.62 72.38 73.45 73.91 69.73 58.97 74.68 66.99 70.97 71.79 70.49 67.74 68.85 73.81 75.00 73.13 78.21 72.94 70.47 69.66 71.90 75.00 71.53 68.22 68.10 74.69 69.75 74.19 69.23 72.86 77.19 69.62 68.52 65.79 72.03 70.37 72.55 71.64 71.01 66.07 73.44 69.23 70.81 74.38 74.35 67.76 74.54 70.79 66.67 72.22 73.28 74.56 67.32 69.23 K alternative_acceptor CG1109,CG1347 chr3R + chr3R_1486548_1486646 chr3R_1486548_1486633 chr3R_1486391_1486547;chr3R_1486647_1486970 100.00 90.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 91.67 100.00 88.89 NA 95.83 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 93.33 100.00 100.00 86.36 100.00 100.00 95.45 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 87.50 100.00 100.00 100.00 93.33 92.86 100.00 K intron_retention CG12746,I_chr3R_1391015_1391809,I_chr3R_1391178_1391809,I_chr3R_1391690_1391809,Rheb chr3R + chr3R_1391176_1391809 chr3R_1391175_1391176;chr3R_1391809_1391810 chr3R_1391078_1391175;chr3R_1391810_1391909 40.00 30.77 NA 53.33 NA NA 66.67 42.86 29.63 NA 38.46 35.00 NA NA NA 60.00 NA NA NA 56.25 NA 50.00 36.36 35.71 NA NA 40.00 NA NA NA NA NA 30.77 64.29 NA NA 37.50 46.67 43.75 53.33 NA 39.13 NA 58.82 NA NA 35.29 NA 40.00 35.29 42.11 66.67 NA 37.50 33.33 40.00 31.58 NA K jcn_only_AD CG14980,Ubi-p63E chr3L - chr3L_3898798_3898870 chr3L_3898798_3898861 chr3L_3898004_3898797;chr3L_3898871_3898939 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 90.91 NA NA NA 100.00 NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 96.15 NA 100.00 NA NA NA 100.00 NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA K alternative_donor CG15715,RI_chr3L_15829349_15830356,I_chr3L_15830026_15830356,RI_chr3L_15830030_15830191,RI_chr3L_15830229_15830356 chr3L - chr3L_15830030_15830356 chr3L_15830030_15830191 chr3L_15830007_15830029;chr3L_15830357_15830456 1.79 3.92 0.00 1.22 0.00 0.00 3.39 0.00 1.19 0.00 0.00 0.98 2.86 0.00 0.00 1.10 2.44 2.78 1.72 2.04 0.00 5.00 1.32 1.35 2.27 2.17 1.47 5.00 0.00 5.88 0.00 4.55 0.00 0.00 2.38 0.00 4.76 1.79 2.08 3.08 0.00 1.00 2.13 4.17 5.13 2.78 2.17 3.45 1.48 1.79 2.90 2.70 3.51 1.67 0.00 1.37 2.35 2.78 K alternative_acceptor CG2698,I_chr3R_3828169_3828941,I_chr3R_3828880_3828941,I_chr3R_3829483_3829715,I_chr3R_3830586_3830981 chr3R + chr3R_3829483_3829697;chr3R_3829483_3829709;chr3R_3829483_3829721 chr3R_3829483_3829555 chr3R_3829383_3829482;chr3R_3829722_3829815 35.90 31.71 35.71 31.75 26.92 32.14 30.16 32.35 40.85 33.33 25.00 37.68 41.18 35.14 25.49 36.67 28.00 52.17 29.41 35.80 39.39 57.14 31.25 40.35 50.00 30.95 25.00 33.33 41.94 38.46 47.83 35.90 63.16 30.77 42.11 46.81 30.00 31.82 33.93 43.04 52.38 28.41 35.00 36.21 28.85 42.86 33.33 46.15 39.19 40.68 38.10 37.50 39.29 36.84 32.69 38.46 26.00 44.68 K jcn_only_AA CG6838,I_chr3L_22708171_22708254,I_chr3L_22709306_22709668 chr3L - chr3L_22708171_22708254 chr3L_22708190_22708254 chr3L_22708255_22708354;chr3L_22708071_22708170 99.28 97.52 97.47 100.00 98.86 100.00 98.37 99.18 99.02 100.00 100.00 97.86 98.85 100.00 98.20 100.00 100.00 100.00 100.00 98.54 100.00 100.00 98.43 96.97 98.92 100.00 98.63 97.56 97.52 100.00 98.59 100.00 98.69 99.13 100.00 100.00 99.46 99.28 99.47 99.01 100.00 98.44 100.00 98.03 99.28 100.00 99.33 98.81 97.78 100.00 99.36 100.00 100.00 99.08 98.95 100.00 97.67 100.00 K intron_retention CG31999,I_chr4_236187_238030,I_chr4_236686_238031,I_chr4_238453_238873,I_chr4_238809_238873,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_238121_238873 chr4_238120_238121;chr4_238873_238874 chr4_238032_238120;chr4_238874_238973 0.00 0.00 0.00 5.06 0.00 0.00 1.06 2.00 0.00 0.00 0.00 1.49 0.00 1.45 1.72 1.98 0.00 0.00 0.00 1.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.81 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 1.92 0.00 1.52 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 2.70 K alternative_acceptor I_chr3R_23069667_23070365,CG5987 chr3R - chr3R_23074201_23074263 chr3R_23074218_23074263 chr3R_23074264_23074804;chr3R_23074073_23074200 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA NA 1.79 NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 4.35 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 3.85 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 7.14 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11137,I_chr3L_22863251_22864866,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22860955_22861006 chr3L_22860954_22860955;chr3L_22861006_22861007 chr3L_22860514_22860954;chr3L_22861007_22861136 0.00 3.08 0.00 0.00 0.00 0.00 1.28 1.98 1.92 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 18.92 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 1.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG6569,RI_chr3R_17693077_17693126,I_chr3R_17694702_17694760 chr3R - chr3R_17692987_17693126 chr3R_17693049_17693126 chr3R_17693127_17693226;chr3R_17692977_17692986 4.00 4.55 NA NA NA NA 5.41 3.33 0.00 NA NA NA NA NA NA 4.35 NA 4.35 5.00 0.00 NA 2.86 NA 5.00 NA NA NA 0.00 NA NA 4.29 NA NA NA NA NA 0.00 NA 0.00 NA NA 11.11 NA NA NA NA NA NA 4.00 NA 0.00 NA NA NA NA NA NA NA K alternative_donor CoRest,I_chrX_19416977_19417035 chrX + chrX_19416603_19417035;chrX_19416977_19417035;chrX_19416431_19417035;chrX_19416423_19417035 chrX_19416669_19417035 chrX_19417036_19417135;chrX_19416201_19416422 22.22 17.19 30.56 23.08 25.00 19.51 23.68 23.08 28.40 20.59 26.47 15.00 17.65 23.53 22.22 21.28 20.83 23.81 25.00 25.77 27.27 22.06 18.68 15.19 18.18 22.64 23.44 19.23 22.45 24.00 20.93 19.51 25.45 25.00 18.18 23.08 18.69 14.61 19.05 23.53 17.39 22.47 21.43 16.00 12.50 21.57 15.38 20.69 23.46 24.49 15.96 18.18 23.68 20.83 24.53 22.73 31.71 23.91 K alternative_donor cbs,I_chr2R_9340506_9340593,I_chr2R_9340512_9340593 chr2R + chr2R_9340512_9340593;chr2R_9340506_9340593 chr2R_9340536_9340593 chr2R_9340594_9340693;chr2R_9340412_9340505 88.57 95.65 84.62 90.48 92.31 100.00 88.89 88.57 87.04 83.33 85.71 92.68 77.27 87.50 80.77 89.74 82.35 80.00 92.59 88.68 92.31 75.00 93.55 93.55 85.71 94.44 90.62 91.67 85.00 86.96 83.72 92.31 94.74 91.11 71.43 95.24 90.48 85.00 86.67 90.62 78.79 86.67 86.67 83.33 85.71 88.37 86.96 94.74 97.22 87.18 89.19 80.95 100.00 88.89 88.89 79.55 80.95 96.55 K intron_retention I_chr2L_6323791_6325172,Gef26,I_chr2L_6330719_6330770 chr2L + chr2L_6325298_6325356 chr2L_6325297_6325298;chr2L_6325356_6325357 chr2L_6325173_6325297;chr2L_6325357_6325602 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 3.85 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K intron_retention CG8026,I_chr2R_5074640_5074701 chr2R - chr2R_5076726_5078780 chr2R_5076725_5076726;chr2R_5078780_5078781 chr2R_5076572_5076725;chr2R_5078781_5079538 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 1.94 5.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Prosalpha7 chr2R - chr2R_5734411_5734577 chr2R_5734410_5734411;chr2R_5734577_5734578 chr2R_5734141_5734410;chr2R_5734578_5734697 0.00 0.83 0.79 2.96 0.00 0.00 0.00 0.55 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.33 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 1.08 0.91 2.30 0.00 0.00 0.35 0.00 0.00 0.00 1.57 0.00 0.00 0.93 1.41 0.00 1.32 0.00 0.30 K intron_retention CG3091,I_chrX_2147635_2147990 chrX - chrX_2147282_2147349 chrX_2147281_2147282;chrX_2147349_2147350 chrX_2146949_2147281;chrX_2147350_2147431 13.46 16.39 20.37 25.00 12.73 8.82 22.95 10.28 12.69 16.67 21.74 20.25 13.16 12.86 12.20 9.76 11.11 10.98 10.94 13.66 20.00 11.94 22.22 14.71 45.45 27.78 20.00 16.67 23.53 13.21 47.24 14.81 4.26 12.15 13.16 18.75 14.29 13.21 15.62 14.29 19.44 16.50 13.46 10.61 12.20 10.75 12.99 26.47 10.11 18.75 10.00 17.65 10.00 10.00 12.33 10.00 12.16 16.67 K alternative_acceptor CG1416,I_chr2L_21758100_21758179,I_chr2L_21758143_21758183,I_chr2L_21758143_21758209 chr2L + chr2L_21758100_21758201 chr2L_21758100_21758179 chr2L_21758043_21758099;chr2L_21758202_21758279 100.00 100.00 98.44 100.00 97.14 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.55 98.90 100.00 98.57 100.00 98.72 98.78 100.00 100.00 100.00 98.73 100.00 99.16 98.59 100.00 100.00 99.06 100.00 98.99 100.00 98.67 100.00 100.00 97.06 100.00 100.00 100.00 99.08 99.14 K jcn_only_AA CG9992 chrX - chrX_16277201_16278620;chrX_16277559_16278620 chrX_16277545_16278620 chrX_16278621_16278914 31.65 25.00 36.84 22.02 26.67 33.33 17.48 31.62 26.97 NA 31.15 29.36 25.00 25.71 25.00 33.98 28.57 36.84 34.18 33.33 31.67 27.08 44.58 39.71 19.44 30.51 46.05 53.49 25.81 36.11 29.17 28.57 NA 40.19 35.14 26.19 27.40 24.32 41.43 43.14 27.27 34.15 28.36 48.65 56.52 30.30 40.00 NA 33.04 30.43 36.84 49.15 24.24 29.41 33.33 42.55 35.56 44.12 K intron_retention MB8.chr3R.pasa.66,ref1,RI_chr3R_2904130_2904237,RI_chr3R_2904305_2904543,I_chr3R_2904452_2904543 chr3R - chr3R_2904130_2904237 chr3R_2904129_2904130;chr3R_2904237_2904238 chr3R_2904030_2904129;chr3R_2904238_2904304 48.69 NA NA 44.83 NA NA NA 41.67 56.25 NA 30.77 47.37 NA NA NA 75.00 NA NA NA 40.91 NA 46.88 47.06 41.67 NA NA 30.77 51.61 30.00 NA 60.00 NA NA 63.64 NA 52.94 NA NA 54.55 75.00 NA 50.00 NA NA 26.67 45.45 NA NA 42.86 53.33 55.00 NA NA NA 50.00 50.00 NA NA K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27761114_27762991,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27707594_27801169 chr3R_27707594_27747354;chr3R_27747397_27757793;chr3R_27758337_27784756;chr3R_27784850_27801169 chr3R_27747355_27747396;chr3R_27757794_27758336;chr3R_27784757_27784849 chr3R_27707494_27707593;chr3R_27801170_27801219 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA 75.00 NA 100.00 100.00 100.00 NA NA NA 66.67 NA NA NA NA NA NA NA NA NA 100.00 NA NA 66.67 100.00 NA NA NA NA NA 100.00 NA 66.67 NA 66.67 NA NA NA NA 50.00 NA NA NA NA NA NA NA NA 75.00 K intron_retention Ent1 chr2L - chr2L_357767_357815 chr2L_357766_357767;chr2L_357815_357816 chr2L_357423_357766;chr2L_357816_357903 100.00 100.00 100.00 100.00 100.00 94.44 100.00 97.62 98.11 NA 95.24 95.00 95.65 95.83 100.00 97.67 100.00 100.00 100.00 100.00 95.00 100.00 100.00 90.91 100.00 100.00 92.86 87.50 94.12 100.00 95.65 90.00 100.00 97.50 100.00 NA 100.00 100.00 100.00 92.00 88.89 97.87 100.00 100.00 100.00 92.86 93.75 100.00 93.75 100.00 94.12 100.00 92.31 NA 96.88 100.00 100.00 100.00 N alternative_acceptor CG5525,CG5780 chr2L - chr2L_12690542_12690618 chr2L_12690556_12690618 chr2L_12690619_12690687;chr2L_12690476_12690541 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG31033,RI_chr3R_25658089_25658914 chr3R - chr3R_25653716_25653794 chr3R_25653715_25653716;chr3R_25653794_25653795 chr3R_25653572_25653715;chr3R_25653795_25653879 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 1.61 NA 0.00 5.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.41 7.14 10.34 0.00 0.00 0.00 3.12 0.00 1.92 0.00 0.00 0.00 0.00 0.00 8.89 2.27 2.90 0.00 2.00 0.00 0.00 0.00 0.00 3.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 K alternative_acceptor CG30381,RI_chr2R_3817895_3817951,rnh1,RI_chr2R_3819348_3819403 chr2R - chr2R_3818298_3818358 chr2R_3818316_3818358 chr2R_3818359_3818427;chr2R_3818165_3818297 0.00 NA NA 0.00 NA NA 7.14 3.45 4.35 NA NA 0.00 0.00 NA 7.14 7.69 NA 6.67 0.00 3.45 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 5.88 0.00 4.88 0.00 NA NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 5.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 K cassette Fas3,RI_chr2L_18391365_18392248 chr2L + chr2L_18387318_18392244 chr2L_18387318_18391051;chr2L_18391365_18392244 chr2L_18391052_18391364 chr2L_18387298_18387317;chr2L_18392245_18392307 81.82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 81.82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG2219,I_chr4_199813_199889,RI_chr4_202143_202194 chr4 - chr4_199661_199717 chr4_199660_199661;chr4_199717_199718 chr4_199563_199660;chr4_199718_199812 0.00 1.27 0.00 3.30 0.00 0.00 0.00 0.87 0.00 NA 0.00 2.44 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 2.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG4293,RI_chrX_423385_423664,I_chrX_423385_423676 chrX - chrX_423385_423664 chrX_423564_423664 chrX_423665_423764 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette DCAP,I_chr2R_6182829_6183013,RI_chr2R_6183553_6192101,I_chr2R_6188094_6192101 chr2R + chr2R_6182472_6183246 chr2R_6182472_6182795;chr2R_6182829_6183246 chr2R_6182796_6182828 chr2R_6182351_6182471;chr2R_6183247_6183299 90.91 NA NA NA 100.00 NA 72.73 100.00 80.95 NA 100.00 NA 90.00 90.91 NA 75.00 92.86 NA 93.33 89.47 NA NA NA NA NA NA NA NA NA NA 85.71 NA NA 92.31 NA NA 100.00 NA NA 87.50 NA 92.86 80.00 NA NA NA NA 87.50 100.00 NA NA NA NA NA 90.91 NA 85.71 100.00 K jcn_only_AD CG31716,I_chr2L_10397648_10398034 chr2L + chr2L_10399677_10399767;chr2L_10399713_10399767 chr2L_10399689_10399767 chr2L_10399768_10400679;chr2L_10399595_10399676 56.99 58.65 62.61 62.62 52.43 60.38 54.42 63.08 59.26 61.43 60.00 56.19 58.14 63.73 50.77 48.86 56.70 62.16 60.43 57.45 59.26 54.29 55.00 60.00 56.67 67.26 58.62 54.55 39.77 57.02 50.63 48.19 42.03 56.28 56.18 60.40 58.02 43.96 53.50 52.66 61.36 54.39 56.84 58.68 61.76 48.87 NA 47.77 55.50 62.11 52.48 56.96 51.47 58.21 62.02 60.00 62.64 54.46 K alternative_acceptor CG8786 chr3L - chr3L_19634085_19634164;chr3L_19633702_19634164 chr3L_19633419_19634164 chr3L_19634165_19634318;chr3L_19632984_19633418 57.73 64.29 69.23 52.63 40.00 60.00 36.67 68.18 50.00 66.67 57.14 52.17 50.00 54.55 46.15 47.37 64.29 61.54 41.67 71.43 62.50 50.00 66.67 53.33 50.00 73.33 53.85 36.36 57.14 58.33 61.54 62.50 64.29 50.00 81.82 50.00 70.00 60.00 63.64 63.64 50.00 57.14 72.73 60.00 70.00 53.85 63.64 53.85 64.00 77.78 50.00 50.00 NA 71.43 46.67 40.00 66.67 57.14 K intron_retention RI_chr2R_13310877_13311160,CG4802 chr2R + chr2R_13316449_13316507 chr2R_13316448_13316449;chr2R_13316507_13316508 chr2R_13315669_13316448;chr2R_13316508_13316862 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 6.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG17471,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1216718_1216813 chr4_1216718_1216790 chr4_1216618_1216717;chr4_1216814_1216814 90.91 92.86 77.78 86.96 NA 90.00 96.30 93.75 94.29 NA NA 95.83 94.44 82.61 81.82 88.24 90.91 100.00 76.47 93.33 87.50 NA 93.33 90.91 NA NA 91.67 NA NA NA 78.95 NA NA 93.33 100.00 NA NA NA 87.50 100.00 NA 88.46 92.86 NA NA 90.91 NA 90.00 83.87 100.00 92.86 72.73 NA NA 81.25 90.91 NA 85.71 K cassette jdp,I_chr3R_26345486_26351964,I_chr3R_26352098_26352704 chr3R - chr3R_26345486_26351964 chr3R_26345486_26348949;chr3R_26349052_26351964 chr3R_26348950_26349051 chr3R_26345386_26345485;chr3R_26351965_26351993 100.00 NA NA 80.00 NA NA 100.00 100.00 100.00 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA 88.89 100.00 NA 85.71 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA NA 88.89 NA NA NA NA NA 100.00 100.00 100.00 NA K alternative_donor Rox8,I_chr3R_19872211_19872659,I_chr3R_19872214_19872630,I_chr3R_19872214_19872636,I_chr3R_19872214_19872838,I_chr3R_19876189_19876240 chr3R - chr3R_19872214_19873834;chr3R_19872214_19873540;chr3R_19872214_19873550 chr3R_19872214_19873682 chr3R_19872114_19872213;chr3R_19873835_19873903 20.00 20.00 30.77 35.29 50.00 22.22 7.14 40.00 34.78 0.00 20.00 22.22 50.00 27.27 28.57 31.25 45.45 37.50 30.77 31.82 25.00 0.00 0.00 12.50 25.00 22.22 14.29 NA 14.29 14.29 28.57 0.00 10.00 34.78 12.50 9.09 0.00 25.00 20.00 0.00 20.00 21.05 37.50 33.33 0.00 18.18 12.50 16.67 36.00 12.50 14.29 20.00 16.67 20.00 30.77 0.00 20.00 14.29 K alternative_acceptor lwr,RI_chr2L_542347_542429 chr2L - chr2L_542347_542429;chr2L_542351_542429 chr2L_542380_542429 chr2L_542430_542529;chr2L_542247_542346 0.00 0.00 1.54 1.12 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.78 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.61 0.00 0.00 1.71 1.01 0.00 0.00 0.00 1.41 6.15 0.00 0.00 1.37 0.00 0.00 0.00 1.61 1.11 1.39 1.10 0.83 1.59 0.78 0.00 0.00 1.94 2.50 0.00 0.00 0.76 0.00 2.27 0.00 0.00 0.00 2.44 0.94 2.70 1.68 K intron_retention yuri,F_chr2L_15260838_15261717 chr2L - chr2L_15261638_15261717 chr2L_15261637_15261638;chr2L_15261717_15261718 chr2L_15261213_15261637;chr2L_15261718_15261817 4.44 7.02 2.82 5.71 1.89 4.26 10.38 1.83 5.00 3.85 2.27 4.17 7.84 3.70 3.03 6.48 4.05 3.28 2.35 3.41 6.56 1.65 7.69 4.44 14.71 16.36 11.94 14.00 23.46 0.00 2.74 4.94 5.06 4.46 6.38 12.86 1.67 0.00 3.08 3.92 15.83 4.90 3.77 1.79 7.69 6.45 6.06 5.83 4.96 7.81 5.41 0.00 2.60 5.88 3.70 3.51 4.17 3.75 K intron_retention Moe,I_chrX_8774434_8775874,I_chrX_8774434_8791759 chrX - chrX_8774434_8791871 chrX_8774433_8774434;chrX_8791871_8791872 chrX_8774334_8774433;chrX_8791872_8791927 21.13 15.00 10.53 8.93 9.09 25.00 25.00 20.75 34.55 NA 20.00 15.15 22.73 17.39 31.58 20.00 20.83 20.00 25.81 22.22 16.67 NA 5.00 15.38 NA 0.00 25.00 NA NA 36.36 14.81 NA NA 28.21 NA 28.57 NA NA NA 36.36 NA 24.32 25.00 26.67 NA 13.33 NA 14.29 36.67 NA 21.43 NA NA NA 22.73 NA NA NA K jcn_only_AA I_chr2L_8029734_8029787,Cka,CG7429 chr2L + chr2L_8036299_8036381 chr2L_8036299_8036357 chr2L_8035821_8036298;chr2L_8036382_8036576 35.85 46.23 31.28 36.61 36.53 33.33 22.39 38.82 35.85 31.47 31.36 31.13 36.26 36.31 39.80 35.38 39.80 38.86 37.39 32.33 31.96 40.31 27.67 41.74 35.25 34.67 54.46 57.44 28.26 29.89 31.88 32.60 32.77 37.98 33.03 11.74 39.46 38.32 40.69 37.34 25.58 34.84 28.81 35.94 40.52 33.62 43.90 31.72 34.20 41.83 43.57 40.50 37.58 33.33 35.51 41.36 40.31 34.69 K intron_retention mle chr2R - chr2R_1867426_1867547 chr2R_1867425_1867426;chr2R_1867547_1867548 chr2R_1867206_1867425;chr2R_1867548_1867556 93.75 NA 87.50 100.00 NA NA 100.00 100.00 93.75 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 90.00 100.00 88.89 NA 90.00 69.23 NA NA 90.91 92.45 NA 95.24 92.86 81.82 92.86 NA NA NA 100.00 NA 94.44 NA 90.91 NA NA NA 100.00 92.86 NA 100.00 NA NA NA NA NA NA 100.00 K intron_retention Ddip2,I_chr3L_252776_253313 chr3L - chr3L_252776_252834 chr3L_252775_252776;chr3L_252834_252835 chr3L_252694_252775;chr3L_252835_252944 0.00 2.44 0.00 1.59 0.00 0.00 3.28 2.90 5.13 0.00 0.00 0.00 0.00 2.78 0.00 2.13 0.00 0.00 2.17 1.35 3.85 0.00 3.70 0.00 0.00 19.44 9.26 2.94 18.52 4.76 0.00 0.00 0.00 0.00 0.00 0.00 3.51 0.00 0.00 1.27 3.23 1.23 0.00 0.00 0.00 0.00 0.00 0.00 1.32 2.63 2.63 0.00 0.00 0.00 4.35 0.00 4.35 0.00 K intron_retention Nup153,I_chrX_16495232_16495296 chrX + chrX_16500042_16501965 chrX_16500041_16500042;chrX_16501965_16501966 chrX_16499883_16500041;chrX_16501966_16502033 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 14.29 K alternative_donor CG15012 chr3L - chr3L_4291817_4291898 chr3L_4291817_4291874 chr3L_4291687_4291816;chr3L_4291899_4291964 100.00 99.04 100.00 99.45 100.00 100.00 100.00 99.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.16 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.30 100.00 97.75 99.11 100.00 99.12 99.43 100.00 100.00 100.00 100.00 99.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.19 100.00 99.21 100.00 99.43 100.00 K jcn_only_AD wech,I_chr2R_3373673_3377000,I_chr2R_3373673_3377045,I_chr2R_3373673_3377324,I_chr2R_3376705_3376837 chr2R - chr2R_3373673_3377324 chr2R_3373673_3376837 chr2R_3373573_3373672;chr2R_3377325_3377372 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 NA 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 NA NA NA NA NA 100.00 NA NA NA 97.37 100.00 NA 93.48 100.00 NA NA 100.00 NA NA 100.00 NA 98.48 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 K intron_retention Anxb11,I_chrX_16314152_16314405,I_chrX_16314152_16315813 chrX - chrX_16314152_16314405 chrX_16314151_16314152;chrX_16314405_16314406 chrX_16314083_16314151;chrX_16314406_16314505 46.15 NA NA 50.00 NA NA 43.75 43.48 40.00 NA NA 35.71 NA 64.29 41.67 36.36 41.67 NA 46.67 45.00 NA 47.06 36.84 NA 77.78 41.67 41.67 NA NA NA 50.00 NA NA 50.00 NA 36.36 NA NA NA 63.64 NA 56.25 46.15 56.25 NA 46.15 61.54 NA 66.67 50.00 83.33 28.57 NA NA 50.00 NA 36.36 NA K alternative_donor f-cup,RI_chr3R_9522069_9522165,I_chr3R_9524004_9524059,EI_chr3R_9524613_9524789 chr3R - chr3R_9522069_9522160;chr3R_9522069_9522165;chr3R_9522069_9522158 chr3R_9522069_9522163 chr3R_9521969_9522068;chr3R_9522166_9522265 48.57 NA NA 57.14 NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG6762,I_chrX_17751392_17751499,I_chrX_17751392_17751520 chrX + chrX_17751392_17751505;chrX_17751392_17751535 chrX_17751392_17751524 chrX_17751292_17751391;chrX_17751536_17751560 21.43 NA NA NA NA NA 23.81 15.00 12.50 NA NA NA NA NA NA 9.09 NA NA NA 17.86 NA 31.82 18.18 20.00 NA NA 18.18 31.03 20.00 NA NA 22.73 5.00 NA NA NA 22.22 35.00 24.14 26.19 30.43 0.00 NA NA 25.93 30.00 23.81 23.08 22.22 21.43 23.81 NA 7.14 13.04 NA 11.54 19.35 16.67 K intron_retention blp,Sap47 chr3R + chr3R_11760037_11760096 chr3R_11760036_11760037;chr3R_11760096_11760097 chr3R_11759725_11760036;chr3R_11760097_11760668 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 2.06 3.23 0.00 0.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 0.00 0.00 1.85 2.99 3.03 2.74 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 1.11 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.76 0.00 1.09 0.00 0.00 1.39 1.47 0.00 0.00 0.00 0.00 0.00 0.98 0.00 K alternative_donor CG9705,I_chr3L_16774043_16774562 chr3L + chr3L_16773891_16774562 chr3L_16774043_16774562 chr3L_16774563_16774662;chr3L_16773605_16773890 6.98 6.17 5.67 7.50 6.74 6.98 11.01 11.21 7.73 5.88 9.86 44.12 15.29 7.06 8.18 9.00 5.75 9.47 9.30 7.59 10.14 4.85 4.45 4.12 7.19 10.42 8.54 12.50 14.29 9.49 18.11 8.15 8.71 6.83 3.59 4.07 6.52 4.07 5.08 3.89 6.47 7.59 5.62 7.41 6.91 3.49 3.23 8.10 6.22 5.45 2.62 4.46 7.14 2.70 10.92 5.21 6.25 6.49 K intron_retention Cirl,R_chr2R_4502755_4503407 chr2R + chr2R_4503584_4503831 chr2R_4503583_4503584;chr2R_4503831_4503832 chr2R_4503575_4503583;chr2R_4503832_4504021 75.00 100.00 66.67 76.19 77.78 NA 80.95 82.35 84.00 NA NA 52.94 80.00 69.23 70.00 75.00 66.67 NA 81.82 66.67 75.00 82.14 52.00 69.23 66.67 80.00 56.25 53.85 NA NA 69.23 NA 86.36 73.33 81.82 82.35 71.43 75.00 69.23 53.33 100.00 73.08 81.82 77.78 NA NA NA 78.95 80.00 NA 57.89 50.00 NA NA 85.71 NA NA 90.00 K intron_retention Rab8 chr3L - chr3L_19863658_19863726 chr3L_19863657_19863658;chr3L_19863726_19863727 chr3L_19863481_19863657;chr3L_19863727_19864157 100.00 100.00 98.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.82 100.00 100.00 100.00 98.21 100.00 100.00 98.08 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 100.00 100.00 100.00 99.34 98.65 100.00 98.55 100.00 100.00 99.10 100.00 99.08 100.00 98.33 100.00 100.00 100.00 100.00 99.01 98.46 98.86 99.05 K alternative_donor CG3744,I_chr3R_20701248_20701968 chr3R - chr3R_20701248_20701968 chr3R_20701248_20701427 chr3R_20701148_20701247;chr3R_20701969_20702068 100.00 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 100.00 96.20 100.00 100.00 98.61 100.00 100.00 96.15 100.00 100.00 100.00 100.00 98.55 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Tango13,I_chrX_13480088_13480998,I_chrX_13483861_13483954 chrX + chrX_13480088_13483954 chrX_13480088_13480998 chrX_13479988_13480087;chrX_13483955_13484054 1.27 1.08 1.23 1.94 0.00 1.47 2.78 0.89 1.66 0.00 2.00 0.72 2.27 1.61 1.09 1.09 1.41 14.29 1.54 1.91 1.27 1.37 0.61 0.84 0.00 1.59 0.95 2.78 1.47 0.87 1.27 0.00 0.69 1.79 1.12 1.10 0.52 0.80 0.61 1.48 1.92 1.43 1.79 0.88 1.67 0.96 0.00 1.74 2.27 1.54 0.75 1.32 0.00 0.00 1.27 1.12 0.00 1.35 K intron_retention NTPase chr2L - chr2L_2881160_2881214 chr2L_2881159_2881160;chr2L_2881214_2881215 chr2L_2881091_2881159;chr2L_2881215_2881320 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.66 100.00 100.00 99.60 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.63 100.00 100.00 100.00 100.00 100.00 99.52 100.00 100.00 99.62 100.00 100.00 99.63 100.00 100.00 99.43 100.00 100.00 100.00 100.00 100.00 100.00 99.65 100.00 100.00 100.00 100.00 100.00 100.00 99.40 100.00 100.00 100.00 100.00 100.00 99.30 100.00 K intron_retention CG12734,I_chr3L_3183812_3183932,I_chr3L_3184645_3185360 chr3L + chr3L_3183145_3183199 chr3L_3183144_3183145;chr3L_3183199_3183200 chr3L_3181086_3183144;chr3L_3183200_3183438 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG8578 chrX + chrX_15738565_15739394 chrX_15738565_15739359 chrX_15738549_15738564;chrX_15739395_15739501 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA 100.00 NA NA 100.00 97.73 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 97.30 NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor Imp,I_chrX_10699490_10700695,RI_chrX_10699665_10700501,RI_chrX_10699665_10700695 chrX - chrX_10699665_10700501;chrX_10699503_10700501 chrX_10699547_10700501 chrX_10700502_10700547;chrX_10699299_10699502 14.29 20.00 16.67 6.67 NA 20.00 8.70 7.14 7.69 NA 13.33 15.38 6.67 7.14 8.33 3.03 7.14 8.33 17.65 20.00 14.29 37.50 7.69 NA NA 20.00 0.00 14.29 NA 50.00 8.33 NA 18.75 6.90 16.67 14.29 NA NA NA 22.22 NA 13.33 15.38 25.00 NA 20.00 NA 40.00 12.50 NA NA NA NA NA 18.18 NA NA 50.00 K intron_retention Arp14D,RE_chrX_16445264_16446372 chrX - chrX_16443182_16443249 chrX_16443181_16443182;chrX_16443249_16443250 chrX_16442302_16443181;chrX_16443250_16443445 98.75 97.92 100.00 99.17 100.00 100.00 98.96 98.23 99.34 96.43 100.00 100.00 92.59 98.59 98.57 99.18 98.18 98.46 98.67 98.91 97.73 97.50 100.00 100.00 100.00 98.39 100.00 94.12 100.00 96.88 100.00 100.00 98.08 98.31 100.00 100.00 96.88 100.00 95.45 100.00 100.00 99.22 98.25 100.00 98.36 100.00 96.97 99.08 97.69 97.37 97.14 100.00 95.83 95.45 98.75 97.37 97.83 99.13 K jcn_only_AA CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_240655_240769 chr4_240711_240769 chr4_240770_240869;chr4_240611_240654 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.68 3.33 0.00 1.94 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.33 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5198 chr2L + chr2L_10436190_10436248 chr2L_10436189_10436190;chr2L_10436248_10436249 chr2L_10435967_10436189;chr2L_10436249_10436441 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 K jcn_only_AA F_chr2R_14309059_14311473,CG12263 chr2R + chr2R_14317527_14317585 chr2R_14317527_14317572 chr2R_14317078_14317526;chr2R_14317586_14317838 0.00 0.00 0.00 1.39 1.33 2.13 0.99 1.01 1.35 0.00 1.54 0.00 1.82 1.56 1.19 2.38 0.00 0.00 0.00 2.13 1.79 0.00 1.01 0.99 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 1.10 1.54 0.00 1.87 0.00 1.96 0.00 1.08 0.00 3.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.57 0.00 K alternative_donor I_chrX_15223901_15223968,HDAC6,I_chrX_15232958_15233665 chrX + chrX_15232699_15232869 chrX_15232738_15232869 chrX_15232870_15232877;chrX_15232108_15232698 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 NA 100.00 90.91 88.89 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 90.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 94.12 90.91 100.00 100.00 94.74 K intron_retention Vps13,I_chr2R_3464510_3464571 chr2R + chr2R_3466753_3466814 chr2R_3466752_3466753;chr2R_3466814_3466815 chr2R_3465931_3466752;chr2R_3466815_3466915 0.00 0.00 0.00 3.03 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.68 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG5261,I_chr2L_7428611_7428877 chr2L + chr2L_7428680_7428778;chr2L_7428680_7428877 chr2L_7428680_7428925 chr2L_7428612_7428679;chr2L_7428926_7428977 1.78 1.30 3.39 2.50 0.00 3.57 1.28 1.28 0.78 2.08 1.59 1.01 2.63 2.50 2.67 0.00 0.00 0.00 2.50 1.78 1.85 2.41 1.14 3.70 2.13 2.44 1.54 3.28 1.47 1.35 1.59 2.86 1.43 1.32 2.17 1.54 1.85 1.28 1.98 1.05 0.00 3.17 0.00 1.35 5.00 1.61 2.02 1.79 2.27 1.96 1.27 2.86 1.79 7.14 1.64 0.00 3.30 1.67 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814174;chr2R_2814327_2816013;chr2R_2816342_2816577;chr2R_2816779_2817354;chr2R_2817604_2817753 chr2R_2814175_2814326;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817355_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Imp,I_chrX_10699490_10700695,RI_chrX_10699665_10700501,RI_chrX_10699665_10700695 chrX - chrX_10699503_10700474;chrX_10699503_10700501 chrX_10699503_10700695 chrX_10699299_10699502;chrX_10700696_10700795 26.79 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA NA NA K intron_retention a,CG6758,CG11275 chr2R + chr2R_18064263_18064319 chr2R_18064262_18064263;chr2R_18064319_18064320 chr2R_18062881_18064262;chr2R_18064320_18064933 0.00 NA NA 11.11 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 9.09 NA NA NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA K intron_retention CG41099,I_chr3RHet_1686812_1687335,I_chr3RHet_1688505_1705884,RI_chr3RHet_1703294_1705884 chr3RHet - chr3RHet_1686790_1687335 chr3RHet_1686789_1686790;chr3RHet_1687335_1687336 chr3RHet_1686712_1686789;chr3RHet_1687336_1687435 22.73 NA NA NA NA NA 28.57 29.17 30.77 NA NA 25.00 NA NA NA 27.78 NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA 12.50 NA NA 22.73 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA 18.18 NA NA NA NA NA 12.50 NA NA NA K alternative_donor jing,I_chr2R_2505678_2506068 chr2R + chr2R_2501376_2501609;chr2R_2501545_2501609;chr2R_2501482_2501609;chr2R_2501514_2501609 chr2R_2501388_2501609 chr2R_2501610_2503238;chr2R_2501342_2501375 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA 20.00 0.00 NA NA NA 0.00 NA 18.18 0.00 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 14.29 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA K cassette ps,I_chr3R_5243723_5270765,I_chr3R_5245770_5269732,I_chr3R_5265428_5269732,I_chr3R_5265428_5270765,I_chr3R_5269733_5270765 chr3R + chr3R_5262841_5270765;chr3R_5258562_5270765;chr3R_5245770_5270765 chr3R_5258562_5269732,chr3R_5245770_5269732,chr3R_5262841_5269732;chr3R_5269799_5270765 chr3R_5269733_5269798 chr3R_5245740_5245769;chr3R_5270766_5270860 51.72 57.89 51.72 54.09 51.22 48.05 33.33 61.11 54.01 72.73 43.96 45.86 60.71 55.70 48.65 59.17 49.44 54.55 52.63 51.66 49.38 73.33 55.03 60.00 48.65 42.68 56.34 76.79 44.59 55.91 49.35 48.15 48.42 54.11 51.32 42.59 55.77 56.10 42.42 39.31 56.41 52.41 48.84 54.29 50.00 50.98 53.85 54.69 47.40 52.83 48.85 61.90 41.07 59.26 52.21 46.51 40.00 41.86 K alternative_donor Syx16,RI_chrX_20264515_20264584 chrX - chrX_20264515_20264588 chrX_20264515_20264584 chrX_20264415_20264514;chrX_20264589_20264684 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.99 0.00 0.00 0.00 0.00 0.00 0.00 8.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 1.96 0.00 2.78 7.32 0.00 0.00 2.63 0.00 0.00 2.08 0.00 2.17 0.00 0.00 1.77 2.53 0.00 1.03 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 K jcn_only_AA HLH106,RI_chr3L_19787260_19787323 chr3L + chr3L_19789493_19789558 chr3L_19789493_19789552 chr3L_19788002_19789492;chr3L_19789559_19790358 100.00 100.00 100.00 99.91 100.00 100.00 99.91 99.91 99.87 99.66 100.00 99.92 100.00 99.83 99.73 99.79 100.00 100.00 100.00 99.82 100.00 100.00 99.77 100.00 100.00 99.86 99.79 100.00 100.00 99.48 100.00 100.00 99.45 100.00 99.79 100.00 100.00 100.00 100.00 100.00 100.00 99.85 99.81 99.85 100.00 99.86 100.00 100.00 99.92 100.00 100.00 100.00 100.00 99.78 99.73 99.82 100.00 100.00 K intron_retention foi,I_chr3L_8520658_8520733,I_chr3L_8524905_8524976 chr3L + chr3L_8518753_8523659 chr3L_8518752_8518753;chr3L_8523659_8523660 chr3L_8518490_8518752;chr3L_8523660_8524249 96.97 97.14 97.06 98.31 97.56 97.14 98.25 98.48 96.26 96.15 97.22 96.77 96.97 94.87 94.74 95.92 97.06 100.00 97.30 98.94 100.00 96.36 94.55 92.68 100.00 90.00 97.37 90.00 94.59 96.97 97.44 92.86 100.00 98.28 100.00 100.00 94.52 95.00 93.02 96.49 100.00 95.52 96.55 100.00 100.00 95.83 95.45 96.00 90.00 96.77 97.37 96.88 100.00 100.00 96.00 96.30 96.00 100.00 K jcn_only_AD GXIVsPLA2,I_chr3L_15948429_15948487,I_chr3L_15950680_15950738 chr3L + chr3L_15948410_15948487;chr3L_15948415_15948487 chr3L_15948429_15948487 chr3L_15948488_15948587;chr3L_15948329_15948409 1.11 NA NA 5.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD bnl,I_chr3R_15621238_15621299 chr3R - chr3R_15621238_15621935 chr3R_15621238_15621299 chr3R_15621138_15621237;chr3R_15621936_15622463 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K alternative_acceptor eIF5,RI_chrX_15883163_15883424,I_chrX_15883297_15883424,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15883163_15883424;chrX_15883302_15883424;chrX_15883143_15883424 chrX_15883360_15883424 chrX_15883425_15883509;chrX_15883079_15883142 10.76 15.38 10.71 9.52 17.65 8.70 7.27 7.46 19.67 16.67 14.29 10.87 10.00 13.51 16.67 11.11 14.81 9.52 11.63 11.11 11.76 7.41 20.00 10.00 NA 8.33 10.53 8.70 10.53 9.09 5.97 23.53 10.81 7.14 10.34 8.70 11.76 13.33 7.69 4.65 10.34 6.25 14.71 8.82 21.43 11.63 14.81 6.06 6.82 16.00 9.09 22.22 11.54 17.65 9.09 11.11 12.50 6.82 K intron_retention CG2201,I_chr2L_21618111_21618314 chr2L - chr2L_21618111_21623365 chr2L_21618110_21618111;chr2L_21623365_21623366 chr2L_21618011_21618110;chr2L_21623366_21623540 10.47 0.00 6.67 7.14 NA NA 0.00 12.00 11.43 15.38 NA 8.00 13.33 9.52 9.52 13.64 13.33 7.69 9.09 7.69 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA 0.00 NA 13.33 12.50 NA NA NA NA NA 13.04 NA NA NA NA NA 11.76 NA NA 15.38 K alternative_donor Fmr1,I_chr3R_5934794_5935190,I_chr3R_5934794_5935245,I_chr3R_5934801_5935537 chr3R - chr3R_5934794_5935537 chr3R_5934794_5935190 chr3R_5934701_5934793;chr3R_5935538_5935637 0.00 0.00 1.19 0.74 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.76 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.60 1.18 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.81 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 K cassette sda,I_chr3R_22742285_22742350,RI_chr3R_22750984_22752737 chr3R + chr3R_22752154_22764166;chr3R_22750984_22764166 chr3R_22752154_22761680,chr3R_22750984_22761680;chr3R_22762014_22764166 chr3R_22761681_22762013 chr3R_22750884_22750983;chr3R_22764167_22764353 13.57 4.35 9.09 15.00 8.00 10.00 9.09 15.38 13.33 14.29 7.14 20.00 18.18 8.70 12.00 17.65 9.09 5.56 9.09 20.00 NA 38.96 16.13 15.79 16.67 14.29 9.80 39.53 13.64 12.77 9.09 18.18 19.61 10.00 16.67 27.78 16.28 13.51 19.51 15.19 19.35 11.11 12.50 27.45 26.09 9.30 8.00 17.65 6.67 18.52 10.00 14.81 11.11 18.18 10.71 9.09 8.70 6.25 K intron_retention eIF2B-beta chrX + chrX_2598957_2599025 chrX_2598956_2598957;chrX_2599025_2599026 chrX_2598870_2598956;chrX_2599026_2599482 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 6.45 0.71 0.00 1.72 6.90 1.72 0.00 15.07 2.78 3.45 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 5.75 0.00 0.00 2.56 0.00 0.88 0.84 3.39 0.79 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 K alternative_acceptor CG6701,RI_chr2R_9866395_9866446,RI_chr2R_9866896_9867532 chr2R - chr2R_9865355_9866446;chr2R_9865335_9866446 chr2R_9866395_9866446 chr2R_9866447_9866546;chr2R_9865150_9865334 2.90 3.51 2.90 7.83 1.45 2.82 5.79 3.79 4.38 2.78 3.45 3.51 4.05 2.74 2.33 6.12 3.23 2.90 3.70 3.10 1.85 2.90 4.05 1.64 2.44 2.35 5.97 8.16 3.64 1.79 4.82 0.00 1.75 3.64 2.44 6.25 2.90 1.92 1.54 3.57 3.23 2.04 3.39 3.03 0.00 3.23 0.00 1.49 4.80 4.00 1.79 2.63 0.00 0.00 2.27 0.00 0.00 2.63 K intron_retention noncoding_18164,F_chr3R_17192061_17200781,RI_chr3R_17192434_17192695,RI_chr3R_17192441_17192695,RI_chr3R_17192484_17193084 chr3R + chr3R_17192484_17192695 chr3R_17192483_17192484;chr3R_17192695_17192696 chr3R_17192384_17192483;chr3R_17192696_17192795 13.33 6.67 NA 18.52 NA NA 4.76 15.00 14.81 NA NA 8.70 NA 25.00 NA 22.22 NA NA 12.50 16.67 NA 0.00 16.67 5.56 NA NA 0.00 NA NA 10.53 0.00 25.00 16.67 7.41 13.33 25.00 NA NA 15.38 26.32 13.33 10.00 NA 0.00 9.52 0.00 11.11 13.33 19.35 15.00 17.24 NA NA NA NA 0.00 14.29 17.65 K intron_retention CG8516 chr3R + chr3R_5619317_5619502 chr3R_5619316_5619317;chr3R_5619502_5619503 chr3R_5619009_5619316;chr3R_5619503_5619643 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 3.70 2.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K alternative_last_exon nudE chr3L + chr3L_9894535_9895250 chr3L_9894535_9894660 chr3L_9895251_9896789 chr3L_9894661_9894988 chr3L_9894443_9894534 16.22 17.95 8.82 4.55 16.67 13.79 5.77 5.08 10.39 12.50 8.70 8.47 9.38 9.38 16.13 6.90 10.00 10.71 5.56 15.49 4.55 33.33 9.80 22.73 17.86 9.38 16.28 39.39 28.21 14.71 9.68 25.64 17.65 3.64 22.22 16.67 27.03 21.43 24.39 25.00 16.22 12.50 7.14 21.95 42.86 17.31 27.27 19.51 7.58 23.53 18.52 11.54 24.00 20.51 12.82 25.49 31.71 17.02 K alternative_acceptor CG14741 chr3R - chr3R_7900593_7900895;chr3R_7900613_7900895 chr3R_7900616_7900895 chr3R_7900896_7901144;chr3R_7900525_7900592 48.28 53.66 64.44 53.54 42.11 48.28 69.23 54.84 58.20 40.00 75.00 48.91 60.00 44.44 48.98 54.78 57.58 51.06 50.79 46.59 45.10 44.90 41.07 37.14 57.14 53.49 47.62 27.27 49.33 41.82 49.06 50.00 36.00 52.56 38.71 48.05 35.71 41.18 40.00 41.67 45.16 51.85 60.00 51.39 41.30 53.12 43.75 40.48 53.64 63.64 54.05 47.62 36.36 36.36 55.56 37.50 37.14 30.38 K intron_retention su(Hw) chr3R - chr3R_10133693_10134245 chr3R_10133692_10133693;chr3R_10134245_10134246 chr3R_10132820_10133692;chr3R_10134246_10134347 11.61 NA 7.41 25.93 NA 12.50 23.33 15.15 20.93 NA 10.53 22.22 25.00 0.00 0.00 15.38 5.26 5.88 0.00 4.88 5.88 NA NA NA NA 10.53 NA NA NA NA 26.67 NA 0.00 10.71 NA NA 0.00 NA 23.81 NA NA 14.29 18.75 NA NA NA NA NA 8.11 NA NA 25.00 NA NA 14.29 NA NA NA K alternative_donor CG5708,I_chr2L_10225966_10226334,I_chr2L_10225966_10226377 chr2L - chr2L_10225966_10226773 chr2L_10225966_10226664 chr2L_10225874_10225965;chr2L_10226774_10226842 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 K intron_retention CG1578,RI_chrX_11709573_11710335,I_chrX_11710380_11710454 chrX - chrX_11707501_11708729 chrX_11707500_11707501;chrX_11708729_11708730 chrX_11707321_11707500;chrX_11708730_11708914 0.00 0.00 0.00 0.00 0.00 2.70 2.94 2.86 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 4.88 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 3.77 1.82 0.00 0.00 2.60 0.00 2.63 1.92 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 1.72 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781 chr3R - chr3R_17186277_17186349 chr3R_17186276_17186277;chr3R_17186349_17186350 chr3R_17186175_17186276;chr3R_17186350_17187009 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG5805 chr3R - chr3R_20612625_20613016 chr3R_20612625_20612713 chr3R_20611695_20612624;chr3R_20613017_20613134 8.33 2.08 5.88 8.24 6.52 6.52 9.93 3.33 6.08 9.09 6.67 7.78 2.08 7.14 4.08 8.16 8.11 12.73 3.17 5.42 2.13 20.90 11.76 23.68 12.50 11.54 17.46 22.41 39.53 26.67 4.44 27.27 25.81 4.44 16.95 14.29 3.80 3.12 10.34 25.32 19.51 5.26 9.30 16.67 24.39 4.48 8.33 30.61 4.21 10.64 1.56 14.71 8.33 6.98 9.52 12.24 5.56 35.29 K alternative_acceptor e(y)3,I_chrX_19528120_19528166 chrX - chrX_19528105_19528166 chrX_19528120_19528166 chrX_19528167_19528266;chrX_19528020_19528104 0.88 0.00 1.14 0.95 0.00 1.82 1.12 1.98 0.52 0.00 0.00 2.50 0.00 0.00 0.00 0.90 0.00 1.47 1.35 1.52 0.00 1.64 0.88 1.05 0.00 1.43 1.43 0.00 0.00 1.22 1.59 0.00 0.00 0.85 2.13 1.54 0.79 1.37 2.70 0.62 0.00 0.75 0.00 1.09 0.00 1.67 0.00 2.44 1.87 0.00 0.00 0.00 0.00 3.12 1.23 2.44 0.00 1.35 K jcn_only_AD hppy,I_chr2R_15066378_15066915,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15066378_15067003;chr2R_15066243_15067003;chr2R_15066358_15067003 chr2R_15066304_15067003 chr2R_15067004_15067015;chr2R_15066237_15066242 0.00 NA NA NA NA NA NA NA 9.38 NA NA 4.55 NA NA NA 0.00 NA NA 9.09 0.00 NA 2.17 0.00 NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA 0.00 2.50 NA 0.00 NA NA NA 9.52 NA NA NA K alternative_acceptor CG7091,RI_chr3R_8805541_8805680,I_chr3R_8809774_8809832 chr3R + chr3R_8805541_8805680 chr3R_8805541_8805676 chr3R_8805441_8805540;chr3R_8805681_8805780 100.00 96.97 100.00 98.36 100.00 100.00 96.00 98.41 94.74 100.00 100.00 98.31 100.00 96.15 97.67 94.34 97.30 100.00 100.00 95.77 96.88 100.00 100.00 100.00 NA 96.55 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 97.22 100.00 95.77 100.00 100.00 100.00 100.00 100.00 96.77 94.44 100.00 95.45 100.00 94.44 100.00 98.08 100.00 100.00 97.06 K intron_retention R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083522_8089397 chr2L_8083521_8083522;chr2L_8089397_8089398 chr2L_8083444_8083521;chr2L_8089398_8089493 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 NA 97.62 93.33 100.00 100.00 98.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 96.55 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 95.83 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K alternative_acceptor CG32473 chr3R + chr3R_9134627_9135214 chr3R_9134627_9135190 chr3R_9134558_9134626;chr3R_9135215_9135677 95.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA K jcn_only_AA CG8213 chr2R - chr2R_4858557_4858929 chr2R_4858755_4858929 chr2R_4858930_4862949;chr2R_4858370_4858556 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA 8.70 4.00 5.00 NA NA NA NA 21.21 12.50 NA NA NA NA NA 39.13 20.00 NA NA 20.00 14.29 15.00 NA 16.67 10.00 27.27 NA 27.59 NA NA 10.00 NA NA 5.00 NA NA NA NA K intron_retention CG40439,I_chr2L_22690863_22690905 chr2L - chr2L_22690855_22690905 chr2L_22690854_22690855;chr2L_22690905_22690906 chr2L_22690763_22690854;chr2L_22690906_22691005 2.78 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 5.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG9836,I_chr3R_4654041_4664113,I_chr3R_4749124_4756437 chr3R - chr3R_4648792_4648970;chr3R_4648792_4648989 chr3R_4648792_4648982 chr3R_4648564_4648791;chr3R_4648990_4649023 96.52 93.94 98.44 96.36 96.67 98.04 97.13 94.40 94.44 97.62 93.33 96.04 100.00 96.15 98.25 95.96 98.15 94.12 94.52 92.26 97.78 96.55 96.30 95.45 98.15 94.92 93.75 91.18 95.18 97.06 96.52 94.44 100.00 97.48 93.75 95.06 98.61 98.15 98.41 98.59 95.79 96.43 98.04 98.70 96.05 98.33 93.28 98.15 96.49 95.61 95.29 98.28 96.97 97.59 94.44 98.99 98.50 96.91 K jcn_only_AD CG7224 chr2L + chr2L_7999176_7999248;chr2L_7999168_7999248;chr2L_7999170_7999248 chr2L_7999174_7999248 chr2L_7999249_7999714;chr2L_7998934_7999167 0.00 0.00 2.08 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 1.39 2.44 3.57 0.00 0.00 0.00 2.63 0.00 0.00 2.22 0.00 0.00 0.00 2.04 0.00 0.00 4.65 2.74 0.00 2.33 0.00 1.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.75 0.00 0.00 1.61 0.00 1.75 0.00 0.00 1.39 0.00 0.00 2.27 0.00 1.08 K jcn_only_AA I_chrX_15680663_15680821,Rhp chrX + chrX_15685936_15686020 chrX_15685936_15685987 chrX_15685495_15685935;chrX_15686021_15686177 0.00 0.00 NA 0.00 NA NA 0.00 0.00 4.44 NA NA 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA 0.00 2.70 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 1.92 2.17 NA 0.00 0.00 NA NA 3.57 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 1.75 4.00 K intron_retention CG5630,MIP19519 chr3R + chr3R_16740131_16751643 chr3R_16740130_16740131;chr3R_16751643_16751644 chr3R_16740062_16740130;chr3R_16751644_16751824 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 4.08 3.23 1.37 0.00 2.99 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 2.17 0.00 2.13 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 3.03 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 K alternative_acceptor lt,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22832567_22832623 chr2L_22832567_22832618 chr2L_22832499_22832566;chr2L_22832624_22832723 94.87 84.85 96.77 97.96 95.24 85.71 90.77 92.31 92.59 95.45 95.65 91.14 96.77 90.91 97.37 94.59 100.00 96.30 93.22 97.18 94.74 94.87 96.77 92.86 95.24 100.00 89.66 89.47 91.89 93.75 89.83 92.45 95.56 91.03 100.00 95.83 94.74 100.00 94.74 92.13 94.55 91.30 97.37 94.59 88.89 94.87 95.83 94.62 93.42 100.00 97.06 100.00 100.00 96.97 91.11 97.06 97.56 95.96 K jcn_only_AD CG5001,I_chr2L_1191535_1191648 chr2L + chr2L_1186350_1191402 chr2L_1186453_1191402 chr2L_1191403_1191534;chr2L_1186256_1186349 100.00 100.00 92.86 100.00 NA 100.00 100.00 98.25 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 96.15 100.00 100.00 93.75 NA 95.45 100.00 100.00 NA 95.24 100.00 NA NA 100.00 100.00 NA 100.00 97.56 100.00 NA 100.00 100.00 100.00 100.00 NA 98.55 100.00 100.00 NA 97.56 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 96.30 100.00 100.00 100.00 K jcn_only_AA capu,I_chr2L_3884519_3902594 chr2L - chr2L_3887800_3893261;chr2L_3887557_3893261 chr2L_3889785_3893261 chr2L_3893262_3893604 2.50 5.88 4.29 1.11 1.75 0.00 6.74 4.67 3.45 2.50 1.41 4.39 1.89 4.41 3.45 4.05 0.00 0.00 4.41 2.92 0.00 2.16 6.19 5.75 9.68 1.89 6.33 2.22 3.97 0.84 2.82 1.82 1.43 1.94 3.39 4.90 0.00 0.00 1.96 0.97 2.33 2.48 0.00 2.00 8.54 1.90 1.47 3.54 4.08 0.00 2.70 0.00 6.15 5.41 3.06 1.61 5.71 3.38 K alternative_donor CG13895,RI_chr3L_707623_707678,RI_chr3L_711692_711744 chr3L - chr3L_707623_707889 chr3L_707623_707678 chr3L_707523_707622;chr3L_707890_707997 2.08 2.60 1.19 1.28 1.49 2.60 3.88 3.60 2.20 3.70 2.53 3.01 3.10 3.08 1.12 3.92 1.92 1.66 2.73 1.12 2.33 3.30 0.82 4.00 1.27 0.00 2.46 2.35 0.50 2.24 2.33 1.45 1.65 4.08 2.53 1.26 2.42 1.54 2.29 1.28 1.22 1.31 2.08 1.72 1.28 2.22 1.00 1.51 1.90 1.82 3.03 2.13 1.98 1.59 2.20 2.94 0.66 0.77 K jcn_only_AD chn chr2R + chr2R_11027601_11029341 chr2R_11028806_11029341 chr2R_11029342_11031942 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 3.03 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K intron_retention CG10462 chr2L - chr2L_19732677_19732744 chr2L_19732676_19732677;chr2L_19732744_19732745 chr2L_19732573_19732676;chr2L_19732745_19733069 0.00 0.00 0.00 11.76 0.00 0.00 0.00 2.70 2.25 0.00 0.00 0.00 5.56 0.00 2.13 2.90 0.00 3.03 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 6.82 8.33 0.00 0.00 0.00 0.00 0.00 1.47 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.99 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 1.32 2.72 K intron_retention RN-tre chr2R - chr2R_9877492_9878070 chr2R_9877491_9877492;chr2R_9878070_9878071 chr2R_9877190_9877491;chr2R_9878071_9878197 4.60 7.14 3.45 3.28 3.45 4.17 25.00 0.00 7.50 4.88 0.00 5.75 5.71 6.56 10.53 9.09 6.45 6.45 4.55 4.60 2.94 8.06 5.26 0.00 0.00 5.41 3.57 13.64 7.32 4.92 4.27 0.00 4.76 5.19 0.00 3.57 0.00 3.23 6.98 2.44 5.13 6.10 2.17 1.43 3.49 3.77 4.88 3.72 4.72 0.00 6.94 3.33 4.44 0.00 5.97 5.08 8.82 1.61 K intron_retention I_chr3L_2261108_2261339,ecd chr3L - chr3L_2265423_2265495 chr3L_2265422_2265423;chr3L_2265495_2265496 chr3L_2263581_2265422;chr3L_2265496_2265852 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 9.52 8.16 2.94 0.00 0.00 0.00 2.86 0.00 0.00 2.56 0.00 0.00 0.00 3.03 4.76 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 2.27 0.00 6.45 0.00 0.00 3.23 0.00 0.00 0.00 K intron_retention eas,REI_chrX_16172581_16177702 chrX + chrX_16178272_16178344 chrX_16178271_16178272;chrX_16178344_16178345 chrX_16177703_16178271;chrX_16178345_16178794 0.00 0.00 0.00 5.56 0.00 0.00 0.00 4.55 1.67 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K alternative_donor plexB,I_chr4_61912_62843 chr4 - chr4_61912_63539 chr4_61912_62843 chr4_61812_61911;chr4_63540_64403 4.55 4.55 4.71 9.16 2.70 5.26 6.56 3.01 7.75 0.00 5.26 3.50 2.63 5.56 3.53 4.24 3.08 11.54 5.88 4.72 0.00 23.08 4.00 5.71 2.70 1.59 5.56 9.09 4.55 3.12 6.78 NA 1.33 5.38 5.88 4.26 0.00 3.85 0.00 3.03 3.85 5.51 7.55 6.25 12.50 4.17 NA 1.23 3.92 10.00 4.00 8.00 7.14 NA 3.37 10.00 18.18 4.00 K intron_retention par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,I_chr2R_15350149_15350210,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350285_15351814 chr2R_15350284_15350285;chr2R_15351814_15351815 chr2R_15350273_15350284;chr2R_15351815_15351914 88.89 NA NA 66.67 NA NA 84.62 72.22 83.33 NA NA NA NA 87.50 88.89 86.67 87.50 NA NA 93.75 NA 88.89 100.00 NA NA 91.67 NA NA NA 100.00 90.00 NA NA 93.33 NA 90.91 NA NA NA NA NA 91.67 NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA K intron_retention RpL32,I_chr3R_25871509_25871807 chr3R - chr3R_25871509_25871851 chr3R_25871508_25871509;chr3R_25871851_25871852 chr3R_25871409_25871508;chr3R_25871852_25871862 7.41 11.76 4.76 2.90 5.00 0.00 9.52 6.52 2.50 12.00 2.86 4.17 9.09 14.29 6.25 12.00 7.41 2.70 6.06 3.49 6.06 16.98 25.00 12.50 10.53 5.26 30.43 33.33 13.11 6.67 7.69 10.00 7.14 3.92 10.53 6.67 15.00 10.00 19.05 12.50 12.20 6.67 6.90 8.11 4.29 6.00 7.41 7.58 13.89 8.33 NA 0.00 9.76 NA 6.12 3.45 8.33 6.25 K intron_retention NUCB1,RI_chr3L_17794900_17794991 chr3L - chr3L_17792653_17794991 chr3L_17792652_17792653;chr3L_17794991_17794992 chr3L_17791160_17792652;chr3L_17794992_17795091 0.00 0.00 0.44 0.92 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.44 0.71 0.00 0.00 0.00 0.00 0.43 0.00 0.00 K jcn_only_AA dnc,I_chrX_3150245_3150319,I_chrX_3150351_3152643 chrX + chrX_3150245_3152643;chrX_3150245_3152646 chrX_3150245_3150319 chrX_3150235_3150244;chrX_3152647_3152733 16.55 NA 18.18 30.00 NA 28.00 30.77 9.68 NA NA NA 19.23 25.00 NA 15.15 17.95 NA NA 11.54 10.61 NA NA NA NA NA NA NA NA NA NA 8.00 NA NA 12.82 NA NA NA NA NA NA NA 13.73 NA NA NA NA NA NA 10.91 NA NA NA NA NA 22.73 NA NA NA K alternative_donor Dlic chrX + chrX_11048699_11049066 chrX_11048724_11049066 chrX_11049067_11049261;chrX_11048472_11048698 0.00 0.00 0.00 2.11 0.00 0.00 2.90 0.00 0.69 0.00 2.08 0.00 0.00 0.00 0.00 1.72 0.00 4.26 2.56 1.83 2.38 13.68 0.00 1.69 0.00 0.00 3.28 0.00 2.15 0.00 1.64 0.00 1.85 2.30 0.00 3.39 1.32 1.89 0.00 2.06 1.49 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.92 0.00 2.33 0.00 0.00 0.00 3.12 0.00 0.00 0.00 N multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2814327_2817753 chr2R_2814327_2814894;chr2R_2815654_2816013;chr2R_2816342_2816577;chr2R_2816779_2817753 chr2R_2814895_2815653;chr2R_2816014_2816341;chr2R_2816578_2816778 chr2R_2814227_2814326;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 K intron_retention l(2)k01209,I_chr2R_13308079_13310771,I_chr2R_13309452_13310771,RI_chr2R_13310877_13311160 chr2R + chr2R_13308079_13308147 chr2R_13308078_13308079;chr2R_13308147_13308148 chr2R_13307979_13308078;chr2R_13308148_13309451 89.44 NA 88.89 93.33 NA NA 80.00 100.00 71.43 NA 87.50 93.75 NA 100.00 87.50 94.12 100.00 92.31 90.00 96.15 87.50 78.95 100.00 92.86 100.00 100.00 91.67 NA 78.26 94.44 86.67 87.50 80.77 95.45 91.67 94.12 90.00 88.89 76.92 66.67 72.73 86.36 NA 75.00 50.00 69.23 100.00 77.78 84.62 100.00 91.67 88.89 70.00 NA 92.86 NA 90.91 73.33 K jcn_only_AD glob1,I_chr3R_11723738_11727000 chr3R - chr3R_11723738_11726929 chr3R_11723738_11726731 chr3R_11723638_11723737;chr3R_11726930_11727083 89.83 89.66 90.00 63.04 NA NA 87.50 78.38 83.02 NA NA 90.32 NA 82.61 89.47 86.84 91.30 NA 90.00 89.47 100.00 68.18 93.10 89.66 NA NA 75.00 NA NA NA 94.74 79.17 NA 91.67 90.48 NA NA NA NA 91.67 NA 85.42 82.14 79.17 NA 92.86 92.50 NA 97.92 NA 91.89 NA 90.00 86.96 91.18 100.00 96.77 85.00 K jcn_only_AA Rme-8 chr2R - chr2R_5063437_5063595 chr2R_5063440_5063595 chr2R_5063596_5063740;chr2R_5063238_5063436 57.52 56.52 66.67 54.87 65.45 63.33 57.45 50.41 55.94 52.17 64.29 59.66 56.36 64.86 65.33 51.16 53.85 55.88 53.75 57.52 58.82 51.06 62.50 56.00 56.45 55.56 54.55 60.71 51.85 51.43 50.98 NA 63.04 65.45 63.64 61.54 63.16 50.00 57.14 62.50 NA 62.04 54.39 58.67 NA 58.33 NA 64.52 69.29 57.14 59.70 57.14 70.83 NA 58.54 NA NA NA K jcn_only_AD CG5933 chr3R + chr3R_19858412_19858481 chr3R_19858414_19858481 chr3R_19858482_19859975;chr3R_19858120_19858411 100.00 NA NA 100.00 NA NA 95.24 96.77 100.00 NA NA 97.06 NA NA NA 100.00 NA 95.45 NA 100.00 NA 92.31 NA NA NA 100.00 NA NA 95.00 100.00 90.48 100.00 NA 97.14 NA NA NA NA NA 100.00 100.00 91.30 NA 100.00 100.00 95.45 NA 93.94 100.00 NA NA NA NA NA NA NA NA NA K intron_retention east,CR_chrX_1912038_1912737 chrX + chrX_1915151_1915204 chrX_1915150_1915151;chrX_1915204_1915205 chrX_1913881_1915150;chrX_1915205_1916691 26.19 22.54 20.55 69.23 25.86 23.73 30.00 35.78 21.33 30.14 22.92 29.52 16.42 24.56 24.00 32.18 23.44 32.35 26.03 29.41 24.32 21.43 30.21 28.05 47.73 34.92 34.92 45.45 21.74 18.18 31.75 20.97 21.19 32.29 29.69 63.64 31.73 19.61 26.67 29.91 44.44 27.27 19.40 30.51 17.05 28.05 19.12 27.52 25.87 29.23 26.19 28.00 19.15 24.32 25.32 25.00 18.37 18.99 K intron_retention CG32448 chr3L - chr3L_21821105_21821170 chr3L_21821104_21821105;chr3L_21821170_21821171 chr3L_21820843_21821104;chr3L_21821171_21821297 0.00 2.50 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9776 chr3R - chr3R_158583_158713 chr3R_158582_158583;chr3R_158713_158714 chr3R_158294_158582;chr3R_158714_158881 45.80 53.33 NA NA NA NA 61.54 50.00 71.43 NA NA NA NA 54.55 45.45 42.86 NA NA NA 50.00 NA NA 41.67 30.77 NA NA NA NA NA 42.86 13.64 NA 21.43 50.00 NA NA 42.86 NA 41.67 40.00 NA 72.73 NA 41.67 NA NA NA NA 55.00 NA 46.15 NA NA NA 60.00 NA NA NA K jcn_only_AA CG5916 chr3R + chr3R_11973086_11973168 chr3R_11973086_11973165 chr3R_11972903_11973085;chr3R_11973169_11973392 93.84 94.59 93.55 94.12 96.15 89.66 92.11 95.65 92.73 NA 91.67 98.65 NA 96.67 97.30 100.00 87.50 84.62 89.66 95.74 83.33 90.48 91.49 94.74 95.00 96.55 94.34 92.59 96.67 95.83 90.62 88.46 96.55 93.33 100.00 86.96 91.18 94.64 94.92 92.59 NA 92.31 92.00 92.59 96.43 89.66 100.00 96.30 91.07 93.10 97.37 NA 92.00 NA 97.92 100.00 88.89 95.83 K intron_retention CG34242 chr3L + chr3L_12527105_12527162 chr3L_12527104_12527105;chr3L_12527162_12527163 chr3L_12527083_12527104;chr3L_12527163_12527286 58.33 NA NA NA NA NA NA NA 60.00 NA 60.00 56.25 NA NA NA NA NA NA NA 50.00 58.33 NA NA NA NA NA NA NA NA NA NA NA NA 53.85 NA NA NA NA NA NA NA 36.84 NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA 60.00 NA K alternative_acceptor CG8578 chrX + chrX_15738565_15739394 chrX_15738565_15739359 chrX_15738549_15738564;chrX_15739395_15739501 100.00 100.00 NA 100.00 88.89 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 85.71 90.91 100.00 NA NA 100.00 NA 100.00 96.00 100.00 NA 100.00 NA 94.74 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 94.12 100.00 100.00 NA 100.00 100.00 92.31 100.00 K jcn_only_AA CG11980 chr3R + chr3R_4829798_4829863 chr3R_4829798_4829860 chr3R_4829756_4829797;chr3R_4829864_4830173 11.36 NA NA 3.33 NA NA NA 15.38 11.43 NA NA 5.88 NA NA NA NA NA NA NA 7.69 NA NA NA NA NA 13.64 NA NA NA NA NA NA NA 13.04 NA NA NA NA NA NA NA 11.36 4.55 NA NA NA NA NA 12.82 NA NA NA NA NA 9.09 NA NA NA K jcn_only_AD l(2)k05819,I_chr2L_4396173_4396266 chr2L + chr2L_4396128_4396809;chr2L_4396407_4396809 chr2L_4396173_4396809 chr2L_4396810_4396906;chr2L_4396073_4396127 52.03 55.21 54.55 68.97 57.38 53.54 64.40 53.50 52.03 48.28 75.00 35.20 43.75 67.00 63.11 59.09 51.35 67.71 74.77 56.65 60.38 43.90 50.00 57.52 46.94 87.07 57.94 85.23 44.86 43.66 49.53 72.55 38.89 56.45 48.48 50.00 48.51 33.33 43.37 50.00 43.24 52.38 65.59 43.24 52.27 48.33 51.39 41.54 56.70 66.67 46.02 55.17 32.61 37.50 63.16 34.62 40.00 28.12 K alternative_donor RhoGAP68F,RI_chr3L_12133229_12134100 chr3L + chr3L_12132052_12133062 chr3L_12132202_12133062 chr3L_12133063_12133228;chr3L_12131974_12132051 2.52 5.00 1.61 5.45 2.00 2.17 6.84 3.33 2.60 0.00 6.56 3.66 3.39 3.39 4.41 3.41 3.45 0.00 2.44 2.52 3.51 0.00 2.56 1.82 3.85 0.00 2.78 0.00 3.03 0.00 1.79 4.35 0.00 3.30 0.00 8.33 1.35 2.70 0.00 3.57 0.00 4.00 3.70 2.22 0.00 5.13 5.71 2.33 3.54 0.00 3.03 0.00 0.00 0.00 1.52 0.00 2.38 0.00 K intron_retention S2P,I_chr2R_7731333_7731381 chr2R - chr2R_7731333_7731383 chr2R_7731332_7731333;chr2R_7731383_7731384 chr2R_7731233_7731332;chr2R_7731384_7731481 2.70 6.52 1.67 7.14 6.06 0.00 2.70 4.35 5.05 0.00 0.00 4.82 3.45 2.70 6.82 2.74 0.00 0.00 2.00 4.55 4.55 6.78 3.23 0.00 0.00 5.77 9.76 21.43 2.67 1.41 3.64 0.00 3.17 6.49 9.52 2.00 8.06 0.00 2.00 1.45 0.00 8.05 2.94 0.00 0.00 2.70 0.00 2.22 2.53 0.00 0.00 0.00 0.00 5.88 3.39 0.00 5.13 0.00 K cassette unc-13,CRE_chr4_904268_906381,I_chr4_904268_919018,I_chr4_904747_906385,REI_chr4_906314_906385,I_chr4_906518_906708,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_904268_919018 chr4_904268_906385;chr4_906518_919018 chr4_906386_906517 chr4_904196_904267;chr4_919019_919102 96.15 100.00 96.15 87.61 96.88 97.62 97.35 98.90 96.77 92.00 95.45 95.54 83.78 97.78 100.00 98.63 97.83 98.00 98.25 96.77 95.24 87.50 95.51 98.18 92.21 98.44 91.67 91.80 75.61 98.25 96.91 95.45 98.36 95.65 93.48 87.88 91.84 97.83 97.96 93.75 92.16 99.02 97.22 94.74 95.00 90.00 97.62 93.98 96.63 91.67 93.42 92.31 96.15 100.00 100.00 96.67 92.16 96.77 K jcn_only_AD RpL29,I_chr2R_17184688_17191389 chr2R + chr2R_17181384_17181558;chr2R_17181295_17181558 chr2R_17181380_17181558 chr2R_17181559_17181664;chr2R_17181294_17181294 98.11 98.22 98.29 98.92 98.16 97.94 98.79 98.71 98.63 97.58 98.23 98.15 97.83 98.71 98.57 98.53 98.51 98.10 98.32 98.25 98.47 99.37 97.16 97.84 96.87 98.42 93.88 97.66 97.27 98.62 98.13 96.18 97.55 98.53 96.60 97.45 97.31 97.54 96.13 98.59 96.98 98.67 98.43 97.59 98.11 96.72 97.59 97.63 98.62 97.66 98.51 97.52 97.96 95.21 98.33 96.69 98.46 97.39 K cassette syd,I_chr3L_7924891_7925400 chr3L - chr3L_7926335_7928477 chr3L_7926335_7926870;chr3L_7926892_7928477 chr3L_7926871_7926891 chr3L_7926098_7926334;chr3L_7928478_7929184 4.82 NA 5.88 26.32 7.14 NA 0.00 7.41 4.88 6.67 5.56 10.00 7.14 7.69 0.00 4.76 NA NA 0.00 21.43 0.00 0.00 3.23 4.17 10.53 NA 10.00 NA 4.35 6.45 0.00 NA 5.00 4.76 6.67 4.35 4.76 NA 6.90 4.00 NA 0.00 NA 0.00 0.00 NA NA 12.50 4.35 NA 3.57 NA NA NA 10.00 NA NA NA K jcn_only_AA CG13902,I_chr3L_840962_841041 chr3L - chr3L_840962_841041;chr3L_840970_841041 chr3L_840991_841041 chr3L_841042_841141;chr3L_840862_840961 91.61 94.59 90.62 96.36 NA 85.71 94.12 93.06 93.59 88.89 94.12 95.65 90.32 93.33 89.74 92.68 100.00 89.47 100.00 93.55 83.33 72.73 94.12 91.18 95.24 94.44 96.97 90.00 91.67 89.80 80.56 89.58 92.73 94.23 95.45 86.05 82.93 84.00 91.89 89.39 94.34 93.67 86.67 88.37 89.13 89.86 95.24 91.55 84.38 85.29 86.05 93.10 77.27 67.86 91.84 94.29 86.21 94.37 K jcn_only_AD CG4511,RI_chr3R_6680759_6681015 chr3R + chr3R_6680755_6681015 chr3R_6680759_6681015 chr3R_6681016_6681115;chr3R_6680659_6680754 1.85 1.37 1.78 1.18 0.70 1.78 3.00 3.32 1.60 4.29 3.60 3.04 4.21 1.61 1.83 2.27 1.95 3.12 4.17 1.81 0.74 2.27 1.99 0.56 1.37 1.69 1.30 2.70 2.59 1.85 3.37 3.33 1.65 2.71 0.85 2.06 2.35 0.00 1.30 3.41 0.90 2.79 1.59 1.64 0.83 3.87 2.06 2.05 1.22 1.60 2.96 0.84 2.47 3.23 3.53 1.41 1.74 1.60 K intron_retention CG6236 chr3R - chr3R_11151958_11152013 chr3R_11151957_11151958;chr3R_11152013_11152014 chr3R_11151653_11151957;chr3R_11152014_11152374 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention argos chr3L - chr3L_16465475_16475780 chr3L_16465474_16465475;chr3L_16475780_16475781 chr3L_16464921_16465474;chr3L_16475781_16476882 0.00 NA NA 0.00 NA 0.00 NA 3.85 0.00 NA NA 0.00 NA 0.00 0.00 NA NA NA NA 2.94 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K alternative_acceptor ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13413922_13414338;chr2R_13413919_13414338 chr2R_13413823_13414338 chr2R_13414339_13414406;chr2R_13412209_13413822 1.27 0.00 3.12 3.96 3.08 1.59 2.63 1.12 2.55 0.00 3.33 0.73 1.89 2.00 1.27 0.00 1.59 1.49 0.00 0.81 3.23 0.00 1.38 0.00 0.00 1.64 1.01 3.92 2.86 1.00 0.00 0.00 0.82 0.00 0.00 0.00 0.56 1.08 1.64 0.00 2.27 1.47 1.75 1.05 1.41 1.32 0.00 0.92 1.74 1.61 0.89 1.75 1.67 0.00 1.23 0.00 2.04 2.86 N alternative_acceptor CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789733_9789790;chr2L_9789740_9789790;chr2L_9789694_9789790;chr2L_9789718_9789790;chr2L_9789598_9789790 chr2L_9789751_9789790 chr2L_9789791_9789832;chr2L_9789594_9789597 3.23 6.67 5.71 6.98 4.76 0.00 9.62 5.08 8.22 0.00 0.00 1.96 9.09 0.00 2.94 0.00 4.17 0.00 3.45 4.62 0.00 3.45 0.00 0.00 3.23 0.00 1.96 4.35 3.45 0.00 6.67 4.76 0.00 3.92 3.85 0.00 5.71 4.17 2.70 4.92 0.00 7.55 3.85 0.00 0.00 0.00 0.00 4.26 4.76 4.35 2.63 3.45 0.00 0.00 2.70 0.00 4.55 0.00 K cassette l(2)gl,I_chr2L_15712_16650,I_chr2L_17208_18260,I_chr2L_17213_21135,RI_chr2L_20021_20830,I_chr2L_20974_21065 chr2L - chr2L_11345_11778 chr2L_11345_11409;chr2L_11519_11778 chr2L_11410_11518 chr2L_9905_11344;chr2L_11779_12221 100.00 100.00 100.00 98.04 93.33 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 96.43 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention I_chrX_2609471_2609546,fs(1)Yb,fs(1)Ya,CG2709,RI_chrX_2622297_2622430,RI_chrX_2622435_2622577 chrX + chrX_2614883_2614941 chrX_2614882_2614883;chrX_2614941_2614942 chrX_2614472_2614882;chrX_2614942_2617158 3.85 NA 6.67 0.00 0.00 NA NA 19.05 12.20 NA 0.00 0.00 NA NA 7.14 13.33 NA NA 6.67 0.00 NA NA 0.00 9.52 NA 0.00 20.00 NA NA NA 7.14 NA 0.00 11.11 0.00 NA 2.94 0.00 NA 13.64 NA 0.00 NA NA NA NA NA NA 10.34 NA 4.76 NA NA NA 0.00 NA NA NA K intron_retention I_chr3R_16141663_16144698,CG5077,I_chr3R_16147605_16147670 chr3R + chr3R_16145723_16145936 chr3R_16145722_16145723;chr3R_16145936_16145937 chr3R_16145491_16145722;chr3R_16145937_16146173 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.80 0.53 0.00 0.00 0.00 0.00 0.00 1.26 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 2.52 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 1.32 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 K intron_retention CG9684 chr3R - chr3R_4185969_4186022 chr3R_4185968_4185969;chr3R_4186022_4186023 chr3R_4185680_4185968;chr3R_4186023_4186228 15.68 11.11 13.79 55.56 13.33 16.67 20.51 25.00 21.05 NA 0.00 13.33 9.52 18.52 16.67 17.02 14.29 15.15 21.43 22.22 7.69 21.05 18.42 14.29 28.00 52.63 6.67 16.67 54.55 10.53 18.18 15.00 10.53 18.37 19.05 27.27 13.79 4.35 9.09 5.56 26.32 12.50 12.00 22.73 9.09 18.42 6.25 10.53 20.34 16.28 8.51 18.52 17.39 9.09 16.22 13.16 7.69 9.09 K jcn_only_AD RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522912_523360;chrX_522912_523215;chrX_522912_523414;chrX_522912_523323;chrX_522912_523389 chrX_522912_523194 chrX_522849_522911;chrX_523415_523436 0.29 0.30 0.28 0.34 0.00 0.00 0.36 0.16 0.40 0.00 0.00 0.00 0.00 0.00 0.36 0.39 1.06 0.00 0.00 0.29 1.16 1.79 0.44 0.00 0.00 0.61 0.55 0.39 0.12 0.36 0.00 0.17 0.00 0.00 0.45 0.00 0.40 0.82 0.37 0.18 0.16 0.14 1.65 0.35 0.54 0.00 0.00 0.00 0.45 0.90 0.88 0.32 0.00 0.80 0.00 0.98 0.74 0.00 K intron_retention Iswi chr2R + chr2R_8524287_8524348 chr2R_8524286_8524287;chr2R_8524348_8524349 chr2R_8524226_8524286;chr2R_8524349_8524495 66.67 NA NA 78.95 NA NA 62.50 50.00 50.00 NA NA 66.67 42.86 88.89 80.00 75.00 NA NA 63.64 73.33 NA NA NA NA NA 92.86 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA 55.00 NA NA NA NA NA NA 78.95 NA NA NA NA NA NA NA NA NA K intron_retention CG14721,CG14722 chr3R + chr3R_7562166_7562224 chr3R_7562165_7562166;chr3R_7562224_7562225 chr3R_7561641_7562165;chr3R_7562225_7562640 0.00 0.00 2.38 6.25 9.09 0.00 0.00 6.67 3.03 1.85 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 3.03 8.06 0.00 1.19 0.00 0.00 0.00 0.00 1.96 0.00 5.00 2.94 0.00 3.23 1.71 2.35 1.41 0.00 3.03 0.00 1.72 0.00 1.79 1.22 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.06 K alternative_acceptor CG1746,I_chr3R_27042457_27043461,RNaseP:RNA,RI_chr3R_27044771_27045268 chr3R - chr3R_27042457_27043461 chr3R_27042900_27043461 chr3R_27043462_27043561;chr3R_27042432_27042456 100.00 99.95 100.00 100.00 99.92 100.00 99.94 99.96 100.00 99.91 100.00 99.96 100.00 100.00 100.00 99.95 99.92 100.00 100.00 99.97 100.00 99.35 100.00 100.00 100.00 100.00 100.00 99.91 99.82 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.96 100.00 99.96 99.95 100.00 99.97 100.00 100.00 100.00 99.96 99.96 100.00 100.00 99.93 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention pzg,RI_chr3L_21282647_21282712 chr3L + chr3L_21282647_21282705 chr3L_21282646_21282647;chr3L_21282705_21282706 chr3L_21282547_21282646;chr3L_21282706_21283181 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 K alternative_donor tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563503_565293 chr3R_563503_565232 chr3R_563488_563502;chr3R_565294_565301 52.38 NA 60.00 36.84 NA NA 62.50 64.29 39.02 NA NA 66.67 44.44 66.67 58.33 30.77 NA NA NA 63.64 NA NA NA NA NA 30.00 NA NA NA NA 58.33 NA NA 50.00 NA NA 33.33 NA NA NA NA 52.38 NA NA NA NA NA NA 57.14 NA NA 36.36 NA NA 45.00 NA NA NA K jcn_only_AD pAbp,I_chr2R_14027838_14028996 chr2R + chr2R_14028460_14028992 chr2R_14028922_14028992 chr2R_14028993_14029177;chr2R_14028264_14028459 58.41 57.92 57.49 53.04 62.28 56.41 55.21 45.74 46.33 81.48 51.52 50.55 52.20 44.51 57.34 42.69 58.82 50.49 55.10 60.00 49.23 75.16 77.94 92.37 88.51 53.33 76.00 80.37 79.64 58.41 54.48 46.67 40.38 59.17 67.65 72.86 86.71 67.43 87.20 68.97 44.55 55.07 60.00 46.38 77.08 55.56 68.00 45.16 56.03 72.65 70.31 76.64 75.21 58.93 53.59 73.05 86.11 39.39 K alternative_acceptor CG14646 chr3R + chr3R_216292_216399 chr3R_216292_216371 chr3R_216265_216291;chr3R_216400_216431 100.00 96.88 96.15 96.67 94.74 100.00 96.00 96.97 98.11 100.00 96.00 100.00 95.45 100.00 95.24 100.00 100.00 100.00 95.00 100.00 95.24 100.00 94.29 96.77 100.00 100.00 96.97 100.00 100.00 100.00 94.74 94.74 100.00 96.30 94.44 100.00 100.00 100.00 100.00 100.00 100.00 92.11 94.44 97.30 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 96.30 100.00 100.00 100.00 96.97 100.00 K jcn_only_AA und chr2L + chr2L_9763735_9763838 chr2L_9763735_9763835 chr2L_9763520_9763734;chr2L_9763839_9764648 99.46 99.43 98.59 98.83 100.00 100.00 99.52 98.71 99.40 98.78 100.00 98.82 99.39 100.00 100.00 99.18 100.00 100.00 98.94 99.72 99.19 98.68 100.00 99.58 100.00 100.00 99.46 99.60 98.88 100.00 100.00 99.42 98.96 99.44 99.35 99.39 99.53 98.80 100.00 100.00 99.59 99.68 100.00 100.00 99.20 99.14 99.48 99.64 99.64 98.91 99.12 99.25 99.14 99.26 99.43 99.42 99.54 100.00 K cassette KCNQ,I_chr2R_6034329_6034563,I_chr2R_6039928_6040408 chr2R - chr2R_6034329_6034563 chr2R_6034329_6034395;chr2R_6034500_6034563 chr2R_6034396_6034499 chr2R_6034229_6034328;chr2R_6034564_6034663 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 NA NA NA NA 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA NA K jcn_only_AA CG3532 chr3R + chr3R_7840163_7840234 chr3R_7840163_7840225 chr3R_7840045_7840162;chr3R_7840235_7840251 100.00 97.67 100.00 100.00 95.00 100.00 98.11 100.00 100.00 100.00 100.00 98.44 100.00 100.00 100.00 100.00 NA 100.00 95.00 98.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 96.55 100.00 100.00 100.00 98.11 96.30 94.59 100.00 100.00 100.00 100.00 97.22 98.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.36 100.00 100.00 100.00 100.00 97.62 100.00 100.00 K alternative_acceptor SWAP,RI_chrX_938935_938985,noncoding_21279,I_chrX_941459_982652,CG42259 chrX + chrX_940594_940668 chrX_940594_940651 chrX_940506_940593;chrX_940669_940972 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 K alternative_acceptor RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12922514_12923162;chr2R_12922514_12923159 chr2R_12922514_12922850 chr2R_12922340_12922513;chr2R_12923163_12923912 98.33 98.48 98.39 99.20 98.33 90.32 95.74 99.13 99.36 98.18 96.97 98.54 98.46 97.18 97.33 98.78 96.77 98.39 97.44 97.58 98.11 98.69 99.00 96.00 98.15 98.67 96.23 98.25 100.00 98.96 98.65 96.97 99.38 98.35 98.73 97.98 98.13 98.41 99.07 96.95 100.00 99.33 98.51 98.95 97.67 98.46 94.44 99.39 99.24 98.28 97.75 95.83 97.96 95.24 98.81 94.59 96.15 97.50 K intron_retention Khc-73 chr2R - chr2R_11407842_11409346 chr2R_11407841_11407842;chr2R_11409346_11409347 chr2R_11407431_11407841;chr2R_11409347_11409445 0.00 0.00 0.00 3.17 0.00 0.00 0.00 3.28 6.32 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 2.56 0.00 5.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.90 0.00 0.00 0.00 0.00 0.00 0.00 4.11 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15755345_15755409;chrX_15754356_15755409 chrX_15754284_15755409 chrX_15755410_15755509;chrX_15754256_15754283 93.65 95.50 94.50 97.95 90.11 94.68 89.52 94.86 91.03 91.84 92.75 89.01 85.26 93.65 91.84 98.75 94.95 97.40 96.21 94.06 98.59 82.00 94.37 85.88 93.90 97.56 95.69 90.20 93.55 93.24 94.56 89.80 86.15 92.13 94.44 98.33 93.83 93.90 97.33 85.27 89.66 92.19 87.39 93.84 91.18 85.86 95.29 87.50 93.60 95.74 92.80 90.23 100.00 95.83 94.66 97.40 93.52 89.71 K cassette eIF5B,I_chr3L_3429084_3443457,I_chr3L_3432366_3445364 chr3L - chr3L_3429084_3443457 chr3L_3429084_3432203;chr3L_3432366_3443457 chr3L_3432204_3432365 chr3L_3428984_3429083;chr3L_3443458_3443557 100.00 100.00 100.00 99.62 100.00 99.44 100.00 99.70 100.00 99.19 100.00 100.00 100.00 99.48 100.00 99.65 100.00 99.49 100.00 99.77 100.00 99.49 99.69 100.00 100.00 99.50 100.00 100.00 98.19 100.00 100.00 100.00 99.71 99.70 100.00 100.00 99.62 100.00 100.00 100.00 100.00 99.78 99.46 100.00 100.00 100.00 100.00 100.00 99.75 99.68 100.00 100.00 99.51 100.00 100.00 99.64 99.67 100.00 K alternative_donor CG33558,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,EI_chr2R_2820947_2821570,CREI_chr2R_2832933_2850384 chr2R - chr2R_2817876_2818978;chr2R_2817876_2819347 chr2R_2817876_2818567 chr2R_2817851_2817875;chr2R_2819348_2819447 26.32 31.58 28.57 25.00 28.57 35.29 50.00 47.62 24.56 29.63 26.32 29.69 41.67 43.48 25.00 33.33 27.59 40.00 36.36 25.76 26.09 36.84 24.69 21.31 48.39 30.77 21.62 46.15 31.58 48.48 23.33 20.00 25.40 31.43 25.64 27.66 21.69 23.68 27.12 26.74 22.50 22.22 25.00 37.21 32.65 20.90 13.51 29.85 25.00 24.56 26.19 25.00 19.44 25.00 34.62 19.23 14.71 23.53 K alternative_acceptor Ppt1,REI_chrX_8583323_8583467 chrX - chrX_8583323_8583467 chrX_8583328_8583467 chrX_8583468_8583567;chrX_8583223_8583322 100.00 100.00 100.00 100.00 95.45 100.00 100.00 96.30 97.62 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.53 100.00 93.33 97.62 100.00 100.00 96.97 100.00 100.00 K alternative_donor Cdk4,RI_chr2R_12471503_12471656 chr2R + chr2R_12467202_12468346;chr2R_12467432_12468346;chr2R_12467241_12468346;chr2R_12467275_12468346;chr2R_12467474_12468346;chr2R_12467225_12468346;chr2R_12467227_12468346;chr2R_12467261_12468346 chr2R_12467039_12468346 chr2R_12468347_12468520;chr2R_12467030_12467038 40.00 50.00 61.11 53.85 20.00 53.85 25.00 40.00 54.35 66.67 66.67 58.97 54.55 37.50 63.16 53.12 41.67 37.50 54.55 55.10 57.14 42.86 20.00 23.08 12.50 53.33 28.57 16.67 16.67 11.11 50.00 25.00 35.71 52.94 10.00 25.00 47.37 45.45 50.00 17.65 30.00 56.67 45.45 28.57 40.00 7.14 25.00 15.38 52.38 26.67 18.75 40.00 25.00 33.33 33.33 40.00 26.67 20.00 K intron_retention ytr,eIF6,RI_chr2R_19738391_19738783 chr2R - chr2R_19736323_19738079 chr2R_19736322_19736323;chr2R_19738079_19738080 chr2R_19734681_19736322;chr2R_19738080_19738092 22.73 20.00 7.14 60.00 NA NA NA 63.64 12.50 NA NA 47.06 NA NA NA NA NA NA NA 36.84 NA 20.00 38.10 23.08 30.00 NA 46.15 32.00 11.76 22.73 NA 25.00 18.42 36.36 15.79 20.00 20.00 21.05 15.00 34.62 15.38 38.46 NA 29.41 21.43 22.73 15.00 17.50 NA 30.00 29.17 NA 26.09 18.75 NA 0.00 28.57 12.50 K jcn_only_AD ftz-f1,I_chr3L_18790575_18790636 chr3L - chr3L_18746544_18747413 chr3L_18746544_18746932 chr3L_18746285_18746543;chr3L_18747414_18747612 3.61 2.63 0.00 1.23 0.00 0.00 9.09 3.64 3.61 8.70 6.67 6.06 5.00 0.00 4.17 2.27 2.86 0.00 0.00 0.00 0.00 15.15 3.64 2.33 4.55 5.13 4.44 3.33 16.67 0.00 0.00 6.06 5.17 1.64 4.35 16.67 9.09 5.71 0.00 3.53 NA 3.17 0.00 0.00 NA 5.13 4.76 3.92 4.41 3.23 5.36 0.00 0.00 4.76 1.96 7.41 6.45 2.78 K jcn_only_AA Mitf,REI_chr4_1223922_1223965,I_chr4_1225890_1225947 chr4 + chr4_1223922_1223985;chr4_1223922_1224042 chr4_1223922_1223965 chr4_1223822_1223921;chr4_1224043_1224065 3.34 NA 0.00 4.44 14.81 0.00 0.00 6.90 1.54 NA 7.69 2.27 3.85 0.00 0.00 7.41 2.94 NA 5.13 2.86 4.00 NA 0.00 NA NA NA 0.00 NA NA NA 3.23 NA 5.00 3.45 NA NA NA NA NA 7.41 NA 2.63 8.00 NA NA NA NA 0.00 4.44 NA NA NA NA NA 5.56 NA NA NA K jcn_only_AA CG7609,ATPsyn-gamma,I_chr3R_25574492_25574541 chr3R - chr3R_25574471_25574545 chr3R_25574492_25574545 chr3R_25574546_25574564;chr3R_25574392_25574470 92.02 92.08 93.57 93.41 87.26 91.49 88.33 94.09 92.23 85.38 89.56 92.27 86.00 91.79 91.39 92.58 89.67 94.09 91.48 92.06 92.43 92.68 94.74 87.62 86.67 92.02 89.13 82.98 90.80 96.81 92.93 92.02 94.42 93.51 98.11 86.67 83.82 84.96 88.55 94.85 93.44 91.83 94.74 86.81 91.57 95.97 89.05 93.97 95.32 88.29 91.75 82.97 86.73 93.75 93.90 93.14 88.78 92.42 K jcn_only_AD CG30381,RI_chr2R_3817895_3817951,RI_chr2R_3819348_3819403 chr2R - chr2R_3817895_3817956 chr2R_3817895_3817951 chr2R_3817795_3817894;chr2R_3817957_3818051 2.63 3.57 NA NA NA 5.00 NA NA 0.00 NA NA 3.57 9.09 NA 0.00 NA NA 0.00 0.00 10.00 NA 0.00 5.00 6.45 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 3.33 NA 11.43 NA 0.00 NA NA NA 3.03 0.00 NA 0.00 15.00 2.63 NA NA 0.00 NA NA 0.00 NA K intron_retention RpS3,I_chr3R_19184824_19184875 chr3R + chr3R_19185017_19185148 chr3R_19185016_19185017;chr3R_19185148_19185149 chr3R_19184876_19185016;chr3R_19185149_19185700 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.98 100.00 100.00 100.00 99.99 100.00 100.00 100.00 99.97 100.00 100.00 100.00 100.00 100.00 99.99 100.00 100.00 100.00 100.00 99.99 100.00 100.00 100.00 100.00 100.00 99.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.98 100.00 100.00 99.99 100.00 100.00 100.00 99.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG3662,I_chr2L_822032_822857 chr2L + chr2L_821660_822857 chr2L_821659_821660;chr2L_822857_822858 chr2L_821436_821659;chr2L_822858_822957 0.44 0.74 0.53 0.51 0.00 0.52 0.33 0.55 0.48 0.44 0.00 0.65 0.00 0.29 0.26 0.26 0.00 0.00 0.33 0.59 0.32 0.51 0.21 0.47 0.00 0.55 0.72 1.08 0.49 0.00 0.59 0.58 0.48 0.79 0.62 0.29 0.00 1.14 0.36 0.83 0.00 0.45 0.41 0.70 0.35 0.00 0.00 1.23 1.06 0.00 0.43 0.82 0.00 0.00 1.26 0.00 0.56 0.43 K alternative_donor Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2364640;chr2L_2361586_2364480;chr2L_2361586_2364836;chr2L_2361586_2364302;chr2L_2361586_2364594;chr2L_2361586_2364312;chr2L_2361586_2364889 chr2L_2361586_2365060 chr2L_2361486_2361585;chr2L_2365061_2365065 12.90 11.11 15.38 9.86 11.43 21.21 7.94 17.50 17.86 11.11 11.11 15.49 5.88 10.53 9.76 12.90 11.11 12.50 14.89 10.91 10.81 2.86 20.51 18.75 19.23 15.00 21.74 18.75 8.33 17.86 24.44 12.00 2.04 18.42 30.77 25.00 12.82 19.05 10.53 11.43 16.67 16.05 14.29 0.00 16.67 19.57 0.00 8.82 19.75 4.00 25.93 17.24 16.67 6.25 11.36 14.81 10.26 5.56 K intron_retention fws,CG6453 chr2L - chr2L_17480920_17480968 chr2L_17480919_17480920;chr2L_17480968_17480969 chr2L_17480825_17480919;chr2L_17480969_17481046 66.67 NA 80.00 80.00 40.00 66.67 53.33 64.00 67.57 NA 50.00 61.90 NA 66.67 56.25 74.07 63.64 66.67 68.42 63.64 69.23 57.14 NA NA NA 71.43 NA 87.50 91.67 NA 72.73 72.73 88.89 59.09 NA 100.00 62.50 NA 72.73 66.67 NA 64.00 50.00 66.67 NA NA NA 66.67 66.67 60.00 NA 72.73 NA NA 58.82 NA 62.50 56.25 K jcn_only_AA CG9855,RI_chr3R_222522_222581,RI_chr3R_222525_222604,I_chr3R_223384_223429 chr3R - chr3R_222528_222581;chr3R_222525_222581 chr3R_222522_222581 chr3R_222582_222650;chr3R_222457_222521 1.80 4.84 6.90 1.04 2.33 0.00 5.00 1.19 1.89 1.75 4.65 1.14 2.44 0.00 4.41 1.45 0.00 0.00 3.51 1.04 4.44 2.59 1.18 1.33 1.92 4.48 0.00 2.13 1.80 1.23 0.00 1.16 2.08 3.95 2.08 1.49 2.67 2.94 2.35 3.65 1.74 0.00 2.04 1.41 3.19 1.67 0.00 3.83 0.96 4.00 0.00 3.57 1.25 1.52 0.00 3.37 0.00 4.00 K intron_retention Klc,I_chr3L_12741783_12742943,I_chr3L_12741838_12743062 chr3L - chr3L_12740855_12740920 chr3L_12740854_12740855;chr3L_12740920_12740921 chr3L_12740375_12740854;chr3L_12740921_12741041 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.73 0.76 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG34140,CG34140_Mkp,noncoding_9561 chr3L - chr3L_184261_184317 chr3L_184260_184261;chr3L_184317_184318 chr3L_184132_184260;chr3L_184318_184328 5.71 5.56 0.00 5.00 0.00 0.00 11.36 9.09 6.12 0.00 16.67 6.82 0.00 15.00 9.38 0.00 0.00 10.53 0.00 5.13 26.32 0.00 17.50 6.67 17.65 17.39 29.17 29.41 29.41 6.67 2.44 NA 0.00 2.94 6.67 23.53 8.00 0.00 0.00 5.00 7.69 8.89 5.56 0.00 NA 6.67 0.00 NA 6.67 0.00 9.09 3.57 0.00 NA 5.71 7.41 0.00 0.00 K intron_retention crol,I_chr2L_11799403_11802904 chr2L - chr2L_11800323_11802370 chr2L_11800322_11800323;chr2L_11802370_11802371 chr2L_11800155_11800322;chr2L_11802371_11802412 40.77 40.71 42.44 28.17 38.12 40.58 46.75 47.80 37.36 56.52 43.07 53.82 46.46 42.55 42.02 50.62 43.33 28.83 46.36 45.57 43.90 32.14 35.71 35.15 33.99 39.58 36.63 27.78 43.56 38.14 51.82 38.30 42.86 43.89 34.55 35.11 35.07 32.22 34.09 41.98 52.94 40.77 47.46 38.62 37.70 51.47 38.00 56.00 45.17 40.00 41.57 34.68 37.68 49.38 37.29 44.79 37.04 52.78 K intron_retention spn-E,I_chr3R_11663703_11663759 chr3R + chr3R_11663403_11663459 chr3R_11663402_11663403;chr3R_11663459_11663460 chr3R_11663189_11663402;chr3R_11663460_11663702 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 3.70 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 2.86 NA 0.00 0.00 0.00 0.00 NA 0.00 14.81 8.33 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA K intron_retention noncoding_4379 chr2R + chr2R_149366_149435 chr2R_149365_149366;chr2R_149435_149436 chr2R_149298_149365;chr2R_149436_149850 22.22 22.54 15.38 42.34 16.09 23.38 17.19 20.85 19.93 12.50 23.08 19.70 12.88 19.31 19.19 23.37 14.88 18.02 23.68 15.76 27.59 22.22 31.11 22.64 30.23 22.58 39.62 37.84 51.06 25.00 19.14 21.28 28.26 26.29 23.73 36.59 17.24 28.57 20.51 19.28 33.33 22.76 24.32 26.92 22.22 16.67 21.13 15.79 21.60 27.12 28.99 20.00 18.42 19.30 16.13 30.23 28.57 16.36 K intron_retention Nipped-B,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_616057_617208 chr2R_616056_616057;chr2R_617208_617209 chr2R_615957_616056;chr2R_617209_617308 35.71 NA NA NA NA NA 35.71 NA 38.46 NA NA 16.67 NA 35.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 21.43 NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA K alternative_donor I_chr3L_1494947_1496080,pUf68,cue chr3L - chr3L_1504321_1504387 chr3L_1504321_1504383 chr3L_1503987_1504320;chr3L_1504388_1505792 0.00 0.00 0.00 3.51 2.56 2.00 2.82 1.09 1.28 2.22 0.00 1.77 3.85 2.17 0.00 2.11 0.00 0.00 0.00 1.85 0.00 7.55 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 2.04 1.74 0.00 0.89 2.88 0.00 1.01 4.44 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention TwdlG,RI_chr3R_75576_75628 chr3R - chr3R_75568_75628 chr3R_75567_75568;chr3R_75628_75629 chr3R_75476_75567;chr3R_75629_75728 8.63 NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA K alternative_donor Cctgamma chr3R + chr3R_12473409_12473557;chr3R_12473479_12473557;chr3R_12473420_12473557;chr3R_12473424_12473557;chr3R_12473464_12473557 chr3R_12473318_12473557 chr3R_12473558_12473651;chr3R_12473311_12473317 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Mcm5 chr3R + chr3R_6615704_6615761 chr3R_6615703_6615704;chr3R_6615761_6615762 chr3R_6614593_6615703;chr3R_6615762_6616583 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.74 K intron_retention CG32666 chrX + chrX_11445381_11445804 chrX_11445380_11445381;chrX_11445804_11445805 chrX_11445062_11445380;chrX_11445805_11446973 0.00 2.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 1.75 0.00 0.00 2.86 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor vir-1,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,noncoding_2764,I_chr2L_12421830_12423260 chr2L - chr2L_12421830_12423322;chr2L_12421830_12423333;chr2L_12421830_12423278 chr2L_12421830_12423260 chr2L_12421816_12421829;chr2L_12423334_12423360 1.43 1.00 2.22 1.09 1.68 1.96 2.02 2.34 1.02 0.96 0.93 1.31 2.23 2.29 3.24 1.43 1.09 1.92 2.02 1.05 0.89 0.53 0.93 1.72 2.27 1.94 1.94 0.88 1.16 0.72 1.27 0.61 1.32 2.05 1.32 2.70 0.56 0.63 3.80 1.68 1.99 1.93 1.19 1.48 2.94 0.41 0.37 0.65 1.54 1.52 2.02 1.09 1.60 1.95 1.89 0.71 0.52 0.96 K jcn_only_AA CG15107,I_chr2R_14859289_14859333 chr2R - chr2R_14859289_14859333;chr2R_14859281_14859333 chr2R_14859269_14859333 chr2R_14859334_14859398;chr2R_14859203_14859268 31.54 34.38 38.10 30.65 27.59 34.15 35.85 33.78 28.21 NA 32.26 38.67 27.50 21.62 46.67 24.36 42.11 31.82 32.00 33.09 35.00 30.43 22.64 31.91 33.33 28.36 34.15 24.24 30.00 19.67 36.54 32.22 20.45 34.92 43.90 29.09 30.43 20.69 33.96 22.64 22.50 27.96 27.66 31.25 27.06 39.25 35.42 34.29 26.74 24.07 36.59 44.83 35.00 31.25 23.21 38.89 29.03 25.00 K multi_cassette Nedd4,I_chr3L_17534127_17534409,I_chr3L_17534504_17535990,I_chr3L_17535485_17536604,I_chr3L_17536186_17536604,I_chr3L_17536713_17536777,I_chr3L_17536813_17536863 chr3L + chr3L_17534504_17536863 chr3L_17534504_17535299;chr3L_17535485_17535650;chr3L_17535913_17536604;chr3L_17536713_17536863 chr3L_17535300_17535484;chr3L_17535651_17535912;chr3L_17536605_17536712 chr3L_17534419_17534503;chr3L_17536864_17536877 90.91 83.33 75.00 47.06 75.00 80.00 35.71 90.91 100.00 NA 100.00 100.00 100.00 80.00 80.00 100.00 100.00 80.00 75.00 88.89 80.00 100.00 100.00 75.00 80.00 100.00 66.67 100.00 75.00 75.00 100.00 NA 100.00 80.00 100.00 100.00 80.00 100.00 66.67 100.00 66.67 83.33 100.00 100.00 100.00 100.00 75.00 100.00 75.00 100.00 100.00 80.00 100.00 66.67 100.00 100.00 100.00 80.00 K alternative_donor tna chr3L + chr3L_10851787_10863140 chr3L_10852155_10863140 chr3L_10863141_10863453;chr3L_10851215_10851786 30.00 30.77 50.00 37.50 36.36 25.00 44.44 40.54 28.00 NA 20.00 41.94 25.93 57.14 27.27 39.47 31.82 31.58 28.57 37.50 25.00 26.32 7.41 11.76 NA 40.00 20.00 33.33 47.06 25.00 40.00 NA 35.71 37.21 33.33 30.00 7.69 6.67 14.29 29.41 NA 34.21 31.58 20.00 22.22 25.00 NA 56.25 35.29 5.56 7.69 7.69 NA NA 34.78 NA 9.09 22.22 K intron_retention CG9776 chr3R - chr3R_158200_158713 chr3R_158199_158200;chr3R_158713_158714 chr3R_158012_158199;chr3R_158714_158881 8.01 8.33 7.32 3.12 6.25 14.71 20.59 7.58 11.94 NA 6.90 6.58 21.05 21.88 15.22 15.00 15.62 6.25 19.05 11.59 13.79 0.00 6.38 14.29 9.38 5.00 11.63 0.00 0.00 5.71 10.00 9.52 10.42 10.20 5.56 0.00 5.77 6.90 6.82 23.26 10.00 9.88 14.29 6.67 11.76 0.00 6.90 6.25 12.31 14.71 6.90 13.79 2.78 4.76 16.22 6.67 0.00 7.69 K intron_retention cno,I_chr3R_999718_999986,I_chr3R_999737_999777,RI_chr3R_1009937_1010000 chr3R - chr3R_1009706_1010000 chr3R_1009705_1009706;chr3R_1010000_1010001 chr3R_1009499_1009705;chr3R_1010001_1010100 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 NA 0.00 0.00 NA 2.78 K alternative_donor CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25318474_25319136;chr3R_25318474_25319163;chr3R_25318474_25319142;chr3R_25318474_25318925;chr3R_25318474_25318971;chr3R_25318474_25319004;chr3R_25318474_25319167 chr3R_25318474_25319093 chr3R_25318374_25318473;chr3R_25319168_25319224 7.91 7.10 14.12 10.94 5.42 8.97 11.67 1.15 5.23 4.72 16.07 9.97 7.53 11.48 6.67 10.79 7.69 7.04 7.64 9.82 17.73 5.08 6.38 6.14 10.00 13.64 5.33 7.14 10.79 6.88 9.68 9.72 19.30 8.33 7.78 6.02 3.27 8.94 4.67 8.26 25.86 7.16 9.56 6.35 11.93 11.26 4.74 25.47 6.55 5.39 6.20 6.86 9.18 7.98 7.91 8.05 5.49 13.83 K jcn_only_AD exba,RI_chr3R_1423238_1423301,I_chr3R_1425087_1425925,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1423238_1423493 chr3R_1423238_1423301 chr3R_1423138_1423237;chr3R_1423494_1423659 0.19 0.39 0.00 0.11 0.00 0.53 0.32 0.00 0.00 0.38 0.19 0.12 0.78 0.00 0.18 0.11 0.00 0.00 0.15 0.24 0.00 1.80 0.00 0.00 0.31 0.00 0.16 0.82 0.00 0.00 0.43 0.34 0.33 0.00 0.61 0.00 0.00 0.24 0.21 0.36 0.70 0.00 0.22 0.33 0.86 0.39 0.00 2.17 0.19 0.14 0.31 0.38 0.00 0.31 0.69 0.18 0.31 0.73 K intron_retention Hr78,I_chr3L_21490089_21490390,CG33214 chr3L - chr3L_21490008_21490390 chr3L_21490007_21490008;chr3L_21490390_21490391 chr3L_21489989_21490007;chr3L_21490391_21490490 35.71 NA NA 53.85 NA NA 22.22 33.33 37.50 NA NA 50.00 29.41 33.33 NA 30.43 NA NA 40.00 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA 36.84 33.33 NA NA NA NA NA 23.53 NA NA NA NA NA 35.71 NA NA NA N cassette CG7777,I_chr2R_7323928_7328572 chr2R + chr2R_7327836_7329439 chr2R_7327836_7328572;chr2R_7328996_7329439 chr2R_7328573_7328995 chr2R_7327692_7327835;chr2R_7329440_7329695 100.00 100.00 100.00 91.26 100.00 95.04 90.60 95.95 96.15 100.00 100.00 97.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.70 93.66 89.00 95.63 100.00 100.00 100.00 92.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.02 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.48 100.00 100.00 100.00 K alternative_donor Atg7,I_chr2R_14508838_14508931 chr2R - chr2R_14508838_14510509 chr2R_14508838_14508931 chr2R_14508738_14508837;chr2R_14510510_14510674 40.00 40.00 50.00 30.00 52.94 50.00 35.14 57.58 60.00 66.67 28.57 35.71 52.94 47.06 44.00 59.09 52.94 39.13 52.38 46.34 34.78 25.81 31.71 37.04 33.33 44.44 34.62 41.18 23.81 19.05 47.83 31.82 20.00 34.88 35.00 40.00 30.30 56.25 26.47 37.84 22.22 43.75 50.00 40.00 26.09 40.00 32.00 33.33 58.62 30.77 46.15 52.94 41.18 33.33 46.15 40.00 40.62 58.82 K alternative_donor Trf4-1,I_chrX_8455293_8457185,RI_chrX_8455791_8457185,R_chrX_8455801_8457185,I_chrX_8455902_8457185,I_chrX_8459198_8459266 chrX + chrX_8454992_8457185;chrX_8455100_8457185 chrX_8454847_8457185 chrX_8457186_8457285;chrX_8454674_8454846 83.33 90.48 84.62 93.18 88.24 88.00 87.88 87.50 85.71 75.00 54.55 89.13 88.89 91.67 87.50 82.05 85.00 80.95 86.96 81.48 88.24 70.00 82.61 87.50 94.44 72.22 87.50 63.64 66.67 81.82 88.89 53.85 53.85 90.48 92.86 81.25 78.57 85.71 83.33 78.95 53.85 82.69 91.67 75.00 33.33 76.92 100.00 40.00 88.46 75.00 91.67 94.74 81.82 81.82 88.46 78.57 50.00 44.44 K intron_retention I_chrX_1757755_1757801,CG14817,I_chrX_1770939_1771001,RI_chrX_1770945_1771037,RI_chrX_1773382_1773444,trr,I_chrX_1793073_1794406,RI_chrX_1795648_1795745 chrX - chrX_1770945_1771037 chrX_1770944_1770945;chrX_1771037_1771038 chrX_1770845_1770944;chrX_1771038_1771101 97.50 98.11 97.30 98.08 96.55 96.77 98.00 96.08 98.81 100.00 100.00 100.00 96.30 96.67 97.50 100.00 96.15 97.50 96.43 97.67 100.00 100.00 100.00 100.00 93.33 97.06 100.00 100.00 83.64 95.56 100.00 97.44 98.53 95.74 96.67 93.75 95.79 97.67 96.92 95.71 100.00 94.81 100.00 100.00 98.57 98.61 96.88 97.37 98.18 100.00 97.62 96.30 92.59 92.73 94.29 97.18 98.97 97.44 K alternative_donor RpL18A,I_chr2R_13434492_13434554,I_chr2R_13434492_13434576 chr2R - chr2R_13434492_13434576;chr2R_13434492_13434913 chr2R_13434492_13434554 chr2R_13434392_13434491;chr2R_13434914_13434994 0.07 0.00 0.07 0.08 0.00 0.04 0.23 0.06 0.06 0.00 0.00 0.07 0.06 0.00 0.06 0.04 0.07 0.00 0.00 0.03 0.00 0.32 1.03 0.23 0.24 0.00 0.82 0.23 0.68 0.16 0.06 0.11 0.06 0.03 0.00 0.00 0.13 0.00 0.17 0.06 0.15 0.02 0.05 0.10 0.08 0.14 0.22 0.09 0.08 0.75 1.79 0.00 0.10 0.85 0.00 0.15 0.25 0.08 K alternative_acceptor CG8949,I_chrX_16964662_16964766,I_chrX_16971501_16971713 chrX - chrX_16964656_16964778 chrX_16964662_16964778 chrX_16964779_16964866;chrX_16964562_16964655 82.35 81.58 87.10 93.18 95.00 80.77 90.62 83.87 81.33 67.86 72.00 88.14 88.24 80.77 82.76 84.00 83.33 90.91 88.89 81.97 91.30 80.43 85.71 87.23 90.48 78.26 82.22 80.00 64.71 81.82 77.78 82.35 78.12 83.33 86.67 83.87 81.16 79.55 82.00 81.25 86.67 87.72 94.12 82.98 81.82 87.10 80.56 81.25 79.07 81.63 91.84 81.48 72.73 83.33 80.00 84.00 86.21 67.74 K intron_retention RpS15,I_chr2R_12457890_12458124 chr2R - chr2R_12457890_12458130 chr2R_12457889_12457890;chr2R_12458130_12458131 chr2R_12457790_12457889;chr2R_12458131_12458224 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor eas,REI_chrX_16172581_16175010,REI_chrX_16172581_16177702 chrX + chrX_16174025_16175010 chrX_16174025_16174918 chrX_16173942_16174024;chrX_16175011_16175110 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 K intron_retention I_chr2L_12099367_12099435,Aats-thr chr2L + chr2L_12104383_12104491 chr2L_12104382_12104383;chr2L_12104491_12104492 chr2L_12104366_12104382;chr2L_12104492_12104552 22.22 NA 26.32 18.18 NA 22.22 24.14 28.57 25.00 NA NA 26.32 NA 38.46 22.22 19.05 13.33 41.67 27.27 13.16 NA 20.00 13.04 22.22 28.57 27.59 22.22 29.17 31.82 6.25 17.24 NA NA 33.33 NA 46.15 16.67 0.00 14.29 0.00 26.32 21.43 NA 20.00 NA 12.50 NA NA 6.90 NA 20.00 25.00 NA NA 38.10 NA NA NA K jcn_only_AA htt,I_chr3R_24527763_24528033,I_chr3R_24542203_24543363 chr3R + chr3R_24527763_24531256 chr3R_24527763_24528033 chr3R_24527663_24527762;chr3R_24531257_24531580 0.00 0.00 2.04 0.00 3.70 0.00 0.00 2.22 1.45 NA NA 0.00 0.00 NA 0.00 1.96 2.63 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.85 0.00 0.00 NA 3.57 0.00 NA 10.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention CG7945,RI_chr3L_15515681_15516932,RI_chr3L_15516824_15516932 chr3L - chr3L_15515681_15516611 chr3L_15515680_15515681;chr3L_15516611_15516612 chr3L_15515660_15515680;chr3L_15516612_15517201 14.84 NA NA NA 0.00 NA 28.57 14.29 16.67 NA NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA 15.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.53 K jcn_only_AA RpL8,I_chr3L_2587513_2587750,I_chr3L_2587600_2587750,RI_chr3L_2587690_2587750,I_chr3L_2589746_2592161 chr3L + chr3L_2587514_2587717;chr3L_2587514_2587575 chr3L_2587514_2587750 chr3L_2587500_2587513;chr3L_2587751_2587850 99.90 99.92 99.84 99.96 99.96 99.98 99.84 99.88 99.91 99.89 99.98 99.89 99.73 99.88 99.98 99.89 99.92 99.86 99.92 99.94 99.91 99.58 99.93 99.89 99.90 99.86 99.98 99.92 99.81 99.84 99.67 99.77 99.75 99.86 100.00 100.00 99.89 99.94 99.98 99.93 99.74 99.91 99.89 99.89 99.90 99.76 99.85 99.82 99.78 99.92 99.91 99.92 99.91 99.78 99.95 99.95 99.96 99.73 K intron_retention Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8107881_8109296 chr2L_8107880_8107881;chr2L_8109296_8109297 chr2L_8107748_8107880;chr2L_8109297_8109436 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.75 100.00 100.00 100.00 99.75 99.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.68 99.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.84 99.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.77 99.84 K intron_retention CG18317,RI_chr2L_1718492_1723881 chr2L - chr2L_1718359_1718420 chr2L_1718358_1718359;chr2L_1718420_1718421 chr2L_1718227_1718358;chr2L_1718421_1718491 0.00 0.00 0.00 0.00 0.00 0.00 3.51 0.00 2.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 4.12 0.00 8.33 0.00 7.07 6.06 9.09 0.00 0.00 0.00 0.00 0.00 0.00 4.17 2.14 0.00 2.44 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 1.32 1.56 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG2846 chr3R - chr3R_3738587_3738650 chr3R_3738586_3738587;chr3R_3738650_3738651 chr3R_3737883_3738586;chr3R_3738651_3738865 2.21 2.04 0.00 2.56 0.00 0.00 3.77 0.00 7.69 0.00 0.00 7.27 0.00 NA 0.00 8.33 0.00 0.00 3.85 8.96 0.00 5.26 3.92 3.92 0.00 3.45 4.17 0.00 0.00 0.00 6.25 0.00 6.45 0.00 0.00 0.00 0.00 2.38 9.30 1.82 0.00 3.77 6.67 9.76 6.38 4.76 4.65 6.25 7.69 0.00 6.67 0.00 0.00 0.00 3.57 2.63 0.00 10.53 K alternative_acceptor msn,I_chr3L_2558033_2560115,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2558393_2560115;chr3L_2558036_2560115 chr3L_2558390_2560115 chr3L_2560116_2560215;chr3L_2557936_2558035 76.39 78.05 72.48 81.16 76.43 71.39 57.34 77.87 81.91 71.71 79.60 77.42 86.81 78.42 74.35 77.84 82.99 82.03 84.19 74.62 80.50 83.76 76.01 74.34 74.88 78.49 75.00 67.49 85.84 76.89 78.13 76.39 76.17 77.39 75.56 72.90 84.92 68.98 77.81 78.14 69.00 76.03 75.97 82.05 72.25 74.95 70.08 81.36 78.48 72.90 72.13 72.05 72.39 71.85 77.22 72.76 68.86 76.60 K alternative_donor e(y)3,I_chrX_19530503_19530884,I_chrX_19530503_19531405 chrX - chrX_19530503_19531650;chrX_19530503_19531405;chrX_19530503_19532222 chrX_19530503_19530884 chrX_19530403_19530502;chrX_19532223_19532322 6.41 10.34 5.36 3.85 7.84 3.45 6.41 5.26 7.01 4.69 5.26 3.15 5.66 3.57 4.84 3.66 8.16 5.88 4.76 3.88 4.88 6.67 4.50 5.19 6.78 6.00 6.67 12.50 3.57 7.35 6.78 3.57 8.57 9.28 4.62 6.33 6.84 2.47 6.96 7.84 10.53 5.38 8.70 6.58 14.29 12.77 7.50 7.34 6.19 4.55 7.23 7.02 5.00 8.00 13.43 9.09 3.12 11.54 K intron_retention CG5284,I_chr3L_16086347_16086804 chr3L + chr3L_16084959_16085631 chr3L_16084958_16084959;chr3L_16085631_16085632 chr3L_16084616_16084958;chr3L_16085632_16085798 0.00 0.72 0.00 1.84 1.08 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.28 0.00 2.67 1.32 0.00 0.64 0.00 0.00 0.00 3.74 0.00 0.00 1.06 0.69 0.95 0.00 0.50 0.00 0.00 0.68 0.00 0.64 0.36 0.00 0.00 3.70 1.29 0.00 0.00 0.00 0.79 0.00 0.00 1.32 0.00 0.00 0.00 0.00 2.17 K alternative_acceptor CG4449,RI_chr3R_19076263_19076888 chr3R - chr3R_19076260_19076321 chr3R_19076263_19076321 chr3R_19076322_19076824;chr3R_19076163_19076259 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG33097,I_chr3R_2191538_2191675,I_chr3R_2199103_2199426 chr3R - chr3R_2190877_2191675 chr3R_2191538_2191675 chr3R_2191676_2191775;chr3R_2190726_2190876 0.00 0.00 0.00 0.00 1.69 0.00 0.00 1.20 0.00 2.78 0.00 0.87 1.92 0.00 0.00 4.29 0.00 3.77 1.96 4.65 0.00 1.59 0.00 0.00 0.00 0.00 2.75 9.68 2.17 0.00 0.00 0.00 1.03 0.00 0.00 0.00 3.70 0.00 0.00 2.04 0.00 0.98 0.00 1.72 0.00 1.04 0.00 1.55 0.00 2.25 0.85 0.00 0.00 1.15 0.00 0.00 1.92 0.00 K alternative_acceptor mbc,I_chr3R_19615584_19615649,I_chr3R_19625220_19625288 chr3R + chr3R_19626118_19626200 chr3R_19626118_19626179 chr3R_19625973_19626117;chr3R_19626201_19626586 100.00 100.00 100.00 98.63 100.00 100.00 97.78 100.00 98.67 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.59 100.00 97.14 100.00 98.55 100.00 97.06 100.00 95.83 96.30 100.00 96.88 100.00 100.00 100.00 97.50 97.44 98.46 100.00 100.00 98.08 96.30 98.72 100.00 100.00 100.00 100.00 98.00 96.55 98.53 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG10664 chr2L + chr2L_19959692_19959750 chr2L_19959691_19959692;chr2L_19959750_19959751 chr2L_19959267_19959691;chr2L_19959751_19960065 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.06 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.11 K intron_retention I_chr2R_4783150_4783708,Ggamma1,noncoding_5300 chr2R + chr2R_4789783_4789832 chr2R_4789782_4789783;chr2R_4789832_4789833 chr2R_4789746_4789782;chr2R_4789833_4790635 100.00 100.00 99.34 100.00 100.00 100.00 100.00 99.64 99.64 100.00 100.00 99.72 100.00 100.00 99.44 100.00 98.97 100.00 100.00 99.66 100.00 98.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.94 100.00 99.05 99.19 100.00 100.00 100.00 100.00 99.60 100.00 100.00 98.41 100.00 98.91 99.39 100.00 98.96 100.00 K alternative_acceptor R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8088371_8089393 chr2L_8088371_8089184 chr2L_8088362_8088370;chr2L_8089394_8089493 100.00 100.00 100.00 100.00 NA 83.33 97.22 96.55 95.12 87.50 100.00 95.65 94.74 100.00 100.00 97.83 92.86 100.00 93.33 94.12 NA 100.00 100.00 90.91 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 83.33 100.00 100.00 100.00 91.67 90.00 NA NA 100.00 100.00 100.00 100.00 K intron_retention Myd88 chr2R - chr2R_5192908_5192971 chr2R_5192907_5192908;chr2R_5192971_5192972 chr2R_5192739_5192907;chr2R_5192972_5193261 0.00 1.12 0.00 2.53 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 1.26 1.57 0.00 0.00 0.00 3.90 8.70 0.00 0.00 0.00 0.00 0.00 1.68 1.01 0.00 0.00 0.00 0.00 1.90 0.00 1.23 0.00 0.00 0.00 1.05 0.00 0.00 0.69 0.00 2.22 0.00 0.00 0.00 0.00 0.91 0.00 0.00 K alternative_acceptor Dab chr3L + chr3L_16710941_16711346 chr3L_16710941_16711121 chr3L_16710889_16710940;chr3L_16711347_16714116 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA 100.00 88.89 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 NA 83.33 100.00 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA K alternative_acceptor CG6230,I_chr2L_11117087_11117165 chr2L - chr2L_11117087_11117165 chr2L_11117107_11117165 chr2L_11117166_11117265;chr2L_11116987_11117086 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 98.90 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 100.00 100.00 98.70 98.39 100.00 99.33 99.00 100.00 98.21 100.00 100.00 100.00 100.00 98.41 100.00 100.00 98.39 98.46 100.00 100.00 100.00 100.00 98.33 98.53 100.00 100.00 100.00 100.00 98.39 100.00 99.10 K intron_retention CG7945,RI_chr3L_15515681_15516932,RI_chr3L_15516824_15516932 chr3L - chr3L_15515681_15516067 chr3L_15515680_15515681;chr3L_15516067_15516068 chr3L_15515660_15515680;chr3L_15516068_15516564 12.25 14.29 0.00 7.41 0.00 19.05 19.35 15.38 4.35 NA 13.04 5.71 23.08 11.11 0.00 0.00 13.33 0.00 10.53 11.32 4.55 28.00 11.11 7.41 14.29 23.53 22.22 22.22 17.65 18.75 6.25 12.50 21.05 9.76 NA 14.29 6.25 NA 9.52 15.56 14.29 6.25 12.50 4.35 0.00 14.29 NA 17.65 13.51 15.00 9.52 NA 5.56 21.05 0.00 12.00 3.57 22.73 K cassette Zasp52,I_chr2R_11652341_11652627,RI_chr2R_11652953_11660545,RI_chr2R_11654219_11660545,I_chr2R_11690993_11701987 chr2R - chr2R_11652341_11661320 chr2R_11652341_11652627;chr2R_11657057_11661320 chr2R_11652628_11657056 chr2R_11652241_11652340;chr2R_11661321_11661384 9.17 6.00 6.10 6.93 10.00 9.52 17.58 8.05 9.87 16.95 8.93 12.12 12.50 8.47 9.64 8.45 11.54 7.46 10.61 9.86 6.56 17.24 9.15 8.11 7.34 8.82 9.76 17.58 7.41 12.70 7.69 8.82 29.21 9.17 7.63 15.84 11.11 5.88 7.45 8.79 10.81 9.27 9.26 9.82 12.36 8.62 4.58 15.00 10.45 8.89 9.22 7.25 7.69 3.45 9.76 5.22 7.63 14.49 K intron_retention Rab-RP3,I_chr3L_8290720_8290792 chr3L + chr3L_8290720_8290914 chr3L_8290719_8290720;chr3L_8290914_8290915 chr3L_8290635_8290719;chr3L_8290915_8291171 0.00 0.00 0.00 5.41 0.00 10.00 4.88 0.00 0.00 0.00 10.53 0.00 NA 0.00 9.52 0.00 0.00 0.00 0.00 2.27 0.00 9.09 0.00 0.00 10.53 0.00 0.00 NA 0.00 0.00 5.56 0.00 5.26 0.00 0.00 18.75 0.00 0.00 3.23 0.00 9.52 0.00 0.00 0.00 0.00 0.00 10.53 0.00 0.00 3.85 0.00 0.00 NA NA 0.00 0.00 NA 0.00 K alternative_donor X11L,I_chrX_17497609_17497728,RE_chrX_17497873_17498103 chrX + chrX_17497505_17497728 chrX_17497609_17497728 chrX_17497729_17497739;chrX_17497189_17497504 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 1.92 0.00 0.00 2.27 1.56 0.00 5.71 1.30 0.00 0.00 0.00 3.77 0.00 11.76 0.00 2.22 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 3.45 0.00 7.14 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 NA K cassette capu,I_chr2L_3884519_3902594,I_chr2L_3887896_3888648 chr2L - chr2L_3879068_3893261 chr2L_3879068_3884035;chr2L_3884519_3893261 chr2L_3884036_3884518 chr2L_3878895_3879067;chr2L_3893262_3893604 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 98.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor blp,EI_chr3R_11759655_11759701,Sap47 chr3R + chr3R_11759621_11759721 chr3R_11759655_11759721 chr3R_11759722_11759801;chr3R_11759616_11759620 100.00 91.67 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 96.77 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 93.75 100.00 100.00 100.00 NA 100.00 100.00 95.24 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 97.44 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 K intron_retention par-1,I_chr2R_15365210_15370456 chr2R + chr2R_15366371_15368655 chr2R_15366370_15366371;chr2R_15368655_15368656 chr2R_15366257_15366370;chr2R_15368656_15368976 1.15 0.00 0.00 7.25 0.00 0.00 5.13 2.60 2.67 0.00 16.00 2.70 0.00 0.00 0.00 0.00 2.86 0.00 1.92 1.85 6.06 5.66 2.17 4.76 0.00 0.00 0.00 3.85 0.00 3.70 0.00 0.00 0.00 1.19 1.43 2.94 5.26 2.78 4.44 0.00 0.00 1.15 6.25 0.00 0.00 0.00 0.00 0.00 3.19 1.54 0.00 4.26 0.00 1.92 3.03 1.96 0.00 0.00 K intron_retention Cct1,Cct2 chr3L + chr3L_1546307_1546598 chr3L_1546306_1546307;chr3L_1546598_1546599 chr3L_1546118_1546306;chr3L_1546599_1546676 16.67 16.67 16.00 23.08 27.27 9.09 30.00 21.05 19.15 12.50 11.11 20.63 0.00 17.39 24.39 20.00 9.09 12.90 15.62 14.08 8.33 41.67 12.50 12.50 22.22 4.76 25.93 50.00 16.67 10.00 20.59 13.04 16.00 12.50 26.67 16.67 7.69 16.67 10.64 21.43 22.22 19.15 13.64 22.22 10.81 4.65 23.08 19.44 17.65 10.53 21.74 16.67 NA 10.53 21.95 0.00 0.00 11.76 K jcn_only_AD RhoGAPp190,I_chrX_17544272_17544863,I_chrX_17546225_17546531 chrX - chrX_17544272_17546123;chrX_17544272_17546421 chrX_17544272_17546531 chrX_17544172_17544271;chrX_17546532_17546535 72.31 72.41 79.41 74.55 69.05 73.33 69.23 60.78 76.14 84.00 72.97 57.32 79.31 85.19 71.43 70.27 77.78 72.41 65.00 68.42 73.33 72.22 37.50 NA NA 62.16 NA NA 84.38 62.50 65.96 NA 80.85 77.05 46.15 NA NA NA NA 69.70 NA 76.81 67.74 74.19 NA NA NA 81.33 66.67 NA 29.17 NA NA NA 59.52 NA NA 90.48 K alternative_acceptor sol chrX + chrX_21225441_21225509 chrX_21225441_21225506 chrX_21225121_21225440;chrX_21225510_21227095 65.91 64.91 63.16 65.91 61.29 63.16 73.68 62.50 67.31 73.53 57.69 64.29 73.91 64.00 70.83 62.16 70.83 63.89 55.56 64.66 78.79 72.84 63.11 73.61 75.00 84.62 67.69 70.97 68.66 70.18 63.93 63.04 68.12 65.71 69.23 72.13 62.81 64.94 63.57 75.00 73.91 65.05 70.83 64.71 62.07 69.57 64.81 66.67 57.78 69.44 60.24 55.88 58.06 70.00 70.73 75.00 62.50 71.43 K cassette rgr,I_chr2R_4488735_4489955 chr2R + chr2R_4488735_4495816 chr2R_4488735_4495661;chr2R_4495761_4495816 chr2R_4495662_4495760 chr2R_4488635_4488734;chr2R_4495817_4496026 3.04 0.00 3.70 4.35 7.14 5.00 0.00 5.88 4.65 1.37 0.00 6.12 NA 5.26 4.76 5.56 5.88 0.00 6.67 0.00 3.85 11.28 1.09 5.63 0.00 11.11 2.82 1.98 1.89 3.37 5.56 3.28 3.82 8.70 1.64 0.00 2.40 4.44 1.77 2.29 2.50 2.13 11.76 2.27 2.04 2.11 1.64 1.90 2.86 1.16 5.63 0.00 2.38 2.17 3.85 3.92 3.23 3.39 K intron_retention CG40228,noncoding_14406,RI_chr3LHet_2190419_2190470 chr3LHet - chr3LHet_2190419_2190548 chr3LHet_2190418_2190419;chr3LHet_2190548_2190549 chr3LHet_2190319_2190418;chr3LHet_2190549_2190570 9.52 11.11 5.77 12.84 9.52 11.32 20.48 14.07 18.42 NA 9.09 10.48 13.24 13.04 2.17 8.82 14.81 4.44 6.25 11.70 3.33 NA 13.16 14.29 14.29 3.12 8.16 5.56 6.06 13.04 4.71 8.33 4.76 12.70 6.67 4.76 NA 4.17 0.00 10.77 17.86 7.23 8.96 17.14 3.70 5.56 15.38 6.56 11.11 17.39 12.31 18.52 6.82 5.88 9.52 10.71 8.96 14.77 K alternative_donor sta chrX - chrX_1376949_1377290;chrX_1376949_1377164 chrX_1376949_1377143 chrX_1376851_1376948;chrX_1377291_1377379 0.24 0.44 0.26 0.13 0.12 0.19 0.28 0.13 0.21 0.38 0.05 0.22 0.05 0.28 0.22 0.21 0.13 0.22 0.12 0.15 0.10 0.77 1.46 0.81 0.32 0.12 1.36 0.92 0.50 0.40 0.43 0.22 0.14 0.11 0.97 0.61 0.43 1.00 0.49 0.07 0.19 0.13 0.22 0.17 0.12 0.36 0.84 0.20 0.24 0.69 1.85 0.47 0.26 2.22 0.19 0.72 0.74 0.17 K intron_retention CG42540,CE_chr3L_4563905_4577916,C_chr3L_4563905_4578759 chr3L + chr3L_4563897_4578759 chr3L_4563896_4563897;chr3L_4578759_4578760 chr3L_4563877_4563896;chr3L_4578760_4578850 21.43 NA NA 21.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Atet,chr2L_4334987_4335394.0,chr2L_4335788_4336447.0 chr2L + chr2L_4334105_4336449;chr2L_4334111_4336449;chr2L_4334031_4336449 chr2L_4334440_4336449 chr2L_4336450_4336957;chr2L_4333936_4334030 58.47 NA NA 66.67 NA NA 75.00 70.97 69.70 NA NA 58.62 70.00 NA NA 47.83 NA NA 60.87 80.00 NA 25.42 54.55 NA NA NA NA NA 53.85 62.07 NA NA 44.44 53.33 58.33 53.85 NA NA NA 62.50 50.00 38.10 NA 67.50 NA 52.38 NA 54.00 52.00 NA 65.00 NA NA NA NA NA NA 69.77 K intron_retention Irc,I_chr3R_12830023_12830084,CG8907 chr3R + chr3R_12832635_12832804 chr3R_12832634_12832635;chr3R_12832804_12832805 chr3R_12832472_12832634;chr3R_12832805_12832930 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ird5,CG10185 chr3R - chr3R_11873902_11873963 chr3R_11873901_11873902;chr3R_11873963_11873964 chr3R_11873080_11873901;chr3R_11873964_11874533 93.33 83.33 95.65 97.06 84.21 88.89 91.18 91.89 94.23 88.89 94.74 96.97 95.24 95.83 96.30 100.00 88.89 95.65 95.00 97.37 88.46 100.00 93.10 95.24 92.86 85.71 94.74 82.35 100.00 92.86 84.85 93.33 75.86 97.56 94.74 77.78 76.19 88.89 76.47 83.72 93.33 93.88 93.75 96.00 94.44 96.15 84.62 94.29 90.91 95.45 89.29 84.62 92.31 100.00 96.55 90.48 78.95 89.29 K intron_retention Klc,I_chr3L_12741783_12742943,I_chr3L_12741838_12743062 chr3L - chr3L_12739931_12739997 chr3L_12739930_12739931;chr3L_12739997_12739998 chr3L_12739716_12739930;chr3L_12739998_12740303 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG10353,I_chrX_11775936_11778830,RI_chrX_11780885_11780988 chrX - chrX_11779138_11780988;chrX_11780885_11780988 chrX_11779315_11780988 chrX_11780989_11781085;chrX_11778831_11779137 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 50.00 NA 0.00 0.00 8.33 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 33.33 K cassette RpL7A,I_chrX_6426455_6427156,I_chrX_6426579_6427002 chrX - chrX_6426455_6427156 chrX_6426455_6426522;chrX_6426579_6427156 chrX_6426523_6426578 chrX_6426355_6426454;chrX_6427157_6427194 99.92 100.00 99.95 99.97 99.93 99.82 99.93 99.97 99.88 100.00 99.94 100.00 99.95 99.94 99.92 99.97 99.94 99.89 100.00 99.84 99.78 99.79 99.89 99.94 99.89 99.79 99.92 99.88 98.53 100.00 98.79 99.74 100.00 99.94 99.91 99.92 99.72 99.90 99.92 99.84 99.87 99.85 99.94 100.00 99.92 100.00 100.00 99.89 99.87 99.86 99.83 99.91 99.83 100.00 99.81 99.94 99.96 99.94 K intron_retention oho23B,I_chr2L_2856176_2856244,I_chr2L_2856573_2856630,RI_chr2L_2856673_2856772 chr2L + chr2L_2856176_2856246 chr2L_2856175_2856176;chr2L_2856246_2856247 chr2L_2856076_2856175;chr2L_2856247_2856287 0.00 0.00 0.00 0.02 0.00 0.00 0.04 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.03 0.00 0.00 0.08 0.07 0.00 0.00 0.42 0.92 0.10 0.00 0.00 0.00 0.00 0.00 0.22 0.23 0.06 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.08 0.04 0.02 0.09 0.05 0.00 0.24 0.00 0.00 0.03 0.06 0.03 K intron_retention M(2)21AB,I_chr2L_107839_110405,I_chr2L_107957_108587,I_chr2L_110878_111037,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_108347_108587 chr2L_108346_108347;chr2L_108587_108588 chr2L_108285_108346;chr2L_108588_108687 5.11 0.00 0.00 12.12 NA NA 0.00 10.87 10.53 7.69 8.00 0.00 NA 0.00 NA 19.05 NA NA 0.00 6.90 0.00 11.43 6.67 5.71 3.03 0.00 7.41 10.53 18.52 7.14 10.53 0.00 6.67 10.71 4.55 4.65 3.03 0.00 0.00 9.26 7.14 0.00 5.56 10.71 NA 0.00 0.00 5.56 13.04 4.17 4.17 11.54 0.00 0.00 14.29 0.00 4.35 0.00 K intron_retention CG7852,Cct1,Cct2 chr3L + chr3L_1543144_1543209 chr3L_1543143_1543144;chr3L_1543209_1543210 chr3L_1543025_1543143;chr3L_1543210_1543592 13.56 NA NA 25.00 NA NA NA 11.11 17.65 NA NA 14.29 NA NA NA NA NA NA NA 13.79 NA 31.82 17.07 9.09 14.29 NA 23.53 22.22 29.41 0.00 6.67 NA 14.29 12.50 NA 17.39 7.41 0.00 13.33 18.52 17.65 15.38 NA NA 5.56 0.00 NA 0.00 12.50 25.00 9.09 NA NA 0.00 11.11 NA 11.11 NA K alternative_acceptor CG18854,I_chr2L_9790307_9790615,I_chr2L_9790310_9790453,I_chr2L_9790310_9790556 chr2L - chr2L_9790307_9790615 chr2L_9790310_9790615 chr2L_9790616_9790656;chr2L_9790210_9790306 99.23 99.15 100.00 98.71 100.00 100.00 99.52 99.50 99.10 100.00 99.07 99.15 98.72 100.00 99.24 99.33 99.31 100.00 99.25 99.68 99.12 98.78 99.21 99.48 99.30 100.00 97.69 98.90 99.15 98.91 99.54 100.00 97.67 100.00 98.68 99.07 98.88 100.00 99.44 97.66 100.00 99.23 100.00 100.00 96.43 99.16 99.12 99.22 98.42 99.07 98.75 100.00 100.00 100.00 100.00 99.13 98.70 98.51 K jcn_only_AD RpL32,I_chr3R_25871509_25871807 chr3R - chr3R_25871509_25871851;chr3R_25871509_25871611;chr3R_25871509_25871583;chr3R_25871509_25871855 chr3R_25871509_25871771 chr3R_25871409_25871508;chr3R_25871856_25871862 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 K intron_retention Kdm4B,seq chr2R - chr2R_9075414_9085181 chr2R_9075413_9075414;chr2R_9085181_9085182 chr2R_9075201_9075413;chr2R_9085182_9085481 20.34 NA 20.00 52.94 NA 14.29 29.41 33.33 21.21 NA NA 22.58 15.38 14.29 25.00 30.77 14.29 30.77 20.00 28.57 14.29 NA NA NA NA 38.46 NA NA NA NA 33.33 NA 13.33 30.77 NA NA 12.50 NA 12.50 0.00 NA 20.69 14.29 NA NA NA NA 9.09 29.03 NA NA NA NA NA 16.67 NA NA NA K intron_retention CG6905 chr3L - chr3L_358396_358456 chr3L_358395_358396;chr3L_358456_358457 chr3L_357981_358395;chr3L_358457_358486 96.92 100.00 97.14 100.00 96.88 96.77 93.33 94.23 93.75 96.88 91.89 93.85 92.31 100.00 97.50 97.87 96.43 94.29 96.55 98.78 97.14 98.61 100.00 91.67 100.00 97.14 96.30 95.65 98.28 97.96 92.59 96.08 97.18 94.92 100.00 97.62 96.92 97.78 92.31 97.40 94.64 94.94 96.77 98.25 98.57 93.65 96.97 97.26 97.37 98.88 96.61 96.55 95.45 97.83 97.22 96.30 93.44 97.65 K cassette CG6145,noncoding_6597 chr2R - chr2R_9426855_9432812;chr2R_9426855_9434019 chr2R_9426855_9429665;chr2R_9430069_9432812,chr2R_9430069_9434019 chr2R_9429666_9430068 chr2R_9426755_9426854;chr2R_9434020_9434119 15.38 9.68 19.05 14.29 13.04 22.22 21.43 15.00 17.86 8.70 6.25 16.67 4.76 21.05 18.18 16.28 13.64 4.55 18.75 18.46 16.67 7.94 12.50 11.11 22.73 11.54 15.52 10.26 10.81 11.43 14.81 15.79 8.33 15.62 24.00 19.35 9.59 16.67 13.21 14.29 20.00 16.67 25.00 8.89 30.77 16.67 15.62 17.86 18.00 17.65 8.93 15.00 15.38 15.00 13.33 9.09 14.71 15.38 K jcn_only_AA Asph,C_chr2R_12000224_12000293,I_chr2R_12002559_12002858,I_chr2R_12003264_12003325 chr2R + chr2R_11999647_11999706 chr2R_11999647_11999700 chr2R_11999488_11999646;chr2R_11999707_12000035 95.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.00 NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Csk,I_chr3R_7463337_7463512,I_chr3R_7468928_7472509 chr3R - chr3R_7461353_7461422 chr3R_7461352_7461353;chr3R_7461422_7461423 chr3R_7461191_7461352;chr3R_7461423_7461691 0.00 0.00 0.00 0.55 0.00 0.45 0.00 0.66 0.00 0.00 0.00 0.53 0.00 0.52 0.75 0.82 0.69 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.47 0.00 3.41 2.54 0.00 0.00 0.00 0.00 0.66 0.59 0.52 0.00 0.00 0.00 0.67 0.00 1.50 0.23 0.56 0.00 0.36 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 K jcn_only_AA 14-3-3epsilon,I_chr3R_14068632_14073155,RI_chr3R_14074062_14074138,I_chr3R_14074016_14074138 chr3R + chr3R_14073874_14073954;chr3R_14073874_14073939;chr3R_14073874_14073942 chr3R_14073874_14073936 chr3R_14073693_14073873;chr3R_14073955_14074015 45.52 43.12 47.79 41.99 44.01 43.03 42.92 45.69 42.43 46.51 41.41 45.52 45.20 47.28 45.93 46.50 44.91 46.29 45.22 46.54 43.45 49.02 43.39 44.68 49.08 50.08 36.25 34.77 45.70 46.52 43.53 47.20 47.62 46.31 47.91 57.58 41.65 44.47 45.10 51.57 51.97 45.19 44.21 46.51 43.72 50.03 47.65 49.09 45.87 44.07 44.11 48.89 47.18 46.42 44.61 44.65 42.96 45.33 K intron_retention CG8468 chr2R + chr2R_10116801_10116917 chr2R_10116800_10116801;chr2R_10116917_10116918 chr2R_10114916_10116800;chr2R_10116918_10118131 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.53 0.00 0.00 1.30 1.14 0.00 0.00 0.00 0.00 0.35 0.43 0.00 0.00 0.20 0.29 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14023 chr2L - chr2L_5324910_5325951 chr2L_5324909_5324910;chr2L_5325951_5325952 chr2L_5324726_5324909;chr2L_5325952_5326648 4.01 0.00 10.00 10.34 12.50 12.50 4.17 6.25 8.16 NA NA 13.79 0.00 9.09 4.76 0.00 0.00 NA 0.00 2.63 NA NA 0.00 0.00 0.00 0.00 6.67 15.79 NA 0.00 NA NA 7.69 5.41 0.00 NA 0.00 NA 0.00 4.17 NA 5.00 NA NA NA NA NA 0.00 4.55 NA 3.85 NA NA NA 0.00 NA NA NA K alternative_donor Aats-ile chr3L + chr3L_22281816_22281894 chr3L_22281841_22281894 chr3L_22281895_22282039;chr3L_22281762_22281815 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 95.45 95.83 94.12 94.74 100.00 97.87 100.00 100.00 100.00 100.00 94.12 100.00 100.00 96.77 100.00 100.00 100.00 NA 100.00 96.30 100.00 100.00 96.00 100.00 93.33 100.00 NA 96.88 100.00 100.00 100.00 NA 100.00 NA 97.44 100.00 100.00 100.00 100.00 100.00 96.15 100.00 NA NA K intron_retention Sec22,I_chrX_700593_700676,RI_chrX_700599_700665 chrX + chrX_700776_701001 chrX_700775_700776;chrX_701001_701002 chrX_700677_700775;chrX_701002_701303 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 4.35 0.00 0.00 3.45 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Hsf,I_chr2R_14018415_14018474,RI_chr2R_14021578_14021911,RI_chr2R_14021614_14021911 chr2R - chr2R_14021601_14021911 chr2R_14021614_14021911 chr2R_14021912_14022011;chr2R_14021514_14021600 4.55 10.00 3.85 4.26 NA 0.00 5.56 0.00 2.78 NA NA 2.27 NA NA NA 0.00 9.52 NA 8.57 5.00 NA NA 0.00 10.00 NA 0.00 4.76 NA NA 5.00 NA NA NA 4.08 NA NA NA NA NA NA NA 13.33 NA 0.00 NA NA NA NA 7.69 4.35 NA 8.33 NA NA 12.50 NA NA NA K jcn_only_AD CG15347,I_chrX_8353371_8353552,I_chrX_8353371_8354203,I_chrX_8353497_8353552 chrX - chrX_8353371_8354798 chrX_8353371_8353552 chrX_8353271_8353370;chrX_8354799_8354949 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 1.46 0.00 0.00 0.00 0.40 0.00 0.00 0.75 0.00 0.21 0.52 0.15 0.21 0.34 0.00 0.00 0.00 0.26 0.00 0.84 0.16 1.14 0.00 0.00 0.00 0.68 0.00 0.00 0.36 0.00 0.51 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.58 0.00 0.41 0.00 0.00 0.00 0.49 0.00 0.00 K alternative_donor I_chr3R_23069667_23070365,CG5987 chr3R - chr3R_23074805_23074990 chr3R_23074805_23074865 chr3R_23074264_23074804;chr3R_23074991_23075500 91.67 75.00 90.00 88.57 100.00 100.00 100.00 100.00 82.35 NA 100.00 100.00 NA 100.00 100.00 95.24 100.00 NA NA 100.00 100.00 100.00 100.00 90.00 NA NA 87.50 100.00 77.78 88.89 100.00 91.67 100.00 88.89 87.50 88.89 91.67 83.33 92.86 88.89 90.00 87.50 83.33 88.89 90.91 90.91 90.91 91.67 100.00 100.00 88.89 NA 88.89 83.33 100.00 91.67 94.12 93.33 K alternative_acceptor Cp110,I_chrX_21890195_21895316,I_chrX_21900456_21904601 chrX + chrX_21886363_21887237 chrX_21886363_21887072 chrX_21884923_21886362;chrX_21887238_21887471 36.00 33.33 33.33 44.44 40.00 17.65 27.27 46.15 36.00 NA 66.67 41.67 20.00 33.33 42.86 35.00 26.67 26.67 23.08 32.00 50.00 60.00 42.86 31.03 42.86 50.00 30.77 NA 60.00 35.71 46.67 53.33 35.48 43.75 21.43 40.00 38.46 35.71 43.75 50.00 45.00 30.00 25.00 60.00 40.91 33.33 40.00 44.00 19.35 25.00 41.18 41.67 18.18 50.00 29.41 29.41 25.00 31.03 K intron_retention Dscam,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3254472_3255892 chr2R_3254471_3254472;chr2R_3255892_3255893 chr2R_3254439_3254471;chr2R_3255893_3255920 62.59 NA NA 61.54 NA NA 80.00 50.00 38.89 NA NA 63.64 NA NA NA NA NA NA 69.23 87.50 NA 45.45 NA NA NA NA 70.00 NA NA 63.64 60.00 NA 30.77 66.67 NA NA 40.00 NA NA NA NA 40.00 NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA K intron_retention CG12765 chr2R + chr2R_9118666_9118731 chr2R_9118665_9118666;chr2R_9118731_9118732 chr2R_9118485_9118665;chr2R_9118732_9119173 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 92.31 100.00 100.00 95.00 92.31 100.00 100.00 NA 100.00 100.00 87.50 K jcn_only_AD PhKgamma,I_chrX_11589428_11589856,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11589418_11589856;chrX_11589428_11589856;chrX_11589313_11589856 chrX_11589297_11589856 chrX_11589857_11589956;chrX_11589195_11589296 0.00 4.55 0.00 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA NA 4.00 4.76 NA NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 2.56 NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 N intron_retention CG32594 chrX + chrX_14927496_14927638 chrX_14927495_14927496;chrX_14927638_14927639 chrX_14927639_14928125 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA 74.07 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA NA NA 100.00 K multi_cassette ssp4,I_chr2R_13409412_13410357,RI_chr2R_13409412_13411004,I_chr2R_13409412_13411328,I_chr2R_13409412_13411588,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13409406_13411588 chr2R_13409406_13410357;chr2R_13410466_13411004;chr2R_13411077_13411588 chr2R_13410358_13410465;chr2R_13411005_13411076 chr2R_13409337_13409405;chr2R_13411589_13411688 5.56 NA NA NA 7.14 NA NA 9.09 4.35 NA NA 3.70 NA NA NA NA NA 14.29 NA 9.52 NA 9.52 5.88 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA 0.00 0.00 NA 10.00 NA 6.67 0.00 5.56 NA NA 5.56 NA 6.67 NA NA NA 7.69 0.00 NA NA N jcn_only_AD CG10353,I_chrX_11775936_11778830,I_chrX_11778617_11778830,RI_chrX_11780885_11780988 chrX - chrX_11775936_11777234;chrX_11775936_11776058;chrX_11775936_11777220;chrX_11775936_11776142 chrX_11775936_11777133 chrX_11775836_11775935;chrX_11777235_11777654 42.17 49.12 38.81 41.98 43.48 48.15 64.56 68.00 54.69 40.00 68.18 55.46 66.67 61.29 37.21 58.43 52.17 64.71 54.05 43.12 50.91 31.11 42.17 40.91 37.04 38.18 55.77 31.82 15.49 38.10 31.19 27.27 35.71 51.79 33.33 36.36 47.12 50.00 45.71 40.50 33.33 37.29 47.17 34.33 15.62 40.00 50.00 33.97 43.85 41.67 50.00 50.00 43.14 37.50 27.42 38.10 53.85 36.73 K jcn_only_AA CG7692 chr3L + chr3L_17348672_17348766 chr3L_17348672_17348763 chr3L_17347868_17348671;chr3L_17348767_17349380 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 95.00 NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA 91.67 NA NA NA NA NA 100.00 NA NA 95.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention NK7_1,RI_chr3R_10156804_10158026,CG31320,snoRNA:Me18S-G1189 chr3R - chr3R_10170907_10192914 chr3R_10170906_10170907;chr3R_10192914_10192915 chr3R_10169947_10170906;chr3R_10192915_10193206 0.00 NA 0.00 0.00 NA NA NA 0.00 9.52 0.00 NA 5.88 NA NA 0.00 NA NA NA NA 0.00 NA 0.00 8.00 0.00 NA NA 0.00 NA NA NA NA NA 0.00 10.53 0.00 NA 0.00 4.76 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 3.85 0.00 13.64 NA NA NA NA 0.00 NA NA K intron_retention RI_chrX_7172561_7252693,CG1677 chrX - chrX_7175780_7175855 chrX_7175779_7175780;chrX_7175855_7175856 chrX_7175138_7175779;chrX_7175856_7175993 0.00 NA NA NA NA NA NA 11.76 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 0.00 NA K intron_retention MTF-1,I_chr3L_9427147_9427217,RI_chr3L_9427314_9427495 chr3L + chr3L_9423937_9427495 chr3L_9423936_9423937;chr3L_9427495_9427496 chr3L_9423442_9423936;chr3L_9427496_9427570 29.92 50.00 25.00 35.71 NA NA 29.41 16.67 19.35 NA NA 32.00 46.15 NA 14.29 26.32 NA 30.77 NA 26.92 NA 52.94 30.43 28.57 NA NA 31.58 52.00 40.00 11.11 NA NA 52.94 15.38 41.67 35.29 31.58 NA 21.05 36.67 NA 21.43 NA 25.00 30.77 30.77 NA NA 21.05 50.00 23.81 23.08 23.08 NA NA 20.00 NA NA K jcn_only_AD Slip1,RI_chr4_684967_689045,I_chr4_685717_686576,RI_chr4_685717_689045,RI_chr4_687548_689045 chr4 + chr4_687548_689045 chr4_687559_689045 chr4_689046_689145;chr4_687448_687547 100.00 100.00 100.00 96.77 NA NA 100.00 98.39 96.63 NA 100.00 98.31 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 95.65 97.73 97.87 100.00 96.77 100.00 NA NA 96.97 94.59 NA 96.43 98.77 NA NA 100.00 97.37 100.00 100.00 NA 97.18 100.00 100.00 NA 95.12 95.00 NA 97.10 100.00 100.00 100.00 100.00 100.00 94.83 100.00 94.44 NA K intron_retention Rab-RP4,RI_chrX_5565547_5565601 chrX - chrX_5565547_5565635 chrX_5565546_5565547;chrX_5565635_5565636 chrX_5565447_5565546;chrX_5565636_5565701 0.98 0.00 0.93 2.96 1.49 1.09 1.40 0.67 2.23 0.00 0.00 1.12 2.15 1.06 0.91 0.00 0.00 0.00 0.98 1.73 0.00 2.89 0.00 2.08 1.04 0.95 2.08 0.00 1.92 1.46 0.00 1.07 2.14 0.00 1.00 1.59 2.91 0.00 2.41 0.00 3.37 1.16 1.43 1.82 1.20 0.97 0.00 0.80 1.69 0.00 0.71 0.00 0.00 0.00 0.95 2.22 0.00 0.37 K jcn_only_AA sol chrX + chrX_21225441_21225509 chrX_21225441_21225506 chrX_21225121_21225440;chrX_21225510_21227095 78.64 76.67 74.36 78.12 72.13 76.54 84.62 75.00 78.64 83.78 71.15 77.35 85.45 76.92 81.55 74.67 82.35 76.00 72.88 77.11 85.51 83.33 76.26 83.54 84.42 90.16 79.14 81.25 80.54 82.96 75.78 77.36 80.86 78.57 80.18 82.35 74.90 79.10 75.75 84.87 85.71 77.97 81.63 77.55 76.34 81.73 77.39 79.19 71.96 82.56 73.21 72.00 73.53 81.91 83.33 86.11 76.92 82.73 N cassette Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21128063_21131230;chr2L_21128063_21132033 chr2L_21128063_21128739;chr2L_21129083_21132033,chr2L_21129083_21131230 chr2L_21128740_21129082 chr2L_21127850_21128062;chr2L_21132034_21132685 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 98.21 97.73 100.00 100.00 100.00 98.98 100.00 91.51 100.00 98.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 97.73 98.78 100.00 100.00 100.00 96.34 100.00 100.00 100.00 98.61 98.00 100.00 98.11 100.00 98.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG33298 chr2L + chr2L_9496256_9503595 chr2L_9496256_9503592 chr2L_9496148_9496255;chr2L_9503596_9504813 86.67 88.89 90.91 83.33 87.50 NA 73.91 86.21 83.33 NA 100.00 89.47 73.33 92.86 84.62 90.00 93.33 90.00 78.95 68.75 85.71 NA NA NA NA NA NA NA NA NA 76.47 NA NA 76.67 100.00 NA NA NA NA NA NA 95.45 86.67 NA NA NA NA NA 85.19 NA NA NA NA NA 92.86 NA NA NA K jcn_only_AA CG15814,I_chrX_17743744_17743940 chrX - chrX_17743744_17743940 chrX_17743844_17743940 chrX_17743941_17744040;chrX_17743644_17743743 99.42 99.43 100.00 99.48 99.19 100.00 99.42 99.49 99.73 98.68 99.17 99.10 99.18 99.17 98.47 99.39 98.32 100.00 100.00 99.71 98.18 98.18 100.00 99.61 100.00 94.90 99.65 98.75 91.51 98.78 100.00 98.73 99.26 98.96 97.37 100.00 99.79 99.15 98.15 100.00 99.60 99.66 100.00 99.62 98.88 99.66 98.97 99.00 99.57 98.73 99.59 99.32 100.00 98.08 99.35 100.00 100.00 99.52 K jcn_only_AA slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,RI_chr2R_20289332_20289739,I_chr2R_20289332_20289846,I_chr2R_20289332_20290093 chr2R - chr2R_20289295_20290083 chr2R_20289332_20290083 chr2R_20290084_20290204;chr2R_20289232_20289294 95.74 NA NA 95.83 NA 88.46 72.55 100.00 96.43 NA NA 98.00 96.30 100.00 84.62 96.67 100.00 95.24 100.00 95.56 95.65 92.00 95.74 92.31 NA 96.77 95.65 95.65 NA 97.14 95.24 NA 100.00 97.83 96.55 100.00 91.30 NA NA 93.33 NA 90.91 88.46 94.44 NA 93.33 95.00 100.00 96.23 NA 92.50 96.77 95.00 NA 100.00 NA NA 100.00 K intron_retention CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27044990 chr3R_27044770_27044771;chr3R_27044990_27044991 chr3R_27044671_27044770;chr3R_27044991_27045021 92.31 NA 87.50 NA NA NA 92.31 90.91 100.00 NA NA 90.91 87.50 100.00 NA 92.86 77.78 91.67 100.00 87.50 NA NA NA 100.00 NA 100.00 NA NA 94.12 NA 90.00 NA 92.86 91.67 NA NA 100.00 NA NA 100.00 81.82 100.00 NA NA NA 87.50 NA 90.91 84.62 NA NA NA NA NA 92.31 100.00 100.00 93.33 K intron_retention CG14619,I_chrX_21860097_21860199,RI_chrX_21860097_21868647,I_chrX_21865109_21865522,I_chrX_21869837_21869915 chrX + chrX_21860097_21868000 chrX_21860096_21860097;chrX_21868000_21868001 chrX_21859997_21860096;chrX_21868001_21868211 10.08 6.12 16.28 19.15 13.33 3.45 14.29 19.05 9.90 14.81 13.64 13.33 0.00 16.67 10.81 37.04 6.67 12.90 18.18 10.08 21.43 8.33 12.12 5.19 7.55 0.00 8.20 10.34 5.26 28.57 17.65 8.33 17.86 10.94 7.69 9.52 5.34 3.08 4.40 7.89 10.53 10.26 20.00 8.22 13.33 7.32 3.23 7.89 15.79 9.09 11.11 4.17 2.94 0.00 17.95 9.09 6.06 15.38 K intron_retention Eb1,RI_chr2R_2640290_2642206,I_chr2R_2640494_2642206,I_chr2R_2641187_2642206,RI_chr2R_2641944_2642025,I_chr2R_2641954_2642206,I_chr2R_2642491_2642549 chr2R + chr2R_2640494_2640577 chr2R_2640493_2640494;chr2R_2640577_2640578 chr2R_2640394_2640493;chr2R_2640578_2641008 85.71 NA NA 90.91 NA NA 72.22 100.00 80.00 NA NA 92.86 NA NA NA 100.00 NA NA 92.31 92.86 NA 95.45 100.00 70.00 87.50 NA 85.71 NA NA NA 75.00 NA 40.00 84.62 NA 73.33 NA NA 63.64 63.64 50.00 93.75 NA 80.00 NA 90.00 NA 76.92 100.00 NA 88.89 NA NA NA 80.00 NA NA NA K intron_retention Pros54 chr3L + chr3L_21530239_21530339 chr3L_21530238_21530239;chr3L_21530339_21530340 chr3L_21530106_21530238;chr3L_21530340_21530480 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.43 0.00 1.64 2.27 0.00 0.00 0.76 5.88 0.00 0.00 0.00 1.48 0.00 0.00 1.73 0.00 0.00 0.00 0.00 0.00 0.71 2.60 0.00 0.00 0.00 0.00 0.00 3.92 0.00 0.00 4.35 0.00 0.00 0.00 8.33 0.00 2.44 0.00 0.00 N jcn_only_AD CG17233,RI_chr3L_20232898_20232962 chr3L - chr3L_20233633_20234218;chr3L_20233633_20234418;chr3L_20233633_20234374 chr3L_20233633_20234944 chr3L_20232963_20233632;chr3L_20234945_20234989 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 N intron_retention lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,RI_chr2L_22823579_22823640,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22820498_22831603 chr2L_22820497_22820498;chr2L_22831603_22831604 chr2L_22820398_22820497;chr2L_22831604_22831632 34.19 NA NA NA NA NA 22.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 46.15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor kermit,I_chr2R_4035901_4043493 chr2R - chr2R_4035901_4043918 chr2R_4035901_4043559 chr2R_4035801_4035900;chr2R_4043919_4044128 74.29 76.74 70.59 62.00 69.44 72.73 77.59 57.69 77.78 69.57 64.29 71.43 63.64 75.00 70.18 64.29 64.44 79.41 81.25 61.74 87.50 72.92 67.61 74.55 76.92 80.56 73.58 88.24 73.68 83.02 72.00 63.27 76.39 71.05 74.00 83.33 84.31 80.85 71.93 72.97 71.43 74.16 80.00 76.47 81.40 75.00 73.68 77.11 76.32 74.29 76.06 68.42 85.19 67.57 76.47 76.92 79.07 84.29 K intron_retention cno,I_chr3R_999718_999986,I_chr3R_999737_999777 chr3R - chr3R_1007795_1008141 chr3R_1007794_1007795;chr3R_1008141_1008142 chr3R_1007270_1007794;chr3R_1008142_1008313 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG30460,F_chr2R_12957263_12957403 chr2R - chr2R_12960418_12963153 chr2R_12960418_12962946 chr2R_12960035_12960417;chr2R_12963154_12963611 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG7484,RI_chr3L_17647825_17647881,RI_chr3L_17647827_17648317 chr3L + chr3L_17647827_17648317 chr3L_17647827_17647881;chr3L_17648001_17648317 chr3L_17647882_17648000 chr3L_17647729_17647826;chr3L_17648318_17648417 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.54 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.56 100.00 100.00 100.00 100.00 100.00 100.00 99.25 100.00 98.88 100.00 100.00 100.00 100.00 100.00 100.00 98.80 100.00 100.00 99.23 100.00 98.98 99.49 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.32 100.00 100.00 100.00 99.15 100.00 100.00 100.00 K intron_retention 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5992336_5992445 chr2R_5992335_5992336;chr2R_5992445_5992446 chr2R_5992222_5992335;chr2R_5992446_5992572 0.00 0.00 0.00 0.23 0.00 0.00 0.11 0.16 0.14 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.21 0.37 0.32 0.00 0.22 1.01 2.52 1.20 0.00 0.12 0.00 0.29 0.19 0.00 0.00 0.00 0.00 0.24 0.21 0.17 0.21 0.00 0.00 0.37 0.00 0.00 0.19 0.15 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.24 0.00 K alternative_acceptor mnb chrX - chrX_17762403_17763014;chrX_17762203_17763014 chrX_17762200_17763014 chrX_17763015_17763849;chrX_17762180_17762199 8.33 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 10.00 16.67 0.00 0.00 0.00 0.00 NA 0.00 11.11 0.00 11.11 8.33 7.69 28.57 NA 25.00 20.00 26.67 0.00 0.00 NA 14.29 0.00 10.00 NA 7.14 18.18 13.33 0.00 NA 9.09 0.00 13.33 20.00 0.00 22.22 16.67 0.00 10.00 8.33 14.29 16.67 14.29 NA 16.67 25.00 25.00 K jcn_only_AA CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516728_21517821;chr3L_21516728_21517023 chr3L_21516728_21516994 chr3L_21516383_21516727 2.17 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 4.35 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG12384,I_chr2R_7245925_7246462,RI_chr2R_7245930_7246231,RI_chr2R_7245930_7246259 chr2R - chr2R_7245930_7246462 chr2R_7245930_7246231 chr2R_7245841_7245929;chr2R_7246463_7246526 3.75 1.42 4.43 8.95 3.92 3.53 8.33 5.05 6.07 1.57 5.56 2.79 8.33 4.00 3.49 5.81 6.73 3.41 6.11 3.70 4.27 7.25 2.04 3.53 3.75 4.67 5.91 5.19 4.55 1.86 21.16 2.44 1.49 6.93 4.14 4.69 1.64 1.27 2.04 3.27 5.96 4.07 2.61 2.60 2.20 2.79 2.06 3.31 4.86 3.57 3.81 4.41 2.65 2.02 3.50 2.37 4.52 2.08 K intron_retention RpII140 chr3R + chr3R_9954997_9955055 chr3R_9954996_9954997;chr3R_9955055_9955056 chr3R_9954062_9954996;chr3R_9955056_9955833 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette I_chr3R_1303481_1304607,CG31550 chr3R + chr3R_1312607_1313556 chr3R_1312607_1312781;chr3R_1312900_1313556 chr3R_1312782_1312899 chr3R_1312598_1312606;chr3R_1313557_1314029 73.68 76.47 73.33 65.38 83.33 76.47 86.21 85.19 84.85 63.64 90.91 70.00 56.25 93.33 85.00 81.48 80.00 90.48 90.91 76.74 85.71 48.65 71.43 68.42 66.67 64.29 81.25 76.47 70.97 80.95 42.50 76.19 73.68 91.67 53.85 36.84 51.72 85.71 50.00 58.82 60.87 78.05 89.47 76.67 63.16 70.00 58.33 70.00 80.00 63.33 68.97 64.71 78.57 53.85 84.62 70.37 70.97 79.55 K alternative_donor CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042891_5042960;chr2L_5042891_5042983 chr2L_5042891_5043077 chr2L_5042835_5042890;chr2L_5043078_5043083 23.26 20.00 24.14 26.39 21.62 21.43 17.44 26.83 25.98 27.59 24.24 24.07 41.03 34.48 27.27 28.07 29.17 15.79 20.34 26.28 26.67 20.93 25.86 26.42 24.39 12.77 10.87 22.22 8.57 11.90 25.42 12.82 10.00 24.18 23.26 19.51 18.37 19.44 14.29 9.09 10.00 31.91 31.25 9.38 14.89 19.44 23.53 5.77 20.20 40.82 22.03 36.17 26.47 11.76 29.85 25.00 30.91 10.71 K alternative_last_exon CG11727,CREI_chrX_11327451_11328532 chrX - chrX_11327451_11329415 chrX_11328848_11329415 chrX_11324552_11327450 chrX_11328712_11328847 chrX_11329416_11329514 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 7.69 7.69 0.00 0.00 0.00 6.25 3.23 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1416,I_chr2L_21758100_21758179,I_chr2L_21758143_21758183,I_chr2L_21758143_21758209 chr2L + chr2L_21758143_21758209 chr2L_21758142_21758143;chr2L_21758209_21758210 chr2L_21758116_21758142;chr2L_21758210_21758279 99.44 99.17 99.30 99.47 98.86 100.00 99.50 100.00 99.65 98.63 99.10 100.00 99.21 99.36 99.47 100.00 99.03 99.17 99.34 99.72 99.17 100.00 99.44 100.00 100.00 99.43 100.00 99.33 99.29 99.17 99.46 99.14 100.00 99.53 99.32 100.00 99.20 98.92 99.30 98.88 100.00 99.65 100.00 100.00 98.30 99.03 100.00 100.00 99.69 98.70 100.00 99.18 100.00 99.27 99.37 99.39 99.56 99.57 K alternative_donor Vap-33-1 chrX + chrX_3843406_3845447 chrX_3843747_3845447 chrX_3845448_3845600;chrX_3843337_3843405 100.00 100.00 100.00 100.00 100.00 100.00 99.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention I_chr3R_8822346_8822403,CG7518 chr3R + chr3R_8832937_8833246 chr3R_8832936_8832937;chr3R_8833246_8833247 chr3R_8832068_8832936;chr3R_8833247_8833436 18.18 22.95 15.58 14.15 18.18 20.00 46.97 14.41 19.75 50.00 19.05 22.06 22.58 17.54 17.28 20.00 17.19 25.00 19.48 32.12 16.46 22.76 18.93 16.54 25.00 30.36 19.05 18.42 21.43 12.21 23.46 23.36 14.41 19.63 17.28 21.33 14.81 16.30 12.23 13.92 23.26 18.67 16.67 13.75 15.50 19.43 14.69 17.65 16.79 13.59 16.91 18.18 15.38 22.22 18.29 16.08 16.57 15.20 K intron_retention Rip11,RI_chrX_18530353_18530870,RI_chrX_18544139_18544185 chrX - chrX_18534231_18534298 chrX_18534230_18534231;chrX_18534298_18534299 chrX_18533497_18534230;chrX_18534299_18534443 0.00 0.00 0.00 0.00 0.50 0.54 0.00 0.14 0.37 0.00 0.00 0.14 0.00 0.58 0.00 0.23 0.25 0.00 0.46 0.26 0.23 0.00 0.29 0.16 0.52 0.00 0.94 0.92 0.00 0.00 0.36 0.00 0.00 0.66 0.00 0.49 0.13 0.16 0.00 0.00 0.24 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.24 0.16 0.00 0.00 0.00 0.00 0.00 0.38 0.00 K intron_retention Ras85D,I_chr3R_5338160_5338509,EI_chr3R_5338175_5338279,I_chr3R_5338175_5338299 chr3R - chr3R_5338175_5338509 chr3R_5338174_5338175;chr3R_5338509_5338510 chr3R_5338075_5338174;chr3R_5338510_5338609 0.51 1.57 0.00 0.00 0.00 0.00 0.99 0.75 1.19 0.00 0.00 1.08 1.68 1.59 0.51 2.39 0.00 0.63 0.61 0.47 0.00 1.50 1.46 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.79 0.00 0.00 0.00 1.83 0.00 0.83 0.00 0.62 0.72 0.83 0.00 0.00 0.00 0.66 1.29 1.03 1.87 2.25 1.67 0.00 0.97 2.00 0.00 0.00 K alternative_acceptor CG4230,I_chr2L_5096701_5097032,RI_chr2L_5097236_5097536 chr2L + chr2L_5096701_5097035 chr2L_5096701_5097032 chr2L_5096601_5096700;chr2L_5097036_5097132 0.00 NA 0.00 NA NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA NA NA NA NA 5.88 NA 6.67 NA NA NA 0.00 NA 0.00 NA K intron_retention loco,I_chr3R_18448629_18449211,I_chr3R_18456329_18462522 chr3R - chr3R_18446578_18446672 chr3R_18446577_18446578;chr3R_18446672_18446673 chr3R_18446509_18446577;chr3R_18446673_18446737 80.56 84.62 72.73 92.31 NA 58.82 66.67 82.35 79.17 84.62 80.00 84.21 NA 83.33 90.00 76.92 69.23 81.82 54.55 84.62 NA 84.93 76.92 80.56 80.00 NA 72.73 86.05 70.37 76.19 63.64 78.26 65.00 76.92 88.89 84.62 83.78 70.83 85.29 87.18 88.46 80.95 60.00 80.65 82.76 85.71 96.77 80.95 76.19 67.86 76.74 80.95 75.00 86.21 73.33 68.18 73.33 94.44 N alternative_acceptor Aats-val,I_chr2R_9088330_9088393,I_chr2R_9088412_9088502 chr2R + chr2R_9088330_9088393;chr2R_9088330_9088502 chr2R_9088330_9088517 chr2R_9088312_9088329;chr2R_9088518_9088602 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD vlc chr2R + chr2R_1589953_1590371;chr2R_1589894_1590371;chr2R_1589799_1590371;chr2R_1589805_1590371;chr2R_1589807_1590371;chr2R_1590294_1590371;chr2R_1589722_1590371;chr2R_1589693_1590371 chr2R_1590318_1590371 chr2R_1590372_1590451;chr2R_1589612_1589692 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6854,E_chr3L_15091621_15103920,RI_chr3L_15102059_15102345 chr3L + chr3L_15102059_15102437 chr3L_15102058_15102059;chr3L_15102437_15102438 chr3L_15102027_15102058;chr3L_15102438_15102445 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention grk chr2L - chr2L_8433273_8433414 chr2L_8433272_8433273;chr2L_8433414_8433415 chr2L_8433013_8433272;chr2L_8433415_8433667 0.00 0.00 5.71 0.00 0.00 0.00 12.50 1.79 4.23 0.00 0.00 6.56 0.00 0.00 0.00 1.92 7.41 0.00 2.63 2.33 0.00 0.00 0.00 8.70 0.00 0.00 5.88 7.69 6.67 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 N intron_retention dpr3 chr2L - chr2L_2062300_2066519 chr2L_2062299_2062300;chr2L_2066519_2066520 chr2L_2061975_2062299;chr2L_2066520_2066597 31.82 NA NA 31.82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG4598,RI_chr2L_9920233_9920324 chr2L + chr2L_9918708_9918874 chr2L_9918707_9918708;chr2L_9918874_9918875 chr2L_9918658_9918707;chr2L_9918875_9919108 0.00 0.00 4.26 8.51 0.00 0.00 4.62 1.37 0.00 0.00 0.00 1.23 0.00 0.00 1.82 1.67 0.00 0.00 0.00 0.00 0.00 0.00 2.56 2.50 5.26 3.92 16.67 NA 19.35 0.00 0.00 2.50 2.94 0.00 0.00 20.69 0.00 0.00 2.50 1.67 13.79 0.00 0.00 0.00 0.00 5.26 2.38 0.00 2.56 0.00 4.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG13295 chr3L - chr3L_6067889_6067948 chr3L_6067888_6067889;chr3L_6067948_6067949 chr3L_6067648_6067888;chr3L_6067949_6068072 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 98.36 96.55 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention MEP-1,CG42245,noncoding_10195,CG1143 chr3L + chr3L_2640517_2640577 chr3L_2640516_2640517;chr3L_2640577_2640578 chr3L_2640337_2640516;chr3L_2640578_2640926 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 1.98 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042891_5042960 chr2L_5042890_5042891;chr2L_5042960_5042961 chr2L_5042835_5042890;chr2L_5042961_5043016 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 1.52 0.00 1.54 0.00 0.00 1.16 0.00 3.64 0.00 0.00 0.00 0.00 1.23 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA su(s),chrX_531053_531420.0,chrX_531653_531971.0 chrX + chrX_530313_532495 chrX_530313_532365 chrX_529989_530312;chrX_532496_532753 98.08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA 96.15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD inaE chrX + chrX_13678262_13679739;chrX_13678223_13679739 chrX_13678310_13679739 chrX_13679740_13679985;chrX_13677782_13678222 97.14 95.45 100.00 100.00 100.00 92.11 100.00 97.70 98.52 100.00 92.86 98.65 100.00 96.67 98.08 97.03 95.56 100.00 100.00 98.15 100.00 89.47 94.87 95.56 97.06 100.00 97.06 96.15 96.97 95.83 93.94 96.67 98.11 97.98 95.74 95.00 98.55 97.92 93.18 98.21 94.23 96.20 98.18 95.65 NA 91.67 100.00 92.98 98.11 100.00 95.65 94.44 100.00 100.00 98.08 95.65 97.22 97.06 K intron_retention pyd,I_chr3R_4654041_4664113,I_chr3R_4749124_4756437 chr3R - chr3R_4654041_4657863 chr3R_4654040_4654041;chr3R_4657863_4657864 chr3R_4653941_4654040;chr3R_4657864_4657996 13.25 17.50 10.53 19.51 6.25 NA 37.50 45.45 27.27 14.81 NA 25.00 0.00 41.67 31.58 30.77 13.33 26.67 25.00 25.00 23.08 7.69 16.39 9.52 13.16 6.67 11.90 6.25 4.35 13.33 36.36 7.69 17.50 30.00 12.12 13.33 9.72 4.44 9.46 15.52 7.14 25.00 NA 7.14 0.00 5.26 2.70 29.63 31.25 5.00 13.11 8.70 9.52 0.00 33.33 6.00 10.53 33.33 K intron_retention CG11696,CG11695 chrX + chrX_11468017_11468085 chrX_11468016_11468017;chrX_11468085_11468086 chrX_11467699_11468016;chrX_11468086_11469227 0.00 0.00 0.00 8.33 NA 0.00 4.35 8.33 4.65 0.00 NA 0.00 0.00 NA 7.41 0.00 NA NA NA 9.09 NA 9.09 0.00 0.00 2.33 NA 2.86 2.56 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 NA 5.77 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention F_chr3R_19799277_19802225,CG5902,Rab7 chr3R + chr3R_19812669_19812753 chr3R_19812668_19812669;chr3R_19812753_19812754 chr3R_19812606_19812668;chr3R_19812754_19812932 7.79 6.67 13.33 9.68 NA NA 19.35 9.52 13.79 0.00 NA 7.69 NA NA NA NA NA 4.17 14.29 6.67 0.00 38.46 15.79 2.70 11.76 14.29 31.58 30.77 17.50 0.00 3.70 9.52 5.71 3.70 10.53 20.00 5.56 6.06 10.00 12.12 9.09 7.89 NA 6.25 0.00 10.53 6.67 4.44 12.50 0.00 6.45 6.67 12.50 5.56 10.00 5.26 0.00 0.00 K jcn_only_AD Lerp chr3R - chr3R_22688433_22688824;chr3R_22688433_22688796;chr3R_22688433_22688772 chr3R_22688433_22688494 chr3R_22688359_22688432;chr3R_22688825_22688828 28.57 NA NA 28.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RpS25,I_chr3R_7041333_7041414,I_chr3R_7041347_7041413,I_chr3R_7041347_7041556,RI_chr3R_7044164_7044221 chr3R - chr3R_7041347_7041471 chr3R_7041346_7041347;chr3R_7041471_7041472 chr3R_7041267_7041346;chr3R_7041472_7041483 100.00 99.96 99.95 99.97 100.00 100.00 99.96 100.00 99.97 100.00 100.00 99.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.92 99.97 100.00 99.94 99.96 100.00 99.96 100.00 100.00 99.97 99.96 100.00 100.00 99.95 99.89 100.00 100.00 100.00 99.97 100.00 100.00 100.00 100.00 100.00 100.00 99.98 100.00 100.00 100.00 100.00 99.97 100.00 100.00 100.00 99.97 99.99 K intron_retention CG17806,CG17802 chr3R - chr3R_13628728_13628777 chr3R_13628727_13628728;chr3R_13628777_13628778 chr3R_13627709_13628727;chr3R_13628778_13628954 71.43 77.78 80.00 69.23 NA 50.00 76.92 73.33 71.43 NA NA 68.75 NA NA 76.92 90.00 88.89 NA 41.67 61.11 90.00 NA 90.00 71.43 72.73 70.00 76.47 72.73 NA NA 80.95 NA 69.23 75.00 58.33 100.00 56.25 60.00 73.33 61.11 NA 73.68 NA 70.00 NA 72.73 NA NA 68.75 71.43 66.67 NA NA NA NA 70.00 54.55 70.00 K cassette ssp4,I_chr2R_13409412_13410357,RI_chr2R_13409412_13411004,I_chr2R_13409412_13411328,I_chr2R_13409412_13411588,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13408434_13411328;chr2R_13408434_13410357;chr2R_13408434_13411588;chr2R_13408434_13411004 chr2R_13408434_13409210;chr2R_13409406_13411328,chr2R_13409406_13410357,chr2R_13409406_13411588,chr2R_13409406_13411004 chr2R_13409211_13409405 chr2R_13408151_13408433;chr2R_13411589_13411688 71.88 70.27 83.33 59.21 63.16 63.89 20.51 81.97 70.59 36.36 55.88 85.00 47.22 75.00 67.35 79.55 77.50 69.77 77.27 86.96 60.00 44.83 74.29 74.55 70.97 69.09 75.51 68.97 42.50 66.67 73.53 75.00 77.50 71.67 74.36 92.50 70.21 67.74 72.73 55.07 54.84 67.78 63.16 68.18 80.00 74.51 76.32 76.67 78.79 56.82 75.47 78.12 82.35 73.53 64.58 76.19 78.95 71.88 K intron_retention CG5174,F_chr2R_14309059_14311473 chr2R + chr2R_14312540_14313468 chr2R_14312539_14312540;chr2R_14313468_14313469 chr2R_14312377_14312539;chr2R_14313469_14313709 100.00 100.00 100.00 98.86 100.00 96.15 98.81 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 97.56 100.00 100.00 100.00 100.00 88.89 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 97.56 97.37 100.00 100.00 K intron_retention CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1533802_1533856 chr3L_1533801_1533802;chr3L_1533856_1533857 chr3L_1533494_1533801;chr3L_1533857_1533977 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.38 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA K alternative_donor Dif,I_chr2L_17414333_17414528,I_chr2L_17418395_17418487 chr2L - chr2L_17420114_17428007 chr2L_17420114_17427655 chr2L_17420066_17420113;chr2L_17428008_17428172 98.00 100.00 100.00 97.50 100.00 100.00 100.00 98.00 98.55 80.00 100.00 97.83 97.37 100.00 100.00 97.92 100.00 100.00 96.55 97.67 100.00 84.00 97.06 95.24 100.00 94.44 95.65 93.33 100.00 95.00 100.00 90.91 88.46 97.87 100.00 95.24 94.12 100.00 94.74 100.00 100.00 98.00 100.00 95.24 100.00 94.74 92.86 95.45 100.00 100.00 97.14 100.00 93.33 100.00 93.75 100.00 100.00 95.83 K intron_retention sgg,I_chrX_2528059_2528637,I_chrX_2528131_2535622,RI_chrX_2528212_2535830,I_chrX_2528367_2535622,I_chrX_2528472_2535622,I_chrX_2529065_2563945,I_chrX_2536127_2563666,I_chrX_2563342_2563666,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2528059_2535830 chrX_2528058_2528059;chrX_2535830_2535831 chrX_2528052_2528058;chrX_2535831_2535930 78.57 89.47 73.91 75.86 80.00 81.25 70.00 88.89 79.49 66.67 70.59 84.62 91.67 80.00 85.71 72.73 68.75 64.71 73.68 75.00 75.00 91.67 64.29 70.59 72.73 84.21 81.82 NA NA 69.23 85.00 NA 61.90 85.19 90.91 92.31 75.00 87.50 NA 53.33 NA 86.11 84.62 93.33 NA 60.00 88.89 NA 78.12 78.57 76.47 69.23 66.67 NA 86.67 85.71 90.00 60.00 K intron_retention RI_chr3R_4807638_4807736,I_chr3R_4807909_4807960,CG11967 chr3R + chr3R_4807638_4807701 chr3R_4807637_4807638;chr3R_4807701_4807702 chr3R_4807584_4807637;chr3R_4807702_4807747 30.77 NA NA NA NA NA NA NA 35.71 NA NA 25.00 NA NA NA 72.73 NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA 38.46 NA NA NA NA NA 25.00 28.57 NA NA NA NA NA 30.77 NA NA NA NA 30.77 NA NA NA NA 33.33 30.77 12.50 K intron_retention CG17754 chrX + chrX_9147892_9147949 chrX_9147891_9147892;chrX_9147949_9147950 chrX_9147684_9147891;chrX_9147950_9148072 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 NA 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 K intron_retention Pkn,EI_chr2R_5143544_5143611,CI_chr2R_5143544_5146344,I_chr2R_5171635_5172166 chr2R - chr2R_5143215_5146344 chr2R_5143214_5143215;chr2R_5146344_5146345 chr2R_5143018_5143214;chr2R_5146345_5146444 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 3.64 0.00 0.00 9.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.37 3.95 0.00 0.00 0.00 3.90 0.00 1.64 0.00 0.00 0.00 4.65 0.00 6.67 0.00 1.35 0.00 1.06 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 4.35 4.35 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 K jcn_only_AD CG1399,I_chr2R_3574133_3574191 chr2R - chr2R_3574133_3574212 chr2R_3574133_3574191 chr2R_3574049_3574132;chr2R_3574213_3574291 0.00 0.00 1.61 0.00 2.17 0.00 0.00 1.43 1.60 1.92 2.63 0.00 0.00 1.85 1.67 0.00 1.89 0.00 6.38 2.63 2.63 0.00 0.00 1.30 0.00 2.70 3.45 0.00 1.43 0.00 2.53 0.00 0.00 1.09 0.00 0.00 1.77 0.00 0.00 0.93 2.22 0.00 2.56 2.38 0.00 0.00 0.00 0.00 1.18 1.89 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3680,Pka-R1 chr3L + chr3L_20805568_20805623 chr3L_20805567_20805568;chr3L_20805623_20805624 chr3L_20805357_20805567;chr3L_20805624_20805770 3.75 3.85 3.12 26.19 3.33 0.00 4.44 3.28 5.08 0.00 0.00 8.20 0.00 0.00 0.00 10.00 0.00 2.63 11.76 7.27 6.06 8.33 7.41 0.00 10.53 18.42 9.76 13.79 0.00 0.00 4.55 NA 6.25 7.69 5.00 0.00 0.00 0.00 5.00 2.13 33.33 7.55 0.00 2.63 7.41 19.05 0.00 9.09 3.64 5.71 2.50 4.35 9.09 0.00 0.00 0.00 2.70 0.00 K intron_retention l(2)03709,I_chr2R_14707617_14707700,I_chr2R_14708048_14708095 chr2R + chr2R_14707007_14707125 chr2R_14707006_14707007;chr2R_14707125_14707126 chr2R_14707001_14707006;chr2R_14707126_14707270 75.00 70.00 56.25 55.56 63.64 66.67 80.56 37.04 65.00 80.95 53.33 64.71 NA 88.89 57.14 64.29 NA NA 75.00 57.14 55.56 77.78 86.96 93.75 100.00 70.37 100.00 88.89 90.00 64.29 60.71 NA NA 52.00 75.00 97.50 94.12 88.89 100.00 53.85 84.62 55.56 NA NA 35.71 77.78 100.00 68.75 61.11 93.33 93.33 92.31 77.78 100.00 45.00 100.00 100.00 46.67 K intron_retention CG5335 chr2R + chr2R_14509389_14509505 chr2R_14509388_14509389;chr2R_14509505_14509506 chr2R_14508947_14509388;chr2R_14509506_14510093 1.27 0.00 2.27 4.44 0.00 3.85 0.00 3.33 3.16 0.00 0.00 2.13 2.70 0.00 6.12 4.08 0.00 5.71 0.00 2.61 0.00 4.35 1.27 0.00 0.00 2.78 0.00 5.00 0.00 0.00 3.45 0.00 5.71 5.88 0.00 3.23 0.00 0.00 0.00 2.22 0.00 2.30 0.00 0.00 0.00 3.57 0.00 1.82 2.53 8.33 4.48 0.00 0.00 0.00 4.44 5.26 0.00 3.57 K cassette noncoding_7598 chr2R + chr2R_13586674_13587362 chr2R_13586674_13586855;chr2R_13586955_13587362 chr2R_13586856_13586954 chr2R_13586657_13586673;chr2R_13587363_13587402 100.00 100.00 100.00 95.00 NA 90.91 100.00 93.33 95.65 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 77.78 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor su(f),I_chrXHet_77570_78035 chrXHet + chrXHet_77832_78035;chrXHet_77570_78035 chrXHet_77736_78035 chrXHet_78036_78135;chrXHet_77470_77569 95.87 97.75 98.00 92.31 95.77 96.30 98.17 94.48 96.20 94.55 95.77 97.59 95.59 92.96 97.17 94.85 96.77 95.77 94.25 93.38 97.14 79.63 96.46 94.64 95.89 97.89 97.30 94.12 95.24 95.12 91.82 93.51 97.85 96.92 95.45 96.20 98.13 95.24 95.65 91.30 97.37 95.38 93.06 98.84 96.59 95.96 96.47 95.87 96.75 94.44 97.25 96.61 93.85 94.37 96.46 95.35 98.00 96.26 K alternative_donor CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1666219_1670203;chr2R_1666219_1670219;chr2R_1666219_1670325;chr2R_1666219_1670281 chr2R_1666219_1669803 chr2R_1666119_1666218;chr2R_1670326_1670328 32.35 25.00 33.33 41.46 29.17 32.00 39.58 30.00 33.33 29.41 33.33 30.16 25.00 40.62 28.21 42.62 33.33 37.50 43.59 25.26 24.32 20.83 26.67 42.11 31.58 35.71 36.36 37.50 28.00 36.67 28.57 35.29 32.61 30.00 36.00 50.00 30.77 33.33 42.11 24.49 19.05 32.91 32.35 31.25 23.53 25.00 30.00 33.33 31.52 45.45 52.17 38.10 25.00 40.00 31.37 27.27 37.50 25.00 K jcn_only_AD dorsal,RI_chr2L_17438018_17439189,FI_chr2L_17449369_17450215,noncoding_3500,RI_chr2L_17450002_17450219 chr2L - chr2L_17449369_17450325;chr2L_17449369_17449875;chr2L_17449369_17450310;chr2L_17449369_17450215 chr2L_17449369_17450219 chr2L_17449296_17449368;chr2L_17450326_17450359 82.46 76.00 80.49 78.64 71.43 90.79 74.47 84.35 78.10 79.55 83.33 91.78 80.36 81.54 92.50 81.21 75.00 89.09 70.13 89.96 82.81 77.78 81.00 77.78 97.22 74.00 87.50 77.27 76.79 86.14 89.55 88.54 85.83 82.22 93.00 81.08 72.41 74.19 84.09 81.75 77.69 87.40 80.43 87.10 80.95 81.94 90.00 82.75 82.55 82.46 83.33 83.10 89.47 94.83 87.50 89.55 78.57 83.85 K alternative_acceptor CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15766003_15766068;chrX_15766003_15766062 chrX_15766003_15766047 chrX_15765903_15766002;chrX_15766069_15766147 0.00 0.00 0.00 0.00 0.00 NA 4.55 4.17 0.00 NA 0.00 5.26 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 14.29 NA NA NA NA 0.00 NA NA 4.76 NA NA NA NA NA 8.33 NA 0.00 0.00 0.00 NA NA NA NA 4.55 NA 9.09 NA NA NA 0.00 NA NA NA K intron_retention CG17883,I_chr2R_560147_560511,I_chr2R_560547_560618 chr2R + chr2R_560547_560618 chr2R_560546_560547;chr2R_560618_560619 chr2R_560512_560546;chr2R_560619_560642 91.29 NA NA 93.33 NA 100.00 95.24 95.00 89.29 NA NA 93.33 100.00 86.67 100.00 95.83 90.91 77.78 92.31 83.33 NA 66.67 69.23 NA 66.67 NA NA NA NA 81.82 88.89 91.67 70.00 91.67 NA NA 90.00 NA NA 75.00 NA 100.00 84.62 100.00 87.50 91.67 NA 100.00 92.86 100.00 NA NA NA NA 90.91 81.25 93.33 88.89 K alternative_acceptor smi35A,I_chr2L_14197568_14197656,I_chr2L_14197587_14197656,E_chr2L_14222082_14233893,RI_chr2L_14233579_14233647 chr2L - chr2L_14197568_14197656;chr2L_14197294_14197656 chr2L_14197587_14197656 chr2L_14197657_14197756;chr2L_14196927_14197293 0.00 0.00 0.00 3.03 0.00 0.00 3.57 2.56 1.30 0.00 0.00 0.00 5.13 0.00 0.00 0.00 0.00 8.70 0.00 3.12 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG12213 chr3R - chr3R_7792009_7792209 chr3R_7792009_7792176 chr3R_7791324_7792008;chr3R_7792210_7792455 33.33 32.43 30.65 33.61 32.76 30.14 33.85 27.37 29.25 28.21 25.93 34.96 27.27 28.85 33.33 26.87 26.67 35.82 26.67 30.08 34.78 47.73 28.74 32.95 40.48 35.21 41.43 37.88 41.24 35.21 34.55 30.67 34.51 32.97 33.33 32.79 34.29 40.00 36.25 38.97 42.86 33.09 21.74 40.26 35.54 32.11 32.76 33.33 26.83 24.56 40.48 36.96 28.17 33.33 25.32 28.92 36.62 39.88 K intron_retention CG5004,noncoding_24336,E_chrX_17024712_17024996 chrX + chrX_17001669_17001774 chrX_17001668_17001669;chrX_17001774_17001775 chrX_17001624_17001668;chrX_17001775_17002091 94.44 87.50 94.44 92.86 NA 100.00 93.75 93.33 92.31 NA NA 95.45 90.00 92.31 92.31 96.00 NA 100.00 100.00 100.00 100.00 NA NA NA NA 100.00 90.00 NA 100.00 NA 100.00 NA 92.31 92.00 88.89 88.89 NA NA NA 93.75 NA 96.15 83.33 NA NA 88.89 NA 95.00 96.15 NA 100.00 100.00 NA NA 100.00 NA NA NA K alternative_acceptor EDTP chr2R - chr2R_13320873_13320924;chr2R_13320861_13320924 chr2R_13320840_13320924 chr2R_13320925_13321563;chr2R_13320696_13320839 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 95.83 NA NA 97.44 100.00 NA 93.75 94.44 NA 100.00 100.00 100.00 NA 95.83 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 96.77 100.00 100.00 100.00 100.00 96.77 97.14 100.00 94.44 NA NA 100.00 100.00 100.00 100.00 K jcn_only_AD mub,RI_chr3L_21901021_21901163,I_chr3L_21908756_21909179 chr3L + chr3L_21873042_21881733 chr3L_21873109_21881733 chr3L_21881734_21881792;chr3L_21872950_21873041 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG30046 chr2R + chr2R_8202525_8202596 chr2R_8202525_8202583 chr2R_8202127_8202524;chr2R_8202597_8202796 100.00 93.75 94.74 96.30 100.00 93.33 88.89 97.06 97.62 100.00 94.12 96.30 94.12 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 NA 100.00 87.50 92.86 NA 95.45 100.00 100.00 88.89 95.65 100.00 94.74 100.00 100.00 90.48 100.00 100.00 100.00 100.00 100.00 93.33 95.65 100.00 95.00 100.00 100.00 NA 95.00 100.00 100.00 95.74 K jcn_only_AA exba,I_chr3R_1423660_1424665,I_chr3R_1424091_1424665,snoRNA:Psi28S-2442b,snoRNA:Psi28S-2442a,I_chr3R_1425087_1425925,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1423967_1424665 chr3R_1424065_1424665 chr3R_1424666_1424765;chr3R_1423926_1423966 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.90 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.64 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD eIF-5A,I_chr2R_19945430_19946454,I_chr2R_19945576_19946006,I_chr2R_19945723_19946006,I_chr2R_19945783_19946006,I_chr2R_19945852_19946006,I_chr2R_19945875_19946006,I_chr2R_19945921_19946006,I_chr2R_19946299_19946454,I_chr2R_19946657_19946733,I_chr2R_19948517_19948682 chr2R + chr2R_19945576_19946006;chr2R_19945426_19946006;chr2R_19945875_19946006;chr2R_19945430_19946006 chr2R_19945921_19946006 chr2R_19946007_19946106;chr2R_19945343_19945425 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.02 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.05 0.03 0.00 0.00 0.06 0.00 0.02 0.06 0.00 0.02 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.04 0.00 0.10 0.00 0.09 0.00 0.00 0.02 0.04 0.00 0.00 K intron_retention CG3566 chrX - chrX_6169204_6170260 chrX_6169203_6169204;chrX_6170260_6170261 chrX_6169003_6169203;chrX_6170261_6170329 52.94 50.00 NA NA 16.67 NA 69.23 47.06 40.00 66.67 NA 80.95 NA 58.33 23.81 60.00 NA NA 45.45 40.00 NA NA NA 53.85 NA NA NA NA 81.25 63.64 65.00 40.00 33.33 47.06 NA NA 57.14 NA 52.94 58.82 52.94 60.00 50.00 70.00 48.00 51.85 33.33 60.87 56.25 63.64 60.00 NA 45.45 45.45 50.00 46.15 50.00 64.00 K intron_retention MED1 chr3L - chr3L_21623014_21624032 chr3L_21623013_21623014;chr3L_21624032_21624033 chr3L_21621425_21623013;chr3L_21624033_21625939 50.00 43.33 57.14 55.00 63.64 55.00 76.92 75.00 47.06 34.62 60.00 50.00 NA 57.14 61.90 33.33 NA 31.58 63.64 56.10 41.18 34.88 39.29 45.95 56.00 58.33 48.15 69.44 61.40 40.00 42.86 58.73 42.42 65.00 50.00 48.84 32.35 50.00 41.82 57.14 66.15 51.72 63.64 48.57 54.90 53.57 45.00 47.50 48.48 63.89 36.36 41.18 32.56 35.29 65.00 45.16 43.75 50.00 K intron_retention CG31743 chr2L + chr2L_16885736_16885795 chr2L_16885735_16885736;chr2L_16885795_16885796 chr2L_16885264_16885735;chr2L_16885796_16886280 0.00 NA NA 11.11 NA NA 0.00 0.00 0.00 11.11 NA 0.00 NA NA NA NA NA NA NA 4.17 NA 0.00 NA 0.00 0.00 NA 7.14 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 4.76 0.00 NA NA 0.00 0.00 0.00 3.85 12.50 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 K alternative_donor ptr,I_chrX_2243281_2243373,I_chrX_2243647_2248215,I_chrX_2243647_2248739 chrX - chrX_2243647_2248219 chrX_2243647_2247736 chrX_2243547_2243646;chrX_2248220_2248298 36.60 NA NA 33.33 NA NA 44.44 33.33 25.00 NA NA 42.86 NA NA NA 44.44 NA NA 40.00 36.36 NA 27.27 25.00 12.50 NA NA 50.00 36.84 100.00 33.33 40.00 NA 50.00 30.00 NA 33.33 NA NA NA 66.67 NA 14.29 NA NA NA NA NA NA 37.50 NA 50.00 NA NA NA 33.33 NA NA NA K intron_retention Ca-P60A,RI_chr2R_19820338_19820541,I_chr2R_19820338_19821424,CEI_chr2R_19820338_19821830,I_chr2R_19820338_19823289 chr2R - chr2R_19820338_19820541 chr2R_19820337_19820338;chr2R_19820541_19820542 chr2R_19820238_19820337;chr2R_19820542_19820641 70.00 NA NA 70.00 NA NA 92.31 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 53.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 77.78 NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG7841,RI_chr3L_15499446_15500898,RI_chr3L_15500713_15500898 chr3L - chr3L_15499249_15499326 chr3L_15499248_15499249;chr3L_15499326_15499327 chr3L_15499168_15499248;chr3L_15499327_15499445 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 8.00 NA NA NA 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 K intron_retention Pka-R1,CG3288 chr3L + chr3L_20826758_20826832 chr3L_20826757_20826758;chr3L_20826832_20826833 chr3L_20826383_20826757;chr3L_20826833_20826969 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 15.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA 0.00 0.00 NA 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K intron_retention Nmda1,R_chr2R_8766216_8766562,I_chr2R_8766652_8766956,I_chr2R_8766728_8766791,I_chr2R_8766728_8767623 chr2R - chr2R_8766728_8766952 chr2R_8766727_8766728;chr2R_8766952_8766953 chr2R_8766713_8766727;chr2R_8766953_8767161 10.53 NA 10.53 9.09 5.56 7.69 22.73 17.86 4.55 NA 6.67 10.00 NA 7.69 NA NA 14.29 NA NA 10.00 11.76 NA 10.53 NA NA NA NA 52.17 7.14 NA 10.53 NA NA 12.50 NA NA NA NA NA 3.45 NA 13.33 NA 12.00 NA NA NA NA 13.64 NA 12.50 NA NA NA 7.69 NA NA NA K intron_retention Trx-2,I_chr2L_9613459_9615301,I_chr2L_9613592_9615301,E_chr2L_9615344_9615833,I_chr2L_9615252_9615301 chr2L + chr2L_9613376_9613432 chr2L_9613375_9613376;chr2L_9613432_9613433 chr2L_9613359_9613375;chr2L_9613433_9613458 68.75 56.25 63.64 69.23 53.85 38.46 58.82 68.00 64.00 72.73 NA 55.56 87.50 87.50 53.85 65.38 60.00 NA 75.00 47.37 45.45 82.61 73.33 80.00 63.64 50.00 69.23 NA 90.91 84.62 57.69 68.42 68.75 70.83 100.00 86.67 NA 66.67 91.67 61.11 87.88 66.67 57.14 60.00 76.00 78.05 81.82 75.00 52.38 NA 80.95 NA 90.91 94.12 56.25 66.67 73.33 78.12 N alternative_donor I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545767_17545850;chr2R_17545615_17545850;chr2R_17545781_17545850;chr2R_17545686_17545850;chr2R_17545690_17545850 chr2R_17545799_17545850 chr2R_17545851_17545985;chr2R_17545613_17545614 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG31522,I_chr3R_270285_272146,I_chr3R_270285_272461,I_chr3R_271138_271887,I_chr3R_272255_272359,RI_chr3R_273677_279264 chr3R - chr3R_270285_271887;chr3R_270285_272146 chr3R_270285_271053;chr3R_271138_271887,chr3R_271138_272146 chr3R_271054_271137 chr3R_270228_270284;chr3R_272147_272246 93.75 95.65 94.74 87.10 94.44 100.00 95.24 97.62 93.02 75.00 100.00 96.00 90.00 93.75 81.82 94.12 100.00 100.00 93.75 90.91 90.91 65.00 85.29 96.15 87.50 93.75 96.43 87.50 NA 100.00 90.00 72.73 92.86 97.50 90.00 92.31 93.33 95.83 96.55 96.77 88.89 88.64 100.00 93.55 75.00 100.00 100.00 90.00 90.48 89.47 96.55 92.31 100.00 94.44 85.71 94.74 96.30 87.50 K intron_retention RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522912_523323 chrX_522911_522912;chrX_523323_523324 chrX_522849_522911;chrX_523324_523351 82.35 76.19 78.57 87.50 100.00 85.71 95.15 88.89 92.68 77.78 NA 88.00 87.50 90.00 66.67 73.68 NA NA 70.00 87.50 NA 100.00 75.00 78.26 95.45 93.33 82.61 87.50 60.87 87.50 NA 83.33 NA 82.35 92.31 69.23 76.92 80.95 88.24 79.31 86.21 86.67 NA 71.43 75.00 81.82 65.38 92.31 88.24 69.23 73.08 94.44 81.82 65.00 NA 66.67 71.88 81.82 K jcn_only_AD Mct1 chrX + chrX_2092973_2093852 chrX_2092977_2093852 chrX_2093853_2093972;chrX_2092665_2092972 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA 100.00 NA 95.65 100.00 95.65 NA 100.00 100.00 NA NA NA 95.00 NA 100.00 NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 100.00 K intron_retention Vha16,I_chr2R_2515427_2515540,I_chr2R_2515427_2515681,noncoding_4636,I_chr2R_2519646_2520298 chr2R - chr2R_2515427_2519531 chr2R_2515426_2515427;chr2R_2519531_2519532 chr2R_2515377_2515426;chr2R_2519532_2519645 0.00 0.00 0.19 0.21 0.00 0.22 0.43 0.00 0.25 0.00 0.00 0.12 0.00 0.26 0.00 0.25 0.14 0.00 0.00 0.23 0.13 0.31 0.07 0.00 0.27 0.00 0.28 0.42 0.28 0.00 0.22 0.00 0.11 0.21 0.00 0.00 0.00 0.09 0.00 0.14 0.00 0.10 0.00 0.00 0.00 0.00 0.25 0.12 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.15 K intron_retention Nhe1,I_chr2L_105456_106437,CRE_chr2L_105910_105964,F_chr2L_105910_105968,I_chr2L_105916_106437 chr2L - chr2L_105456_105511 chr2L_105455_105456;chr2L_105511_105512 chr2L_105391_105455;chr2L_105512_105915 0.00 0.00 NA 0.00 NA NA 6.67 0.00 3.70 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.45 NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 K intron_retention Csk,I_chr3R_7463337_7463512,I_chr3R_7468928_7472509 chr3R - chr3R_7461967_7462050 chr3R_7461966_7461967;chr3R_7462050_7462051 chr3R_7461898_7461966;chr3R_7462051_7462126 100.00 100.00 98.75 99.07 100.00 100.00 100.00 100.00 99.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.21 98.15 100.00 100.00 100.00 100.00 98.63 99.17 100.00 98.61 98.95 100.00 97.92 99.25 100.00 98.98 100.00 99.32 100.00 100.00 99.16 98.55 100.00 100.00 100.00 100.00 100.00 98.81 98.82 100.00 100.00 99.15 98.28 98.21 100.00 100.00 100.00 100.00 100.00 K intron_retention glob1,I_chr3R_11723738_11727000 chr3R - chr3R_11723738_11726929 chr3R_11723737_11723738;chr3R_11726929_11726930 chr3R_11723638_11723737;chr3R_11726930_11727083 81.25 NA NA 50.00 NA NA 85.71 75.00 61.11 NA NA 88.24 NA 76.92 70.00 80.95 NA NA 77.78 81.25 NA 58.33 NA NA NA 87.50 NA NA NA NA 90.00 66.67 90.91 86.67 88.89 NA NA NA NA 90.00 NA 75.00 60.00 60.00 66.67 91.67 83.33 76.92 95.83 NA NA NA NA NA 81.82 NA 88.89 90.00 K intron_retention CG3967,RI_chr3L_9408567_9410728,RI_chr3L_9412100_9412179 chr3L - chr3L_9412372_9419322 chr3L_9412371_9412372;chr3L_9419322_9419323 chr3L_9412195_9412371;chr3L_9419323_9419777 0.00 NA NA 0.00 NA NA NA 3.57 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA 5.26 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention CG31150,Hmt-1 chr3R - chr3R_11675364_11675421 chr3R_11675363_11675364;chr3R_11675421_11675422 chr3R_11674861_11675363;chr3R_11675422_11675653 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.29 0.00 0.00 0.00 0.42 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.86 0.00 1.94 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 1.48 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5604 chr2L - chr2L_10288210_10288267 chr2L_10288209_10288210;chr2L_10288267_10288268 chr2L_10287991_10288209;chr2L_10288268_10288499 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr2R_4927307_4927362,Ance-4,CG8193 chr2R - chr2R_4930933_4930990 chr2R_4930932_4930933;chr2R_4930990_4930991 chr2R_4930171_4930932;chr2R_4930991_4931086 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.18 0.00 0.32 0.41 0.00 0.00 0.00 0.00 0.00 0.24 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 K alternative_donor RpS15Aa chrX - chrX_13231573_13231635;chrX_13231573_13231639 chrX_13231573_13231643 chrX_13231538_13231572;chrX_13231644_13231706 44.22 NA 44.44 60.00 NA 66.67 25.00 44.00 44.00 NA 66.67 47.37 NA 46.67 62.50 43.75 NA 38.46 33.33 33.33 NA NA NA NA NA 35.00 NA NA 0.00 NA 54.55 NA NA 60.00 NA NA NA NA NA NA 25.00 56.76 50.00 NA NA NA NA NA 40.62 NA NA 25.00 NA NA 47.37 NA 50.00 42.86 K intron_retention CG5792,F_chr2L_12714547_12714695 chr2L - chr2L_12713587_12713649 chr2L_12713586_12713587;chr2L_12713649_12713650 chr2L_12713443_12713586;chr2L_12713650_12714296 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 6.67 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.51 0.00 K alternative_donor CG30389,CEF_chr2R_17041552_17043191,I_chr2R_17044803_17047935 chr2R - chr2R_17041672_17042219 chr2R_17041672_17042048 chr2R_17041640_17041671;chr2R_17042220_17042432 18.52 17.33 19.35 24.32 22.22 41.67 22.68 24.39 19.81 14.46 31.58 52.87 30.77 26.09 33.33 24.24 26.09 31.58 40.00 16.54 23.08 16.47 15.35 14.67 16.67 33.33 15.79 14.89 25.30 18.87 21.88 14.89 13.75 18.52 17.81 9.41 11.31 13.67 13.33 20.56 18.52 17.92 38.46 14.93 16.22 15.28 12.50 31.75 25.00 11.71 17.97 16.67 16.67 8.60 32.00 11.70 16.88 36.84 K intron_retention CG11334,I_chr3R_27287685_27288551,I_chr3R_27287691_27288117,F_chr3R_27287720_27288551,RI_chr3R_27288047_27288117 chr3R - chr3R_27287685_27288551 chr3R_27287684_27287685;chr3R_27288551_27288552 chr3R_27287620_27287684;chr3R_27288552_27288651 90.00 NA 81.82 NA NA NA NA NA 90.00 NA NA 87.50 NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 88.89 91.67 NA NA 87.50 NA NA NA NA 100.00 NA 90.91 NA 100.00 NA NA NA NA NA 90.00 NA K mutually_exclusive PhKgamma,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11592631_11594653,chrX_11595161_11597322 chrX_11592631_11593355,chrX_11593440_11597322 chrX_11594654_11595160 chrX_11593356_11593439 chrX_11592533_11592630;chrX_11597323_11597422 0.00 0.00 3.45 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 1.96 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 1.72 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette myoglianin,RI_chr4_712986_714006,RI_chr4_716066_716482,RI_chr4_716153_716613 chr4 - chr4_712986_714006 chr4_712986_713050;chr4_713470_714006 chr4_713051_713469 chr4_712886_712985;chr4_714007_714106 96.84 97.37 94.85 91.04 96.43 96.15 95.04 95.68 96.30 100.00 96.33 96.39 99.41 95.14 95.80 97.42 97.78 99.09 97.33 95.79 98.00 98.82 96.72 94.00 93.33 93.40 96.94 98.11 95.08 96.39 97.71 98.51 97.10 94.86 97.40 98.39 98.55 98.55 97.30 97.26 98.25 96.84 98.46 97.20 96.55 96.72 98.21 96.08 96.67 100.00 99.20 94.68 93.75 98.51 96.69 98.90 95.88 93.14 K intron_retention CG40228,noncoding_14406,RI_chr3LHet_2190419_2190470 chr3LHet - chr3LHet_2190419_2190470 chr3LHet_2190418_2190419;chr3LHet_2190470_2190471 chr3LHet_2190319_2190418;chr3LHet_2190471_2190570 51.66 50.00 NA 48.00 NA NA 21.57 50.00 56.25 NA NA 50.00 53.33 88.89 NA 72.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 73.33 NA NA NA NA NA NA NA 54.55 NA NA NA NA NA NA 56.25 NA NA 41.67 NA NA NA 36.36 41.67 66.67 K multi_cassette I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499338_1501798 chr3L_1499338_1499771;chr3L_1499880_1500244;chr3L_1500389_1501798 chr3L_1499772_1499879;chr3L_1500245_1500388 chr3L_1499043_1499337;chr3L_1501799_1501892 7.02 4.48 2.00 13.43 2.08 5.56 0.00 11.76 6.67 9.52 14.29 13.98 33.33 5.56 4.17 6.15 5.88 4.44 5.71 5.81 9.09 12.50 10.17 10.71 10.26 2.70 7.02 8.51 4.44 11.11 12.68 6.00 10.81 5.43 8.00 16.22 4.76 5.26 7.69 4.12 7.32 4.95 3.92 9.43 8.77 9.86 11.32 5.49 4.85 10.61 12.99 13.21 2.33 9.09 6.06 12.28 5.88 4.35 K intron_retention CG31689,I_chr2L_2730373_2736310,I_chr2L_2736431_2737036 chr2L + chr2L_2739298_2739361 chr2L_2739297_2739298;chr2L_2739361_2739362 chr2L_2739089_2739297;chr2L_2739362_2739831 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 1.65 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 2.35 0.00 0.00 3.61 9.09 3.70 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 1.11 0.81 0.00 0.00 0.00 1.06 0.00 0.00 2.99 1.28 0.00 2.22 0.00 0.00 K intron_retention Trc8 chr3R - chr3R_25326221_25326440 chr3R_25326220_25326221;chr3R_25326440_25326441 chr3R_25326039_25326220;chr3R_25326441_25326615 17.19 13.73 13.79 20.93 6.45 25.81 3.45 18.92 17.33 15.00 9.38 9.52 18.18 24.00 13.64 0.00 10.71 16.67 12.00 15.49 14.29 16.36 18.67 14.55 20.00 16.00 26.92 26.32 19.51 15.69 7.50 20.00 22.00 10.64 21.43 41.67 17.19 17.50 17.74 17.50 18.18 11.27 15.38 19.15 18.37 20.41 12.24 17.86 16.18 18.00 19.64 19.35 27.78 24.44 16.13 16.67 15.79 12.50 K intron_retention MRP,F_chr2L_12727117_12736035 chr2L + chr2L_12724344_12724764 chr2L_12724343_12724344;chr2L_12724764_12724765 chr2L_12724206_12724343;chr2L_12724765_12724911 9.90 7.80 11.54 17.39 12.09 11.61 8.95 12.59 11.48 7.69 8.24 12.47 10.71 13.37 15.33 16.56 17.31 11.35 14.05 9.90 9.17 11.40 10.36 8.14 8.53 6.58 8.92 9.39 9.57 14.10 6.88 7.43 15.22 11.71 6.61 16.72 10.64 9.93 8.58 8.09 5.18 11.11 9.30 10.06 5.19 4.80 6.61 9.22 12.73 7.48 10.09 10.40 7.74 7.14 11.68 5.03 6.91 7.57 K intron_retention ssp4,RI_chr2R_13409412_13411004,I_chr2R_13409412_13411328,I_chr2R_13409412_13411588,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13410466_13411588 chr2R_13410465_13410466;chr2R_13411588_13411589 chr2R_13410454_13410465;chr2R_13411589_13411688 100.00 100.00 100.00 100.00 100.00 90.00 100.00 94.74 100.00 NA 100.00 95.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 96.88 100.00 100.00 95.00 93.75 100.00 NA 100.00 NA NA 93.33 91.67 NA 100.00 95.45 100.00 100.00 90.91 100.00 100.00 100.00 NA 96.30 92.86 100.00 NA 92.31 100.00 96.00 100.00 100.00 100.00 100.00 NA 80.00 100.00 NA 100.00 89.47 K cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27699822_27784756 chr3R_27699822_27707469;chr3R_27707594_27784756 chr3R_27707470_27707593 chr3R_27699722_27699821;chr3R_27784757_27784846 100.00 100.00 95.45 100.00 100.00 100.00 100.00 97.06 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 94.44 95.45 100.00 K cassette NFAT,RI_chrX_13543535_13546911,I_chrX_13544101_13544542 chrX + chrX_13543535_13546911 chrX_13543535_13543687;chrX_13544101_13546911 chrX_13543688_13544100 chrX_13543435_13543534;chrX_13546912_13546918 100.00 100.00 100.00 100.00 100.00 95.24 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 95.83 94.12 100.00 96.97 96.67 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Spc105R chr3L + chr3L_20798960_20799024 chr3L_20798960_20799021 chr3L_20794645_20798959;chr3L_20799025_20799474 100.00 88.89 100.00 92.86 NA NA 100.00 90.00 100.00 NA NA 100.00 NA NA 88.89 90.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 NA NA 100.00 NA NA 100.00 94.12 100.00 100.00 NA NA NA 100.00 94.74 100.00 100.00 NA 100.00 95.45 94.12 100.00 100.00 100.00 100.00 NA NA 87.50 100.00 90.00 88.89 NA 97.06 K intron_retention CG10082,E_chr2R_17533874_17544072,RI_chr2R_17537544_17537615,I_chr2R_17543813_17543881 chr2R + chr2R_17538298_17539941 chr2R_17538297_17538298;chr2R_17539941_17539942 chr2R_17537812_17538297;chr2R_17539942_17540068 0.00 0.00 2.17 0.00 0.00 0.00 0.00 2.50 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.77 2.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.56 0.00 0.00 0.00 K intron_retention CG4400 chrX - chrX_12803214_12803280 chrX_12803213_12803214;chrX_12803280_12803281 chrX_12802969_12803213;chrX_12803281_12803711 0.00 2.20 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 1.25 0.00 0.00 0.00 1.40 1.10 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 1.09 K intron_retention scny,I_chr3L_5763034_5768288 chr3L + chr3L_5767947_5768288 chr3L_5767946_5767947;chr3L_5768288_5768289 chr3L_5767514_5767946;chr3L_5768289_5768388 54.55 NA NA NA NA NA NA NA 63.64 NA NA 54.55 NA NA NA NA NA NA NA 60.00 NA 71.43 NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA 54.55 NA 50.00 43.75 NA 46.15 NA NA NA 38.46 NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,RI_chr2R_20289332_20289739,I_chr2R_20289332_20289846,I_chr2R_20289332_20290093 chr2R - chr2R_20289332_20290093 chr2R_20289331_20289332;chr2R_20290093_20290094 chr2R_20289232_20289331;chr2R_20290094_20290193 100.00 92.86 100.00 93.10 100.00 NA 100.00 97.06 100.00 87.50 100.00 97.22 100.00 93.75 94.12 100.00 94.12 100.00 100.00 97.37 100.00 95.00 100.00 87.50 100.00 100.00 100.00 100.00 91.67 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 94.44 100.00 100.00 92.31 90.91 NA 100.00 93.33 NA 100.00 NA 100.00 100.00 NA NA 95.45 NA NA 91.67 K jcn_only_AA CG10225,CG10221,CG10219 chr3R - chr3R_19578295_19578425 chr3R_19578298_19578425 chr3R_19578426_19578558;chr3R_19576659_19578294 97.06 100.00 100.00 98.53 96.77 NA 94.44 100.00 97.56 NA 95.24 100.00 100.00 97.06 97.73 96.72 97.14 95.83 97.56 95.83 100.00 96.88 96.92 93.94 94.29 100.00 97.92 92.59 90.91 95.83 92.11 NA NA 100.00 100.00 96.97 100.00 100.00 100.00 100.00 NA 98.33 100.00 93.88 95.00 93.33 95.45 NA 95.89 100.00 95.65 100.00 95.00 97.06 94.29 100.00 98.55 95.45 K intron_retention CG32529 chrX + chrX_19761200_19762433 chrX_19761199_19761200;chrX_19762433_19762434 chrX_19760826_19761199;chrX_19762434_19765626 1.73 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 10.71 0.00 0.00 NA NA NA NA NA NA NA NA 3.45 NA NA NA NA NA NA 0.00 NA NA NA 21.43 NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA K intron_retention CG9003,I_chr2R_7531685_7531831,RI_chr2R_7538713_7538828 chr2R - chr2R_7531685_7531743 chr2R_7531684_7531685;chr2R_7531743_7531744 chr2R_7531585_7531684;chr2R_7531744_7531921 24.24 41.18 20.00 46.34 NA 43.75 35.29 24.44 21.05 20.00 41.67 26.47 33.33 17.65 10.34 24.24 21.74 19.05 19.23 34.00 33.33 57.50 18.92 21.43 33.33 39.13 36.36 11.76 31.25 26.32 28.00 NA 25.00 28.21 18.75 50.00 12.50 23.08 24.24 20.00 NA 24.39 14.29 18.18 NA 31.25 13.79 NA 21.05 18.18 23.81 25.00 NA 22.22 27.27 20.00 14.29 NA K jcn_only_AA CaMKII,RI_chr4_1067398_1067889,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1065875_1067889 chr4_1067398_1067889 chr4_1067890_1067989;chr4_1065782_1065874 0.00 2.04 1.59 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.87 0.00 0.00 0.00 1.64 4.08 0.00 1.49 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 K intron_retention mbc,I_chr3R_19615584_19615649,I_chr3R_19625220_19625288 chr3R + chr3R_19626118_19626179 chr3R_19626117_19626118;chr3R_19626179_19626180 chr3R_19625973_19626117;chr3R_19626180_19626941 0.00 0.00 0.00 0.76 0.00 3.92 0.00 1.55 1.37 0.00 0.00 0.88 0.00 0.00 0.00 1.23 0.00 0.00 0.00 1.57 0.00 0.00 0.98 0.73 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 2.61 0.00 0.00 0.00 1.74 0.00 0.00 2.54 2.27 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.00 K intron_retention Fip1 chr3R + chr3R_312254_312317 chr3R_312253_312254;chr3R_312317_312318 chr3R_310723_312253;chr3R_312318_312410 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG31368,F_chr3R_7709658_7714233 chr3R + chr3R_7717514_7717581 chr3R_7717514_7717572 chr3R_7717145_7717513;chr3R_7717582_7718093 100.00 100.00 91.67 100.00 100.00 100.00 94.44 95.24 96.67 88.89 100.00 94.74 100.00 91.67 100.00 93.75 100.00 100.00 91.67 96.30 92.31 100.00 95.24 100.00 88.89 93.75 100.00 88.89 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 96.43 93.33 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 92.31 94.74 100.00 100.00 96.00 100.00 K jcn_only_AD homer chr2L - chr2L_6722431_6723192 chr2L_6722431_6722796 chr2L_6722142_6722430;chr2L_6723193_6723254 0.00 0.00 0.00 0.00 0.00 NA 2.04 0.00 1.35 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 3.33 NA 13.04 0.00 0.00 0.00 0.00 2.27 0.00 0.00 NA 0.00 4.35 3.23 NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA K intron_retention RI_chrX_2622435_2622577,CG2712,RI_chrX_2627170_2627263,RI_chrX_2627204_2627246 chrX + chrX_2627204_2627263 chrX_2627203_2627204;chrX_2627263_2627264 chrX_2627104_2627203;chrX_2627264_2627326 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA 25.00 NA NA NA 0.00 14.29 0.00 13.33 NA NA NA NA NA NA 14.29 NA NA NA NA 7.69 NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 K intron_retention Dgp-1,I_chr2R_14058825_14059758,I_chr2R_14058951_14059942,I_chr2R_14058954_14059942 chr2R - chr2R_14058825_14058897 chr2R_14058824_14058825;chr2R_14058897_14058898 chr2R_14058725_14058824;chr2R_14058898_14058950 3.02 5.13 2.43 2.32 2.86 4.27 3.11 2.54 2.87 2.77 2.30 2.20 2.72 3.73 2.66 3.75 1.27 3.23 2.29 2.75 2.69 3.02 4.81 3.29 7.10 9.09 9.77 16.67 8.37 3.53 1.17 2.33 2.70 2.34 5.68 10.83 3.23 4.90 2.93 3.66 6.00 2.99 3.33 2.68 2.29 4.85 5.41 3.25 2.71 3.26 1.06 3.88 7.50 0.00 2.59 0.98 1.92 6.06 K cassette Pcmt,I_chr3R_1379398_1379947 chr3R - chr3R_1379398_1379850 chr3R_1379398_1379652;chr3R_1379790_1379850 chr3R_1379653_1379789 chr3R_1379298_1379397;chr3R_1379851_1380033 98.36 99.39 99.29 97.12 100.00 97.46 99.32 98.82 98.36 98.52 98.91 97.44 99.01 98.00 99.37 100.00 99.12 99.22 100.00 98.08 99.14 100.00 96.92 97.29 99.02 97.22 99.39 97.37 99.33 95.43 95.10 97.94 99.38 99.45 97.39 97.58 98.65 97.89 98.15 98.58 95.86 97.74 100.00 98.10 99.68 97.05 98.17 94.69 97.57 97.25 97.73 97.44 98.92 96.65 98.67 98.77 98.64 97.35 K intron_retention CG11961 chr2R + chr2R_15249568_15249628 chr2R_15249567_15249568;chr2R_15249628_15249629 chr2R_15249475_15249567;chr2R_15249629_15249940 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG17977,RI_chr2R_3954264_3954689,RI_chr2R_3954799_3955080 chr2R - chr2R_3954799_3954935;chr2R_3954799_3954847 chr2R_3954799_3954912 chr2R_3954775_3954798;chr2R_3954936_3954942 26.79 NA NA NA NA NA 50.00 33.33 25.00 NA NA NA NA NA NA 57.14 NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA 20.00 NA K intron_retention CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21275807_21277196 chr2L_21275806_21275807;chr2L_21277196_21277197 chr2L_21275724_21275806;chr2L_21277197_21277225 10.00 NA NA 33.33 NA NA 27.27 16.67 18.75 10.00 NA 26.32 NA 7.14 NA 20.00 0.00 NA 31.25 NA NA NA 11.11 NA NA NA 6.67 0.00 17.65 13.04 NA NA 0.00 18.18 NA NA 7.14 0.00 NA 4.08 12.50 17.39 NA 0.00 NA 9.09 NA 11.76 13.79 NA 4.35 0.00 NA NA 0.00 5.56 NA 4.00 K cassette eEF1delta chr2L + chr2L_10232660_10233756 chr2L_10232660_10233480;chr2L_10233562_10233756 chr2L_10233481_10233561 chr2L_10232278_10232659;chr2L_10233757_10234539 45.39 53.46 44.83 44.83 50.35 43.94 21.19 54.74 46.97 45.51 90.06 31.35 43.68 42.29 44.92 45.55 52.21 46.02 43.69 43.91 76.40 37.44 45.39 48.36 33.54 25.44 56.91 59.82 23.84 52.13 47.33 49.04 54.87 46.88 43.10 21.58 57.41 53.72 47.49 38.54 30.69 46.06 52.83 50.40 26.56 42.17 50.00 38.51 42.30 56.16 45.21 43.84 39.28 39.19 44.79 50.82 47.89 43.48 K alternative_acceptor CG11665,I_chr2R_1530001_1531096,RI_chr2R_1530001_1531145,I_chr2R_1531244_1531321,RI_chr2R_1535330_1540011 chr2R - chr2R_1531224_1531321 chr2R_1531244_1531321 chr2R_1531322_1531421;chr2R_1531146_1531223 0.00 2.27 2.70 0.00 0.00 0.00 0.00 1.15 1.22 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 1.85 0.00 0.00 3.57 1.89 NA 0.00 1.27 3.45 4.35 0.00 2.70 2.70 0.00 0.00 3.12 2.44 0.00 NA 3.45 0.00 NA 1.37 4.35 0.00 0.00 0.00 0.00 0.00 0.00 3.03 NA K alternative_donor ORMDL chr3L + chr3L_21628870_21629086 chr3L_21628905_21629086 chr3L_21629087_21629299;chr3L_21628718_21628869 8.70 9.43 7.55 15.79 7.81 3.33 7.89 9.30 6.03 10.00 10.20 8.33 3.23 4.44 13.33 11.76 8.93 5.77 9.38 9.17 8.00 8.70 10.87 8.45 0.00 10.00 18.00 18.18 25.00 8.82 5.17 11.11 2.56 7.50 3.23 25.64 9.52 7.69 7.81 5.43 12.90 8.13 3.77 6.98 3.03 7.25 4.17 12.50 6.12 9.26 9.26 14.29 15.91 10.00 6.67 11.11 9.88 8.54 K intron_retention CG6151,noncoding_12788,I_chr3L_15803949_15804163,RI_chr3L_15803949_15805547,I_chr3L_15804255_15804319,I_chr3L_15806727_15808816 chr3L - chr3L_15803949_15804319 chr3L_15803948_15803949;chr3L_15804319_15804320 chr3L_15803849_15803948;chr3L_15804320_15804419 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 17.65 NA NA NA NA 21.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor Snx6,RI_chr2L_8218680_8218853,I_chr2L_8230332_8238998 chr2L - chr2L_8218680_8219115 chr2L_8218680_8218853 chr2L_8218580_8218679;chr2L_8219116_8219215 8.02 5.67 8.99 7.04 7.93 7.56 10.04 8.02 9.40 8.54 10.98 10.65 11.63 12.99 9.09 16.22 10.06 11.67 14.12 8.38 9.15 1.66 3.97 5.82 6.83 8.02 4.68 0.69 7.45 3.57 9.73 8.44 4.12 11.67 5.99 4.00 8.71 5.73 10.26 6.36 7.69 9.35 7.64 4.21 6.94 9.16 3.97 15.00 10.84 4.33 4.44 8.74 2.78 3.36 8.23 5.71 4.98 9.69 K cassette jar,F_chr3R_20084972_20096616 chr3R - chr3R_20079847_20080355 chr3R_20079847_20080125;chr3R_20080171_20080355 chr3R_20080126_20080170 chr3R_20079726_20079846;chr3R_20080356_20080400 7.69 7.69 NA 26.32 NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA 5.56 13.33 NA 7.14 NA NA NA NA NA NA 7.14 NA NA NA NA 15.38 NA 14.29 NA NA K alternative_donor CG14117,F_chr3L_13001961_13002035,RI_chr3L_13001978_13002035 chr3L + chr3L_13001974_13002035 chr3L_13001978_13002035 chr3L_13002036_13002127;chr3L_13001878_13001973 7.14 15.38 NA 0.00 NA NA 7.14 NA 13.33 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 5.56 NA NA NA NA NA 15.38 7.14 NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA 9.52 7.14 NA NA NA NA NA 0.00 NA NA K intron_retention Fis1,I_chr2R_1491917_1492087,I_chr2R_1492154_1492214 chr2R - chr2R_1491518_1491748 chr2R_1491517_1491518;chr2R_1491748_1491749 chr2R_1491405_1491517;chr2R_1491749_1491916 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 1.18 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.02 0.00 0.00 1.37 1.37 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.53 0.93 0.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 K alternative_acceptor fs(1)h,RI_chrX_7949952_7949999,I_chrX_7950171_7952371,I_chrX_7954192_7955240 chrX - chrX_7949927_7949999 chrX_7949952_7949999 chrX_7950000_7950099;chrX_7949852_7949926 2.40 0.00 0.00 2.56 0.00 2.38 2.70 1.04 3.03 3.45 3.70 2.41 3.57 4.17 1.67 1.37 4.35 2.00 1.85 2.94 2.56 4.17 1.72 3.45 4.35 1.92 0.00 2.94 2.70 4.17 1.82 NA 1.41 0.96 2.94 3.92 3.45 0.00 0.00 2.27 0.00 2.75 4.65 1.67 NA 4.35 NA 0.00 2.91 NA 2.38 0.00 0.00 NA 3.39 NA NA 0.00 K jcn_only_AA Hr78,I_chr3L_21490089_21490390,CG33214 chr3L - chr3L_21490008_21490390;chr3L_21489978_21490390;chr3L_21490023_21490390 chr3L_21490089_21490390 chr3L_21490391_21490490;chr3L_21489920_21489977 3.03 NA NA 11.76 NA NA 0.00 2.94 0.00 NA NA NA 5.00 NA NA 3.03 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 7.41 NA NA NA NA NA NA NA 3.70 NA NA NA NA NA NA 0.00 NA NA NA NA NA 4.55 NA NA NA K alternative_donor Fs(2)Ket,I_chr2L_20734991_20735252,I_chr2L_20735091_20735305,I_chr2L_20735170_20735252,I_chr2L_20738976_20749527 chr2L + chr2L_20735170_20735252;chr2L_20735091_20735252 chr2L_20734991_20735252 chr2L_20735253_20735352;chr2L_20734943_20734990 1.56 0.00 0.00 2.50 4.17 0.00 3.70 1.49 1.23 0.00 5.26 3.03 3.45 0.00 2.86 0.00 2.94 7.41 2.50 2.08 0.00 4.35 2.94 0.00 0.00 0.00 6.67 0.00 14.29 5.88 2.94 NA 5.56 1.64 0.00 0.00 0.00 0.00 8.33 4.17 NA 0.00 3.45 4.76 NA 0.00 12.50 0.00 3.12 12.50 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD CG17233,RI_chr3L_20232898_20232962 chr3L - chr3L_20233633_20234944;chr3L_20233633_20234218;chr3L_20233633_20234374 chr3L_20233633_20234418 chr3L_20232963_20233632;chr3L_20234945_20234989 93.42 89.66 83.87 91.67 95.45 83.87 90.24 78.69 95.65 93.33 95.00 90.00 97.50 89.29 92.86 86.36 92.86 100.00 90.32 84.55 95.83 70.27 93.33 90.62 93.94 96.30 100.00 81.82 95.56 100.00 97.67 92.50 94.52 77.05 85.71 95.12 93.75 96.88 94.59 93.55 98.21 93.42 100.00 97.06 89.29 97.78 100.00 97.83 82.89 86.96 89.47 NA 93.75 NA 97.30 83.87 82.61 98.15 K intron_retention l(1)G0196,I_chrX_21890195_21895316,I_chrX_21900456_21904601 chrX + chrX_21896112_21897314 chrX_21896111_21896112;chrX_21897314_21897315 chrX_21895869_21896111;chrX_21897315_21897323 35.00 NA 20.00 32.00 NA 33.33 57.14 30.00 37.50 NA NA 50.00 NA NA 41.67 34.78 NA NA 63.64 31.03 NA 37.50 46.67 NA 33.33 21.43 NA NA 20.00 27.78 47.06 NA 35.00 41.67 54.55 58.82 NA NA NA 50.00 47.06 29.17 NA 30.00 NA 35.29 NA 21.21 24.14 NA NA NA NA NA 42.11 NA NA 26.67 K cassette RI_chrX_11473566_11473702,roX2,noncoding_23149,I_chrX_11475074_11475402 chrX + chrX_11473158_11473702 chrX_11473158_11473384;chrX_11473433_11473702 chrX_11473385_11473432 chrX_11473148_11473157;chrX_11473703_11473726 11.11 NA NA 5.56 NA NA NA 9.09 15.00 NA NA 10.71 NA NA 18.75 10.00 NA NA 16.67 11.11 NA NA NA NA NA NA NA NA NA NA 10.00 NA NA 11.54 NA NA NA NA NA 10.34 NA 22.22 14.29 NA NA 28.57 NA 12.50 10.00 NA NA NA NA NA 10.53 NA NA 11.11 K alternative_acceptor Acon,I_chr2L_21168805_21168878,I_chr2L_21168805_21170166 chr2L + chr2L_21168805_21170190;chr2L_21168805_21170166 chr2L_21168805_21168878 chr2L_21168705_21168804;chr2L_21170191_21170266 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.38 0.29 0.00 0.00 0.24 0.00 0.00 0.00 0.34 0.96 0.59 0.00 0.17 0.72 0.54 0.00 0.43 0.62 0.00 0.55 0.43 0.54 0.00 0.38 0.00 0.00 0.30 0.69 0.00 0.00 0.00 0.35 0.32 0.00 0.28 0.70 0.35 0.00 0.51 0.00 0.39 0.48 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.51 K jcn_only_AD RpS27,I_chr3R_21072390_21072647,I_chr3R_21072390_21072710,I_chr3R_21072390_21073049 chr3R - chr3R_21072390_21073154 chr3R_21072390_21072710 chr3R_21072290_21072389;chr3R_21073155_21073223 0.00 0.00 0.00 0.02 0.04 0.03 0.01 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.02 0.00 0.00 0.03 0.00 0.12 0.30 0.00 0.14 0.05 0.19 0.00 0.58 0.00 0.07 0.16 0.00 0.01 0.00 0.00 0.04 0.00 0.13 0.06 0.23 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.06 0.00 0.00 0.10 0.00 0.75 0.00 0.12 0.03 0.03 K cassette CG3714,I_chr2L_4190825_4191774,I_chr2L_4191897_4192115,I_chr2L_4191897_4192632,I_chr2L_4192178_4192632,I_chr2L_4195905_4196470,RI_chr2L_4196780_4197951 chr2L - chr2L_4190825_4192632 chr2L_4190825_4191774;chr2L_4191897_4192632 chr2L_4191775_4191896 chr2L_4190725_4190824;chr2L_4192633_4192688 66.67 NA 38.46 90.00 NA NA 22.22 58.33 81.82 NA 30.00 50.00 NA NA 45.45 80.00 NA NA 44.44 80.00 45.45 44.12 61.11 87.50 NA NA 72.73 63.64 31.03 63.64 93.75 87.50 90.91 63.64 71.43 66.67 85.71 55.56 60.00 57.14 81.82 54.55 NA 70.59 70.00 76.47 57.14 88.24 50.00 76.92 73.33 75.00 NA 85.71 72.73 50.00 NA NA K alternative_last_exon vn chr3L - chr3L_5806575_5809746 chr3L_5807967_5809746 chr3L_5806434_5806574 chr3L_5806791_5807966 chr3L_5809747_5809800 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention rogdi chr3L + chr3L_17045033_17045102 chr3L_17045032_17045033;chr3L_17045102_17045103 chr3L_17044961_17045032;chr3L_17045103_17045234 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor cic chr3R + chr3R_16126135_16126356 chr3R_16126135_16126329 chr3R_16125939_16126134;chr3R_16126357_16126761 77.95 75.00 78.69 81.34 75.00 84.38 75.79 74.23 79.52 84.44 83.33 78.21 85.19 74.24 74.71 76.62 67.31 76.39 81.36 72.53 87.50 63.04 73.13 77.78 80.72 80.77 84.34 82.09 72.95 76.12 74.65 72.00 82.50 75.44 78.95 92.23 74.47 70.15 74.22 78.05 84.44 77.70 83.33 64.66 86.11 75.64 79.27 77.95 74.15 79.66 80.67 71.43 71.88 72.60 80.49 84.75 82.61 89.61 K alternative_acceptor Klc,I_chr3L_12741779_12743062,I_chr3L_12741783_12742943,I_chr3L_12741838_12743062 chr3L - chr3L_12741838_12743062;chr3L_12741783_12743062 chr3L_12741779_12743062 chr3L_12743063_12743083;chr3L_12741738_12741778 2.83 2.04 1.54 3.96 2.22 0.00 4.80 1.06 4.19 5.00 3.57 4.44 1.59 1.92 1.96 6.73 5.66 4.26 4.55 4.48 1.69 1.56 2.99 2.50 5.88 1.92 5.88 0.00 2.94 9.38 3.45 3.85 9.09 1.01 0.00 2.50 0.00 3.03 2.17 2.22 0.00 2.83 2.22 1.72 8.00 1.79 6.25 5.56 5.26 4.44 1.67 2.13 0.00 3.85 0.00 1.96 4.76 3.03 K alternative_acceptor CG6043,I_chr2L_13267973_13268086 chr2L + chr2L_13274377_13274651;chr2L_13274377_13274642 chr2L_13274377_13274690 chr2L_13274310_13274376;chr2L_13274691_13274770 50.00 NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 84.62 25.00 NA NA NA NA NA 55.56 NA NA NA 36.36 NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA 40.00 NA 69.23 66.67 NA NA NA NA NA NA NA K intron_retention sprt,CG30022 chr2R - chr2R_7274821_7274876 chr2R_7274820_7274821;chr2R_7274876_7274877 chr2R_7274707_7274820;chr2R_7274877_7274995 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.45 0.00 2.13 1.00 0.00 0.00 0.00 0.00 0.00 0.00 8.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA EF_chr2R_8548702_8595112,nemy chr2R - chr2R_8561434_8563629;chr2R_8563548_8563629;chr2R_8560845_8563629 chr2R_8561431_8563629 chr2R_8563630_8563736 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor l(2)k14710 chr2R - chr2R_2098331_2099100 chr2R_2098361_2099100 chr2R_2099101_2099649;chr2R_2098233_2098330 100.00 100.00 100.00 95.24 100.00 93.75 100.00 100.00 100.00 NA 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 94.44 100.00 100.00 94.12 100.00 100.00 100.00 94.74 96.00 100.00 93.75 100.00 95.83 100.00 92.86 91.67 92.86 100.00 94.44 100.00 100.00 K intron_retention CG32758 chrX - chrX_5615236_5615299 chrX_5615235_5615236;chrX_5615299_5615300 chrX_5613769_5615235;chrX_5615300_5615729 66.67 68.97 80.00 95.45 75.00 91.67 64.10 61.29 72.58 66.67 78.26 72.73 59.09 70.59 56.25 78.26 75.00 20.00 64.29 63.83 68.18 36.36 62.50 63.33 66.67 66.67 68.18 40.00 54.17 65.22 63.16 70.83 75.71 80.00 60.71 62.86 61.29 77.78 58.82 57.50 66.67 68.89 64.71 39.39 85.19 56.00 48.48 63.33 63.89 72.73 66.67 68.42 57.14 59.09 65.38 69.57 68.97 78.79 K jcn_only_AA ph-d chrX - chrX_2015655_2017014 chrX_2015658_2017014 chrX_2017015_2017061;chrX_2015189_2015654 98.98 NA NA 94.59 NA NA 100.00 100.00 97.44 NA NA NA NA 100.00 NA 95.83 NA NA 100.00 88.24 NA 100.00 91.67 NA NA NA NA NA NA 96.15 NA NA 100.00 93.55 NA NA 100.00 NA 90.48 100.00 NA 93.75 NA 100.00 NA NA NA 97.96 96.77 NA 100.00 NA NA NA NA NA NA 100.00 N multi_cassette spin,I_chr2R_12013288_12013847 chr2R + chr2R_12019405_12023531 chr2R_12019405_12019813;chr2R_12020141_12020333;chr2R_12020596_12023531 chr2R_12019814_12020140;chr2R_12020334_12020595 chr2R_12019047_12019404;chr2R_12023532_12023630 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 51.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG1458,I_chr3R_25048492_25048616 chr3R - chr3R_25048492_25048964 chr3R_25048492_25048616 chr3R_25048392_25048491;chr3R_25048965_25049121 0.00 0.00 0.68 0.00 0.00 0.73 0.88 0.00 1.89 0.00 1.79 0.00 1.22 0.00 1.33 0.00 0.00 0.81 0.00 0.69 0.00 0.00 0.00 0.26 0.00 0.00 0.75 0.00 0.87 0.00 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.35 0.00 0.00 0.75 0.00 0.00 0.00 0.60 0.00 0.00 0.56 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention sll chr3R + chr3R_13433781_13433861 chr3R_13433780_13433781;chr3R_13433861_13433862 chr3R_13433655_13433780;chr3R_13433862_13434263 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 10.00 0.00 0.00 0.00 0.00 0.00 2.94 K jcn_only_AA Fkbp13,I_chr2R_17382832_17383162,RI_chr2R_17382832_17384137,I_chr2R_17382852_17384568 chr2R - chr2R_17382832_17384568 chr2R_17382852_17384568 chr2R_17384569_17384668;chr2R_17382752_17382831 0.17 0.15 0.17 0.27 0.94 0.00 0.27 0.14 0.34 0.40 0.35 0.09 0.00 0.00 0.14 0.36 0.00 0.33 0.00 0.14 0.25 0.41 0.42 0.14 0.00 0.19 0.38 0.00 0.30 0.00 0.14 0.23 0.67 0.39 0.00 0.00 0.00 0.00 0.11 0.56 0.85 0.34 0.73 0.00 0.35 0.22 0.10 0.46 0.00 0.27 0.15 0.00 0.29 0.13 0.28 0.15 0.46 0.00 K jcn_only_AA CG42490,RI_chr2L_18666413_18666474,CREI_chr2L_18666629_18666680 chr2L + chr2L_18666629_18666691 chr2L_18666629_18666680 chr2L_18666560_18666628;chr2L_18666692_18666739 28.26 32.26 29.73 NA 42.86 20.59 23.53 19.64 25.37 NA 24.00 25.35 28.12 36.59 23.68 27.66 13.95 31.25 31.82 29.85 36.00 NA 26.09 28.30 NA 25.00 20.45 NA NA 27.27 32.31 24.00 41.38 26.00 45.83 NA 34.00 28.00 30.43 40.91 37.50 14.10 NA 21.74 28.26 34.29 31.11 26.67 30.36 27.03 27.27 38.71 46.15 32.61 38.46 26.79 15.00 41.18 K alternative_donor Arp14D,RE_chrX_16445264_16446372 chrX - chrX_16443182_16443249;chrX_16443182_16443253 chrX_16443182_16443251 chrX_16442302_16443181;chrX_16443254_16443445 45.95 42.22 49.30 49.50 44.23 50.82 43.48 47.22 52.05 45.45 55.56 57.02 29.55 44.29 44.44 45.19 46.55 40.00 38.81 50.93 54.72 41.18 41.67 51.28 NA 34.33 55.56 35.29 52.70 45.95 57.45 49.21 34.09 42.86 51.85 44.83 45.71 54.17 37.04 54.69 58.43 38.58 40.35 NA 52.38 51.30 52.50 40.29 37.78 50.00 55.26 56.41 48.00 47.62 41.38 45.16 43.90 45.83 K intron_retention CG10600,I_chr2L_18836445_18836522,RI_chr2L_18838793_18838882 chr2L - chr2L_18836090_18836153 chr2L_18836089_18836090;chr2L_18836153_18836154 chr2L_18834484_18836089;chr2L_18836154_18836444 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Ark,I_chr2R_12909344_12909416,RI_chr2R_12912984_12913058 chr2R + chr2R_12909296_12909416 chr2R_12909344_12909416 chr2R_12909417_12909516;chr2R_12909244_12909295 3.85 0.00 3.45 3.12 3.85 5.00 7.32 6.25 5.36 NA 0.00 2.17 0.00 3.85 0.00 2.70 0.00 0.00 10.00 2.70 3.57 5.13 4.65 0.00 0.00 4.17 4.76 NA 0.00 0.00 12.50 NA 2.70 2.56 3.12 2.27 7.69 0.00 0.00 9.09 NA 4.76 9.52 3.85 NA 5.56 5.26 6.25 4.76 NA 4.44 8.33 NA NA 7.41 0.00 NA NA K jcn_only_AA Su(var)2-HP2 chr2R - chr2R_10504863_10504932 chr2R_10504866_10504932 chr2R_10504933_10505250;chr2R_10504551_10504862 100.00 100.00 100.00 95.00 100.00 100.00 100.00 96.97 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 97.96 100.00 98.15 97.73 NA 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K multi_cassette dlg1,I_chrX_11290137_11290410,I_chrX_11298230_11299306 chrX + chrX_11290137_11299306 chrX_11290137_11291857;chrX_11291946_11292002;chrX_11292217_11292278;chrX_11292693_11292752;chrX_11292856_11293774;chrX_11293850_11294820;chrX_11294866_11299306 chrX_11291858_11291945;chrX_11292003_11292216;chrX_11292279_11292692;chrX_11292753_11292855;chrX_11293775_11293849;chrX_11294821_11294865 chrX_11290037_11290136;chrX_11299307_11299406 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Ten-m,EI_chr3L_22298865_22299141,I_chr3L_22300015_22300646,I_chr3L_22374182_22399991 chr3L - chr3L_22297630_22298066 chr3L_22297629_22297630;chr3L_22298066_22298067 chr3L_22297346_22297629;chr3L_22298067_22298128 0.00 NA NA 12.50 NA NA 14.29 0.00 0.00 NA NA 4.35 NA NA NA 0.00 NA NA NA 5.56 NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA 0.00 NA NA NA 16.67 NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention I_chr2R_4783150_4783708,Ggamma1,noncoding_5300 chr2R + chr2R_4789055_4789832 chr2R_4789054_4789055;chr2R_4789832_4789833 chr2R_4788986_4789054;chr2R_4789833_4790635 100.00 98.51 100.00 99.12 100.00 100.00 100.00 99.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 99.31 100.00 100.00 100.00 98.98 100.00 100.00 99.28 97.78 100.00 100.00 100.00 100.00 100.00 98.18 100.00 97.30 K intron_retention msn,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2556867_2556941 chr3L_2556866_2556867;chr3L_2556941_2556942 chr3L_2556792_2556866;chr3L_2556942_2557070 1.05 0.70 1.64 1.58 0.28 1.53 1.16 0.76 1.50 0.41 0.00 1.24 0.00 0.95 2.04 1.49 0.62 1.81 1.20 1.53 1.05 0.44 0.81 0.84 0.24 1.09 1.05 3.90 0.80 1.05 0.46 1.33 0.96 1.36 1.29 1.14 0.66 0.86 1.02 0.51 0.00 1.04 1.72 0.43 1.23 1.53 0.78 1.57 1.28 0.99 1.02 0.58 0.71 0.00 1.94 1.07 1.10 1.50 K alternative_donor Glued chr3L + chr3L_13922588_13922750 chr3L_13922642_13922750 chr3L_13922751_13922815;chr3L_13922526_13922587 96.30 85.00 95.65 92.50 100.00 95.65 95.35 91.67 98.28 100.00 93.75 97.87 100.00 95.00 100.00 97.50 80.00 92.86 100.00 100.00 93.75 96.97 93.33 96.55 96.30 100.00 84.62 96.30 93.75 100.00 89.47 100.00 95.45 96.67 95.83 91.30 95.12 100.00 95.83 93.75 92.31 97.78 90.91 96.30 100.00 100.00 100.00 96.30 97.83 91.67 96.97 96.88 100.00 81.82 89.47 85.71 100.00 94.44 K intron_retention CG6294,CG6299,I_chrX_15359667_15359763 chrX + chrX_15360158_15360251 chrX_15360157_15360158;chrX_15360251_15360252 chrX_15360102_15360157;chrX_15360252_15360509 4.60 4.60 6.67 3.92 3.12 8.51 7.69 4.30 6.06 0.00 8.06 5.49 2.56 6.56 5.77 10.17 4.84 3.12 6.00 3.82 8.00 3.92 5.26 0.00 0.00 4.76 5.77 0.00 3.12 2.33 0.00 7.14 3.92 7.25 0.00 7.69 2.15 0.00 3.80 2.50 13.04 6.03 6.12 2.04 2.00 6.52 3.17 8.00 9.26 0.00 5.00 5.00 0.00 0.00 4.76 1.35 3.66 5.41 K jcn_only_AD mRpL33,I_chrX_4216068_4216134 chrX - chrX_4216068_4216134 chrX_4216068_4216123 chrX_4215999_4216067;chrX_4216135_4216200 98.20 99.04 98.77 98.55 100.00 97.50 97.60 98.00 99.47 95.56 100.00 100.00 100.00 97.67 98.85 98.39 98.48 97.56 98.17 98.52 100.00 NA 98.37 98.85 98.02 97.52 99.25 97.62 96.72 98.00 97.35 98.15 100.00 97.22 100.00 96.15 97.33 96.67 99.30 100.00 100.00 99.30 97.70 99.09 95.74 98.23 100.00 100.00 97.52 97.67 98.28 94.90 98.11 97.54 97.09 99.39 97.84 94.23 K intron_retention MED15 chr2L + chr2L_475852_475915 chr2L_475851_475852;chr2L_475915_475916 chr2L_475233_475851;chr2L_475916_476015 0.00 NA NA 0.00 NA 0.00 7.14 6.67 2.27 NA NA 0.00 0.00 0.00 NA 9.30 NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 7.14 NA 0.00 NA NA 0.00 NA 0.00 NA K cassette CG34123,RI_chr2R_11160894_11162043,I_chr2R_11167854_11168411 chr2R - chr2R_11168549_11169910 chr2R_11168549_11168723;chr2R_11168884_11169910 chr2R_11168724_11168883 chr2R_11168412_11168548;chr2R_11169911_11169983 91.67 93.75 100.00 39.13 92.31 82.35 75.00 87.50 90.48 81.82 77.78 76.47 92.31 92.31 95.24 100.00 81.25 100.00 87.50 91.43 92.86 64.86 86.21 96.88 100.00 95.24 86.67 90.00 88.00 85.71 86.96 100.00 93.55 95.83 86.96 95.65 92.86 91.67 97.30 95.24 90.91 78.57 82.35 91.67 84.21 87.50 94.12 75.86 87.88 92.31 96.30 92.31 92.00 100.00 94.12 84.62 100.00 85.71 K jcn_only_AD CG6178 chr3R + chr3R_19978381_19978811;chr3R_19978271_19978811 chr3R_19978326_19978811 chr3R_19978812_19979489;chr3R_19978101_19978270 95.92 91.67 97.83 96.00 96.55 95.12 87.50 94.29 91.67 100.00 97.06 92.31 100.00 97.96 96.08 97.87 95.45 100.00 86.96 98.88 100.00 100.00 93.18 100.00 95.45 92.50 100.00 100.00 92.86 NA 94.23 96.97 92.31 93.75 92.31 100.00 100.00 92.00 95.65 88.24 100.00 94.44 91.89 NA 82.76 97.06 95.92 91.30 98.63 95.24 100.00 100.00 96.43 91.30 93.18 96.15 93.88 96.36 K intron_retention lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6394546_6419543,I_chr2R_6404486_6419543,R_chr2R_6408775_6419537,I_chr2R_6409616_6419543,I_chr2R_6419625_6419686,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6414480_6414570 chr2R_6414479_6414480;chr2R_6414570_6414571 chr2R_6414414_6414479;chr2R_6414571_6414580 73.33 70.00 73.33 100.00 90.91 66.67 83.33 78.26 82.14 NA 75.00 72.41 84.62 91.67 73.33 85.19 87.50 69.23 66.67 41.27 NA NA 65.00 68.75 66.67 77.78 73.33 81.25 NA 63.64 78.57 NA 33.33 77.78 63.64 72.73 55.00 70.00 38.46 60.00 NA 75.86 80.00 50.00 NA 35.71 NA 53.33 82.61 NA 57.14 90.00 NA NA 73.33 NA NA NA K intron_retention Tif-IA,RI_chr2L_22250854_22257652 chr2L + chr2L_22253922_22257652 chr2L_22253921_22253922;chr2L_22257652_22257653 chr2L_22253746_22253921;chr2L_22257653_22257752 0.00 0.00 0.00 1.71 0.00 0.00 1.23 0.52 0.49 0.00 0.00 0.65 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 1.28 2.44 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 1.67 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ste14 chr3L + chr3L_13011721_13011787 chr3L_13011720_13011721;chr3L_13011787_13011788 chr3L_13011278_13011720;chr3L_13011788_13012159 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 6.25 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG13692,E_chr2L_422193_422242 chr2L + chr2L_422189_422242 chr2L_422193_422242 chr2L_422243_422342;chr2L_422093_422188 2.98 0.00 NA NA NA NA 0.00 NA 6.25 NA NA 7.32 NA NA NA 0.00 NA NA NA 5.26 NA NA NA 2.63 NA NA NA NA 0.00 4.55 NA 3.85 5.00 NA NA NA 7.32 0.00 0.00 1.92 NA 0.00 NA 3.57 9.38 4.00 0.00 0.00 5.56 5.00 2.04 0.00 3.33 0.00 NA 7.14 6.02 1.64 K intron_retention alphaTub85E chr3R - chr3R_5557873_5558000 chr3R_5557872_5557873;chr3R_5558000_5558001 chr3R_5556905_5557872;chr3R_5558001_5558525 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.12 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 2.22 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 1.67 K intron_retention Pi3K92E chr3R - chr3R_16455598_16455660 chr3R_16455597_16455598;chr3R_16455660_16455661 chr3R_16454694_16455597;chr3R_16455661_16455780 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.92 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 4.65 0.00 0.00 2.67 1.67 0.00 0.00 0.00 0.00 0.00 0.00 1.10 K alternative_last_exon Sin3A,I_chr2R_8465791_8466633,I_chr2R_8473578_8480185,RI_chr2R_8479951_8480233 chr2R - chr2R_8465791_8466633;chr2R_8465159_8466633,chr2R_8465215_8466633 chr2R_8466057_8466633 chr2R_8464959_8465158 chr2R_8465875_8466056 chr2R_8466634_8466733 44.44 NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA 44.44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention SpdS,I_chr3R_5457577_5457950 chr3R + chr3R_5457577_5458098 chr3R_5457576_5457577;chr3R_5458098_5458099 chr3R_5457477_5457576;chr3R_5458099_5458909 0.00 NA 0.00 2.94 0.00 0.00 0.00 3.33 5.26 0.00 NA 6.67 0.00 0.00 0.00 0.00 4.76 NA 0.00 0.00 NA 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 3.57 NA 1.72 0.00 0.00 0.00 0.00 0.00 0.00 2.22 4.65 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 K jcn_only_AD CG33558,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,EI_chr2R_2820947_2821570,CREI_chr2R_2832933_2850384 chr2R - chr2R_2817876_2818978;chr2R_2817876_2819347 chr2R_2817876_2818567 chr2R_2817851_2817875;chr2R_2819348_2819447 7.31 15.00 NA 0.00 NA NA NA NA 0.00 NA NA 12.20 NA NA NA NA NA NA NA 5.56 NA NA 11.59 10.64 40.00 NA NA NA 10.00 NA NA 4.17 10.53 4.55 NA 15.00 4.55 4.35 10.81 2.13 4.35 2.94 NA 18.18 16.67 4.44 0.00 6.06 NA 12.50 14.29 17.39 4.35 14.81 NA 8.57 0.00 0.00 K intron_retention Lig4 chrX - chrX_13560197_13560258 chrX_13560196_13560197;chrX_13560258_13560259 chrX_13557736_13560196;chrX_13560259_13561169 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 0.00 K intron_retention Ac78C,F_chr3L_21141024_21153737 chr3L - chr3L_21130321_21130457 chr3L_21130320_21130321;chr3L_21130457_21130458 chr3L_21129849_21130320;chr3L_21130458_21130603 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 K mutually_exclusive CG1674,F_chr4_252231_252560,I_chr4_253475_257020,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_252604_254890,chr4_254972_257020 chr4_252604_252904,chr4_253475_257020 chr4_254891_254971 chr4_252905_253474 chr4_252584_252603;chr4_257021_257101 7.14 9.09 9.09 7.14 0.00 0.00 9.52 3.03 6.67 NA 20.00 5.88 8.33 5.56 7.69 5.56 0.00 0.00 6.25 5.00 16.67 20.00 0.00 0.00 12.50 0.00 14.29 NA NA 12.50 4.17 NA 33.33 2.63 12.50 NA 0.00 16.67 16.67 7.69 NA 3.70 7.69 0.00 NA 14.29 0.00 16.67 6.06 12.50 0.00 11.11 NA 0.00 0.00 14.29 12.50 10.00 K intron_retention mRpL3 chrX + chrX_15656155_15656207 chrX_15656154_15656155;chrX_15656207_15656208 chrX_15655631_15656154;chrX_15656208_15656707 0.00 0.95 0.00 1.94 0.00 0.00 1.15 0.00 2.45 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 2.44 1.59 1.28 2.60 0.00 0.00 0.83 3.28 0.00 2.44 0.00 0.00 0.00 2.33 0.00 0.00 1.98 0.00 0.00 0.00 0.88 0.00 0.00 0.00 2.48 1.61 0.00 0.00 0.00 0.86 0.00 1.49 0.00 1.38 0.00 0.00 1.68 1.09 0.00 2.13 0.00 N multi_cassette CG12065,CE_chrX_8469528_8477573 chrX + chrX_8478609_8481290 chrX_8478609_8479842;chrX_8479952_8480018;chrX_8480279_8480584;chrX_8480642_8481290 chrX_8479843_8479951;chrX_8480019_8480278;chrX_8480585_8480641 chrX_8478489_8478608;chrX_8481291_8481558 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 89.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG18011 chr2R + chr2R_6033139_6033201 chr2R_6033138_6033139;chr2R_6033201_6033202 chr2R_6032918_6033138;chr2R_6033202_6033475 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 NA 100.00 100.00 100.00 100.00 N intron_retention CG32016,I_chr4_972691_972763,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_962905_964367 chr4_962904_962905;chr4_964367_964368 chr4_962836_962904;chr4_964368_964401 100.00 100.00 58.82 100.00 100.00 NA 76.67 76.67 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG42593,F_chrX_7841357_7841447 chrX + chrX_7844331_7844396 chrX_7844331_7844393 chrX_7841448_7844330;chrX_7844397_7844817 82.02 80.00 80.95 82.61 85.00 83.33 74.07 86.67 79.25 87.50 88.24 76.92 76.19 76.47 86.36 90.48 89.47 90.91 90.00 82.22 92.31 77.78 79.41 80.00 91.67 84.21 85.19 92.86 81.82 71.43 60.87 66.67 85.71 89.29 75.00 80.00 78.26 65.00 84.62 83.33 NA 69.44 81.25 80.95 90.00 78.95 73.33 NA 81.08 84.21 76.67 90.00 70.00 90.00 90.00 77.78 82.35 NA K intron_retention Spn5,CG6687 chr3R - chr3R_11030273_11032070 chr3R_11030272_11030273;chr3R_11032070_11032071 chr3R_11029272_11030272;chr3R_11032071_11032377 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.59 0.24 0.56 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.35 0.64 0.75 0.00 0.00 0.37 0.00 0.00 0.40 0.84 0.00 0.84 0.74 0.45 0.00 0.00 0.00 0.00 0.00 0.35 0.34 0.00 0.28 0.00 0.00 0.37 0.75 0.00 0.63 0.39 0.38 0.18 0.57 0.00 0.00 0.00 0.00 0.20 0.15 K intron_retention CG1513,I_chr2R_5778649_5778739 chr2R - chr2R_5772407_5772467 chr2R_5772406_5772407;chr2R_5772467_5772468 chr2R_5772271_5772406;chr2R_5772468_5772642 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 9.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG17471,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1216219_1216285 chr4_1216223_1216285 chr4_1216286_1216354;chr4_1216212_1216218 94.28 85.71 100.00 94.12 92.86 89.47 97.96 93.44 96.30 NA 100.00 96.00 93.55 96.55 95.83 96.77 96.15 100.00 100.00 92.68 87.50 88.89 94.12 100.00 100.00 94.44 100.00 NA NA 80.00 85.71 90.00 87.50 98.18 100.00 81.82 NA NA 90.91 95.00 100.00 98.00 92.86 93.33 NA 94.44 100.00 92.31 93.44 100.00 100.00 93.33 NA 93.33 97.06 93.75 94.12 85.00 K intron_retention CG13760 chrX - chrX_2478582_2478699 chrX_2478581_2478582;chrX_2478699_2478700 chrX_2478496_2478581;chrX_2478700_2478968 8.33 10.71 16.67 8.51 4.55 8.00 10.81 8.33 6.10 10.34 7.14 10.53 6.67 0.00 4.08 8.00 9.09 7.41 12.00 10.47 3.70 5.00 8.77 7.27 8.00 13.33 9.09 13.64 27.27 4.44 12.12 6.25 2.27 8.70 0.00 0.00 4.94 10.53 7.14 15.56 9.09 10.94 20.00 16.67 4.65 5.56 10.26 0.00 13.64 10.81 6.98 0.00 18.75 6.67 10.81 0.00 13.89 0.00 K cassette Nipped-B,I_chr2R_580301_580515,I_chr2R_580453_580515,I_chr2R_580989_582555,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_580301_580515 chr2R_580301_580367;chr2R_580456_580515 chr2R_580368_580455 chr2R_580236_580300;chr2R_580516_580582 96.30 100.00 96.30 97.37 100.00 95.00 93.98 96.67 98.25 100.00 88.89 98.00 96.88 100.00 96.00 97.96 100.00 94.74 89.19 89.80 100.00 96.15 95.45 100.00 91.67 95.00 95.45 75.00 100.00 100.00 98.04 95.45 95.65 96.55 95.24 96.55 100.00 100.00 100.00 100.00 90.62 98.15 96.30 100.00 91.18 95.45 100.00 94.12 94.92 93.75 92.31 90.91 88.89 100.00 100.00 91.67 92.00 98.31 K jcn_only_AD pan chr4 + chr4_103373_106337 chr4_103377_106337 chr4_106338_106425;chr4_103264_103372 1.82 4.08 1.54 3.94 2.17 5.66 2.56 0.77 1.63 6.82 2.13 4.30 2.17 5.56 1.82 1.12 2.99 0.00 0.00 1.53 3.39 0.00 1.14 1.82 2.63 0.00 0.00 3.45 0.00 0.00 6.06 NA 0.00 4.04 2.94 5.71 1.28 1.79 0.00 1.96 NA 1.75 2.00 0.00 NA NA 0.00 NA 1.87 NA 4.17 0.00 NA NA 0.00 NA NA NA N cassette CG17273,I_chr3R_16652066_16655997 chr3R - chr3R_16651716_16653701 chr3R_16651716_16651785;chr3R_16652066_16653701 chr3R_16651786_16652065 chr3R_16651355_16651715;chr3R_16653702_16653801 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.52 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette CaMKI,I_chr4_466377_467256,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,RI_chr4_467374_467424,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_466592_467446;chr4_466858_467446;chr4_466798_467446 chr4_466798_467301,chr4_466592_467301,chr4_466858_467301;chr4_467378_467446 chr4_467302_467377 chr4_466585_466591;chr4_467447_467481 87.50 NA NA NA NA NA 90.00 88.89 92.86 NA NA 83.33 85.71 85.71 NA 85.71 NA NA 85.71 84.62 NA NA NA NA NA NA NA NA NA NA 88.89 NA NA 90.91 NA NA NA NA NA 87.50 NA 88.89 87.50 NA NA NA NA NA 86.67 NA NA NA NA NA 87.50 NA 83.33 NA K intron_retention CG6701,RI_chr2R_9866395_9866446,RI_chr2R_9866896_9867532 chr2R - chr2R_9865355_9866446 chr2R_9865354_9865355;chr2R_9866446_9866447 chr2R_9865150_9865354;chr2R_9866447_9866546 1.48 0.00 2.24 3.37 0.71 2.26 1.77 1.61 2.57 2.90 0.90 2.62 2.14 1.45 2.52 3.70 1.65 1.48 4.58 2.32 2.80 1.69 1.59 0.94 0.00 0.00 3.60 2.44 1.00 0.00 1.32 0.00 0.91 1.43 5.88 2.60 1.54 0.00 0.81 3.90 0.00 1.77 0.00 1.57 0.00 0.00 0.00 0.76 2.99 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 2.70 N jcn_only_AD CG32529 chrX + chrX_19795522_19795900;chrX_19795687_19795900 chrX_19795641_19795900 chrX_19795901_19798251;chrX_19794649_19795521 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG5381,I_chr2L_10319077_10319133,RI_chr2L_10320054_10321505 chr2L - chr2L_10319077_10319133 chr2L_10319077_10319130 chr2L_10319011_10319076;chr2L_10319134_10319195 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 98.00 NA 100.00 100.00 NA 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 NA NA NA NA NA 92.86 96.00 NA 98.21 100.00 96.15 95.24 NA NA NA 97.56 95.45 100.00 NA 100.00 100.00 NA NA 96.88 100.00 NA NA NA NA NA 100.00 90.00 100.00 98.33 K alternative_donor pst,I_chr3L_7352698_7352777 chr3L - chr3L_7351881_7351959 chr3L_7351881_7351950 chr3L_7351791_7351880;chr3L_7351960_7352154 100.00 NA NA 100.00 NA 100.00 91.67 NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA 91.67 100.00 100.00 NA NA NA 100.00 100.00 NA NA NA NA 100.00 NA NA 100.00 NA 100.00 90.00 NA 100.00 NA NA NA NA 90.91 NA 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 100.00 K intron_retention CG5290 chr3L - chr3L_17905297_17905347 chr3L_17905296_17905297;chr3L_17905347_17905348 chr3L_17904926_17905296;chr3L_17905348_17905657 0.00 NA 0.00 5.88 0.00 0.00 0.00 3.23 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 6.25 0.00 0.00 4.00 NA NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.90 NA 0.00 0.00 0.00 NA 7.69 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 K alternative_donor jim,I_chr3L_22791582_22791898 chr3L - chr3L_22791579_22791901 chr3L_22791579_22791898 chr3L_22791482_22791578;chr3L_22791902_22791998 78.32 73.91 75.00 75.51 71.43 66.67 84.00 71.88 76.56 68.42 88.89 81.03 77.78 79.17 80.00 72.00 66.67 78.95 89.47 73.61 84.21 78.18 80.43 84.85 84.85 68.18 72.41 71.43 81.82 93.75 78.95 66.67 63.64 77.42 95.00 86.21 78.46 79.41 81.03 75.61 NA 75.00 76.47 83.33 61.90 81.82 81.82 80.95 80.00 85.00 75.00 67.86 73.68 85.71 75.86 70.00 82.61 81.25 K jcn_only_AD e(y)3,I_chrX_19530503_19530884,I_chrX_19530503_19531405,I_chrX_19531847_19532222 chrX - chrX_19530503_19531650;chrX_19530503_19530884;chrX_19530503_19531405 chrX_19530503_19532222 chrX_19530403_19530502;chrX_19532223_19532322 13.28 6.67 6.25 14.81 13.73 13.56 4.17 13.10 15.53 26.79 21.43 13.04 4.08 8.33 18.18 13.79 13.46 12.50 12.50 10.89 5.88 11.48 16.67 10.94 18.97 7.89 13.56 26.67 24.49 15.38 15.09 8.33 9.26 17.44 14.00 2.00 9.00 20.00 15.49 17.50 15.00 11.34 18.75 5.13 21.74 18.60 17.86 20.83 11.34 4.00 15.49 7.27 11.11 NA 10.61 4.35 12.50 5.26 K alternative_donor Rcd6,I_chr2R_16518342_16520460,I_chr2R_16518620_16518916,RI_chr2R_16520388_16520855 chr2R - chr2R_16518620_16520294;chr2R_16518620_16520855 chr2R_16518620_16518916 chr2R_16518520_16518619;chr2R_16520856_16520918 29.16 NA 0.00 20.00 0.00 NA 33.33 25.00 33.33 NA NA 33.33 50.00 33.33 0.00 33.33 100.00 50.00 0.00 12.50 NA 25.00 50.00 25.00 50.00 33.33 100.00 33.33 33.33 33.33 33.33 NA 0.00 25.00 0.00 100.00 33.33 0.00 NA 20.00 NA 33.33 NA 0.00 0.00 0.00 NA 25.00 20.00 NA NA NA NA NA 33.33 NA NA 0.00 K intron_retention I_chr3R_17177101_17200781,mod(mdg4),RI_chr3R_17183087_17183245,RI_chr3R_17183087_17183726,I_chr3R_17183481_17200781,I_chr3R_17183927_17184513,I_chr3R_17183927_17185306,RI_chr3R_17184319_17184513,I_chr3R_17184319_17185084,I_chr3R_17184319_17185284,noncoding_18168,RI_chr3R_17184792_17185306,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,RI_chr3R_17189607_17189988,I_chr3R_17190098_17190207,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17183087_17200781 chr3R_17183086_17183087;chr3R_17200781_17200782 chr3R_17183072_17183086;chr3R_17200782_17200881 0.00 NA NA 9.52 0.00 NA NA 20.83 5.71 NA 0.00 7.69 NA 0.00 0.00 0.00 NA 11.76 NA 12.50 NA NA 5.00 0.00 NA NA 0.00 NA NA NA 7.69 0.00 0.00 6.25 0.00 NA 0.00 0.00 0.00 3.85 4.76 17.86 14.29 6.67 0.00 0.00 10.00 7.14 17.24 0.00 NA NA NA 0.00 6.67 0.00 NA 0.00 K intron_retention CG3894 chr2R + chr2R_20653248_20653300 chr2R_20653247_20653248;chr2R_20653300_20653301 chr2R_20653112_20653247;chr2R_20653301_20653606 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 7.50 NA 0.00 4.55 0.00 0.00 2.33 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 1.79 4.17 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette CG11299,noncoding_8970,I_chr2R_19602423_19609308,I_chr2R_19619053_19619186 chr2R + chr2R_19601642_19616571 chr2R_19601642_19602188;chr2R_19602423_19609732;chr2R_19610399_19616571 chr2R_19602189_19602422;chr2R_19609733_19610398 chr2R_19601628_19601641;chr2R_19616572_19616757 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 90.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG10249,I_chr2R_10790537_10790639 chr2R - chr2R_10791070_10791577 chr2R_10791070_10791135 chr2R_10790641_10791069;chr2R_10791578_10792956 2.78 0.00 0.00 5.56 3.57 4.76 13.64 4.76 2.27 NA 8.70 0.00 4.35 NA 4.17 0.00 NA 3.33 4.17 1.96 0.00 4.76 2.78 2.94 NA NA 0.00 NA NA 8.70 0.00 NA NA 0.00 NA 0.00 2.13 0.00 2.94 6.67 NA 2.38 NA 0.00 NA 0.00 4.17 NA 0.00 0.00 7.41 NA 3.45 0.00 0.00 4.35 5.71 NA K intron_retention Txl chr3L + chr3L_5759817_5759875 chr3L_5759816_5759817;chr3L_5759875_5759876 chr3L_5759563_5759816;chr3L_5759876_5759964 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.12 0.00 0.00 2.11 0.00 2.05 1.39 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG9044 chr2L + chr2L_5949612_5949834 chr2L_5949612_5949827 chr2L_5949486_5949611;chr2L_5949835_5949990 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA 100.00 NA 100.00 NA 100.00 97.30 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 96.30 NA 100.00 NA NA NA 95.24 100.00 NA 100.00 NA NA NA NA NA NA NA K intron_retention RpL7A,snoRNA:Or-CD10,I_chrX_6426579_6427002 chrX - chrX_6425465_6425867 chrX_6425464_6425465;chrX_6425867_6425868 chrX_6424902_6425464;chrX_6425868_6426238 0.06 0.10 0.07 0.07 0.04 0.04 0.11 0.08 0.08 0.00 0.02 0.09 0.05 0.05 0.06 0.09 0.10 0.06 0.11 0.06 0.06 0.17 0.14 0.07 0.16 0.04 0.24 0.91 0.11 0.10 0.09 0.06 0.02 0.05 0.06 0.05 0.01 0.03 0.04 0.08 0.10 0.06 0.02 0.07 0.03 0.06 0.02 0.02 0.11 0.11 0.14 0.20 0.03 0.04 0.03 0.09 0.07 0.03 K intron_retention CG9356 chr3R - chr3R_5228496_5228564 chr3R_5228495_5228496;chr3R_5228564_5228565 chr3R_5228286_5228495;chr3R_5228565_5229866 0.00 0.00 0.00 3.23 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 12.50 5.26 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.55 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon scrib,I_chr3R_22381374_22399575,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22401171_22404442 chr3R_22401171_22402078 chr3R_22404443_22404553 chr3R_22402079_22402897 chr3R_22400887_22401170 21.21 20.00 16.28 11.11 12.12 10.53 10.87 11.86 11.82 21.88 11.43 29.85 6.25 12.90 13.33 17.14 12.82 8.89 16.67 18.07 13.79 7.96 22.11 23.61 25.58 21.21 24.14 42.22 37.29 22.03 18.42 28.00 35.29 18.33 30.23 40.00 21.82 17.24 25.30 25.33 44.00 18.07 15.62 22.03 43.14 29.27 21.43 28.89 17.57 36.11 20.25 14.63 25.00 29.03 17.78 23.81 26.83 23.53 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2389073;chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2395659 chrX_2389074_2389271;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2395660_2395759 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K intron_retention CG3386 chr3L - chr3L_681311_681372 chr3L_681310_681311;chr3L_681372_681373 chr3L_680664_681310;chr3L_681373_681786 0.00 NA NA 19.05 NA NA 6.25 0.00 0.00 NA NA 10.00 6.67 NA 0.00 NA NA NA NA 8.70 NA NA NA NA NA 16.67 NA NA 11.76 0.00 15.79 0.00 0.00 0.00 NA NA NA NA NA 2.70 0.00 4.55 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA 9.09 12.50 NA 0.00 K alternative_acceptor Sp212 chr3R - chr3R_10049251_10049364 chr3R_10049255_10049364 chr3R_10049365_10049530;chr3R_10048474_10049250 95.65 96.00 100.00 97.06 93.33 96.00 95.45 96.88 97.67 90.00 100.00 96.55 100.00 90.00 100.00 96.00 100.00 89.47 95.65 95.00 95.65 88.24 96.30 95.83 92.31 93.75 100.00 NA 92.31 87.50 85.11 87.50 95.24 91.43 95.65 90.91 90.91 95.24 96.00 93.10 92.86 100.00 100.00 100.00 85.00 94.12 100.00 80.00 100.00 96.30 93.55 100.00 86.36 92.86 96.00 94.74 97.96 96.77 K alternative_donor CG2926,I_chr3R_1410401_1410501,I_chr3R_1410558_1410893,I_chr3R_1410841_1410893 chr3R - chr3R_1410401_1410893 chr3R_1410401_1410501 chr3R_1410301_1410400;chr3R_1410894_1410993 0.00 0.00 0.00 12.00 0.00 0.00 2.38 2.13 0.00 7.14 4.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 1.41 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 2.74 8.33 0.00 0.00 0.00 NA 0.00 0.00 7.69 0.00 K jcn_only_AA CG3563,I_chr3R_10615218_10615284,F_chr3R_10620137_10620250 chr3R + chr3R_10614342_10614420 chr3R_10614342_10614417 chr3R_10613779_10614341;chr3R_10614421_10614688 62.96 66.67 69.70 66.67 66.67 62.96 62.96 42.86 62.96 62.96 81.82 65.52 NA 66.67 59.38 80.00 NA 52.00 71.43 67.50 59.26 64.00 63.93 59.32 56.52 50.00 57.89 57.14 57.58 61.36 70.00 NA 69.64 71.15 71.43 62.22 56.00 65.96 54.55 58.18 NA 68.75 50.00 57.14 NA 52.00 70.37 44.83 62.75 69.57 67.39 76.19 60.87 NA 67.31 NA 66.67 NA K intron_retention lva,CG6428 chrX - chrX_3858672_3858733 chrX_3858671_3858672;chrX_3858733_3858734 chrX_3858600_3858671;chrX_3858734_3858984 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.82 0.00 0.00 0.00 0.00 0.00 2.56 9.52 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.27 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA K intron_retention rok,RI_chrX_16526333_16526477 chrX - chrX_16530395_16530460 chrX_16530394_16530395;chrX_16530460_16530461 chrX_16530255_16530394;chrX_16530461_16531396 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10990,noncoding_23570 chrX - chrX_13649095_13649285 chrX_13649094_13649095;chrX_13649285_13649286 chrX_13648863_13649094;chrX_13649286_13649418 100.00 100.00 100.00 100.00 100.00 98.70 100.00 100.00 99.48 100.00 100.00 100.00 99.19 99.08 100.00 100.00 100.00 100.00 99.13 99.35 100.00 100.00 98.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.20 100.00 98.67 98.91 98.59 100.00 97.73 100.00 100.00 99.07 100.00 99.40 100.00 100.00 100.00 100.00 98.18 100.00 99.40 100.00 100.00 100.00 100.00 96.77 99.13 100.00 100.00 97.83 K intron_retention CG17737,I_chr3L_3223527_3224313,I_chr3L_3223943_3224313 chr3L + chr3L_3223415_3223474 chr3L_3223414_3223415;chr3L_3223474_3223475 chr3L_3223400_3223414;chr3L_3223475_3223526 97.30 96.51 93.29 96.23 96.39 95.19 97.53 96.75 97.29 100.00 95.51 95.34 91.77 97.65 95.30 97.12 96.99 93.07 96.30 92.86 93.55 100.00 100.00 98.55 100.00 99.31 100.00 97.30 100.00 100.00 94.61 98.33 96.88 96.39 98.41 100.00 100.00 97.14 100.00 98.21 100.00 95.04 94.34 100.00 97.92 98.44 94.03 90.48 94.60 98.73 98.48 98.15 97.62 100.00 95.81 100.00 98.62 94.94 K intron_retention CD98hc,I_chr3R_3802791_3802855 chr3R - chr3R_3802791_3803283 chr3R_3802790_3802791;chr3R_3803283_3803284 chr3R_3802691_3802790;chr3R_3803284_3803397 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 1.17 0.75 0.00 0.00 1.14 0.00 0.59 0.00 0.00 0.00 0.00 0.46 0.56 0.00 0.00 1.31 2.20 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 1.38 0.00 0.00 1.00 0.00 0.00 0.00 K intron_retention Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24349420_24349501 chr3R_24349419_24349420;chr3R_24349501_24349502 chr3R_24349397_24349419;chr3R_24349502_24349542 32.00 27.78 NA 40.00 38.46 33.33 NA 38.89 39.13 NA NA 30.00 25.00 NA NA NA NA 85.71 NA 34.38 NA 25.00 29.17 19.35 26.67 NA 10.53 NA NA 41.67 NA NA NA 40.00 NA 59.26 20.00 25.00 19.35 45.45 30.77 36.36 NA 32.00 NA 50.00 16.67 NA 53.33 NA 13.79 NA 41.67 NA 54.55 23.08 20.69 NA K multi_cassette CG40263,F_chr2RHet_1265687_1293040,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1265687_1293055 chr2RHet_1265687_1286307;chr2RHet_1286572_1292103;chr2RHet_1292187_1293055 chr2RHet_1286308_1286571;chr2RHet_1292104_1292186 chr2RHet_1265587_1265686;chr2RHet_1293056_1293121 75.00 90.00 57.14 100.00 55.56 87.50 75.00 85.71 78.26 NA NA 73.33 28.57 55.56 62.50 75.00 62.50 75.00 100.00 82.35 NA NA 77.78 66.67 NA 80.00 66.67 NA NA 85.71 92.86 NA NA 68.75 75.00 NA 100.00 80.00 62.50 37.50 NA 75.00 61.54 71.43 NA 60.00 100.00 NA 57.14 NA 66.67 60.00 83.33 85.71 54.55 85.71 75.00 NA K alternative_donor D1,RI_chr3R_5065631_5065691,I_chr3R_5065631_5065695,I_chr3R_5065631_5065697 chr3R - chr3R_5065631_5065697;chr3R_5065631_5065691;chr3R_5065631_5065695 chr3R_5065631_5065767 chr3R_5065531_5065630;chr3R_5065768_5065790 4.84 12.20 1.92 1.47 2.50 1.82 6.90 2.60 5.06 4.35 6.90 3.33 2.22 4.08 1.85 1.77 3.70 0.00 0.00 1.63 7.50 13.79 18.18 5.26 3.85 0.00 3.45 15.00 2.08 14.58 1.56 6.45 10.34 4.88 6.98 2.70 18.52 8.70 12.12 6.48 4.84 1.15 7.14 3.03 12.35 3.74 11.11 4.31 1.77 8.57 7.14 0.00 2.33 11.90 5.63 17.39 10.81 4.90 K intron_retention CG3680,Pka-R1 chr3L + chr3L_20804029_20804080 chr3L_20804028_20804029;chr3L_20804080_20804081 chr3L_20802790_20804028;chr3L_20804081_20804550 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 K intron_retention CG31900,CG31607 chr2L + chr2L_8154053_8154158 chr2L_8154052_8154053;chr2L_8154158_8154159 chr2L_8153835_8154052;chr2L_8154159_8154311 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG9945,CG16742 chr2R + chr2R_16507525_16507584 chr2R_16507524_16507525;chr2R_16507584_16507585 chr2R_16506985_16507524;chr2R_16507585_16507740 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 7.89 3.85 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RpL15 chr3LHet + chr3LHet_2398018_2398127;chr3LHet_2397859_2398127;chr3LHet_2397925_2398127;chr3LHet_2397992_2398127;chr3LHet_2398060_2398127;chr3LHet_2397841_2398127;chr3LHet_2398002_2398127;chr3LHet_2398053_2398127 chr3LHet_2397820_2398127 chr3LHet_2398128_2398454;chr3LHet_2397802_2397819 73.33 52.38 71.74 84.43 80.00 66.67 13.89 85.82 29.69 58.33 77.27 35.71 33.33 33.33 89.06 20.69 87.65 73.33 82.29 54.84 66.67 85.51 40.74 34.78 50.00 84.38 28.57 85.56 80.67 88.75 71.70 94.76 94.95 87.80 78.57 71.43 50.00 53.85 41.67 96.86 88.24 86.24 78.12 96.67 94.15 84.66 33.33 92.74 74.73 13.04 30.43 41.18 98.19 36.84 84.34 46.15 46.67 97.18 K alternative_donor Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16045854 chr3L_16045275_16045854 chr3L_16045855_16045954;chr3L_16045216_16045250 34.62 NA 45.45 47.06 NA NA 23.53 50.00 36.84 NA 14.29 52.63 38.89 47.06 18.18 34.62 30.77 38.46 50.00 29.63 14.29 40.00 45.45 33.33 21.43 53.33 33.33 20.00 30.00 30.00 33.33 NA 22.22 32.00 50.00 45.00 NA 40.00 43.75 22.22 NA 38.46 35.71 25.00 NA 33.33 NA 20.00 33.33 NA 35.29 NA NA NA 47.37 NA NA NA K intron_retention drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9390195 chr2R_9389596_9389597;chr2R_9390195_9390196 chr2R_9389497_9389596;chr2R_9390196_9390251 35.71 30.77 29.51 38.10 33.33 40.43 37.14 46.88 41.09 28.95 31.25 42.55 32.14 37.21 35.71 35.92 37.78 27.14 39.51 28.06 32.14 48.33 35.05 41.67 34.00 36.21 36.36 38.71 29.55 36.49 32.81 33.33 68.25 39.05 33.33 23.86 26.92 33.33 25.00 24.39 60.00 41.38 46.34 44.59 27.59 33.93 32.50 41.67 44.72 37.88 36.49 35.71 25.45 16.39 44.78 29.63 28.87 41.67 K jcn_only_AA CG5664,RI_chr3L_21432841_21432888 chr3L - chr3L_21432832_21432888 chr3L_21432841_21432888 chr3L_21432889_21432988;chr3L_21432741_21432831 20.69 44.00 NA 34.48 NA NA 14.29 12.50 17.50 NA 8.70 26.67 39.13 NA NA 21.43 NA 19.05 23.08 14.89 NA 13.33 20.59 20.00 NA NA 16.67 28.57 26.92 27.27 23.33 NA 22.86 28.12 NA 9.52 27.59 20.00 22.58 22.22 35.00 25.45 NA NA NA 15.38 16.67 NA 15.62 19.35 21.05 NA NA NA 20.69 20.00 11.90 NA K intron_retention X11L,RE_chrX_17497873_17498103 chrX + chrX_17499216_17499270 chrX_17499215_17499216;chrX_17499270_17499271 chrX_17499075_17499215;chrX_17499271_17500133 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 2.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pvr,I_chr2L_8226604_8228082,I_chr2L_8229001_8230124,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8226607_8228082 chr2L_8226606_8226607;chr2L_8228082_8228083 chr2L_8226458_8226606;chr2L_8228083_8228182 7.29 1.68 8.03 6.60 3.80 10.00 5.43 4.96 6.25 10.87 2.88 10.13 12.38 9.21 9.21 7.23 6.12 8.74 7.78 11.33 2.99 12.50 6.62 12.37 11.94 6.48 12.62 6.67 9.52 10.26 7.29 7.69 5.71 3.77 6.90 16.36 11.82 5.21 5.41 9.93 6.25 6.90 4.59 7.29 0.00 5.56 9.80 12.07 8.60 10.87 7.77 5.95 7.27 12.90 6.47 6.94 0.00 8.00 K intron_retention CG10866 chr3L - chr3L_3937394_3937452 chr3L_3937393_3937394;chr3L_3937452_3937453 chr3L_3936597_3937393;chr3L_3937453_3937940 13.33 NA NA NA NA NA NA 13.33 NA 7.69 NA NA 36.36 NA NA NA NA NA NA NA NA 11.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor tho2 chr2L - chr2L_2138159_2139629 chr2L_2138159_2138345 chr2L_2137984_2138158;chr2L_2139630_2139673 30.30 24.53 28.57 28.17 17.65 17.14 47.76 29.49 28.71 50.00 23.08 19.54 45.71 28.95 22.00 80.00 27.78 15.38 31.25 25.29 28.21 20.93 33.33 33.33 39.29 32.43 33.33 32.14 50.00 29.55 32.08 25.00 37.70 31.51 30.56 45.95 23.40 20.00 16.98 38.60 38.46 22.77 30.30 33.33 24.49 40.48 19.35 37.74 34.62 40.00 26.92 37.50 33.33 24.00 26.92 28.89 30.77 39.44 K intron_retention cher,I_chr3R_12943024_12948119 chr3R - chr3R_12936272_12936331 chr3R_12936271_12936272;chr3R_12936331_12936332 chr3R_12935936_12936271;chr3R_12936332_12936476 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor CG18228 chr3R - chr3R_4087273_4087522;chr3R_4087428_4087522 chr3R_4087322_4087522 chr3R_4087523_4087669;chr3R_4087045_4087272 42.86 42.86 34.88 52.00 28.57 48.39 30.77 30.77 30.21 71.43 60.00 28.85 39.62 32.61 48.39 26.72 48.28 45.45 52.00 52.38 45.00 25.00 42.86 34.62 53.85 56.25 34.78 38.10 50.00 42.86 45.28 47.37 53.33 51.43 32.00 25.00 38.46 38.89 46.15 27.59 66.67 47.76 35.00 31.58 50.00 48.78 35.00 50.00 46.15 37.84 36.84 25.93 42.86 45.45 47.37 47.83 40.54 50.00 K cassette stmA chr2R - chr2R_4619317_4619664 chr2R_4619317_4619426;chr2R_4619469_4619664 chr2R_4619427_4619468 chr2R_4619186_4619316;chr2R_4619665_4619910 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 4.65 1.47 1.96 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 1.72 0.00 1.67 0.00 0.00 2.22 0.00 2.33 0.00 2.86 3.23 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chrX_3345099_3416710,CG10803,I_chrX_3380218_3380345 chrX + chrX_3382056_3382107 chrX_3382055_3382056;chrX_3382107_3382108 chrX_3381874_3382055;chrX_3382108_3382630 5.71 0.00 15.00 18.18 NA 5.26 10.26 8.33 15.69 0.00 0.00 8.11 11.11 15.00 0.00 8.33 13.64 NA 17.65 11.76 0.00 0.00 0.00 5.88 0.00 12.50 7.14 NA 7.41 5.26 0.00 0.00 5.71 10.34 0.00 0.00 4.17 0.00 0.00 3.57 6.25 12.90 13.33 0.00 NA 3.85 NA 9.52 10.53 NA 13.79 0.00 14.29 0.00 8.33 5.56 0.00 4.76 K jcn_only_AD su(f),I_chrXHet_77570_78035 chrXHet + chrXHet_77736_78035;chrXHet_77570_78035 chrXHet_77832_78035 chrXHet_78036_78135;chrXHet_77470_77569 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Mi-2,Mtr3 chr3L - chr3L_19906521_19906578 chr3L_19906520_19906521;chr3L_19906578_19906579 chr3L_19905505_19906520;chr3L_19906579_19906793 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 8.70 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA RI_chr3L_20370940_20371530,I_chr3L_20374844_20374891,fbl chr3L + chr3L_20383309_20383373 chr3L_20383309_20383367 chr3L_20383016_20383308;chr3L_20383374_20383493 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Nmda1,R_chr2R_8766216_8766562,I_chr2R_8766652_8766956,I_chr2R_8766728_8766791,I_chr2R_8766728_8767623 chr2R - chr2R_8766216_8766556 chr2R_8766215_8766216;chr2R_8766556_8766557 chr2R_8766116_8766215;chr2R_8766557_8766565 10.87 6.56 8.51 25.71 8.51 0.00 18.97 12.50 11.40 13.64 11.43 9.09 20.59 15.22 11.11 8.59 15.38 6.56 13.24 6.74 8.33 14.49 14.74 11.84 12.28 10.00 6.98 11.90 2.94 9.26 12.24 9.26 11.11 10.99 10.81 7.27 9.09 10.14 9.46 19.15 18.52 11.71 10.42 12.00 10.20 2.00 10.87 11.90 9.00 11.29 9.64 15.62 4.76 4.35 18.75 11.90 7.81 4.65 K intron_retention Tango5,noncoding_22970,I_chrX_10659836_10661185 chrX - chrX_10656468_10657183 chrX_10656467_10656468;chrX_10657183_10657184 chrX_10656442_10656467;chrX_10657184_10657251 50.00 50.00 46.67 53.33 47.06 41.67 76.00 52.38 51.22 NA 41.18 41.67 60.00 NA 58.82 54.55 53.85 43.75 34.62 53.33 46.15 47.62 50.00 66.67 NA 46.15 57.89 78.57 63.64 63.64 43.75 NA NA 50.00 NA NA 38.10 NA 33.33 20.00 NA 50.00 NA NA NA 46.67 75.00 50.00 32.26 33.33 46.67 41.67 NA NA 30.00 NA 50.00 50.00 K intron_retention CG17765,I_chr2R_6368423_6368594 chr2R + chr2R_6368675_6368731 chr2R_6368674_6368675;chr2R_6368731_6368732 chr2R_6368595_6368674;chr2R_6368732_6368795 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.30 0.00 0.00 0.00 0.89 0.00 0.00 0.47 2.40 0.00 0.52 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.30 K alternative_donor l(1)G0196,I_chrX_21900456_21904601 chrX + chrX_21899988_21900142 chrX_21900084_21900142 chrX_21900143_21900455;chrX_21899063_21899987 98.25 98.25 98.41 100.00 98.21 98.33 98.77 99.12 99.32 100.00 100.00 100.00 97.83 100.00 100.00 98.88 98.00 100.00 98.25 97.25 100.00 91.78 98.78 96.92 100.00 98.18 87.84 88.89 91.89 100.00 98.65 96.77 98.67 94.51 97.83 90.62 94.74 97.73 97.30 98.65 92.68 99.17 100.00 97.62 91.84 98.28 97.83 98.78 99.21 98.25 95.24 97.62 96.67 97.30 97.33 100.00 100.00 100.00 K alternative_last_exon spi,I_chr2L_19569183_19577185,I_chr2L_19569227_19572142,I_chr2L_19569227_19577173 chr2L - chr2L_19569227_19572142 chr2L_19571768_19572142 chr2L_19567812_19569226 chr2L_19571572_19571767 chr2L_19572143_19572236 50.00 0.00 33.33 89.47 40.00 25.00 50.00 80.00 57.14 0.00 50.00 71.43 50.00 60.00 40.00 81.82 71.43 40.00 81.82 75.00 66.67 40.00 50.00 60.00 50.00 84.62 33.33 25.00 25.00 40.00 60.00 40.00 75.00 84.62 66.67 60.00 40.00 28.57 14.29 71.43 50.00 86.67 66.67 50.00 50.00 66.67 40.00 66.67 33.33 40.00 50.00 66.67 25.00 42.86 71.43 57.14 25.00 60.00 K intron_retention AP-47,I_chr3R_5385123_5385196,CG9393 chr3R - chr3R_5389059_5389157 chr3R_5389058_5389059;chr3R_5389157_5389158 chr3R_5388912_5389058;chr3R_5389158_5389380 0.00 4.17 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 1.85 2.13 2.15 1.52 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.75 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG12121 chrX - chrX_9124480_9124540 chrX_9124479_9124480;chrX_9124540_9124541 chrX_9124212_9124479;chrX_9124541_9124674 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2602170_2602427 chr3L_2602169_2602170;chr3L_2602427_2602428 chr3L_2601455_2602169;chr3L_2602428_2604279 99.29 99.05 99.32 99.67 99.26 99.39 99.81 99.20 99.38 99.40 99.10 99.32 98.74 99.48 99.54 99.58 99.29 99.16 99.28 99.15 99.40 95.92 99.43 99.08 99.37 99.38 99.22 98.62 98.64 99.29 99.75 98.52 97.19 99.05 99.21 99.69 99.43 99.79 99.29 99.30 99.29 99.09 99.48 99.84 98.27 99.12 99.59 98.88 99.03 98.48 99.56 99.73 98.67 98.92 99.78 98.95 99.06 98.82 K alternative_donor alc chr2R - chr2R_5023211_5023269 chr2R_5023211_5023265 chr2R_5023142_5023210;chr2R_5023270_5023364 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor wun2,I_chr2R_5302867_5303906,I_chr2R_5304606_5304660 chr2R + chr2R_5302867_5304149 chr2R_5302867_5303906 chr2R_5302767_5302866;chr2R_5304150_5304298 3.08 3.42 2.46 1.26 1.22 2.04 3.08 3.65 3.37 0.00 1.19 2.84 0.00 3.54 2.26 4.23 2.35 4.00 2.75 6.04 1.05 5.03 2.58 3.12 3.37 2.44 4.58 1.11 3.92 2.68 9.03 7.46 5.61 3.64 3.10 1.49 1.44 2.21 2.17 4.95 4.00 2.04 2.47 3.33 3.65 4.97 3.65 12.07 2.62 4.55 4.09 2.80 2.70 1.54 3.03 2.86 3.30 5.71 K alternative_donor mld,atl chr3R + chr3R_20456279_20457504 chr3R_20456473_20457504 chr3R_20457505_20457813;chr3R_20456213_20456278 100.00 100.00 100.00 100.00 NA NA 92.31 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 91.67 100.00 88.89 100.00 100.00 NA 100.00 100.00 100.00 NA 85.71 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 83.33 92.31 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 K jcn_only_AD CG2017 chr3R - chr3R_1686127_1687468;chr3R_1686127_1688092;chr3R_1686127_1687510 chr3R_1686127_1687891 chr3R_1685454_1686126;chr3R_1688093_1688097 66.67 72.31 66.67 58.06 74.14 57.14 67.69 54.84 73.28 72.06 60.87 65.91 66.00 70.18 63.33 52.31 69.39 54.55 61.19 70.50 56.90 62.86 70.59 76.47 65.33 67.50 74.22 80.85 62.07 75.21 62.10 63.89 62.99 63.74 58.43 68.22 77.97 76.52 71.55 68.00 63.89 67.69 64.44 64.52 67.11 59.52 66.67 49.54 55.79 56.88 60.66 83.33 68.00 67.42 73.91 78.57 84.13 65.12 K alternative_acceptor step chr2L - chr2L_21741933_21742074 chr2L_21742009_21742074 chr2L_21742075_21742280;chr2L_21741795_21741932 100.00 97.50 97.67 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 97.62 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.59 N intron_retention CG11151 chrX + chrX_13634528_13634710 chrX_13634527_13634528;chrX_13634710_13634711 chrX_13634711_13635156 36.91 NA NA NA NA NA NA NA 57.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG9240,Pis chrX - chrX_15596696_15597216 chrX_15596696_15596845;chrX_15597121_15597216 chrX_15596846_15597120 chrX_15596546_15596695;chrX_15597217_15597351 2.35 2.61 2.35 0.00 1.25 1.32 1.92 3.88 2.17 3.39 8.33 2.86 1.61 3.39 2.56 6.78 3.12 1.28 1.32 2.38 5.71 20.75 1.81 1.25 1.41 0.00 1.75 2.90 1.41 3.61 8.54 2.17 5.56 1.94 3.12 3.85 1.55 1.52 2.16 2.59 2.56 1.61 1.92 4.35 1.64 2.35 2.11 3.23 2.26 2.27 3.25 5.08 0.00 3.49 2.06 3.53 2.50 4.76 K alternative_donor CG8866,I_chr3R_5160165_5160221 chr3R - chr3R_5160165_5160232 chr3R_5160165_5160221 chr3R_5160065_5160164;chr3R_5160233_5160321 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 6.25 NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA K alternative_donor fz2 chr3L - chr3L_19153786_19163618;chr3L_19153786_19162943 chr3L_19153786_19163552 chr3L_19153719_19153785;chr3L_19163619_19163743 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG15739 chrX + chrX_11767537_11767914 chrX_11767578_11767914 chrX_11767915_11768298;chrX_11767352_11767536 2.90 4.44 0.00 4.65 3.33 5.13 2.50 0.00 1.14 0.00 0.00 1.72 0.00 2.38 1.92 6.82 5.88 14.81 2.04 6.17 0.00 16.13 2.44 3.17 0.00 2.70 16.67 4.35 NA 0.00 7.14 8.33 2.78 7.14 0.00 2.94 0.00 2.86 0.00 4.65 NA 0.00 2.63 3.70 NA 4.88 10.20 0.00 3.95 5.26 2.86 3.70 3.23 5.56 2.70 8.57 3.12 2.08 K intron_retention CG34413,I_chr2R_20771136_20772048,I_chr2R_20772104_20773774,RI_chr2R_20772104_20774745,C_chr2R_20772691_20773500,I_chr2R_20773500_20774745 chr2R + chr2R_20771258_20772048 chr2R_20771257_20771258;chr2R_20772048_20772049 chr2R_20771197_20771257;chr2R_20772049_20772103 6.61 9.02 11.11 4.40 7.44 9.26 6.20 8.43 5.24 4.12 9.78 6.19 7.48 6.06 6.57 6.73 3.51 9.48 5.77 8.21 7.56 11.94 5.42 6.43 9.78 7.29 9.68 16.41 15.19 4.60 2.76 10.29 6.82 6.52 5.08 3.42 5.29 7.50 4.49 5.66 10.42 4.33 6.94 4.29 8.70 4.17 4.20 5.76 6.61 8.49 8.81 7.62 8.99 5.56 5.48 8.18 4.95 3.81 N cassette Galpha49B,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8504447_8505299 chr2R_8504447_8504576;chr2R_8504706_8505299 chr2R_8504577_8504705 chr2R_8504292_8504446;chr2R_8505300_8505429 100.00 100.00 100.00 83.78 100.00 100.00 87.69 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 73.81 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA gro chr3R + chr3R_21870349_21870725;chr3R_21870349_21871190 chr3R_21870349_21871196 chr3R_21870166_21870348 11.39 18.57 9.36 9.51 10.08 8.27 10.07 7.86 8.76 9.18 13.07 10.25 10.29 15.53 11.43 8.13 7.96 7.78 12.99 11.91 9.09 12.90 12.60 10.33 14.07 6.38 13.13 19.32 11.39 9.05 14.16 14.38 12.23 10.61 14.20 10.83 9.03 11.98 11.98 13.90 14.91 11.70 12.39 11.03 14.15 11.18 5.95 14.22 9.00 10.23 14.40 5.94 11.27 12.16 9.71 12.08 13.11 14.46 K alternative_acceptor alpha-Cat,I_chr3L_23319861_23321813,I_chr3L_23322620_23322985,I_chr3L_23327841_23328002 chr3L - chr3L_23322499_23322985 chr3L_23322620_23322985 chr3L_23322986_23323085;chr3L_23322330_23322498 1.41 0.00 1.72 2.34 2.17 0.00 1.74 1.52 0.71 0.00 2.00 0.00 4.00 1.33 1.54 2.36 1.59 0.00 1.45 2.48 0.00 3.12 1.49 3.85 0.00 0.00 4.84 3.03 2.70 0.00 5.68 0.00 0.00 0.00 0.00 2.04 0.00 3.23 0.00 1.03 0.00 0.87 1.54 1.27 0.00 4.35 0.00 0.00 0.88 0.00 1.41 2.08 3.12 0.00 3.19 2.17 3.33 1.33 K intron_retention CG12075 chrX + chrX_8762258_8763246 chrX_8762257_8762258;chrX_8763246_8763247 chrX_8762043_8762257;chrX_8763247_8763941 19.52 NA NA NA NA NA NA NA 19.05 NA NA 11.76 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA 38.46 NA NA 26.67 NA NA NA NA NA NA NA 25.00 NA NA NA 12.50 NA 8.33 NA NA NA NA NA NA NA NA NA NA K intron_retention UGP,I_chr3L_9346335_9346837 chr3L - chr3L_9346930_9346987 chr3L_9346929_9346930;chr3L_9346987_9346988 chr3L_9346838_9346929;chr3L_9346988_9347174 0.00 0.00 0.00 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD musashi,C_chr3R_21387506_21389801 chr3R + chr3R_21341963_21344982 chr3R_21342072_21344982 chr3R_21344983_21345451;chr3R_21341861_21341962 90.24 NA NA 94.34 NA NA 95.24 92.68 89.09 NA NA 78.57 86.36 85.71 NA 72.41 95.83 NA 90.48 NA NA NA NA NA NA NA NA NA NA 90.00 NA NA 95.45 90.91 NA NA NA NA NA 70.00 NA 96.77 NA NA NA NA NA 95.83 78.57 NA NA NA NA NA 80.95 NA NA NA K intron_retention scrib,I_chr3R_22381374_22399575,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22400503_22400572 chr3R_22400502_22400503;chr3R_22400572_22400573 chr3R_22400302_22400502;chr3R_22400573_22400759 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.55 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rpn5 chr3R + chr3R_1615349_1615399 chr3R_1615348_1615349;chr3R_1615399_1615400 chr3R_1615211_1615348;chr3R_1615400_1615415 98.65 97.62 97.62 100.00 96.55 100.00 100.00 100.00 98.81 95.45 100.00 98.72 97.30 97.22 100.00 96.63 100.00 97.22 95.92 98.70 100.00 95.65 98.55 96.77 100.00 100.00 98.00 100.00 100.00 86.67 98.00 100.00 95.24 100.00 96.55 100.00 97.14 100.00 96.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 97.37 98.65 95.12 96.55 100.00 96.88 100.00 95.24 95.45 97.50 97.56 100.00 K intron_retention vir-1,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,noncoding_2764,I_chr2L_12421830_12423260 chr2L - chr2L_12421830_12423278 chr2L_12421829_12421830;chr2L_12423278_12423279 chr2L_12421816_12421829;chr2L_12423279_12423360 84.84 84.62 75.86 91.38 95.45 73.08 90.00 85.07 85.71 NA 92.86 82.35 90.91 76.92 85.71 85.19 74.07 77.27 81.82 81.82 75.00 64.29 60.00 NA 88.89 81.58 100.00 94.44 60.00 88.89 78.79 92.31 86.67 79.66 77.78 91.67 NA NA NA 100.00 100.00 91.67 82.61 92.31 77.78 75.00 NA 88.89 83.08 82.35 88.89 88.89 88.89 NA 82.05 75.00 90.91 84.62 K multi_cassette Pk61C,CE_chr3L_129889_141769,I_chr3L_132531_133824,I_chr3L_133962_134014,I_chr3L_136336_137121,I_chr3L_136336_141563 chr3L + chr3L_129889_141769 chr3L_129889_135457;chr3L_135843_135966;chr3L_136336_141769 chr3L_135458_135842;chr3L_135967_136335 chr3L_129840_129888;chr3L_141770_141837 100.00 98.44 100.00 98.75 97.87 92.45 98.63 98.80 99.21 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 97.44 97.67 99.42 97.78 100.00 98.91 100.00 100.00 100.00 100.00 98.25 100.00 100.00 100.00 100.00 98.26 98.82 100.00 100.00 100.00 100.00 98.85 99.30 100.00 99.19 100.00 98.65 100.00 100.00 100.00 100.00 98.98 96.97 100.00 97.78 100.00 100.00 97.92 100.00 100.00 100.00 K alternative_donor CG4433,I_chr3R_15845478_15846094 chr3R - chr3R_15845478_15846094;chr3R_15845478_15846069 chr3R_15845478_15846006 chr3R_15845378_15845477;chr3R_15846095_15846194 1.64 0.00 1.92 2.90 2.08 3.92 3.08 1.75 0.91 1.28 2.38 2.27 6.45 0.00 3.39 2.50 2.38 2.13 2.13 1.72 2.22 3.51 0.00 1.25 1.79 0.00 1.30 3.23 1.52 1.64 0.00 5.56 3.64 1.59 2.63 2.27 0.79 1.22 0.91 1.56 0.00 1.03 0.00 0.00 2.08 1.85 0.00 2.94 1.05 0.00 1.27 0.00 0.00 1.82 1.54 1.59 1.64 2.78 K intron_retention CG8920 chr2R + chr2R_16211917_16212352 chr2R_16211916_16211917;chr2R_16212352_16212353 chr2R_16211798_16211916;chr2R_16212353_16212626 5.71 4.65 9.09 8.51 3.03 8.33 5.71 8.89 5.06 11.76 0.00 8.33 0.00 3.70 2.63 10.71 8.33 10.71 7.69 5.08 0.00 3.77 1.67 3.64 6.25 3.57 10.42 18.92 6.82 4.88 3.45 11.11 6.35 6.38 6.45 4.17 7.14 7.41 0.00 9.62 10.81 5.80 0.00 6.52 3.23 9.80 4.92 17.78 4.44 6.78 4.84 4.35 0.00 0.00 0.00 3.45 5.00 7.27 K jcn_only_AA CG15107,I_chr2R_14859289_14859333 chr2R - chr2R_14859269_14859333;chr2R_14859281_14859333 chr2R_14859289_14859333 chr2R_14859334_14859398;chr2R_14859203_14859268 0.00 0.00 0.00 0.00 3.45 0.00 0.00 4.05 1.28 NA 0.00 0.00 2.50 0.00 0.00 1.28 2.63 0.00 0.00 0.72 0.00 2.17 1.89 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 2.27 0.00 7.32 1.82 0.00 3.45 1.89 0.94 1.25 3.23 0.00 2.08 0.00 0.00 0.00 0.95 0.00 1.85 2.44 0.00 0.00 0.00 3.57 0.00 0.00 0.52 K intron_retention CG5484 chr3R + chr3R_22545031_22545088 chr3R_22545030_22545031;chr3R_22545088_22545089 chr3R_22544644_22545030;chr3R_22545089_22545529 0.00 0.00 1.96 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 5.77 2.13 0.78 2.35 3.19 4.27 1.89 5.68 0.00 0.00 1.83 0.00 1.13 1.43 1.98 0.72 0.00 0.00 0.00 2.70 0.00 0.00 0.74 0.65 0.00 0.00 1.96 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 K intron_retention RpS11,I_chr2R_8087545_8087698,I_chr2R_8087747_8088193 chr2R - chr2R_8087747_8087932 chr2R_8087746_8087747;chr2R_8087932_8087933 chr2R_8087699_8087746;chr2R_8087933_8088055 97.22 95.45 94.44 95.24 100.00 100.00 85.19 96.15 100.00 100.00 100.00 91.67 93.33 100.00 95.45 93.10 100.00 90.91 94.12 89.74 92.86 97.25 97.06 93.75 100.00 96.00 97.37 100.00 98.44 95.65 98.44 100.00 100.00 96.55 100.00 100.00 96.43 96.43 97.56 92.00 100.00 97.37 100.00 95.65 100.00 97.78 97.14 100.00 97.73 100.00 97.14 93.75 100.00 96.55 95.00 97.22 97.14 98.63 K intron_retention CREF_chr3R_5589662_5589762,CG8500,CG8507 chr3R + chr3R_5617295_5617351 chr3R_5617294_5617295;chr3R_5617351_5617352 chr3R_5617192_5617294;chr3R_5617352_5617513 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor vig chr2L - chr2L_15067690_15067915;chr2L_15067690_15067952;chr2L_15067690_15067995;chr2L_15067690_15067868;chr2L_15067690_15067999 chr2L_15067690_15068029 chr2L_15066937_15067689;chr2L_15068030_15068031 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD RI_chr3L_17480321_17481164,Oatp74D,chr3L_17480319_17480976.0,I_chr3L_17480594_17481164,I_chr3L_17500359_17500724 chr3L + chr3L_17480290_17481164;chr3L_17480594_17481164;chr3L_17480301_17481164 chr3L_17480321_17481164 chr3L_17481165_17481264;chr3L_17480274_17480289 3.85 NA NA NA NA NA NA NA 3.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG5594,CG2812 chr2R + chr2R_19811618_19811938 chr2R_19811617_19811618;chr2R_19811938_19811939 chr2R_19811525_19811617;chr2R_19811939_19812072 0.00 0.00 0.00 1.25 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.72 0.00 0.00 2.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive CG8929 chr2R + chr2R_16214899_16215371,chr2R_16215640_16215831 chr2R_16214899_16214948,chr2R_16215069_16215831 chr2R_16215372_16215639 chr2R_16214949_16215068 chr2R_16214792_16214898;chr2R_16215832_16216526 8.33 12.12 11.11 8.11 15.00 7.41 10.00 6.98 8.93 9.09 13.04 6.82 20.00 12.50 13.79 9.38 13.04 15.00 10.34 10.77 8.33 2.78 7.55 5.13 4.35 20.00 8.11 8.33 5.88 5.26 10.71 9.09 10.00 13.51 5.26 3.12 6.25 6.45 13.79 7.32 15.38 11.32 8.00 6.45 4.76 4.76 10.00 10.00 6.98 6.45 4.76 9.09 9.09 3.57 7.69 6.45 4.35 11.11 K intron_retention Crc,Scm chr3R - chr3R_5455338_5455429 chr3R_5455337_5455338;chr3R_5455429_5455430 chr3R_5454930_5455337;chr3R_5455430_5455902 0.00 0.00 0.00 0.15 0.00 0.18 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.05 0.00 0.00 0.33 0.28 0.19 0.00 0.08 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.17 0.00 0.00 0.09 0.00 0.08 0.00 0.11 0.00 0.05 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG15134 chr2L + chr2L_16905390_16905550 chr2L_16905390_16905490 chr2L_16905299_16905389;chr2L_16905551_16905594 90.91 78.57 87.50 93.55 93.75 100.00 84.38 79.07 87.27 91.67 93.33 88.89 88.89 87.50 90.91 92.00 95.65 92.00 91.67 83.33 78.95 92.59 76.47 92.86 92.86 100.00 83.33 100.00 83.33 93.33 95.00 NA 82.61 92.31 93.75 93.75 83.33 84.62 85.00 82.14 NA 91.67 88.24 95.00 NA NA 87.50 76.47 97.22 NA 84.00 100.00 85.71 NA 90.91 100.00 NA NA K intron_retention bur,I_chr2L_21175961_21176006,I_chr2L_21177679_21178250,I_chr2L_21177960_21179329 chr2L - chr2L_21175934_21176006 chr2L_21175933_21175934;chr2L_21176006_21176007 chr2L_21175861_21175933;chr2L_21176007_21176106 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7288,CG32544 chrX + chrX_18753675_18753731 chrX_18753674_18753675;chrX_18753731_18753732 chrX_18752522_18753674;chrX_18753732_18754004 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9578 chrX + chrX_20064397_20064456 chrX_20064396_20064397;chrX_20064456_20064457 chrX_20064213_20064396;chrX_20064457_20064791 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 6.67 NA 12.50 0.00 0.00 NA NA 0.00 NA 15.38 NA NA NA 7.41 NA 0.00 0.00 NA NA 0.00 0.00 5.56 NA NA NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention CG31600 chr2L - chr2L_21914952_21915015 chr2L_21914951_21914952;chr2L_21915015_21915016 chr2L_21914802_21914951;chr2L_21915016_21915168 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention CG8814 chr2L + chr2L_2876411_2876783 chr2L_2876410_2876411;chr2L_2876783_2876784 chr2L_2875386_2876410;chr2L_2876784_2877163 0.00 NA 0.00 6.67 NA 0.00 0.00 0.00 2.56 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 5.71 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rpb11,I_chr2L_17410178_17410250,I_chr2L_17410178_17410317 chr2L - chr2L_17410031_17410087 chr2L_17410030_17410031;chr2L_17410087_17410088 chr2L_17409856_17410030;chr2L_17410088_17410177 2.03 1.19 1.68 2.29 0.00 1.85 2.49 2.82 1.71 3.45 1.22 0.00 0.83 0.00 2.33 2.29 1.75 0.00 0.79 1.65 3.09 6.67 3.36 3.15 3.12 4.48 4.11 3.45 20.83 0.00 1.98 1.00 0.00 0.68 3.39 0.00 1.09 2.80 2.06 2.34 6.15 2.58 1.14 1.10 1.18 1.47 3.19 0.00 2.03 2.67 1.83 3.81 4.71 1.98 2.22 2.92 1.05 2.61 K intron_retention CG12713 chr3L + chr3L_15825888_15825955 chr3L_15825887_15825888;chr3L_15825955_15825956 chr3L_15825585_15825887;chr3L_15825956_15826444 11.14 5.56 6.67 25.00 19.05 0.00 0.00 16.00 11.76 0.00 0.00 5.88 0.00 10.00 0.00 7.41 NA NA 5.56 10.53 14.29 5.26 10.53 12.50 12.50 20.00 17.39 NA 35.71 0.00 30.43 NA 8.33 6.06 NA NA 7.41 11.76 9.38 13.79 19.05 14.29 NA 12.50 15.00 12.50 7.69 20.00 10.00 22.22 14.81 0.00 8.00 14.29 12.50 11.76 9.68 14.29 K cassette CG7777,I_chr2R_7323928_7328572 chr2R + chr2R_7328996_7329439 chr2R_7328996_7329245;chr2R_7329378_7329439 chr2R_7329246_7329377 chr2R_7328790_7328995;chr2R_7329440_7329695 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 1.26 0.00 0.00 0.51 0.00 0.93 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.87 0.79 0.00 0.85 0.00 0.00 0.00 0.00 0.00 1.09 0.78 1.27 0.00 0.00 0.00 0.00 0.65 0.00 0.44 0.00 K intron_retention Orc2 chr3R + chr3R_9792218_9792287 chr3R_9792217_9792218;chr3R_9792287_9792288 chr3R_9791372_9792217;chr3R_9792288_9792803 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.82 4.55 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG18228 chr3R - chr3R_4087273_4087522 chr3R_4087272_4087273;chr3R_4087522_4087523 chr3R_4087045_4087272;chr3R_4087523_4087669 50.00 54.17 32.43 65.38 33.33 48.15 56.67 44.59 41.67 NA 66.67 44.68 43.75 34.88 55.56 35.58 61.54 54.55 58.70 64.10 52.63 31.82 47.06 26.32 63.64 61.54 29.41 40.00 80.00 46.15 46.94 56.25 71.43 59.09 40.00 NA 36.36 40.00 54.55 62.07 87.50 53.33 43.59 37.50 60.00 57.89 36.84 64.29 51.19 40.62 41.94 45.83 53.85 50.00 46.88 52.63 45.71 55.00 K intron_retention cher,I_chr3R_12943024_12948119 chr3R - chr3R_12943024_12944458 chr3R_12943023_12943024;chr3R_12944458_12944459 chr3R_12942924_12943023;chr3R_12944459_12944857 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 1.40 0.00 0.00 0.43 0.00 0.00 0.00 0.74 0.00 1.99 0.00 0.00 0.00 0.00 0.00 1.23 0.70 1.12 0.00 0.00 0.85 0.31 0.00 0.00 0.75 0.00 0.00 0.64 0.00 0.00 0.00 0.00 2.67 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.45 0.00 0.00 0.00 K jcn_only_AA RhoGAP68F,RI_chr3L_12133229_12134100 chr3L + chr3L_12134478_12134543 chr3L_12134478_12134540 chr3L_12134352_12134477;chr3L_12134544_12134576 90.89 95.65 NA NA NA NA 90.32 79.31 89.80 NA 95.00 96.30 90.00 NA 90.00 NA 90.48 NA NA 94.59 NA NA 87.10 91.67 NA NA NA NA NA 85.00 100.00 NA NA 91.30 NA NA 96.43 95.65 92.59 90.00 NA 78.79 NA NA NA NA 93.10 NA 83.33 NA 95.83 NA NA NA NA 86.96 NA NA N alternative_donor Syb chr2R - chr2R_6137333_6138451;chr2R_6137333_6138021 chr2R_6137333_6137873 chr2R_6137005_6137332;chr2R_6138452_6138649 92.63 96.26 87.95 86.16 75.68 86.30 88.10 82.76 96.79 85.94 97.53 94.85 95.08 92.31 92.63 97.62 91.43 93.33 91.43 98.59 96.05 74.29 95.50 94.21 93.33 83.33 93.27 93.59 59.57 89.89 92.47 93.18 83.85 96.64 87.69 87.88 94.07 91.26 90.00 91.41 75.23 97.02 91.67 91.84 92.70 95.07 93.33 79.61 94.85 94.94 94.29 86.79 94.34 94.79 91.76 96.40 96.00 90.36 K intron_retention Vps26,CG14805,CG14806,mRpL16 chrX + chrX_1768315_1768393 chrX_1768314_1768315;chrX_1768393_1768394 chrX_1767927_1768314;chrX_1768394_1770603 1.75 1.11 1.56 7.14 0.00 3.51 1.54 3.62 0.60 2.86 0.00 2.17 0.00 0.98 1.42 1.75 0.00 0.93 0.00 1.23 0.00 7.10 5.56 5.41 4.29 1.83 2.80 4.76 6.63 0.00 4.67 1.05 1.34 2.99 1.52 5.19 2.68 0.00 1.52 1.79 3.56 1.73 1.05 3.60 1.75 2.33 3.85 2.79 1.97 0.00 4.81 1.54 2.17 0.00 0.80 3.88 0.00 1.04 K alternative_donor Galpha49B,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500357_8501071 chr2R_8500390_8501071 chr2R_8501072_8501850;chr2R_8500333_8500356 51.66 NA 64.29 71.43 40.00 66.67 47.83 43.75 46.67 NA 58.82 39.58 36.00 39.13 75.00 46.88 47.06 81.82 52.94 51.72 56.25 58.33 50.00 46.15 90.00 53.33 36.36 NA NA NA 59.09 NA NA 51.61 30.00 46.15 53.85 NA NA 50.00 NA 66.67 53.33 47.06 NA NA NA 66.67 44.44 NA 57.14 35.00 NA NA 52.63 NA NA NA K alternative_last_exon PGRP-LC,E_chr3L_9335847_9338977 chr3L + chr3L_9338168_9340739;chr3L_9338168_9338708 chr3L_9338168_9339690 chr3L_9340740_9341541;chr3L_9338709_9338860 chr3L_9339691_9339845 chr3L_9338000_9338167 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention eIF-5A,I_chr2R_19945430_19946454,I_chr2R_19945576_19946006,I_chr2R_19945723_19946006,I_chr2R_19945783_19946006,I_chr2R_19945852_19946006,I_chr2R_19945875_19946006,I_chr2R_19945921_19946006,I_chr2R_19946177_19946252,I_chr2R_19946177_19946255,I_chr2R_19946177_19946454,E_chr2R_19946177_19946508,I_chr2R_19946186_19946252,I_chr2R_19946186_19946255,I_chr2R_19946186_19946454,I_chr2R_19946186_19946508,I_chr2R_19946299_19946454,I_chr2R_19946657_19946733,I_chr2R_19948517_19948682 chr2R + chr2R_19945430_19946006 chr2R_19945429_19945430;chr2R_19946006_19946007 chr2R_19945330_19945429;chr2R_19946007_19946106 0.04 0.00 0.00 0.20 0.10 0.00 0.07 0.09 0.06 0.00 0.00 0.05 0.05 0.09 0.00 0.07 0.00 0.00 0.08 0.04 0.09 0.44 0.00 0.27 0.00 0.08 0.28 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.13 0.16 0.00 0.06 0.00 0.10 0.05 0.16 0.04 0.00 0.00 0.00 0.02 0.41 0.36 0.00 0.19 0.00 0.00 0.00 0.06 0.00 K cassette norpA,I_chrX_4217835_4219380,I_chrX_4219265_4219380 chrX + chrX_4217189_4226828 chrX_4217189_4219380;chrX_4219650_4226828 chrX_4219381_4219649 chrX_4217177_4217188;chrX_4226829_4226867 77.78 83.33 55.56 78.57 83.33 62.50 81.82 85.71 96.15 60.00 100.00 86.67 75.00 78.57 80.00 78.95 88.89 85.71 69.23 60.00 66.67 70.00 75.00 63.64 100.00 70.00 60.00 NA 100.00 80.00 66.67 NA 66.67 77.78 63.64 42.86 83.33 NA NA 61.11 83.33 72.22 85.71 58.33 NA 83.33 NA 70.59 83.33 NA 76.92 83.33 50.00 NA 80.00 NA NA 53.85 K intron_retention CG12773 chrX - chrX_1245314_1245377 chrX_1245313_1245314;chrX_1245377_1245378 chrX_1245135_1245313;chrX_1245378_1245959 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Pur-alpha,I_chr4_581447_585166 chr4 + chr4_580927_580997 chr4_580927_580974 chr4_580745_580926;chr4_580998_581033 100.00 NA NA NA NA NA 87.50 100.00 90.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K multi_cassette brp chr2R + chr2R_5417712_5421306 chr2R_5417712_5419850;chr2R_5420034_5420168;chr2R_5420490_5421306 chr2R_5419851_5420033;chr2R_5420169_5420489 chr2R_5417595_5417711;chr2R_5421307_5423073 100.00 75.00 NA NA NA NA NA NA 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA NA NA 100.00 NA 90.91 100.00 100.00 100.00 NA 100.00 100.00 80.00 80.00 NA 100.00 100.00 NA 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 NA 75.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 NA NA NA NA 66.67 100.00 100.00 K jcn_only_AA CG11006,F_chr3L_12799159_12799339 chr3L + chr3L_12799438_12799952;chr3L_12799438_12800192;chr3L_12799438_12799955;chr3L_12799438_12800078 chr3L_12799438_12799967 chr3L_12799340_12799437;chr3L_12800193_12800930 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 K cassette Vrp1,I_chr2R_17996482_17997091,I_chr2R_17996511_17997091,I_chr2R_17997529_17997692 chr2R - chr2R_17996286_17997091 chr2R_17996286_17996355;chr2R_17996485_17997091 chr2R_17996356_17996484 chr2R_17995991_17996285;chr2R_17997092_17997191 7.35 3.10 9.59 2.53 9.43 6.56 14.81 10.26 6.54 4.20 17.78 6.02 12.90 7.41 7.35 10.64 8.51 40.98 10.17 4.84 17.50 34.17 2.87 4.41 7.14 9.38 6.85 8.28 10.42 5.20 5.56 12.66 8.72 9.18 4.51 7.07 4.17 4.72 4.67 8.73 13.95 7.39 6.52 8.13 8.72 8.55 6.31 13.25 4.31 7.91 7.41 3.28 0.00 4.76 5.00 4.90 3.06 5.56 K jcn_only_AD CG34394,I_chr2L_3365674_3365965 chr2L - chr2L_3361444_3362442 chr2L_3361444_3362415 chr2L_3360996_3361443;chr2L_3362443_3362718 55.88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 55.88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Idh,I_chr3L_8351006_8351949,I_chr3L_8351036_8351655 chr3L - chr3L_8351006_8353892 chr3L_8351005_8351006;chr3L_8353892_8353893 chr3L_8350936_8351005;chr3L_8353893_8353937 2.70 5.00 5.13 8.70 0.00 4.76 5.41 3.03 4.35 5.88 0.00 5.88 4.35 2.38 5.00 1.49 0.00 0.00 0.00 4.00 0.00 7.84 2.75 2.13 4.08 7.69 2.80 6.38 1.92 0.00 2.70 4.00 3.95 1.89 3.77 7.55 0.00 0.00 3.85 2.50 0.00 2.60 0.00 0.00 0.00 5.00 0.00 0.00 2.70 0.00 3.23 0.00 5.26 2.00 3.12 3.33 0.00 1.64 K intron_retention Pk61C,CE_chr3L_129889_141769 chr3L + chr3L_135385_135457 chr3L_135384_135385;chr3L_135457_135458 chr3L_135330_135384;chr3L_135458_135842 0.00 0.00 0.00 0.00 6.25 5.56 0.00 7.84 2.90 NA 0.00 6.06 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 5.56 4.55 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 5.56 NA NA 7.14 0.00 4.35 0.00 NA 3.92 3.70 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 NA K cassette Crk,RI_chr4_231302_233315,I_chr4_231307_232253 chr4 + chr4_232609_233253 chr4_232609_232740;chr4_232881_233253 chr4_232741_232880 chr4_232506_232608;chr4_233254_233355 2.70 2.70 3.12 0.00 NA 0.00 3.28 3.61 2.70 0.00 13.04 1.45 17.24 2.94 3.23 2.60 3.23 0.00 1.72 5.80 6.90 7.14 3.12 3.45 0.00 0.00 3.03 NA 0.00 2.70 0.00 2.78 1.82 2.35 0.00 6.45 NA 0.00 4.76 4.08 2.56 1.41 0.00 3.70 3.23 4.29 2.50 3.51 2.41 3.85 2.56 0.00 0.00 3.23 2.44 1.96 3.23 2.50 K cassette scrib,I_chr3R_22416440_22420970,noncoding_19380,I_chr3R_22425016_22429281 chr3R + chr3R_22424435_22426968 chr3R_22424435_22424829;chr3R_22425016_22426968 chr3R_22424830_22425015 chr3R_22424335_22424434;chr3R_22426969_22426981 14.86 17.65 25.00 NA NA 8.33 23.08 16.67 12.20 NA NA 26.09 NA NA 14.29 7.69 27.27 20.00 NA 18.52 NA 9.68 14.71 6.25 11.76 16.67 18.18 NA 14.29 12.50 NA 15.38 10.53 23.08 25.00 8.11 9.68 20.00 13.64 9.68 NA 16.67 NA 16.67 15.00 22.22 NA 16.67 9.09 NA 14.29 NA 10.53 NA NA 14.29 10.71 19.05 K intron_retention Nak chr2L - chr2L_18959389_18959445 chr2L_18959388_18959389;chr2L_18959445_18959446 chr2L_18959317_18959388;chr2L_18959446_18960680 100.00 NA 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 91.67 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 94.74 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 K intron_retention CG4829,I_chrX_16717240_16717547 chrX + chrX_16717240_16717547 chrX_16717239_16717240;chrX_16717547_16717548 chrX_16717140_16717239;chrX_16717548_16717647 35.50 NA NA 50.00 NA NA NA 41.67 34.78 NA NA 58.82 28.57 58.33 NA 33.33 NA NA NA 50.00 NA NA 35.29 45.45 NA 0.00 38.46 NA NA NA 25.00 NA 6.67 50.00 NA NA NA NA 33.33 40.00 25.00 30.00 NA NA NA NA NA 40.00 35.71 NA 26.67 NA NA NA NA NA NA NA K intron_retention ken chr2R + chr2R_19758404_19762447 chr2R_19758403_19758404;chr2R_19762447_19762448 chr2R_19757795_19758403;chr2R_19762448_19762617 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 1.19 0.00 0.00 0.00 0.00 0.00 4.65 4.62 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CREI_chr2L_9938511_9938564,CG5853,RI_chr2L_9942818_9944294,I_chr2L_9944682_9947179 chr2L - chr2L_9941481_9941538 chr2L_9941480_9941481;chr2L_9941538_9941539 chr2L_9941119_9941480;chr2L_9941539_9941639 3.67 10.26 0.00 4.11 2.33 0.00 7.02 4.90 2.96 5.00 0.00 3.64 4.26 4.65 0.00 25.42 0.00 9.43 0.00 4.32 7.69 1.77 24.14 5.41 0.00 0.00 9.09 0.00 13.79 0.00 0.00 0.00 19.05 2.74 0.00 15.38 0.00 8.00 4.35 11.43 0.00 7.62 3.70 4.65 0.00 15.38 0.00 8.33 3.19 11.43 0.00 9.09 0.00 0.00 3.33 NA 4.30 0.00 K intron_retention yuri,F_chr2L_15260838_15261717 chr2L - chr2L_15262013_15262069 chr2L_15262012_15262013;chr2L_15262069_15262070 chr2L_15261912_15262012;chr2L_15262070_15262304 0.00 0.00 0.00 2.29 0.00 0.00 0.00 1.32 1.24 0.00 0.00 1.64 0.00 0.00 1.03 0.00 0.00 0.00 0.00 1.27 1.33 0.00 2.36 0.00 0.00 1.00 6.25 10.53 0.00 0.00 0.00 0.00 0.00 2.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 2.23 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 K intron_retention hkl chr2L + chr2L_19047826_19047913 chr2L_19047825_19047826;chr2L_19047913_19047914 chr2L_19047716_19047825;chr2L_19047914_19048360 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.46 0.00 0.00 1.78 1.18 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 1.47 0.00 1.66 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 1.48 0.00 K intron_retention endoB chr2R - chr2R_15196319_15196897 chr2R_15196318_15196319;chr2R_15196897_15196898 chr2R_15196078_15196318;chr2R_15196898_15197088 0.00 1.59 0.00 7.84 0.00 1.52 5.00 0.00 1.94 0.00 0.00 1.06 0.00 0.00 0.00 0.00 11.11 0.00 0.00 1.36 3.39 0.00 0.00 2.25 3.92 5.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 2.80 0.00 0.00 1.16 0.00 1.98 3.33 0.00 0.00 3.12 0.00 1.35 2.30 0.00 5.26 0.00 0.00 0.00 1.41 1.67 7.27 0.00 K intron_retention Pdsw chr2L + chr2L_3466229_3466315 chr2L_3466228_3466229;chr2L_3466315_3466316 chr2L_3466160_3466228;chr2L_3466316_3466416 8.62 5.08 6.94 7.92 5.88 5.77 13.21 9.40 3.63 12.20 11.86 8.33 6.06 6.67 5.88 6.82 6.67 6.58 7.41 8.28 3.39 11.36 4.44 8.75 30.56 43.55 29.73 15.00 32.00 25.00 7.79 10.71 18.18 4.88 7.69 36.67 6.14 4.08 13.24 8.00 52.38 6.51 8.62 11.90 8.51 24.44 9.46 15.79 8.18 11.32 17.95 8.22 15.56 9.62 10.59 9.78 8.22 9.38 K cassette fl(2)d,I_chr2R_9709063_9711788 chr2R - chr2R_9709063_9711296 chr2R_9709063_9709270;chr2R_9709631_9711296 chr2R_9709271_9709630 chr2R_9708963_9709062;chr2R_9711297_9711975 38.24 31.34 46.15 46.48 33.33 39.02 37.50 61.97 35.92 6.90 31.43 33.73 47.22 54.84 44.44 64.15 48.48 40.43 43.90 35.24 43.33 17.74 46.59 29.55 36.36 62.50 42.86 29.31 28.26 22.86 73.97 45.71 33.33 51.43 43.18 38.18 14.97 19.19 22.11 53.57 69.57 36.67 46.15 43.10 36.96 43.18 30.36 63.16 47.30 28.81 32.91 25.00 38.24 35.00 53.06 23.86 29.27 88.00 K intron_retention Upf1 chrX - chrX_11795313_11795381 chrX_11795312_11795313;chrX_11795381_11795382 chrX_11794023_11795312;chrX_11795382_11798714 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention B52,E_chr3R_9488770_9491174 chr3R + chr3R_9487104_9487423 chr3R_9487103_9487104;chr3R_9487423_9487424 chr3R_9487037_9487103;chr3R_9487424_9487581 89.90 NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA 100.00 NA 88.89 NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA K intron_retention CG17689 chr3L + chr3L_13502435_13502497 chr3L_13502434_13502435;chr3L_13502497_13502498 chr3L_13502150_13502434;chr3L_13502498_13503200 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 1.96 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.16 14.29 2.63 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ptp61F,RI_chr3L_1345162_1345493 chr3L - chr3L_1346451_1350371 chr3L_1346450_1346451;chr3L_1350371_1350372 chr3L_1346277_1346450;chr3L_1350372_1350574 1.15 1.15 1.06 1.59 1.79 0.00 1.94 0.83 0.69 0.00 3.39 2.44 3.03 1.35 0.00 1.89 1.64 0.00 1.19 3.00 0.00 2.00 0.76 0.76 2.15 0.00 1.45 3.03 2.33 0.00 2.06 0.00 1.79 2.44 2.56 2.22 1.98 1.01 0.80 0.47 0.00 1.23 2.67 0.00 2.56 0.71 0.00 0.56 1.32 1.89 0.68 0.00 0.00 0.00 0.00 0.00 2.04 0.00 K cassette lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22820498_22832085 chr2L_22820498_22831505;chr2L_22831575_22832085 chr2L_22831506_22831574 chr2L_22820398_22820497;chr2L_22832086_22832154 83.33 81.82 85.19 20.00 81.82 80.77 86.96 73.13 88.46 100.00 61.54 66.00 95.65 75.00 94.74 69.23 89.29 78.26 86.84 79.55 92.31 94.74 76.67 85.71 73.33 40.62 88.89 70.00 45.00 73.08 90.00 94.12 79.17 80.00 95.24 78.95 83.33 92.31 82.35 77.14 90.48 80.39 86.67 84.62 64.71 85.71 87.50 75.61 83.82 93.75 87.50 94.12 71.43 77.78 83.33 95.00 85.00 72.73 K intron_retention CHKov1,F_chr3R_21149619_21151172 chr3R - chr3R_21149651_21149718 chr3R_21149650_21149651;chr3R_21149718_21149719 chr3R_21149588_21149650;chr3R_21149719_21149810 0.00 0.00 0.00 7.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RhoGDI chr3L + chr3L_19921875_19923920 chr3L_19922009_19923920 chr3L_19923921_19924114;chr3L_19921868_19921874 100.00 95.45 100.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 98.63 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 K cassette CG7841,RI_chr3L_15499446_15500898,I_chr3L_15500695_15500898,RI_chr3L_15500713_15500898 chr3L - chr3L_15499446_15500898 chr3L_15499446_15500572;chr3L_15500667_15500898 chr3L_15500573_15500666 chr3L_15499346_15499445;chr3L_15500899_15500998 100.00 90.91 100.00 100.00 100.00 100.00 95.83 100.00 95.24 100.00 100.00 100.00 85.71 100.00 100.00 92.31 100.00 88.89 100.00 85.71 90.00 71.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 94.44 100.00 92.31 100.00 100.00 93.33 89.47 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 92.86 100.00 100.00 100.00 100.00 88.89 100.00 100.00 K alternative_acceptor CG3308,I_chr3R_17098558_17099131,I_chr3R_17099005_17099062 chr3R - chr3R_17098558_17099062 chr3R_17099005_17099062 chr3R_17099063_17099162;chr3R_17098458_17098557 0.00 1.19 0.00 0.69 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 1.09 0.00 0.53 0.00 1.95 0.00 0.71 0.00 0.00 0.00 0.00 0.73 0.00 0.72 0.88 0.00 0.82 0.00 1.00 0.00 0.00 0.62 0.38 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette spin,I_chr2R_12013288_12013847 chr2R + chr2R_12020141_12023531 chr2R_12020141_12020333;chr2R_12020596_12023531 chr2R_12020334_12020595 chr2R_12020064_12020140;chr2R_12023532_12023630 96.15 97.73 97.83 96.51 100.00 97.30 98.18 98.86 98.91 94.29 97.62 94.67 97.06 96.55 98.18 100.00 100.00 96.67 97.56 99.14 97.56 70.97 95.45 90.24 88.89 93.18 93.75 94.16 88.00 86.25 97.62 93.62 90.91 98.44 92.16 94.12 95.60 88.52 92.21 91.51 98.59 97.75 97.06 96.74 90.91 92.68 93.33 93.27 96.34 87.67 89.66 97.78 98.28 96.00 96.30 92.06 94.59 96.15 K intron_retention CG1951 chr3R + chr3R_24855476_24855543 chr3R_24855475_24855476;chr3R_24855543_24855544 chr3R_24855299_24855475;chr3R_24855544_24856660 0.00 0.00 0.00 5.66 0.00 3.85 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 1.47 0.00 0.00 0.00 0.00 6.56 0.00 0.00 0.00 0.00 2.70 0.00 0.00 8.57 0.00 0.00 1.54 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG42270,I_chrX_17615384_17615455,I_chrX_17639729_17640603 chrX + chrX_17644882_17645062 chrX_17644882_17645041 chrX_17644587_17644881;chrX_17645063_17645343 8.29 9.58 8.24 9.09 5.56 7.81 6.52 10.67 7.36 6.72 5.88 10.62 10.53 8.93 7.23 11.11 6.25 9.09 10.00 7.66 7.59 9.22 7.14 8.29 9.43 12.00 7.57 6.52 8.31 6.67 9.00 10.88 8.12 10.38 8.44 6.82 7.30 8.67 8.37 8.95 14.42 7.03 6.90 11.69 7.31 7.92 7.41 7.69 8.70 9.39 7.51 10.53 5.06 7.30 6.52 9.80 8.33 11.00 K intron_retention CREF_chr3R_5589662_5589762,CG8500,CG8507 chr3R + chr3R_5617784_5617845 chr3R_5617783_5617784;chr3R_5617845_5617846 chr3R_5617568_5617783;chr3R_5617846_5618056 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 K intron_retention CG12065,CE_chrX_8469528_8477573 chrX + chrX_8480642_8481290 chrX_8480641_8480642;chrX_8481290_8481291 chrX_8480585_8480641;chrX_8481291_8481558 25.00 36.84 NA 8.57 13.33 NA 41.18 31.25 37.04 NA NA 6.38 38.46 16.67 NA NA 30.30 31.58 35.00 11.24 NA 14.55 29.17 20.83 22.73 5.88 25.00 28.12 23.08 29.41 NA NA 25.00 41.67 17.65 19.05 26.67 15.00 28.57 25.00 NA 20.69 NA 25.00 6.90 20.00 39.13 23.08 47.62 30.00 27.59 NA NA 25.00 17.65 43.75 35.71 NA K intron_retention CG41511 chr3LHet - chr3LHet_2198746_2198800 chr3LHet_2198745_2198746;chr3LHet_2198800_2198801 chr3LHet_2198346_2198745;chr3LHet_2198801_2199123 4.21 5.13 6.38 65.71 3.45 0.00 10.19 7.53 4.21 0.00 0.00 8.00 2.22 7.27 5.00 17.24 6.25 2.94 7.84 7.69 3.45 1.23 9.43 6.45 4.35 6.67 0.00 0.00 9.52 0.00 6.19 0.00 0.00 10.84 1.59 14.29 0.00 0.00 0.00 0.00 7.94 5.71 6.67 2.44 3.03 2.68 0.00 3.88 4.76 3.88 4.08 5.00 4.26 2.08 7.25 4.41 1.39 1.46 K jcn_only_AD CG11266,RI_chr2L_7033019_7034764,I_chr2L_7034274_7035406,RI_chr2L_7034911_7035074,I_chr2L_7051093_7051366 chr2L + chr2L_7034911_7035406 chr2L_7034913_7035406 chr2L_7035407_7035506;chr2L_7034869_7034910 45.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 45.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG9372 chr3L + chr3L_19600926_19601102 chr3L_19600925_19600926;chr3L_19601102_19601103 chr3L_19600354_19600925;chr3L_19601103_19601477 0.76 0.00 0.00 0.62 0.00 0.00 1.61 1.65 1.28 3.45 0.00 1.40 3.31 0.76 1.55 1.76 0.86 0.89 0.00 0.70 1.98 0.00 0.55 0.00 1.96 3.12 0.56 0.00 0.00 0.00 0.00 1.65 1.92 0.88 0.00 1.12 0.00 1.11 0.84 0.76 2.26 0.91 0.00 0.00 0.44 0.79 3.66 0.61 0.33 0.00 0.45 0.00 0.63 0.91 3.08 0.42 1.34 1.23 K jcn_only_AD CG10737 chr2R + chr2R_15060394_15060936 chr2R_15060427_15060936 chr2R_15060937_15061148;chr2R_15060217_15060393 0.00 0.00 0.68 0.00 0.73 0.88 0.00 0.56 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.36 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.30 0.00 0.00 0.53 0.89 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon cryptocephal,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21312209_21318320,chr2L_21312209_21318126;chr2L_21312209_21312283 chr2L_21312209_21314835 chr2L_21318321_21318419;chr2L_21312284_21312647 chr2L_21314836_21315347 chr2L_21312125_21312208 6.10 4.64 7.46 5.42 5.56 6.10 6.79 6.49 7.74 3.27 6.52 5.34 7.67 8.70 6.40 14.97 6.53 7.40 7.92 7.05 6.25 6.82 4.33 4.44 4.05 4.02 5.33 8.75 6.11 5.41 6.26 5.83 6.91 6.91 8.21 7.91 3.37 4.90 3.21 7.29 5.44 6.49 6.73 4.57 5.46 6.69 4.19 9.23 6.10 2.79 5.39 6.03 4.16 2.97 5.72 4.09 4.42 7.20 K alternative_donor CG10107,CG10103 chr3L - chr3L_6744544_6745259 chr3L_6744544_6745244 chr3L_6744453_6744543;chr3L_6745260_6745858 75.00 46.15 NA 69.23 NA NA 58.33 61.54 73.33 NA NA 81.25 85.71 85.71 NA 58.82 NA NA 55.56 75.00 NA 60.00 66.67 58.33 70.00 NA 71.43 80.00 NA 66.67 83.33 NA NA 64.71 NA NA 81.82 83.33 58.82 91.67 NA 80.00 55.56 75.00 NA 77.78 77.78 NA 84.62 NA 88.24 87.50 NA NA 77.78 NA NA NA K jcn_only_AD Spred,I_chr2R_10655876_10656041,I_chr2R_10655876_10656193,I_chr2R_10655876_10656868 chr2R - chr2R_10655876_10656848;chr2R_10655876_10656782;chr2R_10655876_10656526;chr2R_10655876_10656871 chr2R_10655876_10656878 chr2R_10655776_10655875;chr2R_10656879_10656886 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 1.39 NA 0.00 0.00 0.00 2.63 2.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA NA 0.00 NA 3.33 0.00 0.00 NA 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K cassette CLIP-190,I_chr2L_17394493_17404060,I_chr2L_17401291_17404060,F_chr2L_17401582_17401681,I_chr2L_17401582_17402303 chr2L + chr2L_17401291_17404060;chr2L_17401291_17402374 chr2L_17401291_17401515;chr2L_17401582_17404060,chr2L_17401582_17402374 chr2L_17401516_17401581 chr2L_17401191_17401290;chr2L_17404061_17404076 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 90.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 92.86 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 K alternative_acceptor X11L,I_chrX_17497609_17497728,RE_chrX_17497873_17498103 chrX + chrX_17497505_17497746 chrX_17497505_17497728 chrX_17497189_17497504;chrX_17497747_17497828 96.00 96.30 95.65 80.95 100.00 100.00 93.94 95.12 93.44 91.67 100.00 95.12 94.74 100.00 96.00 93.75 95.83 95.24 96.00 97.83 96.00 83.33 100.00 100.00 94.12 100.00 100.00 100.00 62.50 94.12 93.55 100.00 94.44 94.29 87.50 85.00 93.75 96.15 100.00 96.77 90.00 98.08 100.00 100.00 93.75 94.44 93.75 100.00 97.44 92.59 97.44 95.24 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Dhod chr3R - chr3R_4478405_4478458 chr3R_4478404_4478405;chr3R_4478458_4478459 chr3R_4477113_4478404;chr3R_4478459_4479010 6.54 0.00 0.00 9.68 2.78 0.00 4.26 5.71 2.90 7.41 0.00 6.98 7.69 NA 6.90 9.68 5.88 7.69 0.00 5.63 0.00 7.41 10.71 8.82 5.26 11.76 9.09 4.17 16.67 9.09 21.88 7.41 9.09 6.25 0.00 NA 8.62 5.41 4.55 11.11 10.71 7.14 0.00 4.76 8.51 13.04 0.00 12.20 5.56 6.25 8.33 10.53 6.06 NA 0.00 6.25 6.82 5.88 N intron_retention slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,I_chr2R_20289332_20290093 chr2R - chr2R_20283680_20283755 chr2R_20283679_20283680;chr2R_20283755_20283756 chr2R_20283566_20283679;chr2R_20283756_20283824 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 53.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette Pfk,I_chr2R_5999081_6000140,E_chr2R_6001157_6001630 chr2R + chr2R_6000676_6002421;chr2R_6000676_6001630 chr2R_6000676_6001047;chr2R_6001157_6001630,chr2R_6001157_6002421 chr2R_6001048_6001156 chr2R_6000521_6000675;chr2R_6002422_6002610 57.79 60.27 57.50 60.00 55.56 48.57 60.32 47.17 59.77 53.85 62.50 58.57 NA 80.00 62.96 48.00 84.21 88.57 50.00 42.50 70.97 79.52 54.76 67.82 46.25 80.00 60.00 50.00 72.60 49.30 65.22 56.67 60.78 56.52 51.85 77.55 54.12 54.12 56.72 62.20 62.86 57.89 76.19 56.47 59.38 54.55 45.24 61.54 57.69 48.89 51.89 54.55 70.00 52.94 58.06 54.84 55.17 81.82 K jcn_only_AA CG10880,CG15386_CG42371 chr2L - chr2L_2215457_2215514;chr2L_2215460_2215514 chr2L_2215454_2215514 chr2L_2215515_2216288;chr2L_2215021_2215453 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA 4.55 0.00 NA NA NA 0.00 0.00 NA 3.12 NA NA NA NA NA NA NA NA NA 0.00 K jcn_only_AA CG30046 chr2R + chr2R_8202525_8202596 chr2R_8202525_8202583 chr2R_8202127_8202524;chr2R_8202597_8202796 100.00 97.50 97.83 98.18 100.00 97.06 95.83 98.72 98.88 100.00 97.22 98.21 96.88 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 NA 100.00 95.24 97.06 NA 98.25 100.00 100.00 95.24 98.18 100.00 96.00 100.00 100.00 94.95 100.00 100.00 100.00 100.00 100.00 97.22 97.12 100.00 98.00 100.00 100.00 NA 97.78 100.00 100.00 97.46 K intron_retention CG8079 chr2R + chr2R_11109931_11110001 chr2R_11109930_11109931;chr2R_11110001_11110002 chr2R_11109549_11109930;chr2R_11110002_11110367 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 4.35 NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 4.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 3.70 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 K jcn_only_AA tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563503_565232;chr3R_563461_565232 chr3R_563485_565232 chr3R_565233_565290;chr3R_563195_563460 1.22 NA NA 0.00 NA NA 13.33 3.45 3.64 NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 6.45 NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA 2.44 NA NA NA NA NA 0.00 NA NA NA K intron_retention gro chr3R + chr3R_21868622_21868716 chr3R_21868621_21868622;chr3R_21868716_21868717 chr3R_21868588_21868621;chr3R_21868717_21869101 77.53 81.82 NA 92.86 100.00 NA 91.67 93.33 74.07 NA NA 77.27 90.91 80.00 88.89 76.47 NA 63.64 NA 75.00 NA NA 78.95 69.23 88.89 70.00 68.75 72.73 63.64 50.00 76.92 NA NA 68.18 87.50 71.43 61.54 77.78 73.33 68.42 NA 72.22 87.50 82.35 NA NA NA 77.78 64.71 66.67 85.71 84.62 NA NA 85.71 80.00 90.00 NA K jcn_only_AA CG30372,RI_chr2R_4012976_4013037 chr2R - chr2R_4004526_4004669 chr2R_4004610_4004669 chr2R_4004670_4004789;chr2R_4003772_4004525 84.85 95.12 66.67 88.46 72.41 88.00 64.71 78.26 86.15 77.78 100.00 85.11 84.38 93.33 80.95 85.29 85.00 87.50 85.00 80.00 90.48 83.64 86.76 86.67 80.00 85.37 87.10 NA 84.85 82.76 90.32 80.95 91.18 85.37 83.33 82.22 91.67 85.37 84.78 70.27 87.80 81.25 NA 94.59 71.43 97.06 90.00 63.64 80.00 81.82 75.44 82.05 NA 80.00 78.38 78.79 NA 90.48 K alternative_acceptor RpS27A,Ip259 chr2L + chr2L_10408387_10409710 chr2L_10408387_10408738 chr2L_10408376_10408386;chr2L_10409711_10410051 46.12 56.86 34.12 37.73 43.00 39.38 44.80 34.30 36.66 57.63 36.40 38.17 33.15 40.74 32.23 37.98 35.79 39.24 34.30 34.14 34.31 68.28 71.17 49.20 45.99 23.60 60.95 72.41 90.38 79.59 36.52 63.27 74.55 31.39 78.88 82.87 71.42 64.62 46.12 68.34 82.08 33.85 37.83 78.98 47.73 81.17 61.13 80.55 35.61 41.65 78.88 56.33 65.44 83.59 36.47 52.55 40.56 75.97 K jcn_only_AD APC4,I_chrX_8978433_8978480,RI_chrX_8980352_8980400 chrX + chrX_8978203_8978269 chrX_8978209_8978269 chrX_8978270_8978432;chrX_8978032_8978202 69.93 NA NA NA NA NA NA NA 67.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 72.00 NA NA NA NA NA NA NA NA NA K intron_retention spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20343948_20345172 chr2L_20343947_20343948;chr2L_20345172_20345173 chr2L_20343743_20343947;chr2L_20345173_20345259 85.19 75.00 94.12 91.67 90.91 75.00 80.00 95.00 87.88 NA 100.00 84.62 72.73 91.67 75.00 75.00 84.62 73.33 93.33 84.00 88.89 71.43 74.07 58.82 69.23 100.00 80.00 90.91 70.00 72.22 96.15 NA 93.33 85.71 90.00 NA 69.23 80.00 76.47 94.12 NA 81.58 100.00 85.71 64.29 100.00 92.86 85.71 85.19 65.00 86.67 NA NA NA 80.00 92.31 92.86 NA K intron_retention Patj,CG12022 chr3L + chr3L_1800700_1800759 chr3L_1800699_1800700;chr3L_1800759_1800760 chr3L_1799015_1800699;chr3L_1800760_1802226 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette cora,I_chr2R_15125277_15130573,I_chr2R_15125940_15130208,I_chr2R_15129291_15129988 chr2R + chr2R_15125940_15130208 chr2R_15125940_15126293;chr2R_15128442_15128462;chr2R_15129291_15129678;chr2R_15129901_15130208 chr2R_15126294_15128441;chr2R_15128463_15129290;chr2R_15129679_15129900 chr2R_15125887_15125939;chr2R_15130209_15130308 100.00 100.00 100.00 99.81 100.00 100.00 100.00 100.00 100.00 99.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Trx-2,I_chr2L_9613459_9615301,I_chr2L_9613592_9615301,E_chr2L_9615344_9615833,I_chr2L_9615252_9615301 chr2L + chr2L_9613376_9615301;chr2L_9615252_9615301 chr2L_9613541_9615301 chr2L_9615302_9615343;chr2L_9613359_9613375 99.88 100.00 99.87 99.77 99.51 99.83 99.88 99.89 99.56 99.69 99.82 100.00 100.00 99.86 99.85 99.82 99.78 99.66 99.85 99.87 99.84 99.40 99.96 99.95 99.90 99.47 99.96 99.80 99.84 100.00 99.90 99.64 99.81 99.78 99.88 99.90 100.00 99.90 99.92 99.96 99.72 99.91 99.80 99.93 99.64 99.89 100.00 99.65 99.92 99.89 99.87 99.92 100.00 99.93 100.00 99.92 99.95 99.87 K alternative_donor CG31038,I_chr3R_25702915_25703648,I_chr3R_25705533_25722419,I_chr3R_25727788_25727905 chr3R + chr3R_25702915_25703648;chr3R_25702989_25703648;chr3R_25702895_25703648;chr3R_25702901_25703648;chr3R_25702838_25703648;chr3R_25702970_25703648 chr3R_25702897_25703648 chr3R_25703649_25703748;chr3R_25702831_25702837 0.00 0.00 0.00 0.00 NA 0.00 11.11 0.00 8.33 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 6.90 0.00 5.26 4.17 7.69 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 6.67 0.00 0.00 0.00 0.00 6.67 NA 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21308939_21309938 chr2L_21308938_21308939;chr2L_21309938_21309939 chr2L_21308288_21308938;chr2L_21309939_21309974 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention noncoding_10535,Ack chr3L + chr3L_4108984_4110497 chr3L_4108983_4108984;chr3L_4110497_4110498 chr3L_4108183_4108983;chr3L_4110498_4110683 0.00 3.45 NA NA NA 0.00 NA NA 0.00 NA NA 4.55 NA NA NA NA NA NA NA 0.00 NA 0.00 5.13 0.00 0.00 NA 7.41 0.00 NA NA NA NA NA 0.00 0.00 0.00 2.70 0.00 2.94 10.00 NA 5.71 NA 12.50 0.00 NA 10.00 NA 4.55 NA 16.67 0.00 NA NA NA NA NA NA K intron_retention CG40263,F_chr2RHet_1265687_1293040,F_chr2RHet_1298459_1298703,F_chr2RHet_1298459_1311408,F_chr2RHet_1298885_1299622,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1265687_1324445 chr2RHet_1265686_1265687;chr2RHet_1324445_1324446 chr2RHet_1265587_1265686;chr2RHet_1324446_1324530 5.56 NA NA NA NA NA 16.67 0.00 13.04 NA NA 13.04 NA NA NA 5.26 NA NA 11.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.56 NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA 5.88 NA NA NA NA NA NA NA NA 0.00 K cassette CG15673,I_chr2R_17497464_17498249,CG18870 chr2R - chr2R_17496572_17500287 chr2R_17496572_17497283;chr2R_17497464_17500287 chr2R_17497284_17497463 chr2R_17495997_17496571;chr2R_17500288_17500594 100.00 NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 100.00 100.00 100.00 NA NA 100.00 83.33 NA NA NA 100.00 NA NA NA 100.00 NA 87.50 100.00 100.00 NA NA 80.00 NA 100.00 NA 100.00 NA 100.00 100.00 NA NA NA NA NA NA NA K intron_retention CG6364,I_chr3R_20116610_20116825 chr3R + chr3R_20118692_20118850 chr3R_20118691_20118692;chr3R_20118850_20118851 chr3R_20118560_20118691;chr3R_20118851_20119088 96.72 100.00 95.83 97.30 100.00 100.00 100.00 100.00 96.77 94.74 100.00 96.15 NA 100.00 100.00 96.00 93.33 100.00 100.00 95.65 100.00 96.43 96.67 95.83 100.00 93.75 100.00 91.67 100.00 92.31 95.65 100.00 97.22 96.15 93.33 100.00 100.00 94.74 96.15 96.88 94.29 100.00 88.89 100.00 91.67 100.00 95.83 95.83 100.00 94.74 96.15 100.00 95.83 95.65 100.00 96.43 96.77 94.34 K intron_retention Eb1,I_chr2R_2642491_2642549 chr2R + chr2R_2642632_2642689 chr2R_2642631_2642632;chr2R_2642689_2642690 chr2R_2642550_2642631;chr2R_2642690_2643135 13.39 NA NA NA NA NA NA NA 21.43 NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA 25.00 42.86 4.76 NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 12.50 K intron_retention CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20825513_20825667 chr2L_20825512_20825513;chr2L_20825667_20825668 chr2L_20825471_20825512;chr2L_20825668_20825758 82.61 76.19 79.52 88.89 75.00 85.90 73.74 83.84 72.95 85.48 68.12 86.50 88.00 83.10 85.54 82.35 58.97 79.17 84.38 87.88 78.12 92.68 88.55 79.51 96.55 90.24 84.62 79.61 87.39 69.88 89.89 84.34 76.98 74.71 83.78 92.68 82.56 81.33 82.64 71.69 87.04 81.16 72.34 79.59 83.46 74.83 78.85 82.61 85.82 80.26 88.24 76.39 85.54 84.51 83.70 74.14 69.31 78.50 K jcn_only_AA UbcD2,noncoding_2473,CG6724 chr2L - chr2L_10766973_10767656 chr2L_10767013_10767656 chr2L_10767657_10767740;chr2L_10766908_10766972 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CDase chr3R + chr3R_26286512_26288536;chr3R_26286617_26288536;chr3R_26286611_26288536;chr3R_26286613_26288536 chr3R_26286631_26288536 chr3R_26288537_26288691;chr3R_26286221_26286511 0.00 NA NA 0.00 NA NA NA NA 0.00 0.00 NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 7.69 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 3.57 NA NA NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 K intron_retention Eps-15,I_chr2R_20660319_20660496 chr2R - chr2R_20659314_20659371 chr2R_20659313_20659314;chr2R_20659371_20659372 chr2R_20659248_20659313;chr2R_20659372_20659560 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG1347 chr3R + chr3R_1495515_1499211;chr3R_1496295_1499211 chr3R_1495452_1499211 chr3R_1499212_1502282;chr3R_1495435_1495451 0.00 0.00 0.00 7.69 6.67 6.67 2.56 4.35 0.00 12.50 0.00 17.78 7.41 4.00 0.00 2.56 0.00 5.88 3.57 4.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.05 4.76 4.76 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 4.76 3.57 0.00 0.00 8.33 0.00 4.55 0.00 4.55 0.00 0.00 0.00 4.17 0.00 0.00 0.00 K intron_retention Git chr2R - chr2R_6531100_6531161 chr2R_6531099_6531100;chr2R_6531161_6531162 chr2R_6530815_6531099;chr2R_6531162_6531247 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 2.17 5.13 0.00 9.76 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083522_8089184;chr2L_8083588_8089184;chr2L_8083637_8089184;chr2L_8083687_8089184 chr2L_8083458_8089184 chr2L_8089185_8089284;chr2L_8083444_8083457 0.00 NA 0.00 0.00 NA 0.00 0.00 2.27 0.00 5.00 NA 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.33 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 3.03 0.00 1.85 0.00 0.00 NA 0.00 NA 1.41 0.00 NA NA NA NA NA 2.08 NA NA 0.00 K alternative_donor CG42533,EI_chr2L_7473200_7473297,RI_chr2L_7473200_7473419,F_chr2L_7476906_7476978 chr2L - chr2L_7473200_7473297;chr2L_7473200_7473770;chr2L_7473200_7473419 chr2L_7473200_7473656 chr2L_7473100_7473199;chr2L_7473771_7473889 6.98 2.70 7.89 18.87 7.69 0.00 5.77 5.97 7.69 0.00 8.00 5.88 0.00 8.57 6.98 6.38 6.06 15.62 6.82 4.17 8.00 8.70 11.86 8.70 4.00 11.76 10.42 8.00 8.89 2.56 5.77 8.11 8.33 6.45 9.09 12.82 8.33 7.41 6.82 6.45 6.82 2.60 0.00 6.25 5.26 5.36 10.53 3.03 11.39 6.82 6.67 11.54 15.38 6.90 7.69 12.50 6.98 4.48 K intron_retention CG3847 chrX + chrX_6241443_6241499 chrX_6241442_6241443;chrX_6241499_6241500 chrX_6241334_6241442;chrX_6241500_6241502 88.68 90.24 88.10 95.59 90.91 87.10 88.46 89.33 83.47 86.67 83.78 91.76 82.00 86.67 88.89 87.38 97.56 83.33 89.55 85.42 86.11 73.47 92.45 90.00 92.86 93.75 92.73 78.12 87.27 78.95 88.68 89.29 84.09 93.42 87.80 95.24 90.20 86.84 81.63 78.87 98.25 93.02 91.49 89.09 64.81 91.40 85.11 91.15 86.96 85.11 91.30 82.05 89.19 90.91 91.94 82.69 75.86 89.55 K intron_retention CG4065,RI_chr2R_20024231_20024292,I_chr2R_20024873_20024921 chr2R - chr2R_20025295_20025383 chr2R_20025294_20025295;chr2R_20025383_20025384 chr2R_20024922_20025294;chr2R_20025384_20025494 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 4.00 0.00 3.70 NA 19.05 NA 29.41 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA N jcn_only_AD MAPk-Ak2,RI_chrX_5655618_5656137,I_chrX_5656715_5657427,I_chrX_5656715_5657893,I_chrX_5656715_5657974 chrX - chrX_5656678_5658141 chrX_5656678_5658126 chrX_5656615_5656677;chrX_5658142_5658214 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N intron_retention cno,I_chr3R_999718_999986,I_chr3R_999737_999777,I_chr3R_1003608_1005580,noncoding_14652,F_chr3R_1006551_1006778,I_chr3R_1006714_1006778 chr3R - chr3R_1003608_1009498 chr3R_1003607_1003608;chr3R_1009498_1009499 chr3R_1003508_1003607;chr3R_1009499_1009705 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA 100.00 100.00 NA 15.15 NA NA NA NA NA 100.00 100.00 100.00 NA NA NA NA NA NA NA NA 100.00 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA K multi_cassette AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9003790_9007675 chrX_9003790_9004650;chrX_9005039_9005114;chrX_9005177_9005419;chrX_9005562_9005630;chrX_9005820_9005886;chrX_9006126_9006195;chrX_9006273_9006782;chrX_9006801_9007675 chrX_9004651_9005038;chrX_9005115_9005176;chrX_9005420_9005561;chrX_9005631_9005819;chrX_9005887_9006125;chrX_9006196_9006272;chrX_9006783_9006800 chrX_9003721_9003789;chrX_9007676_9007775 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 94.74 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N multi_cassette Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16107821_16110644 chr3L_16107821_16107893;chr3L_16107944_16108768;chr3L_16108931_16109131;chr3L_16109720_16110644 chr3L_16107894_16107943;chr3L_16108769_16108930;chr3L_16109132_16109719 chr3L_16107721_16107820;chr3L_16110645_16111208 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 73.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563461_567573;chr3R_563503_567573 chr3R_563485_567573 chr3R_567574_568885;chr3R_563195_563460 11.11 10.00 17.86 10.00 20.00 25.00 20.69 13.04 8.54 6.67 18.18 11.94 6.67 11.43 6.45 5.88 12.00 13.33 15.15 15.71 12.50 7.41 7.69 3.45 12.50 15.62 9.09 6.25 14.81 20.83 8.33 0.00 2.78 7.69 31.25 5.00 4.76 13.64 20.00 11.11 17.39 11.48 12.50 4.00 14.29 4.35 13.33 6.06 6.15 0.00 22.92 3.57 38.10 30.00 11.11 8.00 3.45 3.45 K intron_retention iPLA2-VIA chr3L - chr3L_9856717_9856876 chr3L_9856716_9856717;chr3L_9856876_9856877 chr3L_9856421_9856716;chr3L_9856877_9857014 52.63 NA NA 46.15 NA NA 70.00 63.64 52.63 NA 54.55 52.94 NA NA NA 42.86 NA NA NA 62.50 NA 58.62 42.86 NA 41.67 45.45 NA NA 46.15 NA 50.00 NA 50.00 NA NA NA 54.55 NA 54.55 NA NA 56.25 NA NA NA NA NA NA 50.00 NA 30.77 NA NA NA 60.00 NA NA NA K intron_retention CG6845,I_chr3L_148414_148489 chr3L + chr3L_147647_147699 chr3L_147646_147647;chr3L_147699_147700 chr3L_147453_147646;chr3L_147700_147729 50.00 44.44 52.17 58.82 50.00 63.16 43.18 52.08 44.07 47.06 37.50 52.94 38.71 34.38 44.00 61.11 52.63 32.00 50.00 52.94 31.82 40.54 71.43 38.10 42.86 29.17 46.43 50.00 54.17 61.90 60.00 63.64 82.76 48.98 56.25 90.48 37.93 50.00 26.09 44.68 52.94 54.35 50.00 40.74 57.14 51.43 29.63 49.15 62.50 30.00 38.71 38.10 31.25 40.00 51.43 34.78 55.00 53.12 K intron_retention CG7145,I_chr3L_21832928_21833150,I_chr3L_21832932_21833106 chr3L - chr3L_21832932_21833150 chr3L_21832931_21832932;chr3L_21833150_21833151 chr3L_21832832_21832931;chr3L_21833151_21833168 35.29 NA 30.77 47.06 NA 30.77 28.00 31.82 31.25 NA NA 30.00 30.77 35.29 46.67 39.13 NA 15.38 42.86 25.00 33.33 NA 58.33 NA NA 26.32 NA NA 71.43 NA 35.29 NA 64.29 22.22 NA NA NA NA NA 71.43 53.85 47.37 NA NA NA 38.46 NA 47.06 31.03 NA 50.00 NA NA NA 35.29 NA NA 61.54 K jcn_only_AD ssp3 chr2L - chr2L_18942959_18943282 chr2L_18942959_18943276 chr2L_18940688_18942958;chr2L_18943283_18943901 93.34 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.00 NA NA NA NA NA NA 91.67 NA NA NA NA NA NA NA 95.83 NA NA 85.71 NA NA NA NA NA NA NA K intron_retention CG33523,RI_chr3L_5920177_5921323 chr3L + chr3L_5921397_5921636 chr3L_5921396_5921397;chr3L_5921636_5921637 chr3L_5921324_5921396;chr3L_5921637_5921740 0.00 0.00 0.00 0.00 0.00 1.59 1.15 0.73 0.65 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.83 0.00 1.09 0.00 0.00 0.00 1.28 0.00 0.00 0.00 K alternative_donor Rab30,I_chr2L_7032178_7032236 chr2L - chr2L_7032178_7032244;chr2L_7032178_7032236;chr2L_7032178_7032310 chr2L_7032178_7032321 chr2L_7032078_7032177;chr2L_7032322_7032336 50.00 46.15 44.44 50.00 NA 23.08 52.17 59.09 50.00 60.00 71.43 53.85 70.00 NA 45.45 31.25 33.33 53.85 28.57 44.00 36.36 26.67 47.37 50.00 40.00 63.64 56.25 75.00 50.00 56.25 33.33 50.00 36.84 54.55 NA 53.33 50.00 28.57 58.82 48.28 52.63 42.31 45.45 52.94 50.00 61.54 64.29 45.16 44.44 50.00 50.00 40.00 63.64 58.33 53.33 72.73 NA 45.45 K jcn_only_AD I_chr2L_6323791_6325172,Gef26,I_chr2L_6330719_6330770 chr2L + chr2L_6330564_6330770 chr2L_6330697_6330770 chr2L_6330771_6330832;chr2L_6330244_6330563 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA N jcn_only_AD I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17181974_17182126 chr3R - chr3R_17181974_17182268;chr3R_17181974_17200781 chr3R_17181974_17182039 chr3R_17181929_17181973 35.50 47.62 10.00 32.43 NA NA 58.62 42.31 41.03 NA NA 33.33 NA 40.00 NA NA NA NA NA 17.07 NA 75.00 NA 26.09 NA NA 35.00 NA NA NA 65.22 36.00 NA 42.86 NA NA NA NA 27.27 20.00 42.86 31.71 NA NA NA 22.22 39.13 4.55 51.28 37.93 30.43 NA NA 35.00 NA NA 73.91 14.71 K intron_retention CG31360 chr3R + chr3R_13511073_13511134 chr3R_13511072_13511073;chr3R_13511134_13511135 chr3R_13510733_13511072;chr3R_13511135_13511529 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.50 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ash2 chr3R + chr3R_20477353_20477582 chr3R_20477352_20477353;chr3R_20477582_20477583 chr3R_20477093_20477352;chr3R_20477583_20477963 1.97 0.00 2.94 7.55 0.00 2.38 0.00 0.00 2.74 NA 0.00 15.00 0.00 0.00 0.00 0.00 4.35 0.00 3.45 0.00 0.00 10.42 5.71 4.44 4.17 10.34 2.70 7.69 11.76 0.00 2.38 0.00 0.00 3.77 0.00 0.00 0.00 9.09 5.88 1.64 0.00 4.48 0.00 4.35 0.00 1.67 3.57 1.41 2.99 0.00 2.27 6.25 0.00 0.00 4.26 2.56 3.77 0.00 K intron_retention CG10433 chr2R - chr2R_17493699_17493972 chr2R_17493698_17493699;chr2R_17493972_17493973 chr2R_17493181_17493698;chr2R_17493973_17494122 2.77 2.07 2.63 5.35 1.72 2.07 5.28 2.68 3.01 2.77 3.91 2.52 2.47 2.70 3.14 2.49 2.83 3.61 14.02 2.16 1.77 4.80 4.32 3.89 4.38 4.29 4.37 12.68 6.70 2.56 2.08 1.36 1.22 1.86 3.89 4.06 3.52 2.68 3.39 3.62 2.98 2.62 3.25 3.71 1.59 1.60 2.47 2.59 3.10 5.51 3.55 3.99 1.61 2.61 2.54 2.70 2.05 1.00 K intron_retention mbf1,RI_chr3L_16568077_16568816 chr3L + chr3L_16568448_16568816 chr3L_16568447_16568448;chr3L_16568816_16568817 chr3L_16568287_16568447;chr3L_16568817_16568916 1.13 1.58 0.68 1.65 1.26 2.05 1.60 1.24 1.49 1.45 0.65 0.89 2.36 1.61 1.49 1.72 1.38 1.85 0.00 1.55 1.39 3.21 1.13 0.73 1.43 1.88 2.25 1.68 2.31 0.00 1.76 0.00 0.81 0.84 0.78 0.56 0.99 0.89 0.00 1.36 0.88 1.88 0.74 0.00 1.50 0.58 0.81 0.82 1.17 1.39 0.00 0.00 0.00 0.00 0.50 0.86 0.75 0.70 K intron_retention Dif,dorsal,RI_chr2L_17438018_17439189,I_chr2L_17442335_17442399,FI_chr2L_17449369_17450215,RI_chr2L_17450002_17450219 chr2L - chr2L_17437324_17437418 chr2L_17437323_17437324;chr2L_17437418_17437419 chr2L_17436842_17437323;chr2L_17437419_17438017 0.00 0.00 1.12 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.40 0.00 0.00 1.16 0.92 0.00 0.00 0.00 0.94 0.00 0.00 0.62 1.43 0.00 0.00 3.03 2.38 0.00 0.00 0.85 0.00 0.00 1.92 0.96 0.00 0.00 0.00 0.52 0.59 0.00 0.66 0.00 0.00 0.00 0.37 0.65 0.00 1.91 0.69 0.00 0.00 0.00 0.60 1.98 0.00 0.00 0.00 K intron_retention B52,E_chr3R_9488770_9491174 chr3R + chr3R_9487165_9487423 chr3R_9487164_9487165;chr3R_9487423_9487424 chr3R_9487022_9487164;chr3R_9487424_9487581 21.05 35.71 NA NA NA NA 35.29 NA 40.00 15.00 NA 31.03 NA 35.71 12.50 30.43 NA NA 31.25 19.23 NA 23.08 23.33 20.00 NA NA 8.70 NA 31.58 42.86 13.33 NA NA 14.29 20.00 16.67 22.22 16.67 22.73 18.18 40.00 31.82 NA 14.29 14.29 17.39 15.15 9.52 22.73 21.05 15.62 28.57 10.00 26.09 NA 13.64 21.43 NA K cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27707594_27784756 chr3R_27707594_27771343;chr3R_27771381_27784756 chr3R_27771344_27771380 chr3R_27707494_27707593;chr3R_27784757_27784846 0.00 NA NA 4.55 0.00 NA 0.00 0.00 0.00 NA 0.00 2.78 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.94 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 K jcn_only_AA Marf,I_chrX_6263726_6263783 chrX + chrX_6263726_6263825 chrX_6263726_6263783 chrX_6263626_6263725;chrX_6263826_6263883 0.00 0.00 0.00 1.47 0.00 2.56 2.08 1.96 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 3.03 0.00 2.13 1.23 0.00 0.00 0.00 0.00 0.00 2.94 0.88 1.52 0.00 0.00 3.23 1.61 0.00 2.74 0.00 0.00 0.52 4.55 0.56 0.00 0.00 0.00 0.00 1.75 0.00 1.47 2.92 2.86 1.72 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 N jcn_only_AD CG11151 chrX + chrX_13634146_13634710;chrX_13634652_13634710 chrX_13634528_13634710 chrX_13634711_13635156;chrX_13633982_13634145 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Moe,I_chrX_8774434_8775874,I_chrX_8774434_8791759 chrX - chrX_8774434_8785594 chrX_8774433_8774434;chrX_8785594_8785595 chrX_8774334_8774433;chrX_8785595_8785656 0.94 0.89 1.15 0.82 1.73 0.75 1.48 1.13 1.11 0.77 1.02 1.01 0.87 1.64 1.31 2.10 1.13 1.37 0.94 0.65 0.94 1.60 0.89 0.54 1.14 1.45 2.07 1.05 1.24 1.36 1.17 0.00 1.30 1.38 0.84 1.68 0.88 0.46 0.63 0.74 0.28 1.07 1.18 0.72 0.20 0.27 0.00 0.96 0.80 0.53 1.17 0.52 0.00 0.00 1.11 0.38 0.00 0.36 K jcn_only_AD pcs,F_chr2R_10877121_10877189 chr2R + chr2R_10868885_10877057 chr2R_10869329_10877057 chr2R_10877058_10877120;chr2R_10868782_10868884 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 96.88 NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 95.83 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 K jcn_only_AD Mtch,RI_chr3L_184729_185366,E_chr3L_185249_186012,EI_chr3L_185308_185366,I_chr3L_185367_185925 chr3L + chr3L_184729_185366;chr3L_185308_185366 chr3L_185304_185366 chr3L_185367_185441;chr3L_184713_184728 99.40 99.32 100.00 99.57 99.29 99.38 99.54 99.26 99.08 97.44 99.25 99.59 99.29 99.30 100.00 99.19 98.57 100.00 99.49 99.33 100.00 99.39 100.00 99.56 100.00 100.00 99.47 98.63 98.08 98.66 97.02 100.00 99.59 99.20 99.12 100.00 99.53 99.40 99.47 99.31 99.56 99.68 98.61 99.40 100.00 99.29 100.00 99.61 99.01 98.81 99.45 98.56 100.00 98.88 99.51 100.00 98.37 98.99 K jcn_only_AD CG1640,RI_chrX_13265127_13267895,I_chrX_13265553_13267895,I_chrX_13265618_13267895,RI_chrX_13266680_13267895,RI_chrX_13267529_13267895,I_chrX_13271541_13271890 chrX + chrX_13265560_13267895;chrX_13265248_13267895;chrX_13265094_13267895;chrX_13265295_13267895 chrX_13265401_13267895 chrX_13267896_13267973;chrX_13265065_13265093 22.86 14.81 26.15 20.00 26.32 11.11 27.27 30.14 29.82 31.43 20.00 30.26 20.69 36.67 20.75 13.33 25.00 20.59 18.52 20.65 14.29 34.85 42.11 29.09 18.75 24.39 23.81 25.81 20.97 16.39 16.67 20.93 15.56 22.86 33.33 28.95 32.56 34.33 22.67 21.21 13.16 25.30 22.73 27.08 9.09 20.59 18.42 13.85 16.67 36.73 25.76 38.64 22.50 37.50 26.79 29.27 27.03 11.93 K intron_retention CG8031 chr3R - chr3R_8835493_8836853 chr3R_8835492_8835493;chr3R_8836853_8836854 chr3R_8835411_8835492;chr3R_8836854_8837007 7.27 4.92 0.00 9.68 6.25 12.00 15.00 7.27 8.33 7.69 3.45 4.00 9.30 11.11 11.63 11.76 3.23 13.89 5.00 11.32 6.25 3.09 7.87 6.52 16.67 0.00 14.04 8.77 16.33 6.67 9.52 2.17 5.49 12.28 9.76 15.79 3.31 8.43 3.96 8.11 3.45 7.95 6.90 8.00 0.00 6.56 6.67 5.13 9.23 5.00 4.35 9.52 0.00 5.77 8.89 6.35 6.06 7.55 K intron_retention dlg1,I_chrX_11298230_11299306 chrX + chrX_11284072_11284263 chrX_11284071_11284072;chrX_11284263_11284264 chrX_11284036_11284071;chrX_11284264_11284573 99.24 100.00 90.32 98.00 95.24 100.00 100.00 98.21 100.00 80.00 95.00 98.44 100.00 96.97 97.37 96.43 96.88 100.00 100.00 98.48 100.00 100.00 98.21 100.00 96.67 95.00 100.00 100.00 96.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 96.43 97.06 96.00 100.00 98.46 95.83 96.43 NA 100.00 100.00 100.00 98.25 100.00 96.61 100.00 94.44 100.00 95.00 100.00 94.12 100.00 K intron_retention CG10992,RI_chrX_13675767_13676018 chrX - chrX_13675767_13675842 chrX_13675766_13675767;chrX_13675842_13675843 chrX_13675699_13675766;chrX_13675843_13675938 0.24 0.47 0.00 0.54 0.00 0.49 0.34 0.16 0.27 0.00 0.00 0.67 0.00 0.57 0.00 0.42 0.21 0.00 0.00 0.26 0.00 1.27 1.12 1.17 0.00 0.52 2.26 1.61 0.44 0.00 1.35 0.00 0.00 0.34 0.00 0.00 0.85 0.49 0.74 0.95 0.00 0.24 0.85 0.00 0.00 0.94 0.00 0.00 0.14 0.46 0.51 0.00 0.00 0.00 0.00 0.30 0.56 0.00 K intron_retention CG7530,I_chr3R_10556352_10557136,eff chr3R - chr3R_10556352_10557105 chr3R_10556351_10556352;chr3R_10557105_10557106 chr3R_10556252_10556351;chr3R_10557106_10557231 78.95 90.91 55.56 76.92 90.00 NA 91.67 82.35 80.77 90.00 NA 62.50 100.00 71.43 80.00 80.95 100.00 94.12 69.23 73.53 91.67 NA 75.00 64.29 NA 71.43 82.35 70.00 77.78 66.67 81.82 73.33 100.00 81.25 61.54 94.74 100.00 100.00 NA 75.00 93.75 78.95 NA NA 85.00 75.00 75.00 80.00 74.07 NA 76.92 NA 70.00 63.64 87.50 NA 69.23 77.14 K jcn_only_AD Tak1,I_chrX_20388150_20389255 chrX - chrX_20388150_20392250;chrX_20388150_20388725 chrX_20388150_20389255 chrX_20388050_20388149;chrX_20392251_20392299 3.39 1.91 1.77 4.24 3.51 4.21 2.22 2.26 1.74 1.94 0.88 2.63 5.43 1.92 1.83 1.75 3.85 4.35 4.31 1.67 0.79 7.69 4.27 0.65 0.96 0.94 2.47 6.38 4.79 2.13 2.96 4.12 7.62 6.36 4.85 0.00 4.86 4.82 3.39 2.73 2.06 3.56 1.90 1.40 3.42 7.69 5.56 10.42 2.79 8.70 3.39 3.03 3.12 5.10 3.97 4.52 1.73 4.92 K intron_retention Rho1,I_chr2R_11990455_11992537,RI_chr2R_11991687_11992537 chr2R + chr2R_11990398_11991115 chr2R_11990397_11990398;chr2R_11991115_11991116 chr2R_11990386_11990397;chr2R_11991116_11991279 98.09 99.21 97.80 97.87 97.44 98.09 98.21 97.49 97.02 98.04 98.33 97.92 97.03 98.94 98.02 97.63 98.70 97.67 98.42 98.27 97.60 98.48 99.19 98.33 98.92 98.18 98.58 95.00 95.14 99.36 98.30 96.99 96.95 97.41 96.41 98.25 98.21 98.11 97.32 98.18 97.42 97.72 97.36 99.62 98.84 97.55 97.89 97.39 98.66 98.37 97.78 98.68 99.07 99.18 97.14 98.61 98.19 96.55 K intron_retention I_chr3R_16141663_16144698,CG5077,I_chr3R_16147605_16147670 chr3R + chr3R_16147603_16147670 chr3R_16147602_16147603;chr3R_16147670_16147671 chr3R_16147505_16147602;chr3R_16147671_16147746 0.36 0.00 0.00 0.67 0.44 0.33 0.00 1.04 0.67 0.00 0.00 0.00 1.29 0.00 0.00 0.19 0.00 0.26 0.75 0.36 0.78 0.67 0.45 0.51 0.39 0.27 2.03 1.82 1.14 0.42 0.00 0.75 0.63 0.00 0.58 0.98 0.33 0.00 0.00 0.40 0.23 0.48 0.00 0.58 0.00 0.41 0.00 0.36 0.50 0.00 0.47 0.86 0.33 0.00 0.47 0.00 0.31 0.35 K intron_retention CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3087256_3087310 chr3L_3087255_3087256;chr3L_3087310_3087311 chr3L_3087133_3087255;chr3L_3087311_3087440 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6808,REI_chr3R_7450909_7451196,CG6813,I_chr3R_7463337_7463512,I_chr3R_7468928_7472509 chr3R - chr3R_7451348_7451419 chr3R_7451347_7451348;chr3R_7451419_7451420 chr3R_7451310_7451347;chr3R_7451420_7451595 41.67 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA 54.55 NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 45.45 NA NA NA 41.67 NA K jcn_only_AA CG17494 chr2L + chr2L_22471985_22472552;chr2L_22471985_22472623 chr2L_22471985_22472618 chr2L_22471978_22471984;chr2L_22472624_22473865 0.00 1.28 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 1.15 0.00 0.00 1.10 0.00 1.52 1.04 0.47 0.98 0.00 0.00 0.00 0.00 1.03 1.47 0.00 1.27 1.96 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention insc,sktl chr2R - chr2R_16717899_16719288 chr2R_16717898_16717899;chr2R_16719288_16719289 chr2R_16714925_16717898;chr2R_16719289_16719576 0.00 0.00 0.00 12.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 4.00 0.00 1.72 0.00 0.00 4.65 13.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10254 chr3R - chr3R_19518068_19518139 chr3R_19518067_19518068;chr3R_19518139_19518140 chr3R_19517793_19518067;chr3R_19518140_19518534 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA NA 90.91 NA NA NA 100.00 NA NA NA 90.91 NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention CG31249 chr3R - chr3R_13512084_13512232 chr3R_13512083_13512084;chr3R_13512232_13512233 chr3R_13511411_13512083;chr3R_13512233_13512559 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 9.76 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10038 chr3R - chr3R_8176188_8176265 chr3R_8176187_8176188;chr3R_8176265_8176266 chr3R_8176096_8176187;chr3R_8176266_8176360 25.00 21.43 NA 8.00 NA NA 25.00 22.22 13.51 NA NA 55.56 NA 35.71 30.77 23.53 NA NA NA 22.73 NA NA 30.77 NA NA 47.06 30.77 NA NA NA NA NA NA 18.75 NA 45.45 NA NA NA NA NA 32.00 29.41 NA NA NA 30.77 NA 19.05 NA 11.76 NA NA NA NA 25.00 NA NA K alternative_last_exon CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4988849_4990307 chr2L_4988849_4989389 chr2L_4990308_4990450 chr2L_4989390_4989458 chr2L_4988734_4988848 71.96 74.07 80.00 93.75 58.33 54.55 73.08 76.47 67.65 37.84 NA 62.50 46.15 83.33 73.68 61.54 81.82 73.33 57.14 64.00 69.23 80.77 71.43 60.00 73.81 64.29 59.18 57.69 50.77 79.41 80.00 50.00 46.67 70.59 68.00 90.00 71.70 77.27 70.18 76.39 75.00 74.36 76.92 55.81 54.55 82.61 68.42 72.22 87.50 60.00 78.79 76.19 80.00 84.21 68.75 79.17 72.73 37.50 K intron_retention Syx7,I_chr3L_21439901_21439962 chr3L + chr3L_21439613_21439962 chr3L_21439612_21439613;chr3L_21439962_21439963 chr3L_21439543_21439612;chr3L_21439963_21440062 0.60 0.00 0.00 0.00 0.00 0.00 1.85 0.00 2.05 0.00 0.00 3.05 1.61 0.00 3.12 2.91 0.00 0.00 0.00 2.17 0.00 0.69 0.93 0.00 0.00 0.00 2.47 1.75 2.60 0.00 1.43 0.00 1.59 0.00 1.82 2.90 1.87 2.90 0.00 1.96 2.38 1.47 0.00 2.02 0.00 0.00 0.00 2.80 2.99 1.39 1.15 4.08 0.00 0.00 2.13 0.00 0.00 0.60 K intron_retention CG3714,I_chr2L_4190825_4191774,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,I_chr2L_4196780_4197306,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4196780_4197964 chr2L_4196779_4196780;chr2L_4197964_4197965 chr2L_4196715_4196779;chr2L_4197965_4198000 36.36 NA NA 50.00 41.67 NA 55.56 40.00 28.57 NA NA 36.84 NA 58.33 25.00 30.56 41.67 NA 29.41 31.58 NA 35.71 37.50 NA NA NA 60.00 NA NA NA 29.17 NA NA 33.33 NA 90.91 NA NA NA 36.36 31.82 52.63 36.36 50.00 NA 35.71 NA 22.73 37.50 NA NA NA NA NA NA NA NA 18.18 K intron_retention Gel,RI_chr3R_62662_62721,RI_chr3R_62666_63346,I_chr3R_62933_63346,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_61047_61809 chr3R_61046_61047;chr3R_61809_61810 chr3R_61015_61046;chr3R_61810_61870 13.33 NA NA NA NA NA NA 15.38 6.67 NA NA NA NA 13.33 NA 17.65 NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG3368,Hmu chr3R + chr3R_23111750_23111807 chr3R_23111749_23111750;chr3R_23111807_23111808 chr3R_23109680_23111749;chr3R_23111808_23113170 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 2.50 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive CG14425,Sxl,CG14425_Sxl,CEFI_chrX_6981717_6984166,CEF_chrX_6984538_6992033 chrX - chrX_6981693_6985706,chrX_6986156_6992033 chrX_6981693_6982610,chrX_6982783_6992033 chrX_6985707_6986155 chrX_6982611_6982782 chrX_6981647_6981692;chrX_6992034_6992068 60.00 NA NA 80.00 NA 66.67 NA 50.00 75.00 NA NA 50.00 NA NA 75.00 NA NA NA 60.00 NA 50.00 60.00 66.67 80.00 NA 60.00 66.67 NA NA 50.00 NA NA 50.00 66.67 NA 50.00 NA NA 40.00 85.71 NA 42.86 NA NA NA 66.67 NA NA 50.00 71.43 40.00 NA NA 50.00 75.00 NA NA 60.00 K alternative_donor Aldh-III,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3357578_3357898 chr2R_3357578_3357636 chr2R_3357478_3357577;chr2R_3357899_3358120 3.37 1.72 2.13 1.98 4.11 3.66 5.80 4.23 4.68 7.14 3.39 4.12 4.11 4.76 5.77 3.37 4.88 13.64 6.10 3.26 1.41 46.43 3.10 1.03 3.64 4.11 5.10 0.00 2.70 2.53 7.96 4.08 2.56 4.72 2.60 2.94 3.57 1.19 2.52 3.92 1.64 4.02 2.74 2.35 2.44 2.88 1.89 4.76 4.23 4.29 2.73 2.78 1.54 1.12 3.67 1.98 2.15 0.00 K alternative_acceptor Usp7,I_chrX_11919055_11919146,I_chrX_11922059_11922456 chrX - chrX_11919091_11919146;chrX_11919055_11919146 chrX_11919079_11919146 chrX_11919147_11919211;chrX_11918989_11919054 27.03 13.95 25.93 23.81 27.03 30.00 37.50 25.53 23.89 28.57 26.47 29.55 28.26 27.78 24.07 27.03 26.92 29.79 29.69 31.31 25.64 37.74 8.33 28.57 35.90 30.00 18.42 14.29 40.74 24.32 28.85 29.17 25.42 19.10 31.25 38.89 23.40 27.03 20.45 25.00 43.75 25.23 25.64 20.41 27.59 27.08 23.40 37.50 29.90 18.18 25.00 24.14 26.32 30.00 23.08 28.12 23.40 35.42 K jcn_only_AA CG6845,I_chr3L_148414_148465,I_chr3L_148414_148475,I_chr3L_148414_148489 chr3L + chr3L_148414_148475;chr3L_148414_148461;chr3L_148414_148489 chr3L_148414_148465 chr3L_148350_148413;chr3L_148490_148555 4.17 5.41 2.94 3.61 3.33 2.78 5.66 4.17 1.74 4.55 5.56 5.33 6.67 4.35 2.78 5.56 2.27 0.00 1.75 2.22 14.29 4.55 8.70 6.45 NA 2.08 NA NA 0.00 6.45 2.27 NA 4.17 1.11 0.00 NA 0.00 0.00 5.00 4.26 3.12 4.05 4.26 4.35 0.00 10.87 0.00 8.11 5.71 4.65 3.23 5.88 NA NA 2.74 5.88 3.23 6.98 K cassette I_chr2L_71805_74902,galectin,I_chr2L_72082_75077,RI_chr2L_72978_75077,RI_chr2L_73693_75077,RI_chr2L_74573_75077 chr2L + chr2L_73693_74902 chr2L_73693_73819;chr2L_73898_74902 chr2L_73820_73897 chr2L_73593_73692;chr2L_74903_75002 41.67 16.67 NA 64.71 NA NA 46.67 33.33 26.09 NA NA 55.56 NA NA 36.36 NA NA 69.23 30.00 55.56 NA NA NA NA NA NA NA NA NA NA 56.25 NA NA 26.32 NA NA 36.36 NA NA 41.67 NA 38.89 NA 38.89 NA 50.00 NA NA 41.67 NA NA NA NA NA NA NA 55.56 66.67 K cassette fry,I_chr3L_9636648_9656042 chr3L - chr3L_9657345_9660801 chr3L_9657345_9658655;chr3L_9658800_9660801 chr3L_9658656_9658799 chr3L_9657177_9657344;chr3L_9660802_9660984 1.61 1.56 3.85 1.56 3.03 0.00 7.27 1.43 0.87 0.00 0.00 3.19 0.00 2.38 1.64 1.72 2.56 0.00 0.00 3.80 1.82 2.11 3.00 1.39 2.38 0.00 5.56 0.00 4.55 1.19 2.50 0.00 0.00 1.75 0.00 1.61 1.54 1.41 2.17 2.80 3.85 1.09 0.00 0.00 3.57 0.00 0.00 0.00 1.98 3.70 2.75 1.92 0.00 3.57 2.50 0.00 3.12 0.00 K alternative_acceptor CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3018025_3018163;chr2L_3018082_3018163;chr2L_3018038_3018163 chr2L_3018018_3018163 chr2L_3018164_3018185;chr2L_3017982_3018017 0.00 5.56 4.00 2.94 0.00 0.00 2.70 1.92 1.52 0.00 7.69 0.00 0.00 3.70 0.00 2.78 0.00 0.00 0.00 4.17 0.00 4.55 5.26 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 7.14 10.00 0.00 5.56 0.00 0.00 0.00 0.00 6.67 11.11 2.94 5.26 4.00 7.69 4.35 0.00 8.33 0.00 0.00 0.00 0.00 25.00 0.00 3.70 0.00 0.00 14.29 K jcn_only_AD CG5585,I_chr3L_20339275_20339338,I_chr3L_20340649_20340712 chr3L - chr3L_20339275_20339343 chr3L_20339275_20339338 chr3L_20339175_20339274;chr3L_20339344_20339438 0.00 0.00 11.11 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 1.85 0.00 0.00 0.00 0.00 NA 3.23 0.00 2.74 3.23 2.70 0.00 2.17 NA 0.00 0.00 NA 4.76 0.00 2.08 0.00 0.00 0.00 4.35 0.00 5.13 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 3.03 0.00 1.52 0.00 0.00 NA 4.55 0.00 2.44 2.70 0.00 0.00 K intron_retention osa,I_chr3R_13542657_13542834,I_chr3R_13542657_13543500,I_chr3R_13542657_13543662,I_chr3R_13542657_13543668,I_chr3R_13543730_13543786 chr3R - chr3R_13542657_13543677 chr3R_13542656_13542657;chr3R_13543677_13543678 chr3R_13542557_13542656;chr3R_13543678_13543729 0.00 4.26 0.00 0.00 0.00 6.06 0.00 4.44 1.52 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 9.86 1.98 0.00 0.00 2.50 0.00 0.00 7.89 0.00 4.65 0.00 1.04 0.00 4.44 0.00 3.45 0.00 0.00 1.40 0.00 0.00 0.00 1.27 0.00 3.12 0.00 1.43 1.68 0.00 0.00 0.00 0.00 NA 0.00 8.00 0.00 0.00 K intron_retention CG1354,I_chrX_9672972_9673084 chrX + chrX_9672833_9672900 chrX_9672832_9672833;chrX_9672900_9672901 chrX_9672779_9672832;chrX_9672901_9672946 7.42 NA NA 0.00 NA NA NA NA 7.14 NA NA 12.50 NA NA 7.69 16.00 NA NA NA 5.26 NA NA NA NA NA NA 35.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 4.76 NA NA NA NA NA 11.76 NA NA NA K jcn_only_AA Pur-alpha,I_chr4_581447_585166 chr4 + chr4_580927_580997 chr4_580927_580974 chr4_580745_580926;chr4_580998_581033 100.00 NA NA NA NA NA NA 100.00 96.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention roq,CG4753 chr3L - chr3L_16370111_16370175 chr3L_16370110_16370111;chr3L_16370175_16370176 chr3L_16367960_16370110;chr3L_16370176_16370338 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor RanBPM chr2R + chr2R_6322096_6322156;chr2R_6322096_6322141 chr2R_6322096_6322150 chr2R_6321932_6322095;chr2R_6322157_6322290 51.72 49.15 54.17 44.74 54.84 50.00 46.75 59.38 53.09 50.00 45.45 51.19 52.38 60.98 46.43 50.00 56.67 62.16 46.15 46.15 52.38 57.14 53.25 51.85 51.16 51.11 58.57 56.25 51.61 50.00 50.75 47.06 57.89 50.75 62.22 62.75 51.72 52.00 50.75 56.94 51.72 52.69 42.86 50.00 53.85 54.35 55.41 54.17 48.86 60.00 50.79 61.54 46.00 50.72 40.98 54.55 51.61 52.63 K jcn_only_AD CG14476,I_chrX_21474758_21476200,I_chrX_21475620_21475965 chrX - chrX_21475620_21476200;chrX_21475620_21476178 chrX_21475620_21476104 chrX_21475520_21475619;chrX_21476201_21476209 0.00 3.70 0.00 0.72 0.00 0.00 0.83 0.58 0.00 2.94 0.00 1.16 1.49 0.00 3.19 0.00 0.00 1.85 0.00 1.75 1.37 4.35 0.00 1.85 0.00 1.14 0.00 0.00 3.57 NA 1.08 NA NA 0.00 3.33 0.00 0.00 7.50 2.56 0.00 NA 0.00 1.41 0.00 NA 0.00 0.00 NA 0.00 0.00 1.47 0.00 0.00 4.35 0.00 0.00 2.86 0.00 K alternative_acceptor csul chr2R + chr2R_12152628_12152704;chr2R_12152628_12152671 chr2R_12152628_12152686 chr2R_12152244_12152627;chr2R_12152705_12153131 65.00 63.64 70.00 64.71 66.67 61.90 53.33 66.67 67.31 55.56 60.00 61.76 58.82 62.50 68.00 57.14 57.14 76.00 63.64 69.05 66.67 62.50 79.31 68.00 45.45 55.00 84.62 76.67 57.14 76.00 60.00 62.50 75.00 60.00 65.22 68.42 71.05 69.57 59.26 65.71 53.85 65.79 57.14 60.00 65.22 65.00 71.43 66.67 55.88 68.42 62.50 64.29 72.73 60.00 65.00 72.73 68.97 68.75 K intron_retention Ptp10D,CEF_chrX_11516219_11517862,I_chrX_11516225_11516345 chrX + chrX_11516219_11517862 chrX_11516218_11516219;chrX_11517862_11517863 chrX_11516125_11516218;chrX_11517863_11517962 100.00 NA NA 100.00 NA NA 100.00 93.75 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA 92.31 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 92.31 NA NA NA NA NA 100.00 NA NA NA K alternative_acceptor 14-3-3epsilon,I_chr3R_14068632_14073155,RI_chr3R_14074062_14074138,I_chr3R_14074016_14074138 chr3R + chr3R_14073874_14073954;chr3R_14073874_14073939;chr3R_14073874_14073942 chr3R_14073874_14073936 chr3R_14073693_14073873;chr3R_14073955_14074015 26.29 23.54 27.91 24.37 25.39 24.91 24.50 27.41 23.75 26.67 24.09 26.14 25.83 27.21 26.64 27.13 26.61 27.48 26.88 27.27 24.04 28.70 23.42 23.53 29.14 31.21 16.40 17.98 26.69 26.29 25.43 27.51 28.42 27.40 27.24 38.24 22.60 24.07 23.93 30.29 31.29 26.07 25.68 25.31 25.00 29.01 26.33 31.02 26.51 23.31 22.96 27.29 25.61 25.77 26.67 24.49 22.20 27.54 K intron_retention CG4612 chr2R - chr2R_20413175_20413237 chr2R_20413174_20413175;chr2R_20413237_20413238 chr2R_20412297_20413174;chr2R_20413238_20413525 2.97 0.00 2.60 14.29 0.00 2.38 2.11 3.70 3.48 0.00 3.39 1.96 0.00 0.00 0.00 2.97 4.48 1.82 2.82 3.10 0.00 25.93 7.81 0.00 12.20 7.14 0.00 5.00 18.57 2.50 1.35 0.00 3.09 2.61 3.57 8.22 1.92 6.25 8.33 2.99 5.69 0.79 3.39 2.74 4.11 1.15 4.88 0.00 2.65 6.06 10.20 6.52 4.26 0.00 1.56 4.88 3.57 2.53 K alternative_acceptor Utx chr2L - chr2L_10275385_10275448 chr2L_10275388_10275448 chr2L_10275449_10275629;chr2L_10275127_10275384 66.67 68.75 80.00 53.85 80.00 60.00 70.00 79.17 53.33 NA NA 52.94 45.45 50.00 66.67 56.00 66.67 41.67 69.23 52.00 45.45 64.29 58.82 50.00 87.50 80.00 66.67 NA 66.67 72.73 72.22 NA 66.67 56.52 66.67 90.00 53.33 72.73 63.64 60.00 54.55 68.18 36.36 75.00 NA 66.67 54.55 55.56 66.67 66.67 52.63 88.89 NA NA 61.54 61.54 66.67 66.67 K multi_cassette gish,I_chr3R_12125412_12126290 chr3R + chr3R_12123068_12126966 chr3R_12123068_12123766;chr3R_12123845_12124191;chr3R_12124273_12125312;chr3R_12125412_12126966 chr3R_12123767_12123844;chr3R_12124192_12124272;chr3R_12125313_12125411 chr3R_12122897_12123067;chr3R_12126967_12127073 100.00 95.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 93.75 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 97.06 100.00 94.12 100.00 100.00 100.00 74.47 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.39 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 96.55 95.45 100.00 100.00 100.00 100.00 K jcn_only_AD Axs,RI_chrX_16575605_16575790,RI_chrX_16575870_16575942 chrX - chrX_16575605_16575942 chrX_16575605_16575790 chrX_16575505_16575604;chrX_16575943_16576042 3.88 3.45 0.00 5.26 0.00 13.04 1.89 7.69 0.00 NA 3.03 6.82 0.00 NA 6.25 0.00 3.70 3.12 2.86 1.25 0.00 5.17 6.12 2.86 NA 0.00 14.29 NA 12.12 4.17 4.88 25.00 NA 3.92 13.64 0.00 2.78 NA 6.06 2.50 14.29 3.57 NA 4.65 11.11 13.89 0.00 NA 7.27 8.11 6.52 8.33 3.85 13.04 3.23 3.85 0.00 NA K intron_retention CG12206,I_chrX_3367405_3367523 chrX - chrX_3367405_3368173 chrX_3367404_3367405;chrX_3368173_3368174 chrX_3367305_3367404;chrX_3368174_3368179 0.00 5.56 0.00 8.33 NA NA 16.67 11.76 13.33 NA NA 0.00 NA NA NA 14.29 NA NA 25.00 35.71 NA 0.00 0.00 0.00 5.56 NA 10.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 3.57 0.00 0.00 0.00 0.00 NA 18.75 NA 0.00 NA NA 0.00 0.00 46.15 0.00 7.14 0.00 0.00 NA 6.67 NA 0.00 0.00 K jcn_only_AD Grip71 chr2L + chr2L_18709128_18709186 chr2L_18709139_18709186 chr2L_18709187_18709481;chr2L_18708849_18709127 8.25 15.38 0.00 6.67 4.55 9.09 NA 2.56 15.00 NA 13.04 1.85 NA NA 13.04 8.33 NA 13.64 12.12 4.00 12.00 NA 4.00 NA NA 9.52 6.90 NA NA NA 28.00 NA 4.76 14.63 NA NA 21.21 4.00 0.00 6.82 NA 6.25 17.24 NA 25.00 NA 9.09 NA 8.16 NA 6.06 4.55 NA NA 4.17 NA NA 13.64 K jcn_only_AD RpL36A,I_chr2L_8042126_8042468,snoRNA:Psi28S-2648 chr2L - chr2L_8042126_8042468 chr2L_8042126_8042439 chr2L_8042026_8042125;chr2L_8042469_8042568 99.99 100.00 100.00 99.99 100.00 99.97 99.98 99.99 99.98 100.00 99.99 100.00 99.97 100.00 99.98 99.98 100.00 99.99 99.99 99.98 99.99 99.97 100.00 99.98 100.00 100.00 99.98 100.00 99.99 99.99 100.00 99.98 99.99 99.99 99.99 99.95 99.96 100.00 99.99 99.99 99.97 99.97 99.97 99.98 99.97 99.98 100.00 100.00 99.98 100.00 99.97 100.00 99.97 100.00 99.98 99.99 99.99 99.99 K jcn_only_AA Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046129;chr3L_16045251_16046108;chr3L_16045251_16045854;chr3L_16045251_16046111 chr3L_16045251_16046104 chr3L_16045216_16045250;chr3L_16046130_16046204 62.83 63.41 68.75 68.57 60.71 78.18 60.27 66.67 64.36 67.57 57.50 71.13 55.38 66.15 64.56 59.14 53.23 56.67 67.50 60.94 59.62 59.09 60.76 55.10 52.17 74.63 64.18 47.62 65.52 65.12 61.90 71.79 62.24 69.17 68.75 49.06 60.00 70.00 52.27 63.81 64.29 68.14 61.54 67.27 63.64 59.32 61.29 68.85 57.01 61.90 58.62 50.00 69.23 NA 57.69 72.73 57.14 70.71 K jcn_only_AA ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13413919_13414338;chr2R_13413823_13414338 chr2R_13413922_13414338 chr2R_13414339_13414406;chr2R_13412209_13413822 80.56 80.37 82.58 81.82 79.38 78.63 78.91 81.25 77.73 93.18 75.00 83.06 74.49 81.11 82.40 78.23 77.06 85.44 79.09 83.86 78.64 81.60 84.48 84.40 82.76 80.56 80.72 80.56 83.33 80.42 80.00 79.78 80.48 83.76 86.23 80.14 83.52 76.74 83.68 79.70 75.00 85.04 84.76 77.44 77.78 78.79 83.52 87.27 82.42 77.53 85.45 80.52 75.53 89.02 78.10 80.26 88.75 83.19 K alternative_acceptor CG9104,CG9099 chrX - chrX_16777969_16778096 chrX_16778035_16778096 chrX_16778097_16778358;chrX_16777528_16777968 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 98.39 100.00 95.65 98.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.68 96.77 100.00 97.22 100.00 100.00 96.97 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 91.18 97.92 97.44 97.92 97.96 96.67 100.00 100.00 100.00 97.14 95.24 100.00 100.00 98.00 100.00 100.00 96.15 96.00 96.77 97.44 100.00 100.00 100.00 K intron_retention msk,I_chr3L_8109906_8110404 chr3L + chr3L_8109630_8110404 chr3L_8109629_8109630;chr3L_8110404_8110405 chr3L_8109278_8109629;chr3L_8110405_8110504 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.28 0.00 0.00 0.79 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG10188 chr2L - chr2L_19508266_19508325;chr2L_19508266_19508351 chr2L_19508266_19508416 chr2L_19507490_19508265;chr2L_19508417_19508726 0.00 NA NA NA NA NA NA 0.00 3.57 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 0.00 15.00 NA NA NA NA NA 0.00 NA NA NA NA 0.00 0.00 NA NA NA NA 5.00 NA 0.00 NA NA NA NA NA 0.00 7.69 NA 3.85 NA NA NA NA NA NA NA K intron_retention CG3164,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_123630_123693 chr2L_123629_123630;chr2L_123693_123694 chr2L_123325_123629;chr2L_123694_123794 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 1.06 0.00 0.00 0.00 0.00 2.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG4699 chr3R + chr3R_11619752_11620550;chr3R_11619772_11620550;chr3R_11619570_11620550;chr3R_11619676_11620550 chr3R_11619776_11620550 chr3R_11620551_11621301;chr3R_11619539_11619569 26.10 42.42 19.61 13.43 37.93 19.51 31.25 10.77 29.82 56.52 26.92 14.67 15.38 30.00 19.15 7.35 26.67 15.00 19.57 23.68 36.00 25.53 25.30 27.45 32.35 10.00 34.38 25.00 20.83 28.12 6.52 NA 45.95 22.22 17.02 18.52 32.50 27.03 32.26 35.48 30.00 22.54 15.22 29.63 37.04 43.18 7.69 33.33 19.10 50.00 25.00 20.51 34.29 62.07 22.92 29.03 48.00 23.81 K alternative_acceptor Ptp99A,I_chr3R_25302126_25302175 chr3R + chr3R_25309466_25310173 chr3R_25309466_25309678 chr3R_25309191_25309465;chr3R_25310174_25310193 100.00 100.00 97.44 100.00 100.00 96.77 100.00 93.44 100.00 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.70 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.28 99.02 98.48 100.00 97.96 100.00 100.00 98.59 97.27 98.18 98.67 100.00 100.00 100.00 100.00 100.00 100.00 98.70 100.00 98.33 100.00 100.00 97.44 100.00 97.50 96.83 100.00 K alternative_donor POSH,RI_chr2R_13458667_13458738,Rab4,I_chr2R_13461027_13461136 chr2R + chr2R_13458667_13458738 chr2R_13458672_13458738 chr2R_13458739_13458838;chr2R_13458567_13458666 88.89 77.78 77.78 94.12 87.50 NA 96.00 94.12 82.61 81.82 83.33 93.75 NA NA 87.50 90.91 NA 91.67 83.33 95.00 90.00 96.00 86.36 90.00 81.25 90.91 82.61 100.00 92.86 75.00 90.00 NA 90.00 87.50 90.00 92.86 93.75 92.31 75.00 91.30 100.00 90.91 NA 78.26 80.00 72.73 87.50 88.89 77.78 87.88 88.89 86.67 77.78 83.33 100.00 90.00 81.82 90.00 K intron_retention mu2,I_chr3L_1945382_1945647 chr3L - chr3L_1945574_1945647 chr3L_1945573_1945574;chr3L_1945647_1945648 chr3L_1945437_1945573;chr3L_1945648_1945655 25.00 NA NA 30.77 NA NA NA 23.08 27.78 NA NA NA NA NA 36.36 20.00 NA NA NA 23.81 NA NA 25.00 55.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA 25.00 NA NA NA NA NA 25.00 NA NA NA K cassette CG5288 chr3L - chr3L_8978332_8978518 chr3L_8978332_8978383;chr3L_8978409_8978518 chr3L_8978384_8978408 chr3L_8978153_8978331;chr3L_8978519_8978733 63.07 58.33 75.00 75.00 NA 35.71 66.67 68.75 65.22 NA NA 66.67 69.23 70.00 50.00 47.06 55.56 NA 50.00 58.62 63.64 NA 61.11 46.15 61.11 80.00 52.38 27.27 NA 50.00 75.00 NA NA 68.75 75.00 68.75 NA 66.67 61.54 52.63 66.67 77.78 58.33 76.92 NA 66.67 66.67 NA 62.50 33.33 62.50 87.50 NA 58.33 56.25 90.91 45.45 NA K jcn_only_AA CG7332,I_chrX_18779996_18780073,RI_chrX_18780777_18780878 chrX + chrX_18780777_18780878 chrX_18780777_18780868 chrX_18780677_18780776;chrX_18780879_18780879 97.53 100.00 95.74 100.00 94.59 97.22 100.00 98.65 98.63 NA 96.77 100.00 95.83 97.30 96.49 97.30 96.97 97.14 100.00 97.53 96.30 94.29 98.28 100.00 95.83 100.00 95.56 NA 91.89 100.00 97.22 100.00 100.00 100.00 94.74 96.67 96.23 97.06 98.08 98.39 95.65 98.67 100.00 100.00 100.00 94.74 96.55 100.00 98.18 96.97 97.67 100.00 97.14 96.30 100.00 97.83 91.89 100.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2389073;chrX_2389272_2389644;chrX_2389762_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2395659 chrX_2389074_2389271;chrX_2389645_2389761;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664 chrX_2387149_2387248;chrX_2395660_2395759 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K jcn_only_AA CG14785,CG14786,ns3 chrX - chrX_1349727_1349782 chrX_1349729_1349782 chrX_1349783_1349982;chrX_1349248_1349726 95.45 NA NA NA NA NA NA NA NA NA NA 95.45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA eIF-4a,I_chr2L_5985221_5985289 chr2L + chr2L_5985221_5985338;chr2L_5985221_5985342 chr2L_5985221_5985289 chr2L_5985121_5985220;chr2L_5985343_5985389 0.11 0.04 0.04 0.22 0.07 0.00 0.14 0.11 0.20 0.13 0.12 0.13 0.07 0.16 0.10 0.22 0.16 0.11 0.10 0.11 0.08 0.16 0.15 0.04 0.22 0.22 0.25 0.11 0.00 0.10 0.00 0.00 0.36 0.10 0.07 0.12 0.25 0.05 0.15 0.08 0.28 0.16 0.17 0.05 0.34 0.03 0.11 0.05 0.11 0.12 0.17 0.20 0.22 0.08 0.14 0.14 0.05 0.10 K alternative_donor CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20827154_20827496 chr2L_20827158_20827496 chr2L_20827497_20827676;chr2L_20827119_20827153 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.46 99.68 100.00 100.00 100.00 100.00 100.00 99.35 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.03 100.00 100.00 100.00 99.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.47 99.66 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_acceptor CG31710 chr2L - chr2L_9703179_9703267 chr2L_9703182_9703267 chr2L_9703268_9703605;chr2L_9702964_9703178 6.67 NA 0.00 24.14 NA NA 9.52 22.22 0.00 NA NA 0.00 NA 14.29 6.67 6.67 6.67 NA 0.00 10.81 NA NA 30.77 0.00 NA NA NA NA NA NA NA NA 0.00 9.09 NA NA NA NA NA 15.38 NA 4.35 NA NA 0.00 0.00 0.00 0.00 24.14 5.26 NA NA 0.00 NA 23.53 0.00 30.77 18.52 K intron_retention TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748984_19750012 chr2R_19748983_19748984;chr2R_19750012_19750013 chr2R_19748884_19748983;chr2R_19750013_19750013 86.67 86.36 82.61 83.72 90.00 83.33 91.67 80.00 91.14 NA 90.48 82.35 86.67 86.96 73.33 88.89 86.21 95.83 85.71 88.14 82.76 85.71 88.00 94.44 90.48 84.38 81.82 91.67 88.89 93.75 53.33 86.67 86.67 86.79 90.48 90.48 66.67 85.71 86.21 84.00 90.91 84.62 85.00 93.75 69.23 84.21 72.22 92.31 90.00 83.33 87.50 84.62 81.82 100.00 88.57 94.74 92.31 77.27 K cassette CG12129,RI_chr2R_5921057_5921261 chr2R + chr2R_5921057_5921261 chr2R_5921057_5921108;chr2R_5921209_5921261 chr2R_5921109_5921208 chr2R_5920957_5921056;chr2R_5921262_5921361 96.55 100.00 95.65 93.75 100.00 100.00 100.00 94.23 98.15 100.00 94.12 100.00 95.24 100.00 100.00 97.67 94.74 95.00 96.55 97.50 100.00 100.00 96.55 88.00 100.00 95.45 100.00 100.00 100.00 94.44 80.65 100.00 96.88 100.00 100.00 100.00 95.00 95.00 88.46 97.73 95.65 97.62 95.24 96.15 95.24 95.12 100.00 92.68 98.00 95.65 96.55 100.00 91.67 94.44 100.00 96.43 92.86 94.12 K alternative_donor CG31673,RI_chr2L_20830210_20830280 chr2L + chr2L_20830074_20830280 chr2L_20830210_20830280 chr2L_20830281_20830380;chr2L_20829608_20830073 0.82 1.26 0.69 1.28 0.85 1.02 1.10 1.97 0.64 1.37 0.00 0.52 0.00 0.91 0.62 0.62 0.78 0.98 1.64 0.85 1.79 1.27 0.00 1.02 0.00 0.82 0.00 0.79 1.16 0.00 2.42 0.00 0.88 2.25 1.03 0.99 0.57 0.66 0.60 1.04 0.00 0.74 1.04 0.00 0.00 0.58 0.79 0.00 1.28 1.03 0.54 1.40 0.78 1.52 0.60 0.56 1.38 1.23 K intron_retention drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9385039_9385117 chr2R_9385038_9385039;chr2R_9385117_9385118 chr2R_9384873_9385038;chr2R_9385118_9385237 0.00 2.60 0.00 3.85 0.00 2.53 0.00 2.10 1.79 0.00 0.00 1.43 0.00 0.00 0.00 3.45 0.00 0.00 0.00 2.34 0.00 0.00 0.83 0.00 3.39 0.00 3.45 1.35 0.00 0.00 0.00 4.65 0.00 0.00 1.54 0.00 1.19 0.00 1.09 0.00 4.44 0.00 0.00 0.00 2.70 3.66 2.47 0.00 0.00 1.69 2.02 0.00 0.00 3.64 0.00 1.41 0.00 0.00 K intron_retention simj,I_chr3L_10680263_10680313 chr3L + chr3L_10658471_10678109 chr3L_10658470_10658471;chr3L_10678109_10678110 chr3L_10658150_10658470;chr3L_10678110_10678994 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 3.77 0.00 0.00 0.00 1.72 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG10671,Gen chr3L - chr3L_5138899_5138972 chr3L_5138898_5138899;chr3L_5138972_5138973 chr3L_5138295_5138898;chr3L_5138973_5139125 2.70 0.00 1.82 6.56 0.00 8.70 3.28 3.85 3.28 0.00 0.00 4.65 0.00 7.32 5.26 1.79 0.00 0.00 5.26 2.44 0.00 0.00 4.17 2.94 0.00 4.17 7.41 0.00 2.90 0.00 4.62 3.33 0.00 6.67 0.00 6.25 0.00 0.00 0.00 3.16 0.00 3.80 0.00 4.44 0.00 2.90 6.25 5.31 0.00 5.26 0.00 0.00 0.00 10.53 2.00 8.70 2.70 3.81 K intron_retention crl chrX + chrX_16488221_16488303 chrX_16488220_16488221;chrX_16488303_16488304 chrX_16488139_16488220;chrX_16488304_16488563 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 K jcn_only_AA Aats-leu chr3L + chr3L_4826043_4826101 chr3L_4826043_4826094 chr3L_4825871_4826042;chr3L_4826102_4827886 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 NA NA 95.12 100.00 100.00 NA NA NA 100.00 96.88 NA 96.15 NA NA NA 100.00 100.00 NA 96.15 NA 96.43 NA NA NA NA NA 95.83 100.00 K alternative_acceptor CG8043,CG11755 chr3R + chr3R_4502770_4502817;chr3R_4502770_4502843;chr3R_4502770_4502810 chr3R_4502770_4502834 chr3R_4502645_4502769;chr3R_4502844_4503955 90.00 NA 90.00 84.62 NA 100.00 85.71 90.91 83.33 NA NA 87.50 NA 77.78 100.00 100.00 NA 90.00 87.50 86.67 71.43 100.00 80.00 100.00 77.78 88.89 90.00 42.86 NA NA 92.86 100.00 NA 90.00 NA 80.00 85.71 100.00 100.00 91.67 NA 100.00 NA 88.89 NA 100.00 100.00 NA 82.35 NA 81.82 NA NA 88.89 100.00 100.00 100.00 100.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814174;chr2R_2814327_2814894;chr2R_2815657_2816013;chr2R_2816342_2816577;chr2R_2816779_2817459;chr2R_2817604_2817753 chr2R_2814175_2814326;chr2R_2814895_2815656;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817460_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 50.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention REI_chr3L_1545423_1545473,I_chr3L_1545606_1545652,CG12099,CG7879 chr3L - chr3L_1556218_1556271 chr3L_1556217_1556218;chr3L_1556271_1556272 chr3L_1556063_1556217;chr3L_1556272_1557714 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 3.12 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.97 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 K jcn_only_AD lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22817658_22817713;chr2L_22817653_22817713 chr2L_22817556_22817713 chr2L_22817714_22817839;chr2L_22817553_22817555 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 1.85 NA 1.08 0.00 0.00 NA 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.63 K intron_retention Doa,I_chr3R_24715823_24718923,I_chr3R_24747391_24747896 chr3R + chr3R_24746992_24747080 chr3R_24746991_24746992;chr3R_24747080_24747081 chr3R_24746878_24746991;chr3R_24747081_24747146 5.14 6.00 4.26 4.96 4.92 5.22 6.72 4.72 5.35 5.05 8.91 6.50 4.21 6.52 5.49 5.00 7.50 3.11 6.25 3.27 5.65 7.87 4.96 5.10 6.38 4.11 7.54 8.86 8.57 4.41 4.71 5.62 6.84 4.90 3.42 5.80 5.15 4.35 4.59 5.02 5.06 5.78 7.84 5.10 5.22 5.06 5.14 6.38 5.59 6.21 4.49 3.05 4.81 3.82 5.43 5.00 5.71 4.24 N cassette IP3K2,I_chrX_13216481_13219804 chrX + chrX_13213081_13221380 chrX_13213081_13219804;chrX_13220889_13221380 chrX_13219805_13220888 chrX_13212448_13213080;chrX_13221381_13221630 58.00 54.79 55.17 53.85 58.00 57.38 80.85 47.30 63.87 64.71 47.73 52.43 48.15 53.70 53.85 54.39 53.33 60.32 54.10 63.03 56.41 40.00 54.37 52.29 62.12 72.88 64.13 76.27 61.54 62.24 65.31 73.08 72.26 63.29 64.86 77.78 55.20 58.44 56.10 64.15 72.29 56.91 58.82 53.75 73.26 65.62 51.76 72.07 60.00 48.31 46.53 48.28 55.38 47.14 58.33 59.21 50.47 69.07 K jcn_only_AA CG4616 chr2R + chr2R_9094497_9094571 chr2R_9094497_9094566 chr2R_9094354_9094496;chr2R_9094572_9094854 95.65 NA NA 92.00 NA NA NA 95.65 100.00 NA NA 95.83 NA NA 91.30 96.15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 88.46 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 87.50 K intron_retention None chrU + chrU_1179335_1184082 chrU_1179334_1179335;chrU_1184082_1184083 84.21 79.17 86.36 80.00 76.92 93.75 90.91 78.33 82.46 91.67 84.21 89.36 86.67 77.27 83.33 90.00 89.47 80.00 83.87 86.96 94.12 78.95 72.73 84.00 94.12 92.86 96.15 83.33 94.12 95.00 58.06 95.45 100.00 89.80 92.86 93.33 66.67 91.67 78.95 86.67 82.14 86.27 83.33 94.74 69.57 86.11 76.92 83.33 91.30 75.86 83.87 85.71 80.00 88.24 81.82 74.07 61.36 83.33 K alternative_acceptor CG3635 chr2L + chr2L_22183467_22183607;chr2L_22183467_22183527 chr2L_22183467_22183599 chr2L_22183394_22183466;chr2L_22183608_22183915 8.14 8.40 10.48 8.82 16.00 10.34 8.24 9.26 9.66 5.33 9.78 11.07 7.69 7.69 7.63 6.30 11.58 12.87 5.50 9.13 8.25 9.82 8.50 5.00 5.75 7.79 8.98 8.14 14.29 6.45 6.88 4.68 6.52 10.90 7.48 3.41 12.40 8.87 6.92 6.64 5.97 11.30 4.29 9.39 6.63 6.44 7.89 3.49 6.31 8.70 6.96 5.33 10.69 6.19 8.55 12.14 10.64 4.60 K jcn_only_AD CG11722,RI_chr3R_5873666_5874292 chr3R - chr3R_5870477_5870538 chr3R_5870477_5870534 chr3R_5870318_5870476;chr3R_5870539_5870781 96.15 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 95.45 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.15 NA NA NA NA NA NA NA NA 95.24 K intron_retention regucalcin,I_chrX_11910759_11910811 chrX + chrX_11909600_11910035 chrX_11909599_11909600;chrX_11910035_11910036 chrX_11909538_11909599;chrX_11910036_11910754 0.00 0.00 0.76 2.36 0.00 0.00 0.79 0.52 0.00 0.00 0.00 0.47 0.00 1.85 1.07 0.71 1.94 0.00 0.00 1.72 0.00 0.87 2.22 0.00 2.99 0.00 4.00 1.96 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 2.15 0.00 0.69 2.04 0.00 1.10 1.92 1.49 0.00 0.00 1.98 0.00 1.38 0.00 2.67 0.00 0.00 3.28 0.00 0.00 0.00 0.00 N alternative_acceptor l(1)G0196,I_chrX_21890195_21895316,I_chrX_21900456_21904601 chrX + chrX_21897231_21897326 chrX_21897231_21897314 chrX_21897164_21897230;chrX_21897327_21897813 29.41 NA NA NA NA NA 17.65 NA NA NA NA NA 29.41 NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG6724 chr2L - chr2L_10768891_10768947 chr2L_10768890_10768891;chr2L_10768947_10768948 chr2L_10768644_10768890;chr2L_10768948_10769614 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042888_5042960;chr2L_5042891_5042960 chr2L_5042885_5042960 chr2L_5042961_5043016;chr2L_5042835_5042884 4.17 11.11 8.00 0.00 7.14 5.26 4.55 13.51 3.77 4.76 0.00 2.22 7.69 4.17 4.00 2.27 6.67 5.26 3.45 1.69 6.25 3.57 0.00 3.23 4.00 0.00 11.54 8.00 12.12 3.45 6.67 0.00 2.94 0.00 3.85 4.17 0.00 5.26 3.33 5.08 5.26 2.44 0.00 5.26 5.71 2.04 3.70 3.64 6.12 0.00 7.32 10.53 6.67 4.76 4.17 13.79 0.00 1.82 K intron_retention CG5646,I_chr3R_23386287_23386484,snmRNA:157 chr3R - chr3R_23386598_23386896 chr3R_23386597_23386598;chr3R_23386896_23386897 chr3R_23386485_23386597;chr3R_23386897_23387011 31.82 NA 36.36 43.75 NA NA 30.77 40.00 58.33 NA NA 26.92 NA NA NA 50.00 NA NA NA 30.00 NA 25.00 37.21 27.27 19.05 NA 33.33 26.47 34.29 26.09 40.00 36.36 33.33 33.33 20.69 18.92 52.00 NA 23.33 31.82 21.88 30.00 NA 33.33 22.58 24.39 23.08 25.00 40.00 30.43 30.00 46.15 66.67 18.52 NA 88.89 66.67 57.89 K cassette CG10948,I_chr3L_12840257_12841136 chr3L - chr3L_12838954_12841469 chr3L_12838954_12840149;chr3L_12840257_12841469 chr3L_12840150_12840256 chr3L_12838834_12838953;chr3L_12841470_12842195 20.00 40.00 21.43 13.33 40.00 20.00 16.67 23.33 31.71 NA 25.00 28.21 12.50 31.58 40.00 25.93 26.67 30.00 17.65 29.41 20.00 35.29 25.00 18.52 20.00 20.00 22.22 17.65 35.29 14.29 8.82 23.53 16.13 26.92 15.79 9.52 20.00 14.29 14.71 14.29 12.50 28.12 16.67 30.43 20.00 18.18 16.67 16.67 26.92 23.81 30.77 30.77 20.00 26.32 17.39 23.08 10.34 13.16 K intron_retention CG8979 chr2R - chr2R_7855285_7855341 chr2R_7855284_7855285;chr2R_7855341_7855342 chr2R_7854841_7855284;chr2R_7855342_7855736 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.35 0.00 0.00 0.00 0.00 1.71 1.23 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.39 0.00 0.00 0.00 0.46 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG40263,F_chr2RHet_1265687_1293040,F_chr2RHet_1298459_1298703,F_chr2RHet_1298459_1311408,F_chr2RHet_1298885_1299622,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1265687_1292103 chr2RHet_1265686_1265687;chr2RHet_1292103_1292104 chr2RHet_1265587_1265686;chr2RHet_1292104_1292186 0.00 0.00 0.00 NA NA 0.00 5.26 4.35 4.55 NA NA 0.00 0.00 0.00 0.00 2.38 0.00 NA 0.00 3.12 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 5.41 0.00 NA 0.00 0.00 0.00 0.00 NA K mutually_exclusive Tm1,I_chr3R_11125070_11126469,I_chr3R_11126545_11128874,I_chr3R_11128245_11128874 chr3R + chr3R_11126545_11127345,chr3R_11127409_11128874 chr3R_11126545_11126732,chr3R_11126796_11128874 chr3R_11127346_11127408 chr3R_11126733_11126795 chr3R_11126470_11126544;chr3R_11128875_11128944 1.15 2.25 0.91 2.29 0.00 0.93 3.39 1.50 1.49 5.66 0.00 1.19 0.00 0.99 1.71 1.15 0.00 2.06 0.00 0.84 1.25 1.06 0.74 0.88 3.28 3.67 2.17 4.17 4.41 0.00 1.77 3.12 1.59 1.14 0.00 2.78 1.08 2.27 2.35 0.99 0.93 1.61 1.22 0.00 4.88 0.90 2.00 1.10 1.08 1.03 0.83 1.32 1.56 1.39 0.72 1.11 1.12 0.94 K alternative_acceptor CG7369 chr3L + chr3L_22735652_22738488 chr3L_22735652_22738485 chr3L_22734812_22735651;chr3L_22738489_22739986 71.43 NA NA NA NA NA NA NA 81.82 NA NA NA NA NA NA NA NA NA NA 60.00 NA NA 80.00 NA NA NA NA NA NA NA NA NA NA 69.23 NA NA 71.43 NA NA 50.00 NA 55.56 NA NA NA NA NA NA 85.71 NA 80.00 NA NA NA NA NA NA NA N alternative_donor Bruce chr3R - chr3R_6141764_6141972 chr3R_6141764_6141923 chr3R_6141518_6141763;chr3R_6141973_6143270 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 82.05 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG1646,I_chr3R_24640561_24640869,I_chr3R_24641816_24641874 chr3R + chr3R_24641449_24641874 chr3R_24641448_24641449;chr3R_24641874_24641875 chr3R_24641204_24641448;chr3R_24641875_24641974 100.00 98.04 98.39 100.00 100.00 100.00 98.33 98.96 99.17 100.00 100.00 99.15 97.37 100.00 100.00 100.00 97.62 100.00 100.00 99.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.00 98.61 100.00 100.00 99.39 100.00 100.00 100.00 100.00 98.28 100.00 98.21 100.00 99.29 100.00 100.00 98.57 100.00 100.00 99.21 99.21 100.00 98.68 100.00 98.00 100.00 100.00 98.28 100.00 99.34 K intron_retention CG13377 chrX - chrX_152862_152925 chrX_152861_152862;chrX_152925_152926 chrX_152624_152861;chrX_152926_153635 6.67 NA NA 16.00 NA NA NA 6.67 0.00 NA NA NA NA NA NA 45.45 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RhoGEF3,I_chr3L_298140_298220 chr3L + chr3L_301682_301757 chr3L_301681_301682;chr3L_301757_301758 chr3L_301163_301681;chr3L_301758_302301 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 2.08 0.00 1.48 0.00 0.00 1.71 0.00 0.00 0.00 3.28 2.78 0.00 0.00 1.92 0.00 3.70 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 K intron_retention Hel89B chr3R + chr3R_11808543_11808603 chr3R_11808542_11808543;chr3R_11808603_11808604 chr3R_11808302_11808542;chr3R_11808604_11809178 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor eIF-1A chr3R + chr3R_14100479_14100547;chr3R_14100479_14100588 chr3R_14100479_14100566 chr3R_14100417_14100478;chr3R_14100589_14100702 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.42 0.00 0.00 0.74 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.49 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.55 0.33 0.44 0.28 0.00 0.27 1.01 K intron_retention CG3632,RI_chrX_16195880_16196242 chrX + chrX_16194191_16194258 chrX_16194190_16194191;chrX_16194258_16194259 chrX_16194064_16194190;chrX_16194259_16194364 0.00 0.00 0.00 0.00 0.00 0.00 3.57 2.63 0.00 NA 0.00 5.26 0.00 0.00 2.94 1.85 0.00 0.00 0.00 3.77 0.00 0.00 4.17 NA NA 0.00 6.90 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 NA 3.23 0.00 0.00 0.00 0.00 9.09 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K alternative_acceptor plx,noncoding_14842 chr3R + chr3R_1511993_1512866;chr3R_1511993_1512878 chr3R_1511993_1512762 chr3R_1511864_1511992;chr3R_1512879_1513091 83.33 80.00 81.82 86.67 83.33 NA 85.71 83.33 88.89 NA 57.14 90.00 85.71 88.89 84.62 81.25 71.43 71.43 83.33 77.78 83.33 NA 87.50 75.00 NA 90.00 75.00 NA 75.00 71.43 90.91 NA 80.00 83.33 75.00 80.00 83.33 85.71 83.33 90.91 NA 92.86 91.67 83.33 NA 83.33 NA 90.91 80.95 75.00 80.00 87.50 NA NA 75.00 NA NA 100.00 K alternative_acceptor I_chr3L_18664773_18665233,GNBP2,I_chr3L_18667579_18667644 chr3L - chr3L_18667579_18667644 chr3L_18667583_18667644 chr3L_18667645_18667712;chr3L_18667514_18667578 96.77 95.74 95.45 96.55 100.00 97.50 98.08 98.36 98.59 83.33 100.00 98.78 100.00 96.15 100.00 95.00 96.00 96.43 97.30 100.00 100.00 95.45 94.92 98.15 97.22 96.15 98.46 100.00 96.67 96.77 85.71 96.43 96.97 97.92 92.31 96.77 96.77 91.67 98.67 91.03 88.24 97.18 96.00 97.87 100.00 97.83 93.48 92.11 98.46 100.00 93.75 96.15 100.00 96.97 94.44 100.00 96.15 96.67 K intron_retention CG32809,I_chrX_1576304_1577129,I_chrX_1576463_1577129,I_chrX_1576815_1577129,I_chrX_1577031_1577129,CEI_chrX_1579569_1579679,RI_chrX_1585391_1586471,I_chrX_1589508_1589564 chrX - chrX_1576815_1576895 chrX_1576814_1576815;chrX_1576895_1576896 chrX_1576803_1576814;chrX_1576896_1576915 0.00 NA NA NA NA NA 0.00 19.05 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 3.70 NA 13.33 NA NA NA 6.67 NA NA NA K alternative_acceptor RpL15 chr3LHet + chr3LHet_2397820_2398143;chr3LHet_2397820_2398127 chr3LHet_2397820_2398049 chr3LHet_2397802_2397819;chr3LHet_2398144_2398454 19.01 19.55 9.20 17.66 19.56 13.91 30.95 12.19 23.09 36.97 17.48 23.56 23.60 25.38 9.56 31.12 14.40 10.38 11.53 11.37 19.40 25.05 29.41 31.74 32.46 12.43 29.14 15.44 17.75 19.01 28.71 12.10 19.01 12.05 21.43 19.27 35.55 34.78 34.34 7.41 16.13 13.19 13.95 7.86 10.41 13.69 34.93 11.72 13.87 38.00 26.47 33.99 3.40 27.50 8.95 31.28 32.04 7.13 N alternative_donor Lag1,RI_chrX_6153758_6153930,I_chrX_6153758_6155077,RI_chrX_6153758_6161036,I_chrX_6160907_6161036 chrX - chrX_6153758_6155077;chrX_6153758_6154631;chrX_6153758_6153930;chrX_6153758_6161036;chrX_6153758_6154358;chrX_6153758_6160439 chrX_6153758_6154193 chrX_6153658_6153757;chrX_6161037_6161136 2.91 0.82 3.75 3.19 0.56 3.65 3.64 1.63 2.44 7.69 2.91 3.76 0.46 0.48 5.06 1.67 0.51 4.57 0.42 2.67 6.85 6.64 3.50 3.81 1.04 0.52 2.21 6.44 8.56 2.99 1.84 1.05 6.03 1.86 0.47 4.61 6.49 0.88 6.52 2.22 0.43 3.56 0.51 0.39 8.82 5.08 0.41 0.31 2.09 7.98 4.15 4.71 3.57 6.74 2.40 0.96 8.52 0.92 K intron_retention MB8.chr3R.pasa.66,Alh,I_chr3R_2924206_2924272,I_chr3R_2927820_2933442,RI_chr3R_2946518_2946663 chr3R - chr3R_2924206_2924276 chr3R_2924205_2924206;chr3R_2924276_2924277 chr3R_2924106_2924205;chr3R_2924277_2924372 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 7.69 NA NA 0.00 NA NA 6.25 NA NA 0.00 NA 4.55 NA 8.33 0.00 5.26 NA NA 4.35 23.53 NA NA NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 2.94 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG6043,I_chr2L_13267973_13268086 chr2L + chr2L_13271628_13272233 chr2L_13271973_13272233 chr2L_13272234_13272242;chr2L_13271624_13271627 65.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 55.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor sd,noncoding_23930,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15706472_15707633;chrX_15706564_15707633 chrX_15706568_15707633 chrX_15707634_15707635;chrX_15706468_15706471 20.00 NA 0.00 33.33 25.00 20.00 16.67 28.57 26.92 18.18 14.29 17.39 NA 12.50 40.00 13.33 28.57 60.00 25.00 16.67 16.67 30.77 14.29 21.43 33.33 42.86 15.38 10.53 31.58 31.82 22.22 7.69 8.70 22.22 8.33 37.50 22.22 28.57 21.43 33.33 10.00 18.75 0.00 11.11 22.22 9.09 14.29 41.94 20.00 NA 27.27 14.29 0.00 NA 18.18 28.57 NA 17.65 K jcn_only_AD CG8184,I_chrX_15620707_15620769 chrX + chrX_15617113_15617265;chrX_15617158_15617265 chrX_15617191_15617265 chrX_15617266_15618411;chrX_15615597_15617112 13.75 26.09 4.76 NA 13.04 17.24 5.00 14.29 14.04 10.42 NA 8.70 NA 10.71 15.15 25.00 NA 19.05 17.39 11.84 11.54 14.89 13.46 12.12 NA NA 17.95 14.63 13.21 10.20 19.05 NA 9.17 21.57 17.50 NA 19.12 31.03 17.39 9.91 NA 13.11 10.00 7.69 10.64 7.89 20.00 12.38 7.50 NA 17.95 8.00 16.13 NA 19.23 NA NA 20.00 K intron_retention CG16718,RI_chr3R_15464150_15464400,EI_chr3R_15465136_15466705 chr3R - chr3R_15461705_15461761 chr3R_15461704_15461705;chr3R_15461761_15461762 chr3R_15461599_15461704;chr3R_15461762_15461937 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.06 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention AP-50,CG7054 chr3R + chr3R_18289848_18289896 chr3R_18289847_18289848;chr3R_18289896_18289897 chr3R_18289065_18289847;chr3R_18289897_18290254 100.00 100.00 98.73 100.00 100.00 98.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 99.02 100.00 98.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.65 100.00 100.00 100.00 98.77 98.98 100.00 100.00 98.73 100.00 98.48 100.00 100.00 100.00 100.00 98.55 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention I_chrX_5794457_5796722,Act5C,I_chrX_5796187_5796722,I_chrX_5796328_5796722,I_chrX_5796578_5796722 chrX + chrX_5796130_5796722 chrX_5796129_5796130;chrX_5796722_5796723 chrX_5796087_5796129;chrX_5796723_5796822 1.55 2.17 1.91 3.27 3.80 3.01 2.35 1.48 2.60 0.00 1.95 2.02 2.38 4.26 2.03 2.46 2.47 1.55 2.69 1.29 2.09 0.66 0.76 0.77 0.83 0.99 1.23 3.93 0.95 1.13 2.48 0.00 0.00 3.04 1.71 0.22 1.04 0.92 0.51 0.25 1.35 2.37 1.89 0.00 0.00 1.60 1.58 0.00 2.51 1.10 0.88 1.49 1.59 0.62 2.42 1.27 1.40 1.64 K jcn_only_AA mop chr3L - chr3L_14763292_14763354 chr3L_14763300_14763354 chr3L_14763355_14763536;chr3L_14763112_14763291 100.00 100.00 98.28 99.21 100.00 100.00 99.09 98.26 100.00 100.00 100.00 100.00 100.00 96.72 100.00 98.92 100.00 98.59 100.00 99.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.00 98.99 98.78 100.00 99.13 98.68 100.00 99.11 100.00 98.61 100.00 100.00 98.68 100.00 100.00 98.15 99.25 100.00 100.00 100.00 98.15 100.00 100.00 100.00 98.11 98.65 K alternative_donor mael chr3L + chr3L_22717513_22717583;chr3L_22717525_22717583 chr3L_22717501_22717583 chr3L_22717584_22717785;chr3L_22717334_22717500 0.00 0.00 0.00 0.00 0.00 0.00 3.12 2.94 0.00 0.00 7.14 0.00 0.00 4.55 3.85 2.94 0.00 0.00 0.00 2.44 8.33 0.00 0.00 0.00 NA 4.76 NA 0.00 6.25 0.00 0.00 4.35 3.57 2.70 0.00 0.00 9.09 0.00 6.67 9.68 4.76 2.78 0.00 NA 6.67 0.00 NA 2.63 4.76 NA 0.00 0.00 0.00 14.29 0.00 5.56 7.69 2.63 K cassette CG1161 chr3R + chr3R_1181851_1182146 chr3R_1181851_1181905;chr3R_1181959_1182146 chr3R_1181906_1181958 chr3R_1181725_1181850;chr3R_1182147_1182246 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 K jcn_only_AD Mpk2,I_chr3R_19977468_19977530,F_chr3R_19985127_19985197 chr3R - chr3R_19977468_19977567 chr3R_19977468_19977530 chr3R_19977368_19977467;chr3R_19977568_19977630 2.27 0.00 NA 2.56 NA NA 9.68 2.04 4.44 NA 0.00 2.63 0.00 NA 3.70 2.08 11.54 0.00 NA 6.56 9.09 5.00 3.45 0.00 NA 0.00 5.26 0.00 20.00 3.85 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 5.77 9.38 4.35 NA 0.00 0.00 5.45 0.00 5.56 8.51 NA 5.13 0.00 0.00 NA 3.12 0.00 3.45 2.27 K jcn_only_AD Df31,RE_chr2L_21628206_21629662,I_chr2L_21628206_21629666,I_chr2L_21628210_21628515,I_chr2L_21628210_21628944,I_chr2L_21628210_21629216,EI_chr2L_21628210_21629715,REI_chr2L_21628210_21629884,I_chr2L_21628224_21629666,I_chr2L_21628734_21629666 chr2L - chr2L_21628210_21629216;chr2L_21628210_21629666;chr2L_21628210_21628515;chr2L_21628210_21629715;chr2L_21628210_21629884 chr2L_21628210_21628944 chr2L_21628124_21628209;chr2L_21629885_21629918 0.00 0.14 0.00 0.00 0.00 0.09 0.06 0.00 0.05 0.00 0.07 0.04 0.00 0.17 0.06 0.00 0.00 0.00 0.13 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.08 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.04 0.00 0.00 0.05 0.00 0.06 0.00 0.03 0.00 0.07 0.00 0.06 0.00 0.25 0.00 0.08 0.04 K jcn_only_AD Lam chr2L + chr2L_5543795_5544037 chr2L_5543799_5544037 chr2L_5544038_5544741;chr2L_5543325_5543794 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.35 0.31 0.26 0.67 0.00 0.00 0.17 0.74 0.00 0.17 0.25 0.00 0.16 0.00 0.28 0.00 0.00 0.00 0.29 0.00 0.35 0.00 0.00 0.46 0.49 0.40 0.53 0.00 0.38 0.52 0.23 K intron_retention CG13004 chrX - chrX_16721639_16721708 chrX_16721638_16721639;chrX_16721708_16721709 chrX_16720972_16721638;chrX_16721709_16722108 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 1.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.31 K jcn_only_AA nimB1 chr2L + chr2L_13964739_13964796 chr2L_13964739_13964793 chr2L_13964670_13964738;chr2L_13964797_13964865 20.17 16.67 17.02 30.77 19.15 7.41 20.00 27.10 18.80 NA 18.92 21.52 30.23 26.83 20.00 19.44 30.77 20.34 15.00 22.99 9.52 NA 33.33 17.39 4.35 21.88 15.62 NA NA 28.00 17.02 24.14 26.47 22.73 NA 23.81 35.71 24.24 14.29 20.00 23.53 19.42 11.63 19.44 13.64 21.88 28.85 25.61 23.16 8.00 15.00 29.03 27.03 32.43 12.96 15.00 23.36 17.14 N alternative_donor cryptocephal,noncoding_4181,I_chr2L_21312209_21314626 chr2L + chr2L_21311018_21311192 chr2L_21311033_21311192 chr2L_21311193_21311214;chr2L_21310948_21311017 53.02 57.14 56.64 56.83 64.91 52.50 50.00 60.32 60.87 56.41 51.96 51.15 52.80 57.80 44.24 64.47 67.86 47.62 53.79 41.33 46.09 55.84 59.43 52.94 51.28 50.59 58.14 64.29 57.14 59.18 52.48 50.54 46.67 53.00 50.00 60.00 62.67 54.76 53.57 52.00 39.13 55.14 64.29 54.21 33.56 51.72 56.67 57.75 49.56 55.24 52.91 52.73 44.33 45.45 53.02 60.00 44.63 43.28 K jcn_only_AA SelR,I_chr3R_6692461_6692530,I_chr3R_6694098_6694160 chr3R - chr3R_6694060_6694160;chr3R_6692717_6694160 chr3R_6692683_6694160 chr3R_6694161_6694260 95.94 100.00 97.14 96.15 94.44 92.31 85.29 96.08 90.59 NA 95.65 96.72 96.30 93.75 94.64 95.45 100.00 83.33 97.14 90.77 96.15 NA 92.50 97.67 NA 97.06 92.68 NA NA 95.45 85.29 NA 85.71 94.44 93.10 100.00 100.00 96.30 100.00 100.00 NA 95.89 92.31 NA 96.15 95.83 95.35 NA 94.59 96.00 96.30 100.00 98.08 97.67 91.67 97.37 96.94 95.24 K alternative_donor Rab30,I_chr2L_7032178_7032236 chr2L - chr2L_7032178_7032244;chr2L_7032178_7032236;chr2L_7032178_7032321 chr2L_7032178_7032310 chr2L_7032078_7032177;chr2L_7032322_7032336 50.00 53.85 55.56 50.00 NA 76.92 47.83 40.91 50.00 40.00 28.57 46.15 30.00 NA 54.55 68.75 66.67 46.15 71.43 56.00 63.64 53.33 52.63 50.00 60.00 36.36 43.75 25.00 41.67 43.75 66.67 50.00 63.16 40.91 NA 46.67 44.44 71.43 41.18 51.72 47.37 50.00 54.55 47.06 50.00 38.46 35.71 54.84 55.56 50.00 50.00 60.00 36.36 41.67 46.67 27.27 NA 54.55 K alternative_donor chrw,RI_chr2R_19408490_19409650,RI_chr2R_19408490_19410750 chr2R - chr2R_19409716_19410750 chr2R_19409716_19409778 chr2R_19409651_19409715;chr2R_19410751_19410850 0.00 0.00 0.00 4.76 0.00 3.45 0.00 2.38 1.69 0.00 NA 2.13 0.00 3.12 0.00 0.00 0.00 2.78 0.00 1.49 3.85 0.00 0.00 2.38 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 2.94 1.75 3.57 2.33 0.00 0.00 0.00 0.00 0.00 0.00 1.82 5.88 2.33 4.17 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG12582 chr3R + chr3R_23594_23980 chr3R_23593_23594;chr3R_23980_23981 chr3R_23459_23593;chr3R_23981_24494 1.69 1.77 1.69 1.57 1.32 0.00 4.67 0.83 1.01 2.08 1.09 0.99 0.94 0.93 0.86 1.18 0.00 0.97 0.00 0.82 1.42 2.21 0.99 1.86 2.98 1.58 2.01 2.34 6.14 2.65 2.75 2.00 2.03 0.58 1.20 1.23 2.87 2.06 1.58 1.93 2.13 1.18 1.18 2.42 2.21 2.29 1.72 1.94 0.74 1.74 1.18 1.91 1.72 2.05 1.13 2.17 1.81 0.61 K intron_retention CG11807 chr2R + chr2R_11091407_11091465 chr2R_11091406_11091407;chr2R_11091465_11091466 chr2R_11090527_11091406;chr2R_11091466_11091680 0.00 0.00 0.00 5.00 0.00 0.00 0.00 2.50 0.00 NA 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 10.81 5.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG13771 chr2L - chr2L_6663068_6663131;chr2L_6663068_6663127 chr2L_6663068_6663123 chr2L_6662854_6663067;chr2L_6663132_6663374 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 6.67 NA NA NA NA NA NA NA NA NA 11.11 K intron_retention Chc,I_chrX_15728946_15729357 chrX - chrX_15727733_15728155 chrX_15727732_15727733;chrX_15728155_15728156 chrX_15727525_15727732;chrX_15728156_15728404 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pi4KIIalpha chr3R - chr3R_1385042_1385100 chr3R_1385041_1385042;chr3R_1385100_1385101 chr3R_1384221_1385041;chr3R_1385101_1385296 0.00 0.00 0.00 0.00 0.00 0.00 2.70 1.47 1.69 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 4.55 0.00 1.79 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 3.03 0.00 0.00 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Chro,I_chr3L_22870968_22871036,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22871119_22871733 chr3L_22871118_22871119;chr3L_22871733_22871734 chr3L_22871037_22871118;chr3L_22871734_22871779 25.00 26.67 25.00 35.48 NA 11.76 30.00 23.08 36.36 NA NA 21.43 17.65 21.05 14.29 21.21 NA NA 27.78 15.15 NA NA 22.22 33.33 NA 18.75 50.00 NA 14.29 30.77 15.38 NA NA 26.09 NA 20.00 46.15 NA NA 35.29 NA 25.00 NA 30.77 NA 19.05 NA 9.68 23.33 25.00 26.92 25.00 NA 30.77 19.05 21.43 NA 30.77 K jcn_only_AA Rbp1-like,R_chrX_13277657_13278332 chrX - chrX_13275077_13278332 chrX_13277657_13278332 chrX_13278333_13278432;chrX_13274199_13275076 24.04 10.34 NA 90.91 NA NA NA NA 53.33 60.87 NA 52.17 NA NA NA NA NA 45.45 NA 24.07 NA 32.14 10.94 0.00 24.00 NA 5.00 14.00 59.02 53.33 NA 21.28 25.21 44.83 11.43 8.96 28.00 7.50 2.08 27.54 12.50 41.18 NA 57.69 13.39 28.33 4.17 30.94 36.17 5.00 18.52 NA 16.67 6.82 NA 2.86 NA 27.40 K intron_retention Top1 chrX + chrX_15214800_15214943 chrX_15214799_15214800;chrX_15214943_15214944 chrX_15214731_15214799;chrX_15214944_15215065 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 100.00 NA NA NA NA NA 92.31 NA NA 100.00 K alternative_donor Nak chr2L - chr2L_18960681_18962884 chr2L_18960681_18962645 chr2L_18960150_18960680;chr2L_18962885_18963115 58.33 50.00 66.67 94.74 42.86 60.00 60.87 77.78 61.54 22.22 83.33 70.83 83.33 58.33 42.11 75.00 75.00 60.00 76.92 52.17 85.71 38.46 42.86 47.37 50.00 58.33 61.11 90.00 83.33 50.00 46.15 NA NA 65.00 66.67 43.75 43.75 38.46 46.67 64.71 57.14 72.73 55.56 50.00 NA 42.86 60.00 NA 56.00 50.00 52.63 90.00 37.50 46.15 72.73 77.78 50.00 NA K intron_retention stck,I_chr3R_4184313_4184380,I_chr3R_4184660_4184730 chr3R + chr3R_4183179_4184192 chr3R_4183178_4183179;chr3R_4184192_4184193 chr3R_4183165_4183178;chr3R_4184193_4184312 33.33 NA NA 20.00 NA NA 41.67 NA 66.67 NA NA 33.33 NA NA NA 63.64 NA NA NA 25.00 NA 16.67 17.65 NA NA 33.33 NA NA 20.00 NA NA NA NA 70.00 NA NA NA NA NA 25.00 NA 54.55 NA NA 23.53 35.71 NA NA 77.78 46.15 33.33 NA NA NA NA NA NA NA K alternative_donor Hairless chr3R + chr3R_16447850_16448305;chr3R_16448221_16448305 chr3R_16447945_16448305 chr3R_16448306_16449020;chr3R_16447843_16447849 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 4.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 5.88 10.00 0.00 0.00 0.00 3.57 0.00 0.00 5.88 0.00 0.00 6.25 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 K cassette CG30115,E_chr2R_14444407_14448590 chr2R - chr2R_14443916_14445307 chr2R_14443916_14444228;chr2R_14444490_14445307 chr2R_14444229_14444489 chr2R_14441641_14443915;chr2R_14445308_14445521 23.40 30.77 15.38 4.55 7.69 18.18 12.50 33.33 24.14 36.36 44.44 24.14 NA 23.08 14.29 37.50 33.33 10.00 29.41 29.41 NA 11.43 26.32 25.00 15.38 13.33 18.18 17.39 19.23 40.00 15.00 25.00 39.13 22.22 28.57 18.75 22.73 13.33 15.00 23.40 46.67 12.00 20.00 46.67 16.00 52.63 31.25 32.26 22.73 29.41 13.04 26.67 15.79 25.00 21.43 41.67 27.27 39.13 K multi_cassette CG40263,F_chr2RHet_1265687_1293040,F_chr2RHet_1298459_1298703,F_chr2RHet_1298459_1311408,F_chr2RHet_1298885_1299622,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1265687_1324445 chr2RHet_1265687_1293055;chr2RHet_1293175_1293235;chr2RHet_1293394_1324445 chr2RHet_1293056_1293174;chr2RHet_1293236_1293393 chr2RHet_1265587_1265686;chr2RHet_1324446_1324530 64.95 62.50 70.97 53.33 77.78 63.33 57.14 66.67 72.60 60.00 NA 64.91 76.47 78.12 80.56 66.67 86.21 73.33 63.41 92.86 62.50 60.00 65.00 60.00 40.00 60.00 83.33 33.33 41.67 80.00 81.58 60.00 50.00 74.24 53.85 41.67 71.43 71.43 70.00 82.05 22.22 72.73 75.86 74.07 33.33 57.14 57.89 90.00 74.60 35.71 82.86 71.43 36.36 53.85 87.50 52.63 45.45 32.43 K alternative_donor CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_239007_239078 chr4_239007_239071 chr4_238874_239006;chr4_239079_239137 95.65 100.00 96.30 95.08 93.33 96.43 96.36 95.10 95.88 88.89 95.24 96.30 97.30 90.24 95.65 95.83 100.00 96.00 90.32 94.31 94.74 92.50 91.67 96.43 89.47 94.12 93.94 92.86 84.00 87.10 94.67 97.78 93.48 96.47 97.14 100.00 95.83 95.65 100.00 97.96 91.18 97.44 93.55 95.45 96.00 93.10 100.00 100.00 96.91 97.22 98.25 100.00 91.89 94.87 95.56 97.22 94.20 95.12 K intron_retention Art3,I_chr3R_11054902_11054955 chr3R - chr3R_11054902_11054965 chr3R_11054901_11054902;chr3R_11054965_11054966 chr3R_11054802_11054901;chr3R_11054966_11055055 3.85 5.26 0.00 14.29 0.00 0.00 2.78 8.00 0.00 0.00 0.00 4.08 13.33 4.35 0.00 5.00 7.14 0.00 0.00 3.49 3.85 0.00 5.00 1.92 15.38 15.38 10.00 5.41 7.41 0.00 26.32 5.56 4.76 7.32 3.85 18.18 2.22 2.00 0.00 1.82 30.77 8.33 0.00 1.92 4.35 0.00 0.00 9.52 10.00 9.30 3.33 6.25 2.82 0.00 0.00 7.41 3.45 3.23 K jcn_only_AD stc chr2L + chr2L_15114214_15114299 chr2L_15114235_15114299 chr2L_15114300_15114310;chr2L_15114049_15114213 28.26 35.85 25.81 28.24 18.92 26.74 31.88 32.17 28.26 28.26 35.00 30.18 34.09 34.26 46.88 20.29 32.26 32.58 30.26 31.02 32.00 23.53 25.16 33.11 31.25 28.87 31.79 26.67 48.73 22.09 29.27 19.50 18.08 28.37 21.19 40.58 27.07 32.43 29.19 24.75 30.14 28.09 30.12 23.57 16.23 24.90 16.67 22.18 21.91 26.67 25.65 32.91 29.21 18.82 33.61 27.37 26.92 17.16 K jcn_only_AA CG4267,I_chr2L_2245495_2245550 chr2L + chr2L_2242946_2243564 chr2L_2242946_2243559 chr2L_2242697_2242945;chr2L_2243565_2244415 100.00 97.62 96.55 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.00 97.83 100.00 100.00 100.00 94.29 97.62 100.00 97.92 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.86 100.00 100.00 100.00 100.00 100.00 96.51 100.00 98.95 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Hrb27C,I_chr2L_6924401_6924743 chr2L + chr2L_6920862_6923783 chr2L_6920861_6920862;chr2L_6923783_6923784 chr2L_6920793_6920861;chr2L_6923784_6924400 2.74 0.00 3.57 6.98 0.00 5.66 2.27 1.12 4.44 NA 10.00 1.72 1.96 5.00 3.33 2.99 0.00 0.00 0.00 NA 0.00 5.71 0.00 0.00 0.00 3.57 6.67 13.04 0.00 5.26 0.00 NA 3.12 1.96 4.00 0.00 0.00 3.85 6.67 9.30 NA 0.00 5.08 0.00 NA 0.00 0.00 4.88 3.49 NA 5.26 6.45 0.00 NA 2.74 NA 0.00 5.13 K cassette vav chrX + chrX_19157989_19163516 chrX_19157989_19163289;chrX_19163399_19163516 chrX_19163290_19163398 chrX_19157914_19157988;chrX_19163517_19163684 100.00 100.00 100.00 97.62 100.00 100.00 97.30 100.00 100.00 97.06 100.00 100.00 95.45 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 76.81 100.00 100.00 97.22 100.00 97.78 96.43 98.15 97.87 100.00 100.00 100.00 100.00 97.30 97.50 100.00 97.87 98.73 100.00 100.00 98.51 100.00 97.87 96.97 100.00 100.00 100.00 100.00 100.00 98.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 K alternative_acceptor CG1161,RI_chr3R_1181273_1181459 chr3R + chr3R_1181273_1181555;chr3R_1181273_1181515 chr3R_1181273_1181459 chr3R_1181173_1181272;chr3R_1181556_1181559 0.80 0.85 0.63 0.47 0.00 0.00 3.48 0.45 0.83 3.23 0.00 0.35 1.54 0.87 0.54 0.74 0.00 0.00 1.61 0.60 1.19 1.93 0.87 1.01 1.14 2.04 1.06 0.63 1.90 0.79 0.80 0.00 0.00 1.08 0.91 2.44 0.33 0.54 0.71 1.10 1.75 0.34 0.00 1.71 1.52 1.14 0.45 0.00 0.40 1.00 1.03 0.87 0.00 0.00 1.05 0.51 0.00 2.00 K intron_retention l(2)k05819,I_chr2L_4396173_4396266 chr2L + chr2L_4399300_4399353 chr2L_4399299_4399300;chr2L_4399353_4399354 chr2L_4399137_4399299;chr2L_4399354_4399359 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.12 K intron_retention CG6673,CG6662 chr3L - chr3L_8516322_8516500 chr3L_8516321_8516322;chr3L_8516500_8516501 chr3L_8516253_8516321;chr3L_8516501_8516593 0.00 0.00 1.89 0.00 0.00 0.00 0.00 1.23 1.72 0.00 0.00 1.12 0.00 0.00 1.33 0.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 2.82 0.00 2.90 2.70 0.00 2.56 0.00 0.00 0.00 1.37 0.00 0.00 0.00 N alternative_donor cno,I_chr3R_999718_999986,I_chr3R_999737_999777 chr3R - chr3R_1002013_1003015 chr3R_1002013_1002087 chr3R_999987_1002012;chr3R_1003016_1003115 0.00 0.00 0.00 4.00 0.00 0.00 0.00 1.96 1.32 0.00 4.17 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 2.15 0.98 0.00 0.00 0.00 2.00 1.32 1.41 0.00 0.00 0.00 1.15 1.67 1.56 1.37 0.00 0.00 1.25 1.23 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 1.47 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG32549,I_chrX_18286136_18286367,I_chrX_18286289_18286367,RI_chrX_18301919_18303082 chrX - chrX_18286136_18286367;chrX_18286289_18286367 chrX_18286194_18286367 chrX_18286368_18286467;chrX_18286073_18286135 99.28 100.00 100.00 98.70 100.00 100.00 99.36 99.41 99.55 98.70 97.44 98.82 100.00 97.80 100.00 99.27 100.00 98.88 99.10 98.66 100.00 99.66 99.05 99.44 100.00 100.00 98.26 99.52 96.88 98.33 94.69 96.25 98.93 99.34 100.00 97.20 99.33 99.28 99.44 98.10 100.00 99.50 98.88 99.23 99.07 100.00 100.00 100.00 99.47 99.18 98.88 98.88 97.94 99.22 98.23 98.43 100.00 100.00 K intron_retention Mgat1 chr2R - chr2R_16447941_16447997 chr2R_16447940_16447941;chr2R_16447997_16447998 chr2R_16447858_16447940;chr2R_16447998_16448088 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 4.55 NA 55.56 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 10.53 0.00 7.41 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG6236 chr3R - chr3R_11153785_11153849;chr3R_11153785_11153876 chr3R_11153785_11153869 chr3R_11153649_11153784;chr3R_11153877_11153988 5.11 5.00 11.11 3.57 0.00 7.32 7.46 1.80 7.41 3.08 0.00 2.26 7.41 5.00 0.00 2.35 NA 3.85 0.00 5.46 0.00 4.24 6.54 2.35 4.44 8.00 7.96 8.82 6.74 5.13 4.88 6.36 6.48 4.55 6.94 5.80 6.99 9.40 3.16 3.54 5.83 2.40 6.67 3.40 7.78 4.62 4.00 5.19 4.88 7.50 7.41 6.36 5.95 5.08 2.44 6.82 1.05 9.90 K cassette CG10737 chr2R + chr2R_15061627_15062081 chr2R_15061627_15061843;chr2R_15061871_15062081 chr2R_15061844_15061870 chr2R_15061209_15061626;chr2R_15062082_15062288 98.57 98.57 98.46 100.00 98.39 100.00 46.15 97.14 100.00 89.47 98.04 100.00 98.00 100.00 100.00 96.92 100.00 98.57 98.39 97.64 98.00 100.00 98.90 98.46 100.00 98.39 100.00 97.87 97.87 98.33 100.00 100.00 98.57 96.51 100.00 82.54 97.92 98.18 98.81 100.00 97.44 99.29 100.00 100.00 93.94 98.92 95.83 100.00 99.15 97.83 98.81 100.00 98.04 98.44 98.61 98.57 96.39 97.22 K intron_retention CaMKI,I_chr4_466377_467726,I_chr4_467862_471815,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_467662_467726 chr4_467661_467662;chr4_467726_467727 chr4_467466_467661;chr4_467727_467826 3.88 NA NA 13.64 NA NA 0.00 0.00 2.04 NA NA 0.00 0.00 0.00 NA 6.67 5.88 NA 7.69 0.00 7.69 NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 6.25 NA NA NA NA NA NA NA 12.00 NA 0.00 NA NA NA NA 5.71 NA 7.14 NA NA NA 15.38 NA NA NA K alternative_acceptor I_chr2L_822032_822857,dock chr2L + chr2L_826508_829304;chr2L_826508_829421 chr2L_826508_829456 chr2L_826008_826507;chr2L_829457_829468 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 2.33 0.00 0.00 3.85 0.00 0.00 0.00 2.38 0.00 5.26 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA tsh,I_chr2L_21836642_21836821 chr2L + chr2L_21836642_21836821 chr2L_21836642_21836816 chr2L_21836542_21836641;chr2L_21836822_21836921 99.39 100.00 100.00 99.38 100.00 98.44 99.14 99.28 99.33 100.00 100.00 100.00 98.67 100.00 100.00 99.39 100.00 99.01 98.92 100.00 98.63 98.39 99.24 100.00 98.57 100.00 97.40 97.92 98.78 100.00 98.61 99.39 98.48 98.73 100.00 100.00 100.00 100.00 100.00 99.39 100.00 98.91 97.40 99.18 98.35 99.23 99.39 98.38 100.00 98.31 100.00 100.00 97.40 100.00 100.00 98.92 100.00 100.00 K intron_retention CG31638,I_chr2L_6494875_6494937 chr2L + chr2L_6495105_6495243 chr2L_6495104_6495105;chr2L_6495243_6495244 chr2L_6494938_6495104;chr2L_6495244_6495308 20.00 30.77 23.53 28.00 12.50 NA 17.65 35.71 19.23 NA NA 20.00 NA 17.65 NA 29.17 13.33 10.53 23.08 26.09 10.00 9.68 30.00 23.81 NA NA 29.41 NA 4.00 7.69 NA 20.00 9.52 22.73 7.14 12.50 5.26 13.33 12.00 18.75 30.77 17.65 NA NA NA 25.00 22.22 23.53 25.81 23.53 15.38 NA 26.32 14.29 31.25 23.08 NA 17.24 K alternative_last_exon RI_chr3L_21188731_21188785,CG33054,CG33056,noncoding_13933 chr3L - chr3L_21191204_21195847 chr3L_21193615_21195847 chr3L_21190860_21191203 chr3L_21193095_21193614 chr3L_21195848_21195859 62.07 55.36 66.07 69.81 64.71 60.42 60.38 63.86 66.98 68.42 56.76 54.22 50.00 67.39 54.72 73.68 62.79 40.91 67.92 71.93 41.18 56.36 83.33 62.32 40.00 59.38 57.14 75.00 46.15 53.85 66.18 53.06 48.08 70.51 61.90 36.67 66.18 60.78 63.38 65.12 56.76 65.69 68.75 53.33 64.52 59.46 64.79 57.89 70.10 62.07 67.09 64.29 62.07 48.94 66.67 61.90 55.32 67.62 K intron_retention CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_155591_155927,I_chr4_157014_157316,RI_chr4_157014_157504,I_chr4_157794_157864 chr4 + chr4_154340_154420 chr4_154339_154340;chr4_154420_154421 chr4_154254_154339;chr4_154421_154550 53.33 61.54 69.23 46.88 NA 53.33 38.30 72.09 49.23 NA NA 57.69 26.09 70.83 60.00 54.84 50.00 35.71 71.43 52.38 NA NA 50.00 35.29 NA NA 63.64 NA NA 23.53 NA NA NA 56.10 61.54 NA NA NA NA 33.33 NA 59.09 44.44 53.85 NA 36.36 NA NA 55.81 NA 41.67 50.00 NA NA 88.89 NA NA NA K multi_cassette AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9003790_9007675 chrX_9003790_9004650;chrX_9005039_9005114;chrX_9005177_9005419;chrX_9005562_9005630;chrX_9005820_9005886;chrX_9006126_9006195;chrX_9006273_9007675 chrX_9004651_9005038;chrX_9005115_9005176;chrX_9005420_9005561;chrX_9005631_9005819;chrX_9005887_9006125;chrX_9006196_9006272 chrX_9003721_9003789;chrX_9007676_9007775 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.18 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 96.15 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG11134,CG11151 chrX + chrX_13632410_13632472 chrX_13632409_13632410;chrX_13632472_13632473 chrX_13632189_13632409;chrX_13632473_13632943 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9785143,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9770053_9788941 chr2R_9770053_9781634;chr2R_9782098_9782343;chr2R_9782475_9786954;chr2R_9787177_9787870;chr2R_9787955_9788941 chr2R_9781635_9782097;chr2R_9782344_9782474;chr2R_9786955_9787176;chr2R_9787871_9787954 chr2R_9769906_9770052;chr2R_9788942_9789041 57.89 57.89 54.55 65.38 67.35 65.00 53.10 61.17 66.10 62.90 47.54 50.39 92.98 63.38 67.65 52.04 41.56 61.67 58.33 52.63 50.00 44.74 58.59 65.31 50.00 69.49 70.59 88.06 65.31 57.35 53.85 50.00 51.19 62.83 53.85 74.58 68.57 55.56 65.08 67.57 41.67 61.42 63.64 50.00 75.00 37.50 37.50 51.47 71.43 30.00 66.22 57.58 57.89 50.00 65.48 40.00 30.00 53.85 K jcn_only_AD CG4699 chr3R + chr3R_11619772_11620550;chr3R_11619570_11620550;chr3R_11619776_11620550;chr3R_11619676_11620550 chr3R_11619752_11620550 chr3R_11620551_11621301;chr3R_11619539_11619569 0.00 0.00 0.00 2.99 0.00 4.88 2.08 1.54 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 1.20 1.96 2.94 3.33 0.00 0.00 0.00 3.12 2.17 NA 5.41 2.47 2.13 0.00 0.00 0.00 0.00 0.00 0.00 2.82 2.17 3.70 3.70 4.55 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 6.45 4.00 4.76 K cassette CG32809,I_chrX_1576304_1577129,I_chrX_1576463_1577129,I_chrX_1576815_1577129,I_chrX_1577031_1577129,CEI_chrX_1579569_1579679,RI_chrX_1585391_1586471,I_chrX_1589508_1589564 chrX - chrX_1576304_1577129 chrX_1576304_1576399;chrX_1576463_1577129 chrX_1576400_1576462 chrX_1576204_1576303;chrX_1577130_1577229 100.00 100.00 100.00 100.00 NA 100.00 100.00 87.50 100.00 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 90.91 90.00 93.33 NA 92.31 100.00 91.67 100.00 100.00 NA 100.00 94.74 NA 92.31 100.00 100.00 100.00 100.00 NA 95.45 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 N jcn_only_AD myoglianin,RI_chr4_712986_714006,RI_chr4_716066_716482,RI_chr4_716153_716613 chr4 - chr4_715043_716322;chr4_715043_716708;chr4_715043_716482;chr4_715043_716613 chr4_715043_715839 chr4_714007_715042;chr4_716709_716712 74.07 75.00 89.29 67.14 71.43 80.65 72.09 55.68 69.33 NA 89.47 60.00 29.82 69.09 76.00 63.95 74.14 71.43 72.73 60.56 85.71 NA 71.88 NA NA 78.26 81.25 NA NA 74.07 57.50 NA NA 64.29 NA 85.71 80.77 NA NA 83.02 NA 71.62 77.78 78.95 NA NA NA 88.00 72.58 NA 81.82 70.37 NA NA 78.26 NA NA 85.71 K jcn_only_AA CG8531,RI_chr2R_10144869_10144912 chr2R + chr2R_10144869_10144925 chr2R_10144869_10144912 chr2R_10144769_10144868;chr2R_10144926_10145012 0.59 0.00 0.00 1.76 0.98 0.00 0.44 0.85 1.53 0.70 0.00 0.00 0.00 0.00 0.00 0.00 1.40 0.00 0.00 0.59 0.00 0.56 1.12 0.00 0.00 1.20 0.97 0.43 0.40 0.90 0.92 0.64 0.26 0.44 0.68 0.00 1.23 0.57 0.00 0.93 1.81 0.66 0.80 0.00 0.79 1.04 0.70 0.65 1.29 0.98 0.45 0.68 0.00 0.00 0.60 0.63 0.45 0.86 K intron_retention Atu chr3R + chr3R_1440197_1440296 chr3R_1440196_1440197;chr3R_1440296_1440297 chr3R_1439410_1440196;chr3R_1440297_1441656 0.00 0.00 0.00 0.00 0.00 0.00 4.88 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 9.26 0.00 0.00 4.35 1.32 3.23 12.50 0.00 0.00 0.00 3.23 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 2.86 0.00 0.00 3.12 0.00 3.51 0.00 0.00 0.00 0.00 0.00 0.00 3.17 8.70 3.23 0.00 0.00 0.00 4.88 0.00 0.00 0.00 K intron_retention DCAP,RI_chr2R_6183553_6192101,I_chr2R_6188094_6192101 chr2R + chr2R_6181267_6181365 chr2R_6181266_6181267;chr2R_6181365_6181366 chr2R_6181201_6181266;chr2R_6181366_6181431 3.09 NA 0.00 NA NA 0.00 NA 0.00 7.50 NA NA 5.13 16.67 NA 17.65 0.00 5.56 20.00 14.29 5.77 NA NA NA 0.00 NA NA 28.57 NA 35.71 NA 0.00 NA 0.00 11.76 NA 12.50 9.09 NA 0.00 3.33 NA 6.25 NA 0.00 0.00 0.00 0.00 4.76 8.57 NA 0.00 NA 0.00 NA 0.00 NA 0.00 2.86 K intron_retention 5PtaseI,RI_chr3R_20866598_20868366,I_chr3R_20870012_20870243 chr3R - chr3R_20868404_20868947 chr3R_20868403_20868404;chr3R_20868947_20868948 chr3R_20868367_20868403;chr3R_20868948_20869187 0.00 NA NA 0.00 NA NA NA 15.79 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 17.65 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_donor wdb,I_chr3R_23394314_23406731,I_chr3R_23394314_23406794,I_chr3R_23394314_23407159,RI_chr3R_23394314_23407186,I_chr3R_23394314_23407412,I_chr3R_23394314_23407715,I_chr3R_23394314_23407721,RI_chr3R_23406048_23406731,RI_chr3R_23406048_23406794,I_chr3R_23406048_23406928,RI_chr3R_23406048_23407402 chr3R - chr3R_23406048_23406928;chr3R_23406048_23407402;chr3R_23406048_23407723 chr3R_23406048_23406865 chr3R_23405948_23406047;chr3R_23407724_23407815 16.67 16.67 17.24 8.11 15.38 10.00 33.33 18.92 23.26 8.33 15.38 22.22 25.00 20.83 10.34 32.00 14.29 19.05 18.75 16.67 26.92 34.57 16.67 6.45 14.81 7.89 20.59 25.00 9.30 19.23 13.04 15.79 23.08 20.59 22.22 15.38 10.71 8.33 10.00 20.83 11.54 22.22 17.65 15.00 13.64 21.74 18.75 15.56 23.26 8.70 14.63 11.76 16.67 20.00 21.43 15.79 15.38 12.50 K jcn_only_AA CG3651,I_chr2L_22124217_22124661,I_chr2L_22124698_22124781 chr2L + chr2L_22124217_22124786;chr2L_22124217_22124781 chr2L_22124217_22124661 chr2L_22124117_22124216;chr2L_22124787_22124881 0.50 0.00 0.00 0.80 0.73 1.60 0.45 0.95 0.00 0.00 0.85 0.75 0.79 0.00 0.61 1.72 0.77 1.06 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.63 1.72 0.85 0.00 0.00 0.00 0.50 0.00 0.43 0.81 0.00 0.52 1.28 0.00 0.62 0.48 0.34 1.01 0.55 0.89 0.33 0.58 0.31 0.82 1.81 0.00 0.69 2.41 1.26 0.51 0.00 0.00 0.00 K alternative_acceptor bol,RI_chr3L_9117011_9118271 chr3L - chr3L_9117011_9118271;chr3L_9116877_9118271 chr3L_9116901_9118271 chr3L_9118272_9118272;chr3L_9116716_9116876 25.00 NA NA NA NA NA NA NA 28.57 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA Ugt36Bc chr2L + chr2L_16799134_16799680 chr2L_16799134_16799660 chr2L_16799029_16799133;chr2L_16799681_16800520 16.70 NA NA NA NA NA 33.33 NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA 19.15 14.71 10.71 17.39 NA 29.03 18.92 30.43 21.74 10.71 NA 13.04 NA NA 27.78 NA NA NA 21.43 41.18 8.33 NA 15.38 NA 2.94 NA 12.00 NA NA 15.91 16.00 NA NA NA NA 23.08 NA K alternative_last_exon kay,noncoding_19957,E_chr3R_25616137_25617114 chr3R + chr3R_25593310_25617114 chr3R_25593310_25603466 chr3R_25617115_25617442 chr3R_25603467_25603993 chr3R_25593214_25593309 11.63 6.58 13.73 17.71 12.70 13.11 26.92 17.50 12.70 8.51 15.79 13.19 15.79 17.07 12.99 16.00 11.63 13.85 13.33 8.77 14.81 6.56 5.92 5.00 5.38 22.73 10.87 10.10 11.90 6.93 14.29 6.82 7.95 14.29 11.94 15.00 2.88 5.05 4.61 7.30 10.53 13.08 13.95 5.94 3.66 3.77 2.41 15.00 16.35 2.20 5.22 7.69 6.82 1.89 11.67 1.47 4.35 13.79 K alternative_acceptor CG32767,RI_chrX_4978019_4978605 chrX - chrX_4976273_4978605 chrX_4978019_4978605 chrX_4978606_4978705;chrX_4975519_4976272 30.00 25.00 20.00 30.00 33.33 20.00 22.22 15.38 21.43 50.00 NA 30.00 14.29 22.22 20.00 18.18 20.00 42.86 42.86 28.57 20.00 37.50 9.09 NA 20.00 33.33 25.00 100.00 66.67 40.00 66.67 100.00 66.67 23.08 10.00 33.33 25.00 NA 50.00 22.22 100.00 42.86 20.00 50.00 50.00 33.33 25.00 50.00 27.27 NA 25.00 NA 33.33 NA 33.33 50.00 NA 33.33 K jcn_only_AA l(1)G0334,I_chrX_4596624_4596856,I_chrX_4596625_4596762 chrX + chrX_4596625_4596856 chrX_4596625_4596724 chrX_4596525_4596624;chrX_4596857_4596862 22.73 19.08 18.39 28.12 11.11 20.00 54.20 23.10 24.28 29.82 27.41 30.74 28.91 20.14 16.43 23.61 22.29 20.81 30.72 28.98 23.88 22.45 18.84 21.09 41.67 38.52 14.66 15.38 27.08 20.99 18.22 28.74 19.27 22.84 20.69 72.06 24.30 19.05 27.86 21.35 50.00 25.45 17.14 24.53 20.83 27.71 26.87 26.85 21.50 15.38 23.40 20.00 13.79 35.79 21.97 15.97 22.73 15.13 K alternative_donor I_chr2R_9844856_9845327,CG13349,RI_chr2R_9846641_9846709 chr2R - chr2R_9847615_9847752;chr2R_9847615_9847823 chr2R_9847615_9847732 chr2R_9847073_9847614;chr2R_9847824_9847834 96.43 100.00 100.00 100.00 100.00 100.00 97.67 97.83 100.00 90.00 100.00 97.73 100.00 100.00 93.75 95.12 96.30 95.83 100.00 94.64 96.43 96.43 100.00 95.24 100.00 96.30 100.00 100.00 100.00 70.00 96.15 88.89 90.91 95.45 100.00 92.86 100.00 95.00 100.00 75.00 88.89 91.07 92.31 90.91 94.74 88.46 100.00 87.50 98.08 97.67 100.00 93.33 93.75 94.44 93.33 100.00 100.00 61.11 K intron_retention Cap-G chr2R + chr2R_9029323_9029605 chr2R_9029322_9029323;chr2R_9029605_9029606 chr2R_9029167_9029322;chr2R_9029606_9030325 18.37 17.50 14.29 15.79 17.39 22.22 17.65 17.07 16.13 14.29 12.50 19.05 21.74 10.71 15.15 18.75 14.29 16.67 12.90 28.95 16.67 22.73 15.69 10.64 33.33 20.00 18.37 29.03 42.86 18.92 20.00 31.25 20.45 9.62 22.22 16.13 7.69 18.18 15.79 20.29 20.00 15.69 13.04 25.00 26.83 24.32 19.61 36.11 10.17 13.56 19.05 20.00 20.83 19.23 15.38 20.83 7.32 29.41 K jcn_only_AA CG8920 chr2R + chr2R_16213043_16213121 chr2R_16213043_16213100 chr2R_16212894_16213042;chr2R_16213122_16213478 100.00 100.00 98.31 98.82 100.00 100.00 98.59 100.00 99.23 96.55 100.00 100.00 100.00 100.00 98.00 100.00 100.00 97.83 100.00 99.10 97.14 100.00 100.00 96.97 100.00 100.00 100.00 100.00 98.15 96.97 96.23 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.63 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 98.78 98.68 98.80 100.00 100.00 100.00 98.39 98.21 100.00 100.00 K intron_retention CG14222,RI_chrX_19516298_19516372,e(y)3 chrX - chrX_19516298_19516367 chrX_19516297_19516298;chrX_19516367_19516368 chrX_19516236_19516297;chrX_19516368_19516504 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 4.26 4.60 0.00 0.00 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Oscp,I_chr3R_11091413_11092154 chr3R + chr3R_11091413_11092154 chr3R_11092093_11092154 chr3R_11092155_11092254;chr3R_11091313_11091412 100.00 100.00 99.71 99.72 100.00 99.66 99.70 99.52 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.70 100.00 99.34 100.00 99.87 99.64 100.00 100.00 100.00 99.64 99.63 99.78 100.00 100.00 100.00 100.00 100.00 99.64 100.00 100.00 100.00 100.00 99.79 100.00 100.00 100.00 99.71 100.00 99.76 99.76 99.79 100.00 99.60 100.00 99.72 99.80 100.00 100.00 100.00 99.70 100.00 100.00 100.00 K jcn_only_AA CG10375 chr3R + chr3R_19593593_19593800 chr3R_19593593_19593730 chr3R_19593346_19593592;chr3R_19593801_19594051 91.55 100.00 90.48 95.06 93.75 78.79 97.56 96.84 88.46 NA 100.00 91.43 100.00 83.33 84.21 91.94 97.06 100.00 100.00 96.67 100.00 89.29 86.36 90.48 100.00 100.00 93.75 96.15 NA 76.19 78.75 78.57 NA 90.32 95.83 92.31 86.96 96.67 81.58 75.68 96.55 95.89 94.59 89.29 NA 87.18 82.50 NA 92.96 91.30 81.25 91.67 75.86 84.00 90.74 94.44 90.57 80.95 K intron_retention I_chr3L_252776_253313,Tudor-SN,psnoRNA:tudor-SN-a chr3L - chr3L_259914_260310 chr3L_259913_259914;chr3L_260310_260311 chr3L_259286_259913;chr3L_260311_261746 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.28 0.00 0.00 0.00 0.41 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.92 2.59 0.00 0.00 0.00 0.33 0.00 0.45 0.44 0.00 0.00 0.54 0.00 0.22 0.00 0.68 0.00 0.00 0.63 0.00 0.33 0.93 0.36 0.00 1.12 0.00 0.00 0.00 0.00 0.26 0.00 0.59 K alternative_last_exon CG5946 chr3L - chr3L_11810417_11811187 chr3L_11810753_11811187 chr3L_11809974_11810416 chr3L_11810489_11810752 chr3L_11811188_11811287 0.00 0.00 0.00 0.99 0.00 0.00 1.14 0.00 0.73 0.00 0.00 0.00 0.00 1.61 1.16 0.00 0.00 0.00 0.00 0.00 0.00 2.00 1.05 1.08 0.00 0.00 1.03 3.12 0.00 0.00 0.00 1.67 1.59 0.00 0.00 2.08 1.04 0.00 0.83 0.00 0.00 0.00 0.00 1.23 1.23 0.86 1.28 0.00 0.75 0.00 0.88 1.82 0.00 0.00 0.00 0.95 1.03 0.00 K cassette CG17082,R_chr2R_642176_644740,I_chr2R_644094_644145,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_637019_643675 chr2R_637019_642004;chr2R_642176_643675 chr2R_642005_642175 chr2R_636951_637018;chr2R_643676_643764 100.00 96.97 97.83 98.85 100.00 97.14 98.95 98.81 98.90 100.00 100.00 98.55 100.00 97.92 97.83 98.77 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 97.78 100.00 100.00 85.71 100.00 100.00 95.65 100.00 98.95 96.77 96.97 94.74 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 K jcn_only_AD Pegarn chr3L + chr3L_12788186_12788262 chr3L_12788189_12788262 chr3L_12788263_12788330;chr3L_12788120_12788185 95.45 95.92 94.44 93.75 NA NA 96.30 97.14 96.97 91.67 93.10 88.89 NA 95.45 96.88 95.24 NA 100.00 92.00 96.25 100.00 97.67 96.83 94.55 89.66 NA 92.31 94.44 NA 95.45 NA NA 95.00 95.12 91.18 100.00 95.65 97.50 95.29 85.11 NA 88.10 NA 97.37 96.15 95.65 96.43 96.77 96.05 94.83 97.44 94.74 92.59 91.67 95.74 100.00 91.67 87.80 K intron_retention noncoding_23420,hep chrX - chrX_12977132_12979628 chrX_12977131_12977132;chrX_12979628_12979629 chrX_12976641_12977131;chrX_12979629_12979784 36.18 NA NA NA NA NA 52.94 45.45 36.00 NA NA 50.00 NA 36.36 50.00 NA NA NA NA 30.77 NA NA 16.67 NA NA NA NA 7.14 NA NA NA NA NA 46.15 NA 41.67 0.00 NA NA 17.65 NA 40.00 NA NA NA NA NA NA 28.57 NA 22.73 NA NA NA NA NA NA NA K intron_retention RpL27,I_chr3R_21510239_21510298,RI_chr3R_21510239_21510441,I_chr3R_21510239_21510464,I_chr3R_21510239_21510656,I_chr3R_21510239_21510726 chr3R - chr3R_21510239_21510739 chr3R_21510238_21510239;chr3R_21510739_21510740 chr3R_21510139_21510238;chr3R_21510740_21510745 7.14 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.56 NA 0.00 NA NA NA NA NA 42.86 17.39 10.53 NA 0.00 0.00 NA NA NA NA NA NA 8.00 5.26 13.64 NA 7.14 0.00 16.67 NA 4.76 17.65 NA NA NA NA NA NA NA NA 7.14 N alternative_donor bchs,I_chr2L_5907926_5908312 chr2L + chr2L_5907288_5908312;chr2L_5907644_5908312 chr2L_5907926_5908312 chr2L_5908313_5908412;chr2L_5907175_5907287 2.56 3.12 0.00 1.72 4.76 0.00 2.08 3.23 4.71 0.00 0.00 2.99 3.03 2.56 1.89 2.78 7.41 6.67 2.94 2.56 3.03 2.17 4.17 0.00 4.55 2.78 4.76 0.00 4.35 1.67 1.85 0.00 0.00 3.28 0.00 2.22 6.38 0.00 4.17 3.12 0.00 3.08 0.00 2.17 2.38 1.82 2.44 1.41 3.23 7.14 3.70 3.85 0.00 0.00 0.00 5.26 3.45 0.00 K intron_retention msn,I_chr3L_2558033_2560115,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2558036_2560115 chr3L_2558035_2558036;chr3L_2560115_2560116 chr3L_2557936_2558035;chr3L_2560116_2560215 54.58 61.06 46.50 58.29 60.27 47.85 31.78 49.73 64.22 46.28 60.69 56.89 73.00 56.16 50.00 54.20 66.37 63.74 65.25 54.50 60.54 67.42 56.99 58.31 60.18 58.06 50.20 45.32 62.36 50.22 58.56 48.33 29.29 54.58 53.93 50.63 72.35 47.81 60.37 55.25 28.41 53.42 54.55 57.74 38.41 42.56 55.70 37.50 59.03 53.79 53.76 53.67 51.30 60.89 56.16 58.64 48.47 31.54 K jcn_only_AD cact,RI_chr2L_16314859_16315116,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16325055_16325577;chr2L_16325055_16325493 chr2L_16325055_16325587 chr2L_16324333_16325054;chr2L_16325588_16325598 0.00 0.00 0.00 0.88 0.00 0.00 1.25 0.00 0.52 0.00 1.59 0.52 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 1.04 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 2.56 0.00 0.00 0.00 0.00 0.75 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention G-oalpha47A chr2R + chr2R_6325612_6326879 chr2R_6325611_6325612;chr2R_6326879_6326880 chr2R_6325496_6325611;chr2R_6326880_6326950 7.14 NA NA NA NA NA NA NA 0.00 NA NA 7.14 NA NA NA 0.00 NA NA NA NA NA NA 8.33 NA NA NA NA NA NA NA 5.00 NA NA 6.67 NA NA NA NA NA 9.52 NA NA NA 22.22 NA NA NA NA NA NA 17.65 NA NA NA NA NA NA NA K alternative_donor msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585733_2586402;chr3L_2585733_2586036 chr3L_2585733_2586413 chr3L_2585639_2585732;chr3L_2586414_2586502 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17715,I_chr2L_22741825_22741944,RI_chr2L_22742106_22742215,I_chr2L_22742106_22746918 chr2L + chr2L_22741988_22742037 chr2L_22741987_22741988;chr2L_22742037_22742038 chr2L_22741949_22741987;chr2L_22742038_22742044 0.00 0.00 0.00 1.30 0.00 0.00 0.00 1.98 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.36 0.00 0.00 0.00 0.00 0.00 0.00 9.23 6.06 0.00 0.00 1.61 0.00 0.00 1.67 0.00 6.45 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD RpL6 chr3R - chr3R_27421324_27421769;chr3R_27421324_27421603 chr3R_27421324_27421398 chr3R_27421243_27421323;chr3R_27421770_27422070 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG5521 chr3R + chr3R_22795518_22796048;chr3R_22795518_22796373 chr3R_22795518_22796349 chr3R_22795407_22795517 0.00 NA 0.00 2.86 0.00 NA 3.85 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 3.33 2.44 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 2.70 0.00 NA NA 0.00 NA NA NA K intron_retention Trax,I_chr3R_11188256_11188309 chr3R + chr3R_11188260_11188309 chr3R_11188259_11188260;chr3R_11188309_11188310 chr3R_11187465_11188259;chr3R_11188310_11188409 4.35 2.94 0.00 13.04 0.00 5.56 2.08 4.76 6.10 0.00 6.45 10.20 0.00 4.17 5.88 11.76 3.57 5.56 10.34 5.95 0.00 0.00 8.33 8.51 6.25 0.00 2.94 28.57 9.52 6.67 6.45 0.00 0.00 4.08 0.00 0.00 3.03 7.41 0.00 4.17 5.56 6.56 10.71 5.56 0.00 2.94 4.88 0.00 0.00 4.35 0.00 12.00 6.67 4.35 0.00 3.92 5.26 0.00 K jcn_only_AA spri,I_chrX_10404621_10469422,I_chrX_10413811_10440661,I_chrX_10417598_10440661 chrX - chrX_10417595_10438418 chrX_10417598_10438418 chrX_10438419_10438429;chrX_10417498_10417594 85.00 NA 85.00 NA NA NA 87.50 95.65 88.00 90.91 NA 75.00 NA NA 80.00 95.65 NA NA 80.95 88.64 NA 69.23 92.50 85.00 100.00 91.30 85.00 81.08 100.00 95.45 NA NA 89.29 80.56 NA 81.82 80.77 88.00 82.86 82.93 NA 85.71 NA 78.38 NA 82.61 72.73 78.26 86.21 NA 96.97 NA NA NA NA NA NA NA K intron_retention Lerp chr3R - chr3R_22687071_22687129 chr3R_22687070_22687071;chr3R_22687129_22687130 chr3R_22686923_22687070;chr3R_22687130_22687413 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AA CG17471,RI_chr4_1213397_1214333,RI_chr4_1213397_1216053,RI_chr4_1214248_1214333,I_chr4_1214293_1214333,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1214281_1214333;chr4_1214293_1214333 chr4_1214248_1214333 chr4_1214334_1214402;chr4_1214193_1214247 0.00 3.39 0.00 2.38 0.00 0.00 0.97 0.00 1.75 NA 0.00 3.03 1.69 1.75 0.00 2.25 0.00 1.43 2.56 0.79 0.00 0.00 1.69 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 5.17 0.00 0.00 9.52 0.00 2.63 0.00 0.00 3.03 0.86 0.00 0.00 0.00 1.19 2.99 1.23 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 1.96 K alternative_donor MAPk-Ak2,RI_chrX_5655618_5656137,I_chrX_5656715_5657427,I_chrX_5656715_5657893,I_chrX_5656715_5657974 chrX - chrX_5656715_5658141;chrX_5656715_5658126 chrX_5656715_5658101 chrX_5656615_5656714;chrX_5658142_5658214 15.09 10.00 14.04 17.81 10.20 17.50 11.11 15.73 17.21 7.69 18.60 17.20 5.26 17.78 15.09 11.25 16.28 13.33 18.87 16.84 21.05 11.76 12.12 15.52 13.95 16.67 21.05 15.15 40.00 21.21 17.46 22.22 25.00 17.39 9.68 16.67 9.84 12.00 13.79 11.36 21.74 18.00 14.63 14.29 16.00 18.37 12.00 16.13 16.09 15.00 11.54 13.46 13.89 10.81 14.29 10.20 12.77 10.71 K alternative_acceptor CG4068 chrX - chrX_4822163_4822249 chrX_4822166_4822249 chrX_4822250_4823341;chrX_4821232_4822162 83.64 79.41 84.40 80.87 82.50 81.33 87.95 83.17 84.77 81.82 87.04 84.51 86.15 80.82 86.27 82.61 82.61 78.26 80.56 83.75 83.10 87.50 89.66 86.67 89.80 81.16 84.78 87.41 83.64 83.64 85.71 85.71 88.52 78.15 85.71 82.98 86.24 82.02 84.82 80.30 80.00 81.67 83.93 81.82 83.33 85.71 88.24 87.88 80.00 91.30 76.71 85.37 80.00 73.33 78.35 81.82 94.44 87.50 K intron_retention CG33253,I_chrX_19079481_19079722,I_chrX_19082929_19083066,I_chrX_19083581_19083676 chrX + chrX_19080240_19080310 chrX_19080239_19080240;chrX_19080310_19080311 chrX_19079723_19080239;chrX_19080311_19080476 100.00 100.00 100.00 NA 91.67 100.00 100.00 100.00 96.77 100.00 100.00 95.24 90.91 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 91.67 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 90.00 NA 100.00 100.00 100.00 94.12 100.00 N jcn_only_AA JhI-26,I_chr2R_12177114_12177266 chr2R + chr2R_12178257_12178348;chr2R_12178257_12178308 chr2R_12178257_12178432 chr2R_12177457_12178256;chr2R_12178433_12178520 100.00 100.00 100.00 100.00 100.00 100.00 97.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 81.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD NaCP60E,I_chr2R_20805053_20805170 chr2R + chr2R_20805005_20805170;chr2R_20805053_20805170 chr2R_20805101_20805170 chr2R_20805171_20805270;chr2R_20804953_20805004 90.68 NA NA NA NA NA NA NA 78.57 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 86.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.00 NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG2818 chr2L + chr2L_3714584_3714646;chr2L_3714492_3714646 chr2L_3714574_3714646 chr2L_3714647_3716104;chr2L_3714467_3714491 13.48 4.35 13.64 11.54 NA NA 13.33 26.09 17.39 NA NA 7.69 NA 20.00 9.09 21.74 NA NA 21.74 15.62 NA 1.96 5.26 24.14 13.64 NA 22.22 10.00 NA 0.00 20.00 NA 7.41 25.00 NA NA 6.25 10.71 12.50 13.79 NA 18.00 NA 18.18 NA NA NA NA 27.03 NA 12.50 9.09 NA NA 0.00 NA 16.00 4.17 K intron_retention myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_716153_716627 chr4_716152_716153;chr4_716627_716628 chr4_716072_716152;chr4_716628_716661 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 95.83 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA NA K alternative_donor CG8578 chrX + chrX_15738542_15739359 chrX_15738565_15739359 chrX_15739360_15739501;chrX_15738535_15738541 94.12 NA NA 85.71 NA NA 90.91 NA 94.12 NA NA 100.00 NA NA 100.00 93.33 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 92.31 NA 100.00 NA NA NA NA 91.67 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG4841 chr2L + chr2L_16915622_16915689 chr2L_16915622_16915671 chr2L_16915421_16915621;chr2L_16915690_16915817 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 N intron_retention CG33967 chr3R - chr3R_10528292_10528612 chr3R_10528291_10528292;chr3R_10528612_10528613 chr3R_10526678_10528291;chr3R_10528613_10528911 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 18.99 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 100.00 100.00 K jcn_only_AD sima,I_chr3R_25908044_25935016,F_chr3R_25908044_25945850 chr3R + chr3R_25908044_25935016 chr3R_25930532_25935016 chr3R_25935017_25935116 100.00 98.53 100.00 97.84 100.00 100.00 100.00 99.14 99.25 100.00 97.22 98.54 95.92 100.00 100.00 97.75 100.00 100.00 97.80 97.06 97.83 100.00 100.00 100.00 100.00 97.01 100.00 97.18 100.00 100.00 98.94 100.00 100.00 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 96.83 98.51 100.00 97.37 100.00 98.57 97.85 100.00 98.48 97.78 NA NA 100.00 100.00 100.00 97.30 K cassette Moe,I_chrX_8774434_8791759 chrX - chrX_8769894_8770605 chrX_8769894_8770065;chrX_8770093_8770605 chrX_8770066_8770092 chrX_8769127_8769893;chrX_8770606_8770785 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD ken chr2R + chr2R_19757854_19762447 chr2R_19758404_19762447 chr2R_19762448_19762617;chr2R_19757795_19757853 97.53 96.43 98.31 96.12 86.67 98.08 96.72 97.53 96.61 92.11 97.83 94.74 97.73 98.04 94.92 96.59 97.62 95.83 100.00 96.23 100.00 93.33 99.15 98.55 95.56 100.00 95.70 98.11 94.67 98.08 98.15 92.68 95.95 96.70 96.55 98.18 96.81 97.30 98.73 97.98 100.00 94.25 97.96 100.00 92.50 98.28 96.36 95.95 98.98 95.59 97.80 96.92 100.00 100.00 100.00 98.61 97.87 95.00 K jcn_only_AD CG5793,I_chr3R_16953555_16953842 chr3R + chr3R_16953555_16953842 chr3R_16953777_16953842 chr3R_16953843_16953939;chr3R_16953466_16953554 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 100.00 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA NA NA 100.00 100.00 K cassette Zyx102EF,I_chr4_1079131_1079731,I_chr4_1079131_1080044,I_chr4_1079946_1080044,RI_chr4_1079959_1080044,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1079131_1080044 chr4_1079131_1079726;chr4_1079915_1080044 chr4_1079727_1079914 chr4_1079031_1079130;chr4_1080045_1080072 100.00 96.88 94.44 93.55 100.00 100.00 98.39 96.77 95.83 100.00 95.00 94.92 84.38 100.00 100.00 100.00 96.77 96.55 100.00 96.72 95.24 100.00 96.30 100.00 100.00 100.00 96.88 100.00 93.75 100.00 100.00 94.12 100.00 98.31 100.00 95.00 100.00 100.00 100.00 100.00 100.00 96.61 96.97 100.00 94.12 96.15 100.00 100.00 100.00 100.00 96.55 95.00 100.00 100.00 94.44 95.65 100.00 96.67 K intron_retention CG14872,REI_chr3R_11334285_11334336 chr3R - chr3R_11335393_11335474 chr3R_11335392_11335393;chr3R_11335474_11335475 chr3R_11334934_11335392;chr3R_11335475_11335639 0.00 0.00 0.00 0.00 0.00 2.33 3.60 1.27 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 3.49 2.41 0.00 0.00 4.40 0.00 0.00 0.00 0.00 0.00 0.00 1.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4495 chr2L + chr2L_7182640_7182706 chr2L_7182639_7182640;chr2L_7182706_7182707 chr2L_7182200_7182639;chr2L_7182707_7182899 0.00 0.00 0.00 3.33 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 K intron_retention RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12914845_12916177 chr2R_12914844_12914845;chr2R_12916177_12916178 chr2R_12914836_12914844;chr2R_12916178_12916526 7.41 NA NA 0.00 NA NA 4.76 8.33 8.00 NA NA 7.69 NA 4.76 NA 7.41 NA NA NA NA NA 26.32 NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 14.29 NA NA NA NA 13.33 NA 10.53 7.14 NA NA NA NA 3.85 7.41 NA NA NA NA NA 13.33 NA NA 0.00 K alternative_donor CG9386,RI_chr3R_5380786_5380850 chr3R - chr3R_5380786_5380850 chr3R_5380786_5380846 chr3R_5380686_5380785;chr3R_5380851_5380950 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG7504 chr3L - chr3L_8130347_8130422 chr3L_8130366_8130422 chr3L_8130423_8130491;chr3L_8130131_8130346 85.71 NA NA 60.00 NA NA 88.89 81.82 90.00 NA NA 85.71 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 75.00 NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA 87.50 NA NA NA K intron_retention Rrp4 chr2R - chr2R_19443152_19443214 chr2R_19443151_19443152;chr2R_19443214_19443215 chr2R_19442454_19443151;chr2R_19443215_19443735 1.39 1.54 0.00 0.00 1.75 0.00 1.39 0.93 0.00 2.70 7.02 2.61 1.54 0.00 0.00 2.13 0.00 0.00 4.00 0.00 0.00 0.98 2.22 1.23 0.00 0.00 1.04 0.00 4.88 1.32 9.88 2.27 0.51 1.01 2.67 0.00 1.72 2.60 1.71 0.00 1.48 1.45 2.99 2.70 3.82 2.27 2.38 2.86 0.91 1.15 1.80 3.85 1.39 0.00 1.15 4.94 0.00 0.72 K alternative_acceptor CG18624,RI_chrX_7787450_7787620,RI_chrX_7787450_7787687,RI_chrX_7787524_7787687 chrX - chrX_7787450_7787620 chrX_7787524_7787620 chrX_7787621_7787704;chrX_7787424_7787449 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.49 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.65 100.00 100.00 99.60 98.86 100.00 100.00 100.00 100.00 100.00 100.00 98.59 99.15 99.24 99.26 99.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.70 100.00 100.00 99.54 100.00 99.55 100.00 100.00 100.00 100.00 100.00 100.00 99.07 100.00 100.00 99.70 K alternative_donor chic,RI_chr2L_5976783_5980950,I_chr2L_5979705_5979818,I_chr2L_5979705_5979941,RI_chr2L_5979705_5979951,I_chr2L_5979705_5979953,I_chr2L_5979705_5980025,I_chr2L_5979705_5980213,I_chr2L_5979705_5980370,I_chr2L_5979705_5980558,I_chr2L_5979705_5980632,I_chr2L_5979705_5980639,RI_chr2L_5979705_5980734 chr2L - chr2L_5979705_5980952;chr2L_5979705_5980950 chr2L_5979705_5980846 chr2L_5979605_5979704;chr2L_5980953_5981025 6.33 6.90 3.31 4.13 7.69 3.20 12.30 2.60 5.41 10.34 7.50 4.71 6.67 6.06 7.09 6.34 6.33 13.73 4.44 3.80 9.09 2.88 12.90 11.84 12.20 6.19 19.57 10.81 14.05 2.42 5.45 3.05 1.52 3.14 3.85 7.96 14.63 13.04 9.09 4.42 4.95 3.77 3.06 5.51 3.75 5.86 11.54 2.99 3.00 11.67 11.54 8.51 8.16 18.18 2.67 14.29 10.59 3.59 K cassette caz,noncoding_24110,RI_chrX_16183147_16183258,RI_chrX_16183356_16185973 chrX + chrX_16182991_16183258 chrX_16182991_16183059;chrX_16183147_16183258 chrX_16183060_16183146 chrX_16182887_16182990;chrX_16183259_16183355 75.00 76.60 60.87 88.61 50.00 58.33 82.93 81.94 85.00 68.18 50.00 69.88 64.71 73.91 67.86 83.33 63.64 64.29 77.27 77.39 52.63 67.65 71.13 75.96 67.31 57.14 82.00 85.11 50.00 60.78 69.01 59.46 86.27 81.94 78.69 59.18 71.43 79.73 76.27 75.00 68.97 84.27 75.00 95.45 76.00 75.36 85.96 73.47 79.38 79.71 69.14 80.95 91.94 77.78 64.71 85.71 80.82 71.83 K jcn_only_AD TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748981_19749899;chr2R_19748981_19750012;chr2R_19748981_19749783 chr2R_19748981_19749882 chr2R_19748884_19748980;chr2R_19750013_19750013 2.06 0.00 0.00 1.72 3.33 3.33 6.00 3.95 3.17 NA 0.00 2.67 0.00 2.63 2.44 3.64 0.00 0.00 1.92 0.00 0.00 7.14 4.44 3.33 3.85 4.44 2.70 NA 5.00 0.00 2.17 0.00 0.00 1.96 NA 4.35 3.33 0.00 0.00 4.44 8.00 4.29 0.00 2.94 NA 5.56 4.55 2.94 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention RhoL chr3R - chr3R_5323295_5323353 chr3R_5323294_5323295;chr3R_5323353_5323354 chr3R_5322823_5323294;chr3R_5323354_5323524 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.96 1.66 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 1.38 0.30 0.00 0.00 0.00 0.53 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 1.66 0.00 0.00 0.00 0.00 0.00 0.58 0.00 1.06 0.00 0.00 0.00 0.49 1.21 0.00 0.76 0.51 0.00 0.00 0.00 0.45 0.61 0.00 0.32 0.00 K jcn_only_AA I_chrX_1757755_1757801,RI_chrX_1770945_1771037,CG14818,RI_chrX_1773382_1773444,trr,I_chrX_1793073_1794406,RI_chrX_1795648_1795745 chrX - chrX_1773382_1773444 chrX_1773384_1773444 chrX_1773445_1773544;chrX_1773282_1773381 99.15 99.64 98.29 98.98 99.44 99.58 98.91 98.92 99.75 98.77 98.45 98.92 98.58 99.49 99.12 99.23 99.34 100.00 99.06 99.14 95.90 100.00 99.68 98.93 98.99 99.17 99.26 98.83 99.09 98.48 100.00 99.39 99.24 100.00 98.94 98.13 98.52 99.27 99.15 99.67 99.49 99.77 99.31 100.00 98.71 99.42 99.36 100.00 99.24 98.94 98.37 98.30 99.10 98.24 100.00 98.53 98.93 99.23 K alternative_acceptor RI_chr4_683177_684480,Slip1,RI_chr4_684369_684451,RI_chr4_684967_689045,I_chr4_685717_686576,RI_chr4_685717_689045,RI_chr4_687548_689045 chr4 + chr4_684369_684480 chr4_684369_684451 chr4_684313_684368;chr4_684481_684551 0.00 0.00 0.00 2.56 0.00 NA 0.00 2.22 1.12 NA 0.00 3.03 3.03 0.00 0.00 3.57 0.00 NA 3.57 0.00 0.00 0.00 0.00 0.00 NA 6.67 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.00 0.00 7.69 0.00 NA 0.00 0.00 NA 2.63 0.00 0.00 NA 0.00 NA 0.00 2.50 NA 0.00 4.76 NA NA 0.00 6.67 0.00 NA K multi_cassette Adar,RI_chrX_1668256_1669638,RI_chrX_1668256_1669682,I_chrX_1668256_1682696,I_chrX_1674594_1674717 chrX + chrX_1668256_1672644 chrX_1668256_1669731;chrX_1669772_1672405;chrX_1672594_1672644 chrX_1669732_1669771;chrX_1672406_1672593 chrX_1668156_1668255;chrX_1672645_1672732 8.33 NA NA NA NA NA 10.00 4.76 3.70 NA NA NA 15.38 8.33 NA 4.76 NA NA 6.25 13.04 NA 8.33 7.69 NA NA NA NA NA NA NA 10.00 NA NA 8.33 NA NA NA NA NA 12.50 NA 10.00 NA 6.25 NA NA NA NA 15.00 NA NA NA NA NA 4.76 NA NA NA K jcn_only_AD RpL28,RI_chr3L_3221710_3221877,I_chr3L_3221982_3222744,snoRNA:Or-CD11c,snoRNA:Or-CD11b,snoRNA:Or-CD11a,I_chr3L_3222575_3222787 chr3L - chr3L_3221982_3222787;chr3L_3221982_3222152;chr3L_3221982_3222926;chr3L_3221982_3222365;chr3L_3221982_3222847 chr3L_3221982_3222574 chr3L_3221882_3221981;chr3L_3222927_3222958 1.51 0.58 0.84 0.26 1.26 2.04 4.39 0.59 2.96 3.16 1.49 4.30 0.97 4.52 1.06 4.33 1.51 0.61 1.36 0.97 1.26 1.36 4.86 5.52 3.33 0.50 0.83 10.36 0.27 3.38 1.98 0.61 0.15 0.63 2.05 1.65 5.65 0.99 6.35 3.73 0.45 0.85 0.98 3.95 0.42 1.65 4.13 1.12 2.12 7.03 7.32 6.25 0.93 1.83 1.44 4.60 4.35 0.56 K alternative_donor Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11823830_11823896 chr2R_11823830_11823891 chr2R_11823822_11823829;chr2R_11823897_11824085 99.13 100.00 97.56 98.61 100.00 96.30 98.70 97.67 99.13 100.00 96.97 97.37 98.18 100.00 97.67 98.81 100.00 100.00 98.21 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.04 100.00 97.62 96.36 97.22 95.65 98.88 100.00 96.30 100.00 100.00 97.30 98.41 100.00 98.67 97.87 100.00 96.88 97.18 100.00 98.25 98.78 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 K intron_retention I_chr2R_16518342_16520460,I_chr2R_16518620_16518916,RI_chr2R_16520388_16520855,rig chr2R - chr2R_16526002_16526063 chr2R_16526001_16526002;chr2R_16526063_16526064 chr2R_16525848_16526001;chr2R_16526064_16526226 0.00 0.00 0.00 2.13 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention chic,RI_chr2L_5976783_5980950,I_chr2L_5979705_5979818,I_chr2L_5979705_5979941,RI_chr2L_5979705_5979951,I_chr2L_5979705_5979953,I_chr2L_5979705_5980025,I_chr2L_5979705_5980213,I_chr2L_5979705_5980370,I_chr2L_5979705_5980558,I_chr2L_5979705_5980632,I_chr2L_5979705_5980639,RI_chr2L_5979705_5980734 chr2L - chr2L_5979705_5980846 chr2L_5979704_5979705;chr2L_5980846_5980847 chr2L_5979605_5979704;chr2L_5980847_5981025 35.29 25.00 NA 35.00 45.45 NA 32.26 NA 34.62 23.53 NA 33.33 50.00 NA 23.53 31.58 NA 30.00 42.86 35.00 35.71 61.54 41.38 30.77 31.25 41.67 36.84 61.11 33.33 46.15 50.00 NA 31.25 35.71 40.00 34.21 52.94 35.00 52.63 37.50 20.00 46.15 NA 52.63 NA 18.42 22.73 36.36 40.91 35.71 41.18 38.46 21.43 24.14 NA 27.27 35.29 13.64 K intron_retention gish chr3R + chr3R_12098804_12100140 chr3R_12098803_12098804;chr3R_12100140_12100141 chr3R_12098798_12098803;chr3R_12100141_12100597 98.18 97.06 97.22 98.59 96.15 100.00 98.97 98.99 97.25 100.00 97.06 98.70 98.31 98.18 100.00 97.06 93.18 100.00 94.44 98.53 100.00 100.00 97.62 100.00 96.97 96.88 100.00 100.00 96.77 100.00 98.33 94.12 93.33 96.77 97.22 100.00 96.67 100.00 95.83 100.00 97.22 98.72 98.00 100.00 91.67 96.88 100.00 98.28 97.92 94.44 97.78 97.30 100.00 100.00 98.48 100.00 94.12 87.50 K intron_retention Trxr-1 chrX + chrX_8140473_8140542 chrX_8140472_8140473;chrX_8140542_8140543 chrX_8140127_8140472;chrX_8140543_8140769 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG40263,F_chr2RHet_1265687_1293040,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1265687_1324445;chr2RHet_1265687_1292103;chr2RHet_1265687_1293055 chr2RHet_1265687_1286307;chr2RHet_1286572_1324445,chr2RHet_1286572_1292103,chr2RHet_1286572_1293055 chr2RHet_1286308_1286571 chr2RHet_1265587_1265686;chr2RHet_1324446_1324530 21.88 21.28 18.18 20.00 32.26 26.83 23.94 16.94 18.52 36.36 NA 17.95 19.35 18.52 17.50 17.33 20.75 36.00 17.24 49.38 22.22 50.00 26.32 22.41 17.86 22.00 23.08 16.67 17.65 32.00 43.40 31.25 35.29 19.79 10.71 12.50 33.33 21.88 25.71 31.25 13.51 18.89 18.64 18.87 27.27 16.67 22.45 35.71 15.56 19.05 23.21 21.88 23.53 25.00 24.07 26.19 16.98 16.28 K jcn_only_AA CG15134 chr2L + chr2L_16905390_16905550 chr2L_16905390_16905490 chr2L_16905299_16905389;chr2L_16905551_16905594 93.72 85.71 92.59 95.89 94.87 100.00 90.54 88.24 92.54 96.30 95.00 91.30 93.02 92.31 93.02 94.83 98.28 94.55 95.00 89.47 87.18 95.16 83.58 93.33 96.30 100.00 89.13 100.00 88.46 96.77 97.96 NA 90.48 95.88 94.12 96.88 90.91 88.89 89.74 88.52 NA 95.37 93.18 97.87 NA NA NA 86.05 97.70 NA 88.89 100.00 NA NA 94.59 NA NA NA K jcn_only_AD SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_16982134_16983159 chr3R_16982199_16983159 chr3R_16983160_16983379;chr3R_16982126_16982133 0.00 NA NA 0.00 NA NA 8.33 0.00 0.00 NA NA 0.00 0.00 9.52 NA 0.00 NA NA NA 2.70 NA NA NA NA NA NA NA NA NA NA 4.17 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention CG9576 chrX - chrX_20055909_20055972 chrX_20055908_20055909;chrX_20055972_20055973 chrX_20054437_20055908;chrX_20055973_20056475 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG2249,RI_chr2R_5937150_5937205 chr2R + chr2R_5937150_5937257 chr2R_5937150_5937205 chr2R_5937050_5937149;chr2R_5937258_5937305 0.47 0.33 0.37 0.59 0.88 0.60 0.23 0.32 0.18 1.03 0.00 0.22 0.00 0.50 0.56 0.39 0.52 0.54 0.00 0.33 0.30 0.00 0.61 0.00 0.44 0.21 0.77 0.00 1.02 1.81 2.15 0.86 0.00 0.47 1.62 0.35 0.00 0.41 0.48 0.20 1.44 0.34 0.30 0.42 0.79 0.27 0.52 0.55 0.50 1.69 1.20 1.72 0.19 0.53 0.18 0.70 0.85 0.49 K alternative_donor CG16974,I_chr2L_13189619_13191526 chr2L - chr2L_13189619_13191903 chr2L_13189619_13191526 chr2L_13189519_13189618;chr2L_13191904_13192008 0.00 1.85 0.00 0.00 0.00 0.00 0.62 0.00 0.30 0.00 0.00 0.75 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.65 0.00 1.75 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K intron_retention e(r) chrX - chrX_8799622_8800141 chrX_8799621_8799622;chrX_8800141_8800142 chrX_8799538_8799621;chrX_8800142_8800333 1.39 1.40 1.83 2.55 1.50 2.30 2.53 2.23 1.39 0.00 1.96 2.61 0.77 5.10 1.75 3.23 2.36 2.68 1.54 1.05 0.00 1.49 0.50 1.13 0.00 0.00 0.00 0.00 1.69 1.94 0.00 0.00 0.00 2.89 0.88 0.00 0.00 3.39 2.27 1.55 0.00 1.86 2.27 1.39 0.00 0.00 0.00 0.00 1.90 0.66 1.78 1.28 0.00 0.00 0.00 0.00 0.53 1.41 K intron_retention PP2A-B',RI_chr3R_13993929_13994503 chr3R + chr3R_13993590_13995378 chr3R_13993589_13993590;chr3R_13995378_13995379 chr3R_13993510_13993589;chr3R_13995379_13995820 84.62 83.33 94.12 97.14 94.12 78.57 82.50 85.29 90.00 90.00 94.74 88.89 95.65 81.82 77.78 89.47 83.33 83.33 91.30 94.23 88.89 76.47 85.71 82.61 68.75 93.33 68.18 83.33 68.75 100.00 83.33 90.00 85.71 94.44 90.00 92.86 77.42 83.33 68.18 81.82 87.50 87.80 90.00 80.43 71.43 78.95 88.46 76.92 82.05 54.55 95.24 76.19 93.33 82.35 86.21 78.95 84.62 77.78 K alternative_donor cul-2,I_chr2L_21658962_21659119,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21658855_21659094 chr2L_21658962_21659094 chr2L_21659095_21659272;chr2L_21658557_21658854 55.56 53.06 41.67 39.00 37.50 40.82 64.62 27.88 34.71 73.53 38.64 44.90 25.49 38.18 40.62 30.93 36.11 32.73 33.80 30.00 31.03 75.69 72.73 76.36 82.09 60.00 75.00 88.24 66.13 70.67 41.30 61.54 62.69 42.86 50.00 78.95 66.20 73.33 60.66 60.71 75.00 40.57 38.78 71.43 55.56 58.97 50.00 50.88 33.96 60.78 62.64 65.96 50.00 60.00 43.33 61.54 70.21 62.96 K alternative_donor yrt chr3R - chr3R_9255492_9255914 chr3R_9255492_9255819 chr3R_9254589_9255491;chr3R_9255915_9256472 0.00 NA 0.00 4.76 NA 5.26 0.00 0.00 3.23 NA 5.00 0.00 NA NA 0.00 0.00 12.50 NA 0.00 0.00 0.00 5.88 3.57 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 4.76 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 6.25 3.85 0.00 NA 0.00 0.00 0.00 5.56 0.00 0.00 K jcn_only_AA CG14476,I_chrX_21474758_21476200,I_chrX_21475620_21475965 chrX - chrX_21474758_21476200 chrX_21475620_21476200 chrX_21476201_21476209 100.00 100.00 100.00 95.28 100.00 98.90 99.11 100.00 97.96 100.00 100.00 100.00 100.00 98.80 100.00 100.00 100.00 100.00 100.00 99.07 100.00 97.73 98.63 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 100.00 97.22 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 99.36 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 NA N intron_retention hang,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16324290_16324653 chrX_16324289_16324290;chrX_16324653_16324654 chrX_16324256_16324289;chrX_16324654_16324797 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 80.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA K jcn_only_AD Eb1,I_chr2R_2642491_2642549 chr2R + chr2R_2642487_2642549 chr2R_2642491_2642549 chr2R_2642550_2642622;chr2R_2642404_2642486 0.00 0.00 0.00 0.18 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.34 0.26 0.00 0.41 0.00 0.24 0.18 0.00 0.26 0.28 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.53 0.00 0.79 0.00 0.56 0.57 0.18 0.17 0.30 0.00 0.30 0.25 0.00 0.00 0.13 0.34 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.34 K jcn_only_AD Hsc70Cb chr3L + chr3L_14030212_14030577 chr3L_14030237_14030577 chr3L_14030578_14030850;chr3L_14030158_14030211 90.91 93.33 84.09 80.60 75.00 94.87 96.59 90.59 89.41 95.12 85.19 93.33 92.86 88.24 84.62 93.10 85.14 79.07 80.88 90.51 86.11 90.91 91.53 94.74 100.00 92.00 100.00 93.62 95.79 83.05 80.88 86.44 90.91 88.37 96.00 95.83 96.00 NA NA 98.25 96.94 86.41 90.14 89.47 92.21 88.98 77.27 94.18 90.72 90.00 85.96 100.00 95.00 93.94 83.05 95.24 86.67 93.25 K jcn_only_AD Rab10,I_chrX_20122832_20123581 chrX + chrX_20122832_20123311 chrX_20123028_20123311 chrX_20123312_20123511;chrX_20122732_20122831 1.92 1.59 1.79 2.58 2.29 2.88 1.84 1.23 0.56 4.92 1.64 0.87 0.72 1.90 1.73 2.08 0.00 0.00 0.64 1.23 2.22 1.95 0.91 3.50 1.76 1.35 2.82 5.32 11.00 4.31 4.27 2.27 1.20 1.01 2.38 0.85 2.37 4.52 2.16 5.59 2.53 0.35 1.82 1.52 1.35 4.65 2.47 2.86 0.34 1.43 3.63 2.40 2.73 2.54 1.05 0.62 1.92 5.45 K intron_retention MED6,CG9471,CG12946,I_chr3R_5599701_5600032,I_chr3R_5609682_5609889 chr3R - chr3R_5593601_5593886 chr3R_5593600_5593601;chr3R_5593886_5593887 chr3R_5593583_5593600;chr3R_5593887_5593976 100.00 NA NA 100.00 NA NA 100.00 93.33 NA NA NA 100.00 NA NA 100.00 NA 100.00 NA 90.00 100.00 NA 100.00 NA NA NA NA NA NA 100.00 100.00 100.00 100.00 95.00 92.86 NA NA NA NA NA 95.24 100.00 100.00 NA 75.00 92.86 100.00 NA 100.00 95.00 NA NA NA NA NA 88.89 NA NA 100.00 K alternative_acceptor CG7987,RI_chr3R_10400799_10401492 chr3R - chr3R_10400782_10401492;chr3R_10400799_10401492 chr3R_10400608_10401492 chr3R_10401493_10401559;chr3R_10400270_10400607 36.67 52.50 44.74 47.06 34.62 45.00 31.15 36.54 30.00 18.75 45.45 39.74 3.45 31.71 38.64 50.00 28.57 45.16 25.64 41.46 44.00 48.89 40.30 44.00 32.35 21.21 43.48 46.34 36.67 42.11 52.05 34.62 29.63 36.67 35.29 33.33 26.53 42.86 50.72 25.97 18.18 36.51 30.30 39.29 46.15 30.56 34.29 35.56 37.93 24.14 36.36 28.12 36.36 41.38 44.00 45.45 45.16 36.67 K intron_retention CG8709,I_chr2R_4027128_4027182,I_chr2R_4027682_4027747,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4028122_4028185 chr2R_4028121_4028122;chr2R_4028185_4028186 chr2R_4028019_4028121;chr2R_4028186_4028252 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CAH2 chr3L + chr3L_12175249_12175309 chr3L_12175248_12175249;chr3L_12175309_12175310 chr3L_12174776_12175248;chr3L_12175310_12175537 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.08 0.00 0.00 2.82 4.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG12753,CG14894,RI_chr3R_12268071_12268135,RI_chr3R_12268071_12268141,RI_chr3R_12268071_12268661,Pak3 chr3R - chr3R_12268071_12268145;chr3R_12268071_12268124;chr3R_12268071_12268141;chr3R_12268071_12268135 chr3R_12268071_12268661 chr3R_12267971_12268070;chr3R_12268662_12268688 0.00 1.25 0.00 5.33 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.67 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 1.43 1.32 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette CG32685,CREI_chrX_9967445_9972518 chrX - chrX_9967445_9972518 chrX_9967445_9967909;chrX_9968099_9968170;chrX_9968360_9968426;chrX_9968929_9969008;chrX_9969107_9969176;chrX_9969661_9972518 chrX_9967910_9968098;chrX_9968171_9968359;chrX_9968427_9968928;chrX_9969009_9969106;chrX_9969177_9969660 chrX_9967345_9967444;chrX_9972519_9972618 89.47 95.00 85.00 89.29 92.86 94.12 100.00 89.19 100.00 100.00 100.00 87.88 86.36 100.00 100.00 78.79 84.21 88.89 95.24 89.80 93.75 62.50 93.55 88.46 93.33 100.00 87.50 78.57 89.47 88.89 75.86 59.09 29.09 88.24 75.00 100.00 87.50 100.00 93.33 81.58 76.47 88.10 93.33 86.67 86.96 75.00 90.91 80.65 89.47 81.82 90.32 93.75 94.74 90.48 96.00 100.00 93.33 67.57 K jcn_only_AA tud,I_chr2R_17086183_17086333 chr2R + chr2R_17071303_17071602 chr2R_17071303_17071571 chr2R_17070855_17071302;chr2R_17071603_17071959 99.21 99.38 98.43 99.15 100.00 99.34 99.16 98.72 99.52 100.00 97.86 99.16 98.48 100.00 99.52 98.18 98.36 100.00 99.05 99.66 98.71 99.66 98.75 97.25 99.17 100.00 98.60 99.21 98.96 99.24 99.00 100.00 98.82 98.82 100.00 100.00 98.36 98.68 100.00 99.70 100.00 98.54 100.00 98.27 97.62 98.55 100.00 98.90 100.00 100.00 99.35 100.00 98.51 100.00 98.53 100.00 100.00 100.00 K jcn_only_AD CG3829,I_chr2R_20874677_20875710,I_chr2R_20874711_20875717,I_chr2R_20875172_20875710,I_chr2R_20875497_20875710 chr2R + chr2R_20875172_20875710;chr2R_20875350_20875710;chr2R_20874711_20875710 chr2R_20875497_20875710 chr2R_20875711_20875810;chr2R_20874611_20874710 0.00 NA 1.92 2.94 0.00 3.12 0.00 0.00 2.94 NA 12.00 2.08 0.00 0.00 2.94 0.00 0.00 2.44 3.33 0.00 9.52 0.00 NA NA NA 2.56 NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 6.25 0.00 NA NA 0.00 NA 0.00 2.13 NA NA NA NA NA 0.00 NA NA 0.00 K jcn_only_AA lama,I_chr3L_5346888_5347714 chr3L - chr3L_5340784_5347714 chr3L_5346888_5347714 chr3L_5347715_5347814;chr3L_5340732_5340783 0.00 NA 0.00 0.00 4.76 NA 0.00 0.00 0.00 0.00 NA 2.94 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 4.76 6.00 NA 0.00 NA 0.00 6.38 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 1.67 3.45 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 8.70 0.00 NA NA 0.00 NA NA 2.27 K jcn_only_AD CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27044867;chr3R_27044771_27045188;chr3R_27044771_27045257;chr3R_27044771_27045132;chr3R_27044771_27045027;chr3R_27044771_27045110;chr3R_27044771_27044831;chr3R_27044771_27044895 chr3R_27044771_27044990 chr3R_27044671_27044770;chr3R_27045258_27045273 0.15 0.00 0.17 0.37 0.00 0.00 0.20 0.08 0.00 1.85 0.19 0.13 0.24 0.00 0.12 0.20 0.40 0.15 0.00 0.27 0.23 0.00 0.00 0.00 4.17 0.00 0.00 1.19 0.49 0.00 0.13 0.64 0.18 0.16 0.00 0.00 0.00 3.33 3.23 0.00 1.06 0.00 0.17 0.63 0.17 0.29 2.27 0.19 0.22 0.00 0.00 0.00 0.62 0.00 0.24 0.00 0.00 0.12 K jcn_only_AA CG3309 chrX - chrX_5222140_5222201 chrX_5222143_5222201 chrX_5222202_5223396;chrX_5220670_5222139 90.00 NA NA NA NA NA 71.43 NA 92.86 NA NA 86.36 NA NA NA NA NA NA NA 90.00 NA 80.00 NA NA NA NA 95.65 NA NA NA NA NA NA 95.00 NA NA 92.00 NA 87.10 NA NA NA NA NA NA 100.00 NA NA 82.86 NA NA NA NA NA NA NA NA NA K jcn_only_AA borr chr2L - chr2L_9252339_9252634 chr2L_9252351_9252634 chr2L_9252635_9253116;chr2L_9251942_9252338 89.33 85.71 87.18 80.00 97.30 94.44 90.32 86.11 90.00 90.00 NA 93.59 NA 95.65 94.59 93.10 93.10 100.00 85.71 92.38 96.67 93.22 84.33 87.59 87.34 87.10 89.33 97.73 89.80 89.47 100.00 91.67 71.05 94.44 87.93 89.06 89.86 87.50 85.16 83.16 95.12 86.59 95.83 83.78 77.27 88.46 79.05 87.50 93.42 94.29 80.25 83.33 85.00 90.60 97.67 87.63 81.82 86.49 K alternative_donor R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083458_8089184;chr2L_8083522_8089184;chr2L_8083637_8089184;chr2L_8083687_8089184 chr2L_8083588_8089184 chr2L_8089185_8089284;chr2L_8083444_8083457 9.09 9.09 4.17 12.50 12.50 22.22 6.67 8.89 5.77 0.00 0.00 15.56 5.00 8.33 5.00 12.50 11.11 5.26 3.33 7.89 9.09 16.67 29.41 12.50 9.09 10.53 6.67 12.50 12.12 4.17 11.11 7.69 11.43 2.44 7.69 10.00 14.29 16.67 16.67 7.14 9.09 6.06 8.70 6.67 8.33 5.26 28.57 1.92 12.20 14.29 7.14 14.29 14.29 20.00 7.41 20.00 20.00 12.12 K intron_retention I_chr3L_834336_834491,Gr61a chr3L + chr3L_842359_842410 chr3L_842358_842359;chr3L_842410_842411 chr3L_842164_842358;chr3L_842411_842577 32.05 NA NA 71.43 NA NA NA 33.33 23.08 NA NA 30.77 NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA 60.00 NA NA NA 14.29 NA NA NA NA NA 0.00 NA 33.33 20.00 NA 33.33 NA NA NA NA NA NA NA 27.78 28.57 NA NA 41.67 NA NA NA NA K intron_retention loco,I_chr3R_18448629_18449211,I_chr3R_18456329_18462522 chr3R - chr3R_18448629_18452008 chr3R_18448628_18448629;chr3R_18452008_18452009 chr3R_18448529_18448628;chr3R_18452009_18452034 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 5.26 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA K intron_retention eas,REI_chrX_16172581_16175010,REI_chrX_16172581_16177702,RI_chrX_16173003_16173054 chrX + chrX_16172581_16172726 chrX_16172580_16172581;chrX_16172726_16172727 chrX_16172481_16172580;chrX_16172727_16172794 60.00 NA NA NA NA NA NA 77.78 NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 47.06 NA NA NA NA NA NA NA NA NA K alternative_last_exon CG6364,I_chr3R_20116610_20116825 chr3R + chr3R_20116875_20118559 chr3R_20116875_20117233 chr3R_20118560_20118691 chr3R_20117234_20118452 chr3R_20116826_20116874 96.67 95.83 96.55 96.08 94.74 100.00 92.86 100.00 95.59 100.00 95.00 98.00 100.00 100.00 100.00 100.00 96.00 100.00 96.67 100.00 100.00 83.33 91.43 100.00 95.24 95.65 91.18 100.00 95.24 96.30 97.14 100.00 97.14 100.00 100.00 95.24 95.83 100.00 89.29 97.67 90.32 96.15 100.00 100.00 85.19 100.00 92.59 91.67 98.15 96.43 96.97 92.00 96.43 100.00 100.00 96.55 97.44 96.55 K alternative_donor CG7203,Rack1,RI_chr2L_7826337_7826533 chr2L - chr2L_7826982_7827063 chr2L_7826982_7827060 chr2L_7826913_7826981;chr2L_7827064_7827129 100.00 100.00 100.00 99.97 100.00 100.00 100.00 100.00 100.00 100.00 99.93 99.97 100.00 100.00 100.00 99.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.97 99.94 100.00 100.00 99.95 100.00 100.00 100.00 100.00 100.00 99.97 100.00 99.97 100.00 100.00 100.00 100.00 100.00 100.00 99.96 100.00 100.00 99.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.96 K mutually_exclusive I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499338_1499771,chr3L_1499880_1501798;chr3L_1499338_1501350,chr3L_1501398_1501798 chr3L_1499338_1500244,chr3L_1500389_1501798 chr3L_1499772_1499879;chr3L_1501351_1501397 chr3L_1500245_1500388 chr3L_1499043_1499337;chr3L_1501799_1501892 75.00 NA 75.00 70.00 NA NA NA 81.82 90.00 83.33 NA 76.92 NA NA 66.67 80.00 NA NA 75.00 77.78 NA 100.00 50.00 80.00 80.00 71.43 75.00 63.64 NA 50.00 81.82 NA 33.33 88.89 100.00 100.00 NA 60.00 28.57 44.44 66.67 81.82 NA 60.00 100.00 85.71 60.00 50.00 77.78 50.00 50.00 66.67 NA 100.00 71.43 50.00 75.00 80.00 K intron_retention Rbp1,Mcm5 chr3R + chr3R_6610646_6611124 chr3R_6610645_6610646;chr3R_6611124_6611125 chr3R_6610279_6610645;chr3R_6611125_6611347 0.00 0.00 0.00 5.13 NA NA 0.00 7.32 12.24 0.00 0.00 8.16 5.26 0.00 0.00 8.70 8.33 0.00 5.56 4.00 NA 0.00 6.67 0.00 0.00 NA 0.00 0.00 8.70 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 2.94 5.26 0.00 8.16 0.00 0.00 0.00 0.00 0.00 6.25 8.16 0.00 0.00 0.00 4.55 NA 0.00 0.00 0.00 2.56 K jcn_only_AA Mef2,I_chr2R_5806138_5806216,I_chr2R_5806354_5806933,CREFI_chr2R_5809509_5845628,I_chr2R_5814375_5816404,RI_chr2R_5846889_5846948 chr2R - chr2R_5806138_5806216 chr2R_5806147_5806216 chr2R_5806217_5806316;chr2R_5806038_5806137 100.00 NA NA 97.06 NA NA NA 100.00 96.88 100.00 NA 100.00 NA NA NA NA NA 100.00 NA 95.45 NA 100.00 100.00 100.00 NA NA NA NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 94.29 100.00 100.00 98.21 95.00 100.00 NA 100.00 100.00 100.00 NA 96.00 100.00 NA 100.00 NA 97.62 NA NA NA NA 98.08 K alternative_acceptor Trap1 chr2R - chr2R_2521435_2521515;chr2R_2521438_2521515 chr2R_2521454_2521515 chr2R_2521516_2521564;chr2R_2521152_2521434 100.00 100.00 100.00 100.00 96.43 96.43 100.00 98.21 98.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 96.77 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 97.14 97.78 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 96.97 97.06 100.00 97.78 100.00 100.00 100.00 98.11 100.00 100.00 100.00 97.06 100.00 100.00 100.00 K intron_retention phr6-4 chr2L - chr2L_20644601_20644663 chr2L_20644600_20644601;chr2L_20644663_20644664 chr2L_20643487_20644600;chr2L_20644664_20645361 7.11 NA 25.00 18.75 NA NA NA 11.11 0.00 NA NA 5.88 NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 8.33 NA NA NA NA NA 0.00 NA 3.45 23.08 NA NA NA NA 22.22 0.00 NA NA NA NA NA 0.00 NA 4.76 14.29 K intron_retention BM-40-SPARC,I_chr3R_22696095_22696231,I_chr3R_22696095_22696291,I_chr3R_22696095_22697413 chr3R - chr3R_22696095_22697413 chr3R_22696094_22696095;chr3R_22697413_22697414 chr3R_22695995_22696094;chr3R_22697414_22697513 53.33 38.46 62.50 56.86 29.41 59.09 57.45 55.56 50.88 NA 60.00 36.54 57.14 50.00 44.44 60.00 32.00 40.00 55.56 55.00 63.16 66.67 34.62 45.45 55.00 60.00 72.00 NA 45.45 50.00 65.00 36.36 NA 42.86 53.33 55.00 43.75 NA 43.75 69.23 55.56 44.44 57.14 46.15 63.64 64.71 36.84 70.00 61.22 36.84 42.86 33.33 50.00 42.11 59.26 32.00 45.83 64.29 K jcn_only_AD CG11248 chr3L + chr3L_21673333_21673399;chr3L_21673253_21673399 chr3L_21673324_21673399 chr3L_21673400_21675533;chr3L_21673237_21673252 30.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention exba,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1425890_1426209 chr3R_1425889_1425890;chr3R_1426209_1426210 chr3R_1425790_1425889;chr3R_1426210_1426225 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545615_17545855 chr2R_17545614_17545615;chr2R_17545855_17545856 chr2R_17545613_17545614;chr2R_17545856_17545985 21.95 NA 25.00 24.00 NA 0.00 30.77 29.41 26.32 NA 35.71 0.00 NA NA 20.00 20.00 25.00 10.53 NA 22.22 NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA 21.95 21.43 NA 26.67 NA NA NA 10.53 NA NA NA NA NA 9.09 NA NA NA K intron_retention CG18604,I_chr2R_14589693_14590032 chr2R + chr2R_14589693_14590032 chr2R_14589692_14589693;chr2R_14590032_14590033 chr2R_14589593_14589692;chr2R_14590033_14590132 37.30 NA NA NA NA NA NA NA 35.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA 38.89 NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Tango13,I_chrX_13480088_13480998,I_chrX_13483861_13483954 chrX + chrX_13480088_13483954 chrX_13480126_13483954 chrX_13483955_13484054;chrX_13479988_13480087 4.88 3.79 6.78 4.76 4.95 1.08 3.03 4.97 3.54 4.52 1.45 2.58 1.67 3.45 2.33 4.55 4.00 13.43 4.30 1.40 1.82 8.72 4.24 5.23 3.45 3.37 3.38 6.45 9.71 5.39 3.57 8.99 4.78 3.18 8.27 6.77 5.40 3.93 5.08 6.15 5.33 2.55 7.32 4.88 19.61 5.33 6.14 4.88 6.81 6.38 6.67 5.45 2.25 4.40 5.26 4.69 7.14 8.18 K intron_retention CG8232 chr2R + chr2R_4817886_4817938 chr2R_4817885_4817886;chr2R_4817938_4817939 chr2R_4817764_4817885;chr2R_4817939_4818038 0.00 0.00 3.03 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 NA 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG16817 chr3R + chr3R_5504699_5504764 chr3R_5504698_5504699;chr3R_5504764_5504765 chr3R_5504442_5504698;chr3R_5504765_5505383 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.30 0.60 0.00 0.00 0.32 0.00 0.66 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.93 0.00 1.17 2.92 0.00 0.00 0.42 0.00 0.00 0.32 0.66 0.59 0.85 0.27 0.25 0.00 0.00 0.26 0.00 0.00 0.19 0.35 0.54 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.21 0.44 0.29 0.10 K intron_retention Aprt chr3L - chr3L_1884249_1884322 chr3L_1884248_1884249;chr3L_1884322_1884323 chr3L_1883791_1884248;chr3L_1884323_1884560 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 K jcn_only_AD Vap-33-1 chrX + chrX_3843210_3843513;chrX_3843099_3843513;chrX_3843406_3843513;chrX_3843214_3843513 chrX_3843206_3843513 chrX_3843514_3843746;chrX_3843030_3843098 0.00 0.00 0.90 2.15 0.00 2.38 0.44 0.89 0.52 0.00 0.00 0.49 0.00 0.00 0.82 0.47 1.54 1.22 0.00 0.34 0.00 0.00 1.00 0.00 0.00 2.41 0.00 0.00 3.33 0.00 0.85 0.00 0.74 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.96 0.00 1.19 0.74 0.00 2.74 1.92 0.00 0.00 0.92 0.00 0.00 0.00 K alternative_donor exd chrX + chrX_15887147_15887504;chrX_15886884_15887504;chrX_15886821_15887504;chrX_15886888_15887504;chrX_15886827_15887504;chrX_15886958_15887504;chrX_15886802_15887504 chrX_15887006_15887504 chrX_15887505_15887806;chrX_15886739_15886801 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA K intron_retention CG8451 chr2L - chr2L_8202410_8202467 chr2L_8202409_8202410;chr2L_8202467_8202468 chr2L_8202358_8202409;chr2L_8202468_8202533 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention CG9776,CG9772 chr3R - chr3R_163065_163269 chr3R_163064_163065;chr3R_163269_163270 chr3R_162191_163064;chr3R_163270_163396 0.00 0.00 0.00 0.00 0.00 0.00 4.17 3.23 0.00 0.00 0.00 2.60 0.00 2.86 2.86 0.00 0.00 0.00 0.00 2.53 0.00 0.00 3.23 2.63 0.00 0.00 0.00 3.12 0.00 2.56 3.53 0.00 2.86 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 5.56 2.08 0.00 0.00 0.00 0.00 3.33 2.70 0.00 0.00 4.44 0.00 0.00 0.00 K intron_retention CG3744,I_chr3R_20701248_20701968 chr3R - chr3R_20701248_20701427 chr3R_20701247_20701248;chr3R_20701427_20701428 chr3R_20701148_20701247;chr3R_20701428_20701721 92.86 82.76 92.86 100.00 92.31 84.21 100.00 95.24 93.33 92.00 86.67 88.57 100.00 92.31 95.00 92.31 91.67 100.00 84.62 93.48 90.00 98.65 91.49 90.24 90.00 100.00 92.31 90.00 93.10 92.50 100.00 94.12 97.56 100.00 89.29 97.50 93.42 92.86 92.86 93.10 94.44 90.00 93.75 96.55 84.62 90.32 95.65 97.92 91.89 91.30 92.98 94.12 86.36 87.50 92.86 93.75 73.08 96.55 K alternative_acceptor CG31249 chr3R - chr3R_13512079_13512232 chr3R_13512084_13512232 chr3R_13512233_13512559;chr3R_13511411_13512078 100.00 100.00 100.00 94.12 90.00 90.00 100.00 94.12 100.00 NA 100.00 95.45 100.00 100.00 92.86 100.00 NA 100.00 77.78 100.00 100.00 93.75 100.00 100.00 NA 90.00 91.67 NA NA 87.50 NA 100.00 NA 92.31 NA NA 66.67 100.00 90.00 100.00 100.00 100.00 NA 90.91 91.67 100.00 91.67 NA 94.44 100.00 91.67 NA NA 100.00 100.00 90.00 100.00 87.50 N alternative_last_exon CG3091,I_chrX_2147635_2147990 chrX - chrX_2145388_2146756 chrX_2146699_2146756 chrX_2145046_2145387 chrX_2145705_2146698 chrX_2146757_2146893 98.00 97.06 95.83 97.06 95.45 95.83 96.88 98.21 100.00 100.00 100.00 97.50 94.12 97.06 97.14 97.56 96.67 100.00 96.55 98.39 95.00 81.08 100.00 96.77 92.31 93.75 100.00 90.00 100.00 96.15 97.83 100.00 100.00 97.92 94.74 94.74 93.94 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 98.00 95.24 100.00 100.00 100.00 96.15 97.06 100.00 100.00 100.00 K alternative_acceptor ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13413922_13414338;chr2R_13413823_13414338 chr2R_13413919_13414338 chr2R_13414339_13414406;chr2R_13412209_13413822 22.14 25.00 18.75 18.81 23.08 23.81 23.68 21.35 24.84 10.26 26.67 20.44 30.19 22.00 21.52 27.27 26.98 16.42 25.37 18.70 24.19 22.14 17.24 19.35 20.97 22.95 22.22 19.61 17.14 22.00 25.00 24.44 22.95 20.95 17.14 24.36 19.77 26.88 18.85 25.42 29.55 17.65 17.54 26.32 26.76 25.00 20.37 15.60 20.00 25.81 16.96 22.81 28.33 14.89 25.93 24.56 12.24 17.14 K intron_retention Surf6 chr3R - chr3R_15730291_15730344 chr3R_15730290_15730291;chr3R_15730344_15730345 chr3R_15729384_15730290;chr3R_15730345_15730501 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor vir-1,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,noncoding_2764,I_chr2L_12421830_12423260 chr2L - chr2L_12421862_12423322;chr2L_12421902_12423322 chr2L_12421830_12423322 chr2L_12423323_12423328;chr2L_12421816_12421829 96.70 96.92 95.44 94.05 91.84 95.48 94.67 92.57 95.72 99.43 94.19 97.83 95.78 96.70 92.43 97.21 94.76 94.98 93.79 97.21 89.71 98.82 98.30 98.35 93.06 93.37 96.75 94.50 97.88 97.66 98.01 96.54 91.78 93.92 97.47 95.98 98.43 97.62 97.81 94.24 94.81 93.79 93.96 98.24 95.61 98.17 98.77 97.80 96.30 98.47 98.22 98.79 98.24 98.57 95.36 98.62 98.98 97.30 K jcn_only_AA CG42360,RI_chr2R_20495045_20495115,RI_chr2R_20497443_20497538 chr2R + chr2R_20496560_20496621 chr2R_20496560_20496612 chr2R_20496458_20496559;chr2R_20496622_20496816 100.00 NA NA NA NA NA 100.00 95.45 96.55 NA NA 100.00 100.00 NA NA 100.00 NA NA 95.65 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 96.88 NA 95.24 NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA K jcn_only_AA CG1582,I_chrX_10792251_10792314 chrX - chrX_10792251_10792314 chrX_10792255_10792314 chrX_10792315_10792414;chrX_10792151_10792250 100.00 100.00 98.36 100.00 100.00 100.00 99.19 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 97.20 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 98.18 100.00 98.29 99.04 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 98.36 100.00 100.00 93.33 96.97 97.96 100.00 100.00 100.00 K alternative_donor CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_239517_240531;chr4_239517_240516 chr4_239517_239863 chr4_239079_239516;chr4_240532_240654 2.00 2.13 0.00 1.41 0.00 0.00 1.82 0.00 2.40 0.00 2.78 1.19 2.38 0.00 0.00 0.00 2.38 22.58 2.00 1.60 2.56 0.00 2.78 2.33 3.70 0.00 2.94 5.26 5.26 2.94 1.54 4.55 2.33 1.41 3.33 14.29 2.04 3.33 0.00 2.00 7.69 1.12 0.00 0.00 0.00 3.03 2.70 5.00 1.11 2.27 2.00 0.00 0.00 3.85 0.00 3.12 0.00 0.00 K intron_retention eIF2B-alpha chr3R - chr3R_25760474_25760532 chr3R_25760473_25760474;chr3R_25760532_25760533 chr3R_25760295_25760473;chr3R_25760533_25760803 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 5.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention noncoding_5243,l(2)44DEa,I_chr2R_4553577_4562151,I_chr2R_4553817_4565934,I_chr2R_4554300_4563976,I_chr2R_4565692_4565934 chr2R + chr2R_4566640_4567516 chr2R_4566639_4566640;chr2R_4567516_4567517 chr2R_4566433_4566639;chr2R_4567517_4567991 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Taf6 chr3L + chr3L_19594248_19594296 chr3L_19594247_19594248;chr3L_19594296_19594297 chr3L_19594013_19594247;chr3L_19594297_19594484 97.73 100.00 100.00 97.22 100.00 100.00 100.00 100.00 97.37 100.00 100.00 97.73 94.74 100.00 100.00 96.55 100.00 100.00 100.00 98.33 100.00 97.30 98.25 97.50 100.00 100.00 97.22 96.15 100.00 96.88 100.00 94.12 96.77 96.00 100.00 100.00 97.78 96.97 96.00 100.00 100.00 97.78 93.75 96.30 97.56 97.44 93.02 100.00 97.30 94.92 97.73 95.00 96.55 98.08 96.00 94.87 93.88 96.77 K intron_retention CG12090,I_chr3L_1525393_1526659,Ir62a chr3L - chr3L_1528077_1529105 chr3L_1528076_1528077;chr3L_1529105_1529106 chr3L_1528061_1528076;chr3L_1529106_1529206 31.58 33.33 21.43 22.73 26.09 30.77 42.42 32.26 40.48 33.33 35.00 51.43 73.33 40.00 18.52 42.86 26.32 22.22 42.86 20.69 35.29 61.11 23.26 24.00 41.67 43.75 31.58 NA 44.12 31.58 25.00 22.22 20.00 31.25 15.00 35.29 32.26 34.78 23.08 59.38 35.48 32.56 36.84 25.71 10.71 21.43 NA 20.27 26.32 46.15 33.33 35.29 19.05 13.33 50.00 28.57 13.33 14.55 K alternative_donor Fak56D,F_chr2R_15323055_15323097 chr2R - chr2R_15324149_15324362;chr2R_15324149_15324719 chr2R_15324149_15324555 chr2R_15324053_15324148;chr2R_15324720_15324721 41.67 41.67 40.00 40.91 30.00 23.08 37.04 26.32 43.59 NA 41.67 51.72 33.33 41.67 31.58 46.15 33.33 31.25 29.41 55.26 35.71 41.67 48.00 44.44 NA 31.25 54.17 36.36 NA 50.00 29.41 50.00 50.00 45.45 42.86 45.45 42.86 46.15 50.00 51.85 50.00 30.00 41.67 33.33 33.33 44.44 40.00 60.87 42.31 28.57 55.00 25.00 42.86 NA NA NA 50.00 50.00 K jcn_only_AA cryptocephal,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21318420_21318515 chr2L_21318420_21318484 chr2L_21318351_21318419;chr2L_21318516_21318548 100.00 100.00 99.91 99.96 100.00 100.00 100.00 100.00 99.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.78 100.00 99.85 100.00 100.00 100.00 99.91 100.00 100.00 100.00 99.93 100.00 100.00 99.94 100.00 100.00 99.90 100.00 100.00 100.00 100.00 99.90 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.89 99.91 100.00 100.00 100.00 99.92 100.00 99.89 100.00 K alternative_donor SdhA,I_chr2R_15283283_15283411,I_chr2R_15283319_15283369 chr2R - chr2R_15283283_15283415 chr2R_15283283_15283369 chr2R_15283219_15283282;chr2R_15283416_15283469 40.17 40.91 51.85 58.14 41.18 52.94 45.95 50.00 31.11 12.50 41.67 40.35 50.00 50.00 45.45 32.61 45.45 50.00 50.00 32.20 44.44 21.05 14.29 13.33 15.00 43.75 35.00 37.50 22.22 40.00 47.83 24.00 47.37 40.00 36.36 23.53 33.93 20.59 46.51 61.29 NA 33.33 50.00 45.71 36.36 41.18 39.13 41.18 37.70 28.57 33.33 29.17 36.84 42.86 41.67 38.89 31.25 43.75 K intron_retention CG2943 chr3R - chr3R_3732783_3732849 chr3R_3732782_3732783;chr3R_3732849_3732850 chr3R_3732140_3732782;chr3R_3732850_3733074 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 2.05 0.00 0.00 0.00 0.00 0.51 1.55 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD lt,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22832742_22832804 chr2L_22832746_22832804 chr2L_22832805_22832867;chr2L_22832624_22832741 90.00 90.77 90.12 94.90 90.00 91.67 82.20 92.59 90.45 83.33 94.34 84.54 97.67 90.24 81.82 92.16 95.65 90.41 94.55 96.38 90.00 89.66 85.14 89.06 86.36 83.33 87.93 NA 67.50 85.71 90.84 88.00 86.89 94.01 96.77 100.00 96.30 86.79 83.05 90.22 81.08 92.09 89.74 95.52 89.41 84.21 95.24 90.00 91.33 87.30 89.77 88.89 84.44 84.78 93.07 86.17 90.68 90.09 K alternative_last_exon Jupiter,I_chr3R_7417030_7419354,I_chr3R_7417630_7417716,RI_chr3R_7442793_7445425 chr3R - chr3R_7417030_7418088 chr3R_7417735_7418088 chr3R_7414790_7417029 chr3R_7417666_7417734 chr3R_7418089_7418346 0.00 0.00 0.00 0.26 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.25 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.31 0.27 0.00 0.91 0.38 0.00 0.00 0.26 0.30 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention xmas-1,xmas-2 chrX - chrX_17048134_17049045 chrX_17048133_17048134;chrX_17049045_17049046 chrX_17048122_17048133;chrX_17049046_17051545 67.34 NA 84.62 85.00 75.00 73.33 78.95 90.00 74.19 14.29 87.50 68.18 69.23 90.00 72.73 61.11 63.64 90.00 76.92 93.75 46.15 58.82 42.86 53.85 41.67 92.86 58.33 NA 46.15 53.33 58.33 73.33 51.85 80.00 35.71 33.33 38.46 NA 42.86 73.08 87.50 66.67 100.00 60.00 69.23 61.54 NA 65.22 90.91 57.14 45.45 NA NA NA 92.86 30.77 50.00 68.00 K jcn_only_AA betaggt-I,I_chr2L_4946222_4946668 chr2L + chr2L_4946222_4946906 chr2L_4946222_4946668 chr2L_4946122_4946221;chr2L_4946907_4947734 1.67 1.35 0.00 2.70 2.50 0.00 4.17 8.33 1.77 0.00 0.00 10.87 NA NA 0.00 4.35 4.76 11.54 0.00 1.72 0.00 13.51 0.86 1.92 0.00 3.57 0.00 0.00 15.49 0.00 5.56 0.00 4.71 3.57 0.00 0.00 1.90 1.83 0.00 4.40 0.00 0.00 0.00 0.00 7.06 7.81 0.00 10.61 1.20 1.25 1.11 1.54 1.67 2.82 9.09 6.76 1.12 10.81 K intron_retention I_chr2L_4970785_4973718,RI_chr2L_4971343_4973718,Gmd,CG8891,CG8892 chr2L - chr2L_4976160_4976219 chr2L_4976159_4976160;chr2L_4976219_4976220 chr2L_4975251_4976159;chr2L_4976220_4976655 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 7.41 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3313 chr3R - chr3R_7842205_7842273 chr3R_7842204_7842205;chr3R_7842273_7842274 chr3R_7841650_7842204;chr3R_7842274_7842602 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 4.35 0.00 NA NA 0.00 7.69 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA 0.00 K alternative_donor l(3)82Fd,I_chr3R_1125296_1161435,I_chr3R_1125296_1175189,I_chr3R_1129905_1148709,I_chr3R_1129905_1160126,I_chr3R_1131576_1133656,I_chr3R_1131693_1133665,I_chr3R_1147660_1148709 chr3R - chr3R_1131576_1133665 chr3R_1131576_1133656 chr3R_1131476_1131575;chr3R_1133666_1133756 5.56 NA NA NA NA NA NA 8.33 5.56 NA NA 5.26 NA NA 0.00 9.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.56 NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA K alternative_acceptor lig,I_chr2R_3960977_3961116,I_chr2R_3960977_3961119,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3960977_3961119 chr2R_3960977_3961116 chr2R_3960877_3960976;chr2R_3961120_3961205 97.44 94.59 100.00 97.06 100.00 100.00 95.00 96.55 98.04 96.15 100.00 95.24 100.00 100.00 85.00 94.44 100.00 100.00 100.00 100.00 90.91 97.37 98.44 96.55 97.22 100.00 97.62 93.94 100.00 96.43 95.24 95.00 96.15 100.00 96.67 80.56 96.91 98.18 97.14 96.43 100.00 97.67 92.31 100.00 95.65 96.30 97.44 100.00 100.00 96.67 98.00 95.00 100.00 97.14 100.00 100.00 100.00 100.00 K intron_retention Sug,noncoding_12057 chr3L + chr3L_11677746_11679169 chr3L_11677745_11677746;chr3L_11679169_11679170 chr3L_11677723_11677745;chr3L_11679170_11679308 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 5.88 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.76 7.69 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.85 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 NA 0.00 1.96 NA 3.45 0.00 NA NA 0.00 0.00 NA 0.00 K alternative_acceptor CG9044 chr2L + chr2L_5949612_5949834 chr2L_5949612_5949827 chr2L_5949486_5949611;chr2L_5949835_5949990 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA 100.00 NA 100.00 NA 100.00 92.86 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 90.00 NA 100.00 NA NA NA 87.50 100.00 NA 100.00 NA NA NA NA NA NA NA K intron_retention CG5245,Pros25 chr3R + chr3R_8257724_8257788 chr3R_8257723_8257724;chr3R_8257788_8257789 chr3R_8257468_8257723;chr3R_8257789_8257944 0.00 0.00 0.00 0.00 0.00 0.70 0.27 0.52 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.84 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.31 0.00 0.00 0.00 1.37 0.00 0.36 0.00 0.30 0.00 0.00 0.00 0.37 0.00 0.27 0.21 0.29 0.16 0.40 0.00 0.16 0.40 0.37 0.00 0.00 0.26 0.21 0.46 0.00 0.24 0.00 0.00 0.00 0.41 K alternative_acceptor Hr78,I_chr3L_21490089_21490390,CG33214 chr3L - chr3L_21490089_21490390;chr3L_21489978_21490390;chr3L_21490023_21490390 chr3L_21490008_21490390 chr3L_21490391_21490490;chr3L_21489920_21489977 58.33 NA NA 45.00 NA 57.14 81.82 62.50 50.00 NA 66.67 53.85 72.73 54.55 42.86 60.00 NA 85.71 60.00 45.45 NA NA 70.00 50.00 NA 42.86 NA NA NA NA NA NA 37.50 58.33 NA NA NA NA NA 83.33 NA 66.67 60.00 66.67 NA NA NA NA 69.23 NA 58.33 50.00 NA NA 53.85 NA NA NA K jcn_only_AD CG18624,RI_chrX_7787450_7787620,RI_chrX_7787450_7787687,RI_chrX_7787524_7787687 chrX - chrX_7787450_7787782 chrX_7787450_7787620 chrX_7787424_7787449;chrX_7787783_7787787 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD bur,I_chr2L_21177679_21177901,I_chr2L_21177679_21178250,I_chr2L_21177960_21179329 chr2L - chr2L_21177679_21179329 chr2L_21177679_21177901 chr2L_21177579_21177678;chr2L_21179330_21179429 0.59 0.00 0.78 1.54 0.00 0.00 0.56 1.24 0.00 1.67 0.00 1.14 3.23 0.96 0.74 0.59 3.23 0.77 0.00 4.52 0.00 11.83 0.00 0.73 0.93 0.00 0.00 0.00 1.25 1.01 0.83 0.00 0.53 0.53 0.00 1.01 0.94 0.00 0.00 1.72 0.00 0.49 0.99 0.00 0.00 0.00 0.00 0.60 1.38 5.00 0.61 1.83 0.00 1.89 0.74 0.00 0.00 0.00 K alternative_acceptor ras chrX + chrX_10638695_10638862 chrX_10638695_10638811 chrX_10638539_10638694;chrX_10638863_10638943 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 K alternative_donor CG9795,I_chr3R_151216_151418 chr3R + chr3R_151184_151418;chr3R_151180_151418;chr3R_151212_151418 chr3R_151216_151418 chr3R_151419_151518;chr3R_151116_151179 6.67 9.09 8.33 9.52 0.00 10.00 11.11 6.25 7.41 0.00 20.00 11.76 0.00 8.33 7.69 5.56 9.09 0.00 0.00 5.00 0.00 0.00 0.00 5.56 14.29 0.00 0.00 0.00 14.29 0.00 6.67 0.00 12.50 6.67 9.09 8.33 0.00 0.00 6.67 8.33 0.00 7.41 0.00 7.14 10.00 8.33 0.00 11.11 11.11 6.45 0.00 8.33 8.33 0.00 8.33 7.69 6.67 0.00 K alternative_acceptor RI_chr3R_1559339_1559407,CG1239 chr3R + chr3R_1559339_1559428 chr3R_1559339_1559408 chr3R_1559248_1559338;chr3R_1559429_1559501 87.50 NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor Pdp1,RI_chr3L_7809841_7810536,I_chr3L_7813130_7818683,I_chr3L_7831960_7846282 chr3L - chr3L_7809712_7810536;chr3L_7809841_7810536 chr3L_7809826_7810536 chr3L_7810537_7810636;chr3L_7809584_7809711 88.64 88.89 93.02 87.50 88.37 82.61 87.23 88.89 91.38 91.30 77.27 85.19 96.15 87.18 93.75 89.74 95.83 84.62 95.12 90.00 90.00 89.33 86.08 88.06 91.30 86.11 79.17 92.31 87.50 87.27 93.88 84.62 80.00 89.19 80.43 91.49 89.29 88.33 90.67 84.00 93.33 91.74 88.64 91.43 84.62 90.24 80.85 91.67 88.24 94.64 89.47 87.50 70.73 83.72 91.38 84.78 82.69 84.62 K intron_retention Pp2A-29B,I_chr2L_8366082_8366148,I_chr2L_8367210_8367311,I_chr2L_8369561_8369715 chr2L + chr2L_8366082_8366148 chr2L_8366081_8366082;chr2L_8366148_8366149 chr2L_8366075_8366081;chr2L_8366149_8366248 99.31 100.00 99.21 100.00 100.00 98.85 98.47 99.57 99.42 100.00 100.00 98.60 99.31 99.22 100.00 100.00 99.22 98.96 99.37 98.90 99.10 98.59 100.00 100.00 98.55 100.00 100.00 97.30 100.00 100.00 98.84 100.00 99.13 100.00 98.46 98.77 98.67 100.00 100.00 96.83 98.63 98.71 99.11 99.07 100.00 99.04 98.70 98.10 99.58 98.80 100.00 100.00 100.00 100.00 99.41 100.00 98.81 99.01 K intron_retention janA,RI_chr3R_25864678_25864966,I_chr3R_25864692_25864783,I_chr3R_25871509_25871807 chr3R - chr3R_25864909_25864966 chr3R_25864908_25864909;chr3R_25864966_25864967 chr3R_25864784_25864908;chr3R_25864967_25865066 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.00 1.55 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.61 0.39 0.44 0.36 K intron_retention CG6621 chr3R - chr3R_6718297_6718361 chr3R_6718296_6718297;chr3R_6718361_6718362 chr3R_6718085_6718296;chr3R_6718362_6718573 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 3.85 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 6.67 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA NA NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA K intron_retention DCAP,I_chr2R_6182829_6183013,RI_chr2R_6183083_6183246,RI_chr2R_6183553_6192101,I_chr2R_6188094_6192101 chr2R + chr2R_6182829_6183246 chr2R_6182828_6182829;chr2R_6183246_6183247 chr2R_6182796_6182828;chr2R_6183247_6183299 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 K alternative_donor CG5899,I_chr2L_9911150_9911296 chr2L - chr2L_9911150_9911296 chr2L_9911150_9911208 chr2L_9911050_9911149;chr2L_9911297_9911396 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 98.46 100.00 95.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 92.86 100.00 96.30 100.00 100.00 96.15 97.78 100.00 100.00 100.00 97.56 100.00 100.00 100.00 N alternative_acceptor ras chrX + chrX_10640260_10640453 chrX_10640260_10640321 chrX_10640109_10640259;chrX_10640454_10641105 2.33 1.72 5.88 2.94 2.78 1.35 3.49 2.50 2.27 3.37 0.00 1.22 0.00 2.17 2.35 2.56 0.00 1.82 2.33 2.70 1.69 21.15 2.51 4.44 1.92 4.26 3.31 3.36 1.83 1.65 2.99 2.08 2.11 1.98 2.27 1.89 1.85 2.82 2.76 5.48 1.64 2.40 4.17 1.51 4.35 2.97 3.36 3.08 1.83 1.36 1.95 3.45 1.39 3.12 1.32 2.59 1.88 1.72 K alternative_donor skpA chrX + chrX_550433_551131;chrX_550818_551131;chrX_550638_551131;chrX_550774_551131;chrX_550523_551131;chrX_550654_551131 chrX_550498_551131 chrX_551132_551937;chrX_550426_550432 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD Hcf,I_chr4_391984_392875 chr4 + chr4_380985_381212;chr4_380602_381212;chr4_380646_381212;chr4_380607_381212 chr4_380911_381212 chr4_381213_381632;chr4_380600_380601 51.16 NA NA 50.00 NA NA 70.37 100.00 60.78 NA NA 50.00 NA 45.45 NA 46.94 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.61 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 51.16 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG17471,RI_chr4_1213397_1214333,RI_chr4_1213397_1216053,RI_chr4_1214248_1214333,I_chr4_1214293_1214333,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1214248_1214333;chr4_1214293_1214333 chr4_1214281_1214333 chr4_1214334_1214402;chr4_1214193_1214247 98.81 94.92 100.00 97.62 100.00 98.21 99.03 99.12 96.49 NA 100.00 96.97 98.31 98.25 100.00 97.75 98.75 98.57 96.15 97.64 100.00 100.00 98.31 100.00 100.00 100.00 97.22 NA 100.00 100.00 100.00 100.00 94.83 98.17 100.00 90.48 100.00 97.37 100.00 100.00 95.45 98.28 100.00 100.00 100.00 98.81 95.52 98.77 98.33 100.00 100.00 100.00 100.00 97.73 100.00 97.59 98.46 98.04 K multi_cassette Ten-m,EI_chr3L_22298865_22299141,I_chr3L_22300015_22300646,I_chr3L_22374182_22399991 chr3L - chr3L_22296709_22300646 chr3L_22296709_22296798;chr3L_22297211_22297345;chr3L_22297630_22300646 chr3L_22296799_22297210;chr3L_22297346_22297629 chr3L_22296163_22296708;chr3L_22300647_22300652 95.24 91.67 90.91 68.18 100.00 100.00 92.31 87.50 87.88 100.00 100.00 96.43 83.33 91.67 100.00 91.67 90.91 100.00 100.00 89.29 88.89 100.00 96.55 86.67 100.00 100.00 80.95 100.00 87.50 95.24 90.00 100.00 94.12 90.48 100.00 94.44 89.47 85.71 95.24 100.00 100.00 86.67 100.00 93.75 100.00 80.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 94.44 100.00 100.00 80.00 K intron_retention Tango1,I_chr2L_6652699_6652752 chr2L + chr2L_6653537_6653594 chr2L_6653536_6653537;chr2L_6653594_6653595 chr2L_6653435_6653536;chr2L_6653595_6653841 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.77 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CHKov2 chr3R - chr3R_21155606_21155671 chr3R_21155605_21155606;chr3R_21155671_21155672 chr3R_21155276_21155605;chr3R_21155672_21155863 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 5.56 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 2.70 7.14 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Aats-his,noncoding_24608,EI_chrX_18409716_18414750 chrX + chrX_18411773_18411843 chrX_18411772_18411773;chrX_18411843_18411844 chrX_18411626_18411772;chrX_18411844_18412059 0.00 4.76 8.33 0.00 NA NA 5.00 6.25 8.82 0.00 NA 16.67 NA NA NA NA NA 0.00 NA 8.33 0.00 13.33 4.17 0.00 NA 0.00 0.00 14.29 11.76 0.00 NA 0.00 0.00 6.67 NA 0.00 0.00 3.45 0.00 5.13 0.00 8.00 NA 0.00 0.00 2.44 0.00 0.00 4.76 4.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 6.67 N cassette Slip1,RI_chr4_684967_689045,I_chr4_685717_686576,RI_chr4_685717_689045,RI_chr4_687548_689045 chr4 + chr4_685932_686576 chr4_685932_686085;chr4_686263_686576 chr4_686086_686262 chr4_685883_685931;chr4_686577_686676 0.00 0.00 0.00 1.43 0.00 0.00 0.00 1.22 1.98 0.00 0.00 1.45 46.43 0.00 0.00 1.22 0.00 3.45 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1308,CG1295 chr3L + chr3L_4195716_4195840 chr3L_4195715_4195716;chr3L_4195840_4195841 chr3L_4195666_4195715;chr3L_4195841_4195990 7.69 0.00 13.33 13.79 NA NA 20.00 0.00 0.00 NA NA 0.00 NA NA 0.00 14.29 NA NA NA 4.76 NA 36.36 15.38 NA NA NA 26.67 NA 20.00 5.56 15.38 NA 62.96 0.00 NA NA 0.00 NA 0.00 0.00 NA 7.69 NA NA NA NA NA 22.73 10.53 NA 0.00 NA NA NA NA NA NA NA K intron_retention CG30492,I_chr2R_3511157_3513995,C_chr2R_3522706_3523025,RI_chr2R_3536203_3536977,I_chr2R_3543397_3543455 chr2R + chr2R_3510799_3513995 chr2R_3510798_3510799;chr2R_3513995_3513996 chr2R_3510768_3510798;chr2R_3513996_3514095 37.72 NA 31.25 18.52 30.77 33.33 26.32 23.68 45.95 NA 40.00 37.93 61.11 41.18 38.89 29.17 46.15 40.00 30.00 40.48 NA 78.57 53.85 58.33 NA 26.09 NA NA NA NA 13.79 NA NA 26.09 NA NA NA NA 52.63 40.00 NA 33.33 22.22 62.50 60.00 NA NA NA 21.28 NA 37.50 NA NA NA 17.86 NA NA NA K intron_retention mus205 chr2R + chr2R_3683678_3683735 chr2R_3683677_3683678;chr2R_3683735_3683736 chr2R_3683591_3683677;chr2R_3683736_3686423 21.74 NA NA NA NA NA 24.14 9.09 0.00 NA NA 0.00 NA NA NA 9.09 NA 0.00 NA 15.00 NA 26.67 30.00 20.00 28.57 NA 38.46 12.50 57.89 NA 22.73 NA 26.09 21.74 NA 21.43 NA NA NA 24.00 40.00 29.41 NA 11.76 NA NA NA 21.74 NA NA 19.05 NA NA NA NA NA NA NA K intron_retention CG13868 chr2R - chr2R_16197689_16197754 chr2R_16197688_16197689;chr2R_16197754_16197755 chr2R_16197318_16197688;chr2R_16197755_16198752 0.76 1.13 0.31 1.16 0.00 0.00 0.20 0.55 0.87 1.20 0.36 0.99 1.12 0.81 0.99 1.47 0.55 0.61 1.00 0.66 0.45 1.32 0.78 1.20 0.99 0.76 3.05 4.95 1.60 0.69 0.25 0.38 0.97 0.47 0.67 1.22 0.59 0.63 0.85 0.91 1.35 0.70 0.00 0.00 0.49 0.55 0.75 0.44 0.23 0.90 1.28 0.99 0.42 0.35 0.69 1.38 0.92 0.89 K multi_cassette spz chr3R - chr3R_22892607_22894865 chr3R_22892607_22892843;chr3R_22892922_22893079;chr3R_22893218_22894865 chr3R_22892844_22892921;chr3R_22893080_22893217 chr3R_22892566_22892606;chr3R_22894866_22895053 42.86 41.10 73.08 35.48 43.40 39.62 22.22 55.71 43.57 31.91 54.35 29.71 63.64 56.00 37.04 65.00 60.00 60.47 42.03 64.77 43.75 34.04 42.65 49.15 46.81 38.18 61.36 36.36 17.46 41.67 50.00 42.62 35.53 50.60 49.09 25.93 37.31 40.00 42.86 40.46 49.32 40.74 47.37 26.32 22.68 37.25 50.00 36.28 45.97 62.50 60.71 38.46 23.21 54.55 48.65 43.10 43.42 38.89 K intron_retention CG8451 chr2L - chr2L_8201709_8201761 chr2L_8201708_8201709;chr2L_8201761_8201762 chr2L_8201017_8201708;chr2L_8201762_8202175 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9346 chr2R + chr2R_16902633_16902692 chr2R_16902632_16902633;chr2R_16902692_16902693 chr2R_16902271_16902632;chr2R_16902693_16903149 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 NA 0.00 6.52 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 4.44 2.94 0.00 0.00 0.00 12.00 3.23 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 3.70 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 K alternative_donor gus,I_chr2R_1009158_1009345,RI_chr2R_1009158_1011540,I_chr2R_1009346_1015730 chr2R - chr2R_1009158_1015801;chr2R_1009158_1015651 chr2R_1009158_1015735 chr2R_1009058_1009157;chr2R_1015802_1015818 80.00 NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG30005,I_chr2R_5495525_5495581 chr2R + chr2R_5495523_5495581 chr2R_5495525_5495581 chr2R_5495582_5495681;chr2R_5495425_5495522 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 2.22 0.00 0.00 1.33 0.00 0.00 2.33 0.00 0.00 2.70 0.00 0.00 0.00 6.25 3.17 0.00 0.00 0.00 0.00 3.70 3.51 0.00 0.00 0.00 0.00 0.00 2.78 0.00 NA 0.97 0.00 0.00 0.00 2.08 0.00 0.00 3.33 1.85 0.00 K intron_retention RhoGDI chr3L + chr3L_19921911_19923914 chr3L_19921910_19921911;chr3L_19923914_19923915 chr3L_19921899_19921910;chr3L_19923915_19924114 71.90 69.57 69.23 90.91 57.89 80.95 90.20 93.65 78.38 NA 69.23 76.32 65.00 87.10 64.71 75.00 71.79 75.00 78.05 51.43 68.42 NA NA 80.00 58.33 72.00 87.50 NA NA NA 54.55 NA 14.29 73.77 NA NA 50.00 NA NA 39.13 NA 75.71 76.00 NA NA NA NA NA 76.92 50.00 66.67 68.75 NA NA 70.97 NA 73.68 NA K intron_retention CG6845,I_chr3L_148414_148465,I_chr3L_148414_148475,I_chr3L_148414_148489 chr3L + chr3L_147083_147137 chr3L_147082_147083;chr3L_147137_147138 chr3L_146772_147082;chr3L_147138_147398 88.33 84.00 100.00 97.73 95.83 88.89 87.30 92.31 95.12 66.67 96.15 93.55 89.74 88.10 92.50 92.31 87.10 90.62 92.50 93.44 95.45 86.67 79.31 75.00 85.00 91.67 96.77 66.67 72.97 81.82 55.36 95.00 86.21 95.00 82.61 75.00 82.76 95.83 81.82 89.06 85.71 88.33 96.30 75.00 87.50 94.12 86.67 91.30 87.93 86.67 86.84 84.62 100.00 78.95 97.92 95.24 84.21 90.00 K intron_retention CG6643,I_chr3R_20370792_20375406 chr3R + chr3R_20375487_20377050 chr3R_20375486_20375487;chr3R_20377050_20377051 chr3R_20375407_20375486;chr3R_20377051_20377534 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.96 0.69 0.00 0.00 0.45 0.00 0.00 0.00 0.89 1.11 0.00 0.00 0.00 0.00 2.46 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 1.41 1.01 0.00 1.43 2.04 0.00 0.00 1.72 0.00 0.59 1.28 0.00 0.00 0.00 0.00 1.49 1.77 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Madm chr3R + chr3R_1569838_1570689 chr3R_1569837_1569838;chr3R_1570689_1570690 chr3R_1568207_1569837;chr3R_1570690_1571791 0.00 0.00 0.00 0.00 4.08 0.00 0.00 2.15 0.00 0.00 0.00 0.00 2.38 0.00 1.33 1.27 0.00 0.00 3.17 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.75 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 K cassette CG4662,I_chr3R_15676853_15676928 chr3R + chr3R_15676675_15677553 chr3R_15676675_15676786;chr3R_15676853_15677553 chr3R_15676787_15676852 chr3R_15676662_15676674;chr3R_15677554_15677640 96.97 94.12 100.00 100.00 100.00 91.67 95.24 100.00 97.22 90.00 100.00 100.00 100.00 94.74 89.47 96.15 94.74 100.00 100.00 100.00 93.33 95.24 95.45 93.75 90.00 100.00 94.74 100.00 92.31 93.33 95.24 91.67 95.24 96.97 100.00 92.86 100.00 100.00 100.00 95.83 100.00 96.97 93.33 100.00 100.00 100.00 100.00 100.00 100.00 95.65 95.83 100.00 94.74 100.00 100.00 100.00 96.00 96.15 K jcn_only_AA hppy,I_chr2R_15066378_15066915,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15066378_15066915;chr2R_15066378_15067003 chr2R_15066378_15066881 chr2R_15066360_15066377;chr2R_15067004_15067015 26.09 38.46 NA NA NA NA 37.50 50.00 28.57 NA NA 25.93 NA NA NA 9.09 NA NA 8.70 15.00 NA 14.04 27.03 43.48 31.82 NA 54.84 9.09 3.57 30.77 NA NA NA 46.43 NA 27.27 27.27 13.04 NA 16.98 NA 26.09 NA 14.47 NA NA 18.18 0.00 12.50 NA 31.82 34.62 NA NA 26.09 NA NA NA K intron_retention tomosyn,I_chrX_12531219_12531470,I_chrX_12534873_12541731,I_chrX_12548772_12549203 chrX + chrX_12546897_12546979 chrX_12546896_12546897;chrX_12546979_12546980 chrX_12546772_12546896;chrX_12546980_12547349 5.88 0.00 18.18 7.50 0.00 0.00 7.14 8.82 6.90 0.00 0.00 3.85 0.00 0.00 0.00 11.11 0.00 8.70 0.00 13.79 0.00 7.41 0.00 3.92 0.00 5.71 2.38 0.00 6.90 3.12 6.67 0.00 12.90 8.11 NA 7.41 0.00 0.00 8.51 1.27 6.06 9.26 14.29 2.04 0.00 9.30 5.00 13.33 10.00 6.98 2.17 13.04 7.14 12.50 6.25 2.50 7.58 7.81 K intron_retention Su(var)3-3 chr3L + chr3L_20219807_20219872 chr3L_20219806_20219807;chr3L_20219872_20219873 chr3L_20219516_20219806;chr3L_20219873_20220617 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 92.86 NA NA 88.89 100.00 100.00 NA 100.00 100.00 NA NA 90.00 NA NA NA NA NA NA NA 90.91 NA NA 92.86 100.00 NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K jcn_only_AA HmgD,I_chr2R_17601672_17603325,I_chr2R_17603119_17603196 chr2R + chr2R_17603123_17603250 chr2R_17603123_17603196 chr2R_17602911_17603122;chr2R_17603251_17603296 100.00 100.00 100.00 99.84 100.00 100.00 100.00 100.00 100.00 99.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.85 100.00 99.86 99.80 99.87 99.81 100.00 100.00 100.00 100.00 99.84 100.00 99.91 100.00 100.00 99.89 99.87 100.00 100.00 99.79 100.00 100.00 100.00 100.00 100.00 100.00 99.88 100.00 100.00 K alternative_acceptor Mitf,REI_chr4_1223922_1223965,I_chr4_1225890_1225947 chr4 + chr4_1223922_1223985;chr4_1223922_1223965 chr4_1223922_1224042 chr4_1223822_1223921;chr4_1224043_1224065 13.39 16.67 11.11 8.33 26.67 27.78 9.09 8.33 14.63 0.00 21.43 11.11 5.56 6.67 23.53 12.12 10.00 20.00 3.85 14.29 15.38 12.50 35.71 11.11 14.29 8.33 38.10 NA 14.29 NA 22.73 11.11 18.18 20.51 14.29 0.00 NA NA 37.50 7.69 11.11 12.50 7.14 9.09 NA 10.00 20.00 8.33 10.00 25.00 20.00 11.11 NA NA 16.00 16.67 16.67 23.08 K alternative_acceptor Ank,RI_chr4_144049_144406,I_chr4_144066_144410,I_chr4_150069_150423 chr4 - chr4_144049_144410 chr4_144066_144410 chr4_144411_144506;chr4_143966_144048 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.39 0.36 0.00 0.00 0.43 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.86 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.38 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 NA 0.00 0.00 0.00 0.00 NA 1.30 0.00 0.00 NA 0.53 4.76 0.00 0.00 K jcn_only_AD slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,RI_chr2R_20289332_20289739,I_chr2R_20289332_20289846,I_chr2R_20289332_20290093 chr2R - chr2R_20289332_20290083;chr2R_20289332_20290093;chr2R_20289332_20289846 chr2R_20289332_20289739 chr2R_20289232_20289331;chr2R_20290094_20290193 4.88 NA NA 19.44 NA 0.00 4.88 4.88 7.35 NA NA 3.57 10.00 2.63 3.33 6.25 5.26 8.33 12.20 6.38 4.17 6.45 6.25 7.14 NA 2.94 0.00 0.00 NA 5.56 4.65 NA 13.04 8.00 0.00 0.00 4.55 NA NA 6.12 NA 10.42 0.00 4.76 NA 9.68 0.00 6.12 3.64 NA 2.56 0.00 9.09 NA 9.38 NA NA 3.23 K intron_retention Sry-beta chr3R + chr3R_25865608_25865660 chr3R_25865607_25865608;chr3R_25865660_25865661 chr3R_25865454_25865607;chr3R_25865661_25868748 0.00 0.00 0.00 5.00 7.69 0.00 0.00 0.00 6.98 NA NA 5.26 0.00 0.00 0.00 0.00 NA 0.00 4.35 5.13 NA 4.35 0.00 0.00 0.00 7.41 0.00 0.00 22.22 0.00 0.00 NA 0.00 3.57 0.00 12.50 0.00 0.00 0.00 6.82 0.00 4.65 0.00 0.00 0.00 4.55 0.00 3.85 2.27 0.00 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1666133_1670281 chr2R_1666132_1666133;chr2R_1670281_1670282 chr2R_1666119_1666132;chr2R_1670282_1670304 96.67 97.44 98.08 93.68 96.43 96.88 95.83 96.52 94.17 100.00 93.75 97.56 94.12 95.65 92.31 96.43 92.31 97.67 98.39 97.44 98.00 97.92 97.56 100.00 100.00 97.14 97.67 88.89 94.87 91.07 98.31 96.88 98.80 97.14 95.45 100.00 94.74 94.74 97.50 96.72 100.00 100.00 100.00 97.44 90.91 96.67 92.00 92.47 96.15 95.83 97.30 92.59 96.15 95.65 95.71 96.67 93.75 93.40 K alternative_acceptor CdGAPr chr2L - chr2L_19777015_19777081 chr2L_19777021_19777081 chr2L_19777082_19778946;chr2L_19776320_19777014 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 94.12 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2446102_2459590 chr3L_2446101_2446102;chr3L_2459590_2459591 chr3L_2446087_2446101;chr3L_2459591_2459690 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Thor,I_chr2L_3479106_3479184 chr2L + chr2L_3478761_3479184 chr2L_3479106_3479184 chr2L_3479185_3479284;chr2L_3478359_3478760 2.18 1.29 2.15 3.55 1.93 1.96 4.85 4.42 2.77 1.22 2.07 3.51 3.82 3.61 2.63 5.32 2.66 1.71 2.61 1.93 1.42 1.87 1.56 1.82 1.70 1.38 3.01 9.14 4.21 1.39 2.24 1.13 1.32 3.15 3.53 4.01 1.90 0.53 1.67 2.11 1.67 3.00 2.07 0.75 1.54 3.26 3.13 2.18 3.45 2.53 3.41 2.13 2.48 3.08 1.78 3.29 2.55 1.78 K intron_retention Prat chr3R - chr3R_3737339_3737415 chr3R_3737338_3737339;chr3R_3737415_3737416 chr3R_3735310_3737338;chr3R_3737416_3737540 0.00 2.94 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.60 0.00 0.00 2.90 3.12 0.00 0.00 15.91 36.84 8.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.06 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 K intron_retention Tis11,RE_chrX_12554895_12571767 chrX + chrX_12554901_12571769 chrX_12554900_12554901;chrX_12571769_12571770 chrX_12554838_12554900;chrX_12571770_12571867 1.91 2.15 0.00 1.06 2.30 0.00 0.59 1.49 1.43 3.51 3.03 1.90 4.24 1.98 2.31 1.91 0.00 2.50 2.36 1.95 1.22 3.47 0.61 2.80 1.83 1.98 1.46 0.00 0.00 0.00 1.68 5.26 0.00 2.14 2.02 4.46 0.72 1.80 1.16 1.64 0.00 2.13 0.00 2.20 6.67 3.51 0.00 2.35 3.02 0.00 1.97 0.00 2.56 2.50 0.00 0.00 5.26 4.65 K intron_retention CG10089 chr3L - chr3L_13462170_13462235 chr3L_13462169_13462170;chr3L_13462235_13462236 chr3L_13462053_13462169;chr3L_13462236_13462312 0.00 NA 0.00 0.00 NA 0.00 25.00 9.68 6.90 0.00 14.29 0.00 11.11 0.00 0.00 5.88 0.00 0.00 0.00 0.00 4.35 0.00 0.00 5.56 NA 4.17 28.57 NA 17.65 NA 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 0.00 NA 2.78 NA 0.00 0.00 NA 0.00 0.00 6.25 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 K jcn_only_AD sqh,I_chrX_6118043_6119039,I_chrX_6118150_6118725,I_chrX_6118150_6118729,I_chrX_6118150_6118790,I_chrX_6118150_6118800 chrX - chrX_6118150_6119035;chrX_6118150_6118725;chrX_6118150_6119039;chrX_6118150_6118949 chrX_6118150_6118729 chrX_6118050_6118149;chrX_6119040_6119139 0.08 0.45 0.00 0.00 0.42 0.40 0.14 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.11 0.22 0.09 0.30 0.33 0.00 0.55 0.46 0.00 0.00 0.00 0.15 0.24 0.58 0.12 0.21 0.37 0.00 0.00 0.00 0.08 0.32 0.20 0.00 0.00 0.00 0.13 0.00 0.58 0.31 0.13 0.00 0.23 0.00 0.00 0.16 0.00 0.00 0.18 K cassette RpS11,I_chr2R_8087545_8087625,I_chr2R_8087545_8087698,I_chr2R_8087747_8088193 chr2R - chr2R_8087545_8087932 chr2R_8087545_8087620;chr2R_8087747_8087932 chr2R_8087621_8087746 chr2R_8087476_8087544;chr2R_8087933_8088055 100.00 100.00 100.00 99.98 100.00 100.00 100.00 99.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.96 100.00 99.97 100.00 100.00 99.99 99.98 100.00 100.00 100.00 100.00 99.96 99.97 99.97 100.00 100.00 99.97 100.00 100.00 100.00 100.00 100.00 100.00 99.94 99.96 100.00 99.96 100.00 100.00 99.98 100.00 99.96 100.00 100.00 100.00 100.00 100.00 100.00 99.98 100.00 100.00 99.96 K intron_retention endos,I_chr3L_14024099_14024488,I_chr3L_14024103_14024158,I_chr3L_14024103_14024546,noncoding_12505,I_chr3L_14024496_14024546 chr3L - chr3L_14024103_14024488 chr3L_14024102_14024103;chr3L_14024488_14024489 chr3L_14024003_14024102;chr3L_14024489_14024495 7.02 7.02 5.50 7.43 6.19 5.00 4.72 3.41 6.35 8.25 3.85 10.92 4.00 3.88 4.97 5.65 4.46 4.35 3.76 5.05 3.48 16.48 10.10 8.27 10.53 6.77 2.92 7.78 16.07 9.09 5.15 7.87 9.35 3.77 7.32 16.67 10.10 12.82 6.60 7.73 10.28 5.36 2.02 10.42 9.66 5.85 6.59 9.20 5.19 6.96 8.60 9.46 11.39 14.29 5.26 8.49 9.32 7.11 K jcn_only_AD CG3305,CREI_chr2L_21573959_21574786,E_chr2L_21574285_21574462 chr2L + chr2L_21573425_21574786 chr2L_21573562_21574786 chr2L_21574787_21574886;chr2L_21573392_21573424 100.00 99.53 99.29 99.80 99.58 100.00 99.70 99.72 100.00 100.00 100.00 99.68 100.00 99.48 100.00 99.82 100.00 99.18 99.83 99.23 100.00 98.47 100.00 100.00 100.00 99.76 100.00 100.00 98.51 100.00 99.80 100.00 99.23 99.78 100.00 99.78 100.00 100.00 100.00 100.00 100.00 99.75 100.00 100.00 99.12 99.74 100.00 100.00 99.90 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.80 100.00 K alternative_donor sgg,I_chrX_2528059_2528637,I_chrX_2528131_2535622,RI_chrX_2528212_2535830,I_chrX_2528367_2535622,I_chrX_2528472_2535622,I_chrX_2529065_2563945,I_chrX_2536127_2563666,I_chrX_2563342_2563666,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2528059_2535830 chrX_2528212_2535830 chrX_2535831_2535930;chrX_2528052_2528058 63.16 71.43 57.14 63.16 NA 57.14 57.14 80.00 60.00 NA 44.44 71.43 NA 66.67 71.43 64.71 50.00 45.45 61.54 66.67 NA NA 50.00 NA NA NA NA NA NA NA 72.73 NA NA 77.78 NA NA NA NA NA 36.36 NA 68.75 66.67 80.00 NA NA NA NA 63.16 NA 55.56 50.00 NA NA 75.00 NA NA NA K intron_retention Tsp39D,I_chr2L_21344737_21348016,I_chr2L_21344737_21348020,chr2L_21344740_21345592.0,I_chr2L_21345440_21345499 chr2L + chr2L_21344737_21355476 chr2L_21344736_21344737;chr2L_21355476_21355477 chr2L_21344637_21344736;chr2L_21355477_21355594 4.42 5.26 3.92 8.06 0.00 0.00 7.59 3.57 7.35 0.00 5.88 4.39 1.92 1.69 6.56 5.98 5.41 6.82 2.08 2.50 9.09 12.12 5.41 4.08 6.67 4.84 7.32 23.53 0.00 9.52 1.37 0.00 22.73 4.72 5.26 16.67 10.53 0.00 6.06 4.44 0.00 3.19 7.27 5.41 0.00 8.70 4.35 5.71 2.00 0.00 4.08 3.45 NA 0.00 2.78 0.00 0.00 0.00 K intron_retention lap,I_chr3R_3017854_3019314 chr3R + chr3R_3016887_3017110 chr3R_3016886_3016887;chr3R_3017110_3017111 chr3R_3016856_3016886;chr3R_3017111_3017213 5.36 NA NA 0.00 NA 0.00 18.18 8.33 5.41 NA NA 9.09 12.50 NA 0.00 7.14 NA 0.00 12.50 6.45 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 5.71 NA NA 0.00 NA NA 0.00 NA 5.36 0.00 NA NA 0.00 NA 0.00 9.68 NA NA NA NA NA 10.00 NA NA NA K alternative_donor I_chr3L_3151185_3151263,CG32280 chr3L + chr3L_3165222_3167941;chr3L_3165255_3167941;chr3L_3165352_3167941;chr3L_3165390_3167941;chr3L_3165704_3167941 chr3L_3165407_3167941 chr3L_3167942_3168265;chr3L_3165212_3165221 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 50.00 0.00 0.00 NA NA NA NA NA 0.00 0.00 K jcn_only_AA MRP,F_chr2L_12727117_12736035 chr2L + chr2L_12724344_12724764 chr2L_12724344_12724471 chr2L_12724206_12724343 0.44 0.00 0.00 0.54 0.00 0.72 0.62 0.29 0.00 0.00 0.92 0.44 0.48 0.00 0.00 0.27 0.83 0.00 0.00 0.00 0.66 0.00 0.83 0.00 0.37 0.51 0.50 0.74 2.07 0.00 0.63 1.32 1.22 0.00 1.68 4.07 1.28 1.58 0.29 0.61 0.30 0.27 0.00 2.48 0.56 0.30 0.00 0.16 0.77 0.53 0.73 0.00 0.51 0.79 0.00 0.48 0.41 0.00 K alternative_donor E(Pc) chr2R + chr2R_7339889_7340897;chr2R_7339807_7340897 chr2R_7339818_7340897 chr2R_7340898_7340908;chr2R_7339722_7339806 54.55 NA NA 50.00 NA NA 66.67 33.33 42.86 44.44 NA 57.14 NA NA NA 50.00 NA NA NA 58.33 NA 62.50 50.00 37.50 NA NA NA 55.56 53.85 57.14 NA NA 41.67 NA 42.86 54.55 71.43 NA NA 68.18 NA 42.86 NA 66.67 NA 50.00 NA 56.00 42.86 NA 71.43 NA 85.71 NA NA NA NA 66.67 K intron_retention 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5987603_5991760,I_chr2R_5988662_5991760,I_chr2R_5988666_5991760,I_chr2R_5988919_5991760,I_chr2R_5988931_5991760,I_chr2R_5990647_5991760,I_chr2R_5991249_5991760,I_chr2R_5991689_5991760,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5987356_5991760 chr2R_5987355_5987356;chr2R_5991760_5991761 chr2R_5987330_5987355;chr2R_5991761_5991860 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.96 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 K alternative_donor CG11658,I_chr3L_11704048_11704107 chr3L - chr3L_11700672_11701407;chr3L_11700672_11701491 chr3L_11700672_11701507 chr3L_11700405_11700671;chr3L_11701508_11701663 64.59 NA NA NA NA 50.00 36.36 NA 44.44 NA 50.00 66.67 75.00 NA NA 70.00 62.50 NA 66.67 76.19 NA NA 60.00 83.33 50.00 NA 75.00 NA 55.56 NA NA NA 50.00 37.50 NA 81.82 NA NA 77.78 62.50 NA 56.25 NA NA NA 69.23 66.67 78.57 61.54 NA 66.67 NA NA NA NA NA NA NA N alternative_donor CG17841,I_chrX_10264610_10275691 chrX + chrX_10262793_10275691 chrX_10275483_10275691 chrX_10275692_10275791;chrX_10262023_10262792 2.83 2.59 2.26 2.20 2.36 2.52 2.56 1.96 2.67 2.99 1.63 2.51 3.12 2.83 2.60 2.19 2.83 3.37 3.42 5.06 1.85 5.05 2.35 2.29 3.23 2.88 4.00 4.39 4.03 3.42 4.05 3.61 3.21 2.54 4.21 3.61 1.99 2.46 2.67 2.86 3.03 3.19 2.59 2.13 2.38 3.05 4.76 3.21 2.24 4.44 4.10 1.94 3.39 2.50 2.47 3.12 6.41 1.98 K alternative_acceptor CG5245,Pros25 chr3R + chr3R_8257945_8258014 chr3R_8257945_8258008 chr3R_8257789_8257944;chr3R_8258015_8258279 100.00 100.00 100.00 100.00 100.00 100.00 99.35 100.00 99.60 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.00 100.00 100.00 100.00 99.61 100.00 100.00 100.00 100.00 100.00 99.08 100.00 99.15 100.00 100.00 100.00 99.07 100.00 99.48 99.39 99.51 100.00 100.00 100.00 100.00 100.00 100.00 99.56 100.00 100.00 100.00 99.43 100.00 99.12 100.00 100.00 100.00 99.52 100.00 99.48 K intron_retention CG5455,I_chr3R_22287369_22288750 chr3R + chr3R_22293810_22293867 chr3R_22293809_22293810;chr3R_22293867_22293868 chr3R_22293266_22293809;chr3R_22293868_22294520 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.85 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 NA 0.00 0.00 NA 0.00 0.00 N alternative_acceptor noncoding_7217 chr2R + chr2R_12100101_12105155 chr2R_12100101_12100210 chr2R_12099944_12100100;chr2R_12105156_12105401 100.00 100.00 91.67 100.00 100.00 100.00 100.00 90.91 96.15 80.00 100.00 100.00 88.89 91.67 83.33 94.12 88.89 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 87.50 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 83.33 87.50 100.00 100.00 100.00 80.00 100.00 80.00 100.00 100.00 95.00 66.67 90.00 100.00 100.00 66.67 90.91 100.00 100.00 75.00 N multi_cassette CG17018,R_chr2L_22312023_22363414,CEI_chr2L_22325847_22356902 chr2L + chr2L_22354402_22363429 chr2L_22354402_22354465;chr2L_22354723_22354811;chr2L_22354970_22363429 chr2L_22354466_22354722;chr2L_22354812_22354969 chr2L_22354334_22354401;chr2L_22363430_22363514 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.38 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG13603,I_chr3R_19816750_19817495,I_chr3R_19825840_19825904 chr3R - chr3R_19812032_19812097 chr3R_19812031_19812032;chr3R_19812097_19812098 chr3R_19811888_19812031;chr3R_19812098_19812333 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Exp6,RI_chrX_365966_366158,I_chrX_369347_369797 chrX - chrX_365945_366158 chrX_365966_366158 chrX_366159_366258;chrX_365866_365944 0.00 0.00 NA 8.82 0.00 NA 3.85 0.00 2.70 NA NA 5.71 0.00 0.00 0.00 5.00 0.00 0.00 0.00 2.78 NA 3.33 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 2.17 0.00 4.35 5.56 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 6.25 0.00 0.00 0.00 3.57 0.00 0.00 K intron_retention CG12825 chr2R + chr2R_3677006_3677081 chr2R_3677005_3677006;chr2R_3677081_3677082 chr2R_3676926_3677005;chr2R_3677082_3677217 12.50 NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG18317,RI_chr2L_1718492_1723881,I_chr2L_1718904_1718995,RI_chr2L_1718904_1724234 chr2L - chr2L_1718492_1723881 chr2L_1718492_1718695;chr2L_1718904_1723881 chr2L_1718696_1718903 chr2L_1718421_1718491;chr2L_1723882_1723981 98.41 97.87 100.00 92.86 100.00 100.00 100.00 97.06 98.31 98.15 100.00 96.43 100.00 94.12 100.00 100.00 95.24 100.00 100.00 97.30 100.00 94.00 100.00 98.15 100.00 95.83 100.00 98.18 98.04 100.00 100.00 97.14 98.41 97.62 100.00 100.00 100.00 98.00 98.61 98.90 100.00 98.08 88.24 100.00 98.00 97.78 98.00 100.00 97.87 97.67 100.00 100.00 97.14 97.22 96.77 100.00 100.00 97.92 K intron_retention CG30122,I_chr2R_14526123_14526189 chr2R - chr2R_14521791_14523647 chr2R_14521790_14521791;chr2R_14523647_14523648 chr2R_14520931_14521790;chr2R_14523648_14523776 80.91 77.78 83.33 94.12 NA NA 81.82 93.33 92.59 NA NA 73.68 69.23 NA 92.31 100.00 80.00 100.00 71.43 70.97 NA 75.00 85.71 36.36 NA 92.86 71.43 NA 80.00 94.12 62.50 63.64 86.67 81.82 NA 96.67 60.00 50.00 75.00 57.14 NA 94.12 88.89 53.33 NA 63.16 NA 76.19 82.61 NA 52.94 87.50 NA NA 92.86 NA NA 85.71 K intron_retention Gel,RI_chr3R_62662_62721,RI_chr3R_62666_63346,I_chr3R_62933_63346,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_61047_62274 chr3R_61046_61047;chr3R_62274_62275 chr3R_61015_61046;chr3R_62275_62526 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.33 0.23 0.00 0.00 0.00 0.00 0.50 0.00 0.53 0.00 0.00 0.00 0.08 0.00 0.00 0.21 0.00 0.00 0.70 0.35 0.00 2.58 0.77 0.28 0.00 0.60 0.26 0.35 0.00 0.00 0.43 0.00 0.53 0.00 0.26 0.00 0.00 0.00 0.00 0.34 0.27 0.36 0.74 0.00 0.00 0.00 0.00 0.62 0.35 0.25 0.47 K jcn_only_AD CG13568,I_chr2R_19941242_19941302 chr2R - chr2R_19940843_19940901 chr2R_19940843_19940896 chr2R_19940721_19940842;chr2R_19940902_19940934 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention mys,I_chrX_7958795_7961094 chrX + chrX_7959566_7961094 chrX_7959565_7959566;chrX_7961094_7961095 chrX_7959481_7959565;chrX_7961095_7961194 6.42 4.73 7.61 5.96 6.73 7.04 11.17 6.43 4.77 1.32 4.03 7.76 29.03 8.99 7.10 5.76 8.22 6.54 5.80 8.50 3.74 3.27 2.28 4.83 4.59 8.65 3.80 14.29 10.26 11.58 6.42 4.55 10.14 7.54 5.19 7.62 3.87 2.86 4.05 10.69 12.12 4.76 7.23 1.48 6.52 8.60 4.00 18.00 5.57 6.45 3.46 5.13 2.99 0.00 7.96 5.77 1.79 11.32 N jcn_only_AA sgg,I_chrX_2529065_2563945,I_chrX_2536127_2563666,I_chrX_2555127_2563666,I_chrX_2563342_2563666,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2555127_2563945;chrX_2555127_2563666 chrX_2555127_2555372 chrX_2555119_2555126 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.47 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA MB8.chr3R.pasa.66,ref1,RI_chr3R_2904130_2904237,RI_chr3R_2904305_2904543,I_chr3R_2904452_2904543 chr3R - chr3R_2904305_2904543;chr3R_2904452_2904543 chr3R_2904130_2904543 chr3R_2904544_2904643;chr3R_2904030_2904129 97.58 97.20 100.00 93.72 95.97 98.03 98.28 96.65 98.26 97.58 95.68 96.15 93.40 99.19 96.79 97.92 97.83 98.64 92.31 98.14 96.32 95.85 98.07 98.66 97.15 94.34 93.14 94.74 97.83 96.25 97.14 96.45 97.89 98.02 97.41 98.06 97.66 97.77 97.85 97.14 93.08 98.20 94.64 97.42 98.60 97.37 97.45 95.92 98.89 96.64 98.28 96.45 98.25 98.76 100.00 98.81 99.20 99.48 K intron_retention tomosyn,I_chrX_12531219_12531470,I_chrX_12534873_12541731,noncoding_23357,I_chrX_12548772_12549203 chrX + chrX_12534873_12542569 chrX_12534872_12534873;chrX_12542569_12542570 chrX_12534773_12534872;chrX_12542570_12542638 0.00 NA NA 3.23 NA NA NA NA 9.09 NA NA NA NA NA 0.00 0.00 NA NA 0.00 7.41 NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 9.09 NA NA 0.00 0.00 NA 0.00 NA 5.56 NA 0.00 NA 0.00 NA 9.09 10.00 NA NA NA NA NA NA 0.00 NA 0.00 K alternative_acceptor RpL12,I_chr2R_19948517_19948655,RI_chr2R_19948517_19948677,I_chr2R_19948517_19948682 chr2R + chr2R_19948517_19948672;chr2R_19948517_19948677;chr2R_19948517_19948655 chr2R_19948517_19948682 chr2R_19948417_19948516;chr2R_19948683_19948755 0.05 0.05 0.00 0.00 0.07 0.06 0.05 0.05 0.00 0.12 0.06 0.03 0.00 0.00 0.05 0.05 0.00 0.06 0.07 0.02 0.00 0.00 0.20 0.05 0.09 0.00 0.05 0.08 0.29 0.08 0.23 0.08 0.00 0.09 0.24 0.08 0.15 0.06 0.04 0.00 0.08 0.03 0.08 0.00 0.22 0.20 0.04 0.11 0.06 0.06 0.00 0.08 0.04 0.08 0.05 0.04 0.15 0.05 K intron_retention Hydr2,RI_chr2L_3164075_3164159 chr2L + chr2L_3167559_3167623 chr2L_3167558_3167559;chr2L_3167623_3167624 chr2L_3167204_3167558;chr2L_3167624_3167973 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chrX_21869837_21869915,CG14618 chrX + chrX_21876382_21876472 chrX_21876381_21876382;chrX_21876472_21876473 chrX_21875457_21876381;chrX_21876473_21876889 1.93 0.00 NA 14.29 10.53 6.25 6.67 0.00 13.95 NA NA 15.79 NA NA 16.67 NA 13.33 0.00 NA 9.09 7.69 0.00 0.00 0.00 NA NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA 3.85 NA 13.04 15.79 NA 14.29 NA NA 0.00 0.00 0.00 NA 6.25 6.06 8.70 0.00 0.00 0.00 NA 0.00 0.00 NA K intron_retention CG4612 chr2R - chr2R_20412066_20412296 chr2R_20412065_20412066;chr2R_20412296_20412297 chr2R_20410888_20412065;chr2R_20412297_20413174 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention nod,I_chrX_11475074_11475402 chrX + chrX_11475938_11476071 chrX_11475937_11475938;chrX_11476071_11476072 chrX_11475403_11475937;chrX_11476072_11476217 6.25 4.88 0.00 8.57 3.33 0.00 11.11 7.41 7.25 10.34 10.00 4.62 0.00 8.70 0.00 15.38 10.53 0.00 0.00 3.03 5.26 5.26 6.38 4.88 6.67 0.00 5.56 8.33 11.36 0.00 13.16 7.89 0.00 5.71 6.67 2.13 5.62 4.35 7.81 5.63 0.00 5.26 6.25 4.65 0.00 7.55 13.51 0.00 9.52 15.38 9.80 10.00 7.69 13.89 8.11 9.76 25.93 0.00 K jcn_only_AD Gs1l,I_chr2L_4456517_4456723,I_chr2L_4458058_4458120 chr2L - chr2L_4456521_4456723;chr2L_4456521_4456725 chr2L_4456521_4456719 chr2L_4456386_4456520;chr2L_4456726_4456801 13.96 NA NA 6.90 8.00 5.00 10.20 7.14 9.64 NA 14.29 9.52 25.00 10.00 16.67 10.71 3.70 21.74 7.69 18.92 3.03 NA NA 28.57 NA 13.64 NA NA NA NA 10.00 NA 29.73 14.81 NA NA 28.57 NA 39.13 32.14 28.57 12.07 13.64 26.92 10.34 27.50 NA 18.75 19.44 NA NA 37.50 NA NA 9.68 16.00 20.83 12.90 K intron_retention CG6707 chr3L - chr3L_9891303_9891622 chr3L_9891302_9891303;chr3L_9891622_9891623 chr3L_9891029_9891302;chr3L_9891623_9891693 7.23 10.53 2.86 7.79 3.57 8.82 10.39 6.76 2.92 3.45 0.00 3.70 8.33 10.34 4.26 8.89 0.00 2.94 6.38 2.86 1.89 14.81 10.42 4.44 7.14 17.14 11.76 10.53 17.07 12.50 12.20 0.00 12.20 4.41 10.53 8.33 7.32 8.33 6.67 6.41 11.54 4.35 4.17 9.76 0.00 7.41 6.45 11.54 5.26 5.71 6.25 5.00 7.69 NA 8.00 9.52 3.92 9.30 K jcn_only_AA CG8414,Ric chr2R - chr2R_11989269_11989339 chr2R_11989287_11989339 chr2R_11989340_11989555;chr2R_11987199_11989268 98.34 NA NA 95.65 NA NA 94.12 96.67 100.00 NA NA 100.00 NA NA NA 96.55 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA 92.31 94.29 NA NA NA NA NA NA NA NA 100.00 K intron_retention I_chrX_15223901_15223968,HDAC6,I_chrX_15232958_15233665 chrX + chrX_15232958_15233659 chrX_15232957_15232958;chrX_15233659_15233660 chrX_15232913_15232957;chrX_15233660_15234340 5.33 0.00 6.67 NA 0.00 18.75 NA 11.11 12.12 NA NA 12.12 NA NA NA NA NA NA NA 15.38 7.69 7.41 6.90 0.00 5.26 NA 5.26 NA 0.00 0.00 9.68 0.00 8.33 5.26 0.00 NA 4.17 6.06 5.41 0.00 5.56 12.12 NA 0.00 0.00 0.00 0.00 6.25 10.71 13.79 0.00 NA 0.00 3.23 11.76 8.33 0.00 NA K intron_retention RI_chrX_11473566_11473702,roX2,noncoding_23149,I_chrX_11475074_11475402 chrX + chrX_11473562_11473702 chrX_11473561_11473562;chrX_11473702_11473703 chrX_11473545_11473561;chrX_11473703_11473726 19.05 NA NA NA NA NA NA 19.05 19.05 NA NA 0.00 NA NA NA 27.78 NA NA NA 14.81 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA 19.05 NA NA NA NA NA NA NA 13.33 35.71 NA NA 14.29 NA NA 35.71 NA NA NA NA NA 35.71 NA NA NA K jcn_only_AA Rnp4F,I_chrX_5214525_5214591 chrX - chrX_5214525_5214591 chrX_5214538_5214591 chrX_5214592_5214691;chrX_5214425_5214524 99.08 98.80 98.25 100.00 100.00 100.00 98.36 100.00 99.10 96.43 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 98.96 100.00 100.00 98.04 100.00 100.00 100.00 98.53 100.00 96.49 98.48 94.74 98.36 98.78 98.55 98.28 100.00 99.08 97.26 97.03 98.02 100.00 99.12 100.00 100.00 100.00 100.00 97.78 97.44 99.05 97.26 98.94 98.18 98.36 100.00 96.30 97.62 100.00 98.55 K intron_retention mld,atl chr3R + chr3R_20451535_20457504 chr3R_20451534_20451535;chr3R_20457504_20457505 chr3R_20451524_20451534;chr3R_20457505_20457813 2.50 9.09 0.00 3.85 NA 0.00 7.32 5.56 0.00 NA 5.56 0.00 5.26 4.35 0.00 4.76 0.00 NA 0.00 6.12 0.00 10.81 5.26 0.00 NA 0.00 0.00 3.70 16.67 0.00 0.00 6.67 4.35 0.00 0.00 8.33 4.55 5.26 NA 2.13 0.00 6.67 NA 4.17 0.00 0.00 0.00 2.86 4.44 0.00 6.45 0.00 0.00 10.53 3.70 0.00 NA 0.00 K intron_retention CG11267 chr3L + chr3L_13009265_13009456 chr3L_13009264_13009265;chr3L_13009456_13009457 chr3L_13009024_13009264;chr3L_13009457_13009618 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.84 0.67 0.00 0.00 0.00 0.00 1.21 0.90 0.74 0.81 0.71 0.00 0.61 0.00 1.05 0.00 0.32 0.00 0.00 0.00 1.00 0.00 0.69 0.00 1.37 0.00 0.00 0.00 0.00 0.47 0.00 0.36 0.00 0.00 1.18 0.00 1.01 0.90 0.27 0.00 0.67 0.61 0.80 0.62 0.50 0.00 0.00 1.01 0.00 0.00 0.51 K intron_retention NFAT,RI_chrX_13543535_13546911,I_chrX_13544101_13544542 chrX + chrX_13544101_13546911 chrX_13544100_13544101;chrX_13546911_13546912 chrX_13544001_13544100;chrX_13546912_13546918 2.78 NA 5.88 0.00 NA NA 6.25 10.53 2.78 NA NA 0.00 NA NA NA 8.33 0.00 NA NA 14.29 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA 3.57 NA NA NA NA NA NA 4.35 NA NA NA NA NA 0.00 NA NA NA K intron_retention CG6995 chr3R + chr3R_20644161_20644307 chr3R_20644160_20644161;chr3R_20644307_20644308 chr3R_20644133_20644160;chr3R_20644308_20644422 0.00 NA 0.00 5.56 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 K jcn_only_AD sgg,I_chrX_2528059_2528637,I_chrX_2528131_2535622,RI_chrX_2528212_2535830,I_chrX_2528367_2535622,I_chrX_2528472_2535622,I_chrX_2529065_2563945,I_chrX_2536127_2563666,I_chrX_2563342_2563666,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2528059_2535622;chrX_2528212_2535622 chrX_2528288_2535622 chrX_2535623_2535722;chrX_2528052_2528058 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 1.01 NA 0.00 2.50 0.00 0.00 0.00 1.56 0.00 3.85 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 2.17 NA NA 0.00 NA NA NA 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention CG9231,CG14100 chr3L - chr3L_19578785_19578848 chr3L_19578784_19578785;chr3L_19578848_19578849 chr3L_19578098_19578784;chr3L_19578849_19579328 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention SP2637,Gint3 chr2R - chr2R_14529820_14529909 chr2R_14529819_14529820;chr2R_14529909_14529910 chr2R_14529637_14529819;chr2R_14529910_14530267 0.00 0.00 0.00 2.82 0.00 0.00 0.00 0.00 1.47 1.12 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.74 0.81 3.80 0.00 2.34 4.35 1.57 2.40 0.00 0.00 2.44 2.70 1.23 0.00 2.39 0.00 1.06 2.27 1.37 0.00 0.00 1.72 0.00 2.36 0.00 1.34 0.00 0.00 4.55 0.00 0.00 0.00 2.53 0.00 0.00 2.27 K jcn_only_AD RpS25,I_chr3R_7041333_7041414,I_chr3R_7041347_7041413,I_chr3R_7041347_7041556,RI_chr3R_7044164_7044221 chr3R - chr3R_7041347_7041556;chr3R_7041347_7041471 chr3R_7041347_7041414 chr3R_7041267_7041346;chr3R_7041557_7041598 99.94 99.93 99.88 99.90 99.95 99.94 99.95 99.92 99.94 99.94 99.94 99.89 99.95 99.91 99.96 99.90 99.94 99.97 99.94 99.91 99.96 98.16 99.92 99.94 99.98 99.86 99.96 99.85 99.90 99.93 99.95 99.94 99.88 99.93 99.92 99.94 99.95 99.95 99.96 99.86 99.95 99.92 99.93 99.98 99.96 99.95 99.92 99.95 99.92 99.83 99.94 99.98 99.96 99.96 99.92 99.96 99.98 99.93 K jcn_only_AD Atg18,I_chr3L_8182683_8182941 chr3L + chr3L_8180503_8180578;chr3L_8180319_8180578 chr3L_8180294_8180578 chr3L_8180579_8180676;chr3L_8180118_8180293 87.10 80.68 90.36 87.68 87.88 85.51 92.86 78.38 84.80 82.93 94.64 87.31 92.42 87.14 82.24 85.11 84.15 85.07 84.44 83.11 89.77 89.51 89.31 85.19 84.21 88.64 84.00 88.46 75.38 89.69 88.99 85.71 86.50 88.24 80.52 94.55 91.87 92.17 79.63 86.26 88.89 81.56 84.75 91.35 90.24 86.96 84.00 87.10 87.74 87.32 82.69 70.69 79.69 95.59 88.79 85.71 87.61 90.72 K alternative_donor I_chr2L_8029734_8029787,Cka,CG7429 chr2L + chr2L_8030840_8032059;chr2L_8031338_8032059;chr2L_8031163_8032059;chr2L_8031036_8032059 chr2L_8031309_8032059 chr2L_8032060_8032641;chr2L_8030749_8030839 13.18 32.35 13.51 14.53 10.26 12.28 18.90 16.13 11.11 14.10 9.00 15.83 11.11 14.71 18.42 13.18 11.43 15.62 15.19 7.82 12.36 11.11 8.21 13.59 13.24 17.57 16.67 13.41 10.00 9.26 14.29 9.62 18.97 16.83 11.48 16.67 6.74 58.33 10.09 11.36 15.62 16.79 18.52 11.11 7.46 11.29 5.17 8.11 17.24 8.57 10.17 14.75 7.89 7.46 14.89 13.64 12.33 8.70 K jcn_only_AA Adf1,CG15908_CG9410 chr2R + chr2R_2549954_2550129 chr2R_2549954_2550073 chr2R_2549797_2549953;chr2R_2550130_2550262 100.00 96.97 97.87 96.23 100.00 100.00 100.00 100.00 100.00 NA 95.24 96.92 96.97 92.86 100.00 98.21 100.00 100.00 97.56 100.00 100.00 NA 97.44 100.00 NA 96.30 100.00 NA NA NA 100.00 NA NA 98.21 100.00 100.00 100.00 100.00 94.12 90.91 NA 100.00 100.00 100.00 91.67 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 98.04 100.00 100.00 100.00 K intron_retention alphaCop chr3L - chr3L_1645062_1645169 chr3L_1645061_1645062;chr3L_1645169_1645170 chr3L_1644012_1645061;chr3L_1645170_1645223 49.09 44.00 33.64 53.90 17.74 36.11 45.69 33.56 29.95 72.73 22.83 36.50 16.25 31.03 26.09 32.05 30.85 16.88 31.00 28.11 14.08 70.51 86.27 75.76 77.42 43.30 92.73 76.83 87.84 72.22 40.00 41.94 39.81 37.59 71.43 88.00 70.73 74.29 59.38 62.35 67.57 28.18 32.50 72.34 22.22 71.88 58.33 51.67 36.60 76.67 77.27 81.82 60.00 84.62 33.64 75.00 62.16 49.09 K intron_retention CG42271,RI_chrX_14127297_14127804 chrX - chrX_14127074_14127137 chrX_14127073_14127074;chrX_14127137_14127138 chrX_14126774_14127073;chrX_14127138_14127296 0.00 0.00 0.00 11.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG8786 chr3L - chr3L_19633419_19634164 chr3L_19633418_19633419;chr3L_19634164_19634165 chr3L_19632984_19633418;chr3L_19634165_19634318 30.77 NA 30.77 33.33 NA NA 45.00 25.00 42.86 NA NA 33.33 NA NA NA 25.00 30.77 NA 61.54 7.41 NA 50.00 20.00 NA NA 15.38 NA NA NA NA NA NA 30.77 35.71 NA NA NA NA NA 26.32 NA 36.84 NA NA NA NA NA NA 23.81 NA NA NA NA NA NA NA NA NA K intron_retention Keap1 chr3R - chr3R_12900839_12900902 chr3R_12900838_12900839;chr3R_12900902_12900903 chr3R_12899730_12900838;chr3R_12900903_12901107 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 2.63 NA 0.00 2.50 0.00 NA NA 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention CG2065 chr2R + chr2R_3552340_3552400 chr2R_3552339_3552340;chr2R_3552400_3552401 chr2R_3552080_3552339;chr2R_3552401_3552792 0.00 0.00 0.00 3.77 0.00 0.00 2.22 0.00 1.43 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 2.38 0.00 3.57 0.00 0.00 2.86 0.00 2.94 0.00 0.00 0.00 1.82 0.00 0.00 0.00 3.33 1.72 0.00 1.85 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 6.52 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 K jcn_only_AA CG9007,I_chr3L_13995402_13996269,I_chr3L_13995402_13996272,I_chr3L_13995402_13996296,I_chr3L_13995480_13996292,RI_chr3L_14010982_14011111 chr3L + chr3L_13995402_13996272;chr3L_13995402_13996296;chr3L_13995402_13996269 chr3L_13995402_13996292 chr3L_13995380_13995401;chr3L_13996297_13996360 92.00 NA 95.00 96.97 NA NA 93.55 92.86 88.24 NA NA 91.67 NA NA 85.71 91.67 NA NA 90.00 80.00 NA NA 95.00 NA NA NA NA NA NA NA 95.24 NA NA 95.24 92.00 NA NA NA NA NA NA 90.62 90.00 NA NA NA NA 100.00 92.31 NA NA NA NA NA 90.48 NA NA NA K intron_retention hppy,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15108288_15111557 chr2R_15108287_15108288;chr2R_15111557_15111558 chr2R_15108271_15108287;chr2R_15111558_15111891 61.90 61.11 53.33 43.33 NA NA 92.31 57.14 64.10 66.67 NA 57.14 NA 60.00 60.00 56.25 54.55 63.64 69.23 43.24 41.67 97.14 86.21 55.56 62.96 61.90 70.83 75.00 56.25 78.95 40.00 NA 57.89 57.14 63.64 84.38 73.53 62.50 67.86 62.50 50.00 57.14 70.00 72.00 53.33 70.59 57.14 60.00 50.00 73.33 51.52 58.82 73.33 53.85 66.67 78.57 77.78 NA K intron_retention att-ORFA,att-ORFB,RI_chr3R_16380642_16382206,noncoding_17915 chr3R - chr3R_16380642_16383128 chr3R_16380641_16380642;chr3R_16383128_16383129 chr3R_16380542_16380641;chr3R_16383129_16383136 8.09 7.14 0.00 9.52 NA NA 0.00 7.69 6.45 0.00 0.00 22.73 NA NA 7.14 9.09 NA 14.29 NA 13.89 0.00 20.00 0.00 0.00 NA 21.43 23.53 16.67 16.67 10.00 0.00 15.00 11.76 8.33 16.67 21.05 9.52 NA 0.00 5.00 9.09 17.65 NA NA 4.17 0.00 0.00 18.52 10.00 NA 8.33 NA 0.00 7.14 0.00 NA 0.00 7.84 K alternative_donor CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516706_21517821;chr3L_21516399_21517821;chr3L_21517168_21517821;chr3L_21516722_21517821;chr3L_21516501_21517821;chr3L_21516918_21517821;chr3L_21516343_21517821;chr3L_21516728_21517821 chr3L_21516330_21517821 chr3L_21517822_21517920;chr3L_21516311_21516329 33.33 12.50 18.18 41.18 60.00 50.00 30.43 63.64 20.00 0.00 14.29 41.18 33.33 54.55 44.44 23.08 50.00 21.43 44.44 41.67 36.36 33.33 16.67 25.00 25.00 40.00 0.00 33.33 0.00 0.00 55.00 33.33 46.15 44.44 0.00 12.50 10.00 33.33 14.29 33.33 50.00 40.74 50.00 15.38 25.00 33.33 0.00 22.22 40.91 25.00 10.00 0.00 100.00 0.00 36.36 20.00 33.33 66.67 K alternative_donor ltd chr2R - chr2R_5066731_5073620 chr2R_5066731_5072721 chr2R_5066373_5066730;chr2R_5073621_5073680 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 83.33 NA 100.00 NA 100.00 100.00 NA NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 N jcn_only_AA Hsc70-5 chr2R - chr2R_10143221_10143338 chr2R_10143254_10143338 chr2R_10143339_10143532;chr2R_10143174_10143220 0.00 0.00 0.00 0.00 0.00 0.00 2.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3L_1494947_1496080,pUf68,cue chr3L - chr3L_1504321_1504387 chr3L_1504320_1504321;chr3L_1504387_1504388 chr3L_1503987_1504320;chr3L_1504388_1505792 0.00 0.00 0.00 3.51 0.00 0.00 2.82 2.15 1.28 2.22 0.00 1.77 0.00 2.17 0.00 2.11 0.00 0.00 0.00 1.24 0.00 7.55 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 2.04 1.74 0.00 1.77 1.94 0.00 2.00 2.27 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Tango5,noncoding_22970,I_chrX_10659836_10661185 chrX - chrX_10656236_10658202 chrX_10656468_10658202 chrX_10658203_10658269;chrX_10655948_10656235 98.77 97.16 98.75 96.18 92.86 98.59 93.81 96.48 98.62 98.72 94.52 97.92 97.92 98.33 96.15 100.00 100.00 95.08 94.20 96.70 92.19 99.41 99.06 99.12 100.00 96.67 100.00 99.51 99.26 99.12 100.00 99.45 99.70 98.72 99.25 99.42 99.04 100.00 97.73 98.77 99.50 97.38 96.15 99.44 98.74 99.13 100.00 99.23 97.84 97.30 99.02 99.07 100.00 99.06 95.56 99.23 97.78 100.00 N intron_retention Rho1,I_chr2R_11990455_11992537,RI_chr2R_11991687_11992537 chr2R + chr2R_11991280_11992429 chr2R_11991279_11991280;chr2R_11992429_11992430 chr2R_11991116_11991279;chr2R_11992430_11992441 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 67.52 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG14709,F_chr3R_7396835_7396923,F_chr3R_7405343_7405539 chr3R + chr3R_7395557_7396774 chr3R_7395557_7396748 chr3R_7394972_7395556;chr3R_7396775_7396834 98.08 97.56 97.30 98.08 100.00 100.00 98.63 95.71 100.00 96.55 97.62 98.63 100.00 100.00 97.56 97.92 100.00 97.44 97.73 100.00 100.00 97.78 98.41 97.92 97.62 97.30 96.36 100.00 96.30 94.12 93.62 100.00 92.68 98.41 97.14 100.00 94.64 97.22 97.50 98.44 100.00 98.59 96.67 98.33 100.00 100.00 96.15 96.67 98.33 96.43 98.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG9009 chrX - chrX_14829306_14829363 chrX_14829305_14829306;chrX_14829363_14829364 chrX_14828083_14829305;chrX_14829364_14829478 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 13.79 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 K intron_retention CG5284,I_chr3L_16086347_16086804 chr3L + chr3L_16088143_16088205 chr3L_16088142_16088143;chr3L_16088205_16088206 chr3L_16087929_16088142;chr3L_16088206_16088954 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette spri,I_chrX_10404621_10469422,I_chrX_10413811_10440661,I_chrX_10417598_10440661,CG15296 chrX - chrX_10404621_10469422 chrX_10404621_10413380;chrX_10413811_10416835;chrX_10417598_10469422 chrX_10413381_10413810;chrX_10416836_10417597 chrX_10404521_10404620;chrX_10469423_10469435 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 93.75 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG32202 chr3L + chr3L_18675478_18675538 chr3L_18675477_18675478;chr3L_18675538_18675539 chr3L_18675302_18675477;chr3L_18675539_18675973 7.14 7.14 0.00 15.15 NA 0.00 8.57 7.50 2.56 NA 0.00 0.00 6.67 9.52 15.00 0.00 NA 0.00 0.00 3.17 9.52 0.00 20.00 15.00 14.29 12.00 40.00 27.78 0.00 4.76 16.67 10.00 0.00 10.53 0.00 NA NA 0.00 4.76 3.45 16.00 17.65 11.76 0.00 9.09 0.00 0.00 0.00 10.81 7.69 0.00 NA 0.00 11.11 11.76 11.76 13.79 5.88 K intron_retention Zyx102EF,I_chr4_1079131_1080044,I_chr4_1079946_1080044,RI_chr4_1079959_1080044,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1079978_1080044 chr4_1079977_1079978;chr4_1080044_1080045 chr4_1079727_1079977;chr4_1080045_1080072 6.19 NA NA 5.71 NA NA 3.64 5.26 11.43 NA NA 12.50 7.69 11.11 NA 21.88 5.26 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 11.11 NA NA NA NA NA 0.00 NA 0.00 14.29 NA NA NA NA NA 7.14 0.00 NA NA NA NA 6.67 NA NA NA K jcn_only_AA CG1265,I_chr3L_4255296_4255550 chr3L + chr3L_4255296_4255609;chr3L_4255296_4255550;chr3L_4255296_4255457 chr3L_4255296_4255353 chr3L_4255196_4255295;chr3L_4255610_4255650 0.00 0.00 1.18 7.35 0.00 0.00 2.50 0.00 0.70 0.00 0.00 0.83 2.00 0.00 1.54 1.00 0.00 2.74 0.00 0.00 1.59 0.00 1.14 0.91 0.00 0.00 0.00 0.00 5.00 0.00 2.78 2.27 0.00 1.85 0.00 0.00 0.91 0.00 0.91 0.00 0.00 0.71 1.96 2.02 0.00 0.00 1.20 0.00 0.00 0.00 1.16 1.39 0.00 2.74 0.00 1.89 0.00 3.03 K alternative_donor CG7757 chr3L + chr3L_19903529_19903601 chr3L_19903533_19903601 chr3L_19903602_19904619;chr3L_19903403_19903528 100.00 88.89 NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA 87.50 100.00 NA NA NA 100.00 NA 100.00 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 88.89 NA 100.00 NA NA 100.00 NA 100.00 NA 92.31 88.89 NA NA NA NA NA NA N alternative_acceptor CkIIalpha,I_chr3L_23092989_23093344,RI_chr3L_23094196_23095221 chr3L + chr3L_23092824_23092891;chr3L_23092824_23093319 chr3L_23092824_23093344 chr3L_23092680_23092823;chr3L_23093345_23093444 63.64 81.82 72.73 26.67 NA NA 36.84 66.67 68.00 NA NA 57.14 16.67 69.23 71.43 72.73 NA 62.50 81.82 45.45 NA NA 66.67 75.00 57.14 NA NA 33.33 NA NA 42.86 NA 57.14 64.29 71.43 20.00 NA NA NA 63.64 NA 78.57 50.00 71.43 NA NA NA NA 53.85 NA NA 66.67 NA NA 85.71 50.00 50.00 25.00 K jcn_only_AD RpS25,I_chr3R_7041333_7041414,I_chr3R_7041347_7041413,I_chr3R_7041347_7041556,RI_chr3R_7044164_7044221 chr3R - chr3R_7041347_7041414;chr3R_7041347_7041471 chr3R_7041347_7041556 chr3R_7041267_7041346;chr3R_7041557_7041598 0.06 0.06 0.11 0.10 0.05 0.06 0.04 0.08 0.05 0.06 0.06 0.11 0.05 0.09 0.04 0.10 0.06 0.03 0.06 0.09 0.04 1.84 0.06 0.05 0.02 0.14 0.04 0.15 0.08 0.07 0.05 0.05 0.10 0.07 0.08 0.05 0.03 0.05 0.04 0.14 0.04 0.08 0.07 0.02 0.04 0.05 0.08 0.04 0.08 0.17 0.06 0.02 0.03 0.04 0.08 0.04 0.01 0.06 K intron_retention CrebB-17A,I_chrX_18261213_18269281,I_chrX_18265640_18266060,I_chrX_18265982_18266063 chrX + chrX_18267247_18267319 chrX_18267246_18267247;chrX_18267319_18267320 chrX_18267067_18267246;chrX_18267320_18267488 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.88 0.00 0.00 0.00 10.91 1.02 5.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.61 1.37 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 1.67 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Mob4 chr2R - chr2R_2583337_2583396 chr2R_2583349_2583396 chr2R_2583397_2583465;chr2R_2583268_2583336 9.09 9.40 10.68 8.70 12.35 4.06 9.17 8.05 8.70 9.49 8.46 7.72 7.86 8.03 5.36 9.60 8.51 6.10 9.56 9.18 7.24 9.80 8.25 8.77 12.92 11.46 9.80 5.03 10.53 12.12 9.64 13.73 9.45 9.80 13.71 6.06 9.22 8.79 10.12 10.80 8.24 7.28 7.19 10.80 8.90 8.70 11.86 6.96 10.19 9.09 8.92 7.27 4.52 9.69 14.48 8.10 7.49 10.06 K jcn_only_AA CG2246,I_chr3R_26421344_26425985,RI_chr3R_26421349_26425985,I_chr3R_26421349_26427017,noncoding_20201 chr3R - chr3R_26421344_26425845 chr3R_26421349_26425845 chr3R_26425846_26425897;chr3R_26421249_26421343 90.12 87.50 89.47 82.61 79.31 94.59 92.16 87.18 94.44 NA NA 90.91 87.50 92.59 90.24 90.00 96.00 NA 88.24 89.02 96.30 90.91 82.86 93.02 NA 96.77 91.67 90.00 72.73 NA 84.62 83.33 90.48 96.08 76.67 93.10 82.50 88.00 96.00 94.55 86.36 91.07 92.31 88.00 97.37 93.48 85.42 91.67 97.33 95.45 95.00 79.17 88.89 93.10 86.67 83.33 84.48 86.44 K jcn_only_AD sgg,I_chrX_2528059_2528637,I_chrX_2528131_2535622,RI_chrX_2528212_2535830,I_chrX_2528367_2535622,I_chrX_2528472_2535622,I_chrX_2529065_2563945,I_chrX_2536127_2563666,I_chrX_2563342_2563666,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2528288_2535622;chrX_2528059_2535622 chrX_2528212_2535622 chrX_2535623_2535722;chrX_2528052_2528058 39.58 36.36 41.30 39.66 NA 38.10 44.23 31.82 35.35 NA 60.71 40.00 21.88 46.67 38.24 32.81 58.33 57.69 39.58 35.59 NA NA 34.38 48.00 NA 46.67 48.00 NA NA NA 41.30 NA NA 37.29 NA NA NA 50.00 NA 41.67 NA 46.15 26.47 43.48 NA NA 35.00 NA 33.33 NA 31.82 23.81 NA NA 37.50 NA NA NA K intron_retention CG6509 chr2L - chr2L_11516658_11516722 chr2L_11516657_11516658;chr2L_11516722_11516723 chr2L_11516509_11516657;chr2L_11516723_11516801 92.59 100.00 93.33 89.47 100.00 78.95 96.55 87.10 88.37 91.67 100.00 90.62 95.00 76.00 82.35 92.31 95.45 94.44 94.44 92.86 66.67 95.65 86.21 90.48 94.74 95.00 87.10 88.24 100.00 90.91 91.30 NA 86.36 91.43 83.33 95.65 94.12 93.75 87.50 90.62 100.00 97.30 95.00 89.47 NA 92.31 90.00 88.89 96.55 100.00 96.55 90.91 NA NA 95.83 100.00 NA 92.86 K multi_cassette ssp4,I_chr2R_13409412_13410357,RI_chr2R_13409412_13411004,I_chr2R_13409412_13411328,I_chr2R_13409412_13411588,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13409406_13411588 chr2R_13409406_13410357;chr2R_13410466_13411004;chr2R_13411077_13411328;chr2R_13411404_13411588 chr2R_13410358_13410465;chr2R_13411005_13411076;chr2R_13411329_13411403 chr2R_13409337_13409405;chr2R_13411589_13411688 10.00 7.69 NA 30.00 7.14 12.50 12.50 23.08 12.00 NA NA 7.14 NA 7.69 18.18 25.00 28.57 14.29 22.22 9.52 NA 5.00 11.11 9.09 7.69 8.33 22.22 5.26 NA 10.00 11.11 7.69 9.09 11.11 14.29 6.67 10.53 22.22 4.35 2.94 10.00 14.29 NA 6.67 10.00 10.53 10.00 NA 5.56 16.67 12.50 30.00 NA 7.69 7.69 6.67 NA 22.22 K alternative_acceptor CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2815657_2816013;chr2R_2815654_2816013 chr2R_2815768_2816013 chr2R_2816014_2816113;chr2R_2815599_2815653 41.67 33.33 NA 50.00 NA NA 57.14 NA 42.86 NA NA 44.44 NA NA NA NA NA NA NA 38.89 NA 63.64 28.57 25.00 NA NA 33.33 NA 50.00 41.67 NA NA 35.71 42.86 NA 50.00 27.78 33.33 54.55 33.33 33.33 50.00 NA NA 44.44 41.67 42.86 33.33 66.67 36.36 40.00 NA NA NA NA 33.33 NA NA N alternative_acceptor CG14939,RI_chr2L_11812683_11813150 chr2L - chr2L_11811446_11811593 chr2L_11811500_11811593 chr2L_11811594_11812682;chr2L_11810098_11811445 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.23 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Sh3beta,I_chr3L_7358062_7358169,RI_chr3L_7358065_7358169,I_chr3L_7361085_7361784 chr3L - chr3L_7358065_7358169 chr3L_7358064_7358065;chr3L_7358169_7358170 chr3L_7357965_7358064;chr3L_7358170_7358269 90.00 NA NA 76.19 NA NA NA NA 90.00 NA NA NA NA NA NA 91.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Acph-1,I_chr3R_25820814_25820871 chr3R - chr3R_25818495_25818550 chr3R_25818494_25818495;chr3R_25818550_25818551 chr3R_25817805_25818494;chr3R_25818551_25818649 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 1.32 2.13 4.26 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.72 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG8372,RI_chr2L_8212717_8212766,RI_chr2L_8212802_8212867 chr2L - chr2L_8212693_8212766 chr2L_8212717_8212766 chr2L_8212767_8212801;chr2L_8212617_8212692 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.78 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.67 NA 4.76 2.38 0.00 NA NA 0.00 NA 0.00 NA 0.00 2.38 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 4.35 0.00 0.00 3.03 3.03 0.00 0.00 3.45 0.00 3.85 0.00 0.00 2.08 0.00 NA 2.78 0.00 0.00 K intron_retention eIF3-S8,I_chr2R_13557316_13557647 chr2R + chr2R_13553665_13553726 chr2R_13553664_13553665;chr2R_13553726_13553727 chr2R_13553537_13553664;chr2R_13553727_13556749 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32075,CG6310 chr3L - chr3L_11057562_11057620 chr3L_11057561_11057562;chr3L_11057620_11057621 chr3L_11056562_11057561;chr3L_11057621_11057803 0.00 NA 0.00 7.41 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 3.23 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 K alternative_donor CG42368,I_chr2L_6380791_6381119 chr2L - chr2L_6394944_6408244 chr2L_6394944_6395379 chr2L_6394864_6394943;chr2L_6408245_6408522 77.78 69.23 69.23 68.18 87.50 77.78 71.43 68.18 73.08 80.00 88.89 72.73 93.33 70.00 84.62 71.43 77.78 66.67 77.78 77.27 88.89 83.33 57.14 80.00 71.43 87.50 88.89 60.00 100.00 100.00 100.00 85.71 75.00 63.16 80.00 66.67 68.75 60.00 83.33 70.59 85.71 84.21 70.00 60.00 80.00 75.00 75.00 73.33 70.83 80.95 83.33 80.00 100.00 87.50 90.91 69.23 93.75 100.00 N jcn_only_AD CG1494 chrX + chrX_21159081_21159147;chrX_21159059_21159147 chrX_21158242_21159147 chrX_21159148_21159527;chrX_21157788_21158241 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA I_chr2R_17169674_17170491,CG10069,I_chr2R_17169897_17170495,I_chr2R_17170432_17170491,I_chr2R_17171765_17171886 chr2R + chr2R_17169897_17169960;chr2R_17169897_17170495 chr2R_17169897_17170491 chr2R_17169889_17169896 97.92 93.48 95.59 96.43 97.87 97.06 97.73 95.31 97.85 96.05 97.50 98.25 92.16 97.96 100.00 98.61 100.00 97.73 97.62 98.47 100.00 99.05 96.25 95.29 98.15 100.00 98.55 100.00 98.89 95.45 98.44 92.98 94.57 97.89 98.15 97.78 97.25 98.59 100.00 96.84 100.00 97.27 95.00 98.28 97.92 98.41 100.00 96.90 98.04 100.00 98.78 100.00 92.73 96.55 98.28 100.00 97.92 97.59 K mutually_exclusive Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8443558_8455071,chr3L_8455204_8456103 chr3L_8443558_8444874,chr3L_8445229_8456103 chr3L_8455072_8455203 chr3L_8444875_8445228 chr3L_8443524_8443557;chr3L_8456104_8456203 25.00 NA NA 50.00 NA NA 25.00 NA 20.00 60.00 NA NA NA NA NA 25.00 NA NA NA NA 20.00 NA NA NA NA 20.00 NA NA 20.00 NA NA NA NA 33.33 NA 50.00 NA NA NA 20.00 NA 20.00 50.00 NA NA 100.00 NA 28.57 20.00 NA NA NA NA NA NA NA NA 25.00 K intron_retention crol,I_chr2L_11799403_11802904 chr2L - chr2L_11799403_11802286 chr2L_11799402_11799403;chr2L_11802286_11802287 chr2L_11799303_11799402;chr2L_11802287_11802336 100.00 100.00 100.00 93.75 88.89 100.00 96.43 93.75 94.12 NA 100.00 96.77 100.00 100.00 91.67 100.00 100.00 100.00 100.00 96.30 100.00 94.87 85.71 91.67 100.00 100.00 100.00 100.00 90.91 100.00 100.00 NA NA 95.24 88.89 90.91 100.00 NA 93.33 93.33 NA 96.00 100.00 93.33 NA NA NA 100.00 100.00 87.50 100.00 NA NA NA 100.00 NA NA NA K intron_retention rl,I_chr2RHet_199154_201722,I_chr2RHet_199154_207044,RI_chr2RHet_203476_203577,RI_chr2RHet_203592_207044,I_chr2RHet_232696_247338,RI_chr2RHet_240197_247338 chr2RHet + chr2RHet_198760_198961 chr2RHet_198759_198760;chr2RHet_198961_198962 chr2RHet_198753_198759;chr2RHet_198962_199153 100.00 91.67 100.00 96.97 NA NA 100.00 96.67 97.14 NA NA 100.00 100.00 91.67 NA 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA 100.00 NA NA NA 100.00 NA 100.00 NA 100.00 NA 87.50 NA NA 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA K intron_retention Kmn1,I_chrX_11466174_11466223 chrX - chrX_11466166_11466223 chrX_11466165_11466166;chrX_11466223_11466224 chrX_11466074_11466165;chrX_11466224_11466323 0.00 0.00 0.00 3.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 3.03 0.00 0.00 0.00 6.25 0.00 0.00 1.59 0.00 3.30 0.00 2.00 0.00 0.00 0.00 0.00 2.06 0.00 0.00 0.79 1.08 1.75 0.00 0.00 0.79 0.00 0.00 2.90 0.00 0.00 6.67 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7215,Prx5 chr3R - chr3R_13991883_13992076 chr3R_13991882_13991883;chr3R_13992076_13992077 chr3R_13991748_13991882;chr3R_13992077_13992793 0.00 0.00 0.00 2.99 0.00 0.74 0.00 1.31 1.28 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.81 0.00 0.56 0.00 0.00 0.98 1.14 0.00 0.00 0.00 7.21 0.00 0.67 0.56 0.00 0.49 0.00 0.00 0.00 0.00 0.64 0.00 0.30 0.00 0.00 0.00 0.00 0.36 0.23 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 K jcn_only_AD msk,I_chr3L_8109906_8110404 chr3L + chr3L_8109630_8110404 chr3L_8109906_8110404 chr3L_8110405_8110504;chr3L_8109278_8109629 0.00 0.00 0.33 0.00 0.42 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.40 0.29 0.00 0.00 0.36 0.00 0.00 0.00 0.56 0.39 0.00 0.00 0.72 0.56 0.00 0.00 0.00 0.69 0.45 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Rab7 chr3R + chr3R_19818863_19819667 chr3R_19818863_19818929;chr3R_19818999_19819667 chr3R_19818930_19818998 chr3R_19818796_19818862;chr3R_19819668_19819903 0.00 0.00 0.62 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.95 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.33 0.99 0.75 0.00 0.00 0.00 0.00 0.81 0.00 0.00 K intron_retention CG14225,I_chrX_19569702_19569879,I_chrX_19573364_19573474 chrX - chrX_19569702_19569836 chrX_19569701_19569702;chrX_19569836_19569837 chrX_19569602_19569701;chrX_19569837_19569924 27.78 21.43 19.12 60.00 23.08 20.00 48.19 30.21 29.84 30.00 27.78 25.21 30.61 27.45 17.39 26.56 37.50 21.92 34.00 22.78 21.95 28.03 31.51 30.49 24.32 28.89 34.92 38.24 56.76 24.14 31.08 24.00 50.00 32.50 28.57 57.58 29.55 22.22 20.54 26.83 23.08 27.18 27.08 28.26 12.50 22.45 28.21 21.05 23.89 28.57 38.89 30.23 12.20 17.65 26.76 28.57 28.57 11.76 K intron_retention Eph,I_chr4_639690_640239,I_chr4_639690_640473,I_chr4_640410_640485,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_639690_640262 chr4_639689_639690;chr4_640262_640263 chr4_639590_639689;chr4_640263_640339 0.00 0.00 0.00 5.66 0.00 0.00 4.35 2.90 2.67 0.00 0.00 2.17 8.33 5.56 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525701_1527189 chr3L_1525700_1525701;chr3L_1527189_1527190 chr3L_1525644_1525700;chr3L_1527190_1527240 68.59 70.59 72.22 46.15 58.33 69.23 76.67 76.92 68.42 NA 93.33 73.91 62.50 71.43 64.71 76.92 61.11 66.67 89.47 64.86 68.75 52.63 70.83 61.11 52.38 NA 50.00 NA 66.67 90.91 75.00 70.00 75.00 72.41 78.57 50.00 64.71 61.11 58.33 75.86 53.85 74.29 64.29 62.07 75.00 70.59 66.67 70.00 76.47 57.14 66.67 77.78 46.15 60.00 70.83 70.59 41.67 58.82 K intron_retention plx,noncoding_14842 chr3R + chr3R_1511667_1512762 chr3R_1511666_1511667;chr3R_1512762_1512763 chr3R_1511624_1511666;chr3R_1512763_1512877 80.19 NA NA 88.89 NA 63.64 83.33 75.00 77.78 77.78 NA 82.35 NA NA 88.89 68.75 NA 87.50 NA 61.11 NA NA 100.00 100.00 NA NA 88.89 100.00 90.00 75.00 NA NA 81.82 64.71 75.00 83.33 100.00 NA NA 78.57 NA 75.00 60.00 NA NA NA NA NA 75.00 NA 83.33 70.00 NA NA 90.91 77.78 NA NA K alternative_acceptor mor chr3R - chr3R_11795125_11795603 chr3R_11795317_11795603 chr3R_11795604_11795814;chr3R_11794297_11795124 72.79 65.55 80.95 75.78 53.85 37.21 71.43 78.12 79.27 59.30 74.36 73.62 67.03 77.53 66.67 84.96 80.30 74.68 80.90 65.29 67.47 42.31 66.67 71.71 79.22 95.00 62.18 47.79 76.69 65.96 81.82 64.12 67.51 75.74 59.13 92.11 75.00 69.49 72.34 77.88 72.79 76.57 78.08 81.67 50.24 79.31 66.20 62.71 81.17 64.75 65.75 73.56 69.61 72.97 78.10 74.24 70.97 66.80 K jcn_only_AA CG14194 chrX + chrX_19088052_19088400;chrX_19088052_19088528 chrX_19088052_19088456 chrX_19087981_19088051;chrX_19088529_19089031 98.75 98.95 98.89 97.37 96.34 98.67 98.39 99.22 100.00 98.31 95.65 99.38 100.00 100.00 96.40 100.00 100.00 98.78 99.00 98.58 97.78 98.02 98.40 95.68 98.75 97.67 98.35 100.00 97.62 100.00 100.00 100.00 98.97 98.51 97.01 98.63 98.85 100.00 97.84 98.04 100.00 98.27 100.00 98.95 100.00 100.00 98.88 95.65 100.00 98.82 99.12 97.06 98.55 95.35 97.78 97.26 95.56 100.00 K jcn_only_AA CG7546 chr3L + chr3L_7505017_7505072 chr3L_7505017_7505069 chr3L_7504805_7505016;chr3L_7505073_7505828 22.86 25.84 23.97 23.67 16.85 20.54 25.00 19.35 21.89 20.37 20.73 25.99 24.24 31.58 17.32 21.98 22.52 21.74 27.00 24.62 23.16 18.75 22.86 22.55 24.69 22.31 21.28 25.42 25.33 21.43 24.80 24.53 22.86 29.05 28.36 35.29 25.75 25.00 21.74 15.51 29.63 25.00 17.24 17.24 28.00 21.13 17.72 27.03 29.83 18.18 25.00 18.52 15.87 19.51 34.04 17.54 17.07 27.94 K intron_retention CG2701,RI_chrX_2612780_2612845,ttm50 chrX - chrX_2613801_2613859 chrX_2613800_2613801;chrX_2613859_2613860 chrX_2613718_2613800;chrX_2613860_2613954 17.52 17.65 0.00 23.33 7.41 3.45 14.29 18.52 12.68 33.33 27.78 17.39 20.00 16.67 6.25 12.50 NA 8.33 8.00 15.52 13.33 38.98 26.23 19.67 23.33 35.71 20.00 15.69 51.35 23.81 43.55 11.11 16.13 11.11 26.67 33.33 15.58 20.37 17.74 20.99 20.51 7.02 22.22 15.52 21.62 22.73 18.60 23.64 15.38 26.83 16.07 17.65 5.71 14.29 16.67 14.63 8.47 10.00 K intron_retention PHGPx chr3L + chr3L_3326368_3327859 chr3L_3326367_3326368;chr3L_3327859_3327860 chr3L_3326358_3326367;chr3L_3327860_3328183 22.64 16.07 21.34 22.50 16.31 16.48 39.94 18.85 20.99 17.41 19.73 34.51 22.64 22.50 23.62 24.18 21.61 27.35 26.51 33.43 20.90 15.86 25.44 23.44 25.71 27.61 34.74 32.09 29.62 32.29 26.06 30.04 19.88 24.62 11.72 47.45 16.57 17.53 22.13 17.42 30.25 19.97 25.48 19.74 24.66 24.40 17.70 26.73 24.61 19.85 20.69 17.24 20.93 22.73 22.99 16.10 22.10 33.79 K alternative_donor CG13784,I_chr2L_7209439_7209522,I_chr2L_7219131_7219918 chr2L - chr2L_7219131_7219943 chr2L_7219131_7219859 chr2L_7219031_7219130;chr2L_7219944_7219956 97.32 92.86 100.00 100.00 93.33 100.00 100.00 100.00 96.97 95.24 100.00 96.67 93.33 93.33 94.12 96.15 100.00 92.31 100.00 97.67 93.75 100.00 100.00 100.00 93.33 100.00 100.00 94.44 96.00 96.55 100.00 100.00 100.00 92.31 95.24 100.00 96.67 92.86 94.12 95.12 100.00 96.55 92.31 93.02 100.00 100.00 82.35 97.67 100.00 84.62 100.00 100.00 90.91 NA 95.45 100.00 100.00 100.00 K intron_retention CG42514,CG42513 chr3L - chr3L_16485204_16485270 chr3L_16485203_16485204;chr3L_16485270_16485271 chr3L_16484948_16485203;chr3L_16485271_16485467 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 K jcn_only_AA Asx chr2R + chr2R_10394855_10394920 chr2R_10394855_10394917 chr2R_10394762_10394854;chr2R_10394921_10394986 4.65 NA NA 4.88 NA NA NA 8.82 4.76 NA NA NA NA NA 0.00 4.55 NA NA NA 18.52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.09 NA NA NA NA NA NA NA 3.70 0.00 NA NA NA NA NA 4.00 NA NA NA K jcn_only_AA CG2811,I_chr2R_20828961_20829772 chr2R - chr2R_20827366_20827428 chr2R_20827378_20827428 chr2R_20827429_20827526;chr2R_20827302_20827365 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG42507,Trl,I_chr3L_14745733_14745798,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14744876_14746310;chr3L_14744876_14745798 chr3L_14744876_14746433 chr3L_14744367_14744875;chr3L_14746434_14746571 60.45 65.85 47.17 59.70 55.00 55.56 56.76 53.03 51.85 53.33 62.86 48.53 NA 64.71 46.15 28.00 53.57 35.90 47.50 49.18 62.86 38.75 71.03 81.13 75.00 63.41 64.62 69.70 60.87 67.07 51.16 52.83 50.68 73.13 65.00 63.08 66.28 56.72 51.49 69.83 46.81 56.70 51.85 77.78 58.73 42.86 60.34 60.55 68.54 65.31 67.16 58.33 70.00 71.19 67.92 69.49 64.29 63.03 K intron_retention Surf4,I_chr3R_11170875_11170959,I_chr3R_11171570_11171630,I_chr3R_11171728_11171801 chr3R - chr3R_11170875_11171630 chr3R_11170874_11170875;chr3R_11171630_11171631 chr3R_11170775_11170874;chr3R_11171631_11171727 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.29 0.00 0.95 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.53 0.00 3.31 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 K jcn_only_AD Tsp42Ee,RI_chr2R_2904593_2904783 chr2R + chr2R_2900622_2904517 chr2R_2901155_2904517 chr2R_2904518_2904592;chr2R_2900538_2900621 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.03 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.02 0.08 0.00 0.00 0.00 0.09 0.00 0.00 0.12 0.12 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.09 0.00 0.00 0.06 0.00 0.02 0.00 0.05 0.11 0.08 0.00 0.05 0.00 0.00 0.07 K alternative_acceptor Nup358,I_chr3R_21078958_21079044 chr3R + chr3R_21078958_21079044 chr3R_21078958_21079013 chr3R_21078858_21078957;chr3R_21079045_21079144 100.00 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.70 100.00 98.36 100.00 100.00 97.73 100.00 98.18 100.00 97.22 97.56 100.00 94.12 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 96.30 100.00 100.00 100.00 98.61 100.00 100.00 96.97 100.00 94.74 100.00 96.30 94.74 100.00 K cassette brp chr2R + chr2R_5420490_5421306 chr2R_5420490_5420850;chr2R_5421040_5421306 chr2R_5420851_5421039 chr2R_5420169_5420489;chr2R_5421307_5423073 87.87 NA NA NA NA NA 100.00 NA 87.50 NA 83.33 100.00 NA NA NA NA NA NA NA 83.33 NA 88.24 100.00 85.71 80.00 NA 83.33 80.00 100.00 100.00 NA NA 100.00 100.00 83.33 100.00 85.71 100.00 87.50 62.50 NA 100.00 NA 100.00 NA 83.33 NA 85.71 100.00 83.33 100.00 NA NA NA NA NA NA NA K intron_retention cryptocephal,I_chr2L_21311307_21311752,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21311532_21311752 chr2L_21311531_21311532;chr2L_21311752_21311753 chr2L_21311464_21311531;chr2L_21311753_21311852 0.00 0.00 3.51 2.94 0.00 4.17 6.15 3.81 4.35 0.00 0.00 2.80 0.00 0.00 1.67 3.75 0.00 0.00 1.23 2.53 0.00 0.00 2.44 0.00 0.00 0.00 5.71 4.00 3.45 5.00 0.00 0.00 0.00 0.00 4.26 0.00 0.00 0.00 0.00 1.90 0.00 0.88 0.00 3.12 0.00 1.43 0.00 0.00 1.75 0.00 5.45 2.04 0.00 6.06 0.00 2.13 0.00 0.00 K jcn_only_AD l(2)s5379,I_chr2L_2227282_2227349,RI_chr2L_2228057_2229265,I_chr2L_2229012_2229265,I_chr2L_2229179_2229265 chr2L + chr2L_2228057_2229265;chr2L_2229012_2229265 chr2L_2227282_2229265 chr2L_2229266_2229365;chr2L_2227182_2227281 99.51 99.40 99.54 100.00 100.00 99.39 100.00 99.51 98.73 98.45 98.01 99.69 99.38 100.00 98.83 100.00 97.55 99.44 99.58 99.08 99.37 99.47 99.43 99.28 100.00 99.62 100.00 100.00 100.00 99.04 100.00 98.48 98.31 99.73 100.00 99.45 99.24 100.00 100.00 99.77 99.66 100.00 98.11 98.41 99.65 99.53 100.00 99.82 99.50 98.37 98.73 100.00 99.30 100.00 98.80 98.50 98.15 99.84 K jcn_only_AA CG8121,RI_chr3R_5183458_5183705 chr3R + chr3R_5160975_5161221 chr3R_5160975_5161218 chr3R_5160915_5160974;chr3R_5161222_5161357 53.33 NA NA 63.64 NA NA 58.33 NA 53.33 NA NA 39.29 NA NA NA 28.57 NA NA 61.90 52.38 NA NA NA NA NA NA NA NA NA NA 50.00 NA NA 53.85 NA NA NA NA NA 48.48 NA 50.00 NA 48.28 NA 65.52 NA 41.94 57.14 NA NA NA NA NA 58.33 NA NA 66.67 K intron_retention CG1681,I_chrX_13299118_13302688 chrX + chrX_13302608_13302688 chrX_13302607_13302608;chrX_13302688_13302689 chrX_13302321_13302607;chrX_13302689_13302788 2.73 3.17 0.00 2.25 2.61 3.45 3.05 2.99 2.17 0.00 4.26 2.61 0.00 1.89 2.61 1.49 1.04 2.60 1.80 1.15 3.33 5.88 1.42 2.65 2.22 3.20 3.62 6.22 3.85 2.02 2.03 4.35 2.08 1.86 3.37 7.50 1.77 2.56 3.25 4.00 4.12 3.29 3.85 1.79 3.79 4.88 4.46 5.56 1.60 2.73 2.51 2.83 6.15 3.20 1.56 1.45 3.59 7.81 K jcn_only_AA CG12582 chr3R + chr3R_25016_27564 chr3R_25016_25084 chr3R_24727_25015;chr3R_27565_28044 0.95 0.74 1.59 0.38 1.55 0.75 1.45 0.88 0.61 0.00 0.00 0.77 2.11 2.80 1.07 0.68 1.19 3.39 1.01 0.00 1.02 1.35 0.65 0.00 0.00 0.62 1.32 2.67 2.00 1.33 0.00 3.70 2.70 1.56 0.00 0.00 0.66 1.18 0.78 0.49 0.00 0.95 0.00 0.94 1.41 2.38 0.95 1.41 0.58 1.46 1.17 1.50 0.00 1.15 0.47 1.77 0.62 0.00 K alternative_last_exon CG11299,I_chr2R_19619053_19619186 chr2R + chr2R_19619744_19619915 chr2R_19619744_19619803,chr2R_19619744_19619780 chr2R_19619916_19620026 chr2R_19619804_19619903 chr2R_19619560_19619743 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 3.45 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 1.75 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31342,I_chr3R_8813079_8814327,I_chr3R_8822346_8822403 chr3R + chr3R_8815747_8815857 chr3R_8815746_8815747;chr3R_8815857_8815858 chr3R_8814328_8815746;chr3R_8815858_8815999 3.70 3.31 1.97 3.74 0.00 3.20 2.62 4.76 3.73 1.25 3.51 3.43 6.31 3.41 4.58 4.76 3.92 0.70 0.83 3.03 2.94 6.12 4.35 4.20 4.59 3.31 3.70 3.37 3.54 6.96 2.38 5.06 6.48 3.85 5.95 2.61 2.82 3.82 4.71 4.35 5.56 3.36 4.30 4.90 4.00 2.94 4.55 9.52 3.15 3.70 2.56 1.68 2.90 0.00 3.94 1.98 2.44 11.69 K intron_retention CG42321,I_chr2R_9326329_9326436,I_chr2R_9326353_9326436 chr2R - chr2R_9305334_9306491 chr2R_9305333_9305334;chr2R_9306491_9306492 chr2R_9305135_9305333;chr2R_9306492_9306590 47.06 NA 50.00 80.00 NA NA 60.00 41.67 47.06 NA NA 25.00 NA NA NA 31.25 NA NA NA 80.00 NA 26.67 NA 33.33 NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA 50.00 NA 12.50 NA NA NA NA NA NA 21.43 K intron_retention scrib,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22416440_22423368 chr3R_22416439_22416440;chr3R_22423368_22423369 chr3R_22416340_22416439;chr3R_22423369_22423392 16.67 12.50 NA NA NA NA 30.77 41.67 47.06 0.00 NA 27.78 NA NA NA 30.77 NA NA NA 33.33 NA 22.22 21.05 10.00 NA NA NA NA 15.38 18.75 NA NA 12.50 NA NA 5.26 14.29 NA 15.00 16.67 15.38 26.32 NA 12.50 0.00 17.65 NA 21.88 45.45 NA 14.29 NA NA NA NA NA NA 12.00 K alternative_donor Asator chr4 - chr4_495395_495647 chr4_495395_495585 chr4_495385_495394;chr4_495648_495661 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K alternative_donor R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083458_8089184;chr2L_8083522_8089184;chr2L_8083588_8089184;chr2L_8083637_8089184 chr2L_8083687_8089184 chr2L_8089185_8089284;chr2L_8083444_8083457 14.29 27.27 12.50 12.50 37.50 11.11 6.67 6.67 7.69 0.00 28.57 17.78 10.00 12.50 15.00 6.25 11.11 15.79 13.33 13.16 9.09 12.50 11.76 37.50 27.27 21.05 26.67 37.50 15.15 16.67 11.11 7.69 14.29 12.20 15.38 15.00 28.57 33.33 16.67 14.29 9.09 9.09 8.70 6.67 8.33 5.26 14.29 11.54 4.88 28.57 14.29 28.57 28.57 20.00 14.81 20.00 20.00 9.09 K jcn_only_AD lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3963608_3963797 chr2R_3963614_3963797 chr2R_3963798_3963953;chr2R_3963365_3963607 74.71 74.25 70.42 67.53 75.09 73.33 70.97 65.20 76.08 72.04 76.23 76.10 74.48 73.96 75.95 79.90 73.43 78.76 70.72 74.92 74.80 83.27 74.40 74.37 77.36 69.42 73.99 81.09 77.49 74.54 71.55 77.90 75.05 75.97 74.17 73.84 72.85 68.70 73.94 74.80 77.24 77.13 75.27 74.62 77.13 74.82 72.65 76.29 71.97 80.12 75.84 77.65 69.29 71.79 77.19 75.31 74.71 70.16 K alternative_donor Rcp chrX + chrX_16778756_16778896 chrX_16778834_16778896 chrX_16778897_16778939;chrX_16778719_16778755 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 NA 92.86 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 94.12 100.00 96.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 96.77 K intron_retention IP3K2,I_chrX_13216481_13219804 chrX + chrX_13221968_13222183 chrX_13221967_13221968;chrX_13222183_13222184 chrX_13221699_13221967;chrX_13222184_13222294 1.72 0.00 0.00 0.00 0.00 2.35 4.08 4.21 1.52 4.84 0.00 0.76 1.69 3.28 2.97 0.00 0.00 0.00 2.35 0.00 5.00 2.78 3.37 1.00 2.44 2.78 2.78 3.03 2.13 1.98 0.00 0.00 2.60 0.00 2.60 2.63 1.72 0.00 1.54 0.00 0.00 1.05 2.94 0.00 0.00 2.13 2.27 1.82 2.72 1.68 2.73 4.26 2.27 0.00 0.97 0.00 1.72 0.00 K jcn_only_AA CG31782,VhaSFD,RI_chr2L_16731891_16731942 chr2L - chr2L_16723898_16724057 chr2L_16724002_16724057 chr2L_16724058_16724171;chr2L_16723138_16723897 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.68 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 N cassette CG40178,I_chr3LHet_1194286_1226423,I_chr3LHet_1281030_1306994 chr3LHet - chr3LHet_1257084_1315894 chr3LHet_1257084_1306994;chr3LHet_1307156_1315894 chr3LHet_1306995_1307155 chr3LHet_1256867_1257083;chr3LHet_1315895_1316109 33.33 NA NA 33.33 NA NA 22.22 32.14 39.13 NA NA 42.86 NA 22.22 NA 36.84 16.67 NA 25.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 33.33 NA NA NA NA NA NA NA 45.45 NA 30.00 NA NA NA NA 33.33 NA NA NA NA NA NA NA 14.29 NA K alternative_acceptor lt,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22832038_22832092 chr2L_22832038_22832085 chr2L_22831938_22832037;chr2L_22832093_22832154 98.28 100.00 100.00 100.00 100.00 96.43 94.12 100.00 94.59 100.00 100.00 98.31 97.22 96.97 100.00 98.25 94.74 100.00 92.31 98.31 100.00 93.94 100.00 96.30 100.00 96.67 100.00 88.89 NA 100.00 94.00 100.00 93.75 98.61 100.00 95.83 100.00 91.67 100.00 96.97 94.44 98.51 96.77 96.77 100.00 91.18 92.31 96.55 97.47 95.24 92.86 100.00 100.00 100.00 97.37 96.67 100.00 100.00 K jcn_only_AA CG17508,RI_chr2R_1496995_1497120,chr2R_1497138_1497448.0 chr2R + chr2R_1496995_1497120;chr2R_1496995_1497568 chr2R_1496995_1497637 chr2R_1496895_1496994;chr2R_1497638_1497761 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.64 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.79 K intron_retention Nup153,I_chrX_16495232_16495296 chrX + chrX_16502034_16503037 chrX_16502033_16502034;chrX_16503037_16503038 chrX_16501966_16502033;chrX_16503038_16504371 43.56 45.00 34.29 41.67 31.25 37.50 48.39 48.72 39.47 26.32 42.31 45.00 65.00 50.00 51.16 57.58 41.67 43.33 43.48 40.91 55.56 20.78 36.79 44.32 45.28 45.16 50.00 33.90 28.12 36.51 67.86 50.79 35.00 43.40 36.92 36.36 41.10 47.73 44.32 43.56 55.00 37.04 54.17 46.38 31.67 52.25 50.00 33.94 57.41 43.75 43.02 40.54 35.06 57.45 47.06 49.33 50.68 34.82 N jcn_only_AA CG33967 chr3R - chr3R_10528292_10528612 chr3R_10528308_10528612 chr3R_10528613_10528911;chr3R_10526678_10528291 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 45.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_donor CG8531,RI_chr2R_10144869_10144912 chr2R + chr2R_10145224_10145276;chr2R_10145138_10145276 chr2R_10145070_10145276 chr2R_10145277_10145393;chr2R_10144926_10145069 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.97 8.26 6.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Cdk4,RI_chr2R_12471503_12471656 chr2R + chr2R_12467432_12468346;chr2R_12467241_12468346;chr2R_12467275_12468346;chr2R_12467474_12468346;chr2R_12467225_12468346;chr2R_12467227_12468346;chr2R_12467261_12468346;chr2R_12467039_12468346 chr2R_12467202_12468346 chr2R_12468347_12468520;chr2R_12467030_12467038 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.92 0.00 4.55 0.00 0.00 0.00 3.23 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 3.17 NA NA 0.00 0.00 NA NA 0.00 0.00 3.85 4.76 NA NA 0.00 0.00 0.00 0.00 K alternative_acceptor CSN3 chr3L - chr3L_20832430_20832497 chr3L_20832441_20832497 chr3L_20832498_20832565;chr3L_20832133_20832429 100.00 100.00 95.83 100.00 100.00 100.00 97.92 100.00 100.00 95.83 100.00 97.44 100.00 100.00 96.97 100.00 100.00 96.00 100.00 100.00 95.65 97.14 100.00 97.56 96.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 96.97 100.00 100.00 100.00 100.00 100.00 98.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG5514,RI_chr3R_23768206_23768306,Gp93 chr3R + chr3R_23767860_23768309;chr3R_23768206_23768309 chr3R_23767856_23768309 chr3R_23768310_23768406 98.53 100.00 98.04 100.00 96.55 97.67 95.74 100.00 98.99 96.00 100.00 98.61 100.00 100.00 97.56 100.00 100.00 97.83 97.96 96.08 93.55 NA 96.55 100.00 100.00 100.00 98.18 96.00 97.92 100.00 100.00 98.08 98.53 98.39 95.56 100.00 100.00 96.97 97.17 98.88 98.53 98.85 100.00 90.24 95.51 97.53 97.94 100.00 95.65 100.00 98.63 NA 97.40 98.75 98.08 98.18 99.04 100.00 K intron_retention CG4552,I_chr2L_1129503_1129818 chr2L + chr2L_1129506_1129818 chr2L_1129505_1129506;chr2L_1129818_1129819 chr2L_1129224_1129505;chr2L_1129819_1129918 0.00 1.96 0.00 0.94 0.00 0.00 2.46 1.27 1.18 0.00 0.00 2.60 0.00 1.59 3.03 0.00 0.00 2.44 1.98 0.86 1.32 1.98 1.69 0.00 0.00 0.92 1.79 2.53 0.00 0.00 0.00 0.00 0.97 2.31 0.00 0.00 0.00 0.00 2.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 3.12 1.44 2.00 0.00 1.19 1.92 0.00 0.00 0.00 K jcn_only_AA CG2004,I_chrX_8608130_8608508,RI_chrX_8608147_8608508,I_chrX_8608169_8608438 chrX - chrX_8608130_8608508;chrX_8608147_8608508;chrX_8608150_8608508 chrX_8608169_8608508 chrX_8608509_8608538;chrX_8608069_8608129 95.45 95.45 97.14 100.00 90.74 96.08 78.48 95.60 94.70 89.58 97.87 95.31 98.55 90.77 89.71 94.78 95.45 96.72 94.52 97.37 95.24 95.08 95.06 92.13 98.25 98.68 93.94 92.68 88.68 92.16 96.15 94.74 92.19 94.95 96.10 100.00 98.53 92.00 96.39 98.11 96.67 95.16 94.64 100.00 95.59 96.74 98.53 94.44 96.69 98.18 96.70 95.45 94.12 98.11 94.51 96.97 95.51 96.97 K intron_retention Pen chr2L + chr2L_10057205_10057621 chr2L_10057204_10057205;chr2L_10057621_10057622 chr2L_10056915_10057204;chr2L_10057622_10057759 0.00 0.00 0.00 0.00 0.00 3.12 3.08 1.96 0.00 NA 0.00 2.15 0.00 0.00 0.00 4.76 0.00 0.00 1.47 2.63 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 2.08 3.28 0.00 NA 0.00 NA 6.06 3.53 NA 0.00 0.00 NA NA 0.00 NA NA 3.85 K alternative_donor RI_chr4_1144958_1145393,CG11155,I_chr4_1152220_1152710,I_chr4_1152585_1152687 chr4 + chr4_1147564_1147627 chr4_1147568_1147627 chr4_1147628_1147833;chr4_1147545_1147563 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 90.00 NA 90.91 NA 100.00 NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA bigmax,E_chr3R_23113334_23113889 chr3R - chr3R_23113436_23113506 chr3R_23113442_23113506 chr3R_23113507_23113569;chr3R_23113087_23113435 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 99.12 100.00 100.00 100.00 100.00 100.00 99.19 100.00 98.75 100.00 100.00 100.00 100.00 100.00 100.00 99.04 100.00 K intron_retention CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,RI_chr2L_126228_126309 chr2L - chr2L_117776_117819 chr2L_117775_117776;chr2L_117819_117820 chr2L_117096_117775;chr2L_117820_117887 30.95 NA NA 40.00 NA NA 33.33 NA 33.33 NA NA NA NA NA NA 21.43 NA NA NA 22.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 28.57 NA 25.00 NA NA NA NA 42.11 NA NA NA NA NA NA NA NA NA K intron_retention I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545986_17546044 chr2R_17545985_17545986;chr2R_17546044_17546045 chr2R_17545856_17545985;chr2R_17546045_17546284 0.00 0.00 1.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.36 0.00 2.38 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.28 0.00 0.00 0.55 0.00 0.67 0.34 0.00 K alternative_last_exon yuri,F_chr2L_15260838_15261717 chr2L - chr2L_15258939_15261717 chr2L_15261638_15261717 chr2L_15258782_15258938 chr2L_15261159_15261637 chr2L_15261718_15261817 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.00 100.00 99.34 98.85 100.00 100.00 98.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.29 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette Sap47 chr3R + chr3R_11780928_11785041 chr3R_11780928_11781711;chr3R_11782030_11785041 chr3R_11781712_11782029 chr3R_11780809_11780927;chr3R_11785042_11785141 97.87 95.83 97.78 97.30 96.88 100.00 100.00 98.39 98.77 100.00 100.00 100.00 95.65 97.30 97.96 100.00 97.06 100.00 97.62 100.00 100.00 98.33 98.21 96.97 96.88 96.88 93.62 94.12 90.91 97.30 98.21 96.00 100.00 100.00 96.97 97.87 94.29 100.00 100.00 93.44 100.00 100.00 100.00 98.04 96.67 96.15 96.83 96.55 98.55 96.97 100.00 97.30 97.30 100.00 100.00 97.62 100.00 97.44 K intron_retention CG17337,REI_chr2R_1585514_1586790,I_chr2R_1585514_1586919,RI_chr2R_1586737_1586790 chr2R + chr2R_1585514_1585960 chr2R_1585513_1585514;chr2R_1585960_1585961 chr2R_1585414_1585513;chr2R_1585961_1586729 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG40351 chr3LHet + chr3LHet_594526_594756;chr3LHet_594526_594765 chr3LHet_594526_594779 chr3LHet_594511_594525;chr3LHet_594780_595060 4.54 NA NA 0.00 NA NA NA NA 9.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA mod(mdg4),EI_chr3R_17202755_17203009,REI_chr3R_17202848_17203009,EI_chr3R_17202924_17203009 chr3R - chr3R_17202799_17203009 chr3R_17202924_17203009 chr3R_17203010_17203090;chr3R_17202748_17202798 0.00 0.00 0.00 2.25 3.33 0.00 0.00 1.14 0.00 0.00 0.00 0.73 0.00 0.00 1.54 0.00 1.72 0.00 1.59 0.61 0.00 0.00 0.00 2.68 3.85 0.00 1.71 2.86 0.00 0.00 1.22 1.67 2.22 1.10 1.47 0.00 0.00 1.01 0.00 0.00 0.00 2.08 6.38 0.89 0.00 2.35 0.00 0.00 1.44 0.90 2.91 1.31 0.00 0.00 0.00 0.81 0.00 0.00 K mutually_exclusive CG3209,I_chr2R_19957751_19959513,RI_chr2R_19957766_19960227,I_chr2R_19959163_19959513 chr2R + chr2R_19957766_19959513,chr2R_19959748_19960227 chr2R_19957766_19958290,chr2R_19958528_19960227 chr2R_19959514_19959747 chr2R_19958291_19958527 chr2R_19957666_19957765;chr2R_19960228_19960327 6.25 3.12 5.00 11.54 4.55 9.09 16.67 12.82 7.14 5.56 5.71 14.86 30.00 9.52 6.67 5.88 6.25 1.18 7.14 9.17 1.96 18.18 5.17 4.92 6.45 5.13 9.52 6.45 3.70 7.69 6.82 3.33 2.56 8.70 8.70 4.65 3.51 8.11 3.51 5.08 6.25 5.88 10.53 6.38 2.22 4.08 5.13 6.25 8.70 7.14 9.30 10.53 2.70 5.41 8.57 5.41 5.56 4.35 K alternative_donor vib,RI_chr3R_15051793_15051920,RI_chr3R_15051793_15052186 chr3R - chr3R_15051793_15051920;chr3R_15051793_15052202 chr3R_15051793_15052186 chr3R_15051737_15051792;chr3R_15052203_15052286 1.56 0.91 1.56 0.81 0.00 0.00 2.15 2.17 0.58 0.00 1.33 2.42 2.90 1.20 1.53 1.92 0.00 0.00 1.94 2.07 1.11 2.86 1.42 3.52 4.76 0.87 1.95 3.57 2.82 0.98 0.92 1.25 0.00 1.33 1.03 3.80 3.16 1.16 2.91 1.20 3.39 0.00 0.00 2.04 3.37 0.70 1.45 2.17 1.89 2.54 1.79 0.00 2.52 0.94 1.57 1.74 1.59 2.27 K intron_retention RhoGAP93B chr3R - chr3R_16913770_16913837 chr3R_16913769_16913770;chr3R_16913837_16913838 chr3R_16913598_16913769;chr3R_16913838_16913917 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 4.35 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA NA K intron_retention CG8229,CG33199 chr2R - chr2R_4836447_4838210 chr2R_4836446_4836447;chr2R_4838210_4838211 chr2R_4835619_4836446;chr2R_4838211_4838296 39.92 37.40 33.33 39.71 39.39 34.33 57.58 37.91 43.80 36.79 61.54 38.46 33.01 38.38 41.61 45.60 40.82 53.70 39.82 34.32 51.69 61.62 41.14 39.74 32.95 46.43 47.18 48.94 63.33 45.16 44.35 37.21 42.59 37.17 29.59 47.56 40.24 37.07 30.68 30.30 59.70 39.92 42.11 40.14 36.36 33.12 39.74 42.54 36.49 40.54 34.97 44.35 34.65 35.04 43.90 36.59 48.68 42.03 K intron_retention ca,CG7802 chr3R + chr3R_25638721_25638782 chr3R_25638720_25638721;chr3R_25638782_25638783 chr3R_25638268_25638720;chr3R_25638783_25640872 0.00 0.00 0.00 3.70 0.00 0.00 3.70 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 3.88 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ND75,I_chrX_8145422_8145478,RI_chrX_8145422_8145584,I_chrX_8145422_8145862 chrX - chrX_8145422_8145629 chrX_8145421_8145422;chrX_8145629_8145630 chrX_8145322_8145421;chrX_8145630_8145684 4.26 5.45 2.11 4.67 4.08 0.00 11.29 2.48 2.54 8.11 2.70 4.32 2.90 2.44 3.88 3.57 1.22 4.12 1.90 3.89 2.20 3.77 7.02 5.00 13.04 4.46 6.25 2.04 6.06 6.67 2.22 5.26 5.56 3.97 7.89 9.30 12.96 2.70 7.84 5.56 11.90 2.91 3.61 4.17 4.11 6.98 7.69 4.65 2.98 10.53 7.14 4.65 2.17 6.90 3.64 4.26 7.35 3.57 K jcn_only_AA CG12582 chr3R + chr3R_23594_23930;chr3R_23594_23942 chr3R_23594_23980 chr3R_23459_23593;chr3R_23981_24494 95.03 97.77 94.13 94.13 94.95 96.75 85.28 97.24 96.03 95.59 96.91 94.86 96.04 96.38 96.95 94.89 93.75 94.97 96.38 95.54 95.03 93.85 95.20 94.06 90.36 94.51 95.51 96.11 86.47 94.86 85.67 96.43 92.71 95.54 92.68 94.86 93.43 95.92 94.84 93.85 94.07 97.46 96.23 95.34 92.00 95.16 95.73 90.32 95.21 93.13 96.05 92.61 97.22 94.27 96.79 95.02 95.91 96.15 K jcn_only_AA CG3419 chr2R + chr2R_20301935_20301994;chr2R_20301935_20301990 chr2R_20301935_20302017 chr2R_20299701_20301934;chr2R_20302018_20302306 73.91 NA NA NA NA NA NA 79.17 72.00 NA NA 73.91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor Pi3K21B,I_chr2L_301774_302025,I_chr2L_301945_302025 chr2L + chr2L_301774_302025;chr2L_299919_302025 chr2L_301945_302025 chr2L_302026_302125;chr2L_299033_299918 0.00 0.00 0.00 1.37 0.00 0.00 1.61 1.32 0.00 0.00 0.00 1.11 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 1.72 3.28 2.44 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention noncoding_11291,CG7375 chr3L - chr3L_8188794_8188924 chr3L_8188793_8188794;chr3L_8188924_8188925 chr3L_8188595_8188793;chr3L_8188925_8189131 100.00 NA NA 100.00 NA NA 92.31 100.00 92.86 NA NA 100.00 NA 100.00 NA 94.44 NA NA 100.00 100.00 NA 91.67 88.89 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA NA 90.00 90.91 NA 100.00 91.67 88.89 100.00 NA NA 100.00 100.00 100.00 100.00 K cassette CG1399,I_chr2R_3574133_3574191 chr2R - chr2R_3571806_3572478 chr2R_3571806_3572226;chr2R_3572269_3572478 chr2R_3572227_3572268 chr2R_3571618_3571805;chr2R_3572479_3572576 0.00 4.55 0.00 0.00 4.76 0.00 3.23 3.45 2.22 0.00 0.00 10.81 NA 0.00 0.00 3.03 0.00 NA 10.53 3.03 0.00 2.38 0.00 0.00 0.00 0.00 2.86 NA NA 0.00 0.00 NA 0.00 2.94 0.00 0.00 2.56 0.00 0.00 0.00 0.00 2.44 NA 0.00 NA 0.00 0.00 0.00 2.78 0.00 0.00 0.00 NA NA 0.00 NA NA NA K alternative_acceptor CG1021,I_chr3R_2217711_2231099,I_chr3R_2217711_2231390,RI_chr3R_2217711_2231463,I_chr3R_2217742_2218601,I_chr3R_2217742_2219453,I_chr3R_2218465_2231390,RI_chr3R_2218465_2231463,I_chr3R_2218682_2231463,I_chr3R_2219634_2231390,I_chr3R_2231383_2231463 chr3R - chr3R_2218465_2218601;chr3R_2217742_2218601 chr3R_2217711_2218601 chr3R_2218602_2218681;chr3R_2217642_2217710 62.79 72.22 76.47 51.52 63.64 69.23 35.29 61.54 58.97 56.25 72.22 60.53 51.85 46.67 65.52 58.33 53.33 68.42 60.00 58.33 81.82 48.08 73.68 78.05 66.67 57.14 60.87 60.71 47.37 58.82 41.67 87.50 81.48 62.79 60.00 63.64 60.61 84.62 76.19 68.75 53.85 60.61 64.71 68.75 61.11 61.54 75.00 57.14 58.82 72.34 77.42 78.95 81.08 80.00 69.57 70.59 80.77 56.00 K alternative_donor CG40228,noncoding_14406,RI_chr3LHet_2190419_2190470 chr3LHet - chr3LHet_2190419_2190556;chr3LHet_2190419_2190563;chr3LHet_2190419_2190548;chr3LHet_2190419_2190561 chr3LHet_2190419_2190470 chr3LHet_2190319_2190418;chr3LHet_2190564_2190570 6.59 8.33 6.06 7.89 10.00 7.14 26.87 9.41 10.42 NA 9.09 6.35 9.38 4.44 3.57 3.85 7.14 0.00 6.52 7.35 0.00 0.00 4.17 7.14 11.11 2.94 5.71 0.00 4.55 6.67 2.27 7.69 0.00 7.41 6.98 5.88 7.69 0.00 4.76 11.63 9.62 5.88 2.94 10.00 5.71 4.82 8.57 6.98 5.71 7.14 8.51 16.67 3.85 6.67 5.26 7.32 6.25 6.25 K cassette Mbs,I_chr3L_16045251_16046108,I_chr3L_16057100_16057329 chr3L + chr3L_16059930_16063219 chr3L_16059930_16061212;chr3L_16062044_16063219 chr3L_16061213_16062043 chr3L_16059713_16059929;chr3L_16063220_16063364 64.33 68.46 54.29 81.19 70.59 65.62 48.72 38.14 62.59 44.00 44.86 60.70 36.46 65.98 65.65 60.51 65.62 51.06 69.07 50.27 47.52 47.49 69.16 68.93 73.77 51.02 55.88 47.33 58.60 70.05 78.07 63.33 65.96 61.00 64.66 67.21 68.73 72.48 64.32 52.11 68.75 61.15 67.82 68.00 47.20 68.97 57.14 61.56 64.00 60.68 64.33 68.09 76.26 67.86 65.60 64.04 68.42 75.56 N jcn_only_AA CG31751,RI_chr2L_18677311_18677391,RI_chr2L_18677473_18677932 chr2L + chr2L_18677473_18682264;chr2L_18677473_18678838 chr2L_18677473_18677932 chr2L_18677392_18677472 4.36 NA NA 0.00 NA NA NA NA 0.00 NA 8.33 4.76 NA NA NA NA NA NA NA 4.55 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.68 NA NA NA NA NA NA 4.17 NA NA NA NA NA 0.00 NA NA 12.00 K alternative_acceptor I_chrX_1757755_1757801,CG14817,I_chrX_1770939_1771001,RI_chrX_1770945_1771037,RI_chrX_1773382_1773444,trr,I_chrX_1793073_1794406,RI_chrX_1795648_1795745 chrX - chrX_1770939_1771001 chrX_1770945_1771001 chrX_1771002_1771101;chrX_1770845_1770938 100.00 98.66 98.85 98.91 100.00 100.00 100.00 98.98 100.00 100.00 100.00 100.00 98.53 100.00 100.00 100.00 100.00 100.00 100.00 99.54 98.84 100.00 99.21 99.39 100.00 100.00 99.32 98.44 98.84 100.00 100.00 100.00 100.00 100.00 98.68 100.00 100.00 100.00 99.53 99.26 98.86 99.35 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.44 99.36 100.00 100.00 100.00 98.97 99.06 K jcn_only_AD CG4078,I_chrX_5644813_5644881,I_chrX_5645012_5645067,F_chrX_5650884_5651894 chrX + chrX_5644638_5644881 chrX_5644813_5644881 chrX_5644882_5644981;chrX_5644495_5644637 4.17 NA NA NA NA NA NA NA 4.17 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 9.09 NA NA K intron_retention CG7702,CG31230 chr3R + chr3R_14497097_14498543 chr3R_14497096_14497097;chr3R_14498543_14498544 chr3R_14496860_14497096;chr3R_14498544_14500401 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8531,RI_chr2R_10144869_10144912 chr2R + chr2R_10144869_10144925 chr2R_10144868_10144869;chr2R_10144925_10144926 chr2R_10144769_10144868;chr2R_10144926_10145012 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 1.53 0.00 0.00 0.00 3.87 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pp2A-29B,I_chr2L_8367210_8367311,I_chr2L_8369561_8369715 chr2L + chr2L_8367872_8367930 chr2L_8367871_8367872;chr2L_8367930_8367931 chr2L_8367797_8367871;chr2L_8367931_8368696 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 2.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14253 chr3R + chr3R_22809940_22809997 chr3R_22809939_22809940;chr3R_22809997_22809998 chr3R_22809685_22809939;chr3R_22809998_22810156 0.00 0.00 0.45 0.28 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.68 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.30 0.47 0.00 0.00 0.20 0.00 0.00 0.00 K intron_retention CG8839,I_chr2R_8229288_8229488,I_chr2R_8229288_8231538 chr2R - chr2R_8229288_8231968 chr2R_8229287_8229288;chr2R_8231968_8231969 chr2R_8229188_8229287;chr2R_8231969_8232118 6.20 NA NA 0.00 NA NA NA NA 14.29 NA NA 14.29 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 11.11 NA NA NA NA NA NA NA 0.00 7.14 NA NA NA NA NA 8.70 NA NA NA NA NA NA NA NA 5.26 N jcn_only_AD CG17233,RI_chr3L_20232898_20232962 chr3L - chr3L_20233633_20234944;chr3L_20233633_20234418;chr3L_20233633_20234374 chr3L_20233633_20234218 chr3L_20232963_20233632;chr3L_20234945_20234989 6.58 10.34 16.13 8.33 4.55 16.13 9.76 21.31 4.35 6.67 5.00 10.00 2.50 10.71 7.14 13.64 7.14 0.00 9.68 7.27 4.17 29.73 6.67 9.38 6.06 3.70 0.00 18.18 4.44 0.00 2.33 7.50 5.48 9.84 14.29 4.88 6.25 3.12 5.41 6.45 1.79 6.58 0.00 2.94 10.71 2.22 0.00 2.17 17.11 13.04 10.53 NA 6.25 NA 2.70 16.13 17.39 1.85 N jcn_only_AA unc-5,E_chr2R_11238100_11240757,I_chr2R_11252444_11252570 chr2R + chr2R_11246255_11247919 chr2R_11246255_11247482 chr2R_11246084_11246254;chr2R_11247920_11247973 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 K alternative_donor CG42568,RI_chr2R_20046540_20046671,RI_chr2R_20046609_20046675,RI_chr2R_20046743_20046821 chr2R - chr2R_20046609_20046675;chr2R_20046609_20046667 chr2R_20046609_20046671 chr2R_20046509_20046608;chr2R_20046676_20046742 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention foi,I_chr3L_8520658_8520733,I_chr3L_8524905_8524976 chr3L + chr3L_8518490_8523659 chr3L_8518489_8518490;chr3L_8523659_8523660 chr3L_8518407_8518489;chr3L_8523660_8524249 90.23 94.44 89.47 88.16 92.68 92.73 98.39 93.51 93.20 88.52 88.64 98.72 94.59 93.75 89.47 90.00 88.37 93.88 93.48 86.73 89.74 86.14 87.01 90.48 87.50 97.83 94.64 88.31 86.87 90.14 89.47 91.67 90.23 90.79 93.85 90.14 88.00 93.62 96.55 92.17 88.73 93.55 89.47 88.31 88.14 91.55 75.61 93.75 95.18 84.85 93.85 94.74 92.00 80.00 89.83 90.00 81.82 90.82 K alternative_acceptor cv-c,RI_chr3R_10258928_10265129,RI_chr3R_10301040_10306363,noncoding_16722,RI_chr3R_10306635_10307255 chr3R - chr3R_10306459_10307301 chr3R_10306635_10307301 chr3R_10307302_10307304;chr3R_10306434_10306458 88.89 88.89 80.00 71.43 NA NA 100.00 95.00 96.55 100.00 100.00 93.75 87.50 94.12 NA 93.33 83.33 100.00 90.91 83.33 NA 60.00 75.00 NA NA NA NA NA 83.33 83.33 87.50 NA NA 80.00 NA 100.00 NA NA NA 100.00 NA 81.82 87.50 100.00 NA 80.00 NA 88.89 94.74 NA 87.50 100.00 NA NA 100.00 NA NA NA K intron_retention CG16791 chr3R - chr3R_17148070_17148142 chr3R_17148069_17148070;chr3R_17148142_17148143 chr3R_17147895_17148069;chr3R_17148143_17148288 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.15 0.00 0.00 0.00 0.00 2.94 5.56 20.37 1.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 1.23 3.85 2.53 2.44 0.00 0.00 1.65 1.77 0.00 2.55 0.00 0.00 0.00 3.45 1.33 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CdGAPr chr2L - chr2L_19782826_19791763 chr2L_19791342_19791763 chr2L_19791764_19791863 11.37 14.29 16.33 14.58 5.00 11.90 7.69 14.93 12.99 8.16 13.64 29.67 10.00 11.90 7.50 8.51 14.29 12.20 25.71 15.93 11.76 16.46 8.11 10.71 6.12 9.76 16.07 20.83 10.94 12.20 9.41 8.82 8.86 14.86 6.78 18.18 10.53 13.46 6.52 16.13 6.45 12.86 13.33 10.98 8.33 10.91 10.34 13.08 8.97 7.69 8.05 12.82 16.00 5.00 2.94 NA 8.70 15.00 K intron_retention Abl,I_chr3L_16622304_16639909,RI_chr3L_16652567_16654512 chr3L - chr3L_16622307_16639909 chr3L_16622306_16622307;chr3L_16639909_16639910 chr3L_16621763_16622306;chr3L_16639910_16640009 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG3045,RI_chr2R_18061765_18061839,RI_chr2R_18066002_18070327 chr2R - chr2R_18061765_18061839 chr2R_18061765_18061820 chr2R_18061696_18061764;chr2R_18061840_18061884 90.91 NA 100.00 90.91 100.00 100.00 86.67 96.15 95.83 NA 100.00 91.30 90.91 90.91 88.89 94.74 100.00 90.91 87.50 96.55 87.50 90.91 84.62 91.67 NA 92.31 100.00 85.71 75.00 90.91 64.00 90.91 80.00 95.45 100.00 63.64 NA 85.71 92.86 92.00 84.62 85.00 91.67 100.00 90.00 92.31 100.00 84.00 100.00 90.91 85.71 NA 100.00 NA 100.00 NA 87.50 86.67 K jcn_only_AA Hyperkinetic,I_chrX_10148341_10149525,I_chrX_10152994_10153223 chrX - chrX_10135052_10135146 chrX_10135055_10135146 chrX_10135147_10135201;chrX_10134987_10135051 84.69 97.06 91.30 89.47 80.00 NA 87.85 83.64 85.42 93.22 NA 73.33 NA NA 72.00 82.61 NA NA NA 91.07 NA 88.14 82.86 82.50 92.11 80.77 87.18 93.55 75.76 80.00 88.57 NA 81.82 86.84 69.57 80.65 85.37 82.05 92.42 90.74 81.82 90.00 NA 86.67 86.21 74.19 85.71 71.79 81.82 83.87 77.19 86.96 NA 84.00 93.75 70.00 76.92 85.71 K intron_retention Bet1,noncoding_13463 chr3L + chr3L_19254708_19254812 chr3L_19254707_19254708;chr3L_19254812_19254813 chr3L_19254489_19254707;chr3L_19254813_19255421 9.09 4.35 5.56 14.29 5.41 10.00 13.04 15.69 7.89 8.33 6.25 8.22 9.09 11.76 11.32 14.81 9.38 13.89 12.12 13.08 10.26 8.54 4.00 6.85 5.26 9.26 8.47 5.88 7.14 16.28 8.89 7.81 18.92 8.93 12.50 9.80 7.27 3.92 7.46 9.28 16.98 10.39 16.67 7.27 9.52 13.04 10.71 18.33 11.69 6.85 8.06 7.69 0.00 8.77 10.91 8.93 3.17 12.86 K jcn_only_AA CG14995,I_chr3L_4095875_4097205,I_chr3L_4096047_4096903 chr3L - chr3L_4095123_4095199 chr3L_4095147_4095199 chr3L_4095200_4095293;chr3L_4094504_4095122 5.00 0.00 NA NA NA NA 0.00 3.45 11.54 NA NA 2.94 0.00 NA NA 4.35 NA NA NA 5.00 NA 5.26 0.00 7.14 NA NA 5.00 NA 7.41 5.00 4.35 18.18 2.44 9.38 NA NA 4.17 NA NA 11.11 4.76 6.67 NA 10.81 7.32 6.00 7.14 5.26 6.67 4.00 4.00 0.00 NA 12.00 8.00 0.00 22.22 5.00 K jcn_only_AA CG1308,CG1295 chr3L + chr3L_4195388_4195595 chr3L_4195388_4195589 chr3L_4195360_4195387;chr3L_4195596_4195715 80.00 NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG5514,RI_chr3R_23768206_23768306,Gp93 chr3R + chr3R_23767856_23768306;chr3R_23767856_23768309 chr3R_23767856_23768156 chr3R_23765429_23767855;chr3R_23768310_23768406 14.68 8.06 3.70 5.17 17.95 21.31 3.85 11.70 14.62 14.29 11.90 23.58 9.76 14.89 15.79 10.00 27.78 12.28 15.87 8.53 15.79 41.67 10.96 10.53 11.86 18.97 18.42 44.90 22.39 15.56 11.29 20.25 17.89 10.39 14.75 28.30 12.35 21.74 16.90 17.07 13.68 12.93 13.95 25.45 22.58 14.68 9.32 18.92 15.22 9.52 17.14 NA 7.95 9.43 16.90 14.67 7.46 4.60 K intron_retention CG5708 chr2L - chr2L_10224893_10224957 chr2L_10224892_10224893;chr2L_10224957_10224958 chr2L_10224655_10224892;chr2L_10224958_10225149 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 1.03 2.38 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG34133,F_chr3R_25696884_25696960 chr3R + chr3R_25695777_25696960 chr3R_25695777_25696781;chr3R_25696872_25696960 chr3R_25696782_25696871 chr3R_25695572_25695776;chr3R_25696961_25697060 73.21 69.44 64.71 60.00 71.79 65.00 46.43 87.93 75.90 63.33 78.57 70.15 89.74 75.68 77.08 73.21 88.89 68.57 88.89 70.65 76.47 58.33 74.07 80.95 78.57 68.89 78.43 79.31 35.48 65.12 67.39 86.67 69.77 73.61 71.88 50.00 73.33 86.67 71.15 71.62 60.00 77.78 86.21 81.25 70.00 74.07 92.00 70.45 77.33 76.67 72.34 72.22 85.00 91.67 79.66 65.38 65.00 70.37 K alternative_acceptor CG6762,I_chrX_17751392_17751499,I_chrX_17751392_17751520 chrX + chrX_17751392_17751505;chrX_17751392_17751524 chrX_17751392_17751535 chrX_17751292_17751391;chrX_17751536_17751560 18.75 12.50 18.75 18.75 7.14 25.00 11.54 6.25 23.33 12.50 22.22 15.38 12.50 37.50 30.77 35.00 20.00 20.00 28.57 14.29 9.09 11.11 9.09 25.00 0.00 0.00 35.71 12.50 12.50 0.00 5.88 14.29 31.82 25.00 22.22 0.00 7.69 27.27 23.53 14.81 14.29 25.00 37.50 18.18 26.67 28.00 30.77 30.00 14.81 26.67 30.77 44.44 29.41 6.67 7.69 7.69 21.05 33.33 K jcn_only_AA Aats-lys chrX - chrX_9502326_9502751 chrX_9502689_9502751 chrX_9502752_9502885 4.20 3.08 4.31 3.31 1.85 4.26 4.93 0.00 3.56 2.94 1.85 2.88 4.04 1.96 4.00 3.62 4.21 3.60 2.80 1.85 3.39 11.11 4.23 6.54 6.54 1.67 4.83 2.04 5.26 4.33 10.53 12.50 6.81 2.68 5.13 7.91 3.81 5.62 2.90 3.73 4.52 7.32 6.73 5.39 4.91 10.53 2.50 10.41 4.37 3.20 4.95 4.20 2.70 4.66 3.12 2.05 1.89 6.61 N jcn_only_AA CG3287,I_chr2R_2700203_2700285 chr2R + chr2R_2701259_2702564 chr2R_2701259_2701541 chr2R_2700678_2701258;chr2R_2702565_2703029 69.85 68.87 63.89 76.16 68.13 72.39 66.19 69.54 66.13 74.19 82.24 72.87 78.57 56.70 62.86 63.69 65.93 68.99 68.57 64.36 78.12 66.32 55.43 61.98 62.24 61.98 60.00 80.00 69.85 79.01 71.32 92.00 83.50 74.35 75.44 75.19 61.90 56.44 56.56 80.85 88.83 61.16 62.75 77.25 89.51 86.94 75.47 83.78 65.45 72.36 63.06 63.55 71.23 68.75 70.08 77.52 76.47 93.75 K intron_retention CG1021,I_chr3R_2217711_2231099,I_chr3R_2217711_2231390,RI_chr3R_2217711_2231463,I_chr3R_2217742_2218601,I_chr3R_2217742_2219453,I_chr3R_2218465_2231390,RI_chr3R_2218465_2231463,I_chr3R_2218682_2231463,I_chr3R_2219634_2231390,RI_chr3R_2231206_2231270,I_chr3R_2231271_2231390,I_chr3R_2231285_2231463,I_chr3R_2231383_2231463 chr3R - chr3R_2217711_2231463 chr3R_2217710_2217711;chr3R_2231463_2231464 chr3R_2217642_2217710;chr3R_2231464_2231490 84.00 88.89 94.12 100.00 87.50 100.00 80.00 100.00 89.29 76.47 90.00 93.33 88.00 94.44 94.74 87.50 100.00 90.91 94.12 81.58 90.91 83.05 88.89 94.74 86.96 80.00 68.00 68.97 72.00 84.00 93.75 70.00 65.52 86.21 81.82 96.67 69.70 77.78 81.82 78.43 79.31 80.56 90.00 75.76 71.43 75.00 80.00 84.00 86.67 84.00 90.91 100.00 77.14 73.33 77.27 93.75 76.67 80.85 K intron_retention I_chrX_19573364_19573474,Mer,E_chrX_19584965_19587100,CG14229 chrX - chrX_19585968_19586064 chrX_19585967_19585968;chrX_19586064_19586065 chrX_19585731_19585967;chrX_19586065_19586274 0.00 2.56 0.00 2.17 0.00 0.00 6.90 6.12 2.78 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.76 3.45 0.00 2.90 1.47 2.00 0.00 0.00 3.92 5.26 0.00 0.00 0.00 0.00 0.00 2.27 0.00 2.50 7.84 0.00 0.00 3.30 2.33 3.57 3.70 0.00 0.00 2.08 3.17 0.00 1.54 0.00 3.92 0.00 0.00 0.00 3.23 0.00 0.00 3.92 K alternative_donor Cdk4,RI_chr2R_12471503_12471656 chr2R + chr2R_12467202_12468346;chr2R_12467432_12468346;chr2R_12467241_12468346;chr2R_12467275_12468346;chr2R_12467474_12468346;chr2R_12467227_12468346;chr2R_12467261_12468346;chr2R_12467039_12468346 chr2R_12467225_12468346 chr2R_12468347_12468520;chr2R_12467030_12467038 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon klar,noncoding_9693,I_chr3L_462559_472609,RI_chr3L_517594_539898 chr3L - chr3L_436850_440493 chr3L_437977_440493 chr3L_436222_436849 chr3L_437901_437976 chr3L_440494_441091 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD pr-set7 chr3R + chr3R_10142094_10142198;chr3R_10142103_10142198 chr3R_10142132_10142198 chr3R_10142199_10142589;chr3R_10142068_10142093 8.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.33 NA NA NA NA NA NA NA NA NA NA K cassette CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_154340_155497 chr4_154340_154420;chr4_154551_155497 chr4_154421_154550 chr4_154254_154339;chr4_155498_155561 95.24 100.00 100.00 80.00 100.00 87.50 92.31 91.30 100.00 NA NA 88.24 100.00 92.86 NA 100.00 90.91 88.89 88.89 100.00 83.33 NA 85.71 100.00 NA NA NA NA NA 100.00 100.00 NA NA 95.24 NA NA NA NA NA 100.00 NA 88.89 81.82 80.00 NA 100.00 NA 100.00 95.24 83.33 100.00 85.71 NA 100.00 NA NA 100.00 66.67 K intron_retention CG5854,RI_chr3R_19760655_19760703 chr3R + chr3R_19761020_19761085 chr3R_19761019_19761020;chr3R_19761085_19761086 chr3R_19760751_19761019;chr3R_19761086_19761686 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9339,RE_chr2L_20903555_20916904,I_chr2L_20903560_20918638,I_chr2L_20922613_20922685 chr2L - chr2L_20917121_20918798 chr2L_20917120_20917121;chr2L_20918798_20918799 chr2L_20916905_20917120;chr2L_20918799_20918888 57.14 61.11 55.56 63.64 63.64 54.55 54.17 71.88 56.10 NA 57.14 57.14 45.45 47.83 63.16 50.00 83.33 71.43 63.89 39.47 NA 50.00 40.00 75.00 NA 71.43 73.33 NA 50.00 57.14 57.69 54.55 61.11 65.62 58.82 65.00 42.86 NA NA 53.85 NA 64.00 78.95 58.33 NA 47.06 NA 66.67 70.00 NA 57.14 45.00 45.45 57.14 88.24 54.55 NA 41.67 K alternative_acceptor CG5060,RI_chr3R_16115918_16116080 chr3R + chr3R_16115918_16116092 chr3R_16115918_16116080 chr3R_16115818_16115917;chr3R_16116093_16116180 13.85 13.85 13.64 16.95 10.91 11.59 13.85 13.10 14.15 14.06 11.90 13.64 22.73 21.28 7.23 16.92 14.81 15.87 14.81 15.04 9.09 15.00 14.56 8.91 12.07 21.21 11.84 28.00 11.83 18.57 11.84 13.79 15.52 14.81 22.22 19.35 15.57 13.79 11.36 8.08 15.38 12.59 10.00 14.44 13.16 16.33 14.29 11.11 14.53 15.56 10.34 15.00 14.81 8.33 10.13 13.79 4.35 11.94 N alternative_donor CG7033 chrX + chrX_8984654_8986142 chrX_8986071_8986142 chrX_8986143_8986859;chrX_8984521_8984653 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.85 100.00 100.00 100.00 100.00 100.00 98.36 100.00 K alternative_last_exon CG4848 chr3R - chr3R_8041676_8042602 chr3R_8042409_8042602 chr3R_8041331_8041675 chr3R_8042355_8042408 chr3R_8042603_8043268 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 2.44 0.00 0.00 3.03 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 2.94 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 N multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814174;chr2R_2814327_2814894;chr2R_2815654_2816013;chr2R_2816342_2816577;chr2R_2816779_2817753 chr2R_2814175_2814326;chr2R_2814895_2815653;chr2R_2816014_2816341;chr2R_2816578_2816778 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 66.67 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Vha55 chr3R - chr3R_8453298_8453361 chr3R_8453297_8453298;chr3R_8453361_8453362 chr3R_8453171_8453297;chr3R_8453362_8453491 0.00 0.00 0.00 5.41 0.00 0.00 2.11 2.03 0.41 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 1.31 0.00 0.00 0.00 1.29 1.46 0.00 3.81 4.23 8.33 5.37 2.54 1.09 0.46 0.00 2.22 0.00 0.85 6.48 0.00 0.00 0.00 0.00 3.39 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 K alternative_acceptor CG8009,CG18628 chr3L + chr3L_10631595_10631665 chr3L_10631595_10631653 chr3L_10631534_10631594;chr3L_10631666_10631734 12.90 17.54 9.68 7.81 10.71 8.33 13.64 14.58 11.67 9.52 13.33 17.24 17.39 5.41 9.09 4.08 15.00 12.00 17.14 12.05 10.00 12.50 13.68 11.36 8.06 20.00 13.51 9.26 18.92 9.38 18.75 9.52 5.88 14.29 14.00 11.36 13.04 13.43 13.83 14.55 12.90 9.59 13.79 9.76 13.95 11.11 10.67 16.22 7.14 8.54 9.88 15.15 13.64 16.88 15.38 12.00 15.12 20.83 K intron_retention CG8311 chr2R - chr2R_12475017_12475108 chr2R_12475016_12475017;chr2R_12475108_12475109 chr2R_12474550_12475016;chr2R_12475109_12475760 2.44 0.00 0.00 12.50 1.82 2.13 6.17 2.41 4.10 0.00 0.00 2.24 4.55 4.65 1.49 0.00 0.00 0.00 0.00 2.31 0.00 0.00 3.51 2.70 6.52 10.71 5.80 3.23 7.14 0.00 6.12 0.00 0.00 2.44 6.67 8.33 5.33 1.59 3.64 0.00 14.29 3.88 3.70 0.00 1.69 9.43 1.89 10.00 0.00 2.90 1.45 0.00 2.86 0.00 3.45 3.57 5.00 5.00 K alternative_acceptor CG11089 chr3R + chr3R_20702857_20704778 chr3R_20702857_20702940 chr3R_20702788_20702856;chr3R_20704779_20704841 44.44 50.00 31.58 24.14 25.00 29.41 48.00 20.45 22.92 61.54 33.33 26.19 26.32 27.78 25.93 28.95 26.32 37.50 19.23 44.44 41.67 69.23 55.00 58.82 31.25 16.67 62.50 53.85 52.38 90.00 31.25 46.67 76.00 25.64 46.15 88.89 44.00 50.00 45.45 47.06 60.00 26.67 26.32 38.10 71.43 68.75 69.23 45.45 23.40 36.36 52.63 40.00 61.90 63.64 25.93 58.82 51.52 78.79 K jcn_only_AA CG32549,I_chrX_18286136_18286367,I_chrX_18286289_18286367,RI_chrX_18301919_18303082 chrX - chrX_18286136_18286367;chrX_18286194_18286367 chrX_18286289_18286367 chrX_18286368_18286467;chrX_18286073_18286135 0.00 0.00 0.53 0.00 0.00 0.00 0.74 0.00 0.27 0.00 0.00 0.70 0.00 0.00 0.49 0.44 0.00 0.00 0.00 0.84 0.00 0.46 0.00 0.30 0.00 0.00 0.37 0.30 1.38 0.61 2.14 0.00 0.49 0.38 0.56 1.44 0.31 0.00 0.00 1.26 0.00 0.00 0.00 0.84 1.61 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 K multi_cassette CG1674,I_chr4_253475_257020,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_254972_257894 chr4_254972_255489;chr4_255571_257020;chr4_257102_257894 chr4_255490_255570;chr4_257021_257101 chr4_254893_254971;chr4_257895_258185 77.12 83.33 80.00 54.55 NA 80.00 53.33 61.11 68.00 NA NA 73.68 55.56 70.00 100.00 76.47 80.00 57.14 85.71 77.78 NA NA 83.33 55.56 60.00 NA 100.00 NA NA 75.00 81.82 NA NA 77.78 80.00 NA NA NA NA 83.33 NA 75.00 83.33 83.33 NA 100.00 60.00 NA 65.00 NA 87.50 44.44 NA NA 60.00 NA 66.67 80.00 K intron_retention F_chr2R_18548367_18550224,R_chr2R_18548408_18548573,CG42566,I_chr2R_18551419_18551493 chr2R + chr2R_18550168_18550224 chr2R_18550167_18550168;chr2R_18550224_18550225 chr2R_18550124_18550167;chr2R_18550225_18550324 46.15 NA NA NA NA NA NA 87.50 60.00 NA NA NA NA NA NA 53.33 NA NA NA 64.29 63.64 NA NA NA NA NA NA NA NA NA 20.83 38.46 46.15 NA NA NA 47.06 NA NA 43.75 NA 46.15 NA 41.67 NA 46.15 NA 15.38 66.67 42.11 NA NA NA 60.00 NA 41.67 50.00 43.75 K alternative_donor CG3321,RI_chr3R_10154615_10155360 chr3R + chr3R_10152850_10152974;chr3R_10152811_10152974;chr3R_10152911_10152974 chr3R_10152906_10152974 chr3R_10152975_10153473;chr3R_10152803_10152810 8.33 11.86 6.45 9.16 7.06 2.86 17.71 10.07 5.50 9.30 7.04 8.46 7.59 5.71 8.77 6.59 6.17 8.22 6.82 5.84 7.06 16.00 11.36 4.62 3.23 10.47 13.16 13.04 22.22 18.18 7.06 7.41 12.20 5.22 15.00 7.69 10.26 6.00 6.78 23.73 15.79 4.91 5.48 13.73 5.68 15.62 9.09 12.90 5.38 8.33 11.43 10.87 15.56 19.05 4.42 6.25 6.72 17.31 K cassette CG8786 chr3L - chr3L_19634319_19635451 chr3L_19634319_19634993;chr3L_19635125_19635451 chr3L_19634994_19635124 chr3L_19634165_19634318;chr3L_19635452_19635864 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.24 100.00 100.00 100.00 100.00 100.00 100.00 81.82 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 90.00 93.75 100.00 100.00 100.00 NA 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA K intron_retention CG4692 chr2R - chr2R_20487021_20487139 chr2R_20487020_20487021;chr2R_20487139_20487140 chr2R_20486991_20487020;chr2R_20487140_20487222 0.00 0.00 0.00 0.00 0.00 0.37 0.35 0.00 0.00 0.00 0.38 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.68 0.00 0.31 0.00 0.00 1.26 1.46 0.98 0.15 0.00 0.00 0.00 0.00 0.28 0.00 0.10 0.07 0.00 0.12 0.00 0.67 0.00 0.00 0.37 0.23 0.10 0.00 0.27 0.12 0.00 0.00 0.39 0.21 0.00 0.16 0.26 0.00 K jcn_only_AA brm,I_chr3L_15968197_15968325 chr3L - chr3L_15975300_15975367 chr3L_15975312_15975367 chr3L_15975368_15975432;chr3L_15975223_15975299 66.67 61.80 54.35 74.00 63.64 74.42 60.00 62.50 59.00 56.25 70.73 66.67 72.73 60.00 62.50 86.49 78.26 66.07 76.47 68.63 69.05 61.54 62.87 62.50 63.77 71.15 67.65 88.70 71.00 63.11 75.61 66.67 56.52 70.00 68.83 67.46 61.79 67.37 65.75 73.82 73.91 61.18 65.52 73.96 67.16 62.50 58.11 77.07 71.26 64.94 69.90 67.24 59.02 58.93 70.69 61.19 47.92 72.29 K alternative_donor Mct1 chrX + chrX_2089073_2092664;chrX_2088826_2092664 chrX_2089096_2092664 chrX_2092665_2092972;chrX_2088634_2088825 8.00 7.14 8.33 0.00 0.00 11.11 0.00 10.00 5.26 0.00 12.50 0.00 0.00 10.00 18.18 4.55 18.18 0.00 0.00 11.11 13.33 17.39 14.29 4.35 23.08 0.00 20.83 14.81 0.00 8.33 0.00 22.22 8.00 11.11 8.00 3.70 14.29 0.00 4.17 6.45 10.53 0.00 12.50 5.00 9.09 3.70 8.33 4.35 0.00 4.23 8.00 8.33 0.00 10.00 8.33 5.26 8.82 19.05 K multi_cassette cora,I_chr2R_15125277_15130573,I_chr2R_15125940_15130208,I_chr2R_15129291_15129988 chr2R + chr2R_15125940_15129678 chr2R_15125940_15126293;chr2R_15128442_15128462;chr2R_15129291_15129678 chr2R_15126294_15128441;chr2R_15128463_15129290 chr2R_15125887_15125939;chr2R_15129679_15129900 100.00 100.00 100.00 99.83 100.00 100.00 99.78 100.00 99.88 100.00 100.00 100.00 100.00 100.00 100.00 99.78 100.00 100.00 100.00 100.00 99.71 99.86 100.00 99.80 99.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.84 100.00 100.00 99.76 100.00 100.00 100.00 100.00 99.69 99.86 100.00 100.00 99.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention gem,I_chr2R_6015083_6015660 chr2R + chr2R_6016198_6016288 chr2R_6016197_6016198;chr2R_6016288_6016289 chr2R_6016086_6016197;chr2R_6016289_6016324 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.88 0.00 2.44 16.00 0.00 15.00 NA 29.17 0.00 0.00 NA 0.00 0.00 0.00 10.53 0.00 0.00 5.88 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 3.12 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 K jcn_only_AD Npc1a chr2L - chr2L_10218890_10220796;chr2L_10218890_10220834;chr2L_10218890_10220692 chr2L_10218890_10220868 chr2L_10218779_10218889;chr2L_10220869_10220873 8.52 14.55 12.12 7.55 7.41 10.53 5.76 8.80 7.04 15.38 6.67 6.45 13.51 6.52 15.25 2.73 8.77 10.00 6.67 7.69 8.33 7.84 15.56 8.16 12.00 8.33 4.35 NA 10.81 6.00 3.23 NA 9.43 6.62 5.00 5.13 14.63 7.41 11.43 11.43 12.00 8.47 8.16 9.46 NA 9.68 22.73 8.57 9.92 NA 6.82 13.95 NA NA 10.53 18.18 NA 5.13 K intron_retention Chd1,I_chr2L_2986815_2987511 chr2L - chr2L_2985178_2985239 chr2L_2985177_2985178;chr2L_2985239_2985240 chr2L_2980636_2985177;chr2L_2985240_2985413 0.00 0.00 0.00 10.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA gce chrX + chrX_15211516_15211645 chrX_15211516_15211580 chrX_15211376_15211515;chrX_15211646_15212206 5.85 8.33 12.50 3.85 6.98 2.90 35.38 4.80 8.87 4.05 15.56 10.09 17.02 9.23 1.54 3.33 4.76 6.45 8.33 5.76 8.96 8.15 4.59 3.12 11.69 15.28 7.76 2.94 7.75 5.85 5.97 4.60 5.75 5.94 7.50 3.47 4.63 4.55 7.92 7.44 8.93 5.74 0.00 4.84 5.17 4.35 0.00 9.31 9.57 6.90 6.25 4.08 2.67 0.00 3.45 1.20 7.14 4.74 N multi_cassette betaTub97EF chr3R - chr3R_23794914_23798642 chr3R_23794914_23795104;chr3R_23795273_23795381;chr3R_23795550_23798642 chr3R_23795105_23795272;chr3R_23795382_23795549 chr3R_23794649_23794913;chr3R_23798643_23798872 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 61.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG5642,I_chr3L_12138351_12138781 chr3L - chr3L_12138351_12139055 chr3L_12138351_12138781 chr3L_12138251_12138350;chr3L_12139056_12139333 0.28 0.40 0.00 0.00 0.00 0.00 0.31 0.33 0.21 0.80 0.49 0.50 0.57 0.00 0.42 0.30 0.54 0.51 0.00 0.17 0.55 0.34 0.25 0.40 0.50 0.00 0.59 0.34 1.53 0.41 0.87 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.41 0.22 0.63 0.26 0.00 0.24 0.00 0.40 0.28 0.42 0.23 0.55 0.25 0.46 0.00 0.00 0.40 0.00 0.47 0.00 K intron_retention 14-3-3epsilon,I_chr3R_14068632_14073155,RI_chr3R_14074062_14074138 chr3R + chr3R_14068621_14073210 chr3R_14068620_14068621;chr3R_14073210_14073211 chr3R_14068532_14068620;chr3R_14073211_14073255 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.93 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Mmp1,E_chr2R_20560380_20562585,I_chr2R_20564123_20565214,I_chr2R_20569965_20572193 chr2R - chr2R_20560840_20562495 chr2R_20560839_20560840;chr2R_20562495_20562496 chr2R_20560775_20560839;chr2R_20562496_20562664 96.77 100.00 100.00 91.67 100.00 100.00 96.43 100.00 91.67 80.95 100.00 97.56 NA 100.00 100.00 100.00 100.00 NA 100.00 94.74 100.00 76.92 96.88 100.00 100.00 91.67 100.00 96.43 97.56 92.59 95.24 93.33 90.00 94.74 95.24 100.00 91.67 100.00 96.43 96.30 86.67 96.43 100.00 97.22 95.83 96.55 96.77 90.62 87.50 97.50 97.14 93.33 95.24 100.00 93.33 100.00 97.73 96.00 K intron_retention CG32486 chr3L - chr3L_3056923_3056992 chr3L_3056922_3056923;chr3L_3056992_3056993 chr3L_3056819_3056922;chr3L_3056993_3057270 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 1.94 0.00 0.00 1.09 0.00 2.27 2.00 6.56 0.00 0.00 0.00 1.58 0.00 2.20 0.00 0.00 1.35 0.00 2.47 0.00 6.52 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 2.15 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 K intron_retention fzy chr2L + chr2L_16311413_16311505 chr2L_16311412_16311413;chr2L_16311505_16311506 chr2L_16311009_16311412;chr2L_16311506_16311827 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 2.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Inos,I_chr2R_3344353_3345211 chr2R - chr2R_3342737_3342806 chr2R_3342737_3342802 chr2R_3342419_3342736;chr2R_3342807_3343274 0.75 0.56 0.85 0.66 1.09 0.79 0.49 1.26 0.67 0.64 0.59 0.45 0.25 1.10 0.83 1.55 0.56 0.57 1.24 0.48 0.57 0.71 0.65 0.60 1.06 1.29 0.73 1.08 0.95 0.69 1.44 0.97 0.71 0.85 1.10 0.74 0.81 0.55 0.37 0.94 0.78 0.75 0.96 0.55 0.62 1.18 0.73 1.00 0.77 0.63 1.15 0.89 0.85 0.70 1.36 0.59 0.65 1.10 K intron_retention CG12393,CG9135 chr2L + chr2L_6048419_6048511 chr2L_6048418_6048419;chr2L_6048511_6048512 chr2L_6048294_6048418;chr2L_6048512_6048626 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 98.15 100.00 100.00 100.00 93.33 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 97.06 100.00 100.00 100.00 100.00 98.08 98.11 100.00 97.87 100.00 95.83 96.67 100.00 100.00 95.00 97.50 100.00 97.37 100.00 100.00 100.00 100.00 97.78 100.00 100.00 K jcn_only_AA CG14619,I_chrX_21869837_21869915 chrX + chrX_21869837_21869947 chrX_21869837_21869915 chrX_21869758_21869836;chrX_21869948_21870015 0.00 1.69 0.85 0.41 0.00 1.75 0.00 0.45 0.50 0.00 0.00 0.40 0.96 0.00 0.00 0.56 1.71 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 3.51 2.08 0.00 0.00 0.38 0.00 1.01 0.00 1.96 0.00 0.60 1.39 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.43 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.64 0.00 K alternative_donor CG1832,I_chr2L_22168644_22168740 chr2L - chr2L_22168644_22168887 chr2L_22168644_22168740 chr2L_22168544_22168643;chr2L_22168888_22169038 0.00 0.00 0.00 4.76 0.00 0.00 1.19 1.11 1.48 0.00 0.00 1.16 1.61 4.00 1.72 3.26 0.00 0.00 4.17 2.83 0.00 0.00 0.00 0.00 2.38 0.00 2.04 0.00 0.00 1.96 3.28 0.00 0.00 1.09 0.00 4.65 0.00 0.00 0.00 0.00 2.13 0.91 4.65 1.82 0.00 1.85 0.00 1.37 1.94 0.00 2.13 0.00 0.00 0.00 3.33 0.00 0.00 1.04 K alternative_last_exon CG13865,I_chrX_22415456_22415654,RI_chrX_22415518_22416288 chrX + chrX_22415518_22416288 chrX_22415518_22415654 chrX_22416289_22418422 chrX_22415655_22416031 chrX_22415418_22415517 98.63 100.00 100.00 94.19 100.00 100.00 100.00 100.00 98.28 100.00 100.00 97.78 100.00 97.83 98.39 98.75 100.00 100.00 98.08 99.24 100.00 95.35 98.59 98.33 100.00 96.36 98.55 97.44 97.62 97.67 98.21 100.00 98.61 98.81 97.78 97.83 100.00 98.04 100.00 98.75 98.15 99.00 100.00 98.00 98.00 98.63 98.08 97.18 98.96 98.33 98.59 100.00 97.96 100.00 98.44 100.00 100.00 98.78 K jcn_only_AD CG40191,I_chr2RHet_391475_391828,I_chr2RHet_392279_392824 chr2RHet + chr2RHet_392686_392824;chr2RHet_392279_392824 chr2RHet_391927_392824 chr2RHet_392825_392923 18.52 NA NA NA NA 18.18 NA 18.18 37.50 NA NA 20.00 NA 7.69 30.00 16.28 NA 20.00 14.29 20.00 NA NA 38.10 8.70 NA NA 10.00 NA NA NA 12.50 NA NA 20.00 14.29 NA NA NA NA NA 52.00 16.00 NA NA NA 14.81 23.53 NA 11.90 NA 32.26 NA NA 18.52 NA 26.09 24.00 NA K alternative_acceptor tay,I_chrX_15774035_15774320,I_chrX_15779977_15780538,RI_chrX_15780874_15781045,I_chrX_15783766_15785978 chrX - chrX_15774035_15774320 chrX_15774255_15774320 chrX_15774321_15774420;chrX_15773935_15774034 97.14 98.21 97.78 95.24 100.00 97.30 92.00 94.37 96.19 100.00 97.22 98.78 97.37 100.00 97.62 95.74 96.88 97.50 95.12 98.02 96.88 62.32 94.87 93.44 93.48 89.74 94.59 98.08 94.74 98.39 97.50 96.55 96.97 96.67 97.83 100.00 96.47 94.74 100.00 98.98 96.30 96.77 97.06 98.25 100.00 100.00 97.62 98.41 94.52 97.37 98.61 97.22 97.14 96.55 91.84 97.06 100.00 93.48 K intron_retention CG11284,I_chrX_8581798_8581850,Ogg1 chrX + chrX_8581776_8581850 chrX_8581775_8581776;chrX_8581850_8581851 chrX_8581698_8581775;chrX_8581851_8581950 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 1.10 0.00 0.93 0.00 0.00 0.00 0.00 0.00 2.96 0.00 0.00 0.00 1.08 3.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 1.01 0.00 0.00 0.00 K intron_retention Cnx99A,I_chr3R_25144335_25145173,I_chr3R_25145243_25145309,I_chr3R_25145256_25145426 chr3R - chr3R_25145243_25145309 chr3R_25145242_25145243;chr3R_25145309_25145310 chr3R_25145174_25145242;chr3R_25145310_25145319 98.20 98.41 96.20 97.79 98.28 100.00 99.27 96.51 100.00 96.55 98.72 98.30 99.03 99.06 98.20 98.20 100.00 94.12 96.80 99.33 98.85 84.62 100.00 98.31 100.00 98.82 100.00 100.00 97.37 97.14 99.02 91.49 91.67 97.40 95.65 96.30 98.11 100.00 100.00 94.53 97.67 95.36 98.85 94.83 93.02 100.00 97.44 95.71 97.59 100.00 98.04 100.00 92.59 100.00 98.17 97.56 100.00 89.23 K jcn_only_AD shi,RI_chrX_15786633_15786860,RE_chrX_15793108_15795563 chrX + chrX_15786474_15786860;chrX_15786285_15786860;chrX_15786615_15786860;chrX_15786200_15786860;chrX_15786394_15786860 chrX_15786603_15786860 chrX_15786861_15786960;chrX_15786192_15786199 4.35 3.33 9.38 3.45 0.00 3.57 4.04 3.90 4.55 NA 5.56 5.56 0.00 2.22 0.00 1.45 6.00 NA 3.08 8.33 2.70 NA 4.55 3.33 18.52 3.57 4.44 NA NA 2.44 5.88 NA 4.76 4.55 6.45 0.00 4.35 13.04 NA 8.82 3.70 4.48 5.56 9.76 NA 0.00 NA 5.77 2.86 NA 2.22 10.00 NA NA 7.32 NA NA 0.00 K alternative_donor CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4839655;chr3R_4839215_4839561;chr3R_4839215_4839851;chr3R_4839215_4839728;chr3R_4839215_4839889 chr3R_4839215_4839799 chr3R_4839038_4839214;chr3R_4839890_4839901 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.22 0.00 16.67 16.67 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.00 0.00 0.00 K intron_retention U26,fu12 chr2L - chr2L_8448707_8448758 chr2L_8448706_8448707;chr2L_8448758_8448759 chr2L_8448425_8448706;chr2L_8448759_8449057 8.34 NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor Mtch,RI_chr3L_184729_185366,I_chr3L_185367_185925 chr3L + chr3L_184670_184777 chr3L_184670_184774 chr3L_184665_184669;chr3L_184778_184854 91.67 100.00 87.50 96.00 66.67 78.95 82.61 83.33 88.00 81.82 92.31 93.10 72.73 100.00 91.30 83.33 84.62 85.00 80.95 85.37 91.67 100.00 100.00 100.00 100.00 81.82 92.31 95.00 95.45 94.12 87.50 92.31 91.67 85.71 93.33 100.00 94.44 94.44 94.44 91.49 100.00 79.49 85.71 80.95 94.44 96.55 100.00 92.31 88.57 93.33 100.00 91.67 92.31 91.67 79.17 82.35 85.19 84.00 K intron_retention I_chr3L_8332291_8332360,DNApol-alpha50,CG7083 chr3L + chr3L_8334184_8334246 chr3L_8334183_8334184;chr3L_8334246_8334247 chr3L_8333912_8334183;chr3L_8334247_8335924 10.41 NA NA 12.50 NA NA 13.04 NA 14.81 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.33 NA NA NA NA NA NA NA NA NA K intron_retention CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4837672_4837766 chr3R_4837671_4837672;chr3R_4837766_4837767 chr3R_4837396_4837671;chr3R_4837767_4837866 0.00 0.00 0.00 6.14 0.98 0.00 2.13 1.02 2.22 0.00 0.00 3.05 0.00 1.69 1.23 0.00 0.00 0.00 0.00 0.77 3.33 0.49 1.52 0.00 0.00 0.00 2.56 6.40 0.00 1.74 1.64 0.00 0.00 0.00 2.70 0.00 1.15 0.60 0.00 1.38 0.00 2.16 0.00 1.56 0.00 0.00 0.42 0.00 1.80 0.93 2.03 0.00 0.00 0.00 1.03 1.92 0.00 0.00 K intron_retention Myo61F,mtacp1,I_chr3L_1330291_1330865,I_chr3L_1330291_1331279,RI_chr3L_1330929_1331041,l(3)02640 chr3L + chr3L_1330291_1331041 chr3L_1330290_1330291;chr3L_1331041_1331042 chr3L_1330191_1330290;chr3L_1331042_1331054 3.71 3.31 3.18 4.66 5.13 3.12 3.90 4.64 3.71 5.00 4.62 3.27 9.92 6.11 3.60 4.55 3.85 1.87 2.28 2.43 3.98 4.51 2.87 3.31 5.32 4.72 4.75 6.10 8.46 1.79 7.09 4.18 1.83 3.72 4.27 4.97 2.57 3.08 2.64 3.49 6.84 2.78 4.26 2.38 3.48 2.56 1.99 4.85 2.56 4.41 4.40 3.76 2.01 2.19 3.40 2.45 2.40 2.08 K alternative_acceptor CG1582,I_chrX_10792251_10792314 chrX - chrX_10792251_10792314 chrX_10792255_10792314 chrX_10792315_10792414;chrX_10792151_10792250 100.00 100.00 95.45 100.00 100.00 100.00 97.78 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 94.34 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 97.50 100.00 97.62 97.37 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 95.45 100.00 100.00 90.91 91.67 94.44 100.00 100.00 100.00 K jcn_only_AD CG14657 chr3R - chr3R_645633_645832 chr3R_645633_645780 chr3R_645516_645632;chr3R_645833_645870 28.58 NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA 18.18 NA NA NA NA NA NA NA NA NA NA NA 38.10 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 19.05 NA NA NA NA NA NA NA K alternative_donor Aats-val chr2R + chr2R_9086425_9086478;chr2R_9086421_9086478 chr2R_9086429_9086478 chr2R_9086479_9086689;chr2R_9086375_9086420 0.00 NA 0.00 0.00 NA NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K jcn_only_AA tomosyn,I_chrX_12527065_12527950,I_chrX_12531219_12531470,I_chrX_12534873_12541731,I_chrX_12548772_12549203 chrX + chrX_12525847_12527945;chrX_12525847_12529764 chrX_12525847_12527950 chrX_12525686_12525846 15.91 NA 25.00 21.57 NA NA 13.95 15.56 13.70 NA 8.33 29.27 15.00 10.34 NA 14.00 NA 29.63 18.18 32.61 14.81 NA 11.11 NA 9.52 20.83 14.29 NA NA NA 17.39 NA 35.00 15.91 8.33 17.39 NA NA NA 25.00 NA 23.26 5.00 NA NA NA 32.00 NA 16.67 NA NA NA NA NA 12.90 NA NA NA K intron_retention CG15083 chr2R + chr2R_14723018_14723784 chr2R_14723017_14723018;chr2R_14723784_14723785 chr2R_14722766_14723017;chr2R_14723785_14723852 5.26 6.11 7.48 3.55 7.44 7.96 3.30 4.20 6.08 2.63 3.64 4.35 4.95 7.94 6.34 9.80 7.14 4.90 6.41 5.17 6.74 4.62 7.87 4.32 5.80 5.26 4.73 4.26 4.49 5.50 6.02 2.86 2.46 6.12 7.34 4.17 4.02 6.00 3.31 3.06 2.16 5.64 5.94 5.08 5.80 5.56 6.98 3.87 7.12 5.92 4.40 7.37 4.35 2.70 6.72 6.55 3.17 2.00 K intron_retention CG8444,Vps16A chr3R + chr3R_5087066_5087327 chr3R_5087065_5087066;chr3R_5087327_5087328 chr3R_5086713_5087065;chr3R_5087328_5088417 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA msn,RI_chr3L_2557071_2557135,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2557071_2557135 chr3L_2557077_2557135 chr3L_2557136_2557235;chr3L_2556971_2557070 99.72 99.22 99.41 99.72 99.55 99.04 99.88 99.62 99.84 99.59 99.77 99.72 99.51 99.57 99.40 99.71 99.77 99.58 99.02 99.79 99.75 99.77 99.58 100.00 99.75 99.76 99.72 98.62 100.00 99.53 99.38 100.00 99.07 99.87 100.00 100.00 99.69 99.77 99.55 99.86 100.00 99.78 100.00 99.66 98.64 99.71 99.76 100.00 99.52 100.00 99.74 100.00 99.61 99.70 100.00 100.00 99.60 99.54 K intron_retention CG17018 chr2L + chr2L_22364295_22365192 chr2L_22364294_22364295;chr2L_22365192_22365193 chr2L_22363430_22364294;chr2L_22365193_22365324 8.59 11.59 6.94 3.11 8.55 6.87 8.70 8.49 13.09 1.32 14.29 7.22 15.86 11.56 7.14 7.17 8.33 6.12 8.15 8.75 10.64 11.11 8.13 11.70 8.59 3.14 8.19 12.99 5.88 8.06 6.53 23.91 5.14 6.55 13.73 6.03 8.06 9.73 13.97 8.37 13.64 8.33 8.94 7.01 16.67 17.50 24.05 2.60 8.84 29.91 11.57 11.40 14.08 19.44 6.97 24.05 24.72 7.14 K alternative_acceptor Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911803_5913354;chr2R_5911708_5913354;chr2R_5911755_5913354 chr2R_5911865_5913354 chr2R_5913355_5913433;chr2R_5911703_5911707 5.13 NA 5.56 9.09 7.69 0.00 13.33 3.45 5.13 0.00 9.09 0.00 22.22 0.00 6.67 8.33 11.11 10.00 0.00 4.00 6.25 0.00 5.88 7.69 16.67 14.29 0.00 NA NA 7.69 10.53 NA 0.00 3.23 20.00 11.11 0.00 NA 0.00 0.00 NA 3.33 0.00 0.00 NA 0.00 NA 13.33 6.67 NA 8.33 0.00 NA NA 0.00 0.00 0.00 NA K alternative_acceptor I_chr2L_4834257_4835246,CG15626,I_chr2L_4837691_4837844,I_chr2L_4837780_4837844 chr2L - chr2L_4837640_4837844;chr2L_4837780_4837844 chr2L_4837691_4837844 chr2L_4837845_4837944;chr2L_4837602_4837639 7.94 11.11 6.45 7.94 11.11 11.54 10.81 4.76 5.06 13.64 3.23 7.41 7.50 3.57 7.32 0.00 7.69 5.26 9.09 5.95 5.56 11.63 12.50 14.71 15.00 5.88 12.50 18.18 8.00 4.76 9.09 7.69 8.33 14.29 8.33 15.00 6.52 5.41 6.12 8.33 20.00 9.09 7.69 2.70 17.24 7.69 3.03 5.56 9.09 9.68 16.67 16.67 8.57 17.39 2.94 6.25 6.98 4.76 K alternative_acceptor CG4877 chr3L + chr3L_16379671_16379731 chr3L_16379671_16379725 chr3L_16379625_16379670;chr3L_16379732_16380052 42.27 NA 54.55 NA NA NA 41.18 NA 66.67 NA NA 42.86 NA NA 27.27 77.78 NA 50.00 45.45 47.62 NA NA 36.84 31.25 NA NA NA 45.45 36.36 41.67 NA NA NA 66.67 NA NA 33.33 NA NA 43.48 NA 37.50 NA 30.43 NA NA NA 43.75 33.33 NA 40.00 30.77 NA NA 60.00 NA NA NA N intron_retention CG17018,R_chr2L_22312023_22363414,CEI_chr2L_22325847_22356902 chr2L + chr2L_22354970_22365192 chr2L_22354969_22354970;chr2L_22365192_22365193 chr2L_22354872_22354969;chr2L_22365193_22365324 100.00 NA NA 33.33 NA NA 100.00 100.00 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention Gpo-1,I_chr2R_11747621_11747699,EI_chr2R_11747445_11747699,I_chr2R_11749758_11750187,I_chr2R_11756325_11756380 chr2R - chr2R_11748036_11748105 chr2R_11748035_11748036;chr2R_11748105_11748106 chr2R_11747882_11748035;chr2R_11748106_11748225 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 1.06 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon CG40045,noncoding_14308 chr3L + chr3L_24021824_24028531;chr3L_24021824_24023854 chr3L_24021824_24021910 chr3L_24028532_24029494;chr3L_24023855_24024038 chr3L_24021911_24022205 chr3L_24021648_24021823 5.52 3.90 4.17 8.28 2.08 5.66 2.83 6.35 3.66 3.45 2.27 3.55 7.92 5.05 4.08 5.05 4.92 5.77 4.76 6.36 2.33 2.44 5.88 6.12 5.56 0.00 4.88 9.09 0.00 5.13 2.82 2.63 7.14 6.13 6.17 7.14 9.30 8.70 5.56 5.48 4.44 5.52 4.00 4.40 2.78 7.29 6.25 7.69 5.47 7.62 5.88 6.49 4.92 5.80 5.97 7.59 5.59 5.63 K intron_retention RpL15,I_chr3LHet_2398455_2398737,psnoRNA:RpL15-a chr3LHet + chr3LHet_2398455_2398627 chr3LHet_2398454_2398455;chr3LHet_2398627_2398628 chr3LHet_2398355_2398454;chr3LHet_2398628_2399029 0.14 0.00 0.23 0.15 0.24 0.06 0.09 0.23 0.16 0.00 0.00 0.20 0.31 0.12 0.10 0.08 0.16 0.06 0.28 0.18 0.00 0.18 0.08 0.20 0.17 0.14 0.26 0.42 0.00 0.18 0.08 0.18 0.00 0.16 0.14 0.12 0.00 0.00 0.00 0.15 0.19 0.11 0.14 0.00 0.17 0.19 0.08 0.00 0.30 0.31 0.15 0.00 0.09 0.00 0.08 0.00 0.20 0.32 K jcn_only_AA Tif-IA chr2L + chr2L_22257903_22257999 chr2L_22257903_22257959 chr2L_22257653_22257902;chr2L_22258000_22258221 97.09 95.88 97.09 99.20 96.51 98.59 98.30 97.25 97.84 100.00 93.98 96.10 100.00 96.99 93.52 98.73 93.97 93.62 93.50 96.11 97.80 100.00 97.10 99.13 98.53 97.50 96.99 98.72 92.86 93.85 92.86 98.00 98.04 93.41 95.45 94.83 98.81 100.00 95.08 98.28 96.43 97.55 95.37 97.06 98.41 96.23 97.80 96.23 97.42 97.03 98.39 100.00 95.00 96.20 92.16 94.59 97.60 98.53 K cassette Mhc,I_chr2L_16777440_16780549,I_chr2L_16777440_16782343,REF_chr2L_16777749_16780549,EF_chr2L_16778123_16780549,I_chr2L_16779200_16780549,I_chr2L_16780813_16782343,I_chr2L_16784330_16785409 chr2L + chr2L_16777440_16782343 chr2L_16777440_16780549;chr2L_16780814_16782343 chr2L_16780550_16780813 chr2L_16777340_16777439;chr2L_16782344_16782443 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG31612,E_chr2L_21775447_21821182,CG11630 chr2L - chr2L_21775447_21795245 chr2L_21775446_21775447;chr2L_21795245_21795246 chr2L_21775400_21775446;chr2L_21795246_21795464 0.00 NA NA 45.45 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD ND23,I_chr3R_11662529_11662629 chr3R - chr3R_11662529_11662711 chr3R_11662529_11662629 chr3R_11662429_11662528;chr3R_11662712_11662729 0.00 0.47 0.00 0.00 1.01 0.00 0.00 1.31 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.43 0.35 0.00 0.00 0.00 0.00 3.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.37 0.00 0.53 0.00 0.00 0.00 0.37 0.32 0.00 0.00 0.00 1.56 K intron_retention CG5114 chr3L + chr3L_14976891_14977012 chr3L_14976890_14976891;chr3L_14977012_14977013 chr3L_14975948_14976890;chr3L_14977013_14977220 0.00 0.00 2.74 2.17 0.00 0.00 4.23 0.00 2.11 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 7.46 0.00 2.50 0.00 0.00 1.37 1.47 1.28 0.00 0.00 0.00 0.00 2.22 0.00 2.27 2.44 0.00 0.00 0.93 2.22 0.91 0.00 0.00 0.00 0.00 0.00 1.09 2.68 0.00 2.63 0.00 0.00 3.12 0.00 1.23 0.00 0.00 K jcn_only_AD Msp-300,I_chr2L_5197634_5197866 chr2L + chr2L_5196285_5197866 chr2L_5197634_5197866 chr2L_5197867_5197966;chr2L_5195979_5196284 0.51 0.79 2.83 1.46 0.00 0.00 0.70 2.65 0.00 4.11 0.00 1.72 1.27 1.60 0.87 0.00 0.71 1.87 1.94 0.00 1.08 0.00 1.22 1.49 0.00 0.00 0.00 1.59 3.85 0.00 3.03 3.70 0.00 0.51 0.00 0.00 0.34 1.42 0.00 0.76 0.00 0.40 2.02 1.60 0.00 0.00 0.00 0.00 1.35 0.00 0.00 3.12 1.37 2.22 0.00 0.00 0.00 0.00 K intron_retention l(2)06225,I_chr2L_10976148_10976250 chr2L - chr2L_10976162_10976250 chr2L_10976161_10976162;chr2L_10976250_10976251 chr2L_10975774_10976161;chr2L_10976251_10976305 0.39 0.00 0.00 2.29 0.00 0.26 1.12 0.00 0.85 0.00 0.00 0.31 1.10 0.00 0.52 0.23 0.76 0.32 0.39 0.43 0.48 1.48 0.70 0.68 0.84 2.21 2.27 3.05 3.57 0.00 0.17 0.00 0.00 0.26 1.23 3.87 0.00 0.00 0.00 0.35 1.60 0.88 0.00 0.35 0.88 0.45 0.29 0.45 0.26 1.18 0.50 0.42 0.00 0.39 0.00 0.00 0.69 0.20 K jcn_only_AD Nacalpha,I_chr2R_8648027_8648303 chr2R - chr2R_8648027_8648309;chr2R_8648027_8648231 chr2R_8648027_8648305 chr2R_8647927_8648026;chr2R_8648310_8648314 16.11 8.70 18.92 24.44 32.56 26.92 17.95 27.03 10.11 NA 17.24 13.11 6.98 3.57 13.56 7.14 18.75 25.00 9.09 10.53 12.12 27.59 12.28 15.00 NA 12.73 14.29 76.92 16.22 28.57 11.86 17.86 35.29 14.29 16.00 NA 8.62 6.00 15.15 82.86 37.93 12.99 27.78 83.06 27.91 21.05 15.00 19.44 20.48 18.42 7.69 2.33 70.63 11.63 15.38 15.09 20.29 36.62 K intron_retention Vps36 chr3L - chr3L_13505182_13505239 chr3L_13505181_13505182;chr3L_13505239_13505240 chr3L_13504604_13505181;chr3L_13505240_13505965 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 1.33 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20824631_20825658 chr2L_20824630_20824631;chr2L_20825658_20825659 chr2L_20824625_20824630;chr2L_20825659_20825758 92.86 94.94 91.23 90.38 82.76 90.74 94.29 88.57 92.05 96.77 90.70 92.62 75.51 90.38 92.73 92.93 70.00 91.67 91.11 89.17 90.24 96.36 99.29 97.39 97.78 96.49 99.18 98.23 98.90 91.38 92.86 89.29 75.00 83.02 98.59 98.88 97.87 100.00 97.20 94.29 93.62 83.50 93.94 93.42 90.77 89.00 95.88 81.16 91.18 100.00 97.54 98.18 95.95 99.12 88.71 97.73 92.47 76.27 K intron_retention CG17471,RI_chr4_1213397_1214333,RI_chr4_1213397_1216053,RI_chr4_1214248_1214333,I_chr4_1214293_1214333,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1214281_1214333 chr4_1214280_1214281;chr4_1214333_1214334 chr4_1214280_1214280;chr4_1214334_1214402 0.00 4.65 0.00 11.76 0.00 0.00 2.63 4.71 0.00 NA 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 2.17 0.00 0.00 4.55 0.00 0.00 8.70 7.41 NA 0.00 0.00 0.00 0.00 0.00 2.50 4.35 NA 0.00 0.00 0.00 0.00 4.17 2.35 0.00 2.13 0.00 0.00 0.00 0.00 4.44 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Nacalpha,I_chr2R_8648027_8648303 chr2R - chr2R_8648027_8648305;chr2R_8648027_8648231 chr2R_8648027_8648309 chr2R_8647927_8648026;chr2R_8648310_8648314 8.80 2.17 10.81 2.22 25.58 7.69 2.56 13.51 8.99 NA 10.34 3.28 9.30 3.57 10.17 5.71 6.25 16.67 13.64 13.16 15.15 6.90 3.51 20.00 NA 14.55 5.71 6.59 5.41 0.00 6.78 7.14 11.76 12.70 12.00 NA 8.62 6.00 12.12 1.27 3.45 11.69 2.78 0.81 11.63 7.02 7.50 8.33 10.84 18.42 5.13 11.63 7.14 9.30 15.38 9.43 20.29 14.08 K intron_retention CG17715,I_chr2L_22741825_22741944,I_chr2L_22742106_22746918 chr2L + chr2L_22741825_22741913 chr2L_22741824_22741825;chr2L_22741913_22741914 chr2L_22741725_22741824;chr2L_22741914_22741939 100.00 100.00 100.00 93.33 88.89 100.00 97.22 100.00 94.12 NA 100.00 94.74 100.00 NA 100.00 81.25 100.00 NA 94.74 100.00 90.00 NA 100.00 100.00 90.91 92.31 100.00 100.00 92.31 NA 97.44 NA NA 100.00 87.50 100.00 87.50 NA 100.00 95.83 90.91 94.74 NA 100.00 NA 100.00 NA 92.86 95.83 100.00 100.00 100.00 NA NA 90.91 NA 100.00 100.00 K intron_retention I_chr2R_19265701_19270570,CG3530,CG3520 chr2R - chr2R_19276942_19277003 chr2R_19276941_19276942;chr2R_19277003_19277004 chr2R_19276529_19276941;chr2R_19277004_19277181 96.51 87.10 100.00 98.57 100.00 96.97 100.00 97.75 95.74 94.12 90.00 98.53 91.49 97.67 96.08 98.68 93.02 94.59 96.55 96.34 97.30 82.50 97.92 97.50 96.43 91.67 93.22 95.00 98.11 95.56 93.85 98.11 94.19 97.53 94.74 100.00 100.00 86.96 97.67 97.14 98.90 95.10 100.00 94.00 96.83 95.24 94.74 94.81 96.51 98.31 96.23 96.88 94.59 97.83 98.36 98.08 94.29 95.83 K jcn_only_AD CoRest,I_chrX_19416977_19417035 chrX + chrX_19416603_19417035;chrX_19416431_19417035;chrX_19416669_19417035;chrX_19416423_19417035 chrX_19416977_19417035 chrX_19417036_19417135;chrX_19416201_19416422 2.38 0.00 0.00 4.82 3.08 3.57 5.00 3.30 1.42 1.35 1.61 4.48 1.69 0.00 2.74 2.74 2.86 0.00 3.45 1.39 1.96 3.45 1.30 2.76 4.11 3.57 0.00 4.00 0.00 3.92 8.57 3.80 2.70 2.06 3.67 0.00 2.19 0.64 2.48 1.52 6.00 1.33 3.92 1.14 8.24 3.26 2.97 5.79 2.26 1.11 0.00 1.28 3.90 1.14 2.38 2.08 2.27 1.16 K intron_retention Atpalpha,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16799461_16799532 chr3R_16799460_16799461;chr3R_16799532_16799533 chr3R_16799228_16799460;chr3R_16799533_16800053 0.00 0.00 0.00 0.90 0.30 0.00 0.00 0.45 0.15 0.00 0.00 0.19 0.48 0.31 0.32 0.30 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.49 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.20 0.00 0.00 0.00 0.00 0.23 0.00 0.00 K alternative_last_exon Atf-2 chr2R + chr2R_20758769_20765661 chr2R_20758769_20758821 chr2R_20765662_20766625 chr2R_20758822_20759083 chr2R_20757624_20758768 93.75 93.75 89.47 82.05 91.67 91.67 95.45 90.32 90.00 100.00 91.67 96.43 100.00 100.00 94.74 89.66 100.00 100.00 100.00 96.88 92.86 81.82 87.50 96.15 91.67 92.86 88.89 77.78 86.67 81.82 94.44 94.74 88.89 97.06 93.33 88.89 94.44 90.00 95.45 90.48 86.67 89.47 93.75 94.12 96.00 95.83 96.15 92.31 97.30 96.00 95.00 88.89 93.75 95.45 95.00 96.00 92.00 95.83 K jcn_only_AA PNUTS,I_chr2L_870553_871317 chr2L + chr2L_870553_871352 chr2L_870553_871340 chr2L_870478_870552;chr2L_871353_871417 100.00 98.04 NA 100.00 100.00 100.00 100.00 100.00 99.35 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 97.01 100.00 97.22 100.00 100.00 100.00 100.00 98.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 98.63 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 K intron_retention CG5514,RI_chr3R_23768206_23768306,Gp93 chr3R + chr3R_23767856_23768306 chr3R_23767855_23767856;chr3R_23768306_23768307 chr3R_23765429_23767855;chr3R_23768307_23768406 58.33 58.33 NA 64.29 NA 63.64 NA 47.62 47.06 NA NA 68.18 45.45 66.67 45.45 42.86 NA 60.00 NA 41.67 77.78 NA NA 52.63 NA 71.43 57.14 81.82 69.23 90.00 58.82 59.09 52.94 64.71 56.25 66.67 33.33 NA 56.00 58.33 45.00 42.11 NA 72.73 65.22 52.38 43.75 68.75 60.87 63.16 47.62 NA 60.00 52.00 NA 56.25 34.78 40.00 K intron_retention Cip4,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4336320_4338066 chr3L_4336319_4336320;chr3L_4338066_4338067 chr3L_4336269_4336319;chr3L_4338067_4338182 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG5359 chr3R - chr3R_5826088_5826294 chr3R_5826091_5826294 chr3R_5826295_5826603;chr3R_5825900_5826087 36.94 NA NA 38.71 NA NA 57.14 36.84 52.78 NA NA 29.17 NA 30.00 NA NA 52.38 NA 50.00 31.71 25.00 NA 34.62 40.74 NA NA 47.37 NA NA NA 40.00 NA 51.85 39.29 NA NA NA NA 19.23 36.36 NA 62.79 NA NA NA 37.50 29.63 NA 34.21 31.03 NA NA 47.62 29.03 NA 33.33 28.95 37.04 K cassette CG42595,I_chr2RHet_3155517_3174709,RI_chr2RHet_3175044_3179353,RI_chr2RHet_3179300_3179586,I_chr2RHet_3179481_3179586 chr2RHet - chr2RHet_3175044_3179353;chr2RHet_3175044_3179586 chr2RHet_3175044_3179091;chr2RHet_3179300_3179353,chr2RHet_3179300_3179586 chr2RHet_3179092_3179299 chr2RHet_3174944_3175043;chr2RHet_3179587_3179598 97.37 96.67 94.87 100.00 95.24 94.12 98.75 96.70 100.00 100.00 93.33 89.47 97.50 97.78 89.47 93.86 97.37 87.50 98.18 95.45 81.82 100.00 96.97 96.43 100.00 92.31 96.30 100.00 100.00 90.00 98.04 90.91 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 98.63 97.73 96.97 100.00 94.12 100.00 82.61 96.15 100.00 100.00 100.00 90.00 100.00 90.24 92.31 94.74 90.48 K jcn_only_AA hts,I_chr2R_15286599_15294119,I_chr2R_15311185_15312327,I_chr2R_15311303_15312026 chr2R - chr2R_15286305_15286530 chr2R_15286311_15286530 chr2R_15286531_15286598;chr2R_15286061_15286304 70.33 75.19 73.25 74.39 77.30 68.28 67.50 67.87 70.64 66.67 65.49 70.72 73.47 73.81 68.67 79.19 73.61 68.66 70.33 71.86 77.27 71.28 71.14 69.70 63.77 69.23 61.62 46.55 73.47 60.00 69.54 67.95 69.81 71.90 69.79 64.84 66.91 74.42 74.10 72.05 71.64 71.27 68.46 69.91 77.00 75.94 66.36 68.70 74.42 67.52 67.95 70.00 69.72 71.62 75.12 70.40 73.63 70.16 K intron_retention CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_155591_155927,I_chr4_157014_157316,RI_chr4_157014_157504,I_chr4_157794_157864 chr4 + chr4_155591_157504 chr4_155590_155591;chr4_157504_157505 chr4_155499_155590;chr4_157505_157604 0.00 0.00 0.00 5.71 NA 0.00 1.89 0.00 2.44 NA 0.00 0.00 NA 0.00 0.00 6.15 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA 1.82 NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 5.56 0.00 NA NA NA NA NA 0.00 NA NA NA K alternative_donor CG32163 chr3L + chr3L_16580506_16580609;chr3L_16580557_16580609 chr3L_16580348_16580609 chr3L_16580610_16580996;chr3L_16580335_16580347 42.86 57.14 58.33 20.00 40.00 66.67 36.84 28.57 33.33 NA 57.14 28.57 25.00 16.67 50.00 36.84 28.57 57.14 46.67 23.08 33.33 33.33 50.00 50.00 NA 25.00 37.50 NA 25.00 NA 36.36 77.78 NA 35.71 NA NA 40.00 66.67 71.43 41.67 NA 43.75 20.00 42.86 42.86 50.00 50.00 NA 52.94 69.23 37.50 66.67 63.64 40.00 44.44 50.00 46.67 50.00 K intron_retention mre11 chr2L + chr2L_11284119_11284185 chr2L_11284118_11284119;chr2L_11284185_11284186 chr2L_11283809_11284118;chr2L_11284186_11284345 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.84 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Gpo-1,EI_chr2R_11747445_11747699,I_chr2R_11749758_11750187,I_chr2R_11756325_11756380 chr2R - chr2R_11748259_11750187;chr2R_11748228_11750187 chr2R_11749758_11750187 chr2R_11750188_11750219;chr2R_11748106_11748227 1.54 0.00 2.78 0.00 NA 0.00 3.95 0.00 7.27 2.70 9.09 1.32 0.00 7.69 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.84 0.00 1.39 0.00 3.57 0.00 4.26 2.13 7.41 0.00 5.66 5.66 2.33 2.17 7.14 2.82 0.00 1.23 2.61 1.89 0.00 NA 4.30 1.32 1.54 0.00 0.00 2.99 3.57 0.76 1.69 7.41 2.27 0.00 0.00 NA 3.70 K intron_retention Nc,noncoding_11800 chr3L + chr3L_9963785_9963849 chr3L_9963784_9963785;chr3L_9963849_9963850 chr3L_9962944_9963784;chr3L_9963850_9964208 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Doa,I_chr3R_24715823_24718923,I_chr3R_24738109_24738303,I_chr3R_24747391_24747896 chr3R + chr3R_24726745_24745946 chr3R_24726744_24726745;chr3R_24745946_24745947 chr3R_24726546_24726744;chr3R_24745947_24746013 34.84 NA NA NA NA NA 22.73 NA 36.36 NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG5537,I_chr3L_5804425_5804485 chr3L + chr3L_5804425_5804485 chr3L_5804424_5804425;chr3L_5804485_5804486 chr3L_5804325_5804424;chr3L_5804486_5804585 92.31 NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 81.82 NA 100.00 83.33 100.00 NA 100.00 92.31 NA 92.31 NA 93.33 NA 91.67 NA NA 100.00 90.91 NA 92.31 90.91 100.00 100.00 NA NA 90.00 100.00 90.91 91.67 NA 88.89 91.67 NA NA NA NA 100.00 100.00 90.00 K intron_retention CG1440 chrX + chrX_8334515_8334577 chrX_8334514_8334515;chrX_8334577_8334578 chrX_8334394_8334514;chrX_8334578_8334969 0.00 1.50 0.00 0.88 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.57 0.96 0.00 0.90 1.40 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 1.52 2.78 0.00 0.00 2.13 0.00 0.00 2.71 0.82 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 K intron_retention vkg,I_chr2L_5027222_5028118 chr2L - chr2L_5013145_5013211 chr2L_5013144_5013145;chr2L_5013211_5013212 chr2L_5012137_5013144;chr2L_5013212_5013435 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 K jcn_only_AD Marf,I_chrX_6263726_6263783 chrX + chrX_6260105_6260665 chrX_6260266_6260665 chrX_6260666_6261196;chrX_6260018_6260104 97.81 NA NA 96.55 NA NA 97.50 98.33 97.47 NA 95.00 95.83 94.12 94.74 100.00 98.48 96.67 NA 94.12 94.12 NA 87.50 96.15 100.00 100.00 NA 96.30 NA 100.00 96.30 91.67 100.00 100.00 98.11 100.00 NA NA NA NA 100.00 100.00 100.00 93.55 91.67 100.00 100.00 88.46 100.00 100.00 NA 100.00 96.00 NA NA 96.67 NA 100.00 98.44 K alternative_donor CG31038,I_chr3R_25702915_25703648,I_chr3R_25705533_25722419,I_chr3R_25727788_25727905 chr3R + chr3R_25702989_25703648;chr3R_25702895_25703648;chr3R_25702897_25703648;chr3R_25702901_25703648;chr3R_25702838_25703648;chr3R_25702970_25703648 chr3R_25702915_25703648 chr3R_25703649_25703748;chr3R_25702831_25702837 8.33 0.00 9.09 0.00 NA 25.00 11.11 0.00 0.00 0.00 NA 5.56 0.00 14.29 0.00 15.38 NA 25.00 16.67 10.34 0.00 10.53 8.33 7.69 9.09 0.00 10.00 28.57 10.00 0.00 6.25 25.00 7.69 7.69 6.25 9.09 6.67 11.11 7.14 8.33 0.00 6.67 NA 9.09 0.00 0.00 10.00 8.33 23.08 11.11 9.09 11.11 20.00 14.29 11.11 11.11 0.00 0.00 K jcn_only_AD CG10277,I_chr3R_2208983_2210253,I_chr3R_2211939_2212057 chr3R + chr3R_2209244_2210702;chr3R_2208983_2210702 chr3R_2209240_2210702 chr3R_2210703_2210980;chr3R_2208883_2208982 1.70 0.00 0.00 3.43 0.00 1.14 3.45 0.44 2.42 0.85 0.00 3.55 0.00 1.05 0.99 1.20 0.00 1.47 1.90 2.49 1.15 5.45 2.10 3.38 2.41 1.80 2.29 1.06 8.11 1.25 0.77 0.78 0.94 2.92 2.17 4.73 2.80 NA 0.49 1.71 2.48 2.61 0.00 2.94 6.06 2.67 2.14 1.78 2.33 1.43 1.53 1.69 3.12 1.54 0.96 3.23 0.00 1.44 K jcn_only_AD Atg7,I_chr2R_14508838_14508931 chr2R - chr2R_14508838_14510509 chr2R_14508838_14508931 chr2R_14508738_14508837;chr2R_14510510_14510674 7.14 0.00 NA 4.88 NA NA 2.94 23.08 12.00 NA 3.57 7.50 NA NA 4.76 NA NA 5.00 NA 6.25 4.55 3.03 7.14 14.81 NA NA 17.24 NA 8.33 4.00 20.00 0.00 4.35 7.14 10.00 NA 5.88 NA 7.89 11.11 0.00 5.13 NA 4.55 11.54 16.00 11.54 19.05 NA 10.71 NA NA NA NA 9.09 NA 7.14 NA N intron_retention Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2608645_2611315 chr3L_2608644_2608645;chr3L_2611315_2611316 chr3L_2608526_2608644;chr3L_2611316_2611367 32.29 NA NA 16.22 5.26 NA 36.36 33.33 31.25 NA NA 33.33 NA 36.36 28.57 NA NA 100.00 NA 23.08 NA NA NA NA NA NA 26.67 NA NA NA NA NA NA 35.71 NA 100.00 NA NA NA NA NA 19.05 NA NA NA NA NA NA 42.86 NA 15.38 NA NA NA NA NA NA NA K cassette CG40263,F_chr2RHet_1265687_1293040,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1286572_1293055;chr2RHet_1265687_1293055 chr2RHet_1265687_1292103,chr2RHet_1286572_1292103;chr2RHet_1292187_1293055 chr2RHet_1292104_1292186 chr2RHet_1265587_1265686;chr2RHet_1293056_1293121 83.33 94.12 78.57 100.00 66.67 91.67 83.33 91.67 84.21 NA NA 83.33 53.85 80.00 78.57 87.50 83.33 75.00 93.33 81.82 NA NA 85.71 78.95 NA 92.31 87.50 NA NA 80.00 93.75 NA NA 81.82 90.00 NA 100.00 81.82 75.00 70.59 NA 78.79 77.27 88.24 NA 86.67 100.00 NA 81.25 NA 84.21 81.82 87.50 91.67 71.43 92.31 87.50 66.67 N jcn_only_AD CG8051,I_chrX_19198128_19201351 chrX - chrX_19198128_19199326;chrX_19198128_19201671 chrX_19198128_19199330 chrX_19198028_19198127;chrX_19201672_19201734 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 36.36 0.00 NA 0.00 NA NA NA NA NA NA 0.00 K alternative_acceptor Cpsf100,Pkc98E chr3R + chr3R_24860534_24860596 chr3R_24860534_24860592 chr3R_24860465_24860533;chr3R_24860597_24862784 100.00 100.00 93.33 100.00 100.00 100.00 96.15 100.00 96.55 NA 100.00 100.00 100.00 92.31 100.00 100.00 100.00 94.74 100.00 94.44 94.74 100.00 93.75 100.00 NA 100.00 100.00 94.74 88.89 100.00 100.00 100.00 100.00 96.55 100.00 100.00 93.75 100.00 100.00 100.00 100.00 97.22 100.00 88.89 90.91 NA 100.00 100.00 96.88 100.00 93.33 100.00 100.00 NA 95.45 100.00 100.00 100.00 K jcn_only_AA CG12118,RI_chrX_9090173_9090228 chrX - chrX_9090153_9090228 chrX_9090170_9090228 chrX_9090229_9090294;chrX_9090085_9090152 16.67 NA NA NA NA NA 26.92 3.57 16.67 NA NA 16.67 NA NA NA NA NA NA NA 26.47 NA NA 16.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.00 NA 19.05 NA NA NA NA NA 9.09 NA K alternative_donor CG11148,I_chr4_886499_886547,RI_chr4_886921_887162 chr4 - chr4_886478_886556 chr4_886478_886547 chr4_886399_886477;chr4_886557_886647 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG12734,I_chr3L_3183812_3183932,I_chr3L_3184645_3185360 chr3L + chr3L_3183800_3183932 chr3L_3183812_3183932 chr3L_3183933_3183997;chr3L_3183712_3183799 2.63 5.00 2.63 0.00 2.50 2.70 4.00 2.78 2.13 3.03 4.00 6.25 4.00 3.12 0.00 0.00 3.12 0.00 0.00 5.26 0.00 4.35 1.39 2.38 9.30 0.00 4.48 4.62 2.17 2.08 4.76 2.56 7.84 2.04 2.63 6.25 1.67 4.84 2.38 4.62 5.88 1.25 3.12 1.79 9.30 0.00 4.48 7.14 1.39 2.86 1.33 6.45 6.98 1.61 2.33 0.00 1.72 2.44 K jcn_only_AA Tak1 chrX - chrX_20393791_20394085 chrX_20393848_20394085 chrX_20394086_20394385;chrX_20393532_20393790 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.04 100.00 100.00 100.00 100.00 100.00 100.00 98.99 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.15 98.58 100.00 100.00 100.00 98.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention wun2,I_chr2R_5304606_5304660 chr2R + chr2R_5305077_5305137 chr2R_5305076_5305077;chr2R_5305137_5305138 chr2R_5305008_5305076;chr2R_5305138_5305166 2.06 2.14 0.00 14.86 1.90 0.95 10.14 2.76 2.93 2.00 2.15 1.04 0.00 4.51 1.45 1.09 2.53 0.00 1.01 2.60 1.61 1.90 6.83 0.50 7.55 13.08 4.03 7.00 15.49 1.75 3.36 2.06 2.91 1.71 0.54 20.47 1.66 2.00 0.87 2.78 25.56 2.71 4.04 3.53 1.42 2.00 1.08 3.95 0.89 1.80 2.27 0.00 0.00 1.03 2.34 1.83 2.34 9.09 K jcn_only_AD RhoGAPp190,I_chrX_17544272_17544863,I_chrX_17546225_17546531 chrX - chrX_17544272_17546531;chrX_17544272_17546123 chrX_17544272_17546421 chrX_17544172_17544271;chrX_17546532_17546535 4.76 0.00 0.00 1.82 2.38 6.67 9.23 3.92 1.14 8.00 2.70 7.32 6.90 0.00 2.04 5.41 0.00 0.00 0.00 15.79 0.00 5.56 25.00 NA NA 8.11 NA NA 3.12 6.25 8.51 NA 10.64 4.92 11.54 NA NA NA NA 4.55 NA 2.90 3.23 3.23 NA NA NA 6.67 5.56 NA 20.83 NA NA NA 4.76 NA NA 4.76 K intron_retention pyd,I_chr3R_4654041_4664113,I_chr3R_4749124_4756437 chr3R - chr3R_4656728_4657863 chr3R_4656727_4656728;chr3R_4657863_4657864 chr3R_4655437_4656727;chr3R_4657864_4657996 5.88 18.37 6.45 17.50 4.35 9.38 7.14 28.21 11.11 4.44 NA 9.84 NA 13.64 20.00 7.41 7.41 5.88 16.67 19.61 0.00 4.32 12.33 4.62 4.65 6.25 6.56 4.29 4.26 6.15 5.26 3.57 6.06 8.51 3.77 2.17 5.21 4.35 5.80 5.51 5.77 9.33 6.90 7.02 0.00 3.77 0.00 9.28 4.00 0.00 5.88 6.06 0.00 0.00 7.69 0.00 0.00 4.44 K intron_retention I_chr3R_22696095_22697413,Rb97D chr3R - chr3R_22699739_22699792 chr3R_22699738_22699739;chr3R_22699792_22699793 chr3R_22699582_22699738;chr3R_22699793_22700512 0.00 0.00 NA 4.00 0.00 NA 0.00 0.00 2.13 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 4.35 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 NA 0.00 0.00 NA K alternative_acceptor TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748981_19749783 chr2R_19748984_19749783 chr2R_19749784_19750104;chr2R_19748884_19748980 25.41 20.00 29.63 22.22 28.57 38.46 30.23 22.64 25.00 NA 17.65 20.37 26.09 24.14 25.00 27.03 24.00 40.00 18.92 24.00 22.22 40.00 15.15 29.17 33.33 23.53 23.33 25.00 42.86 36.84 25.93 31.25 30.77 26.83 33.33 36.36 23.08 25.00 24.24 24.24 27.78 27.27 29.41 22.22 31.25 23.08 33.33 22.22 28.00 24.00 14.29 20.00 38.46 15.38 36.36 30.77 18.52 25.81 K intron_retention dre4,I_chr3L_1875590_1875651,F_chr3L_1877432_1877517 chr3L - chr3L_1871918_1872581 chr3L_1871917_1871918;chr3L_1872581_1872582 chr3L_1871528_1871917;chr3L_1872582_1872735 1.26 2.34 0.96 6.29 2.46 0.68 2.74 1.68 1.90 0.00 1.53 0.34 0.76 1.88 1.22 1.26 1.94 1.43 3.07 1.36 1.60 2.58 1.97 1.19 0.56 0.60 1.36 0.66 0.71 0.80 2.99 0.90 0.61 2.12 0.60 0.68 1.72 1.86 0.60 0.72 1.54 1.34 0.00 0.00 0.00 1.02 1.65 1.30 1.44 0.57 1.55 0.00 0.00 0.98 2.38 0.60 1.29 0.00 K intron_retention CG13510,F_chr2R_18548367_18550224,R_chr2R_18548408_18548573,I_chr2R_18551419_18551493 chr2R + chr2R_18548367_18548573 chr2R_18548366_18548367;chr2R_18548573_18548574 chr2R_18548308_18548366;chr2R_18548574_18548673 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG6509 chr2L - chr2L_11509684_11509734 chr2L_11509683_11509684;chr2L_11509734_11509735 chr2L_11509467_11509683;chr2L_11509735_11509964 0.00 0.00 1.89 4.82 2.27 0.00 3.33 6.58 0.00 0.00 0.00 0.00 4.65 0.00 2.44 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 1.47 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.97 0.00 0.00 0.00 0.00 2.56 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 K alternative_donor HSPC300,I_chr2R_19915648_19915744,I_chr2R_19915648_19915903,I_chr2R_19915648_19916060 chr2R - chr2R_19915648_19915744;chr2R_19915648_19915903 chr2R_19915648_19916136 chr2R_19915548_19915647;chr2R_19916137_19916160 98.04 98.75 97.95 97.62 96.67 100.00 97.03 98.02 95.80 100.00 95.24 97.00 98.97 98.04 98.52 96.25 95.56 98.11 96.75 98.84 98.48 98.04 98.81 98.53 95.00 98.53 98.18 95.35 99.05 97.10 98.69 99.48 99.10 98.03 97.65 98.77 100.00 100.00 96.67 98.35 98.84 97.78 98.81 98.61 98.00 97.68 98.10 98.58 97.84 97.96 97.73 97.56 97.83 98.06 100.00 98.02 95.92 97.89 K intron_retention CG12945,I_chr3R_5615604_5615859,I_chr3R_5615807_5615858,RI_chr3R_5616467_5616560 chr3R - chr3R_5616467_5616560 chr3R_5616466_5616467;chr3R_5616560_5616561 chr3R_5616402_5616466;chr3R_5616561_5616629 73.91 65.00 56.25 75.76 69.23 87.50 78.57 70.00 71.43 68.18 66.67 76.92 80.00 58.33 81.25 66.67 66.67 71.43 69.23 61.54 75.00 79.31 75.00 87.50 100.00 66.67 76.67 75.86 73.91 69.57 68.75 90.00 70.27 65.52 68.18 40.54 72.73 69.57 80.77 82.93 68.75 81.40 60.00 84.62 90.91 68.00 82.35 75.00 86.11 66.67 77.27 84.21 92.86 75.00 76.47 73.33 66.67 75.00 K intron_retention glo,I_chr3R_7643675_7643727,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7643675_7643727 chr3R_7643674_7643675;chr3R_7643727_7643728 chr3R_7643585_7643674;chr3R_7643728_7643827 89.44 90.91 NA 94.12 NA NA 75.00 90.48 95.24 NA NA 93.33 92.86 100.00 81.82 84.62 75.00 NA 90.00 76.00 NA NA 90.91 70.00 NA NA 72.73 NA NA NA NA NA 75.00 75.00 66.67 100.00 NA NA 88.89 84.62 NA 92.86 100.00 NA 69.23 NA NA 90.91 76.19 100.00 NA NA NA NA 90.91 NA NA 64.71 K alternative_donor RI_chr3L_17480321_17481164,Oatp74D,chr3L_17480319_17480976.0,I_chr3L_17480594_17481164,I_chr3L_17500359_17500724 chr3L + chr3L_17480321_17481164;chr3L_17480290_17481164;chr3L_17480301_17481164 chr3L_17480594_17481164 chr3L_17481165_17481264;chr3L_17480274_17480289 44.44 NA NA 33.33 NA NA 38.46 50.00 21.74 NA NA 33.33 NA NA NA 60.00 NA 50.00 NA 30.00 NA 54.55 28.57 NA 40.00 NA 40.00 33.33 60.00 NA NA NA 60.00 25.00 NA NA 44.44 NA 50.00 44.44 NA 28.57 NA 25.00 NA 50.00 NA 54.55 38.46 NA NA NA NA NA 66.67 50.00 NA 60.00 K jcn_only_AA CaMKII,I_chr4_1059085_1060638,I_chr4_1059085_1065781,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1059064_1060638;chr4_1059061_1060638 chr4_1059085_1060638 chr4_1060639_1060704;chr4_1059054_1059060 0.00 NA NA 0.00 NA NA 0.00 7.69 2.63 NA NA 0.00 NA NA NA 3.23 NA NA 3.23 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 2.78 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K jcn_only_AA Qm,RI_chr3L_23087947_23088093,I_chr3L_23088406_23088824 chr3L - chr3L_23088312_23088374 chr3L_23088336_23088374 chr3L_23088375_23088402;chr3L_23088306_23088311 0.00 0.04 0.04 0.02 0.04 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.03 0.02 0.00 0.00 0.00 0.00 0.03 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.04 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention unc-5,E_chr2R_11238100_11240757,I_chr2R_11252444_11252570 chr2R + chr2R_11247974_11249487 chr2R_11247973_11247974;chr2R_11249487_11249488 chr2R_11247920_11247973;chr2R_11249488_11249509 0.00 0.00 NA 0.00 NA NA NA NA 10.53 0.00 0.00 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA NA K intron_retention msn,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2560296_2563817 chr3L_2560295_2560296;chr3L_2563817_2563818 chr3L_2560116_2560295;chr3L_2563818_2563917 8.08 5.88 14.89 17.31 10.81 6.56 29.63 22.64 14.52 2.63 17.74 11.40 5.41 5.13 8.64 22.22 15.00 1.54 16.13 15.48 14.00 5.63 5.11 3.52 6.00 11.90 8.54 1.83 6.00 12.86 12.50 2.22 4.96 12.86 6.32 3.17 2.58 1.76 2.45 15.07 12.12 8.08 14.63 12.28 5.88 6.06 1.90 5.66 11.93 7.46 7.77 9.21 5.88 4.92 9.38 4.76 8.16 10.00 K alternative_last_exon Pp2A-29B,I_chr2L_8367210_8367311,I_chr2L_8369561_8369715 chr2L + chr2L_8369031_8369798;chr2L_8369031_8369715 chr2L_8369031_8369222 chr2L_8369716_8370092 chr2L_8369223_8369399 chr2L_8368758_8369030 3.80 3.52 3.64 1.48 4.23 3.66 3.09 2.60 2.91 6.67 3.00 2.27 2.73 2.73 2.34 5.49 3.12 3.12 2.54 3.20 5.00 8.05 5.67 6.90 4.71 3.85 5.85 12.66 11.21 3.54 2.91 5.26 6.93 3.66 5.49 3.45 5.93 5.94 7.81 5.82 6.14 2.83 2.08 3.80 7.26 4.97 4.97 6.59 2.84 4.35 3.45 5.26 3.53 5.56 3.03 3.68 2.50 4.76 K intron_retention CG6084 chr3L - chr3L_11613766_11614313 chr3L_11613765_11613766;chr3L_11614313_11614314 chr3L_11613759_11613765;chr3L_11614314_11614522 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 4.26 0.00 NA 0.00 0.00 6.45 5.88 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 2.00 0.00 0.00 0.00 0.00 2.13 7.41 3.77 0.00 0.00 0.00 0.00 0.00 K intron_retention MED14,CG12030 chr3L + chr3L_593504_593565 chr3L_593503_593504;chr3L_593565_593566 chr3L_593246_593503;chr3L_593566_593660 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 14.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K jcn_only_AA veg,I_chr2R_12845291_12845765 chr2R + chr2R_12843183_12843248 chr2R_12843183_12843242 chr2R_12843138_12843182;chr2R_12843249_12844801 96.55 91.30 100.00 90.00 95.24 90.00 93.48 96.67 100.00 NA NA 97.62 NA 92.31 96.30 86.84 NA 100.00 NA 90.00 96.15 86.36 92.86 87.50 NA NA 94.12 100.00 NA 100.00 97.56 NA NA 100.00 100.00 100.00 97.44 100.00 96.77 93.88 95.00 98.25 95.00 94.29 NA 97.67 100.00 96.30 100.00 100.00 98.11 97.06 NA 95.45 96.55 93.33 96.97 95.65 K jcn_only_AD CG33558,I_chr2R_2813804_2817753,I_chr2R_2814327_2817753,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2816779_2817354;chr2R_2816779_2817327 chr2R_2816779_2817459 chr2R_2816679_2816778;chr2R_2817460_2817510 0.00 1.79 0.00 0.00 NA 3.57 0.00 2.13 0.89 1.82 0.00 0.98 0.00 0.00 1.69 0.00 0.00 0.00 0.00 2.20 0.00 0.00 0.00 0.00 0.00 0.00 2.44 NA 2.70 0.00 0.00 1.92 1.01 0.00 1.56 1.56 2.03 0.00 0.00 0.00 2.13 0.94 0.00 1.69 0.00 0.98 2.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 K alternative_donor cv-c,RI_chr3R_10258928_10265129,RI_chr3R_10301040_10306363,noncoding_16722,RI_chr3R_10306635_10307255 chr3R - chr3R_10306635_10307301 chr3R_10306635_10307255 chr3R_10306535_10306634;chr3R_10307302_10307304 30.77 NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA 17.24 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA K alternative_donor l(2)s5379,RI_chr2L_2228057_2229265,I_chr2L_2229012_2229265,I_chr2L_2229179_2229265 chr2L + chr2L_2228057_2229265;chr2L_2227282_2229265 chr2L_2229012_2229265 chr2L_2229266_2229365;chr2L_2227182_2227281 1.03 0.83 1.27 0.70 0.90 1.65 2.52 1.01 2.59 1.08 1.83 1.26 1.71 1.92 1.08 1.55 0.86 2.26 1.16 1.88 0.87 0.73 0.79 0.99 1.67 1.04 2.00 5.88 0.55 0.66 0.59 0.53 0.39 1.44 1.14 0.76 1.05 1.23 0.85 0.63 0.46 0.76 0.88 0.74 0.49 0.64 0.88 0.25 1.03 2.22 1.74 1.96 0.96 0.98 1.10 1.04 1.71 0.23 K intron_retention alpha-Adaptin,I_chr2L_413655_413722 chr2L - chr2L_409466_409531 chr2L_409465_409466;chr2L_409531_409532 chr2L_408076_409465;chr2L_409532_409736 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.21 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG14741 chr3R - chr3R_7899339_7900180 chr3R_7899339_7899925 chr3R_7899048_7899338;chr3R_7900181_7900195 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.33 99.60 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette B4,I_chr2L_13513474_13549131,I_chr2L_13547133_13549131,I_chr2L_13547162_13547692,I_chr2L_13547304_13549131 chr2L - chr2L_13535027_13549131 chr2L_13535027_13546910;chr2L_13547133_13549131 chr2L_13546911_13547132 chr2L_13534907_13535026;chr2L_13549132_13549231 76.92 76.92 82.35 68.00 71.43 76.92 90.48 57.69 81.08 81.82 81.82 90.91 71.43 90.00 77.78 73.91 75.00 100.00 87.50 87.50 84.62 84.00 83.33 73.68 86.67 66.67 89.47 66.67 76.67 83.33 94.12 84.62 50.00 72.00 75.00 78.95 80.95 71.43 60.87 84.62 94.12 86.21 81.82 81.48 77.27 68.97 64.71 78.12 67.86 60.87 66.67 73.33 61.54 66.67 75.00 64.71 55.00 73.91 K intron_retention CG4692 chr2R - chr2R_20487223_20487289 chr2R_20487222_20487223;chr2R_20487289_20487290 chr2R_20487140_20487222;chr2R_20487290_20487306 47.22 58.82 37.84 67.61 44.44 44.12 71.43 36.76 53.12 28.00 57.14 53.52 55.00 60.71 35.94 50.00 52.17 40.54 35.90 33.77 50.00 21.05 55.00 26.32 80.00 72.58 84.62 60.00 60.47 15.62 29.41 14.00 9.18 29.51 50.00 48.15 61.90 69.23 56.25 20.83 35.09 43.90 43.24 28.57 17.97 26.76 54.84 13.48 40.28 35.29 62.50 50.00 44.44 74.07 47.22 50.00 65.52 12.42 K intron_retention ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13419688_13422330 chr2R_13419687_13419688;chr2R_13422330_13422331 chr2R_13419376_13419687;chr2R_13422331_13422336 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.94 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.56 K intron_retention pan chr4 + chr4_90379_90461 chr4_90378_90379;chr4_90461_90462 chr4_90287_90378;chr4_90462_90475 100.00 92.31 100.00 95.65 NA 100.00 100.00 95.35 100.00 NA NA 92.00 93.75 100.00 NA 97.14 100.00 90.00 100.00 95.45 88.89 NA 88.89 NA NA 100.00 100.00 NA NA NA 100.00 NA NA 96.55 100.00 NA NA NA NA 88.89 NA 95.00 100.00 100.00 NA NA NA NA 100.00 NA 88.89 NA NA NA 100.00 NA NA NA K cassette CG3558,RI_chr2L_2995071_2997790 chr2L + chr2L_2997060_2997790 chr2L_2997060_2997491;chr2L_2997531_2997790 chr2L_2997492_2997530 chr2L_2996502_2997059;chr2L_2997791_2997890 17.89 17.42 16.18 19.21 20.69 19.05 8.22 19.46 14.15 33.82 6.00 11.70 40.26 23.26 13.67 16.53 17.89 17.76 15.04 16.03 6.47 32.14 15.15 18.75 19.10 9.47 20.83 45.16 6.82 20.92 23.91 22.94 20.91 16.30 19.35 21.69 16.25 15.58 19.03 14.29 20.43 13.51 15.73 23.62 22.73 19.71 16.08 23.23 13.64 21.88 16.67 23.08 6.25 15.87 20.49 18.92 9.09 11.56 K intron_retention Mms19 chr3R + chr3R_1060961_1061027 chr3R_1060960_1060961;chr3R_1061027_1061028 chr3R_1059515_1060960;chr3R_1061028_1061450 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG42596,RE_chr2RHet_1905131_1965444 chr2RHet + chr2RHet_1862145_1862272 chr2RHet_1862144_1862145;chr2RHet_1862272_1862273 chr2RHet_1862028_1862144;chr2RHet_1862273_1862367 67.95 NA NA NA NA NA NA NA 69.23 NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA 37.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention bmm,I_chr3L_14772123_14772190 chr3L - chr3L_14772123_14779018 chr3L_14772122_14772123;chr3L_14779018_14779019 chr3L_14772023_14772122;chr3L_14779019_14779438 6.25 6.82 0.00 8.89 13.79 7.14 10.53 10.87 8.20 0.00 0.00 11.63 18.52 16.00 12.12 13.79 7.69 10.34 15.38 5.26 6.25 0.00 3.51 3.77 6.25 0.00 2.22 0.00 11.76 0.00 0.00 NA 0.00 16.67 4.55 7.69 0.00 0.00 0.00 4.26 0.00 11.48 12.00 6.52 0.00 5.26 0.00 NA 12.50 9.52 10.00 2.70 6.67 0.00 3.57 0.00 6.67 NA K alternative_donor CG9821,I_chr3R_4644986_4645248,I_chr3R_4644986_4645577,I_chr3R_4644986_4645648,I_chr3R_4644986_4646263,RI_chr3R_4644986_4646264,RI_chr3R_4645903_4646033 chr3R - chr3R_4644986_4645248;chr3R_4644986_4646033;chr3R_4644986_4645649 chr3R_4644986_4645577 chr3R_4644886_4644985;chr3R_4646034_4646133 0.00 0.00 0.00 0.64 0.00 0.00 0.59 0.21 0.18 0.00 0.00 0.00 0.00 0.78 1.04 0.23 0.00 0.64 0.00 0.27 0.85 3.88 0.00 0.00 0.00 1.17 0.70 2.61 0.89 0.00 0.00 0.00 1.80 0.24 0.78 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 1.10 1.27 0.68 0.00 0.00 0.53 0.00 0.00 2.78 0.00 0.00 0.00 0.00 K intron_retention I_chr3R_19825840_19825904,Miro chr3R - chr3R_19860752_19861009 chr3R_19860751_19860752;chr3R_19861009_19861010 chr3R_19860087_19860751;chr3R_19861010_19861048 25.00 35.71 NA 25.00 NA NA 14.29 NA 23.81 NA 14.29 NA NA NA NA NA NA NA NA 41.18 NA NA 40.00 7.14 0.00 NA 17.65 NA NA NA NA NA NA NA NA NA NA NA 21.43 34.48 NA 11.76 NA NA NA 26.67 25.00 NA 46.15 26.32 36.84 30.77 NA 7.69 NA 28.57 4.76 30.77 K intron_retention CG5343 chr2L - chr2L_10430383_10430438 chr2L_10430382_10430383;chr2L_10430438_10430439 chr2L_10429902_10430382;chr2L_10430439_10430921 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Sdc,I_chr2R_17286819_17367595,I_chr2R_17324594_17367595 chr2R - chr2R_17286819_17367595 chr2R_17286819_17299815;chr2R_17299924_17367595 chr2R_17299816_17299923 chr2R_17286719_17286818;chr2R_17367596_17367695 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 96.00 100.00 100.00 100.00 100.00 98.55 98.63 100.00 97.62 100.00 100.00 97.22 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 100.00 97.22 100.00 100.00 95.24 98.39 100.00 97.73 96.88 100.00 100.00 100.00 100.00 K alternative_acceptor Hsc70-4,EI_chr3R_11068693_11068772 chr3R + chr3R_11068693_11070081 chr3R_11068693_11068772 chr3R_11068632_11068692;chr3R_11070082_11072336 25.00 NA NA 50.00 NA NA 16.67 28.57 40.00 NA NA 28.57 NA NA NA 50.00 NA NA NA 14.29 NA 50.00 NA NA 20.00 NA 66.67 60.00 10.00 11.11 NA 10.00 NA 50.00 NA NA 20.00 NA NA 16.67 11.11 28.57 NA NA 16.67 12.50 NA 20.00 25.00 50.00 NA NA NA NA 20.00 33.33 NA 25.00 K alternative_acceptor CG6656,RI_chr3R_17702199_17702274,CG33092 chr3R + chr3R_17702199_17702296 chr3R_17702199_17702274 chr3R_17702099_17702198;chr3R_17702297_17702306 8.42 15.00 11.11 6.67 14.29 19.05 15.79 8.11 7.89 5.00 NA 6.25 NA 6.67 12.50 18.75 17.65 4.17 0.00 5.13 6.67 8.00 8.33 7.25 12.50 NA 7.32 11.76 7.69 8.33 33.33 9.52 5.41 10.81 10.71 NA 5.38 NA 4.35 11.11 28.57 6.25 14.29 14.29 12.90 4.88 4.35 19.05 2.00 8.51 8.57 17.65 3.51 0.00 12.50 9.09 6.02 9.09 K jcn_only_AA Dip-B chr3R + chr3R_9608174_9608429 chr3R_9608174_9608416 chr3R_9608012_9608173;chr3R_9608430_9608563 6.12 7.69 4.62 5.11 6.45 7.02 1.64 7.14 5.62 4.08 4.30 4.41 5.88 3.19 5.76 5.88 6.56 5.00 5.50 5.93 7.14 6.92 6.72 4.81 6.67 3.70 9.00 8.99 6.06 2.53 3.28 7.32 3.45 6.90 8.75 8.43 1.54 9.46 5.00 4.83 6.80 4.57 6.67 4.84 6.90 9.41 11.67 7.97 6.12 8.89 0.98 7.55 6.33 8.43 6.02 5.26 6.72 8.70 K intron_retention Aut1,I_chr3L_18742839_18742896,RI_chr3L_18742839_18742911 chr3L + chr3L_18742839_18742892 chr3L_18742838_18742839;chr3L_18742892_18742893 chr3L_18742770_18742838;chr3L_18742893_18742977 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 1.20 K jcn_only_AD His4r chr3R + chr3R_10451640_10451747;chr3R_10451538_10451747 chr3R_10451564_10451747 chr3R_10451748_10451951;chr3R_10451469_10451537 1.33 0.91 2.29 1.18 1.48 2.54 2.24 1.33 1.96 0.00 1.91 1.15 2.48 1.30 4.56 2.22 2.28 0.74 1.29 1.68 1.88 0.46 1.02 0.64 0.96 1.33 1.61 2.67 3.95 1.77 1.91 0.57 1.29 1.61 0.00 0.00 1.10 0.39 0.54 3.70 0.89 1.64 1.93 0.00 0.71 2.96 0.59 1.33 0.84 2.55 1.96 0.00 2.68 0.88 0.68 1.29 0.92 2.20 K jcn_only_AD CG13551,I_chr2R_19265701_19270570 chr2R - chr2R_19270283_19270611 chr2R_19270283_19270570 chr2R_19270138_19270282;chr2R_19270612_19270645 100.00 100.00 99.71 100.00 100.00 99.69 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.61 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.80 100.00 100.00 100.00 100.00 100.00 K intron_retention CG1486 chrX + chrX_21196850_21196915 chrX_21196849_21196850;chrX_21196915_21196916 chrX_21195737_21196849;chrX_21196916_21197197 0.00 0.00 0.00 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.49 2.56 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention bon chr3R + chr3R_16435123_16435661 chr3R_16435122_16435123;chr3R_16435661_16435662 chr3R_16434948_16435122;chr3R_16435662_16435679 2.78 NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 5.56 7.69 NA NA NA NA NA NA NA NA NA 7.69 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA K alternative_donor CG11148,I_chr4_886499_886547,RI_chr4_886921_887162 chr4 - chr4_886499_886556 chr4_886499_886547 chr4_886399_886498;chr4_886557_886647 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 1.92 NA 0.00 1.11 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32174,CG33052 chr3L - chr3L_17422701_17422954 chr3L_17422700_17422701;chr3L_17422954_17422955 chr3L_17422477_17422700;chr3L_17422955_17423159 0.00 NA NA 7.14 NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA 0.00 NA 6.67 NA NA NA NA NA NA 9.52 NA NA NA NA 0.00 NA NA 0.00 NA K intron_retention Best1,I_chr3R_5991957_5995913,RI_chr3R_5993184_5995905 chr3R - chr3R_5989579_5990440 chr3R_5989578_5989579;chr3R_5990440_5990441 chr3R_5988921_5989578;chr3R_5990441_5990683 9.38 10.09 11.39 7.00 7.59 12.50 7.79 10.53 8.28 3.19 10.94 10.60 14.86 6.25 7.69 9.78 3.57 5.45 7.14 7.19 7.25 47.78 12.59 10.69 11.94 11.86 8.26 4.48 12.12 8.86 6.59 8.89 17.65 6.14 10.81 12.33 9.52 10.62 10.90 10.46 6.35 8.11 10.94 11.11 15.19 7.55 5.00 9.38 8.40 9.09 9.68 8.97 10.77 8.14 9.64 9.00 6.25 9.52 K jcn_only_AD Vha26,I_chr3R_1417761_1418260,I_chr3R_1417761_1418275,I_chr3R_1418045_1418289 chr3R + chr3R_1417761_1418289 chr3R_1418045_1418289 chr3R_1418290_1418360;chr3R_1417710_1417760 0.38 0.30 0.41 0.00 0.42 0.27 0.18 0.46 0.82 0.00 0.67 0.25 0.31 0.00 0.00 0.38 0.00 0.72 0.00 0.35 0.77 2.17 0.43 0.95 0.41 0.66 0.54 0.00 1.56 0.00 1.14 0.00 1.15 0.12 0.86 0.34 0.71 0.49 0.00 0.30 0.47 0.26 0.00 0.27 0.78 0.43 0.00 0.31 0.32 0.40 0.76 0.98 0.39 0.38 0.39 0.34 1.07 0.00 K jcn_only_AD CG3558,RI_chr2L_2995071_2997790 chr2L + chr2L_2993464_2993544;chr2L_2993410_2993544;chr2L_2993444_2993544 chr2L_2993378_2993544 chr2L_2993545_2994408;chr2L_2993028_2993377 96.37 98.28 90.14 96.30 93.62 98.11 95.65 97.92 97.45 100.00 98.11 99.09 98.53 98.59 96.77 97.60 100.00 92.59 93.10 96.95 95.83 95.29 90.77 96.30 93.94 89.74 91.30 96.55 69.91 97.85 97.01 98.46 99.12 96.00 92.11 94.55 95.35 97.50 97.78 98.48 96.43 92.91 90.57 90.80 100.00 96.26 95.45 96.07 97.78 97.37 89.66 97.73 94.12 NA 91.25 100.00 91.67 99.38 K intron_retention eIF4E-6,RI_chr3R_24852741_24852800,I_chr3R_24852751_24852800 chr3R - chr3R_24852751_24852809 chr3R_24852750_24852751;chr3R_24852809_24852810 chr3R_24852651_24852750;chr3R_24852810_24852896 25.00 NA NA NA NA NA NA 28.57 15.79 NA NA NA NA NA NA 36.36 NA NA NA 23.08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA K intron_retention opa1-like,I_chr2R_10119470_10120234,I_chr2R_10121848_10121900,I_chr2R_10122334_10122393 chr2R - chr2R_10122693_10122790 chr2R_10122692_10122693;chr2R_10122790_10122791 chr2R_10122395_10122692;chr2R_10122791_10122913 0.00 0.00 0.00 1.52 0.00 0.00 2.33 0.81 3.81 0.00 1.89 1.20 0.00 0.00 2.33 0.00 0.00 0.00 0.00 1.35 2.00 11.69 1.30 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 2.56 0.00 0.73 0.00 4.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Nap1,I_chr2R_19794246_19794473 chr2R - chr2R_19793520_19793582 chr2R_19793519_19793520;chr2R_19793582_19793583 chr2R_19793452_19793519;chr2R_19793583_19793660 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.10 0.10 0.37 0.00 0.00 0.25 0.00 0.12 0.19 K alternative_donor Atg2 chr3L + chr3L_2774487_2774567 chr3L_2774494_2774567 chr3L_2774568_2780718;chr3L_2774319_2774486 21.82 30.77 NA 25.00 NA NA 20.00 31.25 22.73 NA NA 21.43 13.33 NA 36.36 8.33 NA NA 27.27 17.24 NA 22.22 16.67 27.27 27.27 NA 42.86 50.00 33.33 25.00 18.18 NA 17.65 29.41 28.57 20.00 14.29 13.33 NA 19.35 NA 27.78 NA 23.08 NA NA NA 15.79 21.05 NA 15.79 16.67 14.29 NA 26.32 16.67 NA NA K jcn_only_AD l(2)37Cb chr2L - chr2L_19126513_19126575 chr2L_19126513_19126573 chr2L_19126376_19126512;chr2L_19126576_19126950 100.00 95.92 100.00 100.00 100.00 100.00 97.67 100.00 98.48 100.00 95.12 100.00 NA 100.00 100.00 98.08 100.00 100.00 100.00 98.95 100.00 100.00 98.55 100.00 100.00 100.00 98.18 95.65 98.53 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 98.00 100.00 100.00 97.22 96.97 97.83 97.50 100.00 100.00 100.00 98.85 92.86 98.00 90.91 100.00 100.00 94.59 100.00 97.22 100.00 K intron_retention CG6597 chr3L + chr3L_20296446_20300930 chr3L_20296445_20296446;chr3L_20300930_20300931 chr3L_20296274_20296445;chr3L_20300931_20301022 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 3.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 K intron_retention RpS8,REI_chr3R_25687741_25687920,I_chr3R_25687817_25687920,F_chr3R_25696884_25696960 chr3R + chr3R_25687741_25687920 chr3R_25687740_25687741;chr3R_25687920_25687921 chr3R_25687717_25687740;chr3R_25687921_25688020 46.15 35.71 NA 70.00 NA NA NA NA 66.67 NA NA 76.92 NA NA 77.78 66.67 NA NA NA 64.71 NA 37.50 52.38 29.41 45.45 NA 76.47 66.67 18.18 NA 17.95 66.67 NA 80.00 58.33 46.67 30.77 14.29 29.41 32.00 NA 64.71 NA NA 41.67 42.86 29.41 50.00 70.59 46.15 33.33 NA 38.10 33.33 77.78 33.33 42.86 58.82 K intron_retention Dp1 chr2R + chr2R_14306060_14306170 chr2R_14306059_14306060;chr2R_14306170_14306171 chr2R_14305082_14306059;chr2R_14306171_14306470 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.46 100.00 100.00 100.00 100.00 100.00 100.00 99.46 100.00 100.00 99.48 100.00 100.00 100.00 99.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13414489_13414718;chr2R_13413823_13414718;chr2R_13414486_13414718;chr2R_13413919_13414718 chr2R_13413922_13414718 chr2R_13414719_13414817 0.38 0.00 0.92 0.51 1.01 1.04 1.17 0.00 0.00 0.00 4.88 0.00 1.01 0.00 0.00 0.95 0.00 0.00 0.00 0.00 1.03 1.49 0.00 0.89 4.65 8.51 2.11 0.00 0.38 1.34 0.67 0.00 0.00 0.00 0.00 1.23 0.50 0.00 0.58 0.38 1.60 0.92 0.00 0.63 1.86 0.76 0.00 0.17 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.99 0.00 0.62 K alternative_acceptor TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748981_19750012 chr2R_19748984_19750012 chr2R_19750013_19750013;chr2R_19748884_19748980 53.59 NA NA 53.85 NA NA 60.00 42.86 54.55 NA NA 47.06 NA NA 53.33 43.75 60.00 60.00 45.45 42.86 NA 70.00 NA NA 75.00 58.33 NA NA 50.00 NA 42.86 41.67 45.45 50.00 NA NA NA NA 43.75 55.56 NA 55.56 NA NA NA 60.00 NA NA 58.82 NA 40.00 NA NA NA 60.00 36.36 NA 54.55 K intron_retention Ranbp16,I_chrX_15826655_15827277 chrX - chrX_15827572_15827633 chrX_15827571_15827572;chrX_15827633_15827634 chrX_15827176_15827571;chrX_15827634_15827691 15.65 19.05 8.00 13.89 12.00 10.53 20.00 17.65 13.43 12.50 5.56 17.50 10.53 5.56 17.39 27.78 14.29 19.23 21.05 16.98 4.76 13.79 16.67 NA NA 26.09 27.78 NA 19.05 0.00 20.83 NA 0.00 17.39 14.29 41.18 18.18 NA 11.54 16.67 NA 19.23 9.52 21.21 NA 6.67 NA 10.00 14.63 NA 9.52 33.33 13.33 NA 19.35 NA NA NA K jcn_only_AD CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3088120_3088191;chr3L_3088129_3088191;chr3L_3088139_3088191 chr3L_3088124_3088191 chr3L_3088192_3088663;chr3L_3087957_3088119 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.39 0.00 1.10 0.00 0.00 0.00 0.69 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 1.16 0.00 0.48 0.00 0.00 0.00 0.00 0.54 0.75 0.00 0.00 0.00 0.00 0.79 0.39 0.40 0.32 0.45 0.32 0.00 0.32 0.00 0.51 0.00 0.00 0.00 1.06 0.44 K alternative_acceptor MB8.chr3R.pasa.66,CG1091,I_chr3R_2909743_2909904,I_chr3R_2910029_2910096,RI_chr3R_2910490_2910686,RI_chr3R_2911041_2911135,RI_chr3R_2946518_2946663 chr3R - chr3R_2909743_2909904 chr3R_2909847_2909904 chr3R_2909905_2910004;chr3R_2909729_2909742 100.00 97.22 100.00 100.00 100.00 95.83 97.67 100.00 98.75 100.00 100.00 100.00 100.00 96.67 100.00 97.73 100.00 100.00 100.00 100.00 100.00 96.77 98.00 98.28 97.06 100.00 97.83 93.75 100.00 96.67 100.00 93.94 96.88 98.25 100.00 100.00 100.00 100.00 98.25 98.15 100.00 98.25 96.88 100.00 100.00 97.83 100.00 96.30 100.00 98.21 98.08 100.00 97.78 100.00 100.00 100.00 98.70 100.00 K intron_retention CtBP chr3R + chr3R_8847039_8847141 chr3R_8847038_8847039;chr3R_8847141_8847142 chr3R_8846898_8847038;chr3R_8847142_8847364 15.79 10.00 18.42 18.97 12.50 16.67 20.00 13.73 18.97 15.79 20.00 22.73 27.59 38.89 12.20 25.00 10.00 17.65 19.35 14.86 16.67 15.00 11.63 15.38 13.79 19.05 27.27 26.67 10.87 10.71 18.75 16.00 9.76 17.86 15.56 21.43 14.29 8.70 13.04 15.79 19.35 14.67 6.67 9.09 17.24 11.76 17.14 10.91 15.07 20.00 17.65 16.00 11.11 11.11 29.41 11.11 13.33 19.35 K intron_retention Edc3,I_chr3L_17520280_17520334 chr3L - chr3L_17520381_17520435 chr3L_17520380_17520381;chr3L_17520435_17520436 chr3L_17520335_17520380;chr3L_17520436_17520520 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 14.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 K intron_retention sw chrX - chrX_20106509_20106582 chrX_20106508_20106509;chrX_20106582_20106583 chrX_20106362_20106508;chrX_20106583_20106820 0.00 1.82 0.00 0.00 0.00 1.23 1.19 0.00 0.81 0.00 0.00 2.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 3.03 4.00 1.61 0.00 2.20 0.00 2.56 1.32 0.00 0.00 0.00 0.00 0.77 0.87 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.45 0.00 0.00 0.00 2.13 0.00 0.00 0.00 1.12 0.00 0.00 0.89 0.00 0.00 K alternative_donor CG10992,RI_chrX_13675767_13676018 chrX - chrX_13675767_13675872;chrX_13675767_13676018 chrX_13675767_13675842 chrX_13675699_13675766;chrX_13676019_13676118 100.00 100.00 100.00 99.71 100.00 99.58 99.70 100.00 100.00 100.00 100.00 99.78 99.23 100.00 100.00 100.00 100.00 99.49 100.00 100.00 100.00 99.66 99.74 99.73 99.49 100.00 99.61 100.00 100.00 99.44 99.55 100.00 99.49 100.00 99.53 100.00 100.00 99.60 99.74 99.68 100.00 100.00 100.00 100.00 99.48 100.00 99.66 99.28 100.00 100.00 99.66 99.51 100.00 99.50 99.68 99.59 100.00 99.31 K alternative_donor CG10249,I_chr2R_10790537_10790639 chr2R - chr2R_10791070_10791577 chr2R_10791070_10791135 chr2R_10790641_10791069;chr2R_10791578_10792956 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.03 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.85 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA 2.33 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA K alternative_acceptor Flo-2 chrX + chrX_14733457_14734915 chrX_14733457_14734905 chrX_14733442_14733456;chrX_14734916_14735052 100.00 NA 100.00 100.00 88.89 NA 100.00 93.33 100.00 NA NA 87.50 NA 100.00 91.67 100.00 100.00 100.00 100.00 90.91 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA 95.00 87.50 NA NA NA NA NA 92.86 NA NA NA NA NA 90.00 NA NA NA K cassette Tsp42Ed chr2R - chr2R_2898099_2899096 chr2R_2898099_2898167;chr2R_2898360_2899096 chr2R_2898168_2898359 chr2R_2897937_2898098;chr2R_2899097_2899359 100.00 100.00 100.00 98.84 100.00 99.36 100.00 99.57 100.00 99.12 99.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.74 100.00 99.12 99.64 100.00 100.00 99.28 100.00 100.00 99.65 99.51 100.00 100.00 99.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.59 100.00 100.00 100.00 99.42 99.29 100.00 100.00 100.00 100.00 99.51 100.00 100.00 100.00 100.00 K intron_retention CG12703 chrX + chrX_19645200_19645380 chrX_19645199_19645200;chrX_19645380_19645381 chrX_19644833_19645199;chrX_19645381_19645579 95.34 93.75 100.00 100.00 100.00 100.00 100.00 96.15 87.88 100.00 NA 96.67 100.00 100.00 92.86 95.24 90.91 100.00 NA 95.24 100.00 100.00 94.12 80.00 100.00 NA 92.86 90.00 93.33 94.74 100.00 100.00 95.45 94.74 92.31 NA 88.24 100.00 84.21 100.00 94.12 100.00 NA 100.00 100.00 93.33 92.31 100.00 96.67 91.67 94.44 90.00 87.50 91.67 100.00 90.00 92.86 96.00 K intron_retention CG32528,Alr chrX + chrX_19640765_19640843 chrX_19640764_19640765;chrX_19640843_19640844 chrX_19640675_19640764;chrX_19640844_19641115 0.00 0.00 0.00 0.00 0.65 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.36 0.00 2.41 0.00 0.00 0.00 0.00 0.65 1.56 4.38 0.00 0.00 0.00 0.00 0.00 0.95 0.79 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 K intron_retention CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2814097_2814174 chr2R_2814096_2814097;chr2R_2814174_2814175 chr2R_2814091_2814096;chr2R_2814175_2814326 34.84 NA NA NA NA NA NA NA 47.06 NA NA 33.33 NA NA NA NA NA NA NA NA NA 0.00 46.15 NA NA NA NA NA NA NA NA NA 36.36 NA NA NA 30.77 NA 31.25 33.33 NA NA NA NA NA NA NA 46.15 46.15 40.00 33.33 NA NA NA NA NA NA NA N intron_retention Bruce chr3R - chr3R_6141764_6141972 chr3R_6141763_6141764;chr3R_6141972_6141973 chr3R_6141518_6141763;chr3R_6141973_6143270 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 89.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette CG5174,F_chr2R_14309059_14311473 chr2R + chr2R_14311992_14312376;chr2R_14311992_14312844 chr2R_14311992_14312111;chr2R_14312172_14312376,chr2R_14312172_14312844 chr2R_14312112_14312171 chr2R_14311831_14311991;chr2R_14312845_14312913 42.74 44.26 56.29 29.28 49.14 47.66 18.91 30.77 34.64 36.07 22.88 23.55 41.67 43.80 43.02 55.00 34.78 43.33 38.97 38.29 28.93 14.15 42.74 44.12 45.90 32.67 47.10 56.94 48.45 49.37 46.47 52.63 50.89 38.14 33.70 43.68 42.14 45.45 45.30 45.75 36.78 37.58 44.35 35.58 65.12 47.90 41.94 53.12 32.23 56.78 40.77 46.34 37.50 39.81 35.20 45.08 34.84 30.00 K alternative_acceptor scf,CG9149,CG2469 chr3L + chr3L_1299201_1299321 chr3L_1299201_1299318 chr3L_1298684_1299200;chr3L_1299322_1300389 99.83 99.76 99.81 99.82 99.75 100.00 99.59 99.84 99.80 99.28 99.78 99.86 99.52 100.00 99.83 99.80 100.00 99.74 99.79 99.82 99.75 99.87 100.00 99.62 99.62 99.74 100.00 99.85 100.00 99.60 99.35 100.00 99.93 99.85 99.70 99.76 99.84 100.00 99.83 99.86 99.86 99.76 100.00 100.00 99.90 100.00 99.80 99.77 99.64 99.67 100.00 100.00 99.86 99.65 100.00 100.00 99.85 99.84 K intron_retention CG11737 chr3R + chr3R_4346272_4346325 chr3R_4346271_4346272;chr3R_4346325_4346326 chr3R_4345328_4346271;chr3R_4346326_4346466 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.50 NA NA 0.00 NA 0.00 0.00 6.90 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 4.00 5.56 0.00 2.04 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 6.52 0.00 0.00 0.00 NA NA 3.85 0.00 0.00 0.00 K alternative_donor Pde11,I_chr2L_18539674_18540627 chr2L - chr2L_18547045_18562882 chr2L_18547045_18562823 chr2L_18546999_18547044;chr2L_18562883_18562901 64.91 NA NA 46.15 NA NA 71.43 45.45 50.00 NA NA 77.78 NA NA NA 45.45 NA NA NA 36.36 NA NA 77.78 57.14 30.00 NA 71.43 62.50 85.71 77.78 NA NA 81.82 NA NA 66.67 55.56 NA NA 63.16 NA 61.54 NA 66.67 NA NA NA 69.57 66.67 NA 70.00 NA NA NA 50.00 NA NA NA K alternative_donor CG17883,I_chr2R_560147_560511,I_chr2R_560547_560618 chr2R + chr2R_560568_560618;chr2R_560147_560618;chr2R_560565_560618 chr2R_560547_560618 chr2R_560619_560642;chr2R_560047_560146 9.35 9.09 8.16 13.64 9.68 2.70 2.02 3.96 8.33 4.76 8.33 4.94 1.85 14.58 4.26 6.74 7.27 17.07 7.25 9.35 3.45 18.75 22.00 2.22 26.92 18.52 8.51 3.45 23.33 13.16 10.91 12.50 27.27 6.67 12.12 10.53 14.71 8.00 3.23 14.93 35.48 2.35 13.21 4.55 16.22 4.62 11.11 8.33 7.27 4.35 10.20 11.11 11.76 11.11 10.61 14.00 4.69 10.34 K intron_retention Patj,CG12022 chr3L + chr3L_1798954_1799009 chr3L_1798953_1798954;chr3L_1799009_1799010 chr3L_1798788_1798953;chr3L_1799010_1800699 45.64 47.62 42.31 62.96 55.56 56.25 43.48 53.12 35.00 33.33 44.44 35.42 NA 40.91 45.83 45.45 46.15 40.00 42.86 42.86 50.00 35.90 45.95 53.85 77.27 75.00 58.06 47.22 72.73 35.29 54.55 50.00 33.33 44.44 68.00 65.38 27.59 44.00 41.38 38.78 65.22 42.11 43.75 45.00 48.00 47.83 38.89 43.24 50.00 40.00 48.57 60.87 31.82 47.06 45.83 30.00 52.00 40.00 K intron_retention yki chr2R - chr2R_19953701_19953783 chr2R_19953700_19953701;chr2R_19953783_19953784 chr2R_19953553_19953700;chr2R_19953784_19953836 1.32 0.00 1.12 1.29 5.00 0.00 1.96 1.96 2.74 0.00 0.00 3.42 1.27 0.00 0.00 1.40 0.00 3.23 1.27 3.14 0.00 1.25 5.51 2.40 4.23 0.00 3.09 6.76 21.82 0.00 2.08 0.00 0.93 0.00 1.90 2.78 0.00 0.00 3.03 1.41 0.00 3.29 0.00 1.87 0.69 3.08 2.05 2.67 1.32 1.20 3.73 0.00 0.85 4.76 1.83 0.68 2.94 0.00 K mutually_exclusive ens,I_chr3L_4130719_4131120 chr3L - chr3L_4127163_4129650,chr3L_4129789_4131120;chr3L_4127163_4130388,chr3L_4130644_4131120 chr3L_4127163_4128307,chr3L_4128974_4131120 chr3L_4129651_4129788;chr3L_4130389_4130643 chr3L_4128308_4128973 chr3L_4126989_4127162;chr3L_4131121_4131220 2.22 1.61 2.08 1.30 2.13 2.04 1.75 1.43 0.89 4.65 1.82 1.16 2.50 2.27 1.92 3.23 2.04 2.70 2.33 1.09 2.22 0.92 2.02 2.78 1.64 2.08 2.74 5.45 5.00 1.54 1.59 5.56 2.44 1.27 3.51 2.70 0.87 2.44 3.49 0.89 12.20 1.80 4.76 2.38 5.17 3.70 4.65 2.30 1.18 2.94 1.14 1.67 4.65 3.33 1.85 1.85 3.57 4.35 K intron_retention CG10353,I_chrX_11775936_11778830,I_chrX_11778617_11778830,RI_chrX_11780885_11780988 chrX - chrX_11777655_11778830 chrX_11777654_11777655;chrX_11778830_11778831 chrX_11777235_11777654;chrX_11778831_11778854 20.00 NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA 14.29 NA NA 7.14 NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.00 NA K intron_retention quemao,I_chr3L_7341776_7344368 chr3L + chr3L_7341776_7341962 chr3L_7341775_7341776;chr3L_7341962_7341963 chr3L_7341676_7341775;chr3L_7341963_7342117 8.70 8.70 4.23 2.29 11.11 4.55 37.82 5.62 6.50 1.75 20.83 8.82 6.35 4.35 10.53 4.92 7.69 8.93 8.65 8.33 9.52 24.44 15.38 10.00 13.33 5.00 21.57 16.39 11.34 5.88 6.72 7.55 11.84 5.88 14.29 15.79 7.14 12.90 10.91 8.11 12.68 9.92 4.62 16.44 1.72 5.31 10.00 6.21 9.09 10.26 14.63 3.70 3.85 3.33 8.99 10.71 7.55 3.85 K alternative_donor vlc chr2R + chr2R_1589953_1590371;chr2R_1589894_1590371;chr2R_1589799_1590371;chr2R_1589805_1590371;chr2R_1590318_1590371;chr2R_1589807_1590371;chr2R_1589722_1590371;chr2R_1589693_1590371 chr2R_1590294_1590371 chr2R_1590372_1590451;chr2R_1589612_1589692 3.03 2.94 2.56 3.03 0.00 8.00 1.82 3.03 2.53 0.00 3.85 2.67 4.88 4.65 5.71 4.29 3.23 12.50 4.17 2.94 7.41 0.00 4.55 2.86 0.00 2.63 5.26 0.00 14.29 0.00 2.17 8.33 4.35 5.06 4.55 4.17 0.00 0.00 0.00 5.26 0.00 2.70 5.26 3.33 0.00 9.52 0.00 10.00 2.44 0.00 2.08 7.41 0.00 0.00 3.70 4.35 0.00 10.53 K jcn_only_AA dgt6 chr3R - chr3R_24954603_24954668 chr3R_24954619_24954668 chr3R_24954669_24955189;chr3R_24954306_24954602 0.00 0.00 3.64 0.00 2.70 2.70 0.00 0.00 4.40 0.00 0.00 2.30 0.00 0.00 0.00 1.23 2.38 2.22 2.60 2.21 0.00 0.00 0.00 1.59 2.78 1.85 1.32 0.00 1.82 0.00 0.00 0.00 0.00 2.30 0.00 0.00 1.85 4.35 0.00 0.00 0.00 0.84 1.92 0.00 0.00 0.00 2.70 0.00 0.96 1.32 1.96 0.00 0.00 0.00 1.85 0.00 1.64 1.16 K alternative_acceptor CG4360 chr3R - chr3R_16151875_16152037 chr3R_16151951_16152037 chr3R_16152038_16152520;chr3R_16150089_16151874 25.19 25.56 37.50 42.44 44.12 45.63 46.21 32.76 27.44 17.22 42.70 26.80 31.58 37.50 35.90 49.07 39.47 40.48 41.84 27.29 43.68 25.40 26.67 22.26 20.83 40.00 22.64 23.55 29.89 17.95 45.16 13.43 12.72 32.16 21.64 25.00 20.45 21.67 20.67 21.14 14.29 24.41 33.68 19.38 13.28 13.04 23.00 9.23 25.30 24.42 21.80 25.19 17.12 20.87 41.44 21.43 20.99 10.26 K intron_retention Prat chr3R - chr3R_3737336_3737415 chr3R_3737335_3737336;chr3R_3737415_3737416 chr3R_3735310_3737335;chr3R_3737416_3737540 2.63 NA NA NA NA NA NA 0.00 0.00 NA NA 8.33 NA NA NA NA NA NA NA 5.26 NA NA 11.11 10.53 0.00 NA 53.85 92.86 26.32 NA NA NA NA NA NA NA 0.00 NA 23.53 0.00 NA 0.00 NA NA NA NA NA 0.00 12.50 NA NA NA NA NA NA NA 0.00 0.00 K jcn_only_AD Fs(2)Ket,I_chr2L_20734991_20735252,I_chr2L_20735091_20735305,I_chr2L_20735170_20735252,I_chr2L_20738976_20749527 chr2L + chr2L_20735091_20735252;chr2L_20734991_20735252 chr2L_20735170_20735252 chr2L_20735253_20735352;chr2L_20734943_20734990 2.67 1.79 2.70 5.49 1.72 1.79 2.91 3.82 4.38 NA 2.56 6.25 5.26 4.05 2.60 3.88 1.23 3.08 5.00 2.91 4.26 0.00 1.22 2.63 0.00 0.00 0.00 9.68 NA 2.38 2.33 NA 0.00 1.50 2.94 0.00 8.70 0.00 3.57 4.84 NA 3.57 3.28 2.17 NA 3.70 0.00 3.57 2.70 4.55 1.43 4.76 0.00 0.00 2.35 0.00 0.00 18.18 K alternative_donor Vap-33-1 chrX + chrX_3843206_3843513;chrX_3843210_3843513;chrX_3843099_3843513;chrX_3843214_3843513 chrX_3843406_3843513 chrX_3843514_3843746;chrX_3843030_3843098 100.00 100.00 100.00 96.39 100.00 95.35 98.96 96.94 96.75 100.00 100.00 98.81 98.48 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 92.31 95.45 95.65 100.00 96.49 100.00 100.00 95.00 100.00 98.36 100.00 100.00 97.09 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.90 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 91.43 100.00 100.00 100.00 100.00 100.00 97.83 100.00 K alternative_donor larp,F_chr3R_24151542_24153876,I_chr3R_24160430_24160932,I_chr3R_24160430_24160971,RI_chr3R_24160430_24161527 chr3R - chr3R_24160430_24161729;chr3R_24160430_24160932;chr3R_24160430_24160971;chr3R_24160430_24160979;chr3R_24160430_24161939;chr3R_24160430_24161527 chr3R_24160430_24160975 chr3R_24160330_24160429;chr3R_24161940_24162125 8.33 1.28 6.52 4.14 6.67 8.11 4.58 4.07 6.45 8.33 4.92 8.52 6.58 5.62 6.82 6.62 7.69 8.33 6.52 6.88 7.35 9.90 9.65 9.09 10.53 8.11 6.19 4.27 16.00 10.13 7.29 13.79 7.24 8.12 9.09 11.84 9.47 8.70 9.00 10.85 9.62 8.24 9.38 16.44 11.36 11.67 5.88 12.40 9.49 15.62 10.78 10.67 11.67 12.12 7.69 6.52 4.26 13.40 K jcn_only_AA Nup160 chr2L + chr2L_11124143_11124208 chr2L_11124143_11124195 chr2L_11124040_11124142;chr2L_11124209_11124687 100.00 100.00 100.00 100.00 NA 100.00 97.62 100.00 98.78 100.00 100.00 97.92 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 96.15 NA 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 NA 96.00 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA K alternative_donor CG5059,I_chr3L_20509233_20511440 chr3L - chr3L_20509233_20510360 chr3L_20509233_20509798 chr3L_20509133_20509232;chr3L_20510361_20510423 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K cassette Taf1 chr3R + chr3R_2480387_2480930 chr3R_2480387_2480710;chr3R_2480804_2480930 chr3R_2480711_2480803 chr3R_2480192_2480386;chr3R_2480931_2481770 5.13 6.25 4.65 3.12 0.00 6.25 0.00 0.00 3.90 5.56 0.00 5.00 0.00 3.45 2.04 4.65 3.70 5.41 4.65 3.12 0.00 36.21 12.77 10.00 3.45 6.25 6.12 11.11 12.07 9.76 2.44 9.09 5.81 1.67 5.26 11.11 8.51 4.00 8.06 7.46 3.03 6.85 0.00 15.15 14.86 4.48 5.13 5.41 4.00 5.88 4.08 7.41 2.56 6.12 5.56 4.26 5.77 2.61 K intron_retention CG4210 chr3R + chr3R_11040088_11040147 chr3R_11040087_11040088;chr3R_11040147_11040148 chr3R_11040019_11040087;chr3R_11040148_11040215 2.59 1.39 2.04 2.33 0.00 0.00 4.08 4.00 2.53 0.00 1.37 4.44 0.00 3.12 3.16 3.75 0.00 2.82 3.49 2.59 0.00 1.39 0.00 1.32 0.00 0.00 8.86 20.75 6.02 0.00 0.00 3.75 1.98 3.17 0.00 3.70 3.85 2.82 2.08 1.68 5.00 0.00 0.00 0.00 4.46 3.85 0.00 5.48 4.13 3.57 2.63 0.00 7.50 0.00 4.12 2.60 2.99 3.31 K intron_retention CG12054,chr3R_27047285_27048081.0 chr3R + chr3R_27047188_27051534 chr3R_27047187_27047188;chr3R_27051534_27051535 chr3R_27047070_27047187;chr3R_27051535_27051798 6.67 5.71 5.13 9.09 6.25 2.50 10.00 6.25 8.54 9.09 6.67 10.00 5.13 3.33 5.00 7.14 5.88 5.71 5.71 11.43 0.00 38.46 5.56 0.00 6.00 6.98 14.29 6.67 19.05 6.25 13.64 NA 0.00 3.39 9.52 4.44 8.70 7.32 7.02 4.62 NA 6.85 10.71 6.67 15.79 6.06 4.55 4.44 4.62 9.09 9.26 12.50 7.69 9.09 4.76 13.33 15.38 0.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2813977;chr2R_2814097_2814174;chr2R_2814327_2816013;chr2R_2816342_2816577;chr2R_2816779_2817354;chr2R_2817604_2817753 chr2R_2813978_2814096;chr2R_2814175_2814326;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817355_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor I_chr3L_18664773_18665233,GNBP2,I_chr3L_18667579_18667644 chr3L - chr3L_18668078_18668318;chr3L_18668078_18668478 chr3L_18668078_18668437 chr3L_18667645_18668077;chr3L_18668479_18668494 8.11 0.00 5.56 8.11 8.33 18.75 3.92 4.55 6.00 NA 0.00 15.79 15.79 10.53 0.00 0.00 19.05 15.38 7.69 16.28 11.11 9.09 6.67 0.00 0.00 11.11 0.00 0.00 0.00 14.29 11.11 11.11 20.00 9.38 0.00 12.50 6.25 0.00 8.33 0.00 16.67 13.79 0.00 21.43 0.00 0.00 18.75 9.09 8.89 0.00 7.69 14.29 NA 0.00 14.29 13.33 0.00 0.00 K intron_retention CG11875,I_chr3R_21078958_21079044 chr3R + chr3R_21073829_21073894 chr3R_21073828_21073829;chr3R_21073894_21073895 chr3R_21073681_21073828;chr3R_21073895_21074303 1.82 1.92 0.00 0.00 0.00 4.65 0.00 0.00 2.04 14.29 0.00 0.00 0.00 0.00 1.82 4.65 0.00 4.76 0.00 3.30 0.00 NA 1.47 1.54 3.70 3.45 0.00 0.00 8.33 4.00 12.20 0.00 8.70 0.00 0.00 9.09 5.08 3.28 2.02 1.54 NA 3.66 5.56 0.00 8.70 3.28 2.44 0.00 2.74 2.63 1.54 6.25 0.00 1.33 0.00 5.71 2.50 0.00 K intron_retention CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_239517_239863 chr4_239516_239517;chr4_239863_239864 chr4_239079_239516;chr4_239864_239916 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor MED26,I_chr4_807836_808040,I_chr4_807836_808089 chr4 - chr4_807836_808040;chr4_807836_808077 chr4_807836_808006 chr4_807736_807835;chr4_808078_808140 3.03 4.00 0.00 14.93 0.00 3.85 8.82 2.78 4.08 5.56 7.14 3.23 3.03 6.06 0.00 1.33 4.17 8.70 2.78 6.67 0.00 0.00 0.00 8.00 0.00 0.00 7.89 3.85 1.89 0.00 0.00 0.00 2.13 4.48 0.00 6.67 NA 12.50 NA 0.00 3.45 3.70 3.70 3.85 NA 0.00 0.00 1.45 6.76 0.00 3.45 0.00 8.33 NA 0.00 NA NA 1.11 K jcn_only_AD Sply chr2R - chr2R_12979029_12979314 chr2R_12979029_12979298 chr2R_12978864_12979028;chr2R_12979315_12979407 0.00 0.00 3.51 0.00 0.00 1.52 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 1.49 0.00 2.22 1.96 0.95 0.00 2.44 4.35 0.00 3.70 0.00 0.00 0.00 10.87 0.00 1.39 0.00 0.00 0.00 0.00 2.44 0.00 0.00 3.39 1.22 0.00 0.85 1.75 0.00 0.00 0.00 0.00 3.57 0.00 0.00 2.44 4.35 0.00 0.00 1.59 0.00 0.00 1.45 K alternative_donor gish chr3R + chr3R_12100608_12100675;chr3R_12100604_12100675 chr3R_12100598_12100675 chr3R_12100676_12100891;chr3R_12100535_12100597 1.83 1.00 0.00 2.61 1.45 1.11 2.26 2.65 1.91 2.74 5.80 2.30 1.32 2.33 1.80 1.83 1.30 1.37 2.13 3.91 2.82 0.00 1.43 1.60 3.75 0.00 1.43 1.75 1.33 3.96 4.17 2.04 3.47 2.61 1.92 1.03 0.87 0.91 0.61 4.12 2.61 2.30 1.47 1.75 1.75 3.03 1.22 5.69 1.28 1.47 1.34 2.47 7.55 1.64 3.54 5.19 0.00 5.48 K jcn_only_AA ras chrX + chrX_10639523_10639804 chrX_10639523_10639710 chrX_10639459_10639522;chrX_10639805_10639997 100.00 NA 100.00 100.00 100.00 100.00 97.30 98.33 100.00 NA 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 95.83 96.55 100.00 96.30 NA 100.00 100.00 NA NA 100.00 97.22 100.00 NA 96.97 100.00 100.00 NA 100.00 100.00 96.15 NA 96.30 100.00 NA 98.55 100.00 100.00 100.00 96.43 NA 97.87 100.00 100.00 100.00 K intron_retention rok,RI_chrX_16526333_16526477 chrX - chrX_16526947_16530254 chrX_16526946_16526947;chrX_16530254_16530255 chrX_16526801_16526946;chrX_16530255_16530394 1.61 2.35 0.00 0.00 0.00 0.00 1.19 0.00 1.15 4.84 5.88 0.00 0.00 0.00 1.28 0.00 0.00 3.28 0.00 0.71 9.80 4.20 1.56 0.00 0.00 0.00 3.08 4.65 12.86 2.47 2.78 2.38 1.90 0.00 0.00 1.19 3.03 2.06 1.39 3.33 0.00 1.30 3.28 2.78 5.26 3.12 4.65 1.89 1.80 4.88 1.96 0.00 1.92 0.00 0.00 5.71 5.41 1.61 K intron_retention ca,CG7802 chr3R + chr3R_25633325_25633526 chr3R_25633324_25633325;chr3R_25633526_25633527 chr3R_25632911_25633324;chr3R_25633527_25634128 3.70 0.00 0.00 17.50 4.00 3.33 0.00 6.25 4.84 5.56 3.45 4.00 0.00 0.00 13.33 0.00 3.85 6.67 9.09 9.80 3.45 14.10 4.44 5.80 3.85 3.45 12.50 9.09 5.17 7.35 3.23 3.33 4.29 2.94 4.88 2.90 2.25 1.79 4.40 3.70 0.00 4.48 0.00 4.65 NA 0.00 0.00 3.70 4.76 0.00 6.25 0.00 3.03 0.00 4.88 0.00 0.00 NA K intron_retention CG1316,TfIIEbeta chr3L + chr3L_4287212_4287283 chr3L_4287211_4287212;chr3L_4287283_4287284 chr3L_4287038_4287211;chr3L_4287284_4287388 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 4.55 0.00 6.67 NA NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 12.50 K alternative_donor RpL15 chr3LHet + chr3LHet_2397859_2398127;chr3LHet_2397925_2398127;chr3LHet_2397992_2398127;chr3LHet_2398060_2398127;chr3LHet_2397841_2398127;chr3LHet_2398002_2398127;chr3LHet_2397820_2398127;chr3LHet_2398053_2398127 chr3LHet_2398018_2398127 chr3LHet_2398128_2398454;chr3LHet_2397802_2397819 3.12 9.52 2.17 1.38 0.00 3.33 9.72 1.09 7.81 4.17 4.55 5.36 3.70 11.11 0.78 6.90 1.23 3.33 1.04 1.61 0.00 1.45 14.81 13.04 16.67 3.12 21.43 3.21 5.04 2.50 0.94 0.87 0.46 1.57 2.38 8.57 5.56 7.69 16.67 0.19 1.47 1.06 1.56 0.44 0.98 2.45 11.11 0.85 2.15 26.09 13.04 11.76 0.49 10.53 2.41 7.69 10.00 0.17 K alternative_donor Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_137257_137445 chr4_137257_137311 chr4_137167_137256;chr4_137446_139127 100.00 100.00 100.00 98.80 100.00 100.00 98.96 99.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 93.33 100.00 NA 91.67 100.00 100.00 100.00 100.00 98.73 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor Atet,chr2L_4334987_4335394.0,chr2L_4335788_4336447.0 chr2L + chr2L_4334440_4336449;chr2L_4334105_4336449;chr2L_4334031_4336449 chr2L_4334111_4336449 chr2L_4336450_4336957;chr2L_4333936_4334030 6.82 5.26 24.14 6.38 7.69 24.00 10.34 2.44 2.13 11.11 13.33 6.12 7.14 6.90 11.43 11.36 5.56 4.55 9.09 3.70 5.88 5.00 6.90 6.90 4.35 3.57 6.38 6.67 11.48 5.56 3.85 16.67 2.63 7.32 6.67 2.94 5.26 11.76 10.00 7.02 7.32 12.24 4.76 2.56 6.90 3.77 12.00 6.82 8.16 4.35 3.23 6.25 9.09 7.69 5.71 15.00 14.29 2.78 K intron_retention CG5359 chr3R - chr3R_5826088_5826294 chr3R_5826087_5826088;chr3R_5826294_5826295 chr3R_5825900_5826087;chr3R_5826295_5826603 5.00 NA NA NA NA NA NA 0.00 20.00 NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA 0.00 NA NA NA 10.53 NA NA NA NA NA NA NA 0.00 NA NA 14.29 NA NA NA NA NA NA 10.00 0.00 NA NA NA 0.00 NA NA 0.00 14.29 K alternative_acceptor msps,I_chr3R_11877071_11877796 chr3R + chr3R_11885098_11885185;chr3R_11885098_11885182 chr3R_11885098_11885206 chr3R_11884965_11885097;chr3R_11885207_11885406 41.67 35.00 30.00 36.84 50.00 50.00 38.10 40.91 46.15 28.57 28.57 34.62 33.33 40.00 50.00 40.00 50.00 43.75 45.45 50.00 46.67 36.00 50.00 35.48 33.33 50.00 54.55 45.45 37.50 47.37 50.00 42.86 41.18 48.00 38.46 31.82 43.48 47.83 48.15 35.29 42.86 41.67 40.00 41.38 45.45 33.33 53.57 30.43 42.86 41.67 40.00 33.33 52.94 57.14 33.33 44.44 57.14 33.33 K intron_retention CG8008,I_chr2R_5046791_5046840,CG8046 chr2R - chr2R_5048456_5048540 chr2R_5048455_5048456;chr2R_5048540_5048541 chr2R_5048346_5048455;chr2R_5048541_5048542 29.70 NA NA NA NA NA NA 33.33 30.00 NA NA NA NA NA NA NA NA NA NA 29.41 NA NA NA NA NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG8184,I_chrX_15620707_15620769 chrX + chrX_15617158_15617265;chrX_15617191_15617265 chrX_15617113_15617265 chrX_15617266_15618411;chrX_15615597_15617112 5.39 0.00 23.81 NA 17.39 6.90 10.00 0.00 3.51 2.08 NA 0.00 NA 10.71 6.06 3.12 NA 9.52 0.00 1.32 3.85 12.77 5.77 9.09 NA NA 7.69 4.88 5.66 4.08 9.52 NA 6.67 3.92 2.50 NA 2.94 0.00 4.35 6.31 NA 8.20 5.00 6.15 0.00 7.89 4.00 1.90 10.00 NA 5.13 4.00 9.68 NA 7.69 NA NA 8.00 K intron_retention Sodh-2 chr3R + chr3R_6703370_6703423 chr3R_6703369_6703370;chr3R_6703423_6703424 chr3R_6703151_6703369;chr3R_6703424_6703545 75.76 59.09 76.47 82.14 60.00 92.31 91.67 80.00 68.57 76.92 71.43 64.71 61.54 75.00 66.67 95.00 91.67 69.23 83.33 75.00 84.62 93.04 72.22 77.08 70.73 91.67 83.02 92.00 76.32 64.00 98.25 69.23 75.68 78.26 85.29 90.48 76.92 70.45 78.46 73.58 67.86 82.14 66.67 73.17 65.31 77.27 75.76 52.38 76.67 85.45 79.59 70.83 73.08 74.36 77.78 71.79 58.62 62.50 K intron_retention I_chr2L_476332_525391,ush chr2L + chr2L_537750_537862 chr2L_537749_537750;chr2L_537862_537863 chr2L_537549_537749;chr2L_537863_539246 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 K jcn_only_AD Ssadh,RI_chr3R_21451890_21451963,I_chr3R_21452371_21452464,I_chr3R_21452407_21452453 chr3R - chr3R_21452368_21452464 chr3R_21452368_21452453 chr3R_21452307_21452367;chr3R_21452465_21452553 96.08 95.00 NA NA NA NA NA 95.24 96.15 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 88.46 95.00 NA NA 92.31 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 91.30 96.00 95.00 NA 100.00 NA NA NA 100.00 96.00 NA 96.00 NA 100.00 NA NA 95.45 86.36 NA 100.00 NA K intron_retention dgt5 chr2R - chr2R_8353530_8353595 chr2R_8353529_8353530;chr2R_8353595_8353596 chr2R_8353176_8353529;chr2R_8353596_8353783 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10353,I_chrX_11775936_11778830,I_chrX_11778617_11778830,RI_chrX_11780885_11780988 chrX - chrX_11775936_11776142 chrX_11775935_11775936;chrX_11776142_11776143 chrX_11775836_11775935;chrX_11776143_11776208 35.29 27.78 36.84 45.00 NA 34.62 NA 40.00 30.00 NA NA 33.33 45.45 38.89 36.36 38.46 50.00 72.73 60.00 29.41 29.41 50.00 29.63 30.43 33.33 NA 54.55 NA 26.47 27.27 43.24 36.36 26.67 33.33 20.00 26.92 40.00 42.11 42.31 35.90 25.00 35.56 NA 35.29 33.33 24.00 42.86 32.31 29.27 53.85 43.33 NA 33.33 25.00 33.33 38.89 60.00 23.08 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2389980 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2389073;chrX_2389272_2389980 chrX_2387584_2387709;chrX_2388437_2388670;chrX_2389074_2389271 chrX_2387149_2387248;chrX_2389981_2390066 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA 66.67 NA NA NA 75.00 100.00 NA NA NA NA NA 100.00 NA NA NA K jcn_only_AD Indy chr3L - chr3L_18825085_18833472 chr3L_18825085_18833375 chr3L_18825047_18825084;chr3L_18833473_18833593 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA 1.69 NA NA 0.00 NA 0.00 0.00 NA 1.18 0.00 4.08 0.00 0.00 0.00 NA 1.05 NA 0.00 NA 0.00 NA 0.00 NA 3.23 3.33 K jcn_only_AA gish chr3R + chr3R_12100604_12100675;chr3R_12100604_12100709 chr3R_12100604_12100684 chr3R_12100535_12100603;chr3R_12100710_12100891 0.00 NA NA NA NA NA NA NA 3.85 NA NA 5.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 N intron_retention CrebA,I_chr3L_15541841_15542648 chr3L + chr3L_15543697_15544191 chr3L_15543696_15543697;chr3L_15544191_15544192 chr3L_15543247_15543696;chr3L_15544192_15546314 2.99 6.25 0.00 9.52 NA 0.00 NA 7.41 0.00 NA NA 3.70 NA NA 7.14 NA NA NA NA 7.27 NA 14.29 0.00 3.85 0.00 NA NA 0.00 NA NA NA 0.00 12.50 4.35 NA NA 2.27 0.00 0.00 0.00 NA 5.71 NA NA 4.35 NA NA NA 0.00 NA 4.00 NA 0.00 NA NA NA 0.00 15.38 K cassette cwo,noncoding_15870 chr3R + chr3R_6215160_6223084 chr3R_6215160_6222426;chr3R_6222543_6223084 chr3R_6222427_6222542 chr3R_6214846_6215159;chr3R_6223085_6223406 70.00 50.00 92.31 94.44 80.00 90.00 31.25 73.91 69.70 78.95 61.11 56.52 60.00 70.00 91.67 69.57 83.33 64.29 80.00 74.07 72.73 65.85 74.07 77.27 57.14 64.29 68.00 78.95 52.17 73.08 75.00 80.00 81.58 83.33 61.11 59.09 74.29 70.83 59.09 78.05 71.43 64.52 66.67 66.67 75.00 55.56 75.00 62.50 68.00 85.71 77.27 80.00 66.67 55.56 61.11 69.23 64.29 62.50 K intron_retention CG9232,cort chr2L - chr2L_6667292_6667360 chr2L_6667291_6667292;chr2L_6667360_6667361 chr2L_6667086_6667291;chr2L_6667361_6667530 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr2R_16518342_16520460,I_chr2R_16518620_16518916,RI_chr2R_16520388_16520855,rig chr2R - chr2R_16521874_16521935 chr2R_16521873_16521874;chr2R_16521935_16521936 chr2R_16521394_16521873;chr2R_16521936_16522193 0.00 0.00 0.00 6.12 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor InR,MIP08447,RI_chr3R_17441286_17441388 chr3R - chr3R_17429296_17444743 chr3R_17429296_17444448 chr3R_17428758_17429295;chr3R_17444744_17444758 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 91.67 100.00 93.33 100.00 NA 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 NA 96.97 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 94.44 100.00 100.00 NA 100.00 NA NA NA K intron_retention pho,I_chr4_1193830_1194784,EI_chr4_1193830_1195360,RI_chr4_1193830_1195384,I_chr4_1193830_1201673 chr4 - chr4_1194724_1194784 chr4_1194723_1194724;chr4_1194784_1194785 chr4_1194432_1194723;chr4_1194785_1194884 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 3.28 NA 0.00 0.00 0.00 0.00 0.00 1.56 0.00 4.17 3.85 0.00 NA NA 0.00 4.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 1.59 NA 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention dlg1,I_chrX_11298230_11299306 chrX + chrX_11294866_11299306 chrX_11294865_11294866;chrX_11299306_11299307 chrX_11294821_11294865;chrX_11299307_11299406 0.00 0.00 0.00 0.00 0.00 0.00 16.00 0.00 4.76 0.00 NA 0.00 0.00 1.59 1.75 2.63 0.00 0.00 0.00 1.26 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor puc,CG7878,I_chr3R_3952846_3953762 chr3R + chr3R_3931818_3933961 chr3R_3931818_3933953 chr3R_3931090_3931817;chr3R_3933962_3934100 100.00 100.00 100.00 98.86 100.00 98.70 100.00 98.85 100.00 100.00 100.00 100.00 98.28 100.00 100.00 100.00 100.00 98.55 100.00 100.00 100.00 100.00 100.00 100.00 98.57 100.00 100.00 98.61 98.94 100.00 100.00 100.00 98.73 99.23 100.00 100.00 99.17 100.00 98.90 100.00 100.00 100.00 100.00 98.73 100.00 98.67 100.00 99.02 100.00 100.00 99.24 100.00 100.00 100.00 100.00 98.04 100.00 100.00 K intron_retention CG10703,CG17184 chr3R - chr3R_7054144_7054211 chr3R_7054143_7054144;chr3R_7054211_7054212 chr3R_7053841_7054143;chr3R_7054212_7056036 2.88 0.00 3.64 8.00 2.04 0.00 3.70 4.08 7.84 4.08 2.63 4.71 0.00 0.00 0.00 0.00 0.00 0.00 2.33 3.85 0.00 3.23 2.15 6.06 8.47 0.00 11.88 8.33 16.42 6.67 8.82 1.79 5.17 0.00 0.00 10.64 4.05 1.05 2.48 7.29 6.00 4.12 0.00 2.35 5.41 2.88 2.17 0.00 2.86 6.90 3.09 3.64 0.00 2.53 0.00 3.81 4.84 0.00 K intron_retention CG10026 chr2L + chr2L_19456184_19456408 chr2L_19456183_19456184;chr2L_19456408_19456409 chr2L_19455673_19456183;chr2L_19456409_19456568 34.84 NA NA 63.64 NA 30.77 NA 31.25 29.63 NA NA 33.33 58.33 30.77 46.67 41.67 NA NA NA 30.77 NA NA NA 36.36 NA NA NA NA NA NA NA NA 28.57 41.67 NA NA NA NA NA 25.00 NA 47.06 NA NA NA NA NA NA 45.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor Pfrx,I_chrX_19390217_19400515,RI_chrX_19390217_19403850,RI_chrX_19392914_19400518,RI_chrX_19399882_19400518,I_chrX_19400112_19400515,RI_chrX_19400112_19400518,I_chrX_19400271_19400518 chrX + chrX_19400271_19400515;chrX_19400271_19400325 chrX_19400271_19400518 chrX_19400171_19400270;chrX_19400519_19400615 0.00 0.00 20.00 NA NA NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 5.88 NA NA 0.00 NA NA 0.00 20.00 0.00 NA NA 20.00 NA 0.00 0.00 NA NA NA NA 12.50 NA NA 0.00 NA 16.67 NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 25.00 16.67 10.00 K intron_retention CG14619,RI_chrX_21860097_21868647,I_chrX_21865109_21865522,I_chrX_21869837_21869915 chrX + chrX_21867395_21868000 chrX_21867394_21867395;chrX_21868000_21868001 chrX_21867326_21867394;chrX_21868001_21868211 42.86 NA NA 63.64 NA NA NA 42.86 30.00 NA NA 56.25 NA NA NA NA NA 30.77 NA 61.54 NA 25.00 NA NA NA NA NA NA NA 35.71 NA NA 41.67 53.85 NA NA 26.67 NA NA NA NA NA NA NA NA NA NA NA 43.75 NA 50.00 NA NA NA NA NA NA NA K intron_retention CG6700 chr2L - chr2L_10838234_10838839 chr2L_10838233_10838234;chr2L_10838839_10838840 chr2L_10837878_10838233;chr2L_10838840_10839469 100.00 100.00 100.00 98.39 100.00 100.00 98.77 98.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K multi_cassette lap,I_chr3R_3017854_3019314 chr3R + chr3R_3017854_3019314 chr3R_3017854_3018261;chr3R_3018377_3018442;chr3R_3018693_3019314 chr3R_3018262_3018376;chr3R_3018443_3018692 chr3R_3017754_3017853;chr3R_3019315_3019410 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N jcn_only_AA tral,I_chr3L_12512171_12512251 chr3L + chr3L_12508673_12509676 chr3L_12508673_12509658 chr3L_12508464_12508672;chr3L_12509677_12510159 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 73.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention I_chr3L_252776_253313,Tudor-SN chr3L - chr3L_262819_264117 chr3L_262818_262819;chr3L_264117_264118 chr3L_261978_262818;chr3L_264118_264354 2.74 2.88 1.29 1.52 2.04 2.80 1.51 1.96 1.81 5.31 0.00 3.49 0.78 1.96 1.76 2.74 1.61 1.94 1.65 2.06 1.94 12.20 2.48 2.26 3.29 0.00 2.06 6.37 5.13 5.11 10.74 5.88 6.03 2.02 2.68 7.32 4.15 2.05 1.99 4.95 4.35 1.98 0.00 2.48 7.14 4.17 4.20 8.57 3.40 3.06 2.17 4.26 5.83 4.30 2.26 3.82 3.39 9.71 K alternative_donor Rad17,RI_chr3R_10488039_10488120 chr3R - chr3R_10488039_10488124 chr3R_10488039_10488120 chr3R_10487939_10488038;chr3R_10488125_10488220 9.40 NA NA NA NA NA NA 13.33 15.38 NA NA 0.00 NA NA NA 6.25 NA NA 7.69 11.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA K intron_retention I_chr2R_19265701_19270570,CG30414,CG3530,CG3520 chr2R - chr2R_19272473_19272527 chr2R_19272472_19272473;chr2R_19272527_19272528 chr2R_19272225_19272472;chr2R_19272528_19272570 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 3.33 0.00 N jcn_only_AD noncoding_4622,CE_chr2R_2237053_2237111 chr2R - chr2R_2237036_2237090;chr2R_2237036_2237093 chr2R_2237036_2237086 chr2R_2236997_2237035;chr2R_2237094_2237159 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Taf6 chr3L + chr3L_19594250_19594309 chr3L_19594249_19594250;chr3L_19594309_19594310 chr3L_19594013_19594249;chr3L_19594310_19594484 96.43 96.43 96.00 100.00 94.44 95.00 100.00 96.43 91.89 100.00 94.74 97.62 94.12 100.00 96.15 96.00 92.86 93.75 94.74 98.11 100.00 89.47 94.74 95.00 97.06 95.24 92.11 96.43 97.56 96.77 100.00 97.30 96.08 96.00 96.67 97.67 97.87 96.88 97.96 100.00 100.00 97.67 100.00 96.30 92.68 92.86 93.33 89.66 97.62 96.49 91.49 100.00 100.00 98.00 95.65 94.74 95.65 96.43 K alternative_acceptor RI_chr3L_19787260_19787323,Ir76a,RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19795029_19795077;chr3L_19795029_19795086 chr3L_19795029_19795090 chr3L_19795020_19795028;chr3L_19795091_19795214 97.06 NA NA NA NA NA NA 75.00 100.00 NA NA NA NA NA NA 85.71 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 94.12 NA NA NA NA NA NA NA NA NA K intron_retention Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16106466_16107411 chr3L_16106465_16106466;chr3L_16107411_16107412 chr3L_16106332_16106465;chr3L_16107412_16107820 20.83 32.00 15.56 27.78 26.32 20.69 24.14 15.00 24.14 18.52 16.67 12.07 19.05 13.33 25.00 16.00 NA 23.33 10.71 18.07 37.50 56.94 21.95 25.00 13.64 20.00 23.08 19.35 29.17 30.00 14.29 25.00 20.69 21.43 16.67 47.62 21.28 18.52 15.15 20.37 33.33 20.83 18.18 21.21 15.38 27.59 27.27 22.00 15.69 20.69 20.75 22.73 26.67 20.00 21.43 23.81 NA 8.00 K intron_retention Psa,I_chr3L_1518053_1518213 chr3L + chr3L_1502982_1518176 chr3L_1502981_1502982;chr3L_1518176_1518177 chr3L_1502976_1502981;chr3L_1518177_1518796 16.67 NA NA NA NA NA 15.62 15.79 20.00 NA NA 18.18 NA NA NA 16.67 NA NA 14.29 7.14 NA 9.09 NA NA NA NA NA NA NA NA 18.75 NA NA 30.77 NA NA NA NA NA NA NA 18.75 NA 13.33 NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA K cassette Sin3A,I_chr2R_8473578_8480185,RI_chr2R_8479951_8480233 chr2R - chr2R_8464499_8466633 chr2R_8464499_8464958;chr2R_8465215_8466633 chr2R_8464959_8465214 chr2R_8464073_8464498;chr2R_8466634_8466733 0.84 0.89 1.15 1.98 0.00 0.00 1.05 2.04 1.26 0.98 1.54 1.24 3.12 3.03 0.85 3.37 0.00 2.70 2.50 1.03 1.47 0.69 0.66 0.78 1.41 0.00 0.80 1.98 0.00 0.00 1.09 0.00 0.00 2.29 0.95 0.78 0.59 0.00 0.57 0.43 0.71 0.52 1.39 1.02 0.80 0.53 0.84 0.28 1.62 0.75 0.79 1.92 0.00 0.00 0.86 1.09 0.00 0.00 K cassette ssp4,I_chr2R_13409412_13411328,I_chr2R_13409412_13411588,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13410466_13411588;chr2R_13409406_13411588;chr2R_13408434_13411588;chr2R_13411077_13411588 chr2R_13408434_13411328,chr2R_13409406_13411328,chr2R_13410466_13411328,chr2R_13411077_13411328;chr2R_13411404_13411588 chr2R_13411329_13411403 chr2R_13408151_13408433;chr2R_13411589_13411688 48.15 47.37 62.50 69.57 33.33 41.38 15.58 63.46 43.90 18.18 31.25 44.62 48.48 50.00 51.11 66.67 67.65 42.86 52.78 63.77 46.67 13.56 51.72 49.23 36.67 39.58 54.05 25.71 30.56 47.37 56.25 33.33 61.90 52.08 52.78 54.05 46.55 52.78 40.62 24.05 29.03 50.00 42.86 44.90 39.02 48.15 53.12 56.52 51.79 44.90 52.83 56.25 55.56 40.54 47.06 41.46 71.88 58.33 K intron_retention CG7766,I_chrX_8993495_8994545,I_chrX_8991338_8991387 chrX - chrX_8989685_8990798 chrX_8989684_8989685;chrX_8990798_8990799 chrX_8989428_8989684;chrX_8990799_8990858 55.56 59.26 65.85 71.43 64.71 43.75 32.73 40.00 56.32 38.24 89.29 53.03 41.86 50.00 50.98 57.45 66.67 44.00 76.47 45.45 57.58 75.61 70.24 62.03 52.08 72.22 60.00 63.16 83.64 68.42 41.51 55.26 49.37 52.54 47.92 65.31 79.63 65.57 69.51 42.27 33.96 59.42 56.25 73.68 36.67 45.45 55.56 35.94 59.68 53.57 58.90 57.50 41.86 53.49 47.27 55.56 54.55 29.58 K intron_retention CG10103,noncoding_10997 chr3L - chr3L_6747908_6748172 chr3L_6747907_6747908;chr3L_6748172_6748173 chr3L_6747845_6747907;chr3L_6748173_6748223 85.96 100.00 86.67 76.92 71.43 78.57 100.00 82.61 82.50 92.31 55.00 83.87 100.00 78.57 77.78 94.12 88.89 91.67 66.67 88.24 76.47 100.00 85.19 80.95 86.67 92.31 94.12 93.75 93.33 93.33 93.75 81.82 86.21 84.00 NA 100.00 94.12 84.62 83.33 88.24 85.71 85.19 84.62 90.48 85.71 81.08 88.24 72.73 95.83 89.47 94.74 100.00 66.67 92.86 64.71 78.95 70.83 79.49 K jcn_only_AD miple2,I_chr3L_271508_273549,I_chr3L_271695_273549,I_chr3L_271922_273549,I_chr3L_274251_274594 chr3L + chr3L_271792_273549;chr3L_273391_273549;chr3L_271695_273549 chr3L_271217_273549 chr3L_273550_273649;chr3L_271209_271216 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 2.27 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1233 chr3L + chr3L_364904_364964 chr3L_364903_364904;chr3L_364964_364965 chr3L_362427_364903;chr3L_364965_365659 1.67 5.00 0.00 8.51 7.41 3.23 6.38 7.27 2.99 0.00 0.00 4.29 0.00 2.94 0.00 5.56 7.41 0.00 0.00 2.67 0.00 6.82 5.56 1.67 0.00 9.38 5.66 18.52 5.71 0.00 0.00 0.00 0.00 0.00 0.00 7.41 1.96 5.26 1.32 5.00 8.82 2.41 0.00 5.41 1.92 0.00 0.00 2.70 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 K jcn_only_AA tow chr3L + chr3L_6941016_6941085 chr3L_6941016_6941070 chr3L_6940922_6941015;chr3L_6941086_6941098 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N jcn_only_AD CG30492,C_chr2R_3522706_3523025,CG30494,RI_chr2R_3536203_3536977,I_chr2R_3543397_3543455 chr2R + chr2R_3528123_3535801 chr2R_3533932_3535801 chr2R_3535802_3535913;chr2R_3527622_3528122 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.26 0.00 12.86 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 16.95 0.00 NA 0.00 0.00 0.00 24.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.79 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Shawn_Tyler,CG14213 chrX + chrX_19533427_19533487 chrX_19533427_19533478 chrX_19533178_19533426;chrX_19533488_19533853 99.54 100.00 100.00 99.38 100.00 100.00 98.02 99.12 99.10 98.21 98.98 100.00 100.00 100.00 99.24 98.85 100.00 99.00 100.00 99.62 100.00 99.51 99.52 99.44 100.00 100.00 99.25 97.50 98.71 99.30 99.04 100.00 99.36 100.00 100.00 99.05 100.00 99.45 99.54 99.56 99.05 99.11 100.00 100.00 98.04 100.00 100.00 100.00 99.43 99.43 100.00 100.00 100.00 99.31 98.36 100.00 100.00 98.60 K jcn_only_AD eIF-5A,I_chr2R_19945430_19946454,I_chr2R_19945576_19946006,I_chr2R_19945723_19946006,I_chr2R_19945783_19946006,I_chr2R_19945852_19946006,I_chr2R_19945875_19946006,I_chr2R_19945921_19946006,I_chr2R_19946299_19946454,I_chr2R_19946657_19946733,I_chr2R_19948517_19948682 chr2R + chr2R_19945576_19946006;chr2R_19945921_19946006;chr2R_19945426_19946006;chr2R_19945430_19946006 chr2R_19945875_19946006 chr2R_19946007_19946106;chr2R_19945343_19945425 0.12 0.25 0.07 0.18 0.07 0.08 0.16 0.06 0.16 0.13 0.04 0.07 0.07 0.00 0.08 0.05 0.10 0.03 0.06 0.10 0.12 0.09 0.38 0.19 0.19 0.11 0.86 0.37 0.83 0.25 0.11 0.18 0.32 0.09 0.07 0.73 0.38 0.12 0.19 0.10 0.33 0.08 0.14 0.06 0.10 0.18 0.48 0.13 0.07 0.57 0.50 0.26 0.07 0.23 0.08 0.37 0.22 0.00 K intron_retention CG7609,I_chr3R_25574492_25574541 chr3R - chr3R_25569458_25569510 chr3R_25569457_25569458;chr3R_25569510_25569511 chr3R_25569446_25569457;chr3R_25569511_25569843 0.00 0.00 0.00 0.00 NA NA NA 6.67 5.71 NA NA 7.41 0.00 0.00 0.00 0.00 NA 6.67 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 9.52 NA NA 0.00 6.25 NA 0.00 3.85 0.00 23.08 NA 0.00 5.56 6.67 NA 0.00 6.67 0.00 NA 6.25 NA 0.00 6.67 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 N alternative_donor CG8801 chr2R - chr2R_5285964_5286088 chr2R_5285964_5286020 chr2R_5285916_5285963;chr2R_5286089_5286206 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.08 0.00 0.00 0.15 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.05 0.00 0.97 0.00 0.00 0.00 0.14 0.00 0.00 0.24 0.31 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.16 0.00 0.15 0.00 0.00 0.00 0.20 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.19 0.00 0.19 0.00 0.00 K jcn_only_AA CG31919,CG33995,F_chr2L_5045484_5046146 chr2L + chr2L_5043384_5045821;chr2L_5043384_5044582 chr2L_5043384_5044306 chr2L_5043377_5043383 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.69 1.12 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG31522,I_chr3R_270285_272146,I_chr3R_270285_272461,I_chr3R_272255_272359,RI_chr3R_273677_279264 chr3R - chr3R_270285_272461 chr3R_270285_272146;chr3R_272255_272461 chr3R_272147_272254 chr3R_270228_270284;chr3R_272462_272544 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention ade5,I_chrX_12653069_12653157 chrX - chrX_12652888_12652955 chrX_12652887_12652888;chrX_12652955_12652956 chrX_12651788_12652887;chrX_12652956_12653068 0.20 0.37 0.00 0.44 0.21 0.00 0.00 0.50 0.09 0.00 0.22 0.38 0.00 0.26 0.16 0.50 0.00 0.00 0.42 0.22 0.00 0.00 0.15 0.55 0.00 0.00 0.51 1.68 0.66 0.36 0.19 0.27 0.00 0.26 0.47 0.00 0.00 0.20 0.14 0.56 0.00 0.39 0.73 0.49 0.00 0.00 0.00 0.00 0.51 0.94 0.00 0.00 0.19 0.58 0.35 0.20 0.00 0.35 K multi_cassette CG9339,I_chr2L_20877678_20903015,I_chr2L_20882465_20889794,RE_chr2L_20903555_20916904,I_chr2L_20903560_20918638,I_chr2L_20922613_20922685 chr2L - chr2L_20877678_20903015 chr2L_20877678_20881986;chr2L_20882192_20882261;chr2L_20882465_20903015 chr2L_20881987_20882191;chr2L_20882262_20882464 chr2L_20877578_20877677;chr2L_20903016_20903115 100.00 98.00 97.78 92.75 100.00 97.78 100.00 100.00 100.00 100.00 100.00 98.73 96.43 97.78 98.31 98.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 97.50 100.00 100.00 97.92 100.00 100.00 100.00 100.00 98.46 100.00 97.78 100.00 97.96 100.00 98.67 100.00 98.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 96.15 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG8043,CG11755 chr3R + chr3R_4502770_4502834;chr3R_4502770_4502843;chr3R_4502770_4502810 chr3R_4502770_4502817 chr3R_4502645_4502769;chr3R_4502844_4503955 0.00 NA 0.00 7.69 NA 0.00 7.14 9.09 8.33 NA NA 6.25 NA 11.11 0.00 0.00 NA 0.00 12.50 13.33 14.29 0.00 10.00 0.00 11.11 0.00 0.00 14.29 NA NA 0.00 0.00 NA 10.00 NA 0.00 0.00 0.00 0.00 8.33 NA 0.00 NA 0.00 NA 0.00 0.00 NA 11.76 NA 9.09 NA NA 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG11560 chr3L + chr3L_12113689_12113754 chr3L_12113689_12113742 chr3L_12113202_12113688;chr3L_12113755_12114372 5.56 NA 0.00 5.56 NA NA NA 0.00 5.56 NA 7.69 6.25 NA NA 7.14 0.00 NA NA NA 3.45 NA 9.52 4.76 10.00 NA NA 7.69 NA NA NA NA 0.00 NA 5.56 NA 7.69 11.76 6.67 NA 10.53 5.88 0.00 NA NA NA 5.56 5.56 NA 5.26 5.56 6.25 NA 0.00 NA NA 6.67 4.76 10.34 K jcn_only_AD Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2364640;chr2L_2361586_2364480;chr2L_2361586_2364836;chr2L_2361586_2365060;chr2L_2361586_2364302;chr2L_2361586_2364312;chr2L_2361586_2364889 chr2L_2361586_2364594 chr2L_2361486_2361585;chr2L_2365061_2365065 12.22 9.33 10.82 9.29 10.00 11.92 17.78 8.99 13.38 9.18 10.29 10.30 13.68 9.14 9.91 10.31 12.37 16.95 11.61 19.16 13.47 9.77 10.67 8.33 10.45 13.30 13.39 14.61 14.57 12.22 15.46 7.10 10.47 9.78 12.98 22.79 8.29 6.00 14.52 7.76 13.86 11.53 15.75 13.25 11.57 15.97 14.88 13.91 11.08 14.07 19.85 6.43 18.81 24.51 14.61 14.57 13.53 7.21 K intron_retention Atx2 chr3R + chr3R_11240697_11240825 chr3R_11240696_11240697;chr3R_11240825_11240826 chr3R_11239291_11240696;chr3R_11240826_11242196 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.66 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.44 2.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention l(3)01239,I_chr3L_11067112_11067164 chr3L - chr3L_11067112_11067215 chr3L_11067111_11067112;chr3L_11067215_11067216 chr3L_11067012_11067111;chr3L_11067216_11067264 1.00 1.00 0.00 0.62 1.72 1.87 1.95 0.00 1.93 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 6.17 0.00 1.20 0.00 3.28 1.48 2.00 4.44 0.86 3.12 0.00 6.00 0.00 1.64 0.00 4.84 1.43 2.90 0.00 0.00 1.32 0.98 5.69 3.28 0.00 1.37 0.00 1.67 3.33 0.00 2.00 2.08 0.00 0.00 2.17 0.00 0.00 0.00 2.17 2.10 2.60 K intron_retention ced-6,I_chr2R_5324717_5324924,I_chr2R_5328640_5328696 chr2R - chr2R_5323030_5323090 chr2R_5323029_5323030;chr2R_5323090_5323091 chr2R_5322899_5323029;chr2R_5323091_5323159 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.29 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.86 2.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor l(2)k01209,I_chr2R_13308079_13310771,I_chr2R_13309452_13310771,RI_chr2R_13310877_13311160 chr2R + chr2R_13309417_13311160;chr2R_13308486_13311160;chr2R_13308079_13311160 chr2R_13309452_13311160 chr2R_13311161_13311260;chr2R_13307979_13308078 41.67 40.00 45.61 47.83 58.33 30.00 50.57 37.84 45.95 42.11 36.59 38.24 51.43 47.62 41.82 41.46 43.24 38.30 46.94 44.09 36.96 41.03 39.83 45.35 39.71 54.35 43.88 29.03 54.67 38.16 48.28 40.38 30.28 46.99 39.39 41.56 44.57 35.00 41.67 34.00 27.63 44.68 45.71 48.31 44.93 41.33 33.90 53.52 45.16 44.93 30.00 47.06 38.00 39.22 45.61 34.85 38.24 38.89 K jcn_only_AA mRpL28,CG3792,CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4975101_4975173 chr2L_4975101_4975152 chr2L_4975032_4975100;chr2L_4975174_4975238 100.00 100.00 99.14 100.00 100.00 100.00 100.00 99.36 100.00 100.00 98.11 100.00 100.00 100.00 100.00 98.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.55 100.00 100.00 96.58 99.50 100.00 100.00 99.55 100.00 99.44 100.00 99.10 98.00 100.00 98.95 100.00 100.00 99.45 100.00 100.00 99.59 99.71 100.00 100.00 100.00 100.00 99.43 100.00 100.00 99.38 100.00 99.35 100.00 100.00 K intron_retention CG32982,I_chr2L_9127467_9148754,EF_chr2L_9135385_9148841,F_chr2L_9149162_9154658 chr2L + chr2L_9127467_9154658 chr2L_9127466_9127467;chr2L_9154658_9154659 chr2L_9127456_9127466;chr2L_9154659_9154758 0.00 0.00 0.00 8.70 0.00 NA 4.76 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA NA NA 0.00 6.67 NA 2.44 2.17 0.00 0.00 NA 2.13 5.56 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 0.00 0.00 3.57 0.00 0.00 0.00 0.00 K intron_retention CG13124,RI_chr2L_9906444_9907607,RI_chr2L_9907784_9908405,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907545_9907607 chr2L_9907544_9907545;chr2L_9907607_9907608 chr2L_9907051_9907544;chr2L_9907608_9907707 4.00 0.00 4.92 4.81 0.00 0.00 2.82 2.13 4.42 0.00 4.44 7.29 6.98 7.55 4.08 4.00 4.17 4.00 0.00 5.30 3.70 8.54 2.50 0.00 3.92 4.92 5.19 0.00 30.95 0.00 4.48 5.00 0.00 3.37 3.12 4.62 5.77 0.00 1.41 5.61 3.28 3.06 3.77 0.00 0.00 4.62 0.00 7.14 6.02 11.76 6.10 2.70 6.67 0.00 7.46 0.00 4.17 1.59 K alternative_acceptor CG12582 chr3R + chr3R_23594_23930;chr3R_23594_23942 chr3R_23594_23980 chr3R_23459_23593;chr3R_23981_24494 96.74 97.80 96.68 96.02 96.15 98.29 89.94 98.08 97.42 95.92 97.85 97.09 97.69 98.15 97.87 96.83 97.21 97.16 98.43 97.43 96.74 95.68 97.10 96.00 93.68 96.39 96.70 96.90 89.92 95.45 90.99 96.08 95.07 97.43 96.49 97.18 95.18 96.75 96.38 95.85 95.83 97.89 97.66 95.92 95.00 96.07 97.02 93.52 97.58 95.76 97.38 95.65 97.44 95.98 97.76 96.26 96.80 97.60 K intron_retention CG1265,I_chr3L_4255296_4255550 chr3L + chr3L_4255296_4255609 chr3L_4255295_4255296;chr3L_4255609_4255610 chr3L_4255196_4255295;chr3L_4255610_4255650 3.77 0.00 1.69 4.44 0.00 4.35 5.56 2.60 2.97 6.06 0.00 2.35 12.12 0.00 8.89 5.71 4.65 3.92 2.22 3.01 0.00 3.45 6.06 0.00 0.00 5.00 4.55 0.00 7.14 5.26 7.84 6.06 11.54 2.70 8.33 0.00 3.90 3.45 2.60 2.90 6.06 1.98 5.26 2.82 14.29 1.32 1.69 5.71 4.88 3.39 6.35 3.92 0.00 3.77 3.33 2.60 5.81 8.33 K intron_retention PHGPx chr3L + chr3L_3327554_3327859 chr3L_3327553_3327554;chr3L_3327859_3327860 chr3L_3327488_3327553;chr3L_3327860_3328183 8.60 7.89 7.69 NA 0.00 6.67 19.35 12.50 16.36 6.67 16.67 9.52 NA NA 17.65 12.50 NA NA NA 17.31 16.67 15.12 8.22 5.36 10.81 NA 18.64 32.73 31.03 7.50 5.26 6.90 4.55 13.04 5.26 7.32 7.79 5.00 10.91 11.76 3.33 10.81 NA 2.35 13.64 9.52 3.23 13.64 16.67 3.92 17.07 5.26 5.88 6.06 NA 4.65 8.97 0.00 K alternative_donor MEP-1,CG42245,noncoding_10195,CG1143 chr3L + chr3L_2631917_2633537 chr3L_2632122_2633537 chr3L_2633538_2633809;chr3L_2631720_2631916 100.00 100.00 100.00 84.62 100.00 100.00 96.97 100.00 100.00 100.00 100.00 96.88 100.00 100.00 94.74 100.00 100.00 100.00 95.24 97.50 100.00 100.00 100.00 94.74 100.00 100.00 94.44 100.00 95.45 100.00 95.00 100.00 100.00 96.30 100.00 100.00 96.67 100.00 100.00 100.00 100.00 97.22 94.12 100.00 100.00 100.00 100.00 96.77 100.00 92.86 96.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 K cassette I_chr2L_6323791_6325172,Gef26,I_chr2L_6330719_6330770 chr2L + chr2L_6329698_6330770 chr2L_6329698_6330122;chr2L_6330697_6330770 chr2L_6330123_6330696 chr2L_6329548_6329697;chr2L_6330771_6330832 67.53 67.65 61.29 75.76 47.83 65.00 48.57 56.25 60.81 76.92 46.15 62.50 30.00 59.09 53.85 88.24 65.00 61.76 55.00 62.96 65.00 82.93 75.51 79.07 48.72 45.83 72.09 77.78 79.07 65.85 64.00 85.71 90.38 69.05 62.96 60.00 82.81 86.11 67.53 74.67 46.88 67.92 54.55 76.00 86.21 80.56 72.73 93.33 64.00 65.38 64.58 69.57 82.98 78.57 58.62 76.67 72.92 82.14 K intron_retention CG7357,CG18012 chr3R - chr3R_13633878_13633937 chr3R_13633877_13633878;chr3R_13633937_13633938 chr3R_13633758_13633877;chr3R_13633938_13634668 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 1.30 0.00 6.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6151,noncoding_12788,I_chr3L_15803949_15804163,RI_chr3L_15803949_15805547,I_chr3L_15804255_15804319,I_chr3L_15806727_15808816 chr3L - chr3L_15803949_15806345 chr3L_15803948_15803949;chr3L_15806345_15806346 chr3L_15803849_15803948;chr3L_15806346_15806453 0.00 0.00 0.00 0.91 0.00 0.00 0.00 1.83 0.59 0.00 5.77 1.50 1.47 0.00 0.00 2.60 0.00 0.00 0.00 0.00 2.90 1.61 0.74 0.00 1.18 0.00 2.26 1.27 0.00 2.15 1.19 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 2.70 2.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD F_chrX_15764251_15765393,CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15764432_15765393;chrX_15764247_15765393;chrX_15764620_15765393;chrX_15764599_15765393 chrX_15764522_15765393 chrX_15765394_15765493;chrX_15764236_15764246 53.03 NA NA 44.00 NA NA 50.00 53.33 50.00 NA NA NA NA NA NA 63.64 NA NA 65.00 65.22 NA NA NA NA NA NA NA NA NA NA NA NA NA 52.94 NA NA NA NA NA NA NA 53.12 NA NA NA NA NA NA 28.95 NA NA NA NA NA NA NA NA NA K intron_retention CG5745,I_chr3R_16928299_16928444 chr3R + chr3R_16928384_16928444 chr3R_16928383_16928384;chr3R_16928444_16928445 chr3R_16927936_16928383;chr3R_16928445_16928544 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 5.41 0.00 NA 0.00 2.08 0.00 0.00 10.26 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr2L_8182451_8183191,CG8460,CG8455 chr2L + chr2L_8197566_8197631 chr2L_8197565_8197566;chr2L_8197631_8197632 chr2L_8197226_8197565;chr2L_8197632_8197821 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3R_23749027_23749091,CG5508,noncoding_19648,E_chr3R_23755071_23758533 chr3R + chr3R_23751716_23754952 chr3R_23751715_23751716;chr3R_23754952_23754953 chr3R_23751412_23751715;chr3R_23754953_23755070 0.00 0.00 NA 12.50 0.00 5.00 9.09 0.00 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 0.00 0.00 2.56 NA 0.00 5.56 0.00 NA 0.00 NA NA NA NA 0.00 NA NA 4.65 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 NA 4.76 NA NA NA 0.00 NA 0.00 0.00 K intron_retention tou,I_chr2R_7468394_7468453,RI_chr2R_7474644_7475275,I_chr2R_7479681_7491857,I_chr2R_7504956_7505020 chr2R - chr2R_7469651_7470519 chr2R_7469650_7469651;chr2R_7470519_7470520 chr2R_7469595_7469650;chr2R_7470520_7474530 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.14 7.14 NA NA NA NA NA NA 14.29 NA NA 14.29 NA NA 0.00 NA NA NA 7.69 NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA K intron_retention bbc,REI_chr2R_9379401_9381986 chr2R - chr2R_9379401_9381755 chr2R_9379400_9379401;chr2R_9381755_9381756 chr2R_9379301_9379400;chr2R_9381756_9382370 0.41 0.00 0.00 0.85 0.90 0.46 0.32 0.92 0.67 0.43 1.62 0.41 1.05 0.57 0.72 0.47 0.00 1.63 0.00 0.88 1.26 0.66 0.00 0.00 0.58 0.00 0.50 0.65 1.77 0.67 0.00 0.00 1.79 0.71 0.00 0.74 0.46 0.00 0.29 0.00 0.00 0.71 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.51 0.60 0.00 0.00 0.00 0.00 K alternative_acceptor CG7203,cdc14,RI_chr2L_7806524_7806667 chr2L - chr2L_7803744_7804570;chr2L_7803577_7804570 chr2L_7803044_7804570 chr2L_7804571_7804915;chr2L_7802415_7803043 66.67 NA NA 33.33 NA NA NA NA 66.67 NA NA 20.00 NA NA 80.00 NA NA NA NA 40.00 NA 40.00 75.00 50.00 NA NA NA NA 66.67 NA NA NA 60.00 NA NA 57.14 84.62 77.78 66.67 NA NA 66.67 NA 66.67 85.71 33.33 NA 57.14 71.43 NA NA NA 81.82 NA NA 33.33 NA 33.33 K intron_retention kay,E_chr3R_25616137_25617114 chr3R + chr3R_25616577_25617114 chr3R_25616576_25616577;chr3R_25617114_25617115 chr3R_25614671_25616576;chr3R_25617115_25617214 23.81 20.51 22.45 23.81 21.21 19.44 25.81 31.48 26.03 26.09 24.32 20.20 24.07 26.47 21.05 23.26 25.64 82.14 33.33 24.76 30.00 30.95 19.35 25.00 16.67 14.58 23.26 24.68 19.67 20.00 25.00 35.71 20.00 22.22 30.00 12.16 20.83 20.00 20.31 25.49 29.41 25.35 14.29 28.57 21.88 25.00 15.56 26.47 30.16 16.28 28.57 17.86 6.67 16.67 25.00 19.35 16.28 26.32 K intron_retention Rox8,I_chr3R_19872211_19872659,I_chr3R_19872214_19872630,I_chr3R_19872214_19872636,I_chr3R_19872214_19872838,I_chr3R_19876189_19876240 chr3R - chr3R_19872214_19873682 chr3R_19872213_19872214;chr3R_19873682_19873683 chr3R_19872114_19872213;chr3R_19873683_19873709 30.38 NA 25.00 18.18 NA NA 60.00 23.08 25.93 NA 41.67 17.65 21.43 NA 31.25 31.25 26.67 33.33 35.00 27.59 30.77 NA NA NA NA NA NA NA NA NA 25.00 NA 70.00 28.57 NA NA NA NA NA NA NA 30.00 30.77 NA NA NA NA 41.67 27.03 NA NA NA NA NA 31.58 NA NA 53.33 K jcn_only_AA CG11337,I_chr3R_27230306_27230374,RI_chr3R_27230320_27230374 chr3R - chr3R_27230320_27230374;chr3R_27230306_27230374 chr3R_27230327_27230374 chr3R_27230375_27230410;chr3R_27230220_27230305 12.00 NA NA 20.83 NA NA NA 12.00 13.79 NA NA 3.85 NA NA NA 12.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA 10.00 NA NA NA NA NA 15.00 NA NA NA K intron_retention DppIII,CG7352 chr3R + chr3R_4170206_4170814 chr3R_4170205_4170206;chr3R_4170814_4170815 chr3R_4170198_4170205;chr3R_4170815_4171121 2.78 5.26 2.38 2.70 0.00 0.00 1.96 1.54 3.85 8.70 0.00 2.78 4.35 0.00 4.17 1.75 0.00 0.00 2.04 2.86 5.56 6.67 4.17 7.69 0.00 0.00 19.23 14.63 7.69 8.70 4.44 13.33 7.41 0.00 0.00 3.70 7.69 3.45 8.70 5.26 0.00 0.00 4.55 0.00 0.00 3.85 0.00 10.53 1.02 3.85 9.68 0.00 0.00 0.00 0.00 0.00 0.00 11.54 K jcn_only_AA RpL36A,I_chr2L_8042126_8042468,snoRNA:Psi28S-2648 chr2L - chr2L_8042120_8042439 chr2L_8042126_8042439 chr2L_8042440_8042613;chr2L_8042026_8042119 100.00 100.00 100.00 100.00 99.98 100.00 100.00 99.99 100.00 100.00 100.00 100.00 100.00 100.00 99.99 100.00 100.00 100.00 100.00 99.99 99.98 100.00 100.00 100.00 100.00 99.99 100.00 99.99 100.00 100.00 100.00 100.00 99.99 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.99 99.98 100.00 99.98 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Mad chr2L - chr2L_3149280_3159493 chr2L_3149279_3149280;chr2L_3159493_3159494 chr2L_3148804_3149279;chr2L_3159494_3159621 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 K alternative_acceptor Spargel,RI_chr3R_252723_254271,noncoding_14534 chr3R - chr3R_252348_252444 chr3R_252375_252444 chr3R_252445_252550;chr3R_252282_252347 81.82 81.25 79.55 75.71 76.92 81.82 81.25 82.09 82.29 90.00 87.50 83.93 76.47 68.97 80.49 81.97 74.29 80.56 84.09 77.78 87.50 85.71 80.33 82.50 91.30 90.00 73.91 79.31 78.12 74.47 88.57 73.08 80.20 81.54 75.00 88.24 80.00 80.56 79.55 88.52 78.57 84.00 82.35 82.35 73.68 80.00 88.24 71.25 82.14 90.48 83.64 86.21 82.61 82.35 84.78 85.71 94.44 72.00 K intron_retention I_chrX_2074366_2074423,Nmd3 chrX - chrX_2077583_2077642 chrX_2077582_2077583;chrX_2077642_2077643 chrX_2076768_2077582;chrX_2077643_2078676 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor spri,I_chrX_10404621_10469422,I_chrX_10413811_10440661,I_chrX_10417598_10440661 chrX - chrX_10438538_10440661 chrX_10438626_10440661 chrX_10440662_10440749;chrX_10438419_10438537 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 85.71 100.00 100.00 92.31 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 NA 90.00 NA 90.00 92.31 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 K intron_retention CG2924,I_chrX_2168373_2168893 chrX - chrX_2160218_2160280 chrX_2160217_2160218;chrX_2160280_2160281 chrX_2160069_2160217;chrX_2160281_2160572 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Synd chr3R + chr3R_16658596_16660946 chr3R_16658617_16660946 chr3R_16660947_16661053;chr3R_16658589_16658595 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 1.72 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG42390 chr3R + chr3R_17957065_17957822 chr3R_17957065_17957292 chr3R_17956965_17957064;chr3R_17957823_17957966 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 8.33 NA NA 4.76 4.76 0.00 NA NA NA 0.00 NA NA 4.00 0.00 NA 4.35 0.00 0.00 NA NA NA 0.00 0.00 NA 1.79 NA 2.44 0.00 NA NA 0.00 NA 4.55 0.00 0.00 K jcn_only_AA simj,I_chr3L_10680263_10680313 chr3L + chr3L_10680263_10680337 chr3L_10680263_10680313 chr3L_10680176_10680262;chr3L_10680338_10680413 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 0.41 0.00 0.00 1.09 0.00 0.00 0.00 0.56 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.84 0.00 0.00 1.20 0.00 0.00 1.02 0.00 K cassette CG34394,I_chr2L_3365674_3365965 chr2L - chr2L_3367720_3372778 chr2L_3367720_3367850;chr2L_3368195_3372778 chr2L_3367851_3368194 chr2L_3367245_3367719;chr2L_3372779_3372820 94.12 90.00 96.30 83.72 95.00 95.65 89.19 82.93 98.28 100.00 94.74 97.78 95.24 95.65 95.83 96.97 95.00 95.45 92.00 82.09 96.00 92.86 97.14 89.66 94.44 94.74 84.62 89.29 82.14 93.10 86.67 93.75 94.29 93.18 95.45 81.25 81.40 94.44 100.00 98.08 90.91 92.45 82.35 100.00 82.35 95.65 95.65 97.37 88.89 93.33 90.91 100.00 94.12 92.86 93.55 93.33 93.33 100.00 K jcn_only_AD CG41099,I_chr3RHet_1688505_1705884,RI_chr3RHet_1703294_1705884 chr3RHet - chr3RHet_1703298_1705901 chr3RHet_1703298_1705884 chr3RHet_1702561_1703297;chr3RHet_1705902_1705984 81.36 NA NA 92.59 NA NA 83.87 74.36 NA NA NA 85.71 NA 95.00 NA 85.96 NA NA NA 85.19 NA NA NA NA NA NA NA NA NA NA 76.19 NA NA 79.41 NA 80.00 NA NA NA NA NA 73.33 NA 89.29 NA NA NA 76.19 81.36 NA NA NA NA NA NA NA NA 73.08 K cassette CtBP chr3R + chr3R_8837471_8845063 chr3R_8837471_8840829;chr3R_8840915_8845063 chr3R_8840830_8840914 chr3R_8837339_8837470;chr3R_8845064_8845536 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention dor,hfw chrX + chrX_1559445_1559506 chrX_1559444_1559445;chrX_1559506_1559507 chrX_1559108_1559444;chrX_1559507_1560165 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 5.56 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 9.09 6.25 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette DCAP,E_chr2R_6159586_6174578,I_chr2R_6162362_6166803,I_chr2R_6163353_6166716,I_chr2R_6163353_6166727,I_chr2R_6164310_6172914,I_chr2R_6172307_6179999,I_chr2R_6178643_6181126,RI_chr2R_6183553_6192101,I_chr2R_6188094_6192101 chr2R + chr2R_6159586_6182116 chr2R_6159586_6181126;chr2R_6181267_6181365;chr2R_6181439_6182116 chr2R_6181127_6181266;chr2R_6181366_6181438 chr2R_6159486_6159585;chr2R_6182117_6182270 88.89 NA 100.00 NA NA NA NA 75.00 100.00 NA NA 100.00 NA NA 60.00 100.00 100.00 80.00 85.71 100.00 NA NA NA 75.00 NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA 75.00 87.50 NA 88.89 NA 100.00 NA 100.00 NA NA 85.71 NA 100.00 75.00 100.00 NA NA NA NA NA K intron_retention CG34228 chr2R + chr2R_7539577_7539644 chr2R_7539576_7539577;chr2R_7539644_7539645 chr2R_7539237_7539576;chr2R_7539645_7539786 0.00 0.00 0.00 12.73 0.00 0.00 3.57 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 6.52 0.00 0.00 0.00 13.04 17.50 14.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.23 0.00 0.00 0.00 2.17 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Dgp-1,I_chr2R_14058825_14059758,I_chr2R_14058951_14059942,I_chr2R_14058954_14059942 chr2R - chr2R_14058825_14059942;chr2R_14058951_14059942 chr2R_14058954_14059942 chr2R_14059943_14060042 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.55 1.52 0.00 0.00 2.70 0.00 0.00 3.12 0.00 1.19 3.70 4.55 3.33 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 1.16 0.00 3.57 0.00 NA 0.00 0.00 0.00 0.00 1.96 0.00 K alternative_acceptor cenB1A chr3R + chr3R_18947355_18947549 chr3R_18947355_18947528 chr3R_18947059_18947354;chr3R_18947550_18947666 64.29 62.96 63.83 44.94 64.58 73.53 73.02 55.56 68.94 69.57 75.00 64.13 79.41 61.11 66.67 64.29 57.69 65.00 62.22 57.14 58.54 81.25 63.95 60.61 69.05 68.89 52.31 48.72 58.54 54.17 62.26 70.00 70.73 51.28 57.58 94.44 72.97 63.16 72.46 69.64 60.00 63.06 49.02 66.10 69.70 70.00 66.67 63.64 64.29 65.15 65.28 68.42 62.50 70.59 61.90 64.29 52.73 63.33 K cassette tomosyn,I_chrX_12531219_12531470,I_chrX_12534873_12541731,noncoding_23357,I_chrX_12548772_12549203 chrX + chrX_12534873_12545142 chrX_12534873_12542569;chrX_12543084_12545142 chrX_12542570_12543083 chrX_12534773_12534872;chrX_12545143_12545259 90.00 90.00 90.91 100.00 83.33 85.71 69.23 54.55 80.95 100.00 87.50 100.00 83.33 83.33 83.33 90.00 NA 85.71 69.23 91.67 100.00 78.57 93.33 81.25 100.00 71.43 90.00 NA 90.91 90.00 63.64 85.71 93.33 93.33 87.50 90.00 93.55 92.31 95.00 93.75 83.33 94.74 75.00 81.25 88.89 90.91 100.00 93.33 76.47 75.00 93.33 80.00 91.67 83.33 88.89 88.89 92.31 100.00 K intron_retention growl chr3R + chr3R_229514_230190 chr3R_229513_229514;chr3R_230190_230191 chr3R_229445_229513;chr3R_230191_230361 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 100.00 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA 100.00 100.00 NA 88.89 NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA N alternative_acceptor CG5706,I_chr3R_20078025_20078083 chr3R - chr3R_20078010_20078087 chr3R_20078025_20078087 chr3R_20078088_20078118;chr3R_20077925_20078009 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 81.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor Nplp2,I_chr3L_13349726_13349896 chr3L + chr3L_13349947_13350107 chr3L_13349953_13350107 chr3L_13350108_13350349;chr3L_13349897_13349946 99.80 99.77 99.82 99.74 99.84 99.83 99.76 99.78 99.80 99.79 99.89 99.75 99.86 99.75 99.63 99.83 99.78 99.85 99.83 99.81 99.88 99.92 99.87 99.70 99.81 99.79 99.51 99.47 99.81 99.78 99.82 99.78 99.82 99.84 99.88 99.79 99.74 99.89 99.78 99.91 99.71 99.84 99.77 99.88 99.86 99.82 99.83 99.93 99.78 99.76 99.81 99.72 99.71 99.80 99.74 99.79 99.75 99.83 K jcn_only_AD zip,I_chr2R_20878796_20879147 chr2R - chr2R_20898140_20898992;chr2R_20898140_20898834 chr2R_20898140_20898898 chr2R_20897903_20898139;chr2R_20898993_20898996 73.17 67.16 80.17 80.87 76.75 73.17 79.58 80.63 82.58 69.89 84.23 79.50 76.65 79.47 76.30 76.69 83.69 85.89 84.56 76.18 83.27 51.31 32.07 30.00 37.14 74.56 20.69 58.67 59.75 65.92 81.34 75.93 78.93 77.92 56.02 48.24 55.03 35.05 53.60 61.31 71.19 79.94 81.42 58.85 81.40 70.94 40.20 70.81 77.94 43.75 29.44 44.25 49.44 17.19 79.08 46.07 58.82 80.78 K jcn_only_AD CaMKI,I_chr4_473338_473410,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_473338_473428 chr4_473371_473428 chr4_473429_473444;chr4_473272_473337 100.00 100.00 100.00 98.46 100.00 100.00 98.39 98.67 99.04 100.00 96.30 98.57 100.00 100.00 97.73 100.00 97.62 100.00 100.00 100.00 100.00 96.55 97.37 100.00 95.65 96.97 100.00 NA 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 K intron_retention CG11897 chr3R + chr3R_24984070_24984223 chr3R_24984069_24984070;chr3R_24984223_24984224 chr3R_24983872_24984069;chr3R_24984224_24984412 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA NA K alternative_donor RpS15Aa chrX - chrX_13231573_13231643;chrX_13231573_13231639 chrX_13231573_13231635 chrX_13231538_13231572;chrX_13231644_13231706 5.83 NA 0.00 6.67 NA 0.00 12.50 4.00 0.00 NA 6.67 0.00 NA 0.00 0.00 12.50 NA 0.00 14.29 6.67 NA NA NA NA NA 10.00 NA NA 45.45 NA 9.09 NA NA 4.00 NA NA NA NA NA NA 12.50 5.41 7.14 NA NA NA NA NA 6.25 NA NA 0.00 NA NA 5.26 NA 0.00 9.52 K cassette Nipped-B,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_599551_607274 chr2R_599551_599605;chr2R_600281_607274 chr2R_599606_600280 chr2R_599451_599550;chr2R_607275_607374 97.97 97.87 98.48 96.43 97.37 91.84 96.71 96.71 96.05 100.00 100.00 96.24 98.72 98.68 98.48 100.00 95.65 98.00 97.94 100.00 100.00 97.50 97.59 98.08 98.04 95.52 98.77 94.34 96.97 97.30 98.33 100.00 97.30 97.97 100.00 98.15 97.37 100.00 100.00 100.00 94.12 96.90 98.51 98.65 100.00 96.43 95.45 97.92 100.00 100.00 100.00 94.55 100.00 92.31 98.70 95.65 95.83 95.65 K intron_retention Mgat2,I_chr3R_25845406_25845472,I_chr3R_25845406_25846373 chr3R - chr3R_25845406_25847371 chr3R_25845405_25845406;chr3R_25847371_25847372 chr3R_25845317_25845405;chr3R_25847372_25847519 0.00 0.00 0.00 5.56 NA NA NA 14.29 0.00 NA NA 15.00 NA NA NA 0.00 NA NA NA 0.00 NA NA 3.85 9.09 NA NA 6.67 NA NA NA NA NA NA 0.00 0.00 0.00 5.26 0.00 0.00 6.67 NA 0.00 NA 0.00 NA 0.00 0.00 7.69 5.56 NA 8.70 NA 0.00 NA NA 0.00 NA NA K jcn_only_AD kst,I_chr3L_3365752_3365816,I_chr3L_3367008_3367514 chr3L + chr3L_3367216_3367514;chr3L_3366963_3367514;chr3L_3367011_3367514;chr3L_3367008_3367514 chr3L_3366774_3367514 chr3L_3367515_3367614 58.16 50.78 59.88 61.86 69.49 76.22 43.80 41.49 55.66 58.16 68.81 53.42 51.90 47.49 63.27 47.14 61.85 38.50 59.63 65.52 63.47 44.07 59.43 52.00 45.91 32.85 51.16 44.79 51.23 54.85 61.35 58.30 49.22 59.40 61.59 51.87 48.66 52.25 58.68 94.39 60.94 56.21 58.94 44.75 46.87 65.35 64.47 64.69 59.83 63.57 58.19 53.59 58.56 56.00 55.22 58.39 52.70 60.07 K alternative_acceptor CG40351 chr3LHet + chr3LHet_594695_594779;chr3LHet_594695_594756 chr3LHet_594695_594765 chr3LHet_594687_594694;chr3LHet_594780_595060 36.66 NA NA 9.09 NA NA NA 40.00 33.33 NA NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA 40.00 NA NA NA K jcn_only_AA mew,I_chrX_13133259_13150649 chrX - chrX_13114180_13119016 chrX_13117886_13119016 chrX_13119017_13119144 16.67 17.19 11.82 16.88 10.81 6.25 12.00 21.21 15.03 8.51 9.72 13.79 9.26 17.86 7.96 11.70 17.24 10.13 17.11 12.57 11.48 10.53 29.47 21.84 8.89 17.24 16.67 NA 7.69 17.86 22.78 17.39 6.12 12.33 17.14 23.26 20.00 27.50 17.82 11.96 16.67 18.57 13.33 16.98 0.00 26.09 13.64 6.12 14.94 20.00 17.44 24.07 30.95 19.51 13.76 17.07 41.67 15.69 K intron_retention Atet,chr2L_4334987_4335394.0,chr2L_4335788_4336447.0 chr2L + chr2L_4334105_4336449 chr2L_4334104_4334105;chr2L_4336449_4336450 chr2L_4333926_4334104;chr2L_4336450_4336957 81.53 70.59 80.95 87.50 NA 85.00 91.30 84.44 84.09 91.67 90.00 83.33 83.33 85.19 78.12 80.56 81.25 75.00 86.21 93.75 92.86 43.18 65.00 75.00 65.00 85.19 80.56 66.67 87.72 81.82 79.17 84.62 75.00 77.50 72.00 71.88 75.00 63.64 85.19 92.16 75.00 80.95 87.50 76.92 89.29 85.11 88.89 83.95 83.33 57.89 80.00 69.23 81.25 54.55 88.24 92.86 80.00 86.96 K intron_retention CG8475,I_chr2L_8193230_8193671 chr2L - chr2L_8193230_8195020 chr2L_8193229_8193230;chr2L_8195020_8195021 chr2L_8193223_8193229;chr2L_8195021_8195054 0.00 4.55 0.00 2.63 0.00 0.00 3.23 0.00 6.25 NA 0.00 3.57 12.50 0.00 0.00 5.71 5.00 15.38 0.00 2.94 NA 2.00 4.49 0.00 3.85 5.88 0.00 3.12 0.00 0.00 5.00 0.00 0.00 6.67 3.45 0.00 3.03 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 2.94 1.82 5.71 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention LanB1,RI_chr2L_7820401_7820448,RI_chr2L_7820405_7820461 chr2L + chr2L_7820405_7820461 chr2L_7820404_7820405;chr2L_7820461_7820462 chr2L_7820305_7820404;chr2L_7820462_7820548 17.39 NA 12.50 20.00 NA NA 25.00 28.00 21.74 NA NA 20.00 12.50 23.08 9.09 25.00 NA NA 14.29 18.75 NA NA 17.39 0.00 NA 65.52 23.81 NA 57.89 NA NA NA 21.43 12.50 NA NA NA NA NA 20.00 43.75 16.67 NA NA 15.38 NA 17.39 NA 26.67 15.00 14.29 NA 5.56 NA 14.29 NA 7.41 17.39 K jcn_only_AD CG2219,I_chr4_199813_199889,RI_chr4_202143_202194 chr4 - chr4_199838_199889 chr4_199838_199886 chr4_199758_199837;chr4_199890_199942 6.90 4.00 5.26 7.92 5.00 10.71 7.41 7.14 5.26 11.11 9.09 2.13 4.29 1.61 14.00 7.87 9.86 2.86 9.52 7.41 13.89 10.00 8.41 6.74 5.77 0.00 6.82 10.17 6.98 8.82 6.45 14.52 0.00 11.46 2.00 4.08 13.56 9.43 5.45 9.20 13.04 2.25 7.69 9.30 6.90 12.79 4.48 6.56 3.23 6.73 2.70 10.00 6.38 0.00 7.04 6.35 4.12 6.33 K cassette Sap47,I_chr3R_11782899_11785041,I_chr3R_11783642_11784655 chr3R + chr3R_11782030_11785041 chr3R_11782030_11783312;chr3R_11783642_11785041 chr3R_11783313_11783641 chr3R_11781712_11782029;chr3R_11785042_11785141 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL32,I_chr3R_25871509_25871807 chr3R - chr3R_25871509_25871611 chr3R_25871508_25871509;chr3R_25871611_25871612 chr3R_25871409_25871508;chr3R_25871612_25871727 100.00 NA NA 90.00 100.00 NA 100.00 100.00 90.00 90.91 NA NA NA NA NA 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 96.30 NA 100.00 90.00 90.91 NA NA NA 100.00 100.00 100.00 95.24 92.86 90.00 NA 100.00 91.67 88.89 75.00 100.00 91.67 88.89 100.00 NA 88.89 NA 100.00 100.00 100.00 100.00 K alternative_donor Moe,I_chrX_8774434_8775874,I_chrX_8774434_8791759 chrX - chrX_8774434_8791943 chrX_8774434_8791871 chrX_8774334_8774433;chrX_8791944_8791970 100.00 95.00 100.00 100.00 100.00 100.00 96.88 97.44 97.87 NA 100.00 96.88 100.00 95.83 100.00 97.30 100.00 100.00 100.00 96.55 91.67 85.71 94.12 100.00 83.33 100.00 91.67 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 85.71 100.00 100.00 100.00 100.00 NA K alternative_donor msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585733_2586402;chr3L_2585733_2586413 chr3L_2585733_2586036 chr3L_2585639_2585732;chr3L_2586414_2586502 56.00 46.67 52.38 68.18 50.00 45.00 71.79 56.00 64.71 NA 57.89 56.67 71.43 64.71 54.55 63.89 61.54 55.56 65.00 47.37 50.00 56.76 60.00 62.50 NA 65.00 61.11 54.55 71.05 59.09 45.83 50.00 59.26 54.84 61.90 47.83 52.38 55.56 52.94 48.78 63.64 54.55 52.94 51.52 55.56 60.00 50.00 60.98 50.00 57.14 53.33 64.29 41.67 40.00 58.82 53.85 66.67 69.23 K alternative_acceptor CG7609,I_chr3R_25574492_25574541 chr3R - chr3R_25569455_25569510 chr3R_25569458_25569510 chr3R_25569511_25569843;chr3R_25569446_25569454 81.82 81.82 63.64 92.86 NA 87.50 64.29 77.78 94.44 NA NA 80.00 88.89 87.50 83.33 73.68 54.55 87.50 71.43 91.30 88.89 86.67 73.33 78.57 88.89 91.67 83.33 NA 55.56 81.82 75.00 87.50 70.00 93.33 88.89 69.23 NA 72.73 90.91 80.00 87.50 73.91 66.67 87.50 NA 90.00 85.71 76.92 85.00 90.91 91.67 75.00 75.00 85.71 65.00 70.00 69.23 75.00 K cassette shot,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9753001_9753953 chr2R_9753001_9753565;chr2R_9753632_9753953 chr2R_9753566_9753631 chr2R_9752056_9753000;chr2R_9753954_9754137 99.52 99.19 100.00 98.40 100.00 100.00 97.55 100.00 99.39 82.05 97.94 100.00 100.00 100.00 99.03 100.00 97.25 100.00 98.88 98.19 98.72 100.00 98.64 98.86 99.16 98.85 100.00 100.00 99.30 100.00 99.07 100.00 99.25 100.00 100.00 98.88 99.62 99.06 99.41 99.38 100.00 98.72 100.00 100.00 99.34 100.00 99.38 100.00 99.52 99.17 100.00 100.00 100.00 100.00 100.00 99.29 99.36 100.00 K alternative_donor l(3)82Fd,I_chr3R_1125296_1161435,I_chr3R_1125296_1175189,I_chr3R_1129905_1160126,I_chr3R_1140028_1160126,I_chr3R_1147660_1148709 chr3R - chr3R_1148848_1149160;chr3R_1148848_1149386;chr3R_1148848_1149413 chr3R_1148848_1149460 chr3R_1148710_1148847;chr3R_1149461_1149489 20.00 NA NA 0.00 NA NA 20.00 0.00 25.00 NA NA 0.00 NA NA NA 14.29 NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG32685,CREI_chrX_9967445_9972518 chrX - chrX_9969104_9969176 chrX_9969103_9969104;chrX_9969176_9969177 chrX_9969016_9969103;chrX_9969177_9969660 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 NA 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CPTI,I_chr2R_6358255_6358734,I_chr2R_6358255_6359122,RI_chr2R_6358779_6358944,I_chr2R_6360956_6365128 chr2R - chr2R_6358255_6359122;chr2R_6358255_6358944 chr2R_6358255_6358718;chr2R_6358779_6359122,chr2R_6358779_6358944 chr2R_6358719_6358778 chr2R_6358234_6358254;chr2R_6359123_6359222 98.44 97.14 100.00 100.00 100.00 100.00 96.77 100.00 100.00 96.30 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 98.44 100.00 80.33 100.00 100.00 95.65 97.06 97.44 100.00 97.62 97.62 100.00 100.00 96.23 97.50 100.00 86.67 100.00 100.00 97.62 97.92 97.44 100.00 100.00 98.00 100.00 97.67 97.50 98.04 100.00 97.37 97.62 96.30 97.44 96.00 97.06 100.00 98.44 97.14 N alternative_acceptor CG13895,RI_chr3L_707623_707678,RI_chr3L_711692_711744 chr3L - chr3L_707623_707889 chr3L_707810_707889 chr3L_707890_707997;chr3L_707523_707622 0.00 0.00 0.00 0.00 0.00 1.32 1.59 0.93 0.56 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 1.86 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.73 0.42 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.61 0.66 0.00 0.00 0.00 0.75 0.00 0.38 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.26 K alternative_donor BtbVII,I_chr3L_3150858_3150927,I_chr3L_3151185_3151263 chr3L + chr3L_3150843_3150927 chr3L_3150858_3150927 chr3L_3150928_3151027;chr3L_3150758_3150842 3.05 3.64 5.00 2.60 1.41 4.76 5.88 1.67 3.05 1.37 4.11 2.16 2.38 5.45 14.29 5.13 3.33 4.00 1.89 3.55 3.33 3.00 2.70 2.38 3.90 1.75 6.67 4.65 2.11 4.48 3.39 3.39 2.04 2.27 2.82 1.19 2.06 2.34 5.06 1.74 2.13 3.70 0.00 3.09 3.61 4.92 1.05 2.94 3.47 2.44 3.57 4.23 2.44 0.00 3.85 4.88 2.50 1.61 K cassette CG11299,noncoding_8970,I_chr2R_19602423_19609308,I_chr2R_19619053_19619186 chr2R + chr2R_19601642_19609732;chr2R_19601642_19616571 chr2R_19601642_19602188;chr2R_19602423_19609732,chr2R_19602423_19616571 chr2R_19602189_19602422 chr2R_19601628_19601641;chr2R_19616572_19616757 98.33 96.55 100.00 97.78 92.59 100.00 100.00 96.61 97.47 100.00 100.00 97.92 97.50 100.00 100.00 98.15 100.00 96.30 97.37 98.53 100.00 100.00 90.91 95.24 91.67 100.00 95.83 100.00 85.71 93.33 96.55 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 92.31 98.11 96.15 100.00 100.00 94.74 100.00 100.00 98.33 93.75 96.88 94.44 100.00 93.75 97.30 95.65 100.00 100.00 K intron_retention noncoding_23420,hep chrX - chrX_12977132_12978277 chrX_12977131_12977132;chrX_12978277_12978278 chrX_12976641_12977131;chrX_12978278_12978344 5.88 0.00 0.00 0.00 11.76 0.00 10.87 3.12 7.25 6.25 11.11 10.00 15.00 7.41 9.52 9.68 4.55 11.11 0.00 1.82 11.11 0.00 6.67 4.26 8.00 14.29 8.82 NA 0.00 0.00 5.71 NA 0.00 7.32 0.00 9.68 0.00 14.29 0.00 8.70 NA 12.20 6.45 7.41 NA 5.56 0.00 0.00 6.67 5.26 5.00 5.88 0.00 0.00 9.52 0.00 6.25 5.71 K intron_retention ire-1,FI_chr3R_15689914_15690042 chr3R - chr3R_15683407_15686368 chr3R_15683406_15683407;chr3R_15686368_15686369 chr3R_15682963_15683406;chr3R_15686369_15686483 22.92 22.67 26.51 22.41 22.95 25.56 17.02 26.28 19.87 11.70 23.08 25.73 14.06 19.74 25.77 18.58 17.86 32.39 18.52 21.29 27.69 19.51 19.38 25.00 25.58 20.88 23.85 29.79 33.11 15.15 22.66 32.31 17.89 22.22 17.24 24.72 17.89 27.78 23.53 24.40 18.90 22.92 24.07 17.09 31.00 28.44 33.87 21.52 22.44 28.33 22.33 21.43 22.45 41.46 20.93 27.42 24.32 27.27 K intron_retention RpS11,snoRNA:Me28S-C3420a,I_chr2R_8087545_8087698,I_chr2R_8087747_8088193 chr2R - chr2R_8087095_8087338 chr2R_8087094_8087095;chr2R_8087338_8087339 chr2R_8086818_8087094;chr2R_8087339_8087544 0.01 0.04 0.01 0.01 0.00 0.01 0.00 0.03 0.02 0.00 0.03 0.01 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.02 0.00 0.04 0.00 0.02 0.00 0.00 0.06 0.05 0.02 0.00 0.00 0.02 0.03 0.01 0.01 0.02 0.01 0.03 0.01 0.01 0.02 0.01 0.00 0.00 0.00 0.02 0.00 0.00 0.03 0.00 0.04 0.00 0.01 0.00 0.01 0.02 0.01 0.00 N jcn_only_AD CG42533,F_chr2L_7474506_7474872,F_chr2L_7476906_7476978 chr2L - chr2L_7474506_7476978 chr2L_7474506_7474622 chr2L_7474406_7474505;chr2L_7476979_7477078 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.27 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 K jcn_only_AA Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11835109_11835509 chr2R_11835112_11835509 chr2R_11835510_11836215;chr2R_11834432_11835108 99.29 98.71 97.98 100.00 100.00 97.26 98.88 100.00 99.14 100.00 100.00 99.43 100.00 98.59 97.20 98.80 100.00 97.56 98.88 99.45 98.68 100.00 100.00 99.45 100.00 100.00 100.00 100.00 100.00 99.29 98.78 99.19 98.18 98.13 96.69 98.41 98.78 100.00 98.53 99.12 100.00 99.04 98.46 99.53 98.36 99.35 100.00 98.31 99.38 99.42 100.00 98.20 100.00 99.28 100.00 98.46 99.19 100.00 K intron_retention CG1416 chr2L + chr2L_21758360_21758441 chr2L_21758359_21758360;chr2L_21758441_21758442 chr2L_21758210_21758359;chr2L_21758442_21758600 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.26 0.00 0.75 0.00 0.00 0.00 1.16 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.34 0.00 0.00 0.58 0.67 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 1.09 0.00 0.00 0.37 0.64 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon 5PtaseI,RI_chr3R_20866598_20868366,I_chr3R_20870012_20870243 chr3R - chr3R_20866598_20868947 chr3R_20868404_20868947 chr3R_20866121_20866597 chr3R_20866784_20868403 chr3R_20868948_20869187 75.00 85.71 75.00 82.14 90.91 73.33 72.00 80.77 78.12 40.00 69.23 81.48 73.33 75.00 81.25 81.82 91.67 75.00 75.00 75.68 69.23 76.19 66.67 72.73 76.92 64.29 72.22 75.00 80.00 80.00 57.89 71.43 78.95 80.00 73.33 85.71 77.27 81.25 71.43 62.96 75.00 73.33 83.33 75.00 58.82 68.42 68.75 68.75 77.42 76.47 69.57 84.62 69.23 68.75 75.00 66.67 65.00 72.22 K alternative_acceptor CG34408,I_chrX_10120689_10121004 chrX + chrX_10120689_10121444;chrX_10120689_10121381 chrX_10120689_10121435 chrX_10120589_10120688;chrX_10121445_10121990 94.59 88.89 100.00 91.67 100.00 100.00 100.00 100.00 95.65 80.00 100.00 95.24 100.00 100.00 91.67 100.00 75.00 100.00 NA 86.96 92.86 85.37 90.48 85.00 100.00 100.00 85.71 75.00 83.33 94.74 100.00 100.00 86.36 94.44 91.67 100.00 88.89 92.31 90.00 86.67 100.00 96.00 100.00 86.36 92.31 94.74 100.00 88.89 100.00 100.00 90.48 90.00 100.00 91.67 93.75 85.71 100.00 100.00 K intron_retention Dif,I_chr2L_17414333_17414528,I_chr2L_17418395_17418487 chr2L - chr2L_17419079_17420065 chr2L_17419078_17419079;chr2L_17420065_17420066 chr2L_17418488_17419078;chr2L_17420066_17420113 0.00 0.00 0.00 6.90 0.00 0.00 0.00 0.00 0.00 NA 0.00 5.13 0.00 10.53 0.00 6.67 0.00 0.00 0.00 4.26 0.00 2.27 0.00 0.00 0.00 0.00 4.35 0.00 5.56 0.00 0.00 NA 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 NA 5.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.45 0.00 0.00 0.00 N alternative_donor mfrn,I_chr3R_23770737_23770817,I_chr3R_23771063_23771153,I_chr3R_23771063_23772599 chr3R - chr3R_23771063_23772915;chr3R_23771063_23771153 chr3R_23771063_23771137 chr3R_23770974_23771062;chr3R_23772916_23773724 2.50 1.59 3.23 2.56 2.22 3.85 2.86 4.35 4.20 2.56 1.54 2.94 2.17 4.26 4.41 7.84 4.08 4.17 1.64 3.60 3.64 15.38 1.69 1.87 4.00 2.17 2.08 4.21 2.26 2.25 0.85 1.54 3.05 2.25 1.75 2.50 4.07 1.23 1.57 1.12 2.00 4.24 4.65 2.00 1.87 2.00 1.33 2.22 2.00 1.16 1.92 4.55 3.17 2.94 4.17 2.86 2.22 2.52 K intron_retention Scamp,I_chrX_15342614_15342891,I_chrX_15343542_15343655 chrX - chrX_15341864_15341927 chrX_15341863_15341864;chrX_15341927_15341928 chrX_15340937_15341863;chrX_15341928_15342057 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32649 chrX - chrX_12793489_12793555 chrX_12793488_12793489;chrX_12793555_12793556 chrX_12792799_12793488;chrX_12793556_12793773 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 5.00 1.59 0.00 0.00 NA 0.00 0.00 2.22 3.70 0.00 0.00 0.00 0.00 2.94 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 K intron_retention vlc chr2R + chr2R_1589805_1590371 chr2R_1589804_1589805;chr2R_1590371_1590372 chr2R_1589799_1589804;chr2R_1590372_1590451 90.48 NA 90.00 94.44 NA 100.00 93.75 93.75 80.95 NA NA 94.44 88.89 90.00 90.00 81.82 87.50 100.00 92.31 90.00 80.00 NA 100.00 NA 88.89 100.00 100.00 NA NA NA NA NA NA 95.00 NA 87.50 NA NA NA 91.67 NA 78.95 NA NA NA NA NA NA 90.48 NA 78.57 NA NA NA 92.31 NA NA NA K intron_retention rept chr3L + chr3L_19248484_19248541 chr3L_19248483_19248484;chr3L_19248541_19248542 chr3L_19248458_19248483;chr3L_19248542_19250216 100.00 95.65 100.00 100.00 94.12 100.00 97.37 100.00 98.15 100.00 94.12 100.00 95.83 100.00 96.55 94.74 100.00 95.65 96.00 98.46 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 97.30 100.00 96.15 100.00 100.00 100.00 94.74 98.28 100.00 100.00 100.00 96.00 100.00 92.31 95.00 100.00 100.00 K alternative_donor CG7139,I_chr3L_22060948_22061000,I_chr3L_22063306_22063867 chr3L - chr3L_22060948_22061004 chr3L_22060948_22061000 chr3L_22060848_22060947;chr3L_22061005_22061100 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor zip,I_chr2R_20878796_20879147 chr2R - chr2R_20898140_20898898;chr2R_20898140_20898834 chr2R_20898140_20898992 chr2R_20897903_20898139;chr2R_20898993_20898996 0.00 0.00 0.00 0.00 0.00 1.22 0.69 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.82 0.54 0.95 1.03 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 1.08 0.00 0.40 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pitslre,I_chr3L_20764965_20765781,I_chr3L_20764965_20766192,I_chr3L_20764965_20766212,I_chr3L_20766064_20766192,I_chr3L_20766064_20766215,RI_chr3L_20766064_20766893,I_chr3L_20766311_20766664,I_chr3L_20766311_20766893,I_chr3L_20766773_20766893 chr3L + chr3L_20764709_20764767 chr3L_20764708_20764709;chr3L_20764767_20764768 chr3L_20764640_20764708;chr3L_20764768_20764964 72.73 70.83 83.33 76.47 68.75 73.33 80.95 65.71 70.21 80.00 81.25 77.14 81.82 64.00 62.07 77.27 66.67 78.95 76.92 75.68 70.59 34.48 83.33 75.00 84.62 93.75 86.36 83.33 75.00 81.82 63.41 68.42 57.14 72.73 82.35 78.26 68.97 80.00 69.23 61.76 66.67 74.19 61.54 60.00 70.59 78.57 75.00 70.97 66.67 66.67 72.73 63.16 63.64 70.00 67.86 62.50 76.92 66.67 K intron_retention Dlic chrX + chrX_11056808_11057951 chrX_11056807_11056808;chrX_11057951_11057952 chrX_11056549_11056807;chrX_11057952_11058020 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor Asx chr2R + chr2R_10391643_10392672 chr2R_10391875_10392672 chr2R_10392673_10392987;chr2R_10391514_10391642 100.00 92.31 100.00 100.00 100.00 90.00 96.43 96.88 96.77 100.00 100.00 96.55 80.00 100.00 94.12 96.43 100.00 91.67 94.74 96.43 100.00 100.00 95.24 100.00 90.00 93.33 93.75 100.00 100.00 100.00 93.75 NA 100.00 96.88 100.00 93.75 100.00 100.00 100.00 94.44 100.00 100.00 94.12 100.00 NA 100.00 87.50 100.00 100.00 100.00 95.45 100.00 100.00 100.00 95.00 100.00 100.00 88.89 K alternative_donor CG14657 chr3R - chr3R_645633_645832 chr3R_645633_645780 chr3R_645516_645632;chr3R_645833_645870 35.71 NA NA NA NA NA 41.67 41.67 33.33 NA NA 30.00 50.00 NA NA NA NA NA NA 43.75 NA 23.53 NA NA NA NA NA NA NA NA NA NA NA 35.71 NA NA NA NA NA 30.00 NA NA NA NA NA NA NA NA 41.67 NA 25.00 NA NA NA NA NA NA NA K jcn_only_AD CG11357,C_chr3L_4563905_4578759 chr3L + chr3L_4542105_4542642 chr3L_4542249_4542642 chr3L_4542643_4542907;chr3L_4542085_4542104 96.91 NA 100.00 NA NA NA 100.00 97.83 96.00 NA 100.00 100.00 100.00 96.67 97.06 96.39 95.83 95.24 89.29 95.83 85.71 100.00 100.00 NA NA 96.55 100.00 NA NA 100.00 96.77 NA NA 97.96 NA NA NA NA NA 96.55 NA 95.65 95.83 100.00 NA NA 100.00 NA 98.04 NA NA NA NA NA 94.44 NA 95.00 NA K alternative_acceptor CG4165,I_chrX_5317784_5317881,I_chrX_5321743_5321838 chrX + chrX_5317051_5317151 chrX_5317051_5317124 chrX_5316613_5317050;chrX_5317152_5317783 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 2.78 1.82 5.71 0.00 2.74 2.38 0.00 2.27 0.00 0.00 1.64 0.00 0.00 3.08 0.00 0.00 3.85 2.08 0.00 1.82 1.67 0.00 2.17 3.85 0.00 4.35 0.00 0.00 0.00 0.00 K intron_retention Tsp42Ea,CG30159 chr2R + chr2R_2880561_2880625 chr2R_2880560_2880561;chr2R_2880625_2880626 chr2R_2880504_2880560;chr2R_2880626_2881652 25.00 16.13 20.69 37.50 31.58 40.91 45.00 21.62 23.26 25.00 26.92 25.00 25.00 22.22 23.81 19.35 27.78 22.73 29.17 27.27 26.32 33.33 25.00 16.22 52.63 68.42 48.39 53.33 66.67 22.73 23.08 22.22 26.47 26.67 25.00 50.00 15.69 18.42 21.88 19.15 51.85 23.08 25.00 16.22 28.00 25.93 19.05 28.57 23.68 20.00 22.22 24.14 24.00 12.50 26.67 14.29 18.75 30.00 K alternative_donor ben chrX + chrX_13890789_13892127;chrX_13890791_13892127;chrX_13891016_13892127;chrX_13890793_13892127;chrX_13890795_13892127;chrX_13890990_13892127;chrX_13890831_13892127;chrX_13890768_13892127;chrX_13890648_13892127 chrX_13890762_13892127 chrX_13892128_13892800;chrX_13890644_13890647 33.33 NA NA 0.00 NA NA 60.00 0.00 20.00 NA NA 0.00 100.00 0.00 100.00 20.00 NA NA 0.00 66.67 NA 50.00 NA NA NA NA NA NA 100.00 NA NA NA 0.00 33.33 NA NA NA NA NA 0.00 NA 100.00 50.00 NA NA 0.00 NA 100.00 33.33 100.00 NA NA NA NA 25.00 NA 33.33 0.00 K intron_retention mod(r),RI_chrX_515831_515923,I_chrX_516392_517480 chrX + chrX_516392_516466 chrX_516391_516392;chrX_516466_516467 chrX_516292_516391;chrX_516467_517065 8.33 NA 0.00 35.71 NA NA 20.00 20.00 NA NA NA 8.33 NA NA NA 10.53 NA NA NA 17.39 NA NA 14.29 NA NA NA 30.77 NA 14.29 NA 0.00 NA 6.25 15.79 NA NA 0.00 NA NA 12.50 30.77 4.17 NA NA 0.00 7.41 NA 0.00 4.76 NA 30.77 NA NA NA 0.00 NA 0.00 0.00 K jcn_only_AD CG32000,RI_chr4_153025_153811,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_153025_153811;chr4_152998_153811 chr4_152914_153811 chr4_153812_153855;chr4_152891_152913 92.86 NA 95.24 93.94 NA NA 96.23 91.84 91.53 NA NA 84.00 NA 86.21 NA 96.15 NA NA 92.59 93.48 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 88.68 NA NA NA NA NA 77.27 NA 96.55 NA NA NA NA NA 89.19 94.37 NA NA NA NA NA NA NA NA 92.86 K jcn_only_AD Eph,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_640804_640879;chr4_640676_640879 chr4_640734_640879 chr4_640880_640963;chr4_640576_640675 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 3.33 NA 1.28 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 4.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 NA NA K intron_retention VhaM9_7-2,I_chr3L_21533183_21533251,RI_chr3L_21533183_21533368,I_chr3L_21533305_21533368 chr3L + chr3L_21533301_21533368 chr3L_21533300_21533301;chr3L_21533368_21533369 chr3L_21533259_21533300;chr3L_21533369_21533468 0.42 0.47 0.00 0.00 0.00 0.00 0.73 0.42 0.94 0.93 0.00 0.34 0.00 1.15 0.67 1.76 0.00 0.72 1.80 0.61 0.00 0.00 0.00 0.00 0.00 0.86 1.40 3.28 2.01 0.00 0.00 0.63 0.99 0.80 0.00 0.00 0.00 0.00 0.34 0.47 0.00 0.53 0.00 0.45 0.72 0.93 1.10 0.00 0.31 1.21 0.00 1.13 0.37 0.39 0.00 0.89 0.79 1.29 K intron_retention CG31301,I_chr3R_11172776_11172930,RI_chr3R_11173123_11173185 chr3R + chr3R_11172406_11172515 chr3R_11172405_11172406;chr3R_11172515_11172516 chr3R_11171953_11172405;chr3R_11172516_11172874 86.44 89.47 89.19 86.67 86.21 80.65 85.71 97.56 86.44 80.95 79.17 93.22 81.82 85.19 91.43 88.89 87.50 89.29 87.10 86.76 81.82 96.30 97.37 81.08 93.75 97.30 92.31 82.14 88.89 86.36 98.18 85.19 85.42 91.11 96.55 85.71 80.43 88.57 80.00 85.45 94.59 83.82 84.85 84.00 78.95 81.63 87.10 88.37 88.00 77.14 82.61 83.87 76.92 88.89 94.29 89.47 80.43 75.44 K multi_cassette Caps,I_chr4_1249410_1250827,I_chr4_1250965_1254496,I_chr4_1252217_1252262 chr4 + chr4_1250965_1254496 chr4_1250965_1251931;chr4_1252217_1252272;chr4_1252563_1254496 chr4_1251932_1252216;chr4_1252273_1252562 chr4_1250870_1250964;chr4_1254497_1254507 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 K jcn_only_AD spd-2,noncoding_13013,I_chr3L_16587921_16587973 chr3L - chr3L_16587921_16587981 chr3L_16587921_16587973 chr3L_16587821_16587920;chr3L_16587982_16588073 1.69 0.00 0.00 2.27 NA 0.00 NA 2.04 3.64 4.35 NA 1.92 0.00 0.00 2.70 0.00 NA 4.55 0.00 4.76 0.00 0.00 3.57 4.35 6.90 0.00 4.55 0.00 0.00 0.00 7.14 3.12 0.00 0.00 4.76 0.00 0.00 6.12 2.38 2.90 0.00 1.69 4.55 0.00 0.00 0.00 0.00 1.82 2.53 0.00 3.17 4.00 0.00 2.86 2.94 0.00 0.00 2.78 K alternative_acceptor Aats-gly,CG6854 chr3L + chr3L_15088286_15088373 chr3L_15088286_15088354 chr3L_15088282_15088285;chr3L_15088374_15090790 2.76 4.62 4.29 2.05 2.86 1.96 2.94 2.76 2.34 1.54 3.09 2.34 6.45 2.67 1.72 4.27 2.56 0.94 2.50 1.98 1.14 4.93 10.53 6.25 11.43 3.09 25.64 8.24 2.69 3.54 4.20 1.27 2.11 3.52 3.39 6.67 1.37 4.17 2.90 1.61 1.54 2.27 2.78 1.63 0.70 1.67 0.00 1.13 2.48 5.56 9.68 2.00 1.67 4.17 3.01 7.69 6.06 1.39 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814174;chr2R_2814327_2814894;chr2R_2815654_2816013;chr2R_2816342_2816577;chr2R_2816779_2817354;chr2R_2817604_2817753 chr2R_2814175_2814326;chr2R_2814895_2815653;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817355_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 50.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Hcs,I_chr3R_1303481_1304607 chr3R + chr3R_1303270_1303331 chr3R_1303269_1303270;chr3R_1303331_1303332 chr3R_1302263_1303269;chr3R_1303332_1303480 0.00 0.00 0.00 9.52 0.00 5.56 NA 0.00 0.00 NA 0.00 4.88 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52.38 11.11 0.00 NA NA 6.67 NA NA 0.00 0.00 NA 3.23 0.00 12.50 0.00 5.41 6.90 0.00 2.70 NA 0.00 NA 3.85 0.00 0.00 0.00 3.57 5.41 0.00 8.00 NA 0.00 4.76 0.00 0.00 0.00 0.00 K jcn_only_AD CG4266,I_chr2R_17052549_17053657 chr2R - chr2R_17054340_17054403 chr2R_17054340_17054394 chr2R_17054235_17054339;chr2R_17054404_17054436 95.92 94.59 97.78 98.59 97.56 93.94 100.00 94.87 99.04 95.92 100.00 96.67 97.30 92.86 96.97 98.44 89.58 94.83 92.86 96.49 96.15 90.82 96.47 93.65 93.55 91.11 96.88 96.97 89.39 95.83 97.73 97.30 95.04 95.95 93.48 98.25 93.85 90.24 98.46 95.31 90.38 95.35 100.00 95.12 88.16 85.19 96.97 94.57 95.24 97.30 97.18 90.32 92.00 92.59 96.49 97.56 100.00 96.05 K intron_retention I_chr3R_19977468_19977530,Myo95E,F_chr3R_19985049_19985112,F_chr3R_19985127_19985197 chr3R - chr3R_19982898_19982979 chr3R_19982897_19982898;chr3R_19982979_19982980 chr3R_19982566_19982897;chr3R_19982980_19983002 0.00 NA NA NA NA NA NA NA 0.00 NA NA 21.43 NA NA NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA NA 10.53 NA 7.14 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA K intron_retention CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_119376_119430 chr2L_119375_119376;chr2L_119430_119431 chr2L_119292_119375;chr2L_119431_119554 17.07 16.39 14.58 21.70 16.07 20.00 15.66 19.75 16.52 14.29 18.42 18.09 16.18 16.00 22.54 24.00 16.36 11.11 17.65 20.88 23.40 18.03 17.02 14.00 16.67 20.00 35.71 47.17 26.09 14.75 22.03 28.57 16.28 18.18 22.45 27.27 10.00 13.89 4.49 13.86 31.43 23.76 28.21 9.09 18.18 17.07 9.84 25.64 18.81 13.92 12.24 12.79 15.38 18.00 11.11 12.20 10.53 20.00 K cassette noncoding_20684,R_chr4_488962_489782,I_chr4_490841_491639 chr4 + chr4_488621_491639 chr4_488621_489782;chr4_489957_491639 chr4_489783_489956 chr4_488555_488620;chr4_491640_491739 80.00 66.67 80.00 91.67 NA NA 83.33 90.91 80.00 NA NA 66.67 NA 88.89 80.00 70.00 80.00 NA 77.78 90.00 NA NA NA 80.00 NA 71.43 NA NA NA NA 80.00 NA NA 91.67 NA NA NA NA NA NA NA 88.89 NA 66.67 NA 70.00 50.00 NA 81.25 50.00 80.00 NA NA 57.14 NA 75.00 62.50 NA K alternative_acceptor CG3683 chr2R + chr2R_20551980_20552038 chr2R_20551980_20552030 chr2R_20551911_20551979;chr2R_20552039_20552202 88.89 NA 100.00 95.00 100.00 92.86 87.50 61.90 92.86 NA NA 90.91 NA NA 85.71 100.00 100.00 90.91 100.00 92.86 100.00 NA NA NA NA 100.00 NA NA NA NA 77.78 80.00 NA 92.31 NA NA NA NA NA 39.13 55.56 88.00 87.50 NA 88.89 87.50 NA 88.89 78.26 NA NA NA NA NA 80.00 NA NA 88.24 K alternative_donor Pegarn chr3L + chr3L_12783425_12784534;chr3L_12783350_12784534 chr3L_12783483_12784534 chr3L_12784535_12784733;chr3L_12783320_12783349 33.33 NA NA NA NA NA 66.67 50.00 33.33 NA NA NA NA NA NA 18.18 NA NA NA 37.50 NA NA NA NA NA NA NA NA NA NA 33.33 50.00 20.00 NA NA NA NA NA NA NA 12.50 20.00 NA NA NA 22.22 NA 14.29 33.33 NA NA NA NA NA NA NA NA 33.33 K intron_retention kat80,I_chrX_16162233_16162306,I_chrX_16168725_16169287 chrX - chrX_16164614_16168316 chrX_16164613_16164614;chrX_16168316_16168317 chrX_16164272_16164613;chrX_16168317_16168534 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 6.25 3.45 4.76 0.00 0.00 0.00 4.17 3.85 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 2.04 0.00 0.00 2.13 0.00 6.25 0.00 0.00 0.00 4.92 0.00 0.00 7.14 0.00 0.00 0.00 0.00 1.92 1.69 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.85 0.00 K intron_retention CG8235,CG13745,I_chr2R_4825500_4825702 chr2R - chr2R_4815390_4815445 chr2R_4815389_4815390;chr2R_4815445_4815446 chr2R_4814581_4815389;chr2R_4815446_4815626 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.74 K alternative_donor hts,I_chr2R_15311185_15312327,I_chr2R_15311303_15312026 chr2R - chr2R_15298777_15306061 chr2R_15298777_15298865 chr2R_15298665_15298776;chr2R_15306062_15306110 1.32 2.33 1.85 1.92 0.00 2.50 1.72 1.09 1.46 0.00 2.70 1.85 2.22 2.22 1.72 1.54 2.94 2.56 2.38 1.32 0.00 0.00 3.23 0.00 0.00 2.27 2.63 0.00 0.00 0.00 2.13 0.00 0.00 1.19 0.00 3.33 0.00 0.00 0.00 1.43 0.00 2.27 2.70 2.33 0.00 0.00 0.00 2.08 1.75 0.00 2.33 0.00 0.00 0.00 1.72 0.00 0.00 0.00 K alternative_donor Smr,I_chrX_12625852_12636351,REI_chrX_12635675_12636351 chrX - chrX_12625852_12636351 chrX_12625852_12636345 chrX_12625752_12625851;chrX_12636352_12636441 55.00 NA NA 66.67 NA NA NA NA 60.00 NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA NA N alternative_acceptor nimB1 chr2L + chr2L_13964457_13964534 chr2L_13964457_13964513 chr2L_13964370_13964456;chr2L_13964535_13964602 3.10 3.77 2.63 6.25 2.27 1.82 4.76 6.90 4.00 0.00 0.00 4.23 9.09 5.77 5.00 6.90 4.88 3.12 6.82 6.85 5.00 0.00 4.44 0.00 0.00 0.00 3.85 NA 0.00 0.00 1.35 3.57 2.38 3.57 4.17 0.00 3.08 5.41 2.78 5.26 2.63 2.15 0.00 0.00 0.00 2.60 5.00 1.54 5.83 3.57 2.50 4.35 0.00 1.85 3.28 3.12 3.01 1.94 K intron_retention Kr-h1 chr2L + chr2L_6095154_6095237 chr2L_6095153_6095154;chr2L_6095237_6095238 chr2L_6093793_6095153;chr2L_6095238_6096498 0.00 0.00 0.00 1.20 0.00 0.00 0.00 3.17 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 6.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.81 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 K intron_retention klar,I_chr3L_462559_472609,RI_chr3L_517594_539898 chr3L - chr3L_445912_449996 chr3L_445911_445912;chr3L_449996_449997 chr3L_445732_445911;chr3L_449997_450170 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RpL27,I_chr3R_21510239_21510298,RI_chr3R_21510239_21510441,I_chr3R_21510239_21510464,I_chr3R_21510239_21510656,I_chr3R_21510239_21510726 chr3R - chr3R_21510239_21510464;chr3R_21510239_21510656;chr3R_21510239_21510739;chr3R_21510239_21510680;chr3R_21510239_21510746 chr3R_21510239_21510298 chr3R_21510139_21510238;chr3R_21510747_21510756 3.12 0.00 3.23 1.96 3.23 0.00 18.52 2.63 8.51 0.00 0.00 4.88 7.69 14.29 0.00 9.09 3.45 3.85 3.23 4.26 0.00 6.82 12.50 2.78 0.00 0.00 9.09 12.50 12.24 0.00 0.00 0.00 0.00 3.08 0.00 6.25 0.00 0.00 0.00 3.12 0.00 1.47 3.12 3.12 1.14 5.56 7.41 0.00 4.41 3.57 22.22 10.00 1.45 20.00 1.10 3.85 7.27 2.04 K alternative_acceptor CG8273,CG8301 chr3R + chr3R_5405819_5405880 chr3R_5405819_5405877 chr3R_5403779_5405818;chr3R_5405881_5406947 100.00 NA 100.00 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 91.67 100.00 100.00 NA 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 NA NA 87.50 100.00 100.00 100.00 NA K intron_retention CG5674 chr2L + chr2L_17963606_17969371 chr2L_17963605_17963606;chr2L_17969371_17969372 chr2L_17963396_17963605;chr2L_17969372_17969518 0.00 0.00 0.00 NA NA NA 10.53 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 NA 21.43 0.00 2.94 0.00 6.12 9.52 0.00 0.00 0.00 0.00 6.67 10.42 0.00 NA 0.00 0.00 3.33 7.41 0.00 0.00 0.00 0.00 3.57 0.00 5.56 0.00 0.00 8.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 N intron_retention Iap2,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11821304_11821703 chr2R_11821303_11821304;chr2R_11821703_11821704 chr2R_11820289_11821303;chr2R_11821704_11822085 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 78.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 37.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_acceptor CG31919,CG33995,F_chr2L_5045484_5046146 chr2L + chr2L_5045926_5046146 chr2L_5045926_5045981 chr2L_5045822_5045925;chr2L_5046147_5046246 0.00 0.00 0.00 3.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Sdc,RI_chr2R_17286086_17286391,I_chr2R_17286089_17286391,I_chr2R_17286819_17367595,I_chr2R_17324594_17367595 chr2R - chr2R_17286086_17286679 chr2R_17286089_17286679 chr2R_17286680_17286818;chr2R_17286037_17286085 31.94 31.94 32.73 29.92 28.30 31.75 34.33 29.47 35.76 35.71 41.94 31.75 25.81 27.94 36.62 35.71 38.18 31.25 39.71 33.76 41.51 33.85 36.67 28.12 24.62 37.74 29.33 24.00 34.15 38.14 30.30 32.65 38.92 26.53 33.33 39.39 31.03 38.16 38.04 36.67 37.70 30.84 32.08 29.20 24.36 32.32 24.56 28.33 31.58 16.67 27.40 26.00 28.92 22.73 36.00 33.33 23.53 28.21 K intron_retention GlcAT-P,I_chr3L_11172482_11172633 chr3L - chr3L_11172482_11172629 chr3L_11172481_11172482;chr3L_11172629_11172630 chr3L_11172382_11172481;chr3L_11172630_11172816 7.69 10.42 6.73 21.21 8.74 5.00 15.12 4.35 7.59 2.13 4.03 5.52 7.44 8.54 9.38 6.38 8.08 5.15 3.85 6.56 5.41 15.46 8.99 7.00 11.27 9.17 21.50 10.71 17.54 11.11 7.41 7.94 6.96 7.69 8.62 10.26 7.65 5.61 7.32 7.91 23.40 7.50 7.07 10.00 10.91 4.88 11.54 12.10 6.30 4.69 8.16 10.91 7.69 8.16 6.72 7.69 9.32 6.84 K intron_retention CG5224 chr2R + chr2R_14391355_14391750 chr2R_14391354_14391355;chr2R_14391750_14391751 chr2R_14391246_14391354;chr2R_14391751_14392597 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.21 0.83 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 K intron_retention Ptp99A,I_chr3R_25302126_25302175 chr3R + chr3R_25305548_25307191 chr3R_25305547_25305548;chr3R_25307191_25307192 chr3R_25305229_25305547;chr3R_25307192_25307198 0.00 NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 7.69 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K alternative_last_exon scny,I_chr3L_5763034_5768288 chr3L + chr3L_5763034_5768288 chr3L_5763034_5764717 chr3L_5768289_5769385 chr3L_5764718_5765475 chr3L_5762934_5763033 98.59 99.22 99.21 90.48 100.00 99.07 98.45 98.14 99.59 99.05 97.70 99.03 97.83 98.97 98.44 96.21 98.85 98.91 98.97 99.60 98.88 93.60 98.13 99.35 97.94 96.67 98.68 98.52 95.54 98.59 99.03 95.45 98.46 98.84 100.00 97.32 99.54 98.59 99.51 98.37 97.56 99.57 98.88 98.61 98.18 98.29 99.03 98.39 99.55 97.83 98.44 98.95 98.23 97.67 98.37 98.91 97.06 98.19 K cassette bun,I_chr2L_12477167_12504078,I_chr2L_12477167_12507485,I_chr2L_12520177_12536274,I_chr2L_12537393_12537634,RI_chr2L_12540901_12546409 chr2L - chr2L_12477167_12504078 chr2L_12477167_12498524;chr2L_12498904_12504078 chr2L_12498525_12498903 chr2L_12477115_12477166;chr2L_12504079_12504132 66.67 60.00 83.33 66.67 66.67 71.43 65.00 52.63 55.17 83.33 66.67 56.25 30.00 50.00 81.82 45.45 45.45 42.86 75.00 58.82 37.50 72.22 62.50 70.00 85.71 55.56 78.57 85.71 100.00 60.00 70.00 75.00 80.00 68.42 88.89 90.91 92.86 87.50 72.73 62.50 66.67 50.00 50.00 52.94 100.00 62.50 62.50 41.67 66.67 75.00 71.43 50.00 33.33 75.00 55.56 62.50 71.43 NA K alternative_acceptor CG31368,F_chr3R_7709658_7714233 chr3R + chr3R_7708710_7708770 chr3R_7708710_7708749 chr3R_7708517_7708709;chr3R_7708771_7709251 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 NA 0.00 0.00 0.00 3.70 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 2.86 2.78 0.00 0.00 0.00 2.78 0.00 4.76 2.94 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.70 0.00 NA NA 4.76 NA NA NA K intron_retention bbc,I_chr2R_9376554_9377246,REI_chr2R_9379401_9381986 chr2R - chr2R_9375638_9377246 chr2R_9375637_9375638;chr2R_9377246_9377247 chr2R_9375479_9375637;chr2R_9377247_9377346 98.15 100.00 100.00 100.00 95.45 96.00 100.00 100.00 98.11 100.00 100.00 98.15 96.77 100.00 100.00 98.44 95.45 100.00 100.00 98.59 100.00 95.00 100.00 97.67 100.00 96.77 95.12 97.56 97.30 96.55 97.30 96.55 100.00 94.87 90.48 100.00 91.49 96.77 97.14 95.65 100.00 100.00 100.00 96.15 100.00 100.00 100.00 96.30 97.73 100.00 100.00 94.74 94.12 96.67 100.00 97.06 100.00 95.00 K intron_retention ps,I_chr3R_5243723_5265067,I_chr3R_5243723_5270765,noncoding_15575,I_chr3R_5245770_5265067,I_chr3R_5245770_5269732,I_chr3R_5258562_5264836,I_chr3R_5262841_5265067,RI_chr3R_5262841_5266402,I_chr3R_5265428_5266402,I_chr3R_5265428_5269732,I_chr3R_5265428_5270765,CG16777,I_chr3R_5269733_5270765 chr3R + chr3R_5245770_5257750 chr3R_5245769_5245770;chr3R_5257750_5257751 chr3R_5245740_5245769;chr3R_5257751_5258205 1.14 3.33 0.00 5.17 0.00 0.00 3.12 3.33 3.25 NA 0.00 0.88 3.45 5.00 0.00 3.60 0.00 2.00 3.28 1.20 0.00 7.69 1.25 4.55 0.00 0.00 1.41 8.33 4.55 3.03 0.00 NA 4.35 3.31 0.00 0.00 2.20 0.00 0.00 8.00 NA 1.08 7.84 4.00 NA 4.35 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 NA K multi_cassette lap,I_chr3R_3017854_3019314 chr3R + chr3R_3017854_3019314 chr3R_3017854_3018261;chr3R_3018377_3018442;chr3R_3018735_3019314 chr3R_3018262_3018376;chr3R_3018443_3018734 chr3R_3017754_3017853;chr3R_3019315_3019410 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG32343,I_chr3L_326540_326703,RI_chr3L_326725_326866 chr3L - chr3L_326540_326866 chr3L_326725_326866 chr3L_326867_326966;chr3L_326440_326539 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.13 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Gs2 chrX + chrX_11318137_11318297;chrX_11318137_11318302 chrX_11318137_11318314 chrX_11318068_11318136;chrX_11318315_11318487 0.00 0.00 0.00 0.00 NA 0.00 2.44 NA 2.44 0.00 NA 0.00 NA NA 0.00 0.00 NA NA 0.00 1.59 NA 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.75 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA K intron_retention CG8920 chr2R + chr2R_16213043_16213100 chr2R_16213042_16213043;chr2R_16213100_16213101 chr2R_16212894_16213042;chr2R_16213101_16213478 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 3.33 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention TFAM,RI_chr3R_16404530_16404635 chr3R - chr3R_16402447_16402527 chr3R_16402446_16402447;chr3R_16402527_16402528 chr3R_16401868_16402446;chr3R_16402528_16402741 14.29 11.86 9.38 5.88 13.89 16.67 14.29 21.88 13.56 13.04 17.65 14.75 17.65 26.67 12.20 14.81 0.00 21.05 20.83 15.38 16.67 23.26 14.10 14.12 26.00 14.29 11.29 12.07 37.50 15.15 23.08 13.79 24.24 10.91 17.07 20.37 15.07 15.79 15.15 9.41 28.00 13.24 12.50 13.33 8.51 16.92 12.90 20.51 17.86 12.50 11.11 8.57 9.68 16.67 10.81 11.94 9.64 20.69 K intron_retention RanGap chr2L + chr2L_19446027_19446096 chr2L_19446026_19446027;chr2L_19446096_19446097 chr2L_19445345_19446026;chr2L_19446097_19446598 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 5.00 0.00 0.00 0.00 2.13 2.78 0.00 0.00 2.27 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention rl,I_chr2RHet_199154_207044,RI_chr2RHet_203476_203577,RI_chr2RHet_203592_207044,I_chr2RHet_232696_247338,RI_chr2RHet_240197_247338 chr2RHet + chr2RHet_198817_198981 chr2RHet_198816_198817;chr2RHet_198981_198982 chr2RHet_198804_198816;chr2RHet_198982_199153 96.15 100.00 92.31 97.14 NA 88.89 90.74 97.44 94.59 NA NA 96.43 92.86 93.75 NA 97.30 NA 87.50 94.44 96.15 NA NA 100.00 90.91 90.00 100.00 93.75 NA 100.00 88.89 100.00 NA NA 90.00 100.00 93.75 88.89 NA 90.00 100.00 NA 100.00 100.00 100.00 NA 88.89 NA NA 96.67 90.91 100.00 93.33 NA NA 100.00 100.00 100.00 NA K intron_retention Synd chr3R + chr3R_16661707_16663306 chr3R_16661706_16661707;chr3R_16663306_16663307 chr3R_16661597_16661706;chr3R_16663307_16663644 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 2.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention vib,RI_chr3R_15051793_15051920,RI_chr3R_15051793_15052186 chr3R - chr3R_15051793_15052202 chr3R_15051792_15051793;chr3R_15052202_15052203 chr3R_15051737_15051792;chr3R_15052203_15052286 3.31 5.61 2.44 3.31 0.00 1.96 10.00 5.30 3.03 3.33 1.37 5.42 7.46 2.56 1.61 2.01 0.00 2.67 2.02 2.60 1.16 6.25 5.11 3.70 10.00 5.31 4.67 7.55 11.59 1.03 2.78 0.00 3.64 2.84 6.32 5.33 4.35 4.76 6.86 4.24 7.02 2.73 3.03 4.26 2.35 1.49 2.26 0.00 2.93 3.48 4.27 2.63 4.27 3.81 3.31 2.68 3.23 2.41 K intron_retention wge chr3R - chr3R_18543064_18545592 chr3R_18543063_18543064;chr3R_18545592_18545593 chr3R_18542929_18543063;chr3R_18545593_18545739 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 6.25 0.00 0.00 0.00 2.53 0.00 3.92 0.00 0.00 0.00 0.00 4.44 10.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.26 0.00 0.00 2.78 0.00 0.00 0.00 3.33 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 K alternative_donor cact,I_chr2L_16313451_16314337,RI_chr2L_16314859_16315116,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16313451_16314450 chr2L_16313451_16314337 chr2L_16313351_16313450;chr2L_16314451_16314708 9.63 5.92 12.50 22.48 5.36 14.67 11.19 12.05 7.80 11.36 14.63 9.76 7.00 7.41 13.83 14.86 6.60 11.76 7.63 13.20 9.30 3.88 9.13 9.14 10.53 14.13 9.95 20.78 12.26 5.50 14.29 6.49 10.00 14.20 6.52 22.22 6.74 6.25 6.15 8.60 13.16 9.19 9.59 6.63 10.00 9.63 9.25 22.06 10.27 6.93 9.30 8.79 7.78 10.81 11.11 8.24 8.60 15.48 K intron_retention how chr3R + chr3R_17897764_17900173 chr3R_17897763_17897764;chr3R_17900173_17900174 chr3R_17897461_17897763;chr3R_17900174_17900666 7.14 6.67 14.29 14.29 0.00 NA 21.74 20.83 6.52 0.00 NA 9.52 NA NA NA 14.29 14.29 0.00 18.75 9.38 NA 5.26 6.82 7.69 11.76 NA 0.00 7.41 NA 10.00 8.00 NA 6.25 9.09 4.76 5.56 11.43 5.26 7.14 6.25 NA 6.25 6.67 6.98 NA 6.67 0.00 0.00 15.00 7.41 7.14 0.00 4.76 10.53 0.00 10.53 9.52 NA K intron_retention Upf2,I_chrX_7969268_7969358,I_chrX_7969312_7969358 chrX - chrX_7969293_7969358 chrX_7969292_7969293;chrX_7969358_7969359 chrX_7969212_7969292;chrX_7969359_7969458 100.00 NA NA 100.00 NA 100.00 100.00 93.75 100.00 NA NA 92.31 NA NA 100.00 100.00 NA NA 100.00 100.00 NA 88.89 90.00 100.00 NA 100.00 100.00 100.00 NA NA 90.91 NA NA 100.00 NA NA 100.00 NA NA 91.67 NA 100.00 100.00 100.00 NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K jcn_only_AA RpS3A,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87549_87717;chr4_87533_87717 chr4_87648_87717 chr4_87718_87817;chr4_87466_87532 58.06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 58.06 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CHES-1-like,I_chrX_7584030_7588818 chrX - chrX_7584030_7590509 chrX_7584029_7584030;chrX_7590509_7590510 chrX_7583930_7584029;chrX_7590510_7590564 59.09 47.62 69.57 56.41 40.00 73.91 63.04 53.66 80.00 NA 40.00 70.21 56.25 78.95 59.09 76.27 65.22 53.33 69.23 70.97 NA 14.29 59.09 45.45 NA 58.33 42.86 NA NA 70.00 76.67 NA NA 72.00 76.47 NA 30.43 NA NA 47.62 NA 70.59 72.00 33.33 NA NA NA 70.00 82.69 NA 50.00 50.00 NA NA 56.52 NA NA NA N alternative_donor CG31619 chr2L + chr2L_21711411_21712768 chr2L_21711681_21712768 chr2L_21712769_21712966;chr2L_21711315_21711410 5.77 3.95 10.61 5.19 4.48 5.88 13.64 5.41 7.56 1.39 40.00 4.89 2.78 5.88 7.89 6.52 7.04 4.76 6.15 6.21 33.33 7.69 3.25 4.00 8.47 10.00 9.21 6.67 12.90 6.02 15.53 8.57 4.21 5.71 3.77 8.11 3.52 3.61 2.61 6.40 8.89 5.92 4.92 3.38 5.77 3.61 6.15 6.59 4.49 5.71 5.21 4.23 2.70 5.26 4.44 6.67 1.72 2.15 K intron_retention Dhc36C,I_chr2L_17519946_17520383 chr2L + chr2L_17519946_17520364 chr2L_17519945_17519946;chr2L_17520364_17520365 chr2L_17519846_17519945;chr2L_17520365_17520404 83.33 90.00 88.89 100.00 90.00 90.00 93.75 80.95 78.12 NA 88.89 73.33 100.00 88.89 75.00 90.91 60.00 77.78 27.78 83.33 NA 38.46 NA NA NA NA NA NA NA NA 92.86 NA NA 68.42 NA NA NA NA NA 100.00 NA 68.18 NA NA NA NA NA NA 81.82 NA NA NA NA NA 88.89 NA 78.57 80.00 K alternative_donor Pomp,I_chr2L_20788087_20788402 chr2L + chr2L_20788087_20788402 chr2L_20788116_20788402 chr2L_20788403_20788502;chr2L_20787987_20788086 100.00 100.00 100.00 99.33 100.00 99.22 100.00 100.00 99.55 99.06 100.00 99.62 98.82 100.00 100.00 100.00 100.00 99.15 100.00 99.59 100.00 97.56 99.70 99.60 100.00 100.00 99.56 100.00 99.11 100.00 99.31 100.00 100.00 99.30 99.19 100.00 99.71 99.56 100.00 99.49 98.96 99.63 100.00 100.00 100.00 99.46 99.45 100.00 99.44 100.00 100.00 100.00 100.00 99.58 100.00 99.57 100.00 100.00 K alternative_acceptor Pitslre,I_chr3L_20764965_20765781,I_chr3L_20764965_20766192,I_chr3L_20764965_20766212,I_chr3L_20766064_20766192,I_chr3L_20766064_20766215,RI_chr3L_20766064_20766893,I_chr3L_20766311_20766664,I_chr3L_20766311_20766893,I_chr3L_20766773_20766893 chr3L + chr3L_20764965_20765704;chr3L_20764965_20766215 chr3L_20764965_20766893 chr3L_20764896_20764964;chr3L_20766894_20766993 58.82 68.00 57.14 50.00 54.55 33.33 38.10 40.00 48.78 85.00 69.23 43.75 28.57 41.18 16.67 47.83 33.33 46.67 28.57 51.52 22.22 34.21 59.52 71.43 69.23 27.27 63.64 76.79 57.14 66.67 26.32 58.82 64.71 44.44 69.23 67.86 79.25 79.49 69.77 59.02 58.82 56.41 36.36 47.06 80.95 62.50 69.23 67.57 52.94 74.07 66.67 63.64 70.83 75.00 36.84 74.07 73.68 52.94 K alternative_last_exon Atf6,noncoding_4459 chr2R + chr2R_1032364_1040293 chr2R_1032364_1035705,chr2R_1032364_1035679 chr2R_1040294_1044872 chr2R_1035706_1036661 chr2R_1032236_1032363 93.94 95.65 91.67 93.33 90.91 100.00 96.88 96.83 98.51 85.71 92.31 97.78 100.00 93.94 94.44 97.18 95.00 93.75 97.06 100.00 100.00 90.91 90.91 94.74 81.25 94.74 91.67 90.00 90.91 93.33 95.65 100.00 93.75 98.31 94.74 85.00 90.00 92.31 88.89 93.33 90.00 97.73 100.00 95.00 77.78 88.89 92.31 100.00 98.41 92.86 96.55 95.00 92.31 80.00 95.45 92.31 88.24 95.83 K intron_retention CG8031 chr3R - chr3R_8835350_8835410 chr3R_8835349_8835350;chr3R_8835410_8835411 chr3R_8835281_8835349;chr3R_8835411_8835492 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 1.63 0.00 0.00 3.70 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Hrb27C,I_chr2L_6924401_6924743 chr2L + chr2L_6921074_6922730 chr2L_6921073_6921074;chr2L_6922730_6922731 chr2L_6921066_6921073;chr2L_6922731_6922826 60.00 NA NA 58.33 NA NA 90.77 53.85 59.26 NA NA 66.67 66.67 NA NA 75.00 NA NA 54.55 80.00 NA NA NA 45.45 NA 75.00 60.00 NA NA NA NA NA 88.89 46.67 NA 91.89 NA NA NA NA NA 60.00 54.55 NA NA NA NA 66.67 47.62 NA NA NA NA NA 45.45 NA NA NA K alternative_acceptor Msp-300,I_chr2L_5197634_5197866 chr2L + chr2L_5203743_5204462 chr2L_5203743_5204450 chr2L_5203116_5203742;chr2L_5204463_5204592 45.74 48.65 54.17 37.50 53.52 58.23 45.74 42.86 51.52 31.08 16.88 47.40 51.02 59.74 48.91 47.92 54.12 35.87 47.76 55.61 15.66 43.21 43.66 44.04 44.44 56.14 43.02 70.21 38.00 49.21 37.50 54.35 42.25 52.67 48.44 28.17 44.68 53.62 52.38 45.67 38.46 50.00 54.84 45.33 59.62 47.37 42.65 47.42 42.45 56.92 43.24 44.44 40.00 45.31 58.25 43.02 39.39 41.10 K intron_retention ferrochelatase chr3R - chr3R_27637044_27637098 chr3R_27637043_27637044;chr3R_27637098_27637099 chr3R_27636939_27637043;chr3R_27637099_27637200 2.91 5.33 2.30 5.30 0.00 6.15 4.42 3.70 3.19 4.48 3.06 2.38 3.75 2.60 1.83 2.04 2.41 2.94 5.95 6.03 2.41 1.24 3.16 2.92 2.91 1.72 11.90 8.97 1.91 2.61 4.11 3.80 2.42 6.72 1.15 4.44 3.76 3.03 1.57 2.46 3.87 2.65 0.00 2.86 1.96 2.82 0.95 1.63 4.83 5.52 2.29 1.82 4.17 1.89 3.85 3.76 1.94 0.00 K jcn_only_AA Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754284_15755172;chrX_15754284_15755148;chrX_15754284_15755021;chrX_15754284_15755184;chrX_15754284_15755256;chrX_15754284_15754777;chrX_15754284_15755416;chrX_15754284_15755268 chrX_15754284_15755409 chrX_15754256_15754283 79.29 89.83 78.63 88.02 83.67 78.76 82.33 83.54 84.02 67.16 82.05 65.06 65.32 78.67 76.27 83.82 86.24 80.65 81.94 70.79 81.40 82.00 79.29 65.77 78.57 66.67 87.40 77.97 86.57 69.00 78.09 77.19 68.29 76.54 74.56 54.63 76.77 83.70 79.35 74.83 70.27 81.94 75.78 82.53 79.49 73.91 81.00 70.00 77.74 80.36 82.27 81.63 84.21 82.14 80.00 76.53 85.59 75.31 K intron_retention CG6454,I_chr3R_20175958_20178905 chr3R + chr3R_20175194_20175247 chr3R_20175193_20175194;chr3R_20175247_20175248 chr3R_20174894_20175193;chr3R_20175248_20175549 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 N jcn_only_AA CG32594 chrX + chrX_14918988_14924618 chrX_14918988_14919783 chrX_14918583_14918987;chrX_14924619_14924880 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9723 chrX - chrX_16548102_16548168 chrX_16548101_16548102;chrX_16548168_16548169 chrX_16547124_16548101;chrX_16548169_16549044 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.11 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor bip2,RI_chr4_481674_487126,RI_chr4_483128_487126,RI_chr4_486609_487126 chr4 - chr4_485355_485422 chr4_485367_485422 chr4_485423_485854;chr4_485008_485354 91.67 NA 88.89 NA NA NA 86.96 100.00 100.00 NA NA 100.00 87.50 90.91 90.00 95.00 88.89 NA 100.00 100.00 88.89 NA 87.50 NA NA NA NA NA NA NA 91.67 NA NA 95.45 NA NA NA NA NA NA NA 94.12 88.89 90.00 NA NA NA 100.00 94.44 NA 88.89 NA NA NA 92.86 NA NA NA K intron_retention CG9940 chrX - chrX_13582036_13582104 chrX_13582035_13582036;chrX_13582104_13582105 chrX_13581823_13582035;chrX_13582105_13582194 0.00 0.00 0.00 2.20 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 3.03 5.63 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention glob1,I_chr3R_11723738_11727000 chr3R - chr3R_11723738_11726731 chr3R_11723737_11723738;chr3R_11726731_11726732 chr3R_11723638_11723737;chr3R_11726732_11727202 0.00 0.00 0.00 12.50 NA NA 0.00 4.55 3.03 NA NA 0.00 NA NA 0.00 7.69 0.00 NA 0.00 0.00 0.00 15.38 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA K intron_retention CG7630,I_chr3L_17418741_17418811,I_chr3L_17419180_17419283 chr3L + chr3L_17419180_17419238 chr3L_17419179_17419180;chr3L_17419238_17419239 chr3L_17419111_17419179;chr3L_17419239_17419348 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.67 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Mical,I_chr3R_5828974_5830131,noncoding_15780,I_chr3R_5829878_5830377,I_chr3R_5834577_5835458,I_chr3R_5843939_5844218,I_chr3R_5847106_5863537,I_chr3R_5863483_5863537,I_chr3R_5863613_5868513 chr3R - chr3R_5829373_5830377 chr3R_5829372_5829373;chr3R_5830377_5830378 chr3R_5829096_5829372;chr3R_5830378_5830477 10.81 9.38 NA 36.36 5.88 NA 18.52 33.33 15.52 4.17 10.53 26.09 11.11 0.00 27.78 46.67 NA 16.67 26.32 20.00 15.00 6.67 6.12 15.38 20.00 6.67 12.82 20.83 7.27 8.00 30.77 9.68 4.69 18.52 5.71 8.33 10.81 0.00 7.14 11.48 5.56 19.35 NA 11.63 0.00 5.00 9.80 7.14 18.75 11.54 13.64 16.67 6.67 7.41 20.83 5.71 7.69 8.33 K alternative_donor CG1599,RI_chr2R_5728855_5728907,I_chr2R_5728977_5729044,I_chr2R_5729744_5729805 chr2R - chr2R_5728855_5728912 chr2R_5728855_5728907 chr2R_5728755_5728854;chr2R_5728913_5728976 1.23 1.09 1.94 1.40 1.27 1.20 0.62 2.27 1.37 2.27 1.41 2.63 1.15 1.09 1.75 0.69 1.33 1.09 0.89 1.05 2.90 1.43 0.00 1.11 0.00 2.33 0.94 1.92 1.23 0.00 2.40 1.14 1.30 1.42 3.17 0.00 1.04 1.30 1.72 0.00 1.04 1.67 1.06 1.06 1.98 1.68 1.04 1.27 1.91 1.90 1.19 1.32 0.00 0.00 0.81 0.79 0.80 2.22 K alternative_last_exon Eps-15,I_chr2R_20660319_20660496 chr2R - chr2R_20657207_20659247,chr2R_20657585_20659247 chr2R_20658848_20659247 chr2R_20656942_20657206 chr2R_20657737_20658847 chr2R_20659248_20659313 2.25 2.90 1.59 4.48 2.22 2.00 5.88 3.12 2.80 0.00 3.03 3.16 4.08 3.64 3.12 2.56 2.38 1.82 1.75 4.46 2.50 2.25 2.80 2.27 3.85 1.37 2.50 6.25 0.00 1.09 3.03 3.03 1.24 2.30 2.90 1.05 1.15 1.49 1.14 2.29 1.74 1.60 1.85 2.99 1.00 1.67 2.90 1.90 3.57 1.30 2.06 2.04 1.23 1.52 1.47 1.06 2.25 2.03 K alternative_donor CG4877 chr3L + chr3L_16380053_16380120 chr3L_16380057_16380120 chr3L_16380121_16382448;chr3L_16379773_16380052 100.00 100.00 90.00 94.44 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 88.89 100.00 100.00 100.00 87.50 94.74 NA 90.91 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 90.00 85.71 100.00 100.00 100.00 100.00 100.00 88.89 92.31 100.00 88.89 100.00 87.50 100.00 100.00 NA NA 88.24 100.00 100.00 100.00 NA NA NA 100.00 NA NA 100.00 K alternative_acceptor CG8213 chr2R - chr2R_4858557_4858929 chr2R_4858755_4858929 chr2R_4858930_4862949;chr2R_4858370_4858556 22.22 27.27 30.00 63.16 NA NA NA NA 9.09 NA NA 35.71 NA NA 22.22 NA NA NA NA 12.50 NA 16.67 10.53 17.65 20.00 42.86 14.29 30.00 20.83 16.67 15.38 NA 35.71 36.36 NA 50.00 26.32 NA 25.00 26.32 18.75 29.41 NA 22.22 18.75 25.00 23.08 21.05 27.27 NA 7.14 NA NA 12.50 NA 20.00 NA 30.77 K alternative_acceptor CG9399,I_chr3R_5403032_5403329 chr3R - chr3R_5399352_5399524;chr3R_5399255_5399524 chr3R_5399318_5399524 chr3R_5399525_5399559;chr3R_5399076_5399254 71.43 NA NA 75.00 NA 60.00 55.56 NA 67.86 73.33 84.62 75.00 NA 45.45 73.68 85.71 42.86 NA NA 47.37 75.00 NA NA 73.33 NA 90.91 71.43 NA NA NA 71.43 NA 66.67 90.00 40.00 NA 72.73 NA 40.00 45.00 66.67 NA 71.43 70.00 60.00 56.25 71.43 58.33 NA 77.78 83.33 NA 90.00 77.78 NA NA NA 50.00 K intron_retention I_chr3R_17177101_17200781,mod(mdg4),RI_chr3R_17183087_17183245,RI_chr3R_17183087_17183726,I_chr3R_17183481_17200781,I_chr3R_17183927_17184513,I_chr3R_17183927_17185306,RI_chr3R_17184319_17184513,I_chr3R_17184319_17185084,I_chr3R_17184319_17185284,noncoding_18168,RI_chr3R_17184792_17185306,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,RI_chr3R_17189607_17189988,I_chr3R_17190098_17190207,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17182691_17200781 chr3R_17182690_17182691;chr3R_17200781_17200782 chr3R_17182533_17182690;chr3R_17200782_17200881 30.00 NA NA 46.15 NA NA NA 57.14 30.00 NA NA 38.89 NA NA NA NA NA NA NA 23.81 NA NA NA NA NA 25.00 NA NA NA NA NA 12.50 NA 31.82 41.67 NA 21.43 NA 16.67 26.32 NA 42.86 NA NA NA 11.76 NA 9.09 45.45 30.77 NA NA NA NA 31.58 NA NA 14.29 K intron_retention Tfb1 chr2R + chr2R_10250627_10250749 chr2R_10250626_10250627;chr2R_10250749_10250750 chr2R_10250565_10250626;chr2R_10250750_10251018 63.64 NA NA 54.55 NA NA NA NA 70.00 NA NA NA NA NA NA NA NA NA NA 77.78 NA NA 87.50 NA NA NA 100.00 NA 64.29 47.06 90.91 63.64 54.84 66.67 NA 100.00 55.56 NA NA 31.58 45.45 45.45 NA NA 40.00 70.00 NA 57.14 72.73 NA NA NA NA NA NA NA NA 37.50 K alternative_acceptor ari-1,I_chrX_18026911_18026975 chrX - chrX_18031080_18031608 chrX_18031084_18031608 chrX_18031609_18031714;chrX_18030475_18031079 85.71 77.78 78.57 71.43 66.67 88.89 95.00 95.45 89.58 100.00 72.73 71.43 90.00 75.00 82.35 87.50 92.31 91.67 88.89 85.71 100.00 77.78 100.00 72.73 90.00 84.62 81.82 NA 76.92 86.67 85.71 NA 86.96 77.78 NA NA 80.00 NA 66.67 90.00 NA 79.17 100.00 80.00 NA 100.00 87.50 93.75 84.62 75.00 85.71 NA NA NA 68.75 NA NA 65.00 K alternative_last_exon cryptocephal,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21312209_21314835;chr2L_21312209_21312283 chr2L_21312209_21318320,chr2L_21312209_21318126 chr2L_21314836_21315347;chr2L_21312284_21312647 chr2L_21318321_21318419 chr2L_21312125_21312208 93.41 95.10 92.06 93.74 94.05 93.72 91.64 92.89 91.40 96.53 92.46 93.94 91.71 90.44 93.19 84.06 92.99 92.20 91.69 92.28 93.36 92.76 95.24 95.25 95.48 95.72 94.36 90.31 92.46 94.12 93.41 93.88 92.93 92.39 91.23 91.28 96.36 94.66 96.54 92.10 94.37 93.08 92.74 95.22 94.32 93.06 95.66 90.41 93.24 96.81 94.38 93.42 95.61 96.87 93.94 95.62 95.44 92.80 K alternative_acceptor Bsg25D,I_chr2L_5277665_5277933 chr2L - chr2L_5277181_5277933 chr2L_5277665_5277933 chr2L_5277934_5278033;chr2L_5276936_5277180 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA N jcn_only_AA CG8790 chr3R + chr3R_9190952_9191016;chr3R_9190952_9193460;chr3R_9190952_9193285 chr3R_9190952_9193295 chr3R_9190661_9190951 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 1.22 0.68 0.00 0.00 0.65 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 K intron_retention pnr,RI_chr3R_11852561_11855192 chr3R + chr3R_11865269_11865336 chr3R_11865268_11865269;chr3R_11865336_11865337 chr3R_11864992_11865268;chr3R_11865337_11866597 1.41 1.03 2.61 1.50 1.52 1.09 1.96 1.59 1.99 0.83 1.63 1.45 0.96 0.93 2.23 2.25 2.18 1.75 2.12 1.24 1.95 0.77 0.97 0.98 0.92 0.00 4.05 5.71 3.13 0.77 3.41 1.30 0.62 1.19 1.33 1.41 0.93 0.85 1.15 0.84 1.44 1.04 2.50 0.76 0.96 1.67 1.49 0.65 1.65 1.44 2.06 0.59 1.24 1.49 1.45 1.16 1.64 0.66 K intron_retention sd,noncoding_23930,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15706564_15707633 chrX_15706563_15706564;chrX_15707633_15707634 chrX_15706468_15706563;chrX_15707634_15707635 72.08 NA NA 91.67 41.67 63.64 84.62 88.89 60.87 NA 61.54 70.59 80.00 80.00 NA 86.67 80.00 NA 75.00 66.67 NA 87.50 53.33 NA 50.00 NA 71.43 50.00 88.89 95.00 87.50 NA 71.43 86.67 70.00 94.44 63.64 NA 70.00 88.89 63.64 66.67 50.00 NA NA NA NA 92.31 66.67 NA 90.91 54.55 NA NA 72.73 NA NA 90.00 K alternative_last_exon PGRP-LC,E_chr3L_9335847_9338977 chr3L + chr3L_9338225_9340739 chr3L_9338225_9338708 chr3L_9340740_9341541 chr3L_9338709_9338860 chr3L_9338185_9338224 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 33.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.67 0.00 10.00 14.29 28.57 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 20.00 25.00 14.29 25.00 0.00 20.00 NA 0.00 20.00 20.00 11.11 0.00 0.00 0.00 14.29 0.00 12.50 14.29 8.33 20.00 NA 16.67 NA 20.00 0.00 10.00 10.00 K alternative_donor CG4896,REI_chr2L_1179197_1179859,I_chr2L_1191535_1191648 chr2L + chr2L_1177862_1177947 chr2L_1177869_1177947 chr2L_1177948_1178044;chr2L_1177765_1177861 21.43 NA 14.29 20.00 NA NA NA NA 10.00 NA NA 9.09 NA NA NA 16.67 NA NA NA 27.78 NA 5.26 35.71 NA NA 21.43 63.64 25.00 33.33 25.00 29.03 23.08 NA 11.11 NA 36.36 23.08 25.00 26.09 20.00 26.67 18.75 NA 21.43 7.14 20.83 28.57 19.51 22.73 17.65 18.75 NA NA 14.29 21.43 NA NA 40.00 K alternative_donor CG4159 chr3R - chr3R_16418216_16418282 chr3R_16418216_16418278 chr3R_16417730_16418215;chr3R_16418283_16418358 29.41 23.53 33.33 31.25 NA NA 29.17 37.50 37.50 NA NA 41.18 NA 23.08 NA 28.57 NA NA NA 29.41 NA 27.27 26.32 26.32 NA NA 29.41 NA NA NA 18.75 NA NA 26.67 33.33 NA 31.25 38.46 30.77 NA NA 26.32 NA NA NA 33.33 40.00 NA 18.18 16.00 47.06 25.00 35.29 63.64 NA 26.67 28.57 NA K intron_retention CG5021 chr3L + chr3L_8960617_8960665 chr3L_8960616_8960617;chr3L_8960665_8960666 chr3L_8960382_8960616;chr3L_8960666_8960835 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor vir-1,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,I_chr2L_12421830_12423260 chr2L - chr2L_12421862_12423322;chr2L_12421830_12423322 chr2L_12421902_12423322 chr2L_12423323_12423328;chr2L_12421816_12421829 1.76 1.54 1.95 2.66 4.08 2.26 2.56 3.28 2.07 0.57 2.58 1.08 2.11 1.76 3.15 0.36 2.10 2.32 2.63 1.24 5.14 0.59 0.51 0.95 6.53 3.04 1.81 2.75 1.06 1.17 0.87 1.73 4.11 2.78 1.44 2.41 0.94 1.36 0.73 2.76 2.96 2.71 2.64 0.80 2.19 1.14 0.82 1.10 1.66 0.85 1.78 0.61 0.88 0.72 2.23 0.79 0.44 1.35 N jcn_only_AD e(r) chrX - chrX_8799622_8799801;chrX_8799622_8799982 chrX_8799622_8800141 chrX_8799538_8799621;chrX_8800142_8800333 98.14 98.48 98.67 98.14 98.37 96.69 98.61 97.58 96.07 99.02 100.00 98.56 98.34 98.47 96.88 98.80 96.61 98.69 98.88 97.74 97.20 99.45 97.51 96.79 98.10 96.75 99.49 97.76 100.00 99.29 98.68 97.10 99.26 97.07 99.36 95.50 100.00 98.75 97.52 97.77 100.00 98.64 96.72 98.00 98.88 97.59 98.77 98.04 99.65 95.00 97.86 99.07 97.20 96.39 96.70 98.84 96.25 96.00 K jcn_only_AD CG7656,I_chr3L_15580697_15581083 chr3L - chr3L_15580697_15581154;chr3L_15580697_15581083 chr3L_15580697_15581265 chr3L_15580597_15580696;chr3L_15581266_15581315 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.76 0.00 0.00 1.80 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 K intron_retention rgr,I_chr2R_4488735_4489955 chr2R + chr2R_4488735_4495816 chr2R_4488734_4488735;chr2R_4495816_4495817 chr2R_4488635_4488734;chr2R_4495817_4496026 3.78 2.50 13.33 0.00 7.14 17.39 5.56 20.00 16.33 2.70 8.33 9.80 NA 14.29 9.09 5.56 0.00 20.00 6.67 10.00 3.85 4.07 6.19 0.00 3.12 11.11 1.43 1.98 3.70 4.44 0.00 0.00 3.08 16.00 7.69 2.67 3.17 0.00 2.63 4.48 2.50 6.12 0.00 6.52 1.03 2.11 3.23 4.32 20.93 0.00 1.47 4.35 2.38 0.00 16.67 0.00 0.00 0.00 K jcn_only_AA Neu3 chr3R - chr3R_10496565_10497093 chr3R_10496969_10497093 chr3R_10497094_10497245 0.00 0.00 0.00 0.00 0.00 1.71 0.00 0.00 0.58 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.71 0.00 0.00 1.01 K intron_retention ced-6,I_chr2R_5324717_5324924,I_chr2R_5328640_5328696,I_chr2R_5331785_5332177 chr2R - chr2R_5325238_5329011 chr2R_5325237_5325238;chr2R_5329011_5329012 chr2R_5324931_5325237;chr2R_5329012_5329022 97.30 96.30 96.23 98.33 89.66 96.67 98.53 92.19 95.74 95.24 97.30 93.26 98.31 100.00 86.00 98.81 96.00 95.83 97.73 99.50 100.00 89.02 96.49 90.91 100.00 94.59 95.45 96.88 99.06 98.97 97.62 97.01 97.30 98.44 100.00 100.00 94.23 91.67 100.00 97.40 98.70 95.35 96.30 98.25 98.44 98.84 100.00 99.44 95.29 88.24 95.12 96.77 100.00 100.00 94.83 97.56 100.00 99.40 K intron_retention CG6923 chr3R - chr3R_7574682_7574963 chr3R_7574681_7574682;chr3R_7574963_7574964 chr3R_7574512_7574681;chr3R_7574964_7575027 15.79 10.53 0.00 27.27 NA 20.00 26.09 24.14 17.39 NA NA 19.05 4.76 NA 15.79 14.29 20.00 NA 14.29 16.67 NA NA 5.00 14.29 NA 20.00 16.13 18.75 NA NA NA NA NA 12.50 25.00 25.00 NA NA 11.11 12.00 NA 17.86 NA 12.50 NA 7.14 NA NA 16.67 NA 12.50 NA NA NA 12.50 NA 6.67 NA K intron_retention smaug,I_chr3L_8988666_8990825 chr3L - chr3L_8984258_8984321 chr3L_8984257_8984258;chr3L_8984321_8984322 chr3L_8983643_8984257;chr3L_8984322_8984637 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA NA 93.75 100.00 NA NA 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA NA NA 100.00 100.00 100.00 100.00 90.91 100.00 94.44 NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 K intron_retention mri,RI_chr3L_201061_201173,I_chr3L_212783_212843 chr3L + chr3L_201061_201170 chr3L_201060_201061;chr3L_201170_201171 chr3L_200990_201060;chr3L_201171_201368 8.11 8.93 11.48 32.43 11.48 9.09 8.33 7.69 9.43 3.70 8.11 10.61 8.33 4.17 12.96 8.00 1.82 12.50 4.65 9.59 8.11 11.48 8.64 12.20 3.03 8.51 8.99 11.59 3.57 5.41 13.85 4.17 3.03 8.00 4.76 16.67 3.74 5.71 4.49 3.53 7.14 5.05 11.63 9.38 10.53 7.46 6.85 10.42 13.51 6.00 6.35 6.90 9.52 9.30 8.00 2.90 5.33 5.41 K intron_retention CG6643,I_chr3R_20370792_20375406,snRNA:U6:96Aa chr3R + chr3R_20381685_20381957 chr3R_20381684_20381685;chr3R_20381957_20381958 chr3R_20381190_20381684;chr3R_20381958_20382245 0.00 0.00 0.40 0.00 0.00 0.53 0.00 0.00 0.19 0.00 0.00 0.91 0.00 0.84 0.90 0.61 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.42 0.67 0.45 0.90 0.87 0.00 0.00 0.00 0.00 0.38 0.26 0.75 0.00 0.00 0.00 0.78 0.00 1.19 0.23 0.00 0.00 0.00 0.33 0.00 0.60 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD MB8.chr3R.pasa.66,CG1091,I_chr3R_2910490_2910662,RI_chr3R_2910490_2910686,RI_chr3R_2911041_2911135,RI_chr3R_2946518_2946663 chr3R - chr3R_2910490_2910686;chr3R_2910490_2910662 chr3R_2910490_2910646 chr3R_2910390_2910489;chr3R_2910687_2910762 96.83 96.67 97.18 95.08 92.73 97.26 95.65 95.37 96.64 100.00 96.15 99.09 96.97 93.75 95.59 98.95 98.25 96.83 95.45 96.39 96.55 96.23 98.61 97.00 100.00 100.00 93.48 96.88 97.62 98.77 90.23 96.92 95.87 97.12 98.08 96.23 96.74 98.28 95.29 89.52 98.33 99.24 95.65 98.55 97.85 97.26 98.28 98.29 96.30 90.41 95.45 89.83 96.08 96.49 100.00 95.38 98.55 96.97 K jcn_only_AA CG10038 chr3R - chr3R_8176185_8176265 chr3R_8176188_8176265 chr3R_8176266_8176360;chr3R_8176096_8176184 88.46 NA NA 91.43 NA NA NA 95.24 91.67 NA NA NA NA NA NA 90.00 NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA 88.46 NA 84.00 NA NA NA NA NA NA NA N jcn_only_AD orb2,I_chr3L_8942860_8947477 chr3L - chr3L_8940990_8941982 chr3L_8940990_8941183 chr3L_8940928_8940989;chr3L_8941983_8942380 9.43 0.00 0.00 17.81 0.00 0.00 0.00 11.36 15.00 0.00 0.00 9.43 0.00 0.00 0.00 15.79 0.00 0.00 0.00 11.69 0.00 13.38 5.97 16.15 11.69 0.00 8.50 0.00 9.80 12.07 18.99 0.00 19.44 12.37 15.87 8.94 11.97 13.75 9.09 19.71 12.50 12.90 0.00 13.75 11.27 0.00 0.00 19.28 12.15 11.49 14.89 0.00 12.90 0.00 0.00 15.29 10.75 0.00 K intron_retention CG33144,I_chr2R_6654056_6669824 chr2R - chr2R_6643908_6644034 chr2R_6643907_6643908;chr2R_6644034_6644035 chr2R_6642414_6643907;chr2R_6644035_6645049 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA 2.94 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Atg18,I_chr3L_8182683_8182941 chr3L + chr3L_8180294_8180578;chr3L_8180319_8180578 chr3L_8180503_8180578 chr3L_8180579_8180676;chr3L_8180118_8180293 8.54 12.50 7.23 7.25 9.09 10.14 4.29 10.81 11.11 12.20 5.36 9.70 4.55 10.00 13.08 7.45 6.10 10.45 8.89 8.78 6.82 6.29 7.63 13.89 11.84 6.82 10.00 3.85 10.77 7.22 5.50 10.20 3.68 5.04 12.99 1.82 6.50 6.96 14.81 6.87 2.78 12.29 10.17 3.85 8.54 8.70 13.00 5.38 6.45 8.45 14.42 22.41 15.62 1.47 6.03 11.69 11.50 7.22 K alternative_donor RpS23,I_chr2R_10103208_10103456,RI_chr2R_10103208_10103457,I_chr2R_10103243_10103455,mir-308 chr2R - chr2R_10103208_10103457 chr2R_10103208_10103455 chr2R_10103143_10103207;chr2R_10103458_10103555 99.97 99.97 99.98 99.98 99.97 99.96 99.98 99.98 99.97 99.90 99.97 99.96 99.97 99.97 99.98 99.98 99.94 99.98 99.98 99.96 99.95 99.92 99.98 99.93 99.97 100.00 99.96 99.95 99.98 99.97 99.84 99.97 100.00 99.98 99.97 99.97 99.98 99.95 99.99 99.88 99.97 100.00 99.97 99.98 99.98 99.98 99.91 100.00 99.98 99.92 99.97 100.00 99.92 99.97 99.98 99.99 99.95 99.95 K intron_retention CG32579,RI_chrX_16218635_16218688,I_chrX_16218930_16219009,I_chrX_16218930_16219644 chrX + chrX_16218635_16219644 chrX_16218634_16218635;chrX_16219644_16219645 chrX_16218535_16218634;chrX_16219645_16219703 0.00 0.00 0.00 0.00 0.00 NA 5.88 4.35 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 7.69 2.94 NA 11.11 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 3.85 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.63 NA 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA eIF-1A chr3R + chr3R_14100479_14100547;chr3R_14100479_14100588 chr3R_14100479_14100566 chr3R_14100417_14100478;chr3R_14100589_14100702 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor F_chr3R_19799277_19802225,CG5902,Rab7 chr3R + chr3R_19812933_19812991 chr3R_19812933_19812988 chr3R_19812754_19812932;chr3R_19812992_19814545 89.02 97.78 87.50 86.36 90.24 86.67 86.89 92.86 88.07 96.00 86.84 87.50 94.12 89.19 88.10 90.38 90.24 96.67 81.82 93.27 86.21 89.02 91.14 93.10 84.78 92.86 88.71 91.67 89.29 87.76 89.29 88.24 88.06 86.44 87.50 89.74 88.75 88.46 90.41 88.10 89.13 93.51 80.00 92.98 87.50 85.48 91.30 87.27 89.02 90.91 85.48 93.18 87.50 77.27 89.58 90.00 90.57 90.91 K jcn_only_AA Ppt1,REI_chrX_8583323_8583467 chrX - chrX_8583323_8583467 chrX_8583328_8583467 chrX_8583468_8583567;chrX_8583223_8583322 100.00 100.00 100.00 100.00 98.33 100.00 100.00 98.53 98.28 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 99.09 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.91 100.00 97.50 99.09 100.00 100.00 97.83 100.00 100.00 K cassette Ncc69,I_chr3L_12363433_12363982,I_chr3L_12364701_12364860 chr3L - chr3L_12363433_12364643 chr3L_12363433_12364058;chr3L_12364107_12364643 chr3L_12364059_12364106 chr3L_12363335_12363432;chr3L_12364644_12364700 0.00 0.00 0.00 4.65 0.00 0.00 3.45 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 1.96 0.00 3.12 0.00 1.75 0.00 1.67 1.45 0.00 1.30 0.00 2.13 0.00 0.00 0.00 0.00 1.19 0.00 3.39 3.45 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA I_chr2L_4834257_4835246,CG15626,I_chr2L_4837691_4837844,I_chr2L_4837780_4837844 chr2L - chr2L_4837640_4837844;chr2L_4837780_4837844 chr2L_4837691_4837844 chr2L_4837845_4837944;chr2L_4837602_4837639 3.30 2.44 2.70 2.94 6.25 6.45 8.11 4.08 2.11 8.00 0.00 1.75 4.08 2.78 4.17 0.00 0.00 3.92 2.63 2.91 0.00 12.24 3.28 10.53 NA 0.00 2.70 9.38 0.00 0.00 5.26 3.33 3.57 3.92 0.00 NA 7.02 4.35 4.84 7.69 NA 3.95 3.57 0.00 7.14 0.00 0.00 5.00 2.70 2.94 3.57 8.00 2.33 8.33 0.00 2.78 5.56 0.00 K jcn_only_AD Ect4,I_chr3L_8075556_8086158,I_chr3L_8089973_8090123,I_chr3L_8089977_8091445,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8089973_8090070 chr3L_8089977_8090070 chr3L_8090071_8090087;chr3L_8089959_8089972 60.18 NA NA NA NA NA NA 52.38 58.82 NA NA NA NA NA NA 61.54 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD east,CR_chrX_1912038_1912737 chrX + chrX_1912120_1912737 chrX_1912243_1912737 chrX_1912738_1912837;chrX_1912113_1912119 93.88 100.00 91.89 98.36 93.10 96.43 93.88 97.10 97.30 82.61 97.14 95.59 93.33 95.65 87.10 94.44 96.67 93.55 90.62 93.98 93.33 88.00 93.18 95.00 96.43 97.37 92.73 NA 95.65 96.30 97.96 NA NA 93.22 77.27 91.67 92.31 96.55 90.57 78.38 NA 91.89 88.24 96.43 100.00 100.00 93.10 88.24 91.76 92.59 91.11 94.74 95.65 NA 97.67 NA 100.00 92.86 K cassette g,I_chrX_13628772_13629563 chrX - chrX_13624678_13627117 chrX_13624678_13625581;chrX_13625656_13627117 chrX_13625582_13625655 chrX_13624529_13624677;chrX_13627118_13627257 98.33 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 97.22 98.18 96.77 100.00 100.00 100.00 100.00 91.67 96.88 95.35 87.50 100.00 97.50 91.67 88.46 100.00 100.00 100.00 97.06 98.28 100.00 96.55 97.44 95.83 91.67 96.49 100.00 98.33 97.14 91.67 80.00 100.00 100.00 97.56 97.92 96.30 97.22 100.00 100.00 92.86 97.62 100.00 100.00 100.00 K intron_retention dom,snoRNA:Psi28S-3316a,snoRNA:Psi28S-3316b,snoRNA:Psi18S-841a,I_chr2R_17217595_17218598,I_chr2R_17228865_17228924 chr2R + chr2R_17213153_17214923 chr2R_17213152_17213153;chr2R_17214923_17214924 chr2R_17212897_17213152;chr2R_17214924_17215724 0.00 0.00 0.00 4.11 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention kay,E_chr3R_25616137_25617114 chr3R + chr3R_25615618_25617114 chr3R_25615617_25615618;chr3R_25617114_25617115 chr3R_25615520_25615617;chr3R_25617115_25617214 91.67 83.33 91.67 100.00 NA 88.89 92.59 72.73 96.15 NA 83.33 96.43 75.00 92.86 88.89 100.00 92.31 85.71 80.00 95.45 88.89 75.00 100.00 90.00 NA 90.91 100.00 93.33 91.67 100.00 90.91 NA 100.00 100.00 100.00 90.91 NA NA 100.00 92.31 NA 85.19 90.00 NA NA NA NA 84.62 95.00 NA 91.67 NA NA NA 90.00 NA NA NA K intron_retention CG40045,noncoding_14308,RI_chr3L_24023955_24028531,RI_chr3L_24023958_24028536,I_chr3L_24024771_24028531,I_chr3L_24025959_24028531,I_chr3L_24028601_24028670 chr3L + chr3L_24023958_24028531 chr3L_24023957_24023958;chr3L_24028531_24028532 chr3L_24023858_24023957;chr3L_24028532_24028600 2.48 2.99 1.43 2.37 2.27 2.44 2.79 3.22 3.88 5.36 1.98 1.79 1.51 2.76 2.99 2.20 2.92 3.70 4.19 2.83 2.04 3.26 3.10 2.61 4.76 1.71 2.54 2.94 4.00 5.45 2.96 0.00 4.76 2.29 1.65 4.65 1.67 1.72 0.00 11.79 2.12 2.11 2.48 1.40 2.82 1.00 0.00 3.80 2.16 1.88 2.72 3.64 2.25 0.00 3.14 0.00 1.55 1.27 K intron_retention RpL36 chrX - chrX_522720_522783 chrX_522719_522720;chrX_522783_522784 chrX_522360_522719;chrX_522784_522911 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 K intron_retention vkg,I_chr2L_5027222_5027297,I_chr2L_5027222_5028118 chr2L - chr2L_5027222_5027351 chr2L_5027221_5027222;chr2L_5027351_5027352 chr2L_5027122_5027221;chr2L_5027352_5027389 5.18 3.28 5.26 9.79 2.76 5.13 9.64 11.20 3.78 4.44 4.49 11.72 8.42 6.29 12.18 5.41 4.00 7.83 10.99 5.56 5.18 3.03 3.05 5.06 6.82 13.16 5.22 3.77 3.03 0.00 4.90 5.63 2.56 11.46 7.32 8.82 1.66 2.08 3.65 6.00 6.98 6.96 11.11 0.00 11.54 5.26 4.00 8.40 9.09 0.00 3.53 2.82 4.44 0.00 5.09 6.25 2.15 3.85 K intron_retention CG15544 chr3R + chr3R_26659586_26664016 chr3R_26659585_26659586;chr3R_26664016_26664017 chr3R_26659578_26659585;chr3R_26664017_26665751 0.00 NA 0.00 NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA 5.56 NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA 6.67 NA 0.00 4.76 NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA N cassette I_chr3R_16141663_16144698,CG5077,I_chr3R_16147605_16147670 chr3R + chr3R_16145723_16147197 chr3R_16145723_16145936;chr3R_16146597_16147197 chr3R_16145937_16146596 chr3R_16145491_16145722;chr3R_16147198_16147358 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.16 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CREF_chr3R_5589662_5589762,CG8481 chr3R + chr3R_5594297_5594466;chr3R_5593863_5594466 chr3R_5594185_5594466 chr3R_5594467_5594493;chr3R_5593583_5593862 12.50 25.00 7.69 0.00 NA 0.00 10.00 7.69 13.33 NA 7.69 7.69 0.00 NA 12.50 20.00 NA NA 14.29 9.09 NA 15.79 25.00 11.11 NA NA NA 50.00 14.29 0.00 14.29 18.18 13.33 7.14 NA NA 0.00 33.33 11.11 5.56 0.00 20.00 NA 9.09 14.29 18.18 16.67 10.00 12.50 NA 0.00 33.33 NA NA 16.67 NA 0.00 33.33 K intron_retention Amph,I_chr2R_8498227_8498492 chr2R + chr2R_8481323_8481377 chr2R_8481322_8481323;chr2R_8481377_8481378 chr2R_8481116_8481322;chr2R_8481378_8481573 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 90.00 95.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA NA NA NA NA 88.89 NA 100.00 NA 100.00 100.00 NA NA NA NA NA 90.91 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 93.33 NA NA NA NA NA NA NA NA 100.00 K alternative_donor Spred,I_chr2R_10655876_10656041,I_chr2R_10655876_10656193,I_chr2R_10655876_10656868 chr2R - chr2R_10655876_10656848;chr2R_10655876_10656878;chr2R_10655876_10656782;chr2R_10655876_10656871 chr2R_10655876_10656526 chr2R_10655776_10655875;chr2R_10656879_10656886 10.00 6.67 7.14 14.71 0.00 7.69 18.75 15.38 8.62 0.00 13.33 10.71 18.75 9.09 10.00 11.43 6.25 8.33 18.18 9.09 7.14 16.67 0.00 18.18 16.67 20.00 22.22 14.29 22.22 9.09 9.09 0.00 11.11 12.90 20.00 8.33 5.56 0.00 12.50 12.50 33.33 8.82 15.38 4.76 0.00 14.29 0.00 13.33 11.11 16.67 17.65 7.69 0.00 0.00 9.09 0.00 10.00 12.50 K alternative_donor smi35A,E_chr2L_14222082_14233578,E_chr2L_14222082_14233893,RI_chr2L_14233579_14233647 chr2L - chr2L_14222082_14229531 chr2L_14222082_14229458 chr2L_14222060_14222081;chr2L_14229532_14229536 72.91 NA NA NA NA NA NA 62.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention AP-50,CG7054 chr3R + chr3R_18289009_18289064 chr3R_18289008_18289009;chr3R_18289064_18289065 chr3R_18288570_18289008;chr3R_18289065_18289847 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention eff,I_chr3R_10559606_10563141,REI_chr3R_10560141_10566101,RE_chr3R_10563206_10565464,I_chr3R_10563206_10566728 chr3R - chr3R_10559606_10560108 chr3R_10559605_10559606;chr3R_10560108_10560109 chr3R_10559506_10559605;chr3R_10560109_10560140 0.00 0.00 0.00 0.87 0.00 0.00 1.05 0.85 0.80 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.52 0.00 0.00 0.00 1.06 1.47 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.83 0.88 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.63 1.30 0.00 0.55 K alternative_acceptor CG5854,RI_chr3R_19760655_19760703 chr3R + chr3R_19759783_19759892 chr3R_19759783_19759854 chr3R_19759718_19759782;chr3R_19759893_19760066 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 1.54 0.74 0.00 0.83 0.00 0.00 2.47 1.52 0.00 1.41 0.00 0.00 0.00 0.00 0.78 0.44 0.00 1.03 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.66 0.00 0.00 1.01 0.00 0.00 0.00 0.47 0.47 K intron_retention mrj,RI_chr2R_12093733_12108627,I_chr2R_12108697_12109174 chr2R - chr2R_12093325_12093405 chr2R_12093324_12093325;chr2R_12093405_12093406 chr2R_12093215_12093324;chr2R_12093406_12093584 0.00 1.28 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.74 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor janA,RI_chr3R_25864678_25864966,I_chr3R_25864692_25864783,I_chr3R_25871509_25871807 chr3R - chr3R_25865129_25865198 chr3R_25865129_25865194 chr3R_25864967_25865128;chr3R_25865199_25865238 49.25 53.85 49.23 53.26 46.77 44.00 51.39 44.79 47.33 63.33 44.00 47.57 48.72 49.06 41.86 40.86 46.94 56.90 57.14 45.30 58.00 67.86 50.91 50.00 53.33 44.93 39.06 62.07 45.16 56.25 47.83 47.62 54.29 49.38 57.14 44.00 49.25 44.62 45.71 65.15 40.91 53.04 50.00 51.85 47.06 54.55 38.71 52.00 54.74 48.48 47.73 52.38 58.33 58.82 43.24 52.38 42.41 53.12 K alternative_donor CG1578,RI_chrX_11709573_11709680,I_chrX_11709573_11710263,RI_chrX_11709573_11710335,noncoding_23225,I_chrX_11710380_11710454 chrX - chrX_11709573_11709680;chrX_11709573_11710458;chrX_11709573_11710335;chrX_11709573_11710454 chrX_11709573_11710263 chrX_11709473_11709572;chrX_11710459_11710479 0.00 0.00 14.29 5.88 12.50 0.00 5.56 5.26 6.67 0.00 0.00 5.88 0.00 0.00 9.09 5.88 10.00 0.00 0.00 4.76 11.11 12.50 0.00 0.00 0.00 12.50 10.00 12.50 27.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 10.00 0.00 6.25 0.00 0.00 0.00 8.33 8.70 0.00 0.00 0.00 0.00 0.00 11.11 0.00 0.00 12.50 K intron_retention cora,I_chr2R_15125277_15130573,I_chr2R_15129291_15129988 chr2R + chr2R_15124569_15125656 chr2R_15124568_15124569;chr2R_15125656_15125657 chr2R_15124447_15124568;chr2R_15125657_15125819 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.55 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette step,I_chr2L_21743972_21757163,RI_chr2L_21747333_21756553,CREI_chr2L_21753815_21756553 chr2L - chr2L_21743972_21757163 chr2L_21743972_21756553;chr2L_21756628_21757163 chr2L_21756554_21756627 chr2L_21743872_21743971;chr2L_21757164_21757263 90.70 96.15 96.00 85.11 94.44 95.45 82.76 92.31 88.24 84.00 83.33 97.44 89.29 100.00 88.57 94.59 100.00 83.33 82.14 100.00 85.00 62.50 92.68 93.10 77.27 90.48 85.37 90.00 73.08 96.67 100.00 86.96 87.50 94.59 100.00 91.30 93.10 91.18 89.29 85.71 94.44 95.56 100.00 87.88 75.00 93.94 95.00 87.23 90.70 84.00 90.24 83.33 75.00 94.44 85.71 95.24 91.67 93.94 K jcn_only_AD psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6445882_6449190 chr2R_6446039_6449190 chr2R_6449191_6449459;chr2R_6445413_6445881 92.59 100.00 85.19 92.86 NA NA NA 96.61 91.38 NA 96.15 90.00 90.00 95.83 92.59 97.14 92.31 90.00 91.43 86.57 NA NA 89.19 90.91 NA 89.29 86.67 NA 72.73 84.21 95.45 NA NA 86.05 95.83 100.00 96.67 100.00 NA 92.00 NA 93.48 88.46 96.00 95.45 NA NA 92.59 93.88 NA 95.00 96.43 NA NA 86.21 NA NA 100.00 N jcn_only_AA Rip11,E_chrX_18532733_18533695,RI_chrX_18530353_18530870,RI_chrX_18530742_18530870,RI_chrX_18544139_18544185 chrX - chrX_18530338_18530646 chrX_18530353_18530646 chrX_18530647_18530741;chrX_18530253_18530337 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.61 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG14446 chrX + chrX_6122216_6122276 chrX_6122215_6122216;chrX_6122276_6122277 chrX_6122010_6122215;chrX_6122277_6122436 0.00 NA NA 10.53 NA NA 0.00 0.00 4.55 NA NA 0.00 NA NA NA NA NA 0.00 NA 5.26 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 4.76 NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K mutually_exclusive Atpalpha,I_chr3R_16783890_16785070,I_chr3R_16788018_16789830,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16774552_16787936,chr3R_16788018_16789446 chr3R_16774552_16786447,chr3R_16786564_16789446 chr3R_16787937_16788017 chr3R_16786448_16786563 chr3R_16774539_16774551;chr3R_16789447_16789578 2.76 0.00 0.00 2.74 2.33 6.25 3.57 2.67 2.00 2.86 68.97 2.82 4.55 2.44 1.96 4.48 2.38 5.56 6.25 3.51 16.13 0.00 6.25 4.17 0.00 0.00 9.09 0.00 5.66 4.00 4.44 2.56 2.30 4.17 0.00 0.00 0.00 0.00 0.00 3.55 0.00 2.86 2.78 4.44 3.85 3.92 0.00 3.67 2.20 0.00 7.69 0.00 3.57 NA 1.56 0.00 0.00 7.58 N multi_cassette CG12065,CE_chrX_8469528_8477573 chrX + chrX_8478609_8481290 chrX_8478609_8478875;chrX_8478957_8479842;chrX_8479952_8480018;chrX_8480279_8480584;chrX_8480642_8481290 chrX_8478876_8478956;chrX_8479843_8479951;chrX_8480019_8480278;chrX_8480585_8480641 chrX_8478489_8478608;chrX_8481291_8481558 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 78.38 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Doa,I_chr3R_24715823_24718923,I_chr3R_24747391_24747896 chr3R + chr3R_24746812_24746877 chr3R_24746811_24746812;chr3R_24746877_24746878 chr3R_24746642_24746811;chr3R_24746878_24746991 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.27 0.00 0.00 1.01 0.46 0.00 0.00 0.00 0.41 0.00 0.00 0.45 0.29 0.00 0.00 0.70 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.24 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.42 0.00 0.00 K intron_retention Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CE_chr2R_11826384_11826741,I_chr2R_11826763_11826990,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824089_11825951 chr2R_11824088_11824089;chr2R_11825951_11825952 chr2R_11823989_11824088;chr2R_11825952_11826483 15.69 7.94 10.00 35.29 2.86 0.00 6.52 21.43 24.59 3.95 12.12 31.58 18.18 18.18 15.15 36.00 15.00 10.53 18.18 19.72 10.00 43.59 17.50 9.52 15.69 0.00 12.31 11.59 23.53 13.64 11.43 27.50 19.77 19.51 17.50 15.69 8.51 9.62 13.33 21.43 16.67 13.64 8.70 26.19 16.18 23.33 17.65 22.22 21.54 8.57 21.15 12.90 18.42 20.00 11.43 12.24 12.31 23.53 K intron_retention Zyx102EF,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1078199_1078258 chr4_1078198_1078199;chr4_1078258_1078259 chr4_1078191_1078198;chr4_1078259_1078326 18.18 13.79 17.24 42.37 12.50 22.22 19.61 20.59 23.40 NA 28.57 27.45 11.11 19.23 18.18 24.00 16.67 15.38 12.50 14.81 22.22 NA 32.26 18.52 28.57 29.63 25.71 36.36 NA 0.00 13.04 15.38 NA 26.32 10.53 4.35 NA NA 26.67 12.50 22.73 18.87 12.12 20.83 19.05 13.21 5.17 29.41 20.29 12.50 13.33 6.25 16.28 8.57 12.50 9.52 10.91 18.60 K jcn_only_AA CG11652,I_chr3L_11689925_11689974 chr3L - chr3L_11688679_11689974 chr3L_11689925_11689974 chr3L_11689975_11690074;chr3L_11688579_11688678 0.00 0.00 0.00 0.00 3.23 0.00 2.27 1.49 0.00 3.33 4.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 1.19 NA 4.26 3.03 0.00 0.00 0.00 0.00 NA NA 0.00 2.08 0.00 3.12 0.00 2.94 0.00 2.22 0.00 0.00 2.27 0.00 1.27 0.00 0.00 4.35 0.00 0.00 2.27 0.00 NA 0.00 0.00 NA 3.23 0.00 0.00 0.00 0.00 K jcn_only_AA CG1399,I_chr2R_3574133_3574191 chr2R - chr2R_3565240_3566074 chr2R_3565910_3566074 chr2R_3566075_3566131;chr2R_3564840_3565239 98.61 98.48 98.25 96.74 98.04 96.36 90.91 93.81 100.00 100.00 100.00 100.00 100.00 98.00 100.00 98.46 100.00 97.37 100.00 100.00 97.62 100.00 100.00 97.65 100.00 100.00 98.92 94.55 99.00 100.00 98.15 100.00 96.92 98.61 93.85 96.15 100.00 98.61 100.00 99.39 100.00 97.03 100.00 99.22 100.00 97.89 100.00 98.46 97.92 96.55 98.88 98.21 95.65 97.67 100.00 98.51 98.57 96.08 K intron_retention l(2)k09913 chr2R + chr2R_18955652_18958129 chr2R_18955651_18955652;chr2R_18958129_18958130 chr2R_18955470_18955651;chr2R_18958130_18958411 2.05 0.97 1.39 16.67 3.77 3.39 5.36 5.26 3.55 0.00 11.76 2.73 4.26 2.38 2.86 0.00 0.00 2.13 0.00 2.82 6.82 1.16 1.88 2.05 4.55 0.00 3.03 0.00 0.00 2.50 1.54 1.27 1.85 4.76 0.00 2.36 2.60 3.54 1.35 1.15 2.04 1.40 4.26 1.00 2.58 1.61 1.43 0.00 2.38 2.74 0.94 2.38 0.00 0.80 3.92 1.57 4.11 0.87 K intron_retention RhoGAP92B chr3R + chr3R_15731083_15731352 chr3R_15731082_15731083;chr3R_15731352_15731353 chr3R_15730878_15731082;chr3R_15731353_15731609 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 2.56 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 1.41 1.41 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD CG3191,CG3091,I_chrX_2147635_2147990 chrX - chrX_2145388_2146756 chrX_2145388_2145704 chrX_2145228_2145387;chrX_2146757_2146893 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 57.58 NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 K jcn_only_AA RpL29,I_chr2R_17184688_17191389 chr2R + chr2R_17181667_17181762 chr2R_17181667_17181735 chr2R_17181559_17181666;chr2R_17181763_17181909 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.98 100.00 100.00 99.99 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.99 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG12118 chrX - chrX_9089255_9089583 chrX_9089254_9089255;chrX_9089583_9089584 chrX_9088775_9089254;chrX_9089584_9090152 21.43 15.79 22.22 22.22 NA NA 25.00 11.76 18.18 NA NA 14.29 NA NA 7.69 NA NA NA NA 26.32 NA 12.50 16.67 22.22 NA 10.00 17.65 NA 23.08 NA 41.67 NA NA 23.08 41.67 NA 19.05 15.00 15.38 25.00 NA 20.00 NA NA NA 25.00 22.22 NA 29.41 33.33 22.73 NA 33.33 17.65 11.11 21.43 20.00 NA K intron_retention CG1599,RI_chr2R_5728855_5728907,I_chr2R_5728977_5729044,I_chr2R_5729744_5729805 chr2R - chr2R_5728981_5729044 chr2R_5728980_5728981;chr2R_5729044_5729045 chr2R_5728914_5728980;chr2R_5729045_5729112 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 7.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 K intron_retention CG7546 chr3L + chr3L_7508682_7508740 chr3L_7508681_7508682;chr3L_7508740_7508741 chr3L_7508157_7508681;chr3L_7508741_7508877 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 3.51 2.33 1.27 2.40 0.00 2.97 0.00 0.00 0.00 0.31 1.49 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.99 1.37 0.98 0.00 0.00 0.00 0.00 0.00 1.16 K intron_retention Aldh-III,I_chr2R_3356541_3356614,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3356120_3356864 chr2R_3356119_3356120;chr2R_3356864_3356865 chr2R_3356051_3356119;chr2R_3356865_3357018 96.15 96.15 95.00 100.00 100.00 100.00 96.88 92.59 93.75 91.67 100.00 100.00 100.00 100.00 100.00 100.00 95.24 93.33 96.55 95.24 95.45 86.67 100.00 100.00 94.12 88.24 96.43 100.00 NA 100.00 87.88 100.00 NA 100.00 90.91 100.00 85.71 85.00 96.30 95.65 NA 98.00 100.00 95.24 NA 94.74 93.75 100.00 100.00 100.00 95.65 93.75 90.00 94.12 100.00 95.45 85.71 87.50 K intron_retention CG8839,I_chr2R_8229288_8229488,I_chr2R_8229288_8231538 chr2R - chr2R_8229288_8231966 chr2R_8229287_8229288;chr2R_8231966_8231967 chr2R_8229188_8229287;chr2R_8231967_8232118 4.55 NA NA NA NA NA 0.00 0.00 8.33 NA NA 17.65 7.14 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 9.52 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA 10.53 8.33 NA NA NA NA NA NA NA NA 4.55 K cassette CG17471,RI_chr4_1213397_1214333,RI_chr4_1213397_1216053,RI_chr4_1214248_1214333,I_chr4_1214293_1214333,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1213397_1216053 chr4_1213397_1214333;chr4_1214486_1216053 chr4_1214334_1214485 chr4_1213332_1213396;chr4_1216054_1216153 96.36 96.55 96.36 73.91 100.00 96.97 94.55 96.15 97.44 83.33 100.00 93.33 73.68 91.67 94.59 98.48 97.37 100.00 98.00 90.24 100.00 83.33 96.67 96.97 95.45 93.55 100.00 100.00 84.62 95.83 98.33 93.94 93.02 94.74 100.00 95.45 100.00 100.00 96.55 96.43 80.65 94.94 96.88 97.14 74.07 96.23 90.91 88.64 93.48 97.22 97.67 96.55 94.74 100.00 96.36 97.44 97.44 85.48 K intron_retention Spx chrX + chrX_6150136_6150193 chrX_6150135_6150136;chrX_6150193_6150194 chrX_6150052_6150135;chrX_6150194_6151659 1.29 1.49 0.00 1.50 4.60 0.00 2.15 0.00 1.63 0.00 0.00 0.39 0.00 0.00 2.80 1.02 0.00 1.82 0.00 1.29 0.00 11.83 2.99 2.45 3.74 1.54 3.31 3.73 15.65 0.00 0.00 1.19 1.17 1.04 1.83 3.12 3.51 1.75 3.43 2.39 1.57 0.81 1.85 4.69 1.11 0.48 0.68 0.74 0.96 1.59 1.48 1.94 0.00 0.00 1.61 0.50 0.51 0.00 K intron_retention I_chr3R_16141663_16144698,CG5077,I_chr3R_16144997_16145285,I_chr3R_16145228_16145285,I_chr3R_16147605_16147670 chr3R + chr3R_16144749_16145285 chr3R_16144748_16144749;chr3R_16145285_16145286 chr3R_16144727_16144748;chr3R_16145286_16145385 5.94 1.60 8.06 3.12 3.39 3.08 8.54 6.67 2.88 10.53 2.50 5.22 6.00 4.35 4.82 6.48 5.88 1.37 5.06 12.50 2.90 11.11 13.64 23.08 9.26 4.00 32.35 23.08 12.12 5.26 1.98 NA 4.88 5.88 18.52 23.33 12.73 0.77 14.29 6.15 9.09 3.70 3.28 6.40 0.00 17.39 15.38 5.88 4.93 12.82 11.11 7.78 8.57 0.00 1.19 4.12 15.15 4.17 K intron_retention eIF-1A,I_chr3R_14106104_14107415,I_chr3R_14106955_14107415 chr3R + chr3R_14100864_14107415 chr3R_14100863_14100864;chr3R_14107415_14107416 chr3R_14100759_14100863;chr3R_14107416_14107515 1.20 1.20 1.29 3.03 1.55 2.15 2.02 1.58 1.60 0.00 1.48 1.37 1.58 1.47 2.29 1.74 2.40 2.08 1.55 1.31 1.23 0.00 0.69 0.00 0.62 1.50 1.30 2.17 0.39 0.00 2.20 0.30 0.91 1.41 1.49 0.00 0.56 1.06 0.82 1.20 0.00 1.50 1.57 0.45 0.00 0.00 0.00 0.56 1.23 0.74 0.75 0.83 0.00 0.26 1.21 0.27 0.00 0.00 N intron_retention CG1622,REI_chrX_13191277_13191339,I_chrX_13191916_13192167,I_chrX_13192409_13192738,EI_chrX_13192857_13192928 chrX + chrX_13191916_13192806 chrX_13191915_13191916;chrX_13192806_13192807 chrX_13191816_13191915;chrX_13192807_13192838 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 82.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG15093 chr2R - chr2R_14664332_14664398 chr2R_14664331_14664332;chr2R_14664398_14664399 chr2R_14664047_14664331;chr2R_14664399_14664462 15.38 17.50 12.50 8.93 15.62 15.38 10.87 15.52 12.09 22.73 21.43 15.79 15.00 15.15 17.07 6.98 15.15 16.67 12.50 22.89 18.52 13.79 11.43 13.64 15.15 14.81 15.38 11.76 17.50 21.43 20.41 20.69 22.73 15.38 28.00 13.79 9.20 12.77 13.64 11.00 33.33 13.89 25.00 4.12 26.67 20.37 25.81 20.00 11.39 14.29 18.18 9.09 22.50 17.95 17.65 18.00 14.29 20.59 K intron_retention Pitslre,I_chr3L_20764965_20765781,I_chr3L_20764965_20766192,I_chr3L_20764965_20766212,I_chr3L_20766064_20766192,I_chr3L_20766064_20766215,RI_chr3L_20766064_20766893,I_chr3L_20766311_20766664,I_chr3L_20766311_20766893,I_chr3L_20766773_20766893 chr3L + chr3L_20764965_20766893 chr3L_20764964_20764965;chr3L_20766893_20766894 chr3L_20764896_20764964;chr3L_20766894_20766993 28.57 15.00 38.46 35.71 NA NA 42.86 42.86 33.33 19.05 NA 41.67 NA 46.15 NA 31.25 60.00 41.67 60.00 41.38 NA 63.89 34.21 18.92 25.00 NA 30.00 15.69 39.39 20.00 NA 28.57 29.03 29.41 18.18 17.39 14.29 18.42 28.57 26.53 23.08 33.33 NA 36.00 19.05 28.57 28.00 19.35 30.77 23.08 25.00 26.32 22.73 20.00 50.00 25.93 30.00 NA K jcn_only_AA srp,I_chr3R_11826508_11826910 chr3R + chr3R_11828046_11828592 chr3R_11828046_11828128 chr3R_11827892_11828045;chr3R_11828593_11829749 100.00 100.00 100.00 99.55 99.48 99.54 99.40 100.00 100.00 100.00 98.98 99.74 100.00 100.00 98.91 100.00 99.50 99.56 100.00 99.82 99.53 100.00 99.68 99.25 100.00 99.06 98.74 99.29 99.40 100.00 99.54 100.00 99.58 99.74 100.00 100.00 100.00 100.00 99.73 99.74 100.00 99.42 100.00 100.00 100.00 100.00 100.00 99.58 100.00 100.00 99.64 100.00 100.00 99.07 100.00 99.39 100.00 100.00 K jcn_only_AD I_chr2R_20461194_20461274,Start1,I_chr2R_20463661_20463716 chr2R + chr2R_20462257_20462481 chr2R_20462424_20462481 chr2R_20462482_20462610;chr2R_20462123_20462256 100.00 NA 95.45 95.92 NA NA 100.00 100.00 96.30 NA NA 93.94 NA 100.00 NA 100.00 NA NA 100.00 100.00 NA 100.00 97.14 NA NA NA 95.45 NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA 100.00 NA NA NA 100.00 92.31 NA 100.00 NA 96.43 NA NA NA 100.00 NA NA NA N multi_cassette Slip1,RI_chr4_684967_689045,I_chr4_685717_686576,RI_chr4_685717_689045,RI_chr4_687548_689045 chr4 + chr4_684967_689045 chr4_684967_685613;chr4_685932_686085;chr4_686263_686576;chr4_687559_689045 chr4_685614_685931;chr4_686086_686262;chr4_686577_687558 chr4_684914_684966;chr4_689046_689145 100.00 66.67 100.00 71.43 100.00 66.67 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 88.89 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 75.00 100.00 85.71 85.71 100.00 100.00 100.00 100.00 100.00 100.00 80.00 83.33 100.00 66.67 66.67 83.33 100.00 100.00 85.71 50.00 100.00 66.67 100.00 100.00 100.00 100.00 66.67 100.00 K jcn_only_AA sba chr3R - chr3R_19747432_19748617 chr3R_19747503_19748617 chr3R_19748618_19748681;chr3R_19747240_19747431 82.61 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 82.61 NA NA NA NA 86.36 NA NA NA 79.17 NA 85.00 NA NA NA NA NA 70.59 NA NA NA NA NA NA NA NA NA NA K jcn_only_AD nrv2,I_chr2L_6791842_6794492,I_chr2L_6793397_6794492,I_chr2L_6793405_6793916,I_chr2L_6793405_6794499,I_chr2L_6793684_6794492 chr2L - chr2L_6793405_6794328;chr2L_6793405_6794492;chr2L_6793405_6794316 chr2L_6793405_6794551 chr2L_6793305_6793404;chr2L_6794552_6794592 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2362674;chr2L_2361586_2362869 chr2L_2361586_2362590 chr2L_2361486_2361585;chr2L_2362870_2362919 12.82 NA NA 21.74 NA NA NA 20.83 12.82 NA NA 7.14 NA NA NA 16.67 NA NA NA 9.09 NA NA 8.00 13.64 NA NA NA NA NA NA 15.00 NA NA 4.35 NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor lig,CI_chr2R_3962006_3962916,I_chr2R_3962357_3962977,RI_chr2R_3962875_3962977 chr2R + chr2R_3961577_3962977;chr2R_3961910_3962977 chr2R_3962006_3962977 chr2R_3962978_3963016;chr2R_3961479_3961576 97.27 95.77 98.24 96.25 94.83 96.74 98.31 98.45 96.12 94.90 97.52 94.98 96.79 96.43 96.64 99.47 98.95 98.97 98.96 99.48 95.81 96.65 97.05 96.03 96.39 98.10 93.99 77.08 90.26 96.14 98.98 95.79 98.83 97.64 98.66 95.11 97.27 96.88 98.05 96.43 96.83 98.19 98.80 98.10 96.37 97.98 98.93 97.09 98.12 99.05 97.87 98.57 96.75 98.42 97.49 97.01 97.34 97.95 K intron_retention Cyp310a1 chr2L - chr2L_18652398_18652456 chr2L_18652397_18652398;chr2L_18652456_18652457 chr2L_18652354_18652397;chr2L_18652457_18653176 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_donor MAPk-Ak2,RI_chrX_5655618_5656137,I_chrX_5656715_5657974 chrX - chrX_5654854_5655201 chrX_5654854_5654932 chrX_5653941_5654853;chrX_5655202_5655617 0.27 0.00 0.47 0.34 0.00 0.00 0.35 0.75 0.38 1.22 0.00 0.51 0.63 0.58 0.45 0.46 0.65 0.00 0.56 0.17 0.40 0.45 0.54 0.30 0.51 0.00 0.67 0.00 0.24 0.23 0.43 0.00 0.00 0.72 0.47 0.00 0.00 0.00 0.00 0.23 0.00 0.24 0.00 0.00 0.22 0.26 0.00 0.23 0.82 0.37 0.38 0.48 0.00 0.52 0.00 0.76 0.27 0.17 K intron_retention CG8468 chr2R + chr2R_10107616_10108112 chr2R_10107615_10107616;chr2R_10108112_10108113 chr2R_10107582_10107615;chr2R_10108113_10108270 94.44 88.89 95.45 97.14 89.29 93.94 90.62 93.44 92.94 91.67 92.45 97.56 93.88 95.65 82.93 90.67 96.97 97.62 95.16 95.00 97.14 83.33 97.14 100.00 96.43 92.00 96.67 94.44 100.00 100.00 87.76 94.44 97.50 92.65 97.30 92.31 96.30 89.47 96.15 92.98 96.43 91.03 100.00 94.44 84.62 97.06 87.88 94.34 89.29 94.44 96.55 91.67 95.45 93.75 96.00 95.24 100.00 96.97 K alternative_donor slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,RI_chr2R_20289332_20289739,I_chr2R_20289332_20289846,I_chr2R_20289332_20290093 chr2R - chr2R_20289332_20290083;chr2R_20289332_20289739;chr2R_20289332_20290093 chr2R_20289332_20289846 chr2R_20289232_20289331;chr2R_20290094_20290193 2.44 6.25 5.26 0.00 7.14 6.67 5.26 9.30 7.27 0.00 6.25 4.44 0.00 9.09 8.70 2.13 4.00 5.00 8.33 0.00 0.00 13.04 0.00 5.88 6.67 0.00 8.00 5.26 0.00 0.00 0.00 12.50 0.00 2.44 0.00 4.55 0.00 0.00 0.00 2.94 0.00 2.44 0.00 9.52 0.00 0.00 0.00 0.00 4.88 0.00 4.00 5.26 0.00 0.00 4.00 0.00 0.00 0.00 K alternative_donor Rip11,E_chrX_18532733_18533695,RI_chrX_18530353_18530870,RI_chrX_18530742_18530870,RI_chrX_18544139_18544185 chrX - chrX_18530353_18530870 chrX_18530353_18530646 chrX_18530253_18530352;chrX_18530871_18530906 98.86 99.01 99.71 98.52 99.30 97.47 98.07 99.60 98.87 99.06 99.57 97.50 98.08 99.60 98.88 99.78 95.60 99.63 99.19 98.06 99.57 97.91 99.09 98.59 98.40 98.21 97.72 98.31 97.86 99.25 98.98 98.43 98.81 99.18 98.51 98.86 99.23 98.56 98.76 99.32 99.37 98.57 99.48 98.76 98.22 98.96 98.21 99.08 98.79 99.37 98.85 98.60 99.67 98.18 98.95 98.84 99.62 99.58 K intron_retention CG1764 chrX - chrX_13189130_13189190 chrX_13189129_13189130;chrX_13189190_13189191 chrX_13188502_13189129;chrX_13189191_13189415 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG34394,noncoding_691,I_chr2L_3365674_3365965,RI_chr2L_3365677_3365965,I_chr2L_3365701_3365757 chr2L - chr2L_3364941_3365426 chr2L_3364940_3364941;chr2L_3365426_3365427 chr2L_3364744_3364940;chr2L_3365427_3365673 0.00 0.00 2.94 6.25 0.00 0.00 7.55 2.82 2.56 2.44 3.85 4.62 5.00 0.00 0.00 5.17 6.90 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 5.00 0.00 0.00 0.00 0.00 5.66 0.00 0.00 6.45 0.00 2.27 0.00 NA 5.00 0.00 0.00 0.00 0.00 0.00 0.00 4.88 0.00 0.00 0.00 0.00 NA 2.44 0.00 NA 0.00 K alternative_acceptor AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9003728_9004854 chrX_9003728_9004650 chrX_9003721_9003727;chrX_9004855_9004862 50.00 30.00 30.00 40.00 NA 57.14 35.29 33.33 29.17 71.43 NA 23.33 40.00 20.00 33.33 23.08 NA NA 40.00 35.00 NA 77.78 31.58 60.00 88.89 38.46 57.14 NA 71.43 85.71 21.05 63.64 89.29 38.10 90.00 80.00 41.67 NA 80.00 66.67 77.78 38.10 22.22 58.33 55.56 80.00 50.00 67.86 33.33 66.67 50.00 33.33 NA NA 23.81 55.56 NA 76.92 K intron_retention G-salpha60A chr2R + chr2R_19833785_19833969 chr2R_19833784_19833785;chr2R_19833969_19833970 chr2R_19833660_19833784;chr2R_19833970_19834043 0.00 4.55 0.00 0.00 0.00 0.00 0.78 0.95 0.00 0.00 0.00 4.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 2.44 5.00 0.00 0.00 5.00 0.00 2.13 4.35 0.00 0.00 2.35 0.00 0.00 2.44 0.00 0.00 0.00 2.22 0.00 0.94 2.33 1.52 2.78 2.74 1.47 0.00 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.63 K alternative_donor CG33129,I_chr2L_10966410_10967142,noncoding_2515,I_chr2L_10966622_10967108 chr2L - chr2L_10966622_10968083;chr2L_10966622_10968133;chr2L_10966622_10967855 chr2L_10966622_10968104 chr2L_10966522_10966621;chr2L_10968134_10968152 3.23 6.25 4.55 2.33 0.00 8.00 2.50 2.50 4.58 0.00 0.00 1.16 5.13 0.00 3.23 2.50 4.88 2.17 3.28 3.25 2.94 6.25 0.00 7.69 NA 3.23 0.00 NA 0.00 NA 2.22 0.00 5.26 4.65 NA 8.33 9.09 NA NA 0.00 11.11 0.93 5.13 NA 0.00 10.53 NA 0.00 3.45 NA 25.00 0.00 NA NA 3.85 NA 6.67 1.67 K multi_cassette dlg1,I_chrX_11290137_11290410,I_chrX_11298230_11299306 chrX + chrX_11290137_11299306 chrX_11290137_11291857;chrX_11291946_11292002;chrX_11292217_11292278;chrX_11292693_11292752;chrX_11292856_11294820;chrX_11294866_11299306 chrX_11291858_11291945;chrX_11292003_11292216;chrX_11292279_11292692;chrX_11292753_11292855;chrX_11294821_11294865 chrX_11290037_11290136;chrX_11299307_11299406 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N intron_retention Mipp2,raptor chrX - chrX_5978642_5978823 chrX_5978641_5978642;chrX_5978823_5978824 chrX_5978256_5978641;chrX_5978824_5982246 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.04 K alternative_donor rdx,I_chr3R_9796825_9822742,I_chr3R_9849617_9851443 chr3R - chr3R_9849617_9851443;chr3R_9849617_9851567 chr3R_9849617_9851560 chr3R_9849583_9849616;chr3R_9851568_9851588 12.18 NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA K intron_retention EI_chr3R_4647896_4648190,CG8379 chr3R + chr3R_4650612_4650673 chr3R_4650611_4650612;chr3R_4650673_4650674 chr3R_4650410_4650611;chr3R_4650674_4651130 0.00 0.00 NA 6.45 0.00 0.00 0.00 0.00 2.17 NA 0.00 6.12 NA 0.00 6.67 4.76 NA 0.00 0.00 0.00 NA 0.00 0.00 2.56 11.54 6.25 0.00 6.67 0.00 3.12 12.50 5.56 5.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 6.67 6.25 0.00 2.86 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette CG40263,F_chr2RHet_1265687_1293040,F_chr2RHet_1298459_1298703,F_chr2RHet_1298459_1311408,F_chr2RHet_1298885_1299622,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1265687_1324445 chr2RHet_1265687_1286305;chr2RHet_1286572_1292103;chr2RHet_1292187_1293055;chr2RHet_1293175_1324445 chr2RHet_1286306_1286571;chr2RHet_1292104_1292186;chr2RHet_1293056_1293174 chr2RHet_1265587_1265686;chr2RHet_1324446_1324530 30.77 35.71 30.77 22.22 50.00 26.67 25.00 26.09 37.50 NA NA 28.57 33.33 30.00 30.00 28.00 42.86 33.33 16.67 80.95 NA NA 36.36 37.50 0.00 14.29 50.00 NA NA 66.67 53.33 NA 16.67 29.17 14.29 NA 50.00 33.33 40.00 30.00 0.00 42.31 41.67 36.36 0.00 14.29 42.86 NA 23.81 0.00 40.00 42.86 17.65 40.00 44.44 30.77 29.41 0.00 K jcn_only_AD CG17883,I_chr2R_560147_560511,I_chr2R_560547_560618 chr2R + chr2R_560568_560618;chr2R_560547_560618;chr2R_560147_560618 chr2R_560565_560618 chr2R_560619_560642;chr2R_560047_560146 17.79 13.33 31.25 NA 16.00 21.43 17.39 28.79 16.67 NA 35.71 15.69 23.81 29.63 20.00 30.77 22.22 15.38 18.42 27.06 15.00 16.67 9.38 21.43 18.18 NA 15.00 23.81 NA 10.00 15.38 10.00 17.39 18.92 16.67 NA NA NA 8.00 21.95 NA 8.00 19.44 22.73 14.29 37.50 15.62 NA 17.39 19.23 26.92 16.00 16.13 23.33 26.47 15.38 14.29 21.28 K multi_cassette CG13743,I_chr2R_4938297_4938347 chr2R - chr2R_4935532_4937384 chr2R_4935532_4935680;chr2R_4935843_4935971;chr2R_4936043_4937384 chr2R_4935681_4935842;chr2R_4935972_4936042 chr2R_4935419_4935531;chr2R_4937385_4937566 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N intron_retention Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629613_2629913 chr3L_2629612_2629613;chr3L_2629913_2629914 chr3L_2629141_2629612;chr3L_2629914_2629921 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 91.43 NA 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 K alternative_acceptor CG4096,I_chrX_5601534_5602019 chrX + chrX_5601534_5601593 chrX_5601534_5601589 chrX_5601528_5601533;chrX_5601594_5601737 69.23 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA 75.00 88.89 NA NA NA NA 66.67 NA NA NA NA 69.23 NA NA NA NA NA NA NA NA N jcn_only_AD Inos,I_chr2R_3344353_3345211,noncoding_4874 chr2R - chr2R_3344353_3346113;chr2R_3344353_3345211;chr2R_3344353_3344799 chr2R_3344353_3346212 chr2R_3344253_3344352;chr2R_3346213_3346215 0.48 0.54 0.00 0.53 0.00 0.00 0.78 0.00 0.67 0.00 0.97 1.18 0.00 0.00 1.00 1.39 0.00 1.06 0.00 0.75 0.90 3.53 0.44 0.63 0.00 0.00 0.00 0.63 1.38 1.07 0.67 0.84 3.07 0.55 0.00 0.00 0.00 0.42 0.48 0.90 0.00 0.45 1.47 0.00 0.59 0.82 0.00 0.00 0.73 0.00 0.55 0.00 0.00 0.62 0.83 0.46 0.00 0.00 K intron_retention RI_chrX_1796525_1796585,mip130,Rbcn-3B,I_chrX_1820956_1821011 chrX + chrX_1802389_1811009 chrX_1802388_1802389;chrX_1811009_1811010 chrX_1802383_1802388;chrX_1811010_1813658 3.73 7.41 6.67 29.17 NA 6.25 0.00 0.00 2.04 0.00 NA 3.33 NA NA NA 0.00 NA 25.00 NA 0.00 NA 13.79 4.17 0.00 0.00 NA 6.25 21.05 10.00 5.71 11.11 13.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.41 NA 5.71 NA 0.00 NA 13.79 3.45 12.50 7.41 4.00 2.00 4.76 0.00 0.00 NA 9.09 0.00 15.38 K jcn_only_AD CG32016,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_978516_978914;chr4_978516_978631 chr4_978516_978612 chr4_978478_978515;chr4_978915_978920 0.00 NA 2.70 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K jcn_only_AD CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27044867;chr3R_27044771_27045188;chr3R_27044771_27045132;chr3R_27044771_27045027;chr3R_27044771_27045110;chr3R_27044771_27044831;chr3R_27044771_27044990;chr3R_27044771_27044895 chr3R_27044771_27045257 chr3R_27044671_27044770;chr3R_27045258_27045273 94.97 96.20 97.21 96.83 98.96 98.20 94.30 97.95 97.07 86.11 97.08 97.08 95.23 97.23 97.68 94.97 96.83 97.16 97.32 96.59 96.12 93.80 66.00 65.45 70.83 96.27 60.00 84.52 90.64 89.12 97.92 96.60 92.64 98.14 86.08 87.06 68.42 63.33 70.97 94.59 90.49 97.76 97.40 87.34 97.30 92.63 68.18 95.04 97.67 61.70 73.53 64.58 94.39 59.38 97.07 71.43 70.53 98.22 N alternative_acceptor CG14253 chr3R + chr3R_22807474_22809684 chr3R_22807474_22807525 chr3R_22807374_22807473;chr3R_22809685_22809939 0.42 0.48 0.42 0.44 0.58 0.56 0.43 0.34 0.42 0.00 0.46 0.36 0.41 0.33 0.88 0.25 0.47 1.64 0.72 0.34 0.40 0.00 0.42 0.69 0.00 0.00 0.76 2.38 0.00 0.76 0.43 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.72 0.39 0.00 0.44 0.50 0.00 0.00 0.38 0.67 0.48 0.56 0.88 0.41 1.11 0.00 0.00 0.45 0.65 0.50 0.39 K cassette CG6838,I_chr3L_22709306_22709668 chr3L - chr3L_22709303_22709668;chr3L_22709306_22709668 chr3L_22709303_22709397,chr3L_22709306_22709397;chr3L_22709515_22709668 chr3L_22709398_22709514 chr3L_22709206_22709302;chr3L_22709669_22709768 96.58 94.12 95.95 88.30 98.04 93.44 93.75 98.84 96.75 94.03 88.00 99.03 97.92 95.92 94.52 100.00 97.96 98.18 98.25 97.67 94.23 89.66 92.78 98.75 93.55 83.93 97.18 94.74 92.63 90.28 93.65 98.18 96.97 95.35 98.15 100.00 94.96 94.74 97.25 96.18 96.43 96.58 97.96 98.81 97.44 98.84 100.00 96.81 96.33 96.34 96.00 95.56 98.48 98.04 97.14 95.59 96.81 99.07 K intron_retention CG3308,I_chr3R_17099005_17099062 chr3R - chr3R_17098159_17098208 chr3R_17098158_17098159;chr3R_17098208_17098209 chr3R_17097877_17098158;chr3R_17098209_17098557 0.00 0.00 3.70 1.18 3.70 2.56 2.94 1.23 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 2.04 4.20 0.00 1.98 0.00 0.00 0.00 0.00 3.61 6.25 0.00 0.00 1.54 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 1.65 0.00 0.00 0.00 3.03 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor E_chr4_592469_594231,Ephrin,I_chr4_595055_597604,RI_chr4_596272_596341 chr4 + chr4_592737_594238;chr4_592646_594238;chr4_592490_594238;chr4_592593_594238;chr4_592410_594238;chr4_592798_594238 chr4_592469_594238 chr4_594239_594331;chr4_592404_592409 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention prel chr2R + chr2R_5311772_5311833 chr2R_5311771_5311772;chr2R_5311833_5311834 chr2R_5311616_5311771;chr2R_5311834_5311930 21.31 22.03 18.03 27.16 34.62 24.56 32.35 23.81 25.81 19.44 33.33 21.05 25.00 21.74 28.17 15.12 26.47 20.83 22.41 22.50 27.66 6.85 20.27 18.75 57.14 38.33 45.90 38.18 28.12 16.95 16.67 12.68 13.21 26.09 22.81 53.85 21.15 19.61 21.31 13.91 42.03 18.52 23.40 18.33 8.57 23.33 15.25 14.81 20.00 22.45 20.27 35.90 15.09 18.52 13.56 18.03 16.07 14.88 K intron_retention CG1542 chr3R + chr3R_27039478_27039535 chr3R_27039477_27039478;chr3R_27039535_27039536 chr3R_27039394_27039477;chr3R_27039536_27040423 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.61 2.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Aats-glupro chr3R - chr3R_19783786_19783964 chr3R_19783785_19783786;chr3R_19783964_19783965 chr3R_19783625_19783785;chr3R_19783965_19784093 0.00 3.03 0.00 2.22 0.00 0.00 1.14 2.11 0.00 2.04 0.00 2.48 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.10 0.75 1.37 3.85 0.00 0.00 1.94 2.00 0.00 1.96 9.09 0.00 0.00 3.85 3.23 1.89 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 3.33 1.64 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD Tpi chr3R - chr3R_25959817_25959972;chr3R_25959817_25959887 chr3R_25959817_25960000 chr3R_25959232_25959816;chr3R_25960001_25960005 1.58 0.69 2.67 2.94 0.59 0.68 1.97 2.52 2.09 4.92 2.17 1.01 1.47 3.25 0.54 1.19 1.22 0.00 0.00 0.81 1.69 2.79 1.92 0.00 NA 1.20 0.00 2.75 4.85 2.70 2.84 3.60 9.82 1.58 1.19 0.00 0.00 0.00 1.59 4.72 1.19 1.36 0.00 2.60 5.21 4.94 0.00 9.48 1.91 1.28 1.56 0.00 3.61 0.92 1.75 1.52 5.00 11.54 K alternative_last_exon MED1 chr3L - chr3L_21623009_21624032,chr3L_21623014_21624032 chr3L_21623977_21624032 chr3L_21621384_21623008 chr3L_21623908_21623976 chr3L_21624033_21625939 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Dscam,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3251271_3255892;chr2R_3254472_3255892;chr2R_3253610_3255892;chr2R_3250700_3255892;chr2R_3252685_3255892;chr2R_3251854_3255892;chr2R_3252399_3255892;chr2R_3254133_3255892;chr2R_3252123_3255892;chr2R_3252988_3255892 chr2R_3250996_3255892 chr2R_3255893_3255920 12.86 15.15 12.82 19.05 12.50 9.52 18.52 4.88 12.86 NA NA 16.88 NA 16.67 13.95 6.67 14.29 NA 13.64 6.67 9.38 16.00 11.54 12.82 10.53 6.67 22.45 41.67 11.63 13.95 11.11 NA 20.00 8.70 2.56 3.85 13.64 22.58 16.92 14.93 NA 3.92 10.00 15.38 NA 13.04 3.70 11.76 12.96 40.00 9.09 17.39 NA NA 36.00 8.70 8.70 NA N jcn_only_AA RpL39,I_chr2R_19949515_19949720 chr2R - chr2R_19949805_19949910 chr2R_19949825_19949910 chr2R_19949911_19950046;chr2R_19949721_19949804 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21263124_21263722 chr2L_21263123_21263124;chr2L_21263722_21263723 chr2L_21262988_21263123;chr2L_21263723_21263786 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13413922_13414338 chr2R_13413921_13413922;chr2R_13414338_13414339 chr2R_13412209_13413921;chr2R_13414339_13414406 6.73 4.62 8.14 4.59 3.45 5.63 1.35 7.14 7.95 11.76 5.88 7.01 7.02 7.02 7.41 4.60 3.17 3.03 5.97 6.21 0.00 8.76 5.33 4.44 0.00 0.00 6.73 8.70 9.38 10.75 4.55 3.77 6.15 3.23 10.42 3.53 8.33 7.69 7.26 7.87 6.82 7.10 7.25 11.76 7.04 3.85 3.51 11.11 7.63 1.96 8.11 2.17 7.27 1.85 9.30 6.38 3.77 9.33 K intron_retention CG8177,I_chr3L_9774319_9774602 chr3L + chr3L_9777992_9778051 chr3L_9777991_9777992;chr3L_9778051_9778052 chr3L_9777797_9777991;chr3L_9778052_9778280 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG8494 chr2R + chr2R_10127619_10127715 chr2R_10127624_10127715 chr2R_10127716_10128082;chr2R_10127505_10127618 5.00 3.70 NA 4.00 NA NA 7.69 0.00 9.09 NA NA 5.56 NA NA NA NA NA NA NA 3.23 NA 5.71 5.56 3.45 4.17 NA 8.00 NA 5.00 5.00 15.00 0.00 NA 8.11 NA 0.00 0.00 0.00 2.70 7.69 NA 4.00 NA 7.69 NA 6.45 NA NA 3.70 14.29 5.08 NA 4.55 9.52 NA NA NA NA K intron_retention DNApol-epsilon,sec13,I_chr3R_19184824_19184875 chr3R + chr3R_19173984_19174044 chr3R_19173983_19173984;chr3R_19174044_19174045 chr3R_19173859_19173983;chr3R_19174045_19174171 1.28 0.00 0.00 31.03 13.33 0.00 0.00 12.90 2.56 0.00 9.52 0.00 0.00 7.69 6.90 5.88 NA 0.00 NA 0.00 0.00 6.25 0.00 0.00 3.85 3.45 18.92 12.50 0.00 0.00 0.00 NA 0.00 10.71 9.09 6.67 0.00 0.00 0.00 4.65 NA 8.57 NA 2.94 NA 5.26 NA 0.00 8.51 NA 0.00 0.00 NA NA 3.57 NA NA NA K cassette I_chr3L_19468806_19471399,CG32207 chr3L - chr3L_19470952_19471399 chr3L_19470952_19471006;chr3L_19471196_19471399 chr3L_19471007_19471195 chr3L_19470737_19470951;chr3L_19471400_19471499 100.00 100.00 NA NA NA NA 100.00 NA 83.33 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 87.50 83.33 83.33 NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA K intron_retention Klp10A,I_chrX_11030129_11030277,I_chrX_11030129_11030516 chrX - chrX_11030129_11030899 chrX_11030128_11030129;chrX_11030899_11030900 chrX_11030029_11030128;chrX_11030900_11031075 1.82 4.65 0.00 0.00 0.00 4.26 4.88 1.96 1.82 0.00 0.00 3.60 2.94 0.00 3.12 4.08 4.26 1.92 2.78 1.41 0.00 2.73 3.64 3.85 0.00 3.03 2.38 4.35 0.00 0.00 2.86 0.00 1.89 2.92 0.00 0.00 0.00 0.00 0.00 1.20 0.00 1.98 2.56 4.35 0.00 0.00 3.33 2.41 3.05 6.25 5.66 0.00 0.00 0.00 1.41 0.00 0.00 0.00 N cassette hrg chr2R - chr2R_15551990_15553029 chr2R_15551990_15552051;chr2R_15552172_15553029 chr2R_15552052_15552171 chr2R_15551451_15551989;chr2R_15553030_15553735 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.76 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG11148,I_chr4_876247_876311,I_chr4_882005_882418,RI_chr4_886921_887162 chr4 - chr4_876195_876311 chr4_876262_876311 chr4_876312_876411;chr4_876147_876194 96.15 95.45 94.44 87.63 100.00 94.12 98.11 99.05 97.74 NA 93.33 97.14 100.00 96.92 91.67 97.14 100.00 92.86 95.65 97.56 96.88 90.32 92.41 98.51 91.67 98.04 96.00 85.19 100.00 100.00 97.14 100.00 93.18 94.07 93.48 88.89 93.62 96.30 96.00 100.00 91.43 96.51 96.97 96.77 95.00 96.61 95.45 96.30 94.85 98.35 94.55 100.00 95.38 95.83 96.92 88.89 95.83 96.55 K mutually_exclusive Parp,F_chr3RHet_1961200_1961357,F_chr3RHet_1961573_1962006,F_chr3RHet_1962169_1962570 chr3RHet + chr3RHet_1937281_2018687,chr3RHet_2019258_2025472 chr3RHet_1937281_1964214,chr3RHet_1964749_2025472 chr3RHet_2018688_2019257 chr3RHet_1964215_1964748 chr3RHet_1936999_1937280;chr3RHet_2025473_2025629 50.00 50.00 25.00 50.00 NA 50.00 66.67 50.00 80.00 NA NA 50.00 66.67 33.33 50.00 62.50 66.67 NA 50.00 75.00 NA 66.67 NA NA NA 66.67 50.00 NA 50.00 NA 60.00 50.00 NA 66.67 33.33 NA 50.00 NA 50.00 33.33 50.00 50.00 66.67 25.00 NA 50.00 66.67 60.00 66.67 66.67 50.00 50.00 60.00 NA 33.33 33.33 33.33 60.00 K alternative_donor kar,I_chr3R_8510245_8510617,I_chr3R_8510258_8513437,I_chr3R_8514177_8514930 chr3R - chr3R_8510245_8513437;chr3R_8510245_8510655 chr3R_8510245_8510617 chr3R_8510234_8510244;chr3R_8513438_8513461 0.00 NA NA 0.00 NA NA 0.00 20.00 25.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 12.50 NA 3.57 11.11 0.00 NA NA NA NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 K intron_retention CG32486 chr3L - chr3L_3057271_3057429 chr3L_3057270_3057271;chr3L_3057429_3057430 chr3L_3056993_3057270;chr3L_3057430_3057582 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 1.89 0.00 0.00 1.71 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.60 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2611711_2611787 chr3L_2611710_2611711;chr3L_2611787_2611788 chr3L_2611639_2611710;chr3L_2611788_2612003 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.19 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG7971,I_chr3L_1659363_1659845,I_chr3L_1667736_1667806 chr3L - chr3L_1661593_1663919 chr3L_1661593_1661706;chr3L_1662382_1663919 chr3L_1661707_1662381 chr3L_1661227_1661592;chr3L_1663920_1664021 0.81 0.00 0.00 0.66 0.00 1.01 0.78 0.69 0.47 1.15 1.37 0.49 0.00 0.00 0.93 0.85 0.00 0.00 0.00 0.47 1.15 1.46 0.68 0.81 1.33 0.00 1.49 3.12 1.79 0.91 0.93 1.06 1.30 0.68 1.49 1.74 1.28 0.93 0.67 0.83 1.46 0.50 0.00 0.67 0.63 0.74 1.03 0.82 0.50 1.41 0.88 1.32 0.00 1.37 0.00 0.00 1.05 0.49 K alternative_acceptor Ranbp21,I_chrX_19545347_19545435,CG14223 chrX - chrX_19545347_19545435 chrX_19545351_19545435 chrX_19545436_19545535;chrX_19545247_19545346 97.50 100.00 93.75 100.00 100.00 100.00 100.00 95.00 91.67 96.77 100.00 97.14 NA 93.33 100.00 93.75 100.00 93.75 100.00 96.88 100.00 98.65 98.28 96.88 96.15 92.86 96.77 96.67 96.88 100.00 100.00 97.06 98.97 96.15 100.00 100.00 95.00 100.00 97.78 96.61 97.56 97.44 100.00 97.78 96.97 97.62 95.00 97.62 96.15 100.00 96.77 92.86 100.00 93.33 100.00 95.45 100.00 92.06 K jcn_only_AD RpL8,I_chr3L_2587513_2587750,I_chr3L_2587600_2587750,RI_chr3L_2587690_2587750,I_chr3L_2589746_2592161 chr3L + chr3L_2587514_2587750;chr3L_2587690_2587750 chr3L_2587600_2587750 chr3L_2587751_2587850;chr3L_2587500_2587513 0.02 0.06 0.00 0.00 0.02 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.02 0.00 0.00 0.01 0.00 0.07 0.00 0.02 0.00 0.00 0.04 0.03 0.03 0.05 0.02 0.05 0.03 0.02 0.10 0.07 0.00 0.03 0.05 0.02 0.00 0.01 0.00 0.08 0.00 0.03 0.03 0.00 0.01 0.06 0.14 0.08 0.14 0.30 0.02 0.05 0.13 0.00 K intron_retention CG4996,E_chr2R_13627553_13627643,I_chr2R_13629549_13629609 chr2R + chr2R_13627863_13627919 chr2R_13627862_13627863;chr2R_13627919_13627920 chr2R_13627644_13627862;chr2R_13627920_13628237 0.00 0.00 0.00 2.13 0.00 NA 0.00 0.00 0.00 NA 0.00 5.00 0.00 0.00 0.00 3.23 0.00 NA NA 0.00 4.55 0.00 0.00 0.00 8.70 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 3.70 NA 2.78 NA 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA K intron_retention AGO3,RI_chr3L_23627483_23630780,RI_chr3L_23673522_23682584 chr3L + chr3L_23627483_23642223 chr3L_23627482_23627483;chr3L_23642223_23642224 chr3L_23627383_23627482;chr3L_23642224_23642317 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.12 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 7.69 NA NA NA NA NA 0.00 NA NA NA 0.00 NA 0.00 NA 0.00 0.00 K intron_retention TM9SF4,I_chr2L_13774105_13774160 chr2L + chr2L_13771247_13771336 chr2L_13771246_13771247;chr2L_13771336_13771337 chr2L_13771129_13771246;chr2L_13771337_13772571 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.25 1.60 0.00 4.17 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD mys,I_chrX_7958795_7961094 chrX + chrX_7955904_7957872;chrX_7955908_7957872;chrX_7955914_7957872;chrX_7955759_7957872;chrX_7956114_7957872;chrX_7956125_7957872;chrX_7955967_7957872 chrX_7955901_7957872 chrX_7957873_7958492;chrX_7955741_7955758 0.24 0.00 0.38 0.00 0.00 0.00 0.83 0.24 0.90 0.00 0.44 0.42 0.00 0.37 1.47 0.00 0.47 0.00 0.00 0.00 0.00 0.28 0.00 0.53 0.00 0.68 0.00 1.27 0.83 0.46 0.25 0.00 0.59 0.00 0.00 0.63 0.68 0.76 0.97 0.00 0.85 0.19 1.58 0.51 0.57 0.00 0.00 0.00 0.00 0.00 1.63 0.78 0.00 0.00 0.32 0.00 0.00 0.42 K alternative_donor CG8173,I_chrX_17602681_17603175 chrX - chrX_17602681_17603214 chrX_17602681_17603175 chrX_17602581_17602680;chrX_17603215_17603275 2.20 3.28 5.56 4.29 3.77 0.00 2.38 3.51 3.25 0.00 5.88 3.85 2.70 0.00 2.44 1.19 0.00 0.00 0.00 3.19 0.00 NA 6.06 1.41 0.00 0.00 7.69 3.23 3.23 4.17 13.04 0.00 3.77 2.90 1.75 2.04 3.19 1.85 4.85 1.23 3.33 2.17 0.00 2.22 3.39 2.00 1.67 0.00 2.78 3.77 1.35 0.00 0.00 1.64 0.00 3.23 1.96 0.00 K jcn_only_AA tomosyn,I_chrX_12527065_12527950,I_chrX_12531219_12531470,I_chrX_12534873_12541731,I_chrX_12548772_12549203 chrX + chrX_12527991_12529764 chrX_12527991_12529731 chrX_12527964_12527990;chrX_12529765_12530316 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention I_chr3R_8822346_8822403,CG7518 chr3R + chr3R_8825496_8825573 chr3R_8825495_8825496;chr3R_8825573_8825574 chr3R_8825415_8825495;chr3R_8825574_8825735 0.00 5.41 0.00 4.92 0.00 0.00 3.23 1.05 2.11 NA 8.33 3.57 5.00 0.00 0.00 2.27 0.00 0.00 4.17 3.70 0.00 0.00 0.00 4.17 0.00 0.00 0.00 NA 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.32 0.00 0.00 NA 0.00 0.00 0.00 2.74 0.00 0.00 4.76 10.53 0.00 0.00 0.00 10.00 NA K intron_retention PHGPx chr3L + chr3L_3326368_3327342 chr3L_3326367_3326368;chr3L_3327342_3327343 chr3L_3326358_3326367;chr3L_3327343_3327394 90.70 87.88 80.46 94.97 88.33 84.91 94.74 90.32 90.76 89.74 87.50 87.98 93.75 85.94 91.76 91.01 92.00 90.54 93.07 94.54 87.84 88.71 87.88 93.55 89.66 89.09 96.77 98.53 98.17 96.00 89.47 94.44 93.57 90.70 90.48 95.59 87.88 82.61 81.82 92.59 96.67 86.93 86.89 92.00 94.70 90.11 95.24 96.43 90.58 85.29 81.82 95.65 85.71 100.00 86.73 91.30 91.18 95.69 K jcn_only_AD mthl3 chr2R - chr2R_13338538_13338593;chr2R_13338538_13340067;chr2R_13338538_13340031;chr2R_13338538_13339957 chr2R_13338538_13340007 chr2R_13338407_13338537;chr2R_13340068_13340078 2.56 4.76 0.00 0.00 NA NA 12.90 0.00 6.12 NA 9.52 0.00 4.26 6.67 5.00 2.33 3.23 0.00 3.70 5.56 0.00 0.00 NA NA NA NA 0.00 NA NA NA 5.88 NA NA 4.00 3.85 NA NA NA NA NA NA 2.56 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 4.35 NA NA NA K cassette EcR,I_chr2R_2005385_2010386 chr2R - chr2R_1982577_2018570 chr2R_1982577_2010386;chr2R_2011353_2018570 chr2R_2010387_2011352 chr2R_1982062_1982576;chr2R_2018571_2018629 98.59 100.00 100.00 95.83 100.00 97.06 91.18 97.92 97.30 97.83 95.83 98.48 96.00 100.00 97.78 100.00 100.00 100.00 96.55 95.29 96.67 91.38 100.00 98.67 100.00 100.00 98.08 95.56 97.73 100.00 96.55 100.00 98.72 100.00 100.00 97.78 98.86 100.00 98.59 95.29 100.00 97.44 100.00 100.00 100.00 98.28 97.87 97.94 100.00 100.00 98.28 100.00 97.37 100.00 97.37 97.30 100.00 100.00 K cassette CG18177,I_chr3L_9723741_9723833 chr3L + chr3L_9721008_9721312 chr3L_9721008_9721084;chr3L_9721250_9721312 chr3L_9721085_9721249 chr3L_9720887_9721007;chr3L_9721313_9721317 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention RpS3A,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87648_87717 chr4_87647_87648;chr4_87717_87718 chr4_87466_87647;chr4_87718_87817 99.97 99.96 99.98 100.00 99.83 99.98 99.96 100.00 99.96 100.00 100.00 99.99 100.00 99.95 100.00 99.97 100.00 99.89 100.00 99.99 99.97 99.87 99.96 99.87 99.96 99.98 99.97 99.96 100.00 99.88 99.76 99.92 99.95 99.99 99.87 100.00 99.93 99.94 99.97 99.88 99.97 99.99 100.00 99.93 100.00 99.96 99.97 99.98 99.97 99.96 99.97 99.76 99.96 100.00 100.00 99.95 99.91 99.98 K intron_retention I_chr2R_4783150_4783708,Ggamma1,noncoding_5300 chr2R + chr2R_4788937_4789832 chr2R_4788936_4788937;chr2R_4789832_4789833 chr2R_4788908_4788936;chr2R_4789833_4790635 97.83 98.48 97.56 98.18 97.56 98.72 97.85 99.29 96.12 100.00 98.63 98.45 98.75 98.82 91.84 99.03 97.83 98.15 96.59 96.61 98.46 98.11 100.00 96.08 97.44 95.29 100.00 94.12 97.73 96.97 97.67 96.08 98.44 97.32 100.00 100.00 97.83 97.44 98.59 98.73 97.67 96.53 97.96 100.00 98.39 97.83 96.00 100.00 96.40 97.67 100.00 96.88 96.00 98.00 94.05 98.11 94.23 96.67 K jcn_only_AA CG32809,I_chrX_1576304_1577129,I_chrX_1576463_1577129,I_chrX_1576815_1577129,I_chrX_1577031_1577129,CEI_chrX_1579569_1579679,RI_chrX_1585391_1586471,I_chrX_1589508_1589564 chrX - chrX_1576962_1577129 chrX_1577031_1577129 chrX_1577130_1577229;chrX_1576949_1576961 11.41 NA NA NA NA NA NA NA 14.71 NA NA NA NA NA NA NA NA NA NA 12.12 NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA 4.35 NA NA NA NA 10.71 NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA N intron_retention CG8839,I_chr2R_8229288_8231538 chr2R - chr2R_8228920_8228992 chr2R_8228919_8228920;chr2R_8228992_8228993 chr2R_8228715_8228919;chr2R_8228993_8229287 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 29.58 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor AGO1,I_chr2R_9844856_9845327 chr2R - chr2R_9844856_9845466 chr2R_9844856_9845327 chr2R_9844756_9844855;chr2R_9845467_9845645 10.00 7.69 12.90 6.67 NA 7.41 19.23 2.78 15.38 NA 18.18 5.45 13.04 9.52 5.71 6.67 14.29 19.35 4.17 12.70 10.00 10.53 12.50 NA 13.33 7.69 14.29 NA 10.00 3.33 7.41 NA 6.82 13.16 10.53 13.64 NA NA NA 36.84 NA 10.87 15.79 7.69 NA 5.56 NA 7.69 8.93 NA 14.29 5.56 NA NA 3.12 NA NA 6.67 K intron_retention CEI_chrX_17177009_17196871,CG5445,I_chrX_17196752_17196871,RI_chrX_17196772_17196871,I_chrX_17196820_17196875,I_chrX_17198393_17198730 chrX + chrX_17196798_17196871 chrX_17196797_17196798;chrX_17196871_17196872 chrX_17196720_17196797;chrX_17196872_17196971 65.94 70.59 84.62 84.62 NA 63.64 61.54 80.00 77.78 NA NA 63.16 NA NA 63.64 94.74 66.67 60.00 91.67 55.17 53.85 NA 83.33 66.67 NA 60.00 68.42 55.00 47.06 56.25 75.00 NA 57.14 81.25 58.33 75.00 50.00 70.00 56.25 58.82 36.36 66.67 70.00 70.00 57.14 50.00 66.67 43.75 65.22 57.14 77.78 NA NA NA 69.23 58.33 69.23 66.67 N mutually_exclusive CG18769,I_chr3L_6544367_6555421 chr3L + chr3L_6543970_6555421,chr3L_6555519_6583703 chr3L_6543970_6544873,chr3L_6545050_6583703 chr3L_6555422_6555518 chr3L_6544874_6545049 chr3L_6543963_6543969;chr3L_6583704_6583935 30.95 NA NA NA NA NA 60.00 0.00 NA 60.00 0.00 NA NA NA NA NA NA NA NA NA NA 28.57 NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor RpS30 chr3R + chr3R_16676350_16676576 chr3R_16676418_16676576 chr3R_16676577_16676665;chr3R_16676349_16676349 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 K intron_retention tai,I_chr2L_9191814_9206231 chr2L + chr2L_9235264_9238957 chr2L_9235263_9235264;chr2L_9238957_9238958 chr2L_9235102_9235263;chr2L_9238958_9239762 27.59 20.00 34.95 52.90 16.67 23.08 26.60 25.57 21.15 31.25 17.65 29.21 20.00 26.32 22.83 34.25 21.05 9.09 29.66 26.85 26.56 23.50 30.88 30.34 24.44 25.56 25.23 36.90 25.00 26.95 39.05 52.08 33.12 26.99 36.11 29.41 13.46 14.29 25.66 36.78 68.75 26.29 31.25 18.71 71.43 61.59 50.98 42.53 27.71 51.47 26.02 18.18 37.78 71.43 31.03 27.59 52.63 57.14 K jcn_only_AD Aats-gly,CG6854 chr3L + chr3L_15088286_15088373 chr3L_15088312_15088373 chr3L_15088374_15090790;chr3L_15088282_15088285 0.21 0.00 1.08 0.00 0.00 0.00 0.55 0.51 0.34 0.00 0.76 2.54 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.29 1.64 1.06 0.00 0.00 0.00 0.00 2.44 0.00 1.32 1.32 0.00 0.47 0.52 0.00 1.25 0.00 0.99 1.54 1.06 0.29 1.12 0.67 0.00 0.00 0.51 0.41 0.00 0.21 0.73 1.41 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.41 K alternative_donor Pvr,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8230332_8239691 chr2L_8230332_8239074 chr2L_8230232_8230331;chr2L_8239692_8239845 0.00 0.73 0.00 0.33 0.00 0.00 0.53 0.27 0.28 1.92 1.12 0.27 0.68 0.00 0.51 0.36 0.00 0.00 0.52 0.53 0.00 2.70 0.00 0.00 0.00 0.74 0.76 0.00 3.45 0.00 0.00 0.00 0.00 0.30 0.00 0.70 0.00 0.00 0.83 0.60 0.00 0.28 0.00 1.09 0.00 0.99 0.00 1.39 0.24 0.00 0.47 0.00 0.00 0.00 0.42 0.00 0.00 0.00 K intron_retention CG3198,I_chrX_6566369_6566452 chrX - chrX_6566369_6566652 chrX_6566368_6566369;chrX_6566652_6566653 chrX_6566295_6566368;chrX_6566653_6567596 0.00 0.00 0.00 1.89 0.00 3.12 0.00 2.60 1.17 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 1.15 1.89 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.56 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.97 0.00 1.06 0.00 0.88 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.67 0.00 K jcn_only_AD CG1354,I_chrX_9672972_9673084 chrX + chrX_9672833_9672900 chrX_9672843_9672900 chrX_9672901_9672946;chrX_9672779_9672832 78.50 74.19 87.67 75.47 83.33 84.31 81.82 81.01 74.29 NA 73.08 81.31 82.09 76.79 76.71 75.42 81.25 79.17 76.36 79.17 78.43 NA 81.82 84.21 91.67 83.93 74.47 85.71 NA NA 78.57 NA NA 77.11 NA NA 84.34 61.90 76.12 73.33 NA 75.21 76.60 85.00 86.36 NA 87.50 NA 80.43 81.25 70.37 77.78 78.26 NA 73.42 73.91 74.36 NA K intron_retention CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516706_21517821 chr3L_21516705_21516706;chr3L_21517821_21517822 chr3L_21516653_21516705;chr3L_21517822_21517920 47.06 NA NA NA NA NA 23.53 NA 45.45 NA NA 66.67 NA NA NA NA NA NA NA 30.00 NA 77.78 NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA 46.67 NA NA NA NA NA 50.00 47.06 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG9350 chr2R + chr2R_16912652_16912845 chr2R_16912666_16912845 chr2R_16912846_16913108;chr2R_16912583_16912651 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.47 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K alternative_donor cora,I_chr2R_15116651_15116928,I_chr2R_15129291_15129988 chr2R + chr2R_15116620_15116928 chr2R_15116651_15116928 chr2R_15116929_15117028;chr2R_15116580_15116619 0.00 0.00 0.00 1.64 0.00 0.00 1.30 0.42 0.00 NA 2.27 1.13 0.00 0.00 1.00 1.08 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 4.55 0.00 0.00 0.00 0.00 0.86 NA NA 0.00 5.26 0.00 0.00 NA 1.52 0.00 0.00 0.00 0.00 NA 0.00 0.56 0.00 0.00 2.70 NA NA 0.98 NA 0.00 0.00 N multi_cassette CG31619,I_chr2L_21725446_21728027 chr2L + chr2L_21719644_21728027 chr2L_21719644_21720358;chr2L_21720482_21725067;chr2L_21725446_21728027 chr2L_21720359_21720481;chr2L_21725068_21725445 chr2L_21719514_21719643;chr2L_21728028_21728127 100.00 100.00 100.00 64.71 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N jcn_only_AD par-1,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15344481_15347299 chr2R_15347232_15347299 chr2R_15347300_15348121;chr2R_15343700_15344480 0.00 0.00 0.00 0.00 0.00 0.00 8.00 0.00 0.00 NA 0.00 10.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 14.29 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K intron_retention egr,I_chr2R_5970832_5970930,I_chr2R_5970999_5971058 chr2R + chr2R_5970832_5970908 chr2R_5970831_5970832;chr2R_5970908_5970909 chr2R_5970767_5970831;chr2R_5970909_5970998 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.30 0.00 0.00 0.77 0.00 0.00 1.53 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.56 1.35 0.00 2.42 5.13 2.40 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 1.19 0.00 0.60 0.00 0.00 0.00 0.00 0.45 0.00 0.29 0.00 0.64 0.00 0.38 0.00 0.00 0.36 0.00 0.41 K jcn_only_AD CEI_chr3R_10927927_10937314,CG6934 chr3R - chr3R_10937912_10957329;chr3R_10937912_10957457 chr3R_10937912_10957499 chr3R_10937315_10937911;chr3R_10957500_10957513 0.00 0.00 4.17 0.00 NA 0.00 NA 2.13 0.00 NA 0.00 1.79 NA 0.00 3.03 0.00 NA 1.32 2.22 1.89 0.00 4.35 0.00 0.00 0.00 NA 0.00 2.27 2.08 2.22 0.00 NA 0.00 0.00 0.00 1.96 0.00 2.56 1.64 1.27 0.00 0.00 0.00 1.30 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 3.85 NA 3.03 K alternative_donor mRpL52,REI_chr2R_3561489_3561568,I_chr2R_3574133_3574191 chr2R - chr2R_3561489_3561568 chr2R_3561489_3561548 chr2R_3561421_3561488;chr2R_3561569_3561634 97.78 98.41 97.37 97.37 100.00 100.00 97.62 97.78 98.80 95.83 97.50 96.83 95.24 96.88 97.83 96.97 100.00 100.00 100.00 95.56 97.62 100.00 98.53 98.33 97.22 97.30 98.48 96.77 100.00 100.00 95.12 94.87 97.96 97.67 90.32 95.56 98.92 98.53 98.68 100.00 97.73 100.00 96.30 97.92 98.11 98.63 96.34 97.14 94.64 98.18 98.39 96.67 97.40 98.51 97.78 97.40 97.67 98.51 K alternative_donor CG6236 chr3R - chr3R_11153785_11153876;chr3R_11153785_11153869 chr3R_11153785_11153849 chr3R_11153649_11153784;chr3R_11153877_11153988 17.39 19.05 10.53 19.15 27.27 19.05 18.42 18.33 19.77 17.14 18.18 23.08 33.33 31.25 10.53 14.58 NA 15.38 15.38 19.00 30.00 31.03 10.00 16.33 20.00 30.00 11.94 13.51 15.56 16.42 20.00 12.70 16.26 17.54 12.82 13.89 15.09 10.94 22.22 17.86 15.09 17.14 23.08 16.28 20.00 16.90 12.20 19.64 20.31 14.89 14.75 21.43 20.00 17.24 21.05 14.29 12.50 22.83 K intron_retention CG5009 chr2R + chr2R_13651557_13651615 chr2R_13651556_13651557;chr2R_13651615_13651616 chr2R_13651404_13651556;chr2R_13651616_13652065 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG30492,C_chr2R_3522706_3523025,RI_chr2R_3536203_3536977,I_chr2R_3543397_3543455 chr2R + chr2R_3528123_3535801 chr2R_3528123_3528336 chr2R_3527622_3528122;chr2R_3535802_3535913 16.67 18.75 16.67 10.00 12.50 16.67 42.86 17.74 20.93 16.00 53.57 21.88 32.35 25.93 25.81 15.91 17.50 13.33 17.50 31.08 26.67 15.38 16.67 15.15 16.67 7.32 16.67 41.67 25.00 20.83 16.13 17.65 31.82 25.00 19.05 35.00 10.42 13.04 15.15 22.50 9.09 20.00 14.29 21.05 11.54 8.82 9.09 28.57 23.33 10.34 18.18 23.53 10.71 7.69 16.67 8.82 13.33 15.15 K intron_retention CG8889 chr2R - chr2R_7914348_7914405 chr2R_7914347_7914348;chr2R_7914405_7914406 chr2R_7914295_7914347;chr2R_7914406_7914490 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 NA 100.00 91.67 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 96.15 88.89 100.00 100.00 95.00 90.91 100.00 100.00 100.00 100.00 95.24 95.65 100.00 100.00 100.00 100.00 100.00 100.00 NA K alternative_donor alt,I_chr3R_13503901_13504925,RI_chr3R_13503901_13505368,I_chr3R_13503901_13507824 chr3R - chr3R_13503901_13507816;chr3R_13503901_13508123;chr3R_13503901_13508180 chr3R_13503901_13508178 chr3R_13503801_13503900;chr3R_13508181_13508234 78.57 83.33 84.85 87.10 92.00 92.31 75.61 86.36 83.33 57.14 55.88 89.80 90.48 92.31 88.57 81.82 88.00 87.18 84.38 81.94 57.14 53.85 78.57 72.73 77.78 89.47 66.67 54.55 40.00 66.67 81.82 83.33 45.45 84.91 75.00 33.33 66.67 80.00 66.67 64.71 60.00 82.14 89.29 66.67 76.92 57.14 75.00 57.14 88.57 75.00 63.64 80.00 83.33 NA 86.49 71.43 78.57 66.67 K alternative_donor su(s) chrX + chrX_535224_535329 chrX_535236_535329 chrX_535330_537684;chrX_535111_535223 100.00 100.00 100.00 95.24 100.00 100.00 95.00 100.00 97.44 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 92.86 100.00 92.31 100.00 100.00 94.74 100.00 90.91 100.00 100.00 96.30 100.00 100.00 97.22 100.00 95.65 100.00 92.86 100.00 100.00 100.00 100.00 95.24 83.33 100.00 100.00 95.83 100.00 100.00 92.86 K intron_retention Nopp140,I_chr3L_21828330_21828566,I_chr3L_21828986_21829082 chr3L + chr3L_21826078_21826279 chr3L_21826077_21826078;chr3L_21826279_21826280 chr3L_21825884_21826077;chr3L_21826280_21827176 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 2.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Wwox,I_chr2L_8000434_8000497,Spn28D chr2L - chr2L_8000434_8003283 chr2L_8000434_8000497 chr2L_8000366_8000433;chr2L_8003284_8003463 0.00 3.57 3.85 0.00 NA 0.00 0.00 2.86 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 2.33 3.45 0.00 0.00 NA NA 0.00 4.55 0.00 3.45 3.23 0.00 NA 0.00 NA 0.00 0.00 2.86 NA 0.00 NA 4.00 2.86 3.33 2.78 3.33 2.38 4.55 0.00 NA 6.52 2.78 0.00 0.00 2.56 0.00 K jcn_only_AD bon chr3R + chr3R_16434258_16434353 chr3R_16434276_16434353 chr3R_16434354_16434483;chr3R_16433872_16434257 66.67 73.81 77.78 61.70 NA 63.89 79.31 45.00 71.19 76.60 60.87 61.54 66.67 NA 62.50 63.64 47.83 69.05 66.67 71.64 67.74 70.00 59.70 72.00 58.82 57.14 45.71 48.39 76.09 60.00 60.00 55.88 67.12 65.57 67.65 57.58 65.96 61.70 69.64 70.18 56.67 66.13 70.00 70.45 67.31 89.19 75.00 70.00 80.00 57.89 64.00 55.00 75.86 69.23 82.22 71.88 84.00 65.38 K alternative_acceptor CG11686 chr3R + chr3R_9086141_9087326 chr3R_9086141_9087299 chr3R_9086072_9086140;chr3R_9087327_9087492 0.00 NA 0.00 NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention Cnx99A,I_chr3R_25142581_25142644,I_chr3R_25144335_25145173,I_chr3R_25145243_25145309,I_chr3R_25145256_25145426 chr3R - chr3R_25142352_25142441 chr3R_25142351_25142352;chr3R_25142441_25142442 chr3R_25142226_25142351;chr3R_25142442_25142582 50.00 NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 61.54 NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor bun,I_chr2L_12520177_12536274,I_chr2L_12537393_12537634,RI_chr2L_12540901_12546409 chr2L - chr2L_12537390_12537634 chr2L_12537420_12537634 chr2L_12537635_12537681;chr2L_12537293_12537389 97.87 96.67 100.00 100.00 96.00 100.00 95.00 100.00 100.00 94.74 100.00 97.87 100.00 100.00 96.15 96.43 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 95.24 100.00 100.00 94.74 93.33 92.31 94.74 90.91 94.74 97.56 100.00 80.00 94.12 97.44 97.83 98.11 100.00 100.00 100.00 97.50 100.00 94.12 95.45 100.00 94.29 84.21 93.02 100.00 94.74 93.75 100.00 95.45 100.00 100.00 K jcn_only_AA ck,RI_chr2L_15057324_15057667 chr2L - chr2L_15053518_15057667 chr2L_15053523_15057667 chr2L_15057668_15057767;chr2L_15053414_15053517 68.18 NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA 68.18 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.48 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911803_5913354;chr2R_5911708_5913354;chr2R_5911755_5913354 chr2R_5911865_5913354 chr2R_5913355_5913433;chr2R_5911703_5911707 0.00 NA 0.00 NA 9.52 NA NA 0.00 2.13 NA NA 0.00 NA 5.00 NA 0.00 7.69 NA 0.00 0.00 3.57 NA 0.00 NA NA NA NA NA NA 0.00 5.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA NA NA NA 2.78 NA NA NA NA NA 0.00 NA NA NA K alternative_acceptor zormin,I_chr3L_2128755_2129053,RI_chr3L_2139943_2140057 chr3L - chr3L_2129785_2130792 chr3L_2129787_2130792 chr3L_2130793_2131250;chr3L_2129580_2129784 100.00 100.00 100.00 NA NA NA 100.00 100.00 93.33 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA 100.00 96.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 NA N alternative_donor CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806824_22807254;chr3R_22806425_22807254;chr3R_22806454_22807254 chr3R_22806725_22807254 chr3R_22807255_22807473;chr3R_22806325_22806424 2.63 2.04 1.88 1.02 5.88 2.70 0.70 0.73 0.99 8.70 3.39 14.67 1.78 1.06 2.23 0.51 1.49 2.19 1.46 1.00 2.24 3.03 1.83 2.53 4.84 2.67 7.02 17.65 7.50 6.67 1.95 8.96 5.43 0.88 3.30 6.67 8.33 4.65 8.16 3.74 8.47 0.77 1.12 3.17 9.09 2.38 1.54 3.23 0.87 6.67 1.64 3.17 1.72 2.00 1.46 3.57 2.63 2.75 K intron_retention spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20343948_20345524 chr2L_20343947_20343948;chr2L_20345524_20345525 chr2L_20343743_20343947;chr2L_20345525_20345670 19.05 7.41 18.75 10.20 35.71 6.67 32.00 36.36 17.50 NA 10.53 13.33 23.08 NA 35.71 NA NA 33.33 13.33 33.33 11.11 17.24 14.29 17.86 25.00 NA 19.05 6.98 5.00 25.00 33.33 NA 35.71 41.18 4.55 0.00 8.57 16.67 6.06 23.08 NA 20.00 30.77 31.25 NA 14.29 29.41 26.32 28.00 13.51 25.93 NA NA NA 30.00 35.00 17.65 NA K intron_retention CG6294,CG6299,I_chrX_15358771_15359763,I_chrX_15359667_15359763 chrX + chrX_15358459_15359763 chrX_15358458_15358459;chrX_15359763_15359764 chrX_15357988_15358458;chrX_15359764_15359863 40.00 NA NA NA NA NA NA 53.85 50.00 NA NA 77.78 25.00 66.67 NA NA NA NA NA 57.69 NA 41.67 25.00 NA NA NA NA NA 46.15 NA NA NA 33.33 66.67 NA NA 31.58 NA 38.46 44.44 21.43 61.11 NA 31.25 23.08 40.00 19.05 NA 54.55 25.00 26.32 NA NA NA NA NA NA NA K intron_retention CG16890 chr2L - chr2L_13782946_13782996 chr2L_13782945_13782946;chr2L_13782996_13782997 chr2L_13782847_13782945;chr2L_13782997_13783457 11.43 NA NA NA NA NA NA NA 16.67 NA NA 0.00 NA NA 23.53 NA NA NA NA 16.13 NA 23.53 60.00 NA NA NA NA NA 29.41 NA NA 0.00 14.29 NA NA 33.33 0.00 28.57 5.56 0.00 8.00 NA NA 18.75 3.45 25.00 9.09 7.41 0.00 25.00 6.67 NA 9.52 20.00 NA 6.25 13.33 0.00 K alternative_acceptor Cg25C,I_chr2L_5029811_5029873 chr2L + chr2L_5029811_5030136 chr2L_5029811_5029873 chr2L_5029711_5029810;chr2L_5030137_5030237 0.00 0.00 0.00 5.88 4.76 5.56 12.50 0.00 1.37 NA 2.17 3.85 7.55 10.00 0.00 0.00 0.00 0.00 0.00 2.41 0.00 14.29 2.13 2.13 0.00 0.00 3.70 0.00 0.00 NA 0.00 NA 0.00 3.57 0.00 4.17 2.70 0.00 0.00 5.13 0.00 1.59 0.00 2.86 NA 0.00 NA 0.00 3.85 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 2.08 K jcn_only_AA Fps85D,I_chr3R_5194729_5194776,I_chr3R_5216796_5218450 chr3R - chr3R_5195433_5198477;chr3R_5198300_5198477 chr3R_5198303_5198477 chr3R_5198478_5198655 0.00 0.00 0.00 0.00 0.95 0.90 0.00 1.80 0.00 0.00 0.00 0.53 0.00 0.85 0.00 0.00 0.00 0.00 0.84 0.00 0.00 1.54 2.07 0.00 0.00 0.00 0.00 0.00 1.03 1.80 0.76 1.08 0.00 0.55 0.00 2.97 1.56 0.00 0.71 0.00 1.23 0.48 0.00 0.74 1.11 0.00 0.00 0.69 0.88 0.00 0.76 3.08 0.00 1.41 0.00 0.00 1.05 1.03 K intron_retention fs(1)h,I_chrX_7947328_7948140,I_chrX_7950171_7952371,I_chrX_7954192_7955240 chrX - chrX_7947328_7948155 chrX_7947327_7947328;chrX_7948155_7948156 chrX_7947228_7947327;chrX_7948156_7948240 0.00 3.64 3.03 2.44 0.00 1.85 5.17 0.00 1.52 0.00 0.00 0.00 2.56 0.00 2.60 0.00 0.00 0.00 1.92 0.00 4.44 0.98 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 1.42 1.96 0.00 0.00 0.00 0.00 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ant2,sesB chrX - chrX_10676714_10678383 chrX_10676713_10676714;chrX_10678383_10678384 chrX_10676413_10676713;chrX_10678384_10678390 7.69 3.57 5.00 6.56 8.16 7.32 8.62 4.72 7.26 16.00 1.92 9.47 14.29 9.26 5.77 2.33 8.00 13.79 6.25 5.68 7.69 12.00 4.55 4.92 9.38 10.26 17.39 8.33 NA 7.69 4.62 9.52 1.41 7.78 8.77 16.67 11.63 11.11 10.64 8.51 7.69 7.14 9.09 8.51 10.34 4.62 0.00 14.29 5.50 5.71 4.11 3.39 8.70 5.00 8.06 6.06 4.17 7.41 K jcn_only_AA CG8786 chr3L - chr3L_19634085_19634164;chr3L_19633702_19634164 chr3L_19633419_19634164 chr3L_19634165_19634318;chr3L_19632984_19633418 78.24 NA NA NA NA NA 62.50 91.30 NA NA NA 58.62 NA NA NA NA NA NA NA 94.44 NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 82.61 NA 73.91 NA NA NA NA NA NA 81.48 NA NA NA NA NA NA NA NA NA K intron_retention RpLP1,I_chr2L_420147_420282,I_chr2L_420147_420300,E_chr2L_420151_420297,I_chr2L_420231_420291,E_chr2L_422193_422242 chr2L + chr2L_420147_420291 chr2L_420146_420147;chr2L_420291_420292 chr2L_420131_420146;chr2L_420292_420382 0.03 0.02 0.03 0.05 0.03 0.00 0.04 0.04 0.02 0.02 0.05 0.03 0.01 0.02 0.02 0.02 0.00 0.00 0.03 0.03 0.03 0.03 0.03 0.03 0.08 0.03 0.12 0.70 0.20 0.00 0.02 0.03 0.00 0.05 0.07 0.05 0.02 0.02 0.03 0.03 0.00 0.04 0.00 0.02 0.02 0.03 0.02 0.00 0.06 0.05 0.04 0.03 0.02 0.04 0.02 0.04 0.02 0.00 K intron_retention CG8001 chr3L + chr3L_1758147_1758206 chr3L_1758146_1758147;chr3L_1758206_1758207 chr3L_1757328_1758146;chr3L_1758207_1758349 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 4.00 0.00 0.00 0.00 5.56 0.00 2.94 1.37 0.00 0.00 0.00 0.00 3.57 0.00 7.32 8.82 0.00 0.00 0.00 0.00 1.49 0.00 0.00 4.35 2.13 0.00 0.00 0.00 4.44 1.61 0.00 0.00 0.00 2.00 2.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 5.56 0.00 1.49 K jcn_only_AA CG32016,I_chr4_972691_972763,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_972704_972763;chr4_972691_972763 chr4_972719_972763 chr4_972764_972863;chr4_972619_972690 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.91 0.00 3.23 0.00 1.90 0.00 0.00 0.00 0.72 1.85 0.00 0.00 1.30 0.00 0.00 2.56 4.17 0.00 0.00 2.94 0.00 0.00 1.49 0.00 2.38 1.92 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 1.82 0.00 0.00 0.85 0.00 1.49 0.00 0.00 0.00 0.00 0.00 1.33 0.00 K intron_retention RhoGAP71E,I_chr3L_15583097_15589765 chr3L + chr3L_15594396_15594742 chr3L_15594395_15594396;chr3L_15594742_15594743 chr3L_15594333_15594395;chr3L_15594743_15595615 100.00 100.00 NA 100.00 NA NA 100.00 100.00 94.74 NA 100.00 94.44 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 92.86 100.00 100.00 100.00 100.00 91.67 100.00 96.15 100.00 100.00 NA 90.91 NA NA NA 100.00 92.86 100.00 100.00 90.00 NA NA 90.91 NA NA NA K intron_retention CG17018,R_chr2L_22312023_22363414,CEI_chr2L_22325847_22356902 chr2L + chr2L_22357048_22363429 chr2L_22357047_22357048;chr2L_22363429_22363430 chr2L_22356908_22357047;chr2L_22363430_22363514 50.00 42.86 59.42 55.88 42.11 41.67 74.29 55.91 50.51 67.65 86.54 44.64 73.91 51.72 60.00 42.86 66.07 77.50 59.65 52.17 90.24 54.55 48.15 55.56 48.15 63.04 56.76 45.95 38.89 24.59 61.54 37.50 21.59 50.50 27.45 25.00 46.81 50.00 50.00 47.45 32.56 52.04 51.06 39.53 42.86 39.24 29.03 29.63 52.10 58.33 37.74 60.00 28.26 52.63 52.05 39.39 38.89 12.25 K intron_retention CkIIalpha,I_chr3L_23092989_23093344,RI_chr3L_23094196_23095221 chr3L + chr3L_23092824_23093344 chr3L_23092823_23092824;chr3L_23093344_23093345 chr3L_23092680_23092823;chr3L_23093345_23093444 0.00 NA NA NA NA NA NA 23.08 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3088129_3088191;chr3L_3088139_3088191;chr3L_3088124_3088191 chr3L_3088120_3088191 chr3L_3088192_3088663;chr3L_3087957_3088119 98.82 99.09 100.00 98.02 99.38 100.00 99.12 98.05 98.85 97.80 100.00 98.99 100.00 97.22 96.34 98.94 97.06 98.90 100.00 98.68 100.00 98.74 99.32 98.73 97.39 100.00 99.06 98.44 99.24 99.53 98.27 99.28 99.04 98.82 98.18 98.38 100.00 98.37 97.39 100.00 98.96 97.53 100.00 98.42 98.46 96.84 98.72 98.64 98.74 98.47 98.06 98.37 98.48 100.00 99.54 99.12 97.88 99.56 K jcn_only_AA Fur1,I_chr3R_21179328_21179393,I_chr3R_21179590_21179870,CEI_chr3R_21210600_21222433,I_chr3R_21257704_21287086 chr3R - chr3R_21177915_21179870;chr3R_21179590_21179870 chr3R_21177936_21179870 chr3R_21179871_21179970;chr3R_21177839_21177914 0.00 0.00 0.00 1.20 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3700,MED23 chr2R + chr2R_18782520_18782582 chr2R_18782519_18782520;chr2R_18782582_18782583 chr2R_18782306_18782519;chr2R_18782583_18783211 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 13.04 6.90 0.00 5.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 2.13 2.38 0.00 0.00 5.77 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG18659,E_chr2R_5011363_5019110,RI_chr2R_5013572_5014531,I_chr2R_5016147_5016997 chr2R - chr2R_5011645_5013055 chr2R_5011644_5011645;chr2R_5013055_5013056 chr2R_5011194_5011644;chr2R_5013056_5013571 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 NA 100.00 100.00 100.00 NA 91.67 NA 90.91 100.00 90.00 96.55 100.00 97.56 100.00 92.86 100.00 100.00 90.91 100.00 92.31 100.00 90.91 100.00 100.00 95.65 92.86 88.89 95.83 77.78 100.00 100.00 100.00 96.15 NA 100.00 100.00 93.33 93.75 100.00 100.00 92.86 94.12 NA NA 100.00 100.00 78.57 100.00 92.31 K jcn_only_AD Dscam,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3249373_3250528;chr2R_3249373_3251682;chr2R_3249373_3254309;chr2R_3249373_3253447;chr2R_3249373_3252522;chr2R_3249373_3252236;chr2R_3249373_3253970;chr2R_3249373_3250836;chr2R_3249373_3251960;chr2R_3249373_3251099 chr2R_3249373_3252816 chr2R_3249273_3249372 12.00 10.71 19.15 14.06 12.00 16.13 15.00 13.79 7.32 18.18 NA 10.29 13.51 5.88 12.20 9.43 11.11 22.58 0.00 21.11 12.00 6.25 14.29 27.78 12.77 8.00 10.81 9.68 7.14 4.71 15.69 10.71 13.75 20.00 9.68 38.10 23.64 23.68 17.07 11.24 6.90 12.31 6.25 22.41 4.55 10.53 16.67 6.98 17.91 NA 13.33 10.00 9.68 NA 7.69 5.00 NA 4.35 K intron_retention Stim chrX - chrX_15831788_15832790 chrX_15831787_15831788;chrX_15832790_15832791 chrX_15831624_15831787;chrX_15832791_15833231 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 1.98 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG12582 chr3R + chr3R_29885_29940;chr3R_29885_29934 chr3R_29885_29987 chr3R_29816_29884;chr3R_29988_30053 15.57 13.51 11.02 11.24 15.58 19.85 13.04 15.72 15.66 12.58 16.13 17.36 11.67 15.57 11.70 13.28 15.15 13.77 13.24 13.02 16.54 14.20 15.61 19.01 15.52 19.51 11.97 6.75 18.57 16.59 11.89 15.13 15.84 17.16 16.67 40.84 14.91 16.84 17.34 14.36 14.14 16.17 18.18 12.10 12.58 14.25 17.04 13.41 12.94 17.08 17.72 18.55 13.38 16.03 16.37 16.73 15.70 13.07 K intron_retention cul-2,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21660065_21660122 chr2L_21660064_21660065;chr2L_21660122_21660123 chr2L_21659996_21660064;chr2L_21660123_21660211 3.00 2.83 1.48 3.30 1.89 4.08 3.43 4.61 2.12 0.00 3.23 3.39 3.45 3.42 3.65 3.17 2.86 1.89 2.80 2.48 1.87 2.17 3.59 3.50 4.02 3.03 8.85 7.03 2.86 2.10 3.29 4.76 2.11 3.52 2.86 3.72 2.86 0.00 6.25 3.57 2.55 4.72 3.41 3.00 0.00 3.57 0.81 3.68 3.54 0.88 2.25 4.42 1.10 1.12 1.97 2.78 1.38 1.49 K mutually_exclusive Atpalpha,I_chr3R_16783890_16785070,I_chr3R_16788018_16789830,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16774552_16787936,chr3R_16788018_16789446 chr3R_16774552_16786447,chr3R_16786552_16789446 chr3R_16787937_16788017 chr3R_16786448_16786551 chr3R_16774539_16774551;chr3R_16789447_16789578 2.71 0.00 0.00 2.74 0.00 6.25 3.57 2.67 2.00 2.86 70.00 2.82 4.55 0.00 1.96 4.48 2.38 5.56 4.26 3.51 16.13 0.00 6.25 4.17 0.00 0.00 0.00 0.00 5.66 4.00 4.44 2.56 2.30 4.17 0.00 0.00 0.00 0.00 0.00 3.55 0.00 2.86 2.78 4.44 3.85 3.92 0.00 3.67 2.20 0.00 7.69 0.00 3.57 NA 1.56 0.00 0.00 7.58 K intron_retention cenB1A chr3R + chr3R_18947355_18947549 chr3R_18947354_18947355;chr3R_18947549_18947550 chr3R_18947059_18947354;chr3R_18947550_18947666 31.58 23.08 39.29 22.22 29.17 47.06 43.33 26.53 37.88 NA 43.75 32.65 56.25 33.33 38.24 28.57 24.14 41.67 37.04 23.40 26.09 52.00 29.55 16.13 31.58 44.00 26.19 13.04 37.04 18.52 33.33 45.45 50.00 19.15 22.22 NA 33.33 30.00 34.48 41.38 25.00 32.79 25.71 28.57 50.00 36.84 31.58 50.00 33.33 28.12 24.24 25.00 29.41 NA 27.27 28.57 16.13 45.00 K intron_retention betaCop chrX - chrX_18276577_18276635 chrX_18276576_18276577;chrX_18276635_18276636 chrX_18276415_18276576;chrX_18276636_18277291 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.32 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pi3K59F,apt chr2R + chr2R_19449103_19449157 chr2R_19449102_19449103;chr2R_19449157_19449158 chr2R_19448921_19449102;chr2R_19449158_19450050 0.00 0.00 NA NA NA NA 15.79 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 20.00 NA 0.00 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA K alternative_donor shi,RI_chrX_15786633_15786860,RE_chrX_15793108_15795563 chrX + chrX_15786474_15786860;chrX_15786603_15786860;chrX_15786285_15786860;chrX_15786200_15786860;chrX_15786394_15786860 chrX_15786615_15786860 chrX_15786861_15786960;chrX_15786192_15786199 0.00 0.00 5.26 3.45 0.00 9.09 2.86 7.14 2.04 0.00 0.00 6.25 0.00 4.55 0.00 7.50 0.00 0.00 3.23 2.56 0.00 10.00 0.00 0.00 0.00 16.67 0.00 0.00 0.00 0.00 3.33 0.00 5.26 5.77 0.00 0.00 0.00 0.00 0.00 3.45 0.00 2.50 5.56 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG2258,I_chrX_7993650_7995126,I_chrX_7994188_7995101 chrX - chrX_7993324_7993383 chrX_7993323_7993324;chrX_7993383_7993384 chrX_7993174_7993323;chrX_7993384_7993649 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 5.56 NA NA NA NA NA NA NA NA NA K jcn_only_AD iPLA2-VIA chr3L - chr3L_9856717_9856876;chr3L_9856717_9857292 chr3L_9856717_9857106 chr3L_9856421_9856716;chr3L_9857293_9857459 0.00 1.82 0.00 3.10 0.00 0.00 0.00 0.00 0.68 NA 0.00 2.42 0.00 0.00 4.11 0.00 0.00 0.00 0.00 1.43 0.00 0.00 1.61 1.33 0.00 0.00 1.64 1.64 1.25 3.39 0.00 0.00 0.00 0.00 1.23 1.33 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 2.27 0.83 0.00 0.00 1.41 0.00 0.00 0.00 2.04 0.00 2.44 K alternative_donor ytr,eIF6,RI_chr2R_19738391_19738783 chr2R - chr2R_19736323_19738093 chr2R_19736323_19738079 chr2R_19734681_19736322;chr2R_19738094_19738171 4.17 4.17 9.09 3.81 3.85 4.12 9.84 6.85 4.67 3.64 5.88 4.56 2.63 6.00 14.29 11.90 2.99 2.27 6.00 4.46 3.70 4.93 2.61 4.28 3.52 5.88 5.67 5.42 3.73 5.45 4.76 4.00 4.29 3.94 4.62 3.20 2.81 3.41 3.69 5.46 2.56 4.26 2.82 5.52 3.39 3.65 4.47 5.96 3.04 4.17 6.63 3.70 4.15 3.20 4.08 3.41 5.67 5.44 K intron_retention CG9947,eIF-2alpha chrX - chrX_16334959_16335174 chrX_16334958_16334959;chrX_16335174_16335175 chrX_16334690_16334958;chrX_16335175_16335305 0.34 0.61 0.00 0.52 0.00 0.00 1.20 0.46 0.40 0.56 0.00 0.30 0.00 0.00 0.55 0.31 0.00 0.71 0.00 0.77 0.00 0.34 0.00 0.52 0.00 0.00 0.00 0.62 0.59 0.00 0.51 0.88 0.39 0.00 0.68 0.86 0.46 0.65 0.88 0.75 0.29 0.29 0.00 0.71 0.68 0.72 0.34 0.35 0.47 0.00 0.00 0.00 0.00 0.00 0.75 0.24 0.32 0.35 K intron_retention CG30187,F_chr2R_18805721_18805778,I_chr2R_18820842_18820922 chr2R - chr2R_18805932_18805988 chr2R_18805931_18805932;chr2R_18805988_18805989 chr2R_18805783_18805931;chr2R_18805989_18806034 0.00 0.00 0.00 1.80 0.00 0.00 0.00 1.57 1.25 0.00 0.00 1.48 0.00 1.79 0.00 0.87 0.00 2.60 0.00 0.86 0.00 2.20 0.00 0.00 0.00 0.00 1.69 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD exo84 chr3R - chr3R_21877640_21877695 chr3R_21877640_21877692 chr3R_21877309_21877639;chr3R_21877696_21877851 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 K intron_retention I_chr2L_2856176_2856244,RI_chr2L_2856673_2856772,CG2991 chr2L + chr2L_2857577_2859624 chr2L_2857576_2857577;chr2L_2859624_2859625 chr2L_2857219_2857576;chr2L_2859625_2859645 12.90 NA 12.50 35.71 NA NA 31.25 12.90 12.50 NA NA 10.53 NA NA NA 18.75 NA 7.14 NA 0.00 NA NA 16.67 NA NA NA 33.33 NA NA NA 20.00 NA NA 15.38 NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA 9.09 NA NA NA NA NA NA NA NA NA K intron_retention CG14741,noncoding_16224 chr3R - chr3R_7908604_7915959 chr3R_7908603_7908604;chr3R_7915959_7915960 chr3R_7908424_7908603;chr3R_7915960_7916316 3.95 2.70 7.48 7.63 10.71 5.21 13.79 9.63 11.68 0.00 9.09 7.93 11.48 13.58 12.99 8.82 18.00 10.14 17.39 5.17 5.41 3.41 1.45 1.85 3.03 4.76 3.57 11.76 2.27 1.41 10.14 0.00 1.02 9.09 2.30 4.21 1.72 2.44 1.77 2.73 0.00 9.05 7.25 3.49 0.00 1.72 0.00 3.17 6.90 0.00 5.69 3.95 0.00 0.00 11.96 0.00 0.00 0.00 K intron_retention RI_chr3L_20370940_20371530,I_chr3L_20374844_20374891,fbl chr3L + chr3L_20377959_20381768 chr3L_20377958_20377959;chr3L_20381768_20381769 chr3L_20377531_20377958;chr3L_20381769_20381947 1.37 2.78 0.00 25.81 0.00 11.11 0.00 1.85 2.38 0.00 10.00 7.89 0.00 0.00 0.00 9.09 0.00 8.00 4.35 7.46 8.70 8.20 5.68 0.00 0.00 0.00 8.33 7.89 0.00 10.00 4.55 0.00 1.30 2.22 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 2.99 0.00 5.41 2.17 1.72 7.32 5.45 0.00 5.88 0.00 3.70 0.00 0.00 7.50 0.00 K intron_retention CG1021,RI_chr3R_2217711_2231463,I_chr3R_2218682_2231463,I_chr3R_2219634_2231390,I_chr3R_2231383_2231463 chr3R - chr3R_2215656_2215732 chr3R_2215655_2215656;chr3R_2215732_2215733 chr3R_2215480_2215655;chr3R_2215733_2215846 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 1.82 2.56 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10069,I_chr2R_17171765_17171886 chr2R + chr2R_17172304_17172359 chr2R_17172303_17172304;chr2R_17172359_17172360 chr2R_17172155_17172303;chr2R_17172360_17173174 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 K intron_retention RhoGAP18B chrX - chrX_19045993_19047060 chrX_19045992_19045993;chrX_19047060_19047061 chrX_19044844_19045992;chrX_19047061_19047301 26.85 17.39 14.71 31.21 20.00 26.67 30.00 26.85 21.05 36.36 19.57 25.60 25.93 26.56 20.83 29.06 16.36 17.39 18.84 27.59 12.24 41.24 25.56 33.87 33.33 22.50 36.67 41.67 32.73 18.33 32.35 33.33 45.24 25.00 33.90 26.92 18.84 26.19 18.67 22.52 48.84 26.51 16.39 21.57 50.00 42.86 28.21 29.85 25.18 44.00 18.60 28.95 45.24 43.33 25.00 36.62 53.45 47.76 K intron_retention egl chr2R - chr2R_19623312_19623376 chr2R_19623311_19623312;chr2R_19623376_19623377 chr2R_19622574_19623311;chr2R_19623377_19623465 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Bruce chr3R - chr3R_6148103_6148168 chr3R_6148106_6148168 chr3R_6148169_6148437;chr3R_6147930_6148102 93.98 86.79 91.55 94.55 87.72 92.31 92.59 91.04 95.24 91.43 97.14 95.14 88.16 92.31 97.10 91.89 96.34 94.52 94.87 94.74 95.38 92.52 93.44 94.87 98.21 93.59 96.61 97.44 92.59 93.51 88.89 NA 89.33 91.79 96.08 100.00 89.43 94.23 94.12 98.80 NA 93.98 91.94 92.59 NA 95.45 96.00 92.86 94.44 95.00 93.33 96.00 90.00 NA 96.30 92.31 NA NA K alternative_acceptor Nedd4,I_chr3L_17534127_17534409,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17534127_17534409 chr3L_17534127_17534400 chr3L_17534027_17534126;chr3L_17534410_17534503 97.56 100.00 97.62 98.85 100.00 100.00 96.92 98.81 100.00 97.50 96.43 98.75 97.06 97.73 97.44 96.61 97.06 97.78 97.56 99.11 100.00 100.00 98.63 98.31 97.56 97.56 98.68 96.67 92.73 98.11 97.67 96.55 97.94 95.59 97.50 91.11 97.59 97.87 97.56 98.20 91.18 95.60 100.00 98.39 96.30 100.00 96.00 95.45 98.75 94.29 97.22 100.00 95.24 96.88 92.00 92.11 91.18 100.00 K alternative_donor CG5174,F_chr2R_14309059_14311473 chr2R + chr2R_14312540_14313468 chr2R_14312582_14313468 chr2R_14313469_14313709;chr2R_14312377_14312539 100.00 NA NA 92.31 NA NA 88.89 100.00 100.00 NA NA 100.00 NA 100.00 85.71 100.00 85.71 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA 88.89 NA NA NA K intron_retention CG13124,I_chr2L_9905292_9905551,I_chr2L_9905292_9905677,RI_chr2L_9907784_9908405,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9905084_9905137 chr2L_9905083_9905084;chr2L_9905137_9905138 chr2L_9904827_9905083;chr2L_9905138_9905241 81.53 NA NA NA NA NA NA NA NA NA NA 81.25 NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA 81.82 NA NA NA NA NA NA 83.33 57.89 NA NA NA NA 80.00 NA 88.89 NA NA NA NA NA NA NA NA NA 80.00 K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27761114_27762991,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27707594_27801169 chr3R_27707594_27771343;chr3R_27771381_27784756;chr3R_27784850_27795477;chr3R_27795508_27801169 chr3R_27771344_27771380;chr3R_27784757_27784849;chr3R_27795478_27795507 chr3R_27707494_27707593;chr3R_27801170_27801219 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 80.00 100.00 100.00 100.00 NA 100.00 100.00 88.89 100.00 85.71 100.00 100.00 100.00 80.00 100.00 NA NA 100.00 100.00 NA 83.33 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 88.89 100.00 85.71 NA 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 83.33 K intron_retention Myo61F,mtacp1,I_chr3L_1330291_1331279,RI_chr3L_1330929_1331041,l(3)02640 chr3L + chr3L_1331171_1331279 chr3L_1331170_1331171;chr3L_1331279_1331280 chr3L_1331042_1331170;chr3L_1331280_1331379 1.88 2.99 1.71 1.32 1.22 2.36 2.60 1.31 1.40 0.75 4.74 1.99 2.40 1.79 1.28 2.53 1.22 1.85 2.10 2.67 1.79 0.00 2.26 1.03 5.67 3.72 3.45 5.26 2.27 0.00 2.05 4.65 2.08 2.56 4.73 2.70 1.88 1.57 1.57 2.95 2.19 1.48 1.39 0.00 1.73 1.25 0.95 1.57 1.94 1.95 2.51 2.37 1.53 1.48 1.57 1.63 1.89 0.94 K cassette CG12753,I_chr3R_12265080_12265169,Pak3 chr3R - chr3R_12264896_12265334 chr3R_12264896_12264962;chr3R_12265080_12265334 chr3R_12264963_12265079 chr3R_12264434_12264895;chr3R_12265335_12266125 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG34150,F_chr3R_20640350_20640439 chr3R + chr3R_20640215_20640274 chr3R_20640214_20640215;chr3R_20640274_20640275 chr3R_20640071_20640214;chr3R_20640275_20640349 0.00 0.00 0.00 0.00 4.35 0.00 6.00 0.00 4.44 4.00 0.00 3.33 0.00 2.63 0.00 3.28 0.00 0.00 0.00 6.06 0.00 NA 6.67 0.00 0.00 6.38 5.71 7.69 0.00 0.00 0.00 6.12 4.88 0.00 0.00 20.00 0.00 0.00 6.67 0.00 4.44 2.86 0.00 0.00 3.77 3.03 4.44 2.17 2.74 2.00 0.00 5.26 0.00 5.00 0.00 0.00 0.00 2.08 K mutually_exclusive par-1,EFI_chr2R_15361473_15362032,RI_chr2R_15361473_15362035,I_chr2R_15361473_15366246,I_chr2R_15362147_15365120,F_chr2R_15362147_15365138,I_chr2R_15362147_15365165,RI_chr2R_15363358_15365120,I_chr2R_15363358_15366246,I_chr2R_15365210_15370456 chr2R + chr2R_15361473_15366246,chr2R_15366371_15370456 chr2R_15361473_15365165,chr2R_15365210_15370456 chr2R_15366247_15366370 chr2R_15365166_15365209 chr2R_15361373_15361472;chr2R_15370457_15370556 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG33156 chr2R - chr2R_9437422_9439612 chr2R_9437422_9439456 chr2R_9437104_9437421;chr2R_9439613_9439932 89.44 88.89 85.71 88.89 100.00 75.00 88.89 100.00 93.75 40.00 100.00 93.33 NA 83.33 100.00 90.00 75.00 87.50 87.50 94.74 100.00 100.00 94.12 86.67 85.71 100.00 100.00 60.00 90.91 90.91 100.00 87.50 90.91 90.91 90.00 90.00 87.50 71.43 80.00 48.15 77.78 75.00 87.50 66.67 100.00 92.31 76.92 93.33 90.91 92.86 91.67 100.00 66.67 80.00 90.00 87.50 66.67 69.23 K intron_retention Pect,I_chr2L_13207997_13208109,E_chr2L_13208285_13210076 chr2L + chr2L_13209600_13209659 chr2L_13209599_13209600;chr2L_13209659_13209660 chr2L_13209502_13209599;chr2L_13209660_13209845 0.00 0.00 0.89 0.85 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.67 0.68 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 2.38 1.35 0.00 0.00 0.00 0.00 0.00 0.34 0.00 1.49 0.00 0.00 0.00 0.76 0.50 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 K alternative_acceptor Hr78,I_chr3L_21490089_21490390,CG33214 chr3L - chr3L_21490008_21490390;chr3L_21490089_21490390;chr3L_21489978_21490390 chr3L_21490023_21490390 chr3L_21490391_21490490;chr3L_21489920_21489977 18.75 NA NA 20.00 NA 28.57 9.09 18.75 21.43 NA 33.33 23.08 18.18 18.18 28.57 13.33 NA 0.00 10.00 36.36 NA NA 10.00 25.00 NA 28.57 NA NA NA NA NA NA 25.00 16.67 NA NA NA NA NA 0.00 NA 20.00 20.00 16.67 NA NA NA NA 15.38 NA 16.67 16.67 NA NA 23.08 NA NA NA K intron_retention CG34261 chr3L + chr3L_21190346_21190404 chr3L_21190345_21190346;chr3L_21190404_21190405 chr3L_21190187_21190345;chr3L_21190405_21190590 7.69 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention I_chrX_3345099_3416710,CG10802,CG10803,I_chrX_3380218_3380345 chrX + chrX_3377117_3377178 chrX_3377116_3377117;chrX_3377178_3377179 chrX_3376917_3377116;chrX_3377179_3377945 13.33 NA 7.14 23.81 15.38 5.56 9.46 6.82 14.00 14.29 2.86 9.26 23.08 10.00 9.09 10.00 18.75 0.00 4.76 20.37 3.85 14.00 14.71 20.83 19.35 6.67 27.27 25.00 26.79 16.33 18.75 13.64 7.38 13.33 11.36 11.11 13.64 12.00 4.88 5.22 14.93 10.00 15.79 9.80 11.48 14.06 13.33 9.68 14.29 7.32 17.86 18.18 NA 21.05 7.14 16.67 16.67 7.27 K jcn_only_AA B52,E_chr3R_9488770_9491174 chr3R + chr3R_9491971_9492016;chr3R_9491971_9492140 chr3R_9491971_9492077 chr3R_9491806_9491970;chr3R_9492141_9492586 0.00 0.14 0.00 0.00 0.00 0.00 1.08 0.34 0.49 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.75 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.19 0.58 0.28 0.16 0.22 0.00 0.00 0.00 0.00 0.00 1.21 0.31 0.00 0.44 0.14 0.13 0.13 0.00 0.00 0.00 0.00 0.00 0.16 0.00 K alternative_donor sgg,I_chrX_2529065_2563945,I_chrX_2536127_2563666,I_chrX_2552903_2553180,I_chrX_2563342_2563666,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2540905_2553180 chrX_2552903_2553180 chrX_2553181_2553226;chrX_2540871_2540904 95.83 94.74 100.00 94.44 95.00 100.00 97.30 93.48 98.51 100.00 100.00 93.88 95.83 100.00 96.55 97.87 96.00 100.00 96.88 100.00 93.33 93.33 89.47 81.25 92.86 100.00 95.45 91.67 100.00 93.75 96.00 100.00 94.74 97.83 94.12 100.00 100.00 90.00 92.31 96.30 100.00 100.00 100.00 95.83 66.67 88.89 83.33 95.83 92.31 83.33 95.00 92.31 100.00 80.00 96.43 100.00 87.50 92.31 N multi_cassette Dscam,F_chr2R_3219886_3225754,I_chr2R_3219886_3226532,FI_chr2R_3219886_3227659,F_chr2R_3219886_3228449,F_chr2R_3219886_3228832,F_chr2R_3226043_3235353,F_chr2R_3227948_3235353,F_chr2R_3228738_3235353,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3219886_3235353 chr2R_3219886_3232565;chr2R_3232857_3232989;chr2R_3233281_3235353 chr2R_3232566_3232856;chr2R_3232990_3233280 chr2R_3219786_3219885;chr2R_3235354_3235453 100.00 22.22 22.22 12.50 NA NA 27.27 13.33 100.00 NA NA 100.00 16.67 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 6.25 100.00 NA NA NA 100.00 NA 18.18 NA 100.00 NA 11.11 100.00 NA NA 100.00 NA NA 20.00 NA 100.00 NA NA NA NA NA NA 33.33 NA 14.29 NA NA NA 27.27 NA NA NA K alternative_acceptor CG5989 chr3L - chr3L_8595944_8596014 chr3L_8595954_8596014 chr3L_8596015_8596083;chr3L_8595878_8595943 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 96.55 100.00 100.00 K alternative_donor aPKC,RI_chr2R_10849347_10850321,RI_chr2R_10849347_10850391 chr2R - chr2R_10849347_10850391 chr2R_10849347_10850199 chr2R_10849247_10849346;chr2R_10850392_10850421 100.00 100.00 100.00 97.87 100.00 100.00 100.00 97.83 98.04 100.00 100.00 97.37 92.59 100.00 95.65 98.28 100.00 100.00 96.43 96.67 100.00 100.00 95.65 93.33 93.33 100.00 100.00 100.00 95.24 94.12 100.00 100.00 100.00 97.96 100.00 100.00 91.67 92.86 90.00 100.00 100.00 100.00 100.00 94.74 100.00 95.65 87.50 97.44 97.96 93.33 96.00 100.00 100.00 83.33 96.15 91.67 100.00 100.00 K intron_retention CG4699 chr3R + chr3R_11619776_11620550 chr3R_11619775_11619776;chr3R_11620550_11620551 chr3R_11619757_11619775;chr3R_11620551_11621301 20.00 NA NA NA NA NA 26.67 NA 33.33 NA NA NA NA NA NA NA NA NA NA 31.58 NA 47.06 16.67 NA NA NA NA NA NA NA NA NA 14.29 18.75 NA NA NA NA NA 20.00 NA 20.00 NA NA NA 12.50 NA 12.50 25.00 NA NA NA NA NA NA NA NA NA K alternative_donor shep,I_chr3L_5157070_5160067,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5157076_5160067 chr3L_5157076_5160034 chr3L_5156934_5157075;chr3L_5160068_5160159 97.47 97.87 100.00 95.56 93.10 96.49 95.56 97.85 96.10 97.44 98.28 97.75 98.31 98.25 96.88 96.30 97.92 98.15 93.24 98.85 92.59 98.41 97.06 98.04 97.30 96.77 98.31 100.00 97.50 100.00 98.41 100.00 96.00 98.75 97.22 97.14 98.41 100.00 97.96 94.03 95.24 97.09 100.00 97.37 95.83 89.66 100.00 NA 97.32 100.00 95.16 97.67 95.83 100.00 100.00 96.43 97.14 88.89 K intron_retention CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20824631_20825271 chr2L_20824630_20824631;chr2L_20825271_20825272 chr2L_20824625_20824630;chr2L_20825272_20825366 56.39 87.50 28.57 73.33 NA 60.00 67.86 56.52 69.57 NA 46.15 47.06 70.00 NA NA 61.11 45.45 NA NA 51.85 NA 71.43 NA 75.00 87.50 NA 100.00 46.15 37.50 33.33 41.67 23.53 23.08 56.25 NA 72.73 NA NA NA 23.21 NA 75.00 80.00 42.86 23.08 35.48 NA 11.63 63.16 100.00 75.00 NA NA NA 40.00 NA 69.23 13.95 K cassette vap,RI_chrX_15897976_15899352,I_chrX_15897976_15899654,I_chrX_15898011_15899654,I_chrX_15898427_15899017,RI_chrX_15898427_15899654,RI_chrX_15899237_15899352,I_chrX_15899237_15899654 chrX - chrX_15898120_15899352;chrX_15898120_15899654 chrX_15898120_15898360;chrX_15898427_15899654,chrX_15898427_15899352 chrX_15898361_15898426 chrX_15897748_15898119;chrX_15899655_15899705 38.46 50.00 40.62 60.00 38.46 44.44 31.71 72.97 40.38 11.76 90.91 51.52 35.00 38.46 27.78 41.67 44.00 22.73 41.18 54.55 66.67 29.41 47.83 23.08 30.77 36.00 33.33 NA 44.44 42.86 34.78 NA 33.33 51.35 40.00 43.75 NA NA 31.25 15.38 25.00 36.36 37.50 46.67 25.00 36.36 NA 34.48 53.66 38.46 41.18 38.46 NA NA 36.67 NA 46.15 47.37 K intron_retention DMAP1,I_chr2R_16531774_16531833,I_chr2R_16532870_16532932 chr2R + chr2R_16533088_16533157 chr2R_16533087_16533088;chr2R_16533157_16533158 chr2R_16532933_16533087;chr2R_16533158_16533368 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.62 5.88 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette CG31531,I_chr3R_523978_525892,I_chr3R_523978_526879 chr3R + chr3R_523978_526879 chr3R_523978_525438;chr3R_525582_525892;chr3R_526050_526879 chr3R_525439_525581;chr3R_525893_526049 chr3R_523878_523977;chr3R_526880_526979 100.00 100.00 100.00 87.88 100.00 100.00 100.00 100.00 100.00 95.83 100.00 97.50 100.00 96.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 95.45 97.62 100.00 95.83 100.00 100.00 100.00 80.65 97.44 96.00 100.00 98.36 97.44 96.43 96.77 100.00 100.00 100.00 97.67 96.30 97.96 100.00 100.00 96.15 97.06 100.00 95.65 97.22 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 97.73 K intron_retention mrj,RI_chr2R_12093733_12108627,I_chr2R_12108697_12109174 chr2R - chr2R_12092260_12092329 chr2R_12092259_12092260;chr2R_12092329_12092330 chr2R_12091947_12092259;chr2R_12092330_12092536 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor RluA-2,I_chr2L_10480906_10481097 chr2L + chr2L_10481571_10481621;chr2L_10481571_10481629 chr2L_10481571_10481646 chr2L_10481509_10481570;chr2L_10481647_10481707 37.50 NA 44.44 30.00 NA 28.57 26.32 50.00 20.00 NA 44.44 35.71 44.44 12.50 42.86 62.50 40.00 33.33 22.22 40.74 25.00 63.64 21.43 55.56 44.44 30.77 25.00 NA 33.33 53.85 61.11 16.67 46.15 36.84 45.45 75.00 50.00 42.86 27.27 35.00 50.00 33.33 16.67 37.50 37.50 44.44 30.00 36.84 42.86 41.67 28.57 20.00 50.00 45.45 30.77 33.33 40.00 58.33 K alternative_acceptor I_chr3L_207277_208117,thoc7,pyx chr3L - chr3L_212557_212617 chr3L_212560_212617 chr3L_212618_212687;chr3L_212445_212556 88.89 90.00 90.91 86.67 87.50 NA 93.75 92.31 88.00 85.71 100.00 100.00 80.00 100.00 73.33 92.31 NA 100.00 NA 85.29 90.91 90.00 100.00 NA NA NA 88.89 88.89 87.50 NA NA 92.86 75.00 78.57 NA NA 87.50 100.00 90.00 84.21 90.91 91.67 NA 87.50 88.89 83.33 NA 81.82 84.62 90.91 NA NA 88.89 NA 100.00 80.00 84.62 80.00 K alternative_acceptor Amun,I_chrX_11607839_11608272,I_chrX_11607842_11608105,I_chrX_11607842_11608125,RI_chrX_11607842_11608272 chrX - chrX_11607839_11608507 chrX_11607842_11608507 chrX_11608508_11608588;chrX_11607788_11607838 55.56 87.50 36.36 61.11 60.00 NA 64.29 73.68 50.00 NA 50.00 65.00 NA NA 56.25 80.00 50.00 NA NA 61.90 NA 71.43 47.37 60.00 NA 50.00 53.33 NA 47.06 50.00 45.45 55.56 55.00 52.38 NA 53.33 42.86 60.00 53.33 61.54 29.41 50.00 60.00 55.56 53.33 47.62 72.73 67.86 53.33 58.33 NA 50.00 NA 57.14 64.29 55.56 66.67 65.22 K intron_retention Cg25C,I_chr2L_5029811_5029873 chr2L + chr2L_5029747_5030136 chr2L_5029746_5029747;chr2L_5030136_5030137 chr2L_5029711_5029746;chr2L_5030137_5030237 60.00 NA 60.00 43.75 NA 87.50 47.37 58.82 44.00 81.82 75.00 76.67 61.54 63.64 NA 64.71 NA 60.00 56.25 65.71 NA 69.23 54.55 75.00 58.33 NA 45.45 NA 45.45 NA 75.00 NA 60.00 63.64 NA 44.44 43.48 61.11 66.67 65.52 66.67 57.58 NA 55.56 NA 65.38 NA 59.38 56.25 36.36 72.73 47.06 64.71 NA 91.67 63.64 46.15 38.10 K intron_retention Myo61F,mtacp1,I_chr3L_1330291_1330865,I_chr3L_1330291_1331279,RI_chr3L_1330929_1331041,l(3)02640 chr3L + chr3L_1330929_1331041 chr3L_1330928_1330929;chr3L_1331041_1331042 chr3L_1330866_1330928;chr3L_1331042_1331054 99.32 99.18 97.94 97.58 99.03 100.00 98.73 99.31 100.00 98.85 100.00 99.44 100.00 100.00 97.37 100.00 100.00 98.84 100.00 99.56 98.53 97.73 99.15 98.47 100.00 98.86 99.22 97.78 100.00 100.00 100.00 98.94 100.00 100.00 100.00 100.00 99.41 99.10 98.75 99.43 98.96 100.00 98.33 100.00 99.33 99.32 98.17 100.00 99.33 99.03 99.12 100.00 98.53 98.90 99.03 100.00 99.06 100.00 K intron_retention Chro,I_chr3L_22870968_22871036,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22871119_22871250 chr3L_22871118_22871119;chr3L_22871250_22871251 chr3L_22871037_22871118;chr3L_22871251_22871262 54.42 63.64 46.67 65.00 NA NA 88.89 61.11 61.90 NA NA 58.82 45.45 46.15 30.77 52.63 NA NA 56.25 50.00 NA 66.67 50.00 46.15 NA NA 73.33 NA NA 77.78 60.00 NA 45.45 52.63 NA NA 47.37 NA 44.44 57.89 NA 55.00 NA 70.00 NA 53.85 NA NA 57.14 40.00 76.92 42.86 NA 46.15 43.75 NA NA 70.00 K alternative_donor Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19546876_19547916;chr2R_19547223_19547916 chr2R_19546851_19547916 chr2R_19547917_19547942;chr2R_19546810_19546850 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 1.37 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG8408 chrX - chrX_17521274_17521461 chrX_17521273_17521274;chrX_17521461_17521462 chrX_17520973_17521273;chrX_17521462_17521500 2.27 2.35 4.26 3.70 3.90 2.60 2.94 6.14 3.66 3.23 2.82 2.04 0.00 4.00 2.17 3.70 0.00 0.00 2.17 1.82 0.00 6.45 0.79 3.45 2.78 3.28 0.00 2.94 6.90 0.00 2.22 0.00 2.00 1.49 1.56 4.48 2.04 1.20 2.27 2.13 6.90 2.87 3.51 4.29 0.00 0.00 5.71 11.11 3.68 2.22 4.10 2.22 0.00 0.00 4.76 1.35 0.00 0.00 K jcn_only_AD EloA chr3R + chr3R_19077508_19077970 chr3R_19077680_19077970 chr3R_19077971_19078558;chr3R_19077294_19077507 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 100.00 98.33 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention PDCD-5 chr3L - chr3L_16224517_16224573 chr3L_16224516_16224517;chr3L_16224573_16224574 chr3L_16224436_16224516;chr3L_16224574_16224642 3.31 3.25 3.21 6.10 4.00 2.48 3.27 3.49 4.41 1.20 1.01 4.82 0.00 3.81 5.62 6.09 4.76 1.90 3.50 2.80 0.00 3.03 3.31 2.26 4.35 6.56 7.89 11.11 18.37 0.00 5.66 2.34 3.82 2.96 5.00 9.52 4.05 2.36 2.67 1.96 6.11 2.34 4.30 2.90 4.69 3.12 2.61 3.31 3.17 3.79 4.26 4.88 1.79 4.10 2.01 2.50 3.91 2.34 K intron_retention Clic chrX - chrX_13708920_13710814 chrX_13708919_13708920;chrX_13710814_13710815 chrX_13708410_13708919;chrX_13710815_13710879 58.58 NA NA 75.00 NA 42.86 69.23 59.09 61.11 NA NA 52.63 70.00 61.54 54.55 68.42 54.55 35.71 50.00 81.82 NA 32.00 NA NA NA 50.00 58.82 75.00 40.00 NA 57.14 NA 66.67 71.43 38.46 NA NA NA NA 46.67 58.33 61.90 NA NA NA NA NA 52.94 61.11 NA 53.85 NA NA NA NA NA NA 60.00 K jcn_only_AA gp210,I_chr2R_1653709_1654789,I_chr2R_1655359_1655422 chr2R + chr2R_1655359_1655422 chr2R_1655359_1655418 chr2R_1655259_1655358;chr2R_1655423_1655522 99.29 100.00 100.00 99.09 98.39 98.68 100.00 98.72 100.00 100.00 100.00 100.00 100.00 98.80 100.00 100.00 96.83 98.70 99.17 98.90 100.00 100.00 100.00 98.46 100.00 96.61 98.40 100.00 100.00 100.00 94.00 100.00 99.09 100.00 100.00 97.44 100.00 100.00 98.89 98.57 98.15 98.91 98.86 99.07 100.00 99.28 98.72 99.05 98.44 99.19 99.29 100.00 100.00 100.00 100.00 95.45 100.00 97.92 K jcn_only_AD gw,RI_chr4_679135_679703,I_chr4_679135_680299,RI_chr4_679135_680693,I_chr4_679135_681047,I_chr4_679135_681671 chr4 - chr4_679135_681054;chr4_679135_681206 chr4_679135_681128 chr4_679035_679134;chr4_681207_681208 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 1.64 0.00 0.00 0.00 1.22 3.23 NA 2.13 0.00 NA NA 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 K intron_retention CG11897 chr3R + chr3R_24986130_24986192 chr3R_24986129_24986130;chr3R_24986192_24986193 chr3R_24985899_24986129;chr3R_24986193_24988178 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 7.14 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K jcn_only_AA CG6623,I_chr3R_11040813_11040964,I_chr3R_11042070_11042139 chr3R - chr3R_11042070_11042139 chr3R_11042081_11042139 chr3R_11042140_11042239;chr3R_11041970_11042069 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 98.08 NA 100.00 97.30 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 NA 97.22 100.00 NA NA 93.94 97.14 NA 100.00 100.00 86.36 100.00 100.00 100.00 100.00 92.59 95.00 95.65 96.88 98.25 NA 100.00 100.00 97.06 100.00 100.00 95.45 NA 100.00 95.83 94.12 NA NA 100.00 100.00 100.00 97.67 100.00 K multi_cassette R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8088454_8105691 chr2L_8088454_8088609;chr2L_8088716_8089393;chr2L_8089737_8105691 chr2L_8088610_8088715;chr2L_8089394_8089736 chr2L_8088448_8088453;chr2L_8105692_8105782 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 95.45 100.00 100.00 93.33 91.67 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 83.33 85.71 93.33 100.00 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 K intron_retention shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9785143,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9782475_9786954 chr2R_9782474_9782475;chr2R_9786954_9786955 chr2R_9782344_9782474;chr2R_9786955_9787019 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 2.86 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K intron_retention CG33145,I_chr2R_7872603_7872720 chr2R - chr2R_7869262_7869328 chr2R_7869261_7869262;chr2R_7869328_7869329 chr2R_7868095_7869261;chr2R_7869329_7869876 89.47 87.50 85.19 93.75 95.83 95.65 82.93 87.04 86.96 95.65 94.12 88.46 89.47 86.67 92.86 88.57 95.83 92.31 96.15 94.64 93.10 96.00 91.11 83.78 86.36 87.10 89.47 95.00 94.12 88.00 100.00 86.67 88.89 83.93 86.67 94.12 96.88 95.65 86.67 89.36 88.89 92.86 96.30 92.31 85.71 89.29 93.75 82.35 88.00 91.67 89.47 80.95 100.00 84.21 93.33 95.00 81.82 90.91 K intron_retention psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6456884_6457311 chr2R_6456883_6456884;chr2R_6457311_6457312 chr2R_6456873_6456883;chr2R_6457312_6457647 90.00 NA NA 90.00 NA NA NA 100.00 93.75 NA NA 84.62 NA NA NA 92.31 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA 78.57 NA NA NA NA NA NA NA NA NA K intron_retention I_chr2L_4834257_4835246,CG15626,I_chr2L_4837691_4837844,I_chr2L_4837780_4837844 chr2L - chr2L_4837534_4837601 chr2L_4837533_4837534;chr2L_4837601_4837602 chr2L_4837235_4837533;chr2L_4837602_4837639 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.67 5.19 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor msn,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2564696_2565600 chr3L_2564756_2565600 chr3L_2565601_2565613;chr3L_2564397_2564695 70.00 58.49 72.00 83.33 76.47 53.85 86.49 81.40 73.85 53.33 75.00 96.70 70.83 80.00 70.83 93.10 58.82 85.00 72.22 67.06 75.00 21.85 46.73 49.41 48.08 80.95 50.00 36.59 72.09 77.78 78.12 70.00 59.62 70.21 52.78 81.63 52.88 59.68 53.09 57.69 68.42 72.84 75.00 62.71 72.73 60.00 34.38 76.36 72.00 36.84 43.75 60.00 65.38 33.33 70.83 56.25 50.00 79.17 K intron_retention Atpalpha,I_chr3R_16788018_16789830,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16786548_16789446 chr3R_16786547_16786548;chr3R_16789446_16789447 chr3R_16786504_16786547;chr3R_16789447_16789578 4.76 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA 28.57 NA NA NA NA NA 0.00 12.50 NA NA NA NA NA NA NA NA 0.00 K intron_retention 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5987603_5991760,I_chr2R_5988662_5991760,I_chr2R_5988666_5991760,I_chr2R_5988919_5991760,I_chr2R_5988931_5991760,I_chr2R_5990647_5991760,I_chr2R_5991249_5991760,I_chr2R_5991689_5991760,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5987244_5991760 chr2R_5987243_5987244;chr2R_5991760_5991761 chr2R_5987238_5987243;chr2R_5991761_5991860 35.55 38.64 35.59 37.33 25.60 37.82 50.35 37.56 33.55 62.16 37.04 33.78 29.11 40.61 35.98 31.35 33.01 27.69 34.85 32.52 36.22 32.00 37.80 30.34 40.00 41.81 39.29 27.78 34.88 36.11 31.47 32.00 42.25 35.55 50.00 54.17 21.55 36.51 35.21 30.16 41.77 33.93 36.79 24.32 32.14 38.78 28.17 38.03 35.76 28.05 48.21 30.30 20.83 50.00 31.94 33.72 28.42 41.46 K alternative_acceptor CLIP-190,I_chr2L_17385896_17394432,RI_chr2L_17386394_17394432,I_chr2L_17394493_17404060,I_chr2L_17401291_17404060,I_chr2L_17401582_17402303 chr2L + chr2L_17385896_17394432 chr2L_17385896_17394429 chr2L_17385796_17385895;chr2L_17394433_17394492 93.72 90.00 84.62 90.00 NA 100.00 100.00 90.00 87.50 NA NA 100.00 100.00 100.00 91.67 92.86 90.91 100.00 100.00 95.83 NA NA 92.86 84.62 100.00 100.00 94.12 NA 75.00 NA 100.00 NA 100.00 94.12 87.50 88.89 93.33 100.00 91.67 91.67 NA 90.00 NA NA NA 100.00 NA 87.50 100.00 80.00 94.74 NA NA NA 100.00 NA NA NA K intron_retention spz chr3R - chr3R_22892607_22892843 chr3R_22892606_22892607;chr3R_22892843_22892844 chr3R_22892566_22892606;chr3R_22892844_22892921 14.29 6.90 13.33 41.38 NA 11.76 47.37 12.00 13.21 NA 12.00 10.34 14.29 20.83 20.69 9.68 19.05 17.65 26.09 18.75 16.67 14.29 NA 11.76 NA 15.38 NA NA NA NA 9.09 20.00 2.70 10.81 NA 36.00 NA NA NA 15.22 27.59 18.87 26.09 10.71 10.53 13.79 14.29 6.06 13.64 13.33 20.00 14.29 11.76 NA 14.29 NA 17.65 11.43 K jcn_only_AA Upf1,I_chrX_11799010_11799076 chrX - chrX_11798981_11799067 chrX_11799010_11799067 chrX_11799068_11799388;chrX_11798910_11798980 62.75 62.16 72.34 78.95 53.33 64.10 60.42 65.12 64.37 47.83 56.41 66.67 68.75 83.72 60.98 69.05 75.00 56.41 43.75 55.00 70.00 77.27 62.50 75.00 NA 64.52 80.00 82.61 82.61 66.67 NA NA 73.33 63.01 46.15 14.71 47.83 64.86 60.00 52.08 NA 57.35 55.56 71.88 NA 59.38 86.21 51.92 53.49 NA 41.86 66.67 75.76 NA 53.85 52.38 47.37 62.00 K intron_retention RpS27A chr2L + chr2L_10410052_10410240 chr2L_10410051_10410052;chr2L_10410240_10410241 chr2L_10409711_10410051;chr2L_10410241_10410467 0.28 0.27 0.28 0.65 0.21 0.23 0.27 0.51 0.32 0.51 0.19 0.37 0.28 0.41 0.30 0.28 0.47 0.23 0.39 0.24 0.22 0.17 0.31 0.26 0.26 0.16 0.47 1.68 0.21 0.33 0.32 0.24 0.24 0.35 0.23 0.37 0.21 0.26 0.19 0.37 0.16 0.30 0.31 0.25 0.15 0.26 0.24 0.33 0.57 0.35 0.34 0.20 0.40 0.26 0.32 0.33 0.46 0.28 K intron_retention CG7200,RI_chr2L_18157864_18158015 chr2L - chr2L_18157864_18157917 chr2L_18157863_18157864;chr2L_18157917_18157918 chr2L_18157764_18157863;chr2L_18157918_18158624 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 8.33 NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA NA NA 0.00 0.00 NA 0.00 0.00 K intron_retention CG7497 chr3L + chr3L_17630402_17630542 chr3L_17630401_17630402;chr3L_17630542_17630543 chr3L_17630046_17630401;chr3L_17630543_17631008 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention I_chr3L_834336_834491,Gr61a chr3L + chr3L_842757_842813 chr3L_842756_842757;chr3L_842813_842814 chr3L_842718_842756;chr3L_842814_842823 18.82 NA NA 46.15 NA NA 33.33 NA 17.65 NA NA 14.29 NA NA NA NA NA NA NA 28.57 NA NA 12.50 21.43 NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA 0.00 25.00 NA 13.33 NA NA NA NA NA NA 15.00 6.67 NA NA NA NA NA 20.00 NA NA K intron_retention Vrp1,I_chr2R_17996482_17997091,I_chr2R_17996511_17997091,I_chr2R_17997529_17997692 chr2R - chr2R_17996286_17997091 chr2R_17996285_17996286;chr2R_17997091_17997092 chr2R_17995991_17996285;chr2R_17997092_17997191 2.99 1.57 5.71 0.00 5.88 3.39 14.81 7.89 3.38 0.87 11.90 3.10 0.00 0.00 0.00 0.00 0.00 18.18 3.64 2.48 10.81 10.88 1.17 2.99 3.19 6.45 6.21 5.00 0.77 3.53 8.93 6.76 2.86 3.26 1.55 2.13 2.54 3.20 2.39 2.79 5.13 2.98 4.44 3.42 0.56 1.83 1.89 1.37 3.48 2.29 3.23 3.28 1.11 1.23 1.30 3.00 0.00 2.46 N alternative_donor Not1,I_chr2R_5463624_5463682 chr2R - chr2R_5455592_5456522;chr2R_5455592_5456067 chr2R_5455592_5455673 chr2R_5455002_5455591;chr2R_5456523_5457661 2.22 1.49 2.27 4.17 1.95 2.84 3.16 2.52 1.95 7.02 2.61 2.84 6.59 2.91 2.11 1.97 1.83 3.33 3.28 3.93 2.67 3.58 1.27 1.50 1.71 1.85 4.59 4.62 2.04 1.54 2.89 1.79 1.68 2.22 2.42 1.58 0.90 1.10 1.03 1.73 2.68 1.59 2.72 1.57 3.25 2.25 2.01 2.78 2.27 2.14 2.24 2.01 0.78 2.65 2.78 2.09 1.05 1.65 K intron_retention CG2789 chr2L + chr2L_560038_560096 chr2L_560037_560038;chr2L_560096_560097 chr2L_559630_560037;chr2L_560097_560305 1.37 2.00 1.53 2.55 0.00 0.60 0.45 0.53 2.12 3.47 2.78 1.29 1.15 2.11 0.00 2.61 0.00 0.78 0.00 1.81 1.16 3.33 1.57 0.51 2.37 0.59 0.62 1.94 6.80 2.98 0.00 0.78 3.80 0.45 2.30 2.09 1.81 1.49 1.51 1.95 1.23 1.37 3.12 0.35 0.93 1.79 1.18 2.73 1.11 1.08 0.69 2.07 0.00 1.77 0.58 0.65 0.62 1.43 N alternative_last_exon I_chrX_10148341_10149525,CG34319,noncoding_22888,I_chrX_10152994_10153223 chrX - chrX_10148341_10149525,chrX_10148427_10149525 chrX_10149206_10149525 chrX_10148036_10148340 chrX_10148505_10149205 chrX_10149526_10149619 51.85 51.85 50.00 53.57 45.45 40.00 33.33 40.00 44.44 55.13 50.00 50.00 33.33 54.55 47.83 66.67 46.15 40.00 60.00 42.86 45.45 43.02 55.93 49.06 56.00 46.15 51.16 67.39 50.68 54.10 55.00 63.33 54.67 52.00 50.00 55.95 54.67 56.25 52.86 52.48 54.72 45.95 45.45 52.38 59.02 48.21 51.85 43.00 48.39 60.71 48.15 53.33 55.17 56.00 46.67 57.14 65.52 58.00 N alternative_donor ATPsyn-Cf6,I_chr3R_19181508_19181563,I_chr3R_19181524_19181702 chr3R - chr3R_19181508_19181584;chr3R_19181508_19181702 chr3R_19181508_19183230 chr3R_19181424_19181507;chr3R_19183231_19184049 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.20 4.03 0.00 0.00 0.00 0.00 0.00 3.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG42270,I_chrX_17615384_17615455,I_chrX_17639729_17640603 chrX + chrX_17614733_17615455 chrX_17614733_17614980;chrX_17615008_17615455 chrX_17614981_17615007 chrX_17614620_17614732;chrX_17615456_17615555 1.14 1.64 0.00 1.72 0.00 0.00 1.19 0.00 0.76 0.00 0.00 0.00 0.00 2.00 0.00 0.00 2.38 2.22 0.00 1.04 2.50 6.49 2.22 0.00 1.89 2.13 2.27 10.20 0.00 1.92 0.00 0.00 1.75 1.14 3.17 1.72 2.63 1.89 1.05 2.90 0.00 0.86 0.00 6.06 0.00 2.44 0.00 6.06 0.00 4.62 3.41 5.13 0.00 3.03 0.00 0.00 2.38 0.00 K intron_retention Tre1,I_chrX_5569518_5570588 chrX - chrX_5568907_5568972 chrX_5568906_5568907;chrX_5568972_5568973 chrX_5568804_5568906;chrX_5568973_5569073 5.10 3.63 6.41 1.64 3.30 5.41 5.62 2.94 3.22 6.19 8.05 3.66 5.45 1.64 4.60 1.80 3.57 5.33 5.15 3.85 6.90 11.42 7.87 4.60 12.26 14.29 5.88 4.23 32.31 1.80 11.39 5.66 2.53 4.40 9.78 8.16 4.41 5.10 3.92 5.43 11.54 3.03 6.06 5.34 6.16 5.30 4.12 6.80 2.46 6.08 5.65 2.76 3.10 5.00 0.00 3.74 2.43 2.48 K alternative_acceptor CG8312 chr3R + chr3R_5448140_5448194 chr3R_5448140_5448191 chr3R_5448075_5448139;chr3R_5448195_5448263 21.74 23.26 18.92 24.00 11.76 25.00 22.50 29.17 24.42 24.32 22.22 20.83 35.00 31.58 20.00 17.65 19.51 18.60 21.21 19.78 28.12 21.92 29.41 19.61 23.08 20.00 16.00 21.43 19.35 25.00 18.18 19.35 19.30 26.79 28.95 27.27 22.22 21.28 25.53 21.82 21.74 18.82 21.88 23.53 15.56 18.60 22.92 30.43 18.31 26.32 18.46 30.00 17.39 15.00 21.43 15.38 22.22 21.57 K intron_retention CG1578,I_chrX_11705375_11707320,RI_chrX_11709573_11710335,I_chrX_11710380_11710454 chrX - chrX_11706637_11707320 chrX_11706636_11706637;chrX_11707320_11707321 chrX_11706137_11706636;chrX_11707321_11707420 2.22 0.00 3.77 3.23 0.00 0.00 6.98 0.00 5.33 0.00 3.57 4.62 9.09 0.00 0.00 0.00 0.00 3.33 0.00 4.90 4.35 12.50 2.22 3.39 4.00 0.00 10.00 11.11 6.45 4.29 4.26 0.00 3.33 0.00 5.26 1.67 4.00 0.00 2.50 2.44 0.00 0.00 0.00 0.00 3.85 0.00 4.29 0.00 1.19 0.00 3.03 0.00 5.26 2.94 0.00 0.00 0.00 0.00 K jcn_only_AD Rap2l,I_chr2R_19951753_19952256,RI_chr2R_19952181_19952256 chr2R + chr2R_19951097_19952256;chr2R_19952181_19952256 chr2R_19951753_19952256 chr2R_19952257_19952356;chr2R_19950576_19951096 0.00 0.00 0.00 0.00 1.69 0.00 0.98 1.55 1.32 0.00 0.00 0.92 0.00 0.00 2.74 2.60 0.00 5.36 1.39 1.02 0.00 1.00 0.00 0.00 0.00 1.35 1.75 0.00 0.00 0.00 0.00 0.00 1.85 0.84 0.00 0.00 1.85 1.52 2.27 0.00 0.00 0.00 0.00 0.00 2.78 0.88 0.00 0.00 0.77 0.00 0.00 1.72 0.00 0.00 1.15 0.00 0.00 0.00 K jcn_only_AD CG7530,I_chr3R_10556352_10557136,eff chr3R - chr3R_10556352_10557105;chr3R_10556352_10557130;chr3R_10556352_10557148;chr3R_10556352_10557198 chr3R_10556352_10557126 chr3R_10556252_10556351;chr3R_10557199_10557231 24.09 21.74 28.97 23.17 29.41 16.67 41.46 29.17 27.75 29.63 30.26 22.45 28.21 26.74 35.92 29.17 25.56 26.32 33.67 25.37 31.65 NA 23.08 31.31 20.93 25.00 34.85 19.05 17.31 22.73 15.85 15.09 23.00 20.65 17.19 50.00 22.13 34.52 29.66 30.93 30.30 28.96 20.45 25.00 22.77 27.70 16.25 18.07 21.54 28.36 22.81 13.24 17.92 17.74 22.12 21.98 20.00 21.61 K multi_cassette CG32000,RI_chr4_153025_153811,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_155591_155927,I_chr4_157794_157864 chr4 + chr4_153858_155497 chr4_153858_154213;chr4_154340_154420;chr4_154551_155497 chr4_154214_154339;chr4_154421_154550 chr4_153815_153857;chr4_155498_155561 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 NA NA 100.00 75.00 NA NA NA NA NA 83.33 NA NA NA 100.00 100.00 NA NA NA NA 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 NA 80.00 100.00 NA 100.00 NA NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2388436;chrX_2388671_2390808;chrX_2390959_2391350;chrX_2391522_2395659 chrX_2388437_2388670;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2395660_2395759 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K alternative_acceptor Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19563512_19564570 chr2R_19563512_19564543 chr2R_19563412_19563511;chr2R_19564571_19564665 100.00 100.00 100.00 98.84 100.00 100.00 98.48 100.00 100.00 100.00 97.22 98.67 100.00 97.78 100.00 100.00 100.00 100.00 100.00 98.91 100.00 100.00 100.00 100.00 100.00 100.00 98.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 96.67 100.00 100.00 97.22 100.00 98.53 100.00 98.89 97.06 100.00 97.78 100.00 100.00 100.00 98.85 100.00 98.46 96.88 96.77 96.15 100.00 97.44 100.00 100.00 K alternative_donor Meics chr3L - chr3L_13957114_13957254 chr3L_13957114_13957218 chr3L_13955947_13957113;chr3L_13957255_13957397 88.89 NA NA 100.00 NA NA 92.31 87.50 88.89 NA NA 93.33 NA NA NA 87.50 87.50 NA 88.89 92.86 NA 87.50 100.00 88.89 NA 77.78 80.00 NA NA 85.71 88.89 NA NA 91.67 NA 100.00 100.00 NA NA 90.00 NA 90.00 NA 100.00 NA 88.89 NA NA 85.71 72.73 88.89 NA NA NA 88.89 NA 100.00 100.00 K jcn_only_AA Cap chrX - chrX_16486780_16486976 chrX_16486828_16486976 chrX_16486977_16487116;chrX_16483660_16486779 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 NA 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 NA 2.50 0.00 0.00 4.76 2.22 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD alt,I_chr3R_13503901_13504925,RI_chr3R_13503901_13505368,I_chr3R_13503901_13507824 chr3R - chr3R_13503901_13507816;chr3R_13503901_13508123;chr3R_13503901_13508180 chr3R_13503901_13508178 chr3R_13503801_13503900;chr3R_13508181_13508234 86.93 85.42 89.77 85.55 94.20 91.78 85.71 85.16 90.81 NA 93.33 90.30 92.98 89.47 90.43 84.21 90.91 96.77 83.53 85.19 90.20 90.00 96.77 80.77 86.36 91.35 80.77 69.57 NA 69.23 84.21 NA 48.28 89.36 NA NA 80.77 92.00 80.77 79.49 NA 86.21 93.24 77.27 96.15 NA NA NA 89.58 83.33 82.61 87.50 75.00 NA 93.62 NA 90.91 67.74 K cassette cno,I_chr3R_999718_999986,I_chr3R_999737_999777 chr3R - chr3R_1008608_1011090 chr3R_1008608_1009498;chr3R_1009706_1011090 chr3R_1009499_1009705 chr3R_1008441_1008607;chr3R_1011091_1011212 100.00 100.00 100.00 97.14 100.00 100.00 100.00 97.78 98.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 98.73 100.00 97.62 95.65 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.85 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 K alternative_acceptor CG7692 chr3L + chr3L_17348672_17348766 chr3L_17348672_17348763 chr3L_17347868_17348671;chr3L_17348767_17349380 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA 88.89 NA NA NA NA NA 100.00 NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG7611,I_chr3L_21518817_21520283 chr3L + chr3L_21518817_21520283 chr3L_21518817_21519068;chr3L_21520037_21520283 chr3L_21519069_21520036 chr3L_21518717_21518816;chr3L_21520284_21520383 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG14872,REI_chr3R_11334285_11334336 chr3R - chr3R_11334285_11334385 chr3R_11334284_11334285;chr3R_11334385_11334386 chr3R_11334185_11334284;chr3R_11334386_11334436 8.16 8.77 8.51 11.54 7.41 7.69 18.18 9.33 9.32 0.00 12.12 12.31 7.89 9.52 5.77 8.82 11.11 3.92 4.26 11.49 6.90 6.85 7.14 8.33 5.13 7.69 4.82 7.55 6.45 6.06 7.41 7.02 9.33 11.48 8.16 12.07 3.23 8.00 7.50 10.71 5.94 9.76 12.50 9.26 9.46 5.43 9.86 4.60 9.09 12.77 10.23 5.88 10.42 10.64 6.90 7.50 6.02 9.60 K intron_retention CG5168 chr2L + chr2L_10424931_10424991 chr2L_10424930_10424931;chr2L_10424991_10424992 chr2L_10424862_10424930;chr2L_10424992_10425068 1.20 1.07 0.88 1.88 0.82 0.00 0.98 1.00 1.18 0.00 1.01 1.44 0.00 1.32 2.31 2.04 0.87 0.65 1.70 1.49 0.34 2.07 1.96 1.21 1.63 1.62 2.31 3.51 2.32 0.84 2.45 1.34 1.52 1.15 1.43 2.01 2.09 0.98 1.22 2.96 2.10 1.16 0.00 0.00 0.96 1.20 0.87 2.08 0.93 0.91 0.85 0.86 0.57 1.28 2.13 0.77 0.59 1.32 N jcn_only_AA CG32369,noncoding_11198 chr3L - chr3L_7774151_7796368 chr3L_7796250_7796368 chr3L_7796369_7797807;chr3L_7774032_7774150 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29.55 0.00 0.00 0.00 9.79 0.00 0.00 0.00 0.00 0.00 0.00 14.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 K jcn_only_AD trbd,hyd chr3R - chr3R_5545344_5545441 chr3R_5545344_5545435 chr3R_5545199_5545343;chr3R_5545442_5548942 1.52 1.25 1.14 1.18 0.00 0.00 2.14 1.94 2.33 8.51 2.38 0.00 1.01 2.04 2.25 0.00 1.35 0.00 1.59 1.58 2.67 3.57 1.68 1.11 1.08 1.15 2.80 0.00 2.08 1.25 3.16 2.86 1.25 1.52 1.33 4.05 0.00 3.45 8.04 0.74 0.00 1.04 4.88 1.25 2.63 2.44 2.17 0.00 2.87 2.13 0.69 1.94 0.00 0.00 0.00 5.66 2.33 0.00 K alternative_donor CG8289 chrX - chrX_17528387_17528606 chrX_17528387_17528575 chrX_17527710_17528386;chrX_17528607_17529007 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 2.63 3.33 0.00 0.00 3.57 0.00 0.00 0.00 1.92 5.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 2.56 0.00 8.70 0.00 0.00 0.00 2.44 0.00 0.00 0.00 2.27 0.00 0.00 K jcn_only_AD Keap1 chr3R - chr3R_12902616_12905594;chr3R_12902616_12905148 chr3R_12902616_12905144 chr3R_12902299_12902615;chr3R_12905595_12905636 12.50 NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA LanA,I_chr3L_6208090_6208194 chr3L - chr3L_6208090_6208194 chr3L_6208112_6208194 chr3L_6208195_6208294;chr3L_6207990_6208089 99.91 99.89 99.91 100.00 99.92 99.81 99.83 99.91 99.95 100.00 99.91 99.84 99.88 100.00 99.93 100.00 99.76 99.82 100.00 99.96 99.91 99.91 99.77 99.89 99.44 100.00 99.92 100.00 99.81 99.83 98.80 100.00 99.79 99.95 100.00 99.89 99.81 99.87 100.00 99.91 100.00 99.84 100.00 100.00 99.43 99.64 100.00 99.84 99.96 100.00 99.91 99.83 99.85 100.00 99.93 100.00 100.00 99.82 K jcn_only_AA Sdc,RI_chr2R_17286086_17286391,I_chr2R_17286089_17286391,I_chr2R_17286819_17367595,I_chr2R_17324594_17367595 chr2R - chr2R_17286086_17286679 chr2R_17286089_17286679 chr2R_17286680_17286818;chr2R_17286037_17286085 46.88 48.85 46.88 42.79 40.91 47.83 49.17 42.94 50.51 47.14 41.86 45.37 36.00 43.70 50.79 50.66 50.00 43.21 54.40 48.39 52.22 48.02 52.15 43.36 38.18 52.13 45.93 39.53 46.81 53.63 47.06 43.90 49.10 41.42 50.71 49.54 47.13 53.57 54.12 51.23 53.57 43.33 47.31 43.08 37.69 48.62 40.40 39.66 46.27 30.00 43.85 42.05 44.97 36.49 51.82 48.84 37.93 42.59 K intron_retention Caki,I_chr3R_17645303_17645375 chr3R - chr3R_17645303_17645375 chr3R_17645302_17645303;chr3R_17645375_17645376 chr3R_17645267_17645302;chr3R_17645376_17645475 69.23 80.00 90.91 NA 77.78 NA 71.43 66.67 62.07 NA NA 73.33 90.00 66.67 NA 76.67 NA NA 90.91 64.29 NA 77.27 NA NA NA NA NA NA 81.25 66.67 NA NA 87.50 56.25 NA NA 53.85 NA NA 62.96 NA 68.75 NA 64.71 NA NA 66.67 69.23 64.29 NA 69.23 NA NA NA 72.73 NA NA NA K intron_retention woc,I_chr3R_23089174_23089695,I_chr3R_23096096_23096561 chr3R - chr3R_23083366_23083430 chr3R_23083365_23083366;chr3R_23083430_23083431 chr3R_23083266_23083365;chr3R_23083431_23083560 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32803,RI_chrX_1795648_1795745,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1795311_1795469 chrX_1795310_1795311;chrX_1795469_1795470 chrX_1795116_1795310;chrX_1795470_1795647 4.10 0.00 0.00 14.81 8.70 0.00 13.33 2.50 5.56 10.53 NA 10.87 NA 0.00 8.33 7.69 0.00 0.00 17.86 8.33 0.00 6.67 6.67 2.44 0.00 0.00 0.00 NA 3.03 0.00 5.00 8.89 0.00 4.76 0.00 3.85 4.65 2.56 5.41 6.38 4.44 2.00 0.00 0.00 6.00 3.03 0.00 5.00 12.73 0.00 4.76 0.00 11.11 0.00 3.33 4.35 7.69 6.52 K intron_retention nct,I_chr3R_20679262_20679308 chr3R + chr3R_20679809_20680083 chr3R_20679808_20679809;chr3R_20680083_20680084 chr3R_20679598_20679808;chr3R_20680084_20680151 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 K intron_retention alph,I_chr3R_25417890_25422962 chr3R + chr3R_25418927_25418993 chr3R_25418926_25418927;chr3R_25418993_25418994 chr3R_25418910_25418926;chr3R_25418994_25419629 94.44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 94.44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor RnrL,I_chr2L_10327455_10327630 chr2L - chr2L_10327455_10327686 chr2L_10327455_10327630 chr2L_10327355_10327454;chr2L_10327687_10327730 1.15 0.65 1.32 1.30 1.32 0.78 1.24 0.31 1.32 1.00 0.00 1.06 2.03 1.50 0.59 0.41 1.83 0.00 0.60 1.25 0.86 1.53 0.51 1.38 1.65 0.63 2.53 7.14 6.93 1.52 4.61 0.92 0.53 1.15 0.00 4.08 1.53 0.75 1.53 1.02 1.40 0.37 0.67 0.87 0.89 2.70 0.68 1.60 1.86 0.93 1.97 0.88 1.72 0.93 0.56 0.88 1.68 2.34 K intron_retention tomosyn,I_chrX_12531219_12531470,I_chrX_12534873_12541731,I_chrX_12548772_12549203 chrX + chrX_12545632_12545707 chrX_12545631_12545632;chrX_12545707_12545708 chrX_12545512_12545631;chrX_12545708_12546157 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 5.26 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 5.00 0.00 0.00 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8605 chr3L + chr3L_7318983_7319058 chr3L_7318982_7318983;chr3L_7319058_7319059 chr3L_7318190_7318982;chr3L_7319059_7319423 0.00 0.00 0.00 6.82 7.69 0.00 0.00 2.56 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.23 2.94 NA 0.00 0.00 0.00 0.00 0.00 8.16 13.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 6.56 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor E_chr3R_20923460_20923586,CG33096,CG33095 chr3R + chr3R_20923441_20923586 chr3R_20923441_20923556 chr3R_20923364_20923440;chr3R_20923587_20923686 100.00 94.74 100.00 100.00 100.00 100.00 100.00 96.97 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 97.67 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8443558_8444874 chr3L_8443557_8443558;chr3L_8444874_8444875 chr3L_8443524_8443557;chr3L_8444875_8444926 18.18 NA 18.18 9.09 NA NA 38.89 17.50 17.95 NA NA 13.95 12.50 13.33 14.29 21.88 20.00 NA 20.69 12.82 NA NA 24.14 NA NA 20.00 18.75 NA 14.29 21.74 25.00 NA 20.83 22.58 15.38 26.92 6.25 NA NA 23.33 NA 18.18 NA 0.00 NA 14.29 NA 13.16 23.33 NA 3.85 NA NA NA 21.74 NA NA 15.38 K intron_retention Adam,I_chr2R_5856741_5856974,I_chr2R_5856741_5857245,I_chr2R_5857058_5857250,I_chr2R_5857078_5857245 chr2R + chr2R_5857058_5857245 chr2R_5857057_5857058;chr2R_5857245_5857246 chr2R_5856978_5857057;chr2R_5857246_5857345 1.05 0.55 1.09 2.02 0.00 0.00 4.76 1.20 1.40 0.60 1.85 1.05 1.65 0.74 0.00 0.00 0.00 0.56 0.58 1.05 0.00 2.94 1.41 0.75 2.96 1.20 0.93 0.97 1.59 0.00 1.95 0.97 0.84 0.00 2.00 2.08 0.58 1.45 1.34 1.63 2.88 1.05 1.40 1.61 1.06 1.35 1.71 1.09 1.30 2.80 0.94 0.00 0.00 0.00 0.00 0.88 1.06 1.04 K alternative_donor Cdk4,RI_chr2R_12471503_12471656 chr2R + chr2R_12467202_12468346;chr2R_12467432_12468346;chr2R_12467241_12468346;chr2R_12467474_12468346;chr2R_12467225_12468346;chr2R_12467227_12468346;chr2R_12467261_12468346;chr2R_12467039_12468346 chr2R_12467275_12468346 chr2R_12468347_12468520;chr2R_12467030_12467038 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 8.33 0.00 0.00 12.50 0.00 0.00 10.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 8.33 0.00 0.00 0.00 0.00 4.00 K alternative_donor CG11248 chr3L + chr3L_21673324_21673399;chr3L_21673333_21673399 chr3L_21673253_21673399 chr3L_21673400_21675533;chr3L_21673237_21673252 7.14 NA NA NA NA NA NA 14.29 0.00 NA NA 0.00 NA NA NA 16.67 NA NA NA 16.67 NA NA NA NA NA 0.00 42.86 NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_donor lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3955872_3957375;chr2R_3955788_3957375;chr2R_3955517_3957375 chr2R_3955586_3957375 chr2R_3957376_3957784;chr2R_3955509_3955516 1.59 0.00 1.72 2.47 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 2.50 1.30 2.04 1.82 0.00 1.92 1.02 2.27 4.00 12.50 20.00 12.50 0.00 12.50 14.29 8.70 5.56 2.99 0.00 1.85 1.11 0.00 14.29 5.56 10.00 0.00 2.08 6.25 0.80 0.00 0.00 0.00 0.00 NA 3.70 2.47 NA 25.00 12.50 0.00 NA 1.23 NA NA 0.00 K jcn_only_AA CG5961,RI_chr3R_8285626_8285694,I_chr3R_8285631_8285980 chr3R - chr3R_8285626_8285694 chr3R_8285631_8285694 chr3R_8285695_8285734;chr3R_8285531_8285625 96.55 100.00 NA NA NA NA 96.55 96.55 92.31 NA NA NA NA NA 95.24 85.29 NA NA 100.00 97.44 NA NA 100.00 100.00 NA NA 95.83 100.00 NA NA 100.00 NA NA 93.55 NA NA 95.65 NA NA 94.29 NA 100.00 NA 95.24 NA 95.83 NA 92.59 100.00 NA 100.00 100.00 95.24 100.00 NA 100.00 94.44 NA K intron_retention Pomp,I_chr2L_20788087_20788402 chr2L + chr2L_20787786_20787849 chr2L_20787785_20787786;chr2L_20787849_20787850 chr2L_20787679_20787785;chr2L_20787850_20788086 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 1.67 2.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor MTF-1 chr3L + chr3L_9423937_9426998 chr3L_9424434_9426998 chr3L_9426999_9427146;chr3L_9423442_9423936 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 90.91 100.00 88.89 100.00 100.00 85.71 75.00 100.00 100.00 100.00 94.44 75.00 100.00 100.00 88.89 100.00 100.00 91.67 94.44 100.00 85.71 72.73 100.00 100.00 83.33 100.00 100.00 100.00 90.00 100.00 92.86 100.00 87.50 100.00 88.89 100.00 100.00 85.71 92.31 100.00 100.00 100.00 100.00 100.00 100.00 83.33 87.50 100.00 87.50 K intron_retention CycG,I_chr3R_27427946_27436602,I_chr3R_27427953_27429034,I_chr3R_27427953_27431334,RE_chr3R_27427953_27436598 chr3R - chr3R_27427953_27435041 chr3R_27427952_27427953;chr3R_27435041_27435042 chr3R_27427853_27427952;chr3R_27435042_27435130 24.44 22.50 27.21 22.87 29.82 30.61 28.07 27.02 26.15 18.60 41.18 27.24 33.64 34.23 36.21 31.98 27.34 35.29 34.35 23.95 32.39 14.95 20.10 15.25 30.77 19.13 28.30 23.48 20.00 18.44 27.27 18.18 20.00 23.90 24.11 30.08 17.65 19.20 16.78 18.50 20.51 22.48 29.00 16.49 9.43 21.05 18.42 23.81 25.35 20.78 24.50 22.41 33.33 24.44 30.14 25.00 32.86 47.37 K intron_retention Tsp42Ee,RI_chr2R_2904593_2904783 chr2R + chr2R_2900622_2904517 chr2R_2900621_2900622;chr2R_2904517_2904518 chr2R_2900538_2900621;chr2R_2904518_2904592 0.19 0.00 0.14 0.10 0.50 0.24 0.27 0.20 0.24 0.00 0.00 0.22 0.42 0.41 0.29 0.19 0.24 0.22 0.13 0.12 0.11 0.45 0.34 0.19 0.12 0.00 0.42 1.01 0.68 0.49 0.00 0.31 0.23 0.21 0.20 0.24 0.15 0.12 0.00 0.18 0.00 0.18 0.30 0.24 0.00 0.16 0.17 0.65 0.22 0.27 0.36 0.00 0.00 0.00 0.07 0.11 0.15 0.00 K jcn_only_AA CG11665,RI_chr2R_1530001_1531078,I_chr2R_1530001_1531096,RI_chr2R_1530001_1531145,RI_chr2R_1535330_1540011 chr2R - chr2R_1530001_1531096 chr2R_1531041_1531096 chr2R_1531097_1531178;chr2R_1529901_1530000 99.48 99.16 99.16 100.00 98.78 98.91 99.31 99.48 99.53 100.00 98.77 99.50 99.11 100.00 100.00 100.00 100.00 99.06 100.00 99.62 100.00 90.00 98.40 99.11 96.72 100.00 99.32 98.08 100.00 100.00 100.00 97.92 97.22 100.00 98.70 96.20 97.18 98.78 99.02 98.67 97.10 100.00 100.00 99.20 97.96 97.32 100.00 97.44 100.00 98.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Mocs1 chr3L + chr3L_11065511_11065549;chr3L_11065511_11065661 chr3L_11065511_11065569 chr3L_11064659_11065510;chr3L_11065662_11066454 71.25 62.50 72.41 75.56 NA 77.42 79.63 66.67 73.02 63.89 61.90 76.09 60.00 NA 71.88 85.37 90.00 82.76 74.29 65.38 45.00 67.42 67.35 62.86 80.00 67.65 59.65 66.67 59.62 82.46 66.67 74.29 86.11 75.68 64.00 52.27 79.49 63.89 61.76 72.73 71.08 76.47 NA 78.26 69.57 62.90 68.00 72.73 65.96 75.00 68.52 76.92 NA NA 72.41 75.86 63.41 71.43 K intron_retention Cortactin chr3R - chr3R_16889834_16890016 chr3R_16889833_16889834;chr3R_16890016_16890017 chr3R_16889620_16889833;chr3R_16890017_16890085 17.48 30.77 25.00 12.82 22.22 0.00 26.09 22.86 14.29 NA 12.50 16.67 29.41 23.53 20.00 12.90 23.08 19.05 31.25 14.29 14.29 17.31 19.15 24.24 14.29 11.76 23.08 12.50 33.33 19.23 21.43 18.75 15.38 14.29 15.38 21.88 22.22 NA 17.14 15.69 14.29 14.29 15.00 19.23 15.38 28.57 23.33 12.50 15.79 17.65 12.50 NA NA 8.33 19.23 12.50 29.17 NA K jcn_only_AA Sec61beta,I_chr2R_10506408_10506473 chr2R + chr2R_10506408_10506473 chr2R_10506408_10506463 chr2R_10506341_10506407;chr2R_10506474_10506539 100.00 99.63 100.00 100.00 98.60 99.09 98.99 100.00 99.55 100.00 100.00 100.00 100.00 100.00 100.00 99.49 99.48 100.00 100.00 99.83 99.48 100.00 100.00 100.00 99.46 100.00 100.00 100.00 99.51 100.00 99.11 100.00 100.00 100.00 99.41 100.00 99.77 99.76 100.00 99.27 100.00 99.59 100.00 99.39 100.00 99.74 100.00 100.00 99.79 100.00 99.37 100.00 99.60 99.31 100.00 99.35 99.35 99.78 K intron_retention gig,I_chr3L_20128721_20128786 chr3L + chr3L_20129035_20129094 chr3L_20129034_20129035;chr3L_20129094_20129095 chr3L_20128787_20129034;chr3L_20129095_20131168 9.11 26.67 NA 19.05 NA NA 11.76 NA 10.71 NA NA 0.00 NA NA NA 14.29 NA NA 11.11 5.71 NA 9.52 10.81 0.00 0.00 NA 8.70 NA 0.00 13.33 13.33 NA 23.08 9.52 5.88 0.00 0.00 4.76 4.00 14.29 NA 8.33 0.00 0.00 NA 14.29 NA NA 14.29 0.00 4.35 10.53 NA NA 11.11 5.88 NA NA K intron_retention Src42A chr2R + chr2R_1898053_1898114 chr2R_1898052_1898053;chr2R_1898114_1898115 chr2R_1897884_1898052;chr2R_1898115_1898273 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Rph,I_chrX_10644396_10644958,I_chrX_10646283_10647245,I_chrX_10647710_10648325,RI_chrX_10649048_10651427 chrX - chrX_10645816_10647245 chrX_10645816_10645935;chrX_10646283_10647245 chrX_10645936_10646282 chrX_10644959_10645815;chrX_10647246_10647345 24.00 15.38 9.52 52.38 16.67 13.04 35.29 50.00 24.00 28.57 61.11 31.71 36.36 40.00 18.75 40.00 22.22 18.52 29.17 38.78 66.67 36.84 35.29 13.04 27.27 30.77 30.77 20.00 30.77 25.00 37.50 27.27 13.33 40.00 30.00 6.67 22.73 18.75 16.67 19.05 18.18 22.45 38.46 26.67 10.53 25.00 18.75 12.50 27.91 15.00 20.00 50.00 11.76 7.14 18.52 23.08 19.05 9.52 K jcn_only_AA PNGase,I_chr2R_1906759_1906817,I_chr2R_1906899_1906977 chr2R + chr2R_1905861_1905922 chr2R_1905861_1905911 chr2R_1905769_1905860;chr2R_1905923_1906012 4.09 7.94 2.65 4.20 8.43 3.33 3.10 3.24 3.32 5.00 1.06 4.09 2.15 1.33 1.79 2.11 0.00 1.11 6.54 4.59 4.65 2.07 5.88 4.96 1.69 2.13 0.00 3.17 6.33 3.39 16.67 10.00 7.62 3.01 7.14 4.76 3.62 3.85 1.64 3.90 8.33 2.65 0.00 5.36 8.93 9.62 4.94 10.77 7.84 7.78 4.13 4.60 8.06 1.69 6.34 3.19 2.94 7.14 K jcn_only_AD Scsalpha,I_chr3L_3817163_3817436,I_chr3L_3817289_3817436 chr3L + chr3L_3817081_3817436 chr3L_3817289_3817436 chr3L_3817437_3817536;chr3L_3817063_3817080 0.23 0.25 0.28 0.23 0.00 0.00 0.39 0.89 0.17 0.00 0.00 0.16 0.00 0.45 0.25 0.38 1.34 0.00 0.00 0.28 0.00 0.91 0.00 0.00 0.00 0.00 0.35 0.51 0.00 0.00 0.00 0.30 0.53 0.00 0.43 0.64 0.14 0.00 0.15 0.00 0.00 0.46 0.00 0.34 0.35 0.24 0.20 0.00 0.18 0.54 0.24 0.00 0.55 0.23 0.85 0.43 0.81 0.68 K jcn_only_AD CG1578,RI_chrX_11709573_11709680,I_chrX_11709573_11710263,RI_chrX_11709573_11710335,noncoding_23225,I_chrX_11710380_11710454 chrX - chrX_11709573_11709680;chrX_11709573_11710458;chrX_11709573_11710335;chrX_11709573_11710454 chrX_11709573_11710263 chrX_11709473_11709572;chrX_11710459_11710479 9.52 NA NA NA NA NA NA NA 10.00 NA NA 10.71 NA NA NA NA NA NA NA 7.14 NA NA 0.00 3.45 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 9.52 10.00 NA 14.81 NA 7.41 NA NA NA 25.00 10.00 NA NA NA NA NA 12.90 NA 5.00 NA K cassette scrib,I_chr3R_22381374_22399575,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22381374_22392082 chr3R_22381374_22381935;chr3R_22382011_22392082 chr3R_22381936_22382010 chr3R_22381305_22381373;chr3R_22392083_22392297 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CaMKI,I_chr4_467862_471815,I_chr4_470923_470996,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_470923_470996 chr4_470943_470996 chr4_470997_471096;chr4_470868_470922 90.00 88.89 93.75 96.00 NA NA 95.00 85.71 93.33 NA NA 91.30 100.00 100.00 84.62 92.59 84.62 100.00 81.82 96.43 NA NA 100.00 NA NA 88.89 85.71 NA NA NA 94.12 NA NA 86.67 87.50 87.50 87.50 NA 100.00 90.91 NA 95.83 87.50 88.89 NA 90.00 100.00 NA 90.91 70.00 87.50 90.00 NA NA 93.75 88.89 90.00 81.82 K jcn_only_AD I_chr2R_7171366_7171418,fbl6,dare chr2R - chr2R_7176066_7176897;chr2R_7176066_7176572 chr2R_7176066_7177174 chr2R_7175150_7176065;chr2R_7177175_7177253 0.00 NA NA 2.63 NA NA 0.00 0.00 3.33 NA NA 0.00 0.00 NA 4.17 10.34 NA NA 10.34 2.08 NA NA 0.00 0.00 NA 4.35 3.57 NA NA 0.00 4.17 NA 0.00 2.44 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 4.26 NA NA 0.00 NA NA 2.44 NA NA NA K alternative_donor Vps4,I_chrX_17802079_17802606 chrX + chrX_17801885_17802606 chrX_17802079_17802606 chrX_17802607_17802706;chrX_17801716_17801884 0.57 0.52 0.00 0.53 1.03 0.00 0.48 0.42 0.56 0.00 0.74 0.74 0.00 1.54 0.53 0.00 0.00 0.65 0.75 0.61 0.00 1.02 0.71 0.43 0.00 0.00 0.53 0.71 1.21 0.65 3.70 0.76 1.32 1.28 0.68 0.57 0.34 1.12 0.89 1.42 0.00 0.72 0.94 2.23 1.04 0.52 0.43 0.62 0.35 2.34 0.82 0.00 0.74 0.49 0.00 0.56 0.40 0.00 K cassette CG14425,Sxl,CG14425_Sxl,CEF_chrX_6984538_6992033 chrX - chrX_6973401_6978631 chrX_6973401_6975021;chrX_6975088_6978631 chrX_6975022_6975087 chrX_6972240_6973400;chrX_6978632_6978852 39.05 30.77 NA 38.10 NA NA 15.00 69.23 40.00 NA NA 47.06 50.00 NA 36.36 62.50 NA NA NA 41.38 NA NA 35.71 40.00 31.58 NA 31.25 NA NA NA 45.45 NA 46.15 75.00 30.77 NA 55.56 33.33 31.58 28.57 36.36 55.56 NA 30.77 NA 30.77 43.75 50.00 61.54 45.45 35.00 27.27 NA 55.56 NA 25.00 30.77 45.45 K alternative_donor CG5626,I_chr3L_12197507_12197558 chr3L - chr3L_12197507_12197742 chr3L_12197507_12197736 chr3L_12197445_12197506;chr3L_12197743_12198126 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4991263_4991560 chr2L_4991263_4991384;chr2L_4991437_4991560 chr2L_4991385_4991436 chr2L_4991145_4991262;chr2L_4991561_4992436 1.02 1.06 1.05 0.95 0.81 0.83 0.55 1.30 1.25 1.07 0.72 0.53 1.35 0.72 0.00 1.01 2.70 0.51 0.52 0.97 0.66 3.52 0.32 2.02 0.74 0.40 2.36 1.35 1.94 0.88 0.76 1.02 1.04 1.66 1.64 2.16 1.03 1.01 0.99 1.68 0.68 0.60 0.81 3.02 2.74 1.76 0.69 0.90 1.03 1.32 1.81 2.45 0.73 1.42 0.92 1.64 0.40 1.19 K jcn_only_AA Pp4-19C,I_chrX_20293932_20294672,RI_chrX_20293980_20294069,REI_chrX_20294004_20294672 chrX - chrX_20293980_20294672 chrX_20294028_20294672 chrX_20294673_20294772;chrX_20293904_20293979 2.40 1.90 3.70 0.74 0.00 0.00 2.27 2.40 2.04 2.47 1.33 0.94 2.94 3.16 3.97 3.15 2.70 1.96 0.86 1.09 2.94 2.27 4.51 3.61 4.07 2.48 2.44 1.48 2.61 1.53 0.82 2.99 1.09 1.82 0.82 1.45 3.72 2.31 3.43 2.83 7.79 2.31 3.80 3.45 5.69 0.73 2.61 2.07 5.24 4.55 0.52 6.12 0.98 2.33 2.08 2.44 2.30 4.23 K intron_retention RI_chrX_1954878_1955077,CG4281,CG14054,I_chrX_1962457_1964222 chrX - chrX_1958854_1958906 chrX_1958853_1958854;chrX_1958906_1958907 chrX_1958580_1958853;chrX_1958907_1959155 14.55 14.68 10.00 55.56 12.50 15.56 21.74 7.32 7.04 12.36 12.28 9.52 9.80 8.89 9.88 8.33 15.09 9.23 8.00 16.67 9.46 25.15 14.86 11.81 26.92 32.50 19.10 16.67 33.33 24.26 42.31 18.29 17.02 11.70 16.13 30.00 14.88 14.29 13.02 21.81 28.93 13.61 11.54 8.40 16.25 14.42 11.22 27.91 13.33 19.57 17.09 14.55 12.00 16.05 8.45 12.64 8.05 15.24 K intron_retention Jafrac1,I_chrX_13223890_13225154,I_chrX_13224064_13225154,RI_chrX_13224713_13225154 chrX + chrX_13224569_13225154 chrX_13224568_13224569;chrX_13225154_13225155 chrX_13224432_13224568;chrX_13225155_13225254 86.19 NA NA 92.31 NA NA 85.71 85.71 90.00 NA 100.00 86.67 NA NA NA 83.33 NA NA NA 77.78 90.91 81.48 NA 90.00 77.78 NA 93.75 95.65 78.95 NA NA 45.45 81.82 NA NA 80.00 NA NA NA 88.89 73.33 90.00 NA NA 60.00 90.91 NA 86.67 90.91 NA 81.82 NA NA NA NA NA NA NA K jcn_only_AA CG8334,I_chr3L_19870731_19870822 chr3L + chr3L_19872580_19872644 chr3L_19872580_19872635 chr3L_19871933_19872579;chr3L_19872645_19872802 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 99.23 100.00 100.00 100.00 97.14 100.00 98.44 100.00 96.30 98.25 100.00 99.21 100.00 98.21 100.00 100.00 98.68 100.00 100.00 100.00 98.08 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 99.07 100.00 96.77 100.00 97.96 100.00 97.06 100.00 100.00 95.83 100.00 97.56 98.02 100.00 100.00 98.04 100.00 100.00 100.00 100.00 K alternative_donor Pcd,RI_chr3R_25549090_25549159 chr3R + chr3R_25549079_25549159 chr3R_25549090_25549159 chr3R_25549160_25549259;chr3R_25548990_25549078 1.41 1.52 0.00 1.41 0.00 0.00 1.67 1.72 2.15 0.00 2.70 1.47 0.00 0.00 3.92 0.00 0.00 0.00 2.86 1.15 3.57 1.92 1.41 1.39 0.00 2.70 4.11 0.00 2.44 4.26 2.33 1.85 0.00 3.39 2.86 0.00 2.60 0.00 0.00 2.78 0.00 2.53 0.00 1.72 1.82 1.35 1.04 2.94 3.85 0.00 1.30 2.38 1.22 0.00 0.00 1.37 2.27 1.49 K jcn_only_AA CG31368,F_chr3R_7709658_7714233 chr3R + chr3R_7717514_7717581 chr3R_7717514_7717572 chr3R_7717145_7717513;chr3R_7717582_7718093 100.00 100.00 96.88 100.00 100.00 100.00 96.08 98.21 98.73 95.00 100.00 98.11 100.00 96.77 100.00 97.73 100.00 100.00 96.77 98.65 97.06 100.00 98.18 100.00 96.00 97.62 100.00 94.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 98.67 95.35 98.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 94.29 98.04 100.00 100.00 98.48 100.00 K intron_retention Pen chr2L + chr2L_10057760_10057820 chr2L_10057759_10057760;chr2L_10057820_10057821 chr2L_10057622_10057759;chr2L_10057821_10058134 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.70 0.00 0.76 0.74 0.00 0.00 0.00 0.00 0.79 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD CG6293,Bruce chr3R - chr3R_6136241_6137129;chr3R_6136241_6136995 chr3R_6136241_6137183 chr3R_6135621_6136240;chr3R_6137184_6137328 100.00 100.00 100.00 99.82 100.00 100.00 97.03 100.00 100.00 99.62 100.00 99.16 97.26 100.00 100.00 100.00 99.77 98.41 100.00 99.39 100.00 100.00 100.00 100.00 100.00 99.85 99.80 99.51 99.42 100.00 99.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.29 99.84 99.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.61 100.00 99.87 100.00 100.00 100.00 K intron_retention Ant2,sesB chrX - chrX_10676334_10676412 chrX_10676333_10676334;chrX_10676412_10676413 chrX_10676206_10676333;chrX_10676413_10676713 0.55 0.28 0.40 0.63 0.00 0.69 0.90 0.45 0.43 1.92 0.36 0.48 0.00 0.58 0.54 0.44 0.63 0.38 0.15 0.31 0.32 1.63 0.48 0.50 0.66 1.79 1.00 1.37 0.93 0.70 0.17 1.62 0.88 0.60 0.43 0.51 0.44 0.54 0.84 0.55 1.88 0.40 0.38 0.16 1.15 0.68 0.47 1.40 0.66 0.72 0.60 0.23 0.96 0.00 0.87 0.62 0.21 1.30 K intron_retention PGRP-SA,CG11695 chrX + chrX_11456314_11456371 chrX_11456313_11456314;chrX_11456371_11456372 chrX_11455562_11456313;chrX_11456372_11456490 0.00 0.00 0.00 0.40 0.15 0.53 0.39 0.10 0.14 1.67 0.00 0.22 0.45 0.00 0.26 0.00 0.00 0.00 0.30 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.26 0.00 0.00 0.33 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.17 0.46 0.00 0.00 0.00 0.00 0.43 0.10 0.00 0.49 0.00 0.40 0.68 0.16 0.00 0.10 0.00 K alternative_acceptor lig,I_chr2R_3959744_3959851,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3959744_3959867 chr2R_3959744_3959851 chr2R_3959644_3959743;chr2R_3959868_3959951 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.26 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.46 0.45 0.00 0.00 0.00 0.24 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG8399 chr2R + chr2R_11905363_11909393 chr2R_11905363_11909350 chr2R_11905260_11905362;chr2R_11909394_11909881 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor Qm,E_chr3L_23087825_23087922,RI_chr3L_23087947_23088093 chr3L - chr3L_23087947_23088093 chr3L_23087947_23088005 chr3L_23087923_23087946;chr3L_23088094_23088193 99.74 99.76 99.75 99.89 99.42 99.60 99.76 99.75 99.71 99.37 99.70 99.78 99.74 99.72 99.84 99.74 99.70 99.77 99.86 99.76 99.63 99.72 99.57 99.79 99.47 99.68 99.77 99.46 99.09 99.88 99.71 99.54 99.75 99.74 99.89 99.81 99.66 99.72 99.76 99.82 99.36 99.70 99.63 99.85 99.45 99.79 99.82 99.84 99.86 99.60 99.88 99.82 99.81 99.65 99.85 99.72 99.71 99.75 K intron_retention CG34409,CG12948 chr3R - chr3R_5569585_5569633 chr3R_5569584_5569585;chr3R_5569633_5569634 chr3R_5569454_5569584;chr3R_5569634_5569736 0.00 NA NA 0.00 NA NA NA NA 22.22 NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG14438 chrX + chrX_6653928_6654023 chrX_6653928_6654020 chrX_6653906_6653927;chrX_6654024_6654243 87.50 NA NA 100.00 NA NA 90.00 92.31 77.78 NA NA 83.33 NA 88.89 72.73 80.00 66.67 NA 85.71 93.75 NA NA 88.89 NA NA NA 100.00 NA NA 90.91 80.00 NA NA 85.71 78.57 81.82 81.82 NA 72.73 88.89 NA 100.00 100.00 NA NA NA NA 90.91 92.86 NA 77.78 NA NA NA 87.50 NA NA NA K intron_retention CG11781 chr3R - chr3R_20850466_20850521 chr3R_20850465_20850466;chr3R_20850521_20850522 chr3R_20850149_20850465;chr3R_20850522_20850731 0.00 0.00 2.94 3.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Stat92E,I_chr3R_16365079_16365145,att-ORFB chr3R - chr3R_16365079_16365145 chr3R_16365079_16365121 chr3R_16364979_16365078;chr3R_16365146_16365188 99.32 98.86 98.89 99.14 98.78 100.00 97.65 99.21 99.49 97.96 97.44 100.00 98.72 100.00 100.00 100.00 98.73 98.88 100.00 99.41 98.75 97.62 100.00 99.03 100.00 98.63 98.90 97.56 100.00 98.18 100.00 100.00 100.00 99.21 97.96 98.25 100.00 98.97 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 98.41 100.00 99.32 100.00 100.00 98.39 98.68 98.28 100.00 98.55 100.00 100.00 K intron_retention CG14741 chr3R - chr3R_7901145_7901212 chr3R_7901144_7901145;chr3R_7901212_7901213 chr3R_7900896_7901144;chr3R_7901213_7901434 0.00 0.00 0.00 1.89 0.50 0.00 0.87 0.27 0.40 0.00 0.00 0.00 0.00 0.47 0.41 1.08 0.00 0.00 0.83 0.51 0.45 0.89 0.61 0.00 0.00 0.00 0.74 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.51 0.63 0.67 0.00 0.52 0.00 0.00 0.00 0.78 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette Nedd4,I_chr3L_17534127_17534409,I_chr3L_17534504_17535990,I_chr3L_17535485_17536604,I_chr3L_17536186_17536604,I_chr3L_17536813_17536863 chr3L + chr3L_17534504_17536604 chr3L_17534504_17535299;chr3L_17535485_17535689;chr3L_17535913_17535990;chr3L_17536063_17536604 chr3L_17535300_17535484;chr3L_17535690_17535912;chr3L_17535991_17536062 chr3L_17534419_17534503;chr3L_17536605_17536704 1.59 1.18 1.87 0.49 0.00 1.15 3.20 0.61 1.67 3.88 2.67 2.42 0.00 0.00 0.00 2.07 1.41 1.14 0.00 3.70 2.44 3.45 1.05 2.44 1.12 0.00 2.94 3.85 1.48 2.40 2.75 2.60 1.43 1.27 1.83 1.49 2.17 2.61 1.22 2.82 2.44 1.28 2.94 3.20 2.73 2.33 1.18 3.54 0.99 1.10 2.05 1.03 0.00 1.47 0.00 1.52 1.59 3.45 K intron_retention Eip75B,I_chr3L_18008628_18051336 chr3L - chr3L_17949324_17952481 chr3L_17949323_17949324;chr3L_17952481_17952482 chr3L_17948315_17949323;chr3L_17952482_17952720 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention tai,I_chr2L_9191814_9206231 chr2L + chr2L_9234658_9235101 chr2L_9234657_9234658;chr2L_9235101_9235102 chr2L_9233988_9234657;chr2L_9235102_9235263 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.26 0.00 0.00 0.00 0.00 0.00 0.85 0.64 1.40 0.65 0.00 0.48 1.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.90 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Aats-his,EI_chrX_18409716_18414750 chrX + chrX_18413969_18414021 chrX_18413968_18413969;chrX_18414021_18414022 chrX_18413348_18413968;chrX_18414022_18414445 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.97 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 K alternative_acceptor CG15173,RI_chr2L_19044304_19044369 chr2L - chr2L_19044304_19044369 chr2L_19044318_19044369 chr2L_19044370_19044469;chr2L_19044204_19044303 87.50 NA NA 100.00 NA NA 90.00 NA 90.91 NA NA 90.00 NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA NA NA NA NA 78.57 87.50 76.92 85.71 NA NA NA NA NA NA NA 81.82 NA NA NA 88.89 NA 85.71 NA NA NA NA NA NA NA NA NA 77.78 K intron_retention Klp68D chr3L + chr3L_11788799_11788957 chr3L_11788798_11788799;chr3L_11788957_11788958 chr3L_11788723_11788798;chr3L_11788958_11789721 4.12 NA NA NA NA NA 8.33 NA 3.23 NA NA 5.00 NA 12.50 NA 0.00 NA 0.00 NA 10.53 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA K alternative_donor Mtch,RI_chr3L_184729_185366,E_chr3L_185249_186012,EI_chr3L_185308_185366,I_chr3L_185367_185925 chr3L + chr3L_185304_185366;chr3L_185308_185366 chr3L_184729_185366 chr3L_185367_185441;chr3L_184713_184728 0.00 3.85 0.00 2.44 4.35 0.00 0.00 0.00 1.75 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 2.50 0.00 0.00 2.38 5.26 0.00 0.00 3.45 0.00 2.04 0.00 0.00 0.00 3.70 0.00 0.00 0.00 2.50 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N cassette Pvr,I_chr2L_8229001_8230124,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8226607_8230124 chr2L_8226607_8228493;chr2L_8229012_8230124 chr2L_8228494_8229011 chr2L_8226458_8226606;chr2L_8230125_8230224 100.00 100.00 100.00 98.42 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG9153,Myo61F chr3L + chr3L_1314321_1314472 chr3L_1314336_1314472 chr3L_1314473_1314709;chr3L_1314158_1314320 26.67 22.22 20.97 34.92 22.45 26.53 31.67 33.33 26.15 40.00 28.21 25.00 31.82 30.61 33.33 35.29 23.08 30.95 30.91 23.71 23.81 40.00 18.63 18.84 29.27 24.24 28.17 26.47 32.50 15.00 26.37 40.91 26.32 21.52 26.83 35.48 22.73 23.64 29.87 30.34 25.00 27.83 44.44 26.09 25.93 21.05 20.51 30.00 29.00 23.44 28.81 26.67 18.18 29.63 29.82 22.22 27.27 19.61 K alternative_donor RpL29,I_chr2R_17184688_17191389 chr2R + chr2R_17181384_17181558;chr2R_17181380_17181558 chr2R_17181295_17181558 chr2R_17181559_17181664;chr2R_17181294_17181294 0.54 0.60 0.77 0.22 0.80 0.84 0.19 0.45 0.40 0.36 1.04 0.85 0.67 0.24 0.44 0.14 0.44 0.44 0.66 0.54 0.60 0.00 0.00 0.25 1.30 0.96 0.65 0.65 0.51 1.23 0.85 2.34 1.74 0.53 3.03 1.32 0.25 0.34 0.36 0.26 4.35 0.41 0.78 0.51 0.51 2.22 0.32 1.40 0.76 0.20 0.41 0.15 0.94 1.00 0.83 0.29 0.50 3.10 N intron_retention puc,CG7878,I_chr3R_3952846_3953762 chr3R + chr3R_3931818_3936798 chr3R_3931817_3931818;chr3R_3936798_3936799 chr3R_3931090_3931817;chr3R_3936799_3937023 4.35 NA NA 4.35 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention vap,RI_chrX_15897976_15899352,I_chrX_15897976_15899654,I_chrX_15898011_15899654,I_chrX_15898427_15899017,RI_chrX_15898427_15899654,RI_chrX_15899237_15899352,I_chrX_15899237_15899654 chrX - chrX_15898120_15899352 chrX_15898119_15898120;chrX_15899352_15899353 chrX_15897748_15898119;chrX_15899353_15899365 33.33 NA 26.09 NA NA 46.15 30.43 57.14 25.71 NA NA 40.00 NA 14.29 NA 36.36 30.77 NA 19.05 40.00 NA 16.67 NA NA NA 25.00 41.67 NA 54.55 30.77 33.33 NA 37.93 45.45 NA 66.67 NA NA NA 14.81 21.43 33.33 25.00 NA NA 33.33 NA 29.17 41.67 NA NA NA NA NA 33.33 NA NA 46.15 K alternative_acceptor LIMK1,CG1824,I_chrX_12488942_12489000 chrX - chrX_12488926_12489000 chrX_12488942_12489000 chrX_12489001_12489100;chrX_12488842_12488925 3.57 0.00 6.25 2.13 5.00 0.00 0.00 2.38 2.60 5.00 0.00 3.23 3.85 0.00 0.00 3.45 5.56 3.45 6.45 3.39 0.00 5.80 1.67 5.45 9.68 4.17 1.47 7.32 4.84 6.12 5.71 3.57 7.84 2.08 6.90 9.86 4.88 0.00 2.94 4.20 5.77 3.28 5.26 2.90 5.00 1.06 2.04 3.62 4.17 6.67 3.03 5.88 2.63 5.71 2.27 2.50 3.77 3.37 K intron_retention CG3065,mr chr2R + chr2R_19858209_19858278 chr2R_19858208_19858209;chr2R_19858278_19858279 chr2R_19858176_19858208;chr2R_19858279_19859714 90.32 82.05 97.14 91.84 92.59 93.33 85.11 96.00 88.31 100.00 94.74 89.23 96.00 96.77 97.22 97.14 88.46 84.21 97.14 93.67 92.86 73.17 88.24 88.00 86.67 89.47 87.80 97.37 81.08 97.44 95.56 85.37 91.53 87.50 93.10 97.22 84.48 86.49 82.00 90.32 97.06 90.77 84.62 81.40 92.45 89.06 79.55 95.24 90.77 77.14 85.11 89.29 84.62 88.57 91.11 74.47 91.67 98.04 K intron_retention I_chrX_15680663_15680821,Rhp chrX + chrX_15686178_15686242 chrX_15686177_15686178;chrX_15686242_15686243 chrX_15686021_15686177;chrX_15686243_15686490 0.00 0.00 0.00 0.00 0.00 NA 3.03 4.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 6.25 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K jcn_only_AA SWAP,RI_chrX_936466_936762,I_chrX_936466_936835,RI_chrX_936919_937245,RI_chrX_938935_938985,I_chrX_941459_982652 chrX + chrX_936466_936762;chrX_936466_936835 chrX_936466_936966 chrX_936366_936465;chrX_936967_937018 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA NA NA NA N jcn_only_AD CG32594 chrX + chrX_14927496_14927638;chrX_14927033_14927638;chrX_14927381_14927638 chrX_14926607_14927638 chrX_14927639_14928125;chrX_14925576_14926606 95.79 96.05 97.00 86.36 94.39 95.37 98.71 91.67 96.89 97.26 87.43 94.96 99.29 93.65 96.20 92.66 97.14 93.26 91.06 93.72 90.31 81.22 94.66 95.52 97.30 96.77 94.67 92.42 88.94 98.95 95.45 93.07 91.75 97.73 94.19 95.79 97.44 95.93 95.67 93.75 97.06 95.06 95.51 97.02 96.96 95.71 96.43 97.71 96.14 97.37 93.75 97.54 96.69 97.21 95.79 96.70 96.82 99.58 K cassette CG3714,I_chr2L_4190825_4191774,I_chr2L_4191897_4192632,I_chr2L_4192178_4192632,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4190825_4193309 chr2L_4190825_4192632;chr2L_4192969_4193309 chr2L_4192633_4192968 chr2L_4190725_4190824;chr2L_4193310_4193481 21.70 16.88 22.78 24.73 18.18 17.39 22.34 24.75 25.93 15.28 37.21 28.00 24.44 21.15 22.22 21.43 36.84 17.86 24.49 24.32 24.00 40.74 21.76 14.69 12.86 20.31 11.21 19.63 36.00 25.56 32.04 25.00 31.91 19.42 22.73 29.07 28.43 16.52 17.37 30.00 15.45 19.05 22.22 29.58 18.39 21.70 14.43 36.36 21.05 16.67 19.87 24.36 10.14 11.30 18.84 20.41 7.22 14.93 K intron_retention CG8455 chr2L + chr2L_8200281_8200345 chr2L_8200280_8200281;chr2L_8200345_8200346 chr2L_8200102_8200280;chr2L_8200346_8200652 85.00 79.17 93.33 88.57 89.47 93.75 87.50 92.31 86.54 84.62 82.61 90.70 65.00 78.95 81.48 93.75 94.74 91.67 95.00 83.72 83.33 50.00 86.67 76.00 94.12 93.33 82.14 58.82 86.36 73.33 95.00 80.95 90.91 87.23 94.74 95.24 78.95 78.95 84.00 86.21 94.12 85.71 94.12 78.95 80.00 75.00 73.53 90.48 79.07 72.00 73.53 76.47 85.00 68.18 85.71 82.61 80.56 86.36 K intron_retention FKBP59,CG4537 chr2L + chr2L_9889406_9889459 chr2L_9889405_9889406;chr2L_9889459_9889460 chr2L_9889048_9889405;chr2L_9889460_9889570 0.00 0.00 0.00 1.37 0.00 0.55 0.00 0.49 0.69 0.00 0.00 0.22 0.00 0.00 0.80 0.87 0.00 0.78 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.28 0.00 0.00 0.00 0.62 0.00 0.00 0.00 K intron_retention CG7145,I_chr3L_21832928_21833150,I_chr3L_21832932_21833106 chr3L - chr3L_21832932_21834330 chr3L_21832931_21832932;chr3L_21834330_21834331 chr3L_21832832_21832931;chr3L_21834331_21834464 48.00 NA NA 63.64 NA 60.00 50.00 35.71 42.86 NA NA 46.67 NA NA NA 35.71 NA NA NA 48.00 NA NA 53.33 NA NA NA NA NA 50.00 NA 41.67 NA 81.82 NA NA NA NA NA NA 52.63 NA 50.00 NA 30.77 NA NA NA 46.67 28.57 NA 60.00 NA NA NA 41.67 45.45 NA 58.33 K alternative_acceptor CG8414,Ric chr2R - chr2R_11989269_11989339 chr2R_11989287_11989339 chr2R_11989340_11989555;chr2R_11987199_11989268 100.00 NA NA 90.00 NA NA 92.86 93.75 100.00 NA NA 100.00 NA NA NA 93.33 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 93.75 94.12 NA NA NA NA NA NA NA NA 100.00 K intron_retention sll chr3R + chr3R_13432052_13432099 chr3R_13432051_13432052;chr3R_13432099_13432100 chr3R_13431835_13432051;chr3R_13432100_13432287 12.00 NA NA NA NA NA NA NA NA NA NA 5.56 NA NA NA NA NA NA NA NA NA NA 12.00 NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Pdi,RE_chr3L_15131606_15135404,I_chr3L_15132625_15133292 chr3L - chr3L_15132625_15135399 chr3L_15132624_15132625;chr3L_15135399_15135400 chr3L_15132525_15132624;chr3L_15135400_15135940 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.08 0.00 0.13 0.00 0.00 0.00 0.00 0.19 0.14 0.00 0.00 0.00 0.09 0.46 0.15 0.18 0.00 0.23 0.00 0.08 0.20 0.08 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.06 0.12 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.07 K alternative_acceptor Zyx102EF,I_chr4_1079131_1080044,I_chr4_1079946_1080044,RI_chr4_1079959_1080044,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1079978_1080044;chr4_1079915_1080044 chr4_1079959_1080044 chr4_1080045_1080072;chr4_1079859_1079914 4.00 0.00 14.29 8.16 8.33 0.00 10.00 3.85 3.45 NA 5.88 10.26 4.17 4.76 12.50 5.17 0.00 5.26 7.14 6.98 8.33 0.00 0.00 7.14 0.00 11.11 0.00 10.00 NA 0.00 4.00 9.09 0.00 4.00 0.00 11.76 0.00 10.00 0.00 0.00 0.00 6.67 3.70 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 6.67 11.11 0.00 7.41 7.69 5.56 0.00 K alternative_donor Yippee,RI_chrX_13280465_13280617 chrX - chrX_13280465_13280621 chrX_13280465_13280617 chrX_13280365_13280464;chrX_13280622_13280717 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 1.59 NA 0.00 0.00 4.17 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 1.64 0.00 2.63 2.56 3.57 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG2162,I_chr3L_3039516_3039562 chr3L + chr3L_3039516_3039578 chr3L_3039516_3039562 chr3L_3039416_3039515;chr3L_3039579_3039662 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.99 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 K intron_retention CE_chrX_19156179_19164138,CG8010,CG32536 chrX - chrX_19161285_19161350 chrX_19161284_19161285;chrX_19161350_19161351 chrX_19160569_19161284;chrX_19161351_19162073 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.92 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.39 0.00 K intron_retention RhoGEF3,I_chr3L_298140_298220 chr3L + chr3L_301105_301162 chr3L_301104_301105;chr3L_301162_301163 chr3L_300901_301104;chr3L_301163_301681 100.00 100.00 98.44 100.00 98.04 98.31 100.00 98.94 100.00 97.44 98.04 100.00 100.00 100.00 98.36 100.00 100.00 97.92 100.00 99.43 100.00 100.00 100.00 98.67 100.00 100.00 100.00 100.00 100.00 100.00 98.55 100.00 98.18 100.00 98.15 100.00 100.00 98.39 98.96 99.06 100.00 99.27 100.00 100.00 97.62 100.00 97.78 98.75 100.00 98.67 98.82 98.28 100.00 100.00 100.00 100.00 100.00 100.00 N jcn_only_AD cryptocephal,noncoding_4181,I_chr2L_21312209_21314626 chr2L + chr2L_21311018_21311192 chr2L_21311033_21311192 chr2L_21311193_21311214;chr2L_21310948_21311017 54.43 59.21 62.72 48.45 64.10 56.59 45.52 63.12 61.25 57.41 54.73 51.92 50.61 57.14 46.19 68.55 67.26 54.70 53.85 47.25 51.43 45.35 47.59 49.77 50.00 46.79 42.35 43.84 60.87 59.56 53.66 59.49 56.00 53.57 57.36 67.36 60.82 53.80 58.14 59.90 41.79 57.91 67.12 51.08 43.33 58.37 62.50 64.10 53.13 54.23 53.91 52.63 53.75 54.43 54.67 65.33 43.98 50.47 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814894;chr2R_2815654_2816013;chr2R_2816342_2816577;chr2R_2816779_2817354;chr2R_2817604_2817753 chr2R_2814895_2815653;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817355_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention RI_chrX_9050411_9050612,Ost48,CG9034 chrX - chrX_9052249_9052322 chrX_9052248_9052249;chrX_9052322_9052323 chrX_9050964_9052248;chrX_9052323_9052536 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.37 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.91 0.73 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.41 0.00 0.00 0.38 0.23 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.68 0.00 0.00 K jcn_only_AA Pink1,F_chrX_6578108_6578160,F_chrX_6578108_6578165,F_chrX_6578108_6578251,I_chrX_6578115_6578251 chrX + chrX_6578104_6578251;chrX_6578104_6578165 chrX_6578104_6578160 chrX_6578015_6578103;chrX_6578252_6578260 85.00 NA NA NA NA NA NA NA 92.31 NA NA 85.00 NA NA NA 71.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.24 NA 76.92 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389272_2395659 chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2393243;chrX_2393712_2394269;chrX_2394396_2395151;chrX_2395275_2395659 chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664;chrX_2393244_2393711;chrX_2394270_2394395;chrX_2395152_2395274 chrX_2389172_2389271;chrX_2395660_2395759 20.00 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Pof chr2R + chr2R_20558563_20558620 chr2R_20558562_20558563;chr2R_20558620_20558621 chr2R_20558371_20558562;chr2R_20558621_20559041 3.57 0.00 3.57 8.33 NA NA 7.41 6.67 4.55 NA NA 5.41 NA 12.50 12.50 12.50 NA NA 4.76 8.51 12.50 NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA 4.76 8.33 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 9.09 6.45 0.00 NA 0.00 NA 19.05 NA 0.00 3.85 K cassette Tm1,I_chr3R_11120969_11125831,I_chr3R_11121267_11122312,I_chr3R_11121267_11124998 chr3R + chr3R_11120969_11125831;chr3R_11120969_11122312 chr3R_11120969_11121148;chr3R_11121267_11125831,chr3R_11121267_11122312 chr3R_11121149_11121266 chr3R_11120869_11120968;chr3R_11125832_11125902 73.44 78.12 74.24 80.22 82.11 79.80 81.18 79.19 80.33 77.33 78.07 75.00 81.91 75.45 73.44 81.71 78.90 76.32 83.19 79.79 80.77 73.81 64.71 66.85 63.37 75.65 67.33 64.38 70.37 52.87 78.05 74.12 66.36 83.01 60.55 59.65 71.73 66.90 62.59 68.21 65.65 77.37 77.55 70.66 71.96 66.25 70.27 76.92 70.83 65.07 64.25 70.80 52.03 63.64 81.48 63.11 51.49 65.52 K cassette CG5091,I_chr2L_10381111_10381376 chr2L + chr2L_10381111_10381376 chr2L_10381111_10381162;chr2L_10381323_10381376 chr2L_10381163_10381322 chr2L_10381011_10381110;chr2L_10381377_10381476 100.00 100.00 100.00 100.00 100.00 97.87 98.82 100.00 98.75 100.00 97.78 98.89 100.00 100.00 98.36 98.94 98.11 100.00 98.73 99.26 100.00 100.00 98.00 100.00 96.88 98.25 100.00 100.00 100.00 100.00 98.85 100.00 98.15 100.00 97.44 100.00 100.00 97.44 100.00 98.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention qkr58E-3,I_chr2R_18300846_18301656 chr2R - chr2R_18297526_18297815 chr2R_18297525_18297526;chr2R_18297815_18297816 chr2R_18297000_18297525;chr2R_18297816_18297901 1.30 5.26 3.12 4.05 4.55 3.23 1.67 6.12 2.94 0.00 6.25 3.90 3.33 5.71 0.00 3.39 0.00 9.09 2.94 2.70 0.00 2.67 5.33 2.78 0.00 5.41 0.00 4.88 0.00 1.67 0.00 0.00 0.00 8.00 0.00 0.00 0.00 NA 0.00 0.00 1.23 4.05 0.00 0.00 0.00 0.94 1.61 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 1.92 1.37 0.00 N alternative_acceptor CG42394,noncoding_15936,E_chr3R_6675742_6676058 chr3R + chr3R_6677211_6677344;chr3R_6677211_6677270 chr3R_6677211_6677262 chr3R_6677007_6677210;chr3R_6677345_6677430 20.45 22.22 19.67 22.78 5.26 21.15 21.14 19.39 24.48 0.00 17.95 18.64 24.66 21.05 24.53 25.49 24.64 21.95 28.12 18.25 3.12 2.38 23.68 17.31 12.00 32.61 21.57 15.38 7.69 4.76 21.33 24.07 16.33 19.26 24.49 12.90 16.67 30.00 3.33 13.79 25.93 20.35 20.69 22.64 17.86 22.68 16.07 27.45 22.36 25.00 16.67 22.86 13.33 13.73 28.12 20.45 17.05 20.00 K alternative_donor CG2924,I_chrX_2163288_2163676,I_chrX_2163738_2163863,I_chrX_2163738_2164440,I_chrX_2163738_2164560,I_chrX_2168373_2168893 chrX - chrX_2163738_2164440;chrX_2163738_2164670 chrX_2163738_2164731 chrX_2163677_2163737;chrX_2164732_2164736 76.39 NA NA 72.73 NA NA 80.00 92.31 66.67 NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 77.78 NA NA NA NA NA NA NA 78.57 NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA K alternative_acceptor UbcD6,RI_chr3R_776749_776832 chr3R - chr3R_776475_776832 chr3R_776749_776832 chr3R_776833_776932;chr3R_776189_776474 80.00 55.56 100.00 88.89 75.00 57.14 81.82 85.71 91.67 NA NA 71.43 85.71 100.00 80.00 90.00 66.67 50.00 80.00 80.00 57.14 90.91 61.54 60.00 80.00 NA 80.00 83.33 50.00 83.33 77.78 NA 100.00 73.33 85.71 85.71 83.33 83.33 85.71 75.00 80.00 76.47 NA 46.15 75.00 88.89 77.78 83.33 72.73 75.00 53.33 62.50 NA 80.00 62.50 83.33 87.50 75.00 K alternative_acceptor CG15118,I_chr2R_15024324_15024455 chr2R - chr2R_15024576_15024628 chr2R_15024582_15024628 chr2R_15024629_15024653;chr2R_15024456_15024575 94.72 90.91 95.00 96.43 81.25 100.00 94.44 94.44 87.10 NA 100.00 89.29 84.62 91.67 100.00 94.12 100.00 91.67 90.91 91.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 87.50 93.75 75.00 100.00 93.33 NA 100.00 93.75 100.00 NA 93.75 NA 92.31 84.62 100.00 83.33 77.78 NA NA 92.59 91.67 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA K cassette glo,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7642480_7643727 chr3R_7642480_7642915;chr3R_7643061_7643727 chr3R_7642916_7643060 chr3R_7642334_7642479;chr3R_7643728_7643827 89.47 89.47 93.83 72.73 89.29 90.36 90.00 91.49 91.30 69.86 91.67 87.94 90.91 91.46 90.00 93.86 94.59 99.88 92.55 92.57 93.44 94.12 84.31 84.03 76.83 94.74 78.63 92.22 79.52 87.04 61.11 90.32 91.30 92.54 85.39 90.41 80.47 91.46 82.01 87.56 91.30 92.66 90.79 85.00 87.04 90.21 86.61 87.67 86.87 86.73 81.82 84.42 85.26 81.82 95.58 83.65 86.29 89.41 K intron_retention Aats-leu chr3L + chr3L_4826043_4826094 chr3L_4826042_4826043;chr3L_4826094_4826095 chr3L_4825871_4826042;chr3L_4826095_4827886 0.00 NA NA 10.00 NA NA 5.88 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 3.23 NA 4.76 0.00 4.00 0.00 NA 10.53 20.00 NA 0.00 NA NA 3.45 0.00 4.76 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 7.69 0.00 NA 0.00 NA NA NA NA NA 0.00 12.50 K intron_retention Tao-1,E_chrX_19467010_19469645 chrX - chrX_19467498_19467636 chrX_19467497_19467498;chrX_19467636_19467637 chrX_19467324_19467497;chrX_19467637_19467893 90.65 78.57 NA 94.44 NA 100.00 91.67 NA 95.00 92.86 100.00 100.00 NA NA 90.00 NA NA 100.00 NA 91.30 NA 89.29 94.44 80.00 86.67 100.00 80.00 58.82 52.63 76.92 100.00 85.71 82.61 92.86 90.00 45.45 95.24 91.67 93.33 88.46 83.33 94.12 NA 92.31 100.00 70.00 NA 88.24 84.62 82.35 92.31 NA NA 91.67 90.00 NA 88.89 NA K intron_retention l(1)dd4 chrX - chrX_13636275_13636348 chrX_13636274_13636275;chrX_13636348_13636349 chrX_13636082_13636274;chrX_13636349_13637767 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Crk,RI_chr4_231302_233315,I_chr4_231307_232253 chr4 + chr4_232609_233253 chr4_232609_232740;chr4_232901_233253 chr4_232741_232900 chr4_232506_232608;chr4_233254_233355 3.12 2.70 3.12 1.56 NA 5.00 3.28 4.76 4.00 7.14 13.04 1.45 22.58 2.94 3.23 2.60 6.25 2.38 3.39 7.14 3.57 7.14 3.12 3.45 0.00 0.00 3.03 0.00 0.00 2.70 2.94 2.78 1.82 3.49 0.00 6.45 NA 0.00 4.76 6.00 2.56 2.78 2.13 3.70 6.25 4.29 2.50 3.51 2.41 3.85 2.56 4.17 0.00 3.23 4.76 1.96 3.23 2.50 K alternative_donor CG7115,I_chr2L_7821309_7822922,I_chr2L_7821387_7822675,I_chr2L_7821643_7822641,I_chr2L_7821649_7822675,RI_chr2L_7822057_7822675 chr2L + chr2L_7821649_7822641 chr2L_7822057_7822641 chr2L_7822642_7822741;chr2L_7821549_7821648 90.91 100.00 88.89 83.33 80.00 87.50 82.35 86.67 92.00 100.00 100.00 94.74 42.86 90.91 100.00 95.00 100.00 100.00 100.00 90.91 85.71 100.00 83.33 73.33 85.71 100.00 90.91 85.71 100.00 100.00 90.00 100.00 100.00 94.12 81.82 75.00 87.50 87.50 70.00 93.75 100.00 90.48 100.00 90.91 100.00 100.00 76.92 100.00 92.86 100.00 90.91 90.00 85.71 85.71 91.67 100.00 88.89 100.00 K alternative_donor CG7795,F_chr2L_8317763_8317836 chr2L - chr2L_8317355_8317633 chr2L_8317355_8317523 chr2L_8316889_8317354;chr2L_8317634_8317780 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CaMKII,I_chr4_1059085_1060638,I_chr4_1059085_1065781,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1059064_1060638;chr4_1059085_1060638 chr4_1059061_1060638 chr4_1060639_1060704;chr4_1059054_1059060 53.20 NA NA 44.00 NA NA 37.50 61.54 50.00 NA NA 54.55 NA NA NA 58.06 NA NA 51.61 77.78 NA NA 50.00 NA NA NA NA NA NA NA 53.33 NA NA 55.56 NA NA NA NA NA 46.15 NA 61.54 NA NA NA NA NA NA 53.06 NA NA NA NA NA 66.67 NA NA 51.72 K intron_retention CG6236 chr3R - chr3R_11153785_11153849 chr3R_11153784_11153785;chr3R_11153849_11153850 chr3R_11153649_11153784;chr3R_11153850_11153988 0.00 4.35 NA 0.00 NA NA 0.00 6.06 2.17 0.00 NA 0.00 NA 0.00 NA 9.09 NA NA NA 2.00 NA 0.00 0.00 4.76 NA NA 13.04 16.67 0.00 6.90 NA 0.00 3.92 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 NA 2.94 0.00 0.00 0.00 3.23 5.26 11.11 4.00 0.00 0.00 0.00 NA 0.00 5.00 3.12 K alternative_acceptor Taf1 chr3R + chr3R_2480387_2480710 chr3R_2480387_2480707 chr3R_2480192_2480386;chr3R_2480711_2480724 13.04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention MBD-R2 chr3R - chr3R_8181778_8181917 chr3R_8181777_8181778;chr3R_8181917_8181918 chr3R_8180641_8181777;chr3R_8181918_8181961 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.80 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG31908 chr2L - chr2L_7026636_7026723 chr2L_7026635_7026636;chr2L_7026723_7026724 chr2L_7026157_7026635;chr2L_7026724_7026978 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.92 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.86 0.00 0.00 0.00 0.00 0.52 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention hopscotch chrX - chrX_11258837_11259065 chrX_11258836_11258837;chrX_11259065_11259066 chrX_11258517_11258836;chrX_11259066_11259272 0.00 0.00 0.00 0.00 0.00 5.00 1.32 0.00 1.80 0.00 0.00 3.41 0.00 0.00 0.00 2.47 0.00 0.00 4.44 0.93 0.00 20.00 0.00 0.00 0.00 0.00 0.00 0.00 6.52 3.39 3.77 0.00 5.13 0.00 0.00 0.00 1.37 0.00 3.70 2.22 2.94 1.11 4.88 1.54 0.00 0.00 0.00 4.55 2.74 0.00 1.54 0.00 0.00 0.00 1.96 0.00 0.00 7.41 K jcn_only_AD CG34039 chr3L + chr3L_14553189_14554958 chr3L_14553919_14554958 chr3L_14554959_14555099;chr3L_14553171_14553188 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 3.70 NA NA NA NA NA NA 4.35 NA NA NA NA NA 4.76 NA 4.76 NA K intron_retention unk,I_chr3R_18980963_18981530 chr3R - chr3R_18981272_18981530 chr3R_18981271_18981272;chr3R_18981530_18981531 chr3R_18981247_18981271;chr3R_18981531_18981630 6.90 NA NA NA NA NA NA 25.00 5.26 NA NA NA NA NA NA NA NA NA NA 17.65 NA 6.67 NA NA NA NA NA NA NA NA NA NA 19.35 NA NA 7.14 NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N cassette unc-13,I_chr4_897821_902468,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_897821_903242;chr4_897821_902468;chr4_897821_903586 chr4_897821_899476;chr4_899619_903242,chr4_899619_903586,chr4_899619_902468 chr4_899477_899618 chr4_897721_897820;chr4_903587_903686 65.38 65.00 83.33 28.33 65.38 67.86 34.21 40.62 61.33 85.71 87.50 50.00 80.00 68.97 65.71 77.55 73.91 80.95 69.70 62.34 87.50 42.22 48.72 53.85 45.95 70.73 40.00 45.45 50.00 60.71 57.50 73.33 72.73 64.91 64.71 54.55 53.85 92.86 64.00 78.43 53.85 66.07 68.97 54.55 69.23 68.75 71.43 64.00 65.08 73.33 60.47 73.91 90.00 83.33 71.88 58.82 53.33 81.82 K intron_retention Acon,I_chr2L_21168805_21168878,I_chr2L_21168805_21170166 chr2L + chr2L_21168805_21170190 chr2L_21168804_21168805;chr2L_21170190_21170191 chr2L_21168705_21168804;chr2L_21170191_21170266 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Dystrophin,noncoding_17759,I_chr3R_15289404_15290179 chr3R + chr3R_15289404_15290179 chr3R_15289437_15290179 chr3R_15290180_15290213;chr3R_15289382_15289403 77.78 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 77.78 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2395659 chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664 chrX_2387149_2387248;chrX_2395660_2395759 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K intron_retention noncoding_18164,F_chr3R_17192061_17200781,RI_chr3R_17193489_17193631 chr3R + chr3R_17193416_17193631 chr3R_17193415_17193416;chr3R_17193631_17193632 chr3R_17193389_17193415;chr3R_17193632_17193731 22.22 14.29 40.00 17.24 NA 25.00 13.04 22.73 16.67 NA NA 21.43 33.33 33.33 20.00 24.14 NA 30.77 12.50 33.33 NA NA 14.29 NA NA 20.00 25.00 NA NA NA 7.04 26.67 20.00 23.81 16.67 NA NA NA 11.76 28.57 25.00 21.88 22.22 12.50 30.00 33.33 25.00 34.78 23.53 8.33 25.00 NA NA 21.43 9.52 14.29 12.50 31.03 K intron_retention Top1 chrX + chrX_15219993_15220377 chrX_15219992_15219993;chrX_15220377_15220378 chrX_15219849_15219992;chrX_15220378_15220515 100.00 100.00 98.67 100.00 100.00 100.00 100.00 100.00 99.28 100.00 100.00 100.00 100.00 98.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.86 98.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.77 98.45 100.00 100.00 99.01 100.00 100.00 98.59 98.70 100.00 100.00 99.24 K alternative_donor CG8121,RI_chr3R_5183458_5183705 chr3R + chr3R_5160922_5161218 chr3R_5160975_5161218 chr3R_5161219_5161357;chr3R_5160915_5160921 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 N alternative_acceptor CG3287,I_chr2R_2700203_2700285 chr2R + chr2R_2701259_2702564 chr2R_2701259_2701541 chr2R_2700678_2701258;chr2R_2702565_2703029 73.39 76.00 70.83 79.45 73.75 68.97 74.63 74.56 70.10 71.43 81.33 79.10 79.45 68.42 73.08 68.35 71.43 71.84 73.77 67.13 80.52 56.07 63.92 73.39 67.47 68.87 76.79 81.58 59.46 71.91 72.73 87.01 70.16 76.77 75.90 71.08 70.59 63.64 69.84 79.25 80.00 67.46 68.54 75.00 85.71 83.85 83.90 69.03 72.22 80.77 68.42 67.82 78.87 80.43 75.22 81.42 84.11 87.39 K jcn_only_AA CG31715,I_chr2L_10341933_10342151,I_chr2L_10341933_10342155 chr2L + chr2L_10341933_10342155;chr2L_10341933_10342149 chr2L_10341933_10342151 chr2L_10341833_10341932;chr2L_10342156_10342233 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.84 0.38 0.00 0.00 0.52 0.00 0.00 1.33 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 1.77 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 3.39 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.78 0.00 0.00 0.87 0.00 0.99 0.00 0.00 1.09 0.70 0.00 0.00 0.00 K alternative_donor EI_chrX_20347839_20348139,DMG4-MB6.chrX.37.001,RI_chrX_20380495_20381649 chrX - chrX_20380495_20381649 chrX_20380495_20381545 chrX_20380395_20380494;chrX_20381650_20381671 94.12 NA 85.71 92.86 NA NA 100.00 94.12 84.00 NA 100.00 93.75 70.00 88.89 70.00 81.25 85.71 100.00 92.86 93.75 NA 100.00 100.00 NA 100.00 NA NA NA 100.00 100.00 81.82 100.00 87.50 95.65 83.33 NA 100.00 NA NA 100.00 100.00 81.25 90.00 100.00 100.00 100.00 NA 90.91 84.62 85.71 NA 100.00 100.00 NA 88.89 NA 100.00 100.00 K intron_retention Trxr-1 chrX + chrX_8140770_8140840 chrX_8140769_8140770;chrX_8140840_8140841 chrX_8140543_8140769;chrX_8140841_8142070 0.00 0.00 0.00 0.33 0.00 0.46 0.00 0.00 0.43 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.17 0.16 0.19 0.00 0.00 0.88 1.29 0.73 0.00 0.29 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.32 0.40 0.00 0.22 0.00 0.00 0.00 0.00 0.29 0.00 0.37 0.00 0.00 0.00 0.38 0.00 0.00 0.00 K alternative_last_exon CG34398 chr2L + chr2L_8930397_8931081 chr2L_8930397_8930483 chr2L_8931082_8931983 chr2L_8930484_8930550 chr2L_8930312_8930396 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention vib,RI_chr3R_15051793_15052186 chr3R - chr3R_15044234_15044405 chr3R_15044233_15044234;chr3R_15044405_15044406 chr3R_15044124_15044233;chr3R_15044406_15044486 32.05 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.53 NA NA NA NA NA NA 30.77 35.29 NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG3246,msl-2 chr2L - chr2L_3461381_3461437 chr2L_3461380_3461381;chr2L_3461437_3461438 chr2L_3460315_3461380;chr2L_3461438_3461706 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA K intron_retention Rbsn-5 chr2L + chr2L_8161428_8161492 chr2L_8161427_8161428;chr2L_8161492_8161493 chr2L_8160826_8161427;chr2L_8161493_8161856 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD mam,I_chr2R_9898687_9913084 chr2R + chr2R_9878843_9879482 chr2R_9878998_9879482 chr2R_9879483_9879609;chr2R_9878727_9878842 95.22 NA NA 90.48 NA NA 87.88 98.00 96.43 NA NA 97.06 96.00 NA NA 96.30 NA 95.00 95.45 100.00 NA NA 100.00 NA NA NA 95.45 NA NA NA NA NA NA 92.00 90.48 95.00 NA NA NA NA NA 72.41 NA NA NA NA 90.91 NA 93.22 NA 90.00 NA NA NA 100.00 NA NA NA K intron_retention CG13745,I_chr2R_4825500_4825702 chr2R - chr2R_4826319_4826377 chr2R_4826318_4826319;chr2R_4826377_4826378 chr2R_4826209_4826318;chr2R_4826378_4826613 0.00 0.00 0.00 3.45 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention unc-5,E_chr2R_11238100_11240757,I_chr2R_11252444_11252570 chr2R + chr2R_11238100_11244325 chr2R_11238099_11238100;chr2R_11244325_11244326 chr2R_11238000_11238099;chr2R_11244326_11244514 5.63 4.55 4.76 8.47 20.00 0.00 23.53 5.71 12.73 5.88 4.55 12.50 NA 14.29 0.00 12.50 16.67 NA 13.33 10.71 10.53 16.22 3.77 4.65 10.71 NA 8.33 12.50 20.00 8.82 0.00 NA 3.57 8.33 0.00 5.56 5.00 0.00 2.94 4.55 NA 5.00 NA 5.56 NA 0.00 9.09 11.11 8.00 0.00 0.00 10.00 0.00 NA 4.55 NA 0.00 0.00 K alternative_donor gw,RI_chr4_679135_679703,I_chr4_679135_680299,RI_chr4_679135_680693,I_chr4_679135_681047,I_chr4_679135_681671 chr4 - chr4_679135_680185;chr4_679135_680546;chr4_679135_680270;chr4_679135_680503 chr4_679135_680594 chr4_679035_679134;chr4_680595_680603 0.00 0.00 20.00 6.67 0.00 0.00 5.88 0.00 0.00 NA 20.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 25.00 0.00 0.00 NA 0.00 0.00 NA 0.00 5.56 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 33.33 NA 33.33 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention CG11266,RI_chr2L_7033019_7034180,RI_chr2L_7033019_7034764,I_chr2L_7034274_7034764,I_chr2L_7034274_7035406,RI_chr2L_7034911_7035074,I_chr2L_7051093_7051366 chr2L + chr2L_7034274_7034483 chr2L_7034273_7034274;chr2L_7034483_7034484 chr2L_7034211_7034273;chr2L_7034484_7034693 7.92 NA NA NA NA NA NA 27.78 28.57 NA NA 21.43 33.33 NA NA NA NA NA NA 7.14 NA NA NA NA NA NA NA NA NA 0.00 8.70 NA 0.00 20.00 NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 2.33 29.17 NA NA NA NA NA NA NA NA 0.00 K alternative_acceptor AT25722,CG3376 chr2R + chr2R_20151869_20152304 chr2R_20151869_20152108 chr2R_20151683_20151868;chr2R_20152305_20152726 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.28 100.00 97.56 100.00 99.32 100.00 100.00 98.67 100.00 100.00 100.00 100.00 99.34 100.00 100.00 100.00 98.36 100.00 96.43 98.00 100.00 97.73 100.00 98.90 100.00 97.73 100.00 97.78 95.00 100.00 100.00 100.00 100.00 98.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.65 K intron_retention CG3662,I_chr2L_822032_822857 chr2L + chr2L_824138_824218 chr2L_824137_824138;chr2L_824218_824219 chr2L_823637_824137;chr2L_824219_824354 88.33 90.20 80.68 96.43 82.69 81.08 89.36 86.47 92.54 97.56 88.00 88.94 86.26 87.50 86.27 88.52 87.36 84.93 82.91 85.84 83.87 68.93 94.53 85.29 93.44 90.36 83.47 71.64 90.16 89.41 80.17 88.57 94.59 86.86 85.11 97.39 86.67 85.94 70.37 86.59 92.31 87.21 91.57 86.51 89.36 92.50 90.32 93.88 89.90 84.50 89.57 90.91 89.77 90.08 84.03 88.33 93.44 92.09 K intron_retention Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16107944_16108768 chr3L_16107943_16107944;chr3L_16108768_16108769 chr3L_16107894_16107943;chr3L_16108769_16108930 20.52 NA 23.08 NA NA NA NA NA 21.43 6.90 4.17 31.25 NA NA NA 36.36 NA NA NA 26.67 23.53 17.86 20.00 NA NA 25.00 20.00 15.79 0.00 NA NA NA 33.33 NA NA NA 15.38 6.25 8.33 21.05 NA NA NA 22.22 25.00 NA NA 30.00 25.00 NA 0.00 NA 0.00 NA NA NA NA 17.65 K intron_retention faf,RI_chr3R_27603474_27603893,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27612432_27612489 chr3R_27612431_27612432;chr3R_27612489_27612490 chr3R_27612080_27612431;chr3R_27612490_27612749 0.00 0.00 1.28 0.93 0.00 0.00 0.00 1.56 2.21 0.00 0.00 1.47 0.00 2.63 1.27 0.00 0.00 0.00 0.00 2.88 0.00 5.30 0.71 1.60 2.50 0.00 7.53 7.55 0.00 3.92 0.00 0.00 3.09 0.00 0.00 0.00 0.83 0.00 1.54 1.22 0.00 1.11 0.00 1.94 0.00 0.00 0.00 1.35 1.47 0.00 1.55 0.00 0.00 0.00 2.08 0.00 1.04 3.12 K alternative_acceptor X11L,chrX_17493783_17494244.0,RE_chrX_17497873_17498103 chrX + chrX_17493713_17494809 chrX_17493713_17494805 chrX_17493665_17493712;chrX_17494810_17495337 93.33 100.00 100.00 93.33 100.00 90.00 93.33 87.50 100.00 100.00 90.00 88.24 100.00 78.57 84.62 100.00 NA 100.00 91.67 92.31 100.00 96.43 100.00 92.31 100.00 100.00 91.67 90.91 91.67 93.75 90.00 100.00 100.00 88.89 91.67 100.00 92.31 94.12 94.44 93.10 NA 95.24 100.00 100.00 100.00 91.67 92.86 93.75 92.00 88.89 92.31 100.00 90.00 91.67 100.00 100.00 91.67 87.50 K alternative_acceptor CG41099,I_chr3RHet_1688173_1688235,I_chr3RHet_1688505_1705884,RI_chr3RHet_1703294_1705884 chr3RHet - chr3RHet_1688173_1688235 chr3RHet_1688184_1688235 chr3RHet_1688236_1688330;chr3RHet_1688073_1688172 92.90 NA NA 94.12 NA NA 91.67 82.61 95.24 NA NA 100.00 NA 100.00 NA 89.47 NA NA 91.67 100.00 NA NA 88.89 NA NA 88.89 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 90.00 90.91 NA NA 100.00 NA NA 95.00 NA NA NA NA NA 90.00 NA 100.00 87.50 K jcn_only_AD CG10565,I_chr3L_21128610_21128680 chr3L - chr3L_21128610_21128717 chr3L_21128610_21128680 chr3L_21128510_21128609;chr3L_21128718_21128780 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.46 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.65 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.50 0.00 0.00 0.00 0.26 K intron_retention CG1671 chr2R + chr2R_5735656_5735714 chr2R_5735655_5735656;chr2R_5735714_5735715 chr2R_5735635_5735655;chr2R_5735715_5738323 0.00 0.00 0.00 23.53 0.00 5.56 4.17 4.76 9.52 0.00 NA 10.00 0.00 NA 0.00 7.41 0.00 NA 8.33 5.88 NA 0.00 0.00 0.00 14.29 0.00 25.00 13.33 0.00 NA 13.79 0.00 0.00 8.57 7.14 0.00 0.00 0.00 0.00 2.00 NA 12.00 0.00 6.67 9.52 NA NA 3.70 0.00 7.69 0.00 0.00 0.00 0.00 7.69 5.56 4.55 0.00 K intron_retention spn-E,I_chr3R_11663703_11663759 chr3R + chr3R_11667769_11667824 chr3R_11667768_11667769;chr3R_11667824_11667825 chr3R_11667179_11667768;chr3R_11667825_11667972 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 5.26 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 3.70 K jcn_only_AA moody chrX - chrX_1939981_1940048 chrX_1939983_1940048 chrX_1940049_1940544;chrX_1938363_1939980 47.50 42.86 62.96 65.91 39.02 51.85 36.67 47.50 54.29 41.18 22.22 50.98 NA 66.67 57.58 56.00 34.62 44.83 55.00 55.56 48.00 49.18 38.16 37.65 39.47 47.83 50.00 58.06 51.35 41.67 43.48 44.12 39.13 54.00 37.21 51.72 50.35 46.51 48.31 48.48 52.38 52.11 39.13 42.03 50.00 35.14 35.48 48.00 40.28 46.15 47.37 58.82 45.83 37.04 34.15 57.14 45.45 NA K intron_retention CG11138 chrX - chrX_12467443_12467757 chrX_12467442_12467443;chrX_12467757_12467758 chrX_12466805_12467442;chrX_12467758_12467847 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 8.57 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG33981,fab1 chr2R - chr2R_13668785_13668845 chr2R_13668784_13668785;chr2R_13668845_13668846 chr2R_13668106_13668784;chr2R_13668846_13668992 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.00 NA 0.00 0.00 0.00 0.00 0.00 3.45 5.56 5.88 0.00 0.00 0.00 0.00 4.35 5.56 0.00 3.57 0.00 0.00 0.00 NA 0.00 NA 6.67 0.00 NA NA 0.00 0.00 7.69 0.00 NA NA NA 0.00 NA NA 0.00 K intron_retention rictor chrX - chrX_19151392_19151451 chrX_19151391_19151392;chrX_19151451_19151452 chrX_19151324_19151391;chrX_19151452_19152187 95.83 100.00 94.44 100.00 93.75 93.75 100.00 95.83 100.00 91.67 100.00 96.97 94.44 91.67 95.45 100.00 93.75 100.00 100.00 97.30 90.00 91.43 100.00 100.00 100.00 100.00 96.30 95.00 92.86 95.45 94.44 100.00 92.31 95.83 96.30 100.00 97.73 93.55 100.00 100.00 91.67 100.00 100.00 100.00 88.89 91.67 94.74 93.75 96.88 91.67 97.62 95.00 90.00 100.00 95.24 100.00 92.86 87.50 K intron_retention dorsal,RI_chr2L_17438018_17439189,FI_chr2L_17449369_17450215,noncoding_3500,RI_chr2L_17450002_17450219 chr2L - chr2L_17449369_17450215 chr2L_17449368_17449369;chr2L_17450215_17450216 chr2L_17449296_17449368;chr2L_17450216_17450315 87.50 NA NA NA NA NA 87.50 80.00 NA NA NA 90.91 NA NA NA 93.33 NA NA 87.50 80.00 NA NA 63.64 NA NA NA 90.00 NA 80.00 NA 88.89 NA 66.67 90.91 NA NA NA NA NA 80.00 NA NA NA NA NA NA NA 60.00 91.67 NA NA NA NA NA NA NA NA NA K intron_retention sda,I_chr3R_22742285_22742350,RI_chr3R_22750984_22752737 chr3R + chr3R_22764354_22764654 chr3R_22764353_22764354;chr3R_22764654_22764655 chr3R_22764167_22764353;chr3R_22764655_22764972 0.00 0.00 NA 6.45 NA 7.69 0.00 0.00 0.00 0.00 NA 0.00 NA NA 4.76 NA NA NA 0.00 4.65 NA 5.51 0.00 0.00 2.00 NA 2.38 2.67 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 3.70 0.00 1.75 1.98 0.00 1.79 7.69 1.10 0.00 0.00 0.00 0.00 2.94 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CREF_chr3R_5589662_5589762,CG8481 chr3R + chr3R_5593863_5594644;chr3R_5594297_5594644 chr3R_5594297_5594466,chr3R_5593863_5594466;chr3R_5594561_5594644 chr3R_5594467_5594560 chr3R_5593583_5593862;chr3R_5594645_5594706 12.00 11.11 17.31 9.26 14.29 13.16 6.78 14.58 10.00 10.00 19.35 9.21 12.50 7.69 12.77 14.29 16.00 13.33 10.53 11.32 11.63 40.43 10.42 8.77 6.67 6.82 6.98 15.15 11.11 16.67 14.29 15.38 15.38 16.39 8.33 5.88 8.64 8.89 12.28 13.98 10.42 10.53 15.00 18.60 18.37 11.48 16.67 11.48 16.13 16.67 11.32 10.64 6.45 14.29 12.50 14.63 12.00 8.93 K intron_retention CG2811,I_chr2R_20828961_20829772 chr2R - chr2R_20827378_20827428 chr2R_20827377_20827378;chr2R_20827428_20827429 chr2R_20827302_20827377;chr2R_20827429_20827526 88.89 85.71 84.78 95.83 85.19 97.22 92.86 94.12 89.86 93.33 87.50 85.92 90.00 87.88 90.20 84.62 92.00 88.89 94.59 89.11 97.50 75.00 94.87 80.36 96.30 93.02 81.25 68.42 95.83 92.86 86.54 92.31 83.33 83.93 96.30 96.30 86.21 77.42 89.74 81.25 86.36 88.89 90.00 66.67 78.12 87.76 83.93 94.74 93.65 88.89 84.78 85.71 96.30 86.54 80.00 87.27 82.46 93.55 K cassette MRP,F_chr2L_12727117_12736035 chr2L + chr2L_12727117_12737958 chr2L_12727117_12730842;chr2L_12731067_12737958 chr2L_12730843_12731066 chr2L_12727017_12727116;chr2L_12737959_12738176 17.39 18.18 28.57 26.67 25.00 30.00 17.54 32.00 25.86 10.81 28.00 61.84 30.77 26.32 19.35 26.32 14.81 15.38 23.33 59.26 38.71 2.05 14.38 13.73 15.71 25.00 13.97 7.28 6.96 11.11 7.55 13.16 6.45 24.00 17.54 18.45 19.80 12.79 13.33 15.04 13.16 25.00 16.00 10.24 10.64 17.39 18.75 13.43 35.42 6.19 15.23 11.90 24.39 10.91 25.93 9.86 13.64 28.21 K intron_retention CG11284,I_chrX_8581798_8581850,Ogg1 chrX + chrX_8581988_8582069 chrX_8581987_8581988;chrX_8582069_8582070 chrX_8581919_8581987;chrX_8582070_8582138 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 1.06 1.02 1.03 0.00 0.00 0.88 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL31,CG1827 chr2R + chr2R_5474844_5474951 chr2R_5474843_5474844;chr2R_5474951_5474952 chr2R_5474775_5474843;chr2R_5474952_5475211 19.05 NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 47.06 NA 13.33 NA 16.67 NA NA NA NA NA 11.76 NA NA NA NA NA NA NA NA NA 14.29 NA 21.43 NA NA NA NA NA NA NA 33.33 NA K alternative_acceptor CG42490,RI_chr2L_18666413_18666474,CREI_chr2L_18666629_18666680 chr2L + chr2L_18666629_18666691 chr2L_18666629_18666680 chr2L_18666560_18666628;chr2L_18666692_18666739 25.00 25.00 29.63 NA 36.36 13.04 22.22 19.51 26.53 27.27 17.65 20.83 26.09 29.63 19.23 28.57 10.00 30.43 31.25 27.66 29.41 NA 21.88 20.00 23.08 26.67 16.67 NA NA 29.41 27.27 17.65 25.00 22.86 35.71 NA 25.00 23.53 20.45 26.92 26.32 19.67 15.38 13.33 20.00 26.67 29.03 20.00 30.00 16.67 20.69 22.22 28.57 26.67 34.62 21.05 13.95 30.00 K jcn_only_AA Cdep,I_chr3R_749200_749265 chr3R + chr3R_749200_749265 chr3R_749200_749253 chr3R_749100_749199;chr3R_749266_749365 100.00 100.00 100.00 97.89 100.00 98.04 100.00 99.15 100.00 100.00 97.92 99.12 100.00 100.00 100.00 99.28 100.00 97.67 95.77 100.00 97.96 98.46 100.00 98.53 98.00 100.00 98.78 100.00 100.00 100.00 97.53 100.00 98.91 100.00 100.00 98.39 100.00 100.00 100.00 99.10 100.00 99.22 100.00 100.00 100.00 100.00 100.00 98.04 100.00 100.00 97.85 100.00 100.00 100.00 98.67 100.00 100.00 100.00 K jcn_only_AD CG10080 chr2R + chr2R_17517559_17517991 chr2R_17517589_17517991 chr2R_17517992_17518052;chr2R_17517196_17517558 2.78 2.86 0.00 0.00 NA 4.35 7.14 3.51 3.64 0.00 0.00 4.35 3.57 6.67 0.00 2.63 2.78 0.00 7.41 0.00 6.06 16.22 3.03 3.57 NA 0.00 5.71 0.00 2.94 0.00 0.00 7.69 4.17 5.08 NA NA 1.69 0.00 0.00 0.00 NA 2.78 0.00 4.35 NA 0.00 10.00 10.00 4.08 4.08 0.00 4.00 0.00 NA 0.00 0.00 2.38 0.00 K alternative_acceptor TMS1 chr3L + chr3L_16408057_16408120 chr3L_16408057_16408101 chr3L_16407921_16408056;chr3L_16408121_16408488 0.00 0.00 0.00 0.21 0.00 0.00 0.23 0.00 0.20 0.00 0.00 0.00 0.00 0.47 0.36 0.00 0.00 0.40 0.72 0.33 0.43 0.00 0.00 0.00 0.48 0.00 0.28 1.89 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.34 0.00 0.34 0.00 0.63 K intron_retention pum,I_chr3R_4898752_4906279,I_chr3R_4989351_5039481 chr3R - chr3R_4967054_4982839 chr3R_4967053_4967054;chr3R_4982839_4982840 chr3R_4967048_4967053;chr3R_4982840_4983072 66.67 46.67 86.36 56.76 76.47 93.33 56.67 53.57 73.02 NA 57.89 79.49 68.42 85.00 78.95 78.26 94.44 76.47 68.42 75.00 66.67 25.00 66.67 55.56 NA 74.07 42.86 50.00 NA 54.55 68.00 NA 60.00 74.29 52.94 33.33 38.46 NA 23.08 50.00 NA 77.50 81.82 28.57 NA NA NA 66.67 68.42 NA 46.67 46.15 NA NA 67.86 NA NA NA K jcn_only_AA Fcp1 chr2R - chr2R_20458389_20458456 chr2R_20458395_20458456 chr2R_20458457_20458550;chr2R_20457958_20458388 98.32 90.00 100.00 97.30 97.22 95.00 100.00 100.00 95.45 100.00 100.00 97.62 100.00 100.00 100.00 95.45 100.00 96.00 96.55 98.33 95.83 97.96 100.00 100.00 100.00 96.67 97.14 NA 100.00 100.00 100.00 100.00 98.31 95.45 96.67 97.37 98.78 100.00 97.96 98.44 96.00 98.44 100.00 100.00 97.30 100.00 97.14 100.00 100.00 96.30 97.62 100.00 96.55 94.29 100.00 97.44 96.67 97.22 K intron_retention CG11560 chr3L + chr3L_12113689_12113754 chr3L_12113688_12113689;chr3L_12113754_12113755 chr3L_12113202_12113688;chr3L_12113755_12114372 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 5.00 0.00 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA 5.56 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 K jcn_only_AD AP-1gamma,I_chrX_9003790_9007675 chrX + chrX_9003728_9004854;chrX_9004021_9004854;chrX_9003918_9004854 chrX_9003790_9004854 chrX_9004855_9004862;chrX_9003721_9003727 35.71 NA NA 42.86 NA NA 46.67 23.81 35.90 NA NA 32.69 NA 35.71 45.00 30.23 NA NA 50.00 29.63 NA NA 14.29 NA NA 50.00 NA NA NA NA 32.35 NA NA 44.12 NA NA NA NA NA NA NA 43.75 NA NA NA NA NA NA 31.25 NA NA NA NA NA 26.47 NA NA NA K jcn_only_AD opa1-like,I_chr2R_10119470_10120234,I_chr2R_10121848_10121900,I_chr2R_10122128_10122197,I_chr2R_10122334_10122393 chr2R - chr2R_10119470_10120234;chr2R_10119470_10120229 chr2R_10119470_10120220 chr2R_10119370_10119469;chr2R_10120235_10120334 34.69 39.57 34.26 44.00 37.88 43.88 43.00 40.44 34.69 20.83 50.00 33.33 24.76 27.50 33.09 40.00 31.68 32.59 36.22 35.47 39.29 38.71 32.80 32.04 34.59 40.32 48.21 38.00 41.01 26.73 31.95 35.80 35.58 32.79 31.87 45.83 39.59 43.48 38.97 70.68 39.69 34.26 23.15 32.37 26.74 30.25 33.53 30.99 29.68 32.98 29.89 39.66 34.57 44.55 32.21 42.11 38.56 22.35 K intron_retention CG31619 chr2L + chr2L_21704604_21710563 chr2L_21704603_21704604;chr2L_21710563_21710564 chr2L_21704459_21704603;chr2L_21710564_21710693 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 12.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Hydr2,RI_chr2L_3164075_3164159 chr2L + chr2L_3167140_3167203 chr2L_3167146_3167203 chr2L_3167204_3167558;chr2L_3166970_3167139 0.20 0.32 0.29 0.00 0.36 0.32 0.20 0.23 0.17 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.39 0.00 0.34 0.00 0.37 0.27 0.40 0.00 0.43 0.00 0.00 0.34 0.21 0.00 0.53 0.21 0.00 0.21 0.26 0.00 0.39 0.53 0.30 0.00 0.00 0.39 0.00 0.22 0.50 0.33 0.55 0.00 0.52 0.00 0.00 0.00 0.00 K jcn_only_AD CG5745,I_chr3R_16928299_16928444 chr3R + chr3R_16928299_16928444 chr3R_16928384_16928444 chr3R_16928445_16928544;chr3R_16928199_16928298 100.00 98.68 100.00 100.00 100.00 96.67 100.00 96.77 100.00 100.00 100.00 98.73 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.13 100.00 100.00 100.00 100.00 97.83 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 99.09 100.00 100.00 99.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 97.56 98.39 100.00 100.00 100.00 100.00 100.00 K intron_retention CG2225 chr2L - chr2L_21666005_21666062 chr2L_21666004_21666005;chr2L_21666062_21666063 chr2L_21665918_21666004;chr2L_21666063_21666377 29.70 36.36 25.00 55.00 25.00 NA 39.13 37.93 36.36 NA NA 25.00 46.15 23.81 NA 39.39 37.50 30.00 22.73 32.50 NA NA 28.00 6.25 53.85 28.57 39.13 NA NA 29.41 29.17 NA 20.00 28.57 40.00 58.33 NA 14.29 36.36 23.08 NA 26.47 44.44 41.67 NA 28.57 23.53 42.11 30.77 14.29 15.00 27.27 NA NA 40.00 17.65 NA 38.46 K intron_retention Not1,I_chr2R_5463624_5463682 chr2R - chr2R_5462513_5462574 chr2R_5462512_5462513;chr2R_5462574_5462575 chr2R_5461292_5462512;chr2R_5462575_5463037 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor E_chr2RHet_2881760_2912543,eIF-4B,I_chr2RHet_2903246_2912532,I_chr2RHet_2912605_2917250 chr2RHet + chr2RHet_2901839_2902093 chr2RHet_2902034_2902093 chr2RHet_2902094_2902500;chr2RHet_2901816_2901838 0.00 0.00 0.00 1.37 0.00 0.00 0.65 1.24 0.79 0.00 0.00 0.88 0.00 1.08 0.00 0.92 0.00 0.00 1.04 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 6.67 0.00 2.70 0.00 0.00 0.65 4.76 0.00 2.70 NA 0.00 4.88 4.76 1.31 1.37 5.88 0.00 2.38 5.26 3.45 1.27 2.86 5.56 0.00 0.00 0.00 0.00 0.00 1.56 0.00 K jcn_only_AD CG18317,RI_chr2L_1718492_1723881 chr2L - chr2L_1718492_1718674;chr2L_1718492_1718695 chr2L_1718492_1718739 chr2L_1718421_1718491;chr2L_1718740_1718903 3.77 3.70 8.20 3.28 0.00 4.35 4.88 4.40 3.94 2.70 3.03 2.33 0.00 0.00 3.77 0.00 0.00 0.00 0.00 1.79 2.27 9.57 2.94 7.69 6.98 4.88 4.30 3.70 9.23 14.29 9.23 1.19 5.00 3.09 8.86 9.86 2.02 6.67 3.20 6.05 3.61 7.69 2.38 3.74 4.95 6.80 1.16 5.16 1.83 4.11 3.57 6.06 2.74 4.76 1.49 6.25 4.92 4.05 K intron_retention CG13585,RI_chr2R_20420065_20420105,E_chr2R_20420167_20420418 chr2R + chr2R_20420167_20420419 chr2R_20420166_20420167;chr2R_20420419_20420420 chr2R_20420121_20420166;chr2R_20420420_20420518 0.00 0.00 1.61 0.00 0.00 0.00 0.00 3.75 1.75 4.00 5.13 0.00 0.00 2.56 0.00 5.26 0.00 0.00 0.00 0.88 0.00 0.00 1.04 0.00 0.00 0.00 3.61 5.26 0.00 0.00 3.85 0.00 0.00 1.54 0.00 0.00 0.00 0.00 1.44 2.86 0.00 0.88 0.00 0.00 0.00 2.44 0.00 0.00 2.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 1.21 0.00 K intron_retention ena chr2R + chr2R_15047541_15047684 chr2R_15047540_15047541;chr2R_15047684_15047685 chr2R_15047496_15047540;chr2R_15047685_15048407 2.08 2.50 0.00 2.03 0.00 4.49 0.00 3.92 2.54 0.00 0.00 1.71 0.00 4.71 0.00 2.63 1.09 1.09 2.86 1.69 0.00 1.68 1.62 2.68 2.30 2.41 5.22 2.27 2.56 2.16 0.00 4.69 0.82 2.48 2.44 0.00 1.04 2.08 1.28 3.76 4.69 2.22 2.44 2.91 3.17 2.53 0.00 3.51 1.81 0.00 0.00 3.51 1.72 0.00 1.48 2.25 0.00 3.57 K intron_retention CG2371 chrX - chrX_11571558_11571618 chrX_11571557_11571558;chrX_11571618_11571619 chrX_11571377_11571557;chrX_11571619_11572303 100.00 NA NA 93.75 NA NA 100.00 93.33 100.00 NA NA 100.00 NA NA NA 92.86 NA NA 100.00 92.31 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 82.35 NA NA NA NA NA NA NA 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA 88.89 NA NA 100.00 K intron_retention SWAP,RI_chrX_936466_936762,I_chrX_936466_936835,RI_chrX_936919_937245,RI_chrX_938935_938985,I_chrX_941459_982652 chrX + chrX_936466_937245 chrX_936465_936466;chrX_937245_937246 chrX_936366_936465;chrX_937246_937345 40.00 34.62 36.36 50.00 33.33 33.33 73.33 50.00 47.62 40.00 36.36 30.56 NA 61.54 55.56 61.11 46.67 42.11 61.54 46.88 45.45 47.06 48.00 33.33 47.06 NA 36.84 54.55 33.33 37.50 58.62 33.33 27.45 36.67 40.00 NA 45.16 36.36 40.00 37.50 36.84 46.67 NA 55.00 35.29 34.62 38.46 33.33 42.11 26.09 33.33 69.23 50.00 33.33 55.00 33.33 50.00 27.78 K intron_retention dpr3 chr2L - chr2L_2061908_2061974 chr2L_2061907_2061908;chr2L_2061974_2061975 chr2L_2061810_2061907;chr2L_2061975_2062299 4.17 3.92 0.00 14.55 2.70 0.00 18.92 4.35 5.75 NA 4.35 5.38 0.00 2.13 0.00 0.00 0.00 NA 0.00 4.44 9.09 24.76 6.94 0.00 11.36 12.71 11.11 33.33 23.53 1.96 5.88 6.25 3.92 4.62 2.56 6.58 3.12 0.00 4.48 4.35 7.95 5.66 4.17 1.69 1.64 2.63 2.15 9.30 4.55 0.00 8.82 0.00 0.00 2.50 4.35 0.00 0.00 0.00 N alternative_donor CG15211,EF_chrX_10666660_10666923 chrX + chrX_10666660_10671993 chrX_10667200_10671993 chrX_10671994_10672161;chrX_10666577_10666659 100.00 100.00 100.00 70.00 50.00 61.11 100.00 100.00 78.26 18.75 100.00 100.00 100.00 100.00 100.00 66.67 100.00 60.00 69.23 70.18 100.00 100.00 66.67 61.90 45.45 100.00 43.33 43.59 30.00 100.00 72.73 100.00 100.00 100.00 100.00 100.00 50.00 52.63 50.00 100.00 100.00 83.33 100.00 58.70 64.29 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 57.14 41.67 100.00 K intron_retention CG12723,CG2453 chrX - chrX_13087668_13087720 chrX_13087667_13087668;chrX_13087720_13087721 chrX_13087079_13087667;chrX_13087721_13088139 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG4658,I_chr2L_9958819_9958939 chr2L + chr2L_9957330_9957428 chr2L_9957330_9957402 chr2L_9957318_9957329;chr2L_9957429_9957807 19.34 NA NA NA NA NA NA 17.86 34.62 NA NA NA NA NA 10.00 13.64 NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 26.92 NA NA NA NA NA 8.70 NA 17.86 NA NA NA NA NA NA 20.83 NA NA NA NA NA 31.82 NA NA NA K intron_retention CG32809,I_chrX_1577031_1577129,CEI_chrX_1579569_1579679,RI_chrX_1585391_1586471,I_chrX_1589508_1589564 chrX - chrX_1577294_1578485 chrX_1577293_1577294;chrX_1578485_1578486 chrX_1577176_1577293;chrX_1578486_1578590 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 20.00 8.33 4.76 0.00 0.00 5.88 NA 5.00 0.00 0.00 NA 0.00 4.35 0.00 11.76 5.41 0.00 5.71 3.57 NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 NA 5.41 0.00 NA NA 0.00 0.00 NA 0.00 K intron_retention CG18659,E_chr2R_5011363_5019110,RI_chr2R_5013572_5014531,I_chr2R_5016147_5016997 chr2R - chr2R_5013572_5013685 chr2R_5013571_5013572;chr2R_5013685_5013686 chr2R_5013472_5013571;chr2R_5013686_5013702 0.00 0.00 0.00 17.65 0.00 0.00 17.14 11.76 3.03 NA 0.00 2.27 0.00 0.00 0.00 0.00 0.00 4.35 0.00 3.92 0.00 24.14 9.30 0.00 3.12 0.00 6.67 12.00 0.00 6.67 0.00 0.00 8.33 0.00 0.00 12.50 0.00 0.00 2.38 0.00 12.50 6.00 5.88 0.00 0.00 0.00 0.00 5.56 4.88 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 10.53 K intron_retention lig,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3963608_3963797 chr2R_3963607_3963608;chr2R_3963797_3963798 chr2R_3963365_3963607;chr2R_3963798_3963953 7.69 11.54 8.22 10.56 0.00 9.38 8.45 7.69 14.17 5.00 8.00 8.55 10.20 8.47 9.86 13.43 8.77 8.77 9.33 11.11 10.00 13.89 8.91 7.37 0.00 6.98 15.05 19.51 8.20 6.67 7.69 0.00 4.40 6.52 4.62 5.80 3.74 0.00 7.20 5.63 0.00 11.72 12.50 6.41 0.00 4.76 0.00 6.25 7.58 9.43 9.28 2.27 6.90 7.69 8.82 7.37 7.25 2.61 K alternative_donor I_chr2R_8821104_8821171,CG13322,I_chr2R_8823775_8823829 chr2R - chr2R_8823766_8823817;chr2R_8823766_8823815 chr2R_8823766_8823829 chr2R_8823675_8823765;chr2R_8823830_8823929 11.11 5.56 NA 4.35 18.18 NA 14.29 10.34 11.36 NA 18.75 10.00 14.29 7.14 8.33 22.22 NA 25.00 11.11 14.29 6.67 17.65 3.12 17.39 NA 4.55 4.76 26.67 6.67 11.11 5.26 11.11 4.00 12.50 16.67 5.00 13.04 NA 3.12 18.18 NA 3.33 30.77 5.56 7.69 9.09 16.67 6.25 15.38 NA 6.25 6.25 7.69 5.88 11.76 14.29 11.11 11.11 K cassette Rlip,RI_chr3R_16843597_16843851,I_chr3R_16845111_16845166 chr3R + chr3R_16843597_16843851 chr3R_16843597_16843663;chr3R_16843797_16843851 chr3R_16843664_16843796 chr3R_16843497_16843596;chr3R_16843852_16843951 100.00 100.00 100.00 92.86 87.50 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 91.67 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 93.33 100.00 100.00 93.75 100.00 92.31 100.00 90.91 100.00 100.00 94.12 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 95.24 K intron_retention CG18812,I_chr2R_3607502_3609369,RI_chr2R_3613277_3613372,I_chr2R_3617214_3622585 chr2R - chr2R_3607502_3609538 chr2R_3607501_3607502;chr2R_3609538_3609539 chr2R_3607402_3607501;chr2R_3609539_3610178 3.74 0.00 0.00 5.56 10.71 0.00 6.25 0.00 6.12 2.38 NA 15.15 0.00 0.00 7.14 3.45 0.00 0.00 0.00 0.00 0.00 40.32 3.77 0.00 4.76 0.00 0.00 7.27 5.00 6.45 8.89 4.76 6.56 4.00 7.41 8.33 6.90 4.65 2.33 6.12 0.00 3.70 6.67 3.70 0.00 0.00 3.92 7.14 0.00 3.28 5.26 7.69 3.33 8.33 7.14 0.00 0.00 0.00 K alternative_acceptor Pfrx,I_chrX_19390217_19400515,RI_chrX_19390217_19403850,RI_chrX_19392914_19400518,RI_chrX_19399882_19400518,I_chrX_19400112_19400515,RI_chrX_19400112_19400518,I_chrX_19400271_19400518 chrX + chrX_19390821_19400518 chrX_19390821_19400515 chrX_19390789_19390820;chrX_19400519_19400615 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Prestin chr3L - chr3L_17892973_17893042 chr3L_17892972_17892973;chr3L_17893042_17893043 chr3L_17891994_17892972;chr3L_17893043_17893191 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Pi3K92E,I_chr3R_16459436_16459551,I_chr3R_16459436_16459848 chr3R - chr3R_16459436_16459848;chr3R_16459436_16460267;chr3R_16459436_16460340;chr3R_16459436_16459551 chr3R_16459436_16460287 chr3R_16459336_16459435;chr3R_16460341_16460435 0.00 5.56 10.53 5.26 14.29 0.00 0.00 6.25 0.00 0.00 8.33 0.00 0.00 7.14 9.09 5.41 5.88 0.00 0.00 4.44 7.69 5.00 6.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 4.55 0.00 0.00 8.33 5.41 14.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.11 0.00 0.00 8.33 16.67 0.00 0.00 K intron_retention I_chrX_11611298_11612109,Tango10 chrX + chrX_11614566_11614616 chrX_11614565_11614566;chrX_11614616_11614617 chrX_11614268_11614565;chrX_11614617_11615060 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 91.67 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA 90.91 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 K intron_retention I_chr2L_8213024_8213227,CG8360 chr2L + chr2L_8213261_8213336 chr2L_8213260_8213261;chr2L_8213336_8213337 chr2L_8213228_8213260;chr2L_8213337_8213402 72.78 69.23 NA 61.54 NA NA 77.78 65.00 93.75 NA NA 73.68 NA 87.50 60.00 57.14 NA 80.00 NA 62.50 NA 78.12 72.00 76.67 NA NA 80.00 88.89 82.35 56.25 32.35 69.23 41.18 73.33 73.33 66.67 72.00 71.43 76.47 64.00 69.57 92.86 NA 76.47 66.67 82.61 84.62 50.00 81.25 80.00 70.37 64.29 82.35 80.00 NA 72.22 77.78 69.23 N jcn_only_AD Irc,I_chr3R_12830023_12830084,CG8907 chr3R + chr3R_12830775_12830891 chr3R_12830829_12830891 chr3R_12830892_12831073;chr3R_12830588_12830774 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Tpr2 chr2L + chr2L_16506853_16506928 chr2L_16506852_16506853;chr2L_16506928_16506929 chr2L_16506008_16506852;chr2L_16506929_16507609 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.35 0.00 0.00 0.60 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 1.90 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 K multi_cassette Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CE_chr2R_11826384_11826741,I_chr2R_11826763_11826990,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824089_11827414 chr2R_11824089_11825183;chr2R_11825385_11825619;chr2R_11825773_11825951;chr2R_11826484_11826541;chr2R_11826763_11827414 chr2R_11825184_11825384;chr2R_11825620_11825772;chr2R_11825952_11826483;chr2R_11826542_11826762 chr2R_11823989_11824088;chr2R_11827415_11827523 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention RI_chr2L_8218680_8218853,Pvr,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8223450_8223824 chr2L_8223449_8223450;chr2L_8223824_8223825 chr2L_8223397_8223449;chr2L_8223825_8223937 2.00 2.82 1.89 1.72 1.89 1.68 1.27 2.10 1.53 1.76 2.31 2.44 1.56 1.24 1.88 1.67 1.60 1.69 1.40 1.69 1.50 2.50 1.90 2.91 2.77 1.52 2.33 4.26 3.12 2.19 2.41 3.87 5.81 1.33 2.37 3.45 2.00 2.13 2.00 4.50 4.80 1.75 0.89 2.45 1.58 2.90 2.39 4.21 1.07 2.76 3.05 1.75 2.75 2.22 1.71 1.40 1.59 4.86 N alternative_donor Not1,I_chr2R_5463624_5463682 chr2R - chr2R_5455592_5455673;chr2R_5455592_5456067 chr2R_5455592_5456522 chr2R_5455002_5455591;chr2R_5456523_5457661 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_donor Inos,I_chr2R_3344353_3345211 chr2R - chr2R_3344353_3346113;chr2R_3344353_3346212;chr2R_3344353_3344799 chr2R_3344353_3345211 chr2R_3344253_3344352;chr2R_3346213_3346215 0.32 0.25 0.19 0.32 0.27 0.46 0.25 0.43 0.46 0.19 0.57 0.55 0.35 0.24 0.28 0.08 0.31 0.39 0.11 0.23 0.22 0.13 0.37 0.32 0.27 0.18 0.39 0.77 1.64 0.29 0.59 0.28 0.33 0.37 0.38 0.49 0.14 0.21 0.35 0.38 0.33 0.41 0.30 0.20 0.27 0.32 0.17 0.27 0.42 0.52 0.39 0.12 0.33 0.29 0.37 0.26 0.42 0.45 K intron_retention Atg18,I_chr3L_8182683_8182941 chr3L + chr3L_8180294_8180586 chr3L_8180293_8180294;chr3L_8180586_8180587 chr3L_8180118_8180293;chr3L_8180587_8180676 92.31 90.91 93.33 85.19 100.00 100.00 90.48 95.65 95.83 NA 88.89 95.00 91.67 91.67 100.00 100.00 92.31 92.31 90.00 95.65 87.50 96.43 94.74 100.00 93.75 100.00 94.44 NA 91.67 81.82 94.12 NA 76.92 100.00 80.00 100.00 95.45 90.91 100.00 78.95 NA 90.00 90.00 87.50 90.91 81.82 100.00 87.50 94.12 100.00 85.71 90.00 76.92 90.00 94.44 NA 92.31 NA K intron_retention pum,I_chr3R_4898752_4906279,I_chr3R_4989351_5039481 chr3R - chr3R_4905684_4906279 chr3R_4905683_4905684;chr3R_4906279_4906280 chr3R_4905467_4905683;chr3R_4906280_4906379 2.63 2.63 8.00 6.45 6.82 3.57 10.00 8.16 8.33 0.00 6.38 2.63 7.41 2.27 0.00 10.53 0.00 2.17 4.65 3.88 0.00 0.00 2.88 3.23 0.00 6.00 2.74 0.00 0.88 1.98 2.00 0.00 2.04 7.04 2.63 3.85 1.89 2.94 1.50 4.12 1.92 3.94 4.26 0.00 1.83 1.44 0.00 2.78 3.45 2.27 2.50 2.33 0.00 2.35 6.06 3.12 0.00 4.35 K intron_retention cenB1A chr3R + chr3R_18947355_18947528 chr3R_18947354_18947355;chr3R_18947528_18947529 chr3R_18947059_18947354;chr3R_18947529_18947666 4.35 3.23 8.00 4.69 3.45 5.00 4.88 4.00 3.95 0.00 2.22 4.81 4.44 0.00 4.48 3.12 5.45 2.56 12.00 4.65 2.44 9.00 4.08 1.32 1.92 4.35 3.51 5.26 11.90 6.38 3.77 17.39 15.56 0.00 5.13 3.12 2.94 6.35 2.20 12.16 5.71 7.03 9.09 5.48 11.43 7.84 0.00 25.00 5.38 2.60 3.23 0.00 2.86 0.00 4.11 2.17 0.00 19.35 K jcn_only_AA 14-3-3epsilon,I_chr3R_14068632_14073155,RI_chr3R_14074062_14074138,I_chr3R_14074016_14074138 chr3R + chr3R_14073874_14073936;chr3R_14073874_14073954;chr3R_14073874_14073942 chr3R_14073874_14073939 chr3R_14073693_14073873;chr3R_14073955_14074015 12.97 14.67 11.98 13.55 14.25 13.58 14.38 13.95 12.50 13.77 14.78 11.98 11.64 11.08 11.34 12.97 11.08 12.64 12.51 12.60 11.98 15.05 14.55 13.28 14.66 14.76 10.33 11.52 13.84 14.23 13.67 12.41 13.98 12.51 12.83 15.97 13.61 13.29 13.15 13.00 12.95 11.88 13.38 12.70 11.47 11.98 13.84 13.24 12.18 12.43 12.22 10.34 12.68 14.54 12.34 13.82 13.08 12.58 K alternative_acceptor CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_245062_246387 chr4_245066_246387 chr4_246388_246398;chr4_244571_245061 93.20 92.86 92.31 95.83 100.00 90.91 94.12 93.55 97.14 NA NA 95.24 100.00 100.00 92.31 95.00 90.91 87.50 100.00 93.75 NA 88.89 92.86 90.91 NA NA 90.91 NA 100.00 100.00 92.59 NA 87.50 95.45 100.00 100.00 100.00 88.89 77.78 88.24 NA 92.59 NA 94.44 NA 90.00 88.89 87.50 96.67 90.00 100.00 88.89 100.00 NA 94.74 NA 90.00 NA K alternative_donor CG7369 chr3L + chr3L_22735120_22738488;chr3L_22735045_22738488 chr3L_22735652_22738488 chr3L_22738489_22739986;chr3L_22734976_22735044 91.29 NA 100.00 92.31 87.50 81.82 84.62 78.57 90.48 NA 88.89 93.33 87.50 88.89 90.00 78.57 87.50 90.00 84.62 95.00 85.71 100.00 94.44 92.31 90.00 90.91 93.75 100.00 90.91 92.86 84.62 NA 93.75 93.33 83.33 91.67 100.00 100.00 93.33 95.65 100.00 90.48 87.50 100.00 88.89 90.91 80.00 94.12 77.78 100.00 93.75 100.00 100.00 87.50 91.67 100.00 85.71 100.00 K cassette smid,I_chr3L_7375166_7375310,I_chr3L_7375435_7375508 chr3L + chr3L_7375832_7375993 chr3L_7375832_7375884;chr3L_7375936_7375993 chr3L_7375885_7375935 chr3L_7375509_7375831;chr3L_7375994_7376334 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 97.14 98.63 100.00 100.00 100.00 98.33 100.00 100.00 100.00 98.84 100.00 100.00 97.73 100.00 100.00 93.02 98.00 96.67 67.50 100.00 100.00 100.00 98.95 98.46 100.00 100.00 100.00 100.00 97.83 98.28 100.00 98.81 100.00 100.00 96.43 100.00 100.00 100.00 100.00 96.77 100.00 100.00 92.59 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA JhI-26,I_chr2R_12177114_12177266 chr2R + chr2R_12177114_12177456 chr2R_12177114_12177266 chr2R_12177014_12177113;chr2R_12177457_12178256 1.25 5.00 2.27 0.00 0.00 0.00 1.78 1.87 0.95 6.67 0.00 1.33 2.08 0.00 0.00 1.33 0.00 7.14 2.08 2.67 2.22 2.53 0.00 0.00 1.61 0.00 1.19 0.00 2.67 3.77 0.00 3.23 0.00 3.80 2.56 2.27 3.08 0.00 0.00 2.83 0.00 0.00 0.00 1.11 3.39 0.00 0.00 1.30 1.35 4.17 0.00 0.00 NA 0.00 3.92 2.78 0.00 0.00 K jcn_only_AA Caki,I_chr3R_17645303_17645375 chr3R - chr3R_17644846_17645375 chr3R_17645303_17645375 chr3R_17645376_17645475;chr3R_17644740_17644845 3.45 2.91 1.67 0.50 3.70 2.44 2.91 3.31 4.62 9.30 0.95 2.66 1.25 3.64 1.59 6.72 2.04 0.83 1.80 2.95 4.08 8.64 5.10 2.63 2.27 1.00 4.84 6.25 6.25 4.00 3.59 2.63 1.89 5.68 4.55 0.00 4.71 2.06 4.51 11.20 0.00 3.32 3.95 6.72 5.00 5.26 6.10 11.11 3.59 1.61 4.24 1.82 8.77 1.67 3.23 2.99 3.45 4.44 N intron_retention CG13384 chr2L + chr2L_8385927_8386216 chr2L_8385926_8385927;chr2L_8386216_8386217 chr2L_8385915_8385926;chr2L_8386217_8386384 89.25 84.00 72.97 100.00 73.26 71.05 84.73 83.05 78.10 100.00 76.19 74.29 83.33 75.00 72.53 76.70 77.78 81.67 77.38 65.81 84.27 89.25 100.00 100.00 100.00 77.61 100.00 100.00 100.00 100.00 73.17 100.00 100.00 75.73 100.00 100.00 87.86 100.00 90.43 90.22 100.00 74.57 71.43 100.00 100.00 100.00 100.00 100.00 73.73 100.00 100.00 84.85 78.95 100.00 72.53 100.00 100.00 100.00 K cassette sxc,I_chr2R_1208121_1213310,I_chr2R_1213177_1213308 chr2R + chr2R_1203985_1207752 chr2R_1203985_1207512;chr2R_1207697_1207752 chr2R_1207513_1207696 chr2R_1203885_1203984;chr2R_1207753_1207821 100.00 100.00 98.39 97.32 100.00 97.78 100.00 96.50 99.35 100.00 97.22 97.60 100.00 98.48 100.00 99.25 100.00 100.00 95.00 100.00 100.00 100.00 98.36 97.50 97.22 98.31 100.00 95.00 100.00 100.00 95.45 100.00 98.57 98.52 100.00 97.78 100.00 96.88 100.00 100.00 96.55 98.52 100.00 98.44 100.00 100.00 100.00 100.00 99.25 100.00 98.36 100.00 96.55 100.00 98.85 100.00 97.06 100.00 K alternative_acceptor CG4630,RI_chr2R_9103472_9103634,I_chr2R_9103765_9103852,I_chr2R_9103910_9104108,I_chr2R_9103956_9104108,RI_chr2R_9104206_9104265 chr2R - chr2R_9103910_9104108 chr2R_9103956_9104108 chr2R_9104109_9104202;chr2R_9103856_9103909 90.91 85.71 NA 91.67 NA NA 83.33 83.33 87.50 85.71 NA 87.50 NA NA NA NA NA NA NA 87.50 NA 91.67 91.67 87.50 NA NA 78.57 NA 100.00 100.00 92.31 90.00 100.00 NA NA 87.50 91.67 100.00 90.91 92.86 92.31 NA NA 86.96 88.89 91.67 100.00 90.91 100.00 NA 85.71 NA NA 100.00 85.71 77.78 NA NA K intron_retention Galpha49B,I_chr2R_8501587_8501648,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500390_8503411 chr2R_8500389_8500390;chr2R_8503411_8503412 chr2R_8500380_8500389;chr2R_8503412_8503586 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA 4.35 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K cassette lqf,I_chr3L_7522287_7522807 chr3L + chr3L_7522287_7526454 chr3L_7522287_7525771;chr3L_7525929_7526454 chr3L_7525772_7525928 chr3L_7522187_7522286;chr3L_7526455_7526543 0.00 0.00 0.00 0.67 0.00 1.35 0.00 0.65 0.49 0.00 0.00 0.53 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.38 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 1.87 0.00 0.89 0.00 0.95 0.71 0.00 0.00 0.00 0.00 0.00 0.57 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 K alternative_acceptor miple2,I_chr3L_274251_274594 chr3L + chr3L_274031_274103 chr3L_274031_274081 chr3L_273550_274030;chr3L_274104_274241 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG15609,I_chr2R_12898038_12898391,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12898041_12898658 chr2R_12898040_12898041;chr2R_12898658_12898659 chr2R_12897841_12898040;chr2R_12898659_12899053 39.02 NA NA NA NA NA 24.14 63.64 20.00 NA NA 63.64 NA NA 54.55 NA NA NA NA 50.00 NA NA 23.08 18.75 NA NA 54.55 NA NA NA NA NA NA 25.00 NA NA NA 41.67 NA 54.55 NA 46.15 NA 26.67 NA 36.36 NA NA 31.82 NA NA NA NA NA NA NA NA NA K intron_retention Rga,Spec2 chr3R - chr3R_1436152_1436209 chr3R_1436151_1436152;chr3R_1436209_1436210 chr3R_1435937_1436151;chr3R_1436210_1436345 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 2.27 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 2.73 1.03 0.00 0.87 0.00 0.84 2.00 0.91 0.00 0.00 0.00 0.45 0.00 0.00 1.36 0.00 0.00 1.11 0.00 1.06 0.00 6.12 0.00 0.00 0.00 0.00 0.62 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 K alternative_donor nes chr3L - chr3L_19253331_19253632;chr3L_19253331_19253636;chr3L_19253331_19253609;chr3L_19253331_19253648;chr3L_19253331_19253745;chr3L_19253331_19253764 chr3L_19253331_19253676 chr3L_19253215_19253330;chr3L_19253765_19253779 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Nipped-B,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_616057_616311 chr2R_616056_616057;chr2R_616311_616312 chr2R_615957_616056;chr2R_616312_616401 19.23 26.67 19.23 23.08 NA 25.00 20.34 24.32 19.61 NA 25.00 14.58 21.74 33.33 11.11 34.88 26.67 NA 22.73 26.92 14.29 15.38 15.38 9.52 5.26 12.50 10.34 23.08 12.50 NA 16.00 NA NA 20.93 10.53 21.43 15.00 NA NA 10.00 NA 15.38 12.50 15.00 NA NA NA 31.58 28.26 NA 13.04 14.29 NA NA 31.25 NA NA NA K intron_retention CG42238,I_chr2L_20967747_20967858,I_chr2L_20967747_20968017,I_chr2L_20967747_20968635,I_chr2L_20967747_20968842,I_chr2L_20967747_20969164,I_chr2L_20967747_20993232,I_chr2L_20967747_21051685,RI_chr2L_20967747_21051705,noncoding_4091,I_chr2L_20969524_21051773,I_chr2L_20993378_21028634,I_chr2L_21011481_21028636,RI_chr2L_21028682_21051773 chr2L - chr2L_20967747_21051773 chr2L_20967746_20967747;chr2L_21051773_21051774 chr2L_20967726_20967746;chr2L_21051774_21051785 15.00 16.22 11.76 14.93 14.71 13.79 18.64 17.91 23.40 9.76 19.05 13.70 24.24 10.00 14.04 19.30 12.82 16.13 15.79 16.67 20.00 12.73 21.57 8.93 16.22 13.95 25.49 14.29 23.08 8.47 17.39 8.33 15.52 11.54 17.14 16.36 10.00 8.82 11.36 15.29 8.57 14.77 20.00 24.32 10.26 14.71 13.89 14.06 18.48 13.51 16.33 17.24 17.86 20.83 15.00 13.16 16.22 10.00 K jcn_only_AA CG7861 chr2R + chr2R_1931884_1931956 chr2R_1931884_1931938 chr2R_1931601_1931883;chr2R_1931957_1932469 100.00 100.00 100.00 98.96 100.00 100.00 98.82 100.00 100.00 100.00 100.00 99.07 98.21 100.00 100.00 100.00 100.00 100.00 100.00 99.32 100.00 100.00 100.00 100.00 100.00 100.00 98.75 100.00 98.85 100.00 100.00 100.00 100.00 98.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.57 100.00 100.00 98.20 98.39 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention ps,I_chr3R_5243723_5270765,I_chr3R_5245770_5269732,I_chr3R_5265428_5269732,I_chr3R_5265428_5270765,I_chr3R_5269733_5270765 chr3R + chr3R_5269799_5270765 chr3R_5269798_5269799;chr3R_5270765_5270766 chr3R_5269733_5269798;chr3R_5270766_5270860 3.08 2.99 1.67 3.70 3.77 4.08 6.67 1.45 1.44 2.50 1.92 4.95 7.14 6.12 1.45 2.53 0.00 8.33 3.08 3.67 0.00 1.95 3.25 5.36 4.65 6.98 1.67 7.69 4.35 1.19 4.44 0.00 3.08 5.43 3.70 5.41 2.56 0.00 0.00 5.19 0.00 7.14 2.44 2.94 4.17 5.26 2.63 3.51 4.63 0.00 4.60 2.38 0.00 0.00 4.17 0.00 0.00 6.90 K alternative_acceptor CG8436,CG8444,Vps16A chr3R + chr3R_5085679_5085747 chr3R_5085679_5085732 chr3R_5085616_5085678;chr3R_5085748_5085801 63.64 NA NA 69.23 NA NA 63.64 69.23 47.06 NA NA 62.50 NA NA NA 66.67 NA NA 63.64 55.56 NA NA 75.00 60.00 NA NA NA NA NA NA NA NA NA 84.62 NA NA NA NA NA 75.00 NA 75.00 NA NA NA 50.00 NA NA 66.67 87.50 45.45 NA 46.67 NA 100.00 NA 61.54 50.00 K cassette CG40263,F_chr2RHet_1265687_1293040,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1324541_1335781;chr2RHet_1324541_1335106 chr2RHet_1324541_1333289;chr2RHet_1333469_1335106,chr2RHet_1333469_1335781 chr2RHet_1333290_1333468 chr2RHet_1324446_1324540;chr2RHet_1335782_1335833 23.77 16.67 28.00 16.67 16.67 22.22 10.00 4.88 12.50 NA 93.33 26.19 NA 11.90 14.29 13.95 7.69 30.43 9.38 21.21 47.06 40.00 24.00 31.25 16.67 10.53 23.53 60.00 61.54 29.41 16.67 62.50 60.00 10.94 25.00 27.27 25.00 28.57 57.14 32.26 NA 17.86 23.08 16.67 54.55 47.06 12.50 58.33 18.52 25.00 12.50 10.71 30.00 26.67 15.15 10.53 30.77 69.23 N jcn_only_AD CG10353,I_chrX_11775936_11778830,I_chrX_11778617_11778830,RI_chrX_11780885_11780988 chrX - chrX_11775936_11777234;chrX_11775936_11776058;chrX_11775936_11777220;chrX_11775936_11777133 chrX_11775936_11776142 chrX_11775836_11775935;chrX_11777235_11777654 27.73 31.58 25.37 18.52 15.22 29.63 7.59 16.00 22.66 8.00 18.18 27.73 17.78 24.19 22.09 12.36 17.39 7.84 8.11 30.63 29.09 40.00 31.33 33.33 29.63 16.36 13.46 13.64 49.30 34.92 26.61 43.18 35.71 17.86 46.67 29.55 16.35 26.79 30.00 28.93 28.89 33.90 16.98 22.39 43.75 34.67 36.36 39.10 30.77 22.22 23.00 25.00 37.25 32.50 43.55 35.71 23.08 42.86 K cassette Zn72D,RF_chr3L_16100887_16102721,I_chr3L_16105199_16105253 chr3L - chr3L_16100887_16102721 chr3L_16100887_16101951;chr3L_16102155_16102721 chr3L_16101952_16102154 chr3L_16100787_16100886;chr3L_16102722_16102821 35.45 32.98 35.82 32.95 26.56 33.87 36.47 31.46 34.33 44.23 28.30 31.78 26.56 34.00 30.16 30.16 32.73 32.61 28.85 38.10 31.37 51.81 40.43 34.78 37.35 25.33 45.74 44.00 46.67 39.18 57.89 39.71 35.45 32.29 44.59 45.07 37.10 31.00 35.29 41.04 40.48 37.23 30.00 44.94 42.00 44.21 37.00 40.62 34.51 37.89 38.10 29.23 28.57 38.16 32.05 43.56 27.03 29.73 K cassette musashi,C_chr3R_21387506_21389801 chr3R + chr3R_21421325_21425228 chr3R_21421325_21422820;chr3R_21422937_21425228 chr3R_21422821_21422936 chr3R_21421040_21421324;chr3R_21425229_21425932 0.00 0.00 0.00 1.72 0.00 0.00 1.69 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 1.30 0.00 0.00 2.13 0.00 0.00 0.00 0.00 1.79 0.00 1.79 1.92 2.04 1.72 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Anxb11,I_chrX_16314152_16314405,I_chrX_16314152_16315813 chrX - chrX_16313083_16316199 chrX_16313082_16313083;chrX_16316199_16316200 chrX_16312701_16313082;chrX_16316200_16316269 100.00 NA NA 100.00 NA NA 90.91 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA 88.89 NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA 87.50 100.00 NA NA NA NA NA 88.89 NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K multi_cassette Mical,I_chr3R_5834577_5835458,RI_chr3R_5842549_5844218,I_chr3R_5843939_5844218,I_chr3R_5847106_5863537,I_chr3R_5863483_5863537,I_chr3R_5863613_5868513 chr3R - chr3R_5841649_5844218 chr3R_5841649_5842011;chr3R_5842549_5843294;chr3R_5843562_5844218 chr3R_5842012_5842548;chr3R_5843295_5843561 chr3R_5841385_5841648;chr3R_5844219_5844280 20.00 66.67 50.00 NA NA 66.67 11.11 NA 12.50 66.67 NA 14.29 NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA 16.67 20.00 NA NA 22.22 20.00 NA NA NA NA 12.50 11.11 NA 12.50 NA NA NA 33.33 NA 33.33 NA NA 16.67 NA NA NA NA NA NA 66.67 K jcn_only_AA Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8462792_8463253 chr3L_8462792_8463187 chr3L_8462665_8462791;chr3L_8463254_8463287 67.69 NA NA 65.38 NA NA NA NA 55.00 NA NA 76.19 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 70.00 NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Sp212 chr3R - chr3R_10049531_10049803 chr3R_10049531_10049603 chr3R_10049365_10049530;chr3R_10049804_10049846 96.00 100.00 93.94 98.36 92.50 95.83 97.14 95.52 93.22 90.62 100.00 98.39 91.67 95.92 97.62 94.23 92.31 100.00 94.74 97.92 96.77 95.79 98.57 90.77 100.00 93.55 100.00 NA 98.18 95.52 96.67 92.31 96.19 94.20 95.38 100.00 98.33 95.56 93.44 92.91 92.42 96.08 91.67 96.97 95.83 91.14 96.88 91.11 98.02 96.83 96.72 95.12 100.00 96.30 98.11 92.31 98.65 97.87 K intron_retention Pvf2 chr2L - chr2L_7074357_7083185 chr2L_7074356_7074357;chr2L_7083185_7083186 chr2L_7074254_7074356;chr2L_7083186_7083728 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.47 0.00 0.00 0.00 2.22 0.00 0.00 1.33 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.96 0.61 0.00 0.00 0.00 0.00 0.60 0.00 0.88 0.00 0.33 0.00 0.66 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.32 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG12400,Mad chr2L - chr2L_3145250_3145304 chr2L_3145249_3145250;chr2L_3145304_3145305 chr2L_3144953_3145249;chr2L_3145305_3145448 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 6.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 1.19 0.00 0.68 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention msn,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2564756_2565600 chr3L_2564755_2564756;chr3L_2565600_2565601 chr3L_2564737_2564755;chr3L_2565601_2565613 7.69 0.00 0.00 11.43 NA 15.38 25.00 11.43 7.89 NA NA 10.00 19.05 NA 10.53 12.00 NA 0.00 0.00 7.69 NA 13.04 5.88 6.06 NA 9.09 6.90 20.00 8.33 7.32 6.45 26.67 8.33 10.53 10.53 6.52 0.00 4.76 0.00 5.88 22.22 8.33 NA 2.63 3.70 0.00 NA 5.36 17.24 NA 0.00 7.69 0.00 NA 10.00 0.00 NA 11.76 K jcn_only_AD Dscam,I_chr2R_3211474_3212074,I_chr2R_3212243_3212342,F_chr2R_3219886_3228832,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3211474_3212086 chr2R_3211474_3212074 chr2R_3211374_3211473;chr2R_3212087_3212174 0.00 0.00 0.00 4.17 NA 0.00 NA NA 5.26 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA 3.50 0.00 0.00 NA NA NA 4.55 2.17 0.00 0.00 NA 4.69 0.00 3.85 3.23 2.13 0.00 0.00 0.00 NA 0.00 NA 2.08 2.86 0.00 5.71 4.88 0.00 8.70 0.00 0.00 0.00 0.00 9.52 0.00 3.85 0.00 N cassette CG40451 chr3RHet - chr3RHet_1814046_1823714 chr3RHet_1814046_1823434;chr3RHet_1823613_1823714 chr3RHet_1823435_1823612 chr3RHet_1813560_1814045;chr3RHet_1823715_1824080 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 91.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Zyx102EF,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1080463_1081038 chr4_1080462_1080463;chr4_1081038_1081039 chr4_1080446_1080462;chr4_1081039_1081260 8.61 11.76 4.35 6.00 NA 14.29 12.50 9.30 19.23 NA 0.00 16.67 8.33 0.00 5.56 11.76 12.50 5.26 0.00 6.45 NA NA 8.33 11.11 NA 0.00 12.00 13.33 13.33 0.00 0.00 NA 0.00 8.89 NA NA NA 0.00 NA 16.67 12.50 5.77 14.29 13.33 NA 0.00 NA 14.29 4.44 17.65 7.41 14.29 NA NA 9.09 NA 0.00 0.00 K intron_retention Mef2,I_chr2R_5804418_5804961,I_chr2R_5806354_5806933,CREFI_chr2R_5809509_5845628,I_chr2R_5814375_5816404,RI_chr2R_5846889_5846948 chr2R - chr2R_5805037_5805442 chr2R_5805036_5805037;chr2R_5805442_5805443 chr2R_5804962_5805036;chr2R_5805443_5805858 0.00 NA NA NA NA NA NA 21.43 11.76 0.00 NA NA NA NA NA NA NA NA NA 7.69 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 12.50 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA 4.76 0.00 NA 0.00 27.27 NA NA NA 0.00 NA NA NA NA 1.92 K alternative_acceptor Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045275_16045854;chr3L_16045275_16046111 chr3L_16045275_16046104 chr3L_16045255_16045274;chr3L_16046112_16046204 43.75 50.00 39.13 51.43 53.33 50.00 54.55 48.48 48.48 15.79 45.45 44.44 47.06 55.56 38.46 45.65 50.00 42.31 54.55 38.89 50.00 40.82 48.39 50.00 43.75 48.39 42.86 24.00 52.17 40.74 40.74 40.00 37.50 50.00 45.83 35.56 36.00 30.77 37.50 43.90 43.75 48.00 42.31 39.29 42.86 47.62 37.50 36.96 60.42 50.00 42.31 42.86 43.75 42.86 54.29 44.44 25.00 39.13 K intron_retention CG11266,RI_chr2L_7033019_7034764,I_chr2L_7034274_7034764,I_chr2L_7034274_7035406,I_chr2L_7051093_7051366 chr2L + chr2L_7034694_7034764 chr2L_7034693_7034694;chr2L_7034764_7034765 chr2L_7034638_7034693;chr2L_7034765_7034823 22.08 NA 25.00 61.54 NA NA 33.33 19.35 23.33 NA NA 17.14 0.00 42.86 25.00 29.17 NA NA NA 26.09 NA NA NA NA NA NA NA NA NA NA 20.83 NA NA 34.38 NA NA NA NA NA 14.29 NA 16.67 18.75 NA NA NA NA NA 18.52 NA NA NA NA NA 17.65 NA NA NA K alternative_last_exon Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5006553_5009240;chr2R_5006553_5008598,chr2R_5006553_5008568,chr2R_5006553_5008282,chr2R_5006553_5007804 chr2R_5006553_5007257 chr2R_5009241_5009953;chr2R_5008599_5008637 chr2R_5007258_5007336 chr2R_5006405_5006552 0.00 0.00 0.00 3.45 0.00 0.00 0.00 3.03 4.76 0.00 14.29 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 4.08 7.14 0.00 0.00 3.23 4.00 0.00 4.35 6.25 5.26 4.55 0.00 4.55 8.00 0.00 0.00 7.14 0.00 2.94 0.00 5.26 5.56 0.00 0.00 0.00 0.00 0.00 3.45 4.76 2.56 2.78 0.00 8.70 0.00 3.03 4.00 0.00 0.00 0.00 K intron_retention CG33232,I_chr3L_2484838_2495010,CG1146 chr3L + chr3L_2490489_2490979 chr3L_2490488_2490489;chr3L_2490979_2490980 chr3L_2490385_2490488;chr3L_2490980_2492250 58.33 NA NA 52.63 NA NA 66.67 76.92 51.72 NA NA 80.00 NA 60.00 NA 50.00 NA NA 66.67 58.33 NA 41.67 66.67 41.67 NA NA NA 90.00 NA NA NA NA NA 60.00 33.33 NA NA NA NA 46.67 NA 52.94 NA 37.50 NA 58.33 41.67 NA 65.00 NA NA 71.43 NA 46.15 58.33 35.71 69.23 NA K cassette MBD-like chr3R + chr3R_5385754_5386644 chr3R_5385754_5385993;chr3R_5386336_5386644 chr3R_5385994_5386335 chr3R_5385501_5385753;chr3R_5386645_5387357 2.35 2.27 2.50 1.72 0.00 2.56 0.00 1.64 1.83 5.00 0.00 3.85 4.35 4.00 2.08 5.26 0.00 2.63 0.00 0.79 0.00 4.44 2.60 0.00 2.56 3.45 1.59 6.82 5.56 1.72 3.12 1.67 5.06 0.00 0.00 8.33 2.65 1.30 3.95 3.75 3.28 2.35 2.94 4.76 6.02 2.30 1.64 4.29 0.96 2.60 1.72 2.08 1.72 2.08 2.94 1.54 1.04 4.21 K jcn_only_AD Sap47,I_chr3R_11777573_11777784 chr3R + chr3R_11777564_11779879 chr3R_11777573_11779879 chr3R_11779880_11779956;chr3R_11777555_11777563 84.72 74.36 74.19 75.00 84.85 74.19 NA 71.79 91.30 87.10 88.00 86.49 NA 81.48 77.14 NA 85.71 90.91 86.67 78.05 81.48 76.92 76.92 82.14 81.13 NA 90.91 100.00 79.07 85.71 89.74 75.61 74.63 89.66 87.50 77.14 89.16 71.70 72.88 74.03 83.33 85.19 NA 85.51 91.07 80.88 86.00 81.72 85.96 81.48 86.27 87.80 69.39 84.62 85.71 88.57 95.00 84.81 K jcn_only_AD Pi3K21B,I_chr2L_301774_302025,I_chr2L_301945_302025 chr2L + chr2L_301774_302025;chr2L_299919_302025 chr2L_301945_302025 chr2L_302026_302125;chr2L_299033_299918 2.34 2.00 1.45 2.91 2.38 1.92 3.45 0.94 1.20 4.69 0.00 2.34 0.00 0.00 1.92 3.33 4.55 1.41 1.85 0.70 2.50 5.81 1.82 3.33 5.36 4.92 5.88 4.71 5.17 1.85 2.78 5.71 1.72 0.00 11.63 4.08 1.00 5.63 9.09 0.79 3.45 0.76 0.00 1.20 NA 0.00 4.17 0.00 0.00 5.00 4.05 5.56 0.00 0.00 5.75 3.70 NA 0.00 K jcn_only_AD mfrn,I_chr3R_23770737_23770817,I_chr3R_23771063_23772599 chr3R - chr3R_23770737_23770817 chr3R_23770737_23770798 chr3R_23770669_23770736;chr3R_23770818_23770917 100.00 99.37 100.00 99.19 98.17 99.12 99.42 100.00 99.62 100.00 98.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.46 100.00 100.00 99.60 100.00 98.79 100.00 99.54 100.00 100.00 99.24 99.47 100.00 98.37 100.00 100.00 100.00 100.00 100.00 99.28 99.20 99.17 99.50 100.00 100.00 99.17 100.00 99.44 97.85 100.00 99.05 99.51 99.20 100.00 100.00 99.14 99.21 99.58 100.00 K intron_retention ytr,RI_chr2R_19738391_19738783 chr2R - chr2R_19738391_19738456 chr2R_19738390_19738391;chr2R_19738456_19738457 chr2R_19738291_19738390;chr2R_19738457_19738625 2.01 2.50 2.67 4.46 0.00 3.28 5.48 0.00 3.31 3.33 0.00 3.85 0.00 0.00 NA 0.00 0.00 3.85 0.00 0.84 0.00 7.96 3.12 1.50 8.33 10.00 7.22 6.72 11.34 0.00 0.00 3.70 0.00 0.00 1.94 8.82 4.35 0.00 4.48 1.49 4.62 3.09 0.00 1.54 2.23 3.33 5.08 1.75 1.50 4.95 1.94 1.72 1.53 3.12 1.94 1.92 2.08 1.42 K intron_retention Pms2,I_chr2R_11257708_11257764 chr2R - chr2R_11258334_11258400 chr2R_11258333_11258334;chr2R_11258400_11258401 chr2R_11257765_11258333;chr2R_11258401_11258544 0.00 0.00 0.00 11.76 NA 0.00 0.00 8.70 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA 5.00 5.56 NA NA 12.50 NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA 0.00 9.09 NA 9.09 NA NA NA NA 0.00 NA 16.00 0.00 4.55 NA NA NA 13.33 NA NA NA K alternative_donor CG14182,RI_chr3L_19972689_19972802 chr3L - chr3L_19972689_19972802 chr3L_19972689_19972756 chr3L_19972589_19972688;chr3L_19972803_19972902 88.46 84.62 83.33 75.00 NA NA 80.00 100.00 81.25 NA NA 83.33 100.00 NA 90.00 90.91 NA 100.00 87.50 95.45 100.00 80.77 93.75 91.67 63.64 100.00 100.00 60.00 93.33 88.24 NA 73.33 90.00 90.91 55.56 87.50 94.74 92.86 89.47 93.33 87.50 91.67 NA 94.44 85.71 94.12 81.82 88.46 73.33 83.33 75.00 85.71 90.91 66.67 88.89 83.33 93.33 88.24 K intron_retention l(2)03709,I_chr2R_14707617_14707700,I_chr2R_14708048_14708095 chr2R + chr2R_14707030_14707125 chr2R_14707029_14707030;chr2R_14707125_14707126 chr2R_14707024_14707029;chr2R_14707126_14707270 18.42 20.00 8.82 9.62 8.14 8.22 25.42 7.94 7.78 43.59 8.70 14.19 8.00 14.04 9.76 11.69 4.55 5.88 9.47 11.76 5.49 33.87 52.63 46.88 42.86 25.33 80.95 61.54 50.00 33.33 12.78 7.55 3.17 10.40 42.86 81.25 43.24 28.57 29.63 19.72 25.00 6.88 7.41 27.27 4.07 31.11 68.42 16.92 10.78 56.00 41.18 35.29 18.42 82.35 7.14 45.00 33.33 8.14 K jcn_only_AA Rpb4 chr3R - chr3R_14080814_14081038;chr3R_14080959_14081038 chr3R_14080914_14081038 chr3R_14081039_14081173;chr3R_14080097_14080813 98.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 96.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention sax,CG1882 chr2R + chr2R_3700197_3700785 chr2R_3700196_3700197;chr2R_3700785_3700786 chr2R_3700011_3700196;chr2R_3700786_3702250 81.63 73.08 82.76 85.71 87.50 72.73 85.51 89.29 79.31 87.18 95.45 88.73 81.48 85.19 73.53 81.63 81.25 75.00 79.41 79.52 84.62 60.19 84.29 74.14 81.67 84.85 72.46 89.04 85.71 85.00 76.12 84.38 77.14 92.68 78.57 84.00 79.59 71.79 78.87 87.67 77.19 79.66 86.96 86.57 76.09 79.17 87.50 86.21 77.42 80.43 77.78 80.49 87.50 75.76 85.29 84.44 79.55 84.21 K intron_retention EDTP chr2R - chr2R_13320214_13320278 chr2R_13320213_13320214;chr2R_13320278_13320279 chr2R_13319615_13320213;chr2R_13320279_13320629 1.02 0.00 0.00 21.62 0.00 NA 5.13 3.85 10.71 NA NA 3.03 NA 9.09 3.45 13.79 NA 0.00 5.88 6.67 8.00 3.33 0.00 0.00 4.00 8.33 13.04 10.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 6.45 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 2.94 4.65 0.00 0.00 2.94 0.00 0.00 NA NA 5.88 0.00 6.67 0.00 2.04 K intron_retention CG7627 chr2L - chr2L_8361199_8362283 chr2L_8361198_8361199;chr2L_8362283_8362284 chr2L_8361101_8361198;chr2L_8362284_8362421 2.94 4.35 6.90 4.00 NA 5.26 14.81 0.00 7.14 7.14 NA 4.65 NA 8.33 0.00 3.77 NA 14.29 0.00 13.79 NA 0.00 2.17 0.00 4.76 NA 2.94 11.76 0.00 8.00 0.00 NA 12.00 6.82 0.00 9.68 NA 0.00 0.00 8.11 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 7.32 NA 0.00 0.00 NA NA NA NA 0.00 0.00 K intron_retention CG3016 chrX - chrX_5771581_5771638 chrX_5771580_5771581;chrX_5771638_5771639 chrX_5771029_5771580;chrX_5771639_5771838 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 1.12 0.00 0.00 0.00 0.00 0.00 0.00 6.06 8.00 3.12 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Hsc70-4,EI_chr3R_11068693_11068772 chr3R + chr3R_11068693_11068772 chr3R_11068692_11068693;chr3R_11068772_11068773 chr3R_11068632_11068692;chr3R_11068773_11068872 95.24 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA 88.89 95.24 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG10737 chr2R + chr2R_15062814_15063752;chr2R_15062814_15063770 chr2R_15062814_15063692 chr2R_15062592_15062813;chr2R_15063771_15063852 94.53 93.16 92.25 94.23 94.44 93.58 76.74 94.09 93.09 89.58 94.90 95.24 95.54 92.38 92.98 97.04 94.64 96.38 94.92 94.03 90.32 90.83 96.32 95.97 96.10 97.60 98.18 89.66 94.12 96.15 95.06 93.67 91.54 95.38 96.63 97.62 97.76 93.33 94.97 96.27 95.24 93.95 92.93 96.32 81.98 96.30 95.35 93.55 93.46 98.97 95.04 90.59 92.59 96.33 95.71 94.53 94.26 93.75 K intron_retention I_chr3R_261173_261244,CG14650,RI_chr3R_265878_265942 chr3R + chr3R_265693_265748 chr3R_265692_265693;chr3R_265748_265749 chr3R_265539_265692;chr3R_265749_265873 0.00 0.00 2.86 0.00 0.00 0.00 2.22 1.69 0.00 0.00 0.00 3.64 0.00 0.00 2.17 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 6.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 K alternative_donor CG17490 chr2L + chr2L_22431120_22432684;chr2L_22431020_22432684;chr2L_22431301_22432684 chr2L_22431088_22432684 chr2L_22432685_22433056;chr2L_22431014_22431019 3.70 9.52 3.70 10.71 15.00 8.70 12.77 4.17 1.75 0.00 0.00 2.13 8.00 3.70 3.23 9.88 4.00 4.00 9.68 4.08 4.35 4.35 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 3.92 8.33 0.00 7.41 0.00 10.00 0.00 0.00 0.00 5.41 0.00 2.04 7.41 3.12 0.00 0.00 0.00 0.00 5.08 13.64 3.85 0.00 5.26 14.29 2.63 0.00 4.00 6.67 K intron_retention CG14235,noncoding_24847,CG18809,noncoding_24848 chrX - chrX_19635199_19638032 chrX_19635198_19635199;chrX_19638032_19638033 chrX_19634765_19635198;chrX_19638033_19638057 81.25 92.31 80.00 87.50 85.71 77.78 81.25 78.95 85.71 NA 90.00 92.00 90.00 63.64 81.25 77.78 90.00 92.31 NA 84.85 77.78 94.12 71.43 75.00 NA 66.67 88.89 90.00 90.00 72.73 57.14 56.25 84.62 92.86 88.89 NA 91.67 NA 84.62 60.00 54.55 72.73 60.00 52.94 60.87 80.95 72.73 76.47 83.33 73.33 90.00 NA 92.86 84.62 90.91 73.33 52.38 62.50 K intron_retention dpr3 chr2L - chr2L_2066598_2066741 chr2L_2066597_2066598;chr2L_2066741_2066742 chr2L_2066520_2066597;chr2L_2066742_2067160 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.72 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Flo-2 chrX + chrX_14818447_14820798 chrX_14818446_14818447;chrX_14820798_14820799 chrX_14818259_14818446;chrX_14820799_14820907 6.15 0.00 8.00 14.81 3.23 5.41 6.98 7.27 11.29 9.09 0.00 11.43 9.09 7.14 6.82 4.76 8.33 0.00 5.26 10.94 0.00 2.70 6.06 3.85 NA 0.00 5.26 NA 0.00 9.38 10.26 8.00 9.43 4.35 0.00 3.33 6.98 3.85 5.41 10.87 11.11 4.29 0.00 6.25 5.26 5.71 8.00 14.81 7.94 0.00 13.64 0.00 9.52 NA 0.00 6.67 0.00 9.09 K cassette CG3164,I_chr2L_125267_126140,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_125267_128799 chr2L_125267_126109;chr2L_126228_128799 chr2L_126110_126227 chr2L_125167_125266;chr2L_128800_128899 99.51 100.00 100.00 98.79 99.33 100.00 99.63 100.00 99.73 98.56 100.00 99.13 99.28 99.40 100.00 100.00 100.00 100.00 99.42 99.71 100.00 99.09 99.61 99.53 97.28 97.70 99.10 99.34 99.50 99.35 99.39 100.00 99.46 99.63 99.32 99.38 99.19 99.47 98.79 99.51 99.22 100.00 100.00 100.00 100.00 100.00 99.25 100.00 100.00 98.64 100.00 99.30 100.00 100.00 99.51 99.16 99.22 100.00 K intron_retention sgl chr3L - chr3L_6955050_6957496 chr3L_6955049_6955050;chr3L_6957496_6957497 chr3L_6954911_6955049;chr3L_6957497_6957953 0.00 0.00 0.00 0.54 0.00 0.71 1.01 0.45 0.44 0.00 0.80 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.79 1.16 0.27 0.00 0.00 0.00 1.27 1.54 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.69 0.65 0.00 0.25 0.55 0.00 0.15 0.00 0.28 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 K alternative_donor psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6456758_6457578 chr2R_6456884_6457578 chr2R_6457579_6457647;chr2R_6456747_6456757 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA K alternative_donor Nrg,I_chrX_8411470_8425729,RI_chrX_8411636_8425729,RI_chrX_8412432_8425557 chrX + chrX_8411668_8425729;chrX_8411543_8425729 chrX_8411454_8425729 chrX_8425730_8425829;chrX_8411428_8411453 87.50 92.31 NA 100.00 NA NA 81.82 92.86 81.08 NA NA 100.00 87.50 85.71 NA 87.50 80.00 NA NA 90.48 NA NA 80.00 NA NA NA NA NA NA NA 100.00 NA 86.67 86.96 NA NA NA NA NA 87.50 NA 88.89 90.00 NA NA NA NA 72.73 90.00 NA NA NA NA NA 87.50 NA NA 81.82 K intron_retention CG3803,RI_chr2R_19840910_19840971 chr2R - chr2R_19841105_19841161 chr2R_19841104_19841105;chr2R_19841161_19841162 chr2R_19840972_19841104;chr2R_19841162_19841264 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 6.25 0.00 NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA 11.11 0.00 0.00 10.53 0.00 NA 0.00 0.00 5.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.94 NA 5.26 0.00 0.00 0.00 4.76 0.00 9.09 0.00 NA NA 0.00 NA 0.00 0.00 5.00 K jcn_only_AA mthl5 chr3R - chr3R_7710606_7710663 chr3R_7710609_7710663 chr3R_7710664_7710845;chr3R_7710105_7710605 15.00 NA 10.00 22.22 NA 20.83 9.38 13.79 11.63 NA NA 30.77 NA 15.00 19.05 21.88 5.00 NA 3.57 8.00 NA 4.55 14.29 13.79 NA 20.00 13.64 NA NA 12.50 NA NA NA 11.36 31.82 8.70 14.81 25.93 10.00 21.74 NA 22.86 25.00 16.13 NA 16.67 31.03 NA 19.05 18.18 11.90 10.00 NA 17.86 16.13 20.83 7.41 NA K intron_retention CG8632,CG8646 chr2R + chr2R_8542729_8542788 chr2R_8542728_8542729;chr2R_8542788_8542789 chr2R_8542654_8542728;chr2R_8542789_8542902 0.00 2.70 0.00 0.00 0.00 5.26 5.56 10.26 7.27 NA 0.00 11.63 12.00 0.00 2.56 2.33 0.00 0.00 0.00 1.96 0.00 6.67 0.00 3.85 0.00 6.25 0.00 0.00 17.95 0.00 0.00 0.00 0.00 2.27 2.86 0.00 0.00 0.00 0.00 2.56 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 N alternative_donor noncoding_4622,CE_chr2R_2237053_2237111 chr2R - chr2R_2237036_2237090;chr2R_2237036_2237086 chr2R_2237036_2237093 chr2R_2236997_2237035;chr2R_2237094_2237159 40.45 0.00 48.57 NA 50.00 0.00 36.08 38.89 41.77 47.06 0.00 48.98 41.94 55.00 0.00 0.00 40.91 54.55 34.62 46.67 44.44 45.31 0.00 35.00 NA 0.00 NA 36.84 38.78 27.91 44.44 38.89 38.78 40.00 50.00 44.44 45.24 55.56 54.84 29.63 42.86 41.30 41.38 54.29 56.25 50.00 0.00 41.03 28.57 0.00 35.71 0.00 30.00 0.00 34.62 0.00 41.67 48.00 K intron_retention Vps16A chr3R + chr3R_5095606_5095665 chr3R_5095605_5095606;chr3R_5095665_5095666 chr3R_5095016_5095605;chr3R_5095666_5095919 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.00 3.70 2.38 0.83 0.00 0.00 2.33 0.49 0.00 0.00 1.15 0.00 0.00 0.00 6.49 7.89 3.00 0.00 2.44 0.00 0.00 3.31 0.00 1.11 0.00 0.00 0.00 0.60 0.00 1.79 0.00 0.00 0.00 1.55 0.00 0.66 1.48 1.05 1.03 0.00 0.00 2.20 0.00 0.00 1.43 0.00 K cassette plexA,I_chr4_1035140_1035208,I_chr4_1035153_1035403,RI_chr4_1036247_1047588,RI_chr4_1040642_1047395,RF_chr4_1044307_1047399 chr4 - chr4_1035153_1035403 chr4_1035153_1035208;chr4_1035355_1035403 chr4_1035209_1035354 chr4_1035146_1035152;chr4_1035404_1035471 99.22 98.31 100.00 98.44 98.00 100.00 99.22 99.31 99.41 100.00 100.00 97.16 98.53 100.00 98.68 99.23 98.65 98.31 98.88 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 97.06 96.43 97.67 98.91 100.00 100.00 98.48 97.50 95.56 100.00 100.00 98.15 98.18 100.00 99.28 98.46 100.00 100.00 98.53 98.39 100.00 97.30 98.67 100.00 97.83 100.00 100.00 98.90 98.39 98.67 100.00 K intron_retention CG11539 chr3R - chr3R_27440907_27440963 chr3R_27440906_27440907;chr3R_27440963_27440964 chr3R_27440838_27440906;chr3R_27440964_27441478 94.25 91.67 90.00 93.33 NA NA 93.75 93.75 94.74 NA NA 100.00 83.33 100.00 100.00 95.45 NA NA 92.31 89.47 NA 90.91 93.75 100.00 NA NA 100.00 90.91 100.00 92.86 90.00 100.00 100.00 93.75 100.00 100.00 91.67 NA 88.89 95.00 95.00 92.31 NA 100.00 93.75 95.83 93.75 100.00 87.50 94.74 100.00 100.00 100.00 91.67 88.89 93.75 100.00 100.00 K intron_retention CG6422,RI_chr3R_20863994_20864142 chr3R - chr3R_20864602_20864665 chr3R_20864601_20864602;chr3R_20864665_20864666 chr3R_20864568_20864601;chr3R_20864666_20864739 0.00 NA NA 13.33 NA NA 0.00 NA 15.00 NA NA 11.76 NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA 5.26 NA 0.00 NA NA NA NA NA NA 14.29 K alternative_acceptor CG3760,CG3770,CG12851 chr2R + chr2R_20826741_20826796;chr2R_20826741_20826799 chr2R_20826741_20826793 chr2R_20826672_20826740;chr2R_20826800_20826860 82.26 90.24 86.11 86.11 77.42 68.42 88.00 78.95 80.95 78.79 76.92 87.10 100.00 82.61 70.59 87.50 65.52 80.00 84.21 81.54 75.86 85.11 75.86 85.29 83.33 81.48 77.55 80.00 78.12 80.95 82.61 84.78 79.37 76.00 75.51 81.58 82.26 89.19 84.93 88.57 84.91 77.92 77.27 85.71 82.61 82.56 81.82 86.44 72.06 84.88 85.07 85.29 84.91 83.33 80.65 79.69 82.89 80.23 K intron_retention Nedd4,I_chr3L_17532828_17532882,I_chr3L_17532828_17533787,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17532828_17532882 chr3L_17532827_17532828;chr3L_17532882_17532883 chr3L_17532728_17532827;chr3L_17532883_17532982 87.50 87.50 100.00 33.33 NA NA NA NA 92.31 NA NA 92.86 NA NA NA NA NA 45.45 NA 84.62 NA 66.67 93.75 100.00 63.64 NA 90.00 NA NA NA NA NA 88.89 NA NA NA 88.24 87.50 92.31 63.64 NA 66.67 NA 90.91 NA NA NA 73.33 NA NA 66.67 NA NA NA NA NA NA NA K intron_retention CG13384 chr2L + chr2L_8386386_8386483 chr2L_8386385_8386386;chr2L_8386483_8386484 chr2L_8386217_8386385;chr2L_8386484_8387378 8.72 7.61 9.48 9.96 12.27 9.57 11.68 9.82 10.79 4.76 9.66 10.80 11.16 12.72 10.60 12.11 9.55 9.55 11.21 8.85 10.33 4.71 8.46 7.74 8.21 10.48 8.33 7.48 5.26 6.03 10.69 8.72 5.77 10.80 8.75 7.66 6.75 6.30 8.98 7.00 6.07 9.70 12.78 7.17 6.06 7.85 6.70 8.11 10.22 10.26 8.31 7.18 7.32 5.98 11.07 7.92 7.80 4.74 K alternative_donor l(2)37Cc,l(2)37Cb chr2L - chr2L_19122818_19123177 chr2L_19122818_19123120 chr2L_19122040_19122817;chr2L_19123178_19123556 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.69 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD RpL35,I_chrX_5566913_5567030,I_chrX_5567168_5567220 chrX + chrX_5566913_5567030;chrX_5566909_5567030 chrX_5566556_5567030 chrX_5567031_5567130;chrX_5566554_5566555 6.11 3.81 5.99 6.51 10.07 7.32 5.78 6.57 8.66 7.90 9.19 6.72 7.15 5.64 7.74 3.50 8.72 6.11 5.44 5.31 7.27 4.83 3.57 5.11 5.59 6.28 2.41 8.85 3.64 7.44 3.73 7.54 18.01 5.39 5.68 2.83 9.95 6.68 8.89 23.41 3.94 8.73 5.81 11.54 8.13 3.04 3.85 5.41 5.80 3.62 1.92 8.82 10.89 1.86 6.57 3.60 3.96 7.91 K intron_retention alt chr3R - chr3R_13501256_13501363 chr3R_13501255_13501256;chr3R_13501363_13501364 chr3R_13500797_13501255;chr3R_13501364_13501459 3.23 14.29 3.85 0.00 0.00 0.00 0.00 13.33 5.77 NA NA 8.33 6.25 12.50 7.14 5.26 0.00 7.69 NA 3.28 NA 4.17 4.76 NA 0.00 NA 9.09 5.71 NA 8.00 3.28 0.00 0.00 8.33 0.00 0.00 3.23 0.00 0.00 2.70 0.00 3.92 10.53 3.45 0.00 0.00 3.23 0.00 7.69 0.00 0.00 NA 0.00 0.00 8.33 0.00 0.00 0.00 K jcn_only_AA Klc,I_chr3L_12741779_12743062,I_chr3L_12741783_12742943,I_chr3L_12741838_12743062 chr3L - chr3L_12741838_12743062;chr3L_12741783_12743062 chr3L_12741779_12743062 chr3L_12743063_12743083;chr3L_12741738_12741778 1.60 0.78 1.18 2.25 0.79 0.00 2.42 0.79 2.04 3.51 1.92 2.62 0.57 1.41 1.40 3.75 2.80 2.33 2.25 2.30 1.22 0.59 1.76 2.00 3.41 1.60 3.33 0.00 2.44 4.76 2.00 1.39 5.77 0.76 0.00 1.90 0.00 1.11 0.86 1.57 0.00 1.39 1.60 1.35 4.69 1.32 3.59 4.44 2.81 2.42 0.65 0.80 0.00 1.37 0.00 1.44 2.40 2.25 K jcn_only_AA Adk1,RI_chr3L_12194215_12194473,I_chr3L_12197507_12197558 chr3L - chr3L_12194190_12194473 chr3L_12194215_12194473 chr3L_12194474_12194573;chr3L_12194115_12194189 0.00 0.00 NA 5.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA 4.76 3.33 NA 0.00 NA NA NA 0.00 NA 0.00 6.45 0.00 3.12 2.63 0.00 4.55 0.00 NA NA 0.00 0.00 0.00 NA 8.33 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 K alternative_acceptor SC35,I_chr2L_12432222_12432308 chr2L - chr2L_12432205_12432308 chr2L_12432222_12432308 chr2L_12432309_12432408;chr2L_12432122_12432204 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.41 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.42 0.46 0.00 0.00 0.74 0.97 0.00 0.00 0.00 0.00 K jcn_only_AD M(2)21AB,I_chr2L_107839_110405,I_chr2L_107957_108587,I_chr2L_110878_111037,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_108347_108587;chr2L_108102_108587;chr2L_107839_108587 chr2L_108227_108587 chr2L_108588_108687;chr2L_107833_107838 82.78 79.19 86.36 82.42 92.71 88.59 85.42 74.74 88.84 80.71 77.65 89.16 91.22 82.47 90.27 84.65 86.99 88.46 83.68 85.67 74.43 90.22 84.70 84.99 79.05 82.78 75.09 78.13 82.86 79.41 86.64 71.79 65.16 86.23 83.51 65.54 89.70 82.03 80.51 76.94 67.02 86.60 82.12 92.27 82.11 79.38 84.07 79.01 89.47 79.66 81.94 88.92 81.43 81.82 87.73 88.26 81.22 79.05 K alternative_donor vig2 chr3R + chr3R_20950813_20950905 chr3R_20950846_20950905 chr3R_20950906_20950919;chr3R_20950756_20950812 100.00 100.00 99.20 100.00 99.09 100.00 100.00 100.00 100.00 100.00 99.01 100.00 100.00 100.00 99.36 98.91 100.00 100.00 99.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.12 100.00 99.63 100.00 100.00 100.00 100.00 99.61 99.65 99.51 100.00 99.59 100.00 99.27 100.00 100.00 100.00 100.00 100.00 100.00 99.53 100.00 100.00 100.00 99.30 100.00 99.69 100.00 K intron_retention Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8103504_8105691 chr2L_8103503_8103504;chr2L_8105691_8105692 chr2L_8103450_8103503;chr2L_8105692_8105782 40.91 NA NA NA NA NA NA 66.67 NA 0.00 NA 45.45 NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention spz chr3R - chr3R_22892922_22894865 chr3R_22892921_22892922;chr3R_22894865_22894866 chr3R_22892844_22892921;chr3R_22894866_22895053 4.39 6.98 1.92 6.54 2.63 4.44 31.43 6.86 5.56 12.50 0.00 4.72 12.68 5.26 2.04 4.48 7.14 4.17 3.33 1.94 2.22 6.67 4.35 6.98 10.00 4.44 3.77 NA 0.00 6.25 3.57 0.00 0.00 6.49 6.67 1.37 0.00 0.00 6.82 0.00 5.13 3.30 0.00 12.12 0.00 3.03 2.44 7.69 8.08 7.14 5.66 6.67 0.00 0.00 5.00 0.00 2.90 0.00 K intron_retention wge chr3R - chr3R_18542390_18542655 chr3R_18542389_18542390;chr3R_18542655_18542656 chr3R_18540256_18542389;chr3R_18542656_18542685 75.25 NA NA NA NA NA 87.50 NA 90.91 NA NA NA NA NA NA NA NA NA NA 77.78 NA 59.09 NA NA NA NA NA NA NA NA NA NA NA NA NA 72.73 NA NA NA 57.14 NA 90.91 NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2392054 chrX_2387249_2388436;chrX_2388671_2389073;chrX_2389272_2390808;chrX_2390959_2391350;chrX_2391522_2392054 chrX_2388437_2388670;chrX_2389074_2389271;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2392055_2392148 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA 66.67 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG11560 chr3L + chr3L_12113689_12113754 chr3L_12113689_12113742 chr3L_12113202_12113688;chr3L_12113755_12114372 9.38 NA 4.55 11.54 NA NA NA 3.03 8.00 NA 20.00 8.70 NA NA 14.29 4.76 NA NA NA 7.32 NA 7.14 6.67 21.88 NA NA 15.00 NA NA NA NA 4.76 NA 11.11 NA 20.00 22.22 17.39 NA 20.69 12.00 3.12 NA NA NA 7.69 14.81 NA 10.71 7.69 8.70 NA 4.76 NA NA 9.09 9.68 18.18 K intron_retention As chr3L - chr3L_11200236_11200297 chr3L_11200235_11200236;chr3L_11200297_11200298 chr3L_11199522_11200235;chr3L_11200298_11200790 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG14408,I_chrX_14725709_14725773 chrX - chrX_14725700_14725773 chrX_14725709_14725773 chrX_14725774_14725873;chrX_14725637_14725699 0.00 7.69 3.85 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 2.56 NA 0.00 0.00 0.00 NA NA 4.55 0.00 0.00 0.00 2.08 5.56 NA NA 3.70 0.00 7.69 0.00 5.88 0.00 9.52 0.00 3.85 NA 0.00 0.00 0.00 7.41 NA 2.56 NA 0.00 0.00 11.11 NA 0.00 0.00 4.00 0.00 0.00 0.00 5.00 0.00 NA 0.00 NA K intron_retention msn,I_chr3L_2558033_2560115,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2558390_2560115 chr3L_2558389_2558390;chr3L_2560115_2560116 chr3L_2558293_2558389;chr3L_2560116_2560215 1.61 1.02 1.56 2.07 2.16 0.93 6.67 2.86 2.20 2.33 0.79 1.61 0.64 2.02 1.91 2.92 2.13 0.00 2.62 1.62 0.00 0.70 1.94 2.79 2.45 1.62 2.78 1.14 0.49 0.86 1.86 0.97 0.92 2.68 1.34 1.59 1.43 3.26 2.51 1.22 1.12 0.91 3.70 0.42 0.00 0.00 0.64 0.79 2.31 3.19 2.26 1.35 1.32 1.80 2.03 2.67 0.00 0.83 K intron_retention CG12795,noncoding_704,sec5,Pdsw chr2L + chr2L_3452672_3452739 chr2L_3452671_3452672;chr2L_3452739_3452740 chr2L_3452541_3452671;chr2L_3452740_3453039 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 1.82 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention l(1)G0289,I_chrX_10252037_10252118,I_chrX_10254197_10259575 chrX - chrX_10251847_10252118 chrX_10251846_10251847;chrX_10252118_10252119 chrX_10250322_10251846;chrX_10252119_10252218 0.46 0.76 0.45 1.76 0.00 0.00 0.00 1.35 0.99 0.00 0.00 1.04 3.39 1.40 0.89 0.00 0.00 0.58 0.76 0.81 0.63 1.02 0.00 1.14 1.69 0.00 0.89 1.02 0.49 0.00 0.72 0.65 0.00 0.37 0.00 0.00 0.46 0.72 0.62 1.51 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.81 0.86 0.32 0.69 0.00 0.00 0.00 0.46 0.47 0.00 0.00 K intron_retention ifc,noncoding_1271 chr2L + chr2L_5987495_5987615 chr2L_5987494_5987495;chr2L_5987615_5987616 chr2L_5987223_5987494;chr2L_5987616_5987779 28.57 28.57 21.74 50.00 NA 19.05 35.71 34.62 29.63 NA 14.29 28.57 28.57 15.00 12.50 40.54 25.00 33.33 26.32 25.00 NA 27.78 36.36 36.84 33.33 NA 35.71 36.36 NA NA 36.00 NA 29.41 36.84 31.25 NA 26.32 35.71 12.50 24.14 NA 23.68 14.29 12.50 NA 22.22 NA 23.53 30.00 NA 30.00 42.86 NA NA 20.00 14.29 NA NA K jcn_only_AA CG1646,I_chr3R_24640561_24640869,I_chr3R_24641816_24641874 chr3R + chr3R_24641449_24641521 chr3R_24641449_24641497 chr3R_24641204_24641448;chr3R_24641522_24641682 22.87 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 21.74 NA NA NA NA NA NA NA NA 28.85 27.27 10.00 NA 16.00 NA NA 27.59 NA NA NA 28.89 0.00 NA NA 24.00 16.67 13.64 NA 37.21 NA NA 13.64 NA NA NA NA NA NA 30.23 K cassette ras chrX + chrX_10638695_10639710 chrX_10638695_10638811;chrX_10639523_10639710 chrX_10638812_10639522 chrX_10638539_10638694;chrX_10639711_10639997 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 88.89 100.00 100.00 K alternative_last_exon Abi,RI_chr3R_9946195_9946332 chr3R - chr3R_9946195_9946416 chr3R_9946345_9946416 chr3R_9946007_9946194 chr3R_9946276_9946344 chr3R_9946417_9946432 2.11 2.17 2.97 7.41 2.17 2.33 1.00 3.51 1.35 0.00 2.97 0.62 0.00 2.99 1.96 2.38 2.60 2.22 0.00 2.82 1.10 1.33 0.00 3.57 2.08 1.03 2.80 6.42 0.94 1.87 1.00 1.28 3.33 2.72 4.40 1.96 2.12 3.85 3.05 1.66 0.00 2.20 1.47 3.03 1.60 0.68 3.17 2.11 1.16 0.55 2.38 1.19 2.24 1.63 0.00 3.23 2.56 0.95 K intron_retention cryptocephal,noncoding_4181,I_chr2L_21311307_21311752,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21311033_21311913 chr2L_21311032_21311033;chr2L_21311913_21311914 chr2L_21310948_21311032;chr2L_21311914_21312043 99.83 99.66 99.72 100.00 100.00 100.00 99.68 100.00 100.00 100.00 100.00 99.84 100.00 100.00 99.75 99.74 99.66 99.70 99.75 99.42 100.00 99.66 99.81 100.00 100.00 100.00 99.81 99.69 99.61 99.67 99.79 100.00 100.00 99.83 99.55 100.00 100.00 99.70 99.72 100.00 100.00 99.85 99.63 100.00 99.46 100.00 99.18 99.62 99.72 99.70 100.00 100.00 100.00 99.55 99.78 99.65 100.00 100.00 K alternative_donor RI_chrX_1796525_1796585,mip130,CG3573,I_chrX_1820956_1821011,CG11596 chrX + chrX_1820952_1821011 chrX_1820956_1821011 chrX_1821012_1821111;chrX_1820856_1820951 0.97 0.69 0.93 1.87 1.92 1.06 1.33 0.84 0.99 0.97 0.00 1.27 0.00 0.00 2.65 0.00 0.00 0.00 1.12 1.68 1.39 0.85 0.54 1.32 1.16 1.27 0.72 4.88 3.14 0.91 0.93 0.88 1.65 1.54 0.62 1.69 0.67 0.76 1.58 0.80 0.90 1.85 1.28 1.42 0.77 1.49 0.74 1.96 0.54 2.42 1.99 0.00 0.00 0.58 1.00 0.61 0.76 1.11 K intron_retention bmm,I_chr3L_14772123_14772190 chr3L - chr3L_14770342_14770438 chr3L_14770341_14770342;chr3L_14770438_14770439 chr3L_14770313_14770341;chr3L_14770439_14770707 16.34 NA NA 18.52 NA NA NA 19.35 17.65 NA NA 7.41 NA NA NA NA NA NA NA 16.00 NA 12.50 NA NA NA NA NA 7.69 NA NA NA 13.33 NA 14.29 NA NA NA NA NA 17.65 NA 24.00 NA 6.67 NA 23.53 NA 5.00 16.67 NA NA NA NA NA 17.65 NA NA NA K alternative_acceptor Vha26,I_chr3R_1417553_1417709,I_chr3R_1417761_1418260,I_chr3R_1417761_1418275,I_chr3R_1418045_1418289 chr3R + chr3R_1417761_1418289 chr3R_1417761_1418275 chr3R_1417710_1417760;chr3R_1418290_1418360 0.00 0.00 0.00 0.18 0.00 0.00 0.24 0.31 0.16 0.00 0.46 0.00 0.86 0.00 0.00 0.17 0.00 0.00 0.29 0.24 0.36 1.01 0.29 0.00 0.56 0.61 0.00 0.47 0.54 0.00 0.23 0.00 0.00 0.17 0.00 1.39 0.00 0.00 0.00 0.42 1.30 0.18 0.00 0.00 0.54 0.00 0.00 0.00 0.15 0.55 0.35 0.00 0.00 0.00 0.27 0.00 0.00 0.00 K intron_retention CG5037 chr2L + chr2L_10331931_10331987 chr2L_10331930_10331931;chr2L_10331987_10331988 chr2L_10331854_10331930;chr2L_10331988_10332345 6.15 6.98 7.41 10.53 4.76 4.88 15.07 1.43 5.56 0.00 20.59 4.00 4.65 6.12 6.25 7.41 2.63 16.28 0.00 7.34 15.38 4.17 5.56 7.55 5.41 4.17 7.04 8.70 8.00 7.41 6.15 9.52 0.00 7.27 0.00 23.08 6.56 4.26 8.93 9.38 0.00 8.11 3.45 5.17 10.81 12.20 4.76 0.00 5.88 12.77 4.17 0.00 10.53 5.71 8.89 9.76 0.00 0.00 K intron_retention CG32138 chr3L + chr3L_14060369_14060429 chr3L_14060368_14060369;chr3L_14060429_14060430 chr3L_14059499_14060368;chr3L_14060430_14060643 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pkc98E chr3R + chr3R_24871732_24871784 chr3R_24871731_24871732;chr3R_24871784_24871785 chr3R_24871592_24871731;chr3R_24871785_24872756 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.93 9.09 0.00 0.00 1.30 0.00 0.00 0.00 3.10 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 K alternative_donor CG1317 chr3L - chr3L_2368426_2368629 chr3L_2368426_2368620 chr3L_2368013_2368425;chr3L_2368630_2370048 21.10 13.89 27.78 45.24 27.27 21.43 33.33 22.95 20.90 28.57 8.82 22.54 16.67 24.24 18.18 19.72 16.00 18.18 21.28 26.03 12.50 18.37 23.26 15.69 23.53 23.08 23.21 29.55 24.39 16.28 21.15 30.65 20.69 17.65 17.65 53.85 15.69 18.75 15.38 23.68 21.10 19.40 21.43 12.16 40.00 28.21 21.05 39.47 19.51 15.69 35.29 20.00 20.69 33.33 18.75 14.52 16.95 23.48 K intron_retention Acon,I_chr2L_21168805_21170166 chr2L + chr2L_21171829_21171894 chr2L_21171828_21171829;chr2L_21171894_21171895 chr2L_21170191_21171828;chr2L_21171895_21172398 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CkIIalpha,I_chr3L_23092989_23093344,RI_chr3L_23094196_23095221 chr3L + chr3L_23093106_23095221;chr3L_23092824_23095221;chr3L_23090858_23095221 chr3L_23090858_23093344,chr3L_23093106_23093344,chr3L_23092824_23093344;chr3L_23093458_23095221 chr3L_23093345_23093457 chr3L_23090727_23090857;chr3L_23095222_23095321 43.18 41.46 52.63 33.33 28.57 39.29 30.14 43.21 36.07 29.41 45.16 38.89 23.81 58.54 40.62 52.70 39.02 70.83 43.18 41.38 55.56 60.71 56.00 33.33 30.00 40.00 28.95 40.74 61.11 60.00 42.42 65.00 81.82 40.58 61.54 64.29 33.33 47.83 40.00 59.18 55.00 46.55 53.33 35.29 54.55 65.62 40.62 82.14 39.44 39.02 47.50 36.36 54.55 61.54 54.76 38.24 30.61 76.47 K intron_retention SCAR,E_chr2L_10978982_10979632 chr2L + chr2L_10978707_10980444 chr2L_10978706_10978707;chr2L_10980444_10980445 chr2L_10977898_10978706;chr2L_10980445_10981112 0.00 0.00 0.00 0.56 0.00 0.80 0.00 1.09 0.42 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG9399,I_chr3R_5403032_5403329 chr3R - chr3R_5399229_5399863;chr3R_5399318_5399863 chr3R_5399255_5399863 chr3R_5399864_5399874;chr3R_5399076_5399228 19.23 25.00 15.38 6.67 15.38 30.77 25.00 15.00 15.62 NA 14.29 19.23 12.50 6.67 17.39 NA 20.00 18.18 5.88 17.24 NA NA NA 26.09 27.78 NA NA NA 25.00 NA 16.67 38.46 22.22 8.33 NA 28.57 17.65 NA 45.00 20.00 NA 34.09 18.75 NA 14.81 NA 25.00 31.58 9.38 27.27 26.32 31.25 23.08 NA 11.76 NA 15.38 33.33 K intron_retention jagn,EF_chr3R_1605142_1605741 chr3R + chr3R_1605239_1605521 chr3R_1605238_1605239;chr3R_1605521_1605522 chr3R_1605005_1605238;chr3R_1605522_1605894 0.00 0.00 0.94 3.16 0.00 0.00 0.00 1.87 0.00 1.82 0.00 0.32 0.00 1.55 0.46 0.00 0.00 0.00 0.00 0.99 1.69 3.70 0.00 0.00 0.00 0.00 3.42 3.03 3.39 0.00 2.96 1.80 1.27 0.75 0.00 3.25 0.00 0.00 1.18 1.46 0.00 0.94 0.00 0.00 0.00 1.18 0.00 1.13 0.85 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7203,LKR,I_chr2L_7795654_7795717 chr2L - chr2L_7792116_7792174 chr2L_7792115_7792116;chr2L_7792174_7792175 chr2L_7791939_7792115;chr2L_7792175_7793330 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG31120,I_chr3R_20743232_20743287 chr3R - chr3R_20743232_20743430 chr3R_20743232_20743287 chr3R_20743132_20743231;chr3R_20743431_20743491 5.00 NA NA 5.00 NA NA NA NA 5.00 NA NA 9.09 NA NA NA 10.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA 4.76 NA 0.00 NA NA NA 9.52 NA NA 9.09 NA NA NA NA NA NA NA NA 4.76 K alternative_acceptor RI_chrX_8468338_8469380,I_chrX_8468338_8477573,CG12065,CE_chrX_8469528_8477573 chrX + chrX_8468441_8469386;chrX_8468441_8469380 chrX_8468441_8469383 chrX_8468351_8468440;chrX_8469387_8469480 47.06 46.34 44.19 52.73 57.89 47.37 33.78 52.70 43.86 36.36 47.06 44.44 51.28 50.00 43.90 53.41 46.51 45.16 51.06 54.67 45.95 55.14 42.86 50.00 55.17 42.50 51.61 42.31 40.00 51.85 45.76 44.44 50.00 46.48 51.22 57.58 52.78 54.76 56.10 44.23 43.33 47.67 53.66 43.33 46.15 54.17 52.38 45.00 43.06 48.98 46.77 47.17 44.44 45.83 48.00 44.68 46.88 47.83 N alternative_acceptor CG40467,RI_chr3LHet_770101_770152,I_chr3LHet_771023_771113,RI_chr3LHet_771455_771626 chr3LHet - chr3LHet_787757_789080;chr3LHet_787974_789080 chr3LHet_722704_789080 chr3LHet_789081_789255;chr3LHet_722418_722703 0.00 NA NA 0.00 NA 100.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3087643_3087698 chr3L_3087642_3087643;chr3L_3087698_3087699 chr3L_3087506_3087642;chr3L_3087699_3087890 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 K intron_retention Gs1l,I_chr2L_4456517_4456723,I_chr2L_4458058_4458120 chr2L - chr2L_4456521_4456723 chr2L_4456520_4456521;chr2L_4456723_4456724 chr2L_4456386_4456520;chr2L_4456724_4456810 20.00 38.46 NA 38.10 NA NA 6.90 7.69 9.52 NA 5.88 15.38 0.00 NA 10.53 20.00 12.50 44.44 5.56 21.62 10.53 NA NA NA NA 28.57 72.73 NA 56.25 NA 6.67 NA 26.67 4.35 NA 70.59 NA NA 45.45 NA NA 11.76 NA NA 25.00 7.14 NA 30.77 28.00 NA NA NA NA NA 11.11 38.46 NA 40.00 K jcn_only_AA fbp,I_chr2L_19762832_19763529 chr2L - chr2L_19762815_19763425 chr2L_19762832_19763425 chr2L_19763426_19763497;chr2L_19762732_19762814 100.00 NA NA NA NA NA NA 100.00 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA 96.30 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 97.30 100.00 NA NA NA NA NA NA NA NA 100.00 K alternative_donor cul-2,RI_chr2L_21657668_21657832,noncoding_4226,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21657668_21657832;chr2L_21657742_21657832 chr2L_21657777_21657832 chr2L_21657833_21657932;chr2L_21657659_21657667 16.00 17.95 21.21 28.89 26.67 25.00 38.04 29.55 30.65 12.12 16.00 31.67 36.84 24.00 21.21 26.67 40.00 12.00 29.41 16.22 14.81 10.69 7.14 20.93 10.34 17.14 10.00 13.00 13.98 10.59 23.53 7.02 5.49 18.03 5.36 2.02 16.67 15.62 10.64 7.89 8.04 21.82 31.58 11.76 9.38 9.68 10.42 14.12 25.42 10.81 11.54 25.00 16.00 9.26 17.78 12.00 15.09 20.45 N multi_cassette CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525393_1529105 chr3L_1525393_1525641;chr3L_1525704_1526333;chr3L_1526399_1526659;chr3L_1526732_1527189;chr3L_1527382_1527438;chr3L_1527614_1527673;chr3L_1528077_1529105 chr3L_1525642_1525703;chr3L_1526334_1526398;chr3L_1526660_1526731;chr3L_1527190_1527381;chr3L_1527439_1527613;chr3L_1527674_1528076 chr3L_1525293_1525392;chr3L_1529106_1529206 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 35.29 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention S6k,I_chr3L_5800361_5803389,RI_chr3L_5801924_5803389 chr3L - chr3L_5799356_5799414 chr3L_5799355_5799356;chr3L_5799414_5799415 chr3L_5799107_5799355;chr3L_5799415_5799505 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.70 3.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rab9,I_chr2L_19433914_19433977,I_chr2L_19433918_19433974,I_chr2L_19433918_19433977 chr2L + chr2L_19433064_19434666 chr2L_19433063_19433064;chr2L_19434666_19434667 chr2L_19432591_19433063;chr2L_19434667_19434861 16.67 15.38 15.38 26.32 15.38 19.05 20.00 25.00 13.64 12.50 15.79 23.08 22.22 26.32 20.00 27.27 25.00 14.71 21.43 18.18 29.03 21.88 12.90 17.65 20.00 16.67 18.75 14.29 13.33 25.00 21.43 22.73 30.91 29.27 14.81 20.00 7.32 5.71 10.20 17.31 16.67 21.67 15.00 11.54 10.20 21.88 12.50 17.65 26.09 14.29 10.53 5.88 9.09 7.41 16.13 4.76 13.79 9.62 K alternative_donor Lerp chr3R - chr3R_22688433_22688824;chr3R_22688433_22688796;chr3R_22688433_22688772 chr3R_22688433_22688494 chr3R_22688359_22688432;chr3R_22688825_22688828 33.33 NA 40.00 28.57 NA NA 25.00 50.00 33.33 NA NA 50.00 NA 33.33 50.00 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 20.00 NA NA NA NA NA 20.00 NA NA NA NA NA NA NA 33.33 100.00 NA NA NA NA NA 28.57 NA NA NA K alternative_donor CG17002 chr2R + chr2R_2874439_2875142 chr2R_2874454_2875142 chr2R_2875143_2875164;chr2R_2874339_2874438 50.00 55.56 NA NA NA NA NA NA 69.23 NA 81.25 66.67 87.50 NA NA NA NA NA NA 75.00 92.31 20.59 42.86 50.00 NA 55.56 61.54 41.67 40.00 26.67 NA 44.44 20.00 55.56 NA NA 38.89 41.18 35.29 36.36 27.27 63.64 NA 50.00 22.22 33.33 54.55 NA 63.64 25.00 57.14 NA NA 30.77 NA 53.85 50.00 NA K alternative_donor CG4858,I_chr3L_20520381_20520577,EI_chr3L_20520642_20520692 chr3L + chr3L_20520377_20520692;chr3L_20520642_20520692 chr3L_20520381_20520692 chr3L_20520693_20520792;chr3L_20520281_20520376 95.31 97.37 97.50 94.59 96.88 92.31 95.31 90.70 92.54 96.00 96.88 92.06 96.00 90.32 97.06 95.24 96.15 92.31 96.88 98.63 96.15 87.88 96.30 94.64 94.59 94.59 94.03 92.73 97.75 97.83 97.56 96.36 96.23 94.74 96.77 93.55 94.03 92.11 93.94 92.21 97.14 95.00 94.12 96.61 97.06 93.98 96.23 97.01 94.00 90.91 95.24 92.86 97.67 96.00 96.88 94.92 96.23 96.43 K intron_retention CG14642,CG34305 chr3R - chr3R_67810_67896 chr3R_67809_67810;chr3R_67896_67897 chr3R_67700_67809;chr3R_67897_67958 70.00 NA NA NA NA NA NA 87.50 NA NA NA 61.54 NA NA 70.00 NA NA NA NA 86.67 NA 100.00 71.43 50.00 NA NA 69.23 NA NA NA 53.85 NA 88.89 77.78 NA NA 60.00 87.50 42.86 100.00 NA 72.73 NA NA 66.67 66.67 NA 88.89 NA 60.00 66.67 NA NA 73.33 NA 53.33 NA NA K alternative_last_exon S6k,I_chr3L_5800361_5803389,RI_chr3L_5801924_5803389 chr3L - chr3L_5793818_5798927 chr3L_5794726_5798927 chr3L_5791961_5793817 chr3L_5794657_5794725 chr3L_5798928_5799035 0.56 2.22 0.58 0.00 0.85 0.68 8.47 1.28 0.68 0.00 0.00 0.00 4.17 1.66 1.16 1.14 1.30 9.03 2.12 1.38 0.00 2.48 0.42 0.49 0.74 1.54 0.00 0.00 0.56 0.00 1.36 0.00 0.00 1.59 0.00 0.00 0.00 0.74 0.00 0.34 0.61 1.60 0.65 0.60 0.50 0.36 0.46 0.00 1.79 0.00 1.31 1.64 0.00 0.00 0.48 0.00 0.00 0.00 K alternative_last_exon I_chrX_5796578_5796722,CG4020,CG12236,noncoding_22111,CG3726 chrX + chrX_5804095_5806458 chrX_5804095_5804465 chrX_5806459_5811660 chrX_5804466_5806364 chrX_5803945_5804094 14.50 10.37 15.00 18.63 10.84 13.33 13.89 21.09 18.45 11.22 16.00 15.56 27.27 21.05 14.68 31.87 15.94 16.09 20.24 16.59 16.44 12.40 13.55 10.76 10.23 12.33 13.18 9.93 17.43 16.35 17.89 13.86 15.67 21.28 15.38 6.94 9.18 8.21 8.47 18.99 16.67 14.50 17.81 11.45 6.29 15.95 11.94 19.67 17.42 9.62 12.90 13.92 9.66 10.22 15.69 11.19 7.10 14.46 N intron_retention Uhg3,noncoding_4006,E_chr2L_20647810_20648188,snoRNA:Me28S-C2645a,R_chr2L_20648002_20648194,snoRNA:Me28S-C2645b chr2L + chr2L_20647789_20648188 chr2L_20647788_20647789;chr2L_20648188_20648189 chr2L_20647710_20647788;chr2L_20648189_20648248 4.17 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.17 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG1561 chrX - chrX_11476507_11476565 chrX_11476506_11476507;chrX_11476565_11476566 chrX_11476072_11476506;chrX_11476566_11477072 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA 53.85 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA K intron_retention CG30492,C_chr2R_3522706_3523025,RI_chr2R_3536203_3536977,I_chr2R_3543397_3543455 chr2R + chr2R_3536203_3537815 chr2R_3536202_3536203;chr2R_3537815_3537816 chr2R_3536103_3536202;chr2R_3537816_3538313 78.17 84.21 90.48 82.61 85.71 94.12 62.50 76.92 68.89 42.86 100.00 82.93 81.82 66.67 92.86 75.00 73.91 100.00 77.78 75.68 100.00 55.88 72.00 62.96 93.33 100.00 86.67 NA 66.67 65.00 91.67 69.57 67.57 78.57 65.00 75.00 62.50 70.59 68.75 85.11 80.95 83.72 93.33 69.70 84.21 76.00 67.86 82.50 77.42 90.91 66.67 69.23 80.00 91.30 86.96 85.00 82.35 75.41 K jcn_only_AA Cg25C,I_chr2L_5029811_5029873 chr2L + chr2L_5029811_5030136 chr2L_5029811_5029873 chr2L_5029711_5029810;chr2L_5030137_5030237 2.60 5.71 4.44 4.35 0.00 11.54 14.29 0.00 1.00 NA 1.59 2.80 6.85 7.50 0.00 3.08 3.33 5.00 4.17 1.75 1.23 16.67 1.56 3.08 NA 0.00 2.70 0.00 2.78 NA 6.06 NA 0.00 2.60 0.00 5.88 1.96 2.70 2.38 5.56 2.94 1.16 4.65 0.00 NA 1.92 NA 2.50 3.74 0.00 1.54 0.00 2.50 9.52 1.67 0.00 2.56 4.41 K jcn_only_AA egr,I_chr2R_5970832_5970930,I_chr2R_5970999_5971058 chr2R + chr2R_5970832_5970930;chr2R_5970832_5970908 chr2R_5970832_5970926 chr2R_5970767_5970831;chr2R_5970931_5970998 21.73 24.37 21.28 16.77 23.16 25.33 17.12 19.22 21.38 25.00 25.44 22.63 19.69 21.03 21.87 17.88 24.79 19.92 19.82 20.36 21.40 24.22 21.79 23.31 19.84 18.25 28.07 17.30 22.60 20.35 18.83 19.27 20.00 19.32 21.78 29.84 26.81 23.50 23.64 23.76 16.60 22.75 23.24 19.63 24.44 21.45 22.39 20.42 18.13 26.76 22.82 21.73 24.52 24.36 16.88 20.37 23.26 21.28 K intron_retention Papss chr3L + chr3L_19838529_19838634 chr3L_19838528_19838529;chr3L_19838634_19838635 chr3L_19838397_19838528;chr3L_19838635_19838730 95.09 91.67 88.89 94.74 NA NA 94.12 100.00 100.00 NA 100.00 92.86 88.89 NA 100.00 100.00 NA NA 88.89 92.00 NA 100.00 88.24 100.00 NA 100.00 100.00 NA 100.00 NA 90.00 NA 100.00 100.00 100.00 NA 90.00 NA 100.00 NA NA 95.45 NA NA NA 100.00 90.91 NA 100.00 NA 100.00 87.50 80.00 NA 92.31 90.00 91.67 90.91 K intron_retention CG9339,RE_chr2L_20903555_20916904,I_chr2L_20903560_20918638,I_chr2L_20922613_20922685 chr2L - chr2L_20917121_20918638 chr2L_20917120_20917121;chr2L_20918638_20918639 chr2L_20916905_20917120;chr2L_20918639_20918738 89.44 91.67 90.91 83.33 90.00 NA 87.50 85.19 81.48 NA 88.89 88.24 81.82 100.00 90.91 86.36 93.75 90.00 81.82 82.35 NA NA 80.00 91.67 NA 90.00 92.31 NA NA 84.62 93.33 NA 100.00 90.48 90.91 91.67 75.00 NA NA 78.57 NA 80.95 76.47 100.00 NA 77.78 NA 91.67 81.48 NA 100.00 90.00 NA 87.50 92.31 NA NA 87.50 K alternative_acceptor Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5006553_5008568;chr2R_5006553_5008282;chr2R_5006553_5008598 chr2R_5006553_5007804 chr2R_5006405_5006552;chr2R_5008599_5008637 46.77 54.55 47.62 67.50 36.36 36.36 28.79 36.59 38.55 51.16 30.00 72.92 32.43 50.00 41.86 48.00 68.97 46.43 38.46 40.20 32.26 70.59 51.28 62.50 53.19 68.42 50.00 45.95 45.00 45.65 41.94 45.10 47.06 48.33 42.86 71.19 62.71 58.33 63.33 45.74 45.61 47.30 29.41 61.36 59.09 47.46 45.45 32.35 37.14 49.12 46.77 50.00 51.16 58.54 35.42 46.30 39.29 31.08 K alternative_donor bif,I_chrX_11581793_11583233 chrX + chrX_11575148_11575750 chrX_11575201_11575750 chrX_11575751_11577495;chrX_11574877_11575147 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N jcn_only_AA CG17018 chr2L + chr2L_22365325_22365414 chr2L_22365325_22365376 chr2L_22365205_22365324;chr2L_22365415_22365474 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.95 100.00 100.00 100.00 N jcn_only_AD Not1,I_chr2R_5463624_5463682 chr2R - chr2R_5455592_5455673;chr2R_5455592_5456067 chr2R_5455592_5456522 chr2R_5455002_5455591;chr2R_5456523_5457661 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Sec61beta,I_chr2R_10506408_10506473 chr2R + chr2R_10506408_10506473 chr2R_10506408_10506463 chr2R_10506341_10506407;chr2R_10506474_10506539 100.00 99.20 100.00 100.00 97.62 98.89 98.70 100.00 99.46 100.00 100.00 100.00 100.00 100.00 100.00 98.77 98.77 100.00 100.00 99.56 98.78 100.00 100.00 100.00 98.86 100.00 100.00 100.00 98.86 100.00 98.85 100.00 100.00 100.00 98.88 100.00 99.46 99.45 100.00 98.64 100.00 99.51 100.00 99.23 100.00 99.45 100.00 100.00 99.48 100.00 99.32 100.00 99.55 99.30 100.00 99.28 99.11 99.43 K intron_retention RpL23A,I_chr3L_1667736_1667806 chr3L - chr3L_1668222_1668595 chr3L_1668221_1668222;chr3L_1668595_1668596 chr3L_1668110_1668221;chr3L_1668596_1668620 0.08 0.06 0.00 0.06 0.09 0.05 0.13 0.06 0.08 0.00 0.03 0.07 0.04 0.00 0.03 0.07 0.05 0.08 0.11 0.06 0.07 0.57 0.25 0.20 0.30 0.15 0.73 0.92 0.54 0.17 0.18 0.06 0.05 0.03 0.24 0.00 0.04 0.12 0.08 0.14 0.14 0.08 0.09 0.14 0.04 0.00 0.12 0.05 0.14 0.23 0.43 0.23 0.05 0.00 0.05 0.12 0.12 0.01 K jcn_only_AA CG18170,CG33230,ABCB7 chr3L + chr3L_1620555_1620918 chr3L_1620555_1620816 chr3L_1620428_1620554;chr3L_1620919_1621042 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 1.32 3.70 0.00 0.00 1.75 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 NA 2.17 0.00 0.00 2.41 0.00 0.00 0.00 1.16 0.00 2.04 0.00 0.00 0.00 0.00 1.79 3.33 0.00 0.00 4.17 0.00 1.92 0.00 K intron_retention gish,RI_chr3R_12118557_12122383 chr3R + chr3R_12118557_12121393 chr3R_12118556_12118557;chr3R_12121393_12121394 chr3R_12118496_12118556;chr3R_12121394_12121401 78.95 88.89 78.57 82.35 NA 88.89 90.00 82.35 79.31 NA NA 74.19 70.00 71.43 75.00 75.00 92.31 NA 85.71 78.95 NA NA 60.00 64.29 NA 80.00 88.89 NA NA NA 88.89 NA NA 75.00 87.50 NA NA 81.82 50.00 70.00 NA 76.00 90.91 87.50 NA 72.73 NA NA 78.95 NA 69.23 NA NA NA 77.78 NA NA 87.50 N multi_cassette Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4834881_4843022 chrX_4834881_4841639;chrX_4841887_4841951;chrX_4842231_4843022 chrX_4841640_4841886;chrX_4841952_4842230 chrX_4834455_4834880;chrX_4843023_4843701 100.00 100.00 100.00 100.00 100.00 100.00 100.00 77.42 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 73.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor sec23,I_chr3R_1474873_1475080,I_chr3R_1474899_1475080,I_chr3R_1474960_1475051,I_chr3R_1477727_1478102 chr3R + chr3R_1474960_1475080 chr3R_1474960_1475051 chr3R_1474924_1474959;chr3R_1475081_1475151 16.67 15.66 16.67 10.57 26.09 20.37 18.80 16.08 22.62 26.00 18.64 15.92 12.94 15.71 20.41 11.19 28.99 18.64 17.31 16.18 20.69 22.08 11.29 11.50 16.67 16.67 11.86 18.56 34.29 14.29 19.77 15.38 47.62 17.50 14.81 10.53 16.67 12.50 13.04 19.39 33.33 19.11 12.50 9.38 32.26 22.58 14.29 29.03 17.16 16.41 10.45 14.10 20.34 12.77 18.75 13.41 20.95 29.41 K alternative_donor CG18011 chr2R + chr2R_6030854_6030913 chr2R_6030858_6030913 chr2R_6030914_6031175;chr2R_6030698_6030853 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG8578 chrX + chrX_15738542_15739359 chrX_15738565_15739359 chrX_15739360_15739501;chrX_15738535_15738541 97.78 NA NA 95.00 NA NA 96.88 NA 97.78 NA NA 100.00 NA NA 100.00 95.56 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 97.30 NA 100.00 NA NA NA NA 94.12 NA NA NA NA NA NA NA NA NA K intron_retention CG1840 chrX + chrX_11782690_11782748 chrX_11782689_11782690;chrX_11782748_11782749 chrX_11782621_11782689;chrX_11782749_11782814 0.00 0.00 0.00 0.00 0.00 0.00 4.26 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.00 3.12 0.00 0.00 0.00 2.13 4.55 NA 2.56 1.79 0.00 2.00 4.44 7.14 0.00 0.00 0.00 0.00 6.67 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette drpr,I_chr3L_1720385_1723579 chr3L - chr3L_1716557_1716796 chr3L_1716557_1716674;chr3L_1716708_1716796 chr3L_1716675_1716707 chr3L_1715710_1716556;chr3L_1716797_1716943 0.39 0.33 0.35 1.66 0.00 0.36 0.24 0.42 0.26 0.88 2.59 0.27 0.90 0.35 0.26 0.28 0.35 0.32 0.27 0.48 0.85 0.71 0.33 0.00 0.65 0.30 0.81 0.85 1.52 0.39 0.26 0.00 0.59 0.42 0.00 0.62 0.70 0.53 0.62 0.43 1.03 0.44 0.39 0.36 0.74 0.57 0.68 0.29 0.17 0.29 0.00 0.00 0.51 0.46 0.26 0.44 0.00 0.31 K intron_retention CG5903 chr3R - chr3R_11972082_11972144 chr3R_11972081_11972082;chr3R_11972144_11972145 chr3R_11971500_11972081;chr3R_11972145_11972451 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.27 0.52 1.33 0.78 1.20 2.80 0.00 0.59 0.00 0.29 0.00 0.00 0.29 0.89 0.28 0.00 0.29 0.68 0.58 0.00 0.36 0.25 0.28 0.68 0.00 0.00 0.73 0.93 0.58 0.00 0.24 0.00 0.63 0.42 0.54 K intron_retention G-salpha60A chr2R + chr2R_19833601_19833659 chr2R_19833600_19833601;chr2R_19833659_19833660 chr2R_19833421_19833600;chr2R_19833660_19833784 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.88 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Lis-1 chr2R + chr2R_12070624_12070690 chr2R_12070623_12070624;chr2R_12070690_12070691 chr2R_12070488_12070623;chr2R_12070691_12071042 3.97 3.31 2.90 6.32 3.23 0.00 6.29 2.00 2.58 5.68 3.33 3.23 2.99 3.45 1.41 3.77 1.96 3.47 3.10 2.84 4.00 31.63 6.29 3.97 7.50 7.63 6.13 4.88 8.33 4.24 6.88 3.00 5.43 2.14 4.59 9.17 5.85 5.43 5.30 4.15 5.61 2.52 2.86 2.67 4.13 3.03 3.01 5.30 2.43 8.77 7.36 5.04 0.00 4.27 2.41 5.15 0.93 0.00 K multi_cassette mthl10 chr3L - chr3L_333641_334974 chr3L_333641_333941;chr3L_334120_334237;chr3L_334395_334974 chr3L_333942_334119;chr3L_334238_334394 chr3L_333522_333640;chr3L_334975_335169 55.00 NA NA 8.33 NA NA NA 40.00 60.00 NA NA 80.00 20.00 60.00 75.00 75.00 NA NA NA 44.44 NA NA 33.33 NA NA 33.33 75.00 NA 10.00 NA 100.00 NA 25.00 42.86 75.00 NA 60.00 66.67 42.86 75.00 33.33 50.00 NA 71.43 NA NA NA 75.00 44.44 66.67 50.00 NA NA 80.00 NA NA 50.00 NA K jcn_only_AA CG5793,I_chr3R_16953555_16953842 chr3R + chr3R_16953555_16953842 chr3R_16953555_16953676 chr3R_16953466_16953554;chr3R_16953843_16953939 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA NA NA NA 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 K alternative_acceptor Art4 chr3R - chr3R_5809714_5809778 chr3R_5809721_5809778 chr3R_5809779_5809847;chr3R_5809653_5809713 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 95.65 100.00 100.00 96.67 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor btz,I_chr3R_23526114_23526320 chr3R + chr3R_23526114_23526320 chr3R_23526248_23526320 chr3R_23526321_23526420;chr3R_23526112_23526113 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 K intron_retention Men,I_chr3R_8540855_8541101 chr3R - chr3R_8540855_8545124 chr3R_8540854_8540855;chr3R_8545124_8545125 chr3R_8540755_8540854;chr3R_8545125_8545730 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Sap47 chr3R + chr3R_11762063_11777323 chr3R_11762063_11770670;chr3R_11770719_11777323 chr3R_11770671_11770718 chr3R_11761963_11762062;chr3R_11777324_11777563 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA K intron_retention Ard1,noncoding_11800 chr3L + chr3L_9965498_9965980 chr3L_9965497_9965498;chr3L_9965980_9965981 chr3L_9965419_9965497;chr3L_9965981_9966101 11.31 NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.33 K multi_cassette CG40263,F_chr2RHet_1265687_1293040,F_chr2RHet_1298459_1298703,F_chr2RHet_1298459_1311408,F_chr2RHet_1298885_1299622,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1286572_1324445 chr2RHet_1286572_1293055;chr2RHet_1293175_1293235;chr2RHet_1293394_1324445 chr2RHet_1293056_1293174;chr2RHet_1293236_1293393 chr2RHet_1286565_1286571;chr2RHet_1324446_1324530 77.78 80.00 84.21 88.89 64.29 77.78 76.19 88.89 89.19 75.00 NA 92.59 80.00 77.27 81.82 82.76 76.19 92.31 88.57 72.09 100.00 33.33 69.23 76.92 66.67 70.00 63.64 NA 75.00 87.50 76.67 71.43 80.00 85.00 71.43 80.00 55.56 90.00 69.23 71.43 50.00 96.77 75.00 81.25 44.44 75.00 78.57 87.50 80.00 60.00 82.61 70.00 85.71 83.33 88.89 64.29 66.67 80.00 K jcn_only_AD Actn chrX - chrX_1920943_1921316 chrX_1920943_1921216 chrX_1919808_1920942 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6689,RI_chr3R_7044164_7044221 chr3R - chr3R_7044164_7044234 chr3R_7044163_7044164;chr3R_7044234_7044235 chr3R_7044064_7044163;chr3R_7044235_7044321 0.00 0.00 10.00 0.00 4.55 0.00 0.00 4.55 9.76 NA 0.00 0.00 0.00 0.00 0.00 14.29 6.67 NA 13.64 8.33 NA 0.00 0.00 0.00 0.00 5.00 6.90 0.00 0.00 0.00 0.00 0.00 0.00 11.11 0.00 0.00 3.70 0.00 0.00 4.44 0.00 0.00 9.52 0.00 8.00 0.00 0.00 11.76 5.26 0.00 0.00 NA 0.00 0.00 0.00 0.00 1.67 0.00 K alternative_last_exon CG8290 chr2R + chr2R_7860546_7862860 chr2R_7860546_7861062 chr2R_7862861_7865261 chr2R_7861063_7862013 chr2R_7860092_7860545 37.21 35.71 39.13 39.02 41.38 40.54 33.33 32.43 36.00 38.71 34.48 38.96 34.21 34.09 44.00 29.33 35.14 36.96 34.69 37.76 35.29 43.24 47.50 37.50 43.33 43.18 40.00 32.50 58.82 34.09 35.56 38.10 39.68 35.44 37.21 38.46 42.00 44.44 46.15 40.74 36.17 37.93 31.58 40.00 42.22 36.92 33.33 38.46 37.08 38.00 36.36 36.36 34.62 35.29 37.04 39.53 32.43 36.99 K jcn_only_AD tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5960163;chr3R_5959310_5960101;chr3R_5959310_5960041;chr3R_5959310_5959789;chr3R_5959310_5960049;chr3R_5959310_5960182;chr3R_5959310_5960026;chr3R_5959310_5959679 chr3R_5959310_5960158 chr3R_5958937_5959309;chr3R_5960183_5960224 1.19 0.00 3.12 1.19 4.35 5.71 0.00 1.85 0.83 0.00 4.17 1.30 1.72 5.56 0.00 2.75 2.17 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 4.55 0.00 4.17 6.45 3.03 1.85 NA 0.00 2.11 0.00 0.00 NA NA NA 6.00 4.55 1.10 1.82 2.00 5.00 2.94 NA 1.92 8.60 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 N jcn_only_AA CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261460_263113;chr4_261460_263086 chr4_261460_261555 chr4_261360_261459;chr4_263114_263305 0.00 NA NA 52.38 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention CG6695 chr3R + chr3R_20484327_20484382 chr3R_20484326_20484327;chr3R_20484382_20484383 chr3R_20484221_20484326;chr3R_20484383_20485086 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 3.23 13.58 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 1.19 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 1.06 0.00 0.79 0.00 0.00 0.00 0.00 0.00 1.12 0.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2813977;chr2R_2814097_2814174;chr2R_2814327_2814894;chr2R_2815654_2816013;chr2R_2816342_2816577;chr2R_2816779_2817327;chr2R_2817604_2817753 chr2R_2813978_2814096;chr2R_2814175_2814326;chr2R_2814895_2815653;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817328_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor Rbf chrX - chrX_693047_693348 chrX_693047_693123 chrX_692311_693046;chrX_693349_693680 3.23 0.00 0.00 6.25 4.00 0.00 5.26 2.70 0.00 11.76 NA 4.44 5.56 0.00 3.85 3.85 0.00 10.53 4.55 4.76 NA 9.30 3.17 4.35 3.57 0.00 2.08 NA 0.00 0.00 5.56 4.00 0.00 3.57 0.00 3.23 1.47 3.12 0.00 4.76 16.67 2.13 0.00 3.85 5.56 7.41 0.00 14.29 1.85 4.00 5.77 3.85 0.00 0.00 0.00 3.23 0.00 0.00 K alternative_donor I_chr3R_16141663_16144698,CG5077,I_chr3R_16147605_16147670 chr3R + chr3R_16147603_16147670 chr3R_16147605_16147670 chr3R_16147671_16147746;chr3R_16147505_16147602 0.52 0.00 0.31 0.89 0.44 0.66 0.25 1.04 0.67 0.68 0.00 0.17 1.72 0.00 0.28 0.58 0.00 0.26 0.75 0.72 0.78 1.11 0.45 0.51 0.78 0.53 2.03 3.57 1.14 1.04 0.24 0.38 0.79 0.21 0.58 0.73 0.33 0.00 0.23 0.80 0.45 0.80 0.00 0.29 0.30 0.41 0.00 0.18 0.67 0.00 0.94 1.29 0.65 0.33 0.70 0.29 0.63 0.52 K alternative_donor Magi,I_chr2R_17020420_17029043,I_chr2R_17026738_17027105,I_chr2R_17026738_17029359 chr2R - chr2R_17026738_17029043 chr2R_17026738_17027105 chr2R_17026638_17026737;chr2R_17029044_17029143 0.00 NA 0.00 0.00 NA 0.00 4.76 3.12 4.35 NA NA 4.76 0.00 0.00 0.00 3.57 0.00 NA 0.00 3.85 NA 0.00 0.00 NA NA 0.00 6.67 50.00 10.00 NA 0.00 0.00 NA 3.45 NA 6.25 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 9.09 3.57 NA 0.00 NA NA NA 0.00 NA NA NA K intron_retention Pkn,I_chr2R_5171635_5172166 chr2R - chr2R_5171635_5172463 chr2R_5171634_5171635;chr2R_5172463_5172464 chr2R_5171535_5171634;chr2R_5172464_5172595 23.08 NA NA 41.18 NA NA 17.39 26.67 23.08 NA NA 36.36 20.00 NA NA 15.38 NA NA 23.08 21.43 NA 70.00 25.00 NA NA NA 20.00 NA NA NA 14.29 NA NA 22.73 NA NA NA NA NA 46.67 NA 24.00 36.36 NA NA NA NA NA 30.00 NA 22.22 NA NA NA 22.22 NA NA NA K alternative_last_exon CG11638,noncoding_21270 chrX - chrX_910742_920546 chrX_915628_920546 chrX_910554_910741 chrX_915079_915627 chrX_920547_920704 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG8177,I_chr3L_9773534_9773635,I_chr3L_9774319_9774602 chr3L + chr3L_9774319_9775708 chr3L_9774319_9774802 chr3L_9774219_9774318 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10344 chr2R - chr2R_18313760_18313817 chr2R_18313759_18313760;chr2R_18313817_18313818 chr2R_18313307_18313759;chr2R_18313818_18314131 90.00 100.00 87.50 100.00 NA NA 80.00 84.62 83.33 NA NA 92.86 NA NA 88.89 100.00 NA 63.64 NA 90.91 NA 90.00 88.89 100.00 NA NA NA NA NA NA NA NA 100.00 100.00 NA NA 88.89 NA 90.00 83.33 88.89 100.00 NA 87.50 NA 75.00 NA NA 90.00 NA 100.00 NA 90.91 NA NA 75.00 100.00 80.00 N intron_retention RhoGAP18B chrX - chrX_19047314_19047377 chrX_19047313_19047314;chrX_19047377_19047378 chrX_19047061_19047313;chrX_19047378_19047520 100.00 100.00 100.00 100.00 100.00 100.00 93.02 93.88 95.16 100.00 100.00 95.36 100.00 100.00 100.00 93.80 100.00 85.88 92.45 94.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.53 95.67 100.00 100.00 100.00 100.00 100.00 100.00 94.57 100.00 95.19 100.00 100.00 91.41 97.06 100.00 95.36 95.54 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.80 K intron_retention Mad chr2L - chr2L_3148738_3148803 chr2L_3148737_3148738;chr2L_3148803_3148804 chr2L_3148047_3148737;chr2L_3148804_3149279 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ca,CG7802 chr3R + chr3R_25634129_25634190 chr3R_25634128_25634129;chr3R_25634190_25634191 chr3R_25633527_25634128;chr3R_25634191_25634727 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA K alternative_donor mbf1,RI_chr3L_16567888_16567952,RI_chr3L_16568077_16568816 chr3L + chr3L_16567888_16567952;chr3L_16567770_16567952 chr3L_16567853_16567952 chr3L_16567953_16568052;chr3L_16567701_16567769 96.51 96.30 98.41 86.96 97.22 95.35 91.87 94.57 97.18 100.00 98.33 95.51 94.34 96.30 92.19 96.55 95.00 98.11 98.18 95.87 94.83 95.31 98.65 97.96 91.89 93.48 88.24 92.31 90.48 97.62 97.20 95.16 95.16 93.48 96.97 97.56 97.20 95.31 97.30 96.55 92.50 95.87 96.00 97.67 96.61 98.28 98.11 94.87 95.54 98.61 97.62 98.25 96.08 100.00 96.97 96.51 97.14 97.37 K intron_retention CG1021,I_chr3R_2217711_2231099,I_chr3R_2217711_2231390,RI_chr3R_2217711_2231463,I_chr3R_2217742_2218601,I_chr3R_2217742_2219453,I_chr3R_2218465_2231390,RI_chr3R_2218465_2231463,I_chr3R_2218682_2231463,I_chr3R_2219634_2231390,RI_chr3R_2231206_2231270,I_chr3R_2231271_2231390,I_chr3R_2231285_2231463,I_chr3R_2231383_2231463 chr3R - chr3R_2217711_2218601 chr3R_2217710_2217711;chr3R_2218601_2218602 chr3R_2217642_2217710;chr3R_2218602_2218681 33.33 18.75 18.75 45.16 NA 30.77 60.00 30.43 36.11 40.00 27.78 30.30 39.13 36.36 29.63 36.36 38.46 23.53 33.33 34.88 14.29 53.70 24.32 21.95 33.33 33.33 36.36 34.62 59.09 44.44 50.00 NA 21.43 30.77 33.33 33.33 42.86 18.52 23.81 37.74 50.00 33.33 26.67 29.03 52.17 NA 22.22 55.56 33.33 24.44 22.58 16.67 18.92 20.00 27.27 29.41 17.65 36.36 K intron_retention CG5273 chrX + chrX_653719_653808 chrX_653718_653719;chrX_653808_653809 chrX_653471_653718;chrX_653809_654561 50.00 45.45 36.84 72.73 26.67 60.00 38.10 52.17 32.35 NA NA 55.00 NA 57.14 50.00 50.00 NA 46.15 54.55 67.86 NA 66.67 45.83 45.00 47.06 54.55 80.00 NA 70.00 NA 47.62 NA 53.85 50.00 60.00 75.00 42.86 33.33 19.05 41.67 80.00 31.03 NA NA NA 59.09 73.33 NA 54.84 66.67 43.48 NA NA 38.10 47.62 63.64 46.15 NA K intron_retention CG5854,RI_chr3R_19760655_19760703 chr3R + chr3R_19759783_19759892 chr3R_19759782_19759783;chr3R_19759892_19759893 chr3R_19759718_19759782;chr3R_19759893_19760066 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.75 0.00 2.30 0.74 0.48 1.64 0.00 0.00 2.47 2.26 0.00 1.41 0.00 1.77 0.00 0.00 1.54 0.87 0.00 1.53 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 1.31 0.00 0.00 1.01 0.00 0.00 0.00 0.47 0.94 K intron_retention MAPk-Ak2,RI_chrX_5655618_5656137,I_chrX_5656715_5657974 chrX - chrX_5655618_5656133 chrX_5655617_5655618;chrX_5656133_5656134 chrX_5655518_5655617;chrX_5656134_5656677 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rph,I_chrX_10644396_10644958,I_chrX_10646283_10647245,I_chrX_10647710_10648325,RI_chrX_10649048_10651427 chrX - chrX_10645816_10645935 chrX_10645815_10645816;chrX_10645935_10645936 chrX_10644959_10645815;chrX_10645936_10646059 18.07 NA NA NA NA NA NA 20.00 NA NA NA 14.29 NA NA NA NA NA NA NA 17.39 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 18.75 NA NA NA NA NA NA NA NA NA K intron_retention CG11448,I_chrX_1288748_1289115,RI_chrX_1289405_1289590 chrX + chrX_1289405_1289590 chrX_1289404_1289405;chrX_1289590_1289591 chrX_1289305_1289404;chrX_1289591_1289690 100.00 100.00 100.00 100.00 NA NA 100.00 95.45 100.00 100.00 NA 95.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 88.89 91.67 100.00 95.24 90.91 NA 94.12 100.00 100.00 95.00 100.00 95.24 96.97 100.00 95.24 100.00 94.44 100.00 94.74 94.59 100.00 91.30 NA 94.44 94.44 100.00 100.00 96.88 96.30 100.00 100.00 92.86 91.67 100.00 100.00 93.33 100.00 88.00 K alternative_donor CG1599,I_chr2R_5729744_5729805 chr2R - chr2R_5729673_5729805 chr2R_5729673_5729801 chr2R_5729644_5729672;chr2R_5729806_5729905 1.15 1.25 1.37 2.38 0.00 0.00 1.57 0.73 0.79 0.00 2.04 0.75 0.00 1.47 4.00 0.81 0.00 1.59 1.22 1.42 1.75 1.41 1.02 1.02 0.00 1.15 2.50 3.33 0.00 0.00 1.06 0.00 0.00 2.61 0.00 0.00 1.41 1.47 1.05 1.10 0.00 0.70 1.43 1.67 2.78 0.00 0.00 3.85 1.43 1.45 0.97 1.96 0.00 0.00 1.27 1.18 1.22 3.57 K alternative_acceptor Ndae1,I_chr2L_7231127_7234203,I_chr2L_7231184_7234525,I_chr2L_7231981_7234526,CREI_chr2L_7232646_7232704,I_chr2L_7234342_7234526 chr2L - chr2L_7231127_7234526 chr2L_7231184_7234526 chr2L_7234527_7234625;chr2L_7231095_7231126 100.00 100.00 100.00 100.00 94.44 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 94.44 96.55 96.88 96.00 98.18 100.00 96.43 100.00 95.65 100.00 100.00 98.31 100.00 100.00 100.00 100.00 92.31 100.00 100.00 96.55 100.00 K intron_retention dia chr2L + chr2L_20766041_20766117 chr2L_20766040_20766041;chr2L_20766117_20766118 chr2L_20765510_20766040;chr2L_20766118_20767520 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ect4,I_chr3L_8075556_8086158,I_chr3L_8089973_8090123,I_chr3L_8089977_8091445,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8089973_8090070 chr3L_8089972_8089973;chr3L_8090070_8090071 chr3L_8089959_8089972;chr3L_8090071_8090087 86.41 85.71 81.82 95.35 88.89 84.62 79.17 84.78 82.46 NA 77.78 97.06 84.62 87.50 85.71 85.11 82.35 77.78 85.19 87.18 90.00 NA 85.71 NA NA 90.00 88.89 NA 100.00 88.89 64.29 NA NA 84.44 76.47 NA 77.78 100.00 NA 93.75 NA 87.10 94.74 100.00 NA 90.91 NA 85.00 87.18 NA 88.89 76.92 NA NA 92.31 NA NA 90.00 K intron_retention arg,RI_chrX_421417_421591 chrX + chrX_404147_404207 chrX_404146_404147;chrX_404207_404208 chrX_403943_404146;chrX_404208_404394 21.89 9.09 NA 25.00 NA 0.00 23.08 15.00 20.69 NA NA 26.92 10.00 NA 35.71 11.11 12.50 6.67 23.53 21.05 NA 18.75 15.00 27.78 NA 4.76 26.09 NA NA 35.71 38.10 NA 10.53 23.81 NA 17.65 9.52 23.53 17.39 25.00 NA 22.73 NA 26.32 NA 7.69 46.15 NA 15.38 37.50 NA NA 13.33 NA 23.53 33.33 30.56 NA K jcn_only_AA CG2926,I_chr3R_1410401_1410501,I_chr3R_1410558_1410893,I_chr3R_1410841_1410893 chr3R - chr3R_1410401_1410893 chr3R_1410558_1410893 chr3R_1410894_1410993;chr3R_1410301_1410400 1.75 2.78 0.00 7.58 2.17 0.00 1.75 0.00 0.00 14.29 2.94 1.25 7.69 0.00 2.08 0.00 0.00 0.00 0.00 0.00 2.56 3.96 0.00 3.03 0.00 0.00 2.70 7.14 0.00 0.00 0.00 0.00 3.80 0.00 1.75 3.57 2.82 0.00 2.17 1.05 5.00 3.75 0.00 1.49 3.12 0.00 NA 5.56 2.97 NA 3.70 7.89 0.00 NA 3.70 0.00 NA 2.22 K intron_retention ran,I_chrX_11040449_11042518,I_chrX_11040462_11041873,I_chrX_11040462_11042000 chrX - chrX_11040462_11042518 chrX_11040461_11040462;chrX_11042518_11042519 chrX_11040362_11040461;chrX_11042519_11042618 0.00 0.27 0.00 0.23 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.24 0.10 0.00 0.00 0.26 0.14 0.15 0.00 0.00 0.33 0.00 0.00 0.21 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.11 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.18 K intron_retention CG3632,RI_chrX_16195880_16196242 chrX + chrX_16193244_16193308 chrX_16193243_16193244;chrX_16193308_16193309 chrX_16193053_16193243;chrX_16193309_16193504 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 1.71 0.00 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG2924,I_chrX_2163288_2163676,I_chrX_2163738_2163863,I_chrX_2163738_2164440,I_chrX_2163738_2164560,I_chrX_2168373_2168893 chrX - chrX_2163738_2164440;chrX_2163738_2164731 chrX_2163738_2164670 chrX_2163677_2163737;chrX_2164732_2164736 10.00 NA NA 30.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG15514 chr3R - chr3R_25686358_25686428 chr3R_25686357_25686358;chr3R_25686428_25686429 chr3R_25685755_25686357;chr3R_25686429_25687281 2.00 3.92 0.00 4.55 0.00 0.00 3.90 7.27 2.70 0.00 2.44 5.00 0.00 0.00 2.17 2.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.96 14.81 6.38 6.25 0.00 9.09 0.00 5.36 0.00 0.00 5.66 2.13 3.33 4.35 0.00 2.70 0.00 5.00 0.00 3.57 0.00 2.78 0.00 3.85 3.57 2.94 0.00 0.00 0.00 3.03 1.64 3.39 K jcn_only_AD CG17082,I_chr2R_632143_635290,R_chr2R_642176_644740,I_chr2R_644094_644145,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_631984_636726;chr2R_632083_636726;chr2R_631971_636726;chr2R_632143_636726 chr2R_631907_636726 chr2R_636727_636891;chr2R_631902_631906 32.26 NA NA 21.28 NA NA 28.95 25.71 41.46 NA NA 38.10 NA 50.00 NA 30.56 47.62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 32.26 NA NA NA NA NA NA NA 34.38 NA NA NA NA NA NA 31.03 NA NA NA NA NA NA NA NA NA K alternative_last_exon Fit1,noncoding_10535,Ack chr3L + chr3L_4104119_4110497 chr3L_4104119_4104202 chr3L_4110498_4111639 chr3L_4104203_4107121 chr3L_4103647_4104118 78.26 88.71 80.82 73.91 90.74 90.32 80.17 69.70 81.05 80.49 73.81 64.89 61.40 80.60 75.64 91.01 85.96 81.03 75.36 77.70 67.39 85.54 78.26 83.78 83.33 76.47 86.84 90.38 35.94 63.86 81.94 73.33 69.16 81.31 90.57 76.47 83.33 86.21 85.88 60.00 67.09 88.00 88.68 60.61 66.67 68.75 76.12 43.31 77.54 90.16 81.72 76.00 61.97 75.00 77.42 87.27 82.22 66.96 K jcn_only_AD Atet,chr2L_4334987_4335394.0,chr2L_4335788_4336447.0 chr2L + chr2L_4334440_4336449;chr2L_4334111_4336449;chr2L_4334031_4336449 chr2L_4334105_4336449 chr2L_4336450_4336957;chr2L_4333936_4334030 36.75 NA NA 29.17 NA NA 15.00 29.03 30.30 NA NA 37.93 25.00 NA NA 39.13 NA NA 26.09 20.00 NA 59.32 40.91 NA NA NA NA NA 38.46 27.59 NA NA 48.15 40.00 37.50 46.15 NA NA NA 20.83 46.43 52.38 NA 20.00 NA 47.62 NA 36.00 44.00 NA 35.00 NA NA NA NA NA NA 30.23 K cassette KrT95D,I_chr3R_19825840_19825904 chr3R - chr3R_19826503_19829137 chr3R_19826503_19828143;chr3R_19828270_19829137 chr3R_19828144_19828269 chr3R_19825902_19826502;chr3R_19829138_19829486 93.43 94.90 95.51 96.35 88.31 95.56 96.35 99.22 93.43 81.48 90.28 94.41 85.48 96.74 93.48 98.37 98.46 96.05 97.78 94.12 95.24 87.93 90.45 92.31 90.32 95.45 88.97 85.29 86.19 88.83 99.11 96.69 93.98 94.48 92.68 67.15 86.84 90.82 90.77 91.19 95.98 93.48 95.06 94.63 89.47 93.30 95.83 92.09 97.22 89.47 90.07 93.90 84.75 90.67 94.39 92.86 91.03 92.31 K alternative_donor CG3036 chr2L + chr2L_4902906_4902973 chr2L_4902910_4902973 chr2L_4902974_4903889;chr2L_4902664_4902905 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG42348,I_chr3L_20147245_20147306,I_chr3L_20149990_20151579 chr3L - chr3L_20147245_20147306 chr3L_20147245_20147303 chr3L_20147177_20147244;chr3L_20147307_20147366 99.38 100.00 98.44 99.53 100.00 98.12 99.40 99.55 98.81 99.35 97.76 99.06 98.94 100.00 99.36 100.00 99.10 99.33 100.00 99.48 99.21 99.63 98.94 99.46 100.00 100.00 98.20 100.00 99.57 100.00 98.24 99.64 99.72 99.26 98.39 100.00 99.65 98.93 99.67 98.95 99.71 99.38 98.18 99.09 99.08 98.67 98.68 99.38 99.64 99.42 98.94 100.00 100.00 99.32 99.48 100.00 98.83 99.32 K alternative_donor bowl,RI_chr2L_3772695_3773616 chr2L + chr2L_3771874_3772460;chr2L_3771755_3772460 chr2L_3771785_3772460 chr2L_3772461_3772694;chr2L_3771707_3771754 66.67 NA 80.00 66.67 NA NA 63.64 66.67 66.67 NA NA NA NA 71.43 NA 71.43 NA NA NA 63.64 NA 62.50 75.00 NA 60.00 NA NA 42.86 NA 71.43 NA NA 83.33 63.64 NA NA 50.00 NA NA 60.00 NA 75.00 NA NA NA NA NA NA 72.73 NA NA NA NA NA 75.00 NA NA 71.43 K intron_retention CG12206,I_chrX_3367405_3367523 chrX - chrX_3360666_3365906 chrX_3360665_3360666;chrX_3365906_3365907 chrX_3360432_3360665;chrX_3365907_3367404 4.76 0.00 11.11 5.88 NA NA 21.43 8.00 7.14 NA NA 15.38 NA NA NA 12.50 NA NA 25.00 16.67 NA 0.00 9.09 0.00 12.50 16.67 4.35 8.00 6.25 3.23 NA 0.00 0.00 12.50 0.00 6.67 0.00 NA 0.00 0.00 4.76 4.76 14.29 3.85 13.33 4.55 0.00 4.76 6.25 1.64 0.00 10.53 0.00 NA 7.69 0.00 4.65 2.17 N alternative_donor noncoding_4622,CE_chr2R_2237053_2237111 chr2R - chr2R_2237036_2237093;chr2R_2237036_2237086 chr2R_2237036_2237090 chr2R_2236997_2237035;chr2R_2237094_2237159 59.55 100.00 51.43 NA 50.00 100.00 63.92 61.11 58.23 52.94 100.00 51.02 58.06 45.00 100.00 100.00 59.09 45.45 65.38 53.33 55.56 54.69 100.00 65.00 NA 100.00 NA 63.16 61.22 72.09 55.56 61.11 61.22 60.00 50.00 55.56 54.76 44.44 45.16 66.67 57.14 58.70 58.62 45.71 43.75 50.00 100.00 58.97 71.43 100.00 64.29 100.00 70.00 100.00 65.38 100.00 58.33 52.00 K jcn_only_AA Rpn1 chr3L + chr3L_19910214_19910288 chr3L_19910214_19910282 chr3L_19908156_19910213;chr3L_19910289_19911265 100.00 100.00 100.00 100.00 99.09 99.09 99.32 100.00 99.63 100.00 100.00 99.47 100.00 100.00 98.61 100.00 100.00 100.00 98.63 99.17 100.00 100.00 98.11 99.14 100.00 100.00 100.00 100.00 100.00 100.00 99.29 100.00 100.00 99.44 100.00 100.00 99.19 100.00 100.00 100.00 100.00 99.57 99.12 99.11 99.34 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 98.17 99.38 K alternative_donor trbd,hyd chr3R - chr3R_5545344_5545441 chr3R_5545344_5545435 chr3R_5545199_5545343;chr3R_5545442_5548942 0.00 0.00 0.00 0.81 0.00 0.00 1.00 0.90 1.30 3.12 1.67 0.00 0.00 1.41 1.56 0.00 0.00 0.00 1.10 0.73 1.85 2.00 0.78 0.00 0.00 0.00 1.32 0.00 0.00 0.00 1.47 0.00 0.00 1.05 0.00 1.92 0.00 2.38 3.85 0.00 0.00 0.72 1.72 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 1.35 0.00 0.00 0.00 2.70 0.00 0.00 K alternative_donor g,I_chrX_13628772_13629563 chrX - chrX_13622851_13622915 chrX_13622851_13622912 chrX_13622718_13622850;chrX_13622916_13623056 96.00 78.95 96.00 95.24 95.00 96.30 95.65 95.56 95.59 100.00 96.15 94.55 100.00 95.83 87.18 96.08 95.24 96.00 96.30 91.46 100.00 94.44 96.97 100.00 94.74 91.30 92.11 94.12 96.15 93.75 92.31 96.67 100.00 93.02 96.67 94.74 87.80 100.00 97.62 96.83 96.55 93.33 95.83 96.55 100.00 97.56 97.37 97.67 97.96 97.22 96.88 92.31 95.83 96.43 100.00 95.83 90.91 100.00 K intron_retention CkIIbeta,I_chrX_11686847_11687475,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11686720_11687475 chrX_11686719_11686720;chrX_11687475_11687476 chrX_11686701_11686719;chrX_11687476_11687551 2.86 4.55 8.00 8.70 0.00 0.00 2.78 8.06 4.90 0.00 3.45 3.57 2.86 6.25 4.76 4.92 6.90 3.85 2.38 4.29 0.00 0.00 2.22 0.00 0.00 0.00 6.25 0.00 0.00 0.00 6.45 NA 5.88 3.28 12.50 0.00 0.00 0.00 7.69 2.86 11.11 4.48 3.03 0.00 NA 0.00 3.33 NA 3.85 NA 4.65 0.00 0.00 0.00 6.06 0.00 0.00 0.00 K alternative_acceptor CG14785,CG14786,ns3 chrX - chrX_1349727_1349782 chrX_1349729_1349782 chrX_1349783_1349982;chrX_1349248_1349726 94.44 NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG11125 chr2R + chr2R_3336125_3336287 chr2R_3336124_3336125;chr2R_3336287_3336288 chr2R_3335817_3336124;chr2R_3336288_3336446 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 NA 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL5,I_chr2L_22427822_22428348,psnoRNA:RpL5-a,F_chr2L_22428392_22428525,I_chr2L_22428750_22428846 chr2L - chr2L_22427822_22428348 chr2L_22427821_22427822;chr2L_22428348_22428349 chr2L_22427722_22427821;chr2L_22428349_22428391 80.10 NA NA 78.95 NA 87.50 90.00 75.00 72.22 NA NA 81.82 NA 55.56 87.50 70.00 NA NA NA 81.25 NA NA NA NA NA NA NA 29.17 NA NA NA NA NA 76.92 NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA 85.00 NA NA NA NA NA 81.82 NA NA 68.75 N cassette CG14995,I_chr3L_4095875_4097205,I_chr3L_4096047_4096903 chr3L - chr3L_4095875_4097205;chr3L_4095875_4097506 chr3L_4095875_4095971;chr3L_4096068_4097205,chr3L_4096068_4097506 chr3L_4095972_4096067 chr3L_4095775_4095874;chr3L_4097507_4097804 100.00 100.00 100.00 100.00 83.33 NA NA 100.00 100.00 90.91 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 94.44 NA 96.97 90.91 91.67 90.91 100.00 91.67 92.31 100.00 100.00 90.91 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 94.44 NA 94.44 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 92.31 100.00 K intron_retention CG9586 chr2L - chr2L_9165843_9165942 chr2L_9165842_9165843;chr2L_9165942_9165943 chr2L_9165830_9165842;chr2L_9165943_9166164 0.62 0.00 0.00 0.00 1.15 0.00 0.60 0.70 0.44 1.16 0.00 1.44 0.00 0.00 0.00 1.35 0.00 0.00 0.00 0.76 1.14 0.85 0.95 0.96 1.15 0.00 2.20 3.95 1.31 0.00 0.00 0.00 0.81 0.00 0.00 0.79 0.00 0.65 1.74 1.03 0.62 0.95 0.00 0.00 0.00 2.39 0.50 0.00 1.06 1.20 2.89 0.95 1.00 0.60 0.90 0.00 0.61 1.05 K intron_retention CG15317 chrX - chrX_9450280_9450333 chrX_9450279_9450280;chrX_9450333_9450334 chrX_9450208_9450279;chrX_9450334_9450662 0.00 0.00 0.00 0.00 NA 0.00 7.69 0.00 0.00 NA NA 6.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 NA 0.00 0.00 0.00 0.00 7.14 6.67 3.85 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.41 K intron_retention CG7967,I_chr3L_1652265_1652330,I_chr3L_1659363_1659845,I_chr3L_1667736_1667806 chr3L - chr3L_1652265_1652331 chr3L_1652264_1652265;chr3L_1652331_1652332 chr3L_1652165_1652264;chr3L_1652332_1652430 1.19 0.00 3.25 1.14 0.00 0.94 2.44 2.00 1.19 0.00 2.04 1.57 0.00 0.00 1.57 0.00 2.35 1.49 2.17 1.29 0.00 1.99 0.00 2.21 3.19 3.18 3.23 7.50 0.00 0.73 1.32 0.00 0.00 0.00 0.95 3.08 1.52 0.91 1.23 1.49 1.83 0.39 3.19 0.00 0.00 0.74 1.11 0.49 1.40 0.00 0.00 2.25 0.00 1.42 0.00 2.72 1.57 0.87 K intron_retention CG17471,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1216417_1216467 chr4_1216416_1216417;chr4_1216467_1216468 chr4_1216286_1216416;chr4_1216468_1216716 0.00 0.00 0.00 2.63 0.00 0.00 2.22 1.85 0.00 NA 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 3.30 0.00 0.00 NA NA 0.00 2.78 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Nrg,I_chrX_8411470_8425729,RI_chrX_8411636_8425729,RI_chrX_8412432_8425557 chrX + chrX_8411454_8425729;chrX_8411543_8425729 chrX_8411668_8425729 chrX_8425730_8425829;chrX_8411428_8411453 12.50 7.69 NA 0.00 NA NA 18.18 7.14 16.22 NA NA 0.00 12.50 14.29 NA 12.50 10.00 NA NA 9.52 NA NA 20.00 NA NA NA NA NA NA NA 0.00 NA 13.33 13.04 NA NA NA NA NA 12.50 NA 7.41 10.00 NA NA NA NA 27.27 10.00 NA NA NA NA NA 12.50 NA NA 18.18 K jcn_only_AD RpS13,RI_chr2L_8364126_8364208,I_chr2L_8364128_8364191 chr2L - chr2L_8364126_8364208 chr2L_8364126_8364187 chr2L_8364028_8364125;chr2L_8364209_8364291 99.98 99.99 99.94 99.96 100.00 99.97 99.98 99.99 99.98 100.00 99.99 99.97 99.99 99.98 99.66 99.99 100.00 99.98 99.97 99.98 99.98 100.00 99.99 100.00 99.94 99.97 99.91 99.93 100.00 100.00 99.96 99.98 99.96 99.96 99.99 99.98 100.00 99.98 99.99 99.97 100.00 99.99 99.99 100.00 99.98 99.93 99.98 99.98 99.98 99.99 99.99 99.97 99.99 99.98 99.98 99.98 99.96 99.97 K alternative_donor CG32532 chrX - chrX_19427304_19428011;chrX_19427304_19427668 chrX_19427304_19428023 chrX_19427087_19427303;chrX_19428024_19428129 45.00 NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.00 NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor RpL27A,E_chr2L_4457411_4457977,I_chr2L_4458058_4458120 chr2L - chr2L_4458058_4458274;chr2L_4458058_4458140;chr2L_4458058_4458162 chr2L_4458058_4458288 chr2L_4457978_4458057;chr2L_4458289_4458357 88.64 89.35 98.31 98.93 96.80 97.88 93.67 99.03 95.11 82.95 97.48 93.99 96.53 87.32 98.39 95.48 98.30 94.52 98.46 96.00 97.07 88.64 75.59 81.29 80.77 97.26 74.26 76.32 59.87 77.50 82.54 90.28 86.36 98.19 79.17 72.16 74.58 75.21 75.00 67.93 78.79 97.88 98.45 77.42 93.57 81.33 80.92 80.91 95.57 81.75 73.33 84.40 87.58 64.36 98.24 75.48 89.74 88.79 K jcn_only_AD CG5059,I_chr3L_20509233_20511440 chr3L - chr3L_20509233_20510360 chr3L_20509233_20509798 chr3L_20509133_20509232;chr3L_20510361_20510423 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention eIF5B chr3L - chr3L_3460099_3460171 chr3L_3460098_3460099;chr3L_3460171_3460172 chr3L_3458948_3460098;chr3L_3460172_3460646 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette smid,I_chr3L_7375166_7375310,I_chr3L_7375435_7375508 chr3L + chr3L_7375832_7375993 chr3L_7375832_7375887;chr3L_7375936_7375993 chr3L_7375888_7375935 chr3L_7375509_7375831;chr3L_7375994_7376334 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 96.15 98.04 100.00 100.00 100.00 97.83 100.00 100.00 100.00 98.25 100.00 100.00 96.88 100.00 100.00 90.62 97.22 94.74 58.06 100.00 100.00 100.00 98.31 97.56 100.00 100.00 100.00 100.00 96.88 97.62 100.00 98.39 100.00 100.00 95.65 100.00 100.00 100.00 100.00 95.65 100.00 100.00 91.30 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Tao-1,E_chrX_19467010_19469645 chrX - chrX_19467498_19469390 chrX_19469008_19469390 chrX_19469391_19470002;chrX_19467324_19467497 6.35 5.98 4.50 11.21 4.49 6.38 12.35 4.67 5.33 8.06 7.28 13.03 5.36 6.40 5.61 7.43 5.11 4.94 4.85 4.66 5.84 30.26 7.38 6.44 9.15 8.00 11.43 15.79 11.45 7.29 6.74 13.04 12.35 6.44 6.33 4.83 4.89 6.09 4.45 7.82 12.99 5.49 5.19 6.22 4.35 5.62 3.73 9.55 6.35 7.64 8.02 7.63 4.55 5.00 6.55 5.63 4.35 5.00 K intron_retention Aldh-III,RE_chr2R_3355332_3355720,I_chr2R_3356541_3356614,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3355332_3356864 chr2R_3355331_3355332;chr2R_3356864_3356865 chr2R_3355296_3355331;chr2R_3356865_3357018 92.31 92.00 86.96 91.18 100.00 95.24 100.00 95.24 94.59 66.67 100.00 97.06 89.47 94.12 96.15 95.00 100.00 100.00 89.29 97.22 93.75 92.31 90.00 86.96 100.00 92.86 93.10 NA NA 91.67 84.62 88.89 87.50 100.00 90.91 90.91 84.21 88.89 92.59 83.33 NA 94.59 94.74 100.00 NA 81.82 86.67 84.21 96.77 86.67 90.48 85.71 91.67 89.47 100.00 95.24 93.33 91.67 K intron_retention Gap1 chr3L - chr3L_9833423_9833611 chr3L_9833422_9833423;chr3L_9833611_9833612 chr3L_9832217_9833422;chr3L_9833612_9834663 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 98.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention maf-S,CG11110 chr2R + chr2R_16528624_16528685 chr2R_16528623_16528624;chr2R_16528685_16528686 chr2R_16528563_16528623;chr2R_16528686_16529179 0.00 0.00 0.00 1.83 0.00 0.00 0.84 1.65 3.17 4.76 0.00 0.85 0.00 1.69 0.00 0.00 0.00 0.00 2.50 0.62 1.56 0.00 0.00 0.00 0.00 0.00 0.00 5.41 8.93 0.00 0.00 0.00 1.92 0.00 3.28 0.00 0.00 0.00 2.38 2.56 1.25 0.79 0.00 0.00 1.94 2.34 2.63 0.00 1.68 0.00 4.62 7.69 2.38 0.00 0.00 3.03 3.70 0.00 K intron_retention I_chr2R_19922148_19922210,sei,I_chr2R_19935072_19935138,I_chr2R_19939693_19939776,I_chr2R_19946657_19946733,I_chr2R_19948517_19948682 chr2R + chr2R_19938130_19938181 chr2R_19938129_19938130;chr2R_19938181_19938182 chr2R_19937886_19938129;chr2R_19938182_19938252 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_last_exon br,I_chrX_1517022_1518170,chrX_1531825_1532171.0,chrX_1532359_1533289.0,chrX_1533577_1534629.0,chrX_1535554_1536485.0,chrX_1539850_1540090.0,chrX_1540212_1541396.0,chrX_1544237_1547430.0,chrX_1547632_1547887.0 chrX + chrX_1531368_1537100,chrX_1531368_1536917;chrX_1531368_1552820;chrX_1531368_1541397 chrX_1531368_1548424 chrX_1537101_1539195;chrX_1552821_1559444;chrX_1541398_1544171 chrX_1548425_1550023 chrX_1531317_1531367 55.77 58.18 63.83 49.00 61.90 60.98 53.97 68.29 65.67 46.15 63.04 60.19 51.35 62.00 65.38 58.21 28.12 63.89 62.22 50.45 65.12 26.56 59.43 48.72 48.78 58.97 55.74 14.89 41.51 63.37 65.38 48.65 51.11 65.59 54.69 47.17 51.00 58.93 49.38 51.46 36.59 69.52 56.82 55.77 34.78 46.97 48.94 49.12 65.45 42.25 58.44 54.76 62.50 45.71 59.68 50.00 60.42 65.35 K intron_retention Su(var)3-9,I_chr3R_11088444_11088825 chr3R - chr3R_11085409_11088268 chr3R_11085408_11085409;chr3R_11088268_11088269 chr3R_11085172_11085408;chr3R_11088269_11088443 0.49 0.29 0.77 1.88 0.00 1.87 1.03 0.65 0.00 1.13 0.00 0.49 1.04 0.00 0.66 0.88 0.53 0.00 0.00 0.71 0.89 0.47 0.64 0.25 0.81 0.88 1.32 1.08 0.83 0.00 0.88 0.00 0.00 0.32 0.00 0.77 0.43 0.00 0.00 0.34 0.48 0.93 1.16 0.55 0.00 1.03 0.00 0.82 0.48 0.37 0.23 0.00 0.00 0.41 1.15 0.00 0.57 0.73 K intron_retention CG31638,I_chr2L_6494875_6494937 chr2L + chr2L_6495105_6496056 chr2L_6495104_6495105;chr2L_6496056_6496057 chr2L_6494938_6495104;chr2L_6496057_6496971 7.37 8.00 15.00 16.28 0.00 0.00 15.38 7.32 11.63 0.00 NA 6.25 4.76 11.11 8.70 28.57 12.50 NA 12.00 6.90 5.56 5.00 4.65 7.14 6.90 0.00 5.41 NA NA 9.52 8.33 18.75 3.92 12.50 2.78 4.88 0.00 13.33 2.94 7.69 10.00 10.81 20.00 3.85 0.00 5.88 8.33 6.25 19.35 NA 7.41 6.67 17.65 0.00 8.33 9.68 0.00 13.79 K intron_retention CG5946 chr3L - chr3L_11811288_11811353 chr3L_11811287_11811288;chr3L_11811353_11811354 chr3L_11811188_11811287;chr3L_11811354_11812007 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.63 1.90 0.00 0.00 0.79 0.00 1.82 0.00 0.00 0.00 0.00 1.87 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.52 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 K alternative_acceptor CG31715,I_chr2L_10341933_10342151,I_chr2L_10341933_10342155 chr2L + chr2L_10341933_10342155;chr2L_10341933_10342151 chr2L_10341933_10342149 chr2L_10341833_10341932;chr2L_10342156_10342233 96.97 100.00 100.00 96.36 100.00 95.24 96.43 94.92 98.46 100.00 95.24 97.92 96.43 96.97 94.59 97.87 94.44 95.24 97.30 95.74 95.00 100.00 100.00 96.30 100.00 93.94 100.00 100.00 90.91 100.00 96.97 95.83 94.44 94.83 100.00 93.75 100.00 93.33 100.00 96.43 93.33 98.21 96.00 100.00 100.00 96.88 95.65 92.86 93.10 100.00 100.00 93.75 100.00 95.45 97.06 100.00 97.67 97.30 K intron_retention Traf-like,I_chrX_16309561_16309689,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16310119_16310187 chrX_16310118_16310119;chrX_16310187_16310188 chrX_16309690_16310118;chrX_16310188_16310596 2.74 3.45 0.00 3.03 2.27 0.00 1.20 5.38 1.49 0.00 0.00 5.61 0.00 3.33 1.59 4.88 3.92 4.48 5.08 3.28 3.57 9.46 3.12 2.74 6.82 0.00 0.00 7.41 4.76 0.00 0.00 0.00 0.00 3.96 0.00 4.35 2.99 0.00 2.70 4.76 0.00 1.92 0.00 5.00 0.00 3.49 3.77 0.00 4.00 4.62 2.50 0.00 3.64 0.00 2.78 3.33 2.04 0.00 K intron_retention betaInt-nu chr2L + chr2L_21055999_21056104 chr2L_21055998_21055999;chr2L_21056104_21056105 chr2L_21055803_21055998;chr2L_21056105_21058044 0.00 0.00 4.65 3.77 2.33 0.00 1.12 5.88 0.00 0.00 0.00 3.39 0.00 0.00 8.00 3.23 0.00 0.00 0.00 2.82 0.00 7.41 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 3.23 NA 14.29 2.78 0.00 NA 0.00 0.00 0.00 0.00 0.00 4.21 0.00 3.33 0.00 10.00 NA 7.41 2.50 NA 1.82 0.00 NA NA 0.00 4.76 0.00 9.09 K intron_retention stj chr2R + chr2R_9698342_9701304 chr2R_9698341_9698342;chr2R_9701304_9701305 chr2R_9698258_9698341;chr2R_9701305_9701385 14.58 14.29 10.00 14.29 6.67 10.53 27.03 15.00 18.87 0.00 NA 30.00 16.67 11.11 8.33 21.43 5.26 3.45 26.67 17.78 45.45 21.43 20.00 12.90 19.23 5.00 11.63 33.33 40.00 13.33 12.00 23.08 23.33 7.69 7.69 13.33 7.27 15.38 9.09 20.41 11.11 25.00 NA 25.64 25.00 20.00 7.41 21.74 14.29 15.38 12.12 22.22 19.51 14.29 12.50 11.76 17.39 14.58 K jcn_only_AD Sdc,RI_chr2R_17286086_17286391,I_chr2R_17286089_17286391,I_chr2R_17286819_17367595,I_chr2R_17324594_17367595 chr2R - chr2R_17286089_17286679 chr2R_17286089_17286391 chr2R_17286037_17286088;chr2R_17286680_17286818 1.33 1.54 0.00 5.15 0.00 0.00 4.84 2.78 1.32 0.00 14.29 0.00 NA 1.89 1.54 1.28 0.00 0.00 0.00 1.46 4.08 1.80 2.30 0.00 2.33 0.00 1.59 2.86 0.00 1.03 0.00 2.70 0.73 4.11 1.39 3.57 1.33 0.00 3.16 2.35 0.00 1.27 4.35 3.45 5.77 0.00 0.00 0.85 2.11 NA 0.00 0.00 0.00 0.00 1.39 2.33 0.00 1.71 K alternative_acceptor CG3774,I_chrX_6114220_6114292 chrX + chrX_6114220_6114347 chrX_6114220_6114292 chrX_6114120_6114219;chrX_6114348_6114392 73.33 66.67 68.42 78.95 83.33 70.59 58.82 74.07 76.47 72.73 76.92 81.82 66.67 60.00 66.67 77.78 75.00 61.54 73.33 73.33 84.62 86.67 93.75 87.50 88.89 83.33 85.71 63.64 60.00 70.00 66.67 69.23 89.66 80.95 58.82 66.67 77.27 69.23 75.00 51.85 76.47 66.67 63.64 87.50 50.00 73.33 91.67 52.38 75.86 72.73 63.64 64.71 81.82 80.00 61.90 75.00 70.59 68.18 N intron_retention CG6621 chr3R - chr3R_6716568_6716815 chr3R_6716567_6716568;chr3R_6716815_6716816 chr3R_6715539_6716567;chr3R_6716816_6717113 15.48 NA NA 22.73 NA NA 12.50 19.35 28.57 NA NA 31.58 NA NA NA 11.76 NA 11.76 30.77 12.50 NA NA 8.00 26.67 NA NA 18.18 NA NA NA NA NA NA 27.78 NA NA 0.00 14.29 17.65 11.76 11.11 30.00 NA NA NA 11.76 10.53 17.65 30.00 16.67 7.69 NA NA 14.29 25.00 10.53 12.00 16.67 K jcn_only_AA CG5355,I_chr2L_10413213_10413324 chr2L - chr2L_10411009_10411090 chr2L_10411037_10411090 chr2L_10411091_10411363;chr2L_10410537_10411008 100.00 100.00 99.17 99.54 100.00 100.00 99.39 100.00 99.64 100.00 100.00 100.00 100.00 100.00 100.00 99.27 100.00 100.00 100.00 99.65 100.00 100.00 100.00 99.48 98.96 97.56 100.00 100.00 100.00 100.00 98.89 99.15 100.00 99.39 99.16 96.23 100.00 100.00 100.00 99.05 100.00 100.00 100.00 98.86 98.92 98.78 100.00 100.00 100.00 98.77 100.00 100.00 100.00 99.30 100.00 98.61 100.00 100.00 K intron_retention cl chr2L + chr2L_5520701_5521135 chr2L_5520700_5520701;chr2L_5521135_5521136 chr2L_5520619_5520700;chr2L_5521136_5521382 1.05 1.21 1.09 4.62 0.73 0.50 1.38 0.84 0.83 1.97 0.65 2.35 1.55 0.00 0.47 1.73 0.00 1.27 0.00 1.72 0.00 5.28 1.00 0.88 0.95 0.00 1.05 2.05 1.46 1.57 0.00 0.62 0.41 2.54 0.98 1.43 0.54 1.27 1.13 1.13 0.92 1.90 1.48 0.99 0.80 1.36 1.06 0.93 1.54 1.68 1.05 1.99 1.38 0.28 0.61 0.70 0.90 0.48 K alternative_donor CG32772,CG6903 chrX + chrX_4803242_4803484;chrX_4803395_4803484;chrX_4803206_4803484 chrX_4803353_4803484 chrX_4803485_4803830;chrX_4803181_4803205 20.00 NA NA 50.00 NA NA 25.00 0.00 20.00 NA NA 0.00 NA 20.00 NA 25.00 NA NA 0.00 NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA 0.00 0.00 NA NA 25.00 NA NA 0.00 NA NA NA NA NA NA NA NA 28.57 N jcn_only_AD CG11151 chrX + chrX_13634528_13634710;chrX_13634652_13634710 chrX_13634146_13634710 chrX_13634711_13635156;chrX_13633982_13634145 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.10 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.01 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG32512 chrX - chrX_20934443_20934828 chrX_20934442_20934443;chrX_20934828_20934829 chrX_20933620_20934442;chrX_20934829_20935070 11.11 9.09 10.71 17.24 11.43 8.33 12.12 20.00 18.64 7.32 16.67 24.00 NA NA 19.35 17.39 13.79 22.73 15.38 12.20 15.79 9.02 10.00 10.34 23.08 4.17 10.00 10.00 5.88 12.82 13.04 19.05 10.26 18.42 21.74 11.11 9.52 7.69 10.00 15.69 3.85 10.53 10.53 6.35 9.68 0.00 8.82 7.69 17.50 11.76 12.77 15.38 6.25 11.54 11.76 0.00 3.03 5.26 K alternative_acceptor Pof chr2R + chr2R_20556998_20557144;chr2R_20556998_20557046 chr2R_20556998_20557050 chr2R_20556952_20556997;chr2R_20557145_20557370 66.67 66.67 16.67 71.43 NA 71.43 NA 57.14 NA NA NA 63.64 NA NA 50.00 57.14 NA 66.67 NA 54.55 66.67 NA 72.73 55.56 NA NA NA NA NA NA NA NA NA 55.56 NA NA 66.67 75.00 85.71 NA NA 60.00 NA NA NA 66.67 66.67 NA 66.67 77.78 57.14 60.00 85.71 83.33 57.14 40.00 NA 60.00 K intron_retention FK506-bp1,RI_chr3R_11168116_11168762,I_chr3R_11171570_11171630 chr3R - chr3R_11158271_11158337 chr3R_11158270_11158271;chr3R_11158337_11158338 chr3R_11157301_11158270;chr3R_11158338_11158550 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor mRpL28,CG3792,CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4975101_4975173 chr2L_4975101_4975152 chr2L_4975032_4975100;chr2L_4975174_4975238 100.00 100.00 97.78 100.00 100.00 100.00 100.00 98.48 100.00 100.00 95.83 100.00 100.00 100.00 100.00 98.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 93.62 98.75 100.00 100.00 98.89 100.00 98.70 100.00 97.92 95.83 100.00 97.67 100.00 100.00 98.63 100.00 100.00 98.91 99.31 100.00 100.00 100.00 100.00 98.65 100.00 100.00 98.59 100.00 98.53 100.00 100.00 K alternative_donor CG33558,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,EI_chr2R_2820947_2821570,CREI_chr2R_2832933_2850384 chr2R - chr2R_2817876_2819347;chr2R_2817876_2818567 chr2R_2817876_2818978 chr2R_2817851_2817875;chr2R_2819348_2819447 64.29 50.00 67.86 55.56 64.29 64.71 41.67 47.62 70.18 55.56 68.42 57.81 58.33 56.52 71.88 62.96 62.07 53.33 59.09 63.64 69.57 47.37 60.49 59.02 41.94 69.23 70.27 46.15 57.89 45.45 73.33 68.57 71.43 57.14 64.10 70.21 65.06 65.79 61.02 65.12 75.00 65.08 70.00 60.47 61.22 77.61 70.27 68.66 69.23 56.14 64.29 64.29 75.00 60.00 65.38 73.08 79.41 74.51 K alternative_donor fz2 chr3L - chr3L_19153786_19163552;chr3L_19153786_19163618 chr3L_19153786_19162943 chr3L_19153719_19153785;chr3L_19163619_19163743 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD shi,RI_chrX_15786633_15786860,RE_chrX_15793108_15795563 chrX + chrX_15786474_15786860;chrX_15786603_15786860;chrX_15786285_15786860;chrX_15786615_15786860;chrX_15786200_15786860 chrX_15786394_15786860 chrX_15786861_15786960;chrX_15786192_15786199 6.15 16.67 6.25 10.34 0.00 10.71 5.05 2.60 0.91 NA 2.78 14.81 1.96 2.22 2.70 7.25 0.00 NA 6.15 5.56 2.70 NA 6.82 3.33 7.41 3.57 4.44 NA NA 2.44 1.96 NA 7.14 3.41 9.68 13.64 8.70 13.04 NA 7.35 11.11 7.46 8.33 9.76 NA 17.14 NA 1.92 4.29 NA 2.22 10.00 NA NA 4.88 NA NA 15.15 K intron_retention Bap170 chr2R + chr2R_2524532_2524593 chr2R_2524531_2524532;chr2R_2524593_2524594 chr2R_2524500_2524531;chr2R_2524594_2525515 98.33 98.15 98.04 100.00 97.44 100.00 100.00 100.00 100.00 95.45 100.00 98.88 100.00 97.44 98.33 98.18 100.00 100.00 97.44 98.11 100.00 94.55 96.88 98.51 97.87 100.00 98.68 97.22 97.37 100.00 92.50 97.14 97.37 98.44 98.08 96.39 99.07 98.33 95.74 97.98 97.14 100.00 100.00 97.83 100.00 97.78 100.00 96.10 98.78 97.50 98.88 97.22 97.73 100.00 100.00 100.00 100.00 100.00 K intron_retention RpL3,E_chr3R_7047964_7050565,I_chr3R_7048451_7049116,I_chr3R_7048452_7048540,I_chr3R_7048452_7049579,snoRNA:Me18S-A425,snoRNA:Psi28S-291,I_chr3R_7049970_7050189 chr3R + chr3R_7048452_7048809 chr3R_7048451_7048452;chr3R_7048809_7048810 chr3R_7048352_7048451;chr3R_7048810_7049252 16.39 16.39 17.78 17.81 17.89 16.28 16.03 21.19 19.72 10.97 20.99 22.16 19.10 23.44 19.42 21.10 15.66 17.28 12.87 19.13 24.71 9.35 11.95 11.11 16.96 19.28 15.76 13.71 14.39 8.46 4.70 16.16 14.86 19.63 18.52 20.72 10.92 19.51 13.08 15.76 25.00 18.72 21.13 10.71 12.87 15.79 10.67 18.66 15.92 15.00 10.80 9.47 20.50 13.27 21.43 8.60 21.68 21.97 K jcn_only_AD Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2364480;chr2L_2361586_2364836;chr2L_2361586_2365060;chr2L_2361586_2364302;chr2L_2361586_2364594;chr2L_2361586_2364312;chr2L_2361586_2364889 chr2L_2361586_2364640 chr2L_2361486_2361585;chr2L_2365061_2365065 34.82 42.00 34.54 38.52 28.24 33.11 27.30 30.79 29.37 38.78 26.29 33.64 36.84 34.41 36.94 33.75 31.18 29.94 29.46 32.06 26.42 58.14 33.15 37.50 32.09 32.02 34.82 56.18 58.28 63.89 27.54 64.50 72.77 33.52 46.56 51.47 29.53 30.00 25.27 63.01 65.06 36.59 28.08 57.83 56.94 56.60 52.38 65.22 31.89 28.89 30.53 36.43 49.50 38.24 29.68 40.40 36.23 74.38 K cassette CG4495,I_chr2L_7183323_7183502 chr2L + chr2L_7182900_7183502 chr2L_7182900_7183162;chr2L_7183323_7183502 chr2L_7183163_7183322 chr2L_7182707_7182899;chr2L_7183503_7183602 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor Pi3K92E,I_chr3R_16459436_16459551,I_chr3R_16459436_16459848 chr3R - chr3R_16459436_16459848;chr3R_16459436_16460267;chr3R_16459436_16460287;chr3R_16459436_16459551 chr3R_16459436_16460340 chr3R_16459336_16459435;chr3R_16460341_16460435 15.62 16.67 5.26 26.32 28.57 21.43 11.11 15.62 16.67 0.00 8.33 26.32 10.53 25.00 18.18 29.73 29.41 28.57 14.29 15.56 7.69 15.00 21.21 0.00 0.00 0.00 21.05 7.69 0.00 35.00 20.00 0.00 14.29 13.33 20.00 22.73 26.32 18.18 8.33 10.81 14.29 12.50 13.33 17.86 0.00 25.00 30.00 10.00 15.62 37.50 23.81 22.22 0.00 0.00 16.67 25.00 9.09 14.29 K cassette Rcd1 chr2R - chr2R_10037324_10037730 chr2R_10037324_10037392;chr2R_10037459_10037730 chr2R_10037393_10037458 chr2R_10036739_10037323;chr2R_10037731_10037959 7.69 9.09 13.51 1.32 6.52 7.69 7.41 10.42 9.09 NA 10.71 31.82 5.13 10.71 5.56 7.55 10.34 5.26 12.90 5.00 12.50 3.45 9.52 10.53 5.00 3.03 10.00 6.67 14.29 8.70 7.69 3.85 10.00 8.00 12.50 0.00 5.26 10.71 11.43 7.50 NA 8.96 4.35 3.33 6.67 10.53 9.09 5.88 8.47 6.38 3.23 9.09 8.70 11.11 6.82 0.00 2.00 7.69 K alternative_donor key,I_chr2R_20674247_20674291,I_chr2R_20674567_20674813,I_chr2R_20674654_20674897,RI_chr2R_20676692_20676888 chr2R - chr2R_20673207_20673264 chr2R_20673207_20673258 chr2R_20673138_20673206;chr2R_20673265_20673618 28.45 27.71 27.66 35.22 25.37 30.56 30.10 22.39 30.64 25.64 30.49 30.48 29.90 27.84 33.99 30.63 26.76 28.45 31.62 24.02 27.17 26.95 36.36 32.61 33.33 29.50 40.00 32.14 21.10 24.82 30.20 22.95 29.08 27.78 28.35 20.34 28.30 27.12 30.65 32.20 28.95 29.72 24.69 29.58 25.87 24.07 25.23 25.00 30.12 25.25 31.19 26.53 26.15 26.23 31.76 30.88 30.97 23.60 K jcn_only_AA CG2604 chr3R - chr3R_1048869_1048971 chr3R_1048911_1048971 chr3R_1048972_1048994;chr3R_1047347_1048868 66.67 52.88 70.23 71.73 78.89 61.32 69.75 70.90 70.74 60.23 76.81 65.06 78.72 70.41 69.18 74.51 72.82 76.72 76.99 67.02 71.96 69.05 50.34 70.43 66.67 81.63 46.08 44.53 50.43 60.61 73.43 58.25 62.25 70.74 66.67 81.69 57.30 58.59 61.67 57.85 71.23 70.18 68.60 53.63 62.16 60.29 64.18 63.57 68.20 46.85 61.74 67.07 53.85 55.37 67.07 62.71 59.12 66.50 K intron_retention CG16721 chrX + chrX_5776269_5776329 chrX_5776268_5776269;chrX_5776329_5776330 chrX_5775968_5776268;chrX_5776330_5776496 13.79 10.61 11.48 14.93 10.29 11.11 18.75 11.39 14.84 11.11 7.14 10.34 7.46 0.00 14.52 16.07 11.86 15.38 14.29 12.90 9.76 19.59 15.79 13.19 20.45 6.38 18.07 14.29 14.52 9.09 17.53 19.15 17.39 13.43 22.50 25.00 13.79 15.28 12.24 15.12 26.67 11.22 6.67 15.09 12.70 18.33 12.26 7.41 9.18 20.99 15.79 21.74 12.07 18.87 9.38 14.93 8.51 5.41 K intron_retention Nrg,I_chrX_8411470_8425729,RI_chrX_8411636_8425729,RI_chrX_8412432_8425557 chrX + chrX_8411454_8425729 chrX_8411453_8411454;chrX_8425729_8425730 chrX_8411428_8411453;chrX_8425730_8425829 10.43 NA NA NA NA NA 25.00 7.14 21.05 NA NA 0.00 NA NA NA 6.67 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 11.76 NA NA 9.09 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA 18.18 NA NA NA NA NA NA NA NA NA K intron_retention Dscam,F_chr2R_3219886_3225754,I_chr2R_3219886_3226532,FI_chr2R_3219886_3227659,F_chr2R_3219886_3228449,F_chr2R_3219886_3228832,F_chr2R_3226043_3235353,F_chr2R_3227948_3235353,F_chr2R_3228738_3235353,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3219886_3222438 chr2R_3219885_3219886;chr2R_3222438_3222439 chr2R_3219786_3219885;chr2R_3222439_3222451 56.66 NA NA 100.00 NA NA NA 75.00 38.89 NA NA 45.45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 41.67 63.64 NA NA 60.00 NA NA NA NA NA NA NA 53.33 NA 46.15 NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA N intron_retention Hairless chr3R + chr3R_16447945_16448011 chr3R_16447944_16447945;chr3R_16448011_16448012 chr3R_16447658_16447944;chr3R_16448012_16448109 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 82.93 56.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5993331_5994971 chr2R_5993330_5993331;chr2R_5994971_5994972 chr2R_5993231_5993330;chr2R_5994972_5995071 66.67 45.45 NA 59.38 NA NA NA 91.67 64.71 NA NA 72.22 90.00 88.89 NA 80.00 NA NA 80.00 80.00 NA 18.37 66.67 80.00 NA NA 71.43 76.47 31.58 87.50 75.00 46.15 61.54 71.43 NA 46.15 54.55 NA 66.67 54.84 60.00 73.33 NA 41.67 41.67 71.43 66.67 53.85 71.43 NA 57.14 NA 60.00 NA 75.00 NA NA 71.43 K intron_retention p53,CG17119,sav chr3R - chr3R_18878922_18879078 chr3R_18878921_18878922;chr3R_18879078_18879079 chr3R_18878845_18878921;chr3R_18879079_18879154 10.53 NA NA 14.29 NA NA NA 22.22 18.18 NA NA 0.00 NA NA NA 0.00 NA NA NA 13.79 NA NA NA NA NA NA NA NA NA NA 14.29 NA NA 9.09 NA NA NA NA NA 12.50 NA 10.53 NA NA NA NA NA NA 7.41 NA 6.25 NA NA NA NA NA 0.00 NA K intron_retention lt,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22832567_22832618 chr2L_22832566_22832567;chr2L_22832618_22832619 chr2L_22832499_22832566;chr2L_22832619_22832741 0.00 0.00 0.00 4.12 0.00 0.00 6.67 2.11 1.36 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 3.92 1.80 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 2.94 4.48 0.00 0.00 2.00 0.00 0.70 0.00 6.12 0.00 0.00 0.00 0.00 3.88 0.00 2.63 0.00 0.00 0.00 0.00 1.12 0.69 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 1.55 K alternative_donor Pk61C,CE_chr3L_129889_141769,I_chr3L_132531_133824,I_chr3L_133962_134014 chr3L + chr3L_132531_135457;chr3L_131934_135457;chr3L_131959_135457 chr3L_132056_135457 chr3L_135458_135842;chr3L_131849_131933 0.00 6.25 0.00 0.00 0.00 0.00 3.33 5.13 0.00 0.00 0.00 0.00 3.85 0.00 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.11 0.00 8.33 25.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention inaD,I_chr2R_18744912_18744978 chr2R - chr2R_18744497_18744560 chr2R_18744496_18744497;chr2R_18744560_18744561 chr2R_18744281_18744496;chr2R_18744561_18744581 93.60 NA NA 90.91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.30 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG12703 chrX + chrX_19645123_19645380;chrX_19645198_19645380;chrX_19645200_19645380;chrX_19645202_19645380;chrX_19644924_19645380 chrX_19645171_19645380 chrX_19645381_19645579;chrX_19644833_19644923 84.44 85.71 86.21 70.93 89.47 82.35 79.79 76.23 83.14 80.00 90.48 82.07 89.36 80.56 88.75 88.66 82.54 82.28 89.71 84.52 92.42 90.28 82.52 82.61 85.71 90.57 78.46 90.00 81.13 84.04 88.51 79.63 91.67 84.43 84.72 91.67 83.33 90.48 80.52 83.74 83.33 85.00 84.62 88.10 83.78 89.13 83.82 83.10 82.91 88.14 82.28 93.48 90.00 84.44 88.51 83.33 80.00 85.71 K intron_retention CG9727 chr3R - chr3R_2280917_2280979 chr3R_2280916_2280917;chr3R_2280979_2280980 chr3R_2280674_2280916;chr3R_2280980_2281968 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 4.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 N intron_retention spz chr3R - chr3R_22892773_22892843 chr3R_22892772_22892773;chr3R_22892843_22892844 chr3R_22892844_22892921 36.84 NA NA NA NA NA 36.84 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention wdn chr3R - chr3R_24634090_24634143 chr3R_24634089_24634090;chr3R_24634143_24634144 chr3R_24633699_24634089;chr3R_24634144_24634415 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.57 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.48 100.00 100.00 100.00 100.00 98.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention pic chr3R + chr3R_8878757_8878958 chr3R_8878756_8878757;chr3R_8878958_8878959 chr3R_8878345_8878756;chr3R_8878959_8879883 0.00 0.00 0.00 2.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 4.23 1.54 0.00 0.00 1.59 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.41 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention EF_chr2R_8548702_8595112,nemy chr2R - chr2R_8560543_8560604 chr2R_8560542_8560543;chr2R_8560604_8560605 chr2R_8560169_8560542;chr2R_8560605_8560844 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Galpha49B,I_chr2R_8501587_8501648,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500357_8501648 chr2R_8500390_8501648 chr2R_8501649_8501748;chr2R_8500333_8500356 90.00 NA 87.50 83.33 NA NA 77.78 90.00 94.44 NA 100.00 84.62 100.00 100.00 88.89 87.50 NA 88.89 75.00 90.91 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA 92.31 NA NA NA NA NA NA NA 100.00 85.71 NA NA NA NA NA 80.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention Tango5,noncoding_22970,I_chrX_10659836_10661185 chrX - chrX_10656468_10658202 chrX_10656467_10656468;chrX_10658202_10658203 chrX_10656442_10656467;chrX_10658203_10658269 10.53 22.50 11.43 8.11 13.79 10.53 25.32 10.71 10.88 15.38 8.70 7.32 9.09 13.79 9.28 13.70 7.27 8.93 8.57 11.18 10.00 8.64 9.86 6.67 13.33 9.84 30.56 21.95 9.43 16.67 10.53 15.38 9.26 11.70 7.69 12.12 7.48 8.20 7.58 10.00 17.86 9.23 4.55 7.84 4.55 18.75 11.76 10.87 8.57 14.71 15.09 11.76 8.33 26.09 7.59 11.11 14.29 15.15 K intron_retention Top2,I_chr2L_19452794_19453250 chr2L - chr2L_19448062_19448142 chr2L_19448061_19448062;chr2L_19448142_19448143 chr2L_19447357_19448061;chr2L_19448143_19451180 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.75 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32528,Alr chrX + chrX_19640343_19640674 chrX_19640342_19640343;chrX_19640674_19640675 chrX_19640090_19640342;chrX_19640675_19640764 0.85 0.77 1.14 0.00 0.98 1.32 1.30 1.49 0.82 0.00 0.00 0.38 2.11 0.90 1.20 1.40 1.89 1.28 0.00 1.10 2.42 0.00 1.26 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.69 3.70 0.58 1.03 3.20 0.00 0.54 0.75 0.50 0.00 1.75 1.08 1.98 2.02 1.47 1.28 0.88 0.66 0.00 0.00 1.27 0.00 0.00 0.85 1.69 1.68 0.00 0.00 K intron_retention Pmi,PGRP-LD chr3L + chr3L_5773234_5773483 chr3L_5773233_5773234;chr3L_5773483_5773484 chr3L_5773221_5773233;chr3L_5773484_5773632 6.90 5.56 5.71 11.32 0.00 7.41 18.18 17.65 6.90 NA 9.68 6.90 0.00 13.79 5.00 2.13 0.00 9.68 0.00 5.00 0.00 NA 11.76 10.53 NA 15.38 23.08 16.67 20.00 NA 14.29 9.09 11.76 3.64 NA NA 0.00 NA 0.00 12.50 NA 0.00 0.00 NA NA 5.88 9.52 5.26 3.12 NA 7.69 NA 5.88 NA 10.71 NA 0.00 7.69 K jcn_only_AD siz chr3L + chr3L_21067150_21067315 chr3L_21067152_21067315 chr3L_21067316_21068448;chr3L_21066314_21067149 100.00 NA NA NA NA NA NA 100.00 100.00 96.43 NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 95.83 NA 100.00 100.00 100.00 NA NA NA NA 100.00 NA 100.00 K alternative_donor Lam chr2L + chr2L_5543795_5544037 chr2L_5543799_5544037 chr2L_5544038_5544741;chr2L_5543325_5543794 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Cap-H2 chr3R + chr3R_6589674_6589832;chr3R_6589674_6589835 chr3R_6589674_6589871 chr3R_6588751_6589673;chr3R_6589872_6590095 1.39 NA NA 4.76 NA 0.00 NA 4.35 NA NA NA 0.00 NA NA NA NA NA NA 0.00 2.78 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 11.11 NA NA NA NA NA NA 7.50 NA NA NA NA NA NA NA NA NA K jcn_only_AA F_chr3R_19799277_19802225,CG5902,Rab7 chr3R + chr3R_19812933_19812991 chr3R_19812933_19812988 chr3R_19812754_19812932;chr3R_19812992_19814545 94.17 98.41 93.55 92.49 95.33 93.16 93.08 96.26 93.73 97.10 93.00 93.58 96.77 94.79 93.69 94.89 94.44 97.62 89.93 96.31 93.42 94.44 95.24 96.20 91.67 96.49 93.83 95.31 94.59 93.75 94.59 93.33 93.64 92.86 93.27 94.17 93.87 94.12 95.31 93.64 94.17 96.63 89.33 96.71 93.60 92.45 95.90 93.01 93.93 95.69 92.50 96.64 93.98 87.04 94.53 95.24 95.07 94.92 K alternative_acceptor CG14741 chr3R - chr3R_7900616_7900895;chr3R_7900613_7900895 chr3R_7900593_7900895 chr3R_7900896_7901144;chr3R_7900525_7900592 22.08 21.95 15.56 7.09 15.79 20.69 11.54 9.68 9.84 26.67 4.17 22.83 30.00 15.56 14.29 14.78 12.12 10.64 9.52 21.59 13.73 24.49 25.00 40.00 19.05 13.95 21.43 54.55 16.00 30.91 24.53 25.00 45.00 21.79 35.48 22.08 37.14 32.35 22.50 33.33 32.26 12.96 12.50 22.22 41.30 25.00 25.00 36.90 16.36 27.27 18.92 19.05 31.82 36.36 16.67 25.00 31.43 48.10 K alternative_donor I_chr2L_11009331_11009442,dUTPase,I_chr2L_11011380_11011453 chr2L + chr2L_11011394_11011471;chr2L_11011419_11011471 chr2L_11011380_11011471 chr2L_11011472_11011553;chr2L_11011335_11011379 72.09 79.41 73.72 50.00 73.29 69.90 67.10 69.65 70.57 78.02 74.31 70.43 69.42 67.21 69.51 64.53 67.92 76.15 63.58 65.80 72.09 88.00 82.83 84.55 77.55 39.68 61.19 68.75 58.82 83.33 63.72 70.15 66.67 64.44 75.51 84.09 88.89 88.39 87.86 78.35 42.86 67.01 66.40 78.72 76.29 76.19 88.04 51.28 63.54 84.39 76.54 80.72 86.32 89.19 67.53 82.73 84.78 63.77 K intron_retention rudimentary,I_chrX_16559455_16560067,I_chrX_16561903_16561969 chrX + chrX_16559361_16560067 chrX_16559360_16559361;chrX_16560067_16560068 chrX_16559355_16559360;chrX_16560068_16560167 2.00 0.00 0.00 5.41 0.00 2.50 2.63 0.00 2.82 0.00 6.67 3.70 6.25 0.00 5.71 0.00 3.23 0.00 4.35 3.19 0.00 2.00 0.00 2.30 0.00 0.00 0.00 3.85 9.09 6.06 9.09 4.35 2.70 3.45 2.22 2.00 3.19 1.92 1.90 2.60 0.00 2.15 0.00 0.00 3.28 0.00 0.00 5.26 3.28 2.82 1.12 0.00 0.00 3.12 0.00 1.72 1.98 0.00 K jcn_only_AA C3G chrX - chrX_6681282_6681383 chrX_6681300_6681383 chrX_6681384_6681553;chrX_6681129_6681281 2.67 2.76 3.92 1.56 2.34 3.11 7.14 0.98 2.59 1.28 1.89 3.63 1.67 7.32 3.01 1.93 0.93 3.55 1.61 2.75 0.88 1.71 2.51 1.49 8.11 3.57 2.58 3.64 0.91 5.43 5.30 2.94 2.05 1.44 2.72 1.30 2.28 0.00 1.21 3.26 3.57 2.74 2.29 2.81 0.92 0.81 4.24 3.19 1.15 2.86 2.67 2.80 3.19 5.00 4.88 4.17 0.00 2.50 K intron_retention chm chr2L + chr2L_7421785_7421843 chr2L_7421784_7421785;chr2L_7421843_7421844 chr2L_7421689_7421784;chr2L_7421844_7422474 0.00 0.00 0.00 0.00 0.00 0.00 3.57 6.45 5.88 NA NA 11.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 2.86 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 8.33 0.00 NA 0.00 NA 0.00 0.00 0.00 5.26 NA 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention Khc,EI_chr2R_12157759_12157824 chr2R - chr2R_12155210_12155280 chr2R_12155209_12155210;chr2R_12155280_12155281 chr2R_12154453_12155209;chr2R_12155281_12157160 0.00 0.00 0.00 0.95 0.00 0.00 1.10 0.87 0.37 0.00 0.00 0.36 0.00 0.00 0.00 1.64 0.00 0.70 1.20 0.71 0.00 1.23 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 1.47 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.69 0.00 K intron_retention CG8079,I_chr2R_11109323_11109403 chr2R + chr2R_11109071_11109232 chr2R_11109070_11109071;chr2R_11109232_11109233 chr2R_11108939_11109070;chr2R_11109233_11109322 6.25 5.56 NA 0.00 NA 0.00 10.53 4.00 18.18 NA NA 14.29 12.50 14.29 0.00 7.69 NA 5.56 NA 4.08 NA NA 6.67 8.70 11.76 NA 0.00 NA NA NA 3.45 NA NA 0.00 0.00 5.56 4.35 6.25 15.00 6.25 NA 10.53 NA NA NA 20.00 NA NA 14.29 12.50 0.00 12.50 NA 0.00 4.35 NA NA NA K alternative_donor vlc chr2R + chr2R_1589953_1590371;chr2R_1589894_1590371;chr2R_1589805_1590371;chr2R_1590318_1590371;chr2R_1589807_1590371;chr2R_1590294_1590371;chr2R_1589722_1590371;chr2R_1589693_1590371 chr2R_1589799_1590371 chr2R_1590372_1590451;chr2R_1589612_1589692 58.23 55.88 53.85 53.03 69.57 52.00 58.18 60.61 60.76 43.75 65.38 60.00 60.98 55.81 45.71 61.43 54.84 20.00 56.25 64.71 55.56 58.82 65.91 62.86 63.64 60.53 57.89 53.85 42.86 75.00 63.04 50.00 56.52 58.23 68.18 70.83 55.56 60.71 80.00 55.26 46.15 52.70 57.89 50.00 41.67 61.90 63.64 35.00 62.20 68.00 60.42 55.56 64.71 81.82 53.70 60.87 62.96 42.11 K intron_retention Dredd,RI_chrX_529342_529426 chrX - chrX_527872_527934 chrX_527871_527872;chrX_527934_527935 chrX_527695_527871;chrX_527935_528084 0.00 0.00 0.00 11.11 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 7.69 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 11.11 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.35 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention sar1,I_chr3R_18185148_18185246 chr3R + chr3R_18182521_18183252 chr3R_18182520_18182521;chr3R_18183252_18183253 chr3R_18182397_18182520;chr3R_18183253_18183393 30.77 NA 19.05 16.13 NA 20.00 42.86 23.08 20.83 NA NA 27.78 30.77 NA 28.57 NA NA NA 35.71 25.93 NA 75.00 NA NA 45.45 NA NA 38.46 61.54 NA 31.58 38.46 30.77 20.00 NA NA NA NA 30.77 43.75 54.55 25.00 NA 30.77 30.77 21.43 33.33 NA 26.32 NA 41.67 NA NA NA NA NA NA 35.29 K alternative_donor CG15609,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12902708_12903184;chr2R_12902708_12903163;chr2R_12902708_12903198 chr2R_12902708_12903167 chr2R_12902608_12902707;chr2R_12903199_12903284 53.85 64.71 50.00 50.00 57.14 47.06 40.00 40.54 52.63 54.55 50.00 48.15 54.55 38.89 62.50 59.38 53.33 53.85 55.00 58.82 45.45 42.86 62.96 46.67 35.71 61.11 78.26 57.14 60.00 62.50 52.00 55.56 62.50 60.00 50.00 79.17 50.00 26.67 53.85 65.52 66.67 60.00 60.00 39.13 33.33 42.86 58.33 55.56 55.88 40.00 43.33 41.67 55.56 36.36 62.50 50.00 50.00 70.00 K alternative_acceptor dlg1,I_chrX_11298230_11299306 chrX + chrX_11283815_11284263 chrX_11283815_11284208 chrX_11283738_11283814;chrX_11284264_11284573 65.12 68.18 75.00 78.79 81.25 90.00 61.11 69.77 63.41 46.15 69.23 65.38 70.00 73.08 69.23 69.23 75.00 70.00 72.00 71.67 91.67 48.15 67.50 53.33 46.43 42.11 76.00 37.50 37.50 65.38 66.67 41.67 64.86 71.43 48.72 53.49 63.64 52.38 68.18 42.37 40.00 69.39 71.43 43.75 NA 52.00 44.00 34.88 72.00 64.71 68.29 51.72 52.38 60.00 75.86 53.33 64.29 55.56 K alternative_acceptor CG5916 chr3R + chr3R_11973086_11973168 chr3R_11973086_11973165 chr3R_11972903_11973085;chr3R_11973169_11973392 90.24 92.86 90.91 91.67 90.00 81.82 87.50 94.12 85.71 NA 88.89 96.30 NA 90.91 93.33 100.00 80.00 72.73 81.82 94.12 69.23 88.89 84.21 92.86 87.50 90.91 90.48 91.67 90.91 90.91 83.33 80.00 91.67 88.24 100.00 77.78 84.62 90.48 90.91 85.71 NA 85.71 88.89 90.00 90.91 81.82 100.00 90.91 81.82 90.91 92.86 NA 88.89 NA 94.44 100.00 81.82 90.00 K alternative_donor par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,I_chr2R_15350149_15350210,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350157_15351846;chr2R_15350149_15351846;chr2R_15350437_15351846 chr2R_15350285_15351846 chr2R_15351847_15351914;chr2R_15350068_15350148 20.00 37.50 22.22 31.25 28.57 20.00 25.00 23.08 14.29 0.00 40.00 20.00 20.00 25.00 0.00 25.00 28.57 16.67 28.57 5.56 33.33 8.33 0.00 10.00 0.00 10.00 33.33 20.00 0.00 28.57 0.00 NA 12.50 7.69 16.67 22.22 33.33 0.00 20.00 20.00 NA 18.18 42.86 12.50 NA NA 33.33 12.50 10.00 66.67 10.00 14.29 20.00 NA 36.36 NA 25.00 25.00 K intron_retention CG12582 chr3R + chr3R_29885_29934 chr3R_29884_29885;chr3R_29934_29935 chr3R_29816_29884;chr3R_29935_30053 5.99 6.37 7.00 9.06 6.14 7.14 6.85 5.93 6.36 4.76 4.64 3.70 4.44 6.78 6.34 5.05 5.08 4.88 5.37 6.76 6.06 4.56 8.07 6.19 8.84 4.81 11.84 18.58 13.94 3.46 8.41 7.81 4.51 4.98 7.78 11.72 3.28 5.00 6.71 5.55 9.31 6.17 5.42 3.44 4.28 5.93 5.99 5.92 5.25 6.18 6.69 4.42 4.48 7.81 4.56 7.55 4.62 3.60 K intron_retention CG8677 chr2L + chr2L_21228341_21228458 chr2L_21228340_21228341;chr2L_21228458_21228459 chr2L_21226633_21228340;chr2L_21228459_21230037 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Lk6 chr3R - chr3R_7580834_7580898 chr3R_7580833_7580834;chr3R_7580898_7580899 chr3R_7576091_7580833;chr3R_7580899_7581109 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6359,I_chr3R_8454231_8454610 chr3R + chr3R_8454243_8454610 chr3R_8454242_8454243;chr3R_8454610_8454611 chr3R_8454210_8454242;chr3R_8454611_8454706 3.11 2.72 4.13 2.34 2.37 1.92 1.17 3.15 2.31 3.70 2.72 3.26 3.54 3.11 3.35 5.52 3.23 3.43 3.12 3.23 2.91 2.17 2.92 3.38 1.66 3.61 2.85 4.52 1.57 2.03 5.84 4.60 2.33 3.08 3.80 1.25 1.58 2.31 1.96 5.92 3.68 2.92 3.95 4.14 3.98 4.38 2.79 8.90 4.62 3.34 3.02 2.66 2.56 2.13 2.92 3.75 2.85 4.15 K intron_retention CG3476 chr2L + chr2L_7027928_7027987 chr2L_7027927_7027928;chr2L_7027987_7027988 chr2L_7027449_7027927;chr2L_7027988_7028420 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 2.70 0.00 1.02 0.00 8.33 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 K alternative_donor drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389597_9390195;chr2R_9389597_9390151;chr2R_9389597_9389907;chr2R_9389597_9389940;chr2R_9389597_9389751;chr2R_9389597_9390264;chr2R_9389597_9389753;chr2R_9389597_9389757 chr2R_9389597_9390293 chr2R_9389497_9389596;chr2R_9390294_9390295 25.71 15.79 31.71 23.73 41.67 36.67 31.48 35.48 40.96 13.33 43.75 35.00 40.00 33.33 25.71 23.08 42.31 34.29 30.77 48.04 45.16 30.43 20.00 20.83 39.13 27.03 4.76 6.67 25.00 5.56 27.50 33.33 29.17 27.87 5.56 7.69 19.05 23.08 21.74 23.68 33.33 34.25 21.05 5.56 28.57 16.67 5.26 48.00 27.27 6.25 4.76 25.00 23.81 6.67 41.03 5.88 12.50 16.67 K jcn_only_AD CG4199,I_chrX_1962457_1964222 chrX - chrX_1965614_1965872;chrX_1965614_1967409;chrX_1965614_1966582 chrX_1965614_1967149 chrX_1965393_1965613;chrX_1967410_1967460 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.55 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.40 0.51 0.00 0.89 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.73 0.00 0.24 0.50 0.53 0.57 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.44 0.63 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Pitslre,I_chr3L_20764965_20765781,I_chr3L_20764965_20766192,I_chr3L_20764965_20766212 chr3L + chr3L_20764965_20766893;chr3L_20764965_20766215 chr3L_20764965_20765704 chr3L_20764896_20764964;chr3L_20766894_20766993 35.29 28.00 28.57 33.33 36.36 50.00 52.38 26.67 46.34 15.00 23.08 50.00 64.29 47.06 58.33 39.13 58.33 46.67 57.14 33.33 55.56 57.89 38.10 26.19 30.77 63.64 33.33 21.43 40.00 30.00 68.42 41.18 35.29 40.74 26.92 28.57 18.87 17.95 25.58 34.43 35.29 35.90 45.45 50.00 14.29 33.33 26.92 29.73 41.18 22.22 31.11 36.36 29.17 25.00 57.89 25.93 26.32 41.18 K jcn_only_AA CG9153,Myo61F chr3L + chr3L_1316676_1316737 chr3L_1316676_1316734 chr3L_1316385_1316675;chr3L_1316738_1317333 34.92 42.71 29.76 34.39 41.07 27.42 36.88 39.46 35.42 28.26 49.30 41.94 39.80 42.03 35.24 38.32 32.98 38.16 40.20 33.33 42.03 30.14 32.50 28.57 32.58 39.76 32.61 17.31 35.71 44.21 30.58 26.09 33.33 39.58 35.48 32.97 37.50 37.04 40.00 34.92 34.88 35.98 45.71 36.80 39.34 32.94 36.15 23.68 33.33 32.68 30.07 33.80 31.58 31.82 36.36 23.36 33.33 29.63 K intron_retention CG17273 chr3R - chr3R_16651291_16651354 chr3R_16651290_16651291;chr3R_16651354_16651355 chr3R_16650370_16651290;chr3R_16651355_16651715 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.34 0.44 0.00 0.00 0.00 0.86 1.45 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD PhKgamma,I_chrX_11590179_11590249,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11590179_11590435;chrX_11589973_11590435 chrX_11590345_11590435 chrX_11590436_11590535;chrX_11589857_11589972 37.50 21.74 NA NA NA NA NA 14.29 27.78 50.00 NA 33.33 NA NA NA NA NA NA NA 42.31 NA 60.87 31.03 31.58 40.91 NA 48.00 37.50 48.00 NA NA NA NA NA NA NA 25.93 21.43 44.00 40.00 NA 12.82 NA 60.87 NA 40.91 NA 50.00 NA 20.69 43.75 31.82 NA NA NA 36.36 NA NA K alternative_acceptor CG32163 chr3L + chr3L_16580348_16580609 chr3L_16580348_16580505 chr3L_16580335_16580347;chr3L_16580610_16580996 76.69 66.67 65.00 85.71 81.82 71.43 72.00 81.82 78.79 66.67 63.64 87.88 92.31 93.75 68.75 82.93 83.33 73.33 66.67 88.00 91.67 75.00 73.33 78.95 83.33 90.91 82.35 NA 88.89 70.00 80.95 50.00 87.50 80.00 NA NA 84.62 66.67 68.75 72.22 66.67 72.00 92.31 80.00 76.92 80.00 78.95 71.43 74.29 47.06 75.00 66.67 56.25 84.62 80.95 76.47 74.07 69.57 K intron_retention TepIV,EI_chr2L_19548696_19549582 chr2L + chr2L_19548696_19549582 chr2L_19548695_19548696;chr2L_19549582_19549583 chr2L_19548596_19548695;chr2L_19549583_19549682 20.00 NA NA 20.00 NA NA 37.50 NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA K jcn_only_AA Elongin-B,RI_chr3R_16404530_16404635 chr3R - chr3R_16404515_16404635 chr3R_16404530_16404635 chr3R_16404636_16404735;chr3R_16404430_16404514 1.60 1.37 1.57 2.29 2.27 1.41 2.07 2.40 2.58 3.23 2.67 0.73 1.97 1.46 0.39 3.03 1.08 1.03 1.60 1.51 0.00 1.03 1.43 1.45 3.02 1.79 0.81 2.62 2.39 1.37 0.95 2.01 1.67 1.41 1.66 3.05 0.98 1.82 0.50 0.86 4.89 1.43 3.42 1.94 2.00 1.37 1.74 1.36 1.92 2.51 0.42 2.24 0.33 1.05 1.85 1.21 2.22 1.37 K alternative_donor nes chr3L - chr3L_19253331_19253632;chr3L_19253331_19253609;chr3L_19253331_19253676;chr3L_19253331_19253648;chr3L_19253331_19253745;chr3L_19253331_19253764 chr3L_19253331_19253636 chr3L_19253215_19253330;chr3L_19253765_19253779 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Pcf11,RI_chr2R_10753287_10754988 chr2R - chr2R_10753272_10754988;chr2R_10753287_10754988;chr2R_10753581_10754988;chr2R_10753239_10754988 chr2R_10753557_10754988 chr2R_10754989_10755088;chr2R_10753187_10753238 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.35 0.00 NA 0.00 NA 0.00 1.75 NA 3.12 0.00 3.45 NA 5.00 0.00 0.00 4.17 NA 0.00 NA 3.57 0.00 NA NA 3.64 0.00 0.00 0.00 NA 0.00 NA 2.38 NA 0.00 0.00 3.70 0.00 NA 4.76 NA NA NA 0.00 NA NA NA K alternative_donor mdy,I_chr2L_16825519_16825593 chr2L + chr2L_16816720_16820111 chr2L_16816793_16820111 chr2L_16820112_16820475;chr2L_16816700_16816719 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG1578,RI_chrX_11709573_11709680,I_chrX_11709573_11710263,RI_chrX_11709573_11710335,noncoding_23225,I_chrX_11710380_11710454 chrX - chrX_11709573_11709680;chrX_11709573_11710458;chrX_11709573_11710335;chrX_11709573_11710263 chrX_11709573_11710454 chrX_11709473_11709572;chrX_11710459_11710479 70.00 NA NA NA NA NA NA NA 70.00 NA NA 64.29 NA NA NA NA NA NA NA 83.33 NA NA 75.86 75.86 NA NA NA NA NA NA 66.67 NA NA NA NA NA 91.43 NA 85.71 66.67 NA 55.56 NA 85.19 NA NA NA 62.50 66.67 NA NA NA NA NA 58.06 NA 80.00 NA K intron_retention Scamp,I_chrX_15342614_15342891,I_chrX_15343542_15343655 chrX - chrX_15342614_15343313 chrX_15342613_15342614;chrX_15343313_15343314 chrX_15342514_15342613;chrX_15343314_15343541 2.99 0.00 2.99 9.23 0.00 6.52 5.77 3.17 4.07 1.27 4.00 1.79 0.00 2.56 6.56 10.26 8.33 0.00 5.26 5.13 6.00 0.67 0.81 3.33 3.33 6.78 3.49 1.18 2.60 0.00 5.45 2.33 2.99 6.19 0.00 1.09 0.00 0.00 1.53 1.10 0.00 5.88 5.56 0.00 1.23 3.96 2.38 0.00 2.80 4.17 3.81 0.00 2.20 0.00 5.08 6.58 4.49 5.97 K jcn_only_AA CG5059,I_chr3L_20508909_20508960,I_chr3L_20509233_20511440 chr3L - chr3L_20508721_20508824 chr3L_20508724_20508824 chr3L_20508825_20508886;chr3L_20508544_20508720 90.35 85.19 88.24 92.52 88.78 86.09 91.55 88.24 90.21 84.42 86.11 91.91 91.73 92.38 87.02 90.91 90.82 90.35 86.92 89.91 89.41 90.79 85.22 92.48 85.48 87.97 88.74 100.00 87.50 87.95 90.10 91.01 94.51 91.82 96.55 91.03 88.54 86.96 93.33 88.76 95.06 89.42 86.00 86.71 92.45 92.44 92.79 81.82 92.08 91.58 88.70 95.52 92.19 96.43 91.87 90.91 87.65 90.77 K jcn_only_AD Dscam,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3249373_3250528;chr2R_3249373_3251682;chr2R_3249373_3254309;chr2R_3249373_3252522;chr2R_3249373_3252236;chr2R_3249373_3252816;chr2R_3249373_3253970;chr2R_3249373_3250836;chr2R_3249373_3251960;chr2R_3249373_3251099 chr2R_3249373_3253447 chr2R_3249273_3249372 4.62 10.71 8.51 1.56 4.00 3.23 5.00 3.45 6.10 0.00 NA 2.94 10.81 8.82 4.88 3.77 19.44 6.45 22.86 7.78 8.00 5.00 2.86 5.56 6.38 16.00 10.81 0.00 1.79 3.53 5.88 0.00 3.75 5.45 9.68 7.14 5.45 2.63 0.00 4.49 3.45 4.62 3.12 3.45 9.09 0.00 0.00 6.98 2.99 NA 4.44 0.00 12.90 NA 11.54 0.00 NA 4.35 K intron_retention ZnT63C chr3L + chr3L_3312750_3312814 chr3L_3312749_3312750;chr3L_3312814_3312815 chr3L_3312515_3312749;chr3L_3312815_3313480 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Treh,I_chr2R_16972565_16972702,I_chr2R_16975359_16975442,RI_chr2R_16975359_16975842,I_chr2R_16975364_16975842 chr2R + chr2R_16975364_16975442 chr2R_16975363_16975364;chr2R_16975442_16975443 chr2R_16975286_16975363;chr2R_16975443_16975450 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.34 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rab5,I_chr2L_2361586_2364794 chr2L - chr2L_2361093_2361159 chr2L_2361092_2361093;chr2L_2361159_2361160 chr2L_2360972_2361092;chr2L_2361160_2361585 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Nurf-38 chr2R - chr2R_20447088_20447145 chr2R_20447104_20447145 chr2R_20447146_20447297;chr2R_20446978_20447087 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.88 0.41 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.83 2.05 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.76 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.61 0.00 0.17 0.00 K intron_retention CG2852,noncoding_8670,I_chr2R_18533040_18533151,I_chr2R_18533040_18533181 chr2R - chr2R_18533040_18533425 chr2R_18533039_18533040;chr2R_18533425_18533426 chr2R_18532940_18533039;chr2R_18533426_18533550 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.10 0.27 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention CG42574,I_chr3R_618802_618939,I_chr3R_621543_625413,I_chr3R_621546_625413 chr3R - chr3R_620787_625413 chr3R_620786_620787;chr3R_625413_625414 chr3R_618940_620786;chr3R_625414_625513 0.00 0.00 0.00 7.69 0.00 0.00 4.17 4.17 1.41 0.00 0.00 3.12 0.00 0.00 0.00 10.71 0.00 0.00 0.00 0.00 0.00 5.88 1.12 2.94 0.00 0.00 0.00 8.86 0.00 0.00 2.50 NA 0.00 0.00 0.00 0.00 0.00 0.00 1.56 1.92 0.00 3.12 0.00 0.00 NA 0.00 0.00 1.92 2.04 0.00 0.00 7.69 0.00 NA 0.00 NA NA NA K intron_retention noncoding_4282,RI_chr2L_22131700_22140718 chr2L + chr2L_22131700_22132232 chr2L_22131699_22131700;chr2L_22132232_22132233 chr2L_22131600_22131699;chr2L_22132233_22132382 93.65 89.19 96.77 93.55 95.24 96.15 95.59 94.03 98.61 68.18 92.31 94.20 100.00 96.67 89.47 94.94 96.55 85.71 90.48 97.40 84.62 NA 97.67 91.11 92.31 95.45 89.47 93.33 100.00 93.33 89.19 86.67 100.00 93.10 93.33 96.15 95.24 92.31 97.14 93.55 100.00 98.08 96.67 92.86 87.50 94.29 91.11 100.00 93.75 88.89 91.43 97.22 91.30 87.80 92.31 94.87 90.91 94.74 K intron_retention simj,I_chr3L_10680263_10680313 chr3L + chr3L_10680440_10680504 chr3L_10680439_10680440;chr3L_10680504_10680505 chr3L_10680338_10680439;chr3L_10680505_10680703 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.64 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31601,RI_chr2L_22041689_22041995 chr2L - chr2L_22041689_22042106 chr2L_22041688_22041689;chr2L_22042106_22042107 chr2L_22041589_22041688;chr2L_22042107_22042347 0.00 0.00 0.00 2.21 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 1.14 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention wgn chrX - chrX_18519098_18519670 chrX_18519097_18519098;chrX_18519670_18519671 chrX_18518767_18519097;chrX_18519671_18519850 0.00 0.00 0.00 3.28 0.00 0.00 1.85 0.00 0.78 0.00 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 3.62 0.00 3.45 1.40 2.04 1.82 3.28 1.16 4.00 1.52 0.00 3.92 0.00 1.63 0.00 1.54 1.41 1.25 1.10 0.00 2.13 3.45 0.00 0.00 0.00 0.68 0.00 0.00 0.00 1.80 1.94 2.68 0.00 0.00 1.00 0.00 0.00 1.03 1.67 K intron_retention mRpL16 chrX + chrX_1784577_1784645 chrX_1784576_1784577;chrX_1784645_1784646 chrX_1784511_1784576;chrX_1784646_1785423 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 4.60 0.00 0.00 4.88 3.92 0.00 0.00 0.00 4.21 0.00 2.44 2.60 2.82 3.33 0.00 3.70 2.33 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 1.85 0.00 2.56 1.09 0.00 3.92 2.78 1.80 2.30 0.00 2.63 2.60 0.00 0.00 0.00 0.00 0.00 1.35 0.00 1.15 K alternative_acceptor Ptp99A,I_chr3R_25302126_25302175 chr3R + chr3R_25302126_25307191 chr3R_25302126_25307188 chr3R_25302026_25302125;chr3R_25307192_25307198 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor Unr,DMG4-MB6.chr3L.15.021 chr3L - chr3L_8429790_8429864 chr3L_8429811_8429864 chr3L_8429865_8430072;chr3L_8429346_8429789 89.19 88.89 91.84 98.57 97.62 90.48 89.47 93.94 91.92 77.78 97.06 90.82 93.02 84.21 92.06 93.22 91.67 95.24 90.70 89.00 94.74 89.19 89.47 81.82 80.00 90.00 89.06 96.67 78.12 80.56 88.89 83.33 96.97 90.41 86.54 88.33 89.47 95.24 88.89 84.31 80.95 91.30 85.71 84.78 80.00 86.67 93.18 81.48 91.57 94.12 89.16 82.93 77.78 84.00 93.33 86.96 80.95 69.23 K jcn_only_AA dnc,I_chrX_3150245_3150319,I_chrX_3150351_3152643 chrX + chrX_3150245_3152646;chrX_3150245_3150319 chrX_3150245_3152643 chrX_3150235_3150244;chrX_3152647_3152733 67.20 NA 69.70 50.00 NA 52.00 57.69 67.74 NA NA NA 61.54 50.00 NA 69.70 61.54 NA NA 80.77 66.67 NA NA NA NA NA NA NA NA NA NA 76.00 NA NA 76.92 NA NA NA NA NA NA NA 80.39 NA NA NA NA NA NA 72.73 NA NA NA NA NA 63.64 NA NA NA K cassette Ef1alpha100E,I_chr3R_27565587_27567348,I_chr3R_27573809_27574675 chr3R + chr3R_27565587_27567348 chr3R_27565587_27566041;chr3R_27566892_27567348 chr3R_27566042_27566891 chr3R_27565573_27565586;chr3R_27567349_27567448 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 80.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 66.67 100.00 NA 66.67 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 83.33 66.67 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 75.00 75.00 100.00 100.00 66.67 NA 100.00 NA 100.00 100.00 100.00 100.00 K jcn_only_AA CG9740,RI_chr3R_5083859_5083977,I_chr3R_5083907_5083977 chr3R - chr3R_5083907_5083977;chr3R_5083859_5083977 chr3R_5083911_5083977 chr3R_5083978_5084077;chr3R_5083807_5083858 98.11 100.00 97.50 97.87 95.45 96.67 93.02 100.00 98.80 97.14 96.00 98.59 100.00 97.73 97.83 98.11 100.00 96.77 100.00 97.73 97.83 97.62 98.41 100.00 93.33 100.00 100.00 100.00 100.00 96.97 96.88 91.89 97.73 100.00 100.00 97.62 96.55 98.18 98.86 96.92 97.50 100.00 96.30 100.00 97.44 98.36 96.49 100.00 98.92 98.81 98.59 96.97 97.73 98.15 100.00 98.55 97.33 98.15 K intron_retention CG12576,RI_chrX_21878289_21882347,I_chrX_21882735_21883714 chrX - chrX_21879320_21882347 chrX_21879319_21879320;chrX_21882347_21882348 chrX_21879015_21879319;chrX_21882348_21882447 0.00 0.00 0.00 1.27 0.00 0.00 4.55 0.00 3.45 0.00 0.00 2.63 3.64 1.69 0.00 0.00 0.00 0.00 0.00 0.97 0.00 6.78 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.73 0.00 0.93 2.00 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 K alternative_donor CG1970,RI_chr4_589928_590587,I_chr4_590970_591030 chr4 - chr4_589928_590600 chr4_589928_590587 chr4_589828_589927;chr4_590601_590687 0.00 1.12 0.00 2.86 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.72 1.46 0.00 2.86 1.37 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.55 0.00 0.00 0.80 0.00 3.45 0.00 0.00 0.00 0.79 0.00 1.13 0.00 1.49 0.00 0.00 0.00 0.98 0.41 1.39 2.20 0.00 0.00 1.82 0.65 0.00 3.09 0.00 K jcn_only_AD CG10277,I_chr3R_2208983_2210253,I_chr3R_2211939_2212057 chr3R + chr3R_2209240_2210702;chr3R_2209244_2210702 chr3R_2208983_2210702 chr3R_2210703_2210980;chr3R_2208883_2208982 97.37 100.00 99.02 96.57 100.00 98.86 96.55 99.56 96.37 99.15 100.00 95.94 100.00 95.79 98.02 98.20 98.36 97.06 98.10 96.15 98.85 93.64 95.80 95.95 97.59 97.30 97.71 92.55 90.27 97.50 98.46 99.22 98.59 95.62 96.38 93.49 96.73 NA 99.51 97.44 96.89 95.22 100.00 95.59 93.18 96.26 95.72 97.78 96.51 98.57 96.43 96.61 95.83 98.46 98.08 96.77 98.92 98.56 K alternative_donor CG3558,RI_chr2L_2995071_2997790 chr2L + chr2L_2993464_2993544;chr2L_2993410_2993544;chr2L_2993378_2993544 chr2L_2993444_2993544 chr2L_2993545_2994408;chr2L_2993028_2993377 2.10 0.00 3.85 2.44 0.00 2.44 2.00 2.78 1.68 3.33 2.38 1.19 1.89 1.82 2.04 1.10 2.17 5.13 0.00 2.97 2.78 2.99 4.00 2.38 0.00 3.70 5.41 0.00 5.26 1.43 2.04 4.00 1.16 0.92 0.00 2.38 2.86 6.25 2.86 1.01 1.64 6.19 2.56 3.08 2.50 1.27 0.00 0.76 0.97 0.00 2.33 0.00 3.57 NA 1.69 0.00 0.00 2.48 K intron_retention shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9755855_9757364 chr2R_9755854_9755855;chr2R_9757364_9757365 chr2R_9755661_9755854;chr2R_9757365_9757464 0.00 0.00 0.99 0.00 0.00 0.56 0.00 0.76 0.51 0.00 0.00 0.60 0.00 0.56 0.91 0.95 1.19 0.00 0.00 0.00 0.00 0.34 0.00 0.82 0.00 0.00 0.00 1.90 0.00 0.00 0.00 0.55 0.00 0.30 0.00 0.00 0.43 0.85 0.85 0.00 0.00 0.45 1.22 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.70 2.11 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG34394,I_chr2L_3365674_3365965 chr2L - chr2L_3368195_3372778 chr2L_3368194_3368195;chr2L_3372778_3372779 chr2L_3368057_3368194;chr2L_3372779_3372820 8.89 14.29 12.50 10.81 17.65 20.00 15.79 16.13 8.89 0.00 6.25 17.14 0.00 23.08 9.52 19.23 5.00 NA 12.50 4.88 9.09 30.30 7.69 0.00 0.00 5.00 0.00 20.00 NA 4.35 9.09 NA 4.17 11.54 NA 11.76 3.85 0.00 0.00 2.70 NA 13.33 NA 8.33 NA NA 7.14 0.00 11.76 NA 14.29 7.14 NA NA 4.55 NA NA NA K intron_retention faf,RI_chr3R_27603474_27603893,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27612021_27612079 chr3R_27612020_27612021;chr3R_27612079_27612080 chr3R_27611911_27612020;chr3R_27612080_27612431 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 5.00 2.63 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 K alternative_donor CG11248 chr3L + chr3L_21673333_21673399;chr3L_21673253_21673399 chr3L_21673324_21673399 chr3L_21673400_21675533;chr3L_21673237_21673252 41.43 NA NA NA NA NA NA 42.86 42.86 NA NA 20.00 NA NA NA 33.33 NA NA NA 66.67 NA NA NA NA NA 60.00 28.57 NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD E_chr4_592469_594231,Ephrin,I_chr4_595055_597604,RI_chr4_596272_596341 chr4 + chr4_592737_594238;chr4_592646_594238;chr4_592490_594238;chr4_592593_594238;chr4_592469_594238;chr4_592798_594238 chr4_592410_594238 chr4_594239_594331;chr4_592404_592409 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.23 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 NA NA 1.27 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA 1.20 NA 0.00 0.00 NA NA 0.00 NA NA NA K jcn_only_AA CG3797,I_chr3L_19054399_19054486 chr3L - chr3L_19054399_19054486 chr3L_19054431_19054486 chr3L_19054487_19054586;chr3L_19054299_19054398 100.00 100.00 100.00 98.80 100.00 100.00 100.00 97.59 98.78 95.45 97.56 98.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 NA 96.43 100.00 100.00 100.00 100.00 98.36 100.00 98.88 NA 97.62 100.00 98.25 NA 92.73 98.31 100.00 98.51 97.73 100.00 98.11 100.00 95.24 100.00 98.11 96.97 NA K intron_retention TM9SF4,I_chr2L_13774105_13774160 chr2L + chr2L_13772869_13772932 chr2L_13772868_13772869;chr2L_13772932_13772933 chr2L_13772641_13772868;chr2L_13772933_13773111 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Karybeta3,I_chr3R_476219_476306 chr3R + chr3R_479059_479173 chr3R_479058_479059;chr3R_479173_479174 chr3R_477705_479058;chr3R_479174_480370 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5987603_5991760,I_chr2R_5988662_5991760,I_chr2R_5988666_5991760,I_chr2R_5988919_5991760,I_chr2R_5988931_5991760,I_chr2R_5990647_5991760,I_chr2R_5991249_5991760,I_chr2R_5991689_5991760,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5987244_5991764 chr2R_5987356_5991764 chr2R_5991765_5991860;chr2R_5987238_5987243 100.00 100.00 100.00 99.23 100.00 98.21 99.29 99.35 100.00 100.00 98.04 99.23 100.00 100.00 100.00 100.00 100.00 98.15 98.89 99.35 98.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 99.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG11975 chr3R + chr3R_4819345_4819420 chr3R_4819344_4819345;chr3R_4819420_4819421 chr3R_4819258_4819344;chr3R_4819421_4820182 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.38 0.00 0.00 0.00 0.00 2.00 3.85 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 K alternative_donor Pros35,I_chr2L_10222136_10222201,I_chr2L_10222136_10222259,CG4908 chr2L + chr2L_10222136_10222201 chr2L_10222144_10222201 chr2L_10222202_10222270;chr2L_10222075_10222135 99.19 99.51 98.73 98.85 98.73 99.07 99.57 98.58 99.73 98.11 100.00 99.16 99.20 98.44 98.74 98.93 99.22 99.19 96.99 99.16 99.28 99.32 98.15 99.56 99.22 99.24 99.47 99.33 99.42 99.50 98.54 98.31 100.00 99.50 99.20 98.68 98.61 98.00 99.62 99.52 99.52 98.53 96.40 97.84 98.68 98.97 99.21 100.00 99.51 98.17 99.47 97.81 98.82 98.03 99.30 99.57 99.34 98.84 K alternative_acceptor CG8029,I_chr2R_5095165_5095256 chr2R + chr2R_5095165_5095256 chr2R_5095165_5095252 chr2R_5095083_5095164;chr2R_5095257_5095264 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 98.89 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 98.31 97.96 100.00 100.00 100.00 100.00 96.88 98.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 98.39 100.00 100.00 100.00 K alternative_acceptor gcl,I_chr2R_4614277_4614332 chr2R + chr2R_4615283_4615355 chr2R_4615283_4615352 chr2R_4615214_4615282;chr2R_4615356_4615420 93.33 NA 90.00 93.33 100.00 88.89 90.91 100.00 100.00 NA 88.89 100.00 75.00 100.00 92.31 93.33 85.71 100.00 90.00 95.45 NA NA 100.00 100.00 NA 100.00 92.31 NA NA 87.50 100.00 NA 88.89 92.31 100.00 100.00 93.75 NA 92.86 95.00 NA 100.00 NA 90.00 100.00 88.89 100.00 88.89 93.33 NA 92.31 NA 100.00 90.91 91.67 NA 100.00 94.74 K intron_retention CG6995 chr3R + chr3R_20646969_20647021 chr3R_20646968_20646969;chr3R_20647021_20647022 chr3R_20646819_20646968;chr3R_20647022_20647447 1.89 0.00 0.00 3.45 2.00 0.00 0.00 2.11 4.00 5.71 0.00 4.35 2.17 0.00 3.33 0.00 2.56 0.00 0.00 1.64 1.75 0.00 5.00 0.98 1.89 1.79 3.66 9.80 5.08 2.78 0.00 1.52 4.76 0.00 0.00 0.00 5.32 1.27 1.06 4.95 1.59 2.36 0.00 5.41 0.00 2.25 2.80 4.94 2.73 2.13 2.06 0.00 5.48 2.50 0.00 0.00 0.00 4.65 K intron_retention CG11737 chr3R + chr3R_4346691_4346750 chr3R_4346690_4346691;chr3R_4346750_4346751 chr3R_4346524_4346690;chr3R_4346751_4347103 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 NA 2.33 0.00 0.00 0.00 20.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 NA 3.57 0.00 0.00 7.41 0.00 10.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 K jcn_only_AD endos,I_chr3L_14024099_14024488,I_chr3L_14024103_14024158,I_chr3L_14024103_14024546,noncoding_12505,I_chr3L_14024496_14024546 chr3L - chr3L_14024103_14024488;chr3L_14024103_14024546;chr3L_14024103_14024158 chr3L_14024103_14024407 chr3L_14024003_14024102;chr3L_14024547_14024588 0.60 0.00 0.00 1.31 1.52 0.75 1.13 0.00 0.89 0.76 0.00 0.00 0.00 0.00 0.93 1.18 0.00 0.64 0.56 0.00 0.00 0.00 1.42 0.54 2.63 0.00 0.53 1.65 1.48 0.00 2.31 0.60 0.50 0.00 0.00 0.00 0.76 1.89 1.35 0.00 0.73 0.33 0.00 0.00 0.86 0.85 0.81 0.00 0.70 1.83 0.82 0.00 1.00 0.00 0.00 2.68 0.64 0.70 K alternative_last_exon hts,RI_chr2R_15294446_15295345,I_chr2R_15294825_15295345,I_chr2R_15295410_15295479,I_chr2R_15311185_15312327,I_chr2R_15311303_15312026 chr2R - chr2R_15294825_15295345;chr2R_15293594_15295345;chr2R_15288861_15295345;chr2R_15286599_15295345 chr2R_15294662_15295345 chr2R_15293525_15293593;chr2R_15287023_15288860;chr2R_15286527_15286598 chr2R_15294405_15294661 chr2R_15295346_15295409 1.28 1.39 1.12 7.21 0.00 0.00 4.11 3.82 2.00 0.00 2.13 1.87 3.12 2.50 1.16 5.43 1.69 1.32 1.32 1.65 0.00 0.00 1.02 0.00 1.69 1.27 1.10 0.00 0.00 1.75 1.00 0.00 1.30 3.10 1.72 1.30 0.00 0.00 0.00 0.53 0.00 1.19 4.48 1.85 0.00 0.85 0.00 0.00 2.21 0.00 1.71 1.61 1.41 1.64 0.79 1.28 1.79 0.87 K alternative_last_exon CG3566 chrX - chrX_6169204_6170260 chrX_6169424_6170260 chrX_6169003_6169203 chrX_6169263_6169423 chrX_6170261_6170329 10.94 5.00 10.71 15.79 2.86 7.50 21.21 10.00 10.39 20.83 13.33 30.19 17.24 16.22 5.56 9.52 15.38 15.62 11.76 6.90 8.57 14.81 9.62 8.16 25.00 15.38 17.24 16.67 30.00 15.62 10.94 13.46 5.88 10.17 9.38 15.38 7.41 15.38 5.80 13.70 14.63 7.14 5.71 9.38 8.86 15.00 6.76 18.18 12.31 11.36 14.63 3.03 5.66 5.71 8.77 7.79 4.11 12.31 K intron_retention RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522912_523194 chrX_522911_522912;chrX_523194_523195 chrX_522849_522911;chrX_523195_523469 95.24 95.24 88.89 94.12 100.00 100.00 99.02 94.44 95.45 100.00 NA 100.00 100.00 100.00 90.00 94.44 88.89 100.00 NA 94.64 NA 88.37 94.74 100.00 100.00 92.31 94.44 94.12 93.75 88.89 NA 95.45 NA 100.00 90.00 100.00 94.12 90.48 97.14 96.00 96.00 96.67 77.78 90.91 78.95 100.00 100.00 100.00 95.65 90.48 88.89 95.24 100.00 88.89 NA 87.50 87.50 100.00 K intron_retention CG10743 chr3L + chr3L_13506498_13506581 chr3L_13506497_13506498;chr3L_13506581_13506582 chr3L_13506449_13506497;chr3L_13506582_13506892 100.00 100.00 100.00 98.46 100.00 100.00 100.00 100.00 96.10 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.78 94.44 96.43 100.00 97.92 100.00 100.00 100.00 97.67 100.00 100.00 98.21 96.15 97.37 100.00 100.00 100.00 100.00 100.00 100.00 98.41 100.00 98.81 100.00 97.96 96.43 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette chinmo chr2L + chr2L_1653836_1690116 chr2L_1653836_1678868;chr2L_1678921_1690116 chr2L_1678869_1678920 chr2L_1653818_1653835;chr2L_1690117_1690755 31.25 NA NA 20.83 NA NA 22.73 20.00 47.62 NA NA 26.09 31.25 NA 30.00 50.00 NA NA NA 47.06 NA NA 55.56 NA NA 55.56 NA NA NA NA NA NA NA 28.00 NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA 37.50 NA NA NA NA NA 27.27 NA NA NA K alternative_acceptor CG10263,I_chr2L_19581286_19581348 chr2L - chr2L_19581877_19582006 chr2L_19581904_19582006 chr2L_19582007_19582041;chr2L_19581776_19581876 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 2.56 0.00 0.95 0.00 0.00 1.10 1.23 0.00 0.00 1.47 4.05 0.00 1.56 0.00 2.00 1.41 0.00 0.00 0.00 1.98 0.00 2.42 1.14 0.00 1.02 0.00 0.00 1.28 0.00 1.32 1.67 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 K jcn_only_AD loco,I_chr3R_18448629_18449211,I_chr3R_18456329_18462522 chr3R - chr3R_18446578_18446672 chr3R_18446578_18446644 chr3R_18446509_18446577;chr3R_18446673_18446737 94.06 96.10 94.29 98.98 96.97 88.16 90.99 96.12 94.78 94.64 95.83 97.04 97.83 94.34 97.40 94.67 90.57 95.71 91.14 95.90 93.55 93.80 89.38 90.65 90.91 95.60 88.60 93.39 91.06 92.86 93.18 92.31 91.87 96.15 95.59 93.51 92.86 91.26 94.26 95.68 95.45 96.09 91.78 92.08 95.78 94.06 97.26 95.19 94.07 87.11 90.60 91.18 88.71 92.42 94.12 89.89 89.32 98.23 K intron_retention Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21124522_21125316 chr2L_21124521_21124522;chr2L_21125316_21125317 chr2L_21124443_21124521;chr2L_21125317_21125329 4.55 0.00 0.00 15.79 0.00 NA 6.25 8.33 6.98 NA 25.00 3.23 9.52 12.00 0.00 0.00 NA NA 0.00 0.00 NA 4.35 8.00 10.53 5.56 10.71 9.09 9.09 0.00 9.09 0.00 NA 0.00 0.00 NA 7.41 4.76 0.00 6.90 4.17 NA 0.00 NA 6.67 NA 14.29 0.00 0.00 3.23 NA 6.67 NA NA NA 0.00 NA NA NA K alternative_last_exon noncoding_16269,I_chr3R_8192634_8193249,GstD1 chr3R - chr3R_8192634_8194924 chr3R_8194298_8194924,chr3R_8194316_8194924 chr3R_8191413_8192633 chr3R_8193539_8194297 chr3R_8194925_8194962 97.10 96.06 97.22 82.28 97.00 97.64 97.01 94.32 97.86 98.42 97.74 97.86 94.64 97.98 98.65 95.53 98.03 96.49 96.84 96.72 98.08 93.74 92.63 95.16 97.30 95.83 92.73 90.61 98.38 96.39 98.14 98.56 98.16 96.01 93.05 95.86 96.48 96.64 97.91 97.49 97.31 98.05 97.10 94.28 97.81 98.55 94.51 99.21 98.61 95.59 93.23 97.46 98.17 96.11 98.00 96.74 99.06 98.76 K alternative_donor Cyp9f2,RI_chr3R_8230559_8231431 chr3R - chr3R_8230612_8231431 chr3R_8230612_8231424 chr3R_8230460_8230611;chr3R_8231432_8231531 100.00 NA 100.00 NA NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA NA NA NA 100.00 NA NA NA 87.50 NA NA 100.00 NA NA 100.00 NA NA 100.00 NA 91.67 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K alternative_donor CG9932,I_chr2L_13025498_13027193,I_chr2L_13031395_13035824 chr2L - chr2L_13025498_13026528;chr2L_13025498_13027065 chr2L_13025498_13027344 chr2L_13025398_13025497;chr2L_13027345_13027744 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG17490 chr2L + chr2L_22431120_22432684;chr2L_22431088_22432684;chr2L_22431301_22432684 chr2L_22431020_22432684 chr2L_22432685_22433056;chr2L_22431014_22431019 1.75 4.76 0.00 3.57 5.00 0.00 0.00 12.50 1.75 0.00 4.76 4.26 0.00 3.70 9.68 1.23 4.00 0.00 0.00 2.04 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 5.88 1.96 0.00 0.00 1.85 7.14 0.00 0.00 0.00 6.67 0.00 0.00 8.16 7.41 0.00 0.00 4.35 4.76 5.56 1.69 4.55 3.85 5.00 5.26 0.00 2.63 0.00 4.00 3.33 K alternative_last_exon I_chr3R_17177101_17200781,mod(mdg4),RI_chr3R_17183087_17183726,I_chr3R_17183481_17200781 chr3R - chr3R_17183087_17183726 chr3R_17183481_17183726 chr3R_17182777_17183086 chr3R_17183198_17183480 chr3R_17183727_17183826 97.70 100.00 95.35 91.07 100.00 100.00 85.00 100.00 96.43 100.00 91.67 96.10 94.12 96.67 96.15 100.00 100.00 100.00 96.88 97.03 93.55 94.74 96.59 98.70 86.79 90.00 96.08 97.44 96.88 98.51 100.00 98.41 98.28 98.25 100.00 86.79 98.04 98.63 98.08 98.88 95.35 97.70 100.00 98.00 97.65 97.70 95.00 100.00 97.01 98.53 96.47 97.37 98.11 100.00 100.00 97.73 97.26 98.80 K alternative_acceptor CG5455,I_chr3R_22287369_22288750 chr3R + chr3R_22292793_22292859;chr3R_22292793_22292855 chr3R_22292793_22292853 chr3R_22292336_22292792;chr3R_22292860_22293068 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 NA 100.00 100.00 100.00 100.00 95.00 93.33 100.00 100.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG8878 chr2R - chr2R_8037645_8038415 chr2R_8037644_8037645;chr2R_8038415_8038416 chr2R_8037556_8037644;chr2R_8038416_8038531 0.00 NA NA 0.00 NA NA 0.00 0.00 3.23 NA NA 0.00 7.69 0.00 0.00 8.82 NA NA 0.00 8.33 NA 7.14 5.56 NA NA NA NA NA 5.88 4.35 0.00 NA 0.00 4.35 0.00 0.00 NA NA NA 7.69 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA NA NA 0.00 NA NA NA NA NA N jcn_only_AD I_chrX_4000307_4003527,CG4857 chrX + chrX_4011929_4011996;chrX_4011315_4011996;chrX_4011429_4011996 chrX_4011270_4011996 chrX_4011997_4012308;chrX_4011093_4011269 16.95 29.17 20.00 17.39 27.59 11.54 6.82 40.38 21.25 28.00 27.27 26.32 18.18 28.00 25.00 17.24 16.67 20.00 28.00 18.75 NA 23.81 10.53 10.81 9.68 23.53 25.71 6.67 0.00 16.95 4.55 5.00 14.55 28.57 9.68 27.50 16.67 14.29 25.00 10.28 4.76 15.94 13.89 17.65 8.33 21.21 11.11 4.00 12.82 19.23 15.09 33.33 NA 3.70 5.77 20.00 6.67 14.81 K intron_retention bsk,I_chr2L_10249260_10249729,RI_chr2L_10249260_10249855,RI_chr2L_10249260_10249931,I_chr2L_10249260_10250021,RI_chr2L_10249260_10250123 chr2L - chr2L_10249260_10250280 chr2L_10249259_10249260;chr2L_10250280_10250281 chr2L_10249160_10249259;chr2L_10250281_10250501 4.60 5.41 0.00 2.22 9.09 5.41 6.10 3.10 6.54 NA 0.00 12.16 1.72 0.00 2.63 3.81 4.44 5.88 3.45 7.94 6.90 NA 6.67 6.67 0.00 2.70 4.88 0.00 0.00 0.00 5.26 10.00 0.00 3.88 7.14 0.00 4.76 4.35 0.00 2.70 5.56 4.60 5.41 0.00 7.14 0.00 0.00 0.00 5.49 6.67 8.57 7.69 14.29 0.00 2.04 8.00 5.13 6.90 K intron_retention CG6845,I_chr3L_148414_148465,I_chr3L_148414_148475,I_chr3L_148414_148489 chr3L + chr3L_147083_147729 chr3L_147082_147083;chr3L_147729_147730 chr3L_146772_147082;chr3L_147730_147883 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 96.15 98.11 100.00 96.88 95.24 94.44 92.31 100.00 95.00 100.00 90.00 100.00 96.15 100.00 100.00 97.67 100.00 100.00 100.00 95.00 100.00 97.78 95.45 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG5068 chr3L + chr3L_8980059_8980126 chr3L_8980070_8980126 chr3L_8980127_8980325;chr3L_8979812_8980058 0.00 0.00 0.00 0.00 1.85 1.92 0.00 1.43 1.03 2.00 2.00 0.88 0.00 2.27 0.00 2.74 0.00 0.00 2.27 0.00 0.00 0.00 1.40 1.65 1.25 0.00 0.00 2.70 1.43 0.00 5.36 0.00 0.00 0.00 1.19 1.01 1.68 0.00 0.00 1.35 0.00 0.92 1.89 0.00 1.64 0.00 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.83 0.00 0.00 K intron_retention CG10462 chr2L - chr2L_19733337_19733395 chr2L_19733336_19733337;chr2L_19733395_19733396 chr2L_19733163_19733336;chr2L_19733396_19733458 95.00 91.30 92.59 97.53 97.06 88.57 95.12 88.07 96.52 95.00 96.77 91.46 98.11 100.00 95.65 97.09 96.00 91.89 94.83 94.87 97.14 92.86 93.44 91.84 96.30 97.96 98.00 95.24 93.94 90.62 96.88 96.30 89.19 96.77 89.80 100.00 90.48 96.00 91.43 91.53 96.15 97.73 100.00 94.12 91.67 94.44 92.31 93.55 97.17 94.23 93.75 96.77 100.00 90.00 100.00 90.00 97.92 90.48 K jcn_only_AD CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27044867;chr3R_27044771_27045188;chr3R_27044771_27045257;chr3R_27044771_27045132;chr3R_27044771_27045110;chr3R_27044771_27044831;chr3R_27044771_27044990;chr3R_27044771_27044895 chr3R_27044771_27045027 chr3R_27044671_27044770;chr3R_27045258_27045273 0.07 0.63 0.00 0.09 0.00 0.00 0.59 0.08 0.00 0.00 0.19 0.13 0.48 0.00 0.00 0.20 0.00 0.15 0.00 0.00 0.23 0.78 2.00 0.00 0.00 0.13 2.50 0.00 0.00 0.00 0.00 0.00 0.18 0.08 0.00 0.00 0.00 3.33 0.00 0.25 0.35 0.07 0.17 0.63 0.00 0.29 0.00 0.00 0.15 2.13 0.00 4.17 0.00 0.00 0.12 0.00 1.05 0.12 K alternative_donor CG15881,RI_chr3L_19799338_19799394,RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19798419_19799405;chr3L_19798903_19799405 chr3L_19799338_19799405 chr3L_19799406_19799494;chr3L_19798405_19798418 100.00 100.00 88.89 100.00 100.00 100.00 100.00 83.33 100.00 100.00 87.50 100.00 100.00 100.00 87.50 91.67 85.71 100.00 81.82 94.74 85.71 100.00 88.89 90.00 71.43 87.50 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 100.00 91.67 100.00 100.00 92.86 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 92.31 100.00 100.00 90.91 100.00 90.91 100.00 100.00 K intron_retention CG31033,RI_chr3R_25658089_25658914 chr3R - chr3R_25653376_25653571 chr3R_25653375_25653376;chr3R_25653571_25653572 chr3R_25653015_25653375;chr3R_25653572_25653715 0.00 0.00 0.00 5.26 0.00 0.00 0.00 3.77 5.41 0.00 0.00 3.23 0.00 0.00 0.00 4.00 0.00 6.25 0.00 2.00 0.00 0.00 3.66 0.00 0.00 6.67 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 2.94 6.82 2.47 0.00 1.52 4.84 0.00 2.82 0.00 0.00 0.00 0.00 0.00 0.00 7.35 2.17 0.00 0.00 0.00 2.70 2.38 0.00 1.19 0.00 K intron_retention drongo,I_chr2L_837379_847733 chr2L - chr2L_835291_835352 chr2L_835290_835291;chr2L_835352_835353 chr2L_835215_835290;chr2L_835353_835547 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 1.05 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RpL31,CG1827 chr2R + chr2R_5474789_5474951;chr2R_5474734_5474951 chr2R_5474844_5474951 chr2R_5474952_5475211;chr2R_5474727_5474733 1.18 1.09 1.47 0.53 0.98 1.74 4.55 1.04 1.10 1.18 0.61 2.62 1.92 2.41 0.63 3.25 0.83 1.85 1.30 0.96 1.32 0.34 1.33 1.04 1.26 1.03 6.45 0.97 3.91 0.99 4.36 0.45 0.49 0.89 1.72 2.75 1.99 1.85 2.37 0.21 2.04 0.38 1.13 0.62 0.34 2.76 2.66 0.90 1.41 0.55 3.33 1.06 0.80 7.32 0.51 3.21 1.90 0.84 K intron_retention wts chr3R - chr3R_26626686_26632009 chr3R_26626685_26626686;chr3R_26632009_26632010 chr3R_26626373_26626685;chr3R_26632010_26632317 45.10 53.33 48.98 29.11 50.00 37.78 57.14 48.33 46.02 21.43 61.40 44.86 50.88 40.00 44.44 27.91 54.29 39.39 49.33 71.15 46.81 33.33 45.10 55.26 71.88 57.89 43.18 42.11 19.61 38.71 33.90 26.09 23.91 33.33 27.03 62.00 56.67 61.11 60.98 59.14 28.81 37.04 44.44 58.33 45.16 28.30 42.86 27.06 44.64 41.67 61.22 45.16 66.67 71.43 41.67 60.87 70.00 41.10 K alternative_acceptor CG10254 chr3R - chr3R_19518068_19518139 chr3R_19518083_19518139 chr3R_19518140_19518534;chr3R_19517793_19518067 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 90.00 NA 100.00 NA NA NA NA 100.00 92.86 NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K jcn_only_AD sar1,I_chr3R_18185148_18185246 chr3R + chr3R_18182472_18183252;chr3R_18182490_18183252;chr3R_18182467_18183252 chr3R_18182521_18183252 chr3R_18183253_18183393;chr3R_18182460_18182466 5.45 5.06 6.61 7.98 5.91 6.77 2.90 2.75 4.46 5.48 5.34 3.69 5.22 3.03 3.99 3.86 6.61 5.58 3.49 3.57 3.54 5.33 3.38 9.32 7.92 3.53 4.17 14.86 8.05 9.09 5.45 7.59 9.63 4.69 1.01 10.10 2.90 5.32 6.56 4.55 7.87 3.29 2.00 7.34 6.74 7.69 6.04 6.90 3.02 4.03 5.99 6.56 6.16 8.08 2.78 3.57 5.73 7.58 K intron_retention Cirl,R_chr2R_4502755_4503407,E_chr2R_4505783_4507316 chr2R + chr2R_4505967_4506023 chr2R_4505966_4505967;chr2R_4506023_4506024 chr2R_4505739_4505966;chr2R_4506024_4506234 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Mlc-c,C_chrX_5514320_5515557 chrX - chrX_5516313_5516449 chrX_5516312_5516313;chrX_5516449_5516450 chrX_5516285_5516312;chrX_5516450_5516552 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 3.03 0.00 NA 5.36 4.35 0.00 4.76 0.00 0.00 0.00 0.00 0.00 3.85 0.00 3.03 0.00 0.00 0.00 1.15 0.00 0.00 0.00 2.78 0.00 9.52 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 1.47 0.00 0.00 2.38 1.85 0.00 0.00 0.00 0.00 0.00 2.33 3.77 0.00 K intron_retention CG8908,I_chr2R_16158045_16158109 chr2R + chr2R_16158045_16158109 chr2R_16158044_16158045;chr2R_16158109_16158110 chr2R_16157945_16158044;chr2R_16158110_16158209 31.25 NA NA NA NA NA NA NA 31.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_last_exon Su(var)3-9,I_chr3R_11088444_11088825 chr3R - chr3R_11088194_11088268;chr3R_11085409_11088268 chr3R_11087620_11088268 chr3R_11085172_11085408 chr3R_11085583_11087619 chr3R_11088269_11088443 7.55 6.42 6.42 10.56 6.37 6.03 5.34 6.65 7.23 20.54 4.78 7.47 7.93 7.17 6.37 12.29 6.33 6.23 7.17 8.39 5.78 7.05 8.78 8.33 7.38 5.42 8.08 14.47 10.80 7.90 7.12 10.91 13.33 6.33 8.20 11.11 7.91 7.19 6.88 6.62 10.23 6.70 7.55 6.20 7.94 9.72 8.25 10.38 6.99 12.06 7.32 9.13 7.62 8.39 6.38 8.18 8.11 11.97 K alternative_acceptor Nipped-B,I_chr2R_580301_580515,I_chr2R_580453_580515,I_chr2R_580989_582555,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_580453_580515 chr2R_580456_580515 chr2R_580516_580582;chr2R_580368_580452 100.00 93.33 100.00 97.14 100.00 100.00 98.18 98.15 100.00 100.00 100.00 97.56 100.00 96.15 95.24 97.44 95.65 100.00 96.55 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 96.00 97.50 97.37 100.00 97.73 100.00 100.00 100.00 NA NA 96.15 100.00 97.73 100.00 95.45 100.00 97.14 100.00 100.00 97.87 100.00 96.00 100.00 100.00 100.00 100.00 90.91 100.00 98.11 K intron_retention CG6569,I_chr3R_17694702_17694760 chr3R - chr3R_17693467_17693530 chr3R_17693466_17693467;chr3R_17693530_17693531 chr3R_17693127_17693466;chr3R_17693531_17693603 91.67 90.91 90.00 100.00 NA 100.00 87.88 95.45 89.29 NA 90.00 87.50 90.00 91.67 100.00 95.45 91.67 81.82 82.35 92.31 92.31 100.00 100.00 100.00 100.00 78.57 95.65 89.47 100.00 91.67 90.77 90.91 90.00 86.67 90.91 87.50 NA NA NA 83.33 NA 100.00 100.00 NA 90.00 92.31 100.00 100.00 95.45 100.00 96.55 81.82 NA 90.00 100.00 83.33 81.82 NA K intron_retention CG8008,I_chr2R_5046791_5046840,CG8046 chr2R - chr2R_5048278_5048345 chr2R_5048277_5048278;chr2R_5048345_5048346 chr2R_5048230_5048277;chr2R_5048346_5048455 29.41 NA NA 29.41 NA NA NA 25.00 33.33 NA NA NA NA NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA NA 31.58 NA NA NA NA NA NA NA NA NA NA 15.38 NA NA NA NA NA NA 21.43 NA NA NA NA NA NA NA NA NA K intron_retention Cpr chr2L + chr2L_6341887_6342157 chr2L_6341886_6341887;chr2L_6342157_6342158 chr2L_6341835_6341886;chr2L_6342158_6342349 1.93 NA NA 0.00 NA NA 12.50 NA 13.33 13.33 NA 15.38 NA NA NA NA NA NA NA 0.00 NA 3.85 8.00 12.50 0.00 NA 0.00 5.56 4.35 0.00 NA NA 7.14 7.14 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA K intron_retention msn,I_chr3L_2558033_2560115,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2558393_2560115 chr3L_2558392_2558393;chr3L_2560115_2560116 chr3L_2558293_2558392;chr3L_2560116_2560215 40.00 NA NA 42.86 NA NA 90.91 50.00 40.00 NA NA 33.33 NA NA 38.46 35.00 NA NA 45.45 44.44 NA 16.67 50.00 45.45 33.33 NA 50.00 NA NA 17.65 41.67 NA 22.58 53.33 NA 36.36 NA 54.55 56.25 27.27 23.08 19.05 50.00 NA NA NA NA 25.00 42.86 NA 40.00 NA NA NA NA 30.77 NA 20.00 K alternative_donor dNAT1,CG13319,RI_chr2R_8812301_8816468 chr2R + chr2R_8805410_8805499;chr2R_8805206_8805499 chr2R_8805260_8805499 chr2R_8805500_8808364;chr2R_8805191_8805205 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 25.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K jcn_only_AD I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17198803_17199019;chr3R_17198803_17200781 chr3R_17198803_17199052 chr3R_17198703_17198802;chr3R_17200782_17200881 12.06 12.12 21.88 13.04 7.69 NA 14.29 11.43 11.67 NA 36.00 7.89 12.00 8.33 17.39 0.00 12.50 20.69 21.88 7.35 5.00 8.82 14.29 6.06 NA 5.26 12.12 NA 6.67 13.64 38.46 17.14 3.45 6.38 NA 12.50 13.95 7.69 12.90 8.77 4.00 12.50 20.83 NA 5.71 11.76 8.70 5.45 8.89 12.90 15.38 15.38 3.57 NA 17.07 20.00 16.67 4.55 K intron_retention tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563503_565232 chr3R_563502_563503;chr3R_565232_565233 chr3R_563488_563502;chr3R_565233_565290 28.87 NA 28.57 29.17 NA NA 38.10 28.00 20.93 NA 45.45 46.15 33.33 NA 14.29 53.33 26.67 NA 50.00 43.48 NA NA NA NA NA NA NA NA NA NA 30.77 NA NA 27.27 NA NA NA NA NA NA NA 24.24 NA NA NA NA NA NA 27.78 NA NA NA NA NA 17.39 NA NA NA K alternative_acceptor nxf2,I_chr3L_16573041_16573135 chr3L - chr3L_16571566_16571675 chr3L_16571614_16571675 chr3L_16571676_16571777;chr3L_16570731_16571565 100.00 100.00 100.00 100.00 NA NA 100.00 85.71 93.75 NA 85.71 100.00 87.50 NA 100.00 90.91 100.00 85.71 100.00 100.00 NA 100.00 100.00 100.00 90.00 NA 91.67 NA NA 90.00 87.50 NA 90.00 100.00 NA 92.86 100.00 100.00 100.00 100.00 NA 93.33 NA 100.00 NA 88.89 100.00 NA 91.67 100.00 92.31 83.33 NA 91.67 88.89 100.00 90.00 100.00 K intron_retention CG13933,I_chr3L_1773911_1773984 chr3L - chr3L_1772319_1772479 chr3L_1772318_1772319;chr3L_1772479_1772480 chr3L_1772022_1772318;chr3L_1772480_1773369 90.91 90.91 100.00 96.88 87.50 80.00 78.26 93.33 90.91 NA NA 80.95 92.31 100.00 90.00 81.82 100.00 93.33 94.74 84.38 NA 60.00 91.67 90.91 93.33 90.91 72.22 77.78 80.00 80.00 80.95 88.89 90.91 91.67 90.00 90.00 92.31 NA 92.31 93.33 100.00 92.31 100.00 NA 90.91 93.33 77.78 76.92 96.43 84.62 78.57 NA NA 88.24 93.33 92.86 91.67 80.00 K intron_retention RpL22,noncoding_21234,snoRNA:Psi18S-531,snoRNA:Psi28S-2179 chrX - chrX_657022_658334 chrX_657021_657022;chrX_658334_658335 chrX_656593_657021;chrX_658335_658556 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.24 100.00 90.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 91.67 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 93.33 NA 100.00 100.00 100.00 100.00 95.65 100.00 95.83 100.00 90.00 89.47 100.00 100.00 NA 100.00 94.12 100.00 NA 100.00 100.00 100.00 100.00 95.00 100.00 K intron_retention sowah chr3L - chr3L_12565301_12565411 chr3L_12565300_12565301;chr3L_12565411_12565412 chr3L_12564639_12565300;chr3L_12565412_12565727 0.00 0.00 0.00 1.08 0.00 0.00 0.93 0.00 0.72 0.00 0.00 2.74 0.00 0.00 0.00 2.11 0.00 0.00 0.00 1.56 0.00 2.60 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 3.08 0.00 0.00 0.96 0.00 0.00 0.00 2.90 0.00 2.27 0.00 0.88 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 K alternative_acceptor CG32795,RI_chrX_2677454_2677799,I_chrX_2677459_2682526,I_chrX_2677729_2677799,I_chrX_2679163_2681784 chrX - chrX_2677459_2677799 chrX_2677729_2677799 chrX_2677800_2677899;chrX_2677453_2677458 5.33 0.00 7.69 NA 0.00 0.00 5.88 5.56 4.35 NA 7.69 2.94 18.18 6.67 13.33 14.29 NA NA 8.33 7.41 NA 7.69 NA 5.88 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 5.00 7.69 NA 0.00 4.55 4.76 2.56 5.56 5.41 12.50 6.67 0.00 6.45 6.67 0.00 6.67 5.56 5.26 NA 0.00 0.00 4.55 4.76 4.55 5.88 K intron_retention Inos,noncoding_4874 chr2R - chr2R_3345552_3346113 chr2R_3345551_3345552;chr2R_3346113_3346114 chr2R_3345287_3345551;chr2R_3346114_3346215 41.67 NA NA 90.00 NA NA 46.15 NA 29.41 NA NA 25.00 NA NA NA NA NA NA NA 47.37 NA 37.50 31.25 46.15 NA NA 73.33 69.23 55.36 27.27 26.67 NA 26.67 41.67 NA NA 45.45 NA NA 14.29 NA 36.84 NA 41.67 NA 23.08 NA 44.44 35.71 NA 58.33 NA NA NA NA NA NA NA K intron_retention sec8,CG2082 chr3R - chr3R_1584212_1584483 chr3R_1584211_1584212;chr3R_1584483_1584484 chr3R_1583871_1584211;chr3R_1584484_1584572 13.04 14.46 11.11 17.46 14.29 14.29 10.53 12.07 11.11 13.04 13.51 12.79 8.89 18.92 13.85 14.00 20.59 11.11 10.00 12.87 15.22 15.38 7.76 13.54 15.56 15.56 11.49 14.89 17.24 10.00 16.39 20.93 12.07 10.45 12.50 13.24 12.82 8.22 11.02 8.11 21.62 10.23 12.12 12.28 21.05 25.86 16.36 10.29 12.07 11.11 8.14 16.67 10.87 20.75 10.87 22.64 33.70 15.91 K multi_cassette ens,I_chr3L_4130719_4131120 chr3L - chr3L_4128974_4131120 chr3L_4128974_4129650;chr3L_4129792_4130388;chr3L_4130644_4131120 chr3L_4129651_4129791;chr3L_4130389_4130643 chr3L_4128946_4128973;chr3L_4131121_4131220 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG17760 chr2R + chr2R_8514674_8514741 chr2R_8514673_8514674;chr2R_8514741_8514742 chr2R_8514591_8514673;chr2R_8514742_8514755 1.48 0.75 1.90 1.93 0.82 1.61 1.56 2.63 1.95 1.39 1.48 0.91 2.22 0.00 0.00 2.14 1.73 2.34 2.99 2.05 0.00 5.63 0.63 0.61 0.00 1.77 2.80 0.00 0.00 3.03 1.69 2.06 1.82 1.09 0.00 2.74 1.28 0.00 1.49 0.55 2.36 1.03 3.19 0.00 3.26 1.42 0.69 1.42 2.91 0.90 0.00 0.00 0.00 0.00 1.71 1.48 0.60 2.65 K intron_retention fry,I_chr3L_9636648_9656042 chr3L - chr3L_9627025_9627786 chr3L_9627024_9627025;chr3L_9627786_9627787 chr3L_9626065_9627024;chr3L_9627787_9628413 4.17 NA 0.00 0.00 NA 0.00 NA NA 2.70 NA 0.00 9.52 NA NA 7.69 NA NA NA NA 10.00 NA 9.52 5.13 6.90 9.52 NA 4.88 0.00 4.00 3.45 0.00 0.00 5.26 0.00 7.41 3.85 4.44 NA 6.00 12.12 4.35 4.17 NA 8.00 0.00 0.00 0.00 6.67 2.56 9.52 5.26 NA 0.00 4.17 NA NA 0.00 0.00 K alternative_acceptor tud,I_chr2R_17086183_17086333 chr2R + chr2R_17071303_17071602 chr2R_17071303_17071571 chr2R_17070855_17071302;chr2R_17071603_17071959 98.71 98.46 97.62 98.55 100.00 98.46 98.71 97.71 99.48 100.00 96.67 98.77 97.67 100.00 98.95 97.20 97.59 100.00 98.95 99.28 98.53 99.15 98.57 95.45 98.00 100.00 98.21 98.04 98.92 98.31 98.99 100.00 98.63 98.06 100.00 100.00 96.55 96.30 100.00 99.26 100.00 97.50 100.00 97.06 94.74 97.06 100.00 98.53 100.00 100.00 98.39 100.00 96.55 100.00 97.52 100.00 100.00 100.00 K intron_retention CG10576,psnoRNA:CG10576-a,I_chr3L_5758117_5758186 chr3L - chr3L_5757896_5758186 chr3L_5757895_5757896;chr3L_5758186_5758187 chr3L_5757810_5757895;chr3L_5758187_5758284 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 1.14 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Osbp chr3R - chr3R_20761871_20761986 chr3R_20761871_20761976 chr3R_20760591_20761870;chr3R_20761987_20763959 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 97.78 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 K alternative_acceptor Cenp-C chr3R + chr3R_4391955_4392053 chr3R_4391955_4392017 chr3R_4390620_4391954;chr3R_4392054_4392078 93.33 100.00 87.50 87.50 100.00 NA 90.91 88.24 93.33 NA NA 93.75 100.00 87.50 100.00 100.00 85.71 100.00 100.00 95.00 NA NA 66.67 88.89 88.89 92.31 90.91 NA NA 100.00 90.00 NA 90.00 100.00 100.00 75.00 90.00 NA 100.00 92.86 100.00 100.00 100.00 NA NA NA NA 100.00 95.24 88.89 90.91 100.00 NA NA 87.50 100.00 NA 85.71 K intron_retention CG1021,RI_chr3R_2217711_2231463,I_chr3R_2218682_2231463,I_chr3R_2219634_2231390,I_chr3R_2231383_2231463 chr3R - chr3R_2216232_2216309 chr3R_2216231_2216232;chr3R_2216309_2216310 chr3R_2216111_2216231;chr3R_2216310_2216815 0.00 0.00 0.00 3.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3632,RI_chrX_16195880_16196242 chrX + chrX_16192874_16193052 chrX_16192873_16192874;chrX_16193052_16193053 chrX_16191882_16192873;chrX_16193053_16193243 0.00 3.45 0.00 0.00 0.00 0.00 8.33 2.27 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.23 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 5.41 8.33 2.00 0.00 0.00 NA 3.85 0.00 0.00 4.08 0.00 0.00 0.00 NA NA 5.13 0.00 0.00 0.00 K intron_retention Fps85D,I_chr3R_5194729_5194776,I_chr3R_5216796_5218450 chr3R - chr3R_5218695_5219962 chr3R_5218694_5218695;chr3R_5219962_5219963 chr3R_5218463_5218694;chr3R_5219963_5220244 10.27 NA NA NA NA NA 28.57 10.00 6.67 NA NA 10.53 NA NA NA NA NA NA NA 12.50 NA NA 14.29 NA NA NA 50.00 NA NA NA NA NA NA 12.50 NA NA 8.00 NA NA 0.00 NA 8.33 NA 0.00 NA NA NA 14.29 0.00 NA 15.38 NA NA NA 6.67 NA NA NA K alternative_donor CG5973,I_chr2L_7441485_7443583,I_chr2L_7443388_7443583 chr2L + chr2L_7440963_7443583;chr2L_7440852_7443583;chr2L_7440959_7443583 chr2L_7441757_7443583 chr2L_7443584_7443683;chr2L_7440710_7440851 0.00 5.88 0.00 2.38 0.00 5.00 5.00 3.45 3.23 0.00 1.69 2.08 4.76 4.00 2.94 5.36 3.45 5.88 3.33 2.00 2.17 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 5.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.85 4.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 K jcn_only_AD Rho1,I_chr2R_11990455_11992537,RI_chr2R_11991687_11992537 chr2R + chr2R_11990362_11991115;chr2R_11990814_11991115;chr2R_11990398_11991115 chr2R_11990326_11991115 chr2R_11991116_11991279;chr2R_11990232_11990325 8.76 NA NA 13.33 NA NA 20.00 10.00 9.52 NA NA 6.45 NA NA 17.39 8.82 NA NA NA 14.29 NA NA NA NA NA NA NA NA 20.83 NA NA NA NA 6.45 NA NA NA NA NA NA NA 6.25 NA NA NA 3.70 NA NA 5.00 NA 0.00 NA NA NA 8.70 NA NA 0.00 K intron_retention Pvr,I_chr2L_8226604_8228082,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8227151_8227669 chr2L_8227150_8227151;chr2L_8227669_8227670 chr2L_8227095_8227150;chr2L_8227670_8227720 75.00 80.95 71.88 96.55 88.89 80.00 66.67 82.93 77.14 57.14 NA 78.57 93.55 88.24 77.42 62.96 65.52 64.00 78.79 53.49 91.67 NA 72.73 72.41 85.71 72.00 87.10 NA NA 77.78 66.67 66.67 53.85 76.19 78.57 58.62 74.19 83.33 74.29 83.02 NA 78.43 65.00 57.14 NA 70.00 75.00 64.29 84.21 80.00 81.08 73.08 53.33 73.33 87.88 56.25 63.64 78.57 K alternative_donor M(2)21AB,I_chr2L_107839_110405,I_chr2L_107957_108587,I_chr2L_110878_111037,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_108347_108587;chr2L_108102_108587;chr2L_107839_108587 chr2L_108227_108587 chr2L_108588_108687;chr2L_107833_107838 75.00 74.07 78.57 70.45 85.71 80.95 75.68 64.58 82.61 70.00 69.23 78.43 85.71 73.91 79.31 71.43 81.82 82.76 75.86 69.49 65.38 82.05 78.75 79.25 66.67 75.00 63.64 70.18 68.57 70.97 75.68 60.00 53.57 78.26 75.00 51.72 85.92 78.05 71.79 66.13 50.00 80.70 73.91 88.31 69.57 69.23 80.00 65.71 73.53 75.51 76.92 81.25 72.73 76.19 77.14 78.79 75.00 66.67 K intron_retention CG10165 chr2L - chr2L_19527954_19528087 chr2L_19527953_19527954;chr2L_19528087_19528088 chr2L_19527761_19527953;chr2L_19528088_19528369 1.48 1.56 0.00 0.00 0.00 0.00 3.92 2.74 1.06 0.00 2.27 2.56 0.00 0.00 5.77 4.65 5.41 0.00 0.00 2.11 0.00 4.44 0.00 2.33 0.00 0.00 4.35 0.00 3.85 0.00 4.17 4.65 1.48 6.06 0.00 0.00 0.00 0.00 2.41 3.30 3.17 2.44 0.00 0.00 3.19 5.56 1.32 6.78 5.88 0.00 2.15 0.00 0.00 3.08 0.00 0.00 2.33 2.04 K intron_retention JIL-1,I_chr3L_11084873_11085218 chr3L - chr3L_11076438_11076500 chr3L_11076437_11076438;chr3L_11076500_11076501 chr3L_11075626_11076437;chr3L_11076501_11076585 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA K cassette CG1516,I_chr2R_5743716_5743899,I_chr2R_5746990_5747874,RI_chr2R_5752988_5757801 chr2R - chr2R_5740711_5742015 chr2R_5740711_5741187;chr2R_5741236_5742015 chr2R_5741188_5741235 chr2R_5740053_5740710;chr2R_5742016_5743525 66.67 57.14 64.00 80.95 60.00 43.48 66.67 93.33 70.00 67.86 61.54 83.78 NA 92.86 73.91 68.75 80.00 72.22 76.19 78.95 58.82 28.95 66.67 66.67 NA 54.17 58.82 NA 55.56 57.14 78.95 87.50 78.95 80.00 52.63 86.67 57.58 71.43 63.33 63.16 72.73 71.88 57.14 63.64 64.29 62.50 62.07 81.82 67.86 55.56 51.35 69.23 63.64 52.94 72.22 72.73 63.16 85.71 K cassette sfl,I_chr3L_6517197_6518787 chr3L + chr3L_6539453_6541786 chr3L_6539453_6540348;chr3L_6540702_6541786 chr3L_6540349_6540701 chr3L_6537584_6539452;chr3L_6541787_6542116 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 94.12 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 95.45 100.00 95.24 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG4630,RI_chr2R_9103472_9103634,I_chr2R_9103765_9103852,I_chr2R_9103956_9104108,RI_chr2R_9104206_9104265 chr2R - chr2R_9104984_9105093 chr2R_9104983_9104984;chr2R_9105093_9105094 chr2R_9104717_9104983;chr2R_9105094_9105704 0.00 0.00 0.00 10.53 NA NA 0.00 NA 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 0.00 0.00 NA NA K alternative_donor CG5004,E_chrX_17024712_17024996 chrX + chrX_17019966_17020033 chrX_17019978_17020033 chrX_17020034_17020118;chrX_17019909_17019965 77.78 NA 77.78 80.00 NA NA NA 71.43 91.67 NA NA 72.73 NA NA NA NA 85.71 NA NA 61.11 NA NA NA NA NA NA NA NA NA NA NA NA NA 77.78 NA NA NA NA NA NA NA 84.62 NA NA NA NA NA NA 73.33 NA NA NA NA NA 80.00 NA NA NA K jcn_only_AA Gbeta13F,I_chrX_15754284_15755167,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15754284_15755172;chrX_15754284_15755148;chrX_15754284_15755021;chrX_15754284_15755409;chrX_15754284_15755256;chrX_15754284_15754777;chrX_15754284_15755416;chrX_15754284_15755268 chrX_15754284_15755184 chrX_15754256_15754283 0.67 0.00 0.76 0.92 0.00 1.77 0.40 1.65 0.59 0.00 0.00 0.40 0.81 0.67 0.00 1.06 0.92 0.00 0.65 1.37 2.33 2.00 1.78 0.90 0.00 0.83 2.36 3.39 0.00 5.00 0.00 0.00 0.00 0.38 0.00 0.93 1.01 0.00 0.00 0.68 0.00 0.46 0.00 1.81 2.56 0.87 0.00 0.00 0.66 1.79 1.42 0.68 1.75 0.00 0.65 1.02 0.00 2.47 K intron_retention Pvr,I_chr2L_8226604_8228082,I_chr2L_8229001_8230124,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8226607_8227669 chr2L_8226606_8226607;chr2L_8227669_8227670 chr2L_8226458_8226606;chr2L_8227670_8227720 95.65 94.12 87.50 94.29 95.00 88.89 96.30 96.97 96.77 92.86 90.00 95.71 94.12 95.00 96.88 97.22 100.00 100.00 94.59 98.90 100.00 NA 92.86 96.15 95.65 95.65 100.00 NA NA 100.00 95.65 NA 90.00 97.22 95.45 91.30 84.85 94.12 100.00 97.56 NA 88.89 92.86 100.00 NA 87.50 92.31 94.74 98.39 100.00 96.77 100.00 100.00 100.00 91.89 93.33 NA 91.67 K cassette Cda5 chr2L - chr2L_33271_34557;chr2L_29069_34557 chr2L_29069_33844,chr2L_33271_33844;chr2L_34289_34557 chr2L_33845_34288 chr2L_29024_29068;chr2L_34558_34596 100.00 NA NA NA NA NA NA 100.00 85.71 NA NA NA NA NA NA 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 NA 75.00 NA NA 66.67 NA NA NA NA 100.00 NA NA 75.00 NA 100.00 100.00 NA 100.00 NA 100.00 NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA 100.00 K intron_retention vls chr2L - chr2L_20064573_20064624 chr2L_20064572_20064573;chr2L_20064624_20064625 chr2L_20064237_20064572;chr2L_20064625_20065001 0.00 0.00 2.94 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 K intron_retention CG33691_CG33692,CG33691,noncoding_22320 chrX + chrX_6766955_6771946 chrX_6766954_6766955;chrX_6771946_6771947 chrX_6766749_6766954;chrX_6771947_6772516 60.00 50.00 56.00 72.22 35.71 50.00 62.86 57.50 56.00 63.64 66.67 52.54 61.90 72.22 60.00 76.92 61.11 77.78 53.85 67.50 62.50 56.67 51.22 60.71 40.00 55.00 60.00 62.86 81.82 70.59 50.00 72.22 76.32 56.25 51.61 67.74 62.90 57.58 64.29 66.67 64.71 53.70 55.00 57.58 71.43 75.00 52.38 65.91 60.00 55.56 50.00 53.85 43.75 47.06 68.18 59.09 75.00 75.00 K intron_retention I_chr2R_2754447_2755071,Spn4,CG9454 chr2R - chr2R_2764628_2764725 chr2R_2764627_2764628;chr2R_2764725_2764726 chr2R_2764450_2764627;chr2R_2764726_2764867 21.88 21.62 26.67 29.63 16.67 21.43 28.00 21.28 22.22 9.68 35.71 24.49 30.00 21.88 30.77 20.00 22.22 17.39 17.39 20.29 30.77 25.00 12.50 11.86 26.09 41.18 20.00 18.52 22.22 30.00 36.59 24.14 23.81 19.61 15.38 41.67 13.64 14.29 21.15 28.85 40.00 22.41 27.27 9.43 22.58 20.00 28.12 22.22 14.29 16.67 9.09 26.92 12.20 14.29 23.08 10.91 11.27 11.54 K multi_cassette Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24348983_24351592 chr3R_24348983_24349248;chr3R_24349420_24349755;chr3R_24349940_24349995;chr3R_24351030_24351138;chr3R_24351310_24351592 chr3R_24349249_24349419;chr3R_24349756_24349939;chr3R_24349996_24351029;chr3R_24351139_24351309 chr3R_24348417_24348982;chr3R_24351593_24351772 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 80.00 90.00 100.00 95.24 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor l(1)G0255,CG4095 chrX + chrX_6572650_6573858 chrX_6572650_6573827 chrX_6572590_6572649;chrX_6573859_6573990 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.98 2.94 0.00 0.00 0.00 3.45 0.00 0.00 1.75 0.00 4.44 1.09 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.70 0.00 3.64 1.61 0.00 0.00 0.00 1.09 0.00 0.00 1.54 0.00 0.00 0.00 0.00 1.27 2.22 K intron_retention cnc,I_chr3R_19014852_19016738,I_chr3R_19046366_19046507,I_chr3R_19046619_19047567 chr3R - chr3R_19018004_19023008 chr3R_19018003_19018004;chr3R_19023008_19023009 chr3R_19017777_19018003;chr3R_19023009_19023501 5.56 0.00 0.00 13.64 12.00 10.53 7.14 14.29 14.89 0.00 13.33 11.43 26.67 NA 15.00 20.00 18.75 20.00 15.79 23.81 20.00 1.50 1.41 3.51 0.00 NA 7.27 1.67 4.48 3.57 8.00 5.26 6.15 24.14 6.06 3.70 6.61 4.26 3.85 6.17 0.00 7.69 14.29 3.64 5.00 5.56 0.00 3.51 15.15 0.00 0.00 0.00 3.03 0.00 12.50 0.00 0.00 3.85 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389762_2395659 chrX_2389762_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2393243;chrX_2393712_2395659 chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2393244_2393711 chrX_2389645_2389761;chrX_2395660_2395759 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD gus,I_chr2R_1009158_1009345,RI_chr2R_1009158_1011540,I_chr2R_1009346_1015730 chr2R - chr2R_1009158_1009273;chr2R_1009158_1009277 chr2R_1009158_1009241 chr2R_1009058_1009157;chr2R_1009278_1009300 57.13 NA NA 59.26 NA NA NA 55.00 76.92 NA NA 54.55 NA NA NA 47.62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 75.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 69.57 NA NA NA NA NA NA NA NA 43.48 K intron_retention chrw,RI_chr2R_19408490_19409650,RI_chr2R_19408490_19410750 chr2R - chr2R_19408490_19409581 chr2R_19408489_19408490;chr2R_19409581_19409582 chr2R_19408390_19408489;chr2R_19409582_19409715 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 2.38 0.00 0.00 10.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 4.76 0.00 NA 0.00 0.00 2.86 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 5.71 K intron_retention Tm1,I_chr3R_11120969_11125831,I_chr3R_11121267_11122312,I_chr3R_11121267_11124998,RI_chr3R_11125070_11125831,I_chr3R_11125070_11126469 chr3R + chr3R_11120969_11121148 chr3R_11120968_11120969;chr3R_11121148_11121149 chr3R_11120869_11120968;chr3R_11121149_11121266 3.83 3.20 4.39 12.02 4.71 4.35 8.96 5.20 5.24 1.27 5.56 6.21 1.43 3.37 2.73 6.03 3.49 3.16 5.49 4.94 3.61 3.23 1.10 1.23 6.38 6.98 5.04 12.73 5.88 6.06 5.49 2.44 1.31 4.66 6.02 1.30 2.23 1.68 3.36 4.08 3.17 3.83 6.94 2.94 0.00 4.72 0.91 4.69 6.38 1.72 5.56 2.08 0.00 2.38 4.58 2.33 0.83 2.36 N jcn_only_AA trbl,I_chr3L_20390576_20390678 chr3L - chr3L_20390576_20393525 chr3L_20393312_20393525 chr3L_20393526_20394677;chr3L_20390476_20390575 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 16.36 NA NA 0.00 0.00 NA 0.00 0.00 18.97 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.62 23.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Fps85D,I_chr3R_5194729_5194776,I_chr3R_5216796_5218450 chr3R - chr3R_5198300_5198477;chr3R_5198303_5198477 chr3R_5195433_5198477 chr3R_5198478_5198655 98.89 99.15 100.00 99.42 99.05 99.10 98.53 97.01 99.11 100.00 100.00 99.47 98.80 99.15 99.18 100.00 100.00 99.12 99.16 98.60 100.00 95.38 95.17 100.00 95.89 99.07 100.00 95.12 96.91 97.30 97.73 96.77 98.21 99.45 97.73 95.05 97.66 100.00 99.29 98.66 98.77 99.04 100.00 99.26 95.56 100.00 98.70 97.93 98.67 98.89 98.47 95.38 98.46 97.18 100.00 98.97 96.84 97.94 K intron_retention CG9305 chr2L - chr2L_13372637_13372694 chr2L_13372636_13372637;chr2L_13372694_13372695 chr2L_13372308_13372636;chr2L_13372695_13373853 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 3.39 2.56 K multi_cassette Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24348983_24351592 chr3R_24348983_24349501;chr3R_24349697_24349755;chr3R_24349940_24349995;chr3R_24351030_24351138;chr3R_24351310_24351592 chr3R_24349502_24349696;chr3R_24349756_24349939;chr3R_24349996_24351029;chr3R_24351139_24351309 chr3R_24348417_24348982;chr3R_24351593_24351772 100.00 100.00 100.00 81.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 80.00 88.89 100.00 95.45 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Bub3,I_chr3R_25500779_25500838 chr3R - chr3R_25500779_25500838 chr3R_25500786_25500838 chr3R_25500839_25500938;chr3R_25500679_25500778 100.00 100.00 99.10 99.70 100.00 100.00 100.00 100.00 100.00 99.50 100.00 100.00 99.53 100.00 100.00 100.00 100.00 100.00 100.00 99.68 100.00 100.00 99.73 100.00 99.43 100.00 100.00 99.63 99.27 100.00 98.31 100.00 99.43 99.64 100.00 100.00 99.63 100.00 99.76 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.62 100.00 100.00 100.00 100.00 99.70 K intron_retention CG12104 chr3L - chr3L_1601934_1601997 chr3L_1601933_1601934;chr3L_1601997_1601998 chr3L_1600942_1601933;chr3L_1601998_1602066 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.77 NA NA 6.25 NA NA NA NA NA NA NA NA 0.00 NA 5.26 NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG4858,I_chr3L_20520381_20520577,EI_chr3L_20520642_20520692 chr3L + chr3L_20520377_20520692;chr3L_20520642_20520692 chr3L_20520381_20520692 chr3L_20520693_20520792;chr3L_20520281_20520376 96.26 97.17 98.15 94.17 96.67 95.71 95.45 92.37 94.77 95.52 96.70 93.14 95.65 93.90 100.00 97.41 97.18 94.37 96.70 99.50 95.77 89.02 97.22 95.95 96.04 96.08 95.29 96.38 97.10 97.54 99.12 97.30 97.83 97.03 97.62 91.95 93.33 88.99 90.86 93.60 98.38 93.37 97.87 97.56 96.26 96.30 95.71 98.87 97.04 90.08 94.12 90.91 100.00 94.57 96.70 93.41 96.76 97.76 K intron_retention kst,I_chr3L_3367008_3367514 chr3L + chr3L_3366963_3367514 chr3L_3366962_3366963;chr3L_3367514_3367515 chr3L_3366908_3366962;chr3L_3367515_3367614 98.46 96.34 96.23 87.88 100.00 100.00 98.31 98.99 99.19 96.43 96.43 95.74 100.00 98.25 96.72 98.75 100.00 100.00 98.08 98.95 90.32 98.21 98.99 97.62 96.55 92.98 98.92 100.00 93.33 98.53 100.00 96.55 91.18 96.34 97.83 90.41 98.90 98.28 99.03 97.73 97.92 99.09 100.00 100.00 94.12 98.84 98.72 84.00 100.00 100.00 98.85 100.00 98.46 97.37 98.48 98.77 100.00 97.30 K jcn_only_AA Rnp4F,I_chrX_5214525_5214591 chrX - chrX_5216487_5216663 chrX_5216583_5216663 chrX_5216664_5216731;chrX_5216423_5216486 4.76 NA NA NA NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention l(2)k05819,I_chr2L_4396173_4396266 chr2L + chr2L_4399601_4399660 chr2L_4399600_4399601;chr2L_4399660_4399661 chr2L_4399354_4399600;chr2L_4399661_4400105 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG17159,CG17162,noncoding_25215 chrXHet - chrXHet_69232_75250;chrXHet_69232_75279 chrXHet_69232_75430 chrXHet_69195_69231;chrXHet_75431_75453 1.04 NA 0.00 3.33 NA 5.00 2.78 2.94 5.17 NA 3.23 9.52 NA NA 4.35 0.00 NA 0.00 NA 0.00 0.00 NA 4.35 0.00 NA 0.00 NA NA NA NA 0.00 NA NA 4.88 NA NA 0.00 0.00 5.41 4.35 NA 2.86 NA 0.00 NA NA NA NA 2.08 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention RI_chr3R_5088705_5088796,Aats-trp,RI_chr3R_5090799_5091007 chr3R - chr3R_5091131_5091201 chr3R_5091130_5091131;chr3R_5091201_5091202 chr3R_5091008_5091130;chr3R_5091202_5091781 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 1.71 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 1.84 0.49 0.00 0.00 0.00 0.49 1.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.65 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG18812,I_chr2R_3617214_3617883,I_chr2R_3617214_3622585 chr2R - chr2R_3617214_3622881 chr2R_3617214_3617883 chr2R_3617147_3617213;chr2R_3622882_3623125 4.35 3.33 6.90 11.22 5.00 4.17 4.00 5.88 4.58 4.55 11.43 8.24 3.39 3.57 4.84 5.06 3.70 3.92 5.26 6.25 8.33 16.28 4.17 4.17 6.52 4.00 3.81 6.25 6.00 5.06 3.08 2.56 6.49 5.22 3.77 6.00 5.19 2.44 4.60 5.13 4.17 5.51 3.45 4.35 6.67 3.12 1.82 6.10 3.15 2.13 4.12 5.66 3.03 3.57 4.35 2.17 2.50 1.39 K intron_retention CG5261,I_chr2L_7428611_7428877 chr2L + chr2L_7428680_7428877 chr2L_7428679_7428680;chr2L_7428877_7428878 chr2L_7428612_7428679;chr2L_7428878_7428977 0.83 0.00 0.00 0.83 0.00 0.00 0.00 0.85 1.03 1.85 0.00 1.96 0.00 0.00 0.00 0.00 0.00 1.20 0.00 1.24 0.00 8.51 3.23 0.00 3.39 0.00 2.04 1.52 2.35 3.26 4.21 0.00 0.00 2.63 1.79 1.12 0.68 0.90 0.68 3.09 0.00 1.08 1.89 1.27 0.00 0.00 0.00 4.17 0.00 4.11 0.00 4.55 0.00 1.41 0.00 2.02 0.81 1.82 K intron_retention wdb,I_chr3R_23394314_23406731,I_chr3R_23394314_23406794,I_chr3R_23394314_23407159,RI_chr3R_23394314_23407186,I_chr3R_23394314_23407412,I_chr3R_23394314_23407715,I_chr3R_23394314_23407721,RI_chr3R_23406048_23406731,RI_chr3R_23406048_23406794,I_chr3R_23406048_23406928,RI_chr3R_23406048_23407402 chr3R - chr3R_23406048_23406928 chr3R_23406047_23406048;chr3R_23406928_23406929 chr3R_23405948_23406047;chr3R_23406929_23407028 100.00 NA NA NA NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA 88.89 NA NA NA NA NA NA 92.31 NA NA NA NA NA NA NA NA NA N intron_retention Not1,I_chr2R_5463624_5463682 chr2R - chr2R_5455592_5456522 chr2R_5455591_5455592;chr2R_5456522_5456523 chr2R_5455002_5455591;chr2R_5456523_5457661 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention RI_chr4_980473_983026,noncoding_20846,R_chr4_980665_983026,R_chr4_980665_983029,R_chr4_980750_982876,R_chr4_980750_983026 chr4 + chr4_980665_983029 chr4_980664_980665;chr4_983029_983030 chr4_980650_980664;chr4_983030_983080 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 92.31 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 K intron_retention msn,I_chr3L_2558033_2560115,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2558390_2559314 chr3L_2558389_2558390;chr3L_2559314_2559315 chr3L_2558293_2558389;chr3L_2559315_2559422 89.20 NA NA NA NA NA 100.00 NA 90.91 NA NA NA NA NA NA 87.50 NA NA NA 53.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor cic chr3R + chr3R_16125131_16125189 chr3R_16125131_16125186 chr3R_16124803_16125130;chr3R_16125190_16125353 81.82 78.12 81.82 81.61 90.00 73.53 81.25 80.56 78.31 95.00 81.82 85.25 81.25 77.14 86.96 81.58 86.36 78.57 80.95 77.14 86.21 79.41 76.36 81.58 88.24 83.72 85.71 75.00 81.63 75.00 78.79 68.42 87.10 76.19 71.43 81.82 89.23 83.33 87.10 81.67 91.67 91.67 90.91 83.64 81.25 95.24 88.24 90.48 83.10 78.57 79.41 88.57 88.24 87.50 80.85 71.43 84.62 84.21 K alternative_acceptor RpL15 chr3LHet + chr3LHet_2397859_2398127 chr3LHet_2397859_2398049 chr3LHet_2397802_2397858;chr3LHet_2398128_2398454 98.21 98.82 95.05 98.99 99.12 98.86 97.92 97.39 97.71 98.44 99.23 97.53 96.43 97.28 94.74 98.13 99.26 97.62 96.55 98.45 97.73 99.36 100.00 98.59 98.80 96.43 100.00 96.23 98.57 98.55 99.78 95.95 99.18 99.03 100.00 98.00 98.92 97.83 98.82 97.85 98.41 96.50 98.18 100.00 96.43 93.83 98.77 97.47 96.23 98.90 98.21 95.65 95.83 100.00 95.35 98.88 98.53 94.87 K cassette Vha100-1,I_chr3R_24958227_24960770,RI_chr3R_24959152_24959582,I_chr3R_24959804_24960770,CE_chr3R_24962426_24962797 chr3R + chr3R_24958227_24959582;chr3R_24958227_24960770 chr3R_24958227_24959059;chr3R_24959152_24959582,chr3R_24959152_24960770 chr3R_24959060_24959151 chr3R_24958127_24958226;chr3R_24960771_24960870 25.81 22.97 26.00 29.79 17.31 18.52 23.88 18.31 20.91 35.90 18.92 14.95 57.14 18.18 24.07 22.64 20.51 13.64 34.62 15.38 16.33 20.97 34.26 32.11 44.68 25.49 30.56 43.59 46.55 31.43 9.57 33.33 34.48 17.58 36.54 32.14 25.42 27.14 31.31 20.00 43.10 23.81 15.56 33.33 33.87 25.76 25.00 37.70 20.88 26.92 30.85 29.17 31.91 26.92 20.00 22.81 25.81 46.03 K alternative_acceptor Mtp,I_chr2L_20922613_20922685 chr2L - chr2L_20920215_20920285 chr2L_20920227_20920285 chr2L_20920286_20921216;chr2L_20919686_20920214 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 95.24 100.00 90.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 NA 100.00 100.00 100.00 100.00 K alternative_donor tomosyn,I_chrX_12531219_12531470,I_chrX_12534873_12541731,noncoding_23357,I_chrX_12548772_12549203 chrX + chrX_12542817_12545142;chrX_12543084_12545142 chrX_12543216_12545142 chrX_12545143_12545259;chrX_12542700_12542816 54.70 53.33 50.00 48.48 50.00 44.44 71.43 28.57 80.00 NA 70.00 66.67 42.86 33.33 45.45 62.50 NA 50.00 55.56 58.82 75.00 55.17 71.43 52.38 64.71 60.00 38.89 75.00 58.62 76.92 50.00 58.82 58.82 50.00 53.33 53.85 43.59 78.57 55.17 45.28 70.83 54.84 50.00 48.48 60.00 47.83 57.89 52.46 75.00 46.15 64.00 54.55 NA 53.85 53.33 57.14 52.38 69.64 K intron_retention Atu chr3R + chr3R_1439346_1439409 chr3R_1439345_1439346;chr3R_1439409_1439410 chr3R_1439282_1439345;chr3R_1439410_1439654 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 3.51 0.00 0.00 0.00 0.00 1.82 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention osa,I_chr3R_13542657_13542834,I_chr3R_13542657_13543500,I_chr3R_13542657_13543662,I_chr3R_13542657_13543668,I_chr3R_13543730_13543786 chr3R - chr3R_13542657_13543968 chr3R_13542656_13542657;chr3R_13543968_13543969 chr3R_13542557_13542656;chr3R_13543969_13544017 60.00 56.00 63.16 34.29 70.83 47.37 52.78 48.48 62.90 52.00 76.47 59.68 37.04 50.00 64.00 60.71 43.33 60.87 58.62 55.56 57.14 65.79 57.63 62.50 56.52 54.17 39.39 61.11 64.71 51.43 70.00 NA 70.59 56.76 76.47 53.12 54.17 65.00 48.48 57.78 NA 60.47 68.42 65.62 NA 76.92 83.33 60.00 58.62 73.68 45.16 74.07 85.71 50.00 61.54 71.43 77.78 60.00 K alternative_donor fs(1)h,I_chrX_7950171_7952371,I_chrX_7954192_7955240 chrX - chrX_7944590_7945403 chrX_7944590_7945391 chrX_7944470_7944589;chrX_7945404_7945562 20.97 22.22 24.19 19.51 28.07 17.78 18.57 25.58 19.44 29.03 20.41 24.17 16.18 24.62 26.56 21.33 27.66 24.19 20.69 23.23 19.23 6.02 28.30 23.81 16.28 19.12 24.36 29.55 28.95 13.64 17.86 22.73 18.31 24.10 23.73 20.97 18.60 20.59 20.83 25.30 19.35 24.26 20.63 19.67 17.14 25.00 19.15 14.29 26.61 19.51 24.78 32.79 17.95 17.86 23.61 19.51 13.79 28.57 K alternative_donor f-cup,RI_chr3R_9522069_9522165,I_chr3R_9524004_9524059,EI_chr3R_9524613_9524789 chr3R - chr3R_9522069_9522160;chr3R_9522069_9522163;chr3R_9522069_9522165 chr3R_9522069_9522158 chr3R_9521969_9522068;chr3R_9522166_9522265 17.14 NA NA 14.29 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette noncoding_20684,R_chr4_488962_489782,I_chr4_490841_491639 chr4 + chr4_488621_491639 chr4_488621_489415;chr4_489957_491639 chr4_489416_489956 chr4_488555_488620;chr4_491640_491739 66.67 50.00 NA 75.00 NA NA 66.67 85.71 66.67 NA NA 57.14 NA 75.00 NA 57.14 NA NA 60.00 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA NA NA NA NA 75.00 NA 85.71 75.00 NA NA 50.00 33.33 75.00 70.00 42.86 66.67 NA NA 50.00 NA 60.00 50.00 75.00 K jcn_only_AA Dif,I_chr2L_17414333_17414528,I_chr2L_17418395_17418487 chr2L - chr2L_17418375_17418487 chr2L_17418395_17418487 chr2L_17418488_17418555;chr2L_17418295_17418374 0.00 0.00 0.99 0.71 0.00 0.00 0.00 0.00 0.69 2.50 0.00 0.00 1.30 1.67 0.00 1.87 0.00 2.17 1.10 0.00 0.00 0.91 0.00 0.00 5.00 1.64 0.00 2.08 1.27 2.53 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 2.99 1.53 0.00 1.18 0.00 0.00 0.00 0.99 0.00 0.52 0.61 2.78 0.00 2.86 0.00 0.00 1.33 0.00 0.00 0.49 K cassette Fhos,CE_chr3L_8759730_8775647,I_chr3L_8779538_8779726 chr3L + chr3L_8779538_8780618 chr3L_8779538_8779721;chr3L_8780445_8780618 chr3L_8779722_8780444 chr3L_8779442_8779537;chr3L_8780619_8780820 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention rl,I_chr2RHet_199154_207044,RI_chr2RHet_203476_203577,RI_chr2RHet_203592_207044,I_chr2RHet_232696_247338,RI_chr2RHet_240197_247338 chr2RHet + chr2RHet_198817_198973 chr2RHet_198816_198817;chr2RHet_198973_198974 chr2RHet_198804_198816;chr2RHet_198974_199153 100.00 100.00 100.00 96.88 NA 87.50 97.83 97.22 100.00 NA NA 95.83 92.31 100.00 NA 96.88 NA NA 100.00 95.24 NA NA 100.00 NA NA NA 100.00 NA NA NA 88.89 NA NA 96.30 NA 100.00 NA NA 100.00 100.00 NA 95.83 100.00 100.00 NA 100.00 NA NA 96.15 100.00 100.00 100.00 NA NA 90.00 100.00 100.00 NA N intron_retention CG9646 chr2R + chr2R_12936500_12937513 chr2R_12936499_12936500;chr2R_12937513_12937514 chr2R_12936416_12936499;chr2R_12937514_12937680 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 36.84 NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA N intron_retention CG15908_CG9410,CG15908,CG9410 chr2R + chr2R_2556738_2556834 chr2R_2556737_2556738;chr2R_2556834_2556835 chr2R_2556598_2556737;chr2R_2556835_2556939 13.33 NA NA 15.38 NA NA 28.57 NA 15.00 NA NA 10.53 NA NA NA 13.33 NA NA NA 9.52 NA 21.43 0.00 14.29 NA NA NA NA 38.89 NA 5.41 NA 13.33 6.25 NA NA NA NA 21.43 20.00 NA 12.00 NA NA 13.33 5.56 NA 26.67 30.77 NA 7.69 NA 14.29 NA NA 12.50 NA NA K intron_retention CG7206 chrX - chrX_17984271_17984349 chrX_17984270_17984271;chrX_17984349_17984350 chrX_17984016_17984270;chrX_17984350_17984508 28.30 26.32 31.58 41.38 NA 33.33 36.84 34.38 26.32 12.50 12.50 25.00 45.45 40.00 42.11 25.00 NA 33.33 23.53 28.30 46.67 16.67 26.53 24.14 27.59 50.00 72.73 66.67 29.63 41.18 44.83 11.11 54.55 44.00 30.43 33.33 28.21 34.48 34.88 17.31 40.00 27.45 36.36 24.00 15.15 19.57 24.24 21.95 32.43 33.33 37.14 22.22 19.05 23.08 17.39 23.53 25.00 17.24 K intron_retention mew,I_chrX_13133259_13150649 chrX - chrX_13112698_13113780 chrX_13112697_13112698;chrX_13113780_13113781 chrX_13111301_13112697;chrX_13113781_13113914 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.84 0.00 0.00 0.00 1.59 1.48 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mu2,I_chr3L_1945382_1945647 chr3L - chr3L_1943723_1943779 chr3L_1943722_1943723;chr3L_1943779_1943780 chr3L_1943615_1943722;chr3L_1943780_1943821 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA NA NA NA 0.00 7.69 NA 0.00 0.00 0.00 NA 0.00 6.25 5.56 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 K jcn_only_AA Sema-1a,R_chr2L_8564297_8610230,E_chr2L_8622170_8631026 chr2L + chr2L_8661488_8662456 chr2L_8661488_8662438 chr2L_8661359_8661487;chr2L_8662457_8662646 67.74 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA 67.74 NA NA NA NA NA NA 76.19 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention noncoding_5243,l(2)44DEa,I_chr2R_4553577_4562151,I_chr2R_4553817_4565934,I_chr2R_4554300_4563976,I_chr2R_4565692_4565934 chr2R + chr2R_4567992_4568053 chr2R_4567991_4567992;chr2R_4568053_4568054 chr2R_4567887_4567991;chr2R_4568054_4568122 1.13 0.00 1.16 2.27 1.38 3.75 0.00 1.55 1.33 0.00 1.05 0.82 0.86 0.00 0.57 2.86 1.22 2.29 2.15 1.53 1.74 1.33 2.58 1.17 0.00 0.52 1.85 0.00 0.00 0.00 2.35 0.00 0.00 2.46 1.01 1.94 0.85 0.00 0.00 2.65 3.23 1.13 0.00 0.00 0.00 2.22 0.00 2.80 2.55 1.80 2.30 1.54 0.00 0.00 1.93 0.00 0.88 0.81 K jcn_only_AA scra,EI_chr2R_3480349_3480405 chr2R + chr2R_3480339_3480465 chr2R_3480339_3480405 chr2R_3480249_3480338;chr2R_3480466_3480505 99.65 98.11 99.31 99.11 99.44 100.00 99.53 99.23 99.77 100.00 100.00 99.51 99.03 100.00 99.65 99.63 100.00 99.57 99.56 99.83 100.00 99.64 99.71 99.62 99.53 99.20 99.63 100.00 99.65 99.70 100.00 100.00 99.82 99.52 100.00 99.62 99.10 99.58 99.50 99.60 99.66 99.80 100.00 100.00 100.00 99.39 100.00 99.84 99.56 98.95 99.65 98.68 100.00 99.57 100.00 100.00 99.17 99.72 K intron_retention CG1673 chrX + chrX_13293038_13293363 chrX_13293037_13293038;chrX_13293363_13293364 chrX_13292618_13293037;chrX_13293364_13293594 0.00 0.00 0.00 0.28 0.00 0.30 0.00 0.00 0.15 0.00 0.00 0.45 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.15 0.00 0.00 0.00 0.97 1.00 0.52 0.00 0.00 0.00 0.22 0.00 0.00 0.28 0.00 0.00 0.00 0.18 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr2R_17169674_17170491,CG10069,I_chr2R_17169897_17170495,I_chr2R_17170432_17170491,I_chr2R_17171765_17171886 chr2R + chr2R_17169897_17170491 chr2R_17169896_17169897;chr2R_17170491_17170492 chr2R_17169889_17169896;chr2R_17170492_17170591 3.92 6.06 4.08 1.67 5.71 2.04 20.51 10.20 5.71 1.85 0.00 1.22 0.00 5.41 0.00 8.93 0.00 6.06 0.00 4.12 0.00 6.25 3.45 3.28 5.00 6.82 3.92 0.00 4.48 6.12 8.00 0.00 4.55 5.63 5.00 8.57 0.00 3.77 2.63 2.63 12.20 3.70 6.67 0.00 0.00 2.17 2.50 6.19 4.00 6.67 1.67 4.08 0.00 0.00 6.82 3.23 5.56 3.28 K intron_retention CG9098 chr2L - chr2L_6008038_6008095 chr2L_6008037_6008038;chr2L_6008095_6008096 chr2L_6007564_6008037;chr2L_6008096_6008502 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_donor Acox57D-d chr2R + chr2R_17276686_17277563 chr2R_17277146_17277563 chr2R_17277564_17277658;chr2R_17276376_17276685 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 100.00 NA 100.00 30.00 NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA NA NA NA NA 100.00 100.00 K alternative_acceptor Crk,RI_chr4_231302_233315,I_chr4_231307_232253 chr4 + chr4_231113_231207 chr4_231113_231183 chr4_231064_231112;chr4_231208_231293 100.00 100.00 100.00 89.74 100.00 100.00 97.83 100.00 98.21 100.00 100.00 97.50 95.65 100.00 94.74 95.12 95.00 95.00 100.00 97.78 94.44 100.00 95.24 93.33 100.00 100.00 96.30 88.89 NA 91.67 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 93.75 95.65 100.00 97.67 100.00 96.15 100.00 100.00 100.00 100.00 98.08 100.00 96.00 100.00 94.12 93.33 96.30 95.24 100.00 100.00 K jcn_only_AD CEI_chrX_17177009_17196871,CG5445,I_chrX_17196752_17196871,RI_chrX_17196772_17196871,I_chrX_17196820_17196875,I_chrX_17198393_17198730 chrX + chrX_17196681_17196871;chrX_17196546_17196871;chrX_17196820_17196871;chrX_17196617_17196871 chrX_17196541_17196871 chrX_17196872_17196971;chrX_17196536_17196540 8.89 4.17 14.29 NA NA NA 9.09 12.12 24.53 NA NA 13.64 NA NA NA 15.38 NA 23.81 9.38 29.51 NA 11.63 0.00 3.57 NA 10.00 0.00 4.35 3.33 NA NA NA 19.23 30.43 NA NA 3.12 NA 4.55 7.32 10.00 31.03 20.00 7.14 NA 9.09 6.25 8.89 19.44 3.70 8.33 0.00 3.85 5.00 NA 0.00 0.00 8.89 K intron_retention pan chr4 + chr4_128999_129052 chr4_128998_128999;chr4_129052_129053 chr4_128029_128998;chr4_129053_129408 93.04 100.00 92.00 96.08 92.86 94.74 94.29 93.22 100.00 NA 91.67 84.44 88.00 91.67 100.00 93.62 96.30 94.44 96.97 97.44 100.00 75.00 94.74 92.86 91.67 100.00 94.12 78.57 NA 84.21 90.00 NA 66.67 96.49 92.31 100.00 90.00 90.91 90.91 92.00 NA 92.16 96.00 94.44 NA 88.89 NA 91.67 98.21 NA 88.89 92.86 NA NA 95.83 NA 100.00 NA K jcn_only_AA RI_chr3L_201061_201173,NitFhit,I_chr3L_212783_212843 chr3L + chr3L_203791_203872 chr3L_203791_203843 chr3L_203699_203790;chr3L_203873_205311 98.97 NA 100.00 98.39 100.00 100.00 97.56 95.83 97.78 NA 95.83 97.73 100.00 NA 97.30 96.97 100.00 100.00 100.00 97.22 96.43 100.00 NA NA NA 100.00 NA NA 95.83 100.00 92.59 100.00 98.97 94.44 NA NA NA NA NA 97.62 93.94 98.39 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA 94.59 K alternative_donor Arp14D,RE_chrX_16445264_16446372 chrX - chrX_16443182_16443251;chrX_16443182_16443253 chrX_16443182_16443249 chrX_16442302_16443181;chrX_16443254_16443445 52.78 57.78 49.30 49.50 55.77 45.90 55.43 52.78 45.21 54.55 38.89 42.11 70.45 55.71 54.17 54.81 51.72 58.67 59.70 49.07 43.40 56.86 55.56 46.15 NA 64.18 44.44 64.71 47.30 54.05 41.49 50.79 65.91 57.14 48.15 55.17 51.43 41.67 62.96 44.53 40.45 60.63 59.65 NA 46.43 48.70 40.00 59.71 61.48 50.00 42.11 43.59 52.00 52.38 57.47 54.84 53.66 52.78 K intron_retention Gel,RI_chr3R_62662_62721,RI_chr3R_62666_63346,I_chr3R_62933_63346,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_62527_63346 chr3R_62526_62527;chr3R_63346_63347 chr3R_62304_62526;chr3R_63347_63446 0.68 0.60 1.37 1.44 0.00 0.00 2.35 0.57 1.20 0.61 0.57 0.82 0.85 0.87 1.81 1.64 0.00 0.44 1.51 0.36 0.98 17.46 0.56 0.56 0.00 1.22 3.41 0.00 0.00 0.68 0.00 0.00 0.34 0.74 0.00 1.18 0.90 1.16 0.55 1.60 0.00 0.71 0.95 0.45 0.00 1.22 0.00 0.98 0.85 1.23 1.09 2.82 0.00 0.00 1.42 0.00 0.00 0.36 K jcn_only_AD I_chr2R_18485635_18487415,CG4269 chr2R + chr2R_18485635_18487415 chr2R_18486956_18487415 chr2R_18487416_18487515;chr2R_18485535_18485634 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 98.61 100.00 95.00 NA NA 93.55 95.45 87.50 100.00 NA 100.00 95.24 NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 96.30 NA NA NA NA NA NA NA K intron_retention CG5903 chr3R - chr3R_11971429_11971499 chr3R_11971428_11971429;chr3R_11971499_11971500 chr3R_11971276_11971428;chr3R_11971500_11972081 100.00 100.00 100.00 100.00 100.00 98.84 99.19 100.00 100.00 100.00 100.00 100.00 98.61 100.00 100.00 99.32 100.00 100.00 100.00 100.00 97.96 100.00 100.00 99.06 100.00 100.00 99.26 100.00 100.00 97.30 100.00 100.00 100.00 99.30 100.00 100.00 98.31 100.00 98.97 99.02 98.94 99.39 100.00 100.00 98.39 99.22 100.00 98.59 100.00 99.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_donor I_chrX_4000307_4003527,CG4857 chrX + chrX_4011929_4011996;chrX_4011429_4011996;chrX_4011270_4011996 chrX_4011315_4011996 chrX_4011997_4012308;chrX_4011093_4011269 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention SdhB chr2R + chr2R_2695323_2695594 chr2R_2695322_2695323;chr2R_2695594_2695595 chr2R_2695116_2695322;chr2R_2695595_2696031 1.01 0.00 0.45 0.45 0.00 0.00 1.32 0.00 0.66 0.73 0.66 1.13 0.00 0.70 1.18 0.00 0.00 1.10 0.00 1.01 1.13 2.42 0.68 1.18 2.61 3.59 1.90 1.28 1.19 1.10 0.66 1.77 1.80 1.90 2.22 5.23 1.26 0.75 0.75 1.78 4.48 1.09 0.00 0.58 2.02 1.77 1.91 1.82 1.32 1.01 0.74 0.71 0.46 0.67 0.99 0.72 0.25 1.57 K intron_retention Tao-1 chrX - chrX_19466459_19466529 chrX_19466458_19466459;chrX_19466529_19466530 chrX_19466285_19466458;chrX_19466530_19466646 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.61 0.00 0.00 2.33 0.00 5.31 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG14767,RI_chr2R_4609761_4610761,RI_chr2R_4610372_4610761 chr2R - chr2R_4607538_4610761 chr2R_4609761_4610761 chr2R_4610762_4610861;chr2R_4607438_4607537 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Adam,I_chr2R_5856741_5856974,I_chr2R_5856741_5857245,I_chr2R_5857058_5857250,I_chr2R_5857078_5857245 chr2R + chr2R_5856741_5856974 chr2R_5856741_5856965 chr2R_5856641_5856740;chr2R_5856975_5857057 98.29 100.00 99.17 98.47 98.57 97.14 96.88 99.24 98.24 98.59 98.75 98.94 100.00 97.80 99.07 96.97 98.25 96.94 98.90 97.70 100.00 99.07 98.56 97.87 96.90 100.00 97.67 99.06 99.08 98.31 99.23 98.94 96.99 96.80 97.89 100.00 98.06 98.29 97.87 97.51 99.05 97.67 100.00 97.60 98.12 97.25 99.50 98.25 99.47 97.45 98.83 95.56 98.23 98.51 97.52 98.27 96.27 98.64 K intron_retention lqf,I_chr3L_7522287_7522807 chr3L + chr3L_7528568_7528642 chr3L_7528567_7528568;chr3L_7528642_7528643 chr3L_7528296_7528567;chr3L_7528643_7528744 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpS20,snoRNA:Psi18S-1295 chr3R + chr3R_16648296_16648523 chr3R_16648295_16648296;chr3R_16648523_16648524 chr3R_16648155_16648295;chr3R_16648524_16648581 0.04 0.04 0.05 0.02 0.04 0.04 0.04 0.06 0.01 0.00 0.06 0.03 0.00 0.11 0.05 0.00 0.00 0.00 0.00 0.02 0.00 0.08 0.04 0.06 0.00 0.00 0.23 0.59 0.11 0.05 0.10 0.00 0.00 0.03 0.00 0.00 0.03 0.02 0.07 0.00 0.04 0.03 0.00 0.08 0.01 0.04 0.00 0.00 0.09 0.10 0.06 0.07 0.06 0.05 0.00 0.04 0.08 0.04 K intron_retention vtd,F_chr3LHet_2248642_2276770 chr3LHet + chr3LHet_2253939_2253991 chr3LHet_2253938_2253939;chr3LHet_2253991_2253992 chr3LHet_2253759_2253938;chr3LHet_2253992_2254247 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 NA 0.00 5.41 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K jcn_only_AA Tor chr2L + chr2L_13005998_13006352 chr2L_13005998_13006349 chr2L_13005431_13005997;chr2L_13006353_13006363 28.29 NA NA NA NA NA 28.57 28.00 32.00 NA NA 21.74 NA NA 14.29 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.81 NA NA NA NA NA 40.00 NA 33.33 NA NA NA NA NA NA 45.83 NA NA NA NA NA NA NA NA NA K alternative_donor Eps-15,I_chr2R_20660319_20660496 chr2R - chr2R_20660319_20660496 chr2R_20660319_20660463 chr2R_20660219_20660318;chr2R_20660497_20660521 96.15 94.12 95.24 96.36 97.67 88.89 96.97 96.72 96.00 97.30 97.67 92.94 91.18 97.06 100.00 97.14 92.50 97.37 91.89 95.29 97.06 87.88 98.44 90.77 96.97 96.55 96.23 94.44 96.15 93.18 94.87 100.00 98.04 92.86 94.29 88.24 96.74 98.15 98.51 84.42 95.83 91.95 90.00 97.73 89.74 97.73 97.44 100.00 98.25 97.96 98.25 97.22 94.12 94.44 90.91 91.67 95.83 93.10 K intron_retention CG8908,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16155027_16155084 chr2R_16155026_16155027;chr2R_16155084_16155085 chr2R_16154474_16155026;chr2R_16155085_16156041 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA 4.00 NA 5.71 0.00 NA NA NA 14.29 NA NA NA 0.00 NA 0.00 NA NA 12.50 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention Lasp,I_chr3L_16671761_16673911,I_chr3L_16671780_16671907,R_chr3L_16672970_16673911,RI_chr3L_16674471_16704042 chr3L - chr3L_16671761_16673911 chr3L_16671760_16671761;chr3L_16673911_16673912 chr3L_16671680_16671760;chr3L_16673912_16674011 4.17 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.17 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor osa,R_chr3R_13525411_13533475,I_chr3R_13525426_13525859 chr3R - chr3R_13525426_13525849;chr3R_13525426_13533492 chr3R_13525426_13525859 chr3R_13525326_13525425;chr3R_13533493_13533575 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.54 0.00 0.00 0.00 2.44 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RpL28,RI_chr3L_3221710_3221877,I_chr3L_3221982_3222744,snoRNA:Or-CD11c,snoRNA:Or-CD11b,snoRNA:Or-CD11a,I_chr3L_3222575_3222787 chr3L - chr3L_3221982_3222787;chr3L_3221982_3222152;chr3L_3221982_3222574;chr3L_3221982_3222365;chr3L_3221982_3222847 chr3L_3221982_3222926 chr3L_3221882_3221981;chr3L_3222927_3222958 90.30 86.02 96.51 98.58 96.62 95.59 83.56 97.97 90.73 79.12 95.32 87.89 92.62 86.27 97.66 90.30 96.71 96.28 97.79 95.53 96.03 90.57 52.94 46.03 42.11 93.89 47.62 47.83 81.62 86.21 91.81 94.02 96.04 97.91 77.78 75.29 51.02 53.66 45.83 83.41 92.07 96.92 98.18 73.08 95.31 84.14 50.00 88.53 95.78 53.85 40.48 61.36 90.62 34.21 96.75 52.86 68.24 94.23 K alternative_acceptor dnc,I_chrX_3150245_3150319,I_chrX_3150351_3152643 chrX + chrX_3150245_3152646;chrX_3150245_3150319 chrX_3150245_3152643 chrX_3150235_3150244;chrX_3152647_3152733 50.00 60.00 61.54 37.50 50.00 45.45 50.00 45.00 26.67 NA 50.00 54.17 46.67 50.00 56.25 46.15 50.00 60.00 68.75 54.29 80.00 NA 75.00 33.33 NA 55.56 50.00 NA NA 33.33 58.82 NA 100.00 56.52 33.33 33.33 NA NA NA NA NA 69.57 55.56 NA NA 33.33 50.00 NA 54.84 NA 50.00 NA NA 50.00 54.55 33.33 40.00 NA K intron_retention CG40191,I_chr2RHet_392279_392824 chr2RHet + chr2RHet_392279_392824 chr2RHet_392278_392279;chr2RHet_392824_392825 chr2RHet_392179_392278;chr2RHet_392825_392923 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 97.92 99.08 100.00 98.18 98.28 100.00 98.15 97.73 100.00 100.00 97.92 100.00 100.00 98.36 100.00 100.00 98.59 100.00 95.45 100.00 95.77 96.97 100.00 99.22 100.00 100.00 97.83 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.15 98.41 100.00 99.16 98.31 100.00 97.87 96.00 97.56 98.72 100.00 98.46 100.00 K intron_retention CG9170 chrX - chrX_15876723_15876790 chrX_15876722_15876723;chrX_15876790_15876791 chrX_15876397_15876722;chrX_15876791_15876950 90.91 90.91 80.00 92.31 88.89 NA 91.67 92.31 91.67 NA NA 100.00 NA 90.00 90.91 85.71 NA NA 100.00 94.12 100.00 94.12 94.44 91.67 93.75 NA 93.33 75.00 84.62 83.33 88.24 NA 95.45 82.35 90.91 93.33 95.00 86.67 89.47 95.65 NA 95.45 100.00 88.89 NA NA 83.33 NA 92.86 90.00 85.71 87.50 88.89 100.00 81.82 90.91 91.67 90.00 K intron_retention CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1665632_1665705 chr2R_1665631_1665632;chr2R_1665705_1665706 chr2R_1665494_1665631;chr2R_1665706_1666132 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 1.69 0.00 0.00 0.00 0.00 6.67 NA 0.00 0.00 0.00 0.00 2.50 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 1.64 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG32313,REI_chr3L_1545423_1545473,I_chr3L_1545606_1545652 chr3L - chr3L_1545100_1545169 chr3L_1545104_1545169 chr3L_1545170_1545405;chr3L_1544988_1545099 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention stck,I_chr3R_4184313_4184380,I_chr3R_4184660_4184730 chr3R + chr3R_4184677_4184730 chr3R_4184676_4184677;chr3R_4184730_4184731 chr3R_4184594_4184676;chr3R_4184731_4184799 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Caf1,mRpS10 chr3R + chr3R_11051637_11051690 chr3R_11051637_11051687 chr3R_11051568_11051636;chr3R_11051691_11051756 88.89 90.43 85.14 91.11 85.87 87.72 91.78 86.17 87.44 90.74 97.22 89.55 92.45 96.36 87.50 91.18 85.71 88.14 90.41 90.48 84.62 79.66 89.09 90.00 82.22 90.00 83.95 91.67 90.48 88.89 86.27 86.21 86.96 87.10 84.78 90.91 84.93 92.63 90.48 90.00 88.46 90.54 86.79 87.01 87.27 87.50 87.18 95.65 90.00 90.48 91.67 86.11 81.63 95.35 91.03 86.90 88.89 95.65 K intron_retention CycG,I_chr3R_27427946_27436602,I_chr3R_27427953_27429034,I_chr3R_27427953_27431334,RE_chr3R_27427953_27436598 chr3R - chr3R_27427953_27428792 chr3R_27427952_27427953;chr3R_27428792_27428793 chr3R_27427853_27427952;chr3R_27428793_27428795 79.55 86.49 87.04 78.67 81.25 84.09 88.46 93.75 89.76 40.00 88.37 95.96 86.27 86.54 86.21 90.00 95.92 79.55 91.94 78.33 87.50 48.42 64.00 55.56 76.19 83.33 68.75 40.24 52.63 43.21 92.73 70.59 52.17 90.22 80.56 57.32 35.19 88.24 47.62 65.38 75.00 85.23 87.50 73.08 38.89 75.00 72.00 73.33 87.39 52.63 76.27 80.00 82.14 77.78 94.64 75.00 57.45 86.49 K intron_retention wb chr2L + chr2L_14325555_14326434 chr2L_14325554_14325555;chr2L_14326434_14326435 chr2L_14324897_14325554;chr2L_14326435_14327053 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA K intron_retention CG14812,I_chrX_1754047_1754089,E_chrX_1755139_1755188,I_chrX_1757755_1757801 chrX - chrX_1752712_1752768 chrX_1752711_1752712;chrX_1752768_1752769 chrX_1752594_1752711;chrX_1752769_1752830 3.77 4.76 3.39 2.41 1.39 3.88 3.57 2.99 2.65 7.14 4.35 3.31 0.98 2.13 5.22 1.80 0.00 4.12 1.90 3.93 0.00 3.77 5.26 5.56 3.53 4.46 4.58 8.97 9.90 4.20 4.46 4.72 2.99 3.87 5.62 3.70 3.94 4.90 3.72 4.73 5.13 5.05 1.32 2.04 1.86 4.19 4.00 0.85 5.18 1.63 2.99 3.23 0.98 2.84 4.76 3.50 3.53 5.30 K jcn_only_AD ALiX,I_chr3R_23531574_23532266 chr3R - chr3R_23522554_23522613 chr3R_23522554_23522610 chr3R_23522185_23522553;chr3R_23522614_23522796 100.00 99.75 100.00 100.00 100.00 99.34 100.00 99.50 99.84 99.63 100.00 99.41 100.00 100.00 98.71 99.06 99.38 99.48 100.00 99.57 100.00 99.59 100.00 99.34 100.00 100.00 99.22 100.00 99.48 100.00 100.00 99.01 100.00 99.12 100.00 100.00 100.00 99.52 99.51 100.00 100.00 99.53 100.00 100.00 100.00 100.00 100.00 99.50 100.00 99.64 99.73 100.00 100.00 99.54 99.32 99.18 99.49 100.00 K intron_retention Mbs,I_chr3L_16045251_16046108,I_chr3L_16057100_16057329 chr3L + chr3L_16062044_16063219 chr3L_16062043_16062044;chr3L_16063219_16063220 chr3L_16061924_16062043;chr3L_16063220_16063364 6.19 3.39 12.90 8.79 10.26 3.85 17.78 19.35 7.04 6.06 9.52 10.67 20.00 8.33 7.84 16.36 12.12 6.90 12.82 10.42 13.04 6.49 5.68 0.00 5.26 0.00 8.16 8.57 7.41 5.50 6.00 6.06 3.77 14.55 0.00 4.00 7.07 0.00 2.35 6.19 1.23 6.52 10.53 5.06 1.79 3.74 0.00 5.81 8.79 2.27 5.56 4.55 2.67 0.00 12.90 7.84 0.00 4.27 K intron_retention Rox8,I_chr3R_19872211_19872659,I_chr3R_19872214_19872630,I_chr3R_19872214_19872636,I_chr3R_19872214_19872838,I_chr3R_19876189_19876240 chr3R - chr3R_19872214_19873540 chr3R_19872213_19872214;chr3R_19873540_19873541 chr3R_19872114_19872213;chr3R_19873541_19873670 9.09 NA 0.00 6.06 NA 0.00 9.52 10.53 9.09 NA 13.33 8.33 7.69 0.00 0.00 13.04 12.50 NA 9.52 20.83 12.50 NA 0.00 25.00 NA 0.00 11.76 NA 17.65 NA 10.53 NA NA 6.67 13.33 0.00 NA NA 0.00 NA NA 7.69 NA NA NA 7.69 NA 13.64 5.26 NA NA NA NA NA NA NA NA 13.04 K jcn_only_AA Cnx99A,I_chr3R_25142581_25142644,I_chr3R_25144335_25145173,I_chr3R_25145243_25145309,I_chr3R_25145256_25145426 chr3R - chr3R_25142581_25142644 chr3R_25142583_25142644 chr3R_25142645_25142744;chr3R_25142481_25142580 100.00 100.00 100.00 99.75 100.00 99.80 100.00 100.00 99.91 100.00 100.00 100.00 100.00 100.00 100.00 99.84 99.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.61 100.00 99.53 100.00 99.84 100.00 100.00 99.88 100.00 99.61 99.82 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.45 100.00 99.77 100.00 99.64 100.00 100.00 99.39 100.00 100.00 99.78 99.78 99.74 K intron_retention CG2247 chrX - chrX_11503341_11503434 chrX_11503340_11503341;chrX_11503434_11503435 chrX_11502738_11503340;chrX_11503435_11503542 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 2.08 NA 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 4.76 0.00 NA 0.00 0.00 NA NA NA NA 0.00 0.00 NA 2.38 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA K intron_retention I_chr3L_3223943_3224313,CG11505 chr3L + chr3L_3232240_3232297 chr3L_3232239_3232240;chr3L_3232297_3232298 chr3L_3231909_3232239;chr3L_3232298_3232406 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.77 0.00 0.00 6.56 24.32 10.00 0.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K alternative_donor lid,I_chr2L_5996532_5997682,I_chr2L_5996532_5998072,I_chr2L_5996532_5999224 chr2L - chr2L_5996532_5999409 chr2L_5996532_5999297 chr2L_5996432_5996531;chr2L_5999410_5999478 95.83 100.00 100.00 97.37 94.44 96.43 97.37 90.70 92.59 94.12 100.00 96.15 95.24 96.67 96.43 92.59 91.30 92.86 97.06 97.83 93.75 88.46 90.32 95.65 100.00 96.67 95.24 100.00 93.75 93.75 95.24 87.50 90.91 100.00 88.89 94.74 95.24 94.12 100.00 100.00 100.00 100.00 95.83 94.44 100.00 91.67 100.00 100.00 100.00 100.00 84.62 88.89 100.00 100.00 97.22 88.89 100.00 93.75 K alternative_donor CG4901,RI_chr2L_10212268_10212326,RI_chr2L_10212403_10212451 chr2L + chr2L_10212264_10212326 chr2L_10212268_10212326 chr2L_10212327_10212402;chr2L_10212168_10212263 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD AnnIX chr3R + chr3R_16891008_16893167;chr3R_16891137_16893167;chr3R_16891124_16893167 chr3R_16891033_16893167 chr3R_16893168_16893221;chr3R_16890951_16891007 34.54 38.46 28.17 22.25 41.90 26.72 29.45 24.09 39.48 64.29 22.49 35.42 39.02 32.54 26.89 36.47 31.03 35.94 26.04 30.68 34.54 50.35 60.19 69.89 56.00 24.24 49.21 51.02 33.33 26.32 25.59 30.49 16.13 24.70 40.16 36.36 63.16 65.67 67.86 32.50 15.09 28.67 22.32 30.77 22.29 37.25 66.36 17.14 20.35 52.33 53.74 57.75 40.68 59.43 23.59 53.54 56.47 14.86 K intron_retention par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,I_chr2R_15350149_15350210,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350285_15351846 chr2R_15350284_15350285;chr2R_15351846_15351847 chr2R_15350273_15350284;chr2R_15351847_15351914 94.25 NA NA 71.43 NA NA 92.86 93.33 95.83 NA NA 91.67 100.00 91.67 100.00 93.75 90.91 NA 88.89 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA 88.89 100.00 NA NA 94.74 NA NA NA NA NA NA NA 100.00 80.00 NA NA NA NA NA 94.74 NA NA NA NA NA 80.00 NA NA NA K intron_retention Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2612004_2629140 chr3L_2612003_2612004;chr3L_2629140_2629141 chr3L_2611788_2612003;chr3L_2629141_2629526 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.12 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31219 chr3R + chr3R_15476822_15476983 chr3R_15476821_15476822;chr3R_15476983_15476984 chr3R_15476740_15476821;chr3R_15476984_15477551 1.27 2.20 1.30 6.67 2.11 1.09 1.42 2.27 2.77 0.00 0.71 2.55 0.00 0.77 1.79 1.36 0.98 1.53 1.48 1.26 1.74 3.70 0.76 1.40 0.00 1.27 4.83 0.69 3.70 0.00 2.35 0.00 0.00 2.87 1.25 0.00 1.01 1.08 1.08 2.41 0.00 1.52 2.00 1.10 3.28 1.01 0.00 1.92 1.58 1.05 2.76 0.00 0.00 3.61 0.71 2.00 0.34 0.00 K intron_retention Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19563512_19564543 chr2R_19563511_19563512;chr2R_19564543_19564544 chr2R_19563412_19563511;chr2R_19564544_19564570 6.00 6.35 11.43 5.26 6.67 6.06 11.65 6.25 6.85 0.00 1.75 6.40 4.00 7.89 8.11 11.76 6.25 6.06 6.15 5.26 3.23 10.19 5.63 10.94 5.26 7.04 11.43 23.53 0.00 3.77 7.14 2.70 7.02 2.83 9.09 5.00 5.41 3.77 5.88 7.34 8.89 4.14 1.82 8.22 5.06 3.85 0.00 4.62 6.92 0.00 4.76 2.13 6.00 5.41 6.02 7.02 2.67 3.17 K alternative_acceptor Pcf11,RI_chr2R_10753287_10754988 chr2R - chr2R_10753272_10754988;chr2R_10753287_10754988;chr2R_10753557_10754988;chr2R_10753581_10754988 chr2R_10753239_10754988 chr2R_10754989_10755088;chr2R_10753187_10753238 71.43 76.92 89.47 66.67 87.50 79.17 63.64 68.18 68.57 80.00 80.00 75.00 63.64 80.00 66.67 57.14 75.00 83.33 89.47 71.43 72.73 54.84 72.22 85.00 60.00 75.00 76.00 71.43 65.00 60.00 73.68 90.00 66.67 66.67 50.00 43.75 75.61 79.17 68.00 55.88 33.33 70.59 83.33 71.43 72.73 64.29 76.92 70.59 70.97 80.00 66.67 70.00 50.00 100.00 76.47 87.50 NA 62.50 K intron_retention CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25318474_25319004 chr3R_25318473_25318474;chr3R_25319004_25319005 chr3R_25318374_25318473;chr3R_25319005_25319071 53.59 NA 60.00 50.00 NA 60.00 53.33 50.00 55.00 NA NA 63.16 NA NA 50.00 62.50 NA NA NA 63.16 NA 19.05 45.00 50.00 NA NA 66.67 NA 35.29 NA 50.00 NA NA NA NA 53.85 61.90 NA 41.18 76.47 NA 63.16 NA NA NA 33.33 42.86 41.67 62.50 NA 46.67 NA NA 60.00 58.33 NA NA NA K alternative_donor CG8446 chr2R + chr2R_12084078_12084196 chr2R_12084108_12084196 chr2R_12084197_12084416;chr2R_12083895_12084077 45.95 44.93 52.38 35.53 45.95 63.04 49.15 41.94 55.67 41.03 46.51 55.56 48.72 55.81 58.49 45.10 48.48 49.02 61.76 47.87 43.48 46.67 38.10 35.92 35.29 58.33 50.00 35.85 57.89 40.74 62.50 47.83 32.26 54.55 42.22 42.86 40.28 40.00 44.58 26.14 45.95 52.00 55.26 38.18 44.44 43.18 42.86 56.41 67.14 48.86 44.30 50.00 43.68 41.57 56.36 45.00 42.45 40.30 K intron_retention CG30497,I_chr2R_3629426_3669231,I_chr2R_3641074_3665979 chr2R - chr2R_3667391_3669231 chr2R_3667390_3667391;chr2R_3669231_3669232 chr2R_3665980_3667390;chr2R_3669232_3669331 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 4.17 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 3.33 NA 0.00 0.00 5.88 NA NA 0.00 NA 0.00 0.00 4.55 0.00 NA NA 0.00 NA NA NA K intron_retention Gbeta13F,I_chrX_15754284_15755184,RI_chrX_15754356_15755268,I_chrX_15754356_15755409,RI_chrX_15755345_15755409 chrX + chrX_15755345_15755409 chrX_15755344_15755345;chrX_15755409_15755410 chrX_15755269_15755344;chrX_15755410_15755509 85.71 88.46 88.00 93.62 74.07 80.00 67.92 90.00 85.71 84.21 83.33 85.57 86.36 87.23 82.76 97.14 87.50 96.00 93.75 87.32 93.75 50.00 85.71 74.07 82.35 96.43 92.59 77.78 92.86 88.46 85.29 83.33 91.11 84.21 87.50 97.37 90.00 78.95 91.67 69.23 82.61 89.23 81.63 81.82 NA 76.92 85.00 77.78 83.58 92.31 78.79 68.97 100.00 90.00 86.84 93.33 71.43 83.33 K multi_cassette CG2316,I_chr4_208796_210623,I_chr4_209150_214298,I_chr4_209369_210623,I_chr4_209875_210055,I_chr4_209875_210628,I_chr4_209875_213969,RI_chr4_209875_214450,I_chr4_210688_211303,RI_chr4_210688_211927,I_chr4_210688_213991,I_chr4_210688_214019,I_chr4_210688_214049,RI_chr4_210688_214450 chr4 - chr4_208796_210623 chr4_208796_208855;chr4_208996_209050;chr4_209150_210623 chr4_208856_208995;chr4_209051_209149 chr4_208696_208795;chr4_210624_210636 100.00 100.00 100.00 100.00 95.83 100.00 98.08 100.00 100.00 100.00 100.00 98.25 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention sbb,I_chr2R_14175833_14176064,I_chr2R_14175833_14176196,I_chr2R_14175894_14175951,I_chr2R_14175894_14176196,I_chr2R_14193641_14243004,I_chr2R_14243561_14244715 chr2R - chr2R_14175894_14177039 chr2R_14175893_14175894;chr2R_14177039_14177040 chr2R_14175794_14175893;chr2R_14177040_14177355 19.46 18.75 21.05 24.24 15.00 10.53 16.00 13.04 8.57 NA 22.22 17.50 20.00 12.50 16.67 16.00 0.00 12.50 14.81 11.63 25.00 23.08 15.00 26.09 NA 14.29 36.84 NA 22.22 22.22 6.25 NA 20.83 8.82 NA 26.32 21.05 20.00 38.10 25.00 35.71 16.13 20.00 16.67 41.67 NA 26.67 14.29 18.92 54.55 29.41 18.75 NA NA 23.08 33.33 NA 12.50 K intron_retention Pur-alpha,I_chr4_581447_585166 chr4 + chr4_581447_584986 chr4_581446_581447;chr4_584986_584987 chr4_581366_581446;chr4_584987_585105 6.67 NA NA NA NA NA 7.14 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA K intron_retention CG5050 chr2L + chr2L_17453438_17453514 chr2L_17453437_17453438;chr2L_17453514_17453515 chr2L_17453268_17453437;chr2L_17453515_17453724 3.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention E2f,I_chr3R_17452573_17458606,R_chr3R_17452574_17485937,CG6353 chr3R - chr3R_17452573_17458645 chr3R_17452572_17452573;chr3R_17458645_17458646 chr3R_17452474_17452572;chr3R_17458646_17458706 53.85 53.85 70.00 68.18 47.62 62.96 58.93 56.58 45.45 NA 68.42 62.26 61.29 56.10 53.33 65.15 63.64 50.00 56.86 46.25 61.90 29.73 31.03 56.25 58.33 57.89 55.56 28.57 62.50 31.43 57.58 50.00 42.22 54.29 58.82 78.95 NA 38.46 46.15 62.50 51.43 58.00 67.86 46.15 52.63 40.54 33.33 50.94 54.32 NA 46.43 38.89 45.45 33.33 52.78 43.75 NA 50.00 K cassette Rbp2,I_chrX_16343528_16343906 chrX + chrX_16345593_16345951 chrX_16345593_16345734;chrX_16345825_16345951 chrX_16345735_16345824 chrX_16345308_16345592;chrX_16345952_16346631 1.00 0.45 0.83 6.00 1.90 1.65 3.60 1.43 0.68 1.00 16.98 0.90 12.50 1.04 0.00 1.25 2.70 0.79 3.37 2.35 9.38 2.82 1.51 0.78 0.61 0.88 2.38 6.99 0.44 0.97 0.00 0.65 1.63 0.61 0.53 0.47 1.55 0.43 0.74 1.97 1.11 0.89 1.03 1.33 0.45 0.86 1.30 1.68 0.30 2.29 0.99 0.91 0.00 0.64 1.46 0.72 1.32 0.33 K jcn_only_AD sd,noncoding_23930,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15706568_15707633;chrX_15706472_15707633 chrX_15706564_15707633 chrX_15707634_15707635;chrX_15706468_15706471 49.69 NA NA NA NA NA NA NA 56.52 NA NA NA NA NA NA NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD l(2)08717 chr2R - chr2R_14686769_14689522 chr2R_14686769_14687299 chr2R_14686578_14686768;chr2R_14689523_14689898 1.89 0.00 1.89 0.00 5.26 0.00 0.63 4.46 0.00 4.88 1.96 2.63 0.00 2.27 4.00 2.13 0.00 4.76 0.00 0.86 0.00 8.33 5.00 0.00 2.63 1.85 5.66 0.00 15.28 2.56 0.00 10.00 6.38 1.14 2.56 0.00 3.03 0.00 3.45 1.23 5.66 2.13 2.50 0.00 6.82 5.26 0.00 5.19 1.41 2.38 1.85 0.00 0.00 0.00 0.00 0.00 2.17 0.00 K jcn_only_AD Dsp1,I_chrX_16231287_16231413 chrX + chrX_16228273_16228333;chrX_16227804_16228333;chrX_16227677_16228333;chrX_16227797_16228333 chrX_16227752_16228333 chrX_16228334_16228446;chrX_16227667_16227676 0.00 NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG7843,I_chr2R_1972736_1972822 chr2R - chr2R_1968540_1969240 chr2R_1968921_1969240 chr2R_1969241_1969345;chr2R_1968340_1968539 45.26 46.48 52.73 40.00 43.75 46.51 39.22 53.41 47.92 46.15 51.85 50.50 59.42 46.43 46.03 73.91 43.14 52.08 54.84 45.26 48.98 44.44 38.10 36.27 36.92 37.10 48.10 46.67 36.76 34.67 53.54 34.09 40.24 56.98 49.12 28.07 36.17 34.92 33.04 48.08 46.25 52.59 55.56 45.21 32.00 35.00 38.18 34.58 57.89 35.78 43.75 52.08 37.66 38.20 53.85 45.83 44.07 33.57 K intron_retention S chr2L - chr2L_1052266_1052330 chr2L_1052265_1052266;chr2L_1052330_1052331 chr2L_1051414_1052265;chr2L_1052331_1052495 0.00 0.00 0.00 2.60 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.57 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG10026 chr2L + chr2L_19455858_19456408 chr2L_19456184_19456408 chr2L_19456409_19456568;chr2L_19455678_19455857 75.00 75.00 72.73 69.23 50.00 66.67 69.23 74.07 62.50 NA 83.33 68.42 63.16 91.67 78.57 94.74 62.50 77.78 90.91 62.07 80.00 NA 70.00 66.67 100.00 83.33 88.89 NA 50.00 80.00 63.64 100.00 80.00 85.00 NA 83.33 88.89 85.71 43.75 92.31 NA 65.38 60.00 58.33 NA 50.00 54.55 83.33 80.00 87.50 87.50 71.43 55.56 71.43 71.43 75.00 87.50 100.00 K intron_retention CG3764 chr3L - chr3L_16989047_16989114 chr3L_16989046_16989047;chr3L_16989114_16989115 chr3L_16988777_16989046;chr3L_16989115_16991284 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 1.92 11.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 K intron_retention Mlf,noncoding_7111,CEI_chr2R_11826763_11827279 chr2R - chr2R_11825773_11825951 chr2R_11825772_11825773;chr2R_11825951_11825952 chr2R_11825620_11825772;chr2R_11825952_11826483 42.86 NA NA 22.22 NA NA NA 46.15 69.23 26.67 30.77 42.86 30.77 NA NA NA NA NA NA 57.14 NA 70.00 NA NA NA NA 36.36 43.75 73.68 NA NA NA 29.41 NA NA NA NA NA NA 41.67 36.36 46.15 NA NA 19.05 60.00 NA 52.94 66.67 NA NA NA NA NA NA NA NA 41.67 K intron_retention VhaM9_7-2,I_chr3L_21533183_21533251,RI_chr3L_21533183_21533368,I_chr3L_21533305_21533368 chr3L + chr3L_21533183_21533252 chr3L_21533182_21533183;chr3L_21533252_21533253 chr3L_21533088_21533182;chr3L_21533253_21533300 5.00 2.84 2.93 3.51 5.08 5.24 7.84 4.39 5.56 6.41 6.18 4.74 5.26 4.71 4.09 3.90 5.78 4.35 4.67 5.44 4.87 25.74 4.80 3.53 8.57 9.18 5.82 7.41 25.60 3.49 6.67 3.42 3.51 4.32 3.55 7.56 5.04 4.60 5.38 4.41 14.93 3.46 4.27 5.76 6.67 4.67 3.00 9.68 5.06 5.98 3.94 6.33 2.95 3.03 5.00 5.06 3.11 7.92 K intron_retention Mbs,I_chr3L_16045251_16046108,I_chr3L_16057100_16057329 chr3L + chr3L_16057418_16058147 chr3L_16057417_16057418;chr3L_16058147_16058148 chr3L_16057330_16057417;chr3L_16058148_16058525 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 3.03 3.12 0.00 2.17 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention JhI-21,I_chr2L_12055360_12055714 chr2L - chr2L_12055334_12055901 chr2L_12055333_12055334;chr2L_12055901_12055902 chr2L_12055328_12055333;chr2L_12055902_12055978 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 NA K intron_retention CG34123,RI_chr2R_11160894_11162043,I_chr2R_11167854_11168411 chr2R - chr2R_11167430_11168411 chr2R_11167429_11167430;chr2R_11168411_11168412 chr2R_11167273_11167429;chr2R_11168412_11168511 4.96 10.00 0.00 0.00 0.00 10.53 25.00 9.09 5.77 NA NA 15.38 0.00 5.56 12.90 7.14 0.00 0.00 0.00 12.50 13.33 20.00 3.23 3.57 11.76 0.00 6.45 NA NA 0.00 3.85 NA 0.00 3.85 0.00 12.00 5.26 19.05 10.81 7.14 NA 4.17 NA 0.00 NA NA NA NA 4.65 NA 3.85 NA NA NA 6.67 NA 0.00 NA K intron_retention trbd chr3R - chr3R_5535271_5536202 chr3R_5535270_5535271;chr3R_5536202_5536203 chr3R_5535110_5535270;chr3R_5536203_5536794 19.14 17.65 11.76 36.36 12.50 NA 8.33 23.08 20.83 NA 26.67 14.29 6.25 13.33 9.09 26.09 13.33 41.18 12.00 21.95 31.58 68.18 24.14 19.05 NA 0.00 14.29 NA 22.22 31.25 25.00 NA 15.38 18.52 17.65 10.53 29.17 20.00 19.23 17.65 30.77 22.22 NA 10.53 NA 12.50 35.29 NA 25.93 20.00 17.65 16.67 NA 6.67 22.22 NA 22.22 NA K intron_retention CG7565 chr3L - chr3L_8082363_8082424 chr3L_8082362_8082363;chr3L_8082424_8082425 chr3L_8082172_8082362;chr3L_8082425_8082533 0.00 0.00 0.00 2.70 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 0.00 NA 6.25 0.00 NA NA NA NA NA 5.56 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 3.85 NA 0.00 NA NA NA NA NA NA 0.00 K alternative_acceptor G-salpha60A chr2R + chr2R_19833785_19833969 chr2R_19833785_19833960 chr2R_19833660_19833784;chr2R_19833970_19834043 13.33 16.00 11.54 11.50 13.64 10.42 8.63 12.61 14.91 13.33 12.96 11.30 9.59 11.54 14.06 11.65 12.68 16.33 12.50 8.84 21.15 9.30 18.37 19.15 12.20 16.33 19.15 18.92 9.80 18.52 6.33 11.90 15.31 14.29 15.38 18.37 20.00 15.38 10.00 12.00 12.33 11.02 14.29 15.58 12.50 17.44 12.99 9.46 13.49 12.86 19.15 20.51 14.29 20.45 11.39 13.46 21.79 9.70 K alternative_last_exon CG34383,RI_chr3R_9587500_9588422 chr3R + chr3R_9586085_9588422;chr3R_9586085_9586407 chr3R_9586085_9587029 chr3R_9588423_9590485;chr3R_9586408_9586663 chr3R_9587030_9587536 chr3R_9586009_9586084 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA K intron_retention CG32394,RI_chr3L_6731199_6731803,dikar chr3L - chr3L_6731199_6731803 chr3L_6731198_6731199;chr3L_6731803_6731804 chr3L_6731099_6731198;chr3L_6731804_6731903 71.43 NA NA NA NA NA NA NA NA NA NA 75.00 100.00 NA NA NA NA NA NA 100.00 NA 47.06 NA 77.78 NA NA NA 64.29 54.55 NA NA NA 70.00 NA NA NA NA NA NA 71.43 NA NA NA 66.67 NA 88.89 NA 53.33 NA NA 100.00 NA NA NA NA NA NA NA N alternative_donor HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13165623_13166434 chrX_13165623_13166422 chrX_13165515_13165622;chrX_13166435_13166489 7.14 NA NA 25.00 NA NA 3.23 21.62 6.67 NA NA 5.26 NA 26.32 7.14 23.08 NA NA 16.67 5.56 NA NA NA NA NA NA NA NA 7.69 NA NA NA NA 12.00 12.50 NA NA NA NA 4.17 NA 12.00 0.00 0.00 NA NA NA 6.25 6.67 NA 0.00 NA NA NA 8.00 NA NA NA K intron_retention chinmo,cpb,mRpL48 chr2L + chr2L_1705281_1705399 chr2L_1705280_1705281;chr2L_1705399_1705400 chr2L_1705215_1705280;chr2L_1705400_1707011 19.26 NA NA 65.00 NA 12.50 28.57 20.00 18.52 NA NA 0.00 NA 29.41 20.00 NA NA 77.78 NA 20.00 NA NA 0.00 NA NA 13.33 NA 80.00 NA NA NA NA NA 21.05 13.33 NA 12.50 12.50 7.69 20.00 NA 15.38 NA NA 20.00 22.22 12.50 NA 18.18 NA 0.00 NA NA NA 0.00 NA 26.67 20.00 K intron_retention CG2003 chr3R + chr3R_27812850_27814973 chr3R_27812849_27812850;chr3R_27814973_27814974 chr3R_27812838_27812849;chr3R_27814974_27815051 2.70 2.86 5.56 8.33 0.00 3.23 3.08 2.50 2.83 7.69 3.70 4.48 1.59 7.50 5.26 2.56 0.00 0.00 2.38 4.17 8.00 NA 3.33 0.00 NA 3.03 6.25 NA NA 0.00 0.00 0.00 0.00 2.70 5.71 5.26 0.00 0.00 0.00 5.13 3.85 2.70 6.45 0.00 0.00 2.44 0.00 3.70 2.91 4.17 2.70 0.00 0.00 NA 0.00 0.00 0.00 0.00 K alternative_acceptor RI_chrX_502548_513324,CG13366,I_chrX_508729_508806,I_chrX_509497_513324,I_chrX_509727_511407,I_chrX_509727_511477,noncoding_21186,I_chrX_509834_511407,CRE_chrX_509851_511307,I_chrX_510004_511307,I_chrX_510004_511407,I_chrX_513176_513324,I_chrX_513519_513631 chrX - chrX_510004_511407;chrX_509727_511407 chrX_509834_511407 chrX_511408_511507;chrX_509715_509726 42.86 NA NA 25.00 NA NA NA 57.14 58.33 NA NA NA NA NA NA 40.00 NA NA 80.00 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 57.14 NA NA NA NA NA NA NA 42.86 NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA K intron_retention TSG101 chr3L + chr3L_16835977_16836255 chr3L_16835976_16835977;chr3L_16836255_16836256 chr3L_16835892_16835976;chr3L_16836256_16836333 97.50 97.30 97.73 98.99 97.30 100.00 98.41 97.65 97.98 90.48 100.00 96.97 100.00 100.00 97.83 93.65 100.00 100.00 97.96 96.12 100.00 94.55 97.50 90.24 96.43 100.00 97.92 96.97 96.77 94.74 91.03 100.00 87.50 98.51 96.15 92.86 100.00 96.77 97.73 96.83 96.30 96.43 100.00 100.00 89.74 97.50 97.62 96.88 97.30 93.62 100.00 96.67 100.00 96.15 98.21 90.24 100.00 98.36 K intron_retention CG8790 chr3R + chr3R_9193884_9193973 chr3R_9193883_9193884;chr3R_9193973_9193974 chr3R_9193461_9193883;chr3R_9193974_9194816 0.00 0.00 0.00 0.00 0.00 0.94 0.47 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD chic,RI_chr2L_5976783_5980950,I_chr2L_5979705_5979818,I_chr2L_5979705_5979941,RI_chr2L_5979705_5979951,I_chr2L_5979705_5979953,I_chr2L_5979705_5980025,I_chr2L_5979705_5980213,I_chr2L_5979705_5980370,I_chr2L_5979705_5980558,I_chr2L_5979705_5980632,I_chr2L_5979705_5980639,RI_chr2L_5979705_5980734 chr2L - chr2L_5979705_5980208;chr2L_5979705_5979939 chr2L_5979705_5979959 chr2L_5979605_5979704;chr2L_5980209_5980475 0.76 0.92 0.78 0.68 1.18 0.86 0.58 0.70 0.82 0.71 0.26 0.87 0.74 0.55 1.61 1.17 0.76 0.79 1.07 0.93 0.84 0.84 0.67 0.95 0.11 0.50 0.64 0.66 1.77 0.30 1.03 0.35 1.00 0.73 0.68 1.22 0.54 0.32 1.35 0.37 0.77 0.84 0.82 0.92 0.57 0.65 0.84 0.62 0.74 0.63 0.60 0.91 0.71 0.81 0.98 0.99 0.67 0.63 K alternative_donor Pk61C,CE_chr3L_129889_141769,I_chr3L_132531_133824,I_chr3L_133962_134014 chr3L + chr3L_132056_135457;chr3L_132531_135457;chr3L_131934_135457 chr3L_131959_135457 chr3L_135458_135842;chr3L_131849_131933 0.00 0.00 0.00 6.67 0.00 8.33 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 6.25 8.33 0.00 11.11 0.00 7.69 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor east,CR_chrX_1912038_1912737 chrX + chrX_1912972_1913090 chrX_1912972_1913072 chrX_1912738_1912971;chrX_1913091_1913539 0.00 0.00 2.70 4.35 0.00 3.85 2.63 0.00 1.32 0.00 0.00 1.59 0.00 0.00 2.13 2.50 0.00 0.00 2.70 0.00 0.00 2.70 2.33 2.13 3.57 0.00 1.89 14.29 6.67 0.00 2.44 NA 0.00 1.69 3.45 3.12 0.00 0.00 0.00 0.00 7.14 1.43 2.70 0.00 0.00 4.17 0.00 0.00 2.63 3.23 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 K intron_retention Aph-4 chr3R + chr3R_26877647_26877706 chr3R_26877646_26877647;chr3R_26877706_26877707 chr3R_26876971_26877646;chr3R_26877707_26878088 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.38 NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor Dyb,I_chr2R_8338101_8339173,I_chr2R_8348603_8351844 chr2R + chr2R_8325077_8325151 chr2R_8325081_8325151 chr2R_8325152_8325395;chr2R_8325012_8325076 80.00 NA NA 85.71 77.78 NA 80.00 78.57 73.08 NA 77.78 90.91 NA 66.67 87.50 69.23 NA 90.00 69.23 85.71 NA NA 84.62 81.82 NA 87.50 80.00 NA NA NA 100.00 NA NA 80.00 NA NA NA NA 55.56 90.91 NA 80.00 NA NA NA NA NA NA 84.62 NA 55.56 88.89 NA NA 92.86 66.67 NA NA K jcn_only_AD CG1622,REI_chrX_13191277_13191339,RI_chrX_13191703_13191779,I_chrX_13191916_13192167,I_chrX_13192409_13192738,EI_chrX_13192857_13192928 chrX + chrX_13191685_13191779 chrX_13191703_13191779 chrX_13191780_13191847;chrX_13191617_13191684 3.58 5.42 3.70 4.51 2.94 5.41 4.26 2.97 2.69 5.26 2.56 2.08 3.57 2.22 10.17 3.70 3.70 10.71 2.44 3.58 6.67 2.76 2.40 2.42 2.97 2.70 2.21 5.26 9.51 3.08 26.09 4.80 4.74 1.96 1.48 5.75 4.07 3.41 3.19 2.36 4.71 4.01 0.00 3.88 5.64 4.34 3.91 5.46 4.05 4.46 3.58 2.82 0.85 4.61 3.03 3.28 2.11 3.51 K alternative_donor CG7081,I_chr3L_8332291_8332360,DNApol-alpha50 chr3L + chr3L_8332291_8332356 chr3L_8332305_8332356 chr3L_8332357_8332424;chr3L_8332275_8332290 2.63 NA 0.00 3.57 NA NA 2.94 7.14 2.00 NA NA 8.00 NA 0.00 0.00 2.63 NA NA 3.45 0.00 NA 0.00 NA NA NA 5.88 NA NA NA NA 7.14 NA 5.56 3.57 NA NA NA NA 0.00 0.00 6.67 4.35 NA 0.00 NA 5.56 NA 0.00 5.26 NA 0.00 NA NA NA 0.00 0.00 0.00 3.23 K intron_retention olf186-F,CG30323 chr2R + chr2R_13738966_13745146 chr2R_13738965_13738966;chr2R_13745146_13745147 chr2R_13738563_13738965;chr2R_13745147_13745244 50.94 53.70 61.54 53.19 47.62 67.86 52.17 48.84 53.77 37.50 72.73 69.23 57.14 73.33 57.14 61.54 54.84 57.14 57.14 66.67 67.86 54.84 45.05 39.13 37.50 42.86 50.94 47.37 44.23 50.85 55.26 45.83 47.06 75.00 50.00 60.78 45.24 34.29 48.65 49.23 52.00 53.68 47.37 47.62 34.92 47.06 52.17 54.55 43.75 39.68 62.50 44.00 59.46 46.15 53.19 36.17 44.19 48.72 K cassette Chro,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22871119_22871733 chr3L_22871119_22871225;chr3L_22871326_22871733 chr3L_22871226_22871325 chr3L_22871037_22871118;chr3L_22871734_22871779 15.07 8.33 6.25 13.04 NA 11.76 12.50 16.67 17.65 NA NA 15.38 12.50 6.25 20.00 23.53 NA NA 18.75 12.50 NA NA 12.50 NA NA 18.75 40.00 NA 14.29 25.00 8.33 NA NA 15.00 20.00 14.29 NA NA NA 26.67 14.29 12.50 36.36 18.18 NA 10.53 NA 15.15 17.86 18.18 13.64 14.29 NA 25.00 15.00 15.38 NA 25.00 K jcn_only_AD Nedd4,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17524136_17531761 chr3L_17527663_17531761 chr3L_17531762_17531844 50.00 51.95 40.58 57.55 32.00 51.16 47.11 60.15 42.99 45.83 43.40 46.46 47.76 52.50 45.92 51.06 38.57 47.30 48.35 48.54 50.68 53.75 60.34 44.32 49.32 35.82 67.37 47.83 73.68 53.52 44.29 50.00 60.80 49.18 53.03 66.67 39.50 36.11 44.64 55.71 50.00 52.78 52.83 52.38 41.94 61.02 41.46 56.36 57.25 65.08 60.22 44.62 58.14 43.59 40.00 55.81 41.18 54.10 K jcn_only_AD CG8090,I_chr2R_11087088_11087162 chr2R - chr2R_11087809_11087894 chr2R_11087809_11087875 chr2R_11087624_11087808;chr2R_11087895_11088101 100.00 100.00 100.00 100.00 95.00 100.00 97.92 100.00 100.00 NA 95.65 97.92 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 96.55 100.00 97.37 95.35 NA NA 87.50 95.00 95.24 96.30 95.45 NA 93.33 100.00 NA NA 90.00 100.00 100.00 100.00 NA 100.00 100.00 95.65 NA 100.00 100.00 NA 97.62 100.00 97.50 95.24 NA 95.24 96.43 97.30 100.00 NA K intron_retention CG7609,ATPsyn-gamma,I_chr3R_25574492_25574541 chr3R - chr3R_25574492_25574541 chr3R_25574491_25574492;chr3R_25574541_25574542 chr3R_25574392_25574491;chr3R_25574542_25574564 93.47 96.77 90.41 92.17 93.33 89.23 87.84 92.24 93.60 92.31 85.71 92.22 96.00 94.34 94.79 94.29 98.18 91.04 91.46 93.22 92.73 95.65 70.00 88.89 77.78 95.60 96.00 100.00 100.00 100.00 92.68 93.65 98.90 96.08 95.45 100.00 76.47 90.91 61.11 96.74 96.43 93.23 92.45 95.83 99.07 98.25 90.00 100.00 95.60 70.00 80.00 80.00 96.97 NA 95.45 84.21 85.19 96.72 K intron_retention CG11980 chr3R + chr3R_4830174_4830230 chr3R_4830173_4830174;chr3R_4830230_4830231 chr3R_4829864_4830173;chr3R_4830231_4831070 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Eph,I_chr4_631523_634240,I_chr4_632065_634240,I_chr4_639690_640473,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_632065_632352;chr4_632065_634240 chr4_632065_632138;chr4_632282_632352,chr4_632282_634240 chr4_632139_632281 chr4_631965_632064;chr4_634241_634340 100.00 100.00 95.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 95.83 100.00 97.92 100.00 100.00 96.88 97.37 100.00 NA 95.83 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 83.33 83.33 97.73 100.00 93.75 100.00 91.67 91.67 100.00 100.00 97.30 100.00 100.00 NA 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention cryptocephal,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21312209_21318126 chr2L_21312208_21312209;chr2L_21318126_21318127 chr2L_21312125_21312208;chr2L_21318127_21318416 0.13 0.00 0.00 0.23 0.00 0.00 0.72 0.12 0.22 0.50 0.00 0.21 0.00 0.33 0.14 0.25 0.28 0.00 0.00 0.17 0.20 0.38 0.23 0.00 0.20 0.00 0.28 1.18 0.72 0.44 0.00 0.00 0.00 0.13 0.00 0.31 0.45 0.24 0.00 0.30 0.00 0.21 0.00 0.24 0.00 0.00 0.21 0.00 0.27 0.00 0.16 0.21 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Nurf-38 chr2R - chr2R_20447088_20447145 chr2R_20447104_20447145 chr2R_20447146_20447297;chr2R_20446978_20447087 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.58 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.49 0.00 0.00 0.00 0.21 0.22 0.21 0.22 1.63 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.21 0.25 0.35 0.23 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD skd chr3L - chr3L_21018649_21020395;chr3L_21018649_21020285;chr3L_21018649_21019229 chr3L_21018649_21020239 chr3L_21018052_21018648;chr3L_21020396_21020501 12.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N jcn_only_AA I_chrX_16309561_16309689,hang,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16323441_16323563;chrX_16323441_16323548 chrX_16323441_16324653 chrX_16323093_16323440;chrX_16324654_16324797 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 79.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG10188 chr2L - chr2L_19508262_19508325 chr2L_19508266_19508325 chr2L_19508326_19508760;chr2L_19507490_19508261 83.33 66.67 NA NA NA NA 87.50 72.73 90.91 NA NA 77.78 NA NA NA 66.67 NA NA NA 69.23 NA 91.67 100.00 NA NA NA NA NA 88.89 NA NA NA 66.67 72.73 NA 100.00 NA NA NA 87.50 66.67 83.33 NA NA NA NA NA 90.91 75.00 NA 100.00 NA NA NA NA NA NA NA K alternative_last_exon stj chr2R + chr2R_9703154_9703707 chr2R_9703154_9703540 chr2R_9703708_9703818 chr2R_9703541_9703609 chr2R_9703060_9703153 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Dgp-1,I_chr2R_14058825_14059758,I_chr2R_14058954_14059942 chr2R - chr2R_14057763_14057819 chr2R_14057762_14057763;chr2R_14057819_14057820 chr2R_14056046_14057762;chr2R_14057820_14058162 2.49 2.21 3.16 3.02 1.53 1.99 1.36 3.29 2.74 2.31 5.88 3.84 4.35 3.10 2.70 2.56 1.64 2.47 0.00 1.58 2.92 2.71 2.76 3.52 1.61 1.97 7.73 8.19 2.85 2.80 0.69 1.38 1.81 2.41 3.37 4.02 3.11 2.12 2.34 3.58 3.77 2.54 3.81 1.52 2.49 2.54 2.18 1.39 2.23 2.04 3.12 4.67 1.65 1.87 1.38 1.67 1.42 1.08 N alternative_donor CG11200 chr2R - chr2R_16194142_16196065 chr2R_16194142_16195651 chr2R_16193920_16194141;chr2R_16196066_16196078 14.29 15.38 16.67 12.90 10.00 7.14 NA 10.71 13.04 NA 100.00 11.43 25.00 15.00 22.22 16.13 NA 25.00 15.00 10.81 23.08 NA NA 14.29 23.08 7.69 10.53 NA 9.09 NA 17.65 NA NA 12.00 22.22 35.71 8.33 NA 14.29 8.57 7.69 10.00 NA NA NA 19.05 NA 8.70 20.51 4.76 15.00 13.33 14.29 23.08 15.00 15.79 NA 13.33 K jcn_only_AD CG8468 chr2R + chr2R_10107616_10108112;chr2R_10107651_10108112;chr2R_10107548_10108112 chr2R_10107621_10108112 chr2R_10108113_10108270;chr2R_10107405_10107547 2.17 2.65 2.17 2.80 0.92 4.71 3.95 2.38 3.62 0.00 1.49 2.51 3.08 1.65 1.76 3.08 1.86 2.44 2.49 2.05 4.76 2.35 2.85 2.60 2.60 3.33 1.59 0.00 0.76 0.29 1.40 1.08 0.55 3.32 1.15 2.44 2.40 2.78 1.45 1.35 2.72 1.20 1.35 2.54 0.57 0.00 3.95 1.00 2.72 6.59 1.08 1.22 0.00 1.02 2.86 1.23 2.70 0.00 K alternative_acceptor Hcf,I_chr4_384272_384649,I_chr4_391984_392875 chr4 + chr4_384266_384649 chr4_384266_384493 chr4_384172_384265;chr4_384650_384651 96.43 92.59 97.67 95.38 96.88 94.12 98.18 94.37 94.81 94.44 96.30 93.65 93.94 97.06 97.44 93.10 96.55 100.00 97.37 94.52 96.30 92.86 97.62 96.97 100.00 97.30 94.59 93.33 94.12 95.83 97.44 92.31 100.00 89.23 95.83 96.43 96.77 95.45 100.00 95.00 100.00 98.46 100.00 100.00 100.00 94.12 100.00 100.00 95.59 94.74 97.22 100.00 93.75 100.00 95.65 100.00 100.00 95.00 N alternative_donor tai,I_chr2L_9191814_9206231 chr2L + chr2L_9241270_9241375 chr2L_9241282_9241375 chr2L_9241376_9241549;chr2L_9239822_9241269 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.00 1.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.46 0.00 0.00 0.00 2.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_150069_150307;chr4_150069_150180;chr4_150069_150378;chr4_150069_150353;chr4_150069_150205 chr4_150069_150295 chr4_149969_150068;chr4_150379_150379 55.97 NA NA 57.89 66.67 42.86 56.10 59.26 48.91 NA NA 60.42 53.33 48.15 66.67 63.33 39.53 66.67 61.11 51.85 NA NA NA NA NA 46.15 NA NA NA NA 53.85 NA NA 55.84 NA NA NA NA NA NA NA 49.12 65.00 NA NA NA NA NA 53.42 NA NA NA NA NA 67.57 NA NA NA K intron_retention Rcd5 chr3L + chr3L_4041106_4041162 chr3L_4041105_4041106;chr3L_4041162_4041163 chr3L_4040967_4041105;chr3L_4041163_4041693 100.00 100.00 98.41 100.00 100.00 100.00 98.48 100.00 99.11 100.00 97.56 98.91 100.00 100.00 98.46 100.00 100.00 100.00 98.18 100.00 97.62 100.00 99.16 100.00 99.06 98.36 100.00 98.96 100.00 98.67 100.00 98.70 100.00 100.00 100.00 100.00 100.00 98.90 99.22 100.00 100.00 99.12 100.00 98.53 99.10 98.96 100.00 99.08 98.78 100.00 100.00 100.00 98.59 100.00 100.00 98.67 98.99 100.00 K intron_retention RhoGAPp190,I_chrX_17544272_17544863,I_chrX_17546225_17546531 chrX - chrX_17537281_17540552 chrX_17537280_17537281;chrX_17540552_17540553 chrX_17537059_17537280;chrX_17540553_17540618 0.00 NA 0.00 8.33 NA NA 21.74 0.00 0.00 NA 0.00 10.81 8.33 0.00 0.00 7.69 0.00 NA 0.00 0.00 0.00 NA 7.14 NA NA 0.00 0.00 NA NA NA 17.39 NA NA 5.56 NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 6.25 NA NA NA NA NA 12.50 NA NA NA K mutually_exclusive ens,I_chr3L_4130719_4131120 chr3L - chr3L_4127163_4128613,chr3L_4128974_4131120;chr3L_4127163_4130388,chr3L_4130644_4131120 chr3L_4127163_4129650,chr3L_4129792_4131120 chr3L_4128614_4128973;chr3L_4130389_4130643 chr3L_4129651_4129791 chr3L_4126989_4127162;chr3L_4131121_4131220 98.48 98.06 97.78 99.28 98.77 98.92 98.96 99.23 98.90 98.61 98.81 98.66 100.00 98.77 97.85 96.72 98.85 98.33 100.00 99.37 98.61 98.71 98.72 97.56 98.98 100.00 98.35 97.89 96.08 98.26 98.23 96.72 97.74 97.95 97.06 97.60 98.88 97.64 97.92 98.96 93.98 98.48 97.22 98.53 96.74 96.55 97.53 98.62 98.59 100.00 98.69 97.89 98.51 98.18 99.01 97.59 97.83 97.33 K intron_retention gem,I_chr2R_6015083_6015660,I_chr2R_6023178_6023252,I_chr2R_6023182_6023246 chr2R + chr2R_6023178_6023246 chr2R_6023177_6023178;chr2R_6023246_6023247 chr2R_6023110_6023177;chr2R_6023247_6023346 20.27 20.74 17.89 19.65 15.56 21.82 22.94 22.01 20.49 36.17 46.81 20.27 40.30 24.10 19.82 10.06 15.79 31.71 25.74 26.98 28.00 15.11 15.84 15.03 19.05 19.51 18.90 32.20 19.13 18.12 17.02 18.56 22.31 22.15 19.49 13.43 17.69 15.31 16.12 21.89 36.76 18.78 17.95 23.26 25.19 23.02 20.69 19.20 23.83 27.84 20.00 12.94 25.18 28.23 20.00 19.59 24.56 27.91 K alternative_acceptor CG6707 chr3L - chr3L_9891303_9891622 chr3L_9891567_9891622 chr3L_9891623_9891693;chr3L_9891029_9891302 10.53 12.82 10.53 12.35 3.57 11.43 12.66 9.21 6.34 9.68 4.17 11.86 8.33 13.33 6.25 12.77 4.08 10.81 8.33 9.33 3.70 19.30 12.24 6.52 13.33 21.62 11.76 10.53 20.93 9.68 18.18 4.35 14.29 8.45 15.00 18.52 7.32 8.33 9.68 6.41 11.54 8.33 8.00 11.90 5.88 10.71 12.12 14.81 8.86 10.81 14.29 5.00 7.69 25.00 9.80 13.64 9.26 9.30 K intron_retention ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13415881_13416126 chr2R_13415880_13415881;chr2R_13416126_13416127 chr2R_13415818_13415880;chr2R_13416127_13416357 0.00 2.17 2.86 0.00 6.25 0.00 2.70 4.17 1.96 0.00 0.00 5.88 0.00 3.85 0.00 8.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 3.17 0.00 0.00 1.08 0.00 0.00 8.82 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 6.45 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 K alternative_acceptor Cyp4p3 chr2R + chr2R_5130975_5131035 chr2R_5130975_5131026 chr2R_5130704_5130974;chr2R_5131036_5131244 91.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 91.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG42299,CG15643,I_chrX_15465519_15465586 chrX - chrX_15465519_15465596 chrX_15465519_15465586 chrX_15465419_15465518;chrX_15465597_15465686 8.16 NA NA NA NA NA 0.00 NA 8.33 NA NA 6.06 NA NA NA NA NA NA NA 11.76 NA NA NA 4.55 NA NA 8.00 NA NA 0.00 5.00 NA NA 13.04 NA NA 11.54 NA 16.00 2.86 NA 10.34 NA 4.35 NA NA NA 12.00 8.70 NA NA NA NA NA NA NA NA NA K intron_retention Pif1B,Pif1A,CG33191,noncoding_15414,CG33189,I_chr3R_4624232_4625183 chr3R - chr3R_4603664_4608007 chr3R_4603663_4603664;chr3R_4608007_4608008 chr3R_4601040_4603663;chr3R_4608008_4608106 35.48 28.00 47.83 44.00 35.71 47.06 39.13 50.00 38.00 NA 66.67 38.89 27.78 29.17 42.31 50.00 42.86 42.86 31.82 43.24 58.82 19.23 32.61 39.29 17.65 41.67 28.00 24.24 20.59 26.67 33.33 NA 30.00 34.15 36.36 28.21 32.14 36.36 31.25 21.15 36.36 45.45 26.67 13.64 32.00 43.75 39.13 11.11 29.79 51.43 34.00 47.37 23.08 61.90 31.03 35.48 45.95 26.09 K intron_retention CG1635,I_chr3R_27416864_27416939 chr3R + chr3R_27415009_27415067 chr3R_27415008_27415009;chr3R_27415067_27415068 chr3R_27414766_27415008;chr3R_27415068_27416112 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 3.45 N alternative_last_exon RpS16,RI_chr2R_18493796_18494013,I_chr2R_18494146_18494441,snoRNA:Psi28S-1175a,snoRNA:Psi28S-1175b,snoRNA:Psi28S-1175c,snoRNA:Or-aca1 chr2R + chr2R_18494554_18495982 chr2R_18494554_18495259 chr2R_18495983_18496123 chr2R_18495260_18495544 chr2R_18494439_18494553 99.95 99.98 99.95 99.95 99.90 99.95 99.90 99.92 99.93 99.97 99.94 99.95 99.94 99.94 99.93 99.92 99.93 99.91 99.89 99.94 99.92 99.86 99.97 99.97 100.00 99.92 99.98 99.91 99.98 99.96 99.95 99.95 99.97 99.93 99.98 99.98 99.99 99.98 99.98 99.81 99.94 99.92 99.93 99.91 99.94 99.98 99.99 99.95 99.90 100.00 99.97 99.97 99.95 99.99 99.92 99.98 99.98 99.96 K intron_retention CG1646,RI_chr3R_24638061_24638116,RI_chr3R_24638209_24638280,snoRNA:291,I_chr3R_24641816_24641874 chr3R + chr3R_24638209_24638426 chr3R_24638208_24638209;chr3R_24638426_24638427 chr3R_24638117_24638208;chr3R_24638427_24638567 1.15 0.00 2.63 1.12 4.00 1.28 4.26 0.00 2.63 0.00 0.00 2.05 6.25 0.00 0.00 0.00 6.45 0.00 0.00 1.15 0.00 4.11 0.00 2.06 0.00 1.00 2.83 1.79 3.49 1.02 1.03 2.06 0.80 0.00 3.96 1.80 0.00 0.00 1.71 2.45 1.32 1.52 2.13 1.32 0.00 2.14 0.97 0.89 2.08 4.00 1.96 0.00 0.00 0.00 0.00 0.00 1.41 1.50 K intron_retention P58IPK,CG8312 chr3R + chr3R_5413359_5413718 chr3R_5413358_5413359;chr3R_5413718_5413719 chr3R_5413245_5413358;chr3R_5413719_5415303 0.82 1.08 0.00 2.47 0.00 1.50 1.95 1.23 1.74 0.00 0.00 0.71 5.71 1.52 0.00 2.11 0.80 0.00 0.00 0.41 0.00 2.90 0.91 0.57 1.79 0.00 1.69 1.85 3.05 0.00 0.60 0.00 1.52 1.10 1.00 2.76 0.46 0.00 0.41 0.00 0.60 0.00 1.00 0.00 1.75 1.16 0.00 2.67 0.82 1.39 1.38 1.09 0.00 0.79 1.37 0.00 0.00 1.94 K intron_retention I_chr2R_17207309_17207365,CG30394 chr2R - chr2R_17210575_17210670 chr2R_17210574_17210575;chr2R_17210670_17210671 chr2R_17210013_17210574;chr2R_17210671_17210797 94.12 92.31 91.67 91.67 92.31 100.00 86.36 94.44 92.31 NA 100.00 95.45 100.00 87.50 100.00 100.00 93.33 90.91 94.12 95.45 NA 100.00 100.00 80.00 91.67 100.00 93.75 89.47 100.00 80.00 95.83 NA NA 93.75 94.12 91.67 95.83 93.33 95.45 96.55 100.00 100.00 100.00 94.44 NA 91.67 90.00 NA 95.65 85.71 86.96 86.67 NA NA 92.86 100.00 NA NA K intron_retention Shawn_Tyler,Zw chrX + chrX_19561654_19564516 chrX_19561653_19561654;chrX_19564516_19564517 chrX_19560911_19561653;chrX_19564517_19564776 0.00 2.70 4.44 0.00 0.00 0.00 4.08 1.56 0.00 0.00 0.00 5.66 3.23 0.00 2.13 3.92 0.00 0.00 0.00 3.92 0.00 5.56 0.00 0.00 0.00 3.23 0.00 0.00 14.29 9.09 0.00 12.50 5.26 2.82 6.25 0.00 0.00 0.00 0.00 4.44 NA 7.35 4.88 0.00 3.85 4.88 4.76 0.00 0.00 9.38 0.00 0.00 0.00 4.35 0.00 0.00 NA 0.00 K intron_retention CG31955,RI_chr2L_3712446_3712767 chr2L - chr2L_3712446_3712497 chr2L_3712445_3712446;chr2L_3712497_3712498 chr2L_3712346_3712445;chr2L_3712498_3712609 24.19 24.36 23.91 26.21 24.19 22.99 22.86 28.57 22.83 20.83 23.94 27.21 28.33 21.21 25.00 24.16 27.27 22.39 33.33 19.41 32.79 28.57 18.48 17.65 25.71 35.56 28.77 46.15 28.57 19.67 25.00 29.51 19.74 27.33 21.21 24.24 19.28 16.92 25.74 25.47 29.79 26.84 28.77 14.85 26.19 18.67 14.06 18.84 30.19 20.39 25.00 16.87 13.00 14.68 32.32 21.10 12.69 15.48 K jcn_only_AA msn,I_chr3L_2558033_2560115,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2558036_2560115;chr3L_2558390_2560115 chr3L_2558393_2560115 chr3L_2560116_2560215;chr3L_2557936_2558035 1.98 1.76 1.20 2.16 3.61 2.07 0.51 1.93 2.40 1.86 1.18 2.34 3.83 1.92 2.14 4.27 3.95 2.03 2.48 1.52 1.26 2.82 1.24 1.66 3.39 2.29 1.68 0.88 2.23 2.92 1.89 1.87 2.43 1.58 1.37 1.95 1.19 1.55 1.43 2.47 2.53 2.76 2.61 1.85 2.72 1.16 2.75 1.98 2.23 0.91 1.97 1.87 2.22 1.98 1.30 3.91 1.57 2.46 K intron_retention dj-1beta,I_chr3R_26643930_26646602 chr3R + chr3R_26633390_26633455 chr3R_26633389_26633390;chr3R_26633455_26633456 chr3R_26633310_26633389;chr3R_26633456_26633524 0.00 0.00 0.00 1.98 0.00 0.58 0.55 1.07 0.71 0.00 0.00 0.71 0.00 0.00 0.44 0.00 0.00 0.00 1.29 1.38 0.58 0.00 0.00 0.81 0.00 2.06 3.03 1.90 0.00 0.00 1.17 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.34 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.28 0.67 0.88 0.81 0.00 0.00 0.25 0.00 1.13 0.35 0.20 0.00 K intron_retention CG32210 chr3L - chr3L_19545259_19545319 chr3L_19545258_19545259;chr3L_19545319_19545320 chr3L_19544465_19545258;chr3L_19545320_19545378 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 4.55 NA 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 2.44 0.00 0.00 NA 0.00 NA 2.08 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 K alternative_donor Gcn2,Gprk2 chr3R + chr3R_27222630_27222707 chr3R_27222636_27222707 chr3R_27222708_27223335;chr3R_27222124_27222629 0.72 1.20 0.00 1.96 1.67 0.00 0.85 0.00 1.21 0.00 0.00 0.65 0.00 0.00 4.69 0.00 1.92 1.75 0.00 1.26 1.47 0.00 0.74 0.00 0.00 1.72 1.77 2.13 2.35 1.14 1.28 0.00 1.83 1.22 1.79 0.00 1.44 1.61 0.62 0.00 0.00 0.72 0.00 0.85 0.00 0.00 2.33 2.50 1.01 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.00 2.63 K alternative_donor CG11489,I_chr3L_22273037_22275661 chr3L + chr3L_22276245_22276302;chr3L_22276239_22276302 chr3L_22276250_22276302 chr3L_22276303_22276572;chr3L_22276004_22276238 50.00 60.00 40.00 62.50 NA NA 40.00 75.00 NA NA NA 50.00 NA NA 55.56 50.00 50.00 60.00 NA 76.92 NA 38.46 NA NA NA 66.67 NA NA NA 40.00 62.50 NA 50.00 NA NA NA NA NA NA 26.67 NA 44.44 60.00 33.33 80.00 40.00 42.86 33.33 71.43 NA 30.77 NA NA 37.50 NA 37.50 55.56 63.64 K intron_retention CG5522 chr2R + chr2R_12672414_12675659 chr2R_12672413_12672414;chr2R_12675659_12675660 chr2R_12672404_12672413;chr2R_12675660_12675765 33.33 NA NA NA NA NA 40.00 NA 41.18 NA NA 25.00 NA NA NA NA NA NA NA 33.33 NA NA 15.38 NA NA NA 53.33 NA NA NA NA NA NA 33.33 NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N intron_retention JhI-26,I_chr2R_12177114_12177266 chr2R + chr2R_12178257_12178348 chr2R_12178256_12178257;chr2R_12178348_12178349 chr2R_12177457_12178256;chr2R_12178349_12178357 30.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N intron_retention CG13551,I_chr2R_19265701_19270570 chr2R - chr2R_19270428_19270570 chr2R_19270427_19270428;chr2R_19270570_19270571 chr2R_19269032_19270427;chr2R_19270571_19270645 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 55.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA K intron_retention CG17493 chr2L + chr2L_22443221_22443279 chr2L_22443220_22443221;chr2L_22443279_22443280 chr2L_22442797_22443220;chr2L_22443280_22445066 0.00 0.00 0.00 1.94 0.00 1.92 0.00 1.05 0.24 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 1.97 4.92 8.40 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.73 1.54 0.00 0.00 0.00 0.62 0.00 0.71 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.57 0.40 N intron_retention CG1161,RI_chr3R_1181273_1181459,I_chr3R_1182079_1182146 chr3R + chr3R_1181273_1182146 chr3R_1181272_1181273;chr3R_1182146_1182147 chr3R_1181173_1181272;chr3R_1182147_1182246 41.18 NA NA NA NA NA NA NA 41.18 NA NA NA NA NA NA NA NA NA NA 38.46 NA 46.15 NA NA NA NA NA NA NA NA NA NA 3.85 NA NA NA NA NA NA 63.64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N jcn_only_AD CG32529 chrX + chrX_19795641_19795900;chrX_19795522_19795900 chrX_19795687_19795900 chrX_19795901_19798251;chrX_19794649_19795521 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG9098 chr2L - chr2L_6011925_6011985 chr2L_6011936_6011985 chr2L_6011986_6012033;chr2L_6011861_6011924 86.85 NA NA NA NA NA NA NA 87.50 NA NA 86.21 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 93.55 NA NA 69.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention I_chr2R_11456012_11456623,CG8204 chr2R - chr2R_11461116_11461170 chr2R_11461115_11461116;chr2R_11461170_11461171 chr2R_11460955_11461115;chr2R_11461171_11461258 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 5.00 1.67 2.78 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5960163;chr3R_5959310_5960041;chr3R_5959310_5959789;chr3R_5959310_5960049;chr3R_5959310_5960182;chr3R_5959310_5960026;chr3R_5959310_5960158;chr3R_5959310_5959679 chr3R_5959310_5960101 chr3R_5958937_5959309;chr3R_5960183_5960224 29.17 33.33 40.62 21.43 17.39 20.00 40.95 30.56 40.50 23.81 29.17 32.47 46.55 37.04 27.66 32.11 28.26 41.38 26.15 26.37 22.58 60.00 40.91 27.59 18.52 20.45 37.93 33.33 9.68 21.21 27.78 NA 6.06 31.58 33.33 39.39 NA NA NA 20.00 18.18 29.67 30.91 36.00 10.00 26.47 NA 7.69 26.88 34.62 50.00 43.48 NA NA 29.27 16.67 NA 0.00 K intron_retention CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4988849_4989389 chr2L_4988848_4988849;chr2L_4989389_4989390 chr2L_4988734_4988848;chr2L_4989390_4989410 7.87 9.09 0.00 11.54 NA NA 22.22 26.92 12.82 9.09 NA 11.76 NA 6.67 8.33 29.41 17.65 23.81 14.29 16.67 NA 7.35 7.02 5.26 4.08 12.50 12.00 14.81 3.92 4.65 5.26 NA NA 21.74 7.14 3.57 0.00 7.27 3.23 7.87 8.00 14.00 12.50 7.69 0.00 6.67 0.00 0.00 11.11 2.70 11.36 0.00 5.26 0.00 20.00 12.12 0.00 NA K jcn_only_AA CG14741 chr3R - chr3R_7900616_7900895;chr3R_7900593_7900895 chr3R_7900613_7900895 chr3R_7900896_7901144;chr3R_7900525_7900592 28.36 24.49 18.52 40.15 NA 31.03 18.18 37.50 32.48 33.33 18.18 26.13 NA 41.30 37.04 29.92 31.15 40.00 41.51 27.78 41.27 30.38 33.63 21.54 21.82 30.49 30.26 NA 33.57 26.14 24.82 22.73 19.50 25.30 25.00 29.14 27.50 25.93 36.00 25.81 22.22 35.19 24.24 25.20 17.81 19.05 28.12 22.00 28.87 NA 28.36 31.58 30.86 29.17 25.76 35.90 32.69 22.14 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814894;chr2R_2815657_2816013;chr2R_2816342_2816577;chr2R_2816779_2817354;chr2R_2817604_2817753 chr2R_2814895_2815656;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817355_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG16912,I_chr2R_20674247_20674291,I_chr2R_20674654_20674897,RI_chr2R_20676692_20676888 chr2R - chr2R_20669457_20669541 chr2R_20669484_20669541 chr2R_20669542_20669730;chr2R_20669244_20669456 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 99.02 NA 100.00 100.00 100.00 100.00 97.62 97.56 100.00 100.00 100.00 100.00 100.00 100.00 94.74 98.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.00 98.21 100.00 100.00 98.28 100.00 100.00 100.00 100.00 98.21 100.00 97.78 96.77 98.21 100.00 100.00 100.00 100.00 98.41 98.57 97.50 K alternative_donor CG7222 chr2R + chr2R_6701242_6701535;chr2R_6700970_6701535 chr2R_6701240_6701535 chr2R_6701536_6701719;chr2R_6700958_6700969 4.88 15.38 10.00 5.00 16.67 0.00 9.38 4.76 6.52 0.00 0.00 5.71 0.00 10.53 11.76 7.69 0.00 11.11 7.14 5.00 0.00 0.00 8.70 7.14 0.00 9.52 4.76 0.00 0.00 0.00 9.09 0.00 8.33 4.88 10.00 0.00 0.00 8.33 0.00 9.09 0.00 8.33 0.00 0.00 0.00 0.00 7.69 0.00 5.00 11.76 0.00 0.00 22.22 0.00 8.70 0.00 0.00 11.11 K intron_retention R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083588_8089184 chr2L_8083587_8083588;chr2L_8089184_8089185 chr2L_8083530_8083587;chr2L_8089185_8089284 91.67 NA 88.89 92.86 100.00 85.71 94.74 90.00 95.24 NA NA 90.00 NA 94.12 100.00 87.10 91.67 100.00 NA 95.45 87.50 90.00 77.78 NA NA NA NA NA 90.91 100.00 92.31 NA 82.35 100.00 NA 90.91 NA NA NA 91.67 87.50 95.65 90.91 NA NA NA NA 100.00 86.96 NA NA NA NA NA 92.86 NA NA 70.00 K intron_retention CG33116,CG31697,EI_chr2L_19548696_19549582 chr2L + chr2L_19535160_19536132 chr2L_19535159_19535160;chr2L_19536132_19536133 chr2L_19534979_19535159;chr2L_19536133_19537379 0.00 0.00 0.00 7.32 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6700 chr2L - chr2L_10840006_10840060 chr2L_10840005_10840006;chr2L_10840060_10840061 chr2L_10839801_10840005;chr2L_10840061_10840796 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.65 5.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD Aldolase,I_chr3R_22083764_22086684 chr3R - chr3R_22082030_22082256;chr3R_22082030_22082195 chr3R_22082030_22082575 chr3R_22081992_22082029 55.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 55.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG5059,I_chr3L_20508909_20508960,I_chr3L_20509233_20511440 chr3L - chr3L_20508721_20508824 chr3L_20508724_20508824 chr3L_20508825_20508886;chr3L_20508544_20508720 82.50 74.47 78.57 86.44 79.49 75.00 83.93 80.23 82.50 71.88 76.67 85.71 85.45 85.37 78.18 82.98 82.05 82.22 77.78 81.75 79.41 83.61 75.00 87.04 73.08 77.78 80.65 100.00 78.18 78.79 82.50 83.78 89.74 85.48 95.65 84.38 80.00 77.50 86.96 80.82 91.18 81.40 75.61 77.27 85.37 85.11 86.67 71.19 85.37 83.78 81.25 92.59 84.00 93.94 86.00 84.09 78.12 83.33 K intron_retention kst,I_chr3L_3365752_3365816,I_chr3L_3367008_3367514 chr3L + chr3L_3366774_3367514 chr3L_3366773_3366774;chr3L_3367514_3367515 chr3L_3366444_3366773;chr3L_3367515_3367614 48.63 48.63 40.64 38.04 29.38 26.41 55.84 59.23 43.53 53.17 28.37 47.49 51.64 51.10 39.62 52.34 31.25 61.44 39.57 42.32 30.17 60.32 45.85 47.47 66.88 58.60 49.69 58.67 66.06 56.85 42.86 53.85 68.38 43.06 51.66 62.16 43.10 52.82 48.67 27.67 65.45 43.36 40.43 63.02 71.50 55.68 38.15 67.25 41.07 34.74 44.49 46.85 54.44 48.73 42.97 41.94 40.53 62.50 N alternative_donor CG31856 chr2L - chr2L_13071878_13073280 chr2L_13071878_13072837 chr2L_13071540_13071877;chr2L_13073281_13073845 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG11148,I_chr4_886499_886547,RI_chr4_886921_887162 chr4 - chr4_886478_886556 chr4_886499_886556 chr4_886557_886647;chr4_886399_886477 80.95 80.00 93.55 97.83 68.42 72.97 91.49 84.78 78.57 66.67 77.42 80.56 85.19 85.29 75.00 73.58 96.43 77.27 79.31 84.34 82.14 81.58 74.14 77.42 86.21 89.47 82.05 80.95 83.33 73.08 79.49 NA 77.27 83.87 81.25 97.14 80.00 75.00 82.93 80.00 100.00 82.09 76.67 71.74 80.00 87.50 72.22 77.78 74.39 75.00 88.68 84.62 91.67 92.86 82.35 72.22 80.95 100.00 K jcn_only_AD CG4699 chr3R + chr3R_11624200_11624445;chr3R_11624190_11624445;chr3R_11624127_11624445 chr3R_11624133_11624445 chr3R_11624446_11624758;chr3R_11623809_11624126 5.88 2.50 0.00 15.38 23.81 NA 0.00 NA 15.38 2.70 NA 5.71 NA NA NA NA NA NA NA 4.76 NA 5.71 1.59 7.81 5.88 13.64 3.70 0.00 7.14 6.67 10.00 13.16 15.62 9.52 3.57 5.17 7.14 9.43 3.77 0.00 2.38 5.88 NA 7.14 0.00 8.33 0.00 14.04 13.04 8.00 2.38 4.00 2.22 10.34 6.06 3.12 8.70 18.75 K jcn_only_AD Spred,I_chr2R_10655876_10656041,I_chr2R_10655876_10656193,I_chr2R_10655876_10656868 chr2R - chr2R_10655876_10656878;chr2R_10655876_10656782;chr2R_10655876_10656526;chr2R_10655876_10656871 chr2R_10655876_10656848 chr2R_10655776_10655875;chr2R_10656879_10656886 0.00 0.00 0.00 2.50 3.70 3.12 0.00 0.00 2.78 NA 0.00 2.17 0.00 0.00 0.00 3.12 0.00 3.57 0.00 0.00 0.00 NA 0.00 0.00 NA 3.57 0.00 0.00 NA 0.00 0.00 NA NA 1.59 0.00 2.33 NA NA NA 3.64 NA 1.67 0.00 0.00 NA 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K alternative_last_exon Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_137345_137445;chr4_136631_137445 chr4_137257_137445 chr4_137276_137344;chr4_136213_136630 chr4_136944_137256 chr4_137446_139127 0.00 0.00 0.00 10.00 0.00 0.00 5.26 4.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 4.17 0.00 0.00 0.00 0.00 NA 0.00 0.00 14.29 0.00 9.09 0.00 NA 9.09 0.00 0.00 0.00 0.00 8.33 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K alternative_donor yu chrX - chrX_5309489_5309560 chrX_5309489_5309554 chrX_5309355_5309488;chrX_5309561_5309951 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.56 5.10 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 K jcn_only_AA CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042888_5042983;chr2L_5042891_5042983 chr2L_5042935_5042983 chr2L_5042984_5043016;chr2L_5042835_5042887 4.45 NA NA 4.55 NA NA 4.35 NA 0.00 NA NA 5.88 NA NA NA 8.00 NA NA 4.55 0.00 NA NA NA NA NA NA NA NA 15.00 NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA 3.57 NA 9.09 8.57 NA NA NA NA NA 7.14 NA NA 0.00 K alternative_acceptor Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8463480_8463539 chr3L_8463480_8463530 chr3L_8463385_8463479;chr3L_8463540_8463583 30.77 23.53 NA 50.00 NA NA NA 30.77 50.00 NA NA 27.78 NA NA NA NA NA NA NA 39.13 NA 55.56 31.03 23.53 NA NA 26.67 NA 25.00 37.50 NA NA NA NA NA 36.36 45.00 23.53 36.84 29.03 NA 42.86 NA 22.22 NA 45.45 25.93 36.36 35.71 21.05 23.08 26.67 22.22 22.22 NA 36.36 30.77 NA N cassette CG9153,Myo61F chr3L + chr3L_1314321_1314885 chr3L_1314321_1314472;chr3L_1314710_1314885 chr3L_1314473_1314709 chr3L_1314158_1314320;chr3L_1314886_1315612 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 86.67 92.27 100.00 100.00 100.00 92.24 90.67 100.00 100.00 93.94 100.00 100.00 100.00 93.68 100.00 100.00 100.00 96.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor larp,F_chr3R_24151542_24153876,I_chr3R_24160430_24160932,I_chr3R_24160430_24160971,RI_chr3R_24160430_24161527 chr3R - chr3R_24160430_24161729;chr3R_24160430_24160932;chr3R_24160430_24160971;chr3R_24160430_24160975;chr3R_24160430_24160979;chr3R_24160430_24161939 chr3R_24160430_24161527 chr3R_24160330_24160429;chr3R_24161940_24162125 0.57 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 2.78 1.64 0.57 1.32 0.00 1.14 2.65 0.00 1.19 0.00 0.00 0.00 2.97 1.75 0.00 0.00 0.00 2.06 1.71 5.33 3.80 1.04 0.00 1.32 0.62 0.00 3.95 3.16 2.90 0.00 0.00 0.00 1.65 0.00 0.00 4.55 0.00 1.47 0.00 1.27 0.00 2.94 2.67 3.33 3.03 0.96 0.00 0.00 0.00 K jcn_only_AD CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_120081_120199 chr2L_120081_120167 chr2L_119981_120080;chr2L_120200_120265 90.62 91.43 90.62 90.00 NA 85.00 89.66 89.29 87.01 95.24 100.00 94.12 93.33 92.31 80.49 84.88 94.12 NA 92.16 92.31 NA 93.33 82.14 96.30 80.00 82.61 78.79 96.00 NA 80.00 89.47 96.67 96.15 88.41 88.46 89.47 NA 86.21 93.33 78.18 85.00 91.49 94.59 89.13 96.00 91.43 85.00 89.58 91.89 94.29 84.85 91.89 NA 95.24 94.29 84.62 90.91 86.67 K alternative_donor Zn72D,RF_chr3L_16100887_16102721,I_chr3L_16105199_16105253 chr3L - chr3L_16105199_16105253;chr3L_16105199_16105318;chr3L_16105199_16105431 chr3L_16105199_16105299 chr3L_16105099_16105198;chr3L_16105432_16105487 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 2.22 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 3.23 NA 0.00 0.00 K alternative_donor Aps,I_chr3L_10889978_10890059,I_chr3L_10889978_10890180,I_chr3L_10889978_10890782,I_chr3L_10889978_10890997,I_chr3L_10889978_10891195 chr3L - chr3L_10889978_10891077 chr3L_10889978_10890997 chr3L_10889879_10889977;chr3L_10891078_10891097 0.64 0.95 0.45 1.85 0.52 0.96 0.74 0.71 0.64 0.53 2.73 1.40 0.52 0.57 0.42 1.05 0.61 8.07 0.89 1.09 1.01 2.07 0.76 0.00 1.43 1.63 1.21 1.70 4.83 0.95 0.00 0.56 0.54 0.00 1.03 1.16 0.00 0.00 0.32 0.22 0.40 0.75 0.61 0.39 0.78 0.60 0.66 0.63 0.47 0.53 0.94 0.00 0.82 0.00 1.01 0.00 0.00 0.59 K intron_retention RpS3,I_chr3R_19184824_19184875 chr3R + chr3R_19184613_19184875 chr3R_19184612_19184613;chr3R_19184875_19184876 chr3R_19184508_19184612;chr3R_19184876_19184975 0.07 0.03 0.05 0.07 0.03 0.05 0.10 0.06 0.06 0.00 0.09 0.08 0.13 0.10 0.06 0.08 0.08 0.10 0.04 0.13 0.08 0.03 0.09 0.06 0.11 0.06 0.15 0.32 0.17 0.03 0.14 0.00 0.17 0.08 0.11 0.35 0.02 0.05 0.05 0.11 0.25 0.04 0.11 0.02 0.07 0.17 0.04 0.23 0.15 0.07 0.07 0.04 0.05 0.05 0.04 0.03 3.55 0.15 K intron_retention Nak chr2L - chr2L_18965393_18965455 chr2L_18965392_18965393;chr2L_18965455_18965456 chr2L_18965259_18965392;chr2L_18965456_18965589 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 K intron_retention CG42542,I_chr3R_11024452_11024586 chr3R + chr3R_11026948_11027745 chr3R_11026947_11026948;chr3R_11027745_11027746 chr3R_11026408_11026947;chr3R_11027746_11027925 9.61 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.88 NA NA NA NA NA NA 0.00 NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.38 NA K intron_retention R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8088716_8089393 chr2L_8088715_8088716;chr2L_8089393_8089394 chr2L_8088665_8088715;chr2L_8089394_8089493 100.00 NA NA 92.31 NA NA 100.00 100.00 95.65 NA NA 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 NA NA NA 100.00 NA 100.00 NA 90.91 NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention bic,I_chr2R_8757835_8757907 chr2R + chr2R_8757836_8757907 chr2R_8757835_8757836;chr2R_8757907_8757908 chr2R_8757760_8757835;chr2R_8757908_8758007 0.55 0.51 0.68 0.67 0.21 0.50 0.32 0.63 0.30 0.73 0.41 0.60 0.10 0.21 0.49 0.57 0.55 0.58 0.37 0.39 0.32 0.58 0.52 0.38 0.81 0.59 2.20 5.49 22.15 0.49 0.42 0.48 2.52 0.48 1.41 1.03 0.39 0.38 0.56 0.50 2.77 0.33 0.48 0.35 0.37 1.43 0.44 1.47 0.59 0.73 0.61 0.46 1.04 0.89 0.46 0.74 0.65 1.06 K cassette CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_120081_120420 chr2L_120081_120199;chr2L_120266_120420 chr2L_120200_120265 chr2L_119981_120080;chr2L_120421_120430 9.38 10.71 5.00 10.29 4.17 7.41 6.38 6.76 9.64 NA 3.85 5.13 10.53 10.81 7.27 14.06 5.26 2.78 8.51 2.70 11.11 27.78 7.02 9.68 9.38 5.26 10.00 14.29 8.00 13.64 10.00 10.53 15.15 9.33 12.50 9.68 10.71 8.00 5.88 10.00 16.00 6.49 9.68 13.64 4.00 8.00 2.94 7.84 9.09 11.54 12.90 15.38 5.00 NA 4.35 14.29 10.71 4.44 N alternative_donor CG17255,I_chrX_10366177_10366615,RI_chrX_10366177_10367270 chrX - chrX_10366177_10367201;chrX_10366177_10367458;chrX_10366177_10367270;chrX_10366177_10368085;chrX_10366177_10366615 chrX_10366177_10367360 chrX_10366077_10366176;chrX_10368086_10368118 5.41 4.62 6.49 7.69 7.69 4.69 6.38 1.65 5.71 1.64 3.39 5.30 6.94 4.71 6.06 7.84 8.11 8.20 7.07 4.84 7.41 3.28 6.67 3.53 6.67 7.69 5.48 1.69 2.94 4.76 7.06 5.08 5.41 6.56 4.41 3.12 6.76 1.79 6.35 3.91 4.41 6.04 6.06 5.56 0.00 3.61 3.12 5.00 7.14 2.22 4.88 5.26 5.88 4.76 6.54 5.56 0.00 5.98 K jcn_only_AA CG1140,I_chr3L_1964610_1964836 chr3L + chr3L_1964610_1965059;chr3L_1964610_1964836 chr3L_1964610_1965074 chr3L_1964541_1964609;chr3L_1965075_1965273 97.44 98.00 100.00 100.00 100.00 94.00 100.00 100.00 99.03 95.24 100.00 98.15 96.15 95.92 98.48 98.77 97.44 100.00 97.56 98.75 95.56 60.00 100.00 97.10 97.92 100.00 100.00 95.65 90.00 97.96 97.01 95.45 96.47 95.40 100.00 100.00 100.00 94.64 96.94 94.32 92.50 96.30 97.22 96.30 94.12 97.10 90.20 96.30 97.00 93.55 97.10 100.00 100.00 100.00 95.77 100.00 100.00 98.46 K jcn_only_AD CycD,I_chrX_15803256_15803313 chrX - chrX_15801625_15801686 chrX_15801625_15801682 chrX_15800855_15801624;chrX_15801687_15801824 3.67 0.00 4.41 3.92 1.47 5.71 2.80 4.80 3.82 1.82 4.62 3.51 3.33 0.00 13.19 5.08 5.45 5.33 4.05 5.44 6.15 3.70 4.27 3.19 6.35 5.95 5.77 4.17 0.00 4.48 0.00 3.03 1.25 2.44 3.64 1.37 4.55 0.00 3.77 4.95 2.17 3.36 1.82 4.94 2.17 2.67 4.76 2.22 1.36 5.41 0.81 3.03 4.55 2.67 3.67 1.30 1.00 5.06 N jcn_only_AD I_chrX_4000307_4003527,CG4857 chrX + chrX_4011315_4011996;chrX_4011429_4011996;chrX_4011270_4011996 chrX_4011929_4011996 chrX_4011997_4012308;chrX_4011093_4011269 74.29 70.83 80.00 47.83 72.41 88.46 63.64 59.62 55.00 72.00 72.73 73.68 81.82 72.00 75.00 82.76 83.33 50.00 72.00 81.25 NA 76.19 60.53 89.19 90.32 76.47 74.29 93.33 100.00 69.49 80.30 95.00 47.27 71.43 90.32 72.50 83.33 85.71 60.71 63.55 95.24 62.32 50.00 82.35 91.67 78.79 88.89 72.00 50.00 80.77 66.04 66.67 NA 96.30 61.54 80.00 66.67 85.19 K jcn_only_AA CG2862 chr2L + chr2L_2770192_2770272 chr2L_2770192_2770258 chr2L_2770181_2770191;chr2L_2770273_2770400 99.61 99.25 99.50 99.14 98.82 100.00 99.31 99.29 99.77 100.00 99.16 100.00 100.00 100.00 99.59 98.88 100.00 100.00 100.00 100.00 99.51 100.00 100.00 99.05 100.00 99.49 100.00 100.00 100.00 100.00 99.55 99.04 99.58 99.63 98.88 100.00 100.00 100.00 100.00 99.17 100.00 99.76 99.35 99.16 99.54 99.27 98.84 99.70 99.59 99.05 96.97 99.07 99.38 100.00 99.61 100.00 100.00 99.03 K jcn_only_AA tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563461_567573;chr3R_563503_567573 chr3R_563485_567573 chr3R_567574_568885;chr3R_563195_563460 7.08 7.14 14.29 7.02 15.38 17.39 15.71 8.93 6.12 NA 12.50 9.33 4.55 8.70 4.26 4.62 6.25 11.43 11.43 12.05 8.57 4.00 4.00 0.00 NA 10.87 4.65 4.17 12.12 17.14 6.00 NA 1.89 5.71 21.74 0.00 2.33 7.41 13.51 7.46 15.38 7.79 9.09 3.12 12.90 2.22 6.25 3.23 5.00 0.00 16.67 0.00 NA NA 7.50 4.65 0.00 2.50 K jcn_only_AD CG6569,RI_chr3R_17693077_17693126,I_chr3R_17694702_17694760 chr3R - chr3R_17692987_17693126 chr3R_17692987_17693059 chr3R_17692977_17692986;chr3R_17693127_17693226 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA NA NA NA 0.00 NA NA 1.47 NA NA NA NA NA 0.00 NA 0.00 NA NA 3.03 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K alternative_acceptor CG15618 chrX - chrX_19758692_19758760 chrX_19758696_19758760 chrX_19758761_19759042;chrX_19757859_19758691 24.49 16.67 23.53 30.00 21.05 26.32 9.09 13.04 21.43 35.71 NA 20.45 15.38 12.50 13.04 15.79 20.00 22.73 25.00 24.49 13.33 60.00 26.83 21.88 31.25 25.00 25.00 36.84 NA 37.04 42.11 NA 13.04 19.35 31.25 26.67 27.27 34.48 22.00 26.09 NA 15.69 25.00 15.00 NA 28.57 26.32 25.00 19.35 NA 19.35 17.65 26.09 NA 29.17 NA 13.04 31.25 K alternative_acceptor CG9007,I_chr3L_13995402_13996269,I_chr3L_13995402_13996272,I_chr3L_13995402_13996296,I_chr3L_13995480_13996292,RI_chr3L_14010982_14011111 chr3L + chr3L_13995402_13996272;chr3L_13995402_13996296;chr3L_13995402_13996269 chr3L_13995402_13996292 chr3L_13995380_13995401;chr3L_13996297_13996360 89.73 NA 87.50 92.86 NA NA 100.00 89.47 86.67 NA NA 92.86 NA NA 85.71 89.47 NA NA 87.50 87.50 NA NA 100.00 85.71 NA NA NA NA NA NA 100.00 NA NA 81.82 100.00 NA NA NA NA NA NA 91.67 100.00 NA NA NA NA 100.00 88.24 NA NA NA NA NA 90.00 NA NA NA K cassette Gpi1,I_chrX_16256088_16259237 chrX + chrX_16254020_16254255 chrX_16254020_16254082;chrX_16254192_16254255 chrX_16254083_16254191 chrX_16253412_16254019;chrX_16254256_16254391 90.91 NA NA 90.00 NA NA 90.00 100.00 90.91 NA NA 100.00 NA NA NA 88.89 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 87.50 NA NA NA 87.50 NA 100.00 87.50 NA NA NA NA NA NA NA 100.00 85.71 K intron_retention CG11266,RI_chr2L_7033019_7034764,I_chr2L_7034274_7035406,RI_chr2L_7034911_7035074,I_chr2L_7051093_7051366 chr2L + chr2L_7034913_7035406 chr2L_7034912_7034913;chr2L_7035406_7035407 chr2L_7034848_7034912;chr2L_7035407_7035506 91.48 94.44 92.31 90.91 100.00 86.36 94.12 95.24 97.67 91.67 100.00 93.75 89.47 75.00 100.00 94.74 92.86 91.67 78.57 92.86 90.91 76.00 89.29 93.94 91.30 100.00 94.74 90.91 100.00 80.95 88.89 91.67 94.44 96.00 93.33 NA 85.71 89.47 77.42 84.44 90.91 96.77 76.47 80.95 89.47 88.00 100.00 85.19 89.19 87.50 89.29 86.67 100.00 90.91 94.12 73.68 100.00 95.45 K intron_retention CG9248 chr2L + chr2L_21160562_21160623 chr2L_21160561_21160562;chr2L_21160623_21160624 chr2L_21159272_21160561;chr2L_21160624_21160783 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.89 100.00 98.91 100.00 100.00 98.80 98.81 100.00 98.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.90 99.43 100.00 K intron_retention Tak1 chrX - chrX_20387571_20387685 chrX_20387570_20387571;chrX_20387685_20387686 chrX_20386932_20387570;chrX_20387686_20388149 13.56 10.26 28.33 10.23 26.92 11.11 36.78 16.67 22.05 18.60 8.93 20.00 17.39 15.79 22.95 22.62 14.29 4.26 19.40 11.48 6.35 47.62 16.22 14.46 16.39 10.26 13.54 10.42 12.99 11.11 16.67 6.90 12.68 12.87 16.95 13.56 17.76 13.64 9.01 9.90 14.75 18.57 17.24 8.06 12.90 10.89 13.10 6.06 11.30 13.28 12.87 18.33 3.12 14.29 15.22 14.67 6.21 3.30 K alternative_donor CG6796 chr2R + chr2R_12889896_12889958 chr2R_12889904_12889958 chr2R_12889959_12891107;chr2R_12889688_12889895 2.50 NA NA NA NA NA NA 7.14 NA NA NA 5.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD AIF chr2L + chr2L_2152463_2152662;chr2L_2152271_2152662 chr2L_2152466_2152662 chr2L_2152663_2152944;chr2L_2152233_2152270 2.56 0.00 3.57 6.90 8.33 0.00 5.88 0.00 1.49 3.57 0.00 7.14 5.00 0.00 0.00 3.23 NA 2.56 4.35 0.00 0.00 14.29 0.00 1.79 6.67 3.85 8.89 5.26 3.70 4.08 0.00 0.00 2.08 2.56 0.00 0.00 5.33 4.17 1.72 4.00 10.71 1.59 4.00 14.81 4.76 0.00 4.55 NA 4.44 NA 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 K intron_retention B52,F_chr3R_9488762_9491174,E_chr3R_9488770_9491174 chr3R + chr3R_9491249_9491311 chr3R_9491248_9491249;chr3R_9491311_9491312 chr3R_9491175_9491248;chr3R_9491312_9491623 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.27 K alternative_acceptor CG8596,I_chr3L_7336128_7336203,RI_chr3L_7336707_7336767,I_chr3L_7337046_7338155,I_chr3L_7340885_7340945 chr3L - chr3L_7336707_7336767 chr3L_7336711_7336767 chr3L_7336768_7336867;chr3L_7336607_7336706 92.86 95.45 100.00 100.00 95.65 100.00 93.75 95.24 83.33 93.33 100.00 97.50 100.00 90.00 94.74 95.24 85.71 88.89 91.67 90.38 90.00 89.29 96.88 92.86 93.33 93.33 78.95 NA 93.33 85.71 77.78 90.91 93.33 89.74 100.00 93.75 96.43 89.47 95.65 91.18 93.33 90.00 91.67 84.00 87.10 90.32 80.95 90.00 91.67 92.86 84.00 94.12 90.91 93.75 96.43 85.71 93.33 85.71 K alternative_donor skap,I_chr3R_4766829_4767129,CRE_chr3R_4766916_4767129 chr3R + chr3R_4766912_4767129 chr3R_4767039_4767129 chr3R_4767130_4767229;chr3R_4766816_4766911 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Imp,I_chrX_10699490_10700695,RI_chrX_10699665_10700501,RI_chrX_10699665_10700695 chrX - chrX_10699503_10700501 chrX_10699502_10699503;chrX_10700501_10700502 chrX_10699299_10699502;chrX_10700502_10700547 68.34 NA 75.00 61.11 NA NA 84.21 59.26 77.27 NA 41.67 70.59 54.55 66.67 50.00 65.71 36.36 NA 58.82 66.67 NA 81.25 36.36 NA NA NA NA NA 100.00 90.00 72.73 NA 95.24 57.14 NA NA NA NA NA NA NA 56.25 70.00 NA NA 87.50 NA 96.55 59.09 NA NA NA NA NA 70.00 NA NA 93.33 K jcn_only_AA bip2,RI_chr4_481674_482028,RI_chr4_481674_487126,RI_chr4_483144_483680,RI_chr4_486609_487126 chr4 - chr4_481478_482130 chr4_481674_482130 chr4_482131_482954;chr4_481340_481477 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA 95.00 96.15 NA NA NA NA NA NA NA NA NA NA 96.43 NA NA 100.00 NA NA NA NA NA NA NA 93.55 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA 100.00 K alternative_acceptor CG3091,I_chrX_2147635_2147990 chrX - chrX_2147635_2147990 chrX_2147644_2147990 chrX_2147991_2148090;chrX_2147535_2147634 100.00 100.00 97.37 100.00 100.00 100.00 100.00 98.57 100.00 100.00 100.00 100.00 100.00 100.00 98.11 98.31 100.00 100.00 100.00 98.82 100.00 100.00 97.62 100.00 100.00 96.67 97.44 92.86 100.00 96.67 98.67 100.00 100.00 98.15 100.00 100.00 97.37 100.00 100.00 96.67 100.00 100.00 97.22 100.00 100.00 98.59 100.00 100.00 98.59 95.24 100.00 100.00 95.00 100.00 100.00 97.92 100.00 100.00 K intron_retention Lag1,RI_chrX_6153758_6161036,I_chrX_6160907_6161036 chrX - chrX_6153567_6153636 chrX_6153566_6153567;chrX_6153636_6153637 chrX_6153345_6153566;chrX_6153637_6153757 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention noncoding_20684,R_chr4_488962_489782,I_chr4_490841_491639 chr4 + chr4_488621_489782 chr4_488620_488621;chr4_489782_489783 chr4_488555_488620;chr4_489783_489860 41.67 NA NA 33.33 NA NA 40.00 41.67 33.33 NA NA NA NA 41.67 NA 42.11 NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA 44.44 NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor RhoGAP68F,RI_chr3L_12133229_12134100 chr3L + chr3L_12134478_12134543 chr3L_12134478_12134540 chr3L_12134352_12134477;chr3L_12134544_12134576 87.50 88.89 NA NA NA NA 83.33 69.23 80.95 NA 87.50 90.00 85.71 NA 85.71 NA 87.50 NA NA 92.86 NA NA 76.92 88.89 NA NA NA NA NA 75.00 100.00 NA NA 88.89 NA NA 90.91 88.89 90.00 85.71 NA 64.29 NA NA NA NA 90.91 NA 70.00 NA 88.89 NA NA NA NA 77.78 NA NA K intron_retention CG11148,I_chr4_876247_876311,I_chr4_882005_882418,RI_chr4_886921_887162 chr4 - chr4_876195_876311 chr4_876194_876195;chr4_876311_876312 chr4_876147_876194;chr4_876312_876411 93.33 88.89 92.00 87.50 100.00 89.47 97.30 98.21 95.92 90.00 86.67 95.92 100.00 96.67 87.88 95.35 100.00 91.67 93.55 94.59 90.91 87.50 85.71 95.45 85.71 95.45 95.83 80.00 100.00 100.00 96.30 100.00 87.50 90.74 90.48 80.00 81.82 92.31 90.00 100.00 90.91 96.08 95.83 93.33 94.12 95.24 88.24 94.74 92.75 97.14 87.50 100.00 89.47 93.33 96.00 78.12 91.67 96.88 K cassette pum,I_chr3R_4898752_4906279,I_chr3R_4989351_5039481 chr3R - chr3R_4906745_4982839 chr3R_4906745_4967041;chr3R_4967054_4982839 chr3R_4967042_4967053 chr3R_4906280_4906744;chr3R_4982840_4983072 41.67 46.15 NA 40.91 36.36 NA 50.00 40.00 36.67 NA 35.00 37.50 NA NA 41.67 NA 15.38 NA NA 36.36 NA 56.25 46.15 60.00 NA 41.67 60.00 NA NA 35.71 66.67 NA NA 30.00 63.64 75.00 50.00 36.36 66.67 40.00 NA 36.36 NA 58.33 NA 45.45 NA NA 38.10 NA 54.55 50.00 NA NA 41.67 NA NA NA K jcn_only_AD CG31278,noncoding_15893,RI_chr3R_6533509_6533568 chr3R - chr3R_6533509_6533568;chr3R_6533509_6533579 chr3R_6533509_6533960 chr3R_6533409_6533508;chr3R_6533961_6534040 0.00 NA NA 0.00 NA NA NA 8.00 0.00 NA NA NA NA NA NA NA NA NA NA 4.35 NA NA NA NA NA NA 4.00 NA NA NA 0.00 NA 0.00 4.17 NA NA 9.52 NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA 5.00 NA NA NA NA 0.00 0.00 0.00 K cassette CG6782,CG6783 chr3R - chr3R_7390434_7392639 chr3R_7390434_7390505;chr3R_7390834_7392639 chr3R_7390506_7390833 chr3R_7390162_7390433;chr3R_7392640_7392746 2.31 1.87 1.20 1.59 0.55 1.35 2.71 1.46 2.30 2.63 2.26 1.26 3.36 2.07 1.52 1.39 3.94 4.79 1.87 1.27 2.36 2.46 2.47 2.36 3.68 1.30 3.15 6.62 3.08 2.45 3.53 1.45 4.84 1.68 3.41 2.96 1.81 1.32 1.07 4.05 4.93 1.21 2.03 2.50 2.31 3.23 2.09 4.47 1.45 3.56 3.87 2.99 1.95 1.51 1.51 1.74 3.14 3.27 K alternative_donor eIF-5A,I_chr2R_19945430_19946454,I_chr2R_19945576_19946006,I_chr2R_19945723_19946006,I_chr2R_19945783_19946006,I_chr2R_19945852_19946006,I_chr2R_19945875_19946006,I_chr2R_19945921_19946006,I_chr2R_19946299_19946454,I_chr2R_19946657_19946733,I_chr2R_19948517_19948682 chr2R + chr2R_19945921_19946006;chr2R_19945426_19946006;chr2R_19945875_19946006;chr2R_19945430_19946006 chr2R_19945576_19946006 chr2R_19946007_19946106;chr2R_19945343_19945425 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG32711,I_chrX_8302812_8302897 chrX - chrX_8302812_8303695 chrX_8302812_8303435 chrX_8302712_8302811;chrX_8303696_8304142 61.25 NA NA 85.71 NA NA 40.00 83.33 53.85 NA NA 75.00 NA NA NA 55.56 NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 62.50 NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA K intron_retention Rho1,I_chr2R_11990455_11992537,RI_chr2R_11991687_11992537 chr2R + chr2R_11991280_11992537 chr2R_11991279_11991280;chr2R_11992537_11992538 chr2R_11991116_11991279;chr2R_11992538_11992637 1.29 1.59 1.34 1.28 0.77 1.45 1.82 1.08 1.00 1.69 0.78 2.91 0.91 0.91 1.08 1.81 0.56 1.06 1.22 2.26 0.77 2.92 1.00 1.10 1.17 1.51 1.45 1.45 1.94 1.11 1.09 1.97 1.01 0.99 1.54 1.86 1.16 1.37 1.29 1.49 2.27 1.64 0.82 1.45 1.87 1.61 1.30 2.41 1.35 0.75 1.26 0.80 0.76 1.17 1.29 1.07 0.65 1.82 K intron_retention ZnT63C chr3L + chr3L_3311828_3311885 chr3L_3311827_3311828;chr3L_3311885_3311886 chr3L_3311730_3311827;chr3L_3311886_3312402 0.00 0.40 0.00 0.89 0.00 1.50 0.00 0.00 0.39 0.40 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.31 0.00 0.00 0.00 0.00 0.74 2.20 0.26 0.23 0.00 0.00 0.40 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.19 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2364640 chr2L_2361585_2361586;chr2L_2364640_2364641 chr2L_2361486_2361585;chr2L_2364641_2364697 11.76 9.80 10.91 8.11 16.67 10.00 16.22 15.46 12.31 6.67 13.16 13.98 12.07 13.21 6.35 7.14 12.50 9.52 11.11 15.29 9.76 11.65 12.24 22.00 13.89 11.32 15.15 18.18 8.57 3.49 8.89 2.47 2.90 8.42 12.00 12.07 19.61 12.00 12.82 10.71 0.00 13.82 11.76 16.67 3.26 4.07 3.03 7.63 15.69 17.65 9.38 15.91 12.20 9.68 12.96 12.00 8.47 1.81 K intron_retention CG3907,I_chr2R_19909065_19909249,I_chr2R_19909692_19909755 chr2R - chr2R_19908843_19908898 chr2R_19908842_19908843;chr2R_19908898_19908899 chr2R_19908526_19908842;chr2R_19908899_19909064 1.54 0.00 0.00 0.00 1.54 0.00 2.15 4.00 2.25 0.00 0.00 1.67 2.13 0.00 1.67 2.60 0.00 0.00 3.57 1.28 0.00 4.76 0.00 1.75 0.00 7.27 1.98 0.00 0.00 3.77 1.33 0.00 5.48 2.33 0.00 3.03 1.77 0.00 1.94 2.50 3.12 3.15 1.82 0.00 1.32 2.04 2.22 6.35 1.68 1.09 1.03 0.00 0.00 3.39 0.00 0.00 0.00 3.28 N multi_cassette Tsp42Ed chr2R - chr2R_2897806_2899096 chr2R_2897806_2897936;chr2R_2898099_2898167;chr2R_2898360_2899096 chr2R_2897937_2898098;chr2R_2898168_2898359 chr2R_2897608_2897805;chr2R_2899097_2899359 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Jupiter,I_chr3R_7418347_7445425,I_chr3R_7429934_7430307,I_chr3R_7429962_7445425,I_chr3R_7430006_7445425,RI_chr3R_7442748_7445425,RI_chr3R_7442793_7445425 chr3R - chr3R_7429962_7445425 chr3R_7430006_7445425 chr3R_7445426_7445525;chr3R_7429906_7429961 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention cana,CG33695 chr2L + chr2L_11278486_11278754 chr2L_11278485_11278486;chr2L_11278754_11278755 chr2L_11278394_11278485;chr2L_11278755_11279847 7.69 NA NA NA NA NA NA NA NA NA NA 15.38 NA NA NA NA NA NA NA 5.00 NA 17.65 0.00 NA NA NA NA 14.29 15.00 10.53 NA NA NA 25.00 NA 0.00 6.67 NA 9.52 7.69 8.33 0.00 NA NA 9.52 3.85 NA 0.00 25.00 0.00 12.50 NA 0.00 NA NA NA 0.00 0.00 K jcn_only_AD I_chr2R_2754447_2755071,Spn4,CG9454 chr2R - chr2R_2764239_2764725;chr2R_2764239_2764302 chr2R_2764239_2764449 chr2R_2764101_2764238 0.00 NA 0.00 NA NA NA NA 4.00 0.00 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 3.85 NA NA NA NA NA 0.00 NA 0.00 NA NA 0.00 6.67 NA NA NA NA 4.55 NA NA NA NA NA 5.00 1.72 K intron_retention Pgi chr2R - chr2R_4798876_4798930 chr2R_4798875_4798876;chr2R_4798930_4798931 chr2R_4798689_4798875;chr2R_4798931_4799459 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 4.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Cap-G,CG34439 chr2R + chr2R_9046609_9047235 chr2R_9046609_9047038 chr2R_9046522_9046608;chr2R_9047236_9047380 41.67 34.09 43.06 88.33 48.28 50.00 41.33 70.87 41.88 21.43 60.47 49.53 71.43 50.82 46.91 53.00 50.98 47.22 46.48 69.91 54.00 6.67 28.57 35.53 41.67 44.64 35.48 33.33 33.33 21.28 40.48 44.44 19.44 53.12 46.67 36.00 37.50 41.18 36.49 31.94 44.00 51.52 71.79 29.63 40.00 34.29 42.86 37.50 55.81 30.43 41.07 32.26 30.51 40.00 41.77 45.35 33.96 31.37 K intron_retention ssp4,I_chr2R_13409412_13410357,RI_chr2R_13409412_13411004,I_chr2R_13409412_13411328,I_chr2R_13409412_13411588,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13409406_13410357 chr2R_13409405_13409406;chr2R_13410357_13410358 chr2R_13409337_13409405;chr2R_13410358_13410457 96.43 100.00 100.00 100.00 100.00 93.75 100.00 100.00 96.77 NA 88.89 96.77 100.00 100.00 95.45 95.24 100.00 95.65 92.86 90.91 93.33 91.67 88.00 90.48 100.00 100.00 100.00 100.00 NA 100.00 100.00 90.91 91.67 95.45 91.67 100.00 100.00 100.00 100.00 96.15 NA 100.00 100.00 100.00 NA 92.31 83.33 88.24 96.43 91.67 92.59 100.00 81.82 87.50 94.44 90.91 100.00 92.31 K alternative_donor cno,I_chr3R_999718_999986,I_chr3R_999737_999777,I_chr3R_1011213_1011336 chr3R - chr3R_1011213_1013029 chr3R_1011213_1011336 chr3R_1011113_1011212;chr3R_1013030_1013382 0.00 0.00 0.00 0.00 0.00 0.00 5.41 0.00 2.20 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 1.30 1.67 0.00 0.00 1.28 5.36 2.94 2.00 0.00 NA 1.41 0.00 0.00 0.00 1.06 0.00 0.99 1.23 0.00 2.00 0.00 1.69 0.00 0.00 0.00 2.86 0.00 2.94 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Fur2,RI_chrX_16267905_16268958,I_chrX_16270205_16270272,I_chrX_16274795_16274867 chrX + chrX_16274795_16274859 chrX_16274794_16274795;chrX_16274859_16274860 chrX_16274695_16274794;chrX_16274860_16275481 0.00 0.00 0.00 2.76 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 1.18 0.93 0.81 0.00 0.00 1.00 0.66 0.81 0.00 1.79 0.00 0.00 0.00 3.20 0.00 10.94 0.00 0.00 0.00 0.00 2.48 1.98 0.00 2.05 0.00 0.00 0.98 1.61 0.97 1.19 1.00 0.00 1.27 2.04 1.37 0.56 2.17 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor scrib,I_chr3R_22362324_22363015,I_chr3R_22381374_22399575,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22362244_22363092;chr3R_22362120_22363092;chr3R_22362315_22363092;chr3R_22362224_22363092;chr3R_22362324_22363092;chr3R_22362142_22363092 chr3R_22362254_22363092 chr3R_22363093_22363115;chr3R_22362112_22362119 35.14 25.00 28.85 45.95 35.00 39.29 40.00 42.25 32.73 21.05 32.50 41.67 35.14 40.48 40.48 41.27 34.21 40.54 38.10 38.04 27.91 32.76 31.37 36.11 23.33 41.18 43.75 42.11 33.96 36.71 40.48 34.78 41.67 40.85 47.62 31.82 15.79 22.73 30.77 33.33 43.90 40.51 44.12 31.58 30.56 34.15 27.27 30.77 40.58 43.75 41.30 24.14 33.33 33.33 41.18 33.33 37.50 32.84 K intron_retention Qm,E_chr3L_23087825_23087922,RI_chr3L_23087947_23088093 chr3L - chr3L_23087947_23088093 chr3L_23087946_23087947;chr3L_23088093_23088094 chr3L_23087923_23087946;chr3L_23088094_23088193 99.55 99.55 99.59 99.83 99.00 99.32 99.62 99.61 99.54 98.80 99.57 99.64 99.60 99.52 99.73 99.61 99.53 99.64 99.79 99.63 99.41 99.54 99.06 99.54 98.95 99.47 99.49 98.86 98.22 99.75 99.55 99.21 99.64 99.59 99.81 99.67 99.25 99.30 99.54 99.70 99.01 99.52 99.41 99.67 99.17 99.63 99.67 99.76 99.77 99.14 99.76 99.66 99.67 99.39 99.76 99.46 99.43 99.62 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2395659 chrX_2388671_2393243;chrX_2393712_2394269;chrX_2394396_2395151;chrX_2395275_2395659 chrX_2393244_2393711;chrX_2394270_2394395;chrX_2395152_2395274 chrX_2388641_2388670;chrX_2395660_2395759 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG9003,I_chr2R_7531685_7531831,RI_chr2R_7538713_7538828 chr2R - chr2R_7531685_7531831 chr2R_7531685_7531743 chr2R_7531585_7531684;chr2R_7531832_7531921 100.00 NA 100.00 100.00 NA NA 100.00 95.92 98.41 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 95.24 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 100.00 NA 97.73 NA 100.00 NA NA 94.44 NA 100.00 96.15 100.00 NA NA NA 100.00 NA 100.00 NA K intron_retention CG7192,RI_chrX_17993756_17994097 chrX - chrX_17992834_17992900 chrX_17992833_17992834;chrX_17992900_17992901 chrX_17992612_17992833;chrX_17992901_17993255 0.00 0.00 0.00 3.95 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.88 0.00 0.00 0.00 0.00 0.00 6.02 0.80 0.00 0.00 0.00 3.77 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.66 2.08 0.00 0.00 0.00 0.00 1.19 0.00 0.00 2.17 0.00 0.00 0.00 0.00 K intron_retention CG14340 chr2L + chr2L_1113766_1113825 chr2L_1113765_1113766;chr2L_1113825_1113826 chr2L_1113559_1113765;chr2L_1113826_1114140 25.04 19.05 NA 35.00 43.75 33.33 42.86 33.33 29.03 NA NA 24.14 NA NA 30.77 29.17 NA NA 45.45 19.05 NA NA 26.92 9.09 NA 14.29 25.93 15.38 NA NA 29.41 36.36 NA 29.41 NA 20.00 17.65 0.00 28.57 22.22 31.25 28.57 NA NA 0.00 21.74 28.57 NA 18.18 20.00 21.05 18.18 NA 14.29 26.67 22.73 21.05 NA K intron_retention Dap160,I_chr2L_21139943_21140007 chr2L - chr2L_21138362_21138711 chr2L_21138361_21138362;chr2L_21138711_21138712 chr2L_21138113_21138361;chr2L_21138712_21139602 3.12 4.65 0.00 0.00 0.00 0.00 11.54 17.86 3.12 0.00 11.11 4.17 NA NA 0.00 0.00 0.00 6.25 0.00 1.43 0.00 0.00 5.71 2.13 2.86 NA 5.00 15.79 2.00 6.35 10.00 10.87 1.75 5.00 0.00 6.38 6.78 0.00 4.00 11.43 1.72 5.45 NA 4.26 0.00 1.47 2.44 5.81 9.52 5.56 4.35 7.41 2.00 4.76 0.00 0.00 5.45 1.96 K intron_retention CG6454,I_chr3R_20175958_20178905 chr3R + chr3R_20180462_20180514 chr3R_20180461_20180462;chr3R_20180514_20180515 chr3R_20179340_20180461;chr3R_20180515_20180602 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654157,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15652351_15654157 chrX_15652363_15654157 chrX_15654158_15654174;chrX_15652263_15652350 35.71 NA NA 35.71 NA NA 12.50 NA 42.86 NA NA NA NA NA NA 33.33 NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA 18.18 NA NA NA NA NA NA NA NA NA K intron_retention lid chr2L - chr2L_5992406_5992469 chr2L_5992405_5992406;chr2L_5992469_5992470 chr2L_5990410_5992405;chr2L_5992470_5993345 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 3.92 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor ps,I_chr3R_5243723_5265067,I_chr3R_5243723_5270765,noncoding_15575,I_chr3R_5245770_5265067,I_chr3R_5245770_5269732,I_chr3R_5269733_5270765 chr3R + chr3R_5243723_5257753 chr3R_5245770_5257753 chr3R_5257754_5258205;chr3R_5243705_5243722 87.50 85.71 81.82 83.33 100.00 88.89 84.21 80.95 88.89 66.67 75.00 100.00 90.91 84.62 90.91 84.00 90.00 88.89 71.43 62.50 83.33 76.92 90.91 100.00 100.00 75.00 100.00 83.33 66.67 100.00 100.00 50.00 76.92 90.00 100.00 87.50 83.33 80.00 80.00 88.89 66.67 76.47 90.00 87.50 100.00 100.00 75.00 81.82 80.95 66.67 87.50 100.00 100.00 100.00 90.91 100.00 100.00 100.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2392054 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2389073;chrX_2389272_2392054 chrX_2387584_2387709;chrX_2388437_2388670;chrX_2389074_2389271 chrX_2387149_2387248;chrX_2392055_2392148 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA 66.67 NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention CG7530,I_chr3R_10551870_10552281,I_chr3R_10552415_10552911,eff chr3R - chr3R_10551870_10552911 chr3R_10551869_10551870;chr3R_10552911_10552912 chr3R_10551770_10551869;chr3R_10552912_10553011 1.04 0.00 0.82 1.96 1.19 1.12 0.00 2.55 2.30 0.00 6.06 1.84 0.00 0.94 0.83 1.52 0.00 4.44 1.08 3.92 8.00 0.00 0.76 0.97 2.27 0.00 4.12 4.76 4.55 0.00 2.75 1.72 1.59 1.95 0.00 4.00 0.00 1.16 0.00 1.04 5.66 1.06 0.00 0.00 0.00 0.88 1.72 0.00 1.16 0.00 0.00 0.00 0.00 3.45 1.74 0.00 0.00 0.73 K jcn_only_AD mei-218,mei-217 chrX - chrX_17035515_17036834 chrX_17035515_17035726 chrX_17035359_17035514;chrX_17036835_17036969 100.00 NA NA 91.30 NA NA 100.00 96.88 100.00 NA NA 96.55 NA NA 100.00 NA 100.00 96.15 100.00 100.00 NA 93.33 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 NA 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA K intron_retention wnd chr3L - chr3L_19620011_19620330 chr3L_19620010_19620011;chr3L_19620330_19620331 chr3L_19619112_19620010;chr3L_19620331_19620484 0.00 NA 0.00 5.56 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA 10.53 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 10.53 0.00 NA 0.00 NA 0.00 NA NA 0.00 K intron_retention Cortactin chr3R - chr3R_16889831_16890016 chr3R_16889830_16889831;chr3R_16890016_16890017 chr3R_16889620_16889830;chr3R_16890017_16890085 2.76 4.60 3.67 2.99 2.06 0.00 3.37 3.95 2.06 2.41 0.99 3.92 5.26 2.94 2.70 2.21 3.00 3.03 4.07 1.96 1.52 2.25 3.26 3.54 2.08 1.64 3.55 2.27 4.86 2.78 3.97 3.33 1.44 2.76 2.68 3.64 3.72 0.00 3.57 2.88 2.50 2.28 2.15 3.40 1.53 5.13 4.07 1.59 2.88 3.06 2.70 0.00 2.08 0.77 2.44 1.01 4.14 0.00 K intron_retention lin-28 chr3L + chr3L_5649854_5649922 chr3L_5649853_5649854;chr3L_5649922_5649923 chr3L_5649705_5649853;chr3L_5649923_5650073 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA 27.78 12.50 NA NA 7.69 NA NA NA NA 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA K intron_retention Mtch,RI_chr3L_184729_185366,I_chr3L_185367_185925 chr3L + chr3L_184670_184777 chr3L_184669_184670;chr3L_184777_184778 chr3L_184665_184669;chr3L_184778_184854 91.67 100.00 86.96 96.00 60.00 73.33 82.61 82.86 88.46 80.00 91.67 93.10 NA 100.00 90.00 83.33 85.71 83.33 78.95 83.78 90.91 100.00 100.00 100.00 100.00 77.78 92.59 94.74 95.65 94.12 85.71 91.67 90.00 85.71 92.86 100.00 93.75 94.44 92.86 89.74 100.00 77.78 87.50 77.78 92.86 96.55 100.00 91.67 88.24 92.31 100.00 92.31 92.86 91.67 79.17 81.25 83.33 84.00 K intron_retention Sos chr2L + chr2L_13818568_13818635 chr2L_13818567_13818568;chr2L_13818635_13818636 chr2L_13817677_13818567;chr2L_13818636_13819269 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 2.20 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention brp chr2R + chr2R_5423598_5423656 chr2R_5423597_5423598;chr2R_5423656_5423657 chr2R_5423346_5423597;chr2R_5423657_5424085 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention woc,I_chr3R_23089174_23089688,I_chr3R_23089174_23089695,I_chr3R_23096096_23096561 chr3R - chr3R_23089174_23089498 chr3R_23089173_23089174;chr3R_23089498_23089499 chr3R_23089074_23089173;chr3R_23089499_23089785 33.33 39.13 23.53 28.57 31.82 28.00 28.57 24.44 25.00 35.71 33.33 31.71 37.93 22.22 29.03 35.48 27.59 37.04 26.92 38.78 38.89 30.00 42.50 38.46 26.09 39.13 36.67 26.32 35.29 42.11 22.22 41.67 21.88 23.91 38.89 29.17 33.33 34.62 47.62 37.84 38.89 30.91 26.67 37.04 NA 28.57 50.00 37.04 25.53 38.89 32.43 33.33 35.71 63.64 25.00 38.10 NA NA K alternative_donor dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21308996_21310000;chr2L_21308996_21309579 chr2L_21308996_21309994 chr2L_21308992_21308995;chr2L_21310001_21310009 7.42 17.39 14.29 16.13 6.25 11.76 6.90 7.69 13.56 NA 5.00 17.39 13.33 10.53 7.69 6.67 6.67 7.69 8.70 12.90 5.26 8.70 4.00 5.00 11.11 11.76 3.85 NA NA 2.50 8.33 0.00 12.50 18.18 7.14 3.23 2.94 9.52 3.57 NA 0.00 12.77 11.76 4.00 8.33 0.00 9.09 2.56 8.33 NA 3.70 15.79 6.25 0.00 4.00 7.14 6.67 3.33 K intron_retention cul-2,RI_chr2L_21657668_21657832,noncoding_4226,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21657777_21657832 chr2L_21657776_21657777;chr2L_21657832_21657833 chr2L_21657743_21657776;chr2L_21657833_21657932 41.67 28.57 28.57 47.37 NA NA 60.53 51.85 43.18 NA 41.67 32.56 33.33 41.67 38.89 31.91 37.50 NA 36.84 29.03 50.00 50.00 62.50 44.00 70.59 38.46 75.00 79.41 50.00 54.17 42.11 NA 46.15 52.00 75.00 93.33 53.33 36.36 28.57 38.10 50.00 41.67 46.67 51.61 16.67 41.67 36.84 30.77 39.47 42.31 58.62 36.00 33.33 42.86 14.29 26.32 37.50 NA K jcn_only_AA Pdsw chr2L + chr2L_3466229_3466315 chr2L_3466229_3466297 chr2L_3466160_3466228;chr2L_3466316_3466416 0.00 0.00 0.00 0.00 0.90 0.00 0.78 0.00 0.00 0.00 0.00 0.65 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 1.82 0.00 0.00 0.00 0.00 2.70 0.00 0.00 NA 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Rab-RP3 chr3L + chr3L_8290190_8290311 chr3L_8290190_8290308 chr3L_8290121_8290189;chr3L_8290312_8290572 79.47 NA NA NA NA NA NA NA 88.89 NA NA NA NA NA 87.50 NA NA NA NA 71.43 NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA K intron_retention gp210,I_chr2R_1653709_1654789,I_chr2R_1655359_1655422 chr2R + chr2R_1653385_1653444 chr2R_1653384_1653385;chr2R_1653444_1653445 chr2R_1653185_1653384;chr2R_1653445_1653708 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.63 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 4.65 0.00 0.00 NA 0.00 8.00 0.00 2.50 0.00 0.00 16.67 0.00 0.00 0.00 0.00 NA 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention MAPk-Ak2,RI_chrX_5655618_5656137,I_chrX_5656715_5657427,I_chrX_5656715_5657893,I_chrX_5656715_5657974 chrX - chrX_5656678_5658141 chrX_5656677_5656678;chrX_5658141_5658142 chrX_5656615_5656677;chrX_5658142_5658214 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 60.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 73.91 72.97 100.00 100.00 100.00 88.31 87.93 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 81.58 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention RpL27A,E_chr2L_4457411_4457977,I_chr2L_4458058_4458120 chr2L - chr2L_4458058_4458288 chr2L_4458057_4458058;chr2L_4458288_4458289 chr2L_4457978_4458057;chr2L_4458289_4458357 0.43 1.31 0.29 0.20 0.00 0.36 0.96 0.11 0.43 0.00 0.00 0.67 0.60 4.62 0.33 1.86 0.57 1.43 0.44 0.00 0.00 1.52 0.00 0.00 0.00 0.00 5.06 3.33 2.08 0.00 0.00 1.14 0.00 0.26 3.39 1.41 0.75 1.09 2.94 0.00 0.76 0.54 0.31 0.00 0.31 1.01 0.00 0.51 0.40 2.61 2.53 1.08 0.00 0.00 0.40 1.68 1.41 0.39 K jcn_only_AA CG12945,I_chr3R_5615604_5615859,I_chr3R_5615807_5615858,RI_chr3R_5616467_5616560 chr3R - chr3R_5616467_5616560 chr3R_5616494_5616560 chr3R_5616561_5616629;chr3R_5616402_5616466 91.55 89.47 89.41 91.60 92.19 96.97 93.85 90.70 91.79 84.62 90.14 94.52 94.92 84.44 94.52 91.35 91.67 92.75 91.55 86.08 91.55 88.24 93.94 97.66 100.00 90.67 94.82 89.90 91.40 90.20 89.71 95.56 85.85 87.93 86.30 68.75 89.43 90.48 95.14 91.00 88.52 92.41 90.74 94.44 96.00 87.21 94.29 88.68 94.78 94.81 94.02 93.65 96.97 92.31 89.83 92.59 93.88 91.38 K jcn_only_AD Rox8,I_chr3R_19872211_19872659,I_chr3R_19872214_19872630,I_chr3R_19872214_19872636,I_chr3R_19872214_19872838,I_chr3R_19876189_19876240 chr3R - chr3R_19872214_19873834;chr3R_19872214_19873540;chr3R_19872214_19873550 chr3R_19872214_19873682 chr3R_19872114_19872213;chr3R_19873835_19873903 31.73 NA 34.04 36.76 50.00 29.41 18.75 50.00 49.12 NA 35.71 35.85 46.88 28.21 27.78 35.71 42.86 45.83 40.00 50.00 36.36 NA 6.45 NA 25.00 27.03 12.50 NA 16.00 NA 40.48 NA 15.38 45.33 16.67 13.33 NA NA 19.23 NA NA 27.54 38.71 NA NA 27.59 NA 25.00 41.57 NA 23.81 NA 27.27 NA 51.43 NA NA 24.39 K intron_retention eIF-4a,I_chr2L_5985221_5985289 chr2L + chr2L_5985221_5985342 chr2L_5985220_5985221;chr2L_5985342_5985343 chr2L_5985121_5985220;chr2L_5985343_5985389 95.76 94.56 95.29 96.91 95.75 95.13 94.61 96.78 96.02 96.12 95.47 96.10 96.73 97.77 95.63 96.75 95.84 92.65 95.08 96.17 95.74 97.00 96.24 94.84 97.13 95.89 96.38 95.62 97.61 96.55 95.69 94.88 97.32 95.44 95.93 96.31 94.03 95.36 95.26 97.11 96.05 95.55 95.16 95.53 95.76 96.56 95.81 94.90 96.52 95.89 95.90 94.43 95.16 93.30 95.19 95.37 95.18 96.65 K jcn_only_AD POSH,RI_chr2R_13458667_13458738,Rab4,I_chr2R_13461027_13461136 chr2R + chr2R_13458667_13458738 chr2R_13458672_13458738 chr2R_13458739_13458838;chr2R_13458567_13458666 93.10 88.64 87.50 95.65 95.00 NA 97.10 97.78 90.00 89.66 90.32 95.35 NA NA 95.00 93.10 NA 96.97 90.00 96.23 92.59 98.53 92.98 94.44 90.24 96.43 91.38 100.00 94.87 86.21 96.30 NA 96.30 93.02 92.59 94.74 97.67 94.12 87.50 94.00 100.00 95.00 NA 87.93 87.50 85.19 91.30 95.65 88.89 92.59 93.75 92.31 87.50 90.32 100.00 96.15 89.29 92.59 K cassette ben chrX + chrX_13890557_13892127 chrX_13890557_13890648;chrX_13890990_13892127 chrX_13890649_13890989 chrX_13890387_13890556;chrX_13892128_13892800 0.75 0.00 1.69 1.65 1.27 0.79 2.21 0.55 0.95 0.00 0.00 0.82 1.25 0.79 0.67 0.75 0.00 0.00 0.75 1.46 1.12 0.00 0.78 0.00 0.00 0.00 0.00 1.56 0.00 1.37 0.69 1.90 1.12 1.04 1.11 0.00 0.00 0.00 0.00 1.85 0.71 0.42 1.03 0.00 0.63 0.82 0.00 0.74 1.27 0.00 0.88 1.15 1.20 1.06 0.00 0.88 0.00 1.10 K intron_retention CG2017 chr3R - chr3R_1686127_1687891 chr3R_1686126_1686127;chr3R_1687891_1687892 chr3R_1685454_1686126;chr3R_1687892_1688079 14.29 12.82 14.63 33.33 11.43 34.62 13.51 26.00 15.66 7.69 35.48 12.50 20.00 19.44 22.22 26.47 16.67 21.21 21.05 13.41 20.00 5.88 12.50 9.59 16.28 13.33 21.59 14.43 23.53 7.04 15.15 13.16 6.45 22.22 11.63 8.62 4.76 13.51 15.49 15.07 7.41 20.99 19.23 10.77 9.76 10.00 10.64 11.36 24.00 19.64 14.29 11.48 14.29 10.42 19.57 4.48 7.32 9.09 K alternative_donor dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21308996_21309994;chr2L_21308996_21309579 chr2L_21308996_21310000 chr2L_21308992_21308995;chr2L_21310001_21310009 7.28 17.39 9.52 9.68 6.25 11.76 13.79 11.54 13.56 NA 5.00 17.39 6.67 15.79 15.38 16.67 13.33 3.85 17.39 6.45 5.26 4.35 0.00 5.00 5.56 5.88 0.00 NA NA 2.50 12.50 10.00 2.08 18.18 0.00 0.00 11.76 0.00 0.00 NA 7.69 17.02 23.53 4.00 8.33 0.00 9.09 5.13 16.67 NA 7.41 5.26 6.25 0.00 16.00 7.14 6.67 13.33 K intron_retention CG8004 chr3L - chr3L_19920370_19920670 chr3L_19920369_19920370;chr3L_19920670_19920671 chr3L_19920283_19920369;chr3L_19920671_19921380 60.00 NA NA 28.57 87.50 NA 73.33 47.37 61.54 NA 60.00 66.67 NA 70.00 NA 47.06 NA NA 50.00 52.94 NA NA 100.00 66.67 NA NA 66.67 NA NA NA NA NA NA 47.06 NA NA 41.67 87.50 60.00 NA NA 38.10 NA 88.89 NA NA 66.67 NA 57.14 NA 75.00 NA NA NA NA 54.55 41.67 NA K intron_retention CG6659 chrX - chrX_18551009_18551130 chrX_18551008_18551009;chrX_18551130_18551131 chrX_18550747_18551008;chrX_18551131_18551211 2.86 2.47 1.23 2.86 0.00 0.00 4.11 3.51 5.17 0.00 3.23 1.59 0.00 0.00 0.00 0.00 6.12 0.00 0.00 2.27 2.22 11.39 5.65 5.08 5.79 1.75 8.86 9.80 5.68 0.00 5.68 4.17 3.05 3.81 2.80 4.92 3.81 5.00 2.92 2.29 4.11 3.68 1.92 1.09 0.00 4.32 0.93 3.12 3.08 2.50 2.96 5.88 0.00 2.70 2.27 2.67 4.30 1.94 K intron_retention CG5903 chr3R - chr3R_11971429_11971480 chr3R_11971428_11971429;chr3R_11971480_11971481 chr3R_11971276_11971428;chr3R_11971481_11972081 100.00 100.00 98.86 100.00 98.77 98.91 99.36 99.44 99.38 100.00 100.00 99.21 100.00 100.00 100.00 99.34 98.80 100.00 100.00 100.00 100.00 95.12 100.00 99.01 100.00 98.32 99.17 97.87 100.00 97.14 100.00 98.21 100.00 100.00 100.00 100.00 98.51 100.00 100.00 98.89 100.00 98.88 98.80 98.33 100.00 99.08 100.00 100.00 99.32 98.26 100.00 100.00 96.77 100.00 100.00 98.91 100.00 98.11 K intron_retention CG3262 chr2L + chr2L_22240104_22240153 chr2L_22240103_22240104;chr2L_22240153_22240154 chr2L_22239906_22240103;chr2L_22240154_22240402 6.96 5.26 5.97 18.42 8.33 4.62 7.37 4.17 5.94 12.00 7.50 9.70 4.35 5.63 8.57 6.96 7.89 6.94 6.17 3.88 9.62 9.52 11.67 7.69 6.78 10.99 20.90 32.00 16.00 4.84 7.06 4.49 9.47 9.71 7.81 10.00 10.34 6.00 6.94 6.14 6.96 6.67 8.51 0.00 7.50 6.85 5.26 7.41 6.47 12.70 4.00 0.00 0.00 7.46 8.14 4.35 2.02 1.62 K alternative_donor CEI_chr3R_10927927_10937314,CG6934 chr3R - chr3R_10937912_10957499;chr3R_10937912_10957457 chr3R_10937912_10957329 chr3R_10937315_10937911;chr3R_10957500_10957513 94.59 100.00 87.50 93.75 94.12 100.00 92.59 91.67 98.21 100.00 93.75 94.12 93.75 96.77 96.77 96.88 94.12 95.92 96.00 93.55 89.47 88.57 98.36 97.06 96.67 94.12 100.00 96.55 92.86 92.16 100.00 88.24 92.75 97.37 98.08 91.67 95.92 96.43 93.33 94.55 100.00 96.49 100.00 94.44 88.89 96.88 92.31 93.40 94.74 100.00 95.24 96.00 94.44 90.00 96.43 84.21 87.50 94.59 K intron_retention Doa,I_chr3R_24715823_24718923,I_chr3R_24738109_24738303,I_chr3R_24747391_24747896 chr3R + chr3R_24736900_24745213 chr3R_24736899_24736900;chr3R_24745213_24745214 chr3R_24733432_24736899;chr3R_24745214_24745289 100.00 100.00 100.00 61.11 NA 88.89 100.00 92.86 95.24 NA NA 100.00 NA NA 88.89 91.67 100.00 NA 90.00 100.00 NA 90.00 100.00 90.00 90.00 87.50 100.00 NA NA 100.00 100.00 NA 92.31 100.00 88.89 80.00 100.00 NA 100.00 95.24 NA 100.00 100.00 100.00 NA NA NA 94.44 92.86 NA 100.00 NA NA NA 100.00 NA NA NA K jcn_only_AD stai,I_chr2L_6110225_6121773 chr2L + chr2L_6122411_6122977 chr2L_6122854_6122977 chr2L_6122978_6123837 91.18 94.03 91.54 94.35 96.61 91.11 68.89 87.56 93.30 80.39 89.39 90.77 92.47 96.77 92.45 95.43 93.94 81.25 90.35 92.00 93.42 98.32 94.01 88.44 86.84 83.06 92.36 87.88 87.65 93.75 89.71 77.33 92.92 91.46 95.65 66.00 86.73 86.21 86.18 93.29 83.72 91.11 88.89 91.18 75.28 94.85 96.73 71.23 92.59 94.37 94.57 89.29 98.40 96.20 90.84 89.86 91.82 74.29 K alternative_donor CG11686 chr3R + chr3R_9086141_9087326 chr3R_9086209_9087326 chr3R_9087327_9087492;chr3R_9086072_9086140 18.79 NA 4.76 23.53 NA 13.33 NA 19.23 7.14 NA NA 18.52 NA NA 13.33 13.04 25.00 NA NA 26.92 NA NA NA NA NA NA 23.08 NA NA NA 21.05 20.00 NA 25.00 NA NA NA NA 14.29 16.67 NA 26.09 16.67 7.14 19.05 19.23 NA 20.00 10.53 14.29 NA NA 36.36 NA 10.53 NA 25.00 16.33 K intron_retention Cp110,I_chrX_21890195_21895316,I_chrX_21900456_21904601 chrX + chrX_21884377_21884500 chrX_21884376_21884377;chrX_21884500_21884501 chrX_21884340_21884376;chrX_21884501_21884586 93.72 91.67 100.00 100.00 100.00 100.00 85.71 94.74 100.00 88.89 NA 100.00 100.00 94.12 93.33 95.65 91.67 100.00 93.33 92.59 NA NA 84.62 100.00 NA 100.00 90.00 NA NA NA 100.00 NA NA 85.00 91.67 NA 90.91 90.00 90.91 78.95 NA 100.00 92.86 NA 100.00 80.00 90.00 100.00 96.00 92.31 100.00 100.00 NA 87.50 93.33 100.00 88.89 100.00 K intron_retention I_chr3L_7374787_7375310,smid,I_chr3L_7375166_7375310,I_chr3L_7375435_7375508 chr3L + chr3L_7375112_7375310 chr3L_7375111_7375112;chr3L_7375310_7375311 chr3L_7375066_7375111;chr3L_7375311_7375410 1.90 0.00 0.00 5.66 0.00 5.13 4.69 0.00 2.27 0.00 8.33 3.03 0.00 0.00 0.00 3.06 8.33 0.00 0.00 2.13 0.00 0.00 1.90 0.00 2.44 2.17 4.48 3.92 0.00 1.82 0.00 0.00 2.38 1.32 0.00 2.50 0.00 4.17 0.00 2.97 3.23 2.78 3.70 1.94 0.00 2.00 3.17 3.03 5.49 0.00 1.47 0.00 7.14 0.00 3.85 0.00 6.90 0.00 K alternative_donor CG10702,I_chr2L_19068908_19069762 chr2L - chr2L_19069219_19069520 chr2L_19069219_19069470 chr2L_19068203_19069218;chr2L_19069521_19069551 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA 100.00 85.71 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA K intron_retention Ca-P60A,RI_chr2R_19820338_19820541,I_chr2R_19820338_19821424,CEI_chr2R_19820338_19821830,I_chr2R_19820338_19823289 chr2R - chr2R_19820338_19820781 chr2R_19820337_19820338;chr2R_19820781_19820782 chr2R_19820238_19820337;chr2R_19820782_19820969 3.53 1.69 3.01 3.57 2.46 2.33 7.80 3.17 3.14 4.10 4.69 5.41 2.70 2.68 2.21 3.02 0.00 3.15 2.89 3.21 4.13 21.05 6.79 4.44 8.33 4.03 11.36 5.68 6.61 4.35 1.79 0.00 3.72 2.77 6.38 6.09 6.11 5.33 3.25 3.80 4.20 3.53 2.52 5.33 2.22 3.25 2.17 4.60 4.23 7.81 4.65 3.90 3.37 0.00 2.05 2.60 3.41 1.74 K intron_retention CG42390 chr3R + chr3R_17957065_17957822 chr3R_17957064_17957065;chr3R_17957822_17957823 chr3R_17956965_17957064;chr3R_17957823_17957966 6.17 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.52 NA 5.88 NA NA 0.00 0.00 11.54 NA NA 14.29 8.70 NA 6.67 15.00 8.70 NA 5.88 7.41 0.00 NA NA NA 0.00 4.55 NA 2.44 NA 6.45 9.52 NA NA 0.00 NA 11.76 0.00 0.00 K cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2814174 chr2R_2813804_2813977;chr2R_2814097_2814174 chr2R_2813978_2814096 chr2R_2813704_2813803;chr2R_2814175_2814326 8.89 7.69 6.67 6.00 4.35 3.57 7.69 8.89 11.43 9.09 3.85 17.39 14.29 7.50 9.30 14.29 6.45 4.76 8.57 9.46 4.35 36.84 8.54 9.46 15.38 4.76 6.25 17.65 14.81 10.53 7.50 12.20 15.38 5.26 10.00 10.00 12.50 8.51 16.67 10.42 7.50 9.62 0.00 8.06 16.13 8.45 4.00 13.33 7.94 11.11 10.53 15.15 6.82 7.55 10.53 9.88 6.82 5.77 K alternative_acceptor CG17665 chr2R - chr2R_125229_125523 chr2R_125253_125523 chr2R_125524_125714;chr2R_125223_125228 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 K alternative_donor CG17528,RI_chr2R_706735_711409,I_chr2R_706735_711443,I_chr2R_707374_711443 chr2R - chr2R_707442_711443;chr2R_707442_711615 chr2R_707442_711409 chr2R_706793_707441;chr2R_711616_711627 47.06 60.00 60.00 66.67 33.33 60.00 35.29 44.44 65.00 NA NA 75.00 33.33 62.50 NA 64.71 44.44 NA 45.45 41.67 NA NA 50.00 NA 50.00 33.33 75.00 NA NA NA 71.43 NA NA 47.06 80.00 NA NA NA 75.00 37.50 NA 36.36 60.00 40.00 NA NA NA 33.33 30.00 NA 42.86 NA NA NA 44.44 NA NA NA K alternative_donor CG7222 chr2R + chr2R_6701240_6701535;chr2R_6701242_6701535 chr2R_6700970_6701535 chr2R_6701536_6701719;chr2R_6700958_6700969 0.00 0.00 0.00 2.50 0.00 7.14 0.00 2.38 2.17 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 2.50 16.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 8.33 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 5.26 0.00 0.00 12.50 0.00 7.69 0.00 0.00 K intron_retention MRP,F_chr2L_12727117_12736035 chr2L + chr2L_12736814_12737958 chr2L_12736813_12736814;chr2L_12737958_12737959 chr2L_12736758_12736813;chr2L_12737959_12738176 71.43 66.67 73.33 76.19 66.67 66.67 51.72 74.07 84.62 45.45 63.64 55.56 71.43 72.73 90.91 84.21 NA 87.50 83.33 82.35 68.75 75.00 72.22 58.82 83.33 53.33 65.38 73.33 50.00 71.43 NA 54.55 72.22 86.36 60.00 48.15 70.00 NA 81.25 64.71 71.43 80.00 66.67 80.95 63.64 56.25 NA 77.42 90.91 66.67 80.77 69.23 63.64 81.82 82.35 58.33 30.00 52.63 K intron_retention Ddip2,I_chr3L_252776_253313 chr3L - chr3L_252644_252693 chr3L_252643_252644;chr3L_252693_252694 chr3L_252539_252643;chr3L_252694_252775 0.00 0.00 0.00 6.35 2.94 2.86 7.02 0.00 6.25 0.00 0.00 0.00 0.00 3.03 4.17 5.56 0.00 0.00 0.00 1.32 0.00 0.00 6.90 0.00 0.00 9.09 17.65 9.68 0.00 0.00 4.08 0.00 5.56 0.00 3.23 15.38 0.00 0.00 0.00 0.00 11.76 4.48 0.00 0.00 2.70 0.00 0.00 0.00 5.00 5.71 0.00 0.00 0.00 0.00 0.00 5.26 3.45 0.00 K cassette eIF-4a,I_chr2L_5981836_5984010,I_chr2L_5983941_5984010,I_chr2L_5985221_5985289 chr2L + chr2L_5981836_5984010 chr2L_5981836_5983009;chr2L_5983237_5984010 chr2L_5983010_5983236 chr2L_5981737_5981835;chr2L_5984011_5984110 99.98 99.98 99.98 99.99 99.97 100.00 100.00 99.98 99.95 100.00 99.94 99.99 99.97 99.97 99.98 99.98 99.97 99.98 100.00 100.00 99.97 99.89 99.98 99.98 99.97 99.95 99.95 99.94 99.91 100.00 99.90 100.00 100.00 99.98 100.00 100.00 99.97 99.95 99.98 100.00 99.96 99.98 100.00 99.97 99.94 100.00 100.00 99.96 99.99 99.97 99.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG5555 chr3R - chr3R_15004275_15004340 chr3R_15004274_15004275;chr3R_15004340_15004341 chr3R_15003802_15004274;chr3R_15004341_15005132 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 2.94 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 K alternative_acceptor Pabp2,I_chr2R_4020297_4020426 chr2R + chr2R_4020581_4020645 chr2R_4020581_4020642 chr2R_4020447_4020580;chr2R_4020646_4020713 7.41 7.32 7.58 6.90 7.84 8.00 20.83 11.43 7.83 4.35 17.14 6.40 10.00 8.51 8.97 5.36 12.73 8.89 11.86 5.88 12.24 5.56 13.89 0.00 6.25 20.45 4.55 4.35 31.58 7.41 6.00 10.00 4.65 10.00 3.70 14.29 3.57 5.26 18.52 7.94 19.05 7.69 8.93 6.90 6.90 2.56 2.44 6.67 7.34 14.81 3.85 4.17 4.65 0.00 6.94 0.00 8.89 11.11 K intron_retention Nca,CG7646 chr3L + chr3L_19988603_19988728 chr3L_19988602_19988603;chr3L_19988728_19988729 chr3L_19988545_19988602;chr3L_19988729_19988790 0.00 NA NA 12.50 NA NA 0.00 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA 5.26 NA NA NA NA NA NA NA NA NA K intron_retention Edem1,CG32801,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1796496_1796654 chrX_1796495_1796496;chrX_1796654_1796655 chrX_1796425_1796495;chrX_1796655_1796685 50.00 NA NA NA NA NA NA NA 63.64 NA NA 50.00 NA NA NA 23.08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 42.11 NA NA NA NA NA 63.64 NA 60.00 46.67 NA 46.15 NA NA NA NA NA NA 50.00 NA 45.45 NA NA NA NA 61.54 NA NA K intron_retention CG17760 chr2R + chr2R_8515422_8515475 chr2R_8515421_8515422;chr2R_8515475_8515476 chr2R_8515353_8515421;chr2R_8515476_8515553 0.00 0.00 5.56 0.00 0.00 0.00 0.00 4.27 1.75 NA 2.94 5.77 4.76 6.38 0.00 3.66 4.26 0.00 0.00 6.12 0.00 0.00 2.33 0.00 9.38 0.00 1.54 NA NA 0.00 3.77 0.00 0.00 4.44 0.00 5.00 0.00 0.00 0.00 2.38 0.00 2.27 0.00 6.56 0.00 0.00 0.00 0.00 4.12 0.00 10.42 0.00 0.00 0.00 0.00 0.00 1.54 10.34 K intron_retention moody chrX - chrX_1939981_1940048 chrX_1939980_1939981;chrX_1940048_1940049 chrX_1938363_1939980;chrX_1940049_1940544 0.00 0.00 NA NA 0.00 NA NA 6.25 0.00 0.00 0.00 0.00 NA NA NA NA NA NA NA NA NA 4.26 0.00 5.00 5.56 NA 0.00 30.77 NA 0.00 NA NA 0.00 10.53 0.00 NA 3.77 0.00 2.94 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA K intron_retention regucalcin,I_chrX_11910759_11910811 chrX + chrX_11906562_11910035 chrX_11906561_11906562;chrX_11910035_11910036 chrX_11906467_11906561;chrX_11910036_11910754 11.11 NA 5.56 22.22 NA NA NA 12.50 4.35 NA NA 11.11 NA NA 10.53 6.25 NA NA NA 25.00 NA NA NA NA NA NA 17.65 NA NA NA 7.14 NA NA NA NA NA 28.57 NA NA 22.22 NA 12.00 NA NA NA NA NA NA 25.00 NA NA NA 0.00 NA NA 0.00 0.00 NA K intron_retention CG1021,I_chr3R_2217711_2231099,I_chr3R_2217711_2231390,RI_chr3R_2217711_2231463,I_chr3R_2217742_2218601,I_chr3R_2217742_2219453,I_chr3R_2218465_2231390,RI_chr3R_2218465_2231463,I_chr3R_2218682_2231463,I_chr3R_2219634_2231390,RI_chr3R_2231206_2231270,I_chr3R_2231271_2231390,I_chr3R_2231285_2231463,I_chr3R_2231383_2231463 chr3R - chr3R_2217711_2231516 chr3R_2217710_2217711;chr3R_2231516_2231517 chr3R_2217642_2217710;chr3R_2231517_2231563 95.65 93.33 94.12 100.00 93.33 100.00 96.00 96.97 97.83 94.29 100.00 94.59 96.88 100.00 100.00 95.65 94.12 93.75 100.00 94.55 94.12 95.51 95.35 94.44 93.55 95.24 94.12 100.00 96.92 88.10 100.00 87.50 86.36 94.44 95.83 100.00 90.70 95.83 94.44 95.40 89.19 100.00 100.00 100.00 97.37 92.11 96.97 95.59 94.12 97.67 96.30 96.15 96.77 90.91 96.00 85.71 97.83 98.77 K jcn_only_AD Hcf,I_chr4_390281_391716,I_chr4_391783_391844,I_chr4_391787_391885,I_chr4_391984_392875 chr4 + chr4_387389_391716;chr4_390591_391716 chr4_390281_391716 chr4_391717_391782 0.00 0.00 0.00 0.00 0.00 2.08 0.83 0.00 0.72 5.13 0.00 0.00 0.00 0.00 1.45 1.60 0.00 0.00 0.99 1.31 0.00 0.00 0.00 0.00 0.00 2.90 1.96 0.00 0.00 0.00 1.19 2.04 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 3.45 0.93 0.00 0.00 0.00 K jcn_only_AA CG42374,CG9666,noncoding_13463 chr3L + chr3L_19257723_19257927 chr3L_19257723_19257780 chr3L_19257561_19257722;chr3L_19257928_19258543 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083522_8083901 chr2L_8083521_8083522;chr2L_8083901_8083902 chr2L_8083444_8083521;chr2L_8083902_8084154 96.55 100.00 94.44 96.30 100.00 95.00 97.83 100.00 98.00 NA 88.89 100.00 100.00 95.45 100.00 97.92 94.12 92.86 100.00 97.06 91.67 96.55 100.00 78.57 100.00 100.00 100.00 100.00 97.14 95.65 100.00 NA 95.83 96.43 90.91 100.00 92.31 NA NA 100.00 93.33 96.55 100.00 90.00 90.91 93.33 87.50 100.00 97.06 100.00 93.75 80.00 100.00 NA 96.00 NA 90.00 94.74 K intron_retention Ark,I_chr2R_12909344_12909416,RI_chr2R_12912984_12913058 chr2R + chr2R_12910486_12910589 chr2R_12910485_12910486;chr2R_12910589_12910590 chr2R_12910295_12910485;chr2R_12910590_12910834 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 2.04 NA 0.00 0.00 0.00 NA 0.00 2.63 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 2.78 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K alternative_donor F_chr2L_15260838_15261717,cul-3 chr2L - chr2L_15271144_15271833;chr2L_15271144_15271322 chr2L_15271144_15271202 chr2L_15270905_15271143;chr2L_15271834_15271894 11.43 10.26 8.33 10.28 7.50 10.53 10.58 11.34 10.81 26.67 12.50 13.46 13.21 8.89 15.00 11.63 11.76 6.67 9.09 17.78 8.89 31.82 12.50 10.71 15.62 7.94 10.17 14.29 16.67 16.67 17.31 5.26 20.59 9.90 11.36 8.82 13.51 11.43 12.20 14.75 16.67 9.09 10.87 14.55 14.29 13.33 14.29 20.45 11.93 8.11 12.73 10.00 5.56 5.26 11.11 10.34 11.11 17.86 K multi_cassette CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2439831_2459590 chr3L_2439831_2443389;chr3L_2443839_2443987;chr3L_2444088_2444498;chr3L_2446102_2459590 chr3L_2443390_2443838;chr3L_2443988_2444087;chr3L_2444499_2446101 chr3L_2439731_2439830;chr3L_2459591_2459690 100.00 85.71 87.50 91.67 100.00 100.00 100.00 100.00 90.91 87.50 100.00 90.91 100.00 100.00 100.00 100.00 100.00 83.33 83.33 90.00 100.00 88.46 100.00 92.31 100.00 100.00 92.31 100.00 93.75 90.91 100.00 88.89 94.12 100.00 88.89 100.00 92.86 90.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 90.00 91.67 100.00 85.71 100.00 80.00 87.50 88.89 100.00 100.00 N alternative_donor myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_715043_716322;chr4_715043_716482;chr4_715043_716613;chr4_715043_715839 chr4_715043_716708 chr4_714007_715042;chr4_716709_716712 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Mmp2,F_chr2R_5503009_5525004,I_chr2R_5503009_5545098,noncoding_5512,mir-307,I_chr2R_5525019_5525078,F_chr2R_5525173_5529068,F_chr2R_5529263_5530709,F_chr2R_5530982_5545098,noncoding_5513,F_chr2R_5545246_5548876,F_chr2R_5549099_5549692,F_chr2R_5549824_5554869 chr2R - chr2R_5503009_5554869 chr2R_5503008_5503009;chr2R_5554869_5554870 chr2R_5502983_5503008;chr2R_5554870_5554963 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 1.09 0.00 2.22 0.00 1.37 0.00 0.00 2.44 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 K alternative_donor pAbp,I_chr2R_14027838_14028996 chr2R + chr2R_14028460_14028992 chr2R_14028922_14028992 chr2R_14028993_14029177;chr2R_14028264_14028459 21.54 21.18 21.54 20.00 26.19 20.97 20.00 15.38 15.29 45.45 20.69 17.09 17.91 14.29 21.43 13.41 22.64 17.78 21.31 22.83 17.24 37.08 41.07 70.83 61.11 19.61 38.60 45.45 44.44 22.73 21.31 19.05 13.46 22.83 27.27 33.33 55.56 28.17 55.56 30.30 14.58 20.00 23.81 14.15 38.46 19.44 29.17 16.67 20.33 36.11 30.00 37.84 38.24 19.05 19.05 33.33 54.84 14.00 K alternative_acceptor Mtch,RI_chr3L_184729_185366,I_chr3L_185367_185925 chr3L + chr3L_184682_184777 chr3L_184682_184774 chr3L_184674_184681;chr3L_184778_184854 78.12 83.33 74.19 70.59 58.82 59.09 76.92 80.00 73.68 83.33 70.00 81.08 56.25 80.95 78.12 84.00 70.00 76.19 69.57 73.91 66.67 76.47 95.83 85.71 92.31 85.00 92.59 81.82 80.00 94.44 73.68 75.00 72.73 72.50 92.86 84.21 84.21 89.47 83.33 71.67 71.43 73.33 80.00 88.89 65.52 85.29 94.12 64.86 74.47 92.31 96.88 76.47 75.00 100.00 65.71 85.71 95.24 61.76 K intron_retention CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8174469_8174535 chr2L_8174468_8174469;chr2L_8174535_8174536 chr2L_8174349_8174468;chr2L_8174536_8174698 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,I_chr2R_20289332_20290093 chr2R - chr2R_20283680_20283755 chr2R_20283699_20283755 chr2R_20283756_20283824;chr2R_20283566_20283679 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 76.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD RpL8,I_chr3L_2587513_2587750,I_chr3L_2587600_2587750,RI_chr3L_2587690_2587750,I_chr3L_2589746_2592161 chr3L + chr3L_2587600_2587750;chr3L_2587690_2587750 chr3L_2587514_2587750 chr3L_2587751_2587850;chr3L_2587500_2587513 99.94 99.86 100.00 99.96 99.98 100.00 99.96 99.96 99.95 99.97 100.00 99.98 99.86 99.90 99.98 100.00 99.98 100.00 99.98 99.96 99.93 99.84 99.93 99.96 99.94 99.96 99.94 99.95 99.95 99.84 99.76 99.95 99.94 99.94 99.53 99.85 99.97 99.91 99.92 99.86 99.96 99.98 100.00 99.87 99.93 99.83 99.79 99.86 99.94 99.86 99.77 99.81 99.80 99.40 99.94 99.92 99.83 99.98 K alternative_acceptor shep,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5155644_5156066;chr3L_5155732_5156066 chr3L_5155711_5156066 chr3L_5156067_5156229;chr3L_5155556_5155643 95.92 95.50 96.05 89.96 94.69 96.05 95.65 96.30 95.12 95.80 97.18 96.38 92.37 96.48 95.93 96.36 94.57 96.55 95.86 95.92 95.92 96.52 94.48 94.12 93.14 93.65 98.29 98.17 94.68 94.80 95.45 95.27 96.53 93.92 95.97 92.49 95.60 97.09 97.69 96.89 93.44 96.25 96.67 97.75 96.61 96.30 95.93 96.10 96.09 93.15 94.08 96.20 95.54 98.59 95.92 94.44 94.12 97.22 K jcn_only_AA CG10732,I_chr3L_13438999_13439071 chr3L + chr3L_13438999_13439111 chr3L_13438999_13439108 chr3L_13438899_13438998;chr3L_13439112_13439171 24.00 33.33 15.38 17.95 26.09 35.00 21.43 26.32 20.00 21.43 42.31 25.00 NA NA 20.00 6.25 NA 19.05 NA 24.00 NA 16.98 20.93 18.75 21.43 20.00 20.83 17.95 19.35 38.89 39.13 16.67 31.43 34.48 18.18 26.92 22.37 20.69 39.13 30.43 NA 17.78 16.67 31.91 33.33 NA 26.67 25.93 26.19 28.57 16.67 24.00 19.23 32.00 30.30 29.63 32.35 31.82 K jcn_only_AD CG31855 chr2L + chr2L_13369319_13369385 chr2L_13369324_13369385 chr2L_13369386_13370334;chr2L_13369210_13369318 98.78 100.00 95.83 98.73 NA 96.77 100.00 97.40 98.82 NA 100.00 99.06 100.00 97.73 98.15 96.45 100.00 100.00 100.00 98.95 94.23 95.71 98.00 100.00 90.62 100.00 100.00 100.00 100.00 93.94 100.00 97.78 100.00 98.85 98.31 100.00 97.73 100.00 96.88 100.00 NA 98.73 97.78 97.50 100.00 98.82 97.44 95.65 100.00 100.00 100.00 100.00 96.88 97.26 96.00 98.51 98.20 93.62 K jcn_only_AD Pif1B,Pif1A,I_chr3R_4624232_4625183 chr3R - chr3R_4619090_4622426 chr3R_4619090_4619699 chr3R_4618826_4619089 4.35 5.71 6.25 0.00 0.00 4.35 3.28 1.32 4.85 NA 2.38 4.55 3.23 6.45 4.44 5.71 2.70 3.70 4.55 5.43 18.60 5.62 4.76 5.00 0.00 2.00 0.00 0.00 5.17 1.33 1.69 4.00 1.52 8.97 10.53 5.56 2.38 2.70 6.90 6.45 4.88 5.95 6.45 0.00 4.44 2.38 NA 4.35 1.20 0.00 8.06 15.00 6.90 4.55 4.08 0.00 2.04 0.00 K intron_retention Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16109720_16110644 chr3L_16109719_16109720;chr3L_16110644_16110645 chr3L_16109657_16109719;chr3L_16110645_16111208 13.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.38 NA NA NA NA NA NA NA NA NA NA NA NA NA 10.53 NA NA 25.00 NA NA NA NA 11.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor Tis11,CR33963 chrX + chrX_12553582_12554640 chrX_12553582_12554566 chrX_12553495_12553581;chrX_12554641_12554665 100.00 100.00 100.00 95.74 100.00 100.00 100.00 100.00 98.61 100.00 100.00 98.18 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 96.30 100.00 100.00 100.00 95.45 100.00 100.00 96.97 96.55 97.22 100.00 100.00 97.96 95.65 100.00 100.00 88.89 100.00 100.00 94.12 98.36 100.00 100.00 100.00 100.00 100.00 98.28 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG6673,CG6662 chr3L - chr3L_8516322_8516834 chr3L_8516322_8516500 chr3L_8516253_8516321;chr3L_8516835_8516849 100.00 100.00 98.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 100.00 98.67 100.00 99.25 100.00 100.00 100.00 100.00 98.15 100.00 99.01 100.00 100.00 98.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 97.60 100.00 100.00 100.00 100.00 100.00 100.00 98.73 100.00 98.99 100.00 99.21 K alternative_donor glo,I_chr3R_7644679_7644739,REI_chr3R_7644679_7644932,RI_chr3R_7644683_7644880,I_chr3R_7647556_7647628 chr3R - chr3R_7644683_7644880;chr3R_7644683_7644932;chr3R_7644683_7644739;chr3R_7644683_7644908 chr3R_7644683_7644743 chr3R_7644583_7644682;chr3R_7644933_7644980 3.33 3.03 1.64 5.56 4.35 2.13 13.10 4.55 2.83 0.00 8.33 2.68 6.25 0.00 4.62 2.36 4.00 NA 4.84 2.38 0.00 5.15 2.61 3.85 3.92 6.52 1.98 2.30 5.77 2.83 3.70 2.44 3.41 3.81 1.61 0.00 3.39 2.22 4.62 3.08 5.45 4.46 5.00 3.09 5.45 3.57 3.28 2.54 3.73 1.75 2.74 7.14 0.00 3.45 4.76 2.35 2.20 1.67 K jcn_only_AD CG9795,I_chr3R_150391_150451 chr3R + chr3R_150391_150451 chr3R_150395_150451 chr3R_150452_150533;chr3R_150310_150390 100.00 100.00 100.00 100.00 96.67 100.00 98.08 98.65 100.00 100.00 NA 98.41 100.00 100.00 100.00 100.00 100.00 NA 100.00 99.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 98.21 100.00 100.00 100.00 100.00 97.78 98.18 100.00 98.11 100.00 100.00 100.00 100.00 100.00 100.00 98.73 100.00 100.00 98.77 98.73 100.00 100.00 100.00 100.00 100.00 96.43 100.00 98.31 K intron_retention CG3589 chr2R + chr2R_20672267_20672323 chr2R_20672266_20672267;chr2R_20672323_20672324 chr2R_20672157_20672266;chr2R_20672324_20672783 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.45 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 6.25 4.17 6.67 0.00 7.41 0.00 0.00 0.00 0.00 19.05 0.00 0.00 0.00 0.00 5.41 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 K jcn_only_AA Eno,I_chr2L_1726650_1727645,I_chr2L_1726656_1727485,EI_chr2L_1727403_1727645,I_chr2L_1728229_1728302 chr2L - chr2L_1726656_1727645;chr2L_1727403_1727645;chr2L_1727559_1727645 chr2L_1726650_1727645 chr2L_1727646_1727735;chr2L_1726556_1726649 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.09 0.11 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.16 0.10 0.00 0.24 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.09 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.20 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.25 0.00 K jcn_only_AD Cam,I_chr2R_8161049_8161270 chr2R + chr2R_8146964_8147544 chr2R_8146971_8147544 chr2R_8147545_8147693;chr2R_8146944_8146963 0.00 0.00 0.00 0.07 0.34 0.22 0.32 0.09 0.05 0.00 0.17 0.18 0.16 0.00 0.72 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.52 0.99 0.35 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.16 0.33 0.67 0.00 0.00 0.08 0.17 0.17 0.00 0.30 0.00 0.00 0.40 0.34 0.00 0.00 0.00 0.00 0.13 0.00 0.19 0.29 K intron_retention Bruce chr3R - chr3R_6143271_6143329 chr3R_6143270_6143271;chr3R_6143329_6143330 chr3R_6141973_6143270;chr3R_6143330_6143793 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 7.46 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA K jcn_only_AA CG17490 chr2L + chr2L_22431301_22432684 chr2L_22431301_22431358 chr2L_22431022_22431300;chr2L_22432685_22433056 75.50 NA NA NA NA NA 100.00 NA 69.44 NA 58.62 76.00 NA NA NA NA NA NA 80.95 66.67 76.19 91.30 NA NA NA NA NA NA NA 65.38 90.12 NA 77.42 74.07 NA NA NA 79.17 NA 84.21 90.48 62.07 61.90 73.33 95.00 88.57 NA 71.43 66.67 NA 90.00 NA NA NA NA 75.00 69.57 67.39 K jcn_only_AA CG14903,RI_chr3R_12399116_12399254 chr3R - chr3R_12399116_12399254 chr3R_12399123_12399254 chr3R_12399255_12399354;chr3R_12399016_12399115 99.19 99.07 100.00 100.00 100.00 98.53 97.83 99.17 99.37 97.78 100.00 99.20 98.25 100.00 96.94 97.53 96.08 98.82 98.63 98.56 98.75 100.00 100.00 99.22 100.00 95.38 100.00 100.00 97.10 98.00 98.70 98.80 100.00 100.00 100.00 100.00 97.47 100.00 100.00 98.50 98.31 98.08 100.00 100.00 100.00 97.39 99.34 100.00 100.00 99.25 99.17 98.55 100.00 99.19 97.73 100.00 98.84 98.39 K alternative_acceptor CG9008 chr2L - chr2L_13775048_13775254 chr2L_13775186_13775254 chr2L_13775255_13775406;chr2L_13774837_13775047 27.27 27.27 21.43 42.86 44.44 20.00 NA 40.00 33.33 NA NA 22.22 NA NA 27.27 NA 30.00 NA 50.00 36.84 NA 37.50 30.00 NA NA NA NA NA 33.33 NA 25.00 NA NA 25.00 25.00 NA 23.08 18.18 18.18 17.65 NA 30.77 NA 34.62 17.65 30.77 13.04 NA 16.67 36.36 12.50 NA NA NA 28.57 40.00 NA 23.08 K intron_retention CG17683,I_chr2R_18774_18869,I_chr2R_19002_19060 chr2R + chr2R_19002_19060 chr2R_19001_19002;chr2R_19060_19061 chr2R_18902_19001;chr2R_19061_19124 100.00 100.00 100.00 97.96 100.00 100.00 98.25 98.04 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 98.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 98.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 97.06 100.00 98.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG14445 chrX + chrX_6133268_6133420 chrX_6133267_6133268;chrX_6133420_6133421 chrX_6132979_6133267;chrX_6133421_6133444 36.84 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.84 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG8034 chrX - chrX_19177227_19177389 chrX_19177226_19177227;chrX_19177389_19177390 chrX_19177035_19177226;chrX_19177390_19178851 1.23 0.42 0.00 1.95 1.37 0.71 1.57 1.53 1.72 1.48 0.60 0.58 1.22 1.61 1.58 0.77 1.90 1.23 1.34 1.36 0.99 2.27 0.62 1.39 1.06 1.16 1.30 1.13 1.56 1.15 4.04 2.30 2.48 1.25 0.62 1.11 0.69 0.83 1.63 0.80 2.35 2.67 1.20 0.63 1.75 1.52 0.57 3.12 1.87 0.41 1.88 0.63 0.00 1.02 1.75 0.44 0.93 0.00 K alternative_donor CG12079,CG14964 chr3L - chr3L_3159349_3159408 chr3L_3159349_3159404 chr3L_3159274_3159348;chr3L_3159409_3159555 1.15 0.00 0.00 1.15 0.00 0.00 2.30 1.92 0.00 0.00 3.03 0.00 0.00 0.00 0.81 1.00 0.00 2.20 0.00 1.19 1.16 1.27 1.53 1.00 1.83 4.41 3.57 4.35 5.83 0.81 3.67 2.11 0.00 1.63 2.78 0.88 0.45 2.07 0.81 0.84 1.39 1.08 0.00 2.44 2.19 2.45 1.10 3.54 0.66 2.35 1.59 0.88 0.00 1.22 0.93 2.38 0.00 1.44 K intron_retention ari-1,I_chrX_18026911_18026975 chrX - chrX_18031084_18031608 chrX_18031083_18031084;chrX_18031608_18031609 chrX_18030475_18031083;chrX_18031609_18031714 19.25 25.00 27.78 31.82 NA 23.08 22.58 20.59 16.00 6.67 13.33 19.44 40.00 15.00 25.00 20.00 15.00 21.05 22.22 14.29 22.73 16.00 19.05 15.38 18.75 20.00 20.00 NA 5.56 20.00 18.18 NA 2.56 16.00 NA NA 23.81 NA 14.29 28.57 NA 24.24 23.08 10.00 NA 6.67 7.14 10.71 26.32 NA NA NA NA NA 16.67 NA NA 3.85 K intron_retention CG33051,CG33052 chr3L - chr3L_17419771_17419827 chr3L_17419770_17419771;chr3L_17419827_17419828 chr3L_17419383_17419770;chr3L_17419828_17419956 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 6.67 NA NA NA NA NA NA 4.35 NA NA 0.00 NA 6.67 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon Hrs,I_chr2L_2740474_2741107 chr2L + chr2L_2740474_2741107 chr2L_2740474_2740519 chr2L_2741108_2741482 chr2L_2740520_2741097 chr2L_2740389_2740473 95.35 98.41 97.96 91.36 95.35 95.35 94.87 95.00 98.02 93.33 97.62 98.88 97.92 90.48 94.83 96.08 97.62 97.73 97.92 98.88 97.56 90.00 94.32 91.36 95.92 94.74 97.18 95.16 92.50 89.80 82.61 89.19 96.30 97.22 97.83 94.92 93.18 95.16 95.40 98.51 92.31 96.94 95.00 92.00 97.56 97.83 98.39 96.88 94.32 93.62 94.29 92.68 93.33 95.45 98.21 95.74 94.23 92.31 K alternative_acceptor CG5872,RI_chr3L_20430213_20430346,RI_chr3L_20430213_20430358 chr3L + chr3L_20430213_20430353;chr3L_20430213_20430346 chr3L_20430213_20430358 chr3L_20430113_20430212;chr3L_20430359_20430446 14.29 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 14.29 NA NA NA NA NA NA NA NA 12.50 NA NA NA 14.29 NA 25.00 11.11 NA NA NA NA NA NA NA NA 35.29 K intron_retention Nipped-B,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_615630_615684 chr2R_615629_615630;chr2R_615684_615685 chr2R_615514_615629;chr2R_615685_615856 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 7.41 0.00 3.57 6.67 0.00 0.00 0.00 NA 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.35 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA K cassette CG7766,I_chrX_8993495_8994545,I_chrX_8991338_8991387 chrX - chrX_8989685_8991387;chrX_8990009_8991387 chrX_8989685_8990798,chrX_8990009_8990798;chrX_8990859_8991387 chrX_8990799_8990858 chrX_8989428_8989684;chrX_8991388_8991487 27.03 28.30 21.28 16.39 25.93 36.11 42.37 26.76 28.41 39.47 12.00 28.75 30.00 31.43 32.65 24.07 22.50 57.58 11.90 37.38 29.03 16.18 23.76 23.66 30.51 13.64 27.40 16.98 8.14 20.55 29.73 25.00 33.33 26.87 29.51 22.35 18.52 18.29 21.98 25.69 40.28 27.06 26.32 16.25 32.94 31.40 37.93 23.73 27.03 30.77 26.67 24.07 41.18 24.32 35.29 38.18 35.59 41.94 K intron_retention Gpo-1,I_chr2R_11747621_11747699,EI_chr2R_11747445_11747699,I_chr2R_11749758_11750187,I_chr2R_11756325_11756380 chr2R - chr2R_11748259_11750187 chr2R_11748258_11748259;chr2R_11750187_11750188 chr2R_11748106_11748258;chr2R_11750188_11750219 0.00 0.00 0.00 0.00 NA 0.00 1.96 0.00 7.50 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 NA 0.00 0.00 0.00 4.44 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 2.63 0.00 NA 3.08 0.00 0.00 1.75 3.70 0.00 5.26 3.12 0.00 0.00 0.00 4.55 0.00 NA 0.00 K alternative_donor CG10600,I_chr2L_18836445_18836522,RI_chr2L_18838793_18838882 chr2L - chr2L_18836445_18836522 chr2L_18836445_18836518 chr2L_18836345_18836444;chr2L_18836523_18836622 100.00 100.00 100.00 96.00 100.00 100.00 96.00 100.00 97.87 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 90.91 93.75 97.44 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 95.83 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 96.67 98.00 94.44 91.67 100.00 93.33 100.00 100.00 94.12 100.00 100.00 100.00 100.00 97.37 100.00 90.91 100.00 94.12 100.00 94.12 100.00 K intron_retention noncoding_6391 chr2R + chr2R_8593142_8609809 chr2R_8593141_8593142;chr2R_8609809_8609810 chr2R_8592989_8593141;chr2R_8609810_8610257 6.25 0.00 3.85 2.86 NA 0.00 6.67 12.24 3.51 NA 0.00 10.00 7.41 0.00 8.11 5.41 0.00 0.00 9.68 5.77 0.00 NA 6.90 0.00 NA 8.33 5.26 12.50 12.00 0.00 0.00 NA 18.18 4.65 11.11 6.67 NA 0.00 NA 5.56 7.14 6.98 10.53 10.00 NA 10.71 5.56 8.33 7.55 NA 0.00 6.25 12.50 NA 4.88 NA NA 13.64 K intron_retention Neu3,I_chr3R_10493378_10493462,I_chr3R_10493378_10494080 chr3R - chr3R_10493378_10494587 chr3R_10493377_10493378;chr3R_10494587_10494588 chr3R_10493278_10493377;chr3R_10494588_10494717 95.38 96.84 95.65 96.58 95.65 97.96 93.24 97.27 92.62 88.68 100.00 95.45 97.67 98.46 96.20 96.88 100.00 95.35 96.15 97.64 94.83 90.60 89.19 94.85 95.38 97.83 95.16 98.73 89.47 94.74 93.10 97.47 97.89 94.68 90.91 91.67 95.27 90.48 95.28 95.04 96.08 92.62 88.24 91.98 94.31 92.96 95.51 92.81 96.46 95.40 96.30 91.55 98.21 98.55 95.40 96.77 90.62 91.57 K cassette ens,I_chr3L_4130719_4131120 chr3L - chr3L_4129792_4131120;chr3L_4127163_4131120 chr3L_4129792_4130388,chr3L_4127163_4130388;chr3L_4130644_4131120 chr3L_4130389_4130643 chr3L_4126989_4127162;chr3L_4131121_4131220 1.05 0.66 1.22 1.20 0.80 0.64 2.38 1.32 1.07 0.87 1.80 6.21 0.77 0.69 1.28 1.20 1.44 1.54 0.69 2.05 0.90 1.60 0.84 1.48 1.33 1.21 1.48 0.65 0.50 0.91 0.52 1.03 1.90 1.21 1.17 2.03 0.79 1.20 0.43 1.22 0.69 0.90 0.83 1.04 0.00 0.75 0.73 1.78 0.87 0.89 1.26 1.55 1.14 1.03 1.05 0.85 1.37 0.85 K jcn_only_AA CG2064 chr2R + chr2R_3553522_3553627;chr2R_3553522_3553619 chr2R_3553522_3553650 chr2R_3553444_3553521;chr2R_3553651_3553914 98.78 99.08 97.88 98.10 100.00 99.05 98.63 98.92 99.37 98.31 100.00 98.90 98.72 98.36 99.10 98.25 96.80 98.78 99.55 99.41 99.35 98.72 98.88 98.30 97.01 99.25 98.58 97.92 98.83 99.51 97.01 98.58 98.06 99.44 98.71 98.95 98.07 99.58 100.00 98.06 97.46 99.27 100.00 98.45 96.85 98.55 98.57 97.71 99.04 99.35 98.95 98.32 99.48 98.31 100.00 98.38 99.55 98.79 K intron_retention CG11984,I_chr3R_4837327_4837766,F_chr3R_4838081_4838479,I_chr3R_4845450_4845598 chr3R - chr3R_4838028_4838558 chr3R_4838027_4838028;chr3R_4838558_4838559 chr3R_4837981_4838027;chr3R_4838559_4838579 0.00 1.59 3.03 4.05 0.00 0.00 0.00 0.00 0.00 3.45 0.00 4.90 3.12 0.00 1.56 8.89 0.00 0.00 0.00 1.68 0.00 0.76 0.00 0.00 0.00 0.00 6.25 1.72 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 1.75 0.00 0.00 0.00 1.43 0.00 2.08 4.12 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2392054 chrX_2387249_2388436;chrX_2388671_2389073;chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054 chrX_2388437_2388670;chrX_2389074_2389271;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2392055_2392148 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA 66.67 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA K intron_retention exd chrX + chrX_15886650_15887520 chrX_15886649_15886650;chrX_15887520_15887521 chrX_15886529_15886649;chrX_15887521_15887806 92.86 86.96 95.45 93.55 95.24 100.00 96.00 94.12 93.62 93.33 93.75 97.50 94.12 95.24 95.83 88.00 95.00 90.48 84.21 91.11 100.00 71.88 89.80 92.59 100.00 100.00 96.15 92.31 100.00 88.24 93.55 90.91 53.85 82.35 95.24 95.45 88.89 85.19 87.10 73.08 NA 92.86 95.00 96.67 NA 82.35 85.71 87.50 88.64 94.74 87.88 96.30 92.86 87.50 91.67 87.50 94.74 90.00 K intron_retention Pros28_1,REI_chrX_16172581_16177702 chrX + chrX_16170553_16170629 chrX_16170552_16170553;chrX_16170629_16170630 chrX_16170322_16170552;chrX_16170630_16170859 0.35 0.35 0.00 0.42 0.00 0.00 0.17 0.30 0.44 0.76 0.00 0.36 0.00 0.55 0.48 0.00 0.26 0.00 0.27 0.58 0.00 0.00 0.55 0.00 0.51 0.00 0.95 2.68 0.88 0.55 0.17 0.00 0.00 0.42 0.69 0.22 0.42 0.37 0.24 0.17 0.00 0.48 2.04 0.00 0.41 0.35 0.35 0.72 0.49 0.21 0.37 0.00 0.00 0.62 0.00 0.37 0.54 0.35 K alternative_acceptor meso18E,I_chrX_19601491_19601568 chrX - chrX_19601491_19601568 chrX_19601498_19601568 chrX_19601569_19601635;chrX_19601429_19601490 100.00 100.00 100.00 100.00 100.00 98.33 100.00 98.73 99.23 98.18 100.00 100.00 100.00 97.62 100.00 100.00 100.00 98.00 100.00 100.00 100.00 99.42 100.00 100.00 100.00 100.00 100.00 97.94 100.00 99.16 100.00 100.00 99.47 100.00 100.00 98.67 99.32 100.00 99.35 99.41 99.14 99.02 100.00 100.00 99.24 98.44 98.99 99.21 100.00 100.00 99.12 98.00 100.00 100.00 98.33 98.81 99.12 99.36 K jcn_only_AD CG8412,I_chr3R_5583152_5583200 chr3R + chr3R_5582916_5582977 chr3R_5582920_5582977 chr3R_5582978_5583151;chr3R_5582787_5582915 68.07 72.00 NA 91.67 NA NA 87.10 80.56 68.75 NA NA 65.12 NA NA 85.00 NA NA NA NA 64.71 NA 70.59 61.82 68.57 50.00 NA 62.50 67.50 72.00 65.00 60.00 NA 69.23 81.82 NA 51.72 61.90 64.29 65.79 73.97 NA 67.57 86.36 73.21 54.55 65.38 81.48 60.00 80.00 67.35 62.79 NA NA 76.00 83.33 53.33 77.27 NA K jcn_only_AA trc,I_chr3L_19826244_19826323 chr3L - chr3L_19825813_19825869 chr3L_19825825_19825869 chr3L_19825870_19825976;chr3L_19825328_19825812 18.07 6.25 17.14 30.77 18.92 14.29 22.50 23.08 19.51 6.12 10.26 16.46 24.39 27.27 18.42 22.22 16.00 10.81 34.48 18.75 11.11 18.07 15.00 18.52 17.24 11.11 19.05 34.44 9.09 26.67 31.91 19.44 19.12 19.57 18.03 15.79 16.28 10.75 21.31 20.83 16.92 19.28 8.11 22.22 21.67 8.70 10.91 14.81 23.21 21.21 8.00 17.78 20.69 28.57 16.98 11.59 17.31 14.52 K jcn_only_AA Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8463480_8463539 chr3L_8463480_8463530 chr3L_8463385_8463479;chr3L_8463540_8463583 45.64 37.93 NA 65.38 NA NA NA 43.48 69.23 NA NA 43.75 NA NA NA NA NA NA NA 52.38 NA 70.00 50.00 35.71 NA NA 40.00 NA 38.46 54.84 NA NA NA NA NA 54.55 64.29 35.71 52.78 45.45 NA 59.26 NA 38.71 NA 61.90 43.75 50.00 45.83 32.26 37.21 42.31 35.48 35.48 NA 52.38 50.00 NA K cassette CaMKII,RI_chr4_1068775_1069812,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1068775_1069812 chr4_1068775_1069129;chr4_1069185_1069812 chr4_1069130_1069184 chr4_1068675_1068774;chr4_1069813_1069872 96.94 96.00 97.96 92.13 96.30 100.00 90.41 98.86 95.35 100.00 96.15 98.65 100.00 94.44 97.56 97.53 97.37 96.88 98.48 96.59 93.75 100.00 97.50 96.00 94.74 87.18 96.77 91.67 92.86 95.00 100.00 94.44 96.00 98.77 96.30 95.45 93.75 100.00 100.00 100.00 100.00 100.00 97.67 96.67 100.00 95.83 95.00 100.00 96.94 95.65 96.55 100.00 100.00 100.00 98.48 94.44 100.00 100.00 K intron_retention Adf1,CG15908_CG9410 chr2R + chr2R_2549954_2550073 chr2R_2549953_2549954;chr2R_2550073_2550074 chr2R_2549797_2549953;chr2R_2550074_2550262 25.00 28.12 19.51 27.45 23.81 18.18 38.46 20.31 24.59 25.00 39.13 22.03 17.86 29.63 29.79 18.37 16.67 18.52 17.14 23.38 32.14 56.00 28.21 18.18 47.83 50.00 47.37 21.43 52.00 33.33 15.62 23.53 33.33 23.08 25.00 48.15 25.00 26.67 34.29 36.96 50.00 26.98 25.00 31.43 33.33 26.67 34.62 47.37 20.00 23.53 28.57 20.00 22.73 25.00 18.18 18.18 8.33 24.32 K alternative_donor bdg,I_chr2R_11824086_11824186,CEI_chr2R_11826763_11827279 chr2R - chr2R_11815130_11819241 chr2R_11815130_11819028 chr2R_11814250_11815129;chr2R_11819242_11819419 10.39 3.33 11.43 11.11 11.11 9.09 9.80 10.53 8.11 0.00 7.41 13.24 7.69 10.81 8.89 10.34 8.57 10.34 12.50 17.31 3.85 13.64 6.90 10.91 9.09 11.76 13.33 12.00 20.59 15.62 11.11 13.33 15.38 11.48 6.52 14.63 9.30 5.00 10.26 9.52 10.00 10.00 11.76 8.89 11.76 9.09 6.67 14.89 10.45 3.45 8.33 12.50 13.33 NA 10.26 10.71 5.26 15.00 K alternative_acceptor deltaCOP,I_chrX_1754047_1754089,I_chrX_1755132_1755191,E_chrX_1755139_1755188,I_chrX_1757755_1757801 chrX - chrX_1754655_1754718 chrX_1754658_1754718 chrX_1754719_1755131;chrX_1754460_1754654 15.92 17.28 15.49 13.59 18.44 15.52 15.90 14.16 15.76 15.94 12.97 15.59 13.01 17.02 15.85 15.62 12.72 13.33 15.69 17.80 16.57 19.11 16.76 16.67 17.02 14.55 19.26 24.40 15.04 14.42 14.12 16.30 16.60 14.64 16.07 14.20 18.74 17.88 19.09 17.63 17.90 16.04 18.90 17.51 12.29 15.92 12.50 18.52 12.59 14.37 16.79 17.57 14.86 17.65 11.85 14.38 15.12 17.14 K alternative_donor CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_239517_240516;chr4_239517_239863 chr4_239517_240531 chr4_239079_239516;chr4_240532_240654 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.80 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 2.78 2.33 0.00 0.00 0.00 0.00 5.26 0.00 0.00 4.55 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention lin-28 chr3L + chr3L_5650074_5650135 chr3L_5650073_5650074;chr3L_5650135_5650136 chr3L_5649923_5650073;chr3L_5650136_5650470 0.00 NA NA NA NA NA 9.52 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 3.23 7.14 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA K multi_cassette CG31522,I_chr3R_270285_272146,I_chr3R_270285_272461,I_chr3R_271138_271887,I_chr3R_272255_272359,RI_chr3R_273677_279264 chr3R - chr3R_270285_272461 chr3R_270285_271053;chr3R_271138_271887;chr3R_271969_272146;chr3R_272255_272461 chr3R_271054_271137;chr3R_271888_271968;chr3R_272147_272254 chr3R_270228_270284;chr3R_272462_272544 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA NA NA NA NA 75.00 NA 100.00 NA 100.00 NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA NA 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 NA NA 100.00 NA K alternative_donor CG1970,I_chr4_590803_590943,I_chr4_590970_591026,I_chr4_590970_591030 chr4 - chr4_590970_591026;chr4_590970_591030 chr4_590970_591034 chr4_590944_590969;chr4_591035_591043 99.57 100.00 100.00 99.55 99.30 100.00 99.43 99.27 99.72 98.80 100.00 99.67 99.25 99.29 98.96 100.00 100.00 100.00 99.35 100.00 100.00 100.00 99.56 99.20 100.00 100.00 98.38 99.21 99.10 100.00 98.58 99.40 99.16 100.00 100.00 98.44 99.69 99.57 99.58 99.17 100.00 99.64 100.00 99.30 99.60 99.64 99.45 98.17 99.67 99.35 99.57 99.32 100.00 99.12 99.55 99.49 100.00 99.70 K intron_retention plexA,RI_chr4_1036247_1047588,RI_chr4_1040642_1047395,RF_chr4_1044307_1047399 chr4 - chr4_1034395_1034943 chr4_1034394_1034395;chr4_1034943_1034944 chr4_1034259_1034394;chr4_1034944_1035139 8.63 11.76 7.69 6.90 NA 14.29 11.54 6.12 6.67 NA NA 8.57 26.67 0.00 NA 8.06 NA NA 0.00 9.68 NA NA NA NA NA NA 0.00 NA NA NA 8.70 NA NA 5.41 NA NA NA NA NA NA NA 9.68 NA 12.50 NA 10.00 6.67 NA 6.67 13.33 0.00 NA NA 12.50 NA 9.09 12.50 NA K jcn_only_AA CG42574,I_chr3R_618802_618939,I_chr3R_621543_625413,I_chr3R_621546_625413 chr3R - chr3R_621543_622210 chr3R_621546_622210 chr3R_622211_622332;chr3R_621459_621542 58.80 58.33 NA 56.72 75.00 NA 56.82 69.23 55.26 56.00 57.14 70.13 NA 65.22 NA 59.26 54.55 NA NA 57.63 NA 66.10 63.89 64.86 61.36 53.33 62.50 53.09 66.67 50.00 64.00 NA 50.00 66.67 78.79 71.43 61.04 58.33 52.17 48.84 NA 57.89 NA 63.41 NA NA NA 62.86 64.52 NA 53.12 54.55 NA NA 58.06 NA NA NA K intron_retention CG2061,I_chrX_10986657_10986813 chrX + chrX_10986752_10986813 chrX_10986751_10986752;chrX_10986813_10986814 chrX_10986526_10986751;chrX_10986814_10986874 0.00 NA 0.00 18.18 NA NA 4.76 6.67 10.53 NA NA 0.00 NA NA 12.50 8.33 NA 0.00 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA NA 6.25 NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 10.53 NA 0.00 NA K jcn_only_AD CG7177 chr3L - chr3L_21547281_21547665;chr3L_21547281_21547653 chr3L_21547281_21547480 chr3L_21547125_21547280;chr3L_21547666_21547994 9.77 NA NA 10.71 NA 0.00 7.89 13.04 8.16 NA NA 5.13 8.33 NA NA 15.00 NA NA NA 8.82 NA 8.00 22.73 NA NA NA NA NA NA NA 13.64 NA NA 6.06 NA NA 26.09 NA NA 23.81 NA 13.89 NA NA NA NA NA 0.00 12.50 NA 24.00 NA NA NA 4.35 NA NA NA K intron_retention CG8029,I_chr2R_5095165_5095256 chr2R + chr2R_5095850_5095921 chr2R_5095849_5095850;chr2R_5095921_5095922 chr2R_5095588_5095849;chr2R_5095922_5097234 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.22 0.00 0.00 0.00 0.90 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention gish chr3R + chr3R_12098804_12100306 chr3R_12098803_12098804;chr3R_12100306_12100307 chr3R_12098798_12098803;chr3R_12100307_12100597 100.00 100.00 100.00 98.86 97.30 100.00 100.00 99.10 97.97 100.00 100.00 98.98 100.00 98.53 100.00 99.19 100.00 97.62 100.00 99.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 95.65 100.00 99.01 100.00 100.00 97.83 100.00 96.15 100.00 97.96 99.00 98.28 100.00 100.00 100.00 96.55 98.89 99.14 100.00 100.00 100.00 100.00 100.00 98.73 100.00 96.43 98.25 K jcn_only_AD CG9821,I_chr3R_4644986_4645248,I_chr3R_4644986_4645577,I_chr3R_4644986_4645648,I_chr3R_4644986_4646263,RI_chr3R_4644986_4646264,RI_chr3R_4645903_4646033 chr3R - chr3R_4644986_4645248;chr3R_4644986_4645577;chr3R_4644986_4646033 chr3R_4644986_4645649 chr3R_4644886_4644985;chr3R_4646034_4646133 77.17 80.43 74.89 76.72 75.00 75.48 77.17 72.77 76.94 74.34 75.36 78.92 71.47 74.65 78.47 75.05 72.69 80.83 75.68 79.71 80.34 71.43 85.20 88.21 83.69 76.71 80.09 72.13 50.31 68.83 75.07 74.67 64.66 71.91 80.95 79.21 87.58 80.83 84.94 75.63 58.90 77.57 80.40 86.53 60.98 76.42 82.58 62.72 77.33 80.80 78.47 78.15 87.30 84.00 80.89 82.83 81.33 73.53 K intron_retention CG4658,I_chr2L_9958819_9958939 chr2L + chr2L_9958886_9958939 chr2L_9958885_9958886;chr2L_9958939_9958940 chr2L_9957960_9958885;chr2L_9958940_9959039 3.92 2.44 7.89 10.91 5.56 5.88 3.92 3.23 3.77 0.00 2.70 3.77 6.25 8.33 5.88 2.44 4.17 0.00 0.00 2.74 0.00 2.56 10.53 6.52 0.00 7.69 2.50 8.70 0.00 2.56 10.00 0.00 1.64 8.20 0.00 9.09 2.99 4.00 3.85 4.48 4.76 4.82 6.90 0.00 1.59 12.24 0.00 3.77 6.67 2.27 5.88 0.00 0.00 9.52 10.64 6.78 6.00 8.00 K alternative_acceptor Pfrx,I_chrX_19390217_19400515,RI_chrX_19390217_19403850,RI_chrX_19392914_19400518,RI_chrX_19399882_19400518,I_chrX_19400112_19400515,RI_chrX_19400112_19400518,I_chrX_19400271_19400518 chrX + chrX_19400271_19400325;chrX_19400271_19400518 chrX_19400271_19400515 chrX_19400171_19400270;chrX_19400519_19400615 50.00 60.00 40.00 NA NA NA 50.00 33.33 NA 60.00 NA 40.00 NA 60.00 75.00 50.00 40.00 50.00 50.00 58.82 NA NA 75.00 NA NA 50.00 20.00 60.00 NA NA 40.00 NA 66.67 42.86 NA NA NA NA 50.00 NA NA 62.50 NA 33.33 NA NA NA NA 45.45 NA 62.50 NA NA NA 50.00 25.00 50.00 50.00 K alternative_donor Lerp chr3R - chr3R_22669298_22669469 chr3R_22669298_22669376 chr3R_22669167_22669297;chr3R_22669470_22669638 31.25 32.00 13.04 17.65 25.00 20.00 41.18 26.32 22.22 41.18 16.67 25.00 NA 25.00 21.05 31.25 NA NA 20.00 31.71 NA 47.83 37.04 41.38 47.37 35.71 38.10 33.33 36.84 27.27 23.08 25.00 40.00 32.00 20.00 31.82 40.00 33.33 31.82 45.83 40.00 17.86 30.00 47.37 26.67 26.09 36.00 27.78 34.21 28.57 22.86 36.36 40.00 26.09 26.32 27.59 29.17 36.84 K intron_retention CG33936,RI_chr3R_5183458_5183705 chr3R + chr3R_5180577_5180646 chr3R_5180576_5180577;chr3R_5180646_5180647 chr3R_5180144_5180576;chr3R_5180647_5180805 0.00 0.38 0.00 1.13 0.59 0.86 0.55 0.58 0.25 1.31 0.00 0.00 0.00 0.46 1.60 0.73 0.65 0.00 0.00 0.47 0.00 0.00 0.63 0.00 0.00 0.00 0.96 2.87 0.96 0.00 0.00 0.00 0.66 0.00 0.00 0.39 0.00 0.00 0.00 0.46 0.00 0.25 0.66 0.64 0.00 0.00 0.00 0.63 0.26 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention trol,I_chrX_2387249_2389980,I_chrX_2391522_2395659 chrX - chrX_2370063_2374766 chrX_2370062_2370063;chrX_2374766_2374767 chrX_2369857_2370062;chrX_2374767_2374941 11.63 8.05 15.79 12.50 15.00 14.00 42.86 16.25 11.48 15.38 20.00 26.21 8.33 11.63 8.47 19.35 15.38 15.38 17.39 5.35 24.14 5.06 9.42 4.63 10.53 15.15 8.93 25.00 5.13 8.33 21.05 5.56 5.65 13.13 8.33 6.85 7.00 2.99 6.98 4.10 4.88 12.61 23.81 4.12 5.15 12.50 4.92 5.47 17.53 14.04 11.94 7.32 15.09 0.00 12.31 9.23 23.94 11.86 K intron_retention CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4991437_4991560 chr2L_4991436_4991437;chr2L_4991560_4991561 chr2L_4991385_4991436;chr2L_4991561_4992436 55.77 NA NA 63.64 NA NA 63.64 63.64 61.54 NA NA NA 72.73 NA NA NA 80.00 NA NA 50.00 NA 36.36 NA NA NA NA 47.37 68.75 NA NA NA NA NA 47.06 NA 41.18 NA NA NA 47.06 NA 73.33 NA 27.27 NA 43.75 NA NA 63.64 NA 36.36 NA NA NA NA NA NA NA K jcn_only_AD Df31,RE_chr2L_21628206_21629662,I_chr2L_21628206_21629666,I_chr2L_21628210_21628515,I_chr2L_21628210_21628944,I_chr2L_21628210_21629216,EI_chr2L_21628210_21629715,REI_chr2L_21628210_21629884,I_chr2L_21628224_21629666,I_chr2L_21628734_21629666 chr2L - chr2L_21628210_21629216;chr2L_21628210_21628515;chr2L_21628210_21628944;chr2L_21628210_21629715;chr2L_21628210_21629884 chr2L_21628210_21629666 chr2L_21628124_21628209;chr2L_21629885_21629918 99.50 99.58 99.59 99.40 99.19 99.39 99.60 99.50 99.64 99.67 99.52 99.06 99.32 99.57 99.68 99.66 99.63 99.44 99.62 99.54 99.68 97.81 99.85 99.36 100.00 99.12 99.11 98.96 98.01 99.37 99.55 98.91 98.39 99.53 99.78 99.81 99.36 99.64 99.38 97.92 98.59 99.40 99.26 99.30 99.18 99.57 99.43 98.80 99.53 99.59 99.78 99.63 99.55 99.67 99.07 99.38 99.68 99.44 K jcn_only_AD I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10065344,I_chr2R_10064197_10068715,I_chr2R_10067437_10068984,I_chr2R_10068194_10068715 chr2R + chr2R_10068325_10068715;chr2R_10067437_10068715 chr2R_10064197_10068715 chr2R_10068716_10068805 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD TMS1 chr3L + chr3L_16405981_16406347 chr3L_16406009_16406347 chr3L_16406348_16406903;chr3L_16405851_16405980 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention AP-47,I_chr3R_5385123_5385196,CG9393 chr3R - chr3R_5387724_5387896 chr3R_5387723_5387724;chr3R_5387896_5387897 chr3R_5387302_5387723;chr3R_5387897_5388292 0.00 0.00 0.00 8.93 0.00 4.76 4.62 0.00 2.60 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 2.86 0.00 1.23 6.25 0.00 1.37 0.00 0.00 2.13 2.27 0.00 3.85 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 2.04 4.84 3.57 1.82 0.00 1.64 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 3.17 K alternative_acceptor I_chr3R_23771063_23772599,CG4951,RI_chr3R_23778808_23778861 chr3R - chr3R_23778799_23778865 chr3R_23778808_23778865 chr3R_23778866_23778961;chr3R_23778715_23778798 94.44 96.97 96.43 92.86 84.00 90.32 87.50 91.67 87.23 90.48 96.15 94.00 100.00 86.96 91.18 95.83 95.24 95.83 96.15 94.92 100.00 92.86 90.48 95.35 93.75 95.65 94.74 94.44 96.77 97.50 92.31 92.31 94.20 97.62 96.15 100.00 89.13 96.67 94.34 88.89 95.56 94.55 95.45 95.24 89.66 90.62 94.44 95.65 91.11 93.18 94.29 95.00 92.68 85.71 93.55 94.59 96.67 94.74 K alternative_donor CG1970,I_chr4_590803_590943,I_chr4_590970_591026,I_chr4_590970_591030 chr4 - chr4_590970_591034;chr4_590970_591030 chr4_590970_591026 chr4_590944_590969;chr4_591035_591043 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.37 0.00 0.60 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 1.08 0.79 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.61 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 N alternative_acceptor stc chr2L + chr2L_15114214_15114448;chr2L_15114214_15114311 chr2L_15114214_15114299 chr2L_15114049_15114213;chr2L_15114449_15115753 95.92 96.92 92.19 95.96 95.92 95.83 92.93 94.68 94.66 95.65 96.08 96.08 96.49 94.92 88.73 97.73 100.00 96.43 96.36 95.95 89.13 96.06 93.18 97.87 98.39 93.10 97.56 94.17 96.04 95.54 91.94 96.10 79.89 93.75 93.59 96.59 97.06 97.18 97.98 96.00 95.56 92.24 95.83 95.80 96.47 93.22 97.01 96.09 94.44 94.20 96.21 88.24 100.00 95.92 90.91 96.77 87.69 96.10 K jcn_only_AA vap,RI_chrX_15897976_15899352,I_chrX_15897976_15899654,I_chrX_15898011_15899654,I_chrX_15898427_15899017,RI_chrX_15898427_15899654,RI_chrX_15899237_15899352,I_chrX_15899237_15899654 chrX - chrX_15897976_15899654;chrX_15898011_15899654;chrX_15899510_15899654;chrX_15898478_15899654 chrX_15898427_15899654 chrX_15899655_15899705 1.35 NA NA NA NA NA 0.00 NA 5.56 NA NA 6.06 NA NA NA 2.94 NA NA NA 0.00 NA 0.00 3.70 NA 0.00 NA NA NA NA 0.00 0.00 NA NA 0.00 NA NA 5.00 NA 0.00 3.23 NA 2.70 NA 4.35 NA NA NA NA 2.86 NA NA 0.00 NA NA NA NA NA NA N multi_cassette CG17528,I_chr2R_705620_705713,I_chr2R_705649_705720,RI_chr2R_706735_711409,I_chr2R_706735_711443,I_chr2R_707374_711443 chr2R - chr2R_705440_711615 chr2R_705440_705502;chr2R_705649_705713;chr2R_706735_706792;chr2R_707442_711615 chr2R_705503_705648;chr2R_705714_706734;chr2R_706793_707441 chr2R_705290_705439;chr2R_711616_711627 100.00 100.00 100.00 50.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG5080,I_chr2L_1162147_1163759,I_chr2L_1163280_1163759,I_chr2L_1163629_1163759,I_chr2L_1163632_1163759 chr2L - chr2L_1162147_1163759 chr2L_1163150_1163759 chr2L_1163760_1163859 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Chd1,I_chr2L_2986815_2987511 chr2L - chr2L_2985414_2985475 chr2L_2985413_2985414;chr2L_2985475_2985476 chr2L_2985240_2985413;chr2L_2985476_2985585 0.00 0.00 0.00 10.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RI_chr3R_5165997_5180143,CG33936,I_chr3R_5167726_5180143,R_chr3R_5168211_5180143,RI_chr3R_5168214_5168297,I_chr3R_5168617_5180143,snoRNA:Me18S-G1358a,RI_chr3R_5183458_5183705 chr3R + chr3R_5167726_5180143 chr3R_5168214_5180143 chr3R_5180144_5180232;chr3R_5167626_5167725 99.35 98.99 99.16 99.31 100.00 99.09 99.59 100.00 99.33 100.00 100.00 100.00 99.38 99.35 99.31 99.53 99.12 100.00 99.31 99.50 98.86 98.39 99.29 100.00 100.00 100.00 99.18 99.04 100.00 100.00 98.00 100.00 98.44 99.58 98.73 100.00 97.89 98.85 98.55 99.53 97.92 99.15 99.24 99.31 100.00 100.00 100.00 100.00 99.61 98.98 99.26 100.00 100.00 98.31 99.38 98.78 98.90 100.00 K intron_retention Nup358,I_chr3R_21078958_21079044,CG11857,CG11858,CG11859 chr3R + chr3R_21085705_21085773 chr3R_21085704_21085705;chr3R_21085773_21085774 chr3R_21085216_21085704;chr3R_21085774_21086488 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13162874_13163860 chrX_13162873_13162874;chrX_13163860_13163861 chrX_13162727_13162873;chrX_13163861_13163991 3.23 1.48 3.25 1.49 0.93 2.92 3.43 3.64 3.30 8.97 7.14 3.63 14.29 5.08 4.74 1.37 1.53 3.28 2.92 5.51 3.92 2.01 4.42 4.03 8.26 2.72 5.49 4.60 2.55 2.83 4.08 2.70 3.69 2.82 2.82 4.52 3.05 4.65 1.99 2.94 5.50 3.47 5.08 3.82 3.17 0.86 1.10 3.35 2.80 2.21 3.23 1.96 2.22 4.00 1.73 2.06 0.00 0.00 K intron_retention Cyp4e2,Cyp4e1 chr2R + chr2R_4334052_4334111 chr2R_4334051_4334052;chr2R_4334111_4334112 chr2R_4333877_4334051;chr2R_4334112_4334667 0.00 0.00 0.00 3.12 3.85 0.00 2.99 0.00 2.78 0.00 0.00 3.28 0.00 0.00 0.00 1.61 2.78 0.00 1.82 1.12 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 3.33 1.23 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ptp99A,I_chr3R_25302126_25302175 chr3R + chr3R_25309466_25310173 chr3R_25309465_25309466;chr3R_25310173_25310174 chr3R_25309191_25309465;chr3R_25310174_25310193 100.00 100.00 95.00 100.00 100.00 94.12 100.00 87.10 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 97.87 96.30 100.00 95.83 100.00 100.00 97.78 92.86 93.75 97.22 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 97.50 100.00 100.00 95.83 100.00 96.77 94.44 100.00 K intron_retention CG8839,I_chr2R_8229288_8231538 chr2R - chr2R_8228646_8228714 chr2R_8228645_8228646;chr2R_8228714_8228715 chr2R_8228071_8228645;chr2R_8228715_8228934 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 1.67 0.29 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.20 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG7609,I_chr3R_25574492_25574541 chr3R - chr3R_25568326_25568388 chr3R_25568325_25568326;chr3R_25568388_25568389 chr3R_25567772_25568325;chr3R_25568389_25568574 0.00 0.00 0.00 2.67 0.00 0.00 0.00 3.23 1.04 0.00 0.00 1.02 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG10353,I_chrX_11775936_11778830,RI_chrX_11780885_11780988 chrX - chrX_11779315_11780988;chrX_11780885_11780988 chrX_11779138_11780988 chrX_11780989_11781085;chrX_11778831_11779137 20.00 0.00 50.00 0.00 NA NA 50.00 0.00 25.00 0.00 50.00 0.00 NA NA 50.00 25.00 NA 0.00 0.00 58.33 NA 33.33 0.00 50.00 50.00 NA NA 0.00 50.00 50.00 0.00 0.00 33.33 0.00 NA 0.00 0.00 NA 50.00 0.00 0.00 0.00 50.00 0.00 50.00 50.00 50.00 25.00 20.00 0.00 50.00 50.00 NA NA 0.00 0.00 50.00 0.00 K jcn_only_AD Cdk4,RI_chr2R_12471503_12471656 chr2R + chr2R_12467202_12468346;chr2R_12467432_12468346;chr2R_12467241_12468346;chr2R_12467275_12468346;chr2R_12467474_12468346;chr2R_12467225_12468346;chr2R_12467261_12468346;chr2R_12467039_12468346 chr2R_12467227_12468346 chr2R_12468347_12468520;chr2R_12467030_12467038 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 3.33 NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 3.23 K intron_retention ferrochelatase chr3R - chr3R_27637201_27637462 chr3R_27637200_27637201;chr3R_27637462_27637463 chr3R_27637099_27637200;chr3R_27637463_27637841 2.66 2.33 0.71 2.29 0.00 1.80 2.88 1.85 2.73 4.76 2.11 3.17 6.19 3.03 1.45 1.32 0.00 2.78 0.86 3.57 2.04 3.05 3.76 3.47 2.91 0.66 5.51 4.37 4.09 2.66 2.99 1.48 2.89 1.06 4.41 2.48 3.98 1.95 2.73 4.26 1.36 2.40 2.47 1.00 3.24 2.79 2.67 2.06 2.79 2.40 4.04 3.73 2.44 2.08 1.45 3.19 1.64 1.43 K alternative_donor Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21124522_21125346 chr2L_21124615_21125346 chr2L_21125347_21125439;chr2L_21124443_21124521 2.78 0.00 2.33 16.28 3.85 0.00 2.78 5.26 4.92 3.85 6.25 2.70 6.67 3.45 0.00 1.72 3.57 0.00 3.03 1.59 2.38 9.68 2.44 2.78 3.85 7.14 6.25 8.33 0.00 4.00 2.70 NA 0.00 1.72 3.85 7.41 2.44 3.45 2.38 4.65 NA 1.72 3.45 8.33 6.25 3.33 0.00 0.00 3.37 4.35 2.44 0.00 0.00 NA 0.00 0.00 0.00 0.00 K alternative_donor sar1,I_chr3R_18184656_18185246,I_chr3R_18185015_18185246,I_chr3R_18185148_18185246 chr3R + chr3R_18184656_18185246;chr3R_18185148_18185246;chr3R_18185015_18185246 chr3R_18184351_18185246 chr3R_18185247_18185346;chr3R_18184285_18184350 99.56 100.00 99.37 99.48 100.00 100.00 99.14 99.48 99.40 100.00 98.41 99.56 99.56 99.53 99.09 99.32 100.00 100.00 99.26 99.03 99.15 98.76 99.40 99.45 98.85 99.56 99.01 97.04 97.85 99.61 99.66 100.00 100.00 100.00 99.63 99.63 99.67 99.31 99.54 99.27 99.64 99.39 100.00 99.12 99.68 99.77 99.39 99.50 99.56 99.65 99.72 98.89 100.00 99.70 100.00 99.68 100.00 100.00 K alternative_donor CG1347 chr3R + chr3R_1495452_1499211;chr3R_1496295_1499211 chr3R_1495515_1499211 chr3R_1499212_1502282;chr3R_1495435_1495451 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG16718,E_chr3R_15462172_15464824,I_chr3R_15463336_15463401,RI_chr3R_15464150_15464400,EI_chr3R_15465136_15466705 chr3R - chr3R_15463336_15463401 chr3R_15463341_15463401 chr3R_15463402_15463501;chr3R_15463236_15463335 94.74 83.33 94.12 100.00 93.33 92.86 95.83 96.43 100.00 88.89 100.00 100.00 90.91 93.75 100.00 96.43 93.75 100.00 94.74 96.55 100.00 100.00 93.75 92.31 90.91 100.00 93.33 100.00 100.00 93.33 88.89 90.00 100.00 92.59 100.00 92.86 94.12 NA 100.00 96.00 92.86 97.37 94.12 94.12 90.91 95.00 100.00 93.94 93.94 NA 92.31 100.00 100.00 NA 94.44 100.00 NA 95.24 K jcn_only_AD Eph,I_chr4_631523_634240,I_chr4_631555_631910,I_chr4_631643_631910,I_chr4_639690_640473,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_631643_631910;chr4_631523_631910 chr4_631555_631910 chr4_631911_632010;chr4_631455_631522 0.00 NA 0.00 0.00 NA 0.00 0.00 2.27 0.00 NA NA 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 3.85 NA NA 0.00 0.00 NA NA 3.70 NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA 0.00 NA 0.00 3.85 NA NA NA NA 3.70 1.79 NA 4.00 NA NA NA 0.00 NA NA NA K intron_retention CG9399,I_chr3R_5403032_5403329 chr3R - chr3R_5398477_5398970 chr3R_5398476_5398477;chr3R_5398970_5398971 chr3R_5397895_5398476;chr3R_5398971_5399011 0.00 5.71 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 5.41 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 5.00 0.00 NA 3.85 0.00 3.57 0.00 0.00 0.00 0.00 0.00 3.45 NA K alternative_donor l(2)k05819,I_chr2L_4396173_4396266 chr2L + chr2L_4396128_4396809;chr2L_4396173_4396809 chr2L_4396407_4396809 chr2L_4396810_4396906;chr2L_4396073_4396127 1.69 1.64 2.70 1.96 1.39 1.59 1.89 2.02 1.69 0.00 0.00 2.21 11.11 1.72 1.47 1.98 3.03 1.67 3.23 1.79 0.00 5.66 1.16 1.43 1.69 1.64 2.25 0.00 0.00 0.00 2.90 0.00 0.00 1.83 0.00 4.44 1.42 1.43 0.00 2.27 0.00 2.07 1.85 2.04 3.45 2.50 2.27 0.00 1.75 3.03 2.70 1.89 0.00 0.00 1.16 2.63 0.00 0.00 K jcn_only_AA HLH106,RI_chr3L_19787260_19787323 chr3L + chr3L_19787260_19787323;chr3L_19787260_19787773;chr3L_19787260_19787998 chr3L_19787260_19787663 chr3L_19787254_19787259 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 K jcn_only_AD CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25318474_25319136;chr3R_25318474_25319163;chr3R_25318474_25319142;chr3R_25318474_25319093;chr3R_25318474_25318971;chr3R_25318474_25319004;chr3R_25318474_25319167 chr3R_25318474_25318925 chr3R_25318374_25318473;chr3R_25319168_25319224 0.34 0.00 0.36 1.54 1.56 0.84 0.00 0.38 0.40 0.51 0.00 0.40 0.00 0.49 0.00 0.43 0.49 0.00 0.00 0.45 0.00 0.00 1.10 0.20 0.34 0.42 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.55 0.00 0.59 0.18 0.77 0.32 0.45 1.03 0.73 0.26 0.00 0.00 0.00 0.00 0.00 0.38 0.34 0.27 0.34 0.60 0.76 0.60 K alternative_donor CG5484 chr3R + chr3R_22543722_22544049;chr3R_22543749_22544049 chr3R_22543734_22544049 chr3R_22544050_22544588;chr3R_22543570_22543721 2.27 2.20 3.08 1.01 1.49 3.39 1.03 0.87 1.27 2.08 1.10 5.41 0.00 3.77 1.14 5.19 1.45 0.00 1.56 1.41 1.72 7.46 2.80 2.22 3.51 5.08 5.17 3.85 3.17 1.69 7.14 0.00 2.22 2.00 2.13 3.51 2.68 2.27 2.63 4.55 3.57 1.47 3.28 3.49 5.17 3.70 3.57 1.72 3.51 4.35 5.62 1.43 2.94 2.22 4.48 2.17 1.14 1.75 K alternative_donor CG11489,I_chr3L_22273037_22275661 chr3L + chr3L_22276250_22276302;chr3L_22276245_22276302 chr3L_22276239_22276302 chr3L_22276303_22276572;chr3L_22276004_22276238 12.50 0.00 40.00 12.50 NA NA 10.00 6.25 NA NA NA 16.67 NA NA 11.11 12.50 16.67 20.00 NA 7.69 NA 23.08 NA NA NA 16.67 NA NA NA 20.00 12.50 NA 8.33 NA NA NA NA NA NA 40.00 NA 22.22 20.00 11.11 0.00 20.00 28.57 11.11 0.00 NA 30.77 NA NA 37.50 NA 12.50 11.11 9.09 K jcn_only_AD Moe,I_chrX_8774434_8791759 chrX - chrX_8768435_8768544 chrX_8768435_8768535 chrX_8768222_8768434;chrX_8768545_8768932 32.98 35.34 32.83 29.62 31.76 33.48 34.78 22.11 33.37 31.12 26.22 30.48 35.67 32.22 27.68 29.48 29.50 25.15 23.91 32.12 28.31 38.50 34.01 35.83 35.05 30.87 33.38 33.74 35.09 32.67 27.97 33.09 32.98 34.50 33.62 23.23 31.35 31.80 34.05 36.59 35.04 34.70 31.67 34.29 33.02 31.30 34.99 33.33 31.20 33.22 36.28 30.29 36.04 34.23 30.95 32.55 34.12 32.95 K alternative_donor Lam chr2L + chr2L_5543273_5543324;chr2L_5542864_5543324;chr2L_5542661_5543324 chr2L_5542656_5543324 chr2L_5543325_5543794;chr2L_5542527_5542655 0.00 2.86 0.00 2.08 0.00 0.00 0.00 2.08 0.00 1.92 0.00 0.00 3.57 0.00 4.35 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 2.33 0.00 0.00 4.17 1.69 2.22 2.27 0.00 0.00 2.22 0.78 0.00 1.18 3.03 1.72 1.59 0.00 0.00 0.83 1.18 0.00 1.85 0.00 2.50 3.12 2.70 0.00 3.85 1.45 K intron_retention Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8463480_8463539 chr3L_8463479_8463480;chr3L_8463539_8463540 chr3L_8463385_8463479;chr3L_8463540_8463583 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA 25.00 0.00 0.00 NA 0.00 0.00 NA NA NA NA K intron_retention Socs16D chrX - chrX_17716922_17716991 chrX_17716921_17716922;chrX_17716991_17716992 chrX_17716831_17716921;chrX_17716992_17717160 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention Fmr1,I_chr3R_5930712_5930781,I_chr3R_5934794_5935245,I_chr3R_5934801_5935537 chr3R - chr3R_5930712_5930790 chr3R_5930711_5930712;chr3R_5930790_5930791 chr3R_5930612_5930711;chr3R_5930791_5930881 94.37 96.55 93.75 93.55 92.31 96.77 100.00 98.15 96.55 83.33 91.67 88.14 93.10 96.30 91.89 94.29 85.19 95.00 97.06 97.30 96.67 100.00 93.18 87.50 91.18 90.00 94.74 87.50 90.00 91.11 91.11 94.12 98.04 95.74 92.59 92.50 97.50 92.00 96.77 95.59 100.00 94.29 96.00 97.06 96.67 90.24 91.89 93.33 93.55 96.15 97.62 94.44 100.00 94.44 95.00 NA 90.48 97.14 N intron_retention Pvr,I_chr2L_8226604_8228082,I_chr2L_8229001_8230124,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8226607_8226858 chr2L_8226606_8226607;chr2L_8226858_8226859 chr2L_8226458_8226606 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 72.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 K jcn_only_AA Imp,RI_chrX_10699665_10700695 chrX - chrX_10692578_10692651 chrX_10692599_10692651 chrX_10692652_10693026;chrX_10691869_10692577 13.62 15.29 16.24 14.59 7.84 12.90 16.56 13.43 16.36 15.94 10.17 12.22 17.14 17.14 11.20 13.61 10.81 13.64 18.26 14.61 6.98 17.14 11.27 7.37 19.12 22.68 10.45 8.97 13.73 14.47 10.81 16.00 11.11 10.81 8.93 19.05 9.42 15.71 12.90 20.75 36.36 9.60 11.83 14.29 20.00 8.33 12.77 19.23 16.18 7.41 8.26 12.50 14.29 NA 10.85 11.43 16.67 17.39 K jcn_only_AA Dyrk3,I_chr4_1231226_1233305,I_chr4_1233845_1234170 chr4 - chr4_1230568_1230624 chr4_1230573_1230624 chr4_1230625_1231068;chr4_1230231_1230567 95.96 91.18 95.35 98.81 97.06 100.00 95.77 94.92 91.95 NA 97.50 100.00 92.50 96.67 97.06 100.00 91.67 91.43 95.45 95.65 95.65 100.00 96.30 96.88 100.00 88.89 100.00 100.00 96.77 100.00 93.75 100.00 92.31 95.12 100.00 96.15 93.10 NA 89.66 96.49 91.30 94.37 100.00 97.22 96.97 90.00 95.12 100.00 95.18 100.00 90.32 97.06 95.65 95.24 91.53 NA 97.30 91.18 K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27761114_27762991,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27707594_27801169 chr3R_27707594_27747354;chr3R_27747397_27784756;chr3R_27784850_27795477;chr3R_27795508_27798223;chr3R_27798276_27801169 chr3R_27747355_27747396;chr3R_27784757_27784849;chr3R_27795478_27795507;chr3R_27798224_27798275 chr3R_27707494_27707593;chr3R_27801170_27801219 87.50 NA NA NA 100.00 NA 100.00 100.00 NA NA NA 66.67 75.00 NA 100.00 NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 60.00 NA NA NA NA NA 75.00 NA NA NA K jcn_only_AA CG42533,F_chr2L_7476906_7476978 chr2L - chr2L_7480324_7480560 chr2L_7480327_7480560 chr2L_7480561_7480896;chr2L_7478851_7480323 83.80 91.67 86.49 83.87 NA 71.43 74.51 85.00 88.31 82.61 NA 90.32 82.86 85.71 92.11 93.62 93.10 82.50 91.18 82.76 75.86 83.72 88.46 77.78 93.33 78.57 79.55 92.00 76.19 87.10 76.19 NA 81.58 80.36 86.49 93.75 81.82 95.83 90.00 86.21 NA 87.32 93.10 80.00 NA 80.00 NA 82.93 75.90 72.73 90.70 81.25 NA NA 76.00 NA NA NA K intron_retention CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4987090_4987158 chr2L_4987089_4987090;chr2L_4987158_4987159 chr2L_4986017_4987089;chr2L_4987159_4987240 10.81 6.38 10.87 3.77 10.34 2.56 7.25 7.25 8.55 8.33 18.60 9.30 17.50 11.76 12.07 14.81 4.65 10.87 16.67 6.74 9.30 10.87 9.72 13.21 16.33 7.14 9.62 19.23 16.28 14.29 16.90 25.00 8.33 6.85 17.24 14.29 9.09 6.12 12.50 13.85 9.52 7.00 11.36 5.36 9.52 10.81 11.11 18.18 5.56 4.88 11.29 14.29 7.41 8.00 11.54 13.51 11.63 0.00 K intron_retention Mob4 chr2R - chr2R_2583028_2583137 chr2R_2583027_2583028;chr2R_2583137_2583138 chr2R_2582619_2583027;chr2R_2583138_2583336 99.12 100.00 99.11 99.47 100.00 100.00 99.37 99.44 99.18 98.48 98.75 98.39 98.96 100.00 99.29 99.29 100.00 100.00 99.12 99.52 100.00 94.44 99.25 96.75 100.00 99.13 98.57 95.38 98.91 98.95 100.00 98.11 98.03 100.00 97.89 98.95 99.11 99.02 99.28 98.72 99.34 99.54 98.75 97.94 99.25 98.30 98.57 98.08 99.48 98.45 98.40 100.00 99.11 100.00 99.30 97.92 99.51 98.30 K intron_retention pnt,I_chr3R_19118404_19119566,I_chr3R_19139278_19163617,I_chr3R_19181524_19181702 chr3R - chr3R_19118404_19119566 chr3R_19118403_19118404;chr3R_19119566_19119567 chr3R_19118304_19118403;chr3R_19119567_19119666 19.64 NA NA NA NA NA NA NA 29.41 NA NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA 41.67 NA NA NA NA NA 0.00 NA 11.76 NA NA NA NA 30.77 NA NA 25.00 K alternative_donor cype chr2L + chr2L_5327287_5327502 chr2L_5327351_5327502 chr2L_5327503_5327676;chr2L_5327227_5327286 2.90 2.45 2.83 2.63 1.03 2.07 3.21 2.65 2.52 3.57 2.56 1.53 2.44 2.03 1.52 2.47 2.12 3.20 2.33 1.72 2.25 6.25 2.90 3.92 2.17 1.42 10.53 8.33 9.52 7.41 1.29 3.81 8.16 1.20 10.71 13.04 3.09 1.03 4.32 2.91 9.09 1.42 2.20 8.06 2.18 5.63 6.98 4.62 1.73 7.14 5.88 3.19 2.50 6.82 1.56 6.38 5.91 5.49 K alternative_acceptor Mi-2,Su(Tpl) chr3L - chr3L_19890509_19902346 chr3L_19890514_19902346 chr3L_19902347_19902410;chr3L_19890418_19890508 47.37 43.75 61.54 52.17 43.75 NA 58.33 51.52 52.08 NA NA 54.17 57.89 61.11 63.64 45.95 50.00 40.00 43.48 51.02 NA 35.00 29.03 66.67 50.00 63.64 43.48 41.18 NA 23.08 50.00 NA NA 39.47 43.75 46.67 33.33 NA 41.67 47.37 NA 53.33 41.67 41.67 NA NA NA 75.00 48.57 NA 42.31 NA NA NA 33.33 NA 85.71 NA K alternative_acceptor CG4877 chr3L + chr3L_16379595_16379731;chr3L_16379595_16379725 chr3L_16379595_16379772 chr3L_16379486_16379594;chr3L_16379773_16380052 0.00 NA NA 12.50 NA NA 0.00 12.50 7.14 NA NA 8.33 NA NA NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA NA 20.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA 16.67 NA 0.00 NA NA NA K alternative_donor CaMKI,I_chr4_467862_471815,I_chr4_471136_473243,I_chr4_472116_472527,I_chr4_473338_473410,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_472081_473243 chr4_472116_473243 chr4_473244_473337;chr4_472016_472080 18.35 20.00 22.22 12.90 NA NA 29.63 16.33 24.32 NA NA 16.67 35.71 23.53 10.53 21.05 29.41 14.29 15.62 22.73 18.18 7.69 20.00 5.88 NA 45.45 19.35 NA NA NA 17.14 NA NA 17.65 21.05 14.29 NA 8.33 0.00 16.67 5.56 18.92 22.73 23.08 NA 13.04 18.18 17.24 12.00 26.67 16.67 25.00 NA 18.18 20.00 22.22 23.53 18.52 K intron_retention CG3271,CG9422,I_chr2R_2584435_2585553 chr2R + chr2R_2561323_2561378 chr2R_2561322_2561323;chr2R_2561378_2561379 chr2R_2561146_2561322;chr2R_2561379_2561695 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Rho1,I_chr2R_11990455_11992537,RI_chr2R_11991687_11992537 chr2R + chr2R_11990362_11991115;chr2R_11990326_11991115;chr2R_11990398_11991115 chr2R_11990814_11991115 chr2R_11991116_11991279;chr2R_11990232_11990325 42.34 42.34 36.59 38.04 36.00 44.07 31.46 26.06 35.51 36.73 38.17 37.32 27.18 47.95 42.50 32.55 43.28 45.00 30.73 34.01 40.19 58.70 39.09 46.32 49.21 42.86 43.08 35.44 43.48 74.51 44.38 38.46 51.06 36.65 32.53 47.37 43.04 43.75 33.33 55.56 46.38 34.60 23.64 48.00 64.00 53.61 26.55 52.38 35.74 43.16 43.12 36.89 42.47 50.00 31.65 32.08 36.26 59.81 K intron_retention CG10277,I_chr3R_2211939_2212057 chr3R + chr3R_2211921_2212057 chr3R_2211920_2211921;chr3R_2212057_2212058 chr3R_2211839_2211920;chr3R_2212058_2212157 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 2.73 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Galpha49B,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500390_8501648;chr2R_8500390_8501759 chr2R_8500390_8501071 chr2R_8500380_8500389;chr2R_8501760_8501850 89.16 NA NA NA NA NA NA NA NA NA NA 93.33 NA NA NA 96.15 NA NA NA NA NA NA 85.00 NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RecQ5 chr3L - chr3L_14621505_14621562 chr3L_14621504_14621505;chr3L_14621562_14621563 chr3L_14621260_14621504;chr3L_14621563_14622781 9.09 4.76 0.00 10.00 NA 10.53 13.73 11.59 8.47 NA 0.00 12.00 8.33 5.71 9.68 23.08 9.09 0.00 16.22 0.00 9.09 NA 25.00 3.85 12.50 17.39 8.00 0.00 NA NA 0.00 NA NA 10.91 14.29 NA NA NA NA 8.33 NA 8.20 12.12 17.65 21.43 20.00 7.69 NA 12.70 3.03 10.53 0.00 0.00 NA 12.50 3.85 7.41 6.67 K intron_retention Hrb27C,I_chr2L_6924401_6924743 chr2L + chr2L_6920862_6922637 chr2L_6920861_6920862;chr2L_6922637_6922638 chr2L_6920793_6920861;chr2L_6922638_6922826 1.64 NA NA NA NA NA 3.28 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA N cassette chinmo chr2L + chr2L_1690756_1694546 chr2L_1690756_1694223;chr2L_1694442_1694546 chr2L_1694224_1694441 chr2L_1690117_1690755;chr2L_1694547_1695376 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG31337 chr3R - chr3R_9370100_9370267 chr3R_9370099_9370100;chr3R_9370267_9370268 chr3R_9369679_9370099;chr3R_9370268_9370428 0.76 1.49 0.61 3.95 0.00 0.00 1.54 1.71 0.89 0.00 0.00 1.74 0.00 2.96 1.38 0.00 0.75 2.19 0.00 2.34 0.00 0.00 0.76 0.00 3.33 1.12 0.83 2.38 4.29 0.00 2.03 0.00 0.00 0.87 1.30 0.00 0.00 0.00 2.20 1.90 0.00 1.81 0.00 0.00 0.00 1.82 0.80 0.00 1.17 0.00 0.92 0.00 1.24 0.00 0.91 0.00 0.85 0.00 K alternative_donor CaMKI,I_chr4_466377_467256,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,RI_chr4_467374_467424,RI_chr4_467482_467543,I_chr4_467862_471815,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_466592_467726;chr4_466377_467726;chr4_467662_467726;chr4_466798_467726;chr4_467273_467726 chr4_466275_467726 chr4_467727_467826;chr4_466269_466274 0.00 33.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 N intron_retention He,I_chr2L_13975880_13975977 chr2L - chr2L_13972612_13972675 chr2L_13972611_13972612;chr2L_13972675_13972676 chr2L_13972094_13972611;chr2L_13972676_13972964 15.97 NA NA NA NA NA NA 14.29 17.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Rrp1 chr2L - chr2L_2970905_2970985 chr2L_2970904_2970905;chr2L_2970985_2970986 chr2L_2970714_2970904;chr2L_2970986_2971054 6.60 3.95 10.42 18.75 0.00 5.36 11.90 4.40 6.72 5.00 7.55 7.87 4.88 5.00 6.45 6.94 8.33 7.55 7.14 5.37 6.82 4.76 7.69 4.71 22.22 16.00 16.33 8.00 21.74 0.00 11.54 8.16 4.71 11.69 8.33 25.71 0.00 1.67 4.65 6.03 22.22 6.72 11.63 3.12 4.44 8.42 4.48 6.60 7.30 6.15 0.00 2.08 0.00 0.00 3.12 4.55 4.48 10.26 K jcn_only_AD RPA2,RI_chr2L_20925851_20925909 chr2L - chr2L_20925851_20925913 chr2L_20925851_20925909 chr2L_20925751_20925850;chr2L_20925914_20925975 0.75 1.63 0.84 0.32 0.00 1.62 0.00 0.32 0.60 1.54 0.57 0.56 0.00 0.00 0.41 0.00 1.63 0.52 1.03 1.00 0.49 0.00 1.77 0.75 0.00 0.00 1.82 0.43 2.00 2.69 3.14 1.92 1.15 0.64 1.60 0.68 1.59 2.36 1.78 0.00 0.00 0.26 0.00 1.28 0.49 0.96 1.20 1.74 0.56 1.05 2.46 1.18 1.52 1.61 0.44 1.29 0.32 0.74 K intron_retention JTBR chr3L - chr3L_1802754_1802803 chr3L_1802753_1802754;chr3L_1802803_1802804 chr3L_1802008_1802753;chr3L_1802804_1802835 71.43 80.00 72.73 64.10 68.75 75.00 65.71 63.33 68.00 83.33 52.63 69.70 69.23 64.71 71.43 81.08 47.37 71.43 64.29 87.80 77.78 66.67 83.33 100.00 NA 88.24 92.31 75.00 71.88 66.67 70.37 36.67 60.00 61.11 NA 90.00 96.55 87.50 93.33 50.00 71.43 71.43 64.29 56.25 55.17 55.17 NA 69.57 71.43 83.33 80.00 88.89 NA NA 73.08 90.00 81.82 40.48 K intron_retention Pfk,I_chr2R_5999081_6000140,E_chr2R_6001157_6001630 chr2R + chr2R_6003263_6003319 chr2R_6003262_6003263;chr2R_6003319_6003320 chr2R_6002820_6003262;chr2R_6003320_6004162 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor Dscam,I_chr2R_3212243_3212342,F_chr2R_3219886_3228832,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3208270_3209087 chr2R_3208884_3209087 chr2R_3209088_3209151;chr2R_3207156_3208269 12.50 6.67 11.76 9.43 10.00 13.33 29.41 11.76 14.29 NA NA 14.29 26.67 12.50 8.70 15.00 9.09 5.56 10.53 19.05 7.69 39.13 12.50 6.67 22.22 6.67 18.75 14.29 14.29 18.18 9.52 16.67 13.33 12.90 18.18 25.00 4.76 NA 14.29 15.00 11.11 8.33 20.00 10.53 12.50 16.67 5.56 30.77 9.52 4.76 9.09 7.69 NA NA 9.09 5.88 6.25 14.29 K cassette CG3764 chr3L - chr3L_16993113_16995321 chr3L_16993113_16994615;chr3L_16994848_16995321 chr3L_16994616_16994847 chr3L_16992863_16993112;chr3L_16995322_16995358 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RpS5a,I_chrX_17037805_17039048,I_chrX_17037805_17040830,I_chrX_17038786_17039048,snoRNA:Psi28S-2876 chrX - chrX_17038750_17039048 chrX_17038749_17038750;chrX_17039048_17039049 chrX_17038686_17038749;chrX_17039049_17039148 0.02 0.01 0.03 0.06 0.00 0.00 0.01 0.05 0.03 0.00 0.01 0.01 0.00 0.06 0.02 0.02 0.00 0.03 0.04 0.03 0.00 0.06 0.03 0.03 0.01 0.00 0.04 0.07 0.04 0.00 0.00 0.00 0.02 0.02 0.03 0.00 0.03 0.00 0.01 0.02 0.00 0.03 0.00 0.01 0.00 0.02 0.01 0.00 0.06 0.01 0.02 0.04 0.02 0.00 0.01 0.01 0.02 0.05 K intron_retention Utx chr2L - chr2L_10274091_10274164 chr2L_10274090_10274091;chr2L_10274164_10274165 chr2L_10273966_10274090;chr2L_10274165_10274868 12.00 7.69 NA 21.05 NA NA 0.00 13.64 16.00 NA NA NA NA 15.38 14.29 10.53 NA NA 14.29 12.00 NA NA 0.00 13.33 NA 0.00 30.77 NA NA NA 15.38 NA NA 11.11 NA NA NA NA 0.00 NA NA 11.54 NA NA NA NA NA NA 11.76 0.00 NA NA NA NA 12.50 NA NA NA K cassette Cda5 chr2L - chr2L_29069_33844;chr2L_29069_34557 chr2L_29069_30393;chr2L_33271_34557,chr2L_33271_33844 chr2L_30394_33270 chr2L_29024_29068;chr2L_34558_34596 25.00 NA NA NA NA NA NA NA 20.00 NA NA 100.00 NA NA NA NA NA 0.00 NA NA NA 33.33 NA NA NA 16.67 NA NA NA NA 25.00 NA NA 25.00 NA NA NA NA NA 33.33 NA 20.00 NA 20.00 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA K intron_retention CG8315,I_chr2R_11887476_11888411 chr2R - chr2R_11879553_11879605 chr2R_11879552_11879553;chr2R_11879605_11879606 chr2R_11878884_11879552;chr2R_11879606_11879891 3.12 7.14 0.00 4.55 0.00 0.00 6.78 2.78 3.12 5.88 0.00 0.00 0.00 5.26 2.78 4.17 5.26 2.17 2.17 4.88 0.00 NA 8.57 0.00 0.00 0.00 1.92 0.00 7.41 15.38 15.38 8.00 0.00 10.64 7.41 0.00 0.00 5.00 8.51 0.00 4.76 6.02 5.41 6.25 0.00 0.00 0.00 3.12 6.25 3.45 2.38 3.70 0.00 0.00 11.90 11.11 0.00 4.17 K alternative_acceptor CG6673,CG6662 chr3L - chr3L_8515419_8516500 chr3L_8516322_8516500 chr3L_8516501_8516593;chr3L_8514832_8515418 97.69 97.99 99.32 96.09 98.29 98.47 92.52 95.67 97.46 96.25 98.18 98.25 100.00 98.33 98.17 100.00 97.22 99.15 97.69 97.22 98.17 96.00 96.34 97.52 88.00 94.40 96.69 100.00 99.10 97.17 96.95 99.22 100.00 96.94 98.10 96.51 99.33 96.85 97.53 97.14 94.35 96.85 100.00 94.23 99.41 98.51 99.48 98.58 97.79 98.26 97.04 97.32 98.35 97.63 97.56 98.85 97.65 98.33 K alternative_acceptor Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3295244 chr2R_3294591_3295244 chr2R_3295245_3295302;chr2R_3294491_3294565 35.71 36.36 25.00 53.33 NA NA 22.22 38.10 28.21 NA 20.00 32.00 NA 33.33 33.33 45.45 41.67 50.00 27.27 25.71 35.71 90.00 42.11 42.11 33.33 46.15 50.00 40.00 50.00 35.71 27.27 26.67 30.43 22.22 62.50 62.50 29.41 46.15 47.37 40.00 66.67 33.33 NA 41.18 NA 30.77 NA 47.37 24.14 30.77 45.45 25.00 23.08 NA 20.00 36.36 NA 23.81 K intron_retention Hel89B chr3R + chr3R_11808233_11808301 chr3R_11808232_11808233;chr3R_11808301_11808302 chr3R_11806191_11808232;chr3R_11808302_11808542 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor mthl3 chr2R - chr2R_13338538_13338593;chr2R_13338538_13340067;chr2R_13338538_13340031;chr2R_13338538_13340007 chr2R_13338538_13339957 chr2R_13338407_13338537;chr2R_13340068_13340078 83.33 77.78 87.50 76.19 100.00 81.82 76.00 79.31 83.78 50.00 76.92 81.82 92.86 78.57 66.67 81.82 92.31 83.33 78.57 91.67 100.00 100.00 71.43 85.71 75.00 50.00 100.00 NA 50.00 75.00 82.35 NA 66.67 84.00 71.43 66.67 100.00 100.00 NA 62.50 100.00 83.33 84.62 83.33 NA 85.71 100.00 60.00 91.67 100.00 85.71 85.71 NA NA 80.00 100.00 85.71 85.71 K alternative_donor CG34039 chr3L + chr3L_14553189_14554958 chr3L_14553919_14554958 chr3L_14554959_14555099;chr3L_14553171_14553188 25.00 20.00 16.67 5.88 11.11 22.22 12.50 6.90 10.71 40.00 NA 19.05 20.00 13.33 20.00 9.09 16.67 22.22 6.67 15.38 12.50 NA 30.00 50.00 42.86 8.33 20.00 50.00 75.00 66.67 31.25 50.00 66.67 11.11 22.22 33.33 55.56 66.67 41.67 43.75 80.00 13.64 9.09 25.00 44.44 46.15 27.27 66.67 15.79 18.18 50.00 30.00 50.00 30.77 12.50 36.36 26.32 66.67 K intron_retention vib,RI_chr3R_15051793_15052186 chr3R - chr3R_15044769_15044910 chr3R_15044768_15044769;chr3R_15044910_15044911 chr3R_15044691_15044768;chr3R_15044911_15045062 1.67 0.00 0.93 1.73 0.00 0.00 2.05 1.16 2.41 0.00 1.09 1.88 3.70 1.06 0.00 1.95 1.82 4.71 2.88 1.71 0.00 2.22 1.97 1.28 3.95 0.88 4.67 1.67 0.00 0.00 2.11 0.00 6.78 2.53 4.11 2.82 1.22 0.00 0.00 3.85 4.08 1.12 2.67 0.00 0.00 2.97 0.70 7.55 1.92 1.63 1.17 0.00 1.41 0.00 2.67 1.80 0.49 3.77 K intron_retention retm,I_chr2L_6451015_6451364,I_chr2L_6459995_6460559,I_chr2L_6464140_6465326 chr2L - chr2L_6451737_6451796 chr2L_6451736_6451737;chr2L_6451796_6451797 chr2L_6451618_6451736;chr2L_6451797_6452055 0.00 0.00 0.00 10.00 0.00 3.33 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 7.69 NA 35.29 6.25 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD I_chr2R_9844856_9845327,CG13349,RI_chr2R_9846641_9846709 chr2R - chr2R_9847615_9847752;chr2R_9847615_9847732 chr2R_9847615_9847823 chr2R_9847073_9847614;chr2R_9847824_9847834 0.56 0.00 0.00 0.00 0.00 0.00 0.56 0.93 0.00 4.35 0.00 0.49 0.00 0.00 2.13 0.56 0.81 0.99 0.00 1.18 0.76 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.76 1.68 3.80 3.92 0.52 0.00 2.90 0.00 1.03 0.00 9.21 2.86 2.41 0.86 3.64 2.38 3.57 0.00 2.86 0.82 0.00 0.00 1.41 1.43 1.11 1.42 0.00 0.00 15.15 K jcn_only_AD RpL32,I_chr3R_25871509_25871807 chr3R - chr3R_25871509_25871851;chr3R_25871509_25871771;chr3R_25871509_25871611;chr3R_25871509_25871855 chr3R_25871509_25871583 chr3R_25871409_25871508;chr3R_25871856_25871862 1.90 1.80 0.60 0.40 0.54 0.23 1.29 0.58 0.83 5.12 0.47 0.57 0.61 0.58 0.61 1.90 0.61 1.50 0.48 0.40 0.68 6.38 7.24 5.35 3.81 0.74 6.07 4.41 9.26 6.47 1.44 2.36 2.75 0.69 3.99 5.38 2.96 4.71 4.70 2.48 4.22 0.44 0.69 3.64 2.05 4.42 2.01 3.65 0.75 4.22 10.08 3.23 0.97 7.50 0.48 5.28 1.42 1.00 K jcn_only_AD fwd,RI_chr3L_319514_319746 chr3L - chr3L_314318_319746 chr3L_314318_318990 chr3L_313024_314317;chr3L_319747_319846 52.12 45.45 68.97 52.17 45.00 NA 58.70 61.19 49.28 33.33 45.45 60.00 53.12 52.94 41.67 32.26 48.39 42.31 42.50 58.33 50.00 55.56 53.16 60.00 56.67 85.29 53.19 NA 53.85 33.33 30.95 NA 34.78 51.47 46.34 68.89 51.22 45.95 57.69 58.06 NA 52.63 70.37 50.88 NA NA 38.10 67.50 48.65 NA 57.41 46.15 71.43 NA 52.08 NA NA NA K alternative_donor CG1354,I_chrX_9672972_9673084,I_chrX_9673026_9673084 chrX + chrX_9673026_9673084;chrX_9672947_9673084;chrX_9672967_9673084 chrX_9672972_9673084 chrX_9673085_9673184;chrX_9672926_9672946 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17399683_17403481;chr2R_17399683_17401733;chr2R_17399683_17401713 chr2R_17399683_17403392 chr2R_17399598_17399682;chr2R_17403482_17403550 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG3348,RI_chr3R_23117734_23117847 chr3R - chr3R_23117716_23117847 chr3R_23117734_23117847 chr3R_23117848_23117947;chr3R_23117634_23117715 2.05 3.45 2.44 0.89 0.00 0.00 1.82 4.71 2.13 0.00 1.18 2.05 1.75 0.00 0.00 1.49 0.00 1.72 2.50 0.00 1.19 0.00 NA 23.08 NA 3.03 NA 26.32 6.67 NA 1.25 3.39 3.12 1.90 NA NA NA NA NA 8.33 2.70 0.81 3.57 NA 1.54 9.38 25.00 2.86 2.15 10.53 NA NA 5.56 NA 0.00 NA 8.33 0.00 K jcn_only_AA spn-F chr3R + chr3R_27081692_27081759 chr3R_27081692_27081756 chr3R_27080864_27081691;chr3R_27081760_27082388 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 2.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 2.44 2.33 0.00 0.00 0.00 0.00 K intron_retention CG12582 chr3R + chr3R_29885_29987 chr3R_29884_29885;chr3R_29987_29988 chr3R_29816_29884;chr3R_29988_30053 81.82 85.51 86.00 85.40 80.95 75.93 82.61 79.66 81.02 83.47 78.26 78.24 85.26 81.73 85.07 82.47 80.95 82.24 83.33 83.20 79.63 81.34 83.27 78.50 82.35 75.00 89.02 93.08 79.37 79.35 84.55 81.53 76.52 78.53 80.53 55.93 82.04 80.92 82.26 80.81 82.55 79.67 76.47 85.31 83.47 82.58 81.64 82.09 83.82 81.33 82.35 76.29 85.37 83.55 78.29 81.82 83.57 81.52 K alternative_donor pes chr2L - chr2L_7991620_7993840;chr2L_7991620_7994109 chr2L_7991620_7994134 chr2L_7991358_7991619;chr2L_7994135_7994182 0.00 1.02 0.76 0.49 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.66 0.00 0.00 0.78 0.00 0.32 0.00 0.81 0.00 0.75 0.00 0.82 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.42 0.92 0.00 0.00 0.00 1.14 0.00 0.00 1.32 0.73 0.00 0.00 0.00 0.65 1.11 0.00 0.00 K jcn_only_AA how chr3R + chr3R_17897764_17900173 chr3R_17897764_17900170 chr3R_17897461_17897763;chr3R_17900174_17900666 48.15 52.50 63.04 50.98 32.35 64.10 45.65 52.73 42.31 44.74 44.44 43.62 NA 55.56 55.26 57.50 50.00 35.00 30.77 55.06 48.15 47.37 46.23 40.48 51.16 54.76 43.37 42.62 67.50 59.02 47.54 48.00 48.15 46.15 56.92 43.37 57.00 59.02 37.93 50.00 62.50 50.59 53.49 47.12 50.00 54.76 32.14 57.41 65.22 37.04 53.85 47.83 47.06 52.08 43.75 40.00 48.00 48.15 K jcn_only_AA CG3419 chr2R + chr2R_20301935_20302017;chr2R_20301935_20301990 chr2R_20301935_20301994 chr2R_20299701_20301934;chr2R_20302018_20302306 8.33 NA NA NA NA NA NA 8.33 8.00 NA NA 13.04 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Tsp42Ed chr2R - chr2R_2898099_2898167 chr2R_2898098_2898099;chr2R_2898167_2898168 chr2R_2897937_2898098;chr2R_2898168_2898359 12.41 12.80 11.15 13.22 9.18 12.57 11.55 12.41 14.59 17.16 11.39 11.90 13.60 10.17 12.69 9.39 11.81 12.06 8.42 10.89 10.75 7.66 11.71 12.93 14.01 17.54 10.57 8.18 16.94 13.77 23.98 16.74 21.71 12.32 11.69 13.74 14.89 13.28 15.17 14.89 12.24 11.02 12.41 10.50 17.63 15.49 14.96 17.55 11.38 9.69 17.17 14.02 11.11 13.55 11.65 13.78 9.02 11.30 K jcn_only_AD TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748981_19749882;chr2R_19748981_19749899;chr2R_19748981_19750012 chr2R_19748981_19749783 chr2R_19748884_19748980;chr2R_19750013_19750013 78.87 89.19 81.25 82.76 70.00 73.33 82.00 73.68 85.71 NA 86.96 78.67 85.19 78.95 70.73 67.27 76.47 75.00 80.77 73.61 87.88 75.00 86.67 76.67 73.08 80.00 86.49 NA 55.00 80.95 60.87 60.00 57.14 80.39 NA 86.96 93.33 80.77 72.34 77.78 72.00 78.57 73.91 85.29 NA 77.78 63.64 85.29 83.05 78.79 83.67 77.14 NA 93.75 82.86 73.53 85.71 82.05 K intron_retention eIF-4E,I_chr3L_9394468_9395446,I_chr3L_9394819_9395198,I_chr3L_9394819_9395379 chr3L - chr3L_9393134_9393196 chr3L_9393133_9393134;chr3L_9393196_9393197 chr3L_9392748_9393133;chr3L_9393197_9393284 0.00 0.00 0.00 0.54 0.00 0.00 0.26 0.44 0.76 0.00 0.70 0.32 0.00 0.00 0.28 0.79 0.00 0.00 0.71 0.47 0.00 0.00 0.18 0.22 0.00 0.00 0.69 0.27 0.29 0.00 0.00 0.00 0.00 0.42 0.37 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 K alternative_donor CoRest,I_chrX_19416977_19417035 chrX + chrX_19416603_19417035;chrX_19416977_19417035;chrX_19416431_19417035;chrX_19416669_19417035 chrX_19416423_19417035 chrX_19417036_19417135;chrX_19416201_19416422 56.67 57.81 36.11 55.77 50.00 51.22 52.63 53.85 48.15 52.94 50.00 57.50 64.71 61.76 60.00 53.19 45.83 57.14 58.33 51.55 51.52 48.53 60.44 62.03 65.91 54.72 56.25 61.54 61.22 56.00 46.51 63.41 49.09 56.67 60.00 61.54 63.55 65.17 60.71 59.80 60.87 56.18 50.00 64.00 60.42 56.86 63.46 58.62 48.15 53.06 65.96 61.36 47.37 62.50 47.17 54.55 46.34 50.00 K intron_retention CG9646 chr2R + chr2R_12938670_12940773 chr2R_12938669_12938670;chr2R_12940773_12940774 chr2R_12938230_12938669;chr2R_12940774_12940923 13.64 14.29 NA 0.00 NA NA 15.79 NA 12.50 NA NA NA NA NA NA 28.57 NA NA NA 20.00 NA 16.67 0.00 12.50 NA NA 17.65 28.57 25.00 17.65 14.29 13.79 17.65 21.43 NA 7.69 5.26 6.67 10.00 18.42 9.38 13.64 NA 10.53 10.71 11.54 NA 15.38 22.22 10.71 11.11 NA NA NA NA 12.50 NA 0.00 K intron_retention MB8.chr3R.pasa.66,I_chr3R_3314337_3319450,DMG8-chr3R.6.013,alpha-Est9,CG1287 chr3R - chr3R_3323088_3330235 chr3R_3323087_3323088;chr3R_3330235_3330236 chr3R_3322775_3323087;chr3R_3330236_3330808 0.00 0.00 0.00 NA NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA 6.25 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA N jcn_only_AA Dscam,I_chr2R_3212243_3212342,F_chr2R_3219886_3228832,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3208270_3209087 chr2R_3208884_3209087 chr2R_3209088_3209151;chr2R_3207156_3208269 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 35.48 NA 0.00 NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 NA K intron_retention mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818607_7818970 chr3R_7818606_7818607;chr3R_7818970_7818971 chr3R_7818507_7818606;chr3R_7818971_7818995 85.00 68.42 68.42 76.00 73.33 92.31 85.00 86.67 89.66 83.33 96.30 82.00 87.88 78.57 84.85 87.88 87.10 80.00 74.07 97.92 78.95 NA 88.24 82.35 100.00 69.23 96.43 85.71 91.67 76.92 85.00 100.00 90.91 90.24 92.31 91.67 80.00 90.00 75.00 79.41 NA 86.36 82.14 84.21 81.82 93.75 100.00 70.00 81.25 82.61 86.96 80.00 NA NA 87.10 88.24 81.82 92.86 K jcn_only_AD eIF-2beta,RI_chr3L_12519486_12519541 chr3L - chr3L_12519486_12519688;chr3L_12519486_12519541;chr3L_12519486_12519590 chr3L_12519486_12519596 chr3L_12519386_12519485;chr3L_12519689_12519829 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.24 0.34 0.27 0.00 0.28 0.00 0.00 0.28 0.00 0.00 K intron_retention Pez chr2L - chr2L_6337272_6338057 chr2L_6337271_6337272;chr2L_6338057_6338058 chr2L_6335315_6337271;chr2L_6338058_6338406 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA 9.09 3.85 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA NA NA NA NA K jcn_only_AD CG8188,I_chrX_17595810_17596205,I_chrX_17595810_17596592 chrX - chrX_17595810_17596233 chrX_17595810_17596205 chrX_17595710_17595809;chrX_17596234_17596305 0.56 0.60 0.00 0.42 1.60 0.00 0.46 1.41 0.57 2.15 0.70 2.11 2.56 0.00 0.00 0.00 1.64 1.21 1.52 0.65 1.73 0.65 0.00 0.56 0.00 1.58 0.00 1.94 4.49 1.86 0.96 0.77 0.39 1.63 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.94 1.65 0.77 1.89 0.00 0.00 1.49 1.07 0.00 0.00 0.00 0.00 0.00 1.21 0.00 0.00 0.46 K multi_cassette Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24348983_24351592 chr3R_24348983_24349755;chr3R_24349940_24349995;chr3R_24351030_24351138;chr3R_24351310_24351592 chr3R_24349756_24349939;chr3R_24349996_24351029;chr3R_24351139_24351309 chr3R_24348417_24348982;chr3R_24351593_24351772 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 88.89 92.86 100.00 96.97 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA TMS1 chr3L + chr3L_16407594_16407920;chr3L_16407594_16407905;chr3L_16407594_16407893;chr3L_16407594_16407902 chr3L_16407594_16407914 chr3L_16407384_16407593;chr3L_16407921_16408056 16.56 20.39 14.55 24.81 16.92 15.20 27.80 12.57 14.72 22.25 16.08 19.90 16.63 15.07 15.96 11.06 11.70 16.90 14.46 17.08 15.92 14.64 20.03 16.89 17.88 8.37 20.37 9.34 17.16 14.16 18.90 17.51 14.15 15.01 16.99 15.62 20.61 16.17 19.95 16.56 14.88 15.86 14.08 18.38 13.79 15.69 16.64 16.09 17.59 20.55 17.82 12.97 21.96 19.53 15.70 17.79 16.48 20.43 K intron_retention CG32512 chrX - chrX_20935071_20937626 chrX_20935070_20935071;chrX_20937626_20937627 chrX_20934829_20935070;chrX_20937627_20938494 3.28 0.00 4.44 0.00 0.00 0.00 8.33 2.33 3.95 3.03 0.00 3.33 10.53 6.45 0.00 13.64 0.00 0.00 5.41 3.28 0.00 8.08 2.38 3.12 0.00 5.41 5.00 4.65 2.22 1.64 4.88 9.09 4.00 8.82 0.00 9.43 2.70 2.50 3.81 3.53 4.17 4.35 7.41 0.00 1.82 4.65 0.00 0.00 3.95 2.82 5.63 0.00 0.00 0.00 4.17 4.17 6.67 0.00 K intron_retention RpL14 chr3L + chr3L_8594238_8594413 chr3L_8594237_8594238;chr3L_8594413_8594414 chr3L_8594108_8594237;chr3L_8594414_8594515 38.46 NA NA NA NA NA NA NA 64.29 NA NA 38.46 NA NA NA NA NA NA NA 40.00 NA 46.15 31.82 20.00 60.00 NA 39.13 50.00 69.57 NA 26.83 36.36 58.33 NA NA 61.11 23.08 NA 30.77 41.67 50.00 NA NA 25.00 30.00 55.56 29.41 66.67 45.45 20.00 38.46 NA 38.46 25.00 NA 26.09 37.50 63.33 K cassette Mef2,I_chr2R_5806354_5806933,CREFI_chr2R_5809509_5845628,I_chr2R_5814375_5816404,RI_chr2R_5846889_5846948 chr2R - chr2R_5806354_5806933;chr2R_5806354_5806951 chr2R_5806354_5806468;chr2R_5806568_5806933,chr2R_5806568_5806951 chr2R_5806469_5806567 chr2R_5806254_5806353;chr2R_5806952_5807033 17.65 NA NA 14.29 NA NA NA 21.43 20.00 NA 6.67 17.65 16.67 NA 18.18 NA NA NA NA 15.00 NA 55.56 26.09 16.67 NA NA 17.65 NA 6.67 NA NA NA 20.00 NA NA NA 29.41 30.77 30.77 8.70 NA 15.79 NA 21.43 14.29 18.18 20.00 8.33 17.65 14.29 27.78 NA 17.65 NA NA 17.65 16.67 20.00 K intron_retention egh,mit(1)15 chrX + chrX_2483540_2489758 chrX_2483539_2483540;chrX_2489758_2489759 chrX_2482474_2483539;chrX_2489759_2491048 12.00 NA 4.76 30.77 14.29 11.11 13.89 20.00 11.63 NA 5.56 24.14 11.76 13.33 24.24 18.18 14.29 25.93 13.79 21.05 18.75 4.76 7.41 7.41 6.67 18.52 15.00 21.05 15.79 13.64 14.29 NA 7.41 18.42 10.53 12.00 4.76 0.00 0.00 6.25 0.00 13.73 8.33 0.00 NA 13.79 10.53 5.26 13.46 NA 3.33 7.69 NA NA 20.00 0.00 NA 0.00 K jcn_only_AA Hrb27C,I_chr2L_6924401_6924743 chr2L + chr2L_6921441_6922734 chr2L_6921441_6922730 chr2L_6921423_6921440;chr2L_6922735_6922826 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA 88.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 92.00 NA NA NA NA NA NA NA NA NA K intron_retention CG11009 chr3L + chr3L_12843898_12844014 chr3L_12843897_12843898;chr3L_12844014_12844015 chr3L_12843598_12843897;chr3L_12844015_12844253 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention B52,F_chr3R_9488762_9491174,E_chr3R_9488770_9491174,RI_chr3R_9489655_9489713 chr3R + chr3R_9488774_9489733 chr3R_9488773_9488774;chr3R_9489733_9489734 chr3R_9488692_9488773;chr3R_9489734_9489796 78.95 88.89 80.00 NA 60.00 NA 61.11 100.00 84.62 61.11 88.89 84.00 66.67 84.62 75.00 94.12 92.31 87.50 86.67 74.07 NA 88.89 76.67 80.00 71.43 50.00 80.00 NA 23.53 87.50 22.64 90.91 87.50 78.95 91.67 NA 78.95 69.23 84.21 76.19 60.00 90.91 NA 70.00 66.67 75.00 NA 66.67 90.32 70.00 77.78 70.00 61.54 66.67 92.86 NA 70.00 80.00 K intron_retention Mmp1,I_chr2R_20564123_20565214,I_chr2R_20569965_20572193 chr2R - chr2R_20563649_20563718 chr2R_20563648_20563649;chr2R_20563718_20563719 chr2R_20562733_20563648;chr2R_20563719_20564122 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG2926,I_chr3R_1410841_1410893 chr3R - chr3R_1411608_1411661 chr3R_1411607_1411608;chr3R_1411661_1411662 chr3R_1410894_1411607;chr3R_1411662_1413173 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.00 96.25 100.00 100.00 98.61 100.00 100.00 97.50 97.87 100.00 100.00 97.78 98.44 100.00 98.21 98.59 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.63 97.30 100.00 98.53 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 98.46 94.44 97.78 96.88 100.00 100.00 98.08 95.24 100.00 100.00 K alternative_acceptor nvy,I_chr2R_20177146_20177208 chr2R + chr2R_20177146_20177208 chr2R_20177146_20177203 chr2R_20177046_20177145;chr2R_20177209_20177308 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 NA 100.00 87.50 NA 100.00 NA NA NA 90.00 100.00 NA 97.73 100.00 100.00 100.00 NA 100.00 96.15 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 95.24 100.00 92.31 NA 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 NA 100.00 92.31 NA 100.00 95.83 92.31 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2392054;chrX_2392149_2392515;chrX_2392665_2393243;chrX_2393712_2394269;chrX_2394396_2395151;chrX_2395275_2395659 chrX_2392055_2392148;chrX_2392516_2392664;chrX_2393244_2393711;chrX_2394270_2394395;chrX_2395152_2395274 chrX_2387149_2387248;chrX_2395660_2395759 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AA CG6729,I_chr2L_10742536_10742692,I_chr2L_10743767_10743821,E_chr2L_10745700_10745781,I_chr2L_10753685_10755903 chr2L - chr2L_10743767_10743821 chr2L_10743771_10743821 chr2L_10743822_10743872;chr2L_10743667_10743766 100.00 97.87 100.00 97.96 100.00 100.00 97.62 100.00 100.00 95.24 100.00 96.97 100.00 95.83 94.12 95.65 100.00 97.06 100.00 100.00 95.83 98.28 98.72 98.25 100.00 100.00 100.00 98.44 92.59 100.00 82.14 100.00 100.00 100.00 95.83 100.00 98.04 100.00 97.14 100.00 NA 100.00 90.48 100.00 NA NA 97.56 NA 100.00 94.87 94.64 96.30 100.00 100.00 100.00 97.44 100.00 NA K alternative_donor Tsp66E chr3L + chr3L_8905697_8906068;chr3L_8905846_8906068 chr3L_8905872_8906068 chr3L_8906069_8906085;chr3L_8905674_8905696 20.00 NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention sbr,RI_chrX_10731248_10731484 chrX - chrX_10728205_10728261 chrX_10728204_10728205;chrX_10728261_10728262 chrX_10727708_10728204;chrX_10728262_10728433 0.00 0.00 0.00 1.00 0.00 0.00 1.92 1.75 0.81 0.00 5.26 1.64 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 2.00 5.38 0.00 0.00 0.00 1.80 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 K jcn_only_AA CG17082,R_chr2R_642176_644740,RI_chr2R_644671_645068,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_644671_645068 chr2R_644671_644740 chr2R_644571_644670;chr2R_645069_645168 98.77 100.00 97.14 98.51 NA 94.74 97.85 100.00 98.77 NA 95.24 100.00 100.00 98.08 100.00 97.65 100.00 NA 96.30 97.78 NA NA 100.00 100.00 95.83 85.19 96.30 NA NA 100.00 100.00 100.00 94.29 98.21 100.00 100.00 NA NA NA 100.00 NA 90.91 100.00 100.00 96.55 94.29 NA 95.83 98.85 100.00 97.30 100.00 NA NA 94.87 100.00 90.62 100.00 K intron_retention RI_chr3L_19994894_19994949,CG7668,RI_chr3L_19995983_19996407 chr3L + chr3L_19996093_19996407 chr3L_19996092_19996093;chr3L_19996407_19996408 chr3L_19995858_19996092;chr3L_19996408_19996507 22.50 NA NA 25.00 NA NA 12.50 30.77 19.05 NA NA NA NA 30.77 NA 12.50 NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA 20.00 NA NA 31.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA K intron_retention rgr,I_chr2R_4488735_4489955 chr2R + chr2R_4495761_4495816 chr2R_4495760_4495761;chr2R_4495816_4495817 chr2R_4495662_4495760;chr2R_4495817_4496026 26.32 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 26.32 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor musashi,C_chr3R_21387506_21389801 chr3R + chr3R_21341963_21344982 chr3R_21342072_21344982 chr3R_21344983_21345451;chr3R_21341861_21341962 92.59 93.33 94.74 94.44 87.50 90.91 96.97 94.59 90.00 NA 92.86 90.00 89.47 88.46 100.00 88.00 93.75 87.50 95.83 90.91 93.33 100.00 88.00 90.48 85.71 88.89 100.00 NA 91.67 93.33 92.00 88.89 92.86 94.74 95.83 93.33 100.00 88.89 92.31 84.62 69.23 96.55 94.74 93.33 NA 92.86 91.67 93.33 86.54 80.00 95.24 93.33 85.71 100.00 87.50 92.86 91.67 90.00 K intron_retention CG1233 chr3L + chr3L_362342_362426 chr3L_362341_362342;chr3L_362426_362427 chr3L_361753_362341;chr3L_362427_364903 0.00 0.00 6.45 10.42 0.00 0.00 5.56 0.00 2.67 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.76 0.00 0.00 0.00 0.00 14.63 NA 0.00 0.00 4.65 0.00 3.12 2.86 0.00 0.00 0.00 6.45 8.70 3.57 0.00 3.03 0.00 0.00 0.00 0.00 0.00 5.56 3.17 0.00 3.03 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG5859 chr2R + chr2R_12738150_12738217 chr2R_12738149_12738150;chr2R_12738217_12738218 chr2R_12737998_12738149;chr2R_12738218_12738637 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 NA 8.70 0.00 0.00 0.00 5.26 0.00 0.00 30.00 0.00 NA NA 6.90 0.00 0.00 4.17 0.00 0.00 0.00 7.14 NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA K intron_retention Ect4,I_chr3L_8075556_8086158,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8097919_8097979 chr3L_8097918_8097919;chr3L_8097979_8097980 chr3L_8095993_8097918;chr3L_8097980_8098159 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.61 3.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Msp-300,I_chr2L_5197634_5197866 chr2L + chr2L_5203743_5204450 chr2L_5203742_5203743;chr2L_5204450_5204451 chr2L_5203116_5203742;chr2L_5204451_5204592 0.00 2.86 2.08 5.88 0.00 1.15 0.00 1.94 3.09 0.00 3.85 0.00 2.17 0.00 0.00 1.11 0.00 3.08 1.82 1.96 7.69 0.00 0.00 2.11 0.00 0.00 2.70 0.00 0.00 0.00 3.70 0.00 0.00 1.57 3.08 5.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 2.44 1.74 1.39 2.15 0.00 3.17 0.00 2.68 0.00 0.00 0.00 K intron_retention EI_chr3R_4647896_4648190,CG8379 chr3R + chr3R_4650612_4650676 chr3R_4650611_4650612;chr3R_4650676_4650677 chr3R_4650410_4650611;chr3R_4650677_4651130 0.00 0.00 NA 7.41 NA NA 0.00 0.00 2.56 NA NA 11.76 0.00 NA NA 3.70 NA NA NA 0.00 NA 0.00 0.00 3.45 16.67 NA 0.00 8.33 0.00 12.50 NA 6.67 4.55 0.00 0.00 8.33 0.00 8.33 0.00 0.00 9.09 6.25 NA 8.33 NA 0.00 0.00 NA 2.86 0.00 0.00 0.00 10.53 NA NA 0.00 0.00 8.33 K alternative_acceptor CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042888_5042983;chr2L_5042935_5042983 chr2L_5042891_5042983 chr2L_5042984_5043016;chr2L_5042835_5042887 69.44 NA NA 63.64 NA NA 63.64 75.00 78.57 NA NA 52.94 NA NA 62.50 90.00 NA NA 87.50 80.00 NA NA NA NA NA 62.50 NA 77.78 66.67 NA 66.67 87.50 80.00 63.64 NA 75.00 NA NA NA 72.22 50.00 62.50 NA NA NA 90.00 NA 54.55 64.29 NA 77.78 NA NA NA 63.64 NA NA 80.00 N intron_retention BM-40-SPARC,I_chr3R_22696095_22696231,I_chr3R_22696095_22696291,I_chr3R_22696095_22697413 chr3R - chr3R_22696130_22697647 chr3R_22696129_22696130;chr3R_22697647_22697648 chr3R_22697648_22697767 65.69 NA NA 46.34 NA NA 53.66 68.42 37.50 NA NA 100.00 100.00 100.00 100.00 100.00 52.63 100.00 100.00 100.00 100.00 9.09 NA 53.33 36.84 48.72 37.50 NA 42.86 NA 100.00 NA NA 62.96 NA 53.85 NA NA NA NA NA 42.55 100.00 NA NA NA NA NA 70.00 NA NA NA NA NA 100.00 NA 26.67 NA K intron_retention Oscp,I_chr3R_11091413_11092154 chr3R + chr3R_11092093_11092154 chr3R_11092092_11092093;chr3R_11092154_11092155 chr3R_11091649_11092092;chr3R_11092155_11092254 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD ari-1,I_chrX_18026911_18026975 chrX - chrX_18031084_18031650 chrX_18031084_18031608 chrX_18030475_18031083;chrX_18031651_18031714 100.00 NA NA 100.00 NA NA 97.06 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA NA NA 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA 100.00 K intron_retention I_chr2L_19388570_19389922,CG17544 chr2L - chr2L_19393657_19398334 chr2L_19393656_19393657;chr2L_19398334_19398335 chr2L_19393497_19393656;chr2L_19398335_19398345 1.59 0.00 0.00 1.96 0.00 6.67 4.82 6.80 3.43 0.00 2.94 1.43 4.48 1.39 2.19 5.17 2.86 0.00 0.00 2.40 1.89 7.87 1.30 2.44 3.39 0.00 2.04 0.00 2.21 2.11 0.00 2.22 2.16 2.22 1.15 3.19 0.00 0.00 2.90 2.40 0.00 2.84 1.41 2.67 0.00 0.76 0.00 1.58 1.20 0.00 1.15 0.00 0.00 0.00 5.05 1.59 0.00 2.75 K cassette sw chrX - chrX_20104518_20105848 chrX_20104518_20105401;chrX_20105465_20105848 chrX_20105402_20105464 chrX_20104497_20104517;chrX_20105849_20105976 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.56 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2389073;chrX_2389272_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2393243 chrX_2389074_2389271;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664 chrX_2387149_2387248;chrX_2393244_2393291 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor Pten,I_chr2L_10256507_10256803,F_chr2L_10259663_10260253 chr2L - chr2L_10260585_10260729;chr2L_10260585_10260853 chr2L_10260585_10260741 chr2L_10260254_10260584;chr2L_10260854_10260860 51.31 NA 62.50 46.67 NA NA 58.82 31.58 38.89 NA NA 66.67 37.50 50.00 NA 45.00 NA NA 62.50 55.00 NA 50.00 60.00 66.67 50.00 NA NA NA 57.14 30.00 57.14 NA NA 61.11 66.67 42.86 50.00 66.67 40.00 55.56 33.33 53.85 62.50 53.85 NA 28.57 NA 37.50 52.63 NA 66.67 42.86 NA NA 50.00 NA NA 42.86 K alternative_last_exon Msp-300,I_chr2L_5197634_5197866,snoRNA:Psi18S-525k,noncoding_1106 chr2L + chr2L_5202303_5203115 chr2L_5202303_5202764 chr2L_5203116_5203742 chr2L_5202765_5202833 chr2L_5199343_5202302 24.49 35.94 15.57 24.46 20.34 25.00 13.97 20.22 21.43 26.17 10.00 23.08 31.25 22.62 17.19 19.15 33.33 24.49 19.19 20.59 11.68 59.49 33.58 35.95 24.24 14.74 32.89 65.08 17.05 44.53 17.99 27.08 24.29 29.76 32.98 27.36 39.82 42.19 28.92 42.11 10.87 22.44 21.37 52.86 24.07 25.44 29.41 12.82 18.26 48.00 29.17 36.00 24.04 31.25 20.65 32.86 34.71 14.06 K jcn_only_AA CG10353,I_chrX_11775936_11778830,RI_chrX_11780885_11780988 chrX - chrX_11779315_11780988;chrX_11780885_11780988 chrX_11779138_11780988 chrX_11780989_11781085;chrX_11778831_11779137 22.73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Psi,RI_chr2R_12752536_12752596,I_chr2R_12753387_12753659 chr2R - chr2R_12752539_12752596 chr2R_12752538_12752539;chr2R_12752596_12752597 chr2R_12752074_12752538;chr2R_12752597_12752696 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 7.69 NA NA 0.00 NA 0.00 NA NA 3.45 0.00 0.00 5.88 NA NA 0.00 10.53 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 6.67 NA NA 3.03 0.00 5.00 0.00 6.45 NA 0.00 5.88 0.00 0.00 12.50 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention Polycomblike chr2R + chr2R_14024917_14024975 chr2R_14024916_14024917;chr2R_14024975_14024976 chr2R_14022812_14024916;chr2R_14024976_14025148 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9391,I_chr3L_21262462_21262516 chr3L - chr3L_21260636_21260686 chr3L_21260635_21260636;chr3L_21260686_21260687 chr3L_21260615_21260635;chr3L_21260687_21260714 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.57 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.53 1.12 0.00 0.00 0.00 2.06 1.06 1.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.88 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 K intron_retention D1,RI_chr3R_5065631_5065691,I_chr3R_5065631_5065695,I_chr3R_5065631_5065697 chr3R - chr3R_5065631_5065767 chr3R_5065630_5065631;chr3R_5065767_5065768 chr3R_5065531_5065630;chr3R_5065768_5065790 96.67 93.75 98.51 98.96 97.73 98.31 93.94 98.17 96.52 96.88 95.35 97.17 98.53 96.67 98.70 97.33 97.44 100.00 100.00 98.18 94.44 92.59 92.66 97.96 97.78 100.00 98.75 90.62 98.25 91.36 98.31 95.00 93.08 95.45 96.10 98.33 90.57 96.43 94.29 95.17 96.88 99.15 94.44 98.39 88.89 96.80 94.74 96.06 98.41 96.43 96.43 100.00 98.61 93.83 95.12 90.70 94.74 95.33 K jcn_only_AA sll chr3R + chr3R_13432052_13432106 chr3R_13432052_13432099 chr3R_13431835_13432051;chr3R_13432107_13432287 28.23 26.32 29.41 22.45 NA 34.29 28.21 19.51 26.32 NA 45.45 41.07 37.14 22.73 17.39 25.00 24.00 12.00 20.83 23.68 37.50 37.93 46.97 42.86 15.62 22.73 27.91 30.00 18.52 25.00 19.35 33.33 28.12 36.84 45.16 36.96 26.32 17.14 36.59 26.79 NA 20.41 42.86 35.29 38.46 30.77 43.24 20.00 32.69 28.26 29.17 30.77 20.83 37.93 30.77 31.82 25.71 20.00 K alternative_donor myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_716153_716627;chr4_716153_716613 chr4_716153_716322 chr4_716072_716152;chr4_716628_716661 80.00 75.00 88.89 64.71 NA 75.00 80.00 83.33 84.21 NA 80.00 80.65 63.16 75.00 85.71 81.03 66.67 85.71 66.67 81.25 75.00 NA 75.00 75.00 75.00 71.43 NA NA NA NA 81.82 NA NA 76.47 NA NA NA NA NA 100.00 NA 73.91 76.92 80.00 NA NA 100.00 100.00 89.19 NA 88.89 83.33 NA NA 77.78 NA NA NA K jcn_only_AA CG30007 chr2R + chr2R_5782702_5782762 chr2R_5782702_5782759 chr2R_5782255_5782701;chr2R_5782763_5782990 83.33 NA NA 85.37 NA NA 82.14 75.00 78.57 NA NA 93.55 NA NA NA 84.62 NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA 63.64 NA NA 87.50 NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA 78.57 NA NA NA NA NA NA NA NA NA K intron_retention CG40263,F_chr2RHet_1265687_1293040,F_chr2RHet_1298459_1298703,F_chr2RHet_1298459_1311408,F_chr2RHet_1298885_1299622,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1265687_1286305 chr2RHet_1265686_1265687;chr2RHet_1286305_1286306 chr2RHet_1265587_1265686;chr2RHet_1286306_1286468 20.87 NA NA NA NA NA 41.67 17.65 21.74 NA NA NA NA NA NA 25.00 NA NA NA 7.41 NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_last_exon Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21121236_21121581 chr2L_21121236_21121332 chr2L_21121582_21121769 chr2L_21121333_21121543 chr2L_21121110_21121235 1.69 2.27 0.00 1.43 0.00 2.94 1.47 1.56 1.28 3.23 2.94 0.00 0.00 0.00 0.00 1.85 0.00 3.12 0.00 1.14 0.00 7.25 0.00 3.57 4.76 2.86 1.64 2.63 2.56 1.92 2.44 0.00 1.39 0.00 2.22 1.69 1.64 2.22 1.75 1.52 2.94 1.09 3.03 1.61 3.57 2.13 0.00 2.63 1.28 3.70 1.67 3.03 0.00 4.76 1.96 0.00 3.33 1.96 K intron_retention CG10083 chr3L - chr3L_13478128_13478188 chr3L_13478127_13478128;chr3L_13478188_13478189 chr3L_13477951_13478127;chr3L_13478189_13478640 0.00 2.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG9485,I_chr2R_17217595_17218598,I_chr2R_17228865_17228924 chr2R + chr2R_17200289_17201928;chr2R_17200086_17201928 chr2R_17200246_17201928 chr2R_17201929_17202269;chr2R_17200084_17200085 35.00 NA NA NA NA NA NA NA 35.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CREF_chr3R_5589662_5589762,CG8500 chr3R + chr3R_5611800_5611856 chr3R_5611799_5611800;chr3R_5611856_5611857 chr3R_5611474_5611799;chr3R_5611857_5612042 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 NA NA 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 5.56 0.00 8.33 NA 15.00 0.00 0.00 NA 0.00 0.00 NA 6.67 0.00 0.00 0.00 2.44 NA 0.00 0.00 0.00 NA 10.00 0.00 0.00 2.44 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 K jcn_only_AD Asx chr2R + chr2R_10397969_10398509 chr2R_10398000_10398509 chr2R_10398510_10399220;chr2R_10397728_10397968 3.26 1.10 3.45 6.15 5.08 3.70 0.00 5.41 2.48 3.92 13.79 3.97 5.00 8.89 0.00 0.00 0.00 6.98 5.13 2.42 7.32 0.00 3.38 2.34 4.63 3.45 1.80 4.55 14.08 1.33 0.00 0.00 5.41 3.75 0.00 1.20 0.50 2.91 1.07 2.44 0.00 3.36 6.67 1.35 2.33 3.23 3.26 1.89 1.79 6.17 1.85 7.55 8.47 3.70 6.12 3.30 1.47 3.12 K jcn_only_AA Psi,RI_chr2R_12752536_12752596,I_chr2R_12753387_12753659 chr2R - chr2R_12752539_12752596;chr2R_12752542_12752596 chr2R_12752536_12752596 chr2R_12752597_12752696;chr2R_12752436_12752535 1.67 0.00 5.13 1.64 0.00 0.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 7.69 0.00 3.03 0.00 0.00 0.00 3.51 2.78 5.56 2.50 10.00 NA 2.44 2.50 0.00 2.33 1.43 0.00 0.00 2.17 1.69 NA 2.38 3.28 0.00 0.00 2.22 2.94 4.60 6.90 3.33 0.00 0.00 2.94 0.00 1.52 0.00 3.23 NA 9.09 0.00 3.85 3.12 0.00 1.82 N intron_retention CG11357,I_chr3L_4542781_4542858,C_chr3L_4563905_4578759 chr3L + chr3L_4542908_4552104 chr3L_4542907_4542908;chr3L_4552104_4552105 chr3L_4542859_4542907;chr3L_4552105_4553455 38.10 NA NA 38.10 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG9425,I_chr3L_14783173_14784369 chr3L + chr3L_14783173_14784369;chr3L_14783173_14784970 chr3L_14783173_14785138 chr3L_14783073_14783172;chr3L_14785139_14785560 16.67 16.67 25.00 0.00 NA 20.00 0.00 0.00 11.76 NA 0.00 0.00 0.00 0.00 0.00 41.18 16.67 NA 0.00 28.57 NA 33.33 14.29 0.00 NA NA 20.00 0.00 40.00 16.67 33.33 NA 81.82 16.67 33.33 0.00 33.33 NA NA 44.44 NA 16.67 20.00 0.00 NA NA NA 22.22 9.09 NA 16.67 0.00 NA NA 0.00 NA NA 20.00 K intron_retention Ef1gamma,E_chr3R_25046218_25047549 chr3R + chr3R_25046788_25046916 chr3R_25046787_25046788;chr3R_25046916_25046917 chr3R_25046365_25046787;chr3R_25046917_25047835 100.00 100.00 99.93 100.00 100.00 100.00 99.93 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.96 100.00 100.00 100.00 100.00 100.00 100.00 99.92 99.91 99.95 99.95 100.00 100.00 99.97 100.00 100.00 99.95 99.92 100.00 100.00 100.00 99.95 99.95 100.00 100.00 99.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21121740_21122250 chr2L_21121770_21122250 chr2L_21122251_21122389;chr2L_21121716_21121739 15.10 12.77 15.38 11.54 20.69 18.18 12.28 17.31 28.12 11.11 8.33 11.54 8.33 10.00 6.67 14.81 NA 31.82 3.70 25.86 9.38 26.47 12.24 12.20 9.68 20.00 14.58 9.09 31.03 23.33 20.00 30.00 28.57 15.69 16.00 20.41 15.38 4.35 18.42 3.12 20.83 14.29 15.38 10.53 NA 19.35 25.00 20.00 19.05 NA 13.33 6.67 NA NA 6.45 3.70 26.09 5.88 K jcn_only_AD CG8323,CG18327 chr2R + chr2R_10053147_10053647 chr2R_10053230_10053647 chr2R_10053648_10054496;chr2R_10053094_10053146 97.37 92.59 100.00 87.50 NA NA 93.75 95.24 97.22 NA NA 96.23 NA NA 100.00 92.31 NA 100.00 NA 95.31 NA NA 97.30 100.00 100.00 100.00 96.67 95.24 100.00 100.00 96.30 97.44 92.31 94.87 100.00 100.00 98.15 96.67 91.18 97.30 100.00 97.67 NA 100.00 97.50 94.29 100.00 98.04 97.67 100.00 100.00 94.87 96.15 100.00 96.67 97.14 100.00 96.36 K alternative_donor l(3)82Fd,I_chr3R_1125296_1161435,I_chr3R_1125296_1175189,I_chr3R_1129905_1160126,I_chr3R_1140028_1160126,I_chr3R_1147660_1148709 chr3R - chr3R_1148848_1149386;chr3R_1148848_1149460;chr3R_1148848_1149413 chr3R_1148848_1149160 chr3R_1148710_1148847;chr3R_1149461_1149489 20.00 NA NA 33.33 NA NA 20.00 20.00 25.00 NA NA 40.00 NA NA NA 28.57 NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Snx6,RI_chr2L_8218680_8218853,I_chr2L_8230332_8238998 chr2L - chr2L_8219807_8219869 chr2L_8219806_8219807;chr2L_8219869_8219870 chr2L_8219362_8219806;chr2L_8219870_8219991 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.31 0.84 0.00 0.00 K jcn_only_AD Syx16,RI_chrX_20264515_20264584 chrX - chrX_20264515_20264588 chrX_20264515_20264584 chrX_20264415_20264514;chrX_20264589_20264684 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 2.17 0.00 2.22 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 4.17 0.00 3.00 0.00 1.25 0.00 3.77 1.67 1.75 2.99 1.79 0.00 0.99 1.25 1.29 2.75 0.00 1.49 3.03 1.56 1.16 0.00 0.00 0.00 1.22 0.00 1.08 0.00 0.00 0.94 0.00 2.08 0.00 1.64 K cassette pyd,I_chr3R_4654041_4664113,I_chr3R_4749124_4756437 chr3R - chr3R_4654041_4657863 chr3R_4654041_4654556;chr3R_4656728_4657863 chr3R_4654557_4656727 chr3R_4653941_4654040;chr3R_4657864_4657996 76.56 67.96 78.21 70.27 76.56 83.33 87.95 87.23 85.19 72.94 82.00 80.19 16.28 88.33 83.12 86.96 79.03 83.33 83.33 80.52 82.76 73.68 71.51 63.69 67.65 74.55 71.76 68.97 63.33 79.69 90.00 72.73 80.00 86.92 72.90 86.60 65.24 61.95 62.78 74.74 75.47 85.62 84.21 68.48 79.59 74.29 67.27 86.81 90.83 63.92 65.36 73.42 74.67 58.72 85.54 65.94 79.52 91.40 K intron_retention fs(1)h,I_chrX_7938425_7938871,I_chrX_7938425_7938878,I_chrX_7938449_7944184,I_chrX_7950171_7952371,I_chrX_7954192_7955240 chrX - chrX_7938064_7938365 chrX_7938063_7938064;chrX_7938365_7938366 chrX_7937940_7938063;chrX_7938366_7938424 0.00 0.00 0.00 7.35 2.56 0.00 7.27 3.45 5.56 0.00 2.94 0.00 3.92 4.44 4.17 2.38 0.00 0.00 2.27 2.38 0.00 4.35 4.29 3.92 2.78 0.00 1.92 3.77 0.00 1.69 2.56 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 4.00 0.00 2.97 0.00 1.59 0.00 0.00 0.00 0.00 1.28 0.00 2.63 0.00 0.00 0.00 3.57 0.00 0.00 0.00 K jcn_only_AD CG12753,CG14894,RI_chr3R_12268071_12268135,RI_chr3R_12268071_12268141,RI_chr3R_12268071_12268661,Pak3 chr3R - chr3R_12268071_12268661;chr3R_12268071_12268145;chr3R_12268071_12268124;chr3R_12268071_12268135 chr3R_12268071_12268141 chr3R_12267971_12268070;chr3R_12268662_12268688 1.33 1.25 2.70 1.33 0.00 0.00 0.00 0.00 1.56 0.00 2.13 0.93 0.00 0.00 0.00 1.64 1.85 1.59 1.59 1.77 3.70 3.17 0.00 0.92 2.13 0.00 1.52 0.00 4.92 0.00 2.22 1.35 1.10 3.06 0.00 6.25 1.43 1.32 1.25 1.61 1.15 3.15 2.27 2.86 1.15 1.69 3.81 0.00 0.00 3.23 0.00 1.47 2.35 1.19 0.00 1.01 1.60 0.00 K jcn_only_AA CG7203,cdc14,RI_chr2L_7806524_7806667 chr2L - chr2L_7804916_7805059 chr2L_7804919_7805059 chr2L_7805060_7805788;chr2L_7804571_7804915 33.33 27.03 22.22 43.90 41.03 25.00 40.00 37.25 44.71 NA 39.13 33.96 37.78 41.94 21.43 34.29 25.64 42.86 41.03 37.50 45.24 25.00 30.91 39.02 NA 28.21 34.21 NA 31.82 33.33 26.32 26.09 28.57 31.37 27.03 24.14 28.57 27.78 31.15 31.48 31.03 35.38 28.12 28.00 52.50 37.14 30.00 33.33 33.82 22.22 33.33 43.48 23.08 8.33 37.21 42.86 34.62 42.00 N jcn_only_AA CkIIalpha,I_chr3L_23092989_23093344,RI_chr3L_23094196_23095221 chr3L + chr3L_23092824_23092891;chr3L_23092824_23093319 chr3L_23092824_23093344 chr3L_23092680_23092823;chr3L_23093345_23093444 78.57 NA NA NA NA NA 32.26 NA 80.00 NA NA NA NA NA NA 78.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG5931 chr3L - chr3L_15954580_15954637 chr3L_15954579_15954580;chr3L_15954637_15954638 chr3L_15953956_15954579;chr3L_15954638_15954920 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.02 0.00 0.00 1.57 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Apc chr3R - chr3R_24666548_24670281 chr3R_24666548_24667940 chr3R_24662621_24666547;chr3R_24670282_24670491 1.54 1.47 1.25 2.06 1.33 1.67 2.82 1.75 1.67 0.95 1.85 2.52 1.22 1.27 1.23 1.80 1.59 1.61 1.18 2.63 1.52 13.75 2.41 1.37 2.00 1.54 2.04 3.23 1.45 1.12 1.59 3.12 1.04 1.98 2.56 3.03 1.01 1.47 1.19 0.47 2.38 1.90 1.82 1.18 0.00 2.27 0.00 1.39 0.71 0.00 2.11 1.72 2.27 0.00 1.39 0.00 0.00 0.00 K alternative_donor CG1399,I_chr2R_3574133_3574191 chr2R - chr2R_3574133_3574212 chr2R_3574133_3574191 chr2R_3574049_3574132;chr2R_3574213_3574291 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 3.03 1.23 0.00 0.00 0.00 0.00 2.38 0.00 3.17 0.00 3.85 0.00 3.45 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6719 chr3R - chr3R_7235327_7235403 chr3R_7235326_7235327;chr3R_7235403_7235404 chr3R_7234932_7235326;chr3R_7235404_7235609 1.03 0.00 0.00 2.53 0.00 0.00 3.36 1.24 0.41 0.00 0.00 2.65 0.00 1.04 2.33 2.34 0.00 0.00 1.69 1.78 0.00 1.16 1.62 1.50 0.67 0.00 0.37 2.80 3.38 0.00 0.50 1.41 1.33 1.76 0.00 1.35 1.03 0.00 1.43 1.52 2.13 0.93 0.00 1.26 0.45 1.38 0.00 2.58 2.46 0.44 1.11 0.85 0.98 1.09 0.66 1.13 0.20 0.88 K alternative_donor RpL27,I_chr3R_21510239_21510298,RI_chr3R_21510239_21510441,I_chr3R_21510239_21510464,I_chr3R_21510239_21510656,I_chr3R_21510239_21510726 chr3R - chr3R_21510239_21510464;chr3R_21510239_21510739;chr3R_21510239_21510680;chr3R_21510239_21510298;chr3R_21510239_21510746 chr3R_21510239_21510656 chr3R_21510139_21510238;chr3R_21510747_21510756 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG14712,CG10535,I_chr3R_7498847_7498975 chr3R + chr3R_7479961_7480016 chr3R_7479961_7480013 chr3R_7478578_7479960;chr3R_7480017_7480248 2.78 3.23 2.44 0.00 0.00 2.86 1.64 2.67 2.74 3.03 2.94 0.00 2.44 2.78 4.26 3.85 3.23 2.33 3.85 6.17 3.03 3.67 2.70 1.69 0.00 0.00 3.85 10.00 2.67 0.00 2.82 1.85 1.89 2.99 0.00 0.00 2.22 0.00 3.64 3.33 3.85 3.66 5.13 2.08 2.50 1.72 5.13 2.78 4.88 6.41 3.70 4.35 2.38 6.06 2.33 1.52 3.49 5.79 K jcn_only_AD Lam chr2L + chr2L_5542656_5543324;chr2L_5542864_5543324;chr2L_5542661_5543324 chr2L_5543273_5543324 chr2L_5543325_5543794;chr2L_5542527_5542655 0.84 0.00 1.41 0.00 2.41 0.00 1.49 1.63 1.83 0.70 3.49 1.79 1.45 2.63 1.67 1.15 3.57 1.06 1.08 1.06 1.49 1.30 0.49 0.53 0.84 0.00 0.00 0.60 1.32 0.00 1.10 1.05 0.52 1.89 0.00 0.82 0.39 0.00 0.80 0.86 0.00 1.73 4.30 1.26 0.57 0.00 2.56 0.00 1.78 0.00 0.00 0.00 0.00 0.00 3.09 0.66 0.00 0.00 K intron_retention Arp66B chr3L - chr3L_8107894_8108129 chr3L_8107893_8107894;chr3L_8108129_8108130 chr3L_8107357_8107893;chr3L_8108130_8108444 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6493640_6498054;chr2R_6493563_6498054;chr2R_6457648_6498054 chr2R_6449696_6498054 chr2R_6498055_6499020 33.69 24.00 35.29 37.68 20.00 34.04 40.00 32.50 30.43 41.38 42.31 32.61 47.06 28.57 27.45 27.45 27.78 35.90 21.21 37.21 34.78 37.78 31.94 41.67 44.83 31.43 36.73 33.33 NA 55.00 28.57 NA 52.94 23.23 21.05 55.56 34.88 44.90 35.71 39.24 NA 24.53 16.67 29.79 NA 43.48 21.74 44.12 32.04 16.67 37.93 25.58 37.93 NA 25.49 35.00 16.00 24.00 K jcn_only_AD CG15881,RI_chr3L_19799338_19799394,RI_chr3L_19799338_19799408,Kap-alpha1 chr3L + chr3L_19798419_19799405;chr3L_19798903_19799405 chr3L_19799338_19799405 chr3L_19799406_19799494;chr3L_19798405_19798418 100.00 100.00 95.45 100.00 NA NA 100.00 92.86 100.00 NA 95.65 100.00 NA NA NA 94.74 NA 100.00 92.00 97.96 91.67 100.00 NA 93.94 NA NA 89.66 NA NA 100.00 100.00 100.00 100.00 100.00 95.00 NA 100.00 100.00 96.67 98.48 NA 94.29 NA 100.00 100.00 98.04 97.87 100.00 100.00 100.00 97.14 100.00 100.00 97.44 96.00 97.78 100.00 100.00 K cassette Plc21C,I_chr2L_336547_337937,I_chr2L_343730_344038 chr2L + chr2L_336547_337937 chr2L_336547_337015;chr2L_337199_337937 chr2L_337016_337198 chr2L_336447_336546;chr2L_337938_338037 100.00 85.71 100.00 92.86 100.00 100.00 88.89 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 85.71 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 K alternative_acceptor CG7741,I_chr2R_7192031_7192092 chr2R + chr2R_7192031_7192092 chr2R_7192031_7192088 chr2R_7191931_7192030;chr2R_7192093_7192192 93.75 90.00 90.00 100.00 NA NA 100.00 93.33 93.75 NA NA 100.00 NA NA NA 100.00 NA 100.00 88.89 100.00 87.50 90.91 100.00 94.12 100.00 NA 100.00 92.86 NA NA 93.75 NA 100.00 100.00 90.00 100.00 100.00 91.67 92.31 100.00 90.00 94.74 NA 91.67 NA NA 92.31 87.50 95.00 92.31 100.00 100.00 91.67 81.82 NA 91.67 100.00 90.91 K intron_retention Mes2,CEF_chr3L_22939285_22939369 chr3L + chr3L_22939041_22939369 chr3L_22939040_22939041;chr3L_22939369_22939370 chr3L_22938759_22939040;chr3L_22939370_22939469 13.83 12.50 19.35 17.35 17.14 12.90 25.71 21.74 21.25 4.84 14.55 15.44 17.86 22.86 11.84 26.92 15.94 13.58 22.22 16.13 12.96 10.48 13.92 10.85 11.59 12.99 15.31 8.99 14.41 10.68 16.88 14.93 8.39 20.37 9.82 6.12 7.43 10.42 11.97 11.82 13.95 14.05 15.38 10.08 10.87 12.31 13.89 8.75 18.12 22.22 11.41 13.83 11.11 11.27 13.00 20.51 18.82 10.19 K cassette E_chr2RHet_2881760_2912543,eIF-4B,I_chr2RHet_2903246_2912532,I_chr2RHet_2904787_2912543,I_chr2RHet_2912605_2917250 chr2RHet + chr2RHet_2903246_2915424 chr2RHet_2903246_2912543;chr2RHet_2912605_2915424 chr2RHet_2912544_2912604 chr2RHet_2903146_2903245;chr2RHet_2915425_2915456 84.25 86.96 88.46 68.32 92.86 85.19 76.32 82.54 82.35 55.56 NA 80.85 NA 85.19 72.41 84.62 94.74 81.82 83.87 75.68 NA 85.71 95.83 86.96 76.47 73.33 95.65 90.91 58.82 88.89 74.24 85.71 87.50 88.64 91.67 72.22 90.91 90.91 88.24 81.58 68.89 88.00 80.00 79.41 68.89 83.02 78.12 80.77 80.30 72.73 92.31 92.31 75.68 85.00 89.19 86.21 85.71 75.00 K alternative_donor CG14777,CG14778 chrX + chrX_1360963_1361835 chrX_1360967_1361835 chrX_1361836_1361997;chrX_1360741_1360962 4.01 3.57 6.90 0.00 0.00 3.12 0.00 2.94 3.17 0.00 14.29 7.02 6.67 5.88 3.23 NA 0.00 0.00 7.69 5.77 3.45 25.00 6.00 4.48 8.11 0.00 6.06 13.64 2.86 5.26 8.00 6.06 9.09 1.92 3.45 3.45 1.67 1.92 1.23 6.98 9.09 3.85 4.35 5.26 0.00 4.17 5.56 18.18 4.76 2.38 5.26 0.00 0.00 0.00 7.32 1.96 2.08 16.67 K jcn_only_AD vlc chr2R + chr2R_1589953_1590371;chr2R_1589894_1590371;chr2R_1589799_1590371;chr2R_1590318_1590371;chr2R_1589807_1590371;chr2R_1590294_1590371;chr2R_1589722_1590371;chr2R_1589693_1590371 chr2R_1589805_1590371 chr2R_1590372_1590451;chr2R_1589612_1589692 1.85 1.82 2.90 1.90 3.64 0.00 1.03 0.79 5.08 0.00 0.00 0.82 1.35 2.70 2.78 4.13 4.26 0.00 1.56 2.19 5.66 2.86 0.00 3.03 2.27 0.00 0.00 6.45 3.33 1.89 2.38 4.17 5.08 1.45 2.13 1.92 0.00 0.00 1.43 1.22 0.00 3.79 1.37 0.00 0.00 1.85 0.00 0.00 2.14 1.79 3.92 0.00 3.51 2.94 1.14 0.00 4.35 2.17 K intron_retention CG7956,CE_chr3R_17350242_17350304 chr3R + chr3R_17350372_17350806 chr3R_17350371_17350372;chr3R_17350806_17350807 chr3R_17350312_17350371;chr3R_17350807_17350869 20.36 NA NA NA NA NA NA NA 36.36 NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.17 NA 12.50 23.08 NA NA NA NA NA NA NA 7.69 NA NA NA NA NA 17.65 26.32 NA NA NA NA NA NA NA NA NA N intron_retention 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5992573_5992699,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5992573_5994971 chr2R_5992572_5992573;chr2R_5994971_5994972 chr2R_5992473_5992572;chr2R_5994972_5995071 55.27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.53 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Btk29A,I_chr2L_8262681_8277370,I_chr2L_8298341_8298782,I_chr2L_8298341_8300884 chr2L - chr2L_8298341_8300817;chr2L_8298341_8300505 chr2L_8298341_8300714 chr2L_8298241_8298340;chr2L_8300818_8301040 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Mcm2 chr3R + chr3R_4092962_4093018 chr3R_4092961_4092962;chr3R_4093018_4093019 chr3R_4090565_4092961;chr3R_4093019_4093653 0.00 0.00 0.00 0.00 1.82 0.00 0.00 1.24 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 2.86 1.37 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor mu2,I_chr3L_1945373_1945436,I_chr3L_1945382_1945647 chr3L - chr3L_1945592_1945647;chr3L_1945574_1945647 chr3L_1945529_1945647 chr3L_1945648_1945655;chr3L_1945437_1945528 10.00 10.00 13.33 4.00 8.33 0.00 19.05 4.76 9.68 20.00 8.33 8.33 7.69 9.09 20.00 15.38 9.09 26.67 10.00 6.25 8.33 33.33 5.88 5.88 0.00 12.50 13.33 14.29 16.67 12.50 9.09 14.29 10.00 19.05 25.00 0.00 9.09 9.09 13.33 5.00 0.00 5.00 18.18 22.22 28.57 12.50 10.00 8.33 18.75 30.77 8.33 14.29 11.11 42.86 11.76 0.00 0.00 7.69 K intron_retention CG5703 chrX + chrX_17526494_17526622 chrX_17526493_17526494;chrX_17526622_17526623 chrX_17526344_17526493;chrX_17526623_17527141 0.00 0.00 1.15 0.00 0.00 0.00 0.00 2.06 0.00 0.00 1.92 0.00 0.00 0.00 1.57 0.00 0.00 2.90 1.37 0.95 1.35 0.00 0.00 0.00 2.35 0.00 1.89 0.00 3.03 0.00 1.27 1.41 2.27 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.67 1.41 0.00 0.00 0.00 0.00 1.45 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 K intron_retention RI_chr2L_1170364_1170429,CG4887,REI_chr2L_1179197_1179859 chr2L + chr2L_1174571_1174909 chr2L_1174570_1174571;chr2L_1174909_1174910 chr2L_1174497_1174570;chr2L_1174910_1174987 12.50 12.50 21.74 10.53 28.57 7.69 33.33 25.53 19.35 0.00 NA 21.74 41.18 26.09 33.33 17.39 NA 12.50 16.67 12.90 36.84 8.70 11.54 18.92 15.00 0.00 6.45 0.00 2.38 17.65 8.89 9.68 1.75 10.81 8.70 25.00 14.58 0.00 9.52 11.11 4.76 14.29 40.00 9.76 9.52 8.33 17.86 8.33 20.00 12.12 19.51 17.65 21.43 12.50 18.75 3.85 20.83 10.87 K cassette noncoding_18164,F_chr3R_17192061_17200781,RI_chr3R_17192434_17192695,RI_chr3R_17192441_17192695,RI_chr3R_17192484_17193084 chr3R + chr3R_17192484_17193084 chr3R_17192484_17192695;chr3R_17192932_17193084 chr3R_17192696_17192931 chr3R_17192384_17192483;chr3R_17193085_17193184 100.00 100.00 94.12 96.67 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 94.74 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 96.15 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG17528,RI_chr2R_706735_711409,I_chr2R_706735_711443,I_chr2R_707374_711443 chr2R - chr2R_707442_711409;chr2R_707442_711443 chr2R_707442_711615 chr2R_706793_707441;chr2R_711616_711627 9.09 0.00 20.00 0.00 16.67 0.00 5.88 5.56 15.00 NA NA 0.00 16.67 0.00 NA 11.76 11.11 NA 9.09 8.33 NA NA 20.00 NA 0.00 16.67 0.00 NA NA NA 14.29 NA NA 5.88 0.00 NA NA NA 0.00 12.50 NA 9.09 20.00 0.00 NA NA NA 16.67 15.00 NA 14.29 NA NA NA 11.11 NA NA NA N multi_cassette Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16107821_16110644 chr3L_16107821_16107893;chr3L_16107944_16108768;chr3L_16108931_16109131;chr3L_16109342_16110644 chr3L_16107894_16107943;chr3L_16108769_16108930;chr3L_16109132_16109341 chr3L_16107721_16107820;chr3L_16110645_16111208 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.10 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG34413,I_chr2R_20770882_20770948,F_chr2R_20770891_20770943,I_chr2R_20771136_20772048,I_chr2R_20773500_20774745 chr2R + chr2R_20770882_20770948 chr2R_20770882_20770943 chr2R_20770801_20770881;chr2R_20770949_20771043 98.85 98.65 98.78 100.00 98.33 100.00 98.73 98.77 97.90 100.00 97.83 100.00 98.18 98.39 98.63 98.39 100.00 100.00 100.00 98.47 98.21 100.00 99.12 98.11 98.41 98.36 98.85 100.00 100.00 98.67 94.81 96.77 98.61 98.95 100.00 98.55 99.29 100.00 98.91 99.33 97.67 99.24 100.00 100.00 98.39 100.00 98.25 100.00 99.15 100.00 96.23 100.00 98.08 100.00 98.72 100.00 98.55 100.00 K jcn_only_AA EDTP chr2R - chr2R_13322478_13331840 chr2R_13322481_13331840 chr2R_13331841_13332419;chr2R_13321630_13322477 100.00 NA NA NA NA NA 96.15 100.00 100.00 NA NA 96.97 NA NA 100.00 NA NA NA NA 100.00 NA NA 100.00 95.24 NA NA 100.00 NA NA NA NA NA NA 100.00 NA 92.31 100.00 NA 100.00 96.67 NA 100.00 NA 95.00 NA NA NA NA 96.15 NA NA NA NA NA 95.45 NA NA NA K alternative_acceptor C3G chrX - chrX_6681282_6681383 chrX_6681300_6681383 chrX_6681384_6681553;chrX_6681129_6681281 13.87 12.82 11.25 12.74 14.15 13.08 25.98 12.57 13.10 13.85 19.35 13.50 12.24 17.00 15.83 10.91 16.30 15.11 19.27 16.01 20.59 28.57 13.50 14.29 37.97 29.76 12.80 13.64 12.22 13.10 17.46 23.81 14.81 13.87 11.11 33.73 13.49 19.57 11.06 12.21 30.36 15.38 13.89 11.97 13.33 18.35 10.87 15.92 14.55 14.04 11.41 10.71 8.33 8.33 15.67 13.79 10.42 17.48 K alternative_donor E(bx),I_chr3L_246324_246699 chr3L - chr3L_246324_246885;chr3L_246324_246438;chr3L_246324_246794;chr3L_246324_246382;chr3L_246324_246388;chr3L_246324_246427 chr3L_246324_246408 chr3L_246224_246323;chr3L_246886_246901 5.41 9.52 4.00 2.56 10.53 8.33 3.64 6.25 13.85 0.00 0.00 5.77 11.76 11.54 3.70 7.55 8.00 9.09 3.23 7.84 9.52 5.26 10.00 6.25 6.25 4.17 0.00 6.67 0.00 5.56 0.00 0.00 12.50 5.66 6.67 0.00 8.00 0.00 6.25 14.81 0.00 4.08 7.14 12.50 NA 0.00 0.00 0.00 10.17 0.00 3.45 7.14 0.00 0.00 3.33 0.00 0.00 0.00 K alternative_acceptor CG1599,I_chr2R_5729744_5729805 chr2R - chr2R_5729673_5729805;chr2R_5729731_5729805 chr2R_5729744_5729805 chr2R_5729806_5729905;chr2R_5729644_5729672 0.00 0.00 1.37 0.00 0.00 0.00 0.77 0.72 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 1.20 1.41 0.00 0.00 1.02 0.00 0.00 0.00 0.00 3.23 2.78 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 1.41 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor Droj2,RI_chr3R_9207981_9208471,RI_chr3R_9208529_9209185 chr3R + chr3R_9207981_9209185;chr3R_9207981_9209956 chr3R_9207981_9208471 chr3R_9207926_9207980;chr3R_9209957_9210301 0.37 0.53 0.44 0.34 0.19 0.47 0.53 0.35 0.46 0.36 0.54 0.24 0.39 0.38 0.65 0.61 0.41 2.21 0.34 0.51 0.35 0.35 0.28 0.31 0.68 0.33 0.55 0.37 1.00 0.22 0.47 0.25 0.49 0.33 0.27 0.23 0.52 0.36 0.17 0.28 0.30 0.30 0.61 0.37 0.61 0.33 0.34 0.44 0.48 0.31 0.51 0.55 0.45 0.38 0.39 0.35 0.26 0.12 K jcn_only_AA oho23B,I_chr2L_2856176_2856244,I_chr2L_2856573_2856630,RI_chr2L_2856673_2856772 chr2L + chr2L_2856176_2856246;chr2L_2856176_2856222 chr2L_2856176_2856218 chr2L_2856076_2856175;chr2L_2856247_2856287 0.00 0.04 0.00 0.04 0.03 0.00 0.00 0.04 0.04 0.00 0.02 0.00 0.02 0.00 0.03 0.02 0.00 0.02 0.02 0.02 0.00 0.00 0.03 0.07 0.04 0.00 0.00 0.00 0.04 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.03 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.07 0.00 0.02 0.00 0.02 K intron_retention wun2,I_chr2R_5302867_5303906,I_chr2R_5304606_5304660 chr2R + chr2R_5302867_5304149 chr2R_5302866_5302867;chr2R_5304149_5304150 chr2R_5302767_5302866;chr2R_5304150_5304298 1.11 0.70 0.00 0.00 1.22 0.00 0.00 0.75 1.95 0.00 0.00 1.44 0.00 0.00 1.52 1.45 0.00 1.37 0.00 1.72 0.00 1.31 3.21 0.00 0.00 1.64 1.35 1.11 3.92 2.68 2.08 1.59 0.98 2.45 1.57 2.94 0.00 0.00 0.00 4.00 0.00 1.03 0.00 0.68 1.49 1.15 2.22 3.77 1.59 0.00 1.80 1.89 0.00 1.54 0.62 1.45 0.00 0.00 K intron_retention CRMP,I_chr3R_1401648_1403314 chr3R + chr3R_1402136_1402757 chr3R_1402135_1402136;chr3R_1402757_1402758 chr3R_1401897_1402135;chr3R_1402758_1402947 44.50 50.00 NA 71.43 41.67 NA NA NA 40.00 NA NA 21.05 NA 60.00 56.25 NA NA NA 36.36 60.87 NA NA 36.36 50.00 NA NA 70.00 NA NA 54.55 7.69 NA 14.29 46.15 NA NA 47.83 42.11 64.71 20.00 NA 37.50 NA NA 14.29 56.25 30.77 NA 53.85 42.86 61.54 NA 41.67 66.67 NA 41.67 63.64 25.00 N intron_retention CG31367,REI_chr3R_2190161_2190277,CG33097,I_chr3R_2191538_2191675,I_chr3R_2199103_2199426 chr3R - chr3R_2188953_2190725 chr3R_2188952_2188953;chr3R_2190725_2190726 chr3R_2188560_2188952;chr3R_2190726_2190876 18.46 13.04 27.59 11.76 26.32 22.22 34.21 16.33 16.18 7.14 16.00 20.69 23.81 31.58 28.57 30.00 21.05 21.74 21.88 18.46 12.50 4.76 21.43 17.14 21.74 0.00 21.43 26.32 6.67 15.00 31.58 3.85 2.70 18.18 14.29 21.43 15.38 14.29 14.58 22.03 19.05 22.22 22.73 14.29 2.27 29.17 9.09 19.05 19.72 26.32 16.22 22.73 15.38 0.00 24.14 14.29 7.69 11.76 K cassette simj,I_chr3L_10680263_10680313 chr3L + chr3L_10679362_10680337 chr3L_10679362_10680151;chr3L_10680263_10680337 chr3L_10680152_10680262 chr3L_10679064_10679361;chr3L_10680338_10680413 93.10 93.94 88.57 89.74 84.00 88.89 94.44 97.56 90.77 94.74 96.00 91.30 96.30 95.00 95.12 96.88 93.10 85.29 93.10 92.98 95.83 82.20 88.33 92.31 87.18 96.15 93.51 93.10 82.67 94.44 92.59 92.00 93.22 88.10 94.44 94.64 92.50 86.96 88.73 95.60 94.74 98.15 86.96 92.31 92.59 88.24 97.30 91.25 92.16 84.21 96.15 91.43 100.00 96.55 93.94 89.74 96.67 97.22 K intron_retention CG10948,I_chr3L_12840257_12841136 chr3L - chr3L_12838954_12840149 chr3L_12838953_12838954;chr3L_12840149_12840150 chr3L_12838834_12838953;chr3L_12840150_12840186 45.80 NA NA 45.45 NA NA 75.00 NA 50.00 NA NA 30.77 NA NA NA NA NA NA 60.00 53.33 NA 21.05 NA NA NA NA NA NA NA NA NA NA NA 38.46 NA NA NA NA NA NA NA 46.15 NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA K alternative_acceptor Rab39 chrX + chrX_7629369_7629812 chrX_7629369_7629796 chrX_7628958_7629368;chrX_7629813_7630512 100.00 100.00 92.86 100.00 100.00 100.00 96.30 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 92.86 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_last_exon CG11876,CG11877 chr3R + chr3R_24939878_24940815 chr3R_24939878_24940150 chr3R_24940816_24941227 chr3R_24940151_24940729 chr3R_24939716_24939877 38.89 38.02 35.98 46.49 37.25 38.05 39.66 43.32 34.64 33.67 34.18 35.21 45.51 44.64 42.97 40.21 38.04 50.22 42.33 38.64 38.14 28.98 33.57 37.59 38.66 48.69 37.32 43.33 43.05 33.82 38.89 45.93 45.42 41.64 37.96 36.25 30.49 33.14 33.62 42.45 50.39 40.61 41.95 34.36 48.77 43.75 40.39 45.93 40.59 39.80 37.92 36.13 37.25 38.66 40.96 38.74 43.13 56.07 K alternative_donor CG1416,I_chr2L_21758100_21758179,I_chr2L_21758143_21758183,I_chr2L_21758143_21758209 chr2L + chr2L_21758100_21758201 chr2L_21758143_21758201 chr2L_21758202_21758279;chr2L_21758043_21758099 100.00 100.00 98.51 100.00 97.78 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.04 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 98.46 100.00 98.04 100.00 97.50 94.74 100.00 100.00 100.00 99.01 100.00 99.13 98.11 100.00 100.00 98.28 100.00 97.73 100.00 98.36 100.00 100.00 96.30 100.00 100.00 100.00 98.78 98.46 K intron_retention CG1749,I_chrX_11379530_11379593 chrX + chrX_11377968_11378078 chrX_11377967_11377968;chrX_11378078_11378079 chrX_11377539_11377967;chrX_11378079_11379157 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 2.50 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 1.75 0.00 0.00 3.12 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention l(1)G0193 chrX - chrX_7836032_7836090 chrX_7836031_7836032;chrX_7836090_7836091 chrX_7835510_7836031;chrX_7836091_7836477 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.23 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.14 0.00 0.00 0.30 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention NTPase chr2L - chr2L_2881305_2881381 chr2L_2881304_2881305;chr2L_2881381_2881382 chr2L_2881215_2881304;chr2L_2881382_2882511 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 31.82 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG3621,noncoding_21543,I_chrX_2066779_2066838 chrX + chrX_2066779_2066838;chrX_2066739_2066838 chrX_2066737_2066838 chrX_2066839_2066938;chrX_2066679_2066736 0.33 0.60 0.00 0.00 2.20 0.72 0.00 0.49 0.52 0.87 0.00 0.37 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.42 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.84 0.58 0.35 0.69 0.36 0.40 1.35 0.33 0.98 0.60 0.00 0.76 0.00 0.00 0.46 0.00 0.57 0.92 0.51 0.00 0.65 0.00 0.00 0.72 N intron_retention noncoding_4495,CG30438 chr2R + chr2R_1386531_1387136 chr2R_1386530_1386531;chr2R_1387136_1387137 chr2R_1386130_1386530;chr2R_1387137_1387329 100.00 NA NA 100.00 NA NA NA NA 43.75 NA NA NA NA NA NA 100.00 NA NA 36.36 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K alternative_donor eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341925_20342041;chr3L_20341636_20342041;chr3L_20341509_20342041;chr3L_20341486_20342041;chr3L_20341522_20342041;chr3L_20341751_20342041;chr3L_20341530_20342041;chr3L_20341629_20342041;chr3L_20341598_20342041;chr3L_20341759_20342041 chr3L_20341865_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 0.00 0.00 0.00 0.00 0.00 0.00 3.03 1.41 1.52 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 1.72 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor dlg1,I_chrX_11281967_11282030 chrX + chrX_11263833_11268301;chrX_11263833_11268289 chrX_11263833_11267849 chrX_11263820_11263832;chrX_11268302_11268531 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG30122,I_chr2R_14526123_14526189 chr2R - chr2R_14526123_14526323 chr2R_14526123_14526189 chr2R_14526023_14526122;chr2R_14526324_14526753 0.35 0.00 0.00 0.62 0.90 0.86 0.93 1.33 0.00 0.87 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.93 0.75 0.00 1.48 0.00 0.00 3.88 0.62 0.48 0.00 0.00 0.41 0.56 0.55 1.11 0.35 0.61 0.00 0.38 0.85 0.92 0.00 1.16 0.50 0.70 0.00 3.14 0.00 0.00 0.00 0.00 0.78 1.35 0.00 0.00 1.01 0.00 K intron_retention chico chr2L - chr2L_10245352_10245409 chr2L_10245351_10245352;chr2L_10245409_10245410 chr2L_10245220_10245351;chr2L_10245410_10245590 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6359 chr3R + chr3R_8455477_8455540 chr3R_8455476_8455477;chr3R_8455540_8455541 chr3R_8454944_8455476;chr3R_8455541_8455790 93.75 100.00 97.22 99.04 95.83 95.00 97.47 97.37 96.80 77.78 100.00 95.06 93.33 92.73 92.86 97.30 97.37 91.18 94.12 98.28 85.19 78.79 92.59 88.89 95.65 96.88 95.00 93.33 94.44 90.48 92.16 84.62 85.00 94.94 86.67 96.15 100.00 88.89 90.00 86.49 93.33 97.10 97.67 81.82 87.80 88.52 91.18 82.35 96.47 89.19 87.18 95.65 93.75 94.74 92.86 90.32 94.64 96.04 K multi_cassette plexA,RI_chr4_1036247_1047588,RI_chr4_1040642_1047395,RI_chr4_1044307_1046841,RF_chr4_1044307_1047399 chr4 - chr4_1036247_1047588 chr4_1036247_1037001;chr4_1039336_1039395;chr4_1040642_1047588 chr4_1037002_1039335;chr4_1039396_1040641 chr4_1036147_1036246;chr4_1047589_1047625 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042891_5042960;chr2L_5042885_5042960 chr2L_5042888_5042960 chr2L_5042961_5043016;chr2L_5042835_5042884 16.67 14.81 16.00 24.14 7.14 15.79 13.64 16.22 16.98 23.81 9.09 17.78 7.69 16.67 28.00 13.64 13.33 10.53 20.69 20.34 25.00 10.71 16.67 29.03 20.00 13.64 19.23 12.00 15.15 24.14 16.67 14.71 23.53 24.39 15.38 16.67 14.29 21.05 13.33 16.95 21.05 24.39 12.50 13.16 11.43 18.37 22.22 14.55 16.33 19.05 21.95 26.32 26.67 23.81 12.50 20.69 23.33 23.64 K jcn_only_AA CG3689 chr3L + chr3L_9404522_9404578 chr3L_9404522_9404560 chr3L_9404148_9404521;chr3L_9404579_9404843 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 2.56 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG15609,I_chr2R_12898038_12898391,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12898482_12898658 chr2R_12898481_12898482;chr2R_12898658_12898659 chr2R_12898392_12898481;chr2R_12898659_12899053 4.88 5.00 1.59 5.63 2.56 4.26 14.81 10.45 2.68 0.00 0.00 8.33 8.33 7.50 11.86 7.81 4.88 2.44 11.63 5.98 5.41 4.44 6.02 3.75 8.33 5.41 5.56 4.76 8.89 9.52 6.25 2.94 2.78 3.33 0.00 5.13 4.11 3.92 4.23 7.27 7.41 4.88 3.03 7.14 0.00 2.27 0.00 11.63 9.76 2.70 7.27 0.00 3.70 0.00 6.90 0.00 0.00 2.50 K intron_retention CG42595,I_chr2RHet_3155517_3174709,RI_chr2RHet_3175044_3179353,RI_chr2RHet_3179300_3179586,I_chr2RHet_3179481_3179586 chr2RHet - chr2RHet_3179494_3179586 chr2RHet_3179493_3179494;chr2RHet_3179586_3179587 chr2RHet_3179354_3179493;chr2RHet_3179587_3179598 8.50 12.50 10.00 20.93 NA 14.29 5.97 12.70 8.75 NA NA 14.00 0.00 13.79 4.76 9.89 4.76 NA 11.63 4.12 0.00 0.00 12.50 NA NA NA NA NA NA 0.00 0.00 NA 0.00 10.61 13.33 11.76 5.56 NA NA 0.00 NA 10.20 9.09 15.38 NA 0.00 NA 3.85 8.24 NA 13.33 0.00 NA NA 0.00 NA NA 2.56 K jcn_only_AD Cdk4,RI_chr2R_12471503_12471656 chr2R + chr2R_12467202_12468346;chr2R_12467432_12468346;chr2R_12467241_12468346;chr2R_12467275_12468346;chr2R_12467474_12468346;chr2R_12467225_12468346;chr2R_12467227_12468346;chr2R_12467039_12468346 chr2R_12467261_12468346 chr2R_12468347_12468520;chr2R_12467030_12467038 0.00 0.00 0.00 2.22 NA 4.00 0.00 0.00 0.00 NA 0.00 3.33 0.00 3.23 0.00 0.00 3.85 0.00 2.38 0.00 0.00 0.00 5.00 12.50 NA 0.00 0.00 NA NA NA 0.00 NA 15.00 0.00 NA 0.00 0.00 NA NA 10.00 NA 3.17 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K intron_retention Fis1,I_chr2R_1491917_1491981,I_chr2R_1491917_1492087,I_chr2R_1492154_1492214 chr2R - chr2R_1491917_1491972 chr2R_1491916_1491917;chr2R_1491972_1491973 chr2R_1491817_1491916;chr2R_1491973_1492017 1.32 3.39 1.33 8.00 2.56 0.00 3.05 2.42 5.52 0.00 0.00 2.96 0.00 2.50 0.00 4.00 2.94 2.90 3.77 0.00 0.00 0.00 2.99 1.52 2.86 6.94 7.25 4.55 0.00 0.00 2.99 0.00 0.00 4.73 0.00 7.41 0.00 0.00 0.00 1.35 4.35 1.56 0.00 1.61 0.00 0.00 0.00 0.00 1.88 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 3.39 K jcn_only_AD bgm,RI_chr2L_14017027_14018034 chr2L + chr2L_14017027_14018034 chr2L_14017038_14018034 chr2L_14018035_14018134;chr2L_14016927_14017026 97.62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.24 NA NA NA NA NA NA NA NA NA K intron_retention p47,Aldh-III,I_chr2R_3356541_3356614,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3352775_3352835 chr2R_3352774_3352775;chr2R_3352835_3352836 chr2R_3352504_3352774;chr2R_3352836_3353180 0.00 0.00 0.00 0.41 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.54 1.54 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14005,I_chr2L_5801609_5801677 chr2L - chr2L_5801609_5801671 chr2L_5801608_5801609;chr2L_5801671_5801672 chr2L_5801509_5801608;chr2L_5801672_5801957 0.00 NA NA 6.67 NA 0.00 NA 5.88 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA 23.08 0.00 0.00 14.29 NA 0.00 NA NA 0.00 9.52 NA 0.00 3.85 0.00 0.00 3.45 0.00 0.00 0.00 NA 3.70 NA 0.00 0.00 4.35 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA K alternative_donor CG13585,I_chr2R_20419710_20419962,E_chr2R_20420167_20420418 chr2R + chr2R_20419160_20419962 chr2R_20419258_20419962 chr2R_20419963_20420062;chr2R_20419149_20419159 55.56 80.00 50.00 68.75 18.18 27.27 65.00 47.83 37.50 83.33 38.46 41.94 27.78 55.56 40.00 58.82 25.00 50.00 47.37 63.64 50.00 77.78 61.54 53.33 55.56 35.71 63.64 NA 83.33 87.50 41.67 60.00 70.00 50.00 NA 87.50 57.89 46.67 55.56 76.47 NA 43.24 41.67 76.92 53.85 75.00 35.71 80.00 38.89 46.15 85.71 77.78 66.67 55.56 30.00 52.94 67.65 80.95 K intron_retention CG2926,I_chr3R_1410401_1410501,I_chr3R_1410558_1410893,I_chr3R_1410841_1410893 chr3R - chr3R_1410401_1410893 chr3R_1410400_1410401;chr3R_1410893_1410894 chr3R_1410301_1410400;chr3R_1410894_1410993 0.00 0.00 0.00 8.33 0.00 0.00 6.82 0.00 2.47 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 2.94 3.70 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 2.38 NA 0.00 2.74 NA 0.00 0.00 0.00 NA 0.00 0.00 14.29 0.00 K intron_retention WDR79 chr2L - chr2L_6126844_6126901 chr2L_6126843_6126844;chr2L_6126901_6126902 chr2L_6126655_6126843;chr2L_6126902_6127553 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 2.27 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 1.98 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 K intron_retention CG32486 chr3L - chr3L_3056753_3056818 chr3L_3056752_3056753;chr3L_3056818_3056819 chr3L_3056486_3056752;chr3L_3056819_3056922 0.00 0.00 0.00 0.00 0.00 0.00 3.30 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 1.64 2.50 0.00 0.00 K intron_retention Sec22,RI_chrX_700599_700665 chrX + chrX_701304_701386 chrX_701303_701304;chrX_701386_701387 chrX_701002_701303;chrX_701387_702250 0.00 1.64 2.38 3.21 0.00 0.00 0.00 0.00 1.18 1.82 0.00 2.96 0.00 0.00 0.00 0.00 0.00 0.00 1.22 5.56 0.00 0.00 0.00 1.00 0.00 0.00 1.43 2.44 0.00 0.00 0.00 0.00 0.74 0.00 0.00 2.60 2.01 0.00 1.20 0.00 0.00 0.74 2.94 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 1.75 0.00 2.90 1.08 0.00 0.00 0.00 K jcn_only_AD I_chr2R_2754447_2755071,Spn4,CG9454 chr2R - chr2R_2764239_2764449;chr2R_2764239_2764302 chr2R_2764239_2764725 chr2R_2764101_2764238 73.57 NA 85.00 NA NA NA NA 60.00 70.37 73.91 NA NA NA NA NA NA NA NA NA 81.48 NA NA NA 60.00 NA NA NA NA NA NA NA NA NA 53.85 NA NA NA NA NA 73.81 NA 59.09 NA NA 86.21 73.33 NA NA NA NA 77.27 NA NA NA NA NA 65.00 84.48 K intron_retention CG31342,I_chr3R_8813079_8814327,I_chr3R_8822346_8822403 chr3R + chr3R_8812432_8812509 chr3R_8812431_8812432;chr3R_8812509_8812510 chr3R_8812211_8812431;chr3R_8812510_8813078 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Phm,RI_chr2R_19875078_19875636 chr2R - chr2R_19875078_19875636 chr2R_19875078_19875140;chr2R_19875199_19875636 chr2R_19875141_19875198 chr2R_19874990_19875077;chr2R_19875637_19875736 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.35 100.00 100.00 99.34 100.00 99.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.50 100.00 K intron_retention CG42272,I_chr3L_5804425_5804485 chr3L + chr3L_5798514_5798572 chr3L_5798513_5798514;chr3L_5798572_5798573 chr3L_5797320_5798513;chr3L_5798573_5798849 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 12.50 NA NA NA NA NA NA NA K intron_retention CG1358,I_chr2R_3485171_3489936 chr2R - chr2R_3484566_3484769 chr2R_3484565_3484566;chr2R_3484769_3484770 chr2R_3484455_3484565;chr2R_3484770_3484894 2.99 0.00 2.38 14.29 0.00 0.00 7.69 0.00 5.88 1.39 0.00 1.90 5.26 0.00 3.92 3.85 6.06 8.11 0.00 3.12 2.94 6.25 4.76 5.00 7.46 8.57 4.00 12.12 0.00 2.33 3.77 0.00 0.00 4.29 4.44 6.25 2.01 2.00 1.56 0.99 10.91 1.46 6.67 0.00 0.95 3.61 3.75 6.78 1.68 2.38 4.04 5.00 2.99 2.86 4.35 0.00 2.25 2.94 K intron_retention CG3714,I_chr2L_4190825_4191774,I_chr2L_4191897_4192115,I_chr2L_4191897_4192632,I_chr2L_4192178_4192632,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4190825_4192632 chr2L_4190824_4190825;chr2L_4192632_4192633 chr2L_4190725_4190824;chr2L_4192633_4192688 9.52 NA NA NA NA NA 22.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.52 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG1024 chr3R - chr3R_2203902_2204191 chr3R_2203902_2204127 chr3R_2203688_2203901;chr3R_2204192_2205676 30.00 NA NA 83.33 NA NA 50.00 36.84 30.00 75.00 NA 39.13 40.00 36.36 7.69 38.46 NA NA NA 23.81 NA 30.77 NA 18.75 33.33 25.00 NA NA 35.71 NA 23.53 NA NA 27.78 NA 40.00 38.46 NA 23.08 14.29 NA 36.84 NA NA 27.27 41.67 18.18 NA 22.22 25.00 21.05 NA NA NA 16.67 20.00 23.08 41.67 K intron_retention I_chr3R_8822346_8822403,CG7518 chr3R + chr3R_8825247_8825316 chr3R_8825246_8825247;chr3R_8825316_8825317 chr3R_8825163_8825246;chr3R_8825317_8825382 13.16 8.33 8.70 11.63 4.17 10.53 18.60 12.50 13.85 12.50 13.04 12.96 28.57 10.71 9.09 17.78 20.00 18.52 11.76 19.61 17.65 12.00 21.21 17.07 33.33 20.00 12.20 NA NA 19.05 40.00 NA 8.33 17.39 0.00 10.00 9.68 13.79 8.33 15.62 NA 9.52 4.35 10.71 NA 14.29 15.00 NA 19.15 10.53 13.16 21.74 NA NA 14.81 12.50 47.06 31.25 K intron_retention I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,I_chr3R_17183927_17185306,I_chr3R_17184319_17185084,I_chr3R_17184319_17185284,noncoding_18168,RI_chr3R_17184792_17185306,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,RI_chr3R_17189607_17189988,I_chr3R_17190098_17190207,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17184792_17185306 chr3R_17184791_17184792;chr3R_17185306_17185307 chr3R_17184692_17184791;chr3R_17185307_17185384 65.38 70.00 70.00 63.16 NA 78.57 47.06 75.00 62.50 NA NA 76.67 71.43 68.75 76.92 78.26 60.00 75.00 55.00 64.29 53.33 36.84 52.38 84.62 63.64 73.33 90.91 NA NA 46.15 55.56 NA 47.62 65.38 45.45 66.67 NA NA 63.64 70.83 NA 66.67 NA NA NA 68.42 43.75 52.94 74.19 63.64 69.23 NA NA 45.45 71.43 56.25 71.43 42.11 K intron_retention MB8.chr3R.pasa.66,ref1,RI_chr3R_2904130_2904237,RI_chr3R_2904305_2904543,I_chr3R_2904452_2904543 chr3R - chr3R_2904452_2904543 chr3R_2904451_2904452;chr3R_2904543_2904544 chr3R_2904352_2904451;chr3R_2904544_2904643 94.12 100.00 NA 93.33 NA NA 91.67 88.89 90.91 NA 90.00 100.00 100.00 87.50 NA 100.00 NA NA NA 94.44 88.89 87.50 100.00 100.00 90.91 NA 93.75 94.12 100.00 NA NA 100.00 NA 90.00 NA NA 92.31 NA 87.50 100.00 88.89 100.00 NA NA 90.91 NA NA 100.00 100.00 100.00 NA NA NA NA 100.00 NA NA NA K alternative_donor CG4572,FI_chr3R_15689914_15690042 chr3R - chr3R_15689914_15690042;chr3R_15689914_15689997 chr3R_15689914_15690046 chr3R_15689814_15689913;chr3R_15690047_15690114 93.23 91.11 92.86 90.00 94.23 92.73 91.53 94.78 93.48 94.44 91.67 88.42 96.97 89.09 89.66 87.50 95.52 91.49 91.03 94.74 94.12 88.00 91.30 98.18 90.70 85.19 85.45 100.00 88.24 94.44 94.74 100.00 95.24 94.12 100.00 NA 91.67 96.15 98.33 94.34 NA 93.23 89.09 95.08 92.31 96.55 91.30 94.74 89.47 94.64 90.62 96.88 81.48 93.33 93.83 94.59 90.00 89.29 K jcn_only_AD l(2)gl,I_chr2L_17213_21135,RI_chr2L_20021_20830,I_chr2L_20974_21065 chr2L - chr2L_20021_21065;chr2L_20021_21135 chr2L_20021_20830 chr2L_19921_20020;chr2L_21136_21145 15.91 NA NA 23.81 NA NA 28.57 20.69 21.43 NA NA 14.29 NA NA NA 3.45 NA NA 21.74 NA NA NA NA NA NA NA NA NA NA NA 9.52 NA NA 15.15 NA NA NA NA NA NA NA 14.81 4.76 20.00 NA NA NA 10.00 16.67 NA NA NA NA NA NA NA NA NA K alternative_acceptor l(2)k14710 chr2R - chr2R_2097980_2098051 chr2R_2097989_2098051 chr2R_2098052_2098165;chr2R_2097914_2097979 100.00 100.00 100.00 96.00 100.00 93.75 100.00 95.24 94.74 NA 100.00 100.00 100.00 100.00 93.33 94.74 100.00 100.00 100.00 95.83 100.00 NA 94.12 100.00 100.00 100.00 100.00 88.89 87.50 100.00 100.00 NA 90.91 100.00 88.89 100.00 100.00 100.00 100.00 92.86 NA 96.15 88.89 100.00 91.67 100.00 91.67 100.00 100.00 100.00 93.33 NA 100.00 100.00 93.33 100.00 100.00 88.89 K intron_retention E_chr2R_15335697_15335808,noncoding_8016 chr2R + chr2R_15335713_15335763 chr2R_15335712_15335713;chr2R_15335763_15335764 chr2R_15335382_15335712;chr2R_15335764_15336107 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.94 100.00 99.98 99.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.97 99.96 100.00 100.00 100.00 99.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N cassette Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11835112_11836312 chr2R_11835112_11835624;chr2R_11836216_11836312 chr2R_11835625_11836215 chr2R_11834432_11835111;chr2R_11836313_11836490 96.08 96.28 96.08 92.34 96.83 94.74 98.17 93.48 96.25 94.23 92.78 96.44 92.59 97.17 97.30 97.24 96.23 97.54 97.78 93.67 98.25 96.50 95.00 94.59 94.62 95.68 95.79 98.72 97.01 97.86 92.45 96.61 97.20 94.79 96.83 96.12 96.67 94.92 94.43 96.02 95.93 95.24 95.92 96.65 93.64 96.02 97.86 96.69 95.78 98.14 95.83 98.29 94.74 92.94 99.32 92.74 96.24 95.83 K intron_retention Taz,I_chr2R_8641602_8641912,I_chr2R_8641633_8641971,I_chr2R_8648027_8648303 chr2R - chr2R_8641633_8641912 chr2R_8641632_8641633;chr2R_8641912_8641913 chr2R_8641533_8641632;chr2R_8641913_8642012 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention scny,I_chr3L_5763034_5768288 chr3L + chr3L_5764894_5764950 chr3L_5764893_5764894;chr3L_5764950_5764951 chr3L_5764718_5764893;chr3L_5764951_5765475 100.00 98.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.92 98.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8173541_8173600 chr2L_8173540_8173541;chr2L_8173600_8173601 chr2L_8173276_8173540;chr2L_8173601_8173908 0.00 0.00 0.00 2.59 0.00 0.00 1.67 0.78 1.66 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.67 1.50 0.00 0.00 2.60 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.81 1.51 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention moody chrX - chrX_1939983_1940048 chrX_1939982_1939983;chrX_1940048_1940049 chrX_1938324_1939982;chrX_1940049_1940544 0.00 0.00 NA 0.00 NA NA NA 6.67 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 NA 4.44 0.00 4.17 NA NA 0.00 18.75 NA 0.00 NA NA NA 9.09 NA NA 3.77 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 8.70 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA K alternative_acceptor CG14442,RI_chrX_6586052_6586105,I_chrX_6586147_6586435 chrX - chrX_6585388_6586435 chrX_6586147_6586435 chrX_6586436_6586535;chrX_6583705_6585387 0.00 0.00 0.00 2.13 0.00 0.00 2.00 1.69 1.02 0.00 0.00 1.03 2.56 2.56 0.00 1.92 0.00 0.00 0.00 0.87 2.27 0.00 1.64 1.72 0.00 0.00 0.00 3.23 0.00 2.00 0.00 3.03 0.00 1.15 2.94 2.04 1.03 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 1.54 1.56 0.00 2.08 0.00 1.41 0.00 0.00 0.00 0.00 2.17 1.72 2.38 K cassette PMCA,E_chr4_350055_363541,I_chr4_350959_363547,I_chr4_352629_358161,RI_chr4_355160_363547,I_chr4_371836_372509,I_chr4_373671_374568,I_chr4_376108_379519 chr4 - chr4_350966_363547;chr4_352629_363547 chr4_352629_358161,chr4_350966_358161;chr4_358174_363547 chr4_358162_358173 chr4_350897_350965;chr4_363548_363641 0.00 1.15 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG11399,I_chr3L_20775431_20775486 chr3L - chr3L_20775431_20775490 chr3L_20775431_20775486 chr3L_20775331_20775430;chr3L_20775491_20775586 0.00 2.94 0.00 0.00 NA NA 0.00 0.00 0.00 5.00 0.00 2.04 0.00 0.00 0.00 0.00 NA 0.00 NA 1.01 0.00 0.00 1.37 0.00 0.00 NA 2.78 0.00 0.00 3.85 NA NA 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 4.55 0.00 0.00 0.00 0.00 0.00 1.82 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor spri,I_chrX_10404621_10469422,I_chrX_10413811_10440661,I_chrX_10417598_10440661 chrX - chrX_10417595_10438418 chrX_10417598_10438418 chrX_10438419_10438429;chrX_10417498_10417594 75.00 NA 75.00 NA NA NA 81.82 88.89 80.95 87.50 NA 64.29 NA NA 63.64 88.89 NA NA 66.67 80.95 NA 53.85 87.50 75.00 100.00 88.89 75.00 72.22 100.00 88.89 NA NA 81.82 68.75 NA 71.43 68.18 80.00 71.43 70.59 NA 75.00 NA 66.67 NA 70.00 60.00 63.64 75.00 NA 91.67 NA NA NA NA NA NA NA K intron_retention CG42348,I_chr3L_20149990_20151579 chr3L - chr3L_20148928_20149000 chr3L_20148927_20148928;chr3L_20149000_20149001 chr3L_20148833_20148927;chr3L_20149001_20149098 0.00 3.77 0.00 3.12 0.00 0.00 0.00 0.00 1.09 0.00 0.00 2.27 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 2.50 1.30 0.00 0.00 0.00 0.00 NA 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 K alternative_donor CG10283,I_chr2L_18473497_18474076 chr2L - chr2L_18473497_18474118 chr2L_18473497_18474076 chr2L_18473459_18473496;chr2L_18474119_18474176 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA K intron_retention mus210,RI_chr2R_11200323_11202128 chr2R + chr2R_11204120_11204184 chr2R_11204119_11204120;chr2R_11204184_11204185 chr2R_11203025_11204119;chr2R_11204185_11204652 0.71 0.00 0.00 1.60 0.00 0.00 2.48 2.60 0.96 0.00 0.00 0.00 0.00 0.00 1.09 0.80 2.78 0.00 0.00 0.93 1.37 10.00 1.64 0.00 0.00 0.85 3.54 5.49 2.00 1.75 0.93 0.81 0.71 1.54 0.00 2.15 0.65 1.14 1.27 0.00 0.00 2.22 0.00 0.00 0.62 1.60 0.00 1.25 0.62 0.84 1.94 4.35 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG30344,RI_chr2R_5033951_5034150,I_chr2R_5036518_5036570 chr2R + chr2R_5035601_5035657 chr2R_5035600_5035601;chr2R_5035657_5035658 chr2R_5035444_5035600;chr2R_5035658_5035999 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 8.33 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.92 0.00 0.00 4.76 0.00 0.00 20.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 NA K intron_retention CG4301,I_chrX_16309561_16309689,I_chrX_16328892_16329177,I_chrX_16335942_16337525 chrX + chrX_16308054_16308119 chrX_16308053_16308054;chrX_16308119_16308120 chrX_16307727_16308053;chrX_16308120_16308373 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9904 chrX + chrX_2515346_2515411 chrX_2515345_2515346;chrX_2515411_2515412 chrX_2514858_2515345;chrX_2515412_2516173 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ssp4,I_chr2R_13409412_13410357,RI_chr2R_13409412_13411004,I_chr2R_13409412_13411328,I_chr2R_13409412_13411588,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13408434_13410357 chr2R_13408433_13408434;chr2R_13410357_13410358 chr2R_13408151_13408433;chr2R_13410358_13410457 100.00 90.91 100.00 100.00 100.00 100.00 95.45 100.00 96.30 NA NA 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 NA NA 93.33 92.86 NA NA 100.00 NA NA 77.78 100.00 NA 100.00 100.00 91.67 NA 100.00 100.00 100.00 86.67 NA 95.65 100.00 NA NA 88.89 NA 100.00 95.24 NA 93.75 NA NA NA 100.00 NA NA 90.91 K alternative_acceptor Tak1 chrX - chrX_20393791_20394085 chrX_20393848_20394085 chrX_20394086_20394385;chrX_20393532_20393790 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.36 100.00 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.25 98.65 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette Ten-m,EI_chr3L_22298865_22299141,I_chr3L_22300015_22300646,I_chr3L_22374182_22399991 chr3L - chr3L_22298865_22300646 chr3L_22298865_22299141;chr3L_22300015_22300646 chr3L_22299142_22300014 chr3L_22298765_22298864;chr3L_22300647_22300652 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K alternative_acceptor RI_chrX_502548_513324,CG13366,I_chrX_505719_505889,I_chrX_508729_508806,I_chrX_509727_511477,I_chrX_510004_511407,I_chrX_513176_513324,I_chrX_513519_513631 chrX - chrX_506242_506314 chrX_506245_506314 chrX_506315_506466;chrX_506125_506241 91.29 84.62 88.89 92.31 91.67 NA 81.82 92.31 90.91 80.00 NA 94.44 88.89 NA 91.67 76.92 85.71 NA 100.00 93.33 NA 100.00 82.61 95.24 80.00 100.00 93.75 90.91 NA 92.86 NA 90.00 100.00 86.67 90.91 90.00 81.48 93.33 77.78 100.00 NA 94.44 100.00 91.67 NA 91.67 100.00 80.00 90.48 90.00 100.00 88.89 NA 80.00 100.00 73.33 100.00 NA K intron_retention CG4538,Surf6 chr3R - chr3R_15726097_15726153 chr3R_15726096_15726097;chr3R_15726153_15726154 chr3R_15725947_15726096;chr3R_15726154_15727523 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.65 3.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention barr chr2L - chr2L_20060725_20060828 chr2L_20060724_20060725;chr2L_20060828_20060829 chr2L_20060412_20060724;chr2L_20060829_20060976 62.16 47.62 73.33 62.50 80.00 50.00 55.56 74.19 52.50 70.00 NA 62.50 70.59 63.16 76.00 61.11 71.43 69.23 76.19 60.53 66.67 80.00 57.69 48.15 52.63 84.21 68.97 68.75 90.91 61.11 70.00 NA 63.64 70.73 41.67 39.29 60.00 50.00 50.00 48.65 63.64 71.88 75.00 42.86 NA 52.63 30.43 54.55 71.43 47.83 62.16 57.14 46.15 30.00 75.00 52.17 46.67 NA N alternative_last_exon mmd chrX - chrX_15854946_15856018;chrX_15848478_15856018 chrX_15852624_15856018 chrX_15854840_15854945;chrX_15848319_15848477 chrX_15852351_15852623 chrX_15856019_15856024 18.18 33.33 11.11 11.76 25.00 16.67 46.15 15.00 32.00 NA NA 23.08 35.71 16.67 13.33 33.33 18.18 18.18 26.67 23.08 14.29 NA NA NA NA 12.50 NA NA NA NA 22.22 NA NA 15.38 NA NA NA NA NA NA NA 25.00 16.67 NA NA NA NA NA 13.89 NA NA NA NA NA 7.69 NA NA NA K jcn_only_AD CG9705,I_chr3L_16773492_16773604,I_chr3L_16773517_16773604,I_chr3L_16774043_16774562 chr3L + chr3L_16773521_16773604;chr3L_16773517_16773604 chr3L_16773492_16773604 chr3L_16773605_16773704;chr3L_16773417_16773491 0.00 0.89 1.60 0.00 0.96 0.90 1.75 2.72 1.54 1.52 0.88 0.00 0.00 0.00 0.00 0.62 0.00 2.30 0.00 0.00 0.00 0.00 0.00 1.77 1.23 1.64 1.16 2.90 0.00 0.00 1.12 0.00 1.25 1.78 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.51 0.00 0.00 0.61 0.00 0.00 0.51 0.93 0.00 0.93 0.00 0.00 0.00 0.81 0.00 1.01 1.53 K intron_retention CG30122,I_chr2R_14526123_14526189 chr2R - chr2R_14521791_14522274 chr2R_14521790_14521791;chr2R_14522274_14522275 chr2R_14520931_14521790;chr2R_14522275_14522446 2.67 5.95 5.45 2.99 6.82 0.00 2.54 2.99 5.56 0.00 0.00 3.15 3.03 0.00 4.71 0.00 3.03 2.67 3.03 5.65 0.00 6.15 2.78 1.59 3.03 0.00 3.70 0.00 0.00 4.65 3.77 2.08 0.00 5.30 0.00 0.00 0.00 0.00 3.92 2.04 0.00 2.99 3.08 3.28 0.00 2.35 0.00 2.17 3.75 0.00 2.35 3.85 0.00 4.76 3.09 0.00 1.43 3.30 K jcn_only_AA CG40351,CREFI_chr3LHet_606442_607073 chr3LHet + chr3LHet_595061_595211 chr3LHet_595061_595115 chr3LHet_594780_595060;chr3LHet_595212_595365 100.00 100.00 100.00 100.00 95.24 96.15 100.00 100.00 100.00 100.00 100.00 98.33 97.67 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 92.50 100.00 NA 97.67 100.00 100.00 94.87 97.96 100.00 100.00 98.33 NA 98.75 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 K jcn_only_AD CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2439416_2439498;chr3L_2436229_2439498 chr3L_2435133_2439498 chr3L_2439499_2439583;chr3L_2434626_2435132 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA msn,I_chr3L_2558033_2560115,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2558393_2560115;chr3L_2558036_2560115 chr3L_2558390_2560115 chr3L_2560116_2560215;chr3L_2557936_2558035 70.24 67.51 69.52 76.86 67.51 67.13 48.74 70.24 73.50 64.68 67.72 72.63 81.99 73.63 68.74 76.07 75.49 76.20 79.81 72.78 73.50 79.13 65.01 60.08 66.59 71.92 58.03 52.86 83.98 73.54 76.31 75.40 76.23 70.65 69.52 66.60 75.40 54.55 69.10 75.06 66.00 69.12 70.26 75.46 70.29 69.17 58.79 81.17 73.36 57.27 59.05 62.93 65.19 59.68 72.08 65.80 52.94 75.85 K intron_retention unc-13,RI_chr4_892852_895828,RI_chr4_894198_895828,E_chr4_894796_894871,I_chr4_895008_895828,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_892852_893839 chr4_892851_892852;chr4_893839_893840 chr4_892753_892851;chr4_893840_894197 2.44 0.00 4.17 10.81 0.00 0.00 5.31 2.90 5.63 4.35 0.00 9.52 12.50 0.00 0.00 14.00 5.56 0.00 2.56 2.82 5.56 0.00 0.00 0.00 0.00 0.00 9.52 5.00 0.00 6.25 0.00 16.67 NA 5.45 0.00 8.51 0.00 NA 0.00 0.00 6.67 6.90 0.00 4.48 0.00 2.38 0.00 7.02 9.38 2.44 2.22 0.00 0.00 0.00 2.70 0.00 5.26 6.82 K intron_retention Hcs,I_chr3R_1303481_1304607 chr3R + chr3R_1305044_1305108 chr3R_1305043_1305044;chr3R_1305108_1305109 chr3R_1304840_1305043;chr3R_1305109_1305294 8.11 0.00 7.69 0.00 4.76 5.56 10.71 3.70 6.52 9.52 10.53 8.33 11.76 0.00 4.76 15.38 14.29 0.00 17.39 10.71 10.53 14.29 8.16 6.25 2.86 0.00 8.11 0.00 12.50 8.33 7.69 23.53 4.35 8.33 8.70 0.00 5.88 6.25 2.08 7.02 14.29 6.82 NA 8.70 20.00 21.74 6.25 24.00 5.71 10.00 10.53 NA 0.00 4.00 14.29 9.09 9.68 0.00 K alternative_donor CG7358,I_chrX_18786713_18786791,I_chrX_18786719_18786812 chrX - chrX_18786719_18786812 chrX_18786719_18786791 chrX_18786619_18786718;chrX_18786813_18786891 100.00 100.00 97.22 97.30 100.00 96.43 94.12 100.00 98.11 92.31 100.00 98.21 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 97.30 97.73 100.00 95.45 100.00 100.00 96.67 96.67 97.56 97.44 100.00 98.31 100.00 100.00 97.30 100.00 97.06 100.00 100.00 100.00 98.28 95.83 100.00 100.00 100.00 100.00 98.21 97.87 100.00 100.00 100.00 93.75 100.00 96.00 95.83 100.00 100.00 K alternative_acceptor CG2219,I_chr4_199813_199889,RI_chr4_202143_202194 chr4 - chr4_199838_199889;chr4_199822_199889 chr4_199813_199889 chr4_199890_199942;chr4_199758_199812 0.00 0.00 3.33 2.04 0.00 0.00 1.67 2.17 1.69 0.00 6.67 2.00 3.12 0.00 0.00 1.49 3.85 0.00 0.00 2.33 7.69 0.00 2.70 3.45 0.00 5.56 2.56 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 5.56 7.14 0.00 0.00 7.14 2.86 0.00 0.00 1.67 3.12 0.00 0.00 0.00 0.00 3.70 0.00 3.23 0.00 K jcn_only_AD CG12213 chr3R - chr3R_7792009_7792209 chr3R_7792009_7792176 chr3R_7791324_7792008;chr3R_7792210_7792455 41.71 38.94 44.34 41.71 40.00 40.68 46.85 37.50 40.80 37.70 36.78 43.88 36.78 41.38 44.80 33.98 36.46 48.72 36.13 41.38 43.84 60.00 34.85 41.73 49.28 41.28 50.86 47.17 55.17 41.67 38.27 43.75 43.96 44.00 38.75 41.24 42.73 50.54 47.41 53.63 57.46 40.74 33.33 52.27 49.30 45.16 37.93 49.48 33.69 27.16 50.36 42.03 37.17 39.51 33.33 34.92 45.61 56.29 K alternative_acceptor Pkc98E chr3R + chr3R_24870160_24870221 chr3R_24870160_24870218 chr3R_24870089_24870159;chr3R_24870222_24871440 62.50 65.00 60.87 82.61 50.00 61.11 56.00 64.00 70.83 58.82 62.50 64.29 85.71 88.24 67.86 75.00 75.00 43.75 60.00 62.50 84.62 60.53 70.59 69.57 56.25 47.62 69.57 58.33 52.63 57.14 60.00 NA 78.95 61.29 72.73 61.11 68.89 58.33 66.67 62.50 NA 65.85 52.63 57.69 63.64 66.67 50.00 60.00 60.00 55.56 58.82 73.68 75.00 NA 46.15 70.00 NA NA K intron_retention loco,I_chr3R_18448629_18449211,I_chr3R_18456329_18462522 chr3R - chr3R_18448629_18452035 chr3R_18448628_18448629;chr3R_18452035_18452036 chr3R_18448529_18448628;chr3R_18452036_18452332 10.53 NA NA NA NA NA 10.53 NA 4.17 NA NA 6.67 NA NA NA NA NA NA NA NA NA 14.29 10.53 NA NA NA 23.08 12.50 NA NA NA NA 0.00 NA NA NA NA NA NA 6.25 NA 0.00 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA K alternative_donor CG1657 chrX + chrX_11219635_11222056;chrX_11219604_11222056 chrX_11219544_11222056 chrX_11222057_11222225;chrX_11219475_11219543 100.00 100.00 100.00 100.00 NA NA NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 K alternative_donor Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654157,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15652363_15654272;chrX_15652363_15654499 chrX_15652363_15654157 chrX_15652357_15652362;chrX_15654500_15654599 33.33 NA 50.00 58.33 NA 40.00 50.00 18.18 46.67 NA NA 27.27 33.33 16.67 40.00 28.57 NA 50.00 20.00 45.45 66.67 60.00 60.00 NA 50.00 60.00 25.00 NA 25.00 NA 33.33 NA 66.67 17.65 33.33 33.33 NA NA 33.33 16.67 NA 23.08 50.00 NA NA NA NA 50.00 15.38 NA 33.33 NA NA NA 28.57 NA NA 25.00 K jcn_only_AD dlg1,I_chrX_11298230_11299306 chrX + chrX_11290137_11291857 chrX_11290605_11291857 chrX_11291858_11291945;chrX_11290037_11290136 98.88 97.67 97.93 99.43 95.73 92.11 99.19 93.41 98.69 100.00 98.67 98.68 97.26 98.18 99.26 97.12 89.32 95.04 99.09 95.89 98.98 99.19 98.31 99.32 99.05 100.00 100.00 97.67 100.00 99.03 99.16 100.00 98.94 98.99 98.86 100.00 97.38 96.58 97.69 98.34 100.00 98.57 100.00 98.31 99.23 100.00 100.00 99.36 97.57 100.00 97.86 98.91 100.00 98.88 97.40 98.44 98.51 100.00 N cassette Idgf2,Idgf3 chr2L + chr2L_16451308_16452193 chr2L_16451308_16451375;chr2L_16451928_16452193 chr2L_16451376_16451927 chr2L_16451190_16451307;chr2L_16452194_16453042 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N jcn_only_AA AnnIX,I_chr3R_16895383_16895999 chr3R + chr3R_16895383_16896445 chr3R_16895383_16895999 chr3R_16895283_16895382;chr3R_16896446_16896495 0.00 NA NA 0.00 NA NA NA NA 4.76 NA NA NA NA NA NA NA NA NA NA 2.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA K intron_retention spi,I_chr2L_19569183_19577185,I_chr2L_19569227_19572142,I_chr2L_19569227_19577173 chr2L - chr2L_19571768_19577173 chr2L_19571767_19571768;chr2L_19577173_19577174 chr2L_19571572_19571767;chr2L_19577174_19577273 11.76 NA NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA 11.76 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 33.33 NA NA NA NA NA NA NA K intron_retention MB8.chr3R.pasa.66,CG1091,RI_chr3R_2910490_2910686,RI_chr3R_2911041_2911135,RI_chr3R_2946518_2946663 chr3R - chr3R_2911235_2911603 chr3R_2911234_2911235;chr3R_2911603_2911604 chr3R_2911136_2911234;chr3R_2911604_2911822 25.00 20.00 20.59 33.33 33.33 26.67 27.78 26.00 26.98 29.41 25.00 20.59 22.73 28.57 28.95 28.57 31.25 17.65 31.03 21.54 22.22 70.00 26.67 25.00 38.10 45.45 37.93 25.00 22.73 20.00 40.48 21.43 11.43 26.53 30.43 28.57 33.33 28.57 30.23 24.32 20.83 18.92 24.00 40.91 18.75 35.71 20.69 22.50 19.40 25.00 17.78 33.33 24.00 20.83 37.14 24.24 23.26 19.44 K intron_retention CG7065 chrX + chrX_9038981_9040040 chrX_9038980_9038981;chrX_9040040_9040041 chrX_9036895_9038980;chrX_9040041_9041957 8.33 8.33 5.88 13.04 14.29 14.29 10.26 16.13 10.91 NA 0.00 12.50 14.29 21.05 18.18 11.54 9.09 8.33 12.00 4.65 0.00 0.00 5.00 10.71 NA 10.53 0.00 0.00 0.00 0.00 4.35 NA 8.33 7.69 12.50 4.17 3.45 5.00 5.88 10.81 NA 5.88 9.09 0.00 NA 0.00 0.00 7.14 10.64 12.50 6.90 5.26 NA NA 12.90 9.09 12.50 NA K intron_retention CG7849 chr2R + chr2R_1964611_1964665 chr2R_1964610_1964611;chr2R_1964665_1964666 chr2R_1964481_1964610;chr2R_1964666_1964878 0.00 0.00 0.00 0.00 0.00 0.00 3.57 5.41 6.25 NA 6.67 10.53 NA 0.00 NA 6.45 NA 0.00 0.00 4.76 0.00 NA 10.53 0.00 5.56 0.00 35.29 5.56 NA NA 18.18 NA NA 8.11 NA NA NA NA 0.00 0.00 NA 6.25 0.00 NA 0.00 0.00 6.25 NA 12.12 0.00 8.00 NA NA NA 0.00 0.00 11.11 0.00 K intron_retention oho23B,I_chr2L_2856176_2856244,I_chr2L_2856573_2856630,RI_chr2L_2856673_2856772 chr2L + chr2L_2856306_2856391 chr2L_2856305_2856306;chr2L_2856391_2856392 chr2L_2856279_2856305;chr2L_2856392_2856568 99.92 100.00 100.00 99.88 99.59 99.85 100.00 100.00 100.00 99.77 100.00 99.92 100.00 100.00 99.89 99.83 99.66 99.81 99.82 99.92 100.00 99.46 99.93 99.93 99.90 100.00 99.90 37.45 100.00 99.83 99.86 100.00 99.81 100.00 99.90 100.00 99.79 99.92 99.94 99.93 99.88 99.92 99.80 99.88 99.92 99.94 99.94 100.00 99.89 99.90 99.92 99.82 100.00 99.95 99.87 99.94 100.00 99.92 K cassette klar,I_chr3L_508800_539898,RI_chr3L_517594_539898 chr3L - chr3L_508800_539898 chr3L_508800_514611;chr3L_514706_539898 chr3L_514612_514705 chr3L_508700_508799;chr3L_539899_539998 96.00 97.78 95.65 97.59 96.67 100.00 93.90 97.56 96.00 93.75 88.89 97.87 98.21 98.04 98.11 95.60 95.65 97.50 97.06 97.47 91.43 97.62 90.62 98.04 85.71 90.24 95.65 88.89 88.24 94.12 94.37 95.83 98.41 96.40 94.12 94.23 97.37 96.55 92.50 97.96 95.45 98.98 98.21 95.65 92.86 97.78 96.43 98.53 96.97 96.77 93.55 94.59 80.00 91.67 98.53 97.30 95.83 95.12 K intron_retention CG16892 chrX + chrX_9167945_9168004 chrX_9167944_9167945;chrX_9168004_9168005 chrX_9167421_9167944;chrX_9168005_9168289 6.45 11.76 3.85 17.65 6.90 6.45 8.51 2.22 2.78 0.00 0.00 4.11 10.00 7.14 10.81 6.25 10.00 5.71 0.00 5.63 0.00 11.36 17.65 4.65 13.79 6.45 7.14 11.76 0.00 6.25 10.00 0.00 9.30 3.92 11.11 8.57 5.56 2.38 3.45 12.28 14.29 5.17 9.09 11.54 7.14 10.81 5.00 3.03 3.39 9.68 9.52 4.35 0.00 0.00 12.12 13.04 0.00 0.00 N alternative_donor hiw chrX - chrX_14912959_14945890 chrX_14912959_14913792 chrX_14912845_14912958;chrX_14945891_14946026 50.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG18815 chr3L + chr3L_11622605_11622680 chr3L_11622604_11622605;chr3L_11622680_11622681 chr3L_11622061_11622604;chr3L_11622681_11622698 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 3.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.74 K intron_retention Tre1,I_chrX_5569518_5570588 chrX - chrX_5568186_5568254 chrX_5568185_5568186;chrX_5568254_5568255 chrX_5567863_5568185;chrX_5568255_5568742 0.00 1.39 0.00 0.00 0.00 0.00 0.51 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.69 0.97 0.00 0.00 0.84 0.00 0.00 1.53 0.00 0.00 0.53 0.99 0.53 1.07 1.08 0.00 1.17 0.00 1.21 0.90 0.00 0.00 0.74 0.82 0.70 0.00 0.37 1.77 1.27 0.00 0.00 0.88 0.00 0.00 0.00 0.00 K intron_retention fh,RI_chrX_9042659_9042723 chrX - chrX_9042659_9042727 chrX_9042658_9042659;chrX_9042727_9042728 chrX_9042559_9042658;chrX_9042728_9042823 0.00 4.44 0.00 3.57 0.00 0.00 0.00 0.00 5.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 4.65 0.00 7.69 18.52 4.26 12.82 24.39 0.00 0.00 0.00 3.12 3.23 0.00 3.33 1.54 0.00 3.28 3.92 11.43 0.00 0.00 0.00 5.71 0.00 0.00 0.00 4.08 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 8.33 N jcn_only_AD RpL31,CG1827 chr2R + chr2R_5475162_5475281 chr2R_5475212_5475281 chr2R_5475282_5475378;chr2R_5475113_5475161 100.00 99.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.93 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.95 100.00 100.00 100.00 100.00 99.90 100.00 100.00 100.00 100.00 100.00 99.94 100.00 100.00 100.00 100.00 100.00 K intron_retention Slip1,RI_chr4_684967_689045,I_chr4_685717_686576,RI_chr4_685717_689045,RI_chr4_687548_689045 chr4 + chr4_687559_689755 chr4_687558_687559;chr4_689755_689756 chr4_686581_687558;chr4_689756_690313 25.00 NA 13.33 53.85 25.00 NA 29.17 43.75 21.88 NA NA 29.17 40.00 30.77 26.67 25.00 NA 25.00 23.08 32.26 46.15 13.33 23.53 13.33 23.08 10.53 26.09 NA NA NA NA NA NA 45.00 NA 20.00 11.76 NA 12.50 9.09 NA 33.33 NA 29.41 NA NA 11.76 NA 28.12 NA NA NA NA NA 25.00 26.32 23.53 NA K intron_retention CG10737 chr2R + chr2R_15062289_15062386 chr2R_15062288_15062289;chr2R_15062386_15062387 chr2R_15062082_15062288;chr2R_15062387_15062591 1.53 1.55 1.50 1.11 1.69 0.75 2.90 1.49 2.32 0.00 0.00 2.26 2.00 2.13 1.53 2.46 1.85 1.68 0.00 1.97 0.00 0.00 3.09 0.00 0.95 0.85 0.00 4.55 0.00 0.00 2.13 0.00 2.34 1.84 2.04 2.08 1.00 0.00 1.99 3.45 0.00 1.82 2.88 3.10 2.00 1.52 0.68 5.49 2.53 1.15 1.74 1.00 0.00 0.00 2.01 1.31 1.45 1.33 K intron_retention mfrn,I_chr3R_23770737_23770817,I_chr3R_23771063_23771153,I_chr3R_23771063_23772599 chr3R - chr3R_23771063_23771153 chr3R_23771062_23771063;chr3R_23771153_23771154 chr3R_23770974_23771062;chr3R_23771154_23771253 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD PNUTS,I_chr2L_870553_871317 chr2L + chr2L_870553_871340 chr2L_871275_871340 chr2L_871341_871417;chr2L_870478_870552 29.63 25.37 54.05 22.33 27.78 33.33 32.14 33.33 27.96 23.64 33.33 36.63 31.43 40.85 45.00 39.74 33.33 23.08 46.77 40.32 30.00 17.54 28.03 28.40 38.18 25.00 28.77 38.46 29.63 19.79 32.26 38.10 15.58 34.62 31.37 26.79 22.48 24.42 32.81 25.76 29.63 32.08 25.49 19.84 10.00 21.74 18.57 20.00 33.33 35.71 40.40 32.26 24.00 28.00 29.41 28.81 34.21 11.32 K cassette CG2698,I_chr3R_3828169_3828254,I_chr3R_3828169_3828941,I_chr3R_3828880_3828941,I_chr3R_3829483_3829715,I_chr3R_3830586_3830981 chr3R + chr3R_3828169_3828941 chr3R_3828169_3828275;chr3R_3828880_3828941 chr3R_3828276_3828879 chr3R_3828069_3828168;chr3R_3828942_3829007 100.00 100.00 100.00 98.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 98.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N cassette tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_569905_574512 chr3R_569905_570185;chr3R_570388_574512 chr3R_570186_570387 chr3R_569435_569904;chr3R_574513_574612 100.00 100.00 100.00 86.76 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG2177,I_chr4_334269_334329,I_chr4_334269_334505,I_chr4_334439_334505 chr4 - chr4_334269_334329;chr4_334269_334324 chr4_334269_334373 chr4_334169_334268;chr4_334374_334429 89.39 88.89 91.36 86.03 86.21 88.24 73.49 85.62 84.26 95.00 85.37 91.67 87.34 88.57 91.51 89.78 85.42 93.23 90.00 91.24 89.39 91.67 83.10 93.88 92.31 89.77 87.04 93.75 90.12 90.48 81.44 89.61 86.92 87.31 93.48 94.59 75.00 81.48 95.00 90.00 86.84 87.90 87.88 91.53 90.41 85.86 89.23 90.58 89.50 84.85 88.41 93.33 95.56 91.11 86.46 87.23 87.10 92.78 K intron_retention l(2)k01209,RI_chr2R_13310877_13311160 chr2R + chr2R_13312918_13312974 chr2R_13312917_13312918;chr2R_13312974_13312975 chr2R_13312324_13312917;chr2R_13312975_13313192 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor I_chr4_335584_340074,CG32850,I_chr4_338996_340074,RI_chr4_340294_340597 chr4 + chr4_335584_337018 chr4_335806_337018 chr4_337019_337135;chr4_335522_335583 42.86 NA NA 41.67 NA NA 71.43 40.00 70.00 NA NA 41.67 NA 33.33 NA 66.67 NA NA 42.86 30.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA 46.15 NA NA NA NA NA NA 38.46 NA NA NA NA NA NA NA NA 50.00 K jcn_only_AD scrib,I_chr3R_22362324_22363015,I_chr3R_22381374_22399575,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22362244_22363092;chr3R_22362315_22363092;chr3R_22362254_22363092;chr3R_22362224_22363092;chr3R_22362324_22363092;chr3R_22362142_22363092 chr3R_22362120_22363092 chr3R_22363093_22363115;chr3R_22362112_22362119 19.79 21.79 29.52 17.26 20.00 16.67 22.50 22.84 24.89 16.98 24.39 23.08 21.33 23.60 21.43 26.61 27.27 20.00 19.19 25.22 31.40 37.39 20.16 10.10 17.19 15.00 10.26 2.70 15.83 23.22 19.79 21.62 18.97 25.00 13.74 25.17 26.19 16.42 13.48 14.47 14.14 20.45 18.29 17.65 25.37 15.74 19.23 20.40 16.46 14.58 13.93 25.71 9.30 18.52 16.53 12.24 15.56 26.45 K jcn_only_AD RI_chr3R_7061265_7061322,CG31441,CG31388 chr3R + chr3R_7062215_7062271;chr3R_7062211_7062271 chr3R_7062207_7062271 chr3R_7062272_7063062;chr3R_7062165_7062206 19.23 NA NA 15.62 NA NA 22.86 0.00 19.23 NA NA 20.00 NA NA NA 14.29 NA NA NA 9.09 NA NA NA NA NA NA NA NA NA NA 50.00 NA NA 15.62 NA NA NA NA NA NA NA 15.15 NA NA NA NA 30.00 NA 20.59 NA NA NA NA NA 23.81 NA 19.23 NA K alternative_acceptor CG9779,RI_chr3R_136377_136528 chr3R - chr3R_136371_136508 chr3R_136377_136508 chr3R_136509_136669;chr3R_136277_136370 98.08 96.67 94.44 96.77 96.15 100.00 97.14 100.00 98.15 100.00 100.00 100.00 94.44 95.00 100.00 100.00 94.74 100.00 95.83 98.21 100.00 97.14 97.83 100.00 100.00 95.45 96.43 90.91 100.00 95.83 100.00 94.74 100.00 96.67 92.86 100.00 98.08 96.97 96.88 96.77 100.00 97.56 94.44 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 97.22 98.00 96.00 K alternative_donor dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21308939_21309945 chr2L_21308939_21309938 chr2L_21308288_21308938;chr2L_21309946_21309974 100.00 100.00 100.00 91.67 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 96.55 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 K jcn_only_AD CG4065,RI_chr2R_20024231_20024292,I_chr2R_20024873_20024921 chr2R - chr2R_20024231_20024292 chr2R_20024231_20024290 chr2R_20024131_20024230;chr2R_20024293_20024392 97.18 90.48 100.00 95.35 92.86 NA 96.97 100.00 98.00 NA 100.00 98.39 100.00 100.00 95.45 96.00 100.00 100.00 NA 97.92 NA 96.43 95.45 98.08 100.00 NA 95.35 100.00 100.00 92.59 NA 96.00 100.00 100.00 92.59 100.00 100.00 NA 95.65 94.12 95.65 97.14 NA 100.00 93.10 96.88 96.88 97.22 98.11 96.00 98.00 NA 95.24 96.43 97.06 96.15 100.00 100.00 K cassette CG9306,I_chr2L_13370555_13370608,I_chr2L_13370565_13370841,I_chr2L_13370795_13370841 chr2L - chr2L_13370565_13370841 chr2L_13370565_13370623;chr2L_13370764_13370841 chr2L_13370624_13370763 chr2L_13370465_13370564;chr2L_13370842_13370918 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.17 100.00 99.67 100.00 100.00 100.00 100.00 100.00 99.18 100.00 99.72 100.00 100.00 99.65 100.00 100.00 100.00 100.00 100.00 100.00 99.35 100.00 100.00 99.22 99.51 100.00 100.00 99.69 99.60 99.49 100.00 100.00 99.38 99.12 100.00 100.00 100.00 100.00 100.00 99.19 99.58 99.66 100.00 99.57 100.00 100.00 100.00 99.78 100.00 K jcn_only_AD Npc1a chr2L - chr2L_10218890_10220868;chr2L_10218890_10220796;chr2L_10218890_10220692 chr2L_10218890_10220834 chr2L_10218779_10218889;chr2L_10220869_10220873 8.37 7.27 6.06 9.43 3.70 10.53 7.19 8.00 9.86 11.54 6.67 9.68 5.41 4.35 16.95 5.45 3.51 6.00 9.33 17.95 2.78 3.92 17.78 18.37 4.00 2.08 10.87 NA 13.51 10.00 8.06 NA 11.32 5.88 2.50 12.82 14.63 11.11 8.57 1.43 0.00 10.17 8.16 9.46 NA 0.00 18.18 24.29 9.92 NA 9.09 4.65 NA NA 5.26 4.55 NA 10.26 K jcn_only_AA Atg18,I_chr3L_8182683_8182941 chr3L + chr3L_8180294_8180540;chr3L_8180294_8180586 chr3L_8180294_8180578 chr3L_8180118_8180293;chr3L_8180587_8180676 97.40 97.26 97.40 96.03 100.00 100.00 90.28 99.15 99.32 89.47 96.36 99.15 98.39 96.83 98.88 98.77 97.18 93.44 96.20 99.19 97.53 93.43 99.15 96.84 98.46 98.73 98.82 97.87 96.08 95.60 97.98 95.45 96.58 100.00 95.38 91.23 96.58 98.15 100.00 93.39 91.43 96.05 94.34 98.96 96.10 92.31 100.00 94.19 98.55 100.00 95.56 97.62 92.73 97.01 99.04 98.51 99.00 97.78 K jcn_only_AA MESK2,RI_chr2R_17398771_17398908,I_chr2R_17401067_17401713 chr2R + chr2R_17399683_17403481;chr2R_17399683_17401733;chr2R_17399683_17401713 chr2R_17399683_17403392 chr2R_17399598_17399682;chr2R_17403482_17403550 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor phtf,I_chr2R_2629598_2630209 chr2R + chr2R_2632283_2632550 chr2R_2632283_2632342 chr2R_2632108_2632282;chr2R_2632551_2632699 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG10245 chr2R + chr2R_10770723_10770850 chr2R_10770722_10770723;chr2R_10770850_10770851 chr2R_10769425_10770722;chr2R_10770851_10771551 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.47 0.00 0.00 0.00 0.00 1.03 1.04 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.60 0.00 1.12 0.00 1.22 0.85 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 1.92 1.23 0.00 0.00 0.00 0.73 0.00 1.14 0.00 0.00 1.59 0.00 2.60 0.00 K intron_retention CG5850,I_chr2L_9963013_9963451 chr2L - chr2L_9961615_9961794 chr2L_9961614_9961615;chr2L_9961794_9961795 chr2L_9961359_9961614;chr2L_9961795_9962059 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.89 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Dredd,RI_chrX_529342_529426 chrX - chrX_529323_529426 chrX_529342_529426 chrX_529427_529526;chrX_529242_529322 16.67 NA NA 7.14 NA NA NA NA NA NA NA 15.38 NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 18.75 NA NA NA NA NA NA NA NA NA K jcn_only_AD slmb,I_chr3R_16951107_16953048 chr3R - chr3R_16946692_16946754 chr3R_16946692_16946751 chr3R_16946556_16946691;chr3R_16946755_16946941 100.00 100.00 98.75 100.00 100.00 100.00 98.95 99.15 100.00 100.00 100.00 100.00 100.00 98.08 98.84 100.00 100.00 100.00 98.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.55 100.00 K intron_retention Rpb4 chr3R - chr3R_14079178_14081038 chr3R_14079177_14079178;chr3R_14081038_14081039 chr3R_14078997_14079177;chr3R_14081039_14081173 10.88 NA NA NA NA NA NA NA 20.00 NA NA 13.33 NA NA NA NA NA NA NA 28.57 NA NA 0.00 7.69 NA NA 12.50 NA NA NA NA 0.00 NA NA NA 14.29 NA NA NA NA NA 10.00 NA NA NA 0.00 NA NA 15.00 11.76 12.50 NA NA NA NA 0.00 6.67 5.00 K jcn_only_AA CG32626 chrX - chrX_13727056_13728847;chrX_13727065_13728847 chrX_13728240_13728847 chrX_13728848_13729182 0.88 0.00 0.00 2.20 1.01 2.33 0.00 0.50 0.74 0.99 0.96 0.59 1.22 0.99 2.22 0.00 0.00 1.90 0.00 3.95 0.88 0.51 1.43 1.01 2.27 1.37 1.36 0.00 2.56 0.85 0.00 1.75 0.00 2.79 0.00 0.77 0.38 0.78 1.13 1.18 1.27 0.88 2.20 1.27 0.00 0.94 0.00 0.00 0.55 0.30 1.76 2.63 0.00 0.00 0.88 1.55 0.00 3.39 K cassette cmet chr2L - chr2L_11262561_11262818 chr2L_11262561_11262616;chr2L_11262752_11262818 chr2L_11262617_11262751 chr2L_11262506_11262560;chr2L_11262819_11266557 100.00 97.50 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 97.73 98.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA REI_chr3R_10392729_10393060,CG8066,RI_chr3R_10394291_10394385,I_chr3R_10394322_10394381,RI_chr3R_10400799_10401492 chr3R - chr3R_10394291_10394385 chr3R_10394322_10394385 chr3R_10394386_10394481;chr3R_10394222_10394290 99.55 99.61 99.66 99.38 98.80 100.00 98.94 100.00 99.63 100.00 99.22 99.60 99.55 100.00 98.68 99.10 100.00 99.68 99.49 99.45 99.67 99.65 99.51 99.26 98.53 99.19 99.33 99.58 98.12 100.00 99.26 99.03 99.87 99.69 99.62 99.56 99.62 99.08 99.40 100.00 99.50 100.00 99.39 100.00 99.71 99.82 99.50 98.60 99.78 99.21 100.00 99.55 99.44 99.36 99.68 99.25 99.24 98.80 K intron_retention I_chrX_2066779_2066838,Cyp4d2,E_chrX_2071218_2072285,Cyp4ae1,pn chrX + chrX_2072314_2072369 chrX_2072313_2072314;chrX_2072369_2072370 chrX_2072286_2072313;chrX_2072370_2072385 63.34 NA NA 66.67 NA NA 69.23 NA 66.67 NA NA 50.00 NA NA NA 57.14 NA NA NA NA NA 55.00 77.78 NA NA NA NA NA NA NA 75.00 NA NA NA NA NA 60.00 NA NA 66.67 46.15 50.00 NA NA NA NA NA 91.67 50.00 NA NA NA NA NA NA NA NA NA K intron_retention Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824086_11825619 chr2R_11824085_11824086;chr2R_11825619_11825620 chr2R_11823989_11824085;chr2R_11825620_11825772 88.89 91.67 NA 70.97 NA NA 66.67 90.91 94.74 38.46 66.67 89.66 73.68 90.00 75.00 92.86 87.50 NA 90.00 78.26 88.89 100.00 89.47 69.23 75.00 NA 93.33 63.16 91.67 80.00 NA 93.33 89.47 88.89 100.00 100.00 76.92 80.00 80.95 74.07 88.89 86.67 NA 93.75 69.23 92.31 93.33 92.86 78.95 77.78 93.75 88.89 80.00 69.23 87.50 100.00 76.47 100.00 K jcn_only_AD Chc,RI_chrX_15728405_15729273,I_chrX_15728405_15729401,I_chrX_15728946_15729357 chrX - chrX_15728405_15729370;chrX_15728405_15729476;chrX_15728405_15729357;chrX_15728405_15729319 chrX_15728405_15729260 chrX_15728305_15728404;chrX_15729477_15729501 0.32 0.00 0.00 0.78 1.72 0.82 0.98 0.50 1.17 2.38 0.00 0.57 0.00 0.54 0.00 0.00 1.42 0.00 0.42 0.80 0.00 1.10 0.00 0.74 0.00 0.68 0.75 0.00 0.00 0.91 0.00 0.00 0.00 1.94 0.75 0.00 2.20 0.00 0.00 0.53 0.00 0.61 0.57 1.47 NA 1.22 2.35 0.92 0.22 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG34394,I_chr2L_3365674_3365965 chr2L - chr2L_3363763_3363826 chr2L_3363762_3363763;chr2L_3363826_3363827 chr2L_3363510_3363762;chr2L_3363827_3364644 0.00 0.00 0.00 3.85 NA NA 0.00 2.38 4.76 0.00 0.00 0.00 0.00 0.00 0.00 7.41 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 K alternative_last_exon scro chr3LHet + chr3LHet_211841_224236 chr3LHet_211841_217367 chr3LHet_224237_224332 chr3LHet_217368_217666 chr3LHet_211793_211840 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA K alternative_acceptor R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083687_8089393 chr2L_8083687_8089184 chr2L_8083422_8083686;chr2L_8089394_8089493 100.00 100.00 100.00 92.86 NA 100.00 94.59 100.00 100.00 100.00 85.71 100.00 94.74 100.00 85.71 100.00 92.86 100.00 93.33 94.12 NA 100.00 100.00 100.00 100.00 100.00 90.00 100.00 88.89 85.71 88.89 100.00 100.00 95.65 87.50 100.00 85.71 100.00 100.00 100.00 92.86 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 90.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 K alternative_donor CG11360,noncoding_20761,I_chr4_701221_705206,I_chr4_705000_705206 chr4 + chr4_691793_701065;chr4_692243_701065 chr4_692014_701065 chr4_701066_701220;chr4_691790_691792 63.16 66.67 66.67 33.33 25.00 50.00 66.67 58.82 63.16 25.00 40.00 72.73 66.67 54.55 75.00 61.11 50.00 50.00 76.92 68.18 75.00 71.43 53.85 66.67 NA 55.56 75.00 33.33 64.29 75.00 53.85 NA 42.86 66.67 60.00 69.23 57.14 71.43 NA 64.29 NA 50.00 60.00 71.43 NA 50.00 63.64 62.50 66.67 NA 54.55 71.43 62.50 66.67 58.33 66.67 NA NA K intron_retention I_chr3R_8822346_8822403,CG7518 chr3R + chr3R_8825247_8825304 chr3R_8825246_8825247;chr3R_8825304_8825305 chr3R_8825163_8825246;chr3R_8825305_8825382 7.00 2.27 3.92 7.14 0.00 3.70 8.86 5.62 5.00 9.09 6.67 6.98 20.00 2.56 10.42 7.69 6.90 7.32 5.26 12.20 0.00 6.12 5.68 10.61 11.63 7.84 9.80 NA 0.00 11.76 24.56 NA 7.14 7.25 0.00 5.13 1.27 5.88 3.95 7.55 5.56 3.66 0.00 5.26 25.00 7.41 10.34 0.00 7.61 0.00 6.45 15.15 20.00 NA 7.02 7.69 32.00 42.86 K alternative_donor fws,CG6453 chr2L - chr2L_17480920_17480968;chr2L_17480920_17481149;chr2L_17480920_17480983 chr2L_17480920_17480972 chr2L_17480825_17480919;chr2L_17481150_17481199 33.33 33.33 40.00 37.50 16.67 33.33 33.33 33.33 35.71 NA 20.00 33.33 50.00 40.00 50.00 25.00 33.33 25.00 42.86 36.36 33.33 33.33 NA NA NA 40.00 NA NA NA NA 40.00 0.00 33.33 30.00 NA NA 50.00 NA NA 33.33 NA 36.36 NA NA 25.00 NA NA 20.00 20.00 25.00 NA NA NA NA 0.00 NA 20.00 0.00 K intron_retention sol chrX + chrX_21224460_21225120 chrX_21224459_21224460;chrX_21225120_21225121 chrX_21224441_21224459;chrX_21225121_21225440 93.75 85.29 91.18 69.39 93.75 95.65 100.00 100.00 98.57 76.47 100.00 91.67 94.12 96.67 97.30 96.88 95.65 95.65 96.15 90.28 93.10 76.36 93.44 88.89 87.10 100.00 100.00 93.75 93.94 82.76 92.00 90.48 84.31 95.00 87.10 89.19 88.06 96.43 90.38 91.84 92.86 93.33 96.15 93.94 96.30 95.45 100.00 88.89 98.31 82.35 90.24 94.74 93.75 84.00 93.18 96.88 95.45 100.00 K cassette RpL13A,I_chr3R_1450243_1451235,EI_chr3R_1450853_1451054 chr3R + chr3R_1450243_1451235 chr3R_1450243_1450611;chr3R_1450853_1451235 chr3R_1450612_1450852 chr3R_1450148_1450242;chr3R_1451236_1451335 100.00 100.00 100.00 99.99 100.00 99.98 100.00 99.99 100.00 100.00 99.98 99.98 99.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.99 100.00 100.00 100.00 99.98 100.00 100.00 99.99 100.00 100.00 100.00 100.00 99.99 100.00 100.00 100.00 100.00 99.99 100.00 100.00 99.99 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.99 100.00 K alternative_last_exon Hcf,I_chr4_391984_392875 chr4 + chr4_387389_391716 chr4_387389_390132 chr4_391717_391983 chr4_390133_390370 chr4_386486_387388 70.37 64.29 76.67 34.62 40.91 52.00 61.02 71.43 59.46 78.57 81.25 48.48 53.57 69.70 59.38 60.94 64.52 53.33 60.00 59.09 87.50 80.95 72.73 74.07 71.43 47.22 56.67 58.82 61.11 75.00 67.39 73.33 85.00 61.11 84.21 63.64 70.37 73.33 62.07 78.26 79.17 66.67 75.86 80.00 55.56 76.00 82.35 76.00 71.01 76.00 76.92 74.07 54.17 81.25 78.05 70.37 70.37 68.97 K cassette CG10777,noncoding_22445 chrX - chrX_7822590_7824906 chrX_7822590_7822826;chrX_7824349_7824906 chrX_7822827_7824348 chrX_7822518_7822589;chrX_7824907_7825393 100.00 100.00 98.53 95.65 100.00 100.00 100.00 99.03 99.37 100.00 98.21 99.22 98.18 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 91.84 99.11 100.00 98.08 100.00 100.00 100.00 97.78 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.82 100.00 99.27 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.82 100.00 100.00 100.00 K intron_retention cmet chr2L - chr2L_11261455_11261510 chr2L_11261454_11261455;chr2L_11261510_11261511 chr2L_11260848_11261454;chr2L_11261511_11262004 0.00 0.00 0.00 9.43 0.00 0.00 0.00 1.54 0.00 NA 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 11.76 2.63 0.00 NA 13.33 0.00 0.00 NA 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 13.04 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD RpL9,I_chr2L_11003762_11003828 chr2L - chr2L_11003762_11004005 chr2L_11003762_11003828 chr2L_11003662_11003761;chr2L_11004006_11004055 0.00 0.00 0.01 0.01 0.00 0.00 0.01 0.02 0.00 0.00 0.00 0.02 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.01 0.02 0.02 0.02 0.00 0.02 0.04 0.00 0.00 0.02 0.02 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 0.02 0.02 0.01 0.02 0.02 0.02 0.04 0.04 0.02 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.02 0.01 0.00 K intron_retention CG13472,I_chr3L_14783173_14784369 chr3L + chr3L_14779982_14780033 chr3L_14779981_14779982;chr3L_14780033_14780034 chr3L_14779915_14779981;chr3L_14780034_14780118 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 10.34 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention REI_chrX_20294004_20294672,CG15456 chrX - chrX_20297935_20297991 chrX_20297934_20297935;chrX_20297991_20297992 chrX_20297582_20297934;chrX_20297992_20298081 8.39 NA NA NA NA NA NA NA 7.69 NA NA 6.67 NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA NA NA NA 5.88 NA NA NA NA NA 14.29 9.09 NA 12.50 NA NA 5.56 30.77 NA 6.67 30.77 NA NA NA NA NA NA NA NA 5.56 K alternative_donor Cyp6u1,RI_chr2R_2860235_2860315 chr2R - chr2R_2860235_2860315 chr2R_2860235_2860292 chr2R_2860135_2860234;chr2R_2860316_2860335 98.15 86.67 100.00 95.00 100.00 100.00 87.50 100.00 100.00 NA 100.00 95.45 90.00 100.00 92.31 94.12 92.31 100.00 92.86 96.30 93.75 90.91 100.00 100.00 100.00 85.71 91.67 100.00 NA 100.00 93.75 92.86 91.67 95.65 100.00 91.67 100.00 100.00 100.00 100.00 91.67 95.00 91.67 100.00 100.00 93.33 100.00 NA 100.00 100.00 95.45 100.00 90.91 100.00 92.31 100.00 94.12 100.00 K intron_retention CG14408 chrX - chrX_14724541_14725124 chrX_14724540_14724541;chrX_14725124_14725125 chrX_14724466_14724540;chrX_14725125_14725543 0.00 0.00 NA NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA 0.00 3.85 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 8.70 NA NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 K intron_retention grau chr2R - chr2R_16898050_16898111 chr2R_16898049_16898050;chr2R_16898111_16898112 chr2R_16897674_16898049;chr2R_16898112_16898321 0.00 0.00 0.00 4.44 0.00 0.00 6.38 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 13.51 0.00 5.26 0.00 0.00 5.00 4.76 0.00 0.00 5.71 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG6043,I_chr2L_13267973_13268086 chr2L + chr2L_13274377_13274690;chr2L_13274377_13274642 chr2L_13274377_13274651 chr2L_13274310_13274376;chr2L_13274691_13274770 11.11 NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 37.50 NA NA NA NA NA 11.11 NA NA NA 18.18 NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA 20.00 NA 0.00 0.00 NA NA NA NA NA NA NA K jcn_only_AD CG2818 chr2L + chr2L_3714584_3714646;chr2L_3714574_3714646 chr2L_3714492_3714646 chr2L_3714647_3716104;chr2L_3714467_3714491 60.44 60.87 54.55 53.85 NA NA 43.33 30.43 54.35 NA NA 73.08 NA 60.00 54.55 65.22 NA NA 34.78 65.62 NA 86.27 76.32 55.17 81.82 NA 66.67 60.00 NA 75.00 20.00 NA 85.19 46.88 NA NA 65.62 78.57 58.33 55.17 NA 64.00 NA 63.64 NA NA NA NA 48.65 NA 67.50 77.27 NA NA 45.83 NA 56.00 79.17 K intron_retention CG14408,I_chrX_14725709_14725773 chrX - chrX_14725700_14725773 chrX_14725699_14725700;chrX_14725773_14725774 chrX_14725637_14725699;chrX_14725774_14725873 6.90 10.53 5.26 0.00 0.00 NA 11.11 0.00 9.30 0.00 9.52 6.67 15.38 0.00 3.23 4.76 NA NA 11.76 15.38 0.00 8.33 5.56 10.71 NA NA 5.00 0.00 10.53 16.67 11.54 17.65 NA 7.69 0.00 25.00 13.33 7.14 0.00 12.20 NA 6.67 18.75 12.00 5.56 0.00 7.14 5.26 9.09 0.00 0.00 0.00 6.25 12.50 7.41 NA 0.00 NA K intron_retention CG11170,I_chr2R_18066002_18066122,RI_chr2R_18066002_18070327 chr2R - chr2R_18066002_18070267 chr2R_18066001_18066002;chr2R_18070267_18070268 chr2R_18065902_18066001;chr2R_18070268_18070350 12.41 NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG8412,I_chr3R_5583152_5583200 chr3R + chr3R_5583152_5583217 chr3R_5583152_5583200 chr3R_5583052_5583151;chr3R_5583218_5583300 2.94 4.17 2.44 0.00 3.45 5.56 5.41 2.33 0.00 4.00 0.00 5.77 0.00 0.00 4.88 2.86 0.00 5.71 6.45 3.41 0.00 10.71 11.11 2.56 0.00 0.00 6.45 13.64 0.00 5.88 4.88 4.76 2.44 2.08 0.00 3.03 3.64 3.70 4.65 1.82 2.94 2.27 0.00 3.03 6.67 0.00 0.00 6.06 6.90 0.00 2.27 3.33 NA 0.00 0.00 0.00 6.45 NA K jcn_only_AD CG17471,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1216718_1216813 chr4_1216718_1216790 chr4_1216618_1216717;chr4_1216814_1216814 93.44 92.00 NA 90.70 NA 90.00 97.67 95.31 94.74 NA NA 95.56 93.55 86.84 NA 92.31 NA NA 80.65 93.33 NA NA 94.44 NA NA NA NA NA NA NA 83.87 NA NA 95.24 NA NA NA NA NA 100.00 NA 92.00 95.65 NA NA 91.30 NA 95.45 87.93 NA NA NA NA NA 87.50 95.00 NA 95.00 K alternative_acceptor CG12024,REI_chr3L_1857404_1857509 chr3L + chr3L_1857404_1857464;chr3L_1857404_1857509 chr3L_1857404_1857512 chr3L_1857304_1857403;chr3L_1857513_1857609 54.84 51.85 62.50 70.97 53.57 73.91 57.14 44.00 52.46 57.50 52.17 56.14 50.00 50.00 58.06 42.86 50.00 68.00 56.25 53.45 60.87 43.18 69.09 64.71 50.00 61.90 52.08 64.71 56.00 64.81 66.67 57.14 54.93 54.55 48.15 41.03 64.20 53.06 53.85 60.00 59.46 54.00 54.55 56.00 55.56 50.00 57.69 42.86 52.63 52.08 61.22 46.67 67.44 52.94 45.83 54.84 58.93 48.94 K jcn_only_AD CG10365,I_chr3R_19549381_19554106,I_chr3R_19554176_19554388 chr3R + chr3R_19549425_19554388;chr3R_19549452_19554388 chr3R_19549381_19554388 chr3R_19554389_19554488;chr3R_19549281_19549380 92.00 90.00 89.19 95.24 95.45 96.30 89.13 96.67 91.53 100.00 86.96 88.57 NA 95.83 91.67 90.48 100.00 95.65 94.74 84.91 91.30 NA 95.74 100.00 92.31 97.22 100.00 NA 83.33 95.24 88.24 86.36 95.12 90.91 100.00 NA 90.91 100.00 97.30 90.48 88.37 89.23 91.67 86.11 91.89 84.21 94.59 92.96 87.93 92.00 97.37 100.00 NA 97.30 91.89 96.77 NA 78.57 K alternative_donor Chc,RI_chrX_15728405_15729273,I_chrX_15728405_15729401,I_chrX_15728946_15729357 chrX - chrX_15728405_15728738 chrX_15728405_15728664 chrX_15728305_15728404;chrX_15728739_15728742 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1666219_1670203;chr2R_1666219_1670219;chr2R_1666219_1669803;chr2R_1666219_1670325 chr2R_1666219_1670281 chr2R_1666119_1666218;chr2R_1670326_1670328 25.00 29.17 22.22 26.83 25.00 20.00 20.83 26.25 26.92 29.41 37.50 23.81 32.50 21.88 20.51 24.59 20.51 25.00 17.95 24.21 21.62 25.00 33.33 21.05 21.05 17.86 27.27 25.00 28.00 20.00 20.41 23.53 26.09 22.50 16.00 4.17 30.77 33.33 21.05 32.65 23.81 31.65 26.47 34.38 23.53 25.00 20.00 21.67 25.00 45.45 26.09 28.57 25.00 20.00 27.45 27.27 31.25 30.36 K intron_retention CG7945,RI_chr3L_15515681_15516932,RI_chr3L_15516824_15516932 chr3L - chr3L_15515603_15515659 chr3L_15515602_15515603;chr3L_15515659_15515660 chr3L_15515581_15515602;chr3L_15515660_15515680 1.67 0.00 0.00 1.10 1.67 0.00 5.33 0.00 4.24 9.09 3.92 2.13 1.59 0.00 0.00 0.00 2.44 3.03 0.00 1.69 3.12 12.96 6.90 0.00 7.14 10.53 7.14 6.52 23.08 2.00 0.00 0.00 0.00 1.79 0.00 3.92 1.59 0.00 2.90 0.79 6.45 0.90 0.00 0.00 2.78 4.95 0.00 0.00 2.75 4.35 4.82 0.00 0.00 3.85 0.00 0.00 3.12 0.00 K jcn_only_AA CG5646,I_chr3R_23386250_23386484,I_chr3R_23386287_23386484 chr3R - chr3R_23386250_23386484;chr3R_23386237_23386484;chr3R_23386287_23386484 chr3R_23386220_23386484 chr3R_23386485_23386584;chr3R_23386187_23386219 5.88 18.52 3.45 5.88 0.00 7.14 4.17 0.00 5.48 NA 5.00 12.50 NA 3.57 12.50 20.00 25.00 10.00 8.57 6.35 3.57 8.00 3.57 4.76 0.00 NA 14.04 14.00 5.26 9.38 10.45 4.00 14.29 4.35 11.63 3.85 2.99 0.00 21.95 8.51 0.00 5.26 0.00 5.26 3.45 9.80 5.41 8.33 13.95 15.15 17.39 10.00 14.29 5.88 9.52 2.94 3.85 NA K alternative_donor myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_716066_716322;chr4_716066_716613 chr4_716066_716482 chr4_716053_716065;chr4_716614_716661 10.00 0.00 0.00 13.04 NA 14.29 18.18 3.70 8.57 NA 0.00 7.69 25.00 10.53 33.33 10.87 0.00 20.00 21.43 14.29 12.50 NA 14.29 0.00 20.00 0.00 NA NA NA 0.00 10.00 NA NA 12.50 20.00 NA 0.00 NA NA 14.29 NA 10.53 30.77 0.00 NA NA 0.00 0.00 5.56 NA 10.00 0.00 NA NA 0.00 NA NA NA K multi_cassette pho,RI_chr4_1193657_1194431,I_chr4_1193830_1194784,EI_chr4_1193830_1195360,RI_chr4_1193830_1195384,I_chr4_1193830_1201673 chr4 - chr4_1193830_1201673 chr4_1193830_1194431;chr4_1194724_1194784;chr4_1195555_1195607;chr4_1195750_1201673 chr4_1194432_1194723;chr4_1194785_1195554;chr4_1195608_1195749 chr4_1193730_1193829;chr4_1201674_1201773 100.00 100.00 100.00 100.00 87.50 90.00 96.30 100.00 97.22 100.00 100.00 95.24 94.12 100.00 100.00 94.12 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 92.31 100.00 K intron_retention Prosbeta2 chr3L + chr3L_14993230_14993299 chr3L_14993229_14993230;chr3L_14993299_14993300 chr3L_14993079_14993229;chr3L_14993300_14993479 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14442,I_chrX_6586147_6586435 chrX - chrX_6583646_6583704 chrX_6583645_6583646;chrX_6583704_6583705 chrX_6583354_6583645;chrX_6583705_6585387 87.50 91.67 87.50 100.00 95.24 90.91 91.11 93.18 87.01 66.67 75.00 97.73 72.73 86.67 92.59 89.47 87.10 100.00 97.30 80.00 86.36 56.25 96.15 73.91 91.67 90.91 87.50 100.00 80.00 80.00 85.19 89.47 90.00 90.38 81.25 100.00 72.00 69.23 73.33 69.44 76.67 89.58 96.30 91.67 80.95 93.55 65.52 78.95 97.83 83.33 78.12 74.07 90.00 72.00 93.94 84.00 74.07 95.65 K jcn_only_AD larp,F_chr3R_24151542_24153876,I_chr3R_24160430_24160932,I_chr3R_24160430_24160971,RI_chr3R_24160430_24161527 chr3R - chr3R_24160430_24161729;chr3R_24160430_24160932;chr3R_24160430_24160971;chr3R_24160430_24160975;chr3R_24160430_24160979;chr3R_24160430_24161939 chr3R_24160430_24161527 chr3R_24160330_24160429;chr3R_24161940_24162125 1.40 0.00 0.67 1.25 0.95 0.99 0.00 0.35 0.31 2.25 2.30 0.83 1.61 0.00 1.52 2.65 0.69 1.55 0.00 0.00 0.93 3.68 2.30 0.72 0.00 0.00 2.55 2.04 5.10 5.04 1.40 0.00 1.91 0.84 0.00 4.20 3.52 2.83 0.00 0.00 1.23 1.71 1.52 1.47 4.55 0.00 3.33 0.58 1.36 1.92 2.96 2.06 4.04 3.85 1.70 1.59 0.00 0.67 K intron_retention CG14646 chr3R + chr3R_216341_216399 chr3R_216340_216341;chr3R_216399_216400 chr3R_216226_216340;chr3R_216400_216431 98.28 98.18 97.92 100.00 97.62 97.06 98.04 97.14 98.95 100.00 97.83 98.61 100.00 100.00 100.00 97.87 97.14 95.12 97.83 99.04 100.00 98.00 95.16 100.00 96.15 100.00 100.00 100.00 98.08 98.36 97.67 100.00 98.68 98.28 96.97 100.00 100.00 100.00 98.36 98.68 97.92 97.62 100.00 100.00 98.04 98.53 97.73 98.31 98.61 95.83 96.49 97.44 98.21 97.44 100.00 98.11 96.92 98.85 K jcn_only_AA CG32708,RI_chrX_8980352_8980400 chrX + chrX_8980352_8980429 chrX_8980352_8980400 chrX_8980252_8980351;chrX_8980430_8980500 2.08 0.00 3.03 3.85 0.00 3.57 3.03 2.94 6.78 3.85 0.00 0.00 0.00 3.85 0.00 2.70 NA NA 0.00 1.45 0.00 2.27 0.00 5.17 0.00 NA 3.03 0.00 8.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 2.33 0.00 2.13 5.41 5.71 0.00 NA 3.23 0.00 0.00 0.00 6.90 2.13 2.08 0.00 8.33 3.57 0.00 5.56 3.92 1.92 4.65 K jcn_only_AD None chrU - chrU_4029374_4029489;chrU_4029374_4029436 chrU_4029374_4029432 2.26 1.44 2.33 1.87 1.91 3.28 0.00 2.03 2.10 2.79 0.81 2.87 1.05 2.97 1.96 1.02 0.00 1.60 2.31 2.68 2.70 7.34 2.36 3.28 0.81 0.98 0.55 3.12 8.72 3.28 2.26 3.16 3.54 1.93 0.00 1.44 1.99 4.95 4.37 4.26 2.45 1.30 0.00 2.67 1.65 5.10 2.70 5.24 2.71 1.50 1.36 2.33 2.76 3.45 1.35 1.50 1.99 1.47 N intron_retention Inos,I_chr2R_3344353_3345211,noncoding_4874 chr2R - chr2R_3343582_3346113 chr2R_3343581_3343582;chr2R_3346113_3346114 chr2R_3343339_3343581;chr2R_3346114_3346215 100.00 NA NA 36.36 NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 52.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA 100.00 NA K multi_cassette Rpb4 chr3R - chr3R_14079178_14081038 chr3R_14079178_14079247;chr3R_14079515_14079574;chr3R_14080039_14080096;chr3R_14080959_14081038 chr3R_14079248_14079514;chr3R_14079575_14080038;chr3R_14080097_14080958 chr3R_14078997_14079177;chr3R_14081039_14081173 37.50 44.44 30.77 40.00 42.86 50.00 77.78 35.29 40.00 42.86 50.00 35.00 33.33 37.50 36.36 43.75 30.00 36.36 80.00 52.38 36.36 60.00 27.27 33.33 30.00 36.36 30.00 50.00 60.00 41.67 61.11 30.43 40.00 43.75 30.77 33.33 70.00 50.00 50.00 40.00 46.15 30.77 30.00 55.56 69.23 24.00 33.33 56.25 32.00 25.00 36.36 40.00 26.67 33.33 40.00 21.74 30.00 34.48 K jcn_only_AD RpL28,RI_chr3L_3221710_3221877,I_chr3L_3221982_3222744,snoRNA:Or-CD11c,snoRNA:Or-CD11b,snoRNA:Or-CD11a,I_chr3L_3222575_3222787 chr3L - chr3L_3221982_3222787;chr3L_3221982_3222152;chr3L_3221982_3222574;chr3L_3221982_3222365;chr3L_3221982_3222847 chr3L_3221982_3222926 chr3L_3221882_3221981;chr3L_3222927_3222958 71.35 64.91 87.68 93.62 86.79 87.17 57.09 93.02 68.82 63.29 83.64 66.19 75.36 61.31 91.15 65.75 87.31 86.63 92.02 85.97 84.03 71.90 34.03 24.54 18.33 77.28 23.14 20.72 71.35 66.67 80.55 86.13 90.38 92.67 52.74 48.90 27.42 30.69 24.60 63.93 82.14 90.44 90.98 51.97 87.89 69.34 28.10 77.43 87.50 30.47 18.70 33.04 79.66 16.51 88.63 29.31 38.65 88.57 K intron_retention CG9941 chrX - chrX_13613379_13613443 chrX_13613378_13613379;chrX_13613443_13613444 chrX_13612738_13613378;chrX_13613444_13614384 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.60 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 6.67 2.11 0.00 3.08 0.00 1.09 6.35 7.96 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.78 0.00 0.00 0.00 1.95 0.53 0.00 0.00 0.86 0.00 0.85 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6700 chr2L - chr2L_10839741_10839800 chr2L_10839740_10839741;chr2L_10839800_10839801 chr2L_10839533_10839740;chr2L_10839801_10840005 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12914849_12916177;chr2R_12914834_12916177;chr2R_12914941_12916177 chr2R_12914845_12916177 chr2R_12916178_12916526;chr2R_12914830_12914833 70.00 NA 85.71 71.43 NA 57.14 72.22 72.22 64.00 NA NA 63.64 66.67 80.00 55.56 71.43 83.33 NA 75.00 NA NA 64.71 70.00 NA 85.71 NA NA NA 54.55 NA 83.33 NA 66.67 88.89 70.00 66.67 NA NA NA 63.64 NA 69.23 77.78 87.50 NA 44.44 NA 65.22 75.00 NA 77.78 NA NA NA 70.00 NA NA 63.64 K intron_retention Pax,RI_chr2L_19401373_19401448,I_chr2L_19401373_19401523,RI_chr2L_19401373_19409403,snmRNA:359,I_chr2L_19404678_19404749,RI_chr2L_19404683_19426205,RI_chr2L_19404823_19409403 chr2L - chr2L_19401373_19401448 chr2L_19401372_19401373;chr2L_19401448_19401449 chr2L_19401273_19401372;chr2L_19401449_19401548 90.00 NA NA 70.00 NA NA 66.67 NA 91.67 NA NA 91.67 NA NA NA 100.00 NA NA NA 50.00 NA 60.00 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 70.00 NA NA 90.91 NA 100.00 NA 91.67 NA NA 83.33 NA NA NA NA NA NA NA NA NA K intron_retention Art4 chr3R - chr3R_5811138_5811199 chr3R_5811137_5811138;chr3R_5811199_5811200 chr3R_5810244_5811137;chr3R_5811200_5811777 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.12 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Adf1,CG15908_CG9410 chr2R + chr2R_2549954_2550129 chr2R_2549954_2550073 chr2R_2549797_2549953;chr2R_2550130_2550262 100.00 96.15 96.67 97.78 100.00 100.00 100.00 100.00 100.00 100.00 94.44 97.92 96.15 95.65 100.00 97.83 100.00 100.00 96.00 100.00 100.00 100.00 97.30 100.00 100.00 96.15 100.00 85.71 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 100.00 100.00 97.44 95.00 94.74 100.00 100.00 100.00 95.65 100.00 100.00 92.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 K intron_retention Pi4KIIalpha,I_chr3R_1385525_1386498,psnoRNA:Pl4KIIalpha-a chr3R - chr3R_1385525_1385796 chr3R_1385524_1385525;chr3R_1385796_1385797 chr3R_1385425_1385524;chr3R_1385797_1385915 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG32795,RI_chrX_2677454_2677799,I_chrX_2677459_2682526,I_chrX_2677729_2677799,I_chrX_2679163_2681784 chrX - chrX_2677459_2677799 chrX_2677729_2677799 chrX_2677800_2677899;chrX_2677453_2677458 0.00 0.00 NA NA NA 0.00 0.00 0.00 6.06 NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 NA NA NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 6.45 3.57 0.00 0.00 2.04 NA 4.76 0.00 0.00 4.76 0.00 4.88 0.00 3.85 NA 0.00 0.00 3.33 0.00 0.00 0.00 N jcn_only_AA SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_17031773_17033340 chr3R_17031773_17031841 chr3R_17031724_17031772;chr3R_17033341_17033389 50.00 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K multi_cassette CG17834 chr2L + chr2L_8536080_8537230 chr2L_8536080_8536206;chr2L_8536269_8536893;chr2L_8537072_8537230 chr2L_8536207_8536268;chr2L_8536894_8537071 chr2L_8535918_8536079;chr2L_8537231_8537463 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD l(2)05714,RI_chr2L_4970785_4971075,CRE_chr2L_4970785_4971082,I_chr2L_4970785_4973718,RI_chr2L_4971343_4973718 chr2L - chr2L_4970785_4971086;chr2L_4970785_4973718 chr2L_4970785_4971053 chr2L_4970685_4970784;chr2L_4973719_4973787 10.81 8.82 13.33 8.51 0.00 19.05 9.30 10.20 10.81 NA 7.69 10.29 7.14 3.23 9.76 8.33 NA 21.05 12.90 13.51 18.52 11.54 5.66 6.98 7.69 8.82 10.81 NA 18.18 12.12 8.00 32.26 6.06 21.28 7.14 15.38 10.42 19.44 2.33 25.00 12.73 13.33 20.00 15.91 12.50 20.51 9.09 20.00 12.50 9.09 14.58 11.54 8.00 10.34 18.18 15.00 2.53 6.67 K jcn_only_AD CkIalpha,I_chrX_12548371_12549203,I_chrX_12548704_12549203,I_chrX_12548772_12549203 chrX + chrX_12548202_12549203;chrX_12547919_12549203 chrX_12548131_12549203 chrX_12549204_12549210;chrX_12547852_12547918 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Elongin-C,I_chr2R_15332885_15332943,I_chr2R_15332885_15333223,I_chr2R_15332885_15333260,I_chr2R_15332885_15333452,I_chr2R_15333309_15333432,I_chr2R_15336252_15338966 chr2R - chr2R_15332885_15333452 chr2R_15332885_15333432 chr2R_15332785_15332884;chr2R_15333453_15333532 100.00 100.00 100.00 99.75 100.00 100.00 100.00 100.00 100.00 100.00 99.51 99.57 100.00 100.00 100.00 100.00 100.00 99.61 99.64 99.82 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.67 100.00 99.43 100.00 100.00 100.00 100.00 99.58 99.25 99.81 99.74 99.79 100.00 100.00 99.36 99.78 100.00 99.63 99.53 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG7523 chr3R - chr3R_13495349_13495787 chr3R_13495349_13495729 chr3R_13494947_13495348;chr3R_13495788_13496064 0.69 0.54 0.00 1.42 0.88 0.00 1.69 2.19 1.15 2.33 4.82 1.49 1.18 0.00 0.00 0.98 0.00 1.89 1.12 0.43 1.19 0.50 0.44 0.85 0.00 0.00 0.53 2.56 0.00 1.34 5.95 1.82 0.61 0.00 0.00 0.00 0.74 0.53 0.40 0.84 0.76 0.78 0.00 0.54 0.95 0.93 1.35 1.94 0.53 0.55 1.61 0.91 0.49 0.58 0.00 0.55 0.69 0.55 K cassette noncoding_23420,hep chrX - chrX_12977132_12979628 chrX_12977132_12978277;chrX_12978604_12979628 chrX_12978278_12978603 chrX_12976641_12977131;chrX_12979629_12979784 73.08 80.00 80.77 91.84 76.92 70.59 84.91 88.89 80.72 58.33 61.11 84.31 85.71 79.41 66.67 88.68 83.33 70.00 91.30 81.25 71.43 44.00 61.54 74.19 68.42 76.47 76.19 38.10 52.38 66.67 82.76 81.82 92.31 86.54 57.14 69.57 54.55 57.14 50.00 61.11 92.86 71.70 95.83 71.43 66.67 75.00 66.67 84.62 75.81 73.08 60.47 75.00 68.18 46.67 70.83 70.59 67.86 88.00 K alternative_acceptor casp,EI_chr2R_11914764_11914841 chr2R - chr2R_11914769_11914841;chr2R_11914764_11914841 chr2R_11914784_11914841 chr2R_11914842_11914941;chr2R_11914664_11914763 74.29 81.82 67.74 71.05 86.36 85.19 65.79 70.59 78.00 66.67 60.00 73.81 79.17 80.00 80.77 78.79 66.67 76.92 84.21 77.78 83.33 80.00 63.64 73.91 73.91 72.73 81.25 94.44 60.71 68.75 74.29 68.18 85.29 74.29 72.73 71.43 73.33 71.43 76.92 75.00 67.65 78.43 70.59 69.70 86.96 78.79 71.43 62.26 71.43 83.33 78.26 68.75 75.00 71.43 80.65 73.91 80.00 78.72 K alternative_acceptor hook,CG31800 chr2L - chr2L_19031229_19031292 chr2L_19031242_19031292 chr2L_19031293_19031361;chr2L_19031164_19031228 98.65 100.00 100.00 98.41 100.00 100.00 100.00 100.00 96.74 100.00 97.56 98.51 100.00 100.00 97.14 98.11 96.88 100.00 97.78 98.78 100.00 97.22 100.00 97.44 96.77 97.67 98.00 100.00 98.08 97.06 97.78 96.15 100.00 98.18 100.00 96.00 97.73 97.44 98.31 100.00 100.00 98.65 100.00 100.00 100.00 98.44 98.55 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 98.04 98.28 97.30 K intron_retention CG42541,F_chrX_3804144_3804471,F_chrX_3805550_3805649 chrX - chrX_3804802_3804858 chrX_3804801_3804802;chrX_3804858_3804859 chrX_3804791_3804801;chrX_3804859_3805093 36.03 NA NA 35.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG3397,RI_chr3R_7818607_7818970 chr3R - chr3R_7809006_7809207 chr3R_7809005_7809006;chr3R_7809207_7809208 chr3R_7808850_7809005;chr3R_7809208_7809746 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 NA 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette skd chr3L - chr3L_20995298_20998077 chr3L_20995298_20996835;chr3L_20997286_20998077 chr3L_20996836_20997285 chr3L_20995117_20995297;chr3L_20998078_20998762 5.94 NA 6.45 18.75 NA 0.00 7.41 0.00 4.17 6.67 4.76 15.91 0.00 4.55 0.00 13.04 0.00 5.88 0.00 13.16 NA 6.00 10.71 5.56 13.33 4.35 4.35 10.00 6.12 4.26 0.00 0.00 6.45 2.63 3.85 32.00 6.67 9.09 3.57 10.42 10.53 8.82 6.67 8.00 NA 4.35 NA 3.06 3.23 NA 6.67 6.67 11.11 NA 3.23 NA NA 3.45 K intron_retention Rala chrX - chrX_3600285_3602776 chrX_3600284_3600285;chrX_3602776_3602777 chrX_3599901_3600284;chrX_3602777_3602951 28.34 23.53 36.36 19.44 NA 13.33 29.17 29.41 21.21 25.00 NA 25.81 15.38 15.38 NA 20.83 21.43 20.00 19.05 22.22 88.89 70.00 36.84 31.58 26.67 22.22 42.86 87.50 50.00 NA 36.36 50.00 38.89 20.00 NA 17.39 15.38 33.33 53.85 28.12 40.00 14.81 12.50 31.03 53.85 43.75 28.57 43.48 12.50 45.45 23.81 NA 14.81 NA 31.25 29.41 30.00 20.00 K intron_retention Chc,RI_chrX_15728405_15729273,I_chrX_15728405_15729401,I_chrX_15728946_15729357 chrX - chrX_15728405_15729476 chrX_15728404_15728405;chrX_15729476_15729477 chrX_15728305_15728404;chrX_15729477_15729501 98.59 95.83 95.83 96.49 100.00 100.00 100.00 98.59 98.65 NA 100.00 93.62 100.00 97.14 93.10 97.96 93.55 100.00 97.73 97.50 100.00 93.33 96.15 100.00 100.00 100.00 100.00 100.00 NA 93.33 93.55 NA 100.00 98.48 100.00 100.00 100.00 NA 100.00 96.00 NA 94.44 97.06 100.00 NA NA NA 90.00 98.41 100.00 93.75 100.00 NA NA 97.50 NA 100.00 NA K cassette yki chr2R - chr2R_19953837_19954685 chr2R_19953837_19954083;chr2R_19954240_19954685 chr2R_19954084_19954239 chr2R_19953784_19953836;chr2R_19954686_19954777 78.61 76.67 71.96 54.80 81.36 79.73 89.51 77.42 83.24 77.78 91.67 75.62 88.00 80.46 75.00 77.02 84.21 97.26 77.78 77.02 88.24 74.26 78.38 79.13 71.05 67.35 75.00 83.54 70.69 80.23 81.55 81.82 83.21 79.63 76.04 56.10 83.13 71.05 71.67 83.95 71.92 78.61 84.00 85.98 75.34 80.85 79.31 81.34 76.96 76.25 80.87 79.75 72.90 67.27 77.12 79.10 74.68 79.12 K intron_retention Mes2,CEF_chr3L_22939285_22939369 chr3L + chr3L_22944347_22944461 chr3L_22944346_22944347;chr3L_22944461_22944462 chr3L_22943632_22944346;chr3L_22944462_22945346 99.49 100.00 99.50 99.63 99.38 99.41 100.00 99.67 99.72 99.00 98.68 99.38 99.43 99.44 100.00 99.53 100.00 99.45 100.00 99.47 100.00 99.43 99.33 99.61 99.35 99.46 99.22 98.35 97.85 99.49 99.49 99.36 99.44 99.65 99.35 99.37 99.60 100.00 98.78 99.02 100.00 99.75 100.00 99.51 100.00 100.00 100.00 99.13 100.00 99.57 99.64 98.86 99.33 99.36 99.56 99.12 100.00 99.54 K intron_retention CG8709,I_chr2R_4027128_4027182,I_chr2R_4027682_4027747,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4027655_4027747 chr2R_4027654_4027655;chr2R_4027747_4027748 chr2R_4027582_4027654;chr2R_4027748_4027847 0.00 4.55 3.08 5.41 1.89 0.00 2.35 2.63 2.46 0.00 2.17 2.44 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.64 4.65 7.38 1.82 3.30 3.39 0.00 7.78 8.57 5.41 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.71 0.00 3.10 0.00 0.00 0.93 0.00 1.43 0.00 0.00 1.15 0.00 4.81 0.00 1.98 0.00 0.00 0.00 2.70 0.00 0.00 0.00 K jcn_only_AD CG2990 chrX + chrX_9905147_9905206 chrX_9905150_9905206 chrX_9905207_9906244;chrX_9904536_9905146 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Mbs,I_chr3L_16045251_16046108,I_chr3L_16057100_16057329 chr3L + chr3L_16070383_16073858 chr3L_16070382_16070383;chr3L_16073858_16073859 chr3L_16070292_16070382;chr3L_16073859_16074854 0.00 2.82 3.39 1.96 0.00 0.00 2.76 1.00 1.99 0.00 2.30 4.30 0.00 0.00 0.00 0.57 0.00 0.85 0.78 0.00 0.00 0.00 2.08 0.00 1.47 0.00 1.03 3.85 8.93 0.00 0.89 0.00 1.06 1.05 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.91 0.00 0.00 0.00 1.37 0.00 1.01 1.42 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.99 K alternative_acceptor Ptp69D,CG32112 chr3L + chr3L_12731804_12731874 chr3L_12731804_12731871 chr3L_12731560_12731803;chr3L_12731875_12732766 33.33 40.00 40.00 28.57 27.78 NA 40.00 35.00 31.82 NA 26.67 33.33 25.00 37.50 25.93 31.03 44.44 5.56 29.63 25.81 28.57 45.00 39.13 55.56 36.36 27.27 41.67 NA 30.77 35.71 31.58 NA NA 31.58 30.77 45.45 55.56 36.36 30.77 33.33 NA 34.21 30.00 40.00 NA 33.33 NA 37.50 35.14 16.67 33.33 35.71 NA NA 33.33 NA NA 33.33 K cassette Dystrophin chr3R + chr3R_15308374_15310761 chr3R_15308374_15309625;chr3R_15310667_15310761 chr3R_15309626_15310666 chr3R_15308286_15308373;chr3R_15310762_15310994 72.97 78.79 78.95 45.95 64.71 65.79 81.25 66.18 71.28 57.69 86.21 80.00 69.77 61.70 71.11 70.18 84.21 75.86 72.73 85.07 87.10 59.38 80.70 80.00 77.78 68.29 78.72 54.55 53.33 65.71 63.64 73.68 60.00 67.53 71.88 72.97 76.00 73.91 77.78 73.33 47.83 74.68 76.47 67.39 45.83 73.33 53.85 51.72 73.17 94.12 82.00 62.07 88.24 73.33 61.40 75.00 87.50 65.38 K intron_retention msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2567815_2579454 chr3L_2567814_2567815;chr3L_2579454_2579455 chr3L_2567370_2567814;chr3L_2579455_2579520 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Hr39,I_chr2L_21256047_21256260 chr2L + chr2L_21256047_21256945 chr2L_21256047_21256260 chr2L_21255947_21256046;chr2L_21256946_21257048 3.74 3.45 0.00 11.54 5.56 7.69 3.03 4.65 5.26 0.00 10.53 6.98 6.25 0.00 3.85 3.03 3.57 5.56 4.55 2.70 4.76 3.70 0.00 0.00 7.14 4.76 5.26 3.85 5.26 0.00 0.00 0.00 0.00 3.77 5.00 12.50 0.00 5.00 0.00 2.17 8.33 4.00 4.35 3.85 0.00 4.55 0.00 3.45 2.00 0.00 4.00 5.56 0.00 NA 0.00 0.00 0.00 0.00 K alternative_donor CaMKI,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,RI_chr4_467374_467424,RI_chr4_467482_467543,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_467273_467446;chr4_467378_467446 chr4_467374_467446 chr4_467447_467481;chr4_467266_467272 20.00 16.67 33.33 14.29 NA 16.67 16.67 30.77 21.05 NA 0.00 27.27 36.36 20.00 0.00 25.00 NA 0.00 22.22 21.05 20.00 0.00 0.00 0.00 20.00 33.33 28.57 NA NA NA 33.33 NA NA 25.00 NA NA NA NA NA 22.22 NA 28.57 0.00 33.33 NA NA NA NA 11.11 NA 16.67 16.67 NA NA 11.11 40.00 14.29 NA K cassette Ten-m,EI_chr3L_22298865_22299141,I_chr3L_22301292_22399991,I_chr3L_22374182_22399991 chr3L - chr3L_22301292_22399991 chr3L_22301292_22333561;chr3L_22333742_22399991 chr3L_22333562_22333741 chr3L_22301192_22301291;chr3L_22399992_22400091 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 K intron_retention Top1 chrX + chrX_15215066_15215186 chrX_15215065_15215066;chrX_15215186_15215187 chrX_15215056_15215065;chrX_15215187_15215404 13.33 NA NA NA NA NA 12.50 NA 15.00 NA NA 13.33 NA NA NA 6.67 NA NA NA 0.00 NA 25.00 18.75 12.50 NA NA NA 23.53 19.05 7.14 NA NA 6.25 NA NA NA 30.77 17.65 14.29 10.53 NA 23.08 NA NA NA NA NA 5.26 13.33 NA NA NA NA NA NA NA NA 10.53 K jcn_only_AA CG6340,I_chrX_15402291_15403750 chrX + chrX_15376571_15377231 chrX_15376571_15377214 chrX_15376446_15376570;chrX_15377232_15377453 14.29 16.13 15.00 21.43 NA NA 3.57 13.79 11.36 NA NA 16.67 NA 22.22 7.14 24.32 9.52 29.63 NA 16.98 NA 3.70 25.64 NA NA NA NA NA 26.09 14.81 28.00 10.00 13.46 16.67 15.00 NA 9.52 17.39 14.29 23.81 NA 4.76 NA 6.90 13.04 12.00 17.39 14.29 12.50 NA 13.16 NA NA NA 9.68 NA NA 9.09 K alternative_donor Dystrophin,noncoding_17759,I_chr3R_15289404_15290179 chr3R + chr3R_15289362_15290221;chr3R_15289437_15290221 chr3R_15289404_15290221 chr3R_15290222_15290279;chr3R_15289350_15289361 62.02 NA 62.50 61.54 NA NA 44.44 62.50 50.00 NA NA 76.92 70.00 50.00 50.00 60.00 62.50 NA 44.44 61.54 NA NA 66.67 NA NA 66.67 NA NA NA 80.00 54.55 NA 62.50 50.00 NA 100.00 66.67 NA NA 60.00 NA 61.54 55.56 83.33 NA NA NA 71.43 58.33 NA NA NA NA NA 70.00 NA NA NA K alternative_donor CaMKI,I_chr4_466377_467256,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_466912_467256;chr4_466816_467256;chr4_467113_467256;chr4_466798_467256;chr4_466896_467256 chr4_466858_467256 chr4_467257_467272;chr4_466792_466797 0.00 0.00 16.67 10.00 NA 0.00 0.00 0.00 7.14 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.67 0.00 NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 12.50 16.67 NA NA NA NA NA 27.27 NA NA 0.00 NA NA 0.00 NA NA NA K intron_retention CG2225,Ef2b chr2L - chr2L_21681285_21681343 chr2L_21681284_21681285;chr2L_21681343_21681344 chr2L_21680757_21681284;chr2L_21681344_21681558 0.00 0.00 0.00 0.01 0.05 0.00 0.00 0.01 0.02 0.00 0.00 0.01 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.15 0.13 0.04 0.00 0.00 0.00 0.02 0.03 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.02 0.03 0.03 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG42611,noncoding_22776,EF_chrX_9366694_9394117,RI_chrX_9367300_9389706 chrX - chrX_9366691_9393918 chrX_9366694_9393918 chrX_9393919_9393956;chrX_9366671_9366690 44.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 44.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG11984,I_chr3R_4837327_4837766,I_chr3R_4845450_4845598 chr3R - chr3R_4839215_4839655;chr3R_4839215_4839561;chr3R_4839215_4839851;chr3R_4839215_4839889;chr3R_4839215_4839799 chr3R_4839215_4839728 chr3R_4839038_4839214;chr3R_4839890_4839901 10.00 9.52 0.00 10.00 NA NA NA 6.67 11.63 NA NA 18.18 NA NA NA NA NA NA 16.00 6.67 NA 0.00 19.05 NA NA 18.18 4.00 NA NA NA NA NA NA 9.09 NA NA NA NA NA 8.00 NA 14.29 NA 5.00 NA 18.18 NA NA 2.56 30.43 NA NA NA NA NA NA 10.00 13.64 K alternative_donor CG6954,I_chr3R_18492755_18493701,I_chr3R_18492801_18502630,I_chr3R_18493099_18493701 chr3R + chr3R_18492761_18493701;chr3R_18492755_18493701;chr3R_18492765_18493701 chr3R_18492801_18493701 chr3R_18493702_18493764;chr3R_18492703_18492754 40.00 NA 50.00 NA NA NA NA 25.00 37.50 NA NA NA NA 50.00 NA 40.00 NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA 28.57 NA NA NA 16.67 NA NA NA K alternative_acceptor CG7546 chr3L + chr3L_7509151_7509218 chr3L_7509151_7509215 chr3L_7508971_7509150;chr3L_7509219_7509646 95.74 94.12 97.14 95.45 90.62 96.77 92.59 92.31 93.07 95.65 97.22 95.83 96.77 96.15 92.50 100.00 89.66 94.59 96.00 95.92 96.43 95.06 95.74 98.41 95.00 100.00 95.16 100.00 95.92 100.00 94.44 97.37 91.84 91.49 87.50 100.00 96.67 95.08 94.67 94.51 90.91 96.00 95.65 100.00 96.61 94.83 100.00 94.59 93.65 97.96 95.77 88.24 97.44 97.56 90.20 97.92 98.04 94.00 K intron_retention Ada2b,RI_chr3R_4068335_4068401 chr3R - chr3R_4063758_4063824 chr3R_4063757_4063758;chr3R_4063824_4063825 chr3R_4062810_4063757;chr3R_4063825_4063904 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 4.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,RI_chr2L_126228_126309 chr2L - chr2L_117760_117819 chr2L_117776_117819 chr2L_117820_117887;chr2L_117691_117759 2.38 1.39 3.39 4.48 3.10 3.37 3.43 3.85 2.75 1.32 1.04 2.48 2.40 2.04 3.12 4.22 2.72 1.74 2.99 3.69 1.82 1.97 2.56 1.97 0.76 5.00 2.25 3.51 3.64 2.40 2.04 1.32 5.77 1.55 3.85 3.10 0.98 0.56 0.94 2.51 3.85 3.36 1.80 2.25 1.27 2.38 1.02 7.32 4.10 1.85 2.82 1.80 0.00 2.29 2.01 1.12 1.20 1.79 K jcn_only_AD BtbVII,I_chr3L_3150858_3150927,I_chr3L_3151185_3151263 chr3L + chr3L_3148688_3149627;chr3L_3148748_3149627 chr3L_3148738_3149627 chr3L_3149628_3150153;chr3L_3148679_3148687 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.17 0.00 NA NA NA NA NA NA NA NA 0.00 K jcn_only_AD CG41378,I_chr2RHet_1545717_1621473,I_chr2RHet_1545717_1621569,I_chr2RHet_1606049_1607768,RI_chr2RHet_1606049_1621284,noncoding_9480 chr2RHet - chr2RHet_1606049_1621473;chr2RHet_1606049_1621636 chr2RHet_1606049_1621569 chr2RHet_1605949_1606048;chr2RHet_1621637_1621662 0.00 0.00 2.13 NA NA 1.92 7.41 0.00 2.15 NA NA 1.50 4.26 5.36 0.00 0.00 2.86 8.11 3.64 3.51 NA 0.00 0.00 0.00 0.00 4.08 0.00 NA 0.00 2.63 1.72 4.26 0.00 3.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 2.56 0.00 8.33 0.00 0.00 0.00 2.54 0.00 0.00 0.00 0.00 0.00 5.08 0.00 0.00 1.22 K jcn_only_AA CG6463,I_chr3L_10686961_10687096 chr3L - chr3L_10686961_10687096 chr3L_10686968_10687096 chr3L_10687097_10687196;chr3L_10686861_10686960 99.45 98.94 99.68 98.80 99.60 99.60 100.00 99.50 99.26 100.00 99.60 99.45 100.00 100.00 100.00 99.04 100.00 100.00 100.00 99.34 98.92 99.21 98.83 98.83 94.74 99.64 100.00 100.00 97.12 98.37 99.20 99.55 99.35 99.76 100.00 99.29 99.45 98.74 98.83 99.66 100.00 99.28 100.00 99.11 99.05 99.64 99.12 99.15 99.34 98.85 99.00 99.18 99.68 99.59 100.00 98.96 99.04 100.00 K intron_retention CG7766,I_chrX_8993495_8994545,I_chrX_8991338_8991387 chrX - chrX_8991553_8991788 chrX_8991552_8991553;chrX_8991788_8991789 chrX_8991388_8991552;chrX_8991789_8992040 0.00 0.00 0.00 0.00 0.00 0.00 4.26 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 1.10 1.59 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD alc,I_chr2R_5023501_5023700 chr2R - chr2R_5023501_5025265 chr2R_5023501_5024456 chr2R_5023401_5023500;chr2R_5025266_5025455 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG1458,I_chr3R_25048492_25048616 chr3R - chr3R_25048204_25048267 chr3R_25048203_25048204;chr3R_25048267_25048268 chr3R_25047848_25048203;chr3R_25048268_25048491 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Mdh,grass chr3R + chr3R_22984674_22984729 chr3R_22984673_22984674;chr3R_22984729_22984730 chr3R_22984625_22984673;chr3R_22984730_22984923 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Eb1,RI_chr2R_2640290_2642206,I_chr2R_2640494_2642206,I_chr2R_2641187_2642206,RI_chr2R_2641944_2642025,I_chr2R_2641954_2642206,I_chr2R_2642491_2642549 chr2R + chr2R_2641187_2642206 chr2R_2641186_2641187;chr2R_2642206_2642207 chr2R_2641118_2641186;chr2R_2642207_2642306 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 95.00 100.00 92.31 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 K intron_retention tay,I_chrX_15774035_15774320,I_chrX_15779977_15780538,RI_chrX_15780874_15781045,I_chrX_15783766_15785978 chrX - chrX_15774255_15774320 chrX_15774254_15774255;chrX_15774320_15774321 chrX_15774070_15774254;chrX_15774321_15774420 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.41 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD eIF-1A,I_chr3R_14106104_14107415,I_chr3R_14106955_14107415 chr3R + chr3R_14106104_14107415;chr3R_14106955_14107415 chr3R_14100864_14107415 chr3R_14107416_14107515;chr3R_14100759_14100863 99.77 99.82 99.84 100.00 99.62 100.00 100.00 99.67 99.92 99.54 100.00 99.75 100.00 99.64 99.30 100.00 100.00 100.00 99.72 99.36 99.64 100.00 99.83 99.79 99.78 99.69 100.00 99.20 99.29 99.52 98.93 100.00 99.50 100.00 99.46 100.00 99.87 99.23 99.76 99.50 99.77 99.91 99.81 99.67 99.84 99.69 99.83 99.59 99.73 100.00 99.45 99.10 99.83 100.00 99.62 99.61 99.83 99.70 K alternative_donor Imp,I_chrX_10699490_10700695,RI_chrX_10699665_10700501,RI_chrX_10699665_10700695 chrX - chrX_10699503_10700474;chrX_10699503_10700501 chrX_10699503_10700695 chrX_10699299_10699502;chrX_10700696_10700795 12.50 28.57 0.00 15.79 25.00 12.50 0.00 6.90 12.90 NA 11.11 17.39 10.00 26.67 33.33 16.00 14.29 12.50 0.00 0.00 16.67 NA 12.50 NA NA 20.00 0.00 NA NA NA 11.11 NA NA 8.33 NA NA NA NA NA 20.00 NA 6.67 23.08 NA NA NA NA 0.00 17.39 NA NA NA NA NA 0.00 NA NA NA K intron_retention Aef1 chr3L + chr3L_21428231_21428454 chr3L_21428230_21428231;chr3L_21428454_21428455 chr3L_21428125_21428230;chr3L_21428455_21429109 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.81 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.90 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 98.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG31689,I_chr2L_2730373_2736310,I_chr2L_2730470_2736310,RI_chr2L_2736137_2736310,I_chr2L_2736230_2736310,I_chr2L_2736431_2737036 chr2L + chr2L_2730470_2736173 chr2L_2730469_2730470;chr2L_2736173_2736174 chr2L_2730383_2730469;chr2L_2736174_2736229 85.71 NA 85.71 80.00 NA 100.00 73.33 78.95 90.32 NA NA 83.33 92.86 93.33 85.71 77.42 90.00 83.33 92.31 95.24 NA NA 76.47 88.89 81.82 87.50 71.43 81.82 NA 100.00 90.00 NA NA 86.21 NA 80.00 NA NA 80.00 71.43 NA 82.35 90.91 91.67 NA NA NA 85.71 80.77 NA 91.67 84.62 NA NA 90.91 NA NA NA K intron_retention mRpL16 chrX + chrX_1784429_1784510 chrX_1784428_1784429;chrX_1784510_1784511 chrX_1784301_1784428;chrX_1784511_1784576 0.00 0.00 0.00 5.88 0.00 3.23 3.92 0.00 2.33 0.00 0.00 0.00 3.12 0.00 0.00 4.29 0.00 0.00 5.56 0.00 0.00 0.00 3.51 0.00 0.00 0.00 2.13 8.11 8.33 0.00 0.00 0.00 7.41 0.00 0.00 0.00 0.00 0.00 2.70 1.67 0.00 2.70 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor ced-6,I_chr2R_5324717_5324924,I_chr2R_5328640_5328696 chr2R - chr2R_5325238_5328696;chr2R_5325238_5329011 chr2R_5325238_5329037 chr2R_5324931_5325237;chr2R_5329038_5329082 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 1.09 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 K alternative_acceptor CG8600,eco chr3L - chr3L_7327555_7327641 chr3L_7327570_7327641 chr3L_7327642_7327709;chr3L_7327490_7327554 97.89 100.00 100.00 95.00 100.00 100.00 96.55 96.43 96.15 100.00 100.00 95.00 100.00 100.00 96.00 95.45 95.24 100.00 95.83 100.00 100.00 98.95 97.62 98.57 97.37 95.65 100.00 100.00 98.18 97.96 96.97 98.08 95.29 100.00 95.45 93.75 97.30 95.52 97.80 99.02 97.67 97.73 100.00 97.89 94.57 97.67 96.15 98.75 92.31 100.00 98.59 96.97 96.88 98.18 96.15 100.00 98.41 100.00 K jcn_only_AD CaMKI,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,RI_chr4_467374_467424,RI_chr4_467482_467543,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_467273_467446;chr4_467374_467446 chr4_467378_467446 chr4_467447_467481;chr4_467266_467272 79.78 NA NA NA NA NA 88.89 78.79 76.00 NA NA NA 73.08 86.36 NA 78.05 NA NA 90.91 81.82 NA NA NA NA NA NA NA NA NA NA 75.00 NA NA 78.38 NA NA NA NA NA 83.33 NA 75.86 95.45 NA NA NA NA NA 93.02 NA NA NA NA NA 80.77 NA 78.26 NA K jcn_only_AD Bap,I_chrX_19625275_19625407 chrX + chrX_19625123_19625407 chrX_19625275_19625407 chrX_19625408_19625507;chrX_19625014_19625122 0.00 0.00 0.57 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.62 0.00 0.00 0.68 0.53 1.02 0.24 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.65 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.27 0.00 0.37 0.00 0.86 0.00 0.00 0.26 0.00 0.50 0.71 0.00 1.77 0.47 0.69 0.00 0.00 K jcn_only_AA CG9776,CG9772 chr3R - chr3R_161452_161507 chr3R_161467_161507 chr3R_161508_161635;chr3R_161143_161451 0.47 0.00 0.00 0.00 0.00 0.00 1.33 1.02 1.05 0.00 0.00 2.13 0.82 1.03 0.00 0.00 0.88 0.00 0.73 1.79 1.30 0.00 0.00 1.42 1.37 0.00 1.69 0.00 0.00 0.00 0.63 0.00 0.00 0.95 0.00 1.75 0.00 0.00 0.00 1.55 0.00 1.55 0.86 1.45 1.27 0.97 0.00 0.00 0.47 0.00 0.75 0.79 1.28 0.00 0.85 0.80 0.97 0.00 K alternative_acceptor CG31075,I_chr3R_22814057_22814129 chr3R - chr3R_22813061_22814129 chr3R_22814057_22814129 chr3R_22814130_22814229;chr3R_22812956_22813060 0.00 0.00 0.00 0.86 0.00 0.00 0.93 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 K alternative_donor CG6178 chr3R + chr3R_19978326_19978811;chr3R_19978271_19978811 chr3R_19978381_19978811 chr3R_19978812_19979489;chr3R_19978101_19978270 0.00 0.00 0.00 4.35 0.00 0.00 3.03 0.00 2.33 0.00 0.00 0.00 0.00 0.00 4.76 4.55 0.00 5.88 0.00 2.50 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 3.03 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 K intron_retention PNGase,I_chr2R_1906759_1906817,I_chr2R_1906899_1906977 chr2R + chr2R_1905861_1905922 chr2R_1905860_1905861;chr2R_1905922_1905923 chr2R_1905769_1905860;chr2R_1905923_1906012 0.00 0.00 0.00 3.88 0.00 0.00 0.00 2.99 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 1.90 2.78 2.02 2.33 0.00 5.06 2.22 3.57 0.00 0.00 0.00 1.41 0.85 0.00 0.00 0.00 3.57 2.25 1.83 1.75 0.62 0.00 1.28 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 K alternative_acceptor CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3018082_3018278;chr2L_3018018_3018278 chr2L_3018025_3018278 chr2L_3018279_3018287;chr2L_3017982_3018017 25.00 41.18 25.00 24.14 NA 13.64 38.24 NA 44.62 37.50 33.33 28.21 NA 26.09 23.53 24.14 45.45 20.00 24.14 NA 23.53 18.75 25.00 16.67 28.57 55.56 NA NA NA 25.00 8.82 45.45 33.33 36.11 NA NA 33.33 NA 28.57 25.00 NA 24.14 23.53 25.00 NA 33.33 NA 25.00 44.19 18.18 25.00 36.36 NA NA NA NA 21.43 42.86 K intron_retention CG3887 chr2L + chr2L_5011132_5011175 chr2L_5011131_5011132;chr2L_5011175_5011176 chr2L_5011056_5011131;chr2L_5011176_5011335 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.76 100.00 100.00 99.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.36 100.00 99.61 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.78 100.00 97.37 99.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention noncoding_20813 chr4 + chr4_926205_927519 chr4_926204_926205;chr4_927519_927520 chr4_926082_926204;chr4_927520_927563 100.00 93.33 88.89 100.00 NA 88.89 100.00 91.30 96.97 NA 100.00 95.65 100.00 93.75 100.00 96.67 100.00 NA 95.45 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 NA 100.00 100.00 94.12 100.00 100.00 K intron_retention Tif-IA chr2L + chr2L_22257903_22257959 chr2L_22257902_22257903;chr2L_22257959_22257960 chr2L_22257653_22257902;chr2L_22257960_22258221 0.00 0.00 0.00 0.55 0.00 0.00 0.00 1.28 0.43 0.00 0.00 1.38 0.00 1.06 1.35 2.31 0.00 0.00 0.00 2.34 0.00 0.00 3.96 2.35 0.00 0.00 2.11 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.98 0.00 0.00 2.33 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3632,RI_chrX_16195880_16196242 chrX + chrX_16193759_16193827 chrX_16193758_16193759;chrX_16193827_16193828 chrX_16193573_16193758;chrX_16193828_16193992 7.69 18.52 6.25 5.00 0.00 8.33 7.27 11.11 10.00 NA 10.53 9.09 7.89 7.41 9.09 7.69 8.00 9.09 4.44 8.33 8.00 0.00 6.25 10.00 15.38 0.00 8.00 NA NA NA 15.38 NA 22.22 5.26 0.00 10.53 0.00 15.00 4.55 0.00 NA 7.58 15.38 10.00 NA 0.00 NA 0.00 5.66 4.35 4.55 0.00 NA NA 10.00 22.22 0.00 0.00 K intron_retention CG31886 chr2L - chr2L_8955587_8957517 chr2L_8955586_8955587;chr2L_8957517_8957518 chr2L_8953483_8955586;chr2L_8957518_8958128 1.61 NA NA 0.00 NA NA 4.76 0.00 4.44 NA NA 0.00 12.50 6.25 10.53 3.23 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA 4.00 NA NA NA NA NA 5.88 NA NA NA K intron_retention CG4038 chr2R - chr2R_16983775_16983831 chr2R_16983774_16983775;chr2R_16983831_16983832 chr2R_16982669_16983774;chr2R_16983832_16984212 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.21 0.69 0.00 0.51 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 K intron_retention scu,RhoGAP16F chrX + chrX_17987491_17987543 chrX_17987490_17987491;chrX_17987543_17987544 chrX_17987237_17987490;chrX_17987544_17987637 14.29 NA NA NA NA NA 30.77 NA 31.58 NA NA 11.76 NA NA NA 14.29 NA NA NA 24.00 NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA 14.29 NA 30.43 NA NA NA NA NA 5.88 NA NA NA NA NA NA 25.00 NA NA 0.00 K jcn_only_AA cals,I_chr4_1136706_1138476,RI_chr4_1137077_1137140,I_chr4_1139644_1142084,RI_chr4_1141233_1142084 chr4 - chr4_1137077_1137140 chr4_1137083_1137140 chr4_1137141_1137224;chr4_1136977_1137076 100.00 100.00 100.00 98.89 96.00 100.00 100.00 99.10 97.96 NA 100.00 100.00 98.11 100.00 96.97 99.24 100.00 97.62 100.00 98.86 100.00 100.00 96.36 97.87 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA 99.11 96.00 NA 100.00 100.00 100.00 98.00 NA 100.00 100.00 98.11 NA 98.41 100.00 NA 100.00 98.21 98.65 100.00 NA 100.00 97.50 97.83 100.00 93.55 K jcn_only_AA RpL34b,CG9356 chr3R - chr3R_5226745_5226917 chr3R_5226748_5226917 chr3R_5226918_5226997;chr3R_5226664_5226744 2.82 4.04 3.42 3.23 2.81 2.51 2.56 2.71 2.65 3.91 2.30 2.26 3.20 2.58 2.03 4.32 3.09 2.91 2.08 1.94 2.24 5.10 0.00 2.46 1.75 3.20 0.00 0.00 6.19 6.11 2.83 5.23 2.55 3.29 5.21 3.92 3.30 1.47 1.04 5.52 3.80 3.70 2.58 1.61 4.26 7.07 2.27 3.50 3.91 1.67 7.69 2.82 4.52 0.00 2.30 2.70 2.06 5.75 K intron_retention lola,I_chr2R_6380094_6419543,I_chr2R_6380747_6419543,I_chr2R_6394546_6419543,I_chr2R_6397642_6398119,RI_chr2R_6403557_6403850,I_chr2R_6403557_6406705,I_chr2R_6404486_6419543,R_chr2R_6408775_6419537,I_chr2R_6409616_6419543,I_chr2R_6413368_6414281,I_chr2R_6419625_6419686,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6397642_6419543 chr2R_6397641_6397642;chr2R_6419543_6419544 chr2R_6397549_6397641;chr2R_6419544_6419624 19.05 16.98 17.39 21.11 25.53 26.67 25.32 20.00 26.55 20.83 28.26 18.09 22.45 26.92 22.22 29.17 15.00 16.36 24.07 22.06 11.63 8.05 21.43 19.40 22.73 30.51 20.59 25.93 13.21 9.86 16.00 12.73 9.77 19.05 13.89 12.33 21.74 18.03 15.24 15.15 8.93 21.70 23.40 23.88 12.50 8.22 10.00 11.29 27.36 15.00 17.65 22.45 18.75 14.71 17.11 21.62 30.30 13.41 K alternative_acceptor I_chr3L_834336_834491,CG13887,Gr61a chr3L + chr3L_838625_839249 chr3L_838625_839102 chr3L_838049_838624;chr3L_839250_839740 0.49 0.26 0.72 0.55 0.49 0.23 0.38 0.78 0.43 0.30 0.53 0.69 0.31 0.28 0.53 0.50 0.28 0.18 1.28 0.35 0.36 2.58 0.64 0.62 0.53 0.38 0.42 0.64 1.88 0.35 0.53 0.82 0.42 0.33 0.53 0.82 0.29 0.00 0.31 0.66 0.46 0.42 0.31 0.81 0.45 0.58 0.52 0.56 0.50 0.71 0.59 0.64 0.24 1.00 0.35 0.41 0.13 0.00 K alternative_acceptor CG10600,I_chr2L_18836445_18836522,RI_chr2L_18838793_18838882 chr2L - chr2L_18838793_18838882 chr2L_18838796_18838882 chr2L_18838883_18838982;chr2L_18838693_18838792 96.30 100.00 95.45 96.55 100.00 95.00 96.30 100.00 97.78 100.00 94.44 95.45 94.12 93.75 88.24 96.00 100.00 93.75 100.00 100.00 100.00 94.74 93.55 100.00 100.00 100.00 100.00 100.00 96.30 96.15 96.67 91.67 97.22 100.00 100.00 95.83 96.97 94.74 96.15 97.78 93.33 97.73 100.00 96.00 100.00 94.44 100.00 100.00 97.73 88.24 96.30 91.67 93.33 84.62 95.65 91.67 90.00 94.74 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2393243 chrX_2388671_2389073;chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2393243 chrX_2389074_2389271;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664 chrX_2388641_2388670;chrX_2393244_2393291 40.00 NA NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention lig,I_chr2R_3959744_3959851,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3959744_3959867 chr2R_3959743_3959744;chr2R_3959867_3959868 chr2R_3959644_3959743;chr2R_3959868_3959951 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG3884,I_chr2R_8837592_8837657 chr2R - chr2R_8837592_8839677 chr2R_8837592_8837657 chr2R_8837492_8837591;chr2R_8839678_8839836 85.45 87.76 87.06 71.52 89.44 81.97 80.59 86.98 84.38 84.62 87.31 96.67 89.22 82.68 85.79 79.29 85.45 88.51 78.99 81.12 85.09 78.52 83.33 85.53 76.76 69.63 83.56 89.29 88.30 86.84 79.90 87.89 93.58 82.94 79.63 65.25 85.06 81.19 88.12 83.00 92.00 86.71 84.96 82.16 89.83 92.69 90.55 90.61 80.88 87.64 80.61 85.00 87.89 89.74 79.79 89.11 90.65 93.44 K cassette RpS5a,I_chrX_17037805_17039048,I_chrX_17037805_17040830,I_chrX_17038786_17039048 chrX - chrX_17037805_17040830 chrX_17037805_17039048;chrX_17039166_17040830 chrX_17039049_17039165 chrX_17037705_17037804;chrX_17040831_17040930 100.00 100.00 100.00 99.97 99.95 100.00 99.97 99.97 100.00 100.00 100.00 100.00 100.00 100.00 99.97 99.95 100.00 99.96 100.00 99.93 99.95 99.97 99.90 100.00 99.96 100.00 100.00 99.92 100.00 99.96 100.00 100.00 99.96 100.00 99.95 99.96 100.00 100.00 100.00 100.00 100.00 99.98 100.00 99.97 100.00 99.97 100.00 99.95 99.97 99.95 99.97 100.00 99.98 99.98 100.00 100.00 100.00 100.00 K alternative_last_exon Xpd chr2R + chr2R_17060673_17061031 chr2R_17060673_17060958 chr2R_17061032_17062009 chr2R_17060959_17061027 chr2R_17060394_17060672 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9240,Pis chrX - chrX_15596449_15596541 chrX_15596448_15596449;chrX_15596541_15596542 chrX_15596297_15596448;chrX_15596542_15596695 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.71 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Mmp1,E_chr2R_20560380_20562585,I_chr2R_20564123_20565214,I_chr2R_20569965_20572193 chr2R - chr2R_20559830_20562495 chr2R_20560840_20562495 chr2R_20562496_20562664;chr2R_20559732_20559829 3.85 2.36 3.82 2.55 3.12 2.39 3.85 3.87 3.18 5.79 5.00 7.61 3.03 3.97 2.72 4.32 3.50 3.05 3.05 2.44 3.57 6.72 3.55 2.97 4.04 3.88 2.96 9.47 4.12 4.84 4.66 7.94 7.92 2.75 4.02 4.69 2.15 2.32 1.96 5.43 10.22 3.06 4.26 5.05 4.64 6.39 3.02 17.88 3.28 4.11 4.05 2.56 4.69 2.62 3.16 3.81 3.74 17.99 K jcn_only_AD RI_chr3L_17480321_17481164,Oatp74D,chr3L_17480319_17480976.0,I_chr3L_17480594_17481164,I_chr3L_17500359_17500724 chr3L + chr3L_17480321_17481164;chr3L_17480594_17481164;chr3L_17480301_17481164 chr3L_17480290_17481164 chr3L_17481165_17481264;chr3L_17480274_17480289 61.54 NA NA NA NA NA NA NA 61.54 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N cassette RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817 chr2R + chr2R_15330246_15330817 chr2R_15330246_15330317;chr2R_15330604_15330817 chr2R_15330318_15330603 chr2R_15330177_15330245;chr2R_15330818_15330917 100.00 100.00 100.00 99.93 100.00 99.90 100.00 99.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.93 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.90 99.90 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention I_chr3L_1494947_1496080,pUf68,I_chr3L_1499710_1499771,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1499338_1500244 chr3L_1499337_1499338;chr3L_1500244_1500245 chr3L_1499043_1499337;chr3L_1500245_1500308 67.82 76.92 47.06 77.42 63.64 86.67 NA 76.67 65.71 44.44 55.56 79.59 96.43 72.41 66.67 76.00 75.00 83.33 73.91 73.53 47.37 53.85 73.08 81.48 61.11 50.00 60.00 63.64 70.59 71.43 34.78 69.23 66.67 75.86 65.22 35.00 84.00 70.59 60.87 90.32 64.00 70.97 76.92 63.64 50.00 68.97 61.11 66.67 77.42 73.68 65.22 61.11 72.73 62.50 65.00 57.14 61.11 70.83 K alternative_donor E_chr4_592469_594231,Ephrin,I_chr4_595055_597604,RI_chr4_596272_596341 chr4 + chr4_592737_594238;chr4_592646_594238;chr4_592490_594238;chr4_592469_594238;chr4_592410_594238;chr4_592798_594238 chr4_592593_594238 chr4_594239_594331;chr4_592404_592409 67.43 75.00 100.00 59.09 100.00 66.67 63.64 57.89 62.50 NA 100.00 62.50 57.14 75.00 83.33 68.18 71.43 100.00 77.78 61.54 66.67 100.00 100.00 66.67 66.67 50.00 60.00 NA 100.00 100.00 83.33 NA NA 68.18 66.67 100.00 66.67 NA NA 80.00 NA 64.29 83.33 60.00 NA 50.00 NA 0.00 57.89 NA 71.43 50.00 NA NA 85.71 NA NA NA K intron_retention CG7692 chr3L + chr3L_17349381_17349441 chr3L_17349380_17349381;chr3L_17349441_17349442 chr3L_17348767_17349380;chr3L_17349442_17351141 92.31 NA 100.00 100.00 NA 100.00 78.57 81.82 93.33 NA NA 93.33 NA NA 92.31 100.00 NA 90.91 100.00 80.00 NA NA 100.00 100.00 NA 100.00 88.89 100.00 100.00 NA 81.82 NA 90.91 92.31 90.00 88.89 NA NA NA 83.33 88.89 93.33 88.89 NA NA 100.00 NA 91.67 100.00 88.89 NA NA 100.00 NA 92.31 NA 81.82 91.67 K jcn_only_AA RanBPM chr2R + chr2R_6320709_6320779 chr2R_6320709_6320776 chr2R_6320544_6320708;chr2R_6320780_6320970 6.40 7.61 5.93 8.96 11.21 4.39 5.95 7.10 5.71 9.17 3.30 2.45 5.13 3.88 4.50 6.43 6.25 10.96 5.10 9.77 3.33 5.60 8.14 7.45 4.23 2.44 9.90 6.67 6.40 8.39 7.37 3.37 5.67 6.59 8.04 9.48 6.08 6.21 8.12 6.77 4.60 7.55 6.45 6.53 8.96 8.51 6.33 6.21 9.91 5.66 5.29 6.40 6.96 9.76 8.97 5.61 5.59 5.94 K intron_retention drongo,I_chr2L_837379_847733 chr2L - chr2L_835548_836545 chr2L_835547_835548;chr2L_836545_836546 chr2L_835353_835547;chr2L_836546_837378 0.00 0.45 0.00 0.88 0.00 0.00 0.00 0.57 1.25 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 1.57 0.00 2.35 0.85 1.48 0.63 0.00 0.00 0.00 0.45 1.05 2.48 1.06 0.00 1.85 1.33 1.61 0.00 1.08 0.62 0.00 0.00 0.00 3.49 1.49 0.00 1.85 1.10 1.02 0.00 3.88 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 2.20 N jcn_only_AD CG8531,RI_chr2R_10144869_10144912 chr2R + chr2R_10145224_10145276;chr2R_10145070_10145276 chr2R_10145138_10145276 chr2R_10145277_10145393;chr2R_10144926_10145069 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.84 9.21 0.00 0.00 0.00 0.00 0.00 0.00 7.55 0.00 0.00 0.00 0.00 0.00 23.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.95 0.00 0.00 5.70 0.00 0.00 0.00 12.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.53 8.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mam,RI_chr2R_9879614_9897667,I_chr2R_9898687_9913084 chr2R + chr2R_9879610_9897667 chr2R_9879609_9879610;chr2R_9897667_9897668 chr2R_9879514_9879609;chr2R_9897668_9897767 0.00 0.00 0.00 6.25 0.00 0.00 6.06 3.45 3.77 NA NA 4.76 7.41 2.63 3.03 7.55 8.70 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 4.17 4.65 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 6.67 0.00 NA 0.00 0.00 NA 2.04 0.00 0.00 NA 0.00 NA 3.45 0.00 0.00 0.00 K intron_retention CG1667,RI_chr2R_5731409_5731653,I_chr2R_5732410_5732504 chr2R + chr2R_5732410_5732494 chr2R_5732409_5732410;chr2R_5732494_5732495 chr2R_5732341_5732409;chr2R_5732495_5732561 15.15 20.00 10.34 35.21 11.76 12.50 25.42 15.15 14.84 0.00 9.52 13.33 10.00 12.50 14.93 22.86 12.77 6.12 19.30 9.02 10.64 11.11 22.45 13.73 20.69 22.64 19.30 10.00 17.65 10.34 15.19 15.69 22.73 16.13 27.03 53.33 10.53 10.87 8.89 8.89 35.29 13.08 19.23 15.00 17.74 19.18 8.70 20.37 21.05 15.69 13.33 14.63 18.18 18.18 11.84 15.62 17.39 25.32 K intron_retention cul-2,I_chr2L_21659273_21659705,I_chr2L_21659761_21659839,I_chr2L_21661637_21661945,I_chr2L_21662021_21662083 chr2L + chr2L_21659761_21659839 chr2L_21659760_21659761;chr2L_21659839_21659840 chr2L_21659706_21659760;chr2L_21659840_21659939 89.44 NA NA 69.23 NA NA 92.31 90.91 NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA 78.57 92.31 NA NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA K jcn_only_AD CG17549,R_chr2L_19388305_19388473,RI_chr2L_19388570_19389427,I_chr2L_19388570_19389922 chr2L - chr2L_19388570_19389427;chr2L_19388570_19389764;chr2L_19388570_19389935 chr2L_19388570_19389926 chr2L_19388474_19388569;chr2L_19389936_19390022 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor ens,I_chr3L_4130719_4131120 chr3L - chr3L_4132204_4133548 chr3L_4132213_4133548 chr3L_4133549_4133554;chr3L_4131956_4132203 96.30 NA 88.89 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 92.86 NA 63.64 81.82 NA NA NA NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA 87.50 NA 85.71 NA 86.67 100.00 92.31 NA 70.00 87.50 84.62 NA 96.30 93.75 NA 100.00 NA NA NA 90.00 NA NA 100.00 K intron_retention CG3529,CG32038,CG3552 chr3L + chr3L_9445134_9445224 chr3L_9445133_9445134;chr3L_9445224_9445225 chr3L_9444976_9445133;chr3L_9445225_9445270 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 2.56 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention l(1)G0289,I_chrX_10254197_10254506,I_chrX_10254197_10259575 chrX - chrX_10254197_10260156 chrX_10254196_10254197;chrX_10260156_10260157 chrX_10254097_10254196;chrX_10260157_10260387 0.40 0.48 0.00 2.27 0.00 0.00 0.50 2.08 1.15 0.00 0.00 0.61 1.28 0.91 0.00 0.63 0.00 1.13 1.12 0.16 0.00 0.92 1.34 1.19 0.40 0.00 1.77 1.73 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.96 1.38 1.02 0.55 0.00 1.07 0.00 0.37 0.00 0.00 0.00 0.51 0.74 0.57 0.66 0.57 0.00 0.00 1.30 0.00 0.00 0.40 K alternative_acceptor psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6501632_6502052;chr2R_6501632_6502037 chr2R_6501632_6502058 chr2R_6501448_6501631;chr2R_6502059_6503753 0.00 1.96 0.00 2.44 0.00 0.00 3.23 0.00 1.15 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 1.96 0.00 5.56 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 2.27 1.64 0.00 0.00 0.00 0.00 0.00 0.00 5.41 K jcn_only_AD CG13163,RI_chr2R_8209160_8209216 chr2R + chr2R_8209156_8209216 chr2R_8209160_8209216 chr2R_8209217_8209316;chr2R_8209060_8209155 2.27 NA NA 0.00 NA NA 4.35 2.63 2.27 NA NA 8.11 NA NA 0.00 0.00 NA 5.00 NA 0.00 NA NA 4.17 0.00 NA NA 0.00 NA NA NA 0.00 NA 0.00 4.76 NA NA 7.14 NA 8.33 4.55 NA 7.41 NA 0.00 5.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA 5.00 0.00 5.00 K intron_retention blw,I_chr2R_18687257_18687400 chr2R + chr2R_18688876_18688987 chr2R_18688875_18688876;chr2R_18688987_18688988 chr2R_18688074_18688875;chr2R_18688988_18689690 0.00 0.00 0.00 0.14 0.00 0.00 0.20 0.27 0.07 0.00 0.00 0.17 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.21 0.00 0.00 0.53 1.77 0.46 0.00 0.00 0.00 0.00 0.13 0.24 0.19 0.00 0.00 0.42 0.89 0.84 0.24 0.00 0.14 0.00 0.41 0.49 0.00 0.00 0.61 0.38 0.00 0.26 0.42 0.00 0.22 0.49 0.47 K alternative_donor sec24,I_chr2R_5768722_5769689 chr2R - chr2R_5768722_5769384;chr2R_5768722_5769687 chr2R_5768722_5769689 chr2R_5768622_5768721;chr2R_5769690_5769789 4.55 0.00 0.00 5.17 0.00 6.06 4.08 2.04 6.06 9.09 18.18 7.94 3.45 2.78 6.82 8.16 3.03 9.38 8.57 3.51 8.33 2.04 3.51 10.00 2.22 0.00 7.55 5.26 4.17 3.85 2.17 5.26 3.57 2.00 5.26 2.63 5.00 8.00 5.36 1.35 0.00 3.45 10.53 6.06 17.65 3.12 4.35 8.33 9.09 6.90 6.85 3.85 4.00 0.00 7.84 4.55 8.00 0.00 K intron_retention Rbcn-3A chrX - chrX_6136318_6136386 chrX_6136317_6136318;chrX_6136386_6136387 chrX_6136248_6136317;chrX_6136387_6136656 0.00 0.00 1.28 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.98 0.00 0.00 0.00 0.00 1.31 0.00 5.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 1.77 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4630,RI_chr2R_9103472_9103634,I_chr2R_9103765_9103852,I_chr2R_9103910_9104108,I_chr2R_9103956_9104108,RI_chr2R_9104206_9104265 chr2R - chr2R_9103765_9104108 chr2R_9103764_9103765;chr2R_9104108_9104109 chr2R_9103665_9103764;chr2R_9104109_9104202 0.00 0.00 7.69 25.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 NA 5.56 0.00 0.00 5.26 NA 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA K alternative_acceptor CG11347,I_chr3L_4412551_4417819 chr3L + chr3L_4419664_4419739 chr3L_4419664_4419713 chr3L_4419429_4419663;chr3L_4419740_4420073 0.00 0.00 0.00 0.00 0.00 5.00 0.00 3.23 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.99 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG8177,E_chr3L_9756800_9772650,RI_chr3L_9757294_9758708,I_chr3L_9773534_9773635,I_chr3L_9774319_9774602 chr3L + chr3L_9756800_9764754 chr3L_9757294_9764754 chr3L_9764755_9765019;chr3L_9756700_9756799 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 K intron_retention hfw chrX + chrX_1563971_1564848 chrX_1563970_1563971;chrX_1564848_1564849 chrX_1563625_1563970;chrX_1564849_1565762 1.18 0.00 3.77 4.11 0.00 0.00 0.00 1.41 1.03 3.85 0.00 1.18 0.00 0.00 4.48 2.22 0.00 0.00 4.17 2.70 0.00 16.03 6.15 0.00 2.22 0.00 0.00 10.00 0.00 1.16 3.12 0.00 1.75 2.70 1.25 2.41 3.81 0.00 5.81 2.12 2.63 2.61 0.00 2.33 1.74 0.00 0.00 1.20 3.49 0.00 0.00 0.00 0.00 3.33 1.72 0.00 0.00 0.00 K jcn_only_AD Gga chrX + chrX_9495403_9496113 chrX_9495445_9496113 chrX_9496114_9496708;chrX_9495287_9495402 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.04 100.00 100.00 99.07 100.00 99.21 100.00 98.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.94 N alternative_donor CG17255,I_chrX_10366177_10366615,RI_chrX_10366177_10367270 chrX - chrX_10366177_10367360;chrX_10366177_10367201;chrX_10366177_10367458;chrX_10366177_10367270;chrX_10366177_10368085 chrX_10366177_10366615 chrX_10366077_10366176;chrX_10368086_10368118 1.37 1.54 1.30 0.85 1.92 0.00 1.06 0.83 0.71 1.64 1.69 1.32 1.39 1.18 1.01 0.98 1.35 1.64 2.02 0.81 0.00 1.64 2.67 1.18 0.00 0.00 1.37 3.39 2.94 1.19 1.18 1.69 2.16 0.82 1.47 1.56 1.35 1.79 1.59 1.56 1.47 0.67 1.52 1.39 1.82 1.20 3.12 1.25 1.43 0.00 2.44 2.63 2.94 0.00 0.93 0.00 3.03 0.85 K intron_retention Ipp chr3R + chr3R_9785137_9785420 chr3R_9785136_9785137;chr3R_9785420_9785421 chr3R_9784533_9785136;chr3R_9785421_9785632 2.17 0.00 0.00 8.20 0.00 0.00 0.00 4.55 1.54 5.26 6.67 2.90 4.76 5.56 0.00 0.00 0.00 4.17 0.00 5.88 0.00 12.00 8.51 9.52 8.57 0.00 1.96 2.38 7.14 0.00 2.56 3.85 0.00 0.00 2.70 0.00 0.00 0.00 3.12 10.64 4.00 7.27 0.00 0.00 0.00 0.00 2.38 6.25 3.70 0.00 0.00 0.00 NA 0.00 7.69 6.12 0.00 3.57 K jcn_only_AA CG2225,I_chr2L_21669234_21669366 chr2L - chr2L_21669234_21669366 chr2L_21669239_21669366 chr2L_21669367_21669466;chr2L_21669134_21669233 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.86 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 97.44 100.00 98.48 98.36 97.83 100.00 100.00 100.00 97.96 100.00 100.00 98.88 100.00 100.00 100.00 97.06 100.00 100.00 98.82 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 97.44 K intron_retention MCPH1,RI_chr2R_7790917_7791377 chr2R - chr2R_7786568_7789862 chr2R_7786567_7786568;chr2R_7789862_7789863 chr2R_7786424_7786567;chr2R_7789863_7790055 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.13 0.00 0.00 0.00 1.72 0.00 0.00 2.94 0.00 0.00 0.00 2.56 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 NA 0.00 0.00 0.00 0.00 1.82 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 K cassette Taf1 chr3R + chr3R_2480387_2480930 chr3R_2480387_2480707;chr3R_2480804_2480930 chr3R_2480708_2480803 chr3R_2480192_2480386;chr3R_2480931_2481770 3.03 3.23 2.38 1.59 4.00 3.23 0.00 0.00 0.00 2.86 0.00 3.39 0.00 0.00 0.00 2.38 3.70 5.41 2.38 1.06 0.00 26.00 4.65 5.26 3.45 6.25 2.13 8.57 5.56 5.13 2.44 3.85 3.57 1.67 3.57 8.57 4.44 4.00 3.39 4.62 1.54 2.86 0.00 6.67 8.70 3.03 2.63 2.78 2.70 4.00 4.08 3.85 2.56 2.13 3.77 2.17 2.00 1.75 K intron_retention SdhA,I_chr2R_15281949_15282989,I_chr2R_15283283_15283411 chr2R - chr2R_15281949_15283191 chr2R_15281948_15281949;chr2R_15283191_15283192 chr2R_15281849_15281948;chr2R_15283192_15283282 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907784_9908424;chr2L_9908142_9908424 chr2L_9907848_9908424 chr2L_9908425_9908505;chr2L_9907756_9907783 11.86 13.11 7.69 12.31 18.18 12.50 18.33 10.78 13.67 NA 11.43 14.61 13.89 10.71 11.36 3.75 16.67 5.66 8.33 12.28 19.51 10.34 5.21 7.94 13.21 9.09 14.63 15.62 8.89 11.29 13.33 10.34 15.49 11.01 9.62 6.17 13.43 15.52 15.87 8.24 10.00 8.70 3.23 11.11 24.14 4.00 13.64 17.86 8.70 17.02 13.95 17.31 13.95 7.41 9.33 13.95 19.44 4.65 K intron_retention CG32529 chrX + chrX_19781447_19793044 chrX_19781446_19781447;chrX_19793044_19793045 chrX_19781430_19781446;chrX_19793045_19793075 14.84 NA 14.29 11.11 NA NA 31.58 26.32 12.20 NA NA 14.29 12.50 25.00 15.38 22.73 NA 14.29 16.67 16.67 NA 12.50 5.71 0.00 NA 25.00 NA NA NA NA 13.33 NA NA 20.00 NA 0.00 NA NA NA 25.00 NA 31.82 NA NA NA NA NA NA 33.33 NA 8.70 12.50 NA NA 30.77 NA NA NA K intron_retention CG14222,I_chrX_19515684_19515800,I_chrX_19515698_19515809,e(y)3 chrX - chrX_19515684_19515809 chrX_19515683_19515684;chrX_19515809_19515810 chrX_19515598_19515683;chrX_19515810_19515900 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.87 1.49 0.00 0.00 1.02 2.13 1.72 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.02 2.94 0.00 2.13 0.00 1.54 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 2.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 K intron_retention cni,RI_chr2L_16309575_16309999,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16310624_16310690 chr2L_16310623_16310624;chr2L_16310690_16310691 chr2L_16310441_16310623;chr2L_16310691_16310700 63.33 74.29 50.00 62.50 59.57 61.82 59.60 57.48 64.62 66.67 56.25 65.56 57.14 64.81 60.94 57.84 64.15 60.00 57.14 55.17 57.58 72.41 70.73 61.54 69.23 63.51 76.92 75.00 82.61 55.00 61.40 75.00 68.18 58.12 74.07 66.67 61.11 70.27 58.70 81.63 57.69 64.21 51.72 72.73 63.33 65.71 60.00 80.95 63.06 65.52 65.91 68.42 50.00 73.91 60.00 65.38 48.72 55.00 K intron_retention CG6672,I_chr3R_7041333_7041414,I_chr3R_7041347_7041556,RI_chr3R_7044164_7044221 chr3R - chr3R_7039867_7039935 chr3R_7039866_7039867;chr3R_7039935_7039936 chr3R_7039670_7039866;chr3R_7039936_7040346 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 1.28 K jcn_only_AD kar,I_chr3R_8510245_8510617,I_chr3R_8510258_8513437,I_chr3R_8514177_8514930 chr3R - chr3R_8510245_8510617;chr3R_8510245_8513437 chr3R_8510245_8510655 chr3R_8510234_8510244;chr3R_8513438_8513461 0.00 NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA K multi_cassette LpR2 chr3R - chr3R_21527384_21539563 chr3R_21527384_21532008;chr3R_21532208_21532537;chr3R_21533936_21535012;chr3R_21535240_21535746;chr3R_21535870_21539563 chr3R_21532009_21532207;chr3R_21532538_21533935;chr3R_21535013_21535239;chr3R_21535747_21535869 chr3R_21527372_21527383;chr3R_21539564_21539578 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 NA 100.00 66.67 NA 100.00 100.00 NA 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 100.00 K alternative_acceptor CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15766003_15766068;chrX_15766003_15766047 chrX_15766003_15766062 chrX_15765903_15766002;chrX_15766069_15766147 91.67 100.00 100.00 93.33 87.50 NA 90.91 83.33 100.00 NA 88.89 89.47 92.86 88.89 91.67 94.74 87.50 NA 85.71 100.00 NA NA 100.00 NA NA 85.71 NA NA NA NA 92.31 NA NA 80.95 NA NA NA NA NA 91.67 NA 96.15 91.67 100.00 NA NA NA NA 86.36 NA 90.91 NA NA NA 94.44 NA NA NA K intron_retention CG3984 chr3R + chr3R_10962996_10963055 chr3R_10962995_10962996;chr3R_10963055_10963056 chr3R_10962933_10962995;chr3R_10963056_10963149 0.00 NA NA 5.26 NA NA 0.00 0.00 9.09 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 5.26 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA 0.00 NA 7.69 NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 5.56 NA NA NA NA NA 0.00 NA NA 0.00 K alternative_last_exon bab1 chr3L - chr3L_1040355_1099100 chr3L_1079673_1099100 chr3L_1039796_1040354 chr3L_1079044_1079672 chr3L_1099101_1101094 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA 20.00 0.00 0.00 0.00 NA 0.00 NA 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA K alternative_acceptor simj,I_chr3L_10680263_10680313 chr3L + chr3L_10680263_10680337 chr3L_10680263_10680313 chr3L_10680176_10680262;chr3L_10680338_10680413 0.00 0.00 0.00 1.09 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 1.56 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3321,RI_chr3R_10154615_10155360 chr3R + chr3R_10152906_10152974 chr3R_10152905_10152906;chr3R_10152974_10152975 chr3R_10152858_10152905;chr3R_10152975_10153473 0.00 0.00 0.00 13.89 NA NA 8.51 2.63 2.78 0.00 NA 0.00 0.00 NA 6.67 0.00 NA 0.00 0.00 8.00 0.00 0.00 0.00 NA NA 0.00 37.04 38.46 19.05 0.00 NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 2.86 NA 7.41 10.53 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA 5.88 6.90 K alternative_acceptor hkl chr2L + chr2L_19046143_19046214 chr2L_19046143_19046206 chr2L_19045522_19046142;chr2L_19046215_19047047 89.29 81.82 77.27 100.00 100.00 94.44 76.32 94.87 90.57 66.67 82.35 87.50 100.00 100.00 88.00 93.10 94.74 81.82 95.65 90.20 88.24 81.25 97.06 95.83 76.47 94.74 100.00 82.35 77.78 92.59 92.00 94.44 83.33 89.47 93.75 100.00 92.00 94.44 87.50 88.24 95.45 85.11 94.44 85.19 75.00 96.15 87.50 84.38 88.10 85.19 85.71 77.27 86.36 89.29 96.30 95.83 80.65 87.50 K intron_retention CG2225 chr2L - chr2L_21669914_21670534 chr2L_21669913_21669914;chr2L_21670534_21670535 chr2L_21669367_21669913;chr2L_21670535_21671140 0.00 0.00 0.00 2.56 0.00 0.00 0.00 3.92 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K intron_retention CG8408,noncoding_24410 chrX - chrX_17518239_17519562 chrX_17518238_17518239;chrX_17519562_17519563 chrX_17518213_17518238;chrX_17519563_17519691 3.12 2.65 4.76 5.47 1.79 4.81 2.48 5.81 3.72 2.08 0.00 3.85 9.21 6.12 2.82 4.97 3.12 1.06 3.85 3.77 2.11 3.91 2.07 3.62 1.30 3.60 7.32 13.70 0.00 0.00 2.61 3.17 0.00 5.52 2.27 1.25 2.94 1.43 3.92 4.00 0.00 5.70 4.08 2.15 0.00 3.31 2.16 1.67 4.39 4.00 4.43 3.70 0.00 2.35 4.41 1.79 2.99 0.00 K intron_retention rl,I_chr2RHet_199154_207044,RI_chr2RHet_203476_203577,RI_chr2RHet_203592_207044,R_chr2RHet_207162_232568,I_chr2RHet_232696_247338,RI_chr2RHet_240197_247338 chr2RHet + chr2RHet_203476_203529 chr2RHet_203475_203476;chr2RHet_203529_203530 chr2RHet_203436_203475;chr2RHet_203530_203548 7.14 NA NA NA NA NA NA NA 14.29 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG32016,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_975490_975546 chr4_975489_975490;chr4_975546_975547 chr4_975436_975489;chr4_975547_975646 0.00 0.00 0.00 4.65 0.00 0.00 0.00 1.39 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 NA 0.00 0.00 0.00 3.12 6.25 NA 0.00 NA 0.00 0.00 0.00 1.54 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG9328 chr2L + chr2L_20797843_20797963 chr2L_20797842_20797843;chr2L_20797963_20797964 chr2L_20797733_20797842;chr2L_20797964_20798514 98.57 96.55 98.95 99.33 98.36 96.30 98.46 100.00 97.75 97.78 98.48 97.45 99.31 98.35 98.99 96.40 99.21 98.80 97.92 94.58 98.44 90.00 99.06 98.57 100.00 98.84 100.00 97.92 100.00 98.57 99.07 96.43 100.00 98.25 94.44 100.00 100.00 100.00 95.83 99.09 100.00 98.43 99.12 99.12 100.00 98.25 100.00 95.08 97.97 97.83 98.99 100.00 100.00 97.44 99.17 98.36 94.67 98.21 K alternative_acceptor CG15083 chr2R + chr2R_14724084_14724159 chr2R_14724084_14724130 chr2R_14723921_14724083;chr2R_14724160_14724348 0.00 0.00 0.53 0.44 0.88 0.00 0.00 0.76 0.67 0.00 0.75 0.63 0.00 0.00 0.93 0.00 0.78 0.00 0.00 0.52 0.00 0.00 0.43 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.61 0.00 0.00 0.93 0.00 0.00 0.92 0.00 0.44 0.52 0.00 0.86 0.00 0.00 0.60 1.03 0.78 0.00 0.00 0.44 0.56 0.00 0.64 0.00 0.00 1.00 0.43 0.70 K alternative_donor nrv2,I_chr2L_6791842_6794492,I_chr2L_6793397_6794492,I_chr2L_6793405_6793916,I_chr2L_6793405_6794499,I_chr2L_6793684_6794492 chr2L - chr2L_6793405_6794328;chr2L_6793405_6794492;chr2L_6793405_6794551 chr2L_6793405_6794316 chr2L_6793305_6793404;chr2L_6794552_6794592 0.00 0.00 0.00 0.00 0.00 0.00 4.55 2.78 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 N intron_retention CG10353,I_chrX_11775936_11778830,I_chrX_11778617_11778830,RI_chrX_11780885_11780988 chrX - chrX_11775936_11776058 chrX_11775935_11775936;chrX_11776058_11776059 chrX_11775836_11775935 43.75 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.00 NA NA NA NA NA 43.75 NA NA 41.18 NA NA NA NA NA NA NA 42.86 NA NA 50.00 NA NA NA NA NA NA NA K alternative_donor Myd88 chr2R - chr2R_5191841_5192478 chr2R_5191841_5192444 chr2R_5191090_5191840;chr2R_5192479_5192665 0.00 0.00 4.35 0.00 0.00 0.00 2.38 0.00 1.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 1.89 2.56 0.00 1.87 0.00 1.85 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 1.12 1.12 0.69 0.00 0.00 0.00 0.00 1.90 0.00 0.00 0.98 0.00 0.00 0.00 0.00 K jcn_only_AD l(2)k14505,I_chr2L_21261891_21262012,I_chr2L_21275807_21277205 chr2L + chr2L_21261891_21262012 chr2L_21261958_21262012 chr2L_21262013_21262112;chr2L_21261791_21261890 98.21 99.06 98.21 97.55 98.57 95.92 100.00 99.33 98.09 97.56 93.83 97.21 100.00 97.40 97.39 97.99 100.00 100.00 99.15 95.12 97.10 100.00 98.04 97.78 100.00 100.00 96.30 97.92 97.89 98.36 95.04 96.77 98.96 98.77 98.00 94.79 96.20 96.59 96.06 98.32 98.68 98.76 97.75 100.00 100.00 99.38 97.62 94.44 99.40 96.18 99.40 98.65 99.18 96.61 99.14 98.62 98.53 99.38 K jcn_only_AA HLH106,RI_chr3L_19787260_19787323 chr3L + chr3L_19787260_19787323;chr3L_19787260_19787773;chr3L_19787260_19787663 chr3L_19787260_19787998 chr3L_19787254_19787259 90.32 93.10 85.71 91.75 95.24 92.11 78.26 95.10 86.67 NA 85.71 91.11 90.00 90.00 85.00 96.30 91.89 77.14 89.66 92.31 84.21 78.12 92.00 91.30 NA 93.33 93.10 NA 97.14 92.59 86.54 85.19 89.29 87.95 80.00 NA 92.00 NA NA 86.84 NA 90.70 88.89 91.67 NA 96.30 NA 90.32 93.55 NA 88.89 NA NA NA 87.88 NA 86.36 95.24 K intron_retention CG30423 chr2R - chr2R_20763183_20763287 chr2R_20763182_20763183;chr2R_20763287_20763288 chr2R_20763182_20763182;chr2R_20763288_20763359 54.79 NA NA 47.37 NA NA 60.00 76.47 53.33 NA NA 47.06 NA 60.00 46.15 47.83 NA NA 88.89 50.00 NA NA NA NA NA 45.45 NA NA 66.67 NA 36.84 NA NA 60.00 NA NA NA NA NA 41.67 47.06 75.00 NA NA NA 58.82 NA 56.25 65.00 NA NA NA NA NA 50.00 NA NA 72.22 K intron_retention Nup154,I_chr2L_11009331_11009442,I_chr2L_11011380_11011453 chr2L + chr2L_11007432_11007494 chr2L_11007431_11007432;chr2L_11007494_11007495 chr2L_11007192_11007431;chr2L_11007495_11007656 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG9086,CEI_chrX_16859981_16861527,I_chrX_16861895_16862053 chrX - chrX_16861895_16862542 chrX_16861895_16862053 chrX_16861795_16861894;chrX_16862543_16862684 7.32 9.09 3.85 12.00 8.33 5.88 10.53 11.90 9.68 6.25 7.14 6.12 13.79 9.09 7.69 10.91 5.00 9.09 13.79 5.77 5.26 0.00 10.00 12.50 9.09 6.67 6.67 NA 9.09 6.25 7.50 NA NA 6.82 8.70 3.85 5.88 NA 6.67 7.69 NA 10.81 8.70 5.56 NA 6.67 NA 3.85 6.06 NA 4.76 7.69 NA NA 3.85 NA NA NA K alternative_donor Ptp10D,CEF_chrX_11516219_11517862,I_chrX_11516225_11516345 chrX + chrX_11516225_11517785;chrX_11516213_11517785;chrX_11516391_11517785 chrX_11516219_11517785 chrX_11517786_11518234;chrX_11516125_11516212 20.00 NA 25.00 40.00 NA 16.67 0.00 20.00 0.00 NA 0.00 30.00 14.29 28.57 42.86 12.50 33.33 20.00 12.50 20.00 NA NA 37.50 NA NA 40.00 NA NA NA NA 28.57 NA 11.11 33.33 50.00 NA NA NA NA NA NA 15.38 0.00 0.00 NA NA NA 0.00 18.18 NA NA NA NA NA 33.33 NA NA 25.00 K intron_retention CG1599,I_chr2R_5729274_5729347,I_chr2R_5729744_5729805 chr2R - chr2R_5729274_5729351 chr2R_5729273_5729274;chr2R_5729351_5729352 chr2R_5729174_5729273;chr2R_5729352_5729447 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.26 2.33 0.72 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4041 chrX - chrX_4811955_4812153 chrX_4811954_4811955;chrX_4812153_4812154 chrX_4810578_4811954;chrX_4812154_4812606 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 9.68 0.00 0.00 0.00 3.85 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.93 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 10.00 K intron_retention Eip63E,I_chr3L_3607397_3607501 chr3L + chr3L_3515935_3516528 chr3L_3515934_3515935;chr3L_3516528_3516529 chr3L_3515784_3515934;chr3L_3516529_3516828 76.92 87.50 70.97 73.21 64.00 90.62 85.11 91.49 76.32 78.79 62.50 78.18 86.67 77.42 81.58 87.23 73.08 80.00 88.24 83.33 72.73 92.86 70.91 83.33 86.11 81.82 76.74 69.57 70.21 56.10 77.50 79.17 65.00 76.00 81.25 71.79 68.89 80.00 82.46 77.36 78.26 69.84 75.00 73.81 72.73 70.59 75.86 72.13 78.95 77.78 77.36 70.00 67.57 85.00 76.92 73.08 68.00 63.33 K alternative_acceptor CG7414,I_chr3L_21819515_21819581 chr3L + chr3L_21819515_21819581 chr3L_21819515_21819574 chr3L_21819415_21819514;chr3L_21819582_21819681 100.00 100.00 99.01 100.00 100.00 100.00 100.00 100.00 99.44 100.00 98.53 99.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.45 100.00 100.00 100.00 100.00 97.53 100.00 100.00 98.85 100.00 100.00 100.00 98.57 100.00 100.00 99.25 99.47 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.67 99.30 100.00 98.47 100.00 100.00 100.00 100.00 100.00 100.00 99.03 K alternative_acceptor Mbs,I_chr3L_16045251_16046108,I_chr3L_16057100_16057329 chr3L + chr3L_16057100_16057329 chr3L_16057100_16057326 chr3L_16057000_16057099;chr3L_16057330_16057417 97.22 97.14 100.00 94.87 96.00 96.97 97.67 98.08 95.24 96.88 97.06 97.06 97.22 100.00 100.00 96.55 100.00 96.55 96.67 98.57 100.00 98.59 98.21 97.96 96.88 96.77 100.00 100.00 97.06 97.73 92.31 95.65 97.26 93.33 100.00 94.74 94.00 96.77 100.00 100.00 96.88 96.05 96.67 97.50 97.44 96.97 100.00 100.00 98.61 96.55 97.83 96.55 100.00 95.45 100.00 100.00 95.00 97.83 K intron_retention CG8177,I_chr3L_9773534_9773635,I_chr3L_9774319_9774602,I_chr3L_9775004_9775353 chr3L + chr3L_9774319_9775708 chr3L_9774318_9774319;chr3L_9775708_9775709 chr3L_9774219_9774318;chr3L_9775709_9775903 0.00 0.00 4.44 2.63 0.00 0.00 2.86 1.41 1.03 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 2.22 0.00 0.00 0.00 0.00 1.89 6.25 21.74 1.23 0.00 2.22 4.12 0.00 4.00 0.00 3.17 0.00 0.00 1.35 0.00 0.00 0.00 3.08 0.00 1.96 0.00 2.73 0.00 11.76 0.00 6.06 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA noncoding_20684,R_chr4_488962_489782,I_chr4_490841_491639 chr4 + chr4_488621_489782 chr4_488621_489415 chr4_488555_488620;chr4_489783_489860 13.64 NA NA NA NA NA NA NA 13.64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Myb,RI_chrX_15752571_15753225 chrX - chrX_15751579_15751673 chrX_15751578_15751579;chrX_15751673_15751674 chrX_15749823_15751578;chrX_15751674_15751694 32.56 30.00 33.33 53.33 28.26 41.18 42.86 46.61 37.96 10.00 34.29 32.56 26.79 31.34 29.23 28.78 42.50 41.18 50.67 34.21 27.03 20.45 32.08 32.43 34.48 42.86 40.48 42.86 48.72 18.60 30.00 22.22 32.14 38.60 33.33 56.76 17.65 28.12 27.78 36.23 37.14 41.30 44.23 16.33 26.83 17.33 20.69 23.08 35.04 45.45 37.84 29.03 25.81 33.33 30.99 37.93 22.73 25.25 K intron_retention Rab7 chr3R + chr3R_19818784_19819667 chr3R_19818783_19818784;chr3R_19819667_19819668 chr3R_19818732_19818783;chr3R_19819668_19819903 12.50 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K mutually_exclusive Dg chr2R - chr2R_11973126_11974435,chr2R_11975231_11975809 chr2R_11973126_11973549,chr2R_11973799_11975809 chr2R_11974436_11975230 chr2R_11973550_11973798 chr2R_11973069_11973125;chr2R_11975810_11975870 2.63 4.76 4.55 0.00 0.00 11.11 0.00 0.00 2.22 0.00 0.00 10.53 0.00 0.00 4.00 3.23 5.88 5.00 5.56 2.04 0.00 0.00 6.06 4.00 4.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 3.23 4.00 1.15 7.14 4.76 2.78 3.92 0.00 2.63 0.00 6.90 2.94 5.56 7.14 1.89 2.94 0.00 10.00 6.25 0.00 0.00 5.00 8.33 0.00 0.00 K jcn_only_AD RI_chr2R_12650846_12659758,Sod2 chr2R - chr2R_12661144_12661368 chr2R_12661144_12661259 chr2R_12660421_12661143;chr2R_12661369_12661392 100.00 99.47 100.00 98.98 98.75 100.00 98.88 97.37 98.55 99.30 100.00 99.72 100.00 98.71 98.63 100.00 100.00 100.00 100.00 99.10 100.00 100.00 100.00 99.63 100.00 100.00 100.00 100.00 99.39 99.17 99.17 99.49 100.00 99.56 100.00 100.00 99.09 100.00 99.32 100.00 100.00 98.90 100.00 99.38 100.00 100.00 99.53 98.31 100.00 100.00 100.00 100.00 100.00 100.00 99.23 99.10 99.63 100.00 K alternative_acceptor CG12024,REI_chr3L_1857404_1857509 chr3L + chr3L_1857404_1857464;chr3L_1857404_1857512 chr3L_1857404_1857509 chr3L_1857304_1857403;chr3L_1857513_1857609 25.81 33.33 29.17 19.35 25.00 17.39 23.81 40.00 26.23 25.00 30.43 28.07 27.78 31.25 25.81 21.43 22.22 16.00 31.25 27.59 17.39 25.00 21.82 21.57 27.27 23.81 31.25 17.65 18.00 20.37 22.22 17.86 28.17 27.27 37.04 25.64 19.75 28.57 28.85 18.33 18.92 26.00 27.27 22.00 22.22 30.00 28.85 25.71 28.95 31.25 24.49 30.00 20.93 29.41 33.33 25.81 28.57 23.40 K intron_retention ena chr2R + chr2R_15029352_15029711 chr2R_15029351_15029352;chr2R_15029711_15029712 chr2R_15029148_15029351;chr2R_15029712_15029859 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA K intron_retention CycT,I_chr3L_17548631_17550687 chr3L - chr3L_17548631_17549242 chr3L_17548630_17548631;chr3L_17549242_17549243 chr3L_17548531_17548630;chr3L_17549243_17549308 27.96 23.08 NA 50.00 NA NA 15.79 30.77 22.22 NA NA 32.00 NA 35.71 NA 30.00 NA NA 25.00 25.93 NA 14.29 NA NA NA 14.29 25.00 34.78 NA NA 33.33 NA 15.00 33.33 NA 13.33 7.14 NA NA 30.77 NA 30.00 NA NA NA NA NA 21.43 33.33 NA NA NA NA NA 30.77 NA NA NA K intron_retention Cyp311a1 chrX - chrX_11924392_11924444 chrX_11924391_11924392;chrX_11924444_11924445 chrX_11923898_11924391;chrX_11924445_11924794 18.75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 18.75 NA K jcn_only_AA CG6762,I_chrX_17751392_17751499,I_chrX_17751392_17751520 chrX + chrX_17751392_17751505;chrX_17751392_17751524 chrX_17751392_17751535 chrX_17751292_17751391;chrX_17751536_17751560 20.00 NA NA NA NA NA 19.05 10.00 22.50 NA NA NA NA NA NA 40.91 NA NA NA 21.43 NA 13.64 9.09 20.00 NA NA 31.82 10.34 15.00 NA NA 13.64 45.00 NA NA NA 3.70 20.00 17.24 11.90 13.04 37.50 NA NA 40.74 22.50 23.81 30.77 18.52 21.43 23.81 NA 25.00 8.70 NA 7.69 16.13 38.89 K intron_retention Uhg3,noncoding_4006,E_chr2L_20647810_20648188 chr2L + chr2L_20648480_20648784 chr2L_20648479_20648480;chr2L_20648784_20648785 chr2L_20648432_20648479;chr2L_20648785_20648820 20.00 NA NA 15.00 NA 23.08 23.53 42.31 28.57 NA NA 23.53 NA NA NA 16.00 NA NA 15.38 NA NA NA 30.77 12.50 NA NA 28.57 23.53 NA NA 15.38 NA NA 17.65 NA NA NA NA NA 25.00 NA 11.76 NA 33.33 NA 20.00 15.00 NA 22.22 16.00 31.25 17.65 NA 14.29 NA 15.79 14.71 41.67 K jcn_only_AA None chrU - chrU_1097831_1103328 chrU_1097884_1103328 100.00 100.00 NA 100.00 NA 100.00 100.00 98.18 100.00 NA NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 100.00 NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA 96.15 K alternative_acceptor ATPCL,RFI_chr2R_11883823_11884399,I_chr2R_11887476_11888411 chr2R - chr2R_11883820_11884399 chr2R_11883871_11884399 chr2R_11884400_11884499;chr2R_11883723_11883819 100.00 100.00 98.78 100.00 100.00 98.70 98.67 100.00 100.00 100.00 98.59 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 98.65 99.46 99.47 100.00 100.00 98.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.51 100.00 100.00 100.00 100.00 99.26 100.00 100.00 100.00 99.38 100.00 98.73 98.65 98.70 100.00 100.00 100.00 K intron_retention Pect,I_chr2L_13207997_13208109,E_chr2L_13208285_13210076 chr2L + chr2L_13208361_13208420 chr2L_13208360_13208361;chr2L_13208420_13208421 chr2L_13208110_13208360;chr2L_13208421_13208487 0.00 0.51 0.00 0.17 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.23 1.29 0.00 0.19 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rab1,I_chr3R_17093463_17094644,I_chr3R_17094214_17094492,I_chr3R_17099005_17099062 chr3R - chr3R_17094214_17094492 chr3R_17094213_17094214;chr3R_17094492_17094493 chr3R_17094114_17094213;chr3R_17094493_17094592 47.73 NA NA NA NA NA 36.84 69.23 41.67 NA NA 50.00 NA NA NA 45.45 NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 53.33 NA NA NA NA NA NA 38.46 NA NA NA NA NA NA NA NA NA K intron_retention CG42507,Trl,I_chr3L_14745733_14745798,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14745733_14745798 chr3L_14745732_14745733;chr3L_14745798_14745799 chr3L_14745664_14745732;chr3L_14745799_14745836 93.75 80.00 91.67 85.19 NA 100.00 100.00 94.87 91.67 NA NA 100.00 86.21 93.75 NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 92.86 100.00 NA 90.00 NA NA 100.00 NA 100.00 NA 92.59 88.89 NA NA NA NA 88.89 87.50 100.00 100.00 90.00 NA 93.75 91.67 87.50 100.00 85.71 93.75 90.91 NA NA 100.00 84.62 100.00 95.45 K intron_retention CG4119 chrX + chrX_5560347_5560409 chrX_5560346_5560347;chrX_5560409_5560410 chrX_5560114_5560346;chrX_5560410_5560501 52.54 38.00 63.64 69.57 57.14 63.64 69.57 65.38 58.33 37.04 60.71 50.00 68.18 47.83 73.91 68.18 52.00 53.33 60.87 52.17 56.52 40.74 57.14 37.25 51.22 83.33 52.08 45.45 79.07 51.92 60.87 35.29 56.36 57.50 40.00 67.44 39.36 38.81 36.67 44.83 55.88 53.33 66.67 33.33 39.02 54.05 45.95 52.54 64.29 41.86 44.78 42.42 35.29 37.50 54.29 39.13 42.86 60.00 K jcn_only_AD opa1-like,I_chr2R_10119470_10120234,I_chr2R_10121848_10121900,I_chr2R_10122128_10122197,I_chr2R_10122334_10122393 chr2R - chr2R_10119470_10120220;chr2R_10119470_10120229 chr2R_10119470_10120234 chr2R_10119370_10119469;chr2R_10120235_10120334 0.00 0.00 0.93 0.44 0.76 0.00 1.00 1.09 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.50 0.00 0.60 1.00 0.00 0.99 1.78 0.00 0.00 0.55 0.00 0.83 0.41 0.00 0.00 0.00 3.82 0.40 0.00 1.16 1.16 1.68 0.59 1.41 0.00 0.00 1.15 0.00 0.00 0.00 0.67 0.66 0.00 0.00 K intron_retention CG31522,I_chr3R_270285_272146,I_chr3R_270285_272461,I_chr3R_271138_271887,I_chr3R_272255_272359,RI_chr3R_273677_279264 chr3R - chr3R_270285_271053 chr3R_270284_270285;chr3R_271053_271054 chr3R_270228_270284;chr3R_271054_271137 0.00 0.00 0.00 3.92 0.00 0.00 6.25 3.57 8.47 NA NA 0.00 NA 0.00 0.00 4.88 0.00 5.88 0.00 5.56 NA 6.67 7.32 0.00 0.00 0.00 0.00 NA NA 7.41 5.71 NA 0.00 3.64 NA 25.00 2.38 0.00 0.00 0.00 NA 6.56 0.00 3.33 NA 0.00 0.00 NA 8.70 0.00 0.00 0.00 0.00 0.00 0.00 7.41 0.00 5.00 K jcn_only_AA fs(1)h,RI_chrX_7949952_7949999,I_chrX_7950171_7952371,I_chrX_7954192_7955240 chrX - chrX_7949927_7949999 chrX_7949952_7949999 chrX_7950000_7950099;chrX_7949852_7949926 3.66 0.00 1.47 4.55 2.70 5.08 4.76 2.96 3.62 4.88 5.26 1.75 6.33 3.08 4.71 3.85 3.17 2.90 2.67 4.90 3.70 3.08 3.70 5.00 8.82 5.33 2.22 6.12 5.66 5.88 2.60 NA 1.03 2.07 6.12 2.90 2.50 0.00 0.00 5.56 3.03 5.19 8.20 3.57 NA 6.06 NA 0.96 4.17 NA 5.08 2.44 2.86 NA 5.95 NA NA 0.00 K intron_retention CG6459,RI_chr2R_13565425_13565874 chr2R - chr2R_13559312_13559369 chr2R_13559311_13559312;chr2R_13559369_13559370 chr2R_13558812_13559311;chr2R_13559370_13559714 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Crk,RI_chr4_231302_233315,I_chr4_231307_232253 chr4 + chr4_233356_233416 chr4_233355_233356;chr4_233416_233417 chr4_233316_233355;chr4_233417_233734 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.35 0.00 5.06 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG17508,RI_chr2R_1496995_1497120 chr2R + chr2R_1496288_1496517;chr2R_1496341_1496517;chr2R_1496303_1496517 chr2R_1496337_1496517 chr2R_1496518_1496994;chr2R_1496153_1496287 0.00 0.00 0.00 1.18 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 1.02 2.70 4.35 0.00 1.33 0.00 0.92 0.45 0.00 2.15 0.00 0.00 0.00 3.09 1.39 0.00 0.00 0.00 0.00 0.89 0.00 1.56 0.00 0.00 0.00 1.32 2.38 1.33 0.00 0.00 0.92 0.81 K jcn_only_AD CG2177,I_chr4_334269_334329,I_chr4_334269_334505,I_chr4_334439_334505 chr4 - chr4_334269_334329;chr4_334269_334324 chr4_334269_334373 chr4_334169_334268;chr4_334374_334429 88.35 90.16 87.18 89.12 92.11 89.25 61.31 83.26 78.62 96.30 78.69 91.67 87.96 92.39 87.58 87.83 84.85 90.48 89.47 89.38 87.23 93.83 83.67 85.14 84.62 88.62 95.59 95.35 90.99 94.05 75.17 94.06 86.00 87.57 90.77 97.00 80.65 83.33 88.14 90.30 88.35 81.62 82.47 89.29 95.79 83.57 81.63 90.58 91.39 84.78 85.71 90.70 88.06 87.69 83.94 89.06 89.29 95.40 K alternative_donor CG16791 chr3R - chr3R_17149949_17160425 chr3R_17149949_17160248 chr3R_17149943_17149948;chr3R_17160426_17160490 97.56 95.45 95.00 89.19 100.00 100.00 100.00 94.87 97.56 94.12 100.00 97.44 100.00 100.00 100.00 100.00 95.24 100.00 100.00 97.83 100.00 91.67 100.00 90.91 100.00 100.00 95.65 100.00 90.00 92.31 100.00 100.00 100.00 97.30 93.33 100.00 100.00 93.33 100.00 86.67 100.00 90.24 95.00 100.00 94.12 100.00 93.75 100.00 95.35 94.12 96.15 100.00 93.75 92.86 96.15 94.44 92.86 100.00 K jcn_only_AD CG10992,RI_chrX_13675767_13676018 chrX - chrX_13675767_13675872;chrX_13675767_13676018 chrX_13675767_13675842 chrX_13675699_13675766;chrX_13676019_13676118 99.87 100.00 100.00 99.87 99.84 99.82 99.88 100.00 99.87 100.00 100.00 99.81 99.29 100.00 100.00 100.00 100.00 99.60 100.00 100.00 100.00 99.77 99.86 99.72 99.77 100.00 99.76 100.00 100.00 99.45 99.60 100.00 99.78 100.00 99.79 100.00 99.75 99.82 99.86 99.48 100.00 100.00 100.00 100.00 99.75 100.00 99.83 99.61 99.90 100.00 99.63 99.58 100.00 99.56 99.71 99.78 100.00 99.36 K multi_cassette scrib,I_chr3R_22381374_22399575,I_chr3R_22394393_22399130,I_chr3R_22394407_22399145,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22381374_22399575 chr3R_22381374_22381935;chr3R_22382011_22392082;chr3R_22392298_22392645;chr3R_22392949_22393009;chr3R_22393090_22393198;chr3R_22393468_22399575 chr3R_22381936_22382010;chr3R_22392083_22392297;chr3R_22392646_22392948;chr3R_22393010_22393089;chr3R_22393199_22393467 chr3R_22381305_22381373;chr3R_22399576_22399605 100.00 100.00 100.00 100.00 94.74 100.00 100.00 96.88 100.00 100.00 100.00 97.56 94.74 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Dif,I_chr2L_17414333_17414528,I_chr2L_17414576_17415280,I_chr2L_17418395_17418487 chr2L - chr2L_17414333_17415280 chr2L_17414332_17414333;chr2L_17415280_17415281 chr2L_17414233_17414332;chr2L_17415281_17415380 6.79 9.09 6.90 25.93 0.00 7.41 15.79 4.17 6.38 NA 5.56 11.76 4.17 11.54 5.41 11.11 16.67 25.93 8.33 3.17 0.00 23.81 6.90 4.76 NA 20.00 0.00 6.67 5.88 0.00 7.41 0.00 0.00 4.44 12.50 19.05 0.00 NA 0.00 13.64 14.29 11.11 10.53 6.67 14.29 0.00 NA 7.41 7.32 5.00 6.90 NA 6.25 NA 6.06 NA 0.00 0.00 K multi_cassette cals,I_chr4_1139644_1142084,RI_chr4_1141233_1142084 chr4 - chr4_1139644_1142084 chr4_1139644_1140562;chr4_1140674_1140731;chr4_1141233_1142084 chr4_1140563_1140673;chr4_1140732_1141232 chr4_1139544_1139643;chr4_1142085_1142184 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 93.33 100.00 96.30 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 33.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 K mutually_exclusive lqf,I_chr3L_7522287_7522807 chr3L + chr3L_7528745_7529810,chr3L_7529870_7530075 chr3L_7528745_7528983,chr3L_7529536_7530075 chr3L_7529811_7529869 chr3L_7528984_7529535 chr3L_7528643_7528744;chr3L_7530076_7530479 33.33 36.36 38.46 38.89 28.57 16.67 53.33 36.84 38.46 21.43 66.67 51.72 27.27 44.44 28.57 37.50 37.50 26.67 30.00 36.00 53.33 12.50 29.17 21.05 25.00 45.45 27.78 66.67 62.50 33.33 25.81 25.00 33.33 42.11 33.33 52.94 38.89 40.00 20.00 81.82 20.00 33.33 30.00 38.10 37.50 31.82 27.78 44.44 38.10 20.00 25.00 22.22 50.00 27.27 29.41 30.77 41.67 46.67 N jcn_only_AD ATPsyn-Cf6,I_chr3R_19181508_19181563,I_chr3R_19181524_19181702 chr3R - chr3R_19181508_19181584;chr3R_19181508_19183230 chr3R_19181508_19181702 chr3R_19181424_19181507;chr3R_19183231_19184049 97.77 98.94 98.73 97.15 98.81 98.58 97.31 98.55 98.34 96.95 98.28 98.51 97.22 98.82 98.76 99.10 99.07 97.23 97.77 98.94 98.13 97.56 96.70 97.65 93.60 96.13 94.61 98.61 93.97 96.67 97.63 99.13 98.33 98.72 96.86 97.01 97.48 97.31 94.58 93.01 99.47 99.30 98.13 96.30 98.71 93.87 98.43 98.01 98.84 95.85 95.68 95.98 97.59 97.30 98.68 98.17 96.80 98.72 K jcn_only_AD CG34123,I_chr2R_11159045_11159622,RI_chr2R_11160894_11162043,I_chr2R_11167854_11168411 chr2R - chr2R_11154968_11155346 chr2R_11154968_11155310 chr2R_11154735_11154967;chr2R_11155347_11155470 11.11 12.50 8.82 6.78 12.50 8.57 20.69 5.56 12.15 12.50 7.69 21.28 16.67 11.76 7.50 6.90 0.00 10.64 15.62 15.28 7.41 58.90 1.89 5.66 12.00 8.11 8.77 NA 11.76 11.11 15.38 10.81 20.51 9.09 9.38 48.65 3.57 11.11 6.78 12.50 32.14 5.68 NA 9.76 45.00 7.50 11.11 20.75 12.05 15.56 11.67 9.38 13.51 14.29 3.28 11.54 7.69 13.95 N alternative_acceptor CG18228 chr3R - chr3R_4087322_4087522;chr3R_4087428_4087522 chr3R_4087273_4087522 chr3R_4087523_4087669;chr3R_4087045_4087272 45.00 39.29 58.14 36.00 57.14 45.16 40.00 52.56 51.04 14.29 25.00 50.00 50.94 60.87 38.71 57.76 34.48 45.45 38.00 33.33 45.00 62.50 42.86 53.85 30.77 31.25 52.17 57.14 16.67 50.00 49.06 36.84 26.67 38.57 48.00 50.00 53.85 50.00 38.46 37.93 11.11 41.79 55.00 52.63 33.33 39.02 60.00 35.71 45.05 51.35 47.37 48.15 42.86 40.91 44.74 39.13 51.35 37.50 K alternative_donor gus,I_chr2R_1009158_1009345,RI_chr2R_1009158_1011540,I_chr2R_1009346_1015730 chr2R - chr2R_1009158_1009273;chr2R_1009158_1009277 chr2R_1009158_1009241 chr2R_1009058_1009157;chr2R_1009278_1009300 54.55 NA NA 50.00 NA NA NA 54.55 60.00 NA NA 50.00 66.67 NA NA 41.67 NA NA NA 28.57 NA NA NA 33.33 NA NA NA NA NA NA NA NA NA 69.23 NA NA NA NA NA NA NA 71.43 80.00 NA NA NA NA NA 57.14 NA NA NA NA NA NA NA NA 22.22 K alternative_donor CG1578,RI_chrX_11709573_11709680,I_chrX_11709573_11710263,RI_chrX_11709573_11710335,noncoding_23225,I_chrX_11710380_11710454 chrX - chrX_11709573_11709680;chrX_11709573_11710335;chrX_11709573_11710454;chrX_11709573_11710263 chrX_11709573_11710458 chrX_11709473_11709572;chrX_11710459_11710479 10.00 11.11 0.00 5.88 0.00 16.67 16.67 5.26 6.67 0.00 20.00 5.88 0.00 0.00 18.18 0.00 20.00 14.29 12.50 4.76 11.11 12.50 5.56 20.00 11.11 12.50 0.00 0.00 9.09 14.29 11.11 0.00 0.00 17.65 20.00 0.00 11.11 10.00 0.00 6.25 0.00 15.00 0.00 6.25 28.57 20.00 0.00 8.33 13.04 16.67 9.09 11.11 14.29 0.00 16.67 14.29 12.50 0.00 N mutually_exclusive dpr3 chr2L - chr2L_2059984_2065610,chr2L_2065744_2066519 chr2L_2059984_2061974,chr2L_2062300_2066519 chr2L_2065611_2065743 chr2L_2061975_2062299 chr2L_2058819_2059983;chr2L_2066520_2066597 9.92 NA NA 5.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG5973,I_chr2L_7441485_7443583,I_chr2L_7443388_7443583 chr2L + chr2L_7440852_7443583;chr2L_7441757_7443583;chr2L_7440959_7443583 chr2L_7440963_7443583 chr2L_7443584_7443683;chr2L_7440710_7440851 23.53 29.41 17.39 21.43 25.00 30.00 20.00 18.97 24.73 22.22 22.03 25.00 14.29 24.00 32.35 23.21 17.24 23.53 20.00 27.00 23.91 11.11 31.82 40.00 14.29 22.22 20.00 20.00 33.33 28.57 30.00 20.00 25.00 24.32 14.29 30.77 31.82 0.00 15.38 23.53 NA 25.64 24.00 20.00 33.33 13.33 10.00 30.77 26.56 28.57 27.27 28.57 28.57 18.18 18.92 22.22 20.00 15.38 K jcn_only_AD Sans,RI_chr2R_8825985_8826072,I_chr2R_8826501_8826591 chr2R + chr2R_8825981_8826072 chr2R_8825985_8826072 chr2R_8826073_8826172;chr2R_8825905_8825980 9.64 NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG3589 chr2R + chr2R_20672104_20672156 chr2R_20672103_20672104;chr2R_20672156_20672157 chr2R_20671940_20672103;chr2R_20672157_20672266 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 3.23 0.00 0.00 0.00 0.00 0.00 11.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8088454_8105691 chr2L_8088454_8089356;chr2L_8089737_8105691 chr2L_8089357_8089736 chr2L_8088448_8088453;chr2L_8105692_8105782 100.00 100.00 100.00 99.87 100.00 100.00 100.00 100.00 99.91 100.00 100.00 99.86 99.79 100.00 99.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.69 100.00 100.00 100.00 99.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.41 100.00 99.37 99.77 99.88 100.00 100.00 100.00 100.00 99.16 100.00 100.00 100.00 100.00 K cassette enc chr3L + chr3L_3833671_3836021 chr3L_3833671_3834270;chr3L_3834628_3836021 chr3L_3834271_3834627 chr3L_3833456_3833670;chr3L_3836022_3836934 9.09 11.63 10.00 5.08 8.11 12.12 13.51 10.91 11.11 6.98 5.56 20.83 2.94 12.50 8.51 21.88 9.09 6.25 13.33 11.84 5.71 6.82 8.74 9.09 8.16 9.09 9.84 8.93 8.06 10.00 9.68 15.38 15.87 11.32 7.55 22.03 8.91 7.50 10.59 9.30 13.95 9.21 15.62 8.20 13.21 8.82 8.33 9.72 7.89 8.11 9.86 9.52 5.71 4.00 11.54 8.11 3.03 8.51 K jcn_only_AD Ucp4A chrX + chrX_17739432_17739522;chrX_17739394_17739522;chrX_17739454_17739522 chrX_17739458_17739522 chrX_17739523_17739558;chrX_17739094_17739393 0.00 0.00 0.00 NA NA NA 0.00 4.35 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.13 0.00 2.63 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 5.13 0.00 0.00 1.72 0.00 0.00 2.70 0.00 0.00 0.00 NA K intron_retention CG4389,I_chr2L_9576230_9576665 chr2L - chr2L_9576230_9576517 chr2L_9576229_9576230;chr2L_9576517_9576518 chr2L_9576130_9576229;chr2L_9576518_9576757 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 1.63 0.00 0.00 0.00 1.35 0.00 7.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 N jcn_only_AA Moe,I_chrX_8774434_8791759 chrX - chrX_8785657_8792216;chrX_8774434_8792216 chrX_8791324_8792216 chrX_8792217_8792259 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 19.51 0.00 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K alternative_donor 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5987603_5991760,I_chr2R_5988662_5991760,I_chr2R_5988666_5991760,I_chr2R_5988919_5991760,I_chr2R_5988931_5991760,I_chr2R_5990647_5991760,I_chr2R_5991249_5991760,I_chr2R_5991689_5991760,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5987356_5991760;chr2R_5987244_5991760 chr2R_5987237_5991760 chr2R_5991761_5991860;chr2R_5987235_5987236 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.48 0.00 0.00 0.25 0.00 0.56 0.35 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 1.10 0.00 1.10 0.00 0.21 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG7861 chr2R + chr2R_1931877_1931938 chr2R_1931884_1931938 chr2R_1931939_1932469;chr2R_1931601_1931876 100.00 100.00 98.65 100.00 100.00 100.00 98.82 98.99 100.00 100.00 100.00 99.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.00 100.00 100.00 98.80 98.04 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.25 100.00 98.90 100.00 98.06 99.24 100.00 98.25 100.00 99.57 98.68 100.00 99.09 100.00 98.89 100.00 100.00 100.00 100.00 98.90 100.00 98.39 K intron_retention CG3760,CG3770,CG12851 chr2R + chr2R_20826197_20826282 chr2R_20826196_20826197;chr2R_20826282_20826283 chr2R_20825910_20826196;chr2R_20826283_20826365 1.01 1.94 0.00 1.48 0.95 0.00 2.30 1.38 1.41 0.00 0.00 1.06 0.00 0.00 2.56 0.00 0.00 0.00 0.00 2.29 0.00 6.74 2.01 1.26 0.00 1.83 3.70 2.22 8.54 0.00 5.31 0.93 0.96 0.78 1.82 2.25 0.67 0.00 0.00 2.04 5.47 0.86 1.01 0.00 0.53 1.09 1.48 1.47 0.86 0.94 1.28 0.00 1.86 0.67 0.00 2.01 1.11 1.45 K jcn_only_AD Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4833364_4834454;chrX_4833203_4834454;chrX_4833308_4834454;chrX_4833338_4834454 chrX_4833234_4834454 chrX_4834455_4834880;chrX_4833197_4833202 69.58 NA 59.09 83.78 57.14 NA 79.17 80.49 72.73 62.50 NA 66.67 73.08 64.71 NA 59.38 71.88 NA 60.00 78.43 NA 68.18 NA NA NA NA NA NA NA 70.97 62.50 NA 72.88 68.18 NA NA NA NA NA NA NA 91.89 59.09 NA NA NA NA 74.19 62.22 NA NA NA NA NA 76.19 NA NA NA K cassette arm,I_chrX_1790787_1794076,I_chrX_1793073_1793336,I_chrX_1793073_1793350,I_chrX_1793073_1793389,I_chrX_1793073_1793734,I_chrX_1793073_1794406,RI_chrX_1795648_1795745,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1790787_1794542;chrX_1790787_1794076 chrX_1790787_1793012;chrX_1793073_1794542,chrX_1793073_1794076 chrX_1793013_1793072 chrX_1790687_1790786;chrX_1794543_1794636 99.46 100.00 99.46 99.64 99.25 99.27 98.27 99.66 99.73 99.19 100.00 99.69 99.33 100.00 99.47 99.60 99.22 100.00 100.00 100.00 99.31 99.13 99.58 99.09 96.75 97.65 98.50 99.32 97.22 100.00 99.35 100.00 100.00 99.63 99.37 98.86 99.67 99.50 100.00 100.00 97.64 100.00 100.00 98.57 100.00 99.44 100.00 99.45 100.00 99.33 99.11 99.36 100.00 100.00 99.13 99.41 99.34 99.41 K alternative_acceptor CG9172,eIF5,EI_chrX_15885411_15885854 chrX - chrX_15880717_15880770 chrX_15880720_15880770 chrX_15880771_15880778;chrX_15879877_15880716 30.23 27.66 31.48 30.59 26.53 22.03 34.94 33.33 26.79 26.47 25.86 29.87 25.53 33.33 38.98 29.41 34.78 31.91 32.14 34.06 30.23 19.57 25.00 26.32 20.00 38.30 36.36 46.15 34.21 37.04 40.43 26.83 28.12 29.55 34.48 40.00 37.50 34.48 27.27 25.00 30.23 30.10 25.00 25.71 32.89 35.29 30.77 35.29 33.33 22.86 30.00 23.33 18.92 33.33 26.25 20.00 24.59 34.57 K alternative_acceptor Fur1,I_chr3R_21179328_21179393,I_chr3R_21179590_21179870,CEI_chr3R_21210600_21222433,I_chr3R_21257704_21287086 chr3R - chr3R_21177936_21179870;chr3R_21179590_21179870 chr3R_21177915_21179870 chr3R_21179871_21179970;chr3R_21177839_21177914 98.97 100.00 97.56 100.00 100.00 100.00 98.08 98.18 99.14 100.00 86.21 98.02 100.00 100.00 100.00 97.56 100.00 98.00 100.00 99.15 96.88 98.90 98.81 98.48 98.53 100.00 98.31 90.32 98.97 100.00 98.18 100.00 98.97 98.77 98.48 100.00 98.97 98.21 99.21 99.10 98.44 99.21 100.00 99.07 99.23 99.21 98.53 99.38 98.95 98.18 98.88 100.00 100.00 98.53 98.25 98.18 100.00 99.29 K intron_retention CG7375 chr3L - chr3L_8190806_8190878 chr3L_8190805_8190806;chr3L_8190878_8190879 chr3L_8190622_8190805;chr3L_8190879_8190964 28.29 NA NA 31.58 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA 25.00 NA 82.35 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27761114_27762991,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27707594_27801169 chr3R_27707594_27747354;chr3R_27747397_27784756;chr3R_27784850_27798223;chr3R_27798276_27801169 chr3R_27747355_27747396;chr3R_27784757_27784849;chr3R_27798224_27798275 chr3R_27707494_27707593;chr3R_27801170_27801219 80.00 NA NA NA 100.00 NA 100.00 100.00 NA NA NA 75.00 75.00 NA 100.00 NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA 75.00 NA NA NA K alternative_acceptor Dcp2,F_chr3L_15815909_15816023,F_chr3L_15817090_15817547 chr3L - chr3L_15815112_15815170 chr3L_15815115_15815170 chr3L_15815171_15815908;chr3L_15814221_15815111 12.77 16.42 10.34 15.52 17.31 14.29 11.61 11.50 12.12 14.29 14.04 13.51 11.86 13.64 12.20 13.73 12.68 11.36 9.46 15.38 12.00 15.79 15.84 10.00 17.65 11.69 11.70 15.52 33.33 18.18 8.82 17.65 20.45 9.90 18.87 15.38 9.30 16.95 12.36 9.46 11.76 11.97 10.34 9.23 17.24 14.29 11.32 15.38 10.13 11.76 14.89 12.77 12.00 9.09 13.58 7.50 15.15 17.65 K intron_retention RpL18 chr3L - chr3L_7233878_7233954 chr3L_7233877_7233878;chr3L_7233954_7233955 chr3L_7233294_7233877;chr3L_7233955_7234041 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention lolal,I_chr2R_14043671_14043736,I_chr2R_14043671_14043740,I_chr2R_14043671_14043901,RI_chr2R_14043671_14044082,I_chr2R_14043671_14044191,I_chr2R_14043671_14044461,I_chr2R_14043671_14045289,I_chr2R_14043671_14045344 chr2R - chr2R_14043671_14044074 chr2R_14043670_14043671;chr2R_14044074_14044075 chr2R_14043571_14043670;chr2R_14044075_14044258 78.95 90.91 88.89 81.25 77.78 NA NA 75.00 65.00 NA NA 92.31 NA 80.00 90.00 88.89 90.00 NA 69.23 77.78 NA 91.67 70.00 63.64 NA NA NA NA NA 88.89 72.73 NA NA 100.00 NA NA NA NA NA 92.86 NA 78.95 63.64 100.00 NA NA NA NA 78.95 60.00 75.00 NA NA NA 91.67 70.00 72.73 NA K jcn_only_AD sta chrX - chrX_1376949_1377290;chrX_1376949_1377164 chrX_1376949_1377143 chrX_1376851_1376948;chrX_1377291_1377379 0.10 0.16 0.19 0.07 0.03 0.11 0.10 0.06 0.16 0.06 0.07 0.05 0.00 0.13 0.06 0.07 0.00 0.08 0.09 0.10 0.03 0.13 0.35 0.68 0.00 0.07 0.43 0.08 0.20 0.15 0.46 0.07 0.05 0.05 0.60 0.30 0.23 0.40 0.16 0.02 0.05 0.01 0.10 0.02 0.09 0.11 0.45 0.04 0.13 0.31 0.80 0.21 0.11 2.20 0.16 0.33 0.39 0.00 K intron_retention RpL15 chr3LHet + chr3LHet_2397925_2398127 chr3LHet_2397924_2397925;chr3LHet_2398127_2398128 chr3LHet_2397802_2397924;chr3LHet_2398128_2398454 100.00 100.00 100.00 99.81 99.32 100.00 99.85 99.71 100.00 100.00 100.00 99.69 100.00 99.50 100.00 100.00 99.44 99.10 99.46 99.70 100.00 100.00 100.00 99.02 99.13 99.32 96.59 100.00 99.16 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.98 100.00 99.32 100.00 100.00 100.00 99.11 99.18 99.06 100.00 98.85 98.95 100.00 100.00 100.00 100.00 99.45 100.00 K intron_retention tra chr3L - chr3L_16583395_16583451 chr3L_16583394_16583395;chr3L_16583451_16583452 chr3L_16583032_16583394;chr3L_16583452_16583855 0.00 0.00 0.00 0.00 NA NA 11.11 0.00 3.45 0.00 0.00 5.88 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 2.27 5.00 12.50 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 8.70 0.00 NA 0.00 0.00 2.13 5.41 0.00 0.00 3.51 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention endos,I_chr3L_14024099_14024488,I_chr3L_14024103_14024158,I_chr3L_14024103_14024546,noncoding_12505,I_chr3L_14024496_14024546 chr3L - chr3L_14024158_14024488 chr3L_14024157_14024158;chr3L_14024488_14024489 chr3L_14024105_14024157;chr3L_14024489_14024495 57.14 NA NA 45.45 NA NA 42.86 30.77 61.54 63.64 NA 28.57 NA NA NA 60.00 NA NA NA 55.56 NA 62.50 NA NA 77.78 27.78 NA 83.33 83.33 NA NA 47.06 60.00 54.55 NA 37.50 NA NA NA 66.67 63.16 57.14 NA 66.67 42.86 42.86 NA 48.15 73.33 60.00 NA NA NA 60.00 45.45 NA NA 42.31 K jcn_only_AD RpL27,I_chr3R_21510239_21510298,RI_chr3R_21510239_21510441,I_chr3R_21510239_21510464,I_chr3R_21510239_21510656,I_chr3R_21510239_21510726 chr3R - chr3R_21510239_21510464;chr3R_21510239_21510656;chr3R_21510239_21510739;chr3R_21510239_21510298;chr3R_21510239_21510746 chr3R_21510239_21510680 chr3R_21510139_21510238;chr3R_21510747_21510756 19.70 24.14 25.00 11.45 6.12 12.50 38.89 15.32 24.72 20.00 20.83 15.71 17.86 25.00 14.42 34.15 12.77 17.78 6.59 21.05 19.70 2.50 56.52 26.09 29.27 10.13 50.00 44.12 41.41 12.96 7.62 16.42 11.58 15.60 33.33 34.29 23.94 27.78 26.79 7.21 21.13 6.13 10.42 17.46 13.04 22.54 24.00 12.90 7.55 16.36 42.31 32.56 11.93 57.14 8.51 26.92 20.00 13.11 K jcn_only_AA CG33087,EI_chr2R_4062337_4074409 chr2R + chr2R_4102730_4102804 chr2R_4102730_4102789 chr2R_4101973_4102729;chr2R_4102805_4103085 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 98.36 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817,snoRNA:Psi28S-2444 chr2R + chr2R_15330246_15330305 chr2R_15330245_15330246;chr2R_15330305_15330306 chr2R_15330177_15330245;chr2R_15330306_15330383 0.03 0.00 0.02 0.06 0.03 0.04 0.05 0.09 0.03 0.00 0.02 0.03 0.03 0.09 0.03 0.03 0.00 0.00 0.00 0.05 0.04 0.07 0.01 0.03 0.14 0.05 0.04 0.23 0.59 0.08 0.03 0.00 0.00 0.00 0.00 0.04 0.01 0.05 0.04 0.03 0.08 0.03 0.00 0.00 0.03 0.05 0.05 0.06 0.06 0.03 0.06 0.03 0.04 0.03 0.00 0.01 0.02 0.13 K intron_retention Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3294642 chr2R_3294565_3294566;chr2R_3294642_3294643 chr2R_3294491_3294565;chr2R_3294643_3294736 58.72 53.85 46.67 93.94 58.33 43.75 64.71 75.00 58.62 NA 60.00 54.84 41.67 69.23 58.82 78.26 69.23 66.67 53.33 57.14 72.73 60.00 59.09 68.42 56.25 61.11 60.00 57.89 57.89 63.16 47.06 66.67 45.16 52.63 63.64 89.47 45.83 60.00 62.50 48.65 68.42 54.55 NA 55.56 31.58 50.00 46.15 68.00 56.52 60.00 58.82 46.67 40.00 NA 58.82 61.54 43.75 36.36 K alternative_donor alt,I_chr3R_13503901_13504925,RI_chr3R_13503901_13505368,I_chr3R_13503901_13507824 chr3R - chr3R_13503901_13507816;chr3R_13503901_13508178;chr3R_13503901_13508180 chr3R_13503901_13508123 chr3R_13503801_13503900;chr3R_13508181_13508234 6.06 5.56 3.03 8.06 4.00 3.85 9.76 7.58 6.94 14.29 11.76 4.08 4.76 3.85 2.86 6.82 4.00 2.56 6.25 6.94 11.43 7.69 0.00 9.09 11.11 5.26 8.33 9.09 20.00 11.11 4.55 0.00 18.18 3.77 0.00 16.67 8.33 0.00 8.33 5.88 20.00 7.14 3.57 11.11 0.00 0.00 0.00 0.00 2.86 8.33 9.09 0.00 0.00 NA 2.70 14.29 7.14 0.00 K intron_retention I_chr3L_21265768_21265914,ppl chr3L - chr3L_21274230_21274284 chr3L_21274229_21274230;chr3L_21274284_21274285 chr3L_21273951_21274229;chr3L_21274285_21274718 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 11.11 0.00 0.00 NA 0.00 0.00 NA 6.25 0.00 4.26 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 5.88 0.00 0.00 0.00 0.00 NA 0.00 5.26 0.00 0.00 0.00 0.00 6.25 5.00 NA 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon CG34449,I_chrX_9222628_9227416,RI_chrX_9232665_9233022,RI_chrX_9249212_9250033,RI_chrX_9249212_9250244 chrX - chrX_9222628_9226486 chrX_9225512_9226486 chrX_9222386_9222627 chrX_9225380_9225511 chrX_9226487_9226732 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3214,I_chr2L_2580071_2580139,Drp1 chr2L - chr2L_2579956_2580014 chr2L_2579955_2579956;chr2L_2580014_2580015 chr2L_2579860_2579955;chr2L_2580015_2580070 26.67 38.46 NA 46.88 16.67 NA 36.67 17.24 23.26 NA 35.71 20.69 NA NA 21.05 15.00 26.67 NA 26.67 12.50 33.33 NA 50.00 NA NA 63.16 NA NA 66.67 NA 21.43 NA NA 26.09 NA NA 35.29 NA 30.77 NA 50.00 12.50 NA NA 28.57 NA 35.71 NA 18.52 NA NA NA NA NA 23.81 NA 21.74 NA K intron_retention PTP-ER chr2R - chr2R_17508779_17508835 chr2R_17508778_17508779;chr2R_17508835_17508836 chr2R_17506727_17508778;chr2R_17508836_17512049 0.00 NA 0.00 7.32 0.00 0.00 0.00 0.00 2.94 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 6.00 6.67 0.00 0.00 0.00 0.00 0.00 13.16 9.09 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG3125,I_chrX_5637946_5638135,I_chrX_5637946_5641134,I_chrX_5656715_5657974 chrX - chrX_5637946_5640804 chrX_5637946_5638388 chrX_5637846_5637945;chrX_5640805_5640900 96.00 NA NA 90.24 80.00 NA 100.00 95.00 100.00 NA NA 92.50 NA 100.00 100.00 95.24 90.48 NA 96.00 95.83 NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 100.00 NA NA 90.91 NA NA 100.00 NA 93.94 100.00 95.00 NA NA NA 97.30 95.24 NA NA NA NA NA 96.00 NA NA 89.66 K intron_retention smaug,I_chr3L_8984539_8985552,I_chr3L_8984656_8985552,I_chr3L_8988666_8990825 chr3L - chr3L_8984638_8985552 chr3L_8984637_8984638;chr3L_8985552_8985553 chr3L_8984569_8984637;chr3L_8985553_8985652 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 94.12 100.00 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG4860 chr3R - chr3R_8047078_8047138 chr3R_8047077_8047078;chr3R_8047138_8047139 chr3R_8046838_8047077;chr3R_8047139_8047225 2.79 0.00 0.00 0.00 3.12 0.00 3.45 0.00 2.90 2.22 0.00 3.33 0.00 3.12 3.39 0.00 0.00 0.00 8.33 1.75 0.00 7.32 5.41 5.41 6.67 0.00 7.14 13.33 7.44 1.52 0.00 1.69 2.69 5.66 4.88 5.63 2.50 0.00 5.00 3.57 4.79 1.75 0.00 1.32 3.17 3.08 8.33 3.51 0.00 0.00 13.79 5.71 6.78 NA 0.00 0.00 0.00 4.06 K intron_retention Dlic chrX + chrX_11048724_11049066 chrX_11048723_11048724;chrX_11049066_11049067 chrX_11048434_11048723;chrX_11049067_11049261 98.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N multi_cassette CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525704_1527189 chr3L_1525704_1526333;chr3L_1526399_1526659;chr3L_1526732_1527189 chr3L_1526334_1526398;chr3L_1526660_1526731 chr3L_1525642_1525703;chr3L_1527190_1527240 6.67 NA NA 0.00 NA NA 0.00 NA 4.55 NA NA 65.22 NA NA NA NA NA NA NA 12.00 22.22 NA 3.70 6.67 NA NA NA NA NA NA NA NA NA 7.69 NA NA 11.76 NA NA 12.50 NA 5.00 NA NA NA NA NA 7.69 4.35 NA 4.76 NA 15.38 NA 7.69 5.88 5.56 NA K intron_retention CG32425,I_chr3L_20490581_20505036,I_chr3L_20502617_20503129,I_chr3L_20503880_20503985,I_chr3L_20504930_20505036 chr3L + chr3L_20503880_20505036 chr3L_20503879_20503880;chr3L_20505036_20505037 chr3L_20503780_20503879;chr3L_20505037_20505136 66.67 83.33 52.94 65.62 58.82 50.00 80.00 78.26 73.17 69.23 53.85 66.67 87.50 69.23 62.50 86.67 66.67 69.23 66.67 79.17 NA 94.44 45.16 78.95 60.00 60.00 54.55 62.07 65.00 70.00 93.75 68.42 80.65 75.00 66.67 47.06 48.00 50.00 48.15 57.78 93.75 75.00 83.33 52.17 75.00 56.67 62.50 70.00 74.07 62.50 57.69 61.11 68.75 61.11 71.43 48.00 88.24 79.55 K intron_retention l(2)k14710 chr2R - chr2R_2098166_2098232 chr2R_2098165_2098166;chr2R_2098232_2098233 chr2R_2098052_2098165;chr2R_2098233_2098330 0.00 3.85 NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA 6.67 0.00 0.00 0.00 4.00 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA K alternative_acceptor CG32075,CG6310 chr3L - chr3L_11056207_11056286 chr3L_11056224_11056286 chr3L_11056287_11056501;chr3L_11056003_11056206 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 92.31 100.00 NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA 85.71 NA NA 100.00 NA NA NA NA NA 100.00 NA 95.00 100.00 NA NA 100.00 100.00 NA 93.33 100.00 NA NA 100.00 NA 88.89 100.00 100.00 100.00 K intron_retention CG6695 chr3R + chr3R_20483133_20483237 chr3R_20483132_20483133;chr3R_20483237_20483238 chr3R_20481294_20483132;chr3R_20483238_20483290 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6194 chr3R - chr3R_11180831_11180997 chr3R_11180830_11180831;chr3R_11180997_11180998 chr3R_11180355_11180830;chr3R_11180998_11181074 0.00 NA 0.00 0.00 NA NA 0.00 0.00 2.94 NA NA 8.33 NA NA NA 0.00 13.33 NA 0.00 0.00 NA 0.00 5.26 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 11.76 NA 11.11 NA NA NA NA NA NA 0.00 K intron_retention Cam,I_chr2R_8152423_8161270,R_chr2R_8156928_8161261,noncoding_6216,I_chr2R_8161049_8161270 chr2R + chr2R_8156941_8161270 chr2R_8156940_8156941;chr2R_8161270_8161271 chr2R_8156698_8156940;chr2R_8161271_8161361 0.00 0.00 0.30 0.00 0.00 0.33 0.00 0.17 0.23 0.65 0.00 0.20 0.00 0.00 0.29 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 1.21 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.16 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.12 0.00 0.00 0.00 K intron_retention Hsc70-5 chr2R - chr2R_10142913_10143173 chr2R_10142912_10142913;chr2R_10143173_10143174 chr2R_10142896_10142912;chr2R_10143174_10143220 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 3.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette noncoding_5243,l(2)44DEa,I_chr2R_4553577_4562151,I_chr2R_4553817_4565934,I_chr2R_4554300_4563976,I_chr2R_4565692_4565934 chr2R + chr2R_4564113_4565934 chr2R_4564113_4565470;chr2R_4565534_4565934 chr2R_4565471_4565533 chr2R_4563977_4564112;chr2R_4565935_4566034 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.76 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG15717,CG4330 chrX + chrX_13026005_13026964 chrX_13026004_13026005;chrX_13026964_13026965 chrX_13025026_13026004;chrX_13026965_13028865 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 3.23 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon spn-B,RI_chr3R_10154615_10155360 chr3R + chr3R_10154615_10155360 chr3R_10154615_10154667 chr3R_10155361_10155771 chr3R_10154668_10155346 chr3R_10154515_10154614 60.00 53.85 55.56 33.33 85.71 60.00 52.63 50.00 46.43 60.00 55.56 48.00 54.55 50.00 80.00 45.16 60.00 71.43 50.00 54.84 55.56 87.50 78.57 62.50 58.33 66.67 64.29 42.86 58.33 66.67 61.54 69.23 76.92 43.48 50.00 61.54 91.67 77.78 76.92 76.19 70.00 52.38 50.00 53.85 84.62 56.25 47.06 68.75 46.15 50.00 61.11 50.00 66.67 61.54 75.00 62.50 62.50 75.00 K jcn_only_AA lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22817840_22817968;chr2L_22817840_22817891 chr2L_22817840_22817943 chr2L_22817740_22817839;chr2L_22817969_22817982 1.29 2.38 1.85 1.43 3.33 4.65 2.06 3.12 1.40 4.17 3.03 1.08 1.18 0.00 0.00 0.91 6.90 0.00 3.03 4.71 4.00 2.13 1.72 0.00 0.00 0.00 1.11 0.00 0.00 3.33 2.70 0.00 0.00 0.93 0.00 4.08 4.84 0.00 0.00 1.14 0.00 3.57 1.72 0.00 NA 0.00 2.78 1.45 0.98 1.89 0.00 0.00 0.00 4.00 0.00 2.13 3.17 0.00 K alternative_donor CG3446,I_chrX_6244272_6244321 chrX - chrX_6244272_6244325 chrX_6244272_6244321 chrX_6244172_6244271;chrX_6244326_6244397 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.44 0.57 0.00 0.00 0.75 0.00 0.00 0.99 0.75 0.00 1.33 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.88 3.85 0.00 3.85 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 K intron_retention CG11943 chrX + chrX_19752854_19752936 chrX_19752853_19752854;chrX_19752936_19752937 chrX_19752696_19752853;chrX_19752937_19753385 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.39 1.35 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.65 0.00 0.00 0.48 0.97 0.00 0.00 2.41 1.14 0.00 0.70 1.55 0.00 0.00 1.52 0.00 1.69 0.00 0.00 0.83 0.75 0.00 0.74 1.56 1.19 0.00 0.54 0.00 0.00 1.23 0.00 0.00 0.00 0.74 0.93 0.00 1.18 0.00 0.00 K jcn_only_AA RhoGAP68F,RI_chr3L_12133229_12134100 chr3L + chr3L_12133229_12134351;chr3L_12133229_12134100 chr3L_12133229_12134239 chr3L_12133129_12133228 0.00 1.85 0.00 0.00 0.00 0.00 2.67 0.00 0.71 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 2.08 0.00 0.00 1.82 7.14 0.00 1.47 8.82 4.76 1.27 0.00 0.00 1.08 0.00 0.00 0.00 1.27 2.56 15.09 0.00 1.89 0.00 1.25 3.85 0.00 0.00 1.67 1.23 3.64 1.72 2.68 0.00 0.00 2.99 0.00 3.57 0.00 0.00 0.00 0.00 0.00 K intron_retention CG8889 chr2R - chr2R_7914657_7914727 chr2R_7914656_7914657;chr2R_7914727_7914728 chr2R_7914547_7914656;chr2R_7914728_7914987 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention I_chrX_5796578_5796722,CG4020,CG3726 chrX + chrX_5835305_5835381 chrX_5835304_5835305;chrX_5835381_5835382 chrX_5835198_5835304;chrX_5835382_5835509 6.67 7.69 NA 16.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 6.67 NA NA NA 6.67 NA NA NA NA NA 13.33 0.00 NA NA NA NA 8.33 NA NA K intron_retention CG5004,E_chrX_17024712_17024996 chrX + chrX_17022208_17022270 chrX_17022207_17022208;chrX_17022270_17022271 chrX_17022032_17022207;chrX_17022271_17022950 0.00 0.00 0.00 0.00 0.00 1.64 1.41 0.00 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.83 1.67 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 3.85 3.57 0.00 1.25 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.26 0.00 0.00 0.00 0.00 1.42 1.41 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 K jcn_only_AA CG1646,RI_chr3R_24638209_24638280,I_chr3R_24641816_24641874 chr3R + chr3R_24637877_24638116;chr3R_24637877_24637948 chr3R_24637877_24637958 chr3R_24637841_24637876;chr3R_24638117_24638208 2.19 3.28 3.96 5.52 3.80 0.00 10.81 4.17 2.19 0.00 3.53 0.00 7.27 4.55 2.97 3.49 1.47 4.30 1.11 3.78 3.61 8.24 0.00 3.45 1.56 6.93 3.57 5.88 1.77 1.69 4.76 3.36 0.47 0.00 4.35 4.62 1.31 2.33 5.31 1.32 0.00 1.03 3.17 0.99 0.88 0.97 1.15 0.00 0.00 3.92 3.80 1.90 1.52 0.00 1.55 1.67 1.56 1.34 K jcn_only_AD sar1,I_chr3R_18184656_18185246,I_chr3R_18185015_18185246,I_chr3R_18185148_18185246 chr3R + chr3R_18184656_18185246;chr3R_18184351_18185246;chr3R_18185015_18185246 chr3R_18185148_18185246 chr3R_18185247_18185346;chr3R_18184285_18184350 0.30 0.27 0.23 0.38 0.00 0.56 0.21 0.19 0.44 1.08 0.00 0.16 0.00 0.34 0.22 0.24 0.75 0.30 0.27 0.84 0.31 0.30 0.87 0.20 0.00 0.31 0.72 1.29 2.30 0.29 1.22 0.00 0.33 0.19 0.00 0.81 0.00 0.50 0.33 0.18 0.26 0.15 0.37 0.32 0.23 0.83 0.22 0.00 0.47 1.01 0.79 0.80 0.00 1.30 0.00 0.69 0.19 0.00 K alternative_donor TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748981_19749882;chr2R_19748981_19749899;chr2R_19748981_19750012 chr2R_19748981_19749783 chr2R_19748884_19748980;chr2R_19750013_19750013 83.33 87.88 85.71 87.69 72.41 77.78 83.33 78.31 90.22 72.22 87.50 83.33 85.71 78.95 75.00 77.33 79.49 83.33 84.00 82.29 87.80 76.47 84.78 80.49 75.76 81.40 87.18 92.31 76.47 87.88 70.83 73.33 82.81 84.85 82.14 86.49 92.59 78.57 74.42 84.51 79.59 81.93 81.82 87.18 91.67 82.93 68.00 92.00 87.50 77.14 84.09 74.19 88.00 92.86 87.27 75.86 86.05 89.09 K jcn_only_AA Pkc98E chr3R + chr3R_24867963_24870088 chr3R_24867963_24868547 chr3R_24867889_24867962 22.62 17.24 41.67 52.00 32.14 29.41 48.57 33.33 42.65 27.27 36.36 41.56 37.93 26.67 45.00 43.59 37.50 27.27 20.83 75.36 31.82 6.45 16.67 4.26 8.82 19.44 16.95 11.54 11.90 11.63 17.05 NA 12.12 31.67 17.50 7.41 13.64 13.79 16.67 19.15 NA 30.65 54.29 9.76 NA 17.86 21.43 27.03 43.10 NA 18.03 15.38 20.83 NA 34.15 NA 23.81 NA K intron_retention hermaphrodite chr2L + chr2L_16678582_16678642 chr2L_16678581_16678582;chr2L_16678642_16678643 chr2L_16678318_16678581;chr2L_16678643_16679932 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 4.35 0.00 6.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG11753 chr3R + chr3R_4479008_4479080 chr3R_4479008_4479077 chr3R_4478941_4479007;chr3R_4479081_4479145 99.02 100.00 99.18 100.00 98.53 98.98 98.68 100.00 99.61 100.00 97.25 98.58 98.92 97.40 98.29 99.09 98.85 99.07 98.20 99.08 99.12 99.14 96.72 99.38 100.00 99.06 99.39 97.50 98.23 100.00 100.00 98.18 99.42 100.00 95.83 100.00 97.85 98.81 99.53 99.41 98.92 99.43 97.40 97.96 97.97 98.80 98.73 98.18 100.00 98.32 99.33 99.02 97.96 99.37 97.52 99.04 100.00 98.88 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389762_2395659 chrX_2389762_2392054;chrX_2392149_2392515;chrX_2392665_2393243;chrX_2393712_2395659 chrX_2392055_2392148;chrX_2392516_2392664;chrX_2393244_2393711 chrX_2389645_2389761;chrX_2395660_2395759 83.34 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor RpL15 chr3LHet + chr3LHet_2397992_2398049;chr3LHet_2397820_2398049 chr3LHet_2397859_2398049 chr3LHet_2398050_2398052;chr3LHet_2397802_2397819 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Mmp1,E_chr2R_20560380_20562585,I_chr2R_20564123_20565214,I_chr2R_20569965_20572193 chr2R - chr2R_20559830_20562585 chr2R_20559830_20560073;chr2R_20560375_20562585 chr2R_20560074_20560374 chr2R_20559732_20559829;chr2R_20562586_20562664 57.73 44.44 57.14 53.85 41.18 46.15 57.14 70.00 62.96 37.08 53.33 76.92 NA 63.64 70.00 75.00 54.55 53.85 66.67 57.89 71.43 83.78 55.56 50.00 53.85 70.00 53.85 45.90 42.86 58.82 94.44 68.00 67.31 50.00 44.44 65.52 48.98 51.61 39.39 45.45 65.85 64.00 63.64 78.57 58.97 60.98 44.44 70.21 54.84 57.58 66.67 55.00 62.50 50.00 69.23 58.33 50.85 82.00 K alternative_acceptor wge chr3R - chr3R_18539090_18539306;chr3R_18539117_18539306 chr3R_18539087_18539306 chr3R_18539307_18539565;chr3R_18538527_18539086 0.00 3.33 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 2.27 0.00 3.85 0.00 0.00 0.00 0.00 0.00 1.82 3.45 0.00 0.00 3.57 4.76 0.00 3.85 6.25 0.00 0.00 1.96 0.00 0.00 0.00 7.14 0.00 2.50 0.00 2.70 3.33 0.00 1.75 0.00 0.00 4.35 5.00 0.00 0.00 1.92 0.00 0.00 5.26 4.17 0.00 3.45 0.00 0.00 6.25 K intron_retention tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959283_5960158 chr3R_5959282_5959283;chr3R_5960158_5960159 chr3R_5958937_5959282;chr3R_5960159_5960224 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 95.00 NA NA 100.00 100.00 NA 100.00 NA NA NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 N jcn_only_AA wech,I_chr2R_3373673_3377000,I_chr2R_3373673_3377045,I_chr2R_3373673_3377324,I_chr2R_3376705_3376837 chr2R - chr2R_3373673_3376837;chr2R_3376324_3376837 chr2R_3376705_3376837 chr2R_3376838_3376937 8.46 4.17 8.11 0.00 19.35 0.00 16.28 2.63 9.38 20.00 44.44 12.73 2.50 8.82 9.68 0.00 7.69 10.53 2.94 10.00 19.05 17.39 18.18 9.52 NA 7.69 NA NA NA 7.50 2.78 NA 14.00 6.10 17.39 NA 3.12 NA 9.52 6.78 NA 4.41 5.13 3.12 NA NA NA 5.00 2.60 NA 16.67 NA NA NA 9.43 NA NA 11.54 K alternative_donor CG1622,REI_chrX_13191277_13191339,RI_chrX_13191703_13191779,I_chrX_13191916_13192167,I_chrX_13192409_13192738,EI_chrX_13192857_13192928 chrX + chrX_13191685_13191779 chrX_13191703_13191779 chrX_13191780_13191847;chrX_13191617_13191684 2.04 2.38 2.56 2.13 0.00 3.85 1.52 1.39 2.14 2.26 3.45 2.16 0.00 0.00 5.00 2.56 0.00 5.26 0.00 2.15 4.76 1.54 1.01 1.69 1.56 0.00 2.03 3.31 4.89 1.61 17.78 2.09 2.75 1.80 0.68 3.26 1.91 1.99 1.40 1.64 3.05 2.55 0.00 2.05 3.19 2.04 1.83 2.70 1.71 3.12 2.50 1.57 0.59 2.01 0.00 2.04 0.99 2.45 K jcn_only_AA CG5792,F_chr2L_12714547_12714695 chr2L - chr2L_12714297_12721450 chr2L_12718057_12721450 chr2L_12721451_12721525 50.00 NA NA NA NA NA NA 45.00 29.03 NA NA 44.44 NA NA NA NA NA NA NA 28.12 NA 64.29 52.38 54.05 NA NA 60.00 NA NA NA NA NA 30.43 NA 75.00 NA 52.17 57.14 62.07 50.00 NA 55.00 NA NA NA 40.91 45.00 NA 47.83 NA NA NA NA 38.10 NA NA 50.00 NA K intron_retention sqd,I_chr3R_9462248_9471474,I_chr3R_9468150_9468236,I_chr3R_9470417_9471474 chr3R - chr3R_9468932_9471474 chr3R_9468931_9468932;chr3R_9471474_9471475 chr3R_9468891_9468931;chr3R_9471475_9471574 0.00 0.00 2.27 3.70 0.00 0.00 2.35 2.60 2.48 0.00 0.00 1.50 NA 1.45 0.00 0.00 7.69 0.00 0.00 1.82 0.00 0.00 0.32 0.00 2.70 0.00 0.00 2.01 0.00 0.00 0.00 0.00 1.27 2.35 1.38 0.50 0.67 0.00 1.05 0.58 0.00 2.08 0.00 1.10 0.00 0.00 0.00 2.13 1.57 0.00 1.40 0.00 0.00 0.00 3.57 0.00 0.00 1.32 K alternative_acceptor CG3632,RI_chrX_16195880_16196242 chrX + chrX_16190941_16191693 chrX_16190941_16191682 chrX_16190893_16190940;chrX_16191694_16191751 33.33 NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA 30.77 NA NA NA 55.56 NA NA 33.33 NA NA NA NA NA NA NA NA NA N alternative_donor Syb chr2R - chr2R_6137333_6137873;chr2R_6137333_6138451 chr2R_6137333_6138021 chr2R_6137005_6137332;chr2R_6138452_6138649 7.37 3.74 12.05 13.84 24.32 13.70 11.90 17.24 3.21 14.06 2.47 5.15 4.92 7.69 7.37 2.38 8.57 6.67 8.57 1.41 3.95 25.71 4.50 5.79 6.67 16.67 6.73 6.41 40.43 10.11 7.53 6.82 10.56 3.36 12.31 12.12 5.93 8.74 10.00 8.59 24.77 2.98 8.33 8.16 7.30 4.93 6.67 20.39 5.15 5.06 5.71 13.21 5.66 5.21 8.24 3.60 4.00 9.64 K intron_retention Pino,I_chr2L_1115944_1117443,I_chr2L_1116691_1116908,I_chr2L_1117517_1117866,I_chr2L_1117918_1118565 chr2L - chr2L_1115944_1116440 chr2L_1115943_1115944;chr2L_1116440_1116441 chr2L_1115844_1115943;chr2L_1116441_1116690 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor l(2)03709,I_chr2R_14707617_14707700,I_chr2R_14708048_14708095 chr2R + chr2R_14708048_14708109 chr2R_14708048_14708095 chr2R_14707979_14708047;chr2R_14708110_14708178 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG30046 chr2R + chr2R_8203343_8203394 chr2R_8203342_8203343;chr2R_8203394_8203395 chr2R_8203171_8203342;chr2R_8203395_8204955 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 3.92 0.00 2.13 1.54 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 3.23 NA 0.00 0.00 2.22 NA 0.00 0.00 0.00 NA 0.00 0.00 2.86 0.00 NA 0.00 3.85 0.00 0.00 0.00 0.00 0.00 4.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Mhcl,I_chr3R_11895069_11895448 chr3R - chr3R_11894337_11895584 chr3R_11895069_11895584 chr3R_11895585_11895758;chr3R_11894313_11894336 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG16971,I_chr3L_225856_225909,I_chr3L_225919_225983,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_225919_226004 chr3L_225918_225919;chr3L_226004_226005 chr3L_225910_225918;chr3L_226005_226009 99.61 99.68 99.56 100.00 99.60 99.66 99.10 100.00 99.51 99.19 99.67 99.74 99.69 99.67 99.71 99.70 99.65 99.02 99.04 99.36 99.67 100.00 99.79 99.49 99.69 100.00 99.73 99.64 98.88 99.75 99.70 99.36 99.66 99.81 99.68 100.00 99.56 99.70 99.31 99.21 99.35 99.29 100.00 99.19 99.39 99.28 99.49 99.67 99.55 99.42 99.40 99.61 99.46 99.24 98.67 100.00 99.29 99.61 K intron_retention CG9422,I_chr2R_2584435_2585553 chr2R + chr2R_2579569_2579624 chr2R_2579568_2579569;chr2R_2579624_2579625 chr2R_2579394_2579568;chr2R_2579625_2579741 0.00 0.00 0.00 0.00 0.00 4.55 NA 0.00 0.00 0.00 NA 0.00 NA 15.38 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.86 13.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.00 2.86 NA 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG32344,RI_chr3L_321550_321914,I_chr3L_326540_326703,RI_chr3L_326725_326866 chr3L - chr3L_321361_321914;chr3L_321550_321914 chr3L_321364_321914 chr3L_321915_322014;chr3L_321242_321360 89.33 100.00 90.00 60.00 NA 89.74 72.73 94.00 98.04 NA 95.45 88.71 90.62 94.12 94.44 87.93 NA 92.00 82.50 96.00 89.29 81.82 77.78 92.31 NA 90.32 94.44 NA NA 80.95 86.49 90.32 91.11 86.27 86.67 NA NA 95.00 72.00 84.21 85.19 90.74 93.75 NA 89.19 94.74 88.24 92.86 83.05 88.24 92.50 85.00 82.05 96.30 88.37 89.36 82.67 84.04 K intron_retention CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20824631_20825283 chr2L_20824630_20824631;chr2L_20825283_20825284 chr2L_20824625_20824630;chr2L_20825284_20825366 93.75 100.00 NA 100.00 NA NA 84.62 92.86 90.48 NA 100.00 91.67 87.50 NA NA 92.86 NA NA NA 95.45 NA 93.75 90.00 100.00 100.00 NA 100.00 88.89 NA 100.00 NA NA NA 100.00 NA 100.00 100.00 NA 100.00 77.27 NA 93.75 NA 90.00 NA 94.12 100.00 63.64 93.75 93.75 100.00 NA NA 100.00 87.50 100.00 91.67 63.64 K intron_retention CG8331,I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10060028_10060088 chr2R_10060027_10060028;chr2R_10060088_10060089 chr2R_10059795_10060027;chr2R_10060089_10060188 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 7.14 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5938,RI_chr3R_23101686_23102014 chr3R + chr3R_23101508_23102014 chr3R_23101507_23101508;chr3R_23102014_23102015 chr3R_23101422_23101507;chr3R_23102015_23102114 0.00 0.00 0.00 7.89 0.00 0.00 0.00 0.00 3.23 0.00 0.00 3.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10639 chr2L - chr2L_18972548_18972601 chr2L_18972547_18972548;chr2L_18972601_18972602 chr2L_18971947_18972547;chr2L_18972602_18973455 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 12.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention Ku80 chr2L - chr2L_15770554_15770608 chr2L_15770553_15770554;chr2L_15770608_15770609 chr2L_15770431_15770553;chr2L_15770609_15770841 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 3.70 NA 0.00 0.00 0.00 0.00 NA 2.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 NA NA 0.00 0.00 0.00 N alternative_donor CG8051,I_chrX_19198128_19201351 chrX - chrX_19198128_19199330;chrX_19198128_19201671 chrX_19198128_19199326 chrX_19198028_19198127;chrX_19201672_19201734 30.00 20.00 33.33 25.00 20.00 50.00 20.00 33.33 27.78 50.00 10.00 23.53 40.00 12.50 40.00 25.00 14.29 20.00 20.00 26.67 50.00 50.00 30.00 50.00 28.57 33.33 60.00 25.00 42.86 25.00 16.67 50.00 44.44 30.77 33.33 33.33 25.00 33.33 28.57 31.25 20.00 50.00 12.50 66.67 50.00 30.00 20.00 30.00 33.33 66.67 33.33 50.00 11.11 20.00 25.00 33.33 33.33 17.65 K alternative_acceptor CG14614,REI_chrX_21856047_21856229,RI_chrX_21856896_21857109 chrX - chrX_21857041_21857109;chrX_21856924_21857109 chrX_21856896_21857109 chrX_21857110_21857209;chrX_21856796_21856895 0.00 3.03 2.56 0.00 0.00 0.00 0.00 1.79 1.14 0.00 2.56 2.82 0.00 2.63 0.00 0.00 3.03 0.00 0.00 0.00 2.70 6.90 0.00 0.00 0.00 0.00 NA 0.00 4.17 0.00 0.00 0.00 0.00 2.00 0.00 3.57 0.00 0.00 2.22 0.00 NA 1.39 3.33 0.00 0.00 4.35 3.45 0.00 1.72 4.55 2.50 0.00 7.14 0.00 0.00 0.00 0.00 NA K jcn_only_AD CG15111 chr2R + chr2R_15025035_15025322 chr2R_15025042_15025322 chr2R_15025323_15025408;chr2R_15024953_15025034 96.08 NA 97.30 94.74 NA 96.00 100.00 93.18 97.78 NA NA 98.33 NA 93.75 96.00 96.92 NA 93.10 90.62 92.86 NA NA 97.22 100.00 NA NA 96.55 NA NA NA 100.00 NA NA 92.31 95.65 NA 91.30 NA NA 100.00 NA 97.62 95.45 96.15 NA 100.00 NA 96.15 92.31 92.31 94.59 96.97 NA NA 100.00 100.00 89.29 95.45 K multi_cassette Caps,I_chr4_1250965_1254496,I_chr4_1252217_1252262,I_chr4_1259725_1274457 chr4 + chr4_1259725_1274457 chr4_1259725_1268381;chr4_1268692_1268754;chr4_1269136_1274457 chr4_1268382_1268691;chr4_1268755_1269135 chr4_1259703_1259724;chr4_1274458_1274557 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 66.67 NA K intron_retention deltaCOP,I_chrX_1754047_1754089,I_chrX_1755132_1755191,E_chrX_1755139_1755188,I_chrX_1757755_1757801 chrX - chrX_1754658_1754718 chrX_1754657_1754658;chrX_1754718_1754719 chrX_1754460_1754657;chrX_1754719_1755131 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rab35,noncoding_24897 chrX - chrX_20052303_20052371 chrX_20052302_20052303;chrX_20052371_20052372 chrX_20052003_20052302;chrX_20052372_20052512 50.00 46.15 70.00 NA NA NA 42.11 66.67 63.16 NA NA 73.68 NA 66.67 50.00 NA 70.00 NA 80.00 66.67 NA 41.67 56.25 38.89 26.67 NA 35.29 58.33 21.05 60.00 50.00 NA 46.15 56.25 70.00 NA 50.00 33.33 25.93 28.57 35.29 57.14 NA 29.41 26.32 42.86 36.36 53.33 56.25 29.41 25.00 NA NA 46.15 63.64 NA 46.15 66.67 K intron_retention CG12006 chr3L + chr3L_3813361_3813450 chr3L_3813360_3813361;chr3L_3813450_3813451 chr3L_3813117_3813360;chr3L_3813451_3814003 94.34 92.68 97.01 97.40 93.33 92.73 98.11 96.77 97.27 97.62 97.87 95.88 90.48 91.89 90.14 92.73 92.50 98.00 92.00 93.75 95.65 96.43 95.38 95.19 98.08 96.08 94.81 98.00 94.34 94.34 91.07 97.92 91.89 95.06 92.00 94.64 93.10 95.06 89.06 93.52 97.83 93.52 95.00 86.96 88.61 88.41 93.67 94.44 95.00 94.94 91.11 91.11 90.62 97.56 94.64 92.93 90.62 92.68 K alternative_last_exon Mbs,I_chr3L_16045251_16046108,I_chr3L_16057100_16057329 chr3L + chr3L_16070910_16073858 chr3L_16070910_16071919 chr3L_16073859_16075246 chr3L_16071920_16072826 chr3L_16070823_16070909 50.00 33.33 NA 33.33 NA NA 33.33 33.33 50.00 NA NA 50.00 33.33 NA NA 50.00 NA NA 50.00 33.33 50.00 NA NA 33.33 100.00 50.00 66.67 50.00 50.00 NA 50.00 50.00 NA 66.67 NA NA NA NA NA 66.67 NA 33.33 50.00 50.00 NA 25.00 0.00 NA 60.00 33.33 NA NA NA NA NA NA NA 33.33 K alternative_acceptor CG13742,I_chr2R_4979276_4979936 chr2R - chr2R_4973326_4973449;chr2R_4973398_4973449 chr2R_4973359_4973449 chr2R_4973450_4973534;chr2R_4973308_4973325 25.00 NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA K intron_retention Pak,RI_chr3R_2181143_2181934 chr3R + chr3R_2185033_2185103 chr3R_2185032_2185033;chr3R_2185103_2185104 chr3R_2184814_2185032;chr3R_2185104_2185772 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 4.44 6.15 5.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 3.19 0.00 0.00 0.00 0.00 2.35 0.00 0.96 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention brat,I_chr2L_19134277_19143634,RI_chr2L_19145845_19146761 chr2L + chr2L_19166126_19166214 chr2L_19166125_19166126;chr2L_19166214_19166215 chr2L_19166085_19166125;chr2L_19166215_19166358 100.00 98.36 98.61 100.00 100.00 100.00 100.00 100.00 99.42 100.00 98.15 100.00 98.53 100.00 100.00 99.07 100.00 100.00 100.00 100.00 100.00 97.06 100.00 98.70 100.00 100.00 100.00 97.96 100.00 99.02 100.00 100.00 100.00 100.00 98.44 98.73 98.53 100.00 100.00 100.00 100.00 99.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA I_chr3L_18664773_18665233,GNBP2,I_chr3L_18667579_18667644 chr3L - chr3L_18668078_18668437 chr3L_18668376_18668437 chr3L_18668438_18668454 46.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 46.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention dgt1,CG7824 chr3R - chr3R_25680766_25680851 chr3R_25680765_25680766;chr3R_25680851_25680852 chr3R_25680427_25680765;chr3R_25680852_25681370 55.05 NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA 54.55 NA NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA 54.55 55.56 NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG11710 chrX - chrX_20299022_20299090 chrX_20299022_20299077 chrX_20298827_20299021;chrX_20299091_20299199 80.56 79.59 84.85 84.31 80.65 87.88 73.33 71.43 82.05 73.17 87.50 80.26 69.57 81.82 82.86 80.95 76.19 81.48 75.00 80.65 70.45 83.56 73.33 85.29 66.67 75.00 78.26 84.21 82.17 84.00 72.60 86.76 85.42 80.43 88.10 80.70 72.88 76.00 74.58 85.71 73.17 79.17 72.00 79.63 79.22 80.56 81.13 85.84 68.57 82.86 77.27 85.00 87.10 76.06 75.61 81.54 72.55 82.22 K jcn_only_AD I_chr3R_23069667_23070365,CG5987 chr3R - chr3R_23074805_23074990 chr3R_23074805_23074865 chr3R_23074264_23074804;chr3R_23074991_23075500 91.67 NA NA 83.87 NA NA NA NA NA NA NA NA NA NA NA 91.67 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 90.48 NA K intron_retention e(y)1 chrX + chrX_17736443_17736506 chrX_17736442_17736443;chrX_17736506_17736507 chrX_17736152_17736442;chrX_17736507_17737384 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 2.06 6.33 1.14 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4133 chr2L + chr2L_456898_456954 chr2L_456897_456898;chr2L_456954_456955 chr2L_456797_456897;chr2L_456955_457338 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.59 100.00 100.00 100.00 98.36 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 100.00 97.92 100.00 100.00 98.91 100.00 100.00 98.90 100.00 98.67 100.00 100.00 97.87 97.96 97.73 97.92 98.53 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 K alternative_donor opa1-like,I_chr2R_10119470_10120234,I_chr2R_10121848_10121900,I_chr2R_10122128_10122197,I_chr2R_10122334_10122393 chr2R - chr2R_10119470_10120234;chr2R_10119470_10120229 chr2R_10119470_10120220 chr2R_10119370_10119469;chr2R_10120235_10120334 29.73 33.33 30.23 37.35 30.61 36.84 35.21 32.86 28.57 21.05 42.86 28.21 20.51 25.00 29.09 34.04 26.32 23.91 31.25 28.74 33.33 32.76 27.40 27.54 27.66 33.33 38.98 32.50 34.00 20.51 25.00 31.25 29.73 26.87 25.00 37.78 32.14 36.54 32.39 66.07 31.25 27.66 19.05 26.56 18.75 22.73 26.98 25.81 25.58 27.14 25.71 32.50 33.33 39.47 25.00 33.93 32.73 18.75 N jcn_only_AD e(r) chrX - chrX_8799622_8800141;chrX_8799622_8799982 chrX_8799622_8799801 chrX_8799538_8799621;chrX_8800142_8800333 1.86 1.52 1.33 1.86 1.63 3.31 1.39 2.42 1.97 0.98 0.00 1.44 1.66 1.53 3.12 1.20 3.39 1.31 1.12 2.26 2.80 0.55 2.49 3.21 1.90 3.25 0.51 2.24 0.00 0.71 1.32 2.90 0.74 2.93 0.64 4.50 0.00 1.25 2.48 2.23 0.00 1.36 3.28 2.00 1.12 2.41 1.23 1.96 0.35 5.00 2.14 0.93 2.80 3.61 3.30 1.16 3.75 4.00 K intron_retention Atx-1,Atx-1_CG4542,CG4542 chrX + chrX_6716164_6716226 chrX_6716163_6716164;chrX_6716226_6716227 chrX_6715249_6716163;chrX_6716227_6716337 0.00 4.35 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 5.00 NA 0.00 0.00 NA 0.00 NA 0.00 2.56 NA NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 10.00 0.00 12.50 0.00 NA NA 7.41 5.00 0.00 3.12 NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 3.85 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor homer chr2L - chr2L_6722431_6723192 chr2L_6722431_6722796 chr2L_6722142_6722430;chr2L_6723193_6723254 11.11 9.09 9.09 3.03 8.70 16.67 10.26 4.65 7.02 15.00 14.29 8.89 6.25 11.76 11.11 15.15 7.41 19.05 15.00 8.70 13.04 8.70 10.26 14.81 12.50 5.00 15.15 12.50 19.05 13.04 4.55 16.67 30.00 5.41 10.00 19.05 11.63 6.06 8.33 16.67 NA 6.25 11.11 8.33 33.33 11.76 12.50 47.06 7.32 5.56 12.12 3.85 9.09 14.29 8.70 4.76 12.50 25.00 K alternative_acceptor CG42611,noncoding_22776,EF_chrX_9366694_9394117,RI_chrX_9367300_9389706 chrX - chrX_9366691_9393918 chrX_9366694_9393918 chrX_9393919_9393956;chrX_9366671_9366690 28.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RI_chrX_6482284_6482336,Pat1,I_chrX_6489999_6490050,APC7 chrX + chrX_6489999_6490050 chrX_6489998_6489999;chrX_6490050_6490051 chrX_6489899_6489998;chrX_6490051_6490150 96.30 96.55 93.33 96.36 96.15 100.00 96.43 95.24 94.37 94.44 88.89 94.12 97.67 96.67 94.12 96.30 97.06 100.00 97.73 91.84 88.89 93.75 97.56 96.55 100.00 100.00 96.30 100.00 97.78 100.00 89.19 90.24 82.69 98.39 100.00 93.75 96.30 95.00 95.65 94.87 96.77 98.41 96.67 93.02 91.89 92.42 95.45 96.10 97.18 96.67 97.30 96.00 100.00 95.45 95.12 100.00 96.97 95.45 K jcn_only_AD CG31678,I_chr2L_20661149_20674994 chr2L - chr2L_20661149_20674994 chr2L_20661149_20661989 chr2L_20661049_20661148 100.00 100.00 100.00 100.00 100.00 100.00 99.37 100.00 99.59 98.90 97.56 100.00 100.00 100.00 99.13 100.00 100.00 100.00 100.00 100.00 97.78 99.13 100.00 99.44 97.53 100.00 99.32 99.39 98.52 99.19 99.19 100.00 97.97 99.36 100.00 98.84 98.75 100.00 100.00 98.28 99.10 100.00 100.00 99.22 100.00 100.00 100.00 97.32 100.00 100.00 99.35 100.00 100.00 100.00 99.21 100.00 100.00 99.17 N alternative_acceptor Aats-val,I_chr2R_9088330_9088393,I_chr2R_9088412_9088502 chr2R + chr2R_9088330_9088393;chr2R_9088330_9088517 chr2R_9088330_9088502 chr2R_9088312_9088329;chr2R_9088518_9088602 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.35 98.29 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.02 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD E(Pc) chr2R + chr2R_7343296_7343871 chr2R_7343507_7343871 chr2R_7343872_7344239 97.92 94.92 100.00 100.00 91.67 96.88 96.77 94.64 94.79 96.34 90.32 96.15 NA 100.00 100.00 100.00 90.48 96.97 95.24 97.56 NA 98.43 95.97 98.88 97.83 93.33 97.92 98.91 90.72 98.32 100.00 100.00 100.00 100.00 96.97 94.12 99.25 98.63 99.18 98.57 100.00 94.85 100.00 100.00 100.00 94.03 94.83 100.00 97.30 88.64 98.91 97.06 100.00 100.00 97.83 98.00 96.77 98.77 K intron_retention CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8188676_8188735 chr2L_8188675_8188676;chr2L_8188735_8188736 chr2L_8188168_8188675;chr2L_8188736_8188877 0.00 0.00 0.00 0.84 0.00 1.16 0.56 0.00 1.27 0.00 0.00 0.00 0.00 1.00 0.00 1.36 0.41 0.00 0.00 0.00 0.00 0.66 0.39 0.00 0.00 0.00 1.52 1.00 2.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.46 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ttk,I_chr3R_27554202_27554334,I_chr3R_27554601_27555353 chr3R + chr3R_27554202_27555353 chr3R_27554201_27554202;chr3R_27555353_27555354 chr3R_27554114_27554201;chr3R_27555354_27555453 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.64 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 K intron_retention CG4829,I_chrX_16717240_16717547 chrX + chrX_16717240_16717619 chrX_16717239_16717240;chrX_16717619_16717620 chrX_16717140_16717239;chrX_16717620_16717647 3.05 1.59 2.86 3.19 3.42 2.89 4.03 3.36 2.95 3.08 1.58 3.12 3.68 4.78 2.08 2.19 3.49 3.47 3.37 2.34 2.89 8.02 3.60 2.97 2.86 4.39 2.97 4.65 2.94 4.13 6.93 4.03 5.42 3.32 3.52 2.06 1.70 1.96 2.02 6.41 3.42 2.72 1.77 3.79 6.72 2.81 3.99 5.76 2.53 3.19 2.47 3.05 2.39 1.38 2.65 1.79 1.93 2.97 N alternative_acceptor CG10462 chr2L - chr2L_19735222_19735511 chr2L_19735241_19735511 chr2L_19735512_19735633;chr2L_19735000_19735221 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10737 chr2R + chr2R_15062592_15063752 chr2R_15062591_15062592;chr2R_15063752_15063753 chr2R_15062387_15062591;chr2R_15063753_15063852 100.00 100.00 100.00 99.47 99.28 100.00 100.00 100.00 99.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.65 99.67 100.00 99.32 99.37 100.00 100.00 100.00 100.00 98.59 100.00 100.00 99.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.48 100.00 99.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette Fur1,I_chr3R_21179590_21179870,CEI_chr3R_21210600_21222433,I_chr3R_21257704_21287086 chr3R - chr3R_21180038_21181945 chr3R_21180038_21180669;chr3R_21181801_21181945 chr3R_21180670_21181800 chr3R_21179871_21180037;chr3R_21181946_21182064 4.26 5.13 4.76 1.85 0.00 2.70 11.76 3.28 3.70 3.03 3.45 4.62 0.00 5.00 5.26 8.11 3.23 2.94 5.41 6.58 3.85 11.43 5.26 5.41 4.17 2.70 8.33 3.33 18.18 5.41 5.88 3.57 23.08 3.12 3.85 24.14 2.47 3.33 2.63 4.44 14.29 3.80 3.85 5.26 2.70 7.41 2.08 20.00 5.26 2.86 4.26 4.35 9.09 4.00 2.78 3.45 5.66 15.15 K intron_retention CG12206,I_chrX_3367405_3367523 chrX - chrX_3360369_3360431 chrX_3360368_3360369;chrX_3360431_3360432 chrX_3360303_3360368;chrX_3360432_3360665 0.00 0.00 0.00 3.45 NA NA 16.67 3.85 14.81 11.11 NA 0.00 NA NA NA NA NA NA NA 23.81 0.00 0.00 2.94 0.00 0.00 7.69 8.33 6.67 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.52 NA 0.00 0.00 0.00 0.00 0.00 36.84 0.00 3.45 0.00 0.00 0.00 5.56 0.00 0.00 0.00 K jcn_only_AA RpL8,I_chr3L_2587513_2587750,I_chr3L_2587600_2587750,RI_chr3L_2587690_2587750,I_chr3L_2589746_2592161 chr3L + chr3L_2587514_2587750;chr3L_2587514_2587575 chr3L_2587514_2587717 chr3L_2587500_2587513;chr3L_2587751_2587850 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.03 0.03 0.00 0.00 0.03 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor CG1416,I_chr2L_21758100_21758179,I_chr2L_21758143_21758183,I_chr2L_21758143_21758209 chr2L + chr2L_21758143_21758201;chr2L_21758143_21758209;chr2L_21758143_21758183 chr2L_21758143_21758205 chr2L_21758116_21758142;chr2L_21758210_21758279 1.19 0.83 0.71 1.16 1.30 0.83 0.58 10.16 9.27 16.87 1.09 5.61 0.93 11.31 14.56 11.03 1.19 9.92 0.70 6.13 0.97 0.00 1.14 7.74 1.96 2.00 1.25 0.62 1.40 0.76 9.64 0.78 0.72 9.17 0.66 4.17 0.94 1.04 10.95 10.26 1.69 9.02 0.69 0.69 0.54 0.47 10.37 0.50 9.04 0.61 0.58 9.57 0.74 0.67 7.56 0.53 8.26 6.97 K alternative_donor n-syb,I_chr3L_1637270_1637558,metl chr3L - chr3L_1638855_1639041 chr3L_1638855_1638908 chr3L_1637903_1638854;chr3L_1639042_1639220 32.00 19.05 28.99 42.86 48.00 38.46 38.18 29.51 41.67 22.22 38.46 33.71 33.33 31.91 30.19 21.92 42.31 54.29 32.00 32.14 34.09 22.50 10.84 33.85 25.53 26.83 46.43 41.46 48.48 38.78 48.48 37.74 29.49 23.46 25.00 29.41 41.86 25.58 27.27 40.85 23.53 34.04 29.73 43.14 39.71 23.71 22.86 53.33 33.33 25.81 27.08 33.33 23.86 19.35 33.90 29.82 22.09 31.18 K intron_retention BEAF-32,I_chr2R_10658570_10659304,noncoding_6875 chr2R + chr2R_10658335_10659304 chr2R_10658334_10658335;chr2R_10659304_10659305 chr2R_10657939_10658334;chr2R_10659305_10659323 32.76 24.14 42.31 29.03 29.41 32.00 26.92 26.47 28.57 28.57 24.24 30.77 29.41 40.00 39.39 55.17 33.33 35.71 36.84 33.90 31.03 30.00 25.00 43.33 30.00 21.05 50.00 26.32 32.14 35.71 53.85 46.43 45.83 36.36 52.00 37.50 17.07 18.75 29.55 48.84 29.63 23.44 42.86 34.78 62.75 41.18 34.78 67.74 32.76 37.14 25.81 26.32 29.41 27.08 36.11 32.26 39.29 66.67 K alternative_acceptor CG1399,I_chr2R_3574133_3574191 chr2R - chr2R_3565240_3566074 chr2R_3565910_3566074 chr2R_3566075_3566131;chr2R_3564840_3565239 99.38 98.99 99.00 98.69 98.78 98.94 95.56 96.75 100.00 100.00 100.00 100.00 100.00 98.80 100.00 99.13 100.00 98.78 100.00 100.00 98.67 100.00 100.00 99.32 100.00 100.00 99.38 98.23 99.40 100.00 99.25 100.00 99.47 99.34 97.41 99.26 100.00 99.06 100.00 99.56 100.00 98.97 100.00 99.38 100.00 99.37 100.00 99.38 99.43 98.87 99.44 98.92 97.75 99.07 100.00 99.01 99.21 97.96 K intron_retention CG8878 chr2R - chr2R_8037503_8037555 chr2R_8037502_8037503;chr2R_8037555_8037556 chr2R_8037477_8037502;chr2R_8037556_8037641 100.00 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette CG1607 chr3R + chr3R_27215921_27216310 chr3R_27215921_27216019;chr3R_27216082_27216310 chr3R_27216020_27216081 chr3R_27215668_27215920;chr3R_27216311_27217526 100.00 95.24 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 96.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 97.87 100.00 100.00 95.83 93.33 100.00 95.00 100.00 100.00 90.00 87.50 100.00 90.00 100.00 96.97 100.00 100.00 96.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 97.96 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Tif-IA chr2L + chr2L_22250484_22250544 chr2L_22250483_22250484;chr2L_22250544_22250545 chr2L_22250433_22250483;chr2L_22250545_22250853 98.65 98.55 98.67 99.43 98.18 98.57 97.47 99.47 99.51 100.00 98.28 99.34 98.78 98.84 98.51 99.41 98.67 96.92 100.00 98.61 98.04 96.88 99.07 100.00 100.00 100.00 98.99 98.25 97.06 98.15 97.62 100.00 97.44 97.14 98.46 98.61 100.00 98.21 91.84 98.78 97.56 98.65 100.00 98.88 100.00 100.00 100.00 100.00 98.45 100.00 99.09 98.59 97.78 97.50 98.97 97.22 97.10 98.39 K intron_retention CG12203,I_chrX_19386624_19386709,I_chrX_19400271_19400518 chrX + chrX_19386620_19386709 chrX_19386619_19386620;chrX_19386709_19386710 chrX_19386524_19386619;chrX_19386710_19386809 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2389762_2395659 chrX_2389762_2392054;chrX_2392149_2392515;chrX_2392665_2393243;chrX_2393712_2394269;chrX_2394396_2395151;chrX_2395275_2395659 chrX_2392055_2392148;chrX_2392516_2392664;chrX_2393244_2393711;chrX_2394270_2394395;chrX_2395152_2395274 chrX_2389645_2389761;chrX_2395660_2395759 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Galpha49B,I_chr2R_8501587_8501648,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500357_8501648 chr2R_8500356_8500357;chr2R_8501648_8501649 chr2R_8500333_8500356;chr2R_8501649_8501748 96.30 100.00 93.33 91.30 100.00 NA 90.00 96.30 97.22 NA 100.00 93.55 100.00 100.00 92.86 96.00 92.86 92.86 86.67 95.45 100.00 90.00 100.00 90.91 100.00 92.31 100.00 NA NA NA 100.00 NA NA 96.55 87.50 100.00 88.89 NA NA 90.00 NA 100.00 94.12 NA NA NA NA NA 90.91 NA 100.00 100.00 NA NA 100.00 100.00 NA NA K jcn_only_AD Rbp2,I_chrX_16342886_16343906,I_chrX_16343528_16343906 chrX + chrX_16342763_16343906 chrX_16343528_16343906 chrX_16343907_16344006;chrX_16342757_16342762 0.00 0.00 0.00 1.29 0.79 0.75 1.08 0.00 0.00 0.00 0.00 0.35 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 1.92 3.45 0.00 0.00 6.90 1.23 0.00 0.00 0.00 0.56 0.18 0.00 0.00 0.00 0.00 0.00 2.56 0.46 0.48 0.00 0.88 0.00 0.46 0.32 4.76 0.00 0.25 NA 0.00 0.00 0.86 NA 0.51 0.00 0.00 0.00 N alternative_acceptor I_chr3L_9481026_9484943,noncoding_11665 chr3L + chr3L_9481349_9484943;chr3L_9481349_9481415 chr3L_9481349_9481457 chr3L_9481282_9481348;chr3L_9484944_9485043 33.33 33.33 NA NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA 100.00 33.33 NA NA NA NA NA NA NA 33.33 25.00 33.33 NA NA NA NA NA 33.33 NA 33.33 NA NA NA 33.33 NA NA 33.33 33.33 NA 0.00 33.33 NA 33.33 NA NA NA 33.33 NA K intron_retention Khc-73 chr2R - chr2R_11412243_11412364 chr2R_11412242_11412243;chr2R_11412364_11412365 chr2R_11410580_11412242;chr2R_11412365_11412394 0.00 NA NA NA NA NA NA 0.00 6.67 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N jcn_only_AA Dhap-at,CG33494 chr3R - chr3R_21320135_21320838 chr3R_21320143_21320838 chr3R_21320839_21320926;chr3R_21319958_21320134 100.00 100.00 100.00 100.00 100.00 100.00 98.32 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG9425,I_chr3L_14783173_14784369 chr3L + chr3L_14783173_14784369;chr3L_14783173_14784970 chr3L_14783173_14785138 chr3L_14783073_14783172;chr3L_14785139_14785560 7.69 NA NA 0.00 NA NA 0.00 0.00 10.00 NA NA 0.00 NA NA NA 28.12 NA NA 0.00 15.15 NA NA NA NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA 10.71 NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA K jcn_only_AA eIF4G,I_chr4_948813_950447 chr4 - chr4_950743_951137 chr4_950758_951137 chr4_951138_951213;chr4_950706_950742 80.91 67.86 81.82 86.29 77.42 96.97 54.55 81.15 81.06 NA 79.49 80.00 91.18 72.22 80.77 83.85 68.75 97.06 68.18 78.57 85.71 69.57 80.39 90.00 90.32 85.71 79.49 77.27 NA NA 84.85 NA NA 88.51 87.10 76.74 NA 66.67 NA 80.43 NA 89.47 86.54 89.47 NA NA NA NA 87.63 NA 87.72 79.31 NA NA 78.38 NA NA 80.00 K intron_retention Uba2 chr3L - chr3L_8120055_8120110 chr3L_8120054_8120055;chr3L_8120110_8120111 chr3L_8118351_8120054;chr3L_8120111_8120398 0.97 0.00 2.27 2.36 0.00 0.00 0.00 0.79 0.00 0.00 1.33 1.27 2.63 1.23 1.89 0.81 0.00 0.00 4.76 1.90 0.00 0.00 3.77 4.13 0.00 0.97 9.00 5.71 0.00 0.00 0.00 0.00 1.67 1.75 0.00 1.45 0.00 0.00 2.63 0.69 2.15 1.29 0.00 2.15 3.28 2.88 1.05 1.12 4.68 3.12 0.88 1.19 0.00 0.00 0.00 0.00 2.78 0.00 K alternative_acceptor CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516399_21517821 chr3L_21516399_21517792 chr3L_21516383_21516398;chr3L_21517822_21517920 35.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 35.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention I_chr2R_19695638_19696332,Nxt1,RI_chr2R_19699261_19699317,CG4797 chr2R - chr2R_19699261_19699317 chr2R_19699260_19699261;chr2R_19699317_19699318 chr2R_19699161_19699260;chr2R_19699318_19699386 0.00 NA NA NA NA NA 12.50 NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 9.09 0.00 0.00 NA NA 0.00 7.14 0.00 NA 0.00 4.55 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 10.00 NA 0.00 0.00 0.00 N jcn_only_AA CG18228 chr3R - chr3R_4087273_4087522;chr3R_4087428_4087522 chr3R_4087322_4087522 chr3R_4087523_4087669;chr3R_4087045_4087272 36.36 31.82 37.04 38.10 27.27 44.12 27.27 25.84 27.43 NA NA 27.94 26.00 27.78 40.74 26.45 36.36 36.36 43.48 41.18 43.48 8.70 45.83 44.12 NA NA 46.67 42.86 NA NA 40.98 NA NA 39.34 32.00 NA NA 40.00 NA 22.22 NA 41.54 24.39 NA NA 35.29 33.33 NA 33.72 36.59 34.21 26.32 NA 45.45 45.45 45.83 33.33 45.83 K jcn_only_AD None chrU - chrU_5771599_5771833;chrU_5771599_5771693 chrU_5771599_5771684 69.29 69.67 73.93 69.00 68.30 71.85 69.81 63.58 70.96 67.80 70.30 68.63 77.41 67.42 75.75 69.29 71.75 70.39 74.71 71.27 67.52 67.74 74.29 67.76 67.75 68.88 68.44 67.71 64.92 66.29 71.99 64.51 62.47 70.45 68.59 59.09 71.77 68.38 70.88 69.21 69.80 70.70 70.51 68.47 70.65 69.21 68.25 70.94 69.97 71.22 70.01 67.13 68.99 67.42 69.77 69.11 69.99 70.45 K alternative_donor CG14642,CG34305 chr3R - chr3R_67810_67896 chr3R_67810_67879 chr3R_67700_67809;chr3R_67897_67958 85.71 94.44 88.89 100.00 85.71 87.50 NA 90.91 85.71 87.50 NA 70.59 NA NA 75.00 100.00 85.71 80.00 100.00 92.00 NA 100.00 84.62 72.00 93.33 NA 80.00 63.64 90.91 93.33 79.66 92.86 93.75 83.33 100.00 87.50 78.57 94.44 73.33 100.00 63.64 76.92 NA 80.00 80.95 80.95 80.95 93.33 87.50 75.00 80.00 81.82 80.00 83.33 NA 68.18 92.31 100.00 K intron_retention gd,I_chrX_11881464_11881506 chrX - chrX_11881240_11881303 chrX_11881239_11881240;chrX_11881303_11881304 chrX_11881083_11881239;chrX_11881304_11881454 33.33 NA NA NA NA NA NA NA 41.67 NA NA 30.77 NA NA NA NA NA NA NA 26.32 NA 75.00 NA NA NA NA NA NA NA NA 46.15 NA NA NA NA NA NA NA 33.33 NA NA 58.33 NA 28.57 NA NA NA 30.77 NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG42507,Trl,EI_chr3L_14750431_14750893,I_chr3L_14750431_14750985,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14750431_14750941;chr3L_14750431_14750762;chr3L_14750431_14751007;chr3L_14750431_14750893 chr3L_14750431_14750583 chr3L_14750331_14750430;chr3L_14751008_14751008 14.41 8.82 20.00 8.00 3.33 7.69 19.44 28.12 22.78 14.81 13.33 12.12 19.51 18.75 15.38 8.77 18.52 13.89 26.32 12.36 11.54 18.60 10.71 17.65 13.51 33.33 6.52 NA 12.77 21.74 8.11 22.58 19.15 23.53 8.89 22.45 7.32 6.45 12.82 12.63 28.00 19.74 26.47 13.89 29.55 21.18 5.71 25.44 12.86 23.64 13.51 11.36 11.36 14.00 17.78 15.91 12.50 21.79 K intron_retention norpA,I_chrX_4219265_4219380 chrX + chrX_4247647_4251072 chrX_4247646_4247647;chrX_4251072_4251073 chrX_4247500_4247646;chrX_4251073_4251309 58.33 NA NA 50.00 NA NA 50.00 53.85 80.00 NA NA NA 58.33 NA NA 75.00 60.00 NA NA 77.78 NA 58.33 46.15 NA NA NA 33.33 NA NA NA NA NA 50.00 83.33 60.00 31.58 69.23 NA NA 50.00 NA 68.75 77.78 53.33 NA NA NA 50.00 65.00 NA 47.06 NA NA NA 84.62 NA NA NA K alternative_acceptor CG16971,I_chr3L_225856_225909,RI_chr3L_225919_226004,noncoding_9600,RI_chr3L_229245_229590,I_chr3L_229245_229599,I_chr3L_229245_230186,I_chr3L_229653_229708 chr3L + chr3L_229245_229599 chr3L_229245_229588 chr3L_229145_229244;chr3L_229600_229652 99.44 100.00 97.96 100.00 100.00 97.83 99.40 100.00 99.65 98.72 98.78 100.00 98.99 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.80 98.63 99.38 99.16 98.48 97.96 98.04 98.68 98.67 100.00 98.84 100.00 97.98 100.00 98.53 98.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.44 97.92 98.11 100.00 94.64 99.44 99.28 99.39 100.00 97.92 100.00 100.00 99.07 100.00 98.15 K intron_retention Arf79F,I_chr3L_22863251_22864866,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22862347_22862445 chr3L_22862346_22862347;chr3L_22862445_22862446 chr3L_22861634_22862346;chr3L_22862446_22862571 0.10 0.00 0.00 0.00 0.00 0.34 0.00 0.32 0.25 0.00 0.00 0.24 0.00 0.00 0.00 0.36 0.23 0.00 0.00 0.13 0.00 0.37 0.28 0.29 0.41 0.00 0.47 0.48 0.62 0.00 0.00 0.16 0.21 0.00 0.46 0.82 0.15 0.00 0.23 0.29 0.28 0.19 0.00 0.00 0.11 0.10 0.00 0.11 0.19 0.00 0.30 0.00 0.00 0.00 0.00 0.34 0.00 0.00 K cassette Rala chrX - chrX_3600285_3602776 chrX_3600285_3601400;chrX_3601525_3602776 chrX_3601401_3601524 chrX_3599901_3600284;chrX_3602777_3602951 67.57 67.50 79.41 49.12 75.00 60.61 64.58 79.31 71.11 66.67 100.00 65.15 60.71 72.50 76.67 66.07 67.65 66.67 62.22 63.64 94.12 84.21 69.23 68.29 60.71 62.16 72.41 87.50 57.14 86.67 78.79 75.00 71.79 66.67 84.00 40.62 63.33 69.23 73.91 55.77 65.38 71.25 60.00 59.18 66.67 76.32 68.75 67.50 58.82 77.78 62.79 67.86 34.29 76.19 73.81 67.57 66.67 51.35 K alternative_donor CG14445 chrX + chrX_6133208_6133420 chrX_6133268_6133420 chrX_6133421_6133444;chrX_6132979_6133207 86.25 NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA 85.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K multi_cassette Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CE_chr2R_11826384_11826741,I_chr2R_11826763_11826990,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824089_11827414 chr2R_11824089_11825951;chr2R_11826484_11826541;chr2R_11826763_11827414 chr2R_11825952_11826483;chr2R_11826542_11826762 chr2R_11823989_11824088;chr2R_11827415_11827523 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Sulf1 chr3R - chr3R_12137186_12137248 chr3R_12137185_12137186;chr3R_12137248_12137249 chr3R_12137083_12137185;chr3R_12137249_12137446 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 9.68 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention p47,Aldh-III,RE_chr2R_3355332_3355720,I_chr2R_3356541_3356614,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3354556_3354987 chr2R_3354555_3354556;chr2R_3354987_3354988 chr2R_3354549_3354555;chr2R_3354988_3355138 42.11 42.11 33.33 64.29 33.33 50.00 64.29 22.22 32.61 NA NA 40.00 27.27 50.00 38.10 61.11 36.84 NA 44.44 46.34 35.29 90.00 50.00 38.10 64.29 57.14 43.75 NA NA NA 50.00 60.00 43.75 40.74 30.77 85.71 46.15 33.33 38.46 45.45 NA 40.00 46.15 33.33 53.33 68.18 53.85 66.67 37.14 50.00 37.04 NA 28.57 41.67 36.36 40.00 42.11 29.41 K intron_retention CanB2,CG12825 chr2R + chr2R_3675038_3675104 chr2R_3675037_3675038;chr2R_3675104_3675105 chr2R_3674969_3675037;chr2R_3675105_3675170 100.00 100.00 93.75 96.67 100.00 100.00 100.00 100.00 100.00 NA 100.00 96.30 100.00 93.75 100.00 95.00 100.00 100.00 94.12 97.14 93.33 88.89 91.67 100.00 91.67 95.00 100.00 90.00 94.44 NA 100.00 87.50 NA 100.00 88.89 92.86 91.67 100.00 92.86 92.31 NA 100.00 100.00 91.67 NA 100.00 100.00 100.00 95.83 100.00 100.00 100.00 77.78 100.00 100.00 100.00 92.86 92.31 K jcn_only_AD I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10068715,I_chr2R_10067437_10068984,I_chr2R_10068194_10068715 chr2R + chr2R_10068325_10068715;chr2R_10064197_10068715 chr2R_10067437_10068715 chr2R_10068716_10068805 98.04 97.17 96.05 91.76 95.59 98.04 98.18 94.85 99.50 98.86 100.00 97.78 97.78 91.67 96.49 96.88 100.00 97.37 98.11 97.00 96.49 99.11 100.00 98.80 98.17 96.36 99.28 100.00 100.00 97.20 94.12 97.53 97.58 97.35 100.00 90.00 100.00 100.00 99.60 99.38 87.10 96.62 95.56 98.31 98.26 94.12 96.80 96.30 99.17 100.00 98.12 98.91 97.30 98.32 98.36 99.21 99.25 87.27 K alternative_donor Aldolase,I_chr3R_22083764_22086684,I_chr3R_22086804_22086875 chr3R - chr3R_22083764_22086875;chr3R_22083764_22086879 chr3R_22083764_22087057 chr3R_22083664_22083763;chr3R_22087058_22087313 99.15 99.39 99.40 98.95 100.00 99.26 98.81 99.08 99.23 99.58 98.84 99.08 99.03 99.63 98.52 98.67 98.84 99.40 98.46 99.15 99.34 99.78 99.37 98.93 99.59 99.66 99.25 99.45 99.29 99.12 99.06 99.53 99.33 98.90 98.54 98.70 99.64 99.79 99.49 98.86 99.09 98.99 99.56 99.46 100.00 98.96 99.60 98.85 98.00 99.08 99.08 99.39 98.97 97.94 98.82 99.35 98.95 99.40 K alternative_donor Sas-4,I_chr3R_2978972_2979025 chr3R + chr3R_2978972_2979025 chr3R_2978975_2979025 chr3R_2979026_2979125;chr3R_2978872_2978971 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 83.33 NA NA NA 100.00 NA NA 100.00 94.44 100.00 100.00 90.00 NA NA NA NA 100.00 100.00 100.00 85.71 100.00 93.75 100.00 100.00 89.47 NA 92.31 NA 100.00 92.86 88.89 90.00 90.91 93.33 92.31 93.75 NA 90.91 100.00 88.89 100.00 91.67 88.89 K alternative_donor Ubi-p5E,E_chrX_6171360_6172728,E_chrX_6171636_6173159,E_chrX_6172320_6173159,I_chrX_6172787_6172907 chrX - chrX_6172787_6173168 chrX_6172787_6172907 chrX_6172734_6172786;chrX_6173169_6173259 0.14 0.00 0.00 0.18 0.00 0.00 0.23 0.00 0.00 0.63 0.00 0.20 0.00 0.36 0.00 0.31 0.00 0.00 0.34 0.20 0.00 0.16 0.00 0.40 0.66 0.00 0.22 0.86 0.96 0.00 0.24 0.00 0.39 0.23 0.28 0.51 0.00 0.00 0.41 0.21 0.28 0.00 0.48 0.00 0.00 0.14 0.21 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.32 0.00 0.30 0.30 K intron_retention Acf1,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27621935_27621992 chr3R_27621934_27621935;chr3R_27621992_27621993 chr3R_27620704_27621934;chr3R_27621993_27623460 0.00 0.00 0.00 29.03 0.00 0.00 2.38 2.13 5.13 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 12.90 0.00 0.00 0.00 0.00 0.00 NA NA 8.00 0.00 0.00 7.14 4.00 0.00 0.00 0.00 3.57 2.38 3.23 0.00 1.59 0.00 4.35 NA 9.09 NA 8.33 0.00 3.23 0.00 0.00 NA 0.00 2.38 0.00 0.00 9.09 N jcn_only_AD myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_715043_716322;chr4_715043_716708;chr4_715043_716482;chr4_715043_715839 chr4_715043_716613 chr4_714007_715042;chr4_716709_716712 3.70 5.56 0.00 1.43 4.76 3.23 8.14 4.55 9.33 NA 0.00 9.23 24.56 5.45 8.00 2.33 3.45 8.57 2.27 0.00 0.00 NA 6.25 NA NA 4.35 3.12 NA NA 3.70 7.50 NA NA 1.79 NA 0.00 0.00 NA NA 0.00 NA 6.76 4.44 5.26 NA NA NA 0.00 3.23 NA 6.06 7.41 NA NA 2.17 NA NA 0.00 K intron_retention CG2017 chr3R - chr3R_1686127_1687468 chr3R_1686126_1686127;chr3R_1687468_1687469 chr3R_1685454_1686126;chr3R_1687469_1687496 6.67 NA NA 6.67 NA NA 9.09 0.00 13.33 NA NA 0.00 NA NA NA 6.67 NA 7.69 14.29 0.00 NA NA NA NA NA NA 6.67 13.33 4.76 NA 0.00 NA 0.00 NA 0.00 0.00 6.67 NA NA 12.50 NA 15.00 NA 10.00 NA 0.00 NA 6.67 8.33 0.00 4.55 NA NA NA NA NA NA NA K jcn_only_AD CG7222 chr2R + chr2R_6701240_6701535;chr2R_6701242_6701535 chr2R_6700970_6701535 chr2R_6701536_6701719;chr2R_6700958_6700969 0.00 0.00 0.00 0.75 0.00 1.96 0.00 0.69 1.48 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.70 5.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.36 0.00 0.00 0.00 2.04 0.00 0.00 0.00 2.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 1.45 0.00 0.00 3.12 0.00 1.92 0.00 0.00 K jcn_only_AD Hel25E,I_chr2L_5540301_5540396 chr2L - chr2L_5540301_5540424;chr2L_5540301_5540396 chr2L_5540301_5540971 chr2L_5540201_5540300;chr2L_5540972_5541090 96.82 98.47 97.36 98.45 98.49 98.08 97.69 98.13 98.72 91.14 98.85 98.52 98.99 99.07 98.88 97.74 97.83 97.23 98.58 98.66 97.84 93.61 96.45 96.71 94.42 99.06 93.10 95.14 93.20 97.64 88.54 91.67 92.36 98.23 96.58 94.91 96.11 96.34 95.76 94.36 84.43 97.89 97.15 93.55 93.63 92.55 96.18 81.89 98.32 96.82 96.36 97.75 95.98 96.32 98.44 96.41 97.87 91.77 K intron_retention Tao-1,E_chrX_19467010_19469645 chrX - chrX_19469008_19469390 chrX_19469007_19469008;chrX_19469390_19469391 chrX_19468941_19469007;chrX_19469391_19470002 100.00 91.67 100.00 100.00 100.00 100.00 100.00 NA 92.86 93.33 100.00 85.71 NA NA NA NA NA NA NA 81.82 90.00 94.55 100.00 100.00 100.00 100.00 93.33 100.00 96.97 91.67 100.00 NA 92.86 100.00 100.00 NA 95.45 100.00 92.86 83.33 88.89 100.00 NA 100.00 NA 100.00 NA NA 76.92 100.00 92.31 NA NA NA NA 100.00 100.00 NA K intron_retention U26,fu12 chr2L - chr2L_8448354_8448424 chr2L_8448353_8448354;chr2L_8448424_8448425 chr2L_8447920_8448353;chr2L_8448425_8448706 7.69 NA NA 14.29 NA NA 0.00 0.00 8.00 NA NA 9.52 NA NA 0.00 11.11 NA NA NA 4.76 NA 16.67 NA 7.69 NA NA 15.38 NA NA NA 4.55 NA NA NA NA 7.14 8.33 NA 0.00 10.71 NA 4.35 NA NA NA NA NA 15.00 5.26 NA 15.79 NA NA NA 0.00 NA NA NA K intron_retention CG7536,I_chrX_17976413_17979287,I_chrX_17976413_17979359,CG7206 chrX - chrX_17976413_17976512 chrX_17976412_17976413;chrX_17976512_17976513 chrX_17976313_17976412;chrX_17976513_17976653 33.33 NA NA 38.46 NA NA NA 26.67 33.33 NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 45.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Spred,I_chr2R_10655876_10656868 chr2R - chr2R_10650580_10651335 chr2R_10650579_10650580;chr2R_10651335_10651336 chr2R_10650424_10650579;chr2R_10651336_10651504 4.92 3.08 7.50 0.00 5.26 4.65 4.08 8.00 5.38 4.76 5.26 8.82 5.41 4.35 4.00 9.38 26.09 4.88 7.14 4.82 5.71 9.26 3.17 10.00 4.17 5.71 4.69 43.75 10.53 4.44 4.26 0.00 10.00 3.39 7.69 6.98 0.00 3.64 5.26 7.58 5.88 2.35 5.71 3.28 5.41 4.92 4.65 6.12 7.46 12.12 3.12 0.00 2.56 4.55 4.17 3.77 0.00 6.45 K intron_retention Cdc42,I_chrX_19591186_19591967,I_chrX_19591567_19591967,I_chrX_19591671_19591967 chrX + chrX_19591259_19591967 chrX_19591258_19591259;chrX_19591967_19591968 chrX_19590992_19591258;chrX_19591968_19592067 2.09 3.20 1.42 1.30 2.87 2.26 1.51 1.92 1.95 2.66 1.80 1.82 1.25 1.81 1.36 1.22 1.24 2.22 2.13 1.71 1.78 3.23 2.11 2.91 3.85 1.77 2.88 1.73 2.60 2.29 2.18 2.16 1.54 1.76 3.00 2.98 2.85 2.56 3.63 1.96 2.34 2.17 1.07 2.01 1.82 2.09 2.09 2.08 2.32 3.23 2.52 1.30 1.29 2.83 2.50 2.23 1.41 1.25 K alternative_acceptor RluA-2,I_chr2L_10480906_10481097 chr2L + chr2L_10481571_10481646;chr2L_10481571_10481629 chr2L_10481571_10481621 chr2L_10481509_10481570;chr2L_10481647_10481707 57.14 NA 55.56 60.00 NA 57.14 68.42 50.00 80.00 NA 55.56 64.29 55.56 87.50 50.00 37.50 60.00 66.67 77.78 51.85 62.50 36.36 71.43 44.44 55.56 53.85 75.00 NA 50.00 46.15 30.56 83.33 53.85 63.16 54.55 25.00 50.00 57.14 63.64 60.00 50.00 61.11 83.33 62.50 62.50 50.00 70.00 52.63 57.14 50.00 71.43 80.00 50.00 36.36 69.23 50.00 60.00 41.67 K intron_retention JhI-21,I_chr2L_12055360_12055714 chr2L - chr2L_12052685_12052763 chr2L_12052684_12052685;chr2L_12052763_12052764 chr2L_12052560_12052684;chr2L_12052764_12053088 0.00 0.00 0.21 0.21 0.00 0.58 0.58 0.81 0.49 0.00 0.26 0.26 0.00 0.00 0.45 0.28 0.00 0.48 0.00 0.68 0.44 2.67 0.00 0.00 0.00 0.51 0.93 0.00 5.85 0.00 0.48 0.00 0.45 0.16 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.61 0.00 0.23 0.00 0.33 0.64 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 K intron_retention CG7337,I_chr2L_1910010_1910066,I_chr2L_1938620_1938887,I_chr2L_1942183_1942233 chr2L + chr2L_1937911_1938507 chr2L_1937910_1937911;chr2L_1938507_1938508 chr2L_1937866_1937910;chr2L_1938508_1938619 0.00 0.00 0.00 10.71 0.00 0.00 6.25 2.27 3.85 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 7.14 0.00 NA K intron_retention I_chrX_17751392_17751520,CG6769 chrX + chrX_17755713_17755870 chrX_17755712_17755713;chrX_17755870_17755871 chrX_17755050_17755712;chrX_17755871_17756233 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 K mutually_exclusive Hrb27C,I_chr2L_6924401_6924743 chr2L + chr2L_6920862_6922734,chr2L_6922827_6923783 chr2L_6920862_6920932,chr2L_6921074_6923783 chr2L_6922735_6922826 chr2L_6920933_6921073 chr2L_6920793_6920861;chr2L_6923784_6924400 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.47 NA 0.00 0.00 1.45 1.12 1.43 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 1.59 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Trx-2,I_chr2L_9613459_9615301,I_chr2L_9613592_9615301,E_chr2L_9615344_9615833,I_chr2L_9615252_9615301 chr2L + chr2L_9615252_9615301;chr2L_9613541_9615301 chr2L_9613376_9615301 chr2L_9615302_9615343;chr2L_9613359_9613375 0.00 0.00 0.00 0.23 0.33 0.00 0.00 0.00 0.25 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.15 0.00 0.00 0.00 0.04 0.05 0.10 0.18 0.00 0.00 0.00 0.00 0.10 0.12 0.00 0.00 0.12 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.06 0.07 0.00 0.00 0.00 0.00 0.04 0.00 0.13 K alternative_acceptor Vrp1,I_chr2R_17996482_17997091,I_chr2R_17996511_17997091,I_chr2R_17997529_17997692 chr2R - chr2R_17996485_17997091 chr2R_17996511_17997091 chr2R_17997092_17997191;chr2R_17996474_17996484 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 NA NA NA 95.74 NA NA NA NA 100.00 88.89 NA NA NA NA NA NA NA NA 88.89 NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA 90.91 100.00 NA NA NA NA NA NA NA K jcn_only_AA foi,I_chr3L_8524905_8524976 chr3L + chr3L_8524905_8524976 chr3L_8524905_8524966 chr3L_8524805_8524904;chr3L_8524977_8525076 98.53 99.27 98.44 98.66 98.51 99.52 97.44 98.48 98.90 98.97 98.92 98.62 98.73 98.58 98.92 99.16 99.09 98.49 98.53 99.00 98.80 98.30 98.88 97.41 97.94 97.02 97.71 98.45 97.56 98.76 97.81 97.71 97.89 99.37 98.52 99.04 98.81 98.60 98.52 97.94 97.46 98.96 99.51 98.68 96.12 98.94 98.28 96.45 98.84 97.50 97.44 98.41 98.94 98.33 98.55 98.88 97.86 97.09 K jcn_only_AA CG31997,I_chr4_175592_176390 chr4 - chr4_175575_175652 chr4_175592_175652 chr4_175653_175721;chr4_175514_175574 100.00 100.00 99.65 100.00 100.00 99.26 100.00 99.73 100.00 100.00 100.00 99.80 100.00 100.00 100.00 100.00 99.56 100.00 99.42 100.00 100.00 99.17 99.68 100.00 99.35 99.13 100.00 100.00 99.28 100.00 99.71 100.00 100.00 99.76 99.58 100.00 100.00 100.00 100.00 100.00 100.00 99.62 100.00 99.67 100.00 99.75 100.00 99.43 100.00 99.46 100.00 100.00 100.00 99.58 100.00 100.00 99.60 99.60 K cassette SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_16983380_17003999 chr3R_16983380_16999560;chr3R_17001356_17003999 chr3R_16999561_17001355 chr3R_16983337_16983379;chr3R_17004000_17004121 100.00 100.00 100.00 96.49 100.00 100.00 100.00 100.00 99.15 100.00 92.86 99.05 100.00 97.87 100.00 97.96 100.00 97.78 96.00 100.00 100.00 98.80 98.96 100.00 100.00 100.00 98.63 96.08 100.00 98.53 100.00 100.00 100.00 100.00 100.00 98.44 100.00 100.00 100.00 99.10 100.00 100.00 97.73 100.00 98.15 98.36 97.92 98.89 98.97 100.00 100.00 97.87 100.00 100.00 100.00 100.00 97.83 98.44 K alternative_donor CaMKI,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,RI_chr4_467374_467424,RI_chr4_467482_467543,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_467273_467446;chr4_467374_467446 chr4_467378_467446 chr4_467447_467481;chr4_467266_467272 71.43 83.33 66.67 71.43 NA 83.33 83.33 69.23 68.42 NA 100.00 72.73 63.64 70.00 100.00 68.75 NA 80.00 77.78 73.68 60.00 100.00 80.00 100.00 60.00 66.67 71.43 NA NA NA 66.67 NA NA 68.75 NA NA NA NA NA 66.67 NA 64.29 100.00 66.67 NA NA NA NA 88.89 NA 83.33 83.33 NA NA 77.78 60.00 71.43 NA K jcn_only_AD CaMKII,I_chr4_1069766_1069812,I_chr4_1071236_1071307,RI_chr4_1071236_1071315,I_chr4_1071489_1071884,RI_chr4_1071489_1071968,I_chr4_1071569_1071884,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1071236_1071968;chr4_1071236_1071813;chr4_1071236_1072054;chr4_1071236_1071319 chr4_1071236_1071884 chr4_1071136_1071235;chr4_1072055_1072059 0.00 NA 0.00 1.12 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 2.04 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K jcn_only_AA CG7970 chr3L + chr3L_1653044_1653141 chr3L_1653044_1653130 chr3L_1652975_1653043;chr3L_1653142_1653254 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG10366 chr2L + chr2L_19585916_19585982 chr2L_19585915_19585916;chr2L_19585982_19585983 chr2L_19584630_19585915;chr2L_19585983_19586456 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 11.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor MB8.chr3R.pasa.66,Alh,I_chr3R_2927820_2933442,RI_chr3R_2946518_2946663 chr3R - chr3R_2944771_2945183 chr3R_2944771_2945156 chr3R_2944680_2944770;chr3R_2945184_2946604 14.84 NA NA 15.38 NA NA NA NA 12.50 NA NA NA NA NA NA 15.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention noncoding_23539 chrX - chrX_13524964_13527597 chrX_13524963_13524964;chrX_13527597_13527598 chrX_13524746_13524963;chrX_13527598_13527689 90.00 NA NA 100.00 NA NA 93.75 92.31 88.89 NA NA 88.89 NA NA NA 92.31 NA NA NA NA NA NA 88.89 NA NA NA 72.73 NA 90.00 NA NA 100.00 NA 88.89 100.00 NA NA NA NA 90.91 88.89 NA NA 88.89 NA 100.00 NA 82.35 100.00 NA 87.50 NA NA NA NA NA NA NA K alternative_donor dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21309092_21310000;chr2L_21309092_21309994;chr2L_21309092_21309579;chr2L_21309092_21309938 chr2L_21309092_21309945 chr2L_21308992_21309091;chr2L_21310001_21310009 7.42 NA 15.79 7.69 6.25 NA 7.69 12.50 8.16 5.56 13.04 10.26 8.33 5.56 21.74 4.35 NA NA 10.00 13.79 5.88 4.35 4.35 4.76 NA 22.22 10.71 0.00 3.12 NA 14.29 0.00 6.67 11.54 0.00 3.33 NA 8.33 6.67 7.14 NA 7.89 NA 4.17 8.33 0.00 NA 0.00 19.05 NA NA 5.88 NA NA 12.50 NA NA NA N intron_retention noncoding_20850,CG11093,RF_chr4_983355_984342 chr4 - chr4_983355_983652 chr4_983354_983355;chr4_983652_983653 chr4_983255_983354;chr4_983653_983772 35.29 32.00 35.71 45.71 NA NA 44.83 34.21 30.51 NA 46.67 47.83 NA 38.89 NA 41.46 41.18 NA 26.32 23.08 NA NA 25.00 25.00 NA NA NA NA NA NA NA NA NA 46.15 23.08 NA NA NA NA 40.00 NA 35.29 47.06 30.77 NA NA NA NA 43.18 31.58 NA 23.53 NA NA 40.00 NA 13.21 21.05 K intron_retention Klc,I_chr3L_12741783_12742943,I_chr3L_12741838_12743062 chr3L - chr3L_12740304_12740374 chr3L_12740303_12740304;chr3L_12740374_12740375 chr3L_12739998_12740303;chr3L_12740375_12740854 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 1.10 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.52 0.00 0.32 0.00 0.00 1.07 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG10732,I_chr3L_13438999_13439071 chr3L + chr3L_13438740_13438838 chr3L_13438740_13438835 chr3L_13437468_13438739;chr3L_13438839_13438998 68.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.95 NA NA NA NA NA NA NA 68.00 NA NA NA NA 58.33 NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA 77.27 NA NA NA NA NA NA NA NA NA NA K jcn_only_AD sar1,I_chr3R_18185148_18185246 chr3R + chr3R_18182472_18183252;chr3R_18182521_18183252;chr3R_18182490_18183252 chr3R_18182467_18183252 chr3R_18183253_18183393;chr3R_18182460_18182466 6.18 5.06 7.47 4.21 10.00 7.57 7.39 7.65 6.52 1.37 6.80 7.58 6.83 7.36 4.27 7.11 4.41 4.83 7.80 5.87 7.08 1.33 7.43 1.69 8.91 6.36 8.33 4.05 4.60 10.23 8.18 4.14 5.19 8.53 7.07 6.06 4.35 4.26 2.19 6.44 7.87 6.38 5.20 7.34 6.18 7.18 5.49 11.21 5.56 2.42 5.99 7.38 6.16 6.06 5.81 5.36 3.52 3.54 K alternative_acceptor CG30372,coilin,I_chr2R_4012973_4013037,RI_chr2R_4012976_4013037 chr2R - chr2R_4012976_4013037;chr2R_4012979_4013037 chr2R_4012973_4013037 chr2R_4013038_4013137;chr2R_4012876_4012972 0.00 11.11 9.09 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 7.14 16.67 NA 0.00 8.33 0.00 0.00 0.00 6.25 0.00 NA 0.00 0.00 0.00 14.29 0.00 NA 14.29 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA 10.00 0.00 9.09 8.33 NA 0.00 0.00 10.00 0.00 NA NA 0.00 0.00 11.11 0.00 K intron_retention Pkc98E chr3R + chr3R_24867963_24868547 chr3R_24867962_24867963;chr3R_24868547_24868548 chr3R_24867889_24867962;chr3R_24868548_24868571 34.52 NA 38.89 24.00 NA NA 42.86 40.00 30.00 NA 35.71 39.47 50.00 NA 31.58 33.33 25.00 NA NA 15.56 NA NA NA NA 80.00 NA NA NA NA NA 26.67 NA NA 33.33 50.00 NA NA NA 41.67 46.15 NA 30.00 26.32 NA NA NA NA 56.25 30.77 NA 38.46 NA NA NA 28.57 NA NA NA K intron_retention CG5694,RI_chr2L_10229956_10231366 chr2L - chr2L_10229127_10229184 chr2L_10229126_10229127;chr2L_10229184_10229185 chr2L_10227829_10229126;chr2L_10229185_10229346 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention CG12112,CG12111 chrX - chrX_8453892_8453953 chrX_8453891_8453892;chrX_8453953_8453954 chrX_8453812_8453891;chrX_8453954_8454022 0.00 0.00 0.00 2.53 0.00 0.00 1.12 1.73 0.00 0.00 0.00 0.61 0.00 1.15 1.94 0.00 0.00 1.32 0.00 0.52 0.00 0.00 1.79 0.90 0.00 0.00 5.05 5.26 14.29 0.00 0.81 0.00 0.00 0.56 0.00 0.00 0.00 1.10 0.00 0.00 6.67 1.98 0.00 2.02 0.00 0.00 0.00 5.26 0.00 0.00 0.97 0.00 0.00 0.00 0.00 2.50 0.00 0.00 K alternative_acceptor dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21309092_21309579;chr2L_21309019_21309579;chr2L_21309084_21309579 chr2L_21308996_21309579 chr2L_21309580_21309679;chr2L_21308992_21308995 18.34 NA NA 25.00 NA NA 14.29 12.50 12.50 NA NA NA NA NA NA 23.08 33.33 NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA 14.29 NA NA NA 25.00 NA 9.09 20.00 NA NA NA NA NA NA NA NA NA K alternative_donor Trx-2,I_chr2L_9613459_9615301,I_chr2L_9613592_9615301,E_chr2L_9615344_9615833,I_chr2L_9615252_9615301 chr2L + chr2L_9615252_9615301;chr2L_9613541_9615301 chr2L_9613376_9615301 chr2L_9615302_9615343;chr2L_9613359_9613375 0.00 0.00 0.00 0.46 0.68 0.00 0.00 0.00 0.79 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.62 0.00 0.00 0.00 0.18 0.22 0.42 0.74 0.00 0.00 0.00 0.00 0.41 0.49 0.00 0.00 0.48 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.25 0.27 0.00 0.00 0.00 0.00 0.17 0.00 0.50 K alternative_donor Rcd6,I_chr2R_16518342_16520460,I_chr2R_16518620_16518916,RI_chr2R_16520388_16520855 chr2R - chr2R_16518620_16518916;chr2R_16518620_16520294 chr2R_16518620_16520855 chr2R_16518520_16518619;chr2R_16520856_16520918 0.00 NA 0.00 20.00 0.00 NA 33.33 0.00 0.00 NA NA 33.33 0.00 0.00 0.00 0.00 0.00 0.00 33.33 12.50 NA 0.00 0.00 25.00 0.00 33.33 0.00 33.33 33.33 0.00 33.33 NA 25.00 0.00 33.33 0.00 0.00 50.00 NA 0.00 NA 0.00 NA 33.33 0.00 33.33 NA 25.00 20.00 NA NA NA NA NA 0.00 NA NA 33.33 K intron_retention EF_chr2R_8548702_8595112,nemy chr2R - chr2R_8558855_8559061 chr2R_8558854_8558855;chr2R_8559061_8559062 chr2R_8558580_8558854;chr2R_8559062_8559646 1.67 2.22 0.00 0.00 3.28 0.00 4.65 0.00 2.35 2.30 1.39 1.48 0.00 1.82 0.00 0.00 0.00 6.06 0.00 0.60 0.00 3.24 1.25 2.76 3.17 2.13 3.60 3.78 1.32 0.68 2.44 0.00 0.95 0.00 2.78 2.00 1.92 0.00 1.88 1.67 1.27 1.25 3.92 1.78 0.93 2.48 0.00 0.00 2.53 2.78 3.50 2.86 0.70 1.96 0.00 2.24 1.96 1.45 K alternative_acceptor mld chr3R + chr3R_20445827_20445894 chr3R_20445827_20445891 chr3R_20441773_20445826;chr3R_20445895_20445957 100.00 100.00 NA 100.00 88.89 NA 100.00 100.00 100.00 100.00 NA 92.86 100.00 NA NA 90.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA NA 88.89 NA NA 100.00 93.33 NA NA 96.67 100.00 100.00 100.00 NA 94.12 88.89 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 87.50 NA 93.75 88.89 NA K alternative_acceptor Eno,I_chr2L_1726650_1727645,I_chr2L_1726656_1727485,EI_chr2L_1727403_1727645,I_chr2L_1728229_1728302 chr2L - chr2L_1726650_1727645;chr2L_1727403_1727645;chr2L_1727559_1727645 chr2L_1726656_1727645 chr2L_1727646_1727735;chr2L_1726556_1726649 100.00 100.00 99.51 100.00 100.00 100.00 100.00 100.00 99.74 99.68 99.42 99.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.74 100.00 99.57 99.75 100.00 99.68 100.00 99.58 98.21 100.00 99.46 100.00 100.00 100.00 100.00 100.00 100.00 99.87 99.76 100.00 100.00 100.00 99.73 100.00 100.00 100.00 99.46 99.58 100.00 100.00 99.72 99.71 100.00 100.00 100.00 100.00 99.65 99.66 100.00 K jcn_only_AA CG12582 chr3R + chr3R_23285_23458 chr3R_23285_23350 chr3R_23137_23284;chr3R_23459_23593 1.83 1.97 1.57 2.49 0.52 0.93 14.29 3.96 3.06 5.36 2.51 0.96 4.26 1.66 1.87 1.77 1.79 1.83 4.50 1.81 1.03 16.83 0.38 1.02 2.80 9.33 2.65 1.95 9.70 1.75 2.80 2.19 2.20 2.02 2.84 3.72 0.97 1.28 0.00 1.04 6.40 4.09 1.32 1.97 2.59 1.80 0.78 2.69 1.43 0.53 1.80 2.40 1.30 1.28 1.56 0.84 0.66 1.80 K cassette gish chr3R + chr3R_12123068_12124191 chr3R_12123068_12123766;chr3R_12123845_12124191 chr3R_12123767_12123844 chr3R_12122897_12123067;chr3R_12124192_12124272 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA bdg,I_chr2R_11824086_11824186,CEI_chr2R_11826763_11827279 chr2R - chr2R_11812934_11812999 chr2R_11812937_11812999 chr2R_11813000_11814186;chr2R_11812769_11812933 54.17 53.68 57.89 56.69 37.65 53.19 49.04 48.59 54.17 46.99 47.62 52.10 47.69 54.35 55.34 48.82 56.76 51.09 67.71 57.45 50.00 56.35 52.45 48.28 53.57 57.29 64.29 63.51 57.50 51.40 58.54 60.81 66.02 61.14 51.65 64.84 52.98 53.54 63.35 51.67 50.00 56.48 62.96 59.83 55.79 59.43 53.92 48.82 46.40 48.48 70.29 52.33 52.00 57.63 54.17 58.11 58.89 61.80 K intron_retention Fur2,RI_chrX_16267905_16268958,I_chrX_16270205_16270272,I_chrX_16274795_16274867 chrX + chrX_16274509_16274570 chrX_16274508_16274509;chrX_16274570_16274571 chrX_16274221_16274508;chrX_16274571_16274794 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 K jcn_only_AA fs(1)h,I_chrX_7947328_7948140,I_chrX_7950171_7952371,I_chrX_7954192_7955240 chrX - chrX_7947313_7948155 chrX_7947328_7948155 chrX_7948156_7948240;chrX_7947228_7947312 95.08 94.81 95.65 95.65 92.65 93.59 87.36 97.74 94.74 92.73 93.33 93.55 100.00 93.94 93.69 98.53 96.72 100.00 97.22 95.60 92.19 97.90 89.66 95.15 91.84 97.22 100.00 95.00 95.59 95.28 96.00 NA 95.71 97.79 94.74 100.00 97.42 91.76 98.50 94.93 95.24 97.46 93.24 93.75 94.34 90.20 97.06 94.31 96.63 94.12 95.70 93.10 93.88 85.19 96.67 91.67 96.30 88.89 K intron_retention Slip1,RI_chr4_684967_689045,I_chr4_685717_686576,RI_chr4_685717_689045,RI_chr4_687548_689045 chr4 + chr4_685932_686576 chr4_685931_685932;chr4_686576_686577 chr4_685883_685931;chr4_686577_686676 0.00 0.00 0.00 5.48 0.00 0.00 0.00 2.41 0.00 0.00 0.00 2.86 6.25 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.74 0.00 0.00 0.00 NA 0.00 0.00 2.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention foi,I_chr3L_8520658_8520733,I_chr3L_8524905_8524976 chr3L + chr3L_8518805_8523659 chr3L_8518804_8518805;chr3L_8523659_8523660 chr3L_8518753_8518804;chr3L_8523660_8524249 4.41 3.28 4.48 7.92 3.33 1.64 4.21 4.46 2.89 3.77 1.64 3.92 0.00 2.86 2.38 4.17 5.71 3.26 4.48 3.60 4.41 16.79 4.21 5.80 4.17 1.27 10.29 6.06 34.92 5.06 4.26 0.00 6.45 10.08 10.71 6.76 1.59 3.39 1.52 4.35 10.61 5.43 3.39 6.58 4.35 5.00 4.44 6.57 5.10 4.88 7.69 5.26 3.57 0.00 4.72 7.41 4.26 7.07 K intron_retention B52,F_chr3R_9488762_9491174,E_chr3R_9488770_9491174,RI_chr3R_9489655_9489713 chr3R + chr3R_9489655_9489733 chr3R_9489654_9489655;chr3R_9489733_9489734 chr3R_9489631_9489654;chr3R_9489734_9489796 33.33 43.75 30.43 NA 35.71 41.67 45.00 64.71 58.54 25.00 23.53 39.53 55.56 47.62 57.14 43.33 50.00 36.84 47.37 41.18 30.00 36.84 28.26 22.22 30.43 60.00 25.00 13.33 12.50 26.32 21.28 33.33 9.09 44.83 47.06 6.67 22.50 20.00 30.77 23.08 NA 40.62 62.50 21.43 33.33 16.00 20.00 38.89 48.57 15.00 18.92 26.32 30.77 42.86 44.00 26.92 26.67 42.86 K intron_retention CG10289,I_chr3L_6163043_6163216 chr3L - chr3L_6166637_6166859 chr3L_6166636_6166637;chr3L_6166859_6166860 chr3L_6166477_6166636;chr3L_6166860_6166938 0.00 0.00 0.00 6.78 0.00 0.00 0.00 0.00 1.14 0.00 5.88 2.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 6.78 2.27 0.00 0.00 5.71 3.64 0.00 3.85 0.00 0.00 NA NA 7.69 0.00 0.00 0.00 NA 0.00 4.55 NA 0.00 0.00 8.33 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 K intron_retention faf,RI_chr3R_27603474_27603893,I_chr3R_27620212_27620267,RI_chr3R_27624356_27624427 chr3R + chr3R_27613461_27613523 chr3R_27613460_27613461;chr3R_27613523_27613524 chr3R_27612869_27613460;chr3R_27613524_27613919 0.70 1.85 0.00 3.45 2.50 0.00 1.32 2.17 2.59 0.00 0.00 1.51 0.95 1.00 1.80 2.36 2.70 0.00 0.00 0.81 1.89 0.00 0.00 1.32 0.00 0.00 4.29 6.25 0.00 3.88 1.32 0.00 1.80 2.20 0.00 2.00 0.70 0.00 0.00 0.51 0.00 0.48 3.19 0.00 0.00 0.00 1.44 0.00 1.59 1.00 1.78 0.00 0.00 0.00 2.24 0.00 0.00 0.00 K intron_retention CG10741,CG17689 chr3L + chr3L_13494315_13494382 chr3L_13494314_13494315;chr3L_13494382_13494383 chr3L_13494000_13494314;chr3L_13494383_13495504 1.27 0.60 2.05 1.99 1.35 0.00 2.48 1.20 2.71 0.00 2.26 1.94 2.67 3.08 2.99 1.16 2.27 0.58 1.75 1.74 0.00 1.42 0.85 0.81 1.08 1.71 6.32 7.36 1.25 0.35 0.83 1.47 1.09 2.32 0.47 1.87 1.62 1.14 1.82 0.80 0.00 1.82 0.00 1.27 0.67 1.26 1.56 0.75 2.51 0.33 1.27 2.86 0.42 0.76 1.04 2.03 0.88 0.89 K intron_retention Aps,I_chr3L_10889978_10891195,I_chr3L_10891545_10891823 chr3L - chr3L_10891545_10891835 chr3L_10891544_10891545;chr3L_10891835_10891836 chr3L_10891445_10891544;chr3L_10891836_10891923 100.00 98.78 100.00 100.00 100.00 98.82 99.37 99.53 99.59 100.00 98.65 99.47 100.00 100.00 99.00 99.46 99.11 98.61 100.00 100.00 98.77 100.00 100.00 98.65 98.46 98.25 98.89 100.00 100.00 97.59 100.00 97.67 100.00 100.00 100.00 95.45 100.00 98.36 100.00 100.00 98.39 99.49 98.98 100.00 98.11 100.00 100.00 99.09 100.00 100.00 100.00 100.00 100.00 97.22 99.22 98.25 100.00 100.00 K intron_retention EloA chr3R + chr3R_19079265_19079322 chr3R_19079264_19079265;chr3R_19079322_19079323 chr3R_19079047_19079264;chr3R_19079323_19079417 0.00 0.00 0.00 9.38 0.00 0.00 1.59 0.00 4.94 0.00 0.00 1.59 2.94 7.41 0.00 3.28 0.00 0.00 0.00 3.95 2.56 26.47 2.13 1.92 4.17 0.00 5.66 0.00 10.71 0.00 4.55 0.00 0.00 3.92 0.00 10.00 0.00 0.00 2.38 8.51 10.00 5.13 0.00 0.00 5.56 0.00 0.00 6.67 4.92 5.56 0.00 0.00 0.00 0.00 8.51 0.00 0.00 0.00 K intron_retention CG14964 chr3L - chr3L_3176846_3176905 chr3L_3176845_3176846;chr3L_3176905_3176906 chr3L_3175432_3176845;chr3L_3176906_3177660 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor Atg4,RI_chr2L_1082666_1082719 chr2L + chr2L_1082666_1082791 chr2L_1082666_1082788 chr2L_1082566_1082665;chr2L_1082792_1082819 94.12 88.89 90.00 100.00 100.00 NA 100.00 91.67 100.00 88.89 87.50 93.75 NA NA 88.89 NA NA 90.00 NA 94.12 NA 93.33 89.29 94.74 100.00 NA 100.00 100.00 100.00 91.67 90.00 NA 100.00 100.00 94.44 91.67 92.86 100.00 89.47 100.00 93.75 95.45 NA 92.31 100.00 100.00 96.67 70.00 94.44 100.00 100.00 100.00 92.31 90.91 93.75 93.75 86.36 100.00 K alternative_donor Rpn5 chr3R + chr3R_1615416_1615491;chr3R_1615433_1615491 chr3R_1615437_1615491 chr3R_1615492_1616546;chr3R_1615400_1615415 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor Gprk2 chr3R + chr3R_27259611_27279032 chr3R_27259611_27259861 chr3R_27259181_27259610;chr3R_27279033_27279128 30.00 28.57 29.03 15.56 41.18 38.89 41.46 28.89 41.30 29.41 8.33 26.92 36.00 29.03 32.35 20.00 33.33 18.52 29.03 27.42 25.00 10.26 39.29 31.03 56.25 25.00 31.43 53.85 12.82 20.51 28.57 44.44 21.88 29.17 36.84 15.15 31.03 30.00 39.13 35.71 52.38 30.91 35.00 11.36 38.46 37.04 26.09 25.00 36.17 27.78 37.93 36.84 15.00 36.36 34.48 33.33 25.00 23.08 K intron_retention E_chr2RHet_2881760_2912543,eIF-4B,I_chr2RHet_2903246_2904697,I_chr2RHet_2903246_2912532,I_chr2RHet_2904787_2912543,I_chr2RHet_2912605_2917250 chr2RHet + chr2RHet_2903246_2903321 chr2RHet_2903245_2903246;chr2RHet_2903321_2903322 chr2RHet_2903146_2903245;chr2RHet_2903322_2903592 81.80 94.44 81.25 92.86 NA 94.44 77.78 80.00 80.00 60.00 68.42 86.84 49.23 88.46 68.75 97.78 71.43 86.67 82.35 76.47 63.16 NA 93.75 78.57 88.89 83.33 95.65 88.89 73.68 78.95 78.26 82.50 56.67 89.58 85.19 57.14 NA NA NA 53.85 66.67 89.74 90.00 70.59 70.00 87.50 82.35 64.15 87.93 89.29 96.43 78.57 75.00 81.25 88.89 75.86 96.55 85.71 K jcn_only_AA RpL27A,E_chr2L_4457411_4457977,I_chr2L_4458058_4458120 chr2L - chr2L_4457290_4457374;chr2L_4457319_4457374 chr2L_4457275_4457374 chr2L_4457375_4457410;chr2L_4457188_4457274 0.00 0.00 0.00 0.05 0.04 0.00 0.03 0.00 0.02 0.00 0.00 0.03 0.03 0.00 0.00 0.03 0.00 0.06 0.03 0.02 0.00 0.00 0.00 0.03 0.00 0.00 0.00 2.23 0.07 0.00 0.03 0.04 0.03 0.02 0.00 0.00 0.00 0.00 0.09 0.02 0.03 0.04 0.00 0.06 0.00 0.00 0.00 0.00 0.02 0.03 0.00 0.00 0.00 0.00 0.02 0.00 0.03 0.00 K jcn_only_AA Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16046111,I_chr3L_16057100_16057329 chr3L + chr3L_16055963_16056187 chr3L_16055963_16056184 chr3L_16055812_16055962;chr3L_16056188_16056265 35.58 37.31 35.60 41.49 31.97 34.53 31.46 34.68 38.44 38.01 37.56 37.46 35.81 29.66 32.82 38.33 37.50 37.24 29.25 37.09 40.10 33.09 38.14 32.23 41.82 34.43 36.18 36.90 35.92 34.75 36.51 43.01 32.93 40.07 34.20 35.19 35.04 32.74 35.38 35.61 37.39 34.70 38.16 35.58 27.06 33.57 34.22 37.48 37.83 33.12 33.47 39.42 31.25 34.31 37.85 30.71 34.19 33.61 K multi_cassette Jupiter,I_chr3R_7417030_7419354,I_chr3R_7418347_7445425,RE_chr3R_7419487_7429863,I_chr3R_7429934_7430307,I_chr3R_7429962_7445425,I_chr3R_7430006_7445425,RI_chr3R_7442748_7445425,RI_chr3R_7442793_7445425 chr3R - chr3R_7418347_7445425 chr3R_7418347_7419354;chr3R_7419489_7429863;chr3R_7429962_7445425 chr3R_7419355_7419488;chr3R_7429864_7429961 chr3R_7418247_7418346;chr3R_7445426_7445525 45.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention nes chr3L - chr3L_19253331_19253632 chr3L_19253330_19253331;chr3L_19253632_19253633 chr3L_19253215_19253330;chr3L_19253633_19253779 29.29 26.32 22.22 26.67 28.00 29.41 35.29 41.18 31.43 21.05 NA 35.90 33.33 34.62 33.33 32.43 43.75 35.29 27.27 31.71 NA 42.86 20.00 25.81 36.84 39.13 41.67 41.18 31.43 26.32 25.93 23.53 24.00 32.43 24.00 52.00 28.57 NA 31.58 29.55 31.58 31.25 0.00 17.24 31.82 24.24 13.33 20.37 21.57 NA 25.93 29.17 19.05 26.32 16.22 NA 41.67 16.67 K jcn_only_AD RhoBTB,RI_chr3L_20370940_20371530,I_chr3L_20374844_20374891 chr3L + chr3L_20369702_20371530 chr3L_20370940_20371530 chr3L_20371531_20371630;chr3L_20369433_20369701 0.00 3.85 0.00 0.00 0.00 0.00 0.00 2.38 0.00 5.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 3.23 0.00 0.00 NA 3.57 0.00 0.00 NA 0.00 0.00 NA 0.00 4.26 0.00 4.17 1.85 NA 0.00 NA 0.00 NA 0.00 NA 4.00 2.50 6.45 0.00 4.17 NA NA 3.33 NA NA NA K intron_retention CG9967 chr2L - chr2L_2309291_2309515 chr2L_2309290_2309291;chr2L_2309515_2309516 chr2L_2308834_2309290;chr2L_2309516_2309702 5.90 NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA 17.65 14.29 NA 7.69 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 6.25 NA NA 5.56 NA NA 0.00 NA NA NA NA 7.14 NA NA NA NA NA NA 0.00 0.00 K jcn_only_AA CG42390 chr3R + chr3R_17956315_17956373 chr3R_17956315_17956368 chr3R_17956306_17956314;chr3R_17956374_17956519 96.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 92.00 NA NA NA NA NA NA NA NA NA 96.30 96.43 NA NA NA NA NA NA NA K intron_retention not chr3L - chr3L_18613470_18613530 chr3L_18613469_18613470;chr3L_18613530_18613531 chr3L_18613359_18613469;chr3L_18613531_18613932 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 2.70 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 5.56 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32982,I_chr2L_9127467_9148754,EF_chr2L_9135385_9148841,F_chr2L_9149162_9154658 chr2L + chr2L_9127467_9135117 chr2L_9127466_9127467;chr2L_9135117_9135118 chr2L_9127456_9127466;chr2L_9135118_9135181 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K alternative_last_exon CG4615,CG4617 chrX - chrX_6996421_6996867 chrX_6996743_6996867 chrX_6996109_6996420 chrX_6996583_6996742 chrX_6996868_6997762 10.55 0.00 16.67 23.08 NA 0.00 25.00 27.27 23.53 0.00 20.00 14.29 16.67 16.67 0.00 60.00 0.00 14.29 20.00 0.00 0.00 0.00 7.14 7.69 11.11 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 22.22 14.29 0.00 0.00 10.00 7.69 9.09 0.00 12.50 20.00 0.00 10.00 16.67 18.18 14.29 20.00 25.00 0.00 0.00 14.29 11.11 0.00 20.00 42.86 11.11 K jcn_only_AA enc chr3L + chr3L_3832544_3832616 chr3L_3832544_3832601 chr3L_3832451_3832543;chr3L_3832617_3832758 23.08 27.66 18.75 23.47 23.08 26.15 31.40 19.10 23.48 37.10 26.53 19.23 21.82 28.99 15.38 19.32 30.91 17.31 29.41 19.23 18.60 18.92 26.55 28.57 26.83 47.73 16.67 17.86 29.41 21.54 16.13 29.41 20.59 28.05 14.63 24.53 24.74 14.29 17.33 23.81 20.45 16.03 22.81 20.51 16.22 26.47 26.47 22.92 26.61 32.61 26.67 23.53 21.05 10.00 15.05 26.47 31.03 20.83 K jcn_only_AD I_chrX_15223901_15223968,HDAC6,I_chrX_15232958_15233665 chrX + chrX_15232738_15233659;chrX_15232958_15233659 chrX_15232699_15233659 chrX_15233660_15234340;chrX_15232108_15232698 22.22 10.00 17.39 51.72 15.62 17.39 NA 30.77 20.75 NA NA 14.58 NA 19.05 22.73 NA 23.81 33.33 NA 8.33 10.00 30.77 22.45 16.28 21.21 29.17 26.47 43.48 13.33 31.25 4.88 8.00 29.79 26.32 18.52 30.77 25.29 13.46 25.37 30.51 27.27 21.57 25.00 19.35 13.85 25.00 23.81 18.52 20.83 40.00 22.22 15.00 19.61 22.41 29.03 8.57 18.33 25.00 K intron_retention kay,E_chr3R_25616137_25617114 chr3R + chr3R_25617443_25617508 chr3R_25617442_25617443;chr3R_25617508_25617509 chr3R_25617115_25617442;chr3R_25617509_25619852 0.23 0.00 0.00 0.40 0.36 0.32 0.30 0.36 0.36 0.19 0.16 0.17 0.41 0.00 0.14 0.36 0.56 0.16 0.00 0.36 0.00 0.51 0.40 0.24 0.36 0.37 1.15 2.99 0.32 0.00 0.00 0.00 0.00 0.34 0.00 0.26 0.15 0.25 0.28 0.23 0.51 0.08 0.22 0.14 0.44 0.00 0.15 0.27 0.47 0.22 0.23 0.00 0.00 0.00 0.15 0.00 0.32 0.27 K jcn_only_AD CG7115,I_chr2L_7821309_7822922,I_chr2L_7821387_7822675,I_chr2L_7821643_7822641,I_chr2L_7821649_7822675,RI_chr2L_7822057_7822675 chr2L + chr2L_7821649_7822641 chr2L_7822057_7822641 chr2L_7822642_7822741;chr2L_7821549_7821648 95.83 NA 95.83 85.71 NA NA 86.21 92.50 90.91 NA NA 97.44 NA 90.00 100.00 97.44 NA NA NA 88.00 NA NA NA 80.00 NA NA 96.77 NA 100.00 NA NA NA 100.00 97.06 86.36 83.33 NA NA NA 96.30 100.00 89.66 NA NA NA 100.00 87.50 100.00 96.55 NA 95.83 NA NA NA 91.30 NA NA 100.00 K intron_retention Dcp2,F_chr3L_15815909_15816023,F_chr3L_15817090_15817547 chr3L - chr3L_15815112_15815170 chr3L_15815111_15815112;chr3L_15815170_15815171 chr3L_15814221_15815111;chr3L_15815171_15815908 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.38 0.00 9.86 1.16 0.00 1.75 1.45 1.19 2.00 41.18 2.70 0.00 0.00 0.00 0.00 2.27 2.94 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 8.33 1.39 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 NA K jcn_only_AD Trf4-1,I_chrX_8455293_8457185,RI_chrX_8455791_8457185,R_chrX_8455801_8457185,I_chrX_8455902_8457185,I_chrX_8459198_8459266 chrX + chrX_8454992_8457185;chrX_8455100_8457185 chrX_8454847_8457185 chrX_8457186_8457285;chrX_8454674_8454846 86.54 89.66 86.11 91.94 84.00 86.11 90.91 93.55 84.06 NA NA 78.87 88.00 79.49 90.48 86.27 75.00 92.00 79.41 88.24 80.77 NA 89.66 92.68 96.00 78.26 86.36 NA NA NA 86.84 NA NA 94.55 NA 90.00 NA NA 90.32 77.78 NA 82.19 88.24 65.00 NA NA 81.82 NA 88.73 NA 86.54 89.29 NA NA 86.49 75.00 NA NA K jcn_only_AD CG12753,CG14894,RI_chr3R_12268071_12268135,RI_chr3R_12268071_12268141,RI_chr3R_12268071_12268661,Pak3 chr3R - chr3R_12268071_12268661;chr3R_12268071_12268145;chr3R_12268071_12268124;chr3R_12268071_12268141 chr3R_12268071_12268135 chr3R_12267971_12268070;chr3R_12268662_12268688 3.70 2.50 4.05 2.67 2.13 8.33 4.48 2.86 3.12 6.25 0.00 1.85 4.44 0.00 2.60 3.28 3.70 6.35 0.00 5.31 5.56 3.17 2.67 3.67 2.13 2.63 6.06 4.76 4.92 7.14 12.22 6.76 2.20 4.08 4.92 4.17 5.71 5.26 5.00 4.03 3.45 1.57 2.27 1.43 2.30 4.24 3.81 1.43 5.97 3.23 2.35 8.82 4.71 5.95 3.70 3.03 2.66 7.41 K alternative_donor plexA,RI_chr4_1036247_1047588,RI_chr4_1040642_1047395,RI_chr4_1044307_1046841,RF_chr4_1044307_1047399 chr4 - chr4_1044307_1047395;chr4_1044307_1047588 chr4_1044307_1047399 chr4_1044207_1044306;chr4_1047589_1047625 11.11 0.00 16.67 26.67 NA 28.57 20.00 23.08 17.24 NA NA 11.11 6.67 28.57 NA 14.63 0.00 NA 15.38 5.88 NA 0.00 16.67 NA 20.00 NA 0.00 NA 25.00 0.00 0.00 NA NA 11.76 0.00 0.00 NA NA NA 12.50 NA 20.00 14.29 0.00 NA NA NA 10.00 10.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K alternative_donor ben chrX + chrX_13890789_13892127;chrX_13890791_13892127;chrX_13891016_13892127;chrX_13890762_13892127;chrX_13890795_13892127;chrX_13890990_13892127;chrX_13890831_13892127;chrX_13890768_13892127;chrX_13890648_13892127 chrX_13890793_13892127 chrX_13892128_13892800;chrX_13890644_13890647 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 K jcn_only_AD Mical,I_chr3R_5834577_5835458,I_chr3R_5843939_5844218,I_chr3R_5847106_5863537,I_chr3R_5863483_5863537,I_chr3R_5863613_5868513 chr3R - chr3R_5840828_5840905 chr3R_5840828_5840896 chr3R_5840712_5840827;chr3R_5840906_5840969 65.52 50.00 45.45 76.92 59.09 NA 66.67 58.14 65.52 87.50 NA 75.00 60.61 61.54 57.69 77.42 NA 100.00 74.19 76.32 65.00 60.66 55.88 66.67 60.71 74.19 67.86 NA 52.63 58.33 71.11 73.91 63.33 65.00 64.71 58.62 80.77 NA 67.74 65.71 80.00 58.46 NA 64.52 NA NA NA 76.92 66.67 NA 62.50 76.19 NA NA 62.96 NA NA 65.71 K jcn_only_AD CG7192,RI_chrX_17993756_17994097 chrX - chrX_17993756_17995125 chrX_17993756_17994097 chrX_17993656_17993755;chrX_17995126_17995239 1.04 0.00 1.59 1.20 0.00 2.90 0.00 0.95 2.08 1.39 0.00 0.97 0.00 2.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 6.35 0.00 0.00 4.84 0.00 0.96 4.55 6.90 2.02 1.28 0.00 1.10 2.11 1.33 3.80 0.00 0.00 1.79 2.08 1.54 0.57 0.00 1.25 8.82 1.04 1.08 1.45 0.00 0.00 0.00 0.00 1.64 0.00 1.39 0.00 1.28 2.99 K alternative_acceptor aPKC,I_chr2R_10833552_10833654,RI_chr2R_10849347_10850391 chr2R - chr2R_10833596_10833654;chr2R_10832733_10833654 chr2R_10833552_10833654 chr2R_10833655_10833754;chr2R_10832714_10832732 4.00 5.56 5.00 4.26 12.50 6.67 2.04 2.00 5.17 10.00 9.09 4.76 4.35 3.57 5.88 3.64 5.26 11.76 3.70 2.86 6.67 0.00 2.86 4.00 0.00 7.69 4.76 10.00 4.35 0.00 4.17 14.29 3.57 4.00 4.00 4.00 0.00 0.00 0.00 2.38 7.41 5.26 13.64 3.85 11.76 2.56 0.00 7.14 2.22 3.70 3.03 0.00 7.69 0.00 4.55 0.00 0.00 4.88 K multi_cassette Eph,I_chr4_631523_634240,I_chr4_631555_631910,I_chr4_631643_631910,I_chr4_632065_634240,I_chr4_632433_632707,I_chr4_632433_632988,I_chr4_639690_640473,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_631523_634240 chr4_631523_631910;chr4_632065_632138;chr4_632282_632352;chr4_632433_634240 chr4_631911_632064;chr4_632139_632281;chr4_632353_632432 chr4_631455_631522;chr4_634241_634340 100.00 100.00 100.00 84.38 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 K intron_retention CG8531,RI_chr2R_10144869_10144912 chr2R + chr2R_10144227_10144291 chr2R_10144226_10144227;chr2R_10144291_10144292 chr2R_10143991_10144226;chr2R_10144292_10144868 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 4.12 1.08 1.15 0.83 0.81 1.29 2.13 0.00 0.00 0.00 0.00 1.14 0.59 0.00 1.87 0.91 1.25 1.07 1.49 0.00 0.80 0.00 0.00 0.00 1.77 0.00 0.00 0.56 0.75 1.70 0.00 0.98 0.00 0.00 1.31 0.88 0.00 K alternative_acceptor CG12582 chr3R + chr3R_29885_29987;chr3R_29885_29934 chr3R_29885_29940 chr3R_29816_29884;chr3R_29988_30053 3.96 4.05 5.51 5.62 2.60 5.34 4.35 5.68 3.92 4.40 3.23 2.89 3.33 3.28 4.68 5.47 5.30 4.35 5.15 4.13 3.76 2.84 2.60 3.31 4.31 3.25 3.85 4.91 3.81 5.24 8.39 5.17 3.23 1.96 4.55 12.57 3.22 2.55 3.69 4.28 3.10 3.96 3.64 3.46 2.13 2.85 2.24 3.63 5.10 4.13 3.80 3.23 5.20 4.22 4.09 4.36 1.65 4.69 K alternative_acceptor CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20346738_20347206 chr3L_20346738_20347058 chr3L_20346638_20346737;chr3L_20347207_20347505 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA 100.00 100.00 NA NA 90.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 NA 90.00 100.00 NA NA NA NA 100.00 NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention CG12582 chr3R + chr3R_23285_23350 chr3R_23284_23285;chr3R_23350_23351 chr3R_23137_23284;chr3R_23351_23593 30.95 NA NA 36.36 NA NA 4.76 33.33 40.00 NA NA NA NA NA NA NA NA NA NA 46.15 NA NA NA NA NA 6.25 NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Csk,I_chr3R_7463337_7463512,I_chr3R_7468917_7472437,I_chr3R_7468917_7472509,I_chr3R_7468928_7472509 chr3R - chr3R_7463337_7472509 chr3R_7463336_7463337;chr3R_7472509_7472510 chr3R_7463237_7463336;chr3R_7472510_7472537 62.86 64.29 NA 72.73 NA 77.78 70.97 76.00 62.86 41.67 NA 59.09 46.15 38.46 64.29 82.35 NA NA 66.67 30.00 NA NA 69.23 61.54 80.00 46.15 66.67 NA NA NA 50.00 NA 60.00 70.83 NA 50.00 NA NA NA 57.14 NA 47.83 72.73 NA NA NA NA 53.33 80.95 NA 58.33 72.73 NA NA 56.25 NA NA NA N intron_retention Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2604280_2629140 chr3L_2604279_2604280;chr3L_2629140_2629141 chr3L_2602428_2604279;chr3L_2629141_2629526 4.65 NA NA 4.65 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG13367 chrX + chrX_539947_540022 chrX_539951_540022 chrX_540023_540419;chrX_538794_539946 0.00 0.00 NA 0.00 NA NA NA 4.35 2.94 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 5.00 0.00 0.00 NA NA 0.00 0.00 NA 4.55 0.00 NA 0.00 0.00 0.00 3.23 0.00 NA 0.00 NA 0.00 0.00 4.35 0.00 NA 4.17 0.00 0.00 NA 0.00 4.76 NA 0.00 0.00 0.00 K intron_retention CG30466 chr2R + chr2R_11460263_11460317 chr2R_11460262_11460263;chr2R_11460317_11460318 chr2R_11459183_11460262;chr2R_11460318_11460675 29.67 NA NA NA NA NA 47.06 35.00 28.57 NA NA 25.00 NA NA NA 31.58 NA NA 14.29 19.23 NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA 36.84 NA NA NA NA NA NA NA NA NA N alternative_acceptor Rpn5 chr3R + chr3R_1615349_1615402 chr3R_1615349_1615399 chr3R_1615211_1615348;chr3R_1615403_1615415 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 42.86 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K jcn_only_AD Dscam,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3249373_3250528;chr2R_3249373_3251682;chr2R_3249373_3254309;chr2R_3249373_3253447;chr2R_3249373_3252522;chr2R_3249373_3252236;chr2R_3249373_3252816;chr2R_3249373_3250836;chr2R_3249373_3251960;chr2R_3249373_3251099 chr2R_3249373_3253970 chr2R_3249273_3249372 4.00 0.00 2.13 3.12 8.00 6.45 5.00 1.72 3.66 0.00 NA 0.00 2.70 5.88 2.44 3.77 2.78 0.00 28.57 1.11 8.00 13.75 8.57 2.78 10.64 4.00 10.81 6.45 7.14 3.53 9.80 7.14 2.50 7.27 6.45 2.38 12.73 2.63 12.20 4.49 3.45 6.15 0.00 5.17 0.00 7.89 0.00 3.49 2.99 NA 8.89 5.00 0.00 NA 5.77 5.00 NA 2.17 K jcn_only_AD CG9323 chr2L - chr2L_20754938_20754992 chr2L_20754938_20754988 chr2L_20754809_20754937;chr2L_20754993_20755265 5.88 6.90 7.14 2.56 NA 6.45 5.88 7.69 3.77 NA 4.00 5.26 8.33 7.41 0.00 8.33 5.00 4.55 5.56 3.75 4.35 7.69 6.82 4.65 NA NA 3.12 0.00 12.50 7.69 14.71 3.45 7.32 7.81 2.44 8.33 5.13 3.70 6.25 4.84 3.28 7.35 3.57 5.56 7.27 10.71 2.38 5.00 4.26 11.86 5.13 5.88 10.00 12.12 2.50 9.09 20.83 10.17 K alternative_last_exon CG12424,noncoding_6924 chr2R + chr2R_10851431_10859234 chr2R_10851431_10851505 chr2R_10859235_10860261 chr2R_10851506_10851667 chr2R_10851390_10851430 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 K intron_retention HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13159070_13159162 chrX_13159069_13159070;chrX_13159162_13159163 chrX_13158970_13159069;chrX_13159163_13159296 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.64 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.58 0.00 0.37 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31793 chr2L + chr2L_19004427_19004492 chr2L_19004426_19004427;chr2L_19004492_19004493 chr2L_19004273_19004426;chr2L_19004493_19006291 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 3.85 NA 0.00 0.00 0.00 0.00 NA 0.00 1.69 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 5.00 NA 0.00 2.70 NA 0.00 NA 0.00 NA NA NA 0.00 10.53 0.00 0.00 NA NA NA NA NA NA NA K jcn_only_AD CG31998,I_chr4_225419_226294 chr4 - chr4_225419_226474;chr4_225419_226284 chr4_225419_226366 chr4_225319_225418;chr4_226475_226518 88.56 NA NA 93.85 NA NA 90.32 91.49 92.50 NA NA 82.50 69.57 96.15 NA 88.24 NA NA 70.00 88.00 NA NA 90.00 NA NA NA NA NA NA NA NA NA NA 88.24 NA 100.00 NA NA NA NA NA 88.89 NA NA NA NA NA NA 87.76 NA NA NA NA NA 86.36 NA NA NA K alternative_donor CG6178 chr3R + chr3R_19978381_19978811;chr3R_19978271_19978811 chr3R_19978326_19978811 chr3R_19978812_19979489;chr3R_19978101_19978270 92.31 88.89 94.44 91.30 92.86 93.75 78.79 89.29 86.05 100.00 93.33 90.00 100.00 95.00 90.48 90.91 94.44 94.12 80.00 95.00 100.00 94.44 88.89 100.00 90.91 87.50 100.00 100.00 88.24 100.00 86.36 93.33 89.47 91.67 90.91 100.00 100.00 90.91 95.00 84.21 100.00 94.12 86.67 90.91 75.00 94.74 89.47 87.50 93.94 91.67 100.00 100.00 100.00 90.00 85.00 92.31 90.91 96.30 K alternative_donor cnc,I_chr3R_19014852_19016738,I_chr3R_19046366_19046507,I_chr3R_19046619_19047567 chr3R - chr3R_19046366_19046507;chr3R_19046366_19047567 chr3R_19046366_19047563 chr3R_19046266_19046365;chr3R_19047568_19047667 28.57 20.00 25.00 36.36 33.33 20.00 30.00 31.25 11.11 16.67 0.00 35.71 16.67 37.50 37.50 33.33 20.00 25.00 50.00 11.11 NA 27.27 36.36 20.00 25.00 12.50 25.00 0.00 14.29 40.00 40.00 25.00 36.36 27.27 37.50 33.33 NA NA 50.00 35.29 16.67 42.11 14.29 30.00 NA 25.00 NA 41.67 28.57 NA 28.57 40.00 NA NA 37.50 33.33 NA 25.00 K jcn_only_AD CaMKI,I_chr4_467862_471815,I_chr4_470923_470996,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_470923_470996 chr4_470943_470996 chr4_470997_471096;chr4_470868_470922 95.45 95.83 94.12 96.55 NA NA 96.15 90.77 96.05 NA NA 94.74 100.00 100.00 88.89 95.24 88.46 100.00 90.00 97.18 NA NA 100.00 NA NA NA NA NA NA NA 95.45 NA NA 92.65 95.45 90.91 NA NA 100.00 96.00 NA 96.77 NA 90.00 NA 95.83 100.00 NA 94.59 84.00 95.45 93.10 NA NA 95.00 95.65 95.24 89.66 K cassette E_chr3R_6935653_7037028,nocturnin,I_chr3R_7023571_7030286,RI_chr3R_7026291_7032627,I_chr3R_7029508_7030286 chr3R + chr3R_7029508_7032627;chr3R_7026291_7032627;chr3R_7023571_7032627 chr3R_7026291_7030286,chr3R_7023571_7030286,chr3R_7029508_7030286;chr3R_7030554_7032627 chr3R_7030287_7030553 chr3R_7023471_7023570;chr3R_7032628_7032727 85.71 76.47 90.48 90.00 92.31 94.44 82.76 96.88 88.10 90.00 81.82 85.71 95.24 91.30 89.47 92.00 86.67 92.86 89.66 85.37 84.62 88.24 93.75 75.00 71.43 69.57 64.71 66.67 83.33 85.71 87.88 85.71 85.71 83.72 90.91 60.00 91.67 75.00 83.33 84.21 70.00 86.84 81.25 90.91 77.78 73.33 86.67 85.71 88.24 70.00 62.50 80.00 76.92 64.29 95.45 78.57 93.75 90.48 K intron_retention Cyp4d1 chrX - chrX_2053598_2053657 chrX_2053597_2053598;chrX_2053657_2053658 chrX_2053214_2053597;chrX_2053658_2054281 55.16 NA NA NA NA NA NA NA 46.67 NA NA NA NA NA NA NA NA NA NA NA NA 38.46 NA NA NA NA NA NA NA NA 73.33 NA NA NA NA NA NA NA NA NA NA 63.64 NA NA NA NA NA 63.64 NA NA NA NA NA NA NA NA 33.33 NA K intron_retention Gp93,E_chr3R_23774640_23777523 chr3R + chr3R_23775739_23775777 chr3R_23775738_23775739;chr3R_23775777_23775778 chr3R_23775064_23775738;chr3R_23775778_23776316 100.00 100.00 99.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.94 100.00 99.90 99.88 100.00 100.00 100.00 100.00 99.86 99.86 99.86 99.89 100.00 99.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.85 100.00 100.00 100.00 100.00 99.89 99.88 99.90 100.00 100.00 99.86 100.00 99.81 99.78 100.00 100.00 100.00 99.90 K alternative_donor rtGEF,I_chr2L_20359184_20360012,I_chr2L_20359856_20360012 chr2L + chr2L_20356802_20360012 chr2L_20359856_20360012 chr2L_20360013_20360112;chr2L_20356590_20356801 4.71 2.88 3.19 1.77 2.63 4.41 6.45 2.83 4.07 6.25 2.27 3.29 5.26 4.29 2.97 10.14 2.63 4.00 4.35 4.27 2.44 15.64 5.58 4.57 5.65 4.71 9.26 15.57 6.16 6.47 5.80 4.35 14.47 3.81 8.57 14.77 5.08 5.80 6.21 6.38 5.41 3.09 5.77 6.34 3.12 5.11 4.76 6.00 4.03 6.56 6.40 7.89 3.80 4.00 4.60 3.79 2.68 3.23 K intron_retention flfl,EI_chr3R_9513221_9513291,CG14367 chr3R + chr3R_9515908_9515995 chr3R_9515907_9515908;chr3R_9515995_9515996 chr3R_9515635_9515907;chr3R_9515996_9516108 38.46 30.77 54.55 26.67 36.36 71.43 30.77 27.78 37.84 38.46 63.64 36.36 58.33 46.15 47.37 36.36 75.00 42.86 45.00 36.67 NA 50.00 27.27 33.33 31.25 71.43 33.33 23.53 36.36 NA 41.67 NA 48.00 40.00 53.33 26.32 43.33 25.00 37.50 38.46 38.46 41.18 NA 42.86 NA 41.67 35.71 52.63 45.16 31.25 13.33 31.58 50.00 NA 53.85 NA NA 54.55 K jcn_only_AD Mpcp chr3L + chr3L_14530803_14531103;chr3L_14530949_14531103 chr3L_14530935_14531103 chr3L_14531104_14531521;chr3L_14530797_14530802 1.66 1.69 2.27 2.72 1.14 1.36 1.43 3.95 0.79 0.21 0.80 2.37 1.05 3.02 1.36 4.38 0.31 1.76 1.72 1.54 1.50 1.01 2.66 1.56 1.52 1.99 3.44 1.42 2.55 3.52 2.08 3.73 2.33 2.87 4.85 5.88 0.44 1.59 0.65 1.49 5.93 1.14 2.21 1.66 1.45 0.45 2.04 1.40 1.33 1.65 3.20 1.56 1.28 4.74 2.17 0.98 1.86 1.79 K alternative_donor twin,RI_chr3R_20032242_20045321 chr3R - chr3R_20046286_20047530;chr3R_20046286_20047514 chr3R_20046286_20047526 chr3R_20046254_20046285;chr3R_20047531_20047647 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 K intron_retention EI_chr3R_11090999_11091648,Oscp,I_chr3R_11091413_11092154 chr3R + chr3R_11091413_11091648 chr3R_11091412_11091413;chr3R_11091648_11091649 chr3R_11091313_11091412;chr3R_11091649_11091748 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.99 0.76 1.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 K intron_retention Dsp1,I_chrX_16231287_16231413 chrX + chrX_16228273_16228333 chrX_16228272_16228273;chrX_16228333_16228334 chrX_16228086_16228272;chrX_16228334_16228446 85.21 92.59 91.67 89.74 94.12 93.75 90.38 90.48 90.54 62.50 69.57 88.37 85.71 94.44 85.00 96.49 96.00 75.00 93.33 89.36 93.75 72.00 76.92 79.17 84.21 91.30 84.62 58.33 83.33 53.85 77.78 63.64 66.67 85.42 87.10 92.31 70.37 83.33 81.25 85.71 75.00 88.64 88.24 62.96 NA 68.75 80.00 85.00 91.30 75.86 82.50 90.91 93.75 93.75 85.71 80.00 73.68 71.43 K intron_retention CG4030 chr2R - chr2R_16976871_16976934 chr2R_16976870_16976871;chr2R_16976934_16976935 chr2R_16976735_16976870;chr2R_16976935_16977719 0.96 6.06 2.17 3.12 0.00 4.44 4.35 1.82 3.96 0.00 0.00 5.56 3.12 7.41 2.44 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 1.67 0.00 0.00 4.26 0.00 0.00 2.70 2.94 0.00 0.00 3.57 5.56 2.38 2.82 0.00 0.00 2.70 6.25 2.38 0.00 0.00 0.00 2.78 1.54 0.00 7.04 0.00 0.00 0.00 0.00 0.00 3.77 3.17 0.00 1.37 K intron_retention Pkc98E chr3R + chr3R_24870160_24870218 chr3R_24870159_24870160;chr3R_24870218_24870219 chr3R_24870089_24870159;chr3R_24870219_24871440 0.00 0.00 0.00 7.50 0.00 0.00 0.00 5.88 1.47 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 NA 0.00 0.00 0.00 4.65 0.00 0.00 0.00 15.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.56 0.00 0.00 0.00 0.00 0.00 2.38 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA K intron_retention CG9339,I_chr2L_20877678_20903015,I_chr2L_20882465_20889794,I_chr2L_20903560_20918638,I_chr2L_20922613_20922685 chr2L - chr2L_20874433_20876911 chr2L_20874432_20874433;chr2L_20876911_20876912 chr2L_20874274_20874432;chr2L_20876912_20877083 4.21 4.44 2.44 9.43 1.82 0.00 6.49 1.98 5.04 0.00 14.75 6.98 0.00 3.12 2.27 6.25 5.80 0.00 0.00 6.35 5.33 10.53 5.13 6.15 6.82 4.35 2.50 6.67 2.44 9.43 2.94 6.67 25.00 2.91 3.28 4.41 4.59 4.08 1.04 4.35 NA 5.00 7.14 5.00 0.00 0.00 0.00 11.11 3.39 3.85 2.86 5.26 0.00 0.00 2.83 0.00 0.00 10.53 K alternative_donor Pegarn chr3L + chr3L_12783425_12784534;chr3L_12783483_12784534 chr3L_12783350_12784534 chr3L_12784535_12784733;chr3L_12783320_12783349 33.33 NA NA NA NA NA 16.67 16.67 41.67 NA NA NA NA NA NA 27.27 NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA 33.33 33.33 70.00 NA NA NA NA NA NA NA 50.00 50.00 NA NA NA 44.44 NA 50.00 16.67 NA NA NA NA NA NA NA NA 33.33 K intron_retention I_chr3R_8822346_8822403,CG7518 chr3R + chr3R_8825736_8825792 chr3R_8825735_8825736;chr3R_8825792_8825793 chr3R_8825574_8825735;chr3R_8825793_8825938 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.80 3.51 0.00 0.00 0.00 6.82 0.00 0.00 1.09 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 7.69 0.00 0.00 0.00 1.72 0.00 3.51 0.00 0.00 0.00 0.00 12.00 11.11 NA K jcn_only_AD CG3683 chr2R + chr2R_20551970_20552030 chr2R_20551980_20552030 chr2R_20552031_20552202;chr2R_20551911_20551969 72.63 NA NA 84.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 77.27 NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA 65.00 68.00 NA NA NA NA NA NA NA NA 81.82 K intron_retention CG14230 chrX + chrX_19598622_19598682 chrX_19598621_19598622;chrX_19598682_19598683 chrX_19598252_19598621;chrX_19598683_19598972 0.00 5.88 0.00 9.30 0.00 0.00 14.29 2.56 7.25 0.00 0.00 6.90 0.00 0.00 4.65 0.00 0.00 0.00 0.00 7.50 0.00 17.50 6.52 3.12 6.25 2.94 6.12 0.00 2.13 3.77 0.00 0.00 2.67 0.00 0.00 10.71 5.06 9.09 0.00 5.26 6.67 1.79 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 10.94 6.06 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10741,CG17689 chr3L + chr3L_13489247_13493999 chr3L_13489246_13489247;chr3L_13493999_13494000 chr3L_13488487_13489246;chr3L_13494000_13494314 5.26 2.28 6.52 12.08 4.60 5.15 5.45 11.18 5.86 3.37 4.88 5.43 3.03 7.95 6.72 11.61 5.26 20.77 6.90 2.86 9.47 11.16 5.45 2.75 2.97 6.90 7.66 16.67 7.69 5.08 5.80 2.82 10.38 5.41 3.68 2.30 2.23 4.47 1.83 2.70 2.63 5.77 5.26 4.14 2.03 2.06 2.80 5.71 5.69 3.73 5.33 6.40 1.50 1.52 6.12 3.27 3.21 1.95 K alternative_acceptor RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12922514_12922850;chr2R_12922514_12923159 chr2R_12922514_12923162 chr2R_12922340_12922513;chr2R_12923163_12923912 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.81 0.00 0.65 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 1.12 2.08 0.00 0.00 0.00 0.00 0.00 1.25 K jcn_only_AA Zyx102EF,I_chr4_1078380_1078835,I_chr4_1080463_1081366,REF_chr4_1081261_1081452,F_chr4_1081280_1081398,F_chr4_1081280_1081452 chr4 - chr4_1078666_1078835;chr4_1078778_1078835;chr4_1078782_1078835 chr4_1078644_1078835 chr4_1078836_1078848;chr4_1078433_1078643 0.00 NA NA 4.17 NA NA 0.00 5.26 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 10.34 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 2.86 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG8051,I_chrX_19197569_19197669 chrX - chrX_19197569_19197669 chrX_19197573_19197669 chrX_19197670_19197769;chrX_19197469_19197568 95.83 95.00 88.00 92.00 100.00 95.65 100.00 97.22 97.62 93.33 100.00 97.73 94.12 100.00 96.30 96.30 92.31 90.48 82.61 100.00 94.74 90.91 93.55 93.10 100.00 95.65 94.59 100.00 97.62 100.00 90.48 88.89 93.02 100.00 95.00 95.83 97.22 95.65 100.00 92.86 97.06 92.59 100.00 95.00 97.44 96.43 93.75 97.78 100.00 100.00 96.55 100.00 95.65 100.00 95.24 100.00 88.89 91.89 K cassette Eph,I_chr4_631523_634240,I_chr4_632065_634240,I_chr4_632433_632707,I_chr4_632433_632988,I_chr4_639690_640473,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_632065_634240;chr4_632282_634240 chr4_632065_632352,chr4_632282_632352;chr4_632433_634240 chr4_632353_632432 chr4_631965_632064;chr4_634241_634340 100.00 100.00 96.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 96.67 100.00 98.11 100.00 100.00 97.14 98.04 100.00 100.00 97.22 100.00 100.00 100.00 96.55 100.00 100.00 94.44 100.00 NA 85.71 97.56 100.00 93.75 100.00 93.75 95.00 100.00 NA 97.92 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 NA K jcn_only_AD chinmo chr2L + chr2L_1651713_1652774;chr2L_1651412_1652774 chr2L_1651430_1652774 chr2L_1652775_1653511;chr2L_1651300_1651411 11.86 NA 4.55 14.58 NA 13.79 12.90 12.24 6.25 NA NA 8.57 10.71 6.45 16.00 13.33 NA 9.09 0.00 22.64 NA NA 22.22 NA NA NA NA NA NA NA 4.00 NA 9.09 16.36 NA NA NA NA NA 8.57 NA 11.48 NA 2.78 NA 13.04 NA 18.42 9.62 NA 13.04 NA NA NA 29.17 NA NA NA K intron_retention opa1-like,I_chr2R_10119470_10120234,I_chr2R_10121848_10121900,I_chr2R_10122128_10122197,I_chr2R_10122334_10122393 chr2R - chr2R_10118344_10118399 chr2R_10118343_10118344;chr2R_10118399_10118400 chr2R_10118125_10118343;chr2R_10118400_10118604 1.06 0.00 0.00 1.35 0.00 0.00 1.17 1.45 2.29 0.00 1.41 2.35 4.44 0.00 1.06 0.00 0.99 2.27 2.15 1.06 0.00 0.00 1.13 0.00 0.00 4.12 1.78 4.31 9.33 0.00 0.00 2.90 3.23 1.91 0.00 1.40 1.00 0.00 0.00 0.00 4.51 2.01 0.00 1.22 2.17 1.70 0.53 1.26 0.55 0.00 1.08 0.83 0.88 1.76 1.40 1.06 2.02 0.36 K multi_cassette p120ctn,I_chr2R_482968_494268,I_chr2R_487593_493262 chr2R + chr2R_482968_494268 chr2R_482968_486773;chr2R_487426_487488;chr2R_487593_494268 chr2R_486774_487425;chr2R_487489_487592 chr2R_482868_482967;chr2R_494269_494368 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 98.39 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.26 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 K alternative_donor E2f2 chr2L - chr2L_21155682_21155746 chr2L_21155682_21155743 chr2L_21155572_21155681;chr2L_21155747_21156245 100.00 100.00 100.00 97.96 100.00 100.00 97.83 100.00 98.68 100.00 100.00 98.33 100.00 100.00 100.00 97.92 100.00 97.30 100.00 98.51 97.22 100.00 97.96 100.00 100.00 100.00 97.73 96.43 95.45 100.00 96.88 96.43 100.00 100.00 100.00 100.00 100.00 97.37 100.00 97.73 100.00 98.44 100.00 100.00 96.00 96.88 100.00 100.00 98.46 97.30 98.08 100.00 100.00 96.88 100.00 100.00 100.00 92.00 K intron_retention katanin-60 chr3R - chr3R_1053913_1053998 chr3R_1053912_1053913;chr3R_1053998_1053999 chr3R_1053095_1053912;chr3R_1053999_1054558 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 4.76 0.00 0.00 2.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 K alternative_donor CG3125,I_chrX_5637946_5638135,I_chrX_5637946_5641134,I_chrX_5656715_5657974 chrX - chrX_5637946_5640804 chrX_5637946_5638388 chrX_5637846_5637945;chrX_5640805_5640900 100.00 100.00 100.00 80.00 62.50 100.00 100.00 92.86 100.00 100.00 100.00 87.50 83.33 100.00 100.00 92.86 85.71 100.00 90.00 94.44 100.00 100.00 90.00 87.50 100.00 100.00 87.50 90.91 71.43 100.00 87.50 80.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 93.33 100.00 87.50 100.00 87.50 100.00 94.44 93.33 100.00 100.00 100.00 100.00 66.67 90.00 100.00 100.00 83.33 K jcn_only_AA Sec16,I_chrX_12501913_12502010,I_chrX_12502899_12502973 chrX + chrX_12498831_12498896 chrX_12498831_12498893 chrX_12498681_12498830;chrX_12498897_12499421 92.42 89.36 88.89 92.42 82.50 90.62 92.54 88.73 96.94 96.88 97.30 97.26 83.33 92.68 85.37 84.62 92.86 92.73 86.67 95.61 93.62 91.89 90.32 95.45 88.24 83.33 94.83 93.75 97.96 95.92 89.83 97.22 92.65 80.77 86.11 96.08 94.44 75.64 96.23 88.52 90.48 88.61 81.82 85.92 97.44 90.62 93.18 95.83 88.64 100.00 98.15 83.72 92.86 92.00 90.74 75.93 97.06 100.00 K alternative_last_exon PGRP-LC,E_chr3L_9335847_9338977 chr3L + chr3L_9338168_9339690;chr3L_9338168_9338708 chr3L_9338168_9340739 chr3L_9339691_9339845;chr3L_9338709_9338860 chr3L_9340740_9341541 chr3L_9338000_9338167 12.50 13.33 16.67 25.00 10.00 25.00 9.09 14.29 7.14 11.11 16.67 6.67 14.29 9.09 9.09 7.14 16.67 7.14 16.67 7.69 0.00 8.33 5.26 13.33 14.29 30.00 20.00 8.33 22.22 14.29 0.00 10.00 12.50 14.29 10.00 37.50 11.76 15.38 14.29 18.75 12.50 11.11 11.11 16.67 6.25 12.50 16.67 5.88 21.05 4.55 5.56 22.22 8.33 14.29 20.00 27.27 12.00 8.33 K jcn_only_AA CG6171,I_chr3R_11188806_11188873,CG34404,CG14868 chr3R - chr3R_11188806_11188873 chr3R_11188820_11188873 chr3R_11188874_11188973;chr3R_11188706_11188805 100.00 100.00 100.00 NA 95.24 NA 100.00 100.00 97.56 NA NA 100.00 NA NA 100.00 100.00 NA 95.45 NA 98.33 NA 100.00 97.30 97.50 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 90.91 97.22 96.43 100.00 100.00 100.00 97.78 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 98.04 100.00 100.00 100.00 100.00 100.00 96.55 100.00 NA K intron_retention CG5316 chr3R + chr3R_15229545_15229614 chr3R_15229544_15229545;chr3R_15229614_15229615 chr3R_15229332_15229544;chr3R_15229615_15229840 22.22 30.77 27.27 36.36 20.00 28.57 24.32 26.19 31.58 NA 19.05 24.14 29.41 19.05 22.22 26.83 12.50 16.00 26.32 26.79 24.00 NA 24.00 29.17 23.53 23.33 15.38 NA NA 14.29 18.18 NA 26.67 28.57 NA 64.71 23.81 0.00 8.33 16.00 NA 16.67 17.65 12.50 NA NA 9.52 NA 23.81 19.05 16.67 0.00 9.09 NA 18.52 NA 13.04 6.25 K alternative_acceptor gw,I_chr4_675416_675686,I_chr4_675425_677852,I_chr4_679135_681671 chr4 - chr4_675416_675686 chr4_675425_675686 chr4_675687_675786;chr4_675325_675415 100.00 100.00 100.00 99.04 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 98.00 98.21 100.00 100.00 100.00 100.00 100.00 99.07 100.00 100.00 100.00 98.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 98.67 100.00 100.00 100.00 K intron_retention RpS27 chr3R - chr3R_21072088_21072169 chr3R_21072087_21072088;chr3R_21072169_21072170 chr3R_21072035_21072087;chr3R_21072170_21072238 100.00 99.31 100.00 99.69 100.00 100.00 100.00 99.56 99.80 100.00 100.00 100.00 99.56 100.00 99.42 100.00 99.49 99.17 99.33 99.40 99.10 100.00 100.00 99.58 100.00 99.23 98.94 97.10 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.64 99.49 100.00 100.00 100.00 100.00 100.00 99.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.77 100.00 K alternative_donor LSm7 chr2L - chr2L_16742443_16742625;chr2L_16742443_16742662 chr2L_16742443_16742634 chr2L_16742326_16742442;chr2L_16742663_16742986 3.31 4.82 1.32 2.75 5.36 1.59 1.16 2.78 0.72 5.56 6.52 2.48 1.49 1.64 3.85 3.12 4.76 2.90 4.17 3.43 3.85 0.00 6.52 3.09 3.08 5.48 1.03 6.10 1.56 2.17 1.32 1.96 6.45 0.97 1.92 4.55 3.96 3.37 3.36 4.88 0.94 2.61 3.92 5.26 6.90 3.88 3.54 8.11 3.31 1.16 1.03 3.39 0.94 0.85 6.45 0.97 3.86 4.04 K intron_retention RI_chr3L_5801924_5803389,mad2 chr3L - chr3L_5805485_5805547 chr3L_5805484_5805485;chr3L_5805547_5805548 chr3L_5805232_5805484;chr3L_5805548_5805753 99.02 99.25 97.73 100.00 98.85 97.96 97.41 99.29 98.01 100.00 98.75 99.53 100.00 99.00 99.12 100.00 100.00 98.88 99.02 98.92 98.99 100.00 99.25 99.17 98.80 99.14 100.00 94.59 100.00 98.67 98.96 99.05 98.75 99.27 98.73 100.00 99.26 99.04 98.45 99.36 98.82 97.95 100.00 100.00 98.40 99.33 98.71 100.00 97.83 99.07 97.06 98.57 98.77 98.31 98.29 99.27 98.41 99.05 K jcn_only_AD CG11790 chr3R + chr3R_20874513_20874993 chr3R_20874631_20874993 chr3R_20874994_20875177 0.00 0.00 0.00 3.50 1.82 0.00 0.84 0.72 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 1.28 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.92 0.00 2.63 1.03 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.59 0.80 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 K alternative_acceptor RpL15 chr3LHet + chr3LHet_2397820_2398049;chr3LHet_2397820_2398127 chr3LHet_2397820_2398143 chr3LHet_2397802_2397819;chr3LHet_2398144_2398454 0.11 0.00 0.00 0.11 0.00 0.15 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.09 0.05 0.16 0.80 0.00 0.00 0.00 0.14 0.00 5.51 0.28 0.38 0.06 1.79 1.30 0.22 0.71 0.52 0.47 0.00 0.00 0.86 1.34 0.24 0.16 0.24 0.65 1.04 0.48 0.62 0.00 0.00 0.00 0.00 1.13 0.00 0.37 0.00 0.32 1.21 K intron_retention CG4825,RI_chr3L_20516382_20516451 chr3L - chr3L_20516385_20516451 chr3L_20516384_20516385;chr3L_20516451_20516452 chr3L_20516303_20516384;chr3L_20516452_20516551 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Eip63E,I_chr3L_3607167_3607501,noncoding_10431,I_chr3L_3607397_3607501 chr3L + chr3L_3600492_3607501 chr3L_3600491_3600492;chr3L_3607501_3607502 chr3L_3600312_3600491;chr3L_3607502_3607601 0.00 0.00 0.00 0.00 0.00 0.00 2.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32016,I_chr4_972691_972763,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_972704_972763 chr4_972703_972704;chr4_972763_972764 chr4_972619_972703;chr4_972764_972863 7.32 4.88 10.91 22.86 8.33 3.70 14.67 10.71 7.69 NA 5.26 8.14 8.93 6.52 9.30 12.79 8.33 7.32 10.34 7.48 5.00 0.00 9.23 5.17 0.00 25.00 9.84 15.79 0.00 0.00 5.88 2.70 15.38 9.52 5.88 0.00 0.00 7.32 0.00 9.43 10.00 6.59 13.79 8.51 0.00 2.56 6.25 4.35 7.61 4.76 7.69 5.00 2.94 0.00 10.17 0.00 6.90 9.30 K cassette Cnx99A,I_chr3R_25143234_25143790,I_chr3R_25144335_25145173,I_chr3R_25145243_25145309,I_chr3R_25145256_25145426 chr3R - chr3R_25143234_25143790 chr3R_25143234_25143557;chr3R_25143692_25143790 chr3R_25143558_25143691 chr3R_25143134_25143233;chr3R_25143791_25143853 99.76 99.44 99.07 99.68 99.69 99.72 99.80 99.86 99.62 99.57 100.00 99.85 100.00 100.00 100.00 99.83 99.72 99.73 99.78 99.87 100.00 99.77 100.00 100.00 99.60 99.73 99.51 99.30 99.21 99.74 99.37 99.69 99.84 100.00 99.30 99.18 99.74 100.00 99.75 99.71 99.56 99.88 100.00 100.00 99.76 99.61 99.71 100.00 99.86 99.76 99.74 100.00 100.00 99.58 99.80 100.00 100.00 99.80 K alternative_donor CG7224 chr2L + chr2L_7999176_7999248;chr2L_7999170_7999248;chr2L_7999174_7999248 chr2L_7999168_7999248 chr2L_7999249_7999714;chr2L_7998934_7999167 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.53 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG30077 chr2R + chr2R_10488909_10488966 chr2R_10488908_10488909;chr2R_10488966_10488967 chr2R_10488757_10488908;chr2R_10488967_10489534 0.00 0.00 4.17 0.00 0.00 4.35 0.00 6.67 3.33 10.00 0.00 4.44 0.00 NA 0.00 2.63 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 NA NA 7.41 0.00 0.00 0.00 19.35 5.00 0.00 3.45 0.00 NA 0.00 0.00 0.00 0.00 14.29 2.13 NA 0.00 0.00 8.70 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 K intron_retention ena chr2R + chr2R_15046858_15047287 chr2R_15046857_15046858;chr2R_15047287_15047288 chr2R_15046625_15046857;chr2R_15047288_15047295 0.00 0.00 9.09 8.33 0.00 0.00 7.14 0.00 4.23 0.00 0.00 3.77 0.00 6.67 2.86 11.76 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 9.52 3.85 8.33 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 1.45 4.11 0.00 0.00 3.12 5.56 2.74 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 6.67 0.00 0.00 NA 6.67 0.00 NA 2.94 K intron_retention CG5384 chr2L - chr2L_10313241_10313305 chr2L_10313240_10313241;chr2L_10313305_10313306 chr2L_10313084_10313240;chr2L_10313306_10313688 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG12301 chr3L + chr3L_15574395_15574453 chr3L_15574394_15574395;chr3L_15574453_15574454 chr3L_15573849_15574394;chr3L_15574454_15576510 8.01 5.56 0.00 10.81 6.67 4.17 10.81 12.20 13.21 8.33 6.67 11.54 0.00 0.00 8.57 6.06 10.00 13.64 0.00 10.00 10.00 15.62 10.81 6.45 NA NA 14.81 18.42 9.09 15.79 23.08 0.00 6.25 7.69 0.00 9.52 3.23 11.76 3.57 12.50 10.53 8.33 0.00 4.76 7.69 0.00 0.00 22.22 10.00 0.00 9.38 0.00 0.00 NA 3.33 4.35 5.71 11.63 K intron_retention CG4407,RI_chrX_12797000_12797409,I_chrX_12799068_12799634 chrX - chrX_12795885_12796348 chrX_12795884_12795885;chrX_12796348_12796349 chrX_12795389_12795884;chrX_12796349_12796999 0.00 0.00 0.00 0.00 0.00 2.56 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.02 0.00 0.00 0.00 1.43 0.00 0.00 0.00 3.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention slgA,I_chrX_21253735_21253820 chrX + chrX_21252091_21253206 chrX_21252090_21252091;chrX_21253206_21253207 chrX_21251909_21252090;chrX_21253207_21253271 0.00 5.56 NA NA NA NA 0.00 0.00 6.67 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 8.70 0.00 NA NA 6.67 NA 0.00 0.00 NA NA NA 0.00 NA NA 0.00 0.00 3.45 5.41 NA 3.70 NA 12.50 6.67 NA 0.00 0.00 0.00 NA 0.00 NA NA NA NA 0.00 NA NA K intron_retention cora,I_chr2R_15125277_15130573,I_chr2R_15125940_15130208,I_chr2R_15129291_15129988 chr2R + chr2R_15129901_15129994 chr2R_15129900_15129901;chr2R_15129994_15129995 chr2R_15129679_15129900;chr2R_15129995_15130088 58.82 58.82 52.63 73.91 72.73 58.82 71.43 52.94 52.17 NA 66.67 51.85 NA 60.00 58.82 81.82 71.43 56.25 NA 60.00 62.50 60.00 58.62 61.11 80.00 53.85 70.97 59.38 51.61 47.06 47.62 66.67 60.00 55.00 66.67 52.38 54.55 69.23 70.37 72.41 66.67 56.25 63.64 53.57 50.00 58.33 58.82 51.85 56.00 51.52 82.61 NA 50.00 60.00 55.56 65.00 65.22 31.82 K alternative_acceptor tacc,I_chr3R_570388_572101,I_chr3R_574271_574512 chr3R - chr3R_563503_565232;chr3R_563485_565232 chr3R_563461_565232 chr3R_565233_565290;chr3R_563195_563460 4.76 5.00 5.88 0.00 21.05 11.76 18.18 6.67 6.56 0.00 31.25 4.76 5.00 4.55 10.00 5.71 6.25 5.26 12.00 8.89 0.00 5.26 0.00 0.00 0.00 4.76 NA 0.00 0.00 0.00 7.14 0.00 0.00 14.29 NA 0.00 3.57 0.00 7.14 0.00 0.00 8.70 7.14 0.00 9.09 8.33 NA 6.67 6.98 0.00 3.85 0.00 0.00 NA 0.00 0.00 0.00 6.25 K alternative_acceptor CG3663,CG3683 chr2R + chr2R_20549521_20549598 chr2R_20549521_20549577 chr2R_20549454_20549520;chr2R_20549599_20549664 100.00 100.00 100.00 100.00 87.50 100.00 96.00 96.00 100.00 100.00 93.33 95.65 88.89 100.00 100.00 93.33 93.33 100.00 100.00 97.30 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 96.43 100.00 100.00 94.44 100.00 96.30 100.00 100.00 100.00 95.24 96.30 100.00 96.43 100.00 95.24 100.00 100.00 94.44 100.00 95.45 100.00 100.00 K jcn_only_AA gish chr3R + chr3R_12100604_12100684;chr3R_12100604_12100709 chr3R_12100604_12100675 chr3R_12100535_12100603;chr3R_12100710_12100891 96.30 NA NA NA NA NA NA NA 96.15 NA NA 95.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 95.24 NA NA 96.30 NA NA NA NA NA NA 100.00 NA NA NA NA NA 95.45 NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 K intron_retention CG6191 chr2R - chr2R_9469184_9469253 chr2R_9469183_9469184;chr2R_9469253_9469254 chr2R_9468999_9469183;chr2R_9469254_9469371 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.60 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.85 0.00 0.00 0.00 0.00 0.00 0.00 1.69 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Adk3 chr3R - chr3R_6714066_6714794 chr3R_6714066_6714787 chr3R_6713005_6714065;chr3R_6714795_6715357 65.69 NA NA 63.64 NA NA NA 60.00 69.23 NA NA 63.64 NA NA 36.36 73.33 NA NA 70.00 63.64 NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA 91.67 NA NA NA NA 85.71 NA 64.71 NA 60.00 NA 88.89 NA NA NA 57.14 77.78 K jcn_only_AA CG10462 chr2L - chr2L_19734281_19734469;chr2L_19734410_19734469 chr2L_19734413_19734469 chr2L_19734470_19734941;chr2L_19733639_19734280 71.32 73.91 74.65 67.77 72.09 78.95 63.39 71.32 73.26 66.67 77.78 73.68 64.79 71.67 68.75 64.34 77.46 65.15 65.75 73.44 67.44 67.74 75.86 76.81 80.43 71.01 72.73 60.00 74.19 75.93 67.83 68.42 59.00 71.79 78.12 71.05 76.19 76.47 69.12 75.25 70.45 72.66 60.29 77.03 56.00 64.38 63.89 70.21 72.41 73.33 64.86 70.21 65.00 69.09 69.23 72.58 72.83 76.61 K jcn_only_AD CG1718 chrX - chrX_21163958_21164368;chrX_21163958_21164182 chrX_21163958_21164390 chrX_21163741_21163957;chrX_21164391_21164557 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.55 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA 3.57 NA K jcn_only_AA mri,RI_chr3L_201061_201173,I_chr3L_212783_212843 chr3L + chr3L_201061_201173 chr3L_201061_201170 chr3L_200990_201060;chr3L_201174_201273 94.92 91.03 94.94 79.07 96.10 94.83 98.91 96.67 97.06 100.00 97.92 98.78 95.31 92.75 98.48 95.45 93.67 96.67 94.92 94.79 94.00 87.21 95.33 93.46 95.65 95.16 98.25 95.45 98.67 87.27 96.25 94.12 100.00 95.96 94.83 87.10 91.61 92.86 95.90 94.96 90.00 96.30 94.64 94.12 95.95 94.44 94.00 95.16 93.68 95.59 91.11 91.36 91.23 93.10 96.94 94.85 93.33 90.57 K jcn_only_AA CG9372 chr3L + chr3L_19599769_19599932 chr3L_19599769_19599913 chr3L_19599326_19599768;chr3L_19599933_19600081 1.64 1.56 0.00 2.56 0.86 1.12 0.00 1.64 2.69 2.00 0.88 0.56 0.54 1.52 0.84 0.28 0.65 0.00 1.53 1.64 1.86 0.88 3.92 0.61 2.60 3.07 4.69 NA 0.00 3.45 9.78 4.50 4.32 0.30 2.83 3.23 2.68 0.97 0.94 1.48 1.90 0.27 2.11 1.34 3.05 2.28 0.00 2.14 0.21 3.45 2.30 2.11 0.00 3.11 1.83 1.68 1.32 3.66 K jcn_only_AA R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8088454_8089184;chr2L_8088454_8089057;chr2L_8088454_8089356;chr2L_8088454_8089490;chr2L_8088454_8088664 chr2L_8088454_8088609 chr2L_8088448_8088453 0.00 NA 0.00 0.00 NA NA 1.89 0.00 1.56 NA NA 1.30 0.00 2.78 0.00 2.70 NA 0.00 0.00 2.06 0.00 NA 3.33 0.00 0.00 0.00 NA NA NA NA 0.00 NA 4.35 1.32 0.00 0.00 NA NA NA 4.65 0.00 0.00 0.00 3.33 NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA 3.70 0.00 NA NA K alternative_acceptor I_chr2R_4783150_4783708,Ggamma1,noncoding_5300 chr2R + chr2R_4788937_4789832 chr2R_4788937_4789641 chr2R_4788908_4788936;chr2R_4789833_4790635 97.96 98.36 97.18 98.20 97.78 98.65 97.94 99.32 96.69 100.00 98.77 98.52 98.89 98.80 91.40 99.17 98.00 98.00 97.14 96.59 98.51 98.28 100.00 95.65 97.14 95.00 100.00 94.12 97.96 96.97 97.65 96.00 98.33 97.44 100.00 100.00 97.73 97.37 98.25 98.86 97.96 96.60 98.11 100.00 98.57 98.02 95.24 100.00 96.35 97.37 100.00 96.97 95.65 97.78 94.19 97.96 93.18 97.22 K alternative_donor Klc,I_chr3L_12741779_12743062,I_chr3L_12741783_12742943,I_chr3L_12741838_12743062 chr3L - chr3L_12741783_12743132 chr3L_12741783_12743062 chr3L_12741738_12741782;chr3L_12743133_12743162 97.44 97.62 98.21 95.79 97.56 91.43 96.30 95.70 98.03 100.00 98.11 100.00 96.55 97.92 97.96 96.59 94.34 97.56 100.00 98.13 98.04 100.00 96.30 96.88 96.30 97.50 96.77 100.00 96.67 90.32 98.04 96.15 94.12 97.73 96.43 97.06 97.44 100.00 97.14 96.30 94.74 95.83 100.00 96.30 100.00 98.11 96.15 95.83 98.80 97.44 93.88 97.62 100.00 95.65 98.31 100.00 98.04 97.14 N jcn_only_AA CG42394,noncoding_15936,E_chr3R_6675742_6676058 chr3R + chr3R_6677211_6677344;chr3R_6677211_6677270 chr3R_6677211_6677262 chr3R_6677007_6677210;chr3R_6677345_6677430 18.03 23.08 15.91 19.81 0.00 17.86 18.03 19.71 24.19 0.00 22.39 13.90 29.46 17.81 26.73 22.62 24.77 21.21 29.41 15.00 0.00 0.00 22.22 14.02 0.00 25.97 16.49 0.00 0.00 0.00 17.42 20.00 14.52 18.03 18.60 0.00 18.52 29.55 0.00 13.04 16.19 17.95 18.60 21.93 17.70 22.12 15.65 24.78 18.64 23.21 18.02 22.73 16.18 12.26 26.61 20.00 18.88 19.11 K intron_retention mRpL36,Uba2 chr3L - chr3L_8118139_8118192 chr3L_8118138_8118139;chr3L_8118192_8118193 chr3L_8117681_8118138;chr3L_8118193_8118198 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 3.23 NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG4699 chr3R + chr3R_11624190_11624445 chr3R_11624190_11624442 chr3R_11623809_11624189;chr3R_11624446_11624758 71.61 67.65 NA 70.37 NA NA NA NA 86.67 58.97 NA 75.68 NA NA NA NA NA NA NA 84.00 NA 75.68 75.00 66.67 69.70 NA 70.49 68.52 70.27 92.86 NA 72.73 78.26 NA 76.92 66.67 60.87 60.00 68.00 73.85 60.87 75.76 NA 85.19 63.64 61.11 56.41 86.67 40.62 69.81 76.60 73.08 78.38 84.38 NA 86.11 66.67 80.00 K intron_retention lva,CG6428 chrX - chrX_3858531_3858599 chrX_3858530_3858531;chrX_3858599_3858600 chrX_3858450_3858530;chrX_3858600_3858671 0.00 0.00 0.00 0.00 NA 0.00 10.26 7.14 4.76 0.00 9.09 0.00 0.00 4.00 0.00 0.00 NA 10.00 0.00 3.39 0.00 0.00 4.65 0.00 0.00 0.00 9.76 14.29 22.22 3.33 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 K alternative_donor CG3305,CREI_chr2L_21573959_21574786,E_chr2L_21574285_21574462 chr2L + chr2L_21573425_21574786 chr2L_21573562_21574786 chr2L_21574787_21574886;chr2L_21573392_21573424 100.00 99.61 99.24 99.83 99.52 100.00 99.75 99.69 100.00 100.00 100.00 99.66 100.00 99.49 100.00 99.87 100.00 99.14 99.76 99.07 100.00 97.97 100.00 100.00 100.00 99.60 100.00 100.00 98.96 100.00 99.69 100.00 98.53 99.83 100.00 99.43 100.00 100.00 100.00 100.00 100.00 99.82 100.00 100.00 98.81 99.47 100.00 100.00 99.84 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.62 100.00 K multi_cassette spz chr3R - chr3R_22892388_22894865 chr3R_22892388_22892843;chr3R_22892922_22893079;chr3R_22893218_22894865 chr3R_22892844_22892921;chr3R_22893080_22893217 chr3R_22892330_22892387;chr3R_22894866_22895053 32.12 30.16 49.00 13.24 29.41 29.89 20.24 28.26 31.33 25.64 57.69 32.12 52.44 33.33 33.94 44.16 36.84 37.65 38.71 41.53 45.90 24.36 24.34 25.49 32.95 39.29 31.15 21.57 17.86 32.50 34.04 35.35 28.46 35.29 45.00 17.50 26.77 27.84 28.15 44.87 40.80 31.05 36.56 36.63 16.96 34.00 29.31 34.84 34.65 32.56 36.07 30.77 13.51 31.07 37.29 27.83 20.39 27.09 K intron_retention CG33981,fab1 chr2R - chr2R_13665658_13665717 chr2R_13665657_13665658;chr2R_13665717_13665718 chr2R_13663663_13665657;chr2R_13665718_13665988 0.00 0.00 0.00 4.88 0.00 NA 0.00 2.70 0.00 NA 0.00 0.00 0.00 5.88 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.85 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG7824 chr3R - chr3R_25684373_25684496 chr3R_25684441_25684496 chr3R_25684497_25684659;chr3R_25683370_25684372 95.41 96.97 91.89 84.62 100.00 90.62 98.11 100.00 97.44 92.59 91.30 95.00 86.67 91.89 94.74 100.00 94.12 95.45 100.00 91.84 96.88 96.72 89.29 100.00 100.00 100.00 NA 100.00 96.97 95.00 95.00 97.22 97.92 98.70 100.00 100.00 86.96 97.14 95.83 94.59 97.56 95.38 94.59 97.06 92.11 93.10 95.24 93.62 98.77 100.00 93.33 100.00 89.47 88.24 92.50 92.86 93.10 98.73 K intron_retention Tango2,RI_chrX_13543535_13546911,I_chrX_13544101_13544542 chrX + chrX_13511970_13512305 chrX_13511969_13511970;chrX_13512305_13512306 chrX_13511850_13511969;chrX_13512306_13512435 53.59 41.67 NA 45.45 NA 35.71 53.85 60.00 36.84 NA NA 66.67 NA NA 50.00 NA NA NA NA 54.17 NA 94.12 56.25 42.11 53.85 90.00 36.36 60.00 60.00 50.00 75.00 53.33 55.00 41.67 35.29 NA 40.00 46.67 60.87 48.15 73.33 61.11 NA 58.82 63.16 55.00 42.86 50.00 56.25 41.67 25.00 NA NA 45.45 NA 38.89 NA 62.50 K alternative_donor shi,RI_chrX_15786633_15786860,RE_chrX_15793108_15795563 chrX + chrX_15786474_15786860;chrX_15786603_15786860;chrX_15786285_15786860;chrX_15786615_15786860;chrX_15786200_15786860 chrX_15786394_15786860 chrX_15786861_15786960;chrX_15786192_15786199 0.00 14.29 0.00 6.90 0.00 0.00 2.86 0.00 0.00 0.00 0.00 9.38 0.00 0.00 0.00 7.50 0.00 0.00 6.45 7.69 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 16.67 0.00 0.00 0.00 5.26 1.92 0.00 0.00 0.00 0.00 0.00 6.90 0.00 7.50 5.56 10.53 0.00 16.67 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 20.00 K cassette Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8455204_8456400 chr3L_8455204_8456103;chr3L_8456338_8456400 chr3L_8456104_8456337 chr3L_8455194_8455203;chr3L_8456401_8460667 91.67 83.33 100.00 91.67 72.73 87.50 100.00 100.00 94.44 NA 85.71 80.95 88.89 88.89 88.89 92.86 90.91 83.33 88.89 100.00 85.71 83.33 88.24 90.00 NA 88.89 100.00 NA 87.50 100.00 88.89 NA 100.00 93.33 100.00 100.00 80.00 100.00 100.00 100.00 NA 94.12 100.00 100.00 NA 100.00 NA 100.00 84.21 NA 90.00 100.00 83.33 80.00 93.75 NA NA 100.00 K jcn_only_AD Zn72D,RF_chr3L_16100887_16102721,I_chr3L_16105199_16105253 chr3L - chr3L_16105199_16105299;chr3L_16105199_16105253;chr3L_16105199_16105431 chr3L_16105199_16105318 chr3L_16105099_16105198;chr3L_16105432_16105487 0.72 0.00 0.00 1.32 0.00 0.00 2.74 1.15 0.72 0.00 0.00 0.00 2.22 3.17 2.27 0.00 0.00 0.00 0.00 4.05 7.41 4.76 2.63 2.44 11.11 4.55 0.00 4.17 3.70 3.23 4.62 5.00 0.00 0.00 NA NA 5.77 0.00 2.38 5.77 0.00 0.00 0.00 0.00 0.00 2.78 NA 0.00 3.23 3.33 0.00 0.00 NA NA 0.00 NA 0.00 2.38 K jcn_only_AA CG4829,I_chrX_16717240_16717547 chrX + chrX_16717240_16717547;chrX_16717240_16717889 chrX_16717240_16717619 chrX_16717140_16717239;chrX_16717890_16718151 96.24 95.84 97.15 99.05 70.09 66.01 95.99 96.95 96.80 88.86 96.62 95.12 94.04 96.70 94.02 97.84 97.03 95.96 96.69 97.26 96.07 96.24 95.97 95.75 94.94 93.08 94.05 88.28 96.47 97.82 92.39 98.25 96.01 98.25 94.46 98.92 96.86 97.00 97.34 94.06 94.55 97.52 96.00 97.83 95.03 95.97 95.81 96.85 96.77 94.25 94.91 95.38 98.25 97.29 97.21 96.50 98.04 98.55 K multi_cassette Sema-1a,R_chr2L_8564297_8610230,E_chr2L_8622170_8631026 chr2L + chr2L_8663252_8666035 chr2L_8663252_8664157;chr2L_8664221_8665445;chr2L_8665519_8666035 chr2L_8664158_8664220;chr2L_8665446_8665518 chr2L_8663198_8663251;chr2L_8666036_8666047 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA 100.00 NA 96.30 100.00 100.00 87.50 NA 100.00 100.00 90.48 100.00 NA 100.00 100.00 100.00 100.00 92.31 100.00 85.71 100.00 100.00 100.00 100.00 NA 85.71 100.00 100.00 NA 100.00 NA NA 100.00 100.00 NA NA NA 100.00 100.00 100.00 N jcn_only_AD CG32066 chr3L - chr3L_10652769_10654020 chr3L_10652769_10653882 chr3L_10652465_10652768;chr3L_10654021_10654125 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 61.90 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K intron_retention CG11699,CG11696,CG11695 chrX + chrX_11465142_11465201 chrX_11465141_11465142;chrX_11465201_11465202 chrX_11464900_11465141;chrX_11465202_11465510 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 1.00 3.49 0.00 0.00 0.00 0.00 0.60 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Ard1,noncoding_11800 chr3L + chr3L_9965498_9965980;chr3L_9965498_9966021 chr3L_9965498_9965994 chr3L_9965419_9965497;chr3L_9966022_9966054 2.50 NA NA 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 K cassette Rgk1,I_chr2R_15202259_15205046,I_chr2R_15202844_15203955,F_chr2R_15206006_15206189 chr2R - chr2R_15202259_15205046 chr2R_15202259_15202751;chr2R_15202844_15205046 chr2R_15202752_15202843 chr2R_15202245_15202258;chr2R_15205047_15205141 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 93.75 NA 83.33 100.00 100.00 90.91 92.86 100.00 100.00 100.00 100.00 90.00 100.00 100.00 83.33 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention sec23,I_chr3R_1474873_1475080,I_chr3R_1474899_1475080,I_chr3R_1474960_1475051,I_chr3R_1477727_1478102 chr3R + chr3R_1474899_1475093 chr3R_1474898_1474899;chr3R_1475093_1475094 chr3R_1474877_1474898;chr3R_1475094_1475151 93.33 82.35 97.37 98.46 97.06 93.10 89.71 94.12 93.40 96.00 96.77 91.14 90.00 97.50 98.11 85.71 95.74 90.62 91.84 87.69 93.75 73.81 90.00 89.19 96.55 92.50 97.67 88.37 97.30 63.64 97.92 87.50 67.35 94.52 96.00 95.83 89.19 93.33 84.85 82.69 95.83 91.46 88.24 100.00 95.24 100.00 96.88 95.65 91.46 87.76 95.00 93.10 93.33 89.47 93.62 100.00 91.07 93.75 K intron_retention CaMKII,I_chr4_1059085_1060638,I_chr4_1059085_1065781,RI_chr4_1061742_1064093,RI_chr4_1061742_1065781,I_chr4_1061989_1065781,RI_chr4_1063745_1065781,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1058367_1058984 chr4_1058366_1058367;chr4_1058984_1058985 chr4_1058272_1058366;chr4_1058985_1059060 0.00 0.00 0.00 1.20 0.00 0.00 2.11 0.00 1.19 NA 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG5608 chr3R - chr3R_8288525_8288577 chr3R_8288524_8288525;chr3R_8288577_8288578 chr3R_8288136_8288524;chr3R_8288578_8288820 10.53 8.00 22.22 8.00 16.67 7.69 10.00 6.25 11.11 NA NA 12.00 NA NA 11.11 15.62 11.76 13.64 22.22 14.29 0.00 0.00 5.71 3.85 14.29 5.56 5.26 NA NA NA 10.53 7.14 NA 6.06 0.00 0.00 NA 15.00 11.54 11.54 NA 11.76 10.53 10.53 0.00 19.05 3.23 NA 18.52 14.81 12.50 11.11 NA 6.06 7.69 5.71 6.25 NA K jcn_only_AA Cp190,I_chr3R_11100788_11100846,F_chr3R_11104164_11104239 chr3R - chr3R_11100321_11100846;chr3R_11100788_11100846 chr3R_11100334_11100846 chr3R_11100847_11100931;chr3R_11099837_11100320 98.31 96.30 96.91 100.00 100.00 98.48 94.39 99.23 98.92 97.33 96.59 96.82 98.84 98.70 100.00 99.20 100.00 98.97 96.59 99.60 100.00 95.51 100.00 100.00 98.65 100.00 98.44 98.41 100.00 97.94 97.33 96.88 97.84 96.23 97.98 99.11 96.59 96.08 97.01 97.97 95.52 99.30 94.12 95.83 100.00 100.00 97.06 98.31 96.90 100.00 97.39 100.00 98.65 100.00 97.89 95.24 96.23 97.40 K alternative_acceptor CG1407,RI_chr2R_5918919_5919093,I_chr2R_5918925_5919213,RI_chr2R_5918952_5919084,RI_chr2R_5918952_5919093 chr2R - chr2R_5918925_5919084 chr2R_5918952_5919084 chr2R_5919085_5919090;chr2R_5918852_5918924 77.14 78.26 69.23 71.15 77.42 77.42 66.67 77.14 81.25 81.25 76.00 87.23 96.55 78.26 85.29 75.47 72.09 73.33 68.42 66.25 78.12 83.87 73.53 77.78 69.57 82.05 66.67 66.67 73.68 73.33 70.73 100.00 80.00 70.37 75.00 94.12 77.42 80.00 67.50 87.10 75.00 78.26 76.92 92.31 88.24 76.19 78.26 80.00 74.63 84.21 67.86 76.19 64.29 83.33 76.09 85.00 73.33 85.71 K jcn_only_AA ird5,I_chr3R_11874883_11874942,CG10185 chr3R - chr3R_11874534_11874942 chr3R_11874883_11874942 chr3R_11874943_11875042;chr3R_11873964_11874533 7.14 5.00 9.26 16.67 8.00 2.38 11.32 3.70 1.61 0.00 12.50 14.71 15.38 6.90 4.62 4.44 0.00 11.63 15.62 6.85 2.63 6.25 0.00 6.38 6.06 8.70 2.63 NA 14.29 10.34 6.25 17.86 7.14 1.39 11.76 3.33 0.00 2.44 2.27 4.23 12.90 5.26 2.94 0.00 22.86 9.52 9.68 8.96 5.88 7.14 9.38 10.00 14.29 10.00 8.51 11.63 10.71 18.18 K intron_retention Lis-1 chr2R + chr2R_12066458_12069485 chr2R_12066457_12066458;chr2R_12069485_12069486 chr2R_12066383_12066457;chr2R_12069486_12069595 0.00 0.00 0.00 1.49 3.45 0.00 0.00 0.00 2.25 0.00 0.00 1.41 6.25 0.00 0.00 0.95 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.57 0.00 0.00 0.00 5.00 NA 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD CG17255,I_chrX_10366177_10366615,RI_chrX_10366177_10367270 chrX - chrX_10366177_10367201;chrX_10366177_10367458;chrX_10366177_10367270;chrX_10366177_10368085;chrX_10366177_10366615 chrX_10366177_10367360 chrX_10366077_10366176;chrX_10368086_10368118 8.47 8.33 10.26 11.29 12.94 6.19 10.88 2.11 11.29 2.20 3.57 7.92 11.61 4.80 10.26 11.56 14.29 11.70 9.80 6.57 14.61 5.62 11.11 7.19 8.45 10.95 8.47 2.15 2.82 6.92 12.31 7.61 5.91 9.47 8.40 3.06 13.14 4.49 12.00 5.13 5.21 9.50 7.00 12.40 0.00 4.42 9.26 3.79 9.81 7.04 10.42 11.27 11.48 12.50 8.98 10.00 5.36 5.56 K intron_retention I_chr2R_19265701_19270570,CG30415,CG3530,CG3520 chr2R - chr2R_19273569_19273639 chr2R_19273568_19273569;chr2R_19273639_19273640 chr2R_19273117_19273568;chr2R_19273640_19273840 0.29 0.60 0.21 0.28 0.46 0.00 0.91 0.00 0.30 0.00 0.00 0.45 0.00 0.00 0.85 0.00 1.09 0.38 1.14 0.21 0.77 0.00 0.58 0.22 0.00 0.21 0.40 1.79 0.59 0.00 0.66 0.00 1.17 0.00 1.00 0.55 0.00 0.29 0.24 0.22 0.00 0.60 0.29 0.00 0.58 0.61 0.56 0.41 0.42 0.36 0.70 0.27 0.00 0.14 0.20 0.49 0.37 0.00 K alternative_donor scu,RhoGAP16F chrX + chrX_17987656_17989117;chrX_17988131_17989117;chrX_17988127_17989117 chrX_17987638_17989117 chrX_17989118_17990486;chrX_17987544_17987637 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 3.45 0.00 0.00 4.76 0.00 6.67 7.14 0.00 15.38 0.00 0.00 3.57 0.00 0.00 9.09 8.33 10.00 0.00 0.00 0.00 11.11 0.00 1.43 0.00 0.00 0.00 0.00 0.00 10.00 9.09 0.00 0.00 0.00 4.00 0.00 9.09 0.00 0.00 0.00 0.00 4.35 9.09 6.67 12.50 0.00 14.29 7.14 9.09 0.00 7.14 K intron_retention CG17180,RI_chr3L_548068_552227 chr3L + chr3L_541429_541484 chr3L_541428_541429;chr3L_541484_541485 chr3L_541002_541428;chr3L_541485_541959 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 9.09 14.29 0.00 4.65 NA 5.00 2.70 7.41 NA 0.00 0.00 6.52 0.00 14.63 8.70 0.00 5.56 0.00 15.38 NA 4.76 0.00 0.00 0.00 3.57 0.00 NA 5.26 0.00 0.00 4.08 4.26 0.00 5.13 NA 8.00 0.00 0.00 0.00 6.90 5.71 7.14 9.09 0.00 0.00 0.00 4.17 0.00 0.00 2.56 K jcn_only_AA Rga,I_chr3R_1436346_1437897,I_chr3R_1437726_1437791,Spec2 chr3R - chr3R_1436346_1437791 chr3R_1437726_1437791 chr3R_1437792_1437801;chr3R_1436246_1436345 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 1.60 0.00 1.82 0.00 0.86 1.39 0.56 0.00 0.00 0.00 0.00 0.00 1.59 1.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 1.10 0.00 0.00 0.00 0.00 1.45 0.00 0.00 K alternative_donor Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2362674;chr2L_2361586_2362869 chr2L_2361586_2362590 chr2L_2361486_2361585;chr2L_2362870_2362919 0.00 0.00 20.00 27.27 16.67 0.00 0.00 21.43 14.29 NA NA 0.00 0.00 33.33 0.00 16.67 0.00 50.00 0.00 0.00 0.00 0.00 11.11 0.00 NA 0.00 16.67 0.00 NA 0.00 0.00 NA 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 NA 6.67 16.67 0.00 NA 0.00 0.00 NA 7.69 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10277,I_chr3R_2211939_2212057 chr3R + chr3R_2208691_2208770 chr3R_2208690_2208691;chr3R_2208770_2208771 chr3R_2208678_2208690;chr3R_2208771_2208982 98.95 100.00 98.21 100.00 97.73 100.00 98.48 98.65 99.02 97.14 100.00 98.70 100.00 98.08 98.25 100.00 93.88 97.87 100.00 99.04 97.56 98.10 98.90 100.00 100.00 100.00 100.00 100.00 100.00 98.68 97.10 97.78 98.46 100.00 96.43 100.00 98.68 98.18 100.00 100.00 100.00 98.95 97.73 99.10 93.48 98.86 100.00 99.07 98.94 100.00 98.80 100.00 97.44 100.00 98.18 100.00 100.00 98.11 N jcn_only_AA Hrb98DE,RI_chr3R_24429041_24431183,RI_chr3R_24430202_24430258 chr3R + chr3R_24429421_24429573;chr3R_24429421_24429782 chr3R_24429421_24431183 chr3R_24429330_24429420;chr3R_24431184_24431283 1.79 1.44 1.38 1.16 2.28 2.34 1.39 1.49 2.08 0.50 0.00 5.52 3.53 2.52 1.63 1.31 0.91 4.15 0.45 1.44 0.00 0.14 2.94 2.68 0.79 0.55 1.23 0.56 1.54 2.89 3.39 2.43 0.96 1.32 3.28 1.74 2.39 1.83 2.77 3.24 0.35 1.79 0.32 2.20 4.86 2.14 3.76 1.12 1.98 1.28 2.04 1.27 7.87 2.46 1.27 2.16 5.27 3.95 K jcn_only_AD ari-1,I_chrX_18026911_18026975 chrX - chrX_18026911_18026992 chrX_18026911_18026975 chrX_18026811_18026910;chrX_18026993_18027075 1.87 3.85 1.67 0.00 3.17 6.82 6.12 1.09 5.92 0.00 2.33 2.20 5.71 0.00 1.82 0.00 2.04 2.17 1.85 2.13 5.26 1.30 1.61 0.00 4.00 5.36 0.00 6.45 10.53 0.00 2.94 NA 0.00 2.70 0.00 0.00 1.69 5.13 1.89 3.90 2.94 0.91 2.13 0.00 0.00 5.13 0.00 3.57 4.17 0.00 0.00 2.56 0.00 3.23 1.41 0.00 0.00 1.82 K intron_retention Atpalpha,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16792925_16798894 chr3R_16792924_16792925;chr3R_16798894_16798895 chr3R_16792830_16792924;chr3R_16798895_16798994 1.74 1.01 2.14 2.22 1.81 1.85 2.58 2.66 1.24 0.46 2.83 2.14 4.01 2.56 1.72 1.29 1.84 2.92 1.79 1.69 1.97 1.63 1.21 1.41 3.06 3.37 2.27 10.00 1.22 2.03 1.88 1.43 1.43 2.35 1.63 1.57 0.87 0.76 0.89 3.61 0.52 1.67 2.50 1.26 0.93 1.49 1.74 4.09 1.85 0.98 0.88 0.92 2.05 0.00 2.52 1.21 0.55 2.94 K intron_retention th,I_chr3L_16033166_16034018,I_chr3L_16033166_16035885,I_chr3L_16036172_16039584,I_chr3L_16036172_16043557,RI_chr3L_16038514_16039584,RI_chr3L_16038543_16039584,RI_chr3L_16039065_16039584 chr3L - chr3L_16033166_16035506 chr3L_16033165_16033166;chr3L_16035506_16035507 chr3L_16033066_16033165;chr3L_16035507_16035753 87.50 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 85.71 NA NA NA 42.86 NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA 90.91 NA NA NA NA NA NA NA NA 77.78 K jcn_only_AD CG3609,I_chr2L_2373706_2374488,RI_chr2L_2373723_2374295 chr2L - chr2L_2373723_2374488 chr2L_2373723_2373935 chr2L_2373623_2373722;chr2L_2374489_2374588 6.56 6.98 3.57 10.67 6.56 4.05 5.13 3.51 2.96 39.13 3.33 4.46 9.68 1.72 2.97 7.89 2.27 2.33 8.11 2.58 12.50 NA NA NA NA 2.04 NA NA 47.62 NA 3.53 25.00 17.14 4.88 NA NA NA NA NA 25.00 43.48 1.24 3.12 10.00 26.53 44.44 NA 23.81 4.41 55.56 NA NA 10.00 NA 4.49 NA NA 28.26 K intron_retention spz chr3R - chr3R_22892922_22893079 chr3R_22892921_22892922;chr3R_22893079_22893080 chr3R_22892844_22892921;chr3R_22893080_22893093 5.36 6.41 3.19 15.19 4.62 5.77 34.62 6.56 5.30 10.81 8.96 9.90 9.28 6.35 4.11 2.99 5.26 5.48 5.26 3.73 5.26 6.82 8.22 6.17 8.47 10.20 5.81 0.00 5.71 5.36 6.35 3.90 2.35 3.48 5.56 19.05 4.11 0.00 7.32 2.52 6.42 5.04 0.00 8.22 0.00 4.46 4.41 4.39 8.57 4.71 5.43 9.80 0.00 3.33 4.71 6.15 3.61 3.17 K jcn_only_AD RI_chr3R_7061265_7061322,CG31441,CG31388 chr3R + chr3R_7062215_7062271;chr3R_7062207_7062271 chr3R_7062211_7062271 chr3R_7062272_7063062;chr3R_7062165_7062206 79.70 NA NA 84.38 NA NA 77.14 100.00 75.00 NA NA 80.00 NA NA NA 85.71 NA NA NA 87.88 NA NA NA NA NA NA NA NA NA NA 50.00 NA NA 84.38 NA NA NA NA NA NA NA 84.85 NA NA NA NA 70.00 NA 79.41 NA NA NA NA NA 71.43 NA 73.08 NA K intron_retention ced-6,I_chr2R_5322831_5322898,I_chr2R_5324717_5324924,I_chr2R_5328640_5328696 chr2R - chr2R_5322840_5322898 chr2R_5322839_5322840;chr2R_5322898_5322899 chr2R_5322765_5322839;chr2R_5322899_5322998 0.00 0.00 0.29 0.39 1.06 0.00 0.45 0.41 1.02 0.00 0.56 0.71 0.40 0.00 0.00 0.66 1.06 0.00 0.54 0.00 0.78 0.00 0.74 0.26 0.00 0.00 1.61 2.00 0.61 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.53 0.00 1.16 0.27 0.45 0.00 0.00 0.00 0.45 0.00 0.00 0.00 K jcn_only_AD Spred,I_chr2R_10655876_10656041,I_chr2R_10655876_10656193,I_chr2R_10655876_10656868 chr2R - chr2R_10655876_10656848;chr2R_10655876_10656878;chr2R_10655876_10656782;chr2R_10655876_10656871 chr2R_10655876_10656526 chr2R_10655776_10655875;chr2R_10656879_10656886 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 1.39 0.00 NA 0.00 5.00 NA 0.00 4.17 0.00 NA 0.00 0.00 NA NA 3.17 5.41 0.00 NA NA NA 0.00 NA 1.67 3.85 2.04 NA 0.00 0.00 0.00 1.96 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 NA K intron_retention Ucrh,CREFI_chr3LHet_606442_607073 chr3LHet + chr3LHet_606275_606333 chr3LHet_606274_606275;chr3LHet_606333_606334 chr3LHet_606198_606274;chr3LHet_606334_606441 26.32 NA NA 26.32 NA NA NA 38.89 25.00 NA NA NA NA NA NA 36.84 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA K intron_retention Lnk,RI_chr3R_21714780_21715376 chr3R + chr3R_21714614_21715376 chr3R_21714613_21714614;chr3R_21715376_21715377 chr3R_21714271_21714613;chr3R_21715377_21715476 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 5.71 0.00 NA 0.00 K alternative_donor wun2,I_chr2R_5304606_5304660 chr2R + chr2R_5304299_5304362 chr2R_5304302_5304362 chr2R_5304363_5304430;chr2R_5304233_5304298 100.00 100.00 97.62 100.00 98.59 100.00 100.00 100.00 99.29 100.00 97.92 100.00 100.00 100.00 100.00 98.57 100.00 100.00 98.04 99.03 100.00 100.00 99.00 100.00 100.00 100.00 97.80 98.53 100.00 98.77 100.00 100.00 98.31 98.59 100.00 97.67 100.00 100.00 99.02 98.41 100.00 99.14 100.00 100.00 98.44 100.00 100.00 100.00 100.00 98.39 99.15 100.00 100.00 100.00 100.00 98.99 100.00 100.00 K intron_retention CG34056,CG34057 chr3L + chr3L_896117_896181 chr3L_896116_896117;chr3L_896181_896182 chr3L_895951_896116;chr3L_896182_896218 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 90.00 100.00 100.00 100.00 100.00 100.00 K intron_retention dom,I_chr2R_17217595_17218598,I_chr2R_17228865_17228924 chr2R + chr2R_17228126_17228188 chr2R_17228125_17228126;chr2R_17228188_17228189 chr2R_17225030_17228125;chr2R_17228189_17228581 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 K intron_retention T-cp1 chr3R - chr3R_18316535_18316589 chr3R_18316534_18316535;chr3R_18316589_18316590 chr3R_18315644_18316534;chr3R_18316590_18316743 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.71 2.99 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ssp4,I_chr2R_13409412_13410357,RI_chr2R_13409412_13411004,I_chr2R_13409412_13411328,I_chr2R_13409412_13411588,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13408434_13409210 chr2R_13408433_13408434;chr2R_13409210_13409211 chr2R_13408151_13408433;chr2R_13409211_13409316 22.73 22.73 42.86 16.28 15.00 34.78 62.50 28.26 21.62 NA NA 20.00 50.00 24.24 28.00 23.81 19.51 26.32 38.71 22.45 22.22 40.00 19.44 24.14 NA 9.09 12.50 41.67 7.14 17.24 16.67 27.27 16.67 21.74 30.00 9.09 21.88 20.00 13.04 36.36 50.00 26.32 40.91 13.89 NA 27.27 20.00 42.86 31.25 11.11 25.00 26.32 22.73 25.00 21.88 16.67 0.00 28.57 K jcn_only_AD Hcs,I_chr3R_1303481_1304607 chr3R + chr3R_1302041_1302262 chr3R_1302185_1302262 chr3R_1302263_1303269;chr3R_1302036_1302040 88.50 NA NA NA NA NA NA NA 92.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 85.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG1354,I_chrX_9672972_9673084 chrX + chrX_9672843_9672900 chrX_9672842_9672843;chrX_9672900_9672901 chrX_9672779_9672842;chrX_9672901_9672946 0.00 0.00 0.00 0.00 3.85 0.00 0.00 4.17 2.60 NA 0.00 3.08 0.00 0.00 2.38 4.48 0.00 0.00 0.00 1.43 0.00 NA 4.76 0.00 5.88 10.53 19.35 18.75 35.71 NA 0.00 NA NA 0.00 NA NA 3.77 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 6.67 0.00 NA NA 4.55 NA 0.00 NA K jcn_only_AA CG14341,I_chr2L_1166923_1166992 chr2L + chr2L_1166923_1166992 chr2L_1166923_1166982 chr2L_1166823_1166922;chr2L_1166993_1167092 100.00 98.80 98.08 100.00 100.00 100.00 97.53 98.90 98.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.53 94.29 100.00 100.00 100.00 98.51 100.00 98.11 100.00 100.00 100.00 100.00 100.00 98.81 100.00 100.00 98.10 100.00 99.15 100.00 100.00 100.00 100.00 100.00 100.00 99.02 100.00 100.00 100.00 97.62 98.77 96.61 97.17 100.00 99.05 K intron_retention cryptocephal,noncoding_4181,I_chr2L_21311307_21311752,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21311033_21311752 chr2L_21311032_21311033;chr2L_21311752_21311753 chr2L_21310948_21311032;chr2L_21311753_21311852 3.23 2.86 3.80 1.11 2.41 3.08 2.02 1.55 3.36 2.56 1.58 2.35 2.67 3.07 3.15 8.44 2.32 5.29 2.29 2.30 3.14 5.19 4.44 5.75 2.66 1.19 8.93 15.27 12.06 5.32 2.26 7.05 2.56 1.50 4.66 5.80 5.92 3.57 7.21 3.57 1.71 1.96 2.68 3.23 5.00 4.28 8.37 3.42 2.29 4.65 5.43 2.50 4.29 5.71 1.30 5.46 4.98 1.80 K jcn_only_AD CG4880 chrX + chrX_16781381_16781655 chrX_16781444_16781655 chrX_16781656_16782762;chrX_16780837_16781380 100.00 98.68 100.00 97.62 100.00 98.33 98.67 98.80 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.96 97.22 100.00 100.00 96.10 96.30 95.83 100.00 100.00 95.45 100.00 100.00 100.00 98.31 95.24 98.78 100.00 98.77 97.73 100.00 100.00 100.00 100.00 99.01 98.46 100.00 100.00 100.00 98.46 100.00 100.00 98.53 98.33 98.08 100.00 100.00 K multi_cassette CG17471,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1216718_1217333 chr4_1216718_1216790;chr4_1216889_1216945;chr4_1217104_1217333 chr4_1216791_1216888;chr4_1216946_1217103 chr4_1216618_1216717;chr4_1217334_1217351 87.50 100.00 85.71 76.47 100.00 83.33 94.44 90.48 86.21 NA 75.00 68.18 100.00 92.86 85.71 87.50 100.00 83.33 91.67 100.00 100.00 NA 85.71 83.33 NA NA 85.71 100.00 NA 100.00 90.91 NA NA 100.00 88.89 NA NA NA 100.00 88.89 83.33 100.00 90.91 80.00 NA 88.89 75.00 83.33 78.95 85.71 100.00 83.33 NA 75.00 88.89 85.71 83.33 80.00 K intron_retention RI_chrX_1945968_1947849,CG4313 chrX + chrX_1948474_1948536 chrX_1948473_1948474;chrX_1948536_1948537 chrX_1947869_1948473;chrX_1948537_1949479 0.00 NA NA 20.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 9.52 0.00 NA NA NA NA NA NA NA NA 0.00 K intron_retention CG11357,I_chr3L_4542781_4542858,C_chr3L_4563905_4578759 chr3L + chr3L_4542249_4542642 chr3L_4542248_4542249;chr3L_4542642_4542643 chr3L_4542167_4542248;chr3L_4542643_4542907 83.33 90.48 77.42 93.06 86.57 90.28 89.35 86.42 87.13 86.67 80.68 82.86 82.03 82.64 78.18 76.42 84.26 83.33 86.96 81.97 82.67 59.09 86.73 86.96 88.33 77.27 85.44 85.29 84.38 56.52 82.11 88.57 97.62 83.09 80.33 89.09 83.72 83.64 82.69 81.31 96.00 84.69 83.17 72.45 86.21 83.10 75.71 96.67 82.44 80.70 87.83 84.48 75.47 78.57 80.62 81.36 82.05 90.91 K multi_cassette Spn,I_chr3L_2511764_2512148 chr3L - chr3L_2508866_2511162 chr3L_2508866_2509363;chr3L_2509501_2509761;chr3L_2510558_2511162 chr3L_2509364_2509500;chr3L_2509762_2510557 chr3L_2508639_2508865;chr3L_2511163_2511763 92.86 88.89 80.00 85.71 100.00 100.00 100.00 90.00 100.00 85.71 100.00 91.67 75.00 100.00 85.71 80.00 100.00 100.00 100.00 100.00 100.00 83.33 92.86 90.00 100.00 75.00 100.00 100.00 100.00 90.91 85.71 85.71 90.00 88.89 100.00 100.00 93.33 100.00 92.86 94.44 85.71 100.00 100.00 90.00 87.50 70.00 88.89 100.00 100.00 90.91 91.67 100.00 88.89 83.33 87.50 100.00 100.00 88.89 K jcn_only_AA Dscam,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3251271_3255892;chr2R_3254472_3255892;chr2R_3250700_3255892;chr2R_3252685_3255892;chr2R_3251854_3255892;chr2R_3252399_3255892;chr2R_3250996_3255892;chr2R_3254133_3255892;chr2R_3252123_3255892;chr2R_3252988_3255892 chr2R_3253610_3255892 chr2R_3255893_3255920 4.65 3.03 2.56 0.00 9.38 4.76 3.70 4.88 5.71 NA NA 10.39 NA 4.17 4.65 0.00 4.76 NA 4.55 8.89 3.12 4.00 5.77 2.56 7.89 6.67 8.16 4.17 11.63 2.33 0.00 NA 3.64 6.52 2.56 3.85 4.55 3.23 7.69 0.00 NA 11.76 5.00 7.69 NA 0.00 0.00 8.82 5.56 10.00 4.55 13.04 NA NA 4.00 8.70 8.70 NA K intron_retention Dap160,I_chr2L_21139943_21140007 chr2L - chr2L_21142013_21142238 chr2L_21142012_21142013;chr2L_21142238_21142239 chr2L_21141625_21142012;chr2L_21142239_21142325 13.81 NA NA 28.57 NA NA 0.00 23.81 10.00 NA NA 25.00 NA NA NA 18.75 NA NA NA 6.67 NA NA 9.09 NA NA NA NA NA NA NA 6.67 NA NA 13.33 NA 14.29 NA NA NA NA NA 19.05 NA 0.00 NA NA NA NA 25.00 NA 5.56 NA NA NA 14.29 NA NA NA K intron_retention I_chr2R_17497464_17498249,CG18870,clt chr2R - chr2R_17504092_17504150 chr2R_17504091_17504092;chr2R_17504150_17504151 chr2R_17503310_17504091;chr2R_17504151_17504379 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 2.70 2.94 0.00 0.00 0.00 1.69 0.00 12.50 0.00 0.00 0.00 4.35 0.00 4.88 4.26 0.00 0.00 0.00 2.94 0.00 0.00 0.00 4.44 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.06 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10103 chr3L - chr3L_6749259_6749322 chr3L_6749258_6749259;chr3L_6749322_6749323 chr3L_6748520_6749258;chr3L_6749323_6749561 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.60 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention unc-13,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_903350_903586 chr4_903349_903350;chr4_903586_903587 chr4_903243_903349;chr4_903587_903686 48.15 52.63 41.18 73.77 35.00 50.00 29.29 53.95 62.50 70.00 45.45 66.67 86.36 43.59 55.56 43.33 48.15 56.25 50.00 45.00 30.77 9.78 41.86 42.86 33.33 40.43 53.45 56.25 30.91 50.00 30.16 40.91 50.00 53.12 42.86 48.15 39.29 41.18 29.03 37.21 53.85 50.00 57.14 25.00 40.00 45.45 47.83 32.31 61.54 63.64 48.39 55.00 69.23 46.15 48.72 47.06 64.00 62.50 K alternative_donor CG12162,I_chr3R_1293876_1293924,I_chr3R_1294319_1294410 chr3R + chr3R_1294319_1294410 chr3R_1294352_1294410 chr3R_1294411_1294510;chr3R_1294219_1294318 100.00 96.30 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 97.30 100.00 100.00 96.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 95.24 96.55 100.00 100.00 100.00 94.44 100.00 96.00 97.30 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 95.83 K intron_retention CG6643,I_chr3R_20370792_20375406 chr3R + chr3R_20378379_20378619 chr3R_20378378_20378379;chr3R_20378619_20378620 chr3R_20378208_20378378;chr3R_20378620_20378705 2.67 0.88 1.38 4.85 0.93 3.60 5.91 0.92 2.73 4.44 5.68 1.85 0.88 1.39 2.29 2.78 3.03 1.89 2.40 2.62 2.78 2.69 3.38 3.03 3.53 1.59 6.15 2.22 0.00 2.15 3.77 0.00 3.60 2.88 5.56 2.67 3.23 3.49 2.83 3.17 2.52 1.96 1.94 1.59 2.41 1.91 4.17 3.67 3.67 1.19 7.87 3.96 0.00 5.97 2.09 1.04 0.00 2.37 K jcn_only_AA CG3558,RI_chr2L_2995071_2997790 chr2L + chr2L_2995071_2995435 chr2L_2995071_2995411 chr2L_2994971_2995070;chr2L_2995436_2996435 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.27 0.00 0.59 0.73 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.48 0.00 0.00 0.85 0.00 0.00 0.00 1.49 0.59 0.00 0.00 0.33 0.00 0.36 1.37 0.00 0.00 0.52 0.00 0.00 1.35 K intron_retention CG14711,CG18764,CG14712 chr3R + chr3R_7450017_7450078 chr3R_7450016_7450017;chr3R_7450078_7450079 chr3R_7449508_7450016;chr3R_7450079_7450213 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 16.67 0.00 NA NA 0.00 NA NA 0.00 NA NA 0.00 0.00 4.76 5.56 NA 2.94 NA 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention Tm1,I_chr3R_11126545_11128874,I_chr3R_11128245_11128874 chr3R + chr3R_11128945_11129362 chr3R_11128944_11128945;chr3R_11129362_11129363 chr3R_11128875_11128944;chr3R_11129363_11130547 0.00 0.00 0.50 0.67 0.00 0.00 1.20 0.88 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.62 0.00 0.00 0.00 0.00 0.00 0.00 1.05 2.35 0.00 0.00 0.00 0.00 0.93 0.35 0.68 0.00 0.00 0.54 0.00 0.98 0.00 0.00 0.00 0.00 0.81 0.00 0.55 1.72 0.92 0.00 0.71 0.00 0.00 0.00 0.43 0.58 0.00 0.00 N multi_cassette Cnx99A,I_chr3R_25142581_25142644,I_chr3R_25144335_25145173,I_chr3R_25145243_25145309,I_chr3R_25145256_25145426 chr3R - chr3R_25141892_25142441 chr3R_25141892_25141958;chr3R_25142088_25142225;chr3R_25142352_25142441 chr3R_25141959_25142087;chr3R_25142226_25142351 chr3R_25141667_25141891;chr3R_25142442_25142582 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG4272 chr2L + chr2L_2365729_2366274;chr2L_2365391_2366274 chr2L_2365902_2366274 chr2L_2366275_2368213;chr2L_2365332_2365390 20.97 23.08 NA 20.51 23.81 NA 32.43 16.67 17.86 8.70 21.74 24.32 21.43 5.00 14.81 25.00 27.27 19.05 25.81 10.00 NA 41.67 22.92 22.58 NA 34.78 29.17 20.00 NA NA NA NA 17.86 24.00 13.64 23.81 17.14 10.00 10.00 19.05 NA 22.86 19.05 11.76 NA NA NA 23.08 25.81 12.00 19.05 14.81 NA NA 23.08 NA NA NA K intron_retention None chrU + chrU_1178980_1179256 chrU_1178979_1178980;chrU_1179256_1179257 90.91 96.15 88.68 83.33 97.67 91.49 93.27 93.00 89.73 96.67 83.33 90.38 93.10 92.42 92.59 91.26 91.67 94.59 90.91 88.79 94.59 85.00 83.02 88.64 84.85 80.85 90.91 93.75 90.91 92.31 89.41 78.12 84.62 93.33 85.71 92.86 94.23 88.24 92.68 87.72 82.61 86.92 90.00 93.02 76.67 75.76 94.29 96.43 91.54 82.05 100.00 85.71 84.62 70.00 88.06 91.43 93.55 90.00 K intron_retention RI_chr4_980473_983026,noncoding_20846,R_chr4_980665_983026,R_chr4_980665_983029,R_chr4_980750_982876,R_chr4_980750_983026 chr4 + chr4_980665_982876 chr4_980664_980665;chr4_982876_982877 chr4_980650_980664;chr4_982877_982973 100.00 NA NA 100.00 NA NA NA 100.00 90.00 NA 100.00 95.00 NA 100.00 NA 100.00 NA NA 100.00 95.24 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 93.33 NA NA NA NA NA 100.00 NA 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 K intron_retention Cam,I_chr2R_8161049_8161270 chr2R + chr2R_8146964_8147544 chr2R_8146963_8146964;chr2R_8147544_8147545 chr2R_8146944_8146963;chr2R_8147545_8147693 1.27 0.30 1.05 0.85 0.46 1.77 3.93 1.11 0.80 0.44 1.62 1.50 0.65 0.81 1.97 1.72 1.02 0.81 0.74 1.50 1.53 4.39 1.82 1.27 3.09 0.84 2.78 2.24 5.56 2.71 1.78 3.29 3.87 1.05 2.86 3.33 0.22 0.45 0.00 1.13 6.69 1.03 1.43 1.18 0.36 2.80 0.54 2.87 1.30 0.93 1.57 0.00 0.00 1.47 0.91 0.00 0.00 2.13 N alternative_donor Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11837971_11838112;chr2R_11837971_11838672 chr2R_11837971_11838662 chr2R_11837919_11837970;chr2R_11838673_11838762 97.44 95.83 96.67 96.10 97.87 98.36 95.65 96.55 95.96 98.55 97.92 96.88 97.37 95.65 96.61 96.55 95.24 98.00 97.50 96.84 95.74 85.39 98.25 97.50 98.44 95.83 97.92 96.77 97.56 97.62 97.40 98.21 97.33 97.26 98.28 97.18 98.63 98.53 97.86 97.14 96.83 97.98 97.22 97.67 98.90 97.70 98.63 97.44 97.89 97.92 97.33 97.78 97.37 98.04 96.77 98.28 97.67 96.88 K intron_retention CG6410 chr2R - chr2R_13612948_13613006 chr2R_13612947_13612948;chr2R_13613006_13613007 chr2R_13612533_13612947;chr2R_13613007_13613143 0.00 NA NA 3.12 NA NA 10.53 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA 12.50 NA NA NA 6.25 NA NA NA NA 0.00 0.00 0.00 0.00 NA NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 K alternative_acceptor cnn,I_chr2R_9332229_9332269,I_chr2R_9333096_9336812,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9332200_9332269 chr2R_9332229_9332269 chr2R_9332270_9332369;chr2R_9332129_9332199 0.00 0.00 1.41 0.00 0.00 0.00 0.76 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.76 0.00 0.00 0.00 1.19 0.00 1.89 1.83 0.00 1.32 0.00 0.00 0.00 1.32 0.00 0.83 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG16940,I_chr3L_212783_212843,Kaz1-ORFA_Kaz1-ORFB chr3L + chr3L_213977_214031 chr3L_213976_213977;chr3L_214031_214032 chr3L_212844_213976;chr3L_214032_215451 0.00 0.00 0.00 31.03 0.00 0.00 0.00 4.65 0.00 NA 0.00 2.70 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.92 4.44 0.00 0.00 0.00 0.00 4.55 0.00 0.00 7.41 NA 4.35 6.25 0.00 4.76 0.00 0.00 0.00 0.00 NA 4.55 0.00 0.00 NA 0.00 3.45 NA 10.00 0.00 4.65 0.00 0.00 NA 0.00 0.00 6.67 NA K intron_retention Pde8,I_chr2R_19555184_19557424,CG42241,I_chr2R_19563512_19564565 chr2R + chr2R_19553559_19559498 chr2R_19553558_19553559;chr2R_19559498_19559499 chr2R_19553474_19553558;chr2R_19559499_19559611 6.19 6.34 7.26 7.78 3.61 4.76 9.77 6.00 3.90 21.79 12.99 5.88 4.05 3.81 6.61 6.19 7.89 6.38 6.25 8.16 13.25 5.26 5.45 10.17 5.66 3.88 7.84 15.91 6.84 5.75 5.73 7.29 4.95 6.06 4.88 3.17 4.02 2.74 4.37 5.05 6.87 5.22 2.44 5.67 4.95 9.21 8.44 6.19 6.33 14.29 6.83 7.07 3.82 8.18 4.38 7.20 13.19 7.55 K jcn_only_AD PGRP-LC chr3L + chr3L_9333602_9335264 chr3L_9333690_9335264 chr3L_9335265_9336229;chr3L_9333584_9333601 96.00 NA NA 95.45 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA 91.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 96.00 NA NA NA NA NA NA NA NA NA K intron_retention RpL14,snoRNA:U49:66Da chr3L + chr3L_8594516_8594747 chr3L_8594515_8594516;chr3L_8594747_8594748 chr3L_8594414_8594515;chr3L_8594748_8594942 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.01 0.01 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 K cassette Best1,I_chr3R_5991957_5995913,RI_chr3R_5993184_5995905 chr3R - chr3R_5988033_5988920 chr3R_5988033_5988754;chr3R_5988800_5988920 chr3R_5988755_5988799 chr3R_5987441_5988032;chr3R_5988921_5989578 1.47 1.47 0.00 3.28 0.00 1.52 1.92 1.72 0.87 1.92 0.00 1.09 5.88 2.63 1.59 0.00 2.78 2.50 2.78 2.13 0.00 2.50 0.00 1.06 2.38 5.13 0.00 0.00 0.00 0.00 1.72 0.00 6.25 3.08 1.43 3.92 1.12 0.00 0.00 0.00 2.94 1.98 0.00 1.75 2.33 1.03 2.30 1.79 0.00 3.39 1.06 0.00 0.00 1.82 0.00 1.47 0.00 0.00 K intron_retention Acph-1,I_chr3R_25820814_25820871 chr3R - chr3R_25818904_25818983 chr3R_25818903_25818904;chr3R_25818983_25818984 chr3R_25818708_25818903;chr3R_25818984_25819130 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 2.41 0.00 7.14 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 NA 0.00 0.00 0.00 0.00 2.22 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Hrb87F chr3R - chr3R_9482848_9484183 chr3R_9484020_9484183 chr3R_9484184_9484235;chr3R_9482571_9482847 99.48 100.00 100.00 99.72 99.22 100.00 100.00 99.38 99.51 100.00 100.00 99.47 100.00 99.40 98.94 99.66 100.00 99.41 99.52 99.83 100.00 100.00 99.69 98.58 99.42 99.32 99.63 99.50 99.15 99.60 99.43 99.06 99.78 99.05 99.48 98.42 99.61 99.48 99.04 98.74 99.68 99.29 98.69 98.44 99.47 99.15 98.82 99.54 99.76 100.00 100.00 99.40 96.97 98.26 99.53 99.35 99.43 96.99 K intron_retention CG14619,RI_chrX_21860097_21868647,I_chrX_21865109_21865522,I_chrX_21869837_21869915 chrX + chrX_21865109_21868000 chrX_21865108_21865109;chrX_21868000_21868001 chrX_21865070_21865108;chrX_21868001_21868211 71.43 NA NA 76.47 63.64 66.67 76.92 73.33 71.43 NA NA 81.25 NA NA NA 72.73 NA 70.00 60.00 65.00 NA 38.46 76.92 NA NA NA NA NA NA 84.62 53.33 NA 73.33 69.23 81.82 38.89 NA NA NA NA NA 71.43 NA NA NA NA NA 66.67 73.68 NA 77.78 NA NA NA 60.00 NA NA NA K alternative_donor CG5199,RI_chr3L_20445700_20445776 chr3L - chr3L_20445700_20445776 chr3L_20445700_20445772 chr3L_20445600_20445699;chr3L_20445777_20445876 87.50 NA 85.71 90.91 NA NA NA 83.33 90.00 NA NA 69.23 NA NA 90.91 91.67 NA NA NA 68.75 NA 88.89 NA 90.00 87.50 NA NA 88.89 NA NA NA 81.82 69.23 100.00 87.50 90.91 75.00 NA 88.89 92.00 83.33 83.33 NA NA 75.00 90.00 NA 77.78 78.57 NA 83.33 NA 87.50 87.50 NA NA NA 100.00 K jcn_only_AA CG5746,Golgin84 chr3R - chr3R_20182174_20182262 chr3R_20182208_20182262 chr3R_20182263_20183645;chr3R_20181719_20182173 90.48 96.67 87.50 100.00 85.71 95.45 94.12 90.00 85.42 NA NA 90.48 92.31 92.00 78.57 85.71 NA 96.00 93.33 89.66 NA NA 89.29 95.00 NA 93.33 92.86 NA 90.91 NA 84.85 NA 76.92 91.11 83.33 81.82 96.23 93.55 90.48 84.21 80.95 94.44 87.50 100.00 90.91 82.35 88.64 81.82 85.71 90.38 94.59 NA 86.49 85.19 100.00 90.91 94.23 86.67 K intron_retention CG11779,CG5835 chr3R - chr3R_14974884_14974956 chr3R_14974883_14974884;chr3R_14974956_14974957 chr3R_14974362_14974883;chr3R_14974957_14975354 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 2.38 0.00 0.00 0.00 K alternative_acceptor CG14464,noncoding_4432 chr2R + chr2R_716999_717069 chr2R_716999_717051 chr2R_716788_716998;chr2R_717070_717439 96.88 96.97 97.44 100.00 93.33 96.55 95.38 91.03 97.56 93.75 100.00 97.14 96.97 94.44 96.77 96.20 100.00 96.88 95.35 96.63 95.45 88.89 96.00 100.00 100.00 96.67 100.00 95.00 93.75 94.74 97.83 96.15 100.00 100.00 100.00 100.00 92.86 100.00 95.24 100.00 95.65 98.28 97.22 100.00 95.45 93.48 92.50 95.65 98.70 96.00 96.55 100.00 100.00 96.88 97.62 96.97 97.67 98.61 K intron_retention CG2219,I_chr4_199813_199889,RI_chr4_202143_202194 chr4 - chr4_199838_199889 chr4_199837_199838;chr4_199889_199890 chr4_199758_199837;chr4_199890_199942 0.00 0.00 0.00 5.63 0.00 0.00 0.91 7.04 1.68 0.00 0.00 4.29 3.92 4.35 0.00 2.30 0.00 0.00 4.65 1.82 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 2.17 2.33 2.56 0.00 3.12 0.00 0.00 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 2.25 4.11 0.00 0.00 0.00 0.00 5.88 2.27 2.90 3.57 K intron_retention RpL7A,I_chrX_6426455_6427156,I_chrX_6426579_6427002 chrX - chrX_6426455_6427156 chrX_6426454_6426455;chrX_6427156_6427157 chrX_6426355_6426454;chrX_6427157_6427194 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Pdk chr2R + chr2R_5319931_5319994 chr2R_5319930_5319931;chr2R_5319994_5319995 chr2R_5319740_5319930;chr2R_5319995_5320569 0.00 3.45 5.88 4.17 NA 0.00 0.00 0.00 5.26 NA NA 0.00 0.00 NA 0.00 5.26 0.00 0.00 0.00 0.00 NA 10.53 0.00 0.00 NA 0.00 0.00 3.85 10.53 0.00 NA NA 0.00 0.00 0.00 5.88 0.00 0.00 0.00 7.69 NA 2.38 0.00 0.00 NA 0.00 0.00 5.56 6.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Fur1,I_chr3R_21179328_21179393,I_chr3R_21179590_21179870,CEI_chr3R_21210600_21222433,I_chr3R_21257704_21287086 chr3R - chr3R_21177936_21179870;chr3R_21179590_21179870 chr3R_21177915_21179870 chr3R_21179871_21179970;chr3R_21177839_21177914 98.67 98.53 96.49 98.80 100.00 97.83 100.00 97.40 98.76 98.78 66.67 95.80 100.00 98.21 96.39 96.49 100.00 97.14 97.83 99.39 89.58 97.64 98.29 95.74 98.92 95.83 98.77 100.00 98.52 97.32 98.67 98.41 98.52 100.00 100.00 100.00 99.25 98.70 100.00 94.41 97.75 99.42 100.00 96.10 98.89 97.21 100.00 99.10 98.48 98.67 98.37 98.15 100.00 100.00 97.47 98.67 100.00 98.97 K intron_retention RhoBTB,RI_chr3L_20370940_20371530,I_chr3L_20374844_20374891 chr3L + chr3L_20371916_20371981 chr3L_20371915_20371916;chr3L_20371981_20371982 chr3L_20371812_20371915;chr3L_20371982_20372179 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3088120_3088191;chr3L_3088129_3088191;chr3L_3088139_3088191 chr3L_3088124_3088191 chr3L_3088192_3088663;chr3L_3087957_3088119 0.00 0.00 0.70 0.91 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.52 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.97 0.60 K jcn_only_AA X11L,RE_chrX_17497873_17498103 chrX + chrX_17495953_17496017 chrX_17495953_17496014 chrX_17495413_17495952;chrX_17496018_17496128 51.43 53.97 52.86 44.05 59.26 51.61 42.70 55.32 43.38 33.93 43.10 46.22 59.62 48.98 47.54 51.43 44.23 55.10 39.29 53.02 52.38 50.00 53.98 51.43 59.72 52.83 56.06 59.38 42.55 57.69 45.45 64.10 46.94 47.57 50.91 49.06 40.66 58.49 56.94 62.50 60.42 58.49 47.73 44.26 49.02 46.51 49.06 55.70 52.67 47.37 56.44 46.00 56.67 51.28 54.17 57.69 51.22 39.58 K jcn_only_AA glu chr2L - chr2L_16734268_16734335 chr2L_16734292_16734335 chr2L_16734336_16736019;chr2L_16733617_16734267 0.00 0.00 0.00 0.00 1.64 0.00 0.88 0.00 0.48 3.12 0.00 0.75 1.35 0.00 2.30 0.00 1.20 0.00 0.00 1.49 1.45 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 2.60 1.45 0.00 2.01 1.64 0.00 0.00 2.22 0.00 0.88 0.00 0.00 1.33 1.82 1.35 0.00 1.20 0.00 1.88 0.00 2.00 3.08 0.00 0.00 0.00 0.74 1.05 1.18 K jcn_only_AA Dystrophin,E_chr3R_15325437_15329360 chr3R + chr3R_15320041_15331969 chr3R_15320041_15331589 chr3R_15319935_15320040 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 2.25 0.00 0.00 1.49 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 10.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 K intron_retention CG5978,I_chr3L_8616035_8616091 chr3L - chr3L_8616035_8616176 chr3L_8616034_8616035;chr3L_8616176_8616177 chr3L_8615935_8616034;chr3L_8616177_8616191 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 NA NA 3.23 NA 0.00 NA 0.00 0.00 6.67 0.00 3.23 NA NA 0.00 6.67 NA 0.00 0.00 NA NA NA NA NA 0.00 9.09 NA NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA 9.52 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 N jcn_only_AA Iap2,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11821304_11821703 chr2R_11821325_11821703 chr2R_11821704_11822085;chr2R_11820289_11821303 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.16 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette CG11299,noncoding_8970,I_chr2R_19602423_19609308,I_chr2R_19619053_19619186 chr2R + chr2R_19601642_19609732;chr2R_19601642_19616571 chr2R_19601642_19602203;chr2R_19602423_19609732,chr2R_19602423_19616571 chr2R_19602204_19602422 chr2R_19601628_19601641;chr2R_19616572_19616757 98.04 96.00 100.00 97.22 90.48 100.00 100.00 95.83 97.06 100.00 100.00 97.22 96.97 100.00 100.00 97.83 100.00 95.65 96.88 98.21 100.00 100.00 89.29 94.44 90.00 100.00 95.00 100.00 83.33 91.67 95.83 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 90.00 97.50 95.00 100.00 100.00 93.75 100.00 100.00 98.04 92.31 96.30 93.33 100.00 92.86 96.88 94.12 100.00 100.00 K intron_retention CG15100 chr2R - chr2R_14737606_14737683 chr2R_14737605_14737606;chr2R_14737683_14737684 chr2R_14736770_14737605;chr2R_14737684_14737805 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.30 1.27 0.00 1.67 0.00 3.12 0.00 3.03 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chrX_15223901_15223968,HDAC6,I_chrX_15232958_15233665 chrX + chrX_15232056_15232104 chrX_15232055_15232056;chrX_15232104_15232105 chrX_15230648_15232055;chrX_15232105_15232698 5.90 8.33 0.00 12.50 NA 0.00 5.56 7.41 7.84 NA NA 6.67 NA 6.25 6.67 0.00 14.29 0.00 0.00 0.00 NA 10.34 6.25 9.68 NA NA 4.35 NA 31.58 0.00 22.22 3.70 7.41 0.00 NA 12.50 2.70 0.00 5.26 5.26 NA 3.33 NA 5.00 0.00 7.14 0.00 8.33 6.25 6.45 5.56 22.22 0.00 12.00 10.34 18.52 0.00 3.70 K jcn_only_AD CG3529 chr3L + chr3L_9442916_9443117 chr3L_9442925_9443117 chr3L_9443118_9443168;chr3L_9442789_9442915 100.00 100.00 95.24 100.00 NA 90.91 100.00 100.00 100.00 97.56 100.00 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 98.51 100.00 NA 100.00 100.00 97.67 NA NA NA 100.00 95.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 96.15 NA 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 NA 100.00 100.00 NA K intron_retention RpL24,I_chr2L_13394941_13395015 chr2L - chr2L_13394455_13394520 chr2L_13394454_13394455;chr2L_13394520_13394521 chr2L_13394122_13394454;chr2L_13394521_13394799 100.00 100.00 100.00 100.00 100.00 99.96 100.00 100.00 99.98 99.96 100.00 100.00 100.00 100.00 100.00 100.00 99.95 99.96 100.00 99.99 100.00 100.00 99.98 100.00 100.00 100.00 99.97 100.00 99.98 100.00 99.96 100.00 100.00 100.00 99.97 100.00 100.00 99.97 99.99 100.00 100.00 100.00 99.95 99.96 99.99 100.00 100.00 100.00 100.00 100.00 100.00 99.95 100.00 99.98 100.00 100.00 100.00 99.99 K intron_retention CEI_chrX_17177009_17196871,CG5445,I_chrX_17196752_17196871,RI_chrX_17196772_17196871,I_chrX_17196820_17196875,I_chrX_17198393_17198730 chrX + chrX_17196820_17196871 chrX_17196819_17196820;chrX_17196871_17196872 chrX_17196720_17196819;chrX_17196872_17196971 35.48 36.00 47.83 61.11 25.00 46.15 33.33 46.43 41.30 41.67 NA 50.00 30.77 42.86 46.15 54.84 37.50 14.29 35.48 26.83 53.85 17.65 40.74 29.17 NA 25.00 41.38 43.48 26.92 42.11 29.41 15.38 34.78 52.38 42.86 56.25 25.93 37.50 31.82 24.24 23.53 45.45 33.33 26.09 41.67 44.00 23.08 15.15 41.38 29.17 36.36 16.67 0.00 23.53 45.45 27.78 26.32 17.14 K jcn_only_AD Art3,I_chr3R_11054902_11054955 chr3R - chr3R_11054902_11054955;chr3R_11054902_11054972 chr3R_11054902_11054965 chr3R_11054802_11054901;chr3R_11054973_11055055 96.55 96.08 100.00 97.62 100.00 97.14 100.00 100.00 96.88 100.00 100.00 97.01 NA 96.88 95.00 96.30 NA 97.62 97.14 99.14 97.14 100.00 96.34 98.59 100.00 NA 94.34 100.00 94.44 94.23 86.67 96.00 96.43 96.36 92.11 96.15 98.39 97.14 95.45 97.40 NA 95.00 95.83 100.00 100.00 91.53 96.55 96.30 96.88 93.10 96.39 95.45 95.00 96.43 91.67 94.52 99.15 95.35 K jcn_only_AD CG4502,I_chr2L_7196721_7196787,I_chr2L_7196858_7204207 chr2L - chr2L_7196858_7203942;chr2L_7196858_7203934 chr2L_7196858_7203938 chr2L_7196788_7196857;chr2L_7203943_7204239 65.52 70.83 68.89 69.64 75.00 71.79 61.19 66.67 67.50 NA 73.81 61.82 80.00 62.79 63.83 70.18 75.00 52.94 62.79 62.71 61.54 NA 61.70 58.62 NA 58.62 80.00 NA 56.67 64.86 70.27 59.09 65.00 65.52 68.42 65.71 NA NA 47.83 80.00 70.97 73.91 58.54 66.67 NA 74.51 65.00 61.43 53.33 65.22 71.88 67.86 NA NA 75.44 57.14 NA 54.55 K jcn_only_AA CG5367 chr2L - chr2L_10355223_10355481 chr2L_10355227_10355481 chr2L_10355482_10355868;chr2L_10355066_10355222 100.00 100.00 100.00 100.00 100.00 98.31 100.00 97.73 98.86 100.00 100.00 99.13 100.00 100.00 100.00 98.13 100.00 100.00 98.41 96.38 100.00 100.00 100.00 100.00 100.00 98.15 98.57 100.00 98.91 100.00 97.22 98.77 100.00 100.00 100.00 100.00 97.50 NA 98.08 95.96 99.00 99.11 96.00 100.00 100.00 98.35 100.00 98.70 98.51 98.08 100.00 100.00 98.18 95.00 100.00 100.00 100.00 99.19 N cassette CG1513,I_chr2R_5778649_5778739 chr2R - chr2R_5771508_5772126 chr2R_5771508_5771589;chr2R_5771712_5772126 chr2R_5771590_5771711 chr2R_5771402_5771507;chr2R_5772127_5772213 100.00 100.00 100.00 78.46 100.00 100.00 84.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 75.82 100.00 100.00 100.00 100.00 89.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG9293,RI_chr2L_13386386_13386487,I_chr2L_13394941_13395015 chr2L - chr2L_13386258_13386529 chr2L_13386257_13386258;chr2L_13386529_13386530 chr2L_13386099_13386257;chr2L_13386530_13386587 4.08 15.38 0.00 14.58 0.00 0.00 11.76 4.17 5.63 0.00 0.00 10.00 8.33 6.67 0.00 2.78 0.00 11.76 0.00 4.65 5.00 0.00 0.00 6.67 14.29 9.09 5.88 0.00 12.77 0.00 10.00 3.45 2.78 0.00 0.00 11.54 5.26 0.00 0.00 6.35 8.89 8.00 0.00 6.45 4.88 5.63 4.00 4.60 0.00 7.41 0.00 NA 0.00 0.00 0.00 0.00 6.67 3.33 K intron_retention CG4210 chr3R + chr3R_11039944_11040011 chr3R_11039943_11039944;chr3R_11040011_11040012 chr3R_11039892_11039943;chr3R_11040012_11040087 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 3.17 0.00 0.00 0.00 0.00 0.00 0.00 5.77 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 2.63 0.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD CG15173,RI_chr2L_19044304_19044369 chr2L - chr2L_19044084_19044153 chr2L_19044084_19044144 chr2L_19043946_19044083;chr2L_19044154_19044303 45.83 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 45.83 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Mical,I_chr3R_5828974_5830131,noncoding_15780,I_chr3R_5829878_5830377,I_chr3R_5834577_5835458,I_chr3R_5843939_5844218,I_chr3R_5847106_5863537,I_chr3R_5863483_5863537,I_chr3R_5863613_5868513 chr3R - chr3R_5828974_5829095 chr3R_5828973_5828974;chr3R_5829095_5829096 chr3R_5828874_5828973;chr3R_5829096_5829372 0.00 0.00 0.00 2.27 0.00 0.00 0.00 5.88 0.00 0.00 0.00 4.88 0.00 0.00 0.00 2.94 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.00 0.00 1.67 3.85 2.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.52 K intron_retention CG16912,I_chr2R_20674247_20674291,I_chr2R_20674654_20674897,RI_chr2R_20676692_20676888 chr2R - chr2R_20669484_20669541 chr2R_20669483_20669484;chr2R_20669541_20669542 chr2R_20669230_20669483;chr2R_20669542_20669730 0.00 0.00 0.00 12.90 0.00 0.00 0.00 5.41 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 4.55 0.00 0.00 7.14 0.00 0.00 0.00 7.32 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 11.76 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_donor CG17184 chr3R - chr3R_7059293_7059643 chr3R_7059293_7059355 chr3R_7059124_7059292;chr3R_7059644_7060166 0.00 0.00 1.08 0.00 1.22 0.00 0.79 4.62 3.41 0.00 0.00 0.70 0.00 0.00 3.37 1.16 0.00 0.00 0.00 1.01 1.15 1.82 0.00 0.00 0.00 0.00 0.85 0.00 1.75 1.69 1.15 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 1.25 0.00 2.61 1.79 0.00 0.00 1.05 0.00 0.00 1.38 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 1.54 K intron_retention Irp-1B chr3R - chr3R_6236439_6236500 chr3R_6236438_6236439;chr3R_6236500_6236501 chr3R_6236338_6236438;chr3R_6236501_6237011 0.00 0.00 0.00 5.80 5.41 3.33 1.69 0.00 3.37 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 2.27 0.00 2.35 0.00 0.00 1.82 0.00 3.23 2.70 7.27 0.00 1.67 2.70 8.62 5.66 0.00 1.43 0.00 11.36 0.00 0.00 0.00 0.00 3.92 1.35 4.65 0.00 0.00 0.00 0.00 0.00 4.71 0.00 1.69 0.00 2.50 0.00 0.00 1.85 3.03 2.47 K jcn_only_AD Zn72D,RF_chr3L_16100887_16102721,I_chr3L_16105199_16105253 chr3L - chr3L_16105199_16105253;chr3L_16105199_16105318;chr3L_16105199_16105431 chr3L_16105199_16105299 chr3L_16105099_16105198;chr3L_16105432_16105487 0.00 0.00 0.00 2.63 2.70 0.00 2.74 0.00 0.72 0.00 0.00 0.00 0.00 1.59 2.27 1.39 0.00 4.55 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 8.00 4.17 0.00 12.90 4.62 0.00 2.86 0.00 NA NA 1.92 0.00 2.38 1.92 0.00 0.00 2.63 0.00 0.00 0.00 NA 0.00 1.61 0.00 2.63 0.00 NA NA 8.70 NA 0.00 2.38 K alternative_donor CG33506,RI_chr2R_10745870_10745924 chr2R - chr2R_10745870_10745928 chr2R_10745870_10745924 chr2R_10745770_10745869;chr2R_10745929_10746024 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 3.23 NA 0.00 0.00 0.00 NA 5.56 0.00 0.00 NA 5.00 2.50 0.00 0.00 0.00 2.50 0.00 0.00 0.00 15.00 3.33 2.44 0.00 0.00 0.00 0.00 3.33 0.00 2.17 0.00 0.00 NA 0.00 0.00 1.96 2.13 2.56 0.00 3.57 0.00 0.00 0.00 0.00 3.57 2.70 0.00 2.56 K intron_retention PP2A-B' chr3R + chr3R_13995271_13995378 chr3R_13995270_13995271;chr3R_13995378_13995379 chr3R_13995206_13995270;chr3R_13995379_13995820 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.46 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Mmp1,E_chr2R_20560380_20562585,I_chr2R_20564123_20565214,I_chr2R_20569965_20572193 chr2R - chr2R_20559830_20560073 chr2R_20559829_20559830;chr2R_20560073_20560074 chr2R_20559732_20559829;chr2R_20560074_20560374 42.86 NA NA 77.78 66.67 NA 64.71 NA 54.55 12.82 NA 22.22 NA NA NA NA 60.00 NA NA NA NA 24.59 53.33 43.48 53.85 NA 35.71 39.13 46.15 42.86 47.37 35.29 39.39 60.00 53.33 35.29 36.36 20.00 42.11 42.11 37.50 56.25 NA 18.92 20.00 41.67 45.45 44.44 58.82 48.00 50.00 NA NA NA NA 40.00 42.86 36.73 K intron_retention CG9153,Myo61F chr3L + chr3L_1314336_1314472 chr3L_1314335_1314336;chr3L_1314472_1314473 chr3L_1314325_1314335;chr3L_1314473_1314709 61.90 53.57 70.37 50.00 62.96 70.00 84.62 59.09 68.92 52.63 60.87 64.81 57.14 58.06 57.14 40.00 61.90 69.23 60.00 61.40 69.57 79.17 50.00 55.56 50.00 76.19 47.22 73.33 65.52 65.38 59.52 58.82 66.67 72.73 64.71 73.91 60.00 58.62 51.92 76.39 78.57 55.22 54.84 46.51 69.23 72.00 55.00 84.62 55.22 48.48 69.44 61.90 60.00 66.67 67.57 52.63 62.50 75.00 K alternative_donor CG6294,CG6299,I_chrX_15358771_15359763,I_chrX_15359667_15359763 chrX + chrX_15358459_15359763 chrX_15359505_15359763 chrX_15359764_15359863;chrX_15357988_15358458 35.29 36.36 75.00 83.33 42.86 75.00 63.64 60.00 57.89 25.00 50.00 63.64 29.41 62.50 62.50 72.73 80.00 25.00 83.33 35.29 37.50 NA 14.29 30.77 66.67 40.00 22.22 NA 12.50 11.11 50.00 20.00 0.00 70.00 75.00 22.22 13.33 14.29 20.00 23.08 8.33 56.25 80.00 26.67 16.67 18.18 15.00 20.00 61.54 18.18 17.65 42.86 10.00 18.18 66.67 30.00 25.00 42.86 K intron_retention CG2678 chr3R + chr3R_3739555_3739805 chr3R_3739554_3739555;chr3R_3739805_3739806 chr3R_3739493_3739554;chr3R_3739806_3740359 70.00 NA 63.64 71.43 NA NA 100.00 91.67 66.67 NA NA 80.00 NA NA NA 73.68 NA NA NA 61.11 NA NA NA NA NA NA NA NA NA NA 70.00 NA NA 66.67 NA NA NA NA 45.45 NA NA 70.00 NA NA NA NA NA NA 92.86 NA NA NA NA NA 66.67 NA NA NA K multi_cassette unc-13,I_chr4_897821_902468,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_899619_903586 chr4_899619_902468;chr4_902576_903242;chr4_903350_903586 chr4_902469_902575;chr4_903243_903349 chr4_899519_899618;chr4_903587_903686 62.50 NA NA 42.86 NA NA 60.00 80.00 62.50 NA NA NA NA NA NA 85.71 NA 100.00 NA NA NA 62.50 57.14 NA NA 33.33 NA NA 71.43 NA 80.00 NA NA NA NA 7.14 100.00 NA 75.00 NA NA 50.00 NA 50.00 NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA K mutually_exclusive Nc73EF,F_chr3L_16952838_16955936,CE_chr3L_16952842_16955936,I_chr3L_16952985_16955434,I_chr3L_16953768_16954599 chr3L + chr3L_16952985_16954599,chr3L_16954703_16955434 chr3L_16952985_16953637,chr3L_16953768_16955434 chr3L_16954600_16954702 chr3L_16953638_16953767 chr3L_16952885_16952984;chr3L_16955435_16955513 43.06 43.06 55.88 19.77 60.38 56.86 40.24 39.76 45.83 21.57 28.57 12.50 23.91 50.00 42.25 62.96 46.81 50.94 21.57 48.31 54.17 41.51 45.38 37.23 36.36 40.38 42.72 25.37 30.23 43.75 50.00 45.83 41.86 53.57 49.12 23.53 35.00 43.01 40.00 29.55 35.00 47.32 45.24 37.50 38.46 46.94 44.64 48.28 51.38 36.84 44.63 35.94 48.65 43.18 46.15 37.31 52.38 59.09 K alternative_donor I_chr2R_11986525_11986583,mRpL34,RI_chr2R_11991687_11992537 chr2R + chr2R_11986521_11986583 chr2R_11986525_11986583 chr2R_11986584_11986683;chr2R_11986476_11986520 0.00 0.00 0.00 1.59 0.00 0.00 2.00 1.59 0.79 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 1.05 0.00 NA NA 4.17 NA NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 2.22 0.00 K intron_retention Mi-2 chr3L - chr3L_19875398_19875464 chr3L_19875397_19875398;chr3L_19875464_19875465 chr3L_19875146_19875397;chr3L_19875465_19875688 88.89 91.67 90.00 96.97 93.02 70.21 88.89 88.79 89.36 81.82 97.62 87.61 73.08 90.00 83.64 90.53 86.54 75.51 88.00 90.43 85.71 79.41 94.74 85.71 80.00 89.58 96.10 89.83 92.00 91.67 85.42 87.93 86.27 90.62 83.72 100.00 87.27 88.24 86.27 90.72 89.06 87.50 87.76 89.55 92.42 90.22 86.67 92.59 91.27 87.06 88.57 84.78 90.48 79.25 92.16 82.09 89.00 95.51 K alternative_acceptor CG40439,I_chr2L_22690863_22690905 chr2L - chr2L_22690836_22690905;chr2L_22690863_22690905 chr2L_22690855_22690905 chr2L_22690906_22691005;chr2L_22690763_22690835 4.76 2.63 6.00 4.84 0.00 2.70 5.03 2.54 3.72 7.69 3.45 4.21 8.77 5.26 4.17 6.15 2.17 3.12 7.27 6.10 3.33 10.53 3.23 2.56 3.70 4.76 4.44 5.26 11.76 0.00 2.27 7.41 NA 5.43 7.14 11.11 11.76 NA NA 2.94 5.56 4.82 4.44 5.26 7.14 4.76 4.55 0.00 6.06 4.76 6.06 7.32 3.33 NA 4.55 7.69 3.17 4.84 K intron_retention CG10103,noncoding_10997 chr3L - chr3L_6747558_6748172 chr3L_6747557_6747558;chr3L_6748172_6748173 chr3L_6747493_6747557;chr3L_6748173_6748223 94.90 95.16 100.00 93.75 93.62 98.11 85.71 87.84 95.15 93.33 95.12 98.82 100.00 85.71 95.65 92.45 91.89 92.68 97.78 90.20 91.89 98.36 97.92 95.00 97.73 98.04 94.90 98.61 97.22 92.86 95.31 93.75 84.91 92.65 100.00 91.49 96.51 98.41 96.05 90.48 98.57 95.51 97.14 93.10 84.78 95.15 95.31 89.71 94.05 96.46 94.59 93.33 88.00 93.22 92.98 95.12 91.43 93.88 K intron_retention CG17219,RFI_chr2L_3030576_3030666,GABPI chr2L + chr2L_3030576_3030666 chr2L_3030575_3030576;chr2L_3030666_3030667 chr2L_3030562_3030575;chr2L_3030667_3030766 84.00 78.57 83.33 89.29 60.00 83.33 84.62 70.00 72.00 NA NA 80.95 64.29 66.67 83.33 84.00 61.54 70.00 78.95 94.12 66.67 94.74 91.67 100.00 90.91 88.24 100.00 NA 92.31 NA 70.83 80.00 73.68 77.27 90.00 87.50 NA 100.00 87.50 80.00 90.00 76.19 69.23 93.33 90.00 84.62 NA 62.50 80.77 100.00 91.67 90.00 100.00 100.00 78.95 92.31 100.00 72.22 K jcn_only_AD woc,I_chr3R_23089174_23089688,I_chr3R_23089174_23089695,I_chr3R_23096096_23096561 chr3R - chr3R_23089174_23089498;chr3R_23089174_23089695 chr3R_23089174_23089688 chr3R_23089074_23089173;chr3R_23089696_23089772 0.00 0.00 9.09 4.88 0.00 0.00 0.00 3.92 0.00 NA 0.00 0.00 10.34 0.00 0.00 3.45 0.00 0.00 3.33 2.00 NA 3.57 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 2.86 0.00 NA 0.00 0.00 0.00 NA 5.71 NA 1.79 0.00 0.00 NA 0.00 NA 3.45 2.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention l(3)neo18 chr3L - chr3L_12130879_12130937 chr3L_12130878_12130879;chr3L_12130937_12130938 chr3L_12130593_12130878;chr3L_12130938_12131044 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor katanin-60 chr3R - chr3R_1056937_1057778 chr3R_1057036_1057778 chr3R_1057779_1057940;chr3R_1056715_1056936 12.90 20.00 13.04 10.34 16.67 15.00 8.82 10.00 18.60 18.18 21.05 11.54 29.41 11.11 12.50 12.50 5.56 15.38 9.38 17.31 13.64 20.00 10.64 11.76 10.71 25.00 25.00 19.05 15.00 15.00 9.30 20.00 27.78 12.77 9.09 10.71 28.57 13.64 16.13 17.07 NA 10.42 10.71 10.34 14.29 12.50 8.33 16.00 11.54 9.09 15.15 10.71 10.53 4.35 9.09 8.70 13.04 13.04 K intron_retention CG4966 chr2R + chr2R_13575454_13575511 chr2R_13575453_13575454;chr2R_13575511_13575512 chr2R_13575359_13575453;chr2R_13575512_13577030 8.20 NA NA NA NA NA 7.69 NA 15.00 NA NA 14.29 NA NA NA 11.76 NA NA NA 8.70 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Snr1,I_chr3R_1297469_1297546 chr3R + chr3R_1297053_1297546 chr3R_1297469_1297546 chr3R_1297547_1297646;chr3R_1296531_1297052 0.53 0.00 1.61 1.42 1.00 0.00 0.00 0.00 1.10 3.09 0.00 0.88 2.50 0.00 0.00 0.00 1.03 0.00 2.47 0.32 0.00 2.79 0.41 0.48 0.74 0.00 0.00 1.54 1.34 0.54 3.19 0.53 3.18 0.74 1.41 0.68 0.00 0.53 0.39 1.58 0.00 0.42 0.00 1.24 1.88 1.21 0.00 0.00 1.22 2.58 1.06 3.36 0.00 0.00 0.00 1.14 0.00 0.27 K jcn_only_AA mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818575_7818853;chr3R_7818597_7818853 chr3R_7818607_7818853 chr3R_7818854_7818892;chr3R_7818507_7818574 8.82 NA 14.29 20.00 NA NA 24.00 5.00 21.05 NA NA 6.90 NA 0.00 NA 10.34 25.00 NA 11.11 8.82 0.00 NA NA NA NA NA NA NA NA NA NA NA 6.67 5.26 NA NA NA NA NA NA NA 14.29 19.05 NA NA 4.76 NA NA 5.00 NA 4.55 NA NA NA 9.52 NA NA 6.25 K jcn_only_AA RluA-2,I_chr2L_10480906_10481097 chr2L + chr2L_10481571_10481646;chr2L_10481571_10481629 chr2L_10481571_10481621 chr2L_10481509_10481570;chr2L_10481647_10481707 68.66 NA 70.00 73.68 NA NA 73.33 64.10 85.71 NA 75.00 79.41 75.00 NA 65.52 62.16 NA NA 85.00 66.04 NA 56.52 75.00 NA NA 66.67 81.82 NA 62.50 57.14 39.34 NA 66.67 68.75 61.90 NA NA NA 72.73 77.36 64.00 74.36 NA 75.00 80.95 64.86 79.17 68.57 64.86 NA 82.76 NA 66.67 58.33 80.00 65.38 NA 56.52 K intron_retention Yippee chrX - chrX_13280782_13280847 chrX_13280781_13280782;chrX_13280847_13280848 chrX_13280622_13280781;chrX_13280848_13281073 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 1.39 0.00 0.00 0.00 4.08 2.50 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5630 chr3R + chr3R_16753189_16754401 chr3R_16753188_16753189;chr3R_16754401_16754402 chr3R_16752910_16753188;chr3R_16754402_16754407 99.21 98.41 100.00 93.75 98.15 100.00 98.70 100.00 99.28 100.00 95.65 99.26 100.00 98.73 99.08 99.22 98.84 100.00 100.00 99.42 98.00 98.31 98.68 100.00 97.30 100.00 100.00 98.21 95.88 96.83 99.29 99.01 100.00 99.26 100.00 98.48 98.46 100.00 97.62 99.45 99.22 99.42 98.63 100.00 99.39 99.47 98.90 99.12 99.47 97.22 98.63 97.44 100.00 97.18 99.21 98.94 98.75 99.44 K jcn_only_AA CG8611,I_chrX_17309193_17309577 chrX - chrX_17315954_17316015 chrX_17315957_17316015 chrX_17316016_17316173;chrX_17313969_17315953 76.00 NA NA NA NA NA 60.00 48.15 NA NA NA 67.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 76.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 76.19 77.14 NA NA NA NA NA NA NA NA 90.62 K jcn_only_AA CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516330_21517073;chr3L_21516330_21517821 chr3L_21516330_21517792 chr3L_21516311_21516329 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8177074_8177129 chr2L_8177074_8177120 chr2L_8176876_8177073;chr2L_8177130_8177689 0.00 0.00 0.51 0.36 0.00 0.00 0.45 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.64 0.00 0.00 1.00 0.00 0.00 1.15 0.00 0.00 0.61 0.00 0.00 0.32 1.25 1.08 0.00 0.56 0.53 0.00 0.00 0.28 0.69 0.00 0.00 0.00 0.00 0.00 0.31 1.12 0.66 0.00 0.00 0.00 0.47 0.00 0.00 0.00 K intron_retention CG9934 chr2L - chr2L_13014676_13014925 chr2L_13014675_13014676;chr2L_13014925_13014926 chr2L_13014351_13014675;chr2L_13014926_13015038 0.00 0.00 0.00 3.49 0.00 0.00 0.00 2.60 3.16 0.00 0.00 0.00 0.00 2.38 0.00 5.00 0.00 0.00 0.00 1.20 0.00 1.98 1.72 0.00 2.50 0.00 0.00 0.00 1.59 0.00 0.00 3.51 1.10 1.59 5.00 0.00 0.00 0.00 0.00 4.60 1.49 0.00 0.00 0.00 0.00 1.37 2.27 0.00 1.54 0.00 1.69 5.88 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG42358,CG42359 chr3R - chr3R_14987762_14987837 chr3R_14987761_14987762;chr3R_14987837_14987838 chr3R_14987512_14987761;chr3R_14987838_14987963 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 12.50 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1316 chr3L + chr3L_4285273_4285424 chr3L_4285272_4285273;chr3L_4285424_4285425 chr3L_4285175_4285272;chr3L_4285425_4285531 0.00 2.11 0.00 0.00 1.59 0.00 1.02 0.87 0.63 1.67 0.00 0.62 0.00 0.00 0.00 1.63 0.00 0.00 1.10 1.34 0.00 0.00 1.61 0.90 0.00 0.00 2.75 0.00 0.00 0.00 2.90 0.00 0.00 3.85 1.49 0.00 0.00 0.00 0.00 1.94 4.11 2.56 0.00 0.00 0.00 0.00 0.00 0.00 2.04 3.48 0.00 0.00 0.00 0.00 2.11 0.93 0.00 0.00 K intron_retention CG4572,FI_chr3R_15689914_15690042 chr3R - chr3R_15689914_15690042 chr3R_15689913_15689914;chr3R_15690042_15690043 chr3R_15689814_15689913;chr3R_15690043_15690114 94.74 100.00 100.00 97.37 100.00 91.67 82.61 96.55 96.15 100.00 87.50 87.10 NA 81.25 94.74 90.91 91.67 100.00 86.36 92.31 100.00 88.89 94.74 88.89 100.00 95.83 96.43 92.31 100.00 NA 94.12 NA 100.00 94.44 NA 100.00 88.89 NA 90.00 100.00 100.00 92.00 100.00 100.00 NA 100.00 92.86 100.00 93.75 100.00 100.00 NA 92.86 NA 90.00 91.67 80.95 94.44 K intron_retention unc-13,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_902576_903242 chr4_902575_902576;chr4_903242_903243 chr4_902560_902575;chr4_903243_903342 100.00 100.00 100.00 100.00 100.00 92.86 100.00 97.56 100.00 NA NA 100.00 100.00 100.00 100.00 95.35 100.00 94.12 100.00 100.00 100.00 86.21 83.33 100.00 94.12 95.00 100.00 92.31 95.65 NA 96.00 NA 83.33 100.00 100.00 92.86 72.73 100.00 83.33 96.30 94.12 96.30 100.00 89.47 90.00 100.00 100.00 100.00 100.00 100.00 94.44 91.67 NA NA 100.00 100.00 100.00 92.86 K intron_retention CG12811,RI_chr3R_5873666_5874292 chr3R - chr3R_5873492_5873562 chr3R_5873491_5873492;chr3R_5873562_5873563 chr3R_5872972_5873491;chr3R_5873563_5873665 3.70 1.52 0.00 0.00 2.13 3.70 0.00 1.27 5.08 4.44 3.03 2.22 0.00 0.00 1.82 6.90 0.00 0.00 3.51 3.67 0.00 6.45 4.88 5.75 0.00 0.00 12.50 9.38 11.11 6.00 8.70 7.02 4.49 5.13 7.69 11.11 4.29 5.17 3.95 8.64 11.63 3.23 0.00 2.44 4.40 8.57 0.00 3.77 4.65 9.26 0.00 0.00 4.40 5.17 3.70 0.00 2.26 1.14 K alternative_donor kay,E_chr3R_25616137_25617114 chr3R + chr3R_25616577_25617114;chr3R_25616533_25617114 chr3R_25615618_25617114 chr3R_25617115_25617214;chr3R_25615520_25615617 3.03 7.69 3.03 0.00 8.00 4.00 3.57 14.75 1.45 0.00 7.14 1.39 14.89 4.00 3.45 0.00 3.70 7.41 12.90 1.01 4.76 7.35 0.00 3.03 0.00 3.45 0.00 1.64 2.27 0.00 4.17 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 2.56 0.00 6.56 3.85 4.00 0.00 4.35 3.85 7.41 1.96 3.33 2.78 5.88 0.00 5.88 3.57 0.00 5.26 5.00 K cassette CE_chr4_957556_960799,mGluRA,I_chr4_959744_963392 chr4 + chr4_959744_963392 chr4_959744_960799;chr4_961344_963392 chr4_960800_961343 chr4_959644_959743;chr4_963393_963492 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention CG18854,I_chr2L_9790307_9790615,I_chr2L_9790310_9790453,I_chr2L_9790310_9790556 chr2L - chr2L_9790310_9790615 chr2L_9790309_9790310;chr2L_9790615_9790616 chr2L_9790210_9790309;chr2L_9790616_9790656 0.00 0.00 0.00 2.64 0.44 0.00 0.47 0.52 0.30 0.56 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.32 0.00 0.00 0.27 0.26 0.00 0.39 0.60 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.87 0.45 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_donor CG17255,I_chrX_10366177_10366615,RI_chrX_10366177_10367270 chrX - chrX_10366177_10367360;chrX_10366177_10367201;chrX_10366177_10367270;chrX_10366177_10368085;chrX_10366177_10366615 chrX_10366177_10367458 chrX_10366077_10366176;chrX_10368086_10368118 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.66 1.39 1.18 1.01 0.98 0.00 1.64 1.01 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.98 1.19 0.00 0.00 0.54 0.82 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 2.50 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 K intron_retention mib2 chr2L + chr2L_19035001_19035760 chr2L_19035000_19035001;chr2L_19035760_19035761 chr2L_19034580_19035000;chr2L_19035761_19035865 1.92 0.00 0.00 2.50 0.00 3.23 2.20 1.28 0.83 0.00 4.35 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 4.00 9.09 0.00 3.33 0.00 2.13 0.00 5.26 9.68 5.00 5.13 0.00 7.84 0.00 0.00 5.00 0.00 0.00 5.26 1.43 12.50 3.45 3.12 0.00 8.33 3.23 0.00 7.41 2.78 2.86 3.39 1.92 0.00 0.00 1.89 6.25 6.12 10.53 K intron_retention Mob4 chr2R - chr2R_2583349_2583396 chr2R_2583348_2583349;chr2R_2583396_2583397 chr2R_2582619_2583348;chr2R_2583397_2583465 5.00 0.00 0.00 26.92 11.76 NA 0.00 0.00 7.41 NA NA 5.00 NA NA NA NA NA NA NA 7.14 NA 15.00 9.52 8.33 9.09 15.79 22.22 41.67 42.86 0.00 NA 0.00 NA 14.29 0.00 NA 4.17 9.09 6.25 4.35 NA 0.00 NA NA NA 0.00 13.79 NA 3.57 18.18 4.76 NA NA 0.00 0.00 0.00 0.00 NA N cassette Hcs,I_chr3R_1303481_1304607 chr3R + chr3R_1301523_1302262 chr3R_1301523_1302027;chr3R_1302185_1302262 chr3R_1302028_1302184 chr3R_1301185_1301522;chr3R_1302263_1303269 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 68.42 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 K jcn_only_AD pst,I_chr3L_7352698_7352777 chr3L - chr3L_7351881_7351959 chr3L_7351881_7351950 chr3L_7351791_7351880;chr3L_7351960_7352154 100.00 NA NA 100.00 NA 100.00 96.88 NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA 96.97 100.00 100.00 NA NA NA 100.00 100.00 NA NA NA NA 100.00 NA NA 100.00 NA 100.00 96.15 NA 100.00 NA NA NA NA 96.55 NA 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 100.00 K alternative_acceptor CG2691,noncoding_23539 chrX - chrX_13518134_13518196 chrX_13518140_13518196 chrX_13518197_13518439;chrX_13517580_13518133 100.00 100.00 100.00 100.00 100.00 96.43 96.30 97.37 95.65 100.00 100.00 98.11 95.00 100.00 100.00 96.00 100.00 100.00 100.00 97.44 100.00 100.00 97.83 97.96 100.00 100.00 95.83 97.50 95.92 97.73 100.00 100.00 98.94 97.37 100.00 94.29 100.00 100.00 98.04 97.53 100.00 98.31 100.00 100.00 100.00 97.22 100.00 98.73 100.00 96.77 100.00 96.55 96.77 93.33 96.00 100.00 100.00 98.70 K intron_retention Utx chr2L - chr2L_10273123_10273196 chr2L_10273122_10273123;chr2L_10273196_10273197 chr2L_10272996_10273122;chr2L_10273197_10273406 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG17683,I_chr2R_18774_18869,I_chr2R_19002_19060 chr2R + chr2R_18998_19064 chr2R_19002_19064 chr2R_19065_19124;chr2R_18902_18997 100.00 93.75 92.31 96.30 100.00 100.00 90.48 100.00 100.00 NA 91.67 96.00 100.00 92.31 94.74 100.00 100.00 100.00 94.44 100.00 87.50 100.00 100.00 100.00 100.00 100.00 96.15 100.00 93.33 90.00 95.83 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 95.24 NA 95.45 100.00 92.86 88.89 100.00 81.25 100.00 96.67 100.00 88.24 100.00 100.00 88.89 100.00 90.91 91.67 92.86 K intron_retention CG11753 chr3R + chr3R_4479008_4479080 chr3R_4479007_4479008;chr3R_4479080_4479081 chr3R_4478941_4479007;chr3R_4479081_4479145 90.00 NA 90.00 100.00 NA NA 92.86 100.00 92.31 NA 83.33 81.82 88.89 NA NA NA NA NA 87.50 91.67 NA NA 71.43 NA NA 93.33 92.86 NA 95.24 NA NA NA NA 100.00 NA NA 66.67 NA 90.00 88.89 87.50 90.91 NA 70.00 81.25 NA NA NA NA 77.78 90.00 NA NA NA NA 88.89 100.00 NA K jcn_only_AA CG7852,Cct1,Cct2 chr3L + chr3L_1540958_1541655 chr3L_1540958_1541435 chr3L_1540752_1540957;chr3L_1541656_1541677 79.13 NA NA NA NA NA NA NA 84.00 NA NA NA NA NA NA NA NA NA NA NA NA 97.22 63.41 NA NA NA NA NA 73.91 85.00 NA NA 90.00 NA NA 96.43 84.85 80.00 71.88 76.19 NA NA NA NA 76.00 78.26 NA 92.00 NA 73.91 75.00 NA NA NA NA NA NA NA K alternative_last_exon Rab35,noncoding_24897 chrX - chrX_20052303_20052928 chrX_20052562_20052928 chrX_20052003_20052302 chrX_20052374_20052561 chrX_20052929_20053057 2.99 1.75 3.31 0.91 3.68 1.27 4.35 1.02 3.01 1.71 1.46 4.10 5.61 3.68 2.81 2.89 3.79 4.14 1.48 2.20 1.43 8.05 2.62 3.82 3.00 1.95 3.83 4.35 2.95 2.84 4.74 3.37 4.41 2.87 3.03 2.55 4.34 1.31 2.62 4.67 4.35 2.27 3.01 5.32 2.51 2.99 5.31 1.86 2.69 3.56 3.57 3.61 2.33 2.42 1.02 3.16 1.94 1.32 K intron_retention CG12567,I_chr2LHet_21570_31874 chr2LHet - chr2LHet_21384_21435 chr2LHet_21383_21384;chr2LHet_21435_21436 chr2LHet_21308_21383;chr2LHet_21436_21569 4.62 0.00 6.25 12.00 8.00 0.00 6.76 9.72 8.33 0.00 4.35 2.99 8.11 6.98 3.64 9.41 0.00 0.00 10.77 3.51 3.03 0.00 15.15 6.45 6.25 5.00 16.36 20.83 NA 0.00 0.00 0.00 NA 11.11 0.00 7.41 0.00 7.41 0.00 10.91 0.00 6.25 4.88 2.08 NA 6.90 0.00 7.41 5.88 5.71 7.55 0.00 0.00 0.00 2.00 3.57 3.23 0.00 K jcn_only_AA CG2247 chrX - chrX_11502530_11502585 chrX_11502533_11502585 chrX_11502586_11502673;chrX_11502267_11502529 89.66 95.24 100.00 86.21 91.67 NA 93.94 93.55 87.72 NA NA 88.57 85.71 84.62 96.00 89.19 100.00 90.48 85.71 95.12 NA 81.82 97.56 80.65 NA 88.89 93.10 NA NA 88.57 93.55 90.00 90.28 95.45 95.65 NA 86.67 NA 89.29 89.66 NA 87.50 88.46 95.45 95.24 89.29 NA NA 84.09 85.71 87.80 91.30 NA NA 82.14 95.45 91.30 85.71 K intron_retention snama chr2R + chr2R_19976791_19977078 chr2R_19976790_19976791;chr2R_19977078_19977079 chr2R_19976465_19976790;chr2R_19977079_19977228 4.84 3.33 0.00 4.84 6.45 2.44 5.26 1.79 4.11 0.00 2.94 5.88 8.00 10.71 4.17 4.65 0.00 0.00 0.00 3.08 5.71 10.71 5.00 4.44 5.41 9.68 3.77 7.14 10.53 0.00 4.65 0.00 2.86 7.27 0.00 8.33 3.77 4.44 0.00 2.94 13.04 3.95 6.25 0.00 8.33 6.25 4.88 2.94 6.49 3.92 10.00 6.45 5.00 6.67 6.98 5.88 5.71 5.26 K intron_retention None chrU + chrU_1183510_1184082 chrU_1183509_1183510;chrU_1184082_1184083 13.46 11.82 9.01 33.33 7.65 11.11 16.04 16.16 14.25 17.44 17.65 16.01 16.29 10.78 13.37 13.36 12.44 12.43 12.40 17.25 15.79 18.26 12.92 11.98 14.29 8.54 17.33 26.79 13.91 18.70 15.90 23.14 22.22 14.88 12.86 13.33 12.08 10.18 9.73 11.31 16.45 13.46 12.67 11.44 12.69 14.11 11.98 20.73 12.53 18.44 12.68 13.55 10.56 13.99 14.83 12.67 12.45 15.94 K intron_retention CG31908 chr2L - chr2L_7027020_7027193 chr2L_7027019_7027020;chr2L_7027193_7027194 chr2L_7026724_7027019;chr2L_7027194_7027261 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.73 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 98.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Nrt chr3L + chr3L_16767467_16767532 chr3L_16767467_16767529 chr3L_16766814_16767466;chr3L_16767533_16770386 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA 98.80 NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 100.00 100.00 100.00 100.00 NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA 100.00 100.00 K jcn_only_AA CG5245,Pros25 chr3R + chr3R_8257945_8258014 chr3R_8257945_8258008 chr3R_8257789_8257944;chr3R_8258015_8258279 100.00 100.00 100.00 100.00 100.00 100.00 99.77 100.00 99.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.64 100.00 100.00 100.00 99.86 100.00 100.00 100.00 100.00 100.00 99.66 100.00 99.38 100.00 100.00 100.00 99.66 100.00 99.63 99.78 99.82 100.00 100.00 100.00 100.00 100.00 100.00 99.84 100.00 100.00 100.00 99.79 100.00 99.68 100.00 100.00 100.00 99.82 100.00 99.62 K jcn_only_AD RhoGDI chr3L + chr3L_19922009_19923914;chr3L_19921875_19923914 chr3L_19921911_19923914 chr3L_19923915_19924114;chr3L_19921868_19921874 4.93 5.49 6.43 2.36 7.80 4.11 3.00 1.91 5.06 6.25 6.18 3.31 8.40 3.05 6.64 7.17 10.56 4.35 7.34 6.63 4.60 4.71 1.69 2.00 6.36 5.65 1.34 0.74 2.08 4.03 6.54 6.49 24.24 7.17 0.00 0.00 5.61 4.44 4.72 8.41 2.60 7.19 5.63 0.00 8.33 2.58 0.72 5.49 5.33 5.79 2.47 4.93 0.85 0.00 5.83 1.67 3.30 6.00 K intron_retention CG7458 chr3L + chr3L_21948960_21949479 chr3L_21948959_21948960;chr3L_21949479_21949480 chr3L_21948713_21948959;chr3L_21949480_21949583 15.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.53 N jcn_only_AD CG11357,I_chr3L_4542781_4542858,C_chr3L_4563905_4578759 chr3L + chr3L_4542249_4551001 chr3L_4542908_4551001 chr3L_4551002_4551938;chr3L_4542167_4542248 100.00 100.00 100.00 92.57 100.00 100.00 100.00 100.00 100.00 100.00 93.75 98.06 100.00 100.00 100.00 96.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.20 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG4250,I_chr2R_18551419_18551493,E_chr2R_18551558_18551756 chr2R + chr2R_18551380_18551493 chr2R_18551379_18551380;chr2R_18551493_18551494 chr2R_18551319_18551379;chr2R_18551494_18551557 1.58 0.73 0.85 1.63 0.58 1.98 1.32 2.41 1.59 1.15 1.20 1.58 1.36 2.34 2.67 1.68 0.99 1.82 2.13 1.57 1.10 2.86 2.41 2.01 1.52 1.79 3.78 1.63 2.34 1.00 0.66 0.53 0.67 2.30 2.66 1.17 2.19 1.96 0.70 1.15 0.78 2.39 1.65 3.37 1.04 0.96 2.07 0.94 1.95 0.70 1.79 1.55 0.72 0.62 1.79 1.82 1.06 1.01 K cassette CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8184851_8186116 chr2L_8184851_8185125;chr2L_8185279_8186116 chr2L_8185126_8185278 chr2L_8184815_8184850;chr2L_8186117_8186197 12.20 5.41 6.98 1.92 10.71 3.33 4.44 4.69 10.64 23.81 3.03 13.89 10.34 7.69 8.16 14.29 7.69 10.53 7.84 15.62 13.04 25.81 10.14 17.39 8.33 8.89 7.27 30.77 25.00 23.08 13.33 30.77 17.24 7.27 16.22 25.71 10.34 6.38 12.50 20.45 16.67 10.75 2.70 17.24 43.48 23.08 14.81 18.18 7.79 26.67 10.53 9.09 20.00 33.33 12.20 7.41 19.05 23.53 K intron_retention CG5500 chr3R + chr3R_22705559_22705806 chr3R_22705558_22705559;chr3R_22705806_22705807 chr3R_22705264_22705558;chr3R_22705807_22706182 0.00 0.00 0.00 6.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 1.85 1.67 0.00 0.00 0.00 0.00 0.00 0.00 3.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17549,I_chr2L_19387937_19387993,I_chr2L_19388570_19389922 chr2L - chr2L_19387392_19387537 chr2L_19387391_19387392;chr2L_19387537_19387538 chr2L_19387075_19387391;chr2L_19387538_19387769 12.50 19.05 NA 11.76 16.67 20.00 35.00 22.22 18.42 21.05 36.36 11.76 NA NA 17.65 11.11 NA 33.33 NA 10.64 45.45 8.22 7.41 12.00 12.50 NA 0.00 11.11 9.68 12.50 25.00 9.09 22.22 18.75 5.88 8.33 13.16 13.04 7.69 12.50 NA 24.24 NA 19.35 9.09 25.00 5.00 NA 22.58 4.35 7.41 16.00 3.12 6.06 16.67 9.52 4.29 NA K jcn_only_AD d4 chr2R + chr2R_1182569_1182620;chr2R_1182563_1182620;chr2R_1182573_1182620 chr2R_1182566_1182620 chr2R_1182621_1183461;chr2R_1182302_1182562 2.75 1.01 3.09 2.84 2.22 5.48 2.31 6.42 7.21 0.00 1.20 3.91 1.43 6.06 1.33 0.00 3.70 2.86 1.56 0.00 2.60 4.85 3.88 2.75 4.23 6.25 0.84 6.33 3.23 3.53 4.92 2.86 2.73 2.91 1.61 1.37 4.35 1.06 0.83 2.05 1.18 3.40 0.00 1.06 0.87 1.03 0.91 2.68 3.91 1.59 2.78 3.33 1.83 2.08 3.90 2.97 2.78 3.38 K jcn_only_AD CG1399,I_chr2R_3574133_3574191 chr2R - chr2R_3565240_3565502;chr2R_3565240_3565323;chr2R_3565240_3565310;chr2R_3565240_3565403;chr2R_3565240_3565374 chr2R_3565240_3566074 chr2R_3564840_3565239 2.08 3.03 3.85 15.00 3.23 6.25 12.31 15.22 0.00 0.00 0.00 0.00 0.00 3.23 0.00 2.78 0.00 2.78 0.00 0.00 1.89 0.00 0.00 4.00 0.00 0.00 1.67 8.57 1.79 0.00 1.75 0.00 2.90 1.92 10.53 7.69 0.00 3.03 0.00 2.08 0.00 5.45 0.00 2.22 0.00 3.39 0.00 3.92 3.64 6.52 1.64 2.56 11.11 2.44 0.00 2.50 2.38 5.41 N alternative_acceptor BM-40-SPARC,I_chr3R_22696095_22696231,I_chr3R_22696095_22696291,I_chr3R_22696095_22697413 chr3R - chr3R_22696095_22697647 chr3R_22696130_22697647 chr3R_22697648_22697767;chr3R_22695995_22696094 0.14 0.07 0.11 0.35 0.03 0.15 0.35 0.14 0.20 0.16 0.08 0.12 0.11 0.10 0.09 0.11 0.14 0.05 0.07 0.18 0.11 0.37 0.12 0.21 0.51 0.37 0.25 0.17 0.62 0.18 0.16 0.22 0.12 0.13 0.19 0.33 0.06 0.00 0.04 0.25 0.48 0.23 0.13 0.03 0.31 0.17 0.08 0.75 0.15 0.08 0.16 0.07 0.09 0.10 0.19 0.04 0.11 0.31 K intron_retention F_chr3RHet_1879085_1900358,Alg-2 chr3RHet - chr3RHet_1898930_1898983 chr3RHet_1898929_1898930;chr3RHet_1898983_1898984 chr3RHet_1898558_1898929;chr3RHet_1898984_1899090 0.00 0.00 0.00 1.47 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 K cassette l(2)gl,I_chr2L_12929_13559,I_chr2L_12929_13682,I_chr2L_15712_16650,I_chr2L_17208_18260,I_chr2L_17213_21135,RI_chr2L_20021_20830,I_chr2L_20974_21065 chr2L - chr2L_12929_13682 chr2L_12929_13519;chr2L_13626_13682 chr2L_13520_13625 chr2L_12829_12928;chr2L_13683_13782 100.00 98.98 100.00 97.42 100.00 100.00 100.00 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 99.32 100.00 100.00 100.00 99.58 100.00 99.33 99.34 100.00 100.00 96.15 100.00 98.75 97.85 99.28 99.25 100.00 100.00 100.00 100.00 98.44 99.32 99.10 100.00 100.00 98.75 99.52 100.00 99.27 100.00 98.99 100.00 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CEI_chr3R_10927927_10937314,CG6934 chr3R - chr3R_10937912_10957329;chr3R_10937912_10957499 chr3R_10937912_10957457 chr3R_10937315_10937911;chr3R_10957500_10957513 3.85 0.00 8.33 6.06 NA 0.00 NA 8.51 1.47 NA 4.35 3.57 NA 0.00 0.00 0.00 NA 1.32 0.00 5.66 5.13 8.70 1.72 2.33 4.00 NA 0.00 0.00 6.25 4.44 0.00 NA 10.00 3.57 2.70 3.92 4.84 2.56 3.28 3.80 0.00 4.35 0.00 3.90 NA 2.13 5.00 8.89 6.38 NA 5.17 4.76 4.35 NA 4.00 7.69 NA 0.00 K intron_retention Tak1,I_chrX_20388150_20389255 chrX - chrX_20388150_20392250 chrX_20388149_20388150;chrX_20392250_20392251 chrX_20388050_20388149;chrX_20392251_20392299 0.00 2.78 4.17 0.00 0.00 4.55 0.00 3.08 2.14 0.00 4.17 0.00 5.00 0.00 2.27 0.00 0.00 0.00 0.00 1.46 3.17 0.97 1.45 1.33 4.65 0.00 2.60 9.09 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 3.49 0.00 0.93 1.92 3.28 0.00 0.00 1.59 0.00 2.94 1.37 3.33 0.00 0.00 2.27 0.00 0.00 1.23 0.00 K intron_retention Nedd4,I_chr3L_17526753_17527450,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17526749_17527450 chr3L_17526748_17526749;chr3L_17527450_17527451 chr3L_17526708_17526748;chr3L_17527451_17527550 68.09 66.67 76.00 74.55 50.00 76.32 77.78 67.86 63.16 90.00 66.67 78.21 59.26 72.73 68.18 75.41 75.00 67.50 65.91 70.41 71.43 84.21 63.64 75.86 58.54 65.00 66.67 NA 66.67 74.07 72.09 75.00 92.11 76.19 79.41 79.49 73.33 61.90 67.57 83.33 75.00 62.50 56.67 68.00 85.00 54.84 68.18 59.57 60.24 57.89 68.18 58.62 50.00 71.43 66.00 55.00 40.00 45.83 K intron_retention CG42542,I_chr3R_11024452_11024586 chr3R + chr3R_11027926_11027987 chr3R_11027925_11027926;chr3R_11027987_11027988 chr3R_11027746_11027925;chr3R_11027988_11028723 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.00 14.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341925_20342041;chr3L_20341636_20342041;chr3L_20341509_20342041;chr3L_20341865_20342041;chr3L_20341486_20342041;chr3L_20341522_20342041;chr3L_20341751_20342041;chr3L_20341629_20342041;chr3L_20341598_20342041;chr3L_20341759_20342041 chr3L_20341530_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Mnt chrX + chrX_3587966_3592777;chrX_3587966_3592774;chrX_3587966_3592150 chrX_3587966_3592372 chrX_3587244_3587965;chrX_3592778_3593060 2.78 5.26 6.45 2.86 0.00 10.34 9.30 0.00 0.00 0.00 5.00 0.00 0.00 7.69 3.12 3.03 0.00 5.00 0.00 0.00 0.00 3.70 6.90 4.76 0.00 5.00 4.55 5.88 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 5.13 0.00 8.82 2.78 0.00 5.56 4.76 0.00 10.00 9.09 0.00 0.00 3.92 25.00 4.35 12.50 0.00 28.57 0.00 0.00 0.00 0.00 K intron_retention Aats-his,noncoding_24608,I_chrX_18409716_18411646,EI_chrX_18409716_18414750 chrX + chrX_18409716_18411843 chrX_18409715_18409716;chrX_18411843_18411844 chrX_18409616_18409715;chrX_18411844_18412059 2.02 1.03 3.53 2.33 0.00 0.00 2.11 2.22 2.21 1.79 0.00 4.35 3.85 1.92 2.74 4.84 0.00 0.00 4.29 2.61 3.45 7.45 1.17 2.76 4.00 1.43 4.23 5.83 3.60 2.40 1.16 2.90 2.61 1.10 4.48 0.00 1.29 0.88 4.31 1.73 2.02 1.42 0.00 3.17 2.04 3.28 0.00 4.07 1.87 1.47 2.56 0.98 0.00 1.11 0.00 0.84 0.00 1.27 K cassette RI_chrX_8468338_8469380,I_chrX_8468338_8477573,CG12065,I_chrX_8469524_8477579,CE_chrX_8469528_8477573 chrX + chrX_8468441_8477573 chrX_8468441_8469380;chrX_8469524_8477573 chrX_8469381_8469523 chrX_8468351_8468440;chrX_8477574_8477673 86.84 85.62 91.61 92.93 92.17 88.28 93.53 94.03 92.74 81.61 95.92 89.80 78.43 85.71 91.62 90.91 90.85 85.93 96.10 88.77 93.38 71.90 82.27 85.35 83.17 93.20 88.27 85.71 63.86 86.01 90.91 85.95 87.41 93.15 81.82 94.34 86.84 83.10 76.30 80.31 90.08 92.81 92.00 85.03 89.19 85.95 78.53 88.82 91.41 84.67 82.87 81.42 80.17 79.17 87.98 85.07 84.54 85.31 K jcn_only_AA CG18213 chr3R - chr3R_12865398_12865459 chr3R_12865407_12865459 chr3R_12865460_12865528;chr3R_12865340_12865397 100.00 NA 92.31 97.44 NA NA 100.00 100.00 100.00 100.00 100.00 95.35 100.00 96.55 100.00 100.00 95.45 100.00 90.48 96.23 NA 100.00 100.00 100.00 NA NA 100.00 90.00 NA 100.00 100.00 NA NA 97.67 NA NA 100.00 95.45 100.00 100.00 NA 100.00 NA 100.00 NA NA NA NA 97.56 100.00 100.00 96.00 NA NA 97.06 NA NA NA K intron_retention fon,I_chr2L_19385355_19385669,CE_chr2L_19385715_19386086,I_chr2L_19388570_19389922 chr2L - chr2L_19383763_19383880 chr2L_19383762_19383763;chr2L_19383880_19383881 chr2L_19383476_19383762;chr2L_19383881_19384036 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.45 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG10153,RI_chr2R_10644944_10645110 chr2R - chr2R_10644944_10645110 chr2R_10645056_10645110 chr2R_10645111_10645175;chr2R_10644844_10644943 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG17471,RI_chr4_1213397_1214333,RI_chr4_1213397_1216053,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1213289_1213331;chr4_1213275_1213331 chr4_1213279_1213331 chr4_1213332_1213341;chr4_1213122_1213274 96.83 93.62 97.30 93.55 NA 96.55 100.00 93.75 95.24 NA NA 89.19 95.92 100.00 100.00 95.90 100.00 90.00 100.00 98.85 NA NA 96.00 94.55 100.00 NA 93.18 NA NA 100.00 97.62 95.65 93.75 96.81 97.78 95.83 100.00 91.67 97.37 93.02 97.96 98.73 97.37 95.12 100.00 94.79 93.15 91.43 98.11 98.31 97.26 100.00 96.97 98.36 97.06 95.38 96.83 94.87 K cassette BubR1,mle chr2R - chr2R_1857501_1861002 chr2R_1857501_1857662;chr2R_1860627_1861002 chr2R_1857663_1860626 chr2R_1857253_1857500;chr2R_1861003_1861398 100.00 100.00 100.00 93.18 100.00 97.83 100.00 98.90 99.11 95.45 100.00 98.90 98.11 100.00 100.00 100.00 97.50 97.83 100.00 99.09 100.00 100.00 100.00 100.00 97.37 100.00 98.46 97.62 100.00 97.50 100.00 100.00 100.00 98.90 100.00 93.02 97.92 100.00 100.00 98.68 96.97 99.03 100.00 100.00 96.67 100.00 97.83 100.00 98.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 K intron_retention Mi-2,Su(Tpl),F_chr3L_19887973_19889888 chr3L - chr3L_19888139_19889897 chr3L_19888138_19888139;chr3L_19889897_19889898 chr3L_19884529_19888138;chr3L_19889898_19889947 14.29 0.00 14.29 16.33 14.29 7.41 15.56 20.75 15.38 NA 11.11 16.92 16.67 9.68 13.33 12.50 12.50 0.00 18.42 13.33 16.67 20.00 22.73 10.53 NA 24.00 11.11 24.14 11.76 10.00 15.38 NA 6.67 15.94 11.11 0.00 10.00 7.14 NA 18.92 NA 12.50 16.67 12.00 NA 15.38 NA 5.26 14.29 14.29 16.67 19.05 NA NA 9.38 14.29 NA 0.00 N intron_retention RhoGAP18B,I_chrX_19040176_19040738 chrX - chrX_19040176_19047060 chrX_19040175_19040176;chrX_19047060_19047061 chrX_19040076_19040175;chrX_19047061_19047301 100.00 100.00 63.16 77.78 100.00 66.67 80.49 67.74 82.35 100.00 100.00 77.50 66.67 100.00 65.22 72.09 100.00 100.00 100.00 57.97 NA 100.00 74.19 76.92 65.00 100.00 100.00 100.00 100.00 100.00 75.86 100.00 100.00 75.00 100.00 54.17 50.91 100.00 66.67 100.00 100.00 76.56 100.00 61.11 100.00 100.00 100.00 100.00 73.58 100.00 62.07 100.00 100.00 68.42 100.00 100.00 72.09 100.00 K intron_retention dNAT1,CG13319,RI_chr2R_8812301_8816468 chr2R + chr2R_8805410_8805499 chr2R_8805409_8805410;chr2R_8805499_8805500 chr2R_8805395_8805409;chr2R_8805500_8808364 28.12 NA NA 46.67 NA NA 41.18 NA 31.25 NA 25.00 NA NA NA NA NA NA NA 35.71 NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA K intron_retention CG1427,RI_chr3R_1427548_1427635 chr3R + chr3R_1427392_1427454 chr3R_1427391_1427392;chr3R_1427454_1427455 chr3R_1427247_1427391;chr3R_1427455_1427547 6.67 0.00 9.52 NA 0.00 6.25 8.70 11.11 19.44 NA NA 12.12 0.00 NA 14.29 16.67 7.14 14.29 28.57 11.76 NA NA 6.25 0.00 NA NA 0.00 NA NA NA 0.00 NA 0.00 7.41 NA NA 0.00 0.00 0.00 0.00 NA 15.38 NA 14.29 NA 10.53 11.11 NA 8.57 13.04 0.00 5.00 6.67 0.00 12.00 0.00 3.23 5.56 K alternative_donor Rox8,I_chr3R_19872211_19872659,I_chr3R_19872214_19872630,I_chr3R_19872214_19872636,I_chr3R_19872214_19872838,I_chr3R_19876189_19876240 chr3R - chr3R_19872211_19873682 chr3R_19872211_19873540 chr3R_19872114_19872210;chr3R_19873683_19873709 88.89 100.00 75.00 87.50 NA 83.33 88.89 71.43 86.67 NA 100.00 85.71 NA 75.00 87.50 90.00 80.00 83.33 83.33 73.68 90.00 100.00 100.00 88.89 100.00 85.71 90.00 NA 100.00 100.00 88.89 NA 100.00 87.50 100.00 100.00 NA NA NA NA NA 91.67 83.33 85.71 NA 85.71 88.89 100.00 92.86 100.00 100.00 87.50 87.50 100.00 90.91 NA 100.00 100.00 K jcn_only_AA SPoCk,I_chr3L_22776339_22776519,I_chr3L_22777865_22778359 chr3L + chr3L_22768238_22770210 chr3L_22768238_22770191 chr3L_22768075_22768237;chr3L_22770211_22771924 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.57 0.00 0.00 0.00 1.09 NA 4.76 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA 2.86 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 NA NA K intron_retention Ten-m,EI_chr3L_22298865_22299141,I_chr3L_22300015_22300646,I_chr3L_22374182_22399991 chr3L - chr3L_22297630_22300646 chr3L_22297629_22297630;chr3L_22300646_22300647 chr3L_22297346_22297629;chr3L_22300647_22300652 0.00 NA NA NA NA NA NA NA 11.11 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention capu,I_chr2L_3884519_3902594,I_chr2L_3887896_3888648 chr2L - chr2L_3873323_3873384 chr2L_3873322_3873323;chr2L_3873384_3873385 chr2L_3873019_3873322;chr2L_3873385_3874395 2.70 1.85 6.06 5.00 3.23 0.00 2.38 4.84 3.70 0.00 2.50 5.77 5.71 2.56 5.26 0.00 5.41 0.00 5.56 7.25 3.03 3.39 2.70 1.33 2.94 5.56 0.00 0.00 0.00 5.00 0.00 4.65 0.00 3.45 4.35 4.35 2.86 1.85 0.00 1.33 4.29 2.90 0.00 0.00 2.63 3.33 0.00 3.57 4.41 0.00 1.47 0.00 0.00 0.00 7.27 0.00 2.25 4.17 K intron_retention Liprin-alpha chr2L + chr2L_6724085_6724826 chr2L_6724084_6724085;chr2L_6724826_6724827 chr2L_6723995_6724084;chr2L_6724827_6725096 21.05 22.22 19.35 13.51 NA 13.64 22.22 26.47 12.73 12.77 20.00 27.08 25.00 19.23 24.00 25.93 NA 17.65 29.17 21.82 25.00 32.00 13.56 11.76 17.65 15.00 22.73 25.93 15.56 18.18 22.73 21.05 19.74 17.39 24.24 29.55 10.29 16.67 9.80 16.00 30.00 19.35 33.33 24.14 22.22 24.14 11.76 18.95 24.00 25.00 19.51 21.43 30.77 14.29 29.63 20.00 15.38 28.21 K jcn_only_AA CG31431 chr3R + chr3R_17696730_17697693;chr3R_17696730_17697703 chr3R_17696730_17697680 chr3R_17696406_17696729;chr3R_17697704_17697862 2.41 0.70 2.41 1.51 3.70 2.63 0.40 1.72 2.12 1.85 0.64 1.10 2.16 0.00 2.67 4.31 3.82 1.70 2.72 3.69 3.12 4.92 2.38 5.19 0.00 1.75 2.58 0.00 2.33 3.12 5.44 2.70 4.69 2.32 3.53 1.79 0.81 0.00 1.42 2.47 2.04 2.77 2.75 0.62 1.23 3.60 2.86 2.70 2.52 3.23 2.48 1.46 0.00 2.86 1.55 0.90 2.91 3.49 K jcn_only_AA CG13933,I_chr3L_1773911_1773984 chr3L - chr3L_1773524_1773577 chr3L_1773527_1773577 chr3L_1773578_1773910;chr3L_1773423_1773523 100.00 100.00 100.00 100.00 92.86 97.22 100.00 95.89 100.00 100.00 NA 100.00 97.96 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 98.25 100.00 100.00 100.00 100.00 100.00 93.55 97.06 96.97 100.00 100.00 97.50 96.72 100.00 100.00 100.00 97.30 100.00 100.00 100.00 98.11 95.24 100.00 100.00 97.56 100.00 100.00 96.43 100.00 98.53 91.67 100.00 100.00 97.50 100.00 100.00 96.30 K intron_retention Rap2l,I_chr2R_19951753_19952256,RI_chr2R_19952181_19952256 chr2R + chr2R_19951097_19952256 chr2R_19951096_19951097;chr2R_19952256_19952257 chr2R_19950576_19951096;chr2R_19952257_19952356 3.23 2.00 3.92 2.70 0.00 2.04 4.29 2.17 3.70 7.41 3.23 2.60 0.00 2.04 3.92 1.92 0.00 5.00 3.85 1.47 0.00 7.79 4.23 0.00 6.06 0.00 8.24 9.38 5.71 4.88 3.23 0.00 5.13 3.61 2.63 6.25 2.86 4.17 3.33 2.70 3.77 3.88 7.69 3.12 0.00 0.00 0.00 5.08 6.38 1.54 4.17 0.00 0.00 4.76 1.64 0.00 0.00 4.62 K intron_retention PMCA,I_chr4_350028_350896,E_chr4_350055_363541,I_chr4_350064_350896,I_chr4_350959_363547,I_chr4_352629_354970,I_chr4_352629_358161,RI_chr4_355160_363547,I_chr4_371836_372509,I_chr4_373671_374568,I_chr4_376108_379519 chr4 - chr4_350055_350896 chr4_350054_350055;chr4_350896_350897 chr4_349964_350054;chr4_350897_350958 13.04 13.16 6.52 24.32 8.33 7.50 62.50 22.45 14.61 22.73 0.00 10.77 5.45 20.00 11.76 22.45 8.89 11.90 17.50 12.05 8.89 8.51 14.29 15.38 20.00 18.18 25.71 0.00 13.04 15.15 6.67 10.00 15.15 15.79 8.70 19.05 10.71 17.14 8.33 17.54 9.52 15.71 26.09 13.56 10.71 15.00 9.76 17.65 17.86 6.38 12.00 22.58 6.67 10.81 5.56 15.62 11.54 11.94 N intron_retention CG31856 chr2L - chr2L_13071878_13072837 chr2L_13071877_13071878;chr2L_13072837_13072838 chr2L_13071540_13071877;chr2L_13072838_13073112 65.62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 31.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor foxo,RI_chr3R_9883151_9883462,I_chr3R_9907161_9907218 chr3R + chr3R_9882747_9883462 chr3R_9883151_9883462 chr3R_9883463_9883562;chr3R_9882717_9882746 93.33 100.00 80.00 92.86 100.00 100.00 92.31 96.00 96.30 NA 100.00 72.00 100.00 93.33 90.91 86.21 84.62 75.00 93.33 100.00 100.00 NA 88.89 87.50 83.33 91.67 100.00 NA NA 100.00 56.25 NA NA 100.00 80.00 80.00 75.00 NA NA 88.89 NA 95.45 91.67 100.00 NA 100.00 NA 100.00 86.36 100.00 100.00 83.33 NA NA 100.00 100.00 NA 100.00 K intron_retention kal-1 chr3R + chr3R_19967383_19970914 chr3R_19967382_19967383;chr3R_19970914_19970915 chr3R_19967124_19967382;chr3R_19970915_19971592 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.00 0.00 2.15 0.00 0.00 1.22 1.82 0.85 1.19 2.35 0.00 0.00 0.85 1.94 6.00 2.13 0.00 0.00 1.05 1.45 0.00 0.00 0.00 0.54 0.47 0.00 0.68 0.00 0.74 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.51 N alternative_acceptor wun2,I_chr2R_5304606_5304660 chr2R + chr2R_5304841_5304916 chr2R_5304841_5304899 chr2R_5304772_5304840;chr2R_5304917_5305073 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Mat89Ba,RI_chr3R_12096350_12096418 chr3R - chr3R_12096350_12096418 chr3R_12096363_12096418 chr3R_12096419_12096518;chr3R_12096250_12096349 94.44 90.00 100.00 94.74 100.00 NA 100.00 95.24 96.97 NA 90.91 94.44 92.86 100.00 100.00 90.91 100.00 100.00 85.71 94.12 NA 92.31 95.24 94.12 100.00 100.00 100.00 94.12 87.50 90.00 75.00 NA 100.00 96.00 90.00 90.91 100.00 NA NA 92.86 NA 90.48 100.00 91.67 NA 87.50 100.00 93.33 95.65 100.00 92.86 84.62 88.89 NA 100.00 NA 100.00 90.00 K intron_retention gp210,I_chr2R_1653709_1654789,I_chr2R_1655359_1655422 chr2R + chr2R_1658111_1658310 chr2R_1658110_1658111;chr2R_1658310_1658311 chr2R_1657975_1658110;chr2R_1658311_1658361 0.00 0.00 0.00 3.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD abo chr2L - chr2L_10974211_10974271 chr2L_10974211_10974267 chr2L_10973448_10974210;chr2L_10974272_10975309 98.08 84.62 87.50 95.00 93.94 92.59 96.00 100.00 97.33 NA NA 98.08 96.55 95.83 100.00 92.31 100.00 NA 97.06 92.42 NA 100.00 97.06 100.00 NA 100.00 100.00 NA NA 100.00 87.50 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 96.36 95.65 96.55 96.43 100.00 100.00 NA 92.11 100.00 NA NA NA NA 100.00 NA 100.00 94.12 K alternative_donor G-salpha60A chr2R + chr2R_19830338_19831752;chr2R_19830125_19831752 chr2R_19830349_19831752 chr2R_19831753_19832263;chr2R_19830091_19830124 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 9.09 5.26 NA 0.00 NA 0.00 0.00 NA 0.00 1.59 0.00 0.00 0.00 NA 1.64 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA K alternative_acceptor CG3860,RI_chr2R_19882285_19882350 chr2R - chr2R_19882430_19882498 chr2R_19882443_19882498 chr2R_19882499_19882557;chr2R_19882351_19882429 100.00 NA 87.50 92.86 NA NA 100.00 90.91 100.00 NA NA 100.00 NA NA NA 85.71 NA 100.00 91.67 92.86 100.00 NA 100.00 NA NA 100.00 NA NA NA NA 91.67 NA NA 100.00 NA NA NA NA NA 100.00 NA 92.31 NA NA NA NA NA NA 90.00 NA 100.00 NA NA NA 90.91 NA NA 100.00 K intron_retention R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083522_8089393 chr2L_8083521_8083522;chr2L_8089393_8089394 chr2L_8083444_8083521;chr2L_8089394_8089493 65.04 66.67 50.00 41.18 43.75 64.00 53.93 53.33 46.15 72.73 33.33 51.25 42.42 51.22 41.67 58.33 65.38 68.75 53.85 39.44 52.63 95.65 89.66 85.71 76.47 82.61 94.44 78.95 77.78 80.95 52.38 58.33 67.74 50.85 90.91 82.61 55.56 77.78 77.78 67.65 59.26 58.33 57.58 76.19 50.00 66.67 90.91 70.73 53.73 81.25 84.62 72.22 66.67 NA 64.71 71.43 56.25 54.29 K intron_retention TMS1 chr3L + chr3L_16407079_16407137 chr3L_16407078_16407079;chr3L_16407137_16407138 chr3L_16406969_16407078;chr3L_16407138_16407321 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.05 0.44 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 K jcn_only_AD Ilp6,RI_chrX_2226173_2226308,I_chrX_2226173_2226571 chrX - chrX_2226173_2226376;chrX_2226173_2227352;chrX_2226173_2226308 chrX_2226173_2226571 chrX_2226073_2226172;chrX_2227353_2227719 0.00 0.00 0.00 1.06 0.00 3.64 1.03 0.00 0.00 3.70 1.85 0.00 0.00 0.00 0.00 0.81 3.39 0.00 1.37 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 3.57 7.32 1.67 2.63 4.08 0.00 1.64 0.00 2.04 0.82 0.00 0.00 4.76 1.79 0.00 0.00 4.35 0.00 2.82 1.23 7.14 0.00 1.16 1.83 2.17 0.00 0.00 0.00 0.00 0.88 3.03 K alternative_donor RpS18,CG8908,EI_chr2R_16151918_16151997,I_chr2R_16151918_16152036,I_chr2R_16151938_16152065,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151938_16151997;chr2R_16151942_16151997 chr2R_16151918_16151997 chr2R_16151998_16152066;chr2R_16151852_16151917 0.10 0.13 0.14 0.10 0.07 0.15 0.09 0.13 0.10 0.08 0.17 0.13 0.14 0.10 0.07 0.25 0.17 0.13 0.08 0.12 0.15 0.18 0.11 0.12 0.12 0.14 0.06 0.09 0.09 0.06 0.21 0.03 0.11 0.12 0.11 0.15 0.10 0.09 0.09 0.09 0.09 0.07 0.15 0.07 0.02 0.13 0.05 0.05 0.11 0.04 0.08 0.07 0.11 0.07 0.14 0.11 0.03 0.05 K alternative_acceptor Galpha49B,I_chr2R_8501587_8501648,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500390_8501648;chr2R_8500390_8501071 chr2R_8500390_8501759 chr2R_8500380_8500389;chr2R_8501760_8501850 0.00 0.00 0.00 4.35 NA 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 2.22 5.56 0.00 4.76 4.35 9.09 9.09 10.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 7.69 0.00 0.00 11.11 8.33 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 5.13 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 K intron_retention CG12207,I_chr3R_10115172_10115963,RE_chr3R_10124392_10124511 chr3R + chr3R_10115172_10116451 chr3R_10115171_10115172;chr3R_10116451_10116452 chr3R_10115072_10115171;chr3R_10116452_10116542 0.00 0.00 NA 0.00 NA NA NA 10.00 0.00 NA NA NA NA NA 7.14 10.53 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K alternative_acceptor Cap-H2 chr3R + chr3R_6589674_6589835;chr3R_6589674_6589871 chr3R_6589674_6589832 chr3R_6588751_6589673;chr3R_6589872_6590095 33.33 33.33 42.86 45.45 NA 28.57 22.22 35.71 25.00 NA NA 50.00 14.29 25.00 14.29 42.86 33.33 NA 57.14 20.00 42.86 NA 50.00 0.00 NA 14.29 30.00 42.86 NA NA 37.50 NA NA 23.08 NA NA NA NA 25.00 28.57 NA 35.29 NA NA NA NA NA NA 33.33 NA 33.33 NA NA NA 42.86 NA NA NA K intron_retention norpA,I_chrX_4219265_4219380 chrX + chrX_4254739_4255998 chrX_4254738_4254739;chrX_4255998_4255999 chrX_4254649_4254738;chrX_4255999_4256951 42.59 52.63 20.00 35.48 30.77 22.22 64.52 32.35 48.00 72.22 55.56 50.00 42.86 50.00 47.83 40.00 41.18 33.33 42.31 41.86 35.71 65.00 46.67 60.87 71.43 33.33 59.09 100.00 65.22 32.00 29.41 NA 43.75 40.00 37.04 17.65 78.57 36.36 29.41 33.33 44.00 47.92 27.78 48.15 22.22 35.29 31.25 47.62 56.76 44.44 62.50 59.09 35.71 50.00 34.78 33.33 47.62 24.24 K intron_retention spn-E,I_chr3R_11663703_11663759 chr3R + chr3R_11666905_11666993 chr3R_11666904_11666905;chr3R_11666993_11666994 chr3R_11666252_11666904;chr3R_11666994_11667127 0.00 NA 0.00 0.00 NA NA 0.00 0.00 2.94 NA NA 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA 5.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K multi_cassette par-1,I_chr2R_15359242_15360944,I_chr2R_15359251_15359544,I_chr2R_15359251_15360944,I_chr2R_15359658_15359771,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15359251_15360944 chr2R_15359251_15360323;chr2R_15360437_15360500;chr2R_15360670_15360944 chr2R_15360324_15360436;chr2R_15360501_15360669 chr2R_15359244_15359250;chr2R_15360945_15360953 100.00 98.67 100.00 96.34 100.00 100.00 100.00 98.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 98.47 99.22 100.00 100.00 100.00 99.02 98.15 100.00 98.77 100.00 100.00 99.07 100.00 100.00 100.00 100.00 98.96 99.24 99.10 97.92 99.13 97.87 100.00 98.46 100.00 100.00 100.00 100.00 100.00 99.17 98.15 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG7546 chr3L + chr3L_7508878_7508925;chr3L_7508878_7508967 chr3L_7508878_7508970 chr3L_7508741_7508877;chr3L_7508971_7509150 25.38 30.77 25.68 32.95 28.07 24.24 29.87 30.00 19.89 19.40 24.53 21.55 24.00 19.23 21.05 30.51 18.87 23.81 7.14 19.37 25.40 22.00 22.02 27.03 26.83 9.09 28.15 27.17 18.18 34.94 27.27 27.69 21.51 27.37 20.73 26.80 20.19 30.13 29.33 25.20 18.75 21.88 25.00 25.38 25.61 30.10 20.86 26.79 30.83 30.47 19.44 33.33 31.07 29.75 15.87 27.55 22.86 19.67 K intron_retention RpL15 chr3LHet + chr3LHet_2398053_2398127 chr3LHet_2398052_2398053;chr3LHet_2398127_2398128 chr3LHet_2398050_2398052;chr3LHet_2398128_2398454 99.21 96.61 99.23 99.81 99.32 99.15 98.11 98.86 99.24 100.00 99.41 99.69 99.21 99.48 98.79 99.32 99.44 98.18 100.00 99.43 99.41 98.55 96.77 100.00 100.00 99.30 98.89 100.00 98.06 98.95 99.66 95.96 100.00 99.64 100.00 97.47 99.21 98.41 99.11 98.47 98.84 99.39 99.32 95.16 99.09 99.07 99.11 99.05 98.73 99.22 98.77 97.87 100.00 92.86 99.39 97.64 98.37 100.00 K intron_retention su(s),chrX_531053_531420.0,chrX_531653_531971.0 chrX + chrX_530313_532365 chrX_530312_530313;chrX_532365_532366 chrX_529989_530312;chrX_532366_532753 9.82 NA NA NA NA NA 7.14 7.14 23.53 NA NA 15.38 NA NA NA 22.22 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA K intron_retention Rbf chrX - chrX_692176_692310 chrX_692175_692176;chrX_692310_692311 chrX_691795_692175;chrX_692311_693046 0.00 0.00 0.00 0.00 NA 5.00 0.00 0.00 0.00 0.00 NA 2.56 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD tou,RI_chr2R_7474644_7475275,I_chr2R_7479681_7480248,RI_chr2R_7479681_7486880,I_chr2R_7479681_7491857,I_chr2R_7504956_7505020 chr2R - chr2R_7479681_7503083 chr2R_7479681_7480463 chr2R_7479581_7479680;chr2R_7503084_7503231 16.34 17.24 22.22 20.90 NA 22.50 17.65 16.88 17.46 14.29 16.67 15.79 6.82 17.07 21.95 18.48 25.00 21.21 10.87 16.00 21.88 10.53 24.53 14.81 NA 23.08 18.75 NA 5.17 4.48 11.54 NA 4.76 13.43 7.69 11.76 9.09 9.09 15.62 13.75 4.00 26.87 35.14 18.42 NA 3.12 NA 5.88 26.83 NA 16.36 22.73 NA NA 16.33 NA NA 2.44 K intron_retention I_chr4_247410_247797,yellow-h,R_chr4_261460_261560,I_chr4_264634_265805 chr4 + chr4_250198_250536 chr4_250197_250198;chr4_250536_250537 chr4_249563_250197;chr4_250537_251021 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.70 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA 0.00 NA 2.94 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 0.00 NA NA K intron_retention Nurf-38 chr2R - chr2R_20447749_20447814 chr2R_20447748_20447749;chr2R_20447814_20447815 chr2R_20447353_20447748;chr2R_20447815_20447933 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Aats-lys chrX - chrX_9501601_9501661 chrX_9501600_9501601;chrX_9501661_9501662 chrX_9500653_9501600;chrX_9501662_9502325 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 1.20 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 K alternative_donor CaMKII,I_chr4_1069766_1069812,I_chr4_1071236_1071307,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1071236_1071968;chr4_1071236_1071884;chr4_1071236_1071813;chr4_1071236_1072054 chr4_1071236_1071319 chr4_1071136_1071235;chr4_1072055_1072059 100.00 100.00 93.75 81.08 88.89 100.00 96.97 91.18 95.00 100.00 100.00 96.67 100.00 100.00 92.31 95.00 100.00 100.00 95.00 92.59 90.91 100.00 92.31 100.00 100.00 100.00 100.00 100.00 88.89 100.00 91.67 100.00 100.00 90.62 100.00 100.00 100.00 100.00 100.00 93.75 100.00 92.86 93.33 100.00 87.50 100.00 100.00 90.48 92.31 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 96.00 K alternative_donor nmdyn-D7 chr3R + chr3R_5505776_5505995 chr3R_5505932_5505995 chr3R_5505996_5506162;chr3R_5505694_5505775 100.00 100.00 94.44 100.00 100.00 100.00 96.00 96.00 96.67 100.00 100.00 96.77 100.00 100.00 100.00 95.65 100.00 100.00 100.00 93.33 92.86 100.00 95.83 95.65 100.00 100.00 95.45 100.00 88.24 100.00 100.00 100.00 94.74 95.83 100.00 100.00 96.15 100.00 95.83 97.14 84.62 96.88 100.00 100.00 95.00 100.00 94.74 95.00 96.55 100.00 95.83 100.00 100.00 100.00 90.91 94.74 100.00 100.00 K intron_retention fs(1)h,I_chrX_7938425_7938871,I_chrX_7938425_7938878,I_chrX_7938449_7944184,I_chrX_7950171_7952371,I_chrX_7954192_7955240 chrX - chrX_7938425_7944184 chrX_7938424_7938425;chrX_7944184_7944185 chrX_7938366_7938424;chrX_7944185_7944284 14.71 14.58 26.83 23.33 25.93 25.71 22.45 24.19 20.65 6.82 21.43 19.10 18.52 29.03 39.39 29.09 24.14 32.14 34.21 21.43 26.67 10.53 5.21 6.94 12.20 36.11 9.62 5.26 15.25 10.17 25.00 15.38 10.75 32.39 5.56 10.00 8.20 9.80 8.82 7.69 10.42 19.15 33.33 10.64 14.00 9.30 2.08 17.82 19.35 4.35 2.44 5.71 6.98 4.35 20.00 5.71 8.33 14.71 K intron_retention CG2064 chr2R + chr2R_3554452_3554508 chr2R_3554451_3554452;chr2R_3554508_3554509 chr2R_3554192_3554451;chr2R_3554509_3554857 0.00 1.06 0.00 2.50 0.00 0.00 0.00 0.00 1.45 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 1.44 0.00 0.00 0.00 2.41 2.74 0.47 0.00 0.79 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.90 1.23 0.61 0.58 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N cassette shep,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5154702_5156066 chr3L_5154702_5155555;chr3L_5155644_5156066 chr3L_5155556_5155643 chr3L_5153808_5154701;chr3L_5156067_5156229 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 86.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG7337,I_chr2L_1910010_1910066,RI_chr2L_1911951_1913208,RI_chr2L_1912284_1913208,I_chr2L_1938620_1938887,I_chr2L_1942183_1942233 chr2L + chr2L_1912235_1913208;chr2L_1912284_1913208;chr2L_1911951_1913208 chr2L_1911870_1913208 chr2L_1913209_1913308;chr2L_1911851_1911869 35.00 NA NA NA NA NA 12.90 29.63 22.22 NA NA NA NA 35.00 33.33 44.44 NA NA NA 53.33 NA NA NA NA NA NA NA NA NA NA 62.50 NA NA 30.77 NA NA NA NA NA NA NA 46.15 NA NA NA NA NA NA 46.67 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG14814,I_chrX_1757739_1757803,I_chrX_1757755_1757801 chrX - chrX_1757739_1757801 chrX_1757755_1757801 chrX_1757802_1757901;chrX_1757655_1757738 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 3.70 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 3.85 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 K intron_retention CG4266,I_chr2R_17052549_17053657 chr2R - chr2R_17050657_17050870 chr2R_17050656_17050657;chr2R_17050870_17050871 chr2R_17049245_17050656;chr2R_17050871_17051200 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 2.08 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 4.17 0.00 4.44 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.81 0.00 1.75 1.82 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.93 K intron_retention ana2,MrgBP,CG8258 chr2R - chr2R_4786821_4786871 chr2R_4786820_4786821;chr2R_4786871_4786872 chr2R_4786228_4786820;chr2R_4786872_4787717 0.00 NA NA NA NA NA NA 6.67 0.00 NA NA 0.00 NA NA NA NA NA NA NA 4.55 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 10.53 NA NA NA NA NA 0.00 NA K intron_retention Cap-H2 chr3R + chr3R_6589674_6589835 chr3R_6589673_6589674;chr3R_6589835_6589836 chr3R_6588751_6589673;chr3R_6589836_6590095 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.52 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG31431 chr3R + chr3R_17696656_17697703;chr3R_17696581_17697703;chr3R_17696702_17697703 chr3R_17696730_17697703 chr3R_17697704_17697862;chr3R_17696406_17696580 89.02 91.84 83.33 88.52 90.15 90.60 84.33 91.01 86.07 90.91 88.12 88.19 94.24 86.91 86.87 88.51 89.06 84.13 87.83 90.32 96.75 88.89 82.22 86.76 93.64 89.52 88.39 93.67 67.86 81.82 88.73 87.67 90.48 91.09 87.50 94.64 92.50 90.67 88.73 85.71 87.76 89.26 86.09 94.90 95.12 86.01 91.35 89.81 91.25 82.00 86.83 90.71 94.44 97.01 90.21 93.58 88.57 89.02 K intron_retention CG2135 chr3R - chr3R_27595371_27595429 chr3R_27595370_27595371;chr3R_27595429_27595430 chr3R_27595072_27595370;chr3R_27595430_27595568 15.15 13.64 5.00 25.71 18.92 15.15 8.64 12.00 10.81 16.67 17.39 33.33 7.58 22.22 12.28 21.15 19.05 19.44 13.56 15.38 17.65 14.00 23.08 11.76 16.13 15.91 21.15 12.00 31.25 13.51 21.43 17.14 10.20 15.38 15.62 28.00 10.87 11.90 9.52 16.67 16.67 14.55 15.15 9.26 13.56 15.38 13.64 26.32 13.25 12.94 15.00 20.00 10.26 10.34 18.33 10.42 9.65 21.09 K jcn_only_AA sgg,I_chrX_2528059_2528637,I_chrX_2528131_2535622,RI_chrX_2528212_2535830,I_chrX_2528367_2535622,I_chrX_2528472_2535622,I_chrX_2529065_2563945,I_chrX_2536127_2563666,I_chrX_2563342_2563666,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2528059_2528859;chrX_2528059_2528868;chrX_2528059_2535622 chrX_2528059_2535830 chrX_2528052_2528058 17.86 13.64 22.22 19.57 NA NA 24.49 6.25 14.29 NA NA 17.86 3.45 16.13 11.11 15.69 NA 40.00 19.44 14.58 NA NA 22.58 31.82 NA 20.00 NA NA NA 30.00 11.76 NA 50.00 11.90 NA NA 20.00 NA NA 39.13 NA 15.91 10.71 NA NA NA NA NA 15.62 NA 25.00 22.73 NA NA 9.09 NA NA NA K jcn_only_AD CycD,I_chrX_15803256_15803313 chrX - chrX_15803256_15803563 chrX_15803256_15803452 chrX_15803156_15803255;chrX_15803564_15803677 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 4.55 0.00 0.00 0.00 0.00 K alternative_acceptor Mnt chrX + chrX_3593520_3593719 chrX_3593520_3593716 chrX_3593372_3593519;chrX_3593720_3593820 42.86 60.00 40.00 36.36 33.33 50.00 30.00 36.36 41.38 NA NA 42.31 NA NA 42.86 NA NA NA NA 40.91 30.77 31.58 46.67 35.71 45.45 NA NA NA NA 50.00 53.85 NA 47.62 41.67 NA NA 31.25 46.15 50.00 46.67 NA 41.67 NA 50.00 NA NA NA 41.18 50.00 NA 42.86 NA NA NA 50.00 NA NA 55.56 K jcn_only_AD gw,RI_chr4_679135_679703,I_chr4_679135_680299,RI_chr4_679135_680693,I_chr4_679135_681047,I_chr4_679135_681671 chr4 - chr4_679135_681128;chr4_679135_681206 chr4_679135_681054 chr4_679035_679134;chr4_681207_681208 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 98.36 97.67 100.00 100.00 98.78 96.77 NA 97.87 100.00 NA NA 100.00 NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 N jcn_only_AA Akap200,I_chr2L_8415846_8426873,I_chr2L_8417052_8426873,I_chr2L_8420065_8426872,I_chr2L_8426446_8426873 chr2L + chr2L_8420065_8426873 chr2L_8420065_8421966 chr2L_8419965_8420064;chr2L_8426874_8426972 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Npc2b,I_chr3R_9916602_9917530 chr3R + chr3R_9916602_9917530 chr3R_9916602_9917019;chr3R_9917124_9917530 chr3R_9917020_9917123 chr3R_9916502_9916601;chr3R_9917531_9917630 100.00 100.00 NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA NA NA NA NA 100.00 NA NA 85.71 100.00 NA NA 88.89 NA NA NA 100.00 NA NA NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA K intron_retention coro,I_chr2R_2754447_2755071 chr2R - chr2R_2751060_2751782 chr2R_2751059_2751060;chr2R_2751782_2751783 chr2R_2751039_2751059;chr2R_2751783_2752076 70.84 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA 91.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor l(1)G0196,I_chrX_21900456_21904601 chrX + chrX_21907939_21908943 chrX_21908018_21908943 chrX_21908944_21909468;chrX_21907441_21907938 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 K intron_retention Sh3beta,I_chr3L_7361085_7361784 chr3L - chr3L_7361085_7361989 chr3L_7361084_7361085;chr3L_7361989_7361990 chr3L_7360985_7361084;chr3L_7361990_7362230 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.39 0.00 0.51 0.54 0.00 0.00 0.00 0.00 0.35 0.00 0.07 0.00 0.17 0.00 0.00 0.60 0.90 0.00 0.00 0.00 0.00 0.14 0.00 0.37 0.00 0.00 0.00 0.00 0.24 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.11 0.00 K cassette Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24348983_24349501;chr3R_24348983_24349755 chr3R_24348983_24349248;chr3R_24349420_24349501,chr3R_24349420_24349755 chr3R_24349249_24349419 chr3R_24348417_24348982;chr3R_24349756_24349939 54.23 55.10 42.55 38.64 46.15 52.50 39.13 45.26 51.00 39.29 50.00 39.36 30.00 47.73 45.28 54.29 32.26 60.00 52.63 54.23 34.38 47.62 61.54 57.45 50.98 40.43 63.27 36.36 41.67 60.87 53.33 57.89 76.19 46.30 56.52 58.82 58.11 63.64 65.00 51.39 55.00 46.67 37.50 55.56 61.29 65.22 69.70 57.14 48.96 54.55 64.15 70.59 68.75 65.71 50.00 67.44 70.00 63.33 K alternative_donor CG31713,CREI_chr2L_9938511_9938564,RI_chr2L_9942818_9944294,I_chr2L_9944682_9947179 chr2L - chr2L_9938511_9938568 chr2L_9938511_9938564 chr2L_9938411_9938510;chr2L_9938569_9938664 2.56 6.67 7.69 0.00 NA NA 4.17 0.00 6.45 NA 0.00 0.00 0.00 0.00 0.00 3.85 7.69 4.76 3.85 2.56 NA NA 5.26 13.33 NA 0.00 0.00 NA NA 0.00 7.69 0.00 2.44 3.33 NA NA NA NA 0.00 2.44 0.00 2.38 0.00 0.00 3.12 0.00 0.00 6.06 3.85 23.08 5.88 NA 4.76 NA 3.45 0.00 4.65 2.99 K jcn_only_AA drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389400_9390195;chr2R_9389714_9390195;chr2R_9389597_9390195 chr2R_9389430_9390195 chr2R_9390196_9390251;chr2R_9389318_9389399 3.48 8.93 4.76 7.41 6.90 2.56 5.05 2.74 1.83 2.63 2.08 6.33 3.64 9.52 3.08 6.19 9.52 2.74 1.47 2.10 7.14 8.33 3.30 7.69 4.17 0.00 5.48 8.47 2.27 7.14 3.23 0.00 9.09 1.11 3.45 1.06 3.51 3.23 3.85 8.51 NA 4.08 5.56 1.72 0.00 7.27 1.28 3.33 6.00 1.69 1.49 5.66 0.00 1.39 5.56 5.36 3.00 2.04 K intron_retention CG4936 chr3R + chr3R_15859181_15859237 chr3R_15859180_15859181;chr3R_15859237_15859238 chr3R_15859046_15859180;chr3R_15859238_15859348 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG33969,I_chr3L_20390576_20390678 chr3L - chr3L_20386317_20386378 chr3L_20386326_20386378 chr3L_20386379_20386446;chr3L_20386251_20386316 84.62 92.50 75.76 80.49 76.92 83.78 84.85 80.23 83.49 89.29 82.50 88.33 89.19 80.49 84.62 81.63 86.49 83.72 82.69 91.01 80.00 81.67 90.79 87.30 77.78 80.56 80.00 86.96 82.61 80.36 86.81 84.78 84.15 81.97 92.31 91.49 85.29 84.38 79.63 85.71 83.78 87.84 91.43 88.68 87.27 82.72 84.62 82.93 82.61 86.54 85.94 82.61 96.30 90.24 88.24 79.25 95.45 85.48 K jcn_only_AD CG9603,I_chr3R_4165812_4166062 chr3R - chr3R_4165812_4166151 chr3R_4165812_4166149 chr3R_4165712_4165811;chr3R_4166152_4166162 100.00 100.00 99.83 100.00 100.00 99.79 100.00 99.91 100.00 100.00 100.00 100.00 100.00 100.00 99.84 100.00 100.00 99.79 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.88 99.77 100.00 100.00 99.81 100.00 100.00 100.00 100.00 100.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2813977;chr2R_2814097_2814174;chr2R_2814327_2814894;chr2R_2815654_2816013;chr2R_2816342_2816577;chr2R_2816779_2817354;chr2R_2817604_2817753 chr2R_2813978_2814096;chr2R_2814175_2814326;chr2R_2814895_2815653;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817355_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,I_chr2R_15350149_15350210,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350149_15350210 chr2R_15350148_15350149;chr2R_15350210_15350211 chr2R_15350068_15350148;chr2R_15350211_15350284 100.00 100.00 87.50 100.00 NA 88.89 100.00 100.00 100.00 NA 100.00 100.00 NA 88.89 100.00 100.00 88.89 NA 100.00 100.00 NA 92.31 92.86 100.00 NA NA 100.00 NA 100.00 100.00 90.91 NA NA 100.00 100.00 91.67 100.00 NA NA 92.31 NA 100.00 100.00 NA NA NA NA 88.89 94.74 100.00 92.31 NA 100.00 NA 100.00 NA 100.00 NA K alternative_acceptor CG12567,I_chr2LHet_21570_31874 chr2LHet - chr2LHet_21374_21435 chr2LHet_21384_21435 chr2LHet_21436_21569;chr2LHet_21308_21373 72.22 72.41 78.38 63.04 66.67 67.86 59.42 70.69 74.63 76.47 59.09 70.69 85.19 77.42 82.93 73.13 72.41 78.12 72.92 73.47 73.91 72.22 73.91 69.57 66.67 63.89 80.00 100.00 76.92 69.57 63.83 73.33 47.06 71.21 75.00 60.87 60.00 60.87 66.67 71.05 71.43 78.57 69.44 76.47 63.64 57.14 76.47 77.78 80.56 82.61 75.00 70.97 72.22 66.67 60.47 64.00 86.96 77.27 N jcn_only_AA CG42354,CG42353 chrX - chrX_15989427_15989490 chrX_15989430_15989490 chrX_15989491_15989723;chrX_15989002_15989426 15.79 0.00 8.70 21.15 25.88 15.79 20.25 11.89 20.19 18.60 24.30 14.94 17.78 13.19 14.75 19.58 0.00 15.97 12.07 16.67 17.53 20.45 15.38 0.00 0.00 13.10 17.89 17.17 24.18 13.48 20.34 19.30 14.62 17.68 14.94 15.05 0.00 16.28 17.60 15.83 14.67 21.20 23.19 15.05 15.49 13.92 19.05 15.89 14.77 0.00 24.30 12.50 0.00 0.00 20.69 18.03 13.79 14.85 K intron_retention Pur-alpha,I_chr4_581447_585166 chr4 + chr4_580927_580974 chr4_580926_580927;chr4_580974_580975 chr4_580745_580926;chr4_580975_581033 12.67 NA NA NA NA NA NA 14.81 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA K intron_retention Arf102F,RI_chr4_1144958_1145393,I_chr4_1152220_1152710,I_chr4_1152585_1152687 chr4 + chr4_1145325_1145393 chr4_1145324_1145325;chr4_1145393_1145394 chr4_1145062_1145324;chr4_1145394_1145493 0.00 0.00 0.79 1.28 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.43 0.91 0.00 0.61 0.96 1.72 0.00 0.72 0.00 0.00 1.72 0.00 0.00 0.00 0.00 1.74 2.94 1.52 0.00 1.23 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.40 2.15 0.00 0.00 0.00 0.00 0.81 0.36 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_donor Sr-CIV,F_chr2L_3528916_3528977 chr2L - chr2L_3523673_3523752 chr2L_3523673_3523748 chr2L_3523144_3523672;chr2L_3523753_3524105 0.00 NA 3.23 0.00 0.00 0.00 0.00 0.00 4.94 NA 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA N multi_cassette CG42348,I_chr3L_20149990_20151579 chr3L - chr3L_20148379_20151579 chr3L_20148379_20148637;chr3L_20148760_20148832;chr3L_20148928_20149000;chr3L_20149099_20149779;chr3L_20150323_20151579 chr3L_20148638_20148759;chr3L_20148833_20148927;chr3L_20149001_20149098;chr3L_20149780_20150322 chr3L_20148001_20148378;chr3L_20151580_20151679 100.00 100.00 100.00 42.11 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 52.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 56.52 100.00 100.00 64.00 100.00 100.00 68.97 100.00 100.00 100.00 100.00 41.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention RI_chrX_1773382_1773444,trr,I_chrX_1793073_1794406,RI_chrX_1795648_1795745,I_chrX_1798310_1798525 chrX - chrX_1783328_1783390 chrX_1783327_1783328;chrX_1783390_1783391 chrX_1783044_1783327;chrX_1783391_1783885 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K intron_retention CG5535 chr3L - chr3L_17847808_17849745 chr3L_17847807_17847808;chr3L_17849745_17849746 chr3L_17847440_17847807;chr3L_17849746_17849932 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.67 0.00 0.96 0.00 0.00 0.00 0.71 0.00 0.00 0.75 0.89 3.03 1.06 0.00 0.00 0.00 0.00 0.67 1.61 1.22 0.00 1.15 2.61 0.89 1.43 0.00 0.89 0.00 0.00 0.00 0.87 1.23 0.00 0.00 0.52 0.00 0.93 0.00 1.62 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 K intron_retention CG4433 chr3R - chr3R_15845041_15845186 chr3R_15845040_15845041;chr3R_15845186_15845187 chr3R_15844947_15845040;chr3R_15845187_15845477 4.35 6.06 6.90 10.00 6.52 6.12 7.81 5.80 3.47 0.00 5.13 8.54 5.26 0.00 3.77 4.48 6.82 0.00 6.90 6.98 6.67 11.59 4.35 4.11 15.56 6.56 2.02 3.28 16.22 1.72 0.00 5.88 0.00 12.31 5.26 18.37 3.70 3.12 0.00 2.50 6.45 4.84 0.00 2.99 2.33 2.78 6.49 0.00 3.96 2.56 7.61 3.92 0.00 3.12 5.41 1.37 1.25 2.86 K alternative_donor CG7033,I_chrX_8985376_8985442 chrX + chrX_8985211_8985442 chrX_8985376_8985442 chrX_8985443_8985542;chrX_8984521_8985210 0.24 0.00 0.45 0.79 0.24 0.00 1.06 0.20 0.54 0.21 0.47 0.40 0.34 0.29 0.22 0.48 0.64 0.41 0.91 0.41 0.24 0.43 0.21 0.11 0.00 0.53 0.00 0.00 0.13 0.29 0.25 0.18 0.13 0.58 0.00 0.00 0.10 0.12 0.20 0.49 0.12 0.27 0.29 0.00 0.32 0.21 0.24 0.32 0.46 0.11 0.00 0.21 0.17 0.00 0.43 0.24 0.13 0.19 K alternative_donor MED26,I_chr4_807836_808040,I_chr4_807836_808089 chr4 - chr4_807836_808077;chr4_807836_808006 chr4_807836_808040 chr4_807736_807835;chr4_808078_808140 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.67 4.17 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.99 0.00 0.00 NA 0.00 NA 0.00 0.00 1.85 0.00 0.00 NA 2.00 0.00 0.00 1.35 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 K alternative_acceptor CycT,I_chr3L_17548631_17550687 chr3L - chr3L_17545774_17545844 chr3L_17545786_17545844 chr3L_17545845_17546322;chr3L_17545613_17545773 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 K cassette CrebB-17A,I_chrX_18261213_18269281,I_chrX_18265640_18266060,I_chrX_18265982_18266063 chrX + chrX_18267489_18269875 chrX_18267489_18269281;chrX_18269420_18269875 chrX_18269282_18269419 chrX_18267320_18267488;chrX_18269876_18270084 59.65 60.00 66.00 50.00 52.50 55.77 43.14 59.65 63.48 56.00 40.00 84.62 65.62 61.29 56.67 61.70 34.21 57.14 63.64 56.93 48.89 53.93 62.14 65.52 63.79 44.68 48.61 22.03 58.23 53.26 59.68 56.25 69.88 57.97 51.92 55.81 65.32 64.56 60.53 60.61 60.47 57.81 65.71 61.54 49.41 63.41 58.90 65.00 58.76 53.85 64.10 70.83 74.36 50.67 46.43 62.50 64.13 72.50 K intron_retention su(r),I_chrX_9094230_9095181 chrX - chrX_9091244_9091301 chrX_9091243_9091244;chrX_9091301_9091302 chrX_9091086_9091243;chrX_9091302_9094106 0.70 0.00 0.84 1.15 1.05 0.00 1.58 1.53 1.15 0.00 1.19 0.60 0.00 0.56 1.67 0.71 0.65 0.00 2.39 0.95 1.08 1.87 0.33 0.00 0.00 1.01 2.63 4.52 1.69 0.00 0.45 0.00 0.82 0.70 0.00 1.55 0.00 0.00 0.30 0.93 0.38 1.03 1.32 0.00 0.00 0.78 0.35 0.96 0.82 1.76 0.00 0.00 0.00 0.69 0.94 0.00 0.79 0.70 K alternative_donor CG10165 chr2L - chr2L_19528997_19530089 chr2L_19528997_19529991 chr2L_19528771_19528996;chr2L_19530090_19530189 91.67 83.33 NA 85.71 NA NA NA NA 87.50 NA NA 85.71 NA NA NA NA NA 85.71 NA 100.00 NA 100.00 93.33 88.89 100.00 NA 71.43 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 88.89 100.00 100.00 92.31 100.00 NA 88.89 NA NA 87.50 83.33 NA 87.50 100.00 83.33 91.67 NA 100.00 87.50 87.50 NA 75.00 100.00 K jcn_only_AD CG6406 chr2R - chr2R_13624539_13624600 chr2R_13624539_13624594 chr2R_13623844_13624538;chr2R_13624601_13624729 46.51 34.38 53.33 51.72 64.29 60.61 56.45 55.10 55.07 43.18 44.74 42.35 26.67 39.02 57.78 54.10 NA 58.62 40.00 46.15 63.89 51.81 38.32 41.54 37.93 52.17 44.59 47.06 44.62 52.56 46.51 58.70 52.11 44.26 50.88 52.70 38.46 33.85 41.77 46.39 46.51 45.45 50.00 50.54 45.65 47.95 32.86 38.10 56.58 50.85 43.42 27.27 37.88 49.25 47.73 44.57 45.83 64.41 K intron_retention CG4290,RI_chrX_1954878_1955077,I_chrX_1962457_1964222 chrX - chrX_1952299_1952353 chrX_1952298_1952299;chrX_1952353_1952354 chrX_1952017_1952298;chrX_1952354_1953451 21.43 NA NA NA NA NA NA NA 21.43 NA NA NA NA NA NA NA NA NA NA 25.00 NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA Ncc69,I_chr3L_12364701_12364860 chr3L - chr3L_12364701_12364860 chr3L_12364704_12364860 chr3L_12364861_12364960;chr3L_12364644_12364700 100.00 98.46 100.00 98.41 97.44 98.08 97.62 100.00 99.08 100.00 100.00 99.28 97.44 100.00 98.46 98.97 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 95.56 100.00 100.00 100.00 96.43 97.10 100.00 98.77 100.00 100.00 98.57 100.00 96.72 100.00 100.00 100.00 96.67 100.00 99.04 100.00 95.35 100.00 100.00 95.12 98.78 100.00 97.14 100.00 100.00 100.00 100.00 99.24 K alternative_donor CG40228,noncoding_14406,RI_chr3LHet_2190419_2190470 chr3LHet - chr3LHet_2190419_2190556;chr3LHet_2190419_2190563;chr3LHet_2190419_2190548;chr3LHet_2190419_2190470 chr3LHet_2190419_2190561 chr3LHet_2190319_2190418;chr3LHet_2190564_2190570 20.46 13.89 18.18 22.37 10.00 21.43 13.43 21.18 16.67 NA 18.18 20.63 12.50 11.11 10.71 20.77 7.14 19.23 19.57 29.41 20.00 25.00 12.50 21.43 27.78 20.59 20.00 21.43 13.64 26.67 20.45 23.08 16.67 18.52 20.93 26.47 15.38 26.67 19.05 16.28 26.92 15.69 23.53 23.33 22.86 20.48 11.43 23.26 20.95 26.19 14.89 22.22 15.38 23.33 18.42 21.95 16.67 25.00 K intron_retention RhoGAPp190,I_chrX_17544272_17544863,I_chrX_17546225_17546531 chrX - chrX_17538212_17540552 chrX_17538211_17538212;chrX_17540552_17540553 chrX_17538111_17538211;chrX_17540553_17540618 2.68 0.00 3.33 4.00 0.00 0.00 18.52 0.00 0.00 0.00 0.00 15.15 11.11 0.00 8.33 2.86 0.00 0.00 NA 4.88 0.00 NA 7.14 4.76 NA 0.00 NA NA NA NA 6.90 NA 3.85 7.89 10.53 0.00 6.90 7.69 0.00 8.33 0.00 2.50 0.00 0.00 NA NA 0.00 3.70 9.09 0.00 NA NA NA NA 6.25 NA NA NA K intron_retention Irbp,Ranbp9 chr3R + chr3R_7239755_7239812 chr3R_7239754_7239755;chr3R_7239812_7239813 chr3R_7239336_7239754;chr3R_7239813_7240364 0.00 0.00 0.00 1.92 0.00 0.00 0.00 1.98 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 1.80 0.00 0.00 0.00 0.00 2.19 0.56 0.00 0.00 0.00 0.96 0.00 0.00 1.03 0.00 1.82 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 K intron_retention mmd chrX - chrX_15843011_15843552 chrX_15843010_15843011;chrX_15843552_15843553 chrX_15842400_15843010;chrX_15843553_15843849 39.29 NA NA NA NA NA 41.67 42.86 39.29 NA NA 88.89 NA NA 31.58 NA NA 30.77 58.33 44.44 NA NA NA NA NA NA NA NA NA NA NA NA NA 19.05 NA NA NA NA 30.77 NA NA 32.00 NA NA NA NA NA NA 39.29 NA 30.77 NA NA NA 50.00 NA NA NA K alternative_last_exon CG8165,CG8176,I_chr3R_5348614_5348964 chr3R + chr3R_5341890_5346774 chr3R_5341890_5343982 chr3R_5346775_5347072 chr3R_5343983_5346660 chr3R_5341790_5341889 30.77 31.73 28.91 19.25 33.71 31.73 14.94 24.20 26.40 35.29 24.18 24.14 21.60 27.34 33.86 21.85 23.81 28.85 24.84 29.37 24.47 47.37 27.27 34.00 26.03 30.77 30.33 59.32 34.38 32.10 28.48 46.67 51.02 24.48 27.06 26.58 36.26 32.05 41.76 29.79 39.58 29.08 24.17 31.48 58.00 40.00 41.79 31.37 28.35 40.00 33.61 25.00 40.32 44.68 28.66 40.58 45.88 42.11 K jcn_only_AD CG4572,FI_chr3R_15689914_15690042 chr3R - chr3R_15689914_15690042;chr3R_15689914_15689997 chr3R_15689914_15690046 chr3R_15689814_15689913;chr3R_15690047_15690114 91.58 83.58 92.31 93.94 100.00 87.65 86.63 96.18 91.89 96.00 93.83 87.22 96.70 85.90 90.68 91.43 92.71 89.39 95.15 95.08 95.65 81.08 91.58 94.87 96.43 94.03 86.67 88.00 91.30 85.19 91.46 93.55 90.00 91.67 93.94 NA 85.92 88.46 94.25 92.00 NA 92.93 95.71 95.24 92.45 88.64 87.88 96.15 89.13 92.41 90.91 89.58 83.33 86.96 92.11 88.89 87.61 87.50 K multi_cassette DCAP,E_chr2R_6159586_6174578,I_chr2R_6162362_6166803,I_chr2R_6163353_6166716,I_chr2R_6163353_6166727,I_chr2R_6164310_6172914,I_chr2R_6172307_6179999,I_chr2R_6178643_6181126,RI_chr2R_6183553_6192101,I_chr2R_6188094_6192101 chr2R + chr2R_6159586_6182116 chr2R_6159586_6179999;chr2R_6180378_6180845;chr2R_6180945_6181126;chr2R_6181267_6181365;chr2R_6181439_6181654;chr2R_6181688_6182116 chr2R_6180000_6180377;chr2R_6180846_6180944;chr2R_6181127_6181266;chr2R_6181366_6181438;chr2R_6181655_6181687 chr2R_6159486_6159585;chr2R_6182117_6182270 100.00 87.50 100.00 100.00 100.00 83.33 80.00 88.89 100.00 100.00 100.00 100.00 80.00 100.00 71.43 100.00 100.00 80.00 75.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 80.00 33.33 100.00 85.71 100.00 100.00 75.00 88.89 100.00 100.00 88.89 100.00 88.89 88.89 100.00 92.31 66.67 100.00 100.00 100.00 100.00 100.00 91.67 85.71 100.00 75.00 100.00 80.00 90.00 100.00 100.00 100.00 K intron_retention None chrU + chrU_1178980_1179142 chrU_1178979_1178980;chrU_1179142_1179143 98.68 99.19 100.00 94.12 98.96 98.18 99.56 99.60 98.73 100.00 97.37 98.64 99.25 98.56 99.27 98.69 97.16 97.92 97.66 99.55 98.84 92.68 100.00 99.18 98.68 99.09 100.00 100.00 98.75 98.77 98.07 98.28 97.30 97.97 98.48 98.41 99.10 97.73 99.07 95.68 98.11 97.50 97.69 99.51 98.21 95.10 100.00 95.51 98.92 96.25 99.12 99.15 98.46 100.00 98.17 98.02 99.31 96.23 K intron_retention Cg25C chr2L + chr2L_5032375_5032499 chr2L_5032374_5032375;chr2L_5032499_5032500 chr2L_5031878_5032374;chr2L_5032500_5033950 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA ssp4,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13414489_13414718;chr2R_13413922_13414718;chr2R_13413823_13414718;chr2R_13414486_13414718 chr2R_13413919_13414718 chr2R_13414719_13414817 0.00 0.00 0.00 0.00 1.01 0.00 0.58 0.00 0.00 0.79 1.22 0.91 1.01 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 1.16 2.13 1.05 0.00 0.00 0.00 2.67 0.00 0.29 0.00 0.00 2.47 1.00 0.00 0.58 1.53 0.53 0.46 1.37 0.00 0.00 0.38 1.54 0.69 0.00 0.00 0.00 1.09 3.53 0.00 0.65 0.99 0.00 0.62 K jcn_only_AA CG4853,CG4866 chr2R + chr2R_13403035_13403104 chr2R_13403035_13403089 chr2R_13402085_13403034;chr2R_13403105_13403827 98.00 98.67 100.00 98.70 100.00 98.25 98.92 98.77 97.33 92.00 93.75 99.05 96.83 97.92 100.00 97.40 98.25 100.00 98.31 96.90 97.62 98.81 100.00 98.00 93.55 95.95 96.30 100.00 100.00 98.41 97.30 100.00 97.96 98.13 97.33 94.44 95.41 97.75 98.10 100.00 97.14 97.62 97.96 100.00 100.00 96.08 98.70 92.31 96.39 96.49 95.96 95.24 100.00 98.41 93.90 100.00 98.53 96.97 K alternative_last_exon Mlf,noncoding_7111,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824089_11825183 chr2R_11824832_11825183 chr2R_11822303_11824088 chr2R_11824187_11824831 chr2R_11825184_11825384 97.80 97.67 95.00 99.58 96.97 96.00 98.00 97.01 97.77 97.83 94.29 98.08 98.08 98.41 97.06 99.26 98.21 97.30 98.36 98.62 97.50 96.18 97.64 97.35 97.22 97.30 98.02 99.17 98.78 97.50 96.61 98.80 99.13 96.51 97.01 99.17 97.90 97.80 97.83 97.99 98.44 96.77 97.78 98.06 99.36 98.26 97.83 97.78 98.28 97.00 97.87 96.36 96.20 97.67 97.33 97.80 98.17 97.89 K multi_cassette CG30460,F_chr2R_12957263_12957403 chr2R - chr2R_12957263_12959231 chr2R_12957263_12957403;chr2R_12958182_12958624;chr2R_12959011_12959231 chr2R_12957404_12958181;chr2R_12958625_12959010 chr2R_12957163_12957262;chr2R_12959232_12959360 12.50 NA NA NA NA NA 12.50 NA 8.33 NA NA NA NA NA NA NA NA NA NA NA NA 8.33 12.50 NA NA NA NA 20.00 20.00 NA NA NA 12.50 NA NA NA NA NA NA 12.50 NA 0.00 NA NA NA NA NA NA 11.11 12.50 NA NA NA NA NA NA NA NA K jcn_only_AD mld chr3R + chr3R_20415112_20416293 chr3R_20415155_20416293 chr3R_20416294_20417143;chr3R_20415078_20415111 83.72 NA NA 70.00 NA NA NA NA 83.72 NA NA NA NA NA NA NA NA NA 66.67 90.91 NA NA NA NA NA NA NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA 65.22 NA NA NA NA NA NA 92.00 NA NA NA NA NA NA NA NA NA K intron_retention Myo31DF,I_chr2L_10506249_10506683,I_chr2L_10506446_10506542 chr2L - chr2L_10494368_10494427 chr2L_10494367_10494368;chr2L_10494427_10494428 chr2L_10494288_10494367;chr2L_10494428_10494811 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.30 0.20 0.00 0.00 0.67 0.00 0.00 0.00 0.71 0.50 0.00 0.00 0.57 0.00 0.00 0.72 1.05 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.26 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention lkb1 chr3R + chr3R_9504789_9504862 chr3R_9504788_9504789;chr3R_9504862_9504863 chr3R_9504472_9504788;chr3R_9504863_9505152 95.91 95.00 100.00 100.00 93.33 95.00 96.30 96.97 100.00 NA 91.67 97.50 95.45 87.50 95.24 96.97 92.31 93.75 95.45 96.97 100.00 100.00 100.00 95.45 93.75 95.45 95.83 100.00 94.74 93.33 100.00 93.33 95.45 95.83 100.00 100.00 100.00 92.31 95.65 100.00 90.48 97.14 100.00 93.75 95.83 97.14 95.00 95.00 97.56 94.12 96.00 100.00 100.00 100.00 100.00 100.00 97.06 95.24 K jcn_only_AD CG5594,CG2812 chr2R + chr2R_19810102_19810163 chr2R_19810105_19810163 chr2R_19810164_19810379;chr2R_19809915_19810101 0.00 0.00 0.64 0.00 0.00 0.00 1.07 0.00 0.44 0.00 1.08 0.82 0.00 0.71 0.00 0.00 0.00 0.78 0.00 0.57 0.00 0.00 0.37 0.49 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.63 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor F_chr3RHet_1879085_1900358,Alg-2 chr3RHet - chr3RHet_1898928_1898983;chr3RHet_1898895_1898983;chr3RHet_1898919_1898983 chr3RHet_1898930_1898983 chr3RHet_1898984_1899090;chr3RHet_1898558_1898894 92.59 95.65 83.33 93.44 93.75 93.94 94.83 90.41 88.71 100.00 94.44 86.76 87.88 91.43 87.50 89.61 90.00 96.15 91.30 94.05 95.45 100.00 86.36 76.00 82.35 86.11 100.00 81.25 90.00 92.31 86.36 100.00 100.00 89.06 88.89 94.12 78.57 90.00 95.00 92.59 82.35 93.75 95.65 88.24 70.59 96.43 96.15 94.12 87.50 95.83 95.65 79.17 94.12 95.00 87.04 96.43 94.12 96.77 K alternative_donor vlc chr2R + chr2R_1589953_1590371;chr2R_1589894_1590371;chr2R_1589799_1590371;chr2R_1589805_1590371;chr2R_1590318_1590371;chr2R_1589807_1590371;chr2R_1590294_1590371;chr2R_1589722_1590371 chr2R_1589693_1590371 chr2R_1590372_1590451;chr2R_1589612_1589692 5.00 5.88 7.69 6.06 0.00 12.00 3.64 4.55 5.06 18.75 3.85 5.33 2.44 4.65 5.71 1.43 6.45 5.00 4.17 0.00 0.00 5.88 6.82 2.86 4.55 7.89 10.53 7.69 7.14 4.17 8.70 0.00 4.35 6.33 0.00 0.00 7.41 10.71 0.00 2.63 15.38 8.11 7.89 13.33 8.33 4.76 0.00 5.00 7.32 4.00 2.08 3.70 11.76 0.00 3.70 4.35 11.11 5.26 K jcn_only_AA alpha-Cat,I_chr3L_23319053_23319787,I_chr3L_23319057_23319748,I_chr3L_23319861_23321813,I_chr3L_23327841_23328002 chr3L - chr3L_23319053_23319787 chr3L_23319057_23319787 chr3L_23319788_23319848;chr3L_23318989_23319052 100.00 99.05 99.19 100.00 98.46 100.00 100.00 100.00 100.00 100.00 98.89 99.47 100.00 98.89 100.00 98.59 100.00 100.00 100.00 99.53 100.00 100.00 100.00 99.19 100.00 100.00 100.00 98.51 97.78 98.78 99.32 100.00 100.00 99.52 100.00 100.00 100.00 100.00 98.46 99.08 100.00 98.21 100.00 98.44 100.00 98.02 100.00 98.11 99.48 98.69 99.22 98.98 100.00 98.88 98.61 100.00 98.71 100.00 K intron_retention spz chr3R - chr3R_22892388_22892450 chr3R_22892387_22892388;chr3R_22892450_22892451 chr3R_22892330_22892387;chr3R_22892451_22892606 87.84 87.84 87.04 98.81 91.11 97.96 98.89 90.32 90.38 78.95 90.91 90.61 95.38 86.89 90.00 84.42 86.54 82.86 91.78 90.48 100.00 85.71 90.48 82.05 100.00 99.00 83.87 73.68 84.62 81.40 88.71 90.00 82.43 93.14 88.52 98.95 84.42 77.05 90.43 81.75 95.65 90.78 92.16 81.51 78.46 87.21 86.44 84.81 86.62 77.78 88.46 87.04 80.28 92.86 90.53 83.10 78.75 81.25 K jcn_only_AA Prp8,I_chr2R_8048796_8048851,I_chr2R_8050245_8050389 chr2R - chr2R_8048572_8048851 chr2R_8048796_8048851 chr2R_8048852_8048951;chr2R_8048472_8048571 1.12 0.00 0.00 0.44 1.11 1.33 2.38 0.48 2.25 0.00 0.00 0.98 0.73 0.82 1.79 0.97 0.00 1.11 1.41 1.63 4.26 1.52 0.00 0.70 0.96 1.89 0.57 4.35 2.11 0.00 3.00 1.82 2.39 2.01 1.25 0.00 0.00 0.84 2.92 3.41 0.00 1.47 0.00 1.12 0.00 1.61 2.13 1.21 2.07 1.52 0.00 1.01 0.00 3.03 0.00 6.52 2.08 4.55 K multi_cassette shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9785143,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9770053_9787870 chr2R_9770053_9781634;chr2R_9782098_9782343;chr2R_9782475_9786954;chr2R_9787177_9787870 chr2R_9781635_9782097;chr2R_9782344_9782474;chr2R_9786955_9787176 chr2R_9769906_9770052;chr2R_9787871_9787923 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.57 99.24 100.00 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 94.67 98.46 100.00 100.00 100.00 100.00 100.00 96.88 97.62 100.00 100.00 97.73 98.75 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Tao-1 chrX - chrX_19465927_19465998 chrX_19465926_19465927;chrX_19465998_19465999 chrX_19465808_19465926;chrX_19465999_19466220 0.98 0.00 0.00 1.46 0.00 1.90 12.38 1.84 1.30 0.00 0.00 0.56 2.41 0.00 0.00 0.00 0.00 1.15 1.14 1.56 0.00 3.50 2.23 0.00 5.31 8.26 2.88 1.67 4.85 0.00 0.00 0.00 1.87 1.18 0.00 18.92 2.08 0.00 1.96 0.51 6.10 0.92 0.00 0.76 0.00 0.00 0.00 0.98 1.35 1.57 3.05 1.89 0.00 2.74 2.16 0.87 0.00 0.00 N alternative_donor CG9339,RE_chr2L_20903555_20916904,I_chr2L_20903560_20918638,I_chr2L_20922613_20922685 chr2L - chr2L_20917121_20918093;chr2L_20917121_20918638 chr2L_20917121_20918798 chr2L_20916905_20917120;chr2L_20918799_20918888 46.15 50.00 47.06 35.29 44.44 38.46 33.33 25.71 42.86 42.86 54.55 44.44 57.14 50.00 38.89 44.44 23.08 33.33 39.39 62.16 22.22 60.00 57.14 42.86 44.44 30.77 33.33 40.00 58.33 56.25 45.83 55.56 58.33 34.38 50.00 43.75 61.54 80.00 33.33 48.00 33.33 34.62 25.00 71.43 50.00 60.00 72.73 50.00 25.71 57.14 46.15 68.75 85.71 75.00 12.50 55.56 50.00 58.33 K alternative_acceptor TORC chr3L - chr3L_17657734_17661206 chr3L_17657747_17661206 chr3L_17661207_17662333;chr3L_17652985_17657733 100.00 100.00 100.00 100.00 NA 100.00 91.67 94.12 95.00 100.00 100.00 94.74 NA 100.00 87.50 100.00 90.91 NA 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA 87.50 100.00 100.00 100.00 100.00 100.00 94.74 NA NA 100.00 100.00 NA 100.00 100.00 95.45 88.89 100.00 NA NA NA 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 K alternative_donor CSN5 chr3R + chr3R_12296792_12296850;chr3R_12296786_12296850 chr3R_12296683_12296850 chr3R_12296851_12297070;chr3R_12296215_12296682 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr2R_7778750_7781059,I_chr2R_7778971_7781059,Ef1alpha48D,I_chr2R_7779690_7780997,I_chr2R_7779690_7781065,I_chr2R_7779690_7783075,I_chr2R_7779719_7781059,I_chr2R_7779813_7781059,I_chr2R_7779892_7781059,EF_chr2R_7779896_7781065,I_chr2R_7780542_7781059,I_chr2R_7780580_7781059,I_chr2R_7780840_7781059,I_chr2R_7780877_7781059,RI_chr2R_7781135_7783075 chr2R + chr2R_7780877_7781059 chr2R_7780876_7780877;chr2R_7781059_7781060 chr2R_7780777_7780876;chr2R_7781060_7781097 95.90 94.74 100.00 96.15 90.00 91.67 100.00 95.00 97.22 100.00 91.67 88.89 NA 100.00 100.00 100.00 100.00 92.31 94.12 97.44 91.67 100.00 87.50 86.36 92.31 92.31 100.00 99.44 95.65 94.12 90.00 92.86 92.31 100.00 100.00 95.45 96.55 100.00 96.15 96.15 90.00 96.67 92.86 100.00 94.12 100.00 100.00 93.75 91.18 92.00 100.00 100.00 95.24 100.00 93.75 100.00 96.55 95.65 K alternative_acceptor CG9948 chr3L + chr3L_6949263_6949332;chr3L_6949263_6949310 chr3L_6949263_6949314 chr3L_6949194_6949262;chr3L_6949333_6949497 38.46 38.46 30.77 55.26 38.46 36.84 32.35 50.00 41.03 NA 43.75 25.81 35.29 25.00 44.00 24.24 31.25 35.29 34.48 33.33 33.33 42.11 NA 47.06 25.00 36.36 NA NA NA 57.14 45.45 NA NA 41.67 42.86 30.00 33.33 45.45 NA 24.00 36.36 47.62 35.71 50.00 33.33 54.17 41.18 41.18 25.00 42.11 41.67 50.00 38.10 41.67 36.00 60.87 25.00 50.00 K cassette dnt chr2L - chr2L_19339277_19339769 chr2L_19339277_19339354;chr2L_19339652_19339769 chr2L_19339355_19339651 chr2L_19338678_19339276;chr2L_19339770_19340934 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CaMKII,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1068202_1068260 chr4_1068201_1068202;chr4_1068260_1068261 chr4_1068079_1068201;chr4_1068261_1068355 0.00 0.00 7.32 2.44 0.00 0.00 8.93 1.32 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 8.70 0.00 7.41 5.00 NA 0.00 1.89 0.00 0.00 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.06 0.00 NA 0.00 0.00 0.00 2.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rip11,E_chrX_18532733_18533695,RI_chrX_18530353_18530870,RI_chrX_18530742_18530870,RI_chrX_18544139_18544185 chrX - chrX_18530353_18531445 chrX_18530352_18530353;chrX_18531445_18531446 chrX_18530253_18530352;chrX_18531446_18531606 24.86 19.35 38.33 32.14 10.17 18.62 17.77 20.25 16.79 27.42 33.33 56.30 40.00 30.14 26.88 50.98 16.47 26.74 21.05 27.06 36.17 40.62 27.16 21.13 28.68 41.77 30.50 30.56 29.07 35.09 30.00 35.05 30.38 20.12 23.26 29.59 22.88 24.41 21.16 35.09 29.81 23.62 22.03 22.30 19.01 24.10 20.83 30.07 19.62 22.69 24.86 17.33 22.58 18.11 26.60 18.02 18.18 24.52 K alternative_acceptor scra,EI_chr2R_3480349_3480405 chr2R + chr2R_3480339_3480465 chr2R_3480339_3480405 chr2R_3480249_3480338;chr2R_3480466_3480505 99.46 97.24 99.31 98.74 99.15 100.00 99.22 99.04 99.63 100.00 100.00 99.53 99.07 100.00 99.31 99.35 100.00 99.25 99.18 99.69 100.00 99.32 99.47 99.39 99.12 99.25 99.36 100.00 99.38 99.42 100.00 100.00 99.64 99.54 100.00 99.29 99.03 99.30 99.57 99.65 99.39 99.63 100.00 100.00 100.00 99.40 100.00 99.66 99.57 99.14 99.39 98.91 100.00 99.08 100.00 100.00 98.67 99.46 K jcn_only_AA CG31650,I_chr2L_5042885_5042960,I_chr2L_5042888_5042983,I_chr2L_5042891_5042964,I_chr2L_5042891_5043016,RI_chr2L_5042935_5042983,I_chr2L_5043017_5043077 chr2L - chr2L_5042888_5042960;chr2L_5042885_5042960 chr2L_5042891_5042960 chr2L_5042961_5043016;chr2L_5042835_5042884 84.81 85.26 84.95 81.44 92.31 85.14 87.50 80.95 85.43 81.33 91.49 85.37 88.89 84.15 76.92 89.09 85.96 91.30 82.08 84.58 75.47 91.43 87.18 77.39 82.11 88.46 80.00 85.37 81.82 81.82 84.76 88.71 80.67 82.39 87.38 83.91 89.16 83.82 87.61 85.32 82.22 79.45 91.80 88.28 89.47 85.71 83.33 88.32 85.71 84.81 79.39 76.12 79.63 81.82 87.91 79.41 82.73 81.09 K intron_retention fru chr3R - chr3R_14256687_14258285 chr3R_14256686_14256687;chr3R_14258285_14258286 chr3R_14256554_14256686;chr3R_14258286_14258540 0.00 2.94 0.00 5.71 0.00 0.00 4.00 0.00 0.00 0.00 0.00 1.03 6.06 0.00 1.37 8.00 0.00 1.27 0.00 0.00 2.13 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 0.00 2.04 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 K intron_retention CG1681,RI_chrX_13299118_13299649,RI_chrX_13299118_13301936,I_chrX_13299118_13302688,I_chrX_13300335_13302320 chrX + chrX_13299118_13302688 chrX_13299117_13299118;chrX_13302688_13302689 chrX_13299018_13299117;chrX_13302689_13302788 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 37.14 NA NA NA NA 50.00 63.64 80.00 NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette mthl10 chr3L - chr3L_334120_334974 chr3L_334120_334237;chr3L_334395_334974 chr3L_334238_334394 chr3L_334067_334119;chr3L_334975_335169 21.43 17.39 10.87 29.63 6.52 10.71 24.32 13.92 11.61 33.33 22.58 23.53 23.33 15.38 19.57 14.93 11.63 15.79 9.62 26.09 17.24 23.53 27.59 23.53 42.11 39.13 27.59 30.00 29.41 27.78 33.33 12.00 15.38 12.86 29.41 17.39 25.00 21.88 24.24 23.33 35.00 18.06 20.00 18.75 17.24 19.05 22.22 26.67 17.39 15.15 18.42 21.43 21.43 30.00 11.48 23.08 21.62 14.29 K jcn_only_AD osa,R_chr3R_13525411_13533475,I_chr3R_13525426_13525859 chr3R - chr3R_13525426_13525849;chr3R_13525426_13525859 chr3R_13525426_13533492 chr3R_13525326_13525425;chr3R_13533493_13533575 95.71 98.25 98.80 91.84 96.33 97.67 93.44 92.71 96.12 98.17 97.65 99.22 90.62 89.66 94.78 87.10 94.62 91.76 96.25 91.28 96.77 95.28 95.71 97.37 97.47 97.59 93.57 91.16 87.12 98.07 97.75 96.72 97.66 91.97 94.97 93.01 97.87 100.00 97.22 94.66 95.65 96.53 97.18 96.00 97.30 86.75 95.70 91.21 97.65 94.78 95.21 98.08 92.47 100.00 94.23 98.46 90.16 87.67 K jcn_only_AD Csp,RI_chr3L_22262215_22262452,I_chr3L_22264863_22266536,I_chr3L_22273037_22275661 chr3L + chr3L_22260888_22262452 chr3L_22262215_22262452 chr3L_22262453_22262552;chr3L_22260788_22260887 0.00 0.00 1.54 0.00 0.93 0.00 0.47 0.45 0.00 1.49 0.00 0.43 0.92 0.92 0.00 0.68 0.00 0.00 0.81 0.00 0.00 0.00 1.00 0.00 1.05 0.00 0.75 2.86 0.00 0.00 0.00 0.00 0.76 0.00 0.00 1.72 0.68 0.00 0.64 0.61 1.82 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.80 0.00 0.56 3.33 0.00 0.00 0.00 0.00 0.00 0.89 K alternative_donor CG7920,I_chr3R_25837330_25837394 chr3R - chr3R_25837330_25837394 chr3R_25837330_25837390 chr3R_25837261_25837329;chr3R_25837395_25837459 100.00 100.00 100.00 99.35 100.00 100.00 99.22 99.46 99.64 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.07 100.00 100.00 99.61 100.00 100.00 100.00 99.44 100.00 98.70 100.00 100.00 100.00 98.75 99.07 100.00 98.51 100.00 100.00 98.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.29 98.94 99.17 100.00 100.00 99.55 100.00 100.00 100.00 100.00 99.29 99.29 99.22 100.00 100.00 K alternative_donor CG15111 chr2R + chr2R_15025035_15025322 chr2R_15025042_15025322 chr2R_15025323_15025408;chr2R_15024953_15025034 91.67 100.00 92.86 94.12 NA 88.89 100.00 89.47 95.24 NA NA 95.45 NA 91.67 90.91 95.65 NA 90.91 84.62 85.71 NA NA 92.31 100.00 NA NA 90.91 NA NA NA 100.00 NA NA 86.36 88.89 NA 87.50 NA NA 100.00 NA 94.12 87.50 90.00 NA 100.00 NA 90.00 84.00 90.91 92.31 91.67 NA NA 100.00 100.00 81.82 88.89 K alternative_acceptor Tif-IA chr2L + chr2L_22250315_22250432 chr2L_22250315_22250371 chr2L_22250120_22250314;chr2L_22250433_22250483 94.94 98.15 97.44 98.57 92.86 98.36 99.30 92.59 97.58 100.00 90.00 94.74 98.61 94.37 94.94 93.94 94.12 89.47 96.91 94.87 95.56 97.22 94.94 94.12 95.65 93.94 86.27 84.62 87.50 92.86 87.10 96.67 91.43 94.63 92.45 80.85 97.37 94.23 95.45 97.14 100.00 95.52 90.54 96.61 88.00 97.73 92.31 100.00 94.67 97.37 96.25 98.15 94.59 90.00 95.06 97.37 96.23 94.23 K jcn_only_AA CG8798,I_chr3L_19602800_19602865 chr3L - chr3L_19602800_19602865 chr3L_19602810_19602865 chr3L_19602866_19602965;chr3L_19602700_19602799 100.00 100.00 100.00 100.00 100.00 100.00 99.03 100.00 100.00 100.00 100.00 98.90 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.46 100.00 97.62 100.00 100.00 100.00 100.00 100.00 98.18 100.00 96.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.59 98.78 97.62 100.00 97.78 100.00 100.00 98.53 98.96 100.00 100.00 97.44 100.00 100.00 98.18 98.04 100.00 100.00 N alternative_acceptor CG5535 chr3L - chr3L_17847808_17849745 chr3L_17849637_17849745 chr3L_17849746_17849932;chr3L_17847440_17847807 1.92 2.08 1.61 0.65 1.23 0.95 4.23 1.91 2.31 1.35 5.88 1.90 7.04 2.33 1.65 1.41 2.82 5.56 1.48 1.76 7.25 1.58 1.86 3.54 4.29 1.54 3.25 2.40 1.82 1.11 2.27 1.32 0.89 2.13 1.92 2.63 2.00 1.83 2.73 2.15 1.23 2.06 3.53 1.03 1.27 1.39 3.49 1.62 2.00 4.69 2.26 2.68 1.11 2.22 1.40 1.87 2.50 0.40 K intron_retention CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20346738_20347206 chr3L_20346737_20346738;chr3L_20347206_20347207 chr3L_20346638_20346737;chr3L_20347207_20347505 100.00 NA 100.00 NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA 92.86 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 NA 92.86 NA NA NA NA NA 100.00 NA 100.00 NA 100.00 NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention endos,I_chr3L_14024099_14024488,I_chr3L_14024103_14024158,I_chr3L_14024103_14024546,noncoding_12505,I_chr3L_14024496_14024546 chr3L - chr3L_14024103_14024158 chr3L_14024102_14024103;chr3L_14024158_14024159 chr3L_14024003_14024102;chr3L_14024159_14024209 94.12 92.31 90.00 94.44 90.00 100.00 92.86 90.00 100.00 92.86 NA 100.00 NA NA 100.00 100.00 NA 90.00 100.00 95.45 NA 86.21 93.33 93.75 100.00 100.00 100.00 94.44 100.00 93.75 100.00 94.74 96.55 100.00 88.89 95.24 93.75 93.75 91.67 96.55 95.83 94.12 NA 94.12 89.66 90.91 91.67 96.30 94.12 93.33 92.86 90.91 100.00 100.00 100.00 76.47 94.12 92.86 K alternative_donor CG4365 chr3L + chr3L_20791960_20792242;chr3L_20792089_20792242;chr3L_20791819_20792242;chr3L_20792077_20792242 chr3L_20792100_20792242 chr3L_20792243_20793181;chr3L_20791802_20791818 5.26 6.25 5.26 3.23 0.00 7.14 5.00 0.00 4.08 9.09 0.00 2.94 11.11 0.00 4.35 4.35 6.25 5.26 9.52 1.89 0.00 0.00 17.65 5.26 0.00 0.00 6.67 11.11 25.00 8.33 15.00 11.11 6.25 0.00 0.00 12.50 5.56 7.14 5.88 7.41 8.33 5.41 9.09 7.14 12.50 5.56 0.00 6.67 2.70 5.00 5.26 0.00 3.70 16.67 4.76 4.55 2.50 4.55 K alternative_acceptor br,I_chrX_1517022_1518170,chrX_1531825_1532171.0,chrX_1532359_1533289.0,chrX_1533577_1534629.0,chrX_1535554_1536485.0 chrX + chrX_1531368_1537100 chrX_1531368_1536917 chrX_1531317_1531367;chrX_1537101_1537141 50.00 NA NA 45.45 NA NA 71.43 55.56 58.33 NA NA 75.00 NA NA NA NA NA NA NA 37.50 NA 30.77 46.15 36.36 NA NA NA NA NA 38.46 NA NA 55.56 50.00 NA 37.50 21.43 NA 16.67 41.67 NA 54.55 NA NA NA 50.00 NA 55.56 55.56 NA 20.00 NA NA NA NA NA 50.00 50.00 K intron_retention CG10082,E_chr2R_17533874_17544072,RI_chr2R_17537544_17537615,I_chr2R_17541516_17542279,I_chr2R_17541573_17542279,I_chr2R_17543813_17543881 chr2R + chr2R_17540069_17541147 chr2R_17540068_17540069;chr2R_17541147_17541148 chr2R_17539942_17540068;chr2R_17541148_17541210 94.44 87.50 100.00 100.00 NA 100.00 100.00 100.00 96.00 NA NA 96.43 NA 90.91 100.00 93.33 100.00 100.00 100.00 85.19 90.00 60.00 NA NA NA 88.89 NA NA NA NA 88.89 NA NA 91.67 NA NA 90.91 NA 91.67 90.00 NA 95.24 81.82 92.31 NA 100.00 NA NA 94.44 88.89 NA NA NA NA 100.00 NA 100.00 NA K intron_retention shep,I_chr3L_5157070_5160067,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5157076_5160067 chr3L_5157075_5157076;chr3L_5160067_5160068 chr3L_5156934_5157075;chr3L_5160068_5160159 95.24 95.83 100.00 90.70 87.50 94.12 94.12 95.74 92.41 94.12 96.97 95.35 97.14 96.30 94.44 93.75 95.24 95.65 89.13 97.92 86.21 97.62 95.12 95.65 94.44 94.12 95.83 100.00 95.24 100.00 97.44 100.00 92.00 97.62 94.12 93.33 97.06 100.00 96.67 85.19 90.00 94.44 100.00 93.33 90.00 81.25 100.00 NA 94.83 100.00 90.91 96.00 NA 100.00 100.00 91.67 94.74 75.00 K jcn_only_AA CG11148,I_chr4_882005_882418,I_chr4_885038_885994,RI_chr4_886921_887162 chr4 - chr4_885034_885973 chr4_885038_885973 chr4_885974_886268;chr4_884938_885033 99.25 100.00 100.00 98.53 100.00 100.00 98.70 99.42 98.54 95.24 98.72 99.45 100.00 98.90 100.00 98.14 98.70 100.00 100.00 98.35 100.00 100.00 98.70 98.44 100.00 99.25 98.86 95.83 100.00 97.50 98.08 100.00 98.17 98.31 94.83 100.00 98.53 100.00 100.00 100.00 97.83 98.98 99.00 100.00 96.00 100.00 100.00 100.00 99.59 98.08 97.30 100.00 100.00 95.65 100.00 94.74 100.00 99.08 K intron_retention SD23414,CG9125,I_chrX_16696492_16696589 chrX - chrX_16696503_16696589 chrX_16696502_16696503;chrX_16696589_16696590 chrX_16695945_16696502;chrX_16696590_16696689 0.00 1.96 0.00 0.00 0.00 0.00 2.78 2.20 1.94 0.00 0.00 3.53 0.00 0.00 0.00 3.39 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.88 5.56 3.33 0.00 6.56 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 K intron_retention sbr,RI_chrX_10731248_10731484 chrX - chrX_10728951_10730552 chrX_10728950_10728951;chrX_10730552_10730553 chrX_10728914_10728950;chrX_10730553_10730662 53.19 48.28 37.04 53.49 41.67 65.00 65.00 55.77 55.36 40.00 50.00 53.49 65.00 64.00 46.88 67.57 42.31 61.90 57.14 54.55 59.09 48.98 33.33 31.91 40.74 52.00 44.44 56.25 47.37 52.78 70.00 56.25 56.25 47.92 38.71 55.00 46.15 47.37 41.03 53.19 56.52 49.12 52.63 48.48 69.23 75.00 63.33 52.38 55.77 61.40 43.59 33.33 66.67 66.67 48.84 57.14 50.00 60.47 K mutually_exclusive Rho1,I_chr2R_11990455_11992537,RI_chr2R_11991687_11992537 chr2R + chr2R_11990455_11992537,chr2R_11992688_11993221 chr2R_11990455_11991115,chr2R_11991280_11993221 chr2R_11992538_11992687 chr2R_11991116_11991279 chr2R_11990435_11990454;chr2R_11993222_11993302 20.00 NA NA 22.22 NA NA 14.29 0.00 11.11 NA 16.67 11.11 71.43 NA 0.00 30.00 NA NA NA NA NA NA NA 25.00 NA NA 20.00 NA 50.00 NA NA NA NA NA NA NA 40.00 NA NA 25.00 NA 28.57 NA NA NA 0.00 NA NA NA 16.67 NA NA NA NA NA NA NA NA K intron_retention Med,CG1792 chr3R + chr3R_27437467_27437700 chr3R_27437466_27437467;chr3R_27437700_27437701 chr3R_27437246_27437466;chr3R_27437701_27437962 3.03 0.00 NA 9.09 0.00 NA NA NA 4.55 0.00 0.00 0.00 35.71 NA 0.00 NA 0.00 0.00 NA 4.76 0.00 16.41 8.51 0.00 9.62 12.50 6.52 0.00 0.00 3.57 NA 0.00 9.09 4.17 2.94 6.12 1.61 1.37 2.56 4.00 6.06 7.41 NA 3.03 3.03 4.08 1.96 5.56 6.06 6.78 4.35 5.71 0.00 2.22 0.00 4.17 2.94 0.00 K intron_retention ssp2,CG32135,I_chr3L_13964418_13964473 chr3L + chr3L_13958731_13961746 chr3L_13958730_13958731;chr3L_13961746_13961747 chr3L_13958624_13958730;chr3L_13961747_13961802 13.79 12.90 22.50 17.86 13.79 18.52 27.66 20.41 22.89 10.71 12.50 16.95 22.86 26.92 12.12 20.41 11.43 26.92 15.38 20.97 13.79 26.32 7.46 11.90 3.85 20.59 4.76 19.44 18.52 19.05 28.95 NA 5.71 19.61 6.67 8.33 17.78 9.68 6.25 16.67 7.69 16.67 20.69 13.16 12.50 9.09 5.00 10.00 19.61 7.14 8.00 4.65 NA NA 23.26 0.00 0.00 4.76 K intron_retention CG13398 chr2L - chr2L_8414889_8414960 chr2L_8414888_8414889;chr2L_8414960_8414961 chr2L_8412140_8414888;chr2L_8414961_8415235 30.77 23.08 29.41 59.38 40.00 29.41 41.94 40.91 40.00 21.43 25.00 30.30 NA 33.33 34.78 38.10 NA NA 55.56 30.56 70.00 86.67 25.00 31.82 36.36 53.85 37.50 60.00 40.00 30.43 33.33 0.00 30.00 37.50 35.71 30.77 25.00 20.83 22.58 31.25 NA 30.00 NA 26.09 15.79 41.67 28.57 29.41 36.00 NA 30.30 25.00 14.29 NA 36.84 NA 25.00 21.05 N intron_retention RpS27A,Ip259 chr2L + chr2L_10408622_10408738 chr2L_10408621_10408622;chr2L_10408738_10408739 chr2L_10408612_10408621;chr2L_10408739_10409132 17.65 35.71 15.79 5.75 31.25 NA 6.41 16.22 16.67 5.00 NA 28.57 12.50 25.00 28.57 12.50 NA NA 14.29 22.73 10.53 12.50 35.29 19.05 NA NA 42.11 37.50 3.03 17.65 11.76 NA NA 16.00 10.53 8.00 38.89 NA NA 28.57 14.29 18.18 5.56 NA NA 24.00 20.69 35.71 25.58 43.75 17.65 NA 18.18 11.76 35.71 17.39 17.02 25.93 K intron_retention Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046108 chr3L_16045250_16045251;chr3L_16046108_16046109 chr3L_16045216_16045250;chr3L_16046109_16046204 100.00 100.00 100.00 100.00 NA 100.00 94.44 100.00 100.00 NA NA 100.00 93.75 100.00 100.00 95.00 100.00 100.00 100.00 94.44 NA 100.00 100.00 100.00 NA 100.00 76.92 100.00 NA 90.91 100.00 NA 94.44 95.45 100.00 95.45 88.89 100.00 100.00 100.00 NA 95.24 100.00 90.00 NA NA 88.89 92.31 95.24 NA 100.00 NA NA NA 80.95 NA NA NA K intron_retention Kr-h2 chr2L + chr2L_6072984_6073039 chr2L_6072983_6072984;chr2L_6073039_6073040 chr2L_6072734_6072983;chr2L_6073040_6073173 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6463,I_chr3L_10686961_10687096 chr3L - chr3L_10686607_10686805 chr3L_10686606_10686607;chr3L_10686805_10686806 chr3L_10686187_10686606;chr3L_10686806_10686960 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.43 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Nc73EF,I_chr3L_16950628_16951334,I_chr3L_16950952_16952198,I_chr3L_16951588_16952198,I_chr3L_16951626_16952198,I_chr3L_16952138_16952198,I_chr3L_16952985_16955434,I_chr3L_16953768_16954599 chr3L + chr3L_16950628_16952198;chr3L_16950606_16952198 chr3L_16950615_16952198 chr3L_16952199_16952207;chr3L_16950580_16950605 13.95 26.09 13.95 8.11 11.54 14.81 10.00 9.80 14.58 NA NA 23.08 3.45 15.38 18.42 13.16 23.08 NA 18.42 17.07 9.38 12.50 19.05 14.29 10.34 NA 9.38 10.00 NA NA 10.00 NA NA 10.91 18.42 0.00 11.11 6.12 14.55 11.90 NA 25.00 22.73 14.29 18.18 15.38 33.33 NA 16.18 16.98 12.68 10.71 NA 10.00 12.50 23.08 8.00 NA K cassette CG5853,RI_chr2L_9942818_9944294,I_chr2L_9944682_9947179 chr2L - chr2L_9942818_9944294 chr2L_9942818_9942882;chr2L_9943054_9944294 chr2L_9942883_9943053 chr2L_9942722_9942817;chr2L_9944295_9944394 98.39 97.44 98.00 94.52 100.00 100.00 98.90 98.55 98.92 96.00 100.00 98.39 100.00 97.73 100.00 98.18 97.50 98.00 100.00 97.94 100.00 94.67 97.92 97.96 96.55 98.25 100.00 100.00 87.18 97.30 98.15 100.00 100.00 98.51 100.00 94.74 98.00 100.00 100.00 96.61 93.94 100.00 97.14 100.00 97.37 100.00 100.00 98.11 98.81 96.88 98.18 100.00 100.00 96.77 100.00 100.00 100.00 97.73 K intron_retention babo chr2R + chr2R_4842673_4843217 chr2R_4842672_4842673;chr2R_4843217_4843218 chr2R_4842648_4842672;chr2R_4843218_4843257 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 94.74 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA 100.00 NA NA NA NA 100.00 NA 100.00 NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention LIMK1,CG1824,I_chrX_12488942_12489000 chrX - chrX_12489365_12489529 chrX_12489364_12489365;chrX_12489529_12489530 chrX_12489001_12489364;chrX_12489530_12489657 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 4.55 1.30 3.64 0.00 NA 10.81 2.70 9.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 NA 0.00 2.74 0.00 0.00 2.50 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 3.03 K alternative_donor Tsp42Ea,CG30159 chr2R + chr2R_2880561_2880625 chr2R_2880566_2880625 chr2R_2880626_2881652;chr2R_2880504_2880560 21.74 21.21 20.69 31.82 23.53 23.53 35.29 19.44 17.50 21.74 13.64 25.00 29.41 26.32 15.79 21.88 23.53 15.00 19.05 27.27 22.22 16.67 15.62 18.42 40.00 60.00 36.00 38.24 60.87 19.05 21.05 17.65 24.24 29.03 33.33 35.71 15.69 22.50 19.35 17.39 35.00 23.08 14.29 20.51 25.00 28.57 19.05 31.03 21.62 14.29 17.65 15.38 13.64 22.22 21.43 9.09 18.75 32.26 K jcn_only_AD Appl,I_chrX_425910_437103 chrX + chrX_469384_469503 chrX_469396_469503 chrX_469504_469555;chrX_469307_469383 36.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.00 NA K intron_retention CG42231,chif,CaBP1 chr2L - chr2L_16343305_16344425 chr2L_16343304_16343305;chr2L_16344425_16344426 chr2L_16342822_16343304;chr2L_16344426_16348431 34.62 39.13 50.00 47.06 29.17 30.00 46.15 44.83 39.47 29.41 70.00 23.33 70.00 37.50 50.00 50.00 30.00 20.00 26.32 45.16 50.00 23.08 29.55 30.00 22.22 33.33 48.00 56.25 25.00 50.00 30.30 41.67 29.41 47.06 42.86 50.00 34.88 34.62 34.21 35.48 40.00 40.00 46.67 34.78 30.77 20.59 25.00 41.18 26.83 31.03 34.21 33.33 24.00 25.93 47.62 26.92 26.09 33.33 K intron_retention CG13603,I_chr3R_19816750_19817495,I_chr3R_19825840_19825904 chr3R - chr3R_19811822_19811887 chr3R_19811821_19811822;chr3R_19811887_19811888 chr3R_19811578_19811821;chr3R_19811888_19812031 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD mys,I_chrX_7958795_7961094 chrX + chrX_7955904_7957872;chrX_7955908_7957872;chrX_7955914_7957872;chrX_7955759_7957872;chrX_7956114_7957872;chrX_7955901_7957872;chrX_7955967_7957872 chrX_7956125_7957872 chrX_7957873_7958492;chrX_7955741_7955758 0.00 0.00 0.00 0.60 0.00 0.00 0.41 0.24 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.89 0.00 0.00 0.00 0.00 0.45 0.28 0.00 0.53 0.84 0.00 2.40 0.00 0.83 0.46 0.50 0.00 0.29 0.00 0.71 0.63 0.34 0.00 0.00 0.74 0.85 0.00 0.53 1.02 0.57 0.00 1.64 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.53 0.00 K jcn_only_AA CG9007,I_chr3L_13995402_13996269,I_chr3L_13995402_13996272,I_chr3L_13995402_13996296,I_chr3L_13995480_13996292,RI_chr3L_14010982_14011111 chr3L + chr3L_13995402_13996272;chr3L_13995402_13996296;chr3L_13995402_13996292 chr3L_13995402_13996269 chr3L_13995380_13995401;chr3L_13996297_13996360 0.00 NA 0.00 0.00 NA NA 3.23 0.00 5.88 NA NA 8.33 NA NA 0.00 0.00 NA NA 0.00 5.00 NA NA 0.00 NA NA NA NA NA NA NA 4.76 NA NA 0.00 0.00 NA NA NA NA NA NA 3.12 0.00 NA NA NA NA 0.00 2.56 NA NA NA NA NA 0.00 NA NA NA K intron_retention Pabp2,I_chr2R_4020297_4020426 chr2R + chr2R_4020297_4020446 chr2R_4020296_4020297;chr2R_4020446_4020447 chr2R_4020197_4020296;chr2R_4020447_4020526 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 K alternative_donor CG17883,I_chr2R_560147_560511,I_chr2R_560547_560618 chr2R + chr2R_560568_560618;chr2R_560547_560618;chr2R_560147_560618 chr2R_560565_560618 chr2R_560619_560642;chr2R_560047_560146 23.81 18.18 34.69 27.27 19.35 27.03 20.20 32.67 20.83 33.33 38.89 19.75 27.78 31.25 27.66 34.83 25.45 19.51 23.19 29.91 20.69 18.75 12.00 28.89 19.23 25.93 25.53 31.03 40.00 13.16 21.82 12.50 18.18 23.81 18.18 47.37 26.47 20.00 12.90 25.37 19.35 10.59 24.53 29.55 16.22 41.54 20.00 6.25 21.82 28.26 30.61 22.22 20.59 27.78 33.33 18.00 17.19 25.29 K jcn_only_AD BM-40-SPARC,I_chr3R_22696095_22696231,I_chr3R_22696095_22696291,I_chr3R_22696095_22697413 chr3R - chr3R_22696095_22697647;chr3R_22696095_22696291;chr3R_22696095_22696231 chr3R_22696095_22697413 chr3R_22695995_22696094;chr3R_22697648_22697767 0.29 0.37 0.21 0.30 0.31 0.27 0.34 0.22 0.26 0.29 0.16 0.45 0.19 0.26 0.34 0.23 0.40 0.22 0.21 0.30 0.17 0.12 0.48 0.32 0.44 0.23 0.14 0.17 0.66 0.38 0.30 0.53 0.13 0.40 0.34 0.45 0.17 0.23 0.18 0.27 0.55 0.32 0.29 0.19 0.19 0.20 0.32 0.44 0.20 0.22 0.47 0.38 0.17 0.34 0.29 0.35 0.15 0.40 K intron_retention CG2177,I_chr4_334269_334329,I_chr4_334269_334505,I_chr4_334439_334505 chr4 - chr4_334269_334373 chr4_334268_334269;chr4_334373_334374 chr4_334169_334268;chr4_334374_334429 11.11 13.04 9.76 14.92 10.71 13.04 18.67 12.74 14.15 7.32 14.63 9.49 12.66 13.89 7.62 10.22 18.00 6.77 11.61 8.29 10.61 9.84 14.49 9.80 11.11 12.22 14.55 9.09 10.98 10.94 17.71 11.54 15.45 13.33 8.51 10.26 25.00 21.43 5.00 10.74 16.46 10.66 12.12 6.90 16.46 17.48 9.38 10.71 10.99 17.65 10.29 6.67 2.27 6.82 12.63 14.58 14.29 10.00 K cassette sqd,I_chr3R_9462248_9471474,I_chr3R_9468150_9468236,I_chr3R_9470417_9471474 chr3R - chr3R_9462248_9468020 chr3R_9462248_9462692;chr3R_9462801_9468020 chr3R_9462693_9462800 chr3R_9462148_9462247;chr3R_9468021_9468149 13.46 12.24 8.05 5.37 10.20 11.54 3.41 6.93 11.48 6.67 19.48 12.99 0.00 8.75 9.27 16.36 11.76 17.02 6.74 9.13 24.64 10.42 16.20 15.85 14.18 9.17 11.19 11.45 10.60 10.58 10.71 18.22 16.67 13.33 20.00 31.91 15.87 15.38 14.29 15.80 13.95 12.30 14.08 20.95 24.25 13.46 15.13 14.50 10.23 15.79 14.19 12.79 20.80 17.53 9.42 14.66 16.22 29.41 K intron_retention I_chr2R_20828961_20829772,CG15861,CG2790,E_chr2R_20851190_20852094 chr2R - chr2R_20831457_20831541 chr2R_20831456_20831457;chr2R_20831541_20831542 chr2R_20831346_20831456;chr2R_20831542_20832368 16.45 13.89 30.43 14.29 28.00 12.50 16.22 36.84 20.69 26.32 20.00 18.37 27.78 30.77 30.43 25.00 33.33 36.36 31.58 21.57 24.00 10.00 13.33 12.24 9.52 22.22 18.87 23.53 7.50 10.00 23.08 5.56 2.78 28.57 5.56 13.16 12.31 8.16 15.52 14.71 0.00 18.37 6.67 12.50 11.36 16.67 17.95 NA 25.00 12.50 13.79 18.18 9.09 18.18 20.00 3.85 8.00 15.00 K intron_retention CG8080,REI_chr2R_4979159_4979234,I_chr2R_4979276_4979936,CG13741 chr2R - chr2R_4979159_4979936 chr2R_4979158_4979159;chr2R_4979936_4979937 chr2R_4979059_4979158;chr2R_4979937_4980036 10.64 12.50 23.53 0.00 6.67 0.00 46.15 7.32 10.64 NA NA 7.14 31.58 16.67 8.70 0.00 11.11 7.14 0.00 16.67 NA NA 9.09 6.67 NA NA 17.65 NA NA 14.29 10.53 NA 16.67 6.90 14.29 NA 13.33 10.00 22.22 15.15 NA 15.38 15.00 4.00 NA 6.90 7.14 17.65 12.77 10.53 16.67 5.00 NA NA 15.62 15.00 3.85 0.00 K intron_retention Vps13,I_chr2R_3464510_3464571 chr2R + chr2R_3467675_3467733 chr2R_3467674_3467675;chr2R_3467733_3467734 chr2R_3467536_3467674;chr2R_3467734_3468180 0.00 0.00 0.00 6.35 7.41 0.00 0.00 1.59 0.00 7.32 0.00 0.00 0.00 0.00 0.00 11.54 0.00 0.00 0.00 2.25 0.00 11.48 0.00 0.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046111 chr3L_16045275_16046111 chr3L_16046112_16046204;chr3L_16045216_16045250 42.71 41.67 58.33 41.67 NA 50.00 41.67 46.15 36.36 NA NA 50.00 43.75 53.33 25.00 50.00 25.00 NA 33.33 38.46 NA 26.09 47.62 55.56 NA 64.29 60.00 NA NA 17.65 33.33 NA 29.41 55.00 58.33 50.00 55.56 NA 53.33 23.53 25.00 55.00 35.71 NA NA 30.77 NA 22.22 30.77 NA 50.00 NA NA NA 50.00 NA NA 0.00 K intron_retention ERp60,RI_chr2R_7790917_7791377 chr2R - chr2R_7776016_7776079 chr2R_7776015_7776016;chr2R_7776079_7776080 chr2R_7775073_7776015;chr2R_7776080_7776193 0.15 0.12 0.11 0.18 0.00 0.27 0.00 0.00 0.20 0.00 0.00 0.19 0.00 0.00 0.17 0.15 0.00 0.00 0.17 0.09 0.13 0.49 0.20 0.09 0.19 0.10 0.89 0.86 0.40 0.00 0.19 0.29 0.25 0.00 0.00 0.71 0.24 0.00 0.20 0.27 0.00 0.11 0.13 0.18 0.00 0.18 0.20 0.12 0.10 0.18 0.21 0.00 0.44 0.15 0.08 0.00 0.20 0.24 N alternative_acceptor MAPk-Ak2,RI_chrX_5655618_5656137,I_chrX_5656715_5657427,I_chrX_5656715_5657893,I_chrX_5656715_5657974 chrX - chrX_5656678_5658141 chrX_5656715_5658141 chrX_5658142_5658214;chrX_5656615_5656677 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 57.69 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 68.42 68.75 100.00 100.00 100.00 86.15 84.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 76.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Git chr2R - chr2R_6532660_6532842 chr2R_6532659_6532660;chr2R_6532842_6532843 chr2R_6531760_6532659;chr2R_6532843_6532923 0.00 0.00 6.67 8.33 NA 0.00 23.08 7.41 6.45 NA NA 0.00 0.00 8.00 0.00 0.00 NA 0.00 0.00 16.00 NA 0.00 0.00 0.00 9.09 0.00 6.67 NA 0.00 NA 14.29 NA NA 4.76 0.00 NA 0.00 7.14 NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 4.76 0.00 0.00 0.00 NA NA 3.33 0.00 0.00 0.00 K cassette Taf12,RI_chr3R_7504595_7505288,I_chr3R_7504949_7505288 chr3R - chr3R_7504907_7505288 chr3R_7504907_7505075;chr3R_7505121_7505288 chr3R_7505076_7505120 chr3R_7504849_7504906;chr3R_7505289_7505388 44.44 28.00 41.67 52.27 35.00 35.71 73.91 65.38 51.06 37.50 46.15 68.18 69.23 70.59 33.33 56.41 66.67 46.67 63.64 47.37 28.57 82.61 33.33 39.13 41.18 50.00 29.17 50.00 44.44 40.91 50.00 48.28 51.72 50.00 38.89 40.00 24.39 27.78 20.83 31.25 69.23 52.38 73.33 44.44 59.26 42.00 34.78 30.77 37.50 59.09 19.35 25.93 16.00 47.06 52.38 24.32 31.03 36.11 K alternative_acceptor CycB,I_chr2R_18692089_18692164 chr2R - chr2R_18693064_18693171 chr2R_18693070_18693171 chr2R_18693172_18693380;chr2R_18692165_18693063 95.29 98.08 92.16 95.24 92.11 93.18 97.62 93.94 95.29 95.83 97.30 92.17 97.06 97.56 94.92 96.49 95.24 96.83 100.00 95.50 90.48 100.00 97.67 94.03 90.91 98.31 94.83 95.83 97.30 94.44 97.44 95.12 97.01 94.74 96.30 100.00 94.37 95.08 94.12 96.97 91.89 94.85 97.96 90.91 98.08 93.48 92.00 92.06 92.63 94.34 95.89 100.00 95.83 93.48 98.36 91.30 100.00 95.65 K intron_retention hipk,RI_chr3L_548068_552227 chr3L + chr3L_570200_570262 chr3L_570199_570200;chr3L_570262_570263 chr3L_569879_570199;chr3L_570263_571014 0.00 0.80 0.00 1.34 0.00 0.55 0.56 0.46 0.44 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.45 0.45 0.00 0.86 0.00 0.65 1.90 0.00 0.36 0.93 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.63 0.48 0.00 0.00 0.72 0.00 0.00 0.00 K jcn_only_AA mask,I_chr3R_20073365_20073461 chr3R + chr3R_20065480_20065550 chr3R_20065480_20065541 chr3R_20065264_20065479;chr3R_20065551_20066766 91.30 90.57 91.04 94.23 95.74 92.31 86.67 89.91 88.28 94.44 95.24 90.00 92.06 81.48 87.32 90.77 96.67 94.74 90.20 88.35 92.31 87.80 94.00 91.67 93.48 83.67 94.64 82.86 84.44 94.90 85.37 90.48 90.67 94.90 91.80 95.52 94.51 98.04 92.55 84.42 85.71 85.59 100.00 96.61 85.00 87.88 95.24 91.67 90.48 NA 97.65 97.44 82.86 90.48 87.50 91.30 NA 97.56 K intron_retention Rga,Spec2 chr3R - chr3R_1433315_1433405 chr3R_1433314_1433315;chr3R_1433405_1433406 chr3R_1433106_1433314;chr3R_1433406_1433570 0.00 1.04 2.13 2.17 0.00 0.00 1.11 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 0.00 2.78 1.59 0.00 0.00 0.00 0.00 0.00 1.11 3.39 2.08 0.00 0.00 0.83 1.49 0.00 0.93 1.32 0.91 0.00 0.00 0.00 1.69 0.00 0.00 0.00 K alternative_donor heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27805342_27810955;chr3R_27805342_27811214 chr3R_27805342_27811232 chr3R_27805247_27805341;chr3R_27811233_27811433 0.00 5.56 0.00 2.50 8.70 3.33 0.00 0.00 1.56 0.00 0.00 0.00 3.70 2.86 0.00 0.00 12.50 0.00 0.00 0.00 5.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 17.65 0.00 0.00 0.00 5.88 0.00 6.67 5.88 0.00 0.00 3.85 2.78 0.00 2.00 3.33 0.00 0.00 5.56 0.00 0.00 0.00 6.25 0.00 0.00 10.00 0.00 2.70 0.00 0.00 0.00 K intron_retention CG7028,I_chr3L_207277_208117 chr3L - chr3L_208318_208371 chr3L_208317_208318;chr3L_208371_208372 chr3L_208118_208317;chr3L_208372_208666 0.00 0.00 0.00 0.00 0.00 0.00 6.38 1.54 5.26 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor bur,I_chr2L_21175961_21176006,I_chr2L_21177679_21178250,I_chr2L_21177960_21179329 chr2L - chr2L_21175934_21176006 chr2L_21175961_21176006 chr2L_21176007_21176106;chr2L_21175861_21175933 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 K alternative_donor GXIVsPLA2,I_chr3L_15948429_15948487,I_chr3L_15950680_15950738 chr3L + chr3L_15948410_15948487;chr3L_15948429_15948487 chr3L_15948415_15948487 chr3L_15948488_15948587;chr3L_15948329_15948409 23.08 NA 33.33 23.08 NA NA 15.38 NA NA NA NA 26.67 NA NA 18.18 14.29 NA NA NA 71.43 18.18 NA NA NA NA NA NA NA NA NA 48.15 NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA K intron_retention sqd,I_chr3R_9462248_9471474,I_chr3R_9468150_9468236,I_chr3R_9470417_9471474 chr3R - chr3R_9468932_9470080 chr3R_9468931_9468932;chr3R_9470080_9470081 chr3R_9468891_9468931;chr3R_9470081_9470120 26.49 NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA 16.67 NA NA NA 41.18 NA NA 12.50 NA NA NA NA 38.46 NA NA 4.35 NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA 63.64 22.22 NA NA NA NA NA NA NA NA 30.77 K intron_retention CG2765,RI_chr2R_20849027_20852094,I_chr2R_20849271_20849626,I_chr2R_20849271_20850005,E_chr2R_20849271_20850693,E_chr2R_20849271_20851166,E_chr2R_20849271_20852090,E_chr2R_20851190_20852094 chr2R - chr2R_20849271_20849865 chr2R_20849270_20849271;chr2R_20849865_20849866 chr2R_20849171_20849270;chr2R_20849866_20849993 70.00 NA NA NA NA NA 71.43 77.78 81.82 NA NA 53.33 NA NA 70.00 54.55 NA NA NA 61.54 NA 75.00 91.67 54.55 NA 72.73 69.23 90.00 54.55 NA NA NA 33.33 NA NA 77.78 50.00 NA NA 57.14 NA 69.23 NA 35.00 NA NA NA 77.78 83.33 NA 72.73 NA NA NA NA NA NA NA K jcn_only_AD CG12428,I_chr3R_23531574_23532266 chr3R - chr3R_23531574_23531786;chr3R_23531574_23532276 chr3R_23531574_23531981 chr3R_23531474_23531573;chr3R_23532277_23532366 65.57 NA NA 48.00 NA NA 75.00 68.18 62.96 NA NA NA NA NA NA NA NA NA NA 55.26 NA 73.08 57.14 NA NA NA NA NA NA 75.00 95.24 NA NA NA NA NA NA NA NA NA NA 60.87 NA NA NA NA NA NA 59.38 NA 70.00 NA NA NA NA NA NA NA K cassette CG12065,CE_chrX_8469528_8477573 chrX + chrX_8478609_8479842 chrX_8478609_8478875;chrX_8478957_8479842 chrX_8478876_8478956 chrX_8478489_8478608;chrX_8479843_8479951 0.52 0.29 0.64 0.28 0.00 0.38 0.97 0.23 0.43 0.65 0.37 0.58 0.50 0.86 0.32 1.00 0.41 1.17 0.00 1.42 0.00 1.14 0.20 0.22 0.65 0.00 1.15 0.83 2.82 0.89 1.02 0.52 1.58 0.00 0.76 1.52 0.44 0.53 0.57 0.62 1.02 0.32 0.51 0.70 1.05 0.58 0.43 1.06 0.19 0.32 0.25 0.42 0.34 0.35 0.38 1.18 0.43 0.97 N alternative_donor Hcf,I_chr4_391984_392875 chr4 + chr4_380985_381212;chr4_380602_381212;chr4_380646_381212;chr4_380607_381212 chr4_380911_381212 chr4_381213_381632;chr4_380600_380601 83.33 80.00 85.71 52.17 100.00 66.67 68.75 94.44 62.96 50.00 100.00 50.00 60.00 55.56 80.00 50.00 87.50 100.00 75.00 88.89 100.00 100.00 80.00 80.00 100.00 83.33 75.00 100.00 100.00 50.00 100.00 NA 100.00 64.71 100.00 83.33 50.00 NA NA 85.71 NA 86.67 87.50 40.00 NA NA NA 80.00 52.38 100.00 100.00 75.00 NA NA 100.00 NA 100.00 100.00 K intron_retention hkl chr2L + chr2L_19045437_19045521 chr2L_19045436_19045437;chr2L_19045521_19045522 chr2L_19045385_19045436;chr2L_19045522_19046142 77.42 79.31 76.00 83.02 71.43 83.33 85.19 64.10 76.47 91.67 68.75 74.51 77.78 73.91 78.95 75.00 71.43 77.27 85.71 82.93 76.47 74.07 88.24 70.37 80.00 95.00 89.66 81.82 91.67 57.69 82.50 82.61 85.29 76.32 72.22 95.00 68.97 63.16 84.62 75.00 95.83 78.57 75.00 60.00 54.55 95.24 70.83 80.00 74.19 83.33 78.12 66.67 73.33 81.82 77.42 72.00 52.17 80.65 K alternative_donor CG12703 chrX + chrX_19645198_19645380;chrX_19645200_19645380;chrX_19645202_19645380;chrX_19645171_19645380;chrX_19644924_19645380 chrX_19645123_19645380 chrX_19645381_19645579;chrX_19644833_19644923 1.03 0.00 1.15 4.65 1.75 0.00 3.19 0.00 0.58 2.00 1.59 1.38 0.00 2.78 0.00 1.03 1.59 1.27 0.00 0.65 0.00 1.39 2.91 1.45 2.04 3.77 3.08 0.00 1.89 1.06 1.15 0.00 0.00 0.00 1.39 1.67 0.00 1.59 0.00 0.81 1.52 0.00 1.54 0.00 1.35 0.00 0.00 0.70 0.63 1.69 0.00 0.00 0.00 2.22 0.00 0.00 1.43 0.00 K intron_retention CG12384,I_chr2R_7245925_7246462 chr2R - chr2R_7246527_7246592 chr2R_7246526_7246527;chr2R_7246592_7246593 chr2R_7246463_7246526;chr2R_7246593_7246822 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor PNGase,I_chr2R_1906759_1906817,I_chr2R_1906899_1906977 chr2R + chr2R_1906899_1906977 chr2R_1906899_1906957 chr2R_1906833_1906898;chr2R_1906978_1907054 98.55 98.04 100.00 97.06 97.50 97.37 98.65 98.72 99.03 97.30 97.92 100.00 97.83 100.00 100.00 98.55 100.00 100.00 97.01 98.95 97.30 98.57 100.00 96.55 97.92 97.56 98.61 98.04 99.02 100.00 98.46 98.84 96.23 97.75 100.00 92.31 100.00 95.35 97.83 99.32 98.26 100.00 100.00 100.00 98.86 97.86 98.46 98.43 97.59 100.00 98.31 98.31 100.00 100.00 95.08 97.44 98.75 99.47 K intron_retention CG5288 chr3L - chr3L_8978087_8978152 chr3L_8978086_8978087;chr3L_8978152_8978153 chr3L_8977913_8978086;chr3L_8978153_8978331 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 3.17 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Idgf2,Idgf3 chr2L + chr2L_16451112_16451189 chr2L_16451111_16451112;chr2L_16451189_16451190 chr2L_16451080_16451111;chr2L_16451190_16451307 100.00 100.00 100.00 100.00 100.00 99.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.51 100.00 99.27 100.00 99.68 100.00 100.00 100.00 98.11 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.01 99.66 100.00 100.00 100.00 100.00 100.00 100.00 98.55 99.75 99.30 100.00 100.00 100.00 100.00 100.00 99.75 100.00 100.00 100.00 100.00 100.00 99.54 100.00 100.00 100.00 K jcn_only_AD CG12054 chr3R + chr3R_27046565_27046634 chr3R_27046569_27046634 chr3R_27046635_27046999;chr3R_27046436_27046564 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.00 1.35 NA 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 5.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 K alternative_donor scrib,I_chr3R_22362324_22363015,I_chr3R_22381374_22399575,I_chr3R_22406745_22416162,I_chr3R_22416440_22420970,I_chr3R_22425016_22429281 chr3R + chr3R_22362244_22363092;chr3R_22362315_22363092;chr3R_22362254_22363092;chr3R_22362224_22363092;chr3R_22362324_22363092;chr3R_22362142_22363092 chr3R_22362120_22363092 chr3R_22363093_22363115;chr3R_22362112_22362119 33.33 42.86 42.31 28.38 30.00 28.57 30.77 38.03 37.27 36.84 35.00 36.11 32.43 35.71 35.71 33.33 44.74 35.14 33.33 44.57 46.51 55.17 35.29 19.44 26.67 26.47 18.75 5.26 30.19 45.57 33.33 52.17 38.64 36.62 30.95 40.91 42.11 36.36 23.08 31.48 24.39 32.91 32.35 34.21 33.33 29.27 31.82 40.66 27.54 31.25 26.09 44.83 25.00 44.44 27.45 26.67 31.25 44.78 K intron_retention CG13784,I_chr2L_7209439_7209522,I_chr2L_7219131_7219918 chr2L - chr2L_7218854_7218908 chr2L_7218853_7218854;chr2L_7218908_7218909 chr2L_7218643_7218853;chr2L_7218909_7219130 71.66 NA 80.00 NA NA NA 46.15 NA 83.33 NA NA 66.67 NA 88.89 NA 84.62 NA NA 60.00 77.78 NA 54.55 87.50 66.67 NA NA 88.89 87.50 NA 70.00 60.00 NA NA 64.29 80.00 NA NA NA 45.45 64.29 NA 73.33 NA NA NA NA NA 65.00 73.68 NA 100.00 NA NA NA 69.23 NA NA NA K jcn_only_AA CG3835,I_chrX_2035640_2035931,I_chrX_2036036_2037024 chrX + chrX_2035640_2037024 chrX_2035640_2035931 chrX_2035540_2035639;chrX_2037025_2037124 0.93 1.27 1.56 0.00 3.33 0.00 0.00 0.00 0.00 1.45 0.00 2.78 0.00 0.00 0.00 1.11 4.35 0.00 0.00 1.81 0.00 0.00 0.93 1.10 1.56 0.00 1.49 2.94 0.00 1.00 4.11 1.01 2.82 1.35 1.05 0.00 0.00 0.00 0.00 1.43 1.00 1.28 2.44 1.43 0.00 0.98 2.04 0.72 1.61 0.00 0.73 2.38 0.00 0.88 0.00 0.00 1.32 0.42 K alternative_donor CAH2 chr3L + chr3L_12173174_12174775 chr3L_12173256_12174775 chr3L_12174776_12175248;chr3L_12172979_12173173 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.78 98.11 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2393243;chrX_2393712_2394269;chrX_2394396_2395151;chrX_2395275_2395659 chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2393244_2393711;chrX_2394270_2394395;chrX_2395152_2395274 chrX_2387149_2387248;chrX_2395660_2395759 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AA CG9674,I_chr3L_16785451_16785540,I_chr3L_16785706_16785748,I_chr3L_16793055_16800660 chr3L - chr3L_16785451_16785540;chr3L_16785436_16785540 chr3L_16784791_16785540 chr3L_16785541_16785640 92.15 91.43 97.87 96.02 96.73 92.44 91.14 96.25 93.77 88.51 93.69 91.37 92.57 92.04 92.89 96.15 93.48 87.68 94.62 96.23 93.30 78.27 95.01 90.73 90.07 89.94 91.98 87.78 85.76 90.53 87.10 91.03 90.17 93.81 92.64 94.51 95.56 90.83 92.96 90.03 90.28 92.15 93.09 86.99 93.52 88.69 94.70 89.35 92.79 94.47 90.48 91.53 89.71 94.17 92.43 91.19 96.68 91.97 K alternative_acceptor Acon,I_chr2L_21168805_21168878,I_chr2L_21168805_21170166 chr2L + chr2L_21168805_21170190;chr2L_21168805_21168878 chr2L_21168805_21170166 chr2L_21168705_21168804;chr2L_21170191_21170266 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 K intron_retention CG7011 chr3L - chr3L_15156439_15156507 chr3L_15156438_15156439;chr3L_15156507_15156508 chr3L_15156087_15156438;chr3L_15156508_15156708 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA I_chr2L_6323791_6325172,Gef26,I_chr2L_6330719_6330770,I_chr2L_6330891_6331043 chr2L + chr2L_6330887_6331046 chr2L_6330887_6331043 chr2L_6330791_6330886;chr2L_6331047_6331143 86.36 90.00 NA NA NA NA 88.24 89.66 88.37 NA NA NA NA 86.36 NA NA NA NA NA 86.21 NA 83.33 92.86 NA NA NA 84.85 NA NA NA NA NA NA 86.21 NA 84.62 NA NA NA 85.19 NA 83.87 NA 87.10 NA 87.10 NA NA 94.87 NA 75.00 NA NA NA 85.71 NA 89.66 NA K jcn_only_AD Lip4 chr2L + chr2L_10530670_10530855 chr2L_10530676_10530855 chr2L_10530856_10531517;chr2L_10530314_10530669 45.02 44.44 47.50 44.15 46.56 40.31 49.58 46.97 41.52 40.85 57.29 49.21 50.00 44.23 47.53 46.26 52.17 42.60 96.50 48.46 50.00 43.19 40.48 44.31 44.97 59.18 39.53 40.41 49.44 46.15 51.26 40.37 50.00 39.90 43.81 43.04 44.74 45.41 41.70 33.20 50.72 46.30 46.28 49.81 45.02 50.71 41.47 44.83 50.17 45.77 50.00 47.98 40.55 41.13 44.83 42.65 42.71 41.70 K intron_retention Wsck chr3R - chr3R_20454795_20454856 chr3R_20454794_20454795;chr3R_20454856_20454857 chr3R_20454438_20454794;chr3R_20454857_20455999 0.00 0.00 0.00 0.00 0.00 0.00 4.88 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.19 0.00 0.00 0.00 0.00 2.00 2.78 0.00 1.92 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD gro chr3R + chr3R_21868657_21868716;chr3R_21868622_21868716 chr3R_21868626_21868716 chr3R_21868717_21869101;chr3R_21868588_21868621 45.00 NA NA NA NA NA NA NA 43.48 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 45.00 NA NA NA NA NA NA NA NA NA 62.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention fwd,I_chr3L_310787_310918,RI_chr3L_319514_319746 chr3L - chr3L_306918_306981 chr3L_306917_306918;chr3L_306981_306982 chr3L_306829_306917;chr3L_306982_307256 0.00 0.00 0.00 2.35 3.45 0.00 1.41 0.94 4.20 0.00 0.00 2.27 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 6.25 2.38 3.39 0.00 4.76 0.00 2.04 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.00 0.00 1.72 0.00 NA 0.00 2.00 0.00 0.00 3.85 K intron_retention Nhe3,I_chr2L_6680525_6680670 chr2L - chr2L_6680543_6680946 chr2L_6680542_6680543;chr2L_6680946_6680947 chr2L_6680346_6680542;chr2L_6680947_6680998 0.00 0.00 0.00 2.86 0.00 0.00 6.45 3.77 1.82 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 3.85 0.00 0.00 0.00 1.47 K intron_retention gem,I_chr2R_6015083_6015660,I_chr2R_6023182_6023246 chr2R + chr2R_6016535_6019126 chr2R_6016534_6016535;chr2R_6019126_6019127 chr2R_6016328_6016534;chr2R_6019127_6019199 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 1.08 6.90 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Tsp42Ee,RI_chr2R_2904593_2904783 chr2R + chr2R_2900059_2900537 chr2R_2900058_2900059;chr2R_2900537_2900538 chr2R_2900053_2900058;chr2R_2900538_2900621 60.00 NA 72.73 29.03 NA NA 70.59 54.55 60.00 66.67 NA 62.50 41.67 NA NA 43.75 53.85 NA 50.00 38.10 36.36 57.14 91.67 85.71 100.00 61.11 88.24 96.00 62.50 NA 45.45 NA 35.71 42.86 NA 87.50 60.00 NA 81.82 76.47 NA 59.26 60.00 NA 25.00 41.18 83.33 22.73 44.00 92.86 NA 75.00 NA NA 54.55 63.64 72.73 22.22 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814174;chr2R_2814327_2814894;chr2R_2815657_2816013;chr2R_2816342_2816577;chr2R_2816779_2817354;chr2R_2817604_2817753 chr2R_2814175_2814326;chr2R_2814895_2815656;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817355_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 50.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K mutually_exclusive RhoGAP71E,I_chr3L_15583097_15589765 chr3L + chr3L_15594396_15597935,chr3L_15598381_15599758 chr3L_15594396_15594734,chr3L_15595616_15599758 chr3L_15597936_15598380 chr3L_15594735_15595615 chr3L_15594333_15594395;chr3L_15599759_15600439 88.46 91.23 88.27 75.27 93.50 94.59 84.71 83.71 89.49 98.55 90.24 89.77 85.14 87.83 86.47 90.97 90.10 87.10 87.07 87.36 86.72 74.16 88.15 89.18 87.07 91.40 89.16 90.78 87.98 93.23 91.87 88.24 86.52 89.24 90.71 88.46 88.98 89.87 86.64 92.35 94.59 88.45 88.03 87.14 86.51 85.64 86.23 89.69 88.26 94.16 90.67 91.87 88.55 90.55 89.08 85.71 85.04 87.08 K intron_retention CG2186 chrX + chrX_10753438_10753632 chrX_10753437_10753438;chrX_10753632_10753633 chrX_10753231_10753437;chrX_10753633_10754930 12.50 13.79 3.45 16.00 0.00 14.81 33.33 11.11 5.26 4.92 5.88 16.67 5.56 0.00 5.88 23.53 5.26 14.29 37.04 2.90 0.00 44.09 10.91 8.93 11.76 12.50 23.53 21.15 28.81 21.74 10.53 39.13 20.78 6.25 9.68 24.24 13.04 10.26 16.67 18.03 31.43 10.20 6.67 22.73 11.32 29.41 4.76 25.74 4.35 30.77 28.57 30.77 3.57 27.27 7.41 22.22 0.00 8.82 K alternative_donor I_chr2L_8029734_8029787,Cka,CG7429 chr2L + chr2L_8030840_8032059;chr2L_8031338_8032059;chr2L_8031163_8032059;chr2L_8031309_8032059 chr2L_8031036_8032059 chr2L_8032060_8032641;chr2L_8030749_8030839 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.98 0.00 3.75 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 2.17 K intron_retention CG6659 chrX - chrX_18550304_18550356 chrX_18550303_18550304;chrX_18550356_18550357 chrX_18548840_18550303;chrX_18550357_18550678 1.19 0.98 0.00 0.81 0.00 0.00 1.44 1.27 0.41 1.82 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 1.14 3.08 14.41 4.20 2.44 6.49 1.75 9.09 4.17 3.41 0.00 5.26 2.22 1.00 0.00 2.63 10.34 3.30 1.09 3.23 1.52 3.12 2.04 0.00 2.27 0.95 1.98 1.43 3.06 0.00 1.19 1.49 3.61 0.00 0.00 0.00 5.43 0.00 0.00 K intron_retention CG1746,I_chr3R_27044771_27044867,I_chr3R_27044771_27044990,I_chr3R_27044771_27045027,RI_chr3R_27044771_27045110,I_chr3R_27044771_27045132,RI_chr3R_27044771_27045188,I_chr3R_27044771_27045193,RI_chr3R_27044771_27045268 chr3R - chr3R_27044771_27044895 chr3R_27044770_27044771;chr3R_27044895_27044896 chr3R_27044671_27044770;chr3R_27044896_27044967 44.44 NA 30.77 25.00 NA NA 50.00 40.91 41.38 NA NA 47.06 42.86 NA 25.00 38.89 17.65 63.64 46.15 34.48 25.00 NA 40.00 44.44 NA 36.36 50.00 45.45 75.00 50.00 50.00 45.45 36.36 50.00 NA 60.00 26.67 NA NA 50.00 46.67 36.36 NA NA 46.15 35.29 45.45 30.00 38.46 46.15 NA 41.67 NA 50.00 47.06 56.25 31.58 NA K jcn_only_AA ana2,MrgBP,CG8258 chr2R - chr2R_4786818_4786871 chr2R_4786821_4786871 chr2R_4786872_4787717;chr2R_4786228_4786817 41.38 46.34 33.33 29.73 43.48 27.59 42.86 37.04 43.55 NA 36.36 47.06 38.71 41.94 36.67 40.43 14.29 41.38 35.29 38.16 43.48 38.24 36.84 45.83 44.44 25.00 28.95 50.00 NA 45.16 20.00 32.26 38.30 35.00 44.44 37.93 39.29 65.52 34.21 48.33 44.44 38.33 45.45 28.00 55.26 44.44 41.67 41.38 41.79 38.81 48.98 57.14 35.90 42.22 51.35 42.11 44.00 40.54 K intron_retention I_chr2L_6956220_6956307,sip2_CG9188 chr2L - chr2L_6963856_6963938 chr2L_6963855_6963856;chr2L_6963938_6963939 chr2L_6963845_6963855;chr2L_6963939_6964073 89.29 90.00 94.29 97.37 80.00 85.19 97.67 94.44 95.92 84.62 100.00 95.45 85.71 95.45 96.43 95.35 95.00 86.21 90.32 94.55 87.50 90.91 82.93 86.67 93.33 98.04 97.30 93.75 89.39 87.88 86.11 86.21 89.71 91.30 96.55 82.35 89.29 85.19 86.67 74.51 90.91 91.67 83.33 70.97 78.05 88.89 78.57 91.23 87.72 79.31 81.25 75.00 88.89 90.91 88.57 85.19 88.89 95.65 K intron_retention LSm7 chr2L - chr2L_16742443_16742634 chr2L_16742442_16742443;chr2L_16742634_16742635 chr2L_16742326_16742442;chr2L_16742635_16742986 97.98 95.00 98.36 97.20 95.74 98.04 98.70 98.39 99.24 81.25 94.74 97.98 96.88 98.53 98.39 99.02 97.83 98.00 95.59 95.93 97.62 100.00 94.83 98.33 97.67 97.06 100.00 94.74 100.00 100.00 100.00 97.78 96.00 98.98 100.00 100.00 96.55 98.18 97.10 95.45 100.00 97.37 98.11 96.61 96.23 96.97 96.83 98.08 96.61 100.00 100.00 97.92 100.00 100.00 93.59 98.51 96.40 98.56 K intron_retention CG2818 chr2L + chr2L_3716304_3716388 chr2L_3716303_3716304;chr2L_3716388_3716389 chr2L_3716157_3716303;chr2L_3716389_3716773 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.23 4.44 NA NA 0.00 5.26 4.76 0.00 0.00 NA 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 NA 0.00 10.53 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 4.65 0.00 0.00 3.33 0.00 0.00 0.00 4.17 0.00 0.00 0.00 K jcn_only_AA Rpb4 chr3R - chr3R_14080914_14081038;chr3R_14080814_14081038 chr3R_14080959_14081038 chr3R_14081039_14081173;chr3R_14080097_14080813 2.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 4.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG42321,I_chr2R_9326329_9326436,I_chr2R_9326353_9326436 chr2R - chr2R_9303463_9306491;chr2R_9303121_9306491 chr2R_9303463_9304079,chr2R_9303121_9304079;chr2R_9305334_9306491 chr2R_9304080_9305333 chr2R_9302939_9303120;chr2R_9306492_9306590 66.67 62.50 71.43 55.56 75.00 44.44 62.50 80.00 64.71 66.67 75.00 83.33 33.33 60.00 57.14 92.86 66.67 75.00 50.00 72.73 50.00 75.00 63.64 58.33 50.00 25.00 60.00 100.00 60.00 50.00 62.50 83.33 62.50 71.43 50.00 100.00 66.67 57.14 62.50 75.00 80.00 53.33 75.00 42.86 71.43 87.50 66.67 87.50 69.23 83.33 87.50 83.33 88.89 71.43 42.86 63.64 53.33 83.33 K intron_retention Ranbp16,I_chrX_15826655_15827277 chrX - chrX_15822964_15823373 chrX_15822963_15822964;chrX_15823373_15823374 chrX_15822907_15822963;chrX_15823374_15823435 5.56 14.29 4.55 19.05 NA NA 26.09 5.56 12.20 NA 4.55 12.00 5.56 5.88 7.41 0.00 NA 0.00 4.76 8.82 6.67 NA 13.33 9.09 NA 18.18 5.71 NA 12.50 NA 4.76 NA NA 7.14 4.35 NA NA 0.00 0.00 8.33 NA 11.76 NA 0.00 0.00 0.00 0.00 15.00 0.00 0.00 7.41 NA 0.00 0.00 8.33 3.85 0.00 0.00 K intron_retention Indy chr3L - chr3L_18824129_18824192 chr3L_18824128_18824129;chr3L_18824192_18824193 chr3L_18823940_18824128;chr3L_18824193_18824341 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.60 0.00 0.00 0.00 1.20 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.36 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 K intron_retention CG4041 chrX - chrX_4809916_4809975 chrX_4809915_4809916;chrX_4809975_4809976 chrX_4809619_4809915;chrX_4809976_4810247 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.98 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Actn,I_chrX_1922061_1924247,I_chrX_1922784_1923807,I_chrX_1922784_1923873 chrX - chrX_1922061_1922697 chrX_1922060_1922061;chrX_1922697_1922698 chrX_1921968_1922060;chrX_1922698_1922783 1.82 5.00 0.00 1.92 0.00 7.14 26.32 0.00 6.56 0.00 0.00 4.00 0.00 0.00 3.23 3.45 3.85 0.00 0.00 1.54 0.00 7.14 0.00 2.08 0.00 0.00 0.00 0.00 0.00 11.11 6.67 0.00 5.41 8.51 2.86 0.00 0.00 0.00 0.00 1.82 11.76 3.51 3.85 4.17 3.45 7.55 3.57 5.41 8.00 4.65 1.54 0.00 0.00 0.00 4.76 2.50 0.00 0.00 K intron_retention inx2 chrX + chrX_6894297_6896804 chrX_6894296_6894297;chrX_6896804_6896805 chrX_6892991_6894296;chrX_6896805_6898198 12.97 13.79 13.04 14.63 12.50 14.29 13.33 13.16 8.22 8.89 20.00 12.90 12.50 5.56 14.29 18.52 17.65 13.04 6.06 13.04 26.32 9.09 11.76 5.41 12.50 5.00 10.53 33.33 NA 16.67 6.25 20.00 19.15 10.17 12.12 4.35 8.11 11.11 7.32 16.67 18.75 12.07 30.00 10.71 29.41 22.73 18.75 15.91 10.53 18.18 11.54 6.67 6.67 25.00 12.12 7.69 21.43 22.22 K alternative_donor CG4272 chr2L + chr2L_2365729_2366274;chr2L_2365391_2366274 chr2L_2365902_2366274 chr2L_2366275_2368213;chr2L_2365332_2365390 21.05 22.22 6.67 18.75 21.43 21.43 31.03 18.92 17.02 15.38 25.00 22.22 21.74 9.52 11.11 25.00 26.67 16.67 21.74 11.43 33.33 42.86 22.22 25.00 8.33 31.25 25.00 17.65 35.71 16.67 23.81 16.67 17.39 24.14 11.76 26.32 23.53 13.33 11.76 22.58 45.45 20.51 16.67 10.53 14.29 28.57 16.67 26.67 24.24 14.29 19.23 12.50 22.22 14.29 26.09 14.29 18.18 21.05 K intron_retention Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19545152_19547918 chr2R_19545151_19545152;chr2R_19547918_19547919 chr2R_19545126_19545151;chr2R_19547919_19547942 100.00 97.06 100.00 99.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.46 100.00 100.00 100.00 K cassette Actn,I_chrX_1922061_1924247,I_chrX_1922784_1923807,I_chrX_1922784_1923873 chrX - chrX_1922784_1924247;chrX_1922061_1924247 chrX_1922061_1923807,chrX_1922784_1923807;chrX_1923960_1924247 chrX_1923808_1923959 chrX_1921968_1922060;chrX_1924248_1924347 17.14 11.36 12.20 19.64 18.52 17.65 61.90 12.50 13.85 12.50 18.52 15.38 19.05 15.38 15.56 26.47 18.52 9.09 15.38 15.29 16.00 17.33 24.00 13.21 18.18 15.38 16.67 21.43 42.50 16.67 26.32 19.05 13.16 20.00 9.68 8.33 21.82 13.51 20.00 16.39 25.93 18.33 15.00 20.69 25.00 16.98 16.00 23.40 18.46 17.31 10.45 9.38 15.15 21.43 16.67 17.50 18.75 17.14 K intron_retention CrebB-17A,I_chrX_18265640_18266060,I_chrX_18265982_18266063 chrX + chrX_18269420_18269875 chrX_18269419_18269420;chrX_18269875_18269876 chrX_18269282_18269419;chrX_18269876_18270084 2.13 2.08 0.00 11.11 3.45 0.00 6.25 7.14 4.82 0.00 0.00 4.35 4.76 0.00 0.00 2.56 14.29 0.00 0.00 3.51 0.00 3.85 2.74 2.90 0.00 5.56 6.12 5.56 2.70 0.00 8.70 0.00 2.90 2.27 7.32 0.00 2.63 4.48 0.00 1.56 3.23 2.27 0.00 0.00 1.67 1.19 1.72 2.13 8.06 0.00 1.54 2.13 0.00 0.00 10.71 0.00 0.00 2.74 K intron_retention roq,CG4753 chr3L - chr3L_16367300_16367507 chr3L_16367299_16367300;chr3L_16367507_16367508 chr3L_16366649_16367299;chr3L_16367508_16367764 95.83 96.30 100.00 97.92 95.24 92.86 98.21 100.00 98.77 85.71 53.85 97.67 100.00 96.43 95.83 100.00 96.15 66.67 97.37 98.25 64.00 87.50 89.66 95.65 94.44 95.24 95.83 94.74 94.12 83.78 93.55 94.44 86.67 100.00 100.00 95.24 96.30 100.00 93.75 97.22 93.75 96.36 100.00 97.78 100.00 97.30 95.24 86.96 98.04 100.00 95.83 100.00 92.86 90.00 96.15 100.00 95.24 95.24 K alternative_donor 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5987603_5991760,I_chr2R_5988662_5991760,I_chr2R_5988666_5991760,I_chr2R_5988919_5991760,I_chr2R_5988931_5991760,I_chr2R_5990647_5991760,I_chr2R_5991249_5991760,I_chr2R_5991689_5991760,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5988603_5991760 chr2R_5988683_5991760 chr2R_5991761_5991860;chr2R_5988596_5988602 0.91 1.01 1.24 1.04 0.00 0.78 1.69 0.72 0.77 1.12 0.00 0.63 0.87 1.06 0.00 0.59 0.00 0.75 1.73 0.96 1.87 0.75 2.73 1.68 1.23 1.32 1.33 2.41 6.54 0.78 0.78 0.00 0.53 1.02 0.00 2.82 1.15 0.00 1.08 0.00 2.01 0.63 0.72 3.64 0.00 0.91 0.94 1.92 1.18 0.79 2.90 0.64 1.41 0.00 0.54 0.00 0.56 1.74 K cassette CG31243,CG42457 chr3R + chr3R_13837436_13838869 chr3R_13837436_13837817;chr3R_13837873_13838869 chr3R_13837818_13837872 chr3R_13837254_13837435;chr3R_13838870_13839405 87.50 NA NA 100.00 NA NA NA 77.78 76.19 NA NA 80.00 NA NA NA 100.00 NA NA NA 100.00 NA 60.87 90.00 NA NA NA NA NA NA 90.91 NA NA 81.25 90.91 NA 81.82 92.31 NA 91.67 92.86 NA 90.00 NA 83.33 55.56 72.73 NA 71.43 90.00 NA NA NA NA NA 64.29 NA NA 87.50 K alternative_acceptor Pur-alpha,I_chr4_581447_585166 chr4 + chr4_578927_580723 chr4_578927_580720 chr4_578907_578926;chr4_580724_580926 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Pp2A-29B,I_chr2L_8367210_8367311,I_chr2L_8369561_8369715 chr2L + chr2L_8367731_8367796 chr2L_8367730_8367731;chr2L_8367796_8367797 chr2L_8367312_8367730;chr2L_8367797_8367871 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA RpL27A,E_chr2L_4457411_4457977,I_chr2L_4458058_4458120 chr2L - chr2L_4457275_4457374;chr2L_4457319_4457374 chr2L_4457290_4457374 chr2L_4457375_4457410;chr2L_4457188_4457274 99.94 99.96 99.97 99.92 99.89 99.97 99.97 99.98 99.93 99.88 99.97 99.88 99.90 100.00 100.00 99.91 100.00 99.88 99.94 99.94 99.89 99.97 100.00 99.93 99.89 99.95 100.00 97.69 99.86 99.82 99.97 99.92 99.97 99.98 99.87 100.00 99.92 99.93 99.83 99.96 99.91 99.91 99.97 99.94 99.97 99.97 99.93 100.00 99.93 99.94 99.89 100.00 99.92 99.86 99.98 99.89 99.97 99.98 K intron_retention CG42511 chr3R + chr3R_5230812_5231457 chr3R_5230811_5230812;chr3R_5231457_5231458 chr3R_5230097_5230811;chr3R_5231458_5232783 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rpb11,I_chr2L_17410178_17410250,I_chr2L_17410178_17410317 chr2L - chr2L_17410178_17410251 chr2L_17410177_17410178;chr2L_17410251_17410252 chr2L_17410088_17410177;chr2L_17410252_17410350 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.94 3.61 9.46 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD RpL34a chr3R - chr3R_21884777_21884956 chr3R_21884777_21884941 chr3R_21884702_21884776;chr3R_21884957_21884989 8.29 NA 15.38 3.51 14.81 30.00 NA 3.45 16.67 NA 16.67 21.05 30.43 NA 11.76 NA 12.12 NA 17.86 4.76 12.50 0.00 NA 0.00 NA 8.57 NA 5.00 NA 0.00 19.35 NA 2.00 11.94 NA NA 9.52 NA NA 4.95 NA 8.00 6.45 0.00 3.33 NA NA 4.76 7.69 NA NA NA 4.44 NA 9.43 NA 14.58 4.35 K intron_retention Ark,I_chr2R_12909344_12909416,RI_chr2R_12912984_12913058 chr2R + chr2R_12912984_12913038 chr2R_12912983_12912984;chr2R_12913038_12913039 chr2R_12912884_12912983;chr2R_12913039_12913185 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.99 0.00 0.00 0.00 2.38 0.00 0.00 0.00 6.25 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RI_chr3R_7644683_7644880,CG6950,I_chr3R_7647556_7647628 chr3R - chr3R_7647542_7647697 chr3R_7647542_7647628 chr3R_7647456_7647541;chr3R_7647698_7647728 100.00 NA NA NA NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K alternative_donor nimB5,Cyp28a5 chr2L + chr2L_13970867_13971138 chr2L_13970871_13971138 chr2L_13971139_13971681;chr2L_13970488_13970866 0.82 0.00 0.75 0.00 0.78 0.00 1.74 0.75 0.86 0.00 0.73 1.47 0.67 0.91 0.71 2.33 1.54 0.68 1.01 0.85 1.65 0.00 1.06 0.82 1.41 1.15 1.19 0.00 3.45 1.37 4.12 1.89 1.69 0.70 0.00 0.00 0.49 0.00 0.66 1.79 0.00 1.27 1.10 1.92 2.50 0.00 1.30 0.00 1.05 0.00 0.74 0.00 1.41 0.00 0.75 0.87 2.21 0.00 K alternative_donor CG41378,I_chr2RHet_1545717_1621473,I_chr2RHet_1545717_1621569,I_chr2RHet_1606049_1607768,RI_chr2RHet_1606049_1621284,noncoding_9480 chr2RHet - chr2RHet_1606049_1621473;chr2RHet_1606049_1621569 chr2RHet_1606049_1621636 chr2RHet_1605949_1606048;chr2RHet_1621637_1621662 0.00 5.88 0.00 0.00 0.00 0.00 0.00 2.94 2.56 NA 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 5.26 9.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.11 0.00 7.14 12.50 3.12 0.00 0.00 0.00 0.00 9.09 7.14 11.11 0.00 0.00 7.14 11.11 6.25 0.00 8.33 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 6.25 14.29 K intron_retention RE_chr2R_18741940_18741998,RpL23 chr2R + chr2R_18741936_18742002 chr2R_18741935_18741936;chr2R_18742002_18742003 chr2R_18741908_18741935;chr2R_18742003_18742052 58.01 61.11 50.00 81.82 58.82 64.71 80.49 53.06 76.06 42.86 68.42 68.29 45.00 55.17 57.50 60.00 62.96 53.85 70.97 66.67 66.67 26.32 78.79 58.33 58.82 77.19 86.27 71.43 90.41 30.00 60.87 20.00 8.82 56.10 40.00 44.00 75.76 NA 57.69 17.28 33.33 56.52 58.62 52.78 30.77 22.45 57.14 13.33 61.36 50.00 67.86 52.38 46.00 58.33 70.97 53.57 59.46 13.33 K jcn_only_AA rtGEF,I_chr2L_20359856_20360012 chr2L + chr2L_20356802_20360012 chr2L_20356802_20356875 chr2L_20356590_20356801 4.00 1.41 0.79 1.92 1.92 2.17 6.25 0.70 2.15 8.82 3.25 2.87 7.41 3.12 2.88 3.37 0.97 1.96 1.09 0.91 1.79 14.69 4.12 1.71 6.94 8.20 8.16 10.13 5.50 10.45 7.22 3.97 17.98 2.80 6.32 15.57 6.18 4.76 4.15 5.08 5.84 4.00 5.56 5.67 3.17 3.76 0.00 6.73 1.98 5.99 8.52 5.88 0.00 3.65 4.96 2.23 1.31 4.07 K alternative_last_exon ETHR chr3R + chr3R_17085610_17089741 chr3R_17085610_17087541 chr3R_17089742_17090954 chr3R_17087542_17089738 chr3R_17085600_17085609 35.71 28.57 40.00 33.33 50.00 40.00 14.29 50.00 33.33 66.67 33.33 50.00 40.00 33.33 40.00 40.00 33.33 33.33 60.00 35.71 20.00 23.33 35.71 36.36 28.57 25.00 36.36 35.71 38.46 30.00 50.00 42.86 30.00 33.33 30.00 46.67 38.46 30.00 36.36 42.86 25.00 36.36 25.00 33.33 33.33 26.32 36.36 38.46 36.36 31.25 40.00 40.00 37.50 33.33 37.50 27.27 33.33 40.00 K mutually_exclusive Cnx99A,I_chr3R_25142581_25142644,I_chr3R_25144335_25145173,I_chr3R_25145243_25145309,I_chr3R_25145256_25145426 chr3R - chr3R_25141892_25142225,chr3R_25142352_25142441 chr3R_25141892_25141958,chr3R_25142088_25142441 chr3R_25142226_25142351 chr3R_25141959_25142087 chr3R_25141667_25141891;chr3R_25142442_25142582 100.00 100.00 100.00 99.79 100.00 100.00 99.51 100.00 100.00 100.00 100.00 99.69 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.74 99.82 100.00 99.70 100.00 99.60 100.00 100.00 100.00 100.00 99.66 100.00 99.80 99.66 99.21 100.00 100.00 99.84 99.82 99.62 99.86 100.00 99.57 99.57 99.78 99.79 100.00 100.00 100.00 100.00 100.00 99.70 100.00 100.00 100.00 100.00 100.00 K intron_retention CG14221,CG14222,e(y)3 chrX - chrX_19513425_19513507 chrX_19513424_19513425;chrX_19513507_19513508 chrX_19513217_19513424;chrX_19513508_19513540 21.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 26.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Hmgs chr2R + chr2R_12224369_12226951 chr2R_12224368_12224369;chr2R_12226951_12226952 chr2R_12223995_12224368;chr2R_12226952_12228760 0.00 0.00 0.00 2.63 0.00 2.17 1.15 2.22 5.04 0.00 6.06 3.16 0.00 4.00 1.64 4.48 0.00 2.38 3.23 3.00 2.33 0.00 2.00 0.00 0.00 3.08 0.00 0.00 0.72 2.50 2.41 0.00 0.00 4.21 0.00 0.00 0.00 2.33 4.44 0.00 0.00 3.67 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 3.51 2.13 0.00 0.00 0.00 0.00 1.75 0.00 N cassette dco,RI_chr3R_26883647_26884261,RI_chr3R_26883651_26886096,I_chr3R_26884350_26884670,I_chr3R_26884350_26886671,I_chr3R_26884350_26886791,RI_chr3R_26884365_26886096,I_chr3R_26884365_26886798 chr3R - chr3R_26883651_26886798;chr3R_26883651_26886096 chr3R_26883651_26884261;chr3R_26884350_26886096,chr3R_26884350_26886798 chr3R_26884262_26884349 chr3R_26883551_26883650;chr3R_26886799_26886891 96.24 97.73 98.86 86.50 95.83 93.51 88.75 97.06 95.14 96.88 99.05 98.81 79.44 96.59 99.07 95.21 95.12 97.87 95.00 89.34 100.00 93.08 96.24 100.00 95.08 91.09 94.95 98.82 63.24 96.90 98.36 98.84 94.38 95.86 97.40 94.62 94.62 97.26 97.65 96.50 94.57 95.81 93.88 97.65 93.48 97.78 98.91 95.73 96.53 98.67 97.22 94.44 93.59 100.00 97.44 95.71 98.70 95.24 K alternative_acceptor CG10979,I_chr3R_1621563_1621607,RI_chr3R_1621781_1621856 chr3R + chr3R_1621563_1621632 chr3R_1621563_1621607 chr3R_1621463_1621562;chr3R_1621633_1621707 0.00 0.00 0.00 0.00 0.00 3.57 0.00 1.72 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 4.17 NA 0.00 0.00 0.00 0.00 0.00 N multi_cassette CG10576,I_chr3L_5756877_5757511,snoRNA:Psi28S-1837c,snoRNA:Psi28S-1837b,snoRNA:Psi28S-1837a,psnoRNA:CG10576-a,I_chr3L_5758117_5758186 chr3L - chr3L_5756877_5758186 chr3L_5756877_5757533;chr3L_5757697_5757758;chr3L_5757896_5758186 chr3L_5757534_5757696;chr3L_5757759_5757895 chr3L_5756777_5756876;chr3L_5758187_5758284 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG17494 chr2L + chr2L_22477415_22477476 chr2L_22477415_22477473 chr2L_22476854_22477414;chr2L_22477477_22478491 94.12 96.77 100.00 93.44 96.00 93.10 95.06 97.37 95.19 90.91 95.24 98.08 89.19 100.00 93.55 93.15 97.30 95.83 95.92 93.55 100.00 75.00 97.22 93.75 95.00 90.91 97.14 88.46 90.91 93.75 97.14 93.33 93.33 91.55 96.43 87.50 95.83 94.12 94.74 92.11 100.00 96.55 90.00 94.12 90.00 82.61 95.24 100.00 91.89 93.33 92.11 100.00 94.12 85.71 93.18 96.00 90.91 94.12 K alternative_donor CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1666219_1670203;chr2R_1666219_1670219;chr2R_1666219_1669803;chr2R_1666219_1670281 chr2R_1666219_1670325 chr2R_1666119_1666218;chr2R_1670326_1670328 3.12 0.00 0.00 7.32 16.67 4.00 6.25 6.25 2.56 0.00 4.17 1.59 10.00 3.12 7.69 1.64 10.26 3.12 7.69 7.37 2.70 4.17 3.33 0.00 5.26 7.14 0.00 12.50 4.00 0.00 2.04 5.88 2.17 7.50 0.00 0.00 0.00 0.00 0.00 8.16 0.00 2.53 2.94 12.50 5.88 8.33 0.00 3.33 6.52 0.00 0.00 0.00 5.00 0.00 0.00 0.00 6.25 3.57 K alternative_acceptor I_chr2L_100704_100835,CG11377 chr2L + chr2L_103435_103877 chr2L_103435_103515 chr2L_103006_103434;chr2L_103878_104103 79.17 72.73 83.12 74.77 69.23 81.16 78.81 72.22 72.83 84.54 65.43 73.38 81.58 85.71 78.02 84.26 84.62 89.47 82.00 81.33 73.85 55.93 75.31 72.73 92.16 91.86 58.90 49.56 89.69 82.89 79.81 77.17 78.12 82.01 74.63 77.78 75.28 76.27 79.17 78.05 82.54 81.82 87.14 88.00 78.95 89.04 82.02 77.88 80.34 67.02 77.53 78.95 91.59 79.27 83.81 78.72 80.26 90.72 K intron_retention dnc,I_chrX_3150245_3150319,I_chrX_3150351_3152643 chrX + chrX_3232411_3232480 chrX_3232410_3232411;chrX_3232480_3232481 chrX_3232248_3232410;chrX_3232481_3232849 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 14.29 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA K alternative_acceptor I_chr3R_25628402_25628511,ncd,I_chr3R_25632049_25632125,RI_chr3R_25658089_25658914 chr3R - chr3R_25632049_25632125 chr3R_25632067_25632125 chr3R_25632126_25632194;chr3R_25631983_25632048 99.40 99.25 98.92 99.03 100.00 100.00 98.46 98.98 99.42 98.08 98.59 99.40 100.00 100.00 98.90 98.39 98.51 100.00 100.00 99.44 100.00 97.26 97.56 99.37 98.91 100.00 100.00 100.00 100.00 100.00 98.36 99.09 100.00 99.13 98.82 98.04 99.56 99.31 99.47 98.75 97.98 99.44 98.72 100.00 99.24 100.00 100.00 100.00 99.37 100.00 99.36 100.00 100.00 98.18 100.00 100.00 100.00 99.08 K alternative_donor Hsc70Cb chr3L + chr3L_14030212_14030580 chr3L_14030237_14030580 chr3L_14030581_14030850;chr3L_14030158_14030211 100.00 NA 92.31 96.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 91.67 100.00 96.30 100.00 100.00 93.33 100.00 NA 92.31 100.00 100.00 100.00 90.91 NA 100.00 100.00 100.00 100.00 100.00 94.74 94.74 100.00 100.00 NA NA NA 94.74 100.00 95.24 100.00 100.00 NA 94.12 NA 95.65 95.24 NA 100.00 NA NA NA 100.00 NA 85.71 100.00 K alternative_acceptor CG40127,I_chr2R_75348_75450 chr2R - chr2R_75348_75450 chr2R_75385_75450 chr2R_75451_75519;chr2R_75282_75347 100.00 100.00 100.00 100.00 100.00 100.00 99.69 99.68 100.00 100.00 100.00 99.63 100.00 100.00 100.00 99.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.16 100.00 100.00 98.48 99.33 100.00 97.87 100.00 98.98 100.00 100.00 100.00 98.65 99.33 98.99 99.62 100.00 100.00 100.00 100.00 100.00 100.00 99.67 100.00 99.38 100.00 98.81 100.00 99.27 100.00 100.00 99.22 K intron_retention I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10065344,I_chr2R_10064197_10068715,I_chr2R_10067437_10068984,I_chr2R_10068194_10068715 chr2R + chr2R_10064197_10064679 chr2R_10064196_10064197;chr2R_10064679_10064680 chr2R_10064117_10064196;chr2R_10064680_10064982 3.39 5.26 3.45 7.55 2.70 4.65 13.64 8.20 3.12 0.00 5.26 1.71 0.00 8.00 7.27 5.00 10.81 0.00 5.77 4.35 2.50 3.39 1.92 2.90 4.62 0.00 1.43 2.63 3.57 2.50 4.44 1.82 5.56 5.41 3.23 4.62 0.98 3.28 0.00 1.82 2.38 6.48 7.69 1.54 3.08 3.39 7.41 6.03 5.26 4.00 5.06 0.00 0.00 0.00 4.76 1.96 0.00 5.56 K intron_retention CG7720 chr3R - chr3R_14585921_14585986 chr3R_14585920_14585921;chr3R_14585986_14585987 chr3R_14585778_14585920;chr3R_14585987_14586039 13.75 15.00 26.67 25.00 NA 23.08 NA 20.00 21.43 NA NA 30.00 NA 41.67 NA NA NA NA NA 8.33 NA 0.00 12.50 NA NA NA 31.25 7.14 NA 17.65 69.23 NA 4.76 NA NA NA 11.11 31.25 7.69 7.41 NA 23.81 NA 3.45 9.09 NA 8.33 NA 26.32 0.00 NA NA 0.00 NA 25.00 NA 0.00 5.88 K intron_retention mld,atl chr3R + chr3R_20459222_20459279 chr3R_20459221_20459222;chr3R_20459279_20459280 chr3R_20459155_20459221;chr3R_20459280_20460430 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 1.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG7530,I_chr3R_10556352_10557136,eff chr3R - chr3R_10556352_10557105;chr3R_10556352_10557130;chr3R_10556352_10557126;chr3R_10556352_10557198 chr3R_10556352_10557148 chr3R_10556252_10556351;chr3R_10557199_10557231 0.00 0.00 0.00 2.94 0.00 0.00 0.00 1.52 0.00 0.00 0.00 2.08 0.00 0.00 2.50 1.92 0.00 0.00 2.56 2.13 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 3.45 0.00 0.00 0.00 2.22 1.79 0.00 0.00 0.00 4.17 2.94 1.27 0.00 1.43 3.23 2.33 0.00 1.52 0.00 0.00 2.44 0.00 0.00 0.00 1.72 0.00 0.00 3.57 0.00 0.98 K intron_retention Eaf,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3293636_3293710 chr2R_3293635_3293636;chr2R_3293710_3293711 chr2R_3293543_3293635;chr2R_3293711_3294565 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor shi,RI_chrX_15786633_15786860,RE_chrX_15793108_15795563 chrX + chrX_15786603_15786860;chrX_15786285_15786860;chrX_15786615_15786860;chrX_15786200_15786860;chrX_15786394_15786860 chrX_15786474_15786860 chrX_15786861_15786960;chrX_15786192_15786199 70.00 57.14 57.89 55.17 62.50 63.64 80.00 66.67 59.18 100.00 50.00 62.50 75.00 72.73 80.00 72.50 65.00 85.71 54.84 56.41 53.85 70.00 80.00 81.82 75.00 55.56 90.00 100.00 58.33 73.33 73.33 71.43 52.63 57.69 100.00 75.00 87.50 100.00 100.00 51.72 66.67 55.00 61.11 52.63 71.43 58.33 71.43 59.09 68.29 80.00 93.33 100.00 66.67 100.00 66.67 100.00 80.00 40.00 K intron_retention I_chr2L_476332_525391,ush chr2L + chr2L_536967_537036 chr2L_536966_536967;chr2L_537036_537037 chr2L_536023_536966;chr2L_537037_537431 0.87 2.25 0.00 1.57 0.00 0.00 0.00 1.45 0.67 0.00 0.00 1.80 3.23 0.00 1.94 0.00 3.28 0.00 0.00 1.39 1.67 0.00 2.46 0.00 1.06 1.16 3.92 2.59 0.00 1.73 0.00 0.00 0.87 1.42 1.16 1.57 0.87 0.00 0.70 0.30 0.61 1.22 0.00 0.00 1.35 0.89 2.86 0.00 3.24 1.98 0.00 1.85 0.00 1.98 0.00 0.00 2.22 1.01 K intron_retention I_chr2L_114992_156735,RI_chr2L_114992_155545,RI_chr2L_114992_155566,I_chr2L_114992_155637,I_chr2L_114992_156175,RI_chr2L_155430_155637,CG11455,CG3436 chr2L + chr2L_155430_155493 chr2L_155429_155430;chr2L_155493_155494 chr2L_155424_155429;chr2L_155494_155784 100.00 100.00 100.00 100.00 100.00 100.00 98.84 100.00 98.59 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 96.43 100.00 98.44 100.00 100.00 95.00 96.97 100.00 97.44 100.00 100.00 100.00 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.78 K intron_retention CG6340,I_chrX_15402291_15403750 chrX + chrX_15377454_15379154 chrX_15377453_15377454;chrX_15379154_15379155 chrX_15377232_15377453;chrX_15379155_15379301 55.00 44.00 73.33 30.00 55.56 61.90 66.67 61.29 62.16 70.00 58.33 54.55 69.23 64.29 69.23 41.67 69.23 60.00 58.82 55.10 64.29 40.62 48.28 50.00 72.73 63.64 80.95 83.33 20.83 50.00 55.00 53.57 45.00 75.86 40.00 68.42 43.33 64.71 54.29 51.43 62.50 54.55 85.71 50.00 40.54 53.57 43.75 40.00 62.50 40.00 38.71 50.00 44.00 34.62 58.82 43.48 60.00 41.46 K intron_retention CG9795,I_chr3R_150391_150451 chr3R + chr3R_150534_150594 chr3R_150533_150534;chr3R_150594_150595 chr3R_150452_150533;chr3R_150595_151179 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 K intron_retention UGP chr3L - chr3L_9347175_9351714 chr3L_9347174_9347175;chr3L_9351714_9351715 chr3L_9347133_9347174;chr3L_9351715_9352031 0.00 0.00 0.00 3.12 NA 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 NA 12.50 5.71 0.00 0.00 0.00 2.78 7.14 0.00 0.00 0.00 0.00 0.00 0.00 5.56 6.90 0.00 0.00 3.23 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chrX_13751182_13777268,mamo,C_chrX_13795677_13808662 chrX - chrX_13765302_13777268 chrX_13765301_13765302;chrX_13777268_13777269 chrX_13765221_13765301;chrX_13777269_13777368 11.52 NA NA NA NA NA NA NA 9.52 NA NA 61.11 NA NA NA NA NA NA NA 4.76 NA 18.18 4.76 0.00 25.00 NA NA NA 23.08 NA NA NA 6.90 14.29 0.00 14.29 8.82 15.79 14.81 3.85 12.50 10.53 NA NA 9.09 NA 12.50 9.52 18.18 NA 12.50 NA NA NA NA NA NA 3.85 K jcn_only_AD chic,RI_chr2L_5976783_5980950,I_chr2L_5979705_5979818,I_chr2L_5979705_5979941,RI_chr2L_5979705_5979951,I_chr2L_5979705_5979953,I_chr2L_5979705_5980025,I_chr2L_5979705_5980213,I_chr2L_5979705_5980370,I_chr2L_5979705_5980558,I_chr2L_5979705_5980632,I_chr2L_5979705_5980639,RI_chr2L_5979705_5980734 chr2L - chr2L_5979705_5980208;chr2L_5979705_5979959 chr2L_5979705_5979939 chr2L_5979605_5979704;chr2L_5980209_5980475 99.22 99.00 99.22 99.32 98.82 99.14 99.42 99.30 99.13 99.29 99.74 99.13 99.26 99.38 98.31 98.83 99.24 99.21 98.93 99.04 99.16 99.16 99.33 99.05 99.78 99.42 99.27 99.07 98.23 99.70 98.97 99.65 99.00 99.27 99.26 98.70 99.46 99.68 98.65 99.59 99.23 99.16 99.08 99.08 99.43 99.28 99.16 99.32 99.26 99.37 99.40 99.09 99.22 99.19 99.02 98.94 99.33 99.33 K jcn_only_AD Atpalpha,I_chr3R_16783890_16785070,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16783540_16784958 chr3R_16783890_16784958 chr3R_16784959_16785012;chr3R_16783510_16783539 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 98.28 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention CG6782,CG6783 chr3R - chr3R_7390094_7390161 chr3R_7390093_7390094;chr3R_7390161_7390162 chr3R_7389784_7390093;chr3R_7390162_7390433 0.61 0.61 0.44 0.25 0.63 0.66 0.67 0.36 0.39 1.39 0.38 0.47 0.79 0.44 0.35 0.55 0.36 0.60 0.26 0.53 0.32 1.31 0.90 0.52 1.16 0.99 0.83 1.42 3.85 0.91 0.41 0.88 1.38 0.35 1.26 1.57 0.69 0.50 0.72 1.07 1.81 0.47 0.00 0.48 1.17 0.82 0.58 1.56 0.49 0.49 0.85 0.90 0.49 0.45 0.66 0.40 0.38 1.24 K intron_retention CG5027 chr3L + chr3L_16222744_16222800 chr3L_16222743_16222744;chr3L_16222800_16222801 chr3L_16222505_16222743;chr3L_16222801_16223424 0.00 0.00 0.00 8.89 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 2.04 0.00 10.34 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.86 K multi_cassette CG40263,F_chr2RHet_1265687_1293040,F_chr2RHet_1298459_1298703,F_chr2RHet_1298459_1311408,F_chr2RHet_1298885_1299622,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1265687_1324445 chr2RHet_1265687_1286307;chr2RHet_1286572_1293055;chr2RHet_1293175_1293235;chr2RHet_1293394_1324445 chr2RHet_1286308_1286571;chr2RHet_1293056_1293174;chr2RHet_1293236_1293393 chr2RHet_1265587_1265686;chr2RHet_1324446_1324530 45.74 43.75 50.00 36.36 55.56 42.11 40.00 46.03 50.00 50.00 NA 42.86 60.00 58.82 61.11 43.75 71.43 66.67 54.55 82.61 50.00 33.33 41.67 37.50 29.41 40.00 66.67 20.00 22.22 71.43 66.67 42.86 28.57 56.41 33.33 22.22 50.00 60.00 45.45 63.16 12.50 55.88 53.33 53.33 20.00 40.00 42.86 80.00 51.52 18.18 64.71 50.00 22.22 40.00 75.00 35.71 25.00 16.67 K jcn_only_AD rtet,I_chr3R_16934777_16934968,RE_chr3R_16939259_16939667 chr3R + chr3R_16934773_16934968 chr3R_16934777_16934968 chr3R_16934969_16935068;chr3R_16934677_16934772 0.00 1.27 0.00 0.64 0.00 0.00 0.70 0.55 0.35 2.27 0.00 0.00 0.93 0.00 0.66 0.70 0.78 0.00 0.00 0.00 0.72 0.00 0.62 0.00 0.93 0.00 1.81 0.00 0.00 1.11 3.23 0.00 0.00 0.00 0.00 0.00 0.44 0.61 0.44 0.56 0.00 0.00 0.00 0.97 0.85 0.70 0.72 0.00 0.00 1.00 0.00 0.00 1.87 0.88 0.70 0.00 0.00 0.00 K intron_retention Galpha49B,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8503587_8503667 chr2R_8503586_8503587;chr2R_8503667_8503668 chr2R_8503412_8503586;chr2R_8503668_8503919 95.33 91.30 89.71 96.84 91.84 90.20 91.55 95.65 97.54 97.92 94.92 94.69 98.15 87.50 95.52 95.18 97.78 90.57 92.86 96.95 97.73 95.16 96.83 92.16 100.00 97.92 96.08 97.30 98.44 95.52 98.15 94.74 93.97 92.39 90.91 95.74 93.94 97.30 97.30 91.20 97.87 95.33 93.02 94.67 93.75 95.52 94.44 99.32 95.33 95.83 92.31 95.65 95.45 92.31 97.30 83.87 92.59 98.88 K intron_retention His2Av,E_chr3R_22693209_22693387 chr3R + chr3R_22692818_22693130 chr3R_22692817_22692818;chr3R_22693130_22693131 chr3R_22692597_22692817;chr3R_22693131_22693208 2.04 2.22 0.82 1.36 1.42 1.60 3.24 2.04 2.35 2.40 1.96 2.09 1.59 1.79 1.44 2.35 2.56 2.32 2.63 2.14 0.00 0.93 2.67 1.98 0.96 1.60 2.63 5.70 3.35 1.19 2.37 1.94 1.96 1.75 1.59 3.49 1.43 2.70 1.76 2.40 3.62 1.94 2.44 2.27 0.82 2.81 2.31 2.67 1.53 1.30 1.75 2.11 2.53 1.87 2.41 1.82 1.79 3.41 K cassette cno,I_chr3R_999718_999986,I_chr3R_999737_999777 chr3R - chr3R_999718_999986 chr3R_999718_999777;chr3R_999900_999986 chr3R_999778_999899 chr3R_999637_999717;chr3R_999987_1000086 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.70 99.28 100.00 100.00 100.00 100.00 100.00 100.00 98.55 100.00 100.00 98.25 99.41 100.00 98.68 100.00 100.00 100.00 100.00 98.92 100.00 100.00 100.00 100.00 100.00 99.25 100.00 100.00 100.00 100.00 100.00 99.20 98.56 100.00 100.00 97.56 100.00 98.72 98.80 100.00 98.97 100.00 98.64 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention ras chrX + chrX_10638741_10638811 chrX_10638740_10638741;chrX_10638811_10638812 chrX_10638714_10638740;chrX_10638812_10638943 96.00 95.65 100.00 97.67 100.00 95.83 96.43 100.00 96.49 88.89 100.00 93.88 100.00 94.74 100.00 97.73 100.00 94.74 100.00 92.11 100.00 92.86 100.00 95.24 100.00 88.89 100.00 100.00 95.83 94.74 100.00 90.91 91.18 100.00 93.10 95.45 96.15 100.00 94.44 96.77 84.21 100.00 95.24 96.00 90.91 84.21 100.00 92.86 95.00 95.24 100.00 100.00 NA 100.00 89.29 NA 92.31 83.33 K intron_retention La chr2L - chr2L_20348557_20348614 chr2L_20348556_20348557;chr2L_20348614_20348615 chr2L_20348542_20348556;chr2L_20348615_20348878 99.59 99.44 99.36 100.00 100.00 99.04 100.00 99.09 99.73 99.14 100.00 100.00 99.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.26 99.61 99.53 99.17 99.32 98.78 99.37 98.86 99.35 100.00 100.00 99.52 99.29 99.28 100.00 99.32 100.00 99.36 99.60 99.14 99.70 99.19 98.96 100.00 99.59 99.53 100.00 99.73 100.00 100.00 99.32 99.44 99.42 99.37 98.79 99.71 99.66 K intron_retention I_chr2R_5171635_5172166,TXBP181-like chr2R - chr2R_5177678_5177730 chr2R_5177677_5177678;chr2R_5177730_5177731 chr2R_5176866_5177677;chr2R_5177731_5178785 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 5.00 0.00 0.00 10.81 10.53 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 3.45 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 K alternative_donor CG3829,I_chr2R_20874677_20875710,I_chr2R_20874711_20875717,I_chr2R_20875172_20875710,I_chr2R_20875497_20875710 chr2R + chr2R_20875497_20875710;chr2R_20875350_20875710;chr2R_20874711_20875710 chr2R_20875172_20875710 chr2R_20875711_20875810;chr2R_20874611_20874710 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 25.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 12.50 0.00 NA NA 0.00 33.33 0.00 0.00 N alternative_acceptor Hyperkinetic,RI_chrX_10148341_10148752,I_chrX_10148341_10149525,CG34319,noncoding_22888,I_chrX_10152994_10153223 chrX - chrX_10148341_10149525 chrX_10148427_10149525 chrX_10149526_10149619;chrX_10148241_10148340 71.43 NA NA NA NA NA 94.12 69.23 NA 71.43 NA 100.00 NA NA NA NA NA NA NA 55.56 NA 83.33 55.56 83.33 NA NA NA NA NA NA NA NA 71.43 NA NA 83.33 NA NA 55.56 53.33 NA NA NA 83.33 NA NA NA NA 66.67 NA 80.00 NA NA NA NA NA NA NA N intron_retention CG4829,I_chrX_16717240_16717547 chrX + chrX_16711168_16717135 chrX_16711167_16711168;chrX_16717135_16717136 chrX_16711045_16711167;chrX_16717136_16717239 0.00 NA NA 0.00 NA NA 0.00 3.85 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 5.88 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG5482,I_chr2R_14519136_14519239 chr2R - chr2R_14519136_14519254;chr2R_14519136_14519239 chr2R_14519136_14519367 chr2R_14519036_14519135;chr2R_14519368_14519403 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.39 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 NA 3.57 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.19 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RhoGAP15B chrX + chrX_16849304_16849361 chrX_16849303_16849304;chrX_16849361_16849362 chrX_16848780_16849303;chrX_16849362_16850003 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.82 0.00 0.00 0.00 1.16 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette I_chr3R_1303481_1304607,CG31550 chr3R + chr3R_1312607_1313556 chr3R_1312607_1312772;chr3R_1312900_1313556 chr3R_1312773_1312899 chr3R_1312598_1312606;chr3R_1313557_1314029 80.00 82.61 80.95 73.53 89.47 82.61 88.89 88.89 88.10 69.23 93.75 75.68 63.16 94.74 88.00 86.11 85.71 92.59 93.75 80.77 88.89 51.28 77.78 76.00 69.23 73.68 85.71 80.00 75.00 84.62 50.00 81.48 78.26 93.75 61.29 42.86 61.11 87.50 56.76 65.57 62.50 82.00 91.67 82.05 68.89 73.91 67.74 73.33 83.72 69.44 76.92 71.43 84.21 61.29 87.50 76.47 76.32 82.35 K multi_cassette CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_261460_265805 chr4_261460_263113;chr4_263306_263795;chr4_264212_264259;chr4_264375_265805 chr4_263114_263305;chr4_263796_264211;chr4_264260_264374 chr4_261360_261459;chr4_265806_265905 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG12734,I_chr3L_3183812_3183932,I_chr3L_3184645_3185360 chr3L + chr3L_3184038_3184251 chr3L_3184038_3184248 chr3L_3183933_3184037;chr3L_3184252_3184644 65.22 47.17 66.67 64.52 59.38 53.85 61.54 64.29 65.33 70.00 NA 70.59 70.00 47.62 54.76 68.97 NA 52.38 61.54 65.08 62.50 63.64 69.89 57.38 80.65 NA 65.33 75.47 65.12 78.95 67.74 80.00 64.29 67.44 58.06 71.43 67.05 53.23 63.48 80.00 58.33 59.38 73.91 53.33 72.73 67.35 68.09 42.86 66.00 66.10 64.38 54.84 62.96 66.00 68.97 69.57 74.42 62.96 K intron_retention CG7420 chr2L - chr2L_1502185_1502610 chr2L_1502184_1502185;chr2L_1502610_1502611 chr2L_1501933_1502184;chr2L_1502611_1502878 5.56 NA NA NA NA NA NA NA 5.00 NA NA 6.67 NA NA NA NA NA NA 7.69 0.00 NA NA 0.00 6.25 NA NA NA NA NA NA NA NA NA 0.00 NA NA 4.76 5.56 0.00 0.00 NA 13.04 NA NA NA NA NA 11.76 0.00 NA 8.00 NA NA NA NA NA 7.14 13.33 K intron_retention CG14407,CG32590 chrX - chrX_14731787_14731846 chrX_14731786_14731787;chrX_14731846_14731847 chrX_14731381_14731786;chrX_14731847_14732282 1.98 0.00 2.60 2.78 0.00 2.44 2.04 3.80 2.76 0.00 0.00 2.05 0.00 0.00 4.05 6.15 0.00 2.78 3.33 1.16 2.22 0.00 1.90 3.03 0.00 0.00 4.60 3.57 13.89 0.00 3.85 0.00 0.00 3.19 1.85 3.28 2.27 1.11 0.77 4.30 0.00 2.81 0.00 0.00 3.33 0.00 0.00 4.00 3.08 1.98 3.33 0.00 0.00 0.00 2.44 1.89 1.18 5.00 K intron_retention CG34413,I_chr2R_20771136_20772048,I_chr2R_20772104_20773774,RI_chr2R_20772104_20774745,C_chr2R_20772691_20773500,I_chr2R_20773500_20774745 chr2R + chr2R_20771258_20774745 chr2R_20771257_20771258;chr2R_20774745_20774746 chr2R_20771197_20771257;chr2R_20774746_20774845 40.48 48.28 45.45 41.67 40.74 40.54 45.95 41.51 32.89 58.33 42.86 58.54 44.00 50.00 41.94 43.90 57.14 48.28 47.37 42.03 33.33 28.00 31.48 32.65 39.29 42.42 47.06 76.67 59.62 29.73 25.00 37.04 26.53 40.48 38.46 24.24 41.82 54.29 37.84 30.53 29.55 34.85 36.84 23.21 25.81 26.09 44.00 20.83 50.91 39.02 38.10 42.86 32.35 34.62 43.33 38.64 36.67 12.50 K jcn_only_AA CG4133 chr2L + chr2L_457563_457627 chr2L_457563_457614 chr2L_457400_457562;chr2L_457628_458727 12.66 11.11 11.39 14.13 10.61 13.51 7.07 13.33 8.97 9.46 18.03 9.70 8.00 9.09 11.65 16.67 8.33 18.00 14.52 14.29 11.39 16.20 18.07 13.49 9.41 14.29 13.74 17.05 18.52 7.69 20.61 11.97 18.47 14.14 16.28 6.82 15.09 16.00 16.30 10.13 9.93 12.59 8.06 16.94 10.97 11.76 13.27 12.30 12.66 11.25 12.93 12.87 16.50 10.87 9.18 8.87 12.50 13.20 K intron_retention CG7692 chr3L + chr3L_17349381_17349438 chr3L_17349380_17349381;chr3L_17349438_17349439 chr3L_17348767_17349380;chr3L_17349439_17351141 100.00 NA 100.00 100.00 100.00 90.91 100.00 100.00 93.75 NA NA 93.75 NA NA 100.00 100.00 NA 90.91 90.91 100.00 NA NA 90.91 90.00 NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 88.89 NA NA NA 94.12 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA 92.86 NA 90.91 100.00 K intron_retention noncoding_23420,hep chrX - chrX_12975077_12975545 chrX_12975076_12975077;chrX_12975545_12975546 chrX_12974671_12975076;chrX_12975546_12976097 26.19 27.08 21.11 47.62 19.40 16.67 12.50 37.23 27.03 24.39 23.73 22.98 22.64 26.19 21.35 26.32 34.48 30.51 29.41 21.49 24.56 48.15 27.14 32.05 36.47 40.54 27.78 36.67 23.18 22.82 25.00 20.19 21.47 26.47 30.30 44.44 25.32 30.82 28.63 29.67 35.90 28.35 22.03 28.30 17.46 23.08 23.49 16.25 22.64 27.27 26.11 30.14 19.25 28.45 28.12 23.68 17.58 11.50 N jcn_only_AD CG17760 chr2R + chr2R_8513482_8514257;chr2R_8513731_8514257 chr2R_8513642_8514257 chr2R_8514258_8514421;chr2R_8513465_8513481 100.00 NA NA 80.49 NA NA 70.91 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 77.78 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention CG2046 chr3R - chr3R_1619299_1619362 chr3R_1619298_1619299;chr3R_1619362_1619363 chr3R_1619233_1619298;chr3R_1619363_1619431 0.00 0.00 0.00 0.00 2.56 0.00 2.56 5.41 2.44 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 1.63 0.00 0.00 2.13 0.00 0.00 0.00 3.28 0.00 3.92 0.00 2.22 0.00 1.03 0.00 0.00 3.92 4.62 0.00 1.22 2.74 1.15 2.11 0.00 0.00 1.46 2.48 1.27 1.31 4.48 0.00 0.00 3.70 0.00 0.00 1.96 5.06 1.05 1.00 K alternative_acceptor Sbp2,RI_chr3L_8297501_8297847 chr3L + chr3L_8298069_8298130 chr3L_8298069_8298121 chr3L_8297848_8298068;chr3L_8298131_8298433 100.00 100.00 93.33 95.83 100.00 100.00 95.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 95.83 100.00 100.00 92.86 100.00 100.00 100.00 100.00 96.55 88.89 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 93.75 100.00 95.24 100.00 100.00 K cassette CG42574,RI_chr3R_627714_636393,Hus1-like,RI_chr3R_634997_636393,I_chr3R_636510_637704 chr3R - chr3R_634997_637704 chr3R_634997_636393;chr3R_636510_637704 chr3R_636394_636509 chr3R_634897_634996;chr3R_637705_637730 6.06 NA 4.00 NA NA 5.56 NA NA 6.25 NA 7.14 2.56 4.17 4.35 4.76 6.25 7.14 NA 3.85 14.38 0.00 7.69 5.88 NA NA NA 12.50 8.70 15.38 NA 2.13 NA NA 8.33 6.67 5.56 6.67 NA NA 0.00 NA 9.09 0.00 9.52 0.00 0.00 6.67 6.67 4.44 14.29 11.76 5.26 NA NA 8.33 0.00 NA 0.00 K jcn_only_AD REI_chr3R_10392729_10393060,CG8066,RI_chr3R_10394291_10394385,I_chr3R_10394322_10394381,RI_chr3R_10400799_10401492 chr3R - chr3R_10394322_10394385 chr3R_10394322_10394381 chr3R_10394222_10394321;chr3R_10394386_10394481 0.56 0.39 1.00 0.00 0.00 0.72 0.71 0.28 0.56 0.00 1.16 0.79 0.90 0.00 0.66 0.00 0.00 0.00 0.51 0.41 1.00 0.69 0.24 0.74 0.59 0.81 0.89 0.00 0.48 0.00 1.46 0.33 0.38 0.00 0.00 0.44 0.19 0.46 0.30 0.84 0.63 0.22 1.20 1.10 0.00 0.37 0.66 1.40 0.67 1.06 0.60 0.45 0.98 0.32 0.95 0.93 0.76 0.80 K alternative_donor Sk1 chrX + chrX_11336654_11337599;chrX_11336791_11337599 chrX_11336742_11337599 chrX_11337600_11340043;chrX_11336565_11336653 66.67 NA NA NA NA NA NA NA 37.50 NA NA NA NA NA NA NA NA NA NA 66.67 NA 64.29 NA NA NA NA NA NA NA NA NA NA 50.00 83.33 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA K intron_retention I_chr3L_12522349_12523038,Tsf2,CG4069 chr3L - chr3L_12526579_12526651 chr3L_12526578_12526579;chr3L_12526651_12526652 chr3L_12526151_12526578;chr3L_12526652_12526799 0.00 4.35 NA 0.00 NA 0.00 12.50 0.00 3.23 0.00 NA 0.00 NA NA 5.56 NA NA NA NA 0.00 NA 0.00 1.89 2.04 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 1.96 0.00 3.45 6.25 0.00 0.00 0.00 0.00 0.00 0.00 3.70 1.52 0.00 NA 0.00 NA 0.00 0.00 0.00 K intron_retention CG1640,RI_chrX_13265127_13267895,I_chrX_13265553_13267895,I_chrX_13265618_13267895,RI_chrX_13266680_13267895,RI_chrX_13267529_13267895,I_chrX_13271541_13271890 chrX + chrX_13265295_13267895 chrX_13265294_13265295;chrX_13267895_13267896 chrX_13265281_13265294;chrX_13267896_13267973 11.11 0.00 11.11 19.23 5.26 NA 11.76 20.00 10.81 NA NA 21.74 NA NA 14.29 NA 12.50 NA 0.00 9.09 NA NA 15.00 7.14 NA NA 22.22 NA NA NA 12.50 NA NA 5.56 NA NA 11.11 NA 0.00 15.00 NA 14.29 NA NA NA 0.00 NA NA 9.38 NA 17.65 NA NA NA 0.00 NA NA 7.14 K intron_retention klett chrX - chrX_21500820_21501000 chrX_21500819_21500820;chrX_21501000_21501001 chrX_21500510_21500819;chrX_21501001_21501058 0.00 NA 4.55 15.00 0.00 4.76 0.00 3.64 8.51 NA NA 3.77 4.00 5.13 0.00 15.56 4.35 0.00 5.41 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 7.69 0.00 0.00 NA 0.00 5.45 0.00 0.00 NA NA 0.00 4.26 0.00 4.17 9.09 0.00 NA 0.00 0.00 3.57 8.06 NA 4.00 NA NA NA 0.00 NA NA 0.00 K intron_retention unk,I_chr3R_18980963_18981530 chr3R - chr3R_18980963_18981161 chr3R_18980962_18980963;chr3R_18981161_18981162 chr3R_18980935_18980962;chr3R_18981162_18981185 30.77 NA NA NA NA NA NA 23.53 NA NA NA NA NA NA NA 30.77 NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 38.46 NA NA NA NA NA NA NA NA NA NA NA NA NA 45.45 NA NA NA NA NA NA NA NA NA NA K jcn_only_AD Pegarn chr3L + chr3L_12783483_12784534;chr3L_12783350_12784534 chr3L_12783425_12784534 chr3L_12784535_12784733;chr3L_12783320_12783349 54.76 NA NA NA NA NA NA NA 23.68 NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.91 NA NA NA NA NA 62.96 52.38 NA NA NA NA NA NA NA NA 57.14 N alternative_acceptor Hrb98DE,RI_chr3R_24429041_24431183 chr3R + chr3R_24429421_24429782;chr3R_24429421_24431183 chr3R_24429421_24429573 chr3R_24429330_24429420;chr3R_24431184_24431283 0.43 0.36 0.31 1.21 0.57 0.47 0.70 0.77 0.58 0.85 0.90 0.68 0.80 1.13 0.37 0.61 0.36 0.43 0.59 0.34 2.22 0.29 0.26 0.33 0.55 0.38 0.32 3.56 0.43 0.34 0.32 0.34 0.00 0.55 0.38 0.82 0.43 0.54 0.40 0.21 0.35 0.51 0.75 0.37 0.35 0.45 0.30 0.26 0.69 0.26 0.26 0.47 0.54 0.37 0.29 0.30 0.54 0.45 K intron_retention CG8468 chr2R + chr2R_10107621_10108112 chr2R_10107620_10107621;chr2R_10108112_10108113 chr2R_10107582_10107620;chr2R_10108113_10108270 93.88 88.57 93.18 92.96 96.00 83.33 93.44 90.48 89.77 100.00 98.00 92.86 93.88 95.65 94.44 91.78 94.12 93.18 93.75 94.85 87.18 87.50 87.18 91.67 96.43 91.84 96.67 100.00 95.00 95.83 95.56 94.44 94.87 90.00 97.22 94.59 92.86 85.00 96.15 92.98 90.00 95.89 97.22 89.47 95.65 100.00 85.29 94.34 91.36 80.95 96.55 95.65 100.00 93.33 92.31 95.45 89.47 100.00 K intron_retention fdl,RI_chr2R_8394261_8394315 chr2R - chr2R_8377960_8378027 chr2R_8377959_8377960;chr2R_8378027_8378028 chr2R_8377451_8377959;chr2R_8378028_8378210 0.00 0.00 0.00 3.39 0.00 0.00 0.00 0.69 0.90 0.00 1.23 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.87 0.00 2.13 0.00 0.66 0.00 13.89 0.76 0.00 1.67 0.00 0.00 0.00 0.00 0.70 0.00 2.15 1.01 0.00 1.03 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG12730 chrX + chrX_5411532_5411604 chrX_5411531_5411532;chrX_5411604_5411605 chrX_5411296_5411531;chrX_5411605_5411877 3.03 NA 0.00 3.57 0.00 0.00 0.00 0.00 4.55 0.00 2.56 3.85 0.00 4.00 5.41 0.00 0.00 3.45 10.53 2.44 8.82 3.03 6.35 0.00 6.67 4.55 1.96 7.41 3.23 4.55 0.00 3.57 3.49 2.94 1.72 3.57 1.89 NA 3.66 6.94 3.23 2.90 0.00 4.26 4.76 0.00 2.53 2.02 2.27 0.00 0.00 0.00 3.51 3.57 4.55 9.52 4.55 2.86 K mutually_exclusive HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13165623_13176198,chrX_13176263_13178924 chrX_13165623_13170467,chrX_13170581_13178924 chrX_13176199_13176262 chrX_13170468_13170580 chrX_13165515_13165622;chrX_13178925_13178936 33.33 NA NA 14.29 60.00 NA 20.00 50.00 33.33 NA 0.00 25.00 27.27 57.14 42.86 38.46 37.50 37.50 42.86 25.00 NA 16.67 50.00 33.33 20.00 23.53 20.00 NA 36.36 33.33 33.33 NA 44.44 0.00 NA 17.65 NA 25.00 NA 30.00 33.33 30.00 NA NA 60.00 33.33 NA 30.00 20.00 NA 38.46 NA NA NA 20.00 NA NA NA N jcn_only_AD CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806425_22807254;chr3R_22806725_22807254;chr3R_22806454_22807254 chr3R_22806824_22807254 chr3R_22807255_22807473;chr3R_22806325_22806424 11.40 18.95 11.11 11.34 10.53 7.19 11.85 11.09 12.59 NA 7.92 15.22 11.11 9.71 8.28 12.99 17.83 8.45 13.27 7.01 12.03 16.92 14.41 15.58 10.53 5.23 16.22 NA 16.13 13.89 9.33 3.70 8.96 10.14 10.11 13.16 10.34 11.36 10.81 12.20 4.00 10.29 11.40 17.86 5.13 20.27 18.84 16.05 9.31 19.44 15.45 13.79 14.29 17.65 8.57 12.35 22.37 7.08 K intron_retention Taf12,RI_chr3R_7504595_7505288,I_chr3R_7504949_7505288 chr3R - chr3R_7505121_7505288 chr3R_7505120_7505121;chr3R_7505288_7505289 chr3R_7505076_7505120;chr3R_7505289_7505388 26.32 27.78 26.09 23.64 26.32 23.81 24.49 26.00 29.41 NA 33.33 26.83 23.08 27.27 24.00 22.03 22.73 29.41 27.27 25.00 35.71 9.52 25.00 23.81 31.82 16.67 46.67 50.00 26.32 16.67 22.73 29.03 19.35 23.64 26.32 35.29 26.09 35.29 35.71 35.00 25.93 24.14 20.00 15.79 21.88 20.93 33.33 33.33 31.43 26.47 40.00 19.05 45.45 30.00 30.56 27.27 34.62 27.45 K intron_retention bbc,I_chr2R_9376554_9377246,REI_chr2R_9379401_9381986 chr2R - chr2R_9376554_9377246 chr2R_9376553_9376554;chr2R_9377246_9377247 chr2R_9376527_9376553;chr2R_9377247_9377346 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG13295,I_chr3L_6067590_6067643 chr3L - chr3L_6067590_6067647 chr3L_6067590_6067643 chr3L_6067490_6067589;chr3L_6067648_6067743 0.00 NA NA 0.00 NA 0.00 0.00 0.00 9.38 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA 0.00 4.76 NA NA 6.52 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 3.92 NA 0.00 NA 3.33 0.00 NA 0.00 NA 0.00 NA NA 4.76 NA NA NA NA K alternative_donor rut,I_chrX_14718760_14718821 chrX - chrX_14686462_14687506 chrX_14686462_14687158 chrX_14685281_14686461;chrX_14687507_14688185 93.33 86.36 92.86 70.00 92.86 81.25 100.00 80.95 100.00 100.00 90.91 92.00 100.00 92.86 94.74 100.00 92.31 78.95 83.33 89.74 84.62 70.73 88.57 96.67 93.33 84.62 94.12 100.00 79.17 96.77 93.33 94.12 92.86 95.45 100.00 94.44 100.00 86.36 97.06 100.00 91.67 93.55 90.91 96.88 97.22 100.00 93.75 91.84 96.15 93.33 95.24 90.91 92.86 94.12 88.24 93.33 100.00 100.00 K intron_retention l(2)k01209,I_chr2R_13308079_13310771,I_chr2R_13309452_13310771,RI_chr2R_13310877_13311160 chr2R + chr2R_13309417_13311160 chr2R_13309416_13309417;chr2R_13311160_13311161 chr2R_13309352_13309416;chr2R_13311161_13311260 81.82 92.86 91.67 NA NA NA 93.75 100.00 87.50 70.00 NA 80.00 NA NA 88.89 82.35 NA NA 77.78 86.21 88.89 76.47 86.96 75.00 76.92 NA 83.33 66.67 92.31 81.82 46.67 80.00 71.43 93.33 100.00 80.00 85.71 71.43 66.67 65.71 NA 70.59 NA 80.00 81.82 92.86 90.91 NA 94.44 76.92 85.71 77.78 90.00 86.67 NA 80.00 81.82 81.82 K intron_retention CaMKI,I_chr4_467862_471815,I_chr4_470923_470996,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_470943_470996 chr4_470942_470943;chr4_470996_470997 chr4_470868_470942;chr4_470997_471096 0.00 0.00 0.00 6.82 NA NA 0.00 0.00 0.00 NA NA 7.14 0.00 0.00 5.56 0.00 0.00 4.35 0.00 0.00 NA NA 0.00 NA NA NA NA 14.29 NA NA 0.00 NA NA 4.17 0.00 17.65 NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 3.77 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K intron_retention spn-E,I_chr3R_11663703_11663759 chr3R + chr3R_11667128_11667178 chr3R_11667127_11667128;chr3R_11667178_11667179 chr3R_11666994_11667127;chr3R_11667179_11667768 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 8.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 4.35 0.00 NA 5.56 NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K alternative_donor ena chr2R + chr2R_15029352_15029711;chr2R_15029330_15029711 chr2R_15029276_15029711 chr2R_15029712_15029859;chr2R_15029150_15029275 50.00 44.44 40.00 37.29 52.78 37.50 41.79 21.31 47.78 70.00 52.17 32.97 45.95 47.83 34.15 61.97 46.34 36.00 28.57 44.87 43.33 60.00 53.66 62.50 38.89 30.00 66.67 75.00 30.00 72.41 51.06 50.00 66.67 39.19 62.50 56.76 51.85 55.56 45.45 55.00 38.46 36.76 37.21 51.61 50.00 57.14 66.67 50.00 50.55 50.00 63.83 58.62 68.42 61.54 35.85 47.83 70.00 70.59 K alternative_donor CG6359,I_chr3R_8454231_8454610 chr3R + chr3R_8454231_8454610 chr3R_8454243_8454610 chr3R_8454611_8454706;chr3R_8454210_8454230 100.00 100.00 100.00 100.00 98.85 99.12 100.00 100.00 100.00 100.00 98.72 100.00 100.00 100.00 99.20 98.94 100.00 100.00 100.00 100.00 98.92 99.35 99.48 100.00 100.00 100.00 99.38 98.88 100.00 100.00 100.00 100.00 99.28 99.27 100.00 100.00 100.00 100.00 100.00 100.00 99.05 100.00 98.78 100.00 99.24 100.00 100.00 98.68 100.00 99.42 99.30 100.00 99.30 99.30 99.22 100.00 99.56 100.00 K alternative_acceptor cib,I_chrX_4000307_4003527 chrX + chrX_4004044_4004195 chrX_4004044_4004184 chrX_4003930_4004043;chrX_4004196_4004670 100.00 100.00 100.00 99.10 98.18 100.00 100.00 99.18 100.00 100.00 100.00 99.06 100.00 100.00 100.00 98.96 100.00 100.00 100.00 99.33 100.00 100.00 100.00 100.00 98.36 100.00 98.63 100.00 100.00 100.00 100.00 98.44 100.00 98.97 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.75 100.00 99.20 100.00 100.00 99.21 100.00 98.86 100.00 100.00 100.00 100.00 100.00 98.90 100.00 K jcn_only_AD CG8839,I_chr2R_8229288_8229488,I_chr2R_8229288_8231538 chr2R - chr2R_8229288_8231968;chr2R_8229288_8231964;chr2R_8229288_8231966 chr2R_8229288_8232025 chr2R_8229188_8229287;chr2R_8232026_8232112 66.67 67.33 65.58 70.30 69.53 69.54 63.27 75.44 67.04 53.93 74.03 75.07 60.94 68.51 69.32 66.20 65.50 66.36 75.38 65.29 67.26 72.79 65.09 72.03 63.64 72.95 65.85 61.90 62.60 66.67 76.17 68.91 62.50 68.79 54.90 67.50 53.08 67.09 66.20 74.90 55.86 70.56 64.32 51.28 64.67 70.00 60.23 57.28 68.75 74.63 58.72 63.64 66.67 70.37 76.19 70.65 64.66 53.51 K intron_retention RI_chr3L_707623_707678,CkIIalpha-i3,CG13896,RI_chr3L_711692_711744 chr3L - chr3L_709614_709737 chr3L_709613_709614;chr3L_709737_709738 chr3L_709557_709613;chr3L_709738_710247 16.28 23.53 NA 17.07 NA 0.00 15.91 12.50 23.53 NA NA 22.22 23.68 19.05 16.67 20.83 21.43 29.41 28.57 16.67 NA 17.86 4.00 22.22 14.29 5.56 36.36 NA NA NA 9.09 NA 11.11 25.93 NA 10.53 NA NA 6.67 10.53 0.00 16.28 15.00 18.18 NA 11.76 0.00 NA 24.32 NA 10.53 20.00 9.52 NA 15.00 6.25 30.43 0.00 K cassette CG6729,I_chr2L_10742536_10742692,I_chr2L_10743767_10743821,E_chr2L_10745700_10745781,I_chr2L_10753685_10755903 chr2L - chr2L_10742536_10742692 chr2L_10742536_10742587;chr2L_10742635_10742692 chr2L_10742588_10742634 chr2L_10742436_10742535;chr2L_10742693_10742792 100.00 100.00 88.89 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 92.31 100.00 NA 90.91 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA 87.50 NA NA 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K intron_retention ire-1,FI_chr3R_15689914_15690042 chr3R - chr3R_15682905_15682962 chr3R_15682904_15682905;chr3R_15682962_15682963 chr3R_15682682_15682904;chr3R_15682963_15683406 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 6.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341522_20342041 chr3L_20341521_20341522;chr3L_20342041_20342042 chr3L_20341515_20341521;chr3L_20342042_20342306 11.76 25.00 9.09 14.29 0.00 15.38 13.64 18.18 10.34 NA 7.14 22.58 20.00 23.08 13.04 13.16 4.76 11.76 5.88 14.00 9.09 NA 28.57 21.05 NA 11.11 NA NA NA NA 0.00 NA NA 9.76 NA NA 10.53 7.14 NA 10.77 NA 15.69 8.33 11.76 NA NA NA 20.00 16.00 11.76 NA 30.77 NA NA 11.76 NA 0.00 15.00 N cassette CG16971,CG33229,I_chr3L_225856_225909,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_224184_225725 chr3L_224184_224972;chr3L_225141_225725 chr3L_224973_225140 chr3L_224174_224183;chr3L_225726_225849 100.00 100.00 100.00 100.00 100.00 100.00 98.59 100.00 98.77 100.00 100.00 98.69 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CtBP chr3R + chr3R_8847030_8847141 chr3R_8847029_8847030;chr3R_8847141_8847142 chr3R_8846898_8847029;chr3R_8847142_8847364 8.67 4.35 9.46 9.68 8.62 6.10 9.86 9.09 8.94 5.26 6.10 8.67 8.86 17.33 6.90 14.29 5.00 8.86 11.11 8.96 7.69 6.85 10.61 6.94 4.84 9.30 10.77 10.53 5.00 6.76 8.94 7.55 5.45 9.52 10.94 7.14 6.98 6.90 6.59 9.93 9.09 8.63 4.62 3.28 10.26 7.14 8.70 6.48 8.50 12.20 9.84 9.62 5.77 6.78 11.34 8.20 9.52 10.81 K alternative_acceptor CG14803,CG14805 chrX + chrX_1763276_1763334 chrX_1763276_1763330 chrX_1762927_1763275;chrX_1763335_1763911 100.00 NA 90.91 100.00 90.91 100.00 80.00 100.00 94.74 NA NA 100.00 NA NA 100.00 100.00 NA NA NA 100.00 NA 100.00 90.00 100.00 87.50 100.00 100.00 NA NA 100.00 88.89 NA 95.00 93.33 NA 88.89 100.00 NA 92.31 100.00 87.50 100.00 NA 88.89 90.91 83.33 NA 95.24 100.00 NA NA 90.00 NA NA 100.00 NA 100.00 100.00 K cassette Atpalpha,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16783890_16789446;chr3R_16785103_16789446 chr3R_16783890_16786447,chr3R_16785103_16786447;chr3R_16786548_16789446 chr3R_16786448_16786547 chr3R_16783790_16783889;chr3R_16789447_16789578 5.56 3.12 3.23 2.46 2.74 5.49 1.95 4.64 3.21 8.00 31.96 12.00 4.00 5.00 1.52 3.45 2.88 5.36 3.66 7.25 12.99 6.85 5.26 6.98 5.00 3.45 5.26 6.25 34.78 7.32 6.56 5.88 10.42 3.03 6.15 5.13 7.32 8.57 2.63 6.85 10.34 3.05 4.76 4.29 17.65 11.63 7.69 16.67 3.80 3.92 6.49 7.69 11.54 5.56 3.37 5.56 21.88 21.74 K jcn_only_AD CG4159 chr3R - chr3R_16418216_16418282 chr3R_16418216_16418278 chr3R_16417730_16418215;chr3R_16418283_16418358 45.00 37.93 47.62 46.43 NA NA 41.46 53.33 54.10 NA NA 58.82 NA 39.13 NA 44.90 NA NA NA 46.88 NA 45.00 42.42 40.62 NA NA 43.33 NA NA NA 30.77 NA NA 44.44 47.62 NA 50.00 57.69 43.48 NA NA 39.39 NA NA NA 52.17 56.76 NA 30.56 29.27 61.76 40.00 51.61 80.00 NA 40.00 45.10 NA K intron_retention CG32230,RI_chr3L_23332465_23332529,RI_chr3L_23332577_23334556,RI_chr3L_23332781_23338942 chr3L + chr3L_23332470_23332529 chr3L_23332469_23332470;chr3L_23332529_23332530 chr3L_23332386_23332469;chr3L_23332530_23332576 61.64 66.67 19.35 61.64 50.00 39.29 64.71 50.60 67.11 69.23 41.38 47.92 25.93 64.10 37.78 70.69 63.83 48.28 43.10 42.11 34.38 NA NA 82.61 76.47 72.00 91.67 NA NA NA 37.04 60.00 NA 47.06 NA NA 82.35 NA NA 64.71 88.89 50.63 52.63 69.23 36.36 72.73 81.25 NA 47.14 85.19 NA 86.36 NA NA 46.67 64.29 87.23 50.00 K intron_retention Spn,I_chr3L_2511764_2512148 chr3L - chr3L_2508866_2509363 chr3L_2508865_2508866;chr3L_2509363_2509364 chr3L_2508639_2508865;chr3L_2509364_2509500 13.95 6.25 10.00 22.22 NA 11.76 28.57 9.09 10.00 11.11 NA 8.33 14.29 10.53 22.22 NA NA NA NA 12.20 NA 39.13 11.90 8.33 0.00 NA 29.17 46.15 21.43 12.50 14.29 15.38 21.05 12.50 19.05 18.52 12.77 0.00 13.95 21.13 16.67 14.81 20.00 21.88 17.86 17.65 13.64 22.22 16.22 11.76 12.90 10.53 12.90 11.54 21.05 10.71 15.38 9.43 K intron_retention CG32982,RI_chr2L_9125941_9126760,I_chr2L_9125941_9126769,I_chr2L_9127467_9148754,F_chr2L_9149162_9154658 chr2L + chr2L_9125941_9126880 chr2L_9125940_9125941;chr2L_9126880_9126881 chr2L_9125841_9125940;chr2L_9126881_9127466 67.09 61.11 69.57 61.11 86.67 72.00 77.14 60.00 75.44 NA NA 61.11 78.95 79.17 66.67 80.77 75.00 81.25 61.29 79.49 75.00 72.00 83.33 50.00 46.15 84.62 57.14 NA NA 73.33 75.00 NA 44.83 67.50 70.00 45.45 66.67 45.45 NA 48.39 46.15 65.45 67.74 63.64 41.67 50.00 60.00 50.00 77.27 29.17 58.82 69.23 NA NA 75.86 NA NA NA K intron_retention kraken chr2L + chr2L_853006_853191 chr2L_853005_853006;chr2L_853191_853192 chr2L_852716_853005;chr2L_853192_853278 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 1.30 7.24 0.00 0.00 0.81 0.00 0.00 2.82 2.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 1.64 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CycH,CG7407 chr3L + chr3L_21815986_21816040 chr3L_21815985_21815986;chr3L_21816040_21816041 chr3L_21815757_21815985;chr3L_21816041_21816152 0.00 0.00 0.00 2.33 0.00 0.00 7.32 0.00 1.43 0.00 0.00 2.00 0.00 0.00 10.53 0.00 0.00 0.00 0.00 0.00 8.33 4.35 5.17 0.00 12.12 12.00 5.26 9.68 10.34 4.00 0.00 4.35 0.00 0.00 7.14 19.05 0.00 0.00 4.44 4.88 10.00 0.00 0.00 0.00 0.00 7.41 2.17 NA 10.00 3.03 11.11 0.00 0.00 5.88 0.00 0.00 1.67 0.00 K intron_retention Hrb98DE,I_chr3R_24425722_24428493,I_chr3R_24426291_24426781,RI_chr3R_24429041_24431183 chr3R + chr3R_24426291_24426427 chr3R_24426290_24426291;chr3R_24426427_24426428 chr3R_24426191_24426290;chr3R_24426428_24426917 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.98 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_716153_716322;chr4_715043_716322;chr4_715964_716322 chr4_716066_716322 chr4_716323_716675 23.81 NA NA 31.25 NA NA 16.00 17.39 21.82 NA NA 25.00 NA 30.43 NA 17.07 28.57 NA NA 17.14 NA NA NA NA NA NA NA NA NA NA 23.81 NA NA 10.42 NA NA NA NA NA NA NA 26.92 NA NA NA NA NA NA 36.67 NA NA NA NA NA NA NA NA NA K intron_retention l(2)37Ce,RI_chr2L_19132432_19132483,I_chr2L_19134277_19143634,RI_chr2L_19145845_19146761 chr2L + chr2L_19132417_19132483 chr2L_19132416_19132417;chr2L_19132483_19132484 chr2L_19132357_19132416;chr2L_19132484_19132583 0.56 0.00 3.17 6.02 0.00 0.00 1.80 1.12 1.88 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 1.96 0.00 8.33 6.82 3.45 4.88 2.00 13.89 25.00 3.23 0.00 6.90 0.00 0.00 0.00 0.00 6.67 1.33 0.00 3.70 5.13 NA 1.71 0.00 0.00 0.00 3.85 2.86 0.00 0.00 0.00 4.76 0.00 0.00 11.11 3.92 3.57 3.75 0.00 K intron_retention alpha-Cat,I_chr3L_23319861_23321813,I_chr3L_23327841_23328002 chr3L - chr3L_23322024_23322078 chr3L_23322023_23322024;chr3L_23322078_23322079 chr3L_23321814_23322023;chr3L_23322079_23322498 100.00 96.92 100.00 99.41 100.00 100.00 98.66 99.45 100.00 100.00 98.25 99.39 100.00 100.00 100.00 100.00 98.97 98.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.72 100.00 97.30 100.00 100.00 99.11 98.46 100.00 100.00 100.00 100.00 97.67 100.00 98.31 99.20 98.46 100.00 99.06 98.97 98.08 98.88 98.36 100.00 100.00 98.51 98.72 98.11 96.97 97.22 100.00 100.00 100.00 100.00 K intron_retention lolal,I_chr2R_14043671_14043736,I_chr2R_14043671_14043740,I_chr2R_14043671_14043901,RI_chr2R_14043671_14044082,I_chr2R_14043671_14044191,I_chr2R_14043671_14044461,I_chr2R_14043671_14045289,I_chr2R_14043671_14045344 chr2R - chr2R_14043671_14043901 chr2R_14043670_14043671;chr2R_14043901_14043902 chr2R_14043571_14043670;chr2R_14043902_14043954 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 88.89 100.00 100.00 NA 100.00 87.50 84.62 NA NA NA NA 88.89 100.00 100.00 NA NA 100.00 NA 100.00 88.89 NA 88.89 100.00 NA 100.00 NA NA NA NA 100.00 NA 100.00 88.89 100.00 NA 88.89 NA 100.00 NA 100.00 NA K intron_retention CG1161,I_chr3R_1182079_1182146 chr3R + chr3R_1181851_1182146 chr3R_1181850_1181851;chr3R_1182146_1182147 chr3R_1181725_1181850;chr3R_1182147_1182246 7.97 5.42 8.42 10.43 6.57 9.13 10.92 12.12 7.98 5.43 6.34 9.78 13.27 10.31 8.65 16.41 7.01 14.23 13.74 11.92 7.63 7.46 7.04 6.21 6.79 24.39 7.24 5.12 6.30 7.20 14.17 6.83 9.20 10.51 9.88 8.95 3.49 3.32 5.57 9.70 7.84 7.97 13.02 4.80 4.24 8.44 6.42 8.33 10.09 6.21 8.55 7.02 4.04 10.59 11.88 6.94 5.65 5.97 K jcn_only_AD eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341925_20342041;chr3L_20341509_20342041;chr3L_20341865_20342041;chr3L_20341486_20342041;chr3L_20341522_20342041;chr3L_20341751_20342041;chr3L_20341530_20342041;chr3L_20341629_20342041;chr3L_20341598_20342041;chr3L_20341759_20342041 chr3L_20341636_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 N intron_retention CG17255,I_chrX_10366177_10366615,RI_chrX_10366177_10367270 chrX - chrX_10366177_10368085 chrX_10366176_10366177;chrX_10368085_10368086 chrX_10366077_10366176;chrX_10368086_10368118 0.00 0.00 3.03 1.12 2.38 0.00 0.00 0.00 0.00 0.00 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.93 0.00 2.74 2.70 0.00 3.23 2.04 2.20 1.43 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.85 3.92 0.00 0.00 0.00 0.00 0.00 0.94 0.00 1.52 0.00 0.00 0.00 1.15 0.00 0.00 0.00 K alternative_acceptor cryptocephal,noncoding_4181,I_chr2L_21311307_21311752,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21311033_21311913 chr2L_21311033_21311752 chr2L_21310948_21311032;chr2L_21311914_21312043 99.92 99.80 99.83 100.00 100.00 100.00 99.86 100.00 100.00 100.00 100.00 99.92 100.00 100.00 99.85 99.86 99.83 99.80 99.88 99.64 100.00 99.72 99.87 100.00 100.00 100.00 99.86 99.76 99.71 99.78 99.89 100.00 100.00 99.92 99.74 100.00 100.00 99.77 99.78 100.00 100.00 99.92 99.82 100.00 99.64 100.00 99.42 99.80 99.84 99.79 100.00 100.00 100.00 99.67 99.88 99.74 100.00 100.00 N alternative_donor CG30492,C_chr2R_3522706_3523025,CG30494,RI_chr2R_3536203_3536977,I_chr2R_3543397_3543455 chr2R + chr2R_3528123_3535801 chr2R_3533932_3535801 chr2R_3535802_3535913;chr2R_3527622_3528122 21.74 23.53 18.92 11.76 14.63 21.88 48.39 22.73 26.09 22.22 59.38 27.54 39.47 31.03 30.30 19.57 21.43 17.02 23.26 37.04 33.33 20.00 21.05 20.00 21.05 9.52 18.92 50.00 28.57 26.92 21.21 26.32 37.50 30.77 26.09 40.91 14.00 16.67 17.65 26.19 13.04 24.64 18.18 26.83 11.54 13.89 11.76 34.78 28.12 13.33 21.74 31.58 13.79 11.11 19.64 11.43 16.13 20.00 K alternative_last_exon eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20344831_20346544,chr3L_20344831_20345906 chr3L_20344831_20344998 chr3L_20346545_20347505 chr3L_20344999_20345571 chr3L_20344683_20344830 11.11 7.69 8.33 51.11 8.33 15.38 28.00 15.15 11.43 8.33 27.27 15.15 18.18 16.67 6.67 4.76 10.00 21.43 11.11 11.11 10.00 14.29 15.79 11.11 21.43 12.50 11.76 30.77 13.64 13.33 11.11 9.09 7.69 11.11 16.67 43.48 7.69 0.00 10.00 9.68 18.42 7.89 9.09 11.11 10.00 5.88 8.70 8.57 9.30 12.50 14.29 16.67 5.26 0.00 10.53 9.09 8.00 3.17 K intron_retention Ide,I_chr3L_20366301_20366354,I_chr3L_20368443_20368519 chr3L - chr3L_20367944_20367998 chr3L_20367943_20367944;chr3L_20367998_20367999 chr3L_20367715_20367943;chr3L_20367999_20368269 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 1.64 0.00 0.00 0.00 3.08 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention cenG1A,RI_chr2L_13836433_13850514,CG7916,CG7953,CG7968 chr2L + chr2L_13836433_13891299 chr2L_13836432_13836433;chr2L_13891299_13891300 chr2L_13836333_13836432;chr2L_13891300_13891532 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.90 7.32 0.00 0.00 5.26 NA 0.00 9.09 13.64 0.00 6.67 0.00 4.65 0.00 0.00 0.00 NA NA 5.56 0.00 NA NA 0.00 5.26 NA NA 7.41 NA NA 5.41 0.00 0.00 0.00 NA 2.33 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 NA NA NA 0.00 NA NA NA K cassette cno,I_chr3R_999718_999986,I_chr3R_999737_999777,I_chr3R_1003608_1005580 chr3R - chr3R_1003233_1006778 chr3R_1003233_1003358;chr3R_1003608_1006778 chr3R_1003359_1003607 chr3R_1003016_1003232;chr3R_1006779_1006837 100.00 100.00 100.00 100.00 98.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.32 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.29 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette cora,I_chr2R_15125277_15130573,I_chr2R_15125940_15130208,I_chr2R_15129291_15129988 chr2R + chr2R_15129901_15130208 chr2R_15129901_15129988;chr2R_15130091_15130208 chr2R_15129989_15130090 chr2R_15129679_15129900;chr2R_15130209_15130308 99.44 99.31 98.81 99.16 98.98 99.33 92.45 100.00 99.00 99.55 99.14 98.37 96.43 99.62 99.73 99.63 99.65 99.74 99.65 99.55 99.40 99.87 99.43 99.80 99.68 96.21 99.74 98.32 98.53 99.25 99.69 99.19 99.24 99.36 99.45 97.94 99.34 99.47 99.68 99.13 98.83 99.44 99.61 99.77 98.77 99.82 100.00 99.45 99.30 98.91 99.23 99.56 99.73 99.77 99.63 99.79 99.52 99.20 K intron_retention CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4990840_4990907 chr2L_4990839_4990840;chr2L_4990907_4990908 chr2L_4990692_4990839;chr2L_4990908_4991082 1.07 0.00 1.28 0.75 2.05 0.00 1.61 1.23 1.26 2.00 1.56 1.03 1.05 0.60 1.42 0.54 0.00 0.00 0.52 1.80 0.62 1.35 1.22 1.69 0.85 2.95 5.01 7.14 7.47 0.72 1.87 0.00 1.05 0.96 1.08 5.56 0.55 0.97 1.50 1.07 3.02 1.43 1.40 1.15 0.90 0.79 0.00 1.33 0.00 2.16 1.27 0.00 0.00 0.00 0.45 0.00 0.91 2.53 K intron_retention Utx chr2L - chr2L_10273407_10273462 chr2L_10273406_10273407;chr2L_10273462_10273463 chr2L_10273197_10273406;chr2L_10273463_10273882 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.98 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 12.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 4.17 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2816013;chr2R_2816342_2816577;chr2R_2816779_2817354;chr2R_2817604_2817753 chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817355_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 50.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Aats-cys chr2R + chr2R_12032423_12032484 chr2R_12032422_12032423;chr2R_12032484_12032485 chr2R_12032278_12032422;chr2R_12032485_12033083 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32758 chrX - chrX_5615236_5615294 chrX_5615235_5615236;chrX_5615294_5615295 chrX_5613769_5615235;chrX_5615295_5615729 86.21 94.74 87.50 95.24 91.67 91.67 64.71 94.44 89.36 81.25 94.44 82.14 85.71 92.31 100.00 100.00 93.75 36.84 89.47 82.35 88.24 60.87 86.36 94.44 76.47 78.57 71.43 77.78 70.59 82.35 80.00 93.75 89.09 86.21 78.95 85.71 88.24 50.00 81.82 84.62 89.47 87.50 100.00 76.47 84.00 81.25 83.33 94.12 81.82 88.24 85.19 85.71 91.67 86.67 93.75 78.95 78.26 91.30 K intron_retention CkIIbeta,I_chrX_11689220_11690898 chrX + chrX_11689042_11689137 chrX_11689041_11689042;chrX_11689137_11689138 chrX_11688852_11689041;chrX_11689138_11689219 0.00 0.00 0.00 0.66 0.00 0.00 0.83 0.60 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG17698 chr3L + chr3L_23741474_23741523;chr3L_23739645_23741523 chr3L_23741393_23741523 chr3L_23741524_23741816 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 2.35 NA NA NA NA NA 9.52 NA NA NA NA 1.54 0.00 NA 0.00 0.00 NA NA NA NA 0.00 NA 1.75 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 K intron_retention sec24,I_chr2R_5768722_5769689 chr2R - chr2R_5766390_5766448 chr2R_5766389_5766390;chr2R_5766448_5766449 chr2R_5766164_5766389;chr2R_5766449_5766948 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.61 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG8680 chr2L - chr2L_5099674_5099736 chr2L_5099674_5099731 chr2L_5099500_5099673;chr2L_5099737_5099913 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.85 0.67 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.68 0.00 0.88 1.22 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG34430 chr2R + chr2R_3831403_3831581 chr2R_3831402_3831403;chr2R_3831581_3831582 chr2R_3831169_3831402;chr2R_3831582_3831980 40.00 NA NA 71.43 NA NA 42.11 40.00 51.85 NA 50.00 52.17 NA 50.00 41.67 68.18 NA NA 40.00 33.33 40.00 28.00 41.18 NA 60.00 NA 40.00 53.85 13.33 54.55 15.79 NA NA 47.06 NA NA 35.71 NA NA 17.86 23.08 50.00 NA NA NA 28.57 41.67 14.29 55.00 28.00 26.67 NA NA NA NA 25.00 30.77 NA K intron_retention CG32364 chr3L - chr3L_8203336_8203412 chr3L_8203335_8203336;chr3L_8203412_8203413 chr3L_8203272_8203335;chr3L_8203413_8203481 56.25 63.64 50.00 75.00 75.00 58.33 47.37 58.82 51.16 60.00 NA 66.67 60.00 75.00 40.00 66.67 54.55 40.00 54.55 24.32 63.64 38.89 41.67 52.00 64.71 50.00 63.16 56.25 45.45 NA NA 36.36 47.83 57.89 76.47 41.67 42.86 68.75 60.00 44.44 62.50 57.69 41.67 52.63 25.00 44.44 95.00 18.18 50.00 62.86 84.21 47.83 62.50 64.00 56.25 60.87 72.00 26.92 N jcn_only_AA Doa,I_chr3R_24715823_24718923,I_chr3R_24747391_24747896 chr3R + chr3R_24747272_24747896 chr3R_24747272_24747336 chr3R_24747081_24747271;chr3R_24747897_24747996 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Mitf,I_chr4_1225890_1225947 chr4 + chr4_1226276_1226372 chr4_1226275_1226276;chr4_1226372_1226373 chr4_1225948_1226275;chr4_1226373_1226697 96.67 100.00 96.08 98.61 100.00 97.14 94.25 95.12 96.70 100.00 96.88 87.34 96.67 97.56 94.23 95.70 97.14 94.44 98.39 96.30 96.77 90.48 97.73 96.67 100.00 97.67 95.12 100.00 86.36 91.67 95.77 96.15 100.00 95.29 96.30 100.00 100.00 96.30 96.77 98.00 90.00 97.67 91.67 96.88 88.46 94.87 89.74 97.06 95.74 96.67 100.00 96.55 96.30 95.45 96.83 97.30 88.89 97.73 K jcn_only_AA par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350437_15351846 chr2R_15350437_15351814 chr2R_15350337_15350436;chr2R_15351847_15351914 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA K alternative_last_exon CG14394,I_chr3R_8522392_8522445 chr3R + chr3R_8522022_8522445;chr3R_8522022_8522175 chr3R_8522022_8522786 chr3R_8522446_8522755;chr3R_8522176_8522382 chr3R_8522787_8523265 chr3R_8521845_8522021 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12922514_12922850 chr2R_12922513_12922514;chr2R_12922850_12922851 chr2R_12922340_12922513;chr2R_12922851_12923912 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 NA 0.00 4.17 0.00 0.00 0.00 6.45 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 10.53 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.59 0.00 0.00 0.00 6.25 0.00 NA 0.00 NA 0.00 0.00 K intron_retention CG7358,I_chrX_18784661_18784773 chrX - chrX_18784515_18784578 chrX_18784514_18784515;chrX_18784578_18784579 chrX_18784488_18784514;chrX_18784579_18784646 7.69 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA 5.56 NA 21.43 NA NA NA NA NA NA NA NA 3.85 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA K intron_retention CG15618,RI_chrX_19759043_19759112 chrX - chrX_19759043_19759117 chrX_19759042_19759043;chrX_19759117_19759118 chrX_19758943_19759042;chrX_19759118_19759212 13.79 16.00 13.64 29.41 NA 4.55 17.65 13.79 11.63 17.65 NA 13.89 12.50 14.29 10.00 0.00 6.67 0.00 9.09 22.86 16.67 70.00 24.24 6.67 41.67 23.53 34.78 0.00 50.00 34.78 25.81 0.00 11.11 12.50 19.05 36.36 11.63 16.67 21.05 25.00 41.67 9.09 NA 20.00 5.56 13.04 11.11 13.51 15.79 13.33 8.33 NA 10.00 NA 14.29 NA 0.00 9.38 K intron_retention RhoGAP19D,EI_chrX_20347839_20348139,DMG4-MB6.chrX.37.001,RI_chrX_20380495_20381649 chrX - chrX_20345036_20345248 chrX_20345035_20345036;chrX_20345248_20345249 chrX_20344594_20345035;chrX_20345249_20345509 5.48 4.17 7.14 2.94 NA 0.00 21.88 5.56 10.42 0.00 NA 10.34 4.76 0.00 0.00 0.00 0.00 4.00 0.00 8.93 0.00 28.12 3.12 6.25 0.00 9.52 0.00 23.08 15.38 0.00 5.00 NA 22.22 7.14 13.04 8.00 8.89 5.41 7.14 9.09 NA 4.44 12.50 26.32 NA 7.69 0.00 13.04 4.55 0.00 0.00 5.56 NA NA 3.85 NA NA 6.67 K alternative_donor Ptp10D,CEF_chrX_11516219_11517862,I_chrX_11516225_11516345 chrX + chrX_11516219_11516345 chrX_11516225_11516345 chrX_11516346_11516390;chrX_11516125_11516218 88.89 NA NA NA NA NA NA 100.00 NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 63.64 NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG2519 chr3R - chr3R_1372457_1373328 chr3R_1372457_1373058 chr3R_1372178_1372456;chr3R_1373329_1373473 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 0.00 5.00 NA 4.55 0.00 NA NA 4.35 0.00 NA 2.63 4.44 NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 3.57 0.00 NA NA NA 3.03 NA 2.56 NA NA NA NA NA 10.00 4.35 NA 0.00 NA NA NA 0.00 NA NA NA N jcn_only_AA CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789733_9789790;chr2L_9789740_9789790;chr2L_9789718_9789790;chr2L_9789751_9789790;chr2L_9789598_9789790 chr2L_9789694_9789790 chr2L_9789791_9789832;chr2L_9789594_9789597 6.87 8.18 6.79 5.28 3.85 6.96 4.22 3.99 4.47 3.45 6.41 5.65 2.65 7.43 8.00 5.76 6.78 5.22 5.71 5.98 5.19 3.39 10.00 11.76 10.00 6.67 14.56 16.67 10.10 9.90 2.70 5.06 7.48 7.87 9.09 41.67 8.33 12.12 8.33 6.99 5.31 4.47 8.47 7.46 12.05 5.30 10.45 6.44 6.87 11.29 10.91 2.22 13.46 22.22 4.21 4.55 14.04 1.55 K jcn_only_AA CG1815,I_chr3R_27501104_27501167,I_chr3R_27501104_27501176 chr3R + chr3R_27501104_27501176;chr3R_27501104_27501167 chr3R_27501104_27501179 chr3R_27501004_27501103;chr3R_27501180_27501267 43.75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 54.17 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA K intron_retention UbcD2,CG6724 chr2L - chr2L_10766131_10766190 chr2L_10766130_10766131;chr2L_10766190_10766191 chr2L_10765551_10766130;chr2L_10766191_10766275 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 3.64 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31522,I_chr3R_270285_272146,I_chr3R_270285_272461,I_chr3R_271138_271887,I_chr3R_272255_272359,RI_chr3R_273677_279264 chr3R - chr3R_270150_270227 chr3R_270149_270150;chr3R_270227_270228 chr3R_270044_270149;chr3R_270228_270284 0.00 0.00 1.96 0.00 0.00 0.00 0.00 2.90 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 2.33 6.25 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 2.86 1.92 6.90 0.00 0.00 3.28 0.00 0.00 0.00 K jcn_only_AD Pi3K21B,I_chr2L_301774_302025,I_chr2L_301945_302025 chr2L + chr2L_301945_302025;chr2L_299919_302025 chr2L_301774_302025 chr2L_302026_302125;chr2L_299033_299918 0.60 0.00 2.90 0.97 0.00 0.00 0.00 1.89 0.60 0.00 1.85 1.56 1.25 0.00 0.00 0.83 2.27 1.41 1.85 0.00 2.50 2.33 0.00 0.00 1.79 1.64 2.35 3.53 0.00 1.85 0.00 0.00 0.00 0.94 0.00 2.04 2.00 2.82 0.00 0.79 0.00 0.00 0.00 2.41 NA 2.63 0.00 0.00 0.00 0.00 2.70 0.00 4.35 0.00 0.00 0.00 NA 4.17 K jcn_only_AD Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2362869;chr2L_2361586_2362590 chr2L_2361586_2362674 chr2L_2361486_2361585;chr2L_2362870_2362919 86.36 NA NA 78.26 NA NA NA 75.00 76.92 NA NA 89.29 NA NA NA 83.33 NA NA NA 90.91 NA NA 92.00 86.36 NA NA NA NA NA NA 85.00 NA NA 95.65 NA NA NA NA NA NA NA 93.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette cora,I_chr2R_15129291_15129988 chr2R + chr2R_15124569_15125656 chr2R_15124569_15124832;chr2R_15124947_15125656 chr2R_15124833_15124946 chr2R_15124447_15124568;chr2R_15125657_15125819 0.71 0.67 0.78 0.00 0.00 0.00 0.56 0.78 0.78 0.00 1.18 1.95 0.00 0.66 1.35 1.05 0.87 0.57 0.00 0.77 0.73 1.02 1.42 0.40 2.72 0.67 0.82 0.67 1.66 0.67 0.60 1.00 1.53 1.00 0.61 0.68 0.66 0.58 0.82 0.25 0.95 0.30 0.85 1.62 1.03 0.00 1.60 1.00 0.67 0.43 0.39 0.64 0.90 0.90 0.82 0.71 0.00 0.00 K intron_retention Spc105R chr3L + chr3L_20793606_20793666 chr3L_20793605_20793606;chr3L_20793666_20793667 chr3L_20793565_20793605;chr3L_20793667_20793770 0.00 NA 0.00 0.00 NA NA 12.50 0.00 2.38 NA NA 4.76 9.52 NA 0.00 NA NA 14.29 0.00 2.70 0.00 NA 4.76 NA NA 14.29 NA NA 23.08 NA NA NA 0.00 0.00 NA 12.50 0.00 NA 0.00 6.25 NA 2.94 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 9.09 NA NA 0.00 K alternative_donor CG4365 chr3L + chr3L_20791960_20792242;chr3L_20791819_20792242;chr3L_20792100_20792242;chr3L_20792077_20792242 chr3L_20792089_20792242 chr3L_20792243_20793181;chr3L_20791802_20791818 22.22 25.00 21.05 12.90 22.22 21.43 15.00 17.24 14.29 9.09 12.00 14.71 11.11 14.29 26.09 34.78 12.50 21.05 9.52 15.09 19.05 16.67 29.41 26.32 25.00 40.00 53.33 33.33 58.33 33.33 25.00 44.44 25.00 21.43 18.18 25.00 27.78 35.71 29.41 14.81 25.00 18.92 9.09 28.57 43.75 27.78 20.69 20.00 21.62 25.00 31.58 22.22 25.93 33.33 19.05 31.82 20.00 18.18 K cassette gwl chr3R + chr3R_14574012_14574387 chr3R_14574012_14574082;chr3R_14574212_14574387 chr3R_14574083_14574211 chr3R_14573853_14574011;chr3R_14574388_14575390 17.39 12.50 20.00 7.41 28.57 30.00 17.65 17.39 14.71 21.43 11.76 19.05 25.00 10.00 17.39 25.00 22.22 14.29 36.36 12.20 NA NA 17.39 15.38 21.05 18.18 6.90 NA 9.09 10.53 30.00 NA 16.67 15.79 18.75 5.56 25.00 18.18 11.43 29.63 NA 15.79 NA 33.33 12.50 14.29 25.00 26.32 17.14 NA 16.67 15.00 18.18 17.65 30.77 11.76 18.18 11.11 K alternative_acceptor RpS3A,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87533_87673 chr4_87618_87673 chr4_87674_87863;chr4_87466_87532 100.00 100.00 99.95 99.97 100.00 100.00 100.00 99.96 100.00 100.00 100.00 99.98 100.00 100.00 99.96 99.97 100.00 100.00 100.00 99.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.92 99.90 99.90 99.96 100.00 100.00 99.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.98 99.95 100.00 100.00 100.00 100.00 99.88 100.00 100.00 99.95 100.00 99.92 100.00 100.00 100.00 100.00 100.00 K intron_retention I_chr3R_11826508_11826910,GATAe chr3R + chr3R_11843365_11843432 chr3R_11843364_11843365;chr3R_11843432_11843433 chr3R_11842431_11843364;chr3R_11843433_11843928 90.91 91.67 NA NA 80.00 NA 92.31 90.00 95.65 NA NA 93.75 94.12 90.00 88.89 100.00 100.00 90.91 88.89 92.31 NA 83.33 NA NA 100.00 87.50 90.91 NA 88.89 88.89 NA NA 90.00 94.12 83.33 87.50 93.75 NA 81.82 92.86 NA 90.48 91.67 86.67 NA NA NA 84.21 94.12 NA 92.31 NA NA NA 100.00 NA NA NA K cassette Ndae1,I_chr2L_7234342_7234526 chr2L - chr2L_7234998_7237686 chr2L_7234998_7236144;chr2L_7236352_7237686 chr2L_7236145_7236351 chr2L_7234527_7234997;chr2L_7237687_7237790 28.57 32.56 26.83 10.59 28.57 25.00 10.17 20.69 20.43 55.56 15.62 20.63 4.55 21.88 25.58 19.05 21.88 18.52 21.43 20.34 11.43 31.34 40.00 37.74 33.33 16.22 25.00 47.27 43.59 37.78 29.73 27.78 48.65 21.54 33.33 28.30 45.45 35.00 32.00 39.62 39.29 25.56 18.18 38.89 53.33 44.00 42.31 48.89 24.69 36.84 28.30 19.35 66.67 33.33 21.15 32.00 48.15 69.77 K intron_retention CG10083 chr3L - chr3L_13478641_13478702 chr3L_13478640_13478641;chr3L_13478702_13478703 chr3L_13478189_13478640;chr3L_13478703_13479401 0.00 0.00 0.00 2.63 2.27 0.00 0.00 3.12 2.60 0.00 0.00 1.54 0.00 0.00 1.67 4.26 0.00 0.00 0.00 0.00 0.00 3.03 1.87 0.00 0.00 0.00 3.16 6.56 22.03 0.00 2.13 0.00 7.55 0.00 0.00 0.00 1.89 1.39 3.88 4.26 0.00 0.00 0.00 0.00 0.00 0.00 1.43 1.79 0.00 3.45 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 K intron_retention CG3812 chrX + chrX_12660326_12661001 chrX_12660325_12660326;chrX_12661001_12661002 chrX_12660257_12660325;chrX_12661002_12661387 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA NA NA 100.00 100.00 100.00 NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA 100.00 N jcn_only_AA BM-40-SPARC,I_chr3R_22696095_22696231,I_chr3R_22696095_22696291,I_chr3R_22696095_22697413 chr3R - chr3R_22696095_22697647 chr3R_22696130_22697647 chr3R_22697648_22697767;chr3R_22695995_22696094 0.00 0.00 0.00 0.29 0.00 0.00 0.31 0.13 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.37 0.00 0.19 0.59 0.39 0.32 0.00 0.66 0.00 0.00 0.00 0.00 0.15 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 K alternative_donor CG2004,I_chrX_8608130_8608508,RI_chrX_8608147_8608508,I_chrX_8608169_8608438 chrX - chrX_8608169_8608508 chrX_8608169_8608438 chrX_8608069_8608168;chrX_8608509_8608538 3.37 0.00 2.00 2.94 5.26 5.26 8.16 3.08 4.21 3.12 5.71 3.30 2.00 2.27 4.35 2.47 3.23 4.44 5.66 2.44 2.27 8.70 6.67 4.84 2.38 3.57 5.63 5.17 12.82 2.86 3.57 7.14 2.27 2.86 1.82 2.50 3.92 2.94 4.92 1.32 0.00 3.37 2.56 6.25 2.08 5.88 5.77 7.50 4.49 1.27 7.25 3.23 5.41 2.56 4.62 2.13 4.62 0.00 K jcn_only_AD CG11248 chr3L + chr3L_21673324_21673399;chr3L_21673253_21673399 chr3L_21673333_21673399 chr3L_21673400_21675533;chr3L_21673237_21673252 65.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 65.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG10863 chr3L - chr3L_3941771_3941863 chr3L_3941770_3941771;chr3L_3941863_3941864 chr3L_3941626_3941770;chr3L_3941864_3942036 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 K alternative_donor dia chr2L + chr2L_20758386_20760524 chr2L_20758664_20760524 chr2L_20760525_20760841;chr2L_20758126_20758385 78.26 75.00 90.91 91.11 65.22 90.00 83.33 79.63 80.95 42.86 78.26 76.47 81.48 79.31 73.53 81.58 84.62 75.00 86.21 79.66 73.08 88.46 60.98 80.95 78.95 92.59 78.79 78.26 52.17 75.00 92.00 69.23 70.97 88.24 85.71 86.96 65.71 63.64 82.61 72.09 66.67 81.82 68.97 73.91 76.92 93.33 88.89 84.38 74.55 65.22 76.67 71.43 66.67 75.00 77.78 84.62 64.71 77.78 K alternative_acceptor tomosyn,I_chrX_12527065_12527950,I_chrX_12531219_12531470,I_chrX_12534873_12541731,I_chrX_12548772_12549203 chrX + chrX_12527991_12529764 chrX_12527991_12529731 chrX_12527964_12527990;chrX_12529765_12530316 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD ref(2)P,RI_chr2L_19545002_19545062,I_chr2L_19545002_19545156,EI_chr2L_19548696_19549582 chr2L + chr2L_19545002_19545156 chr2L_19545102_19545156 chr2L_19545157_19545162;chr2L_19544902_19545001 99.72 99.56 100.00 99.71 100.00 99.11 100.00 99.66 99.77 99.19 98.94 99.56 100.00 100.00 100.00 98.42 100.00 98.97 100.00 99.39 99.01 99.47 100.00 99.64 99.71 100.00 100.00 100.00 97.56 100.00 100.00 100.00 99.59 99.70 99.67 99.66 99.46 100.00 99.83 100.00 99.54 99.77 99.43 99.68 99.72 100.00 99.81 98.57 100.00 99.84 99.79 100.00 99.53 99.72 99.16 99.46 100.00 100.00 K alternative_donor Gmap,I_chrX_15400854_15401194,I_chrX_15402291_15403750,mir-304,mir-12 chrX + chrX_15401627_15403750 chrX_15402291_15403750 chrX_15403751_15403850;chrX_15401423_15401626 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 2.56 0.00 0.00 0.00 1.41 0.00 0.00 0.00 1.67 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 1.75 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 N intron_retention klar,I_chr3L_462559_472609,RI_chr3L_517594_539898 chr3L - chr3L_453996_454108 chr3L_453995_453996;chr3L_454108_454109 chr3L_454109_454405 100.00 NA NA 100.00 NA NA 100.00 100.00 NA NA NA 36.84 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG3714,I_chr2L_4190825_4191774,I_chr2L_4191897_4192115,I_chr2L_4191897_4192632,I_chr2L_4192178_4192632,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4190825_4193309 chr2L_4190824_4190825;chr2L_4193309_4193310 chr2L_4190725_4190824;chr2L_4193310_4193481 1.45 3.03 0.00 0.00 0.00 0.00 3.31 2.56 3.61 0.00 3.57 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 4.76 4.43 2.40 0.00 0.00 1.90 4.44 3.03 4.29 0.00 0.00 7.25 2.35 1.45 0.00 5.19 2.04 2.13 3.19 1.89 1.92 0.00 4.76 0.00 1.19 1.19 7.55 2.60 1.32 3.85 4.84 0.00 0.97 0.00 1.27 0.00 3.39 K alternative_donor CG10743 chr3L + chr3L_13506498_13506581 chr3L_13506518_13506581 chr3L_13506582_13506892;chr3L_13506449_13506497 97.62 NA NA 90.00 NA NA 100.00 100.00 70.00 NA NA 100.00 NA NA 100.00 NA NA NA 100.00 NA NA 85.71 NA NA NA 100.00 NA NA NA 100.00 87.50 NA 95.24 100.00 NA NA NA NA NA 90.00 NA 91.67 NA 87.50 90.91 NA NA 92.86 100.00 NA NA NA NA NA NA NA NA 100.00 K intron_retention Cdk4,RI_chr2R_12471503_12471656 chr2R + chr2R_12467432_12468346 chr2R_12467431_12467432;chr2R_12468346_12468347 chr2R_12466986_12467431;chr2R_12468347_12468520 16.13 NA 0.00 22.73 NA 33.33 21.05 9.38 12.12 NA 30.77 22.22 12.50 12.50 6.67 16.67 14.29 NA 20.00 12.24 NA 17.65 23.08 NA NA NA NA NA NA NA 20.00 NA NA 20.69 25.00 14.29 NA NA NA NA NA 19.35 NA NA NA 5.26 NA NA 16.13 22.22 6.67 NA NA 30.77 11.76 5.88 0.00 12.50 K intron_retention Atx-1_CG4542,Smg1 chrX + chrX_6731063_6731133 chrX_6731062_6731063;chrX_6731133_6731134 chrX_6730714_6731062;chrX_6731134_6732020 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 6.06 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 K alternative_donor prominin-like,I_chr3L_3116032_3116690,I_chr3L_3121200_3123087 chr3L - chr3L_3116032_3117082 chr3L_3116032_3116690 chr3L_3115932_3116031;chr3L_3117083_3117256 0.13 0.00 0.25 0.54 0.28 0.20 0.52 0.73 0.32 0.00 0.61 0.34 0.31 0.27 0.38 0.32 0.00 0.22 0.00 0.16 0.00 0.14 0.00 0.15 0.19 0.00 0.18 0.33 0.21 0.00 0.23 0.12 0.00 0.33 0.00 0.00 0.00 0.00 0.10 0.07 0.00 0.20 0.00 0.00 0.08 0.09 0.15 0.11 0.24 0.00 0.13 0.00 0.00 0.00 0.18 0.20 0.00 0.08 K intron_retention CG5554,gbb chr2R + chr2R_19733464_19733650 chr2R_19733463_19733464;chr2R_19733650_19733651 chr2R_19733289_19733463;chr2R_19733651_19734547 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.37 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.32 0.55 0.00 0.00 0.00 0.60 1.65 1.45 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.53 0.00 0.00 0.00 K intron_retention CG32027 chr3L + chr3L_18835249_18835313 chr3L_18835248_18835249;chr3L_18835313_18835314 chr3L_18834679_18835248;chr3L_18835314_18835366 0.00 NA 7.69 7.41 NA NA 12.50 0.00 11.43 NA NA 7.14 NA NA NA 11.54 NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA 12.00 NA NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA NA NA 0.00 K intron_retention skpA chrX + chrX_550433_550492 chrX_550432_550433;chrX_550492_550493 chrX_550426_550432;chrX_550493_550497 100.00 100.00 100.00 98.31 100.00 100.00 100.00 98.15 97.50 NA 100.00 96.97 100.00 95.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 97.87 100.00 100.00 100.00 94.74 NA 100.00 100.00 100.00 100.00 K intron_retention puc,CG7878,I_chr3R_3952846_3953762 chr3R + chr3R_3937024_3946233 chr3R_3937023_3937024;chr3R_3946233_3946234 chr3R_3936799_3937023;chr3R_3946234_3948023 15.25 15.25 29.55 10.77 25.00 23.08 17.19 13.85 26.45 9.59 13.16 24.72 24.39 28.57 20.69 30.22 27.78 21.74 28.26 20.22 25.97 18.72 17.24 9.62 12.39 16.33 10.43 9.77 18.94 12.50 22.50 9.68 14.44 26.80 24.14 5.41 15.61 11.81 13.41 14.47 10.00 23.81 18.57 13.08 9.88 6.98 9.28 14.94 21.23 8.06 15.25 20.21 9.52 9.33 19.84 5.56 7.23 10.26 K jcn_only_AA I_chr2R_19695638_19696332,Nxt1,RI_chr2R_19699261_19699317,CG4797 chr2R - chr2R_19699248_19699317 chr2R_19699261_19699317 chr2R_19699318_19699386;chr2R_19699179_19699247 10.82 10.88 8.47 11.85 10.71 6.77 14.73 13.01 7.09 5.88 8.57 9.71 6.41 8.99 3.79 10.08 2.00 9.46 4.85 11.56 15.58 13.67 10.47 12.50 8.00 16.07 10.40 10.53 19.81 11.81 26.42 16.29 10.89 10.53 13.22 13.81 9.88 11.05 13.19 9.17 10.82 8.09 10.61 9.50 15.46 11.15 12.86 11.11 7.49 11.48 14.17 9.84 13.43 9.47 9.30 12.40 13.17 14.35 K intron_retention CG12822,CG12821 chr2R + chr2R_3720682_3720735 chr2R_3720681_3720682;chr2R_3720735_3720736 chr2R_3720401_3720681;chr2R_3720736_3721324 4.13 5.00 5.63 8.33 0.00 0.00 4.55 4.44 2.86 0.00 3.92 6.67 6.67 1.79 6.15 4.55 0.00 3.12 3.64 4.66 6.25 1.09 8.22 5.06 5.00 5.26 7.41 8.82 25.58 0.00 6.80 6.06 0.00 2.33 2.13 7.46 3.77 3.08 3.03 4.49 3.92 3.94 6.38 2.99 0.00 4.95 4.29 0.00 3.45 4.84 2.60 2.17 7.25 4.04 0.00 5.63 4.13 3.85 K jcn_only_AA Nedd4,I_chr3L_17534127_17534409,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17534127_17534409 chr3L_17534127_17534400 chr3L_17534027_17534126;chr3L_17534410_17534503 98.88 100.00 99.01 99.06 100.00 100.00 98.09 99.53 100.00 98.97 98.63 98.96 98.81 99.07 98.91 97.92 97.62 99.05 99.04 99.25 100.00 100.00 98.88 99.33 98.02 98.29 98.96 98.68 95.97 99.22 99.08 98.67 98.80 97.65 98.00 94.34 98.56 99.14 98.43 98.91 94.94 97.30 100.00 99.38 97.74 100.00 98.31 97.26 99.02 96.39 98.24 100.00 98.04 97.50 95.93 95.60 94.74 100.00 K intron_retention CG8786 chr3L - chr3L_19631646_19632983 chr3L_19631645_19631646;chr3L_19632983_19632984 chr3L_19630954_19631645;chr3L_19632984_19633418 72.73 87.50 100.00 92.31 NA 90.91 76.67 78.95 84.62 NA NA 44.44 50.00 70.00 88.89 62.50 NA NA 75.00 56.25 NA 90.00 72.73 72.73 73.33 87.50 72.73 63.64 52.38 71.43 60.00 60.00 68.42 89.47 NA 100.00 66.67 NA 72.73 70.83 26.67 76.92 NA 55.56 58.82 34.62 NA 52.63 83.33 NA 71.43 NA NA NA 90.91 NA NA 52.63 K alternative_acceptor klett chrX - chrX_21497280_21497339 chrX_21497298_21497339 chrX_21497340_21497917;chrX_21497037_21497279 0.97 1.36 0.00 0.79 0.00 0.00 1.46 1.40 0.00 0.00 1.23 1.04 0.00 0.00 0.73 1.19 0.00 0.00 0.00 0.97 0.94 2.67 0.58 1.27 2.50 0.94 1.36 3.31 1.36 1.55 0.00 2.20 1.00 1.19 0.00 7.87 1.40 1.61 1.28 0.74 3.23 0.45 0.00 0.00 0.00 1.24 1.31 1.09 0.96 1.23 0.70 1.52 1.59 0.79 0.00 0.00 0.61 1.17 K intron_retention Tsp97E chr3R - chr3R_22788174_22788879 chr3R_22788173_22788174;chr3R_22788879_22788880 chr3R_22787748_22788173;chr3R_22788880_22789206 0.00 1.47 0.00 0.00 0.00 0.00 1.64 1.67 2.86 0.00 2.50 0.86 0.00 6.45 0.00 0.00 0.00 0.00 2.56 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 1.56 1.35 0.00 0.00 2.02 0.00 0.00 3.03 0.00 2.22 0.00 1.54 2.70 3.70 0.00 5.26 2.50 0.00 1.89 1.96 5.13 0.00 0.00 1.82 0.00 0.00 K alternative_donor Tsp66E chr3L + chr3L_8905872_8906068;chr3L_8905697_8906068 chr3L_8905846_8906068 chr3L_8906069_8906085;chr3L_8905674_8905696 60.00 NA NA 60.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG6686 chr2L - chr2L_11987388_11987695;chr2L_11987495_11987695 chr2L_11987513_11987695 chr2L_11987696_11988035 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24351030_24351138 chr3R_24351029_24351030;chr3R_24351138_24351139 chr3R_24350630_24351029;chr3R_24351139_24351309 0.00 0.00 0.00 6.78 2.86 6.45 5.26 4.29 1.67 10.53 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 4.17 0.00 0.00 3.12 0.00 0.00 0.00 4.08 NA 0.00 4.76 0.00 NA 0.00 0.00 0.00 5.45 1.37 0.00 0.00 1.79 4.55 1.72 0.00 0.00 NA 3.03 0.00 4.35 5.00 NA 9.30 0.00 0.00 5.56 4.55 0.00 0.00 0.00 K intron_retention Pak,RI_chr3R_2181143_2181934 chr3R + chr3R_2177074_2180635 chr3R_2177073_2177074;chr3R_2180635_2180636 chr3R_2176819_2177073;chr3R_2180636_2180902 44.00 56.25 59.09 75.00 60.00 57.50 42.50 48.00 56.92 26.32 28.00 61.40 34.48 61.76 58.70 55.56 62.50 34.88 61.76 52.73 36.67 82.61 43.64 47.37 46.88 43.18 52.63 50.00 38.46 44.00 39.13 30.77 36.59 53.33 47.37 45.95 40.91 35.71 42.86 30.51 26.09 56.63 53.12 43.59 12.50 19.35 38.89 34.04 59.46 35.29 50.85 48.15 39.13 30.00 47.83 28.57 30.00 21.88 K jcn_only_AA CG7145,I_chr3L_21832928_21833150,I_chr3L_21832932_21833106 chr3L - chr3L_21832928_21833150 chr3L_21832932_21833150 chr3L_21833151_21833168;chr3L_21832832_21832927 96.88 NA NA NA NA NA 100.00 95.45 96.88 NA NA 100.00 NA NA NA 100.00 NA NA NA 96.15 NA NA NA NA NA 95.24 NA NA NA NA NA NA NA 96.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD larp,F_chr3R_24151542_24153876,I_chr3R_24160430_24160932,I_chr3R_24160430_24160971,RI_chr3R_24160430_24161527 chr3R - chr3R_24160430_24160932;chr3R_24160430_24160971;chr3R_24160430_24160975;chr3R_24160430_24160979;chr3R_24160430_24161939;chr3R_24160430_24161527 chr3R_24160430_24161729 chr3R_24160330_24160429;chr3R_24161940_24162125 61.06 66.67 63.76 72.50 60.95 61.39 70.70 71.23 66.15 59.55 60.92 66.25 70.16 72.00 68.18 68.78 68.06 67.44 66.26 60.47 62.04 58.82 59.77 57.97 52.87 63.81 63.06 76.19 38.78 54.62 64.34 52.17 61.24 70.17 61.06 49.58 51.41 54.72 59.70 50.00 58.02 61.64 62.88 47.06 50.00 49.09 66.67 42.69 56.11 61.54 51.48 61.86 50.51 59.62 64.20 55.56 60.49 46.31 K alternative_acceptor Mvl,E_chr3R_16880765_16881066 chr3R - chr3R_16878968_16881066 chr3R_16879341_16881066 chr3R_16881067_16881137;chr3R_16878926_16878967 21.11 NA NA 20.00 NA NA 33.33 12.00 33.33 NA NA 37.50 NA NA NA 37.50 NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA 22.22 NA NA NA NA NA 10.00 NA 18.18 NA NA NA NA NA NA 30.00 NA NA NA NA NA NA NA NA 10.00 N jcn_only_AD CG17233,RI_chr3L_20232898_20232962 chr3L - chr3L_20233633_20234944;chr3L_20233633_20234218;chr3L_20233633_20234418 chr3L_20233633_20234374 chr3L_20232963_20233632;chr3L_20234945_20234989 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG6568,RI_chr2R_13294561_13294634 chr2R - chr2R_13293489_13293541 chr2R_13293488_13293489;chr2R_13293541_13293542 chr2R_13292824_13293488;chr2R_13293542_13294306 0.00 0.00 12.00 13.33 NA 0.00 8.57 6.25 5.13 NA 6.67 0.00 NA NA 3.57 6.25 0.00 0.00 0.00 0.00 NA 6.25 0.00 5.26 0.00 0.00 0.00 20.00 4.00 0.00 0.00 0.00 6.25 7.69 0.00 NA 0.00 0.00 0.00 0.00 3.85 2.94 NA 0.00 0.00 6.25 14.29 0.00 6.82 3.23 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 K jcn_only_AA sgg,I_chrX_2529065_2563945,I_chrX_2536127_2563666,I_chrX_2552903_2553180,I_chrX_2555127_2563666,I_chrX_2561695_2562135,I_chrX_2563342_2563666,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2536127_2539408;chrX_2536127_2563666 chrX_2536127_2563945 chrX_2536027_2536126 95.35 100.00 95.83 92.86 91.53 94.12 93.90 97.18 97.37 94.55 96.23 93.94 93.55 88.71 96.74 92.19 98.00 98.08 96.83 96.45 93.88 94.74 93.81 97.96 95.95 92.75 94.44 87.10 95.31 94.39 92.16 97.56 97.20 92.42 92.98 97.20 96.30 94.12 96.08 95.59 90.32 95.54 95.00 96.10 89.33 93.40 97.53 94.02 94.67 95.45 97.62 95.45 92.98 100.00 95.65 95.35 98.39 96.26 K intron_retention Tao-1,I_chrX_19471628_19472934 chrX - chrX_19471628_19473780 chrX_19471627_19471628;chrX_19473780_19473781 chrX_19471528_19471627;chrX_19473781_19473835 88.89 77.78 87.50 82.76 100.00 80.00 80.56 80.00 86.54 91.67 100.00 100.00 89.47 95.00 82.61 78.12 94.12 77.78 84.62 72.00 95.00 87.88 100.00 88.89 100.00 86.96 100.00 NA 92.31 100.00 85.71 NA 86.96 87.88 92.31 91.67 94.12 90.00 100.00 95.45 100.00 82.93 92.86 NA 85.71 72.73 NA 82.61 85.42 NA 90.00 90.91 NA NA 88.00 NA 100.00 72.73 K jcn_only_AD Nedd4,I_chr3L_17526753_17527450,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17526753_17527450;chr3L_17526749_17527450 chr3L_17526950_17527450 chr3L_17527451_17527550;chr3L_17526708_17526748 15.38 NA 20.83 25.93 NA 4.76 18.52 8.82 25.49 NA NA 15.38 30.43 NA 0.00 22.58 NA 18.52 14.81 15.38 36.36 NA 19.51 NA 13.89 21.43 9.52 NA 5.00 NA 12.00 NA NA 29.73 NA NA NA NA 20.83 NA NA 10.34 5.00 30.00 NA 12.50 NA 14.71 10.53 NA 18.52 24.00 NA NA 7.14 NA NA 8.70 K intron_retention Nedd4,I_chr3L_17526753_17527450,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17526950_17527450 chr3L_17526949_17526950;chr3L_17527450_17527451 chr3L_17526851_17526949;chr3L_17527451_17527550 66.19 NA NA 68.75 NA NA 76.47 85.71 55.00 NA NA 69.23 61.54 77.78 NA 76.19 60.00 NA 72.73 50.00 NA NA 57.14 NA NA 55.56 NA NA NA NA NA NA NA 60.00 80.00 NA NA NA NA 58.33 NA 75.00 NA NA NA NA NA 63.64 71.43 NA 63.64 60.00 NA NA 90.00 NA NA NA K multi_cassette shot,I_chr2R_9754481_9757364,I_chr2R_9762249_9762363,I_chr2R_9771216_9771599,I_chr2R_9782813_9785143,I_chr2R_9782813_9788941,I_chr2R_9791078_9791208 chr2R - chr2R_9770053_9788941 chr2R_9770053_9771599;chr2R_9782098_9782343;chr2R_9782475_9786954;chr2R_9787177_9787870;chr2R_9787955_9788941 chr2R_9771600_9782097;chr2R_9782344_9782474;chr2R_9786955_9787176;chr2R_9787871_9787954 chr2R_9769906_9770052;chr2R_9788942_9789041 75.28 75.51 75.21 83.71 83.16 81.25 78.28 81.82 82.71 72.29 67.68 71.93 96.92 82.55 82.26 77.29 68.31 80.00 79.87 73.27 71.79 59.22 72.48 78.75 66.32 85.37 82.91 93.22 80.23 73.39 74.47 64.29 70.50 82.57 70.73 86.49 78.85 66.10 75.28 80.80 63.16 79.84 81.82 65.29 75.00 56.52 64.29 73.17 85.79 41.67 81.75 75.86 74.19 71.43 82.32 64.71 46.15 73.91 K jcn_only_AD None chrU - chrU_4029374_4029432;chrU_4029374_4029436 chrU_4029374_4029489 97.29 95.68 97.67 98.13 96.82 96.72 99.24 97.56 97.11 96.65 99.19 96.31 98.95 97.03 98.04 97.96 98.45 96.80 97.69 96.32 96.40 91.53 97.30 96.72 99.19 99.02 98.90 96.88 89.93 96.72 96.99 95.79 96.46 98.07 99.01 97.84 97.67 94.51 95.15 95.39 96.32 98.70 100.00 97.33 97.25 94.90 97.30 94.06 97.29 98.50 98.64 96.12 97.24 96.55 97.97 98.50 97.35 97.79 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2388436;chrX_2388671_2389073;chrX_2389272_2389644;chrX_2389762_2393243 chrX_2388437_2388670;chrX_2389074_2389271;chrX_2389645_2389761 chrX_2387149_2387248;chrX_2393244_2393291 16.67 NA NA NA NA NA NA NA 28.57 NA NA 12.20 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 11.11 NA NA 12.50 NA 33.33 NA 28.57 NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA K alternative_donor Hsc70-3,I_chrX_11699076_11699138,I_chrX_11699076_11699158,I_chrX_11699076_11699260,EI_chrX_11699076_11699573,I_chrX_11699076_11700062 chrX - chrX_11699076_11699321;chrX_11699076_11699335 chrX_11699076_11699923 chrX_11698976_11699075;chrX_11699924_11699938 7.69 16.67 14.29 10.53 12.50 0.00 5.26 6.25 0.00 0.00 12.50 6.67 9.09 11.11 11.11 0.00 0.00 14.29 10.00 17.65 14.29 7.69 10.00 8.33 12.50 11.11 0.00 0.00 0.00 11.11 0.00 14.29 0.00 13.33 0.00 0.00 10.00 14.29 0.00 11.11 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 11.11 0.00 0.00 33.33 10.00 14.29 9.09 5.56 K intron_retention Cap-G,CG34439 chr2R + chr2R_9046352_9046521 chr2R_9046351_9046352;chr2R_9046521_9046522 chr2R_9046272_9046351;chr2R_9046522_9046608 2.04 2.27 3.24 3.20 1.98 1.09 3.33 2.63 2.74 4.29 1.54 1.79 3.40 1.82 1.75 1.84 2.99 1.57 2.48 2.04 2.48 5.71 3.72 0.89 1.43 1.22 3.43 3.12 2.06 4.21 0.80 2.33 6.38 1.79 0.61 1.45 5.52 1.48 1.44 3.92 0.00 2.54 2.99 7.09 1.59 0.82 0.00 3.45 1.23 1.96 2.31 1.83 0.00 0.31 2.23 0.82 0.00 2.63 K intron_retention CG1416,I_chr2L_21758100_21758179,I_chr2L_21758143_21758183,I_chr2L_21758143_21758209 chr2L + chr2L_21758143_21758201 chr2L_21758142_21758143;chr2L_21758201_21758202 chr2L_21758116_21758142;chr2L_21758202_21758279 78.65 75.32 72.22 85.00 69.84 72.50 82.59 81.76 76.72 81.82 79.86 77.37 80.25 80.40 85.84 82.93 70.63 68.16 80.85 74.53 78.57 57.45 84.79 71.36 84.85 88.66 86.41 80.61 88.24 81.01 80.17 69.66 78.87 76.81 81.15 95.30 71.98 66.90 73.10 62.28 86.19 82.13 80.00 69.95 70.49 81.42 75.60 79.39 78.77 70.27 76.44 77.30 78.65 77.72 71.17 71.49 77.63 79.47 K intron_retention dlg1,I_chrX_11298230_11299306 chrX + chrX_11283731_11284263 chrX_11283730_11283731;chrX_11284263_11284264 chrX_11283729_11283730;chrX_11284264_11284573 95.00 95.00 95.45 97.50 94.74 92.86 100.00 97.78 97.44 100.00 92.86 93.88 95.65 96.43 93.55 98.11 96.43 86.96 89.66 96.49 94.12 94.74 97.30 95.83 100.00 77.78 93.55 100.00 90.91 100.00 93.75 87.50 97.30 95.56 93.10 96.97 95.24 87.50 94.74 96.67 88.89 94.64 95.65 95.00 NA 94.74 93.33 95.24 89.29 100.00 95.00 95.45 86.67 91.67 96.97 91.67 92.86 92.86 K alternative_last_exon RN-tre chr2R - chr2R_9873550_9875877,chr2R_9873601_9875877 chr2R_9874977_9875877 chr2R_9873495_9873549 chr2R_9873834_9874976 chr2R_9875878_9875942 59.74 60.00 61.97 44.91 53.93 57.69 59.74 59.31 64.34 36.36 71.93 59.22 52.78 63.21 57.03 77.09 66.67 47.06 55.93 61.23 70.80 41.48 65.64 60.40 59.76 43.37 59.71 44.93 65.35 66.18 53.79 57.94 65.03 60.68 58.82 50.51 64.33 56.67 56.57 56.74 55.94 60.33 59.14 56.43 59.42 66.52 64.75 64.61 66.24 71.11 55.36 56.47 69.81 65.18 54.35 63.64 78.26 75.91 K intron_retention I_chr2R_19922148_19922210,I_chr2R_19939693_19939776,CG13563,I_chr2R_19946299_19946454,I_chr2R_19946657_19946733,I_chr2R_19948517_19948682 chr2R + chr2R_19943413_19943475 chr2R_19943412_19943413;chr2R_19943475_19943476 chr2R_19943213_19943412;chr2R_19943476_19944300 100.00 NA 100.00 NA NA NA NA NA 100.00 NA NA 100.00 NA NA 100.00 100.00 NA 100.00 100.00 96.30 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 K alternative_acceptor CG34413,RI_chr2R_20769295_20770153,I_chr2R_20771136_20772048,I_chr2R_20773500_20774745 chr2R + chr2R_20769150_20770158 chr2R_20769150_20770153 chr2R_20769141_20769149;chr2R_20770159_20770253 86.00 87.18 92.50 82.35 78.95 86.00 88.10 83.72 81.61 88.89 83.33 83.33 81.25 88.89 91.11 86.21 88.89 84.85 82.05 85.25 82.86 93.10 86.11 87.23 89.29 89.47 91.18 95.24 86.21 84.21 88.64 75.00 90.91 85.96 76.47 92.31 89.06 84.38 84.78 84.29 NA 86.02 87.88 86.67 93.33 80.00 93.75 93.33 85.37 85.19 81.82 78.79 85.71 100.00 84.38 78.26 83.33 NA K jcn_only_AA Cap-H2 chr3R + chr3R_6589674_6589835;chr3R_6589674_6589871 chr3R_6589674_6589832 chr3R_6588751_6589673;chr3R_6589872_6590095 43.96 NA NA 57.14 NA 45.00 NA 43.48 NA NA NA 58.06 NA NA NA NA NA NA 71.43 25.00 NA NA NA NA NA 30.00 NA NA NA NA NA NA NA 29.17 NA NA NA NA NA NA NA 44.44 NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor smid,I_chr3L_7375166_7375310,I_chr3L_7375435_7375508 chr3L + chr3L_7375435_7375508 chr3L_7375435_7375486 chr3L_7375335_7375434;chr3L_7375509_7375574 100.00 100.00 97.96 100.00 97.67 97.30 100.00 98.82 100.00 100.00 100.00 98.99 97.73 97.50 98.15 98.98 100.00 100.00 100.00 99.24 100.00 100.00 100.00 98.18 100.00 100.00 100.00 97.73 97.78 100.00 100.00 95.24 100.00 98.61 100.00 100.00 95.12 100.00 100.00 98.73 97.37 100.00 100.00 98.31 100.00 100.00 100.00 98.28 98.94 100.00 100.00 100.00 95.83 100.00 98.55 100.00 100.00 100.00 K alternative_donor Rho1,I_chr2R_11990455_11992537,RI_chr2R_11991687_11992537 chr2R + chr2R_11990326_11991115;chr2R_11990814_11991115;chr2R_11990398_11991115 chr2R_11990362_11991115 chr2R_11991116_11991279;chr2R_11990232_11990325 4.71 7.21 3.25 4.71 4.00 3.39 3.74 6.52 1.80 8.16 6.11 7.97 7.18 8.77 11.67 1.89 6.72 4.00 8.78 2.04 3.74 8.70 4.55 3.16 6.35 3.81 10.77 3.80 2.90 5.88 3.37 4.62 6.38 1.99 2.41 3.51 11.39 8.33 3.57 3.03 4.35 4.15 9.09 8.00 8.00 4.12 8.85 4.76 3.00 8.42 1.83 6.80 9.59 5.36 5.06 4.72 3.51 1.87 K intron_retention Mocs1 chr3L + chr3L_11065511_11065569 chr3L_11065510_11065511;chr3L_11065569_11065570 chr3L_11064659_11065510;chr3L_11065570_11066464 9.52 0.00 16.67 7.41 NA 0.00 18.42 0.00 15.38 0.00 NA 0.00 NA NA 10.53 30.56 NA 19.05 13.64 16.67 NA 23.21 14.29 0.00 11.54 0.00 3.85 9.30 13.46 10.53 6.67 7.32 18.18 9.09 NA 10.53 0.00 0.00 0.00 4.65 17.31 15.15 NA 4.88 13.21 15.15 7.69 7.14 18.52 3.70 6.90 12.50 NA NA 11.76 0.00 9.52 26.67 K intron_retention None chrU + chrU_1179201_1179256 chrU_1179200_1179201;chrU_1179256_1179257 0.00 0.00 1.69 2.70 0.00 0.00 1.54 0.00 0.62 0.00 0.00 1.65 0.00 0.00 0.00 1.64 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 1.64 1.19 0.00 0.00 0.00 0.61 1.12 1.15 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.52 0.00 0.00 0.00 1.67 1.23 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 K jcn_only_AA CCS,I_chr2R_6009946_6010014 chr2R - chr2R_6009946_6010014;chr2R_6009951_6010014 chr2R_6009964_6010014 chr2R_6010015_6010040;chr2R_6009884_6009945 95.00 NA NA 82.61 NA NA 95.45 95.83 96.67 NA NA 85.71 NA NA NA NA NA NA 90.00 93.10 NA NA NA NA NA 95.00 NA NA NA NA 86.67 NA NA NA NA NA NA NA NA 100.00 NA 94.12 NA NA 100.00 95.45 90.00 NA 96.43 NA NA NA NA 95.00 NA NA 96.77 90.00 K intron_retention RI_chr3L_21188731_21188785,CG33054,CG33056 chr3L - chr3L_21192505_21193094 chr3L_21192504_21192505;chr3L_21193094_21193095 chr3L_21192346_21192504;chr3L_21193095_21193430 4.88 5.41 4.88 13.16 0.00 0.00 4.65 0.00 7.69 0.00 10.53 6.56 10.53 2.94 0.00 9.52 2.70 21.43 13.33 4.92 7.14 7.02 1.32 5.17 11.76 4.55 10.00 4.65 0.00 4.08 11.11 3.23 8.51 7.14 10.71 27.78 4.12 12.50 2.90 4.76 5.00 9.09 3.12 7.02 2.27 3.92 4.00 3.70 7.59 5.00 8.00 3.03 0.00 0.00 6.00 0.00 2.44 0.00 K jcn_only_AA CG33298 chr2L + chr2L_9495712_9503592 chr2L_9495712_9496144 chr2L_9495472_9495711 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_donor CG17233,RI_chr3L_20232898_20232962 chr3L - chr3L_20233633_20234218;chr3L_20233633_20234418;chr3L_20233633_20234374 chr3L_20233633_20234944 chr3L_20232963_20233632;chr3L_20234945_20234989 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32685,CREI_chrX_9967445_9972518 chrX - chrX_9969107_9969176 chrX_9969106_9969107;chrX_9969176_9969177 chrX_9969009_9969106;chrX_9969177_9969660 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA K intron_retention SdhA,I_chr2R_15283283_15283411,cer,I_chr2R_15311185_15312327,I_chr2R_15311303_15312026 chr2R - chr2R_15284068_15284128 chr2R_15284067_15284068;chr2R_15284128_15284129 chr2R_15283716_15284067;chr2R_15284129_15284275 2.60 2.94 2.86 3.77 0.88 1.49 2.31 4.12 2.44 2.94 2.38 2.93 3.39 3.94 4.58 2.25 0.94 1.03 3.25 2.04 1.59 2.60 4.17 0.00 13.04 4.39 5.71 0.00 3.53 3.57 3.28 1.17 0.00 2.59 3.64 0.00 1.54 0.00 2.78 2.07 2.80 2.43 2.46 2.91 0.64 1.57 6.52 1.42 2.17 4.84 3.77 0.00 1.69 3.12 3.05 3.28 3.90 2.33 K jcn_only_AA Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911865_5913354;chr2R_5911803_5913354;chr2R_5911708_5913354 chr2R_5911755_5913354 chr2R_5913355_5913433;chr2R_5911703_5911707 3.46 NA 3.70 NA 0.00 NA NA 4.88 2.13 NA NA 3.23 NA 10.00 NA 4.00 0.00 NA 3.70 9.38 0.00 NA 0.00 NA NA NA NA NA NA 0.00 5.00 NA NA 5.41 NA NA NA NA NA 6.90 NA 0.00 NA 6.45 NA NA NA NA 0.00 NA NA NA NA NA 3.23 NA NA NA K intron_retention Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16106466_16106984 chr3L_16106465_16106466;chr3L_16106984_16106985 chr3L_16106332_16106465;chr3L_16106985_16107241 50.00 53.33 52.17 50.00 50.00 71.43 42.11 57.58 48.98 69.23 41.18 45.95 45.45 52.63 57.69 51.43 47.37 50.00 25.93 53.45 52.94 84.85 45.28 57.50 40.00 50.00 50.00 65.00 57.14 45.45 43.75 35.29 62.50 48.15 44.00 50.00 51.72 52.17 37.04 30.56 40.00 42.86 33.33 56.25 50.00 41.67 50.00 57.14 56.00 52.63 46.88 58.06 56.25 50.00 34.48 65.00 50.00 69.23 K jcn_only_AA Synd chr3R + chr3R_16664346_16664400 chr3R_16664346_16664397 chr3R_16664235_16664345;chr3R_16664401_16664609 55.51 62.73 52.54 55.77 51.15 50.88 59.72 56.55 53.79 45.21 56.45 57.38 53.40 61.32 56.30 61.64 51.67 57.50 64.93 51.58 65.49 59.24 50.62 51.74 53.26 59.50 53.98 61.64 52.63 58.06 56.78 55.77 51.94 55.75 53.78 51.26 52.42 55.49 52.13 56.25 52.08 55.51 56.38 50.99 60.81 59.38 52.41 50.97 57.92 57.14 54.00 54.26 52.90 65.93 52.87 50.70 59.78 62.94 K intron_retention brat,I_chr2L_19134277_19143634,RI_chr2L_19145845_19146761 chr2L + chr2L_19158756_19166084 chr2L_19158755_19158756;chr2L_19166084_19166085 chr2L_19158747_19158755;chr2L_19166085_19166125 1.19 0.00 0.00 1.72 0.00 4.55 2.99 1.27 1.83 0.00 1.64 2.24 2.22 1.47 1.37 4.95 2.25 0.00 0.89 1.11 0.00 1.89 1.75 1.59 0.00 0.00 1.00 12.00 4.35 1.87 0.00 NA 2.04 1.39 0.00 0.00 2.70 0.00 0.00 5.41 0.00 1.40 0.00 0.78 NA 0.00 0.00 4.08 0.97 4.88 3.90 0.00 NA NA 0.00 0.00 0.00 NA K intron_retention CG11870,I_chr3R_6118436_6118840,I_chr3R_6124314_6124732 chr3R + chr3R_6118436_6118915 chr3R_6118435_6118436;chr3R_6118915_6118916 chr3R_6118336_6118435;chr3R_6118916_6118940 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 NA 18.00 0.00 0.00 0.00 NA 0.00 3.33 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AD CG6700 chr2L - chr2L_10842274_10842384 chr2L_10842274_10842380 chr2L_10840867_10842273;chr2L_10842385_10842626 91.44 85.37 85.29 88.19 92.86 91.67 86.21 90.52 90.38 NA 92.31 88.61 95.45 84.62 92.59 100.00 92.96 98.21 92.68 91.46 80.56 95.12 90.91 85.00 92.31 91.23 82.22 96.00 95.65 92.59 91.43 NA 100.00 90.11 92.31 89.19 94.29 NA 86.96 96.83 NA 88.07 85.42 93.62 NA 95.65 88.00 85.29 84.71 NA 86.89 85.29 NA NA 92.86 96.88 100.00 NA K alternative_acceptor Spn5,CG6687 chr3R - chr3R_11030270_11032070 chr3R_11030273_11032070 chr3R_11032071_11032377;chr3R_11029272_11030269 76.31 78.31 75.24 74.24 73.91 79.19 75.40 77.64 77.01 76.42 76.33 79.69 75.00 76.71 80.45 74.70 77.25 77.91 80.41 74.48 77.00 74.44 75.57 76.81 75.57 77.72 75.43 63.57 73.35 77.01 74.17 66.01 73.65 77.36 78.31 79.51 75.74 77.54 81.58 73.69 76.57 75.64 74.29 74.48 75.07 77.06 75.80 68.42 77.46 76.04 76.31 78.73 75.53 75.41 78.65 79.59 79.29 65.73 K jcn_only_AA dlp chr3L + chr3L_14663174_14663275 chr3L_14663174_14663272 chr3L_14663084_14663173;chr3L_14663276_14663347 100.00 NA NA 100.00 NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 96.88 100.00 NA 100.00 100.00 100.00 100.00 NA NA 97.22 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 NA 100.00 NA 95.45 100.00 100.00 NA NA 100.00 NA NA NA NA NA NA NA K jcn_only_AA CG32582,I_chrX_15730402_15730457 chrX + chrX_15730431_15730557 chrX_15730431_15730489 chrX_15730315_15730430;chrX_15730558_15730707 16.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 29.17 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA 19.23 NA 17.24 NA 7.14 NA NA NA NA 17.65 NA 22.73 NA NA 21.74 NA 4.76 15.62 12.50 K alternative_donor Vha68-2 chr2L + chr2L_12974422_12975613 chr2L_12974444_12975613 chr2L_12975614_12975712;chr2L_12974385_12974421 100.00 98.11 100.00 98.26 100.00 98.68 99.19 99.26 100.00 100.00 98.70 98.91 98.11 98.21 98.91 99.48 100.00 98.75 100.00 99.63 100.00 100.00 100.00 100.00 100.00 98.82 100.00 100.00 100.00 100.00 99.32 100.00 100.00 99.24 100.00 100.00 100.00 98.36 98.68 99.08 96.00 99.32 100.00 100.00 100.00 100.00 100.00 97.67 99.43 96.77 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 K intron_retention CG6995 chr3R + chr3R_20647448_20647515 chr3R_20647447_20647448;chr3R_20647515_20647516 chr3R_20647431_20647447;chr3R_20647516_20647530 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 1.22 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention scaf6,EI_chr3L_17037760_17037808 chr3L - chr3L_17030356_17030419 chr3L_17030355_17030356;chr3L_17030419_17030420 chr3L_17030184_17030355;chr3L_17030420_17030734 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 1.59 0.00 0.00 5.71 2.56 0.00 1.27 0.00 0.00 2.27 2.82 2.04 0.00 3.12 0.00 0.00 0.00 1.48 2.63 1.22 0.00 0.00 1.10 1.90 1.79 0.78 0.00 2.78 0.00 3.12 0.00 0.00 0.00 0.00 0.00 2.03 K jcn_only_AA Crk,RI_chr4_231302_233315,I_chr4_231307_232253 chr4 + chr4_231113_231207 chr4_231113_231183 chr4_231064_231112;chr4_231208_231293 99.59 100.00 100.00 94.25 100.00 100.00 99.04 100.00 99.18 NA 100.00 97.59 97.73 100.00 94.87 96.47 97.73 97.44 100.00 98.86 93.33 100.00 97.73 97.06 100.00 100.00 98.28 NA NA 95.24 100.00 100.00 NA 100.00 100.00 100.00 96.15 100.00 97.22 97.73 NA 98.96 100.00 98.33 100.00 100.00 100.00 100.00 99.17 100.00 98.18 100.00 94.59 94.59 96.08 97.87 100.00 100.00 K intron_retention RI_chr2R_11577574_11577625,CG33460,CG33461,CG33462 chr2R + chr2R_11581923_11581981 chr2R_11581922_11581923;chr2R_11581981_11581982 chr2R_11581880_11581922;chr2R_11581982_11582133 0.00 0.00 0.00 0.60 0.60 0.00 0.00 0.39 0.76 0.00 0.00 0.57 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 2.54 0.00 0.00 0.00 0.00 0.00 0.00 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.95 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 1.48 K intron_retention prominin-like,I_chr3L_3116032_3116690,I_chr3L_3121200_3123087 chr3L - chr3L_3116032_3117082 chr3L_3116031_3116032;chr3L_3117082_3117083 chr3L_3115932_3116031;chr3L_3117083_3117256 0.19 0.33 0.25 0.36 0.85 0.20 0.26 0.36 0.53 0.00 0.61 0.34 0.00 0.27 0.38 0.00 0.26 0.00 0.26 0.33 0.00 0.28 0.14 0.00 0.37 0.26 0.53 0.67 0.42 0.00 0.00 0.23 0.15 0.98 0.00 0.00 0.00 0.00 0.19 0.07 0.09 0.20 0.00 0.17 0.15 0.18 0.00 0.40 0.24 0.58 0.00 0.00 0.16 0.00 0.36 0.00 0.00 0.00 K intron_retention l(3)82Fd,I_chr3R_1125296_1161435,I_chr3R_1125296_1175189,I_chr3R_1129905_1148709,I_chr3R_1129905_1160126,I_chr3R_1131576_1133656,I_chr3R_1131693_1133665,EI_chr3R_1136699_1138710,I_chr3R_1140028_1160126,I_chr3R_1147660_1148709 chr3R - chr3R_1129905_1138710 chr3R_1129904_1129905;chr3R_1138710_1138711 chr3R_1129833_1129904;chr3R_1138711_1138751 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG18522,CG18519 chr3R - chr3R_11358230_11358289 chr3R_11358229_11358230;chr3R_11358289_11358290 chr3R_11357732_11358229;chr3R_11358290_11358910 0.00 0.00 0.00 0.00 0.00 1.85 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.56 0.00 0.00 4.14 2.06 1.82 0.71 0.00 0.00 0.00 0.00 0.00 0.85 0.73 0.00 0.00 1.51 1.14 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.43 0.00 2.67 0.00 0.00 0.00 2.17 1.55 0.00 K jcn_only_AD pr-set7 chr3R + chr3R_10142132_10142198;chr3R_10142094_10142198 chr3R_10142103_10142198 chr3R_10142199_10142589;chr3R_10142068_10142093 79.17 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 79.17 NA NA NA NA NA NA NA NA NA NA K intron_retention Ptp61F,RI_chr3L_1345162_1345493 chr3L - chr3L_1346206_1346276 chr3L_1346205_1346206;chr3L_1346276_1346277 chr3L_1345943_1346205;chr3L_1346277_1346450 0.00 0.00 0.00 0.00 0.00 1.12 0.78 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 K intron_retention CG17273,I_chr3R_16652066_16655997,REI_chr3R_16652421_16653701,I_chr3R_16653805_16654088 chr3R - chr3R_16652066_16653701 chr3R_16652065_16652066;chr3R_16653701_16653702 chr3R_16651966_16652065;chr3R_16653702_16653801 0.20 0.00 0.24 0.83 0.67 0.00 0.20 0.37 0.31 0.00 0.00 0.16 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.70 0.00 0.27 0.81 0.27 0.44 0.89 0.41 0.00 0.00 0.28 0.58 0.40 0.21 0.18 0.21 0.00 0.34 0.25 0.38 0.14 0.00 0.28 0.00 0.00 0.00 0.52 0.33 0.00 0.28 0.00 0.00 0.00 0.23 0.00 0.00 0.20 K intron_retention I_chr3L_2589746_2592161,CG16986 chr3L + chr3L_2600446_2600821 chr3L_2600445_2600446;chr3L_2600821_2600822 chr3L_2600434_2600445;chr3L_2600822_2600959 0.00 NA NA 23.81 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 9.09 NA NA NA 13.64 NA 0.00 11.11 NA NA NA NA 7.14 8.00 0.00 0.00 0.00 6.45 0.00 NA NA 0.00 NA NA 0.00 0.00 10.53 NA 0.00 0.00 8.33 NA 0.00 0.00 NA NA NA NA NA NA NA 0.00 0.00 K alternative_acceptor Bub3,I_chr3R_25500779_25500838 chr3R - chr3R_25500779_25500838 chr3R_25500786_25500838 chr3R_25500839_25500938;chr3R_25500679_25500778 100.00 100.00 98.82 99.20 100.00 100.00 100.00 100.00 100.00 98.61 100.00 100.00 98.78 100.00 100.00 100.00 100.00 100.00 100.00 99.56 100.00 100.00 99.28 100.00 98.48 100.00 100.00 99.04 99.03 100.00 97.06 100.00 99.24 99.05 100.00 100.00 99.51 100.00 99.38 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.03 100.00 100.00 100.00 100.00 99.19 K jcn_only_AA CG3760,CG3770,CG12851 chr2R + chr2R_20826366_20826496 chr2R_20826366_20826478 chr2R_20826283_20826365;chr2R_20826497_20826740 28.16 23.04 26.73 48.73 25.00 26.87 43.75 15.76 28.83 33.58 35.12 29.21 37.40 26.44 17.06 31.08 32.37 24.59 33.12 20.70 36.99 28.47 27.45 27.43 33.73 33.78 20.11 25.00 34.66 28.16 22.49 31.12 35.15 26.91 30.06 69.18 22.73 26.92 31.17 29.08 41.11 29.77 25.56 12.37 33.61 27.17 24.86 32.59 35.17 23.55 29.89 22.94 24.02 20.83 29.33 23.08 24.90 27.03 K jcn_only_AD Art3,I_chr3R_11054902_11054955 chr3R - chr3R_11054902_11054972;chr3R_11054902_11054965 chr3R_11054902_11054955 chr3R_11054802_11054901;chr3R_11054973_11055055 2.38 3.92 0.00 2.38 0.00 2.86 0.00 0.00 3.12 0.00 0.00 1.49 NA 3.12 2.50 0.00 NA 2.38 2.86 0.00 2.86 0.00 3.66 1.41 0.00 NA 0.00 0.00 5.56 0.00 6.67 4.00 3.57 1.82 5.26 3.85 1.61 2.86 4.55 2.60 NA 5.00 4.17 0.00 0.00 6.78 1.72 3.70 1.56 3.45 1.20 4.55 3.00 1.79 2.78 5.48 0.85 2.33 K intron_retention Aats-ile chr3L + chr3L_22281841_22281894 chr3L_22281840_22281841;chr3L_22281894_22281895 chr3L_22281691_22281840;chr3L_22281895_22282039 44.44 30.77 41.38 51.95 38.46 51.28 47.96 49.33 36.88 47.22 36.21 50.00 40.43 55.88 48.28 44.93 46.94 43.48 41.18 42.15 47.62 24.44 42.86 36.21 60.87 84.62 36.17 25.97 74.29 44.00 35.29 61.90 66.13 46.48 39.29 48.84 32.35 21.95 42.50 46.81 73.08 50.00 50.00 31.67 44.44 72.00 48.48 78.12 48.08 25.93 27.78 36.54 55.00 32.00 36.36 40.74 23.53 57.14 K jcn_only_AA CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806425_22807258;chr3R_22806425_22807235;chr3R_22806425_22809684 chr3R_22806425_22807254 chr3R_22806325_22806424 58.85 57.89 59.26 59.45 57.30 59.92 71.60 60.34 53.88 54.17 58.13 59.61 57.14 63.70 65.13 64.88 57.61 53.72 63.32 58.52 62.57 54.55 60.90 54.17 59.30 59.18 59.62 NA 56.52 38.75 60.44 54.17 44.53 65.64 60.61 35.11 50.98 65.00 43.42 55.38 52.17 66.61 62.64 60.53 59.68 46.83 48.70 50.00 59.45 48.33 55.61 60.98 61.86 51.85 64.43 52.21 55.14 65.22 K jcn_only_AD CG1951 chr3R + chr3R_24853173_24853258 chr3R_24853192_24853258 chr3R_24853259_24853858;chr3R_24852969_24853172 100.00 100.00 100.00 98.21 100.00 100.00 100.00 99.03 100.00 100.00 98.31 100.00 100.00 100.00 98.89 100.00 100.00 100.00 100.00 99.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.14 99.00 100.00 100.00 97.81 100.00 98.81 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.94 100.00 98.73 100.00 98.12 98.04 98.11 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 K alternative_acceptor Qm,RI_chr3L_23087947_23088093,I_chr3L_23088406_23088824 chr3L - chr3L_23088312_23088374 chr3L_23088336_23088374 chr3L_23088375_23088402;chr3L_23088306_23088311 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD MAPk-Ak2,RI_chrX_5655618_5656137,I_chrX_5656715_5657974 chrX - chrX_5655618_5656137 chrX_5655618_5656133 chrX_5655518_5655617;chrX_5656138_5656237 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.48 99.61 99.75 99.49 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.67 100.00 99.68 100.00 100.00 99.67 99.51 100.00 100.00 100.00 100.00 99.63 100.00 100.00 99.46 99.79 99.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.44 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention REI_chr3R_10392729_10393060,I_chr3R_10394322_10394381,Cys,RI_chr3R_10400799_10401492 chr3R - chr3R_10395088_10395145 chr3R_10395087_10395088;chr3R_10395145_10395146 chr3R_10394796_10395087;chr3R_10395146_10395363 0.68 0.54 0.69 0.97 0.63 0.68 1.20 1.12 0.99 0.27 0.68 0.39 0.33 0.00 1.15 0.65 1.06 1.59 0.29 0.68 0.68 1.71 0.88 0.57 0.31 0.95 0.96 0.00 0.74 0.00 0.78 0.24 0.98 1.23 0.73 2.14 0.87 0.33 0.59 0.60 0.16 0.58 0.87 0.00 0.55 0.27 0.54 0.00 0.98 0.87 0.44 1.00 0.75 0.23 0.72 0.58 0.81 0.75 K cassette DCAP,RI_chr2R_6183553_6192101,I_chr2R_6188094_6192101 chr2R + chr2R_6181439_6182116 chr2R_6181439_6181654;chr2R_6181688_6182116 chr2R_6181655_6181687 chr2R_6181366_6181438;chr2R_6182117_6182270 87.50 90.91 87.50 NA 88.89 85.71 100.00 86.67 76.00 NA NA 90.91 85.71 88.89 66.67 91.67 88.89 87.50 21.43 96.00 NA NA 88.89 83.33 NA NA 85.71 NA 62.50 87.50 87.50 NA 80.00 87.50 NA NA 100.00 66.67 81.25 47.06 NA 80.00 NA 75.00 100.00 75.00 NA 72.73 94.12 100.00 75.00 NA 88.89 100.00 92.31 88.89 90.00 91.67 K intron_retention RpL3,I_chr3R_7047694_7047896,I_chr3R_7047774_7047896,E_chr3R_7047964_7050565,I_chr3R_7049970_7050189 chr3R + chr3R_7047655_7047896 chr3R_7047654_7047655;chr3R_7047896_7047897 chr3R_7047619_7047654;chr3R_7047897_7047963 0.04 0.00 0.06 0.06 0.00 0.04 0.08 0.04 0.00 0.00 0.00 0.08 0.00 0.00 0.05 0.09 0.04 0.00 0.00 0.00 0.00 0.00 1.72 1.38 1.67 0.00 2.88 4.00 0.49 1.05 0.08 0.31 0.27 0.06 0.00 1.38 0.00 1.89 0.31 0.21 0.00 0.04 0.08 2.11 0.00 0.00 0.00 0.00 0.07 0.00 1.89 0.91 0.23 0.00 0.00 0.00 0.00 0.07 K jcn_only_AD CoRest,I_chrX_19416977_19417035 chrX + chrX_19416603_19417035;chrX_19416977_19417035;chrX_19416431_19417035;chrX_19416669_19417035 chrX_19416423_19417035 chrX_19417036_19417135;chrX_19416201_19416422 43.97 43.97 33.33 48.19 41.54 51.79 46.67 41.76 38.30 33.78 38.71 47.01 52.54 50.00 50.68 47.95 42.86 50.77 50.00 47.92 47.06 38.79 49.35 46.21 54.79 47.62 40.00 44.00 39.25 37.25 40.00 45.57 33.33 48.45 42.20 44.00 41.23 50.96 43.48 42.42 38.00 46.00 39.22 50.00 47.06 43.48 45.54 38.84 40.60 40.00 55.19 47.44 32.47 47.73 40.48 34.38 29.55 37.21 K cassette Aldolase,I_chr3R_22083764_22086684 chr3R - chr3R_22082030_22082654 chr3R_22082030_22082195;chr3R_22082346_22082654 chr3R_22082196_22082345 chr3R_22081992_22082029;chr3R_22082655_22082854 8.49 5.73 8.49 17.50 8.06 11.76 9.56 17.17 11.17 19.42 5.00 8.55 15.12 10.91 11.43 9.92 7.41 23.08 6.17 10.26 8.86 20.31 7.87 8.52 8.57 10.00 8.00 14.47 8.63 7.10 17.65 6.77 6.90 12.80 8.55 6.03 6.17 5.30 4.95 6.22 8.51 12.29 12.50 8.13 3.73 6.80 6.67 10.66 8.15 5.86 6.14 8.42 2.50 4.35 9.09 6.83 3.53 6.31 K jcn_only_AA CG32436 chr3L + chr3L_21343362_21343438 chr3L_21343362_21343419 chr3L_21343187_21343361;chr3L_21343439_21343562 4.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 8.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention eater chr3R - chr3R_22921892_22921951 chr3R_22921891_22921892;chr3R_22921951_22921952 chr3R_22921757_22921891;chr3R_22921952_22922536 100.00 100.00 100.00 99.48 100.00 100.00 99.42 100.00 99.68 100.00 100.00 99.40 100.00 100.00 99.13 100.00 99.16 100.00 100.00 100.00 100.00 100.00 100.00 98.84 100.00 100.00 100.00 100.00 100.00 98.57 99.07 100.00 99.22 100.00 100.00 100.00 98.55 100.00 100.00 100.00 100.00 99.62 99.09 100.00 100.00 100.00 99.11 100.00 99.61 99.30 99.10 98.31 100.00 100.00 100.00 100.00 99.72 99.73 K alternative_donor Pegarn chr3L + chr3L_12784392_12784534;chr3L_12784406_12784534 chr3L_12784435_12784534 chr3L_12784535_12784733;chr3L_12784381_12784391 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 K jcn_only_AA Rab1,I_chr3R_17093463_17094644,I_chr3R_17094214_17094492,I_chr3R_17099005_17099062 chr3R - chr3R_17093463_17094492 chr3R_17094214_17094492 chr3R_17094493_17094592;chr3R_17093363_17093462 0.85 0.35 0.54 0.00 0.29 1.25 1.82 0.69 1.08 1.65 0.62 2.07 0.64 0.79 0.73 1.21 0.63 0.33 0.57 1.53 2.13 3.05 0.84 0.83 0.61 1.23 1.13 0.00 0.59 1.65 1.56 2.29 1.10 0.28 1.14 0.00 1.27 1.21 0.00 0.51 0.88 1.26 1.50 0.69 0.00 2.07 0.85 1.96 1.80 0.00 1.58 2.22 0.85 2.19 0.79 0.86 0.35 0.80 K jcn_only_AA SdhA,I_chr2R_15283283_15283411,I_chr2R_15283319_15283369 chr2R - chr2R_15283283_15283369 chr2R_15283319_15283369 chr2R_15283370_15283469;chr2R_15283219_15283282 2.22 1.69 4.35 1.27 4.26 0.00 2.17 0.00 3.33 NA 5.88 5.41 3.45 2.94 2.08 2.00 4.00 0.00 1.92 3.17 6.90 NA 9.09 NA NA 8.00 2.22 0.00 NA 0.00 5.13 NA 6.67 6.82 0.00 NA 6.06 4.00 0.00 7.69 NA 1.39 2.44 1.92 0.00 8.70 0.00 0.00 2.90 0.00 0.00 8.33 4.35 0.00 3.45 0.00 0.00 0.00 K alternative_acceptor Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911865_5913354;chr2R_5911803_5913354;chr2R_5911708_5913354 chr2R_5911755_5913354 chr2R_5913355_5913433;chr2R_5911703_5911707 3.33 NA 5.56 0.00 0.00 0.00 0.00 6.90 2.56 10.00 0.00 5.26 0.00 16.67 6.67 4.17 0.00 10.00 0.00 12.00 0.00 0.00 0.00 0.00 0.00 14.29 12.50 NA NA 0.00 5.26 NA 0.00 9.68 10.00 0.00 0.00 NA 0.00 10.53 NA 3.33 18.18 9.09 NA 0.00 NA 6.67 3.33 NA 0.00 14.29 NA NA 4.55 12.50 0.00 NA K cassette Stat92E,I_chr3R_16367780_16376442,I_chr3R_16367780_16377802,I_chr3R_16367815_16368548,att-ORFB chr3R - chr3R_16367276_16377802;chr3R_16367276_16376442 chr3R_16367276_16367401;chr3R_16367815_16376442,chr3R_16367815_16377802 chr3R_16367402_16367814 chr3R_16366245_16367275;chr3R_16377803_16377902 46.15 52.17 43.56 25.45 43.54 41.10 27.57 45.52 54.92 55.93 47.90 41.99 51.35 48.15 49.21 40.40 41.72 74.88 50.00 35.66 39.86 76.83 43.12 43.93 42.34 57.76 46.15 71.43 40.54 47.65 41.80 47.06 48.24 45.55 60.63 35.66 48.90 47.75 50.47 47.87 38.67 46.59 46.84 63.28 54.69 40.00 48.39 35.24 39.50 38.60 39.91 47.33 43.12 52.11 53.27 45.88 35.71 34.78 K alternative_acceptor Rga,I_chr3R_1436346_1437897,I_chr3R_1437726_1437791,Spec2 chr3R - chr3R_1436346_1437791 chr3R_1437726_1437791 chr3R_1437792_1437801;chr3R_1436246_1436345 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.99 0.00 2.38 0.88 0.00 0.00 0.00 1.11 0.00 2.50 0.00 1.19 1.92 0.00 0.00 0.00 0.00 0.00 1.47 2.17 0.91 0.00 0.00 0.00 0.00 1.22 2.38 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Ranbp16,I_chrX_15826485_15826554,I_chrX_15826655_15827277 chrX - chrX_15826485_15826554 chrX_15826495_15826554 chrX_15826555_15826588;chrX_15826385_15826484 100.00 96.67 100.00 98.59 100.00 100.00 96.83 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 98.77 100.00 100.00 97.92 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 NA 97.30 100.00 98.33 NA 98.18 99.06 100.00 100.00 100.00 100.00 97.14 98.00 100.00 97.26 96.30 100.00 NA NA NA 96.55 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 K intron_retention CG4630,RI_chr2R_9103472_9103634,I_chr2R_9103765_9103852,I_chr2R_9103956_9104108,RI_chr2R_9104206_9104265,CG4646 chr2R - chr2R_9107390_9107448 chr2R_9107389_9107390;chr2R_9107448_9107449 chr2R_9106943_9107389;chr2R_9107449_9107730 1.89 1.15 1.41 5.19 0.00 0.00 2.20 2.44 2.45 7.32 1.32 2.27 0.00 0.00 0.00 1.35 1.89 1.67 1.89 2.89 0.00 9.30 0.00 0.00 5.36 3.51 2.11 10.53 9.76 0.00 4.69 1.15 3.85 1.03 3.12 3.75 2.61 3.77 2.23 3.23 10.87 0.64 0.00 0.00 2.34 0.74 1.94 1.18 1.75 2.35 2.22 0.00 3.60 1.03 1.32 0.00 1.62 0.00 K cassette CG9331,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20824494_20825658;chr2L_20824494_20825667 chr2L_20824494_20825470;chr2L_20825513_20825658,chr2L_20825513_20825667 chr2L_20825471_20825512 chr2L_20824482_20824493;chr2L_20825668_20825758 17.51 31.25 7.34 5.26 6.06 7.81 10.71 3.57 9.93 31.25 30.00 6.72 2.94 6.98 5.04 7.64 8.24 10.14 4.72 4.66 12.50 30.77 50.00 61.11 NA 6.78 56.25 58.82 30.43 42.31 6.02 16.28 17.28 7.59 32.00 35.71 36.36 70.00 44.44 41.51 21.21 6.12 6.59 31.03 9.17 39.13 40.00 17.74 5.59 61.54 43.75 57.14 35.00 61.11 5.38 37.84 37.50 10.38 K alternative_acceptor CG9948 chr3L + chr3L_6949263_6949314;chr3L_6949263_6949310 chr3L_6949263_6949332 chr3L_6949194_6949262;chr3L_6949333_6949497 7.14 7.69 7.69 2.63 7.69 5.26 8.82 4.17 7.69 NA 6.25 3.23 5.88 0.00 4.00 3.03 6.25 5.88 10.34 10.26 6.67 5.26 NA 11.76 8.33 4.55 NA NA NA 0.00 4.55 NA NA 11.11 7.14 10.00 16.67 9.09 NA 4.00 9.09 9.52 7.14 12.50 6.67 4.17 5.88 11.76 2.27 5.26 12.50 12.50 9.52 8.33 4.00 4.35 7.14 13.33 K jcn_only_AA Ide,I_chr3L_20366301_20366354,I_chr3L_20368434_20368519,I_chr3L_20368443_20368519 chr3L - chr3L_20368434_20368519;chr3L_20368443_20368519 chr3L_20368462_20368519 chr3L_20368520_20368619;chr3L_20368343_20368433 97.87 98.51 100.00 98.41 100.00 95.56 97.73 98.92 99.26 93.94 98.00 95.15 100.00 91.30 98.28 100.00 97.83 100.00 96.43 98.31 95.65 97.10 90.48 98.68 90.24 100.00 100.00 94.12 95.45 100.00 91.21 100.00 95.00 98.68 100.00 97.87 96.19 98.21 100.00 99.02 94.29 96.33 100.00 96.23 100.00 100.00 97.87 99.29 97.14 94.34 96.47 95.65 100.00 96.88 97.26 94.34 97.56 100.00 K intron_retention Ac3,I_chr2L_21635211_21637957,I_chr2L_21643253_21646594 chr2L + chr2L_21639504_21639641 chr2L_21639503_21639504;chr2L_21639641_21639642 chr2L_21639280_21639503;chr2L_21639642_21639894 21.24 14.29 30.77 18.18 NA NA 21.43 30.00 19.23 NA NA 23.53 NA 14.29 NA 31.25 NA NA NA 9.68 NA NA NA NA NA NA 22.22 NA NA NA 13.79 33.33 26.32 16.67 NA 37.50 10.53 NA NA 17.65 30.77 15.38 16.67 NA NA 25.00 NA 21.74 21.05 NA NA NA NA NA 20.00 NA NA 35.29 K intron_retention CG17294,Rcd4 chr2L + chr2L_8377794_8377846 chr2L_8377793_8377794;chr2L_8377846_8377847 chr2L_8377624_8377793;chr2L_8377847_8378115 0.00 0.00 0.00 13.79 0.00 0.00 0.00 4.08 2.50 0.00 0.00 5.08 NA 5.00 0.00 0.00 0.00 0.00 0.00 3.85 3.85 0.00 5.77 0.00 4.35 6.67 3.51 10.34 5.00 0.00 2.50 0.00 8.00 0.00 0.00 11.76 0.00 0.00 0.00 3.57 6.25 7.27 0.00 0.00 0.00 1.69 0.00 4.65 0.00 3.85 5.66 0.00 3.45 3.57 0.00 3.33 3.12 0.00 K intron_retention Itp-r83A chr3R + chr3R_1357066_1357381 chr3R_1357065_1357066;chr3R_1357381_1357382 chr3R_1357041_1357065;chr3R_1357382_1358028 0.00 0.00 0.00 0.00 0.00 NA 7.41 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 3.70 0.00 NA NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K alternative_acceptor CG1161,RI_chr3R_1181273_1181459 chr3R + chr3R_1181273_1181515;chr3R_1181273_1181459 chr3R_1181273_1181555 chr3R_1181173_1181272;chr3R_1181556_1181559 98.97 99.15 99.37 98.60 100.00 100.00 94.78 99.55 98.89 96.77 100.00 99.29 98.46 98.26 99.46 99.26 100.00 100.00 98.39 98.80 98.81 97.10 99.13 98.99 97.73 95.92 98.94 98.73 96.19 98.43 99.20 100.00 100.00 98.39 99.09 96.75 99.01 99.46 98.93 97.79 98.25 99.32 98.77 98.29 96.97 98.29 99.55 100.00 99.60 98.50 98.97 99.13 100.00 100.00 98.95 98.97 100.00 98.00 K jcn_only_AD Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3295176;chr2R_3294566_3295244;chr2R_3294566_3294634;chr2R_3294566_3294636;chr2R_3294566_3295280;chr2R_3294566_3294642;chr2R_3294566_3294714 chr2R_3294566_3294638 chr2R_3294491_3294565;chr2R_3295281_3295302 4.52 12.50 3.12 7.69 NA 0.00 5.71 2.94 8.54 NA 9.09 1.85 8.00 9.52 2.56 0.00 4.76 0.00 0.00 2.99 10.00 4.00 7.50 6.45 6.25 0.00 4.35 3.23 9.38 12.50 2.86 6.67 6.06 2.50 NA NA 2.33 0.00 0.00 3.64 11.54 9.43 4.55 0.00 7.50 7.14 0.00 4.76 4.48 4.55 14.81 7.14 0.00 NA 3.33 12.50 4.35 1.79 K jcn_only_AD arm,I_chrX_1790787_1794076,I_chrX_1793073_1793336,I_chrX_1793073_1793350,I_chrX_1793073_1793389,I_chrX_1793073_1793734,I_chrX_1793073_1794406,RI_chrX_1795648_1795745,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1793073_1793794;chrX_1793073_1793431 chrX_1793073_1793413 chrX_1793013_1793072;chrX_1793795_1793834 81.98 NA 86.21 84.00 NA NA 90.48 92.59 81.48 NA NA 75.00 NA 72.73 81.82 94.74 90.00 NA 85.19 77.78 NA NA 64.52 NA NA NA NA NA NA NA 70.59 NA NA 79.63 77.50 NA NA NA NA 80.49 NA 78.79 NA 82.14 NA 90.24 NA 90.62 86.84 NA NA NA NA NA 77.14 NA NA 94.44 K alternative_donor Csp,RI_chr3L_22262215_22262452,I_chr3L_22264863_22266536,I_chr3L_22273037_22275661 chr3L + chr3L_22260888_22262452 chr3L_22262215_22262452 chr3L_22262453_22262552;chr3L_22260788_22260887 1.23 1.19 1.06 0.70 1.28 1.32 1.28 0.62 0.90 0.00 1.32 2.34 1.27 1.27 1.04 0.94 1.15 0.98 1.12 1.02 1.11 1.75 0.69 0.89 2.86 2.35 3.03 3.90 1.28 0.00 1.14 1.92 1.04 1.32 1.47 1.19 0.93 0.94 1.74 0.85 2.50 1.50 1.43 0.98 1.89 1.30 1.10 1.54 1.10 1.54 1.52 1.56 0.00 1.54 0.87 1.27 0.00 1.23 K intron_retention Hop chr2L + chr2L_295629_295703 chr2L_295628_295629;chr2L_295703_295704 chr2L_295346_295628;chr2L_295704_296811 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 1.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor mura,I_chr3R_5373093_5375309,I_chr3R_5373093_5375380,I_chr3R_5373093_5376618,RI_chr3R_5373093_5377292,CR42549,noncoding_15610,I_chr3R_5375533_5376618,RI_chr3R_5380786_5380850 chr3R - chr3R_5373093_5375499 chr3R_5373093_5375013 chr3R_5373086_5373092;chr3R_5375500_5375532 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 97.73 99.09 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG9510 chr2L - chr2L_8942656_8942826 chr2L_8942655_8942656;chr2L_8942826_8942827 chr2L_8942509_8942655;chr2L_8942827_8943071 0.00 0.00 4.35 8.00 0.00 NA 5.00 5.26 4.44 NA 8.33 5.08 0.00 0.00 0.00 0.00 0.00 0.00 7.41 3.70 0.00 NA 0.00 5.00 0.00 0.00 8.70 NA NA 0.00 7.69 0.00 0.00 2.38 5.26 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 3.23 0.00 4.55 2.27 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG2083,I_chr3L_2796679_2820058,noncoding_10229,I_chr3L_2821347_2851558,RI_chr3L_2833393_2851558,CG14952,CG9973 chr3L - chr3L_2796679_2851558 chr3L_2796682_2851558 chr3L_2851559_2851658;chr3L_2796628_2796678 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention lark,noncoding_11093,REI_chr3L_7332718_7333975,RI_chr3L_7334219_7334452 chr3L + chr3L_7332718_7333975 chr3L_7332717_7332718;chr3L_7333975_7333976 chr3L_7332618_7332717;chr3L_7333976_7334075 33.33 NA NA NA NA NA NA 66.67 53.85 NA NA 53.33 NA NA NA NA NA NA NA 60.00 NA 31.82 17.39 36.36 NA NA 30.00 29.41 33.33 NA 33.33 17.65 21.74 NA 11.11 16.00 10.53 45.45 33.33 26.67 12.50 58.82 NA 33.33 38.10 35.00 22.22 30.30 58.82 NA 31.25 NA NA 20.00 NA 40.00 NA 42.86 K intron_retention I_chr2R_16518342_16520460,I_chr2R_16518620_16518916,RI_chr2R_16520388_16520855,rig chr2R - chr2R_16522403_16522461 chr2R_16522402_16522403;chr2R_16522461_16522462 chr2R_16522252_16522402;chr2R_16522462_16522622 0.00 0.00 0.00 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Cyp4d20 chr3L - chr3L_2477119_2477184 chr3L_2477118_2477119;chr3L_2477184_2477185 chr3L_2477112_2477118;chr3L_2477185_2477381 4.35 NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 11.11 NA NA NA NA NA NA NA 4.35 NA NA NA NA NA NA NA NA K intron_retention CG4133 chr2L + chr2L_456898_456972 chr2L_456897_456898;chr2L_456972_456973 chr2L_456797_456897;chr2L_456973_457338 88.89 85.19 89.29 88.89 84.62 82.76 90.24 91.30 90.24 87.50 100.00 87.84 95.24 95.45 88.57 95.24 95.83 87.10 90.91 89.47 95.45 94.12 87.14 88.71 96.00 96.15 92.45 89.19 95.00 85.00 80.95 90.62 89.58 92.16 96.88 96.55 87.23 87.80 83.75 92.13 87.88 85.37 80.00 80.00 73.68 85.19 78.18 91.67 85.51 87.32 85.00 90.62 80.43 89.36 96.77 79.66 84.78 82.86 K intron_retention sec31,F_chr2R_4781243_4781449,I_chr2R_4783150_4783708 chr2R + chr2R_4781243_4781430 chr2R_4781242_4781243;chr2R_4781430_4781431 chr2R_4781143_4781242;chr2R_4781431_4781646 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.46 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 2.50 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 3.33 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 1.98 0.00 0.00 0.00 K alternative_donor RpS25,I_chr3R_7041333_7041414,I_chr3R_7041347_7041413,I_chr3R_7041347_7041556,RI_chr3R_7044164_7044221 chr3R - chr3R_7041347_7041556;chr3R_7041347_7041471 chr3R_7041347_7041414 chr3R_7041267_7041346;chr3R_7041557_7041598 99.90 99.89 99.81 99.82 99.91 99.92 99.93 99.86 99.90 99.90 99.90 99.83 99.91 99.85 99.93 99.83 99.90 99.96 99.89 99.87 99.93 98.06 99.87 99.92 99.97 99.76 99.93 99.78 99.84 99.90 99.92 99.91 99.85 99.89 99.89 99.90 99.90 99.92 99.91 99.82 99.93 99.87 99.90 99.96 99.95 99.94 99.87 99.95 99.88 99.69 99.92 99.97 99.94 99.93 99.88 99.93 99.95 99.93 N jcn_only_AD I_chrX_4000307_4003527,CG4857 chrX + chrX_4011929_4011996;chrX_4011429_4011996;chrX_4011270_4011996 chrX_4011315_4011996 chrX_4011997_4012308;chrX_4011093_4011269 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.26 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10277,I_chr3R_2211939_2212057 chr3R + chr3R_2211254_2211312 chr3R_2211253_2211254;chr3R_2211312_2211313 chr3R_2211081_2211253;chr3R_2211313_2211404 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.31 0.38 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31637 chr2L + chr2L_6525551_6525618 chr2L_6525550_6525551;chr2L_6525618_6525619 chr2L_6525368_6525550;chr2L_6525619_6525820 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.70 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Vha13,I_chr3R_15469561_15469787,I_chr3R_15469691_15469927 chr3R - chr3R_15469561_15469927 chr3R_15469560_15469561;chr3R_15469927_15469928 chr3R_15469461_15469560;chr3R_15469928_15470027 0.50 0.37 0.60 0.00 1.06 0.56 0.96 0.72 0.34 0.67 0.48 0.48 0.61 0.00 0.55 0.67 0.00 0.00 0.00 0.54 0.00 0.51 0.61 0.44 0.87 0.00 0.76 1.17 0.64 1.07 0.57 0.87 0.46 0.69 0.27 1.26 0.47 0.38 0.27 0.41 1.51 0.43 0.43 0.00 0.84 0.76 0.39 0.62 0.50 0.66 0.68 0.35 0.30 0.33 0.00 0.30 0.22 0.62 K alternative_donor CG3328,I_chr2R_20051089_20053935 chr2R + chr2R_20050225_20053935 chr2R_20050243_20053935 chr2R_20053936_20054021;chr2R_20050034_20050224 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 6.25 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention CG13120 chr2L - chr2L_9765560_9765615 chr2L_9765559_9765560;chr2L_9765615_9765616 chr2L_9765357_9765559;chr2L_9765616_9765725 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K intron_retention Jafrac1,I_chrX_13223890_13225154,I_chrX_13224064_13225154,RI_chrX_13224713_13225154 chrX + chrX_13223998_13225154 chrX_13223997_13223998;chrX_13225154_13225155 chrX_13223964_13223997;chrX_13225155_13225254 0.73 0.83 1.00 1.42 0.47 0.55 0.65 1.01 0.56 0.83 2.66 0.57 0.46 0.84 0.94 0.75 0.60 1.13 0.86 0.45 1.09 1.67 0.51 1.19 1.92 0.88 2.88 2.81 1.19 0.83 0.50 0.17 0.66 0.72 0.71 0.94 0.72 0.37 0.95 0.71 0.70 0.79 0.64 0.73 0.50 0.41 0.49 0.95 0.76 0.85 0.95 0.56 0.40 0.44 1.14 0.67 0.68 0.41 K intron_retention RI_chrX_11473566_11473702,roX2,noncoding_23149,nod,I_chrX_11475074_11475402 chrX + chrX_11473727_11474962 chrX_11473726_11473727;chrX_11474962_11474963 chrX_11473707_11473726;chrX_11474963_11475073 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA K intron_retention CG14709,F_chr3R_7396835_7396923,F_chr3R_7405343_7405539 chr3R + chr3R_7397528_7397989 chr3R_7397527_7397528;chr3R_7397989_7397990 chr3R_7397347_7397527;chr3R_7397990_7399584 0.00 0.00 0.48 1.49 0.00 0.00 0.58 0.76 0.52 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.54 0.00 0.50 0.00 0.00 0.00 0.84 0.00 0.00 0.00 0.00 2.03 0.33 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.54 0.00 3.23 0.00 K intron_retention ns3,CG32808 chrX - chrX_1356490_1356556 chrX_1356489_1356490;chrX_1356556_1356557 chrX_1356406_1356489;chrX_1356557_1356611 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 98.04 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.80 98.85 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.46 100.00 100.00 100.00 99.33 K intron_retention RpL18 chr3L - chr3L_7234042_7234325 chr3L_7234041_7234042;chr3L_7234325_7234326 chr3L_7233955_7234041;chr3L_7234326_7234355 0.41 0.51 0.26 0.15 0.00 0.45 0.22 0.31 0.27 0.26 0.20 0.25 0.29 0.06 0.37 0.40 0.21 0.34 0.27 0.33 0.29 1.33 0.78 0.18 0.58 0.31 2.26 5.58 1.17 0.66 0.95 0.41 0.51 0.23 2.13 3.68 0.22 0.31 0.54 0.67 0.85 0.22 0.33 1.29 0.30 1.39 0.42 0.88 0.68 0.75 1.06 0.44 1.62 6.42 0.33 0.69 0.28 0.84 K intron_retention CG7207 chr3L - chr3L_8276715_8276872 chr3L_8276714_8276715;chr3L_8276872_8276873 chr3L_8276380_8276714;chr3L_8276873_8277104 0.00 0.00 0.00 0.70 0.00 0.00 1.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.49 0.00 0.62 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 K intron_retention CG13784,I_chr2L_7209439_7209522,I_chr2L_7219131_7219918 chr2L - chr2L_7209654_7218908 chr2L_7209653_7209654;chr2L_7218908_7218909 chr2L_7209523_7209653;chr2L_7218909_7219130 10.53 6.90 16.67 13.79 8.33 18.18 11.76 9.09 17.50 3.45 14.29 12.82 NA 17.65 10.53 22.22 21.05 10.53 22.22 20.59 10.00 12.50 15.38 13.51 5.00 4.35 14.04 14.29 6.25 9.80 22.22 0.00 6.78 15.15 16.67 2.56 0.00 15.15 6.35 8.20 6.90 11.54 13.04 4.84 0.00 6.90 8.70 15.69 12.20 NA 9.62 9.52 NA 9.09 17.24 0.00 NA 0.00 K intron_retention CG11412,Tsp2A chrX + chrX_1236563_1236619 chrX_1236562_1236563;chrX_1236619_1236620 chrX_1236171_1236562;chrX_1236620_1237247 93.22 95.00 86.36 82.61 94.44 93.33 95.65 87.50 97.87 88.89 83.33 97.14 94.12 87.50 95.65 95.24 88.24 94.44 87.50 93.18 89.47 91.18 96.77 83.33 92.86 95.65 96.15 95.24 92.86 96.15 96.30 96.77 91.67 96.30 95.45 100.00 87.50 86.67 95.24 89.36 93.33 92.73 84.21 100.00 80.00 97.30 95.00 92.31 90.70 86.96 91.67 93.75 95.00 90.48 82.14 95.45 91.67 93.22 K intron_retention CG1746,I_chr3R_27042457_27043461,RNaseP:RNA,RI_chr3R_27044771_27045268 chr3R - chr3R_27042900_27043461 chr3R_27042899_27042900;chr3R_27043461_27043462 chr3R_27042432_27042899;chr3R_27043462_27043561 0.48 0.41 0.41 0.42 0.61 0.38 0.55 0.49 0.42 0.41 0.38 0.51 0.63 0.82 0.39 0.50 0.35 0.59 0.35 0.38 0.58 2.16 0.43 0.37 0.66 0.57 1.35 3.97 0.95 0.40 0.82 0.52 0.39 0.38 0.43 0.80 0.34 0.32 0.33 0.81 0.57 0.46 0.56 0.55 0.41 0.54 0.41 1.09 0.72 0.35 0.65 0.55 0.48 0.29 0.52 0.29 0.22 0.36 K intron_retention CG9667 chr3R - chr3R_3951666_3951726 chr3R_3951665_3951666;chr3R_3951726_3951727 chr3R_3951009_3951665;chr3R_3951727_3951887 0.00 0.00 5.56 1.96 0.00 0.00 2.56 4.17 0.00 4.55 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 5.71 3.57 6.25 5.26 5.71 5.56 0.00 2.70 0.00 0.00 0.00 4.55 0.00 0.00 4.17 0.00 3.12 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 8.33 2.27 0.00 0.00 0.00 0.00 2.63 0.00 0.00 K intron_retention CG12877 chr3R + chr3R_23534052_23534213 chr3R_23534051_23534052;chr3R_23534213_23534214 chr3R_23533563_23534051;chr3R_23534214_23534520 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_acceptor CG13807 chr3L + chr3L_2263295_2263374 chr3L_2263295_2263355 chr3L_2262781_2263294;chr3L_2263375_2263666 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 68.42 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Lar,I_chr2L_19611627_19620060,I_chr2L_19644636_19644695,REI_chr2L_19702035_19702145 chr2L + chr2L_19611627_19644267 chr2L_19611627_19643330 chr2L_19611527_19611626 0.00 4.35 NA 6.25 NA 0.00 0.00 0.00 0.00 NA NA 3.85 5.00 NA 0.00 NA NA NA NA 0.00 NA NA 3.57 3.23 0.00 NA 0.00 NA NA 3.70 0.00 NA 0.00 0.00 NA 0.00 2.27 NA 0.00 2.38 NA 0.00 NA 2.63 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 3.57 NA NA NA K jcn_only_AD Hsc70-3,I_chrX_11699076_11699138,I_chrX_11699076_11699158,I_chrX_11699076_11699260,EI_chrX_11699076_11699573,I_chrX_11699076_11700062 chrX - chrX_11699076_11700276 chrX_11699076_11700110 chrX_11698976_11699075;chrX_11700277_11700394 0.39 0.00 0.00 0.00 0.00 0.00 0.40 0.60 0.28 1.30 1.01 0.23 0.00 0.39 0.00 0.00 0.00 0.48 0.00 0.00 0.60 0.45 0.49 0.98 0.00 1.32 0.00 0.39 1.62 0.81 0.84 0.00 0.72 0.47 1.80 1.70 2.08 0.00 0.00 0.51 1.43 0.93 0.00 0.00 0.00 0.00 0.93 0.79 0.80 0.40 0.00 0.00 0.68 0.00 0.00 0.00 0.00 1.42 K cassette Rab2,I_chr2R_2584435_2585553 chr2R + chr2R_2584435_2585553 chr2R_2584435_2584920;chr2R_2585081_2585553 chr2R_2584921_2585080 chr2R_2584335_2584434;chr2R_2585554_2585653 99.65 99.26 99.61 99.69 100.00 100.00 100.00 99.72 99.22 99.39 99.46 99.79 98.84 99.53 99.64 99.65 100.00 100.00 99.58 99.81 100.00 97.21 99.71 100.00 100.00 100.00 99.68 100.00 98.24 99.47 98.99 99.39 99.47 99.71 100.00 99.48 99.47 100.00 99.76 100.00 99.22 99.79 99.46 99.61 99.50 100.00 99.67 99.32 99.08 98.99 99.65 99.45 99.53 99.10 100.00 100.00 100.00 100.00 K intron_retention CG5073 chr3R + chr3R_11197940_11198116 chr3R_11197939_11197940;chr3R_11198116_11198117 chr3R_11197681_11197939;chr3R_11198117_11198294 2.37 3.40 2.52 5.33 2.27 1.61 2.73 1.22 3.31 0.00 0.00 2.20 1.98 3.41 3.03 4.49 2.56 3.64 3.16 3.27 1.90 14.67 2.21 1.25 1.56 4.72 2.37 2.53 4.31 3.57 3.12 0.00 2.22 5.10 1.89 3.52 1.50 1.62 1.87 1.96 6.74 1.28 2.50 1.91 1.79 1.25 3.53 6.10 2.11 3.80 3.09 1.72 1.52 1.32 3.01 0.00 1.62 3.30 K intron_retention I_chr3R_261173_261244,CG14650,RI_chr3R_265878_265942 chr3R + chr3R_266408_266468 chr3R_266407_266408;chr3R_266468_266469 chr3R_266115_266407;chr3R_266469_267041 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.80 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 K intron_retention Pvr,I_chr2L_8226604_8228082,I_chr2L_8229012_8229080,I_chr2L_8230332_8238998 chr2L - chr2L_8227151_8227651 chr2L_8227150_8227151;chr2L_8227651_8227652 chr2L_8227095_8227150;chr2L_8227652_8227658 57.14 66.67 52.94 100.00 45.45 66.67 66.67 69.57 64.86 50.00 NA 50.00 78.79 65.12 58.82 58.49 57.14 37.04 64.71 24.08 81.82 NA 52.00 50.00 54.84 60.00 76.47 NA 26.67 73.08 31.11 53.85 28.57 54.00 66.67 60.00 50.00 45.83 48.57 62.07 NA 56.92 72.22 53.85 NA 33.33 52.38 45.71 67.74 NA 60.00 60.00 26.32 61.54 61.54 38.89 72.73 36.36 K alternative_donor RI_chrX_2622435_2622577,CG2712,RI_chrX_2627170_2627263,RI_chrX_2627204_2627246 chrX + chrX_2627170_2627263 chrX_2627204_2627263 chrX_2627264_2627326;chrX_2627104_2627169 70.00 88.89 50.00 68.75 62.50 NA 87.50 66.67 76.47 NA NA 69.57 NA 70.00 73.33 87.50 NA NA 60.00 77.78 NA 81.82 71.43 77.78 100.00 87.50 69.23 NA 45.00 60.00 41.67 47.62 78.95 76.47 90.00 55.56 90.00 54.55 76.47 46.15 56.52 68.75 NA 75.00 57.14 58.62 77.78 54.55 58.82 76.47 76.47 66.67 80.00 57.14 NA 91.67 78.57 67.86 K intron_retention CG17698 chr3L + chr3L_23741817_23741871 chr3L_23741816_23741817;chr3L_23741871_23741872 chr3L_23741752_23741816;chr3L_23741872_23741939 0.00 0.00 0.00 10.17 0.00 0.00 4.76 5.63 0.00 NA 0.00 0.00 0.00 4.17 0.00 1.67 0.00 0.00 0.00 0.00 0.00 NA 2.70 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 3.12 0.00 0.00 0.00 NA 0.00 1.72 NA 1.61 0.00 0.00 0.00 5.88 0.00 NA 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG6656,RI_chr3R_17702199_17702274,CG33092 chr3R + chr3R_17702199_17702296 chr3R_17702199_17702274 chr3R_17702099_17702198;chr3R_17702297_17702306 3.75 4.17 0.00 5.00 NA 8.00 0.00 2.08 2.02 3.70 NA 4.55 NA 16.67 5.00 10.00 NA 0.00 4.35 2.86 NA 1.56 2.15 2.20 4.76 NA 5.36 6.82 NA 6.06 26.92 0.00 0.00 4.17 12.82 NA 2.42 NA 5.43 2.22 NA 0.00 NA 8.33 2.63 3.57 1.61 4.00 1.45 3.28 4.30 5.00 3.80 2.44 5.00 0.00 4.42 3.45 K cassette CG31313,REI_chr3R_10392729_10393060,I_chr3R_10394322_10394381,RI_chr3R_10400799_10401492 chr3R - chr3R_10392729_10393060 chr3R_10392729_10392875;chr3R_10393003_10393060 chr3R_10392876_10393002 chr3R_10392629_10392728;chr3R_10393061_10393148 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor CG6838,I_chr3L_22709306_22709668 chr3L - chr3L_22710181_22710325 chr3L_22710181_22710293 chr3L_22710071_22710180;chr3L_22710326_22710385 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 NA 100.00 100.00 NA NA 93.33 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 NA NA NA 100.00 100.00 100.00 88.89 100.00 NA 100.00 100.00 100.00 100.00 N intron_retention CG31342,I_chr3R_8813079_8814327,I_chr3R_8822346_8822403 chr3R + chr3R_8814211_8814327 chr3R_8814210_8814211;chr3R_8814327_8814328 chr3R_8813098_8814210;chr3R_8814328_8814427 57.14 NA NA NA NA NA 57.14 NA NA NA NA NA NA NA NA NA NA NA NA 29.41 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA MB8.chr3R.pasa.66,ref1,RI_chr3R_2904130_2904237,RI_chr3R_2904305_2904543,I_chr3R_2904452_2904543 chr3R - chr3R_2904305_2904543;chr3R_2904130_2904543 chr3R_2904452_2904543 chr3R_2904544_2904643;chr3R_2904030_2904129 0.24 0.00 0.00 0.52 0.00 0.66 0.57 0.56 0.29 0.00 0.72 0.00 0.00 0.81 0.46 0.00 0.72 0.00 1.71 0.47 0.61 1.84 0.00 0.00 0.41 0.00 0.57 0.81 0.00 1.25 0.00 0.00 0.70 0.50 0.52 0.39 0.21 0.00 0.24 0.00 0.77 0.00 0.00 0.00 0.28 0.00 0.32 0.00 0.00 0.00 0.00 0.59 0.44 0.31 0.00 0.30 0.00 0.00 K intron_retention CG14562 chr3L + chr3L_21937596_21937669 chr3L_21937595_21937596;chr3L_21937669_21937670 chr3L_21937217_21937595;chr3L_21937670_21939214 100.00 NA 92.86 95.45 100.00 100.00 100.00 95.24 96.55 NA 100.00 93.10 100.00 91.67 93.33 95.45 100.00 92.31 100.00 94.44 NA 100.00 100.00 90.91 NA 100.00 100.00 100.00 NA NA 85.71 NA 100.00 100.00 100.00 NA 93.75 88.89 100.00 100.00 NA 100.00 100.00 92.86 NA NA NA 87.50 95.83 NA 100.00 100.00 NA NA 100.00 NA NA NA K alternative_acceptor CG14299 chr3R - chr3R_14584412_14584462 chr3R_14584415_14584462 chr3R_14584463_14584568;chr3R_14583690_14584411 89.47 NA 90.91 88.24 88.89 NA 92.00 94.74 80.77 NA NA 96.30 73.68 91.67 80.00 72.41 77.78 87.50 92.31 84.85 85.71 92.86 90.91 87.50 87.50 76.92 94.12 100.00 90.48 80.00 85.00 NA 88.89 89.47 77.78 64.29 90.91 88.89 90.91 92.86 NA 95.45 80.00 95.45 NA 91.67 90.00 92.50 69.57 NA 93.75 NA NA NA 94.44 NA NA NA K jcn_only_AD CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4988849_4990307 chr2L_4989411_4990307 chr2L_4990308_4990450 93.13 91.49 95.00 100.00 91.67 93.18 94.92 97.06 93.13 55.74 97.06 92.17 89.66 97.87 94.37 94.67 96.43 96.00 91.30 94.78 95.16 93.33 88.73 76.47 89.36 90.00 84.38 80.49 72.45 90.57 97.83 85.71 90.91 96.40 87.50 97.22 88.24 90.00 85.33 87.80 95.16 94.07 95.65 83.33 83.33 96.08 84.21 95.65 97.96 78.05 94.74 93.10 93.55 95.83 94.64 94.12 91.84 91.67 K intron_retention CG11208 chr2R - chr2R_16130615_16130677 chr2R_16130614_16130615;chr2R_16130677_16130678 chr2R_16129969_16130614;chr2R_16130678_16131917 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 3.80 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Shawn_Tyler,CG14207,RI_chrX_19502515_19504413,CRE_chrX_19503018_19503085,CE_chrX_19503187_19504413 chrX + chrX_19499716_19504413 chrX_19499715_19499716;chrX_19504413_19504414 chrX_19499191_19499715;chrX_19504414_19504495 8.18 7.81 3.57 4.84 6.12 8.16 9.09 9.30 8.18 6.90 15.15 12.82 7.14 10.64 3.92 17.65 8.70 8.33 13.64 10.84 11.36 8.81 6.74 6.12 13.51 9.52 4.48 6.25 11.32 10.64 8.16 9.80 8.54 7.69 8.62 12.50 7.41 5.56 8.24 7.50 5.88 10.98 0.00 10.91 2.82 6.02 8.54 7.69 6.25 4.12 7.23 8.33 7.27 12.90 13.33 8.97 5.33 8.06 K jcn_only_AA CG1440 chrX + chrX_8331328_8333141 chrX_8331328_8332952 chrX_8331282_8331327;chrX_8333142_8333791 9.09 0.00 6.90 3.39 12.77 22.22 21.55 0.00 7.51 6.25 18.92 10.62 8.70 8.14 13.24 7.69 10.61 25.00 12.05 15.79 13.04 9.80 1.89 10.53 4.55 13.11 11.32 0.00 14.29 8.16 13.10 8.33 4.69 8.39 9.09 4.65 3.85 9.68 5.88 1.61 2.86 6.52 10.14 10.17 12.50 8.47 12.50 9.80 4.39 10.53 8.62 15.79 7.69 0.00 11.11 10.26 4.76 9.09 K cassette Chro,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22871119_22871733 chr3L_22871119_22871250;chr3L_22871351_22871733 chr3L_22871251_22871350 chr3L_22871037_22871118;chr3L_22871734_22871779 22.08 21.43 25.00 20.00 NA 16.67 12.50 16.67 30.00 NA NA 15.38 12.50 21.05 29.41 18.75 NA 18.18 27.78 17.65 44.44 NA 26.32 33.33 NA 13.33 NA NA NA 25.00 15.38 23.08 NA 22.73 NA 14.29 41.67 27.27 46.15 26.67 7.69 19.23 30.00 NA NA 15.00 NA 6.67 20.69 30.77 17.39 25.00 NA 25.00 22.73 26.67 NA NA K intron_retention CG1815,I_chr3R_27501104_27501167,I_chr3R_27501104_27501176 chr3R + chr3R_27501104_27501167 chr3R_27501103_27501104;chr3R_27501167_27501168 chr3R_27501004_27501103;chr3R_27501168_27501267 100.00 100.00 100.00 98.46 97.06 100.00 100.00 96.92 98.73 97.56 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 98.77 95.65 100.00 100.00 97.96 100.00 100.00 100.00 97.30 100.00 100.00 100.00 97.78 98.75 98.48 100.00 100.00 96.72 100.00 100.00 100.00 97.96 98.91 96.77 100.00 97.87 96.72 96.55 99.06 100.00 100.00 98.00 100.00 96.97 95.83 100.00 100.00 96.77 98.82 K jcn_only_AD CG8446 chr2R + chr2R_12084078_12084196 chr2R_12084108_12084196 chr2R_12084197_12084416;chr2R_12083895_12084077 55.00 48.54 63.51 45.08 59.09 67.61 59.80 55.36 68.09 50.00 61.90 64.29 59.42 62.32 70.30 53.57 60.66 58.14 72.31 56.13 55.00 62.07 46.11 41.67 35.79 62.67 51.32 38.96 66.67 51.11 74.60 54.17 40.21 65.00 48.57 45.68 50.00 48.57 53.28 28.00 58.21 63.33 66.18 48.91 55.32 47.73 44.62 64.71 74.40 53.03 50.00 59.68 45.08 45.04 64.52 53.09 48.13 49.54 K cassette LBR chr2R + chr2R_17608123_17608452 chr2R_17608123_17608191;chr2R_17608380_17608452 chr2R_17608192_17608379 chr2R_17608017_17608122;chr2R_17608453_17608832 16.67 15.38 25.00 15.00 NA 25.00 NA 30.77 21.05 22.22 NA 23.08 21.43 18.75 28.57 13.79 NA 29.41 20.00 18.75 NA 9.38 12.00 11.11 NA 17.65 6.25 5.88 27.27 0.00 8.33 16.67 NA 31.82 17.65 NA NA 6.25 12.50 8.47 NA 25.00 7.69 4.76 NA NA NA 20.00 24.00 6.25 11.11 NA 15.38 NA 16.67 5.26 NA 38.46 K jcn_only_AD CG1970,I_chr4_590803_590943,I_chr4_590970_591030 chr4 - chr4_590803_590943 chr4_590803_590859 chr4_590703_590802;chr4_590944_590969 99.37 100.00 98.96 97.33 100.00 98.46 100.00 100.00 99.12 99.17 98.59 98.38 99.33 100.00 99.52 98.49 98.68 98.93 98.84 98.51 100.00 100.00 99.57 99.64 99.14 100.00 98.85 100.00 100.00 98.84 100.00 100.00 97.12 99.59 100.00 97.96 99.36 99.55 98.54 100.00 98.11 99.15 100.00 100.00 99.37 99.05 99.56 100.00 98.97 98.77 99.20 100.00 99.48 99.36 99.59 99.47 100.00 99.35 K alternative_donor I_chr2R_9844856_9845327,CG13349,RI_chr2R_9846641_9846709 chr2R - chr2R_9847615_9847752;chr2R_9847615_9847732 chr2R_9847615_9847823 chr2R_9847073_9847614;chr2R_9847824_9847834 2.27 0.00 0.00 0.00 0.00 0.00 2.33 2.17 0.00 10.00 0.00 2.27 0.00 0.00 6.25 2.44 3.70 4.17 0.00 3.57 3.57 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30.00 3.85 11.11 9.09 2.27 0.00 7.14 0.00 5.00 0.00 25.00 11.11 7.14 3.85 9.09 5.26 11.54 0.00 12.50 1.92 0.00 0.00 6.67 6.25 5.56 3.33 0.00 0.00 38.89 K intron_retention hipk,RI_chr3L_548068_552227 chr3L + chr3L_571674_571741 chr3L_571673_571674;chr3L_571741_571742 chr3L_571080_571673;chr3L_571742_571971 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.29 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention tral,I_chr3L_12511355_12511540,I_chr3L_12512171_12512251 chr3L + chr3L_12511325_12511537 chr3L_12511324_12511325;chr3L_12511537_12511538 chr3L_12511255_12511324;chr3L_12511538_12511767 45.57 42.19 54.55 39.81 51.02 53.70 41.89 43.48 51.75 32.84 53.85 54.05 55.36 59.26 41.54 62.22 51.52 45.10 52.38 59.74 54.00 31.58 50.40 43.82 55.74 54.55 46.48 43.42 52.46 38.46 47.17 44.44 37.93 38.24 45.90 43.68 42.38 34.67 45.45 26.47 39.47 53.70 38.46 33.71 42.50 38.30 44.54 46.88 50.00 31.91 45.57 45.45 50.00 50.00 52.54 44.12 50.00 47.37 K intron_retention CG6912 chr3R - chr3R_10962115_10962193 chr3R_10962114_10962115;chr3R_10962193_10962194 chr3R_10962052_10962114;chr3R_10962194_10962253 1.21 1.27 0.00 1.15 0.00 1.82 0.00 4.67 0.68 0.00 0.00 0.00 1.44 2.90 0.00 0.81 1.39 0.00 2.44 0.72 0.00 1.97 0.00 0.00 0.00 3.85 1.75 0.00 0.00 4.76 2.82 0.00 0.00 2.44 4.35 5.26 4.65 0.00 0.00 0.00 5.13 1.49 0.00 2.15 4.35 0.00 3.03 2.88 0.00 NA 2.86 0.00 2.17 2.04 4.00 3.85 2.68 1.16 K intron_retention CG14476,I_chrX_21474758_21476200 chrX - chrX_21472302_21472370 chrX_21472301_21472302;chrX_21472370_21472371 chrX_21471630_21472301;chrX_21472371_21473856 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.81 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor lola,RI_chr2R_6378557_6378638,I_chr2R_6378557_6379404,I_chr2R_6421474_6423519,I_chr2R_6421904_6422354 chr2R - chr2R_6378557_6419543 chr2R_6378557_6378638 chr2R_6378517_6378556;chr2R_6419544_6419624 100.00 100.00 66.67 100.00 100.00 100.00 80.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 83.33 100.00 75.00 100.00 100.00 66.67 66.67 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 75.00 100.00 100.00 66.67 66.67 83.33 66.67 100.00 66.67 100.00 75.00 100.00 83.33 100.00 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 K intron_retention I_chr2L_16825519_16825593,CG31739 chr2L + chr2L_16827645_16827720 chr2L_16827644_16827645;chr2L_16827720_16827721 chr2L_16827494_16827644;chr2L_16827721_16827889 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA rhea,I_chr3L_8563622_8564067 chr3L + chr3L_8549072_8554458 chr3L_8549072_8554434 chr3L_8548854_8549071;chr3L_8554459_8554717 0.00 0.00 0.00 1.47 0.00 0.00 0.00 1.53 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 2.38 1.41 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K jcn_only_AA Rox8,I_chr3R_19872211_19872659,I_chr3R_19876189_19876240 chr3R - chr3R_19869850_19869918 chr3R_19869868_19869918 chr3R_19869919_19870012;chr3R_19869258_19869849 16.77 17.42 20.77 16.77 13.93 17.70 18.10 15.22 18.57 11.61 18.28 16.02 13.00 14.74 10.39 20.00 19.39 14.37 16.51 17.52 18.18 18.29 14.02 16.44 12.99 21.64 14.07 17.22 9.15 12.17 17.65 18.81 21.01 20.99 21.31 11.59 12.68 10.09 15.23 16.33 18.29 13.67 17.78 12.05 17.70 14.94 18.32 22.11 15.84 16.92 18.08 10.71 13.02 19.07 12.16 11.88 18.18 23.85 K jcn_only_AD CG10277,I_chr3R_2211939_2212057 chr3R + chr3R_2211921_2212057 chr3R_2211939_2212057 chr3R_2212058_2212157;chr3R_2211839_2211920 0.24 0.00 0.61 0.00 0.00 0.00 0.74 0.35 0.30 0.00 0.00 0.00 1.27 0.00 1.53 0.47 0.00 0.51 0.00 0.24 0.00 0.38 0.47 0.87 1.29 0.53 0.50 1.33 0.00 0.00 0.80 0.00 0.00 0.38 0.00 0.00 0.40 0.00 0.71 0.00 0.00 0.00 0.79 0.52 0.71 0.00 0.54 0.00 0.30 0.58 0.49 0.00 0.00 0.00 1.32 0.72 0.00 0.00 K intron_retention Tcp-1eta,CG8359 chr3R + chr3R_4629125_4631514 chr3R_4629124_4629125;chr3R_4631514_4631515 chr3R_4628801_4629124;chr3R_4631515_4631604 0.67 0.40 0.36 0.51 0.57 1.18 0.53 0.15 0.81 0.34 0.60 0.67 1.29 1.39 0.46 1.03 0.71 0.00 0.97 1.21 0.96 1.38 0.81 0.48 0.37 0.17 0.67 1.19 0.77 0.40 0.50 0.43 0.50 0.83 0.68 0.21 0.70 0.56 0.63 0.81 0.18 0.82 0.78 0.68 0.40 0.73 0.54 0.28 1.01 0.65 1.11 1.05 1.15 0.50 0.58 0.56 1.11 1.27 K intron_retention RI_chr2L_1170364_1170429,CG4887,REI_chr2L_1179197_1179859 chr2L + chr2L_1174267_1174496 chr2L_1174266_1174267;chr2L_1174496_1174497 chr2L_1174197_1174266;chr2L_1174497_1174570 10.64 4.35 15.38 0.00 0.00 11.76 16.00 20.00 10.53 NA 13.79 17.31 16.00 18.52 15.62 10.64 16.67 13.79 13.89 6.45 0.00 0.00 14.29 7.50 0.00 0.00 6.45 14.29 0.00 10.71 2.67 0.00 10.71 10.87 9.09 NA 6.45 6.67 0.00 12.24 5.26 11.11 11.11 11.76 4.35 4.76 11.54 12.50 12.50 9.09 15.15 0.00 0.00 4.76 17.50 0.00 18.52 10.53 K alternative_acceptor dpr17 chr3R + chr3R_7936756_7936825 chr3R_7936756_7936809 chr3R_7936554_7936755;chr3R_7936826_7937080 73.33 77.78 NA 91.67 NA 100.00 NA 83.33 80.95 NA 66.67 76.47 100.00 85.71 80.00 76.92 NA 81.82 87.50 71.88 NA 60.00 83.33 73.33 NA 90.00 61.54 NA 55.56 69.23 90.91 63.64 52.63 76.92 72.73 NA 71.43 60.00 64.29 75.00 91.67 59.09 100.00 68.18 61.90 69.57 52.63 47.06 83.33 73.33 69.57 90.91 NA 64.71 66.67 66.67 77.27 73.33 K alternative_donor Nedd4,I_chr3L_17532828_17532882,I_chr3L_17532828_17533787,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17532828_17533787 chr3L_17532837_17533787 chr3L_17533788_17533887;chr3L_17532728_17532827 92.86 100.00 92.31 100.00 NA 85.71 NA 92.31 94.74 NA NA 83.33 NA 100.00 90.91 NA NA 87.50 NA 88.89 NA 92.86 95.65 100.00 91.67 100.00 100.00 NA 92.31 100.00 100.00 NA 100.00 88.89 100.00 88.89 100.00 91.67 95.00 92.86 NA 95.00 NA 94.12 88.89 88.89 NA 100.00 92.86 88.89 100.00 100.00 NA 88.89 100.00 90.00 90.00 NA K alternative_acceptor CG17683,I_chr2R_18774_18869,I_chr2R_19002_19060 chr2R + chr2R_18998_19064 chr2R_18998_19060 chr2R_18902_18997;chr2R_19065_19124 100.00 95.83 92.31 95.83 100.00 100.00 93.94 100.00 100.00 100.00 93.75 96.55 100.00 95.00 94.12 100.00 100.00 100.00 93.75 100.00 92.86 100.00 100.00 100.00 100.00 100.00 97.44 100.00 94.44 94.12 96.88 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 96.30 90.00 96.55 100.00 95.24 92.31 100.00 85.71 100.00 97.14 100.00 92.59 100.00 100.00 93.75 100.00 94.74 96.30 93.33 K intron_retention scaf6,EI_chr3L_17037760_17037808 chr3L - chr3L_17032434_17032655 chr3L_17032433_17032434;chr3L_17032655_17032656 chr3L_17032357_17032433;chr3L_17032656_17032730 10.53 8.11 NA 10.81 0.00 6.67 25.00 14.63 13.46 6.25 0.00 19.23 11.76 0.00 22.22 16.28 5.26 NA NA 15.15 6.67 5.26 6.25 20.00 10.53 NA 0.00 NA 0.00 9.09 4.55 NA 0.00 13.04 10.53 7.69 10.71 5.88 NA 10.81 NA 18.52 15.38 0.00 NA 10.53 5.88 15.00 13.16 3.85 10.71 0.00 11.11 NA NA 16.67 8.33 10.53 K intron_retention Spargel,RI_chr3R_252723_254271,noncoding_14534 chr3R - chr3R_254346_254696 chr3R_254345_254346;chr3R_254696_254697 chr3R_254319_254345;chr3R_254697_254925 10.13 3.85 13.79 11.76 11.54 NA 12.00 10.26 15.69 9.52 0.00 14.63 10.71 9.09 19.05 12.50 12.50 11.54 3.57 6.25 0.00 36.00 8.57 7.14 16.67 14.29 23.08 13.79 22.22 20.00 9.52 NA 8.00 7.84 0.00 NA 6.67 0.00 9.52 9.68 NA 13.33 7.14 21.05 NA NA NA 14.29 14.00 6.67 8.33 0.00 NA NA 10.00 NA NA 6.67 K intron_retention CG17698 chr3L + chr3L_23739645_23740972 chr3L_23739644_23739645;chr3L_23740972_23740973 chr3L_23739290_23739644;chr3L_23740973_23741160 7.69 9.09 14.29 5.41 11.76 5.88 7.55 12.24 4.11 NA NA 20.59 12.00 13.79 18.75 6.00 5.88 7.14 8.33 8.00 NA NA 0.00 5.88 NA 0.00 11.54 NA NA NA 8.70 NA NA 4.65 14.29 NA NA NA 7.69 5.26 NA 15.69 10.00 17.65 NA 0.00 NA NA 4.44 0.00 9.38 11.76 NA NA 0.00 0.00 0.00 NA K alternative_acceptor CG5704,RI_chr3L_2170709_2170822 chr3L - chr3L_2170693_2170822 chr3L_2170709_2170822 chr3L_2170823_2170922;chr3L_2170609_2170692 0.00 0.00 3.23 0.00 0.00 0.00 0.00 2.38 2.27 NA 0.00 1.67 0.00 0.00 0.00 3.28 0.00 0.00 2.56 1.92 0.00 2.17 2.08 0.00 0.00 3.85 2.04 0.00 5.56 0.00 1.75 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 3.12 5.00 0.00 0.00 0.00 NA 0.00 2.22 0.00 3.64 0.00 2.67 2.63 0.00 0.00 0.00 2.56 0.00 0.00 K intron_retention CG6845,I_chr3L_148414_148465,I_chr3L_148414_148475,I_chr3L_148414_148489 chr3L + chr3L_148414_148465 chr3L_148413_148414;chr3L_148465_148466 chr3L_148350_148413;chr3L_148466_148555 85.16 NA NA 84.62 NA NA NA 85.71 91.67 NA NA 70.00 NA NA 88.89 84.62 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 90.91 NA NA NA NA NA NA NA 81.82 NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor Hrb98DE,I_chr3R_24425722_24428493,I_chr3R_24426291_24426781,RI_chr3R_24429041_24431183 chr3R + chr3R_24426291_24426439 chr3R_24426291_24426427 chr3R_24426191_24426290;chr3R_24426440_24426915 30.38 30.36 31.85 31.25 30.19 30.39 25.17 39.31 30.61 36.36 27.27 30.63 24.69 29.63 30.00 32.41 30.16 30.86 35.80 28.43 NA 29.38 30.06 33.33 34.09 46.15 28.77 22.12 32.74 34.00 30.08 30.25 34.88 37.10 30.65 37.50 29.11 27.14 28.48 28.57 33.33 31.84 36.78 27.05 34.58 32.88 25.95 35.42 30.33 29.46 31.29 35.71 25.26 30.15 32.31 27.93 30.16 29.46 K jcn_only_AA CG18811,I_chr3L_18664520_18664589,I_chr3L_18664773_18665233 chr3L - chr3L_18664520_18664589 chr3L_18664535_18664589 chr3L_18664590_18664689;chr3L_18664420_18664519 99.66 100.00 99.32 99.59 100.00 99.30 100.00 100.00 99.59 100.00 99.05 99.66 100.00 100.00 100.00 98.99 99.15 99.12 99.19 99.65 100.00 100.00 99.49 100.00 99.07 100.00 100.00 99.26 99.24 99.22 99.39 100.00 99.49 99.57 99.07 100.00 100.00 100.00 100.00 99.52 99.19 98.87 98.29 100.00 100.00 100.00 99.05 99.11 100.00 98.82 100.00 100.00 100.00 100.00 99.38 100.00 100.00 99.35 K jcn_only_AD chico,I_chr2L_10246534_10246899 chr2L - chr2L_10246040_10246184;chr2L_10246040_10247024;chr2L_10246040_10246867;chr2L_10246040_10246899 chr2L_10246040_10246755 chr2L_10245878_10246039;chr2L_10247025_10247051 4.17 0.00 2.13 5.00 4.17 0.00 10.42 7.94 7.87 NA 3.03 3.90 0.00 0.00 5.26 3.85 15.62 5.00 5.77 8.99 16.13 0.00 4.29 2.17 6.67 7.50 10.20 0.00 4.00 0.00 4.17 0.00 7.89 1.69 9.68 2.13 5.80 1.89 7.02 2.47 NA 4.62 8.33 4.92 4.17 8.82 0.00 2.27 8.54 4.88 0.00 6.06 7.89 0.00 4.35 0.00 3.45 2.70 K intron_retention CG7414,I_chr3L_21819515_21819581 chr3L + chr3L_21820136_21820193 chr3L_21820135_21820136;chr3L_21820193_21820194 chr3L_21820050_21820135;chr3L_21820194_21820958 1.54 1.23 0.00 2.35 3.92 0.00 0.00 0.00 0.00 5.56 0.00 1.94 0.00 0.00 0.00 6.45 0.00 0.00 1.47 1.54 0.00 0.00 7.35 4.76 0.00 0.00 8.06 19.51 0.00 3.08 0.00 2.04 1.54 4.40 2.44 2.70 4.76 3.12 4.26 3.05 0.00 1.65 0.00 3.26 0.00 4.88 1.45 1.96 0.00 2.90 5.26 0.00 1.32 0.00 1.10 2.38 1.61 3.49 K intron_retention CG5613 chrX + chrX_17322206_17322280 chrX_17322205_17322206;chrX_17322280_17322281 chrX_17321453_17322205;chrX_17322281_17322670 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 90.00 NA 100.00 100.00 100.00 100.00 NA 90.00 100.00 90.00 92.86 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 88.89 100.00 93.33 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 90.91 100.00 100.00 100.00 NA 100.00 100.00 NA 90.91 96.30 95.00 N jcn_only_AA HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13164676_13165514;chrX_13164727_13165514 chrX_13164646_13165514 chrX_13165515_13165622;chrX_13164424_13164645 8.00 10.77 6.25 18.26 12.68 11.76 16.26 9.78 7.20 7.32 10.19 8.22 6.67 7.25 11.29 8.95 5.06 9.76 6.92 19.31 11.21 8.06 11.79 5.38 10.83 4.97 9.45 5.13 15.70 9.69 6.37 7.78 6.96 5.81 8.46 7.50 10.73 7.98 14.21 7.97 8.57 5.49 10.88 7.10 6.17 9.93 8.00 7.73 9.32 5.84 7.69 6.38 4.29 4.11 7.05 6.86 12.94 11.30 K intron_retention kis,I_chr2L_228282_230537,RI_chr2L_231035_231947,RI_chr2L_242745_242800,I_chr2L_242926_250756 chr2L - chr2L_227548_228132 chr2L_227547_227548;chr2L_228132_228133 chr2L_227372_227547;chr2L_228133_228281 18.18 23.08 18.57 33.00 18.18 14.93 24.66 18.85 27.71 16.67 26.09 19.20 16.95 17.33 20.99 19.48 17.65 16.92 16.67 17.61 16.36 63.01 13.79 16.09 25.30 29.27 13.16 18.37 27.78 22.09 13.43 21.21 36.23 15.74 20.00 26.67 18.29 16.88 16.67 21.11 27.27 25.74 20.83 27.88 16.67 12.07 15.79 21.79 18.18 11.63 15.69 25.42 3.64 13.79 15.56 16.28 8.00 14.93 K intron_retention CG5004,E_chrX_17024712_17024996 chrX + chrX_17028704_17028777 chrX_17028703_17028704;chrX_17028777_17028778 chrX_17028258_17028703;chrX_17028778_17028910 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.39 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 K intron_retention CG7420 chr2L - chr2L_1501037_1501096 chr2L_1501036_1501037;chr2L_1501096_1501097 chr2L_1500970_1501036;chr2L_1501097_1501164 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 5.26 0.00 NA 0.00 0.00 NA 5.88 0.00 0.00 NA 0.00 NA NA 6.67 NA 0.00 0.00 NA 4.76 NA NA NA 0.00 0.00 0.00 22.73 0.00 NA NA 0.00 5.26 0.00 0.00 0.00 0.00 3.85 NA 0.00 0.00 5.56 0.00 0.00 0.00 K cassette Ranbp16,I_chrX_15826655_15827277 chrX - chrX_15823831_15824013 chrX_15823831_15823886;chrX_15823949_15824013 chrX_15823887_15823948 chrX_15823691_15823830;chrX_15824014_15824091 100.00 100.00 100.00 100.00 100.00 100.00 95.83 96.55 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 94.44 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA NA 100.00 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA K alternative_donor F_chr3L_6602496_6609177,CG8398 chr3L + chr3L_6606753_6608997 chr3L_6606922_6608997 chr3L_6608998_6609696;chr3L_6606636_6606752 59.26 59.46 52.83 72.94 41.67 45.95 73.03 62.39 65.94 66.67 55.56 50.57 63.49 59.38 61.02 61.21 67.21 56.36 68.75 45.71 55.56 48.42 68.29 59.26 73.33 60.00 65.71 37.50 47.06 61.90 52.86 76.47 64.71 65.59 57.14 64.71 44.44 50.00 45.83 45.24 71.43 58.56 54.17 62.07 55.56 61.29 56.25 57.14 56.36 55.00 50.00 60.87 62.50 40.00 53.70 48.15 62.16 77.27 N cassette msn,I_chr3L_2558033_2560115,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2558390_2561931;chr3L_2558036_2563817;chr3L_2558390_2563817 chr3L_2558390_2560115,chr3L_2558036_2560115;chr3L_2560296_2561931,chr3L_2560296_2563817 chr3L_2560116_2560295 chr3L_2557936_2558035;chr3L_2563818_2563917 97.92 96.11 98.62 95.26 95.54 99.01 94.24 97.06 93.78 98.74 99.31 97.15 91.67 99.38 96.41 99.41 98.53 95.73 98.73 99.37 97.56 87.80 94.67 96.37 97.88 97.58 92.36 94.33 98.48 95.89 98.53 99.56 99.87 99.66 96.19 97.09 95.28 98.14 96.59 97.92 95.73 98.68 99.29 97.48 95.56 99.01 100.00 98.01 99.26 96.73 94.82 98.95 99.54 98.73 98.25 98.53 100.00 99.74 K intron_retention Not1,I_chr2R_5463624_5463682 chr2R - chr2R_5455592_5456067 chr2R_5455591_5455592;chr2R_5456067_5456068 chr2R_5455002_5455591;chr2R_5456068_5456427 4.30 5.93 3.42 9.28 5.45 4.13 4.83 3.26 4.76 2.50 6.48 5.13 9.00 3.10 4.91 2.08 3.76 4.84 5.56 5.33 8.33 8.33 4.51 4.55 2.97 3.85 6.59 6.94 3.77 4.55 2.24 4.44 2.41 3.53 5.13 3.85 3.49 4.00 2.49 3.81 0.00 3.28 3.31 3.35 1.85 4.35 5.04 1.54 4.48 4.49 4.30 5.19 3.09 6.74 4.97 3.76 2.92 0.81 K intron_retention Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11836216_11836312 chr2R_11836215_11836216;chr2R_11836312_11836313 chr2R_11835669_11836215;chr2R_11836313_11836490 0.98 0.00 0.93 1.91 0.00 0.00 0.76 2.01 1.79 0.00 0.00 1.16 0.00 0.00 2.73 0.00 1.52 0.00 0.90 0.98 0.00 2.94 5.31 2.60 3.39 4.12 7.50 5.88 8.33 0.00 2.56 0.00 0.00 1.25 1.59 0.00 4.17 0.00 1.57 0.76 3.39 2.37 1.37 0.00 0.00 0.00 0.00 3.12 0.58 0.00 4.17 3.17 3.12 0.00 2.04 0.00 0.00 2.38 K cassette CG11870,I_chr3R_6124314_6124732 chr3R + chr3R_6124314_6125355 chr3R_6124314_6124723;chr3R_6124781_6125355 chr3R_6124724_6124780 chr3R_6124214_6124313;chr3R_6125356_6125474 4.03 4.35 0.00 0.00 NA 0.00 NA NA 3.70 6.67 NA 7.69 NA NA NA NA NA NA NA 5.71 NA 13.56 8.93 3.70 0.00 NA 6.25 18.75 7.41 3.33 NA 6.25 5.71 0.00 0.00 6.45 4.55 2.94 6.06 5.56 0.00 3.45 0.00 5.56 2.13 5.56 2.38 2.86 4.76 8.70 6.45 4.35 0.00 0.00 NA 3.70 3.45 2.78 K alternative_acceptor CG12567,I_chr2LHet_20671_20722,I_chr2LHet_21570_31874 chr2LHet - chr2LHet_20651_20722 chr2LHet_20671_20722 chr2LHet_20723_20822;chr2LHet_20571_20650 0.85 0.00 0.00 3.95 0.00 0.00 1.74 1.70 1.49 1.46 0.00 1.95 1.09 1.10 0.80 3.08 0.00 1.72 1.38 0.62 0.98 0.60 0.00 0.82 0.00 0.80 5.61 3.54 2.98 1.42 0.70 1.02 0.62 1.01 2.15 0.74 0.85 0.00 0.92 0.25 0.00 1.81 0.00 2.37 1.79 1.17 1.08 0.52 0.80 0.00 2.80 2.11 0.80 0.00 0.00 0.99 0.00 0.51 K intron_retention CG4036 chr2L + chr2L_9790716_9790968 chr2L_9790715_9790716;chr2L_9790968_9790969 chr2L_9790667_9790715;chr2L_9790969_9791694 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 NA 90.91 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA 88.89 NA 100.00 100.00 100.00 100.00 100.00 NA NA NA NA NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 K intron_retention CG12118,RI_chrX_9090173_9090228 chrX - chrX_9090153_9090228 chrX_9090152_9090153;chrX_9090228_9090229 chrX_9090085_9090152;chrX_9090229_9090294 5.75 NA NA NA NA NA 6.67 0.00 5.26 NA NA 0.00 NA NA NA 15.38 NA NA NA 5.26 NA NA 11.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.25 NA 7.69 NA NA NA NA NA 0.00 NA K intron_retention jim,I_chr3L_22791582_22791898 chr3L - chr3L_22792549_22793040 chr3L_22792548_22792549;chr3L_22793040_22793041 chr3L_22792351_22792548;chr3L_22793041_22793884 4.35 0.00 0.00 2.94 11.11 10.00 14.29 4.35 8.00 NA NA 0.00 0.00 NA 12.50 5.56 0.00 0.00 11.11 5.88 0.00 6.00 6.25 0.00 NA 5.00 0.00 NA 0.00 7.14 0.00 NA 6.67 3.57 NA 12.00 7.89 4.35 3.23 4.76 NA 10.87 9.52 10.00 NA NA 9.09 0.00 2.94 0.00 0.00 NA 0.00 0.00 4.55 0.00 0.00 NA K intron_retention sdt,E_chrX_8118081_8119115,C_chrX_8118081_8119117,I_chrX_8131684_8131842 chrX + chrX_8118081_8119111 chrX_8118080_8118081;chrX_8119111_8119112 chrX_8117989_8118080;chrX_8119112_8119214 4.42 0.00 11.76 5.26 13.64 15.79 35.71 4.76 11.54 0.00 NA 5.56 NA NA 8.00 3.45 NA NA 20.00 6.12 NA 2.38 0.00 3.45 6.67 22.73 7.41 NA 0.00 0.00 12.50 NA 0.00 21.05 0.00 9.09 3.57 0.00 4.08 2.56 11.76 10.87 NA 0.00 0.00 NA NA 9.62 11.11 0.00 0.00 7.41 0.00 NA 0.00 0.00 NA 2.17 K intron_retention mod chr3R + chr3R_27880080_27880145 chr3R_27880079_27880080;chr3R_27880145_27880146 chr3R_27879345_27880079;chr3R_27880146_27880704 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.39 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 1.08 0.33 0.00 0.00 0.00 0.32 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.81 0.23 0.00 0.14 0.00 0.22 0.00 0.40 0.00 0.00 0.00 0.00 0.20 K jcn_only_AA TMS1 chr3L + chr3L_16407594_16407920;chr3L_16407594_16407914;chr3L_16407594_16407893;chr3L_16407594_16407902 chr3L_16407594_16407905 chr3L_16407384_16407593;chr3L_16407921_16408056 0.07 0.35 0.20 0.13 0.00 0.00 0.26 0.14 0.10 0.00 0.00 0.00 0.00 0.58 0.18 0.43 0.27 0.46 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 0.21 0.15 0.08 0.28 0.00 0.00 0.00 0.35 0.00 0.13 0.12 0.10 0.00 0.17 0.00 0.32 0.00 0.00 0.35 0.00 0.18 0.00 0.26 0.26 0.00 0.00 0.16 0.17 K alternative_donor CG4389,I_chr2L_9576230_9576665 chr2L - chr2L_9576230_9576665;chr2L_9576230_9576517 chr2L_9576230_9576635 chr2L_9576130_9576229;chr2L_9576666_9576755 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD ras chrX + chrX_10639998_10640108 chrX_10640017_10640108 chrX_10640109_10640259;chrX_10639995_10639997 100.00 100.00 96.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 97.56 100.00 98.48 100.00 100.00 100.00 100.00 100.00 98.04 100.00 100.00 100.00 96.59 98.08 98.63 100.00 97.53 100.00 98.31 98.59 99.34 100.00 100.00 98.81 100.00 100.00 100.00 99.44 99.05 100.00 100.00 99.32 96.91 100.00 100.00 99.28 99.37 100.00 99.21 98.86 98.13 100.00 100.00 98.81 98.08 100.00 K intron_retention Dp,I_chr2R_9111166_9112971,REI_chr2R_9113257_9113316 chr2R + chr2R_9114288_9114350 chr2R_9114287_9114288;chr2R_9114350_9114351 chr2R_9114205_9114287;chr2R_9114351_9114434 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG1646,RI_chr3R_24638061_24638116,RI_chr3R_24638209_24638280,I_chr3R_24641816_24641874 chr3R + chr3R_24637877_24638116 chr3R_24638061_24638116 chr3R_24638117_24638208;chr3R_24637841_24637876 0.00 0.00 3.03 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 1.19 1.23 0.00 0.66 1.27 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette stj chr2R + chr2R_9698342_9701304 chr2R_9698342_9698702;chr2R_9698760_9701304 chr2R_9698703_9698759 chr2R_9698258_9698341;chr2R_9701305_9701385 6.45 14.29 5.26 9.09 0.00 0.00 10.00 15.00 2.27 3.45 NA 4.55 4.76 0.00 8.33 15.38 10.00 6.67 15.38 5.13 NA 12.00 4.76 3.57 8.70 5.00 2.56 NA 11.76 7.14 8.33 NA 4.17 5.26 NA 13.33 1.92 4.35 6.25 2.50 4.00 8.70 NA 12.12 0.00 11.11 7.41 5.26 8.70 NA 6.45 4.55 10.81 NA 8.70 0.00 11.63 8.89 K alternative_acceptor Mocs1 chr3L + chr3L_11065511_11065569;chr3L_11065511_11065661 chr3L_11065511_11065549 chr3L_11064659_11065510;chr3L_11065662_11066454 2.38 0.00 4.55 0.00 0.00 0.00 5.71 0.00 5.41 0.00 0.00 0.00 7.69 0.00 0.00 14.81 0.00 5.88 5.00 2.70 6.67 4.55 2.33 0.00 3.70 0.00 2.38 3.45 3.08 3.12 0.00 2.70 7.14 0.00 4.00 0.00 0.00 0.00 3.12 2.00 4.08 5.88 0.00 0.00 3.77 2.33 0.00 1.82 6.25 2.78 2.86 5.56 0.00 0.00 5.26 0.00 3.23 7.14 K alternative_donor CG4452 chr3L + chr3L_9361114_9361200 chr3L_9361118_9361200 chr3L_9361201_9361314;chr3L_9361049_9361113 0.00 0.00 0.00 1.72 0.00 2.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 1.41 0.00 0.00 0.00 0.00 2.56 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Cp1,Aats-phe chr2R + chr2R_9852992_9854259 chr2R_9852991_9852992;chr2R_9854259_9854260 chr2R_9852694_9852991;chr2R_9854260_9854474 32.54 29.63 24.14 22.03 27.27 31.25 37.04 32.65 36.76 NA 34.78 53.45 51.61 34.88 39.29 27.78 35.48 52.50 29.27 27.16 29.17 30.91 37.84 32.43 45.45 25.00 50.00 43.75 39.13 26.32 18.27 23.08 33.33 25.45 46.43 23.53 35.71 39.13 33.33 31.37 26.32 28.81 33.33 33.33 24.00 33.33 31.82 33.33 36.23 28.57 36.11 45.00 30.77 20.00 38.89 16.67 29.09 20.63 K cassette Kdm4B chr2R - chr2R_9075414_9085717 chr2R_9075414_9085181;chr2R_9085665_9085717 chr2R_9085182_9085664 chr2R_9075201_9075413;chr2R_9085718_9085796 89.66 90.91 88.89 82.86 90.00 95.45 92.68 76.60 85.94 100.00 94.44 89.09 87.10 93.10 85.19 85.37 96.30 80.95 89.66 74.47 90.91 91.67 85.29 91.30 93.33 100.00 100.00 78.57 76.92 94.12 86.21 83.33 85.00 95.35 84.62 92.31 91.67 80.95 89.29 100.00 62.50 93.48 91.67 95.65 87.50 91.67 81.82 84.00 93.48 80.00 89.66 93.33 84.62 100.00 100.00 88.89 88.89 92.86 K alternative_donor slmb,I_chr3R_16951107_16953048 chr3R - chr3R_16951107_16953115 chr3R_16951107_16952659 chr3R_16951007_16951106;chr3R_16953116_16953148 100.00 98.55 100.00 99.05 100.00 100.00 100.00 100.00 99.38 98.28 100.00 99.11 98.46 100.00 98.73 99.14 100.00 98.51 100.00 99.42 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.85 100.00 100.00 100.00 96.23 100.00 98.59 98.65 98.91 100.00 100.00 99.26 100.00 98.53 98.21 98.85 100.00 100.00 98.21 100.00 99.25 98.41 98.96 100.00 100.00 100.00 98.84 100.00 100.00 98.73 K jcn_only_AA sec24,RI_chr2R_5764938_5764997,I_chr2R_5768722_5769689 chr2R - chr2R_5764938_5764997 chr2R_5764945_5764997 chr2R_5764998_5765095;chr2R_5764838_5764937 100.00 100.00 98.96 99.32 100.00 100.00 100.00 100.00 99.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.13 100.00 100.00 99.28 100.00 100.00 100.00 100.00 99.15 98.80 98.80 99.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.88 99.52 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.24 100.00 K intron_retention mts,RI_chr2L_7828669_7830461,RI_chr2L_7828959_7830461 chr2L + chr2L_7828154_7830461 chr2L_7828153_7828154;chr2L_7830461_7830462 chr2L_7827683_7828153;chr2L_7830462_7830561 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.36 0.00 0.00 0.00 0.22 0.00 0.00 0.29 0.35 0.00 0.93 0.00 0.00 0.00 0.00 0.28 0.00 0.64 0.00 0.00 0.00 0.00 0.37 0.91 0.00 0.00 0.00 0.00 0.34 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mld,atl chr3R + chr3R_20456473_20457504 chr3R_20456472_20456473;chr3R_20457504_20457505 chr3R_20456417_20456472;chr3R_20457505_20457813 5.56 NA NA 6.25 NA NA NA 5.56 NA NA NA 11.11 NA NA NA 10.00 NA NA NA 11.11 NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA 5.88 NA 7.14 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 K intron_retention CG3967,RI_chr3L_9408567_9410728,RI_chr3L_9412100_9412179 chr3L - chr3L_9410915_9411443 chr3L_9410914_9410915;chr3L_9411443_9411444 chr3L_9410752_9410914;chr3L_9411444_9411824 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 NA 0.00 5.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG14446 chrX + chrX_6123824_6123881 chrX_6123824_6123878 chrX_6123404_6123823;chrX_6123882_6124017 4.96 4.76 3.57 7.14 0.00 4.35 2.38 0.00 11.76 9.09 0.00 6.58 3.57 4.55 3.23 5.26 9.09 4.17 5.56 5.08 4.35 2.22 8.11 5.13 4.55 4.35 3.85 5.88 3.85 6.06 2.33 6.67 4.44 7.32 3.57 7.69 5.56 7.14 4.65 7.02 0.00 4.84 0.00 5.71 0.00 2.94 6.25 4.69 5.08 7.69 6.67 11.76 7.14 NA 6.06 NA NA 5.26 K intron_retention Adar,I_chrX_1668256_1682696,I_chrX_1674594_1674717 chrX + chrX_1672733_1672847 chrX_1672732_1672733;chrX_1672847_1672848 chrX_1672645_1672732;chrX_1672848_1672993 0.00 0.00 0.00 8.77 6.45 0.00 7.69 3.17 2.67 0.00 34.62 3.92 0.00 3.03 4.26 4.17 3.33 0.00 0.00 2.60 12.12 0.00 0.00 3.45 0.00 6.25 9.80 0.00 NA 0.00 0.00 NA 0.00 5.71 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 3.92 0.00 0.00 0.00 K jcn_only_AD Dcp2,F_chr3L_15815909_15816023,F_chr3L_15817090_15817547 chr3L - chr3L_15817090_15819385;chr3L_15817090_15818570 chr3L_15817090_15817547 chr3L_15816990_15817089;chr3L_15819386_15819487 0.00 0.00 1.89 0.00 0.00 0.00 0.00 2.27 0.00 5.00 3.03 0.00 0.00 1.49 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 4.00 0.00 0.00 0.00 2.13 NA 3.77 1.27 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.97 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA K alternative_donor CG7337,I_chr2L_1910010_1910066,RI_chr2L_1911951_1913208,RI_chr2L_1912284_1913208,I_chr2L_1938620_1938887,I_chr2L_1942183_1942233 chr2L + chr2L_1912235_1913208;chr2L_1911870_1913208;chr2L_1911951_1913208 chr2L_1912284_1913208 chr2L_1913209_1913308;chr2L_1911851_1911869 27.75 22.22 42.86 22.22 40.00 20.00 62.50 38.10 46.15 NA 22.22 31.58 16.67 25.00 33.33 37.93 36.36 23.08 60.00 21.74 18.18 57.14 20.00 22.22 40.00 28.57 18.18 NA NA 20.00 26.92 NA NA 43.48 66.67 16.67 NA 28.57 NA 18.18 NA 33.33 36.36 25.00 NA NA NA 0.00 33.33 NA 21.43 28.57 NA NA 26.67 NA NA NA K intron_retention Atf6,noncoding_4459 chr2R + chr2R_1032364_1035705 chr2R_1032363_1032364;chr2R_1035705_1035706 chr2R_1032236_1032363;chr2R_1035706_1035939 0.00 NA NA 15.00 NA NA 6.25 0.00 6.67 NA NA 0.00 0.00 0.00 NA 8.33 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 4.35 NA NA NA NA NA 0.00 NA 5.88 NA NA NA NA NA 0.00 7.50 NA 0.00 NA NA NA NA NA NA 0.00 K alternative_donor CG32772,CG6903 chrX + chrX_4803353_4803484;chrX_4803395_4803484;chrX_4803206_4803484 chrX_4803242_4803484 chrX_4803485_4803830;chrX_4803181_4803205 20.00 NA NA 0.00 NA NA 25.00 0.00 20.00 NA NA 50.00 NA 40.00 NA 25.00 NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA 25.00 66.67 NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA 57.14 K intron_retention Arf51F chr2R + chr2R_11211653_11211706 chr2R_11211652_11211653;chr2R_11211706_11211707 chr2R_11211350_11211652;chr2R_11211707_11211855 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.26 0.91 0.00 1.15 1.36 7.26 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 1.07 0.00 0.00 0.00 0.17 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA mor chr3R - chr3R_11795125_11795603 chr3R_11795317_11795603 chr3R_11795604_11795814;chr3R_11794297_11795124 66.67 56.15 73.00 66.67 43.10 21.28 62.50 70.55 74.06 54.29 61.43 67.57 62.04 70.21 57.94 82.44 73.13 67.06 76.92 56.66 46.38 38.46 56.54 71.22 76.34 92.59 59.74 43.36 77.25 58.75 78.26 62.50 61.97 68.75 53.24 91.33 65.54 66.44 67.07 75.10 75.56 67.44 72.50 77.04 47.45 78.97 64.13 65.30 73.51 61.78 58.68 72.88 62.61 66.13 71.68 71.34 65.00 68.07 K intron_retention l(3)neo43,F_chr3R_11104164_11104239 chr3R - chr3R_11104164_11104224 chr3R_11104163_11104164;chr3R_11104224_11104225 chr3R_11104066_11104163;chr3R_11104225_11104282 0.00 0.00 NA 0.00 NA NA NA 5.56 8.70 NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 7.69 4.88 0.00 NA 0.00 0.00 NA 0.00 5.26 NA NA NA 0.00 NA 7.69 5.56 NA 14.29 0.00 0.00 0.00 7.69 NA 6.67 NA 5.56 NA 9.09 0.00 NA 0.00 8.00 3.70 NA 0.00 0.00 NA 7.69 6.82 0.00 N jcn_only_AA RI_chr3L_9408567_9410728,RpS17,I_chr3L_9422428_9422797,snoRNA:Psi28S-612 chr3L - chr3L_9422408_9422794 chr3L_9422426_9422794 chr3L_9422795_9422827;chr3L_9422328_9422407 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention I_chr2R_2754447_2755071,Spn4,CG9454 chr2R - chr2R_2764239_2764449 chr2R_2764238_2764239;chr2R_2764449_2764450 chr2R_2764101_2764238;chr2R_2764450_2764627 100.00 95.65 100.00 95.83 93.75 100.00 100.00 97.73 100.00 100.00 93.33 97.87 100.00 100.00 100.00 100.00 95.24 95.83 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 97.14 96.77 100.00 100.00 100.00 96.43 100.00 97.50 97.73 K intron_retention Myd88 chr2R - chr2R_5193262_5194773 chr2R_5193261_5193262;chr2R_5194773_5194774 chr2R_5192972_5193261;chr2R_5194774_5196200 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.82 0.00 0.00 1.82 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon Ranbp16,I_chrX_15826655_15827277 chrX - chrX_15822964_15823205 chrX_15823118_15823205 chrX_15822670_15822963 chrX_15823049_15823117 chrX_15823206_15823291 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA K alternative_donor sar1,I_chr3R_18184656_18185246,I_chr3R_18185015_18185246,I_chr3R_18185148_18185246 chr3R + chr3R_18184656_18185246;chr3R_18184351_18185246;chr3R_18185015_18185246 chr3R_18185148_18185246 chr3R_18185247_18185346;chr3R_18184285_18184350 0.24 0.00 0.31 0.26 0.00 0.00 0.29 0.26 0.20 0.00 0.00 0.22 0.00 0.47 0.30 0.34 0.00 0.00 0.37 0.58 0.43 0.41 0.30 0.00 0.00 0.00 0.33 1.78 1.08 0.39 0.34 0.00 0.00 0.00 0.00 0.37 0.00 0.35 0.00 0.24 0.36 0.20 0.00 0.44 0.00 0.23 0.30 0.50 0.22 0.35 0.28 0.56 0.00 0.30 0.00 0.32 0.00 0.00 K intron_retention CG12746,Rheb chr3R + chr3R_1392608_1392666 chr3R_1392607_1392608;chr3R_1392666_1392667 chr3R_1392189_1392607;chr3R_1392667_1393181 0.00 0.00 0.00 8.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 3.45 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 2.78 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG18812,I_chr2R_3617214_3617883,I_chr2R_3617214_3622585 chr2R - chr2R_3617087_3617146 chr2R_3617086_3617087;chr2R_3617146_3617147 chr2R_3616935_3617086;chr2R_3617147_3617213 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Nipped-B,R_chr2R_590026_590111,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_588767_599318 chr2R_588766_588767;chr2R_599318_599319 chr2R_588445_588766;chr2R_599319_599550 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 K alternative_donor Spred,I_chr2R_10655876_10656041,I_chr2R_10655876_10656193,I_chr2R_10655876_10656868 chr2R - chr2R_10655876_10656878;chr2R_10655876_10656782;chr2R_10655876_10656526;chr2R_10655876_10656871 chr2R_10655876_10656848 chr2R_10655776_10655875;chr2R_10656879_10656886 0.00 0.00 0.00 2.94 6.67 0.00 0.00 0.00 1.72 0.00 0.00 3.57 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 16.67 0.00 0.00 0.00 0.00 0.00 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention eIF-4a,I_chr2L_5985221_5985289 chr2L + chr2L_5985221_5985338 chr2L_5985220_5985221;chr2L_5985338_5985339 chr2L_5985121_5985220;chr2L_5985339_5985389 14.79 14.50 10.61 22.10 13.01 13.35 15.17 17.29 17.43 16.20 11.25 17.06 15.24 18.52 17.47 21.49 16.04 11.36 15.70 11.36 11.36 13.11 16.61 13.63 14.04 14.20 20.70 13.80 32.96 9.81 16.59 14.88 18.35 15.38 14.71 11.99 15.34 11.92 10.85 13.14 14.79 13.81 16.71 17.17 17.95 15.56 11.62 17.24 17.26 14.53 14.51 14.28 13.58 10.67 14.98 13.86 13.45 20.00 K jcn_only_AA CG14235,noncoding_24847,CG18809,noncoding_24848 chrX - chrX_19635202_19638294;chrX_19635199_19638294 chrX_19635236_19638294 chrX_19638295_19638317;chrX_19634765_19635198 0.00 0.40 0.37 0.00 0.38 0.00 0.00 0.26 0.00 0.00 0.00 0.25 0.00 0.00 0.16 0.55 0.00 0.21 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.40 0.00 0.00 0.15 0.00 0.74 0.32 0.00 0.00 0.00 0.00 0.17 0.00 1.32 0.21 0.00 0.46 0.41 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.17 0.20 0.11 0.31 K intron_retention blp,EI_chr3R_11759655_11759701,Sap47 chr3R + chr3R_11759655_11759721 chr3R_11759654_11759655;chr3R_11759721_11759722 chr3R_11759632_11759654;chr3R_11759722_11759801 0.00 0.00 0.00 8.51 0.00 0.00 3.57 3.03 1.30 0.00 0.00 2.90 0.00 0.00 0.00 4.94 0.00 0.00 0.00 2.22 0.00 0.00 6.25 0.00 0.00 10.53 0.00 12.50 8.11 0.00 0.00 0.00 0.00 1.54 0.00 7.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 4.26 3.06 K cassette how chr3R + chr3R_17897764_17903005 chr3R_17897764_17900170;chr3R_17900667_17903005 chr3R_17900171_17900666 chr3R_17897461_17897763;chr3R_17903006_17903074 100.00 100.00 100.00 98.44 100.00 97.22 100.00 98.57 98.89 96.00 96.00 98.63 96.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 98.00 100.00 100.00 96.43 100.00 100.00 100.00 88.46 100.00 100.00 94.12 100.00 100.00 96.67 97.14 97.87 100.00 96.97 98.44 95.45 100.00 100.00 100.00 95.24 100.00 96.77 100.00 98.61 97.44 100.00 100.00 100.00 100.00 97.83 100.00 100.00 97.37 K jcn_only_AA CG7843,I_chr2R_1972736_1972822 chr2R - chr2R_1971513_1972012;chr2R_1971883_1972012 chr2R_1971896_1972012 chr2R_1972013_1972292 8.51 7.58 6.06 14.85 10.00 3.28 6.36 8.51 4.70 27.03 11.11 3.36 5.26 6.35 8.54 8.41 5.33 3.33 10.47 8.13 3.64 7.06 7.14 13.10 13.04 8.26 16.88 12.00 9.09 8.51 38.35 9.38 12.33 6.56 7.25 19.15 8.06 3.45 6.25 13.08 9.30 9.49 15.25 7.27 8.82 9.23 7.14 8.86 9.23 9.46 10.84 16.33 6.25 0.00 7.69 14.75 2.33 10.96 K jcn_only_AA Amph,I_chr2R_8498227_8498492 chr2R + chr2R_8498227_8498513 chr2R_8498227_8498492 chr2R_8498127_8498226;chr2R_8498514_8498592 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.82 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.76 0.00 0.00 0.00 0.00 NA 0.00 5.00 0.00 0.00 0.00 0.00 NA 3.45 0.00 4.55 0.00 0.00 0.00 0.00 2.56 0.00 0.00 1.59 0.00 0.00 0.00 0.00 3.85 NA 0.00 4.00 1.54 0.00 0.00 1.94 K alternative_donor chic,RI_chr2L_5976783_5980950,I_chr2L_5979705_5979818,I_chr2L_5979705_5979941,RI_chr2L_5979705_5979951,I_chr2L_5979705_5979953,I_chr2L_5979705_5980025,I_chr2L_5979705_5980213,I_chr2L_5979705_5980370,I_chr2L_5979705_5980558,I_chr2L_5979705_5980632,I_chr2L_5979705_5980639,RI_chr2L_5979705_5980734 chr2L - chr2L_5979705_5980846;chr2L_5979705_5980950 chr2L_5979705_5980952 chr2L_5979605_5979704;chr2L_5980953_5981025 22.12 26.44 27.15 23.39 25.27 28.80 20.49 25.97 28.19 13.79 26.25 30.00 22.22 30.30 25.20 28.87 15.19 24.51 22.96 26.58 22.73 28.85 19.35 18.42 19.51 17.53 10.87 14.86 17.36 26.06 19.09 22.14 21.69 26.91 22.12 25.66 17.07 17.39 16.36 17.69 21.98 20.21 29.59 14.96 30.00 17.57 19.23 25.75 31.00 20.00 19.23 17.02 14.29 12.12 20.00 14.29 22.35 26.47 N intron_retention klar,I_chr3L_462559_472609,RI_chr3L_517594_539898 chr3L - chr3L_451328_452837 chr3L_451327_451328;chr3L_452837_452838 chr3L_451127_451327;chr3L_452838_453488 79.76 84.09 83.53 100.00 81.25 81.94 76.34 78.76 84.06 100.00 81.40 84.67 87.88 87.93 87.50 100.00 86.15 68.54 82.86 100.00 100.00 60.00 80.26 77.39 70.00 82.69 82.24 68.25 68.29 62.92 80.41 43.86 42.86 83.74 76.56 79.76 81.38 79.38 78.18 72.67 51.72 81.60 83.93 80.58 56.92 64.44 77.61 48.85 83.94 79.45 75.82 74.24 77.05 73.91 79.59 75.81 83.67 58.33 K alternative_last_exon cwo,noncoding_15870,chr3R_6215619_6216520.0,chr3R_6216827_6217291.0,chr3R_6217556_6219555.0,chr3R_6219984_6221958.0 chr3R + chr3R_6215160_6222426,chr3R_6215160_6222423,chr3R_6215160_6222418 chr3R_6215160_6221958 chr3R_6222427_6222542 chr3R_6221959_6222030 chr3R_6214846_6215159 16.67 6.67 31.25 5.00 10.00 27.27 25.00 20.83 23.08 0.00 10.00 5.88 0.00 14.29 14.29 12.00 8.33 25.00 31.25 18.18 22.22 18.92 20.00 8.70 23.08 8.33 14.29 12.50 44.44 14.29 15.38 25.00 18.92 19.23 16.67 0.00 10.71 10.53 11.11 16.67 44.00 16.67 10.00 26.32 47.83 36.84 50.00 15.62 20.83 21.43 4.55 6.25 40.00 22.22 11.76 8.33 26.67 31.43 K alternative_acceptor RpL15 chr3LHet + chr3LHet_2397992_2398127 chr3LHet_2397992_2398049 chr3LHet_2397802_2397991;chr3LHet_2398128_2398454 96.40 95.79 93.64 98.81 96.61 95.83 97.35 97.89 96.87 95.71 99.24 96.62 96.60 98.06 96.99 95.38 97.22 97.75 98.67 95.68 96.40 99.44 95.59 92.77 98.90 99.13 95.24 98.15 93.90 93.59 99.35 93.98 99.21 96.46 97.92 91.38 95.96 96.08 94.57 96.15 95.83 96.65 95.80 92.31 97.73 95.60 92.63 98.81 96.47 92.45 90.54 97.26 96.15 88.24 99.22 95.15 95.24 99.15 K alternative_donor CG9170 chrX - chrX_15876723_15876794 chrX_15876723_15876790 chrX_15876397_15876722;chrX_15876795_15876950 80.91 NA NA 55.56 NA NA NA 75.00 61.54 NA NA 63.64 NA NA NA 88.89 NA NA NA 80.00 NA 90.00 91.67 85.71 87.50 NA 81.82 NA 87.50 66.67 83.33 NA 88.89 88.89 NA 69.23 NA 70.00 85.71 80.00 NA 69.23 NA 87.50 NA NA NA NA NA NA 66.67 NA NA NA 50.00 NA 70.00 85.71 K intron_retention sec31,I_chr2R_4783150_4783708 chr2R + chr2R_4783150_4783291 chr2R_4783149_4783150;chr2R_4783291_4783292 chr2R_4783050_4783149;chr2R_4783292_4783347 11.80 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA 11.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG8866,I_chr3R_5160165_5160221 chr3R - chr3R_5158590_5158651 chr3R_5158589_5158590;chr3R_5158651_5158652 chr3R_5158405_5158589;chr3R_5158652_5159382 0.00 NA NA 4.76 NA NA NA 5.88 4.76 NA NA 0.00 NA NA NA NA NA NA NA 6.67 NA 0.00 NA NA NA NA 5.00 21.43 NA 0.00 NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA K jcn_only_AA None chrU + chrU_1178980_1179256;chrU_1178980_1183262 chrU_1178980_1179142 20.00 NA NA NA NA NA NA NA 18.75 NA NA 18.18 NA NA NA 19.05 NA NA 23.81 7.69 NA NA NA NA NA NA NA NA NA NA 30.00 NA NA 26.92 NA NA NA NA NA 45.00 NA 22.22 NA NA NA NA NA NA 14.81 20.00 NA NA NA NA NA NA NA NA K alternative_donor RI_chrX_502548_513324,CG13366,I_chrX_508729_508806,I_chrX_509497_513324,I_chrX_509727_511407,I_chrX_509727_511477,noncoding_21186,I_chrX_509834_511407,CRE_chrX_509851_511307,I_chrX_510004_511307,I_chrX_510004_511407,I_chrX_513176_513324,I_chrX_513519_513631 chrX - chrX_509834_511307;chrX_509834_511477;chrX_509834_511413 chrX_509834_511407 chrX_509751_509833;chrX_511478_511507 26.67 NA NA 22.22 NA 25.00 9.09 27.27 26.67 33.33 NA 33.33 NA NA NA 23.53 16.67 25.00 45.45 50.00 NA 20.00 40.00 12.50 40.00 25.00 25.00 NA NA NA 20.00 NA NA 33.33 NA NA 28.57 NA NA NA NA 30.77 33.33 14.29 NA NA NA 20.00 27.27 NA 50.00 NA NA NA 16.67 33.33 NA NA K intron_retention RhoGAP71E,I_chr3L_15583097_15589765 chr3L + chr3L_15598381_15599758 chr3L_15598380_15598381;chr3L_15599758_15599759 chr3L_15598089_15598380;chr3L_15599759_15600439 93.75 93.75 94.12 83.33 92.86 86.67 100.00 96.00 97.22 NA 92.31 90.91 100.00 93.33 94.44 94.12 92.86 100.00 94.44 94.29 92.31 90.70 91.43 95.24 95.00 NA 94.12 96.55 100.00 80.00 94.12 92.86 93.02 96.00 90.91 81.82 93.02 87.50 96.88 96.00 87.50 87.50 100.00 95.24 85.71 90.91 80.00 95.83 90.00 100.00 96.00 85.71 94.12 93.33 100.00 93.33 91.67 95.45 K intron_retention E(bx),I_chr3L_240127_240176,I_chr3L_246324_246699 chr3L - chr3L_240127_240176 chr3L_240126_240127;chr3L_240176_240177 chr3L_240027_240126;chr3L_240177_240276 97.26 96.97 97.96 98.41 89.47 97.06 90.24 98.59 97.87 100.00 97.22 98.85 94.87 94.55 100.00 93.42 100.00 97.56 98.15 99.24 97.37 92.31 98.86 95.45 94.23 98.25 98.73 97.73 97.26 98.41 92.45 96.30 98.52 98.85 95.92 98.36 98.28 90.32 97.87 92.31 96.83 95.56 97.56 98.08 91.30 98.39 96.67 95.10 97.12 97.37 100.00 96.30 96.67 92.00 94.12 100.00 93.55 96.19 K alternative_donor kuk chr3R + chr3R_12906028_12908385 chr3R_12906079_12908385 chr3R_12908386_12908865;chr3R_12905959_12906027 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.41 97.22 94.74 98.31 97.22 100.00 100.00 98.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 98.18 100.00 100.00 97.73 99.15 100.00 100.00 100.00 100.00 96.92 100.00 100.00 100.00 98.39 100.00 97.14 100.00 96.97 100.00 100.00 100.00 100.00 100.00 K alternative_donor Sdc,I_chr2R_17286819_17367595,I_chr2R_17324594_17367595 chr2R - chr2R_17367884_17368584 chr2R_17367884_17368518 chr2R_17367596_17367883;chr2R_17368585_17368592 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 96.43 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CoRest,I_chrX_19416977_19417035 chrX + chrX_19416423_19417035 chrX_19416422_19416423;chrX_19417035_19417036 chrX_19416201_19416422;chrX_19417036_19417135 14.71 15.91 35.00 17.14 31.03 16.00 20.00 15.15 22.00 5.26 19.05 13.21 15.38 16.00 12.90 16.67 NA 14.29 8.70 19.35 29.17 25.00 16.67 14.04 12.12 14.71 14.29 11.11 11.76 12.50 20.00 0.00 18.18 15.00 13.16 9.09 9.33 13.43 15.00 12.86 NA 19.35 12.50 5.88 12.12 12.12 2.94 15.00 18.75 18.75 10.14 6.90 0.00 11.76 21.88 11.11 20.83 28.12 K jcn_only_AD Ptp4E,EI_chrX_4842231_4842425 chrX + chrX_4833364_4834454;chrX_4833234_4834454;chrX_4833203_4834454;chrX_4833338_4834454 chrX_4833308_4834454 chrX_4834455_4834880;chrX_4833197_4833202 4.55 NA 18.18 0.00 4.76 NA 2.08 4.88 4.55 12.50 NA 13.89 7.69 5.88 NA 3.12 3.12 NA 2.50 1.96 NA 0.00 NA NA NA NA NA NA NA 3.23 8.33 NA 3.39 4.55 NA NA NA NA NA NA NA 2.70 4.55 NA NA NA NA 0.00 15.56 NA NA NA NA NA 9.52 NA NA NA K jcn_only_AA dwg,RI_chrX_2622297_2622355,RI_chrX_2622297_2622430,RI_chrX_2622435_2622577,RI_chrX_2627170_2627263 chrX + chrX_2622297_2622355;chrX_2622297_2622430 chrX_2622297_2622577 chrX_2622197_2622296;chrX_2622578_2622677 81.82 81.48 89.36 73.91 92.31 90.24 62.96 91.23 82.61 72.97 83.33 89.16 73.33 95.00 87.23 81.82 80.00 73.33 84.44 85.57 75.00 23.68 87.30 69.23 79.55 77.78 74.19 83.67 78.95 75.00 42.86 82.50 72.58 86.79 81.82 64.10 77.94 75.00 83.13 80.00 82.22 82.28 80.00 73.68 84.48 84.62 84.78 91.30 82.05 80.39 73.61 NA 92.00 79.25 87.80 75.47 89.13 93.42 K alternative_last_exon noncoding_4495,CG30438 chr2R + chr2R_1384479_1414797 chr2R_1384479_1387136 chr2R_1414798_1414880 chr2R_1387137_1387329 chr2R_1384184_1384478 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N multi_cassette CG12090,I_chr3L_1525393_1526659 chr3L - chr3L_1525393_1526659 chr3L_1525393_1525641;chr3L_1525704_1526333;chr3L_1526399_1526659 chr3L_1525642_1525703;chr3L_1526334_1526398 chr3L_1525293_1525392;chr3L_1526660_1526731 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG12807 chr3R + chr3R_5825748_5825899 chr3R_5825747_5825748;chr3R_5825899_5825900 chr3R_5825620_5825747;chr3R_5825900_5826087 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 K intron_retention E(bx),I_chr3L_246324_246699 chr3L - chr3L_246324_246408 chr3L_246323_246324;chr3L_246408_246409 chr3L_246224_246323;chr3L_246409_246409 69.23 NA NA NA NA NA 90.91 66.67 59.09 NA NA 69.23 NA NA NA NA NA NA NA 64.71 NA NA 60.00 NA NA NA NA NA NA NA NA NA NA 72.73 NA NA 77.78 NA NA NA NA 90.91 NA NA NA NA NA 100.00 54.55 NA NA NA NA NA NA NA NA NA K alternative_donor I_chr3L_20306985_20307177,CG6680 chr3L + chr3L_20310517_20310578 chr3L_20310521_20310578 chr3L_20310579_20310888;chr3L_20310328_20310516 18.18 15.38 25.00 29.63 NA 20.00 19.23 26.83 18.64 NA NA 16.36 0.00 14.29 28.57 16.67 42.11 28.57 26.67 25.00 20.00 13.04 18.18 6.67 NA 36.36 35.00 NA 30.77 14.29 17.39 8.33 12.50 35.00 23.81 21.43 12.90 9.52 NA 13.95 22.73 30.77 42.11 15.38 21.05 10.42 6.25 15.38 20.63 11.76 14.29 9.09 26.32 13.33 28.57 16.67 6.76 9.52 K mutually_exclusive CG1674,I_chr4_253475_257020,F_chr4_258186_259747,F_chr4_259865_260939,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_254972_257894,chr4_258186_260939 chr4_254972_257020,chr4_257102_260939 chr4_257895_258185 chr4_257021_257101 chr4_254893_254971;chr4_260940_261024 10.00 0.00 33.33 0.00 28.57 40.00 15.38 0.00 6.67 NA 12.50 9.09 0.00 25.00 NA 12.50 NA 0.00 NA 0.00 0.00 0.00 40.00 10.00 16.67 NA NA NA 40.00 0.00 12.50 NA 0.00 14.29 NA NA 25.00 NA NA 0.00 NA 0.00 33.33 NA NA NA 0.00 16.67 0.00 0.00 NA 11.11 NA NA 0.00 16.67 12.50 NA K jcn_only_AD Trf4-1,I_chrX_8455293_8457185,RI_chrX_8455791_8457185,R_chrX_8455801_8457185,I_chrX_8455902_8457185,I_chrX_8459198_8459266 chrX + chrX_8455100_8457185;chrX_8454847_8457185 chrX_8454992_8457185 chrX_8457186_8457285;chrX_8454674_8454846 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 NA NA 0.00 4.00 0.00 0.00 5.88 0.00 4.00 0.00 0.00 3.85 NA 0.00 0.00 0.00 4.35 2.27 NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 7.41 NA 2.74 0.00 0.00 NA NA 4.55 NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA NA K intron_retention CG12703 chrX + chrX_19645580_19650462 chrX_19645579_19645580;chrX_19650462_19650463 chrX_19645381_19645579;chrX_19650463_19650575 0.00 0.00 0.90 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG8128,I_chrX_15591697_15591816 chrX + chrX_15591697_15591816;chrX_15591697_15592355 chrX_15591697_15592065 chrX_15591597_15591696;chrX_15592356_15592720 2.78 2.78 0.00 8.70 NA NA 16.00 5.13 0.00 NA NA 0.00 NA 8.33 0.00 7.69 5.00 0.00 4.76 3.51 4.00 NA 2.78 0.00 NA 12.50 2.78 0.00 0.00 0.00 7.41 3.70 5.13 2.94 NA 7.14 0.00 0.00 0.00 0.00 9.52 6.82 NA 0.00 NA 6.00 0.00 0.00 7.32 0.00 0.00 0.00 0.00 0.00 4.00 2.94 0.00 0.00 K alternative_acceptor gp210,I_chr2R_1653709_1654789,I_chr2R_1655359_1655422 chr2R + chr2R_1655359_1655422 chr2R_1655359_1655418 chr2R_1655259_1655358;chr2R_1655423_1655522 98.53 100.00 100.00 97.50 95.65 96.43 100.00 98.21 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 95.65 96.43 97.73 98.53 100.00 100.00 100.00 97.87 100.00 95.24 97.78 100.00 100.00 100.00 89.47 100.00 97.50 100.00 100.00 93.33 100.00 100.00 97.06 98.08 95.00 97.22 96.97 97.44 100.00 98.04 96.67 97.50 97.22 97.78 98.04 100.00 100.00 100.00 100.00 90.91 100.00 96.15 K jcn_only_AD CDase chr3R + chr3R_26286512_26288536;chr3R_26286617_26288536;chr3R_26286611_26288536;chr3R_26286613_26288536 chr3R_26286631_26288536 chr3R_26288537_26288691;chr3R_26286221_26286511 2.94 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.56 NA NA 0.00 2.94 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD I_chr2R_10059540_10059794,I_chr2R_10060189_10060261,cg,I_chr2R_10064197_10068715,I_chr2R_10068194_10068715 chr2R + chr2R_10065706_10065776;chr2R_10065709_10065776 chr2R_10065652_10065776 chr2R_10065777_10066101;chr2R_10065603_10065651 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.47 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.62 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.33 0.00 0.00 0.00 0.00 0.31 0.00 0.54 0.00 0.00 0.00 0.36 0.79 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5854,RI_chr3R_19760655_19760703 chr3R + chr3R_19760067_19760285 chr3R_19760066_19760067;chr3R_19760285_19760286 chr3R_19759893_19760066;chr3R_19760286_19760654 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.35 1.14 0.00 0.00 1.75 0.93 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 1.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 K intron_retention l(3)mbt,I_chr3R_23096096_23096561 chr3R - chr3R_23098664_23098732 chr3R_23098663_23098664;chr3R_23098732_23098733 chr3R_23098563_23098663;chr3R_23098733_23098931 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 22.73 NA 0.00 0.00 0.00 NA 7.14 NA 6.06 NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 6.67 NA NA 0.00 4.76 0.00 0.00 NA 0.00 0.00 NA 11.11 NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA 14.29 K alternative_donor svr,RI_chrX_421417_421591 chrX + chrX_401762_401901 chrX_401840_401901 chrX_401902_402566;chrX_400632_401761 100.00 100.00 100.00 95.24 100.00 100.00 94.44 95.83 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 93.33 93.33 96.43 100.00 93.75 100.00 96.30 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 96.15 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 93.75 100.00 94.44 100.00 100.00 100.00 100.00 K jcn_only_AA Tango2,RI_chrX_13543535_13546911,I_chrX_13544101_13544542 chrX + chrX_13511970_13512305 chrX_13511970_13512134 chrX_13511850_13511969;chrX_13512306_13512435 54.55 NA NA NA NA NA NA NA 36.00 NA NA NA NA NA NA NA NA NA NA 42.31 NA NA 54.55 59.46 NA NA NA NA NA 50.00 NA NA 64.71 NA 25.00 NA 58.54 NA 55.17 26.92 79.17 61.54 NA NA 60.00 58.06 NA 50.00 57.14 NA 26.09 NA NA 36.00 NA 42.31 NA NA K jcn_only_AD CG17508,RI_chr2R_1496995_1497120 chr2R + chr2R_1496288_1496517;chr2R_1496337_1496517;chr2R_1496341_1496517 chr2R_1496303_1496517 chr2R_1496518_1496994;chr2R_1496153_1496287 98.65 98.51 99.22 98.24 100.00 100.00 98.54 97.60 99.29 96.30 100.00 98.74 98.95 100.00 100.00 99.19 98.53 94.32 98.22 99.04 97.37 100.00 100.00 98.08 94.81 99.21 96.94 91.89 82.61 100.00 96.00 100.00 99.08 98.65 100.00 96.77 100.00 100.00 98.39 96.91 94.44 99.44 99.12 98.11 98.61 98.21 98.75 98.44 97.74 98.86 98.37 97.37 97.62 98.67 99.21 98.78 99.08 98.39 K jcn_only_AD R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8083458_8089184;chr2L_8083588_8089184;chr2L_8083637_8089184;chr2L_8083687_8089184 chr2L_8083522_8089184 chr2L_8089185_8089284;chr2L_8083444_8083457 80.86 NA 75.00 87.50 NA 70.83 83.13 80.68 86.96 50.00 NA 78.33 85.11 80.95 80.65 86.67 78.57 87.88 84.75 89.09 NA 83.33 80.77 NA NA 86.67 NA NA 67.74 NA 86.67 NA 55.56 89.47 NA 67.86 NA NA NA 60.61 81.58 81.48 75.56 77.27 NA 77.42 NA 76.06 82.28 NA NA NA NA NA 81.25 NA NA 64.44 K intron_retention RI_chr2R_13458667_13458738,Rab4,I_chr2R_13461027_13461136 chr2R + chr2R_13461370_13461439 chr2R_13461369_13461370;chr2R_13461439_13461440 chr2R_13461289_13461369;chr2R_13461440_13461772 0.00 1.69 0.00 6.67 0.00 0.00 3.81 1.83 0.00 0.00 0.00 1.03 0.00 1.72 0.00 0.00 3.08 0.00 2.78 2.88 0.00 0.00 1.23 0.00 6.12 2.50 8.86 7.02 3.28 0.00 1.98 0.00 0.00 0.94 0.00 0.00 2.17 0.00 0.00 0.00 4.55 0.82 0.00 0.00 0.00 0.00 2.78 0.00 0.69 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3R_19825840_19825904,Miro chr3R - chr3R_19860752_19860985 chr3R_19860751_19860752;chr3R_19860985_19860986 chr3R_19860087_19860751;chr3R_19860986_19861048 9.09 9.68 10.53 17.39 0.00 NA NA 16.67 13.33 NA NA 13.79 7.69 21.43 4.35 14.29 NA 0.00 NA 16.67 0.00 16.67 5.00 3.23 NA NA 8.33 0.00 8.33 25.93 NA 16.67 20.00 12.00 0.00 8.00 3.03 0.00 8.11 25.81 NA 4.88 NA 0.00 NA 9.09 4.44 31.25 15.62 10.53 11.11 18.18 0.00 3.70 25.00 8.82 6.67 35.71 K alternative_acceptor pcm chrX - chrX_19380372_19380437 chrX_19380375_19380437 chrX_19380438_19381100;chrX_19380294_19380371 25.95 26.67 33.33 21.43 33.33 NA 20.00 18.52 25.81 36.36 NA 17.86 25.00 NA 17.65 29.41 25.00 25.00 23.53 26.09 NA 27.78 22.22 28.57 15.38 NA 31.58 NA 33.33 22.22 40.00 36.84 27.03 21.05 22.73 33.33 33.33 30.00 13.51 30.30 30.00 18.18 NA 29.41 21.62 24.00 23.53 26.67 25.00 17.24 28.57 22.73 35.71 34.62 33.33 33.33 19.05 15.38 K jcn_only_AA Art4 chr3R - chr3R_5809714_5809778 chr3R_5809721_5809778 chr3R_5809779_5809847;chr3R_5809653_5809713 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.55 100.00 100.00 98.44 100.00 100.00 98.81 100.00 99.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor by,RI_chr3R_5373093_5377292 chr3R - chr3R_5354681_5356461 chr3R_5354681_5354979 chr3R_5354623_5354680;chr3R_5356462_5358734 7.69 8.33 6.67 5.41 3.70 12.50 14.71 10.00 9.09 5.56 4.76 7.32 26.32 4.76 6.90 15.00 5.56 20.00 7.69 16.67 11.76 7.69 9.09 5.26 7.14 17.65 9.52 25.00 15.79 11.11 4.17 9.09 4.00 11.43 5.88 20.00 2.86 5.26 3.12 6.25 5.56 7.02 9.52 11.54 4.00 3.85 4.76 3.85 13.16 3.70 11.76 5.26 11.11 5.00 11.11 5.00 11.11 8.33 K jcn_only_AA I_chr2L_114992_156735,RI_chr2L_114992_155545,RI_chr2L_114992_155566,I_chr2L_114992_155637,I_chr2L_114992_156175,RI_chr2L_155430_155637,CG11455,CG3436 chr2L + chr2L_155430_155493;chr2L_155430_155566 chr2L_155430_155637 chr2L_155424_155429;chr2L_155638_155645 2.25 1.75 2.50 15.38 7.32 1.56 3.23 2.34 2.21 0.00 2.44 2.19 0.00 1.43 4.21 2.08 0.00 3.39 2.41 3.12 0.00 NA 3.85 5.56 0.00 0.00 3.03 3.70 3.85 0.00 0.00 2.33 3.33 0.93 0.00 NA 1.41 2.70 0.00 1.67 NA 2.29 5.56 5.71 5.56 1.64 7.69 0.00 3.08 0.00 2.78 0.00 0.00 2.86 1.19 0.00 3.16 0.00 K intron_retention CG9149,CG2469,Myo61F chr3L + chr3L_1303494_1303547 chr3L_1303493_1303494;chr3L_1303547_1303548 chr3L_1303381_1303493;chr3L_1303548_1303977 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 3.64 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 1.82 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.23 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.34 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 K jcn_only_AD Cpsf160 chr2R - chr2R_10389967_10390140 chr2R_10389967_10390035 chr2R_10389403_10389966;chr2R_10390141_10390978 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.98 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 98.36 100.00 98.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.01 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 96.97 100.00 NA 100.00 100.00 NA 100.00 K intron_retention Cam,I_chr2R_8161049_8161270 chr2R + chr2R_8147694_8147780 chr2R_8147693_8147694;chr2R_8147780_8147781 chr2R_8147545_8147693;chr2R_8147781_8148319 2.78 NA NA NA NA NA NA NA 5.56 NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RI_chr3R_75576_75628,CG14644,I_chr3R_78474_78536 chr3R - chr3R_78537_78597 chr3R_78536_78537;chr3R_78597_78598 chr3R_78020_78536;chr3R_78598_78636 11.25 NA NA 45.00 NA NA NA NA 0.00 NA NA 10.00 NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG7262 chr3R - chr3R_10723557_10723609 chr3R_10723556_10723557;chr3R_10723609_10723610 chr3R_10722175_10723556;chr3R_10723610_10723790 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.41 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Tango13,I_chrX_13480088_13480998,I_chrX_13483861_13483954 chrX + chrX_13480088_13483954 chrX_13480088_13480998 chrX_13479988_13480087;chrX_13483955_13484054 0.79 0.00 0.00 0.71 3.03 1.08 0.00 1.92 2.39 1.17 0.00 0.00 3.28 1.18 0.79 2.33 0.00 27.50 0.00 0.93 1.82 3.86 0.88 0.61 0.88 0.00 0.00 0.00 2.11 0.00 0.92 1.22 0.50 1.94 2.40 0.80 0.38 0.58 0.44 0.54 0.00 2.55 2.56 0.00 2.38 0.00 0.00 0.64 1.11 0.00 1.62 0.00 0.00 0.00 1.82 0.00 3.70 0.98 K intron_retention Ddip2,I_chr3L_252776_253313 chr3L - chr3L_250614_250670 chr3L_250613_250614;chr3L_250670_250671 chr3L_250346_250613;chr3L_250671_250819 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 1.85 K jcn_only_AA CG2926,I_chr3R_1410841_1410893 chr3R - chr3R_1405758_1405836 chr3R_1405768_1405836 chr3R_1405837_1406027;chr3R_1405390_1405757 99.46 98.04 100.00 99.07 100.00 97.50 98.89 98.97 100.00 98.46 100.00 100.00 98.46 100.00 97.37 100.00 100.00 94.34 100.00 99.18 97.06 97.87 100.00 100.00 100.00 100.00 100.00 95.74 100.00 100.00 100.00 100.00 97.59 98.06 98.25 100.00 98.21 95.35 100.00 99.31 97.20 100.00 100.00 100.00 99.02 99.26 100.00 99.46 97.89 96.61 100.00 100.00 97.37 98.00 98.67 100.00 96.83 100.00 K multi_cassette CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2436229_2459590 chr3L_2436229_2439498;chr3L_2439831_2442435;chr3L_2442961_2443389;chr3L_2443839_2443987;chr3L_2444088_2444498;chr3L_2446102_2459590 chr3L_2439499_2439830;chr3L_2442436_2442960;chr3L_2443390_2443838;chr3L_2443988_2444087;chr3L_2444499_2446101 chr3L_2436209_2436228;chr3L_2459591_2459690 100.00 100.00 92.31 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 95.65 90.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 95.00 100.00 100.00 97.92 100.00 95.45 100.00 100.00 100.00 100.00 94.12 96.00 97.37 94.44 96.67 96.67 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 95.65 100.00 100.00 100.00 100.00 93.33 100.00 100.00 K intron_retention vsg,I_chr3L_9707724_9708265 chr3L + chr3L_9707496_9707605 chr3L_9707495_9707496;chr3L_9707605_9707606 chr3L_9707406_9707495;chr3L_9707606_9707723 70.83 58.82 67.65 60.00 52.00 64.00 76.79 55.74 60.00 75.00 70.83 63.93 62.50 57.89 62.96 66.67 47.83 73.08 63.89 76.00 75.00 84.00 68.18 72.73 70.59 58.82 91.11 88.24 94.78 69.23 72.55 83.87 58.06 61.36 61.90 87.80 66.67 83.33 80.00 66.67 83.33 59.09 61.54 78.95 71.43 84.09 78.95 82.61 69.01 73.33 77.27 72.73 64.71 90.91 56.52 70.83 77.78 87.50 N intron_retention RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817,snoRNA:Psi28S-2444 chr2R + chr2R_15330604_15330664 chr2R_15330603_15330604;chr2R_15330664_15330665 chr2R_15330318_15330603;chr2R_15330665_15330670 42.93 46.15 NA 100.00 NA 46.67 53.85 32.00 48.15 NA NA 50.00 33.33 NA NA 100.00 NA NA 41.67 51.43 NA 46.77 100.00 30.00 NA NA 42.11 100.00 40.54 36.84 42.11 NA 40.00 43.75 42.11 30.00 40.62 35.71 44.12 34.29 100.00 52.00 NA 34.78 100.00 35.48 25.93 NA 36.36 45.45 51.72 NA 38.46 38.89 46.67 39.13 50.00 100.00 K alternative_donor CG6695 chr3R + chr3R_20483336_20484042;chr3R_20483291_20484042 chr3R_20483332_20484042 chr3R_20484043_20484133;chr3R_20483238_20483290 74.19 79.17 76.47 85.19 75.00 73.33 80.00 75.00 73.17 78.57 77.78 72.41 76.92 73.33 75.00 66.67 69.23 72.22 76.92 82.05 80.00 69.23 82.86 62.50 64.29 69.23 82.61 57.14 85.00 73.68 44.44 62.50 73.17 80.00 80.00 76.19 78.05 81.82 65.71 69.44 72.73 68.29 83.33 60.61 75.00 64.71 71.43 66.67 80.00 77.14 76.92 71.43 75.86 66.67 84.21 68.75 74.19 73.33 K intron_retention CycB,I_chr2R_18692089_18692164 chr2R - chr2R_18693070_18693171 chr2R_18693069_18693070;chr2R_18693171_18693172 chr2R_18692165_18693069;chr2R_18693172_18693380 0.00 0.00 0.00 2.04 0.00 0.00 0.00 3.42 3.11 0.00 0.00 1.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 2.03 0.00 1.32 0.00 0.00 0.00 0.00 4.90 0.00 0.00 0.00 0.00 0.00 0.00 1.53 0.00 0.00 0.00 0.00 0.83 3.94 1.61 1.17 0.00 1.89 0.00 2.53 1.19 0.00 2.42 2.17 2.96 0.00 0.00 0.00 0.00 0.00 0.00 2.27 K alternative_acceptor CG7332,I_chrX_18779996_18780073,RI_chrX_18780777_18780878 chrX + chrX_18780777_18780878 chrX_18780777_18780868 chrX_18780677_18780776;chrX_18780879_18780879 94.74 100.00 94.12 100.00 92.31 92.86 100.00 96.43 96.55 NA 91.67 100.00 88.89 92.86 95.45 92.86 91.67 92.31 100.00 96.88 90.00 93.33 96.00 100.00 90.00 100.00 94.74 NA 86.67 100.00 92.86 100.00 100.00 100.00 94.12 90.91 94.74 92.31 95.24 95.83 88.89 96.55 100.00 100.00 100.00 90.91 91.67 100.00 95.45 92.86 94.44 100.00 93.33 90.00 100.00 94.44 86.67 100.00 K jcn_only_AD CG10959,I_chrX_8043524_8043577,I_chrX_8043625_8043682 chrX + chrX_8043510_8043577 chrX_8043524_8043577 chrX_8043578_8043624;chrX_8043424_8043509 4.35 NA NA 4.76 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA 8.33 4.35 NA 7.41 NA NA NA NA NA NA NA NA NA 0.00 K jcn_only_AD Aldh-III,RE_chr2R_3355332_3355720,I_chr2R_3356541_3356614,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3354822_3354987 chr2R_3354822_3354978 chr2R_3354726_3354821;chr2R_3354988_3355138 16.37 16.03 14.39 15.50 11.90 17.91 16.96 23.08 20.55 16.67 9.68 19.41 23.08 19.01 17.83 12.50 21.38 17.28 15.08 14.49 13.40 20.00 14.04 13.53 10.57 20.65 15.53 21.54 19.05 17.91 21.92 14.17 13.39 17.77 14.94 25.60 14.16 11.98 17.93 11.94 9.30 16.37 21.37 17.65 16.45 12.30 11.03 18.60 12.92 13.12 14.63 20.81 20.55 14.14 19.72 17.33 16.16 15.46 K alternative_acceptor CG31158,CI_chr3R_18432763_18433113,CG31159 chr3R + chr3R_18433031_18433113 chr3R_18433031_18433110 chr3R_18432919_18433030;chr3R_18433114_18433213 16.22 16.22 16.67 13.46 NA 40.91 14.63 20.37 16.92 11.54 NA 20.00 NA 29.17 26.67 12.50 50.00 28.57 21.05 13.41 NA 16.22 15.22 11.54 10.71 36.36 13.95 22.22 10.81 21.05 25.00 14.29 14.29 22.92 16.67 16.67 11.76 16.22 12.77 15.62 13.79 11.69 28.57 4.88 19.23 15.00 11.63 13.16 20.00 14.81 18.18 14.29 16.67 10.71 26.32 9.52 18.42 19.57 K jcn_only_AA fwd,RI_chr3L_319514_319746 chr3L - chr3L_314318_319746 chr3L_319514_319746 chr3L_319747_319846 8.33 10.00 NA 0.00 NA NA 9.52 7.14 10.26 10.00 NA 21.21 NA NA NA 4.55 NA NA 4.17 7.89 NA NA 2.63 NA NA NA 8.33 NA NA 12.50 9.38 NA 6.25 10.81 4.35 NA 9.09 0.00 NA 13.33 NA 12.90 NA 9.68 NA NA NA NA 7.32 NA 8.00 NA NA NA 4.17 NA NA NA K jcn_only_AD sut1,I_chr2R_3970908_3972035,sut2 chr2R + chr2R_3970891_3972035 chr2R_3970908_3972035 chr2R_3972036_3972135;chr2R_3970808_3970890 0.00 0.00 1.43 0.00 0.00 1.59 0.00 2.02 0.00 0.00 1.39 1.59 1.25 0.00 0.00 0.00 1.35 2.35 0.00 0.00 0.00 0.00 0.82 0.00 0.00 1.33 2.06 0.00 0.00 0.00 7.41 2.94 1.22 0.00 0.00 1.69 0.00 0.00 0.93 1.74 0.00 1.96 0.00 0.00 0.00 0.00 1.47 1.82 0.00 2.44 0.00 0.00 1.11 0.00 2.38 1.19 0.00 0.00 K alternative_donor Mtch,RI_chr3L_184729_185366,I_chr3L_185367_185925 chr3L + chr3L_184670_184777;chr3L_184663_184777 chr3L_184682_184777 chr3L_184778_184854;chr3L_184654_184662 62.50 NA 66.67 70.00 NA 42.86 62.50 50.00 72.73 NA NA 62.50 NA 80.00 NA 57.14 66.67 57.14 50.00 58.33 NA NA NA NA NA NA NA NA NA NA 50.00 NA NA 58.33 NA NA NA NA NA 66.67 NA 61.54 NA NA NA NA NA 77.78 63.64 NA NA NA NA NA 63.64 NA NA 72.73 K intron_retention I_chr2R_9844856_9845327,CG13349,RI_chr2R_9846641_9846709 chr2R - chr2R_9846904_9847072 chr2R_9846903_9846904;chr2R_9847072_9847073 chr2R_9846710_9846903;chr2R_9847073_9847606 2.67 1.53 3.49 4.90 2.30 2.78 4.29 4.44 3.12 3.66 5.68 2.67 0.00 3.70 1.67 10.20 1.11 0.00 2.90 2.96 0.00 2.76 2.35 3.75 1.09 3.30 3.61 3.96 3.03 0.85 4.44 1.57 1.12 5.26 3.66 3.85 1.63 0.00 1.10 1.66 4.24 3.06 1.69 1.00 1.75 3.52 1.48 1.99 2.44 0.90 2.63 5.26 2.91 2.27 0.00 0.00 1.48 3.42 K intron_retention Set2 chrX + chrX_13308929_13309075 chrX_13308928_13308929;chrX_13309075_13309076 chrX_13307346_13308928;chrX_13309076_13309093 96.43 100.00 95.83 90.91 93.75 100.00 90.62 97.67 98.39 96.15 92.86 93.62 95.83 100.00 95.00 100.00 100.00 92.31 92.86 98.31 100.00 76.67 93.94 95.24 100.00 94.44 100.00 100.00 94.74 88.89 96.77 100.00 92.59 100.00 100.00 100.00 96.55 100.00 96.43 96.72 95.65 95.83 100.00 100.00 93.75 92.86 93.33 96.00 91.67 93.75 96.43 100.00 100.00 100.00 100.00 100.00 100.00 95.35 K intron_retention Sema-1b,RI_chr2R_13565425_13565874 chr2R - chr2R_13564099_13565330 chr2R_13564098_13564099;chr2R_13565330_13565331 chr2R_13563416_13564098;chr2R_13565331_13565424 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 NA K intron_retention cv-2 chr2R - chr2R_17245592_17246321 chr2R_17245591_17245592;chr2R_17246321_17246322 chr2R_17245379_17245591;chr2R_17246322_17246504 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 NA 2.53 2.27 0.00 0.00 NA 0.00 4.44 1.68 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA K intron_retention NijA chr3L - chr3L_10687827_10688123 chr3L_10687826_10687827;chr3L_10688123_10688124 chr3L_10687458_10687826;chr3L_10688124_10688467 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.17 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor tws,I_chr3R_5960899_5960978,CG6241 chr3R - chr3R_5959310_5960163;chr3R_5959310_5960101;chr3R_5959310_5960041;chr3R_5959310_5959789;chr3R_5959310_5960049;chr3R_5959310_5960026;chr3R_5959310_5960158;chr3R_5959310_5959679 chr3R_5959310_5960182 chr3R_5958937_5959309;chr3R_5960183_5960224 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17883,I_chr2R_560147_560511,I_chr2R_560547_560618 chr2R + chr2R_560568_560618 chr2R_560567_560568;chr2R_560618_560619 chr2R_560512_560567;chr2R_560619_560642 23.53 16.67 NA 54.55 NA 13.33 15.87 18.42 30.19 NA NA 22.58 16.00 50.00 21.43 42.11 18.18 21.43 26.09 9.52 NA 15.00 35.00 23.53 41.67 NA NA 30.77 NA 11.76 30.77 33.33 NA 27.27 21.43 NA 54.55 NA NA 20.83 NA 20.00 30.00 35.71 NA 28.57 21.05 38.46 23.08 50.00 35.29 28.57 20.00 7.69 NA 25.00 23.53 22.22 K multi_cassette Nedd4,I_chr3L_17534127_17534409,I_chr3L_17534504_17535990,I_chr3L_17535485_17536604,I_chr3L_17536186_17536604,I_chr3L_17536713_17536777,I_chr3L_17536813_17536863 chr3L + chr3L_17534504_17536863 chr3L_17534504_17535299;chr3L_17535485_17535689;chr3L_17535913_17536604;chr3L_17536713_17536863 chr3L_17535300_17535484;chr3L_17535690_17535912;chr3L_17536605_17536712 chr3L_17534419_17534503;chr3L_17536864_17536877 83.33 80.00 75.00 43.75 75.00 75.00 30.77 90.91 100.00 NA 100.00 100.00 100.00 80.00 83.33 100.00 NA 66.67 75.00 75.00 83.33 NA 100.00 75.00 80.00 100.00 66.67 NA 66.67 75.00 100.00 NA 100.00 80.00 100.00 100.00 80.00 100.00 57.14 100.00 75.00 83.33 100.00 100.00 100.00 100.00 66.67 100.00 71.43 NA 100.00 75.00 100.00 66.67 100.00 100.00 100.00 80.00 K intron_retention CG11504 chr3R + chr3R_25823929_25823996 chr3R_25823928_25823929;chr3R_25823996_25823997 chr3R_25823519_25823928;chr3R_25823997_25825464 95.24 100.00 100.00 94.44 NA 100.00 NA 100.00 95.00 88.89 100.00 93.75 NA NA 100.00 100.00 NA 100.00 NA 95.00 88.89 100.00 100.00 100.00 94.12 90.91 95.24 100.00 86.36 90.91 87.50 100.00 93.75 100.00 100.00 88.89 95.24 91.67 93.33 100.00 100.00 94.74 NA 100.00 100.00 90.91 90.00 100.00 84.62 95.00 100.00 100.00 88.89 100.00 90.00 90.00 93.75 100.00 K alternative_acceptor Nop60B,RI_chr2R_20063248_20063455,I_chr2R_20063248_20063949,F_chr2R_20073291_20073744 chr2R + chr2R_20063248_20063455 chr2R_20063248_20063439 chr2R_20063148_20063247;chr2R_20063456_20063555 98.17 98.06 95.39 97.81 97.06 97.14 98.75 98.89 96.17 99.09 96.61 97.69 99.19 98.17 98.77 98.18 99.20 94.44 97.66 97.25 96.03 99.53 97.79 98.60 99.25 97.98 98.85 100.00 98.39 97.42 79.56 97.92 99.53 97.75 97.06 98.92 98.17 98.83 98.77 98.44 97.64 96.74 99.10 98.37 95.03 98.20 99.08 98.52 97.37 98.97 98.37 98.17 98.36 98.24 97.50 97.84 97.68 97.51 K intron_retention Pi4KIIalpha chr3R - chr3R_1384024_1384088 chr3R_1384023_1384024;chr3R_1384088_1384089 chr3R_1383872_1384023;chr3R_1384089_1384157 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 7.27 0.00 0.00 7.84 10.34 10.94 8.80 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 3.01 0.00 0.00 0.00 1.40 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 K alternative_donor Dbp45A chr2R + chr2R_4975487_4975546 chr2R_4975492_4975546 chr2R_4975547_4976088;chr2R_4975391_4975486 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 93.75 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 96.00 100.00 100.00 96.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette fwd,I_chr3L_310787_310918,RI_chr3L_319514_319746 chr3L - chr3L_310787_313023 chr3L_310787_311173;chr3L_311286_313023 chr3L_311174_311285 chr3L_310687_310786;chr3L_313024_313474 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.92 100.00 100.00 100.00 100.00 100.00 98.04 100.00 100.00 100.00 98.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Aldolase,I_chr3R_22083764_22086684,I_chr3R_22086804_22086875 chr3R - chr3R_22083764_22085523 chr3R_22083763_22083764;chr3R_22085523_22085524 chr3R_22083664_22083763;chr3R_22085524_22085590 4.38 7.50 4.69 3.45 5.68 5.26 14.49 5.10 5.64 3.88 4.46 4.03 2.47 6.00 3.70 3.70 8.45 4.21 4.72 3.08 5.00 2.93 87.50 NA NA 3.53 57.14 9.27 4.30 2.15 5.68 1.97 0.75 5.84 4.08 4.88 NA NA NA 4.87 3.37 4.48 4.29 3.77 1.02 2.63 NA 2.18 8.59 NA NA NA 6.25 NA 2.94 NA 50.00 0.60 K intron_retention CG1553 chr2R - chr2R_3689074_3689490 chr2R_3689073_3689074;chr2R_3689490_3689491 chr2R_3688286_3689073;chr2R_3689491_3689623 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 3.64 0.00 0.00 5.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 3.77 2.86 0.00 0.00 6.06 0.00 0.00 6.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 3.57 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 2.38 0.00 0.00 4.88 0.00 0.00 0.00 K alternative_acceptor CG11448,I_chrX_1288748_1289115,RI_chrX_1289405_1289590 chrX + chrX_1289405_1289590 chrX_1289405_1289585 chrX_1289305_1289404;chrX_1289591_1289690 93.09 NA NA NA NA NA 100.00 93.33 100.00 100.00 NA 91.67 NA NA NA 100.00 NA NA NA 100.00 NA 85.71 100.00 87.50 NA NA 87.50 NA 100.00 90.91 NA 91.67 95.65 100.00 88.89 100.00 90.91 NA NA 92.86 100.00 85.71 NA 92.31 92.31 100.00 NA 96.00 92.31 100.00 100.00 87.50 NA NA NA 88.89 NA 85.71 K intron_retention CG11357,C_chr3L_4563905_4578759 chr3L + chr3L_4549838_4551001 chr3L_4549837_4549838;chr3L_4551001_4551002 chr3L_4549769_4549837;chr3L_4551002_4551938 100.00 NA NA 100.00 NA NA 100.00 88.89 92.86 NA 100.00 92.31 NA NA NA 92.31 NA 93.75 NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 NA NA NA NA 90.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9905053_9905137 chr2L_9905084_9905137 chr2L_9905138_9905241;chr2L_9904827_9905052 35.48 35.48 28.57 60.00 50.00 39.13 76.92 52.00 45.24 41.67 60.00 16.67 66.67 38.89 29.17 53.33 40.00 26.92 39.13 32.50 44.44 12.61 44.44 44.44 52.17 58.82 35.00 31.82 26.42 31.03 42.11 23.33 26.83 32.26 33.33 53.57 43.75 33.33 30.95 24.07 39.29 40.48 31.58 25.53 17.39 31.48 25.81 12.50 29.63 39.39 39.13 41.18 31.25 32.14 45.16 30.00 46.43 19.51 K alternative_donor Anxb11,I_chrX_16314152_16314405,I_chrX_16314152_16315813 chrX - chrX_16314152_16316276;chrX_16314152_16316199 chrX_16314152_16316028 chrX_16314083_16314151;chrX_16316277_16316298 57.98 37.50 66.67 73.33 33.33 71.43 64.71 65.00 52.94 NA 40.00 80.77 41.67 77.78 60.00 58.82 57.14 44.44 77.78 75.00 37.50 35.71 62.50 50.00 75.00 71.43 50.00 NA 50.00 80.00 50.00 40.00 66.67 52.38 71.43 62.50 37.50 NA 42.86 63.64 NA 53.33 71.43 53.85 75.00 50.00 40.00 57.14 56.52 80.00 63.64 66.67 60.00 NA 53.85 60.00 33.33 54.55 K jcn_only_AD CG13865,I_chrX_22415456_22415654,RI_chrX_22415518_22416288 chrX + chrX_22415456_22415654 chrX_22415518_22415654 chrX_22415655_22415754;chrX_22415418_22415455 100.00 100.00 100.00 99.08 100.00 100.00 100.00 100.00 98.80 100.00 100.00 100.00 100.00 100.00 98.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.48 100.00 100.00 100.00 100.00 100.00 98.61 100.00 98.75 99.37 99.22 100.00 100.00 100.00 100.00 100.00 100.00 98.75 100.00 100.00 100.00 100.00 98.67 98.28 98.98 99.19 100.00 100.00 100.00 100.00 100.00 98.99 100.00 98.72 100.00 N alternative_donor CG32594 chrX + chrX_14927496_14927638;chrX_14927033_14927638;chrX_14926607_14927638 chrX_14927381_14927638 chrX_14927639_14928125;chrX_14925576_14926606 5.59 5.26 5.08 11.64 4.58 5.62 4.97 11.39 7.47 2.78 10.69 8.88 3.64 9.18 5.59 16.30 4.58 5.47 7.69 7.04 7.19 9.60 6.22 5.50 4.42 2.99 8.51 10.68 13.25 2.33 3.77 6.12 6.28 6.25 6.98 5.63 4.55 4.92 4.62 7.63 4.61 7.31 5.98 6.11 3.72 4.67 5.26 4.29 7.85 4.83 8.26 5.26 4.44 4.35 4.21 6.13 4.85 1.68 K alternative_donor CG7203,Rack1,RI_chr2L_7826337_7826533 chr2L - chr2L_7826337_7826769 chr2L_7826337_7826533 chr2L_7826237_7826336;chr2L_7826770_7826981 1.71 0.95 1.38 1.46 1.00 1.21 1.41 1.71 1.10 2.08 0.75 1.30 1.31 1.84 1.28 2.97 1.26 1.59 1.97 1.05 1.08 2.70 1.86 1.75 1.68 2.33 1.70 3.23 2.62 2.33 7.54 2.61 1.92 0.80 2.06 1.54 1.33 1.38 0.99 1.85 1.85 1.22 1.47 2.29 1.78 2.47 1.39 4.23 2.82 2.29 2.34 2.41 1.24 1.46 1.62 2.00 3.45 3.52 K alternative_donor CG7530,I_chr3R_10556352_10557136,eff chr3R - chr3R_10556352_10557105;chr3R_10556352_10557130;chr3R_10556352_10557148;chr3R_10556352_10557126 chr3R_10556352_10557198 chr3R_10556252_10556351;chr3R_10557199_10557231 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 1.06 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.98 K cassette alpha-Spec chr3L - chr3L_1783683_1784906 chr3L_1783683_1784502;chr3L_1784599_1784906 chr3L_1784503_1784598 chr3L_1781759_1783682;chr3L_1784907_1788957 0.72 0.66 0.38 0.87 0.00 0.54 0.37 0.64 0.52 1.46 0.00 1.69 0.61 0.43 0.37 0.41 0.00 0.41 0.00 2.10 0.00 1.16 1.17 0.99 1.49 1.49 0.33 0.95 1.63 0.77 0.76 1.48 0.86 0.25 0.72 3.27 1.00 0.58 0.80 0.59 1.73 0.36 0.49 1.53 0.85 1.18 0.33 1.01 0.60 0.64 0.46 0.00 0.99 0.95 0.69 0.72 1.18 1.28 K intron_retention RpI1,REFI_chr2R_10491644_10491701 chr2R - chr2R_10483892_10483948 chr2R_10483891_10483892;chr2R_10483948_10483949 chr2R_10483120_10483891;chr2R_10483949_10484048 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 2.22 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17660 chr2L - chr2L_1709333_1709616 chr2L_1709332_1709333;chr2L_1709616_1709617 chr2L_1709174_1709332;chr2L_1709617_1709805 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 1.05 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 K intron_retention Vps13,I_chr2R_3464510_3464571 chr2R + chr2R_3457159_3457214 chr2R_3457158_3457159;chr2R_3457214_3457215 chr2R_3456805_3457158;chr2R_3457215_3457436 0.00 0.00 0.00 9.09 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K alternative_donor CG4822,I_chr2L_120081_120199,I_chr2L_120266_120420,I_chr2L_125267_128799,RI_chr2L_126228_126309 chr2L - chr2L_120081_120199 chr2L_120081_120167 chr2L_119981_120080;chr2L_120200_120265 90.57 90.91 91.30 90.24 91.67 88.89 89.74 92.16 86.54 90.91 100.00 93.55 95.00 91.67 80.00 85.71 95.83 92.86 91.89 91.67 93.75 91.30 76.47 95.00 83.33 80.00 80.00 91.67 90.00 71.43 85.71 92.86 94.44 87.50 88.89 83.33 75.00 82.35 93.75 73.53 84.62 91.67 95.83 83.33 92.86 88.24 85.71 84.00 92.86 95.65 80.00 92.00 NA 90.00 95.65 81.25 92.31 78.57 K alternative_donor kuz,E_chr2L_13550294_13551106,I_chr2L_13550421_13550984,CE_chr2L_13558833_13594255,I_chr2L_13636762_13637287 chr2L + chr2L_13550294_13551141 chr2L_13550421_13551141 chr2L_13551142_13551156;chr2L_13550287_13550293 63.33 73.68 66.67 57.89 90.91 51.72 63.41 74.00 73.91 76.47 73.33 46.91 58.06 54.76 61.76 56.25 73.33 56.52 55.56 44.07 72.73 67.86 73.33 65.00 50.00 45.95 63.64 69.23 62.86 60.87 38.24 46.15 66.67 76.09 46.88 68.00 85.71 72.73 90.00 45.45 61.11 66.00 62.50 70.83 54.55 54.17 NA 63.33 49.37 66.67 70.83 78.57 31.25 NA 50.00 55.56 85.71 62.50 K multi_cassette CG11266,RI_chr2L_7033019_7034180,RI_chr2L_7033019_7034764,I_chr2L_7034274_7034764,I_chr2L_7034274_7035406,RI_chr2L_7034911_7035074,I_chr2L_7051093_7051366 chr2L + chr2L_7034274_7035406 chr2L_7034274_7034483;chr2L_7034694_7034764;chr2L_7034913_7035406 chr2L_7034484_7034693;chr2L_7034765_7034912 chr2L_7034211_7034273;chr2L_7035407_7035506 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 75.00 100.00 100.00 75.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K intron_retention CG42394,noncoding_15936,E_chr3R_6675742_6676058 chr3R + chr3R_6677211_6677270 chr3R_6677210_6677211;chr3R_6677270_6677271 chr3R_6677007_6677210;chr3R_6677271_6677430 26.03 20.31 29.87 38.76 28.00 28.57 29.22 25.13 34.81 12.50 13.64 25.95 16.18 28.69 26.03 30.88 30.59 24.00 30.36 24.44 17.07 12.24 39.71 20.24 47.37 42.25 28.92 36.00 38.60 12.90 24.04 26.37 18.09 28.76 28.17 40.38 21.95 31.25 16.00 18.18 39.62 28.46 30.14 26.44 22.99 23.03 15.66 24.39 32.85 31.11 19.51 27.45 18.00 21.18 25.64 20.29 24.32 20.00 K alternative_acceptor Mpk2,I_chr3R_19977468_19977530,F_chr3R_19985127_19985197 chr3R - chr3R_19977468_19977567 chr3R_19977492_19977567 chr3R_19977568_19977630;chr3R_19977368_19977467 5.72 0.00 7.69 6.67 NA NA 4.76 5.41 3.12 NA 10.53 6.90 5.88 NA 5.00 5.56 5.56 0.00 8.33 8.89 0.00 3.45 16.67 12.00 0.00 5.00 3.70 26.32 19.05 0.00 3.45 4.55 9.38 6.90 0.00 14.29 8.33 NA 8.33 5.26 12.50 8.57 NA 8.33 10.00 7.32 4.76 13.79 11.43 20.00 3.57 0.00 5.56 NA 4.35 3.85 0.00 16.22 K alternative_donor d4 chr2R + chr2R_1182569_1182620;chr2R_1182573_1182620;chr2R_1182566_1182620 chr2R_1182563_1182620 chr2R_1182621_1183461;chr2R_1182302_1182562 54.35 56.10 65.22 58.21 53.66 60.53 55.74 55.56 54.37 38.89 58.97 41.18 50.00 53.12 59.46 54.55 58.33 48.28 45.16 59.62 52.94 61.22 51.06 50.00 43.75 65.52 52.83 53.85 59.62 55.00 41.38 52.27 53.33 56.00 52.00 58.82 50.00 58.97 54.00 47.69 53.66 54.29 57.14 68.09 51.72 47.83 62.00 41.18 55.00 57.89 54.35 50.00 58.18 51.28 57.50 55.56 58.82 44.59 K intron_retention Mtch,RI_chr3L_184729_185366,I_chr3L_185367_185925 chr3L + chr3L_184855_184934 chr3L_184854_184855;chr3L_184934_184935 chr3L_184778_184854;chr3L_184935_185000 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 99.25 98.95 100.00 100.00 100.00 100.00 100.00 100.00 98.92 100.00 99.22 100.00 99.31 99.36 100.00 99.45 100.00 98.92 100.00 100.00 100.00 100.00 99.32 100.00 100.00 100.00 100.00 100.00 99.06 99.08 100.00 99.01 K intron_retention CG7967,I_chr3L_1652265_1652330,I_chr3L_1659363_1659845,I_chr3L_1667736_1667806 chr3L - chr3L_1652629_1652689 chr3L_1652628_1652629;chr3L_1652689_1652690 chr3L_1652567_1652628;chr3L_1652690_1652863 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Ddip2,I_chr3L_252776_253313 chr3L - chr3L_256591_256648 chr3L_256594_256648 chr3L_256649_256793;chr3L_256214_256590 92.59 96.97 93.62 95.24 94.44 95.65 90.91 91.55 86.21 100.00 96.15 82.61 88.00 100.00 96.88 97.22 96.55 92.68 91.84 95.15 85.71 93.67 92.19 94.44 82.14 91.43 93.02 95.65 90.32 92.86 91.23 NA 94.12 91.94 88.89 97.96 95.45 84.62 94.00 92.54 87.50 92.63 96.77 89.47 NA 91.30 91.30 86.67 91.78 NA 95.24 90.48 NA NA 90.00 NA NA 77.27 K alternative_acceptor CG3760,CG3770,CG12851 chr2R + chr2R_20826366_20826496 chr2R_20826366_20826478 chr2R_20826283_20826365;chr2R_20826497_20826740 19.35 14.40 18.44 33.64 15.22 16.41 30.59 10.14 18.48 22.89 23.30 20.74 23.29 17.70 11.81 19.57 20.93 14.53 22.45 13.44 23.86 19.35 22.46 19.30 28.57 23.66 13.01 18.67 24.55 18.94 13.97 19.66 22.05 17.50 20.95 57.14 15.69 21.95 20.65 19.53 28.48 18.89 16.28 8.89 21.46 18.83 20.00 20.65 22.49 18.29 23.48 19.74 17.65 17.95 18.44 16.33 16.56 16.42 K intron_retention CG12946,noncoding_15730,I_chr3R_5599701_5600032,I_chr3R_5609682_5609889 chr3R - chr3R_5599358_5600041 chr3R_5599357_5599358;chr3R_5600041_5600042 chr3R_5599286_5599357;chr3R_5600042_5600132 81.82 NA 70.00 75.00 NA 88.89 73.33 81.82 72.73 87.50 NA 86.36 NA NA 91.67 90.91 87.50 NA 66.67 78.26 70.00 NA 90.91 72.73 NA 81.82 76.47 88.89 100.00 93.33 90.00 80.00 94.44 91.67 NA 91.67 65.22 69.23 77.78 79.17 71.43 77.27 NA NA 90.00 90.00 87.50 70.97 78.95 NA 87.50 NA NA NA 88.89 77.78 NA 100.00 K jcn_only_AD mbf1,RI_chr3L_16567888_16567952,RI_chr3L_16568077_16568816 chr3L + chr3L_16567888_16567952;chr3L_16567853_16567952 chr3L_16567770_16567952 chr3L_16567953_16568052;chr3L_16567701_16567769 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.51 0.00 0.00 0.00 0.00 0.20 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chrX_14642093_14642682,CG15890 chrX - chrX_14652369_14652429 chrX_14652368_14652369;chrX_14652429_14652430 chrX_14651559_14652368;chrX_14652430_14653170 88.44 80.95 100.00 NA 80.00 90.00 95.00 84.62 96.97 NA NA 100.00 84.62 93.33 92.86 93.75 90.91 83.33 91.67 80.56 88.89 79.31 84.21 82.61 81.82 NA 89.47 76.47 75.00 87.50 93.75 NA 91.67 95.45 NA 94.12 92.31 68.75 88.00 90.48 81.82 83.33 90.00 82.61 73.33 81.25 73.91 NA 95.24 68.75 80.77 91.67 86.21 90.00 93.33 95.00 82.35 89.47 K intron_retention CG32549,I_chrX_18286289_18286367,RI_chrX_18301919_18303082 chrX - chrX_18284966_18285030 chrX_18284965_18284966;chrX_18285030_18285031 chrX_18284544_18284965;chrX_18285031_18285999 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 1.08 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 1.45 0.84 0.00 0.00 0.00 0.60 0.27 0.00 0.54 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.31 0.00 0.00 0.00 K alternative_donor Pdi,RE_chr3L_15131606_15135404,I_chr3L_15132625_15133292 chr3L - chr3L_15132625_15135399 chr3L_15132625_15133292 chr3L_15132525_15132624;chr3L_15135400_15135940 0.20 0.09 0.19 0.19 0.12 0.12 0.42 0.29 0.20 0.24 0.19 0.17 0.27 0.28 0.17 0.47 0.25 0.23 0.20 0.20 0.10 0.25 0.21 0.27 0.25 0.11 0.43 1.18 0.23 0.18 0.23 0.12 0.10 0.23 0.20 0.16 0.31 0.22 0.11 0.21 0.07 0.20 0.27 0.19 0.15 0.14 0.13 0.06 0.19 0.27 0.22 0.46 0.16 0.11 0.18 0.12 0.15 0.14 K intron_retention CG8709,I_chr2R_4027128_4027182,I_chr2R_4027682_4027747,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4027877_4028018 chr2R_4027876_4027877;chr2R_4028018_4028019 chr2R_4027748_4027876;chr2R_4028019_4028118 6.54 3.64 10.42 10.14 4.55 6.56 9.46 6.98 3.15 6.00 4.88 6.54 0.00 6.82 7.41 4.94 6.38 9.43 4.35 4.48 16.67 9.84 11.25 6.98 10.42 18.75 12.20 12.24 9.90 6.58 6.90 6.90 7.25 4.88 0.00 7.27 3.88 7.27 3.85 5.00 12.99 6.15 4.26 5.38 8.57 5.41 6.06 7.53 6.52 2.38 5.56 5.77 3.92 8.00 2.90 3.12 1.82 7.37 K alternative_acceptor CG10171 chr3L - chr3L_13380699_13380765 chr3L_13380711_13380765 chr3L_13380766_13380916;chr3L_13379701_13380698 3.85 10.00 2.86 10.81 NA 0.00 3.45 6.06 5.00 5.00 6.67 3.12 0.00 5.26 2.78 3.85 0.00 0.00 0.00 3.03 7.14 1.92 7.69 3.03 3.23 4.76 6.06 5.00 5.26 5.41 3.23 3.33 4.55 2.70 2.63 7.14 4.76 3.85 4.35 3.64 0.00 5.56 6.25 3.57 2.17 1.82 11.63 2.08 7.69 0.00 5.56 NA 0.00 0.00 2.56 5.56 3.85 5.26 K jcn_only_AD NaCP60E,I_chr2R_20805053_20805170 chr2R + chr2R_20805005_20805170;chr2R_20805101_20805170 chr2R_20805053_20805170 chr2R_20805171_20805270;chr2R_20804953_20805004 9.32 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 13.64 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG8878 chr2R - chr2R_8037642_8038415 chr2R_8037645_8038415 chr2R_8038416_8038531;chr2R_8037556_8037641 30.60 18.18 22.73 38.71 25.00 40.00 25.00 31.11 38.46 25.00 NA 30.43 24.00 45.00 52.94 28.07 41.67 NA 35.71 28.21 35.71 31.71 28.57 NA 41.67 30.00 37.50 22.22 33.33 29.73 38.24 28.57 29.03 23.40 32.14 33.33 50.00 35.71 NA 32.43 30.43 27.03 29.41 41.67 29.41 25.00 38.46 23.21 32.65 NA 23.08 28.57 50.00 30.77 21.88 35.71 36.36 20.00 N intron_retention orb2,I_chr3L_8942860_8947477 chr3L - chr3L_8940990_8941183 chr3L_8940989_8940990;chr3L_8941183_8941184 chr3L_8940928_8940989;chr3L_8941184_8941771 24.88 NA NA 30.77 NA NA NA NA 11.76 NA NA 26.67 NA NA NA NA NA NA NA 31.58 NA 34.78 NA 11.76 NA NA NA NA 46.15 28.57 NA NA 21.05 NA NA NA NA NA NA 0.00 NA 29.41 NA NA NA NA NA 14.29 NA 7.69 23.08 NA NA NA NA NA NA NA K jcn_only_AD MB8.chr3R.pasa.66,CG1105,I_chr3R_2892020_2892122,RI_chr3R_2892020_2892252,I_chr3R_2892305_2892645 chr3R - chr3R_2892020_2892122;chr3R_2892020_2892645 chr3R_2892020_2892252 chr3R_2891920_2892019;chr3R_2892646_2892745 0.00 0.00 0.00 0.00 0.00 4.26 1.54 0.00 0.00 2.94 0.00 1.41 0.00 0.00 0.00 0.00 2.94 0.00 2.63 0.00 3.23 1.64 2.74 0.00 0.00 0.00 3.92 0.00 0.00 0.00 5.66 2.44 2.78 2.50 4.35 2.04 1.61 3.39 0.00 2.78 0.00 1.05 0.00 0.00 2.50 1.59 0.00 4.17 0.00 4.65 0.00 2.94 3.23 0.00 0.00 4.08 0.00 0.00 K alternative_acceptor cta,I_chr2L_22882756_22883485 chr2L + chr2L_22883625_22883688 chr2L_22883625_22883679 chr2L_22883505_22883624;chr2L_22883689_22883736 100.00 NA NA NA NA NA NA NA 91.67 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K alternative_donor gcl,I_chr2R_4611970_4612145,psnoRNA:gcl-a,I_chr2R_4614277_4614332 chr2R + chr2R_4611943_4614119 chr2R_4611970_4614119 chr2R_4614120_4614231;chr2R_4611870_4611942 100.00 NA NA 100.00 NA NA NA 100.00 90.00 NA NA 92.86 NA NA NA 100.00 NA NA 85.71 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA 92.31 91.67 NA NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA 90.00 100.00 NA NA NA NA NA NA NA 100.00 88.89 K intron_retention CEI_chrX_17177009_17196871,CG5445,I_chrX_17196752_17196871,RI_chrX_17196772_17196871,I_chrX_17196820_17196875,I_chrX_17198393_17198730 chrX + chrX_17196681_17196871 chrX_17196680_17196681;chrX_17196871_17196872 chrX_17196672_17196680;chrX_17196872_17196971 100.00 100.00 100.00 100.00 NA 91.67 100.00 93.75 95.00 88.89 NA 95.00 NA 88.89 100.00 93.75 NA 100.00 100.00 94.74 NA 100.00 90.91 94.74 91.67 88.89 94.12 90.00 94.44 92.86 100.00 100.00 100.00 100.00 92.31 100.00 91.67 93.75 100.00 95.45 100.00 95.83 100.00 100.00 100.00 100.00 100.00 95.45 92.31 100.00 95.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 K intron_retention CoRest chrX + chrX_19423635_19423706 chrX_19423634_19423635;chrX_19423706_19423707 chrX_19422927_19423634;chrX_19423707_19424349 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.35 0.00 0.00 2.44 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Sin3A,I_chr2R_8473578_8480185,RI_chr2R_8479951_8480233 chr2R - chr2R_8464499_8466633 chr2R_8464499_8464958;chr2R_8465159_8466633 chr2R_8464959_8465158 chr2R_8464073_8464498;chr2R_8466634_8466733 0.00 0.00 1.15 1.00 0.00 0.00 0.00 1.03 0.63 0.00 1.54 0.62 1.59 1.54 0.85 3.37 0.00 2.70 2.50 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.80 1.98 0.00 0.00 0.00 0.00 0.00 0.78 0.95 0.78 0.00 0.00 0.00 0.43 0.71 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Gprk1,R_chr2R_238724_265876,RI_chr2R_357455_358274 chr2R - chr2R_210444_223881 chr2R_210443_210444;chr2R_223881_223882 chr2R_210281_210443;chr2R_223882_223902 0.00 NA NA 13.33 NA NA 10.00 12.00 8.82 NA NA 0.00 NA NA NA 6.67 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 0.00 NA NA 0.00 NA 13.51 NA 5.88 NA NA NA NA 0.00 NA NA K alternative_last_exon Nrg,RI_chrX_8411636_8425729,noncoding_22606 chrX + chrX_8442559_8445782 chrX_8442559_8444115 chrX_8445783_8449191 chrX_8444116_8445291 chrX_8442455_8442558 95.65 96.15 95.65 95.45 90.91 95.24 93.02 96.88 96.43 95.24 100.00 94.34 96.15 97.73 95.65 97.50 96.15 95.65 96.97 95.35 100.00 95.45 96.30 95.45 92.31 94.44 93.33 94.44 92.86 95.00 96.30 95.24 97.14 95.71 96.55 100.00 93.75 100.00 92.86 97.14 95.83 96.23 96.67 95.00 94.44 97.83 95.83 97.92 96.25 95.65 96.77 95.24 94.74 94.12 96.30 95.45 93.55 96.88 K intron_retention crol,I_chr2L_11799403_11802904 chr2L - chr2L_11800323_11802904 chr2L_11800322_11800323;chr2L_11802904_11802905 chr2L_11800155_11800322;chr2L_11802905_11803004 85.96 87.23 82.14 73.74 90.41 88.57 90.79 86.59 89.63 79.35 90.38 83.73 86.54 88.00 85.26 86.00 83.33 84.75 85.42 80.77 85.96 70.23 83.97 86.71 84.25 84.29 81.56 64.94 85.62 86.49 87.72 90.54 85.40 89.09 89.92 83.92 84.80 82.27 88.03 83.33 85.33 86.79 86.89 88.31 87.88 78.95 86.08 86.88 82.40 87.00 84.93 81.93 90.14 82.86 84.21 86.89 91.30 91.59 K intron_retention CG7945,RI_chr3L_15515681_15516932,RI_chr3L_15516824_15516932 chr3L - chr3L_15516824_15516932 chr3L_15516823_15516824;chr3L_15516932_15516933 chr3L_15516724_15516823;chr3L_15516933_15517032 88.89 88.89 NA 90.00 71.43 88.89 72.22 94.12 78.95 NA 66.67 94.12 90.00 87.50 92.31 NA 87.50 NA 91.67 92.86 NA NA 90.91 73.33 NA 90.00 100.00 NA NA NA 100.00 NA NA 86.36 63.64 NA NA 60.00 NA 88.89 NA 85.00 83.33 88.89 NA 60.00 88.89 NA 85.00 NA 91.67 NA 70.00 NA 100.00 NA NA NA K intron_retention arm,I_chrX_1793073_1794406,RI_chrX_1795648_1795745,I_chrX_1798310_1798525,I_chrX_1798315_1798577 chrX - chrX_1787533_1788540 chrX_1787532_1787533;chrX_1788540_1788541 chrX_1787436_1787532;chrX_1788541_1788813 0.93 0.63 0.27 0.73 1.25 0.87 1.83 0.84 0.97 0.75 1.14 0.83 0.37 1.06 1.30 1.72 1.75 1.15 1.33 1.03 0.50 0.93 0.55 0.51 0.55 0.77 1.34 1.28 1.50 0.48 1.63 1.08 0.51 0.89 1.22 1.28 0.87 0.79 0.96 0.89 0.64 1.34 1.06 0.42 0.82 1.04 0.80 2.65 1.17 0.96 1.01 1.29 0.45 0.57 0.84 0.80 0.67 1.70 K alternative_donor CG7048,I_chr3R_18313003_18313231,R_chr3R_18313119_18313234,I_chr3R_18313402_18313502 chr3R + chr3R_18313003_18313231 chr3R_18313115_18313231 chr3R_18313232_18313331;chr3R_18312937_18313002 99.10 99.15 99.07 98.23 100.00 100.00 98.29 99.28 97.86 97.92 98.51 100.00 100.00 98.04 99.10 99.21 98.57 100.00 98.65 99.54 98.59 80.77 98.57 100.00 98.67 100.00 100.00 98.73 98.78 98.80 97.96 98.04 99.05 99.21 98.95 100.00 98.70 99.07 99.34 97.06 100.00 98.94 100.00 100.00 98.48 100.00 99.33 97.80 99.37 99.27 99.24 98.85 100.00 100.00 99.04 100.00 99.17 99.40 K intron_retention CG33090,CEI_chr2L_14342636_14342777 chr2L + chr2L_14341577_14342777 chr2L_14341576_14341577;chr2L_14342777_14342778 chr2L_14341307_14341576;chr2L_14342778_14342877 9.09 0.00 19.05 18.18 6.67 11.76 19.05 5.56 13.89 6.25 NA 13.79 NA NA 10.71 8.33 NA 5.56 12.50 13.16 12.50 8.70 5.26 8.70 5.88 9.09 10.00 10.00 4.35 16.67 0.00 0.00 7.55 18.18 11.11 12.50 0.00 18.52 5.71 14.71 NA 10.26 NA 9.09 0.00 11.11 0.00 12.50 10.26 NA 6.25 13.33 NA 5.88 22.22 9.09 0.00 0.00 K intron_retention CG3348,RI_chr3R_23117734_23117847 chr3R - chr3R_23117716_23117847 chr3R_23117715_23117716;chr3R_23117847_23117848 chr3R_23117634_23117715;chr3R_23117848_23117947 1.53 3.45 0.00 1.77 0.00 0.00 1.52 1.22 2.13 NA 0.00 2.72 1.75 2.70 0.00 0.00 0.00 0.00 2.50 1.29 0.00 0.00 NA 23.08 NA 0.00 NA 33.33 6.67 NA 0.63 0.00 0.00 1.90 NA NA NA NA NA 8.33 2.70 1.60 0.00 NA 1.54 6.45 25.00 5.56 2.15 5.56 NA NA 0.00 NA 0.00 NA 4.35 0.00 K intron_retention CG12030 chr3L + chr3L_649420_650232 chr3L_649419_649420;chr3L_650232_650233 chr3L_649179_649419;chr3L_650233_650523 0.39 0.32 0.26 0.42 0.32 0.44 0.73 0.38 0.28 1.08 0.14 0.28 0.66 0.39 0.48 0.57 0.24 0.53 0.43 0.44 0.08 1.19 0.37 0.35 0.28 0.28 0.73 1.34 1.89 0.25 1.42 0.41 0.44 0.54 0.40 0.27 0.46 0.20 0.37 0.25 0.61 0.39 0.35 0.45 0.48 0.27 0.43 0.30 0.39 0.23 0.54 0.21 0.38 0.28 0.30 0.32 0.28 0.48 K jcn_only_AD eIF2B-delta chr2R + chr2R_19274141_19274529 chr2R_19274146_19274529 chr2R_19274530_19274619;chr2R_19274016_19274140 97.06 97.14 100.00 96.36 NA 100.00 98.75 98.39 98.96 NA 95.83 98.85 NA 97.30 97.06 100.00 100.00 96.88 93.02 95.71 95.83 94.64 92.16 97.44 100.00 96.77 94.87 92.86 93.75 79.31 100.00 76.19 NA 98.28 90.48 93.33 96.55 100.00 97.78 86.84 NA 96.88 100.00 100.00 NA 92.86 96.67 95.65 100.00 95.45 100.00 100.00 100.00 100.00 94.74 100.00 100.00 95.00 K intron_retention CG31673,RI_chr2L_20830210_20830280 chr2L + chr2L_20830797_20830860 chr2L_20830796_20830797;chr2L_20830860_20830861 chr2L_20830728_20830796;chr2L_20830861_20830928 0.00 0.00 0.00 1.42 0.00 0.00 0.00 0.37 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention aux chr3R + chr3R_52414_52472 chr3R_52413_52414;chr3R_52472_52473 chr3R_52252_52413;chr3R_52473_53244 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 1.03 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 1.43 0.00 0.00 0.00 2.35 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor phtf,I_chr2R_2629598_2630209 chr2R + chr2R_2631050_2631157 chr2R_2631050_2631097 chr2R_2630542_2631049;chr2R_2631158_2632041 100.00 100.00 100.00 95.00 100.00 100.00 100.00 95.65 96.55 92.86 100.00 100.00 100.00 100.00 93.75 92.31 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 95.65 90.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 96.67 94.44 100.00 100.00 100.00 100.00 100.00 94.12 100.00 93.33 100.00 96.15 100.00 93.33 100.00 90.91 93.33 100.00 94.12 100.00 100.00 100.00 K intron_retention Adf1,CG15908_CG9410 chr2R + chr2R_2554519_2554577 chr2R_2554518_2554519;chr2R_2554577_2554578 chr2R_2554225_2554518;chr2R_2554578_2555592 0.00 0.00 0.00 1.27 0.00 0.00 3.57 0.00 1.50 0.00 0.00 0.86 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.66 0.00 11.76 0.89 0.00 1.37 0.00 3.70 3.57 10.71 2.33 1.59 0.00 0.00 2.38 0.00 0.00 0.00 1.10 2.00 0.00 1.75 1.52 0.00 0.00 0.00 0.00 1.05 2.50 0.78 3.03 0.97 0.00 0.00 0.00 0.00 0.00 1.18 0.00 K intron_retention Atet,chr2L_4334987_4335394.0,chr2L_4335788_4336447.0 chr2L + chr2L_4334440_4336449 chr2L_4334439_4334440;chr2L_4336449_4336450 chr2L_4334430_4334439;chr2L_4336450_4336957 14.29 NA NA NA NA NA NA 15.79 26.09 NA NA 14.29 NA NA NA NA NA NA NA NA NA 26.67 NA NA NA NA NA NA NA 13.33 NA NA NA 14.29 NA NA NA NA NA NA NA NA NA 9.09 NA NA NA 4.76 NA NA NA NA NA NA NA NA NA 15.38 K intron_retention Fer1HCH,I_chr3R_26212319_26213496,I_chr3R_26213132_26213185 chr3R - chr3R_26213325_26213496 chr3R_26213324_26213325;chr3R_26213496_26213497 chr3R_26213186_26213324;chr3R_26213497_26213534 22.81 20.33 18.04 41.82 15.03 23.89 32.08 27.83 19.98 18.46 19.32 27.13 19.09 20.75 23.88 13.79 23.06 20.55 26.80 22.29 17.55 16.05 26.60 29.67 32.63 35.96 42.72 33.12 36.18 18.46 19.52 24.40 42.53 24.62 30.71 38.95 14.04 22.75 22.81 23.61 47.27 22.33 25.08 29.53 25.17 27.41 20.61 27.38 20.19 17.45 26.24 21.54 18.84 22.65 22.43 22.46 11.18 19.08 K jcn_only_AA CG1265,I_chr3L_4255296_4255550 chr3L + chr3L_4255296_4255353;chr3L_4255296_4255550;chr3L_4255296_4255457 chr3L_4255296_4255609 chr3L_4255196_4255295;chr3L_4255610_4255650 95.19 95.24 94.12 86.76 96.36 98.39 87.50 98.11 94.41 91.49 94.23 95.04 80.00 92.45 87.69 91.00 98.28 93.15 93.85 95.19 95.24 96.25 96.59 95.45 96.30 86.89 97.75 97.06 90.00 98.04 90.28 97.73 91.43 92.59 90.91 100.00 92.73 91.67 93.64 95.88 97.73 96.45 98.04 95.96 100.00 94.50 96.39 95.83 91.53 97.50 94.19 93.06 96.55 95.89 90.91 98.11 95.73 92.42 K cassette CG7337,I_chr2L_1938620_1938887,I_chr2L_1942183_1942233 chr2L + chr2L_1938620_1941754 chr2L_1938620_1941581;chr2L_1941678_1941754 chr2L_1941582_1941677 chr2L_1938520_1938619;chr2L_1941755_1941903 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.67 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Rnp4F,I_chrX_5214525_5214591 chrX - chrX_5214525_5214591 chrX_5214538_5214591 chrX_5214592_5214691;chrX_5214425_5214524 97.87 96.97 96.00 100.00 100.00 100.00 96.00 100.00 97.87 95.45 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 97.62 100.00 100.00 100.00 96.55 100.00 96.43 96.55 92.59 96.30 97.06 96.55 96.15 100.00 97.73 96.97 95.24 97.87 100.00 98.00 100.00 100.00 100.00 100.00 97.06 96.08 97.78 96.88 97.30 95.45 95.45 100.00 95.83 96.97 100.00 96.88 K intron_retention Amun,I_chrX_11607839_11608272,I_chrX_11607842_11608105,I_chrX_11607842_11608125,RI_chrX_11607842_11608272 chrX - chrX_11607839_11608590 chrX_11607838_11607839;chrX_11608590_11608591 chrX_11607788_11607838;chrX_11608591_11608810 64.29 90.00 52.94 62.50 72.73 64.29 58.82 68.00 43.33 NA 73.33 64.52 50.00 64.29 52.63 77.78 71.43 64.71 52.94 65.71 83.33 55.56 63.64 NA 75.00 55.56 88.89 NA 66.67 34.62 73.33 50.00 40.68 68.18 66.67 61.90 52.94 NA 82.35 62.50 60.00 76.00 75.00 41.67 52.94 64.52 63.64 47.37 67.86 60.00 70.00 NA 64.29 NA 54.55 90.00 77.78 41.03 K jcn_only_AD Pi3K92E,I_chr3R_16459436_16459551,I_chr3R_16459436_16459848 chr3R - chr3R_16459436_16460267;chr3R_16459436_16460340;chr3R_16459436_16460287;chr3R_16459436_16459551 chr3R_16459436_16459848 chr3R_16459336_16459435;chr3R_16460341_16460435 2.25 2.70 0.00 2.82 0.00 0.00 3.28 2.94 3.70 3.85 0.00 0.00 3.12 3.39 0.00 4.00 2.50 5.56 4.55 1.59 0.00 0.00 2.90 0.00 0.00 4.44 4.35 0.00 4.76 0.00 4.08 NA 5.56 5.17 2.86 0.00 0.00 0.00 0.00 2.25 0.00 1.41 0.00 4.17 NA 0.00 8.70 0.00 2.38 NA 3.92 0.00 NA NA 1.96 0.00 4.00 NA K intron_retention CG10263,I_chr2L_19581286_19581348 chr2L - chr2L_19581286_19581348 chr2L_19581285_19581286;chr2L_19581348_19581349 chr2L_19581186_19581285;chr2L_19581349_19581448 100.00 95.83 95.45 100.00 92.31 100.00 95.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 94.44 100.00 90.91 100.00 92.31 100.00 100.00 100.00 97.44 95.24 100.00 100.00 100.00 100.00 97.83 100.00 95.24 100.00 98.11 93.33 95.00 96.43 97.56 100.00 97.67 98.48 95.35 100.00 100.00 100.00 98.46 98.15 100.00 100.00 100.00 97.06 100.00 100.00 100.00 95.83 96.00 96.77 97.56 100.00 K intron_retention CG14425,Sxl,CG14425_Sxl,CEF_chrX_6984538_6992033 chrX - chrX_6978853_6979190 chrX_6978852_6978853;chrX_6979190_6979191 chrX_6978632_6978852;chrX_6979191_6979372 0.00 2.15 0.00 0.00 0.00 0.00 2.11 0.00 2.72 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 1.19 0.00 1.12 0.00 2.17 1.89 0.00 0.00 0.00 0.00 4.48 0.00 0.00 0.00 0.00 0.83 0.79 0.00 1.09 5.33 0.00 1.38 0.00 0.00 0.00 0.00 2.22 0.00 0.00 1.75 0.00 0.00 1.27 2.21 0.00 3.45 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chr3R_25628402_25628511,ncd,I_chr3R_25632049_25632125,RI_chr3R_25658089_25658914 chr3R - chr3R_25631370_25631428 chr3R_25631369_25631370;chr3R_25631428_25631429 chr3R_25629998_25631369;chr3R_25631429_25632066 0.00 0.00 0.00 0.00 0.00 0.00 0.46 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.67 0.77 0.00 0.00 0.00 0.33 0.00 0.83 0.00 0.39 0.00 0.00 1.91 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.77 0.00 0.25 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.20 0.50 0.50 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rpb7,RI_chr3R_11050688_11050804,I_chr3R_11054902_11054955 chr3R - chr3R_11048368_11048424 chr3R_11048367_11048368;chr3R_11048424_11048425 chr3R_11048230_11048367;chr3R_11048425_11048745 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.73 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10600,I_chr2L_18836445_18836522,RI_chr2L_18838793_18838882 chr2L - chr2L_18838159_18838508 chr2L_18838158_18838159;chr2L_18838508_18838509 chr2L_18837127_18838158;chr2L_18838509_18838792 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA NA K alternative_acceptor CG7609,ATPsyn-gamma,I_chr3R_25574492_25574541 chr3R - chr3R_25574471_25574545 chr3R_25574492_25574545 chr3R_25574546_25574564;chr3R_25574392_25574470 95.91 96.48 95.21 93.89 92.78 93.76 93.22 94.71 95.20 95.14 93.49 95.32 93.06 94.97 92.95 95.91 92.84 95.93 93.52 94.80 94.59 98.17 98.40 95.10 94.39 93.71 98.33 97.75 98.30 99.22 94.67 96.85 97.15 94.73 99.44 97.69 97.45 96.69 95.60 98.00 97.85 93.99 96.00 98.08 94.99 99.07 96.71 98.18 96.10 96.37 97.39 93.79 95.28 99.50 95.29 98.12 95.92 97.77 K jcn_only_AA Smox,I_chrX_8034946_8035668,RI_chrX_8034951_8035014,I_chrX_8034951_8035569,I_chrX_8035142_8035238 chrX - chrX_8034946_8035668 chrX_8034951_8035668 chrX_8035669_8035669;chrX_8034851_8034945 97.31 97.30 97.44 96.65 95.29 96.59 95.61 97.73 98.11 100.00 96.84 97.31 100.00 97.80 94.93 97.83 95.40 96.04 94.51 98.66 96.23 98.17 97.06 97.50 97.10 96.04 97.80 96.04 95.83 98.06 97.12 96.77 97.64 98.26 96.97 97.03 99.35 98.88 96.40 97.25 97.37 98.29 97.12 99.19 98.41 97.92 98.46 96.31 93.27 98.11 97.47 98.61 100.00 95.65 99.12 96.15 95.35 98.01 N jcn_only_AA CG5706,I_chr3R_20078025_20078083 chr3R - chr3R_20078010_20078087 chr3R_20078025_20078087 chr3R_20078088_20078118;chr3R_20077925_20078009 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N jcn_only_AD CG2003 chr3R + chr3R_27815249_27815312;chr3R_27815253_27815312 chr3R_27815189_27815312 chr3R_27815313_27816636;chr3R_27815109_27815188 4.00 7.69 2.63 2.86 5.17 3.41 3.90 2.44 2.52 9.68 2.38 2.70 6.67 0.00 3.37 6.25 5.71 4.05 4.26 2.99 4.35 0.00 4.94 2.94 2.44 1.85 7.14 15.15 0.00 8.75 1.79 4.23 7.56 4.00 2.04 9.30 4.55 2.86 3.66 7.55 4.26 4.52 1.67 0.00 1.22 4.04 5.56 5.38 2.01 7.50 5.75 6.12 4.00 4.44 3.23 1.56 4.90 1.46 K intron_retention gish chr3R + chr3R_12099895_12100140 chr3R_12099894_12099895;chr3R_12100140_12100141 chr3R_12099888_12099894;chr3R_12100141_12100597 100.00 100.00 93.75 100.00 NA 100.00 100.00 98.00 100.00 NA 100.00 97.62 96.43 100.00 100.00 100.00 100.00 100.00 96.55 96.88 100.00 100.00 95.83 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 NA 92.86 100.00 100.00 100.00 100.00 100.00 100.00 NA 90.00 100.00 100.00 100.00 90.00 K intron_retention CG4407,I_chrX_12797000_12797141,RI_chrX_12797000_12797409,I_chrX_12799068_12799634 chrX - chrX_12797000_12797110 chrX_12796999_12797000;chrX_12797110_12797111 chrX_12796900_12796999;chrX_12797111_12797286 0.00 NA 0.00 0.00 NA NA 2.94 0.00 0.00 0.00 NA 2.94 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 3.57 0.00 0.00 NA NA NA NA 0.00 NA NA 8.33 NA NA 0.00 NA NA 0.00 NA 2.63 0.00 0.00 0.00 NA NA 5.88 0.00 0.00 0.00 4.17 NA NA 0.00 0.00 NA NA K intron_retention CaMKII,I_chr4_1058049_1058127,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1058217_1058271 chr4_1058216_1058217;chr4_1058271_1058272 chr4_1058137_1058216;chr4_1058272_1058285 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 2.11 NA 0.00 1.56 5.71 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 3.85 2.56 0.00 0.00 16.67 NA 0.00 0.00 3.12 NA 0.00 2.70 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 2.50 0.00 0.00 0.00 0.00 NA 0.00 6.25 0.00 0.00 K alternative_donor CEI_chrX_17177009_17196871,CG5445,I_chrX_17196752_17196871,RI_chrX_17196772_17196871,I_chrX_17196820_17196875,I_chrX_17198393_17198730 chrX + chrX_17196546_17196871;chrX_17196820_17196871;chrX_17196541_17196871;chrX_17196617_17196871 chrX_17196681_17196871 chrX_17196872_17196971;chrX_17196536_17196540 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 6.25 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 11.11 0.00 0.00 0.00 0.00 11.11 7.69 7.69 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 6.25 0.00 0.00 0.00 0.00 7.69 0.00 0.00 K intron_retention sec31,I_chr2R_4783150_4783708 chr2R + chr2R_4783150_4783458 chr2R_4783149_4783150;chr2R_4783458_4783459 chr2R_4783050_4783149;chr2R_4783459_4783558 0.00 0.00 3.28 0.00 0.00 0.00 2.00 1.90 0.00 0.00 0.00 2.80 0.00 1.61 0.00 1.53 2.27 0.00 3.45 1.20 0.00 4.35 1.55 1.53 6.90 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 3.74 0.00 0.00 2.67 0.00 0.00 1.53 0.00 1.38 0.00 1.57 5.56 2.86 2.53 5.77 1.92 0.86 1.45 0.00 0.00 0.00 0.00 0.00 0.89 0.00 K jcn_only_AD zip,I_chr2R_20878796_20879147 chr2R - chr2R_20898140_20898898;chr2R_20898140_20898834 chr2R_20898140_20898992 chr2R_20897903_20898139;chr2R_20898993_20898996 0.00 0.00 0.00 0.00 0.00 0.35 0.23 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.49 0.16 0.60 0.31 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.31 0.00 0.12 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG6845,I_chr3L_148414_148465,I_chr3L_148414_148475,I_chr3L_148414_148489 chr3L + chr3L_148414_148465;chr3L_148414_148475;chr3L_148414_148489 chr3L_148414_148461 chr3L_148350_148413;chr3L_148490_148555 91.05 91.89 91.18 87.95 96.67 80.56 91.51 94.44 92.17 77.27 88.89 94.67 86.67 89.13 94.44 88.89 95.45 94.44 98.25 94.44 82.14 90.91 82.61 83.87 NA 91.67 NA NA 96.55 90.32 93.18 NA 87.50 94.44 81.48 NA 100.00 80.00 85.00 87.23 90.62 91.89 91.49 95.65 88.57 84.78 95.24 86.49 88.57 95.35 90.32 85.29 NA NA 94.52 94.12 93.55 90.70 K jcn_only_AD CG1640,RI_chrX_13265127_13267895,I_chrX_13265553_13267895,I_chrX_13265618_13267895,RI_chrX_13266680_13267895,RI_chrX_13267529_13267895,I_chrX_13271541_13271890 chrX + chrX_13265401_13267895;chrX_13265248_13267895;chrX_13265094_13267895;chrX_13265295_13267895 chrX_13265560_13267895 chrX_13267896_13267973;chrX_13265065_13265093 1.43 1.85 1.54 2.67 3.51 0.00 3.64 2.74 1.75 0.00 0.00 1.32 0.00 3.33 3.77 2.22 6.82 0.00 5.56 0.00 0.00 4.55 0.00 0.00 0.00 4.88 0.00 0.00 3.23 1.64 0.00 2.33 5.56 1.43 7.14 0.00 0.00 0.00 0.00 1.01 10.53 1.20 2.27 2.08 4.55 1.47 0.00 10.77 2.22 0.00 0.00 0.00 0.00 0.00 8.93 0.00 0.00 4.59 K jcn_only_AD E2f,I_chr3R_17447419_17447508,CG6353 chr3R - chr3R_17447419_17448533 chr3R_17447419_17447508 chr3R_17447319_17447418;chr3R_17448534_17449373 0.00 0.00 0.00 0.22 0.00 0.35 0.00 0.28 0.14 0.00 0.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.43 0.32 0.00 0.68 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.12 0.31 0.00 0.00 0.47 0.00 0.00 0.25 0.00 0.00 0.38 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.33 K jcn_only_AA CG3860,RI_chr2R_19882285_19882350 chr2R - chr2R_19882268_19882350 chr2R_19882285_19882350 chr2R_19882351_19882429;chr2R_19882210_19882267 0.00 NA 0.00 0.00 4.76 0.00 2.27 4.00 0.00 NA NA 0.00 NA NA 8.70 0.00 NA 0.00 NA 2.94 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 3.85 NA NA 0.00 NA NA NA NA 0.00 4.76 0.00 0.00 NA NA NA 0.00 NA 4.55 2.50 NA 0.00 NA NA NA 0.00 NA NA 0.00 K jcn_only_AA janA,RI_chr3R_25864678_25864966,I_chr3R_25864692_25864783,I_chr3R_25871509_25871807 chr3R - chr3R_25864678_25864783 chr3R_25864692_25864783 chr3R_25864784_25864883;chr3R_25864592_25864677 0.00 0.00 1.46 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.39 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.30 0.00 0.42 0.56 0.00 0.82 0.00 0.00 0.00 0.26 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.38 0.00 K intron_retention CG9425,I_chr3L_14783173_14784369 chr3L + chr3L_14790874_14790954 chr3L_14790873_14790874;chr3L_14790954_14790955 chr3L_14788975_14790873;chr3L_14790955_14791455 98.28 98.21 100.00 98.89 100.00 100.00 98.68 98.99 97.97 95.74 100.00 98.06 98.00 98.04 100.00 100.00 100.00 98.36 98.08 99.15 98.15 98.85 100.00 98.28 97.67 97.83 97.26 98.51 97.87 98.36 98.25 100.00 97.40 99.00 97.78 96.08 99.02 92.86 98.70 97.87 100.00 100.00 97.73 98.48 96.55 97.44 95.74 97.50 99.08 100.00 98.55 100.00 97.67 96.55 98.51 97.62 97.14 96.67 K jcn_only_AD CG9775,I_chr3R_464132_464367,I_chr3R_466059_466296 chr3R - chr3R_465475_465734 chr3R_465475_465590 chr3R_465356_465474;chr3R_465735_466058 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.56 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 1.57 0.00 0.00 0.00 0.00 2.63 0.00 3.17 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 2.70 0.00 1.61 0.00 1.05 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.85 1.67 K jcn_only_AD RpL24,I_chr2L_13394941_13395015 chr2L - chr2L_13394941_13395055 chr2L_13394941_13395015 chr2L_13394865_13394940;chr2L_13395056_13395065 0.05 0.12 0.00 0.04 0.00 0.06 0.00 0.00 0.07 0.27 0.14 0.00 0.20 0.00 0.04 0.00 0.07 0.00 0.07 0.02 0.00 0.00 0.86 0.55 1.04 0.08 0.93 0.00 0.21 0.54 0.88 0.00 0.00 0.00 0.00 0.00 0.17 0.35 0.21 0.07 0.00 0.00 0.00 0.33 0.05 0.18 0.00 0.00 0.20 0.70 0.00 0.36 0.00 0.00 0.05 0.32 0.11 0.09 K jcn_only_AA CG30460,F_chr2R_12957263_12957403 chr2R - chr2R_12954957_12955030 chr2R_12954960_12955030 chr2R_12955031_12955720;chr2R_12954321_12954956 92.34 90.00 NA NA NA NA 94.44 NA 94.59 100.00 NA 88.24 NA NA NA NA NA NA NA 84.38 NA 93.02 89.36 85.71 95.24 NA 97.37 91.67 94.23 97.06 96.30 NA 93.10 90.91 NA NA 95.12 95.24 95.65 93.02 85.71 90.00 NA 90.32 NA 85.71 91.30 94.87 89.66 88.57 96.55 NA NA 87.50 NA 97.37 90.48 81.82 K intron_retention CG30344,RI_chr2R_5033951_5034150,I_chr2R_5036518_5036570 chr2R + chr2R_5035004_5035054 chr2R_5035003_5035004;chr2R_5035054_5035055 chr2R_5034868_5035003;chr2R_5035055_5035381 0.00 0.00 0.00 0.00 0.00 0.00 1.89 2.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA mthl10 chr3L - chr3L_333641_333941 chr3L_333717_333941 chr3L_333942_334119;chr3L_333522_333640 1.01 1.01 0.00 0.00 2.94 0.00 4.76 1.56 2.23 3.57 0.00 2.11 4.55 4.23 2.25 0.00 1.43 1.27 1.25 1.27 1.64 0.00 0.00 1.25 7.32 3.92 1.39 0.00 8.33 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 1.35 0.72 1.53 2.33 0.68 4.23 1.01 5.95 2.99 0.00 3.64 0.69 0.00 1.01 0.00 2.00 0.00 2.97 0.00 0.00 0.00 K intron_retention scarface,I_chr2R_1568023_1575180,R_chr2R_1575544_1578425 chr2R - chr2R_1575544_1579156 chr2R_1575543_1575544;chr2R_1579156_1579157 chr2R_1575444_1575543;chr2R_1579157_1579187 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA K intron_retention CG11883 chr2R + chr2R_6528090_6528170 chr2R_6528089_6528090;chr2R_6528170_6528171 chr2R_6528019_6528089;chr2R_6528171_6529167 85.71 NA NA 76.47 NA NA 100.00 81.82 100.00 NA NA 91.67 NA 90.00 NA 85.71 NA NA NA 71.43 NA NA NA NA NA 88.89 NA NA NA NA 72.73 NA NA 76.19 NA NA NA NA NA NA NA 88.24 87.50 NA NA NA NA NA 76.92 NA 77.78 NA NA NA 90.91 NA NA 60.00 K alternative_acceptor mfas,I_chr3R_7811954_7812017,RI_chr3R_7818607_7818970 chr3R - chr3R_7815048_7817793;chr3R_7815051_7817793 chr3R_7815246_7817793 chr3R_7817794_7817801;chr3R_7814932_7815047 64.42 59.69 66.12 68.79 76.61 NA 65.00 81.25 67.14 NA 63.24 68.51 NA 62.10 60.77 71.56 63.91 62.13 NA 58.90 64.62 54.84 66.40 61.54 55.71 NA 60.92 NA 75.00 66.46 63.56 58.93 64.98 66.67 72.13 65.99 65.88 63.55 60.19 69.97 63.33 60.57 65.29 76.53 70.88 69.32 63.11 72.95 62.79 NA 64.22 63.04 64.10 NA NA 62.36 63.00 67.27 K intron_retention RpS11,I_chr2R_8087545_8087698,I_chr2R_8087747_8088193 chr2R - chr2R_8087747_8088279 chr2R_8087746_8087747;chr2R_8088279_8088280 chr2R_8087699_8087746;chr2R_8088280_8088293 7.85 10.34 5.39 2.63 4.05 7.41 10.56 3.07 7.38 8.33 5.39 7.12 4.93 8.09 3.49 8.53 2.27 7.22 3.32 7.74 5.20 16.05 28.17 21.69 23.08 5.30 30.49 14.94 13.01 7.41 12.57 4.19 4.22 3.20 19.59 10.00 16.96 18.56 26.55 10.53 6.84 3.80 3.60 9.21 3.73 7.85 24.55 5.85 7.19 25.00 32.00 12.16 10.66 31.34 3.51 19.12 11.85 4.12 K intron_retention CG8031 chr3R - chr3R_8835217_8835280 chr3R_8835216_8835217;chr3R_8835280_8835281 chr3R_8835104_8835216;chr3R_8835281_8835349 10.26 11.11 14.67 37.29 9.09 9.88 16.53 7.46 7.76 12.00 19.30 13.24 15.71 12.50 10.78 7.09 9.86 9.18 13.70 9.43 19.64 11.76 12.96 8.51 22.50 38.64 23.33 10.26 19.35 7.41 21.55 8.42 4.27 11.40 12.99 24.14 8.07 10.71 10.00 10.06 17.14 9.93 8.20 7.56 7.00 8.33 6.92 6.35 17.12 12.69 12.06 13.13 7.61 9.68 9.91 7.41 7.25 9.09 K intron_retention Sap47,I_chr3R_11761076_11761674,I_chr3R_11761436_11761674,F_chr3R_11761635_11761698,E_chr3R_11761635_11761703 chr3R + chr3R_11761307_11761703 chr3R_11761306_11761307;chr3R_11761703_11761704 chr3R_11761299_11761306;chr3R_11761704_11761774 100.00 100.00 95.24 100.00 93.33 100.00 96.77 100.00 98.25 90.91 100.00 97.96 100.00 100.00 96.00 100.00 100.00 100.00 96.77 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 95.45 100.00 100.00 100.00 95.24 97.30 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 96.00 97.56 K intron_retention M(2)21AB,I_chr2L_110878_111037,I_chr2L_112022_112689,RI_chr2L_132256_132482 chr2L + chr2L_110878_111004 chr2L_110877_110878;chr2L_111004_111005 chr2L_110778_110877;chr2L_111005_111037 41.67 NA NA 38.46 NA NA 52.00 46.67 47.83 NA NA 50.00 NA NA 28.57 38.89 NA 20.00 NA 47.06 NA 13.04 44.44 33.33 NA NA 25.00 30.43 30.77 NA 54.55 NA NA 46.15 41.67 26.67 38.46 41.67 46.67 63.64 NA 38.46 NA 63.64 NA NA NA 58.33 60.00 42.86 33.33 NA NA NA NA NA NA NA K alternative_acceptor CG15715,RI_chr3L_15829349_15830356,I_chr3L_15830026_15830356,RI_chr3L_15830030_15830191,RI_chr3L_15830229_15830356 chr3L - chr3L_15830229_15830356;chr3L_15830030_15830356 chr3L_15830026_15830356 chr3L_15830357_15830456;chr3L_15830007_15830025 0.00 0.00 3.12 0.00 0.00 5.26 3.33 0.00 2.38 7.14 7.14 0.00 0.00 0.00 0.00 4.35 0.00 0.00 3.45 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 4.00 4.76 6.90 8.00 0.00 5.56 0.00 0.00 0.00 0.00 2.78 0.00 6.67 1.49 0.00 0.00 5.26 3.45 3.23 0.00 5.41 0.00 0.00 K jcn_only_AD CG4239,I_chrX_16279725_16280317 chrX + chrX_16279721_16281003;chrX_16279725_16281003 chrX_16279372_16281003 chrX_16281004_16281322;chrX_16279353_16279371 77.36 76.92 92.59 92.31 75.86 75.00 70.59 86.96 71.01 NA 36.36 86.11 68.18 82.61 65.71 78.12 91.30 72.73 77.14 71.83 40.74 98.11 84.13 85.11 82.86 75.00 88.41 75.00 71.43 75.00 NA 72.00 65.22 90.32 84.85 88.46 74.07 78.18 76.71 87.64 NA 77.92 72.00 79.41 NA 84.38 84.85 NA 81.74 90.91 77.36 83.33 84.62 69.57 69.44 75.56 65.00 NA K alternative_donor pr-set7 chr3R + chr3R_10142094_10142198;chr3R_10142103_10142198 chr3R_10142132_10142198 chr3R_10142199_10142589;chr3R_10142068_10142093 15.48 NA NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 14.29 NA NA NA NA NA NA NA NA NA K jcn_only_AD pelo,I_chr2L_9707821_9708144,I_chr2L_9707891_9708144,I_chr2L_9708081_9708144 chr2L + chr2L_9707891_9708144;chr2L_9708081_9708144;chr2L_9706747_9708144 chr2L_9707821_9708144 chr2L_9708145_9708244;chr2L_9706647_9706746 1.72 0.00 1.82 1.77 4.00 2.38 0.00 0.00 0.79 1.75 6.25 1.80 0.00 1.43 0.00 0.00 2.08 5.36 0.00 4.76 0.00 3.23 2.27 2.22 1.19 1.41 2.02 1.56 0.00 3.08 1.72 0.00 0.00 2.50 1.39 4.76 2.41 0.00 0.00 3.39 4.67 0.96 0.00 1.41 4.55 0.85 1.30 3.23 1.82 3.45 2.08 1.79 1.15 0.00 2.30 1.19 1.89 1.34 K intron_retention CG17233,I_chr3L_20232803_20232962,RI_chr3L_20232898_20232962 chr3L - chr3L_20232714_20232962 chr3L_20232713_20232714;chr3L_20232962_20232963 chr3L_20232703_20232713;chr3L_20232963_20233016 14.29 30.77 12.50 6.45 NA NA 35.29 31.82 23.68 NA NA 16.67 NA NA 23.53 35.71 NA 20.00 NA 16.67 NA 11.11 4.55 4.55 25.00 NA 26.09 46.15 11.76 20.00 NA 14.29 0.00 15.79 7.69 NA 9.30 12.50 8.70 33.33 12.50 10.71 NA 14.29 NA NA NA 4.55 17.39 12.50 26.32 NA 17.65 NA 25.00 7.69 11.76 0.00 K jcn_only_AD I_chr3L_7374787_7375310,smid,I_chr3L_7375166_7375310,I_chr3L_7375435_7375508 chr3L + chr3L_7375166_7375310;chr3L_7375255_7375310 chr3L_7375112_7375310 chr3L_7375311_7375410;chr3L_7375066_7375111 96.94 95.38 97.06 97.18 98.21 100.00 97.67 95.00 96.75 96.61 88.57 97.06 96.92 92.75 97.14 98.50 100.00 97.53 98.51 96.94 95.65 98.11 97.26 95.45 96.49 93.94 98.89 95.71 88.14 100.00 100.00 94.64 98.28 96.26 96.55 96.43 97.86 92.75 98.95 94.41 93.18 96.00 100.00 96.55 100.00 94.37 97.67 94.68 98.35 93.65 96.84 96.40 98.18 97.87 97.18 97.47 96.15 97.47 K intron_retention NaCP60E,I_chr2R_20798977_20799775,I_chr2R_20805053_20805170 chr2R + chr2R_20802533_20802636 chr2R_20802532_20802533;chr2R_20802636_20802637 chr2R_20802297_20802532;chr2R_20802637_20802745 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention CG1832,I_chr2L_22168644_22168740 chr2L - chr2L_22168067_22168119 chr2L_22168066_22168067;chr2L_22168119_22168120 chr2L_22167637_22168066;chr2L_22168120_22168320 0.00 0.00 0.00 0.77 0.00 0.00 1.61 0.91 0.29 0.00 0.00 1.46 0.00 0.00 1.11 1.24 0.00 0.00 0.99 0.28 0.00 0.00 0.00 0.00 0.00 0.55 1.41 1.85 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.34 0.90 0.00 0.00 0.00 1.26 0.70 0.00 0.00 0.00 0.00 0.00 1.46 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 K intron_retention Cyp4e2,Cyp4e1 chr2R + chr2R_4332973_4333038 chr2R_4332972_4332973;chr2R_4333038_4333039 chr2R_4332863_4332972;chr2R_4333039_4333388 0.00 0.00 1.61 1.94 0.00 0.00 0.88 0.66 1.31 0.00 0.00 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.55 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 5.26 0.00 1.15 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 2.78 0.00 K intron_retention CG5027 chr3L + chr3L_16223425_16223481 chr3L_16223424_16223425;chr3L_16223481_16223482 chr3L_16222801_16223424;chr3L_16223482_16224290 0.00 0.00 0.00 9.43 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 7.14 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 NA 0.00 0.00 0.00 0.00 K alternative_acceptor Galpha49B,I_chr2R_8501587_8501648,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500390_8501759;chr2R_8500390_8501071 chr2R_8500390_8501648 chr2R_8500380_8500389;chr2R_8501760_8501850 11.11 16.67 12.50 8.70 NA 22.22 6.67 8.57 4.65 0.00 16.67 9.43 11.11 16.00 0.00 4.44 5.56 18.18 9.52 8.70 0.00 9.09 0.00 23.08 16.67 11.11 13.33 16.67 28.57 10.00 11.11 0.00 22.22 12.82 20.00 7.69 14.29 33.33 11.11 4.17 25.00 7.14 15.00 15.38 33.33 17.65 16.67 10.00 12.82 14.29 10.53 7.69 0.00 0.00 6.25 0.00 14.29 18.18 K intron_retention CG34415 chr2R - chr2R_12839256_12840108 chr2R_12839255_12839256;chr2R_12840108_12840109 chr2R_12838247_12839255;chr2R_12840109_12840109 16.67 11.11 17.65 19.23 46.15 14.29 33.33 19.35 21.21 NA 38.46 19.35 16.67 20.00 15.00 12.50 30.77 25.00 29.41 16.67 NA NA NA 0.00 NA 9.09 0.00 NA 0.00 0.00 17.65 NA 4.35 24.00 NA NA NA 9.09 16.67 8.33 NA 24.44 29.41 0.00 NA NA NA 0.00 22.22 21.43 16.67 21.05 NA NA 13.04 NA NA 0.00 K intron_retention 14-3-3epsilon,I_chr3R_14068632_14073155,RI_chr3R_14074062_14074138,I_chr3R_14074016_14074138 chr3R + chr3R_14073874_14073939 chr3R_14073873_14073874;chr3R_14073939_14073940 chr3R_14073693_14073873;chr3R_14073940_14074015 3.05 0.89 0.00 2.55 1.72 2.92 1.09 2.67 3.59 0.00 1.98 3.42 3.33 5.93 4.84 2.54 2.44 2.04 2.88 2.74 0.00 2.37 3.81 3.12 2.63 0.00 6.06 13.83 10.28 3.42 2.13 7.69 3.15 4.37 3.14 4.88 2.13 3.12 2.78 4.05 3.94 3.32 0.00 1.64 4.81 5.46 3.25 7.06 2.82 3.05 4.76 3.39 1.65 2.87 5.04 2.86 2.24 7.22 K jcn_only_AD CEI_chrX_17177009_17196871,CG5445,I_chrX_17196752_17196871,RI_chrX_17196772_17196871,I_chrX_17196820_17196875,I_chrX_17198393_17198730 chrX + chrX_17196681_17196871;chrX_17196546_17196871;chrX_17196541_17196871;chrX_17196617_17196871 chrX_17196820_17196871 chrX_17196872_17196971;chrX_17196536_17196540 84.41 91.67 76.19 NA NA NA 90.91 63.64 69.81 NA NA 77.27 NA NA NA 73.08 NA 76.19 84.38 67.21 NA 88.37 73.33 82.14 NA 85.00 92.00 78.26 86.67 NA NA NA 80.77 60.87 NA NA 87.50 NA 95.45 85.37 90.00 58.62 80.00 85.71 NA 90.91 84.38 84.44 66.67 85.19 83.33 95.45 96.15 90.00 NA 81.82 86.36 88.89 K jcn_only_AA CG32103,I_chr3L_12398261_12403200 chr3L - chr3L_12398261_12405110 chr3L_12404839_12405110 chr3L_12405111_12405222 2.04 0.00 0.00 0.00 0.00 0.00 1.82 2.04 0.00 4.55 0.00 8.22 3.03 2.86 1.96 0.00 0.00 0.00 0.00 0.00 0.00 8.45 2.90 3.85 1.96 0.00 0.00 4.88 0.00 3.85 0.00 2.78 3.45 0.00 4.44 7.84 3.33 4.00 5.08 6.17 2.17 1.32 0.00 1.96 7.41 7.32 0.00 13.33 0.00 0.00 2.60 2.86 6.45 2.38 4.76 3.12 0.00 2.08 N alternative_donor mei-9 chrX - chrX_4208761_4208856 chrX_4208761_4208849 chrX_4208622_4208760;chrX_4208857_4209826 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 25.00 NA NA NA NA NA NA NA NA 35.71 NA NA 14.29 15.38 NA 25.00 NA 41.67 NA NA NA NA NA NA 36.36 40.00 K intron_retention CG12159 chr2R - chr2R_3802688_3802899 chr2R_3802687_3802688;chr2R_3802899_3802900 chr2R_3802545_3802687;chr2R_3802900_3803026 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Fit1,noncoding_10535,Ack chr3L + chr3L_4104119_4110497 chr3L_4104118_4104119;chr3L_4110497_4110498 chr3L_4103647_4104118;chr3L_4110498_4110683 61.54 72.73 77.78 75.00 NA NA 68.75 61.11 65.38 NA NA 50.00 60.00 66.67 72.22 90.91 77.78 88.89 81.25 51.72 60.00 45.45 55.00 NA 55.56 66.67 75.00 NA 50.00 36.36 NA NA 82.35 75.00 NA 53.85 54.55 NA 63.64 53.57 60.00 82.61 NA 44.00 57.14 64.71 60.00 36.84 63.33 NA 75.00 45.45 25.00 61.54 61.54 88.89 57.14 64.29 K intron_retention Cirl,R_chr2R_4502755_4503407,E_chr2R_4505783_4507316 chr2R + chr2R_4505967_4506035 chr2R_4505966_4505967;chr2R_4506035_4506036 chr2R_4505739_4505966;chr2R_4506036_4506234 23.53 23.53 NA 24.00 NA NA 15.00 15.79 15.38 NA NA 19.23 NA NA 26.67 15.38 15.38 NA NA 25.81 36.36 33.33 36.36 15.38 19.05 NA 33.33 29.41 21.43 17.39 NA NA 19.05 25.00 10.53 33.33 15.79 18.18 24.14 20.00 26.67 12.50 NA 21.74 26.67 26.67 21.05 41.67 29.41 25.00 18.52 29.41 33.33 25.00 23.53 31.25 23.08 14.29 K intron_retention l(1)G0255,CG4095 chrX + chrX_6574532_6574600 chrX_6574531_6574532;chrX_6574600_6574601 chrX_6574331_6574531;chrX_6574601_6575405 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 K intron_retention CG2247 chrX - chrX_11501989_11502046 chrX_11501988_11501989;chrX_11502046_11502047 chrX_11500483_11501988;chrX_11502047_11502185 0.00 0.00 0.00 11.76 0.00 0.00 3.23 0.00 8.51 5.56 0.00 6.67 5.00 NA 0.00 0.00 11.76 0.00 0.00 4.62 0.00 0.00 8.51 5.41 5.56 0.00 12.12 8.70 7.41 0.00 4.76 0.00 0.00 5.26 6.90 16.67 2.00 0.00 0.00 5.41 0.00 8.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 K intron_retention CG17184 chr3R - chr3R_7058849_7058938 chr3R_7058848_7058849;chr3R_7058938_7058939 chr3R_7058551_7058848;chr3R_7058939_7059046 0.00 1.87 0.00 2.50 0.00 0.00 2.54 0.65 1.73 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 1.60 2.27 0.00 0.00 4.31 1.85 11.63 4.65 1.96 0.00 0.00 2.10 0.00 0.00 1.82 2.91 0.74 2.50 0.00 1.04 0.00 0.00 0.00 3.39 4.85 0.00 2.38 0.00 1.38 0.00 2.04 0.00 0.00 0.83 0.97 0.00 K cassette babo chr2R + chr2R_4842357_4843217;chr2R_4842357_4846611 chr2R_4842357_4842463;chr2R_4842673_4846611,chr2R_4842673_4843217 chr2R_4842464_4842672 chr2R_4842239_4842356;chr2R_4846612_4846839 14.29 23.53 20.00 11.11 17.65 15.79 22.73 7.14 18.42 11.76 17.65 29.41 10.53 13.33 26.67 20.00 50.00 14.29 11.11 12.12 20.00 8.70 20.59 14.81 11.76 11.11 13.79 10.53 14.29 16.00 10.00 NA 17.65 17.65 30.77 14.29 12.50 15.38 7.69 5.71 NA 18.60 6.25 9.09 NA 16.67 7.69 18.18 20.00 0.00 9.52 4.00 NA NA 25.00 7.69 NA NA K jcn_only_AD del chr2L - chr2L_21146886_21146948 chr2L_21146886_21146939 chr2L_21145134_21146885;chr2L_21146949_21147823 48.65 51.22 53.66 48.84 56.25 48.65 51.85 45.95 49.23 NA 46.67 56.52 41.03 58.33 44.12 41.56 50.00 42.31 43.90 42.86 32.26 50.00 44.68 37.84 29.63 47.06 45.76 33.33 23.33 60.53 52.31 47.62 43.33 59.76 45.16 72.22 50.00 56.25 51.28 49.09 NA 60.53 53.85 53.70 43.48 40.62 55.17 58.62 43.42 42.86 46.15 33.33 68.00 76.92 48.08 44.00 50.00 52.38 K intron_retention CG3797,I_chr3L_19054399_19054486 chr3L - chr3L_19053324_19053384 chr3L_19053323_19053324;chr3L_19053384_19053385 chr3L_19052869_19053323;chr3L_19053385_19054398 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.03 99.14 100.00 100.00 99.08 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 K intron_retention CG13923,CG12022 chr3L + chr3L_1803568_1805009 chr3L_1803567_1803568;chr3L_1805009_1805010 chr3L_1803433_1803567;chr3L_1805010_1805458 7.42 NA NA 13.33 NA NA 10.53 NA 27.78 NA NA NA NA NA NA NA NA NA NA 7.14 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 5.00 NA 7.69 NA NA NA NA NA NA NA NA 5.00 NA NA 20.00 NA NA NA NA K alternative_donor dorsal,RI_chr2L_17438018_17439189,FI_chr2L_17449369_17450215,noncoding_3500,RI_chr2L_17450002_17450219 chr2L - chr2L_17449369_17450325;chr2L_17449369_17449875;chr2L_17449369_17450219;chr2L_17449369_17450215 chr2L_17449369_17450310 chr2L_17449296_17449368;chr2L_17450326_17450359 3.12 0.00 5.26 4.84 10.00 3.12 3.39 2.67 7.04 6.67 0.00 1.54 6.45 5.41 0.00 3.75 6.67 0.00 4.65 3.90 6.25 8.11 0.00 0.00 0.00 5.71 0.00 0.00 6.67 2.63 2.86 0.00 5.66 3.66 0.00 0.00 0.00 0.00 0.00 2.99 6.12 2.38 5.88 3.45 6.45 4.17 0.00 3.74 2.27 0.00 3.70 4.76 0.00 0.00 4.17 0.00 0.00 3.17 N cassette JhI-21,I_chr2L_12055360_12055714 chr2L - chr2L_12054499_12055901 chr2L_12054499_12055084;chr2L_12055334_12055901 chr2L_12055085_12055333 chr2L_12054303_12054498;chr2L_12055902_12055978 100.00 100.00 100.00 94.42 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG14803,CG14805 chrX + chrX_1763261_1763330 chrX_1763276_1763330 chrX_1763331_1763911;chrX_1762927_1763260 100.00 NA 100.00 92.31 100.00 100.00 100.00 100.00 100.00 NA NA 94.12 NA NA 90.00 100.00 NA NA NA 100.00 NA 100.00 100.00 92.31 100.00 100.00 100.00 NA NA 91.67 NA NA 100.00 100.00 87.50 100.00 91.67 100.00 93.33 100.00 NA 94.44 NA 90.91 100.00 100.00 85.71 95.83 100.00 NA 100.00 91.67 NA NA 100.00 NA 100.00 100.00 K jcn_only_AD l(1)G0193 chrX - chrX_7837261_7837716;chrX_7837261_7837749 chrX_7837261_7839928 chrX_7836542_7837260 65.22 66.85 63.50 69.78 67.38 64.33 60.05 60.47 64.83 70.06 55.56 65.09 64.17 65.02 67.39 58.47 67.33 65.13 67.89 62.27 66.43 67.90 70.04 72.45 68.77 63.26 68.63 62.67 69.87 70.57 55.26 59.02 73.75 63.69 70.56 69.55 69.89 74.55 75.39 64.88 56.25 63.48 61.24 60.83 64.46 65.22 74.88 48.66 62.65 76.76 64.72 66.91 75.39 67.74 61.24 68.89 78.65 60.19 K intron_retention Arf72A chr3L + chr3L_15976381_15976477 chr3L_15976380_15976381;chr3L_15976477_15976478 chr3L_15976110_15976380;chr3L_15976478_15976694 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 3.19 6.12 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA flfl,EI_chr3R_9513221_9513291,CG14367 chr3R + chr3R_9515908_9515995 chr3R_9515908_9515974 chr3R_9515635_9515907;chr3R_9515996_9516108 84.76 86.46 90.79 66.67 85.29 90.48 74.23 72.73 84.76 86.08 87.76 84.85 88.71 85.71 80.56 82.88 90.91 81.03 80.00 83.65 91.84 91.81 87.64 85.27 83.87 91.94 78.63 71.43 81.13 94.03 85.71 81.08 79.07 86.21 87.67 75.64 82.71 83.51 88.33 84.93 74.42 82.47 94.55 80.00 88.64 86.15 84.00 81.82 84.11 83.87 83.64 82.35 87.10 84.00 90.80 89.55 91.67 83.53 K intron_retention Pitslre,I_chr3L_20764965_20765781,I_chr3L_20764965_20766192,I_chr3L_20764965_20766212,I_chr3L_20766064_20766192,I_chr3L_20766064_20766215,RI_chr3L_20766064_20766893,I_chr3L_20766311_20766664,I_chr3L_20766311_20766893,I_chr3L_20766773_20766893 chr3L + chr3L_20764965_20765704 chr3L_20764964_20764965;chr3L_20765704_20765705 chr3L_20764896_20764964;chr3L_20765705_20766070 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2393243 chrX_2387249_2387583;chrX_2387710_2388436;chrX_2388671_2393243 chrX_2387584_2387709;chrX_2388437_2388670 chrX_2387149_2387248;chrX_2393244_2393291 35.41 NA NA NA NA NA NA 42.86 44.44 NA NA 12.20 NA NA 33.33 NA NA NA 33.33 33.33 NA NA NA NA NA NA NA NA NA NA NA NA 22.22 42.86 NA 4.35 11.11 NA NA 17.65 NA 42.86 NA 37.50 NA NA NA 44.44 37.50 NA NA NA NA NA 50.00 NA NA NA N multi_cassette Nos,I_chr2L_10826086_10826539 chr2L - chr2L_10804897_10812286 chr2L_10804897_10805618;chr2L_10805744_10805984;chr2L_10807128_10812286 chr2L_10805619_10805743;chr2L_10805985_10807127 chr2L_10804830_10804896;chr2L_10812287_10812302 100.00 NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA 73.33 100.00 100.00 NA NA 50.00 NA 60.00 100.00 NA 66.67 100.00 NA 100.00 NA NA 100.00 NA NA 100.00 NA NA 100.00 66.67 100.00 100.00 50.00 NA NA 100.00 NA NA 50.00 NA 100.00 NA NA K jcn_only_AD CG3337,I_chr3R_17048917_17048974 chr3R - chr3R_17048917_17048978 chr3R_17048917_17048974 chr3R_17048817_17048916;chr3R_17048979_17049074 0.00 0.00 0.00 4.00 0.00 0.00 0.00 3.03 2.08 NA NA 0.00 NA NA 0.00 NA NA NA 0.00 0.00 4.00 NA 2.86 2.38 0.00 0.00 0.00 NA 0.00 5.00 NA NA 2.70 0.00 NA 3.70 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.70 0.00 0.00 1.92 NA 0.00 3.85 2.04 NA 3.03 2.44 NA 3.33 0.00 4.00 N alternative_donor CG32529 chrX + chrX_19795522_19795900;chrX_19795687_19795900 chrX_19795641_19795900 chrX_19795901_19798251;chrX_19794649_19795521 1.23 1.23 0.55 1.54 0.60 1.31 1.90 1.24 0.80 0.00 2.02 0.58 1.24 1.27 1.23 1.70 1.56 0.51 0.73 0.92 1.42 9.48 1.11 1.49 0.59 1.25 1.67 1.69 2.16 1.71 1.05 1.14 1.38 0.89 1.67 1.14 0.68 0.81 0.90 0.81 2.41 0.96 0.81 0.63 1.72 0.90 1.82 1.32 0.73 1.56 1.24 0.64 0.00 1.25 1.09 1.50 0.98 0.00 K intron_retention Pde11,I_chr2L_18539674_18540627 chr2L - chr2L_18534460_18534517 chr2L_18534459_18534460;chr2L_18534517_18534518 chr2L_18534220_18534459;chr2L_18534518_18534601 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Sk1 chrX + chrX_11336654_11337599;chrX_11336742_11337599 chrX_11336791_11337599 chrX_11337600_11340043;chrX_11336565_11336653 16.67 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA 16.67 NA 7.14 NA NA NA NA NA NA NA NA NA NA 33.33 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA NA NA K intron_retention CG2478,I_chr2L_20653491_20653552 chr2L - chr2L_20652339_20652400 chr2L_20652338_20652339;chr2L_20652400_20652401 chr2L_20652145_20652338;chr2L_20652401_20652885 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD CG6199 chr3L - chr3L_11196773_11198004 chr3L_11196773_11197305 chr3L_11196633_11196772;chr3L_11198005_11198090 42.25 36.00 34.09 23.44 30.12 39.74 57.47 25.81 33.33 71.43 57.69 41.29 31.71 33.33 39.81 27.00 32.53 40.45 31.07 35.04 49.12 64.71 48.05 38.46 43.24 48.57 55.13 86.21 65.00 50.00 70.09 58.82 31.03 33.33 41.30 58.49 50.68 66.67 47.83 50.00 59.09 32.16 41.11 42.25 72.09 63.75 53.33 61.86 33.57 46.77 50.57 46.34 0.00 41.38 31.25 36.21 51.52 27.27 K cassette CycG,I_chr3R_27427946_27436602,I_chr3R_27427953_27429034,I_chr3R_27427953_27431334,RE_chr3R_27427953_27436598 chr3R - chr3R_27427953_27436602 chr3R_27427953_27428792;chr3R_27428796_27436602 chr3R_27428793_27428795 chr3R_27427853_27427952;chr3R_27436603_27436698 4.80 3.16 3.03 6.61 3.46 3.18 2.77 3.57 3.15 8.29 2.10 3.21 5.13 5.45 3.21 4.64 2.99 3.85 3.51 4.78 1.63 14.48 7.34 11.11 10.26 4.46 7.80 10.04 6.52 13.47 4.66 4.40 6.76 4.33 5.88 32.35 8.15 3.81 7.73 9.66 7.81 4.11 5.36 3.14 4.80 5.49 6.33 5.08 2.42 8.77 10.11 4.44 3.49 9.38 2.68 4.81 11.00 2.73 K intron_retention MB8.chr3R.pasa.66,CG1142,snoRNA:MeU5-C46 chr3R - chr3R_3298570_3298982 chr3R_3298569_3298570;chr3R_3298982_3298983 chr3R_3298176_3298569;chr3R_3298983_3299645 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 NA 4.00 0.00 0.00 0.00 2.78 2.04 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 6.25 5.88 2.56 0.00 2.17 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 2.86 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.85 K intron_retention CG5958 chr2L - chr2L_7433212_7433405 chr2L_7433211_7433212;chr2L_7433405_7433406 chr2L_7432937_7433211;chr2L_7433406_7433586 0.79 0.00 0.00 1.30 0.00 0.00 5.11 0.00 1.07 0.00 0.00 0.00 0.82 0.00 0.00 1.87 0.00 2.20 1.11 0.52 2.30 0.00 1.53 2.41 0.00 5.00 1.82 2.13 4.26 0.00 0.00 0.00 4.26 1.47 2.70 7.95 1.57 1.00 0.00 0.00 11.11 2.21 0.00 2.33 0.00 0.00 0.00 0.00 2.11 0.36 0.79 0.00 1.03 0.00 0.00 2.54 0.98 3.39 K alternative_donor Slip1,RI_chr4_684967_689045,I_chr4_685717_686576,RI_chr4_685717_689045,RI_chr4_687548_689045 chr4 + chr4_687548_689045 chr4_687559_689045 chr4_689046_689145;chr4_687448_687547 100.00 100.00 100.00 96.00 93.33 100.00 100.00 97.06 96.30 NA 100.00 97.44 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 94.12 96.15 96.00 100.00 95.24 100.00 100.00 100.00 94.12 95.65 100.00 93.75 97.73 91.67 100.00 100.00 95.00 100.00 100.00 NA 97.87 100.00 100.00 100.00 95.00 95.24 100.00 97.62 100.00 100.00 100.00 100.00 100.00 93.75 100.00 92.00 100.00 K alternative_acceptor CG3632,RI_chrX_16195880_16196242 chrX + chrX_16190824_16191693 chrX_16190824_16191682 chrX_16190763_16190823;chrX_16191694_16191751 23.61 NA NA 14.29 NA NA 33.33 17.65 21.05 NA NA 28.57 NA NA NA 15.00 NA NA 36.36 14.29 NA NA NA NA NA NA 45.45 NA NA NA NA NA NA 25.00 NA NA 33.33 NA NA NA NA 19.05 NA NA NA NA NA NA 22.22 NA 40.00 NA NA NA NA NA NA NA K intron_retention cv-c,RI_chr3R_10258928_10265129,RI_chr3R_10301040_10306363,RI_chr3R_10306635_10307255 chr3R - chr3R_10221478_10221596 chr3R_10221477_10221478;chr3R_10221596_10221597 chr3R_10219833_10221477;chr3R_10221597_10221748 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA stc chr2L + chr2L_15114235_15114311 chr2L_15114235_15114299 chr2L_15113511_15114234;chr2L_15114312_15115753 95.12 90.48 96.00 97.96 NA 88.46 91.67 95.83 92.86 96.30 100.00 100.00 88.24 100.00 95.24 96.55 86.96 93.55 95.83 96.20 96.00 95.24 95.12 98.00 95.24 90.32 94.83 87.80 93.50 94.74 90.00 100.00 95.92 93.02 100.00 93.33 94.74 96.00 95.92 93.75 100.00 96.15 96.15 92.50 96.88 98.36 90.00 93.81 95.12 90.91 94.23 92.86 89.66 NA 93.18 96.30 87.50 95.52 K intron_retention CG7745 chr2R + chr2R_7195603_7195660 chr2R_7195602_7195603;chr2R_7195660_7195661 chr2R_7195353_7195602;chr2R_7195661_7197045 9.52 11.11 8.70 13.79 16.67 15.38 7.41 11.43 9.30 NA 0.00 7.32 NA NA 0.00 0.00 NA 0.00 15.79 6.90 11.76 23.53 10.34 9.52 18.75 27.78 22.22 46.15 21.21 8.51 6.67 7.41 7.14 8.89 10.34 10.34 12.50 4.76 12.50 17.50 31.03 9.76 NA 4.35 6.90 18.52 19.05 9.52 7.41 6.67 14.29 NA 0.00 NA 0.00 5.88 0.00 3.77 K intron_retention CG8600,eco chr3L - chr3L_7327570_7327641 chr3L_7327569_7327570;chr3L_7327641_7327642 chr3L_7327490_7327569;chr3L_7327642_7327709 0.00 0.00 0.00 0.00 0.00 3.45 0.00 4.35 0.00 0.00 0.00 3.39 12.50 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 1.74 0.00 0.00 4.88 7.81 0.00 1.28 0.00 0.00 0.00 0.00 0.00 1.39 1.09 0.00 1.38 0.00 0.00 5.48 0.00 1.32 0.00 0.72 2.44 0.79 0.00 0.95 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention babo chr2R + chr2R_4842357_4846611 chr2R_4842356_4842357;chr2R_4846611_4846612 chr2R_4842239_4842356;chr2R_4846612_4846839 33.33 NA 40.00 33.33 37.50 27.78 54.84 30.43 48.65 NA NA 75.00 29.41 NA 63.64 63.16 69.23 36.36 40.00 75.00 58.33 23.08 41.67 39.29 33.33 29.41 32.00 17.65 NA 23.81 25.00 NA NA 60.87 NA NA 26.92 29.41 22.22 21.43 NA 42.11 43.75 29.63 NA NA NA 29.41 42.42 14.29 32.14 31.82 NA NA 42.11 NA NA NA K intron_retention CG6115 chr2L - chr2L_16887678_16887792 chr2L_16887677_16887678;chr2L_16887792_16887793 chr2L_16887062_16887677;chr2L_16887793_16887941 0.74 0.44 0.00 3.70 0.00 0.00 0.00 0.64 0.80 0.00 0.00 1.08 0.74 0.58 0.38 0.65 0.00 0.00 0.43 0.92 0.52 1.95 0.28 0.26 1.09 0.87 2.62 4.60 9.52 0.00 0.86 0.00 0.00 0.92 0.53 2.27 0.73 0.41 1.19 0.85 3.57 1.03 0.00 0.93 1.61 1.02 0.00 1.89 1.17 0.82 1.11 0.00 0.77 0.00 1.42 0.32 0.79 1.15 K jcn_only_AA I_chr2L_13965397_13965694,RI_chr2L_13967695_13967746,nimB4 chr2L - chr2L_13969445_13969618 chr2L_13969461_13969618 chr2L_13969619_13969964;chr2L_13968897_13969444 99.59 98.44 100.00 100.00 100.00 100.00 100.00 98.51 99.59 NA 98.61 97.53 99.26 100.00 100.00 97.01 98.63 97.47 100.00 100.00 100.00 94.59 94.44 100.00 100.00 96.59 98.39 NA 100.00 96.30 81.13 100.00 100.00 100.00 100.00 97.37 98.82 100.00 98.57 95.24 96.88 98.80 98.36 100.00 97.56 100.00 100.00 100.00 98.31 99.17 100.00 96.30 100.00 100.00 100.00 100.00 98.80 97.40 K intron_retention CG14667 chr3R + chr3R_1201647_1201708 chr3R_1201646_1201647;chr3R_1201708_1201709 chr3R_1201000_1201646;chr3R_1201709_1201822 0.00 0.00 0.00 8.33 0.00 0.00 0.00 3.23 2.17 NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 4.65 0.00 NA 7.41 0.00 NA NA 8.33 0.00 10.53 NA 0.00 0.00 0.00 8.33 NA 11.11 0.00 0.00 0.00 0.00 NA 3.45 0.00 0.00 NA 0.00 0.00 10.53 2.70 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 K intron_retention raw,I_chr2L_8712599_8712673,I_chr2L_8735201_8735693 chr2L - chr2L_8735201_8735693 chr2L_8735200_8735201;chr2L_8735693_8735694 chr2L_8735101_8735200;chr2L_8735694_8735747 92.31 NA NA 93.33 NA NA 92.31 87.50 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA NA 90.91 93.33 NA 90.91 93.75 92.31 90.91 NA NA 100.00 NA NA 100.00 NA NA 100.00 90.00 88.89 90.91 90.00 NA 87.50 NA 91.67 NA 70.00 NA NA NA 100.00 90.00 90.91 93.33 100.00 NA NA 100.00 87.50 NA NA K intron_retention CG32795,RI_chrX_2677454_2677799,I_chrX_2677459_2682526,I_chrX_2677729_2677799,I_chrX_2679163_2681784 chrX - chrX_2677459_2677799 chrX_2677458_2677459;chrX_2677799_2677800 chrX_2677453_2677458;chrX_2677800_2677899 1.51 4.35 NA NA NA 0.00 15.79 5.56 15.38 13.33 NA 5.71 NA 0.00 13.33 7.69 NA NA NA 0.00 NA 14.29 NA 0.00 NA 11.76 NA NA NA 0.00 11.76 NA 0.00 5.00 NA NA 0.00 0.00 0.00 9.52 0.00 7.89 NA 0.00 0.00 6.45 0.00 0.00 0.00 0.00 0.00 NA 7.41 0.00 0.00 9.09 4.55 3.03 K intron_retention l(2)NC136,I_chr2R_1545723_1546024 chr2R - chr2R_1545087_1545147 chr2R_1545086_1545087;chr2R_1545147_1545148 chr2R_1544877_1545086;chr2R_1545148_1545722 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 1.03 0.00 0.00 0.00 0.00 1.37 1.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 4.72 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_last_exon Clc,CG6951 chr3L + chr3L_20234785_20237264 chr3L_20234785_20235884 chr3L_20237265_20237677 chr3L_20235885_20236927 chr3L_20234707_20234784 33.33 14.29 71.43 54.17 14.29 14.29 28.57 59.26 14.29 28.57 33.33 69.23 25.00 16.67 12.50 78.26 25.00 12.50 12.50 72.73 14.29 14.29 70.00 71.43 20.00 16.67 14.29 90.00 33.33 20.00 11.11 84.62 33.33 11.11 66.67 20.00 73.68 72.22 75.00 74.07 92.11 68.57 20.00 25.00 33.33 85.29 14.29 86.67 64.29 65.22 14.29 20.00 16.67 66.67 56.25 70.00 11.11 87.50 K jcn_only_AA Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046104;chr3L_16045251_16046129;chr3L_16045251_16046108;chr3L_16045251_16046111 chr3L_16045251_16045854 chr3L_16045216_16045250;chr3L_16046130_16046204 19.05 14.63 16.67 12.38 17.86 9.09 24.66 14.29 16.83 18.92 40.00 13.40 23.08 20.00 15.19 25.81 19.35 36.67 11.25 20.31 32.69 13.64 20.25 32.65 32.61 14.93 20.90 40.48 17.24 11.63 19.05 5.13 19.39 20.00 16.67 28.30 22.50 20.00 27.27 19.05 7.14 19.47 18.46 21.82 9.09 18.64 16.13 13.93 17.76 19.05 25.86 39.29 26.92 NA 17.95 9.09 33.33 6.06 K alternative_acceptor CG10981 chr3R + chr3R_1650698_1650778;chr3R_1650698_1650757 chr3R_1650698_1650754 chr3R_1650443_1650697;chr3R_1650779_1651166 25.00 33.33 7.69 25.00 NA 18.18 25.00 20.83 28.00 NA NA 21.74 21.43 22.22 45.45 20.83 9.09 33.33 12.50 25.64 33.33 30.00 23.81 23.53 41.67 28.57 28.57 25.00 60.00 40.00 33.33 25.00 22.22 20.00 23.08 25.00 NA 21.43 14.29 14.29 NA 19.23 NA 25.00 NA 25.00 30.77 66.67 30.77 21.05 16.67 NA 11.76 14.29 25.00 23.08 15.00 44.44 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2393243;chrX_2393712_2394269;chrX_2394396_2395151;chrX_2395275_2395659 chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664;chrX_2393244_2393711;chrX_2394270_2394395;chrX_2395152_2395274 chrX_2387149_2387248;chrX_2395660_2395759 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention CG14667 chr3R + chr3R_1201823_1201878 chr3R_1201822_1201823;chr3R_1201878_1201879 chr3R_1201709_1201822;chr3R_1201879_1202153 0.00 NA 0.00 3.57 NA NA 0.00 0.00 0.00 NA NA 4.76 NA NA 0.00 0.00 0.00 0.00 0.00 3.12 NA NA 11.11 0.00 NA NA 4.76 NA NA NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 4.35 0.00 NA 0.00 0.00 15.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention Pak,RI_chr3R_2181143_2181934 chr3R + chr3R_2181143_2182154 chr3R_2181142_2181143;chr3R_2182154_2182155 chr3R_2181043_2181142;chr3R_2182155_2182320 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 4.49 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CE_chrX_20766225_20927825,CG1529,RI_chrX_20902550_20902613 chrX - chrX_20902550_20902613 chrX_20902561_20902613 chrX_20902614_20902713;chrX_20902450_20902549 22.50 12.50 16.67 33.33 36.11 25.00 23.26 22.50 25.76 20.00 12.90 22.00 45.45 28.00 20.00 21.43 20.00 22.73 20.69 20.69 10.81 28.92 31.25 21.31 20.69 21.62 19.15 26.92 20.51 20.00 65.38 34.38 22.50 45.00 25.00 17.65 23.60 28.30 23.53 26.92 20.00 20.00 47.62 21.43 18.87 45.16 18.18 26.98 20.97 28.57 23.08 23.33 21.05 17.86 30.00 22.22 19.61 24.49 N jcn_only_AA CHES-1-like,I_chrX_7584030_7588818 chrX - chrX_7584030_7590509 chrX_7588919_7590509 chrX_7590510_7590564;chrX_7583930_7584029 0.00 NA NA 0.00 NA NA 36.84 0.00 32.35 NA NA NA NA NA NA 37.50 NA NA 32.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor Ate1 chr2R - chr2R_16144114_16144194 chr2R_16144135_16144194 chr2R_16144195_16144252;chr2R_16143941_16144113 4.71 8.51 4.65 20.45 0.00 0.00 14.81 2.04 3.75 0.00 9.68 6.90 5.88 3.85 3.12 4.88 3.57 6.45 5.00 5.19 7.89 5.88 3.77 2.67 4.17 13.16 5.48 3.85 6.35 5.19 5.56 6.90 10.64 1.82 3.45 12.96 4.71 1.39 1.35 4.41 13.95 4.76 6.06 2.82 7.32 5.00 0.00 7.89 3.28 2.35 3.49 8.16 2.78 0.00 2.94 7.55 3.57 3.23 K intron_retention hipk,RI_chr3L_548068_552227 chr3L + chr3L_574369_574465 chr3L_574368_574369;chr3L_574465_574466 chr3L_574058_574368;chr3L_574466_576065 0.55 0.26 0.66 0.80 0.00 0.43 0.60 0.41 0.71 0.00 0.00 0.61 0.67 0.43 1.07 0.90 0.52 0.58 0.59 0.56 0.47 0.42 0.76 0.41 0.00 0.41 1.08 5.77 0.64 0.27 0.70 0.00 0.40 0.73 0.18 0.00 0.79 0.87 0.66 0.50 0.00 0.41 0.77 0.67 0.27 0.56 0.26 0.55 0.68 0.00 0.51 0.30 0.56 0.98 0.65 0.64 0.43 0.14 K jcn_only_AA p47,Aldh-III,I_chr2R_3356541_3356614,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3352775_3352835 chr2R_3352792_3352835 chr2R_3352836_3353180;chr2R_3352504_3352774 0.00 0.00 0.00 0.59 0.00 0.45 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.41 0.45 0.00 0.00 0.00 0.00 0.26 0.00 0.46 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.18 0.26 0.26 0.57 0.00 0.00 0.40 0.00 0.50 0.00 0.24 0.00 0.00 K jcn_only_AD CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1666219_1670203;chr2R_1666219_1669803;chr2R_1666219_1670325;chr2R_1666219_1670281 chr2R_1666219_1670219 chr2R_1666119_1666218;chr2R_1670326_1670328 16.13 27.27 24.32 7.50 15.00 12.00 17.78 12.73 21.82 16.00 10.00 31.25 15.79 24.24 19.35 11.94 15.79 12.00 9.09 15.28 23.81 NA 15.38 13.04 NA 14.29 11.11 NA 22.58 17.39 36.17 12.90 17.24 21.21 21.74 40.00 19.05 NA NA 9.26 36.36 10.53 16.13 10.87 28.57 24.07 NA 25.68 16.05 0.00 0.00 18.18 19.05 NA 21.05 NA 9.52 18.18 K jcn_only_AD CG17233,RI_chr3L_20232898_20232962 chr3L - chr3L_20231011_20232962 chr3L_20231011_20231837 chr3L_20229534_20231010;chr3L_20232963_20233016 84.78 77.50 83.78 86.27 84.62 86.84 80.49 64.86 80.00 64.71 84.62 79.25 62.50 80.00 95.45 86.67 NA 93.10 86.36 82.19 NA 78.65 86.76 78.21 84.44 88.46 76.92 60.71 56.00 81.67 86.36 90.32 88.64 81.94 85.42 92.31 87.95 90.48 87.01 79.52 78.57 90.77 90.91 91.43 89.47 83.64 86.49 84.78 86.44 88.24 84.31 83.78 91.23 86.27 81.08 92.50 90.91 79.45 K jcn_only_AD CG31038,I_chr3R_25702915_25703648,I_chr3R_25705533_25722419,I_chr3R_25727788_25727905 chr3R + chr3R_25702915_25703648;chr3R_25702989_25703648;chr3R_25702895_25703648;chr3R_25702901_25703648;chr3R_25702838_25703648;chr3R_25702970_25703648 chr3R_25702897_25703648 chr3R_25703649_25703748;chr3R_25702831_25702837 4.55 NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.55 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention su(r),I_chrX_9094230_9095181 chrX - chrX_9094230_9095652 chrX_9094229_9094230;chrX_9095652_9095653 chrX_9094166_9094229;chrX_9095653_9095863 3.08 0.00 3.41 3.69 1.89 3.08 4.00 2.49 1.55 6.45 5.63 2.86 2.88 1.89 1.64 3.57 1.94 1.98 0.81 4.37 2.11 7.00 4.21 1.27 7.27 2.25 2.60 5.00 13.89 3.17 0.88 5.71 8.51 2.04 0.00 4.88 2.74 4.65 5.56 3.06 11.11 2.29 2.00 3.64 4.76 5.80 4.88 5.88 3.61 1.85 2.56 0.00 4.65 1.92 2.06 0.00 5.33 10.45 K intron_retention Nc73EF,I_chr3L_16952985_16955434,I_chr3L_16953768_16954599 chr3L + chr3L_16958079_16960481 chr3L_16958078_16958079;chr3L_16960481_16960482 chr3L_16957924_16958078;chr3L_16960482_16961180 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.76 0.80 0.58 0.00 0.41 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.60 0.00 1.65 0.00 0.57 0.40 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.44 0.64 0.00 0.50 0.00 0.00 0.22 0.00 0.00 1.19 0.00 1.03 0.00 0.00 0.63 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG34413,I_chr2R_20771136_20772048,I_chr2R_20772104_20773774,RI_chr2R_20772104_20774745,I_chr2R_20773500_20774745 chr2R + chr2R_20771136_20771196 chr2R_20771135_20771136;chr2R_20771196_20771197 chr2R_20771036_20771135;chr2R_20771197_20771257 0.00 0.00 0.00 3.50 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.53 0.00 0.00 0.79 0.00 0.00 0.00 0.61 0.64 0.00 0.00 1.52 1.90 4.55 8.44 0.98 0.00 0.00 1.04 0.00 0.00 2.76 0.00 0.00 0.33 0.00 1.60 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Fmr1,I_chr3R_5930712_5930781,I_chr3R_5934794_5935245,I_chr3R_5934801_5935537 chr3R - chr3R_5930712_5930781 chr3R_5930733_5930781 chr3R_5930782_5930881;chr3R_5930612_5930711 100.00 100.00 100.00 96.36 100.00 94.12 98.11 100.00 98.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 98.59 100.00 100.00 100.00 100.00 NA 100.00 100.00 96.43 94.92 100.00 100.00 100.00 96.20 100.00 96.55 NA 97.30 91.67 97.83 98.65 NA 100.00 NA 94.29 96.67 100.00 97.22 100.00 100.00 95.45 95.92 95.00 NA NA 100.00 NA 96.30 100.00 K alternative_acceptor CG3714,I_chr2L_4190825_4191774,I_chr2L_4192969_4193324,I_chr2L_4195905_4196470,I_chr2L_4196780_4197306,RI_chr2L_4196780_4197951,I_chr2L_4196815_4197306,I_chr2L_4196815_4197951 chr2L - chr2L_4196780_4197146 chr2L_4196815_4197146 chr2L_4197147_4197191;chr2L_4196715_4196779 7.14 3.70 9.09 8.11 14.29 5.88 13.60 8.70 3.28 7.69 3.85 5.45 13.64 13.64 0.00 10.91 6.90 0.00 8.33 7.14 0.00 5.26 8.51 2.94 5.41 19.23 9.52 4.35 10.34 12.00 3.39 NA 8.00 6.56 7.14 35.71 6.67 13.04 10.53 6.98 10.71 10.61 9.68 7.04 NA 6.25 NA 5.56 11.76 8.51 2.44 2.70 NA NA 7.41 4.55 5.26 NA K intron_retention FK506-bp2 chr2R + chr2R_15177731_15177890 chr2R_15177730_15177731;chr2R_15177890_15177891 chr2R_15177547_15177730;chr2R_15177891_15177961 0.45 0.36 0.35 0.17 0.37 0.52 1.51 0.39 0.78 0.00 0.42 0.43 0.50 0.50 0.45 0.76 0.67 0.35 0.97 0.27 0.17 0.48 0.44 0.42 1.41 0.76 1.04 0.62 1.01 0.28 0.86 0.34 0.17 0.46 0.49 1.14 0.80 0.23 0.39 0.28 1.70 0.53 0.19 0.47 0.81 0.46 0.35 0.26 0.39 0.38 0.82 0.53 0.40 0.19 0.33 0.56 0.42 0.48 K jcn_only_AA aPKC,I_chr2R_10833552_10833654,RI_chr2R_10849347_10850391 chr2R - chr2R_10834325_10835146 chr2R_10834806_10835146 chr2R_10835147_10835341 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 K intron_retention l(1)G0156 chrX - chrX_19413659_19413728 chrX_19413658_19413659;chrX_19413728_19413729 chrX_19412419_19413658;chrX_19413729_19413864 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.58 0.64 2.82 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.56 0.00 0.00 2.35 0.53 0.68 0.88 1.73 0.00 0.29 0.00 0.00 0.00 0.00 0.81 0.00 0.34 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 K alternative_acceptor drk,RI_chr2R_9389255_9389317,I_chr2R_9389597_9389751,I_chr2R_9389597_9389907,I_chr2R_9389597_9389940,I_chr2R_9389597_9390151,I_chr2R_9389597_9390271,I_chr2R_9389714_9390195 chr2R - chr2R_9389714_9390195;chr2R_9389597_9390195;chr2R_9389430_9390195 chr2R_9389400_9390195 chr2R_9390196_9390251;chr2R_9389318_9389399 0.00 1.41 0.00 0.59 0.00 0.00 0.61 0.49 0.00 0.00 1.45 0.00 0.00 0.99 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.82 1.67 0.78 0.54 0.00 1.28 1.69 0.00 0.00 0.73 0.00 0.00 1.15 0.00 0.00 0.00 1.47 0.00 0.00 0.00 1.19 0.00 0.00 2.27 0.00 0.00 1.18 0.00 K cassette sdt,C_chrX_8118081_8119117,I_chrX_8131684_8131842 chrX + chrX_8087540_8104435 chrX_8087540_8098205;chrX_8098337_8104435 chrX_8098206_8098336 chrX_8087501_8087539;chrX_8104436_8104713 94.74 92.86 95.00 81.82 88.89 83.33 85.71 95.24 97.67 81.82 100.00 94.29 92.31 100.00 94.12 93.33 88.89 90.91 93.75 96.88 88.89 93.55 97.30 96.55 95.45 92.86 94.74 77.78 95.45 96.00 100.00 87.50 97.14 95.65 100.00 95.24 89.80 96.55 93.48 97.44 92.86 97.50 92.31 100.00 100.00 94.12 88.24 97.37 89.29 100.00 96.77 94.74 100.00 92.86 95.24 95.65 100.00 93.33 K jcn_only_AA RpL15 chr3LHet + chr3LHet_2397820_2398049;chr3LHet_2397820_2398143 chr3LHet_2397820_2398127 chr3LHet_2397802_2397819;chr3LHet_2398144_2398454 94.68 NA 100.00 93.09 NA 90.32 NA 96.45 96.30 80.00 95.83 87.50 NA NA 99.37 73.91 98.00 93.94 94.78 94.00 NA 90.06 NA NA NA 94.94 NA 87.01 91.03 98.00 82.68 92.00 95.64 95.95 95.74 95.83 NA NA NA 96.49 88.30 92.59 94.52 97.10 95.70 91.83 NA 92.31 94.58 NA NA NA 97.74 NA 94.17 NA 95.24 95.17 K intron_retention Muc14A chrX + chrX_15951662_15951806 chrX_15951661_15951662;chrX_15951806_15951807 chrX_15951470_15951661;chrX_15951807_15952055 11.20 NA NA NA NA NA NA 17.65 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD SP2637,Gint3 chr2R - chr2R_14530268_14545584 chr2R_14530268_14545580 chr2R_14529910_14530267;chr2R_14545585_14545707 33.33 40.00 NA 38.46 NA NA 25.64 34.62 24.00 36.36 37.50 31.43 NA 28.57 36.36 47.62 NA 42.31 28.57 27.42 33.33 35.85 33.33 53.57 NA 25.00 18.52 34.38 21.74 28.57 35.48 15.00 31.03 36.67 47.62 43.48 41.03 33.33 30.77 35.71 45.00 41.94 NA 22.22 NA 46.15 20.00 25.00 24.14 30.56 40.00 18.52 NA 45.83 31.25 25.00 17.86 25.93 K intron_retention CG12393,CG9135 chr2L + chr2L_6048126_6048226 chr2L_6048125_6048126;chr2L_6048226_6048227 chr2L_6048106_6048125;chr2L_6048227_6048418 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 NA 100.00 100.00 92.86 100.00 93.33 92.86 100.00 100.00 94.74 100.00 100.00 93.75 100.00 100.00 100.00 96.30 95.00 94.74 100.00 100.00 100.00 94.44 100.00 96.77 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 95.00 95.83 92.86 96.15 100.00 94.74 96.43 96.77 100.00 K intron_retention dlg1,I_chrX_11298230_11299306 chrX + chrX_11284574_11289272 chrX_11284573_11284574;chrX_11289272_11289273 chrX_11284551_11284573;chrX_11289273_11289824 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 2.45 0.00 0.00 1.79 0.00 1.98 1.43 0.62 0.00 1.47 0.00 0.47 0.00 0.00 0.00 0.00 0.00 2.17 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention bs,tRNA:N5:60C chr2R + chr2R_20235984_20262937 chr2R_20235983_20235984;chr2R_20262937_20262938 chr2R_20235735_20235983;chr2R_20262938_20263289 0.00 6.25 11.76 0.00 0.00 NA NA 0.00 9.38 NA 23.08 11.36 NA NA 18.75 0.00 0.00 NA NA 4.65 NA 0.00 4.44 5.71 0.00 0.00 10.53 18.75 0.00 5.26 NA 0.00 6.25 0.00 NA 0.00 3.64 0.00 1.79 10.53 3.85 6.67 0.00 0.00 8.11 0.00 0.00 NA 4.35 0.00 6.67 NA 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor I_chr3L_1494947_1496080,pUf68,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1500389_1501350 chr3L_1500389_1501345 chr3L_1500289_1500388;chr3L_1501351_1501397 91.67 NA NA NA NA NA NA 80.00 90.91 NA 91.67 100.00 63.64 NA NA NA NA NA NA 93.33 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2392054 chrX_2387249_2389073;chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054 chrX_2389074_2389271;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2392055_2392148 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor Trf4-1,I_chrX_8459198_8459266 chrX + chrX_8459198_8459409 chrX_8459198_8459266 chrX_8459098_8459197;chrX_8459410_8460089 0.00 0.00 0.00 1.59 0.00 1.54 4.44 0.00 1.72 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 1.11 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 2.44 0.00 0.00 1.12 0.00 0.00 1.87 0.00 2.17 0.00 2.22 0.00 0.00 1.30 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 K intron_retention CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4989411_4990307 chr2L_4989410_4989411;chr2L_4990307_4990308 chr2L_4989390_4989410;chr2L_4990308_4990450 5.88 8.82 6.82 3.08 11.11 6.25 6.90 2.70 6.38 0.00 7.69 4.94 13.64 8.33 0.00 7.27 2.50 5.41 9.09 3.66 4.44 2.74 8.00 12.50 9.09 4.17 9.30 7.69 3.77 5.41 2.99 0.00 4.44 6.02 7.41 3.77 8.51 5.71 6.12 6.02 0.00 5.88 5.88 10.00 0.00 0.00 0.00 3.03 7.89 11.54 7.14 9.09 0.00 2.94 11.63 0.00 0.00 0.00 K intron_retention Hsc70Cb chr3L + chr3L_14030851_14032147 chr3L_14030850_14030851;chr3L_14032147_14032148 chr3L_14030581_14030850;chr3L_14032148_14033099 0.72 0.78 0.99 0.82 0.00 1.03 0.91 1.27 0.43 0.65 0.58 0.00 0.00 1.06 0.44 1.50 0.00 1.25 0.56 0.51 0.00 1.52 0.52 0.84 0.90 0.00 0.72 1.92 0.97 0.00 1.01 0.00 0.00 1.04 0.00 0.00 0.52 0.70 0.61 1.23 0.00 0.81 1.09 0.00 2.00 1.49 1.45 0.00 0.67 0.87 0.99 0.00 1.52 1.52 0.00 0.89 1.48 0.00 N intron_retention unc-5,E_chr2R_11238100_11240757,I_chr2R_11252444_11252570 chr2R + chr2R_11243996_11244325 chr2R_11243995_11243996;chr2R_11244325_11244326 chr2R_11244326_11244514 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG10737 chr2R + chr2R_15062592_15063752 chr2R_15062592_15063692 chr2R_15062387_15062591;chr2R_15063753_15063852 100.00 100.00 100.00 98.91 98.39 100.00 100.00 100.00 99.32 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 99.26 100.00 98.15 98.55 100.00 100.00 100.00 100.00 97.30 100.00 100.00 98.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.70 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_donor Dbp80,E_chr3LHet_2513829_2513928 chr3LHet + chr3LHet_2409947_2410016 chr3LHet_2409959_2410016 chr3LHet_2410017_2410075;chr3LHet_2409938_2409946 100.00 100.00 100.00 73.33 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA NA NA NA NA 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA 100.00 K intron_retention Shawn_Tyler,CG14213 chrX + chrX_19533427_19533478 chrX_19533426_19533427;chrX_19533478_19533479 chrX_19533178_19533426;chrX_19533479_19533853 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Pak,RI_chr3R_2181143_2181934 chr3R + chr3R_2183063_2184004 chr3R_2183063_2183596 chr3R_2182472_2183062;chr3R_2184005_2184744 0.96 1.68 0.00 2.14 0.00 0.00 4.35 0.68 0.00 2.25 0.00 0.67 0.00 1.14 0.00 0.81 0.00 0.00 1.08 1.30 0.00 6.22 0.53 1.91 3.85 21.28 7.19 2.05 3.33 2.40 0.00 2.60 2.35 0.61 0.00 3.51 0.48 1.50 1.20 1.38 4.30 0.51 0.00 2.35 0.62 0.79 0.93 3.33 0.00 4.76 1.66 0.96 0.00 0.00 1.46 0.90 1.79 0.00 K intron_retention CG33181,I_chrX_8386064_8406385 chrX + chrX_8404738_8406385 chrX_8404737_8404738;chrX_8406385_8406386 chrX_8404603_8404737;chrX_8406386_8406460 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Sox14 chr2R + chr2R_19871534_19871641 chr2R_19871533_19871534;chr2R_19871641_19871642 chr2R_19871067_19871533;chr2R_19871642_19872700 100.00 100.00 100.00 100.00 100.00 100.00 96.88 96.97 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 97.44 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 96.43 100.00 96.30 100.00 92.86 97.62 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 K intron_retention Aats-ala-m chr3L + chr3L_5141557_5141614 chr3L_5141556_5141557;chr3L_5141614_5141615 chr3L_5140562_5141556;chr3L_5141615_5141771 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 2.78 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 0.00 0.00 0.00 1.72 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.03 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 K alternative_donor CG9003,I_chr2R_7531685_7531831,RI_chr2R_7538713_7538828 chr2R - chr2R_7531685_7531831 chr2R_7531685_7531743 chr2R_7531585_7531684;chr2R_7531832_7531921 100.00 94.12 100.00 100.00 92.86 100.00 100.00 97.06 98.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 95.24 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 95.83 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 90.91 K intron_retention slmb,I_chr3R_16951107_16953048 chr3R - chr3R_16947730_16947793 chr3R_16947729_16947730;chr3R_16947793_16947794 chr3R_16947275_16947729;chr3R_16947794_16947973 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Tm1,I_chr3R_11120969_11125831,I_chr3R_11121267_11122312,I_chr3R_11121267_11124998,RI_chr3R_11125070_11125831,I_chr3R_11125070_11126469 chr3R + chr3R_11120969_11122312 chr3R_11120968_11120969;chr3R_11122312_11122313 chr3R_11120869_11120968;chr3R_11122313_11122327 10.71 12.50 17.50 34.55 26.09 9.52 22.50 28.07 18.06 0.00 19.35 16.36 10.53 10.00 10.81 11.11 14.81 13.33 16.67 14.71 16.67 16.22 6.10 3.33 12.20 10.71 22.95 21.88 11.76 8.89 18.75 4.35 4.00 23.26 8.70 6.12 5.36 6.12 10.53 7.46 4.26 14.29 12.00 9.62 9.09 11.67 4.35 9.38 12.50 3.77 6.85 0.00 4.84 4.44 16.67 8.33 3.00 7.41 K alternative_acceptor l(1)G0136 chrX + chrX_15629208_15629279 chrX_15629208_15629276 chrX_15629132_15629207;chrX_15629280_15629354 6.06 5.19 6.06 6.58 6.67 5.26 7.79 4.35 6.31 6.60 7.32 6.52 8.33 6.82 5.66 3.28 4.00 7.32 7.14 6.02 4.17 2.63 7.69 9.90 6.25 2.08 4.95 4.39 7.59 4.76 6.90 6.06 5.59 5.71 4.84 7.27 8.06 2.22 5.51 4.26 5.68 4.96 2.94 8.57 5.26 7.20 6.56 6.38 7.29 4.65 7.79 6.90 8.47 5.48 4.62 3.60 7.14 5.69 K intron_retention lig,I_chr2R_3960977_3961116,I_chr2R_3960977_3961119,CI_chr2R_3962006_3962916,RI_chr2R_3962875_3962977 chr2R + chr2R_3960977_3961104 chr2R_3960976_3960977;chr2R_3961104_3961105 chr2R_3960877_3960976;chr2R_3961105_3961205 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 1.06 0.00 1.28 0.33 0.00 0.49 0.65 0.00 1.00 0.00 1.30 0.00 1.47 0.00 0.50 0.00 0.30 0.59 0.39 1.12 0.27 0.46 0.00 0.35 0.00 0.49 0.00 1.09 0.00 0.65 0.00 0.30 0.22 0.44 0.50 0.00 0.00 0.00 0.00 0.28 0.00 0.00 K intron_retention CG31460,I_chr3R_4388607_4388664 chr3R + chr3R_4388609_4388664 chr3R_4388608_4388609;chr3R_4388664_4388665 chr3R_4388554_4388608;chr3R_4388665_4388756 0.00 0.00 0.00 0.00 5.26 0.00 0.00 1.54 2.63 NA 0.00 0.00 0.00 0.00 0.00 5.26 0.00 3.85 0.00 3.92 0.00 NA NA NA NA 2.04 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA NA NA 0.00 2.56 3.17 0.00 0.00 3.03 0.00 NA 3.51 1.52 NA NA NA 0.00 NA 0.00 NA NA 0.00 N jcn_only_AD CG2003 chr3R + chr3R_27815249_27815312;chr3R_27815189_27815312 chr3R_27815253_27815312 chr3R_27815313_27816636;chr3R_27815109_27815188 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.81 0.00 0.00 11.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35.71 14.08 10.92 0.00 0.00 0.00 15.15 15.71 0.00 10.38 0.00 0.00 0.00 0.00 0.00 14.14 0.00 8.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.62 0.00 8.76 K jcn_only_AA CG12024,REI_chr3L_1857404_1857509 chr3L + chr3L_1857404_1857512;chr3L_1857404_1857509 chr3L_1857404_1857464 chr3L_1857304_1857403;chr3L_1857513_1857609 22.47 14.63 13.64 12.24 25.53 22.22 28.21 19.15 22.68 25.68 21.95 18.09 28.57 21.43 16.67 38.10 36.36 16.67 8.33 23.76 26.32 40.74 16.49 22.47 29.27 16.67 20.73 24.42 33.73 23.16 14.29 42.11 24.62 16.92 25.86 42.86 22.22 21.69 22.47 30.77 21.15 24.10 16.67 28.24 26.74 21.54 16.09 35.00 16.67 20.69 21.59 30.36 19.48 27.69 22.22 27.59 17.02 29.73 K intron_retention CG9705,I_chr3L_16774043_16774562 chr3L + chr3L_16773891_16774562 chr3L_16773890_16773891;chr3L_16774562_16774563 chr3L_16773605_16773890;chr3L_16774563_16774662 6.55 4.40 5.00 9.02 6.74 6.25 14.16 9.65 6.37 4.95 7.25 41.84 16.28 5.95 7.34 9.00 5.75 7.53 10.34 7.98 7.46 6.55 3.67 3.32 6.52 6.52 7.98 11.02 15.15 10.06 13.33 8.15 8.33 7.98 4.57 4.62 3.91 3.51 5.08 4.90 6.47 8.00 5.62 6.54 6.91 2.64 2.44 10.65 6.64 4.15 3.46 2.73 7.65 2.26 10.92 3.70 4.93 6.90 K intron_retention CG31367,I_chr3R_2191538_2191675,I_chr3R_2199103_2199426 chr3R - chr3R_2187634_2187726 chr3R_2187633_2187634;chr3R_2187726_2187727 chr3R_2187394_2187633;chr3R_2187727_2188056 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.03 0.00 NA 0.00 0.00 8.33 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 NA 0.00 3.23 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 3.70 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon dorsal,RI_chr2L_17438018_17439189,FI_chr2L_17449369_17450215,noncoding_3500,RI_chr2L_17450002_17450219 chr2L - chr2L_17449369_17449875 chr2L_17449504_17449875 chr2L_17449296_17449368 chr2L_17449387_17449503 chr2L_17449876_17449887 5.00 NA NA NA NA NA 18.18 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 10.00 NA NA NA NA NA NA NA NA 0.00 N alternative_acceptor CHES-1-like,I_chrX_7584030_7588818 chrX - chrX_7584030_7590509 chrX_7588919_7590509 chrX_7590510_7590564;chrX_7583930_7584029 52.63 42.11 65.00 50.00 35.71 57.14 54.05 51.28 65.31 42.86 30.77 56.25 53.33 66.67 43.75 66.67 52.94 46.15 53.85 64.00 50.00 25.00 52.63 50.00 50.00 54.55 29.41 33.33 50.00 57.14 58.82 66.67 50.00 66.67 77.78 36.36 15.79 44.44 25.00 45.00 80.00 55.88 63.16 30.00 50.00 50.00 57.14 72.73 76.92 80.00 60.00 43.75 50.00 100.00 50.00 36.36 75.00 62.50 K intron_retention eIF-4E,RI_chr3L_9394054_9394756,I_chr3L_9394308_9394756,RI_chr3L_9394468_9394631,I_chr3L_9394468_9394659,I_chr3L_9394468_9395155,I_chr3L_9394468_9395240,I_chr3L_9394468_9395446,I_chr3L_9394685_9394756,RI_chr3L_9394707_9395016,RI_chr3L_9394707_9395198,I_chr3L_9394707_9395309,I_chr3L_9394819_9394884,I_chr3L_9394819_9395016,I_chr3L_9394819_9395198,I_chr3L_9394819_9395379 chr3L - chr3L_9394468_9394756 chr3L_9394467_9394468;chr3L_9394756_9394757 chr3L_9394368_9394467;chr3L_9394757_9394759 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG10188 chr2L - chr2L_19508266_19508325 chr2L_19508265_19508266;chr2L_19508325_19508326 chr2L_19507490_19508265;chr2L_19508326_19508760 6.97 NA NA NA NA NA NA 0.00 5.00 NA NA 12.50 NA NA NA 22.22 NA NA NA 0.00 NA 4.76 7.69 NA NA NA NA NA 0.00 NA NA NA NA 6.25 NA 18.75 7.69 NA 14.29 12.50 NA 0.00 NA NA NA NA NA 0.00 0.00 NA 10.00 NA NA NA 7.69 NA NA NA K alternative_acceptor CG3309 chrX - chrX_5222140_5222201 chrX_5222143_5222201 chrX_5222202_5223396;chrX_5220670_5222139 84.52 NA NA NA NA NA 55.56 NA 90.00 NA NA 77.78 NA NA NA NA NA NA NA 83.33 NA 66.67 NA NA NA NA 88.89 85.71 NA NA NA NA NA 87.50 NA NA 88.89 NA 76.92 NA NA NA NA NA NA 100.00 NA NA 71.43 NA NA NA NA NA NA NA NA NA K intron_retention CG6860,F_chr2L_17368389_17370842,RFI_chr2L_17371821_17372564 chr2L - chr2L_17368389_17372564 chr2L_17368388_17368389;chr2L_17372564_17372565 chr2L_17368289_17368388;chr2L_17372565_17372642 0.00 0.94 0.00 1.96 0.00 0.00 2.90 0.95 1.08 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 2.02 1.49 2.78 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 1.20 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 1.67 0.00 0.00 0.00 0.93 0.00 0.00 K alternative_donor eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341925_20342041;chr3L_20341636_20342041;chr3L_20341865_20342041;chr3L_20341486_20342041;chr3L_20341522_20342041;chr3L_20341751_20342041;chr3L_20341530_20342041;chr3L_20341629_20342041;chr3L_20341598_20342041;chr3L_20341759_20342041 chr3L_20341509_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 2.38 0.00 3.70 3.64 4.00 5.00 0.00 2.82 7.58 0.00 5.00 0.00 5.26 5.56 0.00 8.33 3.45 4.17 2.70 5.17 0.00 8.33 0.00 4.55 0.00 3.03 7.69 10.00 0.00 8.33 0.00 0.00 0.00 6.45 0.00 0.00 4.76 8.33 0.00 2.22 0.00 3.70 4.17 0.00 5.26 0.00 0.00 5.26 5.33 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 2.38 K alternative_acceptor Nedd4,I_chr3L_17532828_17532882,I_chr3L_17532828_17533787,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17532828_17532882;chr3L_17532828_17533787 chr3L_17532828_17533790 chr3L_17532728_17532827;chr3L_17533791_17533887 77.27 75.00 75.00 21.21 85.71 87.50 64.06 76.19 82.50 80.00 28.57 77.27 75.00 75.00 86.21 76.47 80.00 73.33 82.35 75.68 50.00 33.33 82.14 77.78 75.00 84.62 86.96 69.23 78.57 66.67 78.95 84.62 77.27 75.00 80.95 86.36 83.33 88.00 80.00 77.78 70.00 70.97 77.78 75.00 70.00 64.29 83.33 70.00 79.41 75.00 82.61 88.00 85.71 70.00 83.33 81.82 71.43 45.45 K cassette Galpha49B,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500357_8503411;chr2R_8500390_8503411 chr2R_8500357_8501759,chr2R_8500390_8501759;chr2R_8501851_8503411 chr2R_8501760_8501850 chr2R_8500333_8500356;chr2R_8503412_8503586 40.91 37.14 42.42 30.59 25.71 33.33 38.98 42.50 34.82 45.83 32.43 73.08 44.19 31.82 35.71 45.71 65.52 40.91 46.00 32.50 41.94 50.00 31.67 38.46 33.33 45.71 40.00 25.00 45.71 28.85 37.50 60.00 43.48 44.00 51.85 61.29 32.14 37.14 40.00 52.38 65.00 51.43 47.06 22.97 47.06 45.95 40.91 51.06 42.86 32.00 33.33 43.33 38.46 35.71 29.31 38.46 36.36 69.57 K jcn_only_AD Magi,I_chr2R_17020420_17029043,I_chr2R_17026738_17027105,I_chr2R_17026738_17029359 chr2R - chr2R_17026738_17029043 chr2R_17026738_17027105 chr2R_17026638_17026737;chr2R_17029044_17029143 0.00 NA 4.55 0.00 NA NA 3.45 0.00 0.00 NA NA 0.00 0.00 9.38 0.00 2.63 0.00 NA 3.12 0.00 NA NA 4.17 NA NA 0.00 9.52 NA NA NA 0.00 NA NA 0.00 NA 4.55 NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA 2.63 NA 0.00 NA NA NA 4.00 NA NA NA N jcn_only_AA nimB1 chr2L + chr2L_13964457_13964534 chr2L_13964457_13964513 chr2L_13964370_13964456;chr2L_13964535_13964602 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Dek chr2R + chr2R_12746755_12746820 chr2R_12746755_12746817 chr2R_12746566_12746754;chr2R_12746821_12746854 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.39 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.68 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.15 100.00 100.00 100.00 100.00 100.00 99.32 100.00 100.00 100.00 98.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.77 100.00 100.00 100.00 K jcn_only_AD drd chrX + chrX_15029850_15029991 chrX_15029921_15029991 chrX_15029992_15030308;chrX_15029558_15029849 100.00 NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA 96.15 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 NA NA NA NA NA 100.00 NA K alternative_donor CkIIbeta,I_chrX_11686847_11687475,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11687025_11687475;chrX_11686979_11687475;chrX_11686948_11687475 chrX_11687313_11687475 chrX_11687476_11687551;chrX_11686929_11686947 86.36 73.91 83.33 76.74 83.33 81.82 83.33 82.61 79.37 100.00 94.44 84.44 79.17 80.77 80.77 93.88 75.00 86.36 77.78 76.60 80.95 93.75 86.96 86.67 88.89 87.50 92.86 100.00 100.00 95.24 87.10 92.31 96.55 82.22 94.12 100.00 87.50 90.00 100.00 92.11 100.00 77.55 75.00 77.27 94.44 92.31 80.95 96.30 78.18 84.62 83.33 93.75 81.25 100.00 74.36 81.25 90.00 85.71 K alternative_donor RpL27,I_chr3R_21510239_21510298,RI_chr3R_21510239_21510441,I_chr3R_21510239_21510464,I_chr3R_21510239_21510656,I_chr3R_21510239_21510726 chr3R - chr3R_21510239_21510464;chr3R_21510239_21510656;chr3R_21510239_21510680;chr3R_21510239_21510298;chr3R_21510239_21510746 chr3R_21510239_21510739 chr3R_21510139_21510238;chr3R_21510747_21510756 10.29 7.14 9.68 7.84 3.23 14.81 7.41 6.58 8.51 15.38 3.70 14.63 15.38 14.29 4.76 9.09 6.90 3.85 6.45 17.02 10.81 18.18 12.50 8.33 10.00 4.00 9.09 12.50 18.37 33.33 2.99 21.21 24.00 7.69 14.29 18.75 14.29 6.25 14.81 17.19 27.27 6.62 6.25 18.75 14.77 19.44 11.11 19.61 10.29 10.71 11.11 10.00 4.35 0.00 4.40 7.69 5.45 19.39 K intron_retention MED6,CG9471,CG12946,I_chr3R_5599701_5600032,I_chr3R_5609682_5609889 chr3R - chr3R_5592845_5592898 chr3R_5592844_5592845;chr3R_5592898_5592899 chr3R_5592670_5592844;chr3R_5592899_5593366 2.50 0.00 4.35 6.94 0.00 0.00 3.28 0.00 3.03 4.00 0.00 0.00 2.38 0.00 4.55 5.26 0.00 2.38 2.50 2.88 0.00 0.00 0.00 3.57 6.90 11.11 7.89 21.05 0.00 6.25 3.03 18.18 5.13 0.00 0.00 8.57 2.74 0.00 1.69 3.92 0.00 2.56 0.00 0.00 12.77 4.44 1.72 16.67 1.19 0.00 5.26 3.57 0.00 0.00 4.17 9.80 1.49 0.00 K alternative_donor I_chrX_15223901_15223968,HDAC6,I_chrX_15232958_15233665 chrX + chrX_15232738_15233659;chrX_15232699_15233659 chrX_15232958_15233659 chrX_15233660_15234340;chrX_15232108_15232698 61.11 81.82 72.73 36.36 69.23 72.73 66.67 40.00 60.00 40.00 80.00 76.19 40.00 58.33 57.14 85.71 55.56 53.33 83.33 80.00 85.71 51.72 63.64 72.22 66.67 50.00 61.11 50.00 68.75 55.56 92.86 76.92 53.85 57.14 69.23 50.00 53.85 61.11 57.58 53.12 61.90 68.00 60.00 60.00 73.08 56.67 63.16 76.19 60.87 44.12 63.16 80.00 59.09 56.00 58.82 81.25 63.64 61.11 K jcn_only_AA 14-3-3epsilon,I_chr3R_14068632_14073155,RI_chr3R_14074062_14074138,I_chr3R_14074016_14074138 chr3R + chr3R_14073874_14073936;chr3R_14073874_14073954;chr3R_14073874_14073939 chr3R_14073874_14073942 chr3R_14073693_14073873;chr3R_14073955_14074015 16.68 18.25 16.05 17.97 15.43 19.29 18.51 16.62 17.02 18.49 18.37 18.24 16.59 15.42 16.49 14.83 15.51 16.63 15.10 19.09 16.69 14.79 18.30 16.38 19.14 15.75 15.11 23.97 19.29 16.14 16.62 16.51 16.69 16.87 17.66 14.12 18.16 17.01 17.20 15.15 13.80 17.45 16.03 15.45 18.34 16.24 15.85 15.67 16.00 16.34 16.37 17.15 18.25 17.70 16.68 18.27 16.72 18.56 K cassette CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2439831_2443389 chr3L_2439831_2442435;chr3L_2442961_2443389 chr3L_2442436_2442960 chr3L_2439731_2439830;chr3L_2443390_2443838 99.20 100.00 98.04 98.98 96.00 93.18 100.00 96.15 99.27 98.88 97.67 100.00 97.30 97.67 100.00 100.00 97.73 97.87 100.00 99.20 92.86 98.20 99.50 99.21 100.00 98.04 100.00 99.63 97.74 99.30 100.00 98.46 99.49 98.75 100.00 100.00 99.57 98.17 99.41 100.00 100.00 98.35 97.22 99.28 96.51 98.85 100.00 99.29 98.97 100.00 98.36 98.36 97.75 100.00 96.36 98.46 100.00 100.00 K jcn_only_AD CG9795,I_chr3R_151216_151418 chr3R + chr3R_151184_151418;chr3R_151216_151418;chr3R_151180_151418 chr3R_151212_151418 chr3R_151419_151518;chr3R_151116_151179 93.94 NA 82.61 91.67 100.00 90.91 86.96 94.74 96.49 100.00 NA 100.00 NA NA NA 94.12 95.00 96.00 95.24 93.18 NA 95.24 95.35 93.75 NA NA 96.88 NA NA NA 92.59 95.00 NA 97.56 NA 100.00 81.48 91.30 86.67 88.46 NA 95.12 100.00 90.91 92.00 92.00 93.75 NA 94.29 85.71 87.50 100.00 NA NA 92.00 88.46 92.31 95.45 K alternative_acceptor CG11779,CG5835,I_chr3R_14982264_14982380,I_chr3R_14982295_14982380 chr3R - chr3R_14982264_14982380 chr3R_14982269_14982380 chr3R_14982381_14982480;chr3R_14982195_14982263 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 95.83 87.50 100.00 90.91 100.00 95.00 100.00 100.00 94.12 100.00 100.00 100.00 96.15 100.00 100.00 100.00 93.33 96.67 95.24 100.00 100.00 89.66 100.00 95.24 91.67 100.00 97.14 100.00 95.00 100.00 98.11 100.00 100.00 100.00 100.00 96.43 100.00 96.30 100.00 100.00 100.00 96.55 100.00 100.00 96.15 95.24 95.45 96.55 97.96 K alternative_donor Sod,RI_chr3L_11105949_11106366,I_chr3L_11105949_11106370 chr3L - chr3L_11105949_11106673 chr3L_11105949_11106631 chr3L_11105849_11105948;chr3L_11106674_11106838 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31342,I_chr3R_8813079_8814327,I_chr3R_8822346_8822403 chr3R + chr3R_8816000_8816062 chr3R_8815999_8816000;chr3R_8816062_8816063 chr3R_8815866_8815999;chr3R_8816063_8816221 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 1.13 0.00 0.00 1.02 0.00 0.00 0.60 0.48 1.32 0.00 0.00 1.17 0.69 0.45 0.57 1.32 0.75 0.63 1.69 4.44 0.00 0.00 1.30 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.78 0.00 0.00 0.00 0.00 0.00 1.45 2.34 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 K jcn_only_AA Eb1,RI_chr2R_2640290_2642206,I_chr2R_2640494_2642206,I_chr2R_2642491_2642549 chr2R + chr2R_2640290_2640353 chr2R_2640290_2640347 chr2R_2640190_2640289;chr2R_2640354_2640493 99.74 99.09 99.54 99.84 100.00 99.41 99.80 99.53 99.73 99.44 100.00 99.56 100.00 100.00 100.00 99.57 99.30 99.74 100.00 99.56 99.70 99.73 99.56 100.00 100.00 99.76 100.00 99.46 99.53 100.00 99.83 100.00 99.69 100.00 100.00 99.68 99.78 99.72 99.59 99.78 100.00 99.75 100.00 99.59 100.00 99.75 99.77 99.56 99.64 99.42 100.00 99.70 99.24 99.72 99.80 100.00 99.61 99.60 K alternative_acceptor cic chr3R + chr3R_16125516_16125689 chr3R_16125516_16125674 chr3R_16125423_16125515;chr3R_16125690_16125874 75.71 78.16 71.83 61.11 72.84 72.86 84.78 70.25 76.44 95.35 75.00 76.97 75.71 72.60 68.82 70.67 69.74 73.96 76.06 75.84 77.05 78.76 74.31 77.01 97.87 93.75 55.43 50.67 78.95 74.19 73.17 85.29 76.56 76.38 80.00 90.00 78.57 77.03 79.17 72.07 93.33 80.70 73.68 83.00 63.64 72.58 78.87 80.28 76.07 74.24 70.83 70.69 68.33 80.43 73.91 68.42 65.79 73.33 K jcn_only_AA AnnIX,I_chr3R_16895383_16895999 chr3R + chr3R_16894742_16896445 chr3R_16894742_16895999 chr3R_16894560_16894741;chr3R_16896446_16896495 22.34 17.60 19.15 2.81 11.34 13.61 7.57 13.83 17.17 23.94 13.90 32.33 13.58 12.89 14.50 19.73 9.91 9.49 12.29 14.29 13.87 60.68 25.29 22.34 20.56 8.96 18.10 24.22 39.16 26.57 17.40 28.87 42.29 12.10 23.67 60.36 26.47 29.45 25.08 32.61 25.45 14.68 15.64 29.61 22.83 30.61 31.12 23.33 17.66 27.13 22.36 28.20 36.99 23.49 14.09 22.31 23.06 32.64 K intron_retention CEI_chr3R_10927927_10937314,CG6934 chr3R - chr3R_10935837_10937314 chr3R_10935836_10935837;chr3R_10937314_10937315 chr3R_10935632_10935836;chr3R_10937315_10937414 94.12 NA 92.31 100.00 NA NA 100.00 93.75 100.00 NA NA 100.00 NA NA 100.00 100.00 NA 0.00 92.31 95.00 NA NA 93.33 90.00 NA NA 94.12 92.86 90.91 NA 90.00 NA NA 93.75 100.00 100.00 NA NA 80.00 94.12 100.00 94.12 NA 100.00 NA 87.50 NA 100.00 100.00 NA 90.91 NA NA 87.50 100.00 NA 90.00 100.00 K intron_retention CG17928 chr2L + chr2L_16791708_16791763 chr2L_16791707_16791708;chr2L_16791763_16791764 chr2L_16791375_16791707;chr2L_16791764_16791869 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 97.73 100.00 94.12 96.08 100.00 100.00 100.00 100.00 100.00 96.43 100.00 97.87 100.00 94.44 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 97.37 91.67 97.14 100.00 100.00 100.00 96.88 100.00 100.00 88.89 K multi_cassette unk,I_chr3R_18980963_18981530 chr3R - chr3R_18980690_18981530 chr3R_18980690_18980853;chr3R_18980963_18981161;chr3R_18981272_18981530 chr3R_18980854_18980962;chr3R_18981162_18981271 chr3R_18980567_18980689;chr3R_18981531_18981630 9.84 9.68 10.71 2.94 15.00 8.70 6.45 24.32 17.02 11.11 8.33 4.62 24.00 11.76 11.11 29.63 10.00 13.64 22.73 21.43 8.00 19.30 6.12 6.06 6.06 14.81 6.12 19.23 5.88 9.68 12.50 6.67 26.67 17.65 9.68 12.12 7.50 8.00 5.36 15.56 6.25 17.39 11.11 5.88 NA 5.88 6.45 28.57 11.11 14.29 3.64 4.35 5.00 4.35 18.18 14.29 7.69 7.69 K intron_retention CG4901,RI_chr2L_10212268_10212326,RI_chr2L_10212403_10212451 chr2L + chr2L_10212403_10212467 chr2L_10212402_10212403;chr2L_10212467_10212468 chr2L_10212327_10212402;chr2L_10212468_10212551 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 2.56 0.00 0.00 0.00 0.00 20.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.17 0.00 0.00 0.00 K intron_retention MB8.chr3R.pasa.66,Alh,REI_chr3R_2921238_2921297,RI_chr3R_2921566_2921658,I_chr3R_2927820_2933442,RI_chr3R_2946518_2946663 chr3R - chr3R_2922973_2924040 chr3R_2922972_2922973;chr3R_2924040_2924041 chr3R_2922906_2922972;chr3R_2924041_2924205 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 84.62 NA 100.00 NA NA NA NA NA 100.00 100.00 95.24 100.00 96.30 95.83 95.65 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 95.83 92.31 100.00 100.00 NA 100.00 NA 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 91.67 K jcn_only_AD RpL15 chr3LHet + chr3LHet_2398018_2398127;chr3LHet_2397859_2398127;chr3LHet_2397925_2398127;chr3LHet_2397992_2398127;chr3LHet_2398060_2398127;chr3LHet_2398002_2398127;chr3LHet_2397820_2398127;chr3LHet_2398053_2398127 chr3LHet_2397841_2398127 chr3LHet_2398128_2398454;chr3LHet_2397802_2397819 0.35 0.00 1.39 1.34 0.00 0.00 4.40 1.61 1.41 6.25 2.86 1.75 2.38 3.12 2.56 1.96 2.63 5.45 2.94 0.00 2.56 0.00 0.00 0.00 0.00 3.19 0.00 0.00 0.66 0.00 2.34 0.31 1.37 1.43 0.00 0.00 0.00 NA 4.35 0.00 1.10 0.37 0.00 0.33 1.39 0.47 0.00 0.00 0.41 0.00 0.00 0.00 0.12 0.00 1.71 0.00 0.00 0.12 K intron_retention Dredd,RI_chrX_529342_529426 chrX - chrX_528521_528578 chrX_528520_528521;chrX_528578_528579 chrX_528452_528520;chrX_528579_528652 50.00 NA 26.67 50.00 NA 30.77 36.36 50.00 58.82 36.36 NA 45.00 NA 46.15 41.67 75.00 NA 66.67 40.00 50.00 NA 29.41 70.00 NA NA NA NA NA 50.00 53.33 59.26 56.25 38.10 50.00 NA NA 46.15 NA NA 40.00 55.56 55.56 63.64 47.37 33.33 65.00 58.33 55.56 51.85 50.00 66.67 NA NA NA 50.00 69.23 69.23 53.12 K jcn_only_AD E_chr4_592469_594231,Ephrin,I_chr4_595055_597604,RI_chr4_596272_596341 chr4 + chr4_592737_594238;chr4_592646_594238;chr4_592490_594238;chr4_592469_594238;chr4_592410_594238;chr4_592798_594238 chr4_592593_594238 chr4_594239_594331;chr4_592404_592409 66.27 59.26 69.57 66.67 80.00 75.00 66.32 61.25 66.28 NA NA 63.29 54.76 76.32 64.71 73.26 75.00 NA 72.34 67.74 55.17 NA 81.48 NA 65.22 43.75 63.64 NA NA NA 64.52 NA NA 77.22 62.50 71.43 NA NA NA 66.67 NA 62.90 58.82 50.00 NA NA NA NA 66.27 NA 62.16 36.36 NA NA 78.79 NA NA NA K cassette CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21263124_21273323 chr2L_21263124_21263647;chr2L_21263787_21273323 chr2L_21263648_21263786 chr2L_21262988_21263123;chr2L_21273324_21273463 98.57 96.97 100.00 98.44 95.24 97.06 94.03 98.59 98.73 100.00 96.55 98.63 100.00 97.67 97.50 100.00 100.00 96.43 100.00 100.00 95.65 100.00 98.25 97.30 100.00 100.00 97.67 100.00 97.06 100.00 100.00 94.44 98.11 98.57 100.00 100.00 100.00 100.00 96.77 96.97 100.00 98.68 97.06 97.78 94.12 94.44 100.00 95.16 96.00 100.00 100.00 100.00 100.00 100.00 96.00 96.15 96.15 97.50 K intron_retention egr,I_chr2R_5970832_5970930,I_chr2R_5970999_5971058 chr2R + chr2R_5970832_5970926 chr2R_5970831_5970832;chr2R_5970926_5970927 chr2R_5970767_5970831;chr2R_5970927_5970998 33.91 24.51 41.10 43.06 34.25 32.93 44.83 37.86 38.67 20.59 25.71 37.19 39.13 37.88 41.30 31.58 34.85 39.68 30.88 37.69 44.93 22.94 31.25 27.70 38.98 43.55 20.14 45.24 33.33 25.00 37.31 33.33 45.45 38.30 37.66 26.67 18.94 15.91 31.45 26.76 38.00 37.01 33.87 17.39 35.35 31.75 35.35 37.93 33.91 22.07 21.85 23.19 27.59 31.00 41.25 21.11 27.83 36.89 K jcn_only_AA Vha16,I_chr2R_2519645_2520499,RI_chr2R_2519646_2519840,I_chr2R_2519646_2520292,I_chr2R_2519646_2520298,I_chr2R_2519775_2520499 chr2R - chr2R_2519646_2520499 chr2R_2519775_2520499 chr2R_2520500_2520599;chr2R_2519546_2519645 0.00 0.27 0.00 0.27 0.00 0.00 0.56 0.00 0.11 0.38 0.00 0.00 0.54 0.00 0.00 0.00 0.27 0.00 0.00 0.17 0.00 0.30 0.00 0.00 0.86 0.29 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.15 0.00 1.31 0.45 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Tango2,RI_chrX_13543535_13546911,I_chrX_13544101_13544542 chrX + chrX_13511970_13512134 chrX_13511969_13511970;chrX_13512134_13512135 chrX_13511850_13511969;chrX_13512135_13512269 33.33 NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA 38.46 NA 36.84 NA 11.11 NA NA NA NA 38.46 42.86 NA NA 27.27 NA NA NA 22.73 NA 14.29 66.67 30.00 33.33 NA NA 31.25 27.78 NA 40.00 30.77 NA NA NA NA NA NA 33.33 NA 42.86 K intron_retention CG30456 chr2R + chr2R_12991193_12993102 chr2R_12991192_12991193;chr2R_12993102_12993103 chr2R_12990017_12991192;chr2R_12993103_12993201 3.39 5.88 3.33 2.94 8.33 0.00 14.58 6.90 1.79 7.41 6.25 4.17 7.41 0.00 6.25 0.00 0.00 13.04 8.57 8.00 11.11 11.32 0.00 3.12 0.00 2.70 9.09 0.00 4.44 3.45 8.57 0.00 0.00 6.52 0.00 5.26 7.14 0.00 3.57 0.00 9.68 3.57 0.00 0.00 0.00 4.76 0.00 2.86 3.64 NA 6.12 0.00 NA 0.00 2.70 0.00 0.00 NA K alternative_donor Keap1 chr3R - chr3R_12902616_12905594;chr3R_12902616_12905148 chr3R_12902616_12905144 chr3R_12902299_12902615;chr3R_12905595_12905636 0.00 NA NA NA NA NA 12.50 0.00 4.76 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 33.33 NA NA NA 0.00 0.00 NA NA NA NA NA 7.69 NA 0.00 NA NA NA NA NA 0.00 7.69 NA NA NA NA NA NA NA NA 0.00 K intron_retention CG1265 chr3L + chr3L_4255731_4255799 chr3L_4255730_4255731;chr3L_4255799_4255800 chr3L_4255610_4255730;chr3L_4255800_4256055 2.00 1.41 2.27 3.77 2.27 7.32 3.77 4.21 3.45 0.00 0.00 0.00 3.45 0.00 0.00 4.84 1.75 3.92 0.00 2.27 0.00 0.00 2.78 2.02 2.13 2.00 3.33 16.67 3.85 2.38 0.00 4.76 0.00 7.14 0.00 0.00 1.82 4.76 4.29 1.16 0.00 1.96 0.00 0.00 0.00 4.12 2.22 0.00 3.75 1.41 1.09 2.38 0.00 0.00 2.00 5.06 1.69 0.00 K jcn_only_AA CG40191,I_chr2RHet_391475_391828,I_chr2RHet_392279_392824 chr2RHet + chr2RHet_391927_392824 chr2RHet_391927_391975 chr2RHet_391829_391926;chr2RHet_392825_392923 96.86 97.67 100.00 94.71 95.54 96.00 99.57 97.51 96.47 98.51 98.63 96.71 100.00 98.37 95.04 96.28 97.79 96.26 97.33 97.26 97.03 95.74 94.67 98.68 92.96 95.00 98.16 96.05 91.30 97.85 97.22 96.23 98.99 97.29 96.77 90.24 98.55 100.00 96.80 96.86 84.34 98.43 98.11 96.43 100.00 96.92 93.16 97.14 97.69 93.62 94.85 95.00 95.45 94.19 97.92 95.71 95.04 98.18 K intron_retention CG15347,I_chrX_8353497_8353552 chrX - chrX_8353203_8353256 chrX_8353202_8353203;chrX_8353256_8353257 chrX_8352508_8353202;chrX_8353257_8353370 0.45 0.39 0.74 0.87 0.00 0.00 0.97 0.32 0.56 0.51 0.74 0.54 0.00 0.00 1.15 0.32 0.00 0.00 0.00 0.55 0.00 1.00 0.67 0.55 0.52 1.09 0.36 1.23 1.63 0.30 0.86 0.00 0.45 0.28 1.12 0.00 0.57 0.80 0.56 1.62 0.00 0.60 0.00 0.00 0.00 0.56 0.00 0.00 1.01 0.25 0.49 0.00 0.00 0.54 0.00 0.50 0.14 0.00 K jcn_only_AD CG7845 chr2R - chr2R_1963620_1963707 chr2R_1963620_1963675 chr2R_1962569_1963619;chr2R_1963708_1963754 100.00 100.00 98.94 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.20 100.00 100.00 100.00 99.02 100.00 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 95.35 100.00 98.08 100.00 100.00 100.00 98.18 97.37 100.00 100.00 100.00 100.00 100.00 99.25 100.00 100.00 100.00 98.36 100.00 100.00 100.00 98.77 100.00 100.00 98.65 100.00 100.00 100.00 100.00 98.95 K intron_retention Cp1,Aats-phe chr2R + chr2R_9848382_9849724 chr2R_9848381_9848382;chr2R_9849724_9849725 chr2R_9848168_9848381;chr2R_9849725_9849841 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.06 0.00 0.00 0.04 0.12 0.13 0.00 0.17 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.03 0.06 0.00 0.00 K alternative_acceptor CG42390 chr3R + chr3R_17956315_17956373 chr3R_17956315_17956368 chr3R_17956306_17956314;chr3R_17956374_17956519 90.91 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA 90.00 90.91 NA NA NA NA NA NA NA K intron_retention I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,I_chr3R_17197790_17197863,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17196365_17200781 chr3R_17196364_17196365;chr3R_17200781_17200782 chr3R_17195823_17196364;chr3R_17200782_17200881 14.59 NA NA NA NA NA NA 21.43 12.50 NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.08 NA NA NA NA NA 5.56 NA 35.29 NA NA NA 0.00 NA 10.00 17.65 NA NA NA NA NA NA NA NA 12.00 K intron_retention I_chr3L_22859135_22860499,Ssl1,slif chr3L + chr3L_22872926_22872977 chr3L_22872925_22872926;chr3L_22872977_22872978 chr3L_22872584_22872925;chr3L_22872978_22874067 0.00 0.00 NA 23.08 7.14 NA NA 12.12 6.90 NA NA 0.00 NA 0.00 4.76 0.00 NA 0.00 NA 0.00 NA NA 0.00 0.00 NA NA 3.33 20.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 K intron_retention CG17002 chr2R + chr2R_2874439_2875142 chr2R_2874438_2874439;chr2R_2875142_2875143 chr2R_2874339_2874438;chr2R_2875143_2875164 52.63 55.56 NA NA NA NA NA NA 73.33 NA 82.35 66.67 88.89 NA NA NA NA NA NA 76.92 92.86 28.95 50.00 52.94 NA 55.56 66.67 46.15 43.75 26.67 NA 50.00 33.33 66.67 NA NA 45.00 41.18 35.29 50.00 42.86 66.67 NA 58.33 22.22 37.50 54.55 28.57 71.43 29.41 57.14 NA NA 35.71 NA 62.50 52.63 NA K alternative_donor CG9399,I_chr3R_5403032_5403329 chr3R - chr3R_5399318_5399515;chr3R_5399318_5399511;chr3R_5399318_5399863 chr3R_5399318_5399524 chr3R_5399076_5399317;chr3R_5399864_5399874 31.25 NA NA NA NA NA 25.00 NA 16.67 NA NA NA NA NA NA 75.00 NA NA NA 40.00 NA NA NA 40.00 NA NA NA NA NA NA 25.00 NA NA 37.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.11 NA 40.00 NA NA NA NA NA 25.00 NA K alternative_donor CG14741 chr3R - chr3R_7897251_7898049 chr3R_7897251_7898007 chr3R_7897104_7897250;chr3R_7898050_7898194 71.33 65.97 72.86 65.02 74.05 71.33 73.12 77.13 75.52 68.89 83.08 70.16 82.88 70.42 73.17 75.46 67.44 81.88 74.05 71.48 77.60 78.70 61.50 60.00 60.91 70.66 57.61 61.40 82.09 71.85 72.83 79.73 82.03 74.35 67.20 67.59 62.86 63.20 63.92 61.06 79.61 75.41 68.60 68.97 78.26 82.14 64.13 86.18 73.70 67.11 61.21 65.83 71.91 62.00 68.50 63.22 62.73 85.64 K jcn_only_AD CG7203,cdc14,RI_chr2L_7806524_7806667 chr2L - chr2L_7806524_7806667 chr2L_7806524_7806656 chr2L_7806424_7806523;chr2L_7806668_7806767 96.88 NA NA 95.00 NA NA NA NA 96.88 NA NA 100.00 NA 90.00 NA 92.00 NA NA NA 94.12 NA NA 92.86 100.00 NA NA 95.24 NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 NA 96.00 NA NA NA NA NA NA 96.88 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention I_chr2R_5046791_5046840,CG8046 chr2R - chr2R_5050980_5051207 chr2R_5050979_5050980;chr2R_5051207_5051208 chr2R_5050860_5050979;chr2R_5051208_5051486 26.32 NA NA NA NA NA NA 35.71 13.33 NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA 36.36 NA NA 25.00 NA NA NA NA NA NA NA 26.32 NA NA NA NA NA NA 27.78 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG7458 chr3L + chr3L_21948960_21949479 chr3L_21948960_21949415 chr3L_21948713_21948959;chr3L_21949480_21949583 14.29 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.56 K intron_retention CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4983916_4983982 chr2L_4983915_4983916;chr2L_4983982_4983983 chr2L_4983735_4983915;chr2L_4983983_4984609 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.06 0.00 3.23 0.00 0.00 0.00 1.72 2.27 2.78 2.94 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 11.11 12.50 0.00 0.00 0.00 0.00 4.35 0.00 2.94 0.00 3.39 0.00 0.00 3.77 13.04 0.00 0.00 0.00 4.76 0.00 0.00 0.00 1.27 0.00 3.85 0.00 0.00 NA 0.00 9.09 NA 0.00 K alternative_last_exon CD98hc,I_chr3R_3802791_3802855 chr3R - chr3R_3800588_3800858 chr3R_3800782_3800858 chr3R_3800094_3800587 chr3R_3800713_3800781 chr3R_3800859_3802135 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG7358,I_chrX_18786713_18786791,I_chrX_18786719_18786812 chrX - chrX_18786719_18786812 chrX_18786719_18786791 chrX_18786619_18786718;chrX_18786813_18786891 100.00 100.00 98.65 97.53 100.00 98.28 97.22 100.00 99.07 95.45 100.00 99.04 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 98.59 98.90 100.00 97.44 100.00 100.00 98.39 98.33 97.75 98.78 100.00 99.28 100.00 100.00 98.75 100.00 98.65 100.00 100.00 100.00 98.25 98.00 100.00 100.00 100.00 100.00 99.02 98.94 100.00 100.00 100.00 93.75 100.00 98.25 97.96 100.00 100.00 N alternative_donor CG8229,CG33199 chr2R - chr2R_4836447_4838210;chr2R_4836447_4837350 chr2R_4836447_4836515 chr2R_4835619_4836446;chr2R_4838211_4838296 23.81 23.81 27.64 16.60 28.86 18.46 24.20 18.66 16.63 21.38 28.49 15.11 30.34 18.75 18.62 25.43 28.97 35.86 19.70 16.48 23.03 36.41 20.59 23.85 20.92 24.58 22.87 34.87 24.29 30.66 21.80 32.03 18.30 28.22 20.00 37.58 21.09 22.91 17.06 19.59 28.71 17.35 23.13 19.27 54.21 30.48 28.87 23.64 27.83 22.66 20.83 28.85 24.00 32.09 31.31 23.67 25.35 52.77 K jcn_only_AD pes chr2L - chr2L_7991620_7994109;chr2L_7991620_7994134 chr2L_7991620_7993840 chr2L_7991358_7991619;chr2L_7994135_7994182 94.42 93.71 92.83 91.06 93.26 93.94 97.00 96.22 95.04 95.50 96.86 90.50 97.55 93.78 93.26 95.85 92.55 91.59 94.59 94.42 96.10 93.99 94.09 93.37 90.32 95.54 91.87 89.31 94.92 96.77 93.25 96.10 98.48 96.76 94.96 98.33 90.68 94.03 91.12 96.83 98.62 92.86 95.94 97.09 90.54 97.35 94.17 98.72 96.54 92.71 93.47 91.89 97.87 94.29 92.43 95.28 95.93 99.62 K jcn_only_AA CG12582 chr3R + chr3R_29885_29987;chr3R_29885_29940 chr3R_29885_29934 chr3R_29816_29884;chr3R_29988_30053 86.94 86.68 88.93 88.84 88.06 82.92 88.68 86.28 86.77 89.22 87.93 86.94 89.81 87.69 89.41 87.25 86.87 87.91 87.87 89.12 86.82 89.52 86.44 83.93 85.25 85.71 86.38 90.71 83.78 85.66 86.40 86.32 88.79 87.97 85.45 55.66 87.97 85.56 83.96 88.30 88.56 87.36 86.80 89.52 91.14 88.76 85.78 89.50 87.99 84.56 82.58 85.97 86.30 84.24 86.97 83.54 86.89 89.14 K intron_retention slpr,RI_chrX_8068601_8068855,I_chrX_8070488_8070786 chrX - chrX_8067495_8067893 chrX_8067494_8067495;chrX_8067893_8067894 chrX_8064750_8067494;chrX_8067894_8068008 0.00 0.00 0.00 5.71 0.00 0.00 0.00 2.33 1.67 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA SNF4Agamma,I_chr3R_16982134_16982890 chr3R + chr3R_16982134_16982890;chr3R_16982134_16983164;chr3R_16982134_16983218;chr3R_16982134_16983159 chr3R_16982134_16983336 chr3R_16982126_16982133;chr3R_16983337_16983376 0.00 NA 0.00 0.00 NA NA 0.00 1.92 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 3.23 NA NA 0.00 NA NA NA NA NA NA NA 1.89 NA NA NA NA NA NA 1.82 NA NA NA NA NA 0.00 NA NA 5.00 K intron_retention ssp4,I_chr2R_13409412_13410357,RI_chr2R_13409412_13411004,I_chr2R_13409412_13411328,I_chr2R_13409412_13411588,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13408434_13411328 chr2R_13408433_13408434;chr2R_13411328_13411329 chr2R_13408151_13408433;chr2R_13411329_13411403 75.73 NA NA 15.00 NA NA 76.47 81.82 82.35 NA NA 75.00 63.64 NA NA 100.00 66.67 NA 90.00 87.50 NA NA 63.64 NA NA NA NA NA NA NA NA NA NA 54.55 NA NA NA NA NA NA NA 61.11 NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG17683,I_chr2R_18774_18869 chr2R + chr2R_18774_18826;chr2R_18774_18869 chr2R_18774_18851 chr2R_18768_18773;chr2R_18870_18969 8.00 NA NA 8.00 NA NA 9.09 6.90 3.45 NA NA 5.00 13.04 NA NA NA NA NA NA 18.18 NA NA NA NA NA NA NA NA NA NA NA NA NA 5.00 NA NA NA NA NA NA NA 12.50 NA NA NA NA 10.00 NA 4.17 NA NA NA NA NA NA NA NA NA K jcn_only_AA mRpL20,I_chr3L_13010705_13010775,RI_chr3L_13010729_13010775 chr3L - chr3L_13010729_13010775;chr3L_13010705_13010775 chr3L_13010713_13010775 chr3L_13010776_13010875;chr3L_13010629_13010704 96.08 98.36 98.48 89.36 100.00 95.16 98.04 95.16 95.29 100.00 90.48 94.49 94.74 97.96 98.46 92.45 96.55 96.30 96.08 97.58 98.28 NA 95.77 88.71 88.57 96.72 98.11 95.83 94.12 97.44 82.09 96.55 94.00 96.00 91.43 96.97 93.88 96.08 96.88 98.72 100.00 94.05 96.61 90.62 95.59 93.83 95.83 97.62 97.25 91.43 95.77 94.29 95.52 97.50 98.48 98.48 98.57 97.50 K alternative_donor CaMKI,I_chr4_466377_467256,I_chr4_466377_467726,I_chr4_467072_467446,I_chr4_467378_467424,RI_chr4_467374_467424,RI_chr4_467482_467543,I_chr4_467862_471815,I_chr4_471136_473243,I_chr4_473338_473428,I_chr4_473517_473601 chr4 + chr4_466592_467726;chr4_466275_467726;chr4_466377_467726;chr4_467662_467726;chr4_467273_467726 chr4_466798_467726 chr4_467727_467826;chr4_466269_466274 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 K intron_retention C3G chrX - chrX_6681554_6681622 chrX_6681553_6681554;chrX_6681622_6681623 chrX_6681384_6681553;chrX_6681623_6682158 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 1.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545799_17545855;chr2R_17545781_17545855;chr2R_17545686_17545855 chr2R_17545615_17545855 chr2R_17545856_17545985;chr2R_17545613_17545614 71.08 NA NA 78.79 71.43 71.88 54.55 65.38 71.43 NA 59.09 71.88 NA NA 81.48 73.91 NA 67.65 NA 70.73 68.18 NA NA NA NA NA NA NA NA NA NA NA NA 68.75 NA NA NA NA NA NA NA 84.62 NA NA 68.18 NA NA NA 67.65 NA NA NA NA NA 75.68 NA NA NA K intron_retention CG14767,RI_chr2R_4610372_4610761 chr2R - chr2R_4607290_4607347 chr2R_4607289_4607290;chr2R_4607347_4607348 chr2R_4607151_4607289;chr2R_4607348_4607537 0.00 0.84 0.75 1.04 0.00 0.00 0.00 0.00 0.42 0.00 0.56 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.45 0.88 0.00 0.75 0.00 0.71 0.00 0.00 1.49 2.09 1.83 0.00 0.00 1.23 0.32 0.55 0.00 1.53 0.58 0.00 0.23 0.61 0.78 0.23 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.73 0.68 0.00 0.00 0.00 0.50 0.00 0.00 K intron_retention tra2,I_chr2R_10491279_10491488,REFI_chr2R_10491644_10491701 chr2R - chr2R_10491431_10491488 chr2R_10491430_10491431;chr2R_10491488_10491489 chr2R_10491239_10491430;chr2R_10491489_10491563 30.77 NA NA NA NA NA NA NA 35.71 NA NA 17.65 NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.77 NA 26.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N multi_cassette CG31619,I_chr2L_21725446_21728027 chr2L + chr2L_21719644_21728027 chr2L_21719644_21720358;chr2L_21720482_21725067;chr2L_21725446_21727005;chr2L_21727363_21727422;chr2L_21727574_21728027 chr2L_21720359_21720481;chr2L_21725068_21725445;chr2L_21727006_21727362;chr2L_21727423_21727573 chr2L_21719514_21719643;chr2L_21728028_21728127 100.00 100.00 100.00 81.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG8786 chr3L - chr3L_19633419_19634164;chr3L_19634085_19634164 chr3L_19633702_19634164 chr3L_19634165_19634318;chr3L_19632984_19633418 4.26 NA NA NA NA NA 4.17 0.00 NA NA NA 6.90 NA NA NA NA NA NA NA 2.78 NA NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 4.35 NA 0.00 NA NA NA NA NA NA 14.81 NA NA NA NA NA NA NA NA NA K alternative_last_exon plx,noncoding_14842 chr3R + chr3R_1511993_1512878,chr3R_1511993_1512866,chr3R_1511993_1512762 chr3R_1511993_1512510 chr3R_1512879_1513091 chr3R_1512511_1512761 chr3R_1511864_1511992 41.14 25.00 46.67 31.82 30.77 55.56 33.33 35.00 38.89 44.44 54.55 40.62 21.43 33.33 35.71 45.45 33.33 46.15 31.58 50.00 36.36 41.67 28.00 33.33 41.67 41.67 26.09 33.33 30.00 64.29 17.65 NA 56.25 42.86 45.45 61.11 30.77 25.00 35.71 44.44 60.00 43.33 42.86 42.86 NA 50.00 50.00 35.29 29.17 44.44 43.75 44.44 36.36 42.86 38.10 50.00 NA 30.00 N jcn_only_AD boi,I_chrX_2363445_2363896 chrX - chrX_2346181_2350623 chrX_2346181_2346377 chrX_2344936_2346180;chrX_2350624_2350719 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.73 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 K intron_retention Chc,RI_chrX_15728405_15729273,I_chrX_15728405_15729401,I_chrX_15728946_15729357 chrX - chrX_15728405_15729319 chrX_15728404_15728405;chrX_15729319_15729320 chrX_15728305_15728404;chrX_15729320_15729373 36.37 33.33 22.22 24.24 NA 30.77 35.48 32.35 37.84 NA NA 41.38 42.86 41.67 30.77 32.50 NA 56.25 34.38 35.90 NA 50.00 38.46 45.45 NA 35.29 NA NA 31.25 58.33 37.04 NA NA 41.46 40.00 14.29 NA 27.27 NA 53.33 NA 31.25 47.06 71.43 NA NA NA NA 35.90 NA 22.22 50.00 NA NA 36.84 NA NA NA K intron_retention Chrac-14,mus201 chr2L + chr2L_8438464_8438526 chr2L_8438463_8438464;chr2L_8438526_8438527 chr2L_8438293_8438463;chr2L_8438527_8438702 0.00 NA NA 25.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA K jcn_only_AD CG8468 chr2R + chr2R_10107651_10108112;chr2R_10107548_10108112;chr2R_10107621_10108112 chr2R_10107616_10108112 chr2R_10108113_10108270;chr2R_10107405_10107547 1.49 2.65 1.63 1.20 3.67 1.76 5.26 1.49 2.23 3.45 4.48 0.94 3.08 1.65 5.88 3.46 1.24 1.22 1.99 2.05 1.36 2.94 0.81 0.00 2.60 3.33 1.59 0.97 0.00 0.00 3.74 1.08 0.18 2.33 1.15 3.25 0.80 2.08 1.45 1.62 0.68 3.00 0.00 1.27 2.86 0.75 2.82 1.00 3.27 1.10 1.08 3.66 0.61 1.02 1.43 0.61 0.00 0.26 K cassette crol,I_chr2L_11799403_11802904 chr2L - chr2L_11797742_11798664 chr2L_11797742_11797828;chr2L_11798042_11798664 chr2L_11797829_11798041 chr2L_11797682_11797741;chr2L_11798665_11799010 93.07 94.78 92.34 87.63 91.01 95.70 93.78 96.40 91.61 91.32 90.06 94.91 92.59 94.34 91.16 93.10 93.12 93.58 98.82 93.07 91.62 76.20 93.74 91.92 91.89 95.05 94.49 90.74 88.32 91.24 94.55 94.76 92.50 94.18 90.67 87.25 92.89 93.85 94.12 88.53 93.18 92.39 93.67 93.19 86.44 92.28 92.24 92.13 92.07 94.49 93.68 94.29 92.61 93.64 92.42 94.34 93.37 95.15 K jcn_only_AD plexB,I_chr4_61912_62843 chr4 - chr4_61912_63539 chr4_61912_62843 chr4_61812_61911;chr4_63540_64403 3.35 1.69 2.61 7.87 0.00 2.63 6.51 2.73 2.69 2.08 0.00 6.86 1.92 2.08 5.83 3.54 4.40 7.35 3.30 5.11 2.63 NA 5.71 2.13 0.00 4.49 4.11 0.00 6.45 8.51 13.64 NA 0.97 3.41 4.35 6.06 0.00 0.00 0.00 2.20 5.56 4.07 8.22 3.12 NA 0.00 NA 3.48 4.69 NA 1.49 5.88 NA NA 2.48 NA NA 8.33 N intron_retention 4EHP,RI_chr3R_19927769_19928262,Syx1A chr3R - chr3R_19927769_19929293 chr3R_19927768_19927769;chr3R_19929293_19929294 chr3R_19927676_19927768;chr3R_19929294_19930269 40.43 36.36 36.84 47.41 32.65 38.46 62.20 63.16 38.00 64.86 68.89 40.62 36.54 40.98 33.93 68.54 20.34 38.30 39.29 49.06 100.00 49.35 37.50 26.67 54.84 50.94 46.03 51.43 45.45 52.78 47.95 56.00 49.21 39.62 47.06 44.12 27.87 26.00 33.33 37.04 63.16 42.72 35.85 32.84 37.14 38.78 37.14 40.30 45.61 52.00 46.43 30.61 39.29 36.84 32.20 33.33 40.43 53.70 K intron_retention shu chr2R - chr2R_19729776_19729850 chr2R_19729775_19729776;chr2R_19729850_19729851 chr2R_19729001_19729775;chr2R_19729851_19730601 0.00 0.00 5.00 30.00 0.00 6.25 13.64 0.00 6.98 NA NA 2.78 0.00 NA 6.67 0.00 NA 0.00 NA 10.00 0.00 25.00 0.00 0.00 0.00 0.00 6.06 NA 12.50 NA 25.00 NA NA 3.45 NA NA 2.50 4.17 0.00 2.94 NA 8.33 NA NA NA 5.56 0.00 NA 9.68 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K jcn_only_AD CHKov1,F_chr3R_21149619_21151172 chr3R - chr3R_21149651_21149744 chr3R_21149651_21149718 chr3R_21149588_21149650;chr3R_21149745_21149810 95.08 95.08 91.74 93.28 98.36 93.90 95.67 97.56 93.52 96.55 93.88 96.64 92.37 94.90 92.86 96.15 92.78 96.88 97.60 97.24 91.23 96.77 95.07 97.30 100.00 93.59 93.81 92.86 96.77 100.00 94.08 84.62 87.91 93.80 97.18 89.39 97.67 81.25 91.43 91.91 96.84 96.02 92.86 97.12 96.30 97.03 95.95 93.62 96.98 94.62 96.55 93.75 95.45 100.00 96.77 97.53 95.08 94.24 K intron_retention CG17724,Kdm4B,seq chr2R - chr2R_9070740_9072281 chr2R_9070739_9070740;chr2R_9072281_9072282 chr2R_9069819_9070739;chr2R_9072282_9072680 0.00 NA NA 10.53 NA NA NA NA 13.64 0.00 NA 0.00 NA NA NA 6.67 NA NA NA 14.29 NA 0.00 5.56 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 6.67 NA 0.00 NA NA NA NA NA NA NA K intron_retention CG9743,RI_chr3R_26025392_26028528 chr3R - chr3R_26024617_26028528 chr3R_26024616_26024617;chr3R_26028528_26028529 chr3R_26024216_26024616;chr3R_26028529_26028628 0.00 1.96 1.15 0.46 2.38 1.74 2.61 0.77 1.40 0.00 1.05 0.74 0.00 0.00 0.00 0.54 0.00 1.46 0.88 1.79 1.83 0.92 0.00 2.50 0.00 0.00 0.96 2.36 0.00 0.00 1.38 0.00 0.00 2.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.46 2.83 0.00 0.00 0.00 0.00 0.61 0.78 0.00 0.00 0.00 0.00 0.00 1.36 0.00 0.00 0.00 K intron_retention Mi-2,Su(Tpl),noncoding_13616,F_chr3L_19887973_19889888 chr3L - chr3L_19881715_19903142 chr3L_19881714_19881715;chr3L_19903142_19903143 chr3L_19881638_19881714;chr3L_19903143_19903321 2.56 2.56 6.82 4.62 0.00 0.00 3.85 4.88 6.76 0.00 0.00 3.95 4.17 0.00 10.42 5.06 9.09 2.56 4.65 3.57 6.45 7.55 5.97 6.25 0.00 0.00 0.00 5.26 1.61 5.48 5.56 0.00 3.19 5.80 2.13 0.00 0.00 0.00 0.00 2.88 0.00 5.00 0.00 0.00 0.00 3.17 0.00 2.15 5.38 0.00 1.72 0.00 3.23 0.00 3.57 0.00 0.00 3.28 K alternative_donor RpL28,RI_chr3L_3221710_3221877,I_chr3L_3221982_3222744,snoRNA:Or-CD11c,snoRNA:Or-CD11b,snoRNA:Or-CD11a,I_chr3L_3222575_3222787 chr3L - chr3L_3221982_3222152;chr3L_3221982_3222574;chr3L_3221982_3222926;chr3L_3221982_3222365;chr3L_3221982_3222847 chr3L_3221982_3222787 chr3L_3221882_3221981;chr3L_3222927_3222958 4.60 5.38 1.27 0.38 0.48 0.88 2.74 0.32 1.46 8.79 0.58 2.63 0.82 2.94 0.59 1.49 0.66 1.40 0.88 1.49 1.99 2.02 29.41 31.75 26.32 0.56 16.67 7.25 11.97 9.48 5.46 4.60 3.74 0.39 12.50 15.29 24.49 26.83 37.50 9.87 4.83 0.98 0.73 14.10 3.75 11.38 26.00 9.71 1.18 25.00 38.10 15.91 5.28 47.37 0.87 24.29 9.41 4.43 K jcn_only_AD Sec16,I_chrX_12501913_12502010,I_chrX_12502899_12502973 chrX + chrX_12499422_12501730 chrX_12500187_12501730 chrX_12501731_12501912 3.71 7.14 4.35 0.00 6.45 10.00 0.00 0.00 2.75 44.74 3.12 2.33 NA NA 7.41 0.00 6.45 0.00 0.00 2.52 0.00 14.71 2.91 2.04 4.44 NA 4.44 7.41 8.70 6.41 3.85 0.00 5.36 1.79 8.70 3.45 4.29 NA 2.38 4.71 21.43 2.53 NA 5.71 1.92 4.08 1.89 4.65 3.57 1.43 3.03 0.00 2.86 3.12 5.56 5.41 3.85 8.11 N jcn_only_AD bchs,I_chr2L_5907926_5908312 chr2L + chr2L_5907644_5908312;chr2L_5907926_5908312 chr2L_5907288_5908312 chr2L_5908313_5908412;chr2L_5907175_5907287 91.67 97.73 77.05 97.53 93.33 96.61 82.67 80.81 75.52 96.67 90.48 79.09 91.67 98.11 75.82 90.57 83.33 80.85 97.87 79.20 91.67 76.32 91.35 94.12 93.55 96.00 93.10 96.77 96.83 93.18 94.81 89.74 82.35 79.80 96.49 100.00 88.41 96.00 88.89 78.10 97.67 77.78 93.75 95.38 91.80 97.37 93.22 89.52 88.30 85.71 91.14 94.44 88.89 93.75 94.64 89.29 90.48 73.24 K alternative_donor exd chrX + chrX_15886884_15887504;chrX_15886821_15887504;chrX_15886888_15887504;chrX_15886827_15887504;chrX_15886958_15887504;chrX_15886802_15887504;chrX_15887006_15887504 chrX_15887147_15887504 chrX_15887505_15887806;chrX_15886739_15886801 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_acceptor lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22817840_22817968;chr2L_22817840_22817943 chr2L_22817840_22817891 chr2L_22817740_22817839;chr2L_22817969_22817982 96.30 95.74 96.30 93.18 94.29 92.68 96.70 96.12 97.66 95.00 97.22 97.94 98.25 98.33 98.04 98.88 92.45 97.50 94.92 93.50 96.30 96.23 98.21 97.67 97.67 97.67 98.00 95.83 96.15 94.74 94.44 100.00 100.00 99.06 94.87 93.75 91.30 97.37 97.67 96.83 100.00 94.44 98.00 100.00 88.89 94.59 94.12 95.24 99.08 94.29 100.00 95.00 96.30 94.74 97.01 97.22 93.75 100.00 K intron_retention mask,I_chr3R_20067941_20068405,I_chr3R_20073365_20073461 chr3R + chr3R_20067941_20068001 chr3R_20067940_20067941;chr3R_20068001_20068002 chr3R_20067841_20067940;chr3R_20068002_20068266 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ca,CG7802 chr3R + chr3R_25637546_25637605 chr3R_25637545_25637546;chr3R_25637605_25637606 chr3R_25637430_25637545;chr3R_25637606_25637775 0.00 0.00 0.00 2.50 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 K jcn_only_AA eIF2B-beta,RI_chrX_2598807_2598852 chrX + chrX_2598807_2598869 chrX_2598807_2598852 chrX_2598707_2598806;chrX_2598870_2598952 0.00 1.75 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.62 1.24 1.35 1.79 0.80 0.92 0.91 0.00 2.04 0.87 0.00 0.00 0.00 0.84 0.66 0.84 1.12 0.88 0.97 1.10 0.00 0.00 0.00 1.65 0.70 1.12 0.64 0.00 0.00 0.00 0.87 0.84 0.00 0.00 0.00 0.00 K jcn_only_AA CG17683,I_chr2R_18774_18869 chr2R + chr2R_18774_18851;chr2R_18774_18869 chr2R_18774_18826 chr2R_18768_18773;chr2R_18870_18969 89.66 NA NA 88.00 NA NA 90.91 89.66 93.10 NA NA 95.00 86.96 NA NA NA NA NA NA 81.82 NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA NA NA NA 83.33 NA NA NA NA 85.00 NA 95.83 NA NA NA NA NA NA NA NA NA K alternative_donor CG3829,I_chr2R_20874677_20875710,I_chr2R_20874711_20875717,I_chr2R_20875172_20875710,I_chr2R_20875497_20875710 chr2R + chr2R_20875497_20875710;chr2R_20875172_20875710;chr2R_20874711_20875710 chr2R_20875350_20875710 chr2R_20875711_20875810;chr2R_20874611_20874710 26.67 33.33 38.46 42.86 22.22 42.86 33.33 50.00 38.89 NA 42.86 26.67 33.33 66.67 42.86 53.85 37.50 27.27 42.86 32.00 60.00 25.00 12.50 10.00 NA 30.00 12.50 25.00 22.22 20.00 22.22 33.33 50.00 50.00 0.00 20.00 NA NA 16.67 18.18 12.50 35.71 14.29 14.29 25.00 0.00 0.00 14.29 36.36 10.00 0.00 0.00 NA NA 33.33 33.33 20.00 22.22 K alternative_acceptor Src42A chr2R + chr2R_1898274_1898445 chr2R_1898274_1898436 chr2R_1898115_1898273;chr2R_1898446_1898614 74.07 71.43 70.73 78.48 66.67 79.41 50.00 74.03 81.69 80.95 65.22 71.62 62.86 71.88 81.40 75.00 67.50 76.47 65.85 72.53 70.37 72.00 82.35 81.40 61.29 72.00 68.29 100.00 75.00 78.57 73.68 59.09 80.00 82.35 66.67 80.00 75.00 84.62 68.29 74.47 73.68 72.62 76.47 71.05 80.95 84.62 76.32 94.74 71.67 79.41 77.50 76.67 68.00 69.57 69.57 76.47 74.07 76.92 K alternative_acceptor CG3608 chr2R + chr2R_20500970_20501033 chr2R_20500970_20501030 chr2R_20500901_20500969;chr2R_20501034_20501099 97.47 100.00 100.00 100.00 100.00 91.67 100.00 95.83 100.00 100.00 NA 96.43 100.00 90.91 100.00 91.67 90.00 100.00 91.67 96.88 100.00 93.75 100.00 96.00 100.00 100.00 95.00 91.67 100.00 92.00 93.75 93.75 100.00 100.00 90.91 100.00 100.00 94.44 100.00 94.44 97.06 96.88 100.00 96.43 96.97 96.77 100.00 97.87 100.00 100.00 95.45 100.00 94.44 93.33 95.65 100.00 96.55 98.25 K alternative_donor CG7272 chr3L + chr3L_15494242_15495936 chr3L_15494361_15495936 chr3L_15495937_15496342;chr3L_15494055_15494241 100.00 98.61 98.86 99.07 100.00 100.00 98.84 99.09 99.33 100.00 100.00 99.27 100.00 100.00 98.78 98.90 100.00 98.63 100.00 100.00 100.00 100.00 98.98 100.00 98.08 100.00 98.80 100.00 97.96 98.68 98.75 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 99.13 100.00 100.00 100.00 100.00 100.00 99.03 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 98.78 100.00 100.00 100.00 K jcn_only_AA CG8080,RI_chr2R_4978542_4978911,REI_chr2R_4978545_4978911,REI_chr2R_4979159_4979234,I_chr2R_4979276_4979936 chr2R - chr2R_4978545_4978911;chr2R_4978542_4978911 chr2R_4978557_4978911 chr2R_4978912_4979011;chr2R_4978445_4978541 78.26 90.91 78.26 78.26 70.83 77.27 66.67 83.78 81.36 80.65 NA 92.86 90.00 72.00 80.39 86.96 90.00 75.00 69.57 68.18 NA NA 73.53 76.47 58.33 80.65 70.83 NA 82.61 85.29 78.12 87.10 85.37 75.51 NA 96.30 71.74 72.92 82.93 71.21 76.00 77.59 88.46 85.37 83.33 76.67 65.38 80.30 78.46 53.85 82.98 85.71 81.58 80.95 75.68 77.50 76.47 77.92 K jcn_only_AD RpL8,I_chr3L_2587513_2587750,I_chr3L_2587600_2587750,RI_chr3L_2587690_2587750,I_chr3L_2589746_2592161 chr3L + chr3L_2587600_2587750;chr3L_2587514_2587750 chr3L_2587690_2587750 chr3L_2587751_2587850;chr3L_2587500_2587513 0.04 0.08 0.00 0.04 0.00 0.00 0.04 0.01 0.05 0.03 0.00 0.02 0.14 0.07 0.02 0.00 0.00 0.00 0.02 0.03 0.07 0.09 0.07 0.02 0.06 0.04 0.02 0.03 0.03 0.11 0.22 0.00 0.03 0.05 0.36 0.07 0.03 0.06 0.03 0.12 0.04 0.01 0.00 0.05 0.07 0.14 0.18 0.14 0.04 0.08 0.09 0.11 0.06 0.30 0.05 0.03 0.04 0.02 K alternative_acceptor TfIIA-L chr3R + chr3R_23081693_23081763 chr3R_23081693_23081755 chr3R_23081448_23081692;chr3R_23081764_23081859 99.28 100.00 98.95 100.00 100.00 100.00 99.20 99.33 99.47 100.00 98.46 100.00 100.00 100.00 99.00 99.29 100.00 100.00 98.90 99.53 98.57 100.00 100.00 99.01 100.00 98.78 99.07 100.00 97.10 98.57 99.07 98.95 99.25 99.28 98.59 98.57 97.83 100.00 99.22 96.97 100.00 99.39 100.00 100.00 99.19 99.22 99.27 100.00 99.35 99.20 99.11 100.00 99.20 99.07 99.03 99.22 100.00 100.00 K mutually_exclusive CG10737 chr2R + chr2R_15061627_15062081,chr2R_15062289_15062386 chr2R_15061627_15061843,chr2R_15061871_15062386 chr2R_15062082_15062288 chr2R_15061844_15061870 chr2R_15061209_15061626;chr2R_15062387_15062591 0.00 NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA NA 0.00 0.00 0.00 K mutually_exclusive CG10103,noncoding_10997 chr3L - chr3L_6747594_6748046,chr3L_6748224_6748519 chr3L_6747594_6747844,chr3L_6747908_6748519 chr3L_6748047_6748223 chr3L_6747845_6747907 chr3L_6747493_6747593;chr3L_6748520_6749258 77.50 90.48 77.27 75.76 80.00 73.91 8.00 62.50 90.32 66.67 61.90 86.49 84.62 69.23 69.23 62.96 78.57 65.38 80.00 68.09 63.64 87.14 85.71 84.62 55.00 58.82 75.86 77.78 41.67 90.91 89.29 77.50 87.04 82.61 87.50 84.38 89.66 62.50 86.67 70.27 57.14 78.85 62.50 83.33 72.09 75.81 82.14 85.37 83.33 75.00 89.29 78.57 68.42 85.19 69.23 76.47 88.89 70.65 K jcn_only_AA CG1140,I_chr3L_1964610_1964836 chr3L + chr3L_1964610_1965074;chr3L_1964610_1964836 chr3L_1964610_1965059 chr3L_1964541_1964609;chr3L_1965075_1965273 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 0.00 0.00 1.79 1.02 0.00 2.50 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG31777,RI_chr2L_3706792_3706842,cutlet chr2L - chr2L_3706792_3706921 chr2L_3706792_3706842 chr2L_3706692_3706791;chr2L_3706922_3706942 1.18 0.51 0.99 1.48 1.94 1.98 1.12 1.57 2.13 2.00 1.06 1.17 3.45 1.90 2.40 3.21 1.43 2.38 2.97 0.28 2.90 1.85 1.25 1.13 0.87 0.85 0.69 0.00 1.79 1.68 0.98 0.00 2.47 1.99 0.93 0.79 0.53 0.77 0.49 0.95 0.85 1.92 1.49 0.78 1.05 1.29 0.70 0.75 1.41 1.18 1.01 0.78 0.60 0.53 1.59 1.19 2.04 1.82 K intron_retention CG10628 chr2L - chr2L_19758473_19758531 chr2L_19758472_19758473;chr2L_19758531_19758532 chr2L_19757950_19758472;chr2L_19758532_19758717 0.00 0.00 0.00 13.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 7.69 0.00 0.00 0.00 0.00 0.00 0.00 5.56 NA 0.00 0.00 0.00 NA 0.00 5.88 0.00 NA 6.25 7.41 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 1.96 NA 6.25 0.00 5.13 0.00 0.00 3.03 NA 5.13 0.00 8.11 0.00 0.00 0.00 2.70 0.00 0.00 0.00 K jcn_only_AA Ptpmeg,I_chr3L_352569_352614,I_chr3L_352569_352628,I_chr3L_353688_353782,I_chr3L_355125_355175 chr3L + chr3L_352569_352629 chr3L_352569_352614 chr3L_352476_352568;chr3L_352630_352714 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 2.27 0.00 0.00 1.82 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 1.05 0.99 2.30 1.85 2.22 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 2.56 0.00 0.00 1.32 0.00 0.00 2.86 1.06 0.00 0.00 1.18 0.00 0.00 0.00 5.71 0.00 0.00 0.00 K intron_retention CG7878,I_chr3R_3952846_3953762 chr3R + chr3R_3949790_3949851 chr3R_3949789_3949790;chr3R_3949851_3949852 chr3R_3949281_3949789;chr3R_3949852_3950487 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 1.54 4.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor AcCoAS,I_chr3L_21265768_21265818,I_chr3L_21265768_21265914 chr3L - chr3L_21265768_21265914 chr3L_21265768_21265822 chr3L_21265668_21265767;chr3L_21265915_21265918 100.00 100.00 98.55 98.84 100.00 100.00 100.00 98.92 99.20 100.00 100.00 99.07 100.00 100.00 98.48 98.53 97.92 100.00 100.00 100.00 98.11 100.00 100.00 98.39 97.06 98.28 100.00 100.00 100.00 100.00 97.30 97.62 97.56 98.91 96.88 100.00 98.33 100.00 100.00 98.59 96.77 98.35 97.78 100.00 100.00 96.05 100.00 97.73 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 97.50 K alternative_acceptor Sap47,I_chr3R_11761076_11761674,I_chr3R_11761436_11761674,F_chr3R_11761635_11761698,E_chr3R_11761635_11761703 chr3R + chr3R_11761307_11761561;chr3R_11761307_11761698;chr3R_11761307_11761703 chr3R_11761307_11761674 chr3R_11761299_11761306;chr3R_11761704_11761774 63.04 59.26 66.67 52.50 55.00 63.64 67.65 55.10 65.67 40.00 72.00 62.00 70.00 48.28 53.33 64.58 55.56 60.00 61.76 68.25 69.57 43.33 70.00 66.67 60.00 68.00 67.74 54.55 56.67 58.06 62.50 68.42 56.82 61.22 66.67 64.52 60.00 70.83 65.38 63.04 64.71 66.67 58.33 63.64 68.18 68.75 57.69 66.67 63.83 62.50 67.50 59.09 66.67 55.56 57.14 43.75 53.33 72.92 K intron_retention CG1674,F_chr4_258186_259747,R_chr4_261460_261560,I_chr4_263840_263891,I_chr4_264634_265805 chr4 + chr4_263306_263795 chr4_263305_263306;chr4_263795_263796 chr4_263273_263305;chr4_263796_263839 24.23 24.14 23.81 29.17 NA 40.00 44.00 18.33 33.96 NA 7.69 29.41 50.00 25.93 24.32 25.00 33.33 15.38 30.56 33.33 30.00 NA 23.81 19.05 NA 43.75 15.38 NA NA NA 27.27 NA NA 24.49 20.00 NA NA 15.38 16.67 29.41 NA 22.00 32.14 NA NA 20.00 16.67 NA 25.49 13.79 15.79 15.00 NA 45.45 21.05 20.00 16.67 NA K intron_retention Atf-2 chr2R + chr2R_20758769_20758821 chr2R_20758768_20758769;chr2R_20758821_20758822 chr2R_20757624_20758768;chr2R_20758822_20759083 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 4.35 NA NA 0.00 0.00 NA NA 12.50 NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 K cassette cals,I_chr4_1139644_1142084,RI_chr4_1141233_1142084 chr4 - chr4_1141233_1142084 chr4_1141233_1141284;chr4_1141428_1142084 chr4_1141285_1141427 chr4_1141133_1141232;chr4_1142085_1142184 100.00 94.74 100.00 100.00 100.00 100.00 98.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 88.89 85.71 94.12 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 100.00 95.24 NA 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Ptpmeg,I_chr3L_352569_352614,I_chr3L_352569_352628,I_chr3L_353688_353782,I_chr3L_355125_355175 chr3L + chr3L_352569_352629 chr3L_352569_352614 chr3L_352476_352568;chr3L_352630_352714 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 K jcn_only_AD CG10188 chr2L - chr2L_19508266_19508416;chr2L_19508266_19508325 chr2L_19508266_19508351 chr2L_19507490_19508265;chr2L_19508417_19508726 0.00 NA NA NA NA NA NA 4.55 3.57 NA NA 0.00 NA NA NA 0.00 NA NA NA 3.85 NA 3.45 0.00 NA NA NA NA NA 0.00 NA NA NA NA 0.00 5.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA K intron_retention mrj,I_chr2R_12093585_12095708,I_chr2R_12093585_12096954,I_chr2R_12093585_12097211,I_chr2R_12093585_12097256,I_chr2R_12093585_12097522,I_chr2R_12093733_12097526,RI_chr2R_12093733_12108627,tRNA:CR30237,tRNA:CR30238,I_chr2R_12108655_12109044,I_chr2R_12108697_12109174 chr2R - chr2R_12093585_12093676 chr2R_12093584_12093585;chr2R_12093676_12093677 chr2R_12093485_12093584;chr2R_12093677_12093732 0.00 NA NA 0.00 NA NA 31.58 11.76 0.00 NA NA 0.00 NA NA NA NA NA NA 7.14 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Fcp1 chr2R - chr2R_20458551_20458640 chr2R_20458550_20458551;chr2R_20458640_20458641 chr2R_20458457_20458550;chr2R_20458641_20459106 0.00 0.00 NA NA NA 5.26 0.00 0.00 7.14 NA 0.00 6.25 NA NA 0.00 0.00 NA 3.85 0.00 2.17 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K alternative_acceptor CG3419 chr2R + chr2R_20301935_20301994;chr2R_20301935_20301990 chr2R_20301935_20302017 chr2R_20299701_20301934;chr2R_20302018_20302306 86.19 NA NA NA NA NA NA 87.50 86.67 NA NA 85.71 NA NA NA 81.82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor exd chrX + chrX_15887147_15887504;chrX_15886884_15887504;chrX_15886821_15887504;chrX_15886888_15887504;chrX_15886827_15887504;chrX_15886958_15887504;chrX_15887006_15887504 chrX_15886802_15887504 chrX_15887505_15887806;chrX_15886739_15886801 0.00 NA NA 0.00 NA NA 0.00 25.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention CG10103,noncoding_10997 chr3L - chr3L_6748037_6748172 chr3L_6748036_6748037;chr3L_6748172_6748173 chr3L_6747973_6748036;chr3L_6748173_6748223 47.22 41.67 52.94 36.84 50.00 40.00 52.00 30.77 37.50 87.50 41.67 48.48 52.94 46.67 NA 44.44 NA 34.78 52.94 53.12 53.33 26.47 59.09 41.67 91.67 92.86 57.14 70.59 44.44 40.00 47.37 52.38 33.33 51.85 41.67 40.00 47.06 41.67 35.00 51.72 63.33 50.00 63.64 36.36 55.56 44.44 36.84 35.48 46.88 40.91 55.56 NA 55.56 50.00 39.13 33.33 56.25 47.37 K alternative_donor CG12163,I_chr3R_1068862_1077145,RI_chr3R_1069977_1077139 chr3R - chr3R_1069977_1077145 chr3R_1069977_1077139 chr3R_1069877_1069976;chr3R_1077146_1077239 66.67 71.43 62.07 86.36 77.78 84.00 84.00 69.57 75.47 52.38 73.33 52.05 54.55 94.12 77.14 78.95 82.35 93.75 92.86 68.89 46.67 87.10 60.00 62.50 75.00 65.00 68.75 50.00 59.38 64.00 66.67 10.53 46.81 76.47 67.86 22.92 70.83 60.71 56.25 40.00 20.00 73.58 84.21 57.89 10.34 14.81 NA 53.85 82.50 NA 74.07 63.16 29.41 NA 87.10 25.00 NA 26.32 K alternative_donor skd chr3L - chr3L_21018649_21020395;chr3L_21018649_21020285;chr3L_21018649_21020239 chr3L_21018649_21019229 chr3L_21018052_21018648;chr3L_21020396_21020501 15.48 NA NA 12.50 NA NA 9.09 16.67 18.18 NA NA 12.50 11.11 14.29 NA 5.88 NA NA NA 16.67 NA 25.00 12.50 NA NA NA 25.00 NA 40.00 50.00 NA NA 14.29 8.33 NA 20.00 NA NA NA 20.00 NA 8.33 16.67 25.00 NA NA NA 14.29 10.00 NA NA NA NA NA 16.67 NA NA NA K jcn_only_AD BtbVII,I_chr3L_3150858_3150927,I_chr3L_3151185_3151263 chr3L + chr3L_3151173_3151263 chr3L_3151185_3151263 chr3L_3151264_3151363;chr3L_3151085_3151172 1.99 2.09 0.64 2.35 0.00 3.29 2.34 1.99 2.25 2.20 1.20 1.79 4.17 3.31 10.67 0.00 2.70 3.28 1.87 1.46 0.00 2.92 2.59 3.97 0.94 2.06 0.85 4.78 2.53 1.71 5.81 3.21 1.72 2.23 0.97 0.84 2.07 1.23 2.13 1.83 1.12 1.69 0.95 4.07 0.70 2.29 2.54 1.56 1.78 1.23 1.79 1.32 2.05 1.79 2.84 0.95 1.36 2.06 K jcn_only_AD trio,I_chr3L_999683_1009321 chr3L - chr3L_1009740_1024203 chr3L_1009740_1018561 chr3L_1009445_1009739 2.86 4.35 2.86 5.00 4.76 0.00 3.33 0.00 2.99 3.92 NA 1.45 NA 0.00 2.44 0.00 0.00 0.00 10.00 1.32 7.14 12.50 0.00 4.69 5.00 5.26 3.28 NA 2.70 5.77 0.00 6.90 2.78 0.00 4.88 7.84 1.23 2.99 4.71 3.61 NA 0.00 0.00 1.72 2.27 2.13 2.17 0.00 1.96 4.55 1.27 5.00 0.00 2.17 5.56 2.86 5.41 3.33 K jcn_only_AD larp,F_chr3R_24151542_24153876,I_chr3R_24160430_24160932,I_chr3R_24160430_24160971,RI_chr3R_24160430_24161527 chr3R - chr3R_24160430_24161729;chr3R_24160430_24160932;chr3R_24160430_24160975;chr3R_24160430_24160979;chr3R_24160430_24161939;chr3R_24160430_24161527 chr3R_24160430_24160971 chr3R_24160330_24160429;chr3R_24161940_24162125 2.86 1.75 2.68 3.75 2.86 0.00 1.86 2.46 3.08 1.12 4.60 1.67 4.03 1.60 1.52 2.65 3.47 1.55 1.84 2.91 2.78 5.88 3.45 2.17 2.30 0.00 2.55 1.36 7.14 0.84 4.20 4.35 1.91 1.26 1.77 5.04 2.82 6.60 6.72 4.91 4.94 2.74 4.55 4.41 0.00 7.27 0.00 10.53 3.17 1.92 2.96 2.06 3.03 3.85 3.41 3.17 6.17 4.70 K jcn_only_AD Nipped-B,I_chr2R_580989_582555,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_580989_582623 chr2R_580989_582555 chr2R_580930_580988;chr2R_582624_582655 2.70 3.12 6.82 6.35 9.09 6.67 4.52 0.00 2.11 NA 2.70 2.00 1.67 0.00 2.04 3.77 5.17 0.00 4.94 2.41 2.94 0.00 7.84 4.88 6.90 9.30 5.45 0.00 5.00 0.00 1.27 4.17 NA 1.80 6.67 0.00 3.23 NA NA 6.12 NA 5.43 2.00 2.13 NA 0.00 NA 3.33 2.68 0.00 4.44 2.44 NA 0.00 0.00 0.00 4.76 0.00 K intron_retention CG11242,Oseg6 chr2R - chr2R_15373610_15373673 chr2R_15373609_15373610;chr2R_15373673_15373674 chr2R_15373488_15373609;chr2R_15373674_15374045 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.21 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention egh,mit(1)15 chrX + chrX_2491049_2491359 chrX_2491048_2491049;chrX_2491359_2491360 chrX_2489759_2491048;chrX_2491360_2492493 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.60 0.00 0.00 3.51 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention l(2)37Cc,l(2)37Cb chr2L - chr2L_19123557_19123756 chr2L_19123556_19123557;chr2L_19123756_19123757 chr2L_19123178_19123556;chr2L_19123757_19123857 0.35 0.00 0.00 1.06 0.00 0.00 1.40 0.86 0.90 0.00 0.00 0.48 0.00 0.85 2.50 1.46 0.00 0.00 0.00 1.96 0.00 1.24 0.35 0.78 0.53 0.93 0.73 1.86 2.45 0.00 0.59 0.00 0.00 2.73 0.00 0.00 0.38 0.00 0.00 0.77 0.00 1.65 0.00 0.83 0.00 0.00 0.00 3.45 1.07 1.47 0.71 0.00 0.00 0.00 1.50 0.87 0.00 0.00 K intron_retention elm chr3R - chr3R_1478257_1478930 chr3R_1478256_1478257;chr3R_1478930_1478931 chr3R_1478103_1478256;chr3R_1478931_1479476 100.00 100.00 100.00 100.00 100.00 100.00 99.48 100.00 99.66 100.00 100.00 100.00 100.00 100.00 99.30 100.00 99.05 99.11 100.00 100.00 99.08 100.00 99.03 100.00 100.00 100.00 100.00 98.80 100.00 100.00 99.28 98.70 100.00 99.52 98.46 100.00 100.00 100.00 100.00 99.25 100.00 99.64 100.00 99.05 99.00 99.22 100.00 100.00 99.59 99.42 100.00 100.00 100.00 98.53 100.00 100.00 99.43 99.34 K jcn_only_AA CG8963,I_chr2R_12906431_12906583,I_chr2R_12906930_12906989 chr2R - chr2R_12906431_12906937;chr2R_12906855_12906937 chr2R_12906827_12906937 chr2R_12906938_12907019 67.35 62.50 60.00 75.38 NA 63.64 70.83 65.79 50.82 NA NA 67.31 75.76 83.33 71.43 66.67 48.28 NA 72.97 76.92 NA 42.86 81.58 69.23 NA NA NA 73.68 NA 76.92 95.24 NA 83.33 77.27 NA 90.91 58.33 71.43 NA 67.39 NA 66.67 59.09 56.25 NA 45.45 72.73 54.55 65.96 55.56 56.76 76.19 NA NA 58.33 NA 66.67 75.00 K jcn_only_AD ligatin,Slbp chr3R - chr3R_24976954_24977016 chr3R_24976954_24977011 chr3R_24975609_24976953;chr3R_24977017_24977494 100.00 100.00 98.44 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 97.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.75 100.00 98.08 100.00 98.68 100.00 99.49 100.00 98.67 97.98 99.34 100.00 100.00 100.00 100.00 100.00 98.90 100.00 100.00 100.00 100.00 100.00 100.00 99.24 100.00 99.48 100.00 100.00 98.55 100.00 100.00 100.00 98.36 100.00 100.00 100.00 K jcn_only_AD Mgat2,I_chr3R_25845406_25845472,I_chr3R_25845406_25846373 chr3R - chr3R_25845406_25847371;chr3R_25845406_25846373;chr3R_25845406_25847670 chr3R_25845406_25845472 chr3R_25845317_25845405;chr3R_25847671_25847898 4.00 0.00 4.55 7.69 NA NA NA NA 6.90 NA NA 4.00 NA NA NA 4.55 NA NA NA 7.32 NA 35.48 5.26 3.45 NA NA 0.00 NA 17.39 0.00 NA NA NA 3.85 4.35 0.00 7.14 0.00 11.11 2.50 NA 6.67 NA 0.00 NA 4.17 9.68 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA NA K intron_retention CG8949,I_chrX_16971501_16971713 chrX - chrX_16966898_16966978 chrX_16966897_16966898;chrX_16966978_16966979 chrX_16966823_16966897;chrX_16966979_16967230 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA I_chr2R_9844856_9845327,CG13349,RI_chr2R_9846641_9846709 chr2R - chr2R_9847607_9847732 chr2R_9847615_9847732 chr2R_9847733_9847733;chr2R_9847073_9847606 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.69 100.00 100.00 100.00 100.00 99.04 99.28 100.00 100.00 100.00 99.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_donor Hcf,I_chr4_391984_392875 chr4 + chr4_380602_381212;chr4_380911_381212;chr4_380646_381212;chr4_380607_381212 chr4_380985_381212 chr4_381213_381632;chr4_380600_380601 14.29 20.00 14.29 43.48 0.00 33.33 31.25 5.56 37.04 50.00 0.00 50.00 40.00 44.44 0.00 50.00 12.50 0.00 25.00 11.11 0.00 0.00 20.00 20.00 0.00 16.67 25.00 0.00 0.00 50.00 0.00 NA 0.00 35.29 0.00 16.67 50.00 NA NA 14.29 NA 13.33 12.50 20.00 NA NA NA 20.00 42.86 0.00 0.00 25.00 NA NA 0.00 NA 0.00 0.00 K jcn_only_AD CG18811,I_chr3L_18664773_18665233 chr3L - chr3L_18664773_18665730 chr3L_18664773_18665233 chr3L_18664673_18664772;chr3L_18665731_18666269 0.55 0.55 0.63 0.00 0.00 0.00 0.42 0.44 0.84 0.76 0.69 0.63 0.00 0.00 0.00 0.00 0.70 1.04 0.00 0.32 0.00 0.00 0.74 1.46 2.26 0.00 0.93 0.45 0.78 0.55 2.29 0.00 0.46 0.41 0.00 0.00 0.36 0.00 0.43 1.74 1.90 1.14 0.00 1.32 0.71 1.64 1.86 0.66 0.82 1.56 1.24 0.00 0.00 0.00 0.50 0.80 0.78 1.09 K intron_retention RPA2,RI_chr2L_20925851_20925909 chr2L - chr2L_20925844_20925909 chr2L_20925843_20925844;chr2L_20925909_20925910 chr2L_20925751_20925843;chr2L_20925910_20925975 100.00 100.00 95.00 100.00 100.00 100.00 92.31 95.83 100.00 100.00 100.00 94.74 100.00 NA 100.00 100.00 100.00 NA 100.00 97.06 100.00 96.67 97.30 100.00 100.00 100.00 96.43 100.00 96.88 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 95.00 100.00 97.92 K cassette CG14741 chr3R - chr3R_7899339_7900895 chr3R_7899339_7900180;chr3R_7900593_7900895 chr3R_7900181_7900592 chr3R_7899048_7899338;chr3R_7900896_7901144 34.99 36.20 35.81 38.19 17.41 22.67 33.94 38.78 32.70 24.04 19.59 40.23 6.60 30.65 32.28 57.30 41.18 34.15 28.45 30.36 38.94 34.77 44.04 31.60 43.07 29.96 27.27 22.11 49.47 32.42 61.05 35.00 52.94 32.00 38.02 62.15 32.70 28.77 34.99 15.57 43.66 36.27 34.07 41.57 55.07 49.13 33.81 37.29 42.23 24.00 29.45 30.43 63.91 53.09 34.41 47.50 56.21 51.67 K intron_retention Reg-5,I_chr2R_20676374_20676658,RI_chr2R_20676692_20676888 chr2R - chr2R_20676374_20676501 chr2R_20676373_20676374;chr2R_20676501_20676502 chr2R_20676274_20676373;chr2R_20676502_20676691 2.56 2.35 5.80 5.19 3.70 1.59 1.92 2.27 3.79 2.38 0.00 0.00 0.00 1.79 0.00 0.00 0.00 4.00 3.33 4.29 0.00 11.43 3.19 3.88 3.85 0.00 6.10 0.00 5.88 0.00 4.00 2.70 2.38 3.16 7.55 2.90 4.23 2.22 3.12 3.41 2.56 2.50 4.17 4.11 0.00 0.00 1.67 3.85 3.60 4.49 2.20 3.77 0.00 2.25 5.48 0.00 0.00 0.00 K intron_retention Reps,I_chr2L_11105525_11105656 chr2L - chr2L_11103170_11103843 chr2L_11103169_11103170;chr2L_11103843_11103844 chr2L_11100956_11103169;chr2L_11103844_11104280 0.00 0.00 0.00 3.85 NA 0.00 0.00 0.00 3.92 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 8.11 0.00 12.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 4.17 0.00 2.44 0.00 3.03 4.44 NA 6.12 NA 0.00 NA NA 0.00 0.00 4.76 0.00 0.00 0.00 0.00 NA 0.00 NA 3.45 0.00 K intron_retention CstF-64,Gos28,CG31231 chr3R + chr3R_14485564_14485626 chr3R_14485563_14485564;chr3R_14485626_14485627 chr3R_14485355_14485563;chr3R_14485627_14486850 0.00 NA NA 4.76 NA 0.00 14.29 0.00 3.85 0.00 NA 0.00 NA NA 0.00 NA NA NA 14.29 4.35 NA NA NA NA NA 20.00 7.69 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA NA 4.17 0.00 0.00 NA 0.00 3.85 5.71 NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 1.82 K intron_retention Chd64,ens,I_chr3L_4130719_4131120 chr3L - chr3L_4115143_4115304 chr3L_4115142_4115143;chr3L_4115304_4115305 chr3L_4114270_4115142;chr3L_4115305_4115646 0.45 1.00 0.00 0.40 0.00 0.46 0.40 0.86 0.72 0.40 0.18 1.05 0.76 0.26 0.31 0.22 0.45 0.00 0.00 0.55 0.00 0.80 0.49 0.71 0.60 0.45 1.10 1.03 0.86 0.63 0.26 0.21 0.55 0.69 0.00 0.64 0.92 0.35 0.43 0.59 0.00 0.51 0.00 0.71 0.43 0.43 0.30 0.78 0.67 0.41 1.07 0.29 0.13 0.92 0.84 0.33 0.23 0.20 K intron_retention rad50,ppk12 chr2R + chr2R_18311777_18311836 chr2R_18311776_18311777;chr2R_18311836_18311837 chr2R_18311516_18311776;chr2R_18311837_18311939 0.00 4.00 0.00 0.00 0.00 0.00 2.22 0.00 1.19 NA 0.00 1.82 0.00 6.67 3.23 3.12 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.65 NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA 2.70 5.56 2.13 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 9.52 0.00 0.00 0.00 NA N jcn_only_AD None chrU + chrU_1179335_1184352 chrU_1184302_1184352 100.00 100.00 100.00 89.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG14937,crol,I_chr2L_11799403_11802904 chr2L - chr2L_11793947_11794025 chr2L_11793946_11793947;chr2L_11794025_11794026 chr2L_11793863_11793946;chr2L_11794026_11794190 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N jcn_only_AA CG6701,RI_chr2R_9866896_9867532,noncoding_6685 chr2R - chr2R_9866896_9867532 chr2R_9866924_9867532 chr2R_9867533_9867623;chr2R_9866796_9866895 72.61 NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA 65.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention F_chr2L_2767950_2768071,CG15399 chr2L - chr2L_2771606_2771674 chr2L_2771605_2771606;chr2L_2771674_2771675 chr2L_2770884_2771605;chr2L_2771675_2771920 20.73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 26.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 15.38 30.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.00 NA K jcn_only_AD ena chr2R + chr2R_15029352_15029711;chr2R_15029330_15029711 chr2R_15029276_15029711 chr2R_15029712_15029859;chr2R_15029150_15029275 97.56 NA 95.00 93.75 96.30 NA 100.00 NA 98.33 100.00 NA 95.35 95.83 96.88 86.36 96.83 100.00 NA 95.24 96.00 NA NA 100.00 100.00 NA NA 100.00 NA NA 90.62 100.00 NA 95.24 97.56 100.00 96.67 NA 100.00 NA 100.00 NA 94.59 100.00 95.65 NA NA NA NA 100.00 NA 97.62 96.00 NA NA 100.00 NA 100.00 NA K intron_retention CG33170,RI_chr3L_22859073_22860499,I_chr3L_22859135_22860499 chr3L + chr3L_22859073_22860499 chr3L_22859072_22859073;chr3L_22860499_22860500 chr3L_22859035_22859072;chr3L_22860500_22860559 81.98 88.24 81.82 96.30 NA 75.00 85.19 82.14 83.33 66.67 100.00 83.87 95.00 78.95 86.67 76.67 90.00 80.00 75.00 81.82 88.89 90.00 77.78 90.48 83.33 69.23 83.33 69.23 78.95 86.67 88.89 64.00 75.86 79.41 94.44 90.00 92.86 75.00 86.67 94.44 70.00 87.50 81.82 94.44 70.37 85.29 84.62 73.08 75.86 76.00 72.00 76.47 73.68 77.78 84.62 84.62 80.95 70.73 K alternative_donor foi,I_chr3L_8520658_8520733,I_chr3L_8524905_8524976 chr3L + chr3L_8518490_8523659;chr3L_8518805_8523659 chr3L_8518753_8523659 chr3L_8523660_8524249;chr3L_8518407_8518489 2.38 1.18 3.03 2.40 1.30 3.30 0.85 2.26 2.54 2.35 1.19 2.65 1.43 4.71 3.81 2.78 1.30 0.00 1.18 0.50 1.32 2.94 4.14 5.31 1.14 4.76 3.81 6.73 7.22 2.46 2.06 2.78 1.09 0.77 1.10 0.85 6.47 5.21 6.21 2.54 1.10 2.96 1.43 0.91 1.35 3.03 4.29 1.46 5.16 3.08 2.38 1.41 1.39 2.13 3.54 4.05 1.59 0.72 K alternative_acceptor p47,Aldh-III,I_chr2R_3356541_3356614,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3352775_3352835 chr2R_3352792_3352835 chr2R_3352836_3353180;chr2R_3352504_3352774 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.38 0.00 0.00 0.34 0.00 0.00 0.00 0.00 K intron_retention Jupiter,I_chr3R_7417030_7419354,I_chr3R_7418347_7445425,RE_chr3R_7419487_7429863,I_chr3R_7429934_7430307,I_chr3R_7429962_7445425,I_chr3R_7430006_7445425,RI_chr3R_7442748_7445425,RI_chr3R_7442793_7445425 chr3R - chr3R_7418347_7419354 chr3R_7418346_7418347;chr3R_7419354_7419355 chr3R_7418247_7418346;chr3R_7419355_7419454 0.56 0.49 0.33 1.47 0.00 0.79 1.50 0.47 1.13 0.45 0.00 1.72 0.00 1.30 0.56 0.00 0.79 0.00 1.27 0.74 0.99 0.63 0.92 1.25 0.45 0.00 0.42 0.21 0.52 0.73 0.70 0.15 0.22 0.22 0.88 0.00 0.67 0.22 0.34 0.77 0.19 0.81 0.84 0.87 0.15 0.32 0.68 0.85 0.61 0.52 0.41 0.71 1.14 0.76 1.32 0.45 0.48 0.09 K jcn_only_AD CG4896,REI_chr2L_1179197_1179859,I_chr2L_1191535_1191648 chr2L + chr2L_1177862_1177947 chr2L_1177869_1177947 chr2L_1177948_1178044;chr2L_1177765_1177861 19.09 NA NA NA NA NA NA NA 3.85 NA NA 10.00 NA NA NA 8.70 NA NA NA 25.00 NA 10.71 NA NA NA NA NA NA 29.17 NA 24.39 NA NA 15.38 NA NA 30.00 NA 20.00 13.64 28.57 18.18 NA NA 10.00 27.78 NA 16.67 17.24 24.00 28.00 NA NA NA NA NA NA 37.04 K jcn_only_AD Qm,RI_chr3L_23084218_23087783,REI_chr3L_23086979_23087779,RE_chr3L_23086979_23087782,I_chr3L_23087712_23087783,E_chr3L_23087825_23087922,RI_chr3L_23087947_23088093 chr3L - chr3L_23086979_23087783 chr3L_23086979_23087779 chr3L_23086879_23086978;chr3L_23087784_23087824 0.00 0.00 0.00 0.02 0.03 0.00 0.00 0.02 0.00 0.00 0.03 0.00 0.00 0.02 0.00 0.01 0.00 0.00 0.00 0.03 0.03 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.01 0.07 0.00 0.00 0.00 0.02 0.00 0.00 0.01 0.00 K jcn_only_AD larp,F_chr3R_24151542_24153876,I_chr3R_24160430_24160932,I_chr3R_24160430_24160971,RI_chr3R_24160430_24161527 chr3R - chr3R_24160430_24161729;chr3R_24160430_24160932;chr3R_24160430_24160971;chr3R_24160430_24160975;chr3R_24160430_24160979;chr3R_24160430_24161527 chr3R_24160430_24161939 chr3R_24160330_24160429;chr3R_24161940_24162125 3.17 2.63 5.37 1.67 3.81 3.96 4.19 2.11 2.15 6.74 2.30 2.50 1.61 4.00 6.06 3.70 4.17 2.33 4.29 3.49 2.78 2.94 2.87 4.35 1.15 0.95 2.55 2.72 9.18 0.84 5.59 2.17 4.78 2.94 2.65 1.68 3.52 4.72 2.99 4.91 1.23 3.42 0.00 1.47 6.06 0.91 3.33 4.68 1.36 3.85 3.55 5.15 4.04 0.00 4.55 3.17 1.23 3.36 K alternative_acceptor Gs2 chrX + chrX_11318137_11318297;chrX_11318137_11318302 chrX_11318137_11318314 chrX_11318068_11318136;chrX_11318315_11318487 0.00 0.00 0.00 0.00 NA 0.00 4.17 0.00 5.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 3.33 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA K intron_retention CG13601,I_chr3R_19753657_19753715 chr3R - chr3R_19753094_19753148 chr3R_19753093_19753094;chr3R_19753148_19753149 chr3R_19752925_19753093;chr3R_19753149_19753384 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD Taf12,RI_chr3R_7504595_7505288,I_chr3R_7504949_7505288 chr3R - chr3R_7504595_7505288 chr3R_7504595_7504665 chr3R_7504495_7504594;chr3R_7505289_7505388 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG12024,REI_chr3L_1857404_1857509 chr3L + chr3L_1857404_1857512;chr3L_1857404_1857509 chr3L_1857404_1857464 chr3L_1857304_1857403;chr3L_1857513_1857609 18.18 14.81 8.33 9.68 21.43 8.70 19.05 16.00 21.31 17.50 17.39 15.79 22.22 18.75 16.13 35.71 27.78 16.00 12.50 18.97 21.74 31.82 9.09 13.73 22.73 14.29 16.67 17.65 26.00 14.81 11.11 25.00 16.90 18.18 14.81 33.33 16.05 18.37 17.31 21.67 21.62 20.00 18.18 22.00 22.22 20.00 13.46 31.43 18.42 16.67 14.29 23.33 11.63 17.65 20.83 19.35 12.50 27.66 K intron_retention MB8.chr3R.pasa.66,CG1105,I_chr3R_2892020_2892122,RI_chr3R_2892020_2892252,I_chr3R_2892305_2892645 chr3R - chr3R_2892020_2892645 chr3R_2892019_2892020;chr3R_2892645_2892646 chr3R_2891920_2892019;chr3R_2892646_2892745 6.90 5.71 3.70 1.59 6.06 11.11 4.17 6.56 10.00 0.00 0.00 5.56 13.79 6.25 8.51 17.07 14.29 10.00 6.90 10.34 0.00 0.00 5.56 6.12 7.41 4.55 12.50 7.14 2.94 6.06 5.26 6.67 7.55 8.20 0.00 7.89 6.52 2.38 5.13 10.91 8.82 5.63 0.00 7.69 6.90 8.51 11.54 13.16 9.09 6.25 8.06 14.29 0.00 8.00 6.82 10.53 8.00 14.89 K intron_retention Asx chr2R + chr2R_10397969_10398509 chr2R_10397968_10397969;chr2R_10398509_10398510 chr2R_10397728_10397968;chr2R_10398510_10399220 3.03 2.99 0.00 6.38 4.65 5.00 4.65 3.77 2.27 7.69 10.00 2.22 6.67 6.25 5.00 0.00 4.88 0.00 3.57 4.10 6.67 0.00 2.80 0.00 0.00 9.09 3.66 4.69 6.38 5.26 9.09 0.00 3.77 1.75 3.77 4.84 2.67 1.37 2.19 1.14 0.00 3.49 9.09 0.00 0.00 2.27 0.00 0.00 2.44 3.51 3.75 0.00 0.00 0.00 0.00 3.03 3.92 0.00 K alternative_acceptor shep,RI_chr3L_5163541_5194164,I_chr3L_5177084_5177314,I_chr3L_5193467_5212049 chr3L - chr3L_5155732_5156066;chr3L_5155711_5156066 chr3L_5155644_5156066 chr3L_5156067_5156229;chr3L_5155556_5155643 0.00 0.00 0.00 0.00 0.88 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.46 0.00 0.00 0.00 1.37 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention Lag1,RI_chrX_6153758_6153930,I_chrX_6153758_6155077,RI_chrX_6153758_6161036,I_chrX_6160751_6160887,I_chrX_6160907_6161036 chrX - chrX_6153758_6154193 chrX_6153757_6153758;chrX_6154193_6154194 chrX_6153658_6153757;chrX_6154194_6154260 12.41 NA NA NA NA NA 14.29 NA 33.33 NA NA 5.26 NA NA NA NA NA NA NA 26.67 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor CG31068 chr3R + chr3R_23061584_23061636;chr3R_23061584_23061639 chr3R_23061584_23061627 chr3R_23061427_23061583;chr3R_23061640_23061706 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_donor CG16971,CG33229,I_chr3L_225856_225909,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_224184_224972;chr3L_224779_224972 chr3L_224886_224972 chr3L_224973_225140;chr3L_224174_224183 12.75 23.50 13.78 37.83 9.09 12.02 12.75 2.61 6.97 10.64 10.99 7.60 5.76 11.93 9.09 14.75 6.23 6.70 7.42 4.08 2.01 13.26 9.57 25.32 35.33 32.91 66.42 58.09 17.98 14.13 2.80 12.58 9.81 6.68 19.01 42.01 13.18 25.20 4.63 14.93 31.62 9.67 13.85 12.70 15.54 5.85 20.65 9.19 10.05 7.34 24.11 14.94 15.87 35.14 6.29 21.59 25.00 18.22 K alternative_donor CG30015,I_chr2R_6743814_6744285,HL05382 chr2R - chr2R_6750461_6762075 chr2R_6750461_6761358 chr2R_6750328_6750460;chr2R_6762076_6762097 73.03 86.67 69.44 67.80 75.00 75.86 75.00 58.82 73.03 56.00 80.77 93.06 53.57 74.36 68.18 62.90 74.29 56.00 73.81 76.92 81.48 72.50 77.78 75.00 70.00 81.25 87.18 94.12 66.67 64.29 67.57 63.64 56.25 62.50 56.00 79.55 74.29 80.00 70.97 83.10 62.86 70.97 78.12 86.54 62.07 48.15 50.00 55.43 76.19 64.00 75.56 82.14 73.33 58.82 65.45 78.95 78.57 63.64 K alternative_acceptor CG17233,I_chr3L_20232803_20232962,RI_chr3L_20232898_20232962 chr3L - chr3L_20232648_20232962;chr3L_20232714_20232962;chr3L_20232645_20232962 chr3L_20232711_20232962 chr3L_20232963_20233016;chr3L_20232147_20232644 36.36 50.00 33.33 15.38 40.00 30.77 40.91 41.38 28.00 16.67 38.89 22.86 54.55 46.67 38.10 36.36 35.71 26.67 42.86 12.20 41.67 42.31 21.62 26.92 14.29 61.54 30.43 31.25 26.67 28.00 33.33 23.08 28.00 46.67 40.00 32.00 22.86 64.29 26.67 37.04 15.38 36.84 38.46 36.36 43.75 31.82 28.57 34.78 41.46 4.76 42.86 47.37 13.04 52.38 50.00 47.37 42.86 37.50 K intron_retention tow chr3L + chr3L_6941016_6941085 chr3L_6941015_6941016;chr3L_6941085_6941086 chr3L_6940922_6941015;chr3L_6941086_6941098 11.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.76 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor mod(r),I_chrX_515823_515874,RI_chrX_515831_515923,I_chrX_516392_517480 chrX + chrX_515831_515874;chrX_515831_515923 chrX_515831_515885 chrX_515763_515830;chrX_515924_515974 30.00 26.67 38.46 31.58 30.77 42.86 22.22 28.57 27.59 50.00 15.38 33.33 41.67 40.00 28.57 31.82 22.22 16.67 25.00 33.33 14.29 36.36 38.89 47.37 40.00 35.71 40.00 28.57 36.36 33.33 22.73 42.86 28.57 23.81 27.27 30.00 23.53 26.67 25.00 29.17 42.86 28.00 30.00 29.41 18.18 44.44 35.29 25.00 47.83 17.65 36.84 27.27 35.29 27.27 35.29 33.33 26.67 14.29 K alternative_acceptor I_chr2R_7778750_7781059,I_chr2R_7778971_7781059,Ef1alpha48D,I_chr2R_7779690_7780997,I_chr2R_7779690_7781065,I_chr2R_7779690_7783075,I_chr2R_7779719_7781059,I_chr2R_7779813_7781059,I_chr2R_7779892_7781059,EF_chr2R_7779896_7781065,I_chr2R_7780542_7781059,I_chr2R_7780580_7781059,snoRNA:Me28S-A1322,I_chr2R_7780840_7781059,I_chr2R_7780877_7781059,RI_chr2R_7781135_7783075 chr2R + chr2R_7779690_7781065 chr2R_7779690_7781059 chr2R_7779622_7779689;chr2R_7781066_7781097 99.96 99.93 99.98 99.93 99.98 99.97 99.97 99.96 99.95 100.00 99.98 99.97 99.95 99.94 99.97 99.94 99.98 99.90 99.84 99.98 99.98 99.99 99.98 99.99 99.92 99.93 99.94 99.98 99.97 100.00 99.93 99.95 99.96 99.93 99.94 99.92 99.94 99.97 99.96 99.97 100.00 99.96 100.00 99.98 99.95 99.97 99.97 100.00 99.93 100.00 99.93 99.93 99.95 99.92 99.98 99.92 99.96 99.89 K intron_retention RpL9,I_chr2L_11003762_11003828 chr2L - chr2L_11003762_11004005 chr2L_11003761_11003762;chr2L_11004005_11004006 chr2L_11003662_11003761;chr2L_11004006_11004055 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.06 0.02 0.00 0.00 0.05 0.09 0.00 0.00 0.00 0.06 0.00 0.03 0.00 0.00 0.01 0.00 0.00 0.05 0.06 0.00 0.00 0.00 0.00 0.03 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 K intron_retention SCAP,CG14591 chr2R - chr2R_1914354_1914419 chr2R_1914353_1914354;chr2R_1914419_1914420 chr2R_1913832_1914353;chr2R_1914420_1914774 2.84 2.15 2.90 1.92 4.62 0.00 3.85 2.30 3.64 0.00 0.00 2.21 0.00 4.41 2.50 4.21 0.00 1.49 3.95 3.08 0.00 15.00 8.09 2.92 8.89 14.55 3.49 6.52 4.81 0.00 6.45 0.00 5.88 3.31 4.11 2.56 3.33 1.83 2.84 5.11 12.07 2.53 0.00 1.53 2.56 3.12 0.00 0.00 0.66 4.09 2.17 2.60 3.39 2.68 2.78 1.77 2.94 3.85 K intron_retention CG32177,Krn chr3L - chr3L_17643727_17647091 chr3L_17643726_17643727;chr3L_17647091_17647092 chr3L_17642664_17643726;chr3L_17647092_17647376 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 10.53 14.29 NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor PhKgamma,I_chrX_11589428_11589856,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11589297_11589856;chrX_11589428_11589856;chrX_11589313_11589856 chrX_11589418_11589856 chrX_11589857_11589956;chrX_11589195_11589296 16.67 20.00 12.50 15.38 NA 0.00 14.29 33.33 16.67 20.00 NA 30.77 NA 28.57 10.00 0.00 NA 16.67 0.00 0.00 NA 21.43 23.08 10.00 12.50 14.29 12.50 12.50 11.11 37.50 15.38 NA 33.33 25.00 0.00 42.86 36.36 20.00 26.67 20.00 NA 14.29 NA 23.53 27.27 25.00 NA 18.75 17.65 15.38 20.00 25.00 0.00 0.00 16.67 0.00 18.18 9.09 K jcn_only_AD CG7843,I_chr2R_1972736_1972822 chr2R - chr2R_1971513_1972012 chr2R_1971513_1971673 chr2R_1971446_1971512;chr2R_1972013_1972292 13.12 9.09 13.89 20.37 11.48 12.31 18.40 11.11 13.12 10.00 12.96 8.80 13.41 13.43 12.79 12.50 16.67 6.67 11.63 15.04 7.14 5.95 10.47 7.79 23.08 5.93 20.99 22.81 24.53 17.31 55.15 19.44 12.50 11.90 17.33 20.83 13.85 9.68 9.09 16.51 18.75 11.80 23.81 19.05 23.08 15.71 12.28 20.88 17.48 6.94 10.98 8.89 16.67 11.63 17.82 16.13 3.45 12.50 K alternative_acceptor Pur-alpha,I_chr4_581447_585166 chr4 + chr4_585289_586035 chr4_585289_586032 chr4_585180_585288;chr4_586036_586083 21.43 NA NA NA NA NA NA 30.77 21.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA K alternative_donor CG5594,CG2812 chr2R + chr2R_19797333_19799199 chr2R_19797357_19799199 chr2R_19799200_19799391;chr2R_19797201_19797332 92.92 93.33 92.59 92.31 96.08 92.45 95.24 92.05 93.18 72.73 86.05 92.24 92.98 93.22 98.44 95.29 96.49 94.37 90.91 93.96 91.23 91.67 90.72 92.00 97.83 91.67 91.89 100.00 93.75 89.61 92.19 97.50 83.64 95.35 91.49 89.74 99.07 91.03 93.55 83.33 100.00 96.30 89.80 93.22 85.42 89.66 92.31 95.40 96.04 97.78 92.92 98.25 92.31 97.44 98.04 90.91 97.96 86.44 K intron_retention mmd chrX - chrX_15856485_15856568 chrX_15856484_15856485;chrX_15856568_15856569 chrX_15856307_15856484;chrX_15856569_15856688 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA 4.76 0.00 NA 0.00 0.00 NA NA NA 3.70 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 11.76 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention Fur1,noncoding_19149,I_chr3R_21174062_21174771,I_chr3R_21179590_21179870,CEI_chr3R_21210600_21222433,I_chr3R_21257704_21287086 chr3R - chr3R_21174062_21177838 chr3R_21174061_21174062;chr3R_21177838_21177839 chr3R_21173962_21174061;chr3R_21177839_21177914 6.78 8.11 6.78 16.47 7.41 8.47 11.11 7.37 10.56 10.91 9.09 6.72 8.70 7.55 12.00 14.00 5.41 3.39 9.21 6.21 8.82 3.20 14.49 6.06 7.84 6.52 5.88 10.26 0.93 5.88 6.25 2.63 9.17 6.52 3.70 8.93 6.90 8.06 6.38 11.88 5.13 8.33 6.52 5.21 2.46 4.46 4.26 15.46 10.11 5.19 3.54 13.21 3.41 2.41 8.33 5.00 0.86 3.74 K cassette sba chr3R - chr3R_19746569_19748617 chr3R_19746569_19747239;chr3R_19747432_19748617 chr3R_19747240_19747431 chr3R_19745729_19746568;chr3R_19748618_19748681 88.89 71.43 100.00 90.48 85.71 87.50 84.21 95.00 85.19 NA 100.00 92.86 92.31 100.00 88.89 93.75 88.89 87.50 93.75 92.31 85.71 83.33 90.00 77.78 80.00 100.00 100.00 77.78 62.50 83.33 91.67 NA 80.00 88.89 100.00 90.91 87.50 NA 88.89 92.31 NA 77.27 88.89 88.89 NA 80.00 75.00 66.67 94.74 85.71 100.00 75.00 NA NA 88.89 83.33 NA 80.00 N jcn_only_AD noncoding_4622,CE_chr2R_2237053_2237111 chr2R - chr2R_2237036_2237093;chr2R_2237036_2237086 chr2R_2237036_2237090 chr2R_2236997_2237035;chr2R_2237094_2237159 75.13 100.00 68.49 NA 66.67 100.00 78.06 76.25 73.99 69.44 100.00 68.27 73.53 63.41 100.00 100.00 74.00 64.44 80.00 69.77 70.69 70.80 100.00 78.26 NA 100.00 NA 78.57 76.36 83.65 70.69 76.19 76.13 75.56 66.04 72.16 71.11 62.16 61.90 76.92 71.74 74.26 73.85 63.89 60.61 66.00 100.00 74.71 83.33 100.00 77.78 100.00 82.61 100.00 78.33 100.00 73.58 68.63 K intron_retention Sdc,I_chr2R_17282542_17285569,RI_chr2R_17286086_17286391,I_chr2R_17286089_17286391,I_chr2R_17286819_17367595,I_chr2R_17324594_17367595 chr2R - chr2R_17282551_17286679 chr2R_17282550_17282551;chr2R_17286679_17286680 chr2R_17282383_17282550;chr2R_17286680_17286818 16.67 27.78 7.41 52.94 0.00 7.14 12.50 20.00 17.78 9.09 44.44 12.24 13.16 25.00 22.22 25.00 14.29 10.53 9.52 13.64 42.11 22.22 18.18 4.76 25.00 12.00 17.86 6.67 39.13 20.00 13.33 NA 34.15 15.62 41.67 35.48 16.67 22.22 7.50 12.99 17.65 11.90 NA 40.00 4.35 25.00 9.09 26.92 26.67 16.67 12.50 7.14 NA 21.43 16.67 12.50 NA 15.38 K intron_retention CG8031 chr3R - chr3R_8834869_8834925 chr3R_8834868_8834869;chr3R_8834925_8834926 chr3R_8834219_8834868;chr3R_8834926_8835037 20.00 17.14 11.11 50.88 22.22 30.56 27.27 11.11 18.37 35.29 27.59 23.81 20.00 21.43 21.28 16.05 15.56 12.50 14.29 11.82 22.58 16.09 30.23 20.37 31.25 38.10 26.79 34.62 48.15 4.44 36.99 15.15 10.26 13.98 30.00 26.47 23.68 14.29 14.29 23.21 48.48 11.01 23.91 17.50 12.90 14.06 15.62 19.44 16.67 20.00 18.64 28.12 21.21 16.67 19.05 19.30 29.79 20.37 K alternative_donor CG41099,I_chr3RHet_1688505_1705884,RI_chr3RHet_1703294_1705884 chr3RHet - chr3RHet_1703298_1705901 chr3RHet_1703298_1705884 chr3RHet_1702561_1703297;chr3RHet_1705902_1705984 77.52 NA 100.00 93.75 NA NA 76.47 66.67 100.00 NA NA 76.47 100.00 87.50 NA 78.57 NA NA 87.50 78.57 NA NA 88.89 NA NA NA NA NA 85.71 NA 60.00 NA NA 70.59 NA 69.23 NA NA NA 90.91 NA 66.67 NA 84.62 NA 70.00 NA 60.00 71.43 NA NA NA NA NA 41.67 NA NA 66.67 K alternative_acceptor Dbp80 chr3LHet + chr3LHet_2543829_2543938;chr3LHet_2543829_2543917 chr3LHet_2543829_2543887 chr3LHet_2543765_2543828;chr3LHet_2543939_2543944 90.00 91.67 85.71 89.47 100.00 90.00 100.00 90.00 100.00 NA NA 89.47 83.33 100.00 83.33 100.00 92.31 75.00 100.00 88.24 80.00 100.00 83.33 83.33 NA NA 100.00 NA 80.00 100.00 80.00 NA NA 94.12 NA NA NA 85.71 100.00 85.71 NA 94.44 100.00 94.44 NA 100.00 87.50 75.00 90.48 77.78 86.67 100.00 71.43 100.00 86.67 84.62 100.00 83.33 K intron_retention tai,I_chr2L_9191814_9206231 chr2L + chr2L_9243901_9245385 chr2L_9243900_9243901;chr2L_9245385_9245386 chr2L_9243648_9243900;chr2L_9245386_9245712 2.02 0.00 5.56 9.38 0.00 0.00 2.27 3.51 2.44 1.85 5.88 2.78 0.00 6.90 0.00 7.69 NA 5.00 0.00 1.84 0.00 2.06 4.21 4.05 1.32 0.00 1.28 0.79 2.37 0.00 2.94 5.41 3.12 3.08 0.00 1.82 0.81 2.60 3.51 1.98 6.00 3.51 0.00 2.82 0.00 0.00 0.00 0.00 2.38 0.00 2.33 0.00 0.00 0.00 4.88 2.13 3.85 0.00 K alternative_acceptor msps,I_chr3R_11877071_11877796 chr3R + chr3R_11883488_11883568 chr3R_11883488_11883565 chr3R_11883274_11883487;chr3R_11883569_11883687 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.00 100.00 98.11 100.00 97.67 100.00 100.00 100.00 98.90 98.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 98.80 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 100.00 K cassette CG3353,RI_chr3R_17043671_17044394 chr3R - chr3R_17043671_17044394 chr3R_17043671_17043725;chr3R_17044341_17044394 chr3R_17043726_17044340 chr3R_17043571_17043670;chr3R_17044395_17044494 99.16 98.57 98.63 98.25 100.00 98.25 100.00 98.82 99.22 100.00 100.00 99.12 97.92 100.00 100.00 100.00 100.00 98.39 98.15 99.32 100.00 98.99 97.65 98.88 96.23 95.56 98.92 97.58 98.36 98.53 100.00 98.55 100.00 100.00 98.33 100.00 99.16 98.77 100.00 100.00 100.00 100.00 100.00 98.53 100.00 100.00 100.00 98.75 99.14 100.00 98.92 98.04 99.27 100.00 98.59 98.81 99.44 99.49 K intron_retention CG1902,CG30000,I_chr2R_5495525_5495581 chr2R + chr2R_5491031_5491373 chr2R_5491030_5491031;chr2R_5491373_5491374 chr2R_5491026_5491030;chr2R_5491374_5491685 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 97.56 100.00 95.00 100.00 100.00 100.00 100.00 100.00 95.83 97.83 95.83 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Arp14D,RE_chrX_16445264_16446372 chrX - chrX_16443182_16443251 chrX_16443181_16443182;chrX_16443251_16443252 chrX_16442302_16443181;chrX_16443252_16443445 96.27 97.92 98.36 95.31 97.78 96.43 98.02 94.21 96.27 93.33 88.89 95.00 94.55 97.37 97.22 98.43 95.00 98.51 97.44 95.88 83.02 97.56 97.30 93.02 100.00 98.39 91.89 94.12 96.43 94.12 93.83 98.11 98.08 96.80 96.67 96.67 94.29 90.91 95.83 95.83 92.13 98.51 98.28 100.00 92.54 98.00 86.84 99.12 97.04 92.50 87.50 92.86 92.31 91.30 96.51 92.68 94.00 96.69 K jcn_only_AD F_chr3L_6602496_6609177,CG8398 chr3L + chr3L_6606753_6608997 chr3L_6606922_6608997 chr3L_6608998_6609696;chr3L_6606636_6606752 56.67 58.82 59.04 71.43 51.28 46.15 70.54 53.72 61.99 NA 59.42 44.86 58.97 50.68 58.44 51.56 61.64 57.69 68.89 48.37 52.54 39.09 63.27 57.14 NA 61.22 56.41 37.21 57.14 52.17 56.19 76.92 68.00 59.63 63.64 63.64 49.09 51.61 47.06 54.93 82.76 54.93 54.55 61.54 NA 50.00 NA 63.64 53.85 47.83 47.37 56.67 NA NA 54.55 35.48 58.70 74.07 K alternative_acceptor par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,I_chr2R_15350149_15350210,FI_chr2R_15350149_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350149_15351846;chr2R_15350149_15351814 chr2R_15350149_15350210 chr2R_15350068_15350148;chr2R_15351847_15351914 28.57 33.33 33.33 16.67 33.33 33.33 37.50 33.33 36.36 33.33 NA 25.00 16.67 25.00 20.00 27.27 42.86 20.00 16.67 33.33 20.00 50.00 25.00 16.67 20.00 18.18 NA 50.00 40.00 50.00 33.33 NA 33.33 23.08 25.00 50.00 NA NA 0.00 42.86 0.00 27.27 28.57 20.00 NA 0.00 0.00 20.00 38.46 NA 40.00 28.57 NA NA 33.33 NA 25.00 33.33 N jcn_only_AD kat80,I_chrX_16162233_16162306,I_chrX_16168725_16169287 chrX - chrX_16168725_16169565;chrX_16168725_16169287 chrX_16168725_16169347 chrX_16168625_16168724;chrX_16169566_16169786 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 13.33 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA N jcn_only_AD CG15211,EF_chrX_10666660_10666923 chrX + chrX_10666660_10671993 chrX_10667200_10671993 chrX_10671994_10672161;chrX_10666577_10666659 52.01 NA NA 51.85 40.00 57.14 100.00 100.00 64.10 5.26 NA 100.00 NA NA NA NA NA 48.48 NA 34.29 NA NA 60.00 52.17 32.00 100.00 33.33 25.00 17.24 NA 63.64 NA NA NA NA NA 26.09 45.45 54.17 100.00 NA 75.00 NA 51.85 53.33 NA NA NA NA NA NA NA NA NA 100.00 40.91 38.71 NA K alternative_last_exon d4 chr2R + chr2R_1151501_1182301 chr2R_1151501_1181723 chr2R_1182302_1183475 chr2R_1181724_1182217 chr2R_1151482_1151500 97.58 98.41 98.73 98.31 98.08 98.25 98.20 96.33 97.84 91.30 96.49 97.94 96.61 98.41 98.55 99.15 98.04 96.67 98.82 99.24 98.08 98.48 95.24 95.06 97.92 98.57 98.82 97.73 98.11 96.55 97.37 93.88 96.10 93.64 96.67 98.25 95.16 98.04 97.06 99.15 96.43 96.58 96.77 98.67 92.59 94.81 94.44 97.30 97.58 94.37 96.10 98.28 94.23 95.45 98.65 94.92 92.21 99.18 K intron_retention Rcd1 chr2R - chr2R_10039432_10040350 chr2R_10039431_10039432;chr2R_10040350_10040351 chr2R_10039112_10039431;chr2R_10040351_10040624 5.56 14.29 0.00 9.68 NA 12.50 0.00 3.23 9.09 0.00 4.55 17.39 0.00 20.00 0.00 11.11 5.88 0.00 21.05 7.50 6.67 6.67 5.71 5.00 6.90 0.00 3.57 4.88 5.00 9.09 6.25 10.00 6.06 10.00 5.26 0.00 10.81 3.85 4.44 1.72 16.00 10.26 NA 15.15 0.00 0.00 0.00 9.52 10.34 3.45 9.09 0.00 0.00 0.00 20.00 4.35 0.00 5.56 K intron_retention stai,I_chr2L_6110225_6121773 chr2L + chr2L_6122411_6122977 chr2L_6122410_6122411;chr2L_6122977_6122978 chr2L_6122264_6122410;chr2L_6122978_6123837 1.31 NA NA 20.00 NA NA 3.23 0.00 NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA 2.63 NA NA NA NA 0.00 NA NA NA 0.00 NA NA 11.76 NA NA NA NA NA NA NA NA NA NA K intron_retention aub chr2L - chr2L_11000107_11000164 chr2L_11000106_11000107;chr2L_11000164_11000165 chr2L_10999914_11000106;chr2L_11000165_11000658 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette lqf,I_chr3L_7522287_7522807 chr3L + chr3L_7528745_7530075 chr3L_7528745_7529109;chr3L_7529536_7530075 chr3L_7529110_7529535 chr3L_7528643_7528744;chr3L_7530076_7530479 6.25 5.97 6.25 5.26 2.17 1.85 9.41 6.74 6.99 9.68 10.00 13.16 4.44 5.77 6.35 10.14 15.69 6.00 3.57 14.88 12.50 2.44 6.06 4.88 7.14 5.26 4.60 4.17 8.11 5.71 11.86 4.55 6.25 9.30 9.30 15.25 6.90 4.17 3.53 5.37 3.70 6.15 6.38 7.14 4.84 8.45 6.02 7.94 6.90 2.74 5.75 3.64 13.16 7.14 5.95 6.78 6.10 11.11 K jcn_only_AD Mnf,RI_chr3L_11108913_11109028 chr3L - chr3L_11111166_11112264;chr3L_11111166_11113381 chr3L_11111166_11113709 chr3L_11110405_11111165;chr3L_11113710_11113829 100.00 95.00 97.67 100.00 100.00 100.00 100.00 96.00 98.21 NA 96.67 100.00 97.56 97.14 100.00 97.47 96.43 92.31 97.73 100.00 100.00 100.00 94.29 97.06 97.06 100.00 100.00 NA NA NA 100.00 100.00 NA 98.57 100.00 100.00 95.24 100.00 100.00 100.00 NA 95.24 95.83 NA 100.00 96.15 100.00 96.88 98.77 97.22 100.00 NA 100.00 95.45 100.00 100.00 100.00 97.22 K alternative_donor eIF-3p66,CG16710,CG18754 chr3R + chr3R_19506112_19506233 chr3R_19506173_19506233 chr3R_19506234_19506869;chr3R_19505783_19506111 0.00 0.45 0.00 0.00 0.00 0.00 0.76 0.00 0.73 0.00 0.00 0.26 0.00 0.00 0.90 0.00 0.61 0.58 0.00 0.21 1.12 0.95 0.33 0.44 0.62 0.00 0.34 0.00 0.50 0.00 0.42 0.88 0.00 0.00 0.65 0.54 0.27 0.00 0.32 0.35 0.00 0.54 0.00 0.00 0.00 0.53 0.00 0.00 0.00 1.13 0.72 0.00 0.00 0.56 0.00 0.00 0.00 0.62 K alternative_donor Npc1a chr2L - chr2L_10217181_10217352 chr2L_10217181_10217340 chr2L_10216861_10217180;chr2L_10217353_10217533 26.83 18.92 25.64 31.25 20.69 25.81 16.67 28.07 26.19 12.00 20.00 25.00 23.81 29.17 21.95 35.42 25.81 33.33 22.00 27.59 26.32 19.67 28.57 28.57 33.33 28.57 33.33 NA 21.95 16.67 23.40 27.27 31.25 37.25 45.45 36.36 25.00 33.33 38.71 27.78 22.22 26.56 22.73 32.65 20.00 23.81 27.78 28.26 31.03 33.33 26.83 24.32 40.00 NA 33.33 26.09 19.23 30.00 K multi_cassette CG14995,I_chr3L_4095875_4097205,I_chr3L_4096047_4096903 chr3L - chr3L_4095875_4097205 chr3L_4095875_4095971;chr3L_4096068_4096903;chr3L_4096979_4097205 chr3L_4095972_4096067;chr3L_4096904_4096978 chr3L_4095775_4095874;chr3L_4097206_4097305 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3295244 chr2R_3294565_3294566;chr2R_3295244_3295245 chr2R_3294491_3294565;chr2R_3295245_3295302 45.23 50.00 47.06 62.16 NA 41.67 33.33 50.00 36.36 NA 25.00 41.38 60.00 46.67 40.00 58.62 50.00 58.33 42.86 36.59 43.75 92.31 45.00 45.00 41.18 56.25 50.00 40.00 56.25 47.06 42.86 35.29 40.74 30.00 72.73 68.42 33.33 50.00 50.00 45.45 73.33 48.15 50.00 50.00 38.46 40.00 NA 58.33 35.29 30.77 50.00 30.77 41.18 NA 36.84 46.15 NA 33.33 K jcn_only_AA Rlip,RI_chr3R_16843597_16843851,I_chr3R_16845111_16845166 chr3R + chr3R_16843797_16843854 chr3R_16843797_16843851 chr3R_16843664_16843796;chr3R_16843855_16843951 100.00 NA NA NA NA NA NA 95.24 100.00 NA NA 91.30 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 95.65 100.00 88.46 NA NA NA NA NA NA 91.30 100.00 100.00 NA NA NA 100.00 100.00 100.00 96.30 NA NA NA NA NA NA NA NA 92.31 K alternative_acceptor MRG15,I_chr3R_11103293_11103335,l(3)neo43,F_chr3R_11104164_11104239 chr3R - chr3R_11103278_11103335 chr3R_11103293_11103335 chr3R_11103336_11103435;chr3R_11103193_11103277 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 1.85 0.00 0.00 0.00 3.57 0.00 1.64 2.13 1.41 1.72 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 K intron_retention Cyp311a1 chrX - chrX_11924795_11924871 chrX_11924794_11924795;chrX_11924871_11924872 chrX_11924445_11924794;chrX_11924872_11925228 13.81 NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA 13.33 NA NA NA 0.00 33.33 NA NA NA NA NA NA NA 25.00 10.53 K cassette lark,noncoding_11093,REI_chr3L_7332718_7333975,RI_chr3L_7334219_7334452 chr3L + chr3L_7332718_7334452 chr3L_7332718_7333975;chr3L_7334215_7334452 chr3L_7333976_7334214 chr3L_7332618_7332717;chr3L_7334453_7334552 100.00 100.00 100.00 100.00 100.00 98.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K multi_cassette ssp4,RI_chr2R_13409412_13411004,I_chr2R_13409412_13411328,I_chr2R_13409412_13411588,I_chr2R_13414489_13414718,I_chr2R_13414818_13414880,I_chr2R_13418952_13419022 chr2R - chr2R_13410466_13411588 chr2R_13410466_13411004;chr2R_13411077_13411328;chr2R_13411404_13411588 chr2R_13411005_13411076;chr2R_13411329_13411403 chr2R_13410454_13410465;chr2R_13411589_13411688 75.00 NA NA 100.00 NA NA NA 75.00 NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 K intron_retention CG6854,E_chr3L_15091621_15103920,RI_chr3L_15102059_15102345 chr3L + chr3L_15102588_15102643 chr3L_15102587_15102588;chr3L_15102643_15102644 chr3L_15102506_15102587;chr3L_15102644_15103437 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 NA 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 4.76 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 2.44 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Sec16,I_chrX_12501913_12502010,I_chrX_12502899_12502973 chrX + chrX_12502899_12502970;chrX_12502899_12502967 chrX_12502899_12502973 chrX_12502799_12502898;chrX_12502974_12503073 1.92 5.88 4.00 3.33 0.00 0.00 0.00 3.12 0.00 4.76 0.00 0.00 5.56 0.00 4.76 3.45 0.00 0.00 0.00 8.11 0.00 4.35 0.00 0.00 0.00 4.55 0.00 0.00 5.00 3.85 3.45 3.57 2.38 2.86 0.00 5.56 0.00 0.00 0.00 1.92 2.70 7.14 0.00 3.45 3.33 2.08 0.00 4.48 2.56 0.00 0.00 0.00 11.11 0.00 3.45 4.55 0.00 0.00 K alternative_donor CG7702 chr3R + chr3R_14495421_14496859;chr3R_14495285_14496859 chr3R_14495273_14496859 chr3R_14496860_14497096;chr3R_14495114_14495272 0.00 NA 0.00 NA NA NA 0.00 NA NA NA NA 25.00 NA NA NA NA NA NA NA 9.09 NA NA 11.11 0.00 20.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA 0.00 NA 0.00 NA 5.56 0.00 NA 11.11 NA NA NA NA NA NA NA K intron_retention Su(P) chr3L - chr3L_16604399_16604462 chr3L_16604398_16604399;chr3L_16604462_16604463 chr3L_16603992_16604398;chr3L_16604463_16605296 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG3499,I_chr2R_18772777_18772819 chr2R - chr2R_18772188_18772242 chr2R_18772187_18772188;chr2R_18772242_18772243 chr2R_18771871_18772187;chr2R_18772243_18772316 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 5.56 0.00 NA NA 0.00 0.00 NA 0.00 0.00 3.85 6.25 0.00 0.00 8.70 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 5.56 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 5.56 0.00 0.00 0.00 5.88 NA K alternative_acceptor Nipped-B,I_chr2R_579746_579800,I_chr2R_580989_582555,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_579746_579800 chr2R_579752_579800 chr2R_579801_579900;chr2R_579646_579745 98.85 100.00 100.00 97.67 100.00 95.83 98.85 100.00 98.48 91.67 96.88 100.00 96.55 100.00 96.00 98.41 96.30 100.00 97.50 100.00 100.00 100.00 100.00 100.00 95.24 95.45 97.56 100.00 100.00 100.00 96.23 96.97 100.00 96.92 100.00 95.24 100.00 100.00 95.00 97.44 96.30 97.83 96.55 100.00 100.00 97.44 100.00 95.65 98.41 97.06 97.50 100.00 100.00 100.00 100.00 93.75 100.00 100.00 K cassette SPoCk,I_chr3L_22776339_22776519,I_chr3L_22777865_22778359 chr3L + chr3L_22766817_22770210 chr3L_22766817_22768074;chr3L_22768238_22770210 chr3L_22768075_22768237 chr3L_22766783_22766816;chr3L_22770211_22771924 40.00 46.43 46.88 31.48 32.26 37.50 46.15 29.63 43.06 42.86 40.00 65.62 31.03 43.33 40.54 40.54 48.15 26.09 38.71 84.48 50.00 45.45 30.91 35.56 24.14 51.72 38.89 29.63 61.54 32.35 41.94 58.33 38.71 43.14 38.46 74.07 39.22 32.35 39.13 52.17 52.63 34.85 37.04 29.79 43.48 46.88 31.58 52.17 43.64 26.92 41.94 33.33 37.50 25.00 33.33 42.86 31.58 45.45 K intron_retention CG3800 chr2R - chr2R_18823094_18823199 chr2R_18823093_18823094;chr2R_18823199_18823200 chr2R_18822582_18823093;chr2R_18823200_18824258 100.00 100.00 100.00 100.00 100.00 100.00 99.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.76 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2388671_2395659 chrX_2388671_2389073;chrX_2389272_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2395659 chrX_2389074_2389271;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664 chrX_2388641_2388670;chrX_2395660_2395759 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor px,RI_chr2R_18448648_18449403,RI_chr2R_18448648_18449438,R_chr2R_18448676_18449403 chr2R - chr2R_18448648_18449423 chr2R_18448648_18449403 chr2R_18448579_18448647;chr2R_18449424_18449503 81.82 NA NA NA NA NA 75.00 87.50 77.78 NA NA 85.71 NA NA NA 53.85 NA NA NA 66.67 NA 100.00 66.67 81.82 NA NA NA NA NA NA 85.71 NA NA 88.89 NA 81.82 100.00 NA 75.00 NA NA NA NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA K jcn_only_AA 14-3-3epsilon,I_chr3R_14068632_14073155,RI_chr3R_14074062_14074138,I_chr3R_14074016_14074138 chr3R + chr3R_14073874_14073936;chr3R_14073874_14073939;chr3R_14073874_14073942 chr3R_14073874_14073954 chr3R_14073693_14073873;chr3R_14073955_14074015 24.30 23.96 24.18 26.49 26.32 24.11 24.18 23.74 28.05 21.24 25.43 24.26 26.58 26.21 26.24 25.70 28.50 24.43 27.17 21.76 27.88 21.14 23.76 25.66 17.13 19.40 38.30 29.73 21.17 23.11 26.19 23.88 21.71 24.30 21.60 12.33 26.58 25.23 24.55 20.28 21.28 25.49 26.38 25.34 26.47 21.75 22.67 21.99 25.94 27.17 27.30 23.63 21.89 21.34 26.37 23.27 27.24 23.53 K jcn_only_AA bip2,RI_chr4_481674_487126,RI_chr4_483128_487126,RI_chr4_486609_487126 chr4 - chr4_486609_487126;chr4_485942_487126 chr4_485855_487126 chr4_487127_487226;chr4_485750_485854 4.76 8.33 5.26 4.76 13.04 NA 5.63 3.33 7.32 NA 3.70 2.63 0.00 6.25 8.11 5.17 7.41 5.26 6.45 8.22 6.25 NA 2.86 0.00 NA 5.00 3.70 NA NA NA 2.27 NA NA 6.35 NA NA 0.00 3.33 0.00 2.38 NA 1.59 0.00 0.00 NA 4.35 8.70 NA 9.23 NA 3.03 6.90 NA NA 4.44 NA NA NA K jcn_only_AA Tsp42Ef,I_chr2R_2912947_2914327 chr2R + chr2R_2912947_2914488 chr2R_2912947_2914327 chr2R_2912847_2912946;chr2R_2914489_2914662 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.91 0.00 0.24 0.00 0.41 0.32 0.00 0.58 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.92 0.00 0.00 0.65 0.38 0.00 0.39 0.50 0.35 0.00 0.00 0.00 1.15 0.00 0.00 0.00 K jcn_only_AA CG14133 chr3L - chr3L_11683209_11683325;chr3L_11683239_11683325 chr3L_11683229_11683325 chr3L_11683326_11683412;chr3L_11682731_11683208 18.18 NA NA NA NA NA NA NA 14.81 NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 18.18 NA 20.00 NA NA NA NA NA NA NA NA 18.18 NA NA NA 4.00 3.70 K intron_retention CG5261,I_chr2L_7428611_7428877 chr2L + chr2L_7428611_7428925 chr2L_7428610_7428611;chr2L_7428925_7428926 chr2L_7428511_7428610;chr2L_7428926_7428977 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.97 97.06 100.00 100.00 100.00 100.00 100.00 99.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 98.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 98.99 100.00 100.00 98.21 98.89 100.00 100.00 100.00 100.00 98.55 100.00 100.00 K intron_retention E_chr3R_20923460_20923586,CG33096,CG33095 chr3R + chr3R_20923441_20923556 chr3R_20923440_20923441;chr3R_20923556_20923557 chr3R_20923364_20923440;chr3R_20923557_20924191 72.73 70.00 70.00 83.33 50.00 72.73 82.35 56.41 68.42 75.00 55.56 62.16 62.50 64.71 70.37 52.38 52.63 72.73 70.00 66.67 70.59 90.91 82.76 73.08 81.82 61.54 85.19 93.33 86.67 93.33 62.96 NA 86.67 62.96 93.33 95.24 80.00 83.33 80.00 79.41 87.50 56.76 63.16 66.67 78.57 52.94 78.57 78.95 64.58 75.00 95.65 61.11 66.67 90.91 61.29 NA 84.62 78.57 K intron_retention msn,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2564696_2565600 chr3L_2564695_2564696;chr3L_2565600_2565601 chr3L_2564397_2564695;chr3L_2565601_2565613 64.71 52.17 65.00 79.41 73.33 52.00 85.29 78.38 71.19 50.00 73.68 96.43 65.00 76.92 65.00 91.67 53.33 81.25 61.54 65.00 73.68 19.13 44.66 44.87 49.06 73.33 42.55 33.33 64.71 68.00 69.57 68.42 56.25 69.57 46.88 75.00 50.00 58.33 51.90 48.44 60.00 69.86 66.67 55.10 70.00 52.00 27.59 65.79 70.21 36.84 39.19 57.14 59.09 24.14 65.00 48.15 45.00 77.27 K alternative_donor l(3)82Fd,I_chr3R_1121686_1121886,I_chr3R_1147660_1148709 chr3R - chr3R_1121686_1121886 chr3R_1121686_1121868 chr3R_1121586_1121685;chr3R_1121887_1121986 96.30 95.65 88.46 91.18 100.00 95.65 96.88 95.56 98.33 100.00 96.00 96.36 100.00 95.45 97.22 96.97 96.55 90.00 96.15 96.30 95.65 100.00 96.30 96.30 100.00 96.97 95.65 100.00 94.12 100.00 100.00 100.00 92.86 97.50 100.00 94.12 96.88 96.00 96.77 91.43 100.00 98.33 96.15 90.48 92.31 93.75 100.00 95.00 92.59 95.00 96.67 100.00 100.00 90.91 91.84 100.00 93.75 100.00 K intron_retention mst chrX + chrX_21260120_21260174 chrX_21260119_21260120;chrX_21260174_21260175 chrX_21259922_21260119;chrX_21260175_21260904 0.00 2.70 0.00 0.00 0.00 0.00 1.89 0.00 1.23 0.00 2.38 1.37 0.00 0.00 0.00 1.92 0.00 0.00 0.00 1.37 0.00 3.85 0.00 0.00 5.00 6.06 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.67 0.00 0.00 0.00 8.89 0.00 6.45 2.90 0.00 0.00 5.56 4.17 2.70 2.27 5.56 0.00 5.71 K intron_retention I_chr2L_11009331_11009442,dUTPase,I_chr2L_11011380_11011453 chr2L + chr2L_11011419_11011482 chr2L_11011418_11011419;chr2L_11011482_11011483 chr2L_11011335_11011418;chr2L_11011483_11011553 100.00 99.40 100.00 99.55 99.25 100.00 100.00 100.00 99.42 100.00 99.17 98.46 100.00 100.00 99.39 100.00 99.08 98.40 99.36 99.08 100.00 100.00 100.00 99.36 100.00 100.00 99.52 100.00 99.16 100.00 99.21 98.90 98.33 98.94 100.00 100.00 99.52 99.36 99.51 100.00 100.00 99.66 99.17 100.00 100.00 100.00 99.38 100.00 100.00 99.53 99.47 99.12 100.00 100.00 99.40 100.00 100.00 100.00 K alternative_last_exon Fhos,CE_chr3L_8759730_8775647,I_chr3L_8779538_8779726 chr3L + chr3L_8782618_8783269 chr3L_8782618_8782673 chr3L_8783270_8783608 chr3L_8782674_8782742 chr3L_8782571_8782617 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11178,CG11177 chrX + chrX_13502366_13502433 chrX_13502365_13502366;chrX_13502433_13502434 chrX_13502185_13502365;chrX_13502434_13503648 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 5.13 NA 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1667,RI_chr2R_5731409_5731653,I_chr2R_5732410_5732504 chr2R + chr2R_5732071_5732126 chr2R_5732070_5732071;chr2R_5732126_5732127 chr2R_5731966_5732070;chr2R_5732127_5732409 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Adar,RI_chrX_1668256_1669638,RI_chrX_1668256_1669682,I_chrX_1668256_1682696,I_chrX_1674594_1674717 chrX + chrX_1668229_1672644 chrX_1668228_1668229;chrX_1672644_1672645 chrX_1668156_1668228;chrX_1672645_1672732 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 93.75 NA 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 K alternative_donor wal,I_chr2R_7577394_7578043,I_chr2R_7578254_7578317 chr2R - chr2R_7577394_7578043 chr2R_7577394_7577950 chr2R_7577294_7577393;chr2R_7578044_7578091 99.56 100.00 99.57 98.44 100.00 99.48 100.00 100.00 99.71 100.00 99.25 99.71 100.00 98.70 100.00 99.14 100.00 100.00 99.46 99.75 100.00 98.21 99.56 99.55 100.00 100.00 99.52 100.00 99.19 99.13 99.41 99.19 99.15 99.25 99.17 99.25 100.00 99.42 99.62 99.56 98.67 99.70 99.33 100.00 100.00 99.44 100.00 99.16 99.38 100.00 100.00 99.19 99.31 99.43 99.55 100.00 99.56 100.00 N intron_retention Mgat2,I_chr3R_25842597_25842859,I_chr3R_25845406_25846373 chr3R - chr3R_25842571_25843987 chr3R_25842570_25842571;chr3R_25843987_25843988 chr3R_25842497_25842570;chr3R_25843988_25844128 100.00 100.00 100.00 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 33.33 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 NA K intron_retention BCL7-like chrX + chrX_9251299_9251595 chrX_9251298_9251299;chrX_9251595_9251596 chrX_9250515_9251298;chrX_9251596_9253415 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Lmpt,I_chr3L_16904612_16905228,I_chr3L_16904980_16905228 chr3L + chr3L_16904692_16905239 chr3L_16904692_16905228 chr3L_16903923_16904691;chr3L_16905240_16905328 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K cassette CG8449,RI_chr3R_9096632_9096844 chr3R - chr3R_9096632_9096844 chr3R_9096632_9096690;chr3R_9096788_9096844 chr3R_9096691_9096787 chr3R_9096532_9096631;chr3R_9096845_9096944 95.00 100.00 88.24 100.00 100.00 93.33 94.44 100.00 96.55 100.00 92.86 100.00 91.67 85.71 100.00 93.75 91.67 100.00 100.00 100.00 100.00 86.36 84.62 93.10 90.91 100.00 100.00 100.00 82.35 94.44 92.86 90.91 95.45 90.91 85.71 90.00 96.77 100.00 100.00 96.15 100.00 100.00 100.00 94.44 95.45 95.00 95.24 100.00 93.33 94.44 87.88 92.86 94.74 95.65 100.00 94.12 88.46 92.86 K intron_retention crol,I_chr2L_11799403_11802904 chr2L - chr2L_11800323_11802343 chr2L_11800322_11800323;chr2L_11802343_11802344 chr2L_11800155_11800322;chr2L_11802344_11802412 100.00 98.25 100.00 98.41 100.00 100.00 100.00 100.00 99.15 97.50 100.00 100.00 100.00 100.00 98.44 100.00 100.00 100.00 98.31 100.00 100.00 100.00 98.98 100.00 98.21 98.15 100.00 98.15 98.31 100.00 100.00 100.00 100.00 98.84 100.00 100.00 99.01 100.00 100.00 100.00 95.00 99.01 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD wdb,I_chr3R_23394314_23406731,I_chr3R_23394314_23406794,I_chr3R_23394314_23407159,RI_chr3R_23394314_23407186,I_chr3R_23394314_23407412,I_chr3R_23394314_23407715,I_chr3R_23394314_23407721,RI_chr3R_23406048_23406731,RI_chr3R_23406048_23406794,I_chr3R_23406048_23406928,RI_chr3R_23406048_23407402 chr3R - chr3R_23406048_23406865;chr3R_23406048_23407402;chr3R_23406048_23407723 chr3R_23406048_23406928 chr3R_23405948_23406047;chr3R_23407724_23407815 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.17 NA 0.00 0.00 NA 0.00 0.00 2.33 0.00 0.00 NA NA NA 0.00 NA NA NA K intron_retention flr chr3L + chr3L_13407249_13407436 chr3L_13407248_13407249;chr3L_13407436_13407437 chr3L_13407158_13407248;chr3L_13407437_13407700 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CaMKII,I_chr4_1059085_1060638,I_chr4_1059085_1065781,I_chr4_1069766_1069812,RI_chr4_1071236_1071315,RI_chr4_1071489_1071968,I_chr4_1071675_1071813,I_chr4_1071675_1071884 chr4 - chr4_1059064_1060638;chr4_1059085_1060638 chr4_1059061_1060638 chr4_1060639_1060704;chr4_1059054_1059060 70.59 NA NA 61.54 NA NA 53.85 80.00 60.87 NA NA 72.22 NA NA NA 76.47 NA NA 70.59 86.96 NA NA 69.23 NA NA NA NA NA NA NA 70.59 NA NA 73.68 NA NA NA NA NA 64.29 NA 75.00 NA NA NA NA NA NA 67.86 NA NA NA NA NA 80.00 NA NA 68.75 K intron_retention CG5315 chr3R - chr3R_18370028_18370086 chr3R_18370027_18370028;chr3R_18370086_18370087 chr3R_18369420_18370027;chr3R_18370087_18370279 99.27 100.00 100.00 100.00 96.88 100.00 98.43 99.25 98.68 100.00 100.00 98.29 100.00 100.00 100.00 99.27 98.00 95.74 98.80 99.02 100.00 100.00 98.33 98.28 97.06 100.00 95.52 100.00 100.00 100.00 98.65 100.00 96.00 99.23 100.00 100.00 96.67 96.67 100.00 98.33 100.00 100.00 100.00 97.87 97.30 98.72 100.00 97.56 99.26 100.00 98.36 97.30 100.00 100.00 98.68 100.00 100.00 98.00 K intron_retention Pde1c,esc,I_chr2L_11838774_11925541 chr2L - chr2L_11828908_11828969 chr2L_11828907_11828908;chr2L_11828969_11828970 chr2L_11828736_11828907;chr2L_11828970_11829103 4.00 12.00 3.33 17.65 4.35 0.00 4.76 7.41 6.82 7.69 0.00 5.26 0.00 5.56 0.00 0.00 0.00 6.67 0.00 10.53 5.26 3.85 0.00 2.86 14.29 11.76 22.22 25.00 6.25 0.00 30.30 3.70 5.00 8.57 4.00 9.09 0.00 6.90 4.26 1.96 9.52 2.50 0.00 0.00 0.00 8.11 6.25 0.00 4.17 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mr,I_chr2R_19861985_19862040 chr2R + chr2R_19860673_19860728 chr2R_19860672_19860673;chr2R_19860728_19860729 chr2R_19860156_19860672;chr2R_19860729_19860967 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 2.56 NA 0.00 0.00 NA 0.00 0.00 6.06 11.11 3.45 0.00 6.00 0.00 21.43 5.26 10.71 NA 0.00 6.45 0.00 NA 0.00 13.79 NA 0.00 0.00 6.67 NA 5.71 4.76 4.35 0.00 NA 0.00 NA 0.00 NA 0.00 10.53 NA 0.00 9.52 3.45 0.00 NA 0.00 NA 0.00 0.00 NA K alternative_donor sti,REI_chr3L_12506503_12506561 chr3L - chr3L_12506503_12506573 chr3L_12506503_12506561 chr3L_12506403_12506502;chr3L_12506574_12506661 12.71 6.67 9.80 9.84 10.71 18.18 14.00 14.75 10.00 11.11 9.09 11.43 14.29 9.52 26.32 11.54 12.12 11.76 20.00 13.79 13.16 20.69 16.39 19.05 12.82 18.75 8.89 15.00 4.35 13.79 18.18 NA 10.91 12.68 9.52 7.32 8.00 9.09 12.73 12.24 14.29 12.36 16.67 21.74 16.67 14.29 9.09 10.34 10.11 10.53 12.00 23.08 15.38 16.67 9.80 13.04 23.08 18.75 K intron_retention Rbm13 chrX + chrX_8796845_8797234 chrX_8796844_8796845;chrX_8797234_8797235 chrX_8796031_8796844;chrX_8797235_8797878 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.26 0.00 0.00 0.00 0.00 0.94 0.00 0.45 0.00 0.20 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.29 0.00 0.00 0.00 0.15 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.58 0.00 0.12 0.11 K intron_retention CG10249,I_chr2R_10790537_10790639 chr2R - chr2R_10789909_10790015 chr2R_10789908_10789909;chr2R_10790015_10790016 chr2R_10789708_10789908;chr2R_10790016_10790228 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 4.76 NA 0.00 2.38 0.00 0.00 0.00 0.00 5.00 0.00 NA 5.08 0.00 8.57 2.56 0.00 0.00 0.00 0.00 0.00 NA NA 4.76 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 2.22 NA 0.00 0.00 0.00 0.00 7.69 3.92 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 K jcn_only_AA CG17734,I_chr3R_7068286_7069503 chr3R - chr3R_7068286_7069503 chr3R_7068736_7069503 chr3R_7069504_7069603;chr3R_7068186_7068285 99.46 98.78 100.00 98.48 100.00 99.54 98.40 99.38 100.00 98.12 99.24 99.25 99.19 100.00 99.63 99.60 99.29 100.00 100.00 100.00 100.00 99.30 99.51 99.25 99.22 96.83 99.46 99.24 99.41 99.35 99.53 98.46 100.00 99.68 99.11 97.04 99.21 99.47 100.00 98.96 96.36 99.76 99.41 98.96 99.34 99.74 100.00 100.00 100.00 98.24 100.00 99.29 100.00 100.00 99.60 99.06 99.58 99.47 K jcn_only_AD CG42270,I_chrX_17615384_17615455,I_chrX_17639729_17640603 chrX + chrX_17615649_17630230 chrX_17629297_17630230 chrX_17630231_17630302 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA 7.69 5.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA l(2)k01209,I_chr2R_13308079_13310771,I_chr2R_13309452_13310771,RI_chr2R_13310877_13311160 chr2R + chr2R_13308079_13308952;chr2R_13308079_13308681;chr2R_13308079_13308147 chr2R_13308079_13311160 chr2R_13307979_13308078 92.43 92.98 95.35 88.89 NA 94.00 84.06 98.44 90.11 96.67 91.89 96.55 92.31 100.00 95.56 92.86 100.00 90.70 91.89 93.27 92.86 92.31 97.96 92.54 100.00 80.00 92.59 98.31 83.64 95.52 81.40 95.35 90.99 92.31 96.49 86.76 98.57 95.83 89.29 92.86 91.46 89.47 83.33 89.71 83.61 89.39 96.36 86.00 92.00 100.00 96.12 92.31 82.35 95.35 89.36 98.31 89.06 87.50 K cassette CG11367,I_chr3L_22724590_22725116 chr3L + chr3L_22722194_22725680 chr3L_22722194_22725116;chr3L_22725241_22725680 chr3L_22725117_22725240 chr3L_22721249_22722193;chr3L_22725681_22725842 91.67 92.86 100.00 90.91 90.00 100.00 92.31 100.00 94.12 85.71 100.00 100.00 50.00 100.00 83.33 100.00 100.00 100.00 100.00 90.91 100.00 82.35 82.35 94.44 83.33 85.71 100.00 87.50 83.33 78.57 80.00 90.91 91.67 91.67 87.50 62.50 86.36 100.00 94.12 93.75 100.00 95.00 100.00 85.71 70.00 88.24 100.00 100.00 92.31 85.00 70.59 90.91 75.00 100.00 92.31 91.67 80.00 69.23 K alternative_donor AGO2 chr3L + chr3L_15550996_15551349 chr3L_15551218_15551349 chr3L_15551350_15551438;chr3L_15550832_15550995 99.82 99.57 100.00 99.68 100.00 100.00 99.77 99.78 99.82 99.38 99.08 99.78 99.51 99.56 99.61 100.00 99.52 100.00 99.60 100.00 99.58 100.00 100.00 99.62 100.00 100.00 99.65 100.00 100.00 99.55 100.00 100.00 100.00 99.74 100.00 98.48 99.67 99.55 100.00 99.78 100.00 100.00 100.00 100.00 100.00 99.51 100.00 99.65 99.76 98.98 99.37 100.00 99.19 100.00 100.00 100.00 100.00 99.34 K intron_retention CG3719,E_chrX_1273406_1273479,I_chrX_1273406_1273486,RI_chrX_1273406_1273763 chrX - chrX_1273406_1274170 chrX_1273405_1273406;chrX_1274170_1274171 chrX_1273306_1273405;chrX_1274171_1274773 0.00 0.00 0.00 7.14 0.00 10.71 0.00 0.00 2.70 0.00 0.00 1.67 0.00 0.00 0.00 3.45 0.00 9.52 0.00 2.90 0.00 6.06 4.88 0.00 0.00 0.00 7.84 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 3.28 3.28 0.00 2.70 0.00 0.00 0.00 0.00 2.00 0.00 1.64 0.00 7.50 0.00 0.00 2.44 0.00 0.00 3.28 4.76 K intron_retention Doa,I_chr3R_24715823_24718923,I_chr3R_24747391_24747896 chr3R + chr3R_24713971_24714027 chr3R_24713970_24713971;chr3R_24714027_24714028 chr3R_24713819_24713970;chr3R_24714028_24714256 97.50 96.43 97.50 97.78 95.83 100.00 94.74 97.92 98.11 91.67 95.45 100.00 100.00 100.00 100.00 97.96 100.00 96.43 92.86 96.25 96.97 82.35 98.39 97.50 100.00 97.37 98.33 100.00 100.00 96.77 96.88 100.00 94.44 96.08 87.50 100.00 94.59 100.00 97.50 98.00 100.00 98.41 96.77 100.00 94.44 100.00 95.83 96.97 95.16 100.00 97.62 100.00 95.45 100.00 97.14 95.00 95.83 95.24 K intron_retention cryptocephal,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21312209_21314835 chr2L_21312208_21312209;chr2L_21314835_21314836 chr2L_21312125_21312208;chr2L_21314836_21314847 100.00 100.00 100.00 100.00 96.43 100.00 98.39 98.15 100.00 100.00 100.00 100.00 100.00 97.06 97.50 100.00 100.00 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 97.22 100.00 98.33 100.00 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette Aldh-III,RE_chr2R_3355332_3355720,I_chr2R_3356541_3356614,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3354556_3354978 chr2R_3354556_3354725;chr2R_3354816_3354978 chr2R_3354726_3354815 chr2R_3354549_3354555;chr2R_3354979_3354987 100.00 100.00 NA NA NA NA NA 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA 91.67 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 90.00 100.00 NA 100.00 88.89 100.00 NA 100.00 100.00 100.00 100.00 91.67 100.00 K alternative_donor CG9894,RE_chr2L_2752712_2753371,I_chr2L_2753119_2753371,RI_chr2L_2755946_2756007 chr2L + chr2L_2752712_2753371 chr2L_2752838_2753371 chr2L_2753372_2753471;chr2L_2752651_2752711 100.00 100.00 100.00 98.18 100.00 97.37 100.00 97.50 100.00 93.33 100.00 98.18 100.00 100.00 100.00 98.11 95.83 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 97.96 97.56 100.00 88.89 95.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 97.62 100.00 100.00 98.72 93.33 92.86 92.86 100.00 71.43 100.00 100.00 90.00 98.21 K intron_retention Rnp4F,I_chrX_5214525_5214591 chrX - chrX_5214254_5214314 chrX_5214253_5214254;chrX_5214314_5214315 chrX_5214031_5214253;chrX_5214315_5214524 99.00 98.53 100.00 97.62 100.00 97.22 100.00 100.00 98.98 100.00 100.00 100.00 100.00 97.14 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.13 96.30 100.00 97.56 100.00 98.08 98.51 98.28 97.73 100.00 100.00 98.25 100.00 100.00 100.00 100.00 99.08 99.02 98.44 99.00 100.00 98.59 96.39 98.92 97.59 99.00 98.85 98.63 98.91 96.36 98.61 98.78 94.12 98.73 98.85 98.72 N jcn_only_AA CG31431 chr3R + chr3R_17697863_17698131;chr3R_17697863_17697989 chr3R_17697863_17697938 chr3R_17697704_17697862;chr3R_17698132_17698247 0.00 0.00 0.00 0.00 0.00 0.00 9.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor mRpS24 chr3R - chr3R_19989118_19989189 chr3R_19989130_19989189 chr3R_19989190_19989258;chr3R_19989052_19989117 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 90.91 100.00 93.75 100.00 93.75 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA NA 93.33 100.00 NA 100.00 NA NA 96.15 90.91 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 93.33 K intron_retention CG12107 chr2R + chr2R_3562165_3562225 chr2R_3562164_3562165;chr2R_3562225_3562226 chr2R_3561950_3562164;chr2R_3562226_3562329 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 K intron_retention CG9915 chrX - chrX_16204341_16204411 chrX_16204340_16204341;chrX_16204411_16204412 chrX_16203854_16204340;chrX_16204412_16204819 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA rho-7,noncoding_6143 chr2R - chr2R_7875004_7875506 chr2R_7875007_7875506 chr2R_7875507_7875801;chr2R_7874791_7875003 98.41 98.61 98.63 97.37 98.11 100.00 97.14 97.37 98.18 100.00 100.00 97.22 97.96 95.74 96.97 100.00 97.78 100.00 97.37 97.93 100.00 97.30 97.78 100.00 98.44 97.50 98.67 94.74 98.21 97.70 100.00 96.92 99.17 100.00 100.00 100.00 99.04 100.00 99.26 100.00 98.21 100.00 97.83 100.00 97.89 98.89 98.08 98.67 97.85 98.85 97.94 98.21 97.10 100.00 98.41 96.70 100.00 100.00 K jcn_only_AD CG9175 chr2L - chr2L_6098492_6098932 chr2L_6098492_6098555 chr2L_6097544_6098491;chr2L_6098933_6099001 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.24 NA 100.00 95.65 100.00 NA NA NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA NA NA NA 98.00 100.00 NA 100.00 NA NA NA NA 100.00 NA NA NA 100.00 100.00 K jcn_only_AA mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818575_7818853;chr3R_7818607_7818853 chr3R_7818597_7818853 chr3R_7818854_7818892;chr3R_7818507_7818574 20.00 NA 25.00 30.00 NA NA 12.00 20.00 10.53 NA NA 27.59 NA 40.00 NA 13.79 14.29 NA 18.52 17.65 23.81 NA NA NA NA NA NA NA NA NA NA NA 13.33 21.05 NA NA NA NA NA NA NA 11.43 23.81 NA NA 19.05 NA NA 22.50 NA 18.18 NA NA NA 38.10 NA NA 21.88 K intron_retention CG10420 chr3R - chr3R_21060921_21060983 chr3R_21060920_21060921;chr3R_21060983_21060984 chr3R_21059358_21060920;chr3R_21060984_21061323 0.00 0.00 0.00 2.67 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545781_17545855;chr2R_17545686_17545855;chr2R_17545615_17545855 chr2R_17545799_17545855 chr2R_17545856_17545985;chr2R_17545613_17545614 0.00 NA NA 0.00 0.00 3.12 0.00 3.85 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 4.55 NA NA NA NA NA NA NA NA NA NA NA NA 3.12 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA 5.41 NA NA NA N alternative_donor CG34325,I_chrX_16609323_16614744,I_chrX_16613170_16614744 chrX - chrX_16610696_16614744 chrX_16610696_16610788 chrX_16610471_16610695;chrX_16614745_16614802 50.00 100.00 0.00 25.00 NA NA 25.00 20.00 33.33 50.00 50.00 100.00 NA 0.00 50.00 50.00 NA 100.00 50.00 50.00 0.00 50.00 100.00 25.00 50.00 100.00 100.00 25.00 50.00 33.33 0.00 100.00 100.00 50.00 33.33 50.00 50.00 50.00 20.00 50.00 NA 50.00 NA 50.00 NA 100.00 NA 50.00 50.00 0.00 33.33 50.00 NA NA 50.00 50.00 16.67 0.00 K alternative_acceptor CG31731,I_chr2L_13786850_13786922 chr2L + chr2L_13785976_13786279 chr2L_13785976_13786209 chr2L_13785797_13785975;chr2L_13786280_13786401 7.89 7.89 5.56 10.29 6.90 2.94 14.04 4.00 4.85 12.50 10.00 8.22 18.18 4.88 6.82 9.38 4.76 5.36 10.00 10.26 8.33 7.32 11.63 6.38 4.35 14.29 11.43 9.09 3.45 10.00 14.81 0.00 13.04 7.89 7.14 2.94 3.23 6.90 11.54 5.88 NA 6.98 12.00 4.00 5.56 10.71 0.00 8.11 8.64 8.33 14.29 5.56 NA 8.33 5.26 NA 8.57 0.00 K intron_retention CG1635,I_chr3R_27416864_27416939 chr3R + chr3R_27414713_27414765 chr3R_27414712_27414713;chr3R_27414765_27414766 chr3R_27414656_27414712;chr3R_27414766_27415008 5.88 NA NA NA NA NA 11.76 5.88 6.90 NA NA 15.79 NA NA 0.00 NA NA NA NA 5.56 NA NA 16.67 NA NA NA 10.00 5.88 NA 23.08 NA NA 0.00 0.00 NA NA 11.76 0.00 NA 6.67 NA 6.25 NA NA NA NA 0.00 NA 0.00 7.69 0.00 NA NA NA 0.00 NA 0.00 NA K intron_retention dnc,I_chrX_3150245_3150319,I_chrX_3150351_3152643 chrX + chrX_3226580_3228177 chrX_3226579_3226580;chrX_3228177_3228178 chrX_3226475_3226579;chrX_3228178_3228364 13.79 NA 0.00 2.17 18.75 22.22 53.33 15.15 17.65 NA NA 11.54 30.77 11.76 20.00 8.33 15.38 12.50 NA 12.77 NA NA 12.50 NA NA 11.76 NA NA NA NA 0.00 NA 41.67 16.67 NA 0.00 NA NA NA 13.64 NA 11.43 NA NA NA NA NA 25.00 13.95 NA NA NA NA NA 18.18 NA NA NA K alternative_donor pelo,I_chr2L_9707821_9708144,I_chr2L_9707891_9708144,I_chr2L_9708081_9708144 chr2L + chr2L_9707891_9708144;chr2L_9706747_9708144;chr2L_9707821_9708144 chr2L_9708081_9708144 chr2L_9708145_9708244;chr2L_9706647_9706746 0.00 0.00 0.00 1.22 0.00 0.00 2.08 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 1.43 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 K intron_retention Gel,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_66247_66310 chr3R_66246_66247;chr3R_66310_66311 chr3R_64541_66246;chr3R_66311_66436 1.18 0.56 1.16 2.34 1.59 0.78 0.86 1.34 1.33 1.72 0.70 1.10 0.92 0.50 0.84 2.15 1.21 0.47 1.32 1.25 0.85 2.94 1.83 0.85 0.00 0.99 2.82 0.00 1.67 1.38 1.55 1.26 1.28 1.18 2.07 1.74 1.87 0.94 1.08 2.16 0.98 1.37 1.86 0.74 0.65 1.32 1.24 1.92 1.26 0.81 0.66 1.52 0.00 0.86 0.77 0.75 0.91 0.68 K cassette nAcRbeta-96A,F_chr3R_20335970_20336619 chr3R - chr3R_20335362_20336623 chr3R_20335362_20335862;chr3R_20335970_20336623 chr3R_20335863_20335969 chr3R_20335323_20335361;chr3R_20336624_20336679 78.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 85.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 71.43 NA NA NA NA NA NA NA NA K alternative_donor chinmo chr2L + chr2L_1651713_1652774;chr2L_1651430_1652774 chr2L_1651412_1652774 chr2L_1652775_1653511;chr2L_1651300_1651411 4.55 5.26 4.17 2.63 0.00 8.00 0.00 1.85 1.67 0.00 5.00 7.84 3.33 3.85 8.82 7.69 4.55 3.85 3.33 7.55 5.00 0.00 3.57 7.14 6.25 8.33 7.14 8.33 10.00 18.18 3.45 0.00 4.76 4.00 0.00 17.65 0.00 0.00 6.67 4.55 11.11 7.94 4.00 3.57 11.11 0.00 0.00 3.57 3.77 0.00 8.33 23.53 7.14 9.09 3.03 0.00 6.25 12.50 K intron_retention CG31900,CG31607 chr2L + chr2L_8154312_8154981 chr2L_8154311_8154312;chr2L_8154981_8154982 chr2L_8154159_8154311;chr2L_8154982_8155111 12.90 NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA 31.58 NA 26.47 NA NA 15.38 NA 12.50 7.69 15.38 25.00 NA NA 17.39 33.33 NA 11.11 0.00 NA NA 12.90 NA NA NA NA 9.09 13.04 5.26 18.75 NA 0.00 6.67 NA NA NA NA NA 0.00 9.09 K alternative_acceptor CG32982,I_chr2L_9127467_9148754,EF_chr2L_9135385_9148841,F_chr2L_9149162_9154658 chr2L + chr2L_9162709_9163140;chr2L_9162709_9163294 chr2L_9162709_9163143 chr2L_9162363_9162708;chr2L_9163295_9163398 7.89 4.76 6.67 9.52 0.00 10.53 12.00 10.00 12.50 12.50 0.00 0.00 8.33 0.00 13.64 0.00 0.00 0.00 0.00 5.26 0.00 7.55 6.25 10.87 5.00 8.33 8.11 10.81 6.25 0.00 3.85 9.38 9.38 10.71 0.00 11.54 10.42 4.35 7.89 9.09 8.11 7.50 13.33 5.88 5.56 7.14 12.20 11.90 9.38 8.11 6.82 0.00 15.00 0.00 8.33 5.71 8.82 8.57 K intron_retention CG42379 chr2R - chr2R_17557199_17557259 chr2R_17557198_17557199;chr2R_17557259_17557260 chr2R_17557045_17557198;chr2R_17557260_17557420 4.65 0.00 0.00 25.45 7.69 0.00 12.50 12.73 5.88 10.53 11.11 10.91 3.70 0.00 4.65 4.65 4.55 0.00 6.45 5.38 0.00 6.35 5.26 0.00 9.09 21.88 6.35 5.56 34.48 0.00 1.92 6.67 0.00 3.64 0.00 17.31 3.45 2.27 11.86 7.35 20.00 6.35 0.00 1.75 0.00 0.00 3.92 7.69 9.84 4.44 6.02 3.45 0.00 1.82 3.12 4.88 0.00 0.00 K alternative_acceptor gpp,I_chr3R_2271795_2272181 chr3R + chr3R_2232814_2233271 chr3R_2232814_2233199 chr3R_2232804_2232813;chr3R_2233272_2233496 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.00 100.00 100.00 100.00 95.83 95.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 92.86 100.00 92.31 100.00 88.89 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 93.33 100.00 NA 100.00 100.00 94.44 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA 100.00 K intron_retention CG8051 chrX - chrX_19195757_19195832 chrX_19195756_19195757;chrX_19195832_19195833 chrX_19195377_19195756;chrX_19195833_19197125 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 1.68 2.00 0.00 0.00 0.00 0.00 2.56 2.44 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 3.30 2.97 4.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 2.99 0.00 2.00 0.00 1.80 0.00 K intron_retention cenB1A chr3R + chr3R_18946976_18947058 chr3R_18946975_18946976;chr3R_18947058_18947059 chr3R_18946959_18946975;chr3R_18947059_18947354 0.00 NA NA 15.38 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA 4.76 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 4.00 NA NA NA NA NA NA NA NA NA K alternative_donor CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2439416_2439498;chr3L_2436229_2439498 chr3L_2435133_2439498 chr3L_2439499_2439583;chr3L_2434626_2435132 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention rin,I_chr3R_9476825_9476895 chr3R + chr3R_9472923_9474639 chr3R_9472922_9472923;chr3R_9474639_9474640 chr3R_9472709_9472922;chr3R_9474640_9476216 0.00 0.00 0.00 0.36 2.86 1.69 1.09 1.71 2.04 0.00 0.00 0.00 0.00 0.00 0.00 1.80 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.70 0.00 3.77 0.00 NA 0.00 0.00 1.50 0.00 0.00 2.94 0.00 0.00 2.50 0.00 0.00 0.00 K intron_retention Fur2,RI_chrX_16267905_16268958,I_chrX_16270205_16270272,I_chrX_16274795_16274867 chrX + chrX_16273497_16273594 chrX_16273496_16273497;chrX_16273594_16273595 chrX_16273274_16273496;chrX_16273595_16273880 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG31678,I_chr2L_20661149_20674994,I_chr2L_20664450_20667865,RI_chr2L_20671102_20674994 chr2L - chr2L_20661149_20661989 chr2L_20661148_20661149;chr2L_20661989_20661990 chr2L_20661049_20661148;chr2L_20661990_20663929 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.93 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Flo-2 chrX + chrX_14818447_14819678 chrX_14818446_14818447;chrX_14819678_14819679 chrX_14818259_14818446;chrX_14819679_14819712 28.18 NA NA 8.82 NA NA NA 29.41 40.00 NA NA NA NA NA NA 25.00 NA NA NA 27.78 NA NA NA NA NA NA NA NA NA NA NA NA 15.79 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 28.57 29.41 NA NA NA NA NA NA NA NA 36.36 N jcn_only_AD RpS27A,Ip259 chr2L + chr2L_10408387_10408738 chr2L_10408622_10408738 chr2L_10408739_10409132;chr2L_10408376_10408386 9.42 9.29 6.69 16.47 7.08 7.17 18.23 6.55 9.42 58.24 3.50 3.44 15.08 5.29 5.04 11.62 6.41 0.00 6.78 5.83 7.59 19.19 31.58 15.00 7.33 0.00 41.67 56.00 18.72 45.24 7.47 0.00 16.42 5.65 63.89 59.26 8.43 24.00 5.33 23.68 37.78 5.32 8.46 0.00 0.00 50.00 20.38 21.43 7.31 17.33 51.35 0.00 23.58 47.73 3.18 15.48 27.69 23.73 K alternative_donor cav chr3R + chr3R_20047648_20048064;chr3R_20047476_20048064 chr3R_20047349_20048064 chr3R_20048065_20048196;chr3R_20047247_20047348 40.00 NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG12338 chr2R - chr2R_6617909_6617989 chr2R_6617908_6617909;chr2R_6617989_6617990 chr2R_6617763_6617908;chr2R_6617990_6618113 25.00 NA NA NA NA NA NA NA NA NA NA 26.67 NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA 35.71 NA NA NA NA NA 26.67 NA NA 13.04 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 K alternative_acceptor B4,I_chr2L_13513474_13549131,I_chr2L_13547133_13549131,I_chr2L_13547162_13547692,I_chr2L_13547304_13549131 chr2L - chr2L_13547304_13549131;chr2L_13547133_13549131 chr2L_13547162_13549131 chr2L_13549132_13549231;chr2L_13547062_13547132 75.00 72.73 56.25 83.33 66.67 66.67 52.38 70.00 69.57 83.33 85.71 59.09 55.56 75.00 50.00 63.64 54.55 57.14 62.50 80.77 80.00 85.71 77.27 81.82 84.62 72.73 68.42 76.47 81.25 82.61 64.71 75.00 69.57 55.56 83.33 70.59 75.00 76.92 80.00 86.96 75.00 66.67 70.00 76.19 75.00 86.36 70.59 80.95 66.67 76.47 81.25 75.00 NA 80.00 61.11 64.29 64.29 77.78 K intron_retention RpL29,I_chr2R_17184688_17191389 chr2R + chr2R_17181295_17181354 chr2R_17181294_17181295;chr2R_17181354_17181355 chr2R_17181294_17181294;chr2R_17181355_17181379 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 98.73 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 100.00 95.00 NA NA 92.31 100.00 100.00 NA NA 100.00 NA 100.00 100.00 NA 97.83 NA NA 100.00 NA NA 100.00 100.00 98.48 100.00 NA 100.00 NA NA 100.00 97.92 88.89 NA 100.00 100.00 NA 100.00 NA 100.00 96.30 K alternative_acceptor CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1666133_1670281 chr2R_1666219_1670281 chr2R_1670282_1670304;chr2R_1666119_1666132 94.39 95.45 96.15 85.00 93.75 94.44 93.33 93.22 89.83 100.00 88.89 95.65 92.11 93.33 84.62 94.74 86.21 95.00 96.97 94.34 95.24 95.65 95.65 100.00 100.00 93.75 95.83 NA 90.48 81.48 96.67 95.45 97.14 94.74 91.67 100.00 92.31 92.31 93.33 94.87 100.00 100.00 100.00 95.83 84.21 95.65 88.24 87.72 92.75 94.74 96.43 88.89 93.33 93.75 91.89 95.24 90.48 89.06 K jcn_only_AD EI_chr2L_13164741_13164824,Sfmbt chr2L - chr2L_13170785_13171381 chr2L_13170785_13171312 chr2L_13169657_13170784;chr2L_13171382_13171665 40.82 40.00 29.41 46.99 44.00 21.74 44.74 52.27 54.48 18.52 53.85 40.00 32.43 50.00 38.18 40.82 46.81 45.90 62.96 46.56 48.00 5.06 45.45 48.48 31.48 43.75 47.00 18.03 34.33 35.94 40.00 32.61 36.90 46.15 15.38 37.50 50.90 54.93 41.41 51.19 34.48 37.39 31.25 43.18 23.94 33.80 51.11 14.67 45.54 40.78 36.25 42.86 40.68 41.51 38.03 44.62 63.29 26.19 K intron_retention Eaf,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3286315_3286375 chr2R_3286314_3286315;chr2R_3286375_3286376 chr2R_3285723_3286314;chr2R_3286376_3286829 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 2.99 6.94 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 1.52 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 N alternative_acceptor CG31431 chr3R + chr3R_17697863_17697938;chr3R_17697863_17697989 chr3R_17697863_17698131 chr3R_17697704_17697862;chr3R_17698132_17698247 94.74 93.81 96.35 95.37 94.90 96.36 58.80 93.60 95.40 91.67 94.03 94.49 85.60 93.15 94.23 95.20 94.74 93.98 93.10 95.54 95.42 92.04 95.58 95.65 88.12 91.53 95.18 90.36 95.45 97.52 95.17 93.69 96.06 95.30 92.45 94.74 95.50 95.24 98.51 92.68 76.15 95.02 93.23 95.45 92.86 94.00 96.67 91.47 91.52 95.83 96.36 91.57 96.51 95.24 94.80 93.98 96.69 93.33 N jcn_only_AD myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_715043_716322;chr4_715043_716482;chr4_715043_716613;chr4_715043_715839 chr4_715043_716708 chr4_714007_715042;chr4_716709_716712 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 NA 0.00 NA NA 0.00 0.00 NA NA 3.70 0.00 NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K jcn_only_AD CG11309,I_chr3L_21297192_21297708 chr3L - chr3L_21297192_21297389;chr3L_21297192_21297542 chr3L_21297192_21297487 chr3L_21297092_21297191;chr3L_21297543_21297554 9.52 NA 10.00 3.70 NA 13.04 6.25 10.34 14.00 NA NA 29.41 NA NA NA 4.17 NA NA 25.81 3.70 NA NA NA 19.05 NA NA NA NA 9.52 NA 12.12 8.70 7.41 9.38 NA NA NA NA NA NA NA 7.69 NA NA NA 9.52 NA 0.00 8.33 NA NA NA NA NA 12.00 NA 4.17 12.82 K multi_cassette Crk,RI_chr4_231302_233315,RI_chr4_231307_231369,RI_chr4_231307_232217,I_chr4_231307_232253 chr4 + chr4_231307_233253 chr4_231307_232479;chr4_232609_232740;chr4_232901_233253 chr4_232480_232608;chr4_232741_232900 chr4_231208_231306;chr4_233254_233355 14.09 NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA 6.67 20.00 NA NA 18.18 NA NA NA NA NA NA NA NA 9.52 K alternative_acceptor wge chr3R - chr3R_18542387_18542655;chr3R_18542390_18542655 chr3R_18542354_18542655 chr3R_18542656_18542685;chr3R_18540256_18542353 70.71 77.42 75.00 60.00 64.29 NA 26.67 78.57 73.17 83.33 NA 54.84 NA 53.85 81.25 55.56 NA NA 50.00 64.52 72.73 53.57 76.74 76.00 68.18 50.00 68.00 60.00 51.43 62.50 71.43 70.83 75.95 82.61 78.57 31.03 72.00 83.87 79.55 65.57 56.00 72.97 63.64 68.75 76.47 70.59 93.33 60.61 73.33 63.64 57.14 40.00 86.96 83.33 82.35 40.00 88.00 81.08 K jcn_only_AD CG13197,RI_chr2R_7580554_7581978 chr2R + chr2R_7580051_7581978 chr2R_7580554_7581978 chr2R_7581979_7582078;chr2R_7580004_7580050 0.00 NA NA 0.00 NA NA 3.70 3.45 2.56 NA NA 0.00 NA NA 0.00 2.70 NA NA NA 2.44 NA NA 0.00 NA NA 0.00 0.00 NA NA NA 6.45 NA NA 0.00 NA NA NA NA 0.00 0.00 NA 0.00 NA 0.00 NA NA NA NA 0.00 0.00 NA NA NA NA NA 3.70 0.00 0.00 K intron_retention Ptpmeg,I_chr3L_353688_353782,I_chr3L_355125_355175 chr3L + chr3L_355690_355752 chr3L_355689_355690;chr3L_355752_355753 chr3L_355438_355689;chr3L_355753_355883 91.67 96.97 89.29 100.00 89.29 84.62 85.94 98.55 91.43 89.47 87.10 77.78 92.31 96.55 83.87 97.40 92.11 85.71 88.64 96.20 87.50 84.78 98.11 97.37 85.29 80.00 97.44 96.00 85.71 81.82 87.88 93.75 91.67 93.85 96.55 96.88 95.45 93.33 88.00 92.73 81.82 96.61 87.88 93.75 87.88 92.00 86.05 92.59 91.18 96.43 91.84 90.24 95.45 88.57 97.22 87.76 90.74 94.34 K intron_retention spri,I_chrX_10404621_10469422,I_chrX_10413811_10440661,I_chrX_10417598_10440661 chrX - chrX_10438626_10440661 chrX_10438625_10438626;chrX_10440661_10440662 chrX_10438419_10438625;chrX_10440662_10440749 9.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 7.14 NA NA NA NA NA NA NA NA NA K alternative_donor RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522912_523360;chrX_522912_523215;chrX_522912_523414;chrX_522912_523194;chrX_522912_523323 chrX_522912_523389 chrX_522849_522911;chrX_523415_523436 0.69 0.00 0.87 0.36 1.20 1.06 0.61 0.76 0.76 0.91 0.00 0.48 0.00 1.25 1.12 1.29 0.00 0.00 0.00 1.00 0.00 0.65 0.00 0.88 1.11 0.00 0.00 0.91 1.27 1.10 1.03 0.41 0.54 1.63 1.39 1.04 0.54 1.05 0.00 0.38 1.92 0.60 0.00 0.41 0.56 1.40 0.00 1.57 0.56 1.02 1.03 0.00 0.80 0.88 2.91 0.00 0.44 0.69 K intron_retention CG5515,I_chr3R_20017846_20017911,I_chr3R_20018643_20018703 chr3R - chr3R_20014330_20014391 chr3R_20014329_20014330;chr3R_20014391_20014392 chr3R_20014238_20014329;chr3R_20014392_20014479 36.73 43.75 29.41 39.02 66.67 36.84 50.00 40.00 32.73 16.67 47.62 26.15 42.86 31.25 37.14 35.42 34.78 34.29 42.31 40.00 42.86 50.00 34.88 40.54 47.83 75.00 64.00 55.00 42.86 28.57 32.56 50.00 36.00 28.57 22.22 32.00 35.29 33.33 32.00 27.78 65.00 26.92 33.33 48.00 48.15 45.00 20.45 41.67 34.55 36.36 24.44 45.16 22.22 37.93 34.38 39.29 32.14 36.73 K intron_retention Idgf2,Idgf3 chr2L + chr2L_16451308_16451375 chr2L_16451307_16451308;chr2L_16451375_16451376 chr2L_16451190_16451307;chr2L_16451376_16451927 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.28 0.23 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.28 0.51 0.00 0.00 0.00 0.00 0.12 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.23 0.00 0.12 0.30 0.00 1.18 0.60 0.00 0.00 0.26 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.19 0.00 K jcn_only_AA CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516728_21516994;chr3L_21516728_21517023 chr3L_21516728_21517821 chr3L_21516383_21516727 93.48 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA 86.96 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N jcn_only_AD I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545767_17545850;chr2R_17545615_17545850;chr2R_17545781_17545850;chr2R_17545686_17545850;chr2R_17545690_17545850 chr2R_17545799_17545850 chr2R_17545851_17545985;chr2R_17545613_17545614 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention l(1)G0334,I_chrX_4596624_4596856,I_chrX_4596625_4596762 chrX + chrX_4596625_4596856 chrX_4596624_4596625;chrX_4596856_4596857 chrX_4596525_4596624;chrX_4596857_4596862 20.96 22.22 21.37 23.03 15.73 14.29 45.89 19.40 24.50 14.71 21.98 28.04 26.67 16.67 14.97 18.35 19.83 21.10 27.19 20.96 25.25 39.13 14.74 20.75 31.82 35.48 16.28 9.09 26.47 19.30 18.06 22.41 16.88 22.12 24.24 67.44 26.25 19.48 19.78 19.85 38.30 20.35 24.32 19.44 22.54 19.44 21.98 19.72 19.32 24.53 21.21 20.55 18.18 22.81 21.25 16.28 15.91 13.10 K intron_retention CG5003 chr3R - chr3R_23741456_23741513 chr3R_23741455_23741456;chr3R_23741513_23741514 chr3R_23741333_23741455;chr3R_23741514_23741784 0.00 4.17 4.88 5.80 0.00 0.00 0.00 3.51 0.00 NA 0.00 1.37 0.00 0.00 1.82 0.00 5.56 0.00 0.00 0.00 0.00 0.00 1.25 1.41 0.00 0.00 10.94 6.25 0.00 0.00 0.00 0.00 0.00 1.82 0.00 4.55 0.00 0.00 0.00 2.60 3.85 4.88 0.00 0.00 0.00 0.00 8.51 0.00 2.70 0.00 0.00 0.00 0.00 2.17 2.13 0.00 0.00 0.00 K jcn_only_AA l(3)82Fd,I_chr3R_1125296_1161435,I_chr3R_1125296_1175189,I_chr3R_1129905_1148709,I_chr3R_1129905_1160126,I_chr3R_1131576_1133656,I_chr3R_1131693_1133665,I_chr3R_1147660_1148709 chr3R - chr3R_1131576_1133665 chr3R_1131693_1133665 chr3R_1133666_1133756 36.00 NA 35.71 NA NA 25.00 NA 33.33 29.41 NA NA 41.86 53.33 40.00 34.38 25.00 NA NA 51.85 60.53 NA NA NA NA NA 66.67 NA NA NA NA 48.28 NA NA 39.47 NA NA NA NA NA NA NA 39.53 36.00 NA NA NA NA NA 32.14 NA 25.00 NA NA NA 36.00 NA NA NA K intron_retention CG32000,RI_chr4_153025_153811,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_155591_155927,I_chr4_157794_157864 chr4 + chr4_153858_154213 chr4_153857_153858;chr4_154213_154214 chr4_153815_153857;chr4_154214_154339 13.75 NA NA 45.45 NA NA 18.18 10.53 8.33 NA NA 8.70 NA NA NA 8.33 NA NA NA 15.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA NA NA K intron_retention I_chr3L_3223943_3224313,CG11505 chr3L + chr3L_3225834_3226876 chr3L_3225833_3225834;chr3L_3226876_3226877 chr3L_3225823_3225833;chr3L_3226877_3227705 45.16 NA NA 46.67 NA NA 50.00 71.43 53.33 NA NA 45.16 69.23 53.33 36.36 47.06 NA NA NA 40.00 NA 52.00 40.00 NA 30.77 63.64 NA 46.67 47.06 40.00 29.17 NA 40.00 52.63 30.77 38.46 NA NA 0.00 44.44 NA 42.31 NA NA NA NA NA 33.33 47.06 NA 20.00 NA NA NA 45.45 NA NA NA K multi_cassette Tif-IA,RI_chr2L_22250854_22257652 chr2L + chr2L_22250854_22257652 chr2L_22250854_22253193;chr2L_22253333_22253424;chr2L_22253686_22253745;chr2L_22253922_22257652 chr2L_22253194_22253332;chr2L_22253425_22253685;chr2L_22253746_22253921 chr2L_22250754_22250853;chr2L_22257653_22257752 92.86 90.00 88.89 55.10 97.37 89.74 91.67 98.81 90.29 100.00 100.00 92.75 80.00 92.68 91.11 91.14 91.84 81.58 90.00 98.70 100.00 96.67 97.87 91.30 82.14 61.54 95.83 100.00 55.56 94.44 91.84 97.06 89.47 95.24 96.43 94.12 96.77 92.86 96.67 93.44 90.00 96.34 86.96 83.93 97.06 96.49 100.00 89.80 91.86 97.30 97.56 91.89 95.65 96.00 95.08 100.00 92.00 91.86 K jcn_only_AD scu,RhoGAP16F chrX + chrX_17987656_17989117;chrX_17988131_17989117;chrX_17987638_17989117 chrX_17988127_17989117 chrX_17989118_17990486;chrX_17987544_17987637 15.27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA 16.90 NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA 13.64 NA NA NA NA NA NA NA NA NA K alternative_acceptor exba,I_chr3R_1423660_1424665,I_chr3R_1424091_1424665,snoRNA:Psi28S-2442b,snoRNA:Psi28S-2442a,I_chr3R_1425087_1425925,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1423967_1424665 chr3R_1424065_1424665 chr3R_1424666_1424765;chr3R_1423926_1423966 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.79 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.58 100.00 100.00 100.00 100.00 100.00 K intron_retention Rho1,I_chr2R_11990455_11992537,RI_chr2R_11991687_11992537 chr2R + chr2R_11990326_11991115 chr2R_11990325_11990326;chr2R_11991115_11991116 chr2R_11990232_11990325;chr2R_11991116_11991279 99.66 99.61 99.67 99.43 99.51 98.55 99.41 99.65 99.55 100.00 100.00 99.81 99.30 99.72 99.03 99.69 99.59 100.00 99.72 99.58 100.00 99.33 99.38 99.70 99.45 99.68 99.69 98.29 96.75 100.00 99.72 100.00 100.00 99.80 100.00 99.28 98.65 99.49 99.64 100.00 100.00 99.83 99.25 99.61 99.39 99.62 99.66 100.00 99.85 99.56 100.00 99.58 100.00 100.00 99.73 99.63 99.66 100.00 K intron_retention heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27683694_27690318 chr3R_27683693_27683694;chr3R_27690318_27690319 chr3R_27683601_27683693;chr3R_27690319_27690352 0.00 0.00 0.00 6.25 5.00 11.76 0.00 5.88 7.69 0.00 NA 3.45 5.88 NA NA 0.00 NA 0.00 3.85 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 3.70 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 5.71 10.00 NA NA 0.00 0.00 0.00 5.00 7.14 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Pak,RI_chr3R_2181143_2181934 chr3R + chr3R_2179971_2180635 chr3R_2179973_2180635 chr3R_2180636_2180902;chr3R_2179902_2179970 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 90.00 NA 100.00 100.00 100.00 NA NA NA 100.00 NA NA NA NA 83.33 NA 100.00 87.50 NA NA NA NA NA 92.86 NA 100.00 NA NA NA NA 100.00 NA 90.00 NA 100.00 NA NA NA 100.00 100.00 K jcn_only_AA CG3907,I_chr2R_19907866_19907906,I_chr2R_19909065_19909249,I_chr2R_19909692_19909755 chr2R - chr2R_19907845_19907906 chr2R_19907866_19907906 chr2R_19907907_19908006;chr2R_19907766_19907844 0.92 0.00 2.44 2.60 1.92 0.95 0.52 1.49 0.76 1.28 0.00 1.44 2.04 0.81 0.69 2.14 2.65 0.76 0.00 0.92 0.00 0.65 0.89 2.54 2.82 0.71 0.00 5.66 0.99 0.00 1.17 1.74 0.83 0.47 0.00 0.81 0.00 3.70 0.82 2.52 0.00 1.03 0.97 0.90 1.94 0.00 0.61 4.20 2.36 1.40 0.69 0.00 0.00 0.00 1.31 2.78 2.07 1.17 K intron_retention CG12877 chr3R + chr3R_23533041_23533098 chr3R_23533040_23533041;chr3R_23533098_23533099 chr3R_23532883_23533040;chr3R_23533099_23534051 0.00 0.00 0.00 4.76 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Taf4,I_chr3L_16107821_16107893 chr3L + chr3L_16107821_16108768 chr3L_16107820_16107821;chr3L_16108768_16108769 chr3L_16107721_16107820;chr3L_16108769_16108930 7.14 4.21 8.20 3.92 8.16 7.14 5.88 7.79 6.88 10.48 21.62 18.12 8.51 4.65 8.00 11.48 6.82 2.38 5.26 4.29 16.67 13.14 5.77 4.67 2.38 10.26 6.09 6.72 14.95 5.51 11.76 10.94 13.04 6.60 5.06 4.46 4.06 4.14 3.21 13.07 8.47 6.98 2.94 8.27 7.69 8.33 5.49 14.89 7.50 4.71 3.97 8.06 8.97 3.03 8.33 3.90 7.46 23.46 K jcn_only_AD CG8173,I_chrX_17602681_17603175 chrX - chrX_17602681_17603214 chrX_17602681_17603175 chrX_17602581_17602680;chrX_17603215_17603275 1.40 0.00 2.78 2.13 0.00 1.54 1.72 0.00 1.80 0.00 4.35 1.43 3.85 0.00 5.17 0.87 0.00 1.30 1.41 0.00 0.00 NA 3.41 0.00 1.92 1.61 6.74 4.55 0.00 3.08 17.91 0.00 2.78 2.11 0.00 0.00 0.00 0.00 1.46 1.79 0.00 2.36 1.61 3.17 0.00 2.86 1.20 1.92 1.02 1.39 0.98 0.00 0.00 1.19 0.00 4.60 0.00 1.69 K alternative_acceptor CG1603 chr2R - chr2R_3403403_3403472 chr2R_3403412_3403472 chr2R_3403473_3403878;chr2R_3403148_3403402 100.00 NA NA 100.00 NA NA NA 87.50 94.12 NA NA 90.00 NA NA NA 90.00 NA NA NA 100.00 NA 100.00 NA NA NA NA 100.00 NA 100.00 100.00 NA 100.00 92.31 100.00 NA NA NA NA 100.00 100.00 100.00 90.00 NA 100.00 NA 91.67 NA 96.00 100.00 NA NA NA NA NA NA NA NA 100.00 K jcn_only_AD Shawn_Tyler,RpS10b chrX + chrX_19492107_19492181 chrX_19492111_19492181 chrX_19492182_19492238;chrX_19492047_19492106 4.00 4.26 3.37 8.27 7.81 2.11 7.87 4.06 2.48 7.14 3.85 4.38 1.35 4.84 2.68 4.13 1.69 2.56 3.79 5.63 2.70 4.65 2.50 3.85 0.00 7.69 4.00 7.41 2.30 5.83 3.36 2.27 4.26 3.12 5.88 2.86 8.77 2.27 1.49 4.71 5.70 3.24 6.85 8.89 3.90 2.72 2.94 5.59 3.24 10.96 6.98 6.38 6.10 2.70 3.25 4.94 4.48 3.25 N cassette cryptocephal,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21312044_21318126 chr2L_21312044_21312124;chr2L_21312209_21318126 chr2L_21312125_21312208 chr2L_21311984_21312043;chr2L_21318127_21318416 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.82 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor EloA chr3R + chr3R_19077508_19077970 chr3R_19077680_19077970 chr3R_19077971_19078558;chr3R_19077294_19077507 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K mutually_exclusive cora,I_chr2R_15125277_15130573,I_chr2R_15125940_15130208,I_chr2R_15129291_15129988 chr2R + chr2R_15125940_15129678,chr2R_15129901_15130208 chr2R_15125940_15128720,chr2R_15129291_15130208 chr2R_15129679_15129900 chr2R_15128721_15129290 chr2R_15125887_15125939;chr2R_15130209_15130308 66.67 NA NA 66.67 NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA 100.00 NA K intron_retention Crk,RI_chr4_231302_233315,I_chr4_231307_232253 chr4 + chr4_230975_231063 chr4_230974_230975;chr4_231063_231064 chr4_230956_230974;chr4_231064_231112 100.00 92.31 94.44 97.87 NA 100.00 97.67 100.00 97.87 NA 100.00 100.00 96.43 100.00 100.00 94.00 100.00 100.00 100.00 97.30 100.00 100.00 91.67 100.00 100.00 100.00 100.00 NA NA NA 100.00 90.91 NA 97.14 91.67 NA 100.00 100.00 NA 100.00 NA 96.67 100.00 100.00 100.00 91.67 100.00 100.00 97.22 92.86 100.00 91.67 NA NA 100.00 90.00 93.33 92.86 K intron_retention CG7185 chr3L - chr3L_8305851_8306110 chr3L_8305850_8305851;chr3L_8306110_8306111 chr3L_8305384_8305850;chr3L_8306111_8306251 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.65 0.00 0.00 1.96 4.26 0.00 0.00 0.00 0.00 0.00 0.00 1.43 4.17 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 1.28 K intron_retention ND42,RI_chr3R_17861471_17861539 chr3R + chr3R_17854871_17854937 chr3R_17854870_17854871;chr3R_17854937_17854938 chr3R_17853742_17854870;chr3R_17854938_17855115 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 1.17 1.23 0.78 0.00 0.00 0.00 0.68 0.52 0.00 0.00 0.00 0.00 0.37 0.27 0.63 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.61 0.46 0.00 0.00 0.00 0.00 0.42 0.96 0.84 K alternative_donor exba,RI_chr3R_1425087_1425302,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1425087_1426209;chr3R_1425087_1426125;chr3R_1425087_1426009 chr3R_1425087_1425759 chr3R_1424987_1425086;chr3R_1426210_1426225 85.71 86.67 87.50 76.19 100.00 83.33 80.95 88.00 78.38 80.00 100.00 92.86 72.73 87.50 81.25 88.57 100.00 81.25 90.00 90.91 100.00 100.00 84.00 80.00 100.00 100.00 84.62 92.86 100.00 84.62 84.21 85.71 94.74 90.62 92.86 100.00 73.33 88.89 88.89 85.71 90.91 83.33 80.00 79.17 75.00 80.77 90.00 86.96 80.00 78.95 72.22 83.33 87.50 80.00 81.25 92.31 70.00 75.00 K alternative_acceptor Stat92E,I_chr3R_16365079_16365145,att-ORFB chr3R - chr3R_16365058_16365121 chr3R_16365079_16365121 chr3R_16365122_16365188;chr3R_16364979_16365057 54.74 55.12 57.72 55.19 61.62 52.17 52.31 52.04 57.00 51.52 57.14 53.67 50.79 53.06 63.08 56.71 55.14 56.85 61.03 55.41 56.15 53.25 50.00 53.02 41.77 53.23 54.74 51.79 58.82 55.29 55.33 63.16 61.19 56.78 50.00 51.52 51.66 51.08 57.65 53.38 54.55 56.30 56.12 65.93 58.46 48.42 53.61 64.15 54.47 50.41 45.18 44.83 51.47 58.25 55.86 53.27 53.95 68.29 K intron_retention shi,RI_chrX_15786633_15786860,RE_chrX_15793108_15795563 chrX + chrX_15793108_15795576 chrX_15793107_15793108;chrX_15795576_15795577 chrX_15793008_15793107;chrX_15795577_15795663 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 2.13 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor spi,I_chr2L_19569183_19577185,I_chr2L_19569227_19572142,I_chr2L_19569227_19577173,mir-2a-2,mir-2a-1,mir-2b-2 chr2L - chr2L_19569227_19577185 chr2L_19569227_19577173 chr2L_19569127_19569226;chr2L_19577186_19577273 2.50 0.00 0.00 1.68 5.26 0.00 3.39 1.92 5.77 NA 0.00 4.60 3.23 4.00 3.23 3.39 3.23 0.00 3.57 5.88 0.00 2.56 0.00 0.00 0.00 3.12 2.22 0.00 3.28 0.00 6.52 0.00 NA 5.26 0.00 2.50 5.56 NA 4.35 2.38 0.00 2.04 0.00 0.00 0.00 0.00 3.33 5.56 4.76 5.71 0.00 6.06 11.76 0.00 2.50 3.70 5.56 0.00 K intron_retention sec23,I_chr3R_1474873_1475080,I_chr3R_1474899_1475080,I_chr3R_1474960_1475051,I_chr3R_1477727_1478102 chr3R + chr3R_1474960_1475080 chr3R_1474959_1474960;chr3R_1475080_1475081 chr3R_1474924_1474959;chr3R_1475081_1475151 18.94 17.65 17.65 12.70 29.17 23.21 21.49 18.92 25.71 27.45 21.31 18.52 14.94 20.27 25.71 13.77 30.99 20.00 18.87 17.99 24.59 24.05 12.70 13.79 20.29 18.60 14.05 21.78 38.67 15.62 22.47 18.52 50.00 18.85 16.36 11.69 18.37 14.29 13.98 21.00 35.48 22.56 13.85 10.31 34.38 23.81 16.13 31.25 19.54 18.94 13.04 17.28 25.40 18.00 22.00 16.47 23.15 32.08 K intron_retention CG7324,I_chr3L_21335553_21335702,I_chr3L_21340055_21342206 chr3L - chr3L_21336198_21336675 chr3L_21336197_21336198;chr3L_21336675_21336676 chr3L_21336031_21336197;chr3L_21336676_21336804 0.00 0.00 2.22 5.00 0.00 2.22 2.35 3.49 4.76 0.00 7.41 2.35 0.00 3.28 3.39 0.00 0.00 0.00 0.00 1.83 5.00 0.00 1.54 0.00 0.00 4.69 1.37 0.00 3.57 0.00 2.78 NA 0.00 1.20 0.00 0.00 2.74 0.00 1.56 1.41 0.00 3.49 0.00 0.00 0.00 0.00 0.00 0.00 1.12 3.70 3.03 5.00 0.00 0.00 3.77 0.00 0.00 0.00 K intron_retention vig2 chr3R + chr3R_20950846_20950905 chr3R_20950845_20950846;chr3R_20950905_20950906 chr3R_20950747_20950845;chr3R_20950906_20950919 99.83 99.80 100.00 100.00 99.60 99.71 100.00 100.00 99.67 99.75 100.00 99.85 100.00 100.00 99.77 99.71 99.59 100.00 99.68 99.85 99.66 99.53 99.83 99.84 99.73 99.34 99.77 99.84 99.78 99.77 99.72 100.00 99.73 100.00 99.72 99.73 100.00 99.82 99.86 99.84 100.00 99.85 99.63 100.00 100.00 100.00 99.59 99.82 99.84 100.00 99.80 100.00 99.85 99.80 99.74 99.83 99.87 99.91 K intron_retention CG30000,I_chr2R_5495525_5495581 chr2R + chr2R_5494269_5494329 chr2R_5494268_5494269;chr2R_5494329_5494330 chr2R_5493952_5494268;chr2R_5494330_5494663 0.00 0.00 0.00 0.63 0.00 0.00 1.35 0.55 0.00 0.00 4.05 0.51 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 1.27 1.23 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32649 chrX - chrX_12793774_12794127 chrX_12793773_12793774;chrX_12794127_12794128 chrX_12793556_12793773;chrX_12794128_12795109 99.16 98.25 97.50 100.00 100.00 100.00 98.25 100.00 97.73 100.00 100.00 98.78 100.00 100.00 100.00 100.00 96.88 97.92 100.00 97.50 100.00 97.67 98.84 98.81 100.00 100.00 94.19 96.77 100.00 95.52 100.00 97.87 100.00 100.00 100.00 100.00 99.16 100.00 99.04 98.77 100.00 98.82 100.00 98.53 98.48 98.55 98.46 96.00 100.00 97.22 100.00 100.00 98.00 98.48 100.00 98.53 97.67 100.00 K intron_retention CG6206,I_chr2L_10459281_10459879,I_chr2L_10459518_10459620,I_chr2L_10459518_10459661 chr2L + chr2L_10459281_10459383 chr2L_10459280_10459281;chr2L_10459383_10459384 chr2L_10459181_10459280;chr2L_10459384_10459458 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_donor CG17255,I_chrX_10366177_10366615,RI_chrX_10366177_10367270 chrX - chrX_10366177_10367360;chrX_10366177_10367201;chrX_10366177_10367458;chrX_10366177_10367270;chrX_10366177_10366615 chrX_10366177_10368085 chrX_10366077_10366176;chrX_10368086_10368118 80.88 78.46 83.12 75.21 78.85 81.25 76.60 75.21 76.43 83.61 81.36 78.81 75.00 78.82 80.81 71.57 78.38 80.33 75.76 78.23 81.48 86.89 72.00 83.53 80.00 82.42 82.19 81.36 87.25 82.14 81.18 88.14 82.70 72.13 80.88 82.81 79.73 83.93 79.37 83.59 85.29 77.85 74.24 80.56 89.09 86.75 84.38 83.12 75.00 88.89 79.27 71.05 85.29 85.71 80.37 80.56 81.82 86.32 K intron_retention CG17508,RI_chr2R_1496995_1497120,chr2R_1497138_1497448.0 chr2R + chr2R_1496995_1497637 chr2R_1496994_1496995;chr2R_1497637_1497638 chr2R_1496895_1496994;chr2R_1497638_1497761 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.41 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 98.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.62 100.00 100.00 100.00 96.43 100.00 100.00 100.00 96.67 K jcn_only_AA Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824086_11824525 chr2R_11824089_11824525 chr2R_11824526_11824611;chr2R_11823989_11824085 23.98 23.53 NA 20.43 NA NA NA 35.00 20.97 23.81 NA NA NA NA NA 23.08 NA NA NA 26.80 NA NA 24.14 28.57 13.04 NA 11.11 26.92 NA 28.00 27.27 32.14 30.43 NA 15.38 30.77 28.89 16.67 15.38 25.00 NA 21.05 NA 29.27 17.95 26.19 22.22 38.89 22.22 15.56 27.50 9.38 25.93 18.60 25.00 19.15 23.81 30.95 K cassette RI_chr4_1144958_1145393,CG11155,I_chr4_1152220_1152710,I_chr4_1152585_1152687 chr4 + chr4_1148042_1150060 chr4_1148042_1149114;chr4_1149282_1150060 chr4_1149115_1149281 chr4_1147628_1148041;chr4_1150061_1150067 83.33 NA NA 42.86 NA NA NA 85.71 69.23 NA NA 85.71 NA NA NA 88.89 NA NA NA 57.14 83.33 NA NA NA NA NA NA NA NA NA 85.71 NA NA 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA NA NA NA NA NA K intron_retention fws,CG6453 chr2L - chr2L_17480920_17480972 chr2L_17480919_17480920;chr2L_17480972_17480973 chr2L_17480825_17480919;chr2L_17480973_17481046 65.48 NA 66.67 69.57 54.55 80.00 53.33 60.00 64.10 NA 72.73 59.09 50.00 54.55 56.25 82.61 63.64 80.00 63.16 58.33 64.29 61.54 NA NA NA 71.43 NA 70.00 100.00 NA 66.67 88.89 63.64 56.52 NA 90.00 52.63 NA 50.00 71.43 NA 55.56 NA 66.67 NA NA NA 71.43 77.27 60.00 NA NA NA NA 90.91 NA 71.43 90.00 K intron_retention CG8312 chr3R + chr3R_5448140_5448194 chr3R_5448139_5448140;chr3R_5448194_5448195 chr3R_5448075_5448139;chr3R_5448195_5448263 0.00 0.00 0.00 5.00 0.00 6.25 3.12 2.86 4.41 0.00 0.00 6.56 7.14 NA 0.00 0.00 0.00 0.00 7.14 2.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.08 0.00 0.00 2.27 0.00 4.17 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 2.00 0.00 K intron_retention CG7720 chr3R - chr3R_14586877_14587323 chr3R_14586876_14586877;chr3R_14587323_14587324 chr3R_14586717_14586876;chr3R_14587324_14587459 42.11 NA NA 60.00 NA NA 53.85 42.11 43.75 NA NA 50.00 NA NA NA NA NA NA NA 64.71 NA 12.50 NA 41.67 NA NA NA NA NA NA 70.59 NA NA 50.00 NA NA NA NA NA 41.18 NA 47.06 NA 12.00 NA 35.71 NA 36.36 66.67 NA 31.25 NA NA NA 41.67 NA NA 6.67 K jcn_only_AA tho2 chr2L - chr2L_2139674_2139727 chr2L_2139677_2139727 chr2L_2139728_2140312;chr2L_2139630_2139673 54.55 53.49 44.64 50.52 61.90 64.71 52.88 52.75 55.10 44.12 50.00 61.47 59.52 47.69 43.24 50.51 52.94 53.97 59.15 62.22 45.28 48.15 52.34 59.09 53.85 45.83 45.28 65.96 66.67 55.22 60.94 57.14 49.57 43.97 54.17 55.10 61.61 53.73 56.78 49.48 53.12 51.05 59.42 55.56 53.33 64.79 58.82 64.41 59.63 53.85 64.71 62.07 58.33 59.77 56.76 57.41 54.55 50.91 K intron_retention CG15618 chrX - chrX_19758692_19758760 chrX_19758691_19758692;chrX_19758760_19758761 chrX_19757859_19758691;chrX_19758761_19759042 14.64 9.09 18.75 17.65 16.67 6.67 4.76 0.00 10.81 NA NA 12.50 NA 0.00 9.09 5.88 NA 19.05 NA 13.95 13.33 60.00 16.67 19.35 15.38 14.29 25.00 33.33 NA 10.53 33.33 NA 0.00 7.41 15.38 NA 18.37 17.39 15.22 22.73 NA 8.51 20.00 10.53 NA NA 17.65 NA 13.79 NA 13.79 17.65 10.53 NA 15.00 NA 0.00 15.38 K jcn_only_AA CG6230,I_chr2L_11117087_11117165 chr2L - chr2L_11117087_11117165 chr2L_11117107_11117165 chr2L_11117166_11117265;chr2L_11116987_11117086 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.06 100.00 100.00 100.00 100.00 99.54 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.00 100.00 100.00 100.00 100.00 99.46 99.32 100.00 99.74 99.56 100.00 98.58 100.00 100.00 100.00 100.00 99.39 100.00 100.00 99.24 99.39 100.00 100.00 100.00 100.00 99.19 99.37 100.00 100.00 100.00 100.00 99.27 100.00 99.67 K alternative_donor heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27691048_27691484 chr3R_27691048_27691472 chr3R_27690854_27691047;chr3R_27691485_27691758 83.33 77.78 78.57 77.78 90.00 80.00 NA 83.33 83.33 72.73 72.73 73.08 87.50 93.75 92.86 88.89 NA 93.33 70.00 80.00 100.00 77.78 90.00 71.43 90.91 76.47 86.96 87.50 90.91 90.00 88.89 66.67 83.33 87.50 76.92 70.59 86.36 92.31 79.17 29.17 90.00 77.78 90.91 75.00 92.31 88.89 85.71 90.91 85.71 70.83 94.12 76.92 80.95 69.23 94.44 81.82 71.43 82.35 K intron_retention CG30055,I_chr2R_8498227_8498492 chr2R + chr2R_8477845_8477943 chr2R_8477844_8477845;chr2R_8477943_8477944 chr2R_8476106_8477844;chr2R_8477944_8478270 0.00 NA NA 0.00 NA NA NA 12.00 5.56 NA NA 5.26 NA NA 0.00 6.90 NA NA NA 0.00 NA NA NA 14.29 0.00 NA 0.00 NA NA NA 0.00 NA NA 6.67 NA NA NA NA NA 15.79 NA 8.33 NA NA NA NA 0.00 NA 6.90 0.00 6.67 NA NA NA 0.00 0.00 0.00 NA K alternative_donor CG10737 chr2R + chr2R_15062592_15063692;chr2R_15062754_15063692 chr2R_15062814_15063692 chr2R_15063693_15063852;chr2R_15062387_15062591 68.99 67.18 72.80 62.11 70.00 76.36 68.89 65.14 68.02 56.92 64.08 76.06 76.00 69.70 66.67 81.89 68.27 73.73 71.93 76.87 76.40 61.94 63.84 68.46 70.00 74.53 60.16 40.45 58.49 70.87 82.19 67.48 72.19 73.45 72.28 75.42 61.33 60.66 62.50 80.09 69.47 75.90 81.11 67.65 71.15 72.49 68.99 67.00 72.03 61.17 67.80 63.22 68.85 73.73 74.82 68.31 66.19 65.56 K intron_retention RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522912_523414 chrX_522911_522912;chrX_523414_523415 chrX_522849_522911;chrX_523415_523436 17.07 19.44 12.07 5.19 17.31 17.31 67.15 8.06 22.84 26.53 10.00 16.67 34.15 17.07 17.07 20.90 17.24 12.82 9.52 15.72 11.54 28.46 44.12 39.13 64.41 50.00 28.26 15.85 13.19 13.64 10.42 9.39 3.30 7.50 20.00 18.42 49.09 44.12 47.62 5.26 18.80 10.08 15.15 4.57 6.09 13.93 29.41 5.48 10.83 35.71 39.39 44.44 10.88 26.79 8.33 31.67 18.25 5.35 N alternative_acceptor noncoding_14363 chr3LHet - chr3LHet_709113_709194;chr3LHet_709127_709194 chr3LHet_709103_709194 chr3LHet_709195_709261;chr3LHet_709044_709102 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 6.67 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 K intron_retention Syx5,fzy chr2L + chr2L_16306959_16307482 chr2L_16306958_16306959;chr2L_16307482_16307483 chr2L_16306941_16306958;chr2L_16307483_16307526 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 97.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 K intron_retention Pax,RI_chr2L_19401373_19409403,I_chr2L_19404678_19404749,RI_chr2L_19404683_19426205,RI_chr2L_19404823_19409403,I_chr2L_19411712_19414411,EI_chr2L_19411720_19414380,I_chr2L_19411720_19414407,I_chr2L_19419985_19423267,I_chr2L_19419985_19423278,I_chr2L_19419985_19423414,I_chr2L_19420081_19423267,I_chr2L_19420081_19423278 chr2L - chr2L_19404683_19409403 chr2L_19404682_19404683;chr2L_19409403_19409404 chr2L_19404583_19404682;chr2L_19409404_19409503 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG30118,I_chr2R_14320281_14325712,I_chr2R_14325118_14325712 chr2R - chr2R_14320281_14325079 chr2R_14320281_14324101;chr2R_14324234_14325079 chr2R_14324102_14324233 chr2R_14320181_14320280;chr2R_14325080_14325117 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 14.29 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 NA 0.00 6.67 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 4.17 NA 6.25 5.56 NA 3.23 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K intron_retention casp,EI_chr2R_11914764_11914841 chr2R - chr2R_11912640_11912695 chr2R_11912639_11912640;chr2R_11912695_11912696 chr2R_11912133_11912639;chr2R_11912696_11912776 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 2.90 3.64 11.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette bip2,RI_chr4_481674_482028,RI_chr4_481674_487126,RI_chr4_482358_482702,RI_chr4_483128_487126,RI_chr4_483144_483680,RI_chr4_486609_487126 chr4 - chr4_481674_487126 chr4_481674_482130;chr4_482955_483013;chr4_483128_483680;chr4_485367_485422;chr4_485855_487126 chr4_482131_482954;chr4_483014_483127;chr4_483681_485366;chr4_485423_485854 chr4_481574_481673;chr4_487127_487226 100.00 87.50 100.00 92.31 83.33 100.00 100.00 100.00 96.30 100.00 100.00 89.47 100.00 100.00 91.67 87.50 91.67 80.00 93.33 88.89 100.00 100.00 100.00 87.50 100.00 100.00 87.50 100.00 80.00 100.00 75.00 100.00 80.00 95.83 100.00 100.00 100.00 100.00 100.00 83.33 80.00 100.00 90.91 100.00 100.00 100.00 85.71 100.00 100.00 100.00 91.67 83.33 80.00 100.00 100.00 100.00 75.00 100.00 K intron_retention CG16940,I_chr3L_212740_212843,I_chr3L_212783_212843,noncoding_9585,Kaz1-ORFA_Kaz1-ORFB chr3L + chr3L_212308_212843 chr3L_212307_212308;chr3L_212843_212844 chr3L_212275_212307;chr3L_212844_212943 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 N alternative_acceptor trbl,I_chr3L_20390576_20390678 chr3L - chr3L_20390576_20393525 chr3L_20393312_20393525 chr3L_20393526_20394677;chr3L_20390476_20390575 12.50 9.09 10.00 17.86 6.67 8.33 19.05 10.71 11.90 14.29 12.50 13.16 25.00 21.43 8.33 20.00 15.38 11.11 14.29 15.00 9.52 14.89 8.51 8.82 20.00 15.38 16.13 27.78 23.08 13.33 8.33 14.29 22.22 11.11 17.65 14.29 5.88 6.90 8.11 10.53 16.67 16.00 10.53 7.50 12.50 13.64 11.76 16.67 10.81 9.52 11.76 10.53 10.53 9.09 10.53 6.67 12.50 15.00 K cassette CG31612,E_chr2L_21775447_21821182 chr2L - chr2L_21762900_21765962 chr2L_21762900_21763571;chr2L_21763727_21765962 chr2L_21763572_21763726 chr2L_21762314_21762899;chr2L_21765963_21766157 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 5.26 NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 6.67 NA 0.00 NA NA NA NA NA 7.69 NA K multi_cassette CG17471,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1216718_1217333 chr4_1216718_1216813;chr4_1216889_1216945;chr4_1217104_1217333 chr4_1216814_1216888;chr4_1216946_1217103 chr4_1216618_1216717;chr4_1217334_1217351 85.71 100.00 85.71 73.33 100.00 80.00 92.31 88.24 82.61 NA NA 61.11 100.00 90.00 80.00 85.00 100.00 80.00 90.00 100.00 100.00 NA 83.33 75.00 NA NA 80.00 NA NA 100.00 87.50 NA NA 100.00 85.71 NA NA NA NA 85.71 83.33 100.00 87.50 75.00 NA 85.71 NA 80.00 76.47 80.00 100.00 80.00 NA NA 85.71 80.00 80.00 80.00 K alternative_acceptor CG2219,I_chr4_199813_199889,RI_chr4_202143_202194 chr4 - chr4_199838_199889;chr4_199813_199889 chr4_199822_199889 chr4_199890_199942;chr4_199758_199812 6.67 3.45 10.00 12.24 0.00 0.00 10.00 4.35 5.08 14.29 0.00 8.00 6.25 10.34 0.00 7.46 11.54 12.50 9.09 6.98 7.69 14.29 2.70 3.45 5.26 11.11 5.13 5.88 7.69 0.00 5.71 8.00 14.29 13.73 9.52 5.00 6.67 10.53 5.88 5.71 11.11 9.52 15.62 4.35 14.29 5.71 0.00 5.26 10.00 9.38 8.11 6.25 0.00 10.53 3.70 4.55 3.23 6.06 K intron_retention CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789616_9789790 chr2L_9789615_9789616;chr2L_9789790_9789791 chr2L_9789594_9789615;chr2L_9789791_9789832 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.70 0.52 0.00 0.00 1.12 0.00 1.41 0.00 0.40 0.78 0.73 0.61 0.51 0.00 0.00 0.00 0.00 0.00 0.00 3.09 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.79 0.00 0.00 0.59 0.00 0.00 1.69 0.00 1.52 0.00 0.00 0.00 0.46 0.00 1.91 2.04 0.00 0.00 1.04 0.99 0.00 0.50 K intron_retention CG17331,RI_chr2L_16731891_16731942 chr2L - chr2L_16731869_16731942 chr2L_16731868_16731869;chr2L_16731942_16731943 chr2L_16731791_16731868;chr2L_16731943_16732042 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17002 chr2R + chr2R_2875771_2876075 chr2R_2875770_2875771;chr2R_2876075_2876076 chr2R_2875292_2875770;chr2R_2876076_2876429 0.00 0.00 0.00 6.67 0.00 0.00 2.86 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 K alternative_acceptor CG17715,RI_chr2L_22742106_22742215,I_chr2L_22742106_22746918 chr2L + chr2L_22742106_22742215 chr2L_22742106_22742160 chr2L_22742093_22742105;chr2L_22742216_22742315 100.00 100.00 98.73 98.99 98.04 98.08 100.00 100.00 100.00 100.00 100.00 99.01 100.00 100.00 98.72 100.00 98.00 100.00 100.00 100.00 100.00 100.00 98.44 100.00 100.00 100.00 98.25 100.00 97.44 98.48 99.04 100.00 100.00 100.00 100.00 100.00 97.73 100.00 98.04 100.00 100.00 99.22 100.00 100.00 100.00 99.02 100.00 99.10 100.00 98.33 100.00 97.44 100.00 95.00 100.00 97.78 100.00 100.00 K intron_retention F_chrX_15764251_15765393,CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15764522_15765393 chrX_15764521_15764522;chrX_15765393_15765394 chrX_15764487_15764521;chrX_15765394_15765493 31.25 NA NA 33.33 NA NA 36.36 25.00 33.33 NA NA NA 27.27 NA NA 21.05 NA NA NA 31.25 NA NA NA NA NA NA NA NA NA NA NA NA NA 23.53 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA 41.67 46.67 NA NA NA NA NA NA NA NA NA K alternative_donor scra,EI_chr2R_3480349_3480405 chr2R + chr2R_3480833_3480922 chr2R_3480866_3480922 chr2R_3480923_3481286;chr2R_3480644_3480832 99.23 99.16 100.00 100.00 100.00 98.57 100.00 99.13 100.00 98.08 98.53 99.35 100.00 100.00 98.86 100.00 98.57 100.00 98.77 99.52 98.44 100.00 100.00 100.00 98.92 98.67 100.00 100.00 98.65 98.98 98.08 98.48 98.48 99.20 100.00 100.00 98.40 100.00 99.43 99.23 97.73 99.43 98.44 98.84 98.96 100.00 99.11 100.00 99.36 99.14 100.00 98.78 100.00 100.00 98.72 98.11 98.77 100.00 K jcn_only_AA CG6912 chr3R - chr3R_10962499_10962563 chr3R_10962502_10962563 chr3R_10962564_10962631;chr3R_10962433_10962498 92.54 93.28 90.96 93.01 94.20 90.96 90.97 93.26 91.12 89.29 94.55 91.88 93.07 93.29 91.11 97.05 92.21 93.85 89.87 91.19 94.35 86.67 93.07 88.19 97.56 94.92 92.64 91.57 93.48 92.00 94.90 93.50 91.06 94.63 97.87 94.52 93.00 94.74 93.33 93.53 90.16 91.16 90.62 92.44 84.68 94.41 92.20 86.41 94.43 NA 88.48 96.08 95.41 90.51 90.82 91.74 89.09 82.52 K intron_retention step chr2L - chr2L_21741736_21741794 chr2L_21741735_21741736;chr2L_21741794_21741795 chr2L_21741221_21741735;chr2L_21741795_21741932 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 1.62 0.00 0.00 1.69 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor Moca-cyp chr3R + chr3R_24167182_24167348;chr3R_24167182_24167906;chr3R_24167182_24167243;chr3R_24167182_24167260 chr3R_24167182_24167249 chr3R_24167094_24167181;chr3R_24167907_24167936 5.26 4.76 5.88 9.62 8.70 5.41 7.69 6.56 5.56 3.85 11.76 4.84 7.14 6.90 5.26 5.26 10.34 8.33 8.33 5.26 9.09 3.92 4.23 3.85 6.45 5.00 3.45 6.25 4.35 5.56 9.23 2.08 1.65 7.94 4.26 4.26 3.08 4.65 3.23 4.55 3.92 5.56 10.00 4.84 1.92 3.45 4.35 10.78 5.80 4.88 4.76 5.71 6.06 6.06 7.69 4.26 4.55 14.86 K jcn_only_AD RpS8,REI_chr3R_25687741_25687920,I_chr3R_25687817_25687920,F_chr3R_25696884_25696960 chr3R + chr3R_25687657_25687920 chr3R_25687741_25687920 chr3R_25687921_25688020;chr3R_25687646_25687656 0.45 0.48 0.10 0.08 0.05 0.17 0.03 0.08 0.10 0.38 0.12 0.07 0.04 0.16 0.07 0.29 0.11 0.06 0.10 0.10 0.17 0.78 1.38 1.26 0.79 0.10 0.45 0.71 2.88 0.99 1.51 0.48 0.75 0.07 0.96 1.41 0.23 1.01 0.78 1.25 0.35 0.09 0.08 0.48 0.17 1.43 0.93 1.09 0.14 0.54 2.52 0.51 0.67 1.50 0.07 1.13 0.51 0.61 K intron_retention CG9154 chr2L - chr2L_6070393_6070448 chr2L_6070392_6070393;chr2L_6070448_6070449 chr2L_6070233_6070392;chr2L_6070449_6070669 23.53 20.00 14.81 31.25 18.75 13.64 22.22 23.68 21.57 30.77 28.57 21.43 NA 26.32 18.18 20.00 23.53 17.65 16.67 16.67 35.71 26.32 41.67 26.32 63.64 28.57 29.17 NA 40.00 20.00 72.55 19.44 12.50 28.00 26.32 40.00 22.86 23.81 26.92 25.71 36.36 18.18 13.33 22.22 15.38 24.24 19.05 23.53 20.93 50.00 23.08 41.67 19.35 36.84 20.00 36.36 14.58 10.47 K cassette CG7185 chr3L - chr3L_8305851_8307056 chr3L_8305851_8306110;chr3L_8306252_8307056 chr3L_8306111_8306251 chr3L_8305384_8305850;chr3L_8307057_8307776 46.29 43.45 46.03 32.14 30.56 31.34 22.22 38.46 46.71 54.95 47.14 39.56 27.12 43.28 46.32 58.54 50.00 45.24 38.57 40.88 42.86 53.09 56.52 49.10 33.33 34.94 43.70 43.12 48.75 47.41 45.33 57.30 52.23 44.74 44.68 28.47 54.46 50.00 46.29 55.21 32.65 42.23 42.86 60.22 49.75 50.66 53.21 51.35 43.37 42.05 47.89 48.24 52.08 50.00 39.64 48.39 46.71 46.94 K intron_retention Su(var)2-10,RI_chr2R_5006333_5006392 chr2R + chr2R_5006553_5007257 chr2R_5006552_5006553;chr2R_5007257_5007258 chr2R_5006405_5006552;chr2R_5007258_5007336 100.00 100.00 95.45 100.00 100.00 100.00 100.00 96.43 97.92 100.00 92.59 100.00 100.00 100.00 100.00 96.77 100.00 100.00 95.45 96.67 95.24 100.00 100.00 91.67 100.00 100.00 95.45 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 95.83 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 94.74 100.00 89.47 100.00 93.75 95.65 93.75 100.00 95.83 K alternative_acceptor I_chr2R_7479681_7491857,Egm,I_chr2R_7504956_7505020 chr2R - chr2R_7504956_7505020 chr2R_7504960_7505020 chr2R_7505021_7505120;chr2R_7504856_7504955 96.88 96.00 100.00 100.00 100.00 94.12 96.00 96.00 100.00 100.00 92.86 96.88 100.00 94.44 100.00 94.74 100.00 100.00 100.00 97.78 100.00 96.30 100.00 95.12 94.74 95.24 96.97 96.55 100.00 100.00 89.66 94.74 90.00 100.00 95.45 95.24 97.37 96.77 96.15 97.22 90.00 96.43 100.00 100.00 96.88 97.06 100.00 96.30 100.00 96.43 93.75 94.74 96.15 96.67 100.00 96.43 100.00 97.14 K intron_retention CREI_chr2L_9938511_9938564,CG5853,RI_chr2L_9942818_9944294,I_chr2L_9944682_9947179 chr2L - chr2L_9941640_9941699 chr2L_9941639_9941640;chr2L_9941699_9941700 chr2L_9941539_9941639;chr2L_9941700_9942110 4.88 8.20 3.57 5.41 0.00 0.00 5.26 3.88 5.30 6.82 4.88 8.24 3.33 1.72 6.67 14.71 7.89 4.88 5.41 4.97 3.51 2.35 8.14 0.00 0.00 0.00 6.25 5.56 2.99 14.04 7.25 11.63 11.76 3.92 4.44 7.81 4.88 4.08 5.41 14.77 3.64 2.34 10.81 2.44 6.38 6.74 3.66 12.12 5.08 3.77 4.23 0.00 0.00 2.13 0.00 6.67 0.00 10.13 N alternative_acceptor RpL13A,I_chr3R_1450243_1451235,EI_chr3R_1450853_1451054,snoRNA:Me28S-U2134b chr3R + chr3R_1450853_1451235;chr3R_1450853_1451134 chr3R_1450853_1451054 chr3R_1450753_1450852;chr3R_1451236_1451335 0.07 0.07 0.05 0.06 0.07 0.06 0.18 0.06 0.05 0.08 0.06 0.05 0.08 0.09 0.06 0.12 0.06 0.03 0.06 0.07 0.08 0.04 0.09 0.09 0.16 0.07 0.11 0.40 0.13 0.05 0.10 0.05 0.04 0.05 0.08 0.17 0.05 0.05 0.04 0.09 0.13 0.06 0.05 0.08 0.03 0.08 0.06 0.07 0.11 0.09 0.10 0.09 0.08 0.09 0.05 0.06 0.07 0.07 K intron_retention AnnIX chr3R + chr3R_16891033_16893167 chr3R_16891032_16891033;chr3R_16893167_16893168 chr3R_16891012_16891032;chr3R_16893168_16893221 23.08 23.40 15.38 23.08 27.27 17.74 40.40 19.33 29.60 28.57 43.33 15.08 27.08 18.33 14.63 20.91 26.42 10.94 16.88 16.95 23.46 31.08 28.79 17.54 14.58 18.75 21.05 33.33 33.33 42.11 15.48 10.00 NA 19.47 20.00 28.12 50.00 23.81 6.76 24.32 NA 18.49 23.40 53.85 9.68 19.61 20.31 NA 20.47 29.79 24.00 38.78 32.00 11.54 23.44 24.00 16.67 NA K intron_retention CG3662,I_chr2L_822032_822857 chr2L + chr2L_823570_823636 chr2L_823569_823570;chr2L_823636_823637 chr2L_822858_823569;chr2L_823637_824137 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 1.39 0.00 1.23 2.96 1.28 0.00 0.00 0.00 0.00 0.00 1.56 0.99 0.68 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 K intron_retention Cf2 chr2L - chr2L_4880473_4881214 chr2L_4880472_4880473;chr2L_4881214_4881215 chr2L_4880378_4880472;chr2L_4881215_4882365 15.38 7.69 18.75 6.90 10.53 0.00 33.33 18.52 18.18 0.00 11.76 14.29 31.82 NA 13.79 10.00 NA NA 15.38 16.33 12.00 22.50 16.67 18.52 15.38 0.00 20.59 16.67 17.65 15.00 17.65 7.14 11.11 19.35 6.25 4.76 7.14 21.05 16.22 39.58 NA 19.05 16.67 18.18 0.00 NA 5.88 10.53 16.33 16.67 15.38 9.52 10.53 NA 15.79 6.67 8.33 21.05 K intron_retention CG6762,I_chrX_17751392_17751499,I_chrX_17751392_17751520 chrX + chrX_17751392_17751505 chrX_17751391_17751392;chrX_17751505_17751506 chrX_17751292_17751391;chrX_17751506_17751524 33.33 NA 36.36 50.00 NA 36.36 50.00 21.43 20.83 NA NA 50.00 NA NA NA 38.46 NA NA NA 33.33 NA 35.71 25.00 27.78 NA 25.00 50.00 25.00 40.00 NA 50.00 23.08 50.00 38.46 NA NA 26.32 NA 29.41 20.83 25.00 45.00 NA 23.08 41.67 30.00 38.46 35.71 40.00 33.33 NA NA 12.50 31.58 NA 28.57 30.00 25.00 K intron_retention CG8839,I_chr2R_8229288_8231538 chr2R - chr2R_8228935_8228992 chr2R_8228934_8228935;chr2R_8228992_8228993 chr2R_8228715_8228934;chr2R_8228993_8229287 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD cno,I_chr3R_999718_999986,I_chr3R_999737_999777 chr3R - chr3R_1002013_1003015 chr3R_1002013_1002087 chr3R_999987_1002012;chr3R_1003016_1003115 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.06 0.00 0.00 0.00 0.00 0.00 0.00 11.93 0.00 0.00 0.00 9.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG6116,I_chr2L_13291292_13292541 chr2L + chr2L_13288628_13288716 chr2L_13288628_13288679 chr2L_13288559_13288627;chr2L_13288717_13288781 97.30 100.00 96.67 97.83 100.00 95.83 97.50 97.37 98.00 100.00 94.74 97.30 94.74 100.00 95.65 97.37 100.00 95.00 96.55 95.74 95.83 96.67 96.15 100.00 94.44 96.15 100.00 100.00 100.00 100.00 100.00 90.48 96.15 97.37 100.00 93.33 94.74 100.00 100.00 96.97 93.75 97.78 100.00 94.74 100.00 100.00 95.24 100.00 100.00 96.67 92.86 94.74 100.00 94.12 96.67 95.24 100.00 95.83 K intron_retention woc,I_chr3R_23089174_23089695,I_chr3R_23096096_23096561 chr3R - chr3R_23083561_23083618 chr3R_23083560_23083561;chr3R_23083618_23083619 chr3R_23083431_23083560;chr3R_23083619_23083740 0.00 0.00 0.00 0.00 0.00 0.00 3.00 1.45 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.88 0.00 0.00 2.15 0.52 0.00 0.00 1.65 0.00 2.67 7.37 2.48 2.06 4.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.71 0.00 0.00 0.93 2.63 1.16 0.00 0.00 0.00 0.00 0.00 0.00 1.35 0.00 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Atg7 chr2R - chr2R_14511633_14512267 chr2R_14511633_14511689;chr2R_14512212_14512267 chr2R_14511690_14512211 chr2R_14511420_14511632;chr2R_14512268_14512470 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 K intron_retention TepII,I_chr2L_7696207_7698724,I_chr2L_7697158_7697976,I_chr2L_7697582_7697976 chr2L - chr2L_7697582_7698724 chr2L_7697581_7697582;chr2L_7698724_7698725 chr2L_7697482_7697581;chr2L_7698725_7698824 0.00 0.00 3.45 3.51 NA 0.00 1.96 3.51 3.03 NA 0.00 2.25 0.00 0.00 0.00 2.56 0.00 6.67 6.06 0.00 7.69 2.38 0.00 0.00 0.00 0.00 3.33 12.50 0.00 6.25 2.50 0.00 0.00 7.55 0.00 7.14 6.25 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.06 0.00 0.00 NA 0.00 NA 0.00 0.00 K alternative_donor R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8088371_8089184;chr2L_8088517_8089184 chr2L_8088454_8089184 chr2L_8089185_8089284;chr2L_8088362_8088370 85.71 NA 81.82 66.67 NA NA 76.92 84.62 85.71 NA NA 93.75 81.82 80.00 100.00 85.71 NA 83.33 83.33 91.67 83.33 NA 85.71 NA 83.33 85.71 NA NA NA NA 90.00 NA 71.43 80.00 100.00 85.71 NA NA NA 100.00 83.33 87.50 77.78 83.33 NA 100.00 NA NA 92.31 NA 100.00 NA 100.00 NA 87.50 85.71 NA NA K alternative_donor l(2)tid chr2R + chr2R_19595998_19596157 chr2R_19596011_19596157 chr2R_19596158_19596758;chr2R_19594625_19595997 65.94 56.25 NA NA 62.50 77.78 77.78 70.00 91.67 62.50 NA 62.50 NA 85.71 87.50 NA NA 77.78 NA 80.00 NA 66.67 64.29 60.87 50.00 NA 36.36 64.29 80.00 80.00 75.00 69.23 66.67 66.67 36.36 81.82 76.47 66.67 65.00 70.59 64.29 65.22 NA 64.29 60.87 56.52 65.00 60.00 75.00 72.73 63.64 NA 60.00 37.50 55.56 63.64 68.18 68.42 K intron_retention CG5525,CG5780 chr2L - chr2L_12690556_12690618 chr2L_12690555_12690556;chr2L_12690618_12690619 chr2L_12690476_12690555;chr2L_12690619_12690687 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.18 0.29 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.45 0.40 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.33 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG3632,RI_chrX_16195880_16196242 chrX + chrX_16190824_16191693;chrX_16190917_16191693 chrX_16190941_16191693 chrX_16191694_16191751;chrX_16190763_16190823 24.14 NA NA 10.00 NA 26.09 24.14 12.12 25.00 NA NA 15.91 NA NA 16.00 16.67 NA NA 21.74 28.21 NA NA 20.69 27.27 NA 40.91 NA NA NA NA 12.50 NA NA 35.90 38.10 NA 17.39 NA NA 25.00 NA 26.53 NA NA NA NA NA NA 28.95 NA 20.00 4.76 NA NA 30.43 NA NA NA K alternative_donor Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654157,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15652363_15654272;chrX_15652363_15654157 chrX_15652363_15654499 chrX_15652357_15652362;chrX_15654500_15654599 7.69 NA 0.00 8.33 NA 20.00 0.00 0.00 20.00 NA NA 9.09 33.33 0.00 0.00 7.14 NA 0.00 0.00 9.09 0.00 20.00 20.00 NA 0.00 0.00 25.00 NA 25.00 NA 16.67 NA 0.00 17.65 0.00 16.67 NA NA 0.00 0.00 NA 7.69 25.00 NA NA NA NA 25.00 7.69 NA 0.00 NA NA NA 28.57 NA NA 0.00 K jcn_only_AD Fur2,RI_chrX_16267905_16268958,I_chrX_16270205_16270272,I_chrX_16274795_16274867 chrX + chrX_16270374_16270685 chrX_16270383_16270685 chrX_16270686_16270820;chrX_16270273_16270373 24.09 21.51 32.93 25.93 27.17 15.58 23.33 24.09 24.78 35.29 34.57 22.96 15.79 26.51 32.00 23.66 30.86 22.08 33.77 21.62 35.06 15.56 23.81 29.27 27.78 32.56 31.17 22.37 15.25 22.68 36.99 39.47 26.19 27.14 20.37 22.67 24.22 20.62 22.77 12.96 31.25 21.29 25.00 22.14 33.33 31.37 15.79 17.95 23.90 25.40 25.44 16.98 21.43 32.43 14.43 23.08 31.75 20.00 K jcn_only_AD CG42258,I_chrX_12359522_12362282 chrX + chrX_12365942_12369672 chrX_12365968_12369672 chrX_12369673_12369873;chrX_12365863_12365941 0.00 NA NA NA NA NA NA 0.00 3.70 NA NA 0.00 NA NA NA 0.00 NA NA NA 4.55 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 4.55 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention vlc chr2R + chr2R_1589693_1590371 chr2R_1589692_1589693;chr2R_1590371_1590372 chr2R_1589612_1589692;chr2R_1590372_1590451 90.81 88.24 85.71 90.00 100.00 80.00 93.55 92.31 91.67 NA 94.12 90.70 95.00 90.91 86.67 97.50 90.91 92.00 93.33 100.00 100.00 90.00 84.21 94.12 90.00 87.50 75.00 NA NA 91.67 85.19 NA 90.00 89.58 100.00 NA 87.50 80.00 100.00 95.00 NA 86.36 86.36 73.33 NA 87.50 100.00 88.89 88.89 90.91 94.44 92.31 NA NA 93.55 92.31 75.00 87.50 K intron_retention CG5805 chr3R - chr3R_20612625_20613016 chr3R_20612624_20612625;chr3R_20613016_20613017 chr3R_20611695_20612624;chr3R_20613017_20613134 0.00 0.00 0.00 3.39 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 0.00 0.00 0.00 0.00 4.44 0.00 0.00 5.71 0.00 0.00 2.56 0.00 0.00 0.00 2.94 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 K intron_retention milt,I_chr2L_7038283_7040472,I_chr2L_7038944_7040472,I_chr2L_7051093_7051366 chr2L + chr2L_7038279_7040472 chr2L_7038278_7038279;chr2L_7040472_7040473 chr2L_7038273_7038278;chr2L_7040473_7040572 4.01 0.00 NA 2.94 0.00 0.00 0.00 3.23 4.76 NA 8.33 5.71 0.00 4.17 7.41 4.88 NA 5.56 8.00 6.25 NA 8.70 3.45 0.00 0.00 14.29 13.64 16.67 9.68 0.00 0.00 NA 6.25 4.65 NA 0.00 0.00 0.00 NA 5.13 0.00 3.23 10.00 9.09 NA 0.00 NA 0.00 4.65 NA 3.85 NA NA NA 7.14 NA NA 0.00 K intron_retention Ect4,I_chr3L_8075556_8086158,C_chr3L_8091754_8101552,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8092637_8095992 chr3L_8092636_8092637;chr3L_8095992_8095993 chr3L_8092246_8092636;chr3L_8095993_8097918 0.00 0.00 0.00 3.63 0.00 0.00 0.75 1.08 0.45 0.87 0.00 0.50 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 1.33 0.00 0.00 1.87 0.00 0.81 2.98 0.00 0.93 0.74 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.97 0.00 1.32 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.31 K intron_retention SCAR chr2L + chr2L_10981113_10981178 chr2L_10981112_10981113;chr2L_10981178_10981179 chr2L_10980445_10981112;chr2L_10981179_10981428 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 2.94 0.00 0.00 0.00 0.00 0.00 1.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911865_5913354;chr2R_5911708_5913354;chr2R_5911755_5913354 chr2R_5911803_5913354 chr2R_5913355_5913433;chr2R_5911703_5911707 37.98 NA 48.15 NA 28.57 NA NA 36.59 42.55 NA NA 61.29 NA 35.00 NA 32.00 38.46 NA 48.15 37.50 57.14 NA 39.13 NA NA NA NA NA NA 35.00 40.00 NA NA 32.43 NA NA NA NA NA 34.48 NA 39.47 NA 29.03 NA NA NA NA 47.22 NA NA NA NA NA 35.48 NA NA NA K intron_retention noncoding_22284 chrX - chrX_6652987_6653457 chrX_6652986_6652987;chrX_6653457_6653458 chrX_6652684_6652986;chrX_6653458_6653519 91.05 91.67 85.00 100.00 92.31 90.00 87.50 90.48 93.62 100.00 80.00 82.93 73.68 88.89 84.00 97.44 94.74 87.50 91.18 85.71 80.95 100.00 91.67 93.33 78.57 95.65 100.00 NA 100.00 NA 86.21 91.67 93.33 97.44 90.00 NA 91.67 77.78 83.33 83.33 90.91 84.44 88.89 78.57 95.24 94.44 100.00 100.00 88.24 100.00 100.00 91.67 88.89 80.00 84.00 94.44 86.67 92.86 K cassette Dab chr3L + chr3L_16709938_16711121;chr3L_16709938_16711346 chr3L_16709938_16710706;chr3L_16710941_16711346,chr3L_16710941_16711121 chr3L_16710707_16710940 chr3L_16709331_16709937;chr3L_16711347_16714116 14.29 NA NA 13.04 11.76 NA 16.67 18.18 10.00 5.88 10.00 17.24 NA 9.09 NA 14.29 12.50 25.00 11.11 13.16 13.33 26.47 7.69 10.71 11.11 20.00 12.50 19.05 16.67 25.00 NA 37.50 15.38 22.73 7.69 18.18 10.34 8.33 8.00 14.81 NA 13.95 20.00 26.32 NA 18.18 NA 29.17 15.38 NA 14.29 16.67 14.29 NA 20.00 NA 7.69 25.00 K intron_retention I_chr3L_2589746_2592161,CG16986 chr3L + chr3L_2600960_2601020 chr3L_2600959_2600960;chr3L_2601020_2601021 chr3L_2600822_2600959;chr3L_2601021_2601417 0.00 0.00 0.00 32.14 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 NA 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20334199_20334626 chr2L_20334199_20334620 chr2L_20334099_20334198;chr2L_20334627_20334726 100.00 100.00 98.69 99.31 98.67 99.13 100.00 99.38 99.56 100.00 98.89 99.47 100.00 100.00 100.00 100.00 100.00 98.95 99.02 99.25 100.00 99.79 99.42 100.00 100.00 100.00 98.45 95.10 99.52 99.55 100.00 99.29 99.77 99.47 100.00 98.89 100.00 100.00 100.00 99.44 98.77 100.00 100.00 98.84 99.57 98.64 100.00 99.42 100.00 99.28 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention mura,I_chr3R_5373093_5376618,RI_chr3R_5373093_5377292,CR42549,noncoding_15610,I_chr3R_5375533_5376618,RI_chr3R_5380786_5380850 chr3R - chr3R_5375533_5377487 chr3R_5375532_5375533;chr3R_5377487_5377488 chr3R_5375500_5375532;chr3R_5377488_5377520 6.06 NA NA 12.50 NA NA 16.67 7.41 2.94 NA NA 18.75 5.56 NA 14.29 NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 5.88 NA NA 0.00 NA NA 0.00 NA 8.33 NA 0.00 NA NA NA NA 13.04 11.76 NA NA NA NA 6.25 0.00 NA NA K intron_retention noncoding_5243,I_chr2R_4553376_4563976,l(2)44DEa,I_chr2R_4553577_4562151,I_chr2R_4553817_4565934,I_chr2R_4554300_4563976,I_chr2R_4559579_4559675,CG30354,I_chr2R_4565692_4565934 chr2R + chr2R_4553817_4562151 chr2R_4553816_4553817;chr2R_4562151_4562152 chr2R_4553717_4553816;chr2R_4562152_4562251 6.63 5.26 3.39 5.62 16.67 5.26 14.29 5.15 6.45 NA 12.50 7.63 11.43 8.82 4.65 4.73 5.00 8.33 6.25 8.24 15.38 8.11 12.50 10.00 9.52 3.92 9.84 5.56 16.00 0.00 4.44 NA 7.14 5.97 8.51 10.87 NA NA NA 2.63 0.00 6.82 3.92 12.50 NA 8.00 0.00 3.92 7.20 NA 10.42 0.00 0.00 NA 4.62 12.50 NA 0.00 K jcn_only_AD CG11360,noncoding_20761,I_chr4_701221_705206,I_chr4_705000_705206 chr4 + chr4_701762_705206 chr4_705000_705206 chr4_705207_705306;chr4_701667_701761 6.45 3.23 6.12 4.35 0.00 5.71 1.72 6.67 6.12 NA 11.11 9.09 25.00 10.81 11.11 12.50 0.00 9.30 4.65 7.25 5.77 10.81 6.67 0.00 NA 9.09 7.69 NA NA NA 2.27 NA NA 1.49 6.67 NA 9.52 6.67 9.68 4.41 NA 6.59 0.00 4.88 NA NA NA 6.45 8.47 NA 5.88 4.35 NA NA 1.56 NA NA NA K multi_cassette heph,I_chr3R_27699822_27771343,I_chr3R_27707594_27801169,RI_chr3R_27761114_27762991,RI_chr3R_27795508_27798223,RI_chr3R_27798276_27801169,I_chr3R_27801288_27801596 chr3R - chr3R_27707594_27801169 chr3R_27707594_27747354;chr3R_27747397_27757793;chr3R_27758337_27784756;chr3R_27784850_27795477;chr3R_27795508_27801169 chr3R_27747355_27747396;chr3R_27757794_27758336;chr3R_27784757_27784849;chr3R_27795478_27795507 chr3R_27707494_27707593;chr3R_27801170_27801219 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA 75.00 NA 100.00 100.00 100.00 NA NA NA 66.67 NA NA NA NA NA NA NA NA NA 100.00 NA NA 50.00 100.00 NA NA NA NA NA 100.00 NA 66.67 NA 66.67 NA NA NA NA 50.00 NA NA NA NA NA NA NA NA 66.67 N alternative_donor Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11835112_11835668;chr2R_11835112_11835509 chr2R_11835112_11835624 chr2R_11834432_11835111;chr2R_11835669_11836215 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 K intron_retention CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8184394_8184814 chr2L_8184393_8184394;chr2L_8184814_8184815 chr2L_8184136_8184393;chr2L_8184815_8184825 64.04 63.39 53.45 56.50 60.26 61.18 70.52 60.98 67.03 68.29 63.16 51.65 80.39 64.04 59.43 67.11 62.38 64.77 58.47 56.91 64.29 45.51 67.83 81.20 70.83 60.61 69.42 73.68 60.95 54.81 68.37 67.16 44.44 54.17 61.18 59.77 70.25 70.45 74.24 50.36 72.97 56.39 63.86 62.73 66.23 71.96 87.38 36.00 58.48 91.04 69.63 64.18 65.45 87.69 61.68 80.37 85.04 51.56 K alternative_acceptor CG11155,I_chr4_1152220_1152710,I_chr4_1152585_1152687 chr4 + chr4_1156111_1156206 chr4_1156111_1156164 chr4_1155985_1156110;chr4_1156207_1156239 100.00 NA NA NA NA NA 100.00 100.00 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG4793 chr2L + chr2L_15923620_15923680 chr2L_15923619_15923620;chr2L_15923680_15923681 chr2L_15923381_15923619;chr2L_15923681_15926231 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG7224 chr2L + chr2L_7999176_7999248;chr2L_7999170_7999248;chr2L_7999174_7999248 chr2L_7999168_7999248 chr2L_7999249_7999714;chr2L_7998934_7999167 99.05 100.00 97.92 94.74 100.00 100.00 100.00 98.00 99.05 100.00 100.00 98.61 97.56 96.43 97.78 100.00 100.00 97.37 100.00 100.00 97.78 100.00 98.18 100.00 97.96 100.00 95.92 95.35 95.89 100.00 97.67 100.00 99.00 100.00 100.00 98.31 100.00 100.00 96.84 97.06 96.00 100.00 100.00 96.43 97.01 100.00 100.00 98.39 99.03 98.25 100.00 100.00 97.22 100.00 100.00 97.73 100.00 97.85 K intron_retention Pde8,I_chr2R_19563512_19564565 chr2R + chr2R_19546851_19547916 chr2R_19546850_19546851;chr2R_19547916_19547917 chr2R_19546810_19546850;chr2R_19547917_19547942 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 96.55 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 96.77 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA K intron_retention CoRest,I_chrX_19416977_19417035 chrX + chrX_19416669_19417035 chrX_19416668_19416669;chrX_19417035_19417036 chrX_19416605_19416668;chrX_19417036_19417135 17.95 20.83 21.43 25.00 25.00 NA 23.53 16.67 24.44 14.29 15.00 33.33 NA 22.22 25.00 20.00 NA 26.32 6.67 30.56 26.67 32.35 22.22 19.35 15.38 21.05 11.76 14.29 6.06 12.50 29.41 5.00 13.89 15.38 19.23 2.86 10.00 23.33 14.29 15.62 13.33 26.19 36.36 11.76 26.67 13.04 0.00 23.08 22.58 16.67 13.79 12.50 5.56 13.64 21.74 16.00 6.67 21.43 K intron_retention CG14464,noncoding_4432 chr2R + chr2R_716999_717051 chr2R_716998_716999;chr2R_717051_717052 chr2R_716788_716998;chr2R_717052_718092 0.00 0.00 0.00 1.96 0.00 0.00 0.94 0.00 0.00 0.00 1.89 0.00 0.00 1.59 0.00 1.42 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 1.89 7.69 6.67 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 1.44 0.00 0.00 0.00 0.00 1.92 0.00 0.00 2.60 0.00 K intron_retention KrT95D,I_chr3R_19825840_19825904 chr3R - chr3R_19839351_19856215 chr3R_19839350_19839351;chr3R_19856215_19856216 chr3R_19839018_19839350;chr3R_19856216_19856580 0.00 0.00 0.00 1.35 0.00 0.00 3.39 4.11 3.60 0.00 0.00 0.00 0.00 4.44 0.00 1.82 4.08 0.00 0.00 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 1.72 2.38 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 4.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention osa chr3R - chr3R_13521036_13521644 chr3R_13521035_13521036;chr3R_13521644_13521645 chr3R_13520968_13521035;chr3R_13521645_13521833 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor GXIVsPLA2,I_chr3L_15948429_15948487,I_chr3L_15950680_15950738 chr3L + chr3L_15948410_15948487;chr3L_15948415_15948487 chr3L_15948429_15948487 chr3L_15948488_15948587;chr3L_15948329_15948409 7.69 NA 11.11 7.69 NA NA 7.69 NA NA NA NA 13.33 NA NA 9.09 7.14 NA NA NA 14.29 9.09 NA NA NA NA NA NA NA NA NA 7.41 NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA 5.26 NA NA NA NA NA NA NA NA NA K jcn_only_AA CG7766,I_chrX_8993495_8994545,I_chrX_8991338_8991387 chrX - chrX_8989685_8990798 chrX_8990009_8990798 chrX_8990799_8990858;chrX_8989428_8989684 8.51 9.09 5.00 20.00 NA 3.85 0.00 2.17 8.77 6.45 NA 4.44 0.00 8.33 2.78 15.15 NA 15.56 NA 9.76 0.00 25.00 10.26 6.82 8.57 NA 4.88 9.52 NA 16.67 8.51 11.54 8.33 7.32 10.53 14.29 14.29 6.45 14.63 11.49 7.69 18.75 4.76 12.50 5.36 4.92 6.67 6.67 14.63 1.82 4.65 23.33 12.50 15.62 9.09 0.00 2.38 11.54 K jcn_only_AA baf,I_chr2L_8029734_8029787 chr2L + chr2L_8029734_8029815 chr2L_8029734_8029787 chr2L_8029634_8029733;chr2L_8029816_8029887 0.10 0.00 0.15 0.21 0.00 0.00 0.12 0.22 0.00 0.00 0.00 0.10 0.19 0.00 0.00 0.14 0.40 0.16 0.00 0.00 0.00 0.22 0.10 0.10 0.00 0.15 0.00 0.00 0.13 0.15 0.82 0.13 0.00 0.12 0.21 0.00 0.28 0.00 0.10 0.22 0.33 0.08 0.22 0.00 0.10 0.18 0.00 0.24 0.18 0.00 0.13 0.49 0.00 0.00 0.43 0.22 0.00 0.08 K intron_retention Khc-73 chr2R - chr2R_11412243_11412519 chr2R_11412242_11412243;chr2R_11412519_11412520 chr2R_11410580_11412242;chr2R_11412520_11412834 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 1.67 NA 0.00 6.90 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 NA 2.38 4.65 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 K intron_retention Dscam,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3250996_3255892 chr2R_3250995_3250996;chr2R_3255892_3255893 chr2R_3250837_3250995;chr2R_3255893_3255920 45.45 NA NA 45.45 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 77.78 NA NA 55.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA REFI_chr2R_10491644_10491701,CG12868 chr2R - chr2R_10492608_10492671 chr2R_10492611_10492671 chr2R_10492672_10492842;chr2R_10491973_10492607 100.00 NA NA NA NA NA 97.92 100.00 100.00 NA NA 100.00 NA NA NA 97.44 NA NA NA NA NA 100.00 100.00 NA NA NA NA 100.00 100.00 NA 100.00 NA NA NA NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA NA NA NA NA NA NA K alternative_acceptor Mnt chrX + chrX_3593821_3593965 chrX_3593821_3593962 chrX_3593720_3593820;chrX_3593966_3594497 7.32 10.00 6.25 12.50 6.25 11.11 6.90 7.41 7.55 0.00 8.70 7.32 4.76 5.56 4.55 12.50 5.56 5.00 4.35 6.35 15.00 14.81 7.32 14.29 12.50 9.09 8.00 15.38 NA 5.00 3.33 NA 0.00 6.25 10.53 NA 7.32 12.00 14.29 4.76 NA 6.90 5.56 14.29 NA NA 11.76 7.14 15.15 5.56 13.04 7.14 NA NA 0.00 NA NA NA K cassette CG32306,I_chr3L_2436229_2459590,I_chr3L_2439831_2459590 chr3L + chr3L_2436229_2459590 chr3L_2436229_2439576;chr3L_2439831_2459590 chr3L_2439577_2439830 chr3L_2436209_2436228;chr3L_2459591_2459690 100.00 100.00 96.55 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 97.87 95.45 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.75 100.00 97.50 100.00 100.00 98.99 100.00 98.25 100.00 100.00 100.00 100.00 97.14 98.21 98.90 97.44 98.68 98.48 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 98.11 100.00 100.00 100.00 100.00 96.77 100.00 100.00 K alternative_acceptor sba chr3R - chr3R_19747432_19748617 chr3R_19747503_19748617 chr3R_19748618_19748681;chr3R_19747240_19747431 83.33 NA NA 100.00 NA NA 87.50 90.91 55.56 NA NA 90.00 NA NA 87.50 83.33 NA NA 50.00 85.71 100.00 55.56 83.33 NA NA NA NA NA NA NA 75.00 NA NA 83.33 83.33 75.00 NA NA NA 60.00 NA 84.62 NA 55.56 NA NA NA 53.33 75.00 NA NA 85.71 NA NA NA NA NA NA K cassette pyd,I_chr3R_4654041_4664113,I_chr3R_4749124_4756437 chr3R - chr3R_4660672_4664113 chr3R_4660672_4660998;chr3R_4661233_4664113 chr3R_4660999_4661232 chr3R_4660079_4660671;chr3R_4664114_4664213 100.00 100.00 100.00 98.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 100.00 100.00 100.00 99.09 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.19 100.00 99.09 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K multi_cassette Nedd4,I_chr3L_17534504_17535990,I_chr3L_17535485_17536604,I_chr3L_17536186_17536604,I_chr3L_17536813_17536863 chr3L + chr3L_17535485_17536604 chr3L_17535485_17535650;chr3L_17535913_17535990;chr3L_17536063_17536604 chr3L_17535651_17535912;chr3L_17535991_17536062 chr3L_17535417_17535484;chr3L_17536605_17536704 77.78 75.00 80.00 NA NA NA 83.33 NA 90.00 81.82 75.00 93.33 NA NA NA 80.00 NA 100.00 NA 100.00 NA 58.62 63.64 81.82 80.00 NA 70.00 80.00 63.64 72.73 100.00 66.67 78.57 100.00 71.43 NA 91.67 85.71 87.50 66.67 62.50 75.00 NA 58.82 73.33 66.67 75.00 76.00 83.33 62.50 63.64 80.00 NA 75.00 NA 100.00 NA 77.78 K jcn_only_AD Rap2l,I_chr2R_19951753_19952256,RI_chr2R_19952181_19952256 chr2R + chr2R_19952181_19952256;chr2R_19951753_19952256 chr2R_19951097_19952256 chr2R_19952257_19952356;chr2R_19950576_19951096 94.44 91.89 98.53 97.06 91.53 94.29 91.18 96.12 94.74 97.14 91.30 94.50 100.00 100.00 93.15 90.91 96.77 92.86 95.83 94.90 92.16 98.00 93.07 93.41 89.58 95.95 93.86 86.96 95.83 93.10 94.32 100.00 94.44 92.44 100.00 85.71 87.04 95.45 90.91 93.46 97.22 95.14 96.15 95.56 90.28 94.74 95.71 100.00 93.08 88.00 94.12 89.66 96.55 94.83 95.40 92.55 93.48 97.70 K alternative_donor CkIIbeta,I_chrX_11686847_11687475,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11687025_11687475;chrX_11686979_11687475;chrX_11687313_11687475 chrX_11686948_11687475 chrX_11687476_11687551;chrX_11686929_11686947 4.17 13.04 8.33 9.30 5.56 4.55 5.56 2.17 4.76 0.00 5.56 2.22 4.17 7.69 3.85 2.04 8.33 9.09 8.33 6.38 14.29 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 3.23 7.69 3.45 8.89 0.00 0.00 6.25 10.00 0.00 2.63 0.00 8.16 14.29 4.55 0.00 0.00 4.76 0.00 7.27 0.00 0.00 0.00 6.25 0.00 10.26 6.25 0.00 7.14 K alternative_acceptor CG9331,chr2L_20823542_20824101.0,I_chr2L_20824494_20826632,I_chr2L_20825513_20825658 chr2L + chr2L_20823208_20825667 chr2L_20823208_20825658 chr2L_20823139_20823207;chr2L_20825668_20825758 98.65 98.00 98.33 100.00 95.45 98.36 96.97 98.65 98.72 100.00 100.00 99.25 97.44 98.15 98.41 99.05 100.00 100.00 97.96 99.35 100.00 97.26 98.91 98.67 97.50 100.00 98.72 100.00 100.00 97.44 97.18 100.00 97.73 98.28 100.00 98.72 97.96 100.00 98.97 97.85 98.00 95.19 96.67 94.64 98.75 97.59 100.00 95.59 99.08 97.67 98.81 97.83 98.36 99.00 97.10 98.48 100.00 100.00 K intron_retention CG15362,CG7289 chr2L + chr2L_1981584_1981641 chr2L_1981583_1981584;chr2L_1981641_1981642 chr2L_1981515_1981583;chr2L_1981642_1981692 8.52 7.41 7.14 12.90 0.00 0.00 13.79 3.23 13.21 0.00 15.79 8.20 NA 10.53 11.11 6.25 NA 0.00 0.00 11.32 4.17 0.00 21.05 10.26 NA 25.00 26.32 30.77 NA NA 12.50 0.00 22.22 13.64 4.55 11.54 14.81 9.52 5.56 9.68 NA 7.41 15.79 NA 8.33 6.67 0.00 15.79 6.38 10.34 0.00 17.65 4.00 0.00 14.81 8.70 6.67 0.00 K intron_retention Sec16,I_chrX_12501913_12502010,I_chrX_12502899_12502973 chrX + chrX_12502899_12502973 chrX_12502898_12502899;chrX_12502973_12502974 chrX_12502799_12502898;chrX_12502974_12503073 92.86 NA 90.91 88.89 NA 100.00 100.00 91.67 100.00 88.89 NA 100.00 90.00 100.00 91.67 93.33 NA NA 100.00 75.00 NA NA 100.00 NA NA 92.86 100.00 NA 88.89 88.89 88.89 90.91 93.75 90.91 NA NA NA NA NA 94.12 95.45 82.35 NA 90.91 NA 94.74 NA 89.29 94.74 100.00 NA NA NA NA 90.91 NA NA 100.00 K intron_retention mRpL1 chr3R + chr3R_4127425_4127478 chr3R_4127424_4127425;chr3R_4127478_4127479 chr3R_4127122_4127424;chr3R_4127479_4127788 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 1.67 0.00 0.00 K intron_retention Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046111 chr3L_16045250_16045251;chr3L_16046111_16046112 chr3L_16045216_16045250;chr3L_16046112_16046204 61.11 61.11 64.29 56.25 60.00 71.43 72.00 56.25 61.11 NA NA 64.29 64.00 68.18 42.86 68.97 45.45 90.00 58.62 52.94 87.50 57.50 63.33 73.33 54.55 73.68 71.43 63.64 53.33 44.00 50.00 36.36 60.00 70.00 72.22 72.41 66.67 75.00 58.82 55.17 43.75 70.97 52.63 69.23 25.00 47.06 66.67 46.15 55.00 NA 66.67 NA NA NA 64.29 NA NA 22.73 K intron_retention CG9171,I_chr2L_5799412_5800043 chr2L - chr2L_5799278_5800043 chr2L_5799277_5799278;chr2L_5800043_5800044 chr2L_5799124_5799277;chr2L_5800044_5800143 40.00 NA NA NA NA NA NA 20.00 46.67 NA NA 41.18 NA 23.08 NA 50.00 NA NA 30.77 54.55 NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA 46.15 NA NA NA NA NA 40.00 NA NA NA NA NA NA 33.33 NA NA NA K intron_retention CG6966 chr3R - chr3R_10907106_10907167 chr3R_10907105_10907106;chr3R_10907167_10907168 chr3R_10905042_10907105;chr3R_10907168_10907954 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 1.61 2.56 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.93 0.00 1.61 4.00 0.00 0.00 0.00 1.47 2.13 3.12 0.00 0.00 0.00 1.92 0.00 3.77 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 2.35 0.00 K jcn_only_AD CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516706_21517821;chr3L_21516399_21517821;chr3L_21517168_21517821;chr3L_21516722_21517821;chr3L_21516501_21517821;chr3L_21516918_21517821;chr3L_21516343_21517821;chr3L_21516728_21517821 chr3L_21516330_21517821 chr3L_21517822_21517920;chr3L_21516311_21516329 17.78 4.55 12.00 23.68 40.00 32.14 15.25 45.24 12.00 NA NA 23.81 NA 34.78 24.00 15.38 20.00 13.33 NA 23.33 NA 12.00 9.09 13.64 NA 30.00 0.00 NA 0.00 NA 38.46 NA 17.78 22.45 NA 5.00 3.57 16.67 NA 20.83 NA 25.42 26.09 9.09 NA 12.50 0.00 7.14 19.67 NA NA NA NA NA 22.22 NA NA 30.00 K intron_retention l(2)k01209,I_chr2R_13308079_13310771,I_chr2R_13309452_13310771,RI_chr2R_13310877_13311160 chr2R + chr2R_13309452_13311160 chr2R_13309451_13309452;chr2R_13311160_13311161 chr2R_13309352_13309451;chr2R_13311161_13311260 4.65 4.11 0.00 0.00 8.33 0.00 4.12 8.33 4.10 6.98 6.45 6.98 0.00 11.76 2.70 4.35 0.00 6.25 8.70 5.30 7.14 6.25 3.54 0.00 0.00 3.03 4.81 8.57 4.55 4.84 5.77 6.82 10.42 7.58 4.44 7.02 2.26 4.23 3.64 14.55 4.55 5.41 5.88 1.98 5.26 3.92 2.13 10.42 10.00 2.60 5.88 4.65 0.00 0.00 4.88 1.85 0.00 17.14 K jcn_only_AA l(3)05822,I_chr3R_14115739_14115801 chr3R - chr3R_14115739_14115801 chr3R_14115743_14115801 chr3R_14115802_14115901;chr3R_14115639_14115738 99.36 99.35 99.36 99.45 100.00 100.00 100.00 99.10 99.28 99.22 99.31 99.16 99.21 99.25 99.32 99.42 100.00 100.00 99.34 99.22 97.66 100.00 99.35 99.33 100.00 99.41 100.00 96.79 99.20 100.00 99.25 100.00 100.00 100.00 99.28 100.00 99.50 100.00 98.86 98.69 100.00 99.33 99.12 99.42 98.46 99.20 100.00 100.00 98.95 98.91 100.00 98.31 100.00 100.00 100.00 97.93 99.39 99.73 K intron_retention VhaPPA1-1,I_chr3R_10728645_10728933 chr3R - chr3R_10729610_10729672 chr3R_10729609_10729610;chr3R_10729672_10729673 chr3R_10729545_10729609;chr3R_10729673_10729699 59.46 72.00 45.00 53.66 38.46 64.29 55.00 63.33 59.46 NA NA 50.00 41.67 37.50 40.00 60.87 NA 50.00 50.00 46.00 56.25 86.15 80.49 78.57 78.79 66.67 75.00 64.00 91.84 53.85 40.00 55.56 41.67 74.19 85.19 60.53 65.62 80.00 70.00 45.10 56.00 64.10 45.45 46.43 47.37 55.88 85.29 44.44 46.34 75.00 70.00 NA 60.61 78.05 41.18 80.65 61.29 14.29 K jcn_only_AA CG4585,I_chr2R_19752558_19752634 chr2R - chr2R_19751932_19752634 chr2R_19752558_19752634 chr2R_19752635_19752734;chr2R_19750513_19751931 0.00 0.00 0.00 1.00 0.00 0.00 0.47 0.00 0.32 0.00 1.16 1.27 1.32 0.00 0.00 0.00 0.87 1.01 0.00 0.52 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 5.56 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 0.00 4.00 K intron_retention Stat92E,att-ORFB chr3R - chr3R_16363186_16364942 chr3R_16363185_16363186;chr3R_16364942_16364943 chr3R_16362916_16363185;chr3R_16364943_16365057 2.11 1.32 2.82 1.74 0.00 1.47 2.73 1.50 1.93 5.56 2.11 2.65 0.87 1.23 0.00 2.90 0.00 0.00 1.00 1.71 0.00 4.60 2.17 2.84 2.04 1.28 2.40 6.25 9.62 0.90 1.37 2.41 2.11 2.63 3.10 2.35 3.42 1.65 2.55 2.23 3.90 2.55 1.32 1.82 6.59 3.97 1.92 6.02 1.74 1.48 2.62 0.98 4.17 1.83 0.90 2.56 1.97 2.29 N mutually_exclusive PHGPx chr3L + chr3L_3326368_3327342,chr3L_3327554_3327859 chr3L_3326368_3326522,chr3L_3326713_3327859 chr3L_3327343_3327553 chr3L_3326523_3326712 chr3L_3326358_3326367;chr3L_3327860_3328183 91.94 90.43 90.67 97.73 91.95 91.61 96.51 95.34 92.17 90.61 94.25 90.03 95.58 94.74 94.12 94.64 94.78 95.26 94.71 94.40 94.83 88.32 90.12 91.93 90.56 95.54 93.65 94.80 94.37 90.00 90.56 87.82 86.51 93.80 88.36 90.88 90.18 91.32 90.91 92.57 90.98 91.29 93.02 87.69 89.27 86.97 88.63 89.52 92.83 92.86 92.80 91.94 94.24 89.95 93.97 90.67 93.67 89.63 K jcn_only_AA Taf6 chr3L + chr3L_19593890_19594012 chr3L_19593890_19594009 chr3L_19593434_19593889;chr3L_19594013_19594247 99.01 97.40 95.45 98.41 92.59 100.00 96.43 97.62 100.00 100.00 97.30 98.88 100.00 100.00 100.00 100.00 100.00 97.67 100.00 99.29 100.00 97.83 100.00 98.65 95.00 100.00 97.33 93.75 97.92 100.00 100.00 100.00 98.32 100.00 98.59 100.00 100.00 98.53 99.07 99.08 100.00 98.75 93.75 100.00 99.34 100.00 98.98 98.44 98.72 98.13 98.77 100.00 98.44 99.01 95.45 100.00 98.92 99.25 K intron_retention deltaCOP,I_chrX_1754047_1754089,I_chrX_1755132_1755191,E_chrX_1755139_1755188,I_chrX_1757755_1757801 chrX - chrX_1754016_1754089 chrX_1754015_1754016;chrX_1754089_1754090 chrX_1753947_1754015;chrX_1754090_1754189 0.31 0.00 0.63 0.57 0.38 0.00 1.66 0.00 0.30 0.42 0.00 0.45 0.45 0.00 0.94 0.75 0.00 0.00 0.00 0.70 0.46 0.40 0.72 0.20 0.33 0.00 2.05 1.49 0.28 0.00 0.83 0.00 0.31 0.50 1.43 0.00 0.16 0.22 0.31 0.00 0.48 0.63 0.00 1.04 0.00 0.24 0.00 0.00 0.63 0.36 0.93 0.00 0.00 0.00 0.00 0.47 0.32 0.00 K jcn_only_AA Fps85D,I_chr3R_5194729_5194776,I_chr3R_5216796_5218450 chr3R - chr3R_5194706_5194776 chr3R_5194729_5194776 chr3R_5194777_5194876;chr3R_5194629_5194705 1.85 0.00 1.59 0.00 1.45 1.75 1.61 1.85 1.48 3.23 3.64 2.68 1.79 6.78 2.00 4.71 0.00 0.00 3.77 1.57 0.00 1.43 2.41 1.20 0.00 3.17 1.56 10.00 3.57 2.44 2.44 4.00 4.55 2.65 0.00 2.04 0.00 4.76 5.19 3.75 3.23 0.69 1.79 6.10 1.75 1.59 0.00 4.05 3.70 2.90 4.76 1.82 0.00 2.94 0.00 0.00 3.64 1.49 K alternative_donor CG17082,I_chr2R_632143_635290,R_chr2R_642176_644740,I_chr2R_644094_644145,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_631984_636726;chr2R_631907_636726;chr2R_631971_636726;chr2R_632143_636726 chr2R_632083_636726 chr2R_636727_636891;chr2R_631902_631906 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention ifc,I_chr2L_5986893_5987347,RI_chr2L_5987175_5987347,noncoding_1271 chr2L + chr2L_5986893_5987347 chr2L_5986892_5986893;chr2L_5987347_5987348 chr2L_5986793_5986892;chr2L_5987348_5987447 92.86 80.00 92.86 100.00 92.86 100.00 91.67 90.48 86.21 NA NA 85.19 77.78 92.86 88.24 94.12 92.86 100.00 93.33 93.10 91.67 94.44 93.75 90.91 NA 100.00 84.21 NA NA 100.00 83.33 NA 92.86 95.65 88.89 NA 91.67 80.00 78.57 92.86 NA 96.15 NA 83.33 NA 100.00 NA 90.91 93.10 NA 90.91 92.31 NA NA 93.75 NA NA NA K alternative_donor Dcp2,F_chr3L_15815909_15816023,F_chr3L_15817090_15817547 chr3L - chr3L_15817090_15818570;chr3L_15817090_15817547 chr3L_15817090_15819385 chr3L_15816990_15817089;chr3L_15819386_15819487 4.55 1.67 4.17 12.03 11.76 6.78 5.26 5.45 3.41 22.22 9.43 11.80 8.64 8.43 2.53 5.17 2.63 5.45 1.05 10.00 8.62 19.44 4.49 2.04 8.70 11.25 3.33 2.50 4.17 4.92 10.71 0.00 4.71 3.85 2.00 7.46 4.69 2.22 4.26 2.17 15.38 6.21 8.54 1.39 0.00 0.00 3.12 5.21 4.55 4.76 4.35 2.04 0.00 10.53 4.17 4.17 0.00 2.70 K intron_retention CLIP-190,I_chr2L_17394493_17404060,I_chr2L_17401291_17404060,F_chr2L_17401582_17401681,I_chr2L_17401582_17402303 chr2L + chr2L_17401291_17401515 chr2L_17401290_17401291;chr2L_17401515_17401516 chr2L_17401191_17401290;chr2L_17401516_17401581 18.46 25.00 18.18 14.29 NA 18.75 41.67 6.67 19.35 6.67 NA 18.18 53.33 23.53 25.00 29.41 23.08 21.43 38.46 13.51 14.29 43.75 17.50 15.79 27.78 NA 16.00 52.63 36.84 44.44 20.00 NA 31.82 21.43 16.67 0.00 9.68 8.33 14.29 25.00 26.67 20.59 22.22 20.00 15.38 15.00 13.33 25.93 15.38 27.78 14.29 NA 5.56 12.50 5.26 12.50 0.00 10.53 K intron_retention RpL5,I_chr2L_22428750_22428846 chr2L - chr2L_22429298_22429352 chr2L_22429297_22429298;chr2L_22429352_22429353 chr2L_22429269_22429297;chr2L_22429353_22429396 45.83 NA 36.36 36.36 NA NA NA 45.83 42.86 NA NA NA NA NA 25.00 50.00 NA NA 36.84 NA NA NA NA NA NA NA NA NA 86.67 NA NA NA NA 55.56 NA NA NA NA NA 57.89 NA 34.62 53.85 NA NA NA NA 63.64 46.88 NA NA NA NA NA NA NA NA 43.24 K alternative_acceptor I_chr2R_9844856_9845327,CG13349,RI_chr2R_9846641_9846709 chr2R - chr2R_9847607_9847732 chr2R_9847615_9847732 chr2R_9847733_9847733;chr2R_9847073_9847606 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.17 100.00 100.00 100.00 100.00 97.50 98.15 100.00 100.00 100.00 98.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG9795,I_chr3R_151216_151418 chr3R + chr3R_151184_151418;chr3R_151180_151418;chr3R_151212_151418 chr3R_151216_151418 chr3R_151419_151518;chr3R_151116_151179 0.00 NA 8.70 0.00 0.00 0.00 4.35 5.26 1.75 0.00 NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 2.27 NA 4.76 0.00 3.12 NA NA 3.12 NA NA NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 6.67 0.00 NA 2.44 0.00 6.06 0.00 0.00 0.00 NA 2.86 2.86 3.12 0.00 NA NA 4.00 3.85 7.69 0.00 K alternative_acceptor CG4662 chr3R + chr3R_15677641_15677744 chr3R_15677641_15677741 chr3R_15677554_15677640;chr3R_15677745_15678147 11.83 5.88 13.64 16.67 NA 9.52 13.33 17.39 18.92 7.69 13.64 10.71 NA 15.38 13.04 9.52 12.50 5.26 10.53 10.00 6.67 8.33 13.33 17.86 18.75 4.35 18.52 15.00 8.33 17.39 13.04 12.50 3.57 14.29 5.26 5.56 29.17 10.00 9.09 13.64 14.29 8.51 7.14 10.71 6.25 19.05 9.68 17.86 12.12 6.67 9.09 11.11 15.38 NA 11.54 15.38 16.67 6.67 K intron_retention trio,CE_chr3L_998382_998879,I_chr3L_999683_1009321 chr3L - chr3L_998732_998823 chr3L_998731_998732;chr3L_998823_998824 chr3L_998351_998731;chr3L_998824_999013 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention csw,I_chrX_2002576_2003165 chrX + chrX_2005657_2005736 chrX_2005656_2005657;chrX_2005736_2005737 chrX_2005238_2005656;chrX_2005737_2005899 75.86 91.67 72.73 84.62 NA 61.54 88.89 84.62 77.27 83.33 NA 68.75 63.64 NA 92.86 NA NA NA NA 64.00 NA 90.32 76.00 70.83 80.00 100.00 94.12 53.85 70.00 69.57 70.00 73.33 81.25 69.23 78.95 93.75 94.12 90.91 70.59 75.86 95.24 64.00 77.78 73.33 80.95 66.67 91.67 74.07 73.33 90.91 66.67 81.82 57.14 75.00 87.50 69.23 60.00 62.50 K intron_retention Socs44A,I_chr2R_4020297_4020426 chr2R + chr2R_4015767_4015828 chr2R_4015766_4015767;chr2R_4015828_4015829 chr2R_4015083_4015766;chr2R_4015829_4016981 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 1.94 0.00 0.00 3.03 0.00 0.00 5.56 3.45 0.00 0.00 0.00 4.35 0.00 1.64 0.00 0.00 0.00 2.04 2.53 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 N jcn_only_AA vir-1,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,I_chr2L_12421830_12423260 chr2L - chr2L_12421902_12423322;chr2L_12421830_12423322 chr2L_12421862_12423322 chr2L_12423323_12423328;chr2L_12421816_12421829 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.96 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG16892,psnoRNA:CG16892-a chrX + chrX_9168724_9168959 chrX_9168723_9168724;chrX_9168959_9168960 chrX_9168347_9168723;chrX_9168960_9169472 3.12 0.00 7.14 16.67 0.00 NA 9.09 0.00 6.82 NA NA 4.08 13.33 0.00 NA 0.00 NA 0.00 0.00 10.87 0.00 23.53 5.26 0.00 NA 4.00 10.00 17.65 NA 7.69 10.53 6.67 0.00 9.09 0.00 NA 0.00 3.85 6.06 0.00 0.00 16.67 9.52 0.00 0.00 0.00 3.12 0.00 0.00 0.00 4.17 0.00 0.00 0.00 4.76 4.00 0.00 7.69 K jcn_only_AA Spn,I_chr3L_2511764_2512148 chr3L - chr3L_2512473_2512531 chr3L_2512482_2512531 chr3L_2512532_2512731;chr3L_2512295_2512472 9.09 NA NA 6.12 NA 20.00 3.12 19.35 2.13 NA NA 14.29 15.38 NA 8.00 17.39 NA NA 19.35 8.82 NA 3.85 NA 0.00 NA 14.29 NA NA NA 9.09 NA NA 11.11 7.14 NA NA 9.09 NA NA 4.55 NA 9.52 16.00 NA NA NA NA 12.90 17.02 NA NA NA NA NA 0.00 NA NA 7.69 K jcn_only_AA Sry-beta chr3R + chr3R_25865608_25865675 chr3R_25865608_25865660 chr3R_25865454_25865607;chr3R_25865676_25866753 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 97.78 NA 100.00 100.00 98.08 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 NA 100.00 100.00 100.00 100.00 96.55 96.55 100.00 100.00 96.30 100.00 90.91 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Dhc62B,CG13933,I_chr3L_1773911_1773984 chr3L - chr3L_1766543_1766600 chr3L_1766542_1766543;chr3L_1766600_1766601 chr3L_1766537_1766542;chr3L_1766601_1766867 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor app,RI_chr3L_12201038_12201989,I_chr3L_12257837_12259754,I_chr3L_12257984_12259754,RI_chr3L_12258006_12259754,I_chr3L_12259361_12259754 chr3L - chr3L_12258011_12259754 chr3L_12258011_12258691 chr3L_12257721_12258010;chr3L_12259755_12259854 40.00 NA 33.33 50.00 NA NA 42.86 60.00 42.86 NA NA 33.33 NA 11.11 50.00 30.00 NA NA 40.00 33.33 NA NA NA NA NA 50.00 50.00 NA NA NA NA NA NA 40.00 NA 100.00 NA NA NA NA NA 40.00 66.67 20.00 NA NA NA 14.29 33.33 NA NA NA NA NA 20.00 NA NA 12.50 K intron_retention I_chr3R_1303481_1304607,CG31550 chr3R + chr3R_1314813_1314865 chr3R_1314812_1314813;chr3R_1314865_1314866 chr3R_1314254_1314812;chr3R_1314866_1314995 2.38 0.00 0.00 4.44 2.38 3.51 4.88 2.53 5.65 3.77 0.00 0.00 2.17 7.84 6.25 2.82 0.00 2.90 3.28 3.03 0.00 0.98 2.38 5.95 0.00 0.00 10.61 6.25 5.79 0.83 1.89 1.21 1.32 2.35 0.00 0.00 4.62 1.75 0.00 3.48 2.92 3.23 2.56 1.08 0.92 4.43 2.83 0.96 0.93 3.95 4.21 0.00 4.44 3.19 1.45 1.12 4.76 0.73 K intron_retention CG13895,RI_chr3L_707623_707678,RI_chr3L_711692_711744 chr3L - chr3L_708004_708070 chr3L_708003_708004;chr3L_708070_708071 chr3L_707890_708003;chr3L_708071_708510 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.85 NA 0.00 2.56 8.33 NA 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 7.14 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 K intron_retention l(2)s5379,I_chr2L_2229179_2229265 chr2L + chr2L_2229576_2229637 chr2L_2229575_2229576;chr2L_2229637_2229638 chr2L_2229457_2229575;chr2L_2229638_2229813 1.30 0.00 1.34 1.80 0.90 3.42 3.14 1.02 2.56 0.00 2.21 1.69 3.11 2.78 0.62 3.26 2.92 3.31 0.56 2.45 0.90 1.35 0.56 1.28 0.00 2.52 0.68 2.61 1.52 0.00 0.55 0.67 0.00 2.64 0.00 2.00 0.00 0.98 0.85 1.23 1.30 1.71 1.72 1.63 1.21 0.82 1.72 2.29 1.97 1.64 0.65 0.00 0.00 0.00 1.99 0.72 2.81 0.00 K intron_retention CG15445,REI_chrX_20988432_20988485,RI_chrX_20988432_20988489,REI_chrX_20988439_20988489,I_chrX_20988439_20988552 chrX + chrX_20988432_20988485 chrX_20988431_20988432;chrX_20988485_20988486 chrX_20988339_20988431;chrX_20988486_20988585 71.43 71.43 65.00 73.53 69.57 63.64 52.00 79.41 61.70 63.64 81.25 63.16 65.00 59.09 75.00 76.67 88.24 76.19 70.83 74.42 66.67 48.00 83.87 76.47 77.78 80.95 86.21 76.67 79.41 76.19 75.00 66.67 81.58 75.68 68.18 86.21 78.26 91.67 65.38 63.16 75.00 83.87 63.16 80.00 68.18 63.64 45.83 72.00 70.27 65.71 64.71 83.33 61.11 66.67 67.86 57.14 73.08 50.88 N jcn_only_AA CG8080,REI_chr2R_4979159_4979234,I_chr2R_4979276_4979936,CG13741 chr2R - chr2R_4979377_4979936;chr2R_4979159_4979936 chr2R_4979276_4979936 chr2R_4979937_4980036;chr2R_4979059_4979158 0.86 0.00 NA 0.00 5.00 4.00 NA 3.70 0.00 NA NA 2.70 NA 0.00 3.33 0.00 0.00 NA 3.70 2.33 NA NA 0.00 0.00 NA NA NA NA NA NA 7.69 NA 0.00 2.63 NA NA 0.00 7.41 NA 2.56 NA 4.17 8.00 5.71 NA 0.00 NA 0.00 1.72 0.00 5.56 0.00 NA NA 2.63 0.00 0.00 0.00 K intron_retention CG5463 chr3R - chr3R_19955039_19955093 chr3R_19955038_19955039;chr3R_19955093_19955094 chr3R_19954763_19955038;chr3R_19955094_19955120 25.00 NA NA NA NA NA NA NA 7.14 NA NA 25.00 NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention cnc,I_chr3R_19014852_19016738,I_chr3R_19046366_19046507,I_chr3R_19046619_19047567 chr3R - chr3R_19017506_19017562 chr3R_19017505_19017506;chr3R_19017562_19017563 chr3R_19017418_19017505;chr3R_19017563_19018003 0.00 0.00 0.00 0.00 0.00 10.53 10.53 7.14 15.00 0.00 NA 8.57 NA NA 0.00 18.75 0.00 14.29 0.00 13.64 NA 0.00 0.00 6.45 0.00 0.00 0.00 0.00 3.57 0.00 5.41 0.00 0.00 7.14 0.00 2.94 5.26 0.00 7.89 5.26 0.00 6.52 0.00 2.94 0.00 0.00 0.00 0.00 11.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mle chr2R - chr2R_1868065_1868123 chr2R_1868064_1868065;chr2R_1868123_1868124 chr2R_1867548_1868064;chr2R_1868124_1868212 4.00 NA NA 16.67 NA NA 0.00 0.00 8.00 NA NA 14.29 NA NA NA 0.00 NA NA NA 0.00 NA 15.38 25.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 22.22 NA NA NA NA NA 0.00 NA NA NA K intron_retention CG34413,RI_chr2R_20772104_20774745,I_chr2R_20773500_20774745 chr2R + chr2R_20774668_20774745 chr2R_20774667_20774668;chr2R_20774745_20774746 chr2R_20774473_20774667;chr2R_20774746_20774845 22.03 19.67 31.91 23.40 27.91 27.08 26.74 27.50 27.70 9.80 21.43 26.92 20.93 23.53 24.56 29.63 26.67 24.00 21.74 24.19 25.00 30.48 22.12 20.56 22.22 50.00 25.58 33.33 28.85 16.98 21.52 20.93 13.64 18.37 22.03 14.81 17.46 22.73 14.89 23.60 21.05 20.95 25.00 14.77 23.91 16.92 17.05 22.86 19.40 20.35 18.75 22.22 21.43 15.15 19.74 16.48 16.28 13.89 K intron_retention Nap1,I_chr2R_19794052_19794730,I_chr2R_19794246_19794473 chr2R - chr2R_19794246_19794730 chr2R_19794245_19794246;chr2R_19794730_19794731 chr2R_19794146_19794245;chr2R_19794731_19794812 1.19 1.60 1.18 1.22 1.02 0.85 1.43 1.40 0.83 0.00 0.94 0.62 1.35 0.61 0.78 0.99 1.28 0.47 0.80 0.69 0.50 1.51 1.60 1.37 1.38 1.47 2.45 1.54 2.80 0.93 2.85 1.39 1.90 1.02 1.20 5.92 1.07 1.51 1.80 0.61 0.89 1.06 2.27 0.71 0.69 1.67 2.34 0.93 0.53 1.83 3.94 0.00 0.31 2.65 1.19 1.84 0.99 0.92 K intron_retention Paf-AHalpha chrX - chrX_15679163_15679234 chrX_15679162_15679163;chrX_15679234_15679235 chrX_15678698_15679162;chrX_15679235_15679338 84.29 90.91 61.11 62.50 90.00 90.91 65.00 77.78 84.38 NA 80.00 73.33 92.31 88.89 87.50 94.44 66.67 84.62 69.23 80.95 NA 100.00 84.21 76.92 NA 88.89 78.57 NA NA 72.73 68.42 NA 88.89 88.24 80.00 100.00 52.94 90.00 78.57 78.57 NA 80.95 87.50 90.91 80.00 90.91 66.67 NA 87.50 85.71 91.67 84.62 88.89 77.78 91.67 61.11 77.78 NA K jcn_only_AA Sdc,I_chr2R_17286819_17367595,I_chr2R_17324594_17367595 chr2R - chr2R_17368045_17368518;chr2R_17367862_17368518 chr2R_17367884_17368518 chr2R_17368519_17368632;chr2R_17367596_17367861 9.09 NA NA 11.11 NA 0.00 14.29 5.66 6.45 NA NA 16.13 0.00 9.68 NA 10.94 NA NA 12.50 11.43 NA NA NA NA NA 20.69 NA NA 9.09 NA 6.38 NA NA 11.86 NA NA NA NA NA NA 14.29 2.44 4.76 NA NA 4.76 NA 3.23 15.28 NA NA NA NA NA 8.00 NA NA 8.00 K alternative_donor Ssadh,I_chr3R_21451887_21452065,RI_chr3R_21451890_21451963,I_chr3R_21452371_21452464,I_chr3R_21452407_21452453 chr3R - chr3R_21451890_21452065 chr3R_21451890_21451963 chr3R_21451790_21451889;chr3R_21452066_21452165 0.00 2.44 4.35 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 5.56 4.76 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL39,I_chr2R_19949515_19949720 chr2R - chr2R_19949825_19949910 chr2R_19949824_19949825;chr2R_19949910_19949911 chr2R_19949721_19949824;chr2R_19949911_19950046 0.02 0.00 0.00 0.03 0.05 0.00 0.05 0.02 0.02 0.00 0.00 0.02 0.00 0.01 0.02 0.02 0.00 0.02 0.03 0.01 0.00 0.00 0.25 0.00 0.00 0.04 0.51 0.23 0.11 0.00 0.01 0.07 0.03 0.02 0.00 0.43 0.08 0.17 0.02 0.05 0.12 0.01 0.01 0.06 0.00 0.20 0.08 0.09 0.05 0.04 0.00 0.11 0.11 0.00 0.00 0.10 0.04 0.02 K alternative_acceptor Iswi chr2R + chr2R_8524243_8524348;chr2R_8524243_8524316 chr2R_8524243_8524328 chr2R_8524226_8524242;chr2R_8524349_8524495 5.13 10.71 2.63 4.76 2.00 3.70 5.48 4.55 2.56 5.88 0.00 1.59 7.89 8.11 4.65 3.30 2.17 3.23 3.64 5.13 3.70 10.53 5.00 7.41 16.67 8.11 9.52 0.00 20.00 5.56 12.12 8.33 6.25 1.52 4.76 13.33 4.88 9.52 5.88 4.35 NA 2.74 3.57 5.13 NA 6.67 4.76 5.26 6.85 5.56 3.45 6.52 NA NA 4.17 5.56 5.00 5.56 K intron_retention crol,I_chr2L_11799403_11802904 chr2L - chr2L_11803899_11808013 chr2L_11803898_11803899;chr2L_11808013_11808014 chr2L_11803785_11803898;chr2L_11808014_11808100 0.00 NA 0.00 3.92 NA NA 0.00 12.50 0.00 NA 0.00 5.26 NA NA NA 5.56 NA 7.41 NA NA NA 7.41 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 12.50 0.00 0.00 NA 0.00 13.64 NA 0.00 NA 0.00 10.53 NA 0.00 12.00 6.25 NA NA NA NA NA 0.00 NA NA NA K mutually_exclusive Hrb27C,I_chr2L_6924401_6924743 chr2L + chr2L_6920862_6922730,chr2L_6922827_6923783 chr2L_6920862_6920932,chr2L_6921074_6923783 chr2L_6922731_6922826 chr2L_6920933_6921073 chr2L_6920793_6920861;chr2L_6923784_6924400 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.32 NA 0.00 0.00 0.97 0.71 0.80 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 1.28 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG2765,RI_chr2R_20849027_20852094,I_chr2R_20849271_20849626,I_chr2R_20849271_20850005,E_chr2R_20849271_20850693,E_chr2R_20849271_20851166,E_chr2R_20849271_20852090,E_chr2R_20851190_20852094 chr2R - chr2R_20849027_20849128 chr2R_20849026_20849027;chr2R_20849128_20849129 chr2R_20848927_20849026;chr2R_20849129_20849270 1.14 0.68 0.00 1.97 0.68 0.57 3.72 1.27 1.33 0.00 2.47 2.10 0.76 0.59 0.89 0.00 1.70 0.53 0.99 1.45 1.14 2.23 0.47 1.08 2.49 1.78 2.25 7.25 12.67 0.43 0.90 0.00 1.32 1.34 1.67 2.86 1.36 0.65 0.73 1.55 3.33 0.89 1.61 0.93 2.10 1.90 0.35 2.67 1.30 0.77 1.13 0.55 0.65 0.00 2.88 0.89 0.46 1.97 K intron_retention CG31523,I_chr3R_294322_294479,RI_chr3R_294322_296218,I_chr3R_294322_297157,I_chr3R_294322_298014,I_chr3R_294322_300973,RI_chr3R_294322_300982,I_chr3R_294322_304799,RI_chr3R_298911_304354 chr3R - chr3R_294322_296218 chr3R_294321_294322;chr3R_296218_296219 chr3R_294222_294321;chr3R_296219_296282 16.88 NA NA NA NA NA NA NA 18.75 NA NA 7.69 NA NA NA NA NA NA NA 15.00 NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor SWAP,RI_chrX_938935_938985,I_chrX_941459_982652 chrX + chrX_938935_939003 chrX_938935_938985 chrX_938835_938934;chrX_939004_939085 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 1.67 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1737 chrX + chrX_11247633_11247680 chrX_11247632_11247633;chrX_11247680_11247681 chrX_11245724_11247632;chrX_11247681_11248794 98.96 100.00 97.87 100.00 100.00 100.00 98.36 98.72 99.21 100.00 100.00 100.00 97.73 100.00 98.36 100.00 100.00 97.78 97.87 99.30 97.78 100.00 100.00 100.00 100.00 100.00 98.68 100.00 97.83 100.00 100.00 100.00 96.43 100.00 97.83 98.73 99.15 98.81 99.09 98.96 96.43 99.15 97.96 100.00 97.33 98.57 97.50 98.82 99.18 98.70 98.78 100.00 98.08 97.18 98.11 98.51 96.77 98.21 K alternative_acceptor CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_240655_240769 chr4_240711_240769 chr4_240770_240869;chr4_240611_240654 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.16 0.00 0.00 1.35 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG7903,I_chr3R_25820462_25820871,I_chr3R_25820814_25820871 chr3R - chr3R_25820462_25820871 chr3R_25820462_25820514;chr3R_25820801_25820871 chr3R_25820515_25820800 chr3R_25820362_25820461;chr3R_25820872_25820931 98.28 97.67 100.00 88.57 100.00 100.00 96.30 97.30 96.49 100.00 94.74 98.25 95.45 100.00 100.00 100.00 95.24 100.00 95.00 98.08 100.00 100.00 100.00 98.31 100.00 100.00 97.22 96.43 100.00 97.30 88.89 93.33 95.74 97.37 100.00 92.59 100.00 100.00 100.00 100.00 100.00 98.48 95.65 97.67 100.00 98.08 100.00 97.06 98.08 97.44 98.15 100.00 100.00 100.00 96.88 100.00 98.28 98.11 K intron_retention CG32344,RI_chr3L_321550_321914,I_chr3L_326540_326703,RI_chr3L_326725_326866 chr3L - chr3L_321550_321914 chr3L_321549_321550;chr3L_321914_321915 chr3L_321519_321549;chr3L_321915_322014 55.56 NA NA 23.53 NA NA 55.56 NA NA NA NA 78.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA NA 77.78 NA NA NA 53.85 NA NA NA 63.64 NA NA NA 46.67 50.00 K intron_retention mei-218,mei-217 chrX - chrX_17036741_17036834 chrX_17036740_17036741;chrX_17036834_17036835 chrX_17036677_17036740;chrX_17036835_17036969 0.00 NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA 0.00 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA K intron_retention CG9149,CG2469,Myo61F chr3L + chr3L_1303094_1303187 chr3L_1303093_1303094;chr3L_1303187_1303188 chr3L_1302944_1303093;chr3L_1303188_1303309 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 1.92 0.00 0.00 0.00 0.00 2.04 0.00 0.00 4.88 0.00 2.04 1.54 2.13 0.00 1.18 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 K jcn_only_AA PNGase,I_chr2R_1906759_1906817,I_chr2R_1906899_1906977 chr2R + chr2R_1906759_1906817 chr2R_1906759_1906813 chr2R_1906701_1906758;chr2R_1906818_1906898 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.70 100.00 100.00 100.00 99.08 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.47 98.96 99.20 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.44 98.48 99.45 100.00 100.00 98.91 98.59 100.00 100.00 100.00 100.00 100.00 99.66 K jcn_only_AD Arf51F chr2R + chr2R_11210218_11210628 chr2R_11210247_11210628 chr2R_11210629_11210646;chr2R_11209979_11210217 40.00 NA NA NA NA NA NA 35.00 31.82 NA NA 51.16 NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 45.83 NA NA NA 36.00 NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Eps-15,I_chr2R_20660319_20660496 chr2R - chr2R_20662337_20662430 chr2R_20662336_20662337;chr2R_20662430_20662431 chr2R_20662100_20662336;chr2R_20662431_20662754 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 1.49 0.00 0.00 2.38 NA 0.00 0.00 0.00 0.00 1.28 1.15 0.00 5.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG8632,CG8646 chr2R + chr2R_8540631_8540686 chr2R_8540633_8540686 chr2R_8540687_8541563;chr2R_8540362_8540630 96.15 96.43 100.00 96.08 NA 95.65 93.55 100.00 96.36 NA NA 96.15 NA 88.00 100.00 100.00 NA 96.97 100.00 93.33 100.00 96.43 94.74 97.50 92.86 100.00 95.56 NA 92.31 100.00 93.33 100.00 96.00 100.00 NA 96.43 96.97 100.00 89.74 98.73 92.11 97.62 95.83 95.12 95.00 95.83 93.55 98.33 96.36 95.00 93.94 91.30 95.24 100.00 93.75 100.00 NA 96.15 K jcn_only_AA CG34413,RI_chr2R_20769295_20770153,I_chr2R_20771136_20772048,I_chr2R_20773500_20774745 chr2R + chr2R_20769150_20770158 chr2R_20769150_20770153 chr2R_20769141_20769149;chr2R_20770159_20770253 91.67 92.22 95.70 89.83 87.79 92.13 92.93 90.20 89.05 93.55 90.70 89.60 89.74 94.25 94.59 92.31 93.64 91.67 88.64 90.58 90.91 92.50 90.41 92.92 94.12 94.62 94.44 95.65 90.57 89.47 93.40 NA 92.31 92.03 85.71 90.91 94.04 91.25 90.74 90.26 NA 92.24 93.75 91.04 94.29 87.50 97.14 94.44 91.54 91.67 88.57 86.84 91.84 100.00 90.79 86.54 90.74 NA K intron_retention sprt,CG30022 chr2R - chr2R_7275414_7275504 chr2R_7275413_7275414;chr2R_7275504_7275505 chr2R_7275345_7275413;chr2R_7275505_7275573 0.00 0.00 0.00 3.39 0.00 0.00 1.21 2.63 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 1.82 1.31 2.82 0.00 1.83 1.79 2.63 2.87 1.17 3.37 3.26 1.33 1.20 1.18 0.00 0.00 1.68 0.00 0.00 1.57 1.47 2.46 0.00 0.00 1.00 1.64 0.00 2.99 0.00 2.44 1.88 0.00 0.00 0.00 0.00 0.00 0.00 2.70 K alternative_donor I_chr2R_17169674_17170491,CG10069,I_chr2R_17169897_17170495,I_chr2R_17170432_17170491,I_chr2R_17171765_17171886 chr2R + chr2R_17170432_17170491;chr2R_17170336_17170491;chr2R_17170070_17170491;chr2R_17169897_17170491 chr2R_17169885_17170491 chr2R_17170492_17170591;chr2R_17169869_17169884 1.79 0.00 3.03 4.76 0.00 0.00 2.70 2.27 1.96 0.00 0.00 1.92 3.70 0.00 6.67 2.38 3.85 4.35 0.00 1.56 0.00 1.89 2.78 0.00 0.00 3.12 6.06 0.00 0.00 0.00 2.78 4.17 0.00 1.85 0.00 4.55 2.22 0.00 4.44 4.23 3.45 1.79 0.00 3.85 0.00 0.00 0.00 0.00 1.82 4.76 0.00 0.00 4.55 0.00 2.94 0.00 0.00 0.00 K intron_retention CG32772,CG6903 chrX + chrX_4808046_4808117 chrX_4808045_4808046;chrX_4808117_4808118 chrX_4807879_4808045;chrX_4808118_4808994 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 96.43 NA NA 100.00 NA NA 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 95.65 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Akt1 chr3R + chr3R_11926502_11926621;chr3R_11924988_11926621;chr3R_11925318_11926621;chr3R_11925383_11926621 chr3R_11925014_11926621 chr3R_11926622_11926719;chr3R_11924974_11924987 7.69 NA NA 10.00 NA NA 4.00 13.16 10.71 NA NA 3.70 NA NA NA 10.00 NA NA NA 7.69 NA 12.50 0.00 8.70 NA NA 0.00 NA 0.00 NA NA NA 17.65 16.67 NA NA 3.85 NA NA 0.00 NA 12.50 NA NA NA NA NA NA 0.00 NA 6.45 NA NA NA NA NA NA NA K intron_retention CG5147 chr3L - chr3L_18102201_18102259 chr3L_18102200_18102201;chr3L_18102259_18102260 chr3L_18101821_18102200;chr3L_18102260_18102778 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor msn,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586265,I_chr3L_2585739_2586413 chr3L - chr3L_2585739_2586265;chr3L_2585739_2586402;chr3L_2585739_2586036 chr3L_2585739_2586413 chr3L_2585639_2585738;chr3L_2586414_2586502 0.00 0.00 0.00 0.88 2.08 0.00 0.00 0.73 0.66 0.00 1.39 0.00 0.00 1.09 1.01 0.65 0.00 1.33 1.11 0.00 0.00 1.14 1.06 1.72 0.00 1.14 0.00 0.00 1.03 0.00 0.89 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 2.21 1.54 0.64 1.49 0.00 0.00 0.00 2.70 0.66 1.71 4.17 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 K intron_retention Rph,I_chrX_10647710_10648325,RI_chrX_10648938_10649003,RI_chrX_10649048_10651427 chrX - chrX_10647710_10651427 chrX_10647709_10647710;chrX_10651427_10651428 chrX_10647610_10647709;chrX_10651428_10651527 0.00 NA NA NA NA 0.00 0.00 0.00 6.45 NA NA 6.25 6.67 NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA 4.55 NA 0.00 NA NA NA NA 4.00 NA NA NA NA NA 0.00 NA NA NA K jcn_only_AD CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3081761_3083732 chr3L_3082228_3083732 chr3L_3083733_3083809;chr3L_3081699_3081760 81.40 82.14 80.00 89.39 NA 85.00 93.88 69.81 85.19 NA NA 81.40 60.00 NA 79.41 92.11 90.91 90.91 84.21 77.27 85.71 76.19 66.67 80.00 NA 96.97 80.00 NA NA NA 96.43 NA NA 77.19 NA NA 79.31 95.00 61.90 85.71 NA 85.19 83.33 60.00 NA NA 70.83 58.33 85.42 NA 79.07 NA NA NA 80.00 NA NA NA K multi_cassette capu,I_chr2L_3884519_3902594,I_chr2L_3887800_3888648,I_chr2L_3887896_3888648 chr2L - chr2L_3879068_3893261 chr2L_3879068_3884035;chr2L_3884519_3886983;chr2L_3887800_3893261 chr2L_3884036_3884518;chr2L_3886984_3887799 chr2L_3878895_3879067;chr2L_3893262_3893604 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG31224 chr3R - chr3R_14482908_14484481 chr3R_14482908_14482961 chr3R_14481887_14482907;chr3R_14484482_14485019 20.00 20.00 10.00 42.86 25.00 16.67 50.00 33.33 25.00 NA 33.33 25.00 10.00 12.50 40.00 50.00 20.00 33.33 50.00 25.00 20.00 66.67 6.67 25.00 0.00 12.50 30.00 42.86 75.00 16.67 22.22 NA 30.00 25.00 12.50 6.67 9.09 33.33 10.00 9.09 50.00 23.08 20.00 9.09 NA 20.00 12.50 20.00 36.36 NA 18.18 14.29 NA NA 18.18 NA 20.00 20.00 K cassette pan chr4 + chr4_106426_107642 chr4_106426_106478;chr4_106560_107642 chr4_106479_106559 chr4_106338_106425;chr4_107643_107792 100.00 95.00 100.00 98.46 100.00 100.00 100.00 98.67 100.00 100.00 100.00 98.28 96.88 100.00 100.00 98.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 87.10 100.00 100.00 93.33 100.00 100.00 100.00 97.30 98.44 100.00 100.00 96.43 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette Hsc70Cb chr3L + chr3L_14033695_14035258 chr3L_14033695_14034526;chr3L_14034623_14035258 chr3L_14034527_14034622 chr3L_14033164_14033694;chr3L_14035259_14035459 4.05 4.07 6.18 1.93 2.35 4.43 1.20 4.68 3.51 3.92 3.83 2.97 2.59 3.57 2.67 3.69 2.86 10.87 3.62 5.99 3.55 2.78 3.59 4.29 5.41 3.85 5.83 7.73 3.64 4.84 4.19 3.31 4.25 4.32 4.32 5.42 4.05 4.57 6.70 3.40 6.88 3.98 2.56 3.92 3.48 5.21 4.59 5.23 4.91 3.51 4.80 4.57 2.35 4.30 2.98 3.72 4.07 6.25 K intron_retention CG7530,I_chr3R_10553050_10555615,eff chr3R - chr3R_10553050_10554503 chr3R_10553049_10553050;chr3R_10554503_10554504 chr3R_10552950_10553049;chr3R_10554504_10554544 0.00 0.00 0.00 0.00 0.00 0.00 7.69 4.44 6.78 NA 0.00 2.63 5.56 0.00 0.00 5.26 0.00 4.76 0.00 2.33 0.00 NA 2.94 0.00 0.00 0.00 4.35 NA NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 2.38 4.35 0.00 NA 7.69 NA 0.00 2.70 NA 2.70 0.00 NA NA 3.12 0.00 0.00 NA K intron_retention vsg,I_chr3L_9707724_9708265 chr3L + chr3L_9707724_9708846 chr3L_9707723_9707724;chr3L_9708846_9708847 chr3L_9707624_9707723;chr3L_9708847_9710788 0.00 0.18 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.14 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.23 0.00 0.19 0.00 0.51 0.48 0.00 0.00 0.00 0.19 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette Tif-IA,RI_chr2L_22250854_22257652 chr2L + chr2L_22250854_22257652 chr2L_22250854_22253193;chr2L_22253333_22253386;chr2L_22253686_22253745;chr2L_22253922_22257652 chr2L_22253194_22253332;chr2L_22253387_22253685;chr2L_22253746_22253921 chr2L_22250754_22250853;chr2L_22257653_22257752 92.59 89.74 88.37 55.10 97.14 89.47 91.25 98.73 90.00 100.00 100.00 92.54 79.55 91.67 90.70 90.79 91.49 81.08 89.83 98.65 100.00 96.43 97.67 90.70 80.77 60.78 95.56 100.00 55.56 94.29 91.49 96.97 89.19 95.06 96.30 93.94 96.67 92.59 96.43 93.10 89.74 96.15 86.36 83.64 96.97 96.36 100.00 89.58 91.46 97.14 97.50 91.67 95.65 95.83 94.83 100.00 91.49 91.67 K intron_retention I_chr2R_16518342_16520460,I_chr2R_16518620_16518916,RI_chr2R_16520388_16520855,rig chr2R - chr2R_16522628_16522684 chr2R_16522627_16522628;chr2R_16522684_16522685 chr2R_16522462_16522627;chr2R_16522685_16523577 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 NA 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K alternative_donor Syx5,fzy chr2L + chr2L_16306959_16307482 chr2L_16307390_16307482 chr2L_16307483_16307526;chr2L_16306941_16306958 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 K intron_retention spin,I_chr2R_12013288_12013847 chr2R + chr2R_12019405_12019813 chr2R_12019404_12019405;chr2R_12019813_12019814 chr2R_12019047_12019404;chr2R_12019814_12020063 1.41 1.41 2.01 5.07 1.49 0.87 2.28 2.05 1.41 0.00 3.03 1.92 1.41 2.50 0.66 2.07 1.71 0.84 1.42 1.48 1.31 3.16 1.83 1.72 1.02 1.83 2.37 3.35 2.12 0.43 1.56 0.89 0.72 0.55 0.89 1.88 1.21 2.22 1.79 1.41 0.00 0.86 0.00 1.36 0.55 0.68 0.86 0.74 1.81 5.20 1.56 0.70 0.95 0.00 0.71 1.42 1.78 0.43 K jcn_only_AD Vha16,I_chr2R_2519645_2520499,RI_chr2R_2519646_2519840,I_chr2R_2519646_2520292,I_chr2R_2519646_2520298,I_chr2R_2519775_2520499 chr2R - chr2R_2519646_2519828 chr2R_2519646_2519810 chr2R_2519546_2519645;chr2R_2519829_2519868 26.03 23.14 22.37 24.82 22.22 23.58 21.58 29.98 24.53 30.57 22.22 22.59 27.74 22.77 22.35 32.35 22.80 24.41 23.78 29.41 24.02 26.42 28.70 26.18 26.00 27.71 34.96 34.34 37.06 24.76 28.54 31.16 31.39 26.03 27.86 35.63 33.52 26.94 26.30 44.25 31.08 22.77 21.10 27.27 22.53 32.57 15.98 28.69 22.75 24.79 26.22 26.98 23.20 29.17 25.23 25.56 17.20 17.91 K intron_retention I_chr2R_17169674_17170491,CG10069,I_chr2R_17169897_17170495,I_chr2R_17170432_17170491,I_chr2R_17171765_17171886 chr2R + chr2R_17170336_17170491 chr2R_17170335_17170336;chr2R_17170491_17170492 chr2R_17170332_17170335;chr2R_17170492_17170591 21.43 NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 21.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention beta4GalNAcTA chr2R + chr2R_10147921_10147992 chr2R_10147920_10147921;chr2R_10147992_10147993 chr2R_10147702_10147920;chr2R_10147993_10148656 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 2.78 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 K intron_retention CG7843,I_chr2R_1972736_1972822 chr2R - chr2R_1968540_1969240 chr2R_1968539_1968540;chr2R_1969240_1969241 chr2R_1968340_1968539;chr2R_1969241_1969345 9.64 5.00 16.13 12.90 6.90 8.00 15.07 10.87 11.76 8.70 13.33 12.28 15.15 14.29 2.86 28.00 9.38 17.86 12.50 9.64 7.41 6.25 10.34 7.14 12.77 13.33 16.33 15.79 0.00 3.92 9.80 1.69 5.77 13.95 17.14 4.65 4.76 8.89 3.85 10.00 4.44 15.38 14.29 14.89 2.86 7.14 6.85 2.78 14.29 9.09 10.00 14.81 5.88 8.33 16.67 7.14 9.59 7.00 K cassette Psa,I_chr3L_1518053_1518213 chr3L + chr3L_1517756_1518176 chr3L_1517756_1517986;chr3L_1518053_1518176 chr3L_1517987_1518052 chr3L_1517586_1517755;chr3L_1518177_1518796 25.00 NA 23.53 15.38 NA NA 25.00 18.18 16.67 NA NA 33.33 NA NA NA 21.43 14.29 NA 20.00 20.00 NA NA 35.71 40.00 NA NA NA NA NA NA 28.57 NA 18.18 30.00 36.36 NA NA NA NA 46.15 NA 16.67 NA NA NA 27.27 NA 29.63 22.22 NA 30.00 NA NA NA NA NA NA 33.33 K alternative_last_exon CG7971,I_chr3L_1659363_1659845,I_chr3L_1667736_1667806 chr3L - chr3L_1659991_1661226 chr3L_1661166_1661226 chr3L_1659846_1659990 chr3L_1660590_1661165 chr3L_1661227_1661592 95.00 92.31 92.86 95.24 90.00 91.67 95.00 95.00 96.55 87.50 93.33 100.00 100.00 90.91 94.12 100.00 88.89 93.33 93.33 96.77 100.00 87.50 100.00 100.00 100.00 92.31 92.86 100.00 85.71 100.00 100.00 100.00 94.12 95.00 90.00 94.12 96.00 100.00 93.75 100.00 100.00 100.00 75.00 94.12 92.86 92.31 100.00 91.67 96.15 90.00 100.00 100.00 100.00 100.00 100.00 92.31 93.75 100.00 K intron_retention Tm1,I_chr3R_11120969_11125831,I_chr3R_11121267_11124998,RI_chr3R_11125070_11125831,I_chr3R_11125070_11126469 chr3R + chr3R_11122431_11125831 chr3R_11122430_11122431;chr3R_11125831_11125832 chr3R_11122313_11122430;chr3R_11125832_11125902 94.74 92.59 95.00 82.22 100.00 87.50 95.83 82.35 93.94 91.67 95.00 83.67 100.00 91.30 86.96 94.59 93.33 84.62 85.19 86.27 94.12 96.15 97.37 91.43 93.33 89.29 85.00 95.45 78.26 95.83 96.43 93.33 96.77 97.44 96.00 85.71 97.06 96.67 92.59 94.87 85.71 91.49 94.74 97.06 86.36 96.43 96.00 95.24 98.21 88.89 100.00 92.31 94.74 100.00 100.00 96.30 98.31 97.67 K intron_retention kuz,E_chr2L_13550294_13551106,CE_chr2L_13558833_13594255,I_chr2L_13636762_13637287 chr2L + chr2L_13634474_13634543 chr2L_13634473_13634474;chr2L_13634543_13634544 chr2L_13634239_13634473;chr2L_13634544_13635590 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Hairless chr3R + chr3R_16447850_16448305 chr3R_16447849_16447850;chr3R_16448305_16448306 chr3R_16447843_16447849;chr3R_16448306_16449020 83.66 71.43 84.21 84.62 78.57 87.50 81.25 85.71 76.92 76.47 69.23 92.31 76.19 87.50 94.12 92.31 72.22 84.62 93.33 83.33 73.33 75.00 75.00 78.95 92.86 75.00 92.00 75.00 92.86 86.67 93.75 NA 83.33 75.76 84.21 87.50 77.78 81.82 73.68 91.67 NA 77.42 100.00 65.22 88.89 71.43 57.14 90.91 96.30 100.00 84.00 94.12 70.00 NA 79.17 81.82 87.50 90.00 K alternative_donor I_chr3L_20306985_20307177,CG6680 chr3L + chr3L_20310517_20311483 chr3L_20310889_20311483 chr3L_20311484_20311913;chr3L_20310328_20310516 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 93.75 97.78 100.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 96.30 100.00 100.00 96.15 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 95.65 100.00 100.00 96.15 100.00 100.00 100.00 97.22 95.65 100.00 94.74 100.00 100.00 100.00 100.00 K intron_retention Sac1,I_chr3L_1248185_1248255,E_chr3L_1248342_1249814 chr3L + chr3L_1248189_1248255 chr3L_1248188_1248189;chr3L_1248255_1248256 chr3L_1247990_1248188;chr3L_1248256_1248341 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 3.66 14.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.72 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor None chrU + chrU_1178980_1179256 chrU_1179201_1179256 97.14 98.69 96.77 95.45 99.17 97.37 97.62 97.94 96.19 98.75 93.33 96.88 97.67 97.13 97.85 97.00 97.27 98.41 96.96 96.27 98.29 95.31 94.92 96.79 95.15 94.04 97.89 98.08 97.35 98.13 96.81 91.95 97.14 98.28 97.17 99.07 97.64 96.23 97.83 97.18 95.29 95.93 96.41 97.60 92.22 95.12 98.58 99.27 97.14 93.52 100.00 94.48 95.88 93.94 96.33 97.78 98.00 97.65 K intron_retention EI_chrX_20347839_20348139,DMG4-MB6.chrX.37.001,RI_chrX_20380495_20381649 chrX - chrX_20380495_20381545 chrX_20380494_20380495;chrX_20381545_20381546 chrX_20380395_20380494;chrX_20381546_20381598 34.52 NA NA 15.00 NA NA 50.00 22.73 26.09 NA NA 13.04 NA NA NA 30.00 NA NA 20.00 35.71 NA 40.00 33.33 NA NA NA NA NA 88.89 NA NA NA 41.67 21.43 NA NA NA NA NA NA 45.45 20.00 NA NA NA 44.44 NA 42.86 21.43 NA NA NA NA NA NA NA 53.85 50.00 K alternative_donor vig chr2L - chr2L_15067690_15067915;chr2L_15067690_15067952;chr2L_15067690_15067995;chr2L_15067690_15068029;chr2L_15067690_15067999 chr2L_15067690_15067868 chr2L_15066937_15067689;chr2L_15068030_15068031 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention cnn,I_chr2R_9333096_9336723,I_chr2R_9333096_9336812,CG30062,RI_chr2R_9334834_9336719,I_chr2R_9347031_9370659 chr2R - chr2R_9333096_9334636 chr2R_9333095_9333096;chr2R_9334636_9334637 chr2R_9333052_9333095;chr2R_9334637_9334681 8.00 NA NA 11.11 NA NA 13.79 10.71 20.00 0.00 NA 17.14 NA 5.00 6.67 8.33 NA NA 0.00 8.00 NA NA 6.67 4.35 0.00 5.56 10.53 21.74 20.00 13.64 5.56 NA 0.00 7.89 NA 8.33 7.41 0.00 0.00 8.16 NA 11.54 11.76 0.00 NA 9.52 NA 15.15 12.50 6.67 15.00 NA NA NA 0.00 NA NA 7.69 K jcn_only_AD lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22817658_22817713;chr2L_22817556_22817713 chr2L_22817653_22817713 chr2L_22817714_22817839;chr2L_22817553_22817555 0.00 2.50 0.00 0.00 0.00 3.23 2.35 1.28 1.87 0.00 3.85 1.01 4.29 1.79 9.26 0.86 0.00 0.00 0.00 1.37 0.00 0.00 1.59 0.00 0.00 2.50 1.61 0.00 3.03 0.00 2.38 NA NA 0.00 0.00 0.00 1.69 0.00 0.00 0.00 NA 0.00 2.17 0.00 NA 0.00 0.00 0.00 1.00 7.89 1.54 0.00 3.70 NA 3.33 0.00 0.00 2.63 K intron_retention cic chr3R + chr3R_16121848_16121921 chr3R_16121847_16121848;chr3R_16121921_16121922 chr3R_16121631_16121847;chr3R_16121922_16122221 1.33 0.00 3.61 3.37 2.44 2.27 2.04 1.48 2.41 0.00 3.64 2.42 1.33 0.00 2.08 2.99 0.00 0.00 2.35 1.83 0.00 2.40 0.00 2.11 0.00 8.43 5.45 5.26 2.11 1.23 2.70 0.00 5.41 1.64 0.00 1.94 0.00 0.00 0.00 0.00 0.00 3.21 3.08 0.00 0.00 0.00 0.00 0.00 2.48 0.00 1.03 0.00 0.00 0.00 2.22 0.00 0.00 2.94 K jcn_only_AA His4r chr3R + chr3R_10451538_10451747 chr3R_10451538_10451721 chr3R_10451469_10451537;chr3R_10451748_10451951 0.00 0.00 0.00 0.11 0.00 0.00 0.25 0.14 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.50 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.26 0.00 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.30 0.58 0.00 0.45 0.00 0.00 0.11 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.20 K intron_retention Klp10A,I_chrX_11030129_11030277,I_chrX_11030129_11030516 chrX - chrX_11030129_11030651 chrX_11030128_11030129;chrX_11030651_11030652 chrX_11030029_11030128;chrX_11030652_11030755 20.00 NA NA 0.00 NA NA 30.77 26.67 9.09 NA NA 40.00 NA 6.67 20.00 21.05 NA 7.69 NA 16.67 NA 20.00 NA NA NA NA NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA 21.43 NA NA NA NA NA NA NA NA NA K intron_retention CG5514,E_chr3R_23764745_23767416,Gp93 chr3R + chr3R_23765370_23765428 chr3R_23765369_23765370;chr3R_23765428_23765429 chr3R_23764699_23765369;chr3R_23765429_23767855 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG8677 chr2L + chr2L_21226423_21226632 chr2L_21226423_21226629 chr2L_21224696_21226422;chr2L_21226633_21228340 100.00 95.24 100.00 100.00 100.00 98.92 100.00 100.00 99.20 100.00 100.00 99.07 100.00 100.00 100.00 98.70 97.96 98.44 98.67 100.00 93.10 98.53 99.07 100.00 100.00 98.41 100.00 100.00 100.00 100.00 98.28 98.28 98.85 96.84 98.80 98.28 100.00 100.00 97.35 100.00 100.00 98.66 96.23 100.00 100.00 100.00 100.00 97.93 100.00 98.61 100.00 97.87 100.00 100.00 100.00 100.00 92.31 100.00 K alternative_acceptor Gpo-1,I_chr2R_11747621_11747699,EI_chr2R_11747445_11747699,I_chr2R_11749758_11750187,I_chr2R_11756325_11756380 chr2R - chr2R_11747621_11747699 chr2R_11747625_11747699 chr2R_11747700_11747768;chr2R_11747521_11747620 96.55 95.00 96.15 96.00 100.00 100.00 94.44 100.00 97.62 95.24 100.00 97.83 100.00 93.33 100.00 94.74 100.00 100.00 100.00 100.00 100.00 94.12 94.74 95.65 92.98 94.74 98.89 97.01 95.92 93.02 93.55 88.89 98.41 96.00 97.56 95.83 92.77 96.83 96.34 88.52 98.00 97.44 100.00 90.22 98.08 93.44 96.77 94.34 100.00 96.55 96.15 96.97 96.30 97.78 100.00 93.44 97.22 92.00 K alternative_last_exon mrt,I_chr3R_23105765_23106979,I_chr3R_23105765_23108338 chr3R - chr3R_23105765_23107474 chr3R_23107038_23107474 chr3R_23104900_23105764 chr3R_23105955_23107037 chr3R_23107475_23107541 2.50 2.08 1.85 3.92 2.50 2.44 4.17 5.17 4.17 3.57 0.00 2.27 5.56 2.78 4.08 3.92 3.70 5.26 2.70 2.94 5.26 0.00 1.49 1.79 0.00 2.38 1.89 2.50 2.38 2.63 2.17 0.00 5.56 4.17 2.38 2.50 1.15 2.04 0.00 3.08 0.00 2.91 3.23 4.55 0.00 7.41 2.00 2.08 2.97 2.27 1.67 3.03 2.17 3.70 3.57 2.33 1.85 2.56 K jcn_only_AA CG7458 chr3L + chr3L_21948960_21949479 chr3L_21948960_21949415 chr3L_21948713_21948959;chr3L_21949480_21949583 17.41 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.81 K intron_retention Xrp1,I_chr3R_14741648_14750799,I_chr3R_14750298_14750799 chr3R + chr3R_14745235_14750799 chr3R_14745234_14745235;chr3R_14750799_14750800 chr3R_14745145_14745234;chr3R_14750800_14750899 15.00 0.00 NA 18.37 NA 7.14 20.87 10.94 16.00 NA 6.25 12.20 19.23 14.29 0.00 17.39 12.50 16.67 16.00 17.95 8.33 21.05 24.24 17.65 10.34 15.00 17.02 23.61 15.15 19.35 0.00 0.00 14.29 9.09 16.00 26.32 NA NA NA 8.70 17.14 21.43 12.50 12.50 NA 15.15 0.00 16.67 11.76 9.38 19.15 11.11 NA 13.33 15.38 15.38 2.94 14.29 K alternative_donor CG12703 chrX + chrX_19645123_19645380;chrX_19645198_19645380;chrX_19645200_19645380;chrX_19645171_19645380;chrX_19644924_19645380 chrX_19645202_19645380 chrX_19645381_19645579;chrX_19644833_19644923 3.51 3.17 3.45 8.14 3.51 4.41 8.51 4.92 3.49 6.00 1.59 4.83 4.26 5.56 2.50 7.22 3.17 2.53 1.47 3.23 1.52 2.78 2.91 1.45 6.12 3.77 4.62 2.50 7.55 3.19 4.60 11.11 3.03 4.92 2.78 1.67 2.38 3.17 3.90 8.13 6.06 5.62 3.08 3.57 4.05 3.26 4.41 11.27 5.70 5.08 5.06 2.17 2.00 2.22 2.30 2.78 2.86 5.36 K intron_retention Hsc70-4,EI_chr3R_11068693_11068772 chr3R + chr3R_11068522_11070081 chr3R_11068521_11068522;chr3R_11070081_11070082 chr3R_11068453_11068521;chr3R_11070082_11072336 0.00 0.11 0.05 0.02 0.00 0.10 0.00 0.10 0.05 0.00 0.00 0.13 0.00 0.00 0.00 0.04 0.07 0.00 0.00 0.00 0.07 0.04 0.00 0.00 0.00 0.00 0.19 0.35 0.08 0.00 0.00 0.00 0.00 0.09 0.00 0.03 0.00 0.00 0.00 0.00 0.05 0.03 0.00 0.00 0.00 0.03 0.00 0.01 0.06 0.00 0.00 0.00 0.06 0.00 0.05 0.11 0.00 0.01 K alternative_acceptor CG10979,RI_chr3R_1621781_1621856 chr3R + chr3R_1621781_1622150 chr3R_1621781_1621856 chr3R_1621681_1621780;chr3R_1622151_1625521 0.00 0.00 0.00 0.00 0.00 0.00 3.92 3.57 3.03 0.00 3.45 0.00 7.14 0.00 0.00 3.23 0.00 4.76 0.00 4.00 0.00 6.90 0.00 2.78 5.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 2.13 3.57 0.00 2.17 0.00 0.00 0.00 0.00 0.00 5.88 2.94 6.67 5.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 5.88 3.45 3.70 0.00 0.00 K alternative_donor Atg18,I_chr3L_8182683_8182941 chr3L + chr3L_8180294_8180578;chr3L_8180319_8180578 chr3L_8180503_8180578 chr3L_8180579_8180676;chr3L_8180118_8180293 7.45 8.47 6.67 14.29 10.20 10.00 15.00 11.32 9.92 3.70 2.56 10.20 8.00 8.00 10.67 8.82 8.20 10.42 6.45 7.69 1.69 9.35 6.45 8.22 11.11 9.09 9.86 7.89 11.11 4.41 5.13 3.12 3.54 6.90 7.69 10.64 4.55 3.75 7.14 7.45 7.41 8.94 11.63 4.00 1.82 4.35 6.06 3.12 7.14 6.00 7.25 8.82 9.52 3.92 5.95 3.92 6.49 4.35 K jcn_only_AD endos,I_chr3L_14024099_14024488,I_chr3L_14024103_14024158,I_chr3L_14024103_14024546,I_chr3L_14024496_14024546 chr3L - chr3L_14024103_14024488;chr3L_14024103_14024546;chr3L_14024103_14024407 chr3L_14024103_14024158 chr3L_14024003_14024102;chr3L_14024547_14024588 0.60 0.66 1.35 0.44 0.76 0.00 0.56 0.42 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.68 0.00 4.24 0.71 0.54 0.00 0.00 0.00 0.83 0.00 1.54 0.00 0.60 0.50 0.00 0.92 1.02 0.76 1.89 1.35 0.36 1.46 0.66 0.72 0.82 1.72 1.28 0.81 0.48 0.35 0.61 0.82 2.11 0.00 0.00 0.00 3.36 0.64 1.05 K multi_cassette unk,I_chr3R_18980963_18981530 chr3R - chr3R_18980497_18981530 chr3R_18980497_18980566;chr3R_18980693_18980853;chr3R_18980963_18981161;chr3R_18981272_18981530 chr3R_18980567_18980692;chr3R_18980854_18980962;chr3R_18981162_18981271 chr3R_18979916_18980496;chr3R_18981531_18981630 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 K intron_retention CG9904 chrX + chrX_2514627_2514857 chrX_2514626_2514627;chrX_2514857_2514858 chrX_2514027_2514626;chrX_2514858_2515345 1.52 3.85 1.79 0.00 0.00 0.00 3.57 1.52 3.70 0.00 2.78 3.49 3.57 2.86 1.69 0.00 0.00 3.70 0.00 3.70 0.00 6.33 3.45 3.28 5.71 0.00 8.00 8.33 7.84 0.00 0.00 0.00 2.94 1.72 2.63 6.67 0.00 2.27 0.00 2.53 0.00 1.04 0.00 0.00 0.00 1.43 0.00 0.00 2.44 0.00 4.92 0.00 0.00 0.00 4.65 0.00 2.22 0.00 N cassette CG11357,C_chr3L_4563905_4578759 chr3L + chr3L_4542908_4552104 chr3L_4542908_4551001;chr3L_4551941_4552104 chr3L_4551002_4551940 chr3L_4542859_4542907;chr3L_4552105_4553455 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Arf79F,I_chr3L_22863166_22863946,I_chr3L_22863166_22864419,RI_chr3L_22863251_22863389,RI_chr3L_22863251_22863952,I_chr3L_22863251_22864009,I_chr3L_22863251_22864188,I_chr3L_22863251_22864501,I_chr3L_22863251_22864629,RI_chr3L_22863251_22864763,I_chr3L_22863251_22864866,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22863166_22865156 chr3L_22863251_22865156 chr3L_22865157_22865157;chr3L_22863151_22863165 100.00 99.43 100.00 100.00 100.00 99.32 100.00 99.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.49 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.59 100.00 99.69 100.00 100.00 100.00 100.00 99.59 100.00 100.00 100.00 99.54 100.00 100.00 100.00 100.00 99.44 100.00 99.62 K intron_retention CG15908_CG9410,CG15908,CG9410 chr2R + chr2R_2556730_2556834 chr2R_2556729_2556730;chr2R_2556834_2556835 chr2R_2556598_2556729;chr2R_2556835_2556939 14.29 11.76 NA 9.09 NA NA 16.67 NA 21.05 NA NA 12.00 NA NA 0.00 5.56 NA NA NA 6.67 NA 15.38 NA 13.33 NA NA 25.00 24.00 43.75 NA 18.75 NA NA 6.67 NA NA NA NA 25.00 16.00 23.08 14.29 NA NA NA 7.69 NA 19.05 22.22 25.00 6.67 14.29 NA NA 0.00 11.76 NA 5.56 K intron_retention Ubqn chrX + chrX_19578130_19578472 chrX_19578129_19578130;chrX_19578472_19578473 chrX_19577799_19578129;chrX_19578473_19579943 0.00 0.00 2.20 0.00 0.00 0.00 0.62 0.00 0.93 2.38 0.00 1.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 5.13 1.77 0.00 0.00 0.00 0.00 0.00 8.00 0.00 2.40 0.00 0.00 1.29 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpS18,CG8908,EI_chr2R_16151918_16151997,I_chr2R_16151918_16152036,I_chr2R_16151938_16152065,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151938_16151997 chr2R_16151937_16151938;chr2R_16151997_16151998 chr2R_16151852_16151937;chr2R_16151998_16152066 0.03 0.01 0.03 0.02 0.00 0.00 0.04 0.03 0.04 0.06 0.00 0.06 0.02 0.00 0.00 0.00 0.04 0.02 0.00 0.04 0.04 0.24 0.01 0.03 0.04 0.00 0.11 0.32 0.42 0.00 0.02 0.03 0.03 0.00 0.00 0.04 0.00 0.03 0.06 0.06 0.00 0.03 0.04 0.03 0.00 0.05 0.02 0.03 0.07 0.03 0.05 0.05 0.02 0.01 0.01 0.04 0.01 0.03 K intron_retention CG8979 chr2R - chr2R_7855737_7855788 chr2R_7855736_7855737;chr2R_7855788_7855789 chr2R_7855342_7855736;chr2R_7855789_7855984 4.67 3.76 3.59 5.91 4.24 2.88 5.12 3.06 3.78 3.54 4.24 4.80 4.67 7.14 3.53 3.91 1.80 4.51 5.97 5.25 4.84 5.06 4.17 2.69 8.62 7.41 10.00 11.19 5.70 3.85 6.88 5.19 4.86 6.70 5.51 7.08 2.15 2.72 4.17 3.57 9.87 3.37 2.97 2.05 8.06 5.88 2.68 6.82 5.00 6.47 3.60 1.47 3.28 2.61 6.15 5.26 3.24 4.95 K intron_retention CG1129 chr3R + chr3R_639102_639240 chr3R_639101_639102;chr3R_639240_639241 chr3R_639076_639101;chr3R_639241_639330 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 100.00 100.00 98.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor l(3)82Fd,I_chr3R_1121686_1121886,I_chr3R_1147660_1148709 chr3R - chr3R_1121683_1121868 chr3R_1121686_1121868 chr3R_1121869_1122357;chr3R_1121586_1121682 96.15 100.00 94.74 96.15 100.00 89.47 96.15 94.87 98.11 100.00 95.00 95.45 95.00 100.00 96.67 92.86 95.83 100.00 100.00 97.92 94.44 100.00 96.15 100.00 84.62 96.00 100.00 88.89 91.67 93.75 94.12 90.00 100.00 97.22 91.67 100.00 100.00 96.00 96.43 96.55 90.91 97.96 95.00 100.00 100.00 100.00 100.00 94.44 95.56 94.12 93.33 94.74 84.62 90.91 100.00 100.00 93.33 100.00 K jcn_only_AD CG4699 chr3R + chr3R_11624200_11624442;chr3R_11624133_11624442;chr3R_11624190_11624442 chr3R_11624127_11624442 chr3R_11624443_11624758;chr3R_11623809_11624126 16.43 15.89 24.19 36.67 35.09 22.95 13.79 19.51 16.79 17.27 23.21 14.60 12.50 23.53 21.52 23.94 19.61 30.95 24.53 22.93 21.62 11.89 14.60 14.81 13.27 13.11 9.68 16.28 14.75 12.64 21.21 25.51 24.55 26.60 13.79 16.23 14.85 12.88 18.30 2.74 13.56 20.97 12.50 18.18 23.14 14.05 6.62 24.77 22.94 12.64 8.05 11.24 12.93 9.65 20.00 16.43 15.91 24.44 K alternative_donor l(2)k01209,I_chr2R_13308079_13310771,I_chr2R_13309452_13310771,RI_chr2R_13310877_13311160 chr2R + chr2R_13309452_13311160;chr2R_13308486_13311160;chr2R_13308079_13311160 chr2R_13309417_13311160 chr2R_13311161_13311260;chr2R_13307979_13308078 1.82 1.54 1.75 1.45 0.00 2.00 1.15 0.00 0.90 2.63 2.44 1.96 0.00 2.38 1.82 1.22 2.70 2.13 2.04 0.79 2.17 3.85 0.85 2.33 1.47 2.17 1.02 3.23 1.33 1.32 8.62 1.92 2.75 1.20 0.00 2.60 1.09 2.50 2.08 9.00 1.32 3.19 2.86 2.25 1.45 1.33 1.69 2.82 1.08 1.45 0.77 1.96 2.00 1.96 1.75 1.52 1.47 4.17 K jcn_only_AA CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_243585_244182;chr4_243673_244182;chr4_243657_244182 chr4_243639_244182 chr4_244183_244282;chr4_243557_243584 97.01 100.00 94.59 98.70 94.87 100.00 100.00 95.05 97.78 NA NA 94.57 95.52 100.00 100.00 96.67 93.48 NA 97.01 96.77 96.15 84.85 96.43 97.06 NA 100.00 97.56 NA NA 100.00 92.78 90.00 NA 97.06 96.00 NA NA NA NA 100.00 NA 97.59 98.04 92.59 NA 96.43 100.00 NA 97.62 100.00 96.49 NA NA 100.00 96.43 95.45 97.06 86.36 K intron_retention sd,noncoding_23930,RI_chrX_15706472_15707633,RI_chrX_15706568_15707633 chrX + chrX_15706564_15707584 chrX_15706563_15706564;chrX_15707584_15707585 chrX_15706468_15706563;chrX_15707585_15707635 100.00 NA NA 100.00 NA NA 100.00 92.31 100.00 NA NA 100.00 NA NA NA 100.00 90.00 NA 100.00 100.00 NA 100.00 NA NA 100.00 NA 90.00 NA 100.00 100.00 100.00 NA 100.00 93.75 NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA NA NA NA 93.33 100.00 NA NA NA NA NA 100.00 NA NA 100.00 K alternative_donor chico chr2L - chr2L_10246040_10247024;chr2L_10246040_10246755;chr2L_10246040_10246867;chr2L_10246040_10246899 chr2L_10246040_10246184 chr2L_10245878_10246039;chr2L_10247025_10247051 9.09 5.56 7.69 6.45 16.67 11.11 10.34 8.33 10.87 12.50 7.69 10.53 13.64 13.04 4.17 9.30 5.26 5.88 15.38 7.55 11.11 25.00 12.50 12.50 7.14 5.26 15.79 10.00 5.56 12.50 10.71 5.88 4.76 11.43 10.00 11.76 3.70 7.14 9.09 6.67 0.00 10.81 5.88 10.34 7.14 7.14 11.11 4.00 9.76 8.33 16.67 9.09 0.00 16.67 6.45 9.09 8.33 4.17 K alternative_donor opa1-like,I_chr2R_10119470_10120234,I_chr2R_10121848_10121900,I_chr2R_10122128_10122197,I_chr2R_10122334_10122393 chr2R - chr2R_10119470_10120234;chr2R_10119470_10120220 chr2R_10119470_10120229 chr2R_10119370_10119469;chr2R_10120235_10120334 70.21 66.67 67.44 61.45 67.35 63.16 63.38 65.71 70.59 78.95 57.14 71.79 79.49 75.00 70.91 65.96 71.05 76.09 68.75 71.26 66.67 67.24 72.60 72.46 70.21 66.67 59.32 65.00 66.00 76.92 71.88 68.75 70.27 71.64 75.00 60.00 66.67 63.46 67.61 33.93 60.42 71.28 80.95 71.88 78.12 75.00 71.43 70.97 74.42 72.86 72.86 67.50 66.67 60.53 73.21 64.29 67.27 81.25 K jcn_only_AD CG2818 chr2L + chr2L_3714492_3714646;chr2L_3714574_3714646 chr2L_3714584_3714646 chr2L_3714647_3716104;chr2L_3714467_3714491 24.66 34.78 31.82 34.62 NA NA 43.33 43.48 28.26 NA NA 19.23 NA 20.00 36.36 13.04 NA NA 43.48 18.75 NA 11.76 18.42 20.69 4.55 NA 11.11 30.00 NA 25.00 60.00 NA 7.41 28.12 NA NA 28.12 10.71 29.17 31.03 NA 18.00 NA 18.18 NA NA NA NA 24.32 NA 20.00 13.64 NA NA 54.17 NA 28.00 16.67 K intron_retention I_chr2R_401246_447865,Stlk,CREI_chr2R_434560_435506,noncoding_4394 chr2R + chr2R_434560_447865 chr2R_434559_434560;chr2R_447865_447866 chr2R_434460_434559;chr2R_447866_447950 2.94 NA NA 11.76 NA NA 2.94 16.67 3.57 NA NA 4.35 10.53 NA NA 11.76 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 4.35 NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA 6.67 K jcn_only_AA ftz-f1,CEI_chr3L_18765465_18790636,I_chr3L_18790575_18790636 chr3L - chr3L_18756963_18790636;chr3L_18748974_18790636 chr3L_18790575_18790636 chr3L_18790637_18790736 0.00 0.00 0.00 2.70 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 1.61 4.55 2.94 0.00 0.00 0.00 4.35 0.00 0.00 2.78 5.13 0.00 NA 2.27 0.00 0.00 0.00 1.05 0.00 0.00 0.00 NA 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.00 2.70 0.00 NA NA 0.00 6.25 NA 0.00 K alternative_donor CG8635 chr2R - chr2R_4519012_4519137 chr2R_4519012_4519109 chr2R_4518577_4519011;chr2R_4519138_4519178 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 1.15 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 1.82 0.00 0.00 2.38 4.35 0.00 1.82 2.70 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 1.06 0.00 0.00 0.00 1.67 0.00 0.95 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1815,I_chr3R_27501104_27501176,I_chr3R_27503042_27503103 chr3R + chr3R_27502890_27502956 chr3R_27502889_27502890;chr3R_27502956_27502957 chr3R_27502023_27502889;chr3R_27502957_27503041 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.36 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.42 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD kay,E_chr3R_25616137_25617114 chr3R + chr3R_25616577_25617114;chr3R_25616533_25617114 chr3R_25615618_25617114 chr3R_25617115_25617214;chr3R_25615520_25615617 2.78 6.25 3.57 0.00 7.69 2.44 4.48 20.31 2.63 0.00 7.14 1.80 14.93 2.78 4.55 0.00 2.44 NA 13.89 1.80 3.33 7.95 0.00 2.04 0.00 3.33 0.00 1.22 1.41 0.00 6.45 NA 0.00 0.00 NA 1.10 0.00 0.00 0.00 3.70 NA 7.59 4.65 6.67 0.00 7.41 1.89 7.89 3.17 2.00 4.55 2.94 0.00 3.57 4.44 0.00 5.66 5.00 K alternative_last_exon cryptocephal,RI_chr2L_21312044_21312124,I_chr2L_21312209_21314626 chr2L + chr2L_21312209_21318320,chr2L_21312209_21318126;chr2L_21312209_21314835 chr2L_21312209_21312283 chr2L_21318321_21318419;chr2L_21314836_21315347 chr2L_21312284_21312647 chr2L_21312125_21312208 0.40 0.26 0.48 0.84 0.40 0.18 1.57 0.63 0.86 0.20 1.02 0.72 0.63 0.85 0.41 0.98 0.48 0.40 0.40 0.67 0.39 0.43 0.42 0.32 0.47 0.26 0.31 0.94 1.43 0.48 0.33 0.29 0.16 0.71 0.56 0.81 0.27 0.45 0.25 0.61 0.19 0.43 0.53 0.21 0.22 0.25 0.16 0.37 0.66 0.40 0.22 0.55 0.23 0.16 0.34 0.29 0.14 0.00 K intron_retention CG4829,I_chrX_16717240_16717547 chrX + chrX_16718806_16718954 chrX_16718805_16718806;chrX_16718954_16718955 chrX_16718392_16718805;chrX_16718955_16719596 0.47 0.45 0.33 0.86 0.77 0.52 0.35 1.05 0.37 0.00 1.01 0.86 0.00 1.33 0.00 0.47 0.00 0.57 0.26 0.61 1.32 1.45 1.13 0.25 0.88 0.86 1.84 0.00 0.00 0.65 0.00 0.34 0.45 0.79 0.93 0.72 0.19 0.30 0.48 1.57 0.31 0.84 0.00 0.00 1.00 0.00 0.00 0.81 1.50 0.39 0.00 0.81 0.00 0.65 0.00 0.25 0.49 0.38 N alternative_acceptor NTPase chr2L - chr2L_2881305_2881381 chr2L_2881321_2881381 chr2L_2881382_2882511;chr2L_2881215_2881304 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 71.34 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG6689,RI_chr3R_7044164_7044221 chr3R - chr3R_7045014_7045073 chr3R_7045013_7045014;chr3R_7045073_7045074 chr3R_7044235_7045013;chr3R_7045074_7045447 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 6.25 NA 0.00 0.00 7.14 NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 K alternative_donor Mtch,RI_chr3L_184729_185366,E_chr3L_185249_186012,EI_chr3L_185308_185366,I_chr3L_185367_185925 chr3L + chr3L_184729_185366;chr3L_185308_185366 chr3L_185304_185366 chr3L_185367_185441;chr3L_184713_184728 100.00 96.15 100.00 95.12 95.65 100.00 100.00 100.00 96.49 100.00 100.00 95.35 95.45 100.00 100.00 100.00 100.00 100.00 100.00 98.08 100.00 100.00 100.00 100.00 100.00 100.00 97.06 96.00 100.00 95.65 95.00 100.00 100.00 97.62 94.74 100.00 100.00 96.55 100.00 97.96 100.00 100.00 100.00 96.30 100.00 100.00 100.00 97.50 100.00 100.00 96.97 100.00 100.00 93.75 100.00 100.00 100.00 97.78 N alternative_donor ATPsyn-Cf6,I_chr3R_19181508_19181563,I_chr3R_19181524_19181702 chr3R - chr3R_19181508_19181584;chr3R_19181508_19183230 chr3R_19181508_19181702 chr3R_19181424_19181507;chr3R_19183231_19184049 97.44 98.26 99.36 96.52 99.29 98.59 95.83 97.93 97.76 96.72 97.83 98.14 96.75 99.17 98.37 98.11 98.32 97.22 97.06 98.65 97.18 97.30 96.94 97.55 93.16 95.97 95.03 98.08 93.53 96.75 97.44 99.40 97.98 98.51 96.88 96.64 97.06 97.22 94.66 92.74 99.39 99.33 98.20 96.30 98.74 93.03 97.91 97.78 98.73 95.73 96.15 96.26 97.18 96.97 98.33 97.87 96.54 98.59 K intron_retention sgg,I_chrX_2565856_2566099,I_chrX_2566157_2566946 chrX + chrX_2567137_2567207 chrX_2567136_2567137;chrX_2567207_2567208 chrX_2566947_2567136;chrX_2567208_2567651 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention hppy,I_chr2R_15066378_15066915,I_chr2R_15105700_15106080,I_chr2R_15106144_15108248 chr2R + chr2R_15066378_15066881 chr2R_15066377_15066378;chr2R_15066881_15066882 chr2R_15066360_15066377;chr2R_15066882_15067091 46.15 NA NA NA NA NA 46.15 33.33 47.06 NA NA NA NA NA NA NA NA NA NA NA NA 50.00 46.15 NA NA NA 29.41 NA NA 53.85 NA NA NA 43.75 NA NA NA NA NA 46.15 NA 55.56 NA 42.86 NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA K intron_retention CG14435 chrX - chrX_6734295_6734396 chrX_6734294_6734295;chrX_6734396_6734397 chrX_6734147_6734294;chrX_6734397_6734467 60.00 73.08 54.29 63.89 62.96 70.83 71.43 34.21 56.76 56.25 64.00 63.16 60.00 53.85 62.86 56.25 65.38 48.00 55.56 54.84 70.37 62.00 60.42 60.00 78.95 91.67 71.43 34.78 82.14 44.83 50.00 57.89 53.85 63.89 68.42 79.41 62.26 72.73 60.00 48.98 63.64 61.54 66.67 63.64 53.85 55.56 61.54 52.38 50.00 48.00 62.16 73.33 56.52 50.00 58.82 44.00 59.38 60.00 K jcn_only_AA aPKC,I_chr2R_10833552_10833654,RI_chr2R_10849347_10850391 chr2R - chr2R_10833596_10833654;chr2R_10832733_10833654 chr2R_10833552_10833654 chr2R_10833655_10833754;chr2R_10832714_10832732 0.00 0.00 0.00 3.77 NA NA 0.00 0.00 4.26 NA NA 2.78 0.00 0.00 NA 0.00 NA 5.00 NA 1.75 0.00 1.49 0.00 2.27 0.00 NA 2.86 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 4.35 2.38 NA 3.12 NA 0.00 0.00 3.70 0.00 0.00 1.69 0.00 3.23 0.00 NA 0.00 0.00 0.00 K multi_cassette CG6767,I_chr3L_9679564_9680329,CREI_chr3L_9679564_9687332,I_chr3L_9680354_9682364,I_chr3L_9682549_9689638,I_chr3L_9682607_9687332,RE_chr3L_9679576_9682364,RI_chr3L_9679579_9682364 chr3L - chr3L_9679564_9687332 chr3L_9679564_9681630;chr3L_9681700_9682364;chr3L_9682549_9687332 chr3L_9681631_9681699;chr3L_9682365_9682548 chr3L_9679479_9679563;chr3L_9687333_9687431 69.23 75.00 85.71 70.00 66.67 80.00 60.00 87.50 63.64 60.00 75.00 66.67 100.00 83.33 83.33 85.71 80.00 60.00 87.50 78.57 100.00 NA 62.50 57.14 NA 75.00 71.43 75.00 57.14 55.56 36.36 71.43 63.64 69.23 50.00 60.00 66.67 55.56 50.00 53.33 50.00 69.23 80.00 66.67 88.89 85.71 42.86 90.00 85.71 80.00 55.56 66.67 75.00 42.86 70.00 55.56 66.67 84.21 K alternative_acceptor CG10462 chr2L - chr2L_19734281_19734469;chr2L_19734410_19734469 chr2L_19734413_19734469 chr2L_19734470_19734941;chr2L_19733639_19734280 64.38 68.75 68.57 60.66 63.64 75.00 56.06 64.47 67.39 61.54 69.57 67.14 56.76 64.86 61.54 57.33 71.79 57.58 58.70 67.16 63.64 61.29 68.89 71.05 75.00 63.64 66.67 52.38 67.86 71.43 61.54 64.00 52.08 64.38 72.41 65.85 68.75 70.83 62.50 68.63 64.10 66.18 53.85 70.59 50.00 57.89 56.25 64.29 65.79 67.57 57.89 62.96 60.00 62.50 61.70 64.52 66.67 71.15 K intron_retention CG32626 chrX - chrX_13725668_13725734 chrX_13725667_13725668;chrX_13725734_13725735 chrX_13725373_13725667;chrX_13725735_13726189 0.00 0.00 0.80 0.57 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 1.23 2.92 0.83 0.00 0.00 0.00 0.00 0.56 0.74 3.57 1.02 1.47 0.00 0.86 0.00 0.84 0.00 0.00 0.00 0.00 0.94 0.00 0.47 1.13 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.00 K cassette CG6954,I_chr3R_18492801_18502630 chr3R + chr3R_18493765_18502630 chr3R_18493765_18501669;chr3R_18501921_18502630 chr3R_18501670_18501920 chr3R_18493705_18493764;chr3R_18502631_18502730 7.69 NA NA 6.67 NA NA NA 5.88 16.67 NA NA 14.29 NA NA NA 6.67 NA NA NA 5.26 NA NA 7.69 NA NA NA NA NA NA 16.67 NA NA NA NA NA NA 27.27 NA 20.00 18.18 NA 6.67 NA NA NA NA NA 7.14 7.69 NA 15.38 NA NA NA NA NA NA NA K intron_retention CG8067 chr2R + chr2R_9871329_9871389 chr2R_9871328_9871329;chr2R_9871389_9871390 chr2R_9871150_9871328;chr2R_9871390_9871645 0.00 0.00 10.53 0.00 NA 0.00 7.69 0.00 9.68 NA 0.00 0.00 NA 6.67 0.00 0.00 NA NA 5.56 12.00 NA NA 6.67 4.76 0.00 0.00 13.64 0.00 NA NA 6.25 NA NA 0.00 NA NA 0.00 7.69 0.00 3.85 NA 10.34 NA 0.00 0.00 0.00 0.00 NA 5.71 9.52 4.76 NA NA 0.00 0.00 0.00 0.00 12.00 K jcn_only_AA sina chr3L + chr3L_16847626_16849400 chr3L_16847626_16849396 chr3L_16847120_16847625;chr3L_16849401_16851819 100.00 98.25 100.00 97.62 100.00 97.56 100.00 98.53 100.00 100.00 100.00 98.51 100.00 97.83 100.00 100.00 96.67 97.83 100.00 100.00 100.00 100.00 98.44 100.00 100.00 97.96 100.00 100.00 100.00 98.70 100.00 100.00 97.30 100.00 100.00 100.00 100.00 98.08 100.00 99.40 100.00 96.39 96.43 100.00 100.00 98.85 100.00 100.00 100.00 100.00 100.00 100.00 98.31 97.06 100.00 100.00 100.00 100.00 N alternative_last_exon Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2604280_2629140 chr3L_2612004_2629140 chr3L_2599265_2604279 chr3L_2611788_2612003 chr3L_2629141_2629526 100.00 100.00 100.00 99.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Spc105R chr3L + chr3L_20793771_20793822 chr3L_20793770_20793771;chr3L_20793822_20793823 chr3L_20793667_20793770;chr3L_20793823_20794568 0.00 0.00 NA 3.23 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 6.90 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.56 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 K intron_retention CG5080,I_chr2L_1163632_1163759 chr2L - chr2L_1161870_1161926 chr2L_1161869_1161870;chr2L_1161926_1161927 chr2L_1161290_1161869;chr2L_1161927_1162146 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.65 3.23 0.00 0.88 0.00 0.00 0.00 1.67 0.00 6.10 0.00 0.59 0.00 0.87 0.00 2.70 0.00 0.00 2.27 0.00 0.00 1.69 0.00 0.00 1.50 0.00 0.00 0.00 0.00 0.00 2.17 3.80 2.94 1.50 0.00 4.08 0.00 2.11 1.94 0.93 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG6454,I_chr3R_20175958_20178905 chr3R + chr3R_20175958_20177774 chr3R_20175958_20176448 chr3R_20175858_20175957;chr3R_20177775_20178073 0.00 0.00 2.13 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 7.04 1.64 0.00 0.00 0.00 0.00 5.41 7.14 0.00 0.00 0.00 0.00 0.00 2.27 5.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 1.49 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K alternative_donor Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3295176;chr2R_3294566_3295244;chr2R_3294566_3294634;chr2R_3294566_3294636;chr2R_3294566_3294638;chr2R_3294566_3295280;chr2R_3294566_3294714 chr2R_3294566_3294642 chr2R_3294491_3294565;chr2R_3295281_3295302 36.00 46.15 36.84 25.00 36.36 42.86 30.43 30.43 24.32 50.00 18.75 39.39 38.46 28.57 27.78 33.33 25.00 30.00 44.44 31.71 12.50 56.25 33.33 36.84 40.00 42.86 44.44 37.50 35.29 29.41 37.50 21.43 36.00 36.00 38.46 21.05 42.11 41.67 36.36 46.43 33.33 30.77 14.29 46.67 41.18 25.00 46.15 30.43 22.58 30.77 40.00 42.86 35.71 25.00 36.36 33.33 50.00 38.46 K intron_retention Unc-76,RI_chrX_1983640_1985001,I_chrX_2002576_2003165 chrX + chrX_1975693_1985001 chrX_1975692_1975693;chrX_1985001_1985002 chrX_1974778_1975692;chrX_1985002_1985100 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 K alternative_donor CG8184,I_chrX_15620707_15620769 chrX + chrX_15617113_15617265;chrX_15617191_15617265 chrX_15617158_15617265 chrX_15617266_15618411;chrX_15615597_15617112 61.54 57.14 62.96 53.66 52.17 66.67 63.89 66.67 63.77 60.98 55.00 71.67 70.59 70.37 66.67 62.07 71.43 63.16 68.00 71.13 69.23 51.24 57.75 59.18 46.88 63.16 59.09 68.97 60.87 63.89 56.00 56.67 63.33 59.65 61.70 45.95 58.97 50.00 58.73 64.00 42.31 61.04 71.43 64.71 71.43 62.22 60.00 58.12 64.00 58.82 61.36 59.26 50.00 66.67 65.52 55.00 61.54 54.24 K alternative_donor nes chr3L - chr3L_19253331_19253632;chr3L_19253331_19253636;chr3L_19253331_19253609;chr3L_19253331_19253676;chr3L_19253331_19253648;chr3L_19253331_19253745 chr3L_19253331_19253764 chr3L_19253215_19253330;chr3L_19253765_19253779 0.00 0.00 0.00 7.69 0.00 0.00 5.26 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 K intron_retention dsd,F_chr3R_23428153_23428519 chr3R - chr3R_23429210_23432490 chr3R_23429209_23429210;chr3R_23432490_23432491 chr3R_23428973_23429209;chr3R_23432491_23433110 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor ATPsyn-Cf6,I_chr3R_19181282_19181355,I_chr3R_19181508_19181563,I_chr3R_19181524_19181702 chr3R - chr3R_19181282_19181355 chr3R_19181292_19181355 chr3R_19181356_19181424;chr3R_19181216_19181281 100.00 99.75 100.00 100.00 100.00 100.00 100.00 99.76 99.83 99.43 100.00 99.80 100.00 100.00 99.71 100.00 100.00 100.00 99.62 99.86 100.00 100.00 100.00 99.79 100.00 99.61 99.74 100.00 100.00 99.66 99.73 100.00 99.70 100.00 100.00 100.00 100.00 100.00 99.84 100.00 99.67 99.83 100.00 99.68 100.00 99.84 99.82 100.00 99.76 99.73 100.00 100.00 100.00 99.62 100.00 100.00 99.85 100.00 N intron_retention Moca-cyp chr3R + chr3R_24167182_24167260 chr3R_24167181_24167182;chr3R_24167260_24167261 chr3R_24167094_24167181;chr3R_24167261_24167936 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 66.67 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA 100.00 100.00 NA 100.00 K intron_retention Eip71CD chr3L + chr3L_15505837_15505895 chr3L_15505836_15505837;chr3L_15505895_15505896 chr3L_15505771_15505836;chr3L_15505896_15505963 0.00 0.00 0.00 3.17 0.00 3.51 2.90 1.19 0.00 0.00 2.00 2.34 5.00 3.12 0.00 5.41 0.00 0.00 5.56 1.67 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 3.03 0.00 0.00 3.17 2.82 0.00 0.00 1.47 0.00 0.00 0.00 3.03 0.00 0.88 0.00 1.35 2.34 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 K intron_retention l(2)NC136,I_chr2R_1545723_1546024,RI_chr2R_1550362_1550422 chr2R - chr2R_1550344_1550422 chr2R_1550343_1550344;chr2R_1550422_1550423 chr2R_1550262_1550343;chr2R_1550423_1550522 98.91 96.43 98.51 99.11 98.15 98.41 98.91 99.14 100.00 100.00 100.00 100.00 98.15 98.48 98.57 100.00 98.18 100.00 98.63 99.05 100.00 100.00 98.77 98.46 100.00 100.00 95.83 97.92 100.00 97.83 100.00 96.88 100.00 98.98 97.96 100.00 98.28 98.31 98.46 98.11 100.00 99.12 98.25 98.75 100.00 100.00 97.14 98.89 99.19 100.00 98.65 98.39 100.00 100.00 98.73 100.00 97.50 100.00 K alternative_donor CG6695 chr3R + chr3R_20481203_20481293 chr3R_20481207_20481293 chr3R_20481294_20483132;chr3R_20480896_20481202 0.00 2.27 7.41 0.00 0.00 0.00 0.00 0.00 1.85 2.27 0.00 1.67 0.00 0.00 0.00 0.00 4.76 0.00 0.00 1.35 0.00 0.00 1.27 2.44 4.44 5.88 1.61 1.61 0.00 1.82 0.00 0.00 1.06 2.27 2.38 1.92 1.06 0.00 4.29 1.00 1.67 0.00 0.00 0.00 1.28 0.00 0.00 1.72 0.00 2.27 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 K alternative_acceptor PPP4R2r chrX + chrX_10373003_10373522 chrX_10373003_10373505 chrX_10372866_10373002;chrX_10373523_10373750 92.86 100.00 100.00 95.83 87.50 86.67 80.00 94.29 95.83 NA 90.91 92.31 83.33 100.00 100.00 89.19 83.33 92.86 93.33 83.33 100.00 90.91 100.00 100.00 NA 92.86 88.89 NA NA 100.00 95.45 NA 100.00 92.00 90.00 100.00 88.89 NA NA 92.86 100.00 86.21 93.75 87.50 100.00 88.24 81.82 81.25 96.97 100.00 92.86 NA NA NA 94.12 90.00 69.23 100.00 K intron_retention Tm1 chr3R + chr3R_11117248_11120834 chr3R_11117247_11117248;chr3R_11120834_11120835 chr3R_11117086_11117247;chr3R_11120835_11120968 4.70 4.28 4.85 8.40 4.59 5.39 16.09 4.66 5.29 4.76 7.04 5.26 4.50 8.59 7.14 8.09 6.15 6.25 7.46 4.56 5.31 3.85 4.44 3.54 4.58 5.88 6.47 8.82 4.29 5.56 8.06 3.38 3.49 5.65 3.85 9.09 3.36 4.02 2.99 5.58 2.88 5.34 5.26 4.03 0.87 3.12 3.02 5.91 4.47 3.45 4.58 5.51 4.08 3.12 5.43 4.70 4.61 3.78 K alternative_acceptor Cip4,I_chr3L_4325411_4326640,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4325384_4326983 chr3L_4325411_4326983 chr3L_4326984_4327170;chr3L_4325311_4325383 100.00 98.39 100.00 96.92 100.00 98.39 100.00 98.21 100.00 100.00 100.00 99.24 100.00 98.55 100.00 100.00 98.65 98.72 98.88 87.80 97.92 100.00 99.05 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.53 97.30 100.00 99.19 100.00 100.00 100.00 98.15 98.59 100.00 100.00 100.00 100.00 98.10 100.00 98.18 100.00 100.00 99.36 100.00 100.00 98.18 100.00 100.00 100.00 100.00 98.41 100.00 K jcn_only_AA cmet chr2L - chr2L_11261449_11261510 chr2L_11261455_11261510 chr2L_11261511_11262004;chr2L_11260848_11261448 100.00 97.96 97.56 100.00 100.00 100.00 100.00 97.80 100.00 NA 97.62 98.65 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 97.37 NA 97.22 100.00 100.00 96.23 98.11 NA NA 95.83 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 96.88 98.31 NA 96.51 100.00 100.00 100.00 100.00 100.00 100.00 98.33 100.00 100.00 K intron_retention CG8671,I_chr2L_21275807_21277205 chr2L + chr2L_21275807_21281131 chr2L_21275806_21275807;chr2L_21281131_21281132 chr2L_21275724_21275806;chr2L_21281132_21281337 0.00 0.00 0.00 13.95 0.00 0.00 10.00 8.16 6.15 6.25 0.00 8.00 0.00 0.00 0.00 1.72 0.00 0.00 8.33 0.00 3.85 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 2.56 0.00 0.00 0.00 4.08 0.00 0.00 8.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 4.65 3.77 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 2.00 K intron_retention tral,I_chr3L_12512171_12512251 chr3L + chr3L_12510160_12510515 chr3L_12510159_12510160;chr3L_12510515_12510516 chr3L_12509677_12510159;chr3L_12510516_12510526 0.00 0.00 0.00 0.00 NA NA 0.00 3.70 0.00 0.00 NA 0.00 7.69 NA 0.00 NA NA NA 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 NA 0.00 1.59 0.00 0.00 0.79 1.30 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 8.00 0.00 0.00 0.00 3.23 3.70 6.67 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention klett chrX - chrX_21499782_21501000 chrX_21499781_21499782;chrX_21501000_21501001 chrX_21499389_21499781;chrX_21501001_21501058 41.67 NA NA 28.57 NA NA 23.53 40.00 53.33 NA NA 41.67 20.00 NA NA 41.18 NA NA 54.55 41.67 NA NA 50.00 NA NA NA NA NA NA NA NA NA NA 38.89 NA 55.56 NA NA NA 58.82 NA 50.00 NA NA NA NA NA 36.36 52.94 NA NA NA NA NA NA NA NA NA K intron_retention CG14741 chr3R - chr3R_7895824_7895881 chr3R_7895823_7895824;chr3R_7895881_7895882 chr3R_7895707_7895823;chr3R_7895882_7896130 0.83 0.00 0.83 0.99 1.19 0.00 0.00 1.57 0.82 0.00 0.45 0.24 0.00 1.65 2.07 0.88 0.53 0.00 0.93 0.83 0.00 1.63 1.37 0.79 2.41 1.17 2.21 4.48 2.16 2.42 0.69 2.38 0.00 0.59 0.00 2.44 0.91 1.71 0.00 2.40 4.67 0.46 1.13 1.20 0.00 0.00 1.80 1.74 0.45 0.69 1.57 0.00 0.00 0.00 0.39 0.00 1.38 0.00 K intron_retention Stat92E,att-ORFB chr3R - chr3R_16365323_16365380 chr3R_16365322_16365323;chr3R_16365380_16365381 chr3R_16365146_16365322;chr3R_16365381_16365638 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.32 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14778,pck,CG14780 chrX + chrX_1365382_1365440 chrX_1365381_1365382;chrX_1365440_1365441 chrX_1365173_1365381;chrX_1365441_1365636 0.00 0.00 0.00 7.27 2.17 0.00 0.00 3.70 0.00 0.00 4.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 2.50 2.35 0.00 2.26 2.04 0.00 0.00 0.00 2.08 4.88 16.25 0.00 3.92 0.00 5.77 3.75 0.00 0.00 3.23 0.00 0.00 0.00 4.84 2.90 0.00 0.00 0.00 0.00 4.08 2.67 0.00 2.90 2.86 0.00 0.00 4.76 0.00 0.00 4.29 0.00 K alternative_acceptor Galpha49B,I_chr2R_8504706_8504960,I_chr2R_8506056_8506112 chr2R + chr2R_8500357_8501648;chr2R_8500357_8501759 chr2R_8500357_8501071 chr2R_8500333_8500356;chr2R_8501760_8501850 83.87 92.86 87.50 76.92 100.00 70.00 81.82 89.19 93.62 71.43 84.62 90.74 94.44 95.65 80.00 89.36 84.21 75.00 73.91 91.67 100.00 81.82 100.00 80.00 81.82 83.33 86.67 83.33 75.00 88.89 94.12 66.67 70.00 94.44 86.67 84.62 75.00 85.71 66.67 80.00 66.67 83.87 89.47 78.57 66.67 81.25 80.00 77.27 82.50 83.33 94.44 92.86 100.00 100.00 88.24 85.71 66.67 81.82 K jcn_only_AD mud chrX + chrX_14150134_14150517 chrX_14150332_14150517 chrX_14150518_14150790;chrX_14150034_14150133 0.00 1.85 0.00 2.38 0.00 0.00 0.00 0.00 1.27 NA 4.17 1.30 0.00 2.86 5.56 3.51 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 6.45 0.00 0.00 2.17 0.00 0.00 2.33 2.63 2.86 4.35 0.00 0.00 0.00 0.00 2.56 0.00 0.00 1.18 4.48 1.69 3.80 0.00 0.00 0.00 2.27 0.00 0.00 0.00 5.26 1.64 K alternative_acceptor CG14647 chr3R + chr3R_227208_227326 chr3R_227208_227322 chr3R_227076_227207;chr3R_227327_227739 100.00 100.00 96.55 100.00 100.00 100.00 97.06 97.37 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 95.45 96.67 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 100.00 K intron_retention Sply chr2R - chr2R_12979029_12979314 chr2R_12979028_12979029;chr2R_12979314_12979315 chr2R_12978864_12979028;chr2R_12979315_12979407 46.88 43.40 46.67 54.55 46.34 47.19 59.42 61.11 54.46 47.62 48.00 47.97 51.61 49.18 57.65 44.83 55.81 50.00 46.27 48.98 54.72 42.00 46.67 48.00 47.22 40.00 52.00 46.88 33.33 51.72 50.96 28.85 37.78 47.31 46.00 17.14 35.59 40.00 46.75 31.40 34.38 47.83 44.59 44.64 39.62 31.34 47.06 32.76 47.80 31.25 50.00 57.89 28.57 48.72 53.61 37.50 38.98 20.97 K alternative_donor Psn,RI_chr3L_20430213_20430358 chr3L + chr3L_20427346_20427647;chr3L_20427403_20427647 chr3L_20427445_20427647 chr3L_20427648_20427812;chr3L_20427187_20427345 11.34 10.45 10.68 12.30 14.63 7.53 10.71 16.36 11.34 9.43 12.86 11.39 19.67 14.67 11.46 14.10 16.92 12.68 15.87 9.58 13.89 8.91 10.24 11.45 7.14 14.77 13.74 14.29 33.75 11.76 16.44 13.75 10.39 11.02 15.07 11.76 8.43 8.93 8.43 3.52 8.75 9.55 8.82 8.73 8.53 8.94 10.53 5.00 12.70 10.16 11.76 7.58 12.09 9.32 12.90 11.45 10.64 8.64 K intron_retention Ddip2,I_chr3L_252776_253313 chr3L - chr3L_252996_253313 chr3L_252995_252996;chr3L_253313_253314 chr3L_252948_252995;chr3L_253314_253413 0.00 0.00 NA 6.25 NA NA 4.76 6.67 0.00 NA 0.00 6.90 NA NA NA 6.67 NA NA 6.67 6.45 NA 0.00 0.00 0.00 25.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 8.70 6.67 NA NA 0.00 NA 3.33 NA 0.00 NA 14.29 NA 0.00 4.35 NA NA NA NA NA NA NA NA NA K cassette CG2083,I_chr3L_2791278_2791425,I_chr3L_2791278_2792005,I_chr3L_2796679_2820058,RI_chr3L_2833393_2851558 chr3L - chr3L_2791278_2792005 chr3L_2791278_2791431;chr3L_2791946_2792005 chr3L_2791432_2791945 chr3L_2791178_2791277;chr3L_2792006_2792105 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.03 100.00 98.51 100.00 100.00 100.00 100.00 100.00 100.00 98.92 100.00 100.00 99.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K cassette pgant5,I_chr2L_5074530_5077534,I_chr2L_5075830_5077076,I_chr2L_5079575_5093241 chr2L - chr2L_5074530_5077534;chr2L_5075830_5077534 chr2L_5074530_5077076,chr2L_5075830_5077076;chr2L_5077258_5077534 chr2L_5077077_5077257 chr2L_5074430_5074529;chr2L_5077535_5077634 98.28 97.33 97.22 97.85 98.28 100.00 98.41 98.92 99.27 94.67 98.28 96.46 98.15 98.48 98.68 100.00 100.00 100.00 100.00 97.20 98.59 94.57 97.94 98.68 100.00 100.00 98.80 95.65 97.18 95.70 98.51 97.96 97.60 97.09 97.26 100.00 98.85 98.46 95.79 95.59 94.67 99.32 100.00 98.75 97.75 96.23 100.00 97.99 99.15 87.50 98.73 97.56 100.00 98.11 96.67 95.65 100.00 98.11 K intron_retention MRP,I_chr2L_12727117_12729243,F_chr2L_12727117_12736035 chr2L + chr2L_12727117_12737397 chr2L_12727116_12727117;chr2L_12737397_12737398 chr2L_12727017_12727116;chr2L_12737398_12737551 19.34 11.11 21.88 52.00 10.00 11.43 21.15 26.67 21.62 17.65 35.71 25.81 26.32 14.29 24.14 15.91 25.00 20.00 29.63 19.64 26.32 NA 17.86 18.42 36.84 22.73 21.74 24.00 15.00 16.67 23.53 13.33 29.17 15.22 12.50 50.00 18.42 17.86 12.50 10.34 23.08 27.27 18.18 11.63 15.00 14.29 12.50 22.73 19.05 14.81 21.43 23.53 18.52 20.00 28.57 15.00 7.55 16.22 K multi_cassette CG17471,I_chr4_1215995_1216053,I_chr4_1216718_1217333,I_chr4_1217104_1217410 chr4 - chr4_1216718_1217383 chr4_1216718_1216790;chr4_1216889_1216945;chr4_1217104_1217383 chr4_1216791_1216888;chr4_1216946_1217103 chr4_1216618_1216717;chr4_1217384_1217398 85.16 77.78 70.00 60.87 85.71 66.67 87.50 92.86 84.21 NA 100.00 75.00 100.00 68.42 75.00 88.89 100.00 85.71 76.47 86.67 85.71 NA 100.00 100.00 40.00 33.33 100.00 100.00 NA 60.00 77.78 100.00 100.00 80.95 88.89 NA NA NA 100.00 88.89 83.33 84.00 91.67 60.00 75.00 69.23 75.00 87.50 80.00 100.00 100.00 83.33 NA 100.00 84.62 83.33 100.00 77.78 K alternative_donor CG1646,I_chr3R_24640561_24640869,I_chr3R_24641816_24641874 chr3R + chr3R_24639729_24640869 chr3R_24640561_24640869 chr3R_24640870_24640969;chr3R_24639603_24639728 2.27 2.22 2.15 2.35 1.90 1.06 3.33 4.20 2.38 2.60 0.98 3.11 4.29 2.30 2.52 4.62 2.27 1.02 2.97 2.56 1.14 1.06 6.82 2.26 4.72 0.76 2.19 1.01 1.60 1.49 2.19 3.12 1.45 4.03 2.04 2.61 1.61 1.21 1.46 2.92 3.61 2.61 4.11 1.61 2.38 2.42 0.68 2.70 3.54 2.44 1.57 1.83 1.02 2.25 2.50 2.16 2.17 3.70 K intron_retention Eno,I_chr2L_1726650_1727645,I_chr2L_1726656_1727485,EI_chr2L_1727403_1727645,I_chr2L_1728229_1728302 chr2L - chr2L_1726656_1727645 chr2L_1726655_1726656;chr2L_1727645_1727646 chr2L_1726556_1726655;chr2L_1727646_1727735 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG7203,Rack1,RI_chr2L_7826337_7826533 chr2L - chr2L_7826337_7826769 chr2L_7826337_7826533 chr2L_7826237_7826336;chr2L_7826770_7826981 1.38 1.11 0.88 1.24 0.64 0.98 1.37 1.05 0.89 2.24 0.42 1.21 0.80 1.13 0.69 1.98 0.61 0.73 1.17 0.82 0.55 3.13 1.72 1.74 1.77 1.38 1.94 3.28 2.49 1.95 5.03 2.08 1.22 0.38 2.47 1.69 1.76 1.32 1.19 1.58 1.35 0.92 0.81 2.05 1.47 1.82 1.49 1.87 1.98 2.30 2.14 2.15 1.25 1.50 0.66 2.27 4.22 1.17 K alternative_acceptor CG7158 chr3L - chr3L_21668076_21668121;chr3L_21668063_21668121 chr3L_21668049_21668121 chr3L_21668122_21668273;chr3L_21667494_21668048 0.00 5.26 6.67 5.56 0.00 0.00 0.00 5.56 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 4.17 0.00 5.26 6.25 4.35 0.00 0.00 8.33 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 8.33 0.00 0.00 5.00 0.00 0.00 4.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 K intron_retention fs(1)h,I_chrX_7950171_7952371,I_chrX_7954192_7955240 chrX - chrX_7935078_7935143 chrX_7935077_7935078;chrX_7935143_7935144 chrX_7934529_7935077;chrX_7935144_7935312 0.00 0.00 4.08 1.54 0.00 2.63 0.00 3.92 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 4.55 0.00 3.17 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG9485,I_chr2R_17217595_17218598,I_chr2R_17228865_17228924 chr2R + chr2R_17200086_17201928;chr2R_17200246_17201928 chr2R_17200289_17201928 chr2R_17201929_17202269;chr2R_17200084_17200085 65.00 NA NA NA NA NA NA NA 65.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K multi_cassette LpR2 chr3R - chr3R_21527384_21539563 chr3R_21527384_21531652;chr3R_21531758_21532008;chr3R_21532208_21532537;chr3R_21533936_21535012;chr3R_21535240_21539258;chr3R_21539379_21539563 chr3R_21531653_21531757;chr3R_21532009_21532207;chr3R_21532538_21533935;chr3R_21535013_21535239;chr3R_21539259_21539378 chr3R_21527372_21527383;chr3R_21539564_21539578 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor Nipped-B,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_616057_616283;chr2R_616057_616318;chr2R_616057_616311 chr2R_616057_617208 chr2R_615957_616056;chr2R_617209_617308 22.22 36.36 33.33 14.29 16.67 20.00 21.95 16.67 20.51 25.00 22.22 42.86 21.43 39.13 11.11 24.24 12.50 37.50 13.33 21.05 28.57 14.29 16.67 0.00 10.00 33.33 17.65 16.67 25.00 14.29 21.43 NA 12.50 13.79 11.11 30.77 22.22 20.00 25.00 26.67 NA 36.67 30.00 28.57 NA 33.33 100.00 0.00 24.14 40.00 36.84 30.77 50.00 NA 33.33 0.00 50.00 0.00 K intron_retention dally,I_chr3L_8821604_8828151 chr3L + chr3L_8881960_8882023 chr3L_8881959_8881960;chr3L_8882023_8882024 chr3L_8881752_8881959;chr3L_8882024_8882162 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_159201_160447;chr4_159201_159572 chr4_159201_160895 chr4_160448_160716;chr4_159573_159641 chr4_160896_162753 chr4_159000_159200 99.13 100.00 99.29 97.90 98.91 100.00 99.27 98.75 99.44 100.00 97.89 99.26 99.15 98.00 98.01 99.29 99.32 99.14 98.98 99.25 98.94 97.67 98.48 99.02 100.00 99.30 100.00 100.00 100.00 99.06 98.90 100.00 100.00 98.10 98.86 100.00 100.00 98.57 98.77 98.75 100.00 99.30 99.32 99.22 96.30 99.13 98.65 99.22 98.80 98.53 99.26 98.90 100.00 98.18 98.88 98.68 98.80 98.51 K jcn_only_AD Aats-val chr2R + chr2R_9086425_9086478;chr2R_9086429_9086478 chr2R_9086421_9086478 chr2R_9086479_9086689;chr2R_9086375_9086420 4.17 NA 0.00 0.00 NA NA NA NA 9.38 NA NA NA NA NA 4.17 23.81 NA NA NA 12.00 NA NA NA NA NA 4.55 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 6.90 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K jcn_only_AA Khc-73 chr2R - chr2R_11409446_11409506 chr2R_11409449_11409506 chr2R_11409507_11409609;chr2R_11409380_11409445 73.33 78.57 77.50 73.21 86.21 82.05 71.74 65.67 76.34 65.22 74.19 67.92 70.59 73.33 79.55 80.56 73.33 62.50 63.89 68.97 70.37 73.08 69.32 74.32 78.43 71.43 68.12 90.24 77.14 82.00 69.23 65.00 78.05 72.73 70.59 79.49 67.47 81.03 79.75 70.42 NA 67.95 79.41 83.33 NA 74.07 82.05 61.90 67.74 71.79 71.08 76.92 85.29 68.29 74.42 79.07 75.51 NA K alternative_acceptor RpS25,I_chr3R_7041333_7041414,I_chr3R_7041347_7041413,I_chr3R_7041347_7041556,RI_chr3R_7044164_7044221 chr3R - chr3R_7041333_7041414 chr3R_7041347_7041414 chr3R_7041415_7041483;chr3R_7041267_7041332 99.98 99.98 99.98 100.00 99.97 100.00 100.00 100.00 99.99 100.00 99.97 99.99 100.00 100.00 100.00 100.00 100.00 99.98 100.00 100.00 99.97 99.94 100.00 99.98 99.97 99.98 99.98 98.36 99.97 100.00 99.98 99.97 99.98 99.98 100.00 99.97 99.97 99.98 99.99 100.00 99.98 100.00 99.97 100.00 100.00 99.98 100.00 99.93 99.98 99.98 100.00 100.00 99.98 100.00 99.98 99.98 99.98 99.99 K jcn_only_AA CG2698,I_chr3R_3828169_3828941,I_chr3R_3828880_3828941,I_chr3R_3829483_3829715,I_chr3R_3830586_3830981 chr3R + chr3R_3829483_3829697;chr3R_3829483_3829555;chr3R_3829483_3829721 chr3R_3829483_3829709 chr3R_3829383_3829482;chr3R_3829722_3829815 14.71 14.71 9.52 11.48 14.71 24.14 14.29 11.11 17.24 NA 13.51 12.50 6.90 17.65 14.29 8.51 22.73 NA 4.76 21.57 6.06 0.00 17.31 8.06 14.29 24.49 12.73 8.33 13.11 14.29 10.45 15.15 23.81 15.56 13.95 12.82 18.18 14.81 16.92 13.51 15.62 15.00 14.71 7.94 21.67 14.71 11.54 18.00 19.05 14.29 10.14 18.18 15.38 20.00 16.67 17.31 13.21 32.35 K intron_retention CG14749 chr2R + chr2R_4517048_4517112 chr2R_4517047_4517048;chr2R_4517112_4517113 chr2R_4515382_4517047;chr2R_4517113_4517691 100.00 95.00 100.00 95.65 100.00 100.00 96.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 96.55 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention cib,I_chrX_4000307_4003527 chrX + chrX_4004044_4004184 chrX_4004043_4004044;chrX_4004184_4004185 chrX_4003930_4004043;chrX_4004185_4004787 2.31 1.71 3.20 2.54 2.15 1.69 4.70 2.49 3.69 1.82 0.00 3.74 5.41 3.54 2.55 2.99 4.04 1.43 2.26 4.23 3.19 2.48 1.52 0.00 3.19 2.34 7.44 10.53 2.27 0.00 1.68 2.68 0.00 2.92 0.77 5.32 0.00 0.71 3.62 1.36 1.80 3.43 1.85 0.75 1.25 0.46 1.28 0.00 3.38 2.31 3.23 4.21 0.00 0.61 1.26 2.41 0.00 2.68 K intron_retention noncoding_4282 chr2L + chr2L_22131448_22131502 chr2L_22131447_22131448;chr2L_22131502_22131503 chr2L_22131354_22131447;chr2L_22131503_22131699 36.36 50.00 33.33 61.32 35.90 25.00 29.69 36.25 37.04 35.71 34.21 36.36 28.57 35.00 41.38 39.78 31.71 41.51 43.14 37.50 45.24 NA 43.59 32.26 45.45 59.18 63.64 70.59 43.75 47.37 37.70 26.67 47.06 35.37 44.44 58.06 28.57 17.39 32.50 31.25 36.36 31.33 37.50 39.13 17.65 31.25 38.24 33.33 35.23 48.15 40.00 26.09 36.00 28.00 24.56 43.33 40.54 20.00 K alternative_acceptor CG2811,I_chr2R_20828961_20829772 chr2R - chr2R_20827366_20827428 chr2R_20827378_20827428 chr2R_20827429_20827526;chr2R_20827302_20827365 94.74 100.00 94.74 88.89 100.00 93.33 93.33 94.74 96.15 88.89 100.00 97.14 100.00 94.74 95.65 96.77 81.82 94.12 100.00 89.19 93.75 87.50 94.12 96.15 91.67 100.00 91.67 100.00 100.00 NA 96.00 83.33 88.89 95.45 100.00 NA 93.75 93.33 93.75 84.62 100.00 87.50 78.57 100.00 100.00 94.74 95.83 NA 100.00 94.44 94.44 100.00 88.89 100.00 95.45 90.00 96.00 100.00 K intron_retention Rbp2,I_chrX_16343528_16343906 chrX + chrX_16345593_16345951 chrX_16345592_16345593;chrX_16345951_16345952 chrX_16345308_16345592;chrX_16345952_16346631 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 1.34 0.00 1.12 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.81 1.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG7656,I_chr3L_15580697_15581083 chr3L - chr3L_15580697_15581265;chr3L_15580697_15581083 chr3L_15580697_15581154 chr3L_15580597_15580696;chr3L_15581266_15581315 100.00 100.00 100.00 92.86 100.00 100.00 96.88 100.00 98.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 K multi_cassette CG1021,I_chr3R_2217711_2231099,I_chr3R_2217711_2231390,RI_chr3R_2217711_2231463,I_chr3R_2217742_2218601,I_chr3R_2217742_2219453,I_chr3R_2218465_2231390,RI_chr3R_2218465_2231463,I_chr3R_2218682_2231463,I_chr3R_2219634_2231390,RI_chr3R_2231206_2231270,I_chr3R_2231271_2231390,I_chr3R_2231285_2231463,I_chr3R_2231383_2231463 chr3R - chr3R_2217711_2231463 chr3R_2217711_2218601;chr3R_2218682_2219453;chr3R_2219634_2231463 chr3R_2218602_2218681;chr3R_2219454_2219633 chr3R_2217642_2217710;chr3R_2231464_2231490 60.00 85.71 75.00 100.00 75.00 100.00 50.00 100.00 66.67 60.00 75.00 60.00 57.14 80.00 83.33 66.67 NA NA 80.00 56.25 83.33 50.00 78.57 83.33 50.00 42.86 46.67 43.75 30.00 63.64 80.00 40.00 28.57 66.67 63.64 83.33 47.37 60.00 60.00 45.00 40.00 56.25 NA 42.86 33.33 46.15 60.00 42.86 63.64 69.23 81.82 100.00 50.00 42.86 50.00 87.50 58.82 47.06 N jcn_only_AD CG14253,E_chr3R_22806425_22807258 chr3R + chr3R_22806824_22807254;chr3R_22806725_22807254;chr3R_22806454_22807254 chr3R_22806425_22807254 chr3R_22807255_22807473;chr3R_22806325_22806424 88.60 81.05 88.89 88.66 89.47 92.81 84.32 88.91 87.41 NA 92.08 79.57 88.89 90.29 91.72 87.01 82.17 91.55 86.73 92.99 87.97 83.08 85.59 84.42 89.47 94.77 83.78 NA 83.87 86.11 90.67 96.30 91.04 89.86 89.89 86.84 89.66 88.64 89.19 87.80 96.00 89.71 88.60 82.14 94.87 79.73 81.16 83.95 90.69 80.56 84.55 86.21 85.71 82.35 91.43 87.65 77.63 92.92 K alternative_donor Neu3,I_chr3R_10493378_10493462,I_chr3R_10493378_10494080 chr3R - chr3R_10493378_10494587 chr3R_10493378_10493462 chr3R_10493278_10493377;chr3R_10494588_10494717 97.06 97.96 97.17 98.17 97.06 98.92 96.67 98.62 96.54 92.21 100.00 98.04 98.70 99.07 97.54 98.56 100.00 97.67 97.67 98.77 96.97 94.12 92.34 96.15 97.35 98.73 96.63 99.16 92.91 96.79 96.30 98.52 98.64 97.25 94.53 94.78 96.86 92.86 96.83 97.02 97.77 96.33 93.33 94.51 96.80 96.36 97.06 95.73 98.20 96.97 97.33 94.59 98.90 99.08 97.14 97.59 94.27 95.78 K alternative_acceptor CG3156 chrX + chrX_383110_383175 chrX_383110_383161 chrX_382907_383109;chrX_383176_383449 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA K jcn_only_AD SdhA,I_chr2R_15283283_15283411,I_chr2R_15283319_15283369 chr2R - chr2R_15283283_15283415 chr2R_15283283_15283369 chr2R_15283219_15283282;chr2R_15283416_15283469 59.70 61.70 70.97 75.73 62.50 71.79 61.64 69.88 50.58 29.63 61.54 59.83 66.67 68.75 65.28 53.26 65.75 70.49 69.86 52.59 65.85 38.24 28.57 25.00 27.27 65.71 55.00 58.82 40.62 60.47 69.81 40.91 66.67 58.57 56.52 40.00 54.87 39.34 66.67 78.95 NA 53.79 68.97 66.23 57.78 60.00 59.57 62.16 55.83 47.17 53.03 48.89 57.89 63.04 58.33 58.33 52.38 61.76 K intron_retention Rab10,I_chrX_20122832_20123581 chrX + chrX_20122832_20123311 chrX_20122831_20122832;chrX_20123311_20123312 chrX_20122732_20122831;chrX_20123312_20123511 5.76 7.22 4.76 5.20 6.06 2.00 6.10 5.43 4.46 10.64 11.22 7.78 6.54 3.45 5.38 6.85 8.49 4.04 6.61 5.28 5.88 7.01 4.27 4.11 6.20 4.50 6.02 7.25 9.86 4.76 9.52 3.12 3.23 7.19 6.32 6.67 5.70 3.60 5.76 5.98 5.08 5.12 6.02 4.08 8.62 6.32 4.20 14.04 6.28 5.66 2.88 9.28 4.88 4.60 6.85 3.31 2.63 2.60 K intron_retention I_chr2R_8821104_8821171,CG13322 chr2R - chr2R_8822615_8822670 chr2R_8822614_8822615;chr2R_8822670_8822671 chr2R_8821739_8822614;chr2R_8822671_8823004 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL27A,E_chr2L_4457411_4457977,I_chr2L_4457510_4457892,snoRNA:Me18S-C1831,I_chr2L_4458058_4458120 chr2L - chr2L_4457510_4457892 chr2L_4457509_4457510;chr2L_4457892_4457893 chr2L_4457412_4457509;chr2L_4457893_4457992 99.99 100.00 100.00 99.97 100.00 100.00 99.99 99.99 99.99 100.00 100.00 99.99 99.98 100.00 100.00 99.99 99.98 100.00 100.00 99.99 99.98 99.50 99.98 100.00 99.98 99.97 99.98 100.00 99.97 100.00 100.00 99.98 100.00 99.99 99.98 99.98 100.00 100.00 99.99 99.98 100.00 100.00 99.98 100.00 99.99 100.00 99.99 99.98 99.99 100.00 99.98 100.00 100.00 99.99 100.00 100.00 100.00 100.00 K intron_retention Got1,CG30094 chr2R + chr2R_12026390_12027834 chr2R_12026389_12026390;chr2R_12027834_12027835 chr2R_12026272_12026389;chr2R_12027835_12027942 0.00 2.56 2.17 0.00 0.00 0.00 3.51 3.85 4.92 0.00 0.00 3.08 0.00 15.00 6.82 7.69 3.70 0.00 0.00 2.74 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.92 0.00 NA 8.89 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.57 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 K jcn_only_AD l(2)03709,I_chr2R_14707617_14707700,I_chr2R_14708048_14708095 chr2R + chr2R_14707271_14707700 chr2R_14707617_14707700 chr2R_14707701_14707800;chr2R_14707129_14707270 0.00 0.27 0.26 0.23 0.00 0.00 0.00 0.27 0.00 0.21 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.46 0.00 0.39 0.00 0.00 0.17 0.00 0.00 0.00 0.36 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.45 0.27 0.00 0.00 0.00 0.00 0.27 0.13 0.26 0.00 0.12 0.17 0.00 0.19 0.00 0.00 0.20 0.00 0.00 0.00 0.00 K alternative_acceptor NELF-A chr3R + chr3R_17052227_17052375 chr3R_17052227_17052372 chr3R_17050820_17052226;chr3R_17052376_17053536 94.12 92.59 88.89 92.31 92.86 92.86 84.21 94.12 96.77 94.12 100.00 96.88 92.86 100.00 94.44 92.86 100.00 100.00 91.67 98.00 100.00 92.98 92.16 95.56 96.00 91.67 96.77 91.67 86.84 94.12 92.31 88.89 83.33 95.00 96.15 100.00 93.44 97.22 94.74 86.36 95.00 100.00 100.00 91.89 92.59 91.67 93.33 89.47 90.62 97.30 86.49 92.00 95.00 95.24 91.67 94.12 95.00 95.83 N cassette pAbp,I_chr2R_14027838_14028996 chr2R + chr2R_14029178_14032471 chr2R_14029178_14030917;chr2R_14032403_14032471 chr2R_14030918_14032402 chr2R_14028997_14029177;chr2R_14032472_14032779 100.00 100.00 100.00 99.66 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor brm,I_chr3L_15968197_15968325 chr3L - chr3L_15975664_15975902 chr3L_15975669_15975902 chr3L_15975903_15975928;chr3L_15975368_15975663 87.50 91.67 100.00 88.89 93.33 76.92 86.96 95.00 86.49 100.00 76.47 89.29 93.75 80.00 93.33 80.95 72.22 80.00 90.00 97.30 93.33 90.48 89.66 84.62 93.33 82.35 85.71 93.33 88.89 85.00 94.74 NA 85.19 87.88 71.43 100.00 84.00 90.91 94.12 84.00 90.91 87.18 83.33 100.00 71.43 91.67 71.43 80.00 85.71 85.71 82.35 85.71 87.50 NA 90.00 80.00 88.89 75.00 K jcn_only_AD RpL15 chr3LHet + chr3LHet_2398018_2398127;chr3LHet_2397859_2398127;chr3LHet_2397992_2398127;chr3LHet_2398060_2398127;chr3LHet_2397841_2398127;chr3LHet_2398002_2398127;chr3LHet_2397820_2398127;chr3LHet_2398053_2398127 chr3LHet_2397925_2398127 chr3LHet_2398128_2398454;chr3LHet_2397802_2397819 0.00 0.00 0.00 0.27 3.12 0.00 1.10 0.27 0.00 0.00 0.00 1.75 0.00 6.25 0.00 0.00 0.88 1.82 1.47 1.11 0.00 0.00 0.00 4.35 4.55 1.06 14.81 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.55 0.00 1.12 0.00 0.00 0.00 4.55 0.32 1.63 0.00 3.85 4.35 0.00 0.00 0.00 0.00 2.38 0.00 K intron_retention Stim chrX - chrX_15828808_15829327 chrX_15828807_15828808;chrX_15829327_15829328 chrX_15828550_15828807;chrX_15829328_15829375 82.50 81.25 83.33 82.28 66.67 80.65 91.53 78.67 79.01 76.47 76.47 87.50 100.00 80.49 84.62 90.14 74.19 82.05 77.36 87.67 80.95 90.00 70.00 82.50 79.17 94.00 89.29 87.10 94.29 90.00 77.78 84.78 88.57 83.08 89.29 90.91 76.47 81.82 77.78 81.33 100.00 75.00 84.09 69.05 93.33 88.00 89.47 77.27 79.79 92.59 79.41 75.00 88.57 87.10 77.78 88.24 81.03 89.57 K alternative_donor CG32537,CG32536 chrX - chrX_19169562_19170509 chrX_19169562_19170250 chrX_19169433_19169561;chrX_19170510_19170572 23.53 36.36 22.22 39.13 20.00 20.00 50.00 20.00 23.53 23.08 81.82 15.38 14.29 7.69 21.05 18.18 30.77 69.23 20.00 23.26 72.73 48.15 20.00 30.00 25.00 30.00 30.43 41.18 24.00 27.27 44.44 16.67 31.03 33.33 19.05 40.91 32.00 22.22 18.18 13.73 15.79 27.27 20.00 25.00 14.29 14.29 21.74 7.69 13.51 33.33 27.27 25.00 20.00 25.00 26.09 21.05 33.33 10.26 N jcn_only_AA Gel,I_chr3R_63540_64006,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_64100_66310 chr3R_64100_64291 chr3R_64025_64099 100.00 100.00 100.00 95.88 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention bip2,RI_chr4_481674_487126,RI_chr4_483128_487126,RI_chr4_486609_487126 chr4 - chr4_485855_487126 chr4_485854_485855;chr4_487126_487127 chr4_485750_485854;chr4_487127_487226 90.91 91.67 90.91 90.91 85.71 100.00 90.32 96.43 87.50 NA 92.31 96.00 100.00 93.33 89.47 90.48 90.00 88.89 92.86 80.95 92.31 NA NA NA NA 88.89 88.89 NA NA NA 94.74 NA NA 90.00 NA NA NA NA NA 91.67 NA 96.00 100.00 100.00 NA NA NA NA 86.67 NA 87.50 90.00 NA NA 92.86 NA NA NA K intron_retention wdb,I_chr3R_23394314_23406731,I_chr3R_23394314_23406794,I_chr3R_23394314_23407159,RI_chr3R_23394314_23407186,I_chr3R_23394314_23407412,I_chr3R_23394314_23407715,I_chr3R_23394314_23407721,RI_chr3R_23406048_23406731,RI_chr3R_23406048_23406794,I_chr3R_23406048_23406928,RI_chr3R_23406048_23407402 chr3R - chr3R_23406048_23407723 chr3R_23406047_23406048;chr3R_23407723_23407724 chr3R_23405948_23406047;chr3R_23407724_23407815 35.55 36.84 25.00 28.21 NA 37.50 50.00 40.54 42.11 NA 69.57 34.09 88.89 28.57 34.48 30.00 25.00 92.86 46.15 41.38 59.09 36.62 24.32 25.00 30.77 31.25 47.37 61.54 37.93 43.48 31.82 25.00 56.25 37.04 37.04 28.12 24.14 21.74 36.84 30.23 33.33 38.64 43.75 25.00 26.32 40.00 25.00 40.62 30.77 41.67 30.00 45.45 33.33 NA 22.73 23.53 38.46 30.77 N alternative_acceptor Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629579_2629913;chr3L_2629613_2629913;chr3L_2629684_2629913;chr3L_2629527_2629913;chr3L_2629597_2629913 chr3L_2629585_2629913 chr3L_2629914_2629921;chr3L_2629427_2629526 8.73 10.50 9.62 11.93 12.72 9.74 15.04 6.90 13.84 15.22 17.72 8.95 14.88 8.73 8.72 9.05 14.95 6.15 8.72 9.08 11.59 0.00 7.19 11.05 6.19 8.11 14.15 7.69 5.56 6.74 7.45 9.09 7.11 10.21 6.38 8.94 12.23 6.90 10.64 7.60 5.81 10.03 10.10 9.18 4.48 3.85 6.45 6.78 8.10 10.19 6.31 10.14 5.06 4.72 9.00 7.05 3.85 2.97 K alternative_donor CG6859 chr3L + chr3L_15137636_15137768 chr3L_15137650_15137768 chr3L_15137769_15139146;chr3L_15137556_15137635 0.00 2.00 1.82 0.00 3.45 2.22 2.50 0.00 0.00 2.50 0.00 2.82 2.86 0.00 2.17 0.00 0.00 0.00 0.00 1.27 0.00 1.37 1.37 0.00 3.23 2.13 0.00 5.41 2.08 0.00 0.00 0.00 1.85 1.85 0.00 4.00 0.00 0.00 0.00 2.25 2.17 3.08 0.00 0.00 2.27 1.61 1.92 1.22 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 2.41 N alternative_donor RpS27A chr2L + chr2L_10410169_10410240;chr2L_10410157_10410240 chr2L_10410052_10410240 chr2L_10410241_10410467;chr2L_10409711_10410051 99.76 99.82 99.81 99.50 99.86 99.85 99.72 99.61 99.73 99.45 99.89 99.70 99.77 99.73 99.82 99.64 99.73 99.86 99.69 99.80 99.87 99.86 99.79 99.79 99.80 99.89 99.58 98.85 99.69 99.72 99.58 99.76 99.68 99.69 99.75 99.72 99.81 99.80 99.88 99.70 99.78 99.80 99.73 99.81 99.83 99.70 99.83 99.70 99.56 99.75 99.75 99.77 99.76 99.82 99.81 99.81 99.60 99.60 K intron_retention CG3689,I_chr3L_9405436_9406302 chr3L + chr3L_9405436_9406302 chr3L_9405435_9405436;chr3L_9406302_9406303 chr3L_9405336_9405435;chr3L_9406303_9406402 90.00 88.89 90.00 92.86 NA NA 100.00 100.00 95.83 NA NA 93.75 100.00 NA 100.00 100.00 100.00 NA 87.50 84.21 80.00 90.00 83.33 77.78 88.89 88.89 78.57 NA NA NA 92.86 NA NA 94.44 88.89 NA 80.00 90.00 63.64 88.89 NA 94.44 88.89 100.00 100.00 81.25 91.67 81.82 93.75 88.89 90.00 NA 87.50 100.00 88.89 94.12 93.33 88.89 K jcn_only_AA CG11337,I_chr3R_27230306_27230374,RI_chr3R_27230320_27230374 chr3R - chr3R_27230306_27230374;chr3R_27230327_27230374 chr3R_27230320_27230374 chr3R_27230375_27230410;chr3R_27230220_27230305 32.00 NA NA 37.50 NA NA NA 32.00 24.14 NA NA 23.08 NA NA NA 32.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.81 NA NA NA NA NA NA NA 40.62 NA NA NA NA NA NA 45.00 NA NA NA NA NA 20.00 NA NA NA K alternative_donor CG3558,RI_chr2L_2995071_2997790 chr2L + chr2L_2993410_2993544;chr2L_2993444_2993544;chr2L_2993378_2993544 chr2L_2993464_2993544 chr2L_2993545_2994408;chr2L_2993028_2993377 2.71 2.33 1.92 3.66 0.00 2.44 1.00 0.93 1.68 3.33 2.38 3.57 3.77 1.82 4.08 1.10 2.17 0.00 1.61 3.96 0.00 7.46 6.00 7.14 0.00 3.70 8.11 4.76 11.84 2.86 2.04 2.00 3.49 1.83 7.41 4.76 8.57 3.12 5.71 3.03 0.00 2.06 2.56 3.08 2.50 1.27 6.25 3.82 3.88 3.57 2.33 3.03 7.14 NA 1.69 0.00 0.00 1.65 K alternative_donor Rpn5 chr3R + chr3R_1615416_1615491;chr3R_1615437_1615491 chr3R_1615433_1615491 chr3R_1615492_1616546;chr3R_1615400_1615415 100.00 97.14 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 96.97 100.00 100.00 98.57 100.00 100.00 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 98.00 100.00 98.00 100.00 98.57 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 95.65 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CG32582,I_chrX_15730402_15730457 chrX + chrX_15730242_15730457 chrX_15730242_15730314 chrX_15730223_15730241;chrX_15730458_15730474 88.89 75.00 100.00 76.19 100.00 100.00 93.33 75.00 80.95 NA NA 81.82 54.55 66.67 90.00 93.33 80.00 100.00 71.43 87.50 NA 100.00 90.91 76.92 NA 66.67 83.33 80.00 100.00 88.89 90.91 100.00 100.00 73.33 85.71 100.00 88.89 90.91 100.00 80.00 100.00 92.86 63.64 90.00 100.00 91.67 100.00 100.00 81.82 81.82 77.78 83.33 93.33 92.31 100.00 80.00 80.95 86.67 K alternative_donor Rap2l,I_chr2R_19951753_19952256,RI_chr2R_19952181_19952256 chr2R + chr2R_19951097_19952256;chr2R_19951753_19952256 chr2R_19952181_19952256 chr2R_19952257_19952356;chr2R_19950576_19951096 5.97 5.77 3.85 3.95 4.76 4.00 8.11 4.17 5.36 7.14 9.09 5.00 4.35 3.92 3.85 8.77 4.35 4.76 5.56 6.76 8.11 6.41 6.76 7.35 8.82 5.45 6.98 21.05 8.11 9.09 7.58 4.76 7.14 5.81 7.32 9.09 12.50 4.08 4.84 7.59 5.45 5.66 5.26 5.97 5.88 3.66 7.41 3.28 7.29 9.86 9.62 7.14 4.55 6.98 4.69 7.35 6.06 5.97 K alternative_donor CG32425,I_chr3L_20490581_20505036,CG18281,CG17637,CG5078,I_chr3L_20502617_20503129,I_chr3L_20504930_20505036 chr3L + chr3L_20490526_20503129 chr3L_20491565_20503129 chr3L_20503130_20503229;chr3L_20490481_20490525 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 97.67 93.75 100.00 97.06 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 94.12 100.00 95.00 100.00 94.74 100.00 100.00 92.86 100.00 100.00 100.00 94.44 100.00 90.91 100.00 97.44 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 94.12 96.67 100.00 93.33 100.00 100.00 100.00 100.00 96.00 K intron_retention CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_235894_235955 chr4_235893_235894;chr4_235955_235956 chr4_235781_235893;chr4_235956_236186 0.00 0.00 0.00 5.88 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 3.03 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chr2R_13458667_13458738,Rab4,I_chr2R_13461027_13461136 chr2R + chr2R_13461773_13461835 chr2R_13461772_13461773;chr2R_13461835_13461836 chr2R_13461440_13461772;chr2R_13461836_13462479 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor eIF3-S10,I_chr3R_259324_259488 chr3R - chr3R_259324_259488 chr3R_259324_259420 chr3R_259224_259323;chr3R_259489_259577 100.00 99.34 99.32 99.55 100.00 100.00 100.00 100.00 99.66 98.63 99.07 99.58 100.00 100.00 99.36 100.00 100.00 100.00 100.00 99.60 99.17 99.61 99.54 99.42 100.00 100.00 100.00 99.57 98.92 100.00 99.21 98.36 100.00 100.00 100.00 99.36 99.27 100.00 100.00 100.00 100.00 99.63 100.00 100.00 98.59 98.28 100.00 100.00 99.68 100.00 99.08 100.00 98.65 100.00 100.00 99.14 100.00 97.83 K intron_retention Gap1 chr3L - chr3L_9838540_9847764 chr3L_9838539_9838540;chr3L_9847764_9847765 chr3L_9836654_9838539;chr3L_9847765_9848364 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 1.64 0.00 0.00 3.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 2.56 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Crk,RI_chr4_231302_233315,RI_chr4_231307_231369,RI_chr4_231307_232217,I_chr4_231307_232253 chr4 + chr4_231302_232264 chr4_231301_231302;chr4_232264_232265 chr4_231208_231301;chr4_232265_232317 66.67 80.00 NA 64.71 NA 63.64 75.00 75.00 75.00 NA NA 77.78 61.54 61.54 NA 75.00 NA 77.78 82.35 70.00 NA NA 77.78 NA NA NA 80.00 NA NA 33.33 66.67 50.00 20.00 77.27 NA NA NA NA NA 44.00 71.43 55.00 58.33 66.67 NA 59.09 NA 61.90 71.43 41.67 66.67 NA NA NA 57.14 69.23 70.00 35.29 K intron_retention CG5098 chr2R + chr2R_13983564_13983786 chr2R_13983563_13983564;chr2R_13983786_13983787 chr2R_13983431_13983563;chr2R_13983787_13983983 15.38 NA 14.29 35.71 NA NA NA NA 20.00 NA NA 26.67 NA NA NA NA NA NA 15.38 23.53 NA NA NA NA NA NA NA NA NA 33.33 14.29 NA NA 14.29 NA NA NA NA NA 19.05 NA 12.50 NA NA NA NA NA 6.25 11.11 NA 22.22 NA NA NA NA NA NA 12.50 K intron_retention Caki,CEF_chr3R_17615483_17615583 chr3R - chr3R_17615483_17617252 chr3R_17615482_17615483;chr3R_17617252_17617253 chr3R_17615384_17615482;chr3R_17617253_17617321 0.74 0.00 0.93 1.49 1.01 0.00 1.89 0.00 0.83 0.00 2.35 1.80 0.00 1.35 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.41 1.22 0.85 2.35 0.00 1.43 0.00 1.94 1.35 0.93 1.25 0.00 1.95 0.00 2.41 0.40 1.31 0.00 2.30 0.00 1.42 0.00 0.74 0.88 0.88 1.54 0.00 2.56 0.00 0.00 2.70 0.00 0.00 2.40 0.79 0.00 0.00 K jcn_only_AD Not1,I_chr2R_5463624_5463682 chr2R - chr2R_5457662_5457724 chr2R_5457662_5457718 chr2R_5456490_5457661;chr2R_5457725_5460288 75.53 73.28 82.59 67.89 71.89 75.15 80.71 69.88 74.35 76.70 75.53 74.17 76.77 76.53 78.28 80.20 73.60 74.63 77.42 72.90 72.67 76.16 76.85 73.77 78.06 79.65 73.88 73.84 78.40 74.17 77.57 72.38 75.35 81.38 78.54 68.64 75.69 82.67 79.56 77.70 72.53 73.38 73.84 73.03 74.26 75.69 76.82 72.66 79.19 75.93 74.45 74.90 81.36 74.83 77.59 78.33 76.44 68.67 K jcn_only_AA CG9934,I_chr2L_13018178_13019071 chr2L - chr2L_13018175_13018789 chr2L_13018178_13018789 chr2L_13018790_13019118;chr2L_13018078_13018174 66.67 74.47 57.50 70.27 77.42 75.68 61.54 65.96 72.29 68.75 58.00 71.43 51.61 75.00 59.09 65.12 60.61 66.67 58.93 71.95 65.31 74.47 60.61 76.74 66.67 57.14 83.33 79.31 63.89 68.00 59.18 88.46 71.19 75.93 53.12 75.76 73.17 74.19 70.59 67.65 58.97 66.23 58.33 55.00 76.19 65.71 70.37 63.49 59.15 88.46 70.83 58.06 NA NA 47.73 64.52 69.57 63.89 K intron_retention ImpL3,I_chr3L_6253985_6254165,I_chr3L_6253985_6255466,RI_chr3L_6255603_6255658 chr3L - chr3L_6253985_6255658 chr3L_6253984_6253985;chr3L_6255658_6255659 chr3L_6253885_6253984;chr3L_6255659_6255758 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10080 chr2R + chr2R_17517559_17517991 chr2R_17517558_17517559;chr2R_17517991_17517992 chr2R_17517196_17517558;chr2R_17517992_17518052 42.42 40.48 42.42 35.42 52.17 48.39 41.67 21.57 35.59 41.67 41.38 42.86 37.50 44.44 30.00 37.21 32.43 37.14 40.00 35.56 37.14 62.71 47.73 45.95 52.17 35.14 41.46 31.11 52.94 40.74 54.05 59.52 59.52 30.51 66.67 64.52 37.31 39.53 51.11 47.46 65.62 37.80 39.29 58.97 64.86 66.07 55.17 72.34 45.16 39.29 54.55 46.88 47.06 57.14 42.11 37.50 42.31 67.74 K intron_retention CG42232 chr3R - chr3R_12294398_12294554 chr3R_12294397_12294398;chr3R_12294554_12294555 chr3R_12292755_12294397;chr3R_12294555_12294598 0.00 NA NA 0.00 NA 0.00 10.00 5.41 6.67 NA NA 10.34 10.53 0.00 0.00 0.00 4.55 5.88 0.00 0.00 NA 14.29 0.00 NA NA 0.00 7.14 NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K intron_retention E(bx),I_chr3L_246324_246699 chr3L - chr3L_246324_246382 chr3L_246323_246324;chr3L_246382_246383 chr3L_246224_246323;chr3L_246383_246409 0.00 0.00 0.00 0.00 NA 12.50 3.70 0.00 8.82 0.00 0.00 8.11 0.00 0.00 0.00 0.00 NA 0.00 0.00 8.51 NA 0.00 6.67 NA NA 0.00 0.00 NA NA 15.00 0.00 NA 12.50 10.00 6.25 NA 0.00 NA 6.25 0.00 NA 9.38 0.00 0.00 NA NA NA 15.38 2.94 NA 9.09 NA NA NA 0.00 NA NA NA K jcn_only_AD CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1666219_1670203;chr2R_1666219_1670219;chr2R_1666219_1669803;chr2R_1666219_1670325 chr2R_1666219_1670281 chr2R_1666119_1666218;chr2R_1670326_1670328 51.52 63.64 45.95 52.50 50.00 44.00 37.78 54.55 60.00 52.00 70.00 50.00 65.79 51.52 41.94 47.76 42.11 56.00 36.36 45.83 52.38 NA 69.23 47.83 NA 39.29 59.26 NA 48.39 56.52 38.30 38.71 62.07 43.94 43.48 20.00 52.38 NA NA 66.67 39.39 59.65 48.39 56.52 52.38 48.15 NA 43.24 50.62 71.43 57.14 54.55 38.10 NA 55.26 NA 52.38 53.25 K intron_retention RpL27,I_chr3R_21510239_21510298,RI_chr3R_21510239_21510441,I_chr3R_21510239_21510464,I_chr3R_21510239_21510656,I_chr3R_21510239_21510726 chr3R - chr3R_21510239_21510680 chr3R_21510238_21510239;chr3R_21510680_21510681 chr3R_21510139_21510238;chr3R_21510681_21510745 19.15 NA NA 17.65 NA NA 31.82 12.50 23.81 NA NA NA NA NA NA 28.57 NA NA NA 17.65 NA NA 5.00 18.75 NA NA 5.56 33.33 19.15 NA NA NA NA 14.29 NA NA 14.29 NA NA NA 21.43 35.71 NA NA 11.76 33.33 25.00 NA 45.45 NA NA NA NA NA NA NA 12.50 22.73 K alternative_donor I_chr3R_23749027_23749091,CG5508,E_chr3R_23755071_23758533 chr3R + chr3R_23751064_23751390;chr3R_23751130_23751390 chr3R_23751068_23751390 chr3R_23751391_23751715;chr3R_23750915_23751063 33.33 42.86 25.00 33.33 28.57 33.33 NA 35.00 31.25 16.67 NA 35.29 33.33 26.67 50.00 NA NA 28.57 31.25 26.67 NA 33.33 NA 28.57 NA 37.50 NA NA NA NA 33.33 NA 40.00 33.33 28.57 NA 20.00 NA NA 33.33 NA 13.33 NA NA NA 27.27 50.00 NA 25.00 NA NA NA NA 33.33 37.50 NA 33.33 NA N intron_retention CG34325,I_chrX_16609323_16614744,I_chrX_16613013_16613071,I_chrX_16613170_16614744 chrX - chrX_16610696_16610788 chrX_16610695_16610696;chrX_16610788_16610789 chrX_16610471_16610695;chrX_16610789_16610857 35.09 NA 40.00 NA NA NA 36.84 NA 26.32 NA NA 44.44 NA NA NA 30.77 NA NA NA 30.77 NA 52.17 27.27 100.00 NA NA 55.56 53.85 47.62 40.00 NA NA 40.00 22.22 21.05 NA 26.67 NA 28.57 31.82 NA 38.89 NA NA 50.00 42.11 NA NA 29.41 30.77 NA 15.38 NA NA 50.00 NA 33.33 25.00 K intron_retention unc-13,I_chr4_904268_904671,CRE_chr4_904268_906381,I_chr4_904268_919018,I_chr4_904747_906385,REI_chr4_906314_906385,I_chr4_906518_906708,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_904268_906385 chr4_904267_904268;chr4_906385_906386 chr4_904196_904267;chr4_906386_906481 1.69 5.00 1.67 3.45 5.00 0.00 1.69 2.88 5.19 0.00 9.52 3.10 5.00 4.17 3.12 4.60 3.45 3.33 6.35 1.95 7.69 0.00 2.30 0.00 0.00 2.90 0.00 0.00 0.00 1.85 2.46 4.00 0.00 7.08 0.00 0.93 0.00 0.00 0.00 1.64 1.59 5.65 2.33 0.00 0.00 0.00 0.00 1.64 3.88 0.00 1.72 0.00 0.00 0.00 2.70 0.00 0.00 4.44 K alternative_acceptor Pof chr2R + chr2R_20556998_20557144;chr2R_20556998_20557050 chr2R_20556998_20557046 chr2R_20556952_20556997;chr2R_20557145_20557370 33.33 33.33 66.67 28.57 NA 28.57 NA 42.86 NA NA NA 36.36 NA NA 50.00 42.86 NA 33.33 NA 36.36 33.33 NA 27.27 33.33 NA NA NA NA NA NA NA NA NA 33.33 NA NA 25.00 25.00 14.29 NA NA 40.00 NA NA NA 33.33 16.67 NA 33.33 22.22 42.86 40.00 14.29 16.67 42.86 40.00 NA 40.00 K intron_retention CG18170,CG33230,ABCB7 chr3L + chr3L_1620555_1620918 chr3L_1620554_1620555;chr3L_1620918_1620919 chr3L_1620428_1620554;chr3L_1620919_1621042 28.00 41.67 28.95 39.39 19.35 33.33 31.11 29.41 27.14 42.86 26.47 28.57 20.83 23.08 17.65 28.00 22.22 37.50 34.78 26.03 17.39 17.78 34.18 33.87 43.59 28.57 33.33 23.26 16.36 29.63 33.33 21.88 25.86 38.89 31.43 69.05 20.73 45.16 19.54 20.27 25.93 24.72 33.33 23.46 15.09 25.53 36.36 15.69 33.96 26.53 39.39 32.26 25.00 25.58 31.25 33.33 26.00 16.22 K jcn_only_AD CG6912 chr3R - chr3R_10962115_10962204 chr3R_10962115_10962193 chr3R_10962052_10962114;chr3R_10962205_10962253 95.87 95.58 97.00 97.52 100.00 97.37 97.03 98.60 95.24 100.00 96.83 95.24 99.47 98.94 96.59 97.67 98.00 94.78 97.37 97.18 98.88 95.79 97.50 98.99 90.00 95.83 95.65 95.31 92.73 94.83 79.17 96.39 94.30 94.07 92.42 92.59 93.39 100.00 95.90 96.99 91.07 95.79 97.37 97.67 96.81 94.67 96.70 94.90 95.72 NA 94.95 95.24 88.57 97.06 97.06 91.15 90.91 95.55 K intron_retention Chd64,ens,I_chr3L_4130719_4131120 chr3L - chr3L_4115647_4115722 chr3L_4115646_4115647;chr3L_4115722_4115723 chr3L_4115305_4115646;chr3L_4115723_4115800 83.33 NA NA 71.43 NA 77.78 81.82 83.33 75.00 NA NA 80.00 NA NA NA 91.67 NA 41.67 NA 62.50 NA NA 83.33 NA NA NA 90.00 88.89 91.67 NA NA NA NA NA NA 90.00 77.78 NA 90.00 87.50 NA 81.82 NA 84.62 NA 88.89 NA NA 81.82 NA 92.31 NA NA NA NA NA NA NA K alternative_acceptor mael chr3L + chr3L_22717786_22717839 chr3L_22717786_22717830 chr3L_22717584_22717785;chr3L_22717840_22718029 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 3.33 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Pde1c,esc,I_chr2L_11838774_11925541 chr2L - chr2L_11829104_11829175 chr2L_11829103_11829104;chr2L_11829175_11829176 chr2L_11828970_11829103;chr2L_11829176_11829364 4.35 0.00 0.00 0.00 6.67 0.00 5.56 0.00 2.70 12.50 0.00 4.35 10.00 11.11 3.70 0.00 5.56 0.00 0.00 3.92 0.00 44.00 12.90 3.85 NA 41.18 0.00 54.55 68.97 0.00 6.06 6.67 4.44 3.03 NA 7.14 17.39 15.79 11.11 10.00 33.33 7.41 0.00 5.00 14.29 0.00 4.76 18.00 4.44 0.00 0.00 0.00 3.70 0.00 0.00 21.05 0.00 3.77 K intron_retention gp210,I_chr2R_1653709_1654789,I_chr2R_1655359_1655422 chr2R + chr2R_1654912_1654967 chr2R_1654911_1654912;chr2R_1654967_1654968 chr2R_1654790_1654911;chr2R_1654968_1655053 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N intron_retention CG7945,RI_chr3L_15515681_15516932,RI_chr3L_15516824_15516932 chr3L - chr3L_15516841_15516932 chr3L_15516840_15516841;chr3L_15516932_15516933 chr3L_15516612_15516840;chr3L_15516933_15517032 100.00 NA NA NA 100.00 NA 60.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 100.00 NA NA 100.00 100.00 NA 100.00 100.00 NA 100.00 NA NA NA NA 100.00 100.00 NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K intron_retention CG17446,c11_1 chrX - chrX_9166637_9166698 chrX_9166636_9166637;chrX_9166698_9166699 chrX_9165949_9166636;chrX_9166699_9166832 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA 10.53 NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA 0.00 NA 5.88 NA NA NA 0.00 0.00 N alternative_donor rl,F_chr2RHet_333976_338428,noncoding_9454 chr2RHet + chr2RHet_333976_334551 chr2RHet_334247_334551 chr2RHet_334552_334614;chr2RHet_333929_333975 100.00 100.00 100.00 45.45 100.00 100.00 100.00 100.00 100.00 NA 100.00 53.33 100.00 100.00 100.00 72.73 100.00 100.00 50.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 NA NA 52.63 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K intron_retention Pms2,I_chr2R_11257708_11257764 chr2R - chr2R_11255939_11255990 chr2R_11255938_11255939;chr2R_11255990_11255991 chr2R_11255577_11255938;chr2R_11255991_11256244 0.00 NA NA 10.53 NA NA 10.53 0.00 17.86 NA NA 0.00 NA NA NA 0.00 NA NA NA 9.26 NA NA 0.00 NA 0.00 NA 11.11 NA NA NA 0.00 10.53 10.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 19.23 10.00 0.00 0.00 NA NA 0.00 NA NA 0.00 6.67 K intron_retention CG2211,CG2199,RI_chr3L_1345162_1345493 chr3L - chr3L_1334457_1334512 chr3L_1334456_1334457;chr3L_1334512_1334513 chr3L_1334450_1334456;chr3L_1334513_1334566 5.56 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 6.25 NA NA NA NA NA NA 5.56 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG17224,RI_chr2L_3017869_3017958,RI_chr2L_3018025_3018085,RI_chr2L_3018082_3018278,RI_chr2L_3022346_3022422,CG3605 chr2L - chr2L_3018025_3018278;chr2L_3018018_3018278 chr2L_3018082_3018278 chr2L_3018279_3018287;chr2L_3017982_3018017 72.85 52.94 75.00 75.86 NA 86.36 61.76 NA 53.85 62.50 58.33 71.79 NA 73.91 76.47 75.86 54.55 80.00 75.86 NA 70.59 81.25 75.00 83.33 71.43 44.44 NA NA NA 75.00 88.24 54.55 55.56 63.89 NA NA 58.33 NA 57.14 75.00 NA 75.86 76.47 75.00 NA 61.11 NA 75.00 55.81 81.82 75.00 54.55 NA NA NA NA 71.43 57.14 K intron_retention AGO1,I_chr2R_9844856_9845327 chr2R - chr2R_9839194_9840553 chr2R_9839193_9839194;chr2R_9840553_9840554 chr2R_9839119_9839193;chr2R_9840554_9840620 2.67 0.00 2.63 6.67 0.00 3.45 11.11 6.78 6.56 0.00 0.00 3.28 3.45 0.00 2.63 4.65 7.41 0.00 2.70 0.00 0.00 0.00 2.04 0.00 0.00 0.00 6.67 7.14 0.00 3.45 0.00 NA 0.00 3.23 0.00 0.00 5.26 0.00 0.00 0.00 NA 3.95 5.88 3.12 NA NA NA 8.33 5.13 NA 4.88 4.35 NA NA 6.25 NA NA NA K alternative_acceptor CG7852,Cct1,Cct2 chr3L + chr3L_1540958_1541655 chr3L_1540958_1541435 chr3L_1540752_1540957;chr3L_1541656_1541677 85.19 76.92 85.71 88.89 83.33 62.50 NA 80.00 88.00 73.33 NA 92.86 NA 87.50 87.50 100.00 85.71 NA 70.00 76.47 80.00 97.37 71.79 82.35 87.50 85.71 92.86 93.33 77.78 88.89 91.67 63.64 94.12 100.00 78.57 96.15 86.67 80.00 73.08 85.19 80.00 89.47 71.43 70.00 71.43 81.82 76.47 94.44 92.86 77.78 83.33 76.92 90.91 66.67 91.67 64.29 91.67 90.91 K intron_retention babo chr2R + chr2R_4842357_4844533 chr2R_4842356_4842357;chr2R_4844533_4844534 chr2R_4842239_4842356;chr2R_4844534_4844661 45.30 NA 27.78 46.15 NA NA 42.11 44.44 60.71 NA NA 50.00 NA 43.75 NA 59.09 35.29 NA 33.33 40.74 50.00 41.67 46.15 NA NA 50.00 53.85 NA NA NA 42.86 NA NA 55.00 NA 41.67 NA NA NA 22.22 NA 48.00 52.63 NA NA NA NA NA 46.15 NA NA NA NA NA 42.86 NA NA NA K intron_retention Prosbeta1,CG8397 chr2R - chr2R_11901551_11901618 chr2R_11901550_11901551;chr2R_11901618_11901619 chr2R_11901303_11901550;chr2R_11901619_11902093 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 K cassette CG34449,I_chrX_9222628_9227416,RI_chrX_9232665_9233022,RI_chrX_9249212_9250033,RI_chrX_9249212_9250244 chrX - chrX_9222628_9227416 chrX_9222628_9226486;chrX_9226733_9227416 chrX_9226487_9226732 chrX_9222528_9222627;chrX_9227417_9227516 97.62 97.22 94.74 94.44 95.00 100.00 94.44 94.44 97.62 97.62 100.00 97.44 94.12 92.31 96.15 100.00 93.33 100.00 100.00 95.45 88.24 99.13 98.39 98.44 96.36 100.00 97.50 93.10 92.98 97.96 94.44 95.83 98.70 100.00 96.30 100.00 98.95 96.77 97.01 98.11 100.00 98.18 100.00 100.00 96.61 97.37 97.30 98.39 100.00 96.88 98.04 100.00 97.87 100.00 100.00 100.00 96.88 97.96 K jcn_only_AD I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,RI_chr3R_17189607_17189988 chr3R - chr3R_17189607_17200781 chr3R_17189607_17189988 chr3R_17189507_17189606;chr3R_17200782_17200881 10.87 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 21.74 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Brf,RI_chr3R_13220037_13220257 chr3R - chr3R_13201503_13201565 chr3R_13201502_13201503;chr3R_13201565_13201566 chr3R_13200560_13201502;chr3R_13201566_13202493 0.00 0.00 3.28 5.71 0.00 0.00 1.67 1.45 2.60 0.00 0.00 1.18 0.00 3.23 0.00 0.00 0.00 0.00 2.04 0.88 0.00 0.00 1.19 0.00 0.00 0.00 2.70 0.00 4.17 5.56 1.59 0.00 0.00 0.00 0.00 2.17 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 4.17 N cassette RpL11,I_chr2R_15330246_15330292,I_chr2R_15330603_15330817 chr2R + chr2R_15330246_15330817 chr2R_15330246_15330305;chr2R_15330604_15330817 chr2R_15330306_15330603 chr2R_15330177_15330245;chr2R_15330818_15330917 100.00 100.00 100.00 99.84 100.00 99.77 100.00 99.79 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.80 99.79 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG32685,CREI_chrX_9967445_9972518 chrX - chrX_9967445_9967909 chrX_9967444_9967445;chrX_9967909_9967910 chrX_9967345_9967444;chrX_9967910_9968098 3.88 2.20 5.66 3.28 6.52 3.64 9.72 11.76 4.27 0.00 5.71 6.00 13.33 4.55 6.25 3.57 6.82 5.00 7.55 5.00 2.27 0.00 0.77 1.80 2.94 5.66 6.49 5.45 7.55 4.00 9.62 3.77 0.00 4.26 3.03 4.17 2.68 0.00 3.45 4.31 3.51 4.50 7.50 3.88 2.78 3.26 2.27 3.28 4.13 1.57 1.52 3.39 3.45 1.50 6.25 3.45 3.54 3.95 K intron_retention CG5885 chr2L - chr2L_9917868_9917933 chr2L_9917867_9917868;chr2L_9917933_9917934 chr2L_9917206_9917867;chr2L_9917934_9918393 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.39 0.00 0.65 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.76 0.00 0.35 0.00 0.00 0.48 0.00 0.00 0.84 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.61 0.00 0.52 0.00 K jcn_only_AD eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20341636_20342041;chr3L_20341509_20342041;chr3L_20341865_20342041;chr3L_20341486_20342041;chr3L_20341522_20342041;chr3L_20341751_20342041;chr3L_20341530_20342041;chr3L_20341629_20342041;chr3L_20341598_20342041;chr3L_20341759_20342041 chr3L_20341925_20342041 chr3L_20342042_20342306;chr3L_20341482_20341485 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K jcn_only_AD CG15098,I_chr2R_14721883_14721980 chr2R - chr2R_14721902_14721983 chr2R_14721902_14721980 chr2R_14721834_14721901;chr2R_14721984_14722049 99.84 99.91 99.62 99.66 99.92 100.00 99.85 99.82 99.83 99.73 99.57 99.92 99.79 99.66 99.87 99.82 99.92 99.81 99.86 99.85 99.67 99.85 100.00 100.00 100.00 99.74 99.72 99.66 99.79 99.84 99.85 99.53 99.86 99.67 100.00 99.58 99.86 100.00 99.90 99.83 99.89 99.83 99.80 100.00 99.88 99.64 99.92 99.85 99.70 99.79 99.81 99.82 99.88 99.80 99.84 99.88 99.91 99.82 K intron_retention CG18812,RI_chr2R_3613277_3613372,I_chr2R_3617214_3622585 chr2R - chr2R_3613295_3613372 chr2R_3613294_3613295;chr2R_3613372_3613373 chr2R_3613194_3613294;chr2R_3613373_3613472 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Rab40,RI_chrX_12354642_12355021 chrX - chrX_12355683_12355768 chrX_12355713_12355768 chrX_12355769_12355837;chrX_12355615_12355682 28.57 34.78 34.62 30.56 35.00 35.71 28.57 28.57 29.73 34.78 25.00 30.00 33.33 44.44 31.25 24.32 29.17 18.18 33.33 33.33 22.73 33.33 35.29 18.60 21.43 18.75 35.29 33.33 30.30 27.78 29.41 31.03 40.00 32.43 33.33 26.92 23.08 22.58 19.61 25.86 17.65 33.33 26.32 23.53 24.14 25.00 25.93 34.62 25.49 20.69 25.81 25.93 46.15 25.00 20.93 22.58 16.13 27.94 K intron_retention CG10638,RI_chr3L_12493924_12493974 chr3L - chr3L_12492589_12494264 chr3L_12492588_12492589;chr3L_12494264_12494265 chr3L_12492520_12492588;chr3L_12494265_12494405 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.28 0.00 1.82 0.68 0.00 0.00 0.00 0.82 1.61 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 1.05 0.00 0.00 0.49 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention DmL37a chr2L + chr2L_5071356_5071608 chr2L_5071355_5071356;chr2L_5071608_5071609 chr2L_5071227_5071355;chr2L_5071609_5072174 0.00 0.02 0.00 0.01 0.00 0.00 0.00 0.02 0.02 0.00 0.00 0.02 0.00 0.00 0.03 0.04 0.00 0.00 0.00 0.01 0.00 0.00 0.02 0.00 0.00 0.04 0.03 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.02 0.03 0.01 0.00 0.02 0.03 0.02 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.01 K intron_retention gw,I_chr4_679135_681671 chr4 - chr4_674675_675130 chr4_674674_674675;chr4_675130_675131 chr4_674496_674674;chr4_675131_675415 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG8611,I_chrX_17309193_17309577 chrX - chrX_17309193_17313480 chrX_17309193_17309577 chrX_17309093_17309192;chrX_17313481_17313908 0.00 0.00 0.00 0.00 0.00 5.00 3.03 0.00 0.00 3.70 NA 2.08 NA NA 0.00 4.44 0.00 0.00 NA 9.09 0.00 10.71 2.04 3.17 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 2.27 1.92 0.00 5.71 0.00 0.00 3.88 0.00 3.12 2.90 6.06 0.00 4.00 0.00 0.00 4.00 1.67 0.00 0.00 4.76 1.85 0.00 2.56 0.00 1.03 0.00 K alternative_last_exon Tequila,F_chr3L_9070061_9077585 chr3L + chr3L_9068723_9068771;chr3L_9068723_9069957 chr3L_9068723_9080948 chr3L_9068772_9069365;chr3L_9069958_9070727 chr3L_9080949_9083048 chr3L_9068164_9068722 31.25 40.00 31.82 75.41 25.00 17.65 18.18 28.30 23.64 52.94 28.57 3.45 17.86 25.93 23.08 18.18 26.32 33.33 24.14 3.85 27.27 45.45 22.50 31.25 42.86 57.14 27.27 55.56 72.73 25.00 31.25 36.36 54.84 31.58 38.89 24.00 20.00 28.57 27.78 42.50 46.15 23.53 25.00 29.63 62.50 38.89 46.67 44.12 29.41 85.00 20.83 30.77 50.00 62.50 35.48 37.50 38.46 61.54 K jcn_only_AA Pur-alpha,I_chr4_581447_585166 chr4 + chr4_581038_581099 chr4_581038_581096 chr4_580998_581037;chr4_581100_581209 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.45 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K alternative_donor mys,I_chrX_7958795_7961094 chrX + chrX_7955904_7957872;chrX_7955908_7957872;chrX_7955914_7957872;chrX_7956114_7957872;chrX_7955901_7957872;chrX_7956125_7957872;chrX_7955967_7957872 chrX_7955759_7957872 chrX_7957873_7958492;chrX_7955741_7955758 85.11 76.12 85.50 86.17 93.52 88.18 83.21 89.64 87.19 89.02 86.67 88.51 97.37 85.11 89.03 84.48 88.80 85.04 87.26 89.68 86.99 84.62 71.74 69.23 73.47 87.65 64.29 75.68 86.99 75.53 88.89 88.14 85.80 86.13 72.88 64.81 82.96 84.48 78.82 83.25 80.77 89.60 85.57 84.69 89.01 80.41 72.92 89.67 87.69 66.67 70.00 79.66 81.25 56.25 89.27 73.33 72.15 86.92 K intron_retention CG12129,RI_chr2R_5921057_5921261 chr2R + chr2R_5921209_5921261 chr2R_5921208_5921209;chr2R_5921261_5921262 chr2R_5921109_5921208;chr2R_5921262_5921361 0.00 0.00 0.00 7.41 0.00 0.00 2.70 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 4.00 0.00 NA 0.00 0.00 NA 0.00 6.90 4.55 10.53 0.00 0.00 3.70 0.00 0.00 0.00 13.64 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 2.17 0.00 0.00 2.17 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention CG17494 chr2L + chr2L_22477415_22477473 chr2L_22477414_22477415;chr2L_22477473_22477474 chr2L_22476854_22477414;chr2L_22477474_22478491 0.00 0.00 0.00 4.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor CG8080,REI_chr2R_4979159_4979234,I_chr2R_4979276_4979936,CG13741 chr2R - chr2R_4979377_4979936;chr2R_4979159_4979936 chr2R_4979276_4979936 chr2R_4979937_4980036;chr2R_4979059_4979158 7.14 4.35 6.67 0.00 12.50 0.00 7.14 7.14 4.26 7.69 27.27 6.67 15.79 8.33 8.70 2.78 5.88 12.50 5.00 5.88 30.00 22.22 8.33 3.45 7.14 16.67 11.76 NA NA 13.33 15.00 NA 4.76 3.45 14.29 NA 3.57 14.29 6.67 6.45 18.18 10.53 15.00 11.11 NA 6.90 6.67 11.76 4.55 5.56 10.34 5.00 0.00 20.00 9.38 10.00 3.70 0.00 K alternative_donor CG5694,RI_chr2L_10229956_10231366 chr2L - chr2L_10229956_10231282;chr2L_10229956_10231394 chr2L_10229956_10231538 chr2L_10229856_10229955;chr2L_10231539_10231648 33.33 33.33 35.71 26.92 25.00 38.46 25.93 50.00 37.78 20.00 10.00 42.31 60.00 42.86 30.00 35.90 15.38 35.29 59.26 25.00 16.67 12.50 34.62 42.11 30.00 33.33 9.09 0.00 46.67 16.67 46.67 45.45 28.57 40.62 23.08 28.57 36.36 25.00 33.33 31.82 38.46 36.36 11.11 52.38 50.00 30.77 40.00 35.00 43.90 46.67 5.56 25.00 20.00 42.86 23.08 42.86 22.22 33.33 K intron_retention I_chr2L_11009331_11009442,dUTPase,I_chr2L_11011380_11011453 chr2L + chr2L_11011394_11011471 chr2L_11011393_11011394;chr2L_11011471_11011472 chr2L_11011335_11011393;chr2L_11011472_11011553 100.00 100.00 99.12 100.00 98.99 100.00 100.00 99.26 99.23 100.00 100.00 99.49 100.00 100.00 99.22 100.00 100.00 98.94 100.00 98.81 100.00 100.00 99.42 100.00 100.00 100.00 100.00 100.00 100.00 98.63 100.00 98.53 97.30 99.32 100.00 100.00 100.00 100.00 100.00 99.15 100.00 100.00 98.94 100.00 100.00 100.00 100.00 100.00 99.57 99.45 100.00 100.00 97.89 100.00 99.22 99.31 99.39 98.28 K jcn_only_AD CG16812,E_chr2L_13223243_13223344 chr2L + chr2L_13222748_13222871 chr2L_13222798_13222871 chr2L_13222872_13223288;chr2L_13222734_13222747 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.85 0.00 0.00 3.23 2.22 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.67 2.27 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 K jcn_only_AA CG5871,NELF-A chr3R + chr3R_17047473_17047538 chr3R_17047473_17047531 chr3R_17047048_17047472;chr3R_17047539_17048572 100.00 97.50 95.45 100.00 96.77 100.00 100.00 95.56 92.65 NA 91.18 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 98.11 100.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 95.83 97.14 100.00 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 100.00 100.00 98.57 100.00 100.00 97.37 100.00 100.00 100.00 98.44 97.06 100.00 95.65 100.00 100.00 100.00 100.00 100.00 96.30 K alternative_donor CG4502,I_chr2L_7196721_7196787,I_chr2L_7196858_7204207 chr2L - chr2L_7196858_7203938;chr2L_7196858_7203934 chr2L_7196858_7203942 chr2L_7196788_7196857;chr2L_7203943_7204239 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 3.45 NA 7.14 5.56 0.00 6.67 6.25 0.00 0.00 9.09 0.00 0.00 11.11 NA 6.67 0.00 NA 0.00 0.00 NA 0.00 0.00 7.69 0.00 7.69 3.57 0.00 0.00 NA NA 12.50 7.14 0.00 4.35 7.14 0.00 NA 0.00 0.00 8.70 5.00 0.00 9.09 0.00 NA NA 0.00 0.00 NA 0.00 K jcn_only_AA CG4662 chr3R + chr3R_15677641_15677744 chr3R_15677641_15677741 chr3R_15677554_15677640;chr3R_15677745_15678147 20.30 12.00 21.21 26.32 NA 18.75 18.18 31.58 29.31 19.05 23.53 18.60 NA 25.00 25.00 16.13 20.83 13.79 17.86 18.33 13.64 16.67 21.74 28.89 30.77 11.76 30.23 25.00 16.67 27.78 20.59 23.08 9.76 23.26 13.79 14.81 44.19 19.35 16.33 24.64 21.88 16.90 14.29 12.82 12.77 31.43 19.15 28.89 21.57 13.64 17.65 21.43 26.19 NA 20.00 25.00 30.00 12.12 K intron_retention Vha13 chr3R - chr3R_15469401_15469459 chr3R_15469400_15469401;chr3R_15469459_15469460 chr3R_15468740_15469400;chr3R_15469460_15469560 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.22 0.46 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.15 0.00 1.02 0.31 0.93 0.88 3.21 0.00 0.00 0.00 0.11 0.47 0.00 0.28 0.10 0.29 0.00 0.14 0.75 0.00 0.00 0.00 0.46 0.56 0.00 0.26 0.39 0.00 0.15 0.00 0.39 0.00 0.49 0.13 0.00 0.19 K alternative_acceptor CG3499,I_chr2R_18772777_18772819 chr2R - chr2R_18772767_18772819 chr2R_18772777_18772819 chr2R_18772820_18772879;chr2R_18772677_18772766 0.00 0.00 0.00 1.09 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Adar,I_chrX_1668256_1682696,I_chrX_1674594_1674717 chrX + chrX_1674859_1676968 chrX_1674858_1674859;chrX_1676968_1676969 chrX_1674718_1674858;chrX_1676969_1677068 54.55 55.00 73.33 84.21 38.46 NA 54.55 87.10 51.28 NA NA 51.52 90.91 47.06 53.33 59.09 53.85 38.46 55.00 63.33 60.00 19.05 46.88 58.82 50.00 26.67 40.91 NA 33.33 50.00 29.63 61.54 43.48 64.29 61.90 80.00 61.11 31.58 38.10 45.16 NA 47.06 52.94 40.91 NA 47.06 68.75 32.00 57.58 57.14 66.67 43.75 54.55 71.43 55.00 58.82 90.00 65.00 N multi_cassette bwa,I_chr2L_20069515_20073377,I_chr2L_20073310_20073377 chr2L + chr2L_20066899_20072353 chr2L_20066899_20069047;chr2L_20069305_20069376;chr2L_20069515_20072353 chr2L_20069048_20069304;chr2L_20069377_20069514 chr2L_20066389_20066898;chr2L_20072354_20072646 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG11880,I_chr3R_24949827_24951052,CE_chr3R_24962426_24962797 chr3R + chr3R_24949827_24951129;chr3R_24949827_24951052 chr3R_24949827_24951126 chr3R_24949727_24949826;chr3R_24951130_24951152 93.83 99.00 90.35 94.44 93.97 96.26 90.38 93.53 96.26 94.57 92.39 93.90 96.63 88.18 93.43 93.57 94.00 91.26 94.83 93.75 95.12 94.95 91.60 91.01 86.42 91.50 93.94 91.56 93.98 94.96 93.40 94.44 91.21 93.41 93.83 88.00 96.26 94.74 97.30 94.03 92.73 94.14 100.00 94.54 92.36 95.56 91.49 93.69 94.44 95.08 90.99 89.66 98.00 100.00 93.29 90.00 93.67 90.64 K intron_retention CG10165 chr2L - chr2L_19527706_19527760 chr2L_19527705_19527706;chr2L_19527760_19527761 chr2L_19527275_19527705;chr2L_19527761_19527953 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 3.23 NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 3.03 NA 6.25 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Hr39,I_chr2L_21256047_21256260 chr2L + chr2L_21237347_21238280;chr2L_21237385_21238280;chr2L_21237364_21238280;chr2L_21237397_21238280;chr2L_21237405_21238280 chr2L_21237421_21238280 chr2L_21238281_21238529;chr2L_21237247_21237346 28.57 9.09 50.00 50.00 0.00 33.33 45.45 35.29 28.57 44.44 28.57 36.36 18.18 15.38 37.50 21.43 28.57 18.18 36.36 34.21 20.00 25.00 13.64 20.00 30.77 30.77 20.00 20.00 14.29 37.50 25.00 NA 45.45 36.36 37.50 36.36 NA 16.67 14.29 23.33 NA 20.00 50.00 17.65 25.00 22.22 16.67 38.89 33.33 37.50 36.36 25.00 50.00 NA 46.15 16.67 NA 50.00 K intron_retention Dscam,F_chr2R_3219886_3228832,FI_chr2R_3229124_3235353,FI_chr2R_3236481_3242386,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3217357_3217421 chr2R_3217356_3217357;chr2R_3217421_3217422 chr2R_3217248_3217356;chr2R_3217422_3218105 0.00 0.00 0.00 0.00 7.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Gp93,E_chr3R_23774640_23777523 chr3R + chr3R_23776317_23776649 chr3R_23776316_23776317;chr3R_23776649_23776650 chr3R_23775778_23776316;chr3R_23776650_23777882 0.00 0.30 0.00 0.09 0.00 0.00 0.12 0.28 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.74 0.21 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.30 0.00 0.00 0.00 0.00 0.00 0.31 0.00 K intron_retention Pi3K92E chr3R - chr3R_16456386_16456441 chr3R_16456385_16456386;chr3R_16456441_16456442 chr3R_16456079_16456385;chr3R_16456442_16457029 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.80 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette Lasp,I_chr3L_16671761_16673911,I_chr3L_16671780_16671907,R_chr3L_16672970_16673911,RI_chr3L_16674471_16704042 chr3L - chr3L_16671761_16673911 chr3L_16671761_16671907;chr3L_16673033_16673911 chr3L_16671908_16673032 chr3L_16671680_16671760;chr3L_16673912_16674011 99.54 99.68 99.25 99.74 99.58 99.13 99.74 99.20 99.38 100.00 99.59 99.79 100.00 99.44 99.25 99.59 99.48 98.24 99.55 99.62 100.00 94.78 99.52 99.54 99.72 98.40 99.14 100.00 99.82 98.75 99.52 99.64 99.26 99.74 98.77 99.74 99.55 99.58 99.08 99.01 98.48 99.82 99.40 98.94 98.31 99.70 99.38 99.08 99.78 99.68 99.20 100.00 99.68 100.00 100.00 98.92 99.34 98.57 K intron_retention CG17119,sav chr3R - chr3R_18880899_18881084 chr3R_18880898_18880899;chr3R_18881084_18881085 chr3R_18880610_18880898;chr3R_18881085_18881445 1.83 3.45 0.91 2.78 1.94 0.00 7.96 1.27 2.16 2.94 1.18 3.72 1.27 1.12 0.94 0.83 2.22 0.00 0.93 1.23 0.00 6.67 1.17 0.67 2.15 0.00 3.73 6.82 0.00 5.26 1.61 2.50 2.56 0.71 3.37 8.82 1.11 3.82 2.42 2.89 2.38 1.91 0.00 0.93 2.15 1.68 2.10 5.56 1.83 3.47 3.59 0.00 2.74 0.75 1.75 0.64 1.62 1.56 K jcn_only_AD CG7611,I_chr3L_21516702_21517821 chr3L + chr3L_21516330_21517821;chr3L_21516399_21517821;chr3L_21517168_21517821;chr3L_21516722_21517821;chr3L_21516501_21517821;chr3L_21516918_21517821;chr3L_21516343_21517821;chr3L_21516728_21517821 chr3L_21516706_21517821 chr3L_21517822_21517920;chr3L_21516311_21516329 17.39 18.18 16.00 2.63 0.00 10.71 30.51 9.52 16.00 NA NA 11.90 NA 17.39 16.00 19.23 25.00 6.67 NA 33.33 NA 12.00 18.18 27.27 NA 30.00 28.57 NA 13.64 NA 25.64 NA 20.00 14.29 NA 25.00 21.43 33.33 NA 16.67 NA 18.64 13.04 15.15 NA 16.67 19.05 19.05 19.67 NA NA NA NA NA 14.81 NA NA 10.00 K intron_retention scarface,I_chr2R_1568023_1575180 chr2R - chr2R_1567216_1567270 chr2R_1567215_1567216;chr2R_1567270_1567271 chr2R_1567063_1567215;chr2R_1567271_1568022 0.00 2.83 0.00 2.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.55 0.00 3.63 0.74 0.95 0.00 0.00 0.00 2.70 1.71 0.00 0.00 0.00 1.34 0.00 1.09 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Rpb8 chr3L + chr3L_21722217_21722287 chr3L_21722224_21722287 chr3L_21722288_21722991;chr3L_21721921_21722216 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 NA 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 NA NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.12 0.00 0.00 3.70 0.00 0.00 1.72 0.00 K jcn_only_AD I_chrX_20906749_20909772,Mgstl,noncoding_25026 chrX + chrX_20913675_20914706 chrX_20914329_20914706 chrX_20914707_20914747;chrX_20913482_20913674 100.00 100.00 99.36 99.79 99.62 100.00 100.00 100.00 100.00 99.35 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.62 99.72 100.00 100.00 99.69 100.00 99.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.77 99.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.82 99.65 99.72 99.81 100.00 99.63 100.00 99.58 100.00 100.00 99.49 100.00 99.71 100.00 100.00 99.05 99.81 K cassette nod,I_chrX_11475074_11475402 chrX + chrX_11475074_11475402 chrX_11475074_11475137;chrX_11475333_11475402 chrX_11475138_11475332 chrX_11474974_11475073;chrX_11475403_11475502 100.00 100.00 100.00 100.00 92.86 100.00 94.12 100.00 96.77 100.00 90.91 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 95.83 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 96.55 96.77 100.00 96.77 92.31 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.24 100.00 100.00 91.67 100.00 93.75 100.00 95.00 K jcn_only_AA CG3529,CG3552 chr3L + chr3L_9451458_9451520 chr3L_9451458_9451510 chr3L_9451296_9451457;chr3L_9451521_9452216 100.00 NA NA 95.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 95.24 NA NA NA NA NA 100.00 95.00 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 100.00 K intron_retention Lnk,RI_chr3R_21714780_21715376 chr3R + chr3R_21714419_21715376 chr3R_21714418_21714419;chr3R_21715376_21715377 chr3R_21714271_21714418;chr3R_21715377_21715476 50.49 44.44 64.29 56.52 46.67 63.16 45.45 62.50 50.98 25.00 63.64 58.97 60.00 55.00 50.00 65.79 46.15 40.91 58.62 42.86 63.64 30.77 45.95 52.00 57.14 57.14 29.41 36.36 29.41 33.33 46.67 46.67 53.85 60.53 72.22 58.82 23.08 36.00 32.14 52.78 NA 58.97 69.57 34.78 41.67 62.50 35.48 40.00 57.78 56.25 50.00 47.06 29.41 52.63 65.38 41.67 35.71 58.82 K intron_retention Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629597_2629913 chr3L_2629596_2629597;chr3L_2629913_2629914 chr3L_2629141_2629596;chr3L_2629914_2629921 48.72 41.67 30.19 60.47 41.18 45.00 36.54 48.28 48.19 NA 1.92 55.88 36.96 49.23 50.98 53.14 59.09 55.00 49.15 51.43 0.00 NA 48.48 46.15 56.25 43.86 70.83 NA 61.54 46.67 51.22 56.52 61.29 40.66 47.62 73.08 NA NA 53.33 45.65 43.75 44.87 39.02 35.29 41.67 46.67 41.67 53.76 54.03 45.45 48.72 50.00 75.00 NA 48.72 52.63 69.23 61.76 K alternative_donor Crk,RI_chr4_231302_233315,RI_chr4_231307_231369,RI_chr4_231307_232217,I_chr4_231307_232253 chr4 + chr4_231302_232215 chr4_231307_232215 chr4_232216_232420;chr4_231208_231301 100.00 90.91 100.00 94.12 NA 100.00 100.00 95.83 90.24 100.00 90.91 100.00 100.00 92.31 93.33 96.55 93.75 92.31 95.83 96.55 87.50 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 NA 87.50 NA 95.65 100.00 96.77 100.00 100.00 100.00 96.00 100.00 97.44 96.97 100.00 100.00 100.00 NA NA 96.00 100.00 100.00 97.56 K alternative_donor CG32250,RI_chr3L_4319452_4320137 chr3L + chr3L_4319260_4320137 chr3L_4319452_4320137 chr3L_4320138_4320237;chr3L_4319199_4319259 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 4.55 NA NA 0.00 NA NA 6.67 NA NA NA NA 0.00 NA 0.00 3.45 3.12 0.00 NA 14.29 NA 4.00 0.00 7.69 0.00 0.00 0.00 0.00 5.26 0.00 5.56 0.00 2.63 0.00 0.00 NA 0.00 0.00 0.00 NA 2.38 3.85 0.00 0.00 NA NA 0.00 NA 0.00 0.00 2.78 K jcn_only_AA Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911865_5913354;chr2R_5911803_5913354;chr2R_5911755_5913354 chr2R_5911708_5913354 chr2R_5913355_5913433;chr2R_5911703_5911707 56.20 NA 48.15 NA 61.90 NA NA 58.54 53.19 NA NA 35.48 NA 50.00 NA 64.00 53.85 NA 48.15 53.12 39.29 NA 60.87 NA NA NA NA NA NA 65.00 50.00 NA NA 62.16 NA NA NA NA NA 58.62 NA 60.53 NA 64.52 NA NA NA NA 50.00 NA NA NA NA NA 61.29 NA NA NA K intron_retention RpL15 chr3LHet + chr3LHet_2397820_2398143 chr3LHet_2397819_2397820;chr3LHet_2398143_2398144 chr3LHet_2397802_2397819;chr3LHet_2398144_2398454 99.88 100.00 100.00 99.88 100.00 99.85 100.00 99.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.87 99.90 99.95 99.83 98.90 100.00 100.00 100.00 99.85 100.00 91.23 99.65 99.48 99.93 97.61 97.99 99.75 99.05 99.31 99.38 100.00 100.00 98.32 98.31 99.74 99.83 99.49 99.20 98.73 99.42 99.23 100.00 100.00 100.00 100.00 97.92 100.00 99.61 100.00 99.56 98.44 K intron_retention dre4,I_chr3L_1875590_1875651,F_chr3L_1877432_1877517 chr3L - chr3L_1873063_1873116 chr3L_1873062_1873063;chr3L_1873116_1873117 chr3L_1872800_1873062;chr3L_1873117_1873983 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2629613_2629913;chr3L_2629585_2629913;chr3L_2629684_2629913;chr3L_2629527_2629913;chr3L_2629597_2629913 chr3L_2629579_2629913 chr3L_2629914_2629921;chr3L_2629427_2629526 0.24 0.50 0.00 0.25 0.58 0.00 0.41 0.15 0.21 2.17 0.63 0.00 0.24 0.00 0.23 0.00 0.47 0.56 0.27 0.00 0.00 0.00 0.34 0.58 1.03 0.24 0.49 2.56 0.00 0.56 0.00 0.00 0.44 0.19 0.00 0.81 0.53 0.69 0.43 0.00 0.00 1.15 0.00 0.51 0.00 0.00 0.00 0.00 0.12 0.93 0.33 0.72 0.00 0.00 0.21 0.64 0.77 0.00 K intron_retention RFI_chr2L_3030576_3030666,GABPI chr2L + chr2L_3030948_3030999 chr2L_3030947_3030948;chr2L_3030999_3031000 chr2L_3030776_3030947;chr2L_3031000_3031893 1.26 0.84 0.00 4.17 0.00 0.00 3.60 1.99 3.09 0.00 1.30 0.50 0.00 2.20 2.63 0.00 1.41 2.02 4.76 0.77 1.15 0.95 0.78 1.32 0.00 0.00 5.51 3.39 0.90 3.45 1.61 2.31 1.85 3.82 1.00 0.00 0.00 0.00 0.00 2.10 0.00 1.72 2.78 2.15 0.00 0.50 0.00 1.26 1.73 3.03 1.32 2.90 4.08 0.00 2.70 0.00 0.00 1.13 K jcn_only_AD Cctgamma chr3R + chr3R_12473318_12473557;chr3R_12473479_12473557;chr3R_12473420_12473557;chr3R_12473424_12473557;chr3R_12473464_12473557 chr3R_12473409_12473557 chr3R_12473558_12473651;chr3R_12473311_12473317 1.23 1.53 1.90 0.60 1.98 0.00 1.23 0.00 1.41 0.00 1.00 1.90 2.22 1.83 6.48 1.32 2.68 0.00 1.03 0.00 0.00 0.48 0.00 1.55 3.23 2.78 1.52 0.00 0.00 1.11 1.74 0.00 1.59 2.01 0.00 6.78 0.00 1.80 1.89 0.79 6.06 1.29 1.14 1.20 1.59 2.44 0.00 1.92 0.55 1.77 0.77 0.00 1.47 0.00 1.57 0.00 0.71 0.00 K jcn_only_AA Mocs1,I_chr3L_11064230_11064309 chr3L + chr3L_11064230_11064658 chr3L_11064230_11064309 chr3L_11064151_11064229;chr3L_11064659_11065510 4.17 0.00 NA 8.00 5.00 NA 7.41 0.00 11.54 3.85 NA 11.76 NA NA 4.76 14.29 NA NA NA 13.33 NA 4.60 0.00 8.82 3.03 NA 3.17 3.53 16.67 2.04 NA NA 1.59 10.00 2.86 2.63 0.00 7.89 2.04 4.17 1.64 9.52 NA 5.26 5.41 8.57 4.17 4.17 3.03 4.00 1.64 5.00 4.17 3.33 NA 0.00 3.70 0.00 K intron_retention CG3829 chr2R + chr2R_20873980_20874040 chr2R_20873979_20873980;chr2R_20874040_20874041 chr2R_20873478_20873979;chr2R_20874041_20874710 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA 95.00 NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA 100.00 K alternative_donor sli,RI_chr2R_11794739_11809143 chr2R - chr2R_11761183_11761827 chr2R_11761183_11761794 chr2R_11761040_11761182;chr2R_11761828_11761954 7.89 7.89 6.78 5.33 11.76 6.52 4.55 10.61 8.70 6.62 7.89 6.67 8.33 10.81 4.23 3.23 8.82 7.69 4.44 10.16 12.20 17.65 6.67 8.79 8.82 10.81 6.56 13.21 8.00 12.31 12.82 6.25 9.90 8.43 5.00 9.64 5.81 10.34 7.75 5.79 4.08 6.40 5.00 9.78 10.11 8.93 7.69 14.29 4.60 21.67 5.43 6.00 6.84 9.26 8.51 5.17 4.41 8.54 K jcn_only_AA CG32364 chr3L - chr3L_8203336_8203412 chr3L_8203358_8203412 chr3L_8203413_8203481;chr3L_8203272_8203335 93.33 95.74 92.41 96.30 96.30 93.00 90.73 94.12 88.26 93.98 94.95 95.48 95.41 96.97 90.48 96.13 92.63 89.76 93.33 88.62 94.00 91.12 91.70 91.71 93.89 91.67 93.42 93.38 87.68 97.16 96.97 92.13 91.83 93.45 95.62 94.51 90.17 95.07 92.71 93.79 89.68 93.24 89.13 93.23 93.02 90.14 99.31 86.98 94.04 91.55 98.01 87.30 94.41 92.74 93.90 94.09 95.75 89.56 K alternative_donor CG4433,I_chr3R_15845478_15846094 chr3R - chr3R_15845478_15846094;chr3R_15845478_15846006 chr3R_15845478_15846069 chr3R_15845378_15845477;chr3R_15846095_15846194 97.96 100.00 98.08 95.65 97.92 96.08 96.92 98.25 99.09 97.44 97.62 96.59 93.55 100.00 94.92 95.00 97.62 97.87 97.87 95.69 95.56 96.49 100.00 98.75 98.21 100.00 97.40 95.16 98.48 98.36 98.25 94.44 94.55 98.41 97.37 95.45 98.43 97.56 98.18 98.44 100.00 97.94 100.00 100.00 97.92 98.15 100.00 97.06 98.95 98.15 98.73 97.96 98.04 98.18 98.46 98.41 96.72 97.22 K intron_retention I_chr3R_16141663_16144698,CG5077,I_chr3R_16147605_16147670 chr3R + chr3R_16146597_16147197 chr3R_16146596_16146597;chr3R_16147197_16147198 chr3R_16146567_16146596;chr3R_16147198_16147358 96.97 93.75 100.00 100.00 100.00 100.00 96.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.78 100.00 100.00 95.00 96.30 93.75 100.00 95.45 96.30 100.00 92.31 94.74 92.86 100.00 91.67 94.74 100.00 91.67 96.77 100.00 90.91 96.00 87.50 96.15 100.00 NA 96.97 93.33 87.88 NA 85.71 100.00 NA 97.14 93.33 90.48 100.00 100.00 NA 100.00 100.00 87.50 88.89 K intron_retention CG11412,Tsp2A chrX + chrX_1237248_1237322 chrX_1237247_1237248;chrX_1237322_1237323 chrX_1236620_1237247;chrX_1237323_1237568 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 3.03 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.26 0.00 0.00 0.00 K alternative_donor CG2310,I_chr3R_25318474_25319142 chr3R - chr3R_25318474_25319136;chr3R_25318474_25319163;chr3R_25318474_25319142;chr3R_25318474_25318925;chr3R_25318474_25319093;chr3R_25318474_25319004;chr3R_25318474_25319167 chr3R_25318474_25318971 chr3R_25318374_25318473;chr3R_25319168_25319224 3.94 2.73 4.71 6.77 1.81 3.45 11.67 6.90 4.62 3.94 9.82 4.98 4.30 4.92 5.56 7.91 6.15 2.11 4.86 5.82 4.96 1.41 3.69 3.22 3.00 3.90 6.22 3.57 4.32 3.70 7.26 4.86 8.77 4.90 4.79 6.77 2.45 1.12 2.10 3.54 8.62 3.84 2.94 2.65 3.21 4.33 2.84 6.60 4.48 2.90 2.89 2.86 2.55 2.94 5.65 1.69 2.75 3.19 K alternative_acceptor svr,RI_chrX_421417_421591 chrX + chrX_396970_398700 chrX_396970_397394 chrX_396869_396969;chrX_398701_398818 43.75 39.13 68.75 56.25 46.15 35.71 72.22 60.00 54.72 27.27 42.86 42.42 77.78 50.00 36.36 66.67 47.83 50.00 80.00 52.50 53.33 41.67 24.32 28.57 33.33 42.86 43.75 50.00 37.50 31.25 41.18 46.15 33.33 57.50 40.91 40.00 22.73 35.71 26.67 36.67 33.33 51.43 52.63 50.00 63.64 39.13 66.67 27.27 52.94 75.00 42.11 36.84 41.67 53.85 56.25 61.54 55.56 30.56 K jcn_only_AA Arf79F,I_chr3L_22863166_22863946,I_chr3L_22863166_22864419,RI_chr3L_22863251_22863389,RI_chr3L_22863251_22863952,I_chr3L_22863251_22864009,I_chr3L_22863251_22864188,I_chr3L_22863251_22864501,I_chr3L_22863251_22864629,RI_chr3L_22863251_22864763,I_chr3L_22863251_22864866,RI_chr3L_22871119_22871250,I_chr3L_22871351_22871733 chr3L - chr3L_22863166_22864559 chr3L_22863251_22864559 chr3L_22864560_22864601;chr3L_22863151_22863165 98.14 97.16 98.68 98.19 97.22 97.94 98.32 98.14 98.41 96.09 97.95 98.96 99.15 97.16 98.12 97.52 99.50 96.89 98.10 99.27 98.18 98.05 95.55 98.28 98.58 98.28 97.96 97.39 97.88 95.26 95.42 98.92 98.24 97.69 98.93 97.81 96.59 95.78 99.20 96.49 99.36 99.78 99.00 98.13 98.68 98.57 98.97 98.67 98.33 97.03 97.30 97.21 98.28 98.27 98.44 98.70 97.22 97.52 K intron_retention CG1486 chrX + chrX_21197771_21197829 chrX_21197770_21197771;chrX_21197829_21197830 chrX_21197255_21197770;chrX_21197830_21198023 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Ptpmeg,I_chr3L_353688_353782,I_chr3L_355125_355175 chr3L + chr3L_348644_351366 chr3L_348643_348644;chr3L_351366_351367 chr3L_348610_348643;chr3L_351367_351663 77.78 NA NA NA NA NA NA 77.78 NA NA NA NA NA NA NA NA NA NA NA NA NA 68.75 NA NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA 75.00 NA 88.89 NA NA NA NA NA NA 77.78 NA NA NA NA NA NA NA NA NA K cassette CG7777,I_chr2R_7323928_7328572 chr2R + chr2R_7328996_7329439 chr2R_7328996_7329154;chr2R_7329378_7329439 chr2R_7329155_7329377 chr2R_7328790_7328995;chr2R_7329440_7329695 0.79 0.00 0.00 1.32 0.00 0.00 0.63 0.47 1.67 0.00 0.00 0.51 1.67 1.83 1.35 0.66 1.14 0.00 1.25 0.45 0.85 2.13 1.11 1.03 0.00 0.00 1.25 5.56 0.00 0.00 0.00 0.00 1.72 1.02 2.08 1.82 1.40 1.19 1.72 0.79 1.05 1.68 1.06 0.00 0.79 0.70 0.00 1.09 0.78 1.27 1.03 0.00 0.96 0.00 0.65 0.96 0.44 0.00 K alternative_donor achi,I_chr2R_8401767_8401934 chr2R - chr2R_8401767_8401848;chr2R_8401767_8402280 chr2R_8401767_8401934 chr2R_8401667_8401766;chr2R_8402281_8402519 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 4.35 NA NA 0.00 NA NA 0.00 0.00 0.00 NA 6.67 0.00 0.00 NA 0.00 0.00 6.67 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 5.56 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Cbp20 chr3R + chr3R_13990499_13990553 chr3R_13990498_13990499;chr3R_13990553_13990554 chr3R_13990442_13990498;chr3R_13990554_13990771 0.00 0.00 0.00 2.70 0.00 2.90 0.00 2.38 2.08 2.50 0.00 3.31 0.00 3.39 1.37 3.30 0.00 5.88 0.00 1.72 0.00 0.00 4.62 0.00 0.00 0.00 7.84 0.00 7.89 7.69 3.77 0.00 0.00 0.00 0.00 0.00 4.62 7.14 0.00 0.00 0.00 1.98 0.00 2.27 0.00 0.00 5.13 2.78 0.00 3.28 2.67 0.00 0.00 0.00 0.00 1.45 1.27 3.51 K alternative_donor CG42630,mtTFB1,F_chr3L_11702436_11702598 chr3L + chr3L_11702459_11702598 chr3L_11702536_11702598 chr3L_11702599_11702698;chr3L_11702030_11702458 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.81 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention norpA,I_chrX_4219265_4219380 chrX + chrX_4255142_4255998 chrX_4255141_4255142;chrX_4255998_4255999 chrX_4254745_4255141;chrX_4255999_4256951 90.91 NA NA NA NA NA 100.00 88.89 93.33 NA NA 80.00 NA 70.00 NA 87.50 NA NA NA 90.00 NA NA NA 80.00 NA NA NA NA NA NA NA NA NA 90.91 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 93.33 NA 100.00 100.00 NA NA NA NA NA NA K intron_retention Atpalpha,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16792336_16792829 chr3R_16792335_16792336;chr3R_16792829_16792830 chr3R_16792236_16792335;chr3R_16792830_16792924 2.19 2.35 2.00 2.24 2.92 2.55 2.82 2.29 2.51 4.24 4.60 3.08 2.71 2.33 1.74 1.97 2.56 2.07 0.92 1.28 2.46 3.86 2.19 1.68 3.64 2.11 3.78 8.24 2.11 1.81 2.76 1.55 1.03 2.42 1.77 3.36 2.51 1.69 2.39 2.86 2.14 2.36 2.58 0.69 1.86 2.00 0.00 2.97 1.80 0.85 1.70 1.66 0.41 0.54 2.32 1.23 1.51 1.72 K alternative_acceptor CG5585,I_chr3L_20339275_20339338,I_chr3L_20340649_20340712 chr3L - chr3L_20340649_20340712 chr3L_20340659_20340712 chr3L_20340713_20340780;chr3L_20340590_20340648 97.40 100.00 100.00 95.45 100.00 90.00 100.00 96.30 96.43 88.89 100.00 100.00 92.86 90.91 90.00 100.00 NA 100.00 100.00 97.50 100.00 91.67 95.83 94.12 100.00 92.31 93.75 100.00 100.00 90.91 76.47 90.00 100.00 95.24 91.67 100.00 100.00 90.91 100.00 100.00 100.00 96.55 100.00 100.00 93.33 88.24 100.00 94.44 96.30 100.00 100.00 100.00 100.00 90.91 92.86 90.91 100.00 97.30 K cassette Fas1,I_chr3R_12460976_12461267 chr3R + chr3R_12462299_12462707 chr3R_12462299_12462496;chr3R_12462533_12462707 chr3R_12462497_12462532 chr3R_12462151_12462298;chr3R_12462708_12462833 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 3.70 NA 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA 0.00 N intron_retention Gprk2 chr3R + chr3R_27280223_27280928 chr3R_27280222_27280223;chr3R_27280928_27280929 chr3R_27280117_27280222;chr3R_27280929_27281177 30.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG16758,I_chr3L_2501142_2502594,I_chr3L_2502724_2503142 chr3L - chr3L_2502724_2503142;chr3L_2501142_2503142 chr3L_2500463_2503142 chr3L_2503143_2503242 98.53 96.23 100.00 100.00 100.00 94.74 95.00 98.80 97.58 98.70 100.00 96.15 100.00 96.97 100.00 100.00 100.00 89.36 100.00 96.43 100.00 NA NA 95.83 NA 100.00 100.00 NA NA NA 100.00 100.00 91.89 98.82 95.00 NA 95.83 100.00 98.53 98.18 NA 98.15 96.77 100.00 86.67 100.00 95.83 97.06 97.92 NA 100.00 95.24 NA 92.31 95.56 96.67 100.00 100.00 K alternative_donor Chc,RI_chrX_15728405_15729273,I_chrX_15728405_15729401,I_chrX_15728946_15729357 chrX - chrX_15728405_15729260;chrX_15728405_15729370;chrX_15728405_15729476;chrX_15728405_15729319 chrX_15728405_15729357 chrX_15728305_15728404;chrX_15729477_15729501 87.01 86.96 86.36 82.14 82.76 85.42 86.86 90.06 87.34 87.50 91.43 87.69 91.14 85.71 86.67 87.50 86.36 80.43 86.02 86.61 86.96 88.00 87.69 90.24 90.00 81.97 88.10 90.62 75.00 88.24 87.78 84.62 92.59 87.01 84.44 82.22 92.31 84.21 96.43 82.26 100.00 87.68 90.14 87.50 100.00 86.96 96.15 84.85 87.65 78.95 81.63 87.50 83.33 71.43 86.67 91.30 91.30 86.67 K intron_retention I_chr3R_1183570_1183645,CG16708,E_chr3R_1185101_1187377 chr3R - chr3R_1185273_1185700 chr3R_1185272_1185273;chr3R_1185700_1185701 chr3R_1185070_1185272;chr3R_1185701_1187482 0.00 3.39 0.00 1.89 0.00 0.00 0.00 2.99 3.08 0.00 0.00 2.94 4.88 0.00 0.00 1.49 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 2.00 3.08 0.00 0.00 0.00 0.00 0.00 1.33 0.00 1.25 1.14 0.00 3.12 0.00 2.53 0.00 0.00 0.00 4.35 1.25 1.32 2.70 4.88 0.00 0.00 0.00 0.00 1.57 0.00 K alternative_donor CG15202,CG15201,I_chrX_11038283_11038356 chrX + chrX_11037224_11037291 chrX_11037228_11037291 chrX_11037292_11037360;chrX_11037165_11037223 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA 100.00 100.00 NA NA NA NA NA NA 100.00 NA K intron_retention CG9795 chr3R + chr3R_147770_148952 chr3R_147769_147770;chr3R_148952_148953 chr3R_147567_147769;chr3R_148953_149344 6.35 3.33 0.00 15.38 0.00 12.50 11.11 6.25 7.55 8.00 NA 8.33 12.50 8.33 11.43 6.25 0.00 NA 0.00 9.30 NA 4.00 9.52 9.68 0.00 9.52 3.03 0.00 6.90 0.00 3.03 8.33 2.50 6.67 3.57 6.45 0.00 0.00 0.00 3.41 2.94 11.11 5.56 0.00 7.69 4.00 9.68 0.00 8.70 10.00 4.76 9.09 6.25 8.33 10.71 8.00 7.69 5.06 K intron_retention Trc8 chr3R - chr3R_25325715_25325779 chr3R_25325714_25325715;chr3R_25325779_25325780 chr3R_25325353_25325714;chr3R_25325780_25325980 0.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.90 1.82 4.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14446 chrX + chrX_6121949_6122009 chrX_6121948_6121949;chrX_6122009_6122010 chrX_6121051_6121948;chrX_6122010_6122167 6.25 6.25 5.56 11.76 NA 0.00 10.00 18.18 20.69 0.00 NA 16.67 17.65 29.41 17.65 NA NA NA NA 0.00 NA 0.00 12.50 0.00 NA NA 0.00 NA 4.35 0.00 5.56 0.00 0.00 9.52 NA 6.25 0.00 NA 0.00 6.45 NA 14.81 NA 9.52 NA NA NA 0.00 15.38 NA NA NA NA NA NA NA NA NA N cassette spin,I_chr2R_12013288_12013847 chr2R + chr2R_12013288_12019813 chr2R_12013288_12019046;chr2R_12019405_12019813 chr2R_12019047_12019404 chr2R_12013188_12013287;chr2R_12019814_12020063 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.93 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG1347 chr3R + chr3R_1495515_1499211;chr3R_1495452_1499211 chr3R_1496295_1499211 chr3R_1499212_1502282;chr3R_1495435_1495451 97.44 100.00 100.00 90.38 89.29 95.45 96.55 95.45 100.00 NA 100.00 81.36 92.31 96.88 98.04 98.04 100.00 95.24 97.50 95.59 100.00 97.67 100.00 100.00 100.00 100.00 100.00 97.06 88.10 97.37 96.88 NA 95.24 95.83 100.00 100.00 97.14 100.00 100.00 100.00 NA 98.39 96.67 95.74 NA 100.00 95.83 97.56 95.59 NA 95.12 NA NA NA 96.30 NA NA NA K jcn_only_AD CG31999,I_chr4_240711_240769,I_chr4_243657_244182 chr4 - chr4_239517_240531;chr4_239517_240516 chr4_239517_239863 chr4_239079_239516;chr4_240532_240654 1.16 0.89 2.54 0.00 0.00 2.30 0.81 0.51 2.11 0.00 6.10 1.05 0.00 0.00 0.00 0.00 1.04 32.10 0.84 2.43 3.30 1.96 1.11 1.80 5.48 1.28 0.00 2.27 2.08 1.16 1.36 0.00 1.71 1.18 0.00 0.00 3.82 2.53 3.05 2.27 2.86 0.48 1.12 0.00 3.77 0.00 0.00 3.64 0.93 0.90 0.82 1.27 0.00 3.12 1.37 0.00 1.35 2.16 K intron_retention noncoding_23928 chrX - chrX_15701729_15701798 chrX_15701728_15701729;chrX_15701798_15701799 chrX_15701486_15701728;chrX_15701799_15701985 88.89 87.50 NA 90.00 90.00 NA 72.73 94.12 91.30 NA NA 92.86 90.00 71.43 84.62 94.44 83.33 72.73 90.00 80.00 100.00 NA 100.00 75.00 90.00 NA 93.33 NA 66.67 90.91 66.67 NA NA 93.33 NA NA 58.33 91.67 NA 80.00 NA 88.89 NA 75.00 NA NA 81.25 70.00 82.35 93.75 84.62 90.00 66.67 NA 100.00 71.43 88.89 NA K cassette sec31,I_chr2R_4783150_4783708 chr2R + chr2R_4783150_4783458;chr2R_4783150_4783455 chr2R_4783150_4783291;chr2R_4783349_4783455,chr2R_4783349_4783458 chr2R_4783292_4783348 chr2R_4783050_4783149;chr2R_4783459_4783558 1.82 1.24 0.91 1.02 0.88 2.04 3.18 1.08 0.64 2.67 0.98 0.97 3.60 1.82 0.70 0.93 1.46 2.80 2.00 1.89 0.92 6.00 2.07 1.45 2.94 3.19 1.47 3.88 3.10 2.27 1.61 3.61 2.92 1.56 2.13 10.75 1.97 1.61 2.50 3.32 2.30 1.62 2.44 2.38 6.06 1.68 1.43 4.60 1.14 1.42 1.76 1.36 2.06 1.14 1.56 1.88 0.95 1.03 K intron_retention CG16971,I_chr3L_225856_225909,RI_chr3L_225919_226004,noncoding_9600,RI_chr3L_229245_229590,I_chr3L_229245_229599,I_chr3L_229245_230186,I_chr3L_229653_229708 chr3L + chr3L_229245_229588 chr3L_229244_229245;chr3L_229588_229589 chr3L_229145_229244;chr3L_229589_229652 92.62 95.37 94.19 97.22 98.82 96.82 92.46 98.91 95.28 76.57 79.71 98.15 94.06 96.88 95.06 98.35 96.91 94.32 95.96 92.62 86.84 89.53 92.75 93.71 90.29 86.90 91.84 84.94 58.23 95.67 95.98 91.98 78.22 96.41 89.78 87.58 90.46 91.15 86.26 88.04 78.75 96.74 95.20 89.89 80.46 89.08 89.36 89.39 97.04 91.96 92.29 90.76 93.71 93.84 96.15 89.32 93.12 92.70 K jcn_only_AD CG10627,RI_chr3L_12522349_12522442,I_chr3L_12522349_12523038 chr3L - chr3L_12522349_12523034 chr3L_12522349_12522442 chr3L_12522249_12522348;chr3L_12523035_12523548 0.84 0.00 1.05 0.85 1.67 1.23 0.00 0.84 0.55 0.00 3.12 0.00 0.00 1.85 0.00 1.16 0.00 0.00 0.00 1.20 2.35 0.00 0.66 0.70 3.17 2.30 3.52 0.71 2.22 1.09 5.56 0.00 0.00 0.85 0.00 1.10 1.15 0.00 0.52 1.18 0.00 1.09 0.00 3.23 1.33 2.22 2.74 0.00 0.70 0.80 0.00 0.00 0.00 2.41 0.97 1.90 1.37 0.00 K alternative_acceptor RpS26 chr2L - chr2L_18443071_18443152 chr2L_18443074_18443152 chr2L_18443153_18443237;chr2L_18442505_18443070 0.61 0.53 0.58 0.56 0.60 0.61 0.56 0.51 0.54 0.83 0.54 0.55 0.52 0.52 0.58 0.62 0.49 0.56 0.64 0.61 0.55 0.70 0.53 0.59 0.75 0.53 0.67 1.14 1.00 0.86 0.62 1.19 1.14 0.62 0.77 0.70 0.62 0.62 0.61 0.69 1.20 0.59 0.61 0.63 0.85 1.00 0.52 1.26 0.52 0.54 0.57 0.63 0.65 0.56 0.55 0.60 0.63 1.17 K intron_retention CG3793 chr2L + chr2L_15765209_15765272 chr2L_15765208_15765209;chr2L_15765272_15765273 chr2L_15764783_15765208;chr2L_15765273_15765577 0.00 6.82 3.85 2.41 0.00 0.00 1.61 1.56 1.96 0.00 0.00 3.61 0.00 0.00 3.92 0.00 0.00 4.35 0.00 3.60 4.55 0.00 0.00 1.33 0.00 0.00 7.02 8.82 9.30 0.00 0.00 3.03 0.00 0.00 0.00 0.00 1.83 4.17 0.00 1.54 0.00 1.90 0.00 0.00 0.00 4.17 2.17 0.00 2.27 3.95 0.00 0.00 0.00 0.00 3.64 1.45 0.00 0.00 K alternative_donor CG31217 chr3R - chr3R_12479557_12479627 chr3R_12479557_12479623 chr3R_12479253_12479556;chr3R_12479628_12480093 88.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 88.89 K intron_retention tna chr3L + chr3L_10851787_10863140 chr3L_10851786_10851787;chr3L_10863140_10863141 chr3L_10851215_10851786;chr3L_10863141_10863453 14.29 NA 25.00 19.35 NA 14.29 31.82 26.67 20.00 NA 14.29 28.00 20.00 45.45 20.00 30.30 11.76 13.33 11.76 24.24 14.29 12.50 0.00 11.76 NA 30.77 14.29 NA NA 14.29 29.41 NA NA 25.00 NA NA 0.00 0.00 NA 14.29 NA 13.79 23.53 7.69 NA NA NA NA 17.50 5.56 0.00 NA NA NA 21.05 NA NA NA K intron_retention ena chr2R + chr2R_15029276_15029711 chr2R_15029275_15029276;chr2R_15029711_15029712 chr2R_15029150_15029275;chr2R_15029712_15029859 53.85 57.14 64.10 63.33 47.22 62.50 58.82 81.43 55.21 33.33 60.00 66.29 56.41 54.17 65.00 45.68 54.76 62.50 69.57 54.55 59.38 43.75 48.84 41.18 65.00 66.67 30.23 35.71 75.00 32.26 52.00 53.85 36.36 60.81 45.95 47.50 50.00 42.31 50.00 50.00 70.59 63.24 60.98 50.00 60.00 45.45 33.33 52.17 52.58 55.00 43.40 43.33 40.91 46.67 66.07 56.00 30.00 40.00 K intron_retention Pop2,RI_chr3L_11992097_11993849,noncoding_12152 chr3L - chr3L_11994191_11995685 chr3L_11994190_11994191;chr3L_11995685_11995686 chr3L_11993850_11994190;chr3L_11995686_11995985 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_927771_929704,CG32021,RI_chr4_928180_928245,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_928177_928245;chr4_928193_928245 chr4_928180_928245 chr4_928246_928314;chr4_928109_928176 27.27 50.00 26.67 25.00 21.95 31.25 31.06 26.53 21.11 35.59 17.07 28.24 24.14 25.81 18.18 29.51 32.35 24.49 12.20 30.26 25.00 28.23 22.77 26.74 29.23 21.21 29.33 25.45 22.97 31.87 26.72 22.73 30.61 26.44 25.76 34.67 28.72 34.85 34.95 20.86 34.62 31.52 26.00 28.08 18.87 31.71 23.53 28.85 27.27 29.55 21.11 26.15 34.62 27.50 33.33 32.73 29.79 19.57 K intron_retention janA,RI_chr3R_25864678_25864966,I_chr3R_25864692_25864783,I_chr3R_25871509_25871807 chr3R - chr3R_25864678_25864966 chr3R_25864677_25864678;chr3R_25864966_25864967 chr3R_25864592_25864677;chr3R_25864967_25865066 6.28 NA NA 10.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 5.88 6.67 K intron_retention Dystrophin chr3R + chr3R_15420121_15420221 chr3R_15420120_15420121;chr3R_15420221_15420222 chr3R_15420091_15420120;chr3R_15420222_15420680 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG17082,R_chr2R_642176_644740,RI_chr2R_644671_645068,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_644671_644740 chr2R_644670_644671;chr2R_644740_644741 chr2R_644571_644670;chr2R_644741_644840 0.00 0.00 0.00 0.00 NA 0.00 1.49 0.00 3.33 NA 0.00 0.00 0.00 0.00 0.00 6.25 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 5.56 0.00 NA NA 0.00 4.35 0.00 0.00 4.76 0.00 0.00 NA NA NA 0.00 NA 0.00 4.35 0.00 0.00 4.00 NA 0.00 4.62 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 K intron_retention l(2)k05819,I_chr2L_4396173_4396266 chr2L + chr2L_4396128_4396809 chr2L_4396127_4396128;chr2L_4396809_4396810 chr2L_4396073_4396127;chr2L_4396810_4396906 33.33 36.73 37.93 44.29 28.85 32.65 32.88 34.62 25.74 29.03 44.44 28.12 39.02 41.46 46.15 29.17 18.75 50.00 50.00 36.64 36.17 36.00 30.00 39.29 22.45 65.62 46.48 67.86 25.86 42.86 32.14 52.38 22.22 27.50 34.21 61.22 19.27 22.22 31.63 34.25 31.82 29.20 39.47 24.69 37.50 41.67 31.43 33.33 31.40 52.00 29.51 28.21 24.14 30.77 42.86 29.41 21.43 38.46 K intron_retention Slip1,RI_chr4_684967_689045,I_chr4_685717_686576,RI_chr4_685717_689045,RI_chr4_687548_689045 chr4 + chr4_684967_686576 chr4_684966_684967;chr4_686576_686577 chr4_684914_684966;chr4_686577_686676 7.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG33170,RI_chr3L_22859073_22860499,I_chr3L_22859135_22860499 chr3L + chr3L_22859073_22860499;chr3L_22860419_22860499;chr3L_22859061_22860499 chr3L_22859135_22860499 chr3L_22860500_22860559 3.08 2.41 3.75 8.16 2.33 6.82 2.20 8.16 7.23 0.00 7.14 5.44 28.57 8.14 3.09 0.63 6.85 3.08 4.60 3.36 9.43 1.85 1.96 3.57 2.04 1.39 5.26 0.00 2.35 1.18 9.57 0.00 2.65 5.71 1.56 5.88 4.29 10.53 0.00 0.00 3.87 5.00 1.45 2.84 2.34 2.33 3.03 2.11 0.61 7.76 5.88 7.61 2.38 3.70 0.96 5.71 0.76 1.11 K cassette CG40045,RI_chr3L_24023955_24028531,RI_chr3L_24023958_24028536,I_chr3L_24024771_24028531,I_chr3L_24025959_24028531 chr3L + chr3L_24023958_24028531;chr3L_24024771_24028531 chr3L_24024771_24027977,chr3L_24023958_24027977;chr3L_24028119_24028531 chr3L_24027978_24028118 chr3L_24023858_24023957;chr3L_24028532_24028600 2.21 2.99 2.13 1.37 1.15 2.44 1.69 3.53 2.46 0.00 1.98 3.51 1.01 1.68 2.99 2.20 2.21 2.80 2.82 1.64 2.04 8.25 3.85 3.25 1.23 3.33 4.17 2.94 2.04 2.80 4.38 0.83 0.83 2.61 3.25 3.53 0.00 3.39 6.06 6.52 1.07 2.79 2.48 1.40 0.72 1.66 1.89 1.30 2.93 1.88 2.05 1.85 5.38 2.78 3.14 2.07 2.04 1.27 K alternative_donor Pi3K21B,I_chr2L_301774_302025,I_chr2L_301945_302025 chr2L + chr2L_301945_302025;chr2L_301774_302025 chr2L_299919_302025 chr2L_302026_302125;chr2L_299033_299918 100.00 100.00 100.00 98.63 100.00 100.00 98.39 98.68 100.00 100.00 100.00 98.89 100.00 100.00 100.00 98.81 100.00 100.00 100.00 100.00 100.00 98.28 100.00 100.00 100.00 100.00 98.28 93.44 97.56 100.00 100.00 100.00 100.00 98.70 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor CEI_chrX_17177009_17196871,CG5445,I_chrX_17196752_17196871,RI_chrX_17196772_17196871,I_chrX_17196820_17196875,I_chrX_17198393_17198730 chrX + chrX_17196820_17196875 chrX_17196820_17196871 chrX_17196720_17196819;chrX_17196876_17196971 100.00 100.00 90.91 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA 88.89 100.00 NA NA 100.00 95.45 NA 100.00 100.00 100.00 NA 100.00 92.86 90.91 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 NA 90.00 94.44 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 91.67 100.00 90.91 100.00 K jcn_only_AD Vrp1,I_chr2R_17997529_17997692 chr2R - chr2R_17997529_17997710 chr2R_17997529_17997692 chr2R_17997429_17997528;chr2R_17997711_17997792 5.71 7.04 4.17 1.19 5.71 4.44 6.78 6.12 3.70 9.09 3.57 7.00 7.89 2.63 10.87 0.00 0.00 4.65 7.14 5.50 4.76 8.27 4.23 7.69 3.08 7.41 11.90 2.56 7.41 5.26 0.00 9.09 2.94 6.25 8.70 2.56 3.49 9.76 3.30 6.60 9.43 6.25 2.70 6.90 0.98 7.55 6.90 8.45 5.68 0.00 5.00 2.78 0.00 7.89 7.14 8.82 4.08 9.52 K intron_retention I_chr2R_17052549_17053657,LSm1 chr2R - chr2R_17057991_17058044 chr2R_17057990_17057991;chr2R_17058044_17058045 chr2R_17057806_17057990;chr2R_17058045_17058151 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.36 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.90 0.00 0.00 1.37 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.97 0.00 K intron_retention CG7519 chr3L + chr3L_21486297_21486347 chr3L_21486296_21486297;chr3L_21486347_21486348 chr3L_21486191_21486296;chr3L_21486348_21486455 0.00 0.00 0.00 17.65 0.00 0.00 0.00 4.55 4.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 6.67 0.00 0.00 0.00 NA 14.29 8.70 22.22 NA 0.00 4.35 5.88 NA 7.69 0.00 0.00 0.00 NA 8.70 6.67 NA 2.86 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 7.41 0.00 5.77 4.17 K intron_retention CG2135 chr3R - chr3R_27595569_27595622 chr3R_27595568_27595569;chr3R_27595622_27595623 chr3R_27595430_27595568;chr3R_27595623_27595809 0.00 0.00 4.08 11.63 5.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 2.04 1.59 9.38 8.33 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12914849_12916177;chr2R_12914834_12916177;chr2R_12914845_12916177 chr2R_12914941_12916177 chr2R_12916178_12916526;chr2R_12914830_12914833 0.00 NA 0.00 0.00 NA 14.29 5.56 0.00 4.00 NA NA 4.55 0.00 0.00 11.11 4.76 0.00 NA 0.00 NA NA 17.65 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 NA 0.00 0.00 10.00 0.00 NA NA NA 9.09 NA 7.69 11.11 0.00 NA 0.00 NA 0.00 5.00 NA 0.00 NA NA NA 10.00 NA NA 0.00 K intron_retention CG13384 chr2L + chr2L_8387832_8387890 chr2L_8387831_8387832;chr2L_8387890_8387891 chr2L_8387659_8387831;chr2L_8387891_8388766 0.22 0.19 0.54 0.18 0.00 0.21 0.45 0.22 0.54 0.25 0.00 0.39 0.00 0.45 0.71 0.45 0.70 0.00 0.17 0.32 0.19 0.00 0.00 0.28 0.48 0.65 1.66 2.20 0.00 0.00 0.17 0.41 0.34 0.51 0.00 0.97 0.17 0.00 0.34 0.38 0.40 0.19 0.00 0.00 0.38 0.13 0.64 0.29 0.66 0.00 0.16 0.00 0.00 0.00 0.47 0.00 0.00 0.28 K intron_retention Klc,I_chr3L_12741779_12743062,I_chr3L_12741783_12742943,I_chr3L_12741838_12743062 chr3L - chr3L_12741783_12742943 chr3L_12741782_12741783;chr3L_12742943_12742944 chr3L_12741738_12741782;chr3L_12742944_12742998 30.38 NA NA 12.50 NA NA 11.76 13.04 30.00 NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA 35.29 NA NA NA NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA K intron_retention CG3493 chr2R - chr2R_19263760_19263813 chr2R_19263759_19263760;chr2R_19263813_19263814 chr2R_19263556_19263759;chr2R_19263814_19263989 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 5.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Aldolase,I_chr3R_22083764_22086684,I_chr3R_22086804_22086875 chr3R - chr3R_22083764_22087057;chr3R_22083764_22086879 chr3R_22083764_22086875 chr3R_22083664_22083763;chr3R_22087058_22087313 0.51 0.31 0.60 0.60 0.00 0.37 0.68 0.23 0.64 0.21 0.58 0.18 0.48 0.37 1.18 0.80 1.16 0.30 1.23 0.34 0.33 0.22 0.42 0.64 0.41 0.34 0.75 0.55 0.47 0.59 0.71 0.00 0.67 1.10 0.97 0.87 0.18 0.00 0.25 0.91 0.46 0.50 0.44 0.27 0.00 0.69 0.40 0.58 1.00 0.55 0.92 0.61 0.51 1.03 0.71 0.00 0.52 0.00 K intron_retention exba,I_chr3R_1425087_1425925,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1422926_1422993 chr3R_1422925_1422926;chr3R_1422993_1422994 chr3R_1422583_1422925;chr3R_1422994_1423237 0.00 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 1.18 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K mutually_exclusive gish,RI_chr3R_12118557_12122383 chr3R + chr3R_12118557_12121390,chr3R_12121543_12122383 chr3R_12118557_12119708,chr3R_12119876_12122383 chr3R_12121391_12121542 chr3R_12119709_12119875 chr3R_12118496_12118556;chr3R_12122384_12122483 69.81 65.52 65.71 66.67 66.67 63.64 75.00 69.64 68.29 53.33 70.00 68.33 72.73 66.67 74.29 67.19 71.88 70.37 73.17 48.53 79.17 67.74 77.36 75.00 68.00 73.08 74.29 75.00 77.27 60.00 62.86 64.71 70.37 74.67 50.00 60.71 68.18 73.68 69.23 69.81 65.22 70.59 72.00 78.38 70.00 72.73 69.23 67.86 66.67 72.73 73.08 71.88 71.43 68.18 72.97 75.00 67.86 62.07 K intron_retention CG3246,msl-2 chr2L - chr2L_3461707_3461769 chr2L_3461706_3461707;chr2L_3461769_3461770 chr2L_3461438_3461706;chr2L_3461770_3462010 0.00 NA NA NA NA NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA 9.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA 0.00 NA NA NA 0.00 NA K jcn_only_AA CG7028,I_chr3L_207277_208117 chr3L - chr3L_209711_209783 chr3L_209714_209783 chr3L_209784_210399;chr3L_209450_209710 95.92 93.55 93.88 94.74 100.00 94.44 96.23 94.62 96.10 NA 93.55 95.56 100.00 87.50 88.89 97.56 96.67 97.06 97.22 98.80 100.00 100.00 94.87 95.45 96.15 100.00 94.34 93.18 98.00 90.48 97.30 92.31 97.83 93.06 94.74 87.88 97.92 96.97 94.59 95.05 95.35 98.80 94.44 100.00 95.83 98.61 97.14 95.92 95.31 96.88 95.74 100.00 94.74 100.00 97.83 93.55 NA 98.94 K intron_retention Abl,I_chr3L_16622304_16639909,RI_chr3L_16652567_16654512 chr3L - chr3L_16619717_16619842 chr3L_16619716_16619717;chr3L_16619842_16619843 chr3L_16619628_16619716;chr3L_16619843_16619963 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 1.61 0.00 0.00 0.00 2.73 1.74 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG5708,I_chr2L_10225966_10226334,I_chr2L_10225966_10226377 chr2L - chr2L_10225812_10226664 chr2L_10225812_10225873;chr2L_10225966_10226664 chr2L_10225874_10225965 chr2L_10225504_10225811;chr2L_10226665_10226909 60.71 53.33 84.21 68.75 66.67 52.63 66.67 69.23 62.50 55.56 66.67 69.23 74.07 50.00 63.16 60.78 90.00 66.67 70.97 65.62 58.33 47.37 48.65 56.25 52.17 45.00 63.64 60.00 63.64 56.25 70.83 56.25 55.56 73.47 46.15 46.67 50.00 57.14 87.50 58.82 75.00 63.04 60.71 45.95 75.00 57.58 72.00 60.00 74.00 57.69 64.10 59.26 50.00 64.71 56.67 51.28 57.50 62.96 K alternative_acceptor PRL-1,RI_chr2L_16249092_16249188,RI_chr2L_16249092_16249286,RI_chr2L_16249092_16250080,I_chr2L_16250028_16250080 chr2L - chr2L_16250028_16250080;chr2L_16249722_16250080;chr2L_16249707_16250080 chr2L_16249092_16250080 chr2L_16250081_16250158;chr2L_16248992_16249091 2.66 3.60 0.69 2.23 0.00 1.59 2.84 1.52 3.41 3.23 0.86 2.66 3.50 0.62 2.21 2.27 1.40 2.65 2.27 3.54 0.86 4.90 4.19 1.41 4.08 1.68 4.79 4.12 3.09 9.45 4.19 1.37 3.08 1.74 3.81 0.81 3.70 3.80 1.11 4.31 2.35 3.03 2.94 2.14 1.27 2.26 4.88 0.52 3.12 7.04 4.70 4.31 2.90 2.04 1.20 1.19 2.97 2.27 K alternative_donor mbf1,RI_chr3L_16567888_16567952,RI_chr3L_16568077_16568816 chr3L + chr3L_16567888_16567952;chr3L_16567853_16567952 chr3L_16567770_16567952 chr3L_16567953_16568052;chr3L_16567701_16567769 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.70 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA eIF5,RI_chrX_15883163_15883424,I_chrX_15883297_15883424,EI_chrX_15885411_15885854,RI_chrX_15885416_15885611 chrX - chrX_15883163_15883424;chrX_15883302_15883424;chrX_15883143_15883424 chrX_15883360_15883424 chrX_15883425_15883509;chrX_15883079_15883142 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 K jcn_only_AD Rab23,I_chr3R_1508710_1508882 chr3R - chr3R_1508710_1508882;chr3R_1508710_1510597 chr3R_1508710_1511119 chr3R_1508610_1508709;chr3R_1511120_1511186 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette sdk,I_chrX_625220_634459,I_chrX_636395_636562 chrX + chrX_625220_634459 chrX_625220_631201;chrX_631322_634459 chrX_631202_631321 chrX_625214_625219;chrX_634460_634559 83.33 NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA 75.00 83.33 NA NA NA NA NA 83.33 85.71 100.00 NA 85.71 66.67 NA NA 71.43 NA NA NA NA NA NA NA NA NA NA 92.31 NA NA NA NA NA NA NA NA NA NA N jcn_only_AA Aats-val,I_chr2R_9088330_9088393,I_chr2R_9088412_9088502 chr2R + chr2R_9088330_9088393;chr2R_9088330_9088517 chr2R_9088330_9088502 chr2R_9088312_9088329;chr2R_9088518_9088602 100.00 100.00 99.33 98.83 99.31 100.00 99.64 99.48 99.62 99.36 100.00 100.00 100.00 100.00 100.00 99.25 99.17 100.00 100.00 100.00 100.00 100.00 100.00 99.15 100.00 100.00 99.68 96.57 96.83 100.00 98.82 99.27 100.00 100.00 100.00 100.00 99.44 100.00 99.22 98.85 100.00 100.00 100.00 100.00 99.30 100.00 100.00 99.33 100.00 100.00 99.64 100.00 100.00 99.47 99.37 99.52 100.00 99.02 K alternative_donor akirin,I_chr3L_7363173_7364806,I_chr3L_7363177_7364806,I_chr3L_7363177_7364831,I_chr3L_7363211_7364831,I_chr3L_7363731_7364806,I_chr3L_7364126_7364806,RI_chr3L_7364737_7364806 chr3L + chr3L_7363169_7364806 chr3L_7363285_7364806 chr3L_7364807_7364906;chr3L_7363111_7363168 69.62 67.10 74.65 65.84 70.18 76.19 70.21 63.14 70.08 64.71 67.72 63.16 65.36 70.50 70.32 62.90 68.39 71.56 77.51 58.50 79.39 73.77 67.84 68.57 71.11 69.62 62.50 57.05 67.31 62.59 73.03 68.12 67.96 69.71 68.22 74.11 68.79 66.96 70.30 66.84 79.78 70.15 72.52 70.51 74.65 73.13 69.81 80.16 68.29 64.29 66.47 64.52 77.63 67.05 77.46 68.97 71.54 79.17 K jcn_only_AD CG8709,I_chr2R_4027128_4027182,RI_chr2R_4029534_4029599,I_chr2R_4030580_4030746,I_chr2R_4035901_4043493 chr2R - chr2R_4029534_4029603 chr2R_4029534_4029599 chr2R_4029434_4029533;chr2R_4029604_4029699 0.76 0.00 0.00 0.00 1.56 0.00 0.00 2.78 0.65 2.04 0.00 0.70 0.00 0.00 0.00 0.00 2.13 5.45 1.72 0.82 2.38 0.76 0.00 0.00 0.00 0.00 2.67 3.45 2.06 2.53 1.59 2.22 2.17 1.63 0.00 0.00 0.00 0.00 0.93 0.76 0.00 1.78 0.00 0.00 1.27 1.22 1.96 1.67 1.72 0.00 1.18 0.00 3.23 0.00 0.00 2.44 0.00 1.80 K intron_retention CG9003,I_chr2R_7531685_7531831,RI_chr2R_7538713_7538828 chr2R - chr2R_7531922_7531989 chr2R_7531921_7531922;chr2R_7531989_7531990 chr2R_7531832_7531921;chr2R_7531990_7532084 0.00 0.00 0.00 6.25 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 1.75 0.00 2.22 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.92 0.00 7.14 NA 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention ssh,I_chr3R_20769244_20770111 chr3R - chr3R_20765527_20765594 chr3R_20765526_20765527;chr3R_20765594_20765595 chr3R_20765155_20765526;chr3R_20765595_20767503 80.00 80.00 72.22 92.31 77.78 93.75 80.00 83.33 80.00 68.18 73.33 77.42 91.67 93.75 95.65 88.89 93.75 80.00 80.00 84.38 87.50 65.91 81.63 68.89 75.86 82.35 75.56 88.57 83.72 87.88 94.74 60.00 60.71 89.66 81.48 65.71 71.19 75.61 75.44 67.31 71.05 78.26 80.00 74.42 64.52 76.92 80.95 63.64 87.50 79.07 81.40 84.00 65.71 67.35 89.47 76.74 75.76 62.96 K intron_retention CG11347,I_chr3L_4412551_4417819 chr3L + chr3L_4419173_4419428 chr3L_4419172_4419173;chr3L_4419428_4419429 chr3L_4418782_4419172;chr3L_4419429_4419663 20.59 19.05 13.64 20.00 14.29 0.00 17.65 25.00 24.32 NA 14.29 18.92 18.75 30.77 12.50 30.00 26.67 26.67 27.78 30.43 20.00 10.00 19.44 25.00 22.73 20.00 41.38 24.14 20.59 17.65 17.39 20.00 13.64 27.27 18.18 25.81 17.65 19.05 26.32 10.91 20.00 21.05 25.00 31.25 27.03 13.79 21.15 16.67 27.27 17.50 20.59 NA 21.74 14.81 22.22 25.00 28.12 22.73 K intron_retention drpr,I_chr3L_1718097_1718705,I_chr3L_1718154_1723579,I_chr3L_1720385_1723579,CG18171 chr3L - chr3L_1718154_1718705 chr3L_1718153_1718154;chr3L_1718705_1718706 chr3L_1718054_1718153;chr3L_1718706_1718805 1.76 0.00 0.00 3.02 1.40 0.60 1.92 1.40 2.21 0.00 2.44 2.55 3.03 0.65 0.00 1.16 0.00 0.82 2.03 1.90 0.98 2.67 2.78 1.54 1.18 1.76 1.71 3.64 1.43 3.80 0.57 0.00 2.90 2.07 3.90 3.57 1.20 3.19 2.65 4.79 0.00 1.47 0.00 1.75 0.00 1.83 4.76 2.60 1.41 2.68 4.03 3.12 2.99 3.39 0.00 2.44 1.46 0.00 K intron_retention E_chr3R_6935653_7037028,nocturnin,RI_chr3R_7026291_7032627,I_chr3R_7029508_7030286 chr3R + chr3R_7033904_7033968 chr3R_7033903_7033904;chr3R_7033968_7033969 chr3R_7033271_7033903;chr3R_7033969_7034349 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 NA NA 0.00 0.00 3.85 0.00 2.38 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG3305,CREI_chr2L_21573959_21574786 chr2L + chr2L_21575114_21575966 chr2L_21575114_21575964 chr2L_21574787_21575113;chr2L_21575967_21576186 99.82 99.38 99.76 99.48 100.00 99.67 100.00 99.82 99.86 100.00 99.66 99.38 99.73 100.00 100.00 99.82 100.00 99.72 99.78 99.74 100.00 100.00 99.72 99.71 99.48 99.68 100.00 100.00 98.85 100.00 99.73 99.34 99.41 99.83 100.00 100.00 100.00 99.60 99.62 100.00 100.00 100.00 100.00 100.00 99.46 99.69 99.68 100.00 99.86 100.00 99.71 100.00 100.00 100.00 99.77 100.00 99.69 99.63 K intron_retention CG31064,RI_chr3R_23056388_23064246,RI_chr3R_23059404_23062725,I_chr3R_23069667_23070365 chr3R - chr3R_23056388_23058194 chr3R_23056387_23056388;chr3R_23058194_23058195 chr3R_23056292_23056387;chr3R_23058195_23058597 0.00 0.00 2.27 3.70 0.00 0.00 0.00 2.99 3.75 0.00 0.00 0.00 0.00 0.00 0.00 5.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.00 3.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG4699 chr3R + chr3R_11624133_11624442 chr3R_11624132_11624133;chr3R_11624442_11624443 chr3R_11623809_11624132;chr3R_11624443_11624758 86.44 83.33 84.62 83.33 70.27 75.76 94.34 89.39 82.35 91.11 89.19 82.61 91.89 84.62 85.71 85.71 89.74 96.15 86.36 87.36 83.33 93.28 86.44 92.00 87.50 88.57 77.42 80.70 77.03 87.10 86.05 92.31 87.10 88.52 85.25 84.09 78.87 80.00 84.85 97.58 91.94 89.89 91.67 88.68 83.95 84.06 84.38 86.57 89.89 75.51 88.46 93.33 80.95 83.33 81.63 88.24 93.33 86.60 K intron_retention CSN5 chr3R + chr3R_12296162_12296214 chr3R_12296161_12296162;chr3R_12296214_12296215 chr3R_12295842_12296161;chr3R_12296215_12296682 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14777,CG14778 chrX + chrX_1361998_1362084 chrX_1361997_1361998;chrX_1362084_1362085 chrX_1361836_1361997;chrX_1362085_1362218 5.48 7.14 6.25 0.00 5.56 6.45 0.00 0.00 8.89 NA 0.00 4.62 0.00 7.69 4.65 NA NA 0.00 12.50 10.94 0.00 21.74 4.00 0.00 0.00 8.33 12.00 NA 0.00 7.14 4.55 0.00 0.00 2.38 0.00 10.34 9.09 0.00 7.84 8.11 0.00 9.52 15.79 11.76 7.69 5.41 7.69 0.00 7.55 3.57 6.25 NA 7.41 3.45 2.94 8.82 12.50 0.00 K alternative_donor lap,I_chr3R_3017854_3019314 chr3R + chr3R_3018693_3019314 chr3R_3018735_3019314 chr3R_3019315_3019410;chr3R_3018443_3018692 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 93.75 100.00 100.00 94.44 95.83 95.45 100.00 100.00 95.83 100.00 100.00 94.12 94.12 100.00 91.67 100.00 100.00 93.33 95.83 94.44 91.67 86.67 90.91 97.14 100.00 100.00 100.00 95.24 100.00 92.31 96.43 90.00 100.00 92.31 100.00 100.00 95.45 100.00 93.75 100.00 N jcn_only_AA CrebA,I_chr3L_15541841_15542648 chr3L + chr3L_15543697_15544191 chr3L_15543697_15543963 chr3L_15543247_15543696;chr3L_15544192_15546314 38.00 32.26 33.33 39.53 NA 51.22 46.15 37.04 37.89 47.83 NA 40.98 54.84 40.00 43.75 40.62 30.77 45.16 33.33 29.00 43.48 54.29 36.92 27.66 41.67 21.74 48.48 42.86 NA NA 63.64 30.00 33.33 30.23 NA 40.00 30.59 32.26 34.48 32.69 NA 39.19 34.48 NA 37.50 40.00 43.33 NA 33.33 42.86 31.25 38.10 31.91 NA NA NA 37.21 40.00 K intron_retention R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8084391_8089393 chr2L_8084390_8084391;chr2L_8089393_8089394 chr2L_8083902_8084390;chr2L_8089394_8089493 100.00 NA NA 100.00 NA NA 100.00 95.00 100.00 NA NA 100.00 100.00 90.00 NA 100.00 NA NA 90.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 NA NA 92.31 NA 100.00 NA NA NA 100.00 NA 100.00 NA 100.00 NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA K alternative_acceptor LanB1,RI_chr2L_7820401_7820448,RI_chr2L_7820405_7820461 chr2L + chr2L_7820401_7820461 chr2L_7820401_7820448 chr2L_7820305_7820400;chr2L_7820462_7820548 0.86 1.01 0.60 1.26 1.02 0.60 0.73 1.37 0.70 0.59 0.89 0.79 1.08 0.84 0.87 1.20 1.15 0.74 1.14 1.10 0.98 0.63 0.65 0.46 1.50 2.16 0.78 0.68 2.04 1.11 0.21 0.73 0.65 0.42 0.64 0.57 0.38 0.78 0.87 0.57 2.04 0.74 0.60 0.73 1.32 1.18 1.15 0.21 0.97 1.03 0.73 0.97 0.65 0.86 1.15 1.08 0.88 0.94 K intron_retention CG9776 chr3R - chr3R_153740_153858 chr3R_153739_153740;chr3R_153858_153859 chr3R_153532_153739;chr3R_153859_154129 10.87 7.55 11.63 58.93 9.09 10.00 28.30 12.36 19.54 16.67 16.67 16.67 12.82 18.18 12.07 22.81 20.00 11.32 14.89 19.12 6.25 4.17 5.61 5.63 9.80 10.87 8.22 7.41 14.58 13.79 13.51 11.76 7.32 17.74 10.26 15.00 7.81 1.82 8.06 7.25 8.70 15.00 23.53 3.12 13.16 7.46 5.88 10.53 15.19 10.53 10.34 9.52 8.33 2.50 11.76 9.09 12.66 10.53 K intron_retention bif,I_chrX_11581793_11583233 chrX + chrX_11581669_11583233 chrX_11581668_11581669;chrX_11583233_11583234 chrX_11581495_11581668;chrX_11583234_11583333 0.00 0.74 0.00 0.32 0.45 0.00 0.64 0.61 0.39 0.63 0.00 0.53 0.97 0.00 0.00 0.00 0.00 3.17 0.95 0.39 1.05 0.00 0.00 0.00 1.03 0.00 0.56 1.34 1.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.23 0.63 0.42 0.53 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.40 0.52 0.00 0.00 0.00 0.00 0.36 0.00 0.00 K intron_retention CG32016,I_chr4_972691_972763,I_chr4_972719_972763,I_chr4_974853_975546,I_chr4_978690_978939 chr4 - chr4_972691_972763 chr4_972690_972691;chr4_972763_972764 chr4_972619_972690;chr4_972764_972863 100.00 NA 100.00 100.00 NA NA 93.75 100.00 94.74 NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 93.75 NA NA 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA NA 93.33 NA NA NA NA NA 100.00 NA 100.00 88.89 NA NA NA 90.00 NA 100.00 90.00 100.00 100.00 NA NA 100.00 NA 100.00 NA K jcn_only_AD pes chr2L - chr2L_7991620_7993840;chr2L_7991620_7994109 chr2L_7991620_7994134 chr2L_7991358_7991619;chr2L_7994135_7994182 0.00 1.26 0.42 0.23 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.37 0.00 0.00 0.44 0.00 0.17 0.00 0.55 0.00 0.60 0.00 0.50 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.24 0.51 0.00 0.00 0.00 0.97 0.00 0.00 1.04 1.01 0.00 0.00 0.00 0.40 0.94 0.00 0.00 K jcn_only_AD Nipped-B,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_616057_617208;chr2R_616057_616283;chr2R_616057_616311 chr2R_616057_616318 chr2R_615957_616056;chr2R_617209_617308 10.26 6.45 7.41 11.36 23.08 7.89 10.26 21.36 13.49 NA 3.57 10.53 21.05 7.81 5.41 11.01 6.90 6.45 12.28 13.33 9.38 11.54 5.71 4.88 10.91 12.50 7.79 13.51 24.44 13.79 3.51 NA 28.00 15.09 9.30 5.77 9.09 9.68 14.71 13.33 NA 8.42 6.06 20.34 NA NA NA 11.43 7.78 NA 15.94 7.69 NA NA 6.45 NA NA NA K alternative_acceptor Nup160 chr2L + chr2L_11124143_11124208 chr2L_11124143_11124195 chr2L_11124040_11124142;chr2L_11124209_11124687 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 97.87 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 NA 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 96.43 100.00 100.00 NA NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA 100.00 K jcn_only_AD noncoding_4199 chr2L - chr2L_21540090_21540149 chr2L_21540090_21540144 chr2L_21539548_21540089;chr2L_21540150_21540275 19.78 19.00 18.44 19.54 23.81 19.87 17.07 19.66 22.19 23.08 18.18 19.78 18.39 20.11 19.12 23.96 20.11 17.81 20.04 17.72 18.67 22.12 29.14 20.60 15.33 20.65 18.93 16.67 22.48 18.71 20.80 19.12 26.03 20.56 20.18 15.84 16.45 21.32 17.82 19.39 22.59 20.86 22.71 17.85 18.35 20.92 21.56 25.66 21.72 20.26 14.00 16.29 17.95 23.70 17.04 19.80 18.72 18.03 K intron_retention CG9281,I_chrX_15603016_15604180 chrX - chrX_15602272_15602346 chrX_15602271_15602272;chrX_15602346_15602347 chrX_15601766_15602271;chrX_15602347_15603015 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.18 0.00 1.16 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG14476,I_chrX_21474758_21476200,I_chrX_21475620_21475965 chrX - chrX_21475620_21476200;chrX_21475620_21476104 chrX_21475620_21476178 chrX_21475520_21475619;chrX_21476201_21476209 4.91 7.41 15.07 11.59 9.86 9.09 7.44 1.75 5.26 0.00 8.62 4.62 3.73 7.87 14.89 10.34 3.45 3.70 2.94 5.26 9.59 2.17 1.37 1.85 5.41 9.09 1.75 3.12 14.29 NA 3.23 NA NA 5.26 3.33 7.14 3.33 5.00 0.00 7.84 NA 6.95 8.45 4.55 NA 3.12 2.86 NA 4.91 3.39 4.41 1.82 7.14 4.35 5.65 3.23 0.00 5.00 K jcn_only_AD CG31038,I_chr3R_25702915_25703648,I_chr3R_25705533_25722419,I_chr3R_25727788_25727905 chr3R + chr3R_25702915_25703648;chr3R_25702989_25703648;chr3R_25702895_25703648;chr3R_25702897_25703648;chr3R_25702838_25703648;chr3R_25702970_25703648 chr3R_25702901_25703648 chr3R_25703649_25703748;chr3R_25702831_25702837 54.55 NA NA NA NA NA NA NA 57.14 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 54.55 NA NA NA NA 42.86 NA NA NA NA NA NA NA NA NA K cassette f-cup,RI_chr3R_9522069_9522165,I_chr3R_9524004_9524059,EI_chr3R_9524613_9524789 chr3R - chr3R_9522069_9522548 chr3R_9522069_9522160;chr3R_9522491_9522548 chr3R_9522161_9522490 chr3R_9521969_9522068;chr3R_9522549_9522949 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.44 NA 0.00 0.00 0.00 0.00 0.00 5.56 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 3.45 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG2641 chr3R + chr3R_3620754_3621314 chr3R_3620942_3621314 chr3R_3621315_3621870;chr3R_3620592_3620753 100.00 100.00 NA 100.00 NA NA 100.00 95.65 100.00 NA NA 100.00 NA 100.00 100.00 96.77 NA 100.00 NA 95.35 NA 90.00 92.31 95.83 NA NA NA NA NA NA 93.75 NA 96.00 100.00 NA NA 100.00 100.00 100.00 90.91 NA 100.00 NA NA NA NA 100.00 NA 100.00 NA 100.00 90.91 100.00 100.00 95.45 NA 100.00 NA K intron_retention MESR3 chr2L + chr2L_18649628_18660208 chr2L_18649627_18649628;chr2L_18660208_18660209 chr2L_18649599_18649627;chr2L_18660209_18661757 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD l(3)82Fd,I_chr3R_1125296_1161435,I_chr3R_1125296_1175189,I_chr3R_1129905_1148709,I_chr3R_1129905_1160126,I_chr3R_1131576_1133656,I_chr3R_1131693_1133665,I_chr3R_1147660_1148709 chr3R - chr3R_1131576_1133665 chr3R_1131576_1133656 chr3R_1131476_1131575;chr3R_1133666_1133756 5.38 NA NA NA NA NA NA 0.00 11.11 NA NA 3.85 NA NA 0.00 6.90 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 11.54 NA NA NA NA NA NA NA 10.34 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention CG14741 chr3R - chr3R_7898759_7898819 chr3R_7898758_7898759;chr3R_7898819_7898820 chr3R_7898482_7898758;chr3R_7898820_7898993 0.57 0.00 0.00 1.49 0.57 0.00 0.00 1.20 1.42 0.00 0.00 1.66 1.27 0.00 1.79 0.00 1.04 2.62 0.00 1.81 0.00 0.96 0.26 0.38 1.01 1.86 2.58 3.88 1.23 0.28 0.00 2.68 1.16 1.90 0.00 0.45 0.00 1.20 1.09 1.67 0.00 0.74 1.26 0.34 0.00 0.00 0.00 0.96 1.46 0.00 0.93 0.00 1.35 0.00 0.90 0.00 0.00 0.43 K intron_retention CG34394,I_chr2L_3365674_3365965 chr2L - chr2L_3368195_3369115 chr2L_3368194_3368195;chr2L_3369115_3369116 chr2L_3368057_3368194;chr2L_3369116_3369138 81.14 NA NA 83.33 NA NA 91.67 78.57 73.33 NA NA 83.33 NA NA 88.89 78.95 NA NA 87.50 75.00 NA 85.71 NA NA NA NA NA NA NA NA 75.00 NA NA 61.54 NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA 91.67 NA NA NA NA NA NA NA NA NA K jcn_only_AD Pino,I_chr2L_1115944_1117443,I_chr2L_1116691_1116908,I_chr2L_1117918_1118565 chr2L - chr2L_1116691_1117443 chr2L_1116691_1116908 chr2L_1116591_1116690;chr2L_1117444_1117516 1.75 0.81 3.09 2.70 4.26 2.06 3.81 2.72 3.64 2.06 0.00 4.52 0.00 2.17 3.64 0.00 1.32 0.00 1.08 1.22 1.02 0.00 2.96 1.45 1.00 2.33 1.53 1.47 7.55 0.94 4.76 0.00 2.47 0.68 3.03 2.22 1.64 1.24 1.74 1.20 2.17 1.36 2.50 0.00 2.25 1.65 1.75 5.88 2.46 2.67 2.42 0.91 2.35 1.85 1.49 2.75 0.77 1.72 K jcn_only_AD CG5514,RI_chr3R_23768206_23768306,Gp93 chr3R + chr3R_23767856_23768309;chr3R_23768206_23768309 chr3R_23767860_23768309 chr3R_23768310_23768406 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 1.45 0.00 0.00 NA 0.00 1.25 0.00 0.00 0.96 0.00 K jcn_only_AD CG14222,I_chrX_19515684_19515800,I_chrX_19515698_19515809,e(y)3 chrX - chrX_19515684_19515809 chrX_19515684_19515800 chrX_19515598_19515683;chrX_19515810_19515900 1.12 0.00 1.16 1.27 2.27 2.82 3.39 3.07 0.55 0.00 0.00 1.47 0.00 1.27 2.20 0.75 1.35 0.00 0.98 0.59 0.00 0.00 1.12 1.12 0.00 2.70 1.23 2.56 0.00 0.00 0.55 0.00 1.69 2.90 0.00 0.00 0.00 0.00 2.20 1.20 2.00 2.04 0.00 4.08 0.00 1.64 1.82 0.00 0.00 0.83 1.43 2.17 1.18 0.00 0.98 1.90 0.47 1.82 K cassette CG13624 chr3R - chr3R_20388665_20408434 chr3R_20388665_20402185;chr3R_20402241_20408434 chr3R_20402186_20402240 chr3R_20386612_20388664;chr3R_20408435_20408562 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 90.91 NA NA NA NA NA NA NA NA NA K intron_retention par-1,EFI_chr2R_15361473_15362032,RI_chr2R_15361473_15362035,I_chr2R_15361473_15366246,I_chr2R_15362147_15365120,F_chr2R_15362147_15365138,I_chr2R_15362147_15365165,RI_chr2R_15363358_15365120,I_chr2R_15363358_15366246,I_chr2R_15365210_15370456 chr2R + chr2R_15361473_15365165 chr2R_15361472_15361473;chr2R_15365165_15365166 chr2R_15361373_15361472;chr2R_15365166_15365209 9.64 6.67 9.52 9.76 0.00 8.00 10.00 4.26 9.30 30.77 NA 8.11 0.00 0.00 0.00 9.09 0.00 0.00 10.00 9.80 0.00 20.00 15.15 8.33 11.76 0.00 12.82 33.33 NA 0.00 0.00 6.67 12.50 9.52 12.00 10.53 25.00 7.14 12.20 8.33 NA 8.93 0.00 11.11 16.67 10.00 12.00 19.05 7.27 11.11 14.29 26.32 13.04 20.00 0.00 8.33 12.50 10.00 K jcn_only_AD CG13602,I_chr3R_19753657_19753715 chr3R - chr3R_19753657_19753715;chr3R_19753657_19753869 chr3R_19753657_19753717 chr3R_19753602_19753656;chr3R_19753870_19754006 81.82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 81.82 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AD I_chrX_1757755_1757801,CG14817,I_chrX_1770939_1771001,RI_chrX_1770945_1771037,RI_chrX_1773382_1773444,trr,I_chrX_1793073_1794406,RI_chrX_1795648_1795745 chrX - chrX_1770945_1771037 chrX_1770945_1771001 chrX_1770845_1770944;chrX_1771038_1771101 99.51 99.49 99.57 99.59 99.54 99.56 99.60 98.87 99.80 100.00 100.00 100.00 98.91 99.40 99.63 100.00 99.43 99.66 99.48 99.49 100.00 100.00 100.00 100.00 98.65 99.59 100.00 100.00 94.42 98.78 100.00 99.28 99.01 98.96 99.49 98.63 98.95 99.74 99.47 98.90 100.00 98.82 100.00 100.00 99.38 99.61 99.40 99.48 99.73 100.00 99.51 99.40 98.80 98.84 98.78 99.32 99.74 98.96 K alternative_donor endos,I_chr3L_14024099_14024488,I_chr3L_14024103_14024158,I_chr3L_14024103_14024546,noncoding_12505,I_chr3L_14024496_14024546 chr3L - chr3L_14024103_14024488;chr3L_14024103_14024546;chr3L_14024103_14024158 chr3L_14024103_14024407 chr3L_14024003_14024102;chr3L_14024547_14024588 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 1.68 0.00 0.00 0.79 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 1.96 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.84 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.65 2.04 0.00 0.00 0.00 0.00 1.04 2.44 0.00 0.00 K intron_retention I_chr3R_1183570_1183645,CG16708 chr3R - chr3R_1187483_1187824 chr3R_1187482_1187483;chr3R_1187824_1187825 chr3R_1185701_1187482;chr3R_1187825_1187884 50.00 NA 50.00 NA NA NA 46.67 61.11 47.06 NA NA 63.16 81.82 50.00 55.56 50.00 69.23 NA 72.73 29.17 NA 25.00 33.33 33.33 30.77 30.77 50.00 NA NA NA 50.00 NA NA 76.92 30.77 NA NA NA NA 33.33 NA 47.06 72.73 NA NA 46.15 41.67 50.00 58.82 35.71 21.05 46.15 NA NA 56.25 NA 81.82 NA K alternative_donor Med,CG1792 chr3R + chr3R_27440353_27440411 chr3R_27440357_27440411 chr3R_27440412_27441478;chr3R_27440226_27440352 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 2.68 0.84 0.00 0.00 0.00 0.00 2.33 1.14 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG34413,RI_chr2R_20769295_20770153,I_chr2R_20771136_20772048,I_chr2R_20773500_20774745 chr2R + chr2R_20769471_20770153;chr2R_20769206_20770153;chr2R_20769295_20770153 chr2R_20769150_20770153 chr2R_20770154_20770253;chr2R_20769141_20769149 89.41 95.24 94.12 91.67 96.51 95.51 84.81 85.90 89.66 91.30 96.61 89.01 92.73 88.06 89.41 81.13 92.59 87.50 90.48 91.00 92.06 48.21 84.21 91.57 83.64 92.75 76.56 80.00 67.31 80.65 91.14 66.67 74.29 90.20 84.62 60.87 91.96 88.33 91.03 89.38 83.33 90.64 94.74 91.67 88.89 86.96 92.59 80.65 91.10 88.89 84.91 94.12 84.62 93.33 96.15 89.19 92.31 83.33 K alternative_donor e(y)3,I_chrX_19530503_19530884,I_chrX_19530503_19531405,I_chrX_19531847_19532222 chrX - chrX_19530503_19531650;chrX_19530503_19530884;chrX_19530503_19531405 chrX_19530503_19532222 chrX_19530403_19530502;chrX_19532223_19532322 7.32 3.45 3.57 7.69 9.80 10.34 1.28 8.42 7.64 17.19 10.53 7.09 1.89 5.36 11.29 7.32 10.20 7.84 6.35 6.20 2.44 5.56 9.91 6.49 13.56 4.00 8.00 15.00 16.07 8.82 10.17 3.57 3.81 11.34 7.69 1.27 5.98 8.64 6.96 9.80 5.26 6.15 15.22 1.32 11.43 12.77 10.00 10.09 7.08 2.27 9.64 5.26 5.00 4.00 7.46 3.03 6.25 1.92 K alternative_acceptor rdgA chrX + chrX_8910362_8911891;chrX_8910362_8911894 chrX_8910362_8911876 chrX_8910158_8910361;chrX_8911895_8912021 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention eRF1,CG5618,I_chr3L_20346714_20347106,I_chr3L_20346738_20347058,I_chr3L_20348230_20348404 chr3L + chr3L_20344622_20344682 chr3L_20344621_20344622;chr3L_20344682_20344683 chr3L_20344424_20344621;chr3L_20344683_20344830 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 1.15 0.00 0.76 2.38 1.00 3.29 5.99 0.00 0.00 0.00 0.00 0.43 0.00 1.16 0.00 0.00 0.00 0.00 2.43 0.32 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.51 0.00 0.00 0.00 0.00 0.63 K alternative_donor kar,I_chr3R_8510245_8510617,I_chr3R_8510258_8513437,I_chr3R_8514177_8514930 chr3R - chr3R_8510245_8510617;chr3R_8510245_8510655 chr3R_8510245_8513437 chr3R_8510234_8510244;chr3R_8513438_8513461 100.00 NA NA 100.00 NA NA 100.00 80.00 75.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 NA 87.50 NA 92.86 88.89 100.00 NA NA NA NA 100.00 NA 80.00 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 NA 66.67 NA NA 100.00 100.00 NA 100.00 100.00 100.00 80.00 NA NA NA NA NA NA 100.00 K cassette dlg1,I_chrX_11298230_11299306 chrX + chrX_11292856_11299306;chrX_11293850_11299306 chrX_11293850_11294820,chrX_11292856_11294820;chrX_11294866_11299306 chrX_11294821_11294865 chrX_11292753_11292855;chrX_11299307_11299406 35.29 30.21 38.74 83.08 42.25 37.36 8.86 37.27 36.46 38.60 12.86 40.00 23.91 44.12 35.71 33.13 62.07 51.81 36.45 52.65 10.58 42.25 29.41 31.25 31.51 64.20 26.62 65.08 17.42 36.59 44.54 26.15 39.13 41.36 41.84 29.52 28.98 33.02 33.09 21.40 34.21 43.32 28.75 42.86 41.94 25.00 35.29 21.05 30.59 14.85 32.65 41.57 16.22 41.86 46.03 28.57 14.89 21.49 K intron_retention gish,RI_chr3R_12118557_12122383 chr3R + chr3R_12118557_12119708 chr3R_12118556_12118557;chr3R_12119708_12119709 chr3R_12118496_12118556;chr3R_12119709_12119737 16.33 22.73 16.67 22.73 21.05 21.05 27.78 16.33 13.51 NA 12.50 16.33 22.73 21.88 16.67 25.00 17.86 22.73 11.76 30.00 10.53 14.29 10.81 23.08 0.00 8.70 12.50 35.71 6.25 15.00 17.86 NA 33.33 19.35 15.38 12.50 21.05 25.00 9.09 6.67 NA 18.18 21.05 19.35 0.00 9.09 NA 21.05 12.50 3.85 9.52 0.00 NA NA 15.15 4.76 12.50 NA K alternative_acceptor Pka-R2,I_chr2R_5911755_5913333,I_chr2R_5911755_5913354,I_chr2R_5911803_5913333 chr2R - chr2R_5911803_5913333;chr2R_5911708_5913333 chr2R_5911755_5913333 chr2R_5913334_5913352;chr2R_5911703_5911707 8.71 9.09 9.09 11.11 20.00 16.67 7.14 15.00 15.15 14.29 7.69 23.08 14.29 16.67 6.67 5.88 8.33 16.67 10.00 11.11 8.33 0.00 0.00 NA NA 0.00 12.50 NA NA 0.00 5.26 NA NA 5.88 0.00 14.29 0.00 NA 0.00 21.43 NA 4.76 9.09 7.69 NA NA NA 30.00 4.35 NA 0.00 14.29 NA NA 0.00 NA NA NA K intron_retention Nmdmc,Rel chr3R - chr3R_4871950_4872245 chr3R_4871949_4871950;chr3R_4872245_4872246 chr3R_4869892_4871949;chr3R_4872246_4873723 0.00 0.00 0.00 1.98 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.00 0.00 0.00 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention jim,I_chr3L_22791582_22791898 chr3L - chr3L_22792291_22792350 chr3L_22792290_22792291;chr3L_22792350_22792351 chr3L_22791902_22792290;chr3L_22792351_22792548 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 NA 1.96 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 5.56 0.00 0.00 NA 0.00 0.00 0.00 3.23 0.00 0.00 1.85 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 3.85 K intron_retention Nurf-38 chr2R - chr2R_20447934_20448375 chr2R_20447933_20447934;chr2R_20448375_20448376 chr2R_20447815_20447933;chr2R_20448376_20448610 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.42 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.00 0.48 0.00 0.00 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Sdc,RI_chr2R_17286086_17286391,I_chr2R_17286089_17286391,I_chr2R_17286819_17367595,I_chr2R_17324594_17367595 chr2R - chr2R_17286089_17286679 chr2R_17286089_17286391 chr2R_17286037_17286088;chr2R_17286680_17286818 10.81 9.80 10.81 19.28 3.70 4.76 20.37 19.05 10.00 17.24 63.89 7.79 38.10 7.32 6.12 11.11 12.82 10.71 10.91 10.09 27.66 12.22 10.14 5.26 11.76 10.00 8.16 13.79 17.24 9.09 6.82 13.33 16.81 16.39 8.93 25.00 15.62 10.00 9.46 17.81 10.42 16.18 8.57 17.57 7.69 8.57 12.12 16.67 10.67 25.00 10.87 12.90 3.92 13.04 10.53 6.25 4.00 4.60 K alternative_donor Chc,RI_chrX_15728405_15729273,I_chrX_15728405_15729401,I_chrX_15728946_15729357 chrX - chrX_15728405_15729260;chrX_15728405_15729370;chrX_15728405_15729357;chrX_15728405_15729319 chrX_15728405_15729476 chrX_15728305_15728404;chrX_15729477_15729501 0.00 2.17 1.52 1.79 0.00 0.00 0.00 0.62 0.63 0.00 0.00 2.31 0.00 1.30 3.33 0.60 3.03 0.00 1.08 0.79 0.00 2.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 2.94 2.22 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 1.61 0.00 2.90 1.41 0.00 0.00 0.00 0.00 3.03 0.62 0.00 2.04 0.00 0.00 0.00 1.33 0.00 0.00 0.00 K intron_retention Pgi chr2R - chr2R_4798620_4798688 chr2R_4798619_4798620;chr2R_4798688_4798689 chr2R_4798405_4798619;chr2R_4798689_4798875 100.00 100.00 100.00 100.00 100.00 100.00 99.21 100.00 100.00 97.30 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.81 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 98.28 98.46 100.00 100.00 100.00 100.00 99.00 100.00 98.28 100.00 98.11 98.63 100.00 100.00 100.00 100.00 100.00 100.00 98.97 98.67 100.00 100.00 100.00 98.82 100.00 100.00 98.59 100.00 100.00 100.00 98.68 K cassette lilli chr2L + chr2L_2890917_2946708 chr2L_2890917_2945029;chr2L_2945793_2946708 chr2L_2945030_2945792 chr2L_2890451_2890916;chr2L_2946709_2947435 34.48 26.32 36.00 39.02 18.75 25.00 50.00 41.86 36.84 29.41 33.33 40.54 33.33 30.00 33.33 35.14 40.00 33.33 36.00 26.42 29.41 53.12 26.67 25.00 21.05 52.94 26.67 55.56 75.00 34.48 33.33 42.86 70.37 42.11 32.00 39.29 31.43 29.41 29.17 35.90 50.00 39.47 50.00 34.62 80.00 33.33 35.71 60.87 35.14 22.22 26.32 26.09 29.41 25.00 36.36 25.00 25.00 42.86 K intron_retention CG10565,I_chr3L_21128610_21128680 chr3L - chr3L_21128610_21128717 chr3L_21128609_21128610;chr3L_21128717_21128718 chr3L_21128510_21128609;chr3L_21128718_21128780 0.00 0.45 0.00 1.09 0.00 0.00 0.00 0.58 0.35 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.63 0.00 0.66 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 N alternative_last_exon sec23,I_chr3R_1474873_1475080,I_chr3R_1477727_1478102 chr3R + chr3R_1477525_1478006;chr3R_1477525_1478102 chr3R_1477525_1477702 chr3R_1478103_1478397 chr3R_1477703_1477793 chr3R_1476976_1477524 2.88 1.73 1.95 2.55 3.92 2.22 1.55 2.28 3.06 3.51 1.46 8.37 11.65 2.42 3.51 0.95 2.61 6.25 2.84 4.50 2.34 9.93 3.10 4.17 5.34 1.92 2.76 3.50 1.69 3.42 1.96 5.22 3.76 2.68 2.78 0.68 2.66 1.70 3.46 0.47 3.85 2.88 3.88 3.61 7.03 3.35 1.78 4.65 2.54 4.87 3.70 4.50 1.95 3.64 2.40 2.61 3.02 1.02 K alternative_donor CG14222,I_chrX_19515684_19515800,I_chrX_19515698_19515809,e(y)3 chrX - chrX_19515684_19515809 chrX_19515684_19515800 chrX_19515598_19515683;chrX_19515810_19515900 0.00 0.00 0.00 0.88 0.00 1.96 1.19 2.56 0.75 0.00 0.00 2.02 2.13 1.72 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.95 0.00 2.86 0.00 1.14 1.27 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 1.27 K alternative_donor CG15609,C_chr2R_12899322_12900789,I_chr2R_12902708_12903184 chr2R - chr2R_12902708_12903184;chr2R_12902708_12903163;chr2R_12902708_12903167 chr2R_12902708_12903198 chr2R_12902608_12902707;chr2R_12903199_12903284 2.63 5.88 0.00 3.12 0.00 5.88 6.67 2.70 2.63 0.00 12.50 0.00 4.55 0.00 6.25 3.12 0.00 0.00 5.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 6.25 4.00 11.11 0.00 2.86 0.00 0.00 8.33 20.00 0.00 3.45 0.00 0.00 0.00 8.70 0.00 0.00 8.33 5.56 2.94 10.00 3.33 0.00 11.11 9.09 4.17 0.00 0.00 0.00 K intron_retention CG3065,mr chr2R + chr2R_19858117_19858175 chr2R_19858116_19858117;chr2R_19858175_19858176 chr2R_19857847_19858116;chr2R_19858176_19858208 16.07 20.51 12.82 27.27 20.69 12.50 23.08 11.11 16.28 23.08 15.38 10.53 17.86 12.50 11.90 14.29 11.43 11.76 14.71 10.11 10.00 25.71 18.06 9.09 29.79 22.22 23.44 35.00 32.61 17.78 14.29 23.08 16.00 20.00 19.35 28.26 18.42 12.70 12.00 15.00 24.49 16.18 13.79 9.43 16.33 19.67 12.28 17.74 7.55 15.62 13.70 14.29 20.83 18.42 10.26 17.46 10.94 16.07 K alternative_donor exba,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1425890_1426009;chr3R_1425890_1426125 chr3R_1425890_1426209 chr3R_1425790_1425889;chr3R_1426210_1426225 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG9426 chr2L - chr2L_13218521_13218784 chr2L_13218520_13218521;chr2L_13218784_13218785 chr2L_13217676_13218520;chr2L_13218785_13218976 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 2.78 2.70 0.00 0.00 7.41 4.76 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 6.45 2.38 0.00 0.00 0.00 0.00 0.00 NA 0.00 5.00 0.00 1.82 K intron_retention CG1161 chr3R + chr3R_1182252_1182321 chr3R_1182251_1182252;chr3R_1182321_1182322 chr3R_1182147_1182251;chr3R_1182322_1182342 100.00 99.49 100.00 100.00 100.00 100.00 100.00 99.57 99.61 100.00 100.00 100.00 100.00 100.00 99.52 100.00 100.00 99.24 100.00 100.00 100.00 100.00 100.00 99.54 100.00 100.00 100.00 100.00 100.00 99.24 100.00 100.00 100.00 100.00 99.13 99.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.55 100.00 98.98 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor PGRP-LC chr3L + chr3L_9333602_9335264 chr3L_9333690_9335264 chr3L_9335265_9336229;chr3L_9333584_9333601 100.00 NA 100.00 92.31 NA 100.00 100.00 100.00 100.00 NA NA 87.50 100.00 NA 100.00 100.00 100.00 100.00 100.00 92.31 NA 100.00 NA 83.33 NA 85.71 NA NA NA NA 87.50 NA NA 100.00 100.00 NA NA NA NA 100.00 NA 100.00 85.71 NA NA NA NA NA 92.86 NA 100.00 NA NA NA 100.00 NA 100.00 NA K intron_retention CG30109,CG30108,I_chr2R_13557316_13557647 chr2R + chr2R_13557138_13557191 chr2R_13557137_13557138;chr2R_13557191_13557192 chr2R_13556976_13557137;chr2R_13557192_13557387 52.54 37.93 53.12 75.68 59.09 46.15 47.73 43.90 53.97 57.69 73.91 45.61 55.17 50.00 52.78 60.53 50.00 45.95 37.04 65.62 57.69 76.47 57.14 56.00 80.95 81.48 70.21 50.00 82.61 61.29 61.54 56.67 47.50 38.78 55.56 68.00 53.49 38.71 52.50 51.11 62.22 52.08 47.62 37.04 44.44 50.00 61.76 53.85 52.54 67.39 48.94 39.47 40.00 48.48 41.38 47.73 49.09 38.10 K intron_retention CG6613 chr2R + chr2R_17992501_17992556 chr2R_17992500_17992501;chr2R_17992556_17992557 chr2R_17992337_17992500;chr2R_17992557_17992564 14.46 5.26 29.17 18.75 14.29 28.57 6.25 25.93 13.79 NA 0.00 13.79 0.00 12.50 6.67 23.08 22.22 7.69 NA 12.50 0.00 18.18 24.32 16.67 7.14 11.76 14.63 19.05 40.00 4.00 19.05 27.78 22.22 17.65 12.50 32.00 14.71 11.11 13.79 12.50 NA 10.53 NA 16.67 0.00 23.53 10.00 14.29 19.23 16.67 13.33 15.38 NA 20.00 18.52 0.00 12.50 15.00 K alternative_acceptor msn,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2563960_2564396 chr3L_2563978_2564396 chr3L_2564397_2564692;chr3L_2563818_2563959 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.85 0.50 0.47 0.48 0.28 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG16936,RI_chr2R_20655101_20655166,I_chr2R_20660319_20660496 chr2R - chr2R_20655101_20655161;chr2R_20655101_20655476;chr2R_20655101_20655166 chr2R_20655101_20655620 chr2R_20655001_20655100;chr2R_20655621_20655665 95.16 92.75 100.00 97.44 100.00 100.00 93.88 95.16 98.50 96.30 100.00 95.54 100.00 97.78 92.00 98.08 96.43 14.29 96.00 93.69 96.00 83.33 94.20 93.00 96.67 95.24 91.30 85.71 81.48 79.31 83.05 91.11 93.55 98.94 91.11 75.00 95.60 98.46 95.89 96.40 94.87 94.89 96.55 89.22 84.34 80.85 90.77 81.13 95.14 96.25 94.25 100.00 98.57 96.08 96.43 94.59 96.67 90.10 K intron_retention I_chrX_1798310_1798525,eIF2B-epsilon chrX - chrX_1814801_1814861 chrX_1814800_1814801;chrX_1814861_1814862 chrX_1814306_1814800;chrX_1814862_1815148 0.00 0.00 0.00 0.00 0.00 0.00 2.61 0.81 1.53 2.50 0.00 2.04 2.13 0.00 2.25 0.00 0.00 0.00 0.00 1.08 1.23 0.00 0.80 0.00 0.00 2.35 4.04 6.90 0.00 0.00 0.00 0.67 0.74 0.00 2.60 0.00 0.00 1.41 0.83 0.00 1.49 1.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 K jcn_only_AD mfas,I_chr3R_7811954_7812017,I_chr3R_7818597_7818853,I_chr3R_7818607_7818853,RI_chr3R_7818607_7818970 chr3R - chr3R_7818575_7818970 chr3R_7818575_7818853 chr3R_7818507_7818574;chr3R_7818971_7818995 15.00 14.13 17.17 9.32 10.59 20.83 23.53 15.96 12.68 7.89 17.14 13.38 8.49 13.04 13.04 16.79 15.18 7.87 14.96 15.72 24.24 1.54 13.89 12.24 21.21 9.90 15.69 15.69 9.38 25.00 15.85 9.76 23.30 18.54 9.38 25.93 3.23 4.44 4.76 7.20 23.08 12.50 15.58 8.06 6.45 21.33 11.11 15.00 16.11 15.00 21.25 5.45 17.24 24.00 11.34 16.00 16.67 19.66 K jcn_only_AA Flo-2 chrX + chrX_14818447_14820768;chrX_14818447_14824779;chrX_14818447_14820798 chrX_14818447_14819678 chrX_14818259_14818446 12.50 15.91 5.97 55.84 2.33 5.88 8.33 18.60 13.48 10.00 6.45 15.69 10.00 2.70 13.85 22.54 20.51 8.11 22.22 18.75 9.76 12.28 10.42 20.00 20.00 1.89 13.79 NA 8.33 19.23 12.50 15.79 24.72 18.42 7.69 8.89 8.33 16.67 14.29 3.39 17.50 14.55 12.50 6.67 13.33 18.64 11.11 24.71 17.53 13.33 8.62 4.55 10.34 10.00 12.33 9.52 14.29 11.54 K alternative_donor RI_chr2R_12912984_12913058,RhoGEF2 chr2R + chr2R_12914834_12916177;chr2R_12914845_12916177;chr2R_12914941_12916177 chr2R_12914849_12916177 chr2R_12916178_12916526;chr2R_12914830_12914833 0.00 NA 0.00 0.00 NA 14.29 0.00 11.11 4.00 NA NA 4.55 0.00 0.00 0.00 4.76 0.00 NA 0.00 NA NA 5.88 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 NA 0.00 0.00 10.00 0.00 NA NA NA 0.00 NA 15.38 0.00 0.00 NA 11.11 NA 0.00 0.00 NA 11.11 NA NA NA 10.00 NA NA 0.00 K intron_retention Pink1,F_chrX_6578108_6578160,F_chrX_6578108_6578165,F_chrX_6578108_6578251,I_chrX_6578115_6578251 chrX + chrX_6578104_6578160 chrX_6578103_6578104;chrX_6578160_6578161 chrX_6578015_6578103;chrX_6578161_6578260 23.88 NA NA 33.33 NA NA NA 28.57 10.53 NA NA NA NA NA 16.67 26.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 26.32 NA 17.65 NA NA NA NA NA NA 21.43 NA NA NA NA NA NA NA NA NA K intron_retention bmm,I_chr3L_14772123_14772190 chr3L - chr3L_14770086_14770205 chr3L_14770085_14770086;chr3L_14770205_14770206 chr3L_14769603_14770085;chr3L_14770206_14770273 8.00 NA NA 3.23 NA NA NA 9.52 17.14 NA NA 0.00 NA 0.00 NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA 14.29 NA NA NA NA NA NA NA 8.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor RpL34a chr3R - chr3R_21884774_21884956 chr3R_21884777_21884956 chr3R_21884957_21884989;chr3R_21884702_21884773 58.84 72.73 58.62 57.41 55.00 66.67 81.25 54.90 48.48 NA 60.00 62.07 71.43 63.64 37.50 52.63 65.22 64.29 60.00 57.89 59.09 50.00 50.00 76.47 53.33 46.88 NA 50.00 36.36 64.71 60.61 64.71 48.94 57.41 63.64 58.33 73.33 63.64 77.78 47.62 47.62 58.70 70.00 43.90 46.67 47.62 61.54 50.00 66.04 66.67 66.67 72.73 37.25 NA 58.97 81.82 48.08 45.28 K alternative_acceptor noncoding_20684,R_chr4_488962_489782,I_chr4_490841_491639 chr4 + chr4_488621_489782 chr4_488621_489415 chr4_488555_488620;chr4_489783_489860 36.93 NA NA 14.29 NA NA 25.00 41.67 30.00 NA NA 57.14 NA 30.00 NA 42.11 NA NA 22.22 41.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA 37.50 40.00 NA NA 22.22 NA NA 42.86 42.86 33.33 NA NA NA NA NA 40.00 33.33 K intron_retention Nipped-B,RI_chr2R_599551_607274,I_chr2R_616057_617208 chr2R - chr2R_616057_616283 chr2R_616056_616057;chr2R_616283_616284 chr2R_615957_616056;chr2R_616284_616309 0.00 NA NA 0.00 NA NA 4.26 3.70 3.23 NA NA 18.18 NA 14.29 NA 5.56 NA NA 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 NA 0.00 NA NA NA 0.00 NA 5.00 NA 6.67 NA NA NA NA 16.67 NA 0.00 NA NA NA NA NA NA NA K alternative_donor Dsp1,I_chrX_16231287_16231413 chrX + chrX_16227752_16228333;chrX_16228273_16228333;chrX_16227677_16228333;chrX_16227797_16228333 chrX_16227804_16228333 chrX_16228334_16228446;chrX_16227667_16227676 10.34 10.34 17.24 7.32 14.29 12.00 4.44 13.56 11.11 5.56 5.56 14.52 13.51 12.12 10.71 8.06 21.43 7.41 9.52 15.28 15.79 7.69 17.65 6.90 9.68 12.50 10.26 6.25 13.04 10.00 12.12 7.14 8.33 3.17 4.76 12.12 10.00 11.76 17.65 8.16 8.33 10.34 13.33 11.43 16.67 5.26 9.52 10.71 14.29 7.41 8.11 11.54 18.75 20.00 5.88 23.81 10.00 6.67 K alternative_donor egl chr2R - chr2R_19632138_19633722 chr2R_19632138_19632620 chr2R_19631860_19632137;chr2R_19633723_19634466 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette bun,I_chr2L_12520177_12536274,I_chr2L_12537393_12537634,RI_chr2L_12540901_12546409 chr2L - chr2L_12477167_12536274 chr2L_12477167_12516483;chr2L_12517186_12536274 chr2L_12516484_12517185 chr2L_12477115_12477166;chr2L_12536275_12536374 22.81 14.89 18.75 17.46 14.58 17.02 28.99 18.06 14.50 34.48 14.04 20.99 19.44 15.56 21.95 19.61 19.51 11.32 14.29 17.21 17.02 56.79 25.30 27.94 26.53 23.08 27.94 76.92 45.83 24.29 23.40 40.00 52.38 19.05 30.77 42.59 19.05 19.44 20.95 34.29 41.94 15.05 24.14 20.73 48.57 25.00 22.81 51.72 17.95 41.67 22.37 23.81 18.75 32.14 16.33 24.00 36.73 43.33 K alternative_donor E(bx),I_chr3L_246324_246699 chr3L - chr3L_246324_246885;chr3L_246324_246438;chr3L_246324_246408;chr3L_246324_246382;chr3L_246324_246388;chr3L_246324_246427 chr3L_246324_246794 chr3L_246224_246323;chr3L_246886_246901 9.60 4.76 4.00 12.82 10.53 12.50 0.00 14.58 7.69 15.38 9.52 7.69 8.82 15.38 7.41 7.55 12.00 9.09 9.68 17.65 4.76 5.26 6.67 6.25 12.50 4.17 8.00 13.33 12.50 5.56 12.50 0.00 0.00 9.43 13.33 16.67 12.00 15.38 12.50 3.70 25.00 6.12 0.00 18.75 NA 25.00 0.00 9.09 6.78 25.00 13.79 7.14 25.00 0.00 10.00 20.00 50.00 16.67 K intron_retention I_chr3R_1303481_1304607,CG31550 chr3R + chr3R_1312900_1313556 chr3R_1312899_1312900;chr3R_1313556_1313557 chr3R_1312810_1312899;chr3R_1313557_1314029 8.33 7.41 15.38 7.14 11.11 0.00 13.64 16.67 12.73 17.65 0.00 19.51 0.00 17.65 12.50 9.09 20.00 11.43 19.05 5.88 17.86 5.13 6.45 15.00 13.33 15.00 14.81 6.90 12.50 7.69 6.90 13.95 4.41 10.00 9.09 7.14 10.81 0.00 0.00 11.11 6.25 8.70 7.14 7.14 6.78 7.81 7.14 7.69 11.11 8.33 5.41 8.33 8.00 0.00 12.20 7.50 8.00 9.09 K alternative_donor PhKgamma,I_chrX_11590179_11590249,I_chrX_11590183_11590435,I_chrX_11596563_11597322 chrX + chrX_11590179_11590435;chrX_11589973_11590435 chrX_11590345_11590435 chrX_11590436_11590535;chrX_11589857_11589972 41.18 25.00 33.33 29.41 25.00 22.22 42.86 29.41 31.03 46.15 60.00 45.45 37.50 33.33 38.46 23.08 22.22 37.50 62.50 44.44 12.50 73.33 31.82 32.14 35.71 63.64 50.00 42.11 58.33 53.33 33.33 42.86 52.17 53.85 46.15 50.00 28.57 27.27 41.18 50.00 61.11 24.24 50.00 63.16 50.00 50.00 16.67 65.52 41.18 19.05 38.10 28.57 33.33 50.00 46.15 30.77 21.43 42.86 K intron_retention CG34422,I_chrX_18743191_18743912 chrX + chrX_18749388_18749451 chrX_18749387_18749388;chrX_18749451_18749452 chrX_18749160_18749387;chrX_18749452_18749892 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.93 8.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Rab14,I_chr2L_14357104_14357340 chr2L + chr2L_14355474_14357340 chr2L_14355473_14355474;chr2L_14357340_14357341 chr2L_14355468_14355473;chr2L_14357341_14357440 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 1.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention gce chrX + chrX_15211516_15211645 chrX_15211515_15211516;chrX_15211645_15211646 chrX_15211376_15211515;chrX_15211646_15212206 4.17 0.00 0.00 5.21 0.00 3.92 16.44 5.49 2.38 3.77 6.67 7.79 12.50 4.44 6.12 3.08 6.45 3.08 4.76 4.41 0.00 8.16 7.41 8.22 3.92 12.00 7.14 4.00 6.86 2.50 4.17 3.23 6.30 2.82 5.26 3.81 2.60 6.12 4.29 2.70 8.64 6.74 0.00 2.27 3.23 4.95 1.92 3.60 7.41 4.84 7.14 0.00 1.85 0.00 3.17 4.84 1.49 3.68 K alternative_donor RhoGDI chr3L + chr3L_19922009_19923914;chr3L_19921875_19923914 chr3L_19921911_19923914 chr3L_19923915_19924114;chr3L_19921868_19921874 5.88 6.00 7.41 2.22 8.70 4.17 2.06 1.47 4.61 9.09 6.67 3.85 7.32 2.99 6.76 6.45 9.84 4.35 6.49 7.22 5.88 6.98 2.33 2.70 7.14 5.26 2.56 0.00 4.35 7.41 6.25 10.00 27.78 7.08 0.00 0.00 7.69 6.45 7.14 10.34 5.26 6.50 5.66 0.00 9.52 2.78 0.00 9.52 5.88 6.67 2.38 5.56 0.00 0.00 5.56 2.50 3.70 7.69 K intron_retention Gprk2 chr3R + chr3R_27279309_27279372 chr3R_27279308_27279309;chr3R_27279372_27279373 chr3R_27279188_27279308;chr3R_27279373_27279978 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention CG5938,EI_chr3R_23100734_23100898,RI_chr3R_23101686_23102014 chr3R + chr3R_23100711_23101112 chr3R_23100710_23100711;chr3R_23101112_23101113 chr3R_23100634_23100710;chr3R_23101113_23101275 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 NA 100.00 100.00 100.00 NA 96.15 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,I_chr2R_15350149_15350210,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350157_15351846 chr2R_15350156_15350157;chr2R_15351846_15351847 chr2R_15350068_15350156;chr2R_15351847_15351914 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 92.86 NA 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA NA NA N jcn_only_AD I_chrX_4000307_4003527,CG4857 chrX + chrX_4011929_4011996;chrX_4011315_4011996;chrX_4011270_4011996 chrX_4011429_4011996 chrX_4011997_4012308;chrX_4011093_4011269 0.00 0.00 0.00 34.78 0.00 0.00 29.55 0.00 23.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30.00 0.00 0.00 NA 0.00 28.95 0.00 0.00 0.00 0.00 0.00 0.00 13.56 8.33 0.00 38.18 0.00 0.00 0.00 0.00 0.00 14.29 18.69 0.00 21.74 36.11 0.00 0.00 0.00 0.00 24.00 26.92 0.00 18.87 0.00 NA 0.00 32.69 0.00 26.67 0.00 K jcn_only_AA F_chr3RHet_1879085_1900358,Alg-2 chr3RHet - chr3RHet_1898928_1898983;chr3RHet_1898930_1898983;chr3RHet_1898895_1898983 chr3RHet_1898919_1898983 chr3RHet_1898984_1899090;chr3RHet_1898558_1898894 0.00 1.32 1.47 0.52 0.00 2.04 0.00 1.46 0.40 0.00 0.00 0.43 0.76 1.44 0.00 0.37 0.00 1.03 0.00 0.78 1.27 3.85 0.00 2.13 1.37 0.88 0.00 4.76 1.49 0.00 0.97 0.00 NA 0.49 0.00 0.00 1.89 0.00 1.10 0.00 2.22 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 K intron_retention DCAP,RI_chr2R_6183553_6192101,I_chr2R_6188094_6192101 chr2R + chr2R_6193476_6193649 chr2R_6193475_6193476;chr2R_6193649_6193650 chr2R_6193243_6193475;chr2R_6193650_6194122 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2814327_2817753 chr2R_2814327_2814894;chr2R_2815657_2816013;chr2R_2816342_2817327;chr2R_2817604_2817753 chr2R_2814895_2815656;chr2R_2816014_2816341;chr2R_2817328_2817603 chr2R_2814227_2814326;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 K alternative_donor CkIIbeta,I_chrX_11686847_11687475,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11687025_11687475;chrX_11686948_11687475;chrX_11687313_11687475 chrX_11686979_11687475 chrX_11687476_11687551;chrX_11686929_11686947 2.33 4.35 4.17 2.33 5.56 4.55 5.56 4.35 6.35 0.00 0.00 0.00 4.17 3.85 7.69 2.04 4.17 4.55 5.56 4.26 0.00 0.00 4.35 6.67 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 2.22 0.00 0.00 6.25 0.00 0.00 0.00 0.00 8.16 3.57 4.55 5.56 0.00 4.76 0.00 5.45 0.00 0.00 0.00 6.25 0.00 5.13 12.50 0.00 2.38 N jcn_only_AD Pxn,I_chr3L_2629527_2629921 chr3L - chr3L_2604280_2607692;chr3L_2604280_2604540 chr3L_2604280_2629140 chr3L_2602428_2604279 0.00 0.00 0.00 5.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon CG7795,F_chr2L_8317763_8317836 chr2L - chr2L_8317355_8317633 chr2L_8317551_8317633 chr2L_8316815_8317354 chr2L_8317482_8317550 chr2L_8317634_8317780 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA 33.33 NA K intron_retention CG30020,I_chr2R_6778098_6778140 chr2R + chr2R_6778765_6778912 chr2R_6778764_6778765;chr2R_6778912_6778913 chr2R_6778492_6778764;chr2R_6778913_6779822 63.64 63.89 54.05 80.00 82.61 48.00 84.44 81.63 69.86 50.00 52.17 69.09 78.95 70.83 73.33 66.67 63.64 80.95 68.97 65.38 60.71 56.52 58.49 69.05 69.70 65.85 65.85 53.57 48.57 43.18 66.67 47.37 26.98 68.42 60.00 67.65 69.39 65.52 56.00 41.89 50.00 60.94 59.09 51.52 26.83 40.00 68.97 27.91 57.81 61.22 72.09 57.69 53.33 73.91 55.26 71.88 67.86 25.49 K intron_retention TBPH,I_chr2R_19748981_19749882,I_chr2R_19748981_19749921,I_chr2R_19748984_19749882,I_chr2R_19748984_19749899 chr2R - chr2R_19748984_19749899 chr2R_19748983_19748984;chr2R_19749899_19749900 chr2R_19748884_19748983;chr2R_19749900_19749968 100.00 100.00 100.00 100.00 100.00 100.00 97.92 98.28 100.00 100.00 100.00 98.04 100.00 100.00 100.00 97.87 100.00 96.97 100.00 100.00 100.00 96.15 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 95.45 96.67 100.00 100.00 100.00 100.00 100.00 100.00 96.97 93.75 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG4266,I_chr2R_17052549_17053657 chr2R - chr2R_17052549_17053063 chr2R_17052548_17052549;chr2R_17053063_17053064 chr2R_17052449_17052548;chr2R_17053064_17053184 0.00 0.00 1.72 2.13 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention daw chr2L + chr2L_2808537_2808979 chr2L_2808536_2808537;chr2L_2808979_2808980 chr2L_2808255_2808536;chr2L_2808980_2810253 22.73 NA NA NA NA NA 22.73 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA 23.08 NA NA 14.29 NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG33936,CG33937,RI_chr3R_5183458_5183705 chr3R + chr3R_5181426_5182086 chr3R_5181425_5181426;chr3R_5182086_5182087 chr3R_5181230_5181425;chr3R_5182087_5183414 90.00 NA NA NA NA NA 90.00 NA 87.50 NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA 100.00 98.08 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG10576,I_chr3L_5758117_5758186 chr3L - chr3L_5758285_5758440 chr3L_5758284_5758285;chr3L_5758440_5758441 chr3L_5758187_5758284;chr3L_5758441_5758669 0.00 0.00 0.00 0.38 0.00 0.00 0.82 0.00 0.00 0.00 0.70 0.27 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.60 1.44 0.59 0.00 2.11 2.11 1.13 0.00 0.56 0.88 0.28 0.00 0.00 0.00 0.93 0.00 0.85 0.54 0.90 0.81 0.00 0.47 0.00 0.00 0.00 0.00 0.49 0.00 1.32 0.00 0.27 0.49 0.00 0.00 0.49 0.47 K intron_retention Actr13E chrX - chrX_15630325_15630379 chrX_15630324_15630325;chrX_15630379_15630380 chrX_15629806_15630324;chrX_15630380_15631109 97.74 98.82 97.70 97.76 96.30 98.80 97.41 97.14 96.71 100.00 98.65 94.24 98.59 98.70 95.05 97.92 95.95 96.00 97.85 96.41 98.57 96.36 99.00 96.63 98.55 98.82 97.73 97.40 98.26 96.67 87.61 98.00 97.74 94.50 96.00 100.00 99.17 95.56 95.71 97.16 99.15 95.76 100.00 98.89 96.18 94.85 97.96 97.83 97.74 98.86 97.87 95.65 96.61 98.53 98.95 98.97 96.90 90.52 K intron_retention betaCop chrX - chrX_18275807_18275896 chrX_18275806_18275807;chrX_18275896_18275897 chrX_18275541_18275806;chrX_18275897_18276002 1.60 1.29 1.52 5.85 1.00 0.84 1.85 1.45 1.66 1.97 1.70 1.02 1.14 2.02 2.56 2.73 2.00 1.62 2.20 1.06 0.00 2.64 2.04 1.05 4.40 1.63 2.73 4.98 8.33 1.43 0.40 1.82 0.64 1.58 2.46 1.26 1.86 1.14 0.90 1.74 1.38 2.26 2.05 0.65 1.59 1.83 1.05 1.98 1.18 1.33 1.60 2.30 1.26 1.68 1.38 1.44 0.90 0.00 K jcn_only_AA maf-S,CG11110 chr2R + chr2R_16528624_16528685;chr2R_16528624_16528670 chr2R_16528624_16528673 chr2R_16528563_16528623;chr2R_16528686_16529179 1.18 1.15 2.70 2.60 1.12 0.92 1.78 2.35 1.69 0.00 0.00 0.00 0.94 1.19 0.93 4.17 2.50 2.44 1.83 0.45 0.00 1.53 0.00 3.12 2.86 0.97 4.05 4.00 0.00 1.18 0.00 1.33 2.07 2.60 2.25 2.82 3.41 0.00 0.87 0.93 0.00 1.68 1.19 1.12 0.70 1.15 1.90 0.77 1.20 1.06 1.14 0.00 1.69 1.37 2.44 0.00 0.91 0.90 K alternative_donor sdk,I_chrX_581050_581605,I_chrX_581108_581660,I_chrX_625220_634459,I_chrX_636395_636562 chrX + chrX_581160_581605;chrX_581043_581605;chrX_580974_581605 chrX_581108_581605 chrX_581606_581705;chrX_580950_580973 75.00 50.00 66.67 77.78 NA 66.67 72.73 75.00 77.78 75.00 NA 63.64 100.00 80.00 100.00 83.33 75.00 NA 66.67 87.50 100.00 60.00 75.00 62.50 33.33 NA 57.14 50.00 71.43 44.44 75.00 NA 90.00 75.00 75.00 66.67 100.00 60.00 62.50 85.71 NA 75.00 100.00 87.50 NA 100.00 75.00 82.35 66.67 NA 66.67 50.00 NA NA 66.67 NA NA 66.67 K mutually_exclusive noncoding_5243,I_chr2R_4553376_4563976,l(2)44DEa,I_chr2R_4553577_4562151,I_chr2R_4553817_4565934,I_chr2R_4554300_4563976,I_chr2R_4559579_4559675,I_chr2R_4565692_4565934 chr2R + chr2R_4553376_4562151,chr2R_4562377_4563976 chr2R_4553376_4554272,chr2R_4554300_4563976 chr2R_4562152_4562376 chr2R_4554273_4554299 chr2R_4553371_4553375;chr2R_4563977_4564076 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.11 NA 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 K intron_retention n-syb,I_chr3L_1637270_1637558,metl chr3L - chr3L_1638855_1638908 chr3L_1638854_1638855;chr3L_1638908_1638909 chr3L_1637903_1638854;chr3L_1638909_1638974 23.33 NA 22.22 4.35 25.00 6.25 20.00 31.82 15.15 NA 21.43 22.58 14.29 NA 30.77 27.78 14.29 0.00 12.50 22.50 7.14 NA 66.67 25.00 NA 50.00 31.58 33.33 34.62 7.69 50.00 3.70 21.43 19.05 44.44 34.78 25.00 NA 42.86 19.44 31.03 23.33 NA 30.00 16.67 19.23 25.00 23.64 20.00 35.29 38.89 25.00 21.05 18.75 26.32 NA 25.00 15.69 K intron_retention AP-1sigma chr3R + chr3R_19785111_19785177 chr3R_19785110_19785111;chr3R_19785177_19785178 chr3R_19785002_19785110;chr3R_19785178_19785315 8.04 10.53 8.05 5.81 7.79 7.35 8.03 7.43 7.11 4.17 0.00 8.87 10.14 10.67 8.04 8.77 10.34 3.70 7.41 8.11 4.60 12.90 8.08 6.60 7.55 3.37 9.71 14.52 9.62 10.34 13.08 5.56 3.61 9.09 7.69 10.87 5.88 8.05 6.36 7.78 11.54 5.45 7.87 9.30 0.00 10.14 10.53 15.38 10.05 15.00 8.00 11.27 4.44 5.45 6.06 8.22 10.11 3.28 K alternative_acceptor CG8786 chr3L - chr3L_19633419_19634164;chr3L_19633702_19634164 chr3L_19634085_19634164 chr3L_19634165_19634318;chr3L_19632984_19633418 30.38 28.57 23.08 36.84 60.00 30.00 53.33 27.27 43.75 33.33 42.86 43.48 30.00 36.36 46.15 42.11 21.43 30.77 41.67 22.86 25.00 33.33 22.22 26.67 50.00 26.67 30.77 54.55 28.57 33.33 23.08 25.00 28.57 27.78 18.18 42.86 20.00 30.00 27.27 31.82 37.50 42.86 18.18 33.33 30.00 30.77 27.27 38.46 16.00 11.11 35.71 37.50 NA 14.29 53.33 40.00 16.67 28.57 K intron_retention ferrochelatase chr3R - chr3R_27636663_27636721 chr3R_27636662_27636663;chr3R_27636721_27636722 chr3R_27636594_27636662;chr3R_27636722_27636835 0.52 0.00 0.62 2.54 0.00 1.80 1.19 0.00 0.33 0.00 0.00 0.67 0.87 0.00 1.90 1.53 0.00 1.34 0.00 1.29 0.00 0.46 0.52 0.91 0.74 0.00 2.13 2.70 1.03 0.00 0.99 0.00 0.00 1.07 0.52 1.36 0.76 0.38 1.63 1.02 0.34 0.00 0.00 0.32 0.00 0.66 0.70 0.00 0.00 0.78 0.29 1.16 0.70 1.38 0.00 1.29 0.00 0.00 K intron_retention drpr,I_chr3L_1720385_1723579 chr3L - chr3L_1716557_1716674 chr3L_1716556_1716557;chr3L_1716674_1716675 chr3L_1715710_1716556;chr3L_1716675_1716707 85.71 88.89 NA 66.67 90.00 NA 84.62 95.45 88.00 NA 41.67 90.48 72.00 83.33 88.89 88.24 83.33 66.67 84.62 73.08 70.00 84.21 92.86 100.00 75.00 NA 66.67 88.89 58.82 85.71 90.00 NA 81.82 81.82 87.50 87.50 76.92 NA 66.67 77.78 NA 80.95 87.50 88.89 NA 82.35 71.43 86.36 95.00 80.00 100.00 NA NA 90.00 90.91 100.00 90.00 91.67 K multi_cassette CG40263,F_chr2RHet_1265687_1293040,F_chr2RHet_1298459_1298703,F_chr2RHet_1298459_1311408,F_chr2RHet_1298885_1299622,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1265687_1324445 chr2RHet_1265687_1292103;chr2RHet_1292187_1293055;chr2RHet_1293175_1293235;chr2RHet_1293394_1324445 chr2RHet_1292104_1292186;chr2RHet_1293056_1293174;chr2RHet_1293236_1293393 chr2RHet_1265587_1265686;chr2RHet_1324446_1324530 51.39 50.00 57.14 41.67 63.64 50.00 40.00 51.43 53.49 50.00 NA 51.22 60.00 66.67 65.00 51.35 75.00 63.64 54.55 85.71 57.14 50.00 46.15 44.44 33.33 45.45 71.43 33.33 30.00 66.67 70.83 50.00 44.44 59.52 40.00 30.00 60.00 55.56 53.85 72.00 16.00 60.53 58.82 56.25 27.27 45.45 50.00 83.33 58.97 25.00 71.43 55.56 22.22 40.00 78.26 43.75 29.41 21.88 K intron_retention dome,I_chrX_19573364_19573474 chrX - chrX_19573364_19575864 chrX_19573363_19573364;chrX_19575864_19575865 chrX_19573264_19573363;chrX_19575865_19577696 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 2.68 0.00 0.00 0.00 0.00 0.00 3.17 3.57 0.00 2.63 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.93 0.00 3.37 4.76 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10465,I_chr2R_1227622_1228066,I_chr2R_1227622_1228228 chr2R - chr2R_1228018_1228066 chr2R_1228017_1228018;chr2R_1228066_1228067 chr2R_1227147_1228017;chr2R_1228067_1228166 0.00 5.56 0.00 9.09 0.00 5.71 4.72 5.79 4.27 NA 0.00 0.00 1.75 3.85 2.78 7.14 2.17 0.00 5.63 2.74 0.00 0.00 7.41 0.00 0.00 6.12 8.89 15.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 2.78 0.00 4.21 0.00 0.00 14.29 2.50 0.00 0.00 6.59 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 6.06 K intron_retention mei-218,mei-217 chrX - chrX_17035795_17036299 chrX_17035794_17035795;chrX_17036299_17036300 chrX_17035727_17035794;chrX_17036300_17036399 9.11 NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA 5.56 NA 0.00 7.69 NA NA NA NA NA 0.00 NA 14.29 NA 0.00 NA NA 6.25 10.53 NA NA 11.76 NA 12.50 NA 10.53 NA NA NA 0.00 23.08 NA NA NA NA NA NA NA NA NA K intron_retention cbs,I_chr2R_9340512_9340593 chr2R + chr2R_9339532_9339826 chr2R_9339531_9339532;chr2R_9339826_9339827 chr2R_9339433_9339531;chr2R_9339827_9340240 28.57 14.29 17.39 30.56 33.33 35.00 15.25 34.09 19.30 38.89 13.64 28.26 48.15 20.59 29.17 24.24 33.33 27.27 34.78 28.57 19.05 33.33 29.03 28.57 40.91 26.09 17.07 57.14 53.85 29.41 26.47 35.29 30.77 21.43 21.05 35.71 22.73 NA 39.13 29.41 35.71 27.66 26.09 23.08 53.33 32.43 27.27 35.29 27.66 27.59 32.26 26.32 NA 15.00 21.43 26.92 37.50 39.13 K jcn_only_AD SPoCk,I_chr3L_22776339_22776519,I_chr3L_22777865_22778359 chr3L + chr3L_22771925_22776519 chr3L_22776339_22776519 chr3L_22776520_22776619;chr3L_22771825_22771924 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.51 1.41 0.00 0.71 0.00 2.13 2.47 1.35 0.00 0.00 1.11 0.00 0.00 0.00 0.00 4.41 2.33 1.85 4.00 3.12 0.00 0.00 1.45 0.00 0.00 0.00 1.89 1.41 0.00 0.00 0.00 1.35 0.00 0.72 1.89 0.00 1.20 0.00 0.00 0.00 0.84 2.08 0.00 3.39 0.00 0.00 1.27 0.00 2.17 0.00 K jcn_only_AD lig,CI_chr2R_3962006_3962916,I_chr2R_3962357_3962977,RI_chr2R_3962875_3962977 chr2R + chr2R_3961577_3962977;chr2R_3962006_3962977 chr2R_3961910_3962977 chr2R_3962978_3963016;chr2R_3961479_3961576 1.95 3.29 1.28 3.26 3.90 2.35 1.51 1.26 3.12 3.92 1.91 3.89 2.73 2.87 2.56 0.79 0.72 1.01 0.95 0.43 3.23 1.90 2.33 2.93 2.71 1.27 5.00 20.11 7.84 2.72 1.00 2.82 0.63 1.95 0.74 3.76 1.82 2.47 1.59 3.11 2.80 1.27 0.97 1.41 2.78 1.14 0.83 2.34 1.43 0.52 1.80 1.05 1.98 1.20 2.13 2.23 1.81 1.27 K intron_retention CG4495,I_chr2L_7183323_7183502 chr2L + chr2L_7182900_7183162 chr2L_7182899_7182900;chr2L_7183162_7183163 chr2L_7182707_7182899;chr2L_7183163_7183322 18.18 15.79 18.75 20.75 18.75 30.00 33.33 18.42 17.07 NA 18.18 20.45 45.45 26.32 28.00 15.38 15.38 26.32 28.00 26.53 33.33 11.54 6.45 17.65 12.50 17.86 18.18 30.00 25.81 7.41 21.43 26.32 20.59 17.50 18.75 22.22 17.24 20.00 29.41 13.33 5.88 12.82 10.53 8.33 15.38 11.54 NA 5.71 24.44 NA 17.39 9.09 14.29 NA 17.86 NA 35.29 9.33 K intron_retention CG12702,I_chrX_19654440_19654520 chrX - chrX_19654000_19654067 chrX_19653999_19654000;chrX_19654067_19654068 chrX_19653765_19653999;chrX_19654068_19654439 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.45 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 NA K alternative_donor Ect4,I_chr3L_8075556_8086158,I_chr3L_8089973_8090123,I_chr3L_8089977_8091445,I_chr3L_8091826_8092243,I_chr3L_8098397_8101385,I_chr3L_8098758_8101738,I_chr3L_8100030_8101385 chr3L + chr3L_8089973_8090070 chr3L_8089977_8090070 chr3L_8090071_8090087;chr3L_8089959_8089972 80.00 77.78 77.78 92.31 NA 75.00 68.75 78.12 76.19 NA 77.78 95.65 NA 82.35 80.00 78.12 78.57 71.43 82.61 83.33 90.91 NA 82.35 NA NA 87.50 NA NA NA NA 58.33 NA NA 80.56 63.64 66.67 NA NA NA 90.91 NA 80.00 92.86 NA NA NA NA 72.73 82.14 NA 86.67 NA NA NA 91.67 NA NA NA K alternative_donor Rab5,I_chr2L_2361586_2364444,RI_chr2L_2361586_2364627,I_chr2L_2361586_2364794 chr2L - chr2L_2361586_2364640;chr2L_2361586_2364480;chr2L_2361586_2364836;chr2L_2361586_2365060;chr2L_2361586_2364302;chr2L_2361586_2364594;chr2L_2361586_2364889 chr2L_2361586_2364312 chr2L_2361486_2361585;chr2L_2365061_2365065 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor psq,RI_chr2R_6449696_6467831 chr2R + chr2R_6500437_6500490 chr2R_6500437_6500484 chr2R_6500242_6500436;chr2R_6500491_6500880 76.92 83.33 75.68 88.89 78.95 76.92 81.48 79.07 78.95 73.08 95.00 74.63 62.50 86.67 76.32 76.32 76.92 77.78 77.42 72.00 94.12 92.86 79.41 72.41 93.75 91.67 83.33 76.47 87.10 64.10 76.92 58.82 71.11 79.63 72.00 95.24 80.49 76.19 65.71 62.12 85.19 75.36 79.17 70.59 52.38 64.71 81.82 64.00 79.03 84.62 75.00 61.90 63.33 71.43 72.73 77.78 64.71 43.40 K alternative_donor RpL10Ab chr3L + chr3L_11816456_11816757;chr3L_11816666_11816757 chr3L_11816530_11816757 chr3L_11816758_11817314;chr3L_11816300_11816455 0.00 0.00 0.02 0.01 0.00 0.02 0.02 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.04 0.04 0.02 0.00 0.00 0.00 0.00 0.02 0.00 0.04 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.02 0.02 0.00 0.01 K multi_cassette Gprk1,R_chr2R_238724_265876,RI_chr2R_354997_358274,RI_chr2R_357455_358274 chr2R - chr2R_315503_358274 chr2R_315503_345527;chr2R_345603_345658;chr2R_345761_345811;chr2R_345886_345945;chr2R_346023_358274 chr2R_345528_345602;chr2R_345659_345760;chr2R_345812_345885;chr2R_345946_346022 chr2R_315493_315502;chr2R_358275_358374 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 95.65 NA 100.00 100.00 100.00 90.00 100.00 96.00 100.00 75.00 100.00 100.00 83.33 100.00 100.00 100.00 100.00 66.67 100.00 NA 60.00 100.00 85.71 100.00 71.43 94.44 100.00 100.00 NA NA NA 87.50 83.33 92.31 100.00 100.00 66.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 N jcn_only_AD CG6293,Bruce chr3R - chr3R_6136241_6136995;chr3R_6136241_6137183 chr3R_6136241_6137129 chr3R_6135621_6136240;chr3R_6137184_6137328 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.15 0.20 0.49 0.58 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.16 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.13 0.00 0.00 0.00 K intron_retention CG31689,I_chr2L_2730373_2736310,I_chr2L_2736431_2737036 chr2L + chr2L_2737568_2737661 chr2L_2737567_2737568;chr2L_2737661_2737662 chr2L_2737422_2737567;chr2L_2737662_2737900 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 1.12 0.00 2.56 3.64 0.00 0.00 0.00 0.00 0.00 0.00 3.33 1.03 0.00 0.00 3.39 7.77 4.76 4.00 1.32 3.33 0.00 4.35 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 1.28 2.47 0.00 2.11 0.00 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 1.11 K jcn_only_AD CG31731,I_chr2L_13786850_13786922 chr2L + chr2L_13786850_13786922 chr2L_13786860_13786922 chr2L_13786923_13787022;chr2L_13786750_13786849 97.87 94.37 98.90 98.62 98.33 98.75 96.72 95.68 97.40 95.12 97.44 98.06 98.55 98.91 97.41 96.27 97.70 96.43 100.00 97.64 97.44 95.08 96.36 100.00 98.63 99.03 97.59 96.97 100.00 98.82 89.92 93.85 96.19 95.60 98.04 98.91 98.04 96.59 96.72 97.83 98.21 98.32 98.65 97.87 100.00 98.06 97.50 99.29 97.27 98.59 99.22 100.00 95.38 100.00 99.09 93.62 100.00 95.00 K jcn_only_AA CG31249 chr3R - chr3R_13512079_13512232 chr3R_13512084_13512232 chr3R_13512233_13512559;chr3R_13511411_13512078 100.00 100.00 100.00 97.67 92.86 96.00 100.00 97.87 100.00 NA 100.00 98.36 100.00 100.00 94.74 100.00 NA 100.00 87.50 100.00 100.00 97.62 100.00 100.00 NA 96.30 96.77 NA NA 95.45 NA 100.00 NA 97.14 NA NA 80.00 100.00 96.00 100.00 100.00 100.00 NA 96.67 96.97 100.00 96.77 NA 95.74 100.00 94.12 NA NA 100.00 100.00 95.83 100.00 90.91 K cassette pum,I_chr3R_4898752_4906279,I_chr3R_4989351_5039481 chr3R - chr3R_4906745_4982839 chr3R_4906745_4924417;chr3R_4924460_4982839 chr3R_4924418_4924459 chr3R_4906280_4906744;chr3R_4982840_4983072 14.84 NA NA 18.75 NA NA NA 14.29 17.39 NA 13.33 16.67 NA NA NA NA 15.38 NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA K intron_retention CG15445,REI_chrX_20988432_20988485,RI_chrX_20988432_20988489,REI_chrX_20988439_20988489,I_chrX_20988439_20988552 chrX + chrX_20988439_20988485 chrX_20988438_20988439;chrX_20988485_20988486 chrX_20988339_20988438;chrX_20988486_20988585 81.08 85.71 82.35 74.29 89.47 83.33 77.78 82.35 84.21 88.89 91.67 78.79 93.75 70.00 82.14 72.73 82.35 77.27 83.33 81.40 93.33 65.00 87.50 65.00 93.75 85.00 90.91 88.89 75.00 73.91 84.62 79.17 80.95 88.57 88.24 89.29 95.00 71.43 86.36 85.71 81.08 84.38 75.00 65.00 71.43 61.76 61.11 74.00 80.00 74.19 57.14 66.67 84.62 69.23 75.00 78.95 68.97 60.78 K intron_retention C1GalTA,I_chr2L_8945896_8950977 chr2L - chr2L_8945123_8945357 chr2L_8945122_8945123;chr2L_8945357_8945358 chr2L_8944233_8945122;chr2L_8945358_8945534 0.00 0.00 0.00 0.85 0.00 0.00 0.35 0.58 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.76 0.00 0.00 0.00 0.47 0.00 0.00 0.00 0.00 0.00 0.00 1.15 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Mlf,noncoding_7111,I_chr2R_11824086_11824186,REI_chr2R_11824089_11824525,CEI_chr2R_11826763_11827279 chr2R - chr2R_11824086_11825951 chr2R_11824085_11824086;chr2R_11825951_11825952 chr2R_11823989_11824085;chr2R_11825952_11826483 9.23 9.09 7.69 27.08 3.33 3.57 5.41 11.94 12.20 2.88 9.26 20.00 9.38 10.91 8.86 20.00 7.55 4.55 7.25 12.61 8.00 32.14 12.88 5.43 8.65 3.23 5.84 6.45 12.21 9.71 6.35 15.00 13.28 10.47 9.33 10.47 6.99 4.95 10.81 14.17 11.11 8.26 6.06 14.29 8.46 11.50 9.23 10.29 13.08 7.27 12.63 5.80 16.33 7.62 7.46 6.38 7.96 11.11 K jcn_only_AA Mnf,RI_chr3L_11108516_11108583,RI_chr3L_11108913_11109028 chr3L - chr3L_11108516_11108583 chr3L_11108519_11108583 chr3L_11108584_11108680;chr3L_11108416_11108515 96.43 96.43 92.31 95.45 NA NA 100.00 95.92 98.39 91.30 NA 100.00 NA NA NA NA NA NA NA 95.73 100.00 95.56 100.00 92.86 90.91 100.00 95.45 90.00 100.00 100.00 86.36 90.91 92.00 96.67 85.00 100.00 100.00 NA 96.67 97.50 NA 96.61 NA NA 96.88 96.97 91.18 95.83 94.64 97.73 97.44 NA 93.75 95.00 NA 100.00 88.46 100.00 K cassette fog,I_chrX_22231114_22238023,I_chrX_22246738_22255641,RE_chrX_22256169_22256990 chrX - chrX_22231114_22255642 chrX_22231114_22246594;chrX_22246738_22255642 chrX_22246595_22246737 chrX_22231014_22231113;chrX_22255643_22255741 97.83 94.44 100.00 97.78 92.86 100.00 96.67 98.08 98.08 100.00 100.00 100.00 95.24 96.43 100.00 97.44 100.00 95.00 96.43 93.94 93.33 100.00 100.00 93.75 85.71 100.00 100.00 100.00 NA 92.86 96.43 100.00 100.00 97.56 100.00 90.91 90.91 92.86 100.00 95.45 100.00 95.35 100.00 100.00 87.50 100.00 100.00 100.00 97.87 100.00 93.75 93.33 100.00 NA 95.83 91.67 NA 92.31 K alternative_donor CG15618,RI_chrX_19759043_19759112 chrX - chrX_19759043_19759117 chrX_19759043_19759112 chrX_19758943_19759042;chrX_19759118_19759212 11.88 12.50 5.00 14.29 15.38 4.55 6.67 10.71 11.63 22.22 7.14 6.06 6.67 14.29 5.26 0.00 17.65 0.00 13.04 18.18 11.76 62.50 16.67 3.45 36.36 13.33 16.67 0.00 43.75 37.50 32.35 0.00 9.09 9.68 10.53 30.00 11.63 16.67 18.92 19.51 30.00 9.09 NA 25.00 10.53 9.09 5.88 17.95 11.11 18.75 12.00 NA 10.00 NA 7.69 16.67 4.76 14.71 K cassette Eph,I_chr4_639690_640239,I_chr4_639690_640473,I_chr4_640410_640485,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_639690_640473 chr4_639690_640262;chr4_640410_640473 chr4_640263_640409 chr4_639590_639689;chr4_640474_640573 100.00 100.00 97.44 100.00 100.00 100.00 100.00 98.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.56 96.88 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 98.57 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 98.39 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Gos28,CG31231 chr3R + chr3R_14489540_14489604 chr3R_14489539_14489540;chr3R_14489604_14489605 chr3R_14489507_14489539;chr3R_14489605_14489789 3.81 5.88 0.00 4.41 1.92 5.41 3.12 2.63 0.00 NA 4.76 2.20 0.00 0.00 0.00 3.77 0.00 0.00 1.67 1.94 4.17 3.51 8.82 3.03 9.52 8.70 28.57 9.09 25.00 6.67 0.00 2.38 0.00 1.41 7.41 5.00 5.56 5.26 4.35 3.85 11.76 5.62 0.00 3.03 1.56 6.06 6.38 7.32 2.13 0.00 3.03 5.88 5.00 10.00 0.00 6.90 5.00 3.03 K intron_retention Tsp42Eo,I_chr2R_2942442_2942578 chr2R + chr2R_2943281_2943341 chr2R_2943280_2943281;chr2R_2943341_2943342 chr2R_2943218_2943280;chr2R_2943342_2943384 71.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 53.33 88.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention kis,RI_chr2L_231035_231947,RI_chr2L_242745_242800,I_chr2L_242926_250756 chr2L - chr2L_217736_217792 chr2L_217735_217736;chr2L_217792_217793 chr2L_216632_217735;chr2L_217793_218885 100.00 100.00 97.67 99.07 100.00 100.00 98.84 99.23 99.27 100.00 100.00 99.00 98.28 97.96 100.00 100.00 98.28 100.00 98.53 98.86 100.00 100.00 98.48 100.00 100.00 100.00 100.00 100.00 98.39 100.00 100.00 100.00 100.00 98.18 100.00 98.11 100.00 100.00 97.44 98.53 100.00 98.96 100.00 98.33 100.00 97.50 100.00 98.00 100.00 100.00 98.15 96.55 100.00 100.00 98.65 100.00 100.00 100.00 K intron_retention Graf,RI_chrX_15652351_15654288,RI_chrX_15652363_15654157,RI_chrX_15652363_15654499,RI_chrX_15654228_15654288 chrX - chrX_15652351_15654157 chrX_15652350_15652351;chrX_15654157_15654158 chrX_15652263_15652350;chrX_15654158_15654174 29.67 NA NA NA NA NA 22.22 NA 33.33 NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA K intron_retention Hairless chr3R + chr3R_16447945_16448305 chr3R_16447944_16447945;chr3R_16448305_16448306 chr3R_16447658_16447944;chr3R_16448306_16449020 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 96.30 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 NA K intron_retention CG5174,F_chr2R_14309059_14311473 chr2R + chr2R_14311757_14311830 chr2R_14311756_14311757;chr2R_14311830_14311831 chr2R_14311632_14311756;chr2R_14311831_14311991 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Ptp10D,CEF_chrX_11516219_11517862,I_chrX_11516225_11516345 chrX + chrX_11516225_11517785;chrX_11516219_11517785;chrX_11516391_11517785 chrX_11516213_11517785 chrX_11517786_11518234;chrX_11516125_11516212 0.00 NA 0.00 0.00 NA 0.00 0.00 6.67 11.11 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention RpS9,E_chr3L_9503090_9504155,E_chr3L_9503259_9504163,I_chr3L_9504402_9504516 chr3L - chr3L_9503259_9503381 chr3L_9503258_9503259;chr3L_9503381_9503382 chr3L_9503159_9503258;chr3L_9503382_9503751 14.13 11.11 19.15 16.22 20.00 21.21 17.39 15.00 14.61 16.67 13.64 18.89 23.40 24.32 23.08 30.95 13.64 8.89 21.21 22.58 19.05 13.33 10.48 10.69 13.33 22.86 11.02 14.63 11.54 10.29 2.73 16.67 20.00 23.44 10.29 7.81 10.71 10.20 10.20 14.13 11.76 19.59 20.00 8.00 7.37 11.11 11.11 13.89 21.19 16.28 8.92 9.59 15.71 7.96 14.81 9.22 12.66 46.43 K alternative_donor CG7530,I_chr3R_10556352_10557136,eff chr3R - chr3R_10556352_10557105;chr3R_10556352_10557130;chr3R_10556352_10557148;chr3R_10556352_10557198 chr3R_10556352_10557126 chr3R_10556252_10556351;chr3R_10557199_10557231 26.47 20.69 30.30 26.47 29.41 20.83 40.74 30.30 27.27 33.33 31.03 22.92 32.14 28.57 35.00 30.77 30.56 30.56 30.77 27.66 31.03 33.33 24.32 30.00 26.32 25.81 34.62 18.75 20.69 21.88 21.62 16.67 26.67 21.43 20.83 46.43 22.86 33.33 29.41 30.38 35.48 28.57 22.58 23.26 25.64 28.79 20.00 23.81 25.61 30.00 25.00 15.00 18.97 21.05 25.00 25.00 21.95 24.51 K alternative_acceptor CG7203,I_chr2L_7795654_7795717,Herp chr2L - chr2L_7798615_7799308 chr2L_7798624_7799308 chr2L_7799309_7799846;chr2L_7798163_7798614 100.00 100.00 100.00 100.00 94.12 100.00 96.77 100.00 98.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 95.83 100.00 96.88 100.00 93.33 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 94.74 100.00 90.91 97.30 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 95.24 93.33 100.00 100.00 95.65 100.00 100.00 100.00 K jcn_only_AA mod(r),I_chrX_515823_515874,RI_chrX_515831_515923,I_chrX_516392_517480 chrX + chrX_515831_515923;chrX_515831_515885 chrX_515831_515874 chrX_515763_515830;chrX_515924_515974 71.68 76.92 68.00 70.27 76.92 62.50 79.17 75.93 69.23 60.00 85.71 71.93 64.71 62.96 80.77 68.75 NA 84.62 68.29 70.97 87.50 65.38 68.63 62.07 60.00 70.00 67.74 80.00 70.37 68.00 74.00 71.43 NA 76.60 NA 66.67 81.63 80.00 79.59 78.57 NA 74.58 76.67 75.61 71.43 62.75 69.77 NA 61.82 88.24 62.90 78.57 72.73 80.00 64.29 73.68 75.86 80.00 K jcn_only_AD CG9153,Myo61F chr3L + chr3L_1314321_1314472 chr3L_1314336_1314472 chr3L_1314473_1314709;chr3L_1314158_1314320 22.54 23.68 14.10 35.63 21.21 13.79 16.18 26.60 19.39 34.21 24.00 23.85 28.81 27.69 30.12 39.19 20.75 21.57 26.76 22.73 16.98 29.79 20.14 17.20 29.82 17.07 26.80 14.63 27.45 14.63 20.69 33.33 17.14 15.69 29.31 37.21 19.31 21.62 31.19 22.02 16.00 26.75 40.43 31.07 17.65 19.61 21.82 11.36 30.00 26.09 20.55 19.30 18.03 23.53 22.54 25.00 22.81 10.94 K intron_retention E_chr4_592469_594231,Ephrin,I_chr4_595055_597604,RI_chr4_596272_596341 chr4 + chr4_592593_594238 chr4_592592_592593;chr4_594238_594239 chr4_592577_592592;chr4_594239_594331 9.09 NA NA 14.63 0.00 0.00 13.21 16.28 12.77 NA NA 12.20 10.53 12.50 0.00 11.54 0.00 NA 13.79 9.09 NA NA 0.00 NA NA NA 11.76 NA NA NA 6.67 NA NA 6.38 15.38 6.67 NA NA NA 0.00 NA 12.50 0.00 NA NA NA NA NA 9.09 NA 0.00 NA NA NA 0.00 NA NA NA K alternative_acceptor Aut1,I_chr3L_18742839_18742896,RI_chr3L_18742839_18742911 chr3L + chr3L_18742839_18742896;chr3L_18742839_18742892 chr3L_18742839_18742911 chr3L_18742770_18742838;chr3L_18742912_18742977 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 2.86 3.33 0.00 0.00 0.00 4.76 15.79 2.70 4.55 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 2.22 0.00 0.00 0.00 0.00 2.08 0.00 3.12 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 4.00 2.38 1.12 K alternative_donor CG3860,I_chr2R_19880382_19880479,I_chr2R_19880401_19880450,RI_chr2R_19882285_19882350 chr2R - chr2R_19880382_19880479 chr2R_19880382_19880450 chr2R_19880314_19880381;chr2R_19880480_19880545 97.78 94.74 100.00 96.43 100.00 100.00 93.33 93.94 97.37 100.00 100.00 100.00 100.00 100.00 95.45 95.65 100.00 100.00 95.00 97.78 93.33 100.00 96.97 100.00 92.86 100.00 95.24 100.00 100.00 94.44 96.15 100.00 100.00 97.14 93.75 100.00 96.88 100.00 96.43 94.59 100.00 96.88 92.86 100.00 94.44 92.31 95.83 95.24 100.00 94.74 96.30 100.00 94.12 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD I_chr2L_11009331_11009442,dUTPase,I_chr2L_11011380_11011453 chr2L + chr2L_11011394_11011471;chr2L_11011419_11011471 chr2L_11011380_11011471 chr2L_11011472_11011553;chr2L_11011335_11011379 98.08 98.25 97.90 97.64 96.08 98.02 99.31 97.47 96.60 98.99 100.00 97.82 98.31 99.12 96.32 98.71 98.02 97.84 100.00 96.88 96.24 98.91 98.26 100.00 100.00 100.00 95.00 98.39 100.00 94.12 99.00 95.59 97.50 98.16 98.08 100.00 98.94 98.55 98.84 95.45 NA 97.45 96.61 100.00 98.08 97.80 98.25 96.55 98.82 97.95 97.73 98.92 93.39 95.79 95.33 98.44 97.29 98.39 K alternative_donor CG8090,I_chr2R_11087088_11087162 chr2R - chr2R_11088433_11088506 chr2R_11088433_11088493 chr2R_11088162_11088432;chr2R_11088507_11088644 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA 100.00 92.86 NA 100.00 NA NA NA 100.00 NA NA NA K mutually_exclusive CG5174,F_chr2R_14309059_14311473 chr2R + chr2R_14311992_14312376,chr2R_14312540_14312844 chr2R_14311992_14312111,chr2R_14312172_14312844 chr2R_14312377_14312539 chr2R_14312112_14312171 chr2R_14311831_14311991;chr2R_14312845_14312913 0.00 0.00 2.86 0.00 0.00 2.67 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.97 2.35 0.00 0.00 0.00 0.00 0.00 2.33 0.00 0.00 1.89 0.00 0.00 0.00 2.15 0.00 0.00 0.00 0.00 6.45 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.90 0.00 0.00 0.00 K intron_retention CG4294 chr2R - chr2R_18488653_18488717 chr2R_18488652_18488653;chr2R_18488717_18488718 chr2R_18488006_18488652;chr2R_18488718_18488869 15.38 11.11 23.81 26.67 30.77 6.67 11.11 13.33 12.50 NA NA 22.22 15.79 NA 22.73 14.29 NA 25.00 29.41 18.60 14.29 21.43 25.00 13.04 23.81 25.00 34.62 41.67 12.50 25.00 15.38 13.04 18.52 17.24 10.53 28.00 0.00 NA 19.35 29.17 5.56 15.00 18.75 15.38 15.38 12.00 20.00 18.18 6.90 0.00 3.85 NA 14.29 0.00 4.55 3.57 18.18 3.03 K intron_retention RpS23,I_chr2R_10103243_10103455,I_chr2R_10103616_10103938 chr2R - chr2R_10103616_10103938 chr2R_10103615_10103616;chr2R_10103938_10103939 chr2R_10103516_10103615;chr2R_10103939_10104038 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 10.53 NA NA 0.00 26.67 NA NA NA 23.08 NA NA 0.00 NA 6.67 K jcn_only_AA CG5044,I_chr3R_11188256_11188309 chr3R + chr3R_11183043_11183114 chr3R_11183043_11183111 chr3R_11182999_11183042;chr3R_11183115_11183180 69.07 69.07 69.05 75.74 70.41 72.12 70.75 69.57 73.47 72.97 71.17 72.33 67.96 66.33 62.39 71.03 70.93 63.41 74.58 66.90 64.71 62.07 67.77 65.48 69.32 70.43 67.42 64.62 60.00 66.07 71.90 67.27 76.00 63.29 74.63 62.35 71.43 69.44 73.95 72.49 53.33 65.89 67.47 71.33 71.19 67.37 67.90 73.85 71.00 68.12 61.90 57.69 58.82 74.63 70.83 69.62 64.62 65.71 K alternative_donor E_chr4_592469_594231,Ephrin,I_chr4_595055_597604,RI_chr4_596272_596341 chr4 + chr4_592646_594238;chr4_592490_594238;chr4_592593_594238;chr4_592469_594238;chr4_592410_594238;chr4_592798_594238 chr4_592737_594238 chr4_594239_594331;chr4_592404_592409 0.00 0.00 0.00 18.18 0.00 0.00 13.64 10.53 4.17 NA 0.00 12.50 0.00 0.00 0.00 4.55 0.00 0.00 0.00 15.38 33.33 0.00 0.00 0.00 0.00 16.67 20.00 NA 0.00 0.00 0.00 NA NA 4.55 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 NA 50.00 10.53 NA 0.00 0.00 NA NA 0.00 NA NA NA K alternative_acceptor CG17385,I_chr2R_10298790_10298843 chr2R - chr2R_10297921_10298229 chr2R_10297924_10298229 chr2R_10298230_10298789;chr2R_10297716_10297920 97.87 96.30 97.92 97.37 92.11 97.67 100.00 98.25 97.85 97.14 97.62 96.55 100.00 97.67 94.00 98.28 97.62 97.87 95.92 99.08 100.00 97.14 98.72 96.88 97.22 98.00 98.31 97.44 97.14 94.59 100.00 97.96 98.15 98.48 100.00 95.00 98.31 95.56 98.67 98.80 97.92 98.88 97.67 98.11 98.39 98.59 97.92 97.87 95.52 90.91 95.65 100.00 97.44 100.00 100.00 95.65 98.78 95.38 K jcn_only_AA CG1140,I_chr3L_1964610_1964836 chr3L + chr3L_1964610_1965074;chr3L_1964610_1965059 chr3L_1964610_1964836 chr3L_1964541_1964609;chr3L_1965075_1965273 2.04 2.00 0.00 0.00 0.00 6.00 0.00 0.00 0.97 4.76 0.00 1.85 3.85 4.08 0.00 1.23 2.56 0.00 2.44 0.62 4.44 40.00 0.00 2.90 0.00 0.00 0.00 4.35 10.00 2.04 1.49 4.55 3.53 4.60 0.00 0.00 0.00 3.57 2.04 5.68 5.00 3.70 2.78 3.70 5.88 2.90 7.84 3.70 3.00 6.45 1.45 0.00 0.00 0.00 4.23 0.00 0.00 1.54 K intron_retention CG13900,I_chr3L_830745_830907 chr3L - chr3L_826886_826945 chr3L_826885_826886;chr3L_826945_826946 chr3L_826781_826885;chr3L_826946_827001 1.73 1.01 2.11 2.48 1.49 0.00 1.71 1.92 2.46 0.00 0.00 2.45 1.72 1.69 3.94 1.77 0.96 0.68 1.40 2.68 1.69 2.42 1.08 0.72 0.36 0.00 4.12 4.57 2.60 1.04 1.10 1.90 2.18 2.66 0.39 1.42 0.00 3.39 0.70 0.67 2.14 2.51 2.65 2.33 3.24 1.62 1.64 2.53 1.73 2.62 1.56 1.09 2.09 1.12 2.58 1.92 1.91 1.93 K intron_retention CG4041,I_chrX_4810463_4810577 chrX - chrX_4810525_4810577 chrX_4810524_4810525;chrX_4810577_4810578 chrX_4810318_4810524;chrX_4810578_4810677 1.06 0.00 0.00 16.28 0.00 3.33 0.00 3.08 2.44 NA 9.09 3.70 0.00 0.00 0.00 0.00 2.78 0.00 0.00 7.27 0.00 12.12 5.13 0.00 5.26 3.23 8.51 5.00 4.17 0.00 13.89 0.00 7.32 0.00 3.23 0.00 7.55 0.00 5.77 0.00 0.00 2.67 0.00 4.76 0.00 0.00 2.50 0.00 0.00 0.00 4.08 0.00 5.88 5.26 2.13 5.00 0.00 0.00 K intron_retention E2f2 chr2L - chr2L_21155366_21155571 chr2L_21155365_21155366;chr2L_21155571_21155572 chr2L_21155107_21155365;chr2L_21155572_21155681 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Nc73EF,F_chr3L_16952838_16955936,CE_chr3L_16952842_16955936,I_chr3L_16952985_16955434,I_chr3L_16953768_16954599 chr3L + chr3L_16953768_16955434 chr3L_16953767_16953768;chr3L_16955434_16955435 chr3L_16953746_16953767;chr3L_16955435_16955513 4.44 8.00 0.00 14.29 0.00 3.23 13.89 9.09 10.53 0.00 11.76 NA NA 7.41 3.85 1.92 0.00 3.85 12.50 6.12 0.00 10.00 0.00 2.94 4.76 8.33 9.76 12.50 0.00 0.00 3.23 NA 0.00 4.44 0.00 NA 11.76 2.38 0.00 9.68 NA 1.72 0.00 7.32 NA 6.06 9.09 0.00 7.25 0.00 6.12 5.26 6.25 15.00 6.67 0.00 0.00 0.00 K cassette CG1622,I_chrX_13191916_13192167,I_chrX_13192409_13192738,EI_chrX_13192857_13192928 chrX + chrX_13191916_13192738 chrX_13191916_13192167;chrX_13192221_13192738 chrX_13192168_13192220 chrX_13191816_13191915;chrX_13192739_13192838 2.15 1.08 1.82 0.66 0.85 1.15 4.20 2.27 1.97 4.21 2.61 3.02 1.20 2.60 1.89 4.03 2.22 6.00 1.06 1.82 1.80 32.50 1.50 2.38 1.40 2.88 1.18 1.45 6.11 2.59 9.38 4.69 2.10 1.27 4.17 4.48 1.59 2.31 1.69 2.22 4.37 2.31 1.32 2.40 1.84 4.29 1.96 7.48 1.55 1.80 2.60 1.98 0.54 2.15 0.81 2.82 1.84 4.65 K intron_retention CG7565 chr3L - chr3L_8081301_8081368 chr3L_8081300_8081301;chr3L_8081368_8081369 chr3L_8080717_8081300;chr3L_8081369_8081536 0.00 NA NA 0.00 NA NA NA 0.00 3.70 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA 9.09 NA 3.45 NA NA 0.00 NA NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 K intron_retention pps,CG17202 chr3R + chr3R_8248593_8248654 chr3R_8248592_8248593;chr3R_8248654_8248655 chr3R_8248389_8248592;chr3R_8248655_8249334 0.00 0.00 0.00 5.48 1.96 0.00 0.00 0.00 3.03 0.00 0.00 2.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 4.65 1.69 0.00 4.55 13.16 11.54 15.15 0.00 1.54 0.00 0.00 0.00 0.00 0.00 1.90 0.00 1.45 2.86 NA 0.93 0.00 0.00 4.44 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 1.67 4.84 1.82 0.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2814327_2817753 chr2R_2814327_2814894;chr2R_2815657_2816013;chr2R_2816342_2816577;chr2R_2816779_2817354;chr2R_2817604_2817753 chr2R_2814895_2815656;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817355_2817603 chr2R_2814227_2814326;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 100.00 100.00 K intron_retention RI_chr3L_5801924_5803389,mad2 chr3L - chr3L_5805962_5806041 chr3L_5805961_5805962;chr3L_5806041_5806042 chr3L_5805815_5805961;chr3L_5806042_5806187 0.00 0.00 0.00 1.41 0.00 0.00 3.85 0.00 0.00 0.00 0.00 1.11 1.92 2.22 0.00 1.92 0.00 0.00 0.00 0.80 0.00 0.00 0.00 4.44 0.00 0.00 5.00 NA NA 0.00 1.56 0.00 4.76 0.00 0.00 0.00 0.00 NA 0.00 2.70 0.00 2.35 0.00 0.00 0.00 2.90 2.00 0.00 0.00 0.00 4.88 0.00 0.00 2.38 0.00 0.00 0.00 0.00 K intron_retention CG13298,RI_chr3L_6186012_6186064 chr3L - chr3L_6185995_6186064 chr3L_6185994_6185995;chr3L_6186064_6186065 chr3L_6185912_6185994;chr3L_6186065_6186164 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 1.50 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 1.48 0.00 0.00 0.00 5.00 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.67 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 1.25 K intron_retention RpS3A,I_chr4_87533_87717,I_chr4_87549_87717,I_chr4_87549_87769 chr4 - chr4_87618_87673 chr4_87617_87618;chr4_87673_87674 chr4_87466_87617;chr4_87674_87863 99.99 100.00 99.98 99.99 100.00 99.98 99.99 100.00 99.99 100.00 100.00 99.99 100.00 99.98 99.98 99.99 99.98 100.00 100.00 100.00 100.00 99.95 100.00 99.94 100.00 99.99 99.95 99.92 100.00 99.94 99.88 100.00 100.00 99.99 100.00 100.00 100.00 99.95 99.94 99.98 99.97 99.99 100.00 100.00 100.00 99.96 99.97 99.98 100.00 99.96 99.97 99.96 99.96 99.88 100.00 100.00 99.97 99.98 K intron_retention Rip11,E_chrX_18532733_18533695,RI_chrX_18530353_18530870,RI_chrX_18530742_18530870,RI_chrX_18544139_18544185 chrX - chrX_18530907_18531445 chrX_18530906_18530907;chrX_18531445_18531446 chrX_18530871_18530906;chrX_18531446_18531606 10.69 10.17 9.39 7.79 8.33 25.00 11.86 10.51 8.11 10.66 21.47 14.32 9.29 11.40 11.70 8.43 9.77 10.47 9.94 11.75 22.60 9.83 11.86 11.00 15.06 15.08 14.98 14.19 11.59 9.60 9.54 10.33 10.14 10.42 12.06 16.67 8.42 12.11 14.36 11.78 10.45 14.89 8.66 8.71 13.97 9.00 12.82 9.21 11.66 8.64 13.98 5.92 14.04 10.98 9.91 11.30 10.69 6.32 K jcn_only_AD nimC1,I_chr2L_13975880_13975977 chr2L - chr2L_13975880_13976476 chr2L_13975880_13975977 chr2L_13975780_13975879;chr2L_13976477_13976753 41.67 34.09 48.48 33.04 33.33 37.74 39.52 39.77 40.22 NA 40.00 42.54 44.93 47.30 43.75 47.00 46.97 46.15 48.00 42.62 40.00 37.50 NA NA NA 34.55 50.00 NA NA 42.31 49.47 50.00 51.61 42.99 NA NA 32.43 NA 20.83 48.48 NA 37.76 44.90 33.33 NA 33.33 45.00 46.43 40.58 NA 41.67 39.47 NA NA 31.00 33.33 37.50 43.48 K intron_retention Rpp30,I_chr2L_258887_271628 chr2L - chr2L_251802_251855 chr2L_251801_251802;chr2L_251855_251856 chr2L_251527_251801;chr2L_251856_251924 0.00 NA NA 0.00 NA NA 7.69 15.79 NA NA NA NA NA NA 16.67 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 14.29 NA 0.00 0.00 NA NA NA NA NA 20.00 NA 13.33 NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 K intron_retention Xpd chr2R + chr2R_17058572_17058625 chr2R_17058571_17058572;chr2R_17058625_17058626 chr2R_17058531_17058571;chr2R_17058626_17059083 0.00 NA 0.00 4.35 0.00 0.00 0.00 2.44 0.00 NA 2.94 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 6.90 NA NA 16.67 0.00 NA NA 22.22 NA 6.06 NA 5.56 2.44 NA 15.00 NA NA 4.76 0.00 NA 3.51 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention CG6498,EI_chr3L_15559245_15561305,I_chr3L_15561224_15561305 chr3L + chr3L_15561200_15561305 chr3L_15561199_15561200;chr3L_15561305_15561306 chr3L_15561183_15561199;chr3L_15561306_15561405 57.27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 37.93 NA NA NA NA NA NA 75.00 54.55 NA NA 35.71 NA NA NA NA NA NA NA NA NA NA 60.00 NA NA NA 90.00 NA NA NA NA NA NA NA NA NA NA K jcn_only_AA key,I_chr2R_20674247_20674291,I_chr2R_20674567_20674813,I_chr2R_20674654_20674897,RI_chr2R_20676692_20676888 chr2R - chr2R_20674228_20674291 chr2R_20674247_20674291 chr2R_20674292_20674391;chr2R_20674147_20674227 0.00 0.00 0.65 0.90 0.00 0.00 0.52 0.40 0.63 1.32 1.36 0.82 0.00 0.00 1.61 0.00 0.83 0.00 0.00 0.00 1.69 0.00 0.00 0.67 0.00 0.70 0.00 0.00 0.00 0.00 2.88 0.00 0.81 0.00 0.00 2.70 0.59 1.38 0.00 2.01 0.00 0.78 0.74 1.42 0.00 0.00 0.00 0.00 0.41 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N cassette CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789616_9789790 chr2L_9789616_9789674;chr2L_9789751_9789790 chr2L_9789675_9789750 chr2L_9789594_9789615;chr2L_9789791_9789832 22.88 22.04 23.04 38.36 21.29 18.54 20.84 24.47 21.75 27.93 17.14 18.33 31.75 23.50 21.40 17.00 25.15 23.16 25.35 18.84 15.15 32.21 10.14 30.27 28.66 11.30 27.65 27.34 11.57 15.15 23.03 18.18 18.22 22.95 20.45 7.35 27.33 25.50 28.44 24.83 16.81 20.85 25.64 24.05 15.58 20.40 27.93 18.18 18.75 27.19 27.36 26.72 15.75 26.19 22.76 23.08 22.88 14.53 K intron_retention Flo-2 chrX + chrX_14733457_14734905 chrX_14733456_14733457;chrX_14734905_14734906 chrX_14733442_14733456;chrX_14734906_14735052 10.53 NA 10.53 0.00 NA NA 25.00 13.04 10.34 NA NA NA NA NA 10.53 22.22 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA NA 10.81 NA NA NA NA NA NA 14.81 NA NA NA NA NA NA NA NA NA K intron_retention dre4,I_chr3L_1875590_1875651,F_chr3L_1877432_1877517 chr3L - chr3L_1873984_1874040 chr3L_1873983_1873984;chr3L_1874040_1874041 chr3L_1873117_1873983;chr3L_1874041_1875214 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA katanin-60 chr3R - chr3R_1056937_1057778 chr3R_1057036_1057778 chr3R_1057779_1057940;chr3R_1056715_1056936 0.00 0.00 0.00 0.00 0.00 4.17 0.00 2.00 0.00 NA 4.55 0.00 NA 5.71 2.56 1.69 0.00 2.17 0.00 1.65 0.00 2.94 0.00 0.00 0.00 15.00 0.00 4.00 4.00 0.00 3.57 NA NA 3.39 0.00 0.00 0.00 3.70 0.00 0.00 NA 1.64 2.78 2.70 0.00 2.56 0.00 0.00 0.00 3.51 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 N alternative_acceptor noncoding_4622,CE_chr2R_2237053_2237111 chr2R - chr2R_2237032_2237090 chr2R_2237036_2237090 chr2R_2237091_2237159;chr2R_2236997_2237031 42.48 40.00 43.90 NA 52.00 45.16 44.44 50.00 41.07 100.00 34.92 53.19 44.44 34.62 36.36 41.18 37.14 35.71 44.74 39.51 51.72 45.45 47.06 40.62 31.25 42.86 33.33 50.00 44.12 40.26 48.39 47.83 45.23 51.06 46.43 43.10 38.33 32.00 43.75 51.43 35.29 35.06 54.84 36.36 25.00 48.00 39.02 45.10 39.06 35.14 45.00 36.00 51.85 42.11 38.64 41.67 37.84 39.39 K alternative_acceptor ced-6,I_chr2R_5328640_5328696 chr2R - chr2R_5325238_5328696 chr2R_5328640_5328696 chr2R_5328697_5328796;chr2R_5324931_5325237 11.50 11.11 10.10 10.34 6.67 11.11 7.87 8.64 9.29 15.22 6.25 11.11 11.50 9.68 6.72 10.34 6.19 7.14 6.93 13.07 7.53 13.95 14.15 12.82 17.74 8.74 16.38 13.24 16.92 11.25 5.88 14.00 13.43 8.33 12.33 14.49 10.96 12.77 15.00 18.97 9.80 9.90 8.54 19.70 17.50 13.25 16.67 20.37 8.96 10.83 12.15 12.50 17.39 12.28 6.98 13.10 11.76 13.56 N intron_retention wun2,I_chr2R_5304606_5304660 chr2R + chr2R_5304841_5304916 chr2R_5304840_5304841;chr2R_5304916_5304917 chr2R_5304772_5304840;chr2R_5304917_5305073 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 71.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA Lnk,RI_chr3R_21714780_21715376 chr3R + chr3R_21716001_21716439 chr3R_21716001_21716424 chr3R_21715377_21716000;chr3R_21716440_21717756 25.53 23.08 22.45 23.19 21.43 22.92 19.48 22.50 30.17 15.38 17.24 19.80 28.81 27.08 27.87 19.05 29.03 40.00 22.95 20.00 23.33 36.67 32.26 29.63 16.67 26.32 28.12 28.57 25.64 23.26 29.41 17.14 16.67 20.24 26.42 26.32 18.42 28.57 26.76 25.56 38.46 23.66 31.58 30.61 6.06 22.58 33.33 22.50 23.16 25.53 18.18 26.19 13.64 30.23 19.40 30.23 32.08 31.03 N jcn_only_AD ATPsyn-Cf6,I_chr3R_19181508_19181563,I_chr3R_19181524_19181702 chr3R - chr3R_19181508_19181584;chr3R_19181508_19181702 chr3R_19181508_19183230 chr3R_19181424_19181507;chr3R_19183231_19184049 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.25 3.63 0.00 0.00 0.00 0.00 0.00 3.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpS19a chrX + chrX_16532337_16532438 chrX_16532336_16532337;chrX_16532438_16532439 chrX_16532320_16532336;chrX_16532439_16532962 0.08 0.06 0.12 0.12 0.13 0.08 0.06 0.09 0.12 0.05 0.10 0.11 0.13 0.16 0.14 0.12 0.13 0.09 0.22 0.10 0.15 0.04 0.07 0.06 0.04 0.00 0.18 0.23 0.05 0.06 0.11 0.08 0.06 0.12 0.08 0.07 0.05 0.04 0.08 0.06 0.14 0.08 0.15 0.05 0.07 0.07 0.08 0.07 0.21 0.08 0.09 0.06 0.09 0.08 0.12 0.07 0.12 0.08 K alternative_last_exon bves chrX + chrX_20947210_20951073 chrX_20947210_20947991 chrX_20951074_20951142 chrX_20947992_20950118 chrX_20947068_20947209 100.00 100.00 100.00 96.77 100.00 93.33 97.14 97.62 98.11 95.00 100.00 96.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.50 93.75 100.00 95.65 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 96.30 100.00 100.00 95.45 100.00 100.00 100.00 97.06 100.00 97.14 100.00 97.37 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 100.00 95.24 96.88 K alternative_donor RpL36,RI_chrX_522912_523358,I_chrX_522932_523360,I_chrX_522949_523360 chrX - chrX_522912_523215;chrX_522912_523414;chrX_522912_523194;chrX_522912_523323;chrX_522912_523389 chrX_522912_523360 chrX_522849_522911;chrX_523415_523436 51.55 46.96 51.30 24.91 44.58 50.00 66.26 31.94 49.05 63.64 43.48 50.48 61.73 52.50 57.30 61.29 58.06 51.32 46.91 44.11 54.55 36.60 79.31 70.18 71.11 69.09 62.39 32.73 62.45 54.95 51.55 30.89 50.54 34.96 54.17 61.46 81.18 74.74 74.47 22.94 49.52 27.63 51.61 29.80 37.75 46.73 66.39 42.91 36.67 64.29 68.04 73.49 44.22 61.06 52.43 61.67 50.67 40.07 K jcn_only_AA CG1599,I_chr2R_5729744_5729805 chr2R - chr2R_5729744_5729805;chr2R_5729673_5729805 chr2R_5729731_5729805 chr2R_5729806_5729905;chr2R_5729644_5729672 0.48 0.00 0.00 1.71 0.00 1.15 4.89 0.52 0.00 2.78 4.23 0.00 0.00 1.06 0.75 0.00 0.00 1.15 0.87 0.51 1.27 2.04 0.00 0.00 0.00 0.83 0.62 2.44 0.00 1.45 0.00 0.00 0.00 0.48 0.00 4.55 0.00 0.00 0.76 0.00 2.22 2.01 1.01 0.00 0.00 2.02 0.84 0.00 0.51 0.00 0.70 2.78 0.00 1.59 0.00 0.00 0.00 0.00 K intron_retention CG1172 chr3R + chr3R_1220450_1221244 chr3R_1220449_1220450;chr3R_1221244_1221245 chr3R_1220200_1220449;chr3R_1221245_1221485 0.00 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention GalNAc-T1 chr2R + chr2R_11399392_11399453 chr2R_11399391_11399392;chr2R_11399453_11399454 chr2R_11399319_11399391;chr2R_11399454_11400270 97.14 96.43 100.00 100.00 100.00 91.67 97.30 97.44 96.15 100.00 100.00 97.67 94.44 100.00 100.00 100.00 100.00 100.00 95.45 97.26 100.00 93.33 93.33 96.88 95.65 100.00 100.00 100.00 100.00 97.14 96.77 84.21 98.31 97.50 96.88 100.00 93.33 92.00 93.94 95.24 100.00 100.00 100.00 100.00 80.95 91.43 94.44 94.74 98.18 95.45 97.22 94.74 95.65 93.33 96.67 96.97 94.74 91.89 K jcn_only_AA simj,I_chr3L_10680263_10680313 chr3L + chr3L_10679362_10680175 chr3L_10679362_10680151 chr3L_10679064_10679361;chr3L_10680176_10680262 6.08 4.85 7.37 2.63 2.94 6.25 3.30 1.79 6.08 5.31 6.90 5.03 2.70 3.03 3.70 6.73 9.80 3.81 2.06 3.63 7.59 15.20 6.90 9.33 11.68 9.76 6.61 6.31 7.91 7.56 3.57 4.85 3.41 6.25 8.39 21.51 4.79 9.15 8.12 5.45 13.71 3.97 1.33 7.21 12.50 5.65 7.03 5.06 5.46 9.92 13.57 5.05 3.03 7.45 5.04 9.42 3.26 2.14 K intron_retention CG9795,I_chr3R_151216_151418 chr3R + chr3R_151212_151418 chr3R_151211_151212;chr3R_151418_151419 chr3R_151116_151211;chr3R_151419_151518 11.27 25.00 6.67 20.00 10.53 17.65 36.36 21.21 14.89 0.00 NA 16.00 NA 14.29 25.00 20.69 6.67 0.00 12.50 6.25 NA 0.00 6.25 21.43 14.29 NA 8.33 NA NA NA 10.00 6.67 NA 14.71 20.00 6.25 0.00 0.00 5.00 22.73 NA 17.65 0.00 12.00 10.53 10.53 8.33 NA 20.00 12.24 0.00 9.09 7.14 NA 15.00 19.05 19.05 0.00 K jcn_only_AD chic,RI_chr2L_5976783_5980950,I_chr2L_5979705_5979818,I_chr2L_5979705_5979941,RI_chr2L_5979705_5979951,I_chr2L_5979705_5979953,I_chr2L_5979705_5980025,I_chr2L_5979705_5980213,I_chr2L_5979705_5980370,I_chr2L_5979705_5980558,I_chr2L_5979705_5980632,I_chr2L_5979705_5980639,RI_chr2L_5979705_5980734 chr2L - chr2L_5979705_5980846;chr2L_5979705_5980950 chr2L_5979705_5980952 chr2L_5979605_5979704;chr2L_5980953_5981025 12.26 15.38 15.92 13.73 15.46 16.78 11.68 15.06 17.00 7.43 15.51 18.04 12.86 18.58 14.81 17.07 8.16 14.47 13.27 15.68 13.21 16.94 10.26 10.05 10.58 10.34 5.56 8.33 10.25 14.94 10.90 12.54 12.20 15.90 12.21 14.13 9.47 9.57 8.63 9.97 12.36 11.49 17.47 8.33 18.52 9.56 10.14 15.06 18.80 10.97 9.86 9.32 7.36 5.88 11.51 7.94 12.26 15.61 K intron_retention Xpac chrX - chrX_3997930_3997994 chrX_3997929_3997930;chrX_3997994_3997995 chrX_3996646_3997929;chrX_3997995_3998337 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 3.85 0.00 14.29 12.50 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 NA 0.00 0.00 0.00 0.00 0.00 K intron_retention MED18,CG14803,CG14805 chrX + chrX_1760529_1760595 chrX_1760528_1760529;chrX_1760595_1760596 chrX_1760242_1760528;chrX_1760596_1760920 1.98 1.98 3.66 2.50 1.47 2.86 3.49 4.44 1.45 0.00 2.35 3.12 3.51 0.00 1.28 0.00 1.75 0.00 0.00 3.23 0.00 0.00 1.48 0.00 4.55 9.68 2.11 1.49 5.77 3.95 8.62 2.22 0.00 3.30 4.00 0.00 1.39 1.77 0.00 3.61 11.54 0.81 4.44 0.00 1.22 3.94 0.00 9.76 2.70 5.61 4.10 1.33 0.00 2.27 2.04 0.81 1.10 1.82 K alternative_donor CG7713 chr3R + chr3R_13620860_13621082 chr3R_13620918_13621082 chr3R_13621083_13621361;chr3R_13620788_13620859 36.36 NA NA NA NA NA NA NA 16.67 NA NA 40.00 NA NA NA 36.36 NA NA NA 18.75 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 36.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K cassette CG33558,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,I_chr2R_2820149_2820628,EI_chr2R_2820947_2821570,CREI_chr2R_2832933_2850384 chr2R - chr2R_2817876_2820628 chr2R_2817876_2819347;chr2R_2820203_2820628 chr2R_2819348_2820202 chr2R_2817851_2817875;chr2R_2820629_2820728 87.74 83.56 92.11 98.41 80.00 66.67 69.57 83.67 87.37 87.72 89.66 92.38 85.00 97.06 87.18 94.44 94.29 85.19 86.49 95.93 90.32 66.18 81.82 89.92 83.08 90.48 83.82 85.71 95.52 89.42 88.89 89.06 94.44 85.71 82.67 96.84 92.81 84.09 90.98 89.36 84.81 85.15 93.10 86.57 87.74 87.97 80.82 91.61 90.24 67.80 82.72 91.49 85.14 79.17 85.11 89.53 87.76 93.07 K intron_retention SF2 chr3R - chr3R_12166485_12166543 chr3R_12166484_12166485;chr3R_12166543_12166544 chr3R_12166401_12166484;chr3R_12166544_12166668 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 K jcn_only_AA CG6116,I_chr2L_13291292_13292541 chr2L + chr2L_13288628_13288716 chr2L_13288628_13288679 chr2L_13288559_13288627;chr2L_13288717_13288781 98.04 100.00 96.43 98.78 100.00 97.44 98.73 97.22 97.87 NA 97.67 98.46 97.22 100.00 97.83 97.50 100.00 97.14 98.04 96.84 97.73 98.28 97.92 100.00 96.77 95.56 100.00 100.00 100.00 100.00 100.00 93.02 98.18 97.01 100.00 92.86 94.29 NA 100.00 98.63 97.14 97.47 100.00 97.37 100.00 100.00 98.08 100.00 100.00 98.11 94.64 96.97 100.00 96.77 98.04 96.30 100.00 96.72 K intron_retention Gp150,I_chr2R_18213233_18213308,I_chr2R_18213383_18213436 chr2R + chr2R_18213233_18213287 chr2R_18213232_18213233;chr2R_18213287_18213288 chr2R_18213133_18213232;chr2R_18213288_18213382 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD I_chr2L_8029734_8029787,Cka,CG7429 chr2L + chr2L_8030840_8032059;chr2L_8031338_8032059;chr2L_8031036_8032059;chr2L_8031309_8032059 chr2L_8031163_8032059 chr2L_8032060_8032641;chr2L_8030749_8030839 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.56 0.64 0.00 0.00 0.00 0.00 0.00 0.91 0.55 0.00 1.08 0.00 0.47 0.76 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.38 0.00 0.65 0.00 0.00 0.55 0.00 0.00 0.00 1.18 0.00 0.98 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor MAN1,I_chr2R_19922148_19922210,I_chr2R_19939693_19939776,I_chr2R_19946657_19946733 chr2R + chr2R_19921944_19922210 chr2R_19921956_19922210 chr2R_19922211_19922310;chr2R_19921802_19921943 78.25 93.75 80.00 80.00 91.67 71.43 66.67 72.22 80.56 NA 56.25 74.29 75.00 62.50 85.00 68.42 83.33 73.33 72.00 78.57 91.67 80.00 66.67 75.00 69.23 85.71 66.67 57.14 84.21 76.47 80.00 91.67 68.57 78.12 73.68 86.36 83.33 66.67 71.43 82.14 66.67 84.62 73.33 84.21 80.00 73.91 72.22 79.41 78.38 68.75 78.57 77.78 90.00 90.00 78.95 81.82 73.91 78.57 K alternative_donor Mob2,RI_chr3L_11520443_11527440,CE_chr3L_11520917_11527526,RE_chr3L_11520925_11527489,RI_chr3L_11535932_11545929 chr3L - chr3L_11520917_11527489 chr3L_11520917_11527440 chr3L_11520825_11520916;chr3L_11527490_11527540 64.29 47.06 80.00 73.33 NA NA 54.84 66.67 60.00 NA 75.00 65.00 63.64 64.29 60.00 70.83 50.00 60.00 47.06 50.00 NA 66.67 46.15 NA NA 55.56 75.00 68.75 85.71 60.00 66.67 NA 75.00 77.78 64.71 80.00 44.44 NA NA 68.42 91.67 56.00 50.00 50.00 NA 66.67 50.00 87.50 63.64 71.43 50.00 NA NA 50.00 66.67 NA 33.33 NA K intron_retention Tak1,I_chrX_20388150_20389255 chrX - chrX_20388150_20389255 chrX_20388149_20388150;chrX_20389255_20389256 chrX_20388050_20388149;chrX_20389256_20389355 86.67 88.89 92.31 66.67 70.00 76.92 85.71 90.48 87.50 95.45 93.33 83.33 76.47 93.75 90.91 94.12 76.92 75.00 75.00 88.89 92.86 70.83 80.00 96.00 94.74 92.86 88.89 88.33 87.04 92.86 85.00 88.00 72.09 68.00 81.82 100.00 56.52 66.67 80.65 92.00 96.67 79.41 90.91 96.43 88.57 82.35 82.05 87.21 86.67 65.71 86.21 85.71 85.71 80.00 71.43 77.27 90.32 90.24 K intron_retention CG7546 chr3L + chr3L_7505017_7505072 chr3L_7505016_7505017;chr3L_7505072_7505073 chr3L_7504805_7505016;chr3L_7505073_7505828 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor l(2)NC136,I_chr2R_1545723_1546024 chr2R - chr2R_1545081_1545147;chr2R_1545003_1545147 chr2R_1545087_1545147 chr2R_1545148_1545722;chr2R_1544877_1545002 95.16 95.12 97.30 97.44 95.12 91.89 97.10 97.44 97.89 94.44 100.00 97.30 100.00 92.31 96.08 95.16 95.65 95.24 95.56 97.59 97.50 93.75 90.57 94.55 94.29 92.00 93.48 80.77 92.59 92.00 98.41 93.55 91.30 97.26 100.00 100.00 98.00 93.94 97.50 96.23 92.59 96.59 100.00 90.48 89.29 92.86 95.35 91.67 96.39 94.55 100.00 94.74 93.55 93.75 96.08 95.12 97.18 90.32 K jcn_only_AA RpS18,CG8908,EI_chr2R_16151918_16151997,I_chr2R_16151918_16152036,I_chr2R_16151938_16152065,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151938_16152065;chr2R_16151938_16152036;chr2R_16151938_16152006 chr2R_16151938_16151997 chr2R_16151852_16151937;chr2R_16152066_16152066 99.97 99.97 99.99 99.98 99.98 99.95 99.97 99.99 99.97 100.00 100.00 99.98 99.98 99.98 99.96 99.93 99.96 99.97 99.97 99.98 100.00 99.90 99.97 99.95 99.96 99.96 99.97 99.62 99.95 99.97 99.95 99.96 99.93 99.97 99.96 99.97 99.99 99.99 99.97 99.93 99.98 99.98 99.98 99.98 99.98 99.99 99.99 99.98 99.98 99.97 99.95 99.98 100.00 99.99 99.97 99.95 99.98 99.96 K jcn_only_AD CG2017 chr3R - chr3R_1686127_1687468;chr3R_1686127_1687891;chr3R_1686127_1688092 chr3R_1686127_1687510 chr3R_1685454_1686126;chr3R_1688093_1688097 13.79 13.85 13.89 9.68 5.17 23.81 10.77 10.75 12.21 17.65 15.22 10.61 16.00 7.02 11.67 15.38 6.12 16.67 13.43 12.95 25.86 24.29 17.65 6.72 14.67 8.75 9.38 6.38 13.79 15.70 13.71 13.89 20.47 17.58 19.10 12.15 11.30 14.78 12.93 16.00 19.44 12.31 11.11 14.52 22.37 19.05 20.69 29.36 11.58 12.84 15.57 6.67 8.00 15.73 5.80 8.04 6.35 25.58 K jcn_only_AD CG34413,RI_chr2R_20769295_20770153,I_chr2R_20771136_20772048,I_chr2R_20773500_20774745 chr2R + chr2R_20769471_20770153;chr2R_20769150_20770153;chr2R_20769206_20770153 chr2R_20769295_20770153 chr2R_20770154_20770253;chr2R_20769141_20769149 2.58 3.33 2.08 0.88 0.81 0.81 1.92 2.80 2.06 0.00 1.25 0.00 0.00 4.35 3.39 5.56 1.82 1.28 0.00 3.60 1.15 0.00 6.02 6.35 6.85 1.08 0.00 7.84 12.50 7.32 2.70 NA 2.50 3.65 0.00 3.85 0.63 3.49 7.96 2.58 NA 2.59 4.88 3.08 7.89 6.45 10.00 4.88 1.03 3.12 1.33 0.00 0.00 4.00 0.00 2.08 3.57 NA K alternative_donor CG17082,I_chr2R_632143_635290,R_chr2R_642176_644740,I_chr2R_644094_644145,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_632400_636726 chr2R_632445_636726 chr2R_636727_636891;chr2R_632352_632399 15.38 NA NA NA NA NA 15.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K jcn_only_AA CG15715,RI_chr3L_15829349_15830356,I_chr3L_15830026_15830356,RI_chr3L_15830030_15830191,RI_chr3L_15830229_15830356 chr3L - chr3L_15830026_15830356;chr3L_15830030_15830356 chr3L_15830229_15830356 chr3L_15830357_15830456;chr3L_15830007_15830025 1.92 0.00 2.22 7.44 2.56 1.85 6.98 0.86 1.69 2.63 0.00 2.10 7.84 1.43 4.12 1.55 1.79 14.29 2.44 2.22 2.22 3.70 2.83 1.92 1.64 6.06 1.08 1.85 7.89 0.00 0.00 0.00 2.33 0.73 0.00 0.00 1.75 2.47 4.23 4.40 1.96 0.00 3.03 3.08 5.56 3.92 1.59 0.00 3.66 1.30 1.08 1.89 4.94 4.65 0.00 1.92 1.71 1.02 K intron_retention obst-A,I_chrX_20112293_20112375,I_chrX_20112340_20112587,RI_chrX_20112439_20112684 chrX + chrX_20112340_20112684 chrX_20112339_20112340;chrX_20112684_20112685 chrX_20112339_20112339;chrX_20112685_20112687 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 14.29 NA 0.00 NA NA NA NA NA NA 4.55 NA NA NA NA NA 0.00 NA NA 0.00 K alternative_acceptor MB8.chr3R.pasa.66,ref1,RI_chr3R_2904130_2904237,RI_chr3R_2904305_2904543,I_chr3R_2904452_2904543 chr3R - chr3R_2904305_2904543;chr3R_2904452_2904543 chr3R_2904130_2904543 chr3R_2904544_2904643;chr3R_2904030_2904129 96.63 96.63 96.97 90.28 97.20 97.30 96.12 94.70 95.33 97.50 94.12 94.76 90.00 97.80 96.84 88.31 98.00 97.22 92.86 97.13 98.28 89.88 96.41 98.15 97.19 93.51 94.40 91.89 97.03 94.92 96.09 96.72 96.19 94.70 96.45 95.81 98.52 98.07 97.69 95.28 95.65 96.18 95.06 97.04 98.46 96.83 96.94 95.77 96.62 94.95 94.29 96.72 98.79 97.87 97.30 97.56 98.36 97.87 K jcn_only_AD RI_chr3R_7061265_7061322,CG31441,CG31388 chr3R + chr3R_7062211_7062271;chr3R_7062207_7062271 chr3R_7062215_7062271 chr3R_7062272_7063062;chr3R_7062165_7062206 0.00 NA NA 0.00 NA NA 0.00 0.00 5.77 NA NA 0.00 NA NA NA 0.00 NA NA NA 3.03 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA 4.76 NA 7.69 NA K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2816013 chr2R_2813804_2813977;chr2R_2814097_2814174;chr2R_2814327_2814894;chr2R_2815657_2816013 chr2R_2813978_2814096;chr2R_2814175_2814326;chr2R_2814895_2815656 chr2R_2813704_2813803;chr2R_2816014_2816113 83.33 60.00 100.00 55.56 66.67 100.00 100.00 66.67 100.00 100.00 66.67 100.00 50.00 100.00 80.00 100.00 100.00 100.00 66.67 87.50 66.67 83.33 81.82 100.00 75.00 66.67 83.33 66.67 75.00 83.33 100.00 100.00 66.67 83.33 100.00 66.67 87.50 83.33 66.67 83.33 80.00 100.00 100.00 75.00 70.00 85.71 57.14 80.00 85.71 100.00 83.33 60.00 100.00 85.71 75.00 88.89 100.00 83.33 K intron_retention CG17834 chr2L + chr2L_8536080_8536206 chr2L_8536079_8536080;chr2L_8536206_8536207 chr2L_8535918_8536079;chr2L_8536207_8536268 0.00 NA NA 0.00 NA NA 20.00 0.00 0.00 0.00 NA 9.68 NA NA 5.56 0.00 0.00 NA 0.00 5.13 NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA 0.00 K intron_retention CG8578 chrX + chrX_15740601_15740989 chrX_15740600_15740601;chrX_15740989_15740990 chrX_15740442_15740600;chrX_15740990_15741031 5.71 2.33 2.56 8.51 0.00 2.94 15.09 4.35 10.26 6.25 4.00 6.94 18.52 7.69 6.52 8.47 5.26 2.27 6.82 7.69 2.50 3.39 4.48 5.56 15.38 8.51 11.63 0.00 14.29 2.86 8.33 10.42 5.77 7.35 0.00 9.09 3.03 4.44 5.71 11.67 4.62 5.43 5.88 2.74 3.12 3.61 5.26 4.11 7.69 5.26 6.52 5.71 0.00 0.00 8.51 6.06 4.00 9.41 K jcn_only_AD HSPC300,I_chr2R_19915648_19915744,I_chr2R_19915648_19915903,I_chr2R_19915648_19916060 chr2R - chr2R_19915648_19915744;chr2R_19915648_19915903 chr2R_19915648_19916136 chr2R_19915548_19915647;chr2R_19916137_19916160 97.71 97.32 99.50 98.26 100.00 98.28 100.00 96.47 96.93 97.03 91.67 96.06 99.25 95.83 97.87 95.52 96.72 97.95 96.47 98.53 95.74 98.57 98.29 96.88 96.30 97.37 98.67 100.00 98.62 96.88 100.00 99.25 99.35 97.51 98.28 99.11 96.00 97.96 97.56 98.50 99.57 97.12 98.28 98.99 96.79 98.31 96.60 97.62 96.41 94.29 95.20 98.21 98.41 95.24 99.09 96.48 97.00 97.71 K alternative_acceptor Nmnat chr3R + chr3R_20772018_20772197;chr3R_20772018_20772605 chr3R_20772018_20772675 chr3R_20771916_20772017;chr3R_20772676_20772744 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 3.85 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 2.63 K alternative_donor CG12404,I_chr2L_12994238_12995342,I_chr2L_12995561_12997461 chr2L - chr2L_12994238_12997461 chr2L_12994238_12995342 chr2L_12994138_12994237;chr2L_12997462_12997561 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG2064 chr2R + chr2R_3553522_3553627;chr2R_3553522_3553619 chr2R_3553522_3553650 chr2R_3553444_3553521;chr2R_3553651_3553914 99.03 100.00 99.40 98.68 98.63 100.00 98.13 99.63 98.70 98.82 100.00 99.09 100.00 99.24 99.38 99.19 98.88 98.32 100.00 99.18 100.00 97.55 98.77 99.21 97.04 100.00 98.43 97.77 96.84 98.65 98.33 98.69 99.32 99.61 98.81 98.09 97.35 98.85 99.03 98.65 97.09 99.66 100.00 98.17 96.89 98.80 99.00 96.88 99.67 98.67 99.64 100.00 100.00 99.41 100.00 99.10 99.07 99.44 K intron_retention lt,I_chr2L_22817840_22817968,RI_chr2L_22820498_22823377,I_chr2L_22831575_22832085,I_chr2L_22832038_22832092,RI_chr2L_22832567_22832623 chr2L + chr2L_22817840_22817891 chr2L_22817839_22817840;chr2L_22817891_22817892 chr2L_22817740_22817839;chr2L_22817892_22817982 30.91 43.40 30.91 53.06 32.26 28.57 47.33 45.08 41.04 34.62 36.11 37.38 32.22 42.62 38.89 31.30 37.10 41.67 38.67 33.72 50.00 17.50 35.94 27.12 40.43 35.56 30.43 43.33 29.41 17.65 30.14 27.27 19.44 33.04 21.43 15.00 22.22 25.49 27.03 18.42 21.43 44.76 30.51 16.67 33.33 29.27 21.88 15.52 33.64 19.57 24.21 29.79 16.00 32.00 37.10 21.43 29.03 12.90 K jcn_only_AA tan,R_chr3L_6048520_6048578,R_chr3L_6048608_6048676 chr3L + chr3L_6048764_6048859 chr3L_6048764_6048816 chr3L_6048696_6048763;chr3L_6048860_6048925 97.56 87.50 92.59 96.72 95.65 NA 96.15 97.56 100.00 NA 100.00 93.33 100.00 96.30 97.14 98.08 100.00 100.00 100.00 94.74 96.15 NA 95.56 100.00 96.30 95.24 100.00 100.00 NA NA 96.55 NA NA 97.62 NA NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 96.67 NA 86.96 100.00 100.00 93.62 NA 97.56 95.45 NA 100.00 89.19 NA 96.00 86.96 K alternative_acceptor Rbp2,I_chrX_16342886_16343906,I_chrX_16343528_16343906 chrX + chrX_16342763_16343909 chrX_16342763_16343906 chrX_16342757_16342762;chrX_16343910_16344006 98.77 100.00 100.00 98.90 98.00 100.00 98.51 99.07 96.55 100.00 97.06 97.27 100.00 97.96 100.00 98.88 100.00 97.44 98.11 99.39 97.78 98.51 100.00 100.00 90.00 97.92 100.00 96.67 97.06 98.77 97.96 98.44 98.51 99.21 100.00 97.50 100.00 100.00 93.33 100.00 97.56 99.38 97.56 97.30 98.82 96.55 100.00 99.16 97.44 NA 94.44 100.00 95.45 NA 98.67 100.00 100.00 99.11 K intron_retention mav,RI_chr4_645290_646129 chr4 - chr4_645563_646134 chr4_645562_645563;chr4_646134_646135 chr4_645398_645562;chr4_646135_646229 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 100.00 100.00 100.00 K alternative_last_exon Pif1A,I_chr3R_4624232_4625183 chr3R - chr3R_4619090_4622426 chr3R_4619814_4622426 chr3R_4618781_4619089 chr3R_4619700_4619813 chr3R_4622427_4622658 3.79 0.00 6.00 1.92 0.00 8.33 2.13 1.54 4.94 NA 7.69 3.51 0.00 3.57 5.71 5.36 5.88 0.00 4.26 5.41 6.67 7.25 5.88 5.71 4.35 0.00 0.00 12.50 8.00 2.00 5.88 4.17 2.17 3.33 0.00 2.63 5.13 4.00 3.57 6.06 3.12 2.90 3.57 2.86 0.00 0.00 8.70 6.90 3.03 0.00 8.16 9.52 7.14 5.26 5.00 2.70 2.94 1.82 K intron_retention CG5245,Pros25 chr3R + chr3R_8257204_8257305 chr3R_8257203_8257204;chr3R_8257305_8257306 chr3R_8257046_8257203;chr3R_8257306_8257382 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.48 0.71 0.00 0.00 0.00 1.39 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.37 0.00 0.27 0.00 0.00 0.56 0.24 0.46 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.32 K intron_retention Atu chr3R + chr3R_1438478_1439149 chr3R_1438477_1438478;chr3R_1439149_1439150 chr3R_1438380_1438477;chr3R_1439150_1439211 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.72 100.00 100.00 98.59 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.61 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 98.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.14 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD Rfx,I_chr3R_6198928_6200931 chr3R - chr3R_6191850_6197870 chr3R_6191850_6192404 chr3R_6191771_6191849 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 2.04 NA NA 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA NA 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA K jcn_only_AA gw,I_chr4_672810_672930,I_chr4_679135_681671 chr4 - chr4_671657_672930 chr4_672810_672930 chr4_672931_673030;chr4_670618_671656 0.61 0.00 1.40 0.00 0.85 0.00 0.00 0.29 0.98 0.00 2.40 1.09 0.72 1.90 0.64 0.99 0.00 2.90 0.00 1.10 0.75 2.68 0.56 0.00 0.81 0.57 0.59 0.00 3.80 0.70 0.00 0.89 1.16 0.34 0.00 0.45 0.00 1.01 0.55 0.47 1.94 0.31 0.00 0.59 4.80 1.07 0.00 0.61 0.00 0.71 1.10 0.84 0.00 0.95 0.95 1.27 0.00 0.00 K intron_retention CG30122,I_chr2R_14526123_14526189 chr2R - chr2R_14520869_14520930 chr2R_14520868_14520869;chr2R_14520930_14520931 chr2R_14520697_14520868;chr2R_14520931_14521790 0.31 0.40 1.34 0.00 0.00 0.00 0.00 0.00 0.23 1.44 1.05 1.15 0.63 0.00 0.47 0.00 0.00 0.00 0.00 0.62 0.00 1.72 0.51 0.29 1.28 0.51 0.43 2.78 1.56 0.00 0.00 0.87 0.19 0.66 0.44 0.40 0.86 0.00 0.49 0.59 0.00 0.41 0.00 0.00 0.00 0.32 0.31 0.00 0.78 0.00 0.62 0.00 0.00 0.00 0.00 0.35 0.00 0.57 K intron_retention Fmr1,I_chr3R_5930712_5930781,I_chr3R_5934794_5935245,I_chr3R_5934801_5935537 chr3R - chr3R_5930733_5930790 chr3R_5930732_5930733;chr3R_5930790_5930791 chr3R_5930601_5930732;chr3R_5930791_5930881 1.98 1.46 0.00 1.67 1.45 1.83 0.95 2.49 1.55 1.87 0.60 2.88 0.79 2.40 2.48 1.70 1.55 0.00 2.53 2.27 0.63 1.16 2.94 1.37 2.80 1.85 7.87 3.10 3.79 2.20 1.05 6.76 2.51 1.80 1.98 5.70 3.37 0.78 1.51 2.93 3.57 0.66 1.68 2.94 1.83 3.81 0.00 3.21 2.28 3.74 2.89 2.15 4.00 0.00 0.00 5.56 0.00 2.76 K alternative_donor CG11880,I_chr3R_24949827_24951052,CE_chr3R_24962426_24962797 chr3R + chr3R_24949202_24949522;chr3R_24949222_24949522 chr3R_24949212_24949522 chr3R_24949523_24949826;chr3R_24949179_24949201 13.36 19.35 15.56 14.29 9.09 14.29 11.34 11.11 10.14 15.00 12.20 14.56 14.29 11.54 12.50 11.90 11.67 10.71 7.32 18.18 17.95 7.41 13.04 16.67 13.04 14.55 25.00 3.33 12.50 25.00 15.00 10.00 7.14 11.11 14.29 9.09 8.57 NA 14.81 16.67 15.00 8.77 10.71 16.67 14.29 8.82 18.52 8.00 13.68 20.00 10.00 23.81 6.67 12.50 16.13 22.22 22.22 16.67 K intron_retention CG12024,REI_chr3L_1857404_1857509 chr3L + chr3L_1857404_1857512 chr3L_1857403_1857404;chr3L_1857512_1857513 chr3L_1857304_1857403;chr3L_1857513_1857609 21.13 22.22 21.05 12.00 21.05 0.00 20.00 31.25 27.27 14.81 29.41 15.79 40.00 NA 28.00 NA NA 15.00 25.00 24.39 30.00 34.48 11.63 10.81 15.38 13.33 21.88 19.51 30.00 12.50 20.00 11.11 17.02 27.27 13.33 36.00 13.33 21.21 22.22 20.00 24.14 27.03 29.41 20.00 21.05 25.93 14.29 31.82 31.03 21.88 16.67 30.00 6.45 18.18 38.89 22.73 17.50 28.12 K intron_retention Fit1,noncoding_10535,Ack chr3L + chr3L_4104119_4104202 chr3L_4104118_4104119;chr3L_4104202_4104203 chr3L_4103647_4104118;chr3L_4104203_4107121 45.80 38.89 31.82 52.94 27.78 30.00 34.48 25.00 35.85 NA NA 53.33 56.25 40.00 52.00 40.00 36.84 62.50 61.90 53.57 42.86 20.00 52.63 28.57 45.45 26.09 50.00 54.55 83.33 26.67 30.00 54.55 50.00 41.67 46.15 38.89 NA NA 40.00 50.00 46.15 51.35 27.78 45.00 75.00 57.89 50.00 53.85 45.00 40.00 50.00 45.45 NA 66.67 32.00 53.33 47.06 47.37 K cassette Sdc,I_chr2R_17282542_17285569,RI_chr2R_17286086_17286391,I_chr2R_17286089_17286391,I_chr2R_17286819_17367595,I_chr2R_17324594_17367595 chr2R - chr2R_17282551_17286679;chr2R_17282551_17286391 chr2R_17282551_17285569;chr2R_17286089_17286679,chr2R_17286089_17286391 chr2R_17285570_17286088 chr2R_17282383_17282550;chr2R_17286680_17286818 83.42 88.39 76.36 93.68 73.91 74.00 74.19 82.31 85.35 74.03 68.75 78.43 48.05 84.09 86.36 91.82 84.71 75.00 78.79 86.02 83.54 83.96 83.62 83.47 81.61 74.23 78.91 67.39 83.62 90.00 85.71 86.76 84.21 80.98 91.95 77.55 83.42 88.37 78.31 63.27 79.41 81.90 86.08 93.96 78.45 87.27 77.55 86.42 85.88 78.85 82.31 81.48 90.98 84.72 76.81 81.71 90.35 92.45 K intron_retention mRpS25 chrX - chrX_14476389_14476531 chrX_14476388_14476389;chrX_14476531_14476532 chrX_14476154_14476388;chrX_14476532_14476726 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 1.28 0.00 0.83 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention TfIIS chr2L - chr2L_15060367_15060432 chr2L_15060366_15060367;chr2L_15060432_15060433 chr2L_15058919_15060366;chr2L_15060433_15060753 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG14741 chr3R - chr3R_7900616_7900895;chr3R_7900593_7900895 chr3R_7900613_7900895 chr3R_7900896_7901144;chr3R_7900525_7900592 28.26 24.39 20.00 39.37 42.11 31.03 19.23 35.48 31.97 33.33 20.83 28.26 10.00 40.00 36.73 30.43 30.30 38.30 39.68 31.82 41.18 30.61 33.93 22.86 23.81 32.56 30.95 18.18 34.67 27.27 26.42 25.00 19.00 25.64 25.81 29.87 27.14 26.47 37.50 25.00 22.58 35.19 27.50 26.39 17.39 21.88 31.25 22.62 30.00 9.09 27.03 33.33 31.82 27.27 27.78 37.50 31.43 21.52 K alternative_acceptor CG42331 chr3R + chr3R_20605978_20606070 chr3R_20605978_20606046 chr3R_20605889_20605977;chr3R_20606071_20606166 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor Pli,I_chr3R_19691378_19715415 chr3R - chr3R_19714842_19715415 chr3R_19714914_19715415 chr3R_19715416_19715515;chr3R_19714779_19714841 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 96.15 NA 100.00 100.00 100.00 100.00 100.00 93.75 100.00 90.91 91.67 100.00 NA 92.31 100.00 88.89 NA 100.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 NA 85.71 100.00 83.33 NA 90.00 93.33 95.00 100.00 95.24 NA 100.00 NA 100.00 100.00 87.50 100.00 100.00 NA NA 92.86 NA NA 100.00 N jcn_only_AA CG31919,CG33995,F_chr2L_5045484_5046146 chr2L + chr2L_5045926_5046146 chr2L_5045926_5045981 chr2L_5045822_5045925;chr2L_5046147_5046246 0.00 0.00 0.00 6.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG5028 chr3R + chr3R_21508154_21508779 chr3R_21508153_21508154;chr3R_21508779_21508780 chr3R_21508078_21508153;chr3R_21508780_21509105 13.79 3.23 18.60 18.64 7.69 15.38 31.82 12.12 14.44 NA 4.65 10.39 34.48 23.33 10.00 15.87 46.88 18.92 19.15 14.77 8.00 5.26 8.51 10.00 18.18 20.00 18.52 NA 25.00 5.00 10.91 15.00 8.33 21.57 9.52 0.00 5.71 15.00 7.50 16.67 12.50 14.93 15.15 8.33 3.23 9.76 13.79 2.86 17.95 18.18 14.71 0.00 4.17 8.33 23.81 13.79 14.89 0.00 K alternative_donor CG31612,E_chr2L_21775447_21821182,CG11630 chr2L - chr2L_21775447_21795393 chr2L_21775447_21795245 chr2L_21775400_21775446;chr2L_21795394_21795445 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 NA 100.00 87.50 NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA 100.00 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA K intron_retention eIF4AIII chr3R + chr3R_4139193_4139252 chr3R_4139192_4139193;chr3R_4139252_4139253 chr3R_4138945_4139192;chr3R_4139253_4139619 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 3.70 2.50 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.54 0.00 0.00 0.00 1.55 0.00 0.67 0.00 1.82 0.00 0.00 0.00 1.16 0.00 0.00 2.06 3.03 K alternative_donor CG8412,I_chr3R_5583152_5583200 chr3R + chr3R_5582916_5582977 chr3R_5582920_5582977 chr3R_5582978_5583151;chr3R_5582787_5582915 52.94 54.55 NA 88.89 NA NA 78.57 66.67 53.33 NA NA 47.62 NA NA 75.00 NA 66.67 NA NA 50.00 NA 58.82 50.00 52.94 36.36 NA 45.83 55.00 61.54 50.00 40.00 NA 50.00 66.67 NA 37.50 42.86 47.62 50.00 58.82 NA 50.00 77.78 57.69 36.36 46.15 66.67 40.00 71.43 50.00 45.45 NA NA 63.64 70.00 37.50 60.00 NA K intron_retention cathD chr2R - chr2R_3709991_3710053 chr2R_3709990_3709991;chr2R_3710053_3710054 chr2R_3709649_3709990;chr2R_3710054_3711055 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.21 K intron_retention RI_chr3R_5165997_5180143,CG33936,I_chr3R_5167726_5180143,R_chr3R_5168211_5180143,RI_chr3R_5168214_5168297,I_chr3R_5168617_5180143,snoRNA:Me18S-G1358a,RI_chr3R_5183458_5183705 chr3R + chr3R_5168214_5168297 chr3R_5168213_5168214;chr3R_5168297_5168298 chr3R_5168114_5168213;chr3R_5168298_5168397 33.71 35.00 52.17 21.95 50.00 52.94 34.09 28.12 52.00 38.46 14.29 17.98 13.21 32.35 38.89 50.00 42.42 26.09 45.16 19.40 26.67 35.71 59.09 32.14 50.00 40.00 57.14 50.00 25.00 50.00 34.48 0.00 33.33 38.89 39.02 41.18 NA 28.57 27.27 23.40 13.33 38.89 27.59 31.58 8.70 14.29 25.00 35.48 36.67 5.71 37.14 46.67 NA 12.50 30.95 11.76 NA 12.50 K intron_retention Mes2,CEF_chr3L_22939285_22939369 chr3L + chr3L_22939285_22939369 chr3L_22939284_22939285;chr3L_22939369_22939370 chr3L_22939218_22939284;chr3L_22939370_22939469 60.00 58.70 56.52 42.25 57.58 47.50 48.65 56.88 59.68 38.46 50.00 53.41 49.21 62.26 44.44 62.92 54.35 57.58 54.84 51.89 35.00 62.50 75.93 60.00 66.67 45.45 65.85 65.00 86.21 62.50 54.69 74.07 76.00 51.06 65.12 53.57 69.70 65.62 58.70 59.09 84.21 54.90 55.10 61.90 80.95 72.73 76.60 70.59 55.00 80.49 62.30 66.67 65.38 68.00 51.92 73.33 62.50 76.00 K cassette tou,I_chr2R_7468394_7468453,RI_chr2R_7474644_7475275,I_chr2R_7479681_7491857,I_chr2R_7504956_7505020 chr2R - chr2R_7468904_7470519 chr2R_7468904_7469132;chr2R_7469255_7470519 chr2R_7469133_7469254 chr2R_7468454_7468903;chr2R_7470520_7474530 71.29 76.32 74.47 63.01 64.13 73.03 71.30 67.42 75.81 70.71 61.18 75.38 67.50 71.43 74.34 77.48 77.63 77.01 56.60 68.87 69.62 79.63 73.85 78.11 78.76 66.32 71.35 75.96 60.53 69.68 64.55 67.96 69.71 73.47 71.43 66.27 71.08 70.90 71.64 67.48 69.23 72.49 72.84 71.90 66.91 70.97 80.87 57.43 74.74 71.00 77.84 73.86 80.00 71.29 70.27 69.23 70.41 65.69 K intron_retention norpA,I_chrX_4219265_4219380 chrX + chrX_4248057_4251072 chrX_4248056_4248057;chrX_4251072_4251073 chrX_4247997_4248056;chrX_4251073_4251309 36.84 41.67 41.38 72.00 35.29 36.36 52.00 26.32 27.42 NA NA 20.00 50.00 29.41 50.00 41.18 42.86 39.13 55.00 18.75 66.67 36.84 22.58 33.33 35.71 39.29 30.77 NA NA 43.75 42.86 NA 43.75 40.48 44.44 NA 27.27 23.81 33.33 45.83 NA 34.00 52.94 32.00 NA NA NA 30.77 37.78 36.36 18.52 22.22 NA NA 46.88 NA 28.57 NA K intron_retention cno,I_chr3R_999718_999986,I_chr3R_999737_999777,noncoding_14652,F_chr3R_1006551_1006778,I_chr3R_1006714_1006778 chr3R - chr3R_1006714_1006778 chr3R_1006713_1006714;chr3R_1006778_1006779 chr3R_1006614_1006713;chr3R_1006779_1006837 63.64 NA NA 83.33 NA NA 63.64 87.50 88.89 NA NA NA NA NA NA NA NA NA NA 73.33 NA 45.45 NA NA NA NA NA NA 47.06 NA NA NA 60.87 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 61.54 NA NA NA NA NA NA NA NA NA NA K jcn_only_AA Nedd4,I_chr3L_17532828_17532882,I_chr3L_17532828_17533787,I_chr3L_17534504_17535990,I_chr3L_17536813_17536863 chr3L + chr3L_17532828_17533787;chr3L_17532828_17533790 chr3L_17532828_17532882 chr3L_17532728_17532827;chr3L_17533791_17533887 6.67 NA NA 68.97 NA 0.00 9.38 11.54 4.08 NA NA 1.89 NA NA 0.00 10.00 NA 33.33 8.70 6.67 NA NA 2.86 0.00 NA 0.00 6.67 NA 3.03 NA 16.00 NA 8.00 2.78 4.00 0.00 7.89 3.12 3.33 9.09 NA 17.50 NA 8.33 NA NA NA 20.00 0.00 NA 16.13 6.25 NA NA 16.00 NA NA NA K intron_retention AnnIX,I_chr3R_16895383_16895999 chr3R + chr3R_16894742_16895034 chr3R_16894741_16894742;chr3R_16895034_16895035 chr3R_16894560_16894741;chr3R_16895035_16895382 2.39 1.98 2.00 3.01 2.36 2.71 3.67 2.39 2.43 0.87 1.32 2.92 2.35 2.93 2.19 2.64 3.45 1.02 3.02 1.82 1.46 4.03 2.55 2.42 3.40 4.06 2.82 2.44 2.58 2.51 1.99 1.72 2.96 2.52 2.32 5.70 1.24 0.77 1.75 2.99 4.07 2.10 2.76 2.01 0.00 1.81 0.66 3.78 2.01 0.84 2.05 2.44 2.12 1.67 3.26 1.03 1.17 2.70 K alternative_donor Best1,I_chr3R_5991957_5995913,RI_chr3R_5993184_5995905 chr3R - chr3R_5989579_5990296;chr3R_5989579_5990058 chr3R_5989579_5990440 chr3R_5988921_5989578;chr3R_5990441_5990683 89.26 90.74 88.61 91.18 96.05 88.73 89.87 87.18 91.18 97.85 86.36 90.00 84.00 90.36 88.42 89.25 93.10 91.23 87.84 91.72 90.14 53.41 87.41 91.41 89.39 88.14 89.29 94.12 87.88 90.00 87.63 83.67 78.87 87.70 88.00 87.67 89.26 90.18 91.45 88.39 88.06 91.89 87.69 88.14 89.33 88.29 90.48 84.06 89.55 89.74 88.89 87.65 90.62 90.80 87.21 90.10 90.91 86.36 N alternative_donor I_chrX_4000307_4003527,CG4857 chrX + chrX_4011929_4011996;chrX_4011315_4011996;chrX_4011429_4011996 chrX_4011270_4011996 chrX_4011997_4012308;chrX_4011093_4011269 19.35 26.32 21.05 16.67 37.50 14.29 6.90 39.47 21.82 41.67 25.00 26.83 15.79 31.25 21.74 14.29 16.67 24.00 20.83 24.32 10.00 33.33 15.79 15.79 14.29 30.00 25.00 8.33 0.00 25.00 8.00 10.00 19.35 27.27 13.33 38.10 19.05 17.65 34.48 18.60 9.09 17.39 19.05 25.00 9.09 26.32 18.75 4.17 15.22 25.00 19.35 31.25 28.57 10.00 7.14 25.00 7.69 23.08 K jcn_only_AD CG16953,I_chr3R_16411011_16411267 chr3R - chr3R_16411011_16411267 chr3R_16411011_16411124 chr3R_16410911_16411010;chr3R_16411268_16411367 99.63 100.00 100.00 99.53 100.00 100.00 99.48 99.49 99.63 100.00 97.04 99.63 98.43 99.07 99.46 97.73 100.00 100.00 99.25 99.78 100.00 99.08 98.83 99.43 98.92 100.00 98.91 99.32 99.72 100.00 97.67 100.00 99.78 99.03 99.23 99.60 100.00 98.17 100.00 99.73 100.00 99.64 95.45 100.00 100.00 99.73 100.00 100.00 99.55 100.00 99.45 98.78 99.04 100.00 98.36 100.00 98.96 99.75 K intron_retention B52,F_chr3R_9488762_9491174,E_chr3R_9488770_9491174,RI_chr3R_9489655_9489713 chr3R + chr3R_9489655_9489713 chr3R_9489654_9489655;chr3R_9489713_9489714 chr3R_9489631_9489654;chr3R_9489714_9489813 87.30 NA NA NA NA NA NA 80.00 95.00 NA NA 90.91 88.89 90.00 90.91 100.00 NA NA NA 100.00 NA NA 73.33 NA NA NA 100.00 NA NA NA 60.00 NA NA 78.57 NA NA 70.00 NA NA 53.85 NA 66.67 NA 60.00 NA NA NA NA 85.71 NA NA NA NA NA 90.00 NA NA NA K jcn_only_AD CG33129,I_chr2L_10966410_10967142,noncoding_2515,I_chr2L_10966622_10967108 chr2L - chr2L_10966622_10968104;chr2L_10966622_10968083;chr2L_10966622_10968133 chr2L_10966622_10967855 chr2L_10966522_10966621;chr2L_10968134_10968152 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 3.77 0.00 0.00 0.88 0.00 0.00 0.00 1.17 0.00 0.00 NA NA NA 0.00 NA NA 0.00 NA 0.00 3.23 0.00 0.89 NA NA NA NA NA NA 0.00 0.68 0.00 NA 0.00 3.45 NA 3.03 0.61 NA NA 4.76 NA NA 0.00 NA 4.35 1.15 K alternative_donor l(2)03709,I_chr2R_14707617_14707700,I_chr2R_14708048_14708095 chr2R + chr2R_14707271_14707700 chr2R_14707617_14707700 chr2R_14707701_14707800;chr2R_14707129_14707270 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Tfb1 chr2R + chr2R_10250627_10250756 chr2R_10250627_10250749 chr2R_10250565_10250626;chr2R_10250757_10251018 100.00 NA 90.00 100.00 100.00 90.00 100.00 100.00 100.00 87.50 NA 93.75 NA NA 91.67 100.00 NA 90.91 100.00 100.00 100.00 NA 93.33 90.91 100.00 100.00 100.00 NA 100.00 92.86 93.75 100.00 96.55 100.00 NA 100.00 94.74 NA 90.91 90.00 100.00 100.00 NA NA 100.00 100.00 NA 94.44 100.00 100.00 100.00 NA 87.50 NA 100.00 100.00 NA 87.50 K intron_retention robo chr2R - chr2R_18587540_18588382 chr2R_18587539_18587540;chr2R_18588382_18588383 chr2R_18587307_18587539;chr2R_18588383_18588449 11.11 7.14 6.67 6.12 11.76 9.52 29.73 9.30 11.48 8.33 20.00 8.51 0.00 9.52 12.00 4.00 5.88 30.00 15.38 8.57 13.33 40.74 11.11 6.67 30.77 10.53 26.67 NA 41.67 11.76 3.23 NA 12.50 5.71 NA NA 14.29 0.00 17.65 12.90 NA 10.00 21.05 NA NA NA NA 10.71 6.52 NA 20.00 20.00 NA NA 6.67 NA NA 20.00 K alternative_acceptor mub,RI_chr3L_21901021_21901163,I_chr3L_21908756_21909179 chr3L + chr3L_21914088_21914192;chr3L_21914088_21914153;chr3L_21914088_21914156 chr3L_21914088_21914141 chr3L_21914067_21914087;chr3L_21914193_21914427 61.54 57.58 60.00 75.00 42.86 60.00 61.54 61.11 68.00 75.00 42.86 65.71 58.82 62.50 68.42 66.67 36.36 64.71 NA 54.35 66.67 70.73 68.52 62.50 62.50 61.54 51.61 73.68 63.16 55.17 73.33 36.36 50.00 70.83 65.00 79.17 59.09 57.50 65.91 60.87 50.00 73.91 69.23 57.58 53.33 54.17 57.14 39.13 68.57 58.62 62.16 61.54 58.82 68.00 62.50 59.09 50.00 38.46 K jcn_only_AA wge chr3R - chr3R_18542354_18542655;chr3R_18542387_18542655 chr3R_18542390_18542655 chr3R_18542656_18542685;chr3R_18540256_18542353 4.04 2.04 4.76 5.88 5.00 NA 10.00 8.33 3.45 0.00 NA 2.08 NA NA 8.00 NA NA NA NA 7.14 NA 12.37 4.69 1.35 2.94 4.55 0.00 10.00 6.45 3.77 2.44 8.57 1.64 2.86 0.00 7.69 2.47 2.00 4.62 8.00 2.63 4.00 NA 4.08 0.00 6.90 0.00 4.76 7.14 0.00 9.09 0.00 2.70 NA 0.00 8.33 0.00 5.26 K intron_retention CG32627,CG32628 chrX + chrX_13608993_13609065 chrX_13608992_13608993;chrX_13609065_13609066 chrX_13608857_13608992;chrX_13609066_13609644 100.00 NA NA NA NA NA 100.00 NA NA NA NA 91.67 NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 88.89 88.89 NA NA NA NA NA NA NA NA NA NA NA NA K alternative_acceptor MB8.chr3R.pasa.66,CG1105,RI_chr3R_2892020_2892252,I_chr3R_2892305_2892645 chr3R - chr3R_2892020_2892645 chr3R_2892305_2892645 chr3R_2892646_2892745;chr3R_2891920_2892019 5.08 5.71 3.70 1.59 3.12 5.88 6.12 5.00 4.55 4.00 4.17 7.27 10.71 3.23 4.44 8.11 4.00 6.90 6.90 5.45 0.00 2.27 5.56 4.17 7.41 4.55 7.89 7.14 0.00 6.06 7.69 6.67 5.77 5.08 3.12 2.78 4.44 4.65 5.13 3.92 8.82 4.29 4.00 5.26 6.90 6.52 6.12 10.81 4.76 6.25 6.56 7.69 4.55 4.17 4.65 2.86 2.13 11.11 K jcn_only_AD I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,I_chr3R_17183927_17184513,I_chr3R_17183927_17185306,RI_chr3R_17184319_17184513,I_chr3R_17184319_17185084,I_chr3R_17184319_17185284,noncoding_18168,RI_chr3R_17184792_17185306 chr3R - chr3R_17183927_17184513;chr3R_17183927_17184082;chr3R_17183927_17200781 chr3R_17183927_17185306 chr3R_17183827_17183926 0.00 2.56 0.00 0.00 0.00 4.08 3.33 3.17 1.67 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 2.13 0.79 0.00 3.28 2.22 0.00 2.82 0.00 0.00 0.00 0.00 0.00 0.79 1.49 1.85 1.37 6.12 1.49 0.00 1.45 2.83 0.00 0.00 0.00 1.92 0.00 0.00 1.92 0.00 0.94 1.11 2.90 0.95 0.00 0.00 1.09 0.00 2.13 0.00 0.00 N intron_retention CG16971,CG33229,I_chr3L_225856_225909,RI_chr3L_225919_226004,I_chr3L_229245_230186 chr3L + chr3L_224779_224972 chr3L_224778_224779;chr3L_224972_224973 chr3L_224715_224778;chr3L_224973_225140 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.46 82.86 80.39 100.00 87.69 100.00 100.00 100.00 87.91 100.00 100.00 86.05 77.06 71.88 86.57 85.94 100.00 100.00 100.00 100.00 100.00 74.73 100.00 80.00 100.00 73.17 84.62 100.00 100.00 72.09 100.00 76.47 85.92 100.00 86.15 100.00 100.00 100.00 80.95 100.00 85.56 88.89 75.00 83.02 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor nrv2,I_chr2L_6791842_6794492,I_chr2L_6793397_6794492,I_chr2L_6793405_6793916,I_chr2L_6793405_6794499,I_chr2L_6793684_6794492 chr2L - chr2L_6793405_6794328;chr2L_6793405_6794492;chr2L_6793405_6794316 chr2L_6793405_6794551 chr2L_6793305_6793404;chr2L_6794552_6794592 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention klar,I_chr3L_462559_472609,RI_chr3L_517594_539898 chr3L - chr3L_451772_452837 chr3L_451771_451772;chr3L_452837_452838 chr3L_451127_451771;chr3L_452838_453488 1.70 2.45 0.65 3.39 2.22 1.86 3.26 2.80 2.49 0.99 1.70 1.29 1.92 0.96 2.83 1.33 2.71 3.32 2.10 2.10 2.37 2.10 1.20 2.00 1.07 0.50 2.08 3.93 1.04 2.28 1.32 1.66 1.11 2.04 1.41 1.02 1.15 1.54 1.67 1.79 1.24 1.34 1.52 1.94 1.45 1.76 1.37 1.27 2.63 1.04 1.97 2.20 1.48 1.64 2.02 1.97 1.56 0.92 K intron_retention CG9305 chr2L - chr2L_13372254_13372307 chr2L_13372253_13372254;chr2L_13372307_13372308 chr2L_13371427_13372253;chr2L_13372308_13372636 0.00 0.00 0.00 1.56 0.00 0.00 4.76 3.12 0.00 0.00 0.00 2.50 0.00 2.38 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 1.15 0.00 1.04 0.00 0.00 0.00 0.00 3.67 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 K intron_retention bl,I_chr2R_16481586_16483061,mir-7 chr2R + chr2R_16493357_16493948 chr2R_16493356_16493357;chr2R_16493948_16493949 chr2R_16493187_16493356;chr2R_16493949_16494359 0.00 0.00 0.00 0.00 0.98 0.00 0.00 0.00 1.16 0.00 0.00 3.85 1.23 1.63 0.74 0.00 0.00 0.00 1.64 2.04 0.00 0.00 0.00 1.02 0.00 0.76 0.00 0.00 1.04 0.00 0.62 0.00 0.61 0.00 0.00 0.85 0.00 0.00 1.35 0.00 0.93 0.83 0.00 0.00 0.00 1.27 0.56 1.55 0.78 0.00 0.00 0.00 0.00 1.13 0.00 0.00 0.00 0.00 K intron_retention wds,egh,mit(1)15 chrX + chrX_2481420_2481473 chrX_2481419_2481420;chrX_2481473_2481474 chrX_2480794_2481419;chrX_2481474_2482268 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 1.56 1.19 3.39 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 4.08 1.43 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 2.36 K intron_retention CG14450,noncoding_14201 chr3L - chr3L_22720578_22720631 chr3L_22720577_22720578;chr3L_22720631_22720632 chr3L_22720157_22720577;chr3L_22720632_22720843 7.69 NA NA 7.69 NA NA NA NA 13.64 NA NA 0.00 NA NA NA NA NA NA NA 10.00 NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA NA NA NA 17.39 17.65 6.67 NA NA NA NA NA 6.67 NA K jcn_only_AA Cip4,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4363128_4363987 chr3L_4363386_4363987 chr3L_4363988_4364067;chr3L_4363028_4363127 0.00 0.00 0.67 0.88 0.00 1.74 6.41 0.00 0.31 0.00 0.00 1.08 1.08 0.00 0.00 1.22 0.00 0.00 0.00 0.26 0.00 0.62 0.56 0.00 0.71 1.08 1.27 0.00 1.48 0.00 0.46 0.00 0.00 0.45 0.57 0.00 0.00 0.00 0.00 0.62 2.63 0.00 0.00 0.62 0.00 0.74 0.44 0.55 0.00 0.00 0.00 0.00 0.63 0.00 1.83 0.43 0.00 1.13 K intron_retention pcm chrX - chrX_19383092_19383174 chrX_19383091_19383092;chrX_19383174_19383175 chrX_19382772_19383091;chrX_19383175_19383443 20.00 30.43 0.00 20.00 NA NA 44.44 15.62 21.21 NA NA 16.67 NA NA 26.67 NA NA 14.29 6.67 21.43 NA 56.25 23.08 21.43 NA NA 28.57 NA 29.41 15.38 43.75 6.67 10.00 25.00 12.50 14.29 16.28 12.00 25.00 16.22 60.00 15.38 NA 15.00 0.00 11.11 NA 26.67 20.00 20.00 28.57 23.08 NA NA 16.67 21.05 0.00 NA K intron_retention Dp,I_chr2R_9111166_9112971,REI_chr2R_9113257_9113316 chr2R + chr2R_9112646_9112971 chr2R_9112645_9112646;chr2R_9112971_9112972 chr2R_9112620_9112645;chr2R_9112972_9113071 100.00 100.00 90.00 94.44 100.00 NA 100.00 100.00 100.00 100.00 NA 96.43 100.00 NA 100.00 100.00 100.00 90.00 100.00 100.00 NA 100.00 94.74 93.75 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 94.12 93.33 NA 100.00 100.00 100.00 100.00 100.00 87.50 100.00 93.33 90.91 100.00 100.00 NA NA 100.00 NA 94.12 100.00 K alternative_donor PNUTS,I_chr2L_870553_871317 chr2L + chr2L_870553_871340 chr2L_871275_871340 chr2L_871341_871417;chr2L_870478_870552 31.94 20.00 52.00 39.58 20.83 30.43 31.68 25.32 19.71 23.08 32.14 33.33 31.37 34.78 44.83 43.33 23.53 41.67 38.46 47.06 28.57 27.66 24.18 26.32 32.43 31.03 34.48 36.11 37.78 20.00 46.43 55.00 21.67 31.94 32.43 37.50 12.20 16.07 22.50 32.08 51.72 28.77 26.32 15.12 48.00 43.48 21.15 38.30 31.58 33.33 29.51 31.82 33.33 43.48 35.00 31.82 35.71 29.17 K intron_retention egr,I_chr2R_5970999_5971058 chr2R + chr2R_5969138_5970146 chr2R_5969137_5969138;chr2R_5970146_5970147 chr2R_5969012_5969137;chr2R_5970147_5970472 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.61 0.31 0.00 0.67 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 2.02 0.46 0.41 0.98 0.00 0.81 0.00 0.86 0.40 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.47 0.43 0.00 0.88 0.00 0.41 0.00 0.00 0.53 0.00 0.00 0.37 0.27 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG7082,RI_chr2L_2224527_2224586,I_chr2L_2229179_2229265 chr2L + chr2L_2220952_2223265 chr2L_2220952_2223242 chr2L_2220812_2220951;chr2L_2223266_2223633 100.00 90.00 100.00 95.24 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 87.50 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 NA 90.91 100.00 100.00 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K intron_retention RpL9,I_chr2L_11003236_11003510 chr2L - chr2L_11003239_11003510 chr2L_11003238_11003239;chr2L_11003510_11003511 chr2L_11002750_11003238;chr2L_11003511_11003610 0.00 0.00 0.02 0.01 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.02 0.00 0.02 0.00 0.03 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.10 0.02 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.01 0.02 0.00 0.02 0.01 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG2017 chr3R - chr3R_1686127_1687891;chr3R_1686127_1688092;chr3R_1686127_1687510 chr3R_1686127_1687468 chr3R_1685454_1686126;chr3R_1688093_1688097 21.54 20.51 21.74 35.00 27.03 20.59 25.00 33.90 20.22 13.16 29.27 27.16 21.62 28.21 28.57 30.61 31.25 25.58 27.08 20.00 18.18 12.94 12.50 21.88 20.00 27.45 22.78 17.50 26.58 14.52 24.72 18.42 18.03 20.63 23.81 22.64 12.20 12.90 17.91 17.50 18.75 21.95 28.12 21.54 12.77 22.03 13.04 19.23 32.86 32.76 23.44 16.98 21.05 19.57 24.49 16.36 14.29 14.29 K alternative_acceptor Cf2,I_chr2L_4882802_4882864 chr2L - chr2L_4882366_4882888 chr2L_4882493_4882888 chr2L_4882889_4882964;chr2L_4881215_4882365 100.00 100.00 100.00 90.91 100.00 100.00 100.00 92.31 100.00 91.67 100.00 94.44 100.00 100.00 85.71 100.00 100.00 100.00 87.50 93.75 100.00 100.00 100.00 92.86 100.00 85.71 100.00 94.12 100.00 96.30 100.00 91.67 93.75 100.00 100.00 100.00 93.75 90.91 87.50 93.33 93.33 100.00 100.00 100.00 94.44 100.00 100.00 97.56 94.12 100.00 92.86 87.50 85.71 100.00 88.89 100.00 100.00 96.15 K intron_retention piwi,RI_chr2L_10986838_10987248 chr2L - chr2L_10983777_10983895 chr2L_10983776_10983777;chr2L_10983895_10983896 chr2L_10983666_10983776;chr2L_10983896_10984087 0.00 0.00 3.33 4.35 0.00 7.41 2.94 4.08 5.26 0.00 0.00 2.90 0.00 0.00 2.70 7.89 0.00 0.00 2.63 0.00 0.00 0.00 0.00 2.38 0.00 0.00 3.33 0.00 0.00 NA 5.13 13.64 6.25 1.85 13.64 13.04 0.00 5.88 4.17 0.00 5.88 3.39 0.00 0.00 0.00 0.00 0.00 0.00 6.06 0.00 6.82 3.70 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG32412 chr3L - chr3L_5894461_5894516 chr3L_5894460_5894461;chr3L_5894516_5894517 chr3L_5894253_5894460;chr3L_5894517_5894660 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.26 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.45 1.36 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD CG17082,I_chr2R_632143_635290,R_chr2R_642176_644740,I_chr2R_644094_644145,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_631984_636726;chr2R_631907_636726;chr2R_631971_636726;chr2R_632143_636726 chr2R_632083_636726 chr2R_636727_636891;chr2R_631902_631906 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA N cassette Gprk2 chr3R + chr3R_27280223_27280928 chr3R_27280223_27280296;chr3R_27280487_27280928 chr3R_27280297_27280486 chr3R_27280117_27280222;chr3R_27280929_27281177 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 76.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AA CG5522 chr2R + chr2R_12671388_12675659 chr2R_12671388_12672274 chr2R_12671319_12671387 2.99 2.73 1.19 1.42 5.43 4.23 3.29 3.31 5.05 0.00 1.10 5.88 2.31 0.00 3.45 3.94 5.62 3.45 10.28 7.37 1.20 0.00 3.09 4.09 2.27 10.00 5.69 0.00 2.74 1.74 6.10 6.25 3.75 1.99 8.75 2.82 0.53 2.54 1.82 1.89 2.17 3.43 2.50 2.40 11.90 8.47 1.59 4.84 3.03 1.14 4.41 3.15 0.00 0.00 6.19 2.02 1.37 2.99 K alternative_acceptor CG31211 chr3R + chr3R_7777961_7778368;chr3R_7777961_7778390 chr3R_7777961_7778362 chr3R_7777954_7777960;chr3R_7778391_7778487 100.00 100.00 100.00 95.24 100.00 93.75 100.00 92.86 96.77 100.00 100.00 100.00 100.00 83.33 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 95.24 92.31 100.00 100.00 100.00 100.00 92.86 100.00 100.00 90.00 100.00 100.00 100.00 96.43 90.91 96.43 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 100.00 100.00 100.00 93.33 94.74 95.45 96.00 94.44 K alternative_donor sec23,I_chr3R_1474873_1475080,I_chr3R_1474899_1475080,I_chr3R_1474960_1475051,I_chr3R_1477727_1478102 chr3R + chr3R_1474960_1475080;chr3R_1474873_1475080 chr3R_1474899_1475080 chr3R_1475081_1475151;chr3R_1474860_1474872 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 1.16 6.25 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 4.35 0.00 0.00 0.00 K jcn_only_AA eIF-1A chr3R + chr3R_14100479_14100547;chr3R_14100479_14100566 chr3R_14100479_14100588 chr3R_14100417_14100478;chr3R_14100589_14100702 98.67 98.67 99.27 98.70 98.87 98.58 98.53 98.38 99.10 96.90 98.62 98.49 96.97 99.49 98.43 99.35 98.96 98.77 98.94 99.45 99.10 99.16 99.01 97.99 98.78 95.76 98.95 98.38 95.62 96.30 98.99 100.00 99.40 98.55 98.76 99.29 98.28 98.18 98.61 96.93 95.92 98.38 98.04 95.45 98.72 98.15 98.99 95.00 98.85 97.87 98.54 98.79 99.51 99.04 99.39 98.40 99.42 96.27 K intron_retention MED26,I_chr4_807836_808040,I_chr4_807836_808089 chr4 - chr4_807836_808077 chr4_807835_807836;chr4_808077_808078 chr4_807736_807835;chr4_808078_808140 0.00 0.00 3.03 9.52 0.00 0.00 3.12 2.78 6.00 0.00 NA 3.23 3.03 6.06 0.00 1.37 0.00 8.70 0.00 6.90 0.00 5.13 0.00 4.17 0.00 0.00 5.41 0.00 1.89 0.00 0.00 0.00 0.00 3.12 0.00 3.45 NA NA NA 0.00 0.00 1.92 3.70 0.00 NA 3.92 0.00 0.00 5.56 0.00 6.67 6.45 NA NA 0.00 NA NA 0.00 K alternative_acceptor CG42588 chr3L + chr3L_12811626_12811700 chr3L_12811626_12811681 chr3L_12810479_12811625;chr3L_12811701_12812337 60.00 NA NA 90.00 NA NA 53.85 53.85 52.94 NA NA NA NA NA NA 77.78 NA NA NA 70.00 NA NA NA NA NA NA NA NA NA NA NA NA 50.00 60.00 NA NA NA NA NA 66.67 NA 63.64 NA NA NA NA NA 54.55 NA NA NA NA NA NA 60.00 NA NA NA K intron_retention Ptpmeg,I_chr3L_353688_353782,I_chr3L_355125_355175 chr3L + chr3L_355377_355437 chr3L_355376_355377;chr3L_355437_355438 chr3L_355199_355376;chr3L_355438_355506 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 1.11 0.00 0.00 1.75 0.00 0.00 0.00 0.81 0.00 3.60 2.88 0.68 1.35 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.68 0.00 0.00 0.00 0.00 1.09 1.10 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 K intron_retention CG11790 chr3R + chr3R_20873641_20873746 chr3R_20873640_20873641;chr3R_20873746_20873747 chr3R_20873448_20873640;chr3R_20873747_20874071 0.00 0.00 0.00 0.74 0.00 0.00 1.83 1.89 0.49 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.95 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 1.43 0.00 0.00 1.52 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor pAbp,I_chr2R_14027838_14028996 chr2R + chr2R_14028922_14028996 chr2R_14028922_14028992 chr2R_14028916_14028921;chr2R_14028997_14029096 90.00 92.31 92.11 88.52 96.30 88.57 91.80 87.23 93.44 97.67 92.31 89.66 88.24 89.66 93.75 91.53 96.67 80.77 90.62 93.33 73.33 87.88 89.86 88.46 82.86 92.59 89.23 88.61 86.89 90.32 93.33 72.73 94.74 90.00 92.11 91.49 85.45 93.33 90.79 89.83 82.61 91.04 92.31 91.11 92.86 82.61 85.71 91.67 94.12 88.24 80.95 80.85 85.00 92.31 85.71 97.37 80.00 77.27 K intron_retention CG8726 chr2R - chr2R_3859035_3859141 chr2R_3859034_3859035;chr2R_3859141_3859142 chr2R_3858749_3859034;chr2R_3859142_3859511 0.00 0.00 8.33 4.55 3.57 0.00 6.90 0.00 3.33 0.00 8.00 0.00 0.00 0.00 6.06 3.45 0.00 0.00 0.00 0.00 0.00 21.74 2.67 3.77 10.00 0.00 0.00 7.84 0.00 4.26 3.45 0.00 8.00 2.44 0.00 14.29 2.90 4.65 0.00 1.47 26.09 5.63 0.00 4.44 6.25 0.00 0.00 0.00 3.51 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 4.00 N alternative_acceptor spir,I_chr2L_20334199_20334626,I_chr2L_20336550_20339058 chr2L + chr2L_20336550_20339244 chr2L_20336550_20336621 chr2L_20336470_20336549;chr2L_20339245_20339375 1.36 1.06 1.16 2.60 1.47 1.59 3.61 0.97 1.35 1.52 2.13 1.50 2.63 1.61 1.30 1.54 1.54 1.47 1.82 1.47 1.75 1.77 1.44 0.91 2.50 1.41 2.86 4.89 1.36 0.91 1.69 1.67 0.61 0.90 1.18 1.09 0.63 1.00 0.81 1.43 1.37 1.30 1.67 0.86 0.93 0.79 1.14 0.73 1.46 1.34 0.81 1.43 0.00 1.32 1.23 0.91 0.78 1.09 K intron_retention JhI-21,I_chr2L_12055360_12055714 chr2L - chr2L_12055360_12055901 chr2L_12055359_12055360;chr2L_12055901_12055902 chr2L_12055328_12055359;chr2L_12055902_12055978 2.50 2.61 3.03 3.55 1.35 1.15 4.33 2.92 2.90 3.82 1.28 0.94 1.63 0.00 3.17 4.57 5.94 2.29 4.17 1.68 3.55 3.57 4.43 2.63 2.50 2.05 4.03 3.12 8.00 1.65 0.57 1.18 6.56 2.90 0.00 8.86 0.90 0.58 0.86 2.49 0.00 2.71 3.06 1.97 0.00 2.94 1.89 1.46 2.59 4.85 3.30 1.26 0.00 0.00 3.77 0.00 0.00 0.00 K cassette Atet chr2L + chr2L_4334105_4341883 chr2L_4334105_4336449;chr2L_4336958_4341883 chr2L_4336450_4336957 chr2L_4333926_4334104;chr2L_4341884_4342198 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.45 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention sol chrX + chrX_21228215_21228283 chrX_21228214_21228215;chrX_21228283_21228284 chrX_21228072_21228214;chrX_21228284_21228910 1.47 0.92 0.93 1.57 0.00 3.16 4.65 1.53 1.54 1.14 0.00 1.20 0.00 0.00 1.80 2.50 0.00 3.81 0.00 1.02 0.00 1.39 1.44 0.00 2.99 4.35 3.88 8.86 3.32 1.00 0.00 1.95 1.47 0.00 1.14 2.23 1.97 0.00 1.71 1.89 3.68 1.35 0.00 0.00 0.70 2.12 2.67 1.74 1.88 1.43 1.72 0.00 0.00 1.61 2.13 0.61 2.31 1.81 K jcn_only_AA wfs1 chr3R - chr3R_18515737_18515796 chr3R_18515740_18515796 chr3R_18515797_18515895;chr3R_18514175_18515736 69.88 78.95 64.91 69.88 68.75 51.22 70.21 73.02 74.73 72.73 70.97 70.65 66.67 60.98 74.07 72.37 76.09 65.12 84.06 69.03 79.59 68.67 62.16 66.13 67.24 72.58 60.24 66.32 65.93 68.42 66.67 65.62 71.88 64.62 78.38 62.12 77.36 76.36 73.81 71.01 69.81 71.26 75.00 69.35 66.67 70.83 62.96 68.25 68.75 71.26 75.38 80.00 75.00 58.06 77.78 63.89 48.39 77.27 K jcn_only_AD cact,I_chr2L_16313451_16314337,RI_chr2L_16314859_16315116,I_chr2L_16323518_16323594,I_chr2L_16324901_16326020 chr2L - chr2L_16313451_16314450 chr2L_16313451_16314337 chr2L_16313351_16313450;chr2L_16314451_16314708 0.00 0.00 0.79 0.00 0.00 1.12 0.61 0.49 0.00 0.93 1.02 0.00 0.78 0.96 0.88 0.00 0.72 0.00 0.66 0.00 0.93 0.58 0.00 0.00 0.00 0.00 0.00 1.74 3.76 0.00 0.00 0.00 1.45 0.00 0.84 0.00 0.40 0.00 0.85 0.85 1.44 0.85 0.00 0.00 0.00 0.00 0.91 2.67 0.43 0.00 0.92 0.00 0.00 0.72 0.00 0.00 0.00 0.00 K jcn_only_AD cv-c,RI_chr3R_10258928_10265129,RI_chr3R_10301040_10306363,noncoding_16722,RI_chr3R_10306635_10307255 chr3R - chr3R_10306635_10307301 chr3R_10306635_10307255 chr3R_10306535_10306634;chr3R_10307302_10307304 8.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 8.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Tao-1 chrX - chrX_19465738_19465807 chrX_19465737_19465738;chrX_19465807_19465808 chrX_19465202_19465737;chrX_19465808_19465926 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 1.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG10576,I_chr3L_5758117_5758186 chr3L - chr3L_5757697_5757758 chr3L_5757696_5757697;chr3L_5757758_5757759 chr3L_5757534_5757696;chr3L_5757759_5757895 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention mam,I_chr2R_9898687_9913084 chr2R + chr2R_9878998_9879482 chr2R_9878997_9878998;chr2R_9879482_9879483 chr2R_9878711_9878997;chr2R_9879483_9879609 0.00 NA NA NA NA NA 8.70 0.00 4.88 NA NA 0.00 0.00 NA NA 2.56 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA 2.94 NA NA NA NA NA NA NA 11.76 NA NA NA NA 0.00 NA 2.44 NA NA NA NA NA 0.00 NA NA NA K alternative_acceptor CG4853,CG4866 chr2R + chr2R_13403035_13403104 chr2R_13403035_13403089 chr2R_13402085_13403034;chr2R_13403105_13403827 96.08 96.43 100.00 96.77 100.00 95.45 97.06 96.88 94.83 90.91 92.31 97.44 95.83 94.74 100.00 96.67 95.65 100.00 95.83 94.34 93.33 96.97 100.00 97.37 88.00 92.86 93.75 100.00 100.00 95.83 96.43 100.00 94.12 97.62 96.55 89.66 90.70 96.97 97.50 100.00 93.33 96.08 95.24 100.00 100.00 95.65 96.77 88.24 93.94 95.00 91.89 91.43 100.00 95.83 87.50 100.00 96.15 93.75 K intron_retention sqh,I_chrX_6118043_6119039,I_chrX_6118150_6118725,I_chrX_6118150_6118729,I_chrX_6118150_6118790,I_chrX_6118150_6118800 chrX - chrX_6118150_6119035 chrX_6118149_6118150;chrX_6119035_6119036 chrX_6118050_6118149;chrX_6119036_6119207 38.69 NA 60.00 NA NA NA NA NA 47.06 NA NA 41.67 NA NA 4.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 28.57 NA NA NA NA NA NA NA NA NA NA 31.58 NA 46.67 NA NA NA NA NA NA 35.71 NA NA NA NA NA 41.67 NA 13.33 NA K jcn_only_AD CD98hc,I_chr3R_3802791_3802855 chr3R - chr3R_3802791_3803283 chr3R_3802791_3802855 chr3R_3802691_3802790;chr3R_3803284_3803397 0.49 0.55 0.70 0.00 0.65 1.17 1.14 0.00 0.22 1.20 0.55 0.21 0.54 0.00 0.00 1.24 0.00 1.28 0.00 0.89 0.83 0.42 0.17 0.00 1.00 0.82 0.71 1.20 0.42 0.00 2.06 0.00 0.57 0.82 0.35 0.29 0.49 0.26 0.00 0.46 0.00 0.78 1.01 0.82 0.79 0.00 0.00 0.23 1.08 0.99 0.34 1.98 0.28 0.29 0.36 0.55 0.29 0.63 K alternative_acceptor I_chr2L_4834257_4835246,CG15626,I_chr2L_4837691_4837844,I_chr2L_4837780_4837844 chr2L - chr2L_4837640_4837844;chr2L_4837691_4837844 chr2L_4837780_4837844 chr2L_4837845_4837944;chr2L_4837602_4837639 13.51 8.33 9.68 19.05 14.81 7.69 24.32 19.05 11.39 9.09 9.68 16.67 10.00 7.14 12.20 11.11 19.23 2.63 9.09 8.33 13.89 16.28 10.71 11.76 25.00 20.59 22.50 21.21 20.00 9.52 12.12 11.54 16.67 14.29 12.50 25.00 10.87 13.51 10.20 22.22 30.00 10.61 19.23 13.51 17.24 15.38 12.12 22.22 12.12 12.90 16.67 12.50 5.71 17.39 17.65 15.62 9.30 14.29 K jcn_only_AA PDCD-5 chr3L - chr3L_16224502_16224573 chr3L_16224517_16224573 chr3L_16224574_16224642;chr3L_16224436_16224501 100.00 100.00 100.00 100.00 100.00 100.00 99.03 100.00 100.00 99.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.70 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.43 100.00 100.00 100.00 100.00 99.57 99.42 100.00 99.64 100.00 100.00 100.00 100.00 99.64 99.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor pan chr4 + chr4_128999_129066 chr4_128999_129052 chr4_128029_128998;chr4_129067_129408 100.00 100.00 100.00 94.44 NA 100.00 94.74 100.00 94.74 NA 87.50 100.00 100.00 88.89 100.00 95.45 100.00 100.00 100.00 92.31 NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 88.89 NA NA 100.00 NA NA NA NA NA 87.50 NA 100.00 100.00 88.89 NA NA NA NA 94.74 NA 100.00 NA NA NA 90.91 NA NA NA K alternative_acceptor SMC2,I_chr2R_10737857_10737917 chr2R - chr2R_10737857_10737917 chr2R_10737862_10737917 chr2R_10737918_10738017;chr2R_10737757_10737856 100.00 100.00 96.55 96.43 95.45 100.00 95.65 100.00 97.30 100.00 100.00 91.89 100.00 100.00 100.00 97.37 100.00 100.00 100.00 98.25 95.24 100.00 100.00 90.48 100.00 100.00 100.00 100.00 92.86 100.00 100.00 95.65 100.00 100.00 93.75 100.00 95.45 91.67 90.91 100.00 100.00 97.73 100.00 100.00 100.00 100.00 95.45 97.44 97.87 95.83 96.30 93.33 100.00 100.00 96.88 95.65 94.74 100.00 K intron_retention Pep,I_chr3L_17637180_17637918 chr3L - chr3L_17636827_17637990 chr3L_17636826_17636827;chr3L_17637990_17637991 chr3L_17636463_17636826;chr3L_17637991_17638018 0.75 0.00 1.92 1.83 0.00 1.03 3.02 2.56 0.74 0.00 0.00 2.03 3.39 0.96 0.50 0.98 0.00 0.00 0.00 1.10 0.94 1.10 1.49 0.98 2.21 0.62 3.40 2.56 0.60 0.75 0.66 0.00 0.59 1.37 0.75 1.05 0.36 0.00 1.26 0.84 1.03 0.61 1.50 0.72 0.00 0.34 0.88 1.44 0.45 1.54 0.37 1.06 0.00 0.77 0.45 0.00 0.00 0.31 K jcn_only_AA TER94,RI_chr2R_5880423_5880471 chr2R + chr2R_5880423_5880488 chr2R_5880423_5880471 chr2R_5880323_5880422;chr2R_5880489_5880571 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.11 0.00 0.00 0.21 0.00 0.27 0.25 0.17 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.28 0.00 0.46 0.00 0.00 0.27 0.00 0.00 0.00 0.40 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.19 K multi_cassette CG17082,R_chr2R_642176_644740,I_chr2R_644094_644145,RI_chr2R_644671_645068,I_chr2R_644671_645137,I_chr2R_645254_645312 chr2R + chr2R_642176_644740 chr2R_642176_643675;chr2R_643765_643820;chr2R_644094_644159;chr2R_644671_644740 chr2R_643676_643764;chr2R_643821_644093;chr2R_644160_644670 chr2R_642076_642175;chr2R_644741_644840 100.00 100.00 100.00 68.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 91.67 100.00 K alternative_acceptor CG7971,I_chr3L_1659363_1659845,I_chr3L_1667736_1667806 chr3L - chr3L_1664787_1664917 chr3L_1664845_1664917 chr3L_1664918_1664986;chr3L_1664532_1664786 100.00 100.00 98.44 100.00 100.00 100.00 100.00 98.72 99.26 100.00 100.00 99.34 98.28 97.87 100.00 100.00 100.00 98.08 100.00 98.81 100.00 98.78 100.00 100.00 100.00 100.00 98.72 98.59 99.41 99.33 98.33 100.00 99.68 98.92 98.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.40 100.00 98.46 99.32 99.22 98.21 99.01 100.00 98.81 100.00 100.00 98.68 98.68 99.62 K alternative_acceptor Srp19,I_chr3L_7340885_7340945 chr3L - chr3L_7340852_7340956 chr3L_7340885_7340956 chr3L_7340957_7341045;chr3L_7340785_7340851 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.00 100.00 100.00 96.97 100.00 100.00 97.50 100.00 100.00 100.00 97.06 98.21 100.00 100.00 100.00 100.00 100.00 100.00 97.30 100.00 100.00 100.00 100.00 100.00 100.00 97.92 100.00 98.08 97.50 100.00 100.00 100.00 100.00 K intron_retention CG14619,I_chrX_21869837_21869915 chrX + chrX_21869837_21869947 chrX_21869836_21869837;chrX_21869947_21869948 chrX_21869758_21869836;chrX_21869948_21870015 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,I_chr2R_20289332_20290093 chr2R - chr2R_20280727_20283565 chr2R_20280726_20280727;chr2R_20283565_20283566 chr2R_20279743_20280726;chr2R_20283566_20283698 12.20 16.67 13.04 9.20 12.77 8.89 24.44 10.00 15.48 15.00 13.16 15.09 18.18 17.14 18.18 14.29 24.24 14.71 15.79 10.89 10.00 2.82 10.61 8.16 4.65 12.20 11.94 27.78 13.46 13.21 8.51 17.07 10.00 14.52 11.63 9.09 8.05 7.50 10.71 20.59 11.63 11.36 20.00 12.12 7.41 9.26 15.62 12.00 22.22 10.42 11.48 4.17 17.24 14.29 17.02 6.52 6.25 14.58 K alternative_acceptor mus210,RI_chr2R_11200323_11202128 chr2R + chr2R_11199473_11199540 chr2R_11199473_11199537 chr2R_11199017_11199472;chr2R_11199541_11200322 12.28 14.29 11.63 13.89 12.28 15.52 8.08 14.00 10.31 6.90 17.65 10.92 10.53 20.75 10.53 16.36 16.98 11.63 7.46 10.75 13.04 13.54 11.69 15.94 10.64 14.86 12.20 9.46 14.47 15.28 10.14 11.76 13.49 15.00 15.91 12.50 9.46 12.77 13.33 15.22 18.42 12.26 12.50 8.47 10.81 12.77 10.53 14.00 12.73 15.15 8.89 10.00 9.09 13.64 10.00 10.71 11.76 11.11 K intron_retention CG11964 chr3R - chr3R_4770621_4770677 chr3R_4770620_4770621;chr3R_4770677_4770678 chr3R_4769187_4770620;chr3R_4770678_4770769 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 2.63 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA TfIIA-L chr3R + chr3R_23081693_23081763 chr3R_23081693_23081755 chr3R_23081448_23081692;chr3R_23081764_23081859 99.71 100.00 99.63 100.00 100.00 100.00 99.71 99.76 99.62 100.00 99.44 100.00 100.00 100.00 99.63 99.74 100.00 100.00 99.61 99.66 98.98 100.00 100.00 99.63 100.00 99.56 99.65 100.00 98.40 99.48 99.33 99.61 99.73 99.48 99.47 99.48 98.80 100.00 99.44 98.49 100.00 99.78 100.00 100.00 99.42 99.71 99.73 100.00 99.76 99.71 99.67 100.00 99.71 99.66 99.66 99.43 100.00 100.00 K jcn_only_AD CG30499,I_chr2R_3452363_3452552 chr2R - chr2R_3452363_3452562 chr2R_3452363_3452552 chr2R_3452263_3452362;chr2R_3452563_3452652 0.34 1.36 0.00 0.00 0.00 0.55 0.00 0.52 0.27 0.00 0.00 0.34 0.00 0.00 1.06 0.59 0.00 0.00 0.64 0.25 0.58 0.67 1.15 0.37 0.66 0.00 0.00 0.42 0.84 0.00 1.97 0.00 0.00 0.00 0.50 0.00 1.32 0.00 0.00 0.00 0.59 0.65 0.94 0.92 0.00 1.42 0.88 0.34 0.32 0.43 0.40 1.29 0.00 0.79 0.00 1.65 0.00 1.67 K intron_retention cora,I_chr2R_15125277_15130573,I_chr2R_15125940_15130208,I_chr2R_15129291_15129988 chr2R + chr2R_15128442_15128462 chr2R_15128441_15128442;chr2R_15128462_15128463 chr2R_15126294_15128441;chr2R_15128463_15129290 100.00 100.00 100.00 99.63 100.00 100.00 100.00 100.00 99.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.76 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.63 100.00 99.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG31370,CG31436 chr3R + chr3R_21128802_21128864 chr3R_21128801_21128802;chr3R_21128864_21128865 chr3R_21128205_21128801;chr3R_21128865_21129378 0.00 0.00 4.55 0.00 0.00 0.00 5.41 0.00 1.96 NA 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA NA 6.67 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 2.13 NA 0.00 NA NA NA 0.00 0.00 0.00 0.00 K jcn_only_AA Aut1,I_chr3L_18742839_18742896,RI_chr3L_18742839_18742911 chr3L + chr3L_18742839_18742892;chr3L_18742839_18742911 chr3L_18742839_18742896 chr3L_18742770_18742838;chr3L_18742912_18742977 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.99 1.28 0.00 0.00 0.00 0.00 0.87 1.45 0.00 0.00 0.00 0.00 0.00 0.00 1.57 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 1.15 0.00 0.00 0.68 0.44 K cassette CG12753,Pak3 chr3R - chr3R_12263061_12263786 chr3R_12263061_12263514;chr3R_12263722_12263786 chr3R_12263515_12263721 chr3R_12262658_12263060;chr3R_12263787_12264365 75.00 74.07 84.21 58.62 75.00 76.19 57.69 66.67 78.57 47.06 68.75 78.05 65.00 94.12 81.48 83.33 83.33 88.89 80.95 69.77 91.67 60.42 58.33 71.43 65.52 52.17 66.67 82.61 72.00 78.26 76.47 78.26 64.29 82.76 72.00 58.82 72.73 82.86 69.57 68.42 62.16 75.51 70.00 84.62 73.68 80.00 76.32 72.73 75.68 76.32 75.51 82.61 72.73 70.27 81.48 79.07 76.32 69.23 K jcn_only_AD I_chr2R_17169674_17170491,CG10069,I_chr2R_17169897_17170495,I_chr2R_17170432_17170491,I_chr2R_17171765_17171886 chr2R + chr2R_17170336_17170491;chr2R_17169885_17170491;chr2R_17170070_17170491;chr2R_17169897_17170491 chr2R_17170432_17170491 chr2R_17170492_17170591;chr2R_17169869_17169884 0.91 0.00 1.19 0.93 0.00 1.20 1.32 0.00 2.48 1.22 3.33 2.11 1.54 1.56 2.30 3.09 1.54 1.75 0.00 0.60 4.17 0.74 0.95 1.03 0.00 0.00 0.00 1.89 0.91 1.39 0.00 0.00 0.90 0.00 0.00 3.08 1.55 0.00 0.83 0.00 0.00 0.74 0.00 4.00 0.00 0.00 0.00 0.68 1.45 0.00 0.98 2.56 0.00 0.00 1.27 1.89 1.72 0.00 K intron_retention Taf10b,F_chr2L_2767950_2768071 chr2L - chr2L_2767950_2768068 chr2L_2767949_2767950;chr2L_2768068_2768069 chr2L_2767934_2767949;chr2L_2768069_2768166 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.04 100.00 100.00 99.04 100.00 100.00 100.00 100.00 97.44 98.00 100.00 100.00 98.11 100.00 98.15 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.00 100.00 98.63 97.94 100.00 100.00 100.00 100.00 98.90 98.99 100.00 98.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K jcn_only_AD CG42507,Trl,EI_chr3L_14750431_14750893,I_chr3L_14750431_14750985,CI_chr3L_14750431_14753667,I_chr3L_14754175_14754238 chr3L - chr3L_14750431_14750941;chr3L_14750431_14750762;chr3L_14750431_14750893;chr3L_14750431_14750583 chr3L_14750431_14751007 chr3L_14750331_14750430;chr3L_14751008_14751008 8.16 5.88 15.00 22.00 30.00 23.08 13.89 18.75 11.39 0.00 13.33 18.18 21.95 9.38 17.95 7.02 11.11 25.00 10.53 14.61 28.85 4.65 3.57 2.94 0.00 10.26 4.35 NA 10.64 4.35 2.70 12.90 6.38 16.18 0.00 2.04 2.44 0.00 0.00 10.53 8.00 11.84 20.59 8.33 9.09 5.88 0.00 7.02 14.29 3.64 2.70 0.00 6.82 0.00 13.33 2.27 0.00 2.56 K alternative_donor gish chr3R + chr3R_12100608_12100675;chr3R_12100598_12100675 chr3R_12100604_12100675 chr3R_12100676_12100891;chr3R_12100535_12100597 51.20 52.00 56.31 55.56 52.17 51.11 50.38 47.68 52.63 61.64 50.72 46.55 57.89 58.14 39.64 40.37 57.14 45.21 52.13 54.75 54.93 55.24 56.43 51.20 45.00 35.00 50.00 50.88 46.67 49.50 50.83 46.94 50.87 50.33 49.04 55.67 46.96 58.18 57.32 55.29 53.91 48.28 51.47 53.51 59.65 56.57 42.68 48.78 57.69 44.12 44.30 51.85 50.94 44.26 45.13 53.25 54.90 52.05 K intron_retention Doa,I_chr3R_24715823_24718923,I_chr3R_24747391_24747896 chr3R + chr3R_24747272_24747336 chr3R_24747271_24747272;chr3R_24747336_24747337 chr3R_24747081_24747271;chr3R_24747337_24747390 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 1.06 0.00 0.00 0.59 0.00 0.00 0.00 0.00 0.00 0.61 0.97 0.47 0.00 0.00 0.00 0.00 0.58 0.00 2.86 5.71 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.56 0.00 0.56 0.33 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 K jcn_only_AD Pect,I_chr2L_13207997_13208109 chr2L + chr2L_13204273_13208109 chr2L_13207997_13208109 chr2L_13208110_13208209;chr2L_13203768_13204272 0.68 0.47 0.35 1.67 0.72 0.50 0.18 0.99 1.22 0.40 1.09 0.67 3.01 1.36 1.36 0.78 0.70 1.71 1.45 1.19 0.22 1.88 0.85 0.69 1.04 0.43 0.21 0.00 0.36 0.16 1.49 0.41 0.25 1.09 0.26 0.63 0.96 0.68 0.16 0.51 0.19 0.32 1.67 0.56 0.33 0.36 0.56 0.00 1.47 1.19 1.06 1.42 0.00 1.92 1.25 0.00 0.82 0.00 K alternative_donor GstS1,I_chr2R_12981955_12982033,I_chr2R_12981964_12982021 chr2R - chr2R_12981964_12982033 chr2R_12981964_12982021 chr2R_12981864_12981963;chr2R_12982034_12982121 0.00 0.00 NA 14.29 NA NA 0.00 NA 3.85 0.00 0.00 4.76 NA NA 6.25 0.00 NA NA 0.00 3.45 NA 0.00 0.00 4.76 NA 0.00 NA 0.00 5.56 0.00 NA NA 0.00 7.14 NA NA 0.00 0.00 0.00 0.00 6.67 3.57 NA 0.00 0.00 9.52 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 5.88 0.00 NA 5.56 K intron_retention ftz-f1,I_chr3L_18765465_18765553,I_chr3L_18765465_18765559,CEI_chr3L_18765465_18790636,I_chr3L_18790575_18790636 chr3L - chr3L_18756963_18790636 chr3L_18756962_18756963;chr3L_18790636_18790637 chr3L_18756429_18756962;chr3L_18790637_18790736 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 11.76 0.00 0.00 0.00 0.00 0.00 13.21 4.00 0.00 0.00 0.00 0.00 0.00 10.71 6.90 0.00 NA 3.12 0.00 0.00 7.69 2.90 0.00 0.00 3.45 NA 4.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 5.56 NA NA 4.00 0.00 NA 0.00 K intron_retention eIF-1A chr3R + chr3R_14100479_14100588 chr3R_14100478_14100479;chr3R_14100588_14100589 chr3R_14100417_14100478;chr3R_14100589_14100702 0.93 1.47 0.34 0.60 0.93 0.99 0.56 0.56 0.53 1.24 0.96 0.70 0.61 0.00 0.00 0.45 0.36 0.57 0.98 0.54 0.75 2.82 1.02 1.40 1.67 1.50 0.73 2.22 3.33 2.22 0.47 1.92 0.00 1.01 0.00 0.98 1.78 0.63 0.00 1.57 0.00 0.48 0.39 2.74 0.00 3.02 0.93 3.51 0.36 0.74 1.35 2.21 1.66 1.75 1.11 0.74 1.06 6.06 K alternative_donor Pino,I_chr2L_1115944_1117443,I_chr2L_1116691_1116908,I_chr2L_1117918_1118565 chr2L - chr2L_1116691_1117443 chr2L_1116691_1116908 chr2L_1116591_1116690;chr2L_1117444_1117516 5.41 3.26 4.23 2.80 2.99 2.82 6.41 3.70 5.49 2.82 5.17 8.61 6.45 5.80 6.10 7.81 5.26 17.24 5.63 4.37 4.11 4.91 5.92 5.71 4.00 4.69 6.06 14.04 10.13 7.32 9.38 13.21 13.64 5.41 5.41 5.88 3.12 3.36 2.38 9.85 19.51 4.85 1.72 6.02 16.00 13.13 5.81 24.68 5.30 3.64 4.10 4.82 3.23 3.75 4.00 4.94 3.12 19.61 K multi_cassette LpR2 chr3R - chr3R_21527384_21539563 chr3R_21527384_21531652;chr3R_21531758_21532008;chr3R_21532208_21532537;chr3R_21533936_21535012;chr3R_21535240_21535746;chr3R_21535870_21539563 chr3R_21531653_21531757;chr3R_21532009_21532207;chr3R_21532538_21533935;chr3R_21535013_21535239;chr3R_21535747_21535869 chr3R_21527372_21527383;chr3R_21539564_21539578 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA 100.00 NA NA NA 100.00 NA NA NA 100.00 NA 100.00 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA NA NA NA 100.00 50.00 NA NA 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 100.00 K intron_retention rgr,I_chr2R_4488735_4489955 chr2R + chr2R_4488735_4495661 chr2R_4488734_4488735;chr2R_4495661_4495662 chr2R_4488635_4488734;chr2R_4495662_4495729 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 21.74 NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA 70.00 80.00 NA NA NA NA NA NA NA NA NA K jcn_only_AA Vha55 chr3R - chr3R_8453284_8453361 chr3R_8453298_8453361 chr3R_8453362_8453491;chr3R_8453171_8453283 95.93 96.48 95.15 95.65 95.97 94.53 92.09 95.00 93.54 98.56 95.87 96.01 96.33 96.14 95.88 97.60 95.12 97.65 97.30 95.65 98.06 97.53 95.24 95.71 97.22 96.91 96.82 93.27 96.36 98.43 97.72 93.22 93.85 93.79 96.99 95.21 95.29 95.00 92.19 93.89 98.14 94.86 95.93 95.04 96.15 97.55 96.60 94.39 95.54 100.00 95.41 96.68 98.37 96.64 97.08 94.37 92.68 96.94 K intron_retention SC35,I_chr2L_12432222_12432308 chr2L - chr2L_12433710_12433834 chr2L_12433709_12433710;chr2L_12433834_12433835 chr2L_12433579_12433709;chr2L_12433835_12434027 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045275_16046104;chr3L_16045275_16045854 chr3L_16045275_16046111 chr3L_16045255_16045274;chr3L_16046112_16046204 10.42 10.00 22.22 20.00 NA 4.55 14.29 5.88 12.70 NA 8.33 10.42 6.45 6.90 25.00 8.33 10.71 17.86 3.33 18.18 4.35 NA 7.41 5.00 NA 19.44 NA NA 3.70 NA 16.67 NA 12.50 16.00 NA 15.38 23.81 NA NA 4.00 NA 10.42 14.29 22.73 NA 10.00 NA 14.29 6.12 NA NA NA NA NA 8.11 NA NA NA K intron_retention CtBP chr3R + chr3R_8847365_8850545 chr3R_8847364_8847365;chr3R_8850545_8850546 chr3R_8847142_8847364;chr3R_8850546_8850586 90.45 93.33 84.62 95.65 84.62 87.50 93.33 95.65 91.67 83.33 80.95 80.00 93.75 93.75 78.95 87.50 90.91 92.31 93.33 83.33 86.67 91.30 92.00 76.19 90.00 94.12 92.86 85.00 78.26 100.00 95.24 91.67 96.15 94.44 72.73 92.31 66.67 94.44 85.71 87.50 92.31 83.87 92.31 81.82 75.00 94.74 80.00 83.33 80.56 82.61 91.67 92.31 88.89 NA 94.74 100.00 85.71 68.42 K alternative_donor Hsc70-3,I_chrX_11699076_11699138,I_chrX_11699076_11699158,I_chrX_11699076_11699260,EI_chrX_11699076_11699573,I_chrX_11699076_11700062 chrX - chrX_11699076_11700276 chrX_11699076_11700110 chrX_11698976_11699075;chrX_11700277_11700394 0.98 1.27 0.00 0.64 0.60 0.98 0.82 0.55 0.38 1.79 0.69 0.94 0.31 1.06 1.12 0.27 0.60 0.67 0.47 0.88 0.82 1.82 1.32 1.35 1.48 1.81 1.32 3.68 4.35 1.11 0.58 0.00 1.00 0.65 2.47 3.10 1.73 0.00 0.61 2.05 1.96 1.28 1.85 2.67 1.72 2.27 1.27 0.00 1.10 0.55 1.80 0.93 0.94 0.00 0.52 0.98 0.87 0.66 K alternative_donor Tom20,I_chr3L_19994387_19994460,RI_chr3L_19994894_19994949,RI_chr3L_19995983_19996407 chr3L + chr3L_19994391_19994460 chr3L_19994397_19994460 chr3L_19994461_19994529;chr3L_19994328_19994390 99.29 98.82 98.95 99.29 96.72 100.00 100.00 99.35 100.00 100.00 100.00 99.47 98.67 100.00 100.00 99.08 100.00 98.44 100.00 99.43 100.00 100.00 98.31 98.10 98.21 100.00 100.00 96.43 100.00 98.21 98.85 100.00 100.00 99.28 100.00 98.41 98.61 98.75 98.91 97.98 97.96 99.47 100.00 98.73 100.00 99.12 100.00 98.36 98.46 99.16 99.01 100.00 100.00 98.94 100.00 100.00 97.67 98.11 K intron_retention I_chr2R_7778750_7781059,I_chr2R_7778971_7781059,Ef1alpha48D,I_chr2R_7779690_7780997,I_chr2R_7779690_7781065,I_chr2R_7779690_7783075,I_chr2R_7779719_7781059,I_chr2R_7779813_7781059,I_chr2R_7779892_7781059,EF_chr2R_7779896_7781065,I_chr2R_7780542_7781059,I_chr2R_7780580_7781059,I_chr2R_7780840_7781059,I_chr2R_7780877_7781059,RI_chr2R_7781135_7783075 chr2R + chr2R_7780840_7781059 chr2R_7780839_7780840;chr2R_7781059_7781060 chr2R_7780777_7780839;chr2R_7781060_7781097 100.00 95.45 92.86 100.00 88.89 100.00 96.43 100.00 97.44 100.00 92.86 100.00 NA 100.00 91.67 100.00 92.31 100.00 93.33 100.00 91.67 100.00 92.11 92.59 100.00 100.00 98.33 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 94.44 100.00 94.44 100.00 96.77 100.00 96.43 100.00 94.74 100.00 100.00 95.83 100.00 96.43 100.00 100.00 100.00 96.15 94.44 100.00 95.45 96.77 100.00 K jcn_only_AA Nop60B,RI_chr2R_20063248_20063455,I_chr2R_20063248_20063949,F_chr2R_20073291_20073744 chr2R + chr2R_20063248_20063455 chr2R_20063248_20063439 chr2R_20063148_20063247;chr2R_20063456_20063555 98.82 98.61 97.14 98.82 97.99 98.12 99.16 99.28 97.53 99.16 97.70 98.71 99.28 98.80 99.20 98.90 99.30 96.80 98.63 98.33 97.39 99.78 98.60 98.93 99.63 98.73 99.22 100.00 98.94 98.45 86.91 98.74 99.53 98.68 97.90 99.16 98.89 99.21 99.19 99.07 98.47 97.94 99.22 98.99 96.92 98.78 99.29 99.15 98.38 99.31 98.93 98.86 98.93 98.86 98.62 98.52 98.34 98.64 K mutually_exclusive CG3114,RI_chrX_168562_168685 chrX - chrX_165647_166589,chrX_166917_167215 chrX_165647_165834,chrX_165909_167215 chrX_166590_166916 chrX_165835_165908 chrX_165521_165646;chrX_167216_167420 14.29 0.00 22.22 33.33 0.00 16.67 NA 0.00 11.76 22.22 NA 16.67 NA 33.33 0.00 7.69 25.00 0.00 16.67 5.56 0.00 9.09 21.43 0.00 40.00 0.00 22.22 0.00 16.67 0.00 22.22 14.29 8.70 0.00 16.67 14.29 7.14 20.00 20.00 12.50 NA 11.76 0.00 11.11 25.00 0.00 0.00 6.67 14.29 25.00 22.22 33.33 28.57 25.00 12.50 33.33 14.29 16.67 K alternative_donor Scamp,I_chrX_15342614_15342891,I_chrX_15343542_15343655 chrX - chrX_15342614_15343313 chrX_15342614_15342891 chrX_15342514_15342613;chrX_15343314_15343541 2.48 1.23 1.52 4.84 2.17 4.44 3.92 4.69 2.48 1.27 4.00 3.51 2.94 5.00 5.00 7.89 2.94 1.64 2.70 1.99 4.08 1.97 0.81 1.69 1.14 1.79 3.49 3.45 5.06 1.35 3.70 2.33 2.99 4.21 1.30 2.15 1.61 1.68 1.53 2.17 1.96 2.70 2.86 1.49 2.44 3.00 1.20 1.75 2.80 1.43 3.81 3.23 1.11 2.44 3.45 1.39 3.41 3.08 K intron_retention app,RI_chr3L_12201038_12201989,I_chr3L_12259361_12259754 chr3L - chr3L_12208903_12209518 chr3L_12208902_12208903;chr3L_12209518_12209519 chr3L_12208718_12208902;chr3L_12209519_12209679 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 10.53 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG30007 chr2R + chr2R_5782991_5783050 chr2R_5782990_5782991;chr2R_5783050_5783051 chr2R_5782763_5782990;chr2R_5783051_5783609 4.76 NA NA 30.77 NA NA 0.00 0.00 15.15 NA NA NA NA NA NA 6.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention CG31619,I_chr2L_21725446_21728027 chr2L + chr2L_21719644_21725067 chr2L_21719643_21719644;chr2L_21725067_21725068 chr2L_21719514_21719643;chr2L_21725068_21725445 6.67 5.77 4.00 15.58 0.00 13.64 15.38 12.90 8.86 5.56 NA 8.43 NA 12.77 12.50 6.15 9.43 7.69 15.38 12.70 NA 21.05 8.47 8.47 15.38 13.04 10.20 NA 4.35 2.13 6.67 2.56 3.37 11.25 8.00 0.00 3.77 8.51 10.00 4.60 6.90 6.48 11.11 0.00 1.85 1.32 2.38 4.88 4.55 0.00 5.80 10.00 3.70 0.00 12.90 6.67 4.88 1.82 K jcn_only_AD PPP4R2r chrX + chrX_10373003_10373505 chrX_10373054_10373505 chrX_10373506_10373750;chrX_10372866_10373002 0.73 NA 3.45 6.52 NA NA 6.06 0.00 3.92 NA NA 4.76 4.55 0.00 NA 1.47 0.00 NA 0.00 2.27 0.00 0.00 0.00 NA NA 4.00 NA NA NA NA 0.00 NA 4.35 0.00 4.55 NA NA NA NA NA NA 2.33 0.00 NA NA 0.00 NA NA 3.08 NA 0.00 NA NA NA 0.00 NA NA NA K cassette Aldh-III,I_chr2R_3356541_3356614,RI_chr2R_3357578_3357636,I_chr2R_3361118_3361226,I_chr2R_3361349_3361499 chr2R - chr2R_3355332_3356864 chr2R_3355332_3356614;chr2R_3356731_3356864 chr2R_3356615_3356730 chr2R_3355296_3355331;chr2R_3356865_3357018 93.75 92.59 92.50 88.89 100.00 96.30 100.00 95.35 96.15 58.33 100.00 96.97 88.89 96.15 96.00 97.78 100.00 100.00 90.62 98.82 91.67 96.00 93.75 88.89 100.00 96.77 90.91 87.50 93.75 94.44 85.71 92.31 93.75 100.00 93.33 83.33 91.67 92.86 94.59 90.00 96.77 95.35 92.86 100.00 92.86 89.74 92.00 81.25 97.37 90.48 93.10 89.47 93.33 93.33 100.00 96.55 94.44 92.31 K jcn_only_AA Mbs,I_chr3L_16045251_16046108,RI_chr3L_16045275_16045854,RI_chr3L_16045275_16046111,RI_chr3L_16045277_16046104,I_chr3L_16045316_16046104,I_chr3L_16057100_16057329 chr3L + chr3L_16045251_16046104;chr3L_16045251_16046129;chr3L_16045251_16045854;chr3L_16045251_16046111 chr3L_16045251_16046108 chr3L_16045216_16045250;chr3L_16046130_16046204 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 2.70 0.00 0.00 3.08 0.00 0.00 2.15 0.00 0.00 0.00 0.78 3.85 0.00 0.00 0.00 0.00 0.00 5.97 0.00 1.72 1.16 0.00 0.00 2.04 0.83 0.00 1.89 2.50 0.00 0.00 0.00 0.00 0.88 0.00 1.82 0.00 0.00 3.23 0.82 1.87 0.00 0.00 0.00 0.00 NA 6.41 3.03 0.00 0.00 K intron_retention Pop2,RI_chr3L_11992097_11993849 chr3L - chr3L_11991936_11991993 chr3L_11991935_11991936;chr3L_11991993_11991994 chr3L_11991870_11991935;chr3L_11991994_11992096 100.00 100.00 100.00 100.00 99.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.50 100.00 100.00 100.00 99.69 100.00 100.00 100.00 99.58 100.00 99.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.62 100.00 100.00 K alternative_acceptor CG14414,I_chrX_14474880_14474927 chrX + chrX_14474880_14474997 chrX_14474880_14474951 chrX_14474780_14474879;chrX_14474998_14475027 73.08 77.78 87.50 81.48 94.12 78.95 83.33 69.23 75.76 72.73 75.00 70.73 84.62 80.00 84.00 90.48 93.75 86.67 93.75 78.26 76.47 67.74 66.67 60.42 66.67 100.00 75.68 50.00 70.27 72.97 50.00 63.83 71.88 84.62 73.08 77.14 58.82 52.00 70.83 69.81 75.38 72.50 85.71 64.00 65.62 66.67 70.73 61.43 72.09 74.07 78.12 63.16 66.67 73.17 90.48 62.79 82.98 55.56 K alternative_donor None chrU + chrU_1178980_1183262;chrU_1179335_1183262 chrU_1182323_1183262 5.44 6.40 4.83 9.09 5.49 4.72 8.97 6.96 6.94 5.00 5.63 6.06 10.14 7.59 5.44 6.22 4.86 6.06 5.00 5.86 5.43 6.56 6.38 5.56 5.13 2.68 4.86 11.36 2.33 8.89 4.29 4.23 5.80 5.86 7.06 5.38 5.26 7.32 3.81 4.98 2.74 5.73 8.46 3.08 2.86 5.07 3.25 9.52 6.73 3.49 6.80 6.14 2.50 3.53 4.47 3.57 2.67 4.08 K cassette Strn-Mlck,I_chr2R_11838019_11838662 chr2R - chr2R_11835112_11836312 chr2R_11835112_11835668;chr2R_11836216_11836312 chr2R_11835669_11836215 chr2R_11834432_11835111;chr2R_11836313_11836490 96.03 96.32 96.03 92.34 96.72 94.74 98.12 93.41 96.20 94.17 92.71 96.46 92.59 97.20 97.24 97.24 96.15 97.52 97.74 93.69 98.25 96.34 95.04 94.67 94.78 95.56 95.81 98.72 96.97 97.84 92.41 96.58 97.08 94.74 96.83 96.18 96.70 94.94 94.50 95.91 95.80 95.21 95.92 96.60 93.49 95.91 97.87 96.36 95.74 98.16 95.87 98.28 94.74 93.06 99.31 92.86 96.24 95.45 K alternative_last_exon Ank,RI_chr4_144049_144406,I_chr4_150069_150423 chr4 - chr4_137257_137445;chr4_136631_137445 chr4_137345_137445 chr4_136944_137256;chr4_136213_136630 chr4_137276_137344 chr4_137446_139127 0.00 0.00 0.00 20.00 0.00 0.00 10.53 4.00 5.00 0.00 0.00 0.00 NA 0.00 0.00 4.17 0.00 0.00 0.00 8.33 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 10.00 0.00 0.00 9.09 0.00 0.00 5.88 0.00 0.00 0.00 0.00 NA 0.00 0.00 11.11 0.00 K intron_retention mus205 chr2R + chr2R_3683384_3683440 chr2R_3683383_3683384;chr2R_3683440_3683441 chr2R_3682979_3683383;chr2R_3683441_3683525 0.00 NA NA NA NA NA 5.88 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention msn,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2562844_2563817 chr3L_2562843_2562844;chr3L_2563817_2563818 chr3L_2562775_2562843;chr3L_2563818_2563917 6.98 7.41 9.23 12.12 12.77 12.28 9.09 17.39 6.75 3.23 14.29 7.77 23.08 11.36 11.67 8.20 16.67 8.33 13.04 10.69 15.22 7.38 3.68 2.05 5.88 9.26 6.98 12.50 4.35 7.37 10.45 0.00 4.26 8.54 3.10 0.00 1.97 3.88 2.01 9.01 2.94 5.38 15.79 7.69 3.90 3.64 0.00 6.49 6.42 3.57 3.76 4.76 3.75 1.72 11.48 1.32 3.08 5.45 K jcn_only_AA CG8486,I_chr2L_8182451_8183191 chr2L + chr2L_8177074_8177129 chr2L_8177074_8177120 chr2L_8176876_8177073;chr2L_8177130_8177689 0.45 0.00 0.74 1.04 0.45 0.00 1.29 0.00 0.63 0.89 0.00 0.22 0.00 0.45 0.00 0.00 0.79 0.48 0.37 0.00 0.46 1.38 0.29 0.00 1.44 0.00 0.00 3.28 0.83 0.57 1.31 0.00 0.00 0.91 2.68 2.31 0.29 0.81 1.15 0.56 0.00 0.61 1.01 0.31 2.08 0.00 1.11 0.00 0.90 1.63 0.95 0.00 0.00 0.00 1.02 0.00 0.00 0.00 K intron_retention Pop2,I_chr3L_11992097_11992343,RI_chr3L_11992097_11993849 chr3L - chr3L_11992097_11993372 chr3L_11992096_11992097;chr3L_11993372_11993373 chr3L_11991997_11992096;chr3L_11993373_11993790 1.80 1.88 1.98 4.32 1.74 0.00 0.00 2.92 3.61 2.80 0.00 1.66 2.60 0.00 1.10 2.35 2.82 0.00 0.00 2.66 2.30 3.17 0.93 0.47 0.00 1.63 0.44 5.48 2.26 2.23 2.56 0.00 1.90 1.43 1.83 1.54 3.32 1.61 2.11 3.60 0.00 2.02 1.64 2.70 1.97 2.23 1.32 0.44 2.33 2.58 4.38 1.52 0.00 0.79 1.80 1.20 0.00 0.95 K mutually_exclusive ens,I_chr3L_4130719_4131120 chr3L - chr3L_4127163_4128307,chr3L_4128974_4131120;chr3L_4127163_4130388,chr3L_4130644_4131120 chr3L_4127163_4129650,chr3L_4129792_4131120 chr3L_4128308_4128973;chr3L_4130389_4130643 chr3L_4129651_4129791 chr3L_4126989_4127162;chr3L_4131121_4131220 97.92 98.06 97.78 98.56 98.77 98.92 97.94 98.47 98.90 97.26 97.65 98.66 98.63 97.56 97.85 96.72 97.73 98.33 98.77 98.74 97.26 98.71 98.09 97.56 97.98 98.90 97.54 96.88 97.03 98.26 98.23 95.16 97.74 97.95 97.06 96.83 98.88 97.64 97.92 98.96 93.98 98.48 95.89 97.81 96.74 96.55 97.53 97.95 98.59 98.21 98.69 97.89 97.06 98.18 98.04 97.59 97.83 96.05 K intron_retention yellow-f,yellow-f2 chr3R - chr3R_8818122_8818187 chr3R_8818121_8818122;chr3R_8818187_8818188 chr3R_8818042_8818121;chr3R_8818188_8818255 0.00 0.00 0.00 0.52 0.00 0.00 0.46 0.00 0.22 0.00 0.00 0.32 0.38 0.56 0.00 0.42 0.00 0.00 0.00 0.25 0.00 0.44 0.18 0.00 0.46 0.00 0.70 0.75 0.00 0.00 0.00 0.00 0.28 0.00 0.00 1.67 0.00 0.00 0.23 0.00 0.00 0.26 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.63 0.00 K alternative_acceptor sina chr3L + chr3L_16847626_16849400 chr3L_16847626_16849396 chr3L_16847120_16847625;chr3L_16849401_16851819 100.00 95.24 100.00 93.75 100.00 93.33 100.00 96.00 100.00 100.00 100.00 96.00 100.00 94.12 100.00 100.00 90.91 94.12 100.00 100.00 100.00 100.00 95.83 100.00 100.00 94.44 100.00 100.00 100.00 96.43 100.00 100.00 95.12 100.00 100.00 100.00 100.00 94.74 100.00 98.33 100.00 93.55 90.91 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 95.45 92.31 100.00 100.00 100.00 100.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2814174;chr2R_2814327_2816013;chr2R_2816342_2816577;chr2R_2816779_2817327;chr2R_2817604_2817753 chr2R_2814175_2814326;chr2R_2816014_2816341;chr2R_2816578_2816778;chr2R_2817328_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG30193,CG30190,noncoding_8782 chr2R + chr2R_18817843_18819037 chr2R_18817842_18817843;chr2R_18819037_18819038 chr2R_18817716_18817842;chr2R_18819038_18819238 2.78 5.08 0.00 0.00 0.00 4.26 9.52 1.41 4.81 0.00 0.00 2.38 5.00 2.38 4.26 0.00 0.00 0.00 0.00 2.68 2.13 12.96 1.27 0.00 0.00 0.00 5.00 0.00 6.90 1.92 3.12 6.25 10.20 5.71 0.00 6.67 4.62 0.00 0.00 4.05 7.14 5.26 0.00 5.77 5.00 5.56 2.78 9.43 4.40 4.55 2.90 0.00 2.22 4.17 4.11 0.00 2.60 8.47 K intron_retention Su(var)205,RI_chr2L_8210643_8210729,RI_chr2L_8212717_8212766 chr2L - chr2L_8210474_8210549 chr2L_8210473_8210474;chr2L_8210549_8210550 chr2L_8210353_8210473;chr2L_8210550_8210642 0.46 0.49 0.49 0.83 0.97 0.87 0.62 0.92 0.62 0.00 0.27 0.65 0.40 0.35 0.94 1.20 0.39 0.24 0.92 0.62 0.00 0.00 0.19 0.00 0.96 1.11 2.05 2.89 1.17 0.43 0.38 0.46 0.31 0.87 0.00 0.89 0.48 0.27 0.92 0.24 1.17 0.15 0.00 0.36 0.48 0.34 0.37 0.12 1.22 0.89 1.08 0.00 0.16 0.17 0.98 0.36 0.19 0.14 K intron_retention CG32138 chr3L + chr3L_14058259_14058688 chr3L_14058258_14058259;chr3L_14058688_14058689 chr3L_14058172_14058258;chr3L_14058689_14058715 20.00 NA NA 14.81 NA NA 44.44 0.00 17.50 NA NA 27.27 21.43 30.77 NA 22.22 30.77 NA 25.00 33.33 14.29 18.18 18.75 16.67 21.05 25.00 21.43 NA 10.53 21.05 18.75 NA 20.00 18.75 18.75 10.81 14.29 10.53 7.14 21.43 NA 23.08 16.67 23.08 NA NA 20.00 30.77 22.22 0.00 13.64 NA NA NA 26.32 14.29 NA NA K intron_retention CG14995,I_chr3L_4095875_4097205,I_chr3L_4096047_4096903 chr3L - chr3L_4098200_4100779 chr3L_4098199_4098200;chr3L_4100779_4100780 chr3L_4098026_4098199;chr3L_4100780_4100845 2.90 NA NA 12.50 0.00 NA 0.00 8.00 9.09 NA NA 19.23 10.00 NA NA 12.50 7.69 6.67 0.00 0.00 NA 2.94 0.00 12.50 0.00 14.29 5.00 0.00 0.00 0.00 0.00 NA 6.90 9.09 5.56 NA 20.00 0.00 0.00 2.86 9.09 12.50 NA 3.57 0.00 0.00 0.00 12.50 6.67 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 K alternative_donor Pten,I_chr2L_10256507_10256803,F_chr2L_10259663_10260253 chr2L - chr2L_10260585_10260729;chr2L_10260585_10260741 chr2L_10260585_10260853 chr2L_10260254_10260584;chr2L_10260854_10260860 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 5.56 0.00 0.00 NA 0.00 NA NA 0.00 5.00 NA 16.67 0.00 16.67 0.00 NA NA NA 0.00 10.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 14.29 NA NA 0.00 NA NA 0.00 K cassette loqs chr2L + chr2L_13384023_13384983;chr2L_13384023_13384986 chr2L_13384023_13384526;chr2L_13384795_13384983,chr2L_13384795_13384986 chr2L_13384527_13384794 chr2L_13383737_13384022;chr2L_13384987_13385674 77.78 NA NA NA NA NA NA 71.43 77.78 NA NA NA NA NA NA 75.00 NA NA NA 80.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 66.67 NA NA 66.67 60.00 NA 83.33 NA 85.71 NA 50.00 NA 83.33 NA NA 80.00 NA 75.00 NA NA NA 80.00 NA NA NA K alternative_acceptor Usp7,I_chrX_11922059_11922456 chrX - chrX_11922059_11922456 chrX_11922073_11922456 chrX_11922457_11922556;chrX_11921983_11922058 100.00 100.00 100.00 96.97 100.00 100.00 96.55 100.00 97.92 100.00 91.67 100.00 100.00 95.00 100.00 100.00 95.45 93.75 100.00 100.00 100.00 100.00 96.30 95.83 92.31 93.33 94.12 62.50 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 93.75 91.67 100.00 100.00 100.00 93.33 95.45 100.00 100.00 90.91 100.00 96.43 100.00 96.15 100.00 NA NA 100.00 100.00 100.00 NA K jcn_only_AD Gug,R_chr3L_8444636_8444874,I_chr3L_8455244_8456103 chr3L + chr3L_8462783_8463187 chr3L_8462792_8463187 chr3L_8463188_8463199;chr3L_8462665_8462782 64.11 NA NA 58.62 NA NA NA NA NA NA NA 61.54 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA 68.18 NA NA NA NA NA NA NA NA NA NA K jcn_only_AD CG1358,I_chr2R_3485171_3489936,CEF_chr2R_3495963_3501113 chr2R - chr2R_3493750_3501965 chr2R_3493750_3501438 chr2R_3493449_3493749;chr2R_3501966_3502037 92.43 NA 93.10 NA 90.91 NA NA 90.00 91.67 81.82 NA 85.71 NA 96.88 92.00 94.44 NA NA NA 91.18 NA NA 92.86 NA NA NA NA NA NA NA 91.18 NA NA 90.48 NA NA 72.73 95.45 NA 97.87 95.24 85.00 NA 96.30 NA 100.00 NA 100.00 100.00 NA 88.00 NA 100.00 NA 100.00 NA NA 89.66 N jcn_only_AD myoglianin,RI_chr4_712986_714006,E_chr4_716066_716347,RI_chr4_716066_716482,RI_chr4_716153_716613,E_chr4_716172_716351 chr4 - chr4_715043_716322;chr4_715043_716708;chr4_715043_716613;chr4_715043_715839 chr4_715043_716482 chr4_714007_715042;chr4_716709_716712 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 24.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K intron_retention CG14425,Sxl,CG14425_Sxl,CEFI_chrX_6981717_6984166,CEF_chrX_6984538_6992033 chrX - chrX_6981693_6982610 chrX_6981692_6981693;chrX_6982610_6982611 chrX_6981647_6981692;chrX_6982611_6982782 3.92 NA NA 3.23 NA 6.25 20.00 3.57 0.00 NA NA 12.00 6.67 7.69 0.00 NA NA NA NA 0.00 NA 8.89 5.71 0.00 0.00 NA 0.00 0.00 NA 0.00 5.13 NA 5.26 8.33 0.00 0.00 NA 0.00 3.23 4.26 NA 0.00 14.29 5.26 NA 0.00 11.76 NA 16.13 0.00 7.69 15.00 NA NA 0.00 5.00 NA NA K intron_retention CG11015,I_chr2L_6557983_6558417,I_chr2L_6557984_6558417 chr2L + chr2L_6557985_6558417 chr2L_6557984_6557985;chr2L_6558417_6558418 chr2L_6557965_6557984;chr2L_6558418_6558517 0.73 0.73 0.00 0.25 0.00 0.43 1.33 0.21 0.21 0.00 0.00 1.18 0.00 0.00 0.18 0.00 0.90 0.63 0.00 0.26 0.98 4.59 1.08 0.92 0.00 0.52 1.20 1.59 0.00 0.90 1.14 1.27 0.96 0.87 0.41 1.57 0.78 0.45 1.03 0.81 0.79 0.78 0.00 0.91 0.98 0.67 0.30 0.40 0.92 1.59 1.08 0.00 0.80 0.45 1.08 0.90 0.48 0.63 K intron_retention Hrb98DE,RI_chr3R_24429041_24431183,snoRNA:Psi28S-3305c,RI_chr3R_24430202_24430258 chr3R + chr3R_24429041_24429329 chr3R_24429040_24429041;chr3R_24429329_24429330 chr3R_24428941_24429040;chr3R_24429330_24429420 0.57 0.00 0.88 1.02 0.41 0.00 0.73 0.57 0.28 1.07 0.00 2.19 2.24 1.77 0.22 0.45 0.40 0.00 0.64 0.51 0.00 0.36 0.96 0.78 1.45 0.00 0.93 1.92 0.85 0.58 0.32 0.10 0.47 0.00 0.65 1.42 1.19 1.13 0.67 0.70 0.19 0.48 0.00 1.09 0.09 0.33 0.77 0.46 0.64 0.62 0.35 0.58 1.18 0.57 0.23 0.00 0.44 0.55 K intron_retention CG7720 chr3R - chr3R_14586366_14586420 chr3R_14586365_14586366;chr3R_14586420_14586421 chr3R_14585987_14586365;chr3R_14586421_14586627 42.56 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA 66.67 NA NA NA 38.46 NA 12.50 21.43 NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 46.67 NA NA NA NA NA NA NA NA NA K alternative_last_exon CG31120,I_chr3R_20743232_20743287 chr3R - chr3R_20741458_20743430 chr3R_20743232_20743430 chr3R_20741367_20741457 chr3R_20741559_20743231 chr3R_20743431_20743491 73.33 76.74 71.79 60.00 69.70 64.71 62.79 61.29 70.89 76.47 77.42 66.20 63.33 66.67 72.00 72.00 69.23 69.23 68.29 78.16 74.19 68.57 77.59 82.35 73.33 65.85 71.11 78.12 89.47 81.82 69.44 76.32 88.89 65.45 75.86 65.62 88.89 80.00 86.89 73.13 70.97 71.95 68.75 75.00 75.00 82.35 79.55 73.68 66.20 70.00 73.33 85.19 80.95 87.50 75.00 79.07 72.55 74.55 K intron_retention CG17002 chr2R + chr2R_2875194_2875285 chr2R_2875193_2875194;chr2R_2875285_2875286 chr2R_2875175_2875193;chr2R_2875286_2875770 3.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.41 NA NA NA NA NA NA 25.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA 12.50 NA NA NA NA NA NA NA NA NA NA K intron_retention Ady43A chr2R - chr2R_3132649_3132726 chr2R_3132648_3132649;chr2R_3132726_3132727 chr2R_3132493_3132648;chr2R_3132727_3133263 0.00 NA NA 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 5.26 NA 0.00 NA NA NA 5.71 5.88 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 5.56 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA NA NA NA NA NA 0.00 K alternative_donor Dp,I_chr2R_9111166_9112971,REI_chr2R_9113257_9113316 chr2R + chr2R_9112646_9112971;chr2R_9112663_9112971 chr2R_9112640_9112971 chr2R_9112972_9113071;chr2R_9112620_9112639 6.25 0.00 0.00 6.67 NA 16.67 NA NA 5.56 NA NA 0.00 NA NA 14.29 8.33 NA 0.00 NA 7.14 NA 0.00 10.00 5.88 0.00 0.00 5.88 10.00 NA 12.50 7.69 NA NA 0.00 NA NA 6.25 NA 0.00 0.00 14.29 7.14 NA 6.67 NA 0.00 0.00 NA 7.14 0.00 NA NA NA 16.67 NA NA 13.33 11.11 K intron_retention Ets97D chr3R - chr3R_22738166_22738226 chr3R_22738165_22738166;chr3R_22738226_22738227 chr3R_22738096_22738165;chr3R_22738227_22738341 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.80 0.00 0.00 0.00 0.00 0.00 6.00 1.47 0.00 10.53 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CHOp24,CG3568 chrX + chrX_4435585_4435939 chrX_4435584_4435585;chrX_4435939_4435940 chrX_4435250_4435584;chrX_4435940_4436596 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA Smr,I_chrX_12625852_12636351,REI_chrX_12635675_12636351 chrX - chrX_12635675_12636351;chrX_12625852_12636351;chrX_12635693_12636351 chrX_12625938_12636351 chrX_12636352_12636441 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 1.85 NA 0.00 0.00 0.00 NA NA NA NA 0.00 NA 1.59 0.00 0.00 NA 0.00 NA 0.00 0.00 NA 4.76 0.00 NA NA 0.00 NA NA 0.00 K intron_retention CG42574,I_chr3R_621543_625413,I_chr3R_621546_625413 chr3R - chr3R_623420_625413 chr3R_623419_623420;chr3R_625413_625414 chr3R_623353_623419;chr3R_625414_625513 8.33 14.29 14.29 11.76 NA 0.00 25.93 14.29 16.67 6.45 NA 10.20 NA NA 13.04 13.16 0.00 NA 14.29 5.88 NA 7.96 8.33 5.26 7.41 0.00 5.88 20.51 2.90 8.51 5.26 NA 6.67 9.68 10.53 10.87 8.33 0.00 0.00 10.61 4.76 13.89 NA 9.52 0.00 0.00 NA 5.62 11.11 NA 7.69 14.29 0.00 NA 16.67 NA NA 3.23 K intron_retention dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21308939_21309945 chr2L_21308938_21308939;chr2L_21309945_21309946 chr2L_21308288_21308938;chr2L_21309946_21309974 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_last_exon CG32000,I_chr4_154340_157504,I_chr4_154551_155461,I_chr4_157794_157864 chr4 + chr4_159201_160447;chr4_159201_160895 chr4_159201_159572 chr4_160448_160716;chr4_160896_162753 chr4_159573_159641 chr4_159000_159200 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD lqfR,I_chr3R_18240000_18243534,I_chr3R_18243588_18243830 chr3R + chr3R_18240000_18243830 chr3R_18243588_18243830 chr3R_18243831_18243930;chr3R_18239900_18239999 3.33 0.00 5.00 2.33 6.90 3.23 0.00 0.00 0.00 NA 8.11 3.57 NA NA 3.70 4.00 5.00 13.04 5.00 2.94 0.00 11.63 2.86 5.00 2.56 0.00 4.55 0.00 4.17 2.94 6.45 3.33 4.76 2.50 3.03 0.00 7.14 2.22 1.54 5.36 0.00 1.89 NA 0.00 9.09 0.00 4.35 4.17 0.00 5.56 1.89 6.25 0.00 3.85 0.00 9.09 3.70 3.85 K intron_retention CG32473 chr3R + chr3R_9137618_9137674 chr3R_9137617_9137618;chr3R_9137674_9137675 chr3R_9137126_9137617;chr3R_9137675_9137772 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.98 NA 0.00 0.00 0.00 5.56 0.00 0.00 NA 6.67 0.00 0.00 NA 0.00 2.86 0.00 0.00 NA 0.00 0.00 0.00 4.00 NA NA 0.00 0.00 0.00 5.56 0.00 NA 0.00 0.00 0.00 0.00 12.50 NA 0.00 0.00 0.00 0.00 3.57 7.69 0.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG7458 chr3L + chr3L_21948960_21949479 chr3L_21948986_21949479 chr3L_21949480_21949583;chr3L_21948713_21948959 6.62 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.56 K intron_retention HDAC4,F_chrX_13159070_13159174,I_chrX_13170581_13179235,I_chrX_13178996_13179235 chrX - chrX_13162296_13162726 chrX_13162295_13162296;chrX_13162726_13162727 chrX_13161355_13162295;chrX_13162727_13162873 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 8.62 0.00 0.00 0.62 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 1.37 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AA EF_chr2R_8548702_8595112,nemy chr2R - chr2R_8563548_8563629;chr2R_8560845_8563629;chr2R_8561431_8563629 chr2R_8561434_8563629 chr2R_8563630_8563736 0.00 0.93 1.64 0.00 0.00 0.00 0.00 0.71 0.50 1.67 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 1.04 1.08 0.00 0.00 0.00 1.55 0.00 2.78 0.00 1.52 0.00 0.00 1.47 0.00 0.00 0.00 2.24 0.61 0.00 0.00 0.00 0.00 0.00 0.00 1.94 1.47 0.00 0.56 0.00 0.48 1.08 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD kat80,I_chrX_16162233_16162306,I_chrX_16168725_16169287 chrX - chrX_16168725_16169347;chrX_16168725_16169287 chrX_16168725_16169565 chrX_16168625_16168724;chrX_16169566_16169786 92.96 91.67 93.18 94.20 96.97 90.91 93.33 94.74 93.68 100.00 97.06 93.15 86.36 90.24 88.10 96.92 91.89 94.59 90.00 92.77 92.31 90.00 93.75 98.04 91.67 94.44 100.00 96.88 100.00 92.68 78.79 NA NA 88.37 90.00 94.44 100.00 100.00 89.66 78.33 NA 87.18 88.00 85.11 NA 92.59 82.86 69.57 80.77 89.36 94.51 97.37 100.00 90.00 96.30 96.43 94.59 NA K intron_retention Doa,I_chr3R_24715823_24718923,I_chr3R_24747391_24747896 chr3R + chr3R_24720785_24726545 chr3R_24720784_24720785;chr3R_24726545_24726546 chr3R_24720759_24720784;chr3R_24726546_24726744 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 2.80 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 K jcn_only_AA 14-3-3zeta,I_chr2R_5987356_5991764,I_chr2R_5987603_5991760,I_chr2R_5988662_5991760,I_chr2R_5988666_5991760,I_chr2R_5988919_5991760,I_chr2R_5988931_5991760,I_chr2R_5990647_5991760,I_chr2R_5991249_5991760,I_chr2R_5991689_5991760,I_chr2R_5993610_5993957,I_chr2R_5993331_5994971 chr2R + chr2R_5987244_5991764 chr2R_5987244_5991760 chr2R_5987238_5987243;chr2R_5991765_5991860 100.00 100.00 100.00 99.39 100.00 99.26 99.49 99.73 100.00 100.00 99.15 99.42 100.00 100.00 100.00 100.00 100.00 99.49 99.58 99.56 99.42 100.00 100.00 100.00 100.00 100.00 100.00 NA 97.50 100.00 100.00 100.00 100.00 99.71 NA NA 100.00 100.00 100.00 100.00 100.00 99.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 K jcn_only_AA CG10289,I_chr3L_6163043_6163216 chr3L - chr3L_6163028_6163216 chr3L_6163043_6163216 chr3L_6163217_6163316;chr3L_6162943_6163027 0.58 0.00 0.88 0.00 1.30 0.00 0.00 0.58 1.34 1.52 1.28 0.00 0.00 0.00 2.94 0.00 4.40 0.98 0.79 0.43 0.00 0.68 0.00 0.95 1.22 0.00 0.00 4.48 0.00 0.89 1.71 0.00 0.00 0.62 0.00 0.00 0.71 0.00 0.00 0.55 1.90 1.59 0.00 1.32 0.00 1.72 0.00 0.00 1.97 0.95 0.87 1.41 0.00 1.96 1.56 0.00 0.00 0.79 K intron_retention Nca,CG7646 chr3L + chr3L_19987836_19987907 chr3L_19987835_19987836;chr3L_19987907_19987908 chr3L_19987822_19987835;chr3L_19987908_19987953 10.71 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 21.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention RpS18,CG8908,I_chr2R_16151942_16151997,I_chr2R_16158045_16158109 chr2R + chr2R_16151616_16151751 chr2R_16151615_16151616;chr2R_16151751_16151752 chr2R_16151581_16151615;chr2R_16151752_16151937 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.07 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 K jcn_only_AA CG8128,I_chrX_15591697_15591816 chrX + chrX_15591697_15591816;chrX_15591697_15592065 chrX_15591697_15592355 chrX_15591597_15591696;chrX_15592356_15592720 96.00 94.44 96.00 86.96 NA NA 84.00 92.31 96.88 NA NA 93.94 NA 87.50 96.30 92.31 95.00 95.83 95.24 94.74 96.00 NA 97.22 97.73 NA 87.50 97.22 97.50 100.00 100.00 88.89 96.30 94.87 94.12 NA 89.29 100.00 100.00 97.92 100.00 85.71 93.18 NA 100.00 NA 94.00 100.00 100.00 92.68 100.00 100.00 100.00 100.00 100.00 96.00 94.12 100.00 97.56 K intron_retention CG1657 chrX + chrX_11227352_11227420 chrX_11227351_11227352;chrX_11227420_11227421 chrX_11227255_11227351;chrX_11227421_11228107 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 3.92 2.50 2.78 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Caki chr3R - chr3R_17613825_17615170 chr3R_17613824_17613825;chr3R_17615170_17615171 chr3R_17613705_17613824;chr3R_17615171_17615309 0.79 0.00 0.76 0.00 0.00 0.00 0.00 1.45 2.39 1.45 8.06 6.19 0.00 0.00 1.68 1.59 0.00 0.00 0.00 0.79 2.35 2.70 2.48 2.17 2.33 0.00 3.57 7.50 1.38 0.85 0.00 0.00 0.50 1.54 0.00 0.00 1.02 1.53 2.17 1.75 0.00 2.04 0.00 3.73 0.00 0.00 0.75 0.00 2.08 1.85 4.05 0.00 0.00 0.00 1.79 1.55 0.00 0.49 K jcn_only_AD CG32537,CG32536 chrX - chrX_19169562_19170509 chrX_19169562_19170250 chrX_19169433_19169561;chrX_19170510_19170572 11.54 NA 13.04 20.83 NA 15.00 NA 12.90 7.69 NA NA 4.17 NA NA 0.00 19.35 NA NA NA 9.80 NA 16.67 6.67 12.12 NA 5.00 21.43 NA 13.33 15.38 37.21 10.00 20.59 13.64 17.86 18.18 4.17 4.76 9.76 8.96 8.33 15.38 NA 13.79 6.82 10.87 7.41 2.94 2.22 19.05 18.52 NA 0.00 4.55 11.54 22.22 NA 5.88 K alternative_acceptor l(1)G0196,I_chrX_21900456_21904601 chrX + chrX_21898150_21898212;chrX_21898150_21898215 chrX_21898150_21898203 chrX_21897878_21898149;chrX_21898216_21898384 50.00 55.17 50.00 56.10 48.00 57.69 41.18 58.97 47.27 40.00 53.33 44.44 31.82 39.29 41.46 51.52 48.00 52.00 45.45 42.11 58.82 57.14 61.11 54.17 43.75 60.87 63.33 61.54 66.67 50.00 45.24 66.67 38.89 53.66 63.16 41.18 45.95 47.62 52.00 44.44 57.14 53.57 61.90 44.83 45.45 43.48 40.00 25.00 52.73 50.00 62.07 52.63 55.56 50.00 42.86 46.15 50.00 41.67 K alternative_donor LamC chr2R - chr2R_10458817_10458964 chr2R_10458817_10458881 chr2R_10458387_10458816;chr2R_10458965_10459687 30.71 20.00 50.00 40.74 50.00 42.11 50.00 35.71 48.65 23.53 NA 41.86 41.67 41.18 45.00 55.56 63.64 87.50 35.29 48.15 NA 26.47 31.43 34.62 30.00 64.29 26.83 16.67 22.58 25.93 50.00 NA 43.48 51.72 36.36 18.75 26.92 27.50 20.41 23.26 12.50 42.50 43.75 21.82 9.38 14.71 24.00 29.63 46.43 7.14 26.83 30.00 20.00 11.11 53.33 10.71 12.00 26.32 K intron_retention EI_chr3R_2912813_2912955,e(y)2b chr3R + chr3R_2919923_2919984 chr3R_2919922_2919923;chr3R_2919984_2919985 chr3R_2919861_2919922;chr3R_2919985_2920043 24.00 22.73 NA 23.53 NA NA 50.00 33.33 20.00 NA NA 28.21 NA 25.00 23.53 24.00 NA NA NA 16.22 NA NA NA 14.29 30.77 46.15 46.15 NA NA 30.77 28.57 26.67 NA 25.00 NA NA 21.05 14.29 6.67 26.67 NA 32.14 NA 23.33 NA NA NA NA 27.27 NA 18.52 NA 0.00 0.00 29.41 23.08 17.07 NA K intron_retention I_chr3L_1494947_1496080,pUf68,RI_chr3L_1499880_1501350,I_chr3L_1500309_1501350,I_chr3L_1500313_1501350,RI_chr3L_1500389_1501345,RI_chr3L_1501035_1501345 chr3L - chr3L_1500313_1501350 chr3L_1500312_1500313;chr3L_1501350_1501351 chr3L_1500289_1500312;chr3L_1501351_1501397 100.00 100.00 100.00 100.00 NA 100.00 NA 96.15 100.00 NA 100.00 100.00 96.00 100.00 100.00 93.75 90.00 NA 100.00 100.00 100.00 100.00 100.00 90.91 91.67 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 94.12 92.31 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 96.00 100.00 92.31 100.00 86.67 NA 100.00 93.75 93.33 100.00 100.00 K jcn_only_AA CG31324,I_chr3R_21933065_21933306,F_chr3R_21933069_21950156 chr3R + chr3R_21933065_21950156 chr3R_21933065_21933306 chr3R_21932969_21933064;chr3R_21950157_21950256 7.09 4.55 10.45 2.91 1.59 3.39 5.66 12.75 4.24 0.89 26.56 12.80 6.82 11.11 10.53 11.76 5.26 2.99 9.76 7.32 14.10 2.51 8.79 11.90 1.85 1.96 10.84 7.46 11.40 3.36 13.21 9.38 2.26 11.24 6.15 2.70 6.86 NA 2.50 6.36 8.20 7.56 10.20 3.03 8.79 5.26 9.84 8.59 7.95 12.94 6.15 3.33 6.52 3.03 8.96 17.39 1.85 4.76 K alternative_donor fs(1)h,I_chrX_7947328_7948140,I_chrX_7950171_7952371,I_chrX_7954192_7955240 chrX - chrX_7947328_7948155 chrX_7947328_7948140 chrX_7947228_7947327;chrX_7948156_7948240 1.92 1.85 4.48 3.61 2.13 3.64 3.51 2.08 2.26 0.00 2.38 0.94 13.64 2.17 1.32 3.92 2.27 1.54 0.00 0.90 8.51 1.94 2.60 1.39 2.94 1.30 0.00 0.00 6.00 2.67 1.89 NA 3.00 1.03 0.00 1.64 1.80 0.00 3.06 2.06 3.33 3.47 3.85 1.82 0.00 2.94 0.00 1.18 1.57 4.17 1.54 0.00 2.94 0.00 1.18 0.00 0.00 3.33 K intron_retention dmondo,I_chr2L_21289375_21289461,I_chr2L_21301528_21308287,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579 chr2L - chr2L_21289405_21289461 chr2L_21289404_21289405;chr2L_21289461_21289462 chr2L_21288052_21289404;chr2L_21289462_21289548 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 1.94 0.00 0.00 0.00 3.12 3.23 2.56 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N jcn_only_AD tefu,I_chr3R_11060517_11060585 chr3R - chr3R_11064906_11065001 chr3R_11064906_11064956 chr3R_11064882_11064905;chr3R_11065002_11065118 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 89.61 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 NA 100.00 88.89 NA 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2392054 chrX_2387249_2388436;chrX_2388671_2390808;chrX_2390959_2391350;chrX_2391522_2392054 chrX_2388437_2388670;chrX_2390809_2390958;chrX_2391351_2391521 chrX_2387149_2387248;chrX_2392055_2392148 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention ferrochelatase chr3R - chr3R_27637842_27637895 chr3R_27637841_27637842;chr3R_27637895_27637896 chr3R_27637463_27637841;chr3R_27637896_27637964 0.00 0.00 1.12 1.63 0.00 0.00 0.87 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 1.22 1.14 0.00 0.00 0.00 5.76 6.91 0.62 0.00 0.00 0.00 1.15 0.00 3.03 2.27 0.00 0.00 0.58 0.65 0.00 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG11247,I_chr3L_21718596_21718659 chr3L - chr3L_21718596_21718654 chr3L_21718595_21718596;chr3L_21718654_21718655 chr3L_21718496_21718595;chr3L_21718655_21718867 0.00 0.00 0.00 7.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG1718 chrX - chrX_21163958_21164368 chrX_21163957_21163958;chrX_21164368_21164369 chrX_21163741_21163957;chrX_21164369_21164557 64.50 66.67 66.67 82.14 NA 75.00 84.62 78.12 65.00 50.00 72.73 72.00 62.50 61.11 77.78 66.67 61.54 71.43 76.19 76.00 50.00 82.14 46.15 56.52 61.54 71.43 57.14 90.00 62.50 47.62 36.36 75.00 64.71 74.07 61.11 46.15 53.33 63.64 70.59 58.33 60.87 75.00 90.00 57.89 58.82 75.86 44.00 76.19 66.67 77.78 54.84 64.29 50.00 55.56 76.47 50.00 33.33 57.14 K intron_retention Mob2,RI_chr3L_11520443_11527440,CE_chr3L_11520917_11527526,RE_chr3L_11520925_11527489,RI_chr3L_11535932_11545929 chr3L - chr3L_11520917_11527489 chr3L_11520916_11520917;chr3L_11527489_11527490 chr3L_11520825_11520916;chr3L_11527490_11527540 75.00 60.87 85.71 83.33 NA 69.23 68.89 78.12 74.47 NA 86.67 74.07 77.78 73.68 76.00 80.56 66.67 73.33 64.00 68.97 83.33 76.67 66.67 100.00 NA 75.00 90.00 84.38 93.33 72.41 79.17 90.00 78.57 84.21 75.00 87.50 64.29 NA NA 73.91 93.33 66.67 66.67 65.38 87.50 72.00 66.67 91.67 76.47 85.71 63.64 90.00 70.00 66.67 75.00 86.67 52.94 63.64 K jcn_only_AD CG5594,CG2812 chr2R + chr2R_19810553_19811524 chr2R_19810917_19811524 chr2R_19811525_19811617 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Vha55,I_chr3R_8451950_8452332 chr3R - chr3R_8451950_8453170 chr3R_8451949_8451950;chr3R_8453170_8453171 chr3R_8451850_8451949;chr3R_8453171_8453283 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.00 0.61 0.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention S6k,I_chr3L_5800361_5803389,RI_chr3L_5801924_5803389 chr3L - chr3L_5793818_5798927 chr3L_5793817_5793818;chr3L_5798927_5798928 chr3L_5792049_5793817;chr3L_5798928_5799035 0.65 0.00 0.39 0.36 0.83 0.00 3.02 0.24 0.37 2.52 0.54 0.00 1.16 0.00 0.36 0.72 0.00 5.24 0.38 2.33 0.00 2.02 0.78 0.72 0.00 0.00 0.65 3.68 6.92 1.08 0.00 1.82 1.32 0.25 1.71 0.00 1.58 0.00 0.63 0.72 1.36 0.40 0.00 2.14 2.92 1.42 1.38 1.84 0.20 0.00 0.55 1.16 1.31 0.00 0.33 1.03 1.75 0.56 K jcn_only_AD CREFI_chr3R_10712253_10713568,CG33332,CG33331,E_chr3R_10717341_10717506 chr3R + chr3R_10712234_10713568 chr3R_10712253_10713568 chr3R_10713569_10713668;chr3R_10712211_10712233 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Adam,I_chr2R_5857058_5857250,I_chr2R_5857078_5857245 chr2R + chr2R_5857914_5857978 chr2R_5857913_5857914;chr2R_5857978_5857979 chr2R_5857777_5857913;chr2R_5857979_5858412 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.68 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.65 0.00 0.00 0.99 0.75 0.00 0.00 K jcn_only_AA CG11163,I_chr2R_1666219_1669711 chr2R - chr2R_1662576_1662764 chr2R_1662702_1662764 chr2R_1662765_1662934;chr2R_1662507_1662575 99.06 99.23 100.00 99.30 98.53 98.94 100.00 99.44 99.09 96.67 99.03 98.64 100.00 98.43 99.21 98.68 98.84 99.26 97.96 99.19 99.07 100.00 98.50 97.17 100.00 98.96 98.11 NA 95.45 100.00 98.68 96.49 100.00 98.80 95.45 96.00 98.28 98.02 100.00 100.00 97.50 98.96 98.73 100.00 100.00 99.10 99.15 100.00 99.05 96.97 100.00 100.00 100.00 100.00 100.00 99.21 99.01 98.73 K jcn_only_AD I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17198803_17199052;chr3R_17198803_17200781 chr3R_17198803_17199019 chr3R_17198703_17198802;chr3R_17200782_17200881 4.26 3.03 6.25 8.70 0.00 NA 8.57 11.43 8.33 NA 4.00 5.26 4.00 8.33 4.35 3.45 4.17 0.00 3.12 2.94 5.00 0.00 0.00 6.06 NA 2.63 12.12 NA 20.00 9.09 7.69 2.86 0.00 6.38 NA 12.50 2.33 0.00 3.23 0.00 8.00 8.33 0.00 NA 0.00 5.88 4.35 0.00 8.89 6.45 7.69 0.00 14.29 NA 9.76 3.33 4.17 0.00 K intron_retention CG11490 chr2L + chr2L_207632_207710 chr2L_207631_207632;chr2L_207710_207711 chr2L_207403_207631;chr2L_207711_208608 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA NA 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 5.26 10.71 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 0.00 5.56 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 K intron_retention l(2)NC136,I_chr2R_1545723_1546024 chr2R - chr2R_1548663_1548723 chr2R_1548662_1548663;chr2R_1548723_1548724 chr2R_1548312_1548662;chr2R_1548724_1548793 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_last_exon CG33129,I_chr2L_10966410_10967142,noncoding_2515,I_chr2L_10966622_10967108 chr2L - chr2L_10966410_10968133 chr2L_10966622_10968133 chr2L_10965993_10966409 chr2L_10966502_10966621 chr2L_10968134_10968152 97.14 94.12 95.56 98.98 98.08 97.14 98.33 99.00 99.38 92.86 98.28 99.18 98.00 98.21 98.53 98.91 97.87 98.21 98.61 99.27 98.15 97.92 97.44 92.86 83.33 97.50 87.50 85.71 95.92 90.48 95.45 95.92 94.74 99.00 88.89 92.59 97.06 90.00 82.35 91.30 92.11 97.22 97.73 96.00 95.12 96.23 96.77 97.40 99.21 95.65 90.00 97.22 95.24 89.47 98.51 96.55 97.96 98.47 K alternative_donor CG8334,I_chr3L_19870731_19870822 chr3L + chr3L_19870674_19871932 chr3L_19870731_19871932 chr3L_19871933_19872579;chr3L_19870631_19870673 55.56 65.38 51.61 59.42 72.00 66.67 63.27 67.35 61.11 52.94 50.00 50.88 73.08 58.33 51.28 60.47 76.92 46.88 68.00 41.43 40.91 50.00 50.00 53.85 45.83 61.29 65.85 80.00 42.11 50.00 44.44 59.09 64.00 56.10 66.67 51.43 58.82 58.62 66.67 54.84 55.56 55.56 50.00 51.43 72.00 60.00 50.00 48.44 57.58 50.00 51.35 55.00 36.00 54.55 67.74 61.11 45.45 38.18 K intron_retention Spf45 chr2L - chr2L_22959816_22959876 chr2L_22959815_22959816;chr2L_22959876_22959877 chr2L_22959602_22959815;chr2L_22959877_22960833 0.00 0.00 0.00 2.88 0.00 0.00 1.16 1.27 1.70 0.00 0.00 2.27 0.00 0.00 0.00 2.37 1.15 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.79 2.94 2.56 2.76 0.00 0.00 0.00 0.00 0.85 2.56 1.83 0.00 0.00 0.00 0.00 1.85 1.49 0.00 1.00 1.60 1.75 0.99 1.57 1.19 0.00 0.00 0.00 0.00 0.00 0.00 1.64 1.24 0.77 K intron_retention vap,RI_chrX_15897976_15899352,I_chrX_15897976_15899654,I_chrX_15898011_15899654,I_chrX_15898427_15899017,RI_chrX_15898427_15899654,RI_chrX_15899237_15899352,I_chrX_15899237_15899654 chrX - chrX_15898478_15899352 chrX_15898477_15898478;chrX_15899352_15899353 chrX_15898466_15898477;chrX_15899353_15899365 41.67 33.33 26.67 64.71 21.43 50.00 50.00 37.84 35.56 NA 41.67 33.33 42.86 28.57 15.79 44.74 44.44 NA 33.33 50.00 23.53 58.33 26.32 NA 41.67 47.06 52.94 55.56 47.62 50.00 41.38 50.00 72.73 35.00 35.71 88.89 14.29 NA 17.65 34.62 27.78 42.22 47.06 30.77 NA 43.75 NA 28.21 43.90 26.67 37.50 NA NA NA 47.83 NA 61.54 38.46 K intron_retention Nf1 chr3R + chr3R_21819207_21819386 chr3R_21819206_21819207;chr3R_21819386_21819387 chr3R_21819041_21819206;chr3R_21819387_21819584 22.22 NA NA 0.00 NA NA NA 26.32 22.22 NA NA NA NA NA NA NA NA NA NA NA NA NA 5.26 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 46.15 NA NA NA NA NA 41.67 NA NA NA K intron_retention ps,I_chr3R_5243723_5265067,I_chr3R_5243723_5270765,noncoding_15575,I_chr3R_5245770_5265067,I_chr3R_5245770_5269732,I_chr3R_5269733_5270765 chr3R + chr3R_5254375_5257753 chr3R_5254374_5254375;chr3R_5257753_5257754 chr3R_5254353_5254374;chr3R_5257754_5258205 41.18 NA 29.41 40.00 NA NA 29.63 18.18 46.88 63.64 NA 43.33 28.57 31.25 43.75 41.18 35.71 50.00 46.67 38.24 25.00 77.78 50.00 46.15 NA 35.29 55.00 60.00 NA 44.44 29.41 NA 53.33 52.00 NA 29.41 26.92 50.00 41.67 29.17 NA 39.39 64.71 38.10 NA NA NA 56.00 31.82 NA 37.50 54.55 NA NA 35.71 NA NA NA K alternative_acceptor His3_3B,I_chrX_9048718_9050612,RI_chrX_9048719_9050312,I_chrX_9048719_9050361,I_chrX_9048719_9050368,RI_chrX_9050411_9050612 chrX - chrX_9048719_9050612 chrX_9050411_9050612 chrX_9050613_9050712;chrX_9048619_9048718 0.15 0.15 0.18 0.10 0.15 0.00 0.09 0.09 0.05 0.00 0.00 0.20 0.11 0.18 0.15 0.12 0.00 0.18 0.16 0.16 0.15 0.21 0.13 0.13 0.21 0.14 0.32 0.34 0.34 0.00 0.22 0.00 0.31 0.09 0.29 0.25 0.12 0.18 0.16 0.22 0.00 0.08 0.00 0.19 0.49 0.35 0.23 1.03 0.17 0.38 0.15 0.00 0.00 0.00 0.15 0.23 0.16 0.00 K intron_retention msps,I_chr3R_11877071_11877796 chr3R + chr3R_11883488_11883565 chr3R_11883487_11883488;chr3R_11883565_11883566 chr3R_11883274_11883487;chr3R_11883566_11883687 100.00 100.00 100.00 99.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.27 99.07 100.00 100.00 100.00 100.00 100.00 100.00 99.00 100.00 100.00 99.39 100.00 98.53 100.00 98.57 99.07 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.08 98.73 99.38 98.41 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Atpalpha,I_chr3R_16792336_16798894,I_chr3R_16792925_16794113 chr3R + chr3R_16792336_16792746 chr3R_16792335_16792336;chr3R_16792746_16792747 chr3R_16792236_16792335;chr3R_16792747_16792815 91.67 66.67 90.00 100.00 100.00 88.89 76.19 92.31 96.00 100.00 88.89 86.96 91.67 100.00 100.00 100.00 100.00 NA 80.00 93.33 100.00 93.33 85.71 88.89 90.00 88.89 87.50 92.31 NA 90.00 75.00 NA 88.89 100.00 NA 100.00 100.00 NA 100.00 95.45 81.82 95.00 NA 88.89 45.45 90.91 NA 90.91 94.44 NA 91.67 NA NA NA 92.31 NA NA NA K alternative_donor CG9399,I_chr3R_5403032_5403329 chr3R - chr3R_5399318_5399515;chr3R_5399318_5399524;chr3R_5399318_5399863 chr3R_5399318_5399511 chr3R_5399076_5399317;chr3R_5399864_5399874 21.11 NA NA NA NA NA 25.00 NA 33.33 NA NA NA NA NA NA 25.00 NA NA NA 20.00 NA NA NA 20.00 NA NA NA NA NA NA 0.00 NA NA 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 22.22 NA 20.00 NA NA NA NA NA 25.00 NA K intron_retention RpS23,I_chr2R_10103243_10103455,I_chr2R_10103616_10103938 chr2R - chr2R_10103616_10104034 chr2R_10103615_10103616;chr2R_10104034_10104035 chr2R_10103516_10103615;chr2R_10104035_10104038 0.03 0.07 0.02 0.02 0.00 0.00 0.05 0.04 0.02 0.00 0.00 0.03 0.02 0.10 0.03 0.00 0.00 0.00 0.00 0.04 0.05 0.00 0.24 0.13 0.15 0.00 0.08 0.00 0.19 0.11 0.38 0.14 0.00 0.06 0.00 0.00 0.03 0.06 0.06 0.04 0.00 0.04 0.00 0.09 0.12 0.00 0.00 0.00 0.11 0.16 0.23 0.00 0.05 0.00 0.06 0.10 0.02 0.13 K intron_retention CG11009 chr3L + chr3L_12845629_12845715 chr3L_12845628_12845629;chr3L_12845715_12845716 chr3L_12845527_12845628;chr3L_12845716_12845816 7.23 4.76 5.41 9.59 NA 7.14 NA 15.00 18.18 NA 4.35 9.86 6.82 8.33 9.09 5.88 10.00 0.00 8.33 6.52 0.00 4.84 13.89 9.52 3.85 NA 11.63 10.91 NA 5.88 7.32 2.50 8.11 8.06 4.76 0.00 7.69 0.00 0.00 3.70 7.14 12.00 5.26 10.00 0.00 6.35 11.63 7.32 10.87 6.85 7.50 3.85 11.11 4.44 8.82 0.00 8.51 7.50 K alternative_donor CG4165,I_chrX_5317784_5317881,I_chrX_5321743_5321838 chrX + chrX_5316160_5316612;chrX_5316300_5316612;chrX_5315965_5316612 chrX_5316313_5316612 chrX_5316613_5317050;chrX_5315939_5315964 0.00 0.00 0.00 0.00 0.00 0.00 10.00 7.14 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 5.26 0.00 0.00 7.69 0.00 0.00 0.00 11.11 0.00 0.00 0.00 0.00 NA 10.00 0.00 0.00 10.00 0.00 0.00 0.00 9.09 50.00 0.00 0.00 0.00 25.00 0.00 0.00 12.50 0.00 20.00 0.00 0.00 0.00 NA 0.00 0.00 12.50 0.00 K intron_retention CG5037 chr2L + chr2L_10332675_10332738 chr2L_10332674_10332675;chr2L_10332738_10332739 chr2L_10332472_10332674;chr2L_10332739_10333114 1.25 2.22 0.00 3.12 0.00 0.00 4.00 0.00 1.52 0.00 1.89 3.23 0.00 0.00 0.00 5.94 1.69 4.84 3.39 5.23 0.00 0.00 0.00 0.00 0.00 0.00 1.20 0.00 2.08 0.00 0.00 0.00 2.33 2.44 3.57 5.00 0.00 0.00 0.00 5.19 1.61 3.51 4.17 1.25 1.64 1.68 1.06 0.00 3.28 2.00 0.00 1.52 0.00 2.35 0.00 1.85 0.00 3.64 K alternative_donor Appl,I_chrX_425910_437103 chrX + chrX_469384_469503 chrX_469396_469503 chrX_469504_469555;chrX_469307_469383 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA K intron_retention Fib,snoRNA:229 chr2R - chr2R_18961166_18961546 chr2R_18961165_18961166;chr2R_18961546_18961547 chr2R_18960485_18961165;chr2R_18961547_18961794 0.00 0.00 0.00 0.59 0.00 0.00 0.00 0.99 0.00 0.42 0.00 0.76 1.02 0.00 0.00 0.38 0.00 0.42 0.92 0.38 0.00 0.16 0.40 0.00 0.80 0.00 0.73 1.11 0.29 0.00 0.00 0.00 0.32 0.00 0.56 0.00 0.44 0.00 0.36 0.00 0.39 0.35 0.38 0.00 0.18 0.00 0.00 0.00 0.49 0.00 0.37 0.00 0.00 0.00 0.00 0.58 0.13 0.17 K alternative_acceptor CG12734,I_chr3L_3183812_3183932,I_chr3L_3184645_3185360 chr3L + chr3L_3184038_3184251 chr3L_3184038_3184248 chr3L_3183933_3184037;chr3L_3184252_3184644 52.94 35.48 53.85 57.89 43.75 35.71 47.62 56.00 53.66 52.63 55.56 59.26 60.00 38.46 36.36 50.00 NA 36.36 46.15 52.94 47.06 54.84 56.52 45.71 75.00 NA 52.50 65.38 47.62 64.71 53.33 68.75 50.00 52.38 47.06 56.25 53.33 38.24 50.00 73.08 45.00 47.22 60.00 37.50 57.14 53.85 50.00 40.00 58.62 54.84 51.28 41.18 56.25 53.85 53.33 53.12 61.90 46.15 K intron_retention Tao-1 chrX - chrX_19466221_19466284 chrX_19466220_19466221;chrX_19466284_19466285 chrX_19465999_19466220;chrX_19466285_19466458 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.29 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 K jcn_only_AA how chr3R + chr3R_17897152_17897460 chr3R_17897152_17897418 chr3R_17897055_17897151;chr3R_17897461_17897763 16.20 14.58 18.18 34.48 6.98 12.77 52.08 13.46 18.29 15.69 10.71 16.67 20.59 30.00 25.00 18.42 20.51 16.13 21.21 19.32 20.69 16.85 14.58 11.25 24.62 63.16 31.48 8.82 15.38 9.38 21.74 NA 32.73 17.02 18.52 45.59 9.17 5.08 9.68 16.28 29.03 14.77 22.86 9.84 28.57 15.38 10.42 8.33 14.61 17.24 9.76 3.33 14.29 12.90 8.51 9.09 8.00 18.18 K intron_retention RpII215,I_chrX_11466174_11466223 chrX - chrX_11461012_11461075 chrX_11461011_11461012;chrX_11461075_11461076 chrX_11458767_11461011;chrX_11461076_11463319 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.46 5.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG13900,snoRNA:Me28S-A771,I_chr3L_830745_830907 chr3L - chr3L_830342_830907 chr3L_830341_830342;chr3L_830907_830908 chr3L_830034_830341;chr3L_830908_831007 0.85 0.29 0.50 1.13 0.30 0.65 0.56 0.73 0.81 1.30 0.00 0.66 0.85 0.65 0.95 1.04 0.87 0.00 0.51 0.86 0.00 1.64 1.28 1.91 0.48 0.00 2.37 7.30 0.61 2.26 0.30 0.87 1.64 0.77 0.92 0.95 1.00 1.07 0.82 1.46 0.00 0.71 0.29 1.80 0.00 1.00 0.00 0.00 0.81 1.08 1.89 1.97 1.24 0.70 0.44 1.44 1.28 2.42 K intron_retention CG1513,I_chr2R_5778649_5778739 chr2R - chr2R_5777241_5778739 chr2R_5777240_5777241;chr2R_5778739_5778740 chr2R_5777112_5777240;chr2R_5778740_5778839 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.93 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.46 0.00 0.00 1.89 0.00 0.00 2.63 6.94 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.87 0.00 0.00 1.53 0.00 0.98 0.00 0.00 0.00 3.03 0.00 2.60 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor cav chr3R + chr3R_20047476_20048064;chr3R_20047349_20048064 chr3R_20047648_20048064 chr3R_20048065_20048196;chr3R_20047247_20047348 20.00 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N cassette CG15547,I_chr3R_26712627_26714606,RI_chr3R_26713323_26714382 chr3R - chr3R_26708650_26708849 chr3R_26708650_26708704;chr3R_26708794_26708849 chr3R_26708705_26708793 chr3R_26707547_26708649;chr3R_26708850_26709639 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 61.29 100.00 100.00 90.16 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention CG34126,I_chr2L_4984636_4984712 chr2L + chr2L_4988049_4988114 chr2L_4988048_4988049;chr2L_4988114_4988115 chr2L_4987907_4988048;chr2L_4988115_4988672 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.70 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor l(2)gl,I_chr2L_17213_21135,RI_chr2L_20021_20830,I_chr2L_20974_21065 chr2L - chr2L_20021_21065;chr2L_20021_20830 chr2L_20021_21135 chr2L_19921_20020;chr2L_21136_21145 44.50 NA NA 50.00 NA NA 50.00 33.33 46.67 NA NA 10.00 NA NA NA 58.33 NA NA 50.00 NA NA NA NA NA NA NA NA NA NA NA 28.57 NA NA 46.15 NA NA NA NA NA NA NA 40.00 28.57 14.29 NA NA NA 42.86 46.15 NA NA NA NA NA NA NA NA NA K alternative_acceptor CG2225,I_chr2L_21669234_21669366 chr2L - chr2L_21669234_21669366 chr2L_21669239_21669366 chr2L_21669367_21669466;chr2L_21669134_21669233 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 93.33 100.00 95.83 95.45 94.12 100.00 100.00 100.00 94.44 100.00 100.00 96.88 100.00 100.00 100.00 92.31 100.00 100.00 96.77 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 93.33 K intron_retention Pde1c,esc,I_chr2L_11838774_11925541 chr2L - chr2L_11828372_11828735 chr2L_11828371_11828372;chr2L_11828735_11828736 chr2L_11827261_11828371;chr2L_11828736_11828907 0.00 0.00 0.00 8.00 0.00 0.00 0.00 0.00 0.00 0.00 11.11 2.70 NA 0.00 0.00 0.00 0.00 0.00 0.00 4.44 3.70 0.00 4.35 0.00 NA 0.00 10.53 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 2.08 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 2.08 K alternative_acceptor F_chr3R_7396835_7396923,wkd chr3R + chr3R_7408707_7409035 chr3R_7408707_7408764 chr3R_7408638_7408706;chr3R_7409036_7409278 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG31793 chr2L + chr2L_19003880_19003947 chr2L_19003879_19003880;chr2L_19003947_19003948 chr2L_19003811_19003879;chr2L_19003948_19004202 2.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 4.76 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor aub chr2L - chr2L_11000919_11001447 chr2L_11000919_11001269 chr2L_11000786_11000918;chr2L_11001448_11001480 100.00 100.00 100.00 96.55 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Axs,RI_chrX_16575870_16575942 chrX - chrX_16577391_16577454 chrX_16577390_16577391;chrX_16577454_16577455 chrX_16577242_16577390;chrX_16577455_16577918 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG16952,RI_chrX_15764587_15765393,I_chrX_15766003_15766047 chrX + chrX_15769239_15769339 chrX_15769239_15769300 chrX_15769171_15769238;chrX_15769340_15769402 99.69 100.00 98.36 97.22 NA 96.36 96.23 98.70 97.78 100.00 100.00 100.00 100.00 100.00 98.25 100.00 97.14 100.00 100.00 97.45 100.00 98.55 100.00 100.00 100.00 100.00 96.61 96.15 100.00 100.00 100.00 97.89 100.00 98.65 100.00 95.92 100.00 97.78 100.00 99.21 98.02 96.77 100.00 100.00 97.32 99.37 96.72 99.36 97.85 94.59 97.40 100.00 100.00 96.43 100.00 100.00 100.00 98.70 K intron_retention I_chr3L_22859135_22860499,CG11109,Ssl1 chr3L + chr3L_22865447_22865534 chr3L_22865446_22865447;chr3L_22865534_22865535 chr3L_22865358_22865446;chr3L_22865535_22866823 9.38 NA NA NA NA NA 3.70 22.22 9.38 NA NA 10.00 5.88 NA NA 16.00 NA NA NA 8.33 NA NA NA NA NA NA 30.77 NA NA NA 25.00 NA NA 0.00 NA NA NA NA 6.25 25.00 NA 14.29 20.00 NA NA 0.00 NA NA 13.04 NA 9.09 NA NA NA NA 6.67 0.00 NA K alternative_acceptor htt,I_chr3R_24527763_24528033,I_chr3R_24542203_24543363 chr3R + chr3R_24542203_24544152 chr3R_24542203_24543363 chr3R_24542103_24542202;chr3R_24544153_24544634 0.00 0.00 0.00 0.00 0.00 0.00 3.70 3.33 0.00 NA 0.00 0.00 0.00 0.00 0.00 5.56 0.00 NA 0.00 0.00 0.00 20.00 4.55 3.85 NA NA 0.00 9.09 NA NA 3.85 NA 0.00 0.00 NA 0.00 0.00 0.00 2.94 5.26 NA 0.00 0.00 0.00 NA NA NA 9.09 0.00 NA 4.00 NA NA NA 0.00 NA NA NA K cassette Gel,I_chr3R_63962_64024,I_chr3R_66533_66599 chr3R + chr3R_61047_63346 chr3R_61047_62303;chr3R_62527_63346 chr3R_62304_62526 chr3R_61015_61046;chr3R_63347_63446 98.73 99.50 99.53 98.82 98.75 98.84 99.04 98.99 98.69 97.66 98.67 98.95 98.99 98.32 99.14 98.69 99.76 98.95 98.55 99.69 98.55 94.81 99.23 98.26 99.49 98.04 97.36 94.62 96.23 99.43 98.73 96.62 97.00 99.49 98.51 95.89 98.89 98.68 99.22 98.07 97.96 98.77 99.18 97.92 98.95 98.30 97.97 93.78 99.23 99.05 98.03 93.88 98.49 99.46 98.83 97.50 99.64 98.78 K alternative_acceptor CG10874 chr2L - chr2L_2190785_2191849 chr2L_2191079_2191849 chr2L_2191850_2192090;chr2L_2190707_2190784 100.00 98.59 98.48 100.00 100.00 100.00 98.89 98.89 100.00 100.00 100.00 98.99 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.40 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.70 99.21 97.20 98.65 100.00 98.92 100.00 100.00 98.70 99.20 100.00 100.00 99.47 100.00 100.00 100.00 100.00 99.43 99.29 100.00 99.46 100.00 98.77 100.00 100.00 100.00 98.61 100.00 100.00 100.00 100.00 K cassette cp309,I_chr3L_15074145_15074432 chr3L - chr3L_15060079_15060601 chr3L_15060079_15060437;chr3L_15060518_15060601 chr3L_15060438_15060517 chr3L_15059341_15060078;chr3L_15060602_15060712 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 1.15 K alternative_acceptor CG5741,I_chr3L_8928033_8928095 chr3L - chr3L_8927409_8927504 chr3L_8927412_8927504 chr3L_8927505_8927696;chr3L_8927331_8927408 93.33 100.00 100.00 83.33 92.86 93.33 89.66 100.00 92.50 90.00 100.00 92.86 87.50 85.71 100.00 94.74 93.33 93.75 93.75 83.87 93.75 92.50 95.24 95.83 90.91 91.30 94.74 93.75 96.15 85.00 93.75 94.12 93.75 93.75 94.74 88.24 96.30 94.12 100.00 92.00 87.50 86.21 92.31 94.44 88.24 100.00 86.67 93.33 85.71 92.86 91.30 93.33 90.91 93.33 100.00 87.50 88.24 85.00 K jcn_only_AD CG33129,I_chr2L_10966410_10967142,noncoding_2515,I_chr2L_10966622_10967108 chr2L - chr2L_10966622_10968104;chr2L_10966622_10968133;chr2L_10966622_10967855 chr2L_10966622_10968083 chr2L_10966522_10966621;chr2L_10968134_10968152 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA NA NA NA NA 0.00 0.68 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 0.00 K intron_retention vir-1,I_chr2L_12404178_12407208,RE_chr2L_12409622_12421640,noncoding_2764,I_chr2L_12421830_12423260 chr2L - chr2L_12407735_12409455 chr2L_12407734_12407735;chr2L_12409455_12409456 chr2L_12407550_12407734;chr2L_12409456_12409623 0.00 0.00 0.00 0.08 0.10 0.00 0.08 0.00 0.04 0.21 0.00 0.06 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.06 0.16 0.00 0.06 0.00 0.00 0.03 0.00 0.00 0.08 0.00 0.09 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.05 0.00 0.08 0.00 0.16 0.07 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention ORMDL chr3L + chr3L_21628870_21629086 chr3L_21628869_21628870;chr3L_21629086_21629087 chr3L_21628718_21628869;chr3L_21629087_21629299 4.48 7.69 3.92 9.86 3.28 1.69 4.11 4.88 3.54 3.57 8.33 4.35 1.64 0.00 8.45 6.25 3.77 3.92 6.45 3.54 6.12 4.55 6.82 5.80 0.00 3.57 12.77 13.46 14.29 6.06 0.00 4.76 2.56 2.63 0.00 19.44 3.39 5.26 6.35 4.40 6.90 3.42 0.00 4.76 0.00 4.48 2.13 5.41 3.16 5.77 7.55 0.00 5.13 5.26 2.78 5.88 5.19 3.85 K intron_retention Mvl,I_chr3R_16884191_16886355 chr3R - chr3R_16884191_16886466 chr3R_16884190_16884191;chr3R_16886466_16886467 chr3R_16884091_16884190;chr3R_16886467_16886503 14.29 NA 25.00 NA NA NA NA 0.00 3.45 NA NA 0.00 NA NA NA NA 15.38 21.43 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA 12.00 NA NA NA NA NA 50.00 NA NA NA NA NA NA 14.29 NA NA NA K intron_retention Ugt86Di chr3R - chr3R_6979216_6979280 chr3R_6979215_6979216;chr3R_6979280_6979281 chr3R_6978956_6979215;chr3R_6979281_6979594 0.00 0.00 0.00 2.27 0.00 0.00 3.12 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 NA K cassette eIF4G,I_chr4_938370_939161,I_chr4_948813_950447 chr4 - chr4_938370_939161 chr4_938370_938949;chr4_939108_939161 chr4_938950_939107 chr4_938270_938369;chr4_939162_939261 99.72 99.59 99.63 98.02 100.00 100.00 99.75 99.79 100.00 99.17 100.00 99.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.57 99.56 100.00 97.78 99.59 99.43 97.77 100.00 99.47 95.45 99.51 99.66 100.00 99.60 99.54 99.47 100.00 100.00 99.42 99.58 99.74 99.45 99.79 100.00 99.64 99.42 99.66 100.00 99.30 99.79 99.62 100.00 100.00 99.54 100.00 99.71 100.00 99.63 99.72 K jcn_only_AD CG2246,I_chr3R_26421344_26425985,RI_chr3R_26421349_26425985,I_chr3R_26421349_26427017,noncoding_20201 chr3R - chr3R_26421349_26427138 chr3R_26421349_26426922 chr3R_26421249_26421348;chr3R_26427139_26427178 4.55 NA NA NA NA NA 4.55 NA 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA 8.11 NA NA 5.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA 4.55 NA NA 0.00 9.38 NA 9.52 NA 3.85 NA 0.00 10.00 2.56 10.81 4.35 3.57 NA 4.55 NA NA NA 5.00 12.82 K intron_retention Hrb27C,I_chr2L_6924401_6924743 chr2L + chr2L_6920862_6922730 chr2L_6920861_6920862;chr2L_6922730_6922731 chr2L_6920793_6920861;chr2L_6922731_6922826 4.76 4.29 3.70 3.95 3.08 2.88 30.56 1.46 4.20 NA 7.81 2.45 8.60 3.57 2.08 2.74 3.60 4.29 2.82 4.57 4.62 4.88 5.88 8.93 5.66 7.78 7.55 7.14 10.71 2.13 2.52 12.90 13.64 2.62 5.41 47.83 5.26 4.65 5.88 7.27 12.00 4.12 5.30 6.00 26.67 5.00 0.00 7.81 3.31 6.25 5.19 10.14 0.00 4.76 2.29 2.94 0.00 4.76 K cassette CG31038,I_chr3R_25705533_25722419,I_chr3R_25727788_25727905 chr3R + chr3R_25705533_25723021 chr3R_25705533_25722419;chr3R_25722952_25723021 chr3R_25722420_25722951 chr3R_25705433_25705532;chr3R_25723022_25723367 6.25 3.85 5.88 7.69 6.25 6.67 NA 6.25 7.41 5.56 NA 10.53 NA 6.67 5.88 18.18 10.00 17.65 9.09 3.85 0.00 7.69 3.85 12.50 6.67 NA 6.25 8.33 8.33 6.67 NA 9.52 4.26 6.67 3.57 6.67 8.00 5.00 11.76 6.25 4.76 4.17 7.69 5.88 5.88 5.88 13.04 5.00 4.00 3.45 6.25 NA 5.56 4.76 0.00 4.17 6.67 3.03 K intron_retention JhI-21,I_chr2L_12055360_12055714 chr2L - chr2L_12053925_12053981 chr2L_12053924_12053925;chr2L_12053981_12053982 chr2L_12053657_12053924;chr2L_12053982_12054084 0.00 0.00 0.00 0.29 0.00 0.34 0.00 0.00 0.15 0.00 0.00 0.34 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.34 0.00 0.34 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.35 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor Aut1,I_chr3L_18742839_18742896,RI_chr3L_18742839_18742911 chr3L + chr3L_18742839_18742896;chr3L_18742839_18742911 chr3L_18742839_18742892 chr3L_18742770_18742838;chr3L_18742912_18742977 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.00 100.00 100.00 100.00 97.14 96.67 100.00 100.00 100.00 95.24 84.21 97.30 95.45 96.00 100.00 100.00 100.00 100.00 100.00 97.22 100.00 96.67 97.78 100.00 100.00 100.00 100.00 97.92 100.00 96.88 100.00 100.00 100.00 100.00 100.00 97.06 100.00 100.00 96.00 97.62 98.88 K cassette Khc-73 chr2R - chr2R_11412243_11412519 chr2R_11412243_11412364;chr2R_11412407_11412519 chr2R_11412365_11412406 chr2R_11410580_11412242;chr2R_11412520_11412834 19.23 16.67 15.62 20.41 21.74 25.00 6.00 22.64 14.49 30.00 19.23 28.95 33.33 18.75 12.50 14.29 16.67 13.33 10.26 12.73 3.70 34.15 21.62 32.00 20.00 8.33 20.00 32.00 28.57 12.50 16.67 27.27 20.41 15.91 19.05 33.33 22.45 13.64 24.14 35.90 17.65 18.75 15.79 31.03 5.26 26.92 NA 22.64 14.58 23.08 23.08 28.57 23.08 NA 16.22 19.05 7.69 11.63 K intron_retention ImpL3,I_chr3L_6253532_6253604 chr3L - chr3L_6253537_6253604 chr3L_6253536_6253537;chr3L_6253604_6253605 chr3L_6253081_6253536;chr3L_6253605_6253704 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.60 1.80 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.28 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 K jcn_only_AA E(bx),I_chr3L_240127_240176,I_chr3L_246324_246699 chr3L - chr3L_240111_240176;chr3L_240117_240176;chr3L_240127_240176 chr3L_240114_240176 chr3L_240177_240276;chr3L_240027_240110 21.31 20.59 20.79 14.29 22.03 22.64 22.15 16.79 26.00 25.00 8.33 19.14 20.55 17.91 19.44 22.00 25.00 19.78 27.06 20.81 15.28 19.05 16.84 25.00 26.92 21.43 17.65 12.50 30.00 19.44 14.58 25.45 17.86 23.62 12.31 27.55 29.29 21.15 28.42 23.45 21.31 22.46 21.67 31.40 22.62 14.17 17.14 21.94 14.08 10.20 22.81 17.65 17.24 28.81 21.88 18.33 28.85 22.22 K intron_retention CG5871,NELF-A chr3R + chr3R_17046829_17046894 chr3R_17046828_17046829;chr3R_17046894_17046895 chr3R_17046339_17046828;chr3R_17046895_17046989 0.00 0.00 0.00 0.00 0.00 0.00 5.00 2.56 1.89 0.00 0.00 0.00 0.00 0.00 0.00 7.41 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 5.88 0.00 0.00 0.00 0.00 5.71 5.26 0.00 0.00 0.00 0.00 1.96 0.00 0.00 4.76 0.00 0.00 4.55 0.00 0.00 0.00 0.00 10.71 0.00 0.00 0.00 3.85 0.00 0.00 2.63 0.00 K cassette CG18854,RI_chr2L_9789598_9789790,I_chr2L_9789694_9789790,REI_chr2L_9789718_9789790,I_chr2L_9790307_9790615,I_chr2L_9790310_9790556 chr2L - chr2L_9789616_9789790 chr2L_9789616_9789674;chr2L_9789718_9789790 chr2L_9789675_9789717 chr2L_9789594_9789615;chr2L_9789791_9789832 25.95 24.48 25.78 41.86 25.61 21.60 22.65 27.92 24.80 30.43 20.55 21.08 33.85 28.57 25.31 19.42 29.67 27.66 27.68 21.60 18.84 35.26 11.79 33.51 32.12 13.95 32.03 32.12 14.40 18.05 25.95 22.52 21.88 26.67 23.08 9.20 29.78 28.39 31.36 27.25 19.58 23.14 30.12 27.42 18.75 24.05 32.20 20.44 21.72 30.25 30.32 29.93 18.94 29.55 27.76 26.47 27.20 18.03 K intron_retention Msp-300,I_chr2L_5185965_5188116,snoRNA:Psi28S-2263,I_chr2L_5197634_5197866 chr2L + chr2L_5185965_5187606 chr2L_5185964_5185965;chr2L_5187606_5187607 chr2L_5185865_5185964;chr2L_5187607_5187640 46.84 43.59 42.31 35.23 43.18 45.45 47.69 38.98 40.44 24.00 81.48 32.77 55.93 43.40 35.53 37.35 36.00 51.72 42.86 46.84 51.43 15.00 42.25 67.50 66.67 60.71 60.00 72.41 46.67 38.89 25.00 81.25 47.62 38.24 50.00 37.14 41.03 23.53 59.68 55.00 94.74 41.58 44.44 40.48 88.24 82.14 77.42 33.33 39.82 91.89 52.31 50.00 68.57 95.24 48.33 80.00 88.46 68.42 K mutually_exclusive CG42595,I_chr2RHet_3155517_3174709,RI_chr2RHet_3175044_3179353,RI_chr2RHet_3179300_3179586,I_chr2RHet_3179481_3179586 chr2RHet - chr2RHet_3175044_3179353,chr2RHet_3179494_3179586 chr2RHet_3175044_3179091,chr2RHet_3179300_3179586 chr2RHet_3179354_3179493 chr2RHet_3179092_3179299 chr2RHet_3174944_3175043;chr2RHet_3179587_3179598 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 75.00 80.00 NA 80.00 NA NA 100.00 100.00 NA 100.00 75.00 NA NA NA 100.00 NA 66.67 NA NA NA NA NA 100.00 100.00 NA NA 66.67 NA 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA 83.33 K multi_cassette Ppn,F_chr3R_24347009_24347078 chr3R - chr3R_24348983_24351592 chr3R_24348983_24349248;chr3R_24349420_24349501;chr3R_24349697_24349755;chr3R_24349940_24349995;chr3R_24351030_24351592 chr3R_24349249_24349419;chr3R_24349502_24349696;chr3R_24349756_24349939;chr3R_24349996_24351029 chr3R_24348417_24348982;chr3R_24351593_24351772 100.00 100.00 100.00 75.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 83.33 100.00 75.00 83.33 100.00 94.74 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 90.91 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_donor CG16979 chr3L + chr3L_15569716_15569861 chr3L_15569803_15569861 chr3L_15569862_15571775;chr3L_15569652_15569715 100.00 100.00 100.00 93.33 NA 81.82 100.00 100.00 100.00 NA NA 94.12 100.00 NA 100.00 94.12 100.00 83.33 91.67 92.86 NA 100.00 100.00 NA NA 100.00 100.00 100.00 NA NA 88.89 NA 88.89 93.33 100.00 100.00 100.00 NA 100.00 100.00 NA 93.75 88.89 100.00 NA 100.00 100.00 NA 93.33 100.00 100.00 NA 85.71 NA 100.00 100.00 100.00 100.00 K intron_retention tnc,beta4GalT7,Hr96 chr3R + chr3R_20849872_20849938 chr3R_20849871_20849872;chr3R_20849938_20849939 chr3R_20849250_20849871;chr3R_20849939_20850239 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 NA 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 NA 3.51 0.00 19.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 NA 0.00 0.00 0.00 K alternative_last_exon CG42268,RI_chr3L_9728390_9729070 chr3L - chr3L_9728390_9730228 chr3L_9730066_9730228 chr3L_9727021_9728389 chr3L_9729901_9730065 chr3L_9730229_9730259 36.66 NA 50.00 NA NA NA NA 33.33 33.33 NA NA NA NA NA NA NA NA NA NA 50.00 NA 57.14 NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K intron_retention I_chr2L_8182451_8183191,CG8460,CG8455 chr2L + chr2L_8197822_8197878 chr2L_8197821_8197822;chr2L_8197878_8197879 chr2L_8197632_8197821;chr2L_8197879_8198082 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention Cpr chr2L + chr2L_6339126_6342157 chr2L_6339125_6339126;chr2L_6342157_6342158 chr2L_6338818_6339125;chr2L_6342158_6342349 0.52 1.32 0.83 0.79 0.00 0.00 0.69 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.95 0.00 0.00 0.00 1.09 0.00 1.63 0.80 1.10 0.00 0.00 1.31 1.00 1.17 0.00 1.37 0.00 0.00 0.65 1.39 0.64 0.00 0.00 0.97 0.29 0.00 0.00 2.44 1.04 0.75 1.13 0.00 0.76 0.52 0.00 1.17 1.80 0.00 1.09 0.79 0.00 0.00 0.60 K intron_retention CG8112,RI_chr3R_4539493_4539602,noncoding_15376,I_chr3R_4545118_4545525 chr3R + chr3R_4539493_4539867 chr3R_4539492_4539493;chr3R_4539867_4539868 chr3R_4539393_4539492;chr3R_4539868_4540519 6.06 6.06 2.38 8.05 0.00 6.06 23.81 7.14 7.41 7.69 5.56 9.59 26.09 4.76 8.51 15.38 11.43 4.65 13.64 5.77 8.33 3.39 4.65 6.06 4.17 0.00 2.27 6.67 3.03 0.00 2.27 3.85 6.25 8.93 0.00 0.00 8.89 7.41 0.00 7.55 10.00 5.00 14.71 2.27 6.67 5.13 2.94 11.76 8.70 15.38 12.77 7.41 0.00 0.00 3.57 6.25 4.26 11.43 K intron_retention Cdk4,RI_chr2R_12471503_12471656 chr2R + chr2R_12467039_12468346 chr2R_12467038_12467039;chr2R_12468346_12468347 chr2R_12467030_12467038;chr2R_12468347_12468520 23.61 NA 15.38 22.22 NA NA NA 20.00 21.88 NA 28.57 20.69 25.00 NA 25.00 29.17 NA NA 29.41 15.62 NA NA NA NA NA 33.33 NA NA NA NA 30.77 NA NA 21.74 NA NA NA NA NA NA NA 26.09 NA NA NA NA NA NA 21.43 NA NA NA NA NA NA NA NA NA K intron_retention CG9426 chr2L - chr2L_13218977_13219036 chr2L_13218976_13218977;chr2L_13219036_13219037 chr2L_13218785_13218976;chr2L_13219037_13219759 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 2.70 0.00 0.00 8.33 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA K intron_retention CG7770 chr3L + chr3L_19917467_19917521 chr3L_19917466_19917467;chr3L_19917521_19917522 chr3L_19917392_19917466;chr3L_19917522_19917749 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.78 100.00 100.00 100.00 100.00 100.00 98.86 100.00 100.00 K alternative_donor CG32625,RI_chrX_13650549_13650612 chrX - chrX_13650549_13650616 chrX_13650549_13650612 chrX_13650449_13650548;chrX_13650617_13650712 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 NA 0.00 NA 0.00 0.00 0.00 1.67 NA 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG12734,I_chr3L_3183812_3183932,I_chr3L_3184645_3185360 chr3L + chr3L_3183998_3184251 chr3L_3183998_3184248 chr3L_3183933_3183997;chr3L_3184252_3184644 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N jcn_only_AD JhI-26,I_chr2R_12177114_12177266 chr2R + chr2R_12178257_12178432 chr2R_12178379_12178432 chr2R_12178433_12178520;chr2R_12177457_12178256 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG6448,I_chr2L_22141769_22141830 chr2L + chr2L_22141769_22141833 chr2L_22141768_22141769;chr2L_22141833_22141834 chr2L_22141669_22141768;chr2L_22141834_22141930 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 10.53 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 5.26 NA NA NA 0.00 NA 2.38 0.00 NA 0.00 NA NA NA NA NA NA 0.00 K alternative_acceptor CG10737 chr2R + chr2R_15062754_15063752;chr2R_15062754_15063692 chr2R_15062754_15063770 chr2R_15062592_15062753;chr2R_15063771_15063852 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG5447,I_chr3R_22278964_22279701 chr3R + chr3R_22278964_22279701 chr3R_22278964_22279290;chr3R_22279631_22279701 chr3R_22279291_22279630 chr3R_22278864_22278963;chr3R_22279702_22279801 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention AT25722,CG3376 chr2R + chr2R_20149373_20149448 chr2R_20149372_20149373;chr2R_20149448_20149449 chr2R_20149309_20149372;chr2R_20149449_20149631 47.06 NA NA 70.00 NA NA 24.00 59.09 45.45 NA NA 36.11 NA 53.85 NA 36.84 NA 46.67 NA 47.06 NA 52.00 NA NA NA NA NA NA NA NA 35.71 NA NA 46.67 NA NA NA NA NA 42.86 NA 50.00 NA 56.25 NA 53.33 NA 59.09 31.25 NA 66.67 NA 33.33 NA NA NA NA 51.43 K alternative_acceptor Shawn_Tyler,CG14213 chrX + chrX_19533427_19533487 chrX_19533427_19533478 chrX_19533178_19533426;chrX_19533488_19533853 98.90 100.00 100.00 98.44 100.00 100.00 97.62 97.83 98.90 97.78 97.56 100.00 100.00 100.00 98.21 97.22 100.00 97.50 100.00 99.01 100.00 98.81 98.75 98.55 100.00 100.00 98.18 96.67 98.31 98.28 97.56 100.00 98.44 100.00 100.00 97.56 100.00 98.48 98.81 98.92 97.78 98.90 100.00 100.00 96.30 100.00 100.00 100.00 98.59 98.57 100.00 100.00 100.00 98.31 98.00 100.00 100.00 98.28 K jcn_only_AD CkIalpha,I_chrX_12548371_12549203,I_chrX_12548704_12549203,I_chrX_12548772_12549203 chrX + chrX_12548202_12549203;chrX_12548131_12549203 chrX_12547919_12549203 chrX_12549204_12549210;chrX_12547852_12547918 0.00 0.00 1.08 0.00 1.23 1.23 1.02 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 1.27 0.00 0.00 0.00 1.90 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_acceptor Droj2,RI_chr3R_9207981_9208471,RI_chr3R_9208529_9209185 chr3R + chr3R_9207981_9209956;chr3R_9207981_9208471 chr3R_9207981_9209185 chr3R_9207926_9207980;chr3R_9209957_9210301 98.70 99.47 99.56 89.82 99.81 99.53 98.02 96.14 98.47 99.64 99.46 98.32 97.84 97.92 99.35 98.48 99.59 97.79 98.28 99.49 99.65 98.33 98.86 99.69 97.12 95.76 97.57 97.78 98.11 98.81 99.53 98.03 99.51 98.16 99.73 98.95 98.70 98.78 99.07 98.73 97.90 99.01 99.39 97.18 98.17 98.20 99.66 98.69 98.40 99.69 98.68 99.45 98.88 99.62 98.56 98.61 98.41 99.17 K intron_retention RhoGAP71E,I_chr3L_15583097_15589765 chr3L + chr3L_15594396_15597935 chr3L_15594395_15594396;chr3L_15597935_15597936 chr3L_15594333_15594395;chr3L_15597936_15597984 57.14 53.33 50.00 81.82 70.00 NA 57.14 67.86 61.29 NA 80.00 56.52 69.23 75.00 75.00 81.82 50.00 56.25 50.00 63.33 53.33 40.91 43.48 42.11 NA NA 68.18 84.00 46.67 63.64 83.33 NA 28.57 51.85 66.67 NA 44.12 44.44 34.78 72.22 80.00 44.44 57.14 40.00 NA 42.86 NA 65.22 61.54 NA 61.54 NA NA NA 71.43 NA NA 33.33 K intron_retention RN-tre chr2R - chr2R_9874977_9875877 chr2R_9874976_9874977;chr2R_9875877_9875878 chr2R_9874462_9874976;chr2R_9875878_9875942 6.12 2.70 2.44 13.24 0.00 10.91 8.00 6.06 5.22 22.22 2.22 11.11 16.22 4.76 8.33 8.82 5.77 6.06 4.29 6.62 6.17 12.90 2.25 4.84 8.89 2.56 5.97 43.75 16.95 6.78 11.94 6.12 9.46 3.12 7.69 12.20 6.49 0.00 5.06 11.46 11.11 6.35 11.54 10.91 7.27 5.60 1.56 6.02 6.02 6.67 2.70 2.70 6.41 0.00 6.06 2.78 1.68 4.23 K jcn_only_AD Dscam,I_chr2R_3244812_3249222,FI_chr2R_3249373_3251385,FI_chr2R_3251554_3255892 chr2R - chr2R_3249373_3250528;chr2R_3249373_3254309;chr2R_3249373_3253447;chr2R_3249373_3252522;chr2R_3249373_3252236;chr2R_3249373_3252816;chr2R_3249373_3253970;chr2R_3249373_3250836;chr2R_3249373_3251960;chr2R_3249373_3251099 chr2R_3249373_3251682 chr2R_3249273_3249372 9.09 10.71 8.51 3.12 8.00 9.68 2.50 10.34 4.88 27.27 NA 25.00 2.70 11.76 7.32 3.77 13.89 9.68 2.86 4.44 4.00 10.00 4.29 5.56 0.00 8.00 5.41 16.13 7.14 14.12 5.88 10.71 11.25 5.45 9.68 11.90 3.64 5.26 7.32 4.49 13.79 13.85 12.50 12.07 9.09 15.79 12.50 16.28 2.99 NA 4.44 10.00 16.13 NA 9.62 10.00 NA 6.52 K intron_retention Mvl chr3R - chr3R_16883674_16883737 chr3R_16883673_16883674;chr3R_16883737_16883738 chr3R_16883509_16883673;chr3R_16883738_16883922 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 2.13 0.00 0.00 23.08 0.00 0.00 0.00 0.00 0.00 2.27 4.62 1.75 7.84 0.00 0.00 0.00 0.00 0.00 1.61 1.37 0.00 1.33 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Eph,I_chr4_631523_634240,I_chr4_631555_631910,I_chr4_631643_631910,I_chr4_639690_640473,I_chr4_640676_640879,RI_chr4_640804_640863 chr4 + chr4_631643_631910;chr4_631523_631910 chr4_631555_631910 chr4_631911_632010;chr4_631455_631522 0.00 NA 0.00 5.88 NA 0.00 0.00 0.00 0.00 NA NA 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 2.70 NA NA 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA 0.00 NA 0.00 0.00 6.25 NA NA NA 0.00 2.44 NA 0.00 NA NA NA 0.00 NA NA NA N jcn_only_AD 4EHP,RI_chr3R_19927769_19928262,Syx1A chr3R - chr3R_19927769_19929293;chr3R_19927769_19928262 chr3R_19927769_19932546 chr3R_19927676_19927768;chr3R_19932547_19933006 1.51 0.00 0.00 1.16 4.08 0.00 0.00 1.67 1.50 NA NA 1.25 0.00 1.96 1.92 2.38 1.52 2.38 2.04 3.80 NA 3.51 1.59 0.00 0.00 0.00 0.00 4.00 4.55 4.00 0.00 NA 2.22 0.00 0.00 7.14 0.00 3.77 4.55 2.74 NA 1.20 0.00 1.59 3.12 0.00 0.00 3.51 0.00 NA 2.38 4.08 0.00 NA 0.00 0.00 2.50 0.00 K cassette mu2,I_chr3L_1945373_1945436,I_chr3L_1945382_1945647 chr3L - chr3L_1945382_1945647 chr3L_1945382_1945436;chr3L_1945529_1945647 chr3L_1945437_1945528 chr3L_1945282_1945381;chr3L_1945648_1945655 100.00 100.00 100.00 93.75 100.00 100.00 91.67 100.00 100.00 NA 85.71 100.00 100.00 NA 90.00 100.00 100.00 100.00 100.00 93.75 87.50 100.00 100.00 100.00 100.00 100.00 100.00 NA 90.00 100.00 91.67 100.00 100.00 93.75 100.00 87.50 88.89 100.00 100.00 93.75 91.67 93.75 100.00 100.00 100.00 91.67 100.00 100.00 100.00 90.91 100.00 100.00 NA NA 90.00 NA 90.91 94.12 K alternative_donor CG13933,I_chr3L_1773911_1773984 chr3L - chr3L_1773911_1773984 chr3L_1773911_1773980 chr3L_1773811_1773910;chr3L_1773985_1774084 100.00 100.00 100.00 96.00 100.00 92.31 90.00 95.65 96.97 NA 90.91 100.00 93.33 93.75 92.86 95.00 100.00 100.00 93.75 97.06 100.00 100.00 100.00 100.00 100.00 93.33 100.00 90.00 92.31 100.00 95.00 100.00 100.00 95.45 NA 100.00 100.00 100.00 93.75 100.00 NA 100.00 88.89 92.31 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA 94.12 100.00 100.00 NA K jcn_only_AD CG40263,F_chr2RHet_1265687_1293040,RI_chr2RHet_1324541_1328409 chr2RHet - chr2RHet_1265687_1286305;chr2RHet_1265687_1291241 chr2RHet_1265687_1286307 chr2RHet_1265587_1265686 22.96 NA NA NA NA NA NA 25.93 3.70 NA NA NA NA NA NA NA NA NA NA 17.07 NA NA NA NA NA NA NA NA NA NA 36.00 NA NA 50.00 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Cnx99A,I_chr3R_25144335_25145173,I_chr3R_25145243_25145309,I_chr3R_25145256_25145426 chr3R - chr3R_25145256_25145309 chr3R_25145255_25145256;chr3R_25145309_25145310 chr3R_25145174_25145255;chr3R_25145310_25145319 84.47 87.72 83.54 87.20 86.67 84.72 92.03 80.38 91.30 68.97 80.00 88.37 91.43 91.59 83.74 91.52 83.59 81.25 86.82 85.82 80.90 42.11 96.00 88.57 87.50 90.00 85.19 82.14 73.68 78.38 86.92 72.55 65.91 83.05 71.43 81.82 96.67 94.44 85.29 70.16 73.91 83.73 88.37 67.92 66.67 66.67 91.67 65.48 84.21 95.45 96.88 82.86 65.22 NA 85.47 86.67 97.44 70.67 K intron_retention CG9003,I_chr2R_7531685_7531831,RI_chr2R_7538713_7538828 chr2R - chr2R_7538730_7538828 chr2R_7538729_7538730;chr2R_7538828_7538829 chr2R_7538320_7538729;chr2R_7538829_7538928 92.86 91.67 90.00 88.00 100.00 NA 88.89 100.00 97.44 NA 88.89 95.00 93.33 100.00 100.00 100.00 100.00 88.89 91.67 97.22 100.00 86.96 94.44 91.67 NA 100.00 87.50 90.00 NA 92.86 100.00 NA 76.92 100.00 80.00 69.23 80.00 100.00 NA 90.91 NA 100.00 92.86 87.50 NA 91.67 83.33 100.00 95.45 NA 93.75 69.23 NA NA 92.31 NA NA NA N alternative_acceptor alt chr3R - chr3R_13500526_13500610 chr3R_13500546_13500610 chr3R_13500611_13500733;chr3R_13499903_13500525 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.87 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention l(1)G0222,I_chrX_17473084_17473137 chrX - chrX_17472801_17473137 chrX_17472800_17472801;chrX_17473137_17473138 chrX_17472708_17472800;chrX_17473138_17473215 17.66 22.22 22.73 18.00 20.00 20.00 23.68 16.67 22.64 NA 19.05 10.87 16.00 14.29 17.24 21.88 13.04 16.67 32.00 34.00 11.11 20.00 22.22 11.76 16.00 5.71 25.00 14.29 10.71 8.00 19.23 15.38 16.67 19.23 22.73 9.09 18.75 25.00 21.43 11.32 5.56 24.14 18.18 14.29 NA 12.50 31.25 9.68 17.31 13.04 30.43 13.04 22.22 NA 24.14 25.00 12.50 11.76 K alternative_donor CG1657 chrX + chrX_11219544_11222056;chrX_11219635_11222056 chrX_11219604_11222056 chrX_11222057_11222225;chrX_11219475_11219543 0.00 0.00 0.00 0.00 NA NA NA 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 N alternative_acceptor CG32809,I_chrX_1576815_1577129,I_chrX_1577031_1577129,CEI_chrX_1579569_1579679,RI_chrX_1585391_1586471,I_chrX_1589508_1589564 chrX - chrX_1569282_1569351 chrX_1569288_1569351 chrX_1569352_1571098;chrX_1569042_1569281 90.91 90.91 100.00 92.31 NA 87.50 91.67 86.67 94.44 100.00 NA 88.89 90.00 90.00 91.67 95.45 100.00 NA 90.91 100.00 88.89 60.00 100.00 91.67 100.00 88.89 90.91 NA NA 73.33 94.44 87.50 85.71 100.00 NA 91.67 90.91 NA 100.00 86.67 77.78 100.00 90.91 NA NA 95.00 100.00 92.86 83.33 77.78 92.31 100.00 NA 87.50 90.91 91.67 90.91 81.82 K intron_retention CG17598 chrX - chrX_21935505_21938689 chrX_21935504_21935505;chrX_21938689_21938690 chrX_21935436_21935504;chrX_21938690_21938827 95.00 95.00 94.44 95.24 100.00 90.91 92.00 100.00 94.87 100.00 100.00 96.77 94.74 100.00 100.00 100.00 100.00 100.00 95.65 95.00 100.00 93.33 84.38 96.15 94.12 93.75 100.00 100.00 75.00 83.33 91.67 96.15 90.00 100.00 76.47 100.00 87.50 100.00 85.71 96.97 94.44 94.74 92.86 89.66 84.21 85.19 95.83 84.21 91.67 95.00 89.29 84.21 100.00 100.00 95.24 88.00 95.83 96.00 K intron_retention CG18428,I_chr3R_19935311_19935390 chr3R + chr3R_19935311_19935377 chr3R_19935310_19935311;chr3R_19935377_19935378 chr3R_19935211_19935310;chr3R_19935378_19935732 55.91 41.67 66.67 71.43 60.00 46.15 52.94 40.91 60.00 NA 50.00 47.37 36.36 63.64 54.55 58.82 NA 50.00 73.33 59.26 30.77 46.15 44.44 63.64 NA 38.46 NA 69.23 73.33 30.00 50.00 75.00 57.14 36.84 NA 56.25 70.59 35.71 40.00 55.56 71.43 46.88 87.50 58.82 59.09 50.00 58.82 47.37 59.09 52.17 50.00 50.00 61.54 61.54 57.14 60.00 43.48 62.50 K intron_retention lark,noncoding_11093,REI_chr3L_7332718_7333975,RI_chr3L_7334219_7334452 chr3L + chr3L_7332718_7333061 chr3L_7332717_7332718;chr3L_7333061_7333062 chr3L_7332618_7332717;chr3L_7333062_7333870 36.49 50.00 NA 70.00 22.22 NA NA 47.06 38.71 38.46 NA 45.45 NA NA 17.65 NA 54.55 NA 53.33 50.00 NA 17.24 28.57 27.78 33.33 NA 42.86 47.06 22.22 31.25 54.55 42.11 25.81 38.89 25.00 21.74 26.67 40.00 28.57 32.26 25.00 48.48 NA 42.86 17.50 33.33 33.33 39.13 48.00 32.00 41.67 37.50 16.67 46.15 54.55 32.00 18.52 35.48 K intron_retention Gp150,I_chr2R_18205316_18205386,RI_chr2R_18206133_18212679,I_chr2R_18211853_18212679,RI_chr2R_18212600_18212679,I_chr2R_18213233_18213308 chr2R + chr2R_18205243_18205338 chr2R_18205242_18205243;chr2R_18205338_18205339 chr2R_18205216_18205242;chr2R_18205339_18205459 100.00 100.00 100.00 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.82 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 K intron_retention squ,grp,CG33552,E_chr2L_16685727_16690952,I_chr2L_16690153_16690901,I_chr2L_16690752_16690901,I_chr2L_16690809_16690901,I_chr2L_16697644_16698961,R_chr2L_16698072_16698138 chr2L + chr2L_16680277_16690901 chr2L_16680276_16680277;chr2L_16690901_16690902 chr2L_16680076_16680276;chr2L_16690902_16691001 0.00 0.00 3.39 0.00 0.00 0.00 2.86 0.00 1.83 0.00 4.08 2.60 0.00 0.00 3.17 0.00 3.33 0.00 0.00 1.10 6.00 0.00 1.37 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 0.00 2.27 0.00 2.68 2.56 0.00 0.00 2.56 0.00 1.52 1.80 0.00 0.00 0.00 0.00 0.00 1.82 2.22 2.22 0.00 K multi_cassette CG33558,RI_chr2R_2813804_2816013,I_chr2R_2813804_2817753,F_chr2R_2814298_2814894,I_chr2R_2814327_2817753,I_chr2R_2815816_2816013,I_chr2R_2816342_2817327,I_chr2R_2816779_2817354,RI_chr2R_2817876_2819347,CREI_chr2R_2832933_2850384 chr2R - chr2R_2813804_2817753 chr2R_2813804_2813977;chr2R_2814097_2814174;chr2R_2814327_2814894;chr2R_2815654_2816013;chr2R_2816342_2817327;chr2R_2817604_2817753 chr2R_2813978_2814096;chr2R_2814175_2814326;chr2R_2814895_2815653;chr2R_2816014_2816341;chr2R_2817328_2817603 chr2R_2813704_2813803;chr2R_2817754_2817762 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 100.00 100.00 87.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_acceptor Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21124615_21125346 chr2L_21124615_21125316 chr2L_21124594_21124614;chr2L_21125347_21125439 80.00 NA NA 53.85 NA NA NA 66.67 85.71 NA NA 100.00 NA NA NA NA NA NA NA NA NA 85.71 NA NA NA NA 66.67 NA NA NA 85.71 NA NA 80.00 NA NA NA NA NA NA NA 77.78 NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA NA NA K alternative_donor mod(r),I_chrX_515823_515874,RI_chrX_515831_515923,I_chrX_516392_517480 chrX + chrX_515823_515874 chrX_515831_515874 chrX_515875_515974;chrX_515763_515822 100.00 100.00 100.00 90.91 87.50 100.00 93.75 100.00 94.74 NA 100.00 94.12 100.00 NA 100.00 92.31 NA 88.89 100.00 100.00 100.00 NA 100.00 86.67 NA 90.00 100.00 NA NA 100.00 93.75 100.00 NA 100.00 NA NA 94.12 92.86 93.33 100.00 NA 95.00 100.00 100.00 NA 100.00 92.86 NA 100.00 100.00 100.00 100.00 92.31 90.00 100.00 100.00 96.15 100.00 N alternative_donor I_chr2R_17543813_17543881,CG10320 chr2R + chr2R_17545799_17545850;chr2R_17545767_17545850;chr2R_17545615_17545850;chr2R_17545781_17545850;chr2R_17545690_17545850 chr2R_17545686_17545850 chr2R_17545851_17545985;chr2R_17545613_17545614 7.04 8.57 2.27 5.26 1.85 3.70 5.77 1.52 2.83 10.00 2.63 2.99 8.57 2.78 1.45 7.69 4.55 2.33 2.08 3.33 2.56 10.00 36.36 27.27 10.00 4.76 30.77 20.00 7.69 25.00 4.44 7.69 4.00 1.47 11.11 18.18 17.39 12.50 21.05 17.39 5.88 4.10 4.76 15.00 5.17 8.33 15.00 5.56 7.04 21.43 14.29 9.09 6.67 11.11 3.08 22.73 23.33 3.57 K jcn_only_AD CG9140,I_chr2L_6062436_6062583 chr2L - chr2L_6062436_6062641 chr2L_6062436_6062583 chr2L_6062336_6062435;chr2L_6062642_6062683 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.55 0.00 0.00 0.65 0.00 0.00 0.65 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 1.65 0.00 0.00 1.10 0.00 0.00 0.77 0.96 0.00 0.00 1.41 0.00 0.30 0.00 0.82 0.68 0.00 0.26 0.00 0.00 0.56 0.95 0.00 0.87 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 K jcn_only_AA cv-c,RI_chr3R_10258928_10265129,RI_chr3R_10301040_10306363,RI_chr3R_10306635_10307255 chr3R - chr3R_10236210_10242155 chr3R_10236231_10242155 chr3R_10242156_10242755;chr3R_10235539_10236209 1.75 2.94 2.27 2.74 0.00 0.00 0.00 2.60 2.38 0.00 0.00 2.02 2.50 0.00 0.00 2.08 0.00 2.00 0.00 1.83 0.00 0.94 2.29 1.23 5.08 7.69 0.99 NA 0.00 0.00 1.79 0.00 0.00 2.46 3.39 4.55 0.74 0.00 1.75 1.20 NA 2.48 4.00 0.00 NA 0.00 2.22 2.50 1.72 10.20 0.00 2.08 3.57 0.00 2.60 5.41 0.00 NA K alternative_acceptor Pitslre,I_chr3L_20764965_20765781,I_chr3L_20764965_20766192,I_chr3L_20764965_20766212,I_chr3L_20766064_20766192,I_chr3L_20766064_20766215,RI_chr3L_20766064_20766893,I_chr3L_20766311_20766664,I_chr3L_20766311_20766893,I_chr3L_20766773_20766893 chr3L + chr3L_20764965_20765704;chr3L_20764965_20766893 chr3L_20764965_20766215 chr3L_20764896_20764964;chr3L_20766894_20766993 4.88 4.00 14.29 16.67 9.09 16.67 9.52 33.33 4.88 0.00 7.69 6.25 7.14 11.76 25.00 13.04 8.33 6.67 14.29 15.15 22.22 7.89 2.38 2.38 0.00 9.09 3.03 1.79 2.86 3.33 5.26 0.00 0.00 14.81 3.85 3.57 1.89 2.56 4.65 6.56 5.88 7.69 18.18 2.94 4.76 4.17 3.85 2.70 5.88 3.70 2.22 0.00 0.00 0.00 5.26 0.00 0.00 5.88 K jcn_only_AD Ilp6,RI_chrX_2226173_2226308,I_chrX_2226173_2226571 chrX - chrX_2226173_2227352;chrX_2226173_2226571;chrX_2226173_2226308 chrX_2226173_2226376 chrX_2226073_2226172;chrX_2227353_2227719 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.71 0.99 3.70 1.85 0.00 0.00 0.00 1.15 0.00 0.00 2.99 0.00 0.76 0.00 6.25 0.00 0.00 0.00 0.00 0.00 3.57 0.00 0.00 0.00 4.08 5.97 0.00 0.00 0.00 0.00 1.33 0.00 3.17 3.57 0.00 0.00 0.00 1.79 2.82 0.00 0.00 0.00 1.16 0.92 2.17 0.00 0.00 2.15 0.00 2.63 4.55 K cassette CG4300 chr3L - chr3L_12267212_12269989 chr3L_12267212_12268175;chr3L_12268288_12269989 chr3L_12268176_12268287 chr3L_12267103_12267211;chr3L_12269990_12270349 0.00 0.00 3.23 2.56 0.00 3.85 2.63 0.00 0.00 0.00 3.33 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 1.54 1.33 1.67 5.88 0.00 5.26 0.00 0.00 0.00 0.00 5.56 1.72 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG42574,I_chr3R_618802_618939,I_chr3R_621546_625413 chr3R - chr3R_618785_618939 chr3R_618802_618939 chr3R_618940_619039;chr3R_618702_618784 0.00 0.00 0.00 0.00 3.85 0.00 0.00 2.17 0.00 0.00 0.00 0.81 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 1.40 0.00 0.00 0.00 0.00 0.72 0.00 1.03 0.00 0.00 1.80 1.18 0.00 1.18 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 2.13 0.00 1.22 0.00 0.00 0.96 0.00 0.00 0.00 1.56 0.00 0.00 1.82 K intron_retention plx,noncoding_14842 chr3R + chr3R_1511993_1512866 chr3R_1511992_1511993;chr3R_1512866_1512867 chr3R_1511864_1511992;chr3R_1512867_1512877 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA 100.00 94.74 NA 100.00 100.00 NA NA 92.86 NA NA 100.00 K alternative_donor phtf,I_chr2R_2629598_2630209 chr2R + chr2R_2631045_2631097 chr2R_2631050_2631097 chr2R_2631098_2632041;chr2R_2630700_2631044 87.50 91.67 NA 91.67 100.00 NA 85.71 88.24 89.47 90.91 NA 80.00 100.00 100.00 90.91 71.43 NA 88.89 87.50 80.95 88.89 82.35 83.33 93.33 63.64 87.50 92.86 85.71 NA 83.33 71.43 NA 85.71 88.24 NA 90.91 84.62 100.00 78.57 78.95 NA 84.62 85.71 91.67 90.91 63.64 NA 88.24 80.00 66.67 87.50 88.89 88.89 NA 80.00 80.00 100.00 81.25 K multi_cassette CG30118,I_chr2R_14320281_14325712,I_chr2R_14325118_14325712 chr2R - chr2R_14320281_14325712 chr2R_14320281_14324101;chr2R_14324234_14325079;chr2R_14325118_14325444;chr2R_14325483_14325712 chr2R_14324102_14324233;chr2R_14325080_14325117;chr2R_14325445_14325482 chr2R_14320181_14320280;chr2R_14325713_14325780 87.50 100.00 87.50 92.86 83.33 85.71 60.00 100.00 91.67 66.67 100.00 100.00 75.00 80.00 87.50 90.00 83.33 100.00 100.00 83.33 100.00 70.00 85.71 87.50 75.00 80.00 100.00 75.00 33.33 83.33 76.92 80.00 88.89 100.00 100.00 NA 88.89 60.00 87.50 88.89 83.33 92.86 100.00 63.64 85.71 90.91 85.71 90.91 82.35 77.78 85.71 100.00 100.00 80.00 87.50 100.00 85.71 100.00 K jcn_only_AA RpL34a chr3R - chr3R_21884774_21884956 chr3R_21884777_21884956 chr3R_21884957_21884989;chr3R_21884702_21884773 64.08 NA 67.35 63.22 65.71 70.00 NA 63.64 55.56 NA 64.52 66.67 72.73 NA 46.15 50.00 72.50 70.83 70.77 64.52 63.64 62.50 NA 78.57 50.00 57.14 NA 61.29 NA 71.43 58.14 68.00 59.76 64.84 NA NA 76.00 75.00 NA 61.15 51.61 68.45 78.38 57.89 56.86 42.31 65.00 55.56 74.23 NA NA NA 49.43 NA 68.57 NA 52.56 52.38 K intron_retention UbcD6,I_chr3R_776269_776333 chr3R - chr3R_776127_776188 chr3R_776126_776127;chr3R_776188_776189 chr3R_774477_776126;chr3R_776189_776268 0.00 0.00 0.51 0.57 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.55 1.34 0.00 0.00 0.00 0.00 0.00 0.00 0.51 0.00 0.38 0.00 0.00 0.00 0.00 1.01 4.41 2.43 0.00 0.00 0.00 0.30 0.66 0.00 1.03 0.64 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.38 0.69 0.00 0.00 0.33 0.42 0.00 0.78 0.00 0.00 0.00 0.00 0.00 K intron_retention RI_chr3R_7061265_7061322,CG31441,CG31388 chr3R + chr3R_7063063_7063121 chr3R_7063062_7063063;chr3R_7063121_7063122 chr3R_7062272_7063062;chr3R_7063122_7063242 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 3.85 NA NA 0.00 0.00 NA 0.00 0.00 2.27 0.00 NA 0.00 0.00 0.00 0.00 4.55 NA NA NA 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 5.56 NA 4.76 NA NA NA 0.00 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA N jcn_only_AA MRP,F_chr2L_12727117_12736035 chr2L + chr2L_12719241_12724205 chr2L_12719241_12722354 chr2L_12719072_12719240 100.00 100.00 100.00 95.38 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Cip4,I_chr3L_4363128_4363769,I_chr3L_4363386_4363987 chr3L - chr3L_4324451_4324861 chr3L_4324450_4324451;chr3L_4324861_4324862 chr3L_4324284_4324450;chr3L_4324862_4324996 9.09 6.90 17.65 10.87 12.50 16.67 18.84 17.78 12.16 2.50 NA 11.32 13.33 NA 26.32 21.74 22.22 4.35 22.22 5.13 NA 0.00 3.92 10.81 9.09 16.67 9.38 NA 0.00 0.00 15.00 10.53 4.35 13.16 8.70 14.29 0.00 0.00 9.52 11.43 8.00 10.53 11.76 2.27 3.23 5.41 6.06 0.00 16.18 0.00 2.17 0.00 0.00 4.00 12.50 0.00 2.50 1.37 K intron_retention CG1646,I_chr3R_24640561_24640869,I_chr3R_24641816_24641874 chr3R + chr3R_24641449_24641521 chr3R_24641448_24641449;chr3R_24641521_24641522 chr3R_24641204_24641448;chr3R_24641522_24641682 92.31 94.29 92.00 99.24 94.34 91.36 90.91 98.13 94.70 85.42 89.06 92.86 95.56 97.33 97.14 93.20 92.00 93.55 93.42 94.04 91.18 94.44 97.44 94.29 89.47 93.33 96.40 92.31 67.86 88.57 83.75 94.17 92.99 93.81 91.76 81.48 90.72 90.77 90.91 83.69 81.98 92.81 96.00 86.92 82.35 89.06 92.86 89.19 96.75 86.96 85.11 92.45 90.91 87.93 95.06 95.06 91.14 89.91 K intron_retention CG14711,CG18764,CG14712 chr3R + chr3R_7450214_7450271 chr3R_7450213_7450214;chr3R_7450271_7450272 chr3R_7450079_7450213;chr3R_7450272_7450382 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 6.90 0.00 0.00 0.00 0.00 NA 0.00 0.00 2.08 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 5.00 0.00 0.00 3.33 5.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RpL22,noncoding_21234 chrX - chrX_658956_659116 chrX_658955_658956;chrX_659116_659117 chrX_658833_658955;chrX_659117_659185 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.40 0.75 0.21 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.23 K intron_retention prominin-like,I_chr3L_3121200_3123087 chr3L - chr3L_3117769_3117833 chr3L_3117768_3117769;chr3L_3117833_3117834 chr3L_3117599_3117768;chr3L_3117834_3117973 41.67 50.00 26.32 57.89 60.00 46.15 56.25 52.63 34.21 54.55 NA 43.48 50.00 36.36 36.84 39.13 NA 30.77 NA 44.12 NA 43.75 64.71 38.10 42.86 NA 61.11 41.67 41.67 NA 28.57 NA 41.67 50.00 37.50 36.36 46.43 28.57 50.00 32.26 60.00 37.93 63.64 35.71 27.59 NA 40.00 44.44 39.29 41.67 36.84 40.00 40.00 NA 53.33 30.77 25.00 64.71 K jcn_only_AD RpL3,I_chr3R_7047694_7047896,I_chr3R_7047774_7047896,E_chr3R_7047964_7050565,I_chr3R_7049970_7050189 chr3R + chr3R_7047694_7047896;chr3R_7047655_7047896 chr3R_7047774_7047896 chr3R_7047897_7047963;chr3R_7047619_7047654 0.00 0.14 0.00 0.03 0.00 0.00 0.00 0.02 0.00 0.35 0.00 0.04 0.11 0.05 0.02 0.00 0.00 0.00 0.00 0.04 0.00 0.12 1.27 1.01 0.00 0.06 1.41 0.00 0.00 1.14 0.17 0.11 0.00 0.03 0.53 0.00 0.21 0.00 0.22 0.31 0.19 0.01 0.00 0.00 0.00 0.39 0.00 0.25 0.06 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 K intron_retention CG8029,I_chr2R_5095165_5095256 chr2R + chr2R_5095165_5095252 chr2R_5095164_5095165;chr2R_5095252_5095253 chr2R_5095083_5095164;chr2R_5095253_5095264 8.33 7.45 8.05 21.36 6.56 10.67 36.69 18.49 4.89 2.70 10.34 9.03 1.67 7.69 11.76 8.33 9.46 8.86 8.05 10.87 10.61 2.80 9.42 7.55 19.35 29.17 16.29 14.44 20.25 5.26 6.10 5.48 4.44 9.62 10.00 13.21 3.51 7.37 8.13 3.35 9.64 12.59 10.94 2.66 2.38 6.50 11.84 1.65 10.17 2.88 11.85 2.56 6.19 14.81 8.94 1.94 6.36 3.51 K cassette Amph,I_chr2R_8498227_8498492 chr2R + chr2R_8495684_8498083 chr2R_8495684_8496673;chr2R_8497142_8498083 chr2R_8496674_8497141 chr2R_8495584_8495683;chr2R_8498084_8498226 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 97.96 100.00 100.00 100.00 100.00 98.00 100.00 99.31 100.00 97.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention Vha100-2 chr3R - chr3R_14219132_14222434 chr3R_14219131_14219132;chr3R_14222434_14222435 chr3R_14218994_14219131;chr3R_14222435_14222873 15.38 NA NA 11.76 NA NA 14.29 14.29 35.29 NA NA NA NA NA 28.57 NA NA NA NA 17.65 NA NA 21.43 NA NA NA NA NA NA NA NA NA NA 15.38 NA NA NA NA NA NA NA 12.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N jcn_only_AD Inos,I_chr2R_3344353_3345211 chr2R - chr2R_3344353_3346113;chr2R_3344353_3346212;chr2R_3344353_3344799 chr2R_3344353_3345211 chr2R_3344253_3344352;chr2R_3346213_3346215 0.25 0.24 0.08 0.16 0.40 0.39 0.14 0.19 0.41 0.06 0.52 0.43 0.28 0.00 0.14 0.00 0.11 0.39 0.00 0.09 0.22 0.05 0.19 0.24 0.41 0.07 0.23 0.23 0.48 0.20 0.82 0.49 0.19 0.43 0.26 0.24 0.07 0.25 0.36 0.29 0.29 0.29 0.37 0.11 0.34 0.25 0.20 0.05 0.41 0.50 0.39 0.00 0.27 0.28 0.38 0.40 0.52 0.52 K intron_retention CG31229,CG7702 chr3R + chr3R_14493945_14494330 chr3R_14493944_14493945;chr3R_14494330_14494331 chr3R_14493637_14493944;chr3R_14494331_14494524 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.68 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 K intron_retention CG3386,CG3371,CG3344,CG32483,Vti1 chr3L - chr3L_684692_685027 chr3L_684691_684692;chr3L_685027_685028 chr3L_682875_684691;chr3L_685028_685686 0.00 0.00 1.12 4.35 0.00 0.00 2.20 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 1.03 0.00 0.00 2.82 0.00 0.00 0.00 1.03 0.00 1.32 0.00 3.61 7.34 0.00 0.00 1.56 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.93 0.65 0.00 0.00 0.76 0.71 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 K intron_retention CG31531,I_chr3R_485548_485960,I_chr3R_485608_485960,noncoding_14584,I_chr3R_486122_506500,I_chr3R_496573_505950,I_chr3R_523978_526879 chr3R + chr3R_485399_485960 chr3R_485398_485399;chr3R_485960_485961 chr3R_485382_485398;chr3R_485961_486060 92.86 88.89 93.75 95.45 100.00 91.67 84.62 77.78 95.45 95.00 100.00 82.14 92.86 94.12 100.00 82.14 94.12 100.00 95.65 97.06 100.00 87.88 84.85 82.61 92.31 92.86 95.83 84.21 95.65 94.44 84.21 100.00 87.50 96.00 88.24 94.44 91.43 86.21 94.74 90.91 100.00 91.43 92.31 96.97 100.00 92.86 NA 96.43 88.46 83.33 88.46 92.00 100.00 NA 95.00 100.00 90.91 87.50 K intron_retention dre4,I_chr3L_1875590_1875651,F_chr3L_1877432_1877517 chr3L - chr3L_1875916_1876109 chr3L_1875915_1875916;chr3L_1876109_1876110 chr3L_1875652_1875915;chr3L_1876110_1876288 0.49 0.00 0.00 0.56 0.54 0.00 0.00 0.60 0.59 0.00 0.00 0.72 0.00 0.60 0.80 0.46 1.05 1.03 0.91 0.23 0.51 0.93 0.00 0.28 0.00 0.43 0.27 0.35 1.11 0.00 0.00 0.00 0.87 0.29 1.10 0.00 0.73 0.67 0.44 0.85 1.94 0.63 0.57 0.36 1.07 0.49 0.00 1.39 0.48 0.74 0.51 1.04 0.00 0.00 0.78 0.00 0.00 1.85 K alternative_donor I_chr2L_476332_525391,ush chr2L + chr2L_539247_539309 chr2L_539250_539309 chr2L_539310_539452;chr2L_537863_539246 99.11 96.55 97.30 95.74 100.00 100.00 100.00 97.87 98.53 100.00 100.00 100.00 100.00 100.00 100.00 97.78 96.00 100.00 97.37 99.11 96.30 97.96 98.94 98.65 100.00 96.67 100.00 100.00 100.00 98.31 100.00 100.00 100.00 100.00 100.00 98.28 98.77 100.00 100.00 98.81 98.39 98.41 95.83 98.70 100.00 97.85 100.00 100.00 100.00 98.80 100.00 100.00 98.21 98.18 97.92 100.00 96.55 98.86 K intron_retention slik,I_chr2R_20286707_20287372,REI_chr2R_20287415_20287722,I_chr2R_20288968_20289185,I_chr2R_20289332_20290093 chr2R - chr2R_20281038_20283565 chr2R_20281037_20281038;chr2R_20283565_20283566 chr2R_20281011_20281037;chr2R_20283566_20283698 92.31 100.00 80.00 93.75 100.00 90.91 95.24 95.65 92.31 NA 86.67 86.67 94.44 92.31 100.00 95.45 92.86 92.31 100.00 88.46 100.00 NA 82.35 90.91 NA 90.00 90.00 NA 88.89 100.00 100.00 100.00 100.00 93.33 90.00 83.33 NA NA 71.43 91.18 100.00 92.86 100.00 91.67 NA 78.57 91.67 90.91 93.33 NA 76.47 NA NA NA 94.74 NA 90.00 92.31 K intron_retention CG12054 chr3R + chr3R_27052801_27054418 chr3R_27052800_27052801;chr3R_27054418_27054419 chr3R_27052289_27052800;chr3R_27054419_27055127 36.59 36.59 25.00 54.55 41.67 45.16 54.00 39.22 37.23 47.83 31.25 37.68 30.23 26.32 26.83 52.00 36.36 36.36 35.48 44.05 33.33 36.97 33.33 29.63 43.33 41.38 51.28 62.86 41.38 36.84 37.14 50.00 41.18 39.06 28.12 76.67 27.12 33.33 35.71 35.00 32.00 36.07 36.84 39.58 40.91 29.41 31.25 23.91 28.95 35.48 28.99 39.13 25.81 29.63 37.84 35.71 35.48 40.00 K jcn_only_AD Deaf1 chr3L + chr3L_19813102_19821416 chr3L_19813111_19821416 chr3L_19821417_19822045;chr3L_19812312_19813101 69.62 75.38 80.00 70.00 65.38 55.56 72.09 62.22 62.34 80.49 71.43 66.22 70.83 69.23 71.43 63.33 68.18 64.71 81.58 60.00 64.71 75.82 69.57 69.39 63.79 62.50 61.54 71.93 73.58 73.02 66.67 71.74 69.44 69.77 66.13 57.81 69.67 71.83 63.16 52.11 61.22 63.53 70.83 69.81 74.29 67.21 66.22 72.86 75.00 55.84 72.41 79.55 72.31 70.83 75.61 69.62 73.53 65.12 K alternative_acceptor CG14222,I_chrX_19515684_19515800,I_chrX_19515698_19515809,e(y)3 chrX - chrX_19515684_19515809 chrX_19515698_19515809 chrX_19515810_19515900;chrX_19515598_19515683 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.87 0.75 0.00 0.00 1.02 0.00 0.00 1.54 0.00 0.00 1.69 0.00 0.00 2.27 0.00 0.00 1.54 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 1.02 2.94 0.00 2.13 0.00 1.54 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.80 2.27 0.00 0.00 0.00 0.00 0.00 1.32 1.27 1.27 K intron_retention I_chr2L_114992_156735,I_chr2L_114992_132475,RI_chr2L_114992_155545,RI_chr2L_114992_155566,I_chr2L_114992_155637,I_chr2L_114992_156175,Gs1,I_chr2L_132256_132324,RI_chr2L_132256_132482 chr2L + chr2L_132256_132475 chr2L_132255_132256;chr2L_132475_132476 chr2L_132156_132255;chr2L_132476_132575 0.00 NA NA NA NA NA NA 14.29 0.00 0.00 NA 4.17 NA NA 0.00 14.29 NA NA 0.00 0.00 NA 30.77 NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA 4.76 4.76 NA NA NA NA NA NA NA NA 0.00 K jcn_only_AA Nhe2,I_chr2L_21122390_21122912 chr2L + chr2L_21128063_21128778 chr2L_21128063_21128739 chr2L_21127850_21128062;chr2L_21128779_21129082 100.00 100.00 100.00 100.00 100.00 100.00 98.63 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K intron_retention l(2)35Di,RI_chr2L_15750643_15750721 chr2L - chr2L_15749852_15750549 chr2L_15749851_15749852;chr2L_15750549_15750550 chr2L_15749487_15749851;chr2L_15750550_15750642 0.00 0.00 0.00 5.63 0.00 0.00 1.61 0.00 1.06 0.00 0.00 1.23 0.00 0.00 0.00 1.41 0.00 0.00 0.00 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 1.26 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 1.44 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD bdg,I_chr2R_11824086_11824186,CEI_chr2R_11826763_11827279 chr2R - chr2R_11815130_11819241 chr2R_11815130_11819028 chr2R_11814250_11815129;chr2R_11819242_11819419 11.76 9.09 6.52 13.73 18.52 8.89 12.50 10.13 9.62 2.78 5.41 10.99 9.09 11.76 8.20 8.86 12.00 5.26 14.29 22.08 12.50 23.19 5.13 18.07 12.77 2.38 17.24 11.43 19.57 13.95 12.00 10.00 28.57 11.76 9.23 14.29 15.62 5.36 12.73 8.24 19.35 10.31 6.82 18.57 8.70 10.87 2.56 15.38 14.43 11.36 3.19 20.83 18.18 NA 7.69 14.63 21.88 17.24 K alternative_donor CG1970,I_chr4_590970_591030,I_chr4_591160_591222 chr4 - chr4_591160_591229 chr4_591160_591222 chr4_591060_591159;chr4_591230_591322 0.84 0.76 0.00 1.28 1.43 1.64 0.80 0.00 0.00 1.52 1.82 0.84 1.06 0.00 0.71 0.72 0.00 0.89 0.94 1.72 1.12 0.00 1.34 0.57 2.47 0.00 1.03 1.67 0.00 3.49 4.81 1.54 1.14 1.31 0.00 0.00 0.56 0.65 2.22 1.54 0.00 0.39 1.00 2.46 2.30 1.01 0.79 0.00 0.41 0.00 1.12 2.33 1.09 0.00 0.75 0.81 0.76 0.00 K cassette CG11486,RE_chr3L_3084894_3085203 chr3L + chr3L_3071190_3073277 chr3L_3071190_3073080;chr3L_3073150_3073277 chr3L_3073081_3073149 chr3L_3071183_3071189;chr3L_3073278_3073478 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA N mutually_exclusive unc-13,I_chr4_897821_902468,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_897821_899476,chr4_899619_903586;chr4_897821_903242,chr4_903350_903586 chr4_897821_902468,chr4_902576_903586 chr4_899477_899618;chr4_903243_903349 chr4_902469_902575 chr4_897721_897820;chr4_903587_903686 16.67 28.57 36.36 21.05 0.00 16.67 10.42 40.91 9.38 0.00 NA 20.00 18.18 15.38 25.00 21.43 28.57 10.00 13.64 16.67 28.57 7.14 15.38 20.00 27.27 10.53 16.67 30.00 7.14 18.18 10.34 16.67 6.25 27.27 16.67 6.90 NA 14.29 0.00 21.43 18.18 14.29 26.67 30.77 16.67 20.00 12.50 11.11 8.11 16.67 13.33 16.67 0.00 NA 20.00 NA 14.29 0.00 K intron_retention CG1815,I_chr3R_27501104_27501167,I_chr3R_27501104_27501176 chr3R + chr3R_27501104_27501176 chr3R_27501103_27501104;chr3R_27501176_27501177 chr3R_27501004_27501103;chr3R_27501177_27501267 97.22 100.00 97.78 98.53 100.00 100.00 96.36 94.37 98.82 91.30 88.57 92.68 100.00 97.44 97.92 98.28 97.22 100.00 100.00 97.83 96.00 93.75 96.67 100.00 97.22 95.65 100.00 100.00 96.08 96.00 95.00 93.88 92.13 97.18 100.00 98.04 95.52 97.14 98.48 95.40 96.30 97.98 91.67 97.83 90.91 92.65 100.00 92.31 98.77 96.30 98.11 97.14 97.22 86.21 98.41 97.56 91.43 94.44 K alternative_acceptor CG5646,I_chr3R_23386250_23386484,I_chr3R_23386287_23386484 chr3R - chr3R_23386220_23386484;chr3R_23386237_23386484;chr3R_23386287_23386484 chr3R_23386250_23386484 chr3R_23386485_23386584;chr3R_23386187_23386219 5.88 5.88 0.00 6.25 0.00 6.25 11.11 4.76 8.33 0.00 0.00 4.55 0.00 6.25 15.00 0.00 0.00 0.00 5.00 0.00 6.67 5.88 3.23 4.17 18.18 0.00 5.71 7.41 4.55 8.70 5.56 13.64 7.69 4.17 8.70 5.56 3.23 5.26 15.38 6.67 6.67 0.00 0.00 9.38 5.88 3.03 5.56 10.71 11.54 12.00 6.25 14.29 9.09 16.67 18.18 15.00 8.33 6.67 K jcn_only_AD Hsc70-3,I_chrX_11699076_11699138,I_chrX_11699076_11699158,I_chrX_11699076_11699260,EI_chrX_11699076_11699573,I_chrX_11699076_11700062 chrX - chrX_11699076_11699321;chrX_11699076_11699335 chrX_11699076_11699923 chrX_11698976_11699075;chrX_11699924_11699938 1.15 2.50 3.57 2.04 1.75 0.00 1.33 1.37 0.00 0.00 3.45 0.79 1.12 2.82 3.17 0.00 0.00 2.00 1.15 3.33 1.89 1.25 2.35 0.94 2.00 2.86 0.00 0.00 0.00 1.72 0.00 2.00 0.00 2.68 0.00 0.00 1.28 3.70 0.00 1.75 0.00 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.06 1.27 0.00 0.00 8.70 1.22 2.00 1.10 0.61 K intron_retention CG4096,I_chrX_5601534_5602019 chrX + chrX_5601534_5601589 chrX_5601533_5601534;chrX_5601589_5601590 chrX_5601528_5601533;chrX_5601590_5601916 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA K jcn_only_AA CG10082,E_chr2R_17533874_17544072,RI_chr2R_17537544_17537615,I_chr2R_17541516_17542279,I_chr2R_17541573_17542279,I_chr2R_17543813_17543881 chr2R + chr2R_17540069_17541147;chr2R_17540069_17540417;chr2R_17540069_17540723 chr2R_17540069_17542279 chr2R_17539942_17540068 96.00 98.44 96.15 94.12 100.00 96.23 100.00 94.92 94.96 100.00 94.59 91.11 100.00 94.74 98.41 92.31 96.30 97.83 97.78 92.79 91.67 84.13 94.74 96.51 100.00 97.78 92.31 98.25 97.83 95.00 87.50 94.87 95.71 97.50 95.00 96.00 95.51 95.65 96.67 96.33 95.83 98.23 92.86 95.24 93.88 96.67 95.56 100.00 97.14 96.88 97.37 95.56 93.33 98.51 100.00 94.29 93.94 96.30 K alternative_donor tou,RI_chr2R_7474644_7475275,I_chr2R_7479681_7480248,RI_chr2R_7479681_7486880,I_chr2R_7479681_7491857,I_chr2R_7504956_7505020 chr2R - chr2R_7479681_7503083 chr2R_7479681_7480463 chr2R_7479581_7479680;chr2R_7503084_7503231 6.52 5.56 4.76 7.32 10.00 8.33 13.04 6.12 11.63 10.53 6.67 6.12 6.25 7.41 8.00 6.90 11.76 5.00 6.25 6.12 5.26 10.71 9.38 5.56 12.50 12.50 9.52 40.00 4.76 6.12 5.71 6.67 6.45 8.70 5.41 5.71 6.67 6.67 4.76 3.85 5.56 7.69 10.53 8.33 10.00 4.35 0.00 3.12 6.52 16.67 5.71 7.69 10.00 0.00 6.25 0.00 0.00 3.33 K intron_retention sec23,I_chr3R_1474873_1475080,I_chr3R_1477727_1478102 chr3R + chr3R_1477525_1478102 chr3R_1477524_1477525;chr3R_1478102_1478103 chr3R_1476976_1477524;chr3R_1478103_1478202 3.26 2.69 2.96 5.42 3.20 2.99 5.50 5.59 2.61 0.65 3.64 5.33 11.11 3.20 5.17 4.19 3.12 3.81 3.39 2.75 3.62 5.71 3.42 3.32 4.02 4.67 3.17 3.50 3.40 1.89 5.10 2.48 3.67 4.62 3.70 2.11 2.48 1.57 2.75 4.89 3.26 3.31 3.31 2.86 3.83 4.58 1.94 12.16 2.35 1.20 2.61 2.56 1.81 2.63 1.91 2.36 1.14 2.27 K jcn_only_AA RpL35,I_chrX_5566913_5567030,I_chrX_5567168_5567220 chrX + chrX_5566909_5567036 chrX_5566909_5567030 chrX_5566840_5566908;chrX_5567037_5567130 99.93 99.96 99.89 99.97 99.93 99.91 99.90 99.90 99.92 100.00 99.89 99.92 99.96 100.00 100.00 99.97 100.00 99.96 100.00 99.88 99.80 99.91 99.85 99.85 100.00 99.96 99.96 99.78 99.89 99.96 99.87 99.93 99.92 100.00 99.95 99.97 100.00 100.00 99.82 99.97 100.00 99.95 99.90 99.93 99.95 99.92 99.97 99.89 99.86 99.93 99.94 100.00 99.88 99.92 99.91 99.84 99.91 99.89 K intron_retention I_chrX_1962457_1964222,CG16903 chrX - chrX_1973678_1973747 chrX_1973677_1973678;chrX_1973747_1973748 chrX_1972865_1973677;chrX_1973748_1974409 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention CG14642,CG34305 chr3R - chr3R_68782_68843 chr3R_68781_68782;chr3R_68843_68844 chr3R_68507_68781;chr3R_68844_68879 15.59 NA 11.11 17.39 6.67 NA 12.50 20.59 12.50 NA NA 19.05 NA NA 18.75 35.71 14.29 15.38 7.41 12.50 12.50 NA NA NA NA NA NA NA NA NA 0.00 16.67 NA 21.74 NA NA NA NA NA 43.75 NA 4.88 NA NA 15.79 NA NA NA 26.09 NA NA NA NA NA 22.22 NA NA NA K intron_retention RpL30,I_chr2L_19008540_19008948,REI_chr2L_19008544_19008723,I_chr2L_19008544_19008918,snoRNA:Me28S-A2113 chr2L - chr2L_19008544_19008948 chr2L_19008543_19008544;chr2L_19008948_19008949 chr2L_19008444_19008543;chr2L_19008949_19009018 0.77 0.62 0.83 0.51 0.77 0.74 0.60 0.62 0.70 0.85 0.68 0.82 0.71 0.79 0.49 0.92 0.54 0.60 0.97 0.75 0.76 4.87 0.87 0.86 1.11 0.58 0.88 1.40 1.04 0.73 3.82 0.88 1.17 0.81 0.94 0.78 0.71 0.90 0.82 0.83 0.98 0.73 0.77 0.64 0.74 0.72 0.77 1.13 1.47 1.13 1.37 0.75 0.71 0.73 0.72 0.68 0.62 0.96 K intron_retention CG3563,I_chr3R_10615218_10615284,F_chr3R_10620137_10620250 chr3R + chr3R_10616975_10619164 chr3R_10616974_10616975;chr3R_10619164_10619165 chr3R_10615279_10616974;chr3R_10619165_10619329 60.00 55.00 66.67 95.00 NA NA 81.82 70.00 74.36 45.83 NA 38.10 77.78 80.00 62.50 71.43 50.00 NA 71.43 47.37 66.67 81.08 63.27 52.00 57.69 72.73 78.26 82.93 65.00 60.87 60.00 47.06 36.84 53.85 61.90 44.83 44.44 57.14 52.00 60.98 62.50 56.25 60.00 56.25 45.45 50.00 44.00 50.00 60.00 66.67 61.54 46.15 61.11 45.83 66.67 45.00 58.82 NA K jcn_only_AA CG3223 chr3R + chr3R_3835352_3835424 chr3R_3835352_3835403 chr3R_3835192_3835351;chr3R_3835425_3835841 0.00 0.00 0.00 1.87 0.00 0.00 0.00 0.00 0.50 1.68 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.71 0.00 0.00 0.68 0.00 1.37 0.00 0.00 2.97 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 0.62 0.00 0.00 0.00 0.00 2.68 0.00 0.00 1.39 0.77 0.00 0.00 0.00 0.00 2.54 0.00 0.00 K jcn_only_AD CG4699 chr3R + chr3R_11619752_11620550;chr3R_11619772_11620550;chr3R_11619776_11620550;chr3R_11619676_11620550 chr3R_11619570_11620550 chr3R_11620551_11621301;chr3R_11619539_11619569 0.00 3.03 0.00 1.49 0.00 0.00 0.00 0.00 1.75 0.00 3.85 1.33 0.00 0.00 4.26 0.00 0.00 0.00 2.17 5.26 0.00 0.00 0.00 0.00 0.00 3.33 0.00 8.33 0.00 0.00 0.00 NA 0.00 3.70 2.13 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 K alternative_donor sw chrX - chrX_20106821_20106881 chrX_20106821_20106877 chrX_20106583_20106820;chrX_20106882_20106940 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention CG33936,CG33937,RI_chr3R_5183458_5183705 chr3R + chr3R_5181426_5182145 chr3R_5181425_5181426;chr3R_5182145_5182146 chr3R_5181230_5181425;chr3R_5182146_5182392 88.89 NA NA NA NA NA 90.00 NA 88.89 NA NA NA NA NA NA NA NA NA NA 92.31 NA NA NA NA NA NA 100.00 88.64 NA NA NA NA 77.78 NA NA NA 100.00 88.89 NA 69.23 NA 88.89 NA NA NA NA NA NA 70.00 NA NA NA NA NA NA NA NA NA N intron_retention CG5004,E_chrX_17024712_17024996 chrX + chrX_17024772_17024996 chrX_17024771_17024772;chrX_17024996_17024997 chrX_17024997_17025096 100.00 100.00 100.00 100.00 100.00 100.00 100.00 74.29 65.52 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 64.29 100.00 62.86 NA 100.00 100.00 100.00 100.00 NA 58.82 100.00 100.00 100.00 65.00 68.97 100.00 100.00 100.00 NA NA 100.00 100.00 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K intron_retention endoA chr3R + chr3R_14734173_14734227 chr3R_14734172_14734173;chr3R_14734227_14734228 chr3R_14732922_14734172;chr3R_14734228_14736070 84.21 85.19 85.42 64.58 84.00 84.85 87.76 96.15 87.37 90.62 76.67 76.71 88.24 83.33 86.79 90.24 82.93 89.47 81.08 83.95 83.78 58.54 91.36 83.08 83.78 96.15 86.21 93.55 83.87 81.40 79.07 76.00 72.73 83.87 82.76 91.49 81.67 83.72 94.23 78.18 89.47 83.10 86.84 85.71 84.21 89.74 82.98 70.59 89.55 84.31 82.54 89.29 84.38 89.47 82.00 78.72 89.80 90.48 K alternative_donor Cht2,I_chr3L_1754361_1754605,I_chr3L_1754361_1754860 chr3L - chr3L_1754361_1755586;chr3L_1754361_1754860 chr3L_1754361_1754605 chr3L_1754261_1754360;chr3L_1755587_1755934 14.29 14.29 25.00 10.53 0.00 10.00 33.33 27.27 9.52 8.33 10.00 17.65 20.00 20.00 12.50 33.33 16.67 10.00 10.00 21.43 20.00 NA NA NA NA 9.09 NA NA 50.00 NA 30.00 NA NA 14.29 NA NA NA NA 0.00 14.29 NA 15.00 20.00 NA 0.00 NA 0.00 12.50 13.64 NA 20.00 NA NA NA 10.00 NA 0.00 NA K cassette CG7337,I_chr2L_1910010_1910066,I_chr2L_1938620_1938887,I_chr2L_1942183_1942233 chr2L + chr2L_1937584_1938507 chr2L_1937584_1937865;chr2L_1937911_1938507 chr2L_1937866_1937910 chr2L_1937441_1937583;chr2L_1938508_1938619 59.42 58.06 50.00 53.49 58.62 55.88 23.19 61.54 62.65 61.11 22.50 69.09 68.75 78.12 64.10 68.63 70.97 50.00 72.73 66.25 53.85 50.00 70.37 63.16 65.00 70.00 72.41 26.32 30.43 66.67 76.92 50.00 54.05 69.84 66.67 68.42 60.00 68.42 71.43 54.05 65.00 58.14 53.12 50.00 57.14 76.47 58.82 53.33 59.42 42.86 75.86 61.11 56.25 56.25 53.33 58.82 50.00 43.48 K cassette Itp-r83A chr3R + chr3R_1357066_1357381 chr3R_1357066_1357135;chr3R_1357163_1357381 chr3R_1357136_1357162 chr3R_1357041_1357065;chr3R_1357382_1358028 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 5.88 NA NA 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K intron_retention CG9775,I_chr3R_464132_464367,I_chr3R_466059_466296 chr3R - chr3R_464562_464739 chr3R_464561_464562;chr3R_464739_464740 chr3R_464266_464561;chr3R_464740_465279 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_acceptor CG32626 chrX - chrX_13727056_13728203 chrX_13727065_13728203 chrX_13728204_13728239;chrX_13726937_13727055 91.61 NA NA 78.57 NA NA NA 100.00 92.31 NA NA 90.00 NA NA NA 100.00 NA 100.00 NA 90.91 NA NA 90.91 NA NA NA 88.89 NA NA NA NA NA NA 100.00 NA NA 90.00 NA NA NA NA 87.50 NA NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2389073;chrX_2389272_2389644;chrX_2389762_2392054;chrX_2392149_2392515;chrX_2392665_2395659 chrX_2389074_2389271;chrX_2389645_2389761;chrX_2392055_2392148;chrX_2392516_2392664 chrX_2387149_2387248;chrX_2395660_2395759 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K intron_retention Ucp4A chrX + chrX_17739792_17740963 chrX_17739791_17739792;chrX_17740963_17740964 chrX_17739615_17739791;chrX_17740964_17741452 14.29 NA 14.29 43.75 NA NA 33.33 0.00 17.39 NA NA 41.18 NA NA 11.76 14.29 NA NA NA 15.79 NA 45.45 26.09 21.74 41.67 20.00 9.09 NA 12.50 NA 10.71 NA 0.00 7.14 40.00 0.00 22.22 10.53 10.71 9.09 NA 9.68 NA 16.67 9.09 20.00 10.53 18.18 20.69 11.76 5.56 14.29 NA 13.33 12.50 13.33 14.29 14.29 K intron_retention Tcp-1eta,CG8359 chr3R + chr3R_4627403_4627580 chr3R_4627402_4627403;chr3R_4627580_4627581 chr3R_4627126_4627402;chr3R_4627581_4627841 0.00 0.20 0.00 0.78 0.00 0.00 0.24 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.25 1.03 0.40 0.70 0.00 0.55 0.32 0.95 0.41 0.39 0.00 0.00 0.32 0.00 0.73 0.00 0.00 0.00 0.30 0.00 0.31 0.00 0.29 0.20 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 1.04 0.00 0.00 0.65 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.56 K alternative_donor CG5360 chr2R + chr2R_19411471_19411871 chr2R_19411660_19411871 chr2R_19411872_19411935;chr2R_19411452_19411470 100.00 85.71 100.00 100.00 100.00 83.33 100.00 100.00 100.00 83.33 100.00 100.00 85.71 100.00 85.71 90.00 NA 100.00 100.00 100.00 100.00 100.00 90.00 100.00 100.00 85.71 90.00 NA 100.00 87.50 100.00 100.00 90.00 100.00 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 85.71 100.00 100.00 100.00 100.00 90.00 100.00 NA NA 100.00 100.00 100.00 100.00 K jcn_only_AA R_chr2L_8083458_8089184,R_chr2L_8083458_8089393,Bsg,I_chr2L_8088454_8089057,I_chr2L_8107426_8107747 chr2L + chr2L_8088454_8088609;chr2L_8088454_8089057;chr2L_8088454_8089356;chr2L_8088454_8089490;chr2L_8088454_8088664 chr2L_8088454_8089184 chr2L_8088448_8088453 79.98 NA 67.39 59.46 NA NA 69.81 73.21 65.62 NA NA 68.83 73.81 77.78 88.89 78.38 NA 85.00 79.55 80.41 78.26 NA 76.67 85.00 90.48 85.19 NA NA NA NA 86.11 NA 78.26 76.32 97.06 93.33 NA NA NA 74.42 95.00 87.93 80.65 63.33 NA 86.21 NA NA 87.63 NA 88.89 NA 78.26 NA 92.59 83.33 NA NA K jcn_only_AA CG8051,I_chrX_19197569_19197669 chrX - chrX_19197569_19197669 chrX_19197573_19197669 chrX_19197670_19197769;chrX_19197469_19197568 98.31 97.92 93.33 95.31 100.00 98.31 100.00 98.94 99.07 97.30 100.00 99.14 97.50 100.00 98.48 96.97 97.14 94.34 90.00 100.00 97.92 95.12 96.20 96.10 100.00 98.31 96.77 100.00 99.13 100.00 94.44 93.48 96.36 100.00 98.15 98.31 98.95 98.36 100.00 96.26 98.85 95.52 100.00 98.00 97.98 98.61 97.56 98.36 100.00 100.00 98.75 100.00 98.25 100.00 98.08 100.00 93.62 95.92 K alternative_acceptor FucTB chr2L - chr2L_9429289_9429411 chr2L_9429346_9429411 chr2L_9429412_9429589;chr2L_9428774_9429288 100.00 NA NA 100.00 NA 100.00 100.00 100.00 100.00 NA NA 90.91 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 NA NA NA NA NA NA 90.91 NA NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 NA 100.00 NA NA NA 100.00 NA 100.00 NA K alternative_donor PMCA,I_chr4_371836_372509,I_chr4_374602_374976,RI_chr4_376108_379129,I_chr4_376108_379459,I_chr4_376108_379519 chr4 - chr4_376108_379257 chr4_376108_379175 chr4_376008_376107;chr4_379258_379263 88.89 93.75 84.38 78.05 77.27 69.57 98.04 84.62 83.33 95.00 94.74 80.00 91.18 96.97 86.67 92.45 75.00 70.83 75.76 87.72 82.61 84.00 100.00 100.00 100.00 86.96 100.00 88.89 93.33 92.31 79.07 80.00 61.11 79.03 91.67 94.74 93.75 100.00 100.00 88.46 85.71 80.00 90.00 96.15 NA 93.75 88.89 81.82 80.77 NA 100.00 95.65 NA NA 71.05 100.00 100.00 83.33 K cassette Dp1 chr2R + chr2R_14300583_14302703 chr2R_14300583_14302333;chr2R_14302439_14302703 chr2R_14302334_14302438 chr2R_14300510_14300582;chr2R_14302704_14302791 0.95 3.03 1.64 1.60 0.00 1.96 0.00 0.63 0.89 2.38 1.69 1.31 0.00 1.12 2.25 1.08 0.00 1.32 0.99 4.00 0.00 1.30 1.20 1.09 0.00 0.00 0.00 0.00 0.00 3.39 1.23 0.00 0.58 0.63 1.59 3.51 1.23 1.92 1.72 0.87 0.00 0.66 1.14 1.23 0.00 1.59 0.00 0.91 0.61 1.54 0.00 0.00 0.00 NA 1.11 0.00 0.00 0.00 K intron_retention Taf1 chr3R + chr3R_2480387_2480930 chr3R_2480386_2480387;chr3R_2480930_2480931 chr3R_2480192_2480386;chr3R_2480931_2481770 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 3.90 2.86 0.00 6.56 0.00 6.67 4.00 4.65 3.70 0.00 4.65 0.00 0.00 7.50 0.00 0.00 0.00 0.00 0.00 0.00 3.77 0.00 0.00 0.00 1.22 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 2.86 0.00 0.00 3.08 0.00 5.13 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 1.75 K intron_retention CG9098 chr2L - chr2L_6011727_6011782 chr2L_6011726_6011727;chr2L_6011782_6011783 chr2L_6011555_6011726;chr2L_6011783_6011924 2.78 NA NA 28.57 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 5.56 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_donor par-1,I_chr2R_15348122_15353660,RI_chr2R_15348122_15356294,EF_chr2R_15349994_15351814,F_chr2R_15349994_15351846,noncoding_8037,FI_chr2R_15350149_15351814,I_chr2R_15350437_15351814,I_chr2R_15350437_15351825,I_chr2R_15350905_15351814,RI_chr2R_15355419_15356294,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15350157_15351846;chr2R_15350285_15351846;chr2R_15350149_15351846 chr2R_15350437_15351846 chr2R_15351847_15351914;chr2R_15350068_15350148 66.67 37.50 66.67 43.75 57.14 60.00 66.67 69.23 85.71 75.00 60.00 53.33 50.00 62.50 100.00 62.50 71.43 66.67 57.14 83.33 50.00 83.33 61.54 60.00 66.67 60.00 66.67 60.00 87.50 71.43 88.89 NA 75.00 92.31 66.67 66.67 66.67 100.00 40.00 60.00 NA 72.73 57.14 75.00 NA NA 66.67 75.00 85.00 33.33 80.00 57.14 60.00 NA 54.55 NA 50.00 75.00 K intron_retention CG33307 chr2L - chr2L_13841036_13841095 chr2L_13841035_13841036;chr2L_13841095_13841096 chr2L_13840802_13841035;chr2L_13841096_13841374 0.00 0.00 0.00 0.00 0.00 0.51 0.66 0.19 0.60 0.00 0.00 0.46 0.45 0.38 0.00 0.65 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.78 0.00 0.51 1.65 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.55 0.00 0.00 1.50 0.00 0.00 1.39 0.34 0.62 0.00 0.00 0.00 0.00 0.52 1.05 0.23 0.59 K alternative_acceptor CG42327,CG14715,I_chr3R_7498847_7498975,I_chr3R_7506312_7506381 chr3R + chr3R_7498847_7498975 chr3R_7498847_7498949 chr3R_7498747_7498846;chr3R_7498976_7499075 100.00 98.68 98.53 100.00 98.15 100.00 100.00 98.68 100.00 98.81 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.34 100.00 100.00 100.00 100.00 100.00 98.31 100.00 98.59 100.00 100.00 100.00 98.81 98.81 100.00 98.53 100.00 98.98 100.00 100.00 98.31 100.00 100.00 100.00 100.00 98.60 100.00 100.00 99.26 99.12 98.82 100.00 100.00 100.00 100.00 98.72 100.00 100.00 98.98 K intron_retention flw chrX + chrX_10280597_10300385 chrX_10280596_10280597;chrX_10300385_10300386 chrX_10280231_10280596;chrX_10300386_10300733 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 2.99 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor Eno,EI_chr2L_1727403_1727645,I_chr2L_1728229_1728302 chr2L - chr2L_1728233_1729549 chr2L_1728233_1729274 chr2L_1728054_1728232;chr2L_1729550_1729575 98.25 96.00 96.00 94.59 100.00 100.00 100.00 88.24 97.62 100.00 100.00 93.18 94.12 95.45 100.00 96.67 100.00 100.00 96.55 97.73 95.00 93.33 97.22 97.56 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 90.32 96.55 96.15 100.00 100.00 100.00 100.00 100.00 97.78 95.65 89.47 100.00 100.00 97.44 100.00 90.74 97.37 100.00 100.00 100.00 100.00 96.67 97.22 98.25 97.92 K alternative_donor Psn,RI_chr3L_20430213_20430358 chr3L + chr3L_20427403_20427647;chr3L_20427445_20427647 chr3L_20427346_20427647 chr3L_20427648_20427812;chr3L_20427187_20427345 10.71 9.70 13.59 13.93 10.98 17.20 6.25 10.91 10.31 16.98 10.00 8.86 11.48 9.33 12.50 2.56 12.31 2.82 6.35 11.67 5.56 6.93 13.25 11.45 16.67 10.23 10.69 10.71 3.75 7.06 10.96 11.25 9.09 11.86 9.59 5.88 9.64 15.18 11.24 21.13 10.00 12.92 10.29 9.52 13.18 13.82 13.53 11.67 8.73 9.38 13.07 10.61 7.69 9.32 7.53 12.98 13.48 11.11 K intron_retention CG11964 chr3R - chr3R_4768866_4768926 chr3R_4768865_4768866;chr3R_4768926_4768927 chr3R_4768400_4768865;chr3R_4768927_4769122 0.00 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 1.30 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 K alternative_acceptor Cp110,I_chrX_21890195_21895316,I_chrX_21900456_21904601 chrX + chrX_21884587_21884677 chrX_21884587_21884674 chrX_21884512_21884586;chrX_21884678_21884730 14.29 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 13.33 NA NA NA NA NA NA NA NA NA NA 31.25 NA NA NA NA NA NA NA NA NA K intron_retention CG8818 chr2R - chr2R_8405094_8405145 chr2R_8405093_8405094;chr2R_8405145_8405146 chr2R_8404760_8405093;chr2R_8405146_8405279 0.00 0.00 0.00 1.90 0.00 0.00 0.00 0.00 0.65 0.00 0.00 1.82 0.00 2.00 0.00 1.32 0.00 4.76 0.00 1.10 0.00 0.00 0.70 2.34 0.00 0.00 1.04 3.75 5.49 0.00 0.00 2.11 2.10 1.12 0.00 1.30 0.00 0.00 0.00 0.00 2.21 0.00 0.00 0.00 0.00 3.36 1.75 2.47 0.00 1.09 0.00 0.00 3.03 0.82 1.32 0.00 0.00 1.45 K alternative_donor I_chr3R_17177101_17200781,mod(mdg4),I_chr3R_17183481_17200781,F_chr3R_17187010_17200781,F_chr3R_17187861_17200781,F_chr3R_17192467_17200781,F_chr3R_17193961_17200781,F_chr3R_17194785_17200781,F_chr3R_17195968_17200781,RI_chr3R_17198778_17199052,RI_chr3R_17198803_17199019,RI_chr3R_17198803_17199052 chr3R - chr3R_17198803_17199019;chr3R_17198803_17199052 chr3R_17198803_17200781 chr3R_17198703_17198802;chr3R_17200782_17200881 94.44 95.24 94.44 92.86 94.44 90.00 90.91 90.91 92.11 100.00 91.67 92.31 93.75 87.50 92.86 86.96 93.33 94.44 94.44 93.62 100.00 100.00 89.47 91.30 100.00 92.59 90.00 100.00 100.00 100.00 83.33 100.00 100.00 90.91 100.00 100.00 96.30 94.44 95.00 97.44 100.00 87.50 93.33 100.00 100.00 100.00 100.00 97.44 87.10 100.00 91.67 94.12 94.44 91.67 91.67 94.44 93.33 100.00 K jcn_only_AD CG8866,I_chr3R_5160165_5160221 chr3R - chr3R_5160165_5160232 chr3R_5160165_5160221 chr3R_5160065_5160164;chr3R_5160233_5160321 4.00 NA NA 4.00 NA NA NA NA 5.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA 9.09 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 8.70 NA 0.00 NA NA NA NA NA 4.35 3.70 NA NA NA NA NA NA NA NA NA K intron_retention RpII18 chr3R + chr3R_1197638_1197699 chr3R_1197637_1197638;chr3R_1197699_1197700 chr3R_1197447_1197637;chr3R_1197700_1198217 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.13 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA Rab40,RI_chrX_12354642_12355021 chrX - chrX_12355683_12355768 chrX_12355713_12355768 chrX_12355769_12355837;chrX_12355615_12355682 31.27 43.24 38.46 35.85 30.77 41.86 33.33 28.57 33.33 36.36 29.17 31.58 NA 50.00 35.42 24.00 31.43 16.67 38.89 39.08 25.81 31.11 44.44 22.58 28.57 26.53 36.17 41.86 36.00 30.77 33.33 34.88 38.30 37.04 35.48 29.73 26.32 13.16 23.29 33.33 23.53 37.97 23.08 23.40 26.83 25.30 28.21 32.86 32.47 23.81 25.58 37.21 52.38 27.59 27.69 23.26 29.41 28.42 K alternative_acceptor RI_chrX_502548_513324,CG13366,I_chrX_508729_508806,I_chrX_509497_513324,I_chrX_509727_511407,I_chrX_509727_511477,noncoding_21186,I_chrX_509834_511407,CRE_chrX_509851_511307,I_chrX_510004_511307,I_chrX_510004_511407,I_chrX_513176_513324,I_chrX_513519_513631 chrX - chrX_509727_511477 chrX_509834_511477 chrX_511478_511507;chrX_509715_509726 95.00 NA NA NA NA NA 100.00 NA 90.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention PyK,CG7069,CG18596,I_chr3R_18203637_18203690,I_chr3R_18209085_18209133 chr3R + chr3R_18197890_18197947 chr3R_18197889_18197890;chr3R_18197947_18197948 chr3R_18196510_18197889;chr3R_18197948_18198104 0.29 0.51 0.29 0.49 1.07 0.00 0.29 0.27 0.94 0.35 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.61 0.99 1.37 0.54 0.00 0.00 0.31 1.01 0.81 0.23 0.26 0.00 0.00 0.00 1.09 1.17 0.40 0.47 0.17 0.00 0.00 0.00 0.85 0.00 0.23 0.56 0.18 0.55 0.00 0.63 0.65 0.70 0.00 0.53 0.29 1.01 0.61 0.73 0.00 K intron_retention par-1,EFI_chr2R_15361473_15362032,RI_chr2R_15361473_15362035,I_chr2R_15361473_15366246,I_chr2R_15362147_15365120,F_chr2R_15362147_15365138,I_chr2R_15362147_15365165,RI_chr2R_15363358_15365120,I_chr2R_15363358_15366246,I_chr2R_15365210_15370456 chr2R + chr2R_15361473_15365120 chr2R_15361472_15361473;chr2R_15365120_15365121 chr2R_15361373_15361472;chr2R_15365121_15365127 3.57 NA NA NA NA 7.14 NA NA NA NA NA NA NA NA NA 8.70 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 10.53 NA NA NA NA NA NA NA NA NA K intron_retention CG10462 chr2L - chr2L_19735634_19735766 chr2L_19735633_19735634;chr2L_19735766_19735767 chr2L_19735512_19735633;chr2L_19735767_19735942 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.17 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 0.00 1.80 1.10 0.00 0.00 0.63 2.61 0.00 2.02 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 1.82 0.00 K alternative_donor LIMK1,I_chrX_12488942_12489000 chrX - chrX_12484518_12485963;chrX_12484518_12486079 chrX_12484518_12486000 chrX_12483874_12484517;chrX_12486080_12486162 16.67 22.22 14.29 24.24 14.29 15.79 12.00 14.29 18.18 12.50 23.81 12.82 25.00 21.74 12.50 17.65 18.18 18.18 15.00 19.57 9.52 13.46 15.79 17.39 25.00 20.00 9.52 11.11 22.86 26.67 20.69 16.67 26.53 12.82 20.00 22.22 6.06 8.33 18.18 12.20 13.33 20.83 13.33 7.69 11.11 11.76 16.67 16.67 16.22 16.67 16.67 25.00 18.18 22.22 18.52 15.38 18.18 16.00 K intron_retention eIF2B-delta chr2R + chr2R_19274146_19274529 chr2R_19274145_19274146;chr2R_19274529_19274530 chr2R_19274016_19274145;chr2R_19274530_19274619 25.93 13.79 25.81 28.30 29.41 26.92 16.18 21.43 17.86 56.25 34.62 22.50 54.17 23.53 20.00 26.92 19.23 15.38 19.44 20.97 26.09 20.83 27.66 30.00 37.93 24.14 30.77 33.33 40.54 29.17 26.32 36.84 35.29 24.07 33.33 25.93 39.39 24.14 21.95 33.33 47.06 25.00 23.08 12.24 42.86 22.22 23.64 46.67 20.59 31.82 29.27 25.00 26.67 28.57 23.53 21.95 13.79 20.00 K intron_retention RI_chr3L_20370940_20371530,I_chr3L_20374844_20374891,fbl chr3L + chr3L_20383309_20383367 chr3L_20383308_20383309;chr3L_20383367_20383368 chr3L_20383016_20383308;chr3L_20383368_20383493 19.15 16.33 17.65 11.11 21.88 15.91 25.81 11.96 13.33 23.81 31.03 15.32 15.00 13.64 16.39 16.05 20.93 16.33 22.00 17.98 21.74 25.00 16.92 17.44 28.57 20.83 14.63 32.43 16.67 22.22 21.35 20.51 25.00 15.79 27.27 24.32 25.58 19.15 19.05 23.94 36.36 17.17 15.56 26.83 25.81 25.00 16.95 18.60 15.53 31.75 16.67 26.32 15.00 25.00 10.94 23.08 17.86 23.08 K intron_retention DmL37a,I_chr2L_5071155_5071224 chr2L + chr2L_5071031_5071102 chr2L_5071030_5071031;chr2L_5071102_5071103 chr2L_5071020_5071030;chr2L_5071103_5071154 11.54 16.67 11.54 12.16 13.33 10.71 25.00 15.71 24.53 0.00 17.39 9.26 16.67 10.53 17.39 12.77 22.73 15.38 10.53 5.61 10.34 2.70 53.85 18.18 23.08 20.00 26.67 17.86 23.13 1.79 7.69 1.45 1.41 11.48 3.45 4.40 NA NA 15.38 7.26 0.98 13.58 13.51 15.38 2.45 2.76 7.41 1.08 9.86 12.00 23.53 18.75 6.85 6.52 9.38 4.26 26.00 0.47 K intron_retention mus205 chr2R + chr2R_3686424_3686488 chr2R_3686423_3686424;chr2R_3686488_3686489 chr2R_3683736_3686423;chr2R_3686489_3687583 0.00 0.00 0.00 10.53 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 NA NA NA 0.00 0.00 NA 5.88 0.00 0.00 0.00 0.00 0.00 0.00 7.41 4.76 0.00 NA 0.00 0.00 NA 4.17 0.00 NA 0.00 2.70 0.00 7.41 NA 3.85 0.00 4.55 NA 4.35 0.00 0.00 0.00 NA NA NA 0.00 NA NA NA K cassette REI_chr3L_1545423_1545473,I_chr3L_1545606_1545652,CG7879 chr3L - chr3L_1564281_1568417 chr3L_1564281_1568196;chr3L_1568310_1568417 chr3L_1568197_1568309 chr3L_1563966_1564280;chr3L_1568418_1568607 89.69 88.89 100.00 73.68 NA 88.89 78.95 88.89 83.33 NA 85.71 85.19 95.45 90.91 75.00 85.19 83.33 90.91 83.33 97.22 87.50 100.00 91.67 100.00 62.50 90.91 71.43 NA 88.89 92.86 92.31 94.44 85.71 80.77 84.62 94.44 94.12 75.00 91.67 88.00 91.67 85.19 90.91 93.33 81.25 85.00 91.67 93.75 83.87 86.36 100.00 100.00 94.44 92.86 90.48 94.44 88.00 96.00 K intron_retention CG2818 chr2L + chr2L_3714492_3714646 chr2L_3714491_3714492;chr2L_3714646_3714647 chr2L_3714467_3714491;chr2L_3714647_3716104 30.77 33.33 30.77 28.57 NA NA 30.77 64.29 28.00 NA 41.67 26.32 45.45 NA 30.77 26.67 NA 54.55 53.85 37.50 NA 13.51 19.23 20.00 23.53 NA 23.53 25.00 30.77 26.67 66.67 NA 32.00 21.43 33.33 NA 16.67 20.00 28.57 42.86 45.45 28.12 23.08 33.33 NA 38.46 23.08 47.37 38.10 NA 23.08 25.00 NA NA 33.33 NA 33.33 30.00 N jcn_only_AA Karl,I_chrX_11687161_11687475,I_chrX_11689220_11690898 chrX + chrX_11682370_11682812 chrX_11682370_11682803 chrX_11682363_11682369;chrX_11682813_11683136 36.36 NA NA NA NA NA 55.56 NA NA NA 34.78 NA 19.05 NA NA 31.03 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 48.39 NA NA NA NA NA NA 36.36 NA 42.31 NA NA NA NA NA NA NA K intron_retention hipk,RI_chr3L_548068_552227 chr3L + chr3L_548068_569526 chr3L_548067_548068;chr3L_569526_569527 chr3L_547968_548067;chr3L_569527_569816 0.00 0.00 0.00 0.35 0.00 0.00 0.45 0.15 0.21 0.00 0.00 0.49 0.00 0.54 0.00 0.40 0.00 0.00 0.58 0.00 0.35 0.28 0.29 0.50 0.00 0.00 0.75 4.26 0.38 0.28 0.49 0.00 0.10 0.00 0.27 0.21 0.00 0.00 0.00 0.32 0.53 0.47 0.33 0.65 0.00 0.00 0.00 0.00 0.14 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.25 K intron_retention Taf12,RI_chr3R_7504595_7505288,I_chr3R_7504949_7505288 chr3R - chr3R_7504907_7505075 chr3R_7504906_7504907;chr3R_7505075_7505076 chr3R_7504849_7504906;chr3R_7505076_7505120 92.59 90.48 89.13 87.21 90.32 85.71 98.77 98.65 91.92 86.21 97.30 95.29 97.87 92.68 92.59 90.41 92.50 89.74 100.00 93.18 97.30 88.14 93.85 91.84 97.37 95.74 98.21 92.98 93.06 90.57 91.49 82.54 87.14 94.37 97.73 92.73 86.54 97.83 93.10 91.35 96.72 92.00 93.10 92.06 85.88 87.27 87.76 92.31 95.35 93.75 94.64 100.00 91.11 92.00 98.25 93.33 92.19 77.98 K intron_retention I_chr3L_834336_834491,Gr61a chr3L + chr3L_842355_842410 chr3L_842354_842355;chr3L_842410_842411 chr3L_842164_842354;chr3L_842411_842577 54.55 NA NA 76.92 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 38.46 NA NA 60.00 NA NA NA 77.78 NA NA NA NA NA NA NA NA NA NA NA 70.00 38.46 NA 40.00 NA NA NA NA NA NA NA 54.55 41.67 NA NA 54.55 NA 21.43 NA NA K intron_retention CG34133,F_chr3R_25696884_25696960 chr3R + chr3R_25698373_25698426 chr3R_25698372_25698373;chr3R_25698426_25698427 chr3R_25698263_25698372;chr3R_25698427_25698986 97.33 97.83 97.62 96.47 95.45 97.56 100.00 98.80 96.77 100.00 97.22 95.40 97.67 98.04 98.00 97.33 100.00 100.00 100.00 98.98 100.00 90.16 96.63 95.59 97.06 98.08 98.59 97.67 93.33 88.89 96.49 87.10 90.20 100.00 94.12 97.56 95.31 95.83 98.51 94.94 97.73 98.98 100.00 98.36 82.50 94.55 93.88 98.08 97.67 92.16 97.26 100.00 94.74 96.55 100.00 94.87 95.35 91.49 K alternative_acceptor Dystrophin,noncoding_17759,I_chr3R_15289404_15290179 chr3R + chr3R_15289404_15290221 chr3R_15289404_15290179 chr3R_15289382_15289403;chr3R_15290222_15290279 36.36 NA NA 28.57 NA NA 55.56 25.00 53.33 NA NA 27.78 25.00 46.15 NA 41.18 40.00 NA NA 30.77 NA NA NA NA NA NA NA NA NA NA 36.36 NA NA 25.00 NA NA NA NA NA NA NA 35.71 NA NA NA NA NA NA 37.50 NA NA NA NA NA 36.36 NA NA NA K multi_cassette par-1,I_chr2R_15359242_15360944,I_chr2R_15359251_15359544,I_chr2R_15359251_15360944,I_chr2R_15359658_15359771,F_chr2R_15362147_15365138,RI_chr2R_15363358_15365120,I_chr2R_15365210_15370456 chr2R + chr2R_15359242_15360944 chr2R_15359242_15360323;chr2R_15360437_15360500;chr2R_15360670_15360944 chr2R_15360324_15360436;chr2R_15360501_15360669 chr2R_15359151_15359241;chr2R_15360945_15360953 100.00 100.00 100.00 100.00 100.00 98.92 100.00 99.22 100.00 100.00 98.68 100.00 100.00 100.00 100.00 100.00 98.85 98.94 100.00 100.00 100.00 96.05 99.52 99.36 99.14 100.00 99.44 100.00 99.02 100.00 100.00 100.00 100.00 100.00 100.00 99.31 99.48 100.00 100.00 100.00 100.00 100.00 98.84 100.00 98.95 99.10 100.00 100.00 99.45 99.07 99.52 100.00 100.00 100.00 100.00 100.00 99.17 100.00 K alternative_acceptor CG32982,I_chr2L_9127467_9148754,EF_chr2L_9135385_9148841,F_chr2L_9149162_9154658 chr2L + chr2L_9162709_9163140;chr2L_9162709_9163143 chr2L_9162709_9163294 chr2L_9162363_9162708;chr2L_9163295_9163398 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AA CG8455 chr2L + chr2L_8200281_8200350 chr2L_8200281_8200345 chr2L_8200102_8200280;chr2L_8200351_8200652 76.19 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 76.19 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K intron_retention Vps13,I_chr2R_3464510_3464571 chr2R + chr2R_3457644_3457704 chr2R_3457643_3457644;chr2R_3457704_3457705 chr2R_3457507_3457643;chr2R_3457705_3457936 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K intron_retention wapl,Cyp4d1 chrX - chrX_2045645_2045709 chrX_2045644_2045645;chrX_2045709_2045710 chrX_2045556_2045644;chrX_2045710_2045879 6.06 12.90 7.41 0.00 8.33 10.53 8.33 0.00 10.00 9.52 7.69 6.82 19.05 20.00 0.00 16.67 11.76 11.54 0.00 9.23 8.33 2.27 0.00 0.00 0.00 8.33 5.88 NA 0.00 6.25 7.69 0.00 6.38 7.69 0.00 0.00 3.33 0.00 0.00 13.46 0.00 7.27 15.00 0.00 0.00 5.26 0.00 6.82 5.00 0.00 6.25 0.00 0.00 8.33 14.29 0.00 0.00 2.70 K intron_retention l(1)G0289,I_chrX_10254197_10259575 chrX - chrX_10252885_10252950 chrX_10252884_10252885;chrX_10252950_10252951 chrX_10252733_10252884;chrX_10252951_10253160 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 K intron_retention CG13124,RI_chr2L_9907784_9908405,I_chr2L_9908142_9908424,I_chr2L_9908175_9908424,I_chr2L_9911150_9911296 chr2L - chr2L_9907784_9908531 chr2L_9907783_9907784;chr2L_9908531_9908532 chr2L_9907756_9907783;chr2L_9908532_9908619 84.75 89.36 88.24 86.36 77.27 83.33 85.00 87.23 75.27 86.36 81.82 84.62 75.86 75.00 88.57 91.38 80.77 83.33 88.57 84.21 82.61 77.39 86.25 82.69 91.84 85.71 74.00 86.96 85.00 88.00 80.39 95.83 89.29 84.21 80.77 83.13 78.79 81.08 86.00 84.42 88.57 85.25 90.00 79.71 83.33 84.75 80.00 87.50 87.27 81.08 88.06 87.50 83.33 87.18 81.40 84.62 87.23 87.23 K jcn_only_AA Hrb98DE,I_chr3R_24425722_24426084,I_chr3R_24425722_24428493,I_chr3R_24426291_24426781,RI_chr3R_24429041_24431183 chr3R + chr3R_24425722_24426439 chr3R_24425722_24426427 chr3R_24425622_24425721;chr3R_24426440_24426915 27.49 15.09 32.14 40.00 23.64 31.33 18.18 37.86 27.95 28.12 41.67 26.90 25.35 23.76 23.21 26.86 28.95 23.60 28.57 30.87 NA 31.90 21.82 30.21 36.59 45.36 25.84 21.82 24.21 40.00 30.68 23.42 29.32 30.26 23.08 24.47 12.07 25.00 32.39 30.52 36.14 30.59 38.82 27.03 28.00 23.91 30.30 24.73 35.94 26.32 23.02 20.00 26.39 28.74 28.03 22.12 19.51 22.22 K multi_cassette unc-13,I_chr4_897821_902468,RI_chr4_897821_903586,I_chr4_899619_903586,I_chr4_902576_903242,I_chr4_906518_917117,I_chr4_913576_919018,I_chr4_924098_927699,RI_chr4_928193_928245,I_chr4_928482_929704,I_chr4_929811_932812 chr4 - chr4_897821_903586 chr4_897821_902468;chr4_902576_903242;chr4_903350_903586 chr4_902469_902575;chr4_903243_903349 chr4_897721_897820;chr4_903587_903686 16.67 22.22 NA 6.52 NA 27.27 7.69 12.20 14.29 NA NA 6.90 NA 18.18 7.69 35.29 NA 42.86 16.67 11.76 NA 23.08 27.27 8.33 13.04 20.00 6.06 14.29 20.00 15.38 21.43 NA 23.08 9.52 18.18 7.41 21.43 NA 40.00 23.08 14.29 18.18 22.22 25.00 NA 10.00 NA 10.00 12.00 NA 12.50 NA NA NA 18.18 NA NA NA K alternative_donor alph,I_chr3R_25417890_25422962 chr3R + chr3R_25417890_25418993 chr3R_25417944_25418993 chr3R_25418994_25419629;chr3R_25417790_25417889 1.15 0.00 1.54 1.74 0.93 0.93 1.74 1.56 1.47 0.00 1.98 0.92 0.95 1.92 2.24 1.22 0.00 0.88 1.48 0.45 1.03 5.77 0.00 1.32 1.92 0.84 0.00 1.59 7.22 2.35 0.00 1.15 1.50 0.00 0.00 4.35 0.00 2.78 2.22 2.16 1.12 0.84 1.05 2.70 2.35 0.95 1.72 0.65 1.95 1.82 1.15 1.64 0.00 0.00 0.00 1.79 0.00 0.60 K jcn_only_AD CG31365,RI_chr3R_18950724_18950786,RI_chr3R_18950918_18950979 chr3R - chr3R_18950724_18950786 chr3R_18950724_18950783 chr3R_18950655_18950723;chr3R_18950787_18950846 100.00 95.24 100.00 94.74 NA 95.65 92.59 100.00 94.64 NA NA 97.37 100.00 NA 95.00 100.00 NA 95.24 96.43 95.92 100.00 100.00 93.75 100.00 NA 100.00 NA NA 100.00 100.00 NA 100.00 98.28 100.00 NA 96.00 100.00 NA 97.30 95.74 100.00 94.12 NA NA NA 100.00 100.00 100.00 97.73 100.00 100.00 95.83 100.00 100.00 92.31 93.10 100.00 98.18 K intron_retention Csp,RI_chr3L_22262215_22262452,I_chr3L_22264863_22266536,I_chr3L_22273037_22275661 chr3L + chr3L_22264863_22265468 chr3L_22264862_22264863;chr3L_22265468_22265469 chr3L_22264763_22264862;chr3L_22265469_22266829 30.36 26.79 32.79 28.57 30.56 26.83 53.41 34.62 35.66 55.26 4.65 11.65 14.29 30.61 30.36 36.23 34.78 24.53 35.29 21.55 7.69 47.73 31.18 28.95 36.36 44.83 26.87 15.52 36.23 20.83 37.50 28.57 32.14 35.44 33.33 50.88 32.53 27.12 29.31 38.14 27.12 30.77 31.71 26.25 44.00 26.37 20.34 28.40 31.11 22.73 19.57 35.29 25.58 25.49 26.67 33.33 23.81 22.97 K intron_retention CG9932,I_chr2L_13025498_13027193,I_chr2L_13031395_13035824 chr2L - chr2L_13025498_13027065 chr2L_13025497_13025498;chr2L_13027065_13027066 chr2L_13025398_13025497;chr2L_13027066_13027744 65.52 68.00 53.12 65.85 62.50 41.38 69.57 49.09 63.33 78.95 41.67 47.17 33.33 63.33 61.29 65.85 56.52 59.09 54.55 66.67 55.00 63.49 60.47 65.52 72.41 74.07 63.16 67.11 68.18 69.23 58.06 76.19 73.47 67.31 64.71 70.37 65.22 78.95 68.18 96.77 68.18 62.67 72.22 70.21 71.43 73.53 64.00 83.33 54.55 67.57 62.96 64.29 78.12 68.18 54.29 57.14 65.00 75.00 K cassette CG16718,E_chr3R_15462172_15464824,RI_chr3R_15464150_15464400,EI_chr3R_15465136_15466705 chr3R - chr3R_15464150_15464622 chr3R_15464150_15464400;chr3R_15464473_15464622 chr3R_15464401_15464472 chr3R_15464050_15464149;chr3R_15464623_15464691 6.67 4.00 2.94 6.67 0.00 7.41 0.00 8.89 4.76 0.00 5.88 2.22 10.53 0.00 4.55 5.88 4.55 3.85 5.41 5.00 6.67 18.92 7.14 8.11 14.29 5.56 5.26 13.64 11.11 5.56 9.09 NA 10.71 8.51 7.14 3.70 10.00 8.70 5.88 7.69 15.00 4.17 4.35 9.52 NA 16.00 5.56 7.14 9.09 6.67 5.88 4.76 16.67 NA 0.00 16.67 NA 13.64 K intron_retention rump,RI_chr3R_5335093_5335157,I_chr3R_5338175_5338299 chr3R - chr3R_5333109_5334012 chr3R_5333108_5333109;chr3R_5334012_5334013 chr3R_5331980_5333108;chr3R_5334013_5334151 3.77 1.92 3.33 8.55 2.94 4.88 5.22 4.11 4.74 1.92 8.33 5.11 6.35 4.35 4.88 2.27 5.21 2.70 1.87 14.29 6.35 3.77 2.80 1.68 6.67 3.30 5.56 4.48 4.44 2.38 3.26 6.35 7.14 4.71 1.41 15.56 3.60 3.26 3.75 3.52 5.71 3.98 3.85 3.92 2.56 2.44 0.00 6.98 2.63 2.97 5.11 3.33 3.51 2.67 4.59 0.79 1.35 2.82 K intron_retention tou,I_chr2R_7468394_7468453,RI_chr2R_7474644_7475275,I_chr2R_7479681_7491857,I_chr2R_7504956_7505020 chr2R - chr2R_7468904_7469132 chr2R_7468903_7468904;chr2R_7469132_7469133 chr2R_7468454_7468903;chr2R_7469133_7469254 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K jcn_only_AD vig chr2L - chr2L_15067690_15067915;chr2L_15067690_15067952;chr2L_15067690_15067995;chr2L_15067690_15067868;chr2L_15067690_15067999 chr2L_15067690_15068029 chr2L_15066937_15067689;chr2L_15068030_15068031 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention RhoGAP71E,I_chr3L_15583097_15589765 chr3L + chr3L_15595616_15595764 chr3L_15595615_15595616;chr3L_15595764_15595765 chr3L_15594743_15595615;chr3L_15595765_15596354 91.29 84.62 88.89 29.41 NA 91.67 68.00 70.00 84.21 90.91 NA 80.95 100.00 84.21 66.67 87.50 90.00 NA NA 85.71 NA 100.00 95.83 93.75 90.00 NA 85.00 84.21 92.86 76.92 100.00 87.50 76.92 93.75 93.33 NA 92.86 100.00 100.00 94.12 83.33 89.47 91.67 92.31 75.00 92.86 100.00 95.65 95.65 93.33 100.00 92.31 90.00 100.00 93.33 81.25 91.67 76.19 K alternative_donor BtbVII,I_chr3L_3150858_3150927,I_chr3L_3151185_3151263 chr3L + chr3L_3148738_3149627;chr3L_3148748_3149627 chr3L_3148688_3149627 chr3L_3149628_3150153;chr3L_3148679_3148687 92.86 NA NA 63.64 NA NA 81.82 92.31 NA NA NA NA NA NA NA NA NA NA NA 92.31 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 92.86 NA NA NA NA NA NA NA NA NA NA NA NA NA 94.44 93.75 NA NA NA NA NA NA NA NA 100.00 K alternative_donor CG1840 chrX + chrX_11782687_11782748 chrX_11782690_11782748 chrX_11782749_11782814;chrX_11782621_11782686 95.83 93.33 100.00 93.94 100.00 100.00 100.00 92.11 100.00 91.67 90.91 97.30 93.33 94.12 96.30 97.06 94.12 93.33 100.00 94.12 100.00 87.50 95.45 100.00 95.00 100.00 95.45 93.33 100.00 100.00 100.00 90.48 94.74 96.30 95.45 93.75 100.00 92.86 95.24 95.83 100.00 100.00 93.33 100.00 95.00 91.43 100.00 100.00 97.06 93.75 95.83 100.00 95.45 95.00 96.15 100.00 100.00 96.43 K alternative_donor CG7369 chr3L + chr3L_22735120_22738488;chr3L_22735652_22738488 chr3L_22735045_22738488 chr3L_22738489_22739986;chr3L_22734976_22735044 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 7.69 0.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 0.00 7.69 NA 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 11.11 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention I_chrX_15223901_15223968,HDAC6,I_chrX_15232958_15233665 chrX + chrX_15232699_15233659 chrX_15232698_15232699;chrX_15233659_15233660 chrX_15232108_15232698;chrX_15233660_15234340 58.82 NA NA 38.89 63.64 NA NA 40.00 65.22 NA NA 68.75 NA 70.00 69.23 NA NA 41.67 NA 85.71 NA 45.45 61.90 64.29 50.00 58.33 46.15 41.67 70.00 50.00 NA NA 50.00 53.33 60.00 NA 54.29 68.75 55.56 35.00 58.82 61.90 NA 63.64 61.11 57.14 56.25 63.64 58.82 43.33 60.00 NA 50.00 59.09 50.00 87.50 52.94 64.29 K intron_retention tub,CRE_chr3R_214119_214182 chr3R + chr3R_214115_214180 chr3R_214114_214115;chr3R_214180_214181 chr3R_214019_214114;chr3R_214181_215535 0.00 0.00 0.00 1.35 2.08 2.50 0.00 0.00 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 3.08 0.00 0.00 0.00 0.00 6.00 12.82 19.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K cassette CG31140,I_chr3R_19799277_19799877,F_chr3R_19799277_19802225 chr3R + chr3R_19799277_19801887 chr3R_19799277_19799873;chr3R_19801401_19801887 chr3R_19799874_19801400 chr3R_19799237_19799276;chr3R_19801888_19802169 96.00 92.31 100.00 69.23 100.00 88.89 77.78 91.67 96.00 88.89 100.00 96.88 100.00 100.00 92.31 100.00 100.00 100.00 88.89 95.00 100.00 95.65 100.00 100.00 92.31 90.00 92.31 80.00 92.31 100.00 93.75 100.00 100.00 94.12 90.91 100.00 95.65 100.00 100.00 95.83 100.00 95.65 100.00 92.31 100.00 100.00 92.86 95.45 100.00 100.00 93.33 87.50 83.33 100.00 85.71 100.00 100.00 100.00 K multi_cassette trol,I_chrX_2387249_2389980,I_chrX_2389272_2395659,I_chrX_2391522_2395659 chrX - chrX_2387249_2395659 chrX_2387249_2389073;chrX_2389272_2389980;chrX_2390067_2390493;chrX_2390627_2390808;chrX_2390959_2391350;chrX_2391522_2392054;chrX_2392149_2392515;chrX_2392665_2395659 chrX_2389074_2389271;chrX_2389981_2390066;chrX_2390494_2390626;chrX_2390809_2390958;chrX_2391351_2391521;chrX_2392055_2392148;chrX_2392516_2392664 chrX_2387149_2387248;chrX_2395660_2395759 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K cassette blow,RI_chr2R_3470434_3470776 chr2R - chr2R_3470434_3474436 chr2R_3470434_3472560;chr2R_3472844_3474436 chr2R_3472561_3472843 chr2R_3470334_3470433;chr2R_3474437_3474581 94.44 91.38 97.83 90.48 93.33 92.00 93.55 94.87 96.72 87.72 97.30 93.83 96.97 94.00 92.86 95.65 100.00 97.92 98.39 88.52 97.37 90.16 89.66 94.67 84.00 98.00 97.18 94.00 93.00 95.83 83.33 94.12 92.31 95.83 98.44 94.12 92.50 93.44 95.71 93.28 91.26 94.44 97.78 98.72 90.29 95.65 92.54 94.89 96.00 98.53 95.70 98.04 97.50 92.86 98.39 89.29 93.68 95.50 K intron_retention yellow-f,yellow-f2 chr3R - chr3R_8818518_8818704 chr3R_8818517_8818518;chr3R_8818704_8818705 chr3R_8818188_8818517;chr3R_8818705_8818932 0.00 0.82 0.86 0.26 1.16 0.52 1.19 0.23 1.57 0.00 0.98 0.58 0.00 0.51 0.00 1.50 0.00 0.00 0.83 0.58 0.00 0.83 0.00 0.49 0.00 0.00 1.69 0.00 0.86 0.00 0.00 0.00 0.00 1.12 0.00 0.00 1.89 0.00 0.00 0.24 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention noncoding_15461 chr3R + chr3R_4831372_4831418 chr3R_4831371_4831372;chr3R_4831418_4831419 chr3R_4831292_4831371;chr3R_4831419_4831903 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.40 100.00 100.00 100.00 100.00 100.00 100.00 K cassette trol,I_chrX_2387249_2389980,I_chrX_2391522_2395659 chrX - chrX_2387249_2388436 chrX_2387249_2387583;chrX_2387710_2388436 chrX_2387584_2387709 chrX_2387149_2387248;chrX_2388437_2388459 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA NA NA NA NA 0.00 NA NA NA K intron_retention sbb,I_chr2R_14193641_14243004,noncoding_7736,RI_chr2R_14243561_14244282,I_chr2R_14243561_14244715 chr2R - chr2R_14243561_14244642 chr2R_14243560_14243561;chr2R_14244642_14244643 chr2R_14243461_14243560;chr2R_14244643_14244766 41.67 NA NA 50.00 NA NA 63.64 50.00 37.50 NA NA 41.67 33.33 NA NA 37.50 NA NA 46.15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA NA 56.25 NA NA NA NA NA NA 35.71 NA NA NA NA NA NA NA NA NA K jcn_only_AD CG7656,I_chr3L_15580697_15581083 chr3L - chr3L_15580697_15581265;chr3L_15580697_15581083 chr3L_15580697_15581154 chr3L_15580597_15580696;chr3L_15581266_15581315 99.42 100.00 100.00 95.45 100.00 100.00 100.00 97.30 97.71 97.78 98.46 98.20 100.00 100.00 100.00 98.75 100.00 95.83 100.00 99.42 100.00 100.00 97.83 100.00 96.00 100.00 100.00 98.44 96.97 96.88 97.87 100.00 95.71 98.08 100.00 100.00 100.00 98.63 100.00 99.19 94.12 98.40 100.00 100.00 98.57 100.00 99.14 100.00 99.02 98.53 98.94 100.00 98.80 98.55 100.00 100.00 100.00 98.77 K jcn_only_AD scu,RhoGAP16F chrX + chrX_17987656_17989117;chrX_17987638_17989117;chrX_17988127_17989117 chrX_17988131_17989117 chrX_17989118_17990486;chrX_17987544_17987637 77.36 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 90.00 NA NA NA NA 77.46 NA NA NA NA NA NA NA NA NA NA 70.00 NA NA NA NA NA NA 77.27 NA NA NA NA NA NA NA NA NA K intron_retention Rho1,I_chr2R_11990455_11992537,RI_chr2R_11991687_11992537 chr2R + chr2R_11990814_11991115 chr2R_11990813_11990814;chr2R_11991115_11991116 chr2R_11990779_11990813;chr2R_11991116_11991279 98.18 98.84 99.13 97.72 98.55 97.97 98.38 99.11 96.27 98.53 98.53 97.95 98.56 98.25 97.87 98.57 97.66 97.16 99.52 99.24 98.35 91.57 99.63 97.88 97.16 98.31 98.06 94.52 92.31 94.50 98.26 98.08 94.92 97.79 98.67 97.35 97.09 97.66 98.29 95.77 96.32 98.18 99.33 99.04 93.08 95.52 99.58 95.45 99.02 97.66 98.02 98.78 99.29 98.91 98.44 99.52 98.46 88.43 K alternative_donor BtbVII,I_chr3L_3150858_3150927,I_chr3L_3151185_3151263 chr3L + chr3L_3151173_3151263 chr3L_3151185_3151263 chr3L_3151264_3151363;chr3L_3151085_3151172 1.15 0.73 0.88 0.83 1.27 2.73 1.09 1.83 1.26 0.77 0.00 1.00 1.47 1.16 7.26 0.98 1.27 1.15 1.30 1.21 0.00 1.49 2.00 2.78 0.65 4.17 1.75 4.22 1.76 0.60 2.75 1.80 0.96 0.78 0.67 0.58 0.83 1.13 0.85 0.85 0.78 0.94 0.00 1.91 0.49 1.91 1.42 1.08 1.48 1.68 1.49 0.92 1.43 0.83 1.59 0.66 0.94 1.15 K jcn_only_AD CG5001,I_chr2L_1191535_1191648 chr2L + chr2L_1191535_1191598 chr2L_1191539_1191598 chr2L_1191599_1191909;chr2L_1191435_1191534 11.11 NA 21.74 15.38 NA 13.04 NA 10.64 11.11 NA NA 11.11 NA NA NA 11.54 8.70 NA 3.23 16.13 NA NA 12.50 NA NA NA NA NA NA 6.45 9.52 NA 9.09 11.32 NA NA 19.23 NA NA 5.41 19.05 8.89 4.76 NA NA 10.00 14.29 6.06 11.90 NA 12.50 NA NA NA NA NA NA 8.70 K alternative_last_exon garz,CEI_chr2R_8219604_8219651 chr2R + chr2R_8219604_8219977 chr2R_8219604_8219654 chr2R_8219978_8220231 chr2R_8219655_8219975 chr2R_8219504_8219603 2.86 1.64 4.55 2.86 2.50 2.94 7.81 4.76 3.57 0.00 3.03 5.13 2.56 5.88 4.17 4.65 3.03 2.63 4.88 3.19 3.33 6.93 2.11 2.17 3.64 2.70 5.19 4.69 3.08 1.45 5.00 1.69 2.02 3.23 1.89 1.45 1.06 1.64 2.17 0.97 3.33 3.90 3.23 1.28 1.02 2.41 1.59 1.47 3.08 2.94 2.20 2.27 1.61 2.90 2.17 1.47 2.86 1.83 K intron_retention CG1622,REI_chrX_13191277_13191339,I_chrX_13191916_13192167,I_chrX_13192409_13192738,EI_chrX_13192857_13192928 chrX + chrX_13191481_13191559 chrX_13191480_13191481;chrX_13191559_13191560 chrX_13191340_13191480;chrX_13191560_13191615 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 1.38 0.00 0.00 0.00 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention hipk,RI_chr3L_548068_552227 chr3L + chr3L_571015_571079 chr3L_571014_571015;chr3L_571079_571080 chr3L_570263_571014;chr3L_571080_571673 0.00 0.22 0.00 0.32 0.25 0.00 0.18 0.30 0.08 0.00 0.00 0.00 0.00 0.00 0.19 0.53 0.00 0.23 0.47 0.00 0.00 0.00 0.00 0.20 0.48 0.00 0.37 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.18 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.16 0.28 0.00 0.00 0.21 0.00 0.00 0.00 K intron_retention Eaf,RI_chr2R_3294566_3294636,I_chr2R_3294566_3294656,RI_chr2R_3294566_3294714,I_chr2R_3294566_3295255,I_chr2R_3294591_3295244 chr2R - chr2R_3294566_3295176 chr2R_3294565_3294566;chr2R_3295176_3295177 chr2R_3294491_3294565;chr2R_3295177_3295326 94.44 100.00 NA 96.55 NA NA 100.00 100.00 90.48 NA NA 94.44 90.91 90.00 85.71 95.00 NA 87.50 100.00 91.30 100.00 93.33 93.75 93.33 91.67 91.67 93.33 100.00 94.44 100.00 100.00 88.89 100.00 100.00 91.67 95.00 85.71 NA 95.00 94.44 100.00 93.33 NA 92.86 100.00 92.31 NA 95.24 89.47 100.00 94.12 NA NA NA 100.00 100.00 88.89 76.47 K intron_retention mav,RI_chr4_645290_646129 chr4 - chr4_645568_645616 chr4_645567_645568;chr4_645616_645617 chr4_645398_645567;chr4_645617_646242 100.00 90.91 100.00 100.00 NA 92.86 100.00 96.30 97.30 NA NA 94.12 100.00 100.00 100.00 100.00 100.00 NA 100.00 96.30 90.91 NA 100.00 100.00 88.89 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 87.50 NA NA NA NA 100.00 NA 95.45 100.00 100.00 NA 100.00 NA NA 97.06 NA 100.00 NA NA 100.00 100.00 NA NA NA K intron_retention Srp68 chr3L + chr3L_8968321_8968424 chr3L_8968320_8968321;chr3L_8968424_8968425 chr3L_8968194_8968320;chr3L_8968425_8968774 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K intron_retention dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21309084_21310000 chr2L_21309083_21309084;chr2L_21310000_21310001 chr2L_21308992_21309083;chr2L_21310001_21310009 100.00 100.00 87.50 92.86 100.00 NA 92.31 100.00 95.83 88.89 100.00 93.75 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 90.00 NA 100.00 100.00 NA 100.00 NA 90.91 NA 94.12 94.12 NA NA 100.00 88.89 NA 100.00 NA 100.00 100.00 NA NA 100.00 NA 95.00 95.24 NA 100.00 NA NA NA 90.91 NA NA 100.00 N jcn_only_AA exba,I_chr3R_1423660_1424665,snoRNA:Psi28S-3186,I_chr3R_1424091_1424665,snoRNA:Psi28S-2442b,snoRNA:Psi28S-2442a,RI_chr3R_1425087_1425302,I_chr3R_1425087_1425925,I_chr3R_1425813_1426009,I_chr3R_1425890_1426125,I_chr3R_1425890_1426209,RI_chr3R_1426370_1426736 chr3R - chr3R_1426370_1426736;chr3R_1426031_1426736;chr3R_1425087_1426736 chr3R_1423660_1426736 chr3R_1426737_1426835 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_donor CG31716,I_chr2L_10397163_10398034,RI_chr2L_10397195_10398034,I_chr2L_10397648_10398034 chr2L + chr2L_10396850_10398034;chr2L_10396922_10398034 chr2L_10396983_10398034 chr2L_10398035_10398134;chr2L_10396810_10396849 100.00 85.00 95.24 96.43 100.00 100.00 97.92 96.49 96.92 100.00 91.67 97.96 96.00 93.33 100.00 96.61 91.30 100.00 92.86 97.50 100.00 100.00 95.45 100.00 100.00 100.00 94.74 85.71 100.00 100.00 100.00 100.00 100.00 98.00 100.00 92.31 92.86 100.00 88.89 100.00 100.00 94.87 95.45 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 100.00 100.00 100.00 K alternative_donor dmondo,I_chr2L_21301528_21308287,I_chr2L_21308811_21309579,I_chr2L_21308811_21310000,I_chr2L_21308827_21310000,I_chr2L_21309092_21309579,I_chr2L_21309092_21309938,RI_chr2L_21309092_21310000 chr2L - chr2L_21309092_21310000;chr2L_21309092_21309945;chr2L_21309092_21309994;chr2L_21309092_21309579 chr2L_21309092_21309938 chr2L_21308992_21309091;chr2L_21310001_21310009 15.70 NA 15.79 11.54 25.00 NA 15.38 20.83 14.29 5.56 17.39 20.51 8.33 16.67 17.39 13.04 NA NA 15.00 15.52 17.65 17.39 8.70 14.29 NA 16.67 10.71 13.33 15.62 NA 9.52 18.18 13.33 11.54 14.29 10.00 NA 16.67 23.33 23.81 NA 21.05 NA 16.67 16.67 23.53 NA 23.08 9.52 NA NA 23.53 NA NA 12.50 NA NA NA K intron_retention msn,I_chr3L_2558033_2560115,F_chr3L_2558036_2563817,I_chr3L_2558390_2561931,I_chr3L_2558393_2560115,I_chr3L_2579521_2586402,I_chr3L_2585716_2586402,I_chr3L_2585733_2586036,I_chr3L_2585739_2586413 chr3L - chr3L_2558036_2563817 chr3L_2558035_2558036;chr3L_2563817_2563818 chr3L_2557936_2558035;chr3L_2563818_2563917 97.92 98.60 96.94 99.12 100.00 98.94 94.44 95.92 96.38 96.36 98.95 98.02 100.00 98.81 99.11 98.61 98.75 99.09 97.47 99.06 96.88 95.04 96.74 97.37 97.16 95.83 92.37 96.97 100.00 96.58 97.30 98.25 98.84 99.28 97.26 96.69 97.81 96.24 98.25 98.38 94.23 96.73 98.65 98.99 94.29 96.59 100.00 96.20 98.92 96.30 97.06 98.98 100.00 99.07 96.64 97.92 100.00 97.96 K intron_retention Atg18,I_chr3L_8182683_8182941 chr3L + chr3L_8180319_8180578 chr3L_8180318_8180319;chr3L_8180578_8180579 chr3L_8180300_8180318;chr3L_8180579_8180676 71.43 63.64 88.89 78.26 NA 80.00 94.44 53.85 75.00 NA NA 80.00 NA NA 66.67 66.67 57.14 80.00 NA 62.50 NA 82.61 72.73 NA 81.82 76.92 71.43 70.00 46.15 NA 66.67 NA 25.00 53.85 NA 94.74 NA NA 66.67 56.25 NA 57.89 NA NA NA NA NA NA 56.25 77.78 80.00 NA NA NA 71.43 NA NA NA K intron_retention CG14741 chr3R - chr3R_7900613_7900895 chr3R_7900612_7900613;chr3R_7900895_7900896 chr3R_7900606_7900612;chr3R_7900896_7901144 70.09 77.50 83.33 63.64 72.73 77.42 83.33 76.92 75.65 46.67 87.50 76.40 NA 68.89 71.43 73.33 78.46 75.44 72.41 82.93 63.46 64.58 55.56 67.74 70.00 52.63 70.18 75.00 54.55 59.52 73.40 78.95 65.08 79.17 56.52 44.78 53.85 72.97 62.26 73.33 62.50 74.31 83.78 60.71 65.38 65.38 46.15 61.90 80.39 91.67 72.00 62.50 51.35 58.33 76.00 58.33 62.50 57.14 K intron_retention Rheb,I_chr3R_1395050_1395121,CRMP chr3R + chr3R_1394994_1395121 chr3R_1394993_1394994;chr3R_1395121_1395122 chr3R_1394950_1394993;chr3R_1395122_1395193 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.37 0.00 0.00 1.78 0.00 0.96 0.00 0.00 0.00 0.00 0.85 1.52 0.00 0.00 1.57 0.00 0.00 0.00 3.54 0.00 2.56 1.14 0.00 0.00 0.69 0.65 0.00 0.00 0.00 0.00 0.00 0.00 2.02 1.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon E(Pc) chr2R + chr2R_7340391_7340897,chr2R_7340381_7340897,chr2R_7340788_7340897,chr2R_7339807_7340897,chr2R_7339818_7340897;chr2R_7339889_7340897 chr2R_7340386_7340897 chr2R_7339722_7339888 chr2R_7340292_7340385 chr2R_7340898_7341974 17.65 21.43 10.00 15.00 NA NA 11.54 24.00 18.18 7.14 NA 21.05 27.27 45.45 12.50 28.00 30.00 NA NA 25.00 22.22 17.65 9.09 26.67 9.09 NA 16.67 7.14 4.17 7.14 23.08 NA 4.76 28.00 20.00 6.67 7.14 NA NA 11.76 NA 22.73 25.00 10.53 NA 9.09 NA 0.00 28.57 NA 21.43 31.25 0.00 NA 20.00 NA NA 8.33 K alternative_first_exon chic chr2L - chr2L_5979705_5979818,chr2L_5979705_5979951,chr2L_5979705_5979953,chr2L_5979705_5979959,chr2L_5979705_5980025,chr2L_5979705_5980558,chr2L_5979705_5980632,chr2L_5979705_5980639,chr2L_5979705_5980734,chr2L_5979705_5980846;chr2L_5979705_5980952,chr2L_5979705_5980950;chr2L_5979705_5980208 chr2L_5979705_5979939 chr2L_5980953_5981025;chr2L_5980209_5980481 chr2L_5979940_5980098 chr2L_5979412_5979704 83.03 83.49 81.48 73.83 82.12 83.52 84.04 79.83 81.44 79.63 84.44 85.36 82.14 85.42 80.57 86.58 83.03 83.43 82.73 83.77 86.21 78.36 89.69 86.27 87.17 84.42 85.21 79.00 72.49 72.44 86.10 77.46 59.53 80.22 83.07 74.83 86.12 87.09 85.96 80.96 76.79 80.65 82.30 80.24 73.02 80.01 87.50 73.04 81.94 87.09 88.70 88.08 80.79 87.80 83.49 87.97 86.33 64.86 K alternative_first_exon porin chr2L - chr2L_10848864_10850354;chr2L_10848864_10850753;chr2L_10848864_10849030 chr2L_10848864_10850216 chr2L_10850754_10850868;chr2L_10849031_10849065 chr2L_10850217_10850340 chr2L_10848544_10848863 0.00 0.00 0.35 0.00 0.00 0.00 0.37 0.25 0.28 0.74 0.00 0.40 0.51 0.00 0.00 0.00 0.00 0.40 0.36 0.33 0.00 0.00 0.00 0.00 0.98 0.37 0.62 0.00 1.10 0.89 0.00 2.15 1.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.32 0.00 1.44 0.00 1.80 0.17 0.00 0.54 0.00 0.00 0.79 0.00 0.00 0.00 1.69 K alternative_first_exon tacc chr3R - chr3R_563503_563786;chr3R_563503_567573;chr3R_563503_565293 chr3R_563503_565232 chr3R_567574_569904;chr3R_565294_565365 chr3R_565233_565269 chr3R_563195_563502 8.70 11.54 13.56 10.92 14.63 9.38 21.28 15.38 17.65 6.06 17.86 12.09 12.50 13.46 15.15 5.94 17.65 8.89 8.47 9.71 14.29 8.82 1.85 1.75 6.45 9.09 0.00 9.68 4.00 2.56 17.50 8.00 4.17 12.87 0.00 2.56 8.70 2.63 5.88 4.35 5.00 16.00 8.89 7.69 8.70 2.44 0.00 2.86 17.95 5.71 2.44 12.96 7.14 0.00 17.24 2.78 12.00 5.00 K alternative_first_exon Argk chr3L - chr3L_9043460_9044229;chr3L_9043460_9055006 chr3L_9043460_9050642 chr3L_9044230_9044848;chr3L_9055007_9055567 chr3L_9050643_9050679 chr3L_9041962_9043459 100.00 NA 100.00 90.00 NA NA 100.00 100.00 94.12 NA NA 96.00 NA NA 100.00 95.00 93.33 100.00 100.00 100.00 100.00 77.42 NA NA NA NA NA 33.33 83.33 NA 95.24 100.00 100.00 100.00 NA 60.00 88.89 NA NA 83.33 100.00 100.00 NA 87.50 96.15 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA 91.67 NA K alternative_first_exon CG6904 chr3R - chr3R_10970962_10971422,chr3R_10970962_10972151,chr3R_10970962_10972522,chr3R_10970962_10972786;chr3R_10970962_10973196;chr3R_10970962_10972422 chr3R_10970962_10971039 chr3R_10973197_10973329;chr3R_10972423_10973121 chr3R_10971040_10971294 chr3R_10969988_10970961 15.79 18.52 10.42 13.24 5.26 12.20 25.45 7.58 7.87 33.33 11.11 15.69 15.79 15.38 10.20 11.11 10.00 72.86 11.63 15.22 15.15 31.03 31.25 40.91 26.67 8.00 30.43 21.43 16.67 25.00 10.87 22.22 11.11 12.50 21.05 37.50 34.78 37.50 31.58 14.04 13.04 8.43 14.29 19.23 15.62 17.39 16.67 6.82 10.99 23.08 24.00 27.78 18.18 27.27 8.51 28.57 29.41 7.14 K alternative_first_exon tai chr2L + chr2L_9167439_9191614 chr2L_9177631_9191614 chr2L_9166802_9167438 chr2L_9177122_9177630 chr2L_9191615_9191813 83.33 81.25 81.82 90.09 75.00 82.61 91.40 91.35 87.96 77.78 83.33 90.12 91.53 90.57 75.00 91.89 86.67 85.00 85.37 81.67 76.47 83.33 86.67 78.26 84.21 77.27 81.25 72.73 72.22 88.89 82.76 90.91 70.59 88.46 83.33 81.82 73.91 70.59 69.23 80.00 86.67 87.50 91.67 85.71 85.71 85.71 87.50 78.26 88.37 90.91 84.21 85.19 54.55 80.00 75.00 87.50 73.33 76.19 K alternative_first_exon CG6231 chr3R - chr3R_15445103_15446336;chr3R_15445103_15458055 chr3R_15445103_15453165 chr3R_15446337_15446860;chr3R_15458056_15458440 chr3R_15453166_15453476 chr3R_15444807_15445102 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 16.67 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 6.67 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K alternative_first_exon Hrb98DE chr3R + chr3R_24425722_24426427 chr3R_24426291_24426427 chr3R_24425529_24425721 chr3R_24426109_24426290 chr3R_24426428_24426917 77.78 86.67 77.78 73.00 80.49 78.43 83.95 75.97 79.33 68.75 72.22 77.88 80.85 79.66 79.03 76.19 76.27 79.17 73.77 77.70 85.71 76.79 83.95 76.39 72.55 78.65 85.19 82.98 77.78 68.57 68.92 73.21 65.22 79.03 85.19 83.33 87.30 80.43 77.53 71.55 65.38 76.87 74.63 82.81 73.68 74.03 74.14 70.83 72.14 76.12 82.02 87.04 79.49 79.17 78.48 82.54 86.89 68.00 K alternative_first_exon CG12576 chrX - chrX_21878289_21882347 chrX_21878289_21879014 chrX_21882348_21882734 chrX_21879015_21879429 chrX_21876681_21878288 93.41 96.90 96.49 85.96 95.19 95.10 89.00 89.31 92.66 95.00 93.27 95.52 81.72 95.45 97.20 90.29 96.81 88.33 92.47 96.11 91.51 88.72 94.15 95.39 92.59 83.51 95.97 92.94 87.95 94.23 93.41 89.55 92.31 95.95 95.12 91.36 94.65 93.10 94.29 93.57 87.50 95.79 92.68 93.51 91.40 94.74 91.67 92.21 93.26 93.20 93.89 86.42 95.92 93.68 94.50 91.67 96.88 96.97 K alternative_first_exon siz chr3L + chr3L_21028402_21061813;chr3L_21041894_21061813 chr3L_21057802_21061813 chr3L_21027639_21028401;chr3L_21041326_21041893 chr3L_21057091_21057801 chr3L_21061814_21062365 0.00 0.00 0.00 7.14 0.00 0.00 0.00 9.09 5.00 12.50 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38.10 5.56 0.00 0.00 0.00 0.00 18.18 12.50 10.00 0.00 0.00 9.09 6.67 12.50 7.69 5.56 0.00 0.00 10.53 12.50 6.67 0.00 6.25 14.29 0.00 0.00 0.00 6.25 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.11 K alternative_first_exon CG31033 chr3R - chr3R_25659004_25659654 chr3R_25659004_25659524 chr3R_25659655_25659817 chr3R_25659525_25659614 chr3R_25658915_25659003 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon Hrb27C chr2L + chr2L_6922369_6922730,chr2L_6921074_6922730,chr2L_6921492_6922730,chr2L_6922095_6922730;chr2L_6921441_6922730;chr2L_6921674_6922730,chr2L_6921799_6922730 chr2L_6920862_6922730 chr2L_6921286_6921440;chr2L_6921666_6921673 chr2L_6920693_6920861 chr2L_6922731_6922826 83.95 84.21 91.30 87.11 85.71 85.71 84.29 88.43 87.84 NA 86.21 84.00 84.38 87.68 91.25 92.91 86.61 83.33 85.62 84.66 87.27 69.05 84.06 74.55 82.22 85.00 73.47 73.68 72.00 81.58 81.82 81.82 80.65 88.58 83.87 67.57 78.79 82.14 77.78 79.25 76.19 88.10 86.99 78.26 53.33 74.36 71.43 73.58 87.87 78.12 85.29 80.95 85.00 82.35 83.90 87.10 87.88 82.98 N alternative_first_exon Rho1 chr2R + chr2R_11990604_11991115,chr2R_11991027_11991115,chr2R_11990362_11991115;chr2R_11990326_11991115,chr2R_11990398_11991115 chr2R_11990814_11991115 chr2R_11990293_11990325 chr2R_11990604_11990813 chr2R_11991116_11991279 63.64 71.43 41.67 33.33 45.45 46.67 52.63 31.82 50.00 NA 66.67 51.85 43.75 64.29 44.44 40.74 NA 70.59 40.00 50.00 61.54 88.24 69.23 72.22 75.00 58.33 68.18 68.42 74.29 93.75 53.85 73.33 84.85 43.48 53.85 75.00 65.00 58.33 46.67 86.21 81.82 56.25 42.86 87.50 54.17 68.00 58.82 88.89 63.64 58.33 57.89 72.73 78.57 80.00 38.89 63.64 64.71 65.85 K alternative_first_exon ps chr3R + chr3R_5257591_5257750;chr3R_5243723_5257750;chr3R_5254375_5257750 chr3R_5245770_5257750 chr3R_5243664_5243722;chr3R_5254284_5254374 chr3R_5245317_5245769 chr3R_5257751_5258561 61.90 58.06 62.50 67.71 56.25 65.62 66.34 62.93 65.03 39.13 58.54 59.05 56.06 67.86 55.10 66.67 66.00 53.19 61.40 57.60 53.19 67.35 60.29 51.35 63.16 67.44 67.39 60.00 62.96 71.79 63.64 77.78 61.90 63.55 66.67 59.09 62.71 50.00 51.43 65.12 60.00 61.29 71.11 62.30 45.45 70.59 60.00 67.86 60.91 61.90 64.15 54.84 57.14 42.86 55.56 66.67 58.82 69.23 K alternative_first_exon CG1358 chr2R - chr2R_3493750_3495926;chr2R_3493750_3507837;chr2R_3493750_3501965 chr2R_3493750_3501438 chr2R_3495927_3495958;chr2R_3507838_3507944;chr2R_3501966_3502040 chr2R_3501439_3501727 chr2R_3493449_3493749 27.78 19.23 34.62 19.23 32.14 26.09 13.51 27.78 24.49 56.25 9.52 26.19 28.57 25.71 22.86 30.77 25.00 31.25 25.93 23.08 20.00 10.71 27.78 26.67 30.77 31.25 30.77 42.86 28.57 27.27 35.48 27.78 25.00 32.61 42.11 37.50 20.59 25.00 39.13 48.28 30.43 37.14 15.15 36.36 16.00 25.71 31.82 21.88 29.17 27.27 29.41 20.83 56.25 38.46 33.33 23.53 36.84 25.81 K alternative_first_exon spi chr2L - chr2L_19569227_19572142,chr2L_19569227_19577173;chr2L_19569227_19571571;chr2L_19569227_19572499 chr2L_19569227_19577185 chr2L_19571572_19572181;chr2L_19572500_19572610 chr2L_19577186_19577324 chr2L_19567899_19569226 19.57 17.76 15.53 46.82 27.94 19.57 28.65 28.42 23.23 20.00 18.31 30.05 21.01 19.23 25.23 26.84 25.47 19.72 17.61 19.91 15.85 27.71 11.36 12.50 25.30 20.15 17.56 45.65 43.75 14.12 24.83 17.39 8.85 22.92 9.26 22.58 15.38 9.23 13.95 21.94 13.16 21.82 23.58 18.95 18.45 11.46 25.00 11.11 26.07 18.75 14.81 18.56 23.68 15.38 21.94 14.58 16.67 18.31 K alternative_first_exon Rox8 chr3R - chr3R_19872214_19872659,chr3R_19872214_19872663,chr3R_19872214_19872909,chr3R_19872214_19873136,chr3R_19872214_19873214,chr3R_19872214_19873220,chr3R_19872214_19873550;chr3R_19872214_19873834;chr3R_19872214_19873540 chr3R_19872214_19873682 chr3R_19873835_19873987;chr3R_19873541_19873678 chr3R_19873683_19873748 chr3R_19871160_19872213 16.03 9.52 22.86 26.67 27.78 21.74 10.00 32.50 24.56 0.00 19.23 18.75 25.93 19.23 20.00 18.42 25.00 26.32 24.32 28.57 23.08 11.11 2.70 10.00 11.54 18.52 3.85 15.38 8.00 11.11 25.00 7.14 8.33 31.48 8.70 6.45 5.88 15.38 10.53 NA 6.25 15.00 25.00 22.22 0.00 18.18 8.00 12.90 28.12 10.53 7.14 11.11 17.65 20.00 25.00 8.33 10.00 16.67 K alternative_first_exon TER94 chr2R + chr2R_5877895_5877975;chr2R_5876809_5877975 chr2R_5877075_5877975 chr2R_5876666_5876808 chr2R_5876821_5877074 chr2R_5877976_5878078 0.00 0.00 0.00 0.31 0.00 0.00 0.52 0.26 0.17 0.58 0.00 0.20 0.00 0.00 0.00 0.25 0.48 0.46 0.00 0.17 0.00 0.00 0.18 0.33 0.46 0.39 0.00 0.70 0.58 0.49 0.34 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.00 0.20 0.00 0.00 0.00 0.46 0.00 0.68 0.00 0.00 0.30 0.41 0.00 0.00 0.33 0.00 0.00 0.00 K alternative_first_exon CG7816 chr3R - chr3R_25691122_25692883;chr3R_25691122_25693465;chr3R_25691122_25692901;chr3R_25691122_25694365,chr3R_25691122_25694254;chr3R_25691122_25691822 chr3R_25691122_25693711 chr3R_25693466_25693539;chr3R_25692902_25692936;chr3R_25694366_25694618;chr3R_25691823_25691898 chr3R_25693712_25693793 chr3R_25690779_25691121 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon lama chr3L - chr3L_5340784_5347714 chr3L_5340784_5344418 chr3L_5347715_5348389 chr3L_5344419_5344579 chr3L_5340728_5340783 0.00 2.86 0.00 1.56 0.00 0.00 0.00 1.52 1.16 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 0.00 1.67 1.16 0.00 1.92 0.00 1.45 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 1.23 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon Pax chr2L - chr2L_19410644_19410844;chr2L_19410644_19411536;chr2L_19410644_19426205 chr2L_19410644_19419868 chr2L_19411537_19411719;chr2L_19426206_19426424 chr2L_19419869_19420191 chr2L_19410480_19410643 12.17 11.19 12.77 9.80 10.66 8.76 11.50 10.14 10.43 10.75 13.51 11.65 8.33 8.33 9.76 13.95 12.12 11.68 10.49 11.49 9.78 15.84 16.16 12.87 13.04 7.48 13.84 24.04 13.51 16.42 7.27 11.70 14.56 9.80 21.55 15.32 16.07 14.60 16.31 13.73 15.56 11.25 10.95 18.24 16.00 13.16 12.20 12.82 8.31 14.89 13.47 13.01 8.33 15.00 10.33 12.17 7.30 6.31 K alternative_first_exon exd chrX + chrX_15886821_15887504,chrX_15887147_15887504,chrX_15886802_15887504,chrX_15886884_15887504,chrX_15886650_15887504,chrX_15887006_15887504,chrX_15886827_15887504;chrX_15886695_15887504 chrX_15886888_15887504,chrX_15886958_15887504 chrX_15886520_15886694 chrX_15886785_15886887 chrX_15887505_15887806 2.00 3.77 4.00 2.06 2.63 2.38 3.30 2.83 1.34 0.00 0.00 1.90 2.08 3.39 1.89 1.72 0.00 0.00 3.23 0.97 0.00 2.04 1.49 0.00 2.94 2.00 2.04 8.33 0.00 0.00 0.00 5.00 4.17 1.05 2.27 2.56 3.64 0.00 2.22 0.00 0.00 1.90 0.00 3.64 0.00 4.00 5.88 0.00 0.88 5.71 0.00 2.22 0.00 0.00 1.79 2.86 2.78 4.76 K alternative_first_exon SC35 chr2L - chr2L_12433710_12434558 chr2L_12433710_12433834 chr2L_12434559_12434665 chr2L_12433835_12434045 chr2L_12433579_12433709 91.78 95.96 88.95 84.42 95.74 88.44 90.54 52.17 92.41 94.66 91.74 85.55 85.71 90.91 88.82 81.87 91.89 89.60 87.70 85.87 88.89 88.96 92.31 93.06 90.95 89.02 96.05 94.97 91.23 94.32 86.03 95.73 91.62 87.83 90.76 90.69 96.84 95.17 95.94 93.98 94.38 91.78 87.27 96.24 95.31 92.67 92.77 93.56 85.82 95.80 94.12 93.02 92.56 95.08 89.02 96.27 95.49 90.59 K alternative_first_exon CycB chr2R - chr2R_18693591_18694150 chr2R_18693591_18693778 chr2R_18694151_18694490 chr2R_18693779_18694057 chr2R_18693445_18693590 2.82 3.33 3.30 1.21 1.75 3.95 2.04 1.33 1.91 5.13 3.45 2.37 2.67 2.47 0.94 1.96 1.25 3.45 1.85 2.37 2.94 2.33 2.50 1.47 2.27 1.10 4.55 3.85 11.76 4.23 1.11 4.17 5.26 2.99 2.90 1.64 2.33 1.59 4.62 1.98 5.26 3.51 2.47 3.12 2.13 6.85 3.33 8.57 2.82 5.77 1.03 3.92 2.70 3.70 3.74 2.74 3.12 10.53 K alternative_first_exon Pfrx chrX + chrX_19400112_19400518;chrX_19389585_19400518;chrX_19392914_19400518;chrX_19390821_19400518;chrX_19400271_19400518 chrX_19398571_19400518 chrX_19389538_19389584;chrX_19392406_19392913;chrX_19390713_19390820;chrX_19399962_19400270 chrX_19398456_19398570 chrX_19400519_19402937 0.00 NA 0.00 0.00 NA NA 0.00 0.00 7.69 14.29 NA 0.00 NA 20.00 12.50 0.00 NA NA 25.00 22.22 NA 16.67 0.00 0.00 NA NA 0.00 0.00 NA NA NA NA 28.57 0.00 0.00 0.00 0.00 0.00 11.11 10.00 NA 16.67 0.00 0.00 0.00 NA 0.00 10.00 8.33 0.00 20.00 0.00 0.00 0.00 20.00 16.67 NA 0.00 K alternative_first_exon CG7888 chr3L + chr3L_11047460_11050653 chr3L_11050286_11050653 chr3L_11047137_11047459 chr3L_11050259_11050285 chr3L_11050654_11050807 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon Cyp4d1 chrX - chrX_2054282_2055613 chrX_2054282_2054415 chrX_2055614_2056160 chrX_2054416_2055053 chrX_2053658_2054281 31.82 33.33 30.00 18.18 41.67 41.67 35.71 41.67 32.00 20.00 27.27 30.43 33.33 37.50 28.57 46.15 25.00 25.00 38.46 35.14 30.00 20.00 33.33 31.82 23.53 30.77 31.58 25.00 17.65 35.71 48.39 27.27 33.33 35.00 33.33 36.84 32.14 38.89 29.63 34.78 27.27 37.04 33.33 13.33 23.08 23.53 26.32 38.46 41.67 27.27 31.82 36.36 21.43 25.00 31.25 23.08 20.00 35.29 K alternative_first_exon cv-c chr3R - chr3R_10225513_10233875 chr3R_10225513_10230710 chr3R_10233876_10233918 chr3R_10230711_10231164 chr3R_10225441_10225512 3.85 9.09 0.00 0.00 0.00 7.14 11.76 4.00 3.12 0.00 0.00 6.25 8.33 6.67 0.00 5.26 NA 0.00 6.67 3.33 0.00 0.00 3.33 4.35 7.14 0.00 5.26 NA NA NA 5.56 NA NA 4.17 0.00 7.14 3.85 0.00 3.85 5.88 NA 4.17 7.69 0.00 NA NA NA NA 3.12 0.00 0.00 4.76 NA NA 4.17 NA NA NA K alternative_first_exon CaMKI chr4 + chr4_466377_467256,chr4_466896_467256,chr4_466816_467256,chr4_466912_467256;chr4_467113_467256;chr4_466798_467256,chr4_466858_467256 chr4_466592_467256 chr4_466952_467112;chr4_466794_466797 chr4_466146_466591 chr4_467257_467272 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon mld chr3R + chr3R_20415112_20416293;chr3R_20411649_20416293 chr3R_20415155_20416293 chr3R_20411375_20411648 chr3R_20414884_20415154 chr3R_20416294_20417143 87.50 90.00 90.91 78.95 87.50 90.00 82.35 90.48 86.49 100.00 88.89 90.48 91.67 91.67 92.31 81.48 84.62 91.67 75.00 94.74 80.00 66.67 94.12 87.50 71.43 75.00 77.78 NA NA 87.50 76.92 NA 85.71 91.67 88.89 NA 88.89 NA NA 88.24 NA 77.78 85.00 81.82 NA NA 83.33 90.00 96.30 88.89 88.89 85.71 NA NA 81.25 NA NA NA K alternative_first_exon eas chrX + chrX_16172795_16174918;chrX_16172581_16174918,chrX_16172649_16174918,chrX_16173003_16174918 chrX_16174025_16174918 chrX_16173942_16174024 chrX_16174919_16175306 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA 3.23 NA 0.00 NA NA NA 0.00 0.00 NA NA K alternative_first_exon CG42389 chr2L + chr2L_16652913_16657498 chr2L_16657430_16657498 chr2L_16652743_16652912 chr2L_16657115_16657429 chr2L_16657499_16657952 1.56 1.02 1.91 2.93 0.66 0.69 4.52 2.33 1.78 0.70 1.56 1.13 1.59 1.39 1.95 4.44 2.60 1.28 2.58 1.12 1.61 1.58 0.73 0.90 1.21 2.00 0.83 2.09 1.40 1.35 3.50 1.32 0.37 1.64 2.34 1.68 0.00 0.76 0.55 1.58 1.45 1.60 2.94 1.03 0.95 1.87 0.00 0.97 2.19 0.93 1.49 2.59 0.92 2.63 3.33 0.97 2.74 1.94 K alternative_first_exon CG33155,mRpL53 chr2R + chr2R_9841951_9842421 chr2R_9842150_9842421,chr2R_9842367_9842421 chr2R_9841704_9841950 chr2R_9842032_9842149 chr2R_9842422_9842549 0.00 0.00 1.89 1.28 0.00 0.00 0.00 1.67 1.20 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 2.44 0.00 0.00 3.92 0.00 0.00 0.00 0.00 1.54 1.92 0.00 2.86 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 1.32 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon kay chr3R + chr3R_25607566_25617114,chr3R_25607413_25617114,chr3R_25617044_25617114,chr3R_25615618_25617114,chr3R_25616711_25617114,chr3R_25593310_25617114,chr3R_25616533_25617114;chr3R_25599544_25617114;chr3R_25616577_25617114 chr3R_25608870_25617114 chr3R_25598616_25599543;chr3R_25614658_25616576 chr3R_25608333_25608869 chr3R_25617115_25617442 66.85 68.02 68.55 66.85 68.75 66.89 72.96 71.68 72.22 69.68 74.16 67.98 67.28 71.80 68.66 74.85 69.54 69.26 70.76 68.95 76.73 45.91 66.62 63.36 59.38 64.69 64.18 54.08 49.33 58.79 69.02 60.37 54.63 72.74 68.40 57.36 58.21 64.39 58.74 60.39 62.63 69.53 70.05 67.14 56.46 66.60 61.61 58.24 68.55 63.93 65.52 70.63 51.74 64.78 69.82 63.95 57.91 50.40 N alternative_first_exon CG3191 chrX - chrX_2145388_2146756 chrX_2145388_2145704 chrX_2146757_2146893 chrX_2145705_2146017 chrX_2145228_2145387 100.00 NA NA 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 NA NA NA NA NA 100.00 NA 100.00 NA 60.87 100.00 100.00 NA NA 80.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 85.71 100.00 90.91 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 80.00 100.00 100.00 NA 100.00 100.00 100.00 K alternative_first_exon CG31716 chr2L + chr2L_10396850_10398034,chr2L_10396983_10398034,chr2L_10396922_10398034 chr2L_10397475_10398034 chr2L_10396711_10396849 chr2L_10397427_10397474 chr2L_10398035_10398219 0.00 0.00 0.00 2.70 0.00 0.00 4.26 0.00 1.69 NA 0.00 1.75 3.03 2.78 4.76 1.43 0.00 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 4.55 NA 0.00 1.64 7.69 6.67 0.00 0.00 0.00 6.25 NA 0.00 3.57 0.00 0.00 0.00 NA 0.00 0.00 10.00 3.12 6.25 NA 0.00 4.00 8.33 0.00 0.00 K alternative_first_exon CG6928 chr3L + chr3L_11996395_11998353 chr3L_11997646_11998353 chr3L_11996276_11996394 chr3L_11997493_11997645 chr3L_11998354_11998958 16.66 NA NA NA NA NA 11.11 30.00 13.33 NA NA NA NA NA NA 37.50 NA NA NA 10.00 NA 11.11 33.33 NA NA NA 22.22 25.00 NA NA NA NA NA 12.50 NA NA NA NA NA 12.50 NA 10.00 NA NA NA NA NA NA 25.00 NA 20.00 NA NA NA NA NA NA NA K alternative_first_exon rdx chr3R - chr3R_9796825_9796989;chr3R_9796825_9849367;chr3R_9796825_9807355 chr3R_9796825_9852599 chr3R_9796990_9797520;chr3R_9849368_9849616;chr3R_9807356_9809083 chr3R_9852600_9852666 chr3R_9796674_9796824 35.00 35.00 39.39 22.86 40.74 32.14 42.00 37.04 28.21 21.43 37.93 27.54 33.33 39.39 48.72 44.07 32.00 43.33 30.30 31.17 36.00 10.96 34.29 36.21 38.89 35.71 42.86 21.43 27.12 40.00 33.33 40.00 26.00 37.50 30.56 29.55 26.15 28.89 32.14 37.66 40.00 30.00 37.93 37.04 21.88 28.12 30.00 35.29 36.99 47.06 33.33 36.00 33.33 40.00 47.37 43.24 32.14 23.33 N alternative_first_exon CG3563 chr3R + chr3R_10568314_10589932 chr3R_10575996_10589932 chr3R_10567309_10568313 chr3R_10575928_10575995 0.00 NA NA NA NA NA 0.00 0.00 85.71 NA NA 0.00 NA NA NA 66.67 0.00 NA 83.33 75.00 NA 0.00 NA NA NA NA NA 72.73 0.00 NA NA 0.00 0.00 0.00 NA NA NA NA NA 0.00 0.00 62.50 0.00 NA 0.00 0.00 NA 0.00 66.67 0.00 NA NA NA 0.00 NA NA 0.00 0.00 K alternative_first_exon CG8485 chr2R - chr2R_10126696_10126750;chr2R_10126696_10126955 chr2R_10126696_10126880 chr2R_10126956_10127203 chr2R_10126881_10126932 chr2R_10126421_10126695 0.00 0.00 2.70 0.00 0.00 0.00 0.00 0.00 1.49 0.00 0.00 0.00 4.17 0.00 2.78 2.00 4.35 0.00 0.00 1.41 0.00 0.00 3.51 0.00 0.00 0.00 2.56 4.35 0.00 0.00 2.27 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 3.70 3.57 2.56 4.17 0.00 3.12 3.70 0.00 0.00 0.00 0.00 2.33 0.00 0.00 0.00 K alternative_first_exon Ubi-p63E chr3L - chr3L_3901771_3902526 chr3L_3901771_3901852 chr3L_3902527_3902707 chr3L_3901853_3902050 chr3L_3899431_3901770 0.00 0.00 0.00 0.71 0.00 0.00 0.69 0.70 0.52 0.00 0.00 0.76 0.00 0.00 0.00 0.69 0.00 0.00 1.18 0.00 2.38 0.00 0.00 2.13 0.00 0.00 0.00 7.69 0.00 0.00 1.35 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 2.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon Mnt chrX + chrX_3583579_3586985;chrX_3582529_3586985;chrX_3577483_3586985 chrX_3583516_3586985 chrX_3582270_3582528;chrX_3577386_3577482 chrX_3583398_3583515 chrX_3586986_3587965 27.27 NA 33.33 36.36 NA NA 26.67 22.22 25.00 NA NA 60.00 36.36 20.00 NA 26.32 25.00 NA 22.22 28.57 33.33 NA NA NA NA NA NA NA NA NA 20.00 NA NA 31.25 33.33 NA NA NA NA 36.36 NA 36.36 16.67 NA NA NA NA 27.27 25.00 NA NA NA NA NA NA NA NA NA K alternative_first_exon CG15771 chrX + chrX_5650238_5651894 chrX_5650885_5651894 chrX_5649671_5650237 chrX_5650426_5650884 chrX_5651895_5652380 1.90 2.35 2.63 7.58 1.45 1.41 2.27 3.28 3.45 3.33 1.75 1.52 1.64 2.74 2.13 4.63 2.90 2.86 1.33 1.99 1.85 1.69 1.89 1.10 1.69 1.43 3.66 6.00 2.44 1.49 4.00 1.96 1.72 2.70 1.35 1.75 1.10 0.00 1.98 2.21 1.59 1.90 3.08 1.15 1.33 2.27 2.53 1.18 2.24 1.37 0.97 1.56 0.00 1.52 2.33 1.19 2.38 2.67 K alternative_first_exon gro chr3R + chr3R_21868657_21868716,chr3R_21868266_21868716,chr3R_21868622_21868716;chr3R_21868626_21868716;chr3R_21867907_21868716,chr3R_21867987_21868716;chr3R_21868535_21868716 chr3R_21867624_21868716 chr3R_21868542_21868625;chr3R_21867852_21867906;chr3R_21868363_21868534 chr3R_21867432_21867623 chr3R_21868717_21869101 70.59 70.59 74.63 73.68 61.11 70.37 56.96 70.93 64.75 71.79 78.57 74.79 66.04 62.69 68.92 68.93 60.38 61.11 66.67 80.69 71.70 56.90 77.24 72.94 72.92 65.52 55.00 42.50 69.64 59.42 68.06 77.78 77.38 68.18 76.27 69.86 60.00 70.49 63.24 74.47 75.00 70.68 72.00 68.66 80.77 75.00 80.60 79.61 70.00 71.21 71.29 70.31 82.00 70.59 71.25 67.31 63.64 82.95 K alternative_first_exon CG1516 chr2R - chr2R_5743716_5757801;chr2R_5743716_5743780 chr2R_5743716_5747874 chr2R_5757802_5757853;chr2R_5743781_5743915 chr2R_5747875_5748262 chr2R_5743589_5743715 100.00 96.97 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.21 100.00 100.00 97.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 K alternative_first_exon CG42540 chr3L + chr3L_4556187_4563796 chr3L_4558053_4563796 chr3L_4556087_4556186 chr3L_4557275_4558052 chr3L_4563797_4563896 43.81 NA NA 73.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon lola chr2R - chr2R_6421474_6421652,chr2R_6421474_6422304;chr2R_6421474_6422354;chr2R_6421474_6421682;chr2R_6421474_6428849 chr2R_6421474_6430409 chr2R_6422355_6422583;chr2R_6421683_6421862;chr2R_6428850_6429184 chr2R_6430410_6430794 chr2R_6421081_6421473 19.53 20.33 20.99 18.99 25.61 19.53 22.47 21.34 24.30 16.25 25.49 21.47 27.27 24.31 21.69 23.44 23.39 16.67 23.12 22.19 23.89 7.42 21.21 19.69 13.68 20.15 16.53 10.14 5.28 12.38 23.53 11.48 9.48 24.83 19.05 12.43 19.27 16.88 15.62 11.48 9.15 21.16 24.24 13.74 9.48 9.73 17.33 7.93 21.04 20.00 18.92 21.77 14.29 23.40 21.95 18.95 18.64 10.04 K alternative_first_exon CG6854 chr3L + chr3L_15091617_15101715 chr3L_15099169_15101715 chr3L_15091237_15091616 chr3L_15098984_15099168 chr3L_15101716_15102058 75.00 NA 62.50 75.00 NA NA NA 75.00 88.89 NA NA 76.92 NA NA NA 57.14 66.67 NA 42.86 71.43 50.00 NA 87.50 85.71 NA NA 87.50 NA 87.50 NA NA NA 77.78 62.50 60.00 66.67 80.00 71.43 50.00 75.00 71.43 NA NA NA 71.43 75.00 NA 81.82 81.82 78.57 85.71 85.71 NA NA 50.00 NA NA NA K alternative_first_exon Arf79F chr3L - chr3L_22863166_22863946;chr3L_22863166_22865156,chr3L_22863166_22865023 chr3L_22863166_22864559 chr3L_22863947_22864153;chr3L_22865157_22865157 chr3L_22864560_22864855 chr3L_22862942_22863165 18.34 NA NA 22.22 NA NA NA 15.38 30.00 NA NA NA NA NA 10.00 23.08 NA NA NA 7.14 NA NA 36.36 11.11 NA NA 10.00 NA NA 37.50 21.43 NA NA 20.00 NA NA NA NA NA 16.67 NA 0.00 NA NA NA 9.09 NA NA 25.00 NA NA 10.00 NA NA 11.11 NA 22.22 50.00 K alternative_first_exon cnc chr3R - chr3R_19014852_19017417;chr3R_19014852_19016068 chr3R_19014852_19016744,chr3R_19014852_19016561 chr3R_19017418_19017505;chr3R_19016069_19016141 chr3R_19016745_19016842 chr3R_19013599_19014851 26.67 27.27 30.00 23.08 13.33 43.75 24.24 24.14 20.00 11.11 27.27 32.35 44.44 58.33 25.00 50.00 25.00 25.00 40.00 39.58 35.71 8.77 15.38 21.43 22.22 16.67 28.57 12.90 17.39 18.18 29.63 61.54 12.00 40.62 31.25 20.00 12.90 17.86 15.62 19.57 26.67 20.59 31.58 23.53 25.00 45.45 33.33 13.04 32.50 27.78 40.74 29.41 25.00 57.14 27.78 33.33 42.11 44.00 K alternative_first_exon CG3563 chr3R + chr3R_10590015_10613778;chr3R_10568314_10613778;chr3R_10611165_10613778 chr3R_10575996_10613778 chr3R_10567309_10568313;chr3R_10610648_10611164 chr3R_10575928_10575995 chr3R_10613779_10614341 36.84 30.77 38.71 38.60 40.91 33.33 42.50 39.22 43.24 23.53 18.75 38.60 41.67 43.75 33.33 36.17 50.00 37.04 34.48 23.64 36.84 32.00 48.98 41.94 47.62 39.29 52.78 21.28 20.00 42.86 38.71 25.00 21.95 34.69 23.08 43.75 26.47 53.85 37.04 40.38 21.43 36.21 40.00 53.33 31.58 28.00 29.41 26.47 40.68 58.33 45.45 40.00 35.71 26.67 22.22 25.00 23.53 14.29 N alternative_first_exon 4EHP,Syx1A chr3R - chr3R_19927769_19928262;chr3R_19927769_19932546 chr3R_19927769_19929293 chr3R_19932547_19933006 chr3R_19929294_19931465 chr3R_19927322_19927768 98.37 99.02 98.48 98.56 92.98 98.37 98.78 98.63 98.66 97.75 98.17 99.06 99.03 98.28 97.12 98.80 96.52 97.25 97.58 98.11 97.12 96.39 97.75 99.20 98.84 99.07 98.39 95.74 96.03 96.52 98.56 96.55 97.93 99.03 98.95 97.39 98.89 93.52 97.26 97.85 98.67 98.38 99.05 98.51 92.41 98.97 98.85 97.73 99.13 95.31 97.92 96.51 98.77 98.18 99.29 98.46 97.53 99.12 K alternative_first_exon Vap-33-1 chrX + chrX_3844861_3845447;chrX_3843406_3845447 chrX_3843747_3845447 chrX_3843009_3843405 chrX_3843461_3843746 chrX_3845448_3845600 98.81 97.69 98.04 99.60 99.12 98.44 97.30 97.48 99.00 100.00 100.00 97.05 99.27 99.26 98.74 98.56 99.18 99.22 98.93 99.02 97.46 96.15 96.34 98.29 98.63 99.34 99.30 96.84 99.09 98.28 98.80 98.98 99.56 98.34 99.07 99.01 99.31 98.06 98.60 98.34 99.27 97.08 100.00 96.30 99.12 98.81 94.74 100.00 99.28 99.04 98.40 97.83 98.90 98.70 97.78 99.12 95.62 100.00 K alternative_first_exon CG32103 chr3L - chr3L_12398261_12398433;chr3L_12398261_12405110 chr3L_12398261_12401209 chr3L_12405111_12405222 chr3L_12401210_12401746 chr3L_12398102_12398260 79.25 77.98 80.58 80.28 79.80 76.92 82.53 81.55 79.50 74.44 81.00 81.31 79.12 81.82 77.69 82.78 84.62 81.20 83.33 83.52 79.25 66.91 80.32 80.29 74.23 78.07 78.87 77.53 71.43 76.52 82.64 72.46 69.83 79.51 77.45 76.99 80.54 77.14 77.78 72.56 64.94 79.91 79.38 77.04 71.64 75.28 81.18 76.67 83.33 76.25 78.29 81.82 80.72 73.53 79.37 79.52 82.95 71.07 N alternative_first_exon desat1 chr3R + chr3R_8269076_8270520,chr3R_8267942_8270520,chr3R_8269415_8270520;chr3R_8265434_8270520;chr3R_8267331_8270520;chr3R_8269445_8270520 chr3R_8269860_8270520 chr3R_8265322_8265433;chr3R_8267149_8267330;chr3R_8269304_8269444 chr3R_8269763_8269859 chr3R_8270521_8270840 15.69 17.67 15.53 16.63 15.10 16.61 18.00 16.10 15.92 19.19 22.83 17.30 14.49 15.81 16.30 11.71 15.57 13.03 14.96 16.96 15.51 17.12 14.35 18.62 20.09 16.49 14.19 26.74 16.19 13.77 19.47 16.67 7.79 12.26 12.20 13.04 19.00 18.53 16.85 14.99 8.18 16.81 15.04 19.36 11.61 10.17 9.36 10.11 11.81 8.37 15.69 19.86 10.97 12.17 18.95 16.43 12.85 8.66 K alternative_first_exon CG8331 chr2R + chr2R_10059732_10059794;chr2R_10058228_10059794 chr2R_10058957_10059794 chr2R_10057971_10058227 chr2R_10058648_10058956 chr2R_10059795_10060027 6.80 7.56 5.15 4.78 6.47 6.16 6.97 5.94 6.76 11.39 5.83 4.78 4.12 8.59 6.05 5.28 6.21 6.29 6.74 6.25 6.47 20.13 7.14 7.92 9.32 5.88 6.96 8.85 9.56 9.92 7.65 7.03 7.65 7.19 8.63 5.67 9.30 7.50 7.39 5.36 8.02 6.57 4.76 9.19 5.61 6.03 8.11 6.90 5.38 9.22 7.00 5.15 8.68 5.95 6.02 6.80 7.58 6.74 K alternative_first_exon Ca-P60A chr2R - chr2R_19820338_19820541,chr2R_19820338_19820765,chr2R_19820338_19820817,chr2R_19820338_19820955;chr2R_19820338_19821213;chr2R_19820338_19820781 chr2R_19820338_19823102 chr2R_19821214_19821281;chr2R_19820782_19821070 chr2R_19823103_19823219 chr2R_19820190_19820337 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon Aats-glupro chr3R - chr3R_19781028_19781427 chr3R_19781028_19781173 chr3R_19781428_19782490 chr3R_19781174_19781221 chr3R_19779168_19781027 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 0.00 K alternative_first_exon fru chr3R - chr3R_14261513_14303785,chr3R_14261513_14339172;chr3R_14261513_14288988;chr3R_14261513_14272422 chr3R_14261513_14340773 chr3R_14288989_14289003;chr3R_14272423_14273051 chr3R_14340774_14341065 chr3R_14261365_14261512 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 4.17 0.00 0.00 4.55 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 4.55 4.17 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 4.76 9.09 2.56 0.00 7.14 0.00 K alternative_first_exon CG5793 chr3R + chr3R_16953555_16953842 chr3R_16953777_16953842 chr3R_16953446_16953554 chr3R_16953645_16953776 chr3R_16953843_16953939 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA NA 100.00 NA 100.00 NA 100.00 NA NA 100.00 100.00 NA 100.00 NA 100.00 NA NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_first_exon nemy chr2R - chr2R_8548702_8548765;chr2R_8548702_8555339 chr2R_8548702_8552489 chr2R_8555340_8555499 chr2R_8552490_8553315 chr2R_8548478_8548701 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon CLIP-190 chr2L + chr2L_17385896_17394432 chr2L_17389531_17394432 chr2L_17385561_17385895 chr2L_17389341_17389530 chr2L_17394433_17394492 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon CG17838 chr3R + chr3R_16609303_16617466;chr3R_16606550_16617466;chr3R_16616055_16617466 chr3R_16598605_16617466 chr3R_16608705_16609302;chr3R_16605654_16606549;chr3R_16615708_16616054 chr3R_16598518_16598604 chr3R_16617467_16617585 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon Rab5 chr2L - chr2L_2361586_2361738,chr2L_2361586_2362590,chr2L_2361586_2362869,chr2L_2361586_2364302,chr2L_2361586_2364480,chr2L_2361586_2364594,chr2L_2361586_2364836;chr2L_2361586_2364640,chr2L_2361586_2364312;chr2L_2361586_2364889;chr2L_2361586_2362674;chr2L_2361586_2363404 chr2L_2361586_2365060 chr2L_2364641_2364697;chr2L_2364890_2364952;chr2L_2362675_2362761;chr2L_2363405_2363501 chr2L_2365061_2365362 chr2L_2361160_2361585 2.63 3.06 3.48 1.75 1.89 3.26 3.11 3.17 3.61 3.64 2.94 2.44 2.56 2.65 2.19 3.40 3.45 1.82 3.50 2.36 2.65 0.78 3.54 3.09 2.44 2.63 3.85 3.33 1.15 2.80 4.58 1.09 0.46 4.63 3.66 3.53 1.71 3.08 1.69 2.22 2.08 2.86 5.32 0.93 1.69 2.41 0.92 1.52 4.37 1.12 4.21 3.37 1.61 1.45 2.19 2.02 1.53 0.89 K alternative_first_exon CR42549,mura chr3R - chr3R_5375533_5377037;chr3R_5375533_5377487 chr3R_5375533_5377422 chr3R_5377038_5377079;chr3R_5377488_5377528 chr3R_5377423_5377470 chr3R_5375500_5375532 2.38 NA NA 0.00 NA NA 0.00 4.76 0.00 NA NA 9.09 0.00 NA NA NA NA NA NA NA NA 8.00 0.00 8.33 NA NA NA NA NA NA NA NA NA 7.14 NA NA 0.00 NA 7.69 0.00 NA 4.76 NA 0.00 NA NA NA NA 0.00 7.69 NA 8.33 NA NA 0.00 7.69 NA NA K alternative_first_exon ttk chr3R + chr3R_27550933_27552853,chr3R_27552215_27552853,chr3R_27552651_27552853;chr3R_27551595_27552853;chr3R_27551054_27552853 chr3R_27539992_27552853 chr3R_27551503_27551594;chr3R_27550731_27551053 chr3R_27539591_27539991 chr3R_27552854_27553156 8.33 4.76 5.88 5.26 6.25 4.55 10.34 7.14 8.93 6.25 6.67 7.50 4.76 3.33 14.81 6.45 13.04 4.76 3.85 7.89 7.14 14.29 11.11 10.00 13.33 4.55 4.00 15.00 12.50 12.50 11.11 16.67 15.00 6.82 8.00 15.79 12.00 0.00 4.17 12.82 14.29 9.52 4.17 8.33 0.00 10.53 6.67 13.64 8.16 22.73 12.50 9.52 7.69 14.29 10.71 10.00 6.25 8.33 K alternative_first_exon d4 chr2R + chr2R_1151501_1182301 chr2R_1182218_1182301 chr2R_1151453_1151500 chr2R_1181588_1182217 chr2R_1182302_1182562 95.00 100.00 100.00 95.00 100.00 100.00 94.74 94.74 96.00 88.89 91.67 94.74 91.67 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 94.44 94.12 100.00 100.00 100.00 100.00 100.00 91.67 92.31 90.00 94.44 85.71 92.31 100.00 93.33 100.00 95.00 100.00 100.00 92.59 88.89 100.00 92.31 93.33 91.67 93.75 95.83 94.44 92.86 100.00 93.33 100.00 100.00 93.33 90.91 100.00 K alternative_first_exon CG33232 chr3L + chr3L_2478728_2484563;chr3L_2467270_2484563 chr3L_2483377_2484563 chr3L_2478644_2478727;chr3L_2466903_2467269 chr3L_2483281_2483376 chr3L_2484564_2484837 0.00 0.00 0.00 9.09 NA 16.67 0.00 0.00 6.25 NA 0.00 0.00 0.00 11.11 0.00 0.00 0.00 0.00 8.33 0.00 20.00 NA 0.00 NA NA 0.00 20.00 NA NA NA 0.00 NA NA 0.00 0.00 20.00 0.00 NA 0.00 14.29 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 33.33 0.00 0.00 NA NA 0.00 NA NA NA K alternative_first_exon Dlic chrX + chrX_11049262_11055093 chrX_11054582_11055093 chrX_11049067_11049261 chrX_11054486_11054581 chrX_11055094_11055284 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon btsz chr3R - chr3R_10634534_10649584;chr3R_10634534_10634988 chr3R_10634534_10639970 chr3R_10649585_10649708;chr3R_10634989_10636008 chr3R_10639971_10646665 chr3R_10634349_10634533 100.00 NA NA 100.00 NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA K alternative_first_exon CG42345 chr2R + chr2R_1301587_1311254 chr2R_1303923_1311254 chr2R_1301241_1301586 chr2R_1303857_1303922 chr2R_1311255_1311744 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon Vha16-1 chr2R - chr2R_2519646_2519840;chr2R_2519646_2520499 chr2R_2519646_2519828,chr2R_2519646_2519810 chr2R_2520500_2520633 chr2R_2519829_2519886 chr2R_2519532_2519645 46.04 44.07 48.21 48.74 48.99 45.38 37.34 39.71 54.23 47.80 50.53 45.75 48.17 47.29 46.20 41.62 45.77 52.42 45.91 54.56 52.63 52.76 46.99 50.00 44.51 40.58 41.72 56.72 39.89 45.85 47.46 45.16 43.85 45.59 41.04 32.59 50.99 54.48 57.99 52.09 32.20 47.88 47.58 37.61 47.94 37.71 50.51 38.39 45.58 52.79 45.34 44.35 56.90 43.53 46.04 41.98 57.96 38.15 K alternative_first_exon zfh1 chr3R + chr3R_26609555_26609664;chr3R_26600420_26609664 chr3R_26609373_26609664 chr3R_26599709_26600419 chr3R_26608980_26609372 chr3R_26609665_26611663 0.50 0.47 0.24 1.25 0.52 0.27 1.08 1.12 0.77 0.46 0.68 0.51 0.73 1.03 0.66 1.79 1.28 0.33 0.99 0.26 0.74 0.23 0.57 0.28 0.57 1.08 0.92 1.06 0.14 0.20 0.71 0.43 0.24 0.99 0.50 1.07 0.09 0.25 0.07 0.42 0.50 0.45 1.01 0.42 0.11 0.45 0.31 0.53 0.64 0.26 0.74 1.09 0.23 0.17 0.69 0.34 0.19 0.10 K alternative_first_exon CG10249 chr2R - chr2R_10791070_10791577 chr2R_10791070_10791135 chr2R_10791578_10792956 chr2R_10791136_10791298 chr2R_10790641_10791069 0.96 0.00 0.00 1.82 3.57 2.86 2.78 1.52 1.16 0.00 3.23 0.00 3.51 0.00 2.38 0.00 2.38 1.85 0.00 0.96 3.03 3.33 4.08 2.63 0.00 0.00 0.00 0.00 5.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 2.22 2.27 0.00 1.30 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 2.86 0.00 2.63 0.00 2.27 3.57 2.70 2.22 K alternative_first_exon Mgstl chrX + chrX_20914485_20914706;chrX_20913675_20914706 chrX_20914329_20914706 chrX_20913516_20913674 chrX_20914099_20914328 chrX_20914707_20915134 99.61 99.61 99.50 99.68 100.00 100.00 99.60 99.70 99.52 100.00 100.00 100.00 100.00 100.00 100.00 99.22 100.00 99.38 99.58 99.64 100.00 99.55 100.00 99.47 100.00 99.41 100.00 100.00 98.06 99.21 99.58 99.31 99.45 99.66 99.41 100.00 99.35 100.00 99.45 100.00 99.35 99.47 100.00 99.61 99.60 99.62 100.00 100.00 99.38 99.26 100.00 99.21 99.12 100.00 99.57 99.65 98.80 99.50 K alternative_first_exon SPoCk chr3L + chr3L_22766852_22770210,chr3L_22768238_22770210;chr3L_22768472_22770210;chr3L_22743093_22770210 chr3L_22766817_22770210 chr3L_22768418_22768471;chr3L_22742544_22743092 chr3L_22766638_22766816 chr3L_22770211_22771924 43.86 37.50 39.47 55.17 57.14 56.00 42.86 62.07 44.19 31.91 48.57 24.44 62.07 57.14 41.30 50.00 43.33 60.71 64.71 16.28 32.00 40.48 43.86 42.86 58.06 35.00 36.73 41.18 29.41 56.25 47.37 25.00 44.83 45.00 46.15 15.91 42.42 50.00 35.09 35.09 30.43 53.73 44.74 51.02 33.33 37.14 42.31 41.30 46.38 52.00 34.88 55.56 50.00 38.46 54.00 37.50 45.00 52.63 K alternative_first_exon Fim chrX - chrX_17183071_17195392;chrX_17183071_17189085 chrX_17183071_17185283 chrX_17195393_17196011;chrX_17189086_17189491 chrX_17185284_17185701 chrX_17181960_17183070 29.17 31.68 31.43 33.33 29.67 33.33 20.00 28.97 26.73 42.55 29.89 23.47 16.50 25.76 27.34 32.47 25.00 33.94 27.43 24.68 37.38 23.38 33.33 30.48 26.09 24.32 26.21 37.50 19.32 34.06 30.18 31.15 25.44 27.72 35.34 16.25 34.65 32.89 29.17 28.10 29.07 29.10 26.45 44.53 32.26 30.17 22.58 25.00 29.66 33.33 28.36 38.14 25.53 32.65 31.79 35.38 21.43 21.43 K alternative_first_exon Idh chr3L - chr3L_8351036_8351115;chr3L_8351036_8351655 chr3L_8351036_8353892 chr3L_8351116_8351225;chr3L_8351656_8352179 chr3L_8353893_8354031 chr3L_8349503_8351035 23.81 NA NA NA NA NA 33.33 NA NA 55.56 NA 14.29 NA NA NA NA NA NA NA 0.00 NA 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_first_exon Alh chr3R - chr3R_2947476_2949625 chr3R_2947476_2949361 chr3R_2949626_2949907 chr3R_2949362_2949460 chr3R_2946997_2947475 0.00 0.00 20.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.75 0.00 11.11 10.00 12.50 11.11 0.00 0.00 15.00 0.00 11.11 0.00 7.69 0.00 0.00 0.00 11.11 0.00 0.00 0.00 NA 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 NA 6.25 0.00 0.00 16.67 0.00 NA 18.75 0.00 0.00 8.33 0.00 0.00 NA 9.09 0.00 0.00 14.29 K alternative_first_exon WASp chr3R - chr3R_24652897_24656223 chr3R_24652897_24653006 chr3R_24656224_24656399 chr3R_24653007_24653105 chr3R_24652669_24652896 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_first_exon crc chr2L + chr2L_21312213_21318126;chr2L_21312209_21318126;chr2L_21312044_21318126 chr2L_21315539_21318126 chr2L_21312098_21312208;chr2L_21311753_21312043 chr2L_21314366_21315538 chr2L_21318127_21318419 7.38 8.86 8.17 4.88 6.75 7.38 6.56 5.99 8.83 4.30 6.62 6.09 7.97 9.63 7.14 14.54 6.82 7.18 7.68 6.65 6.88 12.16 7.35 7.80 6.35 4.94 7.53 14.09 8.23 8.52 6.48 8.82 7.27 7.03 11.72 14.46 6.06 12.23 5.95 10.29 5.90 6.48 7.79 7.11 8.22 8.92 7.39 11.11 6.58 5.37 9.37 9.25 8.13 6.48 5.91 7.64 6.83 7.83 K alternative_first_exon siz chr3L + chr3L_21057802_21061813;chr3L_21028402_21061813 chr3L_21041894_21061813 chr3L_21057091_21057801;chr3L_21027639_21028401 chr3L_21041326_21041893 chr3L_21061814_21062365 0.00 0.00 0.00 7.14 0.00 11.11 9.09 9.09 5.00 0.00 0.00 5.88 0.00 12.50 0.00 10.00 0.00 12.50 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon wdp chr2R - chr2R_18195762_18197434,chr2R_18195762_18198647;chr2R_18195762_18199200 chr2R_18195762_18198588 chr2R_18199201_18199425 chr2R_18198589_18198811 chr2R_18195713_18195761 21.43 14.29 12.50 18.75 NA 16.67 27.27 33.33 32.00 9.62 NA 19.05 14.29 25.00 27.27 25.00 16.67 8.33 20.00 22.22 20.00 11.76 28.57 24.00 6.25 10.00 16.00 9.09 13.33 26.67 15.38 13.33 23.08 28.57 36.00 25.00 30.00 23.08 12.50 44.74 14.29 21.05 30.77 13.33 21.05 27.78 23.53 27.59 30.43 31.25 15.00 26.32 17.65 21.43 22.22 15.38 23.81 22.22 K alternative_first_exon Hmgs chr2R + chr2R_12224952_12226951,chr2R_12224482_12226951;chr2R_12224369_12226951;chr2R_12225927_12226951,chr2R_12225942_12226951 chr2R_12226703_12226951 chr2R_12223595_12224368;chr2R_12225809_12225926 chr2R_12226622_12226702 chr2R_12226952_12228760 0.00 0.00 0.00 0.00 5.56 4.76 0.00 0.00 0.00 4.35 0.00 3.28 0.00 0.00 0.00 0.00 0.00 4.55 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 3.45 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon ago chr3L - chr3L_4251841_4253988;chr3L_4251841_4254127 chr3L_4251841_4251981 chr3L_4253989_4254052;chr3L_4254128_4254309 chr3L_4251982_4252119 chr3L_4248724_4251840 0.00 0.00 0.00 1.89 0.00 0.00 1.82 3.17 1.18 0.00 0.00 1.61 0.00 0.00 0.00 1.49 0.00 0.00 0.00 1.69 0.00 3.12 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 0.00 0.00 3.33 0.00 4.17 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 0.00 K alternative_first_exon CG6950 chr3R - chr3R_7647542_7647697;chr3R_7647542_7647913;chr3R_7647542_7647628 chr3R_7647542_7648144 chr3R_7647914_7647955;chr3R_7647629_7647839 chr3R_7648145_7648210 chr3R_7647002_7647541 63.30 57.14 81.25 62.50 88.89 64.29 46.67 52.63 62.96 NA 77.78 61.90 70.00 70.00 66.67 66.67 NA 66.67 80.00 68.00 63.64 NA 12.50 NA NA NA NA NA NA NA 53.85 NA 81.82 61.11 NA NA 37.50 NA NA 68.75 NA 60.87 NA 42.86 NA 66.67 NA 55.56 60.00 NA NA NA NA NA 60.00 NA 57.14 70.00 N alternative_first_exon Pde8 chr2R + chr2R_19547435_19547916;chr2R_19545152_19547916;chr2R_19546851_19547916,chr2R_19546876_19547916 chr2R_19547223_19547916 chr2R_19545099_19545151;chr2R_19546810_19546850 chr2R_19547053_19547222 chr2R_19547917_19548056 95.34 80.00 100.00 75.00 94.44 93.75 100.00 89.66 95.56 94.12 93.33 94.44 100.00 95.45 100.00 95.24 94.44 100.00 87.50 94.74 100.00 98.00 96.30 94.12 93.75 93.33 96.88 100.00 95.00 100.00 90.91 100.00 96.30 96.67 87.50 100.00 96.15 100.00 100.00 91.89 100.00 90.91 100.00 100.00 100.00 93.75 100.00 96.00 90.62 NA 81.08 84.62 72.73 100.00 90.91 90.00 100.00 92.86 K alternative_first_exon CycE chr2L - chr2L_15730837_15737627 chr2L_15730837_15731001 chr2L_15737628_15737964 chr2L_15731002_15731780 chr2L_15729566_15730836 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon SPoCk chr3L + chr3L_22766852_22770210,chr3L_22768238_22770210;chr3L_22766817_22770210;chr3L_22743093_22770210 chr3L_22768472_22770210 chr3L_22766638_22766816;chr3L_22742544_22743092 chr3L_22768418_22768471 chr3L_22770211_22771924 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 K alternative_first_exon east chrX + chrX_1904994_1908374,chrX_1906691_1908374,chrX_1907819_1908374,chrX_1907076_1908374,chrX_1906701_1908374,chrX_1906941_1908374;chrX_1906435_1908374 chrX_1907240_1908374 chrX_1906345_1906434 chrX_1907163_1907239 chrX_1908375_1912037 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA NA 0.00 NA NA NA 5.00 NA NA 6.25 NA NA 0.00 NA 0.00 NA NA NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA NA K alternative_first_exon arm chrX - chrX_1793073_1793389,chrX_1793073_1793734,chrX_1793073_1793794,chrX_1793073_1794406;chrX_1793073_1794076;chrX_1793073_1794542 chrX_1793073_1793431,chrX_1793073_1793413 chrX_1794077_1794222;chrX_1794543_1794673 chrX_1793432_1793643 chrX_1793013_1793072 10.14 10.20 12.95 8.41 7.29 9.68 6.25 7.97 9.47 11.76 6.90 7.53 2.52 10.20 10.62 6.67 12.22 8.08 8.88 7.89 10.75 9.56 13.01 13.13 11.36 6.38 6.67 9.86 10.89 8.24 10.81 11.84 13.73 12.93 23.66 6.10 5.45 9.09 9.20 9.65 10.23 9.27 11.20 15.17 13.16 18.25 10.23 11.56 8.41 16.46 10.31 9.65 15.79 11.54 9.36 9.47 10.14 14.06 K alternative_first_exon Ald chr3R - chr3R_22083764_22086879;chr3R_22083764_22087057;chr3R_22083764_22086875;chr3R_22083764_22084708 chr3R_22083764_22085523 chr3R_22087058_22087313;chr3R_22086876_22087046;chr3R_22084709_22084996 chr3R_22085524_22085554 chr3R_22082947_22083763 30.43 14.29 35.11 32.72 32.54 29.65 25.67 33.24 28.14 31.76 33.85 28.33 36.36 20.54 32.08 24.42 29.12 30.99 33.07 35.17 28.70 50.94 0.41 0.82 1.20 29.00 2.18 34.86 50.46 59.36 24.36 60.24 79.07 30.43 38.12 37.70 1.51 0.45 0.44 47.14 62.24 31.85 30.73 43.46 62.85 51.13 0.78 62.38 26.10 1.15 0.87 1.24 16.90 1.63 26.73 2.29 1.85 68.05 K alternative_first_exon rdx chr3R - chr3R_9796825_9849367;chr3R_9796825_9807355;chr3R_9796825_9852599 chr3R_9796825_9796989 chr3R_9849368_9849616;chr3R_9807356_9809083;chr3R_9852600_9852666 chr3R_9796990_9797520 chr3R_9796674_9796824 0.00 0.00 0.00 1.43 0.00 0.00 0.00 1.85 2.56 3.57 0.00 1.45 3.70 3.03 0.00 1.69 0.00 3.33 0.00 1.30 0.00 1.37 1.43 0.00 0.00 3.57 0.00 2.38 1.69 0.00 3.03 0.00 2.00 0.00 0.00 2.27 0.00 0.00 0.00 1.30 0.00 1.67 0.00 1.85 0.00 3.12 0.00 0.00 2.74 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 3.33 K alternative_first_exon Pde8 chr2R + chr2R_19556891_19559498;chr2R_19557901_19559498 chr2R_19553559_19559498 chr2R_19556630_19556890;chr2R_19557425_19557900 chr2R_19553474_19553558 chr2R_19559499_19559611 89.13 91.84 91.40 86.99 88.89 92.31 91.01 90.83 86.44 73.77 86.79 88.27 90.57 90.24 87.64 88.75 85.71 89.86 91.03 90.00 89.47 86.50 82.28 86.82 86.84 89.47 88.44 74.29 86.52 88.37 90.43 91.04 84.52 86.99 88.89 87.42 88.48 88.18 89.19 93.62 90.32 89.13 87.93 83.66 93.02 88.29 92.00 83.24 89.38 84.48 89.80 89.86 91.30 90.67 89.69 91.86 93.41 90.60 K alternative_first_exon CG7145 chr3L - chr3L_21832932_21833106;chr3L_21832932_21834330 chr3L_21832932_21833198,chr3L_21832932_21833150 chr3L_21834331_21834464 chr3L_21833199_21833227 chr3L_21832766_21832931 68.75 NA 58.33 64.29 63.64 70.00 69.57 70.00 78.12 NA NA 70.37 72.73 68.75 NA 69.57 73.33 75.00 66.67 72.73 NA NA 55.56 NA NA 70.59 NA NA 66.67 NA 70.59 NA NA 82.61 NA 44.44 63.64 NA NA 52.94 66.67 60.00 45.45 44.44 NA NA NA 66.67 73.08 NA NA NA NA NA 58.82 NA NA 70.00 K alternative_first_exon CG7082 chr2L + chr2L_2222443_2223242;chr2L_2222299_2223242;chr2L_2222771_2223242 chr2L_2220952_2223242 chr2L_2222106_2222298;chr2L_2222657_2222770 chr2L_2220767_2220951 chr2L_2223243_2223633 90.62 82.35 93.75 88.24 91.67 70.59 86.21 80.49 89.36 91.67 84.62 94.87 90.91 89.29 95.00 90.48 83.33 90.00 81.48 89.19 100.00 94.12 90.48 92.31 100.00 85.71 100.00 90.00 77.78 94.74 82.61 90.91 94.12 89.19 93.33 93.33 100.00 88.89 85.71 95.45 73.33 90.62 77.27 94.12 91.67 82.61 94.74 85.71 91.84 100.00 94.74 92.86 100.00 91.67 84.62 89.47 100.00 80.65 K alternative_first_exon dl chr2L - chr2L_17443006_17448277;chr2L_17443006_17449295 chr2L_17443006_17445248 chr2L_17448278_17448510;chr2L_17449296_17449368 chr2L_17445249_17445567 chr2L_17442652_17443005 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 5.00 4.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 1.67 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon homer chr2L - chr2L_6722431_6723192 chr2L_6722431_6722796 chr2L_6723193_6723355 chr2L_6722797_6722858 chr2L_6722142_6722430 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 2.33 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 5.00 0.00 16.67 0.00 0.00 0.00 0.00 4.76 0.00 0.00 NA 0.00 5.88 5.26 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 K alternative_first_exon Rab5 chr2L - chr2L_2361586_2361738,chr2L_2361586_2362590,chr2L_2361586_2362869,chr2L_2361586_2364302,chr2L_2361586_2364480,chr2L_2361586_2364594,chr2L_2361586_2364836;chr2L_2361586_2364640,chr2L_2361586_2364312;chr2L_2361586_2364889;chr2L_2361586_2362674;chr2L_2361586_2365060 chr2L_2361586_2363404 chr2L_2364641_2364697;chr2L_2364890_2364952;chr2L_2362675_2362761;chr2L_2365061_2365362 chr2L_2363405_2363501 chr2L_2361160_2361585 7.08 9.18 5.22 9.21 5.66 5.43 5.70 5.88 5.72 3.64 5.88 7.32 5.98 7.08 8.03 7.77 6.90 5.45 7.69 2.65 4.42 7.75 7.08 10.31 10.98 3.51 11.54 10.00 4.60 4.67 7.63 3.26 2.30 5.56 7.32 7.06 7.69 10.77 10.17 7.41 3.12 6.94 7.45 11.11 2.54 3.01 8.26 3.79 7.42 11.24 14.74 12.36 4.84 7.25 9.49 9.09 11.45 1.78 K alternative_first_exon CG42245,MEP-1 chr3L + chr3L_2636996_2637067;chr3L_2636968_2637067;chr3L_2633810_2637067 chr3L_2636002_2637067 chr3L_2636905_2636967;chr3L_2633538_2633809 chr3L_2635762_2636001 chr3L_2637068_2639553 25.49 25.23 24.27 29.30 28.57 24.44 27.01 26.42 28.88 17.39 25.93 29.35 31.78 32.77 23.30 31.14 27.66 25.96 31.01 26.94 27.38 19.71 26.51 26.15 29.17 25.49 18.97 29.81 13.91 15.45 23.77 18.64 15.33 32.29 28.18 29.73 20.00 21.84 20.65 21.56 12.79 27.52 36.17 26.92 22.39 17.59 22.22 17.49 31.71 21.51 25.30 28.57 16.36 19.64 28.57 22.73 25.00 19.64 K alternative_first_exon CG33232 chr3L + chr3L_2483377_2484563;chr3L_2467270_2484563 chr3L_2478728_2484563 chr3L_2483281_2483376;chr3L_2466903_2467269 chr3L_2478644_2478727 chr3L_2484564_2484837 0.00 0.00 0.00 9.09 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 14.29 0.00 0.00 0.00 0.00 16.67 0.00 25.00 0.00 NA 0.00 NA NA 0.00 0.00 NA NA NA 0.00 NA NA 8.33 0.00 0.00 0.00 NA 0.00 0.00 NA 7.14 0.00 0.00 NA NA NA 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA K alternative_first_exon CG42514 chr3L - chr3L_16487041_16488399 chr3L_16487041_16488010 chr3L_16488400_16488636 chr3L_16488011_16488368 chr3L_16486246_16487040 32.05 40.00 16.67 57.14 9.09 25.00 44.44 30.77 30.00 NA NA 35.71 40.00 40.00 22.22 50.00 22.22 22.22 30.00 26.67 NA NA 42.86 37.50 NA 14.29 NA NA NA 40.00 50.00 33.33 NA 26.67 NA 60.00 13.33 NA NA 27.27 50.00 16.67 25.00 NA 16.67 60.00 NA 25.00 41.18 50.00 62.50 NA 10.00 NA 18.18 NA 40.00 37.50 K alternative_first_exon CG6904 chr3R - chr3R_10970962_10971422,chr3R_10970962_10972151,chr3R_10970962_10972522,chr3R_10970962_10972786;chr3R_10970962_10972422;chr3R_10970962_10971039 chr3R_10970962_10973196 chr3R_10972423_10973121;chr3R_10971040_10971294 chr3R_10973197_10973329 chr3R_10969988_10970961 69.44 66.67 79.17 66.18 89.47 75.61 56.36 81.82 76.40 52.38 70.37 74.51 73.68 73.08 83.67 71.11 78.00 18.57 76.74 69.57 72.73 48.28 40.62 36.36 40.00 80.00 39.13 46.43 56.67 55.00 71.74 66.67 69.44 76.56 42.11 37.50 47.83 31.25 47.37 71.93 69.57 80.72 74.29 69.23 78.12 60.87 58.33 79.55 76.92 53.85 48.00 38.89 72.73 54.55 78.72 50.00 47.06 76.19 K alternative_first_exon CG3838 chr2L + chr2L_9569199_9571476 chr2L_9571415_9571476 chr2L_9568892_9569198 chr2L_9570317_9571414 chr2L_9571477_9571753 5.88 4.76 5.00 6.45 8.33 7.69 11.11 4.17 5.26 9.09 10.00 6.45 5.88 7.14 4.76 7.14 7.69 6.67 6.25 5.13 15.38 12.50 3.57 3.45 7.14 7.14 4.35 8.33 5.88 6.67 7.14 5.88 3.57 7.69 4.55 7.69 5.26 4.76 4.35 6.25 8.33 3.12 7.69 7.14 5.56 4.17 4.76 4.55 7.14 4.00 3.23 5.56 5.26 5.88 5.26 3.70 3.03 3.45 K alternative_first_exon CG1553 chr2R - chr2R_3692444_3693730 chr2R_3692444_3692926,chr2R_3692444_3692605 chr2R_3693731_3693904 chr2R_3692927_3693047 chr2R_3691017_3692443 34.62 30.77 31.82 41.67 45.45 23.08 48.78 34.62 29.17 NA 35.71 24.44 34.48 34.48 21.74 26.92 25.00 23.53 25.71 26.67 35.71 50.00 31.82 35.71 30.77 38.10 43.75 38.46 68.75 46.67 37.50 44.44 41.67 30.91 40.91 29.41 NA 25.00 37.50 29.63 50.00 24.24 23.08 56.25 NA 47.37 27.27 54.17 36.96 36.36 22.22 33.33 NA 42.86 31.03 45.45 33.33 57.14 K alternative_first_exon Bx chrX + chrX_18429458_18460728 chrX_18460658_18460728 chrX_18428698_18429457 chrX_18460370_18460657 chrX_18460729_18461171 92.31 92.86 92.86 88.89 88.89 100.00 94.12 90.48 86.21 95.24 100.00 96.55 88.89 92.31 93.75 94.74 87.50 92.31 90.91 92.59 88.89 75.00 94.12 90.00 90.91 93.75 94.74 100.00 91.67 91.67 92.31 87.50 83.33 93.75 91.67 86.67 90.91 94.44 95.83 94.74 85.71 96.00 90.91 93.33 100.00 88.24 92.31 78.57 89.47 100.00 93.75 93.75 90.91 90.00 94.12 92.86 92.31 87.50 K alternative_first_exon Pk61C chr3L + chr3L_135385_135457,chr3L_129909_135457,chr3L_134082_135457,chr3L_132936_135457,chr3L_131959_135457,chr3L_131934_135457;chr3L_129889_135457;chr3L_132810_135457 chr3L_132056_135457,chr3L_132531_135457 chr3L_129452_129888;chr3L_132733_132809 chr3L_131849_132055 chr3L_135458_135842 12.50 18.57 13.83 17.32 10.67 11.27 20.44 17.49 15.28 6.90 8.41 17.93 16.51 14.58 17.53 16.03 13.79 10.29 13.27 12.11 10.71 4.21 10.99 11.11 15.09 17.50 14.29 7.89 12.50 11.24 11.25 11.11 7.48 14.55 9.23 16.95 14.61 10.91 13.79 12.15 5.26 17.49 14.74 12.50 12.12 12.50 12.50 5.88 12.88 7.69 13.41 12.28 21.21 14.29 9.52 14.29 10.53 13.79 K alternative_first_exon CG8920 chr2R + chr2R_16208192_16209182,chr2R_16208422_16209182;chr2R_16207528_16209182 chr2R_16208194_16209182 chr2R_16207300_16207527 chr2R_16208002_16208193 chr2R_16209183_16211729 86.96 91.43 87.50 75.76 88.89 89.47 83.33 86.49 92.31 87.50 80.00 84.21 83.33 85.00 96.15 81.82 92.59 92.00 76.19 81.40 88.24 94.00 84.44 87.80 86.67 86.96 90.00 79.17 94.44 92.31 90.00 81.25 82.14 87.88 87.50 81.82 90.91 93.10 90.70 81.08 85.71 87.88 87.50 85.71 81.82 86.36 81.48 85.19 88.37 66.67 80.39 89.29 92.31 84.62 84.85 92.31 95.24 80.00 K alternative_first_exon Mvl chr3R - chr3R_16884191_16884912,chr3R_16884191_16885834,chr3R_16884191_16885988;chr3R_16884191_16886466 chr3R_16884191_16886003 chr3R_16886467_16886517 chr3R_16886004_16886375 chr3R_16883983_16884190 85.71 86.84 76.19 85.53 73.68 79.41 84.91 81.33 78.26 86.21 84.21 82.19 81.82 91.67 86.67 87.72 73.68 77.78 84.31 90.54 78.57 88.10 88.24 84.44 80.00 79.41 90.48 82.14 93.94 87.88 79.55 88.00 97.22 85.94 93.10 95.24 86.96 88.24 85.37 89.47 90.91 79.01 80.65 84.44 85.19 94.59 85.71 87.27 88.00 76.67 92.16 86.84 76.00 100.00 81.63 88.46 81.82 92.31 K alternative_first_exon Hrb27C chr2L + chr2L_6922369_6922730,chr2L_6921074_6922730,chr2L_6921492_6922730,chr2L_6922095_6922730;chr2L_6921674_6922730,chr2L_6921799_6922730;chr2L_6920862_6922730 chr2L_6921441_6922730 chr2L_6921666_6921673;chr2L_6920693_6920861 chr2L_6921286_6921440 chr2L_6922731_6922826 8.72 7.89 5.43 6.70 11.11 9.52 8.57 7.87 7.90 NA 8.62 10.86 8.33 7.97 6.25 5.22 7.14 12.12 8.22 9.09 7.27 21.43 8.70 14.55 13.33 8.75 14.29 23.68 16.00 5.26 11.82 13.64 12.90 6.85 9.68 21.62 15.15 14.29 11.11 16.98 14.29 7.74 6.50 13.04 20.00 10.26 14.29 16.98 6.69 6.25 10.29 7.94 5.00 5.88 7.63 6.45 6.06 8.51 K alternative_first_exon Eip63E chr3L + chr3L_3543708_3552786;chr3L_3516829_3552786 chr3L_3546132_3552786 chr3L_3543582_3543707;chr3L_3515685_3516828 chr3L_3545322_3546131 chr3L_3552787_3552864 5.41 3.03 6.45 6.56 3.70 3.57 8.93 5.56 4.44 6.25 7.69 5.00 9.09 2.94 2.70 5.17 7.14 3.57 8.33 3.57 3.57 6.25 5.45 4.44 7.14 8.00 7.69 7.41 2.38 5.00 5.88 8.00 3.57 5.26 5.56 5.56 2.38 2.70 2.38 6.67 11.11 4.35 6.90 4.55 6.67 5.88 3.85 8.06 2.94 4.55 6.38 6.67 3.33 5.56 5.41 4.76 4.17 3.57 K alternative_first_exon cp309 chr3L - chr3L_15063734_15065628 chr3L_15063734_15065079 chr3L_15065629_15066294 chr3L_15065080_15065251 chr3L_15063032_15063733 5.48 8.89 6.52 7.32 4.65 7.32 7.69 6.17 5.71 2.50 8.82 9.20 10.00 6.67 6.00 13.89 10.26 7.55 6.38 4.31 5.26 3.85 5.48 4.00 2.86 4.08 3.92 5.56 0.00 4.65 3.85 0.00 2.13 6.10 8.70 2.27 4.48 0.00 1.61 2.70 0.00 6.00 12.20 3.85 3.45 6.38 6.25 2.50 5.62 3.85 7.46 6.25 0.00 4.35 5.45 6.45 5.56 3.03 K alternative_first_exon svr chrX + chrX_391423_398700 chrX_396970_398700 chrX_390504_391422 chrX_396869_396969 chrX_398701_398818 92.31 93.75 91.67 70.59 92.86 92.86 90.48 96.15 96.67 92.31 92.86 96.15 90.91 93.75 90.91 94.74 94.74 88.24 92.31 97.22 90.91 72.73 92.59 92.86 88.89 81.82 92.31 85.71 100.00 92.31 85.00 88.89 82.35 95.45 93.75 80.00 88.24 91.67 92.86 95.45 92.31 92.59 93.75 94.12 85.71 93.75 83.33 95.24 96.97 88.89 88.24 90.91 92.31 87.50 94.12 88.89 90.00 95.65 K alternative_first_exon Idh chr3L - chr3L_8351006_8351115;chr3L_8351006_8353892 chr3L_8351006_8351949,chr3L_8351006_8351655 chr3L_8351116_8351225;chr3L_8353893_8354031 chr3L_8351950_8352117 chr3L_8349503_8351005 40.68 51.11 47.06 60.61 44.44 65.52 35.71 50.00 48.89 31.43 55.56 59.30 55.17 39.47 53.49 40.68 42.86 65.22 53.33 67.53 61.90 33.33 33.33 35.62 52.08 70.97 33.33 27.42 35.00 36.36 40.62 38.46 40.62 56.25 37.21 47.92 32.50 65.62 50.98 27.16 33.33 50.00 56.25 16.67 37.84 29.63 30.43 40.43 47.95 29.41 36.49 24.19 37.78 44.68 60.00 34.78 36.26 40.74 K alternative_first_exon CG1910 chr3R + chr3R_27573809_27574675 chr3R_27574408_27574675 chr3R_27573367_27573808 chr3R_27574307_27574407 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon CG5535 chr3L - chr3L_17847808_17849745 chr3L_17847808_17848532 chr3L_17849746_17849864 chr3L_17848533_17848788 chr3L_17847440_17847807 1.27 1.03 0.80 1.01 1.09 0.96 2.70 1.63 1.12 1.52 3.37 1.75 3.77 1.87 0.72 1.42 1.77 2.63 1.46 0.92 3.53 1.15 1.75 2.27 1.35 0.74 3.39 2.06 0.74 1.40 1.22 1.49 0.43 1.18 1.12 4.08 0.82 1.25 2.11 0.92 0.72 1.18 1.98 0.65 0.71 0.60 1.52 0.64 1.29 1.56 2.34 2.13 1.27 1.45 0.62 1.22 1.18 0.49 K alternative_first_exon CG6904 chr3R - chr3R_10970962_10971422,chr3R_10970962_10972151,chr3R_10970962_10972522,chr3R_10970962_10972786;chr3R_10970962_10973196;chr3R_10970962_10971039 chr3R_10970962_10972422 chr3R_10973197_10973329;chr3R_10971040_10971294 chr3R_10972423_10973121 chr3R_10969988_10970961 9.09 7.41 6.25 10.29 5.26 4.88 9.09 7.58 7.87 9.52 11.11 7.84 5.26 7.69 6.12 6.67 6.00 7.14 6.98 13.04 9.09 13.79 15.62 13.64 20.00 6.00 26.09 17.86 16.67 15.00 8.70 5.56 13.89 7.81 15.79 12.50 8.70 18.75 10.53 8.77 13.04 7.23 5.71 7.69 3.12 8.70 16.67 9.09 4.40 11.54 12.00 11.11 4.55 18.18 6.38 14.29 17.65 9.52 K alternative_first_exon CG6145 chr2R - chr2R_9430069_9434019 chr2R_9430069_9432812 chr2R_9434020_9434493 chr2R_9432813_9432947 chr2R_9429666_9430068 38.75 NA NA NA NA NA 42.86 NA 37.50 NA NA 40.00 NA 25.00 NA NA NA NA NA 57.14 NA 25.00 NA NA 25.00 NA NA NA NA 25.00 20.00 NA NA NA 50.00 NA NA NA NA 40.00 NA 40.00 NA NA NA NA NA 20.00 66.67 NA NA NA NA NA NA NA NA NA K alternative_first_exon CG7995 chr3L + chr3L_1739278_1743207,chr3L_1739351_1743207;chr3L_1738745_1743207 chr3L_1742011_1743207 chr3L_1738557_1738744 chr3L_1741840_1742010 chr3L_1743208_1743834 11.80 NA 14.29 8.33 NA 12.50 11.11 18.18 17.65 11.11 NA 7.14 42.86 NA 18.18 8.33 NA 0.00 NA 18.18 33.33 0.00 9.09 22.22 0.00 NA 10.00 15.38 12.50 11.11 12.50 NA NA 10.00 10.00 9.09 0.00 11.11 9.09 13.33 NA 15.79 12.50 12.50 NA 0.00 NA 27.27 13.33 14.29 0.00 12.50 9.09 14.29 NA 14.29 9.09 0.00 K alternative_first_exon aPKC chr2R - chr2R_10836930_10848890;chr2R_10836930_10838191 chr2R_10836930_10837063 chr2R_10848891_10849011;chr2R_10838192_10838414 chr2R_10837064_10837251 chr2R_10836879_10836929 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon betaTub56D chr2R - chr2R_15336252_15338966,chr2R_15336252_15338937 chr2R_15336252_15336831 chr2R_15338967_15339122 chr2R_15336832_15337076 chr2R_15334824_15336251 0.42 0.51 0.17 0.08 0.11 0.20 0.18 0.11 0.20 0.33 0.10 0.28 0.27 0.32 0.07 0.22 0.21 0.10 0.30 0.28 0.09 0.26 0.78 0.65 0.81 0.18 1.23 8.10 1.51 0.64 0.18 0.43 0.44 0.29 0.80 0.67 0.73 0.75 0.63 0.44 0.71 0.17 0.11 0.53 0.42 0.80 0.34 0.42 0.36 1.15 0.87 0.64 0.72 0.58 0.17 0.53 0.52 0.66 K alternative_first_exon CG1969 chr3R + chr3R_25566130_25566289;chr3R_25565702_25566289 chr3R_25566142_25566289 chr3R_25565567_25565701 chr3R_25566076_25566141 chr3R_25566290_25566500 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon plexA chr4 - chr4_1044307_1047395;chr4_1044307_1047588,chr4_1044307_1047399 chr4_1044307_1046841 chr4_1047589_1047654 chr4_1046842_1047161 chr4_1042868_1044306 12.77 NA NA 17.24 NA NA 8.82 17.39 17.07 NA NA 12.50 12.50 14.29 NA 11.90 NA NA 6.25 13.04 NA 8.33 6.25 NA NA NA NA NA NA NA NA NA NA 14.29 NA 9.09 NA NA NA 30.00 NA 14.29 NA 16.67 NA NA NA NA 11.11 NA 7.14 15.38 NA NA NA NA NA NA K alternative_first_exon tkv chr2L - chr2L_5221651_5241368 chr2L_5221651_5236335 chr2L_5241369_5241506 chr2L_5236336_5237358 chr2L_5221463_5221650 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.38 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon Trp1 chr2L + chr2L_10010151_10010736,chr2L_10009984_10010736,chr2L_10009827_10010736;chr2L_10009537_10010736 chr2L_10010558_10010736 chr2L_10009386_10009536 chr2L_10010360_10010557 chr2L_10010737_10011552 5.71 6.80 7.27 4.44 5.00 6.98 5.30 7.75 8.08 8.64 4.04 5.71 5.83 9.09 7.35 7.01 5.56 5.05 7.81 5.26 4.50 6.35 3.17 6.19 3.70 4.17 6.82 10.00 5.69 4.76 11.22 8.86 3.55 10.34 6.67 3.61 4.10 3.09 3.92 4.35 5.26 6.73 7.14 7.25 4.81 5.04 6.48 5.11 9.68 13.45 5.94 5.81 2.86 2.82 5.16 2.94 5.07 7.58 K alternative_first_exon CG30015 chr2R - chr2R_6731017_6735957 chr2R_6731017_6731351 chr2R_6735958_6736045 chr2R_6731352_6731528 chr2R_6730579_6731016 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 1.18 0.00 1.32 0.00 0.00 0.00 0.00 1.45 5.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon trio chr3L - chr3L_1003822_1003911;chr3L_1003822_1009321 chr3L_1003822_1007216 chr3L_1009322_1009379 chr3L_1007217_1007775 chr3L_1003728_1003821 92.83 90.00 93.51 94.67 92.72 92.09 94.09 95.93 93.58 91.80 95.49 92.65 89.72 93.49 92.57 92.69 93.75 93.87 95.32 90.58 93.98 90.51 85.90 86.76 88.89 95.97 89.02 91.23 93.92 93.94 95.00 94.64 96.97 93.16 91.11 89.81 88.09 87.17 88.45 90.86 95.36 93.19 92.96 92.46 92.54 92.83 88.14 95.99 94.22 92.20 87.31 93.71 93.10 81.06 93.86 88.54 93.85 97.40 K alternative_first_exon CG11537 chr3L - chr3L_3133339_3133648;chr3L_3133339_3133948;chr3L_3133339_3139750 chr3L_3133339_3142827 chr3L_3133949_3134180;chr3L_3139751_3139956 chr3L_3142828_3143454 chr3L_3132633_3133338 71.43 NA 50.00 71.43 NA NA 50.00 NA 55.56 83.33 NA 40.00 NA 60.00 66.67 NA 75.00 NA 60.00 NA 100.00 71.43 77.78 85.71 60.00 71.43 NA 100.00 80.00 75.00 71.43 NA 85.71 40.00 83.33 50.00 NA NA NA NA 83.33 80.00 NA 80.00 83.33 50.00 66.67 50.00 33.33 NA 75.00 NA NA NA 50.00 100.00 NA 75.00 N alternative_first_exon Ant2 chrX - chrX_10673729_10680838 chrX_10673729_10674025 chrX_10680839_10680978 chrX_10674026_10674153 chrX_10672923_10673728 88.29 78.95 100.00 NA 100.00 100.00 100.00 75.76 83.05 100.00 100.00 86.84 100.00 100.00 73.33 100.00 100.00 78.46 100.00 78.95 100.00 81.94 100.00 84.44 100.00 76.60 74.36 84.78 79.49 72.41 78.26 100.00 100.00 100.00 100.00 78.26 100.00 76.74 86.27 86.27 100.00 81.13 100.00 80.43 100.00 86.84 83.87 100.00 100.00 71.88 89.74 81.82 100.00 79.31 75.00 83.87 91.43 100.00 K alternative_first_exon tacc chr3R - chr3R_563503_563786;chr3R_563503_565232;chr3R_563503_565293 chr3R_563503_567573 chr3R_565233_565269;chr3R_565294_565365 chr3R_567574_569904 chr3R_563195_563502 81.25 82.69 76.27 79.83 75.61 78.12 68.09 78.02 68.63 78.79 67.86 76.92 81.25 80.77 80.30 83.17 76.47 82.22 86.44 85.44 76.19 73.53 94.44 87.72 90.32 78.79 91.67 80.65 84.00 84.62 76.25 84.00 87.50 78.22 90.32 84.62 78.26 86.84 88.24 88.41 90.00 76.80 82.22 87.18 73.91 92.68 80.00 90.00 71.79 85.71 90.24 75.93 64.29 89.47 71.26 88.89 76.00 85.00 K alternative_first_exon CG1648 chr2R - chr2R_5700170_5707344 chr2R_5700170_5700228 chr2R_5707345_5707556 chr2R_5700229_5700279 chr2R_5699987_5700169 5.00 0.00 10.00 0.00 12.50 10.00 5.00 5.88 9.52 NA 12.50 7.14 0.00 7.69 11.11 7.69 0.00 7.14 0.00 3.57 0.00 3.85 NA 0.00 NA 0.00 0.00 10.00 NA NA 0.00 NA NA 5.56 0.00 0.00 NA NA NA NA 14.29 0.00 9.09 NA NA 0.00 4.35 NA 0.00 10.00 8.33 NA 9.09 NA 0.00 16.67 5.00 0.00 K alternative_first_exon GstS1 chr2R - chr2R_12982566_12986996;chr2R_12982566_12984732 chr2R_12982566_12984308 chr2R_12984733_12984935 chr2R_12984309_12984482 chr2R_12982270_12982565 0.00 0.00 11.11 5.26 0.00 0.00 0.00 8.33 6.67 0.00 0.00 7.14 0.00 0.00 0.00 0.00 12.50 9.09 0.00 4.76 0.00 3.45 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 4.35 0.00 0.00 0.00 0.00 4.17 0.00 7.69 0.00 NA NA 0.00 0.00 0.00 0.00 K alternative_first_exon for chr2L - chr2L_3640518_3655269 chr2L_3640518_3645855 chr2L_3655270_3655585 chr2L_3645856_3646136 chr2L_3638939_3640517 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K alternative_first_exon tacc chr3R - chr3R_563461_565232;chr3R_563461_567573 chr3R_563461_565293 chr3R_565233_565269;chr3R_567574_569904 chr3R_565294_565365 chr3R_563195_563460 16.67 19.05 18.52 17.65 20.83 16.67 20.29 7.55 28.36 28.57 6.45 9.80 14.29 9.52 8.33 16.13 12.50 19.05 25.00 17.54 22.73 22.22 13.89 28.00 17.65 26.67 17.39 16.67 27.78 21.43 30.00 15.38 3.33 10.20 6.25 11.11 10.34 22.22 17.65 9.09 7.69 18.75 8.00 4.35 0.00 18.18 18.18 5.26 13.33 18.75 5.71 18.75 17.65 14.29 15.79 8.33 32.00 11.54 K alternative_first_exon Mhcl chr3R - chr3R_11916813_11921526 chr3R_11916813_11918566 chr3R_11921527_11921670 chr3R_11918567_11919872 chr3R_11916390_11916812 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 NA 4.35 3.70 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 NA 0.00 NA 0.00 0.00 0.00 NA 5.56 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 K alternative_first_exon CG42399 chr2L - chr2L_149227_155127 chr2L_149227_151114 chr2L_155128_155321 chr2L_151115_153288 chr2L_148879_149226 100.00 66.67 50.00 66.67 66.67 100.00 100.00 75.00 83.33 100.00 100.00 100.00 100.00 100.00 75.00 80.00 100.00 100.00 100.00 80.00 50.00 100.00 75.00 100.00 100.00 100.00 100.00 66.67 100.00 66.67 75.00 50.00 75.00 75.00 100.00 100.00 100.00 66.67 100.00 66.67 100.00 80.00 100.00 100.00 100.00 100.00 66.67 100.00 80.00 100.00 100.00 100.00 66.67 NA 100.00 50.00 100.00 100.00 K alternative_first_exon CG6950 chr3R - chr3R_7647542_7647697;chr3R_7647542_7648144;chr3R_7647542_7647913 chr3R_7647542_7647628 chr3R_7648145_7648210;chr3R_7647914_7647955 chr3R_7647629_7647839 chr3R_7647002_7647541 32.66 42.86 12.50 31.25 11.11 35.71 46.67 42.11 37.04 NA 22.22 33.33 30.00 30.00 25.00 33.33 NA 25.00 20.00 32.00 27.27 NA 75.00 NA NA NA NA NA NA NA 30.77 NA 18.18 33.33 NA NA 62.50 NA NA 31.25 NA 34.78 NA 57.14 NA 33.33 NA 33.33 35.00 NA NA NA NA NA 26.67 NA 35.71 20.00 K alternative_first_exon Tm1 chr3R + chr3R_11117248_11120834;chr3R_11115162_11120834 chr3R_11111077_11120834 chr3R_11116668_11117247;chr3R_11112721_11115161 chr3R_11110951_11111076 chr3R_11120835_11120968 0.00 0.00 0.37 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.53 0.36 0.00 0.00 0.00 0.43 0.00 0.53 0.61 0.00 0.00 0.00 0.46 0.40 K alternative_first_exon tacc chr3R - chr3R_563485_567573 chr3R_563485_565232 chr3R_567574_569904 chr3R_565233_565269 chr3R_563195_563484 0.00 0.00 0.00 0.00 0.00 8.33 11.11 7.14 8.33 0.00 0.00 0.00 20.00 12.50 0.00 12.50 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 12.50 0.00 0.00 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50.00 0.00 K alternative_first_exon Ect4 chr3L + chr3L_8067926_8086158 chr3L_8072742_8086158 chr3L_8067406_8067925 chr3L_8072470_8072741 chr3L_8086159_8086437 93.58 100.00 83.33 90.91 NA NA 90.91 90.91 84.62 88.89 80.00 90.00 NA NA 85.71 85.71 80.00 NA 83.33 100.00 NA 94.29 92.31 100.00 100.00 100.00 92.86 96.43 90.91 91.67 100.00 NA 100.00 100.00 90.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 92.86 NA 100.00 NA 90.00 85.71 100.00 90.00 100.00 NA NA 100.00 NA NA 100.00 K alternative_first_exon CG2017 chr3R - chr3R_1686127_1687510,chr3R_1686127_1688016;chr3R_1686127_1687468;chr3R_1686127_1688092,chr3R_1686127_1687891 chr3R_1686127_1686928,chr3R_1686127_1686711 chr3R_1687469_1687624;chr3R_1688093_1688116 chr3R_1686929_1687019 chr3R_1685454_1686126 0.00 0.00 1.85 1.85 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 1.09 1.61 0.00 0.98 4.50 0.96 0.00 0.00 0.00 0.00 1.39 1.49 1.27 0.78 1.14 0.00 0.99 0.00 0.00 0.00 0.00 0.00 1.04 1.49 0.00 0.00 5.26 3.33 0.00 0.00 1.49 0.00 1.20 0.00 0.00 K alternative_first_exon CG6231 chr3R - chr3R_15445103_15446336;chr3R_15445103_15453165 chr3R_15445103_15458055 chr3R_15446337_15446860;chr3R_15453166_15453476 chr3R_15458056_15458440 chr3R_15444807_15445102 0.00 0.00 16.67 0.00 25.00 0.00 0.00 0.00 7.69 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 NA 16.67 12.50 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 25.00 0.00 0.00 0.00 0.00 NA 0.00 20.00 0.00 NA 0.00 0.00 14.29 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 16.67 25.00 0.00 0.00 K alternative_first_exon CG7816 chr3R - chr3R_25691122_25692883;chr3R_25691122_25692901;chr3R_25691122_25694365,chr3R_25691122_25694254;chr3R_25691122_25691822;chr3R_25691122_25693711 chr3R_25691122_25693465 chr3R_25692902_25692936;chr3R_25694366_25694618;chr3R_25691823_25691898;chr3R_25693712_25693793 chr3R_25693466_25693539 chr3R_25690779_25691121 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_first_exon desat1 chr3R + chr3R_8269076_8270520,chr3R_8267942_8270520,chr3R_8269415_8270520;chr3R_8265434_8270520;chr3R_8267331_8270520;chr3R_8269860_8270520 chr3R_8269445_8270520 chr3R_8265322_8265433;chr3R_8267149_8267330;chr3R_8269763_8269859 chr3R_8269304_8269444 chr3R_8270521_8270840 1.82 1.67 2.45 2.10 2.04 1.92 1.82 1.61 1.59 2.53 3.99 2.79 1.81 1.22 1.70 1.73 1.73 1.98 1.76 2.19 2.85 3.23 1.77 1.60 2.34 1.05 2.58 1.60 4.45 2.43 1.20 3.33 3.28 1.75 1.57 2.61 0.75 1.05 1.87 2.37 3.14 1.45 1.13 1.47 2.23 2.03 1.34 2.13 1.67 2.39 2.52 0.70 1.27 0.87 1.60 1.07 2.01 2.36 K alternative_first_exon l(1)G0196 chrX + chrX_21889626_21895316 chrX_21894258_21895316 chrX_21889016_21889625 chrX_21893432_21894257 chrX_21895317_21895749 80.39 80.60 83.78 80.83 85.22 83.33 82.09 81.96 83.99 78.87 82.41 79.01 79.31 79.45 83.95 77.03 81.08 80.83 78.77 82.81 83.87 85.96 84.02 81.16 80.20 82.14 81.95 85.00 78.79 77.88 85.47 62.67 78.05 79.08 80.99 79.21 85.62 84.82 85.99 75.68 62.37 83.39 79.03 84.21 69.23 67.41 70.33 73.48 80.43 68.93 80.39 79.41 61.90 69.44 79.75 71.76 62.96 41.27 K alternative_first_exon dnc chrX + chrX_3208642_3215073;chrX_3189487_3215073;chrX_3175189_3215073 chrX_3140719_3215073 chrX_3189314_3189486;chrX_3173980_3175188 chrX_3140328_3140718 chrX_3215074_3215250 3.23 3.12 2.38 13.24 0.00 2.86 2.00 2.08 1.15 0.00 0.00 1.75 0.00 3.12 2.27 2.78 3.03 3.12 3.23 0.00 0.00 10.00 3.33 5.00 13.33 3.45 10.00 16.67 6.67 0.00 2.27 0.00 3.57 1.67 0.00 4.55 3.23 5.00 7.41 4.00 0.00 1.23 3.03 6.25 5.26 6.25 5.26 4.55 1.22 5.88 3.45 8.33 6.25 5.26 2.44 5.88 4.55 5.88 K alternative_first_exon CG7023,CG7029 chr3R + chr3R_18577089_18592332 chr3R_18580991_18592332 chr3R_18576614_18577088 chr3R_18580783_18580990 chr3R_18592333_18592448 31.91 29.41 30.88 27.69 36.17 29.09 45.37 33.91 40.80 47.62 36.73 28.07 36.49 35.00 26.98 33.04 36.76 27.66 38.37 31.67 31.11 43.75 30.77 35.19 31.71 28.30 26.00 37.04 28.21 33.33 31.94 28.57 35.00 34.00 22.45 31.91 36.59 34.21 26.47 28.38 30.43 33.83 36.07 41.18 14.29 30.30 30.77 27.59 36.43 30.77 31.88 40.00 27.27 35.00 30.67 40.00 36.36 29.41 K alternative_first_exon hipk chr3L + chr3L_543278_547481 chr3L_546199_547481 chr3L_543070_543277 chr3L_546071_546198 chr3L_547482_548067 20.61 28.57 15.56 18.38 25.00 16.05 17.58 19.78 14.63 13.21 18.18 20.89 24.19 21.14 19.15 20.61 13.33 20.29 18.90 30.87 17.54 37.93 50.00 46.88 38.46 12.33 43.59 21.43 9.84 18.60 13.33 9.09 13.85 20.43 33.33 19.61 57.69 43.75 56.00 26.67 25.00 18.06 14.74 35.82 17.65 23.68 37.50 12.18 19.43 23.08 42.37 28.95 31.58 55.56 15.89 28.57 46.15 4.26 K alternative_first_exon chic chr2L - chr2L_5979705_5979818,chr2L_5979705_5979951,chr2L_5979705_5979953,chr2L_5979705_5979959,chr2L_5979705_5980025,chr2L_5979705_5980558,chr2L_5979705_5980632,chr2L_5979705_5980639,chr2L_5979705_5980734,chr2L_5979705_5980846;chr2L_5979705_5980208;chr2L_5979705_5979939 chr2L_5979705_5980952,chr2L_5979705_5980950 chr2L_5980209_5980481;chr2L_5979940_5980098 chr2L_5980953_5981025 chr2L_5979412_5979704 11.24 9.63 13.58 12.65 12.18 12.71 9.21 14.66 12.19 11.59 10.59 9.30 11.31 8.71 10.73 7.83 10.71 9.02 12.11 11.24 8.18 16.14 4.54 6.37 5.92 10.22 4.97 11.16 15.17 21.55 9.04 16.70 33.82 14.16 10.94 13.69 4.96 6.25 6.90 14.64 15.42 14.66 11.48 12.36 20.08 13.34 5.73 21.14 13.50 6.02 4.34 5.63 11.53 3.77 12.12 4.53 6.22 29.10 K alternative_first_exon Trn chr3L + chr3L_6186644_6187144;chr3L_6186723_6187144 chr3L_6186948_6187144 chr3L_6186584_6186722 chr3L_6186846_6186947 chr3L_6187145_6187250 0.00 0.00 0.00 1.72 6.67 3.45 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 2.08 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 2.94 NA 11.11 0.00 0.00 0.00 0.00 0.00 0.00 3.12 NA 0.00 0.00 0.00 NA NA 0.00 5.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA K alternative_first_exon SRPK chr2R + chr2R_11269919_11270907 chr2R_11270805_11270907 chr2R_11269355_11269918 chr2R_11270575_11270804 chr2R_11270908_11271804 0.00 0.00 1.18 0.67 0.00 1.37 0.00 0.00 0.47 0.00 1.72 1.19 0.00 0.00 0.00 1.16 0.00 0.00 1.18 1.10 0.00 1.06 0.75 0.00 0.00 1.20 1.01 0.95 0.90 0.00 1.12 0.00 0.00 0.72 1.27 0.00 0.00 0.00 0.93 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.82 1.49 0.00 0.00 0.91 0.00 0.00 0.00 K alternative_first_exon CG3530 chr2R - chr2R_19281004_19283951 chr2R_19281004_19282439 chr2R_19283952_19284202 chr2R_19282440_19282926 chr2R_19280887_19281003 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 2.78 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.00 2.22 11.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 K alternative_first_exon CG7139 chr3L - chr3L_22063263_22063867 chr3L_22063263_22063385 chr3L_22063868_22064655 chr3L_22063386_22063538 chr3L_22062476_22063262 3.57 2.70 2.70 2.27 3.45 0.00 4.65 4.55 4.62 3.23 4.35 3.57 20.00 3.33 2.56 5.56 3.45 3.45 3.45 4.23 4.17 3.92 3.70 0.00 9.68 3.70 4.35 2.50 5.26 4.88 2.63 4.00 8.93 6.00 3.57 3.23 1.43 2.70 2.00 3.03 4.35 3.33 0.00 6.00 6.90 9.38 3.45 7.69 1.72 4.17 4.00 0.00 3.85 4.55 2.94 3.45 4.17 2.78 K alternative_first_exon Arf79F chr3L - chr3L_22863166_22865156,chr3L_22863166_22865023;chr3L_22863166_22864559 chr3L_22863166_22863946 chr3L_22865157_22865157;chr3L_22864560_22864855 chr3L_22863947_22864153 chr3L_22862942_22863165 17.43 NA NA 11.11 NA NA NA 15.38 10.00 NA NA NA NA NA 40.00 15.38 NA NA NA 14.29 NA NA 18.18 11.11 NA NA 30.00 NA NA 12.50 21.43 NA NA 20.00 NA NA NA NA NA 16.67 NA 16.67 NA NA NA 18.18 NA NA 25.00 NA NA 40.00 NA NA 44.44 NA 22.22 16.67 K alternative_first_exon CG6783,sea chr3R - chr3R_7386928_7387922;chr3R_7386928_7388947 chr3R_7386928_7390161 chr3R_7387923_7388017;chr3R_7388948_7389004 chr3R_7390162_7390433 chr3R_7386574_7386927 0.00 0.00 0.00 8.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.71 0.00 0.00 0.00 0.00 0.00 3.45 2.94 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 9.09 1.61 2.78 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 3.57 3.12 0.00 0.00 0.00 0.00 0.00 3.12 0.00 K alternative_first_exon toc chr2L - chr2L_3108862_3124014 chr2L_3108862_3112092 chr2L_3124015_3124957 chr2L_3112093_3112336 chr2L_3108725_3108861 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon CG1399 chr2R - chr2R_3568976_3570030 chr2R_3568976_3569045 chr2R_3570031_3571018 chr2R_3569046_3569339 chr2R_3568813_3568975 13.64 10.96 9.86 13.00 8.62 12.12 14.43 11.88 10.83 18.07 10.71 13.11 15.22 13.64 12.50 10.26 10.77 6.90 13.89 13.77 7.41 20.78 11.11 10.81 16.25 18.18 13.51 20.00 28.28 17.98 10.20 25.00 20.62 7.77 11.11 16.09 13.43 10.47 14.52 13.95 16.67 11.92 11.86 16.33 20.00 17.33 23.19 19.19 12.40 9.52 18.60 15.07 25.49 15.56 13.64 11.86 24.19 26.47 K alternative_first_exon CycG chr3R - chr3R_27427953_27428792,chr3R_27427953_27429034;chr3R_27427953_27436602 chr3R_27427953_27435041 chr3R_27436603_27436706 chr3R_27435042_27435583 chr3R_27427138_27427952 54.86 56.22 47.09 59.12 39.77 49.45 52.07 60.97 50.76 32.83 34.09 60.34 61.92 57.95 49.07 61.86 59.02 48.02 61.64 47.70 41.43 57.03 54.86 58.73 66.67 55.63 58.80 30.63 44.84 51.17 58.81 43.52 45.77 63.04 64.89 69.12 26.33 57.89 38.20 60.19 60.55 52.78 60.90 45.87 37.23 63.25 56.67 54.76 55.82 49.69 70.39 56.08 39.56 65.00 54.42 47.24 36.52 33.92 K alternative_first_exon Dys chr3R + chr3R_15290569_15302844 chr3R_15302758_15302844 chr3R_15290222_15290568 chr3R_15302591_15302757 chr3R_15302845_15302999 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA K alternative_first_exon CG7220 chr2R + chr2R_6619302_6624161 chr2R_6623561_6624161 chr2R_6619084_6619301 chr2R_6623178_6623560 chr2R_6624162_6624253 7.27 7.32 12.00 5.63 10.26 8.93 11.43 6.85 12.12 5.00 5.41 7.79 9.09 9.09 8.33 10.14 12.50 6.67 9.09 5.69 8.57 12.31 10.45 12.50 6.45 15.38 7.14 11.76 3.85 3.66 13.56 4.84 1.96 10.00 7.27 6.90 4.26 10.53 6.00 4.24 2.47 9.00 14.29 7.35 2.67 6.12 8.00 1.46 8.99 11.11 7.02 5.71 5.88 4.55 6.78 6.82 6.90 2.47 N alternative_first_exon desat1 chr3R + chr3R_8269076_8270520,chr3R_8267942_8270520,chr3R_8269415_8270520;chr3R_8265434_8270520;chr3R_8269860_8270520;chr3R_8269445_8270520 chr3R_8267331_8270520 chr3R_8265322_8265433;chr3R_8269763_8269859;chr3R_8269304_8269444 chr3R_8267149_8267330 chr3R_8270521_8270840 51.00 51.00 48.77 43.79 44.90 50.80 48.52 50.91 46.89 42.42 46.74 48.83 42.75 48.02 49.88 55.85 45.67 52.97 49.56 51.44 59.18 50.12 53.64 53.72 50.47 46.60 56.13 48.93 51.82 56.28 53.12 46.11 56.15 52.72 57.09 55.22 49.75 58.74 59.18 54.44 50.31 48.55 51.88 56.13 50.45 55.25 64.88 45.21 53.89 60.16 53.50 51.22 57.81 62.17 43.38 53.57 44.98 41.34 K alternative_first_exon Aldh-III chr2R - chr2R_3361349_3362130,chr2R_3361349_3362076;chr2R_3361349_3362846 chr2R_3361349_3361420 chr2R_3362131_3362162;chr2R_3362847_3362882 chr2R_3361421_3361592 chr2R_3361227_3361348 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 92.86 NA NA 96.97 83.33 93.33 100.00 95.24 100.00 77.78 94.12 97.62 90.91 NA 95.83 100.00 100.00 85.71 100.00 NA NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 92.31 100.00 100.00 100.00 NA 96.30 93.33 100.00 100.00 95.65 100.00 100.00 96.55 100.00 95.24 100.00 91.67 100.00 90.48 92.86 93.75 100.00 K alternative_first_exon CG13585 chr2R + chr2R_20419624_20419962;chr2R_20419160_20419962,chr2R_20419258_20419962 chr2R_20419902_20419962 chr2R_20419138_20419159 chr2R_20419635_20419901 chr2R_20419963_20420064 29.52 28.57 25.00 17.24 39.13 36.36 40.00 26.67 31.58 36.84 36.67 32.79 23.33 36.00 27.27 29.41 22.73 48.48 16.67 35.14 39.29 53.12 19.23 33.33 33.33 24.00 23.08 NA 30.77 22.73 15.00 29.17 47.06 36.84 35.29 20.00 25.58 25.00 22.22 27.27 30.77 23.81 28.00 20.00 32.00 24.49 32.26 26.32 25.76 29.63 40.91 33.33 40.00 38.46 21.21 20.59 33.72 31.11 K alternative_first_exon NTPase chr2L - chr2L_2882834_2884356,chr2L_2882834_2884796;chr2L_2882834_2884992;chr2L_2882834_2882919 chr2L_2882834_2885632 chr2L_2884993_2885208;chr2L_2882920_2883113 chr2L_2885633_2885850 chr2L_2882692_2882833 0.49 0.00 0.64 0.54 0.90 0.76 1.65 1.08 0.77 0.75 0.84 0.85 1.04 0.00 0.68 1.25 0.00 0.96 0.00 0.39 0.00 0.42 0.37 0.00 1.24 0.74 0.00 0.49 0.00 0.65 0.00 0.83 0.00 0.51 0.73 0.64 0.00 0.66 0.00 0.42 0.00 0.32 0.99 0.39 0.00 0.47 0.00 0.00 0.43 0.62 0.53 0.82 0.00 0.00 0.68 0.00 0.00 0.68 K alternative_first_exon Ank2 chr3L - chr3L_7704070_7710466 chr3L_7704070_7706237 chr3L_7710467_7711439 chr3L_7706238_7706750 chr3L_7703968_7704069 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon ago chr3L - chr3L_4251841_4253988;chr3L_4251841_4251981 chr3L_4251841_4254127 chr3L_4253989_4254052;chr3L_4251982_4252119 chr3L_4254128_4254309 chr3L_4248724_4251840 100.00 100.00 100.00 98.11 100.00 100.00 98.18 96.83 98.82 100.00 100.00 96.77 100.00 100.00 100.00 98.51 100.00 100.00 100.00 98.31 100.00 96.88 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 93.75 100.00 100.00 96.67 100.00 95.83 100.00 100.00 100.00 98.48 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 95.65 100.00 100.00 95.83 100.00 100.00 100.00 K alternative_first_exon PP2A-B' chr3R + chr3R_13994669_13995205;chr3R_13993929_13995205;chr3R_13993590_13995205 chr3R_13994844_13995205 chr3R_13993859_13993928;chr3R_13993451_13993589 chr3R_13994500_13994843 chr3R_13995206_13995820 23.61 25.00 26.67 12.50 25.00 14.29 26.47 21.05 14.29 NA 16.67 18.18 15.00 15.38 20.00 14.58 28.57 28.57 16.67 14.63 22.22 30.77 36.36 18.18 36.36 15.79 72.73 42.86 44.44 50.00 11.76 NA 30.77 15.15 22.22 42.86 NA 33.33 33.33 20.00 11.11 17.95 11.76 30.77 NA 33.33 33.33 14.29 20.00 25.00 18.18 27.27 28.57 NA 18.18 33.33 28.57 25.00 K alternative_first_exon CG10512 chr3L + chr3L_21196423_21200535 chr3L_21199727_21200535 chr3L_21196020_21196422 chr3L_21198697_21199726 chr3L_21200536_21201194 98.04 98.57 100.00 98.89 97.87 98.00 95.45 98.80 98.20 96.00 97.83 98.17 100.00 100.00 98.31 98.48 98.04 98.36 98.08 98.08 98.31 96.97 95.83 98.88 97.87 98.36 98.57 93.10 97.67 96.08 97.37 100.00 97.83 98.75 98.08 98.46 98.41 97.56 98.25 96.00 97.37 99.13 97.30 95.12 98.18 96.08 97.56 97.78 98.13 95.45 97.26 95.83 96.36 98.18 100.00 96.97 97.96 97.62 K alternative_first_exon Plc21C chr2L + chr2L_306390_317742 chr2L_310606_317742 chr2L_305941_306389 chr2L_310200_310605 chr2L_317743_318120 25.00 25.00 37.50 37.50 40.00 28.57 25.00 27.27 26.32 25.00 33.33 30.00 28.57 16.67 33.33 20.00 14.29 20.00 30.00 27.27 40.00 50.00 22.22 14.29 25.00 20.00 28.57 40.00 16.67 42.86 25.00 NA 33.33 21.43 40.00 16.67 20.00 20.00 25.00 23.08 NA 25.00 42.86 14.29 NA 20.00 NA 18.18 21.43 NA 22.22 16.67 NA NA 22.22 25.00 NA 20.00 K alternative_first_exon CG7816 chr3R - chr3R_25691122_25692883;chr3R_25691122_25693465;chr3R_25691122_25692901;chr3R_25691122_25691822;chr3R_25691122_25693711 chr3R_25691122_25694365,chr3R_25691122_25694254 chr3R_25693466_25693539;chr3R_25692902_25692936;chr3R_25691823_25691898;chr3R_25693712_25693793 chr3R_25694366_25694618 chr3R_25690779_25691121 43.08 32.49 37.62 53.14 32.96 42.58 51.46 42.37 30.10 30.94 40.35 41.76 51.97 40.66 47.85 37.81 36.25 32.31 41.87 39.39 35.16 73.61 39.38 41.31 52.35 59.03 45.37 74.77 72.22 59.81 43.08 47.93 65.98 50.00 45.51 78.41 36.92 42.52 41.87 52.08 69.57 46.91 42.45 42.44 66.36 47.27 64.33 63.43 43.17 48.84 41.57 41.50 35.26 41.98 44.02 42.24 43.84 57.33 K alternative_first_exon CG42708 chr2R - chr2R_8561434_8563629 chr2R_8561434_8562495 chr2R_8563630_8563736 chr2R_8562496_8562923 chr2R_8561404_8561433 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA K alternative_first_exon CG6424 chr2R - chr2R_13595551_13603210 chr2R_13595551_13596113 chr2R_13603211_13605254 chr2R_13596114_13596362 chr2R_13593859_13595550 14.29 11.76 15.79 22.22 14.29 12.50 23.91 18.75 15.22 7.14 25.00 17.65 20.00 15.79 11.76 19.35 17.65 13.33 5.26 12.12 15.38 15.79 16.67 10.00 15.79 10.00 13.64 10.87 17.86 15.79 7.41 15.38 16.13 19.44 12.50 16.67 9.52 21.43 13.04 9.09 23.81 13.16 12.50 9.09 14.29 6.25 7.14 12.90 13.33 20.00 13.04 7.69 14.29 12.50 14.29 9.09 14.29 7.14 K alternative_first_exon l(3)82Fd chr3R - chr3R_1124212_1125191 chr3R_1124212_1124283 chr3R_1125192_1125295 chr3R_1124284_1124499 chr3R_1123924_1124211 4.76 0.00 0.00 12.50 0.00 3.70 2.70 3.92 3.61 14.29 6.90 4.62 3.12 4.35 2.44 2.44 4.00 3.57 3.23 5.77 5.71 13.89 6.82 5.41 4.55 0.00 6.45 29.17 21.74 7.69 7.41 18.18 3.70 1.96 3.70 10.71 4.44 0.00 4.76 2.94 8.33 2.74 0.00 12.50 9.09 4.76 23.08 3.57 3.23 11.54 6.06 4.00 8.33 7.14 5.26 5.00 9.52 5.56 K alternative_first_exon mnb chrX - chrX_17767434_17771453 chrX_17767434_17768437 chrX_17771454_17772549 chrX_17768438_17769073 chrX_17767288_17767433 0.00 0.00 0.00 0.00 0.00 4.35 1.85 1.59 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 1.92 0.00 4.00 0.00 3.33 4.00 0.00 3.33 5.00 0.00 0.00 3.12 0.00 3.12 0.00 3.45 0.00 3.70 4.55 4.35 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 2.00 1.43 4.55 2.94 3.45 0.00 0.00 0.00 6.25 0.00 0.00 K alternative_first_exon CG8036 chr3R + chr3R_4496073_4497432;chr3R_4495651_4497432 chr3R_4496628_4497432 chr3R_4495354_4495650 chr3R_4496375_4496627 chr3R_4497433_4499031 0.00 0.31 0.33 0.00 0.00 0.00 0.25 0.00 0.00 0.36 0.00 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.27 0.32 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.19 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon isopeptidase-T-3 chr2R + chr2R_15558655_15558865 chr2R_15558801_15558865 chr2R_15558124_15558654 chr2R_15558668_15558800 chr2R_15558866_15559355 12.50 16.67 0.00 16.67 NA 25.00 25.00 NA 23.08 20.00 0.00 20.00 NA 0.00 14.29 25.00 25.00 20.00 25.00 0.00 14.29 16.67 7.14 16.67 0.00 NA 6.67 14.29 14.29 22.22 0.00 12.50 0.00 25.00 0.00 8.33 11.11 0.00 10.00 9.09 0.00 12.50 0.00 0.00 0.00 9.09 14.29 0.00 37.50 16.67 0.00 12.50 0.00 0.00 0.00 12.50 16.67 25.00 K alternative_first_exon SP2637 chr2R - chr2R_14530268_14545580;chr2R_14530268_14545584 chr2R_14530268_14540028 chr2R_14545585_14545706 chr2R_14540029_14540279 chr2R_14529910_14530267 51.02 46.34 48.65 54.24 50.00 50.00 55.13 63.77 57.80 33.33 50.00 58.33 55.88 68.29 54.76 55.95 58.82 50.00 48.78 52.81 53.85 37.25 50.00 47.06 54.17 48.28 59.38 33.33 37.50 44.44 44.44 45.00 47.22 57.14 50.00 45.83 50.00 51.72 53.12 51.02 38.10 57.81 62.07 60.87 38.10 48.57 55.56 42.86 58.21 51.06 57.14 59.38 62.50 46.15 43.75 55.56 51.52 47.22 K alternative_first_exon MED6 chr3R - chr3R_5593601_5593698;chr3R_5593601_5593886 chr3R_5593601_5594085 chr3R_5593699_5593832;chr3R_5593887_5593976 chr3R_5594086_5594211 chr3R_5593573_5593600 18.75 22.73 14.29 20.00 11.11 10.53 17.86 19.23 15.38 NA 18.75 25.00 10.53 15.79 11.54 13.64 33.33 13.64 19.23 25.71 25.00 51.52 20.00 15.79 5.56 5.88 4.76 37.50 31.25 23.08 26.32 17.65 21.74 10.71 16.67 18.75 35.71 11.11 21.74 14.71 28.57 14.71 21.43 27.78 35.71 18.18 21.05 20.00 18.75 15.00 18.18 23.08 33.33 7.69 14.29 15.79 31.82 35.71 K alternative_first_exon hts chr2R - chr2R_15306111_15312327 chr2R_15306111_15311098 chr2R_15312328_15312454 chr2R_15311099_15311599 chr2R_15306062_15306110 90.74 96.00 85.71 87.88 90.48 89.66 86.36 90.38 88.16 91.67 84.62 94.12 91.67 92.31 86.84 86.44 87.10 84.62 87.80 97.56 87.50 100.00 96.00 95.65 100.00 93.75 94.74 66.67 71.43 100.00 87.50 93.33 90.24 88.57 100.00 95.65 90.48 84.62 94.12 90.74 100.00 93.33 89.66 91.18 85.71 92.31 94.44 95.00 87.10 85.71 93.10 88.89 90.00 91.67 91.30 93.75 100.00 89.29 N alternative_first_exon LanB1 chr2L + chr2L_7814505_7814575;chr2L_7811773_7814575 chr2L_7814401_7814575 chr2L_7811440_7811772 chr2L_7814369_7814400 chr2L_7814576_7814651 18.92 27.10 20.19 22.34 32.80 18.95 26.74 26.88 32.09 15.91 37.81 21.30 28.57 25.36 22.05 25.20 33.73 27.24 26.22 19.91 27.37 13.79 12.08 10.80 16.30 14.78 8.28 17.27 10.00 18.92 16.38 11.94 10.55 22.94 13.11 12.84 27.34 11.54 7.06 17.92 11.29 27.86 28.31 12.74 18.18 15.89 19.78 13.75 23.55 14.29 17.07 21.31 15.45 11.11 21.49 17.91 25.93 17.39 K alternative_first_exon CG16758 chr3L - chr3L_2500463_2503142 chr3L_2500463_2502594,chr3L_2500463_2502390 chr3L_2503143_2503584 chr3L_2502595_2502815 chr3L_2499691_2500462 3.64 4.35 5.66 3.45 5.41 6.52 9.68 1.90 2.84 3.64 3.57 5.06 0.00 0.00 3.17 3.00 2.27 8.77 0.00 3.74 0.00 14.29 6.25 4.76 9.09 0.00 5.00 0.00 12.50 7.69 6.38 0.00 11.54 3.33 4.17 0.00 10.00 0.00 2.70 6.38 0.00 3.39 1.52 5.33 4.17 2.44 5.26 3.39 1.89 0.00 5.88 9.52 9.09 5.26 5.00 0.00 0.00 3.57 K alternative_first_exon RhoGEF3 chr3L + chr3L_291398_298958;chr3L_293186_298958 chr3L_298140_298958 chr3L_292692_293185 chr3L_297802_298139 chr3L_298959_299016 10.39 9.00 10.71 10.43 14.13 14.13 22.03 13.10 14.40 4.55 12.50 11.40 13.48 11.24 10.26 18.03 9.09 12.04 14.29 30.00 9.78 23.68 11.46 8.53 8.51 8.64 12.96 10.84 6.92 9.09 27.97 8.96 6.19 11.73 12.62 8.26 7.04 9.09 10.30 9.55 5.48 10.39 12.05 11.22 7.69 7.14 7.69 5.80 10.05 14.13 12.06 8.89 4.69 12.00 10.74 8.96 8.16 4.76 K alternative_first_exon stck chr3R + chr3R_4182496_4184192;chr3R_4182818_4184192;chr3R_4184127_4184192 chr3R_4183179_4184192 chr3R_4182689_4182817;chr3R_4184058_4184126 chr3R_4183057_4183178 chr3R_4184193_4184312 15.09 10.87 18.60 19.05 7.32 7.50 12.70 13.43 11.50 17.39 13.16 18.52 22.22 20.00 13.95 16.36 10.00 13.04 18.18 21.84 15.00 11.72 22.41 15.56 16.13 14.29 14.89 17.86 25.00 13.79 23.53 15.38 24.14 14.86 15.62 9.68 13.16 14.29 9.26 20.63 23.81 10.42 15.38 18.75 32.35 15.22 14.29 29.17 7.78 15.09 25.53 8.89 13.04 17.78 11.48 13.79 8.79 21.21 K alternative_first_exon Ncc69 chr3L - chr3L_12372745_12384422 chr3L_12372745_12380752 chr3L_12384423_12384539 chr3L_12380753_12380932 chr3L_12372239_12372744 0.00 0.00 0.00 0.00 0.00 0.00 11.11 0.00 0.00 NA NA 0.00 NA 0.00 0.00 4.17 0.00 8.33 0.00 6.25 NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 NA 3.57 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 K alternative_first_exon CR42549,mura chr3R - chr3R_5373093_5375013;chr3R_5373093_5375499;chr3R_5373093_5377037 chr3R_5373093_5377487 chr3R_5375500_5375532;chr3R_5377038_5377079 chr3R_5377488_5377528 chr3R_5372520_5373092 74.16 NA NA 78.57 NA NA NA NA 75.00 62.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 69.23 NA NA NA NA NA NA NA 73.33 NA NA NA NA NA NA 92.31 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon Trxr-1 chrX + chrX_8138258_8140126,chrX_8138531_8140126,chrX_8139272_8140126;chrX_8136765_8140126 chrX_8138093_8140126 chrX_8136517_8136764 chrX_8137625_8138092 chrX_8140127_8140472 24.57 26.27 20.00 20.12 25.54 22.71 30.09 21.80 26.90 34.87 17.78 25.59 22.58 22.22 20.91 20.76 27.49 22.97 23.04 21.80 18.81 35.96 30.88 27.18 32.40 24.21 29.64 40.54 36.94 28.93 18.33 25.11 36.43 22.41 28.37 34.78 30.46 25.93 30.68 18.67 31.06 23.31 23.04 20.60 21.10 23.65 25.52 18.44 22.01 29.46 26.82 28.37 19.07 27.78 24.07 23.79 24.57 19.93 K alternative_first_exon CG5059 chr3L - chr3L_20509233_20512316,chr3L_20509233_20512067 chr3L_20509233_20510360,chr3L_20509233_20509798 chr3L_20512317_20512532 chr3L_20510361_20510393 chr3L_20508961_20509232 17.50 28.57 26.32 30.00 24.32 26.42 10.11 27.19 28.23 5.26 17.50 36.73 20.25 29.09 26.67 24.39 24.53 28.89 39.71 19.63 21.28 4.35 14.58 11.76 14.81 18.33 10.53 6.25 3.03 8.33 21.43 16.67 9.52 18.99 8.70 7.69 2.08 13.95 17.78 12.20 12.50 26.21 30.61 13.04 22.22 14.29 13.11 10.53 24.49 9.09 15.69 0.00 8.70 22.22 28.57 9.76 9.30 20.00 K alternative_first_exon Pk61C chr3L + chr3L_135385_135457,chr3L_129909_135457,chr3L_134082_135457,chr3L_132936_135457,chr3L_131959_135457,chr3L_131934_135457;chr3L_132056_135457,chr3L_132531_135457;chr3L_132810_135457 chr3L_129889_135457 chr3L_131849_132055;chr3L_132733_132809 chr3L_129452_129888 chr3L_135458_135842 57.32 52.86 59.57 51.97 44.00 57.75 56.93 49.73 48.47 82.76 47.66 55.86 44.04 57.29 58.76 58.33 55.17 54.41 56.12 57.37 55.95 66.32 60.44 54.17 50.94 50.00 48.05 78.95 66.07 66.29 61.25 70.37 78.50 59.39 73.85 59.32 49.44 56.36 43.10 69.16 76.32 50.82 51.58 63.89 66.67 73.21 60.00 80.39 55.21 53.85 57.32 68.42 45.45 66.67 58.10 51.02 31.58 68.97 K alternative_first_exon pnr chr3R + chr3R_11852561_11864308 chr3R_11860829_11864308 chr3R_11851819_11852560 chr3R_11860112_11860828 chr3R_11864309_11864929 9.13 8.37 8.00 8.53 8.02 8.21 10.11 7.71 8.36 13.40 9.05 8.72 8.90 8.14 7.63 8.98 8.20 28.57 8.15 9.26 12.50 13.19 9.13 10.45 10.46 5.74 10.05 13.89 13.82 8.79 6.27 10.78 9.03 7.93 10.11 9.93 15.24 11.03 10.73 12.41 9.91 7.56 8.23 19.21 13.64 10.06 10.24 12.23 8.04 11.79 9.09 9.20 7.84 10.38 7.67 7.59 11.24 7.39 N alternative_first_exon jar chr3R - chr3R_20084972_20085054,chr3R_20084972_20085556,chr3R_20084972_20085770,chr3R_20084972_20088762;chr3R_20084972_20096620 chr3R_20084972_20085117 chr3R_20096621_20096953 chr3R_20085118_20085212 chr3R_20084777_20084971 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 3.70 0.00 0.00 0.00 4.00 0.00 0.00 0.00 3.03 0.00 4.76 0.00 5.26 9.09 0.00 0.00 0.00 0.00 0.00 0.00 12.50 6.25 0.00 0.00 9.52 3.70 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon pico chrX - chrX_19730788_19742099;chrX_19730788_19743974 chrX_19730788_19744895 chrX_19742100_19742536;chrX_19743975_19744083 chrX_19744896_19746084 chrX_19729677_19730787 90.41 88.64 88.12 89.21 89.23 85.39 88.39 86.18 88.41 94.57 90.77 86.39 85.53 81.91 84.82 85.82 87.50 82.72 86.17 84.75 87.14 93.62 91.67 93.64 94.51 87.21 93.91 94.51 94.02 95.77 79.05 95.65 95.76 86.67 91.51 92.37 94.34 90.83 94.81 91.89 92.19 89.16 85.33 90.91 92.16 89.61 94.23 90.87 86.43 92.16 90.37 92.22 90.41 92.11 85.09 89.36 90.91 94.64 K alternative_first_exon porin chr2L - chr2L_10848864_10850354;chr2L_10848864_10850216;chr2L_10848864_10849030 chr2L_10848864_10850753 chr2L_10850217_10850340;chr2L_10849031_10849065 chr2L_10850754_10850868 chr2L_10848544_10848863 100.00 100.00 99.65 99.72 100.00 100.00 99.63 99.75 99.72 99.26 100.00 99.40 99.49 100.00 100.00 100.00 100.00 99.60 99.64 99.51 100.00 100.00 100.00 100.00 99.02 99.63 99.38 100.00 97.80 99.11 100.00 97.85 99.00 100.00 100.00 98.67 100.00 100.00 100.00 99.68 100.00 100.00 99.52 99.68 100.00 98.56 100.00 98.20 99.83 100.00 99.46 100.00 100.00 99.21 100.00 100.00 100.00 98.31 K alternative_first_exon CG4829 chrX + chrX_16706095_16716589 chrX_16711038_16716589,chrX_16711168_16716589 chrX_16705733_16706094 chrX_16710916_16711037 chrX_16716590_16716805 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_first_exon aPKC chr2R - chr2R_10836930_10848890;chr2R_10836930_10837063 chr2R_10836930_10838191 chr2R_10848891_10849011;chr2R_10837064_10837251 chr2R_10838192_10838414 chr2R_10836879_10836929 0.00 3.23 2.33 0.00 2.86 2.78 0.00 0.00 0.98 6.67 0.00 1.54 0.00 0.00 0.00 0.00 0.00 2.56 0.00 1.45 2.86 1.89 0.00 0.00 0.00 0.00 0.00 5.00 4.55 0.00 2.08 0.00 2.86 1.27 4.55 0.00 2.27 2.44 0.00 1.85 5.88 0.00 0.00 0.00 0.00 4.55 0.00 0.00 1.41 0.00 2.17 2.70 0.00 0.00 2.00 0.00 0.00 5.26 K alternative_first_exon slik chr2R - chr2R_20289295_20290083 chr2R_20289295_20289357 chr2R_20290084_20290245 chr2R_20289358_20289907 chr2R_20289186_20289294 97.44 97.37 98.11 97.62 94.44 95.35 88.66 99.02 97.44 93.75 90.48 98.90 98.41 100.00 93.10 97.87 98.00 95.92 98.31 96.70 97.56 93.75 98.21 97.73 97.22 98.11 98.11 96.88 97.78 97.14 96.23 90.00 98.31 98.02 97.50 100.00 95.24 96.55 97.73 97.40 100.00 96.12 93.62 97.30 88.89 96.97 94.44 100.00 97.89 100.00 98.04 97.37 94.44 90.00 98.46 95.65 100.00 100.00 N alternative_first_exon gish chr3R + chr3R_12107275_12107802,chr3R_12107266_12107802,chr3R_12107657_12107802,chr3R_12106734_12107802;chr3R_12100892_12107802 chr3R_12106747_12107802 chr3R_12099874_12100891 chr3R_12106630_12106746 chr3R_12107803_12108130 78.57 78.57 68.75 79.17 58.33 38.46 79.17 90.00 86.84 81.82 72.73 77.78 63.16 53.33 61.11 63.64 50.00 64.29 46.15 82.61 68.75 57.63 85.29 81.48 88.89 69.23 83.33 83.33 82.61 60.87 72.73 83.33 85.71 85.19 83.33 72.41 77.78 82.35 90.00 77.78 78.57 90.32 64.29 80.65 91.67 76.19 78.57 69.23 84.62 81.82 78.95 92.00 70.59 85.71 61.54 78.95 75.00 65.22 K alternative_first_exon CG33129 chr2L - chr2L_10966410_10967142;chr2L_10966410_10966501;chr2L_10966410_10968437 chr2L_10966410_10968133 chr2L_10966502_10966672;chr2L_10968438_10968583 chr2L_10968134_10968206 chr2L_10965993_10966409 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon G-oalpha47A chr2R + chr2R_6327137_6335703 chr2R_6333130_6335703 chr2R_6325875_6327136 chr2R_6332752_6333129 chr2R_6335704_6335888 62.50 66.67 66.67 66.67 66.67 50.00 66.67 55.56 69.23 66.67 60.00 75.00 50.00 71.43 57.14 60.00 60.00 66.67 50.00 70.00 50.00 88.24 75.00 60.00 83.33 60.00 60.00 85.71 60.00 66.67 66.67 50.00 55.56 58.33 60.00 60.00 80.00 66.67 62.50 66.67 60.00 69.23 50.00 66.67 NA 50.00 75.00 50.00 61.54 75.00 66.67 66.67 50.00 NA 62.50 50.00 83.33 50.00 K alternative_first_exon CG8709,kermit chr2R - chr2R_4035901_4036531;chr2R_4035901_4036432;chr2R_4035901_4043918,chr2R_4035901_4043559 chr2R_4035901_4036812 chr2R_4036433_4036503;chr2R_4043919_4044126 chr2R_4036813_4036924 chr2R_4034423_4035900 0.00 0.00 0.00 2.56 0.00 3.03 4.00 1.85 1.39 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon CG8177 chr3L + chr3L_9758904_9764754;chr3L_9756800_9764754,chr3L_9757294_9764754 chr3L_9763604_9764754 chr3L_9756652_9756799 chr3L_9763383_9763603 chr3L_9764755_9765019 0.00 4.17 4.00 2.00 8.33 0.00 1.75 2.17 1.27 0.00 4.17 2.22 0.00 3.57 0.00 0.00 4.55 0.00 0.00 2.04 4.55 0.00 0.00 4.55 5.56 3.57 0.00 23.08 2.94 0.00 0.00 0.00 3.03 0.00 0.00 0.00 4.00 6.67 0.00 2.63 0.00 0.00 3.85 3.33 0.00 6.67 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 K alternative_first_exon Droj2 chr3R + chr3R_9208529_9209185,chr3R_9208264_9209185,chr3R_9208835_9209185;chr3R_9209067_9209185;chr3R_9207981_9209185 chr3R_9208857_9209185 chr3R_9208987_9209066;chr3R_9207799_9207980 chr3R_9208544_9208856 chr3R_9209186_9210301 2.40 1.11 1.30 4.42 2.04 2.56 3.09 4.46 2.64 1.79 2.78 3.02 4.00 3.12 2.96 4.26 1.92 9.17 2.45 3.31 2.73 2.20 1.63 2.60 3.92 4.17 2.29 4.92 5.11 2.28 3.12 1.80 1.93 1.83 2.40 1.67 1.31 2.27 2.45 1.48 2.02 3.60 3.39 1.95 2.37 1.49 1.79 2.24 2.69 4.69 3.57 3.51 1.39 0.97 1.76 2.23 0.83 1.20 K alternative_first_exon bowl chr2L + chr2L_3772695_3779692 chr2L_3779318_3779692 chr2L_3772461_3772694 chr2L_3778938_3779317 chr2L_3779693_3780579 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 4.17 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.67 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 16.67 NA 0.00 0.00 NA 0.00 0.00 NA NA NA 16.67 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA 0.00 K alternative_first_exon pod1 chrX + chrX_6699642_6699710,chrX_6699505_6699710,chrX_6699283_6699710;chrX_6697800_6699710;chrX_6698211_6699710;chrX_6699509_6699710 chrX_6699040_6699710 chrX_6697720_6697799;chrX_6697930_6698210;chrX_6699418_6699508 chrX_6699018_6699039 chrX_6699711_6700251 4.35 0.00 3.57 3.77 3.57 4.00 1.67 6.98 4.71 11.11 6.90 2.22 4.35 14.81 3.57 2.04 14.29 3.23 3.85 5.00 0.00 0.00 5.56 7.14 0.00 5.26 11.11 0.00 5.26 5.26 2.70 0.00 0.00 6.82 7.69 26.67 9.68 16.67 5.56 3.33 0.00 5.66 4.35 4.76 NA 10.00 10.00 3.12 3.85 NA 5.56 0.00 0.00 NA 5.13 NA 0.00 0.00 K alternative_first_exon Su(z)2 chr2R + chr2R_8884317_8886781 chr2R_8884718_8886781 chr2R_8884030_8884316 chr2R_8884628_8884717 chr2R_8886782_8887003 17.39 6.67 17.39 21.43 15.38 20.00 18.18 14.63 12.77 25.00 10.00 23.81 16.67 20.00 14.81 17.50 20.00 15.79 15.38 13.46 9.09 17.39 14.81 13.33 6.67 16.67 21.43 26.67 37.93 30.43 18.18 16.67 12.82 13.64 12.50 13.64 26.67 8.33 9.52 17.65 26.67 20.93 19.05 33.33 37.50 35.29 20.00 23.64 21.15 12.50 9.09 28.57 11.11 NA 10.71 0.00 NA 31.58 K alternative_first_exon CG3125 chrX - chrX_5637946_5640804 chrX_5637946_5638388 chrX_5640805_5641257 chrX_5638389_5638591 chrX_5632694_5637945 64.71 65.00 69.23 66.67 60.00 68.42 66.67 69.57 70.51 50.00 61.54 64.71 66.67 75.86 61.90 78.05 56.52 60.00 78.57 61.43 70.83 69.70 57.58 57.14 47.06 65.00 45.00 41.67 52.38 54.17 65.22 60.00 60.53 69.39 68.18 59.26 43.90 47.37 45.00 69.70 69.23 66.04 69.57 60.71 57.14 80.00 73.33 67.27 68.42 53.85 69.23 62.50 58.82 55.56 68.75 57.14 41.67 65.62 K alternative_first_exon fbl chr3L + chr3L_20381467_20381768,chr3L_20381664_20381768,chr3L_20381129_20381768;chr3L_20381668_20381768;chr3L_20381102_20381768;chr3L_20377959_20381768 chr3L_20379955_20381768 chr3L_20381514_20381667;chr3L_20380716_20381101;chr3L_20377531_20377958 chr3L_20379392_20379954 chr3L_20381769_20381947 17.72 17.72 22.67 25.00 17.54 19.30 16.67 16.82 16.88 18.57 22.00 22.48 26.32 21.31 18.07 23.53 15.79 23.19 25.42 18.62 19.40 10.47 13.85 16.96 13.24 20.31 15.53 12.31 12.64 13.10 15.24 15.09 12.39 24.07 14.49 18.29 12.32 17.24 15.38 14.91 12.90 20.57 23.64 17.00 11.39 15.73 22.34 18.24 20.61 18.60 20.56 15.25 19.23 14.81 18.29 13.64 19.10 19.17 K alternative_first_exon raw chr2L - chr2L_8735201_8735693,chr2L_8735201_8735725;chr2L_8735201_8740384 chr2L_8735201_8735721 chr2L_8740385_8740660 chr2L_8735722_8735793 chr2L_8734467_8735200 35.71 NA NA 35.71 NA NA 12.50 30.00 38.46 33.33 NA 12.50 NA NA 33.33 50.00 NA NA 28.57 46.15 NA 50.00 50.00 44.44 NA 33.33 NA NA 42.86 50.00 37.50 NA 16.67 11.11 NA NA 53.85 28.57 33.33 37.50 NA 36.36 NA 33.33 NA NA NA 42.86 22.22 NA 42.86 33.33 NA NA NA NA NA NA K alternative_first_exon BEAF-32 chr2R + chr2R_10658570_10659304;chr2R_10658335_10659304 chr2R_10659148_10659304 chr2R_10657975_10658334 chr2R_10658443_10659147 chr2R_10659305_10660135 52.73 52.94 56.06 65.88 54.35 52.94 53.12 54.65 50.00 41.67 52.73 57.43 52.17 52.08 54.69 50.65 51.11 57.14 54.39 56.30 54.72 52.27 55.42 51.39 53.19 54.90 51.56 45.24 51.92 52.94 55.77 54.90 54.29 56.32 55.56 60.42 46.99 49.21 58.62 48.42 52.17 53.51 48.94 38.89 50.00 52.56 45.31 57.41 52.17 53.33 52.56 46.00 45.12 46.77 51.43 50.00 50.53 55.56 K alternative_first_exon spi chr2L - chr2L_19569227_19572142,chr2L_19569227_19577173;chr2L_19569227_19571571;chr2L_19569227_19577185 chr2L_19569227_19572499 chr2L_19571572_19572181;chr2L_19577186_19577324 chr2L_19572500_19572610 chr2L_19567899_19569226 3.60 0.93 2.91 3.75 1.47 4.35 2.70 2.19 5.05 20.00 5.63 4.69 3.36 7.69 3.60 2.11 0.00 0.00 5.63 1.36 0.00 4.82 6.06 2.50 4.82 2.99 2.29 4.35 3.12 1.18 4.14 8.70 7.08 3.33 3.70 1.08 4.62 3.08 2.33 13.08 7.02 3.64 0.94 8.42 4.85 3.82 3.33 13.68 3.32 5.21 2.22 6.19 2.63 5.13 3.87 2.08 1.85 2.82 K alternative_first_exon zip chr2R - chr2R_20898140_20898480,chr2R_20898140_20898992;chr2R_20898140_20898898,chr2R_20898140_20898834;chr2R_20898140_20899373 chr2R_20898140_20898622 chr2R_20898899_20898996;chr2R_20899374_20899488 chr2R_20898623_20898731 chr2R_20897903_20898139 1.69 0.00 1.96 2.65 1.00 1.60 2.07 1.69 2.22 2.53 0.93 1.42 1.25 1.33 1.68 1.45 1.38 0.70 1.12 1.61 1.60 2.35 3.45 6.78 4.17 1.56 5.45 2.86 0.49 2.84 1.63 1.85 1.69 1.00 3.45 4.35 2.33 2.22 1.75 1.10 0.95 1.41 1.35 2.27 3.33 0.71 8.16 1.37 1.79 0.00 3.70 3.77 2.38 6.67 1.97 2.50 0.00 0.88 K alternative_first_exon scb chr2R + chr2R_11136989_11141550 chr2R_11140516_11141550 chr2R_11136290_11136988 chr2R_11140160_11140515 chr2R_11141551_11142541 88.52 86.54 87.50 88.17 87.18 87.76 88.46 87.10 83.33 85.29 84.00 90.91 92.31 84.62 86.27 88.52 82.86 90.91 83.33 92.63 86.67 85.26 91.40 88.16 92.75 91.89 87.37 90.32 92.71 90.91 88.89 94.23 93.06 85.33 88.64 94.85 87.74 89.19 92.79 92.70 91.67 90.32 88.00 88.03 96.25 90.00 93.55 90.16 86.21 77.50 89.80 85.19 92.73 87.76 83.05 94.23 88.46 94.19 K alternative_first_exon CG13085,CG16771 chr2L + chr2L_19426895_19427208,chr2L_19426780_19427208;chr2L_19427121_19427208;chr2L_19426699_19427208 chr2L_19426808_19427208 chr2L_19427087_19427120;chr2L_19426322_19426698 chr2L_19426758_19426807 chr2L_19427209_19429224 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 0.00 0.00 0.00 K alternative_first_exon Men chr3R - chr3R_8545750_8547857 chr3R_8545750_8546338 chr3R_8547858_8548267 chr3R_8546339_8546506 chr3R_8545125_8545749 100.00 NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 83.33 NA NA NA NA NA NA NA K alternative_first_exon Droj2 chr3R + chr3R_9208529_9209185,chr3R_9208264_9209185,chr3R_9208835_9209185;chr3R_9208857_9209185;chr3R_9209067_9209185 chr3R_9207981_9209185 chr3R_9208544_9208856;chr3R_9208987_9209066 chr3R_9207799_9207980 chr3R_9209186_9210301 96.21 98.33 98.05 92.82 96.94 97.44 95.88 95.05 94.39 98.21 96.30 95.47 95.20 96.09 94.08 94.19 94.23 88.07 95.09 94.49 95.45 97.17 97.55 95.45 96.08 94.17 96.00 93.44 92.77 96.20 96.35 97.30 97.11 96.79 95.81 97.91 96.08 96.97 96.93 97.78 97.98 95.05 95.76 96.89 96.21 97.27 97.76 97.26 96.63 94.79 95.09 94.74 98.15 98.54 97.65 96.88 98.35 98.00 K alternative_first_exon CG12428 chr3R - chr3R_23531574_23532266;chr3R_23531574_23532276 chr3R_23531574_23531981,chr3R_23531574_23531786 chr3R_23532277_23532468 chr3R_23531982_23531987 chr3R_23531186_23531573 63.97 63.64 66.67 42.11 NA NA 72.22 64.71 60.00 NA NA 42.86 NA NA NA NA 66.67 NA NA 65.22 NA 76.47 57.14 81.82 NA 60.00 50.00 53.85 NA 78.57 87.50 NA 81.82 NA 50.00 NA 81.82 NA NA 64.29 NA 52.63 NA NA NA 60.00 NA 72.73 59.09 NA 76.92 54.55 NA NA 50.00 NA NA NA K alternative_first_exon Tango13 chrX + chrX_13470216_13470644 chrX_13470385_13470644 chrX_13469935_13470215 chrX_13470241_13470384 chrX_13470645_13471697 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 1.33 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 4.26 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon CG5961 chr3R - chr3R_8285631_8285980 chr3R_8285631_8285694 chr3R_8285981_8286016 chr3R_8285695_8285922 chr3R_8284922_8285630 90.00 80.00 84.62 85.71 88.89 80.00 94.44 85.00 83.33 100.00 100.00 88.89 80.00 83.33 92.31 94.44 80.00 91.67 84.62 80.77 90.91 86.67 92.86 94.12 NA 72.73 84.62 92.31 80.00 90.00 95.00 88.89 88.89 86.36 87.50 70.00 100.00 90.00 91.67 91.30 88.89 93.33 88.89 93.33 90.00 84.62 81.82 93.75 91.30 91.67 94.12 81.82 92.86 90.00 91.67 100.00 94.44 93.75 K alternative_first_exon Aph-4 chr3R + chr3R_26875042_26876373 chr3R_26875790_26876373 chr3R_26874654_26875041 chr3R_26875531_26875789 chr3R_26876374_26876615 0.00 0.00 0.00 10.00 0.00 0.00 0.00 0.00 9.09 0.00 0.00 10.00 14.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.29 3.03 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 4.55 0.00 7.14 NA 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.50 0.00 K alternative_first_exon Mmp1 chr2R - chr2R_20569965_20574525;chr2R_20569965_20572229 chr2R_20569965_20575418 chr2R_20574526_20574897;chr2R_20572230_20572613 chr2R_20575419_20575704 chr2R_20569737_20569964 49.49 50.42 54.03 48.76 59.79 54.61 56.86 46.94 47.72 32.31 51.81 48.81 49.32 53.38 48.28 49.49 49.22 48.98 49.39 46.77 50.00 41.67 50.25 58.17 56.45 53.28 56.55 48.42 37.27 40.13 53.67 28.40 19.43 52.26 49.45 54.11 52.17 59.40 56.90 39.18 20.69 49.61 46.60 47.40 29.13 38.54 58.46 13.66 47.66 59.74 55.22 56.80 45.83 53.66 50.85 52.00 63.39 14.00 K alternative_first_exon tmod chr3R + chr3R_26397152_26397530;chr3R_26359230_26397530 chr3R_26389204_26397530 chr3R_26396879_26397151;chr3R_26358605_26359229 chr3R_26388894_26389203 chr3R_26397531_26397683 100.00 100.00 100.00 100.00 100.00 100.00 97.96 100.00 98.31 95.65 100.00 100.00 100.00 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 90.00 100.00 97.06 100.00 100.00 96.88 86.67 90.00 100.00 100.00 100.00 95.24 100.00 100.00 100.00 97.14 100.00 96.15 97.87 100.00 97.78 100.00 96.55 100.00 100.00 100.00 90.00 100.00 97.56 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 K alternative_first_exon RpL5 chr2L - chr2L_22429111_22429352 chr2L_22429111_22429268 chr2L_22429353_22429419 chr2L_22429269_22429350 chr2L_22428847_22429110 99.28 99.31 99.47 99.38 99.36 99.56 99.78 98.45 99.73 98.73 99.47 99.69 99.74 99.65 98.25 99.80 98.74 99.34 98.82 99.48 99.28 97.60 99.77 99.85 99.81 98.18 99.59 81.95 80.70 94.99 96.95 87.04 84.56 98.74 97.69 95.67 99.96 100.00 99.95 57.03 71.05 97.70 99.08 87.48 90.62 87.85 99.79 76.85 98.28 99.88 99.92 99.91 94.13 99.64 98.52 99.62 99.93 94.16 K alternative_first_exon rols chr3L - chr3L_12021979_12054080 chr3L_12021979_12048293 chr3L_12054081_12055009 chr3L_12048294_12049544 chr3L_12021796_12021978 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon CG11760,CG8116 chr3R + chr3R_4544094_4545525 chr3R_4545311_4545525 chr3R_4543571_4544093 chr3R_4544920_4545310 chr3R_4545526_4545867 2.86 4.76 4.88 1.35 0.00 2.94 2.41 1.52 1.06 3.12 2.86 5.19 2.63 2.78 4.00 2.04 3.03 2.13 2.44 2.08 3.03 3.64 2.67 3.12 4.76 2.94 3.03 6.58 4.35 3.92 4.17 5.71 4.76 2.82 2.44 3.70 2.99 2.00 1.56 4.05 2.13 2.50 2.86 2.13 4.88 2.78 2.13 3.51 1.23 1.61 3.03 2.70 2.86 2.27 2.00 2.44 1.64 3.57 K alternative_first_exon mrj chr2R - chr2R_12093585_12108627;chr2R_12093585_12093676;chr2R_12093585_12097694;chr2R_12093585_12109174 chr2R_12093585_12097072 chr2R_12093677_12093767;chr2R_12097695_12097904;chr2R_12109175_12109301 chr2R_12097073_12097348 chr2R_12093406_12093584 8.57 5.26 10.81 9.64 8.57 6.25 13.33 9.09 9.62 5.56 5.41 7.87 6.52 10.34 9.84 7.61 9.84 4.65 9.59 11.46 6.98 12.12 12.96 8.16 8.57 8.70 16.33 28.57 5.00 7.14 7.25 7.69 17.65 9.47 5.13 20.69 9.38 16.67 12.50 10.71 14.81 6.84 8.33 8.70 5.56 4.76 2.22 7.41 7.78 2.94 10.00 8.82 5.56 3.85 8.57 6.06 2.78 10.00 K alternative_first_exon RhoGAPp190 chrX - chrX_17544272_17544863,chrX_17544272_17545218,chrX_17544272_17546421;chrX_17544272_17546531,chrX_17544272_17546123 chrX_17544272_17544752 chrX_17546532_17546539 chrX_17544753_17544933 chrX_17542979_17544271 3.96 4.55 3.70 2.22 3.23 3.85 3.92 4.44 4.23 5.00 3.57 1.56 3.85 4.76 5.41 9.68 0.00 3.85 11.76 6.00 0.00 6.90 10.00 NA 7.69 6.90 NA NA 8.33 0.00 2.94 NA 5.56 4.17 5.26 6.67 6.25 NA NA 2.00 NA 5.36 4.00 0.00 NA 0.00 NA 1.85 3.77 NA 0.00 NA NA NA 2.86 NA NA 0.00 K alternative_first_exon CG4199 chrX - chrX_1965614_1966582;chrX_1965614_1967409,chrX_1965614_1967149;chrX_1965614_1965671 chrX_1965614_1965872 chrX_1967410_1967460;chrX_1965672_1965832 chrX_1965873_1966096 chrX_1965393_1965613 93.13 95.21 94.81 92.42 96.88 96.90 89.73 91.28 93.23 91.76 95.35 95.13 88.07 92.98 94.62 91.97 92.13 94.37 92.37 92.58 95.88 70.97 94.20 93.17 93.97 93.13 94.53 90.85 87.30 93.75 91.93 89.52 92.19 92.89 93.38 95.89 94.76 95.48 95.45 91.95 86.32 92.66 92.13 91.40 94.74 92.77 92.94 93.16 91.79 95.57 92.96 93.94 93.63 94.78 95.62 95.97 92.74 88.54 K alternative_first_exon Rox8 chr3R - chr3R_19872211_19872659,chr3R_19872211_19872663,chr3R_19872211_19873220;chr3R_19872211_19873682 chr3R_19872211_19873540 chr3R_19873683_19873748 chr3R_19873541_19873678 chr3R_19871160_19872210 44.44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 44.44 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon CG33156 chr2R - chr2R_9437422_9437491;chr2R_9437422_9439612,chr2R_9437422_9439456 chr2R_9437422_9438177 chr2R_9437492_9437780;chr2R_9439613_9439911 chr2R_9438178_9438952 chr2R_9437104_9437421 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 5.88 NA 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 6.67 11.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon Chc chrX - chrX_15728405_15728566,chrX_15728405_15728738,chrX_15728405_15728853,chrX_15728405_15729085,chrX_15728405_15729273;chrX_15728405_15729476,chrX_15728405_15729370,chrX_15728405_15729357,chrX_15728405_15729319,chrX_15728405_15729260 chrX_15728405_15728664 chrX_15729477_15729506 chrX_15728665_15728742 chrX_15728156_15728404 1.20 1.37 0.87 1.84 2.50 2.56 1.05 1.20 4.05 3.70 1.75 2.20 0.81 1.74 0.00 1.81 3.37 0.00 3.27 2.16 1.28 0.91 0.00 1.18 0.00 1.08 0.00 0.00 1.96 1.49 1.20 3.45 0.00 1.92 0.00 2.41 1.69 0.00 0.00 0.81 0.00 1.46 0.91 2.22 8.33 3.77 0.00 5.26 1.05 0.00 0.00 1.22 0.00 0.00 0.90 0.00 0.00 3.03 K alternative_first_exon CG5953 chr2L - chr2L_16511447_16527389 chr2L_16511447_16519969 chr2L_16527390_16528439 chr2L_16519970_16520177 chr2L_16509120_16511446 1.42 0.93 2.11 2.86 1.15 1.08 3.57 2.22 2.14 2.30 1.33 1.56 4.35 1.15 0.88 3.09 2.56 2.20 3.26 2.42 1.54 1.42 2.20 0.74 0.92 1.04 0.70 3.03 0.73 1.63 1.98 1.52 0.66 2.61 2.20 1.64 0.52 1.41 0.56 1.02 2.44 1.93 1.33 2.07 1.08 0.00 1.06 0.68 2.16 1.20 2.60 1.20 1.37 0.00 2.61 1.22 1.39 1.10 K alternative_first_exon alt chr3R - chr3R_13503901_13504925,chr3R_13503901_13505368;chr3R_13503901_13507816;chr3R_13503901_13504865;chr3R_13503901_13508180,chr3R_13503901_13508178,chr3R_13503901_13508123 chr3R_13503901_13504373 chr3R_13507817_13507965;chr3R_13504866_13505009;chr3R_13508181_13508234 chr3R_13504374_13504425 chr3R_13502559_13503900 0.93 2.56 1.59 0.00 2.08 0.00 0.00 0.62 0.65 0.00 2.17 0.96 2.08 2.90 1.45 0.90 0.00 1.52 0.00 0.72 1.96 0.00 0.00 0.00 0.00 2.67 3.85 8.00 5.88 4.35 1.04 0.00 4.55 1.77 6.25 0.00 5.00 0.00 4.55 3.12 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 1.27 4.00 3.70 0.00 0.00 NA 1.45 0.00 0.00 3.03 K alternative_first_exon CLIP-190 chr2L + chr2L_17386394_17394429;chr2L_17389531_17394429 chr2L_17385896_17394429 chr2L_17386146_17386393;chr2L_17389341_17389530 chr2L_17385561_17385895 chr2L_17394430_17394492 93.33 100.00 92.31 91.43 94.12 100.00 89.29 86.49 98.15 83.33 94.74 95.65 100.00 95.65 92.00 93.75 95.00 95.00 95.24 94.87 100.00 88.89 83.87 88.46 93.75 91.30 96.30 46.67 91.67 88.89 94.74 81.82 91.30 93.94 93.33 87.50 100.00 100.00 100.00 94.12 91.67 95.35 93.75 88.24 100.00 88.89 92.31 90.48 91.11 93.33 97.06 92.86 92.86 100.00 95.83 90.00 77.78 76.47 N alternative_first_exon CG31751 chr2L + chr2L_18677473_18682264 chr2L_18679162_18682264 chr2L_18677203_18677472 chr2L_18678722_18679161 chr2L_18682265_18682389 100.00 100.00 100.00 85.71 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_first_exon Cpr chr2L + chr2L_6343070_6344158 chr2L_6343942_6344158 chr2L_6342727_6343069 chr2L_6343726_6343941 chr2L_6344159_6344283 0.23 0.00 0.00 0.30 0.00 0.47 0.32 0.31 0.19 0.36 0.57 0.22 0.00 0.00 0.40 0.00 0.58 0.00 0.52 0.17 0.49 0.52 0.18 0.00 0.00 0.00 0.27 0.72 0.31 0.30 0.74 0.00 0.20 0.29 0.35 0.31 0.20 0.00 0.00 0.21 0.00 0.20 0.00 0.28 0.00 0.28 0.31 0.00 0.23 0.00 0.25 0.47 0.40 0.00 0.00 0.38 0.80 0.52 K alternative_first_exon Fmr1 chr3R - chr3R_5933202_5934416 chr3R_5933202_5933951 chr3R_5934417_5934633 chr3R_5933952_5934033 chr3R_5933152_5933201 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.58 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon CG1041 chr3R - chr3R_2199103_2199535 chr3R_2199103_2199181 chr3R_2199536_2199747 chr3R_2199182_2199296 chr3R_2199024_2199102 26.79 NA NA NA NA NA NA 28.57 25.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon tmod chr3R + chr3R_26397152_26397530;chr3R_26389204_26397530 chr3R_26359230_26397530 chr3R_26396879_26397151;chr3R_26388894_26389203 chr3R_26358605_26359229 chr3R_26397531_26397683 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon Tpr2 chr2L + chr2L_16502075_16505495;chr2L_16492052_16505495 chr2L_16497152_16505495 chr2L_16491542_16492051 chr2L_16496766_16497151 chr2L_16505496_16505948 0.48 0.48 0.38 0.49 0.52 0.50 0.58 0.72 0.37 0.48 0.47 0.25 0.47 0.45 0.38 0.78 1.00 0.90 0.76 0.37 0.48 1.29 0.92 0.48 0.60 0.81 1.15 2.35 0.49 0.46 0.40 0.66 0.30 0.52 1.03 0.51 0.35 0.00 0.41 0.27 0.00 0.22 0.52 0.34 0.00 0.46 0.51 0.39 0.68 1.02 1.16 0.00 0.00 0.85 0.35 0.00 0.40 0.28 K alternative_first_exon Oda chr2R - chr2R_8055709_8061595;chr2R_8055709_8055927 chr2R_8055709_8058428 chr2R_8061596_8061767;chr2R_8055928_8056069 chr2R_8058429_8058796 chr2R_8055499_8055708 1.36 1.00 1.13 1.08 1.10 0.68 0.78 0.83 0.94 2.73 1.10 1.46 1.20 1.12 1.22 0.71 0.92 1.78 1.00 1.37 1.29 4.79 2.35 2.31 3.56 0.81 2.10 7.22 3.40 2.09 0.37 1.28 4.31 0.92 2.51 3.31 2.46 1.68 1.69 1.87 3.46 0.93 0.85 1.36 2.68 1.55 3.31 2.31 1.04 1.35 1.83 1.42 1.11 2.02 0.93 1.45 0.93 0.90 K alternative_first_exon Sh3beta chr3L - chr3L_7361085_7361784;chr3L_7361085_7361989 chr3L_7361085_7361162 chr3L_7361990_7362344 chr3L_7361163_7361290 chr3L_7360659_7361084 4.14 4.39 4.25 2.61 6.62 3.85 2.40 2.70 3.52 6.44 3.64 3.31 2.56 3.21 3.14 3.66 2.68 6.73 3.09 4.44 4.36 4.68 4.96 3.63 3.52 3.32 4.72 5.28 5.28 4.35 3.11 3.72 7.05 3.41 5.21 4.23 5.71 4.51 5.42 2.71 5.46 3.22 4.01 4.12 4.90 4.47 5.29 5.76 3.42 5.68 3.84 4.78 2.54 4.63 4.14 4.13 3.50 5.11 K alternative_first_exon Hnf4 chr2L - chr2L_8690253_8698848;chr2L_8690253_8704360 chr2L_8690253_8691013 chr2L_8704361_8704540 chr2L_8691014_8691213 chr2L_8689814_8690252 63.79 69.64 51.28 28.89 57.14 46.67 34.21 31.91 45.98 73.08 58.62 50.62 44.00 41.67 51.06 30.00 54.55 48.39 46.67 51.72 55.88 82.14 72.94 75.61 75.81 52.78 63.04 73.68 77.42 89.77 58.14 80.95 86.27 47.46 76.81 78.95 73.58 70.77 73.00 73.08 81.67 59.30 35.71 63.79 80.68 76.32 67.65 85.19 53.75 66.04 72.31 58.54 64.00 72.73 44.44 63.83 57.14 74.45 N alternative_first_exon ash2 chr3R + chr3R_20477425_20477582,chr3R_20476974_20477582;chr3R_20476717_20477582 chr3R_20477353_20477582 chr3R_20476372_20476716 chr3R_20477249_20477352 chr3R_20477583_20477963 46.88 42.11 46.15 50.72 35.90 57.69 45.28 62.50 45.92 27.59 45.00 40.91 55.00 57.89 52.94 57.89 45.71 51.06 51.22 44.35 47.37 52.73 36.49 40.85 37.78 45.65 41.94 35.29 50.00 44.68 61.22 48.15 56.10 47.14 46.67 44.68 33.33 31.25 30.77 50.52 48.08 48.89 51.22 46.67 45.31 53.33 48.10 58.33 52.81 39.73 45.45 47.62 35.85 46.88 53.33 46.15 48.72 57.61 K alternative_first_exon Kr-h1 chr2L + chr2L_6083741_6092994 chr2L_6092245_6092994 chr2L_6081808_6083740 chr2L_6091417_6092244 chr2L_6092995_6093707 0.00 0.00 5.26 0.00 0.00 0.00 3.23 0.00 2.33 0.00 0.00 3.03 4.76 5.26 0.00 3.03 0.00 0.00 0.00 2.70 0.00 11.76 5.00 0.00 0.00 5.88 6.67 7.69 6.25 6.25 0.00 11.11 5.00 0.00 7.69 6.67 7.14 0.00 0.00 4.35 8.33 2.63 0.00 5.56 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 4.17 K alternative_first_exon gw chr4 - chr4_679135_680594,chr4_679135_680693,chr4_679135_681128,chr4_679135_682359;chr4_679135_679976;chr4_679135_680546,chr4_679135_680503,chr4_679135_680270,chr4_679135_680185 chr4_679135_681206,chr4_679135_681054 chr4_679977_680181;chr4_680547_680557 chr4_681207_681222 chr4_678528_679134 76.92 80.00 80.00 72.37 NA 73.33 76.27 78.48 74.65 NA 73.33 79.59 71.79 73.68 85.71 74.65 79.17 66.67 76.92 72.73 76.92 50.00 90.00 76.92 NA 76.00 80.00 NA NA 68.42 75.00 NA 85.71 68.75 75.00 86.96 NA NA NA 83.33 NA 69.23 80.00 83.33 NA NA NA 78.57 70.15 NA 88.00 84.62 NA NA 75.00 NA NA 94.12 K alternative_first_exon PRL-1 chr2L - chr2L_16250159_16251240;chr2L_16250159_16257075 chr2L_16250159_16251623 chr2L_16257076_16257603 chr2L_16251624_16251786 chr2L_16250081_16250158 31.65 29.94 40.75 35.04 34.94 37.93 32.15 36.89 29.20 32.05 35.09 34.10 31.88 30.83 35.46 38.31 36.89 34.52 32.23 42.99 39.46 27.42 30.74 29.19 28.78 31.65 21.89 26.19 18.64 29.07 40.24 30.49 29.88 35.96 24.03 22.35 35.03 30.33 24.85 26.34 19.15 35.70 35.19 35.63 32.94 25.16 28.44 23.44 36.59 30.11 24.64 32.05 31.40 26.76 37.67 27.88 32.00 28.88 K alternative_first_exon Nc73EF chr3L + chr3L_16952138_16952198,chr3L_16950952_16952198,chr3L_16950606_16952198;chr3L_16948914_16952198;chr3L_16950615_16952198,chr3L_16950628_16952198 chr3L_16948643_16952198,chr3L_16948692_16952198 chr3L_16948864_16948913;chr3L_16950542_16950614 chr3L_16948605_16948642 chr3L_16952199_16952316 46.67 57.69 50.00 65.38 47.83 46.43 61.54 55.36 45.24 52.38 64.71 60.49 55.88 51.85 54.55 55.81 48.00 52.63 48.65 52.94 41.94 38.46 23.81 26.32 34.62 46.67 40.74 15.79 38.46 40.00 65.71 NA 55.56 57.35 20.83 25.00 30.61 26.47 25.71 32.35 NA 59.46 57.69 36.36 45.45 35.00 26.32 69.23 58.23 17.65 17.07 48.00 41.18 18.18 51.52 24.00 40.00 86.67 K alternative_first_exon Doa chr3R + chr3R_24715823_24718923 chr3R_24717714_24718923 chr3R_24715727_24715822 chr3R_24717616_24717713 chr3R_24718924_24720784 85.35 91.67 NA 94.44 91.67 NA 91.67 94.74 84.00 NA NA 88.89 NA 75.00 84.62 100.00 66.67 NA 81.82 100.00 NA NA 89.29 83.33 NA 76.92 75.00 NA NA 70.00 76.92 NA 57.14 80.00 61.54 68.42 80.95 100.00 94.44 85.00 69.23 85.00 NA 92.31 NA 90.91 NA 85.71 95.00 88.89 94.12 100.00 NA NA 84.21 88.89 NA NA K alternative_first_exon Vha68-2 chr2L + chr2L_12975470_12975613;chr2L_12974422_12975613,chr2L_12974444_12975613 chr2L_12974747_12975613 chr2L_12974385_12974421 chr2L_12974622_12974746 chr2L_12975614_12975712 2.11 2.30 2.72 3.65 2.83 1.60 1.97 2.67 2.91 0.00 2.33 1.97 0.00 2.11 1.96 1.51 0.94 2.19 1.97 1.33 3.25 5.56 2.44 1.37 0.00 1.41 2.35 2.78 2.30 1.61 1.56 1.33 2.44 2.28 2.56 3.57 0.58 1.90 0.79 1.70 0.00 3.32 2.88 1.80 0.00 1.49 3.95 2.94 2.72 4.08 2.02 2.90 2.08 0.00 1.64 2.67 3.08 3.57 K alternative_first_exon HmgD chr2R + chr2R_17600940_17602910,chr2R_17600947_17602910;chr2R_17600893_17602910 chr2R_17601672_17602910 chr2R_17600836_17600892 chr2R_17601465_17601671 chr2R_17602911_17603122 26.72 26.47 37.04 27.78 23.21 24.59 23.81 26.15 27.12 NA 20.97 25.00 23.08 15.79 26.97 28.12 32.08 20.31 21.79 29.33 22.58 NA 28.57 20.00 NA 25.93 18.75 NA 16.67 17.65 31.37 29.03 32.14 28.00 NA 50.00 6.25 NA NA 25.71 31.58 28.95 29.03 30.00 34.62 22.22 30.00 20.00 34.44 NA NA NA 36.84 NA 30.77 NA NA 22.73 N alternative_first_exon CG6951,Clc chr3L + chr3L_20234785_20235884 chr3L_20235768_20235884 chr3L_20234667_20234784 chr3L_20235590_20235767 chr3L_20235885_20236835 99.37 100.00 95.45 97.86 100.00 99.23 100.00 97.00 100.00 100.00 98.85 95.67 100.00 100.00 100.00 96.25 100.00 100.00 100.00 95.70 100.00 100.00 95.59 95.58 100.00 100.00 100.00 89.89 100.00 100.00 99.37 94.74 100.00 100.00 95.88 100.00 95.97 95.60 95.04 94.07 90.79 96.71 100.00 100.00 99.17 93.63 100.00 90.48 96.26 95.76 100.00 100.00 100.00 96.90 97.53 94.85 100.00 89.43 K alternative_first_exon Acsl,CG30354 chr2R + chr2R_4565692_4565934,chr2R_4565534_4565934;chr2R_4553817_4565934 chr2R_4564113_4565934 chr2R_4553678_4553816 chr2R_4563905_4564112 chr2R_4565935_4566373 99.38 99.23 99.46 100.00 99.22 100.00 99.48 100.00 99.35 98.73 98.43 98.02 99.03 100.00 99.38 98.84 99.17 99.24 99.35 97.87 100.00 99.06 99.52 99.36 98.18 100.00 98.84 98.08 99.35 100.00 99.49 98.44 100.00 99.57 100.00 100.00 99.48 99.31 99.50 100.00 100.00 99.63 100.00 99.24 97.37 100.00 98.73 99.37 100.00 98.61 99.44 98.89 100.00 100.00 100.00 98.72 98.68 100.00 K alternative_first_exon ctp chrX + chrX_4582062_4585669 chrX_4582325_4585669,chrX_4582351_4585669,chrX_4582706_4585669 chrX_4581834_4582061 chrX_4582298_4582324 chrX_4585670_4585877 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.79 100.00 100.00 99.63 99.80 100.00 100.00 100.00 99.82 100.00 100.00 99.73 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.46 100.00 100.00 100.00 100.00 100.00 100.00 99.57 100.00 100.00 100.00 100.00 100.00 99.81 100.00 99.72 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_first_exon ATPCL chr2R - chr2R_11887476_11887640,chr2R_11887476_11888411;chr2R_11887476_11888692 chr2R_11887476_11887599 chr2R_11888693_11888765 chr2R_11887600_11887789 chr2R_11887310_11887475 56.15 60.00 52.10 55.91 51.72 56.04 50.71 52.47 57.07 63.41 46.67 56.35 48.57 55.66 47.20 59.43 53.26 60.58 50.00 56.15 54.84 68.99 61.39 58.33 63.33 59.06 67.31 61.54 52.83 55.29 58.12 41.67 59.51 53.85 51.56 63.53 58.43 66.67 59.09 59.24 52.78 56.87 47.76 70.54 52.54 54.93 67.78 46.76 53.67 52.38 64.29 50.00 50.00 63.33 52.68 63.41 62.90 56.82 K alternative_first_exon Hsc70-4 chr3R + chr3R_11069864_11070081,chr3R_11068693_11070081,chr3R_11068450_11070081,chr3R_11068736_11070081,chr3R_11069819_11070081;chr3R_11069017_11070081;chr3R_11068522_11070081;chr3R_11070025_11070081 chr3R_11068903_11070081,chr3R_11068907_11070081 chr3R_11068920_11069016;chr3R_11068370_11068521;chr3R_11069941_11070024 chr3R_11068878_11068902 chr3R_11070082_11072336 0.09 0.05 0.05 0.05 0.28 0.00 0.14 0.08 0.12 0.26 0.06 0.16 0.05 0.00 0.04 0.06 0.11 0.05 0.08 0.16 0.05 0.05 0.09 0.17 0.14 0.05 0.10 0.17 0.20 0.07 0.09 0.13 0.07 0.23 0.04 0.16 0.44 0.33 0.18 0.18 0.06 0.14 0.23 0.09 0.06 0.13 0.00 0.09 0.17 0.11 0.11 0.00 0.14 0.06 0.09 0.13 0.05 0.05 K alternative_first_exon CG9339 chr2L - chr2L_20882465_20903015 chr2L_20882465_20885288 chr2L_20903016_20903559 chr2L_20885289_20885976 chr2L_20882262_20882464 7.87 8.33 6.17 7.38 7.02 6.33 9.09 4.10 9.55 6.25 5.17 8.44 5.26 8.97 6.80 9.48 8.57 6.67 8.70 6.21 8.06 10.75 7.76 8.42 10.91 10.13 7.53 15.38 4.60 7.22 6.52 10.00 4.59 7.30 9.88 9.57 9.80 9.59 7.87 9.63 6.45 9.74 9.59 8.60 4.48 6.67 8.20 4.96 9.94 5.26 8.08 7.94 6.38 5.56 7.41 5.88 10.00 4.82 K alternative_first_exon Alh chr3R - chr3R_2927820_2944679 chr3R_2927820_2932799 chr3R_2944680_2944770 chr3R_2932800_2934139 chr3R_2927321_2927819 42.86 35.71 30.00 35.71 50.00 57.14 41.67 45.45 52.17 66.67 25.00 44.44 40.00 62.50 50.00 42.86 25.00 33.33 25.00 33.33 42.86 30.00 38.89 46.15 50.00 42.86 36.36 22.22 20.00 30.00 45.45 50.00 50.00 50.00 54.55 33.33 41.18 40.00 40.00 42.86 60.00 52.38 28.57 33.33 50.00 45.45 25.00 70.00 44.44 30.00 60.00 42.86 50.00 33.33 45.45 33.33 44.44 82.35 K alternative_first_exon CG14619 chrX + chrX_21858875_21859262,chrX_21857858_21859262,chrX_21857923_21859262,chrX_21858374_21859262,chrX_21858580_21859262;chrX_21859028_21859262;chrX_21857700_21859262 chrX_21858396_21859262 chrX_21858727_21859027;chrX_21857639_21857699 chrX_21858282_21858395 chrX_21859263_21859387 3.12 NA 0.00 3.57 0.00 9.09 0.00 0.00 3.92 NA 0.00 3.03 5.26 7.14 0.00 3.85 5.88 0.00 0.00 3.45 10.00 NA 7.14 0.00 NA 0.00 12.50 NA NA NA 0.00 NA 8.70 3.12 NA 8.33 NA NA NA 5.88 NA 0.00 0.00 0.00 NA NA NA 0.00 4.65 NA NA NA NA NA 5.88 NA NA NA K alternative_first_exon kuk chr3R + chr3R_12907750_12908385,chr3R_12906028_12908385;chr3R_12906079_12908385 chr3R_12908230_12908385 chr3R_12905951_12906078 chr3R_12908112_12908229 chr3R_12908386_12910503 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 K alternative_first_exon yu chrX - chrX_5311408_5312383;chrX_5311408_5314226;chrX_5311408_5314484 chrX_5311408_5313001 chrX_5314227_5314369;chrX_5314485_5314896 chrX_5313002_5313124 chrX_5310223_5311407 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 1.47 0.51 0.00 0.92 0.00 0.00 0.00 1.22 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 3.45 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon His3.3B chrX - chrX_9048719_9050156;chrX_9048719_9049436;chrX_9048719_9048817 chrX_9048719_9050612 chrX_9049437_9049646;chrX_9048818_9049038 chrX_9050613_9050721 chrX_9048413_9048718 97.99 98.39 98.11 98.98 98.95 98.85 99.08 98.90 99.26 99.11 99.47 97.76 98.83 97.86 98.94 98.15 98.69 98.44 98.64 97.71 98.69 96.77 97.60 97.04 97.80 98.08 96.39 95.64 94.35 97.82 98.51 97.06 96.81 98.53 98.49 95.78 97.77 97.83 97.99 95.59 95.38 98.64 98.80 96.04 95.12 95.86 96.40 90.16 97.99 94.92 98.46 98.66 97.62 98.68 98.21 97.64 98.31 94.57 K alternative_first_exon Atx2 chr3R + chr3R_11236634_11237842;chr3R_11234912_11237842 chr3R_11235257_11237842 chr3R_11234158_11234911 chr3R_11235173_11235256 chr3R_11237843_11238243 8.70 5.88 8.62 10.11 11.11 12.96 10.53 10.87 14.58 5.56 8.70 8.00 4.55 10.53 10.77 11.69 17.65 14.58 9.09 9.38 13.04 17.07 6.52 7.79 6.38 4.00 6.45 3.12 7.14 4.23 10.00 5.71 5.83 9.41 4.08 5.08 12.90 5.77 9.59 6.25 4.88 11.20 11.32 9.84 4.76 5.56 9.09 2.20 11.54 9.09 6.06 12.77 4.55 7.41 8.70 12.82 6.82 5.88 K alternative_first_exon Jafrac2 chr3L + chr3L_3042451_3043044 chr3L_3042773_3043044 chr3L_3042375_3042450 chr3L_3042550_3042772 chr3L_3043045_3043205 11.54 9.38 11.11 10.91 11.54 13.04 12.00 9.52 12.09 6.67 16.00 6.45 12.50 9.52 8.70 12.50 11.76 13.51 15.00 10.00 14.29 8.00 18.75 12.50 22.22 6.98 16.67 20.00 7.14 5.56 11.43 10.34 6.52 14.00 8.33 18.75 9.09 5.26 9.68 14.29 17.39 10.00 13.79 15.00 11.11 14.71 6.25 11.11 11.27 11.76 17.65 12.00 11.54 22.22 12.20 13.04 8.16 9.09 K alternative_first_exon pAbp chr2R + chr2R_14027778_14028992;chr2R_14027838_14028992 chr2R_14028460_14028992,chr2R_14028922_14028992 chr2R_14027583_14027837 chr2R_14028322_14028459 chr2R_14028993_14029177 100.00 99.05 100.00 98.70 97.96 97.06 99.43 100.00 99.61 100.00 97.67 99.39 99.03 100.00 98.44 99.54 100.00 100.00 100.00 99.08 100.00 100.00 98.18 100.00 100.00 100.00 100.00 98.89 100.00 100.00 97.33 100.00 100.00 99.28 98.31 98.51 99.24 100.00 100.00 98.98 100.00 99.32 97.44 98.29 100.00 100.00 100.00 100.00 99.40 100.00 97.06 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_first_exon CYLD chr2L - chr2L_10297937_10298780 chr2L_10297937_10298022 chr2L_10298781_10298989 chr2L_10298023_10298257 chr2L_10297705_10297936 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon CG13865 chrX + chrX_22415518_22416288 chrX_22415945_22416288 chrX_22415346_22415517 chrX_22415655_22415944 chrX_22416289_22417005 100.00 100.00 100.00 95.60 100.00 100.00 100.00 100.00 99.19 100.00 100.00 97.98 100.00 100.00 98.61 100.00 100.00 100.00 98.31 99.31 100.00 93.62 100.00 100.00 100.00 96.55 100.00 100.00 98.08 97.87 98.41 100.00 98.51 100.00 98.04 100.00 100.00 100.00 100.00 97.87 98.39 99.05 100.00 98.25 98.39 98.90 100.00 96.51 99.15 100.00 98.73 100.00 100.00 100.00 98.57 100.00 100.00 98.98 K alternative_first_exon fd68A chr3L - chr3L_11111166_11112495;chr3L_11111166_11112264;chr3L_11111166_11111514;chr3L_11111166_11113709 chr3L_11111166_11113381 chr3L_11112265_11112519;chr3L_11111515_11111566;chr3L_11113710_11113875 chr3L_11113382_11113511 chr3L_11110405_11111165 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 3.33 0.00 1.56 0.00 4.55 0.00 1.61 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 2.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon Letm1 chr2R - chr2R_20402394_20402462,chr2R_20402394_20402670,chr2R_20402394_20402809;chr2R_20402394_20402785,chr2R_20402394_20402753 chr2R_20402394_20402651 chr2R_20402786_20402813 chr2R_20402652_20402738 chr2R_20402059_20402393 0.00 NA 0.00 0.00 NA 0.00 0.00 2.17 0.00 NA 0.00 0.00 0.00 0.00 0.00 2.63 6.67 0.00 0.00 2.86 0.00 NA NA NA NA 0.00 NA NA 6.25 NA 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 23.08 0.00 0.00 NA 0.00 7.14 NA 0.00 10.71 NA NA NA NA NA 0.00 NA NA 0.00 K alternative_first_exon CG2182 chr3R - chr3R_1484430_1485256 chr3R_1484430_1484701 chr3R_1485257_1485631 chr3R_1484702_1484732 chr3R_1483863_1484429 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon Aats-lys chrX - chrX_9502326_9502751 chrX_9502326_9502454 chrX_9502752_9502917 chrX_9502455_9502688 chrX_9501662_9502325 18.98 14.14 19.67 20.69 19.12 21.82 22.22 14.13 16.18 13.64 20.00 20.97 18.64 16.95 21.59 18.29 16.67 18.99 19.12 13.86 23.19 35.43 14.69 19.13 22.58 25.33 31.52 17.27 19.48 17.00 26.19 20.31 14.29 19.32 21.43 18.52 20.29 14.44 21.55 13.16 16.67 24.29 20.00 16.19 16.83 19.05 16.16 16.30 18.98 21.43 14.96 15.94 19.75 16.85 16.67 11.82 15.79 15.56 K alternative_first_exon th chr3L - chr3L_16033166_16033537,chr3L_16033166_16034018,chr3L_16033166_16037613;chr3L_16033166_16039584;chr3L_16033166_16035506 chr3L_16033166_16043557 chr3L_16039585_16039937;chr3L_16035507_16035665 chr3L_16043558_16043755 chr3L_16031505_16033165 0.41 0.31 0.28 0.42 0.83 0.64 0.50 0.49 0.29 0.00 0.36 0.29 0.47 0.86 0.26 0.33 0.78 0.35 0.18 0.51 0.44 1.69 0.70 0.28 0.00 0.27 0.27 0.64 0.42 0.40 0.49 0.00 0.43 0.50 0.65 0.35 0.54 0.00 0.50 0.41 0.33 0.27 0.65 0.31 0.46 0.40 0.34 0.23 0.40 0.59 1.05 0.33 0.51 0.49 0.64 0.75 0.27 0.21 N alternative_first_exon desat1 chr3R + chr3R_8269076_8270520,chr3R_8267942_8270520,chr3R_8269415_8270520;chr3R_8267331_8270520;chr3R_8269860_8270520;chr3R_8269445_8270520 chr3R_8265434_8270520 chr3R_8267149_8267330;chr3R_8269763_8269859;chr3R_8269304_8269444 chr3R_8265322_8265433 chr3R_8270521_8270840 28.98 29.67 31.34 36.14 37.14 26.20 27.11 29.58 31.69 33.33 23.19 29.03 39.86 33.13 30.66 28.98 35.99 30.59 32.26 26.54 20.25 23.33 27.15 22.61 23.83 33.51 24.52 18.18 25.10 23.08 24.04 32.78 31.97 32.68 24.02 26.09 27.50 21.33 17.23 24.06 35.85 30.43 30.45 22.06 32.59 29.15 21.40 38.30 31.67 23.51 25.49 26.48 27.85 21.74 31.51 28.21 36.95 46.06 K alternative_first_exon hebe chr2R - chr2R_5717365_5717821;chr2R_5717365_5723947;chr2R_5717365_5721013,chr2R_5717365_5720983 chr2R_5717365_5718792 chr2R_5723948_5724147;chr2R_5721014_5721068 chr2R_5718793_5718834 chr2R_5715606_5717364 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon psq chr2R + chr2R_6493563_6498054,chr2R_6493640_6498054;chr2R_6449696_6498054;chr2R_6471629_6498054 chr2R_6457648_6498054 chr2R_6449531_6449695;chr2R_6471199_6471628 chr2R_6457312_6457647 chr2R_6498055_6499020 37.50 43.75 32.35 35.85 29.17 36.36 48.78 46.03 47.25 25.00 39.29 38.71 39.47 47.37 37.50 50.00 41.38 35.71 42.42 32.20 27.59 27.59 37.84 27.78 37.50 26.92 23.33 12.50 40.00 31.82 36.84 44.44 24.00 47.83 37.50 29.17 30.56 25.93 29.63 34.88 33.33 41.89 44.83 42.86 20.00 35.71 38.46 42.86 43.24 45.45 29.73 44.44 22.22 27.27 38.24 26.67 42.86 58.82 K alternative_first_exon CG10602 chr2L - chr2L_18857404_18858951 chr2L_18857404_18857587,chr2L_18857404_18857541,chr2L_18857404_18857511 chr2L_18858952_18859075 None chr2L_18857177_18857403 97.87 96.67 100.00 100.00 96.67 100.00 97.50 97.87 94.74 100.00 100.00 95.83 86.67 96.97 96.88 95.83 100.00 100.00 100.00 97.56 100.00 100.00 100.00 96.55 100.00 100.00 100.00 96.67 100.00 95.65 100.00 100.00 100.00 97.78 95.24 100.00 97.06 100.00 96.55 97.70 91.30 98.39 100.00 95.56 95.24 95.65 100.00 100.00 96.49 100.00 96.00 94.59 100.00 93.33 97.50 92.00 100.00 100.00 K alternative_first_exon sty chr3L - chr3L_3404922_3424424 chr3L_3404922_3416803 chr3L_3424425_3424935 chr3L_3416804_3417927 chr3L_3402799_3404921 99.59 99.65 99.67 99.38 98.98 99.35 99.31 99.71 99.51 100.00 99.53 99.47 99.70 99.79 99.72 99.59 99.43 99.25 99.54 99.73 100.00 98.54 99.76 99.64 100.00 99.64 99.57 100.00 100.00 99.24 98.76 99.16 99.57 99.60 99.61 99.64 99.57 99.48 99.53 99.76 100.00 99.55 99.45 99.52 100.00 100.00 99.32 99.76 99.51 100.00 99.24 99.61 100.00 98.95 99.52 100.00 99.21 100.00 N alternative_first_exon Xrp1 chr3R + chr3R_14744064_14745144;chr3R_14741648_14745144 chr3R_14744348_14745144 chr3R_14740690_14741647 chr3R_14743978_14744347 chr3R_14745145_14745234 45.96 42.98 45.96 40.89 34.52 44.91 50.91 43.81 38.25 41.71 43.62 41.61 42.91 43.07 43.25 48.78 39.11 40.10 40.58 41.89 39.61 49.59 50.00 48.97 55.00 42.38 54.69 52.37 56.99 47.32 48.85 55.37 39.80 41.37 46.82 58.64 44.69 48.58 42.59 46.85 47.90 41.34 38.31 50.37 48.19 48.08 46.67 45.05 45.51 50.00 52.50 54.21 52.21 45.29 43.47 55.75 68.25 51.72 N alternative_first_exon aop chr2L - chr2L_2160583_2160921,chr2L_2160583_2161009,chr2L_2160583_2161012,chr2L_2160583_2161164;chr2L_2160583_2177846 chr2L_2160583_2161232 chr2L_2177847_2178749 chr2L_2161233_2161522 chr2L_2159312_2160582 28.00 29.29 28.12 21.33 26.39 25.26 27.07 22.09 27.31 28.00 23.94 25.40 25.00 26.55 29.31 25.00 24.74 23.81 23.02 24.15 30.26 39.68 28.29 25.23 36.59 21.84 31.15 55.74 33.98 31.50 27.36 36.21 26.58 25.13 23.53 28.83 31.06 29.07 28.69 29.03 30.34 27.45 26.09 21.64 38.16 28.00 30.99 26.90 26.00 31.58 32.86 31.03 43.14 34.78 25.93 32.39 46.94 32.58 K alternative_first_exon Hrb27C chr2L + chr2L_6920862_6922734;chr2L_6921799_6922734 chr2L_6921441_6922734 chr2L_6920693_6920861;chr2L_6921666_6921798 chr2L_6921286_6921440 chr2L_6922735_6922826 10.00 NA NA 11.11 NA NA NA 0.00 7.69 NA NA 37.50 NA 0.00 NA 10.00 14.29 NA 12.50 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 25.00 NA NA NA NA NA 14.29 NA NA NA K alternative_first_exon rempA chr2L - chr2L_558542_559562 chr2L_558542_558615 chr2L_559563_560310 chr2L_558616_559079 chr2L_557943_558541 3.92 3.00 5.35 3.98 5.59 4.27 6.99 6.40 7.59 3.92 3.42 5.90 7.29 5.45 4.30 7.91 7.63 4.76 8.15 3.75 3.75 2.52 3.94 3.19 3.79 4.65 4.11 1.44 1.89 2.80 7.07 1.56 2.35 6.57 3.35 5.15 2.00 2.61 2.56 2.89 2.16 6.14 7.62 3.16 1.05 2.66 1.79 5.50 6.34 1.58 4.85 4.02 1.60 1.11 6.25 2.13 1.47 1.70 K alternative_first_exon pum chr3R - chr3R_5060387_5063338,chr3R_5060387_5063336 chr3R_5060387_5062531 chr3R_5063339_5063417 chr3R_5062532_5062743 chr3R_5059251_5060386 73.08 NA NA 76.92 NA NA 83.33 88.89 62.50 NA NA 66.67 83.33 NA NA 46.15 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 80.00 NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA 69.23 NA NA NA NA NA NA NA NA NA K alternative_first_exon Ald chr3R - chr3R_22083764_22086879;chr3R_22083764_22087057;chr3R_22083764_22085523;chr3R_22083764_22084708 chr3R_22083764_22086875 chr3R_22087058_22087313;chr3R_22085524_22085554;chr3R_22084709_22084996 chr3R_22086876_22087046 chr3R_22082947_22083763 1.31 1.90 1.06 1.23 0.96 1.51 1.87 1.10 1.13 0.94 1.56 1.45 1.70 1.62 1.89 2.33 2.75 0.83 2.39 1.38 1.85 0.42 1.63 1.23 1.20 0.43 1.31 0.92 1.16 1.14 1.45 0.30 0.24 1.45 1.49 1.98 1.13 0.45 1.33 1.38 0.88 1.22 1.12 0.26 0.20 0.85 1.56 0.76 2.20 1.91 1.73 1.86 2.11 2.44 0.99 1.14 1.85 0.33 N alternative_first_exon Moe chrX - chrX_8774434_8774689,chrX_8774434_8775292,chrX_8774434_8775660,chrX_8774434_8775874;chrX_8774434_8792216;chrX_8774434_8788091;chrX_8774434_8791943,chrX_8774434_8791871 chrX_8774434_8785766,chrX_8774434_8785594 chrX_8792217_8792343;chrX_8788092_8788228;chrX_8791944_8792031 chrX_8785767_8785834 chrX_8774325_8774433 93.29 91.67 92.17 92.07 93.41 91.52 93.85 92.60 94.31 96.99 94.95 92.28 91.17 92.59 93.81 88.50 93.60 94.14 92.05 93.57 94.34 90.66 91.00 90.75 95.08 93.34 89.91 92.23 93.84 93.98 90.09 94.25 96.79 93.29 93.81 90.43 94.39 92.31 92.69 92.91 95.66 93.56 92.87 91.63 95.48 93.61 88.89 94.86 93.12 90.91 91.13 93.64 92.25 88.89 94.76 93.37 94.96 95.53 K alternative_first_exon Pfrx chrX + chrX_19400275_19400515,chrX_19400112_19400515;chrX_19392914_19400515;chrX_19390821_19400515;chrX_19400271_19400515 chrX_19398571_19400515 chrX_19392406_19392913;chrX_19390713_19390820;chrX_19399962_19400270 chrX_19398456_19398570 chrX_19400516_19402937 0.00 0.00 0.00 0.00 10.00 10.00 0.00 0.00 5.88 9.09 0.00 0.00 14.29 11.11 10.00 0.00 14.29 0.00 10.00 8.33 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 6.67 0.00 5.88 0.00 0.00 0.00 0.00 0.00 10.00 5.56 0.00 9.09 0.00 11.11 NA 8.33 0.00 0.00 0.00 K alternative_first_exon Indy chr3L - chr3L_18825085_18839135 chr3L_18825085_18833472,chr3L_18825085_18833375 chr3L_18839136_18839360 chr3L_18833473_18833602 chr3L_18825047_18825084 65.35 59.04 77.45 68.21 77.63 75.31 57.75 67.81 65.24 49.23 67.05 64.20 86.52 69.79 75.93 67.66 69.66 77.38 70.09 75.12 65.17 47.62 61.90 66.67 57.14 71.83 58.97 26.92 33.33 50.51 66.67 50.00 30.37 60.67 50.91 38.96 67.86 67.14 73.42 42.42 42.47 73.89 68.83 50.00 47.06 46.24 63.33 37.60 76.35 70.69 70.25 61.73 75.00 58.97 71.57 64.52 65.38 65.35 K alternative_first_exon Idh chr3L - chr3L_8351036_8353892;chr3L_8351036_8351655 chr3L_8351036_8351115 chr3L_8353893_8354031;chr3L_8351656_8352179 chr3L_8351116_8351225 chr3L_8349503_8351035 46.43 NA NA NA NA NA 33.33 NA NA 11.11 NA 57.14 NA NA NA NA NA NA NA 50.00 NA 42.86 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA K alternative_first_exon CG13551 chr2R - chr2R_19270646_19270887 chr2R_19270646_19270842 chr2R_19270888_19270944 chr2R_19270843_19270871 chr2R_19270612_19270645 16.58 12.27 15.45 20.20 10.38 13.45 14.94 16.67 10.41 8.70 8.16 15.38 14.49 16.09 13.48 13.01 8.16 17.65 13.33 20.11 10.32 29.41 38.78 37.84 31.25 15.46 40.00 NA 23.53 47.37 14.01 18.42 11.11 9.43 27.78 31.82 27.40 12.00 25.64 47.27 23.81 16.49 10.61 24.42 17.89 27.91 39.34 10.53 9.39 24.44 33.33 27.59 27.59 32.65 11.81 15.66 21.28 8.93 K alternative_first_exon CG12163,CG33293 chr3R - chr3R_1065342_1065410,chr3R_1065342_1077139;chr3R_1065342_1077145 chr3R_1065342_1069559 chr3R_1077146_1077468 chr3R_1069560_1069976 chr3R_1065214_1065341 3.28 2.93 3.40 0.78 3.12 4.47 2.68 1.89 2.77 7.37 2.16 7.23 5.21 2.86 2.87 1.20 3.32 2.17 1.62 2.85 3.28 2.46 4.49 3.97 3.23 2.41 3.28 3.19 2.41 3.06 3.03 4.23 2.93 2.87 4.41 12.03 3.53 3.39 4.61 6.20 4.26 2.71 3.33 2.61 3.19 3.54 4.34 3.33 2.64 4.03 4.47 3.57 3.63 5.88 2.31 4.97 3.51 2.16 K alternative_first_exon CG18135,CG3808 chr3L - chr3L_18985826_18986825;chr3L_18985826_18988530 chr3L_18985826_18991100 chr3L_18986826_18987093;chr3L_18988531_18988907 chr3L_18991101_18991383 chr3L_18983122_18985825 48.57 57.14 57.14 68.75 66.67 45.45 30.77 71.43 42.42 33.33 55.56 41.67 46.15 45.45 50.00 45.00 50.00 62.50 60.00 57.69 62.50 27.78 44.83 47.62 33.33 63.64 47.37 60.00 47.62 31.25 66.67 50.00 31.82 47.62 45.45 25.71 45.45 43.75 42.86 33.33 64.71 45.83 50.00 45.00 69.23 63.16 61.11 33.33 48.57 57.89 41.38 42.86 55.56 60.00 50.00 63.64 70.37 54.29 K alternative_first_exon CaMKI chr4 + chr4_466377_467256,chr4_466896_467256,chr4_466816_467256,chr4_466912_467256;chr4_466592_467256;chr4_466798_467256,chr4_466858_467256 chr4_467113_467256 chr4_466146_466591;chr4_466794_466797 chr4_466952_467112 chr4_467257_467272 55.05 NA NA 44.44 NA NA 54.55 55.56 69.23 NA NA 54.55 NA NA NA 69.23 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon kay chr3R + chr3R_25607566_25617114,chr3R_25607413_25617114,chr3R_25617044_25617114,chr3R_25615618_25617114,chr3R_25616711_25617114,chr3R_25593310_25617114,chr3R_25616533_25617114;chr3R_25599544_25617114;chr3R_25608870_25617114 chr3R_25616577_25617114 chr3R_25598616_25599543;chr3R_25608333_25608869 chr3R_25614658_25616576 chr3R_25617115_25617442 5.67 5.06 6.64 7.58 5.50 5.67 8.15 6.94 6.21 4.52 5.84 8.33 10.22 6.51 5.65 7.25 7.06 5.89 6.33 8.78 5.12 7.21 5.14 4.89 5.70 7.24 7.13 12.82 6.67 4.35 4.97 3.96 3.77 6.58 4.95 9.43 5.52 4.63 5.82 4.77 3.87 6.32 6.31 4.29 4.49 3.80 5.38 3.57 5.94 4.27 4.74 3.88 6.25 4.32 5.22 4.21 8.76 3.98 K alternative_first_exon PNUTS chr2L + chr2L_870553_871340 chr2L_871275_871340 chr2L_870464_870552 chr2L_871096_871274 chr2L_871341_871576 40.74 29.03 65.00 41.94 35.29 44.44 43.24 43.08 33.00 29.63 42.11 49.15 47.50 50.00 52.17 58.00 42.86 43.75 53.12 56.41 42.86 38.24 31.15 31.58 40.74 45.83 34.29 39.13 37.93 20.93 57.14 45.45 19.44 44.64 40.74 35.71 25.42 23.68 29.63 36.11 47.06 44.07 41.38 25.00 33.33 38.46 21.88 32.14 47.54 38.46 42.22 42.42 30.77 33.33 48.39 34.48 35.29 23.33 K alternative_first_exon ImpL2 chr3L - chr3L_4225707_4225972,chr3L_4225707_4226245,chr3L_4225707_4226564;chr3L_4225707_4226573;chr3L_4225707_4235902 chr3L_4225707_4225883 chr3L_4226574_4227270;chr3L_4235903_4236147 chr3L_4225884_4225950 chr3L_4224927_4225706 1.25 1.34 0.96 0.51 1.51 0.92 1.61 1.31 1.60 0.71 1.15 1.48 0.99 1.54 0.83 0.95 1.44 0.42 0.92 1.25 1.06 1.81 1.17 1.60 1.29 1.55 1.59 1.13 2.45 1.29 0.74 1.45 0.80 1.15 0.61 1.02 1.69 1.33 1.45 0.60 1.46 1.56 1.17 0.74 0.70 1.05 1.96 1.05 0.75 2.13 1.37 1.36 1.03 1.30 0.84 1.59 1.69 1.14 K alternative_first_exon CG7816 chr3R - chr3R_25691122_25692883;chr3R_25691122_25693465;chr3R_25691122_25692901;chr3R_25691122_25694365,chr3R_25691122_25694254;chr3R_25691122_25693711 chr3R_25691122_25691822 chr3R_25693466_25693539;chr3R_25692902_25692936;chr3R_25694366_25694618;chr3R_25693712_25693793 chr3R_25691823_25691898 chr3R_25690779_25691121 0.00 0.00 0.00 0.00 0.00 0.00 0.32 0.00 0.38 0.00 0.00 0.27 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.44 0.55 0.00 0.34 0.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.72 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.62 0.00 0.00 K alternative_first_exon Sema-1b chr2R - chr2R_13566288_13566648;chr2R_13566288_13566564;chr2R_13566288_13570399 chr2R_13566288_13570897 chr2R_13566565_13566747;chr2R_13570400_13570499 chr2R_13570898_13571000 chr2R_13565777_13566287 41.35 46.15 40.74 37.29 45.45 51.72 36.67 36.36 41.67 70.00 47.06 37.50 41.94 41.86 37.04 38.98 41.03 47.06 42.55 23.26 35.29 34.38 37.50 75.00 64.29 40.00 42.86 50.00 30.77 33.33 46.34 NA 43.75 44.44 36.36 30.43 63.64 NA 27.27 45.16 40.00 35.71 40.62 45.45 NA 40.00 NA 42.42 34.92 NA 48.48 61.90 NA NA 36.11 55.56 0.00 41.67 K alternative_first_exon gro chr3R + chr3R_21868657_21868716,chr3R_21868266_21868716,chr3R_21868622_21868716;chr3R_21867624_21868716;chr3R_21867907_21868716,chr3R_21867987_21868716;chr3R_21868535_21868716 chr3R_21868626_21868716 chr3R_21867432_21867623;chr3R_21867852_21867906;chr3R_21868363_21868534 chr3R_21868542_21868625 chr3R_21868717_21869101 7.55 5.88 7.46 4.21 8.33 5.56 8.86 4.65 7.91 7.69 4.76 7.56 5.66 7.46 6.76 8.74 7.55 11.11 5.80 6.21 7.55 15.52 6.50 8.24 6.25 5.17 13.33 17.50 7.14 13.04 8.33 9.26 5.95 4.55 8.47 9.59 8.00 8.20 10.29 9.93 5.00 6.02 4.00 10.45 9.62 5.36 7.46 1.94 5.00 9.09 7.92 6.25 8.00 7.84 3.75 9.62 12.73 4.55 K alternative_first_exon CG4822 chr2L - chr2L_120081_120199;chr2L_120081_120420;chr2L_120081_120167 chr2L_120081_121632 chr2L_120421_120742;chr2L_120168_120364 chr2L_121633_121751 chr2L_119828_120080 6.10 6.90 3.03 6.14 6.82 3.57 2.75 5.97 3.92 10.71 12.20 5.26 5.13 8.70 5.81 3.27 5.26 6.78 4.30 8.27 12.00 5.45 7.78 8.96 5.26 3.57 4.76 17.50 5.88 9.46 5.33 2.94 7.84 5.47 3.45 7.46 9.62 7.84 3.45 6.67 5.13 6.87 3.33 6.58 10.81 6.85 8.93 6.10 4.38 5.66 5.06 8.62 13.79 12.12 4.82 4.65 10.87 12.28 K alternative_first_exon sina chr3L + chr3L_16848765_16849396,chr3L_16847053_16849396;chr3L_16847626_16849396 chr3L_16849085_16849396 chr3L_16845845_16847625 chr3L_16849019_16849084 chr3L_16849397_16852050 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon CG42748 chr2L + chr2L_22135108_22140718 chr2L_22140364_22140718 chr2L_22134351_22135107 chr2L_22140123_22140363 chr2L_22140719_22140971 15.38 11.11 16.67 10.53 20.00 25.00 10.53 13.64 9.38 0.00 25.00 15.79 16.67 20.00 30.00 8.33 10.00 16.67 15.38 13.04 28.57 25.00 18.18 25.00 12.50 40.00 15.38 9.09 16.67 12.50 9.09 0.00 20.00 17.39 18.18 18.18 8.33 12.50 22.22 11.11 0.00 15.79 11.11 18.18 0.00 0.00 20.00 12.50 16.67 9.09 14.29 11.11 16.67 16.67 15.38 12.50 18.18 10.00 K alternative_first_exon Hrb98DE chr3R + chr3R_24425722_24426439 chr3R_24426291_24426439 chr3R_24425529_24425721 chr3R_24426109_24426290 chr3R_24426440_24426917 63.64 61.40 64.41 68.25 63.64 66.67 67.06 62.50 66.81 53.85 68.00 63.39 68.24 60.78 58.65 57.14 61.36 58.67 54.12 67.30 42.86 67.84 69.08 64.22 71.08 65.15 74.05 73.74 58.00 61.63 56.41 52.04 47.17 59.73 69.89 63.64 57.25 67.47 69.85 61.26 55.71 63.87 62.50 72.81 53.09 51.88 68.18 43.33 64.62 62.61 65.56 62.16 69.33 70.59 61.40 66.06 68.27 43.45 N alternative_first_exon chb chr3L + chr3L_21170546_21171196;chr3L_21171043_21171196;chr3L_21169629_21171196 chr3L_21166146_21171196 chr3L_21170961_21171042;chr3L_21168900_21169628 chr3L_21165953_21166145 chr3L_21171197_21176378 1.14 2.27 2.27 2.90 0.00 2.50 1.54 2.38 1.85 2.27 2.44 1.10 0.00 0.00 1.92 1.45 2.38 0.00 3.57 1.12 0.00 0.00 0.00 1.82 0.00 2.08 0.00 2.27 2.04 0.00 3.85 0.00 0.00 1.14 0.00 2.00 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 2.17 3.70 1.69 0.00 0.00 4.76 1.67 3.45 3.03 1.69 K alternative_first_exon Pde8 chr2R + chr2R_19556891_19559498;chr2R_19553559_19559498 chr2R_19557901_19559498 chr2R_19556630_19556890;chr2R_19553474_19553558 chr2R_19557425_19557900 chr2R_19559499_19559611 9.19 8.16 5.38 9.76 9.52 5.49 6.74 8.26 10.73 22.95 9.43 9.88 7.55 7.32 11.24 8.75 12.50 7.25 6.41 7.65 8.77 11.04 15.82 10.85 10.53 7.89 10.20 20.00 11.24 10.08 7.83 7.46 14.29 10.57 10.26 10.69 10.30 10.91 9.19 5.96 8.60 9.24 8.62 13.73 6.20 10.81 7.00 15.03 8.75 12.07 8.84 8.70 7.61 9.33 8.25 6.98 5.49 8.55 K alternative_first_exon CG42669 chr3L + chr3L_2461269_2463056 chr3L_2462985_2463056 chr3L_2460978_2461268 chr3L_2462861_2462984 chr3L_2463057_2464572 38.38 40.00 44.59 33.33 41.67 40.32 47.31 54.78 47.59 25.45 47.92 51.22 61.64 53.33 56.82 60.87 49.06 35.71 55.70 45.90 45.28 18.40 28.21 32.43 23.29 50.00 29.81 12.96 26.92 26.44 36.36 26.23 22.22 50.53 26.98 39.82 26.76 27.71 26.87 37.59 26.76 43.97 53.70 40.16 35.05 38.38 35.80 31.17 52.59 37.67 31.86 34.04 33.00 38.54 53.33 38.78 39.78 28.24 K alternative_first_exon ps chr3R + chr3R_5257591_5257750;chr3R_5245770_5257750;chr3R_5254375_5257750 chr3R_5243723_5257750 chr3R_5245317_5245769;chr3R_5254284_5254374 chr3R_5243664_5243722 chr3R_5257751_5258561 11.11 6.45 8.33 11.46 15.62 15.62 7.92 13.79 12.59 34.78 2.44 9.52 16.67 12.50 10.20 7.07 10.00 14.89 12.28 19.20 10.64 12.24 5.88 13.51 7.89 13.95 4.35 4.00 7.41 12.82 11.36 11.11 21.43 13.08 5.56 4.55 8.47 14.29 8.57 4.65 10.00 11.83 13.33 8.20 27.27 5.88 12.00 7.14 11.82 4.76 3.77 12.90 14.29 21.43 14.81 8.33 0.00 7.69 K alternative_first_exon Nmdmc,Rel chr3R - chr3R_4869362_4876085 chr3R_4869362_4874878 chr3R_4876086_4876271 chr3R_4874879_4874969 chr3R_4868574_4869361 90.77 92.59 93.33 92.31 93.75 90.00 79.41 88.57 89.19 100.00 86.67 85.71 82.35 95.00 92.00 92.86 87.50 88.24 92.31 90.24 85.00 97.37 90.62 92.59 87.50 80.95 87.18 95.00 100.00 87.50 90.91 94.12 90.91 86.67 89.47 86.96 88.89 85.71 97.06 97.50 83.33 89.47 78.57 88.64 92.59 94.44 94.44 NA 92.68 97.62 82.93 88.24 100.00 92.86 95.65 88.89 98.63 100.00 N alternative_first_exon par-1 chr2R + chr2R_15355419_15356294,chr2R_15355073_15356294;chr2R_15353200_15356294;chr2R_15355147_15356294 chr2R_15348122_15356294 chr2R_15351815_15353199;chr2R_15355019_15355146 chr2R_15347300_15348121 chr2R_15356295_15357843 19.05 7.14 25.00 10.53 38.89 6.67 8.33 5.56 16.67 35.00 33.33 20.00 7.69 13.64 10.53 8.33 15.00 9.09 15.00 10.81 16.67 23.08 12.12 25.00 42.86 37.50 35.00 14.29 19.05 12.00 14.71 22.22 52.70 3.45 29.63 35.85 45.00 27.78 26.67 28.57 33.33 30.56 17.65 14.29 31.25 22.22 11.11 35.48 15.00 13.33 10.00 22.22 26.67 33.33 4.76 9.09 40.00 42.86 K alternative_first_exon Ama chr3R + chr3R_2588719_2589554 chr3R_2589223_2589554,chr3R_2589239_2589554 chr3R_2588315_2588718 chr3R_2589128_2589222 chr3R_2589555_2590983 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA 100.00 100.00 NA NA NA 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 NA 100.00 100.00 NA NA NA NA NA 100.00 NA NA NA K alternative_first_exon ago chr3L - chr3L_4251841_4251981;chr3L_4251841_4254127 chr3L_4251841_4253988 chr3L_4251982_4252119;chr3L_4254128_4254309 chr3L_4253989_4254052 chr3L_4248724_4251840 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 2.08 0.00 0.00 0.00 K alternative_first_exon tws chr3R - chr3R_5959310_5959789,chr3R_5959310_5960041,chr3R_5959310_5960049,chr3R_5959310_5960182;chr3R_5959310_5960163,chr3R_5959310_5960158,chr3R_5959310_5960101,chr3R_5959310_5960026 chr3R_5959310_5959679 chr3R_5960164_5960224 chr3R_5959680_5959869 chr3R_5958937_5959309 16.67 15.38 25.00 14.29 15.38 19.05 16.67 19.05 17.19 21.43 20.00 20.83 26.47 12.90 17.24 16.92 14.29 16.67 20.00 11.76 11.11 16.67 12.50 11.76 25.00 8.70 16.67 14.29 15.79 10.53 16.67 18.18 20.00 20.00 15.00 20.00 NA NA 18.18 14.29 0.00 18.87 23.53 7.69 15.38 15.00 10.00 18.18 20.00 26.67 9.09 26.67 NA NA 19.23 17.65 NA 14.29 K alternative_first_exon Cerk chr3R - chr3R_1187483_1187824,chr3R_1187483_1193578;chr3R_1187483_1193642 chr3R_1187483_1187753 chr3R_1193643_1194027 chr3R_1187754_1187788 chr3R_1185701_1187482 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon CG1275 chr3L - chr3L_2253987_2255538;chr3L_2253987_2256605 chr3L_2253987_2257111 chr3L_2255539_2256011;chr3L_2256606_2256758 chr3L_2257112_2257409 chr3L_2253777_2253986 93.33 95.19 95.56 94.49 93.33 94.55 95.70 95.36 95.77 90.62 96.10 94.40 97.40 97.06 96.50 97.05 94.21 96.12 95.96 94.35 93.75 86.36 89.89 92.68 88.89 95.12 94.68 75.00 85.37 88.64 90.85 94.12 87.88 95.49 88.31 86.44 91.38 93.88 91.03 88.60 90.00 93.52 96.55 89.80 90.74 92.05 92.75 81.82 96.60 88.76 91.21 91.07 89.86 91.94 94.16 93.51 88.03 88.12 K alternative_first_exon CG3967 chr3L - chr3L_9412372_9415965;chr3L_9412372_9413187;chr3L_9412372_9412996 chr3L_9412372_9419322 chr3L_9413188_9413272;chr3L_9412997_9413032 chr3L_9419323_9419777 chr3L_9412195_9412371 100.00 93.75 100.00 96.43 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 94.44 100.00 100.00 100.00 94.74 97.30 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_first_exon rdx chr3R - chr3R_9796825_9796989;chr3R_9796825_9807355;chr3R_9796825_9852599 chr3R_9796825_9849367 chr3R_9796990_9797520;chr3R_9807356_9809083;chr3R_9852600_9852666 chr3R_9849368_9849616 chr3R_9796674_9796824 21.43 22.50 24.24 21.43 18.52 21.43 16.00 25.93 24.36 21.43 27.59 20.29 25.93 30.30 20.51 27.12 24.00 20.00 33.33 23.38 24.00 9.59 21.43 24.14 16.67 21.43 16.33 9.52 11.86 17.50 24.24 10.00 8.00 25.00 16.67 18.18 13.85 26.67 16.07 19.48 16.00 23.33 27.59 16.67 12.50 21.88 23.33 15.69 23.29 14.71 23.33 24.00 16.67 20.00 15.79 18.92 14.29 23.33 K alternative_first_exon HmgZ chr2R - chr2R_17586106_17590177;chr2R_17586106_17591827 chr2R_17586106_17590181 chr2R_17591828_17591993 chr2R_17590182_17590413 chr2R_17585893_17586105 68.54 66.67 64.81 64.11 64.91 66.10 65.52 62.05 64.31 72.62 74.49 63.14 58.57 64.67 62.50 56.92 61.65 68.05 62.23 68.54 70.54 81.45 69.05 69.62 71.95 65.19 63.56 76.81 74.49 74.74 66.84 71.43 78.26 62.85 68.42 72.03 70.97 69.07 77.12 79.26 77.66 66.21 60.99 69.05 75.00 71.60 73.64 75.56 62.50 59.63 66.67 70.37 74.26 69.81 69.11 64.63 66.87 72.96 N alternative_first_exon par-1 chr2R + chr2R_15355419_15356294,chr2R_15355073_15356294;chr2R_15348122_15356294;chr2R_15355147_15356294 chr2R_15353200_15356294 chr2R_15347300_15348121;chr2R_15355019_15355146 chr2R_15351815_15353199 chr2R_15356295_15357843 5.00 7.14 6.25 5.26 5.56 6.67 4.17 5.56 2.08 5.00 8.33 2.86 7.69 4.55 5.26 2.78 5.00 9.09 5.00 2.70 8.33 2.56 3.03 5.00 4.76 4.17 5.00 9.52 4.76 4.00 2.94 11.11 2.70 3.45 3.70 32.08 5.00 5.56 6.67 3.57 4.17 2.78 5.88 4.76 6.25 5.56 5.56 3.23 2.50 6.67 3.33 5.56 6.67 11.11 4.76 9.09 6.67 4.76 K alternative_first_exon E2f chr3R - chr3R_17452573_17458645,chr3R_17452573_17463474;chr3R_17452573_17471237 chr3R_17452573_17457854 chr3R_17471238_17471265 chr3R_17457855_17458744 chr3R_17452414_17452572 82.69 84.15 88.37 81.44 77.05 84.42 86.11 82.50 81.41 97.44 90.12 86.98 86.79 79.13 83.33 85.56 84.38 82.56 78.36 80.00 86.59 65.43 81.20 88.31 89.47 82.35 81.08 77.55 87.21 72.83 84.91 85.71 78.63 81.63 81.71 92.77 88.89 80.77 83.64 88.00 79.55 86.77 88.30 88.73 83.93 78.95 80.77 85.47 79.91 85.37 82.00 80.30 81.58 76.00 84.62 82.69 78.57 80.20 K alternative_first_exon CG4199 chrX - chrX_1965614_1966582;chrX_1965614_1965872;chrX_1965614_1967409,chrX_1965614_1967149 chrX_1965614_1965671 chrX_1965873_1966096;chrX_1967410_1967460 chrX_1965672_1965832 chrX_1965393_1965613 6.23 3.42 4.44 7.58 3.12 2.33 8.22 7.56 6.39 7.06 4.65 3.54 9.17 7.02 5.38 6.57 7.87 5.63 6.78 6.23 4.12 27.74 4.91 5.85 6.03 5.34 4.98 7.93 12.17 6.25 6.21 9.52 7.29 7.11 5.88 4.11 4.44 3.87 4.09 6.38 11.97 6.99 6.74 6.99 5.26 6.63 7.06 6.32 7.09 3.80 6.03 5.30 4.46 5.22 4.38 3.36 7.26 10.19 K alternative_first_exon alt chr3R - chr3R_13503901_13504925,chr3R_13503901_13505368;chr3R_13503901_13507816;chr3R_13503901_13508180,chr3R_13503901_13508178,chr3R_13503901_13508123;chr3R_13503901_13504373 chr3R_13503901_13504865 chr3R_13507817_13507965;chr3R_13508181_13508234;chr3R_13504374_13504425 chr3R_13504866_13505009 chr3R_13502559_13503900 26.00 25.64 19.05 27.27 16.67 27.78 26.03 35.00 29.68 25.00 19.57 25.96 31.25 34.78 23.19 41.44 29.09 22.73 33.33 21.74 23.53 26.32 20.69 23.81 30.00 17.33 19.23 32.00 23.53 13.04 27.08 21.43 9.09 28.32 31.25 20.00 10.00 11.11 18.18 25.00 28.57 19.61 29.31 31.58 11.76 26.67 27.78 41.18 29.30 16.00 37.04 35.00 33.33 NA 20.29 15.38 48.57 51.52 K alternative_first_exon eIF-4a chr2L + chr2L_5981836_5983009 chr2L_5982822_5983009 chr2L_5981759_5981835 chr2L_5982524_5982821 chr2L_5983010_5983236 14.01 19.88 7.91 7.06 7.97 7.94 8.56 8.37 7.77 14.01 6.18 8.36 6.17 9.00 8.08 8.33 8.64 6.49 8.32 5.37 7.75 29.51 31.08 20.53 13.62 10.54 28.16 43.44 16.83 36.74 14.08 18.63 18.61 9.03 48.38 45.57 14.12 21.16 13.68 31.66 21.20 9.76 9.24 42.25 10.40 35.49 20.21 14.36 7.83 25.45 32.55 19.04 17.50 54.82 9.93 19.37 18.95 8.95 K alternative_first_exon CG8709,kermit chr2R - chr2R_4035901_4036531;chr2R_4035901_4036812;chr2R_4035901_4043918,chr2R_4035901_4043559 chr2R_4035901_4036432 chr2R_4036813_4036924;chr2R_4043919_4044126 chr2R_4036433_4036503 chr2R_4034423_4035900 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon CG42231,chif chr2L - chr2L_16343305_16351926 chr2L_16343305_16344425 chr2L_16351927_16352600 chr2L_16344426_16349472 chr2L_16342822_16343304 75.00 72.13 74.63 56.56 67.92 70.69 45.37 59.52 69.59 84.09 66.67 69.09 82.22 66.67 71.01 82.14 80.77 81.97 73.24 79.07 76.09 68.60 81.82 75.00 84.44 64.62 69.62 72.34 90.00 83.10 68.67 80.85 85.57 78.18 75.38 75.44 75.90 78.72 84.51 79.67 71.19 68.06 75.93 77.63 62.50 73.49 65.00 91.18 73.13 67.86 76.67 75.00 84.78 67.39 77.50 69.09 61.82 83.72 K alternative_first_exon gfzf chr3R - chr3R_2972815_2973399 chr3R_2972815_2973052 chr3R_2973400_2975354 chr3R_2973053_2973097 chr3R_2972667_2972814 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 1.09 1.15 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon stck chr3R + chr3R_4182496_4184192;chr3R_4183179_4184192;chr3R_4184127_4184192 chr3R_4182818_4184192 chr3R_4183057_4183178;chr3R_4184058_4184126 chr3R_4182689_4182817 chr3R_4184193_4184312 13.16 13.04 16.28 16.67 12.20 7.50 19.05 13.43 15.93 21.74 13.16 17.28 29.63 17.14 18.60 18.18 17.50 6.52 11.36 10.34 10.00 4.69 13.79 15.56 19.35 18.37 8.51 14.29 13.89 6.90 11.76 7.69 13.79 13.51 9.38 3.23 15.79 20.00 11.11 9.52 14.29 15.62 10.26 7.81 11.76 15.22 10.20 4.17 12.22 20.75 8.51 20.00 8.70 8.89 19.67 12.07 9.89 12.12 K alternative_first_exon CG12360 chr3R - chr3R_8854607_8856135 chr3R_8854607_8855640 chr3R_8856136_8856372 chr3R_8855641_8855876 chr3R_8853927_8854606 100.00 100.00 97.73 92.45 100.00 100.00 98.00 100.00 97.33 100.00 96.77 100.00 100.00 100.00 100.00 95.83 100.00 100.00 97.14 100.00 100.00 100.00 100.00 100.00 100.00 97.56 100.00 100.00 95.45 100.00 100.00 100.00 98.28 98.21 100.00 97.22 100.00 100.00 98.11 100.00 100.00 97.26 100.00 100.00 100.00 97.22 100.00 98.28 100.00 100.00 100.00 96.55 100.00 96.30 100.00 100.00 100.00 100.00 K alternative_first_exon Syx6 chr2R + chr2R_7107218_7107968 chr2R_7107864_7107968 chr2R_7107046_7107217 chr2R_7107441_7107863 chr2R_7107969_7108126 8.01 0.00 14.29 7.69 0.00 NA 12.50 10.00 5.56 NA 9.09 9.09 0.00 0.00 NA 0.00 14.29 14.29 NA 7.14 0.00 9.09 6.67 7.69 12.50 14.29 6.67 25.00 25.00 NA 0.00 NA NA 0.00 0.00 12.50 0.00 0.00 NA 7.14 NA 10.00 NA 11.11 NA 0.00 11.11 NA 7.69 14.29 8.33 12.50 0.00 0.00 12.50 10.00 9.09 NA K alternative_first_exon CG18812 chr2R - chr2R_3607502_3609369;chr2R_3607502_3613193 chr2R_3607502_3609538 chr2R_3613194_3613294 chr2R_3609539_3610157 chr2R_3607348_3607501 43.10 38.30 36.67 39.77 32.86 40.00 50.96 37.50 40.45 56.47 32.79 32.67 46.43 43.42 40.40 52.88 47.83 39.24 45.98 36.31 32.84 52.91 38.69 39.05 42.03 30.77 46.30 61.39 64.58 40.43 49.61 43.10 46.72 43.94 49.00 47.31 37.96 34.69 32.00 40.59 45.05 40.24 33.33 55.17 49.48 50.41 49.14 42.20 44.76 54.47 32.59 45.59 46.38 40.62 37.25 45.00 50.94 56.30 K alternative_first_exon bsk chr2L - chr2L_10249260_10249855,chr2L_10249260_10249931,chr2L_10249260_10250123;chr2L_10249260_10250280 chr2L_10249260_10249492 chr2L_10250281_10250479 chr2L_10249493_10249709 chr2L_10249095_10249259 7.14 6.25 7.14 2.63 5.00 10.71 2.90 4.26 3.96 8.33 3.85 5.36 4.35 5.36 6.25 6.12 5.26 4.35 5.88 5.36 8.33 9.52 10.34 12.90 5.56 12.00 11.76 16.67 13.33 4.76 11.43 11.76 10.00 3.85 12.00 4.55 5.26 10.00 7.14 9.38 15.79 6.85 5.56 3.85 14.29 3.57 11.54 15.79 5.00 7.41 11.11 3.85 11.11 17.65 10.26 4.76 9.68 12.90 K alternative_first_exon prominin-like chr3L - chr3L_3121200_3122395,chr3L_3121200_3122592;chr3L_3121200_3127652 chr3L_3121200_3126866 chr3L_3127653_3127723 chr3L_3126867_3127216 chr3L_3120668_3121199 90.59 92.25 86.79 78.54 77.52 79.53 93.18 87.60 82.23 94.16 67.42 91.25 86.15 83.85 76.71 79.12 87.30 87.50 82.50 92.05 77.08 73.72 95.26 95.12 93.57 91.18 91.53 82.46 87.39 91.34 84.38 87.93 90.06 82.38 93.75 96.73 90.57 94.20 94.94 84.51 94.94 87.12 83.52 92.21 96.92 96.63 90.59 93.12 88.38 93.02 94.44 92.17 95.24 94.74 84.52 93.10 90.79 94.87 K alternative_first_exon shep chr3L - chr3L_5212386_5240653;chr3L_5212386_5269254 chr3L_5212386_5264439 chr3L_5240654_5240943;chr3L_5269255_5269463 chr3L_5264440_5266434 chr3L_5212050_5212385 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K alternative_first_exon CG3835 chrX + chrX_2033170_2037024,chrX_2036036_2037024;chrX_2036963_2037024;chrX_2035852_2037024 chrX_2035640_2037024 chrX_2036765_2036962;chrX_2035729_2035851 chrX_2035521_2035639 chrX_2037025_2037281 90.00 91.84 93.88 84.00 86.67 84.21 89.47 88.41 83.13 94.23 83.33 90.00 86.11 80.00 88.89 85.71 85.71 86.36 87.18 90.76 90.00 92.11 91.07 91.67 93.33 84.09 84.62 87.50 95.59 93.85 84.62 91.25 91.53 88.24 92.16 96.61 93.33 92.50 90.48 95.10 88.73 90.41 86.49 92.16 93.33 91.74 92.16 94.90 89.42 85.29 87.32 92.59 95.92 94.12 89.47 89.58 86.96 94.89 K alternative_first_exon Oda chr2R - chr2R_8055709_8061595;chr2R_8055709_8058428 chr2R_8055709_8055927 chr2R_8061596_8061767;chr2R_8058429_8058796 chr2R_8055928_8056069 chr2R_8055499_8055708 0.19 0.00 0.19 0.24 0.27 0.00 0.13 0.18 0.19 0.00 0.00 0.24 0.24 0.19 0.35 0.09 0.23 0.30 0.14 0.20 0.00 0.60 0.71 0.29 0.00 0.00 0.19 0.56 0.00 0.00 0.05 0.00 0.43 0.10 0.36 0.41 0.35 0.00 0.28 0.14 0.43 0.21 0.00 0.19 0.00 0.19 0.00 0.00 0.08 0.34 0.23 0.71 0.74 0.00 0.31 0.36 0.31 0.00 K alternative_first_exon Pk61C chr3L + chr3L_135385_135457,chr3L_129909_135457,chr3L_134082_135457,chr3L_132936_135457,chr3L_131959_135457,chr3L_131934_135457;chr3L_132056_135457,chr3L_132531_135457;chr3L_129889_135457 chr3L_132810_135457 chr3L_131849_132055;chr3L_129452_129888 chr3L_132733_132809 chr3L_135458_135842 0.00 0.00 1.06 0.00 0.00 1.41 1.46 1.64 0.87 0.00 0.00 0.00 1.83 0.00 1.03 1.28 0.00 0.00 3.06 0.53 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 1.05 0.00 0.00 1.79 0.00 0.00 1.23 0.00 0.00 1.75 0.00 0.00 0.95 0.00 0.00 0.00 K alternative_first_exon jp chr2L - chr2L_9550405_9551716 chr2L_9550405_9550478 chr2L_9551717_9553526 chr2L_9550479_9551017 chr2L_9550204_9550404 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA K alternative_first_exon CG2747 chr3R - chr3R_3850792_3856366 chr3R_3850792_3852498 chr3R_3856367_3856505 chr3R_3852499_3852877 chr3R_3850375_3850791 32.00 44.44 20.00 32.43 33.33 28.57 30.30 27.03 27.50 37.50 25.00 26.47 23.53 31.58 33.33 23.68 35.71 23.08 28.00 17.39 25.00 68.00 42.86 33.33 23.08 23.81 43.75 66.67 64.29 45.45 18.52 NA 54.55 35.29 25.00 38.46 42.86 60.00 20.00 45.45 NA 30.56 25.00 69.23 NA 28.57 33.33 50.00 22.22 NA 14.29 41.67 NA NA 31.58 NA 50.00 50.00 K alternative_first_exon hebe chr2R - chr2R_5717365_5717821;chr2R_5717365_5718792;chr2R_5717365_5721013,chr2R_5717365_5720983 chr2R_5717365_5723947 chr2R_5718793_5718834;chr2R_5721014_5721068 chr2R_5723948_5724147 chr2R_5715606_5717364 1.54 2.33 1.92 2.90 0.00 0.00 0.00 1.54 0.90 0.00 0.00 1.56 3.85 2.22 2.00 3.64 2.63 2.70 2.94 1.98 2.70 0.00 4.00 0.00 0.00 0.00 0.00 0.00 4.35 3.12 0.00 1.96 2.13 1.59 0.00 0.00 2.78 0.00 0.00 0.00 0.00 1.04 0.00 3.57 0.00 2.08 2.17 1.82 1.06 0.00 2.78 0.00 0.00 4.00 2.17 3.03 0.00 0.00 K alternative_first_exon CG18815 chr3L + chr3L_11621227_11621442,chr3L_11621237_11621442 chr3L_11621351_11621442 chr3L_11621170_11621226 chr3L_11621317_11621350 chr3L_11621443_11621601 0.86 1.00 1.20 1.34 1.47 1.75 0.67 0.77 0.36 1.92 0.00 0.48 1.08 0.00 2.65 0.83 0.00 0.00 1.01 0.43 0.00 3.70 0.00 1.68 0.00 1.15 1.04 0.00 2.74 1.39 1.14 1.61 1.59 0.00 1.79 4.00 0.69 0.00 0.00 0.82 2.04 0.56 0.00 0.00 1.11 0.88 0.86 0.00 0.58 1.19 0.00 1.08 0.95 1.30 0.00 1.01 0.00 0.00 K alternative_first_exon fd68A chr3L - chr3L_11111166_11112495;chr3L_11111166_11111514;chr3L_11111166_11113709;chr3L_11111166_11113381 chr3L_11111166_11112264 chr3L_11111515_11111566;chr3L_11113710_11113875;chr3L_11113382_11113511 chr3L_11112265_11112519 chr3L_11110405_11111165 0.00 0.00 0.00 2.00 0.00 0.00 2.13 3.28 1.82 0.00 5.88 0.00 0.00 0.00 0.00 1.56 0.00 0.00 2.70 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 2.94 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon lig chr2R + chr2R_3955788_3957375,chr2R_3956442_3957375,chr2R_3956067_3957375;chr2R_3956340_3957375;chr2R_3957318_3957375 chr2R_3955517_3957375,chr2R_3955586_3957375,chr2R_3955872_3957375 chr2R_3956281_3956339;chr2R_3957252_3957317 chr2R_3955486_3955516 chr2R_3957376_3957784 93.47 85.19 97.96 95.65 92.00 97.78 95.35 93.33 94.49 75.00 97.96 92.68 100.00 91.89 96.97 93.02 97.92 93.62 95.56 94.32 95.00 59.46 NA NA NA 90.00 NA NA 84.21 100.00 94.92 82.35 89.80 97.40 78.95 NA 90.00 NA NA 90.70 83.33 96.33 95.35 92.86 95.00 84.62 NA 80.77 94.37 NA NA NA 91.67 NA 94.29 NA NA 82.14 K alternative_first_exon Pino chr2L - chr2L_1117517_1128128 chr2L_1117517_1118565 chr2L_1128129_1128345 chr2L_1118566_1119139 chr2L_1117444_1117516 29.07 29.07 25.00 40.67 30.99 29.41 33.85 33.33 35.44 17.07 35.85 30.56 22.03 39.24 34.09 38.94 40.58 34.92 42.11 30.85 32.81 29.63 27.74 28.32 25.58 27.16 23.19 18.67 22.22 24.00 41.94 22.03 15.60 41.89 30.34 26.32 19.33 20.91 16.56 25.61 27.54 32.95 35.29 36.28 19.74 38.74 28.00 25.86 35.15 33.00 24.60 37.21 19.64 27.94 36.89 26.51 26.58 22.22 K alternative_first_exon csw chrX + chrX_1997809_2002412;chrX_1989430_2002412 chrX_2002328_2002412 chrX_1989303_1989429 chrX_2002282_2002327 chrX_2002413_2002575 0.00 0.00 0.00 0.00 NA 10.00 10.00 7.14 0.00 0.00 NA 0.00 10.00 NA 0.00 0.00 NA NA 0.00 5.26 NA 4.35 6.67 0.00 0.00 0.00 0.00 NA NA 7.14 NA NA NA 0.00 NA NA 0.00 0.00 5.26 0.00 0.00 0.00 NA 0.00 NA NA NA 7.14 0.00 NA 0.00 NA NA NA 0.00 NA NA NA K alternative_first_exon Ack chr3L + chr3L_4104119_4110497 chr3L_4108984_4110497 chr3L_4103567_4104118 chr3L_4108205_4108983 chr3L_4110498_4111639 66.67 72.50 76.67 73.17 84.21 81.48 70.00 75.51 74.03 72.00 80.95 50.60 59.52 72.22 65.79 82.50 80.00 70.37 67.50 52.48 65.38 81.03 60.00 66.67 51.35 68.00 67.27 79.49 34.25 61.70 79.41 64.00 75.47 72.55 83.33 53.49 59.68 65.85 72.55 48.84 45.16 76.47 80.77 41.94 37.78 45.10 55.81 39.53 64.71 80.77 64.29 54.76 38.10 41.94 69.23 66.67 47.06 50.00 K alternative_first_exon Eip63E chr3L + chr3L_3546132_3552786;chr3L_3516829_3552786 chr3L_3543708_3552786 chr3L_3545322_3546131;chr3L_3515685_3516828 chr3L_3543582_3543707 chr3L_3552787_3552864 3.33 3.03 3.23 4.92 3.70 7.14 3.57 0.00 3.33 0.00 3.85 8.33 0.00 5.88 5.41 3.45 0.00 7.14 2.78 2.38 7.14 6.25 3.64 6.67 0.00 4.00 5.13 3.70 4.76 2.50 2.94 0.00 0.00 3.51 0.00 2.78 4.76 5.41 4.76 1.67 0.00 1.45 0.00 2.27 0.00 5.88 7.69 0.00 4.41 9.09 2.13 0.00 3.33 5.56 0.00 0.00 8.33 1.79 K alternative_first_exon shep chr3L - chr3L_5212386_5240653;chr3L_5212386_5264439 chr3L_5212386_5269254 chr3L_5240654_5240943;chr3L_5264440_5266434 chr3L_5269255_5269463 chr3L_5212050_5212385 63.97 77.78 66.67 50.00 66.67 71.43 33.33 33.33 61.11 66.67 75.00 70.00 60.00 57.14 71.43 30.00 55.56 50.00 55.56 50.00 NA 63.16 76.47 61.54 66.67 57.14 72.73 NA 75.00 62.50 66.67 NA 73.33 66.67 62.50 63.64 64.29 72.73 72.73 70.59 55.56 69.57 83.33 75.00 77.78 57.14 71.43 NA 60.00 66.67 50.00 62.50 63.64 NA 50.00 71.43 54.55 61.11 K alternative_first_exon mip120 chr2R + chr2R_9394299_9397293 chr2R_9397233_9397293 chr2R_9393947_9394298 chr2R_9397123_9397232 chr2R_9397294_9398741 6.67 0.00 8.70 3.45 16.67 0.00 19.05 0.00 6.67 22.22 0.00 7.32 0.00 0.00 4.55 15.38 15.38 5.88 10.53 4.26 6.25 10.00 5.56 4.00 6.67 9.09 4.00 37.50 0.00 6.25 10.00 0.00 0.00 10.34 0.00 7.14 9.52 6.90 2.94 6.06 16.67 11.90 7.14 14.29 0.00 0.00 7.69 5.00 12.50 7.14 6.25 0.00 33.33 0.00 15.38 10.53 0.00 13.33 K alternative_first_exon porin chr2L - chr2L_10848864_10850354;chr2L_10848864_10850216;chr2L_10848864_10850753 chr2L_10848864_10849030 chr2L_10850217_10850340;chr2L_10850754_10850868 chr2L_10849031_10849065 chr2L_10848544_10848863 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon milt chr2L + chr2L_7049726_7051366;chr2L_7041160_7051366 chr2L_7050984_7051366 chr2L_7040950_7041159 chr2L_7050226_7050983 chr2L_7051367_7051645 5.26 4.35 5.56 7.81 2.33 2.38 7.81 5.00 5.56 5.88 2.33 4.71 4.35 5.13 8.16 6.15 5.00 4.55 7.14 7.14 4.88 6.06 6.76 4.00 4.17 6.00 7.14 10.29 6.35 6.06 6.90 4.35 7.58 8.33 4.55 7.27 4.17 4.55 4.11 6.85 7.14 6.33 5.13 5.17 3.70 7.69 4.17 7.14 5.81 3.33 4.69 4.44 5.00 0.00 5.26 6.06 5.26 7.69 K alternative_first_exon CG33129 chr2L - chr2L_10966410_10967142;chr2L_10966410_10966501;chr2L_10966410_10968133 chr2L_10966410_10968437 chr2L_10966502_10966672;chr2L_10968134_10968206 chr2L_10968438_10968583 chr2L_10965993_10966409 35.33 35.83 43.65 42.79 34.78 35.71 43.04 40.20 33.33 26.19 32.73 29.51 31.53 38.26 34.29 40.33 42.11 33.61 38.36 34.46 29.60 30.30 31.12 42.55 43.18 41.04 49.09 26.89 29.91 33.61 41.36 38.18 45.83 40.89 39.02 37.76 32.94 30.08 45.71 49.64 37.37 38.37 34.21 32.85 36.28 31.74 35.33 31.18 34.22 41.91 40.16 34.65 23.53 35.24 40.36 34.27 26.47 24.56 K alternative_first_exon Rox8 chr3R - chr3R_19872214_19872659,chr3R_19872214_19872663,chr3R_19872214_19872909,chr3R_19872214_19873136,chr3R_19872214_19873214,chr3R_19872214_19873220,chr3R_19872214_19873550;chr3R_19872214_19873834;chr3R_19872214_19873682 chr3R_19872214_19873540 chr3R_19873835_19873987;chr3R_19873683_19873748 chr3R_19873541_19873678 chr3R_19871160_19872213 56.91 57.14 54.29 48.89 27.78 56.52 66.67 32.50 43.86 75.00 53.85 43.75 40.74 61.54 54.29 47.37 39.29 47.37 45.95 44.90 57.69 77.78 72.97 60.00 53.85 48.15 69.23 30.77 64.00 61.11 50.00 57.14 54.17 44.44 65.22 80.65 47.06 53.85 68.42 NA 75.00 48.33 41.67 61.11 66.67 59.09 60.00 58.06 45.31 57.89 57.14 66.67 70.59 60.00 44.44 66.67 60.00 56.67 K alternative_first_exon CG7530 chr3R - chr3R_10556352_10557105,chr3R_10556352_10557130,chr3R_10556352_10557136,chr3R_10556352_10557148,chr3R_10556352_10557198;chr3R_10556352_10557126 chr3R_10556352_10556761 chr3R_10557127_10557231 chr3R_10556762_10556996 chr3R_10556233_10556351 3.51 2.47 2.60 11.76 1.37 7.02 23.68 6.30 5.33 2.70 3.51 4.59 3.64 9.09 5.13 7.95 3.08 10.64 5.48 3.36 3.33 6.67 1.15 3.03 9.38 4.69 6.82 0.00 4.76 1.30 4.62 4.65 2.44 6.61 6.25 7.69 1.22 1.89 1.33 2.44 2.13 3.68 4.41 0.99 3.95 1.72 0.00 1.54 6.54 2.27 3.80 0.00 0.75 2.33 3.61 1.67 1.03 1.01 K alternative_first_exon CG1275 chr3L - chr3L_2253987_2256605;chr3L_2253987_2257111 chr3L_2253987_2255538 chr3L_2256606_2256758;chr3L_2257112_2257409 chr3L_2255539_2256011 chr3L_2253777_2253986 2.67 1.92 1.48 1.57 2.67 1.82 1.08 1.43 1.92 6.25 1.30 2.59 0.65 0.74 0.70 0.37 2.48 1.94 0.51 2.17 2.08 6.06 6.74 3.66 5.56 1.63 2.13 15.00 7.32 6.82 1.96 3.92 9.09 1.50 3.90 8.47 5.17 4.08 3.85 3.51 6.00 2.02 1.38 8.16 3.70 3.41 2.90 15.15 1.23 2.25 4.40 3.57 4.35 4.84 1.30 3.90 2.11 4.95 K alternative_first_exon f-cup chr3R - chr3R_9524004_9525813;chr3R_9524004_9524789 chr3R_9524004_9524064 chr3R_9525814_9525867;chr3R_9524790_9525263 chr3R_9524065_9524581 chr3R_9523813_9524003 5.56 3.45 4.00 0.00 4.76 3.85 9.09 2.70 3.23 7.69 5.00 3.92 0.00 0.00 6.06 6.45 4.55 9.52 4.55 3.70 4.55 5.56 5.71 5.88 4.76 4.00 6.90 5.56 6.90 4.55 17.78 7.14 7.69 5.13 4.76 9.09 7.69 9.09 7.69 8.33 5.56 5.88 4.55 7.14 5.88 8.00 6.06 7.69 4.65 4.00 7.89 8.33 5.00 5.26 3.12 9.09 3.45 9.52 K alternative_first_exon mrj chr2R - chr2R_12093585_12108627;chr2R_12093585_12097072;chr2R_12093585_12093676;chr2R_12093585_12109174 chr2R_12093585_12097694 chr2R_12097073_12097348;chr2R_12093677_12093767;chr2R_12109175_12109301 chr2R_12097695_12097904 chr2R_12093406_12093584 75.56 81.58 78.38 66.27 71.43 81.25 71.11 75.45 74.04 83.33 75.68 78.65 78.26 72.41 80.33 78.26 72.13 76.74 75.34 71.88 79.07 78.79 70.37 73.47 77.14 73.91 67.35 52.38 80.00 75.00 79.71 84.62 47.06 75.79 76.92 65.52 62.50 77.78 75.00 78.57 51.85 76.92 72.92 73.91 83.33 76.19 80.00 66.67 75.56 79.41 76.00 73.53 66.67 88.46 72.86 87.88 72.22 60.00 K alternative_first_exon Rtnl1 chr2L - chr2L_5004208_5008180 chr2L_5004208_5004613 chr2L_5008181_5009744 chr2L_5004614_5004923 chr2L_5004172_5004207 13.79 13.79 26.67 30.77 24.24 12.12 34.78 48.00 36.21 6.25 10.00 13.85 34.62 18.18 16.67 27.27 25.00 20.69 50.00 22.86 16.67 4.84 10.71 8.33 10.00 8.33 5.88 3.64 5.88 16.67 22.22 13.33 6.90 36.36 20.00 0.00 5.13 5.13 6.45 13.33 11.11 23.21 31.58 16.22 7.14 4.55 6.82 20.83 43.40 13.79 13.89 5.00 6.67 12.50 30.00 4.35 13.64 23.08 K alternative_first_exon BtbVII chr3L + chr3L_3149157_3149627,chr3L_3148922_3149627,chr3L_3149368_3149627,chr3L_3149134_3149627,chr3L_3149161_3149627,chr3L_3148748_3149627;chr3L_3148688_3149627 chr3L_3148738_3149627 chr3L_3148675_3148687 chr3L_3148700_3148737 chr3L_3149628_3150153 0.00 NA NA NA NA NA NA 6.67 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 5.56 0.00 NA NA NA NA NA NA NA NA 0.00 K alternative_first_exon CG8398 chr3L + chr3L_6606922_6608997;chr3L_6603010_6608997 chr3L_6606753_6608997 chr3L_6602677_6603009 chr3L_6606668_6606752 chr3L_6608998_6609696 34.64 35.29 30.77 24.68 38.30 43.33 25.00 40.51 30.00 NA 31.82 44.44 31.25 40.00 34.00 37.66 34.00 32.65 27.42 41.94 37.14 49.18 26.67 33.33 NA 29.03 33.33 50.00 29.41 35.71 37.68 17.65 29.41 37.33 25.93 28.57 39.39 36.84 40.00 33.33 10.53 37.36 38.10 29.17 NA 40.00 NA 28.57 40.43 38.46 39.39 33.33 36.36 NA 36.17 52.94 31.03 22.22 K alternative_first_exon CG1146,CG33232 chr3L + chr3L_2490848_2490979;chr3L_2488891_2490979,chr3L_2489010_2490979 chr3L_2490489_2490979 chr3L_2488838_2488890 chr3L_2490227_2490488 chr3L_2490980_2492613 56.52 75.00 66.67 60.61 66.67 41.18 57.89 61.11 59.57 44.44 NA 60.87 53.33 64.71 46.15 56.52 50.00 36.36 63.16 43.48 40.00 57.58 62.50 50.00 NA 66.67 50.00 58.82 66.67 53.85 66.67 46.67 55.56 51.72 50.00 69.23 43.75 50.00 50.00 65.38 50.00 46.67 58.82 44.83 47.37 66.67 80.00 44.00 46.88 58.33 52.94 66.67 62.50 50.00 63.16 62.50 42.86 60.00 K alternative_first_exon CG10277 chr3R + chr3R_2210445_2210702,chr3R_2209240_2210702;chr3R_2208983_2210702,chr3R_2209244_2210702 chr3R_2210485_2210702 chr3R_2208633_2208982 chr3R_2210057_2210484 chr3R_2210703_2210980 1.92 2.54 2.16 1.87 1.90 0.88 2.06 2.21 1.19 0.99 0.77 2.07 2.44 2.48 2.01 2.27 0.93 2.33 3.01 1.83 2.96 2.71 2.38 1.24 2.88 2.07 1.82 1.77 2.12 1.79 1.71 1.82 2.55 2.53 1.46 1.33 0.98 1.94 1.20 1.92 1.68 1.50 1.82 2.09 2.46 1.16 1.31 1.81 2.31 1.10 2.09 3.26 1.25 2.00 1.20 1.87 2.80 2.42 K alternative_first_exon CG2201 chr2L - chr2L_21618111_21623365 chr2L_21618111_21618708,chr2L_21618111_21618495 chr2L_21623366_21623599 chr2L_21618709_21618772 chr2L_21618004_21618110 24.00 31.82 20.00 21.62 18.75 33.33 30.00 28.95 22.64 27.27 27.78 20.00 14.81 25.71 26.67 24.32 26.32 12.50 18.18 33.33 38.46 30.00 23.08 10.71 14.29 23.53 14.29 22.22 14.29 25.00 30.77 30.00 17.65 20.00 13.64 15.38 20.83 13.33 33.33 24.14 36.36 30.00 15.79 24.00 33.33 14.29 33.33 33.33 31.82 20.00 21.62 26.92 23.08 31.25 28.57 22.73 39.13 15.00 K alternative_first_exon CG9674 chr3L - chr3L_16793055_16793173,chr3L_16793055_16793196;chr3L_16793055_16800632 chr3L_16793055_16793200 chr3L_16800633_16800828 chr3L_16793201_16793289 chr3L_16792584_16793054 14.29 6.82 10.17 13.86 18.52 9.30 12.80 10.24 10.56 20.00 24.39 8.60 8.96 10.45 6.82 17.44 12.70 16.67 12.99 13.39 15.38 36.36 17.81 13.51 12.12 14.29 13.16 35.00 37.21 17.31 16.67 5.26 19.12 9.92 19.57 15.22 18.42 16.67 18.18 16.18 14.29 14.29 11.11 10.00 21.43 18.75 20.59 18.18 9.40 13.04 8.33 17.95 7.14 25.00 9.68 8.70 14.29 15.00 K alternative_first_exon fru chr3R - chr3R_14261513_14303785,chr3R_14261513_14339172;chr3R_14261513_14288988;chr3R_14261513_14340773 chr3R_14261513_14272422 chr3R_14288989_14289003;chr3R_14340774_14341065 chr3R_14272423_14273051 chr3R_14261365_14261512 87.10 88.46 96.55 90.38 81.82 96.30 97.30 92.59 87.32 82.35 91.30 89.66 92.31 96.77 100.00 88.68 92.31 87.10 88.89 95.00 86.96 78.79 82.86 75.00 66.67 89.66 73.08 59.09 81.25 85.19 90.32 83.33 87.18 86.54 88.00 96.00 80.00 63.64 79.17 89.47 89.47 86.79 85.19 74.19 92.86 88.24 78.95 88.00 86.89 64.29 76.92 80.00 85.71 90.91 84.62 92.31 78.57 85.71 K alternative_first_exon lola chr2R - chr2R_6421474_6421652,chr2R_6421474_6422304;chr2R_6421474_6430409;chr2R_6421474_6421682;chr2R_6421474_6428849 chr2R_6421474_6422354 chr2R_6430410_6430794;chr2R_6421683_6421862;chr2R_6428850_6429184 chr2R_6422355_6422583 chr2R_6421081_6421473 55.79 53.66 48.77 52.71 51.22 52.34 49.78 54.88 51.40 62.50 51.96 48.72 47.27 47.51 54.22 46.25 54.03 47.50 50.75 54.30 51.33 81.66 61.62 60.63 64.10 53.73 65.29 67.57 81.71 68.32 48.53 72.13 79.60 47.59 61.22 65.09 57.80 64.94 73.96 59.84 71.83 54.95 46.06 58.79 75.00 71.89 61.33 76.40 53.31 57.78 57.84 50.81 60.71 53.19 51.22 55.79 62.71 76.21 K alternative_first_exon gish chr3R + chr3R_12098576_12099873,chr3R_12098248_12099873;chr3R_12098222_12099873 chr3R_12099053_12099873 chr3R_12098176_12098221 chr3R_12098729_12099052 chr3R_12099874_12100597 100.00 93.33 95.00 97.73 100.00 93.33 96.55 94.00 97.37 100.00 100.00 94.59 95.45 100.00 95.45 95.35 100.00 92.86 96.67 96.30 100.00 94.12 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.55 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 80.00 98.44 97.92 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_first_exon whd chr2R - chr2R_6360956_6365864 chr2R_6360956_6362759 chr2R_6365865_6366073 chr2R_6362760_6362985 chr2R_6360774_6360955 53.33 50.00 62.79 47.44 41.94 50.00 55.32 45.57 52.56 65.52 45.45 53.97 44.19 48.78 50.00 52.11 55.56 54.55 50.88 51.85 54.17 77.42 53.70 47.83 50.00 52.00 57.89 70.00 62.50 45.16 56.76 73.33 64.71 55.38 54.05 54.17 42.42 57.14 58.82 55.00 60.00 48.61 50.00 45.45 52.63 65.52 51.35 67.74 49.41 53.57 53.49 52.94 53.33 52.63 45.10 54.17 52.38 62.50 K alternative_first_exon lola chr2R - chr2R_6421474_6421652,chr2R_6421474_6422304;chr2R_6421474_6430409;chr2R_6421474_6422354;chr2R_6421474_6421682 chr2R_6421474_6428849 chr2R_6430410_6430794;chr2R_6422355_6422583;chr2R_6421683_6421862 chr2R_6428850_6429184 chr2R_6421081_6421473 21.85 24.39 27.78 24.81 19.51 26.56 26.43 21.65 22.07 21.25 20.59 27.88 23.03 25.41 22.89 27.19 20.97 33.33 24.12 21.85 21.24 9.61 16.16 18.11 20.51 23.88 17.36 20.27 12.60 18.32 25.98 14.75 10.34 25.52 17.69 20.71 22.02 14.29 10.42 28.14 17.61 22.18 27.27 25.27 15.52 17.30 20.00 15.09 23.92 20.00 22.16 25.81 22.62 23.40 25.37 22.11 16.95 13.38 K alternative_first_exon dpp chr2L + chr2L_2433918_2455056;chr2L_2429051_2455056;chr2L_2450326_2455056;chr2L_2452415_2455056 chr2L_2454909_2455056 chr2L_2428454_2429050;chr2L_2449061_2450325;chr2L_2451007_2452414 chr2L_2454739_2454908 chr2L_2455057_2455938 0.00 20.00 0.00 10.00 0.00 0.00 11.11 0.00 8.33 25.00 0.00 0.00 12.50 0.00 0.00 11.11 0.00 0.00 0.00 9.09 0.00 11.11 12.50 0.00 0.00 0.00 11.11 18.18 10.00 14.29 0.00 0.00 12.50 12.50 0.00 0.00 0.00 0.00 16.67 0.00 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 8.33 14.29 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 K alternative_first_exon stai chr2L + chr2L_6101799_6113029 chr2L_6110225_6113029 chr2L_6101694_6101798 chr2L_6109681_6110224 chr2L_6113030_6113113 100.00 NA NA 100.00 NA NA NA NA 80.00 NA NA 60.00 NA NA NA NA NA NA NA 100.00 NA NA 75.00 NA NA NA NA NA NA NA 100.00 NA NA NA 100.00 80.00 NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K alternative_first_exon Ptp61F chr3L - chr3L_1346451_1350371 chr3L_1346451_1349198 chr3L_1350372_1350665 chr3L_1349199_1349542 chr3L_1346277_1346450 3.85 2.86 2.86 3.19 2.04 1.47 3.90 3.57 3.42 4.35 5.66 8.26 4.26 3.64 2.60 2.78 4.26 9.09 1.89 17.42 5.66 10.34 4.63 3.23 7.35 3.08 4.60 7.41 5.21 4.69 7.04 3.23 4.49 5.75 8.20 5.56 3.85 2.60 2.88 1.91 1.82 4.03 4.08 2.35 2.04 3.45 2.27 2.36 3.45 7.23 3.96 5.00 1.35 3.57 4.23 4.23 1.33 1.89 K alternative_first_exon cher chr3R - chr3R_12920472_12921085;chr3R_12920472_12923759 chr3R_12920472_12926709 chr3R_12921086_12921266;chr3R_12923760_12924080 chr3R_12926710_12926800 chr3R_12920331_12920471 99.49 99.48 98.89 99.65 100.00 99.00 98.85 99.35 99.32 99.49 99.46 99.52 99.15 99.05 99.71 99.44 99.73 99.49 99.50 99.60 98.70 99.37 99.46 99.52 99.26 99.63 99.23 98.52 99.50 99.59 99.21 99.44 100.00 99.66 99.25 100.00 99.60 99.71 99.79 99.55 99.24 99.72 99.63 99.72 99.40 100.00 100.00 99.09 99.24 100.00 99.62 99.25 99.46 100.00 99.50 100.00 99.33 99.39 K alternative_first_exon CG4822 chr2L - chr2L_120081_120199;chr2L_120081_121632;chr2L_120081_120420 chr2L_120081_120167 chr2L_121633_121751;chr2L_120421_120742 chr2L_120168_120364 chr2L_119828_120080 47.83 48.28 46.97 47.37 38.64 50.00 55.05 49.25 47.71 53.57 36.59 39.85 66.67 52.17 40.70 57.52 49.12 37.29 54.84 41.35 44.00 72.73 34.44 55.22 49.12 32.14 48.81 45.00 41.18 39.19 41.33 58.82 50.98 52.34 60.34 47.76 28.85 41.18 44.83 44.76 48.72 48.85 53.33 48.68 37.84 47.95 41.07 43.90 56.20 60.38 51.90 53.45 31.03 51.52 43.37 44.19 47.83 38.60 K alternative_first_exon Vrp1 chr2R - chr2R_18000094_18000186;chr2R_18000094_18003669,chr2R_18000094_18003655 chr2R_18000094_18009397 chr2R_18000187_18000294;chr2R_18003670_18003843 chr2R_18009398_18010042 chr2R_17999715_18000093 81.25 78.57 82.14 77.55 72.73 75.00 78.38 70.83 71.05 85.71 85.00 71.43 82.61 74.07 73.08 67.44 79.17 84.62 65.71 80.00 72.00 75.81 81.40 80.56 85.00 83.33 90.00 84.62 92.86 86.11 83.87 81.82 90.00 72.34 74.19 85.19 75.00 85.71 81.25 86.79 82.61 75.44 78.26 77.14 81.48 81.48 81.82 89.36 70.18 80.00 73.68 76.92 84.21 86.67 86.21 80.00 82.61 85.00 K alternative_first_exon Pld chr2R + chr2R_2129426_2136916;chr2R_2130225_2136916,chr2R_2130258_2136916 chr2R_2134090_2136916 chr2R_2130127_2130224 chr2R_2133598_2134089 chr2R_2136917_2137523 6.67 NA NA 7.69 NA NA 11.11 6.67 8.33 12.50 NA 0.00 NA NA 12.50 0.00 NA NA NA 0.00 NA NA 0.00 NA NA NA 12.50 NA NA 0.00 NA NA NA 8.33 NA NA 5.88 NA 0.00 10.00 NA 0.00 NA 12.50 NA NA NA NA 10.00 NA NA 0.00 NA NA 0.00 NA NA NA K alternative_first_exon CG4199 chrX - chrX_1962457_1964222;chrX_1962457_1965392 chrX_1962457_1964499 chrX_1965393_1965869 chrX_1964500_1964607 chrX_1960468_1962456 10.78 9.60 10.45 9.29 10.58 13.04 5.96 7.06 8.49 15.79 11.36 12.71 3.70 8.91 8.59 14.29 7.14 5.26 11.97 11.15 10.78 8.86 12.44 14.36 14.42 8.26 11.98 18.40 12.50 7.59 11.56 9.52 5.58 9.14 14.41 8.73 11.61 9.74 13.13 25.00 9.24 10.16 11.46 20.60 10.56 9.03 15.44 10.17 11.74 14.79 12.92 15.74 11.11 12.79 9.21 14.05 8.88 8.86 K alternative_first_exon CG2911,Spec2 chr3R - chr3R_1448411_1449496 chr3R_1448411_1448469 chr3R_1449497_1449810 chr3R_1448470_1448873 chr3R_1447834_1448410 15.00 13.04 16.00 34.38 6.25 16.00 34.38 25.71 24.44 9.09 20.00 16.22 26.09 22.73 9.52 24.00 18.75 14.29 15.38 15.09 20.00 26.09 13.64 11.11 17.65 11.11 23.53 27.27 7.89 3.70 13.33 12.12 8.70 21.95 13.04 16.67 9.09 10.53 10.00 12.96 12.12 20.93 18.18 15.00 5.71 7.02 15.38 8.16 27.27 16.67 13.33 8.00 10.53 18.18 10.00 10.00 33.33 13.79 K alternative_first_exon CG10165 chr2L - chr2L_19528370_19530268,chr2L_19528370_19530089 chr2L_19528370_19528770 chr2L_19530269_19530277 chr2L_19528771_19528996 chr2L_19528088_19528369 70.00 NA NA 53.33 NA 83.33 NA 55.56 58.33 NA NA 50.00 36.36 NA NA 66.67 NA NA NA 56.25 NA 100.00 69.23 75.00 62.50 NA 75.00 NA 85.71 66.67 87.50 NA 87.50 85.71 NA 50.00 NA 62.50 64.29 87.50 75.00 87.50 NA 100.00 61.54 77.78 62.50 92.31 66.67 57.14 70.00 NA 71.43 NA 100.00 66.67 83.33 70.00 K alternative_first_exon CG3835 chrX + chrX_2033170_2037024,chrX_2036036_2037024;chrX_2035640_2037024;chrX_2036963_2037024 chrX_2035852_2037024 chrX_2035521_2035639;chrX_2036765_2036962 chrX_2035729_2035851 chrX_2037025_2037281 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 1.20 0.00 0.00 1.43 2.78 0.00 0.00 0.00 3.57 0.00 2.56 0.00 3.33 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 1.11 0.83 0.00 0.51 0.96 2.94 0.00 0.00 0.00 0.00 0.00 2.08 2.17 0.00 K alternative_first_exon CG3074 chr2R - chr2R_18079361_18089994 chr2R_18079361_18080538 chr2R_18089995_18090178 chr2R_18080539_18080661 chr2R_18079167_18079360 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 K alternative_first_exon Vha44 chr2R - chr2R_12220926_12223994 chr2R_12220926_12221284 chr2R_12223995_12224142 chr2R_12221285_12221483 chr2R_12220783_12220925 0.00 0.00 0.00 0.00 3.23 0.00 0.00 1.06 0.82 0.00 3.57 0.88 2.86 0.00 0.00 0.00 3.70 0.00 0.00 1.64 2.50 1.33 1.12 0.00 1.92 0.00 1.52 2.63 0.00 2.44 1.64 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 1.23 2.08 0.00 0.00 1.56 0.00 1.00 0.00 1.01 0.71 2.04 1.15 0.00 2.08 0.00 1.56 0.00 2.04 0.00 N alternative_first_exon CG5004 chrX + chrX_17024772_17024996,chrX_17024712_17024996;chrX_17023319_17024996 chrX_17024604_17024996 chrX_17023183_17023318 chrX_17024456_17024603 chrX_17024997_17025192 23.70 25.23 25.00 22.79 22.11 26.25 36.62 23.70 23.21 32.18 24.30 27.44 23.47 27.96 28.85 26.98 25.53 34.41 30.91 19.93 29.67 25.41 18.92 22.56 32.10 27.17 30.08 17.17 21.53 23.27 29.09 16.49 22.71 20.96 28.00 27.56 19.23 25.24 21.95 17.76 20.90 19.82 24.36 23.33 17.56 21.43 23.53 19.77 22.83 17.11 22.44 28.12 24.11 17.53 26.09 24.56 28.57 18.69 K alternative_first_exon Argk chr3L - chr3L_9043460_9050642;chr3L_9043460_9044229 chr3L_9043460_9055006 chr3L_9050643_9050679;chr3L_9044230_9044848 chr3L_9055007_9055567 chr3L_9041962_9043459 0.00 NA 0.00 10.00 NA NA 0.00 0.00 2.94 NA NA 4.00 NA NA 0.00 0.00 6.67 0.00 0.00 0.00 0.00 19.35 NA NA NA NA NA 58.33 16.67 NA 4.76 0.00 0.00 0.00 NA 40.00 11.11 NA NA 16.67 0.00 0.00 NA 12.50 3.85 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA 8.33 NA K alternative_first_exon Idh chr3L - chr3L_8351006_8351115;chr3L_8351006_8351949,chr3L_8351006_8351655 chr3L_8351006_8353892 chr3L_8351116_8351225;chr3L_8351950_8352117 chr3L_8353893_8354031 chr3L_8349503_8351005 55.56 42.22 52.94 33.33 44.44 34.48 62.50 47.06 48.89 68.57 33.33 37.21 37.93 55.26 44.19 55.93 53.57 34.78 43.33 31.17 38.10 63.89 65.43 63.01 47.92 22.58 64.20 70.97 62.50 61.36 56.25 61.54 56.25 40.62 60.47 50.00 65.00 31.25 49.02 71.60 66.67 48.72 37.50 83.33 59.46 70.37 69.57 59.57 49.32 68.63 60.81 75.81 60.00 51.06 40.00 63.04 61.54 55.56 K alternative_first_exon CG7971 chr3L - chr3L_1664022_1664531 chr3L_1664022_1664089 chr3L_1664532_1664844 chr3L_1664090_1664226 chr3L_1663920_1664021 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon CG11596 chrX + chrX_1821927_1822366;chrX_1821953_1822366 chrX_1822299_1822366 chrX_1821713_1821952 chrX_1822205_1822298 chrX_1822367_1822613 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon CG31919,CG33995 chr2L + chr2L_5044690_5045821;chr2L_5045484_5045821 chr2L_5043384_5045821 chr2L_5044307_5044689;chr2L_5045398_5045483 chr2L_5043269_5043383 chr2L_5045822_5045925 94.44 97.67 96.15 96.08 97.92 94.87 97.39 97.89 96.85 96.67 94.74 98.25 100.00 96.49 94.29 94.25 96.23 95.45 92.86 95.50 91.67 94.23 88.24 94.44 90.00 95.00 93.24 93.55 87.18 91.89 95.33 86.21 92.68 95.51 91.67 89.74 94.29 93.18 94.12 95.79 91.30 97.14 89.36 91.94 96.00 93.33 89.19 82.61 95.69 96.08 91.84 95.24 96.30 94.74 94.29 92.68 97.73 83.87 K alternative_first_exon pod1 chrX + chrX_6699642_6699710,chrX_6699505_6699710,chrX_6699283_6699710;chrX_6699040_6699710;chrX_6698211_6699710;chrX_6699509_6699710 chrX_6697800_6699710 chrX_6699018_6699039;chrX_6697930_6698210;chrX_6699418_6699508 chrX_6697720_6697799 chrX_6699711_6700251 76.67 77.78 85.71 81.13 89.29 80.00 86.67 79.07 81.18 72.22 72.41 77.78 82.61 66.67 82.14 87.76 76.19 83.87 84.62 81.25 89.66 68.57 61.11 42.86 77.78 84.21 77.78 66.67 78.95 68.42 89.19 83.33 73.08 72.73 76.92 40.00 70.97 75.00 72.22 76.67 72.73 75.47 78.26 71.43 NA 70.00 80.00 59.38 73.08 NA 61.11 68.75 66.67 NA 71.79 NA 87.50 52.63 K alternative_first_exon Nrg chrX + chrX_8411791_8425729;chrX_8411454_8425729 chrX_8411543_8425729,chrX_8411668_8425729 chrX_8411406_8411453 chrX_8411521_8411542 chrX_8425730_8426052 14.29 NA NA 9.09 NA NA NA 9.09 14.81 NA NA 8.33 NA NA NA 35.29 NA NA NA 12.50 NA NA NA NA NA NA NA NA NA NA 14.29 NA 28.57 16.67 NA NA NA NA NA NA NA 10.00 NA NA NA NA NA 57.14 7.14 NA NA NA NA NA NA NA NA 46.15 K alternative_first_exon CG33156 chr2R - chr2R_9437422_9438177;chr2R_9437422_9439612,chr2R_9437422_9439456 chr2R_9437422_9437491 chr2R_9438178_9438952;chr2R_9439613_9439911 chr2R_9437492_9437780 chr2R_9437104_9437421 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_first_exon CG41378 chr2RHet - chr2RHet_1545717_1545955,chr2RHet_1545717_1547044,chr2RHet_1545717_1605870;chr2RHet_1545717_1621569,chr2RHet_1545717_1621473 chr2RHet_1545717_1605712 chr2RHet_1621570_1621578 chr2RHet_1605713_1606048 chr2RHet_1545386_1545716 86.21 84.91 85.58 52.08 82.86 84.27 81.07 86.85 77.90 96.88 97.67 88.18 83.52 80.61 87.74 80.89 82.57 96.97 76.98 84.46 97.78 96.36 92.86 85.00 88.89 86.32 71.05 68.89 91.76 94.29 89.26 82.28 89.06 79.26 83.58 86.36 92.98 95.16 96.47 82.91 89.47 82.06 77.55 87.50 94.92 86.13 86.49 96.55 78.92 75.24 86.21 95.65 94.37 79.57 85.16 81.20 89.73 91.76 K alternative_first_exon Bsg25D chr2L - chr2L_5277181_5277957,chr2L_5277181_5277933 chr2L_5277181_5277246 chr2L_5277958_5278558 chr2L_5277247_5277338 chr2L_5276936_5277180 0.00 4.35 0.00 3.45 0.00 0.00 0.00 0.00 2.56 18.18 0.00 2.50 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 11.11 2.94 4.00 0.00 0.00 0.00 10.00 4.35 0.00 0.00 0.00 4.76 3.33 0.00 0.00 7.41 5.26 0.00 5.88 6.67 2.38 0.00 0.00 7.69 0.00 4.76 0.00 0.00 11.76 3.33 5.26 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon gus chr2R - chr2R_1009346_1015730 chr2R_1009346_1009487 chr2R_1015731_1015817 chr2R_1009488_1009755 chr2R_1009278_1009345 90.00 NA NA 92.86 NA NA NA 87.50 82.35 NA NA 90.00 100.00 NA NA 80.00 NA NA 85.71 NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA 81.82 100.00 NA NA NA NA NA 100.00 83.33 NA NA NA NA NA NA NA NA K alternative_first_exon lola chr2R - chr2R_6421474_6421652,chr2R_6421474_6422304;chr2R_6421474_6430409;chr2R_6421474_6422354;chr2R_6421474_6428849 chr2R_6421474_6421682 chr2R_6430410_6430794;chr2R_6422355_6422583;chr2R_6428850_6429184 chr2R_6421683_6421862 chr2R_6421081_6421473 1.41 1.63 1.85 3.10 2.44 0.78 1.32 2.13 2.23 0.00 1.96 1.60 2.42 2.21 1.20 2.81 1.61 1.67 1.51 1.66 2.65 0.87 1.01 0.79 0.85 1.49 0.83 2.03 0.00 0.99 1.96 0.82 0.57 1.38 1.36 1.78 0.92 2.60 0.00 0.27 1.41 1.37 2.42 1.65 0.00 1.08 1.33 0.39 1.73 1.11 0.54 1.61 1.19 0.00 1.46 3.16 1.69 0.00 K alternative_first_exon Sema-1b chr2R - chr2R_13566288_13566648;chr2R_13566288_13570897;chr2R_13566288_13570399 chr2R_13566288_13566564 chr2R_13570898_13571000;chr2R_13570400_13570499 chr2R_13566565_13566747 chr2R_13565777_13566287 47.14 26.92 48.15 49.15 31.82 41.38 51.67 43.94 40.48 20.00 47.06 50.00 58.06 44.19 55.56 54.24 38.46 41.18 48.94 55.81 58.82 53.12 50.00 25.00 28.57 45.00 42.86 30.00 38.46 42.86 51.22 NA 37.50 47.22 54.55 47.83 27.27 NA 54.55 48.39 46.67 48.21 56.25 36.36 NA 48.00 NA 48.48 52.38 NA 30.30 33.33 NA NA 52.78 44.44 55.56 41.67 K alternative_first_exon CG32767 chrX - chrX_4976273_4976923;chrX_4976273_4976914;chrX_4976273_4978605 chrX_4976273_4976554 chrX_4976915_4976973;chrX_4978606_4978760 chrX_4976555_4976797 chrX_4975519_4976272 18.90 NA NA 20.00 NA NA 21.05 18.75 19.05 NA NA 16.67 12.50 12.50 NA 17.65 NA NA 33.33 20.00 NA 14.29 20.00 NA NA NA NA NA NA NA NA NA NA 18.75 11.11 25.00 NA NA NA 14.29 NA 20.00 20.00 NA NA NA NA 25.00 18.18 NA NA NA NA NA NA NA NA NA K alternative_first_exon SNF4Agamma chr3R + chr3R_17028308_17033340 chr3R_17031773_17033340 chr3R_17028174_17028307 chr3R_17030652_17031772 chr3R_17033341_17033389 35.62 33.33 33.33 32.81 23.91 26.67 38.36 26.03 16.50 43.59 25.58 33.33 20.45 24.44 25.93 31.25 21.43 19.15 26.67 34.38 19.44 66.43 54.17 38.46 50.85 27.27 42.35 51.35 56.00 54.84 35.62 44.44 52.81 33.33 44.23 55.71 45.19 38.36 41.84 47.37 44.83 28.44 21.43 40.24 51.72 40.68 47.17 49.30 27.47 50.00 42.22 37.78 25.00 43.48 22.58 33.33 28.89 30.43 K alternative_first_exon CG2162 chr3L + chr3L_3035365_3037783 chr3L_3036902_3037783 chr3L_3035198_3035364 chr3L_3036729_3036901 chr3L_3037784_3037961 98.70 98.41 98.59 94.55 100.00 98.33 98.72 94.39 98.44 97.22 100.00 99.05 96.67 100.00 98.84 97.73 96.15 100.00 97.26 99.41 100.00 95.96 98.90 100.00 97.73 98.70 100.00 100.00 94.64 97.44 98.72 98.36 99.19 99.04 100.00 100.00 100.00 98.65 98.55 99.21 98.73 98.54 97.73 98.48 98.61 98.85 98.21 99.03 97.73 98.25 98.72 100.00 97.50 100.00 98.78 97.96 97.96 100.00 K alternative_first_exon alph chr3R + chr3R_25417944_25418993;chr3R_25417890_25418993 chr3R_25418927_25418993 chr3R_25417542_25417889 chr3R_25418825_25418926 chr3R_25418994_25419885 0.00 0.93 0.00 0.56 0.00 0.00 0.56 0.48 0.34 0.00 0.00 0.00 0.00 0.00 0.00 0.52 0.00 0.00 0.68 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 1.27 2.02 0.00 0.67 0.00 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.38 0.00 0.86 0.00 0.00 0.00 0.00 0.43 2.11 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 K alternative_first_exon CG17159,CG17162 chrXHet - chrXHet_69232_75198;chrXHet_69232_71032;chrXHet_69232_75430,chrXHet_69232_75279,chrXHet_69232_75250 chrXHet_69232_75524 chrXHet_71033_71449;chrXHet_75431_75487 chrXHet_75525_75553 chrXHet_69195_69231 6.15 5.88 9.38 18.52 17.39 4.76 6.82 13.51 6.15 0.00 9.52 12.50 11.76 9.09 6.90 7.32 5.26 11.11 12.00 11.67 0.00 3.33 3.70 0.00 0.00 4.88 0.00 0.00 5.56 5.26 15.38 9.09 12.50 9.52 0.00 0.00 0.00 4.17 2.94 9.38 0.00 8.51 11.76 0.00 18.18 8.33 0.00 9.09 6.78 0.00 0.00 0.00 8.33 0.00 11.43 0.00 0.00 7.69 K alternative_first_exon Su(var)3-9 chr3R - chr3R_11088444_11088789;chr3R_11088444_11089003 chr3R_11088444_11088518 chr3R_11089004_11089196 chr3R_11088519_11088659 chr3R_11088269_11088443 0.70 0.00 0.00 0.91 0.70 0.00 0.40 0.00 0.56 0.00 0.00 0.64 0.68 0.61 0.53 0.37 0.00 2.92 0.56 1.14 0.00 3.65 0.95 0.58 0.76 0.60 1.85 0.80 2.75 1.04 0.57 1.01 1.01 0.41 0.76 2.65 2.50 0.67 1.03 1.49 1.25 0.00 0.70 0.71 0.89 1.91 0.60 1.60 0.88 0.68 0.90 0.76 0.00 0.79 0.97 0.68 0.53 0.63 K alternative_first_exon cpx chr3R + chr3R_110129_120841 chr3R_117795_120841,chr3R_117992_120841 chr3R_109948_110128 chr3R_117670_117794 chr3R_120842_121008 0.00 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon Fkbp13 chr2R - chr2R_17382832_17384137;chr2R_17382832_17385285 chr2R_17382832_17384568 chr2R_17385286_17385431 chr2R_17384569_17384713 chr2R_17382636_17382831 99.28 99.51 99.43 98.95 98.94 99.28 97.52 99.07 98.37 98.65 99.53 99.51 98.40 99.31 99.28 98.74 99.19 99.18 99.35 98.72 99.19 99.12 98.86 99.61 99.65 99.07 99.71 99.46 99.04 98.19 98.57 99.11 98.38 98.72 99.63 99.61 99.59 100.00 99.67 99.15 98.00 99.23 99.24 99.74 99.52 99.54 100.00 99.48 99.45 99.62 99.72 99.25 99.79 99.47 99.52 99.77 99.80 98.83 K alternative_first_exon jing chr2R + chr2R_2501388_2501609,chr2R_2498469_2501609,chr2R_2501514_2501609,chr2R_2501482_2501609;chr2R_2391194_2501609;chr2R_2498404_2501609 chr2R_2501376_2501609,chr2R_2501545_2501609 chr2R_2389764_2391193;chr2R_2498010_2498403 chr2R_2501294_2501375 chr2R_2501610_2503246 88.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 88.89 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon Snp chr2R + chr2R_17951233_17955931,chr2R_17955706_17955931;chr2R_17948766_17955931,chr2R_17949087_17955931 chr2R_17954788_17955931 chr2R_17948458_17948765 chr2R_17954413_17954787 chr2R_17955932_17956176 73.91 74.07 73.91 66.67 75.00 80.00 72.41 62.86 72.22 80.77 55.56 68.18 72.73 66.67 73.08 65.00 76.47 68.75 70.83 68.85 62.50 69.70 81.82 68.89 72.00 73.68 75.76 66.67 82.76 76.67 79.17 82.61 71.88 63.89 85.71 75.86 82.50 75.00 86.36 72.92 79.17 79.17 73.33 70.97 73.91 75.00 70.97 83.87 74.47 80.49 78.72 77.27 74.29 74.19 71.88 78.57 65.79 70.27 K alternative_first_exon CG6707 chr3L - chr3L_9889736_9891028 chr3L_9889736_9889807 chr3L_9891029_9891536 chr3L_9889808_9889846 chr3L_9889554_9889735 0.00 0.95 0.00 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 0.00 1.11 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 1.41 0.00 1.27 0.00 0.00 K alternative_first_exon CG1358 chr2R - chr2R_3493750_3495926;chr2R_3493750_3507837;chr2R_3493750_3501438 chr2R_3493750_3501965 chr2R_3495927_3495958;chr2R_3507838_3507944;chr2R_3501439_3501727 chr2R_3501966_3502040 chr2R_3493449_3493749 2.56 0.00 3.85 0.00 3.57 0.00 0.00 2.78 2.04 18.75 0.00 4.76 0.00 0.00 2.86 2.56 4.17 6.25 3.70 1.92 0.00 7.14 2.78 3.33 7.69 0.00 0.00 0.00 0.00 4.55 6.45 0.00 0.00 4.35 0.00 0.00 8.82 0.00 0.00 0.00 4.35 8.57 0.00 0.00 8.00 2.86 4.55 0.00 0.00 4.55 5.88 0.00 0.00 15.38 0.00 5.88 5.26 3.23 K alternative_first_exon sol chrX + chrX_21221878_21222886 chrX_21222794_21222886 chrX_21221357_21221877 chrX_21222638_21222793 chrX_21222887_21223512 4.65 4.71 5.19 4.08 5.08 4.84 7.14 7.22 5.61 3.70 12.50 5.00 8.62 11.29 7.50 4.65 7.14 6.76 6.67 5.56 7.69 6.50 5.07 2.70 4.23 8.20 2.97 5.26 2.84 3.76 4.05 1.37 3.74 4.24 3.49 4.26 2.59 4.90 1.54 3.10 2.97 4.95 5.66 4.35 2.88 2.83 6.90 3.32 4.43 4.76 2.75 3.03 2.94 2.27 10.10 3.23 5.77 2.82 K alternative_first_exon fd68A chr3L - chr3L_11111166_11112495;chr3L_11111166_11112264;chr3L_11111166_11113709;chr3L_11111166_11113381 chr3L_11111166_11111514 chr3L_11112265_11112519;chr3L_11113710_11113875;chr3L_11113382_11113511 chr3L_11111515_11111566 chr3L_11110405_11111165 7.55 5.88 7.14 8.00 10.53 5.00 8.51 9.84 7.27 10.00 0.00 9.09 8.57 6.67 6.25 6.25 4.17 9.09 5.41 8.06 5.56 14.29 3.85 4.76 9.52 12.00 4.17 18.18 11.11 6.67 9.09 14.29 14.29 7.55 0.00 8.00 9.09 0.00 4.35 6.90 10.00 8.00 5.88 7.69 14.29 10.00 3.70 11.11 6.35 4.35 3.45 16.67 0.00 12.50 9.09 5.00 5.00 5.00 K alternative_first_exon fwd chr3L - chr3L_311286_313023 chr3L_311286_311381 chr3L_313024_314317 chr3L_311382_311642 chr3L_311174_311285 8.99 7.87 10.23 8.53 13.92 12.82 13.76 13.85 10.00 10.00 10.29 8.98 9.86 11.54 10.75 11.61 11.84 11.59 10.71 5.59 10.29 13.26 6.02 7.48 6.90 5.33 8.53 14.52 8.99 8.11 11.11 13.89 9.65 11.03 5.95 6.73 5.88 6.00 3.01 4.85 9.76 9.44 5.97 7.89 4.65 5.26 6.67 6.29 11.52 9.09 6.67 7.46 8.33 3.23 8.00 6.82 11.43 9.84 K alternative_first_exon tlk chrX + chrX_3656891_3675687,chrX_3634238_3675687,chrX_3674212_3675687,chrX_3618905_3675687;chrX_3674723_3675687;chrX_3667068_3675687;chrX_3670471_3675687,chrX_3671394_3675687 chrX_3615681_3675687 chrX_3674176_3674722;chrX_3666673_3667067;chrX_3670092_3670470 chrX_3615409_3615680 chrX_3675688_3677592 10.00 11.11 15.62 14.29 14.29 9.52 11.90 11.48 12.82 9.52 15.38 14.29 19.35 14.29 9.68 10.53 14.81 11.11 10.81 9.62 10.00 11.11 13.04 5.71 8.00 6.90 3.33 5.56 3.45 10.53 16.00 0.00 8.57 10.17 3.12 2.50 7.69 9.52 3.03 11.11 6.25 10.94 16.00 8.57 8.33 9.09 5.00 7.55 8.33 11.76 9.52 9.68 22.22 12.50 10.81 6.25 7.69 13.04 K alternative_first_exon CG10962 chrX - chrX_8867414_8873486 chrX_8867414_8867687 chrX_8873487_8873864 chrX_8867688_8868276 chrX_8866946_8867413 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.29 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_first_exon dpr17 chr3R + chr3R_7922739_7932860 chr3R_7924379_7932860 chr3R_7921771_7922738 chr3R_7923808_7924378 chr3R_7932861_7933804 4.17 5.00 3.45 2.27 0.00 3.70 6.90 7.69 5.13 5.56 11.11 4.76 4.35 6.06 5.56 5.77 4.35 3.33 6.06 3.49 4.76 3.45 4.62 2.56 7.41 2.86 3.12 5.88 3.85 3.23 7.14 0.00 2.63 3.64 6.90 13.33 1.96 0.00 2.17 4.35 4.35 3.03 4.35 1.61 2.78 4.88 2.86 5.66 4.00 4.17 4.55 4.00 4.55 3.70 5.71 3.45 2.50 3.33 K alternative_first_exon stv chr3L + chr3L_13473703_13474132;chr3L_13471583_13474132 chr3L_13474015_13474132 chr3L_13470653_13471582 chr3L_13473864_13474014 chr3L_13474133_13474235 0.00 NA NA 0.00 NA NA 20.00 0.00 NA NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA NA NA 0.00 0.00 NA NA 0.00 0.00 25.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 25.00 0.00 0.00 NA 0.00 NA 12.50 0.00 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 K alternative_first_exon CG11984 chr3R - chr3R_4839215_4839655,chr3R_4839215_4839728,chr3R_4839215_4839799,chr3R_4839215_4839889,chr3R_4839215_4840394;chr3R_4839215_4839561;chr3R_4839215_4839851;chr3R_4839215_4840589,chr3R_4839215_4840474;chr3R_4839215_4839966 chr3R_4839215_4839300 chr3R_4839562_4839754;chr3R_4839852_4839944;chr3R_4840590_4840610;chr3R_4839967_4840095 chr3R_4839301_4839365 chr3R_4839038_4839214 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon Hsc70-3 chrX - chrX_11699076_11699138,chrX_11699076_11699335,chrX_11699076_11699923,chrX_11699076_11700062;chrX_11699076_11699321;chrX_11699076_11700901 chrX_11699076_11700276,chrX_11699076_11700110 chrX_11699322_11699393;chrX_11700902_11701212 chrX_11700277_11700394 chrX_11698930_11699075 49.58 56.44 54.17 50.82 65.16 50.38 44.56 49.58 53.50 27.69 57.50 54.52 61.08 49.59 60.21 45.66 51.47 64.43 52.79 53.75 56.76 52.04 47.89 46.81 55.88 69.57 62.32 53.62 34.57 38.97 47.64 29.22 35.03 48.61 36.30 45.24 61.88 51.58 63.33 29.62 35.39 52.58 56.11 21.89 32.43 19.47 47.37 21.40 49.26 48.39 45.75 45.00 46.88 41.67 58.06 49.21 60.36 30.13 N alternative_first_exon Moe chrX - chrX_8774434_8774689,chrX_8774434_8775292,chrX_8774434_8775660,chrX_8774434_8775874;chrX_8774434_8792216;chrX_8774434_8788091;chrX_8774434_8785766,chrX_8774434_8785594 chrX_8774434_8791943,chrX_8774434_8791871 chrX_8792217_8792343;chrX_8788092_8788228;chrX_8785767_8785834 chrX_8791944_8792031 chrX_8774325_8774433 1.78 2.64 1.96 3.02 2.45 2.06 1.56 2.19 1.42 1.13 1.30 1.88 1.87 2.31 1.39 3.31 1.89 1.42 2.22 1.59 1.83 1.65 2.92 1.95 1.64 1.88 2.52 1.94 1.17 1.17 2.83 1.60 0.30 1.78 0.88 2.31 1.87 1.60 2.34 1.21 0.79 1.67 1.49 1.97 1.13 1.69 2.67 1.00 1.20 2.55 2.15 1.22 2.33 2.78 1.46 1.33 1.32 0.51 K alternative_first_exon bun chr2L - chr2L_12458224_12477114 chr2L_12458224_12460588 chr2L_12477115_12477166 chr2L_12460589_12461237 chr2L_12457138_12458223 68.87 71.31 71.43 73.30 54.84 67.00 73.36 73.26 71.27 63.83 63.73 67.78 67.63 74.34 60.31 75.19 72.48 62.18 73.03 62.70 68.87 66.46 75.38 67.62 69.74 62.26 63.06 82.43 59.09 67.86 74.13 62.07 75.47 72.80 77.00 68.13 62.91 68.13 55.26 70.91 74.60 67.77 70.97 71.33 62.50 74.00 68.97 75.00 71.76 67.65 63.19 65.17 58.73 63.64 71.62 69.62 67.90 70.00 K alternative_first_exon Ars2 chr2R - chr2R_1972736_1972822,chr2R_1972736_1972835;chr2R_1972736_1973054 chr2R_1972736_1972786 chr2R_1973055_1973125 chr2R_1972787_1972871 chr2R_1972591_1972735 0.00 0.00 4.76 0.00 0.00 0.00 2.63 4.17 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 4.17 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.50 NA 1.52 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon slmo chr2L - chr2L_6047781_6048133 chr2L_6047781_6047899 chr2L_6048134_6048505 chr2L_6047900_6047941 chr2L_6046654_6047780 35.29 26.67 56.41 58.33 65.12 52.78 32.14 69.23 51.56 21.05 48.28 40.00 52.38 48.00 52.17 59.09 61.29 52.50 57.14 42.35 48.28 35.90 15.79 21.88 16.67 44.83 8.70 30.00 14.29 14.81 58.73 47.62 33.33 67.80 23.08 16.67 15.22 20.00 12.50 35.29 25.00 64.44 54.84 24.00 53.52 12.82 11.76 20.45 53.52 21.21 33.33 18.18 20.51 10.00 52.27 20.00 12.50 37.93 K alternative_first_exon jing chr2R + chr2R_2501388_2501609,chr2R_2498469_2501609,chr2R_2501514_2501609,chr2R_2501482_2501609;chr2R_2501376_2501609,chr2R_2501545_2501609;chr2R_2391194_2501609 chr2R_2498404_2501609 chr2R_2501294_2501375;chr2R_2389764_2391193 chr2R_2498010_2498403 chr2R_2501610_2503246 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon jing chr2R + chr2R_2501388_2501609,chr2R_2498469_2501609,chr2R_2501514_2501609,chr2R_2501482_2501609;chr2R_2501376_2501609,chr2R_2501545_2501609;chr2R_2498404_2501609 chr2R_2391194_2501609 chr2R_2501294_2501375;chr2R_2498010_2498403 chr2R_2389764_2391193 chr2R_2501610_2503246 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon CG4165 chrX + chrX_5316449_5316612,chrX_5316536_5316612,chrX_5315965_5316612,chrX_5315734_5316612,chrX_5315730_5316612;chrX_5316160_5316612;chrX_5315701_5316612 chrX_5316300_5316612,chrX_5316313_5316612 chrX_5315939_5316159;chrX_5315563_5315700 chrX_5316237_5316299 chrX_5316613_5317050 18.35 21.43 12.50 14.81 25.00 27.27 13.33 17.39 10.00 37.50 16.67 15.62 0.00 31.25 13.33 5.26 6.67 18.75 6.25 13.51 15.38 38.10 10.00 23.53 18.18 15.38 26.67 6.67 30.00 27.78 5.88 NA 50.00 18.52 45.45 23.08 26.09 20.00 33.33 23.81 NA 10.00 0.00 30.00 NA 25.00 8.33 33.33 16.13 0.00 27.27 30.77 15.38 12.50 21.05 38.46 12.50 36.36 K alternative_first_exon SPoCk chr3L + chr3L_22766852_22770210,chr3L_22768238_22770210;chr3L_22768472_22770210;chr3L_22766817_22770210 chr3L_22743093_22770210 chr3L_22768418_22768471;chr3L_22766638_22766816 chr3L_22742544_22743092 chr3L_22770211_22771924 5.26 9.38 2.63 3.45 2.38 8.00 2.86 3.45 3.49 10.64 2.86 2.22 3.45 2.86 2.17 2.08 3.33 3.57 0.00 2.33 4.00 26.19 8.77 8.16 12.90 2.50 8.16 23.53 11.76 9.38 2.63 6.25 13.79 1.67 7.69 4.55 7.58 11.76 8.77 5.26 8.70 4.48 2.63 6.12 11.11 5.71 3.85 6.52 2.90 8.00 6.98 3.70 6.25 15.38 2.00 4.17 10.00 10.53 K alternative_first_exon G-oalpha47A chr2R + chr2R_6325600_6326879,chr2R_6326243_6326879;chr2R_6325857_6326879;chr2R_6325612_6326879 chr2R_6325802_6326879 chr2R_6325808_6325856;chr2R_6325466_6325611 chr2R_6325766_6325801 chr2R_6326880_6326950 10.00 NA 9.09 10.00 NA NA 6.25 10.53 13.64 NA NA 7.14 NA 11.11 12.50 10.00 13.33 NA 0.00 12.50 NA 10.00 14.29 NA NA NA NA NA NA 18.18 5.88 NA 0.00 5.26 NA NA NA NA NA 7.14 NA 11.11 NA 0.00 NA 10.00 NA 14.29 11.76 NA 11.11 NA NA NA 0.00 NA NA 15.38 K alternative_first_exon mub chr3L + chr3L_21896097_21900445,chr3L_21881793_21900445,chr3L_21872837_21900445;chr3L_21838336_21900445 chr3L_21873042_21900445 chr3L_21837888_21838335 chr3L_21872673_21873041 chr3L_21900446_21901020 93.65 89.47 100.00 86.67 95.00 90.91 92.50 91.30 93.65 92.31 65.00 95.00 95.45 95.65 88.89 96.97 95.83 85.71 100.00 92.00 77.78 100.00 92.59 89.47 90.00 95.83 90.48 91.67 93.75 94.44 92.59 90.00 100.00 92.31 90.48 92.86 100.00 91.67 94.12 97.78 100.00 91.49 95.00 96.67 87.50 93.33 100.00 96.43 94.23 91.67 100.00 93.33 100.00 100.00 96.67 88.89 100.00 94.44 K alternative_first_exon bip1 chr3L - chr3L_8049274_8050979 chr3L_8049274_8049408 chr3L_8050980_8051146 chr3L_8049409_8049472 chr3L_8048976_8049273 14.29 11.11 20.00 20.00 22.22 20.00 22.22 27.27 13.33 25.00 12.50 25.00 NA NA 14.29 13.33 NA 0.00 NA 24.00 0.00 36.36 21.43 0.00 NA 14.29 0.00 9.09 NA 9.09 36.36 0.00 16.67 21.43 12.50 8.33 21.43 11.11 9.09 10.53 0.00 22.22 NA 14.29 NA 0.00 37.50 14.29 18.18 15.38 0.00 22.22 0.00 0.00 33.33 0.00 11.76 4.44 K alternative_first_exon CG9331 chr2L + chr2L_20824494_20826632 chr2L_20826088_20826632 chr2L_20824436_20824493 chr2L_20825471_20826087 chr2L_20826633_20826970 99.83 100.00 99.68 98.24 99.55 100.00 99.69 99.05 99.82 100.00 100.00 99.82 98.31 99.13 100.00 99.44 99.44 99.54 100.00 99.10 100.00 100.00 99.79 100.00 100.00 99.57 99.77 100.00 100.00 100.00 100.00 100.00 100.00 99.74 100.00 100.00 99.81 100.00 99.82 99.78 100.00 99.83 99.50 99.78 99.78 100.00 100.00 99.73 99.57 99.65 100.00 100.00 100.00 100.00 99.66 99.76 100.00 100.00 K alternative_first_exon CG16718 chr3R - chr3R_15465136_15466705;chr3R_15465136_15467799 chr3R_15465136_15466820 chr3R_15467800_15468466 chr3R_15466821_15466908 chr3R_15464748_15465135 22.73 22.73 25.93 22.22 22.22 23.08 22.22 20.69 15.22 15.00 20.00 22.50 24.00 18.18 17.86 18.75 21.74 16.67 21.74 31.91 20.00 35.90 34.09 20.00 22.73 20.00 26.47 40.62 17.65 29.41 34.48 28.57 19.15 23.08 32.26 32.26 29.73 15.00 27.59 25.93 17.65 25.53 11.11 30.00 29.41 28.00 27.78 22.92 21.05 29.41 20.51 22.73 18.75 27.27 14.29 21.43 28.57 24.14 K alternative_first_exon Myo61F chr3L + chr3L_1324630_1325994;chr3L_1318770_1325994;chr3L_1321181_1325994 chr3L_1325261_1325994 chr3L_1318482_1318769;chr3L_1321029_1321180 chr3L_1325124_1325260 chr3L_1325995_1326139 3.16 2.11 3.12 2.12 1.63 2.03 3.33 3.56 3.23 3.37 5.36 2.59 2.52 2.07 2.37 2.46 3.38 6.57 3.16 4.79 4.69 2.72 3.91 3.98 1.90 2.60 2.52 4.65 4.35 2.63 2.03 3.26 4.83 4.04 2.14 3.23 3.57 3.17 3.65 1.27 3.70 3.85 2.22 3.70 4.76 3.66 3.68 4.17 3.27 1.48 1.69 2.19 2.78 1.39 1.54 2.46 1.12 2.89 K alternative_first_exon Imp chrX - chrX_10693027_10707281;chrX_10693027_10699298 chrX_10693027_10693783 chrX_10707282_10708126;chrX_10699299_10699502 chrX_10693784_10693957 chrX_10692652_10693026 24.36 29.63 24.36 16.67 25.76 21.54 17.97 22.38 24.40 27.91 21.92 24.81 22.09 21.18 22.67 18.79 18.52 26.09 18.18 25.81 28.12 26.09 29.89 31.71 30.00 26.67 23.81 12.24 10.87 23.21 28.72 20.00 15.56 18.71 27.03 18.52 35.90 38.10 41.46 20.00 4.17 25.78 22.54 31.34 13.33 6.90 31.82 10.00 24.83 21.43 29.23 30.56 25.00 35.71 25.53 18.18 31.25 11.76 K alternative_first_exon stck chr3R + chr3R_4182496_4184192;chr3R_4182818_4184192;chr3R_4183179_4184192 chr3R_4184127_4184192 chr3R_4182689_4182817;chr3R_4183057_4183178 chr3R_4184058_4184126 chr3R_4184193_4184312 70.45 76.09 65.12 64.29 80.49 85.00 68.25 73.13 72.57 60.87 73.68 64.20 48.15 62.86 67.44 65.45 72.50 80.43 70.45 67.82 75.00 83.59 63.79 68.89 64.52 67.35 76.60 67.86 61.11 79.31 64.71 76.92 62.07 71.62 75.00 87.10 71.05 65.71 77.78 69.84 61.90 73.96 74.36 73.44 55.88 69.57 75.51 66.67 80.00 64.15 65.96 71.11 78.26 73.33 68.85 74.14 81.32 66.67 K alternative_first_exon Rcd1 chr2R - chr2R_10039432_10040350 chr2R_10039432_10040098,chr2R_10039432_10039568 chr2R_10040351_10040624 chr2R_10040099_10040188 chr2R_10039112_10039431 37.25 37.93 37.50 44.64 44.44 37.04 36.96 35.29 45.90 40.00 40.00 35.00 34.38 37.04 40.00 33.33 46.15 48.39 40.62 44.12 40.91 40.00 31.82 32.56 40.00 38.89 36.84 26.32 26.32 30.00 31.03 34.78 36.96 37.25 40.62 34.48 35.14 41.18 37.78 32.35 37.50 38.71 40.74 38.71 40.74 28.00 40.00 27.45 40.35 21.88 34.15 34.78 39.29 33.33 45.71 32.00 32.26 34.09 K alternative_first_exon CG4165 chrX + chrX_5316449_5316612,chrX_5316536_5316612,chrX_5315965_5316612,chrX_5315734_5316612,chrX_5315730_5316612;chrX_5316300_5316612,chrX_5316313_5316612;chrX_5315701_5316612 chrX_5316160_5316612 chrX_5316237_5316299;chrX_5315563_5315700 chrX_5315939_5316159 chrX_5316613_5317050 62.02 71.43 68.75 70.37 75.00 45.45 80.00 78.26 66.67 50.00 58.33 71.88 80.00 50.00 73.33 73.68 80.00 56.25 87.50 64.86 61.54 57.14 80.00 58.82 63.64 69.23 73.33 60.00 50.00 61.11 58.82 NA 38.89 62.96 45.45 69.23 52.17 60.00 55.56 52.38 NA 76.67 53.85 50.00 NA 50.00 58.33 50.00 70.97 66.67 68.18 61.54 69.23 50.00 68.42 46.15 62.50 54.55 K alternative_first_exon MED6 chr3R - chr3R_5593601_5594085;chr3R_5593601_5593886 chr3R_5593601_5593698 chr3R_5594086_5594211;chr3R_5593887_5593976 chr3R_5593699_5593832 chr3R_5593573_5593600 78.76 77.27 80.95 76.00 83.33 78.95 82.14 73.08 82.05 NA 75.00 68.75 89.47 84.21 80.77 81.82 66.67 81.82 73.08 74.29 66.67 33.33 76.00 84.21 88.89 94.12 95.24 58.33 62.50 76.92 73.68 70.59 65.22 89.29 83.33 81.25 64.29 83.33 78.26 79.41 71.43 85.29 78.57 55.56 57.14 81.82 78.95 80.00 71.88 85.00 81.82 76.92 66.67 92.31 80.95 84.21 63.64 57.14 K alternative_first_exon Moe chrX - chrX_8785657_8785727;chrX_8785657_8792216 chrX_8785657_8785766 chrX_8792217_8792343 chrX_8785767_8785836 chrX_8785595_8785656 100.00 NA NA NA NA NA NA 83.33 100.00 NA NA NA NA NA NA 100.00 NA 90.00 NA 100.00 NA 92.59 100.00 NA NA NA NA NA NA NA NA NA 83.33 100.00 NA NA 81.82 NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 100.00 NA 81.82 NA NA 100.00 NA 100.00 NA K alternative_first_exon CG4050 chr2R - chr2R_17014639_17015906 chr2R_17014639_17014906 chr2R_17015907_17015995 chr2R_17014907_17015065 chr2R_17013411_17014638 0.00 3.33 0.00 0.00 0.00 0.00 1.75 0.00 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.33 0.00 0.00 3.70 2.44 3.12 3.70 4.76 0.00 2.33 0.00 6.25 0.00 0.00 0.00 0.00 0.00 3.45 0.00 NA 1.59 0.00 2.70 NA 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 NA 2.17 6.67 0.00 NA K alternative_first_exon CG9003 chr2R - chr2R_7532470_7532914;chr2R_7532470_7538319 chr2R_7532470_7535850 chr2R_7538320_7538729 chr2R_7535851_7535985 chr2R_7532353_7532469 0.00 0.00 0.00 0.00 0.00 3.70 1.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_first_exon SelR chr3R - chr3R_6692683_6694160 chr3R_6692683_6693693 chr3R_6694161_6694379 chr3R_6693694_6694007 chr3R_6692531_6692682 10.81 6.90 9.09 12.50 10.00 10.00 25.00 8.82 6.25 10.00 20.00 7.32 5.26 12.00 9.68 5.88 5.26 23.53 12.00 34.00 11.76 15.00 7.69 11.43 9.09 14.29 8.33 11.11 27.27 14.29 22.58 15.38 26.67 10.81 11.76 5.00 10.00 11.11 11.11 10.00 27.27 12.77 14.29 6.67 20.00 9.09 8.33 17.39 10.20 6.06 9.38 11.11 7.69 4.76 9.38 12.90 6.25 12.82 K alternative_first_exon ps chr3R + chr3R_5257591_5257750;chr3R_5245770_5257750;chr3R_5243723_5257750 chr3R_5254375_5257750 chr3R_5245317_5245769;chr3R_5243664_5243722 chr3R_5254284_5254374 chr3R_5257751_5258561 26.09 32.26 27.08 19.79 28.12 18.75 24.75 22.41 22.38 21.74 39.02 26.67 24.24 19.64 34.69 25.25 24.00 31.91 26.32 22.40 36.17 20.41 33.82 32.43 26.32 16.28 26.09 32.00 25.93 12.82 25.00 11.11 16.67 22.43 27.78 36.36 27.12 35.71 37.14 27.91 20.00 25.81 15.56 26.23 27.27 23.53 24.00 25.00 25.45 33.33 32.08 29.03 28.57 28.57 29.63 25.00 35.29 23.08 K alternative_first_exon CG34310,cup chr2L + chr2L_6670514_6674300 chr2L_6674229_6674300 chr2L_6669764_6670513 chr2L_6673963_6674228 chr2L_6674301_6674525 37.88 28.28 41.89 44.54 33.90 38.57 45.54 41.46 40.34 23.91 40.32 36.02 37.88 42.03 39.56 47.71 34.69 39.39 41.56 33.16 40.30 35.34 29.53 31.50 28.41 40.00 33.04 30.49 32.98 32.22 44.83 36.26 42.28 40.91 35.21 31.91 20.14 26.85 18.66 25.17 44.09 38.41 40.98 40.22 37.90 41.32 30.70 32.00 39.13 30.77 24.37 35.53 45.56 29.41 42.22 36.36 45.83 60.26 K alternative_first_exon CG5004 chrX + chrX_17019978_17020033,chrX_17019127_17020033,chrX_17019966_17020033,chrX_17019650_17020033;chrX_17019051_17020033 chrX_17019573_17020033 chrX_17018936_17019050 chrX_17019496_17019572 chrX_17020034_17020118 5.43 5.88 5.26 8.33 6.25 4.00 15.62 6.15 5.41 0.00 6.45 5.56 3.12 3.45 2.78 15.15 3.33 9.09 12.12 4.17 6.25 8.51 1.79 2.13 2.27 8.33 4.76 7.50 11.54 5.88 5.88 0.00 6.06 5.45 0.00 5.13 4.29 4.44 3.39 4.55 NA 6.15 5.88 0.00 3.45 12.50 9.09 12.00 9.09 6.90 6.12 3.45 0.00 0.00 7.14 0.00 0.00 4.76 K alternative_first_exon CG8547 chr2R - chr2R_10151721_10155203 chr2R_10151721_10154843 chr2R_10155204_10155419 chr2R_10154844_10155124 chr2R_10151634_10151720 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 4.35 0.00 0.00 6.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 NA 14.29 0.00 0.00 NA 0.00 0.00 0.00 10.00 0.00 0.00 5.26 4.17 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA K alternative_first_exon fbl chr3L + chr3L_20381467_20381768,chr3L_20381664_20381768,chr3L_20381129_20381768;chr3L_20379955_20381768;chr3L_20381102_20381768;chr3L_20377959_20381768 chr3L_20381668_20381768 chr3L_20379392_20379954;chr3L_20380716_20381101;chr3L_20377531_20377958 chr3L_20381514_20381667 chr3L_20381769_20381947 0.00 0.00 0.00 2.63 1.75 0.00 1.19 0.93 0.62 0.00 0.00 0.00 1.75 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_first_exon chb chr3L + chr3L_21170546_21171196;chr3L_21166146_21171196;chr3L_21169629_21171196 chr3L_21171043_21171196 chr3L_21165953_21166145;chr3L_21168900_21169628 chr3L_21170961_21171042 chr3L_21171197_21176378 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon Pfrx chrX + chrX_19400112_19400518;chrX_19389585_19400518;chrX_19392914_19400518;chrX_19398571_19400518;chrX_19400271_19400518 chrX_19390821_19400518 chrX_19389538_19389584;chrX_19392406_19392913;chrX_19398456_19398570;chrX_19399962_19400270 chrX_19390713_19390820 chrX_19400519_19402937 0.00 NA 12.50 25.00 NA NA 25.00 0.00 0.00 0.00 NA 0.00 NA 20.00 25.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 20.00 NA NA 16.67 0.00 NA NA NA NA 14.29 25.00 0.00 0.00 0.00 25.00 11.11 10.00 NA 0.00 0.00 6.25 20.00 NA 0.00 10.00 8.33 14.29 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 K alternative_first_exon Rab5 chr2L - chr2L_2361586_2361738,chr2L_2361586_2362590,chr2L_2361586_2362869,chr2L_2361586_2364302,chr2L_2361586_2364480,chr2L_2361586_2364594,chr2L_2361586_2364836;chr2L_2361586_2364889;chr2L_2361586_2362674;chr2L_2361586_2365060;chr2L_2361586_2363404 chr2L_2361586_2364640,chr2L_2361586_2364312 chr2L_2364890_2364952;chr2L_2362675_2362761;chr2L_2365061_2365362;chr2L_2363405_2363501 chr2L_2364641_2364697 chr2L_2361160_2361585 28.99 32.65 29.57 32.02 23.58 28.26 22.80 26.24 24.40 34.55 23.53 27.80 30.77 29.20 31.39 26.70 25.86 24.55 23.78 27.73 23.01 49.61 26.55 28.87 26.83 28.95 25.64 43.33 51.72 55.14 22.14 60.87 65.90 28.70 37.80 42.35 24.79 23.08 20.34 52.59 57.29 30.61 22.34 45.37 53.39 50.60 41.28 58.33 26.64 22.47 22.11 29.21 41.94 28.99 24.09 31.31 29.01 68.00 K alternative_first_exon Oscp chr3R + chr3R_11091413_11092154 chr3R_11092093_11092154 chr3R_11091298_11091412 chr3R_11091489_11092092 chr3R_11092155_11092412 100.00 100.00 100.00 99.78 100.00 100.00 100.00 99.81 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.71 99.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.77 100.00 100.00 100.00 K alternative_first_exon crol chr2L - chr2L_11806158_11809125 chr2L_11806158_11808013 chr2L_11809126_11809433 chr2L_11808014_11808972 chr2L_11806048_11806157 13.25 11.58 11.21 15.29 11.59 13.25 18.99 9.92 15.68 15.62 8.47 14.37 16.92 14.29 12.50 12.63 10.39 12.16 16.25 9.84 12.50 22.36 16.00 17.21 22.97 16.87 15.15 24.66 16.67 11.43 13.86 12.73 10.94 11.11 12.50 19.32 12.96 16.49 16.53 11.00 11.94 12.85 13.16 12.50 13.24 9.89 16.67 10.00 13.41 18.31 17.80 13.54 12.90 18.18 12.28 16.98 16.22 7.76 K alternative_first_exon Cul-3 chr2L - chr2L_15269205_15270904 chr2L_15269205_15269373 chr2L_15270905_15271143 chr2L_15269374_15270324 chr2L_15268821_15269204 1.64 1.79 1.72 1.14 2.04 2.08 0.99 1.15 0.77 6.06 2.17 0.96 1.75 1.69 1.64 1.19 0.00 0.00 1.54 0.93 2.17 11.54 0.92 1.35 4.26 1.67 2.33 5.36 3.64 2.17 0.00 0.00 4.17 0.00 0.00 1.85 1.43 1.75 1.54 2.47 3.03 0.88 0.00 1.52 3.03 2.27 0.00 3.33 0.98 1.75 1.18 0.00 3.12 0.00 1.49 2.70 2.17 0.00 K alternative_first_exon CG5315 chr3R - chr3R_18371506_18372433 chr3R_18371506_18371597 chr3R_18372434_18372920 chr3R_18371598_18371753 chr3R_18371407_18371505 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.55 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 1.41 0.78 0.00 0.00 0.00 0.99 0.00 0.00 0.00 K alternative_first_exon CG34417 chrX + chrX_6437194_6445938 chrX_6440506_6445938 chrX_6437126_6437193 chrX_6440171_6440505 chrX_6445939_6446326 22.22 13.33 13.33 33.33 NA 9.09 36.36 23.81 38.46 NA NA 26.32 NA 22.22 6.67 31.82 NA 27.27 25.00 8.70 18.18 33.33 13.33 10.00 22.22 NA 16.67 NA NA NA 18.75 NA 8.33 27.27 18.75 NA 14.29 NA 5.56 15.79 NA 28.00 30.00 9.09 21.43 35.71 12.50 31.25 36.00 25.00 19.05 22.22 NA NA 23.53 7.69 NA 25.00 K alternative_first_exon CaMKII chr4 - chr4_1071236_1071307,chr4_1071236_1071315,chr4_1071236_1071813,chr4_1071236_1072054;chr4_1071236_1071968;chr4_1071236_1071884,chr4_1071236_1071319 chr4_1071236_1074123 chr4_1071969_1071994;chr4_1071885_1071943 chr4_1074124_1074329 chr4_1071081_1071235 0.00 0.00 4.00 1.67 NA 5.88 2.27 0.00 2.17 NA 0.00 0.00 0.00 3.57 5.00 1.37 6.25 NA 2.86 2.86 0.00 0.00 6.25 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 3.33 NA 0.00 NA NA NA 4.76 0.00 2.70 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 8.33 10.00 NA NA 0.00 NA 0.00 0.00 K alternative_first_exon Ald chr3R - chr3R_22083764_22086879;chr3R_22083764_22086875;chr3R_22083764_22085523;chr3R_22083764_22084708 chr3R_22083764_22087057 chr3R_22086876_22087046;chr3R_22085524_22085554;chr3R_22084709_22084996 chr3R_22087058_22087313 chr3R_22082947_22083763 62.31 77.14 56.38 60.94 62.68 62.31 62.57 58.24 65.29 64.78 57.98 65.13 56.82 72.43 60.00 65.89 60.99 64.05 58.17 57.56 62.04 44.86 86.99 89.30 83.23 60.61 81.22 55.50 43.29 36.07 66.91 35.91 18.85 61.74 54.46 47.62 90.57 91.03 89.82 48.52 32.45 61.26 63.13 52.62 34.19 44.07 88.28 34.22 66.76 87.79 87.88 88.20 75.35 84.55 66.67 88.57 89.81 29.95 K alternative_first_exon bin3 chr2R + chr2R_2117163_2120770;chr2R_2102257_2120770 chr2R_2108782_2120770 chr2R_2102078_2102256 chr2R_2108544_2108781 chr2R_2120771_2121812 81.25 81.48 87.10 84.44 90.48 81.08 85.71 80.65 86.11 77.78 84.62 81.13 83.78 85.29 73.33 77.94 87.50 82.14 83.78 84.72 71.43 76.47 82.35 82.61 69.23 88.00 80.95 90.91 85.00 82.86 82.93 81.25 77.14 81.25 68.00 82.14 85.71 80.00 81.25 76.47 83.33 80.36 79.31 80.00 70.00 75.00 83.33 73.08 80.28 85.00 87.18 85.19 65.22 76.92 73.81 75.00 71.43 82.76 K alternative_first_exon Doa chr3R + chr3R_24714257_24715487 chr3R_24715081_24715487 chr3R_24713799_24714256 chr3R_24714743_24715080 chr3R_24715488_24715606 43.82 44.62 47.54 51.11 38.64 45.28 57.89 53.41 39.09 33.33 52.50 42.00 50.00 46.94 42.62 58.42 42.31 42.86 47.17 46.21 41.82 67.65 42.34 37.80 41.51 44.64 48.84 68.18 45.61 42.65 51.72 38.46 41.54 43.68 45.45 44.44 37.00 31.58 43.82 41.84 56.67 40.34 48.00 43.75 37.78 42.55 47.06 43.06 43.00 47.46 45.78 37.74 38.64 50.00 46.55 42.86 51.11 38.46 K alternative_first_exon CG8389 chr2R + chr2R_11899128_11899459;chr2R_11895993_11899459 chr2R_11899344_11899459 chr2R_11895877_11895992 chr2R_11899196_11899343 chr2R_11899460_11899575 100.00 90.00 100.00 90.91 NA 88.89 93.75 100.00 100.00 NA 100.00 95.65 100.00 100.00 100.00 92.86 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 87.50 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 83.33 100.00 92.31 93.75 NA 92.86 100.00 NA 100.00 87.50 93.33 87.50 100.00 100.00 95.83 100.00 NA 100.00 100.00 92.31 100.00 NA K alternative_first_exon spi chr2L - chr2L_19571768_19571881,chr2L_19571768_19572142,chr2L_19571768_19572503,chr2L_19571768_19575517,chr2L_19571768_19577173;chr2L_19571768_19577185;chr2L_19571768_19572499 chr2L_19571768_19575534 chr2L_19577186_19577324;chr2L_19572500_19572610 chr2L_19575535_19575587 chr2L_19571572_19571767 0.00 0.00 0.00 0.00 1.41 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.00 0.22 0.00 0.00 0.00 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 0.00 0.00 0.00 0.00 1.12 0.00 0.00 0.59 0.00 0.00 0.00 0.00 1.15 0.00 0.37 1.12 0.00 0.00 0.00 0.00 1.22 0.48 0.60 0.00 0.90 0.00 K alternative_first_exon Hmgs chr2R + chr2R_12224952_12226951,chr2R_12224482_12226951;chr2R_12224369_12226951;chr2R_12226703_12226951 chr2R_12225927_12226951,chr2R_12225942_12226951 chr2R_12223595_12224368;chr2R_12226622_12226702 chr2R_12225809_12225926 chr2R_12226952_12228760 4.55 4.55 4.17 5.26 0.00 4.76 4.08 4.26 4.69 0.00 12.50 4.92 5.56 8.00 7.69 2.94 0.00 4.55 7.41 4.00 6.25 5.17 3.12 0.00 0.00 0.00 5.71 3.45 5.56 4.00 6.25 4.55 5.13 4.17 0.00 4.17 3.45 0.00 6.67 4.76 3.85 5.00 4.55 8.16 8.33 6.82 6.45 5.77 6.15 6.67 8.82 7.14 0.00 5.26 2.86 0.00 0.00 3.77 K alternative_first_exon CG1358 chr2R - chr2R_3493750_3495926;chr2R_3493750_3501438;chr2R_3493750_3501965 chr2R_3493750_3507837 chr2R_3495927_3495958;chr2R_3501439_3501727;chr2R_3501966_3502040 chr2R_3507838_3507944 chr2R_3493449_3493749 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon CG12360 chr3R - chr3R_8855877_8856135 chr3R_8855877_8855943 chr3R_8856136_8856372 chr3R_8855944_8856018 chr3R_8855641_8855876 1.69 0.00 5.41 3.88 4.44 5.77 10.58 0.77 2.17 0.00 2.04 1.68 1.67 0.00 0.00 2.78 4.08 0.00 1.04 1.75 2.00 16.67 1.16 1.54 4.65 3.33 1.41 0.00 0.00 0.00 3.66 3.12 0.00 1.69 1.75 3.51 3.85 4.65 2.22 1.02 4.76 1.65 0.00 1.56 0.00 0.00 0.00 1.59 1.63 2.63 0.00 0.00 0.00 2.94 3.49 2.00 4.26 1.85 K alternative_first_exon CG10543 chr2R + chr2R_16886409_16888516,chr2R_16887460_16888516;chr2R_16884434_16888516 chr2R_16888336_16888516 chr2R_16883790_16884433 chr2R_16888306_16888335 chr2R_16888517_16889931 4.00 3.45 3.23 0.00 0.00 4.17 3.51 1.45 2.25 5.88 7.41 1.61 2.22 2.50 2.63 5.41 5.56 3.57 0.00 1.49 0.00 5.41 5.88 2.94 4.35 2.70 5.71 4.76 3.85 5.88 5.56 5.26 4.88 1.37 4.35 0.00 6.90 9.09 7.69 7.55 0.00 2.82 0.00 7.69 6.67 0.00 4.00 4.08 5.33 0.00 2.22 4.00 8.70 7.14 2.27 4.76 0.00 5.41 K alternative_first_exon Treh chr2R + chr2R_16961618_16972702;chr2R_16972204_16972702 chr2R_16964645_16972702 chr2R_16961530_16961617;chr2R_16971846_16972203 chr2R_16964100_16964644 chr2R_16972703_16972892 87.50 83.33 95.65 92.59 82.35 88.89 88.37 88.46 85.96 80.00 86.67 87.50 86.67 87.50 83.33 91.89 88.89 88.89 92.31 86.44 94.44 77.42 82.86 86.11 92.00 85.00 83.87 81.25 84.00 92.31 92.31 94.12 93.75 87.23 86.96 92.59 84.00 85.00 88.46 80.00 92.00 87.76 90.48 75.00 85.71 86.49 88.89 93.18 81.82 85.71 88.89 87.50 84.21 93.33 82.14 90.48 83.33 97.30 K alternative_first_exon smg chr3L - chr3L_8988666_8990678 chr3L_8988666_8989953 chr3L_8990679_8991089 chr3L_8989954_8990346 chr3L_8986199_8988665 4.88 9.09 10.00 5.56 0.00 0.00 0.00 0.00 3.33 NA 14.29 4.55 0.00 7.69 8.33 5.00 0.00 11.11 0.00 4.35 10.00 11.11 6.67 10.00 0.00 0.00 11.11 0.00 0.00 7.14 0.00 0.00 10.00 4.55 0.00 0.00 10.00 14.29 12.50 9.09 0.00 5.00 0.00 11.11 NA 16.67 0.00 11.11 4.76 NA 15.38 0.00 NA NA 7.14 0.00 0.00 16.67 K alternative_first_exon Cg25C chr2L + chr2L_5029637_5030136 chr2L_5029747_5030136,chr2L_5029811_5030136 chr2L_5029615_5029636 chr2L_5029665_5029746 chr2L_5030137_5030237 79.66 88.89 74.19 67.50 60.00 54.55 90.91 78.33 77.46 84.62 91.18 87.10 81.25 80.00 72.50 84.62 65.22 60.61 66.67 78.75 81.63 70.00 97.37 94.29 100.00 73.33 87.50 83.33 86.67 NA 47.22 52.94 79.31 65.08 83.33 91.30 96.97 95.65 96.00 69.77 83.33 53.06 76.92 76.92 62.50 78.95 90.00 66.20 62.22 94.12 96.97 100.00 48.89 100.00 53.70 95.24 100.00 65.00 K alternative_first_exon Utx chr2L - chr2L_10276568_10276811,chr2L_10276568_10277096,chr2L_10276568_10277116;chr2L_10276568_10277813 chr2L_10276568_10277406,chr2L_10276568_10277394 chr2L_10277814_10277925 chr2L_10277407_10277548 chr2L_10276392_10276567 20.00 NA 9.09 17.65 NA NA 20.00 9.52 27.27 NA NA 20.00 16.67 27.27 20.00 35.00 37.50 NA 16.67 27.27 NA NA 12.50 NA NA 8.33 NA NA NA NA 22.22 NA NA 38.89 NA NA NA NA NA NA NA 18.75 33.33 NA NA NA NA NA 15.79 NA NA 25.00 NA NA 22.22 NA NA NA K alternative_first_exon CG18135 chr3L - chr3L_18985826_18988530;chr3L_18985826_18991100 chr3L_18985826_18986825 chr3L_18988531_18988907;chr3L_18991101_18991383 chr3L_18986826_18987093 chr3L_18983122_18985825 20.83 21.43 14.29 12.50 0.00 18.18 19.23 7.14 21.21 33.33 22.22 20.83 7.69 9.09 20.00 15.00 20.00 12.50 10.00 23.08 12.50 33.33 27.59 33.33 25.00 9.09 15.79 20.00 28.57 31.25 6.67 25.00 40.91 9.52 27.27 40.00 22.73 25.00 35.71 38.46 17.65 20.83 20.00 25.00 23.08 21.05 16.67 46.67 17.14 15.79 27.59 28.57 27.78 20.00 8.33 18.18 18.52 28.57 K alternative_first_exon CG4004 chrX + chrX_12638983_12640901 chrX_12639901_12640901 chrX_12638499_12638982 chrX_12639391_12639900 chrX_12640902_12641794 36.67 28.57 28.57 26.32 31.25 26.67 36.00 37.70 32.31 37.04 36.67 38.00 37.50 33.33 32.26 34.78 35.71 32.00 30.56 36.78 30.77 44.90 38.60 40.48 40.74 37.50 44.90 50.00 46.34 41.03 36.36 36.67 43.18 34.55 32.43 41.67 44.64 31.43 39.58 40.62 41.03 32.26 34.62 33.93 45.95 40.82 37.50 44.44 35.00 42.62 37.74 41.94 32.26 34.48 34.04 40.54 29.09 31.48 K alternative_first_exon Lk6 chr3R - chr3R_7582215_7589205 chr3R_7582215_7585275 chr3R_7589206_7590179 chr3R_7585276_7585800 chr3R_7582035_7582214 12.10 11.17 11.83 16.49 11.18 11.11 12.73 15.89 13.22 6.64 13.76 13.26 19.06 13.66 13.83 16.50 13.39 17.66 12.10 13.74 13.17 12.41 8.55 8.82 11.88 14.37 12.79 8.44 11.55 8.24 9.91 7.06 6.67 12.94 10.00 12.86 8.94 8.60 8.44 8.39 7.98 13.03 14.79 7.01 7.31 8.47 14.14 8.44 18.03 9.09 12.50 11.36 13.37 7.82 14.18 10.80 16.84 13.80 K alternative_first_exon Sac1 chr3L + chr3L_1247948_1248255 chr3L_1248189_1248255 chr3L_1247817_1247947 chr3L_1248019_1248188 chr3L_1248256_1250451 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.99 K alternative_first_exon NTPase chr2L - chr2L_2882834_2884356,chr2L_2882834_2884796;chr2L_2882834_2885632;chr2L_2882834_2882919 chr2L_2882834_2884992 chr2L_2885633_2885850;chr2L_2882920_2883113 chr2L_2884993_2885208 chr2L_2882692_2882833 95.02 97.12 95.54 92.97 94.59 92.37 94.24 94.59 95.02 95.52 94.96 95.73 91.67 95.76 94.56 95.00 95.54 92.31 94.78 95.31 95.20 91.14 96.70 97.96 94.41 93.38 96.48 95.12 88.44 92.21 96.57 95.83 94.31 94.92 97.81 91.03 93.87 96.03 97.44 94.51 95.31 96.44 95.05 97.66 94.30 95.26 97.71 95.18 94.37 96.30 94.68 92.62 94.05 98.18 94.56 96.64 95.35 91.10 K alternative_first_exon Treh chr2R + chr2R_16961618_16972702;chr2R_16964645_16972702 chr2R_16972204_16972702 chr2R_16961530_16961617;chr2R_16964100_16964644 chr2R_16971846_16972203 chr2R_16972703_16972892 12.50 16.67 4.35 7.41 17.65 11.11 11.63 11.54 14.04 20.00 13.33 10.42 13.33 12.50 13.33 8.11 11.11 11.11 7.69 13.56 5.56 22.58 17.14 13.89 8.00 15.00 16.13 18.75 16.00 7.69 7.69 5.88 6.25 12.77 13.04 7.41 16.00 15.00 11.54 20.00 8.00 12.24 9.52 25.00 14.29 13.51 11.11 6.82 18.18 14.29 11.11 12.50 15.79 6.67 17.86 9.52 16.67 2.70 K alternative_first_exon Su(var)2-10 chr2R + chr2R_5003957_5004682 chr2R_5004357_5004682 chr2R_5003631_5003956 chr2R_5004125_5004356 chr2R_5004683_5005357 36.46 34.78 39.13 40.59 38.60 36.00 53.49 44.23 44.52 30.91 25.93 35.34 40.30 43.75 36.90 50.89 42.62 39.06 45.24 38.64 36.21 37.04 33.33 32.61 36.84 37.84 34.74 40.00 32.73 31.88 47.89 30.00 25.93 49.00 35.21 30.00 28.09 29.69 27.85 35.00 38.10 39.39 41.27 39.47 26.42 28.95 32.00 19.78 39.31 32.89 36.46 34.72 39.22 34.88 44.71 36.00 43.90 28.75 K alternative_first_exon dnc chrX + chrX_3208642_3215073;chrX_3175189_3215073;chrX_3140719_3215073 chrX_3189487_3215073 chrX_3173980_3175188;chrX_3140328_3140718 chrX_3189314_3189486 chrX_3215074_3215250 2.44 0.00 2.38 2.94 3.12 2.86 4.00 6.25 2.30 0.00 0.00 1.75 6.25 3.12 2.27 2.78 3.03 3.12 3.23 1.37 0.00 0.00 3.33 0.00 6.67 3.45 5.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 3.23 5.00 0.00 0.00 10.00 2.47 3.03 6.25 5.26 0.00 10.53 0.00 2.44 5.88 3.45 0.00 6.25 5.26 2.44 0.00 4.55 0.00 K alternative_first_exon stet chr3L - chr3L_1477288_1487758 chr3L_1477288_1478771 chr3L_1487759_1487935 chr3L_1478772_1478931 chr3L_1477057_1477287 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon KrT95D chr3R - chr3R_19831718_19838704 chr3R_19831718_19832049 chr3R_19838705_19838952 chr3R_19832050_19832300 chr3R_19831410_19831717 26.23 24.74 20.62 28.46 15.91 22.92 38.56 30.94 29.66 31.03 20.24 28.24 26.92 31.91 17.14 43.75 28.57 26.58 24.51 36.10 15.66 30.92 22.87 16.06 21.01 23.26 12.78 22.76 23.31 27.70 32.52 37.68 30.64 28.86 27.64 22.76 16.87 16.67 6.21 32.23 37.29 23.37 22.08 29.03 28.00 28.86 25.27 29.01 29.89 22.73 23.08 20.65 24.56 26.56 23.42 19.51 26.23 36.56 K alternative_first_exon CG42668 chr3R + chr3R_16146174_16147197,chr3R_16146597_16147197 chr3R_16147136_16147197 chr3R_16145937_16146173 chr3R_16146925_16147135 chr3R_16147198_16147358 2.82 2.82 1.18 3.93 2.56 1.95 7.26 3.63 4.19 1.64 3.67 3.85 5.54 4.56 2.69 11.38 5.19 2.15 5.09 2.87 2.78 1.23 2.38 3.08 2.86 4.54 3.92 1.22 2.87 1.19 3.54 2.83 1.47 5.57 2.33 2.09 1.19 2.01 1.35 2.09 2.16 3.10 5.99 4.45 1.01 2.54 3.23 0.90 3.79 1.39 2.04 3.94 1.29 2.15 2.93 2.46 3.47 1.36 K alternative_first_exon CG32425 chr3L + chr3L_20490526_20505036 chr3L_20503880_20505036 chr3L_20490412_20490525 chr3L_20503130_20503879 chr3L_20505037_20505485 96.23 98.57 96.88 96.70 100.00 98.08 95.74 95.83 96.33 96.23 94.44 96.23 92.68 97.78 93.44 94.34 97.56 97.44 95.56 97.83 95.45 90.67 97.20 96.30 93.62 88.46 98.39 98.36 97.26 97.01 96.43 94.64 97.73 95.00 98.36 98.28 94.95 97.22 95.70 94.62 98.57 95.90 95.56 94.52 94.23 94.95 97.26 95.04 95.24 94.81 95.56 98.00 97.65 97.14 94.12 96.10 97.40 96.35 K alternative_first_exon pico chrX - chrX_19730788_19742099;chrX_19730788_19744895 chrX_19730788_19743974 chrX_19742100_19742536;chrX_19744896_19746084 chrX_19743975_19744083 chrX_19729677_19730787 0.00 0.00 0.00 0.72 0.00 1.12 0.89 1.32 0.43 0.00 0.00 0.59 0.00 0.00 0.89 1.42 1.39 0.00 0.00 0.45 0.00 0.00 0.60 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.95 0.00 0.42 1.21 0.00 0.85 0.00 0.92 0.74 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.50 1.96 0.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon tkv chr2L - chr2L_5241507_5242385;chr2L_5241507_5271265 chr2L_5241507_5242218 chr2L_5271266_5271353 chr2L_5242219_5242606 chr2L_5241369_5241506 20.00 15.38 16.67 18.75 NA 11.11 44.44 15.38 28.57 13.33 22.22 16.67 11.11 33.33 33.33 16.67 20.00 NA 25.00 23.53 11.11 9.09 31.25 29.41 17.65 11.11 40.00 21.43 13.33 25.00 14.29 20.00 13.33 23.53 18.18 13.33 21.74 18.18 20.00 21.05 8.33 23.53 22.22 20.00 NA 11.76 20.00 8.00 13.04 23.53 40.00 31.25 15.38 NA 15.38 30.77 37.50 10.53 K alternative_first_exon CG33232 chr3L + chr3L_2478728_2484563;chr3L_2483377_2484563 chr3L_2467270_2484563 chr3L_2478644_2478727;chr3L_2483281_2483376 chr3L_2466903_2467269 chr3L_2484564_2484837 100.00 100.00 100.00 81.82 NA 83.33 100.00 100.00 93.75 NA 100.00 100.00 85.71 88.89 100.00 100.00 100.00 83.33 91.67 75.00 80.00 NA 100.00 NA NA 100.00 80.00 NA NA NA 100.00 NA NA 91.67 100.00 80.00 100.00 NA 100.00 85.71 NA 92.86 100.00 100.00 NA NA NA 100.00 100.00 66.67 100.00 100.00 NA NA 100.00 NA NA NA K alternative_first_exon Dgp-1 chr2R - chr2R_14058825_14059942 chr2R_14058825_14058897 chr2R_14059943_14060112 chr2R_14058898_14058956 chr2R_14058473_14058824 86.78 77.61 89.42 92.29 86.75 83.87 91.84 85.84 83.92 96.09 91.98 89.74 86.32 85.71 88.28 77.70 90.08 86.78 87.13 88.43 92.68 89.33 87.41 88.03 86.23 89.36 83.17 82.46 87.62 86.43 96.17 86.98 90.89 88.30 79.45 85.22 91.30 87.16 91.63 87.76 86.32 87.36 83.51 80.95 92.07 82.53 75.38 85.76 85.71 90.51 79.27 92.55 70.27 65.71 84.52 84.52 60.00 72.67 K alternative_first_exon Cyt-b5 chr2R + chr2R_3421858_3422836;chr2R_3421236_3422836 chr2R_3422601_3422836 chr2R_3421013_3421235 chr2R_3422514_3422600 chr2R_3422837_3423441 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.17 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon atl chr3R + chr3R_20451677_20457504,chr3R_20451937_20457504,chr3R_20456279_20457504,chr3R_20457097_20457504;chr3R_20451535_20457504 chr3R_20456473_20457504 chr3R_20451397_20451534 chr3R_20456018_20456472 chr3R_20457505_20457813 21.43 26.32 18.75 20.41 21.05 17.39 17.19 17.86 14.06 23.08 18.18 23.91 16.67 20.59 17.24 15.00 24.14 16.00 16.67 12.68 21.43 24.24 25.71 30.43 22.22 17.86 26.32 30.43 16.67 20.69 19.51 22.22 27.59 23.53 29.41 35.00 30.43 16.67 29.41 23.26 26.32 17.86 21.74 18.92 10.53 29.17 19.05 21.88 20.00 30.00 26.92 19.05 25.00 21.43 18.18 23.53 7.69 26.92 K alternative_first_exon CG32017 chr4 - chr4_1164740_1167095 chr4_1164740_1165591 chr4_1167096_1167149 chr4_1165592_1165726 chr4_1164611_1164739 15.38 NA NA NA NA NA 12.50 23.08 13.04 NA NA 15.38 NA NA NA 26.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 18.18 NA NA NA NA NA 0.00 NA 6.25 NA NA NA NA NA NA 23.53 NA NA NA NA NA NA NA NA NA K alternative_first_exon boi chrX - chrX_2341631_2344702 chrX_2341631_2341689 chrX_2344703_2344871 chrX_2341690_2341921 chrX_2340923_2341630 1.67 1.52 2.02 1.61 1.19 1.11 2.08 0.59 1.54 0.00 1.67 1.31 1.67 1.16 1.67 1.71 1.32 0.00 1.02 0.97 1.39 4.00 1.96 2.50 0.00 1.47 2.08 14.29 0.00 1.79 2.63 2.78 1.96 1.44 2.94 2.56 1.96 2.70 1.64 2.86 2.56 2.30 0.00 4.35 2.27 1.39 5.71 0.83 1.68 5.56 2.27 3.03 15.38 0.00 0.77 6.06 0.00 0.00 K alternative_first_exon Asator chr4 - chr4_502331_505835;chr4_502331_504126 chr4_502331_502436 chr4_504127_504406 chr4_502437_502562 chr4_501835_502330 90.00 NA NA 88.89 NA NA 100.00 90.00 NA NA NA 81.82 NA NA NA 88.89 NA NA NA 90.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA NA NA K alternative_first_exon alt chr3R - chr3R_13503901_13504925,chr3R_13503901_13505368;chr3R_13503901_13504865;chr3R_13503901_13508180,chr3R_13503901_13508178,chr3R_13503901_13508123;chr3R_13503901_13504373 chr3R_13503901_13507816 chr3R_13504866_13505009;chr3R_13508181_13508234;chr3R_13504374_13504425 chr3R_13507817_13507965 chr3R_13502559_13503900 7.85 5.13 6.35 3.03 2.08 1.85 6.85 3.12 4.52 16.67 17.39 2.88 2.08 2.90 4.35 5.41 7.27 1.52 5.56 5.80 13.73 10.53 13.79 9.52 10.00 4.00 19.23 12.00 35.29 21.74 8.33 21.43 18.18 5.31 12.50 26.67 10.00 11.11 13.64 9.38 7.14 4.90 3.45 10.53 11.76 26.67 16.67 23.53 6.37 8.00 7.41 5.00 11.11 NA 7.25 7.69 2.86 12.12 K alternative_first_exon CG14619 chrX + chrX_21860097_21867984 chrX_21867359_21867984 chrX_21859450_21860096 chrX_21865703_21867358 35.71 23.81 27.78 58.82 15.79 36.36 33.33 17.65 50.00 27.27 22.22 33.33 62.50 37.50 42.86 54.55 41.67 57.14 42.86 35.71 37.50 29.63 11.11 38.46 23.53 42.86 30.43 9.30 25.00 39.13 50.00 60.00 58.62 33.33 30.77 50.00 27.59 18.18 30.00 53.85 50.00 36.00 27.78 40.00 15.38 50.00 30.77 50.00 25.81 40.00 54.55 25.00 44.44 12.50 11.11 23.08 20.00 41.18 K alternative_first_exon CG32549 chrX - chrX_18286944_18301829 chrX_18286944_18298017 chrX_18301830_18301918 chrX_18298018_18298595 chrX_18286870_18286943 98.95 98.41 98.68 98.72 98.39 98.55 98.26 98.57 98.60 99.18 99.13 99.27 100.00 98.44 98.76 98.89 100.00 99.15 98.61 98.74 99.15 98.91 99.08 98.95 98.79 100.00 99.17 99.05 100.00 98.98 98.80 96.88 98.52 99.12 98.77 98.95 98.69 99.51 99.21 99.60 98.75 99.38 99.04 98.56 99.42 98.50 98.22 97.73 99.28 99.00 99.21 99.32 96.72 98.76 99.34 99.44 99.12 96.75 K alternative_first_exon kay chr3R + chr3R_25607566_25617114,chr3R_25607413_25617114,chr3R_25617044_25617114,chr3R_25615618_25617114,chr3R_25616711_25617114,chr3R_25593310_25617114,chr3R_25616533_25617114;chr3R_25616577_25617114;chr3R_25608870_25617114 chr3R_25599544_25617114 chr3R_25614658_25616576;chr3R_25608333_25608869 chr3R_25598616_25599543 chr3R_25617115_25617442 18.06 15.99 17.58 18.27 15.75 17.91 14.88 14.68 15.44 18.06 14.38 17.21 16.16 16.27 17.29 14.04 17.22 15.16 16.20 15.91 13.04 28.85 16.56 18.08 19.95 22.15 18.51 20.51 33.00 25.71 19.12 26.83 33.12 14.92 17.45 25.85 18.48 17.10 19.80 24.00 26.80 16.89 15.99 17.86 26.97 22.40 18.83 31.46 18.95 21.37 16.38 16.02 32.29 18.27 17.94 19.21 24.29 42.03 K alternative_first_exon CG17159,CG17162 chrXHet - chrXHet_69232_75198;chrXHet_69232_71032;chrXHet_69232_75524 chrXHet_69232_75430,chrXHet_69232_75279,chrXHet_69232_75250 chrXHet_71033_71449;chrXHet_75525_75553 chrXHet_75431_75487 chrXHet_69195_69231 44.44 35.29 50.00 55.56 39.13 47.62 40.91 45.95 46.15 70.00 76.19 34.38 52.94 36.36 41.38 31.71 42.11 66.67 36.00 38.33 78.57 10.00 44.44 48.00 50.00 39.02 39.13 42.86 50.00 31.58 42.31 63.64 37.50 50.00 38.10 21.21 60.00 45.83 55.88 37.50 22.22 38.30 47.06 45.45 27.27 33.33 54.55 27.27 42.37 55.56 50.00 56.52 41.67 50.00 48.57 50.00 50.00 30.77 K alternative_first_exon Lis-1 chr2R + chr2R_12066878_12069485,chr2R_12069171_12069485;chr2R_12066383_12069485,chr2R_12066458_12069485 chr2R_12069311_12069485 chr2R_12066309_12066382 chr2R_12068754_12069310 chr2R_12069486_12069595 9.09 3.33 15.79 6.25 9.52 11.11 6.98 7.32 8.96 9.09 16.67 10.91 11.11 6.67 8.57 4.17 7.14 5.88 13.33 7.55 12.50 11.76 4.88 10.53 12.50 15.00 13.04 17.65 17.65 8.00 6.25 9.09 16.67 6.12 11.76 13.64 5.26 9.52 6.67 10.71 20.00 8.16 9.09 5.41 14.29 8.33 6.25 14.29 10.87 11.11 5.88 3.85 6.25 5.26 8.33 4.17 4.55 18.18 K alternative_first_exon CG17574 chr2R - chr2R_8737734_8738279,chr2R_8737734_8738952,chr2R_8737734_8742587;chr2R_8737734_8756447 chr2R_8737734_8744159 chr2R_8756448_8756588 chr2R_8744160_8744253 chr2R_8737604_8737733 0.61 1.02 0.00 0.00 0.00 1.72 0.00 0.00 0.61 2.04 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.64 0.00 1.02 2.40 1.31 1.06 0.00 1.94 0.00 2.17 0.00 0.00 2.90 0.00 0.00 2.56 3.49 2.10 0.92 0.00 0.72 1.32 0.00 0.00 3.16 2.06 0.81 1.04 0.00 0.00 2.38 0.89 1.39 0.00 0.99 0.00 0.96 0.62 0.00 K alternative_first_exon Ca-P60A chr2R - chr2R_19820338_19820541,chr2R_19820338_19820765,chr2R_19820338_19820817,chr2R_19820338_19820955;chr2R_19820338_19823102;chr2R_19820338_19820781 chr2R_19820338_19821213 chr2R_19823103_19823219;chr2R_19820782_19821070 chr2R_19821214_19821281 chr2R_19820190_19820337 11.91 17.82 20.30 14.91 20.36 18.28 12.67 17.92 19.17 8.92 18.13 19.76 19.57 17.81 18.28 14.58 19.58 19.23 18.59 19.25 18.72 2.99 11.91 8.70 14.18 18.65 8.15 4.13 8.33 7.61 13.71 10.68 6.06 16.75 10.00 8.33 11.68 9.82 10.34 9.12 7.44 19.49 17.71 5.88 14.41 7.78 9.70 6.36 19.91 10.00 11.79 8.13 9.92 8.20 16.78 5.61 11.29 8.29 K alternative_first_exon Eip74EF chr3L - chr3L_17558826_17590559 chr3L_17558826_17567892 chr3L_17590560_17591067 chr3L_17567893_17569726 chr3L_17558457_17558825 96.15 100.00 100.00 95.24 100.00 100.00 100.00 100.00 96.77 90.00 92.31 95.24 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.15 90.91 76.92 89.29 90.91 91.67 100.00 93.75 82.35 100.00 89.29 100.00 100.00 91.43 94.74 94.12 93.33 93.55 94.12 95.65 96.15 81.82 92.31 100.00 100.00 92.31 100.00 85.71 96.43 95.65 88.24 95.24 100.00 100.00 100.00 100.00 92.31 100.00 96.43 K alternative_first_exon lolal chr2R - chr2R_14043671_14043736,chr2R_14043671_14043740,chr2R_14043671_14043901,chr2R_14043671_14044074,chr2R_14043671_14044191,chr2R_14043671_14044461,chr2R_14043671_14045189,chr2R_14043671_14045264,chr2R_14043671_14045285;chr2R_14043671_14043772;chr2R_14043671_14044260,chr2R_14043671_14044251;chr2R_14043671_14045477,chr2R_14043671_14045446 chr2R_14043671_14045350 chr2R_14043773_14043823;chr2R_14044261_14044395;chr2R_14045478_14045487 chr2R_14045351_14045444 chr2R_14043397_14043670 3.51 10.00 0.00 1.75 0.00 0.00 8.11 1.59 1.52 9.52 0.00 3.64 0.00 0.00 0.00 1.69 0.00 3.45 0.00 1.39 3.57 2.50 17.65 5.56 NA 2.63 28.57 5.26 8.89 2.94 0.00 2.63 3.95 1.56 10.00 9.52 NA NA 14.29 3.51 2.86 2.56 0.00 9.52 6.52 4.17 5.56 3.95 3.53 9.09 11.11 NA 14.29 16.67 0.00 14.29 17.86 2.65 K alternative_first_exon CG11055 chr2R + chr2R_16145258_16145691 chr2R_16145461_16145691 chr2R_16145157_16145257 chr2R_16145326_16145460 chr2R_16145692_16148064 0.00 NA 0.00 0.00 0.00 0.00 10.00 11.76 0.00 0.00 NA 7.69 NA NA NA NA NA NA 11.11 0.00 0.00 0.00 0.00 9.09 NA NA NA 0.00 9.09 0.00 NA NA 0.00 6.67 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 8.33 NA NA NA 0.00 NA NA 0.00 K alternative_first_exon gro chr3R + chr3R_21868657_21868716,chr3R_21868266_21868716,chr3R_21868622_21868716;chr3R_21867624_21868716;chr3R_21868626_21868716;chr3R_21868535_21868716 chr3R_21867907_21868716,chr3R_21867987_21868716 chr3R_21867432_21867623;chr3R_21868542_21868625;chr3R_21868363_21868534 chr3R_21867852_21867906 chr3R_21868717_21869101 4.17 7.35 4.48 5.26 5.56 3.70 5.06 6.98 4.32 0.00 7.14 3.36 7.55 8.96 6.76 5.83 7.55 3.70 5.80 2.07 5.66 5.17 0.81 2.35 4.17 8.62 5.00 2.50 5.36 2.90 6.94 3.70 3.57 6.36 3.39 2.74 1.33 3.28 1.47 1.42 2.50 5.26 8.00 2.99 0.00 7.14 2.99 4.85 5.00 1.52 1.98 1.56 2.00 5.88 6.25 3.85 3.64 2.27 K alternative_first_exon Rox8 chr3R - chr3R_19872214_19872659,chr3R_19872214_19872663,chr3R_19872214_19872909,chr3R_19872214_19873136,chr3R_19872214_19873214,chr3R_19872214_19873220,chr3R_19872214_19873550;chr3R_19872214_19873540;chr3R_19872214_19873682 chr3R_19872214_19873834 chr3R_19873541_19873678;chr3R_19873683_19873748 chr3R_19873835_19873987 chr3R_19871160_19872213 4.55 4.76 2.86 2.22 5.56 4.35 3.33 7.50 1.75 12.50 3.85 8.33 0.00 3.85 2.86 2.63 3.57 0.00 2.70 8.16 3.85 0.00 8.11 5.00 3.85 3.70 0.00 7.69 0.00 0.00 6.25 7.14 8.33 3.70 8.70 3.23 5.88 0.00 0.00 NA 6.25 1.67 4.17 0.00 8.33 18.18 8.00 6.45 6.25 10.53 7.14 0.00 5.88 6.67 5.56 8.33 5.00 13.33 K alternative_first_exon Smg5 chr2L - chr2L_13903932_13904025,chr2L_13903932_13904104,chr2L_13903932_13904379;chr2L_13903932_13904397 chr2L_13903932_13904206 chr2L_13904398_13904659 chr2L_13904207_13904359 chr2L_13903781_13903931 0.00 0.00 0.00 0.00 6.25 0.00 3.33 3.45 0.00 0.00 0.00 2.50 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 5.26 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 6.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 0.00 11.11 0.00 NA 0.00 0.00 0.00 4.00 K alternative_first_exon shi chrX + chrX_15786451_15786860;chrX_15786200_15786860 chrX_15786285_15786860,chrX_15786603_15786860,chrX_15786615_15786860,chrX_15786474_15786860,chrX_15786394_15786860 chrX_15786149_15786199 chrX_15786274_15786284 chrX_15786861_15787183 87.84 86.36 84.00 75.00 93.33 90.48 86.67 82.76 85.00 NA 88.00 87.80 84.62 87.88 82.14 81.82 94.12 84.62 81.63 90.20 88.89 NA 78.38 86.36 94.74 77.27 96.77 NA NA 93.10 84.21 NA 93.33 79.10 87.50 93.75 88.24 93.75 NA 93.48 89.47 80.77 82.14 89.66 NA 88.00 NA 89.19 84.62 NA 96.77 92.86 NA NA 80.00 NA NA 95.65 K alternative_first_exon CaMKI chr4 + chr4_466377_467256,chr4_466896_467256,chr4_466816_467256,chr4_466912_467256;chr4_466592_467256;chr4_467113_467256 chr4_466798_467256,chr4_466858_467256 chr4_466146_466591;chr4_466952_467112 chr4_466794_466797 chr4_467257_467272 40.40 NA NA 44.44 NA NA 36.36 44.44 23.08 NA NA 45.45 NA NA NA 30.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon Ubp64E chr3L + chr3L_5748726_5749304,chr3L_5749194_5749304;chr3L_5746335_5749304 chr3L_5747367_5749304 chr3L_5746086_5746334 chr3L_5747281_5747366 chr3L_5749305_5749533 0.71 0.95 0.00 0.00 0.00 1.04 0.77 0.65 0.00 1.52 0.00 0.55 1.09 1.08 0.00 0.00 0.00 0.00 0.90 0.42 1.19 1.94 0.78 0.83 1.25 0.84 0.88 1.96 0.00 0.94 0.00 0.74 0.00 0.71 1.06 0.00 1.75 0.00 0.00 0.47 0.00 0.51 0.00 0.00 0.48 0.83 0.89 0.86 0.60 0.89 1.61 1.16 1.05 0.00 0.00 1.48 1.56 0.43 K alternative_first_exon Hrb27C chr2L + chr2L_6921441_6922734;chr2L_6920862_6922734 chr2L_6921799_6922734 chr2L_6921286_6921440;chr2L_6920693_6920861 chr2L_6921666_6921798 chr2L_6922735_6922826 0.00 NA NA 0.00 NA NA NA 0.00 7.69 NA NA 0.00 NA 12.50 NA 10.00 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA 8.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA 14.29 NA NA NA K alternative_first_exon Pfrx chrX + chrX_19400112_19400518;chrX_19392914_19400518;chrX_19398571_19400518;chrX_19390821_19400518;chrX_19400271_19400518 chrX_19389585_19400518 chrX_19392406_19392913;chrX_19398456_19398570;chrX_19390713_19390820;chrX_19399962_19400270 chrX_19389538_19389584 chrX_19400519_19402937 0.00 NA 12.50 0.00 NA NA 0.00 0.00 0.00 14.29 NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 11.11 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 14.29 0.00 0.00 0.00 NA 0.00 K alternative_first_exon Chi chr2R - chr2R_19921096_19921345 chr2R_19921096_19921201 chr2R_19921346_19921459 chr2R_19921202_19921291 chr2R_19919062_19921095 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.00 5.26 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 0.00 2.63 3.33 0.00 0.00 0.00 0.00 0.00 0.00 2.17 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 K alternative_first_exon Tfb1 chr2R + chr2R_10250584_10250749 chr2R_10250627_10250749 chr2R_10250556_10250583 chr2R_10250599_10250626 chr2R_10250750_10251018 20.00 NA NA 20.00 NA 26.67 NA 13.04 15.38 NA NA 23.53 NA NA 15.38 NA NA NA NA 11.11 16.67 NA NA NA NA NA NA NA NA NA NA NA 73.33 12.50 NA NA NA NA NA 52.38 NA 20.00 NA NA 28.57 NA NA 71.43 10.00 NA NA NA NA NA NA NA NA 53.33 K alternative_first_exon Argk chr3L - chr3L_9043460_9050642;chr3L_9043460_9055006 chr3L_9043460_9044229 chr3L_9050643_9050679;chr3L_9055007_9055567 chr3L_9044230_9044848 chr3L_9041962_9043459 0.00 NA 0.00 0.00 NA NA 0.00 0.00 2.94 NA NA 0.00 NA NA 0.00 5.00 0.00 0.00 0.00 0.00 0.00 3.23 NA NA NA NA NA 8.33 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA 0.00 NA K alternative_first_exon tacc chr3R - chr3R_570388_574512 chr3R_570388_571563,chr3R_570388_571518 chr3R_574513_574777 chr3R_571564_572136 chr3R_570186_570387 7.07 4.35 9.43 7.41 5.71 6.82 12.50 8.33 9.18 2.94 8.11 6.17 8.57 9.52 5.56 7.58 9.09 4.35 11.36 7.69 6.82 21.05 6.58 7.14 5.56 7.69 6.00 7.69 5.36 3.51 9.09 3.70 5.68 11.11 6.82 8.51 6.35 4.17 4.00 3.96 7.14 6.38 6.82 12.00 10.34 8.11 6.25 3.96 7.07 8.70 5.63 5.56 16.00 5.00 10.64 3.85 15.79 11.76 K alternative_first_exon CG42238 chr2L - chr2L_20967747_20968017,chr2L_20967747_20968635,chr2L_20967747_20968810,chr2L_20967747_20968842,chr2L_20967747_20969164;chr2L_20967747_21051773 chr2L_20967747_20968786 chr2L_21051774_21051954 chr2L_20968787_20968943 chr2L_20965520_20967746 5.45 5.00 6.82 5.63 3.03 6.25 3.28 4.94 4.21 5.77 0.00 7.95 5.00 7.69 1.85 4.41 2.56 4.76 1.75 7.45 3.33 10.39 7.46 6.25 4.26 2.33 4.92 5.26 12.50 6.06 5.88 9.68 14.63 6.25 6.38 5.48 7.27 7.14 7.55 5.61 5.45 7.69 0.00 3.77 1.89 5.00 4.65 4.46 8.42 7.55 7.81 5.88 2.78 3.23 3.64 1.85 5.56 4.44 K alternative_first_exon CG18135 chr3L - chr3L_18985826_18986825;chr3L_18985826_18991100 chr3L_18985826_18988530 chr3L_18986826_18987093;chr3L_18991101_18991383 chr3L_18988531_18988907 chr3L_18983122_18985825 28.21 21.43 28.57 18.75 33.33 36.36 50.00 21.43 36.36 33.33 22.22 37.50 46.15 45.45 30.00 40.00 30.00 25.00 30.00 19.23 25.00 38.89 27.59 19.05 41.67 27.27 36.84 20.00 23.81 37.50 26.67 25.00 27.27 42.86 27.27 34.29 31.82 31.25 21.43 28.21 17.65 33.33 30.00 30.00 7.69 15.79 22.22 20.00 34.29 26.32 31.03 28.57 16.67 20.00 41.67 18.18 11.11 17.14 K alternative_first_exon CG17490 chr2L + chr2L_22431120_22432684;chr2L_22431020_22432684 chr2L_22431088_22432684,chr2L_22431301_22432684 chr2L_22430964_22431019 chr2L_22431059_22431087 chr2L_22432685_22433056 73.62 NA NA NA NA NA NA 55.56 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 91.67 K alternative_first_exon NFAT chrX + chrX_13519623_13543409 chrX_13539838_13543409 chrX_13518790_13519622 chrX_13539217_13539837 chrX_13543410_13543534 19.23 18.18 26.19 27.85 15.38 18.18 21.67 27.17 26.73 23.08 18.18 25.97 26.53 28.57 17.78 32.50 21.62 21.62 25.00 19.42 14.29 14.71 24.49 16.67 11.11 15.38 11.76 11.76 13.16 16.67 22.92 14.29 11.25 24.71 26.92 13.16 18.60 16.00 18.18 21.21 13.04 21.18 21.95 36.00 14.29 15.62 20.00 18.89 28.92 22.22 26.32 20.69 15.79 18.18 19.23 15.79 21.43 17.78 K alternative_first_exon G-oalpha47A chr2R + chr2R_6325600_6326879,chr2R_6326243_6326879;chr2R_6325857_6326879;chr2R_6325802_6326879 chr2R_6325612_6326879 chr2R_6325808_6325856;chr2R_6325766_6325801 chr2R_6325466_6325611 chr2R_6326880_6326950 85.71 NA 81.82 90.00 NA NA 81.25 84.21 81.82 NA NA 85.71 NA 77.78 87.50 80.00 86.67 NA 87.50 81.25 NA 90.00 85.71 NA NA NA NA NA NA 72.73 94.12 NA 100.00 89.47 NA NA NA NA NA 85.71 NA 83.33 NA 100.00 NA 80.00 NA 85.71 82.35 NA 77.78 NA NA NA 100.00 NA NA 76.92 K alternative_first_exon chic chr2L - chr2L_5979705_5979818,chr2L_5979705_5979951,chr2L_5979705_5979953,chr2L_5979705_5979959,chr2L_5979705_5980025,chr2L_5979705_5980558,chr2L_5979705_5980632,chr2L_5979705_5980639,chr2L_5979705_5980734,chr2L_5979705_5980846;chr2L_5979705_5980952,chr2L_5979705_5980950;chr2L_5979705_5979939 chr2L_5979705_5980208 chr2L_5980953_5981025;chr2L_5979940_5980098 chr2L_5980209_5980481 chr2L_5979412_5979704 0.96 1.27 0.41 0.48 0.78 0.56 0.67 0.46 0.68 2.62 0.64 0.95 0.71 0.60 0.49 0.43 0.24 0.92 0.41 0.88 0.58 1.79 1.30 1.72 1.83 0.68 2.03 3.67 2.70 1.53 0.52 0.69 0.96 0.70 0.94 3.13 3.22 2.04 2.30 1.07 1.39 0.63 0.55 1.31 1.83 1.08 1.46 1.15 0.55 1.17 1.42 0.99 1.07 1.66 0.35 1.57 1.08 0.51 K alternative_first_exon CG6950 chr3R - chr3R_7647542_7647697;chr3R_7647542_7648144;chr3R_7647542_7647628 chr3R_7647542_7647913 chr3R_7648145_7648210;chr3R_7647629_7647839 chr3R_7647914_7647955 chr3R_7647002_7647541 4.55 0.00 6.25 6.25 0.00 0.00 6.67 5.26 0.00 NA 0.00 4.76 0.00 0.00 8.33 0.00 NA 8.33 0.00 0.00 9.09 NA 12.50 NA NA NA NA NA NA NA 7.69 NA 0.00 5.56 NA NA 0.00 NA NA 0.00 NA 4.35 NA 0.00 NA 0.00 NA 11.11 5.00 NA NA NA NA NA 13.33 NA 7.14 10.00 K alternative_first_exon CG13624 chr3R - chr3R_20402241_20408434 chr3R_20402241_20402898 chr3R_20408435_20408577 chr3R_20402899_20403171 chr3R_20402186_20402240 0.00 NA NA NA NA NA NA 0.00 10.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_first_exon CG32767 chrX - chrX_4976273_4976923;chrX_4976273_4976914;chrX_4976273_4976554 chrX_4976273_4978605 chrX_4976915_4976973;chrX_4976555_4976797 chrX_4978606_4978760 chrX_4975519_4976272 60.00 NA NA 53.33 NA NA 52.63 68.75 52.38 NA NA 66.67 75.00 62.50 NA 70.59 NA NA 55.56 60.00 NA 57.14 70.00 NA NA NA NA NA NA NA NA NA NA 56.25 66.67 50.00 NA NA NA 71.43 NA 60.00 60.00 NA NA NA NA 37.50 63.64 NA NA NA NA NA NA NA NA NA K alternative_first_exon CG8026 chr2R - chr2R_5076726_5078780 chr2R_5076726_5077774 chr2R_5078781_5079600 chr2R_5077775_5077851 chr2R_5076572_5076725 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 0.83 0.48 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 K alternative_first_exon CG1882 chr2R + chr2R_3700197_3700785,chr2R_3700238_3700785,chr2R_3700498_3700785 chr2R_3700703_3700785 chr2R_3700011_3700196 chr2R_3700582_3700702 chr2R_3700786_3702250 0.00 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 2.44 0.00 4.96 3.23 0.00 0.00 0.00 4.23 2.60 2.56 1.89 0.00 0.00 1.05 1.89 0.00 3.85 0.00 0.00 1.67 2.33 3.33 1.52 0.00 1.59 0.00 1.64 1.89 6.00 0.00 2.22 3.70 0.00 0.00 0.00 4.55 0.00 0.00 0.00 K alternative_first_exon CG7082 chr2L + chr2L_2222443_2223242;chr2L_2220952_2223242;chr2L_2222771_2223242 chr2L_2222299_2223242 chr2L_2220767_2220951;chr2L_2222657_2222770 chr2L_2222106_2222298 chr2L_2223243_2223633 9.09 11.76 6.25 8.82 8.33 29.41 13.79 14.63 10.64 8.33 15.38 5.13 9.09 10.71 5.00 9.52 16.67 10.00 14.81 10.81 0.00 5.88 4.76 7.69 0.00 14.29 0.00 10.00 22.22 5.26 17.39 9.09 5.88 10.81 6.67 6.67 0.00 11.11 14.29 4.55 20.00 9.38 13.64 5.88 8.33 17.39 5.26 14.29 8.16 0.00 5.26 7.14 0.00 8.33 15.38 10.53 0.00 16.13 K alternative_first_exon Droj2 chr3R + chr3R_9208529_9209185,chr3R_9208264_9209185,chr3R_9208835_9209185;chr3R_9208857_9209185;chr3R_9207981_9209185 chr3R_9209067_9209185 chr3R_9208544_9208856;chr3R_9207799_9207980 chr3R_9208987_9209066 chr3R_9209186_9210301 0.00 0.00 0.00 0.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.31 0.00 0.00 0.00 0.83 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon Cka chr2L + chr2L_8031338_8032059,chr2L_8031163_8032059,chr2L_8031531_8032059;chr2L_8030840_8032059,chr2L_8031309_8032059,chr2L_8031036_8032059 chr2L_8031576_8032059 chr2L_8031357_8031575 chr2L_8032060_8032641 1.52 0.00 1.19 0.79 2.56 1.75 3.23 2.27 1.32 1.14 1.89 1.37 2.13 1.39 1.25 3.65 2.53 1.45 2.41 1.27 1.04 0.94 0.49 0.87 1.32 3.80 3.70 1.15 1.32 0.88 1.22 3.57 3.08 2.80 3.03 1.12 1.03 6.25 1.75 2.08 5.56 2.24 1.67 0.96 0.00 1.59 0.00 2.63 2.59 1.30 2.36 1.52 0.00 0.00 1.94 2.13 1.15 2.44 K alternative_first_exon CG33156 chr2R - chr2R_9437422_9438177;chr2R_9437422_9437491 chr2R_9437422_9439612,chr2R_9437422_9439456 chr2R_9438178_9438952;chr2R_9437492_9437780 chr2R_9439613_9439911 chr2R_9437104_9437421 100.00 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 94.12 NA 100.00 100.00 100.00 100.00 88.89 100.00 100.00 100.00 96.30 100.00 100.00 100.00 100.00 100.00 100.00 93.33 88.89 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.77 100.00 100.00 100.00 100.00 100.00 100.00 92.31 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_first_exon CG14425,Sxl chrX - chrX_6991093_6992033 chrX_6991093_6991656 chrX_6992034_6992086 chrX_6991657_6991801 chrX_6991031_6991092 17.79 NA NA 12.50 NA NA NA 33.33 9.09 NA NA NA NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon Moe chrX - chrX_8770786_8774324 chrX_8770786_8772501 chrX_8774325_8774433 chrX_8772502_8772748 chrX_8770606_8770785 0.00 0.00 0.00 0.09 0.00 0.17 0.12 0.07 0.07 0.00 0.00 0.08 0.00 0.16 0.14 0.16 0.00 0.00 0.12 0.14 0.17 0.00 0.00 0.00 0.31 0.00 0.18 1.03 0.00 0.24 0.00 0.00 0.22 0.08 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.16 0.00 0.00 0.00 0.00 0.00 0.18 0.14 0.28 0.33 0.26 0.00 0.00 0.00 0.00 0.00 0.20 K alternative_first_exon CG32767 chrX - chrX_4976273_4976923;chrX_4976273_4978605;chrX_4976273_4976554 chrX_4976273_4976914 chrX_4978606_4978760;chrX_4976555_4976797 chrX_4976915_4976973 chrX_4975519_4976272 11.80 NA NA 13.33 NA NA 5.26 6.25 9.52 NA NA 16.67 12.50 12.50 NA 5.88 NA NA 0.00 13.33 NA 14.29 10.00 NA NA NA NA NA NA NA NA NA NA 12.50 11.11 12.50 NA NA NA 14.29 NA 10.00 0.00 NA NA NA NA 25.00 9.09 NA NA NA NA NA NA NA NA NA K alternative_first_exon CG33054,CG33056 chr3L - chr3L_21193615_21196177;chr3L_21193615_21195847 chr3L_21193615_21193724 chr3L_21195848_21195978 chr3L_21193725_21193767 chr3L_21193508_21193614 0.00 NA NA 0.00 NA NA NA 0.00 9.09 NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA 9.09 NA NA NA NA NA NA NA 0.00 NA 12.50 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA 0.00 K alternative_first_exon ps chr3R + chr3R_5245770_5257753;chr3R_5243723_5257753 chr3R_5254375_5257753 chr3R_5245317_5245769;chr3R_5243664_5243722 chr3R_5254284_5254374 chr3R_5257754_5258561 37.50 23.08 44.44 25.00 42.86 18.18 36.36 47.62 30.56 NA 40.00 40.74 45.45 35.00 41.18 33.33 46.67 31.25 30.00 29.79 44.44 26.67 26.09 40.00 36.36 41.18 37.50 42.86 25.00 46.67 42.86 NA 30.77 33.33 25.00 47.06 54.55 33.33 40.00 44.00 NA 48.48 26.67 38.10 NA 0.00 44.44 50.00 30.77 NA 31.58 27.27 42.86 NA 41.18 57.14 28.57 33.33 K alternative_first_exon CG3638 chrX - chrX_1128313_1128642,chrX_1128313_1129783;chrX_1128313_1130477 chrX_1128313_1128786 chrX_1130478_1130666 chrX_1128787_1129086 chrX_1127836_1128312 79.41 78.95 70.00 81.48 81.82 78.95 62.50 76.00 80.56 85.19 83.33 83.33 88.89 78.57 78.26 70.37 80.00 68.18 88.89 79.41 87.50 75.00 72.73 78.26 78.95 72.22 77.78 84.62 82.61 76.67 84.00 80.77 86.67 84.00 79.17 68.75 82.35 81.25 75.00 75.00 86.36 84.21 81.25 86.67 84.62 78.26 72.22 76.47 70.83 78.57 80.00 78.95 73.33 85.71 80.95 77.27 81.25 81.25 K alternative_first_exon CG7720 chr3R - chr3R_14617843_14620732 chr3R_14617843_14619179 chr3R_14620733_14620876 chr3R_14619180_14619555 chr3R_14617773_14617842 50.00 NA 50.00 NA NA NA 61.54 50.00 66.67 NA NA 42.86 NA 83.33 66.67 50.00 NA NA NA 47.06 NA NA 60.00 NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA 50.00 NA 75.00 NA NA NA NA 41.67 NA NA NA NA NA NA NA NA NA K alternative_first_exon CG33181 chrX + chrX_8384049_8403488 chrX_8396808_8403488 chrX_8383867_8384048 chrX_8396422_8396807 chrX_8403489_8403499 100.00 NA NA NA NA NA NA 100.00 100.00 NA NA NA 100.00 NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon CG8709,kermit chr2R - chr2R_4035901_4036531;chr2R_4035901_4036432;chr2R_4035901_4036812 chr2R_4035901_4043918,chr2R_4035901_4043559 chr2R_4036433_4036503;chr2R_4036813_4036924 chr2R_4043919_4044126 chr2R_4034423_4035900 100.00 100.00 100.00 94.87 100.00 96.97 96.00 98.15 98.61 100.00 100.00 98.41 100.00 100.00 100.00 98.21 100.00 100.00 100.00 96.88 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.37 100.00 98.15 100.00 100.00 100.00 97.73 100.00 100.00 100.00 97.06 100.00 100.00 100.00 97.56 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_first_exon Moe chrX - chrX_8774434_8774689,chrX_8774434_8775292,chrX_8774434_8775660,chrX_8774434_8775874;chrX_8774434_8788091;chrX_8774434_8785766,chrX_8774434_8785594;chrX_8774434_8791943,chrX_8774434_8791871 chrX_8774434_8792216 chrX_8788092_8788228;chrX_8785767_8785834;chrX_8791944_8792031 chrX_8792217_8792343 chrX_8774325_8774433 2.49 3.25 3.02 2.74 2.26 3.34 2.48 2.49 2.18 0.75 0.81 3.01 3.40 2.97 2.48 4.57 2.47 2.13 3.26 2.42 1.50 4.67 3.16 2.43 2.05 3.41 3.15 2.91 2.93 2.14 3.54 1.92 1.30 2.38 2.65 4.29 2.29 1.92 2.34 2.94 1.18 2.17 3.48 2.71 2.54 2.07 4.89 2.13 2.32 2.91 3.23 1.47 3.88 2.78 2.56 2.39 1.97 1.79 K alternative_first_exon lolal chr2R - chr2R_14043671_14043736,chr2R_14043671_14043740,chr2R_14043671_14043901,chr2R_14043671_14044074,chr2R_14043671_14044191,chr2R_14043671_14044461,chr2R_14043671_14045189,chr2R_14043671_14045264,chr2R_14043671_14045285;chr2R_14043671_14043772;chr2R_14043671_14044260,chr2R_14043671_14044251;chr2R_14043671_14045350 chr2R_14043671_14045477,chr2R_14043671_14045446 chr2R_14043773_14043823;chr2R_14044261_14044395;chr2R_14045351_14045444 chr2R_14045478_14045487 chr2R_14043397_14043670 60.87 55.00 78.00 71.93 54.55 68.97 51.35 71.43 54.55 42.86 64.29 58.18 72.73 55.00 63.64 62.71 72.73 68.97 66.67 61.11 53.57 55.00 23.53 16.67 NA 65.79 14.29 36.84 57.78 64.71 54.55 65.79 68.42 70.31 35.00 61.90 NA NA 14.29 52.63 68.57 64.10 63.16 47.62 60.87 62.50 38.89 67.11 68.24 31.82 33.33 NA 33.33 41.67 69.09 28.57 28.57 76.99 K alternative_first_exon UGP chr3L - chr3L_9347175_9351714 chr3L_9347175_9350682 chr3L_9351715_9352031 chr3L_9350683_9350991 chr3L_9347133_9347174 39.02 46.43 36.84 38.33 50.00 33.33 39.66 32.79 36.51 54.55 45.83 46.77 23.08 30.30 39.53 30.77 38.10 35.71 35.14 45.61 50.00 33.33 52.17 53.85 56.52 37.93 51.28 61.70 58.62 34.38 39.47 20.00 20.00 31.58 40.00 44.00 54.55 50.00 52.94 31.25 17.39 39.68 26.67 53.49 40.91 30.30 33.33 18.75 31.15 51.52 39.02 34.62 38.89 47.83 32.50 45.83 42.11 15.62 K alternative_first_exon dpp chr2L + chr2L_2433918_2455056;chr2L_2454909_2455056;chr2L_2450326_2455056;chr2L_2452415_2455056 chr2L_2429051_2455056 chr2L_2454739_2454908;chr2L_2449061_2450325;chr2L_2451007_2452414 chr2L_2428454_2429050 chr2L_2455057_2455938 50.00 40.00 66.67 60.00 33.33 60.00 44.44 71.43 50.00 50.00 50.00 50.00 62.50 50.00 60.00 55.56 50.00 66.67 60.00 63.64 50.00 22.22 37.50 75.00 25.00 60.00 44.44 18.18 30.00 28.57 60.00 50.00 37.50 62.50 50.00 42.86 50.00 75.00 50.00 50.00 33.33 55.56 50.00 40.00 66.67 60.00 66.67 50.00 66.67 57.14 40.00 50.00 66.67 NA 60.00 100.00 77.78 80.00 K alternative_first_exon CG1674 chr4 + chr4_251522_252560 chr4_252227_252560,chr4_252254_252560 chr4_251356_251521 chr4_252056_252226 chr4_252561_252603 91.67 87.50 87.50 100.00 NA NA 89.47 100.00 92.31 NA NA 92.86 92.86 100.00 NA 90.48 100.00 NA 100.00 91.67 NA NA NA NA NA NA NA NA NA NA NA NA NA 86.67 NA NA NA NA NA 87.50 NA 92.86 NA NA NA NA NA NA 90.48 NA 85.71 NA NA NA 85.71 NA NA NA K alternative_first_exon Pif1A,Pif1B chr3R - chr3R_4603664_4608007 chr3R_4603664_4604972 chr3R_4608008_4608106 chr3R_4604973_4605653 chr3R_4601040_4603663 3.08 0.00 6.67 5.56 11.11 8.33 7.69 6.67 6.45 NA 11.11 4.55 0.00 0.00 0.00 0.00 8.33 7.14 0.00 4.76 10.00 2.78 3.23 0.00 0.00 5.88 5.88 5.26 4.35 0.00 4.76 11.11 0.00 4.00 0.00 4.35 4.76 6.67 0.00 2.33 0.00 3.85 8.33 5.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 K alternative_first_exon kdn chrX + chrX_6244988_6252934 chrX_6246515_6252934 chrX_6244662_6244987 chrX_6246314_6246514 chrX_6252935_6253912 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.53 100.00 99.03 100.00 100.00 100.00 100.00 100.00 99.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.31 100.00 100.00 99.25 100.00 100.00 99.45 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.00 100.00 100.00 K alternative_first_exon CG42542 chr3R + chr3R_11023231_11024586,chr3R_11024452_11024586;chr3R_11022360_11024586 chr3R_11022729_11024586,chr3R_11023020_11024586 chr3R_11022332_11022359 chr3R_11022716_11022728 chr3R_11024587_11024872 13.38 NA NA 6.25 NA NA NA 5.88 15.38 NA NA 21.43 NA 21.43 NA NA NA NA 25.00 10.26 NA NA NA NA NA 18.75 NA NA NA NA NA NA NA 10.53 NA NA NA NA NA NA NA 11.76 NA NA NA NA NA NA 15.00 NA NA NA NA NA 8.33 NA NA NA K alternative_first_exon MED6 chr3R - chr3R_5593601_5593698;chr3R_5593601_5594085 chr3R_5593601_5593886 chr3R_5593699_5593832;chr3R_5594086_5594211 chr3R_5593887_5593976 chr3R_5593573_5593600 1.28 0.00 4.76 4.00 5.56 10.53 0.00 7.69 2.56 NA 6.25 6.25 0.00 0.00 7.69 4.55 0.00 4.55 7.69 0.00 8.33 15.15 4.00 0.00 5.56 0.00 0.00 4.17 6.25 0.00 0.00 11.76 13.04 0.00 0.00 0.00 0.00 5.56 0.00 5.88 0.00 0.00 0.00 16.67 7.14 0.00 0.00 0.00 9.38 0.00 0.00 0.00 0.00 0.00 4.76 0.00 4.55 7.14 K alternative_first_exon CG33936,CG33937 chr3R + chr3R_5181426_5182145 chr3R_5182048_5182145 chr3R_5181217_5181425 chr3R_5181678_5182047 chr3R_5182146_5182392 60.00 NA 50.00 50.00 NA NA 63.64 50.00 70.00 60.00 40.00 45.45 50.00 NA 50.00 66.67 50.00 60.00 60.00 70.00 NA 83.33 57.14 55.56 NA NA 75.00 60.00 60.00 NA 50.00 NA 33.33 41.67 NA 62.50 66.67 75.00 66.67 50.00 NA 66.67 71.43 50.00 NA NA NA NA 38.46 NA 85.71 NA NA NA 75.00 NA NA NA K alternative_first_exon Amun chrX - chrX_11607839_11608272;chrX_11607839_11608590,chrX_11607839_11608507 chrX_11607839_11608054 chrX_11608591_11608934 chrX_11608055_11608246 chrX_11607788_11607838 12.50 NA 0.00 15.38 0.00 22.22 0.00 14.29 6.90 16.67 9.09 6.67 28.57 11.11 13.33 20.00 10.00 13.33 0.00 10.00 22.22 18.18 11.11 25.00 0.00 13.33 14.29 11.11 20.00 12.50 18.18 20.00 8.70 0.00 0.00 15.38 6.25 25.00 15.38 0.00 16.67 5.26 14.29 10.00 20.00 13.33 22.22 10.53 13.64 11.11 30.00 0.00 14.29 11.11 0.00 0.00 12.50 12.50 K alternative_first_exon Tao-1 chrX - chrX_19467498_19469390 chrX_19467498_19467636 chrX_19469391_19470002 chrX_19467637_19467876 chrX_19467324_19467497 3.90 3.86 4.48 10.00 3.31 2.80 12.90 4.86 4.06 3.39 3.51 7.46 5.00 4.60 5.04 5.26 3.03 5.08 4.17 3.41 4.55 9.69 2.86 2.82 4.48 7.62 7.41 9.91 5.26 2.77 4.92 4.31 2.65 5.67 2.73 3.21 1.54 3.53 2.19 3.74 2.38 3.30 9.18 3.90 0.40 3.08 1.90 2.59 4.55 4.32 4.82 5.30 2.44 2.86 5.56 2.00 1.76 1.45 K alternative_first_exon CAP chr2R + chr2R_6159586_6179999 chr2R_6172307_6179999 chr2R_6159407_6159585 chr2R_6166251_6172306 chr2R_6180000_6180377 66.67 57.14 66.67 88.89 60.00 62.50 87.50 61.54 57.14 66.67 55.56 73.33 77.78 46.15 66.67 50.00 57.14 85.71 63.64 85.71 70.00 75.00 57.14 70.00 80.00 66.67 85.71 75.00 57.14 71.43 50.00 80.00 62.50 64.71 66.67 80.00 85.71 60.00 85.71 33.33 75.00 66.67 50.00 62.50 70.00 71.43 75.00 40.00 81.25 71.43 57.14 57.14 62.50 75.00 61.54 75.00 50.00 26.67 K alternative_first_exon slgA chrX + chrX_21245152_21247146,chrX_21245487_21247146;chrX_21245768_21247146,chrX_21245849_21247146 chrX_21246521_21247146 chrX_21245368_21245767 chrX_21246451_21246520 chrX_21247147_21247693 7.29 12.50 0.00 22.22 NA 11.11 22.22 5.26 5.88 NA NA 5.26 20.00 0.00 0.00 6.25 NA 11.11 8.33 16.67 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA 6.25 0.00 NA 12.50 NA NA 0.00 NA 12.50 NA 0.00 NA NA 0.00 NA 11.76 NA 12.50 NA NA NA 10.00 11.11 NA NA K alternative_first_exon CG17838 chr3R + chr3R_16598605_16617466;chr3R_16606550_16617466;chr3R_16616055_16617466 chr3R_16609303_16617466 chr3R_16598518_16598604;chr3R_16605654_16606549;chr3R_16615708_16616054 chr3R_16608705_16609302 chr3R_16617467_16617585 30.00 34.21 26.53 24.72 27.78 26.19 31.03 26.37 26.67 17.95 29.73 24.74 25.00 50.00 28.57 27.91 30.77 30.00 27.66 26.36 27.03 26.09 30.14 34.88 30.77 28.57 29.27 23.81 44.83 27.78 25.00 55.56 36.51 28.74 32.43 32.43 28.79 31.58 31.91 37.93 60.00 25.26 29.73 34.69 72.22 62.50 60.00 43.55 30.00 52.94 27.66 33.33 43.48 68.42 26.92 61.90 64.71 59.38 K alternative_first_exon Pfrx chrX + chrX_19400275_19400515,chrX_19400112_19400515;chrX_19392914_19400515;chrX_19398571_19400515;chrX_19390821_19400515 chrX_19400271_19400515 chrX_19392406_19392913;chrX_19398456_19398570;chrX_19390713_19390820 chrX_19399962_19400270 chrX_19400516_19402937 36.36 36.36 33.33 25.00 30.00 30.00 64.29 50.00 29.41 36.36 50.00 35.71 28.57 55.56 50.00 56.25 42.86 50.00 40.00 50.00 40.00 NA 42.86 18.18 50.00 50.00 33.33 44.44 14.29 50.00 36.36 33.33 37.50 46.67 33.33 33.33 35.71 16.67 33.33 26.67 20.00 52.94 40.00 40.00 40.00 41.67 33.33 20.00 50.00 46.15 36.36 25.00 33.33 NA 33.33 12.50 37.50 40.00 K alternative_first_exon CG6231 chr3R - chr3R_15445103_15453165;chr3R_15445103_15458055 chr3R_15445103_15446336 chr3R_15453166_15453476;chr3R_15458056_15458440 chr3R_15446337_15446860 chr3R_15444807_15445102 100.00 100.00 83.33 100.00 75.00 100.00 100.00 100.00 92.31 NA NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 91.67 NA 66.67 87.50 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 75.00 100.00 100.00 100.00 100.00 NA 100.00 80.00 100.00 NA 100.00 100.00 85.71 NA 100.00 100.00 100.00 93.33 NA 100.00 100.00 100.00 NA 83.33 75.00 100.00 100.00 K alternative_first_exon Cp1 chr2R + chr2R_9848382_9849724 chr2R_9848771_9849724 chr2R_9848164_9848381 chr2R_9848686_9848770 chr2R_9849725_9849841 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon CG31523 chr3R - chr3R_294322_296218;chr3R_294322_304674,chr3R_294322_304354 chr3R_294322_296835 chr3R_304675_304729 chr3R_296836_297321 chr3R_294186_294321 80.95 83.58 80.45 83.53 83.61 90.58 81.94 84.90 80.47 69.32 74.11 77.78 77.78 83.69 81.29 83.96 76.42 76.19 83.33 74.25 85.61 78.29 86.47 83.64 82.18 81.73 85.71 77.55 76.24 77.53 82.49 71.00 62.50 81.82 78.99 76.64 86.74 80.69 81.92 76.07 71.58 82.74 85.00 85.71 72.48 80.95 79.38 71.01 82.43 89.29 85.55 85.84 75.00 80.52 84.50 80.36 71.60 61.03 K alternative_first_exon Pkn chr2R - chr2R_5159680_5171332 chr2R_5159680_5159804 chr2R_5171333_5171634 chr2R_5159805_5160177 chr2R_5159490_5159679 40.00 NA NA NA NA NA NA NA 40.00 NA NA NA NA NA NA 50.00 NA NA NA NA NA 25.00 NA NA NA NA NA 44.44 NA NA NA NA 20.00 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon Treh chr2R + chr2R_16972204_16972702;chr2R_16964645_16972702 chr2R_16961618_16972702 chr2R_16971846_16972203;chr2R_16964100_16964644 chr2R_16961530_16961617 chr2R_16972703_16972892 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon psq chr2R + chr2R_6493563_6498054,chr2R_6493640_6498054;chr2R_6457648_6498054;chr2R_6449696_6498054 chr2R_6471629_6498054 chr2R_6457312_6457647;chr2R_6449531_6449695 chr2R_6471199_6471628 chr2R_6498055_6499020 3.12 3.12 2.94 3.77 4.17 6.06 7.32 4.76 4.40 0.00 3.57 3.23 2.63 5.26 6.25 5.77 3.45 3.57 6.06 6.78 3.45 3.45 2.70 0.00 0.00 3.85 3.33 6.25 0.00 0.00 2.63 0.00 4.00 5.80 4.17 4.17 0.00 0.00 0.00 2.33 0.00 4.05 3.45 0.00 0.00 0.00 0.00 0.00 4.05 0.00 2.70 3.70 0.00 0.00 2.94 0.00 0.00 0.00 K alternative_first_exon CG33523 chr3L + chr3L_5920177_5921323,chr3L_5919935_5921323;chr3L_5918725_5921323;chr3L_5920167_5921323 chr3L_5921008_5921323 chr3L_5918501_5918724;chr3L_5919971_5920166 chr3L_5920882_5921007 chr3L_5921324_5921396 16.18 11.32 15.25 14.58 18.60 19.57 14.44 11.63 11.73 16.67 17.14 11.93 16.33 9.68 9.43 12.62 8.33 18.37 13.75 18.18 15.91 48.00 16.18 13.11 19.05 19.61 17.86 32.14 56.25 27.91 14.41 23.33 47.73 11.57 18.75 21.62 14.04 10.20 22.06 20.83 37.04 12.84 14.81 12.50 36.11 17.39 14.52 35.29 11.68 22.58 10.14 18.52 18.18 15.38 12.16 9.26 12.68 37.70 K alternative_first_exon larp chr3R - chr3R_24151542_24156502;chr3R_24151542_24153880;chr3R_24151542_24159430 chr3R_24151542_24151775 chr3R_24153881_24154005;chr3R_24159431_24160429 chr3R_24151776_24151963 chr3R_24151211_24151541 3.68 3.68 2.84 6.44 5.60 4.44 9.09 10.24 4.84 1.82 4.35 4.19 11.11 10.00 5.06 11.41 7.38 3.88 10.34 3.70 3.15 2.20 2.51 3.28 4.02 7.56 4.13 2.24 3.41 1.65 29.57 2.02 1.95 7.32 3.43 1.92 2.40 3.32 2.29 3.18 2.21 5.01 7.44 4.07 1.03 2.79 2.63 1.28 6.38 3.45 4.44 5.76 1.20 2.31 6.25 2.80 2.65 0.74 K alternative_first_exon CG4068 chrX - chrX_4824099_4824170,chrX_4824099_4825090,chrX_4824099_4825618,chrX_4824099_4828814;chrX_4824099_4832007 chrX_4824099_4830045 chrX_4832008_4832077 chrX_4830046_4830183 chrX_4823407_4824098 6.67 5.88 8.00 19.23 7.14 5.56 10.71 9.09 13.04 NA 11.76 6.38 3.85 15.79 11.76 9.52 5.56 4.76 4.55 7.04 4.76 22.22 0.00 NA NA 0.00 6.67 NA NA 7.69 5.26 NA 16.67 10.26 14.29 7.14 0.00 0.00 7.14 4.55 NA 8.57 6.67 6.25 NA 0.00 NA 4.35 4.44 NA 6.25 NA NA NA 3.70 NA NA 15.38 K alternative_first_exon scny chr3L + chr3L_5764555_5764717,chr3L_5764245_5764717;chr3L_5763034_5764717 chr3L_5764472_5764717 chr3L_5762102_5763033 chr3L_5764320_5764471 chr3L_5764718_5765475 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.81 0.00 0.00 0.00 0.00 1.47 1.33 0.00 0.99 0.00 0.00 0.00 0.00 1.47 1.01 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.62 0.00 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 N alternative_first_exon crc chr2L + chr2L_21312213_21318126;chr2L_21315539_21318126;chr2L_21312044_21318126 chr2L_21312209_21318126 chr2L_21314366_21315538;chr2L_21311753_21312043 chr2L_21312098_21312208 chr2L_21318127_21318419 92.16 90.16 91.12 94.67 92.62 92.25 93.29 93.71 90.90 95.19 93.20 93.41 91.88 90.05 92.32 85.34 92.42 92.28 91.73 92.95 92.77 87.65 91.86 91.75 93.06 94.68 91.69 85.32 82.81 91.05 92.36 90.44 92.16 92.60 87.78 84.94 93.75 86.83 93.35 89.55 93.65 93.06 91.68 92.25 91.45 90.74 92.39 87.94 92.94 94.28 90.16 90.31 91.17 93.01 93.78 91.44 92.49 91.01 K alternative_first_exon CLIP-190 chr2L + chr2L_17385896_17394429;chr2L_17389531_17394429 chr2L_17386394_17394429 chr2L_17385561_17385895;chr2L_17389341_17389530 chr2L_17386146_17386393 chr2L_17394430_17394492 0.00 0.00 0.00 0.00 0.00 0.00 3.57 2.70 1.85 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon Hsc70-4 chr3R + chr3R_11069864_11070081,chr3R_11068693_11070081,chr3R_11068450_11070081,chr3R_11068736_11070081,chr3R_11069819_11070081;chr3R_11068522_11070081;chr3R_11070025_11070081;chr3R_11068903_11070081,chr3R_11068907_11070081 chr3R_11069017_11070081 chr3R_11068370_11068521;chr3R_11069941_11070024;chr3R_11068878_11068902 chr3R_11068920_11069016 chr3R_11070082_11072336 0.10 0.10 0.24 0.10 0.00 0.00 0.10 0.13 0.08 0.09 0.06 0.08 0.16 0.16 0.08 0.17 0.17 0.05 0.13 0.16 0.00 0.07 0.09 0.17 0.21 0.15 0.10 0.39 0.20 0.07 0.13 0.13 0.04 0.09 0.00 0.19 0.06 0.00 0.09 0.12 0.13 0.14 0.12 0.04 0.06 0.13 0.08 0.13 0.08 0.22 0.08 0.15 0.07 0.00 0.05 0.13 0.05 0.07 K alternative_first_exon eIF-4E chr3L - chr3L_9394468_9394631,chr3L_9394468_9394756,chr3L_9394468_9395016,chr3L_9394468_9395309,chr3L_9394468_9395446;chr3L_9394468_9395379 chr3L_9394468_9395270,chr3L_9394468_9395198,chr3L_9394468_9395020 chr3L_9395380_9395565 None chr3L_9394140_9394467 2.08 0.00 2.94 12.07 5.00 3.33 1.35 4.49 3.12 4.76 0.00 1.30 2.56 0.00 0.00 0.00 2.50 0.00 1.69 2.04 0.00 2.38 3.12 2.70 0.00 2.70 0.00 3.45 7.14 3.12 2.13 5.41 0.00 1.28 4.08 1.82 0.00 3.12 0.00 5.17 7.14 1.10 2.38 5.26 1.82 1.27 1.54 8.16 0.85 2.08 3.64 2.50 0.00 0.00 1.67 0.00 1.33 2.94 K alternative_first_exon regucalcin chrX + chrX_11906584_11910035,chrX_11909600_11910035;chrX_11906562_11910035 chrX_11908555_11910035 chrX_11906467_11906561 chrX_11908452_11908554 chrX_11910036_11910754 73.59 81.25 70.96 74.42 73.77 71.51 72.42 78.05 74.90 76.19 70.16 71.70 73.25 73.51 73.59 73.40 73.60 77.72 68.79 69.21 80.83 52.07 80.04 71.24 72.80 77.94 77.59 66.03 43.71 65.87 72.78 66.78 45.50 71.87 80.12 79.13 77.42 80.00 72.61 75.41 47.95 76.34 75.94 79.20 48.98 80.16 78.11 58.48 71.64 69.34 83.33 79.04 82.64 87.45 72.47 79.71 82.11 67.37 K alternative_first_exon shep chr3L - chr3L_5163541_5212049 chr3L_5163541_5177314 chr3L_5212050_5212385 chr3L_5177315_5177893 chr3L_5163287_5163540 87.93 87.37 94.57 94.29 89.02 94.49 96.73 96.71 92.97 71.62 93.13 92.21 97.71 95.80 94.81 97.59 93.91 95.33 96.24 94.10 95.45 63.33 80.00 74.26 79.22 95.20 84.95 87.93 83.50 85.58 95.00 85.42 84.33 94.94 87.37 81.37 63.24 72.29 68.54 88.51 90.62 90.95 95.97 83.54 78.33 86.25 81.48 93.33 93.39 83.87 84.78 83.56 69.33 82.00 94.67 85.48 75.00 87.06 K alternative_first_exon Cip4 chr3L - chr3L_4363128_4363987 chr3L_4363128_4363747 chr3L_4363988_4364120 chr3L_4363748_4363974 chr3L_4363027_4363127 4.23 3.61 7.23 4.10 4.44 5.00 9.35 4.86 4.10 2.99 2.82 3.40 10.00 4.35 7.79 3.38 1.96 2.90 2.50 1.99 3.23 4.48 5.37 7.78 4.84 7.14 12.16 2.50 8.70 3.00 4.76 9.09 4.30 3.39 4.23 2.08 3.74 2.63 5.95 3.85 5.13 4.38 4.00 3.70 3.08 4.46 4.12 5.33 3.90 4.23 8.49 4.82 3.03 3.28 4.60 4.17 5.95 6.14 K alternative_first_exon pnt chr3R - chr3R_19118404_19119566;chr3R_19118404_19137703 chr3R_19118404_19119572 chr3R_19137704_19137928 chr3R_19119573_19120960 chr3R_19117439_19118403 15.57 11.76 15.97 19.92 13.30 13.66 16.96 18.05 15.77 19.25 11.21 12.58 18.66 16.35 15.25 24.07 16.42 13.18 19.43 18.67 13.33 18.55 16.85 12.34 11.67 18.89 13.74 19.63 17.83 15.28 9.52 17.77 19.15 17.03 15.38 19.70 15.40 10.61 13.59 14.02 17.26 15.02 16.92 13.55 15.48 15.57 11.48 19.22 18.05 20.12 10.39 10.83 13.61 12.75 17.04 11.00 14.39 20.38 K alternative_first_exon Pak chr3R + chr3R_2180077_2180635,chr3R_2179262_2180635,chr3R_2180318_2180635,chr3R_2179971_2180635;chr3R_2176677_2180635,chr3R_2177074_2180635 chr3R_2179973_2180635 chr3R_2176628_2176676 chr3R_2179811_2179972 chr3R_2180636_2180902 16.28 25.81 14.71 17.95 13.79 8.57 11.11 10.42 16.00 16.22 7.89 18.87 15.15 24.00 14.29 22.73 13.79 15.91 17.86 18.75 13.79 38.64 15.38 29.79 13.79 8.57 22.86 29.73 24.44 21.62 13.33 17.39 20.34 14.75 29.73 14.29 16.67 16.28 20.00 15.19 16.67 14.94 11.11 25.58 13.16 15.38 29.63 14.29 15.38 10.00 27.45 21.21 40.00 22.73 20.00 16.13 23.53 24.56 K alternative_first_exon CG4165 chrX + chrX_5316449_5316612,chrX_5316536_5316612,chrX_5315965_5316612,chrX_5315734_5316612,chrX_5315730_5316612;chrX_5316160_5316612;chrX_5316300_5316612,chrX_5316313_5316612 chrX_5315701_5316612 chrX_5315939_5316159;chrX_5316237_5316299 chrX_5315563_5315700 chrX_5316613_5317050 9.09 7.14 12.50 11.11 0.00 18.18 6.67 4.35 20.00 0.00 16.67 9.38 10.00 12.50 6.67 15.79 6.67 18.75 6.25 18.92 23.08 4.76 5.00 5.88 9.09 7.69 0.00 13.33 10.00 5.56 17.65 NA 5.56 14.81 9.09 7.69 13.04 13.33 5.56 4.76 NA 10.00 15.38 10.00 NA 0.00 25.00 0.00 9.68 22.22 4.55 7.69 7.69 25.00 5.26 0.00 18.75 0.00 K alternative_first_exon ced-6 chr2R - chr2R_5325238_5329037,chr2R_5325238_5332177;chr2R_5325238_5329011,chr2R_5325238_5328696 chr2R_5325238_5328206 chr2R_5329012_5329065 chr2R_5328207_5328300 chr2R_5324925_5325237 78.40 78.40 74.90 70.94 67.68 76.19 65.16 64.76 66.59 82.76 64.67 74.86 76.62 74.03 69.28 75.00 63.13 72.73 71.72 81.63 68.97 78.23 83.50 78.49 83.70 74.64 78.93 79.72 86.35 81.29 69.00 83.89 83.39 69.39 83.57 86.77 74.54 79.39 81.59 89.46 81.22 77.01 70.68 89.90 90.00 87.23 87.30 91.95 73.40 75.98 80.49 78.11 89.02 85.54 72.22 83.07 79.70 86.55 N alternative_first_exon crc chr2L + chr2L_21312213_21318126;chr2L_21312209_21318126;chr2L_21315539_21318126 chr2L_21312044_21318126 chr2L_21312098_21312208;chr2L_21314366_21315538 chr2L_21311753_21312043 chr2L_21318127_21318419 0.18 0.20 0.14 0.06 0.21 0.18 0.07 0.06 0.07 0.25 0.18 0.07 0.14 0.16 0.27 0.12 0.30 0.18 0.23 0.07 0.17 0.20 0.11 0.15 0.20 0.25 0.13 0.20 7.99 0.22 0.10 0.37 0.19 0.07 0.25 0.30 0.19 0.31 0.18 0.15 0.23 0.07 0.18 0.13 0.33 0.17 0.22 0.47 0.07 0.18 0.16 0.22 0.35 0.26 0.10 0.23 0.17 0.23 K alternative_first_exon ClC-a chr3R - chr3R_7628414_7636085 chr3R_7628414_7631754 chr3R_7636086_7636857 chr3R_7631755_7632283 chr3R_7628306_7628413 40.00 33.33 50.00 28.57 25.00 50.00 12.50 33.33 22.22 40.00 25.00 28.57 50.00 20.00 33.33 20.00 20.00 20.00 42.86 22.22 33.33 41.67 50.00 40.00 25.00 NA 33.33 42.86 60.00 40.00 42.86 66.67 50.00 40.00 42.86 60.00 44.44 60.00 42.86 62.50 66.67 33.33 25.00 40.00 NA 40.00 44.44 50.00 25.00 50.00 50.00 40.00 66.67 NA 25.00 50.00 50.00 80.00 K alternative_first_exon CkIalpha chrX + chrX_12548131_12549203,chrX_12547919_12549203,chrX_12548566_12549203;chrX_12548202_12549203 chrX_12548828_12549203,chrX_12549003_12549203 chrX_12547816_12548201 chrX_12548789_12548827 chrX_12549204_12549349 3.79 3.51 3.33 4.27 4.76 2.22 3.79 3.20 1.36 4.17 2.22 4.39 3.61 2.63 3.08 1.47 7.02 6.52 5.95 5.38 4.44 17.39 5.00 3.57 2.86 2.63 3.77 5.71 3.70 8.82 1.37 10.00 12.77 3.79 2.33 2.56 7.14 6.25 3.70 1.61 6.06 5.17 3.03 4.55 4.00 7.32 7.14 2.63 6.15 6.06 1.72 2.27 4.76 11.11 5.13 3.45 3.33 2.78 K alternative_first_exon Nc73EF chr3L + chr3L_16952138_16952198,chr3L_16950952_16952198,chr3L_16950606_16952198;chr3L_16948914_16952198;chr3L_16948643_16952198,chr3L_16948692_16952198 chr3L_16950615_16952198,chr3L_16950628_16952198 chr3L_16948864_16948913;chr3L_16948605_16948642 chr3L_16950542_16950614 chr3L_16952199_16952316 47.83 38.46 39.13 30.77 47.83 39.29 33.33 39.29 53.57 38.10 29.41 35.80 38.24 44.44 40.91 41.86 44.00 42.11 48.65 44.71 48.39 57.69 64.29 71.05 50.00 46.67 55.56 73.68 61.54 53.33 25.71 NA 33.33 33.82 75.00 75.00 67.35 61.76 71.43 55.88 NA 36.49 38.46 59.09 45.45 60.00 63.16 30.77 37.97 67.65 80.49 48.00 52.94 81.82 42.42 72.00 60.00 13.33 K alternative_first_exon p120ctn chr2R + chr2R_482968_494268 chr2R_487593_494268 chr2R_482798_482967 chr2R_486774_487592 chr2R_494269_494825 100.00 100.00 100.00 100.00 100.00 100.00 99.47 100.00 99.54 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.92 100.00 100.00 100.00 100.00 100.00 100.00 98.72 98.11 98.65 97.96 98.51 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.11 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.52 94.83 100.00 100.00 100.00 100.00 100.00 100.00 98.61 98.95 K alternative_first_exon pan chr4 + chr4_107793_115048 chr4_113900_115048 chr4_107643_107792 chr4_111840_113899 chr4_115049_115241 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 1.72 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 1.39 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_first_exon Pde8 chr2R + chr2R_19547435_19547916;chr2R_19546851_19547916,chr2R_19546876_19547916;chr2R_19547223_19547916 chr2R_19545152_19547916 chr2R_19546810_19546850;chr2R_19547053_19547222 chr2R_19545099_19545151 chr2R_19547917_19548056 2.74 13.33 0.00 5.36 5.56 6.25 0.00 6.90 2.22 5.88 6.67 2.78 0.00 4.55 0.00 4.76 5.56 0.00 12.50 2.63 0.00 0.00 0.00 5.88 6.25 6.67 0.00 0.00 5.00 0.00 9.09 0.00 3.70 0.00 12.50 0.00 3.85 0.00 0.00 5.41 0.00 6.82 0.00 0.00 0.00 6.25 0.00 4.00 6.25 NA 2.70 15.38 9.09 0.00 9.09 0.00 0.00 0.00 K alternative_first_exon ssh chr3R - chr3R_20769244_20770111;chr3R_20769244_20770139 chr3R_20769244_20769311 chr3R_20770140_20770678 chr3R_20769312_20769617 chr3R_20768998_20769243 1.59 0.00 2.38 3.57 0.00 0.00 2.33 5.88 1.22 0.00 3.23 2.67 3.12 2.94 4.00 2.44 3.57 3.12 3.12 3.37 0.00 7.00 1.32 1.56 2.56 2.50 3.28 0.00 0.00 1.41 2.63 0.00 0.88 1.72 0.00 0.00 2.02 1.75 1.32 1.01 0.00 1.16 5.71 3.57 1.59 1.49 0.00 0.93 1.32 2.50 1.56 2.56 0.00 3.23 2.33 0.00 0.00 0.00 K alternative_first_exon CG32425 chr3L + chr3L_20502617_20503129;chr3L_20490526_20503129,chr3L_20491565_20503129 chr3L_20503061_20503129 chr3L_20490505_20490525 chr3L_20502734_20503060 chr3L_20503130_20503879 19.23 12.50 27.27 55.56 NA 18.18 44.44 42.86 23.08 15.38 NA 25.00 NA 25.00 54.55 27.27 NA NA 37.50 20.83 NA NA 14.81 10.00 13.33 50.00 6.67 14.29 16.67 14.29 66.67 NA 25.00 25.00 18.18 7.14 7.41 9.52 3.33 12.50 NA 20.00 NA 25.00 22.22 18.75 9.09 15.00 19.23 20.00 8.33 18.18 12.50 9.09 55.56 30.00 20.00 44.44 K alternative_first_exon Sam-S chr2L + chr2L_107839_108587 chr2L_108102_108587,chr2L_108347_108587,chr2L_108227_108587 chr2L_107760_107838 chr2L_108089_108101 chr2L_108588_108809 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.62 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_first_exon Rab5 chr2L - chr2L_2361586_2361738,chr2L_2361586_2362590,chr2L_2361586_2362869,chr2L_2361586_2364302,chr2L_2361586_2364480,chr2L_2361586_2364594,chr2L_2361586_2364836;chr2L_2361586_2364640,chr2L_2361586_2364312;chr2L_2361586_2364889;chr2L_2361586_2365060;chr2L_2361586_2363404 chr2L_2361586_2362674 chr2L_2364641_2364697;chr2L_2364890_2364952;chr2L_2365061_2365362;chr2L_2363405_2363501 chr2L_2362675_2362761 chr2L_2361160_2361585 5.17 7.14 4.35 4.39 7.55 6.52 3.63 5.43 6.02 3.64 2.94 7.80 5.13 4.42 4.38 7.28 5.17 4.55 8.39 4.13 3.54 3.10 9.73 10.31 3.66 2.63 8.97 6.67 2.30 5.61 6.11 1.09 1.84 6.48 9.76 2.35 7.69 7.69 4.24 5.19 3.12 6.94 4.26 3.70 1.69 2.41 5.50 0.76 6.11 6.74 8.42 5.62 6.45 7.25 4.38 7.07 3.82 2.67 K alternative_first_exon Aldh-III chr2R - chr2R_3361349_3362130,chr2R_3361349_3362076;chr2R_3361349_3361420 chr2R_3361349_3362846 chr2R_3362131_3362162;chr2R_3361421_3361592 chr2R_3362847_3362882 chr2R_3361227_3361348 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 11.11 0.00 0.00 0.00 NA 4.17 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 7.69 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon CG11597,CG5946 chr3L - chr3L_11815193_11815324 chr3L_11815193_11815260 chr3L_11815325_11815375 chr3L_11815261_11815287 chr3L_11814934_11815192 6.90 NA NA NA NA NA NA 7.14 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA 6.67 NA NA NA NA NA NA 0.00 NA NA NA NA NA 8.33 NA NA NA K alternative_first_exon Fur2 chrX + chrX_16267868_16268958,chrX_16268329_16268958,chrX_16267905_16268958;chrX_16267208_16268958,chrX_16267221_16268958 chrX_16267391_16268958,chrX_16267457_16268958 chrX_16267138_16267207 chrX_16267274_16267390 chrX_16268959_16269892 7.85 0.00 18.18 19.05 NA NA 12.90 11.54 12.77 0.00 16.67 14.29 20.00 11.11 8.33 14.29 9.52 NA 28.57 11.76 0.00 8.33 5.56 3.70 0.00 9.09 8.70 0.00 16.67 4.35 11.11 NA 4.35 14.71 11.11 8.00 3.57 5.56 6.25 8.82 0.00 10.71 NA 2.94 NA 4.55 0.00 0.00 7.69 6.67 3.57 0.00 0.00 NA 11.76 0.00 0.00 0.00 K alternative_first_exon Vha100-2 chr3R - chr3R_14219132_14222507;chr3R_14219132_14224713 chr3R_14219132_14222434 chr3R_14224714_14224876 chr3R_14222435_14222662 chr3R_14218994_14219131 10.16 7.50 7.75 21.98 13.79 8.87 21.95 12.38 10.57 4.88 13.33 12.62 16.67 10.16 11.94 11.06 15.05 11.40 10.13 9.92 10.31 22.37 11.93 10.23 10.53 11.90 10.75 24.14 21.05 9.86 9.74 6.78 11.46 9.66 11.27 14.67 6.25 7.02 5.21 7.69 10.00 10.16 9.62 13.89 3.08 7.59 6.15 7.63 11.31 14.04 6.36 8.70 10.00 7.41 9.52 6.35 10.11 7.26 K alternative_first_exon CG13085,CG16771 chr2L + chr2L_19426895_19427208,chr2L_19426780_19427208;chr2L_19426808_19427208;chr2L_19426699_19427208 chr2L_19427121_19427208 chr2L_19426758_19426807;chr2L_19426322_19426698 chr2L_19427087_19427120 chr2L_19427209_19429224 5.17 7.69 5.88 7.38 7.69 7.46 7.03 2.96 6.52 14.29 4.23 5.88 8.47 4.65 6.00 9.35 18.07 9.09 3.23 6.84 6.38 4.11 4.39 6.12 1.79 4.40 3.33 5.17 2.99 2.53 4.26 3.85 0.00 6.82 5.36 9.76 7.59 4.35 2.94 3.15 1.37 4.85 4.55 2.94 3.12 1.83 2.56 2.06 7.69 3.57 6.12 6.58 8.93 7.55 7.22 3.80 4.95 5.21 K alternative_first_exon Gpo-1 chr2R - chr2R_11748259_11750201;chr2R_11748259_11749386,chr2R_11748259_11749143;chr2R_11748259_11748565 chr2R_11748259_11750187 chr2R_11749387_11749454;chr2R_11748566_11748849 chr2R_11750188_11750251 chr2R_11748106_11748258 68.75 56.00 70.83 55.56 33.33 70.59 65.38 54.55 53.19 85.00 66.67 69.81 65.00 52.38 57.14 48.89 52.38 88.89 54.55 73.47 75.00 70.73 76.00 73.91 79.49 81.25 68.75 70.97 70.97 60.00 58.82 72.73 66.67 53.85 70.97 66.67 75.56 83.33 79.59 78.57 62.50 58.97 53.33 74.14 78.72 70.45 69.09 69.23 62.75 63.16 75.00 77.78 68.75 67.74 60.87 68.97 47.37 57.14 K alternative_first_exon Pfrx chrX + chrX_19400275_19400515,chrX_19400112_19400515;chrX_19398571_19400515;chrX_19390821_19400515;chrX_19400271_19400515 chrX_19392914_19400515 chrX_19398456_19398570;chrX_19390713_19390820;chrX_19399962_19400270 chrX_19392406_19392913 chrX_19400516_19402937 43.75 45.45 50.00 50.00 40.00 50.00 21.43 21.43 52.94 45.45 33.33 50.00 42.86 22.22 30.00 31.25 42.86 50.00 40.00 29.17 60.00 NA 42.86 63.64 37.50 33.33 66.67 33.33 42.86 37.50 36.36 50.00 43.75 26.67 33.33 50.00 50.00 83.33 50.00 46.67 80.00 41.18 60.00 53.33 60.00 41.67 33.33 50.00 33.33 30.77 54.55 62.50 44.44 NA 33.33 50.00 50.00 40.00 K alternative_first_exon rtGEF chr2L + chr2L_20355262_20355362,chr2L_20354239_20355362;chr2L_20350895_20355362 chr2L_20354068_20355362 chr2L_20350436_20350894 chr2L_20353970_20354067 chr2L_20355363_20355747 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 1.67 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 1.08 0.00 0.00 0.00 3.28 4.84 1.33 0.00 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.74 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.71 0.85 1.79 2.99 1.64 0.00 0.00 0.00 0.00 0.00 1.96 K alternative_first_exon PP2A-B' chr3R + chr3R_13994669_13995205;chr3R_13994844_13995205;chr3R_13993590_13995205 chr3R_13993929_13995205 chr3R_13994500_13994843;chr3R_13993451_13993589 chr3R_13993859_13993928 chr3R_13995206_13995820 0.00 8.33 0.00 0.00 0.00 0.00 2.94 0.00 2.38 NA 8.33 0.00 0.00 0.00 0.00 6.25 0.00 0.00 4.17 2.44 0.00 7.69 9.09 0.00 9.09 5.26 0.00 0.00 0.00 0.00 0.00 NA 7.69 3.03 0.00 0.00 NA 0.00 0.00 6.67 0.00 2.56 0.00 0.00 NA 0.00 0.00 7.14 0.00 12.50 0.00 9.09 0.00 NA 0.00 0.00 0.00 0.00 K alternative_first_exon capu chr2L - chr2L_3887557_3888648;chr2L_3887557_3893261 chr2L_3887557_3889430 chr2L_3888649_3888824;chr2L_3893262_3893604 chr2L_3889431_3890031 chr2L_3886984_3887556 4.26 3.51 7.84 1.54 2.63 4.65 8.33 5.71 3.91 6.45 2.33 6.45 4.44 6.67 3.70 7.02 4.55 3.45 6.00 4.59 2.13 3.57 3.96 3.49 6.25 7.69 3.75 8.11 3.75 3.85 7.14 2.27 4.30 5.26 8.77 9.84 2.00 1.92 2.04 2.99 7.14 5.77 6.06 2.82 4.44 4.23 2.04 4.39 5.71 1.64 4.26 5.00 1.92 0.00 5.97 2.08 2.13 3.85 K alternative_first_exon CG13204 chr2R + chr2R_7254607_7256052 chr2R_7255906_7256052 chr2R_7254216_7254606 chr2R_7255784_7255905 chr2R_7256053_7256203 10.55 0.00 NA 10.00 NA 20.00 16.67 14.29 11.11 0.00 NA 33.33 NA NA 0.00 16.67 NA 0.00 33.33 0.00 NA 10.00 0.00 20.00 0.00 20.00 11.11 NA 0.00 16.67 40.00 NA 10.00 14.29 0.00 25.00 0.00 16.67 0.00 0.00 0.00 14.29 NA 12.50 0.00 14.29 0.00 0.00 14.29 0.00 10.00 0.00 20.00 14.29 20.00 33.33 NA 0.00 K alternative_first_exon tacc chr3R - chr3R_563461_565232;chr3R_563461_565293 chr3R_563461_567573 chr3R_565233_565269;chr3R_565294_565365 chr3R_567574_569904 chr3R_563195_563460 81.82 76.19 77.78 82.35 66.67 76.67 72.46 88.68 67.16 71.43 80.65 86.27 78.57 85.71 83.33 77.42 83.33 76.19 68.75 77.19 77.27 72.22 86.11 72.00 82.35 66.67 82.61 83.33 72.22 78.57 60.00 84.62 96.67 81.63 93.75 88.89 86.21 77.78 79.41 90.91 92.31 75.00 88.00 95.65 90.00 72.73 81.82 89.47 83.33 81.25 91.43 81.25 82.35 85.71 84.21 91.67 68.00 84.62 K alternative_first_exon olf186-F chr2R + chr2R_13738966_13746762 chr2R_13745303_13746762 chr2R_13738384_13738965 chr2R_13743010_13745302 chr2R_13746763_13748075 95.74 95.83 82.35 91.38 92.86 90.32 92.31 95.00 95.40 90.62 95.35 95.77 81.25 91.67 94.74 91.67 92.59 93.94 91.18 97.22 94.74 98.41 95.89 98.11 96.88 90.32 95.83 96.55 97.62 93.18 93.75 96.30 96.15 93.75 94.29 96.30 98.57 97.78 96.49 96.67 96.88 97.22 92.86 98.04 97.78 95.65 97.56 92.98 97.18 97.73 96.43 93.75 95.24 97.30 92.50 97.56 97.37 95.74 K alternative_first_exon Eip63E chr3L + chr3L_3543708_3552786;chr3L_3546132_3552786 chr3L_3516829_3552786 chr3L_3543582_3543707;chr3L_3545322_3546131 chr3L_3515685_3516828 chr3L_3552787_3552864 91.67 93.94 90.32 88.52 92.59 89.29 87.50 94.44 92.22 93.75 88.46 86.67 90.91 91.18 91.89 91.38 92.86 89.29 88.89 94.05 89.29 87.50 90.91 88.89 92.86 88.00 87.18 88.89 92.86 92.50 91.18 92.00 96.43 91.23 94.44 91.67 92.86 91.89 92.86 91.67 88.89 94.20 93.10 93.18 93.33 88.24 88.46 91.94 92.65 86.36 91.49 93.33 93.33 88.89 94.59 95.24 87.50 94.64 K alternative_first_exon CG42268 chr3L - chr3L_9743400_9745975 chr3L_9743400_9743991 chr3L_9745976_9746533 chr3L_9743992_9744676 chr3L_9743153_9743399 0.00 NA 0.00 NA NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA 0.00 NA 0.00 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 NA NA NA NA NA NA 0.00 K alternative_first_exon Mhcl chr3R - chr3R_11897225_11897295;chr3R_11897225_11898410 chr3R_11897225_11897466 chr3R_11898411_11898689 chr3R_11897467_11897776 chr3R_11896266_11897224 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon Aef1 chr3L + chr3L_21427200_21428124;chr3L_21426802_21428124 chr3L_21427148_21428124 chr3L_21426528_21426801 chr3L_21426984_21427147 chr3L_21428125_21428230 3.03 7.14 5.00 5.26 0.00 4.76 3.03 0.00 1.92 6.67 0.00 2.17 0.00 0.00 4.35 5.13 5.56 0.00 4.17 1.85 0.00 8.70 3.85 0.00 7.69 0.00 4.00 10.00 0.00 5.00 7.41 14.29 6.67 2.86 6.25 0.00 0.00 6.67 0.00 4.65 5.26 5.13 0.00 0.00 0.00 5.00 0.00 2.86 4.35 0.00 4.00 4.76 0.00 0.00 3.45 0.00 0.00 2.86 K alternative_first_exon GstD9 chr3R - chr3R_8192634_8193249;chr3R_8192634_8194924 chr3R_8192634_8193260 chr3R_8194925_8194987 chr3R_8193261_8193286 chr3R_8191902_8192633 54.01 44.44 62.03 32.77 56.90 60.66 57.64 50.00 55.93 33.33 51.90 50.00 50.94 56.14 65.79 53.00 61.22 55.56 54.69 54.39 51.39 30.00 NA NA 35.71 50.00 NA 46.67 44.59 68.75 57.84 54.17 57.63 58.24 NA 53.85 32.14 NA 32.00 74.29 63.83 51.00 58.54 20.00 47.37 58.82 NA 62.50 56.10 NA NA 31.82 NA NA 57.14 23.53 NA 41.82 K alternative_first_exon Trf4-1 chrX + chrX_8455293_8457185,chrX_8456196_8457185,chrX_8455902_8457185,chrX_8455795_8457185,chrX_8454992_8457185;chrX_8455225_8457185;chrX_8455100_8457185 chrX_8454847_8457185 chrX_8455113_8455224;chrX_8454960_8455099 chrX_8454668_8454846 chrX_8457186_8457580 81.25 83.87 84.21 76.00 95.24 81.25 84.09 79.25 82.86 64.71 73.91 83.33 72.41 80.65 80.49 81.13 75.00 78.79 78.38 83.02 80.65 72.22 90.91 86.67 91.30 87.50 86.67 71.43 62.50 66.67 86.21 71.43 58.33 78.18 77.78 73.91 86.96 94.74 93.75 69.77 53.85 76.92 83.33 75.00 69.23 81.82 81.48 60.87 83.05 88.24 82.22 84.21 93.75 87.50 88.24 87.50 89.47 60.00 K alternative_first_exon Tm1 chr3R + chr3R_11117248_11120834;chr3R_11111077_11120834 chr3R_11115162_11120834 chr3R_11116668_11117247;chr3R_11110951_11111076 chr3R_11112721_11115161 chr3R_11120835_11120968 7.06 7.23 7.06 4.51 6.99 6.73 9.09 5.82 8.45 5.07 7.14 6.34 4.65 7.38 6.46 6.44 6.76 6.60 6.04 6.59 5.45 9.69 9.04 7.34 7.50 4.58 5.51 7.87 6.40 10.53 6.99 6.29 7.28 6.96 8.11 8.91 9.78 9.68 6.79 8.15 5.13 7.46 7.11 8.77 6.95 7.27 6.53 8.86 8.28 5.65 8.06 6.91 10.30 6.40 6.08 8.29 12.33 11.95 K alternative_first_exon Gdh chr3R - chr3R_19764278_19765677;chr3R_19764278_19768315 chr3R_19764278_19764344 chr3R_19768316_19768824 chr3R_19764345_19764487 chr3R_19763843_19764277 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 2.44 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_first_exon Sap-r chr3R - chr3R_26712627_26714397;chr3R_26712627_26714606 chr3R_26712627_26714382 chr3R_26714607_26714795 chr3R_26714383_26714548 chr3R_26712344_26712626 100.00 100.00 100.00 99.89 100.00 100.00 99.58 99.88 99.91 100.00 99.79 100.00 99.81 99.79 100.00 99.84 99.76 100.00 99.81 99.36 99.79 100.00 100.00 99.86 100.00 100.00 100.00 100.00 99.09 99.81 99.82 100.00 99.84 100.00 100.00 99.82 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.76 100.00 100.00 100.00 100.00 100.00 99.84 100.00 100.00 100.00 99.86 100.00 100.00 100.00 K alternative_first_exon CG1516,cbx chr2R - chr2R_5743716_5747874;chr2R_5743716_5743780 chr2R_5743716_5757801 chr2R_5747875_5748262;chr2R_5743781_5743915 chr2R_5757802_5757853 chr2R_5743589_5743715 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 K alternative_first_exon Mes2 chr3L + chr3L_22939041_22939369 chr3L_22939285_22939369 chr3L_22938759_22939040 chr3L_22939095_22939284 chr3L_22939370_22939670 17.18 19.43 30.71 36.84 23.33 28.70 47.14 46.01 33.33 6.09 21.28 32.83 42.97 41.88 23.13 56.41 35.19 24.39 44.17 31.16 28.97 5.84 11.88 10.84 11.32 26.45 15.22 6.54 9.27 8.58 32.74 12.16 3.61 40.72 12.45 11.36 10.41 9.76 10.71 10.97 5.77 27.08 34.78 15.35 5.96 12.70 14.51 6.49 40.45 15.69 17.86 18.59 11.18 15.66 27.59 16.20 17.18 7.83 K alternative_first_exon lin19 chr2R + chr2R_3804798_3805236;chr2R_3804614_3805236 chr2R_3804817_3805236,chr2R_3804840_3805236 chr2R_3804440_3804613 chr2R_3804683_3804816 chr2R_3805237_3806344 9.54 10.00 10.00 0.00 NA 0.00 13.64 9.09 18.18 NA 0.00 8.33 12.50 7.14 5.88 10.71 18.18 12.50 15.38 10.53 0.00 5.26 25.00 0.00 20.00 14.29 10.00 12.50 11.11 10.00 6.67 NA 14.29 17.86 9.09 8.33 9.09 NA NA 5.88 NA 5.26 10.00 0.00 NA 0.00 0.00 7.14 8.33 0.00 8.33 10.00 NA NA 9.09 14.29 11.11 30.00 K alternative_first_exon Tm1 chr3R + chr3R_11115162_11120834;chr3R_11111077_11120834 chr3R_11117248_11120834 chr3R_11112721_11115161;chr3R_11110951_11111076 chr3R_11116668_11117247 chr3R_11120835_11120968 92.72 92.77 92.57 95.49 93.01 93.27 90.91 93.96 91.55 94.93 92.86 93.66 95.35 92.62 93.54 93.56 93.24 93.40 93.96 93.21 94.55 90.31 90.96 92.66 92.50 95.42 94.49 92.13 93.60 89.47 92.66 93.01 92.72 93.04 91.89 91.09 90.22 90.32 93.21 91.85 94.87 92.32 92.89 91.23 92.51 92.36 93.47 91.14 91.72 93.91 91.94 92.55 89.09 93.60 93.92 91.71 87.21 87.65 K alternative_first_exon RpL10Ab chr3L + chr3L_11815991_11816299 chr3L_11816042_11816299 chr3L_11815952_11815990 chr3L_11815991_11816041 chr3L_11816300_11816455 0.06 0.00 0.00 0.00 0.18 0.00 0.42 0.09 0.00 0.23 0.00 0.17 0.00 0.00 0.00 0.15 0.00 0.19 0.00 0.12 0.00 0.18 0.00 1.69 1.85 0.16 NA 0.15 0.10 0.00 0.34 0.08 0.11 0.07 0.00 0.36 0.00 0.00 0.00 0.00 0.08 0.09 0.00 0.00 0.06 0.00 3.70 0.00 0.17 4.55 2.08 0.00 0.00 NA 0.00 0.00 1.54 0.08 K alternative_first_exon CG17549 chr2L - chr2L_19388570_19389427;chr2L_19388570_19389935,chr2L_19388570_19389926 chr2L_19388570_19389764 chr2L_19389936_19390070 chr2L_19389765_19389799 chr2L_19388474_19388569 40.38 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 30.77 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA K alternative_first_exon CG5973 chr2L + chr2L_7443388_7443583,chr2L_7440963_7443583;chr2L_7437789_7443583 chr2L_7440852_7443583,chr2L_7440959_7443583,chr2L_7441757_7443583 chr2L_7437506_7437788 chr2L_7440823_7440851 chr2L_7443584_7443832 63.12 66.67 70.97 63.08 62.16 60.00 61.40 67.47 62.02 61.11 66.32 60.27 70.97 57.14 49.06 64.29 70.45 70.45 66.67 60.76 63.89 70.00 56.14 47.62 68.75 63.64 67.57 58.33 53.85 63.16 56.67 75.00 61.11 59.26 76.47 47.06 55.36 NA 70.97 60.53 NA 61.90 63.89 NA 50.00 67.65 80.00 50.00 58.16 60.00 69.57 62.50 56.67 76.92 66.67 70.73 63.89 73.91 K alternative_first_exon UbcD6 chr3R - chr3R_776475_776590,chr3R_776475_778081;chr3R_776475_778174 chr3R_776475_776832 chr3R_778175_778406 chr3R_776833_776919 chr3R_776189_776474 1.03 2.86 0.00 0.00 1.23 2.40 0.68 0.76 0.37 0.00 0.00 1.49 0.68 0.00 0.00 0.37 1.72 3.77 0.00 0.78 1.90 0.65 2.67 2.40 1.12 0.61 2.26 2.44 2.99 1.04 0.51 1.03 0.00 1.25 1.02 0.91 2.47 1.56 1.52 1.06 0.97 1.17 0.79 4.23 0.85 0.64 1.47 0.69 0.71 2.26 4.07 2.91 2.00 1.25 1.03 0.77 1.19 1.01 K alternative_first_exon mdy chr2L + chr2L_16816720_16820111,chr2L_16816793_16820111 chr2L_16817460_16820111 chr2L_16816665_16816719 chr2L_16817108_16817459 chr2L_16820112_16820475 22.22 NA NA NA NA NA NA NA 22.22 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 10.00 25.00 NA NA NA NA NA NA NA NA NA K alternative_first_exon hebe chr2R - chr2R_5717365_5717821;chr2R_5717365_5718792;chr2R_5717365_5723947 chr2R_5717365_5721013,chr2R_5717365_5720983 chr2R_5718793_5718834;chr2R_5723948_5724147 chr2R_5721014_5721068 chr2R_5715606_5717364 98.41 97.67 98.08 97.10 100.00 100.00 100.00 98.46 99.10 100.00 100.00 98.44 92.31 97.78 98.00 96.36 97.37 97.30 97.06 98.02 97.30 100.00 96.00 100.00 100.00 100.00 100.00 100.00 95.65 96.88 100.00 98.04 95.74 98.41 100.00 100.00 97.22 100.00 96.43 100.00 100.00 97.92 100.00 96.43 100.00 97.92 95.65 98.18 98.94 100.00 97.22 100.00 100.00 96.00 97.83 96.97 100.00 100.00 K alternative_first_exon Nacalpha chr2R - chr2R_8648027_8648309,chr2R_8648027_8648305 chr2R_8648027_8648231 chr2R_8648310_8648355 chr2R_8648232_8648272 chr2R_8647203_8648026 73.99 88.46 71.43 72.00 41.67 64.29 80.95 60.00 81.63 NA 75.00 84.85 83.33 93.75 75.76 87.18 76.47 60.00 79.17 76.19 72.22 68.75 84.38 65.22 NA 73.33 80.00 16.33 80.00 73.68 81.82 75.00 52.63 74.29 71.43 NA 84.38 89.29 72.22 16.28 56.25 76.19 70.00 16.18 62.50 71.88 77.27 75.00 69.57 61.90 86.36 87.50 23.19 79.17 68.97 75.86 60.53 50.00 K alternative_first_exon Rab14 chr2L + chr2L_14355474_14357340 chr2L_14357272_14357340 chr2L_14355147_14355473 chr2L_14357041_14357271 chr2L_14357341_14357454 1.37 2.53 1.25 0.38 0.00 1.41 0.84 0.38 1.21 1.94 1.45 1.11 0.62 0.73 1.84 1.42 1.63 5.67 1.14 0.89 3.17 3.97 1.50 0.73 0.00 0.69 1.33 3.57 1.42 1.71 1.28 1.64 1.53 1.33 1.72 0.82 2.14 4.17 1.21 2.11 1.54 1.00 1.71 1.85 1.44 0.93 1.40 0.93 0.74 2.88 0.74 1.28 1.37 1.22 0.58 2.63 2.36 1.10 K alternative_first_exon qtc chr2L + chr2L_5063211_5066869 chr2L_5064582_5066869 chr2L_5062741_5063210 chr2L_5064374_5064581 chr2L_5066870_5067249 0.00 0.00 0.00 0.00 0.00 0.00 4.76 3.70 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 6.25 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.27 0.00 3.85 0.00 0.00 0.00 4.00 0.00 0.00 0.00 K alternative_first_exon Eip93F chr3R + chr3R_17786630_17821241 chr3R_17801777_17821241 chr3R_17786486_17786629 chr3R_17801348_17801776 chr3R_17821242_17821493 75.00 NA NA NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon pod1 chrX + chrX_6699642_6699710,chrX_6699505_6699710,chrX_6699283_6699710;chrX_6699040_6699710;chrX_6697800_6699710;chrX_6699509_6699710 chrX_6698211_6699710 chrX_6699018_6699039;chrX_6697720_6697799;chrX_6699418_6699508 chrX_6697930_6698210 chrX_6699711_6700251 6.98 5.56 3.57 5.66 3.57 8.00 1.67 6.98 5.88 5.56 6.90 8.89 4.35 3.70 0.00 4.08 4.76 0.00 7.69 5.00 6.90 5.71 11.11 7.14 11.11 5.26 11.11 11.11 10.53 15.79 2.70 16.67 11.54 6.82 7.69 6.67 6.45 8.33 5.56 10.00 18.18 7.55 4.35 19.05 NA 10.00 10.00 9.38 7.69 NA 11.11 6.25 11.11 NA 2.56 NA 12.50 10.53 K alternative_first_exon l(3)05822 chr3R - chr3R_14117226_14118276;chr3R_14117226_14123845 chr3R_14117226_14117376 chr3R_14123846_14124606 chr3R_14117377_14117489 chr3R_14115802_14117225 0.00 0.00 0.00 1.15 0.00 0.00 1.10 0.91 0.68 0.00 0.00 0.87 0.00 0.83 0.00 0.00 0.00 1.53 0.68 0.41 0.88 0.66 0.64 0.00 0.00 1.59 0.00 0.81 0.00 0.00 0.00 0.00 0.74 0.00 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.80 0.92 0.00 0.00 0.00 1.03 0.66 0.00 0.88 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.78 K alternative_first_exon CR42549,mura chr3R - chr3R_5373093_5375013;chr3R_5373093_5377037;chr3R_5373093_5377487 chr3R_5373093_5375499 chr3R_5377038_5377079;chr3R_5377488_5377528 chr3R_5375500_5375532 chr3R_5372520_5373092 0.00 NA NA 0.00 NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon Taf4 chr3L + chr3L_16106466_16107411 chr3L_16107242_16107411 chr3L_16106323_16106465 chr3L_16106893_16107241 chr3L_16107412_16107820 80.66 81.82 75.49 81.20 83.10 80.72 82.14 75.21 77.89 82.69 81.40 78.16 85.06 78.41 84.00 72.48 86.89 79.01 78.41 74.15 90.36 77.50 80.72 79.84 80.23 83.53 79.56 76.34 87.23 80.80 82.02 86.89 85.47 77.44 77.42 83.18 79.62 80.39 80.13 80.11 87.88 78.36 81.08 80.62 80.00 84.38 75.38 87.85 80.66 71.43 76.09 82.22 85.92 78.12 82.29 78.95 83.05 89.26 K alternative_first_exon CG17159,CG17162 chrXHet - chrXHet_69232_75198;chrXHet_69232_75524;chrXHet_69232_75430,chrXHet_69232_75279,chrXHet_69232_75250 chrXHet_69232_71032 chrXHet_75525_75553;chrXHet_75431_75487 chrXHet_71033_71449 chrXHet_69195_69231 50.00 58.82 40.62 25.93 43.48 47.62 52.27 40.54 46.15 30.00 14.29 53.12 35.29 54.55 51.72 60.98 52.63 22.22 52.00 50.00 21.43 86.67 51.85 52.00 50.00 56.10 60.87 57.14 44.44 63.16 42.31 27.27 50.00 40.48 61.90 78.79 40.00 50.00 41.18 53.12 77.78 53.19 41.18 54.55 54.55 58.33 45.45 63.64 50.85 44.44 50.00 43.48 50.00 50.00 40.00 50.00 50.00 61.54 K alternative_first_exon Cct1 chr3L + chr3L_1550352_1550713,chr3L_1546677_1550713,chr3L_1548401_1550713,chr3L_1547412_1550713;chr3L_1546307_1550713;chr3L_1549911_1550713 chr3L_1547590_1550713 chr3L_1546081_1546306;chr3L_1549880_1549910 chr3L_1547334_1547589 chr3L_1550714_1551288 1.32 0.58 1.53 0.96 1.42 1.18 1.43 1.41 1.79 0.00 1.32 3.15 2.50 1.74 2.09 1.28 2.24 2.29 1.46 1.77 1.11 4.43 0.97 1.46 2.48 2.86 2.07 3.26 1.32 0.61 1.19 0.87 0.47 1.45 0.74 1.40 1.05 0.67 1.61 1.32 1.15 1.12 1.48 2.00 0.63 0.47 0.50 0.58 1.55 0.87 2.04 1.21 0.99 0.83 0.99 1.23 0.58 0.00 K alternative_first_exon CG31705 chr2L - chr2L_11525668_11528120 chr2L_11525668_11526695 chr2L_11528121_11528201 chr2L_11526696_11526712 chr2L_11524568_11525667 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 0.00 0.00 0.00 0.00 K alternative_first_exon eIF-4E chr3L - chr3L_9394707_9395016;chr3L_9394707_9395379 chr3L_9394707_9395198 chr3L_9395380_9395565 chr3L_9395199_9395325 chr3L_9394140_9394706 2.33 4.35 3.03 2.00 0.00 0.00 2.94 1.35 2.41 0.00 3.70 2.92 6.90 2.63 2.56 1.89 0.00 3.45 3.92 1.11 4.00 10.00 0.00 0.00 3.33 0.00 1.64 0.00 3.12 2.50 2.27 0.00 6.45 3.57 0.00 2.33 3.23 0.00 2.78 1.72 4.00 1.14 0.00 4.00 0.00 5.56 0.00 4.17 1.04 2.00 0.00 0.00 2.08 2.78 3.51 5.41 1.52 4.62 K alternative_first_exon shep chr3L - chr3L_5212386_5269254;chr3L_5212386_5264439 chr3L_5212386_5240653 chr3L_5269255_5269463;chr3L_5264440_5266434 chr3L_5240654_5240943 chr3L_5212050_5212385 36.03 22.22 33.33 42.86 33.33 28.57 66.67 66.67 38.89 33.33 25.00 30.00 40.00 42.86 28.57 70.00 44.44 50.00 44.44 50.00 NA 36.84 23.53 38.46 33.33 42.86 27.27 NA 25.00 37.50 33.33 NA 26.67 33.33 37.50 36.36 35.71 27.27 27.27 29.41 44.44 30.43 16.67 25.00 22.22 42.86 28.57 NA 40.00 33.33 50.00 37.50 36.36 NA 50.00 28.57 45.45 38.89 K alternative_first_exon B4 chr2L - chr2L_13547162_13549131 chr2L_13547162_13547751 chr2L_13549132_13549323 chr2L_13547752_13547771 chr2L_13546911_13547161 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon att-ORFA,att-ORFB chr3R - chr3R_16379922_16380427 chr3R_16379922_16379974 chr3R_16380428_16380641 chr3R_16379975_16380131 chr3R_16379618_16379921 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon Klp10A chrX - chrX_11030129_11030277;chrX_11030129_11030272;chrX_11030129_11030899 chrX_11030129_11030651 chrX_11030273_11030510;chrX_11030900_11031056 chrX_11030652_11030703 chrX_11028913_11030128 9.84 16.67 16.67 13.48 21.43 11.43 9.23 9.41 13.76 12.00 20.00 7.14 14.29 22.22 15.69 12.09 12.50 20.00 12.28 13.64 17.78 10.96 4.76 7.14 6.67 8.51 3.23 3.33 10.26 8.51 9.43 4.76 6.45 4.90 9.38 5.56 11.36 6.45 13.79 9.84 3.45 13.68 12.20 3.45 11.76 5.88 4.35 7.14 8.16 0.00 5.56 3.70 11.76 5.56 12.73 10.71 9.52 12.20 K alternative_first_exon l(1)G0255 chrX + chrX_6573197_6573858;chrX_6572650_6573858 chrX_6573794_6573858 chrX_6572499_6572649 chrX_6573651_6573793 chrX_6573859_6573990 5.10 3.57 5.71 8.57 4.08 5.36 5.56 8.04 7.14 3.33 4.76 5.56 11.76 6.90 6.94 4.29 9.80 9.30 6.25 5.11 2.27 10.17 2.06 5.56 6.45 6.90 5.33 4.88 4.84 3.39 11.69 2.74 3.03 4.17 3.80 2.90 4.95 2.67 4.17 4.00 1.72 4.23 3.77 4.30 5.00 3.12 5.10 5.31 8.08 9.38 4.96 7.69 10.94 2.99 7.69 4.12 9.71 6.54 K alternative_first_exon Pfrx chrX + chrX_19400112_19400518;chrX_19389585_19400518;chrX_19392914_19400518;chrX_19398571_19400518;chrX_19390821_19400518 chrX_19400271_19400518 chrX_19389538_19389584;chrX_19392406_19392913;chrX_19398456_19398570;chrX_19390713_19390820 chrX_19399962_19400270 chrX_19400519_19402937 21.11 NA 25.00 50.00 NA NA 25.00 42.86 38.46 14.29 NA 25.00 NA 20.00 12.50 50.00 NA NA 25.00 22.22 NA 16.67 0.00 40.00 NA NA 33.33 0.00 NA NA NA NA 14.29 25.00 40.00 40.00 0.00 25.00 22.22 20.00 NA 33.33 0.00 12.50 0.00 NA 14.29 20.00 25.00 14.29 0.00 0.00 14.29 25.00 20.00 33.33 NA 20.00 K alternative_first_exon CG2118 chr3R - chr3R_27619193_27619598 chr3R_27619193_27619299 chr3R_27619599_27619628 chr3R_27619300_27619450 chr3R_27618427_27619192 100.00 95.65 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 95.83 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 NA 100.00 NA 100.00 NA NA 96.43 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 NA 97.56 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA K alternative_first_exon Msp-300 chr2L + chr2L_5144786_5146992 chr2L_5146704_5146992 chr2L_5142003_5144785 chr2L_5146386_5146703 chr2L_5146993_5147298 66.67 64.29 53.33 72.09 64.29 66.67 67.86 67.35 66.20 63.64 66.67 64.29 72.41 63.64 61.90 75.56 57.69 66.67 66.67 58.62 60.00 70.97 73.68 75.00 66.67 60.00 75.00 71.43 71.43 82.35 50.00 33.33 77.78 69.05 69.23 78.57 62.50 66.67 44.44 68.75 60.00 64.86 66.67 61.54 66.67 66.67 40.00 72.73 57.58 50.00 69.23 71.43 60.00 66.67 66.67 66.67 50.00 62.50 K alternative_first_exon Eip75B chr3L - chr3L_17962608_17986007 chr3L_17962608_17962743 chr3L_17986008_17986096 chr3L_17962744_17964539 chr3L_17962463_17962607 14.29 16.67 0.00 22.22 12.50 14.29 20.00 10.00 11.11 20.00 NA 12.50 20.00 16.67 20.00 14.29 0.00 20.00 14.29 15.38 NA 10.53 22.22 12.50 16.67 16.67 15.38 54.55 14.29 8.33 20.00 NA 25.00 11.11 14.29 16.67 25.00 14.29 6.67 16.67 20.00 9.09 NA 12.50 33.33 16.67 12.50 15.38 9.09 12.50 12.50 14.29 NA NA 14.29 25.00 NA NA K alternative_first_exon Hsp60 chrX + chrX_11002667_11004073 chrX_11003959_11004073 chrX_11002506_11002666 chrX_11003836_11003958 chrX_11004074_11005444 0.00 0.84 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.77 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.38 0.74 0.00 0.00 0.00 1.16 2.13 0.00 1.14 0.00 1.03 0.00 0.00 0.00 1.35 0.00 0.00 0.47 1.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.00 0.68 0.00 K alternative_first_exon CG13085,CG16771 chr2L + chr2L_19426895_19427208,chr2L_19426780_19427208;chr2L_19426808_19427208;chr2L_19427121_19427208 chr2L_19426699_19427208 chr2L_19426758_19426807;chr2L_19427087_19427120 chr2L_19426322_19426698 chr2L_19427209_19429224 82.09 82.42 76.47 82.79 78.46 82.09 82.81 84.44 78.26 82.86 77.46 79.74 79.66 84.88 82.00 74.82 66.27 79.55 84.95 77.37 74.47 87.67 79.82 79.59 83.93 81.32 84.44 84.48 94.03 88.61 81.91 88.46 96.52 78.03 82.14 75.61 79.75 88.41 85.29 93.70 93.15 77.58 83.33 87.25 90.62 89.91 80.77 95.88 79.49 80.36 79.59 81.58 78.57 81.13 78.35 82.28 83.17 87.50 K alternative_first_exon Rab5 chr2L - chr2L_2361586_2361738,chr2L_2361586_2362590,chr2L_2361586_2362869,chr2L_2361586_2364302,chr2L_2361586_2364480,chr2L_2361586_2364594,chr2L_2361586_2364836;chr2L_2361586_2364640,chr2L_2361586_2364312;chr2L_2361586_2362674;chr2L_2361586_2365060;chr2L_2361586_2363404 chr2L_2361586_2364889 chr2L_2364641_2364697;chr2L_2362675_2362761;chr2L_2365061_2365362;chr2L_2363405_2363501 chr2L_2364890_2364952 chr2L_2361160_2361585 38.16 34.69 40.87 38.16 45.28 40.22 41.45 43.44 40.66 41.82 50.98 40.98 38.46 43.36 39.42 40.29 40.52 37.27 41.96 37.76 46.90 25.58 38.94 35.05 40.24 43.86 30.77 18.33 19.54 15.89 37.40 21.74 12.90 41.67 24.39 11.76 47.86 44.62 44.92 20.00 13.54 37.96 38.30 20.37 24.58 18.67 24.77 15.91 40.17 41.57 28.42 40.45 20.97 26.09 40.88 30.30 36.64 14.67 K alternative_first_exon poly chr3R - chr3R_9188580_9190044;chr3R_9188580_9192481 chr3R_9188580_9190038 chr3R_9192482_9192629 chr3R_9190039_9190310 chr3R_9187574_9188579 38.46 42.86 46.67 30.95 48.15 39.29 48.15 38.30 46.58 35.00 44.00 40.38 37.50 48.00 41.46 39.58 54.17 60.78 56.25 40.23 38.24 35.29 33.33 45.71 38.46 48.39 24.07 25.00 42.86 34.09 31.71 38.24 35.09 42.86 34.21 28.21 46.51 43.33 29.17 35.29 30.61 48.44 42.86 52.50 47.73 30.51 30.23 38.00 36.21 42.11 29.23 39.13 27.59 34.15 38.71 27.03 27.08 30.61 K alternative_first_exon Cdk4 chr2R + chr2R_12467275_12468346,chr2R_12467202_12468346,chr2R_12467225_12468346,chr2R_12467241_12468346,chr2R_12468187_12468346,chr2R_12467474_12468346,chr2R_12467261_12468346,chr2R_12467227_12468346;chr2R_12467039_12468346,chr2R_12467432_12468346 chr2R_12468199_12468346 chr2R_12467024_12467038 chr2R_12467629_12468198 chr2R_12468347_12468520 16.67 10.00 7.41 17.14 23.08 10.53 16.00 13.64 13.56 20.00 16.67 14.89 10.71 9.09 10.71 12.82 15.00 23.81 12.90 11.84 21.05 23.08 18.75 20.00 33.33 11.76 26.32 22.22 21.43 27.27 19.23 27.27 18.75 13.64 20.00 16.67 10.00 21.43 23.08 23.53 27.27 12.50 14.29 20.00 6.67 9.09 20.00 16.67 15.09 9.52 19.05 13.33 21.43 8.33 20.83 14.29 17.39 12.50 K alternative_first_exon cu chr3R + chr3R_7023571_7030286;chr3R_7026291_7030286 chr3R_7029508_7030286 chr3R_7026138_7026290 chr3R_7028754_7029507 chr3R_7030287_7030553 0.00 9.09 0.00 0.00 8.33 0.00 5.88 4.55 4.17 NA NA 4.55 0.00 0.00 0.00 2.56 0.00 0.00 0.00 2.70 NA 0.00 0.00 10.00 0.00 7.14 14.29 33.33 NA 0.00 3.85 NA NA 0.00 0.00 0.00 12.50 0.00 12.50 0.00 NA 6.06 0.00 0.00 NA 8.33 0.00 0.00 0.00 NA 9.09 0.00 0.00 0.00 0.00 0.00 0.00 7.69 K alternative_first_exon CG16940 chr3L + chr3L_212783_212843,chr3L_212788_212843;chr3L_212308_212843 chr3L_212785_212843 chr3L_212275_212307 chr3L_212709_212784 chr3L_212844_213976 90.84 NA NA NA NA NA 81.82 NA 75.00 NA NA 91.67 NA NA NA NA NA NA NA 92.31 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 93.33 NA NA 90.00 NA 80.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA K alternative_first_exon Sep4 chrX - chrX_16580803_16588075 chrX_16580803_16581192 chrX_16588076_16588452 chrX_16581193_16581547 chrX_16580343_16580802 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA NA NA NA NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA NA NA NA NA NA 0.00 0.00 0.00 NA NA NA NA NA NA K alternative_first_exon CG4729 chr3L - chr3L_16377214_16378527;chr3L_16377214_16378919 chr3L_16377214_16377370,chr3L_16377214_16377266 chr3L_16378920_16379057 chr3L_16377371_16377471 chr3L_16377027_16377213 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon CG3835 chrX + chrX_2033170_2037024,chrX_2036036_2037024;chrX_2035640_2037024;chrX_2035852_2037024 chrX_2036963_2037024 chrX_2035521_2035639;chrX_2035729_2035851 chrX_2036765_2036962 chrX_2037025_2037281 7.69 8.16 6.12 14.00 13.33 10.53 10.53 10.14 12.05 5.77 13.33 4.29 8.33 17.14 9.26 11.11 10.71 9.09 10.26 5.88 3.33 6.58 7.14 6.25 3.33 9.09 10.26 12.50 4.41 6.15 9.62 7.50 7.63 10.29 5.88 1.69 6.67 7.50 6.35 4.20 9.86 6.85 10.81 7.84 4.44 6.61 5.88 3.57 7.69 11.76 9.86 7.41 4.08 3.92 8.77 8.33 8.70 4.55 K alternative_first_exon NnaD chrX + chrX_13594696_13600180;chrX_13591277_13600180 chrX_13598056_13600180 chrX_13590695_13591276 chrX_13597570_13598055 chrX_13600181_13600359 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA K alternative_first_exon scramb1 chr3L - chr3L_10215202_10216967 chr3L_10215202_10216005 chr3L_10216968_10217337 chr3L_10216006_10216358 chr3L_10214711_10215201 1.83 1.12 1.79 0.94 1.75 1.41 2.67 2.63 1.60 1.54 12.70 1.53 4.55 2.13 1.56 4.62 5.41 5.00 3.23 1.97 9.62 2.54 1.83 0.90 1.28 2.13 2.00 3.28 2.08 1.69 8.00 3.16 1.40 2.15 2.30 1.37 0.68 0.00 1.42 1.63 2.41 1.72 2.70 2.78 1.53 1.82 1.01 1.69 1.89 2.50 2.04 1.49 0.84 1.49 2.94 2.38 1.31 1.24 K alternative_first_exon PyK chr3R + chr3R_18194588_18196499;chr3R_18193391_18196499 chr3R_18195288_18196499 chr3R_18193234_18193390 chr3R_18194930_18195287 chr3R_18196500_18197889 1.26 1.28 1.29 1.93 2.25 1.01 2.30 1.50 0.98 1.18 0.89 1.56 1.44 0.96 1.14 0.85 1.03 2.14 1.14 2.34 1.09 0.44 0.61 1.83 2.12 0.92 1.35 2.58 1.65 2.10 1.26 1.94 3.63 1.22 2.21 2.05 2.10 0.88 1.44 1.13 1.05 0.88 1.14 1.29 2.90 0.87 1.24 2.00 0.73 0.90 1.20 1.69 1.44 1.07 1.05 1.11 1.31 1.03 K alternative_first_exon WASp chr3R - chr3R_24656400_24656715,chr3R_24656400_24656880,chr3R_24656400_24657416;chr3R_24656400_24657539 chr3R_24656400_24656940 chr3R_24657540_24657757 chr3R_24656941_24657035 chr3R_24656224_24656399 2.70 3.57 3.33 1.00 2.00 0.00 1.23 1.25 1.40 4.08 1.85 1.05 0.00 1.75 2.86 0.00 0.00 3.08 1.41 2.70 4.08 8.18 1.90 4.82 6.82 1.85 3.64 5.26 2.74 3.41 2.86 2.13 2.06 0.96 3.45 4.84 3.37 6.15 2.60 2.05 3.64 2.52 0.00 3.12 1.37 4.55 3.03 2.73 1.69 4.55 3.19 2.22 2.13 0.00 2.74 3.51 6.38 1.05 K alternative_first_exon Trx-2 chr2L + chr2L_9615252_9615301;chr2L_9613376_9615301 chr2L_9613541_9615301 chr2L_9613165_9613375 chr2L_9613379_9613540 chr2L_9615302_9615448 99.80 100.00 99.78 99.85 99.43 99.72 99.80 99.86 99.57 99.48 99.68 100.00 100.00 99.50 99.77 99.84 99.66 99.41 99.77 99.88 99.73 99.06 99.88 99.85 99.73 99.48 99.87 99.76 99.81 100.00 99.82 99.57 99.80 99.84 99.73 99.75 99.89 99.86 99.76 99.93 99.79 99.87 99.70 99.91 99.68 99.89 100.00 99.68 99.87 99.68 99.82 99.78 100.00 99.60 100.00 99.77 99.86 99.85 K alternative_first_exon CG1275 chr3L - chr3L_2253987_2255538;chr3L_2253987_2257111 chr3L_2253987_2256605 chr3L_2255539_2256011;chr3L_2257112_2257409 chr3L_2256606_2256758 chr3L_2253777_2253986 3.48 2.88 2.96 3.94 4.00 3.64 3.23 3.21 2.31 3.12 2.60 3.02 1.95 2.21 2.80 2.58 3.31 1.94 3.54 3.48 4.17 7.58 3.37 3.66 5.56 3.25 3.19 10.00 7.32 4.55 7.19 1.96 3.03 3.01 7.79 5.08 3.45 2.04 5.13 7.89 4.00 4.45 2.07 2.04 5.56 4.55 4.35 3.03 2.16 8.99 4.40 5.36 5.80 3.23 4.55 2.60 9.86 6.93 K alternative_first_exon Atf-2 chr2R + chr2R_20758769_20765661 chr2R_20764821_20765661 chr2R_20757590_20758768 chr2R_20764231_20764820 chr2R_20765662_20766625 33.33 40.00 20.00 35.71 25.00 20.00 33.33 25.00 40.00 33.33 25.00 50.00 50.00 0.00 50.00 40.00 50.00 33.33 50.00 50.00 33.33 12.50 22.22 66.67 33.33 33.33 33.33 20.00 25.00 33.33 33.33 NA 40.00 66.67 NA 71.43 50.00 25.00 66.67 33.33 25.00 25.00 33.33 28.57 33.33 50.00 50.00 25.00 66.67 66.67 50.00 33.33 33.33 50.00 33.33 33.33 20.00 33.33 K alternative_first_exon CG9775 chr3R - chr3R_466059_466296;chr3R_466059_467050 chr3R_466059_466737 chr3R_467051_467317 chr3R_466738_466757 chr3R_465735_466058 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.85 0.67 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.65 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 1.49 0.00 0.00 2.78 0.00 0.00 0.00 1.16 0.00 0.88 0.00 0.00 0.00 1.06 0.00 0.00 0.71 1.45 1.22 1.89 0.00 0.00 1.28 0.00 1.54 1.12 K alternative_first_exon NAT1 chr2R + chr2R_8803656_8805499,chr2R_8805206_8805499,chr2R_8803837_8805499,chr2R_8805260_8805499;chr2R_8803570_8805499 chr2R_8805410_8805499 chr2R_8803502_8803569 chr2R_8805363_8805409 chr2R_8805500_8808364 4.55 6.00 3.19 3.47 4.29 6.49 4.32 3.12 2.97 9.09 7.61 3.35 4.88 3.81 2.68 3.79 5.32 8.08 4.32 3.39 7.53 4.88 3.80 3.92 2.70 4.35 7.32 7.69 13.79 10.00 2.50 5.00 29.41 2.99 8.82 7.69 3.23 3.70 4.62 11.94 14.29 2.80 5.68 4.76 11.11 15.00 4.55 12.00 4.19 2.94 3.03 4.00 6.25 0.00 3.36 2.94 7.84 14.81 K alternative_first_exon Act5C chrX + chrX_5795047_5796722 chrX_5796130_5796722 chrX_5794897_5795046 chrX_5796013_5796129 chrX_5796723_5798210 21.99 14.81 19.31 9.47 22.19 16.77 21.48 19.47 13.26 17.93 25.36 16.19 24.22 11.16 21.25 13.70 15.56 23.95 12.99 23.55 20.96 37.89 29.50 33.94 21.58 22.34 43.15 42.93 46.59 23.69 14.99 25.11 17.87 12.72 24.68 43.00 23.75 24.21 32.75 24.23 17.92 17.83 11.77 41.84 29.59 21.35 21.99 34.31 16.36 25.41 14.50 18.42 30.35 34.10 17.42 21.72 31.40 25.00 K alternative_first_exon CR42549,mura chr3R - chr3R_5373093_5375013;chr3R_5373093_5375499;chr3R_5373093_5377487 chr3R_5373093_5377037 chr3R_5375500_5375532;chr3R_5377488_5377528 chr3R_5377038_5377079 chr3R_5372520_5373092 17.14 NA NA 14.29 NA NA NA NA 25.00 12.50 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 23.08 NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon CG34360 chr3R + chr3R_5701946_5756085 chr3R_5755449_5756085 chr3R_5700403_5701945 chr3R_5754639_5755448 chr3R_5756086_5756267 60.00 60.00 66.67 65.62 66.67 64.29 65.52 67.86 64.10 46.67 63.64 68.97 75.00 73.33 64.71 71.43 60.00 64.71 70.59 67.57 71.43 33.33 48.15 50.00 50.00 71.43 52.38 36.36 48.00 52.38 72.22 60.00 48.15 61.54 50.00 58.33 45.45 46.67 41.18 54.84 53.85 62.07 68.75 47.62 50.00 57.89 46.67 63.64 67.65 37.50 50.00 58.82 55.56 50.00 65.00 50.00 66.67 62.50 K alternative_first_exon CG12746 chr3R + chr3R_1391690_1391809,chr3R_1391737_1391809,chr3R_1390841_1391809;chr3R_1390705_1391809,chr3R_1390747_1391809 chr3R_1391176_1391809 chr3R_1390593_1390704 chr3R_1390888_1391175 chr3R_1391810_1392120 79.31 73.68 78.57 73.68 80.00 92.31 64.71 76.92 72.22 66.67 75.00 86.96 71.43 83.33 76.47 77.27 83.33 81.82 80.00 80.56 64.29 76.19 85.71 80.00 71.43 77.78 80.00 77.78 75.00 90.00 76.47 90.91 81.25 72.73 75.00 83.33 76.00 80.00 88.24 80.00 90.91 79.31 71.43 100.00 88.24 78.26 81.82 83.33 76.00 70.59 78.26 75.00 72.73 88.24 88.24 90.00 80.00 84.21 K alternative_first_exon wdb chr3R - chr3R_23406048_23406731,chr3R_23406048_23406794,chr3R_23406048_23406928;chr3R_23406048_23407723,chr3R_23406048_23407402 chr3R_23406048_23406865 chr3R_23407724_23407929 chr3R_23406866_23406997 chr3R_23405879_23406047 6.67 6.67 4.76 0.00 10.00 7.69 14.29 8.33 9.09 0.00 0.00 13.51 NA 21.74 5.00 19.05 6.67 NA 11.11 4.35 8.33 8.57 3.85 3.70 7.14 0.00 8.70 10.00 0.00 6.25 5.00 9.09 0.00 13.64 13.33 3.03 2.63 3.70 0.00 6.45 0.00 11.43 9.09 7.69 6.67 7.69 14.29 5.56 10.53 4.76 4.88 7.69 7.14 11.11 5.56 5.00 7.69 0.00 K alternative_first_exon Mnt chrX + chrX_3583579_3586985;chrX_3582529_3586985;chrX_3583516_3586985 chrX_3577483_3586985 chrX_3582270_3582528;chrX_3583398_3583515 chrX_3577386_3577482 chrX_3586986_3587965 5.26 NA 0.00 0.00 NA NA 6.67 11.11 5.00 NA NA 0.00 9.09 10.00 NA 5.26 12.50 NA 11.11 0.00 0.00 NA NA NA NA NA NA NA NA NA 10.00 NA NA 6.25 0.00 NA NA NA NA 0.00 NA 18.18 0.00 NA NA NA NA 0.00 6.25 NA NA NA NA NA NA NA NA NA K alternative_first_exon Pfrx chrX + chrX_19400275_19400515,chrX_19400112_19400515;chrX_19392914_19400515;chrX_19398571_19400515;chrX_19400271_19400515 chrX_19390821_19400515 chrX_19392406_19392913;chrX_19398456_19398570;chrX_19399962_19400270 chrX_19390713_19390820 chrX_19400516_19402937 8.33 9.09 0.00 12.50 20.00 0.00 7.14 21.43 5.88 0.00 0.00 7.14 14.29 11.11 0.00 12.50 0.00 0.00 10.00 8.33 0.00 NA 7.14 9.09 12.50 16.67 0.00 11.11 28.57 12.50 18.18 0.00 6.25 20.00 22.22 0.00 14.29 0.00 8.33 20.00 0.00 0.00 0.00 6.67 0.00 8.33 11.11 10.00 5.56 7.69 0.00 0.00 0.00 NA 25.00 12.50 12.50 10.00 K alternative_first_exon coro chr2R - chr2R_2754447_2760059,chr2R_2754447_2760038 chr2R_2754447_2754501 chr2R_2760060_2760274 chr2R_2754502_2754562 chr2R_2754192_2754446 0.00 0.00 0.00 0.00 1.82 0.00 1.20 0.00 0.67 0.00 0.00 0.84 0.00 0.00 0.00 1.20 0.00 1.59 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 1.56 0.00 1.23 0.00 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 K alternative_first_exon CG11255 chr3L - chr3L_13014658_13015537 chr3L_13014658_13014727 chr3L_13015538_13015844 chr3L_13014728_13014759 chr3L_13014174_13014657 1.14 0.00 1.35 1.05 1.67 0.00 1.22 2.13 0.71 2.44 8.47 0.81 0.00 1.69 1.22 0.00 1.79 8.06 1.67 0.00 1.59 0.00 1.12 1.33 0.00 1.75 1.49 0.00 1.85 1.43 1.33 1.52 2.56 2.00 0.00 0.00 1.14 0.00 1.43 0.92 0.00 0.76 0.00 0.00 1.39 1.09 2.44 0.00 1.52 0.00 1.30 1.85 0.00 0.00 1.14 1.28 0.00 0.84 K alternative_first_exon blot chr3L - chr3L_17402973_17414453 chr3L_17402973_17408320 chr3L_17414454_17414612 chr3L_17408321_17408861 chr3L_17402325_17402972 0.00 NA NA NA NA NA NA NA 16.67 0.00 NA 0.00 NA NA NA NA NA NA NA NA NA 12.50 NA 0.00 NA NA NA NA NA NA 0.00 NA 0.00 NA NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA 0.00 9.09 NA 0.00 NA NA NA NA NA NA 0.00 K alternative_first_exon Idh chr3L - chr3L_8351816_8353428;chr3L_8351816_8353892 chr3L_8351816_8351949 chr3L_8353893_8354031 chr3L_8351950_8352117 chr3L_8351656_8351815 100.00 NA NA NA NA NA 100.00 100.00 100.00 NA NA 100.00 NA 100.00 100.00 100.00 NA NA NA 100.00 100.00 NA 90.00 100.00 100.00 NA 100.00 NA NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA NA 90.00 NA 100.00 100.00 NA NA 85.71 NA 90.91 100.00 NA 100.00 NA NA NA 100.00 NA 90.91 100.00 K alternative_first_exon toc chr2L - chr2L_3071765_3080650 chr2L_3071765_3072155 chr2L_3080651_3080887 chr2L_3072156_3072308 chr2L_3071569_3071764 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 2.56 0.00 2.56 2.94 0.00 0.00 0.00 0.00 5.00 0.00 0.00 4.17 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 K alternative_first_exon egh chrX + chrX_2487965_2489758,chrX_2489242_2489758,chrX_2487205_2489758;chrX_2483540_2489758 chrX_2486382_2489758 chrX_2482534_2483539 chrX_2486156_2486381 chrX_2489759_2491048 4.35 0.00 5.00 4.76 0.00 0.00 3.70 6.25 4.76 9.09 5.88 6.67 4.55 4.35 9.52 3.70 0.00 5.00 0.00 7.89 7.69 4.55 6.90 4.76 0.00 4.55 0.00 6.25 5.00 4.17 4.17 6.67 3.45 2.78 6.25 4.35 0.00 7.14 0.00 2.50 0.00 2.56 0.00 3.85 0.00 4.17 0.00 2.94 2.78 10.00 7.69 5.88 6.25 0.00 3.85 6.67 5.26 4.00 K alternative_first_exon CG2258 chrX - chrX_7993650_7995101;chrX_7993650_7995978,chrX_7993650_7995119 chrX_7993650_7993741 chrX_7995979_7996071 chrX_7993742_7994104 chrX_7993384_7993649 46.15 NA NA 66.67 NA NA 42.86 44.44 45.45 NA 80.00 40.00 42.86 66.67 NA 41.67 NA NA 80.00 63.64 NA NA 22.22 NA 28.57 NA NA NA NA 42.86 66.67 NA NA 62.50 NA NA NA NA 50.00 46.15 NA 53.85 NA NA NA NA NA 60.00 43.75 NA 42.86 100.00 NA NA 40.00 NA NA 57.14 K alternative_first_exon Arf51F chr2R + chr2R_11210536_11210628;chr2R_11210218_11210628,chr2R_11210247_11210628 chr2R_11210546_11210628 chr2R_11209979_11210217 chr2R_11210327_11210545 chr2R_11210629_11210646 57.14 55.17 62.50 53.85 50.00 52.63 48.15 50.00 55.56 52.94 50.00 29.41 52.38 71.43 60.00 57.89 55.56 66.67 64.29 55.56 45.45 73.68 48.39 59.26 35.48 40.00 51.85 85.71 65.00 55.56 55.56 61.90 69.57 56.25 46.67 41.94 56.52 58.82 57.69 57.58 70.83 63.16 58.33 59.09 45.95 68.97 61.54 75.00 69.57 57.89 54.55 44.44 61.11 57.14 68.18 57.14 51.85 78.26 K alternative_first_exon yu chrX - chrX_5311408_5312383;chrX_5311408_5313001;chrX_5311408_5314484 chrX_5311408_5314226 chrX_5313002_5313124;chrX_5314485_5314896 chrX_5314227_5314369 chrX_5310223_5311407 0.00 1.54 0.00 0.00 0.00 0.00 0.67 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.59 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 N alternative_first_exon Pvr chr2L - chr2L_8230332_8230589;chr2L_8230332_8239691,chr2L_8230332_8239074 chr2L_8230332_8230617 chr2L_8239692_8239875 chr2L_8230618_8230673 chr2L_8230125_8230331 6.90 7.58 5.84 4.76 8.64 7.80 8.76 7.59 10.70 4.41 13.13 9.12 12.50 11.24 7.06 7.51 9.15 8.93 7.23 8.66 8.46 5.56 5.43 5.17 6.45 6.90 5.43 0.00 2.50 4.63 7.30 3.64 3.33 8.10 4.27 1.61 9.18 1.03 7.21 2.93 2.00 10.95 16.78 4.84 6.98 2.70 7.69 0.78 8.62 5.00 7.10 4.96 2.67 5.45 9.72 3.00 3.90 1.25 K alternative_first_exon larp chr3R - chr3R_24151542_24156502;chr3R_24151542_24159430;chr3R_24151542_24151775 chr3R_24151542_24153880 chr3R_24159431_24160429;chr3R_24151776_24151963 chr3R_24153881_24154005 chr3R_24151211_24151541 1.83 2.11 2.13 1.98 0.00 5.93 3.41 2.93 1.76 0.91 4.35 2.36 5.05 5.45 3.80 9.40 0.82 2.33 2.59 2.78 3.94 2.44 1.39 0.98 1.01 4.20 1.83 0.96 0.98 2.07 15.05 1.01 0.49 2.03 0.98 1.92 0.48 0.00 0.57 1.73 1.47 1.06 1.65 2.71 0.52 1.68 2.63 0.64 1.82 2.30 2.05 0.00 0.40 2.31 3.12 1.40 1.32 1.10 K alternative_first_exon cher chr3R - chr3R_12920472_12926709;chr3R_12920472_12923759 chr3R_12920472_12921085 chr3R_12926710_12926800;chr3R_12923760_12924080 chr3R_12921086_12921266 chr3R_12920331_12920471 0.26 0.26 0.55 0.18 0.00 0.66 0.77 0.32 0.34 0.00 0.27 0.24 0.43 0.32 0.00 0.19 0.00 0.26 0.50 0.13 0.97 0.21 0.18 0.24 0.37 0.37 0.51 0.37 0.00 0.00 0.53 0.56 0.00 0.17 0.75 0.00 0.40 0.00 0.00 0.22 0.76 0.14 0.00 0.28 0.60 0.00 0.00 0.45 0.30 0.00 0.19 0.37 0.54 0.00 0.25 0.00 0.67 0.61 K alternative_first_exon CG9485 chr2R + chr2R_17201538_17201928,chr2R_17200086_17201928,chr2R_17201333_17201928,chr2R_17200593_17201928,chr2R_17201485_17201928;chr2R_17200246_17201928,chr2R_17200289_17201928 chr2R_17201222_17201928 chr2R_17200185_17200245 chr2R_17200926_17201221 chr2R_17201929_17202269 76.47 69.70 87.80 82.00 76.47 78.12 76.19 84.85 78.75 60.00 81.25 82.19 88.89 78.79 85.37 77.19 73.33 84.21 82.05 82.42 88.57 42.86 76.00 73.53 72.73 75.68 77.78 54.55 73.08 67.86 71.74 70.59 75.00 75.93 80.00 92.00 69.57 66.67 64.10 71.11 84.62 84.13 88.46 66.67 73.68 78.12 72.22 82.61 85.71 60.00 71.43 76.47 81.25 75.00 62.96 66.67 80.00 88.00 K alternative_first_exon CG32549 chrX - chrX_18302893_18303916 chrX_18302893_18303082 chrX_18303917_18304168 chrX_18303083_18303211 chrX_18302551_18302892 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 K alternative_first_exon synj chr2R + chr2R_17967711_17968579 chr2R_17968044_17968579 chr2R_17967676_17967710 chr2R_17967948_17968043 chr2R_17968580_17970142 4.26 0.00 2.63 6.12 0.00 0.00 11.54 0.00 2.33 NA 0.00 4.35 0.00 5.88 6.06 0.00 6.45 4.00 2.70 4.92 4.17 12.50 4.55 14.29 0.00 7.69 15.79 9.09 NA 7.14 10.00 NA NA 0.00 16.67 NA 2.94 0.00 8.70 20.00 NA 1.64 0.00 7.69 NA NA NA NA 3.92 NA 18.75 0.00 NA NA 4.55 NA 0.00 NA N alternative_first_exon SMSr chr3L - chr3L_7369009_7370035;chr3L_7369009_7373720 chr3L_7369009_7369748 chr3L_7373721_7374617 chr3L_7369749_7369880 chr3L_7368505_7369008 13.21 10.31 15.22 18.92 16.67 13.33 21.74 15.12 9.14 20.51 17.07 13.82 21.74 10.29 12.20 24.14 20.00 21.74 16.44 13.10 15.38 6.15 8.04 11.11 11.36 13.56 13.51 14.29 10.71 12.96 10.29 8.51 9.38 21.51 23.81 21.28 9.76 11.34 5.13 15.83 11.43 9.26 15.69 13.51 12.50 11.84 12.70 16.98 11.20 11.63 11.76 16.39 11.32 13.64 13.25 8.06 11.54 13.21 K alternative_first_exon Pdp1 chr3L - chr3L_7813130_7846282;chr3L_7813130_7860340;chr3L_7813130_7823486 chr3L_7813130_7818683 chr3L_7846283_7847289;chr3L_7860341_7860472;chr3L_7823487_7824927 chr3L_7818684_7820387 chr3L_7813088_7813129 25.00 20.00 50.00 0.00 0.00 0.00 25.00 25.00 25.00 25.00 33.33 16.67 0.00 0.00 66.67 25.00 25.00 33.33 0.00 23.53 50.00 50.00 14.29 25.00 50.00 0.00 50.00 20.00 40.00 33.33 20.00 33.33 66.67 50.00 25.00 20.00 25.00 33.33 25.00 66.67 33.33 0.00 50.00 33.33 33.33 33.33 33.33 25.00 25.00 33.33 20.00 25.00 0.00 33.33 0.00 33.33 20.00 50.00 K alternative_first_exon CG5946 chr3L - chr3L_11812008_11814933 chr3L_11812008_11812920 chr3L_11814934_11815282 chr3L_11812921_11813049 chr3L_11811354_11812007 45.24 24.24 46.88 35.29 47.62 46.15 48.48 42.86 49.21 47.06 54.55 47.54 44.00 53.57 57.89 48.94 36.00 33.33 46.88 50.00 52.38 43.75 38.30 39.02 29.17 48.48 42.86 50.00 41.67 32.00 47.06 48.39 48.89 39.29 34.62 33.33 46.67 39.29 33.33 39.22 44.44 47.22 53.57 40.54 45.24 40.35 41.38 48.08 50.68 37.50 42.22 48.28 46.67 33.33 53.66 35.29 38.24 52.08 K alternative_first_exon yu chrX - chrX_5311408_5312383;chrX_5311408_5313001;chrX_5311408_5314226 chrX_5311408_5314484 chrX_5313002_5313124;chrX_5314227_5314369 chrX_5314485_5314896 chrX_5310223_5311407 97.06 96.92 97.89 96.13 98.44 98.77 90.60 96.30 96.21 96.55 97.06 94.90 94.79 95.41 97.48 96.76 98.88 92.68 94.57 97.19 95.71 97.87 98.95 98.46 100.00 95.60 98.63 96.15 98.51 100.00 95.86 93.10 98.26 94.50 98.33 96.97 100.00 96.15 96.23 100.00 97.50 98.00 94.74 95.12 100.00 98.08 100.00 96.99 100.00 96.67 98.80 96.83 100.00 100.00 96.77 96.97 100.00 97.65 K alternative_first_exon fs(1)h chrX - chrX_7954192_7954783,chrX_7954192_7955332;chrX_7954192_7955408,chrX_7954192_7955296 chrX_7954192_7954935,chrX_7954192_7954909 chrX_7955409_7955469 chrX_7954936_7954950 chrX_7953900_7954191 80.95 84.38 88.46 89.36 88.00 85.71 79.76 78.35 84.72 82.35 82.86 84.27 88.71 86.21 82.35 78.30 80.36 81.48 82.43 85.00 84.09 63.64 64.44 60.00 73.68 80.49 62.07 76.47 80.00 53.85 86.49 NA 71.43 79.21 66.67 75.00 70.83 75.00 76.19 82.93 NA 81.82 86.05 86.11 NA 80.95 NA 78.12 83.18 NA 68.75 63.16 84.62 NA 88.10 NA NA 75.00 K alternative_first_exon capu chr2L - chr2L_3887557_3888648;chr2L_3887557_3889430 chr2L_3887557_3893261 chr2L_3888649_3888824;chr2L_3889431_3890031 chr2L_3893262_3893604 chr2L_3886984_3887556 83.33 77.19 80.39 84.62 84.21 81.40 76.67 77.14 76.56 83.87 83.72 79.57 68.89 80.00 81.48 64.91 77.27 84.48 62.00 78.90 76.60 83.33 82.18 91.86 85.42 69.23 88.75 81.08 87.50 84.62 76.79 86.36 86.02 76.32 84.21 85.25 89.00 90.38 91.84 85.82 83.93 79.81 78.79 74.65 88.89 81.69 89.80 83.33 80.95 91.80 87.23 77.50 92.31 88.89 80.60 87.50 91.49 93.59 K alternative_first_exon GATAe chr3R + chr3R_11835130_11841949 chr3R_11838506_11841949 chr3R_11834827_11835129 chr3R_11837986_11838505 chr3R_11841950_11842287 84.62 90.00 71.43 76.92 87.50 81.82 84.62 91.67 83.33 75.00 83.33 80.00 88.89 75.00 84.62 76.92 100.00 82.61 90.48 78.95 83.33 76.47 77.78 85.71 87.50 92.31 84.62 75.00 83.33 85.71 81.82 100.00 90.00 88.24 100.00 88.89 80.00 100.00 81.82 75.00 100.00 80.77 90.91 80.00 100.00 100.00 83.33 91.67 83.33 100.00 76.92 80.00 100.00 100.00 84.62 100.00 92.86 92.31 K alternative_first_exon crq chr2L - chr2L_450879_452576 chr2L_450879_451229 chr2L_452577_453023 chr2L_451230_451302 chr2L_450666_450878 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_first_exon Bsg chr2L + chr2L_8083458_8089356;chr2L_8083522_8089356 chr2L_8088454_8089356 chr2L_8083422_8083521 chr2L_8088306_8088453 chr2L_8089357_8089736 30.00 NA NA 30.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon th chr3L - chr3L_16033166_16033537,chr3L_16033166_16034018,chr3L_16033166_16037613;chr3L_16033166_16039584;chr3L_16033166_16043557 chr3L_16033166_16035506 chr3L_16039585_16039937;chr3L_16043558_16043755 chr3L_16035507_16035665 chr3L_16031505_16033165 0.52 0.62 0.55 0.42 0.41 0.32 0.63 0.49 0.76 0.55 0.71 0.88 0.47 0.65 0.77 0.55 0.52 0.71 0.36 3.03 1.32 1.69 0.47 0.83 0.84 0.27 0.82 5.13 2.52 0.40 0.33 0.39 0.85 0.37 0.32 0.70 2.15 0.00 0.50 0.82 0.66 0.82 0.43 0.31 1.38 0.60 0.34 0.70 0.40 0.29 0.42 0.33 0.51 0.00 0.43 0.37 0.00 0.42 K alternative_first_exon CG1746 chr3R - chr3R_27043667_27044393;chr3R_27043667_27044664 chr3R_27043667_27044514 chr3R_27044665_27044772 chr3R_27044515_27044626 chr3R_27043462_27043666 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 0.05 0.00 0.00 0.04 0.00 0.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.07 0.00 0.00 0.06 0.09 0.00 0.00 0.00 0.06 0.11 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.09 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon Cct1 chr3L + chr3L_1550352_1550713,chr3L_1546677_1550713,chr3L_1548401_1550713,chr3L_1547412_1550713;chr3L_1546307_1550713;chr3L_1547590_1550713 chr3L_1549911_1550713 chr3L_1546081_1546306;chr3L_1547334_1547589 chr3L_1549880_1549910 chr3L_1550714_1551288 0.66 1.16 1.02 0.96 0.71 0.59 0.71 0.35 0.51 1.22 0.66 0.70 0.83 0.58 1.05 0.00 1.49 0.00 0.97 0.29 0.56 0.74 0.48 0.49 0.00 0.00 0.52 2.17 1.32 0.61 0.40 0.87 0.47 0.36 0.74 0.00 2.11 0.67 0.54 1.32 0.00 0.28 0.74 0.67 1.27 0.00 0.00 0.58 1.24 0.87 0.41 0.61 0.99 0.83 0.99 0.00 0.00 1.01 K alternative_first_exon Pdp1 chr3L - chr3L_7813130_7846282;chr3L_7813130_7818683;chr3L_7813130_7860340 chr3L_7813130_7823486 chr3L_7846283_7847289;chr3L_7818684_7820387;chr3L_7860341_7860472 chr3L_7823487_7824927 chr3L_7813088_7813129 50.00 40.00 50.00 33.33 100.00 100.00 25.00 25.00 50.00 75.00 33.33 66.67 0.00 33.33 33.33 50.00 25.00 33.33 66.67 35.29 50.00 50.00 71.43 50.00 50.00 100.00 50.00 80.00 60.00 66.67 40.00 66.67 33.33 50.00 50.00 80.00 50.00 66.67 50.00 33.33 66.67 50.00 50.00 33.33 33.33 33.33 33.33 75.00 25.00 66.67 60.00 25.00 66.67 33.33 50.00 33.33 20.00 50.00 K alternative_first_exon aPKC chr2R - chr2R_10836930_10837063;chr2R_10836930_10838191 chr2R_10836930_10848890 chr2R_10837064_10837251;chr2R_10838192_10838414 chr2R_10848891_10849011 chr2R_10836879_10836929 100.00 96.77 97.67 100.00 97.14 97.22 100.00 100.00 99.02 93.33 100.00 98.46 100.00 100.00 100.00 100.00 100.00 97.44 100.00 98.55 97.14 98.11 100.00 100.00 100.00 100.00 100.00 95.00 95.45 100.00 97.92 100.00 97.14 98.73 95.45 100.00 97.73 97.56 100.00 98.15 94.12 100.00 100.00 100.00 100.00 95.45 100.00 100.00 98.59 100.00 97.83 97.30 100.00 100.00 98.00 100.00 100.00 94.74 K alternative_first_exon CG33170 chr3L + chr3L_22858026_22858870 chr3L_22858797_22858870 chr3L_22857700_22858025 chr3L_22858586_22858796 chr3L_22858871_22858924 15.79 15.79 23.81 17.02 11.76 26.32 20.00 16.22 13.73 7.14 18.75 26.47 38.89 14.29 22.73 25.00 16.67 13.33 16.00 14.29 6.67 15.79 20.83 17.39 21.43 15.79 22.22 15.38 15.79 10.53 13.04 7.69 8.82 20.69 21.43 41.67 10.00 26.67 28.57 15.15 15.15 15.00 26.32 7.14 2.56 9.76 15.62 2.94 23.53 15.15 41.18 18.52 22.22 21.43 13.33 13.33 16.67 5.36 K alternative_first_exon CG11347 chr3L + chr3L_4407385_4417819;chr3L_4414458_4417819 chr3L_4414859_4417819 chr3L_4407145_4407384;chr3L_4414360_4414457 chr3L_4414667_4414858 chr3L_4417820_4418494 45.30 NA 37.50 42.11 NA NA 50.00 40.00 33.33 NA NA 57.14 57.14 55.56 11.11 47.62 71.43 NA 46.15 25.00 NA 30.00 40.00 62.50 33.33 NA NA 22.22 44.44 37.50 54.55 NA 28.57 63.64 50.00 33.33 50.00 NA NA 46.15 NA 58.33 NA 44.44 NA NA 31.25 66.67 54.55 55.56 43.75 NA NA NA 50.00 NA NA 28.57 K alternative_first_exon yin chrX - chrX_3759473_3761971 chrX_3759473_3760535 chrX_3761972_3762359 chrX_3760536_3760750 chrX_3759391_3759472 8.71 10.00 20.00 10.00 0.00 0.00 0.00 8.33 7.14 0.00 25.00 0.00 NA 12.50 0.00 0.00 0.00 0.00 0.00 15.38 16.67 10.00 0.00 6.67 0.00 0.00 0.00 NA 16.67 18.18 14.29 14.29 12.50 10.00 10.00 12.50 0.00 11.11 9.09 10.00 16.67 8.33 0.00 16.67 NA 12.50 0.00 16.67 0.00 0.00 6.67 9.09 0.00 10.00 14.29 0.00 0.00 12.50 K alternative_first_exon CG11984 chr3R - chr3R_4839215_4839655,chr3R_4839215_4839728,chr3R_4839215_4839799,chr3R_4839215_4839889,chr3R_4839215_4840394;chr3R_4839215_4839561;chr3R_4839215_4839851;chr3R_4839215_4839300;chr3R_4839215_4839966 chr3R_4839215_4840589,chr3R_4839215_4840474 chr3R_4839562_4839754;chr3R_4839852_4839944;chr3R_4839301_4839365;chr3R_4839967_4840095 chr3R_4840590_4840610 chr3R_4839038_4839214 57.53 58.33 50.00 56.00 52.00 50.00 50.00 49.12 55.95 61.11 67.74 55.00 55.17 54.55 53.12 58.33 48.00 61.54 45.71 60.71 76.92 68.25 52.50 36.00 50.00 54.29 59.52 70.37 60.00 74.19 53.85 61.90 63.27 50.00 53.33 65.52 68.29 57.14 41.18 72.73 62.07 57.53 46.88 75.61 67.74 46.67 61.29 58.97 53.85 47.50 58.82 60.61 65.38 53.33 57.89 62.07 50.00 59.38 K alternative_first_exon RpL27A chr2L - chr2L_4458058_4458120,chr2L_4458058_4458140,chr2L_4458058_4458274;chr2L_4458058_4458288 chr2L_4458058_4458162 chr2L_4458289_4458373 chr2L_4458163_4458270 chr2L_4457740_4458057 24.70 27.21 6.03 2.46 9.14 5.95 17.61 2.21 13.49 34.86 8.28 17.26 9.40 23.21 4.91 11.33 5.29 15.29 4.12 10.18 8.75 22.67 46.21 37.88 41.10 6.02 49.52 40.00 59.32 41.18 34.50 19.62 26.79 4.78 40.00 45.54 49.73 49.17 50.36 48.37 39.35 5.41 4.35 43.33 15.35 34.58 41.13 33.33 11.08 38.71 50.44 33.67 27.10 55.47 5.14 46.84 24.70 22.40 K alternative_first_exon Taz chr2R - chr2R_8642256_8642330;chr2R_8642256_8642580 chr2R_8642256_8643440 chr2R_8642331_8642400;chr2R_8642581_8642908 chr2R_8643441_8643915 chr2R_8641913_8642255 100.00 100.00 100.00 100.00 95.24 95.00 100.00 96.88 98.11 100.00 100.00 97.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_first_exon CG10249 chr2R - chr2R_10793459_10794529,chr2R_10793459_10794992;chr2R_10793459_10797728 chr2R_10793459_10793522 chr2R_10797729_10798374 chr2R_10793523_10793586 chr2R_10793019_10793458 33.33 NA 33.33 NA NA 33.33 NA 27.78 45.45 NA NA 35.29 46.67 NA NA 28.57 NA NA NA 52.38 36.36 0.00 NA 33.33 NA 40.00 NA NA NA NA 36.36 NA NA 33.33 NA 9.09 37.50 NA 25.00 0.00 NA 50.00 NA 10.00 NA NA NA 6.25 33.33 NA 50.00 NA 16.67 NA 38.46 NA NA 7.69 K alternative_first_exon RN-tre chr2R - chr2R_9877492_9878070 chr2R_9877492_9877898 chr2R_9878071_9878191 chr2R_9877899_9877916 chr2R_9877190_9877491 1.92 3.33 1.10 2.40 5.77 0.00 1.27 2.47 3.11 1.96 1.67 1.44 0.00 1.16 3.06 2.46 4.48 3.03 3.92 1.69 0.00 2.38 1.27 3.23 4.88 0.00 1.59 7.69 2.22 0.81 1.65 1.23 1.84 3.08 0.00 0.00 0.00 4.35 0.00 0.70 3.09 2.08 4.29 0.00 2.78 2.53 0.00 1.42 2.65 2.78 1.49 2.22 4.08 0.00 1.12 1.89 1.92 2.17 K alternative_first_exon CG3363 chr2R + chr2R_20074400_20075879 chr2R_20075509_20075879 chr2R_20074226_20074399 chr2R_20075200_20075508 chr2R_20075880_20077230 66.67 75.00 69.23 50.00 60.00 69.23 68.75 71.43 61.90 50.00 80.00 62.96 63.64 54.55 57.14 50.00 55.56 70.00 63.64 70.37 55.56 66.67 75.00 72.73 71.43 63.64 71.43 72.73 66.67 55.56 61.54 NA 66.67 36.84 75.00 50.00 81.82 66.67 84.62 78.57 NA 57.14 66.67 90.00 66.67 60.00 NA 57.69 56.67 87.50 69.23 71.43 NA NA 64.71 66.67 NA 46.15 K alternative_first_exon CG3409 chr2R - chr2R_2593704_2602608 chr2R_2593704_2595149 chr2R_2602609_2603370 chr2R_2595150_2595463 chr2R_2592740_2593703 5.26 8.00 3.85 4.88 0.00 3.85 5.26 2.22 3.12 11.54 5.26 1.96 11.11 6.67 6.90 2.44 3.45 4.00 2.86 1.79 4.76 10.87 5.00 3.45 9.09 7.14 10.34 23.53 8.33 3.33 2.70 10.00 4.76 3.85 3.85 0.00 8.11 5.00 10.34 2.13 6.67 5.66 4.17 5.26 7.69 4.76 5.00 7.84 5.36 7.14 6.45 0.00 5.56 11.11 5.26 0.00 11.11 5.26 K alternative_first_exon Sply chr2R - chr2R_12977881_12979314 chr2R_12977881_12978863 chr2R_12979315_12979462 chr2R_12978864_12979161 chr2R_12977219_12977880 97.40 98.39 98.70 87.10 94.34 97.40 94.44 97.14 98.72 98.15 96.15 95.45 97.67 98.44 98.88 96.20 96.15 98.39 96.97 98.27 95.24 94.34 98.15 98.99 96.08 95.24 97.50 96.30 96.08 97.83 95.79 95.83 96.83 97.12 98.15 95.12 96.81 96.15 98.26 98.67 92.68 99.41 98.08 100.00 100.00 98.41 97.44 97.92 96.77 90.57 96.55 94.64 100.00 98.41 97.85 96.30 98.78 97.73 K alternative_first_exon Rad23 chr4 + chr4_328916_330164 chr4_329706_330164 chr4_328723_328915 chr4_329039_329705 chr4_330165_330259 96.88 100.00 100.00 52.31 100.00 95.00 95.00 100.00 96.49 100.00 100.00 86.11 88.46 95.24 100.00 95.24 100.00 100.00 100.00 97.50 100.00 100.00 96.88 95.83 93.33 86.36 100.00 94.12 100.00 100.00 96.00 100.00 96.00 94.59 94.12 94.44 100.00 100.00 94.12 96.88 93.33 97.67 95.24 96.43 92.31 95.24 100.00 93.75 97.37 100.00 100.00 100.00 94.44 94.12 100.00 100.00 96.00 100.00 K alternative_first_exon lolal chr2R - chr2R_14043671_14043736,chr2R_14043671_14043740,chr2R_14043671_14043901,chr2R_14043671_14044074,chr2R_14043671_14044191,chr2R_14043671_14044461,chr2R_14043671_14045189,chr2R_14043671_14045264,chr2R_14043671_14045285;chr2R_14043671_14043772;chr2R_14043671_14045477,chr2R_14043671_14045446;chr2R_14043671_14045350 chr2R_14043671_14044260,chr2R_14043671_14044251 chr2R_14043773_14043823;chr2R_14045478_14045487;chr2R_14045351_14045444 chr2R_14044261_14044395 chr2R_14043397_14043670 9.52 15.00 10.00 8.77 4.55 10.34 13.51 6.35 12.12 9.52 14.29 7.27 3.03 20.00 13.64 13.56 12.12 10.34 12.82 11.11 7.14 10.00 5.88 11.11 NA 10.53 14.29 15.79 11.11 8.82 13.64 10.53 9.21 7.81 15.00 4.76 NA NA 21.43 7.02 5.71 8.97 10.53 4.76 6.52 4.17 5.56 3.95 8.24 4.55 16.67 NA 9.52 8.33 9.09 0.00 10.71 2.65 K alternative_first_exon RpL35 chrX + chrX_5566913_5567030;chrX_5566556_5567030 chrX_5566909_5567030 chrX_5566475_5566555 chrX_5566691_5566908 chrX_5567031_5567167 95.28 96.60 95.14 95.47 93.74 93.77 96.62 95.49 95.19 94.67 94.16 94.58 95.58 95.58 93.86 97.16 95.10 95.25 95.99 95.32 94.99 94.76 96.86 96.68 96.18 95.01 97.97 91.52 97.10 93.08 96.82 93.30 83.24 96.14 94.18 96.65 95.28 95.24 93.62 78.10 96.32 94.21 95.79 90.20 92.88 96.90 96.21 95.22 95.28 97.09 97.85 95.78 87.26 97.68 95.25 96.75 96.65 92.89 K alternative_first_exon Keap1 chr3R - chr3R_12902616_12905148;chr3R_12902616_12905594,chr3R_12902616_12905144 chr3R_12902616_12903539 chr3R_12905595_12905665 chr3R_12903540_12903820 chr3R_12902299_12902615 69.00 66.67 61.54 73.33 50.00 71.43 73.33 46.67 40.00 71.43 62.50 56.25 62.50 55.56 70.00 58.33 53.85 66.67 50.00 57.89 62.50 82.61 100.00 93.75 100.00 62.50 88.89 84.21 61.11 80.00 70.00 83.33 60.87 55.56 100.00 100.00 77.78 84.62 78.57 68.00 87.50 61.90 50.00 94.44 54.55 77.78 90.00 64.71 43.75 90.91 95.00 90.00 42.86 100.00 58.33 83.33 NA 27.27 K alternative_first_exon Imp chrX - chrX_10693027_10699298;chrX_10693027_10693783 chrX_10693027_10707281 chrX_10699299_10699502;chrX_10693784_10693957 chrX_10707282_10708126 chrX_10692652_10693026 21.88 22.22 19.23 24.60 21.21 21.54 25.00 23.08 22.97 20.93 15.07 21.80 18.60 27.06 20.00 24.16 23.46 20.29 25.00 16.77 17.19 21.74 21.84 24.39 22.50 17.33 15.87 22.45 21.74 19.64 23.40 20.00 26.67 23.87 27.03 20.37 12.82 16.67 14.63 24.29 25.00 21.88 23.94 22.39 26.67 27.59 22.73 24.29 21.38 25.00 23.08 25.00 20.83 21.43 20.21 27.27 15.62 17.65 K alternative_first_exon CG11337 chr3R - chr3R_27230327_27230992 chr3R_27230327_27230374 chr3R_27230993_27231174 chr3R_27230375_27230462 chr3R_27230134_27230326 1.64 0.00 2.86 9.38 0.00 2.38 1.35 1.75 2.74 5.56 4.35 0.00 3.12 4.88 0.00 2.53 3.57 0.00 5.71 1.64 0.00 5.00 0.00 3.03 0.00 3.03 0.00 0.00 0.00 0.00 2.04 0.00 0.00 5.66 0.00 0.00 0.00 4.17 0.00 1.27 0.00 1.64 3.12 6.06 0.00 4.76 6.25 0.00 1.45 7.69 2.50 0.00 6.25 16.67 2.04 0.00 0.00 0.00 K alternative_first_exon tacc chr3R - chr3R_563503_563786;chr3R_563503_565232;chr3R_563503_567573 chr3R_563503_565293 chr3R_565233_565269;chr3R_567574_569904 chr3R_565294_565365 chr3R_563195_563502 5.00 3.85 3.39 6.72 9.76 3.12 4.26 3.30 10.46 12.12 10.71 3.30 4.69 3.85 4.55 5.94 1.96 4.44 3.39 2.91 4.76 8.82 3.70 7.02 0.00 7.58 6.67 6.45 8.00 7.69 3.75 4.00 4.17 4.95 3.23 5.13 10.87 7.89 2.94 5.80 0.00 5.60 4.44 2.56 13.04 4.88 20.00 4.29 5.13 5.71 4.88 7.41 21.43 5.26 8.05 5.56 8.00 5.00 K alternative_first_exon CG17230 chr3R + chr3R_7266755_7289748;chr3R_7263822_7289748 chr3R_7289482_7289748 chr3R_7263507_7263821 chr3R_7289358_7289481 chr3R_7289749_7291360 0.00 0.00 0.00 0.00 6.25 0.00 0.00 5.00 0.00 7.69 0.00 4.35 7.69 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 3.45 0.00 3.03 0.00 8.33 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 6.25 0.00 0.00 0.00 K alternative_first_exon srpk79D chr3L + chr3L_22268539_22271922 chr3L_22271832_22271922 chr3L_22267109_22268538 chr3L_22270888_22271831 chr3L_22271923_22272144 50.00 NA NA NA NA NA NA NA 50.00 50.00 NA NA NA NA NA NA NA NA NA NA NA 25.00 0.00 50.00 50.00 NA NA 33.33 50.00 0.00 NA NA 50.00 NA NA NA 50.00 NA 50.00 50.00 NA NA NA 50.00 NA NA NA 0.00 NA NA 33.33 NA NA NA NA NA NA NA K alternative_first_exon CG2225 chr2L - chr2L_21673273_21677498 chr2L_21673273_21677054 chr2L_21677499_21677530 chr2L_21677055_21677230 chr2L_21672857_21673272 50.00 50.00 54.55 52.63 40.00 50.00 50.00 37.50 42.31 NA 50.00 42.11 28.57 50.00 57.14 45.83 26.67 54.55 43.75 46.43 NA 38.46 60.00 NA NA 66.67 NA NA NA 50.00 54.55 NA NA 46.67 50.00 NA 40.00 NA NA 53.85 NA 61.90 35.71 NA NA NA NA 61.54 44.83 NA 50.00 NA NA NA 50.00 NA NA NA K alternative_first_exon unc-104 chr2R - chr2R_12650846_12659762 chr2R_12650846_12651642 chr2R_12659763_12660002 chr2R_12651643_12651879 chr2R_12650703_12650845 0.00 0.00 0.00 6.25 0.00 0.00 5.88 4.76 3.85 0.00 NA 5.56 0.00 0.00 0.00 5.56 0.00 11.11 0.00 0.00 NA 0.00 11.11 0.00 0.00 0.00 0.00 NA 0.00 0.00 9.09 NA 0.00 0.00 0.00 10.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 NA 5.88 0.00 NA 0.00 NA NA NA 10.00 NA NA 0.00 K alternative_first_exon Dab chr3L + chr3L_16706035_16708540 chr3L_16707421_16708540 chr3L_16705226_16706034 chr3L_16706760_16707420 chr3L_16708541_16708611 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.25 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_first_exon Hsc70-4 chr3R + chr3R_11069864_11070081,chr3R_11068693_11070081,chr3R_11068450_11070081,chr3R_11068736_11070081,chr3R_11069819_11070081;chr3R_11069017_11070081;chr3R_11068522_11070081;chr3R_11068903_11070081,chr3R_11068907_11070081 chr3R_11070025_11070081 chr3R_11068920_11069016;chr3R_11068370_11068521;chr3R_11068878_11068902 chr3R_11069941_11070024 chr3R_11070082_11072336 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon shn chr2R + chr2R_7092334_7095749;chr2R_7077902_7095749 chr2R_7086507_7095749 chr2R_7077845_7077901 chr2R_7086376_7086506 chr2R_7095750_7097362 27.27 18.18 37.50 26.92 23.53 41.67 16.67 25.00 38.46 NA 25.00 29.63 25.00 29.41 25.00 14.81 46.67 20.00 28.57 24.24 NA 24.00 50.00 NA NA 33.33 28.57 36.36 NA NA 29.41 NA 4.17 24.24 23.08 29.41 17.65 NA NA 25.00 NA 27.27 30.00 23.08 NA NA NA 36.84 40.00 NA 28.57 NA NA NA 31.82 NA NA NA K alternative_first_exon CG4857 chrX + chrX_4014172_4014328,chrX_4013839_4014328;chrX_4013922_4014328;chrX_4013051_4014328;chrX_4014134_4014328 chrX_4013803_4014328 chrX_4013902_4013921;chrX_4012389_4013050;chrX_4014114_4014133 chrX_4013724_4013802 chrX_4014329_4014457 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 1.26 0.00 0.00 0.00 0.00 1.67 0.00 1.37 0.00 0.00 1.64 0.00 0.00 0.00 0.00 1.87 0.00 1.69 0.00 0.00 0.00 1.22 0.75 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 1.19 0.00 0.00 0.00 0.00 0.83 0.00 0.88 0.00 0.00 0.00 0.00 0.00 1.79 2.94 K alternative_first_exon dnc chrX + chrX_3208642_3215073;chrX_3189487_3215073;chrX_3140719_3215073 chrX_3175189_3215073 chrX_3189314_3189486;chrX_3140328_3140718 chrX_3173980_3175188 chrX_3215074_3215250 91.67 93.75 95.24 82.35 96.88 91.43 92.00 91.67 96.55 100.00 100.00 96.49 93.75 90.62 93.18 91.67 93.94 93.75 93.55 97.26 100.00 85.00 83.33 90.00 73.33 89.66 80.00 83.33 80.00 90.91 95.45 91.67 82.14 95.00 83.33 77.27 93.55 85.00 92.59 92.00 90.00 95.06 93.94 81.25 84.21 93.75 78.95 90.91 95.12 88.24 93.10 83.33 81.25 84.21 92.68 94.12 86.36 88.24 K alternative_first_exon CG32626 chrX - chrX_13729183_13731645 chrX_13729183_13729410 chrX_13731646_13731790 chrX_13729411_13730398 chrX_13728848_13729182 0.00 0.00 0.00 0.82 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.00 0.00 0.96 0.00 0.00 1.33 3.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon Gpo-1 chr2R - chr2R_11748259_11750201;chr2R_11748259_11750187;chr2R_11748259_11748565 chr2R_11748259_11749386,chr2R_11748259_11749143 chr2R_11750188_11750251;chr2R_11748566_11748849 chr2R_11749387_11749454 chr2R_11748106_11748258 14.29 24.00 12.50 14.81 33.33 5.88 11.54 9.09 12.77 10.00 13.33 9.43 10.00 9.52 19.05 6.67 14.29 0.00 13.64 8.16 6.25 14.63 14.00 17.39 12.82 0.00 18.75 22.58 16.13 25.00 14.71 15.15 22.22 15.38 12.90 25.64 13.33 8.33 18.37 14.29 20.00 15.38 6.67 20.69 14.89 18.18 20.00 19.23 9.80 26.32 11.90 11.11 6.25 22.58 13.04 13.79 21.05 19.05 K alternative_first_exon lig chr2R + chr2R_3955788_3957375,chr2R_3956442_3957375,chr2R_3956067_3957375;chr2R_3955517_3957375,chr2R_3955586_3957375,chr2R_3955872_3957375;chr2R_3957318_3957375 chr2R_3956340_3957375 chr2R_3955486_3955516;chr2R_3957252_3957317 chr2R_3956281_3956339 chr2R_3957376_3957784 5.21 14.81 2.04 2.90 6.00 2.22 2.33 5.00 4.72 18.75 2.04 4.88 0.00 5.41 3.03 6.98 2.08 4.26 2.22 3.41 5.00 32.43 NA NA NA 8.00 NA NA 10.53 0.00 3.39 11.76 10.20 2.60 15.79 NA 10.00 NA NA 6.98 16.67 3.67 4.65 7.14 5.00 7.69 NA 15.38 5.63 NA NA NA 8.33 NA 5.71 NA NA 14.29 K alternative_first_exon CG1358 chr2R - chr2R_3493750_3507837;chr2R_3493750_3501438;chr2R_3493750_3501965 chr2R_3493750_3495926 chr2R_3507838_3507944;chr2R_3501439_3501727;chr2R_3501966_3502040 chr2R_3495927_3495958 chr2R_3493449_3493749 69.23 80.77 61.54 80.77 64.29 73.91 86.49 69.44 73.47 25.00 90.48 69.05 71.43 74.29 74.29 66.67 70.83 62.50 70.37 73.08 80.00 75.00 69.44 70.00 61.54 68.75 69.23 57.14 64.29 68.18 58.06 72.22 75.00 63.04 57.89 62.50 70.59 75.00 60.87 51.72 65.22 54.29 84.85 63.64 76.00 71.43 63.64 78.12 68.75 68.18 61.76 79.17 43.75 46.15 66.67 70.59 57.89 70.97 K alternative_first_exon fd68A chr3L - chr3L_11111166_11112495;chr3L_11111166_11112264;chr3L_11111166_11111514;chr3L_11111166_11113381 chr3L_11111166_11113709 chr3L_11112265_11112519;chr3L_11111515_11111566;chr3L_11113382_11113511 chr3L_11113710_11113875 chr3L_11110405_11111165 89.66 94.12 92.86 88.00 84.21 90.00 89.36 85.25 89.09 90.00 94.12 90.91 91.43 90.00 93.75 89.06 91.67 86.36 91.89 88.71 83.33 85.71 92.31 95.24 85.71 84.00 91.67 81.82 88.89 86.67 84.85 78.57 78.57 92.45 100.00 88.00 86.36 100.00 91.30 89.66 90.00 88.00 91.18 84.62 85.71 85.00 85.19 88.89 92.06 91.30 96.55 83.33 91.67 81.25 90.91 95.00 95.00 95.00 K alternative_first_exon tlk chrX + chrX_3656891_3675687,chrX_3634238_3675687,chrX_3674212_3675687,chrX_3618905_3675687;chrX_3615681_3675687;chrX_3674723_3675687;chrX_3670471_3675687,chrX_3671394_3675687 chrX_3667068_3675687 chrX_3615409_3615680;chrX_3674176_3674722;chrX_3670092_3670470 chrX_3666673_3667067 chrX_3675688_3677592 14.29 14.81 12.50 9.52 19.05 14.29 21.43 18.03 14.10 14.29 7.69 14.29 19.35 21.43 22.58 14.04 14.81 18.52 16.22 15.38 10.00 16.67 10.87 11.43 12.00 20.69 6.67 22.22 10.34 7.89 20.00 33.33 5.71 13.56 15.62 10.00 7.69 14.29 6.06 13.33 12.50 15.62 12.00 17.14 16.67 9.09 20.00 5.66 16.67 23.53 14.29 9.68 11.11 25.00 16.22 12.50 23.08 8.70 K alternative_first_exon alph chr3R + chr3R_25417890_25422962 chr3R_25420067_25422962 chr3R_25417542_25417889 chr3R_25419949_25420066 chr3R_25422963_25423068 98.29 98.63 98.80 96.62 100.00 97.60 96.73 98.27 99.42 96.67 99.13 99.22 98.40 97.06 98.75 97.56 100.00 99.30 99.26 98.50 99.28 88.57 99.55 99.43 96.04 98.51 96.59 99.00 98.39 97.35 99.31 98.13 93.33 98.25 97.89 96.12 98.63 99.30 97.97 96.95 95.65 98.11 99.04 99.42 97.50 96.03 99.34 96.69 96.00 98.68 98.29 97.14 98.37 96.46 98.79 97.99 98.95 96.69 K alternative_first_exon Pfk chr2R + chr2R_5998053_6000121 chr2R_5999081_6000121 chr2R_5997737_5998052 chr2R_5998402_5999080 chr2R_6000122_6000463 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_first_exon arm chrX - chrX_1793073_1793389,chrX_1793073_1793734,chrX_1793073_1793794,chrX_1793073_1794406;chrX_1793073_1794542;chrX_1793073_1793431,chrX_1793073_1793413 chrX_1793073_1794076 chrX_1794543_1794673;chrX_1793432_1793643 chrX_1794077_1794222 chrX_1793013_1793072 59.22 57.14 56.83 63.08 53.12 60.48 64.20 63.75 59.09 51.47 62.07 57.71 67.23 65.31 56.88 61.59 56.67 57.58 60.36 56.39 55.91 65.44 59.35 55.56 62.50 63.83 61.33 70.42 51.49 60.00 55.68 46.05 50.00 58.62 51.61 65.85 63.64 62.12 57.47 68.42 47.73 59.68 61.60 65.52 47.37 46.83 60.23 45.58 59.22 53.16 60.82 60.53 59.65 51.92 58.13 61.05 55.07 46.88 K alternative_first_exon CG33523 chr3L + chr3L_5920177_5921323,chr3L_5919935_5921323;chr3L_5921008_5921323;chr3L_5920167_5921323 chr3L_5918725_5921323 chr3L_5920882_5921007;chr3L_5919971_5920166 chr3L_5918501_5918724 chr3L_5921324_5921396 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.92 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 1.47 0.00 2.38 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 1.64 K alternative_first_exon Eb1 chr2R + chr2R_2639219_2640136,chr2R_2637283_2640136;chr2R_2639737_2640136;chr2R_2637090_2640136 chr2R_2636895_2640136 chr2R_2639589_2639736;chr2R_2637037_2637089 chr2R_2636697_2636894 chr2R_2640137_2640289 90.38 85.90 92.20 91.91 91.40 88.72 88.08 93.09 87.83 90.38 91.67 92.83 90.67 85.98 87.66 88.79 89.90 88.60 88.41 93.39 87.21 85.39 93.92 91.15 91.67 92.24 92.64 84.62 94.51 95.15 86.70 97.01 97.94 87.27 90.38 96.58 85.50 78.18 93.38 95.49 95.06 89.12 85.85 89.64 96.20 95.76 85.14 95.63 89.53 82.64 94.16 81.25 92.17 95.37 88.95 83.64 82.97 95.70 K alternative_first_exon CG11791 chr3R + chr3R_20876091_20876902;chr3R_20875669_20876902 chr3R_20876340_20876902 chr3R_20875514_20875668 chr3R_20876063_20876339 chr3R_20876903_20877278 82.00 77.42 87.18 88.28 82.00 83.87 88.12 89.78 86.00 78.57 91.07 88.50 78.95 87.50 89.86 93.69 86.44 82.67 87.91 92.90 91.38 81.03 81.33 81.69 93.33 94.74 91.80 80.56 80.56 79.55 90.91 80.56 77.27 88.65 87.23 80.00 75.41 84.09 79.31 72.04 68.75 86.57 88.89 76.81 74.00 79.17 73.33 77.19 91.10 79.73 75.41 84.62 65.91 80.43 85.23 78.69 72.00 60.00 K alternative_first_exon capu chr2L - chr2L_3887800_3893261 chr2L_3887800_3888648 chr2L_3893262_3893604 chr2L_3888649_3888824 chr2L_3886984_3887799 11.11 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.29 NA NA NA 0.00 NA NA NA NA NA NA NA NA 33.33 11.11 NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon wun chr2R - chr2R_5291964_5300729 chr2R_5291964_5296717 chr2R_5300730_5300965 chr2R_5296718_5297158 chr2R_5291812_5291963 97.37 96.88 94.59 95.35 95.45 96.55 97.37 98.33 98.73 96.15 95.45 98.41 95.24 97.22 97.22 98.00 96.43 95.83 97.06 99.09 95.65 97.37 97.87 97.37 100.00 95.83 100.00 100.00 100.00 96.30 97.83 96.43 97.62 98.33 97.06 100.00 97.30 100.00 97.62 98.36 96.67 98.70 95.83 100.00 97.78 97.56 95.00 97.67 98.53 96.15 97.78 96.55 96.15 96.55 97.50 97.44 97.37 100.00 K alternative_first_exon gw chr4 - chr4_679135_680594,chr4_679135_680693,chr4_679135_681128,chr4_679135_682359;chr4_679135_679976;chr4_679135_681206,chr4_679135_681054 chr4_679135_680546,chr4_679135_680503,chr4_679135_680270,chr4_679135_680185 chr4_679977_680181;chr4_681207_681222 chr4_680547_680557 chr4_678528_679134 9.09 6.67 10.00 11.84 NA 20.00 6.78 10.13 15.49 NA 6.67 10.20 17.95 13.16 4.76 9.86 4.17 26.67 12.82 9.09 7.69 33.33 6.67 7.69 NA 8.00 13.33 NA NA 5.26 12.50 NA 7.14 14.06 5.00 4.35 NA NA NA 4.17 NA 13.46 5.00 5.56 NA NA NA 7.14 11.94 NA 4.00 15.38 NA NA 17.86 NA NA 0.00 K alternative_first_exon spri chrX - chrX_10386366_10390822 chrX_10386366_10386532 chrX_10390823_10391080 chrX_10386533_10387769 chrX_10385539_10386365 47.10 45.95 50.48 43.70 51.35 43.53 54.61 43.80 43.00 43.42 42.86 54.04 54.26 48.78 44.68 51.33 40.85 52.05 45.65 47.94 45.21 40.00 52.89 45.35 48.74 54.65 47.80 36.81 46.38 55.64 45.69 49.44 57.58 47.10 56.03 49.32 46.52 45.89 44.84 47.37 59.18 50.60 51.43 45.70 46.02 47.83 48.06 59.70 47.13 42.93 47.43 49.00 36.62 46.55 42.98 42.40 27.66 39.56 K alternative_first_exon CG42748 chr2L + chr2L_22146997_22154797 chr2L_22153707_22154797 chr2L_22145671_22146996 chr2L_22153575_22153706 chr2L_22154798_22155408 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.00 0.00 0.25 0.00 0.00 0.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.87 0.00 0.00 0.00 0.00 K alternative_first_exon CG14619 chrX + chrX_21858875_21859262,chrX_21857858_21859262,chrX_21857923_21859262,chrX_21858374_21859262,chrX_21858580_21859262;chrX_21857700_21859262;chrX_21858396_21859262 chrX_21859028_21859262 chrX_21857639_21857699;chrX_21858282_21858395 chrX_21858727_21859027 chrX_21859263_21859387 6.06 NA 5.56 7.14 9.09 0.00 3.12 6.06 5.88 NA 0.00 3.03 0.00 7.14 5.26 7.69 5.88 0.00 0.00 6.90 0.00 NA 14.29 9.09 NA 9.09 12.50 NA NA NA 5.26 NA 4.35 6.25 NA 8.33 NA NA NA 11.76 NA 7.69 6.25 8.33 NA NA NA 14.29 4.65 NA NA NA NA NA 5.88 NA NA NA K alternative_first_exon CG1910 chr3R + chr3R_27574775_27574928;chr3R_27573809_27574928 chr3R_27574408_27574928 chr3R_27573367_27573808 chr3R_27574307_27574407 chr3R_27574929_27575243 0.81 1.57 1.63 0.00 1.09 0.87 0.72 0.00 1.01 1.72 0.00 0.45 0.00 0.00 0.70 0.51 0.00 0.00 0.00 1.06 1.03 1.96 1.54 1.81 1.11 0.80 0.71 1.08 0.00 0.60 0.00 0.82 1.00 0.48 2.07 0.75 0.61 0.86 1.37 2.25 0.00 0.39 0.00 1.46 1.39 0.59 0.91 0.28 1.13 0.75 1.28 0.88 0.81 2.30 0.00 0.81 0.00 1.11 K alternative_first_exon CR42549,mura chr3R - chr3R_5375533_5377422;chr3R_5375533_5377487 chr3R_5375533_5377037 chr3R_5377423_5377470;chr3R_5377488_5377528 chr3R_5377038_5377079 chr3R_5375500_5375532 6.51 NA NA 8.33 NA NA 5.88 0.00 0.00 NA NA 0.00 7.14 NA NA NA NA NA NA NA NA 12.00 7.14 8.33 NA NA NA NA NA NA NA NA NA 7.14 NA NA 0.00 NA 7.69 0.00 NA 14.29 NA 0.00 NA NA NA NA 5.88 0.00 NA 16.67 NA NA 0.00 7.69 NA NA K alternative_first_exon CG8790 chr3R + chr3R_9192999_9193460;chr3R_9190952_9193460 chr3R_9193391_9193460 chr3R_9190661_9190951 chr3R_9193260_9193390 chr3R_9193461_9193883 1.39 1.19 1.08 1.53 0.00 1.37 0.81 1.50 1.72 5.00 3.12 2.94 1.75 1.09 0.00 0.86 1.52 0.00 1.01 0.49 5.88 3.75 0.86 2.40 1.32 1.25 1.19 6.35 1.72 1.30 1.67 3.39 1.59 1.46 1.16 3.90 2.70 2.00 1.19 1.67 0.00 1.86 1.35 1.39 1.19 1.52 0.00 1.11 0.65 2.33 1.56 1.41 0.00 1.39 0.00 1.47 1.04 3.49 K alternative_first_exon CG4673 chr3R - chr3R_21449128_21450310 chr3R_21449128_21449199 chr3R_21450311_21450382 chr3R_21449200_21449467 chr3R_21448894_21449127 9.38 6.67 5.00 2.44 6.67 5.88 9.38 5.41 5.45 11.11 5.26 34.21 18.75 4.00 9.52 6.06 8.33 11.11 20.00 9.09 5.56 47.06 13.33 15.38 NA 21.74 13.33 25.00 20.00 11.11 7.41 11.11 16.67 6.06 NA NA 5.56 11.11 17.65 13.33 NA 11.11 6.67 16.67 9.09 27.27 9.09 0.00 6.90 22.22 22.22 16.67 NA NA 3.85 9.09 8.33 0.00 K alternative_first_exon Actn chrX - chrX_1929235_1936079 chrX_1929235_1930439 chrX_1936080_1936344 chrX_1930440_1930500 chrX_1928988_1929234 13.64 10.81 15.15 15.00 15.38 4.76 18.18 6.90 7.69 28.89 15.00 11.48 6.25 4.35 14.29 4.65 18.18 21.05 13.64 12.64 10.71 26.79 12.33 21.05 20.59 20.00 15.38 29.17 21.15 8.20 18.42 7.89 7.96 6.82 8.33 16.28 33.65 24.44 12.50 9.68 13.95 11.11 10.53 14.29 18.00 9.84 19.57 12.61 13.33 24.32 12.50 17.95 8.89 6.67 10.00 18.37 23.08 7.45 N alternative_first_exon Hr78 chr3L - chr3L_21488969_21490390 chr3L_21488969_21489526,chr3L_21488969_21489520 chr3L_21490391_21490585 chr3L_21489527_21489841 chr3L_21488699_21488968 97.83 100.00 100.00 97.56 100.00 96.77 97.14 97.30 98.11 95.83 100.00 98.08 100.00 95.83 96.97 95.83 95.45 100.00 95.45 98.39 100.00 83.33 100.00 100.00 96.43 100.00 100.00 96.55 97.62 100.00 96.43 96.55 100.00 97.56 96.88 97.06 100.00 97.37 100.00 98.44 96.97 98.18 95.45 97.30 97.83 97.56 100.00 98.33 98.08 100.00 97.92 95.45 100.00 100.00 100.00 96.97 97.30 97.73 K alternative_first_exon apt chr2R + chr2R_19484322_19484414,chr2R_19453742_19484414;chr2R_19468992_19484414;chr2R_19455916_19484414;chr2R_19452574_19484414 chr2R_19471499_19484414 chr2R_19468615_19468991;chr2R_19455581_19455915;chr2R_19452420_19452573 chr2R_19471332_19471498 chr2R_19484415_19484520 5.26 8.82 7.69 7.41 11.54 9.38 7.14 6.25 10.10 7.14 10.71 10.39 12.82 14.00 15.69 9.88 7.32 10.00 9.84 9.86 7.41 0.00 2.70 3.70 5.26 9.52 3.03 0.00 0.00 0.00 7.14 0.00 2.94 10.71 4.17 4.76 0.00 6.67 5.26 0.00 0.00 5.56 13.04 3.45 0.00 0.00 0.00 0.00 6.52 0.00 4.65 3.85 0.00 0.00 7.02 0.00 0.00 0.00 K alternative_first_exon CG3305 chr2L + chr2L_21574633_21574786,chr2L_21555034_21574786;chr2L_21573425_21574786,chr2L_21573562_21574786 chr2L_21573959_21574786 chr2L_21573393_21573424 chr2L_21573752_21573958 chr2L_21574787_21575113 1.60 0.79 2.34 1.15 2.08 1.67 2.18 1.56 1.75 1.37 2.16 1.58 1.60 2.01 2.17 1.62 1.84 2.25 1.65 2.01 1.81 3.48 0.74 1.49 0.50 2.40 0.88 2.27 2.38 0.79 1.95 1.05 1.27 3.02 0.75 1.10 1.24 0.00 0.47 2.69 2.27 2.32 1.76 0.36 2.90 0.87 0.92 5.36 2.07 0.48 0.67 1.32 0.54 0.37 1.29 0.37 0.66 3.96 K alternative_first_exon sd chrX + chrX_15706305_15707881;chrX_15706472_15707881,chrX_15706564_15707881 chrX_15707640_15707881 chrX_15706362_15706471 chrX_15707585_15707639 chrX_15707882_15708328 0.00 NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon Atf6 chr2R + chr2R_1032364_1040293 chr2R_1036662_1040293 chr2R_1032202_1032363 chr2R_1034671_1036661 chr2R_1040294_1041693 100.00 93.33 87.50 83.87 100.00 100.00 97.37 97.37 97.50 100.00 88.89 96.43 100.00 94.74 100.00 95.35 92.86 90.91 100.00 100.00 100.00 100.00 92.86 100.00 80.00 92.31 93.75 100.00 100.00 100.00 93.33 100.00 90.91 97.30 100.00 78.57 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 80.00 90.91 100.00 100.00 97.37 100.00 100.00 100.00 100.00 100.00 93.75 100.00 90.91 92.86 K alternative_first_exon Picot chr2R - chr2R_12544945_12551019 chr2R_12544945_12546251 chr2R_12551020_12551709 chr2R_12546252_12546658 chr2R_12544769_12544944 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA NA 100.00 100.00 100.00 100.00 K alternative_first_exon btsz chr3R - chr3R_10634534_10649584;chr3R_10634534_10639970 chr3R_10634534_10634988 chr3R_10649585_10649708;chr3R_10639971_10646665 chr3R_10634989_10636008 chr3R_10634349_10634533 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA N alternative_first_exon CG42245,MEP-1 chr3L + chr3L_2632974_2633537,chr3L_2632253_2633537;chr3L_2631917_2633537,chr3L_2632122_2633537 chr3L_2632467_2633537 chr3L_2631720_2631916 chr3L_2632277_2632466 chr3L_2633538_2633809 37.93 41.18 26.32 34.55 34.62 24.00 40.00 39.13 33.66 32.00 19.35 38.60 31.25 38.89 30.56 32.73 40.74 30.30 33.33 25.56 28.00 55.56 55.56 46.34 66.67 36.36 56.25 46.15 38.24 51.16 39.13 37.50 37.21 40.35 48.28 45.45 37.93 37.93 46.43 38.81 29.17 33.90 35.48 44.23 34.62 31.25 41.94 25.00 29.51 40.00 47.92 55.17 23.81 38.10 31.11 44.83 30.43 23.68 K alternative_first_exon CG7536 chrX - chrX_17976413_17976512,chrX_17976413_17979226;chrX_17976413_17982398 chrX_17976413_17979230 chrX_17982399_17982565 chrX_17979231_17979495 chrX_17976252_17976412 56.25 61.22 63.27 54.69 50.00 52.38 56.67 45.45 47.24 52.38 54.35 53.95 69.23 44.90 73.33 62.26 62.86 61.76 61.22 61.05 48.98 62.30 50.63 55.93 54.55 60.42 50.72 42.11 56.25 50.00 64.71 62.07 51.49 57.14 46.94 55.77 50.00 56.86 55.71 73.47 60.47 56.86 62.86 67.44 55.88 60.94 48.78 68.69 56.04 52.63 54.84 62.16 71.88 43.75 57.14 48.72 66.67 80.49 K alternative_first_exon CG11537 chr3L - chr3L_3133339_3133648;chr3L_3133339_3142827;chr3L_3133339_3139750 chr3L_3133339_3133948 chr3L_3142828_3143454;chr3L_3139751_3139956 chr3L_3133949_3134180 chr3L_3132633_3133338 20.00 NA 50.00 14.29 NA NA 33.33 NA 22.22 16.67 NA 20.00 NA 20.00 0.00 NA 25.00 NA 20.00 NA 0.00 14.29 11.11 14.29 20.00 14.29 NA 0.00 20.00 25.00 14.29 NA 14.29 20.00 16.67 50.00 NA NA NA NA 16.67 20.00 NA 20.00 16.67 50.00 0.00 50.00 33.33 NA 25.00 NA NA NA 50.00 0.00 NA 25.00 K alternative_first_exon CG31729 chr2L + chr2L_13291292_13297618 chr2L_13296746_13297618 chr2L_13290006_13291291 chr2L_13296349_13296745 chr2L_13297619_13298456 72.73 73.44 78.48 81.25 77.78 79.17 79.17 81.20 77.42 65.67 78.33 75.18 80.88 77.63 77.65 79.65 77.27 75.86 82.35 77.85 79.66 71.43 66.33 72.46 72.55 83.75 68.49 61.02 64.71 62.67 78.75 68.75 63.83 75.38 71.67 72.73 63.16 69.70 64.06 71.05 71.43 75.35 78.26 64.86 60.61 63.04 72.09 61.46 75.00 70.97 71.74 76.67 50.00 69.57 80.61 77.14 62.86 51.67 K alternative_first_exon spi chr2L - chr2L_19569227_19572142,chr2L_19569227_19577173;chr2L_19569227_19577185;chr2L_19569227_19572499 chr2L_19569227_19571571 chr2L_19577186_19577324;chr2L_19572500_19572610 chr2L_19571572_19572181 chr2L_19567899_19569226 74.53 80.37 80.58 47.94 67.65 75.00 67.57 68.85 70.20 56.00 74.65 62.91 73.95 72.12 69.37 71.05 73.58 78.87 76.06 77.38 84.15 66.27 81.82 84.17 68.67 75.37 79.39 47.83 47.92 84.71 70.34 72.83 84.07 72.50 87.04 75.27 78.46 87.69 82.56 63.29 78.95 73.18 74.53 72.63 76.70 84.08 70.00 73.50 67.30 75.00 82.22 72.16 63.16 79.49 72.90 82.29 79.63 77.46 K alternative_first_exon CG31064 chr3R - chr3R_23059404_23064246 chr3R_23059404_23062584 chr3R_23064247_23064803 chr3R_23062585_23063568 chr3R_23058970_23059403 13.04 9.80 12.50 40.00 16.00 15.38 25.00 16.22 15.28 16.13 13.64 15.15 20.00 13.04 14.71 22.22 12.50 18.52 12.50 13.51 19.23 37.25 12.66 11.94 21.74 19.35 12.50 18.42 12.50 19.44 17.24 12.00 15.00 13.04 12.82 30.00 12.35 12.73 9.72 12.16 22.73 11.54 13.04 11.11 13.16 10.00 8.70 17.95 10.00 9.76 11.94 8.82 7.89 8.82 11.43 4.76 5.00 10.53 K alternative_first_exon alt chr3R - chr3R_13503901_13504925,chr3R_13503901_13505368;chr3R_13503901_13507816;chr3R_13503901_13504865;chr3R_13503901_13504373 chr3R_13503901_13508180,chr3R_13503901_13508178,chr3R_13503901_13508123 chr3R_13507817_13507965;chr3R_13504866_13505009;chr3R_13504374_13504425 chr3R_13508181_13508234 chr3R_13502559_13503900 58.71 61.54 71.43 67.42 72.92 70.37 61.64 58.13 61.29 58.33 50.00 66.35 60.42 56.52 69.57 50.45 61.82 72.73 56.94 68.12 52.94 52.63 55.17 61.90 55.00 72.00 53.85 44.00 29.41 47.83 57.29 50.00 54.55 61.95 31.25 33.33 70.00 72.22 59.09 59.38 42.86 71.57 65.52 52.63 76.47 40.00 50.00 35.29 60.51 60.00 40.74 60.00 50.00 NA 69.57 69.23 48.57 33.33 K alternative_first_exon mrj chr2R - chr2R_12093585_12108627;chr2R_12093585_12097072;chr2R_12093585_12097694;chr2R_12093585_12109174 chr2R_12093585_12093676 chr2R_12097073_12097348;chr2R_12097695_12097904;chr2R_12109175_12109301 chr2R_12093677_12093767 chr2R_12093406_12093584 9.26 7.89 5.41 19.28 11.43 8.33 8.89 9.09 8.65 11.11 13.51 10.11 15.22 10.34 6.56 5.43 11.48 9.30 12.33 12.50 6.98 9.09 9.26 12.24 5.71 13.04 8.16 14.29 10.00 10.71 5.80 0.00 23.53 7.37 12.82 13.79 12.50 0.00 0.00 7.14 22.22 6.84 14.58 13.04 5.56 7.14 13.33 11.11 7.78 5.88 8.00 8.82 11.11 3.85 10.00 3.03 19.44 6.67 K alternative_first_exon Vrp1 chr2R - chr2R_18000094_18009397;chr2R_18000094_18003669,chr2R_18000094_18003655 chr2R_18000094_18000186 chr2R_18009398_18010042;chr2R_18003670_18003843 chr2R_18000187_18000294 chr2R_17999715_18000093 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 1.61 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 0.00 1.89 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 N alternative_first_exon CG32280 chr3L + chr3L_3167902_3167941,chr3L_3165352_3167941,chr3L_3165407_3167941,chr3L_3165390_3167941;chr3L_3165222_3167941;chr3L_3165255_3167941 chr3L_3165704_3167941 chr3L_3165182_3165221;chr3L_3165230_3165254 chr3L_3165334_3165703 chr3L_3167942_3168265 42.86 NA NA NA NA NA NA NA 42.86 57.14 NA 60.00 NA NA NA 57.14 NA NA NA 50.00 NA 44.44 22.22 NA NA NA NA NA 42.86 NA NA NA NA 50.00 NA NA 10.00 NA NA 24.00 NA NA NA NA 37.50 44.44 37.50 16.67 NA 27.27 37.50 NA NA NA NA NA 20.00 42.86 K alternative_first_exon Kap3 chrX - chrX_11232823_11233770 chrX_11232823_11233246 chrX_11233771_11234117 chrX_11233247_11233588 chrX_11232705_11232822 85.00 81.82 76.92 82.35 91.67 91.67 85.00 85.00 79.17 90.91 81.82 80.95 81.82 83.33 84.62 76.47 90.00 70.00 85.71 88.46 80.00 91.67 86.36 86.67 90.91 85.71 85.71 93.33 88.24 85.71 82.35 90.91 85.00 84.21 92.31 93.75 70.00 81.82 88.24 87.50 77.78 82.14 83.33 84.62 81.82 87.50 88.89 89.29 87.10 81.82 88.89 86.67 87.50 83.33 82.35 80.00 77.78 85.71 K alternative_first_exon Eip71CD chr3L + chr3L_15505185_15505271,chr3L_15505183_15505271;chr3L_15504270_15505271 chr3L_15504733_15505271 chr3L_15504153_15504269 chr3L_15504666_15504732 chr3L_15505272_15505453 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon CG2003 chr3R + chr3R_27812832_27814973,chr3R_27812907_27814973;chr3R_27804037_27814973 chr3R_27812850_27814973 chr3R_27803852_27804036 chr3R_27812574_27812849 chr3R_27814974_27815051 89.19 86.21 78.79 90.00 93.75 86.21 90.38 85.25 92.55 100.00 91.67 85.96 92.00 80.49 82.86 85.07 90.62 87.88 89.19 83.33 78.26 91.67 95.83 95.00 78.57 88.00 90.48 81.82 72.73 89.47 91.23 90.00 75.76 84.62 92.00 88.89 93.75 100.00 92.31 88.24 72.73 89.39 79.31 88.00 93.75 87.88 91.30 83.33 87.34 85.71 92.59 93.75 94.44 86.67 82.50 94.74 91.43 92.50 K alternative_first_exon bves chrX + chrX_20925350_20931518 chrX_20925770_20931518 chrX_20925034_20925349 chrX_20925578_20925769 chrX_20931519_20932584 88.89 88.89 100.00 88.89 87.50 100.00 80.00 88.24 86.96 83.33 71.43 88.24 75.00 92.31 90.00 94.12 87.50 100.00 60.00 88.24 NA 87.50 88.89 77.78 100.00 85.71 87.50 NA NA 88.89 90.00 NA 92.86 84.62 93.33 90.91 88.89 NA 87.50 76.92 88.89 85.71 90.00 94.44 NA 90.91 88.89 85.71 82.35 NA 92.86 100.00 85.71 100.00 90.91 87.50 NA 85.71 K alternative_first_exon tmod chr3R + chr3R_26389204_26397530;chr3R_26359230_26397530 chr3R_26397152_26397530 chr3R_26388894_26389203;chr3R_26358605_26359229 chr3R_26396879_26397151 chr3R_26397531_26397683 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 1.69 4.35 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 10.00 0.00 2.94 0.00 0.00 3.12 13.33 10.00 0.00 0.00 0.00 4.76 0.00 0.00 0.00 2.86 0.00 3.85 2.13 0.00 2.22 0.00 3.45 0.00 0.00 0.00 10.00 0.00 2.44 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 K alternative_first_exon btsz chr3R - chr3R_10634534_10639970;chr3R_10634534_10634988 chr3R_10634534_10649584 chr3R_10639971_10646665;chr3R_10634989_10636008 chr3R_10649585_10649708 chr3R_10634349_10634533 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA 0.00 NA NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA K alternative_first_exon RhoGEF3 chr3L + chr3L_300301_300894;chr3L_299017_300894 chr3L_300774_300894 chr3L_298959_299016 chr3L_300570_300773 chr3L_300895_301104 0.00 2.50 2.17 2.00 0.00 0.00 0.00 0.00 1.01 0.00 3.70 1.52 4.00 0.00 0.00 2.33 0.00 0.00 3.70 1.98 0.00 2.08 1.54 2.33 0.00 0.00 2.13 0.00 0.00 0.00 0.00 0.00 1.59 3.17 0.00 2.17 0.00 0.00 1.64 1.96 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 1.30 0.00 1.69 0.00 0.00 0.00 0.00 0.00 3.70 0.00 K alternative_first_exon CG11347 chr3L + chr3L_4414458_4417819;chr3L_4414859_4417819 chr3L_4407385_4417819 chr3L_4414360_4414457;chr3L_4414667_4414858 chr3L_4407145_4407384 chr3L_4417820_4418494 0.00 NA 0.00 5.26 NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 11.11 4.76 14.29 NA 0.00 4.17 NA 5.00 0.00 0.00 0.00 NA NA 11.11 0.00 12.50 0.00 NA 14.29 0.00 0.00 0.00 12.50 NA NA 7.69 NA 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 6.25 NA NA NA 10.00 NA NA 14.29 K alternative_first_exon CG1640 chrX + chrX_13267830_13267895;chrX_13264836_13267895 chrX_13265094_13267895,chrX_13265401_13267895,chrX_13265295_13267895,chrX_13265560_13267895,chrX_13265248_13267895 chrX_13264639_13264835 chrX_13265065_13265093 chrX_13267896_13268136 97.37 96.97 92.86 90.00 97.14 96.43 97.06 97.78 97.14 100.00 96.43 90.20 94.44 94.74 94.12 100.00 92.86 95.24 96.97 96.49 100.00 97.56 97.87 94.29 90.48 96.15 100.00 100.00 97.37 100.00 92.31 100.00 98.18 97.67 100.00 100.00 98.08 100.00 97.83 96.72 95.83 98.04 100.00 96.67 96.30 97.62 100.00 100.00 94.74 100.00 100.00 96.30 100.00 100.00 97.14 100.00 95.65 100.00 K alternative_first_exon Amun chrX - chrX_11607842_11608272;chrX_11607842_11608590,chrX_11607842_11608507 chrX_11607842_11608054 chrX_11608591_11608934 chrX_11608055_11608246 chrX_11607788_11607841 10.94 11.54 10.53 8.82 11.11 10.00 10.34 9.30 10.94 14.29 13.64 10.26 12.50 10.53 18.75 5.56 10.00 10.00 15.00 12.50 9.52 20.00 12.50 10.53 5.56 6.25 10.00 41.67 17.24 12.90 0.00 16.00 16.67 12.50 15.00 10.53 12.50 12.50 7.41 18.18 25.00 10.00 8.70 6.90 6.90 11.54 10.00 11.86 8.89 5.56 9.52 12.50 13.04 11.76 2.78 19.05 12.50 8.93 K alternative_first_exon CG33523 chr3L + chr3L_5920177_5921323,chr3L_5919935_5921323;chr3L_5921008_5921323;chr3L_5918725_5921323 chr3L_5920167_5921323 chr3L_5920882_5921007;chr3L_5918501_5918724 chr3L_5919971_5920166 chr3L_5921324_5921396 82.86 88.68 83.05 83.33 79.07 80.43 84.44 87.60 85.19 83.33 82.86 86.24 81.63 85.48 90.57 86.41 91.67 79.59 85.00 80.91 84.09 50.00 82.35 85.25 78.57 78.43 82.14 67.86 40.62 69.77 85.59 73.33 52.27 85.95 79.17 75.68 85.96 89.80 76.47 77.78 59.26 86.24 85.19 84.38 61.11 82.61 83.87 64.71 86.13 75.81 88.41 79.63 78.79 82.05 86.49 88.89 87.32 60.66 K alternative_first_exon CG42321 chr2R - chr2R_9310231_9323707;chr2R_9310231_9313017;chr2R_9310231_9311418 chr2R_9310231_9326111 chr2R_9313018_9313744;chr2R_9311419_9312241 chr2R_9326112_9326550 chr2R_9310107_9310230 66.67 75.00 50.00 80.00 57.14 60.00 68.75 70.59 65.38 50.00 57.14 66.67 71.43 70.00 66.67 84.62 55.56 62.50 69.23 64.71 71.43 16.67 66.67 77.78 75.00 50.00 72.73 60.00 62.50 62.50 61.54 66.67 66.67 61.11 42.86 66.67 63.64 87.50 60.00 58.33 33.33 68.18 70.00 85.71 33.33 60.00 66.67 71.43 66.67 66.67 71.43 75.00 80.00 75.00 55.56 80.00 75.00 60.00 K alternative_first_exon granny-smith chr3R - chr3R_8786040_8792881 chr3R_8786040_8787164 chr3R_8792882_8793100 chr3R_8787165_8787357 chr3R_8785015_8786039 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.36 100.00 100.00 100.00 100.00 100.00 99.32 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 98.77 100.00 100.00 100.00 100.00 100.00 100.00 99.17 100.00 98.86 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.36 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_first_exon larp chr3R - chr3R_24151542_24156502;chr3R_24151542_24153880;chr3R_24151542_24151775 chr3R_24151542_24159430 chr3R_24153881_24154005;chr3R_24151776_24151963 chr3R_24159431_24160429 chr3R_24151211_24151541 93.68 93.68 93.62 90.59 92.80 88.89 85.80 86.34 92.97 97.27 89.57 93.19 82.83 83.64 90.51 78.52 90.98 93.80 87.07 92.59 92.13 95.37 95.82 95.41 94.97 87.39 93.58 96.79 95.12 95.87 54.84 96.97 97.07 90.24 95.10 95.77 97.12 96.27 97.13 94.22 96.32 93.67 90.08 92.76 97.94 95.53 94.21 97.76 91.19 93.10 93.17 94.24 98.40 95.38 90.00 95.10 95.36 97.79 K alternative_first_exon pico chrX - chrX_19730788_19743974;chrX_19730788_19744895 chrX_19730788_19742099 chrX_19743975_19744083;chrX_19744896_19746084 chrX_19742100_19742536 chrX_19729677_19730787 9.23 11.36 11.88 10.07 10.77 13.48 10.71 12.50 11.16 5.43 9.23 13.02 14.47 18.09 14.29 12.77 11.11 17.28 13.83 14.80 12.86 6.38 7.74 5.45 5.49 12.79 6.09 5.49 5.98 4.23 20.00 4.35 3.81 12.12 8.49 6.78 5.66 8.26 4.44 8.11 7.81 10.84 14.67 8.33 7.84 10.39 5.77 9.13 13.07 5.88 8.89 7.78 9.59 7.89 14.91 10.64 9.09 5.36 K alternative_first_exon Pax chr2L - chr2L_19410644_19410844;chr2L_19410644_19411536;chr2L_19410644_19419868 chr2L_19410644_19426205 chr2L_19411537_19411719;chr2L_19419869_19420191 chr2L_19426206_19426424 chr2L_19410480_19410643 82.74 81.82 82.98 87.25 85.25 87.59 82.74 85.66 83.44 84.95 79.73 83.94 86.46 86.81 86.59 80.47 84.09 83.94 85.80 82.77 83.70 81.19 74.75 81.87 81.74 87.76 79.87 68.27 79.05 76.87 89.09 82.98 79.11 85.49 72.41 75.68 77.98 78.83 74.47 79.83 78.89 85.53 84.67 74.12 77.00 76.97 81.30 81.03 88.04 75.53 82.38 84.55 88.89 76.25 84.78 78.26 88.76 91.89 N alternative_first_exon CG10320 chr2R + chr2R_17545799_17545850,chr2R_17545690_17545850,chr2R_17545686_17545850,chr2R_17545767_17545850;chr2R_17545615_17545850 chr2R_17545781_17545850 chr2R_17545580_17545614 chr2R_17545628_17545780 chr2R_17545851_17545985 38.98 37.21 19.05 23.21 15.69 16.98 38.98 20.63 24.76 71.43 25.64 27.14 10.53 26.32 18.46 27.78 16.28 29.27 17.78 20.45 28.21 50.00 59.09 58.33 80.00 25.53 52.00 55.56 53.19 52.17 22.92 45.16 50.00 23.08 50.00 40.91 48.78 43.33 50.00 60.00 56.52 17.54 17.50 56.25 30.65 61.54 54.55 75.00 17.14 60.00 51.52 68.42 30.30 84.21 22.22 51.28 38.78 59.46 K alternative_first_exon CG6656 chr3R + chr3R_17701353_17702296 chr3R_17702199_17702296 chr3R_17701015_17701352 chr3R_17702070_17702198 chr3R_17702297_17702410 98.33 96.15 95.45 81.25 100.00 100.00 100.00 100.00 98.84 95.00 93.33 97.78 100.00 95.24 96.77 94.44 100.00 100.00 100.00 97.87 100.00 97.78 98.33 98.18 93.75 77.78 100.00 96.00 92.31 92.59 100.00 100.00 100.00 97.50 96.15 100.00 98.61 90.91 100.00 97.50 100.00 100.00 88.89 100.00 96.55 97.83 97.92 100.00 100.00 97.30 98.44 100.00 100.00 97.14 100.00 100.00 98.68 96.15 K alternative_first_exon alpha-Man-I chrX - chrX_10173225_10217598 chrX_10173225_10180481 chrX_10217599_10218574 chrX_10180482_10181138 chrX_10172612_10173224 5.56 6.06 10.00 5.56 5.26 3.70 7.41 4.88 7.14 7.69 0.00 3.64 11.11 4.17 3.85 6.06 8.70 3.85 11.11 6.00 5.26 8.11 4.76 5.56 4.00 8.70 5.71 0.00 3.85 3.23 7.69 7.14 5.00 5.41 10.53 6.25 2.17 2.86 2.38 4.17 0.00 3.51 5.56 9.68 10.53 5.00 4.55 9.09 7.55 5.88 3.12 7.69 4.55 0.00 6.67 4.55 9.52 10.00 K alternative_first_exon CG31522 chr3R - chr3R_273677_273730,chr3R_273677_273734,chr3R_273677_273755;chr3R_273677_278913 chr3R_273677_276193 chr3R_278914_279036 chr3R_276194_276540 chr3R_273423_273676 14.29 21.05 12.50 10.26 13.33 11.11 14.81 9.52 12.28 44.44 10.00 15.79 23.08 11.11 14.29 5.88 14.29 20.69 10.53 11.54 13.33 32.26 14.71 17.39 27.27 13.04 29.41 27.27 12.50 22.22 10.00 20.00 15.00 14.29 13.33 25.00 30.00 23.53 14.29 21.28 7.14 16.36 10.00 16.67 13.33 13.64 11.76 20.69 10.26 21.43 16.00 6.67 16.67 12.50 9.09 6.25 8.33 7.41 K alternative_first_exon Eip75B chr3L - chr3L_17952721_17962462 chr3L_17952721_17954104 chr3L_17962463_17962607 chr3L_17954105_17954914 chr3L_17952482_17952720 77.55 75.00 80.77 75.31 64.10 68.00 86.81 83.81 76.12 62.86 80.00 80.39 78.21 77.42 70.37 88.66 82.61 77.36 80.00 80.17 80.56 59.70 74.42 71.93 77.78 74.14 79.10 64.62 70.83 72.00 77.55 77.78 75.41 82.18 79.59 81.54 70.00 68.75 69.70 72.29 82.35 78.43 79.63 75.00 80.65 81.40 77.50 74.60 84.82 57.45 79.35 79.55 81.48 76.67 74.19 71.79 88.89 86.49 K alternative_first_exon stmA chr2R - chr2R_4620386_4621296 chr2R_4620386_4620806 chr2R_4621297_4621809 chr2R_4620807_4620996 chr2R_4620181_4620385 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_first_exon sta chrX - chrX_1376514_1377290 chrX_1376514_1376705 chrX_1377291_1377446 chrX_1376706_1377053 chrX_1375830_1376513 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 99.96 99.92 100.00 100.00 100.00 100.00 100.00 100.00 99.94 100.00 100.00 100.00 99.96 99.95 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 N alternative_first_exon Not1 chr2R - chr2R_5463890_5465342;chr2R_5463890_5465689 chr2R_5463890_5465194 chr2R_5465690_5465985 chr2R_5465195_5465480 chr2R_5463683_5463889 18.12 20.00 14.06 15.05 15.24 17.65 18.18 13.86 13.65 20.55 18.26 17.71 15.87 18.12 17.50 18.95 16.56 14.29 20.86 15.47 17.71 12.94 22.45 27.27 24.74 20.81 27.54 25.00 16.83 13.67 16.05 16.67 11.34 15.96 23.58 23.14 15.56 24.66 23.15 19.34 7.50 18.69 18.18 21.01 9.09 16.33 22.73 13.61 17.03 23.08 22.60 26.97 16.67 23.53 21.31 18.42 22.73 11.11 K alternative_first_exon tacc chr3R - chr3R_563461_567573;chr3R_563461_565293 chr3R_563461_565232 chr3R_567574_569904;chr3R_565294_565365 chr3R_565233_565269 chr3R_563195_563460 3.33 4.76 3.70 0.00 12.50 6.67 7.25 3.77 4.48 0.00 12.90 3.92 7.14 4.76 8.33 6.45 4.17 4.76 6.25 5.26 0.00 5.56 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 10.00 0.00 0.00 8.16 0.00 0.00 3.45 0.00 2.94 0.00 0.00 6.25 4.00 0.00 10.00 9.09 0.00 5.26 3.33 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 3.85 K alternative_first_exon wech chr2R - chr2R_3373673_3377324,chr2R_3373673_3376837 chr2R_3373673_3375960 chr2R_3377325_3377343 chr2R_3375961_3376191 chr2R_3373390_3373672 53.12 53.12 46.34 43.64 48.39 37.14 43.90 33.80 46.08 54.55 65.79 50.00 34.21 47.37 50.00 45.00 39.47 46.34 50.00 68.12 63.33 55.56 75.00 67.57 61.90 44.44 65.38 62.50 65.00 33.33 45.00 77.78 44.23 38.24 58.62 61.90 55.56 62.07 63.64 50.00 77.78 46.84 36.84 51.22 94.12 78.26 76.92 29.31 42.17 93.94 56.67 76.19 58.33 82.35 39.22 85.00 82.35 50.00 K alternative_first_exon Pax chr2L - chr2L_19410644_19410844;chr2L_19410644_19419868;chr2L_19410644_19426205 chr2L_19410644_19411536 chr2L_19419869_19420191;chr2L_19426206_19426424 chr2L_19411537_19411719 chr2L_19410480_19410643 4.89 6.29 4.26 2.94 4.10 3.65 5.75 3.85 5.83 4.30 6.76 4.42 5.21 4.17 3.66 5.12 3.79 2.92 3.70 5.74 6.52 2.48 8.59 4.68 4.35 4.76 6.29 6.73 6.76 5.97 3.18 5.32 5.70 4.31 6.03 8.11 5.36 6.57 8.51 6.01 4.44 3.22 3.65 7.06 6.00 9.21 6.50 4.62 3.32 9.57 3.63 2.44 1.85 8.75 4.89 9.57 3.37 1.35 K alternative_first_exon Pde8 chr2R + chr2R_19545538_19552816 chr2R_19548057_19552816 chr2R_19545099_19545537 chr2R_19547895_19548056 chr2R_19552817_19553410 17.48 15.22 13.58 29.50 17.24 15.32 18.42 20.09 18.32 14.67 14.29 13.36 18.42 17.78 16.89 19.13 17.97 17.76 18.99 17.44 13.28 33.33 17.74 13.77 18.55 15.34 14.93 13.46 19.61 17.97 12.27 19.67 23.58 19.05 18.02 20.62 17.54 15.13 11.05 12.00 31.51 16.90 20.87 15.51 16.87 17.35 18.56 20.72 15.94 14.71 16.26 18.85 12.05 17.11 13.33 19.05 17.48 24.72 K alternative_first_exon heph chr3R - chr3R_27805342_27806176;chr3R_27805342_27811214,chr3R_27805342_27810955 chr3R_27805342_27807024 chr3R_27806177_27806317;chr3R_27811215_27811487 chr3R_27807025_27807179 chr3R_27805245_27805341 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon CG32264 chr3L - chr3L_3769407_3799885 chr3L_3769407_3780422 chr3L_3799886_3801288 chr3L_3780423_3781412 chr3L_3769242_3769406 96.30 94.12 100.00 96.30 100.00 100.00 95.00 100.00 97.37 100.00 100.00 96.55 100.00 100.00 100.00 93.33 100.00 100.00 100.00 97.37 100.00 91.18 97.30 96.00 95.65 100.00 95.83 93.33 90.48 95.45 100.00 100.00 96.88 96.15 92.00 92.00 95.83 96.15 94.59 94.12 91.67 97.22 100.00 95.65 94.44 94.74 94.74 96.30 96.30 100.00 96.43 100.00 92.86 93.33 94.12 94.44 100.00 100.00 K alternative_first_exon fu12 chr2L - chr2L_8451005_8463626 chr2L_8451005_8451453 chr2L_8463627_8463990 chr2L_8451454_8451901 chr2L_8450794_8451004 0.00 0.00 0.00 20.00 NA NA 0.00 NA 14.29 0.00 20.00 0.00 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 6.25 0.00 0.00 20.00 0.00 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon Mhcl chr3R - chr3R_11899125_11902835 chr3R_11899125_11900139 chr3R_11902836_11903063 chr3R_11900140_11901886 chr3R_11898756_11899124 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 0.00 0.00 5.56 4.00 3.70 0.00 5.56 0.00 16.67 0.00 0.00 0.00 0.00 4.76 0.00 0.00 6.67 3.03 0.00 0.00 4.17 0.00 2.63 0.00 0.00 0.00 0.00 0.00 9.09 2.94 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon hrg chr2R - chr2R_15555984_15556622;chr2R_15555984_15556751 chr2R_15555984_15556294 chr2R_15556752_15557326 chr2R_15556295_15556565 chr2R_15555859_15555983 1.80 2.34 2.05 3.96 1.80 2.17 2.70 2.54 2.39 0.89 2.31 2.82 1.77 2.13 1.81 2.18 2.24 1.92 2.86 1.63 1.39 1.88 2.25 2.26 2.00 1.70 1.54 2.82 0.51 1.30 1.75 0.99 0.72 3.24 1.48 1.92 1.32 0.97 0.67 0.74 1.61 1.95 1.61 2.61 0.00 0.61 3.26 0.84 2.19 2.04 2.00 0.93 1.11 0.00 1.52 1.28 1.23 0.45 K alternative_first_exon Ilp6 chrX - chrX_2226173_2226308,chrX_2226173_2226571;chrX_2226173_2227352 chrX_2226173_2226376 chrX_2227353_2228691 chrX_2226377_2226441 chrX_2225959_2226172 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 2.47 0.00 0.00 0.00 0.00 0.00 0.00 1.52 1.79 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 1.75 0.99 K alternative_first_exon CG12567 chr2LHet - chr2LHet_21570_32923,chr2LHet_21570_32572 chr2LHet_21570_32402 chr2LHet_32924_32927 chr2LHet_32403_32464 chr2LHet_21436_21569 0.00 0.00 0.00 0.00 0.00 2.50 1.20 0.00 1.11 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.56 0.00 0.00 0.00 K alternative_first_exon CG18812 chr2R - chr2R_3613501_3613799,chr2R_3613501_3614693;chr2R_3613501_3615446 chr2R_3613501_3614875 chr2R_3615447_3615701 chr2R_3614876_3615012 chr2R_3613373_3613500 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 1.69 0.00 0.00 2.04 1.18 0.00 0.00 0.00 0.00 0.00 0.00 3.94 0.00 0.00 0.00 0.00 1.05 2.13 0.00 0.00 1.54 0.00 0.00 0.00 0.00 1.23 0.59 0.00 0.00 0.82 0.00 0.00 0.00 1.33 0.00 1.43 1.27 0.00 0.91 1.32 0.00 0.00 0.00 1.79 1.23 0.00 0.00 1.85 K alternative_first_exon zip chr2R - chr2R_20898140_20898480,chr2R_20898140_20898992;chr2R_20898140_20899373;chr2R_20898140_20898622 chr2R_20898140_20898898,chr2R_20898140_20898834 chr2R_20899374_20899488;chr2R_20898623_20898731 chr2R_20898899_20898996 chr2R_20897903_20898139 97.62 100.00 98.04 97.35 98.00 97.60 97.41 97.97 97.23 97.47 98.15 97.87 98.75 98.67 97.21 97.10 97.93 97.18 98.32 97.43 97.60 97.06 94.25 91.53 95.83 97.66 94.55 95.71 99.51 97.16 98.37 98.15 98.03 98.33 96.55 94.57 97.67 95.56 98.25 98.35 99.05 98.23 97.97 96.59 96.67 98.57 91.84 98.36 97.32 100.00 96.30 96.23 97.62 93.33 98.03 97.50 100.00 98.68 K alternative_first_exon ImpL2 chr3L - chr3L_4225707_4225972,chr3L_4225707_4226245,chr3L_4225707_4226564;chr3L_4225707_4225883;chr3L_4225707_4226573 chr3L_4225707_4235902 chr3L_4225884_4225950;chr3L_4226574_4227270 chr3L_4235903_4236147 chr3L_4224927_4225706 0.17 0.37 0.16 0.10 0.19 0.37 0.20 0.39 0.40 0.10 0.23 0.35 0.66 0.39 0.33 0.32 0.21 0.21 0.31 0.16 0.21 0.04 0.15 0.08 0.23 0.17 0.16 0.07 0.23 0.15 0.21 0.13 0.06 0.21 0.00 0.09 0.07 0.11 0.07 0.18 0.08 0.17 0.47 0.16 0.08 0.00 0.22 0.06 0.19 0.20 0.16 0.14 0.21 0.00 0.14 0.26 0.17 0.13 K alternative_first_exon CG11984 chr3R - chr3R_4839215_4839655,chr3R_4839215_4839728,chr3R_4839215_4839799,chr3R_4839215_4839889,chr3R_4839215_4840394;chr3R_4839215_4839561;chr3R_4839215_4839300;chr3R_4839215_4840589,chr3R_4839215_4840474;chr3R_4839215_4839966 chr3R_4839215_4839851 chr3R_4839562_4839754;chr3R_4839301_4839365;chr3R_4840590_4840610;chr3R_4839967_4840095 chr3R_4839852_4839944 chr3R_4839038_4839214 5.26 8.33 8.33 6.00 8.00 3.85 5.26 7.02 7.14 5.56 3.23 5.00 10.34 0.00 9.38 6.25 4.00 3.85 8.57 12.50 0.00 3.17 5.00 8.00 5.56 5.71 4.76 0.00 3.33 3.23 7.69 4.76 4.08 8.33 3.33 0.00 0.00 0.00 5.88 3.90 0.00 8.22 9.38 4.88 0.00 6.67 9.68 7.69 12.31 10.00 0.00 9.09 0.00 0.00 7.89 3.45 10.53 1.56 K alternative_first_exon pbl chr3L - chr3L_7895376_7900221 chr3L_7895376_7896295 chr3L_7900222_7900438 chr3L_7896296_7896679 chr3L_7895240_7895375 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon pAbp chr2R + chr2R_14027838_14028996 chr2R_14028460_14028996,chr2R_14028464_14028996,chr2R_14028922_14028996 chr2R_14027583_14027837 chr2R_14028322_14028459 chr2R_14028997_14029177 100.00 90.00 NA 95.45 NA NA 100.00 100.00 100.00 NA NA 100.00 91.67 100.00 NA 100.00 100.00 NA 100.00 91.67 NA 100.00 100.00 100.00 NA NA 100.00 92.86 100.00 100.00 NA NA 100.00 100.00 NA NA 100.00 NA 100.00 100.00 NA 100.00 NA 100.00 NA NA NA 100.00 100.00 NA NA 100.00 NA NA 100.00 NA 100.00 100.00 K alternative_first_exon Hrb27C chr2L + chr2L_6921441_6922734;chr2L_6921799_6922734 chr2L_6920862_6922734 chr2L_6921286_6921440;chr2L_6921666_6921798 chr2L_6920693_6920861 chr2L_6922735_6922826 87.50 NA NA 88.89 NA NA NA 100.00 84.62 NA NA 62.50 NA 87.50 NA 80.00 85.71 NA 87.50 100.00 NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 91.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 75.00 NA NA NA NA NA 71.43 NA NA NA K alternative_first_exon Jafrac2 chr3L + chr3L_3042451_3043440 chr3L_3043390_3043440 chr3L_3042375_3042450 chr3L_3043272_3043389 chr3L_3043441_3043846 98.95 100.00 99.04 98.11 98.68 100.00 98.96 97.84 99.36 100.00 98.44 100.00 96.97 98.61 98.11 99.24 100.00 98.72 98.89 98.95 100.00 97.44 100.00 98.25 100.00 100.00 99.18 100.00 95.65 96.97 100.00 98.41 98.85 100.00 100.00 100.00 100.00 100.00 99.19 98.37 96.72 98.17 97.18 98.88 95.35 97.52 98.91 90.77 100.00 99.09 98.96 98.25 99.03 98.85 98.97 99.05 98.93 97.35 K alternative_first_exon glo chr3R - chr3R_7644683_7644743,chr3R_7644683_7644880,chr3R_7644683_7644908;chr3R_7644683_7644932 chr3R_7644683_7644739 chr3R_7644933_7645142 chr3R_7644740_7644793 chr3R_7644295_7644682 10.25 10.87 12.00 13.33 13.89 11.90 12.37 13.19 7.27 5.56 17.14 8.99 7.84 14.58 11.54 6.73 8.33 NA 11.32 10.23 13.33 8.64 8.75 17.07 10.26 18.00 9.84 4.76 11.11 5.36 13.04 6.00 6.45 7.00 10.81 4.88 9.52 18.18 13.04 10.00 10.26 6.80 10.81 4.00 7.14 11.76 10.26 8.82 8.94 10.81 14.29 8.11 6.52 15.15 13.64 8.33 8.47 5.26 K alternative_first_exon mam chr2R + chr2R_9897038_9897667;chr2R_9879610_9897667 chr2R_9896744_9897667 chr2R_9879483_9879609 chr2R_9896703_9896743 chr2R_9897668_9898686 4.39 3.45 4.88 5.88 9.09 7.89 4.35 4.00 5.62 0.00 4.35 7.14 5.41 4.44 7.32 2.63 2.70 2.86 1.67 11.11 2.94 7.14 2.63 6.67 0.00 0.00 0.00 NA 7.69 3.85 3.33 4.76 5.00 6.25 3.12 0.00 13.33 9.52 5.26 3.33 9.09 7.14 4.88 2.27 30.00 5.26 4.35 0.00 2.86 4.76 4.17 0.00 0.00 8.33 5.56 9.68 3.85 4.35 N alternative_first_exon C3G chrX - chrX_6683085_6685800;chrX_6683085_6689481;chrX_6683085_6694082;chrX_6683085_6697139 chrX_6683085_6683744 chrX_6685801_6685924;chrX_6689482_6689611;chrX_6694083_6694724;chrX_6697140_6697579 chrX_6683745_6685194 chrX_6682494_6683084 15.38 15.79 20.00 6.45 13.33 20.00 15.15 11.11 15.69 11.11 15.38 10.20 11.11 14.29 15.79 12.50 15.00 9.09 11.54 16.13 15.38 25.53 19.23 15.00 18.75 20.00 16.67 23.08 15.38 10.00 15.00 14.29 8.33 11.76 21.43 23.53 22.73 23.08 25.00 20.00 20.00 18.92 15.00 26.32 10.00 13.33 12.50 12.00 12.12 12.50 14.29 12.50 10.00 20.00 15.38 22.22 16.67 16.67 K alternative_first_exon Pdp1 chr3L - chr3L_7813130_7818683;chr3L_7813130_7860340;chr3L_7813130_7823486 chr3L_7813130_7846282 chr3L_7818684_7820387;chr3L_7860341_7860472;chr3L_7823487_7824927 chr3L_7846283_7847289 chr3L_7813088_7813129 0.00 20.00 0.00 66.67 0.00 0.00 25.00 25.00 0.00 0.00 0.00 0.00 0.00 33.33 0.00 25.00 25.00 0.00 0.00 17.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.00 0.00 0.00 0.00 25.00 0.00 0.00 0.00 0.00 0.00 0.00 25.00 0.00 33.33 0.00 33.33 0.00 0.00 25.00 0.00 0.00 25.00 0.00 33.33 50.00 0.00 20.00 0.00 K alternative_first_exon spen chr2L + chr2L_182914_183760,chr2L_175448_183760;chr2L_163002_183760 chr2L_183420_183760 chr2L_162592_163001 chr2L_182871_183419 chr2L_183761_185082 14.29 8.33 14.29 19.05 11.76 7.14 12.50 13.89 16.67 23.08 13.33 11.76 16.00 13.64 9.52 17.24 12.50 25.00 13.64 8.00 42.86 4.35 8.33 20.00 0.00 15.79 20.00 35.71 14.29 15.38 7.69 NA 30.00 16.22 23.08 14.29 6.25 NA NA 13.64 NA 12.12 10.53 30.00 NA NA NA 20.83 14.29 NA 18.18 11.11 NA NA 14.29 NA NA 25.00 K alternative_first_exon gro chr3R + chr3R_21868657_21868716,chr3R_21868266_21868716,chr3R_21868622_21868716;chr3R_21867624_21868716;chr3R_21868626_21868716;chr3R_21867907_21868716,chr3R_21867987_21868716 chr3R_21868535_21868716 chr3R_21867432_21867623;chr3R_21868542_21868625;chr3R_21867852_21867906 chr3R_21868363_21868534 chr3R_21868717_21869101 12.79 13.24 11.94 15.79 22.22 12.96 22.78 12.79 15.83 12.82 9.52 10.08 16.98 14.93 12.16 11.65 18.87 16.67 15.94 7.59 9.43 17.24 12.20 11.76 12.50 13.79 18.33 25.00 8.93 13.04 11.11 7.41 9.52 12.73 6.78 12.33 21.33 13.11 17.65 9.22 15.00 12.78 14.00 13.43 7.69 8.93 7.46 9.71 14.17 10.61 14.85 15.62 6.00 7.84 15.00 11.54 14.55 7.95 K alternative_first_exon CG7082 chr2L + chr2L_2222443_2223242;chr2L_2220952_2223242;chr2L_2222299_2223242 chr2L_2222771_2223242 chr2L_2220767_2220951;chr2L_2222106_2222298 chr2L_2222657_2222770 chr2L_2223243_2223633 0.00 5.88 0.00 0.00 0.00 0.00 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon Hmgs chr2R + chr2R_12224952_12226951,chr2R_12224482_12226951;chr2R_12226703_12226951;chr2R_12225927_12226951,chr2R_12225942_12226951 chr2R_12224369_12226951 chr2R_12226622_12226702;chr2R_12225809_12225926 chr2R_12223595_12224368 chr2R_12226952_12228760 82.35 90.91 79.17 84.21 83.33 85.71 75.51 82.98 87.50 91.30 75.00 72.13 88.89 76.00 76.92 85.29 78.95 72.73 88.89 80.00 87.50 82.76 90.62 75.00 76.00 71.43 68.57 82.76 88.89 92.00 75.00 90.91 82.05 75.00 76.47 87.50 89.66 86.36 80.00 76.19 88.46 80.00 72.73 81.63 80.56 84.09 70.97 86.54 78.46 73.33 82.35 89.29 85.71 73.68 71.43 91.30 95.24 83.02 K alternative_first_exon cnc chr3R - chr3R_19023699_19035063 chr3R_19023699_19025874 chr3R_19035064_19035142 chr3R_19025875_19026372 chr3R_19023622_19023698 16.67 35.71 14.29 13.79 10.00 10.00 16.67 20.00 15.00 14.29 28.57 22.73 45.45 16.67 12.50 21.74 22.22 30.00 16.67 33.33 NA 12.50 15.79 22.22 11.76 12.50 17.65 16.67 7.14 40.00 12.00 NA 15.38 16.67 25.00 35.71 16.67 11.11 15.38 20.00 8.33 18.18 23.53 20.00 14.29 14.29 12.50 17.65 20.69 14.29 26.67 22.22 NA NA 20.00 25.00 20.00 NA K alternative_first_exon kto chr3L + chr3L_19836090_19836293 chr3L_19836230_19836293 chr3L_19835778_19836089 chr3L_19836194_19836229 chr3L_19836294_19836600 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 1.10 0.00 0.00 K alternative_first_exon Klp10A chrX - chrX_11030129_11030277;chrX_11030129_11030272;chrX_11030129_11030651 chrX_11030129_11030899 chrX_11030273_11030510;chrX_11030652_11030703 chrX_11030900_11031056 chrX_11028913_11030128 82.57 77.78 75.93 82.02 75.00 85.71 86.15 87.06 82.57 80.00 70.00 85.71 80.00 75.56 80.39 85.71 82.50 77.78 84.21 80.91 75.56 83.56 80.95 83.33 80.00 87.23 87.10 86.67 82.05 87.23 84.91 90.48 88.71 90.20 84.38 86.11 81.82 87.10 79.31 83.61 86.21 78.95 78.05 89.66 82.35 82.35 86.96 87.50 88.78 91.67 86.11 88.89 76.47 77.78 81.82 78.57 71.43 80.49 K alternative_first_exon cnn chr2R - chr2R_9332644_9333051 chr2R_9332644_9332715 chr2R_9333052_9333095 chr2R_9332716_9332879 chr2R_9332270_9332643 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 4.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon CG6783,sea chr3R - chr3R_7386928_7390161;chr3R_7386928_7387922 chr3R_7386928_7388947 chr3R_7390162_7390433;chr3R_7387923_7388017 chr3R_7388948_7389004 chr3R_7386574_7386927 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 2.63 0.00 4.76 3.45 0.00 7.69 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.61 2.78 3.70 0.00 0.00 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.57 4.76 4.76 2.44 0.00 0.00 0.00 K alternative_first_exon fbl chr3L + chr3L_20381467_20381768,chr3L_20381664_20381768,chr3L_20381129_20381768;chr3L_20379955_20381768;chr3L_20381668_20381768;chr3L_20381102_20381768 chr3L_20377959_20381768 chr3L_20379392_20379954;chr3L_20381514_20381667;chr3L_20380716_20381101 chr3L_20377531_20377958 chr3L_20381769_20381947 79.73 79.75 73.33 64.47 77.19 75.44 79.76 79.44 78.12 81.43 76.00 75.19 70.18 73.77 78.31 74.12 80.70 73.91 72.88 80.00 77.61 81.40 83.85 80.36 82.35 78.12 81.55 83.08 85.06 83.33 81.90 83.02 85.84 74.07 84.06 78.05 85.51 79.31 82.31 83.23 83.87 77.30 74.55 81.00 87.34 83.15 75.53 79.73 74.81 79.07 77.57 83.05 76.92 81.48 79.27 83.33 78.65 80.83 K alternative_first_exon Jafrac1 chrX + chrX_13224064_13225154,chrX_13223890_13225154,chrX_13224713_13225154;chrX_13223998_13225154 chrX_13224569_13225154 chrX_13223881_13223997 chrX_13224432_13224568 chrX_13225155_13226029 0.21 0.22 0.21 0.15 0.00 0.00 0.17 0.23 0.10 0.21 0.26 0.26 0.00 0.21 0.00 0.11 0.27 0.24 0.36 0.09 0.25 0.38 0.31 0.34 0.68 0.00 0.54 0.93 0.31 0.16 0.11 0.37 0.23 0.12 0.00 0.31 0.00 0.00 0.22 0.34 0.29 0.10 0.00 0.14 0.32 0.14 0.44 0.10 0.10 0.00 0.37 0.18 0.28 0.33 0.00 0.15 0.51 0.00 K alternative_first_exon CG9992 chrX - chrX_16277201_16278620 chrX_16277201_16277356 chrX_16278621_16278937 chrX_16277357_16277611 chrX_16276939_16277200 73.68 69.09 72.73 43.18 78.57 74.00 41.57 69.47 66.67 91.67 75.00 55.95 44.83 60.78 75.00 65.91 67.86 92.16 71.23 69.61 68.89 66.67 78.79 77.05 58.06 64.44 79.41 86.49 64.86 75.56 73.68 81.40 76.27 71.59 70.73 44.44 72.73 88.00 83.61 86.21 71.43 70.59 64.91 76.00 83.67 76.79 84.78 75.00 70.19 80.33 79.66 80.00 74.19 69.44 76.56 80.43 78.00 73.33 K alternative_first_exon Trf4-1 chrX + chrX_8455293_8457185,chrX_8456196_8457185,chrX_8455902_8457185,chrX_8455795_8457185,chrX_8454992_8457185;chrX_8455100_8457185;chrX_8454847_8457185 chrX_8455225_8457185 chrX_8454960_8455099;chrX_8454668_8454846 chrX_8455113_8455224 chrX_8457186_8457580 5.41 6.45 5.26 10.00 0.00 6.25 4.55 7.55 7.14 11.76 8.70 3.33 6.90 3.23 7.32 5.66 7.14 6.06 5.41 5.66 3.23 5.56 3.03 0.00 0.00 4.17 0.00 0.00 6.25 11.11 3.45 0.00 8.33 5.45 11.11 8.70 4.35 0.00 3.12 9.30 0.00 3.08 6.67 10.00 0.00 4.55 0.00 13.04 6.78 5.88 6.67 5.26 0.00 0.00 2.94 0.00 0.00 10.00 K alternative_first_exon CG42245,MEP-1 chr3L + chr3L_2636996_2637067;chr3L_2636002_2637067;chr3L_2633810_2637067 chr3L_2636968_2637067 chr3L_2635762_2636001;chr3L_2633538_2633809 chr3L_2636905_2636967 chr3L_2637068_2639553 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon CG2246 chr3R - chr3R_26421349_26421442;chr3R_26421349_26427138,chr3R_26421349_26426922 chr3R_26421349_26425845 chr3R_26427139_26427211 chr3R_26425846_26426026 chr3R_26421112_26421348 55.56 60.00 50.00 60.00 58.82 61.90 58.06 57.69 60.00 40.00 46.15 60.00 52.94 64.71 60.00 57.69 90.00 58.33 55.00 55.32 52.94 58.82 54.17 64.00 53.33 63.16 57.69 47.06 36.84 50.00 60.87 44.44 31.82 75.00 50.00 46.43 55.56 62.50 48.15 45.65 33.33 57.14 55.56 50.00 52.00 52.94 50.00 25.81 56.00 54.55 50.00 64.29 56.67 85.71 77.27 52.63 64.52 46.34 K alternative_first_exon AcCoAS chr3L - chr3L_21266790_21272574 chr3L_21266790_21269294 chr3L_21272575_21273343 chr3L_21269295_21269445 chr3L_21266051_21266789 0.00 0.00 0.00 0.99 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon CG31689 chr2L + chr2L_2730373_2736173,chr2L_2730470_2736173 chr2L_2730893_2736173 chr2L_2730126_2730372 chr2L_2730838_2730892 chr2L_2736174_2736430 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 NA 0.00 0.00 0.00 0.00 K alternative_first_exon CG11334 chr3R - chr3R_27287691_27288551 chr3R_27287691_27287756 chr3R_27288552_27288730 chr3R_27287757_27287900 chr3R_27287536_27287690 3.92 4.17 1.41 2.70 2.13 3.92 7.27 4.40 7.69 3.57 2.13 12.66 6.98 2.08 2.63 5.13 5.13 7.69 6.00 5.26 2.22 10.00 3.57 6.25 2.70 5.00 6.38 3.45 3.70 3.85 14.12 3.03 3.23 5.13 2.94 2.78 5.80 7.14 6.15 3.53 0.00 1.89 4.26 3.33 4.35 8.00 3.77 2.78 7.22 4.08 10.00 9.09 4.00 2.38 1.56 3.77 2.35 2.22 K alternative_first_exon Mmp1 chr2R - chr2R_20569965_20575418;chr2R_20569965_20572229 chr2R_20569965_20574525 chr2R_20575419_20575704;chr2R_20572230_20572613 chr2R_20574526_20574897 chr2R_20569737_20569964 9.77 10.08 8.87 7.85 8.25 10.64 10.98 9.18 11.55 10.77 10.84 8.93 8.22 8.27 12.07 6.06 7.81 12.24 7.93 10.95 10.71 12.67 8.96 9.15 10.48 9.84 8.33 12.63 13.64 10.53 12.84 9.88 8.57 9.40 7.69 8.90 10.87 9.77 12.93 13.92 8.97 9.69 7.77 8.85 8.74 7.29 6.67 10.38 12.50 12.99 8.70 10.40 16.67 9.76 8.47 10.00 11.48 9.33 K alternative_first_exon Hsc70-4 chr3R + chr3R_11069864_11070081,chr3R_11068693_11070081,chr3R_11068450_11070081,chr3R_11068736_11070081,chr3R_11069819_11070081;chr3R_11069017_11070081;chr3R_11070025_11070081;chr3R_11068903_11070081,chr3R_11068907_11070081 chr3R_11068522_11070081 chr3R_11068920_11069016;chr3R_11069941_11070024;chr3R_11068878_11068902 chr3R_11068370_11068521 chr3R_11070082_11072336 99.49 99.63 99.38 99.73 99.09 99.82 99.49 99.51 99.52 99.32 99.64 99.38 99.41 99.73 99.71 99.57 99.31 99.69 99.49 99.40 99.74 99.71 99.68 99.53 99.36 99.61 99.58 99.11 99.02 99.36 99.48 98.95 99.65 99.44 99.74 99.49 98.89 98.92 99.34 99.21 99.39 99.45 99.42 99.56 99.49 99.38 99.75 99.38 99.49 99.45 99.62 99.54 99.57 99.76 99.55 99.57 99.69 99.68 K alternative_first_exon bves chrX + chrX_20925350_20931521 chrX_20925770_20931521 chrX_20925034_20925349 chrX_20925578_20925769 chrX_20931522_20932584 85.71 85.71 71.43 90.00 NA NA 84.62 80.00 94.74 NA NA 90.91 85.71 NA 85.71 75.00 NA NA 88.89 86.67 85.71 80.00 NA 66.67 NA NA NA 85.71 NA NA 92.31 NA 90.91 100.00 NA NA NA 71.43 NA 88.89 87.50 92.31 NA NA NA 85.71 100.00 88.89 78.57 83.33 77.78 NA NA NA 85.71 NA NA 90.00 K alternative_first_exon C1GalTA chr2L - chr2L_8945535_8950977,chr2L_8945535_8950769 chr2L_8945535_8946462 chr2L_8950978_8951200 chr2L_8946463_8946602 chr2L_8945358_8945534 20.35 18.99 15.38 28.34 26.56 22.47 22.42 23.12 21.28 31.82 16.67 20.26 20.83 20.35 20.00 22.28 17.24 14.94 21.97 21.47 20.00 22.83 19.35 15.38 16.00 22.69 9.09 17.78 28.95 16.67 21.43 27.27 16.88 19.78 20.55 17.86 15.69 26.47 12.82 15.00 23.33 20.35 18.80 11.86 25.58 23.91 17.19 33.70 21.39 30.59 8.70 21.15 18.18 17.39 22.30 15.22 16.35 33.64 K alternative_first_exon p130CAS chr3L + chr3L_153305_167475 chr3L_161372_167475 chr3L_152884_153304 chr3L_160806_161371 chr3L_167476_167619 100.00 95.83 100.00 97.62 94.74 100.00 95.74 97.14 96.08 100.00 100.00 97.73 94.44 100.00 96.88 94.74 100.00 100.00 96.15 100.00 100.00 95.59 97.92 100.00 100.00 95.83 97.87 98.70 100.00 100.00 100.00 100.00 98.31 97.56 100.00 95.35 100.00 100.00 97.83 98.21 100.00 97.92 100.00 100.00 100.00 100.00 100.00 98.08 95.45 100.00 97.73 96.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_first_exon lolal chr2R - chr2R_14043671_14043736,chr2R_14043671_14043740,chr2R_14043671_14043901,chr2R_14043671_14044074,chr2R_14043671_14044191,chr2R_14043671_14044461,chr2R_14043671_14045189,chr2R_14043671_14045264,chr2R_14043671_14045285;chr2R_14043671_14044260,chr2R_14043671_14044251;chr2R_14043671_14045477,chr2R_14043671_14045446;chr2R_14043671_14045350 chr2R_14043671_14043772 chr2R_14044261_14044395;chr2R_14045478_14045487;chr2R_14045351_14045444 chr2R_14043773_14043823 chr2R_14043397_14043670 2.63 5.00 2.00 0.00 0.00 3.45 2.70 1.59 1.52 4.76 0.00 1.82 3.03 2.50 2.27 1.69 3.03 0.00 2.56 2.78 7.14 5.00 0.00 5.56 NA 2.63 7.14 5.26 2.22 2.94 2.27 0.00 2.63 1.56 5.00 4.76 NA NA 7.14 1.75 0.00 2.56 2.63 0.00 0.00 4.17 0.00 2.63 1.18 4.55 5.56 NA 0.00 16.67 3.64 7.14 10.71 0.88 K alternative_first_exon Npc2b chr3R + chr3R_9916599_9917019;chr3R_9915322_9917019 chr3R_9916602_9917019 chr3R_9915245_9915321 chr3R_9916496_9916601 chr3R_9917020_9917123 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA NA NA NA NA 100.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon Ca-P60A chr2R - chr2R_19820338_19820541,chr2R_19820338_19820765,chr2R_19820338_19820817,chr2R_19820338_19820955;chr2R_19820338_19821213;chr2R_19820338_19823102 chr2R_19820338_19820781 chr2R_19821214_19821281;chr2R_19823103_19823219 chr2R_19820782_19821070 chr2R_19820190_19820337 77.26 72.41 71.05 75.32 73.05 70.43 79.06 72.17 74.27 78.34 74.18 73.65 68.48 74.49 74.55 76.73 72.49 73.08 72.86 73.21 74.38 83.23 77.26 82.07 80.14 72.54 76.09 79.34 76.79 83.25 79.84 75.73 83.64 72.91 79.29 81.94 80.71 77.68 82.18 78.25 84.30 72.38 75.00 85.78 72.88 79.64 81.34 81.36 70.60 80.00 78.30 79.67 80.17 85.25 73.83 83.18 80.65 83.42 K alternative_first_exon CG10107 chr3L - chr3L_6740090_6740958 chr3L_6740090_6740201 chr3L_6740959_6741070 chr3L_6740202_6740405 chr3L_6739971_6740089 11.76 10.00 11.11 10.81 10.00 19.05 10.00 9.52 17.95 11.11 11.76 21.43 16.67 20.00 14.81 24.32 11.11 17.24 14.29 21.28 14.29 8.89 13.64 8.57 10.00 7.41 10.00 11.11 6.25 14.29 14.00 17.39 11.76 17.07 20.00 7.14 9.68 20.00 10.00 9.09 9.38 11.54 18.18 25.00 7.69 9.38 14.29 13.64 14.89 11.11 13.16 10.53 17.65 17.65 17.86 11.11 11.11 27.08 K alternative_first_exon CG11537 chr3L - chr3L_3133339_3133648;chr3L_3133339_3142827;chr3L_3133339_3133948 chr3L_3133339_3139750 chr3L_3142828_3143454;chr3L_3133949_3134180 chr3L_3139751_3139956 chr3L_3132633_3133338 0.00 NA 0.00 14.29 NA NA 16.67 NA 11.11 0.00 NA 20.00 NA 20.00 33.33 NA 0.00 NA 0.00 NA 0.00 0.00 11.11 0.00 0.00 14.29 NA 0.00 0.00 0.00 0.00 NA 0.00 20.00 0.00 0.00 NA NA NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 16.67 NA 0.00 NA NA NA 0.00 0.00 NA 0.00 N alternative_first_exon CG32280 chr3L + chr3L_3167902_3167941,chr3L_3165352_3167941,chr3L_3165407_3167941,chr3L_3165390_3167941;chr3L_3165704_3167941;chr3L_3165222_3167941 chr3L_3165255_3167941 chr3L_3165334_3165703;chr3L_3165182_3165221 chr3L_3165230_3165254 chr3L_3167942_3168265 25.00 NA NA NA NA NA NA NA 28.57 0.00 NA 20.00 NA NA NA 14.29 NA NA NA 33.33 NA 11.11 44.44 NA NA NA NA NA 14.29 NA NA NA NA 16.67 NA NA 20.00 NA NA 16.00 NA NA NA NA 25.00 33.33 25.00 4.17 NA 45.45 25.00 NA NA NA NA NA 40.00 28.57 K alternative_first_exon wapl chrX - chrX_2049760_2050421 chrX_2049760_2049820 chrX_2050422_2051546 chrX_2049821_2049977 chrX_2047147_2049759 17.50 14.55 17.95 15.38 24.24 17.95 9.38 16.67 20.51 15.00 21.21 20.83 27.59 27.27 17.50 25.71 17.86 23.08 30.56 22.09 16.13 4.76 11.25 14.47 13.04 20.59 18.87 5.26 8.51 14.29 16.67 25.00 12.12 24.59 12.00 11.32 8.05 5.45 3.85 19.75 13.79 21.59 27.27 19.51 10.87 14.29 17.31 13.85 23.94 16.36 24.24 18.92 15.38 17.95 23.81 24.44 14.29 25.53 K alternative_first_exon sdt chrX + chrX_8087420_8098205;chrX_8086195_8098205 chrX_8087540_8098205 chrX_8086137_8086194 chrX_8087235_8087539 chrX_8098206_8098336 100.00 100.00 100.00 92.00 95.00 95.65 100.00 96.88 98.28 100.00 100.00 95.74 94.12 96.30 96.67 95.45 94.74 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.12 90.91 94.44 100.00 100.00 100.00 100.00 85.71 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 95.45 95.00 96.55 100.00 82.35 90.91 100.00 98.18 92.31 96.30 100.00 100.00 100.00 96.97 93.33 83.33 92.31 K alternative_first_exon CG2924 chrX - chrX_2163738_2164440;chrX_2163738_2164731 chrX_2163738_2164670 chrX_2164732_2164789 chrX_2164671_2164712 chrX_2162971_2163737 9.09 NA NA 27.27 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 9.09 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 7.69 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_first_exon par-1 chr2R + chr2R_15355419_15356294,chr2R_15355073_15356294;chr2R_15353200_15356294;chr2R_15348122_15356294 chr2R_15355147_15356294 chr2R_15351815_15353199;chr2R_15347300_15348121 chr2R_15355019_15355146 chr2R_15356295_15357843 60.00 78.57 56.25 73.68 33.33 60.00 70.83 83.33 52.08 55.00 58.33 60.00 46.15 54.55 73.68 72.22 55.00 81.82 70.00 67.57 66.67 46.15 69.70 50.00 47.62 41.67 55.00 57.14 71.43 68.00 70.59 55.56 40.54 79.31 55.56 26.42 40.00 61.11 60.00 64.29 62.50 52.78 52.94 71.43 56.25 66.67 72.22 58.06 65.00 60.00 73.33 66.67 53.33 44.44 71.43 72.73 46.67 47.62 K alternative_first_exon spir chr2L + chr2L_20343287_20343598,chr2L_20343339_20343598;chr2L_20340113_20343598 chr2L_20342482_20343598 chr2L_20339980_20340112 chr2L_20341853_20342481 chr2L_20343599_20343672 1.92 1.61 1.72 1.52 0.00 2.33 3.64 1.41 2.56 3.12 3.12 1.47 3.33 2.50 1.61 2.38 0.00 2.08 2.17 1.43 2.86 2.17 2.60 1.45 1.96 2.27 2.63 8.91 3.08 1.43 1.19 0.00 1.61 1.11 1.67 6.25 1.67 1.69 0.00 2.41 1.56 1.92 0.00 1.67 2.33 1.45 1.82 3.28 2.35 2.00 3.12 3.12 2.56 0.00 1.54 1.92 0.00 2.17 K alternative_first_exon CG11984 chr3R - chr3R_4839215_4839655,chr3R_4839215_4839728,chr3R_4839215_4839799,chr3R_4839215_4839889,chr3R_4839215_4840394;chr3R_4839215_4839561;chr3R_4839215_4839851;chr3R_4839215_4839300;chr3R_4839215_4840589,chr3R_4839215_4840474 chr3R_4839215_4839966 chr3R_4839562_4839754;chr3R_4839852_4839944;chr3R_4839301_4839365;chr3R_4840590_4840610 chr3R_4839967_4840095 chr3R_4839038_4839214 1.59 2.78 0.00 2.00 0.00 3.85 2.63 5.26 1.19 0.00 3.23 2.50 3.45 3.03 3.12 0.00 0.00 0.00 0.00 1.79 0.00 1.59 0.00 8.00 0.00 0.00 2.38 3.70 6.67 3.23 2.56 0.00 2.04 0.00 3.33 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 2.44 0.00 2.22 3.23 0.00 3.08 2.50 2.94 3.03 0.00 0.00 2.63 0.00 0.00 0.00 K alternative_first_exon CG13784 chr2L - chr2L_7208582_7218908 chr2L_7208582_7209348 chr2L_7218909_7220029 chr2L_7209349_7209462 chr2L_7208417_7208581 94.74 92.86 92.86 89.29 100.00 92.31 96.67 96.15 93.75 100.00 93.75 96.88 92.31 78.57 88.24 86.67 92.86 91.67 91.67 91.30 93.33 96.55 96.67 95.83 100.00 92.86 97.06 95.83 87.50 94.74 95.00 90.91 94.74 96.30 91.67 95.45 100.00 100.00 96.15 97.50 86.67 90.62 94.12 97.56 100.00 94.12 94.44 94.74 95.65 89.47 95.83 95.45 100.00 NA 94.44 100.00 100.00 90.91 N alternative_first_exon Mekk1 chr3R - chr3R_14564321_14564771;chr3R_14564321_14568722 chr3R_14564321_14565018 chr3R_14568723_14569280 chr3R_14565019_14565818 chr3R_14564120_14564320 59.80 59.32 56.06 57.69 55.32 52.83 64.37 55.43 59.38 66.67 50.98 53.45 60.38 57.89 51.52 55.56 54.90 54.55 55.88 58.33 58.82 56.44 66.40 66.67 62.71 54.10 59.80 44.44 61.25 64.63 62.03 60.47 63.91 60.61 60.94 62.34 66.34 59.70 60.49 68.75 65.31 60.80 53.57 66.28 62.79 65.52 56.82 62.81 59.46 62.75 58.76 64.71 51.61 65.52 54.79 57.89 60.61 60.00 K alternative_first_exon pnt chr3R - chr3R_19139281_19163617 chr3R_19139281_19139386 chr3R_19163618_19163708 chr3R_19139387_19140031 chr3R_19139164_19139280 4.72 3.88 4.22 2.81 5.00 2.63 5.17 4.30 4.28 8.96 3.08 3.97 2.10 4.02 4.24 3.76 4.72 3.25 5.03 4.83 3.55 4.35 8.70 7.87 7.29 6.15 8.06 7.02 5.49 9.48 3.90 5.32 5.65 5.20 8.79 10.62 6.56 4.30 5.00 4.41 8.05 4.01 3.76 8.62 3.73 8.21 4.49 4.10 4.55 5.94 5.31 7.00 3.95 7.46 4.68 5.36 3.57 3.23 K alternative_first_exon CG2017 chr3R - chr3R_1686127_1687510,chr3R_1686127_1688016;chr3R_1686127_1686928,chr3R_1686127_1686711;chr3R_1686127_1688092,chr3R_1686127_1687891 chr3R_1686127_1687468 chr3R_1686929_1687019;chr3R_1688093_1688116 chr3R_1687469_1687624 chr3R_1685454_1686126 32.29 29.41 27.78 44.44 34.04 34.29 35.29 39.71 31.48 22.00 43.18 35.92 33.33 34.09 35.42 34.04 36.84 36.54 38.89 30.84 31.91 26.50 20.41 29.35 35.48 41.54 32.35 26.13 42.31 25.53 35.42 29.41 27.08 31.94 32.84 29.11 20.93 20.45 24.42 32.67 32.56 30.61 43.59 32.65 30.77 32.29 23.88 34.78 42.25 42.11 30.00 25.00 36.84 25.37 31.48 22.89 11.90 30.56 K alternative_first_exon M6 chr3L + chr3L_21500724_21504190;chr3L_21501368_21504190 chr3L_21503381_21504190 chr3L_21500952_21501367 chr3L_21502981_21503380 chr3L_21504191_21504350 33.33 40.00 33.33 14.29 50.00 33.33 25.00 8.33 30.00 57.14 25.00 25.00 NA 16.67 25.00 25.00 25.00 50.00 14.29 26.67 25.00 80.00 25.00 57.14 33.33 40.00 44.44 33.33 55.56 NA 18.18 25.00 20.00 15.79 37.50 57.14 60.00 42.86 37.50 50.00 NA 37.50 25.00 27.27 NA 37.50 40.00 40.00 35.71 50.00 30.77 25.00 66.67 20.00 14.29 40.00 28.57 50.00 K alternative_first_exon galectin chr2L + chr2L_73586_74902,chr2L_74573_74902,chr2L_73898_74902;chr2L_72978_74902 chr2L_73693_74902 chr2L_72388_72977 chr2L_73485_73692 chr2L_74903_75018 31.25 48.33 38.89 21.13 31.25 38.00 26.21 35.29 39.25 43.24 27.03 21.70 30.51 35.71 42.03 36.99 48.78 21.43 35.38 35.05 28.95 21.62 40.48 19.23 32.14 49.09 17.72 11.86 25.53 14.00 30.23 26.32 23.53 37.17 30.56 25.00 32.00 25.53 30.43 34.69 38.71 33.02 36.96 29.79 31.25 30.77 39.22 42.37 35.40 35.00 27.78 28.07 35.71 40.00 23.81 36.00 26.32 31.03 K alternative_first_exon CG7220 chr2R + chr2R_6619302_6623324 chr2R_6620302_6623324 chr2R_6619084_6619301 chr2R_6620208_6620301 chr2R_6623325_6623560 0.00 NA NA NA NA NA NA NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA 9.09 NA NA NA NA NA NA NA NA NA 0.00 NA NA NA 0.00 NA NA NA 14.29 NA NA NA NA 0.00 12.50 NA 0.00 0.00 NA NA NA NA NA NA NA NA 0.00 K alternative_first_exon tra2 chr2R - chr2R_10491007_10491488 chr2R_10491007_10491238 chr2R_10491489_10491643 chr2R_10491239_10491430 chr2R_10490853_10491006 13.89 16.67 20.69 6.98 4.35 7.41 23.53 20.51 21.43 6.90 21.74 24.59 23.53 23.53 16.67 14.81 12.00 7.69 34.62 12.70 9.52 24.32 10.20 23.81 3.70 14.29 13.89 4.76 10.53 15.79 15.79 9.38 15.49 NA 14.29 5.26 11.11 12.20 14.00 10.39 9.30 15.38 26.32 18.18 19.23 12.73 13.89 14.55 10.17 10.26 13.16 25.93 13.89 9.52 25.93 11.90 11.76 9.86 K alternative_first_exon Ef1alpha48D chr2R + chr2R_7780877_7781059,chr2R_7780840_7781059,chr2R_7780580_7781059;chr2R_7779690_7781059 chr2R_7779892_7781059 chr2R_7779597_7779689 chr2R_7779804_7779891 chr2R_7781060_7783025 0.02 0.02 0.02 0.02 0.00 0.02 0.02 0.01 0.02 0.00 0.02 0.03 0.03 0.02 0.00 0.03 0.02 0.02 0.06 0.07 0.02 0.01 0.03 0.02 0.03 0.06 0.04 0.03 0.08 0.06 0.08 0.04 0.12 0.02 0.02 0.02 0.01 0.00 0.02 0.04 0.23 0.03 0.04 0.06 0.04 0.15 0.00 0.22 0.04 0.05 0.01 0.02 0.02 0.05 0.04 0.00 0.01 0.28 K alternative_first_exon 14-3-3zeta chr2R + chr2R_5987237_5991760,chr2R_5991249_5991760;chr2R_5987244_5991760,chr2R_5987356_5991760 chr2R_5988603_5991760,chr2R_5988683_5991760 chr2R_5987193_5987243 chr2R_5988537_5988602 chr2R_5991761_5991914 35.86 37.36 28.39 31.93 37.55 30.58 34.86 27.87 39.17 54.46 34.78 28.90 24.84 37.32 25.92 33.14 30.57 33.21 31.24 30.04 25.17 59.35 35.96 40.40 35.62 23.91 34.23 57.73 64.63 58.94 34.80 53.57 61.43 28.78 34.15 34.97 53.64 40.65 39.62 59.38 46.73 32.38 30.84 50.34 48.15 58.82 38.71 64.23 34.57 42.93 27.49 48.17 41.53 21.35 27.10 35.86 51.90 67.14 K alternative_first_exon gw chr4 - chr4_679135_680594,chr4_679135_680693,chr4_679135_681128,chr4_679135_682359;chr4_679135_680546,chr4_679135_680503,chr4_679135_680270,chr4_679135_680185;chr4_679135_681206,chr4_679135_681054 chr4_679135_679976 chr4_680547_680557;chr4_681207_681222 chr4_679977_680181 chr4_678528_679134 6.12 6.67 5.00 10.53 NA 6.67 5.08 6.33 7.04 NA 13.33 6.12 7.69 5.26 4.76 5.63 4.17 0.00 2.56 15.15 7.69 8.33 0.00 7.69 NA 4.00 6.67 NA NA 5.26 4.17 NA 7.14 7.81 5.00 8.70 NA NA NA 4.17 NA 7.69 10.00 5.56 NA NA NA 7.14 7.46 NA 4.00 0.00 NA NA 3.57 NA NA 0.00 K alternative_first_exon ttk chr3R + chr3R_27550933_27552853,chr3R_27552215_27552853,chr3R_27552651_27552853;chr3R_27539992_27552853;chr3R_27551595_27552853 chr3R_27551054_27552853 chr3R_27539591_27539991;chr3R_27551503_27551594 chr3R_27550731_27551053 chr3R_27552854_27553156 50.00 52.38 52.94 52.63 43.75 59.09 55.17 52.38 55.36 43.75 60.00 42.50 42.86 53.33 51.85 74.19 56.52 52.38 53.85 52.63 57.14 39.29 41.67 55.00 46.67 59.09 40.00 35.00 56.25 37.50 55.56 50.00 50.00 56.82 44.00 42.11 32.00 41.67 37.50 48.72 42.86 54.76 54.17 45.83 57.14 42.11 46.67 45.45 53.06 31.82 50.00 42.86 46.15 42.86 53.57 50.00 37.50 66.67 K alternative_first_exon growl chr3R + chr3R_229514_230190;chr3R_229003_230190 chr3R_229176_230190 chr3R_228771_229002 chr3R_229126_229175 chr3R_230191_230361 0.14 0.21 0.00 0.00 0.23 0.22 0.00 0.30 0.26 0.00 0.00 0.11 0.00 0.25 0.00 0.00 0.00 0.20 0.00 0.17 0.41 0.00 0.11 0.15 0.19 0.19 0.43 0.11 0.12 0.16 0.56 0.23 0.09 0.14 0.45 0.18 0.13 0.00 0.14 0.07 0.00 0.19 0.27 0.00 0.00 0.17 0.22 0.00 0.11 0.77 0.14 0.65 0.00 0.00 0.34 0.24 0.23 0.00 N alternative_first_exon chb chr3L + chr3L_21170546_21171196;chr3L_21166146_21171196;chr3L_21171043_21171196 chr3L_21169629_21171196 chr3L_21165953_21166145;chr3L_21170961_21171042 chr3L_21168900_21169628 chr3L_21171197_21176378 98.55 97.73 97.73 97.10 100.00 97.50 98.46 97.62 98.15 97.73 97.56 91.21 100.00 100.00 98.08 98.55 97.62 100.00 96.43 98.88 100.00 100.00 100.00 98.18 100.00 97.92 100.00 97.73 97.96 100.00 96.15 100.00 100.00 98.86 100.00 98.00 100.00 100.00 100.00 99.01 100.00 100.00 100.00 100.00 100.00 100.00 97.14 100.00 97.83 96.30 98.31 100.00 100.00 95.24 98.33 96.55 96.97 98.31 K alternative_first_exon CG9098 chr2L - chr2L_6010671_6011554 chr2L_6010671_6010964 chr2L_6011555_6011726 chr2L_6010965_6011203 chr2L_6010313_6010670 0.00 NA 0.00 NA NA NA NA NA 7.14 0.00 NA 0.00 NA 0.00 0.00 NA NA NA 14.29 0.00 NA 0.00 0.00 NA NA NA NA NA NA 0.00 11.11 NA 0.00 14.29 0.00 NA 0.00 NA 0.00 11.11 NA 0.00 NA 0.00 NA NA 10.00 7.14 0.00 NA 0.00 NA NA NA 0.00 NA NA 0.00 K alternative_first_exon CG14425,Sxl chrX - chrX_6986156_6992033,chrX_6986156_6991977 chrX_6986156_6991030 chrX_6992034_6992086 chrX_6991031_6991094 chrX_6985707_6986155 14.81 NA NA NA NA NA NA NA 11.76 NA NA 20.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 14.81 NA NA NA NA NA NA NA NA NA NA 20.00 NA NA NA NA NA NA 5.56 NA NA NA NA NA NA NA NA NA K alternative_first_exon SNF4Agamma chr3R + chr3R_16967034_16980611 chr3R_16979420_16980611 chr3R_16966463_16967033 chr3R_16979018_16979419 chr3R_16980612_16980793 25.00 20.00 20.00 44.44 25.00 20.00 45.45 33.33 38.46 NA 20.00 36.36 33.33 40.00 33.33 40.00 28.57 16.67 25.00 25.00 50.00 25.00 37.50 20.00 25.00 33.33 40.00 33.33 20.00 42.86 36.36 NA 16.67 30.77 25.00 25.00 NA 0.00 0.00 28.57 0.00 18.18 33.33 60.00 NA 20.00 NA 33.33 40.00 14.29 22.22 50.00 25.00 NA 16.67 NA 25.00 20.00 K alternative_first_exon Pu chr2R + chr2R_17067156_17067442;chr2R_17063179_17067442 chr2R_17067102_17067442,chr2R_17067150_17067442 chr2R_17062822_17063178 chr2R_17066624_17067101 chr2R_17067443_17067652 10.55 20.00 0.00 16.67 0.00 16.67 20.00 0.00 10.00 NA NA 7.69 NA 0.00 12.50 NA NA 0.00 14.29 15.38 0.00 18.18 8.33 0.00 16.67 0.00 20.00 NA NA 16.67 0.00 NA 0.00 10.00 NA 16.67 0.00 12.50 0.00 8.33 0.00 14.29 0.00 11.11 0.00 10.00 20.00 16.67 11.11 12.50 0.00 0.00 NA 25.00 11.11 20.00 14.29 NA K alternative_first_exon scaf chr2R - chr2R_1575544_1579156 chr2R_1575544_1578292 chr2R_1579157_1579200 chr2R_1578293_1578711 chr2R_1575181_1575543 2.70 3.70 3.03 1.56 6.25 3.33 4.17 3.03 3.33 3.57 6.25 2.00 5.56 0.00 0.00 3.70 3.85 0.00 2.44 8.11 5.00 1.82 1.92 2.78 4.00 2.44 4.00 5.56 4.55 0.00 2.70 6.67 0.00 1.96 0.00 4.76 0.00 0.00 0.00 0.00 0.00 1.89 4.55 0.00 0.00 0.00 0.00 5.56 6.25 0.00 3.57 0.00 0.00 NA 3.23 0.00 3.57 NA K alternative_first_exon heph chr3R - chr3R_27805342_27807024;chr3R_27805342_27811214,chr3R_27805342_27810955 chr3R_27805342_27806176 chr3R_27807025_27807179;chr3R_27811215_27811487 chr3R_27806177_27806317 chr3R_27805245_27805341 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon Imp chrX - chrX_10693027_10707281;chrX_10693027_10693783 chrX_10693027_10699298 chrX_10707282_10708126;chrX_10693784_10693957 chrX_10699299_10699502 chrX_10692652_10693026 54.55 48.15 56.41 58.73 53.03 56.92 57.03 54.55 52.63 51.16 63.01 53.38 59.30 51.76 57.33 57.05 58.02 53.62 56.82 57.42 54.69 52.17 48.28 43.90 47.50 56.00 60.32 65.31 67.39 57.14 47.87 60.00 57.78 57.42 45.95 61.11 51.28 45.24 43.90 55.71 70.83 52.34 53.52 46.27 60.00 65.52 45.45 65.71 53.79 53.57 47.69 44.44 54.17 42.86 54.26 54.55 53.12 70.59 K alternative_first_exon PP2A-B' chr3R + chr3R_13993517_13995378,chr3R_13995271_13995378;chr3R_13993590_13995378 chr3R_13993929_13995378 chr3R_13993451_13993589 chr3R_13993859_13993928 chr3R_13995379_13995820 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA 0.00 0.00 NA NA NA NA NA NA NA NA K alternative_first_exon vari chr2L - chr2L_20792267_20793967,chr2L_20792267_20794059;chr2L_20792267_20796036 chr2L_20792267_20794118 chr2L_20796037_20796134 chr2L_20794119_20794263 chr2L_20792114_20792266 61.54 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 61.54 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon sbb chr2R - chr2R_14175894_14175951;chr2R_14175894_14177039 chr2R_14175894_14176064 chr2R_14177040_14177355 chr2R_14176065_14176255 chr2R_14175632_14175893 4.35 1.96 0.00 6.35 3.23 5.56 7.14 5.66 6.59 2.86 3.03 4.65 2.78 2.94 4.00 9.76 2.86 2.78 2.63 2.25 5.71 7.35 6.85 5.71 8.51 2.78 3.77 4.76 6.25 5.36 5.88 6.67 3.33 8.20 4.76 4.08 1.10 3.57 1.35 2.22 6.98 5.19 3.03 5.36 3.33 4.08 4.08 4.35 5.41 3.08 6.67 5.26 0.00 0.00 4.35 4.88 6.38 3.85 K alternative_first_exon CG10512 chr3L + chr3L_21196423_21198776 chr3L_21198609_21198776 chr3L_21196020_21196422 chr3L_21198374_21198608 chr3L_21198777_21199726 33.33 NA NA NA NA NA NA NA 33.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 20.00 NA NA 40.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon tlk chrX + chrX_3656891_3675687,chrX_3634238_3675687,chrX_3674212_3675687,chrX_3618905_3675687;chrX_3615681_3675687;chrX_3674723_3675687;chrX_3667068_3675687 chrX_3670471_3675687,chrX_3671394_3675687 chrX_3615409_3615680;chrX_3674176_3674722;chrX_3666673_3667067 chrX_3670092_3670470 chrX_3675688_3677592 47.83 37.04 50.00 42.86 42.86 42.86 42.86 40.98 43.59 52.38 50.00 41.07 38.71 39.29 41.94 40.35 40.74 48.15 45.95 50.00 55.00 47.22 47.83 51.43 64.00 37.93 63.33 38.89 58.62 52.63 40.00 44.44 60.00 45.76 53.12 60.00 51.28 57.14 63.64 48.89 56.25 50.00 44.00 48.57 50.00 50.00 45.00 64.15 46.67 41.18 45.24 64.52 50.00 37.50 43.24 50.00 30.77 60.87 K alternative_first_exon Sema-1b chr2R - chr2R_13566288_13566648;chr2R_13566288_13570897;chr2R_13566288_13566564 chr2R_13566288_13570399 chr2R_13570898_13571000;chr2R_13566565_13566747 chr2R_13570400_13570499 chr2R_13565777_13566287 0.00 3.85 0.00 0.00 0.00 0.00 0.00 1.52 3.57 0.00 0.00 0.00 0.00 0.00 3.70 0.00 2.56 0.00 0.00 2.33 0.00 0.00 8.33 0.00 0.00 0.00 9.52 10.00 7.69 4.76 0.00 NA 6.25 1.39 0.00 8.70 0.00 NA 9.09 0.00 0.00 3.57 0.00 4.55 NA 0.00 NA 3.03 1.59 NA 3.03 0.00 NA NA 2.78 0.00 11.11 0.00 K alternative_first_exon CG4857 chrX + chrX_4014172_4014328,chrX_4013839_4014328;chrX_4013922_4014328;chrX_4014134_4014328;chrX_4013803_4014328 chrX_4013051_4014328 chrX_4013902_4013921;chrX_4014114_4014133;chrX_4013724_4013802 chrX_4012389_4013050 chrX_4014329_4014457 97.96 97.67 97.44 98.97 98.33 96.67 96.10 98.97 95.60 96.72 94.74 97.96 96.49 98.33 98.70 97.26 96.30 96.83 96.72 99.25 96.43 97.83 99.24 97.20 98.81 93.22 99.08 95.45 100.00 97.56 97.76 98.00 98.91 97.03 100.00 98.78 98.25 99.00 99.30 97.54 97.56 97.93 98.04 98.81 98.39 98.44 96.51 97.75 97.50 98.48 98.25 100.00 100.00 100.00 98.70 100.00 94.64 94.12 K alternative_first_exon Gpo-1 chr2R - chr2R_11748259_11750201;chr2R_11748259_11749386,chr2R_11748259_11749143;chr2R_11748259_11750187 chr2R_11748259_11748565 chr2R_11749387_11749454;chr2R_11750188_11750251 chr2R_11748566_11748849 chr2R_11748106_11748258 16.13 20.00 16.67 29.63 33.33 23.53 23.08 33.33 31.91 5.00 20.00 20.75 20.00 38.10 19.05 42.22 33.33 11.11 31.82 18.37 18.75 12.20 10.00 6.52 7.69 12.50 10.42 3.23 9.68 15.00 23.53 9.09 11.11 28.21 16.13 5.13 11.11 8.33 2.04 5.71 15.00 23.08 40.00 5.17 4.26 11.36 10.91 9.62 25.49 10.53 11.90 11.11 18.75 9.68 26.09 17.24 31.58 23.81 K alternative_first_exon exba chr3R - chr3R_1425087_1425302,chr3R_1425087_1426125;chr3R_1425087_1426736 chr3R_1425087_1426209,chr3R_1425087_1426009,chr3R_1425087_1425759 chr3R_1426737_1426891 chr3R_1426210_1426288 chr3R_1424838_1425086 17.61 16.05 17.39 9.74 10.40 20.00 8.76 14.29 11.89 22.97 13.70 18.18 11.54 13.86 18.95 12.91 15.54 21.80 16.02 23.31 21.77 15.34 17.75 13.95 13.89 13.22 18.40 24.51 18.57 20.31 10.97 26.32 44.05 17.09 17.92 24.55 19.58 21.30 21.25 24.12 18.06 17.29 18.11 18.09 25.00 26.11 14.89 26.09 16.47 17.61 14.66 11.39 19.32 17.02 14.29 15.62 12.65 37.78 K alternative_first_exon me31B chr2L + chr2L_10239586_10240491 chr2L_10240085_10240491 chr2L_10239326_10239585 chr2L_10239939_10240084 chr2L_10240492_10240591 0.00 0.00 0.00 0.83 0.00 1.96 0.00 0.00 0.00 0.00 0.00 0.00 1.25 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.80 2.94 2.08 0.00 3.57 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon dl chr2L - chr2L_17443006_17445248;chr2L_17443006_17449295 chr2L_17443006_17448277 chr2L_17445249_17445567;chr2L_17449296_17449368 chr2L_17448278_17448510 chr2L_17442652_17443005 4.55 1.85 1.85 4.29 2.08 5.88 8.08 3.26 2.99 4.00 2.27 5.48 2.17 4.76 7.14 8.06 2.86 7.14 6.00 2.60 4.88 6.78 4.92 5.77 2.70 6.25 4.55 20.00 4.00 3.39 8.51 4.00 2.56 6.38 5.41 4.55 5.17 2.70 5.41 3.39 3.03 1.89 5.56 6.67 3.85 4.76 9.52 3.85 4.26 6.12 3.12 8.57 5.26 4.76 4.29 2.70 5.00 2.17 K alternative_first_exon heph chr3R - chr3R_27805342_27807024;chr3R_27805342_27806176 chr3R_27805342_27811214,chr3R_27805342_27810955 chr3R_27807025_27807179;chr3R_27806177_27806317 chr3R_27811215_27811487 chr3R_27805245_27805341 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_first_exon th chr3L - chr3L_16033166_16033537,chr3L_16033166_16034018,chr3L_16033166_16037613;chr3L_16033166_16035506;chr3L_16033166_16043557 chr3L_16033166_16039584 chr3L_16035507_16035665;chr3L_16043558_16043755 chr3L_16039585_16039937 chr3L_16031505_16033165 96.02 95.31 96.41 97.76 96.69 96.47 96.37 96.96 96.85 97.25 94.64 94.71 96.04 95.69 95.88 96.27 96.63 93.97 96.96 88.64 93.42 94.49 94.13 96.14 97.07 96.48 96.70 91.67 93.28 96.36 93.45 97.68 97.01 96.39 95.16 97.54 90.86 94.89 92.54 95.09 96.35 96.02 96.32 96.32 94.93 95.18 93.81 96.26 96.97 95.60 94.97 95.71 95.38 95.07 95.94 93.66 97.33 96.63 K alternative_first_exon f-cup chr3R - chr3R_9524004_9524064;chr3R_9524004_9525813 chr3R_9524004_9524789 chr3R_9524065_9524581;chr3R_9525814_9525867 chr3R_9524790_9525263 chr3R_9523813_9524003 94.44 96.55 96.00 100.00 95.24 96.15 87.88 97.30 96.77 92.31 95.00 96.08 100.00 100.00 93.94 93.55 95.45 90.48 95.45 96.30 95.45 94.44 94.29 94.12 95.24 96.00 93.10 94.44 93.10 95.45 82.22 92.86 92.31 94.87 95.24 90.91 92.31 90.91 92.31 91.67 94.44 94.12 95.45 92.86 94.12 92.00 93.94 92.31 95.35 96.00 92.11 91.67 95.00 94.74 96.88 90.91 96.55 90.48 N alternative_first_exon CG15211 chrX + chrX_10666660_10671993 chrX_10667200_10671993 chrX_10666577_10666659 chrX_10666825_10667199 chrX_10671994_10672161 100.00 100.00 100.00 71.43 66.67 75.00 100.00 100.00 83.78 33.33 100.00 100.00 100.00 100.00 100.00 66.67 90.91 69.23 75.00 76.09 NA 100.00 75.00 75.00 60.00 100.00 62.07 57.58 42.11 100.00 75.00 88.89 92.31 100.00 100.00 100.00 60.00 72.22 67.74 100.00 100.00 86.84 100.00 74.47 70.83 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 66.67 59.09 100.00 K alternative_first_exon CG17746 chr3L - chr3L_3238983_3239421 chr3L_3238983_3239241 chr3L_3239422_3239520 chr3L_3239242_3239322 chr3L_3238612_3238982 0.00 0.00 4.26 1.43 2.13 0.00 0.00 0.00 0.82 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 2.13 1.10 0.00 4.71 0.00 0.00 0.00 0.00 2.50 2.94 2.56 0.00 0.00 0.00 0.00 0.00 0.00 3.57 0.99 0.00 0.00 1.30 4.35 0.00 2.13 0.00 0.00 0.00 1.92 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 K alternative_first_exon CaMKII chr4 - chr4_1071236_1071307,chr4_1071236_1071315,chr4_1071236_1071813,chr4_1071236_1072054;chr4_1071236_1071968;chr4_1071236_1074123 chr4_1071236_1071884,chr4_1071236_1071319 chr4_1071969_1071994;chr4_1074124_1074329 chr4_1071885_1071943 chr4_1071081_1071235 68.99 66.67 60.00 60.00 NA 52.94 54.55 67.21 78.26 NA 66.67 69.57 72.22 75.00 75.00 75.34 68.75 NA 68.57 68.57 61.90 77.78 62.50 50.00 NA 47.06 NA NA 58.82 73.33 67.50 92.86 81.48 60.00 NA 94.12 NA NA NA 71.43 73.91 70.27 69.23 71.43 80.00 75.00 NA 65.85 68.52 NA 66.67 90.00 NA NA 68.00 NA 72.73 79.03 K alternative_first_exon Eno chr2L - chr2L_1728233_1729549,chr2L_1728233_1729274 chr2L_1728233_1728361,chr2L_1728233_1728302 chr2L_1729550_1729578 chr2L_1728362_1728415 chr2L_1728054_1728232 93.75 92.31 91.67 89.47 NA NA 100.00 83.33 94.12 NA NA 94.12 NA NA NA 95.65 NA NA 93.75 93.75 NA NA 93.33 93.75 NA NA NA NA NA 100.00 95.24 NA 100.00 91.30 NA NA NA NA NA 100.00 NA 94.12 90.91 85.71 100.00 100.00 93.75 100.00 84.62 NA 100.00 NA NA 100.00 91.67 NA 90.91 92.31 K alternative_first_exon RpL31 chr2R + chr2R_5474844_5474951;chr2R_5474734_5474951 chr2R_5474789_5474951 chr2R_5474688_5474733 chr2R_5474740_5474788 chr2R_5474952_5475211 1.61 2.86 2.47 0.93 1.27 2.29 7.14 2.70 3.53 0.77 3.91 2.03 3.66 7.25 0.42 2.50 1.61 2.40 1.27 1.57 3.42 0.91 2.54 1.35 0.84 1.79 10.91 3.16 1.40 1.95 1.40 1.79 0.44 1.16 2.25 5.75 1.49 1.16 1.48 0.69 1.06 0.83 1.49 3.60 0.89 1.55 3.29 0.78 1.52 1.43 4.12 3.42 1.31 10.26 0.67 3.31 3.23 0.47 K alternative_first_exon CaMKII chr4 - chr4_1071236_1071307,chr4_1071236_1071315,chr4_1071236_1071813,chr4_1071236_1072054;chr4_1071236_1074123;chr4_1071236_1071884,chr4_1071236_1071319 chr4_1071236_1071968 chr4_1074124_1074329;chr4_1071885_1071943 chr4_1071969_1071994 chr4_1071081_1071235 3.63 0.00 4.00 10.00 NA 0.00 2.27 6.56 4.35 NA 8.33 2.17 5.56 3.57 0.00 4.11 0.00 NA 5.71 2.86 4.76 0.00 6.25 0.00 NA 5.88 NA NA 5.88 0.00 7.50 0.00 0.00 8.33 NA 0.00 NA NA NA 4.76 4.35 5.41 3.85 0.00 0.00 0.00 NA 2.44 3.70 NA 8.33 0.00 NA NA 4.00 NA 0.00 1.61 N alternative_first_exon CG8165,CG8176 chr3R + chr3R_5346246_5346774;chr3R_5341890_5346774 chr3R_5343223_5346774 chr3R_5341731_5341889 chr3R_5343169_5343222 chr3R_5346775_5347072 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.99 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 K alternative_first_exon Mmp1 chr2R - chr2R_20569965_20575418;chr2R_20569965_20574525 chr2R_20569965_20572229 chr2R_20575419_20575704;chr2R_20574526_20574897 chr2R_20572230_20572613 chr2R_20569737_20569964 39.66 39.50 37.10 43.39 31.96 34.75 32.16 43.88 40.73 56.92 37.35 42.26 42.47 38.35 39.66 44.44 42.97 38.78 42.68 42.29 39.29 45.67 40.80 32.68 33.06 36.89 35.12 38.95 49.09 49.34 33.49 61.73 72.00 38.35 42.86 36.99 36.96 30.83 30.17 46.91 70.34 40.70 45.63 43.75 62.14 54.17 34.87 75.96 39.84 27.27 36.09 32.80 37.50 36.59 40.68 38.00 25.14 76.67 K alternative_first_exon Ptpmeg chr3L + chr3L_351229_351366,chr3L_348644_351366,chr3L_347747_351366,chr3L_351317_351366,chr3L_347741_351366,chr3L_348218_351366;chr3L_329026_351366 chr3L_347659_351366,chr3L_347780_351366 chr3L_328989_329025 chr3L_347463_347658 chr3L_351367_351778 88.89 79.17 91.67 93.88 93.33 91.67 94.44 87.23 88.89 84.62 95.65 88.64 91.67 86.21 90.62 83.72 90.48 81.82 90.32 93.33 94.12 41.67 87.88 86.21 89.47 95.83 82.14 94.12 76.92 95.83 87.50 84.21 92.86 86.76 75.00 92.31 77.27 93.75 95.24 85.00 84.00 90.00 82.14 84.85 76.47 89.19 93.75 84.21 89.23 86.36 89.29 81.48 87.50 90.91 96.97 80.00 85.71 94.12 K alternative_first_exon Ard1,CG42455 chr3L + chr3L_9965498_9966193 chr3L_9966102_9966193 chr3L_9965343_9965497 chr3L_9965866_9966101 chr3L_9966194_9967123 17.24 17.24 20.00 28.57 9.09 21.43 16.67 18.75 12.90 15.00 28.57 18.18 27.78 14.29 8.33 18.42 21.74 14.81 20.00 14.63 34.78 20.00 20.00 18.75 22.22 23.53 21.43 30.43 13.64 12.00 16.67 5.41 5.08 26.67 5.26 25.00 9.38 9.52 17.86 13.16 11.43 13.51 26.09 22.86 2.86 8.62 16.00 3.57 13.04 17.24 18.92 10.34 9.52 20.83 17.39 23.33 13.64 2.96 K alternative_first_exon Mpcp chr3L + chr3L_14530949_14531103;chr3L_14530803_14531103 chr3L_14530935_14531103 chr3L_14530718_14530802 chr3L_14530826_14530934 chr3L_14531104_14531521 2.60 2.33 2.52 3.39 1.58 2.26 3.14 4.79 1.27 0.91 0.71 2.92 2.75 4.56 2.00 5.17 1.38 2.90 2.08 2.04 1.85 2.21 3.46 1.98 2.39 2.38 5.03 2.59 3.08 4.81 2.87 3.70 2.60 3.55 5.38 7.06 0.97 1.76 1.45 2.03 10.94 1.21 2.85 2.42 2.73 2.97 2.87 2.04 1.48 3.11 3.73 2.58 1.42 6.90 2.82 1.61 2.61 3.88 K alternative_first_exon CoRest chrX + chrX_19416977_19417035,chrX_19416431_19417035,chrX_19416603_19417035;chrX_19416423_19417035 chrX_19416669_19417035 chrX_19416060_19416422 chrX_19416457_19416668 chrX_19417036_19417348 35.53 30.34 40.98 36.99 37.10 38.98 35.59 35.53 38.06 30.77 39.13 30.17 32.00 38.89 37.68 37.14 33.33 43.86 42.59 42.48 41.18 35.14 28.45 27.10 32.26 36.99 36.36 35.48 37.70 34.62 42.03 38.18 39.74 37.93 27.85 36.25 29.61 27.10 32.73 39.37 33.33 38.89 31.91 29.03 27.27 33.80 29.17 30.23 36.00 31.51 30.84 27.94 36.62 35.38 40.96 30.26 38.67 29.69 K alternative_first_exon Ntf-2 chrX + chrX_20906749_20909772 chrX_20907665_20909772 chrX_20906501_20906748 chrX_20907566_20907664 chrX_20909773_20910263 99.67 100.00 99.65 99.73 100.00 99.60 100.00 99.78 100.00 99.08 100.00 99.77 99.58 99.59 99.70 99.74 100.00 99.62 99.67 99.79 99.54 98.94 99.64 99.66 99.42 99.68 99.34 99.36 98.40 99.43 99.67 99.53 99.36 99.77 99.59 99.47 100.00 100.00 100.00 99.71 99.67 99.80 99.57 100.00 99.26 99.73 99.55 98.67 99.81 100.00 99.69 99.50 99.56 99.65 99.70 99.71 100.00 99.69 K alternative_first_exon CG15814 chrX - chrX_17744102_17744321 chrX_17744102_17744245 chrX_17744322_17744396 chrX_17744246_17744310 chrX_17743941_17744101 53.33 59.46 54.84 48.57 43.33 50.00 68.97 54.84 43.66 57.89 48.28 59.57 55.00 55.17 48.28 73.33 46.15 54.55 51.72 49.35 46.67 57.14 55.56 50.00 57.58 55.00 61.54 45.45 50.00 50.00 57.50 55.17 46.67 58.82 54.55 59.26 51.19 51.11 50.00 54.76 53.33 40.68 52.17 71.43 42.86 57.14 50.00 50.00 50.77 65.52 59.46 42.86 58.33 61.54 36.11 52.38 55.88 36.54 K alternative_first_exon CG17600 chrX + chrX_21942325_21942595,chrX_21942540_21942595;chrX_21931228_21942595 chrX_21942421_21942595 chrX_21931106_21931227 chrX_21942334_21942420 chrX_21942596_21942713 53.33 NA NA NA NA NA NA NA 53.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon ftz-f1 chr3L - chr3L_18748974_18790636 chr3L_18748974_18756428 chr3L_18790637_18791955 chr3L_18756429_18758839 chr3L_18748756_18748973 85.71 84.62 88.89 85.71 87.50 63.64 77.78 71.43 95.00 90.91 63.64 94.12 63.64 85.71 80.00 58.33 85.71 87.50 87.50 95.45 85.71 89.47 82.76 84.21 85.71 87.50 92.86 88.89 81.82 91.67 66.67 66.67 88.24 76.47 84.62 93.75 89.29 87.50 90.48 75.00 75.00 95.00 75.00 57.14 88.89 87.50 63.64 76.47 85.71 70.00 84.21 53.85 81.82 87.50 81.82 87.50 85.71 77.78 K alternative_first_exon spi chr2L - chr2L_19571768_19571881,chr2L_19571768_19572142,chr2L_19571768_19572503,chr2L_19571768_19575517,chr2L_19571768_19577173;chr2L_19571768_19572499;chr2L_19571768_19575534 chr2L_19571768_19577185 chr2L_19572500_19572610;chr2L_19575535_19575587 chr2L_19577186_19577324 chr2L_19571572_19571767 73.43 73.60 75.00 80.83 74.65 80.00 83.87 83.89 83.12 60.87 74.23 75.95 88.46 79.37 79.37 78.63 82.11 72.12 81.77 76.32 69.72 83.33 65.66 56.25 71.00 77.78 72.14 70.37 62.75 64.17 77.30 62.63 54.02 81.41 69.64 77.71 69.66 63.11 69.57 68.24 57.89 74.91 78.36 69.44 57.47 68.67 70.74 44.94 78.29 70.80 67.65 68.69 82.93 73.43 79.52 65.27 80.18 53.03 K alternative_first_exon Klp10A chrX - chrX_11030129_11030277;chrX_11030129_11030899;chrX_11030129_11030651 chrX_11030129_11030272 chrX_11030900_11031056;chrX_11030652_11030703 chrX_11030273_11030510 chrX_11028913_11030128 4.55 5.56 7.41 3.37 3.57 2.86 3.08 2.35 2.75 4.00 6.67 5.95 2.86 2.22 3.92 2.20 2.50 2.22 3.51 4.55 4.44 4.11 11.90 7.14 13.33 4.26 9.68 6.67 7.69 4.26 3.77 4.76 1.61 2.94 6.25 5.56 4.55 3.23 6.90 4.92 6.90 6.32 7.32 6.90 5.88 8.82 4.35 3.57 2.04 4.17 5.56 7.41 11.76 11.11 3.64 7.14 14.29 7.32 K alternative_first_exon CG1600 chr2R - chr2R_3415482_3420257 chr2R_3415482_3416695,chr2R_3415482_3416532 chr2R_3420258_3420487 chr2R_3416696_3416766 chr2R_3414645_3415481 97.83 97.87 100.00 97.47 97.73 97.96 98.44 97.75 97.64 97.44 97.78 98.99 91.67 97.83 98.25 97.89 100.00 96.88 98.04 98.08 97.62 98.31 98.57 95.92 97.50 100.00 96.08 97.14 96.88 97.30 97.44 97.67 100.00 96.25 97.83 97.62 98.55 100.00 98.46 96.59 100.00 98.84 100.00 98.57 100.00 97.10 97.26 98.41 97.94 98.44 96.67 100.00 96.43 95.35 98.15 94.00 97.44 97.50 K alternative_first_exon akirin chr3L + chr3L_7363177_7364806;chr3L_7363169_7364806,chr3L_7363285_7364806 chr3L_7363651_7364806 chr3L_7362900_7363168 chr3L_7363440_7363650 chr3L_7364807_7365172 0.68 0.72 0.00 0.71 1.06 0.00 0.35 0.63 0.25 1.28 1.68 0.72 1.19 0.66 1.17 0.35 0.68 0.91 0.50 0.31 0.81 0.68 0.50 0.71 0.00 0.68 1.75 3.91 0.98 0.81 0.00 0.00 1.04 0.32 0.00 0.00 0.00 0.00 1.14 0.53 1.25 0.36 0.00 0.52 0.00 0.74 1.01 2.44 0.94 0.75 0.62 0.00 0.00 1.32 0.00 0.88 0.90 1.67 K alternative_first_exon G-oalpha47A chr2R + chr2R_6325600_6326879,chr2R_6326243_6326879;chr2R_6325802_6326879;chr2R_6325612_6326879 chr2R_6325857_6326879 chr2R_6325766_6325801;chr2R_6325466_6325611 chr2R_6325808_6325856 chr2R_6326880_6326950 0.00 NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA 0.00 NA 0.00 NA 0.00 NA 0.00 0.00 NA 0.00 NA NA NA 0.00 NA NA 7.69 K alternative_first_exon Idh chr3L - chr3L_8351036_8351115;chr3L_8351036_8353892 chr3L_8351036_8351655 chr3L_8351116_8351225;chr3L_8353893_8354031 chr3L_8351656_8352179 chr3L_8349503_8351035 33.33 NA NA NA NA NA 33.33 NA NA 33.33 NA 28.57 NA NA NA NA NA NA NA 50.00 NA 14.29 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 50.00 NA NA NA NA NA NA NA NA NA K alternative_first_exon Dif chr2L - chr2L_17420114_17427655;chr2L_17420114_17432857 chr2L_17420114_17428007 chr2L_17432858_17433161 chr2L_17428008_17428195 chr2L_17420066_17420113 50.00 48.57 53.57 57.63 35.29 52.38 52.54 44.62 62.75 81.25 54.17 47.76 42.86 51.22 44.44 41.33 48.72 36.84 28.57 56.98 54.84 60.66 39.06 45.16 44.00 34.78 38.10 50.00 78.72 69.09 36.36 72.22 78.69 48.33 62.96 58.00 72.97 42.86 33.33 60.94 84.38 47.06 42.11 64.44 79.41 71.74 59.26 83.53 47.56 41.67 44.19 35.90 56.41 44.44 37.50 58.62 41.46 82.18 K alternative_first_exon JhI-21 chr2L - chr2L_12055360_12055714;chr2L_12055360_12055901 chr2L_12055360_12055479 chr2L_12055902_12055982 chr2L_12055480_12055587 chr2L_12055085_12055359 2.12 2.60 0.75 3.26 0.00 1.74 3.18 2.97 1.66 4.71 0.96 2.12 2.33 1.28 2.36 2.86 1.61 1.38 1.79 1.02 2.22 2.63 0.98 0.99 2.25 1.53 2.30 2.13 13.70 2.25 0.86 3.39 4.76 1.44 5.71 3.39 0.92 0.88 1.29 2.48 6.52 1.04 3.08 1.00 3.23 4.88 2.74 6.06 3.43 1.41 1.52 1.87 0.00 0.00 1.89 1.04 0.00 6.90 K alternative_first_exon CG5976 chr3L + chr3L_20467744_20468664 chr3L_20468598_20468664 chr3L_20467566_20467743 chr3L_20468070_20468597 chr3L_20468665_20470103 76.19 72.73 69.57 78.57 77.78 73.68 71.05 66.67 73.33 81.82 86.96 77.50 70.00 78.95 73.91 69.44 76.19 68.18 64.29 82.00 73.91 84.21 80.00 78.26 78.57 72.73 91.30 92.86 80.95 87.50 78.57 63.16 62.50 67.50 76.92 85.71 88.89 90.91 94.74 77.14 61.90 68.75 63.16 85.00 73.33 61.90 64.71 60.87 67.35 58.82 85.00 80.00 73.91 82.35 72.41 77.78 85.71 65.79 K alternative_first_exon CG11505 chr3L + chr3L_3225834_3226876,chr3L_3226194_3226876;chr3L_3225289_3226876 chr3L_3226540_3226876 chr3L_3224838_3225288 chr3L_3226053_3226539 chr3L_3226877_3227705 32.50 34.78 30.51 31.58 32.50 28.36 37.23 41.38 33.82 30.95 26.92 30.15 33.33 36.11 30.14 34.02 42.11 31.58 36.36 35.40 37.50 35.53 30.61 28.07 24.07 34.33 29.33 29.09 35.19 33.33 30.68 42.11 38.46 34.51 32.20 37.50 29.82 25.58 23.68 33.67 39.13 32.03 33.93 39.71 35.00 31.58 35.00 30.61 35.25 22.22 24.18 28.57 38.10 27.27 31.17 30.00 21.43 39.29 K alternative_first_exon CG41378 chr2RHet - chr2RHet_1606049_1621636 chr2RHet_1606049_1621569,chr2RHet_1606049_1621473 chr2RHet_1621637_1621672 chr2RHet_1621570_1621578 chr2RHet_1605713_1606048 100.00 97.22 100.00 NA NA 100.00 100.00 98.39 98.44 NA NA 100.00 100.00 100.00 97.06 100.00 100.00 100.00 97.37 97.40 NA 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 96.15 100.00 96.88 94.12 98.41 100.00 100.00 100.00 100.00 96.67 97.44 95.45 100.00 100.00 97.78 94.12 97.62 100.00 96.43 100.00 100.00 100.00 100.00 100.00 96.15 100.00 100.00 97.73 94.55 K alternative_first_exon Aldh-III chr2R - chr2R_3361349_3361420;chr2R_3361349_3362846 chr2R_3361349_3362130,chr2R_3361349_3362076 chr2R_3361421_3361592;chr2R_3362847_3362882 chr2R_3362131_3362162 chr2R_3361227_3361348 0.00 5.88 0.00 0.00 0.00 0.00 0.00 0.00 7.14 NA NA 3.03 16.67 6.67 0.00 4.76 0.00 11.11 5.88 2.38 9.09 NA 0.00 0.00 0.00 14.29 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 3.70 6.67 0.00 0.00 4.35 0.00 0.00 3.45 0.00 0.00 0.00 8.33 0.00 9.52 7.14 6.25 0.00 K alternative_first_exon klar chr3L - chr3L_436850_443219 chr3L_436850_440493 chr3L_443220_443325 chr3L_440494_441079 chr3L_436674_436849 7.06 4.10 8.57 13.10 6.35 7.14 5.00 7.69 7.51 2.70 1.39 10.83 9.84 10.53 7.06 27.66 5.00 2.30 10.94 11.02 9.52 1.83 5.84 5.04 2.02 8.47 8.25 9.59 4.35 10.61 9.46 4.65 7.59 11.61 6.67 3.33 3.16 4.46 3.92 6.48 5.26 7.74 10.00 6.93 4.84 7.50 6.32 16.67 9.45 5.21 5.88 7.25 9.09 2.30 7.23 3.26 3.19 20.00 K alternative_first_exon CG11347 chr3L + chr3L_4407385_4417819;chr3L_4414859_4417819 chr3L_4414458_4417819 chr3L_4407145_4407384;chr3L_4414667_4414858 chr3L_4414360_4414457 chr3L_4417820_4418494 50.00 NA 62.50 52.63 NA NA 50.00 60.00 66.67 NA NA 42.86 42.86 44.44 77.78 47.62 14.29 NA 53.85 70.83 NA 65.00 60.00 37.50 66.67 NA NA 66.67 55.56 50.00 45.45 NA 57.14 36.36 50.00 66.67 37.50 NA NA 46.15 NA 41.67 NA 55.56 NA NA 68.75 33.33 45.45 44.44 50.00 NA NA NA 40.00 NA NA 57.14 K alternative_first_exon itp chr2R + chr2R_20428544_20442876 chr2R_20433214_20442876 chr2R_20427465_20428543 chr2R_20432950_20433213 chr2R_20442877_20443094 18.84 21.79 23.17 20.18 20.29 19.40 30.89 19.15 22.75 8.89 23.08 20.51 18.84 20.99 19.32 23.14 28.79 22.86 25.49 16.85 17.65 7.87 18.33 17.44 14.55 18.57 15.91 12.73 10.75 7.77 22.89 8.51 7.02 26.32 19.72 12.50 12.50 17.19 14.46 13.33 12.50 21.48 25.00 14.43 15.25 17.20 30.51 11.18 26.54 20.00 24.47 22.73 8.16 19.51 21.88 16.67 17.14 5.43 K alternative_first_exon CG3563 chr3R + chr3R_10590015_10613778;chr3R_10575996_10613778;chr3R_10611165_10613778 chr3R_10568314_10613778 chr3R_10575928_10575995;chr3R_10610648_10611164 chr3R_10567309_10568313 chr3R_10613779_10614341 59.57 65.38 58.06 57.89 59.09 61.90 50.00 56.86 55.41 76.47 81.25 59.65 54.17 53.12 66.67 59.57 45.45 59.26 62.07 74.55 63.16 52.00 48.98 58.06 52.38 53.57 44.44 14.89 70.00 51.43 58.06 75.00 73.17 61.22 69.23 50.00 70.59 46.15 62.96 55.77 78.57 58.62 60.00 43.33 68.42 72.00 70.59 70.59 55.93 41.67 51.52 56.00 64.29 73.33 74.07 75.00 76.47 85.71 K alternative_first_exon ttk chr3R + chr3R_27550933_27552853,chr3R_27552215_27552853,chr3R_27552651_27552853;chr3R_27539992_27552853;chr3R_27551054_27552853 chr3R_27551595_27552853 chr3R_27539591_27539991;chr3R_27550731_27551053 chr3R_27551503_27551594 chr3R_27552854_27553156 38.46 38.10 41.18 42.11 43.75 31.82 31.03 38.10 33.93 43.75 33.33 47.50 47.62 43.33 33.33 16.13 26.09 42.86 38.46 36.84 28.57 46.43 47.22 35.00 40.00 31.82 52.00 50.00 25.00 45.83 33.33 33.33 30.00 34.09 48.00 42.11 56.00 58.33 54.17 38.46 28.57 35.71 37.50 45.83 42.86 42.11 46.67 31.82 36.73 45.45 33.33 42.86 46.15 28.57 35.71 40.00 50.00 25.00 K alternative_first_exon CG6783,sea chr3R - chr3R_7386928_7390161;chr3R_7386928_7388947 chr3R_7386928_7387922 chr3R_7390162_7390433;chr3R_7388948_7389004 chr3R_7387923_7388017 chr3R_7386574_7386927 100.00 100.00 100.00 91.30 100.00 100.00 100.00 100.00 100.00 93.33 100.00 100.00 100.00 100.00 96.67 100.00 94.29 100.00 100.00 97.37 100.00 95.24 93.10 97.06 84.62 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 97.56 100.00 90.91 96.77 94.44 92.59 100.00 100.00 98.18 100.00 100.00 100.00 100.00 100.00 100.00 98.18 96.43 96.88 96.43 95.24 95.24 97.56 100.00 96.88 100.00 K alternative_first_exon CG3563 chr3R + chr3R_10590015_10613778;chr3R_10568314_10613778;chr3R_10575996_10613778 chr3R_10611165_10613778 chr3R_10567309_10568313;chr3R_10575928_10575995 chr3R_10610648_10611164 chr3R_10613779_10614341 1.82 0.00 3.23 1.75 0.00 4.76 5.00 3.92 1.35 0.00 0.00 1.75 4.17 3.12 0.00 4.26 4.55 0.00 3.45 1.82 0.00 16.00 2.04 0.00 0.00 3.57 2.78 4.26 5.00 2.86 3.23 0.00 2.44 2.04 3.85 6.25 2.94 0.00 0.00 3.85 0.00 3.45 0.00 0.00 0.00 0.00 0.00 2.94 1.69 0.00 3.03 4.00 0.00 0.00 3.70 0.00 0.00 0.00 K alternative_first_exon Stat92E chr3R - chr3R_16367815_16377802 chr3R_16367815_16376442 chr3R_16377803_16378034 chr3R_16376443_16376852 chr3R_16367402_16367814 82.76 87.88 85.19 81.82 75.00 85.19 84.00 84.72 87.16 88.00 72.73 80.95 90.91 82.35 78.12 87.72 89.29 88.06 76.47 80.95 82.61 75.68 82.86 77.78 76.47 86.67 74.19 82.76 87.50 78.26 77.50 91.67 77.14 81.67 80.65 90.00 96.43 87.50 65.22 82.98 66.67 80.95 86.49 86.21 66.67 64.71 91.67 81.82 82.35 78.57 73.08 87.88 86.67 75.00 89.58 85.71 90.91 92.59 K alternative_first_exon scny chr3L + chr3L_5767947_5768288,chr3L_5768114_5768288;chr3L_5763034_5768288 chr3L_5767177_5768288 chr3L_5762102_5763033 chr3L_5765533_5767176 chr3L_5768289_5768948 94.30 97.42 94.20 88.52 91.60 94.17 95.65 95.19 96.67 95.08 93.14 95.58 97.17 91.67 93.53 91.84 98.08 96.49 95.90 96.89 94.83 89.27 92.69 97.03 94.21 90.18 95.14 95.33 91.10 94.74 91.80 88.06 93.95 94.71 94.33 96.99 94.59 94.30 95.40 93.87 95.28 93.41 94.85 95.27 92.09 91.21 96.39 92.72 95.67 95.06 94.93 93.91 92.90 93.20 92.41 92.86 94.02 94.21 K alternative_first_exon CG42637,Gyc76C chr3L - chr3L_19783355_19783974;chr3L_19783355_19786553 chr3L_19783355_19783983 chr3L_19786554_19786663 chr3L_19783984_19784141 chr3L_19783064_19783354 63.64 60.00 63.64 71.43 NA NA 76.19 52.00 61.11 50.00 NA 77.78 52.94 66.67 75.00 61.29 57.14 52.94 65.00 47.62 75.00 77.78 74.19 81.82 83.33 66.67 92.31 58.33 50.00 75.00 55.56 NA 53.85 66.67 64.29 68.75 77.27 NA NA 53.85 NA 61.54 57.14 64.71 NA 63.64 75.00 26.32 60.71 75.00 86.67 63.64 62.50 NA 60.00 80.00 NA 42.86 K alternative_first_exon CG3967 chr3L - chr3L_9412372_9415965;chr3L_9412372_9419322;chr3L_9412372_9413187 chr3L_9412372_9412996 chr3L_9419323_9419777;chr3L_9413188_9413272 chr3L_9412997_9413032 chr3L_9412195_9412371 0.00 6.25 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 0.00 5.26 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon CG4857 chrX + chrX_4014172_4014328,chrX_4013839_4014328;chrX_4013051_4014328;chrX_4014134_4014328;chrX_4013803_4014328 chrX_4013922_4014328 chrX_4012389_4013050;chrX_4014114_4014133;chrX_4013724_4013802 chrX_4013902_4013921 chrX_4014329_4014457 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 0.63 0.00 0.00 0.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 1.79 0.00 0.00 0.00 0.00 1.69 0.00 1.52 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.82 0.00 0.00 1.96 0.00 1.61 0.00 1.16 1.12 0.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon Gmap chrX + chrX_15381667_15397615 chrX_15393496_15397615 chrX_15381574_15381666 chrX_15393043_15393495 chrX_15397616_15400494 20.00 15.79 11.76 4.76 8.33 16.67 30.43 27.78 18.42 31.25 9.09 12.50 14.29 20.00 10.00 48.00 20.00 25.00 9.09 11.11 11.76 22.22 21.21 18.52 40.00 6.67 28.57 40.00 12.50 18.75 41.38 16.67 11.11 23.81 35.71 21.05 14.81 20.00 21.74 24.24 8.33 11.90 20.00 34.48 25.00 38.89 50.00 24.00 28.00 14.29 34.48 30.77 28.57 22.22 7.69 28.57 20.00 23.81 K alternative_first_exon pod1 chrX + chrX_6699642_6699710,chrX_6699505_6699710,chrX_6699283_6699710;chrX_6699040_6699710;chrX_6697800_6699710;chrX_6698211_6699710 chrX_6699509_6699710 chrX_6699018_6699039;chrX_6697720_6697799;chrX_6697930_6698210 chrX_6699418_6699508 chrX_6699711_6700251 0.00 0.00 0.00 3.77 0.00 0.00 3.33 2.33 0.00 0.00 0.00 2.22 4.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.14 0.00 0.00 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.09 1.89 0.00 0.00 NA 0.00 0.00 0.00 1.92 NA 0.00 0.00 0.00 NA 2.56 NA 0.00 0.00 K alternative_first_exon PP2A-B' chr3R + chr3R_13994669_13995205;chr3R_13993929_13995205;chr3R_13994844_13995205 chr3R_13993590_13995205 chr3R_13993859_13993928;chr3R_13994500_13994843 chr3R_13993451_13993589 chr3R_13995206_13995820 75.00 66.67 73.33 84.38 75.00 85.71 67.65 76.32 80.95 NA 75.00 81.82 80.00 84.62 80.00 77.08 71.43 71.43 79.17 82.93 77.78 61.54 54.55 81.82 54.55 78.95 27.27 57.14 55.56 50.00 88.24 NA 61.54 81.82 77.78 57.14 NA 66.67 66.67 73.33 88.89 76.92 88.24 69.23 NA 66.67 66.67 78.57 77.78 62.50 81.82 63.64 71.43 NA 81.82 66.67 71.43 75.00 K alternative_first_exon dve chr2R + chr2R_18150949_18168171 chr2R_18158453_18168171 chr2R_18150270_18150948 chr2R_18158425_18158452 chr2R_18168172_18168381 0.00 NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA 0.00 0.00 0.00 NA NA 0.00 0.00 0.00 NA NA NA 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA 0.00 NA NA 0.00 NA NA NA NA NA NA NA K alternative_first_exon Camta chr2R + chr2R_5337780_5354376 chr2R_5346263_5354376 chr2R_5337251_5337779 chr2R_5345207_5346262 chr2R_5354377_5354468 14.29 15.79 6.25 32.35 13.33 12.50 19.23 7.69 14.29 11.76 14.29 15.38 9.09 5.88 10.00 11.11 9.09 7.14 13.33 15.00 7.14 39.62 17.65 16.67 27.78 16.67 10.34 17.65 27.27 14.29 11.11 20.00 14.29 14.81 26.09 24.14 16.67 15.38 15.15 13.33 18.18 12.20 7.69 14.29 18.18 7.14 22.22 21.43 12.50 10.00 12.00 15.38 25.00 12.50 10.00 18.18 9.09 18.75 K alternative_first_exon CG31678 chr2L - chr2L_20664210_20674994 chr2L_20664210_20664290 chr2L_20674995_20675570 chr2L_20664291_20664424 chr2L_20663998_20664209 1.72 0.00 3.12 3.61 2.00 0.00 7.50 0.00 1.56 2.63 9.26 2.54 1.89 1.72 2.78 0.00 4.17 10.20 1.67 2.78 4.00 1.30 0.82 2.38 3.77 1.64 1.16 3.45 1.85 0.00 3.03 3.12 1.33 1.94 1.82 1.39 1.08 1.49 1.20 1.11 6.82 2.42 3.92 1.45 2.44 1.89 0.00 1.47 2.80 0.00 0.00 2.13 0.00 0.00 1.37 0.00 0.00 1.67 K alternative_first_exon CG14619 chrX + chrX_21858875_21859262,chrX_21857858_21859262,chrX_21857923_21859262,chrX_21858374_21859262,chrX_21858580_21859262;chrX_21859028_21859262;chrX_21858396_21859262 chrX_21857700_21859262 chrX_21858727_21859027;chrX_21858282_21858395 chrX_21857639_21857699 chrX_21859263_21859387 75.00 NA 83.33 75.00 81.82 72.73 78.12 78.79 76.47 NA 91.67 75.76 89.47 78.57 73.68 73.08 82.35 73.33 85.00 58.62 80.00 NA 42.86 54.55 NA 63.64 62.50 NA NA NA 78.95 NA 56.52 81.25 NA 33.33 NA NA NA 52.94 NA 65.38 87.50 58.33 NA NA NA 64.29 74.42 NA NA NA NA NA 82.35 NA NA NA K alternative_first_exon CG11984 chr3R - chr3R_4839215_4839655,chr3R_4839215_4839728,chr3R_4839215_4839799,chr3R_4839215_4839889,chr3R_4839215_4840394;chr3R_4839215_4839851;chr3R_4839215_4839300;chr3R_4839215_4840589,chr3R_4839215_4840474;chr3R_4839215_4839966 chr3R_4839215_4839561 chr3R_4839852_4839944;chr3R_4839301_4839365;chr3R_4840590_4840610;chr3R_4839967_4840095 chr3R_4839562_4839754 chr3R_4839038_4839214 25.00 25.00 29.17 22.00 20.00 26.92 26.32 24.56 21.43 27.78 12.90 25.00 20.69 21.21 25.00 29.17 20.00 23.08 28.57 14.29 19.23 23.81 30.00 36.00 27.78 14.29 26.19 22.22 26.67 16.13 25.64 19.05 22.45 27.78 36.67 27.59 21.95 28.57 29.41 18.18 34.48 20.55 18.75 12.20 29.03 31.11 16.13 25.64 23.08 22.50 29.41 21.21 30.77 26.67 21.05 20.69 28.95 32.81 K alternative_first_exon Spec2 chr3R - chr3R_1443372_1443441;chr3R_1443372_1449496 chr3R_1443372_1444200 chr3R_1449497_1449810 chr3R_1444201_1444591 chr3R_1442368_1443371 92.86 96.88 95.00 84.62 88.89 95.45 90.00 86.96 95.65 87.10 77.27 88.89 90.91 93.33 95.45 92.86 82.35 86.36 94.44 97.50 88.89 91.89 93.94 95.00 92.00 90.00 82.50 92.31 96.30 94.44 92.86 94.74 95.83 96.00 90.32 93.94 91.94 94.44 96.15 89.47 93.10 93.33 87.50 93.10 95.24 95.00 91.43 86.36 90.00 94.44 97.06 86.96 96.67 90.91 93.10 92.59 92.59 94.12 K alternative_first_exon CG13800 chr3L + chr3L_2388782_2402554 chr3L_2400617_2402554 chr3L_2388078_2388781 chr3L_2400509_2400616 chr3L_2402555_2408752 85.71 NA NA 66.67 80.00 NA 80.00 60.00 80.00 85.71 NA 57.14 NA 66.67 NA 60.00 NA NA 66.67 60.00 NA 88.89 76.92 66.67 87.50 NA 71.43 85.71 90.00 85.71 NA NA 90.00 57.14 NA NA 92.31 88.89 87.50 75.00 NA 87.50 NA 87.50 NA 100.00 NA 92.86 66.67 85.71 85.71 92.31 NA NA NA NA NA 88.89 K alternative_first_exon Sclp chrX - chrX_11816407_11818190 chrX_11816407_11816620 chrX_11818191_11818695 chrX_11816621_11816793 chrX_11816263_11816406 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 96.43 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 92.86 100.00 100.00 100.00 100.00 100.00 91.67 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.74 100.00 100.00 100.00 100.00 94.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_first_exon CG17734 chr3R - chr3R_7068286_7069503 chr3R_7068286_7068545 chr3R_7069504_7069700 chr3R_7068546_7068735 chr3R_7067930_7068285 99.46 99.47 100.00 98.01 100.00 99.22 98.67 99.46 100.00 98.54 99.21 99.19 98.72 100.00 99.35 99.21 99.03 100.00 100.00 100.00 100.00 99.44 99.53 99.60 99.27 96.90 99.43 99.25 99.34 99.43 99.27 98.97 100.00 99.51 99.31 98.70 99.59 99.49 100.00 99.10 98.02 99.62 99.07 99.42 99.66 99.68 100.00 100.00 100.00 98.79 100.00 99.29 100.00 100.00 99.40 99.62 99.60 99.66 K alternative_first_exon lig chr2R + chr2R_3955788_3957375,chr2R_3956442_3957375,chr2R_3956067_3957375;chr2R_3956340_3957375;chr2R_3955517_3957375,chr2R_3955586_3957375,chr2R_3955872_3957375 chr2R_3957318_3957375 chr2R_3956281_3956339;chr2R_3955486_3955516 chr2R_3957252_3957317 chr2R_3957376_3957784 0.00 0.00 0.00 1.45 2.00 0.00 2.33 0.00 0.79 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.41 NA NA NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 5.26 NA 0.00 NA NA 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 NA NA NA 0.00 NA 0.00 NA NA 0.00 K alternative_first_exon Pi4KIIalpha chr3R - chr3R_1385916_1385973,chr3R_1385916_1386262;chr3R_1385916_1387988 chr3R_1385916_1386498 chr3R_1387989_1388616 chr3R_1386499_1387088 chr3R_1385797_1385915 5.97 4.94 5.26 5.68 4.76 5.97 9.65 6.38 5.13 5.88 8.93 6.35 4.35 3.70 5.48 5.56 4.17 3.70 6.45 4.58 3.45 8.40 7.69 8.20 7.14 8.96 8.04 16.52 11.76 7.41 10.81 7.81 8.21 5.77 7.32 10.47 5.19 5.83 6.57 5.76 6.67 4.64 5.88 7.77 5.95 7.37 5.33 6.67 4.55 10.48 6.25 5.88 5.06 5.00 5.63 6.58 6.38 5.26 K alternative_first_exon cnc chr3R - chr3R_19014852_19016744,chr3R_19014852_19016561;chr3R_19014852_19016068 chr3R_19014852_19017417 chr3R_19016745_19016842;chr3R_19016069_19016141 chr3R_19017418_19017505 chr3R_19013599_19014851 73.33 68.18 70.00 76.92 86.67 56.25 75.76 75.86 80.00 88.89 72.73 67.65 55.56 41.67 75.00 50.00 75.00 75.00 60.00 60.42 64.29 91.23 84.62 78.57 77.78 83.33 71.43 87.10 82.61 81.82 70.37 38.46 88.00 59.38 68.75 80.00 87.10 82.14 84.38 80.43 73.33 79.41 68.42 76.47 75.00 54.55 66.67 86.96 67.50 72.22 59.26 70.59 75.00 42.86 72.22 66.67 57.89 56.00 K alternative_first_exon dpp chr2L + chr2L_2433918_2455056;chr2L_2429051_2455056;chr2L_2454909_2455056;chr2L_2452415_2455056 chr2L_2450326_2455056 chr2L_2428454_2429050;chr2L_2454739_2454908;chr2L_2451007_2452414 chr2L_2449061_2450325 chr2L_2455057_2455938 16.67 20.00 16.67 10.00 33.33 20.00 22.22 14.29 16.67 0.00 25.00 25.00 12.50 16.67 20.00 22.22 25.00 16.67 20.00 18.18 25.00 11.11 12.50 0.00 25.00 20.00 22.22 4.55 10.00 14.29 20.00 0.00 12.50 12.50 25.00 14.29 25.00 0.00 0.00 12.50 16.67 22.22 25.00 0.00 0.00 20.00 0.00 0.00 16.67 0.00 20.00 25.00 0.00 NA 20.00 0.00 11.11 0.00 K alternative_first_exon CG10365 chr3R + chr3R_19549425_19554388;chr3R_19549381_19554388,chr3R_19549452_19554388 chr3R_19554263_19554388 chr3R_19549086_19549380 chr3R_19554123_19554262 chr3R_19554389_19554881 20.00 13.95 18.52 13.70 15.62 11.43 12.90 25.33 23.08 35.14 25.49 10.84 30.77 17.50 11.76 19.67 14.89 32.73 17.74 21.98 18.60 25.81 17.86 11.32 14.71 20.34 16.67 16.67 25.71 24.07 15.38 30.77 26.56 20.00 20.00 24.24 23.53 15.38 14.58 34.67 21.57 15.38 16.22 24.07 29.82 22.58 27.08 32.94 18.45 24.49 21.74 13.16 39.13 25.58 18.46 18.00 39.13 41.18 K alternative_first_exon Aats-thr chr2L + chr2L_12104145_12104491;chr2L_12103835_12104491,chr2L_12104057_12104491 chr2L_12104383_12104491 chr2L_12103786_12103834 chr2L_12104283_12104382 chr2L_12104492_12104552 6.54 5.83 5.23 5.91 5.48 7.30 6.71 5.73 4.51 11.11 5.17 6.95 5.92 5.15 6.84 5.88 7.19 3.18 6.71 5.06 4.52 6.55 11.11 11.70 10.14 8.43 11.63 10.46 6.45 7.53 9.35 4.40 3.98 4.94 6.94 5.88 7.98 10.78 8.87 8.38 6.29 6.15 4.65 8.63 5.62 5.62 6.93 3.77 6.54 10.31 11.30 8.60 4.55 10.26 3.96 10.84 2.15 1.49 K alternative_first_exon neur chr3R - chr3R_4849568_4864876 chr3R_4849568_4858900 chr3R_4864877_4865189 chr3R_4858901_4859449 chr3R_4847826_4849567 50.00 52.63 52.00 40.00 52.63 54.55 42.86 41.94 51.02 56.52 53.33 50.00 55.00 47.37 50.00 41.03 50.00 50.00 50.00 43.18 50.00 66.67 60.00 52.38 37.50 44.44 40.91 37.50 56.25 46.67 33.33 42.86 60.00 43.24 47.37 56.25 52.00 60.00 51.85 60.71 42.86 44.44 45.45 50.00 45.45 46.67 50.00 40.91 52.17 64.29 52.38 50.00 55.56 60.00 44.83 50.00 40.00 38.46 K alternative_first_exon bbx,waw chrX + chrX_21236287_21240718 chrX_21239153_21240718 chrX_21234687_21236286 chrX_21239063_21239152 chrX_21240719_21241749 4.76 6.67 3.90 4.49 9.86 6.25 5.21 4.63 5.45 2.33 1.79 3.08 6.90 5.00 5.33 4.76 5.26 2.94 6.35 3.25 4.76 9.30 2.52 2.20 3.17 6.67 4.21 2.53 1.82 5.80 2.55 6.25 3.85 3.74 3.51 6.06 4.69 1.20 4.50 5.61 8.33 5.63 5.56 3.90 7.50 1.82 4.17 6.15 4.64 5.66 0.97 5.00 7.55 4.88 2.50 1.89 7.02 7.84 K alternative_first_exon cenG1A chr2L + chr2L_13836433_13891299 chr2L_13879707_13891299 chr2L_13835567_13836432 chr2L_13878965_13879706 chr2L_13891300_13891532 34.21 29.17 35.56 49.30 31.43 28.95 61.54 32.43 33.33 43.18 33.33 32.93 26.47 28.57 30.61 32.79 28.95 34.21 35.85 30.85 36.36 53.85 40.74 38.89 44.44 37.84 41.67 78.72 56.92 31.75 52.54 34.62 39.47 37.04 41.67 49.15 22.08 35.85 30.19 34.74 44.74 31.52 33.33 49.23 32.43 39.58 33.33 29.07 30.59 60.42 36.07 43.59 17.39 32.00 30.19 32.14 30.00 20.51 K alternative_first_exon Bsg chr2L + chr2L_8088371_8089184,chr2L_8084059_8089184,chr2L_8083458_8089184,chr2L_8083687_8089184,chr2L_8083588_8089184,chr2L_8088517_8089184;chr2L_8083522_8089184,chr2L_8083637_8089184 chr2L_8088454_8089184 chr2L_8083422_8083521 chr2L_8088306_8088453 chr2L_8089185_8089736 30.00 35.71 29.73 22.22 NA 27.78 21.67 22.95 24.59 12.50 22.22 36.54 28.21 32.26 34.78 29.70 14.29 25.00 25.00 49.09 37.50 14.29 32.00 54.55 43.75 28.57 38.46 NA 15.38 13.33 30.56 18.75 15.38 29.85 54.55 42.86 NA NA 30.00 33.33 22.58 34.62 26.47 35.00 21.43 34.62 30.00 9.62 41.67 50.00 44.44 37.50 66.67 37.50 26.47 50.00 50.00 15.38 K alternative_first_exon Den1 chr2R + chr2R_8225547_8226037 chr2R_8225954_8226037 chr2R_8225307_8225546 chr2R_8225805_8225953 chr2R_8226038_8227049 0.00 0.00 6.25 0.00 0.00 0.00 0.00 3.57 2.78 10.00 10.00 0.00 0.00 5.88 4.55 3.70 0.00 0.00 4.76 0.00 0.00 6.25 4.76 0.00 0.00 0.00 0.00 9.09 6.25 0.00 1.64 0.00 0.00 3.85 0.00 0.00 0.00 7.69 4.55 0.00 4.17 2.86 0.00 7.69 0.00 3.45 0.00 0.00 3.03 0.00 0.00 0.00 0.00 4.76 5.00 3.85 3.45 2.78 K alternative_first_exon Nc73EF chr3L + chr3L_16952138_16952198,chr3L_16950952_16952198,chr3L_16950606_16952198;chr3L_16948643_16952198,chr3L_16948692_16952198;chr3L_16950615_16952198,chr3L_16950628_16952198 chr3L_16948914_16952198 chr3L_16948605_16948642;chr3L_16950542_16950614 chr3L_16948864_16948913 chr3L_16952199_16952316 0.00 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 2.38 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 4.55 4.55 0.00 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon TRAM chrX + chrX_829418_830362;chrX_829743_830362,chrX_829872_830362 chrX_830294_830362 chrX_829343_829742 chrX_829891_830293 chrX_830363_831855 12.00 11.27 13.43 13.16 8.77 12.90 8.96 9.76 9.92 20.00 10.20 9.68 9.80 12.96 12.00 12.50 11.76 11.67 8.20 12.00 10.91 19.32 11.83 13.64 12.12 6.90 9.64 11.69 13.51 12.16 11.76 15.28 15.08 12.22 12.68 10.26 14.85 15.94 13.73 10.68 12.50 13.28 8.16 9.09 12.38 14.14 12.00 13.04 11.67 14.71 13.75 16.00 11.11 13.04 11.11 13.85 10.89 10.14 K alternative_first_exon CG12207 chr3R + chr3R_10116543_10124511 chr3R_10124270_10124511 chr3R_10116452_10116542 chr3R_10123963_10124269 chr3R_10124512_10124709 83.33 88.00 85.71 78.57 82.35 82.35 80.00 67.65 76.19 72.22 73.33 89.47 78.95 72.22 73.08 77.78 81.25 84.21 77.27 85.71 85.71 78.79 92.11 88.89 81.82 77.27 75.00 88.46 91.67 82.61 70.37 82.61 85.29 74.29 77.27 89.29 85.71 81.48 85.00 83.67 85.71 82.93 80.00 100.00 84.38 92.59 88.24 88.89 77.50 82.14 89.47 91.30 94.12 90.48 83.33 90.91 95.24 84.62 K alternative_first_exon CG31919,CG33995 chr2L + chr2L_5043384_5045821;chr2L_5044690_5045821 chr2L_5045484_5045821 chr2L_5043269_5043383;chr2L_5044307_5044689 chr2L_5045398_5045483 chr2L_5045822_5045925 3.37 2.33 1.92 2.94 2.08 2.56 0.87 1.05 2.36 3.33 5.26 0.88 0.00 1.75 4.29 3.45 1.89 2.27 5.36 2.70 6.25 3.85 8.82 1.85 7.50 3.33 4.05 1.61 10.26 8.11 2.80 10.34 7.32 3.37 5.56 5.13 5.71 4.55 4.41 2.11 4.35 1.90 8.51 6.45 0.00 4.44 8.11 8.70 1.72 1.96 6.12 2.38 3.70 0.00 2.86 4.88 2.27 12.90 K alternative_first_exon CG31886 chr2L - chr2L_8955587_8958877;chr2L_8955587_8957517 chr2L_8955587_8955681 chr2L_8957518_8958106 chr2L_8955682_8955807 chr2L_8953481_8955586 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.76 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.45 0.00 0.00 0.00 0.00 0.00 8.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon wkd chr3R + chr3R_7407837_7409035;chr3R_7407562_7409035 chr3R_7408707_7409035 chr3R_7407301_7407561 chr3R_7408649_7408706 chr3R_7409036_7409278 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.23 0.00 0.00 0.00 2.13 0.00 0.00 3.45 0.00 0.00 0.00 0.00 K alternative_first_exon aralar1 chr3R - chr3R_26275682_26281372;chr3R_26275682_26279149 chr3R_26275682_26275950 chr3R_26279150_26279487 chr3R_26275951_26276128 chr3R_26275529_26275681 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_first_exon orb2 chr3L - chr3L_8942860_8947477,chr3L_8942860_8947032 chr3L_8942860_8945918 chr3L_8947478_8947547 chr3L_8945919_8946333 chr3L_8942757_8942859 59.38 51.61 60.00 65.52 52.63 60.00 68.09 60.53 58.21 51.85 50.00 52.94 65.00 60.00 45.95 59.46 57.58 57.89 71.43 53.33 55.56 64.71 55.36 62.50 69.23 60.87 65.91 69.23 58.97 62.86 59.38 66.67 52.94 60.98 66.67 67.50 40.74 51.52 45.45 60.71 60.61 58.82 57.89 58.33 63.16 61.90 56.67 52.38 57.41 68.18 59.09 54.84 59.09 59.09 62.50 50.00 62.50 63.89 K alternative_first_exon CG17838 chr3R + chr3R_16609303_16617466;chr3R_16598605_16617466;chr3R_16616055_16617466 chr3R_16606550_16617466 chr3R_16608705_16609302;chr3R_16598518_16598604;chr3R_16615708_16616054 chr3R_16605654_16606549 chr3R_16617467_16617585 69.23 65.79 73.47 74.16 72.22 73.81 68.97 73.63 73.33 82.05 67.57 75.26 75.00 50.00 71.43 70.93 69.23 70.00 70.21 73.64 72.97 73.91 68.49 65.12 69.23 71.43 70.73 76.19 55.17 72.22 75.00 44.44 63.49 71.26 67.57 67.57 71.21 68.42 68.09 62.07 40.00 73.68 70.27 65.31 27.78 37.50 40.00 56.45 69.00 47.06 72.34 66.67 56.52 31.58 71.15 38.10 35.29 40.62 K alternative_first_exon Pfrx chrX + chrX_19400112_19400518;chrX_19389585_19400518;chrX_19398571_19400518;chrX_19390821_19400518;chrX_19400271_19400518 chrX_19392914_19400518 chrX_19389538_19389584;chrX_19398456_19398570;chrX_19390713_19390820;chrX_19399962_19400270 chrX_19392406_19392913 chrX_19400519_19402937 50.00 NA 25.00 25.00 NA NA 50.00 57.14 53.85 42.86 NA 75.00 NA 40.00 50.00 50.00 NA NA 50.00 44.44 NA 50.00 66.67 40.00 NA NA 33.33 100.00 NA NA NA NA 42.86 50.00 40.00 40.00 100.00 50.00 44.44 50.00 NA 33.33 100.00 75.00 60.00 NA 85.71 60.00 50.00 57.14 60.00 80.00 71.43 75.00 60.00 33.33 NA 80.00 K alternative_first_exon tara chr3R + chr3R_12052162_12082499 chr3R_12069052_12082499 chr3R_12051371_12052161 chr3R_12068541_12069051 chr3R_12082500_12085988 100.00 100.00 100.00 92.31 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 N alternative_first_exon Tpi chr3R - chr3R_25959817_25959887;chr3R_25959817_25960000 chr3R_25959817_25959972 chr3R_25960001_25960321 chr3R_25959973_25960000 chr3R_25959232_25959816 99.40 100.00 99.10 99.17 100.00 100.00 99.34 98.94 99.00 97.22 99.08 99.44 100.00 98.90 100.00 100.00 100.00 100.00 100.00 99.55 99.06 99.06 96.88 100.00 NA 100.00 100.00 98.46 83.87 97.73 99.13 98.78 96.83 99.12 100.00 100.00 100.00 100.00 100.00 98.65 100.00 99.54 100.00 97.83 98.21 97.89 100.00 96.92 99.36 100.00 100.00 100.00 97.96 100.00 99.27 100.00 97.87 95.83 K alternative_first_exon PGRP-LB chr3R - chr3R_7279543_7279946,chr3R_7279543_7286168;chr3R_7279543_7283307 chr3R_7279543_7279803,chr3R_7279543_7279742 chr3R_7283308_7283742 chr3R_7279804_7280051 chr3R_7279174_7279542 13.39 0.00 20.00 11.11 NA NA 0.00 16.67 0.00 NA NA 14.29 0.00 NA 14.29 0.00 NA NA 0.00 15.38 NA NA 20.00 20.00 NA NA 0.00 NA NA NA NA NA 20.00 12.50 NA NA 16.67 NA NA 25.00 NA 16.67 NA NA 33.33 NA NA 16.67 9.09 0.00 0.00 NA 0.00 0.00 0.00 NA 20.00 22.22 K alternative_first_exon tlk chrX + chrX_3656891_3675687,chrX_3634238_3675687,chrX_3674212_3675687,chrX_3618905_3675687;chrX_3615681_3675687;chrX_3667068_3675687;chrX_3670471_3675687,chrX_3671394_3675687 chrX_3674723_3675687 chrX_3615409_3615680;chrX_3666673_3667067;chrX_3670092_3670470 chrX_3674176_3674722 chrX_3675688_3677592 20.69 25.93 18.75 23.81 19.05 28.57 23.81 22.95 21.79 14.29 23.08 26.79 19.35 21.43 16.13 29.82 18.52 14.81 18.92 21.15 25.00 16.67 21.74 20.00 12.00 20.69 23.33 22.22 17.24 21.05 20.00 22.22 20.00 23.73 21.88 12.50 20.51 14.29 15.15 22.22 12.50 15.62 28.00 20.00 16.67 13.64 25.00 11.32 21.67 17.65 23.81 12.90 11.11 25.00 21.62 25.00 30.77 13.04 K alternative_first_exon Taz chr2R - chr2R_8642256_8643440;chr2R_8642256_8642580 chr2R_8642256_8642330 chr2R_8643441_8643915;chr2R_8642581_8642908 chr2R_8642331_8642400 chr2R_8641913_8642255 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon fru chr3R - chr3R_14261513_14303785,chr3R_14261513_14339172;chr3R_14261513_14340773;chr3R_14261513_14272422 chr3R_14261513_14288988 chr3R_14340774_14341065;chr3R_14272423_14273051 chr3R_14288989_14289003 chr3R_14261365_14261512 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 7.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon CG42762,CG42763,CG8552 chr2L - chr2L_8140779_8159218 chr2L_8140779_8156520 chr2L_8159219_8159575 chr2L_8156521_8156750 chr2L_8136880_8140778 12.35 11.86 16.67 11.46 15.69 15.69 22.34 18.69 18.88 6.25 12.28 14.88 12.07 17.91 9.59 13.27 11.67 19.23 15.28 14.41 9.62 12.35 12.04 7.14 13.11 17.46 10.96 5.36 7.41 12.70 15.87 10.00 5.00 17.86 10.17 11.94 8.24 9.30 9.46 8.16 13.33 13.14 11.76 10.00 5.26 16.28 15.15 7.27 17.65 11.76 14.89 15.91 6.45 14.29 15.12 14.29 20.00 11.43 K alternative_first_exon msi chr3R + chr3R_21344160_21344982,chr3R_21341963_21344982;chr3R_21342072_21344982 chr3R_21344195_21344982 chr3R_21341842_21342071 chr3R_21344045_21344194 chr3R_21344983_21345451 11.29 9.09 9.09 7.58 18.75 6.06 11.29 9.86 10.53 20.00 11.54 13.04 12.12 16.28 6.67 14.94 17.86 6.45 17.65 13.89 10.71 18.75 7.69 7.50 21.43 16.67 8.33 22.22 11.11 12.00 15.91 6.67 9.09 13.85 6.06 4.55 12.50 12.50 11.54 16.28 10.00 13.43 15.15 4.76 12.50 14.29 11.11 17.86 10.00 8.33 6.90 8.00 11.11 6.67 15.22 5.56 11.76 5.88 K alternative_first_exon Gp150 chr2R + chr2R_18206107_18212679;chr2R_18205243_18212679,chr2R_18205460_18212679 chr2R_18210531_18212679 chr2R_18205184_18205242 chr2R_18210408_18210530 chr2R_18212680_18213232 0.00 0.95 0.00 0.00 0.00 0.00 0.00 0.45 0.41 0.00 0.00 0.68 0.00 1.37 0.00 0.41 0.91 0.00 0.60 0.32 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon NTPase chr2L - chr2L_2882834_2884356,chr2L_2882834_2884796;chr2L_2882834_2885632;chr2L_2882834_2884992 chr2L_2882834_2882919 chr2L_2885633_2885850;chr2L_2884993_2885208 chr2L_2882920_2883113 chr2L_2882692_2882833 2.94 2.16 2.55 5.95 2.70 3.82 2.06 3.24 2.68 2.99 3.36 2.14 6.25 3.39 3.40 3.12 3.57 3.85 3.73 2.73 4.00 4.22 2.20 2.04 1.86 2.94 2.20 2.93 7.54 4.55 1.29 1.67 4.74 2.54 1.46 3.85 4.91 1.32 1.28 3.80 2.60 1.94 2.97 1.95 3.16 2.37 2.29 3.07 3.46 2.47 2.66 2.46 4.76 0.91 3.40 1.34 4.65 6.16 K alternative_first_exon ImpL2 chr3L - chr3L_4225707_4225972,chr3L_4225707_4226245,chr3L_4225707_4226564;chr3L_4225707_4225883;chr3L_4225707_4235902 chr3L_4225707_4226573 chr3L_4225884_4225950;chr3L_4235903_4236147 chr3L_4226574_4227270 chr3L_4224927_4225706 98.01 98.05 98.56 99.29 97.73 97.97 97.28 97.26 97.43 98.78 97.70 97.30 97.35 97.50 98.68 98.10 98.15 98.53 98.62 97.88 97.87 97.75 98.32 98.00 97.78 97.93 97.62 98.14 96.63 98.10 97.89 97.49 98.71 98.01 99.18 98.61 97.67 98.01 98.19 99.05 98.13 98.18 97.90 98.77 98.76 98.62 97.16 98.65 98.49 97.06 97.75 98.37 97.93 98.18 98.46 97.75 97.47 98.23 K alternative_first_exon apt chr2R + chr2R_19484322_19484414,chr2R_19453742_19484414;chr2R_19468992_19484414;chr2R_19471499_19484414;chr2R_19452574_19484414 chr2R_19455916_19484414 chr2R_19468615_19468991;chr2R_19471332_19471498;chr2R_19452420_19452573 chr2R_19455581_19455915 chr2R_19484415_19484520 1.64 2.94 2.56 3.70 3.85 0.00 1.79 1.25 1.01 0.00 0.00 1.30 0.00 4.00 0.00 1.23 2.44 3.33 1.64 1.41 0.00 4.17 2.70 3.70 0.00 2.38 0.00 7.14 0.00 3.70 0.00 5.56 2.94 1.19 0.00 4.76 4.35 0.00 0.00 0.00 0.00 2.78 2.17 0.00 0.00 4.17 5.56 0.00 2.17 4.17 2.33 3.85 0.00 0.00 1.75 0.00 0.00 1.96 N alternative_first_exon Pde8 chr2R + chr2R_19547435_19547916;chr2R_19545152_19547916;chr2R_19547223_19547916 chr2R_19546851_19547916,chr2R_19546876_19547916 chr2R_19545099_19545151;chr2R_19547053_19547222 chr2R_19546810_19546850 chr2R_19547917_19548056 0.00 6.67 0.00 0.00 0.00 0.00 0.00 3.45 2.22 0.00 0.00 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 2.00 3.70 0.00 0.00 0.00 3.12 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 2.70 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 3.12 NA 0.00 0.00 18.18 0.00 0.00 10.00 0.00 7.14 K alternative_first_exon Taz chr2R - chr2R_8642256_8643440;chr2R_8642256_8642330 chr2R_8642256_8642580 chr2R_8643441_8643915;chr2R_8642331_8642400 chr2R_8642581_8642908 chr2R_8641913_8642255 0.00 0.00 0.00 0.00 4.76 5.00 0.00 3.12 1.89 0.00 0.00 2.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon dpp chr2L + chr2L_2433918_2455056;chr2L_2429051_2455056;chr2L_2454909_2455056;chr2L_2450326_2455056 chr2L_2452415_2455056 chr2L_2428454_2429050;chr2L_2454739_2454908;chr2L_2449061_2450325 chr2L_2451007_2452414 chr2L_2455057_2455938 25.00 20.00 16.67 20.00 33.33 20.00 22.22 14.29 25.00 25.00 25.00 12.50 12.50 16.67 20.00 11.11 25.00 16.67 20.00 9.09 25.00 55.56 37.50 25.00 50.00 20.00 22.22 59.09 50.00 42.86 20.00 50.00 37.50 12.50 25.00 42.86 25.00 25.00 33.33 37.50 50.00 11.11 25.00 60.00 33.33 20.00 33.33 50.00 8.33 28.57 40.00 25.00 33.33 NA 20.00 0.00 11.11 20.00 K alternative_first_exon CG6330 chr3R - chr3R_22777621_22782241 chr3R_22777621_22778725 chr3R_22782242_22782311 chr3R_22778726_22778974 chr3R_22777497_22777620 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_first_exon Megalin chrX - chrX_9366694_9393918 chrX_9366694_9390008 chrX_9393919_9394162 chrX_9390009_9390221 chrX_9366032_9366693 0.00 0.00 NA 0.00 NA NA 0.00 0.00 0.00 0.00 NA 0.00 NA NA 0.00 9.09 NA NA 0.00 0.00 NA NA 0.00 0.00 0.00 NA 0.00 NA NA 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 NA NA NA NA NA 0.00 7.69 NA NA NA 0.00 NA NA NA NA NA K alternative_first_exon CG32626 chrX - chrX_13731791_13733567,chrX_13731791_13733598;chrX_13731791_13739384 chrX_13731791_13731884 chrX_13739385_13739894 chrX_13731885_13732131 chrX_13731646_13731790 1.82 0.85 0.90 3.25 1.19 0.97 0.66 1.68 1.64 2.67 1.03 0.56 2.53 1.18 1.61 1.39 1.19 2.22 2.17 1.97 1.14 1.64 0.50 1.36 2.15 1.19 0.78 2.44 1.98 2.08 1.82 1.82 2.06 1.92 1.96 1.87 0.61 1.45 0.60 2.52 3.28 1.07 2.38 2.27 2.70 0.98 0.82 2.25 1.49 6.21 0.56 1.96 3.85 2.30 2.42 1.89 0.94 2.47 K alternative_first_exon CG4199 chrX - chrX_1965614_1966582;chrX_1965614_1965872;chrX_1965614_1965671 chrX_1965614_1967409,chrX_1965614_1967149 chrX_1965873_1966096;chrX_1965672_1965832 chrX_1967410_1967460 chrX_1965393_1965613 0.38 0.68 0.74 0.00 0.00 0.00 1.37 0.58 0.38 1.18 0.00 0.88 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 1.29 0.45 0.49 0.00 0.76 0.00 0.61 0.00 0.00 1.24 0.00 0.00 0.00 0.74 0.00 0.40 0.65 0.45 1.01 0.85 0.35 1.12 1.08 0.00 0.00 0.00 0.00 0.37 0.63 0.50 0.76 0.64 0.00 0.00 0.67 0.00 0.64 K alternative_first_exon robo chr2R - chr2R_18587540_18587701;chr2R_18587540_18588382 chr2R_18587540_18587595 chr2R_18588383_18588467 chr2R_18587596_18587853 chr2R_18587307_18587539 12.77 11.11 5.26 6.06 8.33 7.69 29.17 3.70 13.64 12.50 11.11 6.25 14.29 6.67 5.88 11.76 14.29 41.18 12.50 6.52 15.38 40.91 15.38 18.18 NA 20.00 22.22 NA 50.00 18.18 13.04 NA 23.08 14.81 NA NA 6.25 10.00 18.18 15.00 NA 9.09 15.38 NA NA NA NA 15.00 6.25 NA 22.22 10.00 NA NA 12.50 NA NA 11.11 K alternative_first_exon CG42321 chr2R - chr2R_9310231_9323707;chr2R_9310231_9311418;chr2R_9310231_9326111 chr2R_9310231_9313017 chr2R_9311419_9312241;chr2R_9326112_9326550 chr2R_9313018_9313744 chr2R_9310107_9310230 27.27 25.00 37.50 13.33 42.86 20.00 25.00 17.65 23.08 33.33 28.57 23.81 14.29 20.00 22.22 7.69 33.33 25.00 23.08 29.41 28.57 75.00 25.00 22.22 25.00 37.50 27.27 40.00 37.50 25.00 30.77 33.33 33.33 27.78 42.86 33.33 27.27 12.50 30.00 25.00 33.33 27.27 20.00 14.29 66.67 40.00 33.33 28.57 27.78 33.33 21.43 25.00 20.00 25.00 33.33 20.00 25.00 20.00 K alternative_first_exon CG42321 chr2R - chr2R_9310231_9323707;chr2R_9310231_9313017;chr2R_9310231_9326111 chr2R_9310231_9311418 chr2R_9313018_9313744;chr2R_9326112_9326550 chr2R_9311419_9312241 chr2R_9310107_9310230 6.67 0.00 12.50 6.67 0.00 10.00 6.25 11.76 11.54 0.00 14.29 9.52 14.29 10.00 11.11 7.69 11.11 12.50 7.69 5.88 0.00 8.33 8.33 0.00 0.00 12.50 0.00 0.00 0.00 12.50 7.69 0.00 0.00 11.11 14.29 0.00 9.09 0.00 10.00 8.33 33.33 4.55 10.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 7.14 0.00 0.00 0.00 11.11 0.00 0.00 20.00 K alternative_first_exon apt chr2R + chr2R_19484322_19484414,chr2R_19453742_19484414;chr2R_19471499_19484414;chr2R_19455916_19484414;chr2R_19452574_19484414 chr2R_19468992_19484414 chr2R_19471332_19471498;chr2R_19455581_19455915;chr2R_19452420_19452573 chr2R_19468615_19468991 chr2R_19484415_19484520 88.89 88.24 87.18 87.04 84.62 87.50 91.07 90.00 86.87 85.71 85.71 84.42 76.92 80.00 82.35 87.65 90.24 83.33 86.89 85.92 88.89 95.83 89.19 88.89 94.74 85.71 93.94 85.71 95.00 92.59 88.10 94.44 91.18 86.90 95.83 85.71 86.96 86.67 94.74 92.31 94.44 90.28 82.61 89.66 100.00 91.67 88.89 93.88 88.04 91.67 86.05 88.46 90.91 91.67 87.72 100.00 95.65 92.16 K alternative_first_exon CR42549,mura chr3R - chr3R_5375533_5377037;chr3R_5375533_5377422 chr3R_5375533_5377487 chr3R_5377038_5377079;chr3R_5377423_5377470 chr3R_5377488_5377528 chr3R_5375500_5375532 92.59 NA NA 91.67 NA NA 94.12 95.24 100.00 NA NA 90.91 92.86 NA NA NA NA NA NA NA NA 80.00 92.86 83.33 NA NA NA NA NA NA NA NA NA 85.71 NA NA 100.00 NA 84.62 100.00 NA 80.95 NA 100.00 NA NA NA NA 94.12 92.31 NA 75.00 NA NA 100.00 84.62 NA NA K alternative_first_exon CR42491,RpL22 chrX - chrX_657025_658334 chrX_657025_657473 chrX_658335_658955 chrX_657474_657843 chrX_656648_657024 2.37 2.38 2.35 2.04 2.30 1.89 2.02 2.03 2.32 2.72 1.78 1.51 2.37 2.78 1.88 2.95 1.91 2.62 1.63 2.52 1.92 2.04 3.40 2.84 3.00 1.87 3.10 4.51 1.44 2.51 1.87 3.07 3.59 2.33 2.73 2.94 2.55 4.03 3.11 2.75 2.08 1.87 1.77 1.85 1.70 2.80 2.30 1.89 3.58 8.00 3.54 3.97 2.45 2.40 2.15 3.14 2.34 1.97 K alternative_first_exon CG2017 chr3R - chr3R_1686127_1687510,chr3R_1686127_1688016;chr3R_1686127_1686928,chr3R_1686127_1686711;chr3R_1686127_1687468 chr3R_1686127_1688092,chr3R_1686127_1687891 chr3R_1686929_1687019;chr3R_1687469_1687624 chr3R_1688093_1688116 chr3R_1685454_1686126 52.08 56.86 55.56 42.59 59.57 45.71 52.94 48.53 55.56 60.00 38.64 52.43 51.28 56.82 47.92 46.81 57.89 44.23 48.15 56.07 44.68 47.01 61.22 61.96 48.39 50.77 57.84 63.06 43.27 59.57 50.00 54.90 52.08 50.00 47.76 56.96 65.89 62.50 59.30 51.49 50.00 57.14 46.15 51.02 49.23 48.96 53.73 38.04 46.48 40.00 51.11 67.65 57.89 55.22 61.11 65.06 78.57 47.22 K alternative_first_exon CG13349 chr2R - chr2R_9847615_9847752;chr2R_9847615_9847823 chr2R_9847615_9847732 chr2R_9847824_9847909 chr2R_9847733_9847817 chr2R_9847073_9847614 98.39 100.00 98.11 100.00 97.87 100.00 98.92 98.06 99.37 95.24 97.73 98.97 98.18 98.00 97.06 98.85 100.00 100.00 98.48 98.33 98.39 100.00 98.70 97.87 97.73 96.61 100.00 100.00 100.00 89.47 96.49 97.22 95.65 97.87 100.00 96.88 100.00 100.00 100.00 91.43 100.00 96.61 98.21 96.15 95.12 96.23 100.00 100.00 98.26 98.96 98.41 100.00 100.00 97.50 96.97 100.00 100.00 87.10 K alternative_first_exon Eb1 chr2R + chr2R_2639219_2640136,chr2R_2637283_2640136;chr2R_2637090_2640136;chr2R_2636895_2640136 chr2R_2639737_2640136 chr2R_2637037_2637089;chr2R_2636697_2636894 chr2R_2639589_2639736 chr2R_2640137_2640289 0.45 1.28 0.71 0.85 1.08 0.00 1.32 0.92 0.38 0.96 0.00 0.00 0.00 0.00 0.00 0.47 1.01 0.88 0.72 0.00 0.00 0.56 0.00 0.00 1.04 0.86 1.23 0.77 1.83 0.00 0.49 0.00 0.00 0.91 0.00 0.00 0.00 0.00 0.74 0.23 0.62 0.34 1.89 0.45 0.63 0.42 0.00 0.58 0.34 0.00 0.65 0.00 0.60 0.00 0.58 0.00 0.55 0.39 K alternative_first_exon CLIP-190 chr2L + chr2L_17385896_17394429;chr2L_17386394_17394429 chr2L_17389531_17394429 chr2L_17385561_17385895;chr2L_17386146_17386393 chr2L_17389341_17389530 chr2L_17394430_17394492 6.67 0.00 7.69 8.57 5.88 0.00 7.14 10.81 0.00 16.67 5.26 4.35 0.00 0.00 8.00 6.25 5.00 5.00 4.76 2.56 0.00 11.11 16.13 11.54 6.25 8.70 3.70 53.33 8.33 11.11 5.26 18.18 8.70 3.03 6.67 12.50 0.00 0.00 0.00 5.88 8.33 4.65 6.25 11.76 0.00 11.11 7.69 9.52 6.67 6.67 2.94 7.14 7.14 0.00 4.17 10.00 22.22 23.53 K alternative_first_exon CG31038 chr3R + chr3R_25705533_25727905 chr3R_25723368_25727905 chr3R_25702805_25705532 chr3R_25723022_25723367 chr3R_25727906_25728953 95.65 97.50 96.67 95.65 96.15 92.86 88.89 95.24 94.55 88.24 94.12 95.35 88.00 92.86 97.22 96.88 95.65 92.86 97.22 97.37 96.43 92.98 93.75 97.30 91.30 96.00 96.30 89.47 97.06 94.74 90.91 93.94 95.74 97.22 97.14 95.83 93.88 96.97 93.44 97.96 91.18 95.45 92.59 96.77 93.62 97.22 93.88 97.92 97.92 98.44 95.56 92.59 95.00 97.06 92.86 97.56 96.67 97.37 K alternative_first_exon CG1607 chr3R + chr3R_27211199_27212797,chr3R_27211341_27212797,chr3R_27208056_27212797,chr3R_27211118_27212797;chr3R_27208058_27212797 chr3R_27210222_27212797 chr3R_27207832_27208057 chr3R_27210122_27210221 chr3R_27212798_27213120 95.24 92.86 93.75 94.74 100.00 91.67 96.88 95.00 97.44 100.00 93.33 92.31 88.89 95.24 95.00 97.83 NA 94.74 72.73 96.67 95.65 97.06 94.44 93.33 NA 94.12 100.00 92.31 100.00 95.45 87.50 100.00 95.00 100.00 91.30 100.00 94.44 NA NA 95.24 100.00 96.77 NA 96.67 NA 95.65 100.00 100.00 96.88 NA 88.89 91.67 88.89 NA 94.12 100.00 92.86 100.00 K alternative_first_exon Cam chr2R + chr2R_8147694_8152247 chr2R_8152181_8152247 chr2R_8147545_8147693 chr2R_8152065_8152180 chr2R_8152248_8152422 0.11 0.00 0.31 0.00 0.21 0.18 0.11 0.10 0.06 0.36 0.00 0.10 0.00 0.00 0.00 0.19 0.20 0.19 0.00 0.07 0.00 0.25 0.00 0.00 0.00 0.19 0.16 0.42 0.00 0.19 0.00 0.00 0.36 0.20 0.38 0.00 0.17 0.24 0.00 0.12 0.00 0.17 0.00 0.00 0.32 0.18 0.00 0.00 0.17 0.20 0.12 0.22 0.19 0.21 0.00 0.18 0.00 0.00 K alternative_first_exon CkIIbeta chrX + chrX_11686701_11687475,chrX_11687161_11687475,chrX_11686779_11687475;chrX_11686720_11687475 chrX_11686948_11687475,chrX_11686979_11687475,chrX_11687025_11687475,chrX_11687313_11687475 chrX_11686569_11686719 None chrX_11687476_11687551 54.69 67.31 61.02 49.54 57.14 54.55 46.74 55.56 48.72 48.15 51.28 58.76 54.55 54.90 49.30 56.12 54.55 50.00 51.90 45.79 55.00 61.22 55.07 51.72 40.00 38.33 62.07 42.86 58.06 69.05 62.86 58.33 63.64 53.54 70.00 55.56 52.08 52.50 50.00 44.74 73.91 52.03 52.38 71.11 68.75 71.43 53.19 78.05 54.69 63.64 51.72 54.72 67.57 44.44 66.67 49.02 50.67 75.64 K alternative_first_exon fs(1)h chrX - chrX_7950171_7950349;chrX_7950171_7953899 chrX_7950171_7950642 chrX_7953900_7954191 chrX_7950643_7950719 chrX_7950000_7950170 1.67 0.00 0.00 2.97 0.00 1.92 0.88 1.48 1.69 5.41 4.08 2.88 1.20 2.30 4.92 1.46 1.89 0.00 1.14 1.46 4.00 6.25 0.00 4.08 2.38 0.00 0.00 2.13 2.17 1.67 0.00 4.76 6.78 1.40 1.89 1.64 0.00 2.63 2.56 0.00 0.00 1.53 1.67 1.67 0.00 2.78 0.00 5.13 1.97 2.86 2.70 0.00 0.00 0.00 3.12 0.00 0.00 2.50 K alternative_first_exon CG5455 chr3R + chr3R_22287697_22292306,chr3R_22287836_22292306;chr3R_22287369_22292306 chr3R_22291374_22292306 chr3R_22287251_22287368 chr3R_22291320_22291373 chr3R_22292307_22292792 0.00 NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 NA NA 0.00 0.00 NA NA 0.00 NA NA 0.00 0.00 11.11 NA NA 0.00 0.00 NA 0.00 NA 11.11 NA NA 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 NA NA NA K alternative_first_exon exba chr3R - chr3R_1426031_1426736 chr3R_1426031_1426209 chr3R_1426737_1426891 chr3R_1426210_1426288 chr3R_1426010_1426030 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA N alternative_first_exon CG32280 chr3L + chr3L_3167902_3167941,chr3L_3165352_3167941,chr3L_3165407_3167941,chr3L_3165390_3167941;chr3L_3165704_3167941;chr3L_3165255_3167941 chr3L_3165222_3167941 chr3L_3165334_3165703;chr3L_3165230_3165254 chr3L_3165182_3165221 chr3L_3167942_3168265 15.00 NA NA NA NA NA NA NA 14.29 28.57 NA 20.00 NA NA NA 14.29 NA NA NA 16.67 NA 33.33 33.33 NA NA NA NA NA 14.29 NA NA NA NA 16.67 NA NA 15.00 NA NA 8.00 NA NA NA NA 12.50 0.00 12.50 4.17 NA 18.18 25.00 NA NA NA NA NA 30.00 0.00 K alternative_first_exon hts chr2R - chr2R_15311303_15312327 chr2R_15311303_15311548 chr2R_15312328_15312454 chr2R_15311549_15311599 chr2R_15311099_15311302 33.33 35.00 21.43 31.25 23.08 26.09 23.33 38.46 30.26 NA 37.04 25.37 42.86 21.05 48.15 45.45 37.93 33.33 41.38 20.00 22.73 31.25 32.00 42.11 58.33 33.33 23.08 NA NA NA 33.33 NA NA 31.71 NA 11.11 23.53 46.15 35.29 23.08 NA 35.85 38.46 15.79 NA NA 45.45 NA 48.00 30.77 25.00 35.00 NA NA 39.39 35.29 33.33 NA K alternative_first_exon CG1516 chr2R - chr2R_5743716_5757801;chr2R_5743716_5747874 chr2R_5743716_5743780 chr2R_5757802_5757853;chr2R_5747875_5748262 chr2R_5743781_5743915 chr2R_5743589_5743715 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 2.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon CG31038 chr3R + chr3R_25705533_25722419 chr3R_25720816_25722419 chr3R_25702805_25705532 chr3R_25720705_25720815 chr3R_25722420_25722951 0.00 0.00 50.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50.00 0.00 K alternative_first_exon spi chr2L - chr2L_19571768_19571881,chr2L_19571768_19572142,chr2L_19571768_19572503,chr2L_19571768_19575517,chr2L_19571768_19577173;chr2L_19571768_19577185;chr2L_19571768_19575534 chr2L_19571768_19572499 chr2L_19577186_19577324;chr2L_19575535_19575587 chr2L_19572500_19572610 chr2L_19571572_19571767 19.32 20.79 19.85 10.36 18.31 18.10 11.06 8.33 12.66 34.78 13.40 15.81 8.33 13.49 14.29 13.31 10.57 21.15 11.60 16.01 20.42 15.28 26.42 31.25 22.00 13.73 18.57 14.81 23.53 25.83 17.84 31.31 39.08 12.27 23.21 14.46 21.35 28.69 23.91 25.29 35.53 18.73 14.93 24.07 34.48 22.49 22.96 43.82 17.05 21.17 25.63 25.25 9.76 19.32 15.66 26.35 10.81 40.91 K alternative_first_exon tomosyn chrX + chrX_12525847_12529764 chrX_12527991_12529764 chrX_12525653_12525846 chrX_12527553_12527990 chrX_12529765_12530316 16.03 25.00 13.33 14.81 22.22 15.38 10.34 14.29 13.64 16.67 15.38 17.86 21.43 13.64 15.00 13.16 23.08 13.33 16.67 18.18 14.29 27.27 9.09 18.18 14.29 13.33 26.67 NA 10.00 30.00 13.64 28.57 25.00 14.81 21.43 14.29 22.22 20.00 16.67 21.05 14.29 14.81 14.29 23.08 NA 22.22 11.11 21.05 16.67 16.67 21.43 11.11 16.67 NA 14.29 12.50 11.11 16.67 K alternative_first_exon CG10320 chr2R + chr2R_17545799_17545855,chr2R_17545686_17545855;chr2R_17545615_17545855 chr2R_17545781_17545855 chr2R_17545580_17545614 chr2R_17545628_17545780 chr2R_17545856_17545985 26.97 NA 27.27 23.81 16.67 15.79 42.86 26.67 27.78 NA 30.77 26.32 NA NA 18.75 21.43 NA 35.00 NA 20.83 23.08 NA 80.00 NA NA 16.67 NA NA NA NA 27.27 NA NA 25.00 NA NA 77.78 NA NA 50.00 NA 16.13 9.09 NA 28.57 80.00 NA NA 30.00 NA NA NA NA NA 4.55 58.33 NA 50.00 K alternative_first_exon capu chr2L - chr2L_3887557_3893261;chr2L_3887557_3889430 chr2L_3887557_3888648 chr2L_3893262_3893604;chr2L_3889431_3890031 chr2L_3888649_3888824 chr2L_3886984_3887556 13.10 19.30 11.76 13.85 13.16 13.95 15.00 17.14 19.53 9.68 13.95 13.98 26.67 13.33 14.81 28.07 18.18 12.07 32.00 16.51 21.28 13.10 13.86 4.65 8.33 23.08 7.50 10.81 8.75 11.54 16.07 11.36 9.68 18.42 7.02 4.92 9.00 7.69 6.12 11.19 8.93 14.42 15.15 22.54 6.67 14.08 8.16 12.28 13.33 6.56 8.51 17.50 5.77 11.11 13.43 10.42 6.38 2.56 N alternative_first_exon Moe chrX - chrX_8774434_8774689,chrX_8774434_8775292,chrX_8774434_8775660,chrX_8774434_8775874;chrX_8774434_8792216;chrX_8774434_8785766,chrX_8774434_8785594;chrX_8774434_8791943,chrX_8774434_8791871 chrX_8774434_8788091 chrX_8792217_8792343;chrX_8785767_8785834;chrX_8791944_8792031 chrX_8788092_8788228 chrX_8774325_8774433 1.66 1.83 1.78 1.32 1.13 2.06 1.19 1.96 1.27 1.13 0.81 2.17 3.40 1.48 1.70 2.83 1.31 1.78 1.56 1.59 1.16 2.20 1.95 3.41 1.23 1.19 2.52 1.46 1.17 1.36 1.95 1.60 1.30 1.78 1.47 2.31 1.04 1.60 1.46 2.08 1.58 1.84 1.99 1.97 0.56 1.88 1.78 1.63 2.16 2.55 2.42 1.96 1.55 4.86 0.98 2.12 1.10 1.66 K alternative_first_exon vir-1 chr2L - chr2L_12404178_12407184 chr2L_12404178_12404435 chr2L_12407185_12407466 chr2L_12404436_12404479 chr2L_12403270_12404177 0.45 0.28 0.72 1.30 0.59 0.58 0.39 1.67 0.51 0.22 0.71 0.52 0.49 0.45 0.60 0.88 1.43 0.58 1.07 0.62 1.01 0.53 0.04 0.03 0.06 0.82 0.00 0.10 0.33 0.25 1.39 0.57 0.31 0.98 0.12 0.12 0.04 0.04 0.00 0.43 0.45 0.96 0.83 0.30 0.53 0.67 0.04 0.82 1.22 0.03 0.04 0.07 0.15 0.04 0.77 0.00 0.00 0.45 K alternative_first_exon Pde8 chr2R + chr2R_19557901_19559498;chr2R_19553559_19559498 chr2R_19556891_19559498 chr2R_19557425_19557900;chr2R_19553474_19553558 chr2R_19556630_19556890 chr2R_19559499_19559611 1.79 0.00 3.23 3.25 1.59 2.20 2.25 0.92 2.82 3.28 3.77 1.85 1.89 2.44 1.12 2.50 1.79 2.90 2.56 2.35 1.75 2.45 1.90 2.33 2.63 2.63 1.36 5.71 2.25 1.55 1.74 1.49 1.19 2.44 0.85 1.89 1.21 0.91 1.62 0.43 1.08 1.63 3.45 2.61 0.78 0.90 1.00 1.73 1.88 3.45 1.36 1.45 1.09 0.00 2.06 1.16 1.10 0.85 K alternative_first_exon CG3714 chr2L - chr2L_4196815_4197951;chr2L_4196815_4197964 chr2L_4196815_4197146 chr2L_4197965_4198058 chr2L_4197147_4197377 chr2L_4196475_4196814 87.50 NA NA NA NA NA 92.59 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 87.50 NA 100.00 66.67 100.00 NA NA 100.00 NA NA NA NA NA 87.50 NA NA NA NA 83.33 NA 71.43 NA NA NA NA NA 75.00 NA NA NA NA NA NA NA NA NA K alternative_first_exon CG33129 chr2L - chr2L_10966410_10967142;chr2L_10966410_10968437;chr2L_10966410_10968133 chr2L_10966410_10966501 chr2L_10968438_10968583;chr2L_10968134_10968206 chr2L_10966502_10966672 chr2L_10965993_10966409 64.67 64.17 56.35 57.21 65.22 64.29 56.96 59.80 66.67 73.81 67.27 70.49 68.47 61.74 65.71 59.67 57.89 66.39 61.64 65.54 69.60 69.70 68.88 57.45 56.82 58.96 50.91 73.11 70.09 66.39 58.64 61.82 54.17 59.11 60.98 62.24 67.06 69.92 54.29 50.36 62.63 61.24 65.79 67.15 63.72 68.26 64.67 68.82 65.78 58.09 59.84 65.35 76.47 64.76 59.64 65.73 73.53 75.44 K alternative_first_exon CG3714 chr2L - chr2L_4196780_4197095,chr2L_4196780_4197306,chr2L_4196780_4197872,chr2L_4196780_4197951;chr2L_4196780_4197964 chr2L_4196780_4197146 chr2L_4197965_4198058 chr2L_4197147_4197377 chr2L_4196475_4196779 69.32 63.41 75.00 68.42 60.71 66.67 81.97 65.06 76.47 64.29 70.00 69.32 75.76 64.71 66.67 62.63 67.50 75.00 67.21 60.29 72.41 68.85 79.71 87.80 82.69 83.33 85.92 84.62 68.09 68.89 75.27 50.00 62.79 68.04 90.48 84.62 75.00 87.50 76.92 67.69 67.35 69.51 61.36 79.10 52.38 68.75 72.00 50.00 66.22 91.38 79.69 75.00 77.78 73.68 65.12 74.19 62.07 26.32 K alternative_first_exon CG4822 chr2L - chr2L_120081_120199;chr2L_120081_121632;chr2L_120081_120167 chr2L_120081_120420 chr2L_121633_121751;chr2L_120168_120364 chr2L_120421_120742 chr2L_119828_120080 41.98 41.38 46.97 42.98 52.27 42.86 38.53 41.79 43.79 32.14 51.22 53.38 25.64 36.23 46.51 33.33 43.86 54.24 37.63 48.12 42.00 18.18 53.33 34.33 40.35 58.93 40.48 35.00 50.00 43.24 49.33 35.29 39.22 37.50 32.76 40.30 55.77 45.10 50.00 40.00 41.03 41.98 41.67 39.47 48.65 42.47 46.43 45.12 36.50 32.08 37.97 34.48 44.83 33.33 50.60 44.19 39.13 43.86 K alternative_first_exon CG17896 chrX - chrX_386662_387420 chrX_386662_386775 chrX_387421_387527 chrX_386776_387056 chrX_384820_386661 5.63 4.88 5.97 7.69 4.55 3.51 4.55 3.82 4.76 5.00 6.06 5.31 6.78 3.57 4.90 10.42 4.55 21.05 4.71 3.50 5.26 31.58 6.17 7.46 10.00 3.66 5.63 4.00 20.59 8.89 13.24 6.67 9.80 5.43 10.53 8.82 4.50 5.63 4.65 7.55 14.81 3.50 6.06 4.38 12.50 7.79 6.94 15.87 3.50 12.20 4.23 7.14 1.54 3.70 4.49 3.85 4.55 7.41 K alternative_first_exon Trf4-1 chrX + chrX_8455293_8457185,chrX_8456196_8457185,chrX_8455902_8457185,chrX_8455795_8457185,chrX_8454992_8457185;chrX_8455225_8457185;chrX_8454847_8457185 chrX_8455100_8457185 chrX_8455113_8455224;chrX_8454668_8454846 chrX_8454960_8455099 chrX_8457186_8457580 8.70 6.45 7.89 6.00 4.76 9.38 4.55 7.55 8.57 17.65 17.39 10.00 13.79 12.90 7.32 5.66 10.71 12.12 10.81 7.55 9.68 22.22 3.03 6.67 4.35 4.17 10.00 21.43 25.00 11.11 6.90 21.43 25.00 7.27 7.41 8.70 4.35 5.26 3.12 11.63 23.08 10.77 6.67 15.00 23.08 9.09 7.41 21.74 8.47 5.88 8.89 5.26 6.25 6.25 5.88 12.50 10.53 25.00 K alternative_first_exon CG2765 chr2R - chr2R_20849271_20850005,chr2R_20849271_20850504;chr2R_20849271_20852094 chr2R_20849271_20849865 chr2R_20852095_20852606 chr2R_20849866_20850004 chr2R_20849129_20849270 1.41 1.25 1.18 1.03 1.03 1.32 1.29 1.35 1.16 2.43 1.41 1.57 1.49 0.95 1.19 1.09 1.43 0.70 0.92 1.06 1.27 1.92 1.37 2.36 2.15 0.91 1.65 4.15 2.48 0.95 0.98 1.60 2.11 1.44 1.41 1.72 2.85 1.82 2.12 2.02 2.54 1.41 1.14 3.01 2.52 1.51 1.28 1.11 1.06 1.24 1.42 1.39 1.44 1.64 1.04 2.59 3.07 2.09 K alternative_first_exon drongo chr2L - chr2L_837379_849898 chr2L_837379_842613 chr2L_849899_851071 chr2L_842614_842691 chr2L_836546_837378 2.02 2.37 3.20 4.84 4.67 0.85 1.92 2.75 4.11 0.62 3.96 2.40 2.78 2.54 2.10 4.70 0.93 3.77 2.38 3.14 2.02 6.20 1.38 1.69 1.71 1.92 1.54 2.64 2.14 1.80 0.76 1.45 0.95 3.33 0.54 0.00 2.92 2.15 2.08 1.58 0.00 3.23 1.92 1.24 0.49 1.23 3.73 0.98 1.88 2.75 2.07 2.76 0.99 1.60 3.47 1.27 0.83 1.02 K alternative_first_exon cact chr2L - chr2L_16325055_16325577,chr2L_16325055_16325587;chr2L_16325055_16326020 chr2L_16325055_16325493 chr2L_16326021_16326101 chr2L_16325494_16325655 chr2L_16324333_16325054 98.33 96.83 100.00 94.90 98.59 97.33 97.65 97.25 98.11 97.50 98.33 96.72 100.00 98.48 98.75 100.00 100.00 98.04 100.00 97.89 98.33 96.34 97.22 98.21 100.00 100.00 100.00 98.33 98.41 98.36 97.83 100.00 98.53 98.43 97.67 100.00 97.14 97.44 98.21 100.00 97.73 99.29 98.28 98.77 98.11 100.00 96.72 97.92 95.68 94.44 98.28 100.00 97.83 100.00 98.90 97.92 100.00 98.91 K alternative_first_exon CG9776 chr3R - chr3R_155971_157268 chr3R_155971_156723 chr3R_157269_157946 chr3R_156724_156768 chr3R_155822_155970 0.00 0.00 1.75 0.00 2.04 0.00 1.18 0.82 0.00 0.00 0.00 0.00 0.00 0.00 1.39 1.28 1.75 1.67 1.41 1.61 2.17 0.00 0.84 0.00 1.89 0.00 0.00 2.27 0.00 0.00 0.92 0.00 0.00 0.87 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.74 0.00 0.00 0.00 1.56 0.00 0.00 0.00 1.45 0.00 1.75 2.63 0.00 0.00 0.00 1.79 1.82 N alternative_first_exon C3G chrX - chrX_6683085_6685800;chrX_6683085_6689481;chrX_6683085_6697139;chrX_6683085_6683744 chrX_6683085_6694082 chrX_6685801_6685924;chrX_6689482_6689611;chrX_6697140_6697579;chrX_6683745_6685194 chrX_6694083_6694724 chrX_6682494_6683084 3.85 0.00 5.00 3.23 0.00 10.00 3.03 0.00 3.92 0.00 7.69 2.04 5.56 0.00 5.26 3.12 0.00 4.55 3.85 3.23 0.00 4.26 3.85 0.00 6.25 6.67 5.56 15.38 7.69 10.00 5.00 0.00 8.33 2.94 0.00 5.88 4.55 0.00 6.25 4.00 10.00 2.70 5.00 5.26 0.00 0.00 12.50 4.00 3.03 0.00 0.00 0.00 10.00 0.00 3.85 0.00 0.00 8.33 K alternative_first_exon Ubc-E2H chrX - chrX_7984181_7984559,chrX_7984181_7984896;chrX_7984181_7987807 chrX_7984181_7985993,chrX_7984181_7985957 chrX_7987808_7988097 chrX_7985994_7986125 chrX_7982035_7984180 25.00 23.33 24.24 24.79 28.57 26.92 28.70 25.58 25.43 19.05 30.16 20.18 20.00 20.29 27.27 23.36 22.95 26.23 23.53 27.50 25.00 46.25 27.42 25.00 23.33 25.76 34.55 37.50 21.74 25.00 22.22 30.00 23.26 24.07 33.33 28.12 28.00 15.38 33.33 24.21 23.08 24.59 20.00 41.54 32.35 24.56 24.44 24.39 23.58 36.73 31.67 28.95 22.22 24.14 25.64 28.57 30.51 21.79 K alternative_first_exon Papss chr3L + chr3L_19838731_19851477 chr3L_19841499_19851477 chr3L_19838397_19838730 chr3L_19841268_19841498 chr3L_19851478_19851592 12.50 10.53 10.00 16.13 7.14 17.65 15.15 23.53 18.37 14.81 11.11 6.25 16.67 20.00 16.00 16.67 18.18 10.00 20.00 12.77 12.50 20.83 11.11 13.04 12.50 13.04 11.11 14.29 0.00 11.76 16.00 7.69 7.69 11.43 23.08 6.25 16.13 15.00 10.53 8.82 10.53 12.77 12.50 36.67 9.52 8.70 14.29 9.68 10.53 9.52 19.23 10.00 5.56 8.33 13.04 13.04 10.71 3.33 K alternative_first_exon Vrp1 chr2R - chr2R_18000094_18000186;chr2R_18000094_18009397 chr2R_18000094_18003669,chr2R_18000094_18003655 chr2R_18000187_18000294;chr2R_18009398_18010042 chr2R_18003670_18003843 chr2R_17999715_18000093 18.52 21.43 17.86 22.45 27.27 25.00 21.62 29.17 28.95 14.29 15.00 28.57 17.39 25.93 26.92 32.56 20.83 15.38 34.29 18.18 28.00 22.58 18.60 16.67 15.00 16.67 10.00 15.38 7.14 13.89 16.13 18.18 10.00 27.66 25.81 14.81 25.00 9.52 18.75 11.32 17.39 22.81 21.74 22.86 18.52 18.52 18.18 10.64 29.82 16.00 26.32 23.08 15.79 13.33 13.79 20.00 17.39 15.00 K alternative_first_exon cnc chr3R - chr3R_19014852_19016744,chr3R_19014852_19016561;chr3R_19014852_19017417 chr3R_19014852_19016068 chr3R_19016745_19016842;chr3R_19017418_19017505 chr3R_19016069_19016141 chr3R_19013599_19014851 0.00 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon wnd chr3L - chr3L_19622854_19627331 chr3L_19622854_19625466 chr3L_19627332_19627563 chr3L_19625467_19626196 chr3L_19622365_19622853 100.00 92.31 100.00 96.30 90.91 100.00 96.67 96.77 97.62 90.00 100.00 100.00 100.00 100.00 95.00 100.00 100.00 100.00 100.00 96.67 90.91 94.12 100.00 100.00 100.00 100.00 94.12 100.00 91.67 100.00 100.00 100.00 92.86 100.00 93.33 92.31 84.62 88.89 92.31 95.65 100.00 96.97 100.00 92.86 83.33 100.00 100.00 100.00 97.06 100.00 94.12 90.91 85.71 100.00 100.00 88.89 100.00 100.00 K alternative_first_exon CG14516 chr3R + chr3R_24964872_24967931,chr3R_24965217_24967931;chr3R_24964486_24967931 chr3R_24964918_24967931 chr3R_24964388_24964485 chr3R_24964619_24964917 chr3R_24967932_24968787 89.44 NA NA 83.33 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 100.00 NA NA 100.00 100.00 100.00 NA NA 100.00 80.00 100.00 83.33 NA NA 87.50 NA NA 100.00 90.00 NA NA 88.89 NA 83.33 NA 100.00 NA 83.33 NA 85.71 NA 86.67 100.00 83.33 NA NA NA NA NA NA K alternative_first_exon siz chr3L + chr3L_21057802_21061813;chr3L_21041894_21061813 chr3L_21028402_21061813 chr3L_21057091_21057801;chr3L_21041326_21041893 chr3L_21027639_21028401 chr3L_21061814_21062365 94.44 100.00 100.00 85.71 100.00 88.89 90.91 81.82 90.00 87.50 100.00 88.24 100.00 87.50 100.00 90.00 100.00 87.50 100.00 93.33 100.00 61.90 94.44 100.00 100.00 100.00 100.00 81.82 87.50 90.00 100.00 100.00 90.91 86.67 87.50 84.62 94.44 100.00 100.00 89.47 87.50 93.33 85.71 93.75 85.71 100.00 100.00 100.00 87.50 90.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 88.89 K alternative_first_exon CanA-14F chrX - chrX_16462310_16480957 chrX_16462310_16480461 chrX_16480958_16481160 chrX_16480462_16480698 chrX_16459506_16462309 2.70 3.57 2.56 1.61 3.23 2.86 2.86 4.69 2.97 0.00 3.70 3.12 0.00 2.70 2.27 1.54 2.94 2.94 2.17 2.47 0.00 3.45 2.33 3.12 0.00 2.86 3.57 0.00 6.67 4.00 1.89 8.33 11.76 1.35 3.70 4.00 0.00 0.00 0.00 4.17 0.00 2.67 2.86 0.00 0.00 3.57 4.17 5.88 1.23 0.00 3.03 3.70 0.00 0.00 2.33 0.00 0.00 7.14 K alternative_first_exon Strn-Mlck chr2R - chr2R_11838972_11839376,chr2R_11838972_11839852;chr2R_11838972_11840340 chr2R_11838972_11839458,chr2R_11838972_11839411 chr2R_11840341_11840725 chr2R_11839459_11839597 chr2R_11838663_11838971 7.36 8.20 5.42 11.05 7.96 8.70 7.98 6.99 6.65 8.91 8.42 9.06 9.20 8.85 8.28 8.33 10.96 9.91 6.35 8.68 9.65 11.32 9.03 8.46 11.81 8.26 4.72 6.06 5.00 2.48 7.59 4.92 3.35 6.12 4.35 6.60 7.22 8.15 7.03 5.63 3.92 8.60 5.95 10.20 5.81 3.10 3.89 9.36 7.91 2.84 5.96 12.63 4.72 2.48 7.36 5.23 2.12 1.93 K alternative_first_exon Ef2b chr2L - chr2L_21681559_21681619,chr2L_21681559_21681649,chr2L_21681559_21681721,chr2L_21681559_21681834;chr2L_21681559_21682038 chr2L_21681559_21681653 chr2L_21682039_21682150 chr2L_21681654_21681701 chr2L_21681344_21681558 0.02 0.00 0.00 0.03 0.05 0.07 0.02 0.03 0.02 0.00 0.00 0.00 0.05 0.06 0.00 0.04 0.05 0.06 0.05 0.00 0.06 0.00 0.02 0.03 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 0.03 0.04 0.07 0.00 0.15 0.00 0.06 0.03 0.10 0.06 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.07 0.04 0.05 0.00 0.00 K alternative_first_exon Sirt4 chrX - chrX_5559520_5559574;chrX_5559520_5559720 chrX_5559520_5559642 chrX_5559721_5560002 chrX_5559643_5559660 chrX_5558661_5559519 0.00 12.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 11.11 NA 0.00 0.00 0.00 0.00 0.00 0.00 6.25 9.09 0.00 0.00 0.00 0.00 NA 0.00 11.11 0.00 0.00 0.00 0.00 0.00 0.00 NA 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon ari-1 chrX - chrX_18031084_18031397,chrX_18031084_18031481,chrX_18031084_18031503,chrX_18031084_18031548,chrX_18031084_18031650;chrX_18031084_18031608 chrX_18031084_18031453 chrX_18031609_18031682 chrX_18031454_18031563 chrX_18030475_18031083 0.00 NA 11.11 0.00 NA NA 9.52 5.26 2.38 0.00 NA 0.00 NA 0.00 0.00 4.55 0.00 9.09 6.67 3.85 0.00 0.00 0.00 NA 11.11 0.00 NA NA 0.00 0.00 0.00 NA 0.00 0.00 NA NA 0.00 NA NA NA NA 5.88 NA 7.14 NA 0.00 NA 0.00 0.00 NA NA NA NA NA 8.33 NA NA 0.00 K alternative_first_exon Myo61F chr3L + chr3L_1324630_1325994;chr3L_1325261_1325994;chr3L_1321181_1325994 chr3L_1318770_1325994 chr3L_1325124_1325260;chr3L_1321029_1321180 chr3L_1318482_1318769 chr3L_1325995_1326139 54.37 59.86 54.37 55.03 58.54 58.78 52.38 45.95 57.95 67.42 56.25 55.34 47.90 47.15 62.13 42.81 60.81 56.20 52.11 52.74 50.78 53.26 53.12 55.68 53.33 59.74 48.43 36.43 60.87 64.91 52.79 59.78 77.24 50.37 46.43 50.81 54.29 54.76 53.28 53.59 65.74 56.80 54.07 59.26 65.48 62.80 42.65 65.62 55.31 36.30 45.76 47.45 54.63 51.39 60.00 46.72 40.22 70.52 K alternative_first_exon CG14438 chrX + chrX_6650734_6654020 chrX_6653928_6654020 chrX_6650355_6650733 chrX_6653770_6653927 chrX_6654021_6654243 66.67 61.54 66.67 50.00 70.00 62.50 64.71 76.19 80.56 62.50 62.50 76.92 70.00 68.75 60.00 72.22 70.00 71.43 71.43 66.67 62.50 46.15 47.37 61.54 66.67 66.67 72.73 30.00 40.00 66.67 56.25 NA 70.00 76.00 75.00 60.00 55.56 62.50 56.25 64.71 NA 73.08 76.92 56.25 NA 66.67 NA 68.75 79.31 NA 57.89 70.00 50.00 NA 61.54 NA NA 66.67 K alternative_first_exon CrebB-17A chrX + chrX_18265216_18266063,chrX_18265982_18266063;chrX_18261213_18266063 chrX_18265640_18266063 chrX_18260960_18261212 chrX_18265436_18265639 chrX_18266064_18266465 71.79 72.50 66.67 60.00 70.00 60.53 62.71 63.77 68.22 80.00 77.78 69.51 70.27 65.85 73.08 59.70 75.61 85.37 62.50 69.41 75.51 72.55 72.73 75.56 70.59 72.00 66.04 75.76 71.79 80.49 63.16 76.00 80.85 63.01 72.97 72.50 70.97 74.47 73.68 76.06 80.00 71.60 71.79 80.49 70.97 66.67 76.32 80.00 69.39 73.91 71.67 82.05 69.23 64.00 61.90 66.67 78.38 77.50 K alternative_first_exon CG31919,CG33995 chr2L + chr2L_5043384_5045821;chr2L_5045484_5045821 chr2L_5044690_5045821 chr2L_5043269_5043383;chr2L_5045398_5045483 chr2L_5044307_5044689 chr2L_5045822_5045925 1.96 0.00 1.92 0.98 0.00 2.56 1.74 1.05 0.79 0.00 0.00 0.88 0.00 1.75 1.43 2.30 1.89 2.27 1.79 1.80 2.08 1.92 2.94 3.70 2.50 1.67 2.70 4.84 2.56 0.00 1.87 3.45 0.00 1.12 2.78 5.13 0.00 2.27 1.47 2.11 4.35 0.95 2.13 1.61 4.00 2.22 2.70 8.70 2.59 1.96 2.04 2.38 0.00 5.26 2.86 2.44 0.00 3.23 K alternative_first_exon CG33181 chrX + chrX_8384049_8406385 chrX_8404738_8406385 chrX_8383867_8384048 chrX_8404258_8404737 chrX_8406386_8406783 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA 100.00 100.00 NA 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 NA NA NA 100.00 100.00 100.00 100.00 K alternative_first_exon Eb1 chr2R + chr2R_2639219_2640136,chr2R_2637283_2640136;chr2R_2639737_2640136;chr2R_2636895_2640136 chr2R_2637090_2640136 chr2R_2639589_2639736;chr2R_2636697_2636894 chr2R_2637037_2637089 chr2R_2640137_2640289 0.72 1.28 0.71 0.00 0.00 2.26 0.66 0.92 1.90 0.00 1.04 0.40 1.33 0.93 0.65 1.40 2.02 0.00 0.72 2.65 1.16 0.56 0.00 0.88 0.00 0.86 1.23 0.77 0.61 0.61 1.48 0.00 1.03 1.36 0.64 0.00 0.00 0.00 0.74 0.23 0.62 1.02 1.89 0.45 0.63 0.42 2.03 0.29 1.01 0.83 0.00 0.00 0.00 1.85 0.58 0.91 1.10 0.78 K alternative_first_exon cher chr3R - chr3R_12920472_12921085;chr3R_12920472_12926709 chr3R_12920472_12923759 chr3R_12921086_12921266;chr3R_12926710_12926800 chr3R_12923760_12924080 chr3R_12920331_12920471 0.26 0.26 0.55 0.18 0.00 0.33 0.38 0.32 0.34 0.51 0.27 0.24 0.43 0.63 0.29 0.37 0.27 0.26 0.00 0.26 0.32 0.42 0.36 0.24 0.37 0.00 0.26 1.11 0.50 0.41 0.26 0.00 0.00 0.17 0.00 0.00 0.00 0.29 0.21 0.22 0.00 0.14 0.37 0.00 0.00 0.00 0.00 0.45 0.46 0.00 0.19 0.37 0.00 0.00 0.25 0.00 0.00 0.00 K alternative_first_exon bowl chr2L + chr2L_3771755_3772460;chr2L_3771785_3772460,chr2L_3771874_3772460 chr2L_3772317_3772460 chr2L_3771707_3771784 chr2L_3772026_3772316 chr2L_3772461_3772694 16.67 NA NA 25.00 NA NA 15.38 16.67 15.79 NA NA NA NA NA NA 11.11 NA NA 33.33 20.00 NA 22.22 11.11 NA NA NA NA NA NA NA NA NA NA 12.50 NA NA NA NA NA 10.00 NA 20.00 NA NA NA NA NA NA 30.00 NA NA NA NA NA 9.09 NA NA 22.22 K alternative_first_exon slif chr3L + chr3L_22884382_22884464;chr3L_22874499_22884464 chr3L_22882496_22884464 chr3L_22874146_22874498 chr3L_22882363_22882495 chr3L_22884465_22885595 0.00 NA NA 0.00 NA NA NA 20.00 16.67 NA NA 12.50 NA NA NA 0.00 NA NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA NA NA 0.00 NA 20.00 16.67 NA NA NA NA NA 0.00 0.00 16.67 NA NA 0.00 0.00 NA 11.11 0.00 0.00 16.67 NA NA NA NA NA NA 10.00 K alternative_first_exon CG5080 chr2L - chr2L_1162147_1163759 chr2L_1162147_1162999 chr2L_1163760_1163882 chr2L_1163000_1163337 chr2L_1161927_1162146 100.00 97.44 96.55 97.37 97.44 96.77 100.00 97.06 98.46 100.00 96.00 100.00 93.33 96.00 97.14 100.00 96.15 97.14 96.15 98.70 96.43 100.00 100.00 96.77 100.00 94.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.44 100.00 100.00 100.00 100.00 100.00 100.00 100.00 97.87 96.30 100.00 100.00 100.00 100.00 100.00 98.11 100.00 96.55 94.12 100.00 100.00 96.77 100.00 100.00 100.00 K alternative_first_exon Hph chr3R + chr3R_1090138_1092474,chr3R_1092390_1092474;chr3R_1083844_1092474 chr3R_1090925_1092474,chr3R_1091360_1092474 chr3R_1082763_1083843 chr3R_1090666_1090924 chr3R_1092475_1092754 24.24 26.09 36.27 40.50 37.66 41.86 45.90 44.76 39.68 25.00 31.15 36.20 19.61 36.00 39.13 47.66 38.81 37.18 43.16 31.52 33.33 23.48 15.38 16.49 15.87 36.67 16.05 17.74 17.86 19.79 48.84 15.49 20.77 43.14 20.78 20.78 13.76 15.85 14.16 17.27 20.78 32.79 37.18 28.21 17.92 16.81 26.44 15.28 38.41 16.22 22.02 24.24 11.67 17.95 36.19 16.42 15.62 12.87 K alternative_first_exon zip chr2R - chr2R_20898140_20898480,chr2R_20898140_20898992;chr2R_20898140_20898898,chr2R_20898140_20898834;chr2R_20898140_20898622 chr2R_20898140_20899373 chr2R_20898899_20898996;chr2R_20898623_20898731 chr2R_20899374_20899488 chr2R_20897903_20898139 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon Idh chr3L - chr3L_8351006_8353892;chr3L_8351006_8351949,chr3L_8351006_8351655 chr3L_8351006_8351115 chr3L_8353893_8354031;chr3L_8351950_8352117 chr3L_8351116_8351225 chr3L_8349503_8351005 2.27 6.67 0.00 6.06 11.11 0.00 1.79 2.94 2.22 0.00 11.11 3.49 6.90 5.26 2.33 3.39 3.57 0.00 3.33 1.30 0.00 2.78 1.23 1.37 0.00 6.45 2.47 1.61 2.50 2.27 3.12 0.00 3.12 3.12 2.33 2.08 2.50 3.12 0.00 1.23 0.00 1.28 6.25 0.00 2.70 0.00 0.00 0.00 2.74 1.96 2.70 0.00 2.22 4.26 0.00 2.17 2.20 3.70 K alternative_first_exon Pop2 chr3L - chr3L_11992097_11992343;chr3L_11992097_11993849 chr3L_11992097_11993372 chr3L_11993850_11994259 chr3L_11993373_11993790 chr3L_11991498_11992096 98.73 97.08 99.33 98.67 96.64 98.44 98.60 98.50 98.05 99.20 98.26 98.75 98.97 98.20 98.66 98.79 98.98 98.31 99.20 97.91 97.35 98.05 97.51 99.58 96.27 98.74 98.74 98.69 98.38 97.71 98.68 99.37 99.59 97.92 98.56 98.21 99.57 98.85 98.75 98.95 98.74 98.89 99.10 98.17 99.56 98.86 98.11 99.19 98.73 98.90 98.48 99.25 99.33 98.11 98.73 99.01 99.53 98.41 K alternative_first_exon f-cup chr3R - chr3R_9524004_9524064;chr3R_9524004_9524789 chr3R_9524004_9525813 chr3R_9524065_9524581;chr3R_9524790_9525263 chr3R_9525814_9525867 chr3R_9523813_9524003 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon CG14476 chrX - chrX_21474758_21476200 chrX_21474758_21475489 chrX_21476201_21476294 chrX_21475490_21475716 chrX_21474008_21474757 100.00 100.00 100.00 96.94 100.00 100.00 100.00 100.00 99.22 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 K alternative_first_exon CG40191 chr2RHet + chr2RHet_390972_391180;chr2RHet_391004_391180 chr2RHet_391127_391180 chr2RHet_390776_391003 chr2RHet_391006_391126 chr2RHet_391181_391474 99.12 100.00 90.91 100.00 95.65 100.00 98.21 98.11 94.44 NA 100.00 98.25 96.67 96.67 92.59 95.83 100.00 94.12 97.06 97.67 100.00 100.00 91.30 100.00 100.00 93.55 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 94.44 100.00 100.00 100.00 100.00 100.00 96.15 96.55 95.65 100.00 100.00 94.44 100.00 95.24 98.18 94.44 95.00 95.24 100.00 100.00 96.43 95.00 90.91 100.00 K alternative_first_exon twin chr3R - chr3R_20046286_20047530;chr3R_20046286_20047526,chr3R_20046286_20047514 chr3R_20046286_20046836 chr3R_20047527_20047687 chr3R_20046837_20047157 chr3R_20046254_20046285 25.84 NA 36.36 26.67 NA 28.57 28.57 25.00 36.84 NA NA 38.89 28.57 28.57 18.18 17.65 40.00 33.33 20.00 33.33 NA NA 28.57 42.86 NA 30.00 NA NA 11.11 18.18 30.00 14.29 23.08 25.00 NA 25.00 0.00 NA NA 23.53 NA 35.00 33.33 20.00 NA 20.00 NA 23.53 17.65 NA 16.67 NA NA NA 30.00 NA NA 16.67 K alternative_first_exon Myo61F chr3L + chr3L_1324630_1325994;chr3L_1318770_1325994;chr3L_1325261_1325994 chr3L_1321181_1325994 chr3L_1318482_1318769;chr3L_1325124_1325260 chr3L_1321029_1321180 chr3L_1325995_1326139 0.35 0.00 0.00 1.06 0.00 0.68 0.95 0.32 0.54 0.00 0.00 0.32 0.00 0.00 0.59 0.35 0.68 1.46 0.53 0.34 0.78 1.09 0.00 0.00 0.95 0.00 0.00 0.78 0.00 0.88 0.51 0.00 0.69 0.74 0.00 1.61 0.00 0.00 0.73 0.42 0.93 0.30 0.00 0.74 0.00 0.00 0.74 0.00 0.27 0.74 0.42 0.73 0.00 0.00 0.51 0.00 0.56 0.58 K alternative_first_exon mmy chr2L - chr2L_6471715_6473622,chr2L_6471715_6473649;chr2L_6471715_6473630 chr2L_6471715_6471960 chr2L_6473631_6473919 chr2L_6471961_6472070 chr2L_6471328_6471714 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 0.00 0.00 0.00 0.47 1.22 0.00 0.00 1.11 0.00 0.00 0.93 0.00 0.89 K alternative_first_exon dl chr2L - chr2L_17443006_17445248;chr2L_17443006_17448277 chr2L_17443006_17449295 chr2L_17445249_17445567;chr2L_17448278_17448510 chr2L_17449296_17449368 chr2L_17442652_17443005 95.24 98.15 98.15 95.71 97.92 94.12 90.91 96.74 97.01 96.00 97.73 93.15 97.83 95.24 92.86 91.94 97.14 92.86 94.00 97.40 95.12 91.53 95.08 94.23 97.30 93.75 95.45 75.00 92.00 96.61 91.49 96.00 96.15 93.62 94.59 95.45 94.83 97.30 94.59 94.92 96.97 98.11 94.44 91.67 96.15 95.24 88.10 96.15 95.74 93.88 96.88 91.43 94.74 95.24 95.71 97.30 95.00 97.83 K alternative_first_exon Mlf chr2R - chr2R_11826763_11827279;chr2R_11826763_11827414 chr2R_11826763_11826814 chr2R_11827415_11827578 chr2R_11826815_11826917 chr2R_11826542_11826762 0.00 0.00 0.00 0.00 0.00 0.72 0.37 0.35 0.30 0.00 0.00 0.00 0.58 0.00 0.57 0.00 0.00 1.53 0.51 0.61 0.00 0.88 1.06 0.71 0.00 0.00 1.26 0.00 0.00 0.00 1.05 0.00 1.22 0.38 0.94 0.00 0.78 0.90 0.00 0.00 0.00 0.34 0.74 0.88 0.00 0.00 0.00 0.00 0.61 1.30 0.00 0.00 0.00 0.00 0.49 0.80 0.68 0.00 K alternative_first_exon CG32016 chr4 - chr4_975677_977622;chr4_975677_978939,chr4_975677_978914,chr4_975677_978797,chr4_975677_978631 chr4_975677_977170 chr4_978940_978983 chr4_977171_978515 chr4_975547_975676 97.67 96.67 97.37 93.85 93.75 96.67 96.92 96.13 98.25 100.00 100.00 96.27 89.87 97.33 98.78 98.53 98.65 96.67 95.96 97.76 95.92 93.62 96.59 96.97 97.92 97.10 98.77 95.24 97.96 98.15 96.08 96.88 96.23 97.40 98.04 98.28 98.11 95.83 98.04 97.96 97.14 97.92 95.89 97.14 100.00 98.11 100.00 97.67 96.20 97.92 98.65 98.25 100.00 95.45 98.98 100.00 100.00 98.31 K alternative_first_exon CG7816 chr3R - chr3R_25691122_25692883;chr3R_25691122_25693465;chr3R_25691122_25694365,chr3R_25691122_25694254;chr3R_25691122_25691822;chr3R_25691122_25693711 chr3R_25691122_25692901 chr3R_25693466_25693539;chr3R_25694366_25694618;chr3R_25691823_25691898;chr3R_25693712_25693793 chr3R_25692902_25692936 chr3R_25690779_25691121 3.87 4.06 6.19 4.35 7.26 3.87 3.56 5.92 5.52 3.60 7.60 5.77 5.26 4.95 2.87 3.53 6.88 6.11 4.93 3.94 6.59 0.69 2.40 4.23 2.68 3.47 2.44 1.87 2.08 1.87 6.15 5.79 3.09 5.33 4.49 2.27 3.08 3.15 2.96 2.08 3.26 6.46 2.16 3.36 5.61 4.09 3.18 5.97 4.44 3.49 3.53 3.40 3.85 2.29 5.98 2.48 5.02 4.00 K alternative_first_exon Hrb27C chr2L + chr2L_6922369_6922730,chr2L_6921074_6922730,chr2L_6921492_6922730,chr2L_6922095_6922730;chr2L_6921441_6922730;chr2L_6920862_6922730 chr2L_6921674_6922730,chr2L_6921799_6922730 chr2L_6921286_6921440;chr2L_6920693_6920861 chr2L_6921666_6921673 chr2L_6922731_6922826 0.66 1.32 1.09 2.58 1.59 0.00 0.71 0.46 0.61 NA 1.72 1.71 2.08 0.00 1.25 0.37 0.89 1.52 2.05 3.41 1.82 0.00 2.90 0.00 2.22 1.25 0.00 0.00 0.00 2.63 0.91 0.00 0.00 0.46 1.61 0.00 3.03 0.00 3.70 0.00 0.00 0.60 0.81 0.00 0.00 0.00 0.00 1.89 0.42 3.12 0.00 1.59 0.00 0.00 0.85 0.00 0.00 2.13 K alternative_first_exon psq chr2R + chr2R_6493563_6498054,chr2R_6493640_6498054;chr2R_6457648_6498054;chr2R_6471629_6498054 chr2R_6449696_6498054 chr2R_6457312_6457647;chr2R_6471199_6471628 chr2R_6449531_6449695 chr2R_6498055_6499020 54.05 46.88 64.71 58.49 50.00 54.55 41.46 41.27 40.66 68.75 57.14 51.61 55.26 44.74 53.12 40.38 44.83 60.71 48.48 52.54 65.52 55.17 54.05 61.11 62.50 61.54 60.00 50.00 46.67 63.64 52.63 55.56 56.00 42.03 45.83 62.50 58.33 59.26 62.96 60.47 66.67 45.95 51.72 52.38 70.00 57.14 53.85 52.38 43.24 50.00 56.76 44.44 55.56 63.64 50.00 66.67 50.00 41.18 K alternative_first_exon CG1943 chr3R + chr3R_2900855_2902611,chr3R_2901210_2902611,chr3R_2902064_2902611,chr3R_2901072_2902611;chr3R_2900696_2902611 chr3R_2902559_2902611 chr3R_2900559_2900695 chr3R_2902470_2902558 chr3R_2902612_2903509 0.94 0.00 1.06 0.00 0.48 0.54 1.29 0.38 0.94 1.29 0.00 0.82 0.00 1.14 1.15 0.38 0.00 0.50 0.90 1.10 1.64 3.02 0.74 0.21 1.87 0.00 0.31 1.22 1.34 2.21 1.75 2.21 2.05 0.34 0.48 0.00 0.74 0.93 1.60 1.12 1.89 0.95 0.53 0.91 1.20 1.22 0.70 2.44 1.00 0.27 0.56 1.15 0.85 0.78 1.11 1.20 1.40 1.34 K alternative_first_exon His3.3B chrX - chrX_9048719_9050156;chrX_9048719_9049436;chrX_9048719_9050612 chrX_9048719_9048817 chrX_9049437_9049646;chrX_9050613_9050721 chrX_9048818_9049038 chrX_9048413_9048718 1.38 1.08 1.26 0.85 0.79 0.77 0.77 0.63 0.37 0.89 0.27 1.38 0.58 1.53 0.80 1.23 0.79 1.25 1.09 1.62 1.04 2.15 1.53 2.73 1.83 1.44 3.33 3.49 3.95 1.31 1.12 1.96 1.60 0.98 1.51 3.80 1.82 1.86 1.43 3.31 1.54 1.09 0.90 2.97 4.07 2.37 2.40 4.92 1.29 4.44 1.03 1.08 0.60 0.66 1.28 1.57 1.41 3.26 K alternative_first_exon Tret1-1 chr2R + chr2R_7558686_7560221 chr2R_7559804_7560221 chr2R_7558535_7558685 chr2R_7559466_7559803 chr2R_7560222_7560347 0.00 0.00 1.82 2.47 0.00 2.13 1.06 1.54 2.11 0.00 0.00 1.02 0.00 0.00 0.00 2.13 0.00 0.00 0.00 1.55 2.00 0.00 0.00 1.69 0.00 1.89 1.41 24.65 0.00 0.00 0.00 0.00 0.00 2.82 1.79 1.85 1.20 0.00 0.00 1.06 0.00 0.98 0.00 0.00 0.00 1.54 0.00 0.00 2.53 1.82 0.92 2.56 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon CtBP chr3R + chr3R_8837742_8845063,chr3R_8837881_8845063,chr3R_8844861_8845063,chr3R_8840915_8845063,chr3R_8837575_8845063,chr3R_8837419_8845063,chr3R_8843123_8845063,chr3R_8838056_8845063,chr3R_8842516_8845063,chr3R_8837594_8845063,chr3R_8837895_8845063,chr3R_8842742_8845063;chr3R_8837471_8845063 chr3R_8844599_8845063 chr3R_8837388_8837470 chr3R_8844512_8844598 chr3R_8845064_8845536 25.00 24.00 13.79 16.33 27.78 19.23 28.00 13.73 26.42 50.00 17.86 21.05 21.88 20.00 24.44 21.05 18.18 27.27 23.53 25.58 23.08 38.46 36.36 20.00 37.50 29.17 18.18 52.38 40.00 32.14 16.67 19.05 12.90 27.78 31.25 33.33 60.00 28.57 43.75 17.24 26.09 20.90 20.83 33.33 31.58 13.79 14.81 12.00 22.39 36.36 43.75 25.00 41.67 41.67 15.38 27.78 27.27 19.51 K alternative_first_exon CG3625 chr2L - chr2L_284969_290812;chr2L_284969_286306 chr2L_284969_285432 chr2L_286307_286527 chr2L_285433_285776 chr2L_284748_284968 64.71 55.56 62.50 70.97 42.86 53.33 52.94 43.48 47.37 62.50 57.14 50.00 44.44 50.00 43.48 42.86 45.45 42.86 53.85 55.26 75.00 96.77 75.00 73.08 80.00 52.94 81.82 85.71 89.47 87.50 64.71 68.42 88.00 52.00 61.11 78.95 85.71 72.00 81.82 76.32 76.47 56.25 30.77 84.85 80.77 84.00 92.00 58.33 42.86 64.71 72.00 58.82 83.33 76.47 45.83 66.67 80.65 85.71 K alternative_first_exon Bsg chr2L + chr2L_8088371_8089393,chr2L_8088517_8089393,chr2L_8083458_8089393,chr2L_8088716_8089393,chr2L_8083588_8089393,chr2L_8083687_8089393,chr2L_8084391_8089393;chr2L_8083522_8089393,chr2L_8083637_8089393 chr2L_8088454_8089393 chr2L_8083422_8083521 chr2L_8088306_8088453 chr2L_8089394_8089736 25.00 33.33 25.00 19.15 18.18 29.41 16.67 22.86 18.97 NA 28.57 23.91 25.00 22.22 11.11 26.00 28.57 36.36 20.83 23.81 20.00 NA 59.09 38.46 55.56 NA 30.77 NA 15.38 11.76 19.05 8.33 15.79 17.65 61.54 58.33 33.33 NA NA 40.74 7.14 18.52 19.05 46.15 25.00 22.22 50.00 15.79 31.43 30.77 37.50 45.45 61.54 NA 11.11 54.55 33.33 10.00 K alternative_first_exon CG3632 chrX + chrX_16190941_16191693,chrX_16191113_16191693;chrX_16190824_16191693,chrX_16190917_16191693 chrX_16191273_16191693 chrX_16190746_16190823 chrX_16191116_16191272 chrX_16191694_16191817 40.54 46.15 43.75 39.29 27.27 14.29 42.31 41.67 40.54 NA 46.15 41.03 30.77 38.46 25.00 42.86 31.25 33.33 30.00 52.27 25.00 60.00 40.74 42.86 43.75 13.33 50.00 53.33 25.00 50.00 25.00 NA 60.00 36.11 40.00 50.00 43.48 42.86 33.33 38.89 NA 25.64 27.78 55.00 50.00 50.00 50.00 33.33 33.33 60.00 36.36 31.25 60.00 NA 36.36 40.00 58.33 33.33 K alternative_first_exon arm chrX - chrX_1793073_1793389,chrX_1793073_1793734,chrX_1793073_1793794,chrX_1793073_1794406;chrX_1793073_1794076;chrX_1793073_1793431,chrX_1793073_1793413 chrX_1793073_1794542 chrX_1794077_1794222;chrX_1793432_1793643 chrX_1794543_1794673 chrX_1793013_1793072 30.18 29.59 28.78 27.57 37.50 29.03 28.98 27.89 30.30 35.29 29.89 34.41 30.25 23.81 31.87 30.79 28.89 31.31 30.18 34.59 33.33 23.53 26.83 31.31 25.00 29.08 30.67 18.31 33.66 30.59 32.43 42.11 32.35 27.16 22.58 28.05 29.09 28.79 32.18 21.49 40.91 30.24 26.40 18.62 39.47 32.54 29.55 42.18 32.04 29.11 27.84 29.82 22.81 36.54 31.03 28.42 33.33 39.06 K alternative_first_exon Arf79F chr3L - chr3L_22863166_22863946;chr3L_22863166_22864559 chr3L_22863166_22865156,chr3L_22863166_22865023 chr3L_22863947_22864153;chr3L_22864560_22864855 chr3L_22865157_22865157 chr3L_22862942_22863165 60.00 NA NA 66.67 NA NA NA 69.23 60.00 NA NA NA NA NA 50.00 61.54 NA NA NA 78.57 NA NA 45.45 77.78 NA NA 60.00 NA NA 50.00 57.14 NA NA 60.00 NA NA NA NA NA 66.67 NA 83.33 NA NA NA 72.73 NA NA 50.00 NA NA 50.00 NA NA 44.44 NA 55.56 33.33 K alternative_first_exon Hsc70-3 chrX - chrX_11699076_11699138,chrX_11699076_11699335,chrX_11699076_11699923,chrX_11699076_11700062;chrX_11699076_11699321;chrX_11699076_11700276,chrX_11699076_11700110 chrX_11699076_11700901 chrX_11699322_11699393;chrX_11700277_11700394 chrX_11700902_11701212 chrX_11698930_11699075 31.29 31.29 29.17 32.00 16.13 34.35 40.32 35.29 29.92 47.69 23.75 28.49 25.15 36.07 22.51 41.82 29.90 18.79 31.23 31.00 24.32 28.06 30.00 25.53 26.47 14.01 18.36 36.23 35.39 40.44 36.91 55.19 37.29 37.53 46.67 43.45 14.37 18.95 12.67 59.93 45.51 26.03 27.22 61.69 36.94 57.25 34.74 48.64 32.48 29.95 35.85 30.71 33.59 43.06 23.50 30.16 19.37 43.91 K alternative_first_exon Fim chrX - chrX_17183071_17195392;chrX_17183071_17185283 chrX_17183071_17189085 chrX_17195393_17196011;chrX_17185284_17185701 chrX_17189086_17189491 chrX_17181960_17183070 2.48 0.99 1.43 1.61 2.20 1.85 3.90 2.38 3.00 1.06 5.75 1.88 1.94 3.03 2.16 1.48 2.59 6.42 2.29 2.16 6.54 7.79 1.85 2.86 1.45 2.70 2.91 3.41 2.27 2.90 1.78 1.64 2.37 2.25 6.02 2.50 2.97 2.63 1.39 2.61 3.49 2.05 2.48 2.92 4.84 3.45 4.84 2.38 1.90 4.60 2.99 3.09 2.13 2.04 1.99 3.08 2.86 1.79 K alternative_first_exon CG42245,MEP-1 chr3L + chr3L_2636996_2637067;chr3L_2636968_2637067;chr3L_2636002_2637067 chr3L_2633810_2637067 chr3L_2636905_2636967;chr3L_2635762_2636001 chr3L_2633538_2633809 chr3L_2637068_2639553 74.51 74.77 75.73 70.70 71.43 75.56 72.41 73.58 71.12 82.61 74.07 70.65 68.22 67.23 76.70 68.86 72.34 74.04 68.99 73.06 72.62 80.29 73.49 73.85 70.83 74.51 81.03 70.19 86.09 84.55 76.23 81.36 84.67 67.71 71.82 70.27 80.00 78.16 79.35 78.44 87.21 72.48 63.83 73.08 77.61 82.41 77.78 82.51 68.29 78.49 74.70 71.43 83.64 80.36 71.43 77.27 75.00 80.36 K alternative_first_exon ps chr3R + chr3R_5243723_5257753;chr3R_5254375_5257753 chr3R_5245770_5257753 chr3R_5243664_5243722;chr3R_5254284_5254374 chr3R_5245317_5245769 chr3R_5257754_5258561 57.14 69.23 44.44 68.75 57.14 72.73 57.58 45.24 63.89 NA 46.67 59.26 50.00 55.00 52.94 59.52 46.67 62.50 55.00 53.19 50.00 60.00 69.57 60.00 63.64 47.06 62.50 42.86 58.33 53.33 57.14 NA 53.85 59.26 75.00 47.06 40.91 55.56 50.00 52.00 NA 42.42 66.67 57.14 NA 100.00 44.44 40.00 61.54 NA 63.16 72.73 57.14 NA 52.94 42.86 71.43 66.67 K alternative_first_exon rdx chr3R - chr3R_9796825_9796989;chr3R_9796825_9849367;chr3R_9796825_9852599 chr3R_9796825_9807355 chr3R_9796990_9797520;chr3R_9849368_9849616;chr3R_9852600_9852666 chr3R_9807356_9809083 chr3R_9796674_9796824 42.86 42.50 36.36 54.29 40.74 46.43 42.00 35.19 44.87 53.57 34.48 50.72 37.04 27.27 30.77 27.12 44.00 33.33 36.36 44.16 40.00 78.08 42.86 39.66 44.44 39.29 40.82 66.67 59.32 42.50 39.39 50.00 64.00 37.50 52.78 50.00 60.00 44.44 51.79 41.56 44.00 45.00 34.48 44.44 65.62 46.88 46.67 49.02 36.99 38.24 41.67 40.00 50.00 40.00 36.84 37.84 53.57 50.00 N alternative_first_exon bs chr2R + chr2R_20232198_20262937 chr2R_20235984_20262937 chr2R_20231236_20232197 chr2R_20235735_20235983 chr2R_20262938_20263289 97.37 97.44 96.15 74.36 96.30 96.30 95.65 96.15 98.25 96.15 95.24 98.11 92.86 94.44 96.00 100.00 95.65 94.74 95.24 98.48 95.00 97.62 98.59 98.33 97.44 95.83 97.14 96.77 97.62 95.83 94.44 96.00 97.56 97.37 96.55 97.14 98.68 98.15 98.75 97.73 92.00 98.39 95.83 97.37 98.11 97.50 98.00 95.24 97.96 97.78 97.78 96.55 97.96 97.73 96.67 97.56 98.08 97.87 N alternative_first_exon C3G chrX - chrX_6683085_6685800;chrX_6683085_6689481;chrX_6683085_6694082;chrX_6683085_6683744 chrX_6683085_6697139 chrX_6685801_6685924;chrX_6689482_6689611;chrX_6694083_6694724;chrX_6683745_6685194 chrX_6697140_6697579 chrX_6682494_6683084 53.85 52.63 40.00 51.61 66.67 60.00 48.48 59.26 49.02 66.67 53.85 42.86 55.56 57.14 63.16 53.12 45.00 40.91 50.00 54.84 61.54 34.04 46.15 60.00 37.50 46.67 66.67 53.85 53.85 65.00 50.00 71.43 70.83 61.76 50.00 47.06 50.00 61.54 50.00 52.00 70.00 51.35 50.00 52.63 60.00 60.00 62.50 72.00 48.48 75.00 42.86 68.75 60.00 80.00 53.85 55.56 66.67 75.00 K alternative_first_exon fbl chr3L + chr3L_20381467_20381768,chr3L_20381664_20381768,chr3L_20381129_20381768;chr3L_20379955_20381768;chr3L_20381668_20381768;chr3L_20377959_20381768 chr3L_20381102_20381768 chr3L_20379392_20379954;chr3L_20381514_20381667;chr3L_20377531_20377958 chr3L_20380716_20381101 chr3L_20381769_20381947 1.85 2.53 1.33 6.58 1.75 3.51 2.38 2.80 2.50 0.00 2.00 1.55 1.75 1.64 2.41 2.35 1.75 2.90 1.69 1.38 1.49 5.81 2.31 1.79 2.94 1.56 1.94 4.62 2.30 2.38 1.90 1.89 1.77 1.85 1.45 2.44 1.45 2.30 1.54 1.24 1.61 1.42 1.82 2.00 0.00 1.12 1.06 1.35 1.53 1.16 1.87 1.69 2.56 1.85 2.44 3.03 2.25 0.00 K alternative_first_exon His3.3B chrX - chrX_9048719_9050156;chrX_9048719_9050612;chrX_9048719_9048817 chrX_9048719_9049436 chrX_9050613_9050721;chrX_9048818_9049038 chrX_9049437_9049646 chrX_9048413_9048718 0.31 0.27 0.31 0.17 0.26 0.38 0.15 0.32 0.28 0.00 0.27 0.69 0.19 0.61 0.27 0.41 0.26 0.31 0.27 0.40 0.26 0.72 0.65 0.23 0.37 0.24 0.28 0.58 1.69 0.44 0.37 0.98 1.06 0.49 0.00 0.42 0.20 0.00 0.29 0.74 1.54 0.14 0.30 0.66 0.00 1.78 0.80 3.28 0.57 0.63 0.26 0.27 0.00 0.00 0.26 0.39 0.00 1.09 K alternative_first_exon CG17838 chr3R + chr3R_16609303_16617466;chr3R_16598605_16617466;chr3R_16606550_16617466 chr3R_16616055_16617466 chr3R_16608705_16609302;chr3R_16598518_16598604;chr3R_16605654_16606549 chr3R_16615708_16616054 chr3R_16617467_16617585 0.00 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.00 0.00 2.70 0.00 0.00 0.00 0.00 1.16 0.00 0.00 2.13 0.00 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 1.00 0.00 0.00 0.00 0.00 0.00 1.92 0.00 0.00 0.00 N alternative_first_exon C3G chrX - chrX_6683085_6689481;chrX_6683085_6694082;chrX_6683085_6697139;chrX_6683085_6683744 chrX_6683085_6685800 chrX_6689482_6689611;chrX_6694083_6694724;chrX_6697140_6697579;chrX_6683745_6685194 chrX_6685801_6685924 chrX_6682494_6683084 5.26 5.26 10.00 3.23 6.67 0.00 0.00 0.00 5.88 11.11 0.00 20.41 5.56 4.76 0.00 6.25 5.00 18.18 0.00 6.45 15.38 14.89 11.54 5.00 12.50 6.67 0.00 0.00 15.38 5.00 5.00 14.29 8.33 2.94 7.14 11.76 9.09 7.69 12.50 8.00 0.00 2.70 5.00 10.53 20.00 6.67 0.00 8.00 6.06 0.00 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon Spn4 chr2R - chr2R_2765864_2766349 chr2R_2765864_2765943 chr2R_2766350_2766428 chr2R_2765944_2766146 chr2R_2764932_2765863 77.78 85.71 NA 75.00 NA NA NA NA NA NA NA 87.50 NA NA NA NA NA NA NA 72.73 NA NA NA NA NA NA NA NA NA NA NA NA NA 57.14 NA NA NA NA 71.43 88.89 NA 77.78 NA NA NA NA NA NA NA NA NA NA NA NA 66.67 NA 100.00 87.50 K alternative_first_exon ps chr3R + chr3R_5245770_5257753;chr3R_5254375_5257753 chr3R_5243723_5257753 chr3R_5245317_5245769;chr3R_5254284_5254374 chr3R_5243664_5243722 chr3R_5257754_5258561 6.06 7.69 11.11 6.25 0.00 9.09 6.06 7.14 5.56 NA 13.33 0.00 4.55 10.00 5.88 7.14 6.67 6.25 15.00 17.02 5.56 13.33 4.35 0.00 0.00 11.76 0.00 14.29 16.67 0.00 0.00 NA 15.38 7.41 0.00 5.88 4.55 11.11 10.00 4.00 NA 9.09 6.67 4.76 NA 0.00 11.11 10.00 7.69 NA 5.26 0.00 0.00 NA 5.88 0.00 0.00 0.00 K alternative_first_exon CG14425,Sxl chrX - chrX_6986204_6992033,chrX_6986204_6991977 chrX_6986204_6991030 chrX_6992034_6992086 chrX_6991031_6991094 chrX_6985707_6986203 0.00 NA NA NA NA NA 0.00 NA 6.67 NA NA 0.00 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 6.67 NA NA 0.00 NA NA NA NA NA NA NA NA NA NA NA NA NA NA 0.00 NA NA NA NA NA NA NA NA NA K alternative_first_exon Jupiter chr3R - chr3R_7430006_7445425 chr3R_7430006_7430307 chr3R_7445426_7445656 chr3R_7430308_7430473 chr3R_7429864_7430005 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA 16.67 NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA K alternative_first_exon CG4857 chrX + chrX_4014172_4014328,chrX_4013839_4014328;chrX_4013922_4014328;chrX_4013051_4014328;chrX_4013803_4014328 chrX_4014134_4014328 chrX_4013902_4013921;chrX_4012389_4013050;chrX_4013724_4013802 chrX_4014114_4014133 chrX_4014329_4014457 0.00 1.16 1.28 0.00 1.67 0.00 1.30 0.00 0.63 1.64 0.00 0.00 1.75 0.00 0.00 0.00 1.85 1.59 0.00 0.00 0.00 0.00 0.76 0.00 0.00 1.69 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.58 0.00 0.00 0.82 0.00 0.69 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 K alternative_first_exon CG4407 chrX - chrX_12797000_12797409;chrX_12797000_12797361 chrX_12797000_12797110 chrX_12797362_12797550 chrX_12797111_12797195 chrX_12796349_12796999 19.18 18.75 24.07 17.46 19.51 18.37 27.16 20.29 19.49 22.22 19.44 23.60 10.34 22.50 21.82 19.18 20.83 22.45 23.44 24.27 13.33 8.70 21.62 22.08 19.67 29.55 11.32 12.00 7.84 16.98 36.21 18.75 7.69 18.42 10.20 8.70 20.78 13.46 9.46 18.52 9.09 22.33 22.50 29.27 17.65 8.75 17.31 15.87 22.09 20.00 18.31 27.45 7.14 17.39 26.56 24.62 6.90 2.86 K alternative_first_exon CG34423,CG9875 chr2R + chr2R_19245870_19246355 chr2R_19246291_19246355 chr2R_19245763_19245869 chr2R_19246241_19246290 chr2R_19246356_19246419 100.00 92.31 100.00 92.86 100.00 NA NA 100.00 100.00 100.00 NA 100.00 NA NA 100.00 NA NA 100.00 NA 86.67 100.00 NA 92.86 92.31 NA NA NA 84.62 NA NA 100.00 NA NA 100.00 NA NA 100.00 NA NA 86.67 NA 95.83 NA NA 94.12 92.31 100.00 NA 100.00 95.00 NA 100.00 100.00 NA 100.00 100.00 91.67 NA K alternative_first_exon Ald chr3R - chr3R_22083764_22086879;chr3R_22083764_22087057;chr3R_22083764_22086875;chr3R_22083764_22085523 chr3R_22083764_22084708 chr3R_22087058_22087313;chr3R_22086876_22087046;chr3R_22085524_22085554 chr3R_22084709_22084996 chr3R_22082947_22083763 5.56 6.19 7.45 4.29 3.83 6.03 9.63 6.87 5.25 2.20 5.45 4.60 4.55 5.41 6.04 7.36 7.14 3.72 5.98 5.50 6.94 3.77 10.57 7.82 13.77 9.96 14.85 8.49 4.86 3.20 6.91 3.26 1.84 6.38 5.45 12.30 6.42 7.62 7.96 2.76 4.13 4.87 5.03 3.66 2.57 3.67 9.38 2.46 4.40 8.40 9.52 8.70 4.23 8.94 5.28 6.86 5.56 1.33 K alternative_first_exon HPS4 chr2R + chr2R_13571234_13574762 chr2R_13574444_13574762 chr2R_13571102_13571233 chr2R_13574253_13574443 chr2R_13574763_13574997 5.26 NA 0.00 7.14 NA 0.00 9.09 5.26 6.25 NA NA 0.00 12.50 0.00 0.00 0.00 0.00 NA 10.00 8.33 NA NA 0.00 0.00 NA 0.00 12.50 NA NA 0.00 10.00 NA NA 5.88 0.00 NA 10.00 NA 0.00 0.00 NA 15.38 12.50 NA NA 12.50 NA NA 5.56 NA 10.00 NA NA NA 0.00 NA NA NA K alternative_first_exon CG2918 chrX - chrX_2168373_2168701,chrX_2168373_2168770,chrX_2168373_2168893;chrX_2168373_2168907 chrX_2168373_2168682 chrX_2168908_2169111 chrX_2168683_2168811 chrX_2168059_2168372 0.00 0.00 0.00 1.18 1.09 1.16 1.34 0.63 0.00 0.00 1.04 0.46 0.00 0.85 0.77 0.63 0.92 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.00 0.83 0.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon Oda chr2R - chr2R_8055709_8058428;chr2R_8055709_8055927 chr2R_8055709_8061595 chr2R_8058429_8058796;chr2R_8055928_8056069 chr2R_8061596_8061767 chr2R_8055499_8055708 98.32 99.00 98.68 98.67 98.63 99.32 99.09 98.99 98.87 97.27 98.90 98.29 98.56 98.70 98.44 99.20 98.85 97.93 98.86 98.43 98.71 94.61 96.94 97.40 96.44 99.19 97.71 92.22 96.60 97.91 99.58 98.72 95.26 98.98 97.13 96.28 97.18 98.32 98.03 97.99 96.10 98.86 99.15 98.45 97.32 98.26 96.69 97.69 98.88 98.32 97.94 97.86 98.15 97.98 98.76 98.18 98.76 99.10 K alternative_first_exon Pdp1 chr3L - chr3L_7813130_7846282;chr3L_7813130_7818683;chr3L_7813130_7823486 chr3L_7813130_7860340 chr3L_7846283_7847289;chr3L_7818684_7820387;chr3L_7823487_7824927 chr3L_7860341_7860472 chr3L_7813088_7813129 0.00 20.00 0.00 0.00 0.00 0.00 25.00 25.00 25.00 0.00 33.33 16.67 100.00 33.33 0.00 0.00 25.00 33.33 33.33 23.53 0.00 0.00 14.29 25.00 0.00 0.00 0.00 0.00 0.00 0.00 20.00 0.00 0.00 0.00 0.00 0.00 25.00 0.00 25.00 0.00 0.00 25.00 0.00 0.00 33.33 0.00 33.33 0.00 25.00 0.00 20.00 25.00 33.33 0.00 0.00 33.33 40.00 0.00 K alternative_first_exon dikar chr3L - chr3L_6735150_6736125 chr3L_6735150_6735741 chr3L_6736126_6736249 chr3L_6735742_6735843 chr3L_6735015_6735149 0.00 NA 5.88 0.00 NA 0.00 0.00 0.00 0.00 NA NA 0.00 0.00 7.69 7.14 0.00 0.00 0.00 0.00 4.55 NA 0.00 0.00 NA NA 0.00 NA NA NA NA 0.00 NA NA 0.00 NA 0.00 0.00 NA NA 0.00 NA 0.00 0.00 NA NA NA NA NA 0.00 NA 11.11 0.00 NA NA 0.00 NA NA NA K alternative_first_exon CG3967 chr3L - chr3L_9412372_9415965;chr3L_9412372_9419322;chr3L_9412372_9412996 chr3L_9412372_9413187 chr3L_9419323_9419777;chr3L_9412997_9413032 chr3L_9413188_9413272 chr3L_9412195_9412371 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon Hsc70-3 chrX - chrX_11699076_11699138,chrX_11699076_11699335,chrX_11699076_11699923,chrX_11699076_11700062;chrX_11699076_11700276,chrX_11699076_11700110;chrX_11699076_11700901 chrX_11699076_11699321 chrX_11700277_11700394;chrX_11700902_11701212 chrX_11699322_11699393 chrX_11698930_11699075 16.89 11.66 14.88 16.00 17.42 12.98 13.71 14.08 16.42 22.31 16.88 15.89 12.57 13.52 14.66 12.32 18.14 14.77 14.87 13.50 16.89 19.39 21.05 26.06 16.91 15.46 18.36 9.66 27.57 19.85 15.02 14.94 25.42 12.85 16.30 11.31 23.12 26.32 22.67 9.41 17.42 19.85 16.11 15.42 27.03 22.90 16.84 28.40 16.99 20.28 16.98 22.14 18.75 13.89 17.05 17.46 18.47 24.04 K alternative_first_exon Akap200 chr2L + chr2L_8426446_8426873;chr2L_8415887_8426873 chr2L_8420065_8426873 chr2L_8415690_8415886 chr2L_8419874_8420064 chr2L_8426874_8427093 61.96 62.75 60.33 67.18 59.59 63.97 70.35 67.95 64.12 60.23 51.30 62.40 62.53 67.43 61.73 63.90 67.82 54.70 67.16 49.40 54.29 61.96 68.45 67.42 69.47 61.42 64.03 70.82 57.56 67.38 60.61 46.58 51.99 64.15 69.40 58.13 48.27 57.80 53.87 59.23 50.91 62.70 67.01 68.06 56.66 54.98 57.01 55.47 62.88 63.35 63.27 63.61 56.37 55.00 63.09 53.72 57.34 50.68 K alternative_first_exon CG11652 chr3L - chr3L_11688679_11689514,chr3L_11688679_11689728;chr3L_11688679_11689974 chr3L_11688679_11689450 chr3L_11689975_11690086 chr3L_11689451_11689543 chr3L_11687910_11688678 18.90 20.69 21.43 36.36 19.35 14.81 32.69 28.57 25.68 16.67 19.05 21.62 20.00 12.90 16.22 25.76 18.52 25.00 15.38 17.91 15.00 15.62 21.05 26.09 20.00 14.29 19.05 0.00 18.75 9.09 24.00 13.64 5.26 24.07 14.29 25.00 16.67 27.27 17.24 14.71 8.33 21.21 25.00 18.18 0.00 15.38 21.43 11.54 21.05 16.67 25.00 19.35 NA 20.00 16.22 22.73 8.33 0.00 K alternative_first_exon CG42353,CG42354 chrX - chrX_15989724_15991045 chrX_15989724_15990559 chrX_15991046_15991605 chrX_15990560_15990699 chrX_15989491_15989723 69.23 73.08 72.73 72.09 72.73 70.37 70.45 78.57 76.92 53.57 77.78 78.72 73.68 82.14 71.79 84.21 75.00 79.31 79.31 73.47 80.77 50.00 55.56 63.64 58.62 75.86 64.86 45.45 41.94 56.00 78.38 60.00 37.50 69.23 54.84 57.58 56.52 60.00 63.16 63.41 53.85 78.85 77.27 68.29 53.33 76.00 61.54 40.74 79.63 46.15 66.67 73.33 66.67 68.75 82.76 68.18 75.00 50.00 K alternative_first_exon Cct1 chr3L + chr3L_1550352_1550713,chr3L_1546677_1550713,chr3L_1548401_1550713,chr3L_1547412_1550713;chr3L_1547590_1550713;chr3L_1549911_1550713 chr3L_1546307_1550713 chr3L_1547334_1547589;chr3L_1549880_1549910 chr3L_1546081_1546306 chr3L_1550714_1551288 85.12 80.92 83.16 86.06 83.69 81.18 92.86 87.99 86.67 74.39 88.82 82.87 80.00 86.05 85.86 90.17 85.07 78.86 82.04 83.19 87.22 81.92 82.13 79.61 85.12 87.43 83.94 84.78 86.09 84.24 85.32 85.22 85.12 88.00 88.15 88.81 74.21 77.85 74.19 81.06 87.93 83.52 87.41 87.33 70.89 84.04 85.50 86.71 86.38 83.48 82.45 72.12 85.15 85.83 85.64 81.60 86.55 89.39 K alternative_first_exon Fim chrX - chrX_17183071_17185283;chrX_17183071_17189085 chrX_17183071_17195392 chrX_17185284_17185701;chrX_17189086_17189491 chrX_17195393_17196011 chrX_17181960_17183070 68.44 67.33 67.14 65.06 68.13 64.81 76.10 68.65 70.27 56.38 64.37 74.65 81.55 71.21 70.50 66.05 72.41 59.63 70.29 73.16 56.07 68.83 64.81 66.67 72.46 72.97 70.87 59.09 78.41 63.04 68.05 67.21 72.19 70.04 58.65 81.25 62.38 64.47 69.44 69.28 67.44 68.85 71.07 52.55 62.90 66.38 72.58 72.62 68.44 62.07 68.66 58.76 72.34 65.31 66.23 61.54 75.71 76.79 K alternative_first_exon apt chr2R + chr2R_19484322_19484414,chr2R_19453742_19484414;chr2R_19468992_19484414;chr2R_19471499_19484414;chr2R_19455916_19484414 chr2R_19452574_19484414 chr2R_19468615_19468991;chr2R_19471332_19471498;chr2R_19455581_19455915 chr2R_19452420_19452573 chr2R_19484415_19484520 2.56 0.00 2.56 1.85 0.00 3.12 0.00 1.25 2.02 7.14 0.00 2.60 7.69 2.00 1.96 1.23 0.00 3.33 1.64 1.41 0.00 0.00 2.70 3.70 0.00 2.38 3.03 7.14 5.00 3.70 2.38 0.00 2.94 1.19 0.00 4.76 4.35 0.00 0.00 5.13 5.56 1.39 0.00 3.45 0.00 4.17 5.56 6.12 2.17 4.17 6.98 3.85 9.09 8.33 3.51 0.00 4.35 5.88 K alternative_first_exon Lmpt chr3L + chr3L_16890729_16905228 chr3L_16904692_16905228 chr3L_16890484_16890728 chr3L_16904367_16904691 chr3L_16905229_16905429 0.00 0.00 0.00 0.00 3.12 0.00 0.00 0.00 1.08 0.00 0.00 1.89 0.00 0.00 0.00 0.00 0.00 0.00 3.33 1.64 0.00 1.11 0.00 0.00 0.00 0.00 0.00 2.33 0.00 2.04 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 K alternative_first_exon mrj chr2R - chr2R_12093585_12108627;chr2R_12093585_12097072;chr2R_12093585_12093676;chr2R_12093585_12097694 chr2R_12093585_12109174 chr2R_12097073_12097348;chr2R_12093677_12093767;chr2R_12097695_12097904 chr2R_12109175_12109301 chr2R_12093406_12093584 3.85 5.26 2.70 2.41 5.71 4.17 2.22 2.73 4.81 0.00 2.70 2.25 0.00 3.45 1.64 3.26 3.28 4.65 1.37 2.08 4.65 0.00 5.56 2.04 8.57 2.17 6.12 4.76 5.00 3.57 2.90 7.69 5.88 3.16 2.56 0.00 9.38 5.56 12.50 1.79 7.41 5.13 2.08 2.17 5.56 9.52 2.22 11.11 5.56 8.82 4.00 8.82 5.56 3.85 5.71 3.03 2.78 20.00 K alternative_first_exon Mnt chrX + chrX_3583579_3586985;chrX_3577483_3586985;chrX_3583516_3586985 chrX_3582529_3586985 chrX_3577386_3577482;chrX_3583398_3583515 chrX_3582270_3582528 chrX_3586986_3587965 63.64 NA 66.67 63.64 NA NA 60.00 66.67 60.00 NA NA 40.00 54.55 60.00 NA 68.42 62.50 NA 66.67 64.29 66.67 NA NA NA NA NA NA NA NA NA 70.00 NA NA 62.50 66.67 NA NA NA NA 54.55 NA 45.45 83.33 NA NA NA NA 63.64 68.75 NA NA NA NA NA NA NA NA NA K alternative_first_exon CG7029 chr3R + chr3R_18611128_18612727;chr3R_18592449_18612727 chr3R_18611146_18612727 chr3R_18592333_18592448 chr3R_18610206_18611145 chr3R_18612728_18614239 6.25 6.67 6.06 6.82 4.17 4.35 6.15 1.35 5.33 6.25 4.17 3.57 4.55 3.12 3.57 4.41 2.78 4.17 2.27 4.76 4.35 25.00 13.33 8.33 12.50 6.67 13.16 29.63 10.00 6.25 4.65 7.14 8.11 2.78 14.81 17.50 23.33 13.64 17.86 7.69 4.76 4.62 3.57 6.67 8.33 3.85 13.33 3.64 4.69 9.52 6.82 6.45 6.67 20.00 4.76 8.33 10.00 2.78 N alternative_first_exon C3G chrX - chrX_6683085_6685800;chrX_6683085_6694082;chrX_6683085_6697139;chrX_6683085_6683744 chrX_6683085_6689481 chrX_6685801_6685924;chrX_6694083_6694724;chrX_6697140_6697579;chrX_6683745_6685194 chrX_6689482_6689611 chrX_6682494_6683084 20.00 26.32 25.00 35.48 13.33 10.00 33.33 29.63 25.49 11.11 23.08 24.49 22.22 23.81 15.79 25.00 35.00 27.27 34.62 19.35 7.69 21.28 19.23 20.00 25.00 20.00 11.11 7.69 7.69 10.00 25.00 0.00 4.17 20.59 21.43 11.76 13.64 7.69 6.25 16.00 0.00 24.32 25.00 5.26 10.00 20.00 12.50 4.00 30.30 12.50 39.29 18.75 20.00 0.00 26.92 22.22 16.67 0.00